BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE
[Candidatus Liberibacter asiaticus str. psy62]
         (440 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040486|gb|ACT57282.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 440

 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/440 (100%), Positives = 440/440 (100%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI
Sbjct: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN
Sbjct: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE
Sbjct: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA
Sbjct: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD
Sbjct: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS
Sbjct: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
           ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT
Sbjct: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           GCVDVEQLLDIIFSKFCIGK
Sbjct: 421 GCVDVEQLLDIIFSKFCIGK 440


>gi|315122032|ref|YP_004062521.1| tRNA modification GTPase TrmE [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495434|gb|ADR52033.1| tRNA modification GTPase TrmE [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 440

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/440 (84%), Positives = 403/440 (91%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN+EK+TIFA+S+G LPSAIS+IRLSG SCFQVCEFICKKK P PR ASLR+F+G DGRI
Sbjct: 1   MNYEKKTIFALSSGILPSAISVIRLSGSSCFQVCEFICKKKNPLPRVASLRFFYGFDGRI 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LDKGLLI+FPSP+SFTGED AEFHVHGGI+VV+GILEELAKMPNLR ANPGEFSRRAFEN
Sbjct: 61  LDKGLLILFPSPKSFTGEDCAEFHVHGGISVVDGILEELAKMPNLRRANPGEFSRRAFEN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDLLEAESLADLISSETEMQRRLSMEGMSG+LS+LY  WI+KLT++RSFIEADLDFS+
Sbjct: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGKLSNLYNGWINKLTYVRSFIEADLDFSD 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EEDVQ FSSKE+ NDIL LK++ISSHISQGKLGEIIRNGYKIVILG+SNAGKSSL NALA
Sbjct: 181 EEDVQKFSSKEIWNDILLLKDEISSHISQGKLGEIIRNGYKIVILGNSNAGKSSLLNALA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K+DVAIVTD+PGTTRDV+TIDLDL GYLVKISDTAGIRET+ IVEKEGIKR F EVENAD
Sbjct: 241 KRDVAIVTDVPGTTRDVITIDLDLGGYLVKISDTAGIRETNSIVEKEGIKRAFREVENAD 300

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           LILLL+EI+SK EI FPKNI FIFIGTKSDLY    +EYDHLISS TGEGLEELINKIK+
Sbjct: 301 LILLLEEISSKTEILFPKNIAFIFIGTKSDLYDNSFKEYDHLISSVTGEGLEELINKIKN 360

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
           I+SNKFK     IPSHKRHL HLSQ V+YLE AS  EKDCGLDIIAENLRLAS+SLG+IT
Sbjct: 361 IISNKFKTNSMFIPSHKRHLDHLSQAVKYLEDASSGEKDCGLDIIAENLRLASISLGRIT 420

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G VDVEQLLDIIFSKFCIGK
Sbjct: 421 GNVDVEQLLDIIFSKFCIGK 440


>gi|222087929|ref|YP_002546467.1| tRNA modification GTPase TrmE [Agrobacterium radiobacter K84]
 gi|221725377|gb|ACM28533.1| tRNA modification GTPase TrmE [Agrobacterium radiobacter K84]
          Length = 444

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/441 (50%), Positives = 302/441 (68%), Gaps = 3/441 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TIFA+S+GALP+ ++++R+SGP        +     P PR+A+L+     +G  
Sbjct: 6   MNAIGDTIFALSSGALPAGVAVVRISGPKALAAVAAL-AGTLPKPRQAALKTIRTRNGLT 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GL++VFP+P SFTGED AE  VHGG AVV  +L+EL+     RLA  GEFSRRA EN
Sbjct: 65  IDQGLVLVFPAPASFTGEDCAEIQVHGGKAVVAALLDELSNFVGCRLAEHGEFSRRALEN 124

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL+E E LADLI++ETEMQRRL++E  +G LS LY  W D+LT  R+ IEA+LDF++
Sbjct: 125 GKMDLVEVEGLADLIAAETEMQRRLAVEHAAGGLSKLYEGWADRLTRARALIEAELDFAD 184

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+DV    S  V +D+  L+ ++S+H++    GEI+R+G K+VI G  NAGKSSL NALA
Sbjct: 185 EDDVPGSVSDMVWDDMAKLRAELSAHLAGAGFGEIVRDGLKVVIAGAPNAGKSSLMNALA 244

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIVTDI GTTRDVL +DL++EGY V++ DTAG+RET++++E+EGIKR       AD
Sbjct: 245 RREVAIVTDIAGTTRDVLHVDLNIEGYAVRLYDTAGLRETEEVIEREGIKRALRTAAEAD 304

Query: 301 LILLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
           +IL L EI +  +I FP     +F +GTK+D++      YD  ISS TG GL EL   + 
Sbjct: 305 VILSLAEIGTGAQIDFPGFGGRVFRVGTKADIHPADETGYDLCISSSTGAGLAELHQLLV 364

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
             L  +   L  ++PS  RH   L++++  L  A ++    GLDI AE LR A  SLG+I
Sbjct: 365 EDLQERTASLSLALPSRLRHRTLLAESLEALTQA-VSATSVGLDIRAEYLRQAGHSLGRI 423

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG VDVE LLD+IFS+FCIGK
Sbjct: 424 TGRVDVEDLLDVIFSEFCIGK 444


>gi|227823856|ref|YP_002827829.1| tRNA modification GTPase TrmE [Sinorhizobium fredii NGR234]
 gi|227342858|gb|ACP27076.1| tRNA modification GTPase TrmE [Sinorhizobium fredii NGR234]
          Length = 439

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/439 (50%), Positives = 298/439 (67%), Gaps = 8/439 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+S+GALP+ +++IR+SG +   V   +C    P PR A+LR     +G ILD GL
Sbjct: 5   DTIYALSSGALPAGVAVIRISGSATAAVIGRLCGAL-PKPRTAALRTIRTRNGEILDSGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I FP+P SFTGED  E  VHGG AVV+ IL+ LA    LR A  GEFSRRAF+NGK+DL
Sbjct: 64  VIYFPAPASFTGEDCCELQVHGGRAVVHAILDTLAGFERLRHAEAGEFSRRAFQNGKMDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E LADLIS+ETEMQRRL++E   G  S+LY  W  +LTH R+ IEA+LDF++E+D+ 
Sbjct: 124 VEVEGLADLISAETEMQRRLAVEQAGGGQSALYQGWSRRLTHARAMIEAELDFADEDDIP 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S+ +  DI  L+ +I +H+ +  L EIIR+G KIVI G  NAGKSSL NALAK+D+A
Sbjct: 184 GSVSEMIWADIETLQAEIDAHVDRAGLAEIIRDGLKIVIAGAPNAGKSSLLNALAKRDIA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL++DL L G+ VK+ DTAG+RETD++VE+EGI+R    + +ADLILLL
Sbjct: 244 IVTEIAGTTRDVLSVDLSLAGFSVKLFDTAGLRETDELVEREGIRRAREAIGHADLILLL 303

Query: 306 KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTE--EYDHLISSFTGEGLEELINKIKSI 361
            E         P   N+  I + TK D    +    + D  +S+ TG+G+ +L+ K+K+ 
Sbjct: 304 SENPDGFAWEEPIGDNVPVIRVATKIDRSEAHWAPGQADLFLSTKTGDGITDLLEKLKAQ 363

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
           L +   +   +IPS KRH+  L Q    L  +   +   GLDI AE LRLAS +LG+ITG
Sbjct: 364 LPDLAGRTSLAIPSRKRHVDCLKQARTALARSLAVD---GLDIQAEQLRLASDALGRITG 420

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            VDVE LLD+IFS+FCIGK
Sbjct: 421 RVDVENLLDVIFSEFCIGK 439


>gi|161621425|ref|NP_387444.2| tRNA modification GTPase TrmE [Sinorhizobium meliloti 1021]
 gi|307302553|ref|ZP_07582310.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti BL225C]
 gi|307316116|ref|ZP_07595560.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti AK83]
 gi|205422307|sp|Q92KW1|MNME_RHIME RecName: Full=tRNA modification GTPase mnmE
 gi|187904240|emb|CAC47917.2| Probable thiophene and furan oxidation protein [Sinorhizobium
           meliloti 1021]
 gi|306897956|gb|EFN28698.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti AK83]
 gi|306903223|gb|EFN33813.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti BL225C]
          Length = 439

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/439 (49%), Positives = 296/439 (67%), Gaps = 8/439 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+S+G+LP+ ++IIR+SGP        +C    P PR A+LR     +G  LD GL
Sbjct: 5   DTIYALSSGSLPAGVAIIRVSGPETADALVRLCGTLPP-PRIATLRTIRTRNGETLDSGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP+P SFTGED  E  VHGG AVV+ IL+ELA    LR A  GEF+RRAF+NGK+DL
Sbjct: 64  VLYFPTPASFTGEDCCELQVHGGRAVVSAILDELAATGGLRHAEAGEFARRAFQNGKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E LADLI++ETEMQRRL++E   G  S+LY  W  +LTH R+ IEA+LDF++E+DV 
Sbjct: 124 VEVEGLADLIAAETEMQRRLAIEQSGGGQSALYAGWARRLTHSRAMIEAELDFADEDDVP 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  +  D+  L+ +I  HI++  L EIIR+G KIVI G  NAGKSSL NALA++D+A
Sbjct: 184 GSVSAVIWEDVGRLRQEIDGHIARAGLAEIIRDGLKIVIAGEPNAGKSSLLNALARRDIA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT++ GTTRDVL++DL L G+ VK+ DTAG+RETD++VE+EGI+R    + +ADL+LLL
Sbjct: 244 IVTEVAGTTRDVLSVDLSLAGFSVKLFDTAGLRETDELVEREGIRRARQVIADADLVLLL 303

Query: 306 KEINSKKEIS--FPKNIDFIFIGTKSDLYST--YTEEYDHLISSFTGEGLEELINKIKSI 361
            E      I    P+N+  I + TK D  S      + D  +S+ TGEG+ +L+  ++S 
Sbjct: 304 SEKPGHFRIDEVLPENVPVIRVATKVDRPSPSWAPSDADIFLSTRTGEGMADLLTALQSH 363

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
           L +   +   ++PS KRH+  L Q    LE  SL   D  L++ AE LR A  +LG+ITG
Sbjct: 364 LPDLAGRTALAMPSRKRHVDCLRQASAALER-SLISSD--LELRAEQLRQAGDALGRITG 420

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            VDVE LLD+IFS+FCIGK
Sbjct: 421 RVDVENLLDVIFSEFCIGK 439


>gi|327191200|gb|EGE58243.1| GTP-binding protein in thiophene and furan oxidation [Rhizobium
           etli CNPAF512]
          Length = 437

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/436 (48%), Positives = 299/436 (68%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+S+GA PS +S+IR+SGP    +   +     P  R AS R       + +D GL
Sbjct: 4   DTIYALSSGAPPSGVSVIRVSGPLTRDILVHLVGSV-PAARMASYRTIRTRYDQPVDSGL 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGEDSAE  +HG  AV+  +  EL  +P +R+A  GEFSRRAFENGK+DL
Sbjct: 63  VLFFPGPNSFTGEDSAELQIHGSKAVLAALFRELGNIPGVRMAIEGEFSRRAFENGKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E LADLI +ETEMQRRL++E  +G +S++Y  W ++LT  R+ IEA+LDF +E+DV 
Sbjct: 123 VEVEGLADLIGAETEMQRRLAVEQSAGGVSAIYDSWAERLTRARALIEAELDFPDEDDVP 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  V  D+  L+++I+ H+     GEIIR+G+K+VI G  NAGKSSL NALAK++VA
Sbjct: 183 GSVSDMVWADMARLRHEIALHLEAASAGEIIRDGFKVVIAGAPNAGKSSLMNALAKREVA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL +DLD++GYLVK+ DTAG+RE +D VE EG++R  + + +ADL+LLL
Sbjct: 243 IVTDIAGTTRDVLHVDLDIDGYLVKLYDTAGLREAEDRVEIEGVRRARVALRDADLVLLL 302

Query: 306 KEINSK-KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            +++         + +  + +GTK DL  T ++ YD  IS+ TG+GL EL   I  +++ 
Sbjct: 303 VDMSDPIVPADLEQALPHVTVGTKKDLIETGSDRYDLQISTATGDGLPELRQLIGRVVAE 362

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +F  L  +IPS +RH   L++ +  L+ A++++    L++  E LRLA+  LG+ITG VD
Sbjct: 363 RFGGLSLAIPSRQRHKDSLAKCLAALD-AAISDSAASLELRTEQLRLAAEYLGRITGRVD 421

Query: 425 VEQLLDIIFSKFCIGK 440
           VEQLLD+IFS+FCIGK
Sbjct: 422 VEQLLDVIFSEFCIGK 437


>gi|209551502|ref|YP_002283419.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209537258|gb|ACI57193.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 437

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/439 (48%), Positives = 296/439 (67%), Gaps = 9/439 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+S+GA PS +S++R+SGP    +   +     P  R A  R     + + +D GL
Sbjct: 4   DTIYALSSGATPSGVSVVRISGPLTKDILVGLVGSV-PTARYAVRRTIRNRNNQPIDSGL 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED AE  +HG  AV+  + E L ++P +R+A  GEFSRRAFENGK+DL
Sbjct: 63  VLFFPGPHSFTGEDVAELQLHGSKAVLAALFEALCELPGVRMAVEGEFSRRAFENGKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E LADLI +ETEMQRRL++E  +G LS +Y  W ++LT  R+ IEA+LDF +E+DV 
Sbjct: 123 VEVEGLADLIGAETEMQRRLAVEQSAGGLSLIYDSWAERLTRARALIEAELDFPDEDDVP 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  V  ++  L+ DI  H+S    GEIIR+G+K+VI G  NAGKSSL NALA++DVA
Sbjct: 183 GSVSDMVWAEMERLRQDIGQHLSAASAGEIIRDGFKVVIAGAPNAGKSSLLNALARRDVA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL +DLD++GYLVK+ DTAG+RE DD VE EG++R  + + +ADL+LLL
Sbjct: 243 IVTDIAGTTRDVLQVDLDIDGYLVKLYDTAGLREADDRVEMEGVRRARVALRDADLVLLL 302

Query: 306 KEINSKKEISFPKNID----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            ++ +      P ++D     + +GTK DL    +  YD  IS+ TGEGL EL   I + 
Sbjct: 303 VDMTNPL---LPDDLDQAAPHVTVGTKKDLVDVVSGHYDLQISTATGEGLSELRQVIGNS 359

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
           ++ +F  L  +IPS +RH   L++ +  LE+A ++  D  L++  E LR+A+  LG+ITG
Sbjct: 360 VATRFTGLSMAIPSRQRHKDSLAKCLTALEIA-ISATDVNLELRTEQLRIAADYLGRITG 418

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            VDVEQLL +IFS+FCIGK
Sbjct: 419 RVDVEQLLGVIFSEFCIGK 437


>gi|190893979|ref|YP_001980521.1| GTP-binding protein in thiophene and furan oxidation [Rhizobium
           etli CIAT 652]
 gi|226704784|sp|B3PS53|MNME_RHIE6 RecName: Full=tRNA modification GTPase mnmE
 gi|190699258|gb|ACE93343.1| GTP-binding protein in thiophene and furan oxidation [Rhizobium
           etli CIAT 652]
          Length = 439

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/441 (48%), Positives = 298/441 (67%), Gaps = 3/441 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI+A+S+GA PS +S+IR+SG     +  F      P  R AS R       + 
Sbjct: 1   MAMLNDTIYALSSGAPPSGVSVIRVSGTLTRDIL-FQLVGSVPAARTASYRTIRTRYDQP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GL++ FP P SFTGED+AE  +HG  AV+  +  EL  +P +R+A  GEFSRRAFEN
Sbjct: 60  VDSGLVLFFPGPNSFTGEDAAELQIHGSKAVLAALFRELGDIPGVRMAMEGEFSRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL+E E LADLI +ETEMQRRL++E  +G +S++Y  W ++LT  R+ IEA+LDF +
Sbjct: 120 GKLDLVEVEGLADLIGAETEMQRRLAVEQSAGGVSAIYDSWAERLTRARALIEAELDFPD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+DV    S  V  D+  L++DI+ H+     GEIIR+G+K+VI G  NAGKSSL NALA
Sbjct: 180 EDDVPGSVSDMVWADMARLRHDIALHLEAASAGEIIRDGFKVVIAGAPNAGKSSLMNALA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++VAIVTDI GTTRDVL +DLD++GYLVK+ DTAG+RE +D VE EG++R  + + +AD
Sbjct: 240 KREVAIVTDIAGTTRDVLHVDLDIDGYLVKLYDTAGLREAEDRVEIEGVRRARVALRDAD 299

Query: 301 LILLLKEI-NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
           L+LLL ++ N        + +  + +GTK DL  T ++ YD  IS+ TGEGL EL + I 
Sbjct: 300 LVLLLVDMSNPIIPADLEQALPHVTVGTKKDLIETASDRYDLQISTTTGEGLPELRDLIG 359

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
            ++  ++     +IPS +RH   L++ +  L+ A++++    L++  E LRLA+  LG+I
Sbjct: 360 RVVKERYGGQSLAIPSRQRHKDSLAKCLAALD-AAISQGSANLELRTEQLRLAAEYLGRI 418

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG VDVEQLLD+IFS+FCIGK
Sbjct: 419 TGRVDVEQLLDVIFSEFCIGK 439


>gi|116254463|ref|YP_770301.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. viciae
           3841]
 gi|205415801|sp|Q1MA18|MNME_RHIL3 RecName: Full=tRNA modification GTPase mnmE
 gi|115259111|emb|CAK10222.1| putative tRNA modification GTPase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 439

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/444 (47%), Positives = 297/444 (66%), Gaps = 9/444 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI+A+S+GA PS +S++R+SGP    +   +     P  R  S R     + + 
Sbjct: 1   MAMLSDTIYALSSGAPPSGVSVVRVSGPLTRDILVKLVGSV-PAARHVSHRTIRTRNNQP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GL++ FP+P SFTGED AE  +HG  AV+  +   L  +P +R+A  GEFSRRAFEN
Sbjct: 60  IDSGLVLFFPAPNSFTGEDVAELQIHGSRAVLAALFHALGDIPGVRMAVEGEFSRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL+E E LADLI +ETEMQRRL++E  +G LS++Y  W ++LT  R+ +EA+LDF E
Sbjct: 120 GKLDLVEVEGLADLIGAETEMQRRLAVEHSAGGLSAIYDSWAERLTRARALVEAELDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+DV    S  V  D+  L++DI  H++    GEIIR+G+K+VI G  NAGKSSL NALA
Sbjct: 180 EDDVPGSVSDAVWADMAKLRSDIGDHLAAASAGEIIRDGFKVVIAGAPNAGKSSLLNALA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++DVAIVT+I GTTRDVL +DLD++GYL+K+ DTAG+RE DD VE EG++R  + + +AD
Sbjct: 240 RRDVAIVTEIAGTTRDVLQVDLDIDGYLIKLFDTAGLREADDKVEMEGVRRARVALRDAD 299

Query: 301 LILLLKEINSKKEISFPKNID----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           L+LLL ++        P +++     + +GTK DL    +  YD  IS+ TG+GL EL  
Sbjct: 300 LVLLLVDMTKPL---IPDDLEQSSPHVTVGTKKDLTEVNSGRYDLQISTATGDGLPELRR 356

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
            I  I+  +F  L  +IPS +RH   L++ +  L++A L++ D  L++  E LR+A+  L
Sbjct: 357 LIGDIVERRFAGLSMAIPSRQRHKDSLAKCLAALDVA-LSQTDVNLELRTEQLRIAAEYL 415

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G+ITG VDVEQLL +IFS+FCIGK
Sbjct: 416 GRITGRVDVEQLLGVIFSEFCIGK 439


>gi|15890077|ref|NP_355758.1| tRNA modification GTPase TrmE [Agrobacterium tumefaciens str. C58]
 gi|205829053|sp|A9CHB2|MNME_AGRT5 RecName: Full=tRNA modification GTPase mnmE
 gi|15158062|gb|AAK88543.1| tRNA modification GTPase [Agrobacterium tumefaciens str. C58]
          Length = 442

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/443 (48%), Positives = 302/443 (68%), Gaps = 4/443 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI+A+S+GALP+ +++IR+SG   F     +  +  P PR ASL      +  I
Sbjct: 1   MPDSADTIYALSSGALPAGVAVIRISGAKAFIALRALTGRDLPLPRTASLCSIRNRNNEI 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+IVFP+P SFTGE+  E H HG  AV+  I  EL  +  LR A+ GEFSRRAFEN
Sbjct: 61  IDQSLVIVFPAPNSFTGENCVEIHSHGSRAVMASIFAELDNLGGLRPADAGEFSRRAFEN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DLLE E LADL+ +ETEMQRRL++E  SG+LS+LY  W ++LT  R+ IEA+LDF++
Sbjct: 121 GKMDLLEVEGLADLLQAETEMQRRLAVEQSSGQLSALYDGWANRLTRARALIEAELDFAD 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EEDV +  + +V   +  LK +I++H+  G  GEIIR+G+K+ ++G  NAGKS+L NAL+
Sbjct: 181 EEDVPDSVATQVWEAMAALKGEINAHLQGGGNGEIIRDGFKVALVGEPNAGKSTLLNALS 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++VAIVTDI GTTRDVL++D++L+GYLV+I DTAGIRET D+VE+EG++R  L  E AD
Sbjct: 241 GREVAIVTDIAGTTRDVLSVDINLDGYLVRIFDTAGIRETQDVVEREGVRRAVLTAETAD 300

Query: 301 LILLLKEINS--KKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLISSFTGEGLEELINK 357
           LIL+L++ +S  K+ I    N   + + TK+ L S  + +++D  IS+  G GL+EL   
Sbjct: 301 LILILQDNDSTPKQSIGSFDNQRSLRVRTKTLLRSRASDDDFDLSISAKEGIGLDELRRA 360

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           +K  +  +       +P+  RH   L +T+ Y+  A L+ +   L I +E LRLA+ SLG
Sbjct: 361 LKREIEKRVGSGQTLVPARARHKKRLEETLNYVSDA-LDSETLDLAIRSEYLRLAATSLG 419

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           +ITG VDVE LL +IFS+FCIGK
Sbjct: 420 RITGRVDVEDLLGVIFSEFCIGK 442


>gi|325294202|ref|YP_004280066.1| tRNA modification GTPase TrmE [Agrobacterium sp. H13-3]
 gi|325062055|gb|ADY65746.1| tRNA modification GTPase TrmE [Agrobacterium sp. H13-3]
          Length = 443

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/443 (48%), Positives = 303/443 (68%), Gaps = 4/443 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI+A+S+GALP+ ++IIR+SGP  F+    + ++  P PRKA L      +  I
Sbjct: 2   MPASADTIYALSSGALPAGVAIIRISGPGAFEAFVTLTRRDLPAPRKAVLCSIRNRNNEI 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+IVF +P SFTGE+  E H HG  AVV  I  EL  +   R A+ GEFSRRAFEN
Sbjct: 62  IDQALMIVFSAPNSFTGENCIEIHSHGSRAVVASIFAELELLEGFRPADAGEFSRRAFEN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DLLE E LADL+ +ETEMQRRL++E  +G+LS+LY  W  +LT  R+ IEA+LDF++
Sbjct: 122 GKMDLLEIEGLADLLQAETEMQRRLAVEQSTGKLSALYDGWAGRLTRARALIEAELDFAD 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EEDV +  + +V + +  L ++I++H+  G   EIIR+G+K+ ++G  NAGKS+L NAL+
Sbjct: 182 EEDVPDSVAAQVWDAMTQLHSEITNHLQNGGSSEIIRDGFKVALVGEPNAGKSTLLNALS 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +DVAIVTDI GTTRDVL++D++L+GYLV+I DTAGIRET D+VEKEG++R  L  E AD
Sbjct: 242 GRDVAIVTDIAGTTRDVLSVDINLDGYLVRIFDTAGIRETQDVVEKEGVRRAVLTAETAD 301

Query: 301 LILLLKEINS--KKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHLISSFTGEGLEELINK 357
           LIL+L++ +S  K+ I   +N   + + TK+ + S+  +  +D  IS+  G GL+EL   
Sbjct: 302 LILILQDNDSTLKQSIISLENARHLHLRTKTAISSSTVDAVFDLAISAREGVGLDELRLL 361

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           IK  + ++       +P+  RH   L +T+ Y+  A LN +   L I +E LRLA+ SLG
Sbjct: 362 IKGEIESRVGVAQTLVPARARHKKRLEETLNYVSDA-LNSETMDLAIRSEYLRLAATSLG 420

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           +ITG VDVE LL +IFS+FCIGK
Sbjct: 421 RITGRVDVEDLLGVIFSEFCIGK 443


>gi|205422319|sp|Q2K2S0|MNME_RHIEC RecName: Full=tRNA modification GTPase mnmE
          Length = 437

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/439 (49%), Positives = 299/439 (68%), Gaps = 9/439 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+S+GA PS +SI+R+SGP    +   +     P  R AS R     +   +D GL
Sbjct: 4   DTIYALSSGAPPSGVSIVRISGPLTRNILIRLAGSV-PADRSASYRTIRTRNNEPIDNGL 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED AE  +HG  AV+  +  EL  +P +R+AN GEFSRRAFENGK+DL
Sbjct: 63  VLFFPGPHSFTGEDVAELQIHGSKAVLAALFFELGDIPGVRMANEGEFSRRAFENGKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E LADLIS+ETEMQRRL++E  +G +S++Y  W  +L   R+ IEA+LDF +E+DV 
Sbjct: 123 VEVEGLADLISAETEMQRRLAVEQSAGGVSAIYDSWAKRLIRARALIEAELDFPDEDDVP 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  V  D+  L++DI  H+     GEIIR+G+K+VI G  NAGKSSL NALA++DVA
Sbjct: 183 GSVSDMVWTDMKRLRDDIGLHLKSASAGEIIRDGFKVVIAGAPNAGKSSLLNALARRDVA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL +DLD++GYLVK+ DTAG+R+ DD VE EG++R  + + +ADL LLL
Sbjct: 243 IVTDIAGTTRDVLQVDLDIDGYLVKLYDTAGLRQADDRVEMEGVRRARVALRDADLALLL 302

Query: 306 KEINSKKEISFPKNID----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            ++++      P ++D     + +GTK DL  T +  YD  IS+ TG+GL EL   I  I
Sbjct: 303 VDMSNPM---IPGDLDQTLPHVTVGTKKDLVETGSGRYDLQISTLTGDGLSELRQLIGRI 359

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
           ++ +F  L  +IPS +RH   L++ +  L+ A+++E D  L++  E LRLA+  LG+ITG
Sbjct: 360 VAERFTGLSLAIPSRQRHKDSLTKCLAALD-AAISEIDADLELRTEQLRLAAEYLGRITG 418

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            VDVEQLLD+IFS+FCIGK
Sbjct: 419 RVDVEQLLDVIFSEFCIGK 437


>gi|150398397|ref|YP_001328864.1| tRNA modification GTPase TrmE [Sinorhizobium medicae WSM419]
 gi|205415806|sp|A6UEE9|MNME_SINMW RecName: Full=tRNA modification GTPase mnmE
 gi|150029912|gb|ABR62029.1| tRNA modification GTPase TrmE [Sinorhizobium medicae WSM419]
          Length = 440

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/440 (48%), Positives = 298/440 (67%), Gaps = 9/440 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+S+G+ P+ +++IR+SGP+       +C    P  R A+LR     +  ILD GL
Sbjct: 5   DTIYALSSGSPPAGVALIRVSGPATADALARLCGPLPP-ARVATLRTIRTRNSDILDSGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED  E  VHGG AVV+ IL+ELA M  LR A  GEF+RRAF+NGK+DL
Sbjct: 64  VLYFPGPASFTGEDCCELQVHGGRAVVSAILDELAAMDGLRHAEAGEFARRAFQNGKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E LADLI++ETEMQRRL++E   G  S+LY  W  +LTH R+ IEA+LDF++E+D+ 
Sbjct: 124 VEVEGLADLIAAETEMQRRLAVEQSGGGQSALYAGWARRLTHARAMIEAELDFADEDDIP 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  +  DI  L+ +I  HI++  + EIIR+G KIVI G  NAGKSSL NALA++D+A
Sbjct: 184 GSVSAAIWTDIGRLREEIDEHIARAGVAEIIRDGLKIVIAGEPNAGKSSLLNALAQRDIA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL++DL L G+ VK+ DTAG+RETD++VE+EGI+R    + +ADL+LLL
Sbjct: 244 IVTEIAGTTRDVLSVDLSLAGFSVKLFDTAGLRETDEVVEREGIRRARQVIADADLVLLL 303

Query: 306 KEINSK---KEISFPKNIDFIFIGTKSD--LYSTYTEEYDHLISSFTGEGLEELINKIKS 360
            E  S     E    K++  I + TK D  +    T E D  +S+ TGEG+++L+  +++
Sbjct: 304 SEKPSDFRLDEWQPGKSVPVIRVATKVDRPMPRWKTSEADVFLSTRTGEGMDKLLAMLQA 363

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
            L +       S+PS +RH+  L Q    L + S+  ++  L++ AE LR A  +LG+IT
Sbjct: 364 HLPDLAGNTALSMPSRRRHVDCLRQAGAAL-VRSMEARE--LELQAEQLRQAGDALGRIT 420

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G VDVE+LLD+IFS+FCIGK
Sbjct: 421 GRVDVEKLLDVIFSEFCIGK 440


>gi|86359701|ref|YP_471593.1| tRNA modification GTPase TrmE [Rhizobium etli CFN 42]
 gi|86283803|gb|ABC92866.1| GTP-binding protein in thiophene and furan oxidation protein
           [Rhizobium etli CFN 42]
          Length = 458

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/439 (49%), Positives = 299/439 (68%), Gaps = 9/439 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+S+GA PS +SI+R+SGP    +   +     P  R AS R     +   +D GL
Sbjct: 25  DTIYALSSGAPPSGVSIVRISGPLTRNILIRLAGSV-PADRSASYRTIRTRNNEPIDNGL 83

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED AE  +HG  AV+  +  EL  +P +R+AN GEFSRRAFENGK+DL
Sbjct: 84  VLFFPGPHSFTGEDVAELQIHGSKAVLAALFFELGDIPGVRMANEGEFSRRAFENGKLDL 143

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E LADLIS+ETEMQRRL++E  +G +S++Y  W  +L   R+ IEA+LDF +E+DV 
Sbjct: 144 VEVEGLADLISAETEMQRRLAVEQSAGGVSAIYDSWAKRLIRARALIEAELDFPDEDDVP 203

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  V  D+  L++DI  H+     GEIIR+G+K+VI G  NAGKSSL NALA++DVA
Sbjct: 204 GSVSDMVWTDMKRLRDDIGLHLKSASAGEIIRDGFKVVIAGAPNAGKSSLLNALARRDVA 263

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL +DLD++GYLVK+ DTAG+R+ DD VE EG++R  + + +ADL LLL
Sbjct: 264 IVTDIAGTTRDVLQVDLDIDGYLVKLYDTAGLRQADDRVEMEGVRRARVALRDADLALLL 323

Query: 306 KEINSKKEISFPKNID----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            ++++      P ++D     + +GTK DL  T +  YD  IS+ TG+GL EL   I  I
Sbjct: 324 VDMSNPM---IPGDLDQTLPHVTVGTKKDLVETGSGRYDLQISTLTGDGLSELRQLIGRI 380

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
           ++ +F  L  +IPS +RH   L++ +  L+ A+++E D  L++  E LRLA+  LG+ITG
Sbjct: 381 VAERFTGLSLAIPSRQRHKDSLTKCLAALD-AAISEIDADLELRTEQLRLAAEYLGRITG 439

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            VDVEQLLD+IFS+FCIGK
Sbjct: 440 RVDVEQLLDVIFSEFCIGK 458


>gi|161619976|ref|YP_001593863.1| tRNA modification GTPase TrmE [Brucella canis ATCC 23365]
 gi|205829120|sp|A9M9E5|MNME_BRUC2 RecName: Full=tRNA modification GTPase mnmE
 gi|161336787|gb|ABX63092.1| tRNA modification GTPase TrmE [Brucella canis ATCC 23365]
          Length = 442

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/436 (47%), Positives = 297/436 (68%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+GL
Sbjct: 9   DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+DL
Sbjct: 68  ILFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV 
Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DVA
Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I++   GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L L
Sbjct: 248 IISKEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           ++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++    
Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG VD
Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426

Query: 425 VEQLLDIIFSKFCIGK 440
           VE++LD+IFS+FCIGK
Sbjct: 427 VEEILDVIFSQFCIGK 442


>gi|17986290|ref|NP_538924.1| tRNA modification GTPase TrmE [Brucella melitensis bv. 1 str. 16M]
 gi|225626441|ref|ZP_03784480.1| tRNA modification GTPase TrmE [Brucella ceti str. Cudo]
 gi|225853493|ref|YP_002733726.1| tRNA modification GTPase TrmE [Brucella melitensis ATCC 23457]
 gi|254707419|ref|ZP_05169247.1| tRNA modification GTPase TrmE [Brucella pinnipedialis M163/99/10]
 gi|254709039|ref|ZP_05170850.1| tRNA modification GTPase TrmE [Brucella pinnipedialis B2/94]
 gi|254713535|ref|ZP_05175346.1| tRNA modification GTPase TrmE [Brucella ceti M644/93/1]
 gi|254716110|ref|ZP_05177921.1| tRNA modification GTPase TrmE [Brucella ceti M13/05/1]
 gi|256030564|ref|ZP_05444178.1| tRNA modification GTPase TrmE [Brucella pinnipedialis M292/94/1]
 gi|256045664|ref|ZP_05448542.1| tRNA modification GTPase TrmE [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256112386|ref|ZP_05453307.1| tRNA modification GTPase TrmE [Brucella melitensis bv. 3 str.
           Ether]
 gi|256263027|ref|ZP_05465559.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 2 str. 63/9]
 gi|256370460|ref|YP_003107971.1| tRNA modification GTPase [Brucella microti CCM 4915]
 gi|260169469|ref|ZP_05756280.1| tRNA modification GTPase TrmE [Brucella sp. F5/99]
 gi|260562967|ref|ZP_05833453.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 1 str. 16M]
 gi|261217881|ref|ZP_05932162.1| tRNA modification GTPase mnmE [Brucella ceti M13/05/1]
 gi|261314904|ref|ZP_05954101.1| tRNA modification GTPase mnmE [Brucella pinnipedialis M163/99/10]
 gi|261316538|ref|ZP_05955735.1| tRNA modification GTPase mnmE [Brucella pinnipedialis B2/94]
 gi|261321269|ref|ZP_05960466.1| tRNA modification GTPase mnmE [Brucella ceti M644/93/1]
 gi|261758996|ref|ZP_06002705.1| tRNA modification GTPase mnmE [Brucella sp. F5/99]
 gi|265987612|ref|ZP_06100169.1| tRNA modification GTPase mnmE [Brucella pinnipedialis M292/94/1]
 gi|265992087|ref|ZP_06104644.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993823|ref|ZP_06106380.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 3 str.
           Ether]
 gi|81852665|sp|Q8YJS6|MNME_BRUME RecName: Full=tRNA modification GTPase mnmE
 gi|17981872|gb|AAL51188.1| thiophene and furan oxidation protein thdf [Brucella melitensis bv.
           1 str. 16M]
 gi|225618098|gb|EEH15141.1| tRNA modification GTPase TrmE [Brucella ceti str. Cudo]
 gi|225641858|gb|ACO01772.1| tRNA modification GTPase TrmE [Brucella melitensis ATCC 23457]
 gi|256000623|gb|ACU49022.1| tRNA modification GTPase [Brucella microti CCM 4915]
 gi|260152983|gb|EEW88075.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 1 str. 16M]
 gi|260922970|gb|EEX89538.1| tRNA modification GTPase mnmE [Brucella ceti M13/05/1]
 gi|261293959|gb|EEX97455.1| tRNA modification GTPase mnmE [Brucella ceti M644/93/1]
 gi|261295761|gb|EEX99257.1| tRNA modification GTPase mnmE [Brucella pinnipedialis B2/94]
 gi|261303930|gb|EEY07427.1| tRNA modification GTPase mnmE [Brucella pinnipedialis M163/99/10]
 gi|261738980|gb|EEY26976.1| tRNA modification GTPase mnmE [Brucella sp. F5/99]
 gi|262764804|gb|EEZ10725.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 3 str.
           Ether]
 gi|263003153|gb|EEZ15446.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092899|gb|EEZ17074.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 2 str. 63/9]
 gi|264659809|gb|EEZ30070.1| tRNA modification GTPase mnmE [Brucella pinnipedialis M292/94/1]
 gi|326410057|gb|ADZ67122.1| tRNA modification GTPase TrmE [Brucella melitensis M28]
 gi|326539774|gb|ADZ87989.1| tRNA modification GTPase TrmE [Brucella melitensis M5-90]
          Length = 442

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/436 (47%), Positives = 297/436 (68%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+GL
Sbjct: 9   DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+DL
Sbjct: 68  TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV 
Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DVA
Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L L
Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           ++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++    
Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG VD
Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426

Query: 425 VEQLLDIIFSKFCIGK 440
           VE++LD+IFS+FCIGK
Sbjct: 427 VEEILDVIFSQFCIGK 442


>gi|256158560|ref|ZP_05456450.1| tRNA modification GTPase TrmE [Brucella ceti M490/95/1]
 gi|256253969|ref|ZP_05459505.1| tRNA modification GTPase TrmE [Brucella ceti B1/94]
 gi|261221111|ref|ZP_05935392.1| tRNA modification GTPase mnmE [Brucella ceti B1/94]
 gi|265997072|ref|ZP_06109629.1| tRNA modification GTPase mnmE [Brucella ceti M490/95/1]
 gi|260919695|gb|EEX86348.1| tRNA modification GTPase mnmE [Brucella ceti B1/94]
 gi|262551540|gb|EEZ07530.1| tRNA modification GTPase mnmE [Brucella ceti M490/95/1]
          Length = 442

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/436 (47%), Positives = 297/436 (68%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+GL
Sbjct: 9   DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+DL
Sbjct: 68  TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV 
Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQCKLYSEWRQRLINARAFIEAELDFADESDVP 187

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DVA
Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L L
Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           ++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++    
Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG VD
Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426

Query: 425 VEQLLDIIFSKFCIGK 440
           VE++LD+IFS+FCIGK
Sbjct: 427 VEEILDVIFSQFCIGK 442


>gi|256060026|ref|ZP_05450208.1| tRNA modification GTPase TrmE [Brucella neotomae 5K33]
 gi|261324003|ref|ZP_05963200.1| tRNA modification GTPase mnmE [Brucella neotomae 5K33]
 gi|261299983|gb|EEY03480.1| tRNA modification GTPase mnmE [Brucella neotomae 5K33]
          Length = 442

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/436 (47%), Positives = 297/436 (68%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+GL
Sbjct: 9   DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+DL
Sbjct: 68  TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGYRIAEAGEFTRRAFANGKMDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV 
Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DVA
Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L L
Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           ++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++    
Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG VD
Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426

Query: 425 VEQLLDIIFSKFCIGK 440
           VE++LD+IFS+FCIGK
Sbjct: 427 VEEILDVIFSQFCIGK 442


>gi|254694684|ref|ZP_05156512.1| tRNA modification GTPase TrmE [Brucella abortus bv. 3 str. Tulya]
 gi|261215012|ref|ZP_05929293.1| tRNA modification GTPase TrmE [Brucella abortus bv. 3 str. Tulya]
 gi|260916619|gb|EEX83480.1| tRNA modification GTPase TrmE [Brucella abortus bv. 3 str. Tulya]
          Length = 442

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/436 (46%), Positives = 297/436 (68%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+GL
Sbjct: 9   DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+DL
Sbjct: 68  TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV 
Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DVA
Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L L
Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           ++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++    
Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG VD
Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IESDDLPLELRAENMRLASQFLGRITGDVD 426

Query: 425 VEQLLDIIFSKFCIGK 440
           VE++LD++FS+FCIGK
Sbjct: 427 VEEILDVMFSQFCIGK 442


>gi|23502910|ref|NP_699037.1| tRNA modification GTPase TrmE [Brucella suis 1330]
 gi|254705063|ref|ZP_05166891.1| tRNA modification GTPase TrmE [Brucella suis bv. 3 str. 686]
 gi|260567467|ref|ZP_05837937.1| tRNA modification GTPase mnmE [Brucella suis bv. 4 str. 40]
 gi|261755767|ref|ZP_05999476.1| tRNA modification GTPase mnmE [Brucella suis bv. 3 str. 686]
 gi|81741537|sp|Q8CY34|MNME_BRUSU RecName: Full=tRNA modification GTPase mnmE
 gi|23348942|gb|AAN30952.1| tRNA modification GTPase TrmE [Brucella suis 1330]
 gi|260156985|gb|EEW92065.1| tRNA modification GTPase mnmE [Brucella suis bv. 4 str. 40]
 gi|261745520|gb|EEY33446.1| tRNA modification GTPase mnmE [Brucella suis bv. 3 str. 686]
          Length = 442

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/436 (47%), Positives = 296/436 (67%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+GL
Sbjct: 9   DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+DL
Sbjct: 68  TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV 
Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DVA
Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I++   GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L L
Sbjct: 248 IISKEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           ++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++    
Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG VD
Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426

Query: 425 VEQLLDIIFSKFCIGK 440
           VE++LD+IFS+FCIGK
Sbjct: 427 VEEILDVIFSQFCIGK 442


>gi|62290906|ref|YP_222699.1| tRNA modification GTPase TrmE [Brucella abortus bv. 1 str. 9-941]
 gi|82700817|ref|YP_415391.1| tRNA modification GTPase TrmE [Brucella melitensis biovar Abortus
           2308]
 gi|189025119|ref|YP_001935887.1| tRNA modification GTPase TrmE [Brucella abortus S19]
 gi|237816411|ref|ZP_04595404.1| tRNA modification GTPase TrmE [Brucella abortus str. 2308 A]
 gi|254690194|ref|ZP_05153448.1| tRNA modification GTPase TrmE [Brucella abortus bv. 6 str. 870]
 gi|254696311|ref|ZP_05158139.1| tRNA modification GTPase TrmE [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731227|ref|ZP_05189805.1| tRNA modification GTPase TrmE [Brucella abortus bv. 4 str. 292]
 gi|256258448|ref|ZP_05463984.1| tRNA modification GTPase TrmE [Brucella abortus bv. 9 str. C68]
 gi|260546168|ref|ZP_05821908.1| tRNA modification GTPase mnmE [Brucella abortus NCTC 8038]
 gi|260755735|ref|ZP_05868083.1| tRNA modification GTPase TrmE [Brucella abortus bv. 6 str. 870]
 gi|260758959|ref|ZP_05871307.1| tRNA modification GTPase TrmE [Brucella abortus bv. 4 str. 292]
 gi|260760683|ref|ZP_05873026.1| tRNA modification GTPase TrmE [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884761|ref|ZP_05896375.1| tRNA modification GTPase mnmE [Brucella abortus bv. 9 str. C68]
 gi|297247290|ref|ZP_06931008.1| tRNA modification GTPase TrmE [Brucella abortus bv. 5 str. B3196]
 gi|75496086|sp|Q57AJ6|MNME_BRUAB RecName: Full=tRNA modification GTPase mnmE
 gi|123547323|sp|Q2YR11|MNME_BRUA2 RecName: Full=tRNA modification GTPase mnmE
 gi|62197038|gb|AAX75338.1| TrmE, tRNA modification GTPase [Brucella abortus bv. 1 str. 9-941]
 gi|82616918|emb|CAJ12019.1| ATP/GTP-binding site motif A (P-loop):Ras GTPase superfamily:tRNA
           modification GTPase TrmE:Small GTP-binding protein
           domain:G [Brucella melitensis biovar Abortus 2308]
 gi|189020691|gb|ACD73413.1| tRNA modification GTPase [Brucella abortus S19]
 gi|237788478|gb|EEP62693.1| tRNA modification GTPase TrmE [Brucella abortus str. 2308 A]
 gi|260096275|gb|EEW80151.1| tRNA modification GTPase mnmE [Brucella abortus NCTC 8038]
 gi|260669277|gb|EEX56217.1| tRNA modification GTPase TrmE [Brucella abortus bv. 4 str. 292]
 gi|260671115|gb|EEX57936.1| tRNA modification GTPase TrmE [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675843|gb|EEX62664.1| tRNA modification GTPase TrmE [Brucella abortus bv. 6 str. 870]
 gi|260874289|gb|EEX81358.1| tRNA modification GTPase mnmE [Brucella abortus bv. 9 str. C68]
 gi|297174459|gb|EFH33806.1| tRNA modification GTPase TrmE [Brucella abortus bv. 5 str. B3196]
          Length = 442

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/436 (46%), Positives = 297/436 (68%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+GL
Sbjct: 9   DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+DL
Sbjct: 68  TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV 
Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DVA
Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L L
Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           ++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++    
Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG VD
Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426

Query: 425 VEQLLDIIFSKFCIGK 440
           VE++LD++FS+FCIGK
Sbjct: 427 VEEILDVMFSQFCIGK 442


>gi|254700692|ref|ZP_05162520.1| tRNA modification GTPase TrmE [Brucella suis bv. 5 str. 513]
 gi|261751202|ref|ZP_05994911.1| tRNA modification GTPase mnmE [Brucella suis bv. 5 str. 513]
 gi|261740955|gb|EEY28881.1| tRNA modification GTPase mnmE [Brucella suis bv. 5 str. 513]
          Length = 442

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/436 (47%), Positives = 296/436 (67%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A L  F   +G  +D+GL
Sbjct: 9   DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAVLLTFRSRNGDAIDRGL 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+DL
Sbjct: 68  TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV 
Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DVA
Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L L
Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           ++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++    
Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG VD
Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426

Query: 425 VEQLLDIIFSKFCIGK 440
           VE++LD+IFS+FCIGK
Sbjct: 427 VEEILDVIFSQFCIGK 442


>gi|163844080|ref|YP_001628484.1| tRNA modification GTPase TrmE [Brucella suis ATCC 23445]
 gi|205829122|sp|B0CJG2|MNME_BRUSI RecName: Full=tRNA modification GTPase mnmE
 gi|163674803|gb|ABY38914.1| tRNA modification GTPase TrmE [Brucella suis ATCC 23445]
          Length = 442

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/436 (46%), Positives = 297/436 (68%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+GL
Sbjct: 9   DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P +FTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+DL
Sbjct: 68  TLFFPAPHTFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV 
Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DVA
Sbjct: 188 GSVSMQVWQQLSALKHEIEYHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L L
Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSLVEKIGIERARARMAEADLVLSL 307

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           ++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++    
Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG VD
Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426

Query: 425 VEQLLDIIFSKFCIGK 440
           VE++LD+IFS+FCIGK
Sbjct: 427 VEEILDVIFSQFCIGK 442


>gi|306843478|ref|ZP_07476079.1| tRNA modification GTPase TrmE [Brucella sp. BO1]
 gi|306276169|gb|EFM57869.1| tRNA modification GTPase TrmE [Brucella sp. BO1]
          Length = 442

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/436 (46%), Positives = 296/436 (67%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+GL
Sbjct: 9   DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+DL
Sbjct: 68  TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE LADLI++ETE QRRL+++  SG    LY +W  +L + R+FIEA+LDF++E DV 
Sbjct: 128 TIAEGLADLIAAETEGQRRLALQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DVA
Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L L
Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           ++++    ++  K   +   IGTK+DL    +  + + IS+ TG GLE+L++ +++    
Sbjct: 308 EDMSGPVPVTVEKIEAETWLIGTKADLGERASGLWKYRISTMTGSGLEQLLDALQAFAEA 367

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG VD
Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426

Query: 425 VEQLLDIIFSKFCIGK 440
           VE++LD+IFS+FCIGK
Sbjct: 427 VEEILDVIFSQFCIGK 442


>gi|148559809|ref|YP_001259867.1| tRNA modification GTPase TrmE [Brucella ovis ATCC 25840]
 gi|294851291|ref|ZP_06791964.1| tRNA modification GTPase TrmE [Brucella sp. NVSL 07-0026]
 gi|205829121|sp|A5VT20|MNME_BRUO2 RecName: Full=tRNA modification GTPase mnmE
 gi|148371066|gb|ABQ61045.1| tRNA modification GTPase TrmE [Brucella ovis ATCC 25840]
 gi|294819880|gb|EFG36879.1| tRNA modification GTPase TrmE [Brucella sp. NVSL 07-0026]
          Length = 442

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/436 (46%), Positives = 297/436 (68%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G LPS +++IR+SGP    V E I ++  P PR A+L  F   +G  +D+GL
Sbjct: 9   DTIFALSSGRLPSGVAVIRISGPKTRFVYETI-RQAIPEPRHAALLTFRSRNGDAIDRGL 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+DL
Sbjct: 68  TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV 
Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DVA
Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L L
Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           ++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++    
Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG VD
Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426

Query: 425 VEQLLDIIFSKFCIGK 440
           VE++LD+IFS+FCIGK
Sbjct: 427 VEEILDVIFSQFCIGK 442


>gi|241206940|ref|YP_002978036.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860830|gb|ACS58497.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 437

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/436 (47%), Positives = 293/436 (67%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+S+GALPS +S++R+SGP    +   +        R AS R     + + +D GL
Sbjct: 4   DTIYALSSGALPSGVSVVRISGPLTRDILVSLAGSVSA-ARHASHRTIRSRNNQPIDSGL 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP+P SFTGED AE  +HG  AV+  +   L  +P +R+A  GEFSRRAFENGK+DL
Sbjct: 63  VLFFPAPNSFTGEDVAELQIHGSKAVLAALFHALGDIPGVRMAVEGEFSRRAFENGKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E LADLI +ETEMQRRL++E  +G LS +Y  W ++LT  R+ IEA+LDF +E+DV 
Sbjct: 123 VEVEGLADLIGAETEMQRRLAVEHSAGGLSRIYDSWAERLTRARALIEAELDFPDEDDVP 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  V  D+  L++DI +H++    GEIIR+G+K+VI G  NAGKSSL N LA++DVA
Sbjct: 183 GSVSDMVWADMAKLRSDIENHLATASAGEIIRDGFKVVIAGAPNAGKSSLLNTLARRDVA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL +DLD++GYL+K+ DTAG+RE DD VE EG++R    + +ADL+LLL
Sbjct: 243 IVTEIAGTTRDVLQVDLDIDGYLIKLYDTAGLREADDRVEMEGVRRARAALRDADLVLLL 302

Query: 306 KEI-NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            ++ N        +    + +GTK DL     + YD  IS+ TG+GL EL   I  I+  
Sbjct: 303 VDMTNPLVPDELEQASPHVIVGTKKDLIGIAEDRYDLQISTTTGDGLPELRRLIGDIIDK 362

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +F  L  +IPS +RH   L++ +  L+ A++++ D  L++  E LR+A+  LG+ITG VD
Sbjct: 363 RFAGLSMAIPSRQRHKDSLAKCLAALD-AAISQTDVNLELRTEQLRIAAEYLGRITGRVD 421

Query: 425 VEQLLDIIFSKFCIGK 440
           VEQLL +IFS+FCIGK
Sbjct: 422 VEQLLGVIFSEFCIGK 437


>gi|254718104|ref|ZP_05179915.1| tRNA modification GTPase TrmE [Brucella sp. 83/13]
 gi|265983057|ref|ZP_06095792.1| tRNA modification GTPase mnmE [Brucella sp. 83/13]
 gi|264661649|gb|EEZ31910.1| tRNA modification GTPase mnmE [Brucella sp. 83/13]
          Length = 442

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/436 (46%), Positives = 295/436 (67%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+ L
Sbjct: 9   DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRSL 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+DL
Sbjct: 68  TLFFPTPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE LADLI++ETE QRRL+++  SG    LY +W  +L + R+FIEA+LDF++E DV 
Sbjct: 128 TIAEGLADLIAAETEGQRRLALQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DVA
Sbjct: 188 GSVSMQVWRQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L L
Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           ++++    ++  K   +   IGTK+DL    +  + + IS+ TG GLE+L++ +++    
Sbjct: 308 EDMSGPVPVTVEKIEAETWLIGTKADLGGRASGLWKYRISTMTGSGLEQLLDALQAFAEA 367

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG VD
Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426

Query: 425 VEQLLDIIFSKFCIGK 440
           VE++LD+IFS+FCIGK
Sbjct: 427 VEEILDVIFSQFCIGK 442


>gi|222150246|ref|YP_002551203.1| tRNA modification GTPase TrmE [Agrobacterium vitis S4]
 gi|221737228|gb|ACM38191.1| tRNA modification GTPase TrmE [Agrobacterium vitis S4]
          Length = 436

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/436 (47%), Positives = 292/436 (66%), Gaps = 4/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+STG+LPS +++IRLSGP    V   +C    P PR+A+LR     DG ++D+GL
Sbjct: 4   DTIFALSTGSLPSGVAVIRLSGPDVQAVLTELCGMV-PAPRQATLRSIRHRDGLVIDRGL 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED  E HVHG  AVV+ +L  LA     RLA PGEFSRRAFENGK+DL
Sbjct: 63  VLFFSGPSSFTGEDCGELHVHGSRAVVSVLLSTLASFSGCRLAEPGEFSRRAFENGKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E LADL+++ETEMQRR ++   SG  + +Y  W +KL + R+ IEA+LDF++E D+ 
Sbjct: 123 VEIEGLADLLAAETEMQRRQALAQASGHATGIYESWREKLIYGRAMIEAELDFADEGDIP 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S +V + +  L+  IS+ I   + GEIIR+G+ +VI G  NAGKSSL NALA +DVA
Sbjct: 183 GSVSDQVWDTVTDLRTQISAAIVDDRRGEIIRDGFNVVIAGPPNAGKSSLINALAGRDVA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT   GTTRD+L  D+DLEGY+V++ DTAGIRET++++E+EGI+R   +VE ADL+LLL
Sbjct: 243 IVTHYAGTTRDILQCDIDLEGYVVRLYDTAGIRETEEVIEQEGIRRALRKVEEADLVLLL 302

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIKSILSN 364
            +++S        ++ FI IGTK DL S   E   D +IS++  + ++ + + I   +  
Sbjct: 303 DDVSSPGHTINIVSVPFITIGTKLDLVSASDEIGRDLVISTYVADDVDRVRSVILDSIRK 362

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +F +    IPS  RH+  L   V +++ A L+ +   L+I A+ LRLAS SLG++ G +D
Sbjct: 363 RFSQNESVIPSRLRHIECLRNAVSFIDQA-LDGR-LSLEIRADFLRLASDSLGRLVGRID 420

Query: 425 VEQLLDIIFSKFCIGK 440
            E LL  IFS+FC+GK
Sbjct: 421 TETLLGKIFSEFCVGK 436


>gi|153008194|ref|YP_001369409.1| tRNA modification GTPase TrmE [Ochrobactrum anthropi ATCC 49188]
 gi|205415784|sp|A6WX76|MNME_OCHA4 RecName: Full=tRNA modification GTPase mnmE
 gi|151560082|gb|ABS13580.1| tRNA modification GTPase TrmE [Ochrobactrum anthropi ATCC 49188]
          Length = 442

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/437 (45%), Positives = 300/437 (68%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TIFA+S+G LPS ++++R+SGP    V E I     P PR A+ + F   +G  +D+G
Sbjct: 8   QDTIFALSSGRLPSGVAVVRISGPKVRFVLETIVGSI-PTPRYAAYKLFRSRNGDPIDRG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + FP P SFTGED AEFH+HGG AVV  +L E+ ++   R+A  GEF+RRAF NGK+D
Sbjct: 67  LALFFPGPNSFTGEDCAEFHLHGGKAVVEKLLSEMGELHGCRIAEAGEFTRRAFSNGKMD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE LADLI++ETE QRRL+++  SG    LY +W  +L   R+FIEA+LDF++E DV
Sbjct: 127 LTIAEGLADLIAAETEGQRRLALQVASGTQRELYTEWRQRLLRARAFIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S++V   +  LK++I +HI+ GK   ++R+G  +VI+G  NAGKSSL N LA ++V
Sbjct: 187 PGSVSEQVWQSLALLKSEIENHIASGKRASMLRDGLHVVIVGAPNAGKSSLLNFLAGREV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++  GTTRD+L + LDL G  V ++DTAG+RETD  VEK GI+R    + +ADL+LL
Sbjct: 247 AIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSSVEKIGIERARARMADADLVLL 306

Query: 305 LKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L+++N    ++  +  + ++ IGTK+DL +   + + + IS+ TGEGL++L+  +++   
Sbjct: 307 LEDMNDPIAVASDEIPEALWKIGTKADLNAESADCWTYRISTKTGEGLDQLLTNLQNFAE 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            +  ++  ++P+ +RH+  L  TV  ++ A +N  +  L++ AEN+RLAS  LG+ITG V
Sbjct: 367 EQIGQIEDAVPTRQRHINLLRSTVTEIDRA-INGTNLPLELRAENMRLASQYLGRITGDV 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE++LD+IFS+FCIGK
Sbjct: 426 DVEEILDVIFSQFCIGK 442


>gi|239833103|ref|ZP_04681432.1| tRNA modification GTPase TrmE [Ochrobactrum intermedium LMG 3301]
 gi|239825370|gb|EEQ96938.1| tRNA modification GTPase TrmE [Ochrobactrum intermedium LMG 3301]
          Length = 442

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/437 (45%), Positives = 293/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TIFA+S+G LPS ++++R+SGP    V E I     P PR A+ + F   +G  +D G
Sbjct: 8   QDTIFALSSGRLPSGVAVVRISGPRVRFVLETILGVL-PTPRHAAYKLFRARNGDPIDHG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGED AEFH HGG AVV  +L EL ++   R+A  GEF+RRAF NGK+D
Sbjct: 67  LVLFFPEPNSFTGEDCAEFHAHGGKAVVERLLAELGEIAGCRIAEAGEFTRRAFSNGKMD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE LADLI++ETE QRRL+++  SG    LY +W  +L   R+FIEA+LDF++E DV
Sbjct: 127 LTIAEGLADLIAAETEGQRRLALQVASGTQRELYTEWRQRLLRARAFIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S++V   +  L+ +I SHI+ GK   ++R+G  +VI+G  NAGKSSL N LA ++V
Sbjct: 187 PGSVSEQVWQSLALLRTEIESHIASGKRASMLRDGLHVVIVGAPNAGKSSLLNFLAGREV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++  GTTRD+L + LDL G  V ++DTAG+RET+ +VEK GI+R    + +ADL+LL
Sbjct: 247 AIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETESVVEKIGIERARARMADADLVLL 306

Query: 305 LKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L+++N    I        ++ +GTK+DL       + + IS+ TGEGL+ L+  +++   
Sbjct: 307 LEDMNDPVAIGTDDTPATLWTVGTKADLSEKTDGGWSYRISTRTGEGLDGLLADLQNFAE 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            +  ++  ++P+ +RH+  L  TV  ++ A LN  +  L++ AEN+RLAS  LG+ITG V
Sbjct: 367 AQIGQIEDAVPTRQRHISLLRSTVVEIDKA-LNGTNVPLELRAENMRLASQYLGRITGDV 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE++LD+IFS+FCIGK
Sbjct: 426 DVEEILDVIFSQFCIGK 442


>gi|306839729|ref|ZP_07472531.1| tRNA modification GTPase TrmE [Brucella sp. NF 2653]
 gi|306405189|gb|EFM61466.1| tRNA modification GTPase TrmE [Brucella sp. NF 2653]
          Length = 424

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/426 (46%), Positives = 286/426 (67%), Gaps = 3/426 (0%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESF 75
           +PS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+ L + FP+P SF
Sbjct: 1   MPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRSLTLFFPTPHSF 59

Query: 76  TGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLI 135
           TGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+DL  AE LADLI
Sbjct: 60  TGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLADLI 119

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++ETE QRRL+++  SG    LY +W  +L + R+FIEA+LDF++E DV    S +V   
Sbjct: 120 AAETEGQRRLALQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVWRQ 179

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DVAI+++  GTTR
Sbjct: 180 LSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVAIISEEAGTTR 239

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           D+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L L++++    ++
Sbjct: 240 DLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSLEDMSGPVPVT 299

Query: 316 FPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             K   +   IGTK+DL    +  + + IS+ TG GLE+L++ +++    K  ++  ++P
Sbjct: 300 VEKIEAETWLIGTKADLGGRASGLWKYRISTMTGSGLEQLLDALQAFAEAKIGQIEDAVP 359

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFS 434
           + +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG VDVE++LD+IFS
Sbjct: 360 TRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVDVEEILDVIFS 418

Query: 435 KFCIGK 440
           +FCIGK
Sbjct: 419 QFCIGK 424


>gi|260467199|ref|ZP_05813376.1| small GTP-binding protein [Mesorhizobium opportunistum WSM2075]
 gi|259029052|gb|EEW30351.1| small GTP-binding protein [Mesorhizobium opportunistum WSM2075]
          Length = 443

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/441 (44%), Positives = 286/441 (64%), Gaps = 8/441 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ++I A+S+G LP+ ++++R+SGP    V E I        R A+LR F   DG +LD GL
Sbjct: 5   DSIIALSSGRLPAGVAVLRISGPQTRFVVETIAGGMVK-ARAATLRAFKAPDGTVLDNGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED AEFHVHGG AVV G+L+ +A    +R A PGEF+RRAF NGK+DL
Sbjct: 64  VVFFPGPASFTGEDVAEFHVHGGRAVVAGMLQTIAGFDGVRHAEPGEFTRRAFLNGKVDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E+LADL+++ETE QRR ++    G  S LY  W  +L H R+ IEA++DF++E+DV 
Sbjct: 124 VETEALADLVNAETEAQRRFAIRNTEGAQSELYLGWRRRLIHARAMIEAEIDFADEDDVP 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  V +D+  + ++I  HI+     EIIR+G+++VILG  NAGKSSLFNALA++D A
Sbjct: 184 GSVSDAVWSDVHVMVDEIDRHIAGFHAAEIIRDGFEVVILGAPNAGKSSLFNALARRDAA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTD PGTTRD+L + LDL G  V+++DTAG+R+T   VE  GI+R   + + ADL+L+L
Sbjct: 244 IVTDEPGTTRDLLEVALDLGGLRVRLTDTAGLRDTPGKVEAIGIERARAKADRADLLLVL 303

Query: 306 KEINSKKEIS-FPKNIDFIFIGTKSDLY-----STYTEEYDHLISSFTGEGLEELINKIK 359
           +++    +I      I  + +GTK DL      +     YD +IS   G G++ L+ +I 
Sbjct: 304 EDVADPGDIGPLSAAIPALRVGTKLDLLDAQASAEAARRYDLVISVVNGAGVDALLAEIG 363

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
              ++    +   +PS  RH+  L +  R+L + +++    G ++ AE LRLA+  LG+I
Sbjct: 364 RRAADAAGDVGDVLPSRLRHVELLDEAKRHL-VRAIDSGVAGQELRAEELRLAADRLGRI 422

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
            G +DVE +LD+IFS+FCIGK
Sbjct: 423 VGAIDVEDMLDVIFSQFCIGK 443


>gi|110635800|ref|YP_676008.1| tRNA modification GTPase TrmE [Mesorhizobium sp. BNC1]
 gi|123353087|sp|Q11CN2|MNME_MESSB RecName: Full=tRNA modification GTPase mnmE
 gi|110286784|gb|ABG64843.1| tRNA modification GTPase trmE [Chelativorans sp. BNC1]
          Length = 442

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/440 (46%), Positives = 287/440 (65%), Gaps = 9/440 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TIFA+S+G+LPS I++IR+SG     V E +        R A L   +  +  +LD+ 
Sbjct: 8   RDTIFALSSGSLPSGIAVIRISGADTRAVLERMAGGLSE-ARFAKLTSIYSAEREVLDRA 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + FP+P SFTGED AE H+HGG AVV  +L ELA  P LR+A  GEF++RAF NGK++
Sbjct: 67  LCLFFPAPASFTGEDCAELHLHGGRAVVAAVLNELAAFPGLRMAEAGEFTKRAFLNGKMN 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE+L+DLI++ETE QRR ++   S     LY  W  +L H R+ IEA+LDF++E DV
Sbjct: 127 LTEAEALSDLIAAETEAQRRFALVNSSDMRKRLYDGWRRRLIHARAMIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +   V  DI  L+ +I  H S  +  EIIR+G++IVILG  NAGKSSL NALA++DV
Sbjct: 187 PGSAGATVWEDIRRLRQEIVEHASSYRKAEIIRDGFQIVILGAPNAGKSSLLNALARRDV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+ PGTTRD+L + LD++G  V ++DTAGIRE    VE  GI+R+      ADL+LL
Sbjct: 247 AIVTEEPGTTRDILEVSLDIDGTKVVLADTAGIREAAGRVEALGIERSLRRANEADLVLL 306

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLE---ELINKIKS 360
           L+++ +      P+    I IG K+DL + T    Y+ LIS+ TG GL+   ELI++  +
Sbjct: 307 LEDVTNPSTPEVPQGKPVITIGNKADLITDTPAASYNCLISAKTGLGLDRLMELISQASA 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
             SN   ++   +P  +RH+  L Q    LE A ++ ++ GL++ AE LRL+S++LG+I+
Sbjct: 367 GYSNFAGEI---LPFRERHVALLGQAADALE-AGIDGENIGLELRAECLRLSSLALGRIS 422

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G +DVE LLD IFS FCIGK
Sbjct: 423 GEIDVEDLLDAIFSTFCIGK 442


>gi|319780612|ref|YP_004140088.1| small GTP-binding protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166500|gb|ADV10038.1| small GTP-binding protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 443

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 200/444 (45%), Positives = 285/444 (64%), Gaps = 14/444 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ++I A+S+G LP+ +++IR+SGP    V E I          A  R+    DG +LD GL
Sbjct: 5   DSIVALSSGRLPAGVAVIRISGPQTRFVVETIAGTMVKDRAAALRRFRAS-DGTLLDTGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED AEFHVHGG AVV  +LE +     +R A PGEF+RRAF NGK+DL
Sbjct: 64  VVFFPGPASFTGEDVAEFHVHGGRAVVAKMLETMTGFDGVRHAEPGEFTRRAFLNGKVDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E+LADL+++ETE QRR +++   G  S LY  W  +L H R+ IEA++DF++EEDV 
Sbjct: 124 VETEALADLVNAETEAQRRFAVQNADGVQSELYLGWRRRLIHARAMIEAEIDFADEEDVP 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  V +D+  + ++I  HI+  +  EIIR+G+++VILG  NAGKSSLFNALA++D A
Sbjct: 184 GSVSDAVWSDVRTMIDEIDRHIAGFRAAEIIRDGFEVVILGAPNAGKSSLFNALARRDAA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTD PGTTRD+L + LDL+G  V+++DTAG+R+    VE  GI++   +   ADL+LLL
Sbjct: 244 IVTDEPGTTRDLLEVTLDLQGLRVRLTDTAGLRDAPGKVEAIGIEKARAKAHGADLLLLL 303

Query: 306 KEINSKKEIS-FPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEGLEELINKIK 359
            ++   +++   P     + +GTK DL         T +YD +IS   G G+EEL+ +I 
Sbjct: 304 HDMAKPRDVGELPTVAPTLLVGTKLDLIDGRAVPDATADYDLVISVEEGTGVEELLAEIG 363

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNEKDCGLDIIAENLRLASVSL 416
              S     +   +PS  RH+  L +T R+L  A+   +NE+    ++ AE LRLA+  L
Sbjct: 364 RRASESAGSVGDVLPSRLRHVELLGETNRHLHRATDGRMNEQ----ELRAEELRLAADRL 419

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G+I G +DVE +LD+IFS+FCIGK
Sbjct: 420 GRIVGAIDVEDMLDVIFSQFCIGK 443


>gi|49476318|ref|YP_034359.1| tRNA modification GTPase TrmE [Bartonella henselae str. Houston-1]
 gi|81647466|sp|Q6G1K8|MNME_BARHE RecName: Full=tRNA modification GTPase mnmE
 gi|49239126|emb|CAF28430.1| Thiophene and furan oxidizer [Bartonella henselae str. Houston-1]
          Length = 435

 Score =  366 bits (940), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 204/438 (46%), Positives = 279/438 (63%), Gaps = 7/438 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63
           +TIFAVS+G LPS +++IRLSG     V   +C      P+   + Y      DG  LD 
Sbjct: 2   DTIFAVSSGLLPSGVAVIRLSGSHVVHVVTTLCG---CLPKARFMHYGNLTARDGSFLDS 58

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L + FP+P SFTGED AEFH+HGG AVVN  L+EL+     R+A PGEFSRRAF  GK+
Sbjct: 59  ALTVFFPAPHSFTGEDCAEFHLHGGKAVVNRFLDELSTFKGCRIAEPGEFSRRAFMEGKL 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE LADLI +ETE QRRL++ G SG L++LY  W  KL  IR+FIEA+LDFS+E D
Sbjct: 119 DLVQAEGLADLIEAETESQRRLAVMGTSGRLTTLYRDWRHKLMKIRAFIEAELDFSDEAD 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           + N  S +V  D+  L   +  HI++G+   I+R+G+KIVI+G  N+GKSS+ N LA K 
Sbjct: 179 IPNTVSDKVWKDVENLCISLREHIAEGERASILRDGFKIVIVGAPNSGKSSIMNRLAGKP 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIVT+  GTTRD L + L L G  V + DTAG RETD+ +E+ GI+     V +ADL++
Sbjct: 239 VAIVTEEAGTTRDALEVRLVLGGLPVFLIDTAGFRETDNKIEQLGIEVAKQHVRDADLVI 298

Query: 304 LLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           L+ ++ + KE+  P+    I+ +G K DLY    E +    S+ TG   +  + +++S  
Sbjct: 299 LVYDMQNPKEVYLPETSAEIWRVGNKFDLYEENKEPWLIQFSALTGLNFDHFMKELESFC 358

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
             +  ++    P+ KR L  L + V+ +E  S+N     L + AE+LR AS  LGKITG 
Sbjct: 359 LRRVSEIGNLFPARKRQLQLLKEAVKEIE-NSVNYDSLDLSLRAEHLRRASDFLGKITGD 417

Query: 423 VDVEQLLDIIFSKFCIGK 440
           +DVE LLDIIFS+FCIGK
Sbjct: 418 IDVEDLLDIIFSEFCIGK 435


>gi|49474829|ref|YP_032871.1| tRNA modification GTPase TrmE [Bartonella quintana str. Toulouse]
 gi|81827572|sp|Q6FYB8|MNME_BARQU RecName: Full=tRNA modification GTPase mnmE
 gi|49240333|emb|CAF26815.1| Thiophene and furan oxidizer [Bartonella quintana str. Toulouse]
          Length = 436

 Score =  365 bits (937), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 208/444 (46%), Positives = 288/444 (64%), Gaps = 18/444 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILD 62
           +TIFAVS+G LPS +++IRLSGP    + + +C      P KA L ++  L   DG  LD
Sbjct: 2   DTIFAVSSGLLPSGVAVIRLSGPHVINIVKALCGH---LP-KARLMHYGNLTARDGSFLD 57

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
             L + FP+P SFTGED AEFH+HG  AVVN  L+EL+     R A  GEFSRRAF  GK
Sbjct: 58  SALTVFFPAPHSFTGEDCAEFHLHGSKAVVNRFLDELSTFDGCRSAEAGEFSRRAFMEGK 117

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AESLADLI +ETE QRRL++ G SG L++LY  W ++L   R+FIEA+LDFS+E 
Sbjct: 118 LDLIQAESLADLIEAETESQRRLAVMGTSGRLTTLYRDWRNRLIKARAFIEAELDFSDEA 177

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV +  S +V  D+  L   I  HI+QG+   I+R+G KIVI G  N+GKSS+ N LA K
Sbjct: 178 DVSDLISDKVWEDVEELCISIRDHIAQGERANILRDGLKIVIAGAPNSGKSSIMNRLAGK 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            VAIV +  GTTRD L I L L G  V ++DTAG+RET++ +E+ GI+     + +ADL+
Sbjct: 238 SVAIVMEEAGTTRDALEIRLVLGGLPVFLTDTAGLRETENKIEQLGIEIAKQHIVDADLV 297

Query: 303 LLLKEINSKKEISFPKNIDFIF-IGTKSDLY-----STYTEEYDHLISSFTGEGLEELIN 356
           +L+ ++ + KE++ P+    I+ +G K DLY      T+T ++    S+ TG   +  I 
Sbjct: 298 ILVYDMGNPKEVNLPETSAEIWHVGNKLDLYEEENKKTWTIQF----SALTGLNFDYFIK 353

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           +++S    +  ++    P+ KR L  L + +R +E AS+N +   L + AE+LR ASV L
Sbjct: 354 ELESFCLRRVSEIGNLFPARKRQLQLLKEAIREIE-ASINYRSLDLSLHAEHLRCASVFL 412

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           GKITG +DVE LLDIIFS+FCIGK
Sbjct: 413 GKITGDIDVEDLLDIIFSEFCIGK 436


>gi|163869379|ref|YP_001610635.1| tRNA modification GTPase TrmE [Bartonella tribocorum CIP 105476]
 gi|205829117|sp|A9IZY1|MNME_BART1 RecName: Full=tRNA modification GTPase mnmE
 gi|161019082|emb|CAK02640.1| tRNA modification GTPase [Bartonella tribocorum CIP 105476]
          Length = 435

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 197/438 (44%), Positives = 278/438 (63%), Gaps = 7/438 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63
           +TIFAVS+G LPS +++IRLSGP    + + +C      P+   + Y      DG  LD 
Sbjct: 2   DTIFAVSSGLLPSGVAVIRLSGPHVVHIVKTLCG---CLPKARFMHYGNLIARDGSFLDS 58

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L + FP+P SFTGED AEFH+HGG AVVN  L+EL+     R+A  GEFSRRAF  GK+
Sbjct: 59  ALTVFFPAPHSFTGEDCAEFHLHGGKAVVNRFLDELSTFSGCRIAEAGEFSRRAFMEGKL 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE LADLI +ETE QRRL++ G SG L++LY  W  KL  +R+FIEA+LDF++EED
Sbjct: 119 DLVQAEGLADLIEAETESQRRLAVMGTSGHLTTLYRDWRHKLMKVRAFIEAELDFADEED 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           + +  S ++  D+  L   +  HI +G+   I+R+G KIVI G  N+GKSS+ N LA + 
Sbjct: 179 IPDTISDKIWKDVEDLCTSLREHIREGERASILRDGLKIVIAGAPNSGKSSIMNRLAGRS 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIVT+  GTTRD L + L L G  + ++DTAG R+T++ +E+ GI+     V  ADL++
Sbjct: 239 VAIVTEEAGTTRDALEMRLVLGGLPIFLTDTAGFRKTENKIEQLGIEVAKQHVREADLVI 298

Query: 304 LLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           L+ +I + K++  P+    I+ +G K DLY      +    S+ TG   +  I K++S  
Sbjct: 299 LVYDIVNPKQVDLPETSAEIWRVGNKLDLYEKNDPCWSIQFSALTGLNFDCFIKKLESFC 358

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
             +  ++   +P+ KR L  L + V+ +E  SLN     L + AE+LR AS  LGKITG 
Sbjct: 359 HRRASEVGNLVPARKRQLQLLKEAVKEIE-NSLNYHSLDLSLRAEHLRRASDFLGKITGD 417

Query: 423 VDVEQLLDIIFSKFCIGK 440
           +DVE LLDIIFS+FC+GK
Sbjct: 418 IDVEDLLDIIFSEFCVGK 435


>gi|307211526|gb|EFN87614.1| tRNA modification GTPase mnmE [Harpegnathos saltator]
          Length = 434

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 195/436 (44%), Positives = 275/436 (63%), Gaps = 4/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G LPS +++IRLSG +   V + +     P PR   L  F    G +LD+GL
Sbjct: 2   KTIFALSSGLLPSGVAVIRLSGAAVKDVLQRVAGFV-PEPRMMVLATFRAESGEVLDRGL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP+P+SFTGED AEFH+HGG AVV   L+EL+  P+ R+A  GEFSRRAF  GK DL
Sbjct: 61  VVYFPAPKSFTGEDCAEFHLHGGKAVVTRFLDELSTFPDCRVAEAGEFSRRAFAEGKFDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE LADLI +ETE QRRL+M G SG L+ LY  W   L   R+ IEA+LDF++E DV 
Sbjct: 121 TEAEGLADLIHAETESQRRLAMMGASGALADLYRNWRSTLVQARAMIEAELDFADEGDVP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              +  + +++  L   + +HI      +++R+G KIVI G  NAGKSS+ N LA +DVA
Sbjct: 181 GSVADRIWDNVSQLHKAVLTHIESAARADVMRDGVKIVIAGAPNAGKSSVINRLAARDVA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+  GTTRD L I L L G  V ++DTAG+R+T++ +EK GI+     +  ADLILLL
Sbjct: 241 IVTEEAGTTRDALEIRLVLGGLPVLVTDTAGLRQTENHIEKMGIESAAARIGEADLILLL 300

Query: 306 KEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            ++++ + +  P     I+ IG K DL     + +   +S+ +G G ++ I ++      
Sbjct: 301 DDMHNPQLVELPPTEAEIWSIGNKLDLGEGDRKRWPVQLSARSGAGWQDFIGRLTVFCRK 360

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           K   +   +P  +RH   L +    L+ A  +E    L++ AE+LRLAS +LGKITG +D
Sbjct: 361 KTVDMGEIVPVRRRHTELLKRCALALQHALYDE--AALELRAEHLRLASDALGKITGDID 418

Query: 425 VEQLLDIIFSKFCIGK 440
           VE LL++IFS+FCIGK
Sbjct: 419 VEDLLNVIFSEFCIGK 434


>gi|114705491|ref|ZP_01438394.1| tRNA modification GTPase [Fulvimarina pelagi HTCC2506]
 gi|114538337|gb|EAU41458.1| tRNA modification GTPase [Fulvimarina pelagi HTCC2506]
          Length = 474

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 203/473 (42%), Positives = 278/473 (58%), Gaps = 40/473 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A+S+GALPS ++++R+SG     V         P  R+ASLR F   DG  +D G+
Sbjct: 4   DTIAALSSGALPSGVAVVRVSGAKA-NVAMTSLAGAMPPARQASLRTFRSADGVPIDTGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P + TGED AEFH+HGG AVV+  L+ +  + ++RLA  GEF+RRAFENG+IDL
Sbjct: 63  ALFFDGPNTVTGEDIAEFHLHGGRAVVSAFLQAVTHIADIRLAEAGEFTRRAFENGRIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE LADL+++ETE QRR + +   G LS++Y  W+ +LT  R+ IEA  DF++E+DV 
Sbjct: 123 TEAEGLADLLAAETEGQRRAAFDQARGALSTVYEGWMKRLTQARAMIEAGFDFADEDDVG 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +   V   +  + +DI +H+ +   GEI+R+GYK+ I+G  NAGKSSL NALA+++ A
Sbjct: 183 ENAGAGVRQAVSEICDDIRAHLQKASRGEILRSGYKVAIVGAPNAGKSSLLNALAEREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTD+PGTTRDV+++ LDL G  V + DTAGIRET D VE  G+ RT   +  A+L+L L
Sbjct: 243 IVTDVPGTTRDVISVTLDLSGVPVVLLDTAGIRETKDKVEAIGVGRTRAAMNEANLVLAL 302

Query: 306 KEINS--------KKEISFPK--------------------NIDFIFIGTKSDLYS---- 333
           ++           K  +S+ K                      D + + TK DL S    
Sbjct: 303 EDPRDAPGPLSRLKGLLSYVKPSLGPVGQALDDEESEEETLERDVLTVRTKVDLASGQKD 362

Query: 334 ----TYTEE--YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
                + EE  YD  IS+ TG G+ EL+  I             S+P   R    L  TV
Sbjct: 363 PGHGKHLEEGGYDFAISAKTGAGISELMEAISERARTAAGDPASSVPLRVRQRQLLEDTV 422

Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R LE   LN++D   +I AE LR AS  LG +TG V VE LLD+IFS+FCIGK
Sbjct: 423 RILE-EFLNDRDAPDEIAAETLRRASTRLGALTGAVGVEDLLDVIFSEFCIGK 474


>gi|240851403|ref|YP_002972806.1| tRNA modification GTPase TrmE [Bartonella grahamii as4aup]
 gi|240268526|gb|ACS52114.1| tRNA modification GTPase TrmE [Bartonella grahamii as4aup]
          Length = 435

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 192/438 (43%), Positives = 279/438 (63%), Gaps = 7/438 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63
           +TIFAVS+G LPS +++IRLSGP    + + +C +    P+   + Y      DG  LD 
Sbjct: 2   DTIFAVSSGLLPSGVAVIRLSGPHVVNIVKTLCGR---LPKARFMHYGNLTARDGSFLDS 58

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L + FP+P SFTGED AEFH+HGG AVV+  L+EL+     R+A  GEFSRRAF  GK+
Sbjct: 59  CLTVFFPAPHSFTGEDCAEFHLHGGKAVVSRFLDELSTFSGCRIAEAGEFSRRAFMEGKL 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE LADLI +ETE QRRL++ G SG L++LY  W  KL   R+FIEA+LDF +E D
Sbjct: 119 DLVQAEGLADLIEAETESQRRLAVMGTSGHLTTLYRDWRHKLMKARAFIEAELDFVDEAD 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           + N  S +V  D+  +   I  +I++G+   I+R+G KIVI G  N+GKSS+ N L+ + 
Sbjct: 179 IPNAISDKVWKDVEDICTSIREYITEGERASILRDGLKIVIAGAPNSGKSSIMNRLSGRS 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIVT+  GTTRD L + + L G  + ++DTAG R+T++ +E+ GI+     V  ADL++
Sbjct: 239 VAIVTEEAGTTRDALEMRIILGGLPIFLTDTAGFRKTENKIEQMGIEVAKQHVREADLVI 298

Query: 304 LLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           L+ +I + +++  P+    I+ +G K DLY    + +    S+ TG   +  I +++S  
Sbjct: 299 LVYDIGNPEQVDLPETSAEIWCVGNKLDLYEKNDQHWSIQFSALTGLNFDYFIKELESFC 358

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
            ++  ++   +P+ KR L  L + V+ +E  SLN     L + AE+LR AS  LGKITG 
Sbjct: 359 HHRASEIGNIVPARKRQLQLLKEAVKEIEY-SLNYHSLDLSLRAEHLRCASDFLGKITGD 417

Query: 423 VDVEQLLDIIFSKFCIGK 440
           +DVE LLDIIFS+FC+GK
Sbjct: 418 IDVEDLLDIIFSEFCVGK 435


>gi|254472335|ref|ZP_05085735.1| tRNA modification GTPase TrmE [Pseudovibrio sp. JE062]
 gi|211958618|gb|EEA93818.1| tRNA modification GTPase TrmE [Pseudovibrio sp. JE062]
          Length = 449

 Score =  352 bits (903), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 193/453 (42%), Positives = 281/453 (62%), Gaps = 17/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-LDGR 59
           MN ++ETI+AVS+GALPS +++IRLSGP    +   + K K P  R++ L+  +  +DG 
Sbjct: 1   MNTQQETIYAVSSGALPSGVAVIRLSGPQSGPILRTLIKGKFPVSRESCLKKLWDPVDGS 60

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD  L++ F  P SFTGED+ E H HGG AVV  +L  L+     R A  GEF+RRAF 
Sbjct: 61  VLDHALILWFEGPGSFTGEDTVELHCHGGRAVVAAVLRALSTFEKTRPAEQGEFTRRAFH 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N K+DL E E LADLI +ET+ QRR +   M G L  LY QW + L   R+ IEA+LDFS
Sbjct: 121 NNKLDLTEVEGLADLIDAETDAQRRQAQRQMDGALGDLYSQWRETLIRSRAMIEAELDFS 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +E+D+ +  + E+  ++  L++ I +H+S  + GE +R+G ++V+LG  NAGKSSL N L
Sbjct: 181 DEDDIPDSVADEIWVELAKLRDQIIAHLSDARRGERLRSGLQVVLLGPPNAGKSSLMNKL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A++DVAIVT   GTTRDVL + LDL GY V + DTAGIRE+  ++EKEGI+R  +  E A
Sbjct: 241 AQRDVAIVTPEAGTTRDVLEVHLDLGGYPVTLIDTAGIRESAGMIEKEGIRRALVHAEKA 300

Query: 300 DLILLLKEINSKKEISFPKNI-----DFIFIGTKSDL-----YSTY--TEEYDHLISSFT 347
           DLIL     N + E   P+++     +   + TKSDL     + ++  TEE +  +S   
Sbjct: 301 DLILWTHAPNVEAE-ELPESLLQSGAEIWRLNTKSDLGPIADHDSFETTEEIN--VSVRE 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
             G+  L++ ++S        +   + + +RH  HL+Q V  L+   +  +   +++  E
Sbjct: 358 EGGMNTLLSSLESFAERNIGLIENPLITRERHRSHLTQCVEDLDRG-IQAEGFPIELRGE 416

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LR A+  LG+ITG +DVE LLD+IF  FC+GK
Sbjct: 417 DLRRAADQLGRITGRIDVEDLLDVIFRDFCVGK 449


>gi|304392709|ref|ZP_07374649.1| tRNA modification GTPase TrmE [Ahrensia sp. R2A130]
 gi|303295339|gb|EFL89699.1| tRNA modification GTPase TrmE [Ahrensia sp. R2A130]
          Length = 429

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 193/439 (43%), Positives = 278/439 (63%), Gaps = 15/439 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G+LPS +++IRLSGP      + +  +    PRKA+L      DGR+LD+ L
Sbjct: 2   DTIFALSSGSLPSGVAVIRLSGPGALTTVKALTGRSLQ-PRKATLCRLSSDDGRVLDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED AE H HGG A V+ +L EL    +LR A PGEFSRRAF NGK+DL
Sbjct: 61  VLTFPEPASFTGEDCAELHCHGGCATVDAVLTELVTFDDLRPAEPGEFSRRAFANGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE L+DLI ++TE QR L++E M G L  LY  W   L  +R+F EA +DFS+E DV 
Sbjct: 121 TQAEGLSDLIVAQTESQRLLALEQMQGGLRELYEGWRKDLIRVRAFFEASIDFSDEGDVP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           + ++ E+ N++  ++  I +H+   + GEIIR+G+++ ++G  NAGKSSL NALAK+D+A
Sbjct: 181 DEAAAELWNEVAAIRTAIDNHLDDNRSGEIIRDGFRVALIGPPNAGKSSLLNALAKRDIA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV D  GTTRDVL   +DL G++V++ DTAG+R T++ VE+EGI+R     + ADL+L L
Sbjct: 241 IVDDEAGTTRDVLETVIDLGGHMVRLFDTAGMRNTENRVEQEGIRRAEKTADAADLVLWL 300

Query: 306 KEINSKKEISFPKNI--DFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSIL 362
           +   S   +  P+ +  + + + +K+DL     E  D L  S  + + L+ L++ +   L
Sbjct: 301 QP--STDLLVSPETVPSNAMIVRSKADL-----ENVDGLSFSVMSDDALQPLLDLLWQRL 353

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII-AENLRLASVSLGKITG 421
           ++   +      S  RH   L   V  L  A   + D   DII  E LR+AS +L +ITG
Sbjct: 354 NHAVAQREHVSLSRARHRAALLDCVAQLNEALNRQTD---DIIRCEYLRVASEALARITG 410

Query: 422 CVDVEQLLDIIFSKFCIGK 440
             DVE LLD+IFS+FC+GK
Sbjct: 411 RTDVEDLLDVIFSEFCVGK 429


>gi|13473776|ref|NP_105344.1| tRNA modification GTPase TrmE [Mesorhizobium loti MAFF303099]
 gi|81778888|sp|Q98DZ0|MNME_RHILO RecName: Full=tRNA modification GTPase mnmE
 gi|14024527|dbj|BAB51130.1| GTP-binding protein in thiophene and furan oxidation [Mesorhizobium
           loti MAFF303099]
          Length = 443

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 201/441 (45%), Positives = 280/441 (63%), Gaps = 8/441 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ++I A+S+G LP+ ++++R+SGP    V E I        R A LR F   DG +LD GL
Sbjct: 5   DSIVALSSGRLPAGVAVLRISGPQTRFVVETIAGGMVK-DRVAVLRRFKAPDGTVLDSGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I FP P SFTGED AEFHVHGG AVV  +LE ++    +R A PGEF+RRAF NGK+DL
Sbjct: 64  VIFFPGPASFTGEDVAEFHVHGGRAVVARMLEIISGFDGVRHAEPGEFTRRAFLNGKVDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E+LADL+++ETE QRR ++    G  S LY  W  +L H R+ IEA++DF++E+DV 
Sbjct: 124 VETEALADLVNAETEAQRRFAVRNAEGVQSELYLSWRRRLIHARAMIEAEIDFADEDDVP 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  V +D+  +  +I  HI+     EIIR G+++VILG  NAGKSSLFNALA++D A
Sbjct: 184 GSVSDTVWSDVRAMIGEIDRHIAGFHAAEIIREGFEVVILGAPNAGKSSLFNALARRDAA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTD PGTTRD+L + LDL G  V+++DTAG+RE    VE  GI++   + + ADL+LLL
Sbjct: 244 IVTDEPGTTRDLLEVTLDLGGLRVRLTDTAGLREAPGKVEAIGIEKARAKADRADLLLLL 303

Query: 306 KEINSKKEIS-FPKNIDFIFIGTKSDLYSTYTE-----EYDHLISSFTGEGLEELINKIK 359
           ++I +   +   P     + +GTK DL    +       YD  IS   G G+E L+ +I 
Sbjct: 304 EDILAPGVLGPLPGKAPLLRVGTKLDLLDEGSAREAAGRYDVAISVVGGTGVEALLAEIG 363

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
              ++    +   +PS  RH+  L +  R+L  A+  E   G ++ AE LRLA+ SLG+I
Sbjct: 364 RRAADAAGDVGDVLPSRLRHVELLGEANRHLLRAA-AEDAAGQELRAEELRLAADSLGRI 422

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
            G +DVE +LD+IFS+FCIGK
Sbjct: 423 VGAIDVEDMLDVIFSQFCIGK 443


>gi|121602914|ref|YP_988349.1| tRNA modification GTPase TrmE [Bartonella bacilliformis KC583]
 gi|205829116|sp|A1UQU6|MNME_BARBK RecName: Full=tRNA modification GTPase mnmE
 gi|120615091|gb|ABM45692.1| tRNA modification GTPase TrmE [Bartonella bacilliformis KC583]
          Length = 435

 Score =  350 bits (897), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 193/438 (44%), Positives = 277/438 (63%), Gaps = 7/438 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63
           +TIFAVS+G LPS +++IR+SGP    + + +C      P+   + +      DG  LD 
Sbjct: 2   DTIFAVSSGLLPSGVAVIRVSGPRVVDIVKTLCG---CLPKARFMHHGDLIARDGSFLDS 58

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L + FP P SFTGED AEFH+HGG AVVN  L+EL+     RLA  GEFSRRAF  GKI
Sbjct: 59  ALTVFFPRPHSFTGEDCAEFHLHGGKAVVNRFLDELSTFTGCRLAEAGEFSRRAFIEGKI 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE LADLI +ETE QRRL++ G +G L+ LY  W +KL   R+ IEA+LDFS+E D
Sbjct: 119 DLVQAEGLADLIEAETESQRRLAVMGANGHLTELYRHWRNKLMTARALIEAELDFSDEAD 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V NFSS +V  ++  L + +  HI++G+   I+R+G K+VI+G  N+GKSS+ N LA + 
Sbjct: 179 VSNFSSDKVWQNMQELSDSLCEHIAEGERANILRDGIKVVIVGVPNSGKSSIINRLAGRP 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIVT+  GTTRD L + L L G  V + DTAG RET+  +E+ GI      V +ADL++
Sbjct: 239 VAIVTEEEGTTRDALEVRLILGGLPVLVMDTAGFRETESKIEQLGIDIAKQHVLDADLVI 298

Query: 304 LLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           L+ ++ + ++IS P     I+ +G K D+       +    S+  G   +  + +I+S  
Sbjct: 299 LVDDMKNPQKISLPNTSAEIWRVGNKLDICEGDKTRWPIQFSALNGLNFDYFLKEIESFC 358

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
            ++  ++    P+ KR +  L + V+ ++ +S+N     L + AE+LR AS +LG+ITG 
Sbjct: 359 LHRIAEIGNIFPARKRQIQLLKEAVKEID-SSINYTFLDLSLRAEHLRRASDALGRITGD 417

Query: 423 VDVEQLLDIIFSKFCIGK 440
           +DVE LLDIIFS+FCIGK
Sbjct: 418 IDVEDLLDIIFSQFCIGK 435


>gi|319409465|emb|CBI83114.1| tRNA modification GTPase [Bartonella schoenbuchensis R1]
          Length = 435

 Score =  349 bits (896), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 188/438 (42%), Positives = 278/438 (63%), Gaps = 7/438 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63
           +TIFA+S+G LPS ++++RLSGP    + + +C      P+   + Y      DG  LD 
Sbjct: 2   DTIFALSSGLLPSGVAVVRLSGPHVVNIVKTLCG---CLPKARFMHYGNLIARDGSFLDS 58

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L + FP P SFTGED AEFH+HGG AVVN  L+EL+  P  R+A  GEFSRRAF  GKI
Sbjct: 59  ALTVFFPGPHSFTGEDCAEFHLHGGKAVVNRFLDELSAFPECRIAEAGEFSRRAFTEGKI 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE+LADLI +ETE QRRL++ G SG L+ LY  W ++L   R+ IEA++DFS+E+D
Sbjct: 119 DLIQAEALADLIEAETEGQRRLAVIGTSGHLTKLYRGWRNELITARALIEAEIDFSDEDD 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           + +  S E+  ++  L   +  HI+ G+   I+ +G ++VI+G  N+GKSS+ N LA + 
Sbjct: 179 IPDSISDEIWENMKKLSCSLCEHIAAGERANILTDGLRVVIVGAPNSGKSSIINRLAGRP 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIVT+  GTTRD L I L L G  V  +DTAG R+T+  +E+ GI+     + +ADL++
Sbjct: 239 VAIVTEEAGTTRDALEIRLILGGLPVFFTDTAGFRKTESKIEQLGIETAKQHIIDADLVI 298

Query: 304 LLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           L+ ++N+ +EI  PK    I+ +G K DLY      +    S+ +G   +  I +I+S  
Sbjct: 299 LVDDMNNPQEIHLPKTSAEIWRVGNKLDLYKGDKTPWSIQFSALSGLNFDHFIKEIESFC 358

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
             +  ++   + + KR L  L + V+ ++ AS+N     L + AE+LR AS +LG+ITG 
Sbjct: 359 LRRVAEIGNVVSAQKRQLQLLKEAVKEID-ASINHISLDLSLRAEHLRRASDALGRITGD 417

Query: 423 VDVEQLLDIIFSKFCIGK 440
           ++VE LLD+IFS+FC+GK
Sbjct: 418 INVEDLLDVIFSQFCVGK 435


>gi|319404912|emb|CBI78513.1| tRNA modification GTPase [Bartonella rochalimae ATCC BAA-1498]
          Length = 435

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 195/439 (44%), Positives = 275/439 (62%), Gaps = 9/439 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILD 62
           +TIFA+S+G LPS ++I+RLSGP    + + +C      P KA L ++  L   DG  LD
Sbjct: 2   DTIFAISSGLLPSGVAIVRLSGPRVKYIVKTLCG---CLP-KARLMHYGNLTARDGSFLD 57

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
             L + FP+P SFTGED AEFH+HG  AVVN  L+EL      RLA  GEFSRRAF  GK
Sbjct: 58  SALTVFFPAPHSFTGEDCAEFHLHGSKAVVNRFLDELTTFEECRLAEAGEFSRRAFIEGK 117

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AESLADLI +ETE QRRL++ G SG L+ LY  W   L   R+ IEA+LDFS+E 
Sbjct: 118 LDLIQAESLADLIQAETESQRRLAVMGTSGTLTKLYRDWRHILITARALIEAELDFSDEN 177

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+ N  S +V  DI  L + +  HIS G+   I+R+G KIVI+G  N+GKSS+ N L+ +
Sbjct: 178 DIPNSVSDKVWKDIKKLYHSLCEHISAGERASILRDGIKIVIVGAPNSGKSSILNRLSGR 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            VAIV++  GTTRD L + L L G LV  +DTAG+R+T++ +E  GI++    +  ADL+
Sbjct: 238 SVAIVSEEEGTTRDALEVRLVLSGLLVLFTDTAGLRKTENTIELLGIEKAKQHIVEADLV 297

Query: 303 LLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
           + + ++N+ +EI+ PK    I+ +G K DL       +    S+ +G   +  I +I+  
Sbjct: 298 IFVYDMNNPQEINLPKTSAEIWHVGNKLDLCEGNKARWPIQFSTLSGLNFDYFIKEIELF 357

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
              +  ++  +IP+ KR L  L +    +  AS+N     L + AE+LR AS  LG+I G
Sbjct: 358 CLRRATEIGDAIPARKRQLQLLKEAAEEIN-ASMNSTSLDLSLCAEHLRRASHILGRIVG 416

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            +DVE LLD+IFS+FC+GK
Sbjct: 417 DIDVEDLLDVIFSEFCVGK 435


>gi|319899518|ref|YP_004159615.1| tRNA modification GTPase [Bartonella clarridgeiae 73]
 gi|319403486|emb|CBI77066.1| tRNA modification GTPase [Bartonella clarridgeiae 73]
          Length = 435

 Score =  346 bits (888), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 192/438 (43%), Positives = 272/438 (62%), Gaps = 7/438 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63
           +TIFAVS+G LPS ++I+RLSGP    V + +C      P+   + Y      DG  LD 
Sbjct: 2   DTIFAVSSGLLPSGVAIVRLSGPHVKNVVKTLCG---CLPKARLMHYGDLIARDGSFLDS 58

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L + FP+P SFTGED AEFH+HG  AVVN  L+EL      RLA  GEFSRRAF  GK+
Sbjct: 59  ALTVFFPAPHSFTGEDCAEFHLHGSKAVVNRFLDELTTFEECRLAEAGEFSRRAFIEGKL 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AESLADLI +ETE QRRL++ G SG L+ LY  W  KL   R+ IEA+LDFS+E D
Sbjct: 119 DLIQAESLADLIQAETESQRRLAIMGTSGTLTKLYRDWRHKLMTARALIEAELDFSDEND 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           + +  S ++  DI  L + +  HIS G+   I+R+G +IVI G  N+GKSS+ N L+ + 
Sbjct: 179 IPDSVSDKIWQDIEKLYHSLCEHISAGERASILRDGIRIVIAGAPNSGKSSIINRLSGRS 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIV++  GTTRD L + L   G LV  +DTAG+R+T + +E  GI+     +  ADL++
Sbjct: 239 VAIVSEEEGTTRDALEVRLVFGGLLVFFTDTAGLRKTKNKIELLGIETAKQHIMEADLVI 298

Query: 304 LLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
            + ++N+ +E++ PK    I+ +G K DL       +    S+ +G   +  I +I+   
Sbjct: 299 SVYDMNNPQEVNLPKTSAEIWHVGNKLDLCEGDKIRWPIQFSTLSGLNFDYFIKEIELFC 358

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
           S +  ++  ++P+ KR L  L +T   +   S+N     L + AE+LR AS +LG+ITG 
Sbjct: 359 SRRVTEIGNAVPARKRQLQLLKKTAEEIN-TSINSTSLDLSLRAEHLRRASHALGRITGD 417

Query: 423 VDVEQLLDIIFSKFCIGK 440
           +DVE LLDIIFS+FC+GK
Sbjct: 418 IDVEDLLDIIFSRFCVGK 435


>gi|319407872|emb|CBI81525.1| tRNA modification GTPase [Bartonella sp. 1-1C]
          Length = 435

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 194/439 (44%), Positives = 274/439 (62%), Gaps = 9/439 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILD 62
           +TIFAVS+G LPS ++I+RLSGP    + + +C      P KA L ++  L   DG  LD
Sbjct: 2   DTIFAVSSGLLPSGVAIVRLSGPRVKYIVKTLCG---CLP-KARLMHYGNLTARDGSFLD 57

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
             L + FP+P SFTGED AEFH+HG  AVVN  L+EL      RLA  GEFSRRAF  GK
Sbjct: 58  SALTVFFPAPHSFTGEDCAEFHLHGSRAVVNRFLDELTTFEECRLAEAGEFSRRAFIEGK 117

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AESLADLI +ETE QRRL++ G SG L+ LY  W   L   R+ IEA+LDFS+E 
Sbjct: 118 LDLIQAESLADLIQAETESQRRLAVMGTSGTLTKLYRDWRHILITARALIEAELDFSDEN 177

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+ N  S +V  DI  L + +  HIS G+   I+R+G KIVI+G  N+GKSS+ N L+ +
Sbjct: 178 DIPNSVSDKVWKDIKKLYHSLCEHISAGERASILRDGIKIVIVGAPNSGKSSILNRLSGR 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            VAIV++  GTTRD L + L L G LV  +DTAG+R+T++ +E  GI++    +  ADL+
Sbjct: 238 SVAIVSEEEGTTRDALEVRLVLSGLLVLFTDTAGLRKTENTIELLGIEKAKQHIVEADLV 297

Query: 303 LLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
           + + ++N+ +EI+ PK    I+ +G K DL       +    S+ +G   +  I +I+  
Sbjct: 298 IFVYDMNNPQEINLPKTSAEIWHVGNKLDLCEGSKARWPIQFSTLSGLNFDYFIKEIELF 357

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
              +  ++  +IP+ KR L  L +    + +  +N     L + AE+LR AS  LG+I G
Sbjct: 358 CLRRATEIGDAIPARKRQLQLLKEAAEEINVF-MNSTSLDLSLCAEHLRRASHILGRIVG 416

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            +DVE LLD+IFS+FC+GK
Sbjct: 417 DIDVEDLLDVIFSEFCVGK 435


>gi|319406398|emb|CBI80039.1| tRNA modification GTPase [Bartonella sp. AR 15-3]
          Length = 435

 Score =  340 bits (872), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 189/438 (43%), Positives = 269/438 (61%), Gaps = 7/438 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63
           +TIFA+S+G LPS ++I+RLSGP    + + +C      P+   + Y      DG  LD 
Sbjct: 2   DTIFAISSGLLPSGVAIVRLSGPQVRNIVKTLCG---CLPKARLMHYGDLIARDGSFLDS 58

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L + FP+P SFTGED AEFH+HG  AVVN   +EL    N RLA  GEFSRRAF  GK+
Sbjct: 59  ALTVFFPAPHSFTGEDCAEFHLHGSKAVVNRFFDELITFENCRLAEAGEFSRRAFVEGKL 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AESLADLI +ETE QRRL++ G +G L+ LY  W  +L   R+ IEA+LDFS+E D
Sbjct: 119 DLIQAESLADLIQAETESQRRLAIIGTNGTLTKLYRDWRQRLITARALIEAELDFSDESD 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           + N  S +V  DI  L++ +  HIS G+   I+ +G +I I+G  N GKSS+ N L+ + 
Sbjct: 179 IPNSVSGKVWQDIEKLRDSLYEHISAGERASILNDGIRIAIVGAPNCGKSSIINRLSGRS 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIV++  GTTRD L + L L G  V  +DTAG+RET++ +E  GI+ T   +  ADL++
Sbjct: 239 IAIVSEEEGTTRDALEVRLILGGLPVFFTDTAGLRETENKIELLGIETTKKNIIEADLVI 298

Query: 304 LLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
            + ++N+ +E+  PK    I+ +G K DL       +    S+  G   +  I +I+   
Sbjct: 299 FVYDMNNPQEVLLPKTSAEIWHVGNKIDLCEGDKTRWPIQFSTLNGLNFDYFIKEIELFC 358

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
             +  ++   IP+ KR L  L + V  +  ASLN     L + AE+LR AS +LG+ITG 
Sbjct: 359 LRRNTEIGNVIPARKRQLQLLKEVVEEIN-ASLNSFSLDLSLRAEHLRRASHALGRITGD 417

Query: 423 VDVEQLLDIIFSKFCIGK 440
           +D+E LLD IFS+FC+GK
Sbjct: 418 IDIEDLLDTIFSRFCVGK 435


>gi|307943442|ref|ZP_07658786.1| tRNA modification GTPase TrmE [Roseibium sp. TrichSKD4]
 gi|307773072|gb|EFO32289.1| tRNA modification GTPase TrmE [Roseibium sp. TrichSKD4]
          Length = 453

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 192/453 (42%), Positives = 267/453 (58%), Gaps = 26/453 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+S+G +PS +++IR+SGP    V   +C    P  RKAS+R     +G  LD+ L
Sbjct: 9   DTIYALSSGVVPSGVAVIRVSGPETQAVVRSLCGDVPPV-RKASVRVLRDGEGTALDEAL 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED AE H HGG AVV  +L  LA     R A PGEF+RRAFE G++DL
Sbjct: 68  VLYFEGPASFTGEDVAELHCHGGRAVVAAVLNTLAGFQGCRPAEPGEFTRRAFEKGRLDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E L+DLI++ETE QRR ++  M G L +LY  W  +L H+R+ IEAD DF++EEDV 
Sbjct: 128 TEVEGLSDLIAAETEQQRRQALRQMGGALGALYEDWRKRLIHMRALIEADFDFADEEDVP 187

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV  +   L  DI+ H+   K GE +R+G ++V++G  NAGKSSL NALA +DVA
Sbjct: 188 GSVADEVWAEADQLARDIAGHLETSKSGERLRSGLQVVLMGAPNAGKSSLLNALAGRDVA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+  GTTRDV+ + LDL GY V + DTAG+R+TD IVE+EGI+R       ADLIL  
Sbjct: 248 IVTEEAGTTRDVIEVHLDLGGYPVTLIDTAGLRQTDGIVEREGIRRAEERGRGADLILWA 307

Query: 306 KEINSKK--------EISFPKNIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEGL 351
            E    K        + S   ++    + TK D            EE   L S+    G+
Sbjct: 308 VEPEGVKPSDPDSGLDDSIRSSVPVRSVRTKQDEIRFDIRLDQSAEEI--LCSTKVEGGM 365

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT----VRYLEMASLNEKDCGLDIIAE 407
            +L++ +              + +  RH Y L++     ++ +E+  L E     ++ AE
Sbjct: 366 RDLLDFLTRFAQETISISEAPLATRARHRYFLNEAHACLIKAVELKHLPE-----ELRAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LR A+ +LG+ITG +DVE LLD+IF  FCIGK
Sbjct: 421 DLRQAADALGRITGRIDVEDLLDVIFRDFCIGK 453


>gi|90421001|ref|ZP_01228905.1| putative tRNA modification GTPase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334779|gb|EAS48555.1| putative tRNA modification GTPase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 473

 Score =  335 bits (858), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/476 (40%), Positives = 271/476 (56%), Gaps = 39/476 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M H  +TI A+S+G LP+ ++++R+SGP+   V E +     P  R+ASLR F     R 
Sbjct: 1   MTH-SDTIAALSSGTLPAGVAVVRVSGPAARDVMERLAGSVPP-ERRASLRRFRDAADRT 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + FP P S TGED AEFH+HGG AVV   LE    +P +RLA  GEF+RR FEN
Sbjct: 59  IDRGIALFFPGPGSVTGEDLAEFHLHGGRAVVAAFLEAATGIPGVRLAVAGEFTRRGFEN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL EAE LADL+++ TE QRR+++    G L SLY  W+  LT+ R+ IEA  DF++
Sbjct: 119 GRIDLTEAEGLADLLAASTEAQRRMAVAQAGGALRSLYEGWMRDLTNARAMIEASFDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV +  +  V   +  +   + +H+++   GEI+R G+K+ I+G  NAGKSSL NALA
Sbjct: 179 EGDVDDDVASGVERQVAVVAAAMRAHLAKADRGEILREGFKVAIVGAPNAGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++VAIVT+IPGTTRDV+   LDL G  V+ SDTAGIRET D +E  GI+R    ++ AD
Sbjct: 239 DREVAIVTEIPGTTRDVIEATLDLGGIPVRFSDTAGIRETADRIEAMGIERARGVMDEAD 298

Query: 301 LILLLKEINSKK-----------EISFP-------------------KNIDFIFIGTKSD 330
           L+L L + ++              +  P                    +   + I TK D
Sbjct: 299 LVLALVDPHAGPTTLEWLSGLLTHVKHPLMLAGHEPASEEAHENRSTSSRPILTIRTKID 358

Query: 331 L------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                     +  + D  IS+ TGEGL +L+++I  I +         +P+  RH   + 
Sbjct: 359 QDKLTGGAPPHAPDCDLTISTRTGEGLADLVDRIAEIAATAVGDPDDVVPARTRHRELIG 418

Query: 385 QTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +R L        D   ++ AE LR  S  LG +TG V VE LL++IF++FCIGK
Sbjct: 419 DALRLLTEFQ-AAPDMPAEVRAETLRRTSHRLGALTGQVGVEDLLEVIFAEFCIGK 473


>gi|328541700|ref|YP_004301809.1| tRNA modification GTPase mnmE [polymorphum gilvum SL003B-26A1]
 gi|326411452|gb|ADZ68515.1| tRNA modification GTPase mnmE [Polymorphum gilvum SL003B-26A1]
          Length = 450

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/450 (40%), Positives = 266/450 (59%), Gaps = 17/450 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64
           +TI+A+S+G +P+ +++IR+SGP   ++   +   K P PR+ +L      D G  +D+ 
Sbjct: 3   DTIYALSSGPVPAGVAVIRVSGPLTVEIVRKL-SGKAPTPRRIALGLLRRPDTGEAIDQA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F  P SFTGED AEF  HGG AVV  +LE LA  P  R A  GEF+RRAF+NG++D
Sbjct: 62  VVLFFKGPSSFTGEDVAEFQCHGGRAVVAAVLECLAAFPGTRPAEAGEFTRRAFDNGRMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI++ETE QRR +   M G L  LY  W  +L  +R+ IEAD DF++EEDV
Sbjct: 122 LTEVEGLADLIAAETEAQRRQAFRQMEGWLGRLYDGWRGRLVQMRAMIEADFDFADEEDV 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               +  V +    L  DI +H+ Q   GE +R G ++V++G  NAGKSSL NALA +DV
Sbjct: 182 PGSVADGVWDAAAGLLRDIDAHLEQSGRGERLRQGLQVVLMGAPNAGKSSLLNALAGRDV 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+  GTTRDV+ + LDL+GY V ++DTAG+R     VE+EGI+R       ADLIL 
Sbjct: 242 AIVTEEAGTTRDVIEVHLDLDGYPVTLADTAGLRAEAGRVEREGIRRATERGRGADLILW 301

Query: 305 LKE---------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-----ISSFTGEG 350
             E         +    E      +    + TK+DL +    +   +     +S+ TG G
Sbjct: 302 AAEPGGPLPEDPLEGLPEAVRAAGVPVWMLRTKTDLVTPPERDSSEMSLVIPVSTQTGMG 361

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           ++ L++++    +         + + +RH +HL+        A++  +    ++ AE+LR
Sbjct: 362 IKSLLDRLSCFATETLSLGEAPLATRQRHRFHLAACR-DALAAAVASRGLPAELRAEDLR 420

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A+ +LG+ITG +DVE LLD+IF +FCIGK
Sbjct: 421 RAADALGRITGRIDVEDLLDVIFREFCIGK 450


>gi|163757466|ref|ZP_02164555.1| putative tRNA modification GTPase [Hoeflea phototrophica DFL-43]
 gi|162284968|gb|EDQ35250.1| putative tRNA modification GTPase [Hoeflea phototrophica DFL-43]
          Length = 395

 Score =  333 bits (853), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 175/383 (45%), Positives = 249/383 (65%), Gaps = 5/383 (1%)

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL++ FP+P SFTGED AE H+HG  A V  +L  L  +   RLA PGEF+R+AFEN
Sbjct: 15  LDRGLVLFFPAPHSFTGEDVAELHIHGSRASVAAVLMALTDLDGFRLAEPGEFTRQAFEN 74

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL E E L+DLI +ETE QRR ++    G L SLY  W  +LTH R+ IEA+LDFS+
Sbjct: 75  GKLDLTEVEGLSDLIRAETESQRRQALLQADGVLRSLYEGWARRLTHARAMIEAELDFSD 134

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+D+    S ++  D+  L  +I SH+      E++R+GY+I ++G  NAGKSSL N L+
Sbjct: 135 EDDIPGSVSDQIWKDMGLLLAEIRSHLECASAAEVVRDGYRIALIGPPNAGKSSLLNYLS 194

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K+DVAIV+DIPGTTRDV+ + LD+ GYLV + DTAG+RE+ D +E EGI+R+ +  E+AD
Sbjct: 195 KRDVAIVSDIPGTTRDVVEVRLDIAGYLVVLQDTAGLRESSDQIEIEGIRRSLIAAEDAD 254

Query: 301 LILLLKEINSKKEISFPKNI-DFIFIGTKSD-LYSTYTEEYDHL-ISSFTGEGLEELINK 357
           L+L L E      +  P  + + I I TK D L   +T +     IS+ TG G+++L+  
Sbjct: 255 LVLELHEFGVPGRV-VPSGVNERIEIVTKVDCLDEPFTADDAAFGISTLTGAGIDKLLEA 313

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           I   L N        +P+  RH+  L   V  +E+A +   +  +++ +E LR A+ S+G
Sbjct: 314 ISERLENLAPSGEMGLPTRARHVDLLQDCVTAIEVA-MKSAEAPIEVRSEYLRHAANSMG 372

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           +ITG VDVE LL ++FS+FC+GK
Sbjct: 373 RITGMVDVEDLLGVVFSEFCVGK 395


>gi|118591441|ref|ZP_01548839.1| tRNA modification GTPase [Stappia aggregata IAM 12614]
 gi|118436113|gb|EAV42756.1| tRNA modification GTPase [Stappia aggregata IAM 12614]
          Length = 449

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 187/453 (41%), Positives = 275/453 (60%), Gaps = 24/453 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFGLDGRILD 62
           +TIFA+S+GA+PS ++++R+SGP    + E +  +  P PRK   A LR+     G +LD
Sbjct: 3   DTIFALSSGAVPSGVAVLRVSGPKTRGIVEALAGRV-PEPRKTMLAKLRHPE--TGDVLD 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L++ F  P SFTGED AEF  HGG AVV+G+L  L+  P  R A  GEF+RRAF+ G+
Sbjct: 60  EALVLYFEGPASFTGEDVAEFQCHGGRAVVSGLLSVLSTFPQCRPAEAGEFTRRAFDRGR 119

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL E E LADLI++ETE QR+ ++  M G L  LY  W  +L H+R+ IEAD DF++EE
Sbjct: 120 MDLTEVEGLADLIAAETESQRKQAVRQMGGALGKLYDDWRKRLIHMRAMIEADFDFADEE 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV    + EV ++   L  +I+ H+ + + GE +R+G ++V++G  NAGKSSL NA+A +
Sbjct: 180 DVPGSVADEVWSEARQLHAEIAEHLEKSRSGERLRSGLQVVLMGAPNAGKSSLLNAIAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +VAIVT+  GTTRDV+ + LDL GY V + DTAG+R+T+ +VEKEGI+R       ADLI
Sbjct: 240 EVAIVTEEAGTTRDVIEVHLDLSGYPVTLVDTAGLRQTEGVVEKEGIRRAEERGRGADLI 299

Query: 303 LLLKEINSKKE----ISFPKN----IDFIFIGTKSDL-------YSTYTEEYDHLISSFT 347
           L   E    +        P +    +    + TK+DL        S  T+E     SS +
Sbjct: 300 LWAVEPGGVEHDDAGAGLPSDLRSSVPVWTVRTKADLETLPKQDSSGTTQEI--ACSSKS 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
            EG+  L  ++              + + +RH ++L+  +  L  A+++      ++ AE
Sbjct: 358 VEGMNPLFFRLTRFAEETISLGEAPLATRERHRHYLNDCLSGLR-AAVDMDHLPAELRAE 416

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LR A+ +LG+ITG +DVE LLD+IF  FCIGK
Sbjct: 417 DLRKAADALGRITGRIDVEDLLDVIFRDFCIGK 449


>gi|300024783|ref|YP_003757394.1| tRNA modification GTPase TrmE [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526604|gb|ADJ25073.1| tRNA modification GTPase TrmE [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 444

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 185/435 (42%), Positives = 256/435 (58%), Gaps = 4/435 (0%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGL 65
           TIFA+S+    +A+S+IR+SGP+   V E +     P PR A+ R     D G  LD+ +
Sbjct: 13  TIFALSSAPGRAALSVIRISGPAVRNVLETMTAPV-PKPRVAAFRTIRHPDTGEALDRAV 71

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +P S TGED AEF  HG  A V  IL  L  +   RLA PGEF+RR FENGK+DL
Sbjct: 72  VLWFAAPNSETGEDVAEFQGHGSRAAVAAILGALGTVKGCRLAEPGEFARRGFENGKMDL 131

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E L DLI +ETE QRR ++   SG LS LY  W  +L  I +  EA +DFS+E DV 
Sbjct: 132 AEIEGLGDLIEAETEAQRRQALAQSSGTLSKLYESWRTRLIEIAALTEAAIDFSDEGDVS 191

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  +       L  +I +H+  G  GEI+R+G+++ +LG  NAGKSSL NALAK+D A
Sbjct: 192 ASSFADARKRADALSAEIGAHLDDGHRGEIVRDGFRVALLGAPNAGKSSLLNALAKRDAA 251

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++  GTTRDV+ + LDL G  V +SDTAGIRE + +VE+EGI+R+     +ADL++ L
Sbjct: 252 IVSEEAGTTRDVIEVRLDLAGLPVVVSDTAGIREAESLVEQEGIRRSLAAARDADLVVWL 311

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E               + I +K+DL    T +    +S+ TGEGL+ L+ +I    S  
Sbjct: 312 SEAGDSTPPEPISRETSLAIRSKADLCRESTADL-LAVSAVTGEGLDRLVAEIARRASEA 370

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425
                    +  RH   L +  R    A LN     +++ AE++R A+ ++G+ITG VDV
Sbjct: 371 VGTRTDPALTRVRHRQSL-EAARDEIQAFLNGDSGAVELRAEDVRRAAHAIGRITGRVDV 429

Query: 426 EQLLDIIFSKFCIGK 440
           E +LD +FS+FCIGK
Sbjct: 430 EDVLDQVFSRFCIGK 444


>gi|323135828|ref|ZP_08070911.1| tRNA modification GTPase TrmE [Methylocystis sp. ATCC 49242]
 gi|322398919|gb|EFY01438.1| tRNA modification GTPase TrmE [Methylocystis sp. ATCC 49242]
          Length = 434

 Score =  322 bits (826), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 184/437 (42%), Positives = 258/437 (59%), Gaps = 8/437 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQV-CEFICKKKKPFPRKASLRYFFG-LDGRILDK 63
           +TIFA+ TGA  +AI++IRLSGP    V  EF      P PR A L       DG  LD+
Sbjct: 4   DTIFALGTGAGRTAIAVIRLSGPGVRAVLSEF--AGSTPEPRVARLVELRDPRDGETLDR 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GL I FP+P S TGED AEFHVHGG AVV G+L  L++ P LR A PGEF+RR F NGK+
Sbjct: 62  GLTIFFPAPHSATGEDYAEFHVHGGRAVVGGVLAALSRRPGLRSAEPGEFARRGFANGKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE+LADL+ ++TE QRR ++    G L      W   L    + +EA+LDFS+E D
Sbjct: 122 DLSQAEALADLVDAQTEAQRRQALRIAGGALRRRVEAWRAALIEALALVEAELDFSDEGD 181

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V  FS+  +   +  + ++I + +      E +R+G+ ++ILG  NAGKS+L NALA++D
Sbjct: 182 VSVFSADRLEALLQPVLSEIRAALEDAPASERMRDGFLVMILGAPNAGKSTLLNALARRD 241

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIV+  PGTTRD++   LDL G  V   DTAG+RE +D +EK G+ R    V  ADL+L
Sbjct: 242 LAIVSPTPGTTRDMIEAHLDLGGLPVTFVDTAGLREAEDEIEKIGVDRVVERVGTADLVL 301

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
            L E   +  +    NID + + +K DL+ +        I + +  GL+ L+N+I     
Sbjct: 302 WLSEKGEEPSLDALGNIDLLRVWSKCDLHQSAQGWLG--ICATSSLGLDSLLNEIADRAG 359

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            +      ++   +RH        + +  A   EKD  L+ +A++LR A  SLG+I G V
Sbjct: 360 ARLGDGASALLIRERHRRAAEDAGKMIAAALAPEKD--LEFVADDLRSAGRSLGRIVGSV 417

Query: 424 DVEQLLDIIFSKFCIGK 440
           +VE +LD +FS FCIGK
Sbjct: 418 EVEDVLDAVFSHFCIGK 434


>gi|163796498|ref|ZP_02190458.1| tRNA modification GTPase TrmE [alpha proteobacterium BAL199]
 gi|159178348|gb|EDP62892.1| tRNA modification GTPase TrmE [alpha proteobacterium BAL199]
          Length = 444

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 174/440 (39%), Positives = 264/440 (60%), Gaps = 7/440 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T    + I++IRLSGP+ F   E +  +     R +        DG  LD  +
Sbjct: 7   DTIAALATAPGRAGIAVIRLSGPAAFGAVEALTGRVPTVRRMSRALLRDPRDGEALDDAM 66

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            +VFP P SFTGED AEFH+HGG AVV+G+L  L ++P +R A+PGEF+RRAF N ++DL
Sbjct: 67  AVVFPGPASFTGEDVAEFHLHGGRAVVDGVLGALLRLPGVRPADPGEFTRRAFLNDRLDL 126

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE++ DL+ +ET  QRR ++   SG L+ +Y  W   L    + ++A +DF  +ED+ 
Sbjct: 127 TAAEAVLDLVDAETAAQRRQALRQASGSLAGIYDDWRTALVMAMARLDAWIDFP-DEDLP 185

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
               + V+ D+  L   +  H++    GE +R G ++ I+G  NAGKSSL N LA++DVA
Sbjct: 186 ADVVEGVIEDLEGLAKALEGHLADAGRGERLREGLRMAIVGPPNAGKSSLLNWLAQRDVA 245

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+   GTTRDVL + LD+EGY   ++DTAG+RET D VE EG++R     E+ADL L++
Sbjct: 246 IVSATAGTTRDVLEVYLDIEGYPATVADTAGLRETADSVEAEGVRRALARAEDADLRLVV 305

Query: 306 KEINS----KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            + ++    ++ I+   + D I I  K D   +  E +   +S  TG+GL+ L+N+I   
Sbjct: 306 VDWSASSVDREGIARWLDGDAIAIANKIDRGGSPPEPWIP-VSVTTGQGLDALMNRIAVE 364

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKIT 420
           L  +         +  RH +   + +  +  A    +    L++ AE+LRLA+ +LG+IT
Sbjct: 365 LEARMAVREAPTLTRARHRHAAQEALEGVRRARDGLQGGVPLELPAEDLRLAARALGRIT 424

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G VDVE+LLD+IF +FC+GK
Sbjct: 425 GKVDVEELLDVIFREFCLGK 444


>gi|83944969|ref|ZP_00957335.1| tRNA modification GTPase [Oceanicaulis alexandrii HTCC2633]
 gi|83851751|gb|EAP89606.1| tRNA modification GTPase [Oceanicaulis alexandrii HTCC2633]
          Length = 443

 Score =  319 bits (817), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 173/450 (38%), Positives = 272/450 (60%), Gaps = 24/450 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETIFA+++    S +++IR+SGP    V + +    +P PR A+LR F   +G ++D+GL
Sbjct: 3   ETIFALASAPGRSGVAVIRVSGPETGAVLDAVAGLPRPKPRLAALRAFRTGEGAVIDQGL 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGE+ AEFHVHGG AV+  + E   ++  +R A  GEF+RRAF+NGK+DL
Sbjct: 63  ALWFEGPASFTGENCAEFHVHGGTAVIEAMAERFLEL-GVRPAEAGEFTRRAFQNGKMDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE LADLI +ETE QR  ++  M+G L SLY  W ++L  + + IE ++DF +EEDV 
Sbjct: 122 TEAEGLADLIDAETEGQREQALSQMTGALRSLYEDWREQLISVLAAIEGEVDFPDEEDVP 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S+     +  L + +++H+  G+ GE +R G+ I ++G  NAGKS+L NALA++D A
Sbjct: 182 ETLSETAGPPLAMLSDALTAHLEDGRRGERVREGFSIALIGEPNAGKSTLLNALARRDAA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDIPGTTRDV+ + L L G+ V ++DTAG+R+  D VE EG++R     +NADL L +
Sbjct: 242 IVTDIPGTTRDVVEVRLVLAGFPVIVADTAGLRDAADQVEAEGVRRALDRAQNADLRLGV 301

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-----HL----------ISSFTGEG 350
            +++ +   + P  +    + T +D  +    + D     HL          +S+ +G G
Sbjct: 302 VDVSRE---TLPAKL----LETLTDADALILNKMDQGQTLHLSDELGMTRFELSAKSGLG 354

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           L  L   ++ ++ ++  +      S  RH   + + + +L MA+ ++     ++ A ++ 
Sbjct: 355 LPALEGWLEEVVRDRLSRREAPALSRARHRQAVERALDHL-MAAQSQLARAPELAASDVH 413

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  +L  +TG +DVE +LD +FS+FCIGK
Sbjct: 414 LAIRALESLTGRIDVEDVLDRVFSQFCIGK 443


>gi|299133195|ref|ZP_07026390.1| tRNA modification GTPase TrmE [Afipia sp. 1NLS2]
 gi|298593332|gb|EFI53532.1| tRNA modification GTPase TrmE [Afipia sp. 1NLS2]
          Length = 439

 Score =  318 bits (816), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 174/441 (39%), Positives = 260/441 (58%), Gaps = 3/441 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M  +  TI+A+++G  PSAI+I+R+SGP      E +C +  P PR A+L      +   
Sbjct: 1   MPFQLPTIYALASGRPPSAIAIVRVSGPRAAATLESLCGRL-PRPRTATLTTLTSPETGP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ + + FP+P S TGED AEF +HGG AV+  +   L K+  LR A PGEF+RRAFEN
Sbjct: 60  IDQAVALWFPAPHSATGEDVAEFQLHGGRAVIAALFAALGKIEGLRPAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++T+ QRR ++  + G L      W  ++    + +EA +DFS+
Sbjct: 120 GKLDLTEAEGLDDLIHADTDRQRRQALRHLQGLLGHRAQTWRKQIIEAMALVEAGIDFSD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV        +  +  LK++I   ++     E +R G ++ I G  NAGKS+L N LA
Sbjct: 180 EGDVSAELMAPAMQRVAALKSEIQEILAASAQSERLREGLQVAIAGPPNAGKSTLLNRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIV+   GTTRDV+ + LDL+GY V + DTAG+RET+D VE+EG++R     E+AD
Sbjct: 240 RREAAIVSPYAGTTRDVIEVHLDLDGYPVTLIDTAGLRETNDPVEQEGVRRARARAESAD 299

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIK 359
           L+L + E                 +  K DL +T T+ E    IS+ TG+G++ ++  + 
Sbjct: 300 LVLWMCEAGDDAPPPLADGAPLWVVRNKIDLAATPTKGEGGFAISAATGQGVDAVVGSLV 359

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
               + F     ++ S  RH   L++TV  LE A     + G +I+AE LR+A  +LG++
Sbjct: 360 DFARDTFGGGEAALVSRARHRALLTETVEALERAGQRGGE-GDEIVAEELRIAIHALGRL 418

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
            G VDVE++LD IF +FCIGK
Sbjct: 419 LGRVDVEEILDSIFREFCIGK 439


>gi|114326676|ref|YP_743833.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Granulibacter bethesdensis CGDNIH1]
 gi|122328339|sp|Q0BW92|MNME_GRABC RecName: Full=tRNA modification GTPase mnmE
 gi|114314850|gb|ABI60910.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Granulibacter bethesdensis CGDNIH1]
          Length = 440

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 180/447 (40%), Positives = 266/447 (59%), Gaps = 20/447 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +ETIFA+++GA  +AI++IR+SGP+       +C    P  RK+SLR      G ILD+G
Sbjct: 3   QETIFALASGAGRAAIAVIRISGPATRNTVTHLCGTLPP-QRKSSLRRLRNRSGEILDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F  P SFTGED AE H+HGG AV+ G+ + L  +  LR A  GEF+RRAF NGK+D
Sbjct: 62  IILWFAGPGSFTGEDCAELHLHGGNAVIEGMADALVDL-GLRPAEAGEFTRRAFLNGKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE++ADLI +ET  QRR +++ + G LS     W   LT + ++ E  +DF +E D+
Sbjct: 121 LTEAEAVADLIDAETSAQRRQALQQLDGGLSRQLETWTATLTRVLAWQETLIDFPDE-DL 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                  +  D+L L+ +++  +++G   E +R G    ILG  NAGKSSL N+LA +D 
Sbjct: 180 PAEVDAALRTDLLLLRQEMAQALNEGAKAEKLREGLIFTILGKPNAGKSSLLNSLASRDA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+  PGTTRD + + L L G  V + DTAG+R++ D +E EG++R     E+ADL+L 
Sbjct: 240 AIVSSQPGTTRDTIEVRLVLAGVPVTLIDTAGLRDSADSIEAEGVRRALARAESADLVLR 299

Query: 305 LKEINSKKEISF-----PKNIDF--IFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELIN 356
             +I++  E  F     P + +   + IGTKSDL  T     D  L+S+ TG+G+E L  
Sbjct: 300 TVDISTATEADFSAEQWPGSSEARSLMIGTKSDLPYTPPSSPDIVLVSTLTGDGMERLKT 359

Query: 357 KIKS---ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
            +++    L++     P +   H+  L    Q +   E A L E      + AE +RLA 
Sbjct: 360 MLEAEARALTSHATGAPLTRARHRAALQDAIQHLEDAESARLEE------LRAEEIRLAR 413

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++G++TG + VEQ+LD +FS FCIGK
Sbjct: 414 QAVGRVTGQIGVEQILDHVFSSFCIGK 440


>gi|158426332|ref|YP_001527624.1| tRNA modification GTPase TrmE [Azorhizobium caulinodans ORS 571]
 gi|205829055|sp|A8I264|MNME_AZOC5 RecName: Full=tRNA modification GTPase mnmE
 gi|158333221|dbj|BAF90706.1| small GTP-binding protein [Azorhizobium caulinodans ORS 571]
          Length = 435

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 175/443 (39%), Positives = 264/443 (59%), Gaps = 11/443 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD--- 57
           M    +TIFA+S+G +PS ++++R SGP   +    +     P PR A  RY    +   
Sbjct: 1   MTRSSDTIFALSSGRVPSGVAVVRASGPRAREAGLALAGLVPP-PRVA--RYVALREPGT 57

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G +LD+GL++ FP P S TGED+ E H+HGG AVV  +L  L K+P  R A  GEF+RRA
Sbjct: 58  GDLLDRGLILFFPGPRSATGEDTLELHLHGGPAVVTAVLRTLVKLPGFRPAAAGEFTRRA 117

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
             NGK+DL E E LADLI +E+E QRR ++   SG LS     W ++L    + +EA +D
Sbjct: 118 HANGKMDLAEVEGLADLIVAESEAQRRQALAQSSGALSRAVAGWRERLIRALALVEATID 177

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FS+E DV +  +     +   L  ++++ ++    GE +R+G+ I I G  NAGKS+L N
Sbjct: 178 FSDEGDVPDDLTGPARAEAAALCTELTTALADADRGERVRDGFIIAIAGPPNAGKSTLLN 237

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            LA ++ AIV+ +PGTTRDVL + L L G  V + DTAG+RETDD+VE EG++R  +  E
Sbjct: 238 RLAGREAAIVSPVPGTTRDVLEVHLHLAGQAVTLVDTAGLRETDDLVEAEGVRRARVRAE 297

Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            +DL+L L +  +      P     + + TK+D+     EE + +IS+ TG G+  LI +
Sbjct: 298 GSDLVLWLSDDGTAPPTDMPAP---LRVRTKADVTGAEGEEDEIVISAQTGAGINTLIAE 354

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           ++  L       P ++ + +R  + LS  +  L+ A+L  +    D++AE+LRLA+ +L 
Sbjct: 355 MERRLGEMGGGEP-ALVTRERQRHALSDALYELD-AALAIQTHDEDLMAEHLRLAARALD 412

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           ++ G VDVE +L+ +F  FCIGK
Sbjct: 413 QVVGRVDVEDVLESLFRTFCIGK 435


>gi|71083056|ref|YP_265775.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1062]
 gi|123647187|sp|Q4FNR7|MNME_PELUB RecName: Full=tRNA modification GTPase mnmE
 gi|71062169|gb|AAZ21172.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 443

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 186/445 (41%), Positives = 288/445 (64%), Gaps = 14/445 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGL 65
           TI+A+STG   S I+I+R+SG    +V + +     P  R A+LR    ++   ++D+G+
Sbjct: 2   TIYALSTGPGISGIAIVRVSGKDTKKVIKLLTNAALPETRVATLRKINKINTSELIDEGI 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP PES+TGED AEFH+HG  AV++ +   ++K+ N RLA+PGEF++ AF+NGKI+L
Sbjct: 62  ILWFPGPESYTGEDMAEFHIHGSKAVIDALHHSISKIKNCRLADPGEFTKLAFQNGKINL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           L+AES+ADLIS+ETE+QR+ +++ M+G+ +  +    +KL  I S +EA +DF +E+  +
Sbjct: 122 LKAESIADLISAETEIQRQQAIKIMNGKSADKFNNLREKLLKILSHVEAKIDFPDEDLPE 181

Query: 186 NF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   + K++ N+++    +I   +   K+GE IR G+KI I+G +NAGKSSL N L+ +D
Sbjct: 182 DILKNIKKISNEVIL---NIKKILDDQKVGERIREGFKIAIIGPTNAGKSSLLNHLSNRD 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIV++I GTTRDV+   L+++GY V +SDTAGIR++ + +EK+GIK    + +NADL L
Sbjct: 239 VAIVSEIAGTTRDVIETHLNIDGYPVVVSDTAGIRDSKNEIEKKGIKLALDKADNADLKL 298

Query: 304 LL---KEINSKKEISFPKNIDFIFIGTKSDL----YSTYTEEYDH-LISSFTGEGLEELI 355
           ++   K I+ K  +    + + I +  KSDL     ++  + Y+H LIS      LE+LI
Sbjct: 299 IVIDAKSIDFKGVLKELMDENAILVINKSDLLNKDLNSEIKNYEHVLISVKNNLNLEDLI 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
           +KIK+ L NKF      + +  RH  HL Q++  L+      +    D  AE+LRLA+  
Sbjct: 359 SKIKNKLKNKFITSEDILITRARHRQHLEQSLNCLKNFEEKNEAEDFDKAAEDLRLATRH 418

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG I G VDVE++L  IF+ FCIGK
Sbjct: 419 LGMIVGKVDVEEILGSIFNDFCIGK 443


>gi|114571503|ref|YP_758183.1| tRNA modification GTPase TrmE [Maricaulis maris MCS10]
 gi|122314956|sp|Q0AKE8|MNME_MARMM RecName: Full=tRNA modification GTPase mnmE
 gi|114341965|gb|ABI67245.1| tRNA modification GTPase trmE [Maricaulis maris MCS10]
          Length = 438

 Score =  316 bits (809), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 179/438 (40%), Positives = 257/438 (58%), Gaps = 7/438 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           T++A++T A  S +++IRLSG     + + +    +P PR A+LR      G ++D+GL+
Sbjct: 4   TVYALATPAGRSGVAVIRLSGGGAGGMLDALAGLPRPQPRMATLRALRDSGGSVMDRGLV 63

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP P SFTGEDSAEFHVHGG AV++ +L  L +      A  GEF+RRAFEN KIDL 
Sbjct: 64  LWFPGPGSFTGEDSAEFHVHGGPAVIDAVLSALDEA-GAHPAEAGEFTRRAFENEKIDLT 122

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           EAE LADLI +ETE QR  ++  MSG L  LY  W D L    + IE ++DF +E DV +
Sbjct: 123 EAEGLADLIDAETEGQRVQALSQMSGSLRRLYDGWRDALITAMASIEGEIDFPDEADVPD 182

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             S      +  L   +  H+  G+ GE IR G+ IV++G  NAGKSSL N LA++D AI
Sbjct: 183 ALSHAAYEPLSELIGSMFEHLDDGRRGERIRIGFSIVLIGAPNAGKSSLLNCLARRDAAI 242

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTDIPGTTRD++ + L L G+ V ISDTAG+RE  D +E EG++R     E+ADL + + 
Sbjct: 243 VTDIPGTTRDIVEVQLTLGGFPVVISDTAGLREAVDAIEAEGVRRALDRAEHADLRIGVA 302

Query: 307 EINSKKEI----SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           +  S +E+        + D + +  K DL      +  + +S+ +G+G+E L  +I+ I+
Sbjct: 303 DARSDEELVDLEGRLTDGDLLVL-NKLDLGLVSERDGAYRLSAKSGDGVEALEARIEQIV 361

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
            ++         S  RH   +   +  L        D   ++  E+ RLA  +L  +TG 
Sbjct: 362 RDRLSVREMPALSRVRHRRAVETALEALSRCRDQLADA-PELAGEDARLAVRALESLTGR 420

Query: 423 VDVEQLLDIIFSKFCIGK 440
           VDVE +LD +FS+FCIGK
Sbjct: 421 VDVEDILDRVFSQFCIGK 438


>gi|254456366|ref|ZP_05069795.1| tRNA modification GTPase TrmE [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083368|gb|EDZ60794.1| tRNA modification GTPase TrmE [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 443

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 190/452 (42%), Positives = 282/452 (62%), Gaps = 28/452 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGL 65
           TI+++S+G   S I+IIR+SGP    V + +  K  P PR A+LR    ++   ++D+G+
Sbjct: 2   TIYSLSSGPGISGIAIIRVSGPDTSNVLKLLTNKSLPKPRVATLRKINKINTSELIDEGI 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+ FP+PES+TGED AE  VHG  AV++ I   ++K+ N RLA PGEF++ AF+NGKI+L
Sbjct: 62  LLWFPAPESYTGEDMAEIQVHGSKAVIDAIHSSISKVENCRLAEPGEFTKLAFQNGKINL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           L+AES+ADLIS+ETE+QR+ +++ M+G+ +  +    +KL  I S +EA +DF  +ED+ 
Sbjct: 122 LKAESIADLISAETEIQRKQAIKIMNGKSADQFNFLREKLLKILSHVEAKIDFP-DEDLP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           N   KE+      +  +I   +   K+GE IR G+KI ILG +NAGKSSL N L+ +DVA
Sbjct: 181 NDILKEIKKSSDEVLINIKKILDDQKVGERIREGFKIAILGPTNAGKSSLLNHLSNRDVA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++I GTTRDV+   L+++GY V +SDTAGIR++ + +EK+GIK +    + ADL L++
Sbjct: 241 IVSEIAGTTRDVIETHLNIDGYPVIVSDTAGIRDSKNEIEKKGIKLSLNRADEADLKLVV 300

Query: 306 KEINSKKEISFPKNIDF------------IFIGTKSDLY----STYTEEYDH-LISSFTG 348
            ++         KN+DF            I +  KSDL         ++++H LIS    
Sbjct: 301 VDV---------KNLDFTDVLMGLLDQNSILVINKSDLLKGDIDPEIKKFNHILISIKEN 351

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
             ++ELI+KIK  L NKF      + + +RH  HL Q + +L   +   +    D  AE+
Sbjct: 352 LNIDELISKIKKNLKNKFITSDDILITRERHRQHLEQCLEHLNNFNKKNEVEDFDKAAED 411

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LRLA+  LG I G VDVE++L  IF+ FCIGK
Sbjct: 412 LRLATRHLGMIVGKVDVEEILGSIFNDFCIGK 443


>gi|163851007|ref|YP_001639050.1| tRNA modification GTPase TrmE [Methylobacterium extorquens PA1]
 gi|163662612|gb|ABY29979.1| tRNA modification GTPase TrmE [Methylobacterium extorquens PA1]
          Length = 444

 Score =  312 bits (799), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 167/442 (37%), Positives = 260/442 (58%), Gaps = 4/442 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59
           +    +TIFA ++G   +A++++R+SGP+     + +   + P PR+ SLR     + R 
Sbjct: 5   LPDRDDTIFAPASGFGRAAVTVVRISGPAAGLTLDRLAGGR-PEPRRLSLRCLRDPESRD 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ILD+ L+   P P + TGED AE H+HGG+AV + +L  L ++P  R A  G FSRRAF 
Sbjct: 64  ILDQALVAWLPGPATATGEDMAELHLHGGLAVRSAVLRALGRVPGCRPAEAGAFSRRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL EAE +ADLI +ETE QR  ++  + G L      W +    + +  EA LDF+
Sbjct: 124 NGRIDLTEAEGIADLIDAETEAQRVQALRQIDGALGRQVAAWRETGIDLLAGAEAALDFA 183

Query: 180 EEEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E DV        L+    FL++ I + ++ G+ GE +R G+ +V+ G  NAGKS+L NA
Sbjct: 184 DEGDVDEAGLDAALSGRAAFLRDAIRAALADGRRGERLREGFCVVLAGAPNAGKSTLLNA 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DIPGTTRD + +  DL G  V + DTAG+R+T D +E EG+KRT   +  
Sbjct: 244 LTGRDAAIVSDIPGTTRDAIEVRCDLGGLPVVLVDTAGLRDTADAIEAEGVKRTQSRIRG 303

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           ADL+L L   + + +     ++  + + TK+DL      E    IS+ TG GL+ L++ I
Sbjct: 304 ADLVLHLVPADGETDAGRFADVPLLLVRTKTDLAPEVPGEGGLAISAVTGAGLDALLDAI 363

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           ++       +   ++ + +RH   LS+   +L+  +        +++AE+LRLA  +LG+
Sbjct: 364 QAAAQTALGQ-GDALVTRERHREALSRAAAHLDRVATASAGFPPELVAEDLRLAVRALGE 422

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           + G V VE++LD +F+ FCIGK
Sbjct: 423 VGGHVGVEEMLDRLFAGFCIGK 444


>gi|154251725|ref|YP_001412549.1| tRNA modification GTPase TrmE [Parvibaculum lavamentivorans DS-1]
 gi|205415789|sp|A7HSK9|MNME_PARL1 RecName: Full=tRNA modification GTPase mnmE
 gi|154155675|gb|ABS62892.1| tRNA modification GTPase TrmE [Parvibaculum lavamentivorans DS-1]
          Length = 438

 Score =  311 bits (798), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 181/443 (40%), Positives = 266/443 (60%), Gaps = 14/443 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI-LDKG 64
           ETI+A+ST A  + I+++RLSGP        +  +K   PR+A L  F   +    LD+G
Sbjct: 2   ETIYALSTAAGRAGIAVLRLSGPHARAALRALTGRKAGAPREAMLCRFRDPETHAALDRG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L I FP+P SFTGED  E H+HGG AV+  +L  L ++P LR A PGEF+RRAFENGK+D
Sbjct: 62  LAIFFPAPASFTGEDVVELHIHGGRAVIAAMLRALGQLPGLRAAQPGEFTRRAFENGKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QR  ++  M G L  LY  W  +L    ++ EA++DF +EE  
Sbjct: 122 LTEVEGLADLIDAETEAQRAQALRQMEGALGQLYEAWRARLMRALAYAEAEIDFPDEEVP 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +  +K +  DI  L+ +I++H+  G+ GE +R+G ++ I+G  NAGKSSL N LA ++ 
Sbjct: 182 GDLIAK-LGPDIEALETEIAAHLDDGRRGEQLRDGVEVAIVGPPNAGKSSLLNRLAGREA 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+D  GTTRDVL + LD+ G  V ++DTAG+RE    +E+EG++R     E ADL ++
Sbjct: 241 AIVSDEAGTTRDVLEVRLDIGGVPVTLADTAGLREAAGAIEQEGVRRALARAEAADLRIV 300

Query: 305 L-----KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
           +       I +   ++ P ++  +    K DL +   +     IS+ TG+G++ L   + 
Sbjct: 301 MVAPGVSGIGNGFALARPDDLRVL---NKVDLGAEVPDGVIG-ISALTGQGIDALEAALA 356

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD--IIAENLRLASVSLG 417
           + + + ++     + +  RH   L+     L  A    K  G D  ++AE+LRLA+ +LG
Sbjct: 357 ARVGSAYEAREHPVITRARHREGLADCAASLARAEAALK-AGRDAELVAEDLRLAARALG 415

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           +ITG VDVE LLD+IF  FCIGK
Sbjct: 416 RITGRVDVEDLLDVIFRDFCIGK 438


>gi|301613774|ref|XP_002936375.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
           [Xenopus (Silurana) tropicalis]
          Length = 491

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 185/469 (39%), Positives = 278/469 (59%), Gaps = 35/469 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILD 62
           ++TIFA+S+G     +S+IR SGP+     + +   K+ P PR+ +L        G +LD
Sbjct: 25  RDTIFALSSGHGKCGVSVIRTSGPASGDALQLLTGWKQLPPPRRVTLTSLLCPTTGELLD 84

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +GL++ F  P+SFTGED  E+HVHGG AVV G+L+ L  +  LR A PGEF++RAF+NGK
Sbjct: 85  RGLVLWFSGPKSFTGEDCCEYHVHGGPAVVMGVLQALGTVQMLRPAEPGEFTKRAFQNGK 144

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL EAE L DLI +ETE+QRR ++  MSGEL  LY +W  +L    + +EA +DFSE++
Sbjct: 145 LDLTEAEGLGDLIHAETEIQRRQALRQMSGELGQLYQKWSHRLVTALAHVEAFIDFSEDD 204

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +V+      V +++  L+ ++  H+   + GE +R+G  +V+ G +NAGKSSL N  ++K
Sbjct: 205 NVEENVLTSVDSEVKNLQEELEDHLKDSRRGERLRDGLHLVLAGATNAGKSSLLNLTSQK 264

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             AIV+ IPGTTRDV+   L++ GY V +SDTAG+R+++D VEKEG++R    ++NAD++
Sbjct: 265 PAAIVSPIPGTTRDVVETVLNIGGYPVIMSDTAGLRDSEDPVEKEGVRRAKERLDNADIL 324

Query: 303 LLLKEINS------------KKEISFP----KNIDFIFIGTKSDL-----YSTYTE---- 337
           + + + +             K  +SFP    K  + + +  KSDL     ++   E    
Sbjct: 325 IAVVDASKVPITRISILAHLKSLLSFPSSEGKLREVLLVLNKSDLLDPPGHAKVQELCKD 384

Query: 338 ---EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS--HKRHLYHLSQTVRYLEM 392
                   +S  TG+G+ + I  +K  L           PS    RH  HL++ +  LE 
Sbjct: 385 PELPTACFLSCQTGQGVGDFIYILKQKLEKICGDPLHGAPSLTQTRHRLHLNKCLEALEQ 444

Query: 393 ASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++  E+D  L + AE LR++   LG ITG V VE +LDIIF  FCIGK
Sbjct: 445 YTIYREQD--LVLAAEELRISYRELGAITGRVGVEGILDIIFRDFCIGK 491


>gi|254504318|ref|ZP_05116469.1| putative GTPase [Labrenzia alexandrii DFL-11]
 gi|222440389|gb|EEE47068.1| putative GTPase [Labrenzia alexandrii DFL-11]
          Length = 405

 Score =  309 bits (791), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 166/394 (42%), Positives = 241/394 (61%), Gaps = 14/394 (3%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L++ F  P SFTGED  EF  HGG AVV  +L  L + PN R A PGEF+RRAF+
Sbjct: 13  IIDQALVLFFEGPASFTGEDVVEFQCHGGRAVVAAMLRILGEFPNCRPAEPGEFTRRAFD 72

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            G++DL E E LADLI++ETE QR+ ++  M G L SLY  W  +L H+R+ IEAD DF+
Sbjct: 73  RGRMDLTEVEGLADLIAAETESQRKQAVRQMGGALGSLYEDWRKRLIHMRAMIEADFDFA 132

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +EEDV    + EV  +   L+++++ H+ Q + GE +R+G ++V++G  NAGKSSL NA+
Sbjct: 133 DEEDVPGSVADEVWKEAATLQSEVTRHLEQSRSGERLRSGLQVVLMGAPNAGKSSLLNAI 192

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A +DVAIVT+  GTTRDV+ + LDL GY V + DTAG+RETD IVE+EGI+R       A
Sbjct: 193 AGRDVAIVTEEAGTTRDVIEVHLDLGGYPVTLVDTAGLRETDGIVEREGIRRAEERGRQA 252

Query: 300 DLILLLKEINS----KKEISFPKN----IDFIFIGTKSDLYSTYTEEYDHLI-----SSF 346
           DL+L   E         +   P++    +    + TK+DL +   ++   +      SS 
Sbjct: 253 DLVLWAVEPGGVEPDHPQAGLPEDVADRVPVWTVRTKADLETLPEQDSSGITEKIPASSK 312

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
           + EG++ L + +              + +  RH ++L+  +  L  A ++      ++ A
Sbjct: 313 SDEGMKGLFDALTRFAEETISVGEAPLATRARHRHYLNDCLSGLGQA-VSSDHLPTELRA 371

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+LR A+ SLG+ITG +DVE LLD+IF  FCIGK
Sbjct: 372 EDLRRAADSLGRITGRIDVEDLLDVIFRDFCIGK 405


>gi|221236808|ref|YP_002519245.1| tRNA modification GTPase TrmE [Caulobacter crescentus NA1000]
 gi|220965981|gb|ACL97337.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Caulobacter crescentus NA1000]
          Length = 456

 Score =  308 bits (790), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 176/452 (38%), Positives = 272/452 (60%), Gaps = 25/452 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T A  SA++++R+SGP   ++   +C +  P PR AS+R     +G  LD  L
Sbjct: 13  DTIFALATAAGRSAVAVVRVSGPRSSEIAAALCGRL-PSPRLASVRTL-KHNGVALDAAL 70

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P S+TGEDS EFHVHGG AVV  +L  L+++   RLA  GEF+RRAFENGK+DL
Sbjct: 71  VLRFEKPASYTGEDSVEFHVHGGRAVVEALLAALSEL-GARLAEAGEFTRRAFENGKLDL 129

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE +ADLI +ETE QRR ++  + G LS  Y +W D L    + +EA +DF +E D+ 
Sbjct: 130 AQAEGVADLIDAETEAQRRQALGQVGGALSQRYDRWRDLLVQALAMLEAAVDFPDE-DLP 188

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              ++     +  L  ++++ ++    G  +R+G++I ++G  NAGKS+L N LA++D A
Sbjct: 189 EEVAERARPGLRQLSAELNAALADVSRGRRVRDGFRIALIGAPNAGKSTLLNGLAERDAA 248

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTD+ GTTRDV+ + L L GY V ++DTAGIRET D++E EG++R     E ADL L +
Sbjct: 249 IVTDVAGTTRDVIEVPLVLGGYKVLVADTAGIRETADVIEAEGVRRAKAWAEAADLRLWV 308

Query: 306 KE-INSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTGEGL---------- 351
            +  + K+  + P+ I   D++ +  K+D+     +   H+   + GEGL          
Sbjct: 309 VDGFHVKQADARPEAIRVGDWLIL-NKTDIAD--ADASAHVAERWAGEGLTVLHIAGTSA 365

Query: 352 ---EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
              E L   + S +++      F   +  RH   LS+   YLE A L++    +++ AE+
Sbjct: 366 EGPEALRAALASHVADALSGAEFPAATRLRHAERLSEARSYLERA-LSDVGLEVELAAED 424

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +RLA+ +L +I+G +D E +L  +FS FCIGK
Sbjct: 425 VRLAARALERISGRIDPEDVLGRVFSTFCIGK 456


>gi|114799625|ref|YP_762235.1| tRNA modification GTPase TrmE [Hyphomonas neptunium ATCC 15444]
 gi|123027538|sp|Q0BWA8|MNME_HYPNA RecName: Full=tRNA modification GTPase mnmE
 gi|114739799|gb|ABI77924.1| tRNA modification GTPase TrmE [Hyphomonas neptunium ATCC 15444]
          Length = 441

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 167/440 (37%), Positives = 270/440 (61%), Gaps = 6/440 (1%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A+++G  PSAI+IIR+SGP+  ++ + +     P P++A+L Y +  DG ++D+G
Sbjct: 4   RDTICALASGPPPSAIAIIRISGPAVAEIGKSLLASGLPEPKRAALTYIYDSDGALIDQG 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + +   +P S+TGED+ E ++HGG AV++  L  L  +  +RLA PGEF+RRAFENGK+D
Sbjct: 64  IALYANAPHSYTGEDTLELYLHGGPAVIDHALRGLTAIAGVRLAEPGEFTRRAFENGKLD 123

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE +AD+I +ET  Q+  ++  + G L+ +Y  W ++LT   + IE  +DF +E DV
Sbjct: 124 LTEAEGVADIIEAETGAQKAQALRQLGGGLTEIYDGWREELTGTLALIEVMIDFPDEGDV 183

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +++ +L+ +  + ++I + +    +GE IR+G+++ I+G  NAGKSS+ N LA+++ 
Sbjct: 184 PEDTARPILSRLEKIMSEIETALGDRGVGERIRDGFRVAIVGPPNAGKSSILNRLARREA 243

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDV+ + L L G +V I+DTAG+RET+D+VE EG++R       ADL + 
Sbjct: 244 AIVTDIAGTTRDVVEVRLVLGGQVVWIADTAGLRETEDVVEAEGVRRARRAAAEADLRIH 303

Query: 305 LKEINSKKEISFPKNIDF--IFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSI 361
           +  I+       P+ ++   I +  K+D           L IS  TGEG+++L + I + 
Sbjct: 304 V--IDGTDPSPPPEQVETQDIIVFNKADQRPAILAPDGALPISVITGEGIDKLESWIAAF 361

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKIT 420
           +S +   +   + +  RH   L   +  L  A      D G ++  E++R+A   L  + 
Sbjct: 362 VSRRASSVEAPVITRARHREKLVAGLASLTAARDALVSDMGAELAGEDVRMALRQLSSVI 421

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G VDVE +L  +FSKFCIGK
Sbjct: 422 GRVDVEDVLGAVFSKFCIGK 441


>gi|16127986|ref|NP_422550.1| tRNA modification GTPase TrmE [Caulobacter crescentus CB15]
 gi|239977483|sp|P0CAX2|MNME_CAUCR RecName: Full=tRNA modification GTPase mnmE
 gi|239977563|sp|B8GW34|MNME_CAUCN RecName: Full=tRNA modification GTPase mnmE
 gi|13425532|gb|AAK25718.1| thiophene and furan oxidation protein ThdF [Caulobacter crescentus
           CB15]
          Length = 446

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 176/452 (38%), Positives = 272/452 (60%), Gaps = 25/452 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T A  SA++++R+SGP   ++   +C +  P PR AS+R     +G  LD  L
Sbjct: 3   DTIFALATAAGRSAVAVVRVSGPRSSEIAAALCGRL-PSPRLASVRTL-KHNGVALDAAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P S+TGEDS EFHVHGG AVV  +L  L+++   RLA  GEF+RRAFENGK+DL
Sbjct: 61  VLRFEKPASYTGEDSVEFHVHGGRAVVEALLAALSEL-GARLAEAGEFTRRAFENGKLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE +ADLI +ETE QRR ++  + G LS  Y +W D L    + +EA +DF +E D+ 
Sbjct: 120 AQAEGVADLIDAETEAQRRQALGQVGGALSQRYDRWRDLLVQALAMLEAAVDFPDE-DLP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              ++     +  L  ++++ ++    G  +R+G++I ++G  NAGKS+L N LA++D A
Sbjct: 179 EEVAERARPGLRQLSAELNAALADVSRGRRVRDGFRIALIGAPNAGKSTLLNGLAERDAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTD+ GTTRDV+ + L L GY V ++DTAGIRET D++E EG++R     E ADL L +
Sbjct: 239 IVTDVAGTTRDVIEVPLVLGGYKVLVADTAGIRETADVIEAEGVRRAKAWAEAADLRLWV 298

Query: 306 KE-INSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTGEGL---------- 351
            +  + K+  + P+ I   D++ +  K+D+     +   H+   + GEGL          
Sbjct: 299 VDGFHVKQADARPEAIRVGDWLIL-NKTDIAD--ADASAHVAERWAGEGLTVLHIAGTSA 355

Query: 352 ---EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
              E L   + S +++      F   +  RH   LS+   YLE A L++    +++ AE+
Sbjct: 356 EGPEALRAALASHVADALSGAEFPAATRLRHAERLSEARSYLERA-LSDVGLEVELAAED 414

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +RLA+ +L +I+G +D E +L  +FS FCIGK
Sbjct: 415 VRLAARALERISGRIDPEDVLGRVFSTFCIGK 446


>gi|332373472|gb|AEE61877.1| unknown [Dendroctonus ponderosae]
          Length = 501

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 189/488 (38%), Positives = 275/488 (56%), Gaps = 54/488 (11%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYF-FGLDG 58
           +     TIFA+S+G     +++IR+SGP     + +    K+ P PR   LR     +  
Sbjct: 20  LRQNSSTIFALSSGLGKCGVAVIRVSGPEAGTAISKLTTLKELPQPRTVVLRSIKHPISN 79

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++DKGL++  P P SFTGEDS+EFHVHGG+AV+NG+L+ LA MP  +LA PGEF+RRAF
Sbjct: 80  ELIDKGLILWLPGPRSFTGEDSSEFHVHGGVAVINGLLDALASMPKFKLAEPGEFTRRAF 139

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL E E LADL+ +ETE QR+ ++    G LS LY  W   L H  + +EA +DF
Sbjct: 140 SNGKLDLTEVEGLADLLQAETEAQRKQALLQADGSLSKLYENWRHVLKHSVANLEAHIDF 199

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E E +++     V+ +I  L  DI+ H+  G+ GEI+R G K VILG  N GKSSL N 
Sbjct: 200 EETETLEDGLVDNVVKNIEVLSADINKHMRDGRKGEILRRGVKAVILGEPNVGKSSLLNL 259

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVE 297
           L ++  +IVT I GTTRDV+ + L+++GY + +SDTAG+R ++ D++E EG+ R     +
Sbjct: 260 LCQRPASIVTPISGTTRDVIQVTLNIQGYPLVLSDTAGLRKDSQDVIELEGMSRAVDIYQ 319

Query: 298 NADLILL-------------------------LKEINSKKEISFPKNIDFIF------IG 326
            ADL++L                         +KE+     I+ PK+   +F      + 
Sbjct: 320 KADLVILVIDFQNYSNWCHRHAADFKTYILHYIKELGVSDLINDPKDGQTMFKKECVVVL 379

Query: 327 TKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKL---PFSIPSHKRH 379
            K+DL S    +  H     +S  T  G+ +L+    ++L+   K L   P         
Sbjct: 380 NKTDLDSKAVCDKIHKNIVKLSCKTEAGISDLV----TVLAQHLKILCGEPSQEHPSMNQ 435

Query: 380 LYHLSQTVR-------YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432
           + H  Q ++       +LE AS N+ D  L I+AE+LR A  SLGK+ G V  E++LD+I
Sbjct: 436 VRHREQLLKCQKHLQSFLEDASKNKPD--LVIMAEHLRKALTSLGKLIGTVTSEEILDLI 493

Query: 433 FSKFCIGK 440
           F +FCIGK
Sbjct: 494 FREFCIGK 501


>gi|83953076|ref|ZP_00961798.1| tRNA modification GTPase [Sulfitobacter sp. NAS-14.1]
 gi|83842044|gb|EAP81212.1| tRNA modification GTPase [Sulfitobacter sp. NAS-14.1]
          Length = 428

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 177/437 (40%), Positives = 253/437 (57%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA +T    + + +IR+SGP  F + E I +   P PR A++R     DG+++D+ L
Sbjct: 2   DTIFAQATAQGRAGVCVIRISGPQAFFIAETIAQPL-PAPRMAAVRAISDADGQVIDRAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F SP SFTGED+ E H+HG IAVV  +L  L+     RLA PGEF+RRA ENGK+DL
Sbjct: 61  VLTFESPNSFTGEDTVELHLHGSIAVVRAVLALLSGFDGTRLAEPGEFTRRAMENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E L DLI +ETE QR+ ++  +SG L      W +KL    + +E  +DF+ +EDV 
Sbjct: 121 TQVEGLGDLIEAETEAQRKQALRVLSGHLGQKVDIWREKLIRAAALLEVTIDFA-DEDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV   +  +  DI + I+     E IR G+++ I+G  NAGKS+L NALA +D A
Sbjct: 180 VDVSPEVTELLNAVNIDILAEIAGTHTAERIRTGFEVAIIGRPNAGKSTLLNALAGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + + GTTRDV+ + +DL G  V + DTAG+RE  D VE  GI R     E ADL + L
Sbjct: 240 ITSAVAGTTRDVIEVRMDLGGLPVTLLDTAGLREGADEVEAIGIDRAKTRGEQADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E    +E+      D I +  K DL  +     D  IS  TG+G+ +LI +I++IL   
Sbjct: 300 SE--EGEELPVAATADDIVLRPKGDLRDS----ADDAISGVTGQGVPQLIERIQTILGA- 352

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            + L   + +H+RH   L ++   L   M  L+      DI +E LR +  +L  + G +
Sbjct: 353 -RSLNAGLATHERHRVALQKSAEGLAAAMLVLDHGPDQYDIASEELRHSIRALEALVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LLD+IFS FC+GK
Sbjct: 412 DVENLLDVIFSSFCLGK 428


>gi|195999388|ref|XP_002109562.1| hypothetical protein TRIADDRAFT_53723 [Trichoplax adhaerens]
 gi|190587686|gb|EDV27728.1| hypothetical protein TRIADDRAFT_53723 [Trichoplax adhaerens]
          Length = 494

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 191/482 (39%), Positives = 275/482 (57%), Gaps = 51/482 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-GRILD 62
           + T+FAVS+G   S +++IR++GP   +  + + K    P PR ASLR  +    G ++D
Sbjct: 18  RSTVFAVSSGHGVSGVAVIRVTGPETSEAVKLMTKSDNLPKPRYASLRKIYQPSTGDLVD 77

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           KGL++ FP P SFTGED AEF VHGG AVV GIL  L+++  L  A  G+F+RRAFEN K
Sbjct: 78  KGLILWFPGPNSFTGEDLAEFQVHGGSAVVEGILTSLSEIDGLYPAMAGDFTRRAFENEK 137

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL E E LADLI ++TE QR+ ++  M G LS LY  W   L    + IEA +DFSE+ 
Sbjct: 138 LDLTEVEGLADLIHAQTEAQRKQALRQMDGHLSQLYKIWSKTLLKSVADIEATIDFSEDV 197

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +++     V N +  L  ++ +H+  G+ GE +R+G  +VI G  N GKSSL N L ++
Sbjct: 198 -IEDGILTNVKNSVNKLAKEVRNHLEDGRRGEKLRSGVNVVIAGPPNVGKSSLLNLLCQR 256

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             AIV+ + GTTRDV+   +++ GY V  SDTAGIR++ D VEKEGIKR   ++  AD +
Sbjct: 257 PAAIVSPLEGTTRDVVETAVNIGGYPVLFSDTAGIRQSIDPVEKEGIKRAKSKISAADFV 316

Query: 303 LLLKEINSKKEI-----------------------SFPKNIDFIFIGTKSDLYST----- 334
           L++ +++  K +                        F +NI+++ I  K+DL +      
Sbjct: 317 LIVHDLSKYKHVDIDGLLESPLRMLNTNVDESTSADFDENIEYLMILNKADLITNNLAVQ 376

Query: 335 YTEEYDH------LISSFTGEGLEELINKIKSILSNKFKKL----PFSIPS--HKRHLYH 382
             E ++       +IS  TG+G+E+ IN    ILS K K +        PS    RH +H
Sbjct: 377 MKEAFNTKGVNACIISCETGDGIEDFIN----ILSQKMKDICGDPVVGNPSITQARHRFH 432

Query: 383 LSQTVR----YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
           L + +     YL MA    +D  L + AE LR+A   LG+ITG +  E +LD+IF  FCI
Sbjct: 433 LREALNSLEIYLRMAHDGFEDHDLVLGAEELRIALRELGRITGNIGTEDILDVIFRDFCI 492

Query: 439 GK 440
           GK
Sbjct: 493 GK 494


>gi|146337363|ref|YP_001202411.1| tRNA modification GTPase TrmE [Bradyrhizobium sp. ORS278]
 gi|205829156|sp|A4YJT5|MNME_BRASO RecName: Full=tRNA modification GTPase mnmE
 gi|146190169|emb|CAL74161.1| putative tRNA modification GTPase (trmE) [Bradyrhizobium sp.
           ORS278]
          Length = 444

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 176/447 (39%), Positives = 261/447 (58%), Gaps = 10/447 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA+S+G LPSAI+I+RLSGP      + +  K  P PR  +        G  
Sbjct: 1   MHPHDQTIFALSSGRLPSAIAIVRLSGPHAGAALQMLAGKM-PAPRLVTRALLRDPQGEP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ FP+P S TGE+  E H+HG  AV+  +   L++ P LR A PGEF+RRAFEN
Sbjct: 60  IDDAVVLWFPAPASATGENVVELHIHGSRAVIATLFGVLSETPELRPAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++T+ QRR ++  + G L     +W +++    + IEA +DFS+
Sbjct: 120 GKLDLTEAEGLDDLIHADTDRQRRQALRQLKGLLGDKVRRWREQIIEAAALIEAGIDFSD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV        L+ +  L  +I + ++     E +R+G  +VI G  NAGKS+L N LA
Sbjct: 180 EGDVPAELLAPALSRVQQLLLEIEAVLAAQGRAERLRDGLTVVIAGPPNAGKSTLMNQLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRD++ + LDL+GY V + DTAGIRETDD VE+EG++R      +AD
Sbjct: 240 RREVAIVSPQAGTTRDLIEVQLDLDGYPVTVIDTAGIRETDDPVEQEGVRRARDRAAHAD 299

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEE 353
           L+L L E +   E+          + TK+DL                  IS+ +G G+  
Sbjct: 300 LVLWLSE-HDGAEVERQGETPLWLVRTKTDLDGAERATRPDTKASRTFGISARSGAGMGA 358

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L++ +     N F      + + +R    L QT   L+  SL+  D G +++AE LR+A+
Sbjct: 359 LLDALVGFARNFFGSTESGLITRERQRQSLRQTADALQR-SLDTVDLGEELVAEELRIAA 417

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++LG++ G VDVE LLD+IF +FCIGK
Sbjct: 418 LALGRLLGRVDVEDLLDVIFREFCIGK 444


>gi|209883526|ref|YP_002287383.1| tRNA modification GTPase TrmE [Oligotropha carboxidovorans OM5]
 gi|209871722|gb|ACI91518.1| tRNA modification GTPase TrmE [Oligotropha carboxidovorans OM5]
          Length = 442

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 175/445 (39%), Positives = 259/445 (58%), Gaps = 8/445 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M  +  TI+A+++G  P+AI+I+R+SGP   QV E +C +  P PR A+L          
Sbjct: 1   MPLQPPTIYALASGRPPAAIAIVRVSGPQVPQVLERLCGRL-PQPRTATLVTLTSPGTGP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ + + FP+P S TGED AEF +HGG AV+  +   L K+  LR A PGEF+RRAFEN
Sbjct: 60  IDQAVALWFPAPHSATGEDVAEFQLHGGRAVIAALFAALEKIDGLRPAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++T+ QRR ++  + G L      W  ++    + IEA +DFS+
Sbjct: 120 GKLDLTEAEGLDDLIHADTDRQRRQALRHLQGLLGHRAESWRAQIIEAMALIEAGIDFSD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV        L  +  L+ +I   ++     E +R G ++ I G  NAGKS+L N LA
Sbjct: 180 EGDVSTELMAPALARVASLRTEIEETLAASAQSERLREGLQVAIAGPPNAGKSTLLNRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIV+   GTTRD++ + LDL+GY V + DTAG+R+  D VE+EG++R     E AD
Sbjct: 240 RREAAIVSPHAGTTRDIIEVHLDLDGYPVTLIDTAGLRDASDPVEQEGVRRARARAEAAD 299

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEGLEELI 355
           L+L L E  S         +    +  K DL      ST   +    IS+ TGEG+++L+
Sbjct: 300 LVLWLDEAESNA-TPLAGEVPLWRVRNKIDLAGKVGASTGGSDPAFAISAVTGEGVDQLV 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
             +    S+ F     ++ S  RH   L++TV  L+ A  +    G +I+AE LR+A  +
Sbjct: 359 AALVGFASDYFGGGEAALVSRARHRVLLTETVAALKRAE-DRAGQGDEIVAEELRIAIHA 417

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           +G++ G VDVE++LD IF +FCIGK
Sbjct: 418 VGRLLGRVDVEEILDSIFREFCIGK 442


>gi|66472790|ref|NP_001018605.1| tRNA modification GTPase GTPBP3, mitochondrial precursor [Danio
           rerio]
 gi|82192604|sp|Q501Z5|GTPB3_DANRE RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial;
           AltName: Full=GTP-binding protein 3; Flags: Precursor
 gi|63100959|gb|AAH95801.1| GTP binding protein 3 [Danio rerio]
          Length = 500

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 187/471 (39%), Positives = 277/471 (58%), Gaps = 41/471 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKG 64
           +TI+++S+G     ++++R+SGP+       +  +  P PR ASLR       + +LD+G
Sbjct: 35  DTIYSLSSGQGKCGVAVVRVSGPASALAVRRL-TRSLPAPRTASLRSISHPQSKELLDRG 93

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGEDSAEFH+HGG AV++G+L+ L  +P LR A  GEF+RRAF  GK+D
Sbjct: 94  LVLWFPGPASFTGEDSAEFHIHGGPAVISGVLQALGSLPGLRPAEAGEFTRRAFYAGKLD 153

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E L+DLI +ETE QRR ++  M+G+L  +Y  W D+L    + +EA +DFSE+E +
Sbjct: 154 LTEVEGLSDLIHAETEAQRRQALRQMAGDLGRIYQDWTDQLKRCLAHVEAFIDFSEDELI 213

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           ++    +V   +  L+ D+ +H+S  + GE +R+G  +VI G +NAGKSSL N L ++  
Sbjct: 214 EDGVLNDVDRAVQQLQTDMENHLSDERRGERLRSGVHVVIAGSTNAGKSSLLNLLTQRPA 273

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+   GTTRDVL + LD+ GY V +SDTAG+R+T D VE+EG++R    VE ADL L+
Sbjct: 274 AIVSPTAGTTRDVLEVPLDIGGYPVLLSDTAGLRDTSDSVEQEGVRRARQRVEQADLSLV 333

Query: 305 ---LKEINSKKEISFP-------KNI--------DFIFIGTKSDLYSTYTEEYDH----- 341
              L ++ S++    P       KNI          I I  +SDL S   +         
Sbjct: 334 VVDLTQLPSERR-HVPVFLRGHLKNILERSSQQQQHILILNESDLVSAEQQRSIQTSLQE 392

Query: 342 --------LISSFTGEGLEELI----NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                    +S  + +GLEEL+    N +K++  +     P    +  RH  HL +++  
Sbjct: 393 LSGAPSACFLSCHSRDGLEELLTLLHNTLKTLCGDPLIGSP--TLTQTRHRTHLQKSIEA 450

Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L+      +D  L + AE LRL  +SLG+ITG V  E++LD+IF  FCIGK
Sbjct: 451 LQQYH-EYRDVDLALAAEGLRLGLLSLGRITGRVSPEEILDVIFRDFCIGK 500


>gi|288956852|ref|YP_003447193.1| tRNA modification GTPase [Azospirillum sp. B510]
 gi|288909160|dbj|BAI70649.1| tRNA modification GTPase [Azospirillum sp. B510]
          Length = 443

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 188/447 (42%), Positives = 268/447 (59%), Gaps = 21/447 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-LDGRILDKGL 65
           TI+A++T    S ++++R+SGP        +  +  P PR+A L       DG  LD  L
Sbjct: 5   TIYALATAPGRSGVAVVRISGPEAGSALAALTGRPLPLPRRAVLATLRDPRDGDALDDAL 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +P SFTGED  E H+HGG AVV G++E LA +P LRLA PGEF+RRAFENGK+DL
Sbjct: 65  VLRFTAPASFTGEDVVELHLHGGRAVVTGVVEALATLPGLRLAEPGEFTRRAFENGKLDL 124

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE++ADLI +ET  QRR ++  M G L  LY  W ++LT   + IEAD+DF+ EED+ 
Sbjct: 125 TEAEAVADLIDAETTAQRRQALRQMEGALGRLYDGWRERLTRALAHIEADIDFA-EEDLP 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              ++ V   +  L  +I++H+  G  GE +R G  I I+G  NAGKSSL NALA++D A
Sbjct: 184 GGVAEAVRPVLAGLAGEIAAHLDDGGRGERLREGLHIAIVGAPNAGKSSLLNALARRDAA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILL 304
           IV+   GTTRD++ + LDL GY V ++DTAG+R    D VE+EGI+R       AD+ + 
Sbjct: 244 IVSARAGTTRDIIEVHLDLGGYPVVLADTAGLREAAADEVEEEGIRRARDRAARADVKIA 303

Query: 305 LKEINSKKEISFPKNIDFI-----FIGTKSDLYSTYTEEYDH---LISSFTGEGLEELIN 356
           + +  +  ++  P  +D I      +  K+DL +      D    L+S+ TG GL+ L  
Sbjct: 304 VFDATTLPDLD-PATLDLIDGDTVVVFNKTDLAAAGDLRPDLSPILLSAHTGAGLKRLEE 362

Query: 357 KIKSILSNKFKKLPFSIPS--HKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAENLRLAS 413
            +++  +++      S PS    RH   L++    L  A     D  L ++ AE++RLAS
Sbjct: 363 TLRAFSADRLAI--GSAPSLTRARHRAALTECRESLSRA----LDAPLPELAAEDVRLAS 416

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LG+ITG VDVE LLD+IF  FCIGK
Sbjct: 417 RALGRITGRVDVEDLLDVIFRDFCIGK 443


>gi|91762518|ref|ZP_01264483.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718320|gb|EAS84970.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 443

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 191/456 (41%), Positives = 287/456 (62%), Gaps = 36/456 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGL 65
           TI+A+STG   S I+I+R+SG    ++ + +   + P PR A+LR    ++   ++D+G+
Sbjct: 2   TIYALSTGPGISGIAIVRVSGEDTKKIIKLLTNAELPKPRVATLRKINKINTSELIDEGI 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP PES+TGED AEFH+HG  AV++ +   ++K+ N RLA+PGEF++ AF+NGKI+L
Sbjct: 62  ILWFPGPESYTGEDMAEFHIHGSKAVIDALHHSISKIENCRLADPGEFTKLAFQNGKINL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           L+AES+ADLIS+ETE+QR+ +++ M+G  +  + +  +KL  I S +EA +DF +E+   
Sbjct: 122 LKAESIADLISAETEIQRQQAIKIMNGNSADKFNELREKLLKILSHVEAKIDFPDED--- 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              S+++L +I  + N++  +I +     K+GE IR G+KI I+G +NAGKSSL N L+ 
Sbjct: 179 --LSEDILKNIKKISNEVILNIKKILDDQKVGERIREGFKIAIIGPTNAGKSSLLNHLSN 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIV++I GTTRDV+ I L+++GY V +SDTAGIR++ + +EK+GIK    + ENADL
Sbjct: 237 RDAAIVSEIAGTTRDVIEIHLNIDGYPVVVSDTAGIRDSKNEIEKKGIKLALDKAENADL 296

Query: 302 ILLLKEINSKKEISFPKNIDF------------IFIGTKSDLYST----YTEEYDH-LIS 344
            L++ +          KNIDF            I +  KSDL         + Y+H LIS
Sbjct: 297 KLIVID---------AKNIDFKGVLKELMDESAILVVNKSDLLKEDLNFEIKNYEHVLIS 347

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
                 +E LI KIK+ L NKF      + +  RH  HL Q++ YL+      +    D 
Sbjct: 348 VKNNLNVEGLILKIKNKLKNKFITNEDILITRARHRQHLEQSLNYLKNFEEKNEAEDFDK 407

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA+  LG I G VDVE++L  IF+ FCIGK
Sbjct: 408 AAEDLRLATRHLGMIVGKVDVEEILGSIFNDFCIGK 443


>gi|254560700|ref|YP_003067795.1| tRNA modification GTPase trmE [Methylobacterium extorquens DM4]
 gi|254267978|emb|CAX23846.1| tRNA modification GTPase trmE [Methylobacterium extorquens DM4]
          Length = 444

 Score =  305 bits (781), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 171/442 (38%), Positives = 260/442 (58%), Gaps = 4/442 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59
           +    +TIFA ++G   +A++++R+SGP+     + +   + P PR+ SLR     D R 
Sbjct: 5   LPDRDDTIFAPASGFGRAAVTVVRISGPAAGLALDRLAGGR-PEPRRLSLRRLRDPDSRD 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ILD+ L+   P P + TGED AE H+HGG+AV + +L  LA +P  R A  G FSRRAF 
Sbjct: 64  ILDQALVAWLPGPATATGEDMAELHLHGGLAVRSAVLRALAGVPGCRPAEAGAFSRRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL EAE +ADLI +ETE QR  ++  + G L      W +    + +  EA LDF+
Sbjct: 124 NGRIDLTEAEGIADLIDAETEAQRVQALRQLDGALGRQVAAWRETGIDLLAGAEAALDFA 183

Query: 180 EEEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E DV        L+     L++ I + ++ G+ GE +R G+ +V+ G  NAGKS+L NA
Sbjct: 184 DEGDVDEDGLDAALSGRATALRDAIRAALADGRRGERLREGFCVVLAGAPNAGKSTLLNA 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L+ +D AIV+DIPGTTRD + +  DL G  V + DTAG+RET D +E EG+KRT   + +
Sbjct: 244 LSGRDAAIVSDIPGTTRDAIEVRCDLGGLPVVLVDTAGLRETADAIEAEGVKRTQSRIRS 303

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           ADL+L L     K +     +I  + + TK+DL      E    IS+ TG GL+ L++ I
Sbjct: 304 ADLVLHLVPAGGKADAELFTDISILLVRTKTDLAPEVPGEGGLAISAVTGAGLDALLDAI 363

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           ++       +   ++ + +RH   LS+   +L+  +        +++AE+LRLA  +LG+
Sbjct: 364 QAAAQTALGQ-GDALVTRERHREALSRAAAHLDRVATASAGFPPELVAEDLRLAVRALGE 422

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           + G V VE++LD +F+ FCIGK
Sbjct: 423 VGGHVGVEEMLDRLFAGFCIGK 444


>gi|240138138|ref|YP_002962610.1| tRNA modification GTPase trmE [Methylobacterium extorquens AM1]
 gi|240008107|gb|ACS39333.1| tRNA modification GTPase trmE [Methylobacterium extorquens AM1]
          Length = 444

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 168/442 (38%), Positives = 263/442 (59%), Gaps = 4/442 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59
           +    +TIFA ++G   +A++++R+SGP+     + +  ++ P PR+ SLR     D R 
Sbjct: 5   LPDRDDTIFAPASGFGRAAVTVVRISGPAAGLALDRLAGRR-PEPRRLSLRRLRDPDSRD 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ L+   P P + TGED AE H+HGG+AV + +L  L ++P  R A  G FSRRAF 
Sbjct: 64  LLDQALVAWLPGPATATGEDMAELHLHGGLAVRSAVLRALGRVPGCRPAEAGAFSRRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL EAE +ADLI +ETE QR  ++  + G L      W +    + +  EA LDF+
Sbjct: 124 NGRIDLTEAEGIADLIDAETEAQRVQALRQLDGALGRQVAAWRETGIDLLAGAEAALDFA 183

Query: 180 EEEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E DV        L+     L++ I + ++ G+ GE +R G+ +V++G  NAGKS+L NA
Sbjct: 184 DEGDVDEDGLDAALSGRATALRDAIRAALADGRRGERLREGFCVVLVGAPNAGKSTLLNA 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L+ +D AIV+DIPGTTRD + +  DL G  V + DTAG+RET D +E EG+KRT   + +
Sbjct: 244 LSGRDAAIVSDIPGTTRDTIEVRCDLGGLPVVLVDTAGLRETADAIEAEGVKRTQSRIRS 303

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           ADL+L L   + K +     ++  + + TK+DL      E    IS+ TG GL+ L++ I
Sbjct: 304 ADLVLHLVPADGKADAGRFADVPVLLVRTKTDLAPEVPGEGGLAISAVTGAGLDALLDAI 363

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           ++       +   ++ + +RH   LS+   +L+  +        +++AE+LRLA  +LG+
Sbjct: 364 QAAAQTALGQ-GDALVTRERHREALSRAAAHLDRVATAAAGFPPELVAEDLRLAVRALGE 422

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           + G V VE++LD +F+ FCIGK
Sbjct: 423 VGGHVGVEEMLDRLFAGFCIGK 444


>gi|83942027|ref|ZP_00954489.1| tRNA modification GTPase [Sulfitobacter sp. EE-36]
 gi|83847847|gb|EAP85722.1| tRNA modification GTPase [Sulfitobacter sp. EE-36]
          Length = 428

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 174/437 (39%), Positives = 254/437 (58%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA +T    + + +IR+SGP  F + E I +   P PR A++R     DG+++D+ L
Sbjct: 2   DTIFAQATAQGRAGVCVIRISGPQAFFIAETIAQPL-PAPRVAAVRAISDADGQVIDRAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED+ E H+HG IAVV  +L  L+     RL+ PGEF+RRA ENGK+DL
Sbjct: 61  VLTFEGPNSFTGEDTVELHLHGSIAVVRAVLALLSGFDGTRLSEPGEFTRRAMENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E L DLI +ETE QR+ ++  +SG L      W +KL    + +E  +DF+ +EDV 
Sbjct: 121 TQVEGLGDLIEAETEAQRKQALRVLSGHLGQKVDIWREKLIRAAALLEVTIDFA-DEDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV   +  +  DI + I+     E IR G+++ I+G  NAGKS+L NALA +D A
Sbjct: 180 VDVSPEVTELLNAVNADILAEIAGTHTAERIRTGFEVAIIGRPNAGKSTLLNALAGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + + GTTRDV+ + +DL G  V + DTAG+RE  D VE  GI R     E ADL + L
Sbjct: 240 ITSAVAGTTRDVIEVRMDLGGLPVTLLDTAGLREGADEVEAIGIDRAKTRGEQADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E    +++      D I +  K+DL  +     D+ IS  TG+G+ +LI +I++IL   
Sbjct: 300 SE--EGEDLPVAATADDIVLRPKADLRDS----ADNAISGVTGQGVPQLIERIQAILGA- 352

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            + L   + +H+RH   L ++   L   M  L+      DI +E LR +  +L  + G +
Sbjct: 353 -RSLNAGLATHERHRVALQKSAEGLAAAMLVLDHGPDQYDIASEELRHSIRALEALVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LLD+IFS FC+GK
Sbjct: 412 DVENLLDVIFSSFCLGK 428


>gi|217978725|ref|YP_002362872.1| tRNA modification GTPase TrmE [Methylocella silvestris BL2]
 gi|217504101|gb|ACK51510.1| tRNA modification GTPase TrmE [Methylocella silvestris BL2]
          Length = 448

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 170/442 (38%), Positives = 257/442 (58%), Gaps = 5/442 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-LDGR 59
           +    +TIFAV++GA  +A++I+RL+GP+   + + +  +  P PR A+L  F     G 
Sbjct: 10  IGRSGDTIFAVASGAGRAAVAILRLTGPASGAIVKAVAGRLPP-PRVATLATFRDPATGE 68

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+GL+I F  P S+TGEDSAEFH+HGG AVV G++  +      R A  GEFSRRA  
Sbjct: 69  AIDQGLVIFFQGPRSYTGEDSAEFHIHGGRAVVAGLIAAIGSFEGARAAEAGEFSRRALM 128

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL + E + DL+++ET  QRR ++   +G L    G W   L    + I AD+DFS
Sbjct: 129 NGKLDLGQIEGIGDLVAAETASQRRQALRQTAGMLGRRAGGWRAALIEASARIAADIDFS 188

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +E DV    + ++   I  +  ++   +   + GE IR G  IVI G  NAGKS+L NAL
Sbjct: 189 DEGDVAAAPALDIAPIIAPVLAELRGELHAARAGERIREGLTIVIAGPPNAGKSTLLNAL 248

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A++DVAIV+   GTTRDVL ++LDL GY   + DTAG+RET D VE+ G+ R     +NA
Sbjct: 249 ARRDVAIVSKHAGTTRDVLEVELDLGGYAAVLIDTAGLRETTDPVEQIGVSRALERAQNA 308

Query: 300 DLILLLKEINS-KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           DL+L L E+   +   +   + +   + TK+DL  +   E    IS+ +G  L+ L++++
Sbjct: 309 DLVLWLSELGDFQAPDARLTDAELWQVATKADLAPSAQAEAALCISAASGLNLDVLLDRL 368

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
               +         + + +RH   +++    L  A +      ++I+AE+LR A  +L +
Sbjct: 369 AQFAAEAGGAGHDGVITRERHRKSIAEAESAL--ARILSDSAPVEIVAEDLRAALFALER 426

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           + G VDVE +L  IFS+FCIGK
Sbjct: 427 LVGRVDVEDILGDIFSRFCIGK 448


>gi|315497189|ref|YP_004085993.1| tRNA modification gtpase trme [Asticcacaulis excentricus CB 48]
 gi|315415201|gb|ADU11842.1| tRNA modification GTPase TrmE [Asticcacaulis excentricus CB 48]
          Length = 446

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 183/455 (40%), Positives = 271/455 (59%), Gaps = 24/455 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M H K+TIFA+++    + +S+IR+SGP   QV E +  +  P PR A+L +    DG +
Sbjct: 1   MFHVKQTIFALASAQGRAGVSVIRISGPQAAQVVEALLGRL-PRPRYATLGHLR-YDGEL 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVN---GILEELAKMPNLRLANPGEFSRRA 117
           +D+ L++ F  P SFTGED AEFH+HG  AV+    G+   L     LR A PGEFSRRA
Sbjct: 59  IDQALVLWFKGPSSFTGEDCAEFHIHGSRAVLERLYGVFRAL----GLRHAEPGEFSRRA 114

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           FENGK+DL +AE+++DL+ +E+E QRR ++  + G     Y QW D L  I + IEA +D
Sbjct: 115 FENGKLDLTQAEAISDLVEAESEAQRRQALMQLEGGFRDRYAQWRDALIRILAHIEAIVD 174

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F +E D+    S+ ++ DI+ LK ++ + IS  + G+ IR GY+I I+G  NAGKSSLFN
Sbjct: 175 FPDE-DIPEHLSERIVADIITLKTEVGAAISDARRGQQIREGYRIAIMGKPNAGKSSLFN 233

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL + D AIVT I GTTRDV+   + +  Y   I DTAG+RET+D+VE EGI+R     +
Sbjct: 234 ALLQTDAAIVTPIAGTTRDVIESPIRIGPYAALIYDTAGLRETEDVVESEGIRRAKARGQ 293

Query: 298 NADL-ILLLKEINSKKEISFPKNIDFIFIGTKSD---------LYSTYTEEYDHLI-SSF 346
           +ADL + +L   ++ +++S  ++ D++ +  KSD         L S Y ++   L  +S 
Sbjct: 294 SADLRLWVLDASDAPEDLSAMQSGDYLIL-NKSDQVSSQALAALRSQYEDKKVRLFETSL 352

Query: 347 T-GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
           T GEG++ +   ++  L        F   + +RH   L +    L+ A L       +++
Sbjct: 353 TKGEGIDAVRRALEVDLEAALSLSTFPAATRERHSERLREVDAALDRA-LGIGFATPELM 411

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE++R A  +   + G  DVEQ+LD IFS FCIGK
Sbjct: 412 AEDIRQALSAFDALFGRTDVEQVLDHIFSSFCIGK 446


>gi|170739706|ref|YP_001768361.1| tRNA modification GTPase TrmE [Methylobacterium sp. 4-46]
 gi|205415797|sp|B0UJI9|MNME_METS4 RecName: Full=tRNA modification GTPase mnmE
 gi|168193980|gb|ACA15927.1| tRNA modification GTPase TrmE [Methylobacterium sp. 4-46]
          Length = 437

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 172/440 (39%), Positives = 257/440 (58%), Gaps = 10/440 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64
           +TIFA ++G   +A+++IR+SGP        +     P PR+ SLR       G +LD+ 
Sbjct: 3   DTIFAPASGFGRAAVAVIRISGPGAASCLTALTGHPPPLPRRLSLRQLRDPGTGEVLDRA 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++  P P +FTGEDSAE H+HGG AV   +L  L ++P L  A PG F+RRAF NG++D
Sbjct: 63  LVVWLPGPATFTGEDSAELHLHGGAAVRAAVLRVLGRLPGLAPAEPGAFTRRAFLNGRMD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L   E LADLI +ETE QRR +M  + G L  L   W D L  + +  EA LDFS+E DV
Sbjct: 123 LTAVEGLADLIDAETEAQRRQAMRQLDGALGRLVEAWRDTLLGVLAGAEAALDFSDEGDV 182

Query: 185 -QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
            ++  S   L     +++ I + +++G+ GE +R G+ +V+ G  NAGKS+L NALA+++
Sbjct: 183 DESALSASGLAAAARVRDAILAALAEGRRGERLREGFVVVLAGPPNAGKSTLLNALARRE 242

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLI 302
            AIV+ IPGTTRD + +  DL+G  V + DTAG+R E  D +E EG+ R+   +E ADL+
Sbjct: 243 AAIVSPIPGTTRDAIEVRCDLDGLPVLLVDTAGLRDEGADPIEAEGMARSRRRIEEADLV 302

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH--LISSFTGEGLEELINKIKS 360
           L L  +  +   + PK    + + TK DL        D    IS+ TGEGL  L++++ +
Sbjct: 303 LWL--VPPEGGAAAPKGA--LVVHTKRDLGRDPGGGVDGALAISALTGEGLAMLLDRVAA 358

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
                  +   ++ + +R    L +   +L  A    +    +++AE+LRLA  +LG + 
Sbjct: 359 AAGAALGRG-DAVVTRERQRRALEECAAHLGRAIAGAETMPAELVAEDLRLAVRALGAVA 417

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G V VE++LD +FS FCIGK
Sbjct: 418 GRVGVEEMLDRLFSSFCIGK 437


>gi|296445001|ref|ZP_06886962.1| tRNA modification GTPase TrmE [Methylosinus trichosporium OB3b]
 gi|296257422|gb|EFH04488.1| tRNA modification GTPase TrmE [Methylosinus trichosporium OB3b]
          Length = 435

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 176/439 (40%), Positives = 263/439 (59%), Gaps = 11/439 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-LRYFFGLDGRILDKG 64
           +TIFA+++GA  +AI++IRLSGP    + E +     P PR A  +R      G  +D+G
Sbjct: 4   DTIFALASGAGRAAIAVIRLSGPLVSPLVEAVAGLT-PTPRFAHYVRLRDPRSGETIDRG 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LL+ FP   S TGED AE  +HGG AV++G L   ++ P LRLA PGEF+RR+F NG++D
Sbjct: 63  LLLFFPVESSPTGEDYAELQIHGGRAVIDGFLTLFSETPGLRLAEPGEFARRSFANGRMD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L + E LADLI +ET  QRR +++ + G L      W + +    + +EA+LDFS+E DV
Sbjct: 123 LSQVEGLADLIDAETASQRRQALQALGGGLRRRVEGWREAVICGAALVEAELDFSDEGDV 182

Query: 185 QNFSSKEVLNDILFLK-NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++    E L  +L  +  D+     Q    E +R+G+ +++LG  N+GKS+L NALA++D
Sbjct: 183 RD--PAEQLRPLLEPQARDMEEMARQAPAAERLRDGFLVLLLGPPNSGKSTLLNALARRD 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIV+ IPGTTRD++ + LDL G  V + DTAG+RE +D +E+ G+ RT   +  ADL+L
Sbjct: 241 VAIVSAIPGTTRDMIEVHLDLGGLPVTLVDTAGLREAEDEIERLGVARTRARIGEADLLL 300

Query: 304 LLKEINSK--KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            L E       E       D + + TK+D+ +      D  IS+ TG GLE LI +I+  
Sbjct: 301 WLSEGGETLVGEEIVAGAADSLRLATKTDIRAAGA--CDLAISAQTGLGLEALIAEIRWR 358

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
              +      ++ + +RH   + +    L +    E    L+I+AE+LR A+ +LG+I G
Sbjct: 359 AQRRLGDGSSAVLTRERHRRLVEEAAAALRVCL--EPGKPLEIVAEDLRAANRALGRIVG 416

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            VDVE +LD +F++FCIGK
Sbjct: 417 SVDVEDVLDAVFAQFCIGK 435


>gi|306842823|ref|ZP_07475463.1| small GTP-binding protein [Brucella sp. BO2]
 gi|306287017|gb|EFM58528.1| small GTP-binding protein [Brucella sp. BO2]
          Length = 349

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 157/347 (45%), Positives = 234/347 (67%), Gaps = 2/347 (0%)

Query: 95  ILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL 154
           +L  L ++P  R+A  GEF+RRAF NGK+DL  AE LADLI++ETE QRRL+++  SG  
Sbjct: 4   MLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLADLIAAETEGQRRLALQVASGNQ 63

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
             LY +W  +L + R+FIEA+LDF++E DV    S +V   +  LK++I  HI+ GK   
Sbjct: 64  RKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVWQQLSALKHEIEHHIASGKRAA 123

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++R+G  +VI+G  NAGKSSL N LA +DVAI+++  GTTRD+L + LDL G  V ++DT
Sbjct: 124 MLRDGLHVVIVGAPNAGKSSLLNFLAGRDVAIISEEAGTTRDLLEVKLDLGGIPVYVTDT 183

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-NIDFIFIGTKSDLYS 333
           AG+RETD +VEK GI+R    +  ADL+L L++++    ++  K   +   IGTK+DL  
Sbjct: 184 AGLRETDSVVEKIGIERARARMAEADLVLSLEDMSEPVPVTVEKIEAETWLIGTKADLGE 243

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
             +  + + IS+ TG GLE+L++ +++    K  ++  ++P+ +RH+  L  T+  +E A
Sbjct: 244 RASGLWKYRISTMTGSGLEQLLDALQAFAEAKIGQIEDAVPTRQRHINLLRATIEEIEKA 303

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   D  L++ AEN+RLAS  LG+ITG VDVE++LD+IFS+FCIGK
Sbjct: 304 -IEGDDLPLELRAENMRLASQFLGRITGDVDVEEILDVIFSQFCIGK 349


>gi|325185944|emb|CCA20448.1| tRNA modification GTPase GTPBP3 putative [Albugo laibachii Nc14]
          Length = 508

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 173/461 (37%), Positives = 268/461 (58%), Gaps = 28/461 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPS---CFQVCEFICKKKKPFPRKASLRYFF-GLDGRIL 61
           +TIFA+ST    + + IIR+SGP    C         +    PR A  R  +  +    L
Sbjct: 50  DTIFALSTAQGRAGVGIIRVSGPDATLCVHALSKQTNQSTIAPRIAEFRKLYHPITKEHL 109

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  +++ FP P+SFTGED  EF VHG  AV++G+L+ L+ +P  R+A PGEF+ RAFEN 
Sbjct: 110 DDAVVLHFPEPKSFTGEDVIEFQVHGSPAVISGVLQALSTVPRCRIAEPGEFTERAFENQ 169

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS-E 180
           K++L++ E+LADL+S+ETE QR  ++  +SG +      W  +L H  ++ EA +DF  +
Sbjct: 170 KMNLMQVEALADLLSAETESQRSQALRQLSGRIGETLEIWQKELIHCLAYTEAMIDFGDD 229

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+DV + S  +++     L++ +  H++ G+ GE++RNG ++ I+G  NAGKSSL N LA
Sbjct: 230 EDDVTDASYTKMIERAKGLQSHMKKHLNDGRRGELLRNGIQVAIIGPPNAGKSSLLNHLA 289

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++  AIV+ I GTTRD++ + L+L+GY V + DTAGIRETDD++EK G+ R     + AD
Sbjct: 290 QRPAAIVSSIAGTTRDIVRVPLNLKGYAVILCDTAGIRETDDLIEKVGVTRARECADEAD 349

Query: 301 LILLLKE----INSKKEISFPKNIDFIFIGTKSDL----------------YSTYTEEYD 340
           + +L+ +        +++S     + I +  KSDL                 ++   E  
Sbjct: 350 ICVLMVDGQLYQTEWEDLSKSWTTNTIIVCNKSDLIDDESTLRKLQRSITSRTSIPAERV 409

Query: 341 HLISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           HLIS   G G++ LI  + +S+ +        S+ + +RH  HL + + YL+    N   
Sbjct: 410 HLISCLNGSGIDALIEALGESVQAKVSSSGDASVITRERHRQHLEKCINYLQEFIDNPHQ 469

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +  AE+LR A   +G+I G VDVEQ+LD+IF +FCIGK
Sbjct: 470 S--EFAAEHLRRAVDGIGRILGRVDVEQVLDVIFEEFCIGK 508


>gi|47217399|emb|CAG00759.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 470

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 179/474 (37%), Positives = 261/474 (55%), Gaps = 44/474 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGR-ILDK 63
           +IFA+S+G     ++++R SGP+       +         PR A LR       R +LD+
Sbjct: 1   SIFALSSGHGRCGVAVVRASGPASSTALRRLAGLTHTLVPPRTALLRSITDPSSREVLDR 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GL+  FP+P SFTGEDS EFH+HGG AV+  +L+ L  +P +R A  GEF+RRAF+ GK+
Sbjct: 61  GLVFWFPAPHSFTGEDSVEFHIHGGPAVIAAVLQALGNVPGMRPAEAGEFTRRAFQAGKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
            L E E L DLI +ETE QRR ++  MSGEL  LY  W  +L    + +EA +DFSE+E 
Sbjct: 121 GLTEVEGLGDLIHAETEAQRRQALRQMSGELGRLYQSWSQRLKRCLAHVEAFIDFSEDEL 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +++      +      + ++  H++  + GE +R+G ++VI G +NAGKSSL N L ++ 
Sbjct: 181 IEDGVLNRGMCAHACSQGEVEQHLTDERRGERLRSGVQVVIAGATNAGKSSLLNTLCQRP 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV+ I GTTRDV+   LD+ G+ V +SDTAG+R++ D+VE+EG++R    +E ADL L
Sbjct: 241 AAIVSPIAGTTRDVVETPLDIGGFPVLLSDTAGLRDSLDLVEREGVRRARERLEQADLTL 300

Query: 304 L---------------------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-- 340
           +                     L+ + S +E   P+    + +  K+DL   + E  +  
Sbjct: 301 VVVDCALLPSHQPEAAGFLKRHLRSVLSLQE--HPERGRVLLVLNKTDLLP-HPERQNLA 357

Query: 341 ------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS--HKRHLYHLSQT 386
                        LIS  TGEGL++ +  + S + N         PS    RH  HL Q 
Sbjct: 358 RELARASGLPPVCLISCHTGEGLQDFLAALHSSVRNLCADPLAGAPSLTQARHRAHLQQC 417

Query: 387 VRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              L     + +D  L + AE +RLA  SLG+ITG V  E++LDIIF  FCIGK
Sbjct: 418 CAALAQYQ-SYRDVDLALAAEGVRLALTSLGRITGRVGAEEILDIIFKDFCIGK 470


>gi|298293756|ref|YP_003695695.1| tRNA modification GTPase TrmE [Starkeya novella DSM 506]
 gi|296930267|gb|ADH91076.1| tRNA modification GTPase TrmE [Starkeya novella DSM 506]
          Length = 458

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 177/451 (39%), Positives = 260/451 (57%), Gaps = 21/451 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDK 63
           ++TI AVS+G    A+++IR+SGP+  +    +  +  P PR+A L        G +LD+
Sbjct: 14  RDTIAAVSSGT-GGAVAVIRISGPAAGEALVALADRL-PEPRRAMLAKLRDPSSGEVLDE 71

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GL + FP P S TGED AE  +HGG AVV  +L  L  +P LR A  GEF+RRAF NG++
Sbjct: 72  GLALWFPGPRSATGEDMAELQIHGGRAVVAAVLGALFALPGLRPAERGEFTRRAFLNGRL 131

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE LADLI++ETE QRRL+     G L     +W  +L    + IEA +DFS+EED
Sbjct: 132 DLTQAEGLADLIAAETEGQRRLAFAHAFGHLGQRVEEWRRRLIRAMALIEAGIDFSDEED 191

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   +      ++  L  ++ + ++  + G ++R G  I I G  NAGKSSL NALA ++
Sbjct: 192 VPAEARVMARPEVEALLGELDAALAD-RRGAMVREGALIAIAGLPNAGKSSLINALAARE 250

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIV+D PGTTRDVL + LDL G+ V + DTAG+RE +  VE EGI+R    +  ADL+L
Sbjct: 251 IAIVSDEPGTTRDVLEVALDLSGHKVTLVDTAGLREAEGKVEAEGIRRAHARIAEADLVL 310

Query: 304 LLKEIN------SKKEISFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGL 351
            + +        ++ +I      +   +  K D          +T+     IS+  G GL
Sbjct: 311 WVHDAAEGPPPVARPQIEAAAGAELWLVANKLDEVGAVPPTGGWTDRA-FAISAKYGTGL 369

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD--IIAENL 409
           E LI+ + + ++ + +         +RH     +   +L +A L E DC LD  ++AE L
Sbjct: 370 EALIDAVGAFVAERARGAEHPALIRERHRMSALEAAGHLRVA-LWEWDC-LDDELLAEEL 427

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           RLA  +LG++TG + VE LLD++F +FCIGK
Sbjct: 428 RLAGRALGRMTGTIGVEDLLDVVFREFCIGK 458


>gi|197106988|ref|YP_002132365.1| thiophene and furan oxidation protein ThdF [Phenylobacterium
           zucineum HLK1]
 gi|254811489|sp|B4RD04|MNME_PHEZH RecName: Full=tRNA modification GTPase mnmE
 gi|196480408|gb|ACG79936.1| thiophene and furan oxidation protein ThdF [Phenylobacterium
           zucineum HLK1]
          Length = 445

 Score =  302 bits (773), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 177/451 (39%), Positives = 264/451 (58%), Gaps = 24/451 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA +T    +A++++R+SGP   Q          P PR+AS+R  F  DG  +D+ L
Sbjct: 3   DTIFAPATAPGRAAVAVVRVSGPRT-QTAVRTLAGDLPEPRRASVRRLFDADGGEIDQAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P S+TGED+AEFHVHGG AV   ++E LA +  LRLA PGEF+RRAFENGK+DL
Sbjct: 62  VLWFPGPGSYTGEDAAEFHVHGGTAVTGALVEALAGL-GLRLAEPGEFTRRAFENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE +ADLI SETE QRR ++E + G LS +  +W + LT   +  EA +DF +EE   
Sbjct: 121 AQAEGVADLIDSETEGQRRQALEQLGGRLSQVQARWREALTEALALFEAAVDFPDEEVPA 180

Query: 186 NFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           + +++   VL  +       ++  ++G   E +R G++I ++G  NAGKS+L NALA ++
Sbjct: 181 DVAARARPVLETLAAEIEAAAADAARG---ERVREGFRIALVGAPNAGKSTLLNALAGRE 237

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT  PGTTRDV+ + + L GY V ++DTAG+R+T D +E EG++R     E ADL L
Sbjct: 238 AAIVTATPGTTRDVIEVPMVLAGYKVLMADTAGLRDTADEIEAEGVRRARAWAEGADLRL 297

Query: 304 LLKEINSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK--- 357
            L + +S++    P  I   D   I TK DL       +   ++   G    E+  +   
Sbjct: 298 WLVDGSSEETPDLPAEIGEGDLCLI-TKRDLPVGNAGAWAAEVARRIGIPAAEVTARGPG 356

Query: 358 ----IKSILSNK-FKKLPFSIPSHKRHLYH---LSQTVRYLEMASLNEKDCGLDIIAENL 409
               +K  LS +  + L    P     L H   L++    L  A  +++   +++ AE++
Sbjct: 357 DMAWLKETLSERVVESLGGGEPPAATRLRHRELLAEASERLRHAIGHDEH--VELAAEDV 414

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           RLA+ +L +ITG +D E +L  IF+ FCIGK
Sbjct: 415 RLAARALDRITGRIDPEAVLGRIFATFCIGK 445


>gi|148251782|ref|YP_001236367.1| tRNA modification GTPase TrmE [Bradyrhizobium sp. BTAi1]
 gi|205829150|sp|A5E8G7|MNME_BRASB RecName: Full=tRNA modification GTPase mnmE
 gi|146403955|gb|ABQ32461.1| tRNA modification GTPase trmE [Bradyrhizobium sp. BTAi1]
          Length = 445

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 178/447 (39%), Positives = 258/447 (57%), Gaps = 9/447 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA+S+G  PSAI+I+RLSG       + +  K  P PR A+        G  
Sbjct: 1   MHPHDQTIFALSSGRPPSAIAIVRLSGVGAGPALQTLTGKLPP-PRLATRALLRDDRGDP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ FP P S TGED AE HVHG  AV+  ++  L+ MP +R A+ GEF+RRAFEN
Sbjct: 60  IDDAVVLWFPGPASATGEDVAELHVHGSRAVITTLVSLLSAMPQMRAADRGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL EAE L DLI ++T+ QRR ++  + G L      W D++    + IEA +DF++
Sbjct: 120 GKIDLTEAEGLDDLIHADTDRQRRQALRQLKGLLGDKARSWRDQIIQAAALIEAGIDFAD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV        L  I  L  +I   ++     E +R+G  +VI G  NAGKS+L N LA
Sbjct: 180 EGDVPAELIAPALAWIRQLLAEIEEVLAAQGRAERLRDGLTVVIAGPPNAGKSTLMNQLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRD++ + LDL+GY V + DTAGIR+TDD VE+EG++R       AD
Sbjct: 240 RREVAIVSPHAGTTRDLIEVALDLDGYPVTVIDTAGIRQTDDPVEQEGVRRARDRAAQAD 299

Query: 301 LILLLKEINSKK-------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           L+L L E +  +        I F +N   + I  +S   S   E     IS+ +G G+ +
Sbjct: 300 LVLWLTEDDQAELERQTDGPIWFVRNKIDLMITEQSGAISVSPESPVFAISARSGAGMSD 359

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L+  +     + F      + + +R    LS+T   L   S+   D G ++ AE LR+A+
Sbjct: 360 LLEALVGFARDYFGATEHGLITRERQRTWLSETAAALRR-SIAAVDLGEELAAEELRIAA 418

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++LG++ G VDVE LLD+IF +FCIGK
Sbjct: 419 LALGRLLGRVDVEDLLDVIFREFCIGK 445


>gi|220921039|ref|YP_002496340.1| tRNA modification GTPase TrmE [Methylobacterium nodulans ORS 2060]
 gi|219945645|gb|ACL56037.1| tRNA modification GTPase TrmE [Methylobacterium nodulans ORS 2060]
          Length = 434

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 174/438 (39%), Positives = 258/438 (58%), Gaps = 9/438 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDKG 64
           +TIFA ++G   +A++++R+SGP      E + ++  P PR+ SLR       G ILD+ 
Sbjct: 3   DTIFAPASGFGRAAVAVVRISGPGAAAALEALTRQPPPPPRRLSLRTLVAPGSGEILDRA 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+   P+P +FTGEDS E  +HGG AV   +L  LA +P L  A PG F+RRAF NG++D
Sbjct: 63  LVAWMPAPGTFTGEDSVELQLHGGPAVRAAVLRALAHLPGLAPAEPGAFTRRAFLNGRMD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR +M  + G LS L   W   L  + +  EA LDFS+E DV
Sbjct: 123 LTEVEGLADLIDAETEAQRRQAMRQLDGALSRLVEDWRATLLDVLAMTEAALDFSDEGDV 182

Query: 185 QNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
              + +   L     +++ I S ++ G+ GE +R G  +V+ G  NAGKS+L NALA++D
Sbjct: 183 DAETLTTAGLAAATRVRDGILSALANGRRGERLREGLMVVLAGAPNAGKSTLLNALARRD 242

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV+ IPGTTRD + +  DL G  V + DTAG+RE+ D +E EG+ R+   + +ADL+L
Sbjct: 243 AAIVSAIPGTTRDAIEVRCDLGGLPVMLVDTAGLRESVDAIEVEGMARSRRRIADADLVL 302

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSIL 362
            L       E + P     + + TK+DL S      D L IS+ TG+GL+ L+++I+   
Sbjct: 303 WLVPPEGSGE-TPPAGA--LVVRTKADLSS--PSPGDGLAISALTGQGLDALLDRIEVSA 357

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
                +   ++ + +R    L     +L+ A         +++AE+LRLA  +LG++ G 
Sbjct: 358 QAALGQ-GDAVVTRERQRLALESCAEHLDRAIAGAASLPAELVAEDLRLAVRALGEVAGR 416

Query: 423 VDVEQLLDIIFSKFCIGK 440
           V VE++LD +F+ FCIGK
Sbjct: 417 VGVEEMLDRLFASFCIGK 434


>gi|182678268|ref|YP_001832414.1| tRNA modification GTPase TrmE [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|205829118|sp|B2IJQ3|MNME_BEII9 RecName: Full=tRNA modification GTPase mnmE
 gi|182634151|gb|ACB94925.1| tRNA modification GTPase TrmE [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 451

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 174/441 (39%), Positives = 257/441 (58%), Gaps = 14/441 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSC---FQVCEFICKKKKPFPRKASLRYFFGLD-GRIL 61
           ETIFA ++G   SA++I+R+SGP            C    P PR+A+L      + G  L
Sbjct: 19  ETIFAPASGQGRSAVAIVRVSGPKAGFLLGALAGYC----PEPRRATLAILHDPENGEAL 74

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L++ FP P+SFTGED AEFHVHGG AV+ G+L  L +   +R A PGEF+RRA  NG
Sbjct: 75  DEALVLWFPGPKSFTGEDCAEFHVHGGRAVMAGLLAALGRFEQVRPAEPGEFTRRALLNG 134

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL E E LAD+I +ETE QRR ++  M G LS     W   L    S  EA++DFS+E
Sbjct: 135 KLDLAEVEGLADMIEAETEWQRRQALRQMRGALSRQAEMWRQALLEALSLAEAEIDFSDE 194

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            DV   +S+ V   I  +  D+ + + Q + GE IR G  IVI+G  NAGKS+L NALA+
Sbjct: 195 ADVPPETSRRVAALIEPVLADLRAELGQARAGERIREGLSIVIMGPPNAGKSTLLNALAR 254

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++VAIV++I GTTRD++ + LDL+G  V ++DTAG+R+  D +E+ GI R +     ADL
Sbjct: 255 REVAIVSEIAGTTRDLIEVHLDLKGCAVVLTDTAGLRDNADKIEQIGIARAYERGREADL 314

Query: 302 ILLLKEINSKKEISFPKNI--DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
           +L L E  ++  ++ P+N+  +   + TK+D            IS+ +G  L  L+  I 
Sbjct: 315 VLWLSE--AEAPVAPPENLGMEVWPVFTKADRVEPLENREGLAISATSGLHLGRLVEAIA 372

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
                        + +  RH     +    L+   + E    ++++AE+LRLA+ +L  +
Sbjct: 373 DFAGKLAPSGHAGLITRARHRQAFERAAAALDR-CIREASP-VELLAEDLRLAAQALLSL 430

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG ++ E++L  IF++FCIGK
Sbjct: 431 TGRIETEEILGEIFARFCIGK 451


>gi|157104146|ref|XP_001648272.1| GTP binding protein (mitochondrial), putative [Aedes aegypti]
 gi|108880387|gb|EAT44612.1| GTP binding protein (mitochondrial), putative [Aedes aegypti]
          Length = 493

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 187/478 (39%), Positives = 282/478 (58%), Gaps = 47/478 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILD 62
           + TIF +S+G+    ++++R+SG +C  V +   +    P PRKA LR  F      ++D
Sbjct: 21  RPTIFGLSSGSGKCGVAVVRVSGDACRDVMKIKTQSVTLPEPRKAVLRRIFHSKTTEMID 80

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           KGL++ FP P SFTGEDS EFHVHGG+AVV+ + + L  +  +RLA PGEF++RAF  GK
Sbjct: 81  KGLVLWFPGPNSFTGEDSVEFHVHGGVAVVSAMYDSLGSIDGVRLAEPGEFTKRAFYAGK 140

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL E E LADLI +ETE QR+ +M   +GELS +Y +  ++L    + IEA +DF+E++
Sbjct: 141 MDLTEVEGLADLIEAETEAQRKQAMLQANGELSKVYNELRNRLLRCIANIEAYIDFAEDQ 200

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV +   + V  D+  +  D+ +H++  + GE +R+G + VI+G  N GKSS  N L+ +
Sbjct: 201 DVGDDVFESVKTDVASIIVDVKAHLNDQRRGERLRSGVRTVIIGAPNVGKSSFVNLLSNR 260

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADL 301
            V+IVT++ GTTRD++    D+ GY V ++DTAG+R ET DI+E EGI R    +  AD 
Sbjct: 261 KVSIVTNVAGTTRDIIESHHDIGGYPVILADTAGLRKETSDIIEHEGITRAKDYLTEADF 320

Query: 302 ILLLKEI--------NSKKE-----------ISFPKNI----DFIFIGTKSDLYSTYTEE 338
           I+L+ +         +SKK+           + F +NI    + + I  K DL S   EE
Sbjct: 321 IVLIVDAGNLQSYLKSSKKQFDDYLDHYVTSLGFKENIIRDSNCMIIINKVDLLS---EE 377

Query: 339 YDH---------LISSFTGEGLEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           + +         ++S  TGEGL+ ++ KI    K +  N  ++ P    S +R+ +HL  
Sbjct: 378 FRNAIDRTKNLSMLSCQTGEGLQNVLEKITENLKHLCGNPCRESPN--ISQQRYRHHLKA 435

Query: 386 TVRYLE--MASLNE-KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++YLE   A L+   +  L I  + LR A   +G ITG VD E++LD+IF  FCIGK
Sbjct: 436 CIQYLEKYYAYLSHGPNPDLAIATQYLRNAVRCIGMITGNVDTEEILDVIFRTFCIGK 493


>gi|91076116|ref|XP_969524.1| PREDICTED: similar to GTP binding protein (mitochondrial), putative
           [Tribolium castaneum]
 gi|270014577|gb|EFA11025.1| hypothetical protein TcasGA2_TC004613 [Tribolium castaneum]
          Length = 479

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 189/473 (39%), Positives = 267/473 (56%), Gaps = 44/473 (9%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILD 62
           ++ TI+A+S+G     +++IR+SG S     + +     P PR A LR         +LD
Sbjct: 15  KQSTIYALSSGQGKCGVAVIRVSGASTELALKCLTGLTNPKPRTAILRSIKHPSSHEVLD 74

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           KGL++ FP P SFTGEDS EFHVHGGIAVV+ +L  L  +P+ RLA PGEF+RRAF N K
Sbjct: 75  KGLVLWFPGPHSFTGEDSCEFHVHGGIAVVSSVLNALGSLPDCRLAEPGEFTRRAFHNAK 134

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL E E LADL+ +ETE+QR+ +     G LS LY +W   L    + +EA +DF E E
Sbjct: 135 LDLTEVEGLADLLQAETEIQRKQAFLQTQGALSKLYNRWRGSLIKSVAHVEAHIDFEETE 194

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +       V+ +I  ++++I  H++ G+ GE++R G K VILG  N GKSSL N L K+
Sbjct: 195 TIDEGVLDLVVQEIQIMRDEIRKHLNDGRKGELLRTGVKTVILGAPNVGKSSLMNLLCKR 254

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADL 301
             AIVT I GTTRD+L + L++ GY + ++DTAG+R ET+DI+EKEGI R     + ADL
Sbjct: 255 PAAIVTPIEGTTRDILEVTLNIGGYPLVLTDTAGLRSETNDIIEKEGIIRAKNSYDCADL 314

Query: 302 ILLLKEINSKKEISF-----PK-------------------NIDFIFIGTKSDLYSTYTE 337
           ++L+  ++S K  S+     P                    N + + +  KSDL     +
Sbjct: 315 VILV--LDSLKVYSWLHNHPPSSTSDYLKCYIEKLGLYDLINKECVIVFNKSDLVQDLLD 372

Query: 338 ----EYDHLISSFTGEGLEELINKIKSILSNKFKKL----PFSIPS--HKRHLYHLSQTV 387
               E  HL S  + +G+  L+N I     NK +KL        PS    RH  HLS  +
Sbjct: 373 LQNSEIVHL-SCKSEDGVSNLVNTI----GNKLRKLCGEPSAEHPSMNQVRHRQHLSNCL 427

Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + L+ +        + ++AE+LR A   LG + G    EQLLD+IF  FCIGK
Sbjct: 428 KCLDSSLDRSSSDTV-LMAEHLRKALRHLGYLVGATTTEQLLDVIFKDFCIGK 479


>gi|254418996|ref|ZP_05032720.1| tRNA modification GTPase TrmE [Brevundimonas sp. BAL3]
 gi|196185173|gb|EDX80149.1| tRNA modification GTPase TrmE [Brevundimonas sp. BAL3]
          Length = 436

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 173/442 (39%), Positives = 266/442 (60%), Gaps = 14/442 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TIFA++T     AI+++RLSGP        +   +   PR AS+R      G  +D+ 
Sbjct: 3   QDTIFALATPPGRGAIAVMRLSGPGVDAALTALGATRLK-PRMASVRDL-AYAGDHIDQA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F +P S+TGEDSAE H+HGG AVV      L  +  +R A PGEF+RRAF+NG++D
Sbjct: 61  LVLRFVAPHSYTGEDSAELHLHGGRAVVEAASGALIAL-GVRPAEPGEFTRRAFQNGRMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI +ET  Q R ++  + G+LS  Y  +   L H  + +EA++DF +E+  
Sbjct: 120 LAQAEAVADLIDAETAAQARQALGQLDGKLSETYAGFRRDLLHALALVEAEIDFPDEDVP 179

Query: 185 QNFS--SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            N +  +  VL+    L  D+   +  G+ GE +R+GY+IV++G +NAGKSSLFNAL ++
Sbjct: 180 DNLARTAGPVLD---RLAEDLRRAVDTGRRGERVRDGYRIVLIGETNAGKSSLFNALVER 236

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT I GTTRDVL  DL + GY V +SDTAG+RE+ D VE EG++R  +  E ADL 
Sbjct: 237 EAAIVTPIAGTTRDVLDADLVIGGYAVTLSDTAGLRESADPVEAEGVRRARMRAEQADLR 296

Query: 303 LLLKEINSKKEI--SFPKNIDFIFIGTKSDL-YSTYTEEYDHL-ISSFTGEGLEELINKI 358
           L ++       +  ++ +  D + +  K+DL  S  +  +D + +SS +GEGL  L + I
Sbjct: 297 LWVRAPGDPDGVAAAYARPGDLV-VANKADLGGSVPSGGFDRIEVSSRSGEGLLLLRDWI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
            + L+       F   + +RH   L++ +  +E A     D G ++  E+LR A+ +L +
Sbjct: 356 ATRLAQDLSGADFPAVTRERHRLRLNEALEAVE-AGRRALDAGPEMAGEDLRRAAEALSR 414

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           +TG + VE +L  +FS FCIGK
Sbjct: 415 VTGAIGVEDILGEVFSTFCIGK 436


>gi|254488767|ref|ZP_05101972.1| tRNA modification GTPase TrmE [Roseobacter sp. GAI101]
 gi|214045636|gb|EEB86274.1| tRNA modification GTPase TrmE [Roseobacter sp. GAI101]
          Length = 428

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 171/440 (38%), Positives = 256/440 (58%), Gaps = 18/440 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFFGLDGRILDK 63
           +TIFA +T    + + ++R+SGP  F + E I     P P  R+A++R   G DG ++D 
Sbjct: 2   DTIFAQATAQGRAGVCVVRISGPQAFDIAEKIAF---PLPEVRQAAVRPIIGQDGGVIDS 58

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L++ F  P SFTGED  E H+HG IAVV  +L  L+  P+ RLA PGEF+RRA ENGK+
Sbjct: 59  ALVLTFKGPSSFTGEDVVELHLHGSIAVVRAVLALLSTFPDTRLAEPGEFTRRAMENGKL 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL + E L DLI +ETE QR+ ++  +SG L      W +KL    + +E  +DF+ +ED
Sbjct: 119 DLTQVEGLGDLIEAETEAQRKQALRVLSGHLGQRVDAWREKLIRAAALLEVTIDFA-DED 177

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V    S EV   +  + +D+   I+     E IR G+++ I+G  NAGKS+L NALA +D
Sbjct: 178 VPVDVSPEVRGLLRDVNDDLLKEIAGTHTAERIRTGFEVAIIGRPNAGKSTLLNALAGRD 237

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AI + + GTTRDV+ + +DL G  V + DTAG+R+  D VE  GI+R      +ADL +
Sbjct: 238 AAITSAVAGTTRDVIEVRMDLGGLPVTLLDTAGLRDGADEVEAIGIERALKRAADADLRI 297

Query: 304 LLKEINSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
            L E +    + + P++   I +  K+DL     +  +  IS  TG+G+ +LI+ +++IL
Sbjct: 298 FLVEDDEDLPVAALPED---IRMRPKADLR----DSAEGAISGTTGQGVSQLISTVQAIL 350

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLRLASVSLGKIT 420
               + L   + +H+RH   L +    L   M+ L+      DI +E LR +  +L  + 
Sbjct: 351 GA--RSLTAGLATHERHRVALQKAADGLSVSMSVLDHGPDQYDIASEELRHSIRALEALV 408

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G +DVE LLD+IFS FC+GK
Sbjct: 409 GRIDVENLLDVIFSSFCLGK 428


>gi|17939531|gb|AAH19261.1| GTP binding protein 3 (mitochondrial) [Homo sapiens]
 gi|123982804|gb|ABM83143.1| GTP binding protein 3 (mitochondrial) [synthetic construct]
 gi|123997475|gb|ABM86339.1| GTP binding protein 3 (mitochondrial) [synthetic construct]
          Length = 492

 Score =  298 bits (764), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 177/464 (38%), Positives = 260/464 (56%), Gaps = 36/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R    +E ADLIL 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 334

Query: 305 LKEINSKKEISFPKNIDF--------------------IFIGTKSDLYSTYTEEYDH--- 341
           + + +   +++ P + +F                    + +  KSDL S           
Sbjct: 335 MLDAS---DLASPSSCNFLATVVASVGAQSPSDSSQHLLLVLNKSDLLSPEGPGPGPDLP 391

Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLN 396
              L+S  TGEGL+ L+  ++  L+          P  +  RH +HL   +  L      
Sbjct: 392 PHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-Q 450

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            KD  L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 451 SKD--LALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 492


>gi|126734408|ref|ZP_01750155.1| tRNA modification GTPase [Roseobacter sp. CCS2]
 gi|126717274|gb|EBA14138.1| tRNA modification GTPase [Roseobacter sp. CCS2]
          Length = 426

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 169/439 (38%), Positives = 258/439 (58%), Gaps = 18/439 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T    S ++I+R+SGP   Q    +       P    +R      G +LD+ L
Sbjct: 2   DTIFALATAQGRSGVAIVRISGPFAVQATSRLAGS---VPDARGVRQLRDARGELLDQAL 58

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP+ +SFTGE   E H+HG  AVV+ +L  L  MP LR A  GEF+RRA ENG+++L
Sbjct: 59  ILRFPNGQSFTGEVVVELHLHGSPAVVHAVLRCLGDMPELRQAEAGEFTRRALENGRLNL 118

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E LADLI +ETE QR+ ++   SG L  L   W  +L    + +EA +DF++EE   
Sbjct: 119 AEVEGLADLIDAETESQRKQAVRVFSGALGELADSWRVRLIRAAALLEATIDFADEEVPV 178

Query: 186 NFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           + S +  +ND+L  ++ ++       ++ E +R+G+++ I+G  N GKS+L N LA +DV
Sbjct: 179 DVSPE--VNDLLAHVRQEMVREADGVRVAERVRDGFEVAIIGAPNVGKSTLLNRLAGRDV 236

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI +++ GTTRDV+ + +DL+G  V + DTAG+RETDD+VE  G+ R     E AD  + 
Sbjct: 237 AITSEVAGTTRDVIEVQMDLDGLPVTLLDTAGVRETDDVVEGLGVARALERAERADFRIH 296

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILS 363
           L  + +  + S P   D + +  KSDL+     + D + +S  TG+G++++I ++   L 
Sbjct: 297 L--LMAPNDTSAPSGPDDLIVQAKSDLH-----DGDGMAVSGKTGDGIDQMIARVSGRLQ 349

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITG 421
            K  ++   I   +RH   L   V YL+   A+L + D   D+IAE+LR A  ++  I G
Sbjct: 350 EKVGQI--GIAMRERHRVALVGAVGYLDDATAALGQSDMMTDLIAEDLRSAIRAVDSIVG 407

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            VDVE +LD IFS FCIGK
Sbjct: 408 RVDVEHVLDEIFSSFCIGK 426


>gi|193082991|ref|NP_116009.2| tRNA modification GTPase GTPBP3, mitochondrial isoform V [Homo
           sapiens]
 gi|313104112|sp|Q969Y2|GTPB3_HUMAN RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial;
           AltName: Full=GTP-binding protein 3; AltName:
           Full=Mitochondrial GTP-binding protein 1; Flags:
           Precursor
 gi|13650157|gb|AAK37568.1| mitochondrial GTP-binding protein 1 [Homo sapiens]
          Length = 492

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 177/464 (38%), Positives = 260/464 (56%), Gaps = 36/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R    +E ADLIL 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 334

Query: 305 LKEINSKKEISFPKNIDF--------------------IFIGTKSDLYSTYTEEYDH--- 341
           + + +   +++ P + +F                    + +  KSDL S           
Sbjct: 335 MLDAS---DLASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLP 391

Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLN 396
              L+S  TGEGL+ L+  ++  L+          P  +  RH +HL   +  L      
Sbjct: 392 PHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-Q 450

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            KD  L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 451 SKD--LALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 492


>gi|154245777|ref|YP_001416735.1| tRNA modification GTPase TrmE [Xanthobacter autotrophicus Py2]
 gi|154159862|gb|ABS67078.1| small GTP-binding protein [Xanthobacter autotrophicus Py2]
          Length = 431

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 172/444 (38%), Positives = 260/444 (58%), Gaps = 24/444 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRILD 62
           +T+FA+S+G LP+ ++++R+SGP        +C    P PR A  RY    D   G  LD
Sbjct: 3   DTLFALSSGRLPAGVAVLRISGPEAAAAVLALCGVLPP-PRVA--RYGALSDPRTGETLD 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +GL++ FP P S TGED AE H+HGG AVV  +L  L+ +P LR A  GEF+RRA  NGK
Sbjct: 60  RGLILFFPGPASATGEDVAELHLHGGRAVVAAVLRALSALPGLRPAEAGEFTRRAHANGK 119

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL E E LADL+++E+E QR+ ++   SG LS    +W   L    + IEA +DFS+E 
Sbjct: 120 LDLAEVEGLADLVAAESEAQRKQALALASGALSRRVEEWRVGLVSALALIEAGIDFSDES 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV    + + +  +  LK ++ + ++    GE +R+G  + I G  NAGKS+L N LA +
Sbjct: 180 DVSGEVTMDAVARLARLKEELLAALTDAARGERVRDGLVVAISGPPNAGKSTLLNRLAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+ +PGTTRDVL + L+L G  V + DTAG+RET D+VE EG++R     E AD++
Sbjct: 240 EAAIVSALPGTTRDVLEVHLELAGQAVTLLDTAGLRETSDLVEAEGVRRALARAEGADVV 299

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           L L +  S+     P     + + TK D  +     +   IS+ +G G++ L+++++   
Sbjct: 300 LWLCDTGSQPP---PALAHAVKVRTKIDRDAAIPLGWIG-ISAASGAGVDTLVSRLEQEA 355

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG-----LDIIAENLRLASVSL 416
                + P  I   ++         R LE+A+L+ E+  G      ++ AE++RLA  +L
Sbjct: 356 DRLGGREPALITRERQR--------RALEVATLHLERALGDFGGHEELRAEDVRLAVRAL 407

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            ++ G VDVE +LD +FS FCIGK
Sbjct: 408 DQLIGRVDVEDVLDALFSTFCIGK 431


>gi|13786071|gb|AAK39555.1| mitochondrial GTP binding protein 1 [Homo sapiens]
 gi|14042398|dbj|BAB55228.1| unnamed protein product [Homo sapiens]
 gi|16877978|gb|AAH17207.1| GTP binding protein 3 (mitochondrial) [Homo sapiens]
 gi|19335745|gb|AAL85493.1| GTP-binding protein isoform V [Homo sapiens]
 gi|119605003|gb|EAW84597.1| GTP binding protein 3 (mitochondrial), isoform CRA_a [Homo sapiens]
 gi|158257290|dbj|BAF84618.1| unnamed protein product [Homo sapiens]
          Length = 492

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 177/464 (38%), Positives = 260/464 (56%), Gaps = 36/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R    +E ADLIL 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 334

Query: 305 LKEINSKKEISFPKNIDF--------------------IFIGTKSDLYSTYTEEYDH--- 341
           + + +   +++ P + +F                    + +  KSDL S           
Sbjct: 335 MLDAS---DLASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLP 391

Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLN 396
              L+S  TGEGL+ L+  ++  L+          P  +  RH +HL   +  L      
Sbjct: 392 PHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-Q 450

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            KD  L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 451 SKD--LALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 492


>gi|158301166|ref|XP_320903.3| AGAP002133-PA [Anopheles gambiae str. PEST]
 gi|157012341|gb|EAA00934.3| AGAP002133-PA [Anopheles gambiae str. PEST]
          Length = 486

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 179/467 (38%), Positives = 271/467 (58%), Gaps = 33/467 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASL-RYFFGLDGRILDKG 64
           TIF +S+G     +++IR+SG +   + +   + K  P PR+A L + F G    ++D+G
Sbjct: 20  TIFGLSSGFGKCGVAVIRVSGSASRAIVDKKTRLKSFPEPRRAVLTKIFHGQTNAMIDRG 79

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LL+ FP P+SFTGED+ EFHVHGG A+V+ + + LA  P+ R+A PGEF++RAF  GK+D
Sbjct: 80  LLLWFPGPQSFTGEDTIEFHVHGGTAIVSAMYDSLATFPDTRIAEPGEFTKRAFYAGKMD 139

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QR+ ++   +G+LSS Y     +L    + IEA +DF+E++DV
Sbjct: 140 LTEVEGLADLIHAETEAQRKQALRQANGQLSSFYNDLRTQLVQAIASIEAYIDFAEDQDV 199

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +      + +I      + +H++  + GE +RNG +  I+G  N GKSSL N L++++V
Sbjct: 200 DDNVLSVAVQNIEGAIGQLKAHLNDNRRGERLRNGVRTAIVGAPNVGKSSLINLLSQRNV 259

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLIL 303
           +IVT I GTTRD++    D+ GY V + DTAG+R+ T+D+VE EGI R    VE+ADL+L
Sbjct: 260 SIVTSIAGTTRDIVESHYDIGGYPVILGDTAGLRQGTEDVVESEGIARARAYVESADLLL 319

Query: 304 LLKEINSKKEI------------SFPKNIDF----IFIGTKSDLYSTYTEEY--DH---- 341
           L+ + +  + +            +   + D     + +  K DL ++ T E    H    
Sbjct: 320 LVVDASRVETVDRLDTYLREYMETLGLDADMMSRALIVLNKCDLLTSGTWERLSAHNNSF 379

Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEK 398
             +S  T  GL EL+ ++K+ L           P  S +RH YHL Q +  LE       
Sbjct: 380 SFLSCQTQSGLPELLERLKTRLVQLCGDPSVESPTISQERHRYHLKQCLACLEQFRDYFH 439

Query: 399 DCG-----LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + G     L I+  +LR A   +GKITG V+ +++LD+IFS FCIGK
Sbjct: 440 ETGAPNRDLAIVTHHLRNAVRCIGKITGTVETDEILDVIFSTFCIGK 486


>gi|163732963|ref|ZP_02140407.1| tRNA modification GTPase TrmE [Roseobacter litoralis Och 149]
 gi|161393498|gb|EDQ17823.1| tRNA modification GTPase TrmE [Roseobacter litoralis Och 149]
          Length = 428

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 176/441 (39%), Positives = 262/441 (59%), Gaps = 20/441 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +T+FA+++    + +S+IR+SG + + V E +C    P PRK+++R+    DG ++D+ L
Sbjct: 2   DTVFALASAQGRAGVSVIRISGHTAWAVAEHLCGAL-PEPRKSAVRFIRSQDGTVIDQAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED  EFHVHG IAVV  IL EL+   + R+A  GEF+RRA ENGK+DL
Sbjct: 61  VLAFKGPHSFTGEDVVEFHVHGSIAVVRAILAELSDQGSARMAEAGEFTRRALENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ ++  ++G L      W  KL    + IEA +DF+ +EDV 
Sbjct: 121 SQVEGLADLIDAETEAQRKQAVRVLTGSLGDKVEIWRTKLIRAAALIEATIDFA-DEDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV + +  +  DI S I+   + E IR+G+++ ++G  NAGKS+L N L+ +D A
Sbjct: 180 VDVTPEVTSLLKDVSCDIESEIAGTHVAERIRSGFEVALVGAPNAGKSTLLNKLSGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++I GTTRDV+ + +DL G  V   DTAG+R++ D +EK GI+R      +ADL + L
Sbjct: 240 ITSEIAGTTRDVIEVRMDLGGLPVTFLDTAGLRQSTDEIEKIGIERAIARARDADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            +  S+K +  P   D   I  K DL      E D  IS  TG+G+ EL+ KI +I   +
Sbjct: 300 SK-PSEKLLIDPVEDDIQLI-PKVDLLP----ETDLGISGKTGQGIPELLEKIGTIFGKR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKI 419
              +   + +H+RH + + + ++ L+    N  D  L      DI A+ LR A  SL  +
Sbjct: 354 VSGV--GLATHERHRFAMQRALKDLD----NSFDALLRGPEFYDITAQELRSAIRSLETL 407

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
            G +D E LLD IFS FC+GK
Sbjct: 408 VGRIDAENLLDEIFSSFCLGK 428


>gi|221042034|dbj|BAH12694.1| unnamed protein product [Homo sapiens]
          Length = 514

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 177/464 (38%), Positives = 260/464 (56%), Gaps = 36/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 57  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 116

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 117 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 176

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 177 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 236

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 237 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 296

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R    +E ADLIL 
Sbjct: 297 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 356

Query: 305 LKEINSKKEISFPKNIDF--------------------IFIGTKSDLYSTYTEEYDH--- 341
           + + +   +++ P + +F                    + +  KSDL S           
Sbjct: 357 MLDAS---DLASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLP 413

Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLN 396
              L+S  TGEGL+ L+  ++  L+          P  +  RH +HL   +  L      
Sbjct: 414 PHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-Q 472

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            KD  L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 473 SKD--LALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 514


>gi|306518614|ref|NP_001182351.1| tRNA modification GTPase GTPBP3, mitochondrial isoform VII [Homo
           sapiens]
          Length = 514

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 177/464 (38%), Positives = 260/464 (56%), Gaps = 36/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 57  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 116

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 117 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 176

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 177 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 236

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 237 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPV 296

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R    +E ADLIL 
Sbjct: 297 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 356

Query: 305 LKEINSKKEISFPKNIDF--------------------IFIGTKSDLYSTYTEEYDH--- 341
           + + +   +++ P + +F                    + +  KSDL S           
Sbjct: 357 MLDAS---DLASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLP 413

Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLN 396
              L+S  TGEGL+ L+  ++  L+          P  +  RH +HL   +  L      
Sbjct: 414 PHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-Q 472

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            KD  L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 473 SKD--LALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 514


>gi|149912889|ref|ZP_01901423.1| tRNA modification GTPase TrmE, putative [Roseobacter sp. AzwK-3b]
 gi|149813295|gb|EDM73121.1| tRNA modification GTPase TrmE, putative [Roseobacter sp. AzwK-3b]
          Length = 428

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 172/435 (39%), Positives = 248/435 (57%), Gaps = 8/435 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+ST    + ++IIR+SGP  F   + +     P PR+ASLR     DG  LD+ L
Sbjct: 2   DTIYALSTAQGKAGVAIIRVSGPLAFGAAQALAGAV-PSPREASLRILRAPDGMRLDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F    SFTGED  EFHVHG  AVV  +L+ L+ + +LR A PGEF+RRA ENG +DL
Sbjct: 61  VLTFAQGHSFTGEDIVEFHVHGSTAVVAAVLDALSTLDDLRPAEPGEFTRRALENGCLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QRR ++  +SG+L      W   L    + +EA +DF+ +EDV 
Sbjct: 121 AQVEGLADLIDAETESQRRQALRVLSGDLGKRAETWRTSLIRAAALLEATIDFA-DEDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV   +  + ND+   I+     E IR+G+++ I+G  N GKS+L NALA +D A
Sbjct: 180 VDVSPEVTELVTSVTNDLEREITGVTTAERIRSGFEVAIVGAPNVGKSTLLNALAGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +++ GTTRDV+ + +DL G  V + DTAGIRETDDIVE  G++R     + ADL + L
Sbjct: 240 ITSEVAGTTRDVIEVRMDLGGLPVTLLDTAGIRETDDIVESIGVERALARAQAADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
             +            D I +  K+DL    ++   + IS  TG G+ +LI +I +ILS +
Sbjct: 300 --VTGGDTPDLNPEPDDIVLNAKADL----SDNPANGISGKTGLGVSDLIARITAILSKR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425
                 +     +      +      +A L E +   DI AE +R A  +L  + G VD+
Sbjct: 354 ASGAGLATRLRHKQAMERGRAALQSALALLPEGEDTADITAEEIRTAIRALDSLVGRVDI 413

Query: 426 EQLLDIIFSKFCIGK 440
           E +LD IF+ FC+GK
Sbjct: 414 ENILDEIFASFCLGK 428


>gi|193624724|ref|XP_001945984.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
           [Acyrthosiphon pisum]
          Length = 485

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 173/472 (36%), Positives = 271/472 (57%), Gaps = 36/472 (7%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKASLRYFFGLDGR- 59
           + +K TI+A+S+G     +++IR+SGP   + +      K  P PRKA L        + 
Sbjct: 17  SRQKSTIYALSSGLGKCGVAVIRVSGPCTSKAILNMTHLKYLPRPRKACLNKIIDPTTKE 76

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD GLL+ FP P+SFTGED  EF VHGG AVV  +L+ L+K+P+ R A+PGEF++R+F 
Sbjct: 77  QLDIGLLLWFPGPKSFTGEDCCEFQVHGGRAVVTSVLQGLSKLPDFRPADPGEFTKRSFY 136

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N K+DL E E LADLI ++TE+QR+ ++  + G L  LY  W   L    +++EA +DFS
Sbjct: 137 NNKMDLTEVEGLADLIEADTELQRKQALMQLEGSLRQLYDSWRQYLLENLAYVEAYIDFS 196

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +++++   + V  ++  L  +I  H+   + GE++R+G K+ I+G  N GKSSL N+L
Sbjct: 197 ETDNIEDLVLENVKENLEKLAKEIEMHLMDNRSGELLRDGVKVAIIGAPNTGKSSLLNSL 256

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVEN 298
             ++ AIVT++PGTTRD + + LD+ GY V + DTAGIR +T D++E  GIK++ ++ E+
Sbjct: 257 CSREAAIVTELPGTTRDPIQVPLDVSGYSVLLIDTAGIRSQTVDLIEGLGIKKSKVQAES 316

Query: 299 ADLILLLKEINSKKEISFPKNIDFIF------IGTKSDLYSTYTEEYDHLI--------- 343
           AD+++L+ +     ++    NID         +  + D    Y  + D+L          
Sbjct: 317 ADMVILVTDAQCLLDVD---NIDLWLKKHVENLKVQCDNCLVYVNKIDNLSDDQVIRLKK 373

Query: 344 ------------SSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRY 389
                       S    EGL +++   ++ L        F  P  S  RH Y L   +  
Sbjct: 374 VSQNSKWTLCFGSCKVNEGLMDMMRTFENCLQQLCGNPNFEHPRCSQARHRYCLLNALNN 433

Query: 390 LEM-ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++    ++E D  +D+ A++LR A++ +GKITG V  E++L  IFSKFCIGK
Sbjct: 434 VQTYLKISESDKNIDVAAQHLRKATLYVGKITGHVSTEEVLTEIFSKFCIGK 485


>gi|149605447|ref|XP_001518750.1| PREDICTED: similar to mitochondrial GTP-binding protein 1
           [Ornithorhynchus anatinus]
          Length = 494

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 180/467 (38%), Positives = 269/467 (57%), Gaps = 36/467 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYFFGLDG-RILD 62
           + TIFA+S+G     +++IR SGP S   +   + + + P PR A+L      D    LD
Sbjct: 33  RVTIFALSSGHGKCGVAVIRTSGPASGPALLRLMARLELPRPRTATLSLILDPDSSEPLD 92

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +GL++ FP P SFTGED AE HVHGG AVV+G+L+ L  +P LR A  GEF++RAF+NGK
Sbjct: 93  RGLVLWFPGPHSFTGEDCAELHVHGGPAVVSGVLQALGSLPGLRPAEAGEFTKRAFQNGK 152

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           + L E E L DLI +ETE QRR ++  ++GEL  LY  W + LT + + +EA +DFSE++
Sbjct: 153 LGLTEVEGLGDLIHAETEAQRRQALRQLAGELGRLYQGWSETLTRVLAHVEAYIDFSEDD 212

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +++     +V   +  L+ +I  H+   + GE +R+G ++VI G +NAGKSSL N L +K
Sbjct: 213 NIEEGVLADVNTSVRGLQAEIQGHLQDARRGERLRSGVQVVIAGPTNAGKSSLLNLLCQK 272

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             AIV+ + GTTRDV+   L++ G+ V +SDTAG+R T D VE+EG++R    +  AD++
Sbjct: 273 PTAIVSPVAGTTRDVVESALNIGGFPVLLSDTAGLRATQDPVEREGVRRAQDRLTQADIV 332

Query: 303 ---------------LLLKEINSKKEISFP-----KNIDFIFIGTKSDL---YSTYTEEY 339
                          L L+ +  + + + P        D +  G+   L   +  +    
Sbjct: 333 LAVLDATDIASDSSHLFLETMRGQGDPTRPCLLVLNKADLLTPGSHQGLVGIFQGWGLTP 392

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS-----HKRHLYH-LSQTVRYLEMA 393
             L+S  TGEG+E L++ +K  L+          PS     H+RHL+  L+   RY +  
Sbjct: 393 VLLMSCKTGEGVEGLLDALKEELAAICGDPAVGSPSLTQTRHRRHLHDCLAALGRYQQW- 451

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +E+D  L + AE LR A   LG+ITG V   ++LD+IF  FCIGK
Sbjct: 452 --HERD--LALAAEELRAARGHLGRITGRVGAAEILDVIFRDFCIGK 494


>gi|162147024|ref|YP_001601485.1| tRNA modification GTPase TrmE [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209544086|ref|YP_002276315.1| tRNA modification GTPase TrmE [Gluconacetobacter diazotrophicus PAl
           5]
 gi|226704782|sp|A9HE16|MNME_GLUDA RecName: Full=tRNA modification GTPase mnmE
 gi|161785601|emb|CAP55172.1| putative tRNA modification GTPase [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209531763|gb|ACI51700.1| tRNA modification GTPase TrmE [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 435

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 172/450 (38%), Positives = 263/450 (58%), Gaps = 25/450 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59
           M  E+  IFA++TGA  +AI+++RL+G  C  + + +C    P PR+ASLR  +  D   
Sbjct: 1   MPTEQMPIFALATGAGRAAIAVMRLTGAGCGDMLQRLCGPLPP-PRQASLRGLWRRDAAA 59

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              +LD+ L++ FP P S+TGEDSAE H+H G AV+ G+ + L  +   R A PGEF+RR
Sbjct: 60  APVLLDRALVLWFPGPRSYTGEDSAELHLHAGPAVIAGVADALVAL-GARPAEPGEFTRR 118

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF +G++DL+EAE +ADLI +ETE QRR +++   G LS +Y  W  +L  + +  EA +
Sbjct: 119 AFAHGRLDLIEAEGIADLIDAETEAQRRQALDQADGTLSRIYDGWAARLRTLLAHQEALI 178

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF +E D+     + +L+D+  L++++ +H+  G  GE +R G    I+G  N GKSSL 
Sbjct: 179 DFPDE-DLPPGVEQALLDDLTALRSEMQAHLDDGGRGEKLRRGLVFTIVGAPNVGKSSLL 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA +D AIV+ I GTTRD + I + L    V + DTAG+RET D +E EG++R    V
Sbjct: 238 NALAGRDAAIVSAIAGTTRDAIEIRVVLGDVPVTLIDTAGLRETQDEIEAEGVRRALFHV 297

Query: 297 ENADLILLLKEINSKKEISFPKNI--DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           ++AD ++ + +       + P +I  D I +  K DL           IS   G G++ L
Sbjct: 298 KHADCVIAMFDGE-----TVPDDIPADAIRVRNKVDLAPVPAGADAIGISVRQGTGMDAL 352

Query: 355 INKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
               ++ L+ + + L  S      +  RH   + +T  +L  A+L+      ++  E +R
Sbjct: 353 ----RTALAERARALTASAAGPPLTRARHRAAIEETAGHL-AAALDMH--WPEMRGEEMR 405

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  +LG++TG V VE LLD +F +FCIGK
Sbjct: 406 LAMRALGRLTGAVGVEDLLDTVFGQFCIGK 435


>gi|218529834|ref|YP_002420650.1| tRNA modification GTPase TrmE [Methylobacterium chloromethanicum
           CM4]
 gi|218522137|gb|ACK82722.1| tRNA modification GTPase TrmE [Methylobacterium chloromethanicum
           CM4]
          Length = 444

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 168/442 (38%), Positives = 262/442 (59%), Gaps = 4/442 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59
           +    +TIFA ++G   +A++++R+SGP+     + +   + P PR+ SLR     D R 
Sbjct: 5   LPQRDDTIFAPASGFGRAAVTVVRISGPAAGLALDRLAGGR-PEPRRLSLRRLRDPDSRD 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ L+   P P + TGED AE H+HGG+AV + +L  LA +P  R A  G FSRRAF 
Sbjct: 64  LLDQALVAWLPGPATATGEDMAELHLHGGLAVRSAVLRALAGVPGCRPAEAGAFSRRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL EAE +ADLI +ETE QR  ++  + G L      W +    + +  EA LDF+
Sbjct: 124 NGRIDLTEAEGIADLIDAETEAQRVQALRQLDGALGRQVAAWRETGIDLLAGAEAALDFA 183

Query: 180 EEEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E DV +      L+     L++ I + ++ G+ GE +R G+ +V+ G  NAGKS+L NA
Sbjct: 184 DEGDVDDADLDAALSGRATALRDAIRAALADGRRGERLREGFCVVLAGAPNAGKSTLLNA 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L+ +D AIV+DIPGTTRD + +  DL G  V + DTAG+RET D +E EG+KRT   + +
Sbjct: 244 LSGRDAAIVSDIPGTTRDAIDVRCDLGGLPVVLVDTAGLRETADAIEAEGVKRTQSRIRS 303

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           ADL+L L   + + +     ++  + + TK+DL      E    IS+ TG GL+ L++ I
Sbjct: 304 ADLVLHLVPADGEADAGRFADVPVLLVRTKTDLAPEGPGEGSLAISAVTGAGLDALLDAI 363

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           ++       +   ++ + +RH   LS+   +L+  +        +++AE+LRLA  +LG+
Sbjct: 364 QASAQTALGQ-GDALVTRERHREALSRAAAHLDRVATAAAGFPPELVAEDLRLAVRALGE 422

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           + G V VE++LD +F+ FCIGK
Sbjct: 423 VGGHVGVEEMLDRLFAGFCIGK 444


>gi|110677827|ref|YP_680834.1| tRNA modification GTPase TrmE [Roseobacter denitrificans OCh 114]
 gi|123362327|sp|Q16CZ5|MNME_ROSDO RecName: Full=tRNA modification GTPase mnmE
 gi|109453943|gb|ABG30148.1| tRNA modification GTPase TrmE, putative [Roseobacter denitrificans
           OCh 114]
          Length = 428

 Score =  295 bits (755), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 172/437 (39%), Positives = 258/437 (59%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +T+FA+ +    + +S+IRLSGP+ + V E IC    P PRK+++R     DG ++D+ L
Sbjct: 2   DTVFALGSAQGRAGVSVIRLSGPAAWAVAETICGSL-PDPRKSAVRVLRAQDGSVIDQAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +P SFTGED  EFHVHG IAVV  +L+ L+     RLA  GEF+RRA ENGK+DL
Sbjct: 61  VLAFKAPHSFTGEDVVEFHVHGSIAVVRTVLDALSDQDVARLAEAGEFTRRALENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QRR ++  ++G L      W  KL    + IEA +DF+ +EDV 
Sbjct: 121 SQVEGLADLIDAETEAQRRQAVRVLTGALGEKVEVWRSKLIRAAALIEATIDFA-DEDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV + +  + +D+ + ++   + E IR+G++I ++G  NAGKS+L N LA +D A
Sbjct: 180 VDVTPEVTSLLEDVSSDVRTEVAGTHVAERIRSGFEIALVGAPNAGKSTLLNKLAGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++I GTTRDV+ + +DL G  V   DTAG+R++ D +E  GI+R     + ADL + L
Sbjct: 240 ITSEIAGTTRDVIEVRMDLGGLPVTFLDTAGLRQSADEIETIGIERAIKRAQEADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
              + +  I  P   D I +  K DL           IS  TG+G+ EL+ KI+S+ S +
Sbjct: 300 SGPDERLLIE-PLE-DDIRLTPKVDLAPGSQTG----ISGKTGQGIPELLEKIRSVFSER 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCV 423
              +   + +H+RH   + + +  L+ +  +L       DI A+ LR A  +L  + G +
Sbjct: 354 VSAV--GLATHERHRLAMQRALEDLDNSFEALLRGPEFYDITAQELRSAIRALETLVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           D E LLD IFS FC+GK
Sbjct: 412 DAENLLDEIFSSFCLGK 428


>gi|58865408|ref|NP_001011919.1| tRNA modification GTPase GTPBP3, mitochondrial precursor [Rattus
           norvegicus]
 gi|81883253|sp|Q5PQQ1|GTPB3_RAT RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial;
           AltName: Full=GTP-binding protein 3; Flags: Precursor
 gi|56268874|gb|AAH87083.1| GTP binding protein 3 (mitochondrial) [Rattus norvegicus]
          Length = 492

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 176/461 (38%), Positives = 255/461 (55%), Gaps = 30/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64
           TIFA+S+G    AI++IR SGP+       +   ++P P R A LR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALREPPPARSACLRLLRHPCSGEPLDRS 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  E HVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCMELHVHGGPAVVSGVLQALGSVPGLRPAKAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GELS L   W   LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++V  D+  L+  +SSH+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQVDRDVRALEVALSSHLRDARRGQRLRSGANVVVAGPPNAGKSSLVNLLSQKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRD+L   +DL G+ V +SDTAG+RE    VE+EG++R    +E AD+IL 
Sbjct: 275 SIVSPEPGTTRDILETPVDLAGFPVLLSDTAGLREGAGAVEQEGVRRARQRLEQADIILG 334

Query: 305 L---KEINSKKEISFPKNIDFIFIGTKSD-------------------LYSTYTEEYDH- 341
           +    ++ S    SF   +    +    D                     ++ T    H 
Sbjct: 335 MLDASDLASSSSCSFLDTVVAPLVAQSHDSGRQRLLLLLNKSDLLSANAPASSTALPPHL 394

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKD 399
           L+S  TG G++ L+  +K+ L+          P  +  RH YHL   +  L    L    
Sbjct: 395 LLSCHTGAGMDALLQALKTELAAVCGDPSTGPPLLTRARHQYHLQGCLDALGRFQLTTD- 453

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + AE LR A   L  +TG    E++LD+IF  FC+GK
Sbjct: 454 --LALAAEALRQARRQLSHLTGGGGTEEILDLIFQDFCVGK 492


>gi|260797062|ref|XP_002593523.1| hypothetical protein BRAFLDRAFT_125232 [Branchiostoma floridae]
 gi|229278748|gb|EEN49534.1| hypothetical protein BRAFLDRAFT_125232 [Branchiostoma floridae]
          Length = 517

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 181/491 (36%), Positives = 270/491 (54%), Gaps = 59/491 (12%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGRILDKGL 65
           TIFA+S+G     ++++R++GP        + ++   P  R+A+L+  +   G  LD+GL
Sbjct: 29  TIFALSSGHGKCGVAVVRVTGPHASSAVRLLTRRPVLPAVRRAALKRLYDSTGEPLDRGL 88

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I FP P SFTGEDS EFHVHGG +VV  +L+ L  M  LR A  GEF++RAF+NGK+DL
Sbjct: 89  VIWFPGPHSFTGEDSCEFHVHGGPSVVTSLLQALGNMEGLRPAEAGEFTKRAFQNGKLDL 148

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E LADLI +ETE QR+ ++  M G+LS LY  W  +L    + +EA +DFSE+E+++
Sbjct: 149 TEVEGLADLIHAETEAQRKQALRQMEGDLSRLYSDWSRRLLKCVANVEAYIDFSEDENIE 208

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                +V  ++  L+ ++  H+S G+ GE +R+G ++ ILG  N GKSSL NA+ ++  A
Sbjct: 209 AGVLDDVEREVCQLREELERHLSDGRRGERLRSGVQVAILGKPNVGKSSLLNAVCQRPAA 268

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL-ILL 304
           IVT + GTTRDV+   ++L GY V +SDTAG+RET+DIVE+EG++R     + AD+ +L+
Sbjct: 269 IVTPVAGTTRDVVESAVNLGGYPVLLSDTAGLRETEDIVEQEGVRRARQRAQQADISVLV 328

Query: 305 LKEINSKKEIS--------------------------FPKN-------IDFIFIGTKSDL 331
           L   +    +S                          F  N         ++ +  KSDL
Sbjct: 329 LDATDVMAAVSRQPGHYLTLQQYVQDHIPDLGLQGTTFDTNDGTTNPTDSYLIVVNKSDL 388

Query: 332 Y------------STYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                        S    E D        ++S  TGEG++  +  ++  +          
Sbjct: 389 VDAGGSLGTLLASSELATEGDGARDGDVCVMSCLTGEGMDGFLQLLQLKVKLMCGNPLAG 448

Query: 373 IPS--HKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLL 429
            PS    RH  HL+  ++ L   A + E+D  L + AE LR     LGKITG +  E++L
Sbjct: 449 NPSFTQARHRAHLTACLQALTSYAGMCERD--LVLAAEELRTGLRHLGKITGKMGAEEIL 506

Query: 430 DIIFSKFCIGK 440
           D+IF  FCIGK
Sbjct: 507 DVIFRDFCIGK 517


>gi|321474525|gb|EFX85490.1| hypothetical protein DAPPUDRAFT_300302 [Daphnia pulex]
          Length = 496

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 178/467 (38%), Positives = 266/467 (56%), Gaps = 33/467 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP--FPRKASL-RYFFGLDGRIL 61
           + TIFA+S+G   SAI++IR+SGP    V   + ++KK    PRKA L R     +  +L
Sbjct: 32  RSTIFALSSGLSKSAIAVIRISGPKSLDVIHRMTRRKKDSVIPRKALLCRIVDPKNEEML 91

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D GL++ FP P SFTGEDS E HVHGG+AVV+ ++  L K+P  RLA  GEF++RA+  G
Sbjct: 92  DNGLVLWFPQPHSFTGEDSVELHVHGGVAVVSSVINALHKLPGFRLAEAGEFTKRAYLAG 151

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+D  E E LADL+ +ETE QRR ++   +GEL+ LY  W  ++    + +EA +DF E+
Sbjct: 152 KLDATEVEGLADLLRAETETQRRQAIRQATGELAGLYNLWRTRVLTCMAHLEAFIDFGED 211

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +D+       + + +  LK ++ SH++  + GE +R+G K+ I+G  NAGKSSL N L +
Sbjct: 212 QDIGEEVLGTLRDSVQSLKAEVDSHLNDNRRGERLRSGVKVAIIGEPNAGKSSLINILGR 271

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++VAIV+   GTTRDVL I LD+ G+ V I DTAG+R + D VE EG++R       ADL
Sbjct: 272 RNVAIVSPHAGTTRDVLEISLDIGGFPVVICDTAGLRHSVDPVENEGLRRAREAAATADL 331

Query: 302 ILLLKEINSKKE-------------------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
           ++++ + +   E                   +SF    +++ +  K DL S        L
Sbjct: 332 VIIVMDASRGPESLWQQPVKDLIRHECQRLNLSFSAENNYLVLLNKLDLVSPNVNRPPEL 391

Query: 343 --ISSFTGEGLEELI----NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASL 395
             IS  T +GL E +     K+  + +N  ++ P    S +RH  H+     +LE    +
Sbjct: 392 SAISCKTEKGLGEFLVHLEGKLAELCANPLQESPLITSSRQRH--HVQLAFWHLEKFLDI 449

Query: 396 NEKDCGLDIIAENLRLASVSLGKIT--GCVDVEQLLDIIFSKFCIGK 440
            E    L +  E LR ++  LG IT  G +D E++LD++F  FCIGK
Sbjct: 450 VEHQGDLALAGEYLRRSANQLGSITARGKIDTEEMLDVLFRSFCIGK 496


>gi|188580912|ref|YP_001924357.1| tRNA modification GTPase TrmE [Methylobacterium populi BJ001]
 gi|205415780|sp|B1ZGG9|MNME_METPB RecName: Full=tRNA modification GTPase mnmE
 gi|179344410|gb|ACB79822.1| tRNA modification GTPase TrmE [Methylobacterium populi BJ001]
          Length = 444

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 165/440 (37%), Positives = 252/440 (57%), Gaps = 8/440 (1%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRIL 61
           +ETIFA ++G   +A++++R+SGP+     + +   +   P    L      D   G IL
Sbjct: 9   EETIFAPASGFGRAAVAVVRVSGPAAGPALDQLAGGR---PEPRRLSLRRLRDPGTGNIL 65

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+   P P + TGED AE H+HGG+AV   +L  L ++P  R A  G FSRRAF NG
Sbjct: 66  DQALVAWLPGPATATGEDMAELHLHGGLAVRAAVLRALGRVPGCRPAEAGAFSRRAFLNG 125

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL EAE +ADLI +ETE QR  ++  + G L      W +    + +  EA LDF++E
Sbjct: 126 RIDLTEAEGIADLIDAETEAQRVQALRQLDGALGRQVAAWRETGIELLAGAEAALDFADE 185

Query: 182 EDVQNFSSKEVLNDILFLKND-ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            DV        L        D I + ++ G+ GE +R G+ +V+ G  NAGKS+L NAL+
Sbjct: 186 GDVDEDGLDAALAGRAAALRDAIRAALADGRRGERLREGFCVVLAGAPNAGKSTLLNALS 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIV+DIPGTTRD + +  DL G  V + DTAG+RET D++E EG++RT   + +AD
Sbjct: 246 GRDAAIVSDIPGTTRDAIEVRCDLGGLPVVLVDTAGLRETADVIEAEGVRRTHHRIRSAD 305

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           L+L L   + +        +  + + TKSDL S    E    +S+ TG GL+ L++ I+ 
Sbjct: 306 LVLHLVPADGEAGPEDFAEVPVLRVRTKSDLPSGAPGEGGLAVSAVTGAGLDALLDAIQG 365

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
             ++       ++ + +RH   LS+   +L+  +        +++AE+LRLA  +LG++ 
Sbjct: 366 SAASALGG-GDALVTRERHREALSRAAGHLDRVATAPAGFPPELVAEDLRLAVRALGEVG 424

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G V VE++LD +F+ FCIGK
Sbjct: 425 GHVGVEEMLDRLFAGFCIGK 444


>gi|296233234|ref|XP_002761924.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 1
           [Callithrix jacchus]
          Length = 492

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 177/464 (38%), Positives = 260/464 (56%), Gaps = 36/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     +++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGVAVIRTSGPASGHALRILTAPRDLPPARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L  L  +P LR A  GEF+RRAF +GK++
Sbjct: 95  LVLWFPGPKSFTGEDCVEFHVHGGPAVVSGVLRALGSVPGLRPAEAGEFTRRAFAHGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQANIEVRALEVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R    +E ADLIL 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 334

Query: 305 LKEINSKKEISFPKNIDFI--------------------FIGTKSDLYSTYTEEYDH--- 341
           + + +   +++ P + +F+                     +  KSDL ST          
Sbjct: 335 MLDAS---DLASPSSCNFLATVVASAGAQSRSSSSQRLLLVLNKSDLLSTEGPGPGPDMP 391

Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLN 396
              L+S  TGEGL+ L+  +K  L+          P  +  RH +HL   +  L      
Sbjct: 392 PHLLLSCVTGEGLDGLLEALKMELAAVCGDPSTGPPLLTRARHQHHLQGCLDALGHYK-Q 450

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            KD  L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 451 SKD--LALAAEALRVARGHLTRLTGGGGTEEILDIIFRDFCVGK 492


>gi|119605004|gb|EAW84598.1| GTP binding protein 3 (mitochondrial), isoform CRA_b [Homo sapiens]
          Length = 497

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 177/469 (37%), Positives = 260/469 (55%), Gaps = 41/469 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR-----SFIEADLDFS 179
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT        + +EA +DF 
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKASPPFALAHVEAYIDFG 214

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+++++    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L
Sbjct: 215 EDDNLEEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLL 274

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           ++K V+IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R    +E A
Sbjct: 275 SRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQA 334

Query: 300 DLILLLKEINSKKEISFPKNIDF--------------------IFIGTKSDLYSTYTEEY 339
           DLIL + + +   +++ P + +F                    + +  KSDL S      
Sbjct: 335 DLILAMLDAS---DLASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGP 391

Query: 340 DH------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLE 391
                   L+S  TGEGL+ L+  ++  L+          P  +  RH +HL   +  L 
Sbjct: 392 GPDLPPHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALG 451

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 KD  L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 452 HYK-QSKD--LALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 497


>gi|170058589|ref|XP_001864986.1| tRNA modification GTPase GTPBP3, mitochondrial [Culex
           quinquefasciatus]
 gi|167877662|gb|EDS41045.1| tRNA modification GTPase GTPBP3, mitochondrial [Culex
           quinquefasciatus]
          Length = 490

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 184/480 (38%), Positives = 270/480 (56%), Gaps = 52/480 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILD 62
           + TIF +S+G+    +++IR+SG +   V        K P  R+A LR         ++D
Sbjct: 19  RGTIFGLSSGSGKCGVAVIRVSGDASSDVVHRKTSSNKLPAARQAVLRRIVHSRTAEMID 78

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +GL++ FP P SFTGED  EFHVHGG AVV+ + + L  +  +RLA PGEF++RAF  GK
Sbjct: 79  RGLVLWFPGPHSFTGEDCVEFHVHGGAAVVSAMYDSLGSIDGVRLAEPGEFTKRAFYAGK 138

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL E E LADLI +ETE QR+ ++   SGELS LY +   +L    + +EA +DF+E++
Sbjct: 139 MDLTEVEGLADLIEAETEAQRKQALLQASGELSKLYNEMRSRLVRCIANVEAYIDFAEDQ 198

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV +   + V  D+  L  DIS+H++  + GE +R G +  I+G  N GKSS  N L+ +
Sbjct: 199 DVDDTVLQSVGEDVATLVRDISTHLNDHRRGERLRAGVRTAIIGAPNVGKSSFVNLLSNR 258

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADL 301
            V+IVT++ GTTRD++    D+ GY V ++DTAG+R  TDDIVE EGI R     + ADL
Sbjct: 259 KVSIVTNVAGTTRDIIESHHDIGGYPVILADTAGLRASTDDIVEIEGISRAKDYFQLADL 318

Query: 302 ILLLKEINSKKEISFPKNIDF------------------------IFIGTKSDLY-STYT 336
           ++L+  I+S+    + +N D                         + I  K DL   ++ 
Sbjct: 319 LILM--IDSEDLQRYLQNGDTFDCFLSHYLTSLGINREALSTAKSMLIVNKCDLLPESFL 376

Query: 337 EEYDH-----LISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
           E         L+S  T  GLE    E+   +K +  N  K+ P    S +RH YHL Q V
Sbjct: 377 EPIKKIPNITLLSCHTQAGLEAVLQEITTNLKHLCGNPSKESPN--LSQQRHRYHLKQCV 434

Query: 388 -------RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                  RY+E     +++  L I  ++LR A+  +GKITG ++ E++LD+IFS FCIGK
Sbjct: 435 DCLEKYQRYVE----GQRNPDLAIATQHLRNATRCIGKITGAIETEEILDVIFSTFCIGK 490


>gi|260431964|ref|ZP_05785935.1| tRNA modification GTPase TrmE [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415792|gb|EEX09051.1| tRNA modification GTPase TrmE [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 428

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 179/439 (40%), Positives = 248/439 (56%), Gaps = 16/439 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    + +++IRLSGP   +    +     P  R   +R F   DG  LD GL
Sbjct: 2   DTIFALASAQGKAGVAVIRLSGPLAHRAAAELSGGDLP-ARGMRVREFRAPDGSRLDDGL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED AE  +HG  A VN +L  LA M  LR+A PGEF+RRA ENGK+DL
Sbjct: 61  VLTFQGPASFTGEDVAELQIHGSTAAVNAVLRTLADMDGLRIAEPGEFTRRALENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ +   ++GEL  L  +W   L    S +EA +DF++EE V 
Sbjct: 121 AQVEGLADLIDAETEAQRKQAQTILAGELGDLAERWRRDLIRAASLLEAVIDFADEE-VP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV   I  +  D+       K+ E IRNG+++ I+G  NAGKS+L NALA ++ A
Sbjct: 180 TDVTPEVRQLIAGVMTDLDRESRGVKIAERIRNGFEVAIVGPPNAGKSTLLNALAGREAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRDV+ + +DL G  V + DTAG+RET D VE  GI       E ADL + L
Sbjct: 240 ITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETGDHVENLGIALARERAEKADLRVFL 299

Query: 306 KEINSKKEISF-PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            E   +  ISF P +I  +    KSDL +      +  +S  TG+G++ LIN+I  +L  
Sbjct: 300 TEDPDQLGISFQPGDIHVL---PKSDLRAA----SETGVSGKTGQGIDRLINQISRVLME 352

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDIIAENLRLASVSLGKITG 421
           +       I + +RH   + +    L   SL   + G    DI AE LR A  +L  + G
Sbjct: 353 RTAS--SGIATRERHRSAMQRASAAL-TDSLKVLESGPDLYDIAAEELRTAIRALESLVG 409

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            VDVE LLD IF+ FC+GK
Sbjct: 410 RVDVENLLDEIFASFCLGK 428


>gi|226952825|ref|ZP_03823289.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Acinetobacter sp. ATCC 27244]
 gi|226836446|gb|EEH68829.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Acinetobacter sp. ATCC 27244]
          Length = 454

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 171/457 (37%), Positives = 266/457 (58%), Gaps = 23/457 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M H+  TI A++T      + +IRLSGP  + + + + +K+ P  R A+ R F+ +D  +
Sbjct: 4   MQHQT-TIAAIATPLGRGGVGVIRLSGPKAYMIAKELTQKQLPTARMAAFRQFYDVDNSV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+++ FP+P SFTGED  E   HGG  + N +L  L  +     A  GEFS RAFEN
Sbjct: 63  MDEGIILCFPNPHSFTGEDVVEIQGHGGPVIQNALLARLLDL-GATAAKAGEFSMRAFEN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF E
Sbjct: 122 GKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +  ++L  +  +++ + +     + G+++R G ++VI G  NAGKSSL NALA
Sbjct: 182 EE-IDFLADGKILALLDDVQDSVKAVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VE+EGI+R   E+E AD
Sbjct: 241 GHERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEREGIRRAIKEIEQAD 300

Query: 301 LILLLKEINSKKEI------SFPKNID---FIFIGTKSDLYSTYTEEYDHL------ISS 345
           L+LL+ ++N   E        F  +++    + IG K DL     E  D+       +S+
Sbjct: 301 LLLLVYDLNQGDEPLQLAHEYFADHLEPKRLLLIGNKCDLTGQPAEMTDYQGFRHIRVSA 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403
               G++ LI+ I +     F+    +  +  RHL  + +T RYL  A   L   + G +
Sbjct: 361 KQDMGVQALIDAITA--HAGFQPEEDTFIARTRHLDAMKRTQRYLAEAREQLVVFNAG-E 417

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 418 LVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|190571401|ref|YP_001975759.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018799|ref|ZP_03334607.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|226704787|sp|B3CMJ7|MNME_WOLPP RecName: Full=tRNA modification GTPase mnmE
 gi|190357673|emb|CAQ55117.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995750|gb|EEB56390.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 442

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 178/449 (39%), Positives = 266/449 (59%), Gaps = 16/449 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M +  ETIFA+ST    S +++IR+SG    +       KKK  PR A+L   +    ++
Sbjct: 1   MTNTNETIFALSTVFGKSGVAVIRISGNYTLKALNHFHIKKKIKPRFATLVDLYDDSNQL 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G++I FP+P SFTGED  E  VHG  AV+  ILE+L+K+    +A PGEFS RAF N
Sbjct: 61  IDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEKLSKI--FVMARPGEFSLRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK DL + E +ADLI +ET+MQ + +++ +SGEL  LY  W  +L  I+S IEA +DF E
Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   +    +++ N++  L   I  H++  + GE +R G  IVI G  N GKS+LFN LA
Sbjct: 179 DIWAEKSELEKINNEVQSLVQLIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K+D+AIV++  GTTRD+L   +D+ GY + +SDTAGIRE+ D +E EGI R       AD
Sbjct: 239 KRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIESEGISRAKKRSFEAD 298

Query: 301 LILLLKEINSKKEISFP-KNIDFIFIGTKSD----LYSTYTEEYDHL-ISSFTGEGLEEL 354
           L + L     +  I+    N D I++ +K+D      +      D L IS   G G  +L
Sbjct: 299 LRIELFPFEQRHNINCNVVNSDTIYVLSKADDAINDRNILIGGVDFLPISILKGIGTNKL 358

Query: 355 INKIKSILSNKF---KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           I+ IK     KF   +  P  + + +RH  H+ + + +L+   +   D  +++I+E+LRL
Sbjct: 359 ISLIKKKAEEKFGHDRDTP--VITRQRHRSHMQKALEHLQRFKI---DNPIELISEDLRL 413

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A+  LG + G ++VE++LD +FS FC+GK
Sbjct: 414 AAFELGAVIGIINVEEILDSVFSSFCVGK 442


>gi|297466925|ref|XP_002704761.1| PREDICTED: GTP binding protein 3 (mitochondrial) [Bos taurus]
 gi|297476307|ref|XP_002688589.1| PREDICTED: GTP binding protein 3 (mitochondrial) [Bos taurus]
 gi|296486094|gb|DAA28207.1| GTP binding protein 3 (mitochondrial) [Bos taurus]
          Length = 470

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 172/442 (38%), Positives = 252/442 (57%), Gaps = 14/442 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGP+     + +   +  P  RKA LR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALQSLTAPRDLPLARKACLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DFSE++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGDLCRGWAETLTKALAHVEAYIDFSEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +     +  +++  L+  +  H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLDQADSEVRKLEVALGVHLRDARRGQRLRSGAHVVVAGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+   +SDTAG+RE    VE+EG++R        D +++
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGVGPVEQEGVRRAQKSCNFLDTVVI 334

Query: 305 LKEI----NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                    S++ +    N   +    +SDL+         L+S  TGEGL+ L+  +K 
Sbjct: 335 PAGARNPNGSRQRLLLVLNKSDLLPAGRSDLHPDLPSHL--LLSCLTGEGLDGLLEALKK 392

Query: 361 ILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
            L+      P + P  +  RH +HL   +  L       KD  L + AE LR+A   L  
Sbjct: 393 ELAALCGD-PSTGPLLTRSRHQHHLRGCLDALGQYK-QAKD--LALAAEALRVARGHLSH 448

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           +TG    E++LDIIF  FC+GK
Sbjct: 449 LTGGGGTEEILDIIFRDFCVGK 470


>gi|91974909|ref|YP_567568.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris BisB5]
 gi|91681365|gb|ABE37667.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris BisB5]
          Length = 462

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 175/464 (37%), Positives = 253/464 (54%), Gaps = 28/464 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA++TG LPSAI+++R+SGP    +   +     P PR A        +  +
Sbjct: 3   MHPSDQTIFALATGQLPSAIAMVRVSGPRAGDLLTALTGSLPP-PRTARRVLIRDQNQDL 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F  P S TGED AEFH+HGG AV+  ++  L+    +R A PGEF+RRAFEN
Sbjct: 62  IDDGVALWFAGPASATGEDVAEFHIHGGRAVLAALVRALSAFDGVRPAEPGEFTRRAFEN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++TE QRR ++  + G L     +W  ++    + IEA +DF++
Sbjct: 122 GKLDLTEAEGLDDLIHADTEAQRRQAVRQLGGLLGDRARRWRAQIIEATALIEAGIDFAD 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DVQ       L  I  L ++I+  ++     E +R+G  + I G  N GKS+L N LA
Sbjct: 182 EGDVQGELMAPALQTIAALHDEIAEVLAAQGRSERLRDGMVVAIAGPPNVGKSTLINRLA 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRDV+ + LDL GY V + DTAGIRE++D VE+EG++R       AD
Sbjct: 242 RREVAIVSPHAGTTRDVIEVQLDLGGYPVTVIDTAGIRESNDPVEQEGVRRARARAAEAD 301

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLY------------------------STYT 336
           L+L L E     + +   +     +  K DL                           + 
Sbjct: 302 LVLWLGEGEMTGD-AVAASAPVWRVRNKIDLRGGEGDGGPVGLPVEPLAAALRQTDGAWG 360

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                 IS+  G+GL ELI  I+   +  F     ++ S  RH   L      L+  SL 
Sbjct: 361 GNAAFEISALRGQGLGELIAAIEDFAAQYFASGETALISRARHRTLLQDAAAMLQR-SL- 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + D   +++AE LRLA V+LG++ G VDVE +L  IFS+FCIGK
Sbjct: 419 QHDLPAELVAEELRLAGVALGRLLGRVDVEDVLGEIFSRFCIGK 462


>gi|205422245|sp|Q13E22|MNME_RHOPS RecName: Full=tRNA modification GTPase mnmE
          Length = 460

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 175/464 (37%), Positives = 253/464 (54%), Gaps = 28/464 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA++TG LPSAI+++R+SGP    +   +     P PR A        +  +
Sbjct: 1   MHPSDQTIFALATGQLPSAIAMVRVSGPRAGDLLTALTGSLPP-PRTARRVLIRDQNQDL 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F  P S TGED AEFH+HGG AV+  ++  L+    +R A PGEF+RRAFEN
Sbjct: 60  IDDGVALWFAGPASATGEDVAEFHIHGGRAVLAALVRALSAFDGVRPAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++TE QRR ++  + G L     +W  ++    + IEA +DF++
Sbjct: 120 GKLDLTEAEGLDDLIHADTEAQRRQAVRQLGGLLGDRARRWRAQIIEATALIEAGIDFAD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DVQ       L  I  L ++I+  ++     E +R+G  + I G  N GKS+L N LA
Sbjct: 180 EGDVQGELMAPALQTIAALHDEIAEVLAAQGRSERLRDGMVVAIAGPPNVGKSTLINRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRDV+ + LDL GY V + DTAGIRE++D VE+EG++R       AD
Sbjct: 240 RREVAIVSPHAGTTRDVIEVQLDLGGYPVTVIDTAGIRESNDPVEQEGVRRARARAAEAD 299

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLY------------------------STYT 336
           L+L L E     + +   +     +  K DL                           + 
Sbjct: 300 LVLWLGEGEMTGD-AVAASAPVWRVRNKIDLRGGEGDGGPVGLPVEPLAAALRQTDGAWG 358

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                 IS+  G+GL ELI  I+   +  F     ++ S  RH   L      L+  SL 
Sbjct: 359 GNAAFEISALRGQGLGELIAAIEDFAAQYFASGETALISRARHRTLLQDAAAMLQR-SL- 416

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + D   +++AE LRLA V+LG++ G VDVE +L  IFS+FCIGK
Sbjct: 417 QHDLPAELVAEELRLAGVALGRLLGRVDVEDVLGEIFSRFCIGK 460


>gi|225630647|ref|YP_002727438.1| tRNA modification GTPase [Wolbachia sp. wRi]
 gi|254811498|sp|C0R405|MNME_WOLWR RecName: Full=tRNA modification GTPase mnmE
 gi|225592628|gb|ACN95647.1| tRNA modification GTPase [Wolbachia sp. wRi]
          Length = 442

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 175/449 (38%), Positives = 269/449 (59%), Gaps = 16/449 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M +  ETIFA+ST    S +++IR+SG    +       KK+  PR A+L   +    ++
Sbjct: 1   MTNTNETIFALSTVFGKSGVAVIRISGNYALKALNHFHIKKEIKPRFATLVDLYDDSSQL 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G++I FP+P SFTGED  E  VHG  AV+  ILEEL+K+    +A PGEFS RAF N
Sbjct: 61  IDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEELSKV--FVMAKPGEFSLRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK DL + E +ADLI +ET+MQ + +++ +SGEL  LY  W  +L  I+S IEA +DF E
Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   +    +++ N++  L   I  H++  + GE +R G  IVI G  N GKS+LFN LA
Sbjct: 179 DIWAEKSELEKINNEVQSLVRLIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K+D+AIV++  GTTRD+L   +D+ GY + +SDTAGIRE+ D +E EGI R       AD
Sbjct: 239 KRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIELEGISRAKKRSFEAD 298

Query: 301 LILLLKEINSKKEISFP-KNIDFIFIGTKS-DLYSTYTEEYDHL----ISSFTGEGLEEL 354
           L + L     +  I+    N D I++ +K+ D+ + +  + + +    +S   G G  +L
Sbjct: 299 LRIELFPFEQRPNINCNVVNSDTIYVLSKADDVINNHDIKINGIDLLPVSILKGIGTNKL 358

Query: 355 INKIKSILSNKF---KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           I+ IK     KF   +  P  + + +RH  H+ + + +L+  ++   D  +++I+E+LRL
Sbjct: 359 ISLIKEKAEEKFGHDRDTP--VITRQRHRNHMQKALEHLQRFNI---DNPIELISEDLRL 413

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A+  LG + G +DVE++L  +FS FC+GK
Sbjct: 414 AAFELGAVIGIIDVEEILSSVFSNFCVGK 442


>gi|169634938|ref|YP_001708674.1| tRNA modification GTPase TrmE [Acinetobacter baumannii SDF]
 gi|169153730|emb|CAP02931.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Acinetobacter baumannii]
          Length = 454

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 5   HSQTTIAAIATPPGRGGVGVIRLSGPKAYNIAQKLTQKNLPEARMAGFRKFYDTDGSIMD 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAFENGK
Sbjct: 65  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GANAAKAGEFSMRAFENGK 123

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF EEE
Sbjct: 124 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 183

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 184 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 242

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VEKEGI+R   E+E ADL+
Sbjct: 243 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 302

Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348
           LL+ ++N         +  F ++I+    + IG K DL     E  D     H+  S   
Sbjct: 303 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 362

Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           E G++ L++ I +     F     +  +  RHL  +++T  YL  A   L   + G +++
Sbjct: 363 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMTRTQLYLAEAREQLVVFNAG-ELV 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 420 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|170750474|ref|YP_001756734.1| tRNA modification GTPase TrmE [Methylobacterium radiotolerans JCM
           2831]
 gi|205415796|sp|B1M0E0|MNME_METRJ RecName: Full=tRNA modification GTPase mnmE
 gi|170656996|gb|ACB26051.1| tRNA modification GTPase TrmE [Methylobacterium radiotolerans JCM
           2831]
          Length = 441

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 173/446 (38%), Positives = 265/446 (59%), Gaps = 11/446 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-LDGR 59
           MN E +T+FA ++G   +A+++IR+SGP+   V   +   + P PR+ SLR      DG 
Sbjct: 1   MN-ETDTLFAPASGFGRAAVAVIRISGPAAGGVLATL-GGRLPTPRRLSLRSLRDPRDGT 58

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+ L+  FP P++++GED AE H+HGG AV   +L  LA++P  R A PG F+RRA  
Sbjct: 59  ELDRALVAWFPGPDTYSGEDMAELHLHGGAAVRMRVLATLARLPGCRAAEPGAFTRRAVL 118

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL EAE++ADLI +ETE QRR ++  + G LS     W  +     +  EA LDF+
Sbjct: 119 NGRMDLAEAEAVADLIDAETEGQRRQALRQLDGALSRQVAAWRAEAIDCLAAAEAALDFA 178

Query: 180 EEEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E DV +      L D    L++ +++ +  G  GE +R G+ +V+ G  N+GKS+L NA
Sbjct: 179 DEGDVDDAGLDAALFDRAARLRDAVAATLRDGHRGERLREGFTVVLAGAPNSGKSTLLNA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L+++DVAIV+D PGTTRD + + LDL G  V + DTAG+RET + +E +GI RT   ++ 
Sbjct: 239 LSRRDVAIVSDSPGTTRDAIEVRLDLGGLPVLLVDTAGLRETAEPIEAQGIVRTRARIDT 298

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHLISSFTGEGLEELI 355
           ADL++ L           P     + + TK+DL++      +  D  +S+ TG G+++L+
Sbjct: 299 ADLVVALVPPGGAVPDLGPGCRPILIVRTKADLFAGSQPAGDSADVTVSAHTGAGMDDLL 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAENLRLASV 414
           + I++   +        I +  RH   L   V +L+  S +    GL ++ AE+LRLA  
Sbjct: 359 DAIQAAAEDGLGTGDALI-TRARHRAALEACVAHLDRVSGSAG--GLPELAAEDLRLAVR 415

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LG++ G V VE +LD +FS FCIGK
Sbjct: 416 ALGEVAGHVGVEDVLDRLFSGFCIGK 441


>gi|332873302|ref|ZP_08441257.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6014059]
 gi|332738508|gb|EGJ69380.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6014059]
          Length = 451

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 174/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 2   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF EEE
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348
           LL+ ++N         +  F ++I+    + IG K DL     E  D     H+  S   
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359

Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           E G++ L++ I  I    F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVDAI--IAHAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|294648709|ref|ZP_06726169.1| tRNA modification GTPase TrmE family protein [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292825384|gb|EFF84127.1| tRNA modification GTPase TrmE family protein [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 454

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 171/457 (37%), Positives = 265/457 (57%), Gaps = 23/457 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M H+  TI A++T      + +IRLSG   + + E + +K+ P  R A+ R F+ +D  +
Sbjct: 4   MQHQT-TIAAIATPLGRGGVGVIRLSGSKAYMIAEQLTQKQLPNARMAAFRQFYDVDNSV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+++ FP+P SFTGED  E   HGG  + N +L  L  +     A  GEFS RAFEN
Sbjct: 63  MDEGIILCFPNPHSFTGEDVVEIQGHGGPVIQNALLARLLDL-GATAAKAGEFSMRAFEN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF E
Sbjct: 122 GKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +  ++L  +  +++ + +     + G+++R G ++VI G  NAGKSSL NALA
Sbjct: 182 EE-IDFLADGKILALLDDVQDSVKAVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VE+EGI+R   E+E AD
Sbjct: 241 GHERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEREGIRRAIKEIEQAD 300

Query: 301 LILLLKEINSKKEI------SFPKNID---FIFIGTKSDLYSTYTEEYDHL------ISS 345
           L+LL+ ++N   E        F  +++    + IG K DL     E  D+       +S+
Sbjct: 301 LLLLVYDLNQGDEPLQLAHEYFADHLEPKRLLLIGNKCDLTGQPAEMTDYQGFRHIRVSA 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403
               G++ LI+ I +     F+    +  +  RHL  + +T RYL  A   L   + G +
Sbjct: 361 KQDMGVQALIDAITA--HAGFQPEEDTFIARTRHLDAMKRTQRYLSEAREQLVVFNAG-E 417

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 418 LVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|75674297|ref|YP_316718.1| tRNA modification GTPase TrmE [Nitrobacter winogradskyi Nb-255]
 gi|123614357|sp|Q3SWH5|MNME_NITWN RecName: Full=tRNA modification GTPase mnmE
 gi|74419167|gb|ABA03366.1| tRNA modification GTPase trmE [Nitrobacter winogradskyi Nb-255]
          Length = 456

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 171/464 (36%), Positives = 259/464 (55%), Gaps = 32/464 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  ++TIFA+S+G  PSAI+++R SG         +     P  R A         G  
Sbjct: 1   MHPREQTIFALSSGRPPSAIAVVRASGSQAGTALRKLAGAI-PAARTAKRVLLRDSVGEA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ FP+P S TGED AEFHVHG  AVVN ++  L+ + + R A PGEF+RRAFEN
Sbjct: 60  IDDAVILWFPAPASATGEDIAEFHVHGSRAVVNALIAALSSIDDARAAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL EAE L DLI ++T+ QRR ++  + G L      W  +L    + IEA +DF++
Sbjct: 120 GKIDLTEAEGLDDLIHADTDRQRRQALRQLQGLLGDRARGWRKELIDASALIEAGIDFAD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EEDV    ++  L  I  L+ +I   ++    GE +R+G  + I G  NAGKS+L N LA
Sbjct: 180 EEDVPEDLARPALEKIAQLRREIEQTLAASARGERLRDGLTVAIAGPPNAGKSTLLNRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIV+   GTTRD++ + LDL+GY V + DTAGIRETDD VE+EG++R    V  AD
Sbjct: 240 RREAAIVSPHAGTTRDIIEVYLDLDGYPVTLIDTAGIRETDDPVEQEGVRRARDRVAKAD 299

Query: 301 LILLLKE-------------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEE--- 338
           L+L L +                   I +K +++ P+N      G K   + T   +   
Sbjct: 300 LVLWLSDDHGGEPDQTIRSGETSLWLIRNKIDLAGPEN-----DGAKPGRFETKAGQSAP 354

Query: 339 -YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLN 396
            +   IS+  G+G+++L++ + +            + +  RH   L   V  L  A +L 
Sbjct: 355 PWRFRISASRGDGVDDLVSALTAFAEKLLGSSEAGVITRLRHRNILRDAVASLAKAETLA 414

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  G +++AE LR+A   +G++ G VD++ +LD +F +FCIGK
Sbjct: 415 GR--GDELVAEELRIAIHLMGRLLGRVDIDDILDSLFKEFCIGK 456


>gi|322506199|gb|ADX01653.1| TrmE [Acinetobacter baumannii 1656-2]
          Length = 451

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 2   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF EEE
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348
           LL+ ++N         +  F ++I+    + IG K DL     E  D     H+  S   
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359

Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           E G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|262374714|ref|ZP_06067986.1| tRNA modification GTPase TrmE [Acinetobacter junii SH205]
 gi|262310370|gb|EEY91462.1| tRNA modification GTPase TrmE [Acinetobacter junii SH205]
          Length = 454

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 174/457 (38%), Positives = 265/457 (57%), Gaps = 23/457 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M H+  TI A++T      + +IRLSGP  + + E +  K  P  R A  R F+  DG +
Sbjct: 4   MQHQT-TIAAIATPLGRGGVGVIRLSGPKAYAIAEQLTAKGLPAARMAGFRQFYDADGTV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+++ FP+P SFTGED  E   HGG  + N +L  L  +  +  A  GEFS RAFEN
Sbjct: 63  MDEGIVLCFPNPHSFTGEDVVEIQGHGGPVIQNALLARLLDLGAVA-AKAGEFSMRAFEN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF E
Sbjct: 122 GKMDLVQAEAIADLIDASSQAAARSAVRSLQGAFSTKINSVLEKLIHLRLHVEAAIDFPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +  ++L  +  ++N + +     + G+++R G ++VI G  NAGKSSL NALA
Sbjct: 182 EE-IDFLADGKILALLDDVQNSVKAVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVE+EGI+R   E+E AD
Sbjct: 241 GHERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEREGIRRAIKEIEQAD 300

Query: 301 LILLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYDHL------ISS 345
           L+LL+ ++N         +  F ++++    + IG K DL     E  D+       +S+
Sbjct: 301 LLLLVYDLNQNDDPLLLAQEYFAEHLEPKRLLLIGNKCDLTGQAAELSDYQGFRHIRVSA 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403
               G++ LI+ I +     F+    +  +  RHL  + +T RYL  A   L   + G +
Sbjct: 361 KQDMGVQALIDAITA--HAGFQPEEDTFIARTRHLDAMKRTQRYLAEAREQLVVFNAG-E 417

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 418 LVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|192288728|ref|YP_001989333.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris TIE-1]
 gi|226704785|sp|B3Q8A8|MNME_RHOPT RecName: Full=tRNA modification GTPase mnmE
 gi|192282477|gb|ACE98857.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris TIE-1]
          Length = 441

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 174/450 (38%), Positives = 256/450 (56%), Gaps = 19/450 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA++TG LPSAI+I+R+SG     V   +     P PR+A        DG +
Sbjct: 1   MHPSDQTIFALATGPLPSAIAILRVSGSRAGDVLRALTGSLPP-PRRAVRCDLRSRDGDL 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + FP+P S TGED AE H+HG  AV   +++ L+    +R A PGEF+RR FEN
Sbjct: 60  IDDGVALWFPTPASATGEDVAELHIHGSRAVAAALIKTLSAFEGVRPAEPGEFTRRGFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++T+ QRR ++  + G L     QW D++    + +EA +DFS+
Sbjct: 120 GKLDLTEAEGLDDLIHADTDAQRRQALRQLGGVLGDRARQWRDQIIEALALVEAGIDFSD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV +         I  L  +I+  +++   GE +R+G  + I G  N GKS+L N LA
Sbjct: 180 EGDVADELMGPARAKIAELSAEIAEVLAEQGRGEKLRDGMVVAIAGPPNVGKSTLINRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRDV+ I LDL+GY V + DTAG+R++DD VE+EG++R  L    AD
Sbjct: 240 RREVAIVSPHAGTTRDVIEIQLDLDGYPVTVIDTAGLRDSDDPVEQEGVRRARLRAAAAD 299

Query: 301 LILLLKEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEE 353
           L+L L   ++  + S P  K  +   +  K DL +    E         IS+ TGEG  +
Sbjct: 300 LVLWL---STATDASDPDVKGPEVWRVRNKIDLANGEVAESGPSQPVFRISAATGEGFAD 356

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE---MASLNEKDCGLDIIAENLR 410
           L+ ++    +  F      + +  RH   L+     L    +  L E     +I+AE LR
Sbjct: 357 LLRELTRFAAQYFGSAEAGLITRDRHRRLLADAAASLTRSLVPGLAE-----EIVAEELR 411

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++ SLG++ G VDVE +L  IF +FCIGK
Sbjct: 412 ASAHSLGRLLGRVDVEDVLGEIFGRFCIGK 441


>gi|260558088|ref|ZP_05830299.1| tRNA modification GTPase TrmE [Acinetobacter baumannii ATCC 19606]
 gi|260408442|gb|EEX01749.1| tRNA modification GTPase TrmE [Acinetobacter baumannii ATCC 19606]
          Length = 454

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 5   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADGSIMD 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK
Sbjct: 65  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 123

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF EEE
Sbjct: 124 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 183

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 184 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 242

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VEKEGI+R   E+E ADL+
Sbjct: 243 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 302

Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348
           LL+ ++N         +  F ++I+    + IG K DL     E  D     H+  S   
Sbjct: 303 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 362

Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           E G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 363 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 420 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|39933372|ref|NP_945648.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris CGA009]
 gi|81829794|sp|Q6ND14|MNME_RHOPA RecName: Full=tRNA modification GTPase mnmE
 gi|39652997|emb|CAE25739.1| putative GTPase involved in synthesis of
           5-methylaminomethyl-2-thiouridine, found in the wobble
           position of some tRNA's [Rhodopseudomonas palustris
           CGA009]
          Length = 441

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 172/450 (38%), Positives = 256/450 (56%), Gaps = 19/450 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA++TG LPSAI+I+R+SG    +V   +     P PR+A        DG +
Sbjct: 1   MHPSDQTIFALATGPLPSAIAIVRVSGSRAGEVLTALTGSLPP-PRRAVRCDLRSRDGDL 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + FP+P S TGED AE H+HG  AV   +++ L+    +R A PGEF+RR FEN
Sbjct: 60  IDDGVALWFPTPASATGEDVAELHIHGSRAVAAALIKTLSAFEGVRPAEPGEFTRRGFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++T+ QRR ++  + G L     +W D++    + +EA +DFS+
Sbjct: 120 GKLDLTEAEGLDDLIHADTDAQRRQALRQLGGVLGDRARRWRDQIIEALALVEAGIDFSD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV +         I  L  +I+  +++   GE +R+G  + I G  N GKS+L N LA
Sbjct: 180 EGDVADELMGPARAKIAELSAEIAEVLAEQGRGEKLRDGMVVAIAGPPNVGKSTLINRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRDV+ I LDL+GY V + DTAG+R++DD VE+EG++R       AD
Sbjct: 240 RREVAIVSPHAGTTRDVIEIQLDLDGYPVTVIDTAGLRDSDDPVEQEGVRRARSRAAAAD 299

Query: 301 LILLLKEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEE 353
           L+L L   ++  + S P  K  +   +  K DL +    E         IS+ TGEG  +
Sbjct: 300 LVLWL---STATDASDPDVKGPEVWRVRNKIDLATGEVAESGPSQPVFRISAATGEGFAD 356

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE---MASLNEKDCGLDIIAENLR 410
           L+ ++    +  F      + +  RH   L+     L    +  L E     +I+AE LR
Sbjct: 357 LLRELTRFAAQYFGSAEAGLITRDRHRRLLADAAASLTRSLVPGLAE-----EIVAEELR 411

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++ SLG++ G VDVE +L  IF +FCIGK
Sbjct: 412 ASAHSLGRLLGRVDVEDVLGEIFGRFCIGK 441


>gi|323516075|gb|ADX90456.1| tRNA modification GTPase TrmE [Acinetobacter baumannii TCDC-AB0715]
          Length = 451

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 2   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARLAGFRKFYDADGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF EEE
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348
           LL+ ++N         +  F ++I+    + IG K DL     E  D     H+  S   
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359

Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           E G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|325123489|gb|ADY83012.1| tRNA modification GTPase [Acinetobacter calcoaceticus PHEA-2]
          Length = 451

 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 174/455 (38%), Positives = 265/455 (58%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
             + TI A++T      + +IRLSGP  +++ + + +K  P  R A  R F+  DG I+D
Sbjct: 2   QSQTTIAAIATPPGRGGVGVIRLSGPKAYEIAQNLTQKNLPEARMAGFRKFYDADGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPHSFTGEDVVEIQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF EEE
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348
           LL+ ++N         +  F ++I+    + IG K DL S   E  D     H+  S   
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTSQLAELSDFQGFRHITVSAKQ 359

Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           E G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLSEAREQLVVFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|329847386|ref|ZP_08262414.1| tRNA modification GTPase TrmE [Asticcacaulis biprosthecum C19]
 gi|328842449|gb|EGF92018.1| tRNA modification GTPase TrmE [Asticcacaulis biprosthecum C19]
          Length = 443

 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 171/446 (38%), Positives = 262/446 (58%), Gaps = 16/446 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    + +SI+RLSGP  F   + +  K  P P + ++      DG ++D+ +
Sbjct: 3   QTIFALASAQGRAGVSILRLSGPDAFSALQRLTDK--PVPARRAVFTALVHDGELIDEAV 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED  E HVHG  A+++ +   LA+M  LRLA PGEFSRRA ENGK+DL
Sbjct: 61  VLFFQGPNSFTGEDCVELHVHGSRAILDRLYVILAEM-GLRLAQPGEFSRRALENGKLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADL+ +E+E QRR ++  M G L + Y  W   L  I + IE  +DF +E D+ 
Sbjct: 120 TQAEAIADLVDAESEAQRRQALTQMGGGLKTQYEAWHAALVDILARIEVYIDFPDE-DLP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                 +L+ +  ++  + + I+  K G  IR G++IVILG  NAGKSSLFNAL K + A
Sbjct: 179 TELVDSILDRMAAVQASLEAAIADAKRGRQIREGFRIVILGEPNAGKSSLFNALLKAETA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT I GTTRDV+  +L +  Y V + DTAG+RET ++VE+EGI+R   + + ADL L +
Sbjct: 239 IVTPIAGTTRDVIEAELRIGPYSVLLYDTAGLRETAEVVEREGIRRARAKGDEADLRLWV 298

Query: 306 KEINSKK----EISFPKNIDFIFIGTKSD-LYSTYTE-EYDHLISSF-----TGEGLEEL 354
            + ++      E      + F  I   SD LY ++ + +     S+F     TG+G++EL
Sbjct: 299 IDSSASGLDGVESRAGDLVAFNKIDQGSDNLYESFKDADVSRGTSAFKVSVATGQGIDEL 358

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
           +  ++S+++ +     F   +  RH   L   V +L+ A L       ++ AE++R +  
Sbjct: 359 VRALESVVTKRLSVQTFPAATRARHFERLQDAVDHLDHARLTRMRVP-ELTAEHVRGSIN 417

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           S   + G  DVE +LD++FS FCIGK
Sbjct: 418 SFEALFGRYDVEGILDVVFSTFCIGK 443


>gi|184156330|ref|YP_001844669.1| tRNA modification GTPase TrmE [Acinetobacter baumannii ACICU]
 gi|183207924|gb|ACC55322.1| predicted GTPase [Acinetobacter baumannii ACICU]
          Length = 451

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 2   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPHSFTGEDVVELQSHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF EEE
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348
           LL+ ++N         +  F ++I+    + IG K DL     E  D     H+  S   
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQPAEISDYQGFRHITVSAKQ 359

Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           E G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|169797809|ref|YP_001715602.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AYE]
 gi|205829063|sp|B0V5S5|MNME_ACIBY RecName: Full=tRNA modification GTPase mnmE
 gi|169150736|emb|CAM88648.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Acinetobacter baumannii AYE]
          Length = 454

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 174/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 5   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDTDGSIMD 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK
Sbjct: 65  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 123

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF EEE
Sbjct: 124 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 183

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 184 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 242

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E ADL+
Sbjct: 243 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 302

Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348
           LL+ ++N         +  F ++I+    + IG K DL     E  D     H+  S   
Sbjct: 303 LLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 362

Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           E G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 363 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVIFNAG-ELV 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 420 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|262281557|ref|ZP_06059336.1| tRNA modification GTPase mnmE [Acinetobacter calcoaceticus RUH2202]
 gi|262257016|gb|EEY75755.1| tRNA modification GTPase mnmE [Acinetobacter calcoaceticus RUH2202]
          Length = 454

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 173/453 (38%), Positives = 264/453 (58%), Gaps = 22/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           + TI A++T      + +IRLSGP  +++ + + +K  P  R A  R F+ +DG I+D+G
Sbjct: 7   QTTIAAIATPPGRGGVGVIRLSGPKAYEIAQNLTQKNLPEARMAGFRKFYDVDGSIMDEG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK+D
Sbjct: 67  IVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAIA-AKAGEFSMRAFENGKMD 125

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF EEE +
Sbjct: 126 LVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE-I 184

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  + 
Sbjct: 185 DFLADGKILALLENVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVER 244

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E ADL+LL
Sbjct: 245 AIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLLL 304

Query: 305 LKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTGE- 349
           + ++N         +  F ++I+    + IG K DL     E  D     H+  S   E 
Sbjct: 305 VYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQLAEISDFQGFRHITVSAKQEM 364

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAE 407
           G++ L+  I +     F     +  +  RHL  + +T  YL  A   L   + G +++AE
Sbjct: 365 GVQGLVEAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLSEAHEQLVVFNAG-ELVAE 421

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 422 SLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|215485156|ref|YP_002327397.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB307-0294]
 gi|301345950|ref|ZP_07226691.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB056]
 gi|301510087|ref|ZP_07235324.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB058]
 gi|301594675|ref|ZP_07239683.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB059]
 gi|332854708|ref|ZP_08435495.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6013150]
 gi|332865588|ref|ZP_08436428.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6013113]
 gi|213988539|gb|ACJ58838.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB307-0294]
 gi|332727865|gb|EGJ59267.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6013150]
 gi|332735240|gb|EGJ66317.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6013113]
          Length = 451

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 174/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 2   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDTDGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF EEE
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348
           LL+ ++N         +  F ++I+    + IG K DL     E  D     H+  S   
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359

Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           E G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVIFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|193082993|ref|NP_001122327.1| tRNA modification GTPase GTPBP3, mitochondrial isoform III [Homo
           sapiens]
          Length = 471

 Score =  288 bits (738), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 171/445 (38%), Positives = 253/445 (56%), Gaps = 19/445 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD-LIL 303
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R     E+ + L  
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRAR---ESCNFLAT 331

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINK 357
           ++  + ++      + +  +    KSDL S              L+S  TGEGL+ L+  
Sbjct: 332 VVASVGAQSPSDSSQRLLLVL--NKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLDGLLEA 389

Query: 358 IKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
           ++  L+          P  +  RH +HL   +  L       KD  L + AE LR+A   
Sbjct: 390 LRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-QSKD--LALAAEALRVARGH 446

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           L ++TG    E++LDIIF  FC+GK
Sbjct: 447 LTRLTGGGGTEEILDIIFQDFCVGK 471


>gi|316931724|ref|YP_004106706.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris DX-1]
 gi|315599438|gb|ADU41973.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris DX-1]
          Length = 442

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 174/452 (38%), Positives = 250/452 (55%), Gaps = 22/452 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA++TG LPSAI+I RLSGP    V   +     P PR+A         G +
Sbjct: 1   MHPSDQTIFALATGPLPSAIAIFRLSGPQAGNVVTALTGSL-PAPRRAVRCDLRNRSGEM 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + FP P S TGED AE H+HG  AV   +++ L+    +R A PGEF+RRAFEN
Sbjct: 60  IDDGVALWFPGPASATGEDVAELHIHGSRAVAAALIKTLSAFEGVRPAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++TE+QRR ++  + G L     +W D++    + +EA +DFS+
Sbjct: 120 GKLDLTEAEGLDDLIHADTEVQRRQALRQLQGVLGDRARRWRDQIIEALALVEAGIDFSD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV           I  L  +I+  +++   GE +R+G  + I G  N GKS+L N LA
Sbjct: 180 EGDVAADLMAPARAKIAALSAEIAEVLAEQGQGEKLRDGMVVAIAGPPNVGKSTLINRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++DVAIV+   GTTRDV+ + LDL GY V + DTAG+R++DD +E+EG++R       AD
Sbjct: 240 RRDVAIVSPHAGTTRDVIEVHLDLGGYPVTVIDTAGLRDSDDPIEQEGVRRARARAAAAD 299

Query: 301 LILLLKEIN--SKKEISFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLE 352
           L+L L      S  ++S P   +   +  K DL  T       + + D  IS+ +GEG+ 
Sbjct: 300 LVLWLSTPTDASDPDLSGP---EVWRVRNKIDLAKTDAGRKKGSSDADFRISASSGEGVG 356

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRH----LYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            L+ ++    +  F      + +  RH        +   R L      E      I+AE 
Sbjct: 357 GLLRELTQFAAQYFASAEAGLITRDRHRLLLADAGAALGRSLAPGLAEE------IVAEE 410

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LR AS  LG++ G VDVE +L  IF +FCIGK
Sbjct: 411 LRAASHDLGRLLGRVDVEDVLGEIFGRFCIGK 442


>gi|13786073|gb|AAK39556.1| mitochondrial GTP binding protein 2 [Homo sapiens]
 gi|13786075|gb|AAK39557.1| mitochondrial GTP binding protein 3 [Homo sapiens]
          Length = 471

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 171/445 (38%), Positives = 253/445 (56%), Gaps = 19/445 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD-LIL 303
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R     E+ + L  
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRAR---ESCNFLAT 331

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINK 357
           ++  + ++      + +  +    KSDL S              L+S  TGEGL+ L+  
Sbjct: 332 VVASVGAQSPSDSSQRLLLVL--NKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLDGLLEA 389

Query: 358 IKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
           ++  L+          P  +  RH +HL   +  L       KD  L + AE LR+A   
Sbjct: 390 LRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-QSKD--LALAAEALRVARGH 446

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           L ++TG    E++LDIIF  FC+GK
Sbjct: 447 LTRLTGGGGTEEILDIIFQDFCVGK 471


>gi|84501195|ref|ZP_00999400.1| tRNA modification GTPase [Oceanicola batsensis HTCC2597]
 gi|84390486|gb|EAQ02974.1| tRNA modification GTPase [Oceanicola batsensis HTCC2597]
          Length = 426

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 169/437 (38%), Positives = 257/437 (58%), Gaps = 14/437 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA +T    + ++I+RLSGP  +Q    +     P PR+ +LR   G +G +LD+GL
Sbjct: 2   DTIFAQATAPGKAGVAIVRLSGPRAWQAVSELSGPL-PAPRRVALRTIAGPEG-VLDEGL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +++F    SFTGE  AE  +HG  AVV  +L+ L+ M  LR A PGEF+RRA ENG +DL
Sbjct: 60  VLIFEEGASFTGEKVAELQLHGSTAVVEAVLKVLSDMEELRSAEPGEFTRRALENGCLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ +   ++GEL      W   L    + IEA +DF++EE V 
Sbjct: 120 AQVEGLADLIDAETEAQRKQAQRVLAGELGEKAEAWRRDLIRAAALIEATIDFADEE-VP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EVL+ +  ++N +S   +   + E +R G+++ I+G  N GKSSL NALA ++ A
Sbjct: 179 TDVTPEVLSLLHDVRNGLSREAAGVGIAERVRQGFEVAIVGAPNVGKSSLLNALAGREAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +++ GTTRDV+ + +DL G  V + DTAG+R+TDD+VE  G++R       ADL + L
Sbjct: 239 ITSEVAGTTRDVIEVRMDLAGLPVTVLDTAGLRDTDDVVETIGVERARERAAVADLRVFL 298

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
             +      +FP     I   +K+D+      E    +S+ TG GL +L+ +I   LS+ 
Sbjct: 299 VFLGEAP--AFPPGPKDIVRVSKADVVG----EAAGRVSAETGYGLTDLVAEISGKLSDM 352

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCV 423
             +   S+ + +RH   L + + +L+ A+  L E+   +++ AE +R A  +L  + G V
Sbjct: 353 LGR--SSVATRERHRIALERAMDFLDAANQVLTER-GDMEVAAEEIRSAIRALESLVGRV 409

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LLD IF+ FCIGK
Sbjct: 410 DVEMLLDDIFASFCIGK 426


>gi|239503914|ref|ZP_04663224.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB900]
          Length = 451

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 2   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDTDGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF EEE
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGKLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348
           LL+ ++N         +  F ++I+    + IG K DL     E  D     H+  S   
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359

Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           E G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|88607072|ref|YP_505803.1| tRNA modification GTPase TrmE [Anaplasma phagocytophilum HZ]
 gi|123494246|sp|Q2GIJ8|MNME_ANAPZ RecName: Full=tRNA modification GTPase mnmE
 gi|88598135|gb|ABD43605.1| tRNA modification GTPase TrmE [Anaplasma phagocytophilum HZ]
          Length = 445

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 171/451 (37%), Positives = 265/451 (58%), Gaps = 18/451 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + +TIFA+ST    S +++IR+SGPS  +    +  K    PR A  R      GR+
Sbjct: 2   VKRQTDTIFALSTAQGKSGVAVIRISGPSSMEALRLLGVKDDISPRVAHCRLLHDSKGRL 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ +++ FP P SFTGED  E  VHG  AV+  + EEL     +R+A PGEFS RA+ N
Sbjct: 62  IDQAVVLYFPKPGSFTGEDVVELQVHGSRAVIRLLYEELQTF--IRIAEPGEFSLRAYLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL  AE +ADLI++ET+ Q R ++   +G+L   Y QW   L  I + +EA +DF E
Sbjct: 120 GKIDLTRAEGIADLINAETDAQLRQALAQSTGKLEKQYDQWRSILLDILTDLEACIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           + D        + N+I  L   +  +++ G  GE +R+G ++VILG  NAGKS+LFN++A
Sbjct: 180 DVDSSCVLGG-IYNNIEKLCAVLGQYLNDGHRGERLRSGVRVVILGPPNAGKSTLFNSIA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIV++ PGTTRDVL + +D+ GY   + DTAGIRE+ D +E+EGIKR  +  E AD
Sbjct: 239 RRNAAIVSEHPGTTRDVLEVAIDIGGYPYIVLDTAGIRESCDGIEQEGIKRAKMAAEEAD 298

Query: 301 LILL--------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGE 349
           + ++        ++ I+   ++   K I  +      DL  +     +E+ HLIS     
Sbjct: 299 IKIVMYPYETTSMQGIDPICDLQDEKTILVLSKADNVDLPESKCIDGKEF-HLISVHQDR 357

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           G+ +L+  I+    + F +      + +RH  HL + ++ ++  S   K   ++I+AE+L
Sbjct: 358 GIGKLLTLIQEKSRDSFPQEGDVFITSQRHRSHLQKALQVVDAVS---KVMPIEIVAEHL 414

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R+A+  LG++TG V  + +LD IFSKFCIGK
Sbjct: 415 RIAAYELGRVTGAVSGDDILDDIFSKFCIGK 445


>gi|328793826|ref|XP_001121197.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
           [Apis mellifera]
          Length = 488

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 181/463 (39%), Positives = 268/463 (57%), Gaps = 36/463 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKGL 65
           TI+A+S+G     +++IR+SGP      + + K  K  PR A L+  +  + + +LD+GL
Sbjct: 33  TIYALSSGYGKCGVAVIRISGPKALIALKRMTKISKLIPRMALLKKIYDPETKEMLDRGL 92

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  EFHVHGG AV+  IL  LAK+ + +LA PGEF+RRAF NGK+DL
Sbjct: 93  CLWFPGPNSFTGEDCIEFHVHGGPAVITSILNALAKL-HFQLAFPGEFTRRAFLNGKLDL 151

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE + DLI +ETE QR+ +     G L  +Y  W   L +I + +EA +DF+EE +V 
Sbjct: 152 TEAEGIGDLIEAETEKQRKQASNQTIGSLYHIYESWRIILLNILANLEAYIDFAEEHNVT 211

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +   ++   +I  L   I  H+S  + GEI+R+G  + ILG  N GKSS  N L+KK+ A
Sbjct: 212 SNILEDTKINIQKLYVKIQQHLSDERKGEILRSGIHVAILGKPNVGKSSFLNLLSKKNAA 271

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENADLILL 304
           IVT +PGTTRD++ + +D+ GY + ++DTAGIR   ++ +E EGIK+T    + AD I+ 
Sbjct: 272 IVTSLPGTTRDIIELTIDICGYPMILADTAGIRNNPENEIEIEGIKKTKEYSKKADFIIC 331

Query: 305 L---------------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
           +                      EI+ K+ +     ID I    K D   ++ ++    I
Sbjct: 332 IISAENNVKTSLEDFLKQYKNFLEIDKKRVLLILNKIDLI----KEDEIESWRKQNVIPI 387

Query: 344 SSFTGEGLEELINKI----KSILSNKFKKLP-FSIPSHKRHLYHLSQTVR-YLEMASLNE 397
           S  T EGL+ELIN +    + I  N  K+ P  S   ++ HL H+   ++ YLE   +  
Sbjct: 388 SCKTQEGLKELINALGQCFEEICGNPCKESPVISHARYRNHLLHVLDYLKYYLEKTKIPN 447

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  + +  +++R A+  LGKITG ++ E++LDIIF  FCIGK
Sbjct: 448 YDMAISL--QDIRNAARELGKITGSINNEEVLDIIFKNFCIGK 488


>gi|237809900|ref|YP_002894340.1| tRNA modification GTPase TrmE [Tolumonas auensis DSM 9187]
 gi|237502161|gb|ACQ94754.1| tRNA modification GTPase TrmE [Tolumonas auensis DSM 9187]
          Length = 453

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 175/453 (38%), Positives = 263/453 (58%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      I I+R+SGP C  V E +  K  P  R A L  F  +DG+ LD+G+
Sbjct: 4   DTIVALATPPGRGGIGILRISGPLCKLVAEQVLGKI-PKVRHAELLPFCDVDGKALDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            ++F +P SFTGED  E   HGG  V++ +L  +  +  +RLA PGEFS RAF N K+DL
Sbjct: 63  ALLFKAPYSFTGEDVLELQGHGGPVVLDMLLRRILTINGVRLARPGEFSERAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M+ + GE S+   Q +D LT++R ++EA +DF EEE + 
Sbjct: 123 AQAEAIADLIEATSEQAARSAMQSLQGEFSTRIHQLVDSLTNLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S   + N +  + +D++    + + G ++R+G K+VI G  NAGKSSL NALA ++ A
Sbjct: 182 FLSDGRIANALYGVMDDLAQVKREAQQGALLRDGMKVVIAGRPNAGKSSLLNALAGRESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+TDD VEK GI+R + E+E AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTDDTVEKIGIERAWAEIEQADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDHL---ISSFTG 348
            +  +    +            P+N+    +  K+DL     T +EE  +    IS+ TG
Sbjct: 302 VDGTTTDARNPHDLWPDFVDRLPENLGITVVRNKADLTGEALTVSEENGYAVYPISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            GL+ L   +K+ +  +   L     + +RHL  + +    L+ A +  E     +++AE
Sbjct: 362 LGLDALREHLKACMGFQ-STLEGGFIARRRHLDAIERASERLDEAKVQLEIYLAGELVAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRLAQEALSEITGAFSADDLLGRIFSSFCIGK 453


>gi|33414589|ref|NP_115933.2| tRNA modification GTPase GTPBP3, mitochondrial precursor [Mus
           musculus]
 gi|81867616|sp|Q923K4|GTPB3_MOUSE RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial;
           AltName: Full=GTP-binding protein 3; Flags: Precursor
 gi|60729690|pir||JC8039 mitochondrial GTP-binding protein GTPBP3 - mouse
 gi|14388168|gb|AAK60410.1| GTP binding protein 3 [Mus musculus]
 gi|33303614|gb|AAK35216.2| mitochondrial GTP-binding protein 1 [Mus musculus]
 gi|148668861|gb|EDL01029.1| GTP binding protein 3, isoform CRA_a [Mus musculus]
 gi|187951095|gb|AAI38561.1| GTP binding protein 3 [Mus musculus]
          Length = 492

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 176/461 (38%), Positives = 254/461 (55%), Gaps = 30/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64
           TIFA+S+G    AI++IR SGP+       +   ++P P R+A LR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALQEPPPARRACLRLLRHPCSGEPLDRS 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GELS L   W   LT   +++EA +DF E++++
Sbjct: 155 LTEVEGLADLIRAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAYVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + SH+   + G+ + +G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQADREVRALEVALGSHLRDARRGQRLLSGANVVVTGPPNAGKSSLVNLLSQKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL- 303
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R    +E AD+IL 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGAVEQEGVRRARHRLEQADIILG 334

Query: 304 --LLKEINSKKEISFPKNIDFIFIGTKSD--------------LYSTYTEEYD-----H- 341
                ++ S    SF   +    +    D              L S      D     H 
Sbjct: 335 VLDASDLASSSSCSFLDTVVTPLLAQSQDSGGQRLLLLLNKSDLLSANAPACDIALPPHL 394

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKD 399
           L+S  TG G++ L+  +K+ L+          P  +  RH YHL   +  L    L    
Sbjct: 395 LLSCHTGAGMDSLLQALKTELAAVCGDPSTGPPLLTRVRHQYHLQGCLDALGHYQLATD- 453

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + AE LR A   L  +TG    E++LD+IF  FC+GK
Sbjct: 454 --LALAAEALRQARRQLNHLTGGGGTEEILDLIFQDFCVGK 492


>gi|205422256|sp|Q07UP2|MNME_RHOP5 RecName: Full=tRNA modification GTPase mnmE
          Length = 453

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 169/460 (36%), Positives = 258/460 (56%), Gaps = 27/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA+S+G  PSAI+I+R+SG    ++ E +  +  P PR A        DG  
Sbjct: 1   MHASDQTIFALSSGRPPSAIAIVRVSGSRGAKIVEALAGRL-PTPRMAMRALIKDRDGEP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ FP P S TGED AEFH+HGG AV+  ++  L+   N+R A PGEF+RRAFE+
Sbjct: 60  IDDAVVLWFPGPASATGEDVAEFHIHGGRAVLAALMATLSSFENVRAAEPGEFTRRAFEH 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL EAE L DLI ++T+ QRR ++  ++G L      W  ++   ++ IEA +DF++
Sbjct: 120 GKIDLTEAEGLDDLIHADTDRQRRQALRQLNGLLGDRARDWRAQIIEAQALIEAGIDFAD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV +      L  I  L  +I + ++     E +R+G  + I+G  N GKS+L N LA
Sbjct: 180 EGDVPDDLLAPALAKIEALAGEIEALLAAQGRSERLRDGLVVAIVGPPNVGKSTLMNQLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRDV+ + LDL+GY V + DTAGIR++DD VE+EG++R       AD
Sbjct: 240 RREVAIVSPHAGTTRDVIEVHLDLDGYPVTVIDTAGIRDSDDPVEQEGVRRAQARAAEAD 299

Query: 301 LILLLKEINSKKEISFPKNID----FIFIGTKSDLYSTYT----------------EEYD 340
           L+L L    +  +++ P  I+       +  K DL    T                 +  
Sbjct: 300 LVLWLL---ADDQVAAPAAIESDAPVWLVRNKVDLAGAATGVKPAKNLEANLGQNVPQPS 356

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
             IS+  G+G+ +L+  +    +  F        + +RH   L   +  L+ +     + 
Sbjct: 357 FAISAKRGDGIADLVGALGGFAAEFFGAGEAGAITRQRHRDLLRDALVMLQCSKRGRAE- 415

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE+LR AS SLG++ G VDVE +LD +F  FCIGK
Sbjct: 416 --ELVAEDLRSASRSLGRLLGQVDVEDVLDALFRDFCIGK 453


>gi|58039527|ref|YP_191491.1| tRNA modification GTPase TrmE [Gluconobacter oxydans 621H]
 gi|81819099|sp|Q5FS11|MNME_GLUOX RecName: Full=tRNA modification GTPase mnmE
 gi|58001941|gb|AAW60835.1| tRNA modification GTPase [Gluconobacter oxydans 621H]
          Length = 437

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 170/444 (38%), Positives = 260/444 (58%), Gaps = 22/444 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
           ++  + IFA++TG   +AI+I+R SGP    + + +C  + P PR+ SLR     +G +L
Sbjct: 11  DNTPQVIFALATGPSRAAIAIMRASGPGSDAILKALCNGRLPAPRRVSLRTLRH-NGEVL 69

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  + +  P P S+TGED  E H+H G A++  I + L  +   R A PGEF+RRA + G
Sbjct: 70  DHAVALWLPGPNSYTGEDGFELHLHAGPAIIARIADALTDL-GARPAEPGEFTRRAVQKG 128

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DLL+AE++ADL+ +ETE QR+ ++    G LS LY  W  +L  + +  EA +DF +E
Sbjct: 129 RLDLLQAEAIADLVDAETESQRKQALRQADGALSRLYDDWAQRLRLVLAHQEALIDFPDE 188

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E  Q+     ++ ++  L+ ++S+H+ Q   GE++R G  +VI G  N GKSSL NAL+ 
Sbjct: 189 ELPQDVEDG-LIEELSKLQTEMSAHL-QDNRGELMRQGLTVVIAGSPNVGKSSLLNALSG 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            D AIVT   GTTRD + +D  L+G  +++ DTAG+RET+D +E EGI+R    V+ AD+
Sbjct: 247 TDAAIVTHRAGTTRDAIALDWVLDGVRLRLIDTAGLRETEDEIEAEGIRRALFHVKQADV 306

Query: 302 IL-LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           +L L+    S   +S  +    I I TK D+           IS+ +GEGL  L    + 
Sbjct: 307 VLHLIGPDESLDTLSGQE----IPIRTKIDIAPAPPGMLG--ISTQSGEGLAAL----RQ 356

Query: 361 ILSNKFKKL---PFSIP-SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           ILS +  +L     + P +  RH   + + V +L+ A         ++  E LRL+ ++L
Sbjct: 357 ILSERVAELMAGSAAPPLTRARHRAGIQEAVTHLDHA---RTATWPELRGEELRLSMLAL 413

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G++TG VDVE LLD IF +FCIGK
Sbjct: 414 GRLTGRVDVESLLDAIFGQFCIGK 437


>gi|193078405|gb|ABO13382.2| tRNA modification GTPase [Acinetobacter baumannii ATCC 17978]
          Length = 451

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 2   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL ++R  +EA +DF EEE
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIYLRLHVEAAIDFPEEE 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348
           LL+ ++N         +  F ++I+    + IG K DL     E  D     H+  S   
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359

Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           E G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|163745111|ref|ZP_02152471.1| tRNA modification GTPase TrmE [Oceanibulbus indolifex HEL-45]
 gi|161381929|gb|EDQ06338.1| tRNA modification GTPase TrmE [Oceanibulbus indolifex HEL-45]
          Length = 428

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 165/438 (37%), Positives = 260/438 (59%), Gaps = 14/438 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA ++    + +++IR+SGP  F +   I  K+ P  R + LR      G ++D+ L
Sbjct: 2   DTIFAQASAPGRAGVAVIRISGPQAFAIAHKISGKQ-PEGRTSVLRNLQNAAGEVIDQAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED  EF +HG IAVV  +L  L++ P+ R+A  GEF+RRA EN K+DL
Sbjct: 61  VLSFPGPNSFTGEDVIEFQLHGSIAVVRAMLATLSEFPDTRIAEAGEFTRRALENEKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ ++  +SG L +    W   L    + +EA +DF++EE   
Sbjct: 121 AQVEGLADLIEAETEAQRKQAVRVLSGHLGARVEDWRKDLIRAAALLEATIDFADEEVPI 180

Query: 186 NFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           + + +  +ND+L  +  ++ + I    + E +R+G+++ I+G  NAGKS+L NALA +D 
Sbjct: 181 DVTPE--VNDLLTKVGAELKAEIRGTHVAERVRSGFEVAIIGPPNAGKSTLLNALAGRDA 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI +++ GTTRDV+ + +DL G  V + DTAG+R+++D +E  GI+R     + ADL + 
Sbjct: 239 AITSELAGTTRDVIEVRMDLGGLPVTLLDTAGLRDSEDQIEAIGIERAIERSKLADLRVF 298

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           L        +S P+  D + +  K+DL S    + ++ +S  TG+G+ +LI +I++ LS 
Sbjct: 299 LAAPGESLMVS-PEAEDIVLV-PKADLVS----DSENGVSGKTGQGVSDLIARIQTTLSK 352

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGC 422
           +   +   + +H+RH   L Q V  L    A L       D+ AE LR A  +L  + G 
Sbjct: 353 RSSGV--GLATHERHRVALEQAVSCLAEVDAILTRGPDFYDLAAEELRFAIRALESLVGR 410

Query: 423 VDVEQLLDIIFSKFCIGK 440
           +DVE LLD IF+ FC+GK
Sbjct: 411 IDVENLLDEIFTSFCVGK 428


>gi|115522411|ref|YP_779322.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris BisA53]
 gi|115516358|gb|ABJ04342.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris BisA53]
          Length = 482

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 169/460 (36%), Positives = 258/460 (56%), Gaps = 27/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA+S+G  PSAI+I+R+SG    ++ E +  +  P PR A        DG  
Sbjct: 30  MHASDQTIFALSSGRPPSAIAIVRVSGSRGAKIVEALAGRL-PTPRMAMRALIKDRDGEP 88

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ FP P S TGED AEFH+HGG AV+  ++  L+   N+R A PGEF+RRAFE+
Sbjct: 89  IDDAVVLWFPGPASATGEDVAEFHIHGGRAVLAALMATLSSFENVRAAEPGEFTRRAFEH 148

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL EAE L DLI ++T+ QRR ++  ++G L      W  ++   ++ IEA +DF++
Sbjct: 149 GKIDLTEAEGLDDLIHADTDRQRRQALRQLNGLLGDRARDWRAQIIEAQALIEAGIDFAD 208

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV +      L  I  L  +I + ++     E +R+G  + I+G  N GKS+L N LA
Sbjct: 209 EGDVPDDLLAPALAKIEALAGEIEALLAAQGRSERLRDGLVVAIVGPPNVGKSTLMNQLA 268

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRDV+ + LDL+GY V + DTAGIR++DD VE+EG++R       AD
Sbjct: 269 RREVAIVSPHAGTTRDVIEVHLDLDGYPVTVIDTAGIRDSDDPVEQEGVRRAQARAAEAD 328

Query: 301 LILLLKEINSKKEISFPKNID----FIFIGTKSDLYSTYT----------------EEYD 340
           L+L L    +  +++ P  I+       +  K DL    T                 +  
Sbjct: 329 LVLWLL---ADDQVAAPAAIESDAPVWLVRNKVDLAGAATGVKPAKNLEANLGQNVPQPS 385

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
             IS+  G+G+ +L+  +    +  F        + +RH   L   +  L+ +     + 
Sbjct: 386 FAISAKRGDGIADLVGALGGFAAEFFGAGEAGAITRQRHRDLLRDALVMLQCSKRGRAE- 444

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE+LR AS SLG++ G VDVE +LD +F  FCIGK
Sbjct: 445 --ELVAEDLRSASRSLGRLLGQVDVEDVLDALFRDFCIGK 482


>gi|205829074|sp|A3M8Y8|MNME_ACIBT RecName: Full=tRNA modification GTPase mnmE
          Length = 454

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 5   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADGSIMD 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK
Sbjct: 65  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 123

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL ++R  +EA +DF EEE
Sbjct: 124 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIYLRLHVEAAIDFPEEE 183

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 184 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 242

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E ADL+
Sbjct: 243 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 302

Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348
           LL+ ++N         +  F ++I+    + IG K DL     E  D     H+  S   
Sbjct: 303 LLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 362

Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           E G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 363 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 420 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|58584293|ref|YP_197866.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|81311677|sp|Q5GTQ0|MNME_WOLTR RecName: Full=tRNA modification GTPase mnmE
 gi|58418609|gb|AAW70624.1| Predicted GTPase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 442

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 171/451 (37%), Positives = 268/451 (59%), Gaps = 20/451 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M +  ETIFA+ST    S +++IR+SG    +        K   PR A+L   +    ++
Sbjct: 1   MMNTDETIFALSTVFGKSGVAVIRISGNHALKALNHFHVNKDMKPRFATLVDLYDSSDQL 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ I FP+P SFTGED  E  VHGG AV+  +LEEL+++    +A PGEF  RAF N
Sbjct: 61  IDNGIAIYFPAPNSFTGEDVIELQVHGGKAVIKIVLEELSRI--FVMAKPGEFLLRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK DL + E +ADLI +ET+MQ + +++ MSGEL  LY  W  +L  ++S IEA +DF E
Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAIKQMSGELEKLYSSWRQRLIAVQSKIEAYIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   +    +++ +++  L   I  H++  + GE +R G  IVI G  N GKS+LFN LA
Sbjct: 179 DVATEKNELEKINDEVQTLVQSIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++D+AIV++  GTTRD+L   +D+ GY + +SDTAGIRE+ D VE EGI R       AD
Sbjct: 239 RRDIAIVSEYVGTTRDILEAHIDIGGYPIILSDTAGIRESSDPVESEGISRAKKRSCEAD 298

Query: 301 LILLLKEINSKKEISFPKNI---DFIFIGTKSD----LYSTYTEEYDHL-ISSFTGEGLE 352
           L + L     +  I+   N+   + I++ +K+D     +     + D L +S   G G E
Sbjct: 299 LRIELFPFEQRYNINC--NVISSNTIYVLSKADDVINDHDIKISDIDFLPVSILKGIGTE 356

Query: 353 ELINKIKSILSNKF---KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           +L++ IK  +  KF   + +P  + + +RH   + + + +L   ++N     +++++E+L
Sbjct: 357 KLVSVIKEKVEEKFVYDRDVP--VITRQRHRNCMQKAIEHLRRFNMNNP---IELVSEDL 411

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           RLA+  LG +TG ++VE++LD IF+ FC+GK
Sbjct: 412 RLAASELGVVTGIINVEEVLDDIFNNFCVGK 442


>gi|299772120|ref|YP_003734146.1| tRNA modification GTPase TrmE [Acinetobacter sp. DR1]
 gi|298702208|gb|ADI92773.1| tRNA modification GTPase TrmE [Acinetobacter sp. DR1]
          Length = 451

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 263/455 (57%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
             + TI A++T      + +IRLSGP  +++ + + +K  P  R A  R F+  DG I+D
Sbjct: 2   QSQTTIAAIATPPGRGGVGVIRLSGPKAYEIAQNLTQKNLPEARMAGFRKFYDADGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPYSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF EEE
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348
           LL+ ++N         +  F ++I+    + IG K DL     E  D     H+  S   
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQLAEINDFQGFRHITVSAKQ 359

Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           E G++ L+  I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVEAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLSEAREQLVVFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|293611390|ref|ZP_06693686.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826262|gb|EFF84631.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 454

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 172/455 (37%), Positives = 263/455 (57%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
             + TI A++T      + +IRLSGP  +++ + + +K  P  R A  R F+  D  I+D
Sbjct: 5   QSQTTIAAIATPPGRGGVGVIRLSGPKAYEIAQNLTQKNLPEARMAGFRKFYDADASIMD 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK
Sbjct: 65  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 123

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF EEE
Sbjct: 124 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 183

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 184 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 242

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E ADL+
Sbjct: 243 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 302

Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348
           LL+ ++N         +  F ++I+    + IG K DL     E  D     H+  S   
Sbjct: 303 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQLAEISDFQGFRHITVSAKQ 362

Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           E G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 363 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLSEAREQLVVFNAG-ELV 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 420 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|329113883|ref|ZP_08242654.1| tRNA modification GTPase MnmE [Acetobacter pomorum DM001]
 gi|326696893|gb|EGE48563.1| tRNA modification GTPase MnmE [Acetobacter pomorum DM001]
          Length = 443

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 173/449 (38%), Positives = 255/449 (56%), Gaps = 27/449 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF---GLDGRIL 61
           ++TIFA+STG   +AI+++R+SG     +   +C K  P  RKA LR  +        +L
Sbjct: 9   EDTIFALSTGIERAAIAVLRVSGAGSRNILLQLCGKV-PEARKAVLRKIWKNASAQDDLL 67

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L++ FP P+S+TGED  E H+H G A++  + + L ++   R A PGEF+RRAF NG
Sbjct: 68  DEALVLWFPGPQSYTGEDGFELHLHAGPAIIRAVSDALVQL-GARPAEPGEFTRRAFVNG 126

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL+EAE +ADL+++ET+ QR+L++    G LS LY  W ++L  + +F EA +DF +E
Sbjct: 127 RMDLVEAEGIADLVAAETDGQRKLALAQADGALSHLYSGWSERLKKVLAFQEALIDFPDE 186

Query: 182 ---EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
               +V+   ++E+      L+ ++  HI+ G+ GE IR G    I G  NAGKSSL N 
Sbjct: 187 GLPPEVEEGINQEIQK----LQFEMQQHIADGEHGERIRQGVVFAITGPPNAGKSSLLNW 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+   GTTRD L +   L G  V   DTAG+RETDD +E EG++R    V+ 
Sbjct: 243 LTGRDTAIVSSKAGTTRDALEVACILAGIKVTFVDTAGLRETDDEIEAEGVRRALFHVKQ 302

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSD---LYSTYTEEYDHLISSFTGEGLEELI 355
           AD +L +   N   +  FP   D + IG K+D   +      +    IS  TGEGL EL 
Sbjct: 303 ADCVLQMFPANEPPDDVFP---DAVLIGNKADIGEIPKVIQGKNVRAISLKTGEGLPELY 359

Query: 356 N----KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
                K++ + +      P    +  RH   + + V+ L  A   +     ++  E LRL
Sbjct: 360 TFLQRKVEELTAASISGAPLL--TRARHKAGVQEAVQCLHAALQQDWP---ELRGEELRL 414

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG++TG V VE LLD IF +FCIGK
Sbjct: 415 AMRALGRLTGHVGVEDLLDTIFGQFCIGK 443


>gi|260553777|ref|ZP_05826047.1| tRNA modification GTPase mnmE [Acinetobacter sp. RUH2624]
 gi|260405081|gb|EEW98581.1| tRNA modification GTPase mnmE [Acinetobacter sp. RUH2624]
          Length = 454

 Score =  285 bits (730), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 172/455 (37%), Positives = 263/455 (57%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
             + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 5   QSQTTIAAIATPPGRGGVGVIRLSGPKAYDMAQKLTQKNLPEARMAGFRKFYDADGSIMD 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK
Sbjct: 65  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 123

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF EEE
Sbjct: 124 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 183

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 184 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 242

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VEKEGI+R   E+E ADL+
Sbjct: 243 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 302

Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348
           LL+ ++N         +  F ++I+    + IG K DL     E  D     H+  S   
Sbjct: 303 LLVYDLNQGDDPLQLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEIGDYQGFRHITVSAKQ 362

Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           E G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 363 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 420 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|90421815|ref|YP_530185.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris BisB18]
 gi|122477629|sp|Q21CM0|MNME_RHOPB RecName: Full=tRNA modification GTPase mnmE
 gi|90103829|gb|ABD85866.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris BisB18]
          Length = 449

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 257/455 (56%), Gaps = 21/455 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  ++TIFA+S+G  P+A++I+R+SGP    V E I  +  P PR+A          + 
Sbjct: 1   MHSRQQTIFALSSGRPPAALAIVRVSGPEAAIVLERIAGRLPP-PRQAMRALLHDASAQP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ FP+P S TGED AEFH+HGG AV++ ++  +    NLR A PGEF+RRAFEN
Sbjct: 60  IDDAIVLWFPAPRSATGEDVAEFHIHGGRAVLSAVIAAIGTNENLRAAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++TE QRR ++  + G L      W  ++    + +EA +DF++
Sbjct: 120 GKLDLTEAEGLDDLIHADTERQRRQALRQLQGLLGDRARDWRGEIIAASALVEAAIDFAD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV +         I  L ++I   ++Q    E +R+G  + I G  N GKS+L N LA
Sbjct: 180 EGDVPDELIAPAKAKIEILLDEIEDVLAQEGRSEKLRDGLVVAITGPPNVGKSTLMNQLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRD++ + LDL+GY V + DTAGIRE  D VE+EG++R       AD
Sbjct: 240 RREVAIVSPHAGTTRDIIEVHLDLDGYPVTVIDTAGIREAIDPVEQEGVRRARSRAAEAD 299

Query: 301 LILLLKEINS--------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSF 346
           L L L +  +        +  ++  +N  F  +  K D+    T E          IS+ 
Sbjct: 300 LRLWLVDAQAAGDGEDALRAWMAQGQN-GFWVVRNKVDVAGEPTGELSATGWPCFSISAA 358

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDII 405
            G G+ ELI  +    +         I +  RH   L QT   L  A  L E+   +++I
Sbjct: 359 NGRGVAELIAALGKFAAAHLGGESALI-TRARHRDLLRQTADALGRAIDLPEQ---VELI 414

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A+  LG++ G VDVE +LD+IF +FC+GK
Sbjct: 415 AEELRIAAHRLGQLLGRVDVEDILDVIFREFCVGK 449


>gi|296114339|ref|ZP_06832993.1| tRNA modification GTPase TrmE [Gluconacetobacter hansenii ATCC
           23769]
 gi|295979100|gb|EFG85824.1| tRNA modification GTPase TrmE [Gluconacetobacter hansenii ATCC
           23769]
          Length = 431

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 165/442 (37%), Positives = 251/442 (56%), Gaps = 24/442 (5%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-----GRILD 62
           IFA++TGA  +AI+++R+SG  C  +   +C    P PR+ASLR  +  D     G +LD
Sbjct: 5   IFALATGAGRAAIAVMRISGAGCDAILRSLCGGL-PEPRRASLRGIWRRDADAGPGVLLD 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + +++ FP P S+TGEDSAE H+H G AV+ G+ + L  +   R A PGEF+RRAF  G+
Sbjct: 64  RAVVLWFPGPNSYTGEDSAELHLHAGPAVIAGVADALVAL-GARPAEPGEFTRRAFAGGR 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE +ADLI +ETE QRR ++    G  S LY  W  +L    +  EA +DF +E 
Sbjct: 123 LDLVQAEGIADLIDAETEAQRRQALAQADGAQSRLYEDWAARLRTALAHQEALIDFPDE- 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+       +L  +  L++++ +++  G  GE +R G    I+G  N GKSSL N LA++
Sbjct: 182 DLPPEVEDALLGTLAQLRDEMQAYLDDGSQGERLRRGLVFTIVGEPNVGKSSLLNTLAQR 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIV+   GTTRD + + + L    V + DTAG+RETDD +E EG++R    V+ AD +
Sbjct: 242 DAAIVSSRAGTTRDAIEVRIVLGDVPVIVVDTAGLRETDDEIEAEGVRRALFHVKQADCV 301

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           +    + S   +      D I +  + D  +         IS  TGEG+E L    + +L
Sbjct: 302 I---HVFSGAAVPDKVGPDSIMVCNRIDEVAAPPGIMG--ISVRTGEGMEAL----RDVL 352

Query: 363 SNKFKKLP---FSIP-SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           + + + L     + P +  RH   + +T  +L  A+    D   ++  E +RLA  +LG+
Sbjct: 353 AQRARDLTQGRAAAPLTRARHRAAIEETAHHLNRAA---DDAWPEVRGEEMRLAMRALGR 409

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           +TG V VE LLD +F +FCIGK
Sbjct: 410 LTGAVGVEALLDTVFGQFCIGK 431


>gi|329664338|ref|NP_001193147.1| tRNA modification GTPase GTPBP3, mitochondrial [Bos taurus]
 gi|297476305|ref|XP_002688588.1| PREDICTED: GTP binding protein 3 (mitochondrial) [Bos taurus]
 gi|296486093|gb|DAA28206.1| GTP binding protein 3 (mitochondrial) [Bos taurus]
          Length = 521

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 180/494 (36%), Positives = 264/494 (53%), Gaps = 67/494 (13%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGP+     + +   +  P  RKA LR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALQSLTAPRDLPLARKACLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DFSE++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGDLCRGWAETLTKALAHVEAYIDFSEDDNL 214

Query: 185 Q------------------------------NFSSKEVLNDILFLKNDISSHISQGKLGE 214
           +                              +F      +++  L+  +  H+   + G+
Sbjct: 215 EEGVLDQGGSPWGWEAETSGIQPPQVLLLSLSFPPSTADSEVRKLEVALGVHLRDARRGQ 274

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
            +R+G  +V+ G  NAGKSSL N L++K V+IV+  PGTTRDVL   +DL G+   +SDT
Sbjct: 275 RLRSGAHVVVAGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPALLSDT 334

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF------------ 322
           AG+RE    VE+EG++R    +E ADLIL + + +   +++ P + +F            
Sbjct: 335 AGLREGVGPVEQEGVRRAQKRLEQADLILAVLDAS---DLASPASCNFLDTVVIPAGARN 391

Query: 323 --------IFIGTKSDLYST-----YTEEYDH-LISSFTGEGLEELINKIKSILSNKFKK 368
                   + +  KSDL        + +   H L+S  TGEGL+ L+  +K  L+     
Sbjct: 392 PNGSRQRLLLVLNKSDLLPAGRSDLHPDLPSHLLLSCLTGEGLDGLLEALKKELAALCGD 451

Query: 369 LPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
            P + P  +  RH +HL   +  L       KD  L + AE LR+A   L  +TG    E
Sbjct: 452 -PSTGPLLTRSRHQHHLRGCLDALGQYK-QAKD--LALAAEALRVARGHLSHLTGGGGTE 507

Query: 427 QLLDIIFSKFCIGK 440
           ++LDIIF  FC+GK
Sbjct: 508 EILDIIFRDFCVGK 521


>gi|262377654|ref|ZP_06070874.1| tRNA modification GTPase TrmE [Acinetobacter lwoffii SH145]
 gi|262307413|gb|EEY88556.1| tRNA modification GTPase TrmE [Acinetobacter lwoffii SH145]
          Length = 452

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 176/461 (38%), Positives = 266/461 (57%), Gaps = 30/461 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M +   TI A++T      + +IRLSGP  +++ + + +K+ P  R A  R F+   G +
Sbjct: 1   MLNRTTTIAAIATPPGRGGVGVIRLSGPKSYEIAQQLTQKELPKARFAGFRQFYDAAGEV 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GL I FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAFEN
Sbjct: 61  MDEGLAICFPNPNSFTGEDVVELQGHGGPVIQNALLGRLLEL-GATAAKAGEFSMRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL++AE++ADLI + ++   R ++  + G  S+     +++L H+R  +EA +DF E
Sbjct: 120 GKLDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKVNAVLEQLIHLRLHVEAAIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSSLF 236
           EE +   +  ++LN    L + +SS ++Q     + G+++R G ++VI G  NAGKSSL 
Sbjct: 180 EE-IDFLADGKILN----LLDGVSSAVTQVQQSARQGQLLREGLQVVIAGKPNAGKSSLL 234

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA  + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+
Sbjct: 235 NALAGIERAIVTDIAGTTRDVLHEKITLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEI 294

Query: 297 ENADLILLLKEINSKKEI------SFPKNID---FIFIGTKSDLYSTYT-----EEYDHL 342
           E ADL+LL+ +++  ++        F ++I+    + IG K DL            + H+
Sbjct: 295 EQADLLLLVYDLSQGEDPLQLAQEYFAEHIEPKRLMLIGNKCDLTGAEAVIGDLNGFRHI 354

Query: 343 ISSFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKD 399
             S   E G++ LI  I +     F+    +  +  RHL  + +T  YL  A   L   +
Sbjct: 355 AVSAKQETGVQALIEAITA--HAGFQPEEDTFIARTRHLDAMKRTQLYLAEACEQLVVYN 412

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 413 AG-ELVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 452


>gi|209966078|ref|YP_002298993.1| tRNA modification GTPase TrmE [Rhodospirillum centenum SW]
 gi|209959544|gb|ACJ00181.1| tRNA modification GTPase TrmE [Rhodospirillum centenum SW]
          Length = 439

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 188/453 (41%), Positives = 265/453 (58%), Gaps = 35/453 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-GLDGRILDKG 64
           +TIFA +T      + ++RLSGP        +  +  P PR+A+L        G + D+ 
Sbjct: 4   DTIFAPATAPGRGGVQVVRLSGPLAGPALVRLSGRLPP-PRQATLASLHDPAGGEVFDRA 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LL+ FP+P SFTGED AE H+HGG AV+    E L  +  LR+A PGEFSRRAFE+GK+D
Sbjct: 63  LLLWFPAPASFTGEDVAELHLHGGRAVLAAAAEALTAL-GLRVAEPGEFSRRAFEHGKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE++ADL+++ET  QRR ++  M G L  LY  W  +L    + +EA++DF EE+  
Sbjct: 122 LTEAEAIADLVAAETAAQRRQALRQMDGALGRLYEDWRHRLVRALAHLEAEIDFPEEDLP 181

Query: 185 QNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                S + V+ D+L    +I++H++ G  GE +R+G  I ILG  NAGKSSL NA+A++
Sbjct: 182 GGLTDSVRPVVRDLL---AEIAAHLADGHRGERLRDGIAIAILGAPNAGKSSLLNAIARR 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           DVAIV+   GTTRDV+ + LDL GY V ++DTAG+RET D VE EGI+R       ADL 
Sbjct: 239 DVAIVSAQAGTTRDVIEVALDLGGYPVTLADTAGLRETLDAVESEGIRRALDRAARADLT 298

Query: 303 LLLKEINSKKEISFPKNI-----DFIFIGTKSDLYSTYTEEYDH----LISSFTGEGLEE 353
           LL+ +     +   P  +     D + +  K+DL      E        +S+ TG+GL  
Sbjct: 299 LLVFDATLPPD---PATLALAGEDALVVLNKADLAGELPSEVAGRPALAVSAATGQGLAA 355

Query: 354 LINKIKSILSNKFKKLPFSIPS--HKRHLYHL----SQTVRYLEMASLNEKDCGLDIIAE 407
           L+  + + +  ++   P + PS    RH   L    +   R LE A L E      + AE
Sbjct: 356 LLATLTAAVEMRYA--PAAAPSLTRARHRAALEACGASLARALE-APLPE------LAAE 406

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++RLA+ +LG+ITG VDVE LLD+IF  FCIGK
Sbjct: 407 DVRLAARALGRITGRVDVEDLLDVIFRDFCIGK 439


>gi|159045994|ref|YP_001534788.1| tRNA modification GTPase TrmE [Dinoroseobacter shibae DFL 12]
 gi|205829136|sp|A8LPC2|MNME_DINSH RecName: Full=tRNA modification GTPase mnmE
 gi|157913754|gb|ABV95187.1| tRNA modification GTPase TrmE [Dinoroseobacter shibae DFL 12]
          Length = 429

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 163/436 (37%), Positives = 248/436 (56%), Gaps = 9/436 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    S ++++R+SG   F     +     P  ++ SLR     DG ++D+ L
Sbjct: 2   DTIFALASAPGKSGVAVLRISGSRAFHAGRVLAGGL-PDAQRTSLRKLRDSDGSVIDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F SP SFTGED  EF  HG  A++  ++ EL+ +P LRLA PGEF+RRA EN ++DL
Sbjct: 61  VLAFESPNSFTGEDCVEFQTHGSPAIIAALMNELSALPGLRLAQPGEFTRRALENNRMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ ++   SGEL      W   L    + +E  +DF++EE V 
Sbjct: 121 AQVEGLADLIEAETEAQRKQALRTFSGELGQKVELWRKDLVRAMALLEVTIDFADEE-VP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                EV   +  +  ++++  +     E IR+G+++ ILG  N GKSSL N LA ++ A
Sbjct: 180 EDVYPEVQELLGRVSQNLAAESAGTHAAERIRHGFEVAILGAPNVGKSSLLNRLAGREAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + I GTTRDV+ + LDL+G  V + DTAG+RET D +E+ GI R     E+ADL ++L
Sbjct: 240 ITSSIAGTTRDVVEVRLDLDGLPVTVLDTAGLRETQDEIEQIGISRAMARAESADLRIIL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E + +         D I +  KSD+  + +E     ISS TG G++ L+  +   LS  
Sbjct: 300 IE-DGRLPSGLGVADDDILVQAKSDILPSSSE---FAISSVTGRGIDRLVKAVSHRLS-- 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVD 424
            +       +H RH   +S  V  L++A     +   ++++ E+LR A V L  + G V 
Sbjct: 354 LRAASAGTATHVRHRLAISSAVESLDLAKTKISEGFPVELVIEDLRQALVDLESLIGRVG 413

Query: 425 VEQLLDIIFSKFCIGK 440
           VEQ+LD IF+ FC+GK
Sbjct: 414 VEQVLDEIFANFCLGK 429


>gi|86136756|ref|ZP_01055334.1| tRNA modification GTPase [Roseobacter sp. MED193]
 gi|85826080|gb|EAQ46277.1| tRNA modification GTPase [Roseobacter sp. MED193]
          Length = 428

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 171/439 (38%), Positives = 252/439 (57%), Gaps = 16/439 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGRILDKG 64
           +TIFA+++    + +S+IR+SGP+   V   IC +  P P K   LR     DG  LD+ 
Sbjct: 2   DTIFALASAQGKAGVSVIRISGPNALGVANQICDR--PLPAKGRGLRRLIDFDGSQLDEA 59

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F +P SFTGE+  EF VHG  AVV+ +L+ L + P+LRLA PGEF+RRA ENGK+D
Sbjct: 60  LVLSFAAPASFTGENIVEFQVHGSTAVVSAVLDRLTRTPDLRLAEPGEFTRRALENGKLD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L + E+LADLI +ETE QR+ +   +SG L  L  +W   L    S IE  +DF+ +EDV
Sbjct: 120 LAQVEALADLIDAETEAQRKQAQVVLSGGLGQLAERWRVDLIRAASLIEVTIDFA-DEDV 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + EV   +  +  D+ +     K+ E IR+G+++ I+G  N GKS+L N LA ++ 
Sbjct: 179 PVDVTPEVTTLLNSVAQDLEAETKGVKIAERIRDGFEVAIIGAPNVGKSTLLNMLAGREA 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI ++  GTTRDV+ + +DL G  V + DTAG+R+TDD VE  GI+      E ADL + 
Sbjct: 239 AITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRDTDDHVEGIGIELARKRAEQADLRVF 298

Query: 305 LKEINSKKEISF-PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L E +   ++   P +   I +  K+D+     E  D  IS  TG+G++ L+  I   L 
Sbjct: 299 LVEPDEAIDLEMRPGD---IRLRPKADMR----EISDGSISGKTGQGVDRLVTHISDTLK 351

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITG 421
           ++  ++   + +  RH   +   +  L  A L  +      +I AE++R A  SL  + G
Sbjct: 352 DRSTQV--GVATRARHRDMMLAALNSLSEAQLVLQRGAEFYEIAAEDIRSAVRSLEMLVG 409

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            V VE LLD IFS FC+GK
Sbjct: 410 RVGVENLLDEIFSSFCLGK 428


>gi|262371178|ref|ZP_06064499.1| tRNA modification GTPase mnmE [Acinetobacter johnsonii SH046]
 gi|262313908|gb|EEY94954.1| tRNA modification GTPase mnmE [Acinetobacter johnsonii SH046]
          Length = 454

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 174/459 (37%), Positives = 270/459 (58%), Gaps = 30/459 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + + TI A++T      + +IRLSGP  +++ + + +K  P  R A  R F+   G ++D
Sbjct: 5   YNRTTIAAIATPPGRGGVGVIRLSGPKSYEIAQALTQKDLPKARFAGFRQFYDASGEVMD 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +GL I FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK
Sbjct: 65  EGLAICFPNPNSFTGEDVVELQGHGGPVIQNALLGRLLELGAIA-AKAGEFSMRAFENGK 123

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     +++L H+R  +EA +DF EEE
Sbjct: 124 LDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKVNHVLEQLIHLRLHVEAAIDFPEEE 183

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            +      ++LN    L + +++ ++Q     + G+++R G ++VI G  NAGKSSL NA
Sbjct: 184 -IDFLVDGKILN----LLDGVTAAVNQVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA  + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E 
Sbjct: 239 LAGIERAIVTDIAGTTRDVLHEKITLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQ 298

Query: 299 ADLILLLKEINSKKEI------SFPKNID---FIFIGTKSDLYST--YTEEYD---HLIS 344
           ADL+LL+ +++  ++        F ++I+    + IG K DL  T  + E+++   H++ 
Sbjct: 299 ADLLLLVYDLSQGEDPLKLAQEYFAEHIEPKRLMLIGNKCDLMETTSHIEDFNGFRHIMV 358

Query: 345 SFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401
           S   E G++ LI  I +     F+    +  +  RHL  + +T  YL  A   L   + G
Sbjct: 359 SAKQETGVQALIEAITA--HAGFQPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVYNAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LRLA  +L +ITG    + LL  IF  FCIGK
Sbjct: 417 -ELVAESLRLAQNALSEITGDFSADDLLGKIFGSFCIGK 454


>gi|50086618|ref|YP_048128.1| tRNA modification GTPase TrmE [Acinetobacter sp. ADP1]
 gi|81392037|sp|Q6F6L1|MNME_ACIAD RecName: Full=tRNA modification GTPase mnmE
 gi|49532592|emb|CAG70306.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Acinetobacter sp. ADP1]
          Length = 462

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 177/459 (38%), Positives = 265/459 (57%), Gaps = 34/459 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           + TI A++T      + +IRLSGP    + E +  K  P  R A  R F+  +G ++D+G
Sbjct: 15  QTTIAAIATPPGRGGVGVIRLSGPKASLIAEHLTAKTLPAARMAGFRQFYDAEGLVMDEG 74

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP+P SFTGED  E   HGG  + N +LE L ++   + A  GEFS RAFENGK+D
Sbjct: 75  LVLYFPNPNSFTGEDVVELQGHGGPVIQNALLERLFEL-GAKAAKAGEFSMRAFENGKLD 133

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++AE++ADLI + ++   R ++  + G  S    Q ++KL H+R  +EA +DF EEE  
Sbjct: 134 LVQAEAIADLIDATSQAAARSAVRSLQGAFSLRINQVLEKLIHLRLHVEAAIDFPEEE-- 191

Query: 185 QNFSSKEVLND--ILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
                 + L D  IL L +D+   + Q     + G+++R G ++VI G  NAGKSSL NA
Sbjct: 192 -----IDFLADGKILALLDDVRDSVQQVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNA 246

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA  + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E 
Sbjct: 247 LAGNERAIVTDIAGTTRDVLHERISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQ 306

Query: 299 ADLILLLKEIN------SKKEISFPKNID---FIFIGTKSDLYSTYTE-----EYDHL-I 343
           ADL+LL+ +++      +  +  F ++++    I IG K DL + + E      + H+ +
Sbjct: 307 ADLLLLVYDLSEGADPLALAQEYFAEHLEPRRLILIGNKCDLMTGHPELAQYQNFRHVTV 366

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401
           S+    G++ LI+ I +     F+    +  +  RHL  + +T  +L  A   L     G
Sbjct: 367 SAKMDMGVQALIDAITA--HAGFQPEEDTFIARTRHLDAMKRTQLHLHEAREQLVVFHAG 424

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LRLA  +L +ITG    + LL  IF  FCIGK
Sbjct: 425 -ELVAESLRLAQNALSEITGEFSADDLLGKIFGSFCIGK 462


>gi|19335743|gb|AAL85492.1| GTP-binding protein isoform IV [Homo sapiens]
          Length = 524

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 178/496 (35%), Positives = 263/496 (53%), Gaps = 68/496 (13%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 Q------------------NFSSKEVLN--------------DILFLKNDISSHISQGKL 212
           +                  + S + + +              ++  L+  + +H+   + 
Sbjct: 215 EEGVLEQGGSTWWWGRKTPHISPQRLPSLSLSACLLSPTADIEVRALQVALGAHLRDARR 274

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G+ +R+G  +V+ G  NAGKSSL N L++K V+IV+  PGTTRDVL   +DL G+ V +S
Sbjct: 275 GQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLS 334

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF---------- 322
           DTAG+RE    VE+EG++R    +E ADLIL + + +   +++ P + +F          
Sbjct: 335 DTAGLREGVGPVEQEGVRRARERLEQADLILAMLDAS---DLASPSSCNFLATVVASVGA 391

Query: 323 ----------IFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKIKSILSNKF 366
                     + +  KSDL S              L+S  TGEGL+ L+  ++  L+   
Sbjct: 392 QSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLDGLLEALRKELAAVC 451

Query: 367 KKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
                  P  +  RH +HL   +  L       KD  L + AE LR+A   L ++TG   
Sbjct: 452 GDPSTDPPLLTRARHQHHLQGCLDALGHYK-QSKD--LALAAEALRVARGHLTRLTGGGG 508

Query: 425 VEQLLDIIFSKFCIGK 440
            E++LDIIF  FC+GK
Sbjct: 509 TEEILDIIFQDFCVGK 524


>gi|193082988|ref|NP_598399.2| tRNA modification GTPase GTPBP3, mitochondrial isoform IV [Homo
           sapiens]
          Length = 524

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 178/496 (35%), Positives = 263/496 (53%), Gaps = 68/496 (13%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 Q------------------NFSSKEVLN--------------DILFLKNDISSHISQGKL 212
           +                  + S + + +              ++  L+  + +H+   + 
Sbjct: 215 EEGVLEQGGSTWWWGRKTPHISPQRLPSLSLSACLLSPTADIEVRALQVALGAHLRDARR 274

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G+ +R+G  +V+ G  NAGKSSL N L++K V+IV+  PGTTRDVL   +DL G+ V +S
Sbjct: 275 GQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLS 334

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF---------- 322
           DTAG+RE    VE+EG++R    +E ADLIL + + +   +++ P + +F          
Sbjct: 335 DTAGLREGVGPVEQEGVRRARERLEQADLILAMLDAS---DLASPSSCNFLATVVASVGA 391

Query: 323 ----------IFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKIKSILSNKF 366
                     + +  KSDL S              L+S  TGEGL+ L+  ++  L+   
Sbjct: 392 QSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLDGLLEALRKELAAVC 451

Query: 367 KKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
                  P  +  RH +HL   +  L       KD  L + AE LR+A   L ++TG   
Sbjct: 452 GDPSTDPPLLTRARHQHHLQGCLDALGHYK-QSKD--LALAAEALRVARGHLTRLTGGGG 508

Query: 425 VEQLLDIIFSKFCIGK 440
            E++LDIIF  FC+GK
Sbjct: 509 TEEILDIIFQDFCVGK 524


>gi|255320708|ref|ZP_05361885.1| tRNA modification GTPase TrmE [Acinetobacter radioresistens SK82]
 gi|255302324|gb|EET81564.1| tRNA modification GTPase TrmE [Acinetobacter radioresistens SK82]
          Length = 451

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 175/457 (38%), Positives = 262/457 (57%), Gaps = 34/457 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      + +IRLSGP  + + E + ++  P  R A+ R F+  +  ++D+GL+
Sbjct: 6   TIAAIATPPGRGGVGVIRLSGPKAYMIAEQLTQRSLPKARMAAFRQFYDAEQLVMDEGLV 65

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK+DL+
Sbjct: 66  ICFPNPYSFTGEDVVELQGHGGPVIQNALLSRLFELGAIA-AKAGEFSMRAFENGKLDLV 124

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE++ADLI + ++   R ++  + G  S      ++KL H+R  +EA +DF EEE    
Sbjct: 125 QAEAIADLIDATSQAAARSAVRSLQGAFSVKVNSVLEKLIHLRLHVEAAIDFPEEE---- 180

Query: 187 FSSKEVLND--ILFLKNDISSHIS----QGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
               + L D  IL L +D++S ++      + G+++R G ++VI G  NAGKSSL NALA
Sbjct: 181 ---IDFLADGKILKLLDDVASSVTLVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVE+EGI+R   E+E AD
Sbjct: 238 GNDRAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEQEGIRRAIKEIEQAD 297

Query: 301 LILLLKEINSKKE-ISFPKNI--------DFIFIGTKSDLYSTYTEE-----YDHL-ISS 345
           L+LL+ +++  ++ +   +N           I IG K DL     E      + H+ +S+
Sbjct: 298 LLLLVYDLSQGEDPLKLAQNYFAEHLEPKRLILIGNKCDLIGVQPEAGKYQGFRHISVSA 357

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403
               G++ LI  I +     F+    +  +  RHL  + +T  YL  A   L +   G +
Sbjct: 358 KMETGVQTLIEAITN--HAGFQPEEDTFIARTRHLDAMKRTQAYLAEAREQLTDFHAG-E 414

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+LRLA  +L +ITG    + LL  IF  FCIGK
Sbjct: 415 LVAESLRLAQNALSEITGEFSADDLLGKIFGSFCIGK 451


>gi|262380662|ref|ZP_06073815.1| tRNA modification GTPase TrmE [Acinetobacter radioresistens SH164]
 gi|262297610|gb|EEY85526.1| tRNA modification GTPase TrmE [Acinetobacter radioresistens SH164]
          Length = 454

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 175/457 (38%), Positives = 262/457 (57%), Gaps = 34/457 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      + +IRLSGP  + + E + ++  P  R A+ R F+  +  ++D+GL+
Sbjct: 9   TIAAIATPPGRGGVGVIRLSGPKAYMIAEQLTQRSLPKARMAAFRQFYDAEQLVMDEGLV 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I FP+P SFTGED  E   HGG  + N +L  L ++  +  A  GEFS RAFENGK+DL+
Sbjct: 69  ICFPNPYSFTGEDVVELQGHGGPVIQNALLSRLFELGAIA-AKAGEFSMRAFENGKLDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE++ADLI + ++   R ++  + G  S      ++KL H+R  +EA +DF EEE    
Sbjct: 128 QAEAIADLIDATSQAAARSAVRSLQGAFSVKVNSVLEKLIHLRLHVEAAIDFPEEE---- 183

Query: 187 FSSKEVLND--ILFLKNDISSHIS----QGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
               + L D  IL L +D++S ++      + G+++R G ++VI G  NAGKSSL NALA
Sbjct: 184 ---IDFLADGKILKLLDDVASSVTLVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVE+EGI+R   E+E AD
Sbjct: 241 GNDRAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEQEGIRRAIKEIEQAD 300

Query: 301 LILLLKEINSKKE-ISFPKNI--------DFIFIGTKSDLYSTYTEE-----YDHL-ISS 345
           L+LL+ +++  ++ +   +N           I IG K DL     E      + H+ +S+
Sbjct: 301 LLLLVYDLSQGEDPLKLAQNYFAEHLEPKRLILIGNKCDLIGVQPEAGKYQGFRHISVSA 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403
               G++ LI  I +     F+    +  +  RHL  + +T  YL  A   L +   G +
Sbjct: 361 KMETGVQTLIEAITN--HAGFQPEEDTFIARTRHLDAMKRTQAYLAEAREQLTDFHAG-E 417

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+LRLA  +L +ITG    + LL  IF  FCIGK
Sbjct: 418 LVAESLRLAQNALSEITGEFSADDLLGKIFGSFCIGK 454


>gi|254515875|ref|ZP_05127935.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR5-3]
 gi|219675597|gb|EED31963.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR5-3]
          Length = 458

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 176/456 (38%), Positives = 255/456 (55%), Gaps = 23/456 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A++TG     + IIRLSGP  F V + +        R+A         G +LD+
Sbjct: 7   DSDTITAIATGPGAGGVGIIRLSGPKAFSVAQAVTGVTAK-ARQAHYVQIHDRHGDVLDQ 65

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGED AE H HGG  ++  +L E   +   R A PGEFS+RAF N KI
Sbjct: 66  GLLLQFPGPHSFTGEDVAELHCHGGPVLLRTVLRECIHL-GARQAAPGEFSQRAFLNNKI 124

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE++ADLISS TE   R +   +SG  S+     +++L  +R FIEA +DF EEE 
Sbjct: 125 DLVQAEAIADLISSSTEAAARSASRSLSGAFSTQVDALLEQLIRLRVFIEAAIDFPEEE- 183

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +VL  +  ++  I S ++  + G  +R+G K+VI G  NAGKSSL N LA++D
Sbjct: 184 IDFIAESDVLERLESIEASIDSLLAGARRGRTLRDGLKLVIAGAPNAGKSSLLNQLAEQD 243

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDIPGTTRDVL   + ++G  + I DTAG+R++ D +E+EGI+R   E+++AD IL
Sbjct: 244 SAIVTDIPGTTRDVLREYVQIDGLPLHIVDTAGLRDSADAIEQEGIRRARTEMQSADHIL 303

Query: 304 LL---KEINSKKEIS---------FPKNIDFIFIGTKSDLYSTYT------EEYDHLISS 345
           L+    +IN+ K+ +          P  +    I  K DL  T        +  +  +S+
Sbjct: 304 LVIDSSQINNTKDSTTLIAAYKGDLPPAVPITLIRNKCDLSETPAFIDRDKDVTEISLSA 363

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDI 404
            +G+G+  L   + S  +           + +RH+  L     +L       K  G  ++
Sbjct: 364 RSGDGIALLRQHLLSA-AGMSDSDSSDFSARERHVLALEDCAHHLRQGLFQLKQHGAAEL 422

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           IAE+LR A  SLG ITG    ++LL  IFS FCIGK
Sbjct: 423 IAEDLRYAQDSLGSITGSFSSDELLGEIFSSFCIGK 458


>gi|253991869|ref|YP_003043225.1| tRNA modification GTPase TrmE [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783319|emb|CAQ86484.1| trna modification gtpase trme [Photorhabdus asymbiotica]
          Length = 454

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 170/455 (37%), Positives = 259/455 (56%), Gaps = 25/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SGP   QV E +  K  P PR A    F  +D R+LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGPKAAQVAEVVLGKL-PKPRYADYLPFRDVDNRVLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I FP P SFTGED  E   HGG  +++ +L+ +  +P +R+ANPGEFS RAF N K+DL
Sbjct: 64  AIYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIANPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M  + G  S+   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSTQVHQMVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++  ++  +   +    SQ + G ++R G K+VI G  NAGKSSL NALA +D A
Sbjct: 183 FLSDGKIEANLDNVIAKLDRVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFM 302

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTG 348
            +  +   +             P+++    +  K+D+ +     T    Y  + +S+ +G
Sbjct: 303 VDSTTTDAVEPVEIWPEFMARLPESLPITVVRNKTDMTNEETSITEVRGYSLIRLSAHSG 362

Query: 349 EGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           EG++ L + +K  +  N   +  F   + +RHL  L+    +L+     L     G +++
Sbjct: 363 EGIDLLRDHLKETMGFNSNTEGGFL--ARRRHLQALNTAAEHLQQGHEQLVVARSG-ELL 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 420 AEELRLAQQTLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|254461121|ref|ZP_05074537.1| tRNA modification GTPase TrmE [Rhodobacterales bacterium HTCC2083]
 gi|206677710|gb|EDZ42197.1| tRNA modification GTPase TrmE [Rhodobacteraceae bacterium HTCC2083]
          Length = 430

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 176/440 (40%), Positives = 251/440 (57%), Gaps = 16/440 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T    + +S+IR+SG       E  C+   P   KA+LR    L G ++D+ L
Sbjct: 2   DTIFALATAQGKAGVSVIRISGARARDAGEAFCENL-PVSHKAALRNLTDLQGTLIDQAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F   +SFTGE   EFH+HG  A+V  ++E L  +  LRLA PGEF+RRA ENGK+DL
Sbjct: 61  VLTFEDRKSFTGEPVVEFHLHGSTAIVARMMELLGGVVGLRLAEPGEFTRRALENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ ++  ++G+L      W   L    S +EA +DF+ +EDV 
Sbjct: 121 AQVEGLADLIDAETESQRKQAVRVLAGDLGRTAEIWRSDLIRAASLLEATIDFA-DEDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EVL  +   +  I       K  E IR G+++ I+G  N GKS+L N++A +D A
Sbjct: 180 IDVTPEVLVLLERSERAIIKEAEGVKTAERIRAGFEVAIIGPPNVGKSTLLNSIAGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRDV+ + LDL G  V I DTAG+RET+D VEK GI R     E ADL + L
Sbjct: 240 ITSEYAGTTRDVIEVKLDLNGLPVTILDTAGLRETEDFVEKIGIDRALDRAEKADLRVFL 299

Query: 306 KEINSKKEISFP---KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           K   S  E  FP   ++ D   +G K+DL+   T      +S  TGEG++ L+  I   L
Sbjct: 300 K---STVEEQFPIEQRSGDIEMLG-KADLFVDRTRRS---VSGKTGEGVDHLVAAISKTL 352

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKIT 420
            +  +     I + +RH   L  + +YL  A   L+      D++AE++R A  +L  + 
Sbjct: 353 LD--RSASAGIATRERHRQALLSSQKYLSAAKEGLDFGPDYYDLVAEDMRSAIRALNSLI 410

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G VDVE LLD IFS FC+GK
Sbjct: 411 GHVDVENLLDEIFSSFCLGK 430


>gi|119605005|gb|EAW84599.1| GTP binding protein 3 (mitochondrial), isoform CRA_c [Homo sapiens]
          Length = 498

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 171/450 (38%), Positives = 253/450 (56%), Gaps = 24/450 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 57  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 116

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 117 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 176

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR-----SFIEADLDFS 179
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT        + +EA +DF 
Sbjct: 177 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKASPPFALAHVEAYIDFG 236

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+++++    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L
Sbjct: 237 EDDNLEEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLL 296

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           ++K V+IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R     E+ 
Sbjct: 297 SRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRAR---ESC 353

Query: 300 D-LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLE 352
           + L  ++  + ++      + +  +    KSDL S              L+S  TGEGL+
Sbjct: 354 NFLATVVASVGAQSPSDSSQRLLLVL--NKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLD 411

Query: 353 ELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
            L+  ++  L+          P  +  RH +HL   +  L       KD  L + AE LR
Sbjct: 412 GLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-QSKD--LALAAEALR 468

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A   L ++TG    E++LDIIF  FC+GK
Sbjct: 469 VARGHLTRLTGGGGTEEILDIIFQDFCVGK 498


>gi|198431401|ref|XP_002128736.1| PREDICTED: similar to GTP binding protein 3 [Ciona intestinalis]
          Length = 544

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 179/476 (37%), Positives = 271/476 (56%), Gaps = 46/476 (9%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLR-YFFGLDGRIL 61
            + TI+AVS+G     +SIIR+SG         + K+K  P PRKA ++  +  +   +L
Sbjct: 76  HQSTIYAVSSGFGKCGVSIIRVSGKCSPNALLKLTKRKSLPGPRKAIVQPIYHPVSNLML 135

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L++ FP P SFTGED  EF VHGG AV+  +L  L+ +  LR A  G+++++AF NG
Sbjct: 136 DRSLVLWFPRPSSFTGEDVCEFQVHGGPAVIASVLNALSCITGLRPAEAGDYTKQAFLNG 195

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL E E L DLI +ETE QRR ++  M G L+SLY  W +++    + +EA +DF E+
Sbjct: 196 KLDLTEVEGLGDLIHAETEAQRRQALHQMEGSLASLYKGWSNEVLRCVAHLEAFIDFEED 255

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+       +  +   + + I  H+S  + GE +R+G ++ I+G  N GKSSL NA+ +
Sbjct: 256 EDLDPDIICNIRLNTTKMISKIQHHLSDERRGERLRDGVRVAIIGKPNVGKSSLLNAVTQ 315

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +  AIV+ IPGTTRDV+   LD+ G+ V ISDTAG+R +  ++EK+G+ R +++ + ADL
Sbjct: 316 RPAAIVSPIPGTTRDVIETALDISGFPVLISDTAGLRRSHGVIEKQGVDRAYVKAKEADL 375

Query: 302 ILLL---KEINSKKEISFPKNI---------------DFIFIGTKSDLYST--------Y 335
           ++L+   +E+N+K   +F + I               + I I  KSDL  +         
Sbjct: 376 VVLVVNSQEVNNKDLNNFSEFIKQHAHELHLEKTSLENLIVILNKSDLLESEKLKKIRDL 435

Query: 336 TEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFS-----IPS--HKRHLYHLSQT 386
             EY    LIS  T +G ++L+       S + +KL         PS   +RH  HL+  
Sbjct: 436 QSEYASVLLISCKTLDGFQDLLQ----TFSKRLEKLCGGSCVGETPSVTQQRHRLHLNNC 491

Query: 387 VRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           V +LE  +  LN KD  + I AE  R+A   LG+I+G +  E +LD+IF  FCIGK
Sbjct: 492 VSFLEKGNQFLN-KD--VVIAAEYFRMALTELGRISGKIGSEDILDVIFKDFCIGK 544


>gi|73986022|ref|XP_541954.2| PREDICTED: similar to GTP binding protein 3 (mitochondrial) isoform
           V isoform 1 [Canis familiaris]
          Length = 492

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 180/461 (39%), Positives = 255/461 (55%), Gaps = 30/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR-ILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R A LR       R  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRSLTASRDLPPARSACLRLLSHPHSREPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCAEFHVHGGSAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W   LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCHGWAKTLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    +   + +  L+  +S+H+   + G+ +R+G  IV+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLERANSQVRELELALSAHLRDARRGQRLRSGAHIVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+   +SDTAG+RE    VE+EG++R    +E ADLIL 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGAGPVEQEGVRRARQRLEQADLILA 334

Query: 305 L---KEINSKKEISFPKNI--------------DFIFIGTKSDLYSTYTEEYDH------ 341
           +    ++ S    SF   +                + +  KSDL      +         
Sbjct: 335 VLDATDLASPSSRSFLDTVVVPAGAGSPSENSQRLLLVLNKSDLLPRGGPDLSPHLPPHL 394

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKD 399
           L+S  TGEGL+ L+  ++  L+          P  +  RH +HL   +  L       KD
Sbjct: 395 LLSCLTGEGLDGLLEALRKELAEVCGDPSTGPPLLTRARHQHHLQGCLDALSHYK-QTKD 453

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + AE LRLA   L +ITG  D E++LDIIF  FC+GK
Sbjct: 454 --LALAAEALRLARGHLARITGGGDTEEILDIIFRDFCVGK 492


>gi|301753859|ref|XP_002912763.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
           isoform 1 [Ailuropoda melanoleuca]
          Length = 491

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 181/461 (39%), Positives = 261/461 (56%), Gaps = 31/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYF-FGLDGRILDKG 64
           T+FA+S+G     I++IR SGP+       +   +  P  R A LR       G  LD+ 
Sbjct: 35  TVFALSSGQGRCGIAVIRTSGPASGHALRSLTAPQDLPPARSACLRLLSHPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W   LT   + +EA +DFSE++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRAWAKTLTKALAHVEAYIDFSEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    + V + +  L+  +S+H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLERVDSQVRELELALSAHLRDARRGQRLRSGAHVVVAGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+   +SDTAG+RE    VE+EG++R    +E ADLIL 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 334

Query: 305 L---KEINSKKEISF------------PK--NIDFIFIGTKSDLYSTYTEEYDH------ 341
           +    ++ S    +F            PK  +   + +  KSDL      +         
Sbjct: 335 VLDASDLASPSSCNFLDTIVTPAGAGNPKENSQRLLLVLNKSDLLPRGGPDPSPNLPPHL 394

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKD 399
           L+S  TGEGL+ L+  ++  L+      P + P  +  RH +HL   +  L       KD
Sbjct: 395 LLSCLTGEGLDGLLEALRKELAEVCGD-PSTGPLLTRARHQHHLQGCLDALGHYK-QTKD 452

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + AE LRLA   LG+ITG    +++LDIIF  FC+GK
Sbjct: 453 --LALAAEALRLARGHLGRITGGGGTDEILDIIFRDFCVGK 491


>gi|258543708|ref|YP_003189141.1| tRNA modification GTPase TrmE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634786|dbj|BAI00762.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637842|dbj|BAI03811.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640896|dbj|BAI06858.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643951|dbj|BAI09906.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO
           3283-22]
 gi|256647006|dbj|BAI12954.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO
           3283-26]
 gi|256650059|dbj|BAI16000.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO
           3283-32]
 gi|256653049|dbj|BAI18983.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656103|dbj|BAI22030.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO
           3283-12]
          Length = 443

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 172/448 (38%), Positives = 251/448 (56%), Gaps = 21/448 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF---GLDGR 59
             ++TIFA+STG   +AI+++R+SG     +   +C K  P  RKA LR  +    +   
Sbjct: 7   QAEDTIFALSTGIERAAIAVLRVSGAGSRDILLRVCGKV-PDARKAVLRKIWTNASVQDD 65

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ L++ FP P S+TGED  E H+H G A++  + E L      R A PGEF+RRAF 
Sbjct: 66  LLDEALVLWFPGPRSYTGEDGFELHLHAGPAIIRAVSEALVNA-GARPAEPGEFTRRAFV 124

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL+EAE +ADL+++ET+ QR+L++    G LS LY  W ++L  + +F EA +DF 
Sbjct: 125 NGRMDLVEAEGIADLVAAETDGQRKLALAQADGALSHLYSGWSERLKKLLAFQEALIDFP 184

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +E D+       +  +I  L++++  H++ G+ GE IR G    I G  NAGKSSL N L
Sbjct: 185 DE-DLPPEVEDGINQEIQKLQSEMQQHVADGEHGERIRQGVVFAITGPPNAGKSSLLNWL 243

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIV+   GTTRD L +   L G  V   DTAG+RETDD +E EG++R    V+ A
Sbjct: 244 TGRDTAIVSSKAGTTRDALEVACILAGIKVTFVDTAGLRETDDEIEAEGVRRALFHVKQA 303

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSD---LYSTYTEEYDHLISSFTGEGLEELI- 355
           D +L +   N   +  FP     I IG K+D   +  T   +    IS   G GL EL  
Sbjct: 304 DCVLQMFPANEAPDDVFPGA---ILIGNKADIGKIPKTIQGKPVLAISLKKGNGLPELYA 360

Query: 356 ---NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
               K++ + +      P    +  RH   + + V+ L+ A   +     ++  E LRLA
Sbjct: 361 FLKRKVEELTAASTSGAPLL--TRARHKAGVLEAVQCLQAALQQDWP---ELRGEELRLA 415

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +LG++TG V VE LLD IF +FCIGK
Sbjct: 416 MRALGRLTGHVGVEDLLDTIFGQFCIGK 443


>gi|296233236|ref|XP_002761925.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 2
           [Callithrix jacchus]
          Length = 471

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 171/444 (38%), Positives = 250/444 (56%), Gaps = 17/444 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     +++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGVAVIRTSGPASGHALRILTAPRDLPPARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L  L  +P LR A  GEF+RRAF +GK++
Sbjct: 95  LVLWFPGPKSFTGEDCVEFHVHGGPAVVSGVLRALGSVPGLRPAEAGEFTRRAFAHGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQANIEVRALEVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R     E+ + +  
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRAR---ESCNFLAT 331

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKI 358
           +      +  S       + +  KSDL ST             L+S  TGEGL+ L+  +
Sbjct: 332 VVASAGAQSRSSSSQRLLLVL-NKSDLLSTEGPGPGPDMPPHLLLSCVTGEGLDGLLEAL 390

Query: 359 KSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           K  L+          P  +  RH +HL   +  L       KD  L + AE LR+A   L
Sbjct: 391 KMELAAVCGDPSTGPPLLTRARHQHHLQGCLDALGHYK-QSKD--LALAAEALRVARGHL 447

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            ++TG    E++LDIIF  FC+GK
Sbjct: 448 TRLTGGGGTEEILDIIFRDFCVGK 471


>gi|295691564|ref|YP_003595257.1| tRNA modification GTPase TrmE [Caulobacter segnis ATCC 21756]
 gi|295433467|gb|ADG12639.1| tRNA modification GTPase TrmE [Caulobacter segnis ATCC 21756]
          Length = 446

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 179/456 (39%), Positives = 263/456 (57%), Gaps = 33/456 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T A  +A++++R+SGP+  +  E +  +  P PR A+LR     DG  LD+ L
Sbjct: 3   DTIFALATAAGRAAVAVVRISGPATLRTVEALAGRA-PAPRMAALRKLRH-DGVELDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P S+TGEDSAEFHVHGG AVV   L        LRLA PGEF+RRAFENGK+DL
Sbjct: 61  VLRFEGPASYTGEDSAEFHVHGGRAVVE-ALLSALSGLGLRLAEPGEFTRRAFENGKLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE +ADLI +ETE QRR ++  + G LS  Y +W D L    + +EA +DF +E D+ 
Sbjct: 120 AQAEGVADLIDAETEAQRRQALGQVGGALSQRYDRWRDLLVQSLAMLEAAVDFPDE-DLP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              ++     +  L  ++ + ++    G  +R+GY+I ++G  NAGKS+L N L ++D A
Sbjct: 179 EEVAERARPGLRVLAEELDAALADVSRGRRVRDGYRIALVGAPNAGKSTLLNGLVERDAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL- 304
           IVTD PGTTRDV+ + L L GY V I+DTAG+RET+D +E EG++R     E ADL L  
Sbjct: 239 IVTDTPGTTRDVIEVPLVLGGYRVLIADTAGLRETEDAIEAEGVRRARRWAEEADLRLWV 298

Query: 305 -----LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL-------- 351
                +K++ + +    P   D++ +  K+D+ +   +  +   + +  EGL        
Sbjct: 299 VDGFHVKQVEALESTVRPG--DWLIL-NKADIAA--ADALEEASARWVSEGLVVRQLAAR 353

Query: 352 -----EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI-- 404
                 EL   + + +        F   +  RH   LS+   YL  A     D GL++  
Sbjct: 354 QEGAVAELRTDLAAHVIEALSGAEFPAATRLRHAERLSEARDYLARAL---SDIGLEVEL 410

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE++RLA+ +L KITG VD E +L  +FS FCIGK
Sbjct: 411 AAEDVRLAARALEKITGRVDPEDVLGRVFSTFCIGK 446


>gi|242011052|ref|XP_002426271.1| GTPase mss1, putative [Pediculus humanus corporis]
 gi|212510334|gb|EEB13533.1| GTPase mss1, putative [Pediculus humanus corporis]
          Length = 694

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 175/471 (37%), Positives = 266/471 (56%), Gaps = 61/471 (12%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGRIL---D 62
           TIFA+S+G     +++IR+SGP+  +    + K K+ P PR ASL+     D + L   D
Sbjct: 21  TIFALSSGQGKCGVAVIRVSGPNAREAILKMTKCKELPKPRMASLQLI--RDPQTLEELD 78

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           KGL++ FP P+SFTGEDS EF +HGG AV+  +L  L+K+ N R+A PG+F++RAF  GK
Sbjct: 79  KGLILWFPEPKSFTGEDSCEFQIHGGPAVIESVLTALSKLSNFRMAEPGDFTKRAFHAGK 138

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL+E E L DLI +ET +QR+ ++  M G LS LY  W   L    + +EA +DFSE+E
Sbjct: 139 LDLVEVEGLGDLIHAETNLQRKQALYQMEGNLSKLYKTWRANLLKNLAHVEAYIDFSEDE 198

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +++N   + V  ++  LKN+I +H+S G+ GE +R+G K  I+G  NAGKSSL N L +K
Sbjct: 199 NIENDIIENVHKNLTVLKNEIENHLSDGRKGERLRDGIKTAIIGEPNAGKSSLLNILCQK 258

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADL 301
             AIVT IPGTTRD +++ L+L G+ + + DTAG+R    DIVE+EGI RT      +D+
Sbjct: 259 PAAIVTPIPGTTRDTISVHLNLCGFPLTLVDTAGLRSNATDIVEQEGISRTKKVTGQSDI 318

Query: 302 ILL-------LKEINSKKEISFP----------KNIDF-------------------IFI 325
           +LL       +    +   +  P          KN+D                    IF+
Sbjct: 319 LLLIIDAKMLMSHFQTTSSLHKPDILSVIKAHIKNLDLKTDCNITLESLMKNNLQKCIFV 378

Query: 326 GTKSDL--------YSTYTEEYD---HLISSFTGEGLEELINKI----KSILSNKFKKLP 370
             K DL        +  + +E +    LIS  T EG+ +L+  +    + +  N  ++ P
Sbjct: 379 LNKIDLLNNEEKEVFQAFMKENNFTFSLISCKTEEGVNQLLQSMAKTMQHVCGNPTRENP 438

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
             + ++ RH YHL+++++YL        D  + + A+ LRL+   +GKI G
Sbjct: 439 --VLTNSRHRYHLTESLKYLN-EYFKFADTDITLSAQKLRLSLRHIGKIMG 486


>gi|146278700|ref|YP_001168859.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides ATCC 17025]
 gi|205415803|sp|A4WVZ0|MNME_RHOS5 RecName: Full=tRNA modification GTPase mnmE
 gi|145556941|gb|ABP71554.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides ATCC 17025]
          Length = 428

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 163/439 (37%), Positives = 258/439 (58%), Gaps = 16/439 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI+A+++    + ++++RLSGP  ++ V  F      P  R+A+LR     +G +LD+ 
Sbjct: 2   DTIYALASARGKAGVAVLRLSGPQAYEAVAAFGVSL--PEVRRAALRRLT-WNGEVLDEA 58

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+++F    SFTGE SAE H+HG  A V+ +L+ L+++P LRLA+ GEF+RRA +NG++D
Sbjct: 59  LILLFAEGASFTGERSAEIHLHGSAAAVSSVLQALSELPGLRLADAGEFTRRALDNGRLD 118

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L + E LADL+ SETE QRR +M   SG +     +W   L    + +EA +DF+ +EDV
Sbjct: 119 LAQVEGLADLLDSETEAQRRQAMRVFSGAIGKRTERWRSDLIRAAALLEATIDFA-DEDV 177

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + EV   +  L +D+   +   ++ E IR+G+++ I+G  NAGKS+L NALA+++ 
Sbjct: 178 PVDVTPEVRGLLERLISDLKREVDGSRVAERIRDGFEVAIIGAPNAGKSTLLNALAQREA 237

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI +++ GTTRDV+ + ++L G  V + DTAG+RET D VE  GI R       ADL + 
Sbjct: 238 AITSEVAGTTRDVIEVRMNLGGLAVTLLDTAGLRETHDPVEALGIDRALTRARAADLRIF 297

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS-ILS 363
           L +  S + +      D + +  K+D   T        +S  TG+G++EL+  ++  +L+
Sbjct: 298 LLD-QSGEVVGLEPEADDLIVQGKADTRLTRGLS----VSGLTGDGIQELVEALQDRLLA 352

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITG 421
                  F   + +RH   + + +R +E A   L +     ++ AE+LRLA  +L  + G
Sbjct: 353 RTAGAGSF---TRERHRLAMERAIRAMESAHVQLMQGVPHPELAAEDLRLALRALDSLVG 409

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            VDVE LL  IFS FCIGK
Sbjct: 410 RVDVEALLGEIFSSFCIGK 428


>gi|163737994|ref|ZP_02145410.1| tRNA modification GTPase TrmE [Phaeobacter gallaeciensis BS107]
 gi|161388610|gb|EDQ12963.1| tRNA modification GTPase TrmE [Phaeobacter gallaeciensis BS107]
          Length = 430

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 172/437 (39%), Positives = 248/437 (56%), Gaps = 10/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    + +S+IRLSGP        I     P P +  LR      G  +D+ L
Sbjct: 2   DTIFALASAQGKAGVSVIRLSGPKAISTASVISGGDLPRPGRV-LRVLSDCSGARIDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+ F  P SFTGED+ EF VHG  +VV+ +L+ L +  ++RL++PGEF+RRA ENGK+DL
Sbjct: 61  LLTFTGPNSFTGEDTVEFQVHGSTSVVSAMLDLLGQFEDVRLSDPGEFTRRALENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E+LADLI +ETE QR  +   ++G L+ L  +W   L    S IE  +DF+ +EDV 
Sbjct: 121 SQVEALADLIDAETEAQRVQAQAVLAGGLADLAERWRKDLIRAASLIEVTIDFA-DEDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              +KEV   +  +  D+   I+  K+ E IR+G+++ I+G  N GKS+L NALA ++ A
Sbjct: 180 VDVTKEVKELLAGVTADLEPQIAGVKMAERIRSGFEVAIIGAPNVGKSTLLNALAGREAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRDV+ + +DL G  V + DTAG+RETDD VE  GIK      E ADL + L
Sbjct: 240 ITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETDDHVEGIGIKMAKERAEKADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E   +  I    + D I +  K+DL      +    +S  TG+G++ LI  I  +L N+
Sbjct: 300 TE--DRTAIDIDISEDDIVVAPKADLVGDGVPQ--KAVSGKTGQGIDMLIADITKVLRNR 355

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCV 423
             K+   I +  RH   +      L+ A   L       D+ AE++R A  SL  + G V
Sbjct: 356 AGKV--GIATRARHRETMKTAYDRLQSAQDVLRYGPEFYDVAAEDMRSAIRSLEMLVGRV 413

Query: 424 DVEQLLDIIFSKFCIGK 440
            VE LLD IFS FC+GK
Sbjct: 414 GVENLLDEIFSSFCLGK 430


>gi|167648978|ref|YP_001686641.1| tRNA modification GTPase TrmE [Caulobacter sp. K31]
 gi|189036195|sp|B0T6E0|MNME_CAUSK RecName: Full=tRNA modification GTPase mnmE
 gi|167351408|gb|ABZ74143.1| tRNA modification GTPase TrmE [Caulobacter sp. K31]
          Length = 447

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 163/434 (37%), Positives = 249/434 (57%), Gaps = 24/434 (5%)

Query: 24  RLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEF 83
           R+SG     +   +     P PR+A LR     DG  LD  L++ F  P S+TGED+AEF
Sbjct: 21  RISGARSADIVRGLAGDL-PKPRRAVLRQLT-RDGVALDDALVLWFQGPASYTGEDAAEF 78

Query: 84  HVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143
           HVHGG AVV  +LE LA    LRLA PGEF+RRAFENGK+DL +AE +ADLI +ETE QR
Sbjct: 79  HVHGGRAVVEAVLEALA-AEGLRLAEPGEFTRRAFENGKLDLTQAEGVADLIDAETEAQR 137

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
           R ++  + G LS  Y  W   L    + +EA +DF +EE  ++ +++     +  L+ +I
Sbjct: 138 RQALGQLGGALSQRYEAWRGLLVQALAMLEAAVDFPDEELPEDVAAR-ARPGLEALEAEI 196

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
            + +     G  +R+GY+I ++G  NAGKS+L NAL ++D AIVT  PGTTRD++ + L 
Sbjct: 197 GAALVDASRGRRVRDGYRIALVGAPNAGKSTLLNALVERDAAIVTSTPGTTRDIIEVPLT 256

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-------------INS 310
           L GY   ++DTAG+R+T+D +E EG++R       ADL L + +             +  
Sbjct: 257 LGGYKTLLADTAGLRKTEDTIEAEGVRRARAWAAGADLRLWVIDAAMFHVKQDDELAVIQ 316

Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKK 368
           + + +    ID +  G  ++L +T++E+   ++  ++    G E     + + + +    
Sbjct: 317 RGDWAVINKIDLVDAGRLAELRATFSEQGLKVVELAARKPGGAEPARAALSTHVIDALSG 376

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI--IAENLRLASVSLGKITGCVDVE 426
             F   +  RH   L++   YL+ A     D GL++  +AE++RLA+ +L +ITG +D E
Sbjct: 377 AEFPAATRIRHAESLTEARTYLQRAL---SDVGLEVELVAEDVRLAARALSRITGRIDPE 433

Query: 427 QLLDIIFSKFCIGK 440
            +LD +FS FCIGK
Sbjct: 434 DVLDRVFSSFCIGK 447


>gi|144899662|emb|CAM76526.1| thiophene and furan oxidation protein ThdF [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 435

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 164/441 (37%), Positives = 264/441 (59%), Gaps = 17/441 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-LRYFFGLDGRILDKGL 65
           TIFA+++      +++ RLSGP+   +   +  K+ P PR A+ +R   G  G  +D GL
Sbjct: 5   TIFALASAPGRGGVAVFRLSGPASADILHSLTGKR-PQPRLATRVRVRHG--GEDIDDGL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGE+  E H+HGG AV   + + L ++  LR A  GEFSRRAF N K+DL
Sbjct: 62  ALYFPAPHSFTGEEVVELHLHGGRAVAAALSQALLEL-GLRPAEAGEFSRRAFLNDKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE++ADL+ +ET  QRR +++ + G L++L   W   L    +  EA +DFS+E  + 
Sbjct: 121 TRAEAIADLVDAETAAQRRQALQQLDGGLAALVEGWRQDLIRALALTEAIIDFSDE-GIG 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +   ++VL  +  L  D+ +   +G+  E +R+G  I ILG  NAGKSSL N +A ++VA
Sbjct: 180 DDLVEDVLGQVRALMADMRAKAREGQRRERLRDGIHIAILGAPNAGKSSLMNRIAGREVA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+   GTTRDV+   LDL G+ V ++DTAG+RE  + +E EGI R     E+ADL +L+
Sbjct: 240 IVSAKAGTTRDVIETHLDLHGWPVVLADTAGLREAAEDIEAEGIARALARAESADLKMLV 299

Query: 306 KEIN--SKKEISFPKNID--FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            + +   +++      ID   I +  K+D+ +    +   ++S+ TG GL+ L+ +++S 
Sbjct: 300 FDASLLPERDAQTQAMIDEASIVVFNKADMANPVDSDAGIMVSARTGLGLDALLARLESE 359

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKI 419
           ++++F        +  RH   + +      +A+L   D    +++ AE+LR A+ ++G+I
Sbjct: 360 VADRFAVSAEPALTRARHRAAVEEC-----LAALARFDPAKPVELAAEDLRQAAQAIGRI 414

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG VDVE+LLD++F++FCIGK
Sbjct: 415 TGRVDVEELLDVVFAEFCIGK 435


>gi|56552884|ref|YP_163723.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|81820837|sp|Q5NKZ8|MNME_ZYMMO RecName: Full=tRNA modification GTPase mnmE
 gi|56544458|gb|AAV90612.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 434

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 167/444 (37%), Positives = 260/444 (58%), Gaps = 20/444 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64
           +TIFA+S+G  P+ I++IR+SG +       + +KK P  R+A LR  +  D G  LD+ 
Sbjct: 2   KTIFALSSGRPPAGIAVIRISGSAAADTACLLTRKKIPEARRAVLRNLYDPDSGEQLDQS 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LL+  P+P++ TGED  E HVHGG AV++ +L+ L K+P+LR A  GEF+RRAFENG I 
Sbjct: 62  LLLWLPAPKTVTGEDLLELHVHGGRAVIDAVLKTLEKLPDLRPAEAGEFTRRAFENGVIS 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE L DL+++ET  QRR ++    G L      W D+L  +   IEA  DF+E+ + 
Sbjct: 122 LHEAEGLGDLLTAETASQRRAALMMSGGALGRQISAWQDRLLALSGQIEASFDFAEDIEE 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGK------LGEIIRNGYKIVILGHSNAGKSSLFNA 238
               S++ L     +K+ I++ I++ +        E +R+G ++V+ G  NAGKS+L NA
Sbjct: 182 DETESRQHLA---VMKDKIAALIAEHRQFENRPTMERLRDGLRVVLAGRPNAGKSTLINA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D+AI   I GTTRDV+ +   L+G  ++ SDTAG+ E+DD++EK GI+R    +E 
Sbjct: 239 LTGQDIAITAPIAGTTRDVIEVSFALKGIPMRFSDTAGLHESDDLIEKAGIERAQRAIEE 298

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLEELIN 356
           AD++L L     + E +   + + + +  + DL   +   E+ D  +S+ TGEG++ L  
Sbjct: 299 ADILLWL----GQAEEAPKTDGEVLVLYPQIDLPERHPIPEKIDIAVSAVTGEGIDRLQE 354

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           K+  I   K       +  ++R    + +    L +A L+ +D  + IIAE +R A    
Sbjct: 355 KLVEI-GKKILPKEDEVTLNRRQRQLVKEAADSLALA-LDAED--MLIIAEAIRQACRCY 410

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            ++TG   VE +LD +FS+FCIGK
Sbjct: 411 DRLTGKAGVENMLDNLFSRFCIGK 434


>gi|88705405|ref|ZP_01103116.1| tRNA modification GTPase trmE [Congregibacter litoralis KT71]
 gi|88700495|gb|EAQ97603.1| tRNA modification GTPase trmE [Congregibacter litoralis KT71]
          Length = 457

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 179/462 (38%), Positives = 264/462 (57%), Gaps = 30/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGR 59
           M  + +TI A++TG+    + IIRLSGP  F     I +K      KA   +F  + DG+
Sbjct: 4   MVGDSDTIVAIATGSGAGGVGIIRLSGPDAFT----IARKMTATDAKARQAHFVSIVDGQ 59

Query: 60  --ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             +LD+GLL+ FP P SFTGED AE H HGG  ++  +L E       R A PGEFS+RA
Sbjct: 60  NAVLDQGLLLQFPGPHSFTGEDVAELHCHGGPVLLRTVLRECI-YHGARQATPGEFSQRA 118

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N KIDL++AE++ADLISS TE   R +   ++G  S      +++L  +R FIEA +D
Sbjct: 119 FLNNKIDLVQAEAIADLISSSTEAAARSASRSLTGSFSVQVDALLEQLIRLRVFIEAAID 178

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EEE +   +  +VL  +  L + I++ +   + G  +R+G K+VI G  NAGKSSL N
Sbjct: 179 FPEEE-IDFIAESDVLERLETLASSINALLKSARRGRTLRDGLKLVIAGAPNAGKSSLLN 237

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            LA++D AIVTDIPGTTRD+L   + ++G  + I DTAG+R++ D +E+EGI+R   E++
Sbjct: 238 QLAEQDSAIVTDIPGTTRDLLREHIQIDGLPLHIVDTAGLRDSGDAIEQEGIRRARSEMQ 297

Query: 298 NADLILLLKE------------INSKKEISFPKNIDFIFIGTKSDLY---STYT--EEYD 340
           +AD ILL+ +            + S  E   P+ +    I  K D+    +T+T  +  +
Sbjct: 298 SADHILLVVDNSGESALLDAATLVSHYEGDLPEAVPITLIRNKCDIQNIPATFTTGDINE 357

Query: 341 HLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             +S+  G+G++ L   + +       +   FS  + +RH+  L +   +L    L  KD
Sbjct: 358 ICLSALRGDGIDLLRRHLLTTAGIADTESSDFS--ARERHVLALEECAGHLAQGLLQLKD 415

Query: 400 CG-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G  ++IAE+LR A  SLG ITG    ++LL  IF  FCIGK
Sbjct: 416 HGAAELIAEDLRYAQDSLGSITGSFSSDELLGEIFGSFCIGK 457


>gi|85706893|ref|ZP_01037983.1| tRNA modification GTPase [Roseovarius sp. 217]
 gi|85668504|gb|EAQ23375.1| tRNA modification GTPase [Roseovarius sp. 217]
          Length = 428

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 164/437 (37%), Positives = 250/437 (57%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+ST    + +++IR+SGP   + C  +C    P PR+A LR      G  LD+ L
Sbjct: 2   DTIYALSTAQGKAGVAVIRVSGPLAAEACRRLCGDV-PEPRRAVLRVLRDEGGERLDQAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +++F   ESFTGE +AEF +HG +AVV  +L +L ++  LR A  GEF+RRA ENG++DL
Sbjct: 61  VLIFAENESFTGESTAEFQLHGSVAVVASVLADLGRIDGLRPAEAGEFTRRALENGRLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ ++   SG L      W   L    + +EA +DF++EE V 
Sbjct: 121 AQVEGLADLIEAETEAQRKQALRVFSGALGERCEGWRRSLIRAVALLEATIDFADEE-VP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV   I  +   + + I+   + E IR G+++ I+G  N GKS+L NALA +D A
Sbjct: 180 VDVSPEVTGLIQGVIQGLEAEIAGVSVSERIRTGFEVAIVGAPNVGKSTLLNALAGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRDV+ + +DL G  V + DTAG+RET D VE  GI R       ADL + L
Sbjct: 240 ITSEFAGTTRDVIEVRMDLAGLPVTLLDTAGLRETTDAVESIGIARARARAAQADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
             I    +  F    D I +  K+D+           +S  TG GL EL+++I ++L   
Sbjct: 300 --IEDGGDFEFVPEADDIVVRAKADISGDLM----GAVSGKTGAGLSELVDRIAAVLGA- 352

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            + +   + + +RH   + + ++ L+++  +L   +   +I AE LR+A  +L  + G +
Sbjct: 353 -RAMGAGLATRERHRQAMVRGLKALQVSLDTLPLGEVMAEIAAEELRVAIRALDSLVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE +LD IF+ FC+GK
Sbjct: 412 DVETVLDEIFASFCLGK 428


>gi|251791873|ref|YP_003006593.1| tRNA modification GTPase TrmE [Aggregatibacter aphrophilus NJ8700]
 gi|247533260|gb|ACS96506.1| tRNA modification GTPase TrmE [Aggregatibacter aphrophilus NJ8700]
          Length = 451

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 175/456 (38%), Positives = 258/456 (56%), Gaps = 26/456 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP+   V + +  K  P PR A    F   DG +LD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPNAIDVAQAVLGKC-PKPRMADYLPFKDEDGTLLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILRIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED- 183
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE  
Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEID 180

Query: 184 -VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            + +   +  LNDI+   + + +   QG    I++ G K+VI G  NAGKSSL NALA +
Sbjct: 181 FLADGKIESYLNDIIAQLDGVRAEAKQGS---ILQEGMKVVIAGRPNAGKSSLLNALAGR 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L+G  + I DTAG+RE  D VE+ GI R + E+E AD I
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLREATDEVERIGISRAWSEIEQADRI 297

Query: 303 LL----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSF 346
           LL          L ++ S+     P +I    I  K+DL       Y+        +S+ 
Sbjct: 298 LLMLDGSDTEQDLSKVRSEFLAKLPNHIPVTIIRNKADLTGEQEGLYEEQGYTVVSLSAK 357

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDI 404
           T  G+E L N +K  +  +   +     + +RHL  L Q  ++L++    L E   G ++
Sbjct: 358 TQRGVEILRNHLKQSMGYQ-TGMEGGFLARRRHLEALEQAAQHLQIGHVQLTEFHAG-EL 415

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRL   +L +ITG    + LL  IFS FCIGK
Sbjct: 416 LAEELRLVQSALSEITGQFTSDDLLTNIFSSFCIGK 451


>gi|312115383|ref|YP_004012979.1| tRNA modification GTPase TrmE [Rhodomicrobium vannielii ATCC 17100]
 gi|311220512|gb|ADP71880.1| tRNA modification GTPase TrmE [Rhodomicrobium vannielii ATCC 17100]
          Length = 460

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 168/465 (36%), Positives = 257/465 (55%), Gaps = 37/465 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKGL 65
           TI+A+S+    + I++IR+SG +  +    +C  + P PR +S R       R +LD+ +
Sbjct: 2   TIYALSSAPGRAGIAVIRISGRASRKTLYALCNGRLPAPRVSSFRRLRHPTSREMLDEAM 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++  P P +FTGED AE +VHGG AVV  ++  LA +  LRLA PGEF+RRAF NGK+DL
Sbjct: 62  VLWLPGPANFTGEDMAELYVHGGRAVVTAVMNALADV-GLRLAEPGEFTRRAFGNGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE LADLI+++TE+QRR ++   SG + + Y +W   L    +++EA LDFS+E D+ 
Sbjct: 121 TEAEGLADLINADTEIQRRQALAQHSGAMRARYEKWRRTLLKAMAYVEASLDFSDEADIA 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           + + KE + +   L  ++   ++ G+ GEI+R G  + I+G  N GKSSL NALA ++ A
Sbjct: 181 DGAFKEAVPEARLLAAELERALADGRRGEILREGISVAIVGEPNVGKSSLLNALAGREAA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR------------TF 293
           IV D PGTTRDV+ + LDL+GY   + DTAGIRE    VE+EG++R              
Sbjct: 241 IVYDEPGTTRDVIEVSLDLDGYPFVLRDTAGIREAASPVEQEGVRRALAAAEAADVVLAM 300

Query: 294 LEVENADLILLLKEINS---------KKEISFPKNIDFIFIGTKSDLY-----STYTEEY 339
           ++    D   L  E  +            ++    +  I +  K DL       ++  E 
Sbjct: 301 VDGSCGDAGALPAEGEAGGTPSGEGIAAAVTSSSGVKLIVV-NKVDLAPPPAPGSFGPEA 359

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT----VRYLEMASL 395
            + IS+ T  GL+ L   +    S  +        +  RH   + +     V +L+ A  
Sbjct: 360 IY-ISAKTCLGLDALKAALVRFASESYGSGEAPTITRVRHRQEIGRARAALVAFLDGAEA 418

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            E     ++ AE+LR A+ +LG++TG +DVE +L  IF +FC+GK
Sbjct: 419 GEAP---ELAAEHLREAADALGRLTGRLDVEDVLGQIFGEFCVGK 460


>gi|260753419|ref|YP_003226312.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552782|gb|ACV75728.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 434

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 166/444 (37%), Positives = 260/444 (58%), Gaps = 20/444 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64
           +TIFA+S+G  P+ I++IR+SG +       + +KK P  R+A LR  +  D G  LD+ 
Sbjct: 2   KTIFALSSGRPPAGIAVIRISGSAAADTACLLTRKKIPEARRAVLRNLYDPDSGEQLDQS 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LL+  P+P++ TGED  E HVHGG AV++ +L+ L K+P+LR A  GEF+RRAFENG I 
Sbjct: 62  LLLWLPAPKTVTGEDLLELHVHGGRAVIDAVLKTLEKLPDLRPAEAGEFTRRAFENGVIS 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE L DL+++ET  QRR ++    G L      W D+L  +   IEA  DF+E+ + 
Sbjct: 122 LHEAEGLGDLLTAETASQRRAALMMSGGALGQQISAWQDRLLALSGQIEASFDFAEDIEE 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGK------LGEIIRNGYKIVILGHSNAGKSSLFNA 238
               S++ L     +K+ I++ I++ +        E +R+G ++V+ G  NAGKS+L NA
Sbjct: 182 DETESRQHLA---VMKDKIAALIAEHRQFENRPTMERLRDGLRVVLAGRPNAGKSTLINA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D+AI   I GTTRDV+ +   L+G  ++ SDTAG+ E+DD++EK GI+R    +E 
Sbjct: 239 LTGQDIAITAPIAGTTRDVIEVSFALKGIPMRFSDTAGLHESDDLIEKAGIERAQRAIEE 298

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLEELIN 356
           AD++L L     + E +   + + + +  + DL   +   E+ D  +S+ TGEG++ L  
Sbjct: 299 ADILLWL----GQAEEAPKTDGEVLVLYPQIDLPERHPIPEKIDIAVSAVTGEGIDRLQE 354

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           K+  I   K       +  ++R    + +    L +A L+ +D  + IIAE +R +    
Sbjct: 355 KLVEI-GKKILPKEDEVTLNRRQRQLVKEAADSLALA-LDAED--MLIIAEAIRQSCRCY 410

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            ++TG   VE +LD +FS+FCIGK
Sbjct: 411 DRLTGKAGVENMLDNLFSRFCIGK 434


>gi|269958310|ref|YP_003328097.1| tRNA modification GTPase TrmE [Anaplasma centrale str. Israel]
 gi|269848139|gb|ACZ48783.1| tRNA modification GTPase TrmE [Anaplasma centrale str. Israel]
          Length = 443

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 168/446 (37%), Positives = 255/446 (57%), Gaps = 18/446 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+ST    S +++IR+SG +  +  + +  K+   PR A+ +  +    + +D+ +
Sbjct: 5   DTIFALSTPMGKSGVAVIRISGHNALKSMQLLGVKEPVRPRVATCKTLYDKKRQPIDQAV 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED  E  VHG +AV+  + EEL  +   R+A PGEFS RAF NGKIDL
Sbjct: 65  VLYFPGPGSFTGEDVVELQVHGSLAVIRLLFEELQTV--FRIAEPGEFSLRAFLNGKIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE +ADL++SETE Q R +    SG L  LY +W   L  I S +EA +DF ++   Q
Sbjct: 123 TRAEGIADLVNSETEAQLRQAFAQSSGFLERLYEEWRSSLVDILSDLEAYIDFPDDVSPQ 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  V + +  L N +  H+  G  GE +R+G ++ ILG  N GKS+LFN LA++D+A
Sbjct: 183 ILRS--VHDRVKELHNSLERHLDDGHRGERLRHGMRVAILGKPNVGKSTLFNHLARRDMA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++ PGTTRDVL   +D+ GY   I DTAGIRE+ D VE+EGI R   E   AD+ ++L
Sbjct: 241 IVSEYPGTTRDVLEAHVDIGGYPFIIVDTAGIRESTDFVEREGIMRAKSEAATADIRIML 300

Query: 306 ------KEINSKKEISFPKNIDFIFIGTKSD-----LYSTYTEEYDHLISSFTGEGLEEL 354
                   + + + I    +   I++ +K+D            +  +L+S  T  G++ L
Sbjct: 301 FPHSEADNLGAHEAIEGGDDGKTIYVLSKADNAKEGETRIIEGKQFYLVSVHTNLGVDSL 360

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
           ++ +K    + F K    + + +RH  HL    + +   +    +   +I+AE LRLA+ 
Sbjct: 361 LSALKERAIDGFPKSGDVLITSQRHRGHLQSAAKVISDIT---DEMPAEIVAEYLRLATK 417

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            +GK+TG V  + +LD IF +FCIGK
Sbjct: 418 EIGKVTGAVYGDDILDNIFKRFCIGK 443


>gi|241762347|ref|ZP_04760427.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373141|gb|EER62780.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 434

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 166/444 (37%), Positives = 259/444 (58%), Gaps = 20/444 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64
           +TIFA+S+G  P+ I++IR+SG +       + +KK P  R+A LR  +  D G  LD+ 
Sbjct: 2   KTIFALSSGRPPAGIAVIRISGSAAADTACLLTRKKIPEARRAVLRNLYDPDSGEQLDQS 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LL+  P+P++ TGED  E HVHGG AV++ +L+ L K+P+LR A  GEF+RRAFENG I 
Sbjct: 62  LLLWLPAPKTVTGEDLLELHVHGGRAVIDAVLKTLEKLPDLRPAEAGEFTRRAFENGVIS 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE L DL+++ET  QRR ++    G L      W D+L  +   IEA  DF+E+ + 
Sbjct: 122 LHEAEGLGDLLTAETASQRRAALMMSGGALGRQISAWQDRLLALSGQIEASFDFAEDIEE 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGK------LGEIIRNGYKIVILGHSNAGKSSLFNA 238
               S++ L     +K+ I++ I++ +        E +R+G ++V+ G  NAGKS+L NA
Sbjct: 182 DETESRQHLA---VMKDKIAALIAEHRQFENRPTMERLRDGLRVVLAGRPNAGKSTLINA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D+AI   I GTTRDV+ +   L+G  ++ SDTAG+ E+DD++EK GI+R    +E 
Sbjct: 239 LTGQDIAITAPIAGTTRDVIEVSFALKGIPMRFSDTAGLHESDDLIEKAGIERAQRAIEE 298

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLEELIN 356
           AD++L L     + E +   + + + +  + DL   +   E+ D  +S+ TGEG++ L  
Sbjct: 299 ADILLWL----GQAEEAPKTDGEVLVLYPQIDLPKRHPIPEKIDIAVSAVTGEGIDRLQE 354

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           K+  I   K       +  ++R    + +    L +A L  +D  + I+AE +R A    
Sbjct: 355 KLVEI-GKKILPKEDEVTLNRRQRQLVKEAADSLALA-LEAED--MLIMAEAIRQACRCY 410

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            ++TG   VE +LD +FS+FCIGK
Sbjct: 411 DRLTGKAGVENMLDNLFSRFCIGK 434


>gi|222475664|ref|YP_002564081.1| thiophene and furan oxidation protein (thdF) [Anaplasma marginale
           str. Florida]
 gi|255003656|ref|ZP_05278620.1| tRNA modification GTPase TrmE [Anaplasma marginale str. Puerto
           Rico]
 gi|222419802|gb|ACM49825.1| thiophene and furan oxidation protein (thdF) [Anaplasma marginale
           str. Florida]
          Length = 443

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 169/448 (37%), Positives = 256/448 (57%), Gaps = 22/448 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+ST    S +++IR+SG +  +  + +  K+   PR A+ +  +    + +D+ +
Sbjct: 5   DTIFALSTPMGKSGVAVIRISGHNALKSMQLLGVKEPVRPRVATCKTLYDKKRQPIDQAV 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED  E  VHG +AV+  + EEL  +   R+A PGEFS RAF NGKIDL
Sbjct: 65  VLYFPGPGSFTGEDVVELQVHGSLAVIRLLFEELQTV--FRIAEPGEFSLRAFLNGKIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE +ADL++SETE Q R +    SG L  LY +W   L  I S +EA +DF ++   Q
Sbjct: 123 TRAEGIADLVNSETEAQLRQAFAQSSGFLERLYEEWRSSLVDILSDLEAYIDFPDDVSPQ 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  V + +  L N +  H+  G  GE +R+G ++ ILG  N GKS+LFN LA++D+A
Sbjct: 183 ILRS--VHDRVKELHNSLERHLDDGHRGERLRHGMRVAILGKPNVGKSTLFNHLARRDMA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++ PGTTRDVL   +D+ GY   + DTAGIRE+ D VE+EGI R   E   AD+ ++L
Sbjct: 241 IVSEYPGTTRDVLEAHVDIGGYPFIVVDTAGIRESTDFVEREGIMRAKSEAATADIRIML 300

Query: 306 KEINSKKEISFPKNID------FIFIGTKSDLYSTYTEEYD-------HLISSFTGEGLE 352
              +    +   + I+       I++ +K+D  S    E         +L+S  T  G++
Sbjct: 301 FPHSEAGNLGVHEAIEGGDDGKTIYVLSKAD--SAKEGETRIIEGKQFYLVSVHTNLGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            L++ +K    + F K    + + +RH  HL    + +   +    +   +I+AE LRLA
Sbjct: 359 SLLSALKERAIDGFPKSGDVLITSQRHRGHLQSAAKVISDIT---DEMPAEIVAEYLRLA 415

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +GK+TG V  + +LD IF +FCIGK
Sbjct: 416 TKEIGKVTGAVYGDDILDNIFKRFCIGK 443


>gi|189184774|ref|YP_001938559.1| tRNA modification GTPase TrmE [Orientia tsutsugamushi str. Ikeda]
 gi|189181545|dbj|BAG41325.1| tRNA modification GTP-binding protein ThdF (TrmE) [Orientia
           tsutsugamushi str. Ikeda]
          Length = 447

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 171/453 (37%), Positives = 259/453 (57%), Gaps = 27/453 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-LDGRILDKG 64
           +TIFA S+    + +++ R+SG     + E +C K    PRK   R     +  +++DK 
Sbjct: 4   KTIFAQSSAKGKAGVAVFRISGGLSLLIVERLCGKFNIVPRKVYYRTIRCYITSQVIDKA 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F    SFTGED  E H HG +AV   +   + +   +RLA PGEF++RAF NGK+D
Sbjct: 64  LIVYFQGEYSFTGEDVVEIHTHGSVAVAKMLTRSILECDGVRLAEPGEFAKRAFLNGKMD 123

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE L DLI SET MQ + ++  M GEL  LY  W   L  I SF+E  +DF +EE  
Sbjct: 124 LTMAEGLVDLIESETLMQHKQAIRQMGGELEKLYSHWRGMLIKILSFVEGYIDFPDEEIP 183

Query: 185 QNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           Q+    +K ++N+   L  +IS+H+   + GE++R+G  + I G +N GKSSL N L  +
Sbjct: 184 QSVLREAKSIINN---LTQEISNHLGDARKGEVLRHGIVLAITGETNTGKSSLLNYLTMR 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DIPGTTRDV+   LD+ GY + + DTAGIRE+DD +E+EGIKR+ L  +N+D+ 
Sbjct: 241 EAAIVSDIPGTTRDVIEAHLDIGGYPIIVRDTAGIRESDDPIEQEGIKRSLLAFKNSDIR 300

Query: 303 LLLKEINSKKEIS-----FPKNIDFIFIGTKSDLYSTYTEEYDHL--------ISSFTGE 349
           +L+ +  +   ++        ++  I +  K DL + Y  +   L        IS     
Sbjct: 301 ILMIDATNMNSVNQTIAHLLNDVYTILVINKIDLVN-YRYDGSRLPCDKPIVAISLLKQV 359

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYH--LSQTVRYLEMASLNEKDCGLDIIAE 407
           GL+ L+ +I S  + K    P ++P+  R  Y   L+Q +  L++ +L E D  L + AE
Sbjct: 360 GLDRLMAEIVS-YAEKIAD-PGNVPAITRERYRNSLNQALELLQLVNL-END--LVLAAE 414

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LR+A   L  ITG + ++ +L  IF+ FCIGK
Sbjct: 415 DLRMAIRYLEHITGKIKIDDILAEIFASFCIGK 447


>gi|254476302|ref|ZP_05089688.1| tRNA modification GTPase TrmE [Ruegeria sp. R11]
 gi|214030545|gb|EEB71380.1| tRNA modification GTPase TrmE [Ruegeria sp. R11]
          Length = 428

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 171/437 (39%), Positives = 247/437 (56%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    + +S+IRLSGP        I     P   +A LR      G  +D+ L
Sbjct: 2   DTIFALASAQGKAGVSVIRLSGPQALPTASKISGGDLPTAGRA-LRVLSDQSGERIDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED+ EF VHG  +VV+ +L  LA+   +RLA+PGEF+RRA ENGK+DL
Sbjct: 61  VLTFAGPNSFTGEDTVEFQVHGSTSVVSAMLALLAEFDGVRLADPGEFTRRALENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E+LADLI +ETE QR  +   ++G L +L  +W   L    S IE  +DF++EE V 
Sbjct: 121 SQVEALADLIDAETEAQRIQAQTVLAGGLGALAERWRVDLIRAASLIEVTIDFADEE-VP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV   +  + +D+   I+  ++ E IR+G+++ I+G  N GKS+L NALA ++ A
Sbjct: 180 VDVTDEVTALLAGVVSDLQPQITGVQIAERIRSGFEVAIVGAPNVGKSTLLNALAGREAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRDV+ + +DL G  V + DTAG+RETDD VE  GI+      E ADL + L
Sbjct: 240 ITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETDDHVEGIGIELAKKRAETADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                + +I  P     I +  K+DL S    +    IS  TG+G+++L+ +I  IL ++
Sbjct: 300 A--GDRNDIDLPIRDQDIVLKPKADLLS----DVPGAISGKTGQGVDDLVREIGRILKDR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCV 423
             K    I +  RH   +      L  A   L       DI AE++R A  SL  + G V
Sbjct: 354 AGK--AGIATRARHRDAMKAASDRLMSAQEILKRGPEFYDIAAEDMRSAIRSLEMLVGRV 411

Query: 424 DVEQLLDIIFSKFCIGK 440
            VE LLD IFS FC+GK
Sbjct: 412 GVENLLDEIFSSFCLGK 428


>gi|261868617|ref|YP_003256539.1| tRNA modification GTPase TrmE [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413949|gb|ACX83320.1| tRNA modification GTPase TrmE [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 451

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 171/457 (37%), Positives = 257/457 (56%), Gaps = 28/457 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + +  K  P PR A    F   DG +LD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPKAIEVAQAVLGKC-PKPRMADYLSFKEADGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F  P SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIEGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-I 179

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LNDI+   + + +   QG    I+R G K+VI G  NAGKSSL N LA 
Sbjct: 180 DFLADGKIEGHLNDIIAQLDKVRAEAKQGS---ILREGMKVVIAGRPNAGKSSLLNTLAG 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRDVL   + L+G  + I DTAG+R+  D VE+ GI R + E+E AD 
Sbjct: 237 REAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDATDEVERIGISRAWHEIEQADR 296

Query: 302 ILL----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISS 345
           ILL          L ++ S+     P NI    I  K+DL       Y+        +S+
Sbjct: 297 ILLMLDSSDTEQDLAKVRSEFLAKLPNNIPLTIIRNKADLSGEAERLYEEDGYTVVNLSA 356

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403
            T +G++ L + +K  +  +   +     + +RHL  L    R+L+M    L +   G +
Sbjct: 357 KTQQGVDLLRDHLKQAMGYQ-TGMEGGFLARRRHLEALELAARHLQMGHVQLTQFHAG-E 414

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 415 LLAEELRMVQSALSEITGQFTSDDLLTNIFSSFCIGK 451


>gi|195111166|ref|XP_002000150.1| GI22686 [Drosophila mojavensis]
 gi|193916744|gb|EDW15611.1| GI22686 [Drosophila mojavensis]
          Length = 494

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 165/472 (34%), Positives = 263/472 (55%), Gaps = 40/472 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGR-ILDK 63
           TI+++S+G +   +S+IR+SGP   Q    +    +  P  R A L+ F+    + I+D+
Sbjct: 25  TIYSLSSGHVKCGVSVIRVSGPQTKQALRAVVNNSEYEPKQRLAYLKSFYHPTSKEIIDR 84

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGED+ EF VHG +AV++ +L+ L ++P LR A PGEF++RAF  GK+
Sbjct: 85  GLLLWFPGPASFTGEDACEFQVHGSLAVISAMLDALGQLPGLRPAQPGEFTKRAFFGGKL 144

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E L+DLI +ETE QR+ ++   +G L  LY  W  +L    + +EA +DF+E+E 
Sbjct: 145 DLTEVEGLSDLIHAETEAQRKQALLQSTGTLGRLYDNWRKRLIRCAAHLEAYIDFAEDEQ 204

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  ++ +I +H++  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 205 IEGGVVLKLTKELKAVQREIRAHLNDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRA 264

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVTD  GTTRD++       GY V  +DTAG+R+ T D +E EG+ R    +  +DLI
Sbjct: 265 VSIVTDQAGTTRDIIETTHSFGGYPVVFADTAGLRKHTTDAIEMEGMARARQCLAQSDLI 324

Query: 303 LL------LKEINSK-----------KEISFPKNI----DFIFIGTKSDLYSTYTEEYDH 341
           LL      L++++S            +E+  PK +        +  K+D  S   EE DH
Sbjct: 325 LLLTDAKALRDVDSNESLNGRIDSYLQELDIPKELCRGKRLQLVANKTDTLS--AEEIDH 382

Query: 342 L--------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLE 391
           L        IS    + L E +  ++ +L           P  +H R+   L + + ++E
Sbjct: 383 LRKLKDVLCISCHKQDNLPEFLGSLEQLLQQLCGTPQAEHPRITHSRYRQQLERCIEHIE 442

Query: 392 MASLNEKD---CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   + K      + I A+ LR +   + +ITG V  E +LD+IF  FCIGK
Sbjct: 443 IFLRDYKPDVFPDMAIAAQQLRKSVRCIERITGHVSCEDILDVIFKDFCIGK 494


>gi|301753861|ref|XP_002912764.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
           isoform 2 [Ailuropoda melanoleuca]
          Length = 470

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 176/444 (39%), Positives = 252/444 (56%), Gaps = 18/444 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYF-FGLDGRILDKG 64
           T+FA+S+G     I++IR SGP+       +   +  P  R A LR       G  LD+ 
Sbjct: 35  TVFALSSGQGRCGIAVIRTSGPASGHALRSLTAPQDLPPARSACLRLLSHPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W   LT   + +EA +DFSE++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRAWAKTLTKALAHVEAYIDFSEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    + V + +  L+  +S+H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLERVDSQVRELELALSAHLRDARRGQRLRSGAHVVVAGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+   +SDTAG+RE    VE+EG++R        D I+ 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGVGPVEQEGVRRARESCNFLDTIVT 334

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKI 358
                + KE S       + +  KSDL      +         L+S  TGEGL+ L+  +
Sbjct: 335 PAGAGNPKENS----QRLLLVLNKSDLLPRGGPDPSPNLPPHLLLSCLTGEGLDGLLEAL 390

Query: 359 KSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           +  L+      P + P  +  RH +HL   +  L       KD  L + AE LRLA   L
Sbjct: 391 RKELAEVCGD-PSTGPLLTRARHQHHLQGCLDALGHYK-QTKD--LALAAEALRLARGHL 446

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G+ITG    +++LDIIF  FC+GK
Sbjct: 447 GRITGGGGTDEILDIIFRDFCVGK 470


>gi|73986024|ref|XP_865647.1| PREDICTED: similar to GTP binding protein 3 (mitochondrial) isoform
           V isoform 2 [Canis familiaris]
          Length = 471

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 175/444 (39%), Positives = 248/444 (55%), Gaps = 17/444 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR-ILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R A LR       R  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRSLTASRDLPPARSACLRLLSHPHSREPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCAEFHVHGGSAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W   LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCHGWAKTLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    +   + +  L+  +S+H+   + G+ +R+G  IV+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLERANSQVRELELALSAHLRDARRGQRLRSGAHIVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+   +SDTAG+RE    VE+EG++R        D +++
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGAGPVEQEGVRRARQSRSFLDTVVV 334

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKI 358
                S  E S       + +  KSDL      +         L+S  TGEGL+ L+  +
Sbjct: 335 PAGAGSPSENS----QRLLLVLNKSDLLPRGGPDLSPHLPPHLLLSCLTGEGLDGLLEAL 390

Query: 359 KSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           +  L+          P  +  RH +HL   +  L       KD  L + AE LRLA   L
Sbjct: 391 RKELAEVCGDPSTGPPLLTRARHQHHLQGCLDALSHYK-QTKD--LALAAEALRLARGHL 447

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            +ITG  D E++LDIIF  FC+GK
Sbjct: 448 ARITGGGDTEEILDIIFRDFCVGK 471


>gi|307172923|gb|EFN64090.1| tRNA modification GTPase GTPBP3, mitochondrial [Camponotus
           floridanus]
          Length = 510

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 174/468 (37%), Positives = 256/468 (54%), Gaps = 37/468 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKGL 65
           TI A+S+G     ++++RLSG    +  + +    K  PR A LR     +   ++D GL
Sbjct: 46  TICALSSGRGKCGVAVVRLSGSRSLEALKRMTNISKLVPRTAFLRKIRDPETEEVIDNGL 105

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGEDS EFHVHGG A++  +++ L+K+  +  A PGEF+RRAF N K+DL
Sbjct: 106 CLWFPGPHSFTGEDSVEFHVHGGTAILTRLMQALSKL-QVHPALPGEFTRRAFYNNKLDL 164

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E LADLI +ETE QR+ ++    G L  LY  W   L+   + IEA +DF EE++++
Sbjct: 165 TEVEGLADLIEAETECQRKQALLQADGVLHKLYDGWRKVLSESVASIEAYIDFGEEDNIE 224

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +   +   + +  L  D+  H++ G+ GEI+RNG + VI+G  N GKSSL N L +++ A
Sbjct: 225 SDVVQRAHDALRQLVRDLEEHLADGRRGEILRNGIRTVIVGEPNVGKSSLLNHLVQRNAA 284

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVENADLILL 304
           IVT + GTTRDV+ +  ++ GY V I+DTAGI   T DIVE EGI+R     ENAD +++
Sbjct: 285 IVTPVAGTTRDVIELSANISGYPVLIADTAGITNNTKDIVEVEGIRRARSYAENADFVIV 344

Query: 305 LKEINSK--KEISFPKNID-------------------FIFIGTKSDLYSTYTEEY---- 339
           + +       E+++   +                    FI I  K DL     +      
Sbjct: 345 VMDAFKCVISEMTYEDYLRGYLSSLGIYELLTKMGKERFIVIMNKRDLLKAEDKRRLDDV 404

Query: 340 -DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVR----YLEM 392
              LIS  T +G E+L+  +    SN   +     P  S +RH  HL++ +R    Y ++
Sbjct: 405 EAVLISCKTEDGFEDLLQSLTDRFSNICGEPSAENPTISQERHRNHLTRCLRHLRNYFQL 464

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               + D  + I AE +  A   LG+ITG V   ++LDIIF  FCIGK
Sbjct: 465 CGNEQHD--MAIAAEEIHKAMRELGRITGHVSTNEILDIIFKTFCIGK 510


>gi|296533444|ref|ZP_06896027.1| tRNA modification GTPase TrmE [Roseomonas cervicalis ATCC 49957]
 gi|296266224|gb|EFH12266.1| tRNA modification GTPase TrmE [Roseomonas cervicalis ATCC 49957]
          Length = 439

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 173/441 (39%), Positives = 257/441 (58%), Gaps = 12/441 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64
           +TIFA+++GA  +AIS++RLSGP    V   +  +  P PR+ASLR     + G +LD+ 
Sbjct: 5   DTIFALASGAGRAAISLLRLSGPDSALVLTRLAGRL-PRPRQASLRRLRHPETGELLDEA 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LL+ FP+P S+TGEDSAE H+HGG AV+ G+   L      R A PGEF+RRAF NG++D
Sbjct: 64  LLLWFPAPRSYTGEDSAELHLHGGRAVLEGVSAALLAC-GARPAEPGEFTRRAFLNGRLD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE +ADLI +ET  QRR ++    G L++ Y  W ++LT + +  EA ++F+E+  +
Sbjct: 123 LTAAEGIADLIDAETAAQRRQALRQAGGALAARYAGWGERLTRLLAHQEASIEFAED-GI 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            N    EV      L  +I++H++ G  GE +R G    I+G  NAGKSSL NALA ++ 
Sbjct: 182 PNDLDDEVRQGAATLAAEIAAHLADGGRGERLREGLWAAIIGAPNAGKSSLLNALAGREA 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+   GTTRDV+ + LDL G  V ++DTAG+R+T D +E EG++R     E ADL++ 
Sbjct: 242 AIVSARAGTTRDVVEVRLDLGGVPVLLADTAGLRDTPDEIEAEGVRRARRRAEEADLVIA 301

Query: 305 L--KEINSKKEISFPKNIDFIFIGTKSDLYSTYTE---EYDHLISSFTGEGLEELINKIK 359
           L   +     E         + +  K DL +            +S+  G GL+ L + ++
Sbjct: 302 LFAADAAPDAETLALLRPGTVVVANKVDLAAPPASIGGIAPIALSARDGTGLDALRSLLE 361

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
               ++      +  +  RH   L + V +LE A   ++    ++ AE+LR A  SLG++
Sbjct: 362 REAQSRAGLSEEASLTRPRHRAALGEAVDWLEEA---QRAPLPELAAESLRAALRSLGRL 418

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG V VEQ+LD++F  FCIGK
Sbjct: 419 TGRVGVEQVLDVVFGDFCIGK 439


>gi|293391846|ref|ZP_06636180.1| tRNA modification GTPase TrmE [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952380|gb|EFE02499.1| tRNA modification GTPase TrmE [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 451

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 171/457 (37%), Positives = 257/457 (56%), Gaps = 28/457 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + +  K  P PR A    F   DG +LD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPKAIEVAQAVLGKC-PKPRMADYLPFKEADGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F  P SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIEGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-I 179

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LNDI+   + + +   QG    I+R G K+VI G  NAGKSSL N LA 
Sbjct: 180 DFLADGKIEGHLNDIIAQLDKVRAEAKQGS---ILREGMKVVIAGRPNAGKSSLLNTLAG 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRDVL   + L+G  + I DTAG+R+  D VE+ GI R + E+E AD 
Sbjct: 237 REAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDATDEVERIGISRAWHEIEQADR 296

Query: 302 ILL----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISS 345
           ILL          L ++ S+     P NI    I  K+DL       Y+        +S+
Sbjct: 297 ILLMLDSSDTEQDLTKVRSEFLAKLPNNIPLTIIRNKADLSGEAERLYEEDGYTVVNLSA 356

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403
            T +G++ L + +K  +  +   +     + +RHL  L    R+L+M    L +   G +
Sbjct: 357 KTQQGVDLLRDHLKQAMGYQ-TGMEGGFLARRRHLEALELAARHLQMGHVQLTQFHAG-E 414

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 415 LLAEELRMVQSALSEITGQFTSDDLLTNIFSSFCIGK 451


>gi|86747518|ref|YP_484014.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris HaA2]
 gi|123099260|sp|Q2J357|MNME_RHOP2 RecName: Full=tRNA modification GTPase mnmE
 gi|86570546|gb|ABD05103.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris HaA2]
          Length = 460

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 175/466 (37%), Positives = 262/466 (56%), Gaps = 32/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA+++G LPSA++I+R+SG     V   +     P PR         ++  +
Sbjct: 1   MHPNDQTIFALASGRLPSALAIVRVSGARARDVLAALTGALPP-PRTVRRVRIRDVNHEL 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ F +P S TGED AEFH+HGG AV+  +++ LA   ++R A PGEF+RRAFEN
Sbjct: 60  IDDAVVLWFAAPASATGEDVAEFHIHGGRAVLAALVKALASFDDVRPAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++TE QRRL++  + G L     +W  ++    + IEA +DF++
Sbjct: 120 GKLDLTEAEGLDDLIHADTEAQRRLAVRQLGGLLGDRARRWRAQIIEALALIEAGIDFAD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHI-SQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E DVQ       L  I  L  +I+  + +QGK  E +R+G  + I G  N GKS+L N L
Sbjct: 180 EGDVQGELMAPALRTIATLHGEIAEVLAAQGK-SERLRDGLVVAIAGPPNVGKSTLINRL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A+++VAIV+   GTTRDV+ + LDL GY V + DTAGIRE++D VE+EG++R       A
Sbjct: 239 ARREVAIVSPHAGTTRDVIEVQLDLGGYPVTLIDTAGIRESEDSVEQEGVRRAKARAAEA 298

Query: 300 DLILLL---KEINSKKEISFP-----KNIDFI-----------FIGTKSDLYST---YTE 337
           DL+L L   + I+   E S P       ID +             G  ++L+ T      
Sbjct: 299 DLVLWLGADEAIDVAVEGSAPVWRVRNKIDLVPQADTVGADSGGAGLAANLWQTEGNVAA 358

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLN 396
                IS+  G+G+ +++  +    +  F      ++ S +RH   L Q    L  +   
Sbjct: 359 REAFGISAKRGDGVGDMVEALAGFAAQYFAASGEAAVISRERHRLLLQQAEVMLRCS--- 415

Query: 397 EKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               GL  +++AE LRLA+ +LG++ G VDVE +L  IF +FCIGK
Sbjct: 416 -MTVGLAPELVAEELRLAAGALGRLLGRVDVEDVLGEIFGRFCIGK 460


>gi|188535566|ref|YP_001909363.1| tRNA modification GTPase TrmE [Erwinia tasmaniensis Et1/99]
 gi|254811484|sp|B2VCE7|MNME_ERWT9 RecName: Full=tRNA modification GTPase mnmE
 gi|188030608|emb|CAO98503.1| tRNA modification GTPase TrmE [Erwinia tasmaniensis Et1/99]
          Length = 454

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 172/459 (37%), Positives = 260/459 (56%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH  +TI A +T      + I+R+SG    +V + +  K  P PR A    F   DG  
Sbjct: 1   MNH-SDTIVAQATPPGRGGVGILRVSGSKAAEVAQLLLGKL-PKPRYADYLPFRDADGST 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  EF  HGG  +++ +L+ +  +P LR+ANPGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLEFQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  + ++++   S+ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLHQVIHNLAEVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 297

Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLY--STYTEEYDH----LI 343
            +L +      E  +  EI        P+++    +  K+D+   +   EE +      +
Sbjct: 298 HVLFMVDGTTTEATNPAEIWPDFIARLPESLPVTVVRNKADITGETRGVEEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401
           S+ TGEG+E L + +KS +      +     + +RHL  L     +LE     L     G
Sbjct: 358 SARTGEGIENLRDHLKSSMGFS-GNMEGGFLARRRHLQALELAATHLEQGKHQLLAAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQALSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|146309632|ref|YP_001190097.1| tRNA modification GTPase TrmE [Pseudomonas mendocina ymp]
 gi|166234810|sp|A4Y199|MNME_PSEMY RecName: Full=tRNA modification GTPase mnmE
 gi|145577833|gb|ABP87365.1| tRNA modification GTPase trmE [Pseudomonas mendocina ymp]
          Length = 455

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 170/460 (36%), Positives = 257/460 (55%), Gaps = 25/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH ++TI AV+T      + I+R+SGP   Q+ + IC+++   PR A    F+G     
Sbjct: 1   MNHARDTIAAVATAQGRGGVGIVRVSGPLSGQLAQAICRRELK-PRFAHHGPFYGEQELP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL I FP P SFTGED  E   HGG  V++ +L    ++   RLA PGEFS RAF N
Sbjct: 60  LDEGLAIYFPGPNSFTGEDVLELQGHGGPVVLDLLLRRCLEL-GARLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + GE S       + L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSKRVHALTESLIQLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL+ +  ++ D+S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLSQLDGVRADLSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+TDD VE+ G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDQVERIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHL--- 342
            +LL+ +  + +               P       I  K+DL     +  T    H+   
Sbjct: 298 RVLLVVDSTAPEAADPFALWPEFLEQRPDPARVTLIRNKADLSGEAVTLQTSADGHVTLS 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400
           +S+ + +GLE L   +K+ +  + +       + +RHL  L Q  +YLE     L     
Sbjct: 358 LSAKSADGLELLREHLKACMGYQ-QTAESGFSARRRHLEALHQAEQYLEHGRNQLTLMGA 416

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G +++AE+LR+A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 G-ELLAEDLRMAQQALGEITGAFSSDDLLGRIFSSFCIGK 455


>gi|126724526|ref|ZP_01740369.1| tRNA modification GTPase [Rhodobacterales bacterium HTCC2150]
 gi|126705690|gb|EBA04780.1| tRNA modification GTPase [Rhodobacterales bacterium HTCC2150]
          Length = 430

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 170/441 (38%), Positives = 247/441 (56%), Gaps = 19/441 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGP---SCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           +TIFA+++    S ++++R+SG     C +     C    P PR+  LR  +   G +LD
Sbjct: 3   DTIFALASAKGKSGVAVVRISGSLARDCVEKLASTC----PEPRQMGLRKLYDSVGDVLD 58

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           K L++ F    SFTGED AE H+HG  A V  +L+ L+ M  LR+A PGEF+RRA ENG+
Sbjct: 59  KALVLFFAQNASFTGEDVAELHLHGSPATVKAVLKTLSDMSGLRIAEPGEFTRRALENGQ 118

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL + E L+DL+ +ETE QRR ++    G L      W   L H  + +EA +DF+ +E
Sbjct: 119 LDLAQVEGLSDLVEAETEAQRRQALRIFDGALGVASTAWRGDLVHAAALLEATIDFA-DE 177

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV    + EVL+ I  ++ D++  I      E IR+G+++ I+G  N+GKS+L NALA +
Sbjct: 178 DVPVDVTPEVLDLIGRVQKDLAREIKGSTAAERIRDGFEVAIVGAPNSGKSTLLNALAGR 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AI ++I GTTRDV+ + +DL G  V I DTAG+R+TDD VE  GI+        ADL 
Sbjct: 238 EAAITSEIAGTTRDVIEVRMDLRGLPVTILDTAGLRKTDDHVEGLGIQLAEKRAAQADLR 297

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           + L +  S   +        I    K DL    ++E    IS  TG G++ LI +I   L
Sbjct: 298 VFLDDDPSALSVEIQSG--DILRRPKGDLSGGDSKES---ISGKTGYGVDLLIEEIADSL 352

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD---IIAENLRLASVSLGKI 419
            N+      +I   +RH   L    + +E+A   E   G D     AE LR+A  +L  +
Sbjct: 353 ENRASGAGVAI--KERHRVALISATQAIEIAR-EEVILGPDRAEFAAEELRVAIRALASL 409

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
            G VDVEQ+LD IF+ FC+GK
Sbjct: 410 IGDVDVEQILDDIFANFCLGK 430


>gi|37528711|ref|NP_932056.1| tRNA modification GTPase TrmE [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|46577344|sp|Q7MAX1|MNME_PHOLL RecName: Full=tRNA modification GTPase mnmE
 gi|36788150|emb|CAE17277.1| tRNA modification GTPase TrmE [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 454

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 168/454 (37%), Positives = 255/454 (56%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SGP   QV E +  K  P PR A    F  +DG+ILD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGPKAAQVAEVVLGKL-PKPRYADYLPFRDVDGQILDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I FP P SFTGED  E   HGG  +++ +L+ +  +  +R+ANPGEFS RAF N K+DL
Sbjct: 64  AIYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLSGVRIANPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M  + G  S+   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSTQVHQMVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  ++    SQ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEAKLDEVIVELERVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFM 302

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYT-----EEYDHL-ISSFTG 348
            +  +   +             PK++    +  K+D+    T       Y  + +S+ +G
Sbjct: 303 VDSTTTNAVEPVEIWPEFMARLPKSLPITVVRNKTDMTDEETSIAEVSGYSLIRLSARSG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L + +K  +            + +RHL  L+    +L+     L     G +++A
Sbjct: 363 EGIDLLRDHLKETMGFS-SNTEGGFLARRRHLQALNTAAEHLQQGHEQLVVARSG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|330505868|ref|YP_004382737.1| tRNA modification GTPase TrmE [Pseudomonas mendocina NK-01]
 gi|328920154|gb|AEB60985.1| tRNA modification GTPase TrmE [Pseudomonas mendocina NK-01]
          Length = 455

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 169/460 (36%), Positives = 255/460 (55%), Gaps = 25/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH ++TI AV+T      + I+R+SGP    + + IC+++   PR A    FF    + 
Sbjct: 1   MNHARDTIAAVATAQGRGGVGIVRVSGPLAGDLAQAICRRELK-PRFAHHGPFFAEQDQT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL I FP P SFTGED  E   HGG  V++ +L    ++   RLA PGEFS RAF N
Sbjct: 60  LDEGLAIYFPGPNSFTGEDVLELQGHGGPVVLDLLLRRCLEL-GARLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + GE S       + L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSKRVHALTESLIQLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL+ +  ++ D+S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLSQLDSVRADLSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+TDD VE+ G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDHVERIGVERALKAISEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHL--- 342
            +LL+ +  + +               P       I  K+DL        T    H+   
Sbjct: 298 RVLLVVDSTAPEAADPFALWPEFLEQRPDPARVTLIRNKADLSGEAVGLQTSADGHVTLS 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400
           +S+ + EGLE L   +K+ +  + +       + +RHL  L Q  +YL+     L     
Sbjct: 358 LSAKSAEGLELLREHLKACMGYQ-QTAESGFSARRRHLEALHQAEQYLQHGRNQLTLMGA 416

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G +++AE+LR+A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 G-ELLAEDLRMAQQALGEITGAFSSDDLLGRIFSSFCIGK 455


>gi|27375745|ref|NP_767274.1| tRNA modification GTPase TrmE [Bradyrhizobium japonicum USDA 110]
 gi|81842005|sp|Q89WP4|MNME_BRAJA RecName: Full=tRNA modification GTPase mnmE
 gi|27348883|dbj|BAC45899.1| tRNA modification GTPase [Bradyrhizobium japonicum USDA 110]
          Length = 452

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 178/454 (39%), Positives = 259/454 (57%), Gaps = 16/454 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA+S+G  PSAI+++R+SG     V   +  K  P PR+AS R      G+ 
Sbjct: 1   MHPRDQTIFALSSGRPPSAIAVVRVSGAQAGLVLTTLAGKL-PAPRQASRRLLRDGTGQP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ FP P S TGED AEFH HGG AV+  +L  ++ +PN+R A PGEF+RRAFEN
Sbjct: 60  IDDAVVLWFPGPASATGEDVAEFHAHGGRAVLAALLAAISVIPNMRAAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++T+ QRR ++  + G L +    W +++    + IEA +DFS+
Sbjct: 120 GKLDLTEAEGLDDLIHADTDRQRRQALRQLQGLLGNRARDWRERIIEASALIEAGIDFSD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV        +  I  L  +I+  ++     E +R+G  + I G  N GKS+L N LA
Sbjct: 180 EGDVPAELRAPAVKAIKALHVEITEVLAAQGHSERLRDGMVVAIAGEPNVGKSTLMNQLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++DVAIV+   GTTRDV+ + LDL+GY V + DTAGIRETDD VE+EG++R     E+AD
Sbjct: 240 RRDVAIVSPHAGTTRDVIEVQLDLDGYPVTVIDTAGIRETDDPVEQEGVRRARARAEDAD 299

Query: 301 LILLLKE------------INSKKEISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSF 346
           L+L L E            + +  + S P       +  K DL  +     + +  IS+ 
Sbjct: 300 LVLWLVEGEQAADPASMRSLWTSGDGSHPSGGSVWIVRNKIDLGEFGDEGPQGEFGISAS 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
            G+G+ EL++ +    +  F     ++ +  R    L Q    L   SL     G ++ A
Sbjct: 360 RGDGIRELVDALVKFSAEFFGTSEGALVTRARQRDLLRQASDSLRR-SLELVGEGEELAA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR A+ +LG++ G VDVE +L  IF KFCIGK
Sbjct: 419 EELRSAAYALGRLLGRVDVEDVLGAIFQKFCIGK 452


>gi|146328997|ref|YP_001209837.1| tRNA modification GTPase TrmE [Dichelobacter nodosus VCS1703A]
 gi|166991106|sp|A5EY43|MNME_DICNV RecName: Full=tRNA modification GTPase mnmE
 gi|146232467|gb|ABQ13445.1| tRNA modification GTPase TrmE [Dichelobacter nodosus VCS1703A]
          Length = 450

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 167/449 (37%), Positives = 258/449 (57%), Gaps = 17/449 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T      + IIR+SG     +   I  KK   PR+A L +F+ L G  +D+G+
Sbjct: 5   ETIAAIATPPGIGGVCIIRISGAQAHAIAVNITHKKNLVPRQAILSHFYDLSGEQIDQGI 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP+P SFTGED  E   HGGIAV + +L         RLA+ GEF++RAF N K+DL
Sbjct: 65  VLYFPAPHSFTGEDVVELQGHGGIAVAHALLSATLDF-GARLAHAGEFTQRAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + ++   R +   + G  S       D+L  +R ++EA LDFSE+E + 
Sbjct: 124 AQAEAVADLIHARSQDALRAANRSLQGVFSQKIDALADELLRLRVYVEASLDFSEDE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                ++   ++         ++Q + G+++ +G  +V+ G  NAGKSSL NAL  ++ A
Sbjct: 183 FLGEGKIREKLVDSLQKTQQLLAQSQQGQLLNDGIHLVLAGKPNAGKSSLLNALLGEERA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT   GTTRD++  D  ++G  V +SDTAG+RE+ D+VE+EGI+R+F  V+ AD++LLL
Sbjct: 243 IVTPQAGTTRDIVREDWIIDGIPVHLSDTAGLRESQDLVEQEGIRRSFDAVKRADIVLLL 302

Query: 306 KE------------INSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
            +            ++ ++E+     +  F+ +  K+DL    T      IS+ TG G+E
Sbjct: 303 ADGSARDNDARAEFVSLQEELHQLAPHAQFLVVYNKADLVDEQTAGDGLWISAKTGAGIE 362

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRL 411
            L+ KI + L+ K +       + KRH++ L     +L+ A    E+    +++AE LRL
Sbjct: 363 ILLKKIAT-LAGKNQHEETVFIARKRHIHALESVEAHLQRALQQLEQFFVAELVAEELRL 421

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A ++LG ITG V  + LLD IFS FCIGK
Sbjct: 422 AHLALGTITGTVSSDDLLDEIFSGFCIGK 450


>gi|281209236|gb|EFA83409.1| GTP-binding protein 3 [Polysphondylium pallidum PN500]
          Length = 595

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 174/503 (34%), Positives = 273/503 (54%), Gaps = 73/503 (14%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK------------------KKPFPR 46
           KETI+A+S+GA+ S ++IIR+SGP      + + +K                      PR
Sbjct: 99  KETIYALSSGAVKSGVAIIRVSGPQSMTALQQLTRKVLVTNSSTSTTTTTTSSDYNIVPR 158

Query: 47  KASLRYFFG-LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL 105
              L  F+    G  LD+G+ + F  P SFTGED  E H+HGG AV++ +LE L+K+  L
Sbjct: 159 MTVLSNFYDPTSGEQLDRGMYVWFQGPNSFTGEDVLELHIHGGRAVIHDMLEALSKVDGL 218

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           R+A PGEF++RAFENGK+DL E E LADL+ ++T  QR+++++ M G +  LY +  D+L
Sbjct: 219 RMAEPGEFTKRAFENGKMDLTEVEGLADLLDAQTNQQRKIALQQMQGSIGKLYTELRDQL 278

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
               +++EA +DF ++ +++    ++    I+ ++N I  H++ GK GE +R+G  + I+
Sbjct: 279 IRASAYMEAYIDFGDDAEIEPAVVEQSKQRIIAIRNKIMKHLTDGKRGEKLRDGATVTII 338

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  NAGKSSL N LA +  +IV+ I GTTRDV+ + LD+ GY V + DTAGIRE+ D++E
Sbjct: 339 GPPNAGKSSLINLLANRRASIVSPIEGTTRDVVEVMLDIGGYPVILGDTAGIRESTDVIE 398

Query: 286 KEGIKRTFLEVENADLILLLKEIN----SKKEISFPKNIDF-----IFIGTK-------- 328
           +EG+      V N+++ L + + N    S  +I  P  +D      IF+  K        
Sbjct: 399 REGVSMARDRVLNSEITLCVFDCNALIKSNGKIE-PMLLDLIDCNTIFLFNKIDLLLDDD 457

Query: 329 -------------SDLYSTYTEE------------YDHLISSFTGEGLEELINKIKSILS 363
                          +Y    ++            +   +S     G+++L+++I+  L 
Sbjct: 458 NNNKWKETKQQILQQIYEAIRQQPLRQSLFKVNNVFSCELSCSNQTGIKDLLSRIELYLK 517

Query: 364 NKF----KKLP-FSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGLDIIAENLRLASVSLG 417
             F    K+ P  +   HK HL +  +++  YLE       D  + I +E LR A  S+G
Sbjct: 518 ELFEINEKEAPLLTRMRHKEHLINCVESLNNYLEYC-----DTDVVIASEELRSAIRSIG 572

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
            IT  V+V+ LLD+IF  FCIGK
Sbjct: 573 SITYHVNVDDLLDVIFKDFCIGK 595


>gi|68171554|ref|ZP_00544931.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658612|ref|YP_506891.1| tRNA modification GTPase TrmE [Ehrlichia chaffeensis str. Arkansas]
 gi|123494024|sp|Q2GI42|MNME_EHRCR RecName: Full=tRNA modification GTPase mnmE
 gi|67999020|gb|EAM85694.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Ehrlichia chaffeensis str. Sapulpa]
 gi|88600069|gb|ABD45538.1| tRNA modification GTPase TrmE [Ehrlichia chaffeensis str. Arkansas]
          Length = 439

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 175/451 (38%), Positives = 254/451 (56%), Gaps = 31/451 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+ T    S +++IR+SG    +            PR A+    +  DG ++D+ ++
Sbjct: 3   TIFALCTPWGRSGVAVIRISGEDAAKAFVHFGINSSIKPRTATFTPLYDKDGEVIDEAIV 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F +P SFTGED  EFH HG  AV+  IL EL K+     A PGEFS RAF N K+DL 
Sbjct: 63  VYFVAPNSFTGEDVVEFHTHGSFAVIKMILAELGKI--FVPAGPGEFSLRAFLNNKVDLT 120

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
            AE++ DLI+SETEMQ + ++  MSG L  LY  W  +L  I S IEA +DF EE +   
Sbjct: 121 RAEAIVDLINSETEMQAKQAIRQMSGVLEKLYQNWRQQLIDILSNIEAYIDFPEEVNSSA 180

Query: 187 FSSKE-VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
            ++ + +LN+   L+  + SH++  + GE +R G  + ILG  N+GKS+LFN LAK+D+A
Sbjct: 181 IANIDYLLNN---LQKSLESHLNDDRRGERLRQGIYVTILGEPNSGKSTLFNHLAKRDIA 237

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++  GTTRD L   +D+ GY + I DTAGIRE+ D VE+EGIKR  L+ ENAD  +++
Sbjct: 238 IVSEYAGTTRDPLEAHIDVAGYPIIIIDTAGIRESTDPVEQEGIKRAKLKAENADFKIVM 297

Query: 306 ----------KEINS---KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
                     +EI S    K I      D I   T   L   +   +   IS +   G+E
Sbjct: 298 LPYEKRDIFNREIMSLIDDKSICILSKADNI---TDQKLIPVFDFSFIP-ISVYCNIGIE 353

Query: 353 ELINKIKSILSNKFKKL---PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            L+N IK  +   F+     PF     +R   H+  T+  ++   L+     ++I++E+L
Sbjct: 354 NLLNLIKQKVEKDFQFCNTDPFITSERQRK--HIQNTLNIIKSVDLS---LPMEIVSEDL 408

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           RL+   LGK+ G +  + +LD +F KFCIGK
Sbjct: 409 RLSVRELGKVVGVISDDDILDNVFGKFCIGK 439


>gi|156548514|ref|XP_001606101.1| PREDICTED: similar to GTP binding protein (mitochondrial), putative
           [Nasonia vitripennis]
          Length = 478

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 175/474 (36%), Positives = 266/474 (56%), Gaps = 43/474 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDK 63
           + TI+A+S+G     ++++R+SG       E +    K  PRKA LR       G  +DK
Sbjct: 10  RSTIYALSSGQGKCGVAVVRISGTDARLAIEKMTNIAKLEPRKAYLRNIRNPQTGETIDK 69

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GL + FP P SFTGEDS EF VHGG+AV+  ++  L+++   + A PGEF++RAF + K+
Sbjct: 70  GLCLWFPGPNSFTGEDSVEFQVHGGVAVLASLMSALSQL-QFQPALPGEFTKRAFFHDKL 128

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++    G LS+LY  W   L    + IEA +DF EEE+
Sbjct: 129 DLTEIEGLADLIHAETEQQRKQALLQAHGNLSALYSSWRAILLKCLAHIEAYIDFGEEEN 188

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +++   ++   D+  L   I  H+S G+ GEI+RNG + VILG  N GKSSL N L +++
Sbjct: 189 IESQVFEQCNIDLKDLTKQIEKHLSDGRKGEILRNGIRTVILGEPNVGKSSLLNRLVQRN 248

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
            AIVT IPGTTRDV+ +  ++ GY + ++DTAG+ + T+DI+E EGIKR   +   AD I
Sbjct: 249 AAIVTSIPGTTRDVVELTANISGYPIVLADTAGLNKLTEDIIEIEGIKRARDQASKADFI 308

Query: 303 LLLKEINSKKEI-----------SFPKNIDF--------------IFIGTKSDLYS---- 333
           +L+  +N+++ +           S+ K+++               + +  K DL      
Sbjct: 309 ILV--MNAEEYVKSCKKYNEYLSSYIKSLELEELILVDEQLASNVMVVVNKVDLLKETDK 366

Query: 334 -TYTEEYDHLISSFTGEGLEELINKIK----SILSNKFKKLP-FSIPSHKRHLYHLSQTV 387
            T  E     IS    EG +EL+  ++    SI  N   + P  S   H+ H+    + +
Sbjct: 367 RTLEEHNLSRISCTDEEGFQELLESMRKHFESICGNPSAENPTISQERHRNHVRACHECL 426

Query: 388 -RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +Y  + S  + D  + + ++ +R A+  +GKITG V  E++LD IF  FCIGK
Sbjct: 427 LKYFHIISNTDYD--IVLASQEIRKAAKEIGKITGHVSTEEILDTIFKNFCIGK 478


>gi|148285155|ref|YP_001249245.1| tRNA modification GTPase TrmE [Orientia tsutsugamushi str. Boryong]
 gi|205415786|sp|A5CFM7|MNME_ORITB RecName: Full=tRNA modification GTPase mnmE
 gi|146740594|emb|CAM81244.1| tRNA modification GTPase TrmE [Orientia tsutsugamushi str. Boryong]
          Length = 447

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 171/453 (37%), Positives = 256/453 (56%), Gaps = 27/453 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDKG 64
           +TIFA S+    + +++ R+SG     + E +C K    PRK   R        +++DK 
Sbjct: 4   KTIFAQSSAKGKAGVAVFRISGSLSLLIVERLCGKFNIVPRKVYYRTIRCYATSQVIDKA 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F   +SFTGED  E H HG +AV   +   + +   +RLA PGEF++RAF NGK+D
Sbjct: 64  LIVYFKGEQSFTGEDVVEIHTHGSVAVAKMLTRSILECDGIRLAEPGEFAKRAFLNGKMD 123

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE L DLI SET MQ + ++  M GEL  LY  W   L  I SFIE  +DF +EE  
Sbjct: 124 LTMAEGLVDLIESETLMQHKQAIRQMEGELEKLYSHWRGMLIKILSFIEGYIDFPDEEIP 183

Query: 185 QNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           Q+    +K ++N+   L  +IS+H+   + GE++R+G  + I G +N GKSSL N L  +
Sbjct: 184 QSVLREAKSIINN---LTREISNHLGDTRKGEVLRHGIVLAITGETNTGKSSLLNYLTMR 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DIPGTTRDV+   LD+ GY + + DTAGIRE+DD +E+EGIKR+ +  +N+D+ 
Sbjct: 241 EAAIVSDIPGTTRDVIEAHLDIGGYPIIVRDTAGIRESDDPIEQEGIKRSLVAFKNSDIR 300

Query: 303 LLL---KEINSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDH----------LISSFT 347
           +L+     INS  +       ++  I +  K DL +    +YD            +S   
Sbjct: 301 ILMIDATNINSVNQTIAHLLNDVYTIIVINKIDLVNY---KYDSSILPCDKPIVAVSLLK 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
             GL+ L+++I S  + K    P ++P+  R  Y  S   + LE+  L   +  L + AE
Sbjct: 358 QVGLDRLMSEIVS-YAEKIAD-PGNVPAITRERYRNSLN-KALELLQLVNLENDLVLAAE 414

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LR+A   L  ITG + ++ +L  IF+ FCIGK
Sbjct: 415 DLRMAIRYLEHITGKIKIDDILAEIFASFCIGK 447


>gi|294789735|ref|ZP_06754966.1| tRNA modification GTPase TrmE [Simonsiella muelleri ATCC 29453]
 gi|294482301|gb|EFG29997.1| tRNA modification GTPase TrmE [Simonsiella muelleri ATCC 29453]
          Length = 457

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 171/457 (37%), Positives = 260/457 (56%), Gaps = 30/457 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T +    + +IRLSG       + I   K P PR A    F    G+ +D GLL
Sbjct: 8   TIAAIATASGRGGVGVIRLSGKDLLPFVQRITGGKIPKPRTALYTDFLDAHGKTIDNGLL 67

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F +P SFTGED  E   HGG  V+  +L+   ++   R+A  GEF++RAF N KIDL 
Sbjct: 68  LYFAAPASFTGEDVIELQGHGGQIVLQMLLQRCLEL-GARIAEAGEFTKRAFLNNKIDLA 126

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AES+ADLI + ++   R+++  + GE S+   Q ++ L  +R  +EA LDF EE D+  
Sbjct: 127 QAESVADLIDASSQQAARMAIRSLKGEFSNQIHQLVEDLITLRMLVEATLDFPEE-DIDF 185

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             S +    +  L+N ++  ++  + G I+R G  +V++G  N GKSSL NALA  DVAI
Sbjct: 186 LQSADAKGKLRALQNQLAHILTNAQQGAILREGMTVVLVGAPNVGKSSLLNALAGDDVAI 245

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTDI GTTRD +   + L+G  + + DTAG+R+T+DIVEK GI+R+   V+NAD+ L+L 
Sbjct: 246 VTDIAGTTRDTVREQITLDGIPIHMIDTAGLRQTNDIVEKIGIERSEKAVQNADIALILI 305

Query: 307 EIN-----SKKEISF--PKNIDFIFIGTKSDLYSTYTEEYDHL-------------ISSF 346
           + +     + +EI F  P+N+  I I  K DL +   E  D+L             +S+ 
Sbjct: 306 DPDNGVNETTREILFRLPENLKRIEIQNKIDLRNEQPERVDNLSGSLKSGADTLIKLSAK 365

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LD 403
           TG GL+ L   + + +  + +     + +  RHL  L      L +A+    DCG   ++
Sbjct: 366 TGAGLDLLKQALLAQIGWQGESEGLFL-ARTRHLNALETAQFELNLAA----DCGHHQIE 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+LRLA ++  +ITG    + LL +IFS+FCIGK
Sbjct: 421 LLAEHLRLAQMACSEITGEFTADDLLGVIFSRFCIGK 457


>gi|294675621|ref|YP_003576236.1| tRNA modification GTPase TrmE [Rhodobacter capsulatus SB 1003]
 gi|294474441|gb|ADE83829.1| tRNA modification GTPase TrmE [Rhodobacter capsulatus SB 1003]
          Length = 427

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 166/439 (37%), Positives = 255/439 (58%), Gaps = 17/439 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDKG 64
           +TI+A ++G   + +++IRLSGP  ++    +C +  P PR+A++R    G D   LD+ 
Sbjct: 2   DTIYAQASGRGKAGVAVIRLSGPRAWEAVAALCGRL-PAPRQAAVRLLRIGADA--LDEA 58

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F +  SFTGE+SAE H+HG +A V  +L+ L  +  LRLA PGEF+RRA E+G++D
Sbjct: 59  LVLCFEAGRSFTGEESAELHLHGALATVAAVLKALGSLGFLRLAEPGEFTRRAMESGRLD 118

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L + E LADLI +ETE QR+ ++  +SG +  +   W  KL    + +EA +DF+ +ED+
Sbjct: 119 LSQVEGLADLIEAETEAQRKQALAVLSGSVGRMVETWRSKLIRAAALMEACIDFA-DEDL 177

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + E    +  +    S+ I +  + E +R G+++ I+G  NAGKS+L NALA ++ 
Sbjct: 178 PVDVTPEAFALLSEVAAQFSAEIGRISVTERVREGFEVAIVGRPNAGKSTLLNALAGREA 237

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI +++ GTTRDV+ + +DL G  V + DTAG+R+T+D VE  G+ R     + ADL + 
Sbjct: 238 AITSEVAGTTRDVIEVRMDLSGLAVTLLDTAGLRDTEDQVEAIGVARAIERAKRADLRVF 297

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           L + +    +  P   D +  G K+DL  +     D  +S  TGEG++ L+  I   LS 
Sbjct: 298 LLD-DGDIPLLQPIGDDLVVQG-KADLGGS----GDLRVSGKTGEGVDALVAAITERLSA 351

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDIIAENLRLASVSLGKITG 421
           +       + + +RH   L +    LE A L E   G   LD+ AE+ R    +L  + G
Sbjct: 352 RAAG--AGVMTRERHRDCLGRASGALESA-LEELGHGLERLDLAAEHCRTGVRALESLLG 408

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            VDVE LLD IFS FCIGK
Sbjct: 409 RVDVENLLDEIFSSFCIGK 427


>gi|325499511|gb|EGC97370.1| tRNA modification GTPase TrmE [Escherichia fergusonii ECD227]
          Length = 454

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 257/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DGR+LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGRVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|329891179|ref|ZP_08269522.1| tRNA modification GTPase TrmE [Brevundimonas diminuta ATCC 11568]
 gi|328846480|gb|EGF96044.1| tRNA modification GTPase TrmE [Brevundimonas diminuta ATCC 11568]
          Length = 437

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 171/441 (38%), Positives = 263/441 (59%), Gaps = 12/441 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T     AI+++RLSGP+       +       PR AS+R     + R++D+ L
Sbjct: 3   DTIFALATPPGRGAIAVLRLSGPATETTLTALGAGGL-TPRLASVRSLRHEE-RLIDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +P S+TGEDSAE H+HGG AVV      L  +  LR A PGEF+RRAF+NG++DL
Sbjct: 61  VLRFIAPRSYTGEDSAELHLHGGRAVVEAASAALIAL-GLRPAEPGEFTRRAFQNGRMDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI +ET+ Q+  ++  + G LS+ Y  +   L    S +EA++DF +EE   
Sbjct: 120 AQAEAVADLIDAETDAQKSQALGQLDGALSAAYAGFRRDLLKALSLVEAEIDFPDEEVPD 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           N + +     +  L  D+ + ++    G  +R GY+IV++G +NAGKSSLFNAL  ++ A
Sbjct: 180 NLA-RTAGPILDALAADLRAALADSDRGRRVREGYRIVLIGETNAGKSSLFNALVAREAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT I GTTRDVL  D+ + GY V +SDTAG+R++DD VE EGI+R  L  E ADL L +
Sbjct: 239 IVTPIAGTTRDVLDADIMIGGYAVTLSDTAGLRDSDDPVEAEGIRRARLRAEGADLRLWV 298

Query: 306 K----EINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-ISSFTGEGLEELINKIK 359
           +    E ++     F ++ D   +  KSDL +  T  + + L +S+ TG+GL EL + I 
Sbjct: 299 RSPSTEGDTDPAFGFIRSSDLQVL-NKSDLGAVATAPDLEALSVSTTTGQGLSELHDWIA 357

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
           + L+       F   + +RH   L++ +  +E       D   ++  ++LR A+ +L ++
Sbjct: 358 ARLARDLSGADFPAVTRERHRRRLAEALAAVEAGR-RALDLAPEMAGDDLRRAADALARV 416

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG + VE +L  +FS FCIGK
Sbjct: 417 TGAIGVEDILGEVFSSFCIGK 437


>gi|312174334|emb|CBX82587.1| tRNA modification GTPase trmE [Erwinia amylovora ATCC BAA-2158]
          Length = 474

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 172/460 (37%), Positives = 257/460 (55%), Gaps = 26/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH  +TI A +T      + I+R+SG    +V + +  K  P PR A    F   DG  
Sbjct: 21  MNH-SDTIVAQATPPGRGGVGILRVSGNKAARVAQLLLGKL-PKPRHADYLPFCDADGST 78

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+ANPGEFS RAF N
Sbjct: 79  LDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 138

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 139 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRINHLVEALTHLRIYVEAAIDFPD 198

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  S+ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 199 EE-IDFLSDGKIEAQLHQVIADLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 257

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 258 GREAAIVTDIAGTTRDVLREHIQIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 317

Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYS---TYTEEYDHL---I 343
            +L +      +     EI        P+ +    +  K+D+       +E   HL   +
Sbjct: 318 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIREISEVNGHLLIRL 377

Query: 344 SSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400
           S+ TGEG+E L N +K  LS  +   +     + +RHL  L     +L+     L     
Sbjct: 378 SARTGEGIENLRNHLK--LSMGWHGSMEGGFLARRRHLQALELAATHLQQGKHQLLAARA 435

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 436 G-ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 474


>gi|121606994|ref|YP_984323.1| tRNA modification GTPase TrmE [Polaromonas naphthalenivorans CJ2]
 gi|205415792|sp|A1VUS4|MNME_POLNA RecName: Full=tRNA modification GTPase mnmE
 gi|120595963|gb|ABM39402.1| tRNA modification GTPase trmE [Polaromonas naphthalenivorans CJ2]
          Length = 478

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 171/475 (36%), Positives = 256/475 (53%), Gaps = 47/475 (9%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A++T      + I+RLSG     V + +C +K   PR+A+   F    G+I+DKGL I
Sbjct: 9   IVAIATAPGRGGVGIVRLSGQRIAPVVQALCGRKLS-PRQATYLPFRDAHGQIIDKGLAI 67

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-------------MPNLRLANPGEFS 114
            FP+P S+TGED  E   HGG  V+  +L    +             +  LR+A PGEF+
Sbjct: 68  FFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAALDPATGQPVLAQLRVAEPGEFT 127

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF N KIDL +AE++ADLI + TE   R +   MSGE S      +++L H+R  +EA
Sbjct: 128 ERAFLNDKIDLAQAEAIADLIDASTETAARSAARSMSGEFSQAVNTLLEQLIHLRMLVEA 187

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LDF EE D+      +    +L L+  ++S +++   G I+R G K+VI G  N GKSS
Sbjct: 188 TLDFPEE-DIDFLQQADAQGQLLRLQATLASVLARATQGAILREGIKVVIAGQPNVGKSS 246

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NALA  ++AIVT + GTTRD ++  + +EG  + + DTAG+RE  D VEK GI+R + 
Sbjct: 247 LLNALAGAELAIVTPVAGTTRDKVSQLIQIEGVPLHVVDTAGLREALDEVEKIGIQRAWT 306

Query: 295 EVENADLILLLKE----------------------INSKKEISFPKNIDFIFIGTKSDLY 332
           E+E+AD +L L +                      + S   +  PKN   I +  KSD+ 
Sbjct: 307 EIESADAVLFLHDLARHDATENPLYAINYIADDARLQSALALKLPKNTAIIDVWNKSDMA 366

Query: 333 STYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVR 388
                   +   LIS+ TG GL+ L  ++  ++   ++  P  +  + +RH+  L ++V+
Sbjct: 367 GPELLRQVNGGVLISAKTGAGLQALREQLLRVVG--WQAAPEGVFMARERHVSAL-RSVQ 423

Query: 389 YLEMASLNEKDC---GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              + + N+       LD++AE+LR A + L  ITG  + + LL  IFSKFCIGK
Sbjct: 424 IQLLTAQNQLQAAVPALDLLAEDLRQAQLHLSSITGAFNADDLLGEIFSKFCIGK 478


>gi|73666665|ref|YP_302681.1| tRNA modification GTPase TrmE [Ehrlichia canis str. Jake]
 gi|123615194|sp|Q3YT72|MNME_EHRCJ RecName: Full=tRNA modification GTPase mnmE
 gi|72393806|gb|AAZ68083.1| tRNA modification GTPase trmE [Ehrlichia canis str. Jake]
          Length = 441

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 175/451 (38%), Positives = 259/451 (57%), Gaps = 31/451 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+ T    S +++IR+SG    +            PR A+  + +   G I+D+ ++
Sbjct: 5   TIFALCTPWGKSGVAVIRVSGKDAAKAFLHFGISSSIKPRTATFAHLYNSKGEIIDEVII 64

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F +P SFTGED  EFH HG +AV+  IL EL K+     A PGEFS RAF N K+DL 
Sbjct: 65  VYFVAPSSFTGEDVVEFHTHGSLAVIKMILAELGKI--FVPAGPGEFSLRAFLNNKVDLT 122

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
            AE++ DLI+SETEMQ + ++  MSG L  LY  W  +L  I S IEA +DF EE +   
Sbjct: 123 RAEAIVDLINSETEMQAKQAIRQMSGALEKLYQSWRQQLIDILSNIEAYIDFPEEVNSAA 182

Query: 187 FSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
            ++   +LN+   L+  +  H++  + GE +R G  I I+G  N+GKS+LFN LAK+D+A
Sbjct: 183 LANIGYLLNN---LQESLECHLNDDRKGERLRQGIYIAIVGEPNSGKSTLFNHLAKRDIA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++  GTTRD L   +D+ GY + I DTAGIR++ D++E+EGI+R  L+ ENAD  +++
Sbjct: 240 IVSEYAGTTRDTLEAHIDVAGYPIVIIDTAGIRDSADLIEQEGIRRAKLKAENADFKIVM 299

Query: 306 ----------KEINS---KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
                      EI +   +K I      D I   T+ +L S +   +   IS     G+E
Sbjct: 300 LPYEKRNVFNNEIMNLIDEKSICVLSKADNI---TEHELISIFNFSFVP-ISVCCNRGIE 355

Query: 353 ELINKIKSILSNKFK---KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            L+N IK  +   F+     PF I S ++ L H+  T+  ++   L   +  ++I+AE+L
Sbjct: 356 ILLNLIKQRVEKDFQFCSTHPF-ITSERQRL-HIQNTLNIVKNMDL---ELPMEIVAEDL 410

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           RL+   LGK+ G +  E +LD +F KFCIGK
Sbjct: 411 RLSVRELGKVVGVISDEDILDNVFGKFCIGK 441


>gi|218702556|ref|YP_002410185.1| tRNA modification GTPase TrmE [Escherichia coli IAI39]
 gi|254811479|sp|B7NR09|MNME_ECO7I RecName: Full=tRNA modification GTPase mnmE
 gi|218372542|emb|CAR20417.1| GTPase [Escherichia coli IAI39]
          Length = 454

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 171/459 (37%), Positives = 257/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLL-----------KEINSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L +            EI S+     P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWSEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|34499858|ref|NP_904073.1| tRNA modification GTPase TrmE [Chromobacterium violaceum ATCC
           12472]
 gi|46577367|sp|Q7NPT9|MNME_CHRVO RecName: Full=tRNA modification GTPase mnmE
 gi|34105708|gb|AAQ62062.1| thiophene and furan oxidation protein ThdF [Chromobacterium
           violaceum ATCC 12472]
          Length = 450

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 168/455 (36%), Positives = 258/455 (56%), Gaps = 22/455 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +++   TI AV+T      + +IR+SG       + I   K P PR A+   FF   G+ 
Sbjct: 3   LSYTPATICAVATAPGRGGVGVIRVSGKDLLPFAQAISGGKTPKPRYATYTDFFDAHGQA 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD GLL+ FP P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 63  LDNGLLLFFPGPNSFTGEDVIELQGHGGPVVLKMLLARCVEL-GARLAEPGEFTKRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + +E   R +++ + G  S      +D+L ++R  +EA LDF E
Sbjct: 122 DKLDLAQAESVADLIDASSETAARSALKSLKGAFSREVHGLVDELINLRMLVEATLDFPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +      + +  +  L+  +    +  K G I+R G  +V++G  N GKSSL NALA
Sbjct: 182 EE-IDFLKQADAIGRLRRLRAQLVGVQATAKQGAILREGMHVVLVGQPNVGKSSLMNALA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D+AIVTDI GTTRD +  ++ ++G  V I DTAG+R+TDD+VEK GI+RT+  VE AD
Sbjct: 241 GDDIAIVTDIAGTTRDTVREEIVIDGVPVHIIDTAGLRDTDDVVEKIGIERTWQAVERAD 300

Query: 301 LILLLKEINSKKEIS---------FPKNIDFIFIGTKSDL---YSTYTEEYDH---LISS 345
           L LLL  ++S++ ++          P  +  + +  K DL    +   E+  H    +S+
Sbjct: 301 LALLL--VDSREGLTAEVQSILERLPPALPRVQVFNKVDLSGEAAGLAEQDGHPLVRLSA 358

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
            T +G++ L  K+  ++          + + +RHL  +++   +LE+A  + +   ++I 
Sbjct: 359 RTHDGVDILKAKLLEMIGYSGADEGVFL-ARQRHLDAIARAADHLELAEADWEQ--VEIF 415

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A  +L +ITG    + LL +IFS+FCIGK
Sbjct: 416 AEELRMAQNALSEITGEFSADDLLGVIFSRFCIGK 450


>gi|33598900|ref|NP_886543.1| tRNA modification GTPase TrmE [Bordetella parapertussis 12822]
 gi|46577407|sp|Q7W2J0|MNME_BORPA RecName: Full=tRNA modification GTPase mnmE
 gi|33575030|emb|CAE39696.1| putative tRNA modification GTPase [Bordetella parapertussis]
          Length = 450

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 171/439 (38%), Positives = 252/439 (57%), Gaps = 25/439 (5%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
           I ++R+SGP   ++ + +  +  P  PR A    F   DG ++D+GL I F +P S+TGE
Sbjct: 19  IGVVRISGPDLAELAQRLFGR--PLTPRHAHYLPFRAADGEVIDEGLAIYFRAPHSYTGE 76

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADLI 135
           D  E   HGG AV+  IL    +  +   LR A PGEF+RRAF N ++DL +AE++ADLI
Sbjct: 77  DVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEAVADLI 136

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED--VQNFSSKEVL 193
            + +E   R +M  +SGE S       D++ H+R  +EA LDF EEE   ++ + ++  L
Sbjct: 137 DASSEAAARGAMASLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDFLEKYQARPTL 196

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
                L +D+ + I+Q + G I+R G  +V+ G  N GKSSL NALA  D+AIVT I GT
Sbjct: 197 Q---ALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPIAGT 253

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           TRD +  ++ ++G  + I DTAG+R+TDD VE  GI+RT+ E+E ADLIL L+++    +
Sbjct: 254 TRDKVVQEIHIDGVPLHIVDTAGLRDTDDAVESIGIERTWKEIERADLILHLQDVTQPPD 313

Query: 314 -------ISFPKNIDFIFIGTKSDLY-STYTEEYDHL-ISSFTGEGLEELINKIKSILS- 363
                     P     + +  K DL  + +  + D L IS+  G GL+ L  ++  +   
Sbjct: 314 HLDAQIVRRLPARTPVLNVFNKVDLLDAAFQGQPDSLAISARGGIGLDALRQRLLQLAGW 373

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITG 421
           N   + P+   + +RHL+ L Q  ++LE+A+    E D  LD+ AE LRLA  +L  ITG
Sbjct: 374 NPGAESPWL--ARERHLHALQQAAQHLEIATEHAREDDRVLDLFAEELRLAHEALTGITG 431

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               + LL  IFS FCIGK
Sbjct: 432 KFTSDDLLGEIFSSFCIGK 450


>gi|33603979|ref|NP_891539.1| tRNA modification GTPase TrmE [Bordetella bronchiseptica RB50]
 gi|46577412|sp|Q7WDI4|MNME_BORBR RecName: Full=tRNA modification GTPase mnmE
 gi|33568955|emb|CAE35369.1| putative tRNA modification GTPase [Bordetella bronchiseptica RB50]
          Length = 450

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 171/439 (38%), Positives = 252/439 (57%), Gaps = 25/439 (5%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
           I ++R+SGP   ++ + +  +  P  PR A    F   DG ++D+GL I F +P S+TGE
Sbjct: 19  IGVVRISGPDLAELAQRLFGR--PLTPRHAHYLPFRAADGEVIDEGLAIYFRAPHSYTGE 76

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADLI 135
           D  E   HGG AV+  IL    +  +   LR A PGEF+RRAF N ++DL +AE++ADLI
Sbjct: 77  DVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEAVADLI 136

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED--VQNFSSKEVL 193
            + +E   R +M  +SGE S       D++ H+R  +EA LDF EEE   ++ + ++  L
Sbjct: 137 DASSEAAARGAMTSLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDFLEKYQARPTL 196

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
                L +D+ + I+Q + G I+R G  +V+ G  N GKSSL NALA  D+AIVT I GT
Sbjct: 197 Q---ALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPIAGT 253

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           TRD +  ++ ++G  + I DTAG+R+TDD VE  GI+RT+ E+E ADLIL L+++    +
Sbjct: 254 TRDKVVQEIHIDGVPLHIVDTAGLRDTDDAVESIGIERTWKEIERADLILHLQDVTQPPD 313

Query: 314 -------ISFPKNIDFIFIGTKSDLY-STYTEEYDHL-ISSFTGEGLEELINKIKSILS- 363
                     P     + +  K DL  + +  + D L IS+  G GL+ L  ++  +   
Sbjct: 314 HLDAQIVRRLPARTPVLNVFNKVDLLDAAFQGQPDSLAISARGGIGLDALRQRLLQLAGW 373

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITG 421
           N   + P+   + +RHL+ L Q  ++LE+A+    E D  LD+ AE LRLA  +L  ITG
Sbjct: 374 NPGAESPWL--ARERHLHALQQAAQHLEIATEHAREDDRVLDLFAEELRLAHEALTGITG 431

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               + LL  IFS FCIGK
Sbjct: 432 KFTSDDLLGEIFSSFCIGK 450


>gi|326404882|ref|YP_004284964.1| tRNA modification GTPase MnmE [Acidiphilium multivorum AIU301]
 gi|325051744|dbj|BAJ82082.1| tRNA modification GTPase MnmE [Acidiphilium multivorum AIU301]
          Length = 433

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 173/451 (38%), Positives = 254/451 (56%), Gaps = 38/451 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR--ILD 62
            + IFA ++G +  AIS++RLSG    +V   +     P PR+ASLR F   DGR  I+D
Sbjct: 6   PDVIFAPASG-VGGAISLLRLSGAGVARVIGALAGSL-PAPRRASLRSFR--DGRRGIID 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +GLL+ FP P S TGED AEFH+HGG AV   I   L  +   R A PGEFSRRAF N +
Sbjct: 62  RGLLLWFPGPASVTGEDYAEFHLHGGRAVRAAITAALLDL-GARPAEPGEFSRRAFLNSR 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DLLEAE +ADLI +ETE QR+L+++   G +S     W + L  + + + A +DF++E 
Sbjct: 121 LDLLEAEGIADLIDAETEAQRQLALDLAGGAMSRAVAAWREALIGLMAQLAALIDFADE- 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+       +L  +  L+++I + I  G   E +R G +IV+LG  NAGKS+L NALA +
Sbjct: 180 DLPAEVEAAMLASMARLRDEIVAAIGAGLAAERLREGVEIVVLGAPNAGKSTLVNALAGE 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +VAIV+DIPGTTRD + + LDL G  V++ DTAG+R +DD +E EG++R       ADL+
Sbjct: 240 EVAIVSDIPGTTRDAIGVRLDLGGVPVRLVDTAGLRRSDDAIEAEGVRRAEAHARRADLL 299

Query: 303 LLLKEINSKKEISF---PKNIDFIFIGTKSDL----------YSTYTEEYDHLISSFTGE 349
           +L     +  + +F   P ++  + I TK+DL           S  T      + +    
Sbjct: 300 IL---CGAAPDFAFPDAPADVPALRIATKADLGGAVPAAMLAVSARTGAGLADLLAALRA 356

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            +E L+ +           LP       R +  L      L+ A   +     ++ AE +
Sbjct: 357 RVEALVER------GAGPALP-----RPRQIACLRDVAAALDRALAIDVP---ELRAEEM 402

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + A+V+L ++TG + VE +LD +FS FCIGK
Sbjct: 403 QAAAVALARLTGTIGVEDVLDQVFSSFCIGK 433


>gi|56417300|ref|YP_154374.1| tRNA modification GTPase TrmE [Anaplasma marginale str. St. Maries]
 gi|255004780|ref|ZP_05279581.1| tRNA modification GTPase TrmE [Anaplasma marginale str. Virginia]
 gi|81821241|sp|Q5P9B1|MNME_ANAMM RecName: Full=tRNA modification GTPase mnmE
 gi|56388532|gb|AAV87119.1| thiophene and furan oxidation protein [Anaplasma marginale str. St.
           Maries]
          Length = 443

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 168/448 (37%), Positives = 254/448 (56%), Gaps = 22/448 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+ST    S +++IR+SG    +  + +  K+    R A+ +  +    + +D+ +
Sbjct: 5   DTIFALSTPMGKSGVAVIRVSGHDALKSMQLLGVKEPVRSRVATCKTLYDKKRQPIDQAV 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED  E  VHG +AV+  + EEL  +   R+A PGEFS RAF NGKIDL
Sbjct: 65  VLYFPGPGSFTGEDVVELQVHGSLAVIRLLFEELQTV--FRIAEPGEFSLRAFLNGKIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE +ADL++SETE Q R +    SG L  LY +W   L  I S +EA +DF ++   Q
Sbjct: 123 TRAEGIADLVNSETEAQLRQAFAQSSGFLERLYEEWRSSLVDILSDLEAYIDFPDDVSPQ 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  V + +  L N +  H+  G  GE +R+G ++ ILG  N GKS+LFN LA++D+A
Sbjct: 183 ILRS--VHDRVKELHNSLERHLDDGHRGERLRHGMRVAILGKPNVGKSTLFNHLARRDMA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++ PGTTRDVL   +D+ GY   + DTAGIRE+ D VE+EGI R   E   AD+ ++L
Sbjct: 241 IVSEYPGTTRDVLEAHVDIGGYPFIVVDTAGIRESTDFVEREGIMRAKSEAATADIRIML 300

Query: 306 KEINSKKEISFPKNID------FIFIGTKSDLYSTYTEEYD-------HLISSFTGEGLE 352
              +    +   + I+       I++ +K+D  S    E         +L+S  T  G++
Sbjct: 301 FPHSEAGNLGVHEAIEGGDDGKTIYVLSKAD--SAKEGETRIIEGKQFYLVSVHTNLGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            L++ +K    + F K    + + +RH  HL    + +   +    +   +I+AE LRLA
Sbjct: 359 SLLSALKERAIDGFPKSGDVLITSQRHRGHLQSAAKVISDIT---DEMPAEIVAEYLRLA 415

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +GK+TG V  + +LD IF +FCIGK
Sbjct: 416 TKEIGKVTGAVYGDDILDNIFKRFCIGK 443


>gi|85375437|ref|YP_459499.1| tRNA modification GTPase TrmE [Erythrobacter litoralis HTCC2594]
 gi|122543372|sp|Q2N6I9|MNME_ERYLH RecName: Full=tRNA modification GTPase mnmE
 gi|84788520|gb|ABC64702.1| tRNA modification GTPase [Erythrobacter litoralis HTCC2594]
          Length = 424

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 165/437 (37%), Positives = 244/437 (55%), Gaps = 16/437 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETIFA+S+GA P+AI +IR+SG       E +     P  RKA+LR     +G+ LD  L
Sbjct: 2   ETIFALSSGAPPAAIGVIRISGTEARGALEALAGSV-PDARKAALRRLRDGEGKTLDDAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++  P P++ TGED  E H HGG AV+  I   L  MP LR A PGEF+RRAF NG+IDL
Sbjct: 61  VLWLPGPDNATGEDCVELHCHGGRAVIAAIERTLGTMPGLRRAEPGEFTRRAFANGRIDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE LADL+ +ETE+QR++      G LS L G W +++  + + +E+ LDFS+E+DV 
Sbjct: 121 AEAEGLADLLFAETELQRQVLQASAGGRLSELVGGWRERVLALSAQVESALDFSDEDDVD 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +      D+  L +++   + + ++ E +R+G ++V  G  NAGKS+LFNAL + + A
Sbjct: 181 ELAPA-FYTDVSTLADELGEWLERPQV-ERLRDGVRVVFAGPPNAGKSTLFNALLQSEAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILL 304
           IV+ I GTTRDVL   +   G    + DTAG+ E  DD +E+ GI R    + +AD++L 
Sbjct: 239 IVSPIAGTTRDVLERPVAFGGTPFTLIDTAGLHEGGDDSIERIGIDRARAALRDADIVLW 298

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILS 363
           L       E   P N     I  +SD+     +    L +S+ TGEG++ L+  ++    
Sbjct: 299 L-----GPEGEGPDNA--WEIDAQSDIDERTAKSAPRLRLSAKTGEGIDALVRDLRDAAR 351

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
           +   + P  +  + R    LS+    L   +  +    L I AE+LR A  +  + TG  
Sbjct: 352 DLLPR-PGDVAVNARQHALLSEAAGELAEITRGQD---LLITAEHLRTARSAFDRFTGRA 407

Query: 424 DVEQLLDIIFSKFCIGK 440
             E +LD +F +FCIGK
Sbjct: 408 TTEDMLDALFGRFCIGK 424


>gi|74314021|ref|YP_312440.1| tRNA modification GTPase TrmE [Shigella sonnei Ss046]
 gi|123615900|sp|Q3YWA7|MNME_SHISS RecName: Full=tRNA modification GTPase mnmE
 gi|73857498|gb|AAZ90205.1| GTP-binding protein in thiophene and furan oxidation [Shigella
           sonnei Ss046]
 gi|323173325|gb|EFZ58954.1| tRNA modification GTPase TrmE [Escherichia coli LT-68]
          Length = 454

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG+E L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|148261393|ref|YP_001235520.1| tRNA modification GTPase TrmE [Acidiphilium cryptum JF-5]
 gi|205829064|sp|A5G169|MNME_ACICJ RecName: Full=tRNA modification GTPase mnmE
 gi|146403074|gb|ABQ31601.1| tRNA modification GTPase trmE [Acidiphilium cryptum JF-5]
          Length = 433

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 172/447 (38%), Positives = 250/447 (55%), Gaps = 32/447 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR--ILDK 63
           + IFA ++G +  AIS++RLSG    +V   +     P PR+ASLR F   DGR  I+D+
Sbjct: 7   DVIFAPASG-VGGAISLLRLSGAGVARVIGALAGSL-PAPRRASLRSFR--DGRRGIIDR 62

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P S TGED AEFH+HGG AV   I   L  +   R A PGEFSRRAF N ++
Sbjct: 63  GLLLWFPGPASVTGEDYAEFHLHGGRAVRAAITAALLDL-GARPAEPGEFSRRAFLNSRL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DLLEAE +ADLI +ETE QR+L+++   G +S     W + L  + + + A +DF++E D
Sbjct: 122 DLLEAEGIADLIDAETEAQRQLALDLAGGAMSRAVAAWREALIGLMAQLAALIDFADE-D 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +       +L  +  L+++I + I  G   E +R G +IV+LG  NAGKS+L NALA ++
Sbjct: 181 LPAEVEAAMLASMARLRDEIVAAIGAGLAAERLREGVEIVVLGAPNAGKSTLVNALAGEE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIV+DIPGTTRD + + LDL G  V++ DTAG+R +DD +E EG++R       ADL++
Sbjct: 241 VAIVSDIPGTTRDAIGVRLDLGGVPVRLVDTAGLRRSDDAIEAEGVRRAEAHARRADLLI 300

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDL----------YSTYTEEYDHLISSFTGEGLEE 353
           L            P ++  + I TK+DL           S  T      + +     +E 
Sbjct: 301 LCGAAPDFVVPDAPADVPALRIATKADLGGAVPAAMLAVSARTGAGLADLLAALRARVEA 360

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L+ +           LP       R +  L      L+ A   +     ++ AE ++ A+
Sbjct: 361 LVER------GAGPALP-----RPRQIACLRDVAAALDRALAIDVP---ELRAEEMQAAA 406

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
           V+L ++TG + VE +LD +FS FCIGK
Sbjct: 407 VALARLTGTIGVEDVLDQVFSSFCIGK 433


>gi|300932339|ref|ZP_07147606.1| tRNA modification GTPase TrmE [Escherichia coli MS 187-1]
 gi|300459909|gb|EFK23402.1| tRNA modification GTPase TrmE [Escherichia coli MS 187-1]
          Length = 474

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 23  DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 81

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 82  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 141

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 142 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 200

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 201 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 257

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 258 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 317

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 318 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 377

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG+E L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 378 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 436

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 437 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 474


>gi|323164682|gb|EFZ50477.1| tRNA modification GTPase TrmE [Shigella sonnei 53G]
          Length = 454

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGGVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG+E L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|157163187|ref|YP_001460505.1| tRNA modification GTPase TrmE [Escherichia coli HS]
 gi|194435686|ref|ZP_03067789.1| tRNA modification GTPase TrmE [Escherichia coli 101-1]
 gi|218697429|ref|YP_002405096.1| tRNA modification GTPase TrmE [Escherichia coli 55989]
 gi|253775659|ref|YP_003038490.1| tRNA modification GTPase TrmE [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163658|ref|YP_003046766.1| tRNA modification GTPase TrmE [Escherichia coli B str. REL606]
 gi|297520056|ref|ZP_06938442.1| tRNA modification GTPase TrmE [Escherichia coli OP50]
 gi|307313225|ref|ZP_07592850.1| tRNA modification GTPase TrmE [Escherichia coli W]
 gi|309795744|ref|ZP_07690159.1| tRNA modification GTPase TrmE [Escherichia coli MS 145-7]
 gi|312972002|ref|ZP_07786176.1| tRNA modification GTPase TrmE [Escherichia coli 1827-70]
 gi|331655368|ref|ZP_08356367.1| tRNA modification GTPase TrmE [Escherichia coli M718]
 gi|331670551|ref|ZP_08371390.1| tRNA modification GTPase TrmE [Escherichia coli TA271]
 gi|166991108|sp|A8A6G8|MNME_ECOHS RecName: Full=tRNA modification GTPase mnmE
 gi|254811477|sp|B7L851|MNME_ECO55 RecName: Full=tRNA modification GTPase mnmE
 gi|157068867|gb|ABV08122.1| tRNA modification GTPase TrmE [Escherichia coli HS]
 gi|194425229|gb|EDX41213.1| tRNA modification GTPase TrmE [Escherichia coli 101-1]
 gi|218354161|emb|CAV00765.1| GTPase [Escherichia coli 55989]
 gi|242379246|emb|CAQ34051.1| GTP-binding protein with a role in modification of tRNA, subunit of
           complex involved in modification of tRNA [Escherichia
           coli BL21(DE3)]
 gi|253326703|gb|ACT31305.1| tRNA modification GTPase TrmE [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975559|gb|ACT41230.1| tRNA modification GTPase [Escherichia coli B str. REL606]
 gi|253979715|gb|ACT45385.1| tRNA modification GTPase [Escherichia coli BL21(DE3)]
 gi|306906908|gb|EFN37417.1| tRNA modification GTPase TrmE [Escherichia coli W]
 gi|308120623|gb|EFO57885.1| tRNA modification GTPase TrmE [Escherichia coli MS 145-7]
 gi|310334379|gb|EFQ00584.1| tRNA modification GTPase TrmE [Escherichia coli 1827-70]
 gi|315063012|gb|ADT77339.1| GTPase [Escherichia coli W]
 gi|320201266|gb|EFW75847.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
           EC4100B]
 gi|323380926|gb|ADX53194.1| tRNA modification GTPase TrmE [Escherichia coli KO11]
 gi|323939230|gb|EGB35443.1| tRNA modification GTPase TrmE [Escherichia coli E482]
 gi|323959772|gb|EGB55422.1| tRNA modification GTPase TrmE [Escherichia coli H489]
 gi|323971184|gb|EGB66430.1| tRNA modification GTPase TrmE [Escherichia coli TA007]
 gi|331047383|gb|EGI19461.1| tRNA modification GTPase TrmE [Escherichia coli M718]
 gi|331062613|gb|EGI34533.1| tRNA modification GTPase TrmE [Escherichia coli TA271]
          Length = 454

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG+E L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|260072625|gb|ACX30523.1| tRNA modification GTPase [uncultured SUP05 cluster bacterium]
          Length = 447

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 174/454 (38%), Positives = 259/454 (57%), Gaps = 21/454 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H + TI A+++      I I+R+SG  C ++ + +     P PR A    FF  DG  
Sbjct: 1   MSHNETTICALASSTGQGGIGIVRVSGARCIEIAKKMLGHV-PKPRYAHYGSFFNQDGVE 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +DKG+ + FP+P SFTGED  EF  HGGI V+  +LE    + ++  A PGEFS+RAF N
Sbjct: 60  IDKGVALFFPAPNSFTGEDVLEFQGHGGILVMRSLLESAMALGSIA-AEPGEFSKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DLL+AE++ADLI + +E   R ++  +SGE S         L  +R F+EA +DFS+
Sbjct: 119 GKMDLLQAEAVADLIDASSEQSARSALRSLSGEFSDQVNALTKALIELRVFVEATIDFSD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +S+ V   +  +K  I S ++  + G I+R G  +VI G  NAGKSSL NAL 
Sbjct: 179 EE-IDFLNSEGVGLKVAHIKESIESILTSAEQGAILREGLTVVIAGKPNAGKSSLLNALT 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++  AIVTDI GTTRDVL   + + G  + I DTAG+  ++D +E+EGIKR   E+E AD
Sbjct: 238 QRSSAIVTDIAGTTRDVLKETIHVNGMPLNIIDTAGLHVSEDKIEQEGIKRAHGEIERAD 297

Query: 301 LILLLKEINSKKE-----ISFPKNIDFIFIGTKSDLYSTYT------EEYDHLISSFTGE 349
           ++L++ +   K+       +  K+   + I  K DL S  T           L+ +   +
Sbjct: 298 VVLMVFDAQDKEPDLSILPAVVKDKPLLLIKNKVDLTSESTGMSKVNGRTQILLCAKRAD 357

Query: 350 GLEELINKIKSI--LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIA 406
           GL+ L  ++  I  LS+  + +   + + KRH+  L   ++ +  A L + D G  +++A
Sbjct: 358 GLDLLRQELSDIAGLSDTGEGV---LLARKRHIVALESALKSIHSA-LEQLDNGASELVA 413

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+LR A  SLG ITG    + LL  IFS FCIGK
Sbjct: 414 EDLRQAGQSLGSITGEFSSDDLLGEIFSSFCIGK 447


>gi|332559704|ref|ZP_08414026.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides WS8N]
 gi|332277416|gb|EGJ22731.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides WS8N]
          Length = 428

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 165/438 (37%), Positives = 249/438 (56%), Gaps = 14/438 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+++    + ++++RLSGP   +  +       P  R A+LR     +G +LD+ L
Sbjct: 2   DTIYALASARGKAGVAVLRLSGPRSHEAVQAFGVPLPPL-RHAALRRLT-WNGEVLDEAL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +++F +  SFTGE SAE H+HG  A V+ +L  L+ +P LR A  GEF+RRA ENG++DL
Sbjct: 60  VLLFGAGASFTGETSAELHLHGSPAAVSSVLRVLSGLPGLRAAEAGEFTRRALENGRLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QRR +M   SG +     +W   L    + +EA +DF+ +EDV 
Sbjct: 120 AQVEGLADLIDAETEAQRRQAMRVFSGAIGERAERWRADLIRAAALLEATIDFA-DEDVP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EVL  I  L  D+   +   ++ E IR+G+++ I+G  NAGKS+L NALA+++ A
Sbjct: 179 VDVTPEVLTLIDGLLADLRREVDGSRIAERIRDGFEVAIVGAPNAGKSTLLNALARREAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL-ILL 304
           I ++I GTTRDV+ + +DL+G  V   DTAG+RET D+VE  GI+R     + ADL + L
Sbjct: 239 ITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRETSDLVESLGIERAVTRAKAADLRVFL 298

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           L +      I+     D + +  K+DL           +S  TGEG+ EL+  I   L  
Sbjct: 299 LDDSGPLSGITV--QADDLVVQGKADLRPGQGLR----LSGRTGEGVPELVAAIGERLLR 352

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITGC 422
           +         +H+RH   + + +  +E   A L       ++ A++LR A  SL  + G 
Sbjct: 353 RTAG--AGSLTHERHRLAIERAIGAMESVRAELLRGQQHTELAADDLRRAIRSLDSLVGR 410

Query: 423 VDVEQLLDIIFSKFCIGK 440
           VDVE LL  IF+ FCIGK
Sbjct: 411 VDVESLLGEIFASFCIGK 428


>gi|218707353|ref|YP_002414872.1| tRNA modification GTPase TrmE [Escherichia coli UMN026]
 gi|293407346|ref|ZP_06651268.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1412]
 gi|298383087|ref|ZP_06992682.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1302]
 gi|254811482|sp|B7NF24|MNME_ECOLU RecName: Full=tRNA modification GTPase mnmE
 gi|218434450|emb|CAR15378.1| GTPase [Escherichia coli UMN026]
 gi|291425637|gb|EFE98673.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1412]
 gi|298276923|gb|EFI18441.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1302]
          Length = 454

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 257/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P+LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPDLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|197364644|ref|YP_002144281.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|254811495|sp|B5BIL9|MNME_SALPK RecName: Full=tRNA modification GTPase mnmE
 gi|197096121|emb|CAR61717.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 454

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 259/459 (56%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +  +   +     + +RHL  L++   +LE   A L     G
Sbjct: 358 SARTGEGVDVLRNNLKQSMGFE-TNMEGGFLARRRHLQALAEAANHLEQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|300896036|ref|ZP_07114596.1| tRNA modification GTPase TrmE [Escherichia coli MS 198-1]
 gi|300360060|gb|EFJ75930.1| tRNA modification GTPase TrmE [Escherichia coli MS 198-1]
          Length = 462

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 257/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 11  DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 69

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P+LR+A PGEFS RAF N K+
Sbjct: 70  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPDLRIARPGEFSERAFLNDKL 129

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 130 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 188

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 189 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 246 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 305

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 306 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 365

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 366 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 424

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 425 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 462


>gi|308051500|ref|YP_003915066.1| tRNA modification GTPase trmE [Ferrimonas balearica DSM 9799]
 gi|307633690|gb|ADN77992.1| tRNA modification GTPase trmE [Ferrimonas balearica DSM 9799]
          Length = 455

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 169/461 (36%), Positives = 251/461 (54%), Gaps = 27/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   ++TI A +T      + I+R+SGP    V   +  K  P  R A    F    G++
Sbjct: 1   MTDHQDTIVAQATAPGQGGVGIVRVSGPLAETVAIHVLGKV-PKTRYAEYLPFKDDSGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ ++F  P SFTGED  E   HGG  V++ ++  +  +P LR A PGEFS RAF N
Sbjct: 60  LDQGIALMFKGPNSFTGEDVLELQGHGGPVVLDMLIRRILTIPGLRTARPGEFSERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R +M+ + GE S    Q +++LTH+R ++EA +DF +
Sbjct: 120 DKLDLAQAEAIADLIEASSEQAVRSAMQSLQGEFSGQIHQLVEQLTHLRIYVEAAIDFPD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE V   S   +  D+  ++  ++      + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 180 EE-VDFLSDGRIAGDLAAIETRLAEVRRSARQGALMREGMKVVIAGRPNAGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD
Sbjct: 239 GRESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWSEIAQAD 298

Query: 301 LILLL---KEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDH-------- 341
            +LL+    E ++    +         P+ +    I  K+DL     E  DH        
Sbjct: 299 RVLLMVDGTETDATDPAAIWPELIDRLPQEMGLTLIRNKADLTG---EAVDHGQAGGHPM 355

Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
             +S+ TGEG+E L   +K+ +  +         + +RHL  L Q   +LE      E  
Sbjct: 356 FRLSAKTGEGVEALKQHLKACMGYQ-GTTEGGFMARQRHLEALQQAALHLEQGKEQLEVF 414

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 415 MAGELLAEELRLAQQALAEITGEFSSDDLLGRIFSSFCIGK 455


>gi|292901145|ref|YP_003540514.1| tRNA modification GTPase [Erwinia amylovora ATCC 49946]
 gi|291200993|emb|CBJ48132.1| probable tRNA modification GTPase [Erwinia amylovora ATCC 49946]
          Length = 454

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 171/460 (37%), Positives = 256/460 (55%), Gaps = 26/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH  +TI A +T      + I+R+SG    +V + +  K  P PR A    F   DG  
Sbjct: 1   MNH-SDTIVAQATPPGRGGVGILRVSGNKAARVAQLLLGKL-PKPRHADYLPFCDADGST 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+ANPGEFS RAF N
Sbjct: 59  LDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  S+ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLHQVIADLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIQIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 297

Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYS---TYTEEYDH---LI 343
            +L +      +     EI        P+ +    +  K+D+       +E   H    +
Sbjct: 298 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIREISEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400
           S+ TGEG+E L N +K  LS  +   +     + +RHL  L     +L+     L     
Sbjct: 358 SARTGEGIENLRNHLK--LSMGWHGSMEGGFLARRRHLQALELAATHLQQGKHQLLAARA 415

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 416 G-ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|290554|gb|AAA62057.1| 50 kD protein [Escherichia coli]
          Length = 454

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLRXXIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|293393716|ref|ZP_06638024.1| tRNA modification GTPase [Serratia odorifera DSM 4582]
 gi|291423760|gb|EFE96981.1| tRNA modification GTPase [Serratia odorifera DSM 4582]
          Length = 454

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 170/454 (37%), Positives = 251/454 (55%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +  QV + +  K  P PR A    F   DG  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRISGRAAQQVAQTLLGKL-PKPRHADYLPFRDADGATLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL
Sbjct: 64  ALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M  + G  SS   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSSRIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  + ND+ S   + + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEAQLNGVMNDLDSVRVEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAGDEVERIGIERAWNEIEQADRVLFM 302

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348
                 E     EI        P  +    +  K+D+        E   H    +S+ TG
Sbjct: 303 VDGTTTEATEPGEIWPEFMARLPATLPITVVRNKADITGEPLGLKEVNGHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           +G+E L + +K  +      +     + +RHL  L Q  ++L      L     G +++A
Sbjct: 363 QGIEVLRDHLKQSMGFT-SNMEGGFLARRRHLQALEQAAQHLVQGKEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|33594714|ref|NP_882358.1| tRNA modification GTPase TrmE [Bordetella pertussis Tohama I]
 gi|46577402|sp|Q7VSR5|MNME_BORPE RecName: Full=tRNA modification GTPase mnmE
 gi|33564790|emb|CAE44118.1| putative tRNA modification GTPase [Bordetella pertussis Tohama I]
 gi|332384125|gb|AEE68972.1| tRNA modification GTPase TrmE [Bordetella pertussis CS]
          Length = 450

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 171/439 (38%), Positives = 251/439 (57%), Gaps = 25/439 (5%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
           I ++R+SGP   ++ + +  +  P  PR A    F   DG ++D+GL I F +P S+TGE
Sbjct: 19  IGVVRISGPDLAELAQRLFGR--PLTPRHAHYLPFRAADGEVIDEGLAIYFRAPHSYTGE 76

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADLI 135
           D  E   HGG AV+  IL    +  +   LR A PGEF+RRAF N ++DL +AE++ADLI
Sbjct: 77  DVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEAVADLI 136

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED--VQNFSSKEVL 193
            + +E   R +M  +SGE S       D++ H+R  +EA LDF EEE   ++ + ++  L
Sbjct: 137 DASSEAAARGAMASLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDFLEKYQARPTL 196

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
                L +D+ + I+Q + G I+R G  +V+ G  N GKSSL NALA  D+AIVT I GT
Sbjct: 197 Q---ALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPIAGT 253

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           TRD +  ++ ++G  + I DTAG+R+TDD VE  GI+RT+ E+E ADLIL L+++    +
Sbjct: 254 TRDKVVQEIHIDGVPLHIVDTAGLRDTDDAVESIGIERTWKEIERADLILHLQDVTQPPD 313

Query: 314 -------ISFPKNIDFIFIGTKSDLY-STYTEEYDHL-ISSFTGEGLEELINKIKSILS- 363
                     P     + +  K DL  + +  + D L IS+  G GL+ L   +  +   
Sbjct: 314 HLDAQIVRRLPARTPVLNVFNKVDLLDAAFQGQPDSLAISARGGIGLDALRQHLLQLAGW 373

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITG 421
           N   + P+   + +RHL+ L Q  ++LE+A+    E D  LD+ AE LRLA  +L  ITG
Sbjct: 374 NPGAESPWL--ARERHLHALQQAAQHLEIATEHAREDDRVLDLFAEELRLAHEALTGITG 431

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               + LL  IFS FCIGK
Sbjct: 432 KFTSDDLLGEIFSSFCIGK 450


>gi|292490141|ref|YP_003533036.1| tRNA modification GTPase trmE [Erwinia amylovora CFBP1430]
 gi|291555583|emb|CBA24183.1| tRNA modification GTPase trmE [Erwinia amylovora CFBP1430]
          Length = 474

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 171/460 (37%), Positives = 256/460 (55%), Gaps = 26/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH  +TI A +T      + I+R+SG    +V + +  K  P PR A    F   DG  
Sbjct: 21  MNH-SDTIVAQATPPGRGGVGILRVSGNKAARVAQLLLGKL-PKPRHADYLPFCDADGST 78

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+ANPGEFS RAF N
Sbjct: 79  LDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 138

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 139 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAIDFPD 198

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  S+ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 199 EE-IDFLSDGKIEAQLHQVIADLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 257

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 258 GREAAIVTDIAGTTRDVLREHIQIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 317

Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYS---TYTEEYDH---LI 343
            +L +      +     EI        P+ +    +  K+D+       +E   H    +
Sbjct: 318 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIREISEVNGHSLIRL 377

Query: 344 SSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400
           S+ TGEG+E L N +K  LS  +   +     + +RHL  L     +L+     L     
Sbjct: 378 SARTGEGIENLRNHLK--LSMGWHGSMEGGFLARRRHLQALELAATHLQQGKHQLLAARA 435

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 436 G-ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 474


>gi|56415716|ref|YP_152791.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|81361369|sp|Q5PKU1|MNME_SALPA RecName: Full=tRNA modification GTPase mnmE
 gi|56129973|gb|AAV79479.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
          Length = 454

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 259/459 (56%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARGVAQEVLGKL-PKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +  +   +     + +RHL  L++   +LE   A L     G
Sbjct: 358 SARTGEGVDVLRNNLKQSMGFE-TNMEGGFLARRRHLQALAEAANHLEQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|126738505|ref|ZP_01754210.1| tRNA modification GTPase [Roseobacter sp. SK209-2-6]
 gi|126720304|gb|EBA17010.1| tRNA modification GTPase [Roseobacter sp. SK209-2-6]
          Length = 428

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 169/438 (38%), Positives = 249/438 (56%), Gaps = 14/438 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGRILDKG 64
           +TIFA+++    + +S+IRLSGP    V   IC    P P K   +R      G +LD+ 
Sbjct: 2   DTIFALASAQGKAGVSVIRLSGPESLIVANRICHY--PLPEKGRGVRRIQDQQGEVLDEA 59

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F SPESFTGE+  EF VHG  AVV+ +L  L+   +LRLA PGEF+RRA E GK+D
Sbjct: 60  LVLTFASPESFTGENVVEFQVHGSTAVVSAVLATLSDEADLRLAEPGEFTRRALEAGKLD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L + E LADLI +ETE QR+ +   +SG L  L  +W   L    S IE  +DF+ +EDV
Sbjct: 120 LSQVEGLADLIDAETEAQRKQAQVILSGGLGRLAERWRQDLIRAASLIEVTIDFA-DEDV 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + EV + +  +  D+       ++ E IR G+++ I+G  N GKS+L NALA ++ 
Sbjct: 179 PVDVTPEVSSLLEGVSQDLQRETQGVQIAERIREGFEVAIIGAPNVGKSTLLNALAGREA 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI ++  GTTRD++ + +DL G  V + DTAG+RET+D VE  GI       E+ADL + 
Sbjct: 239 AITSEYAGTTRDIIEVRMDLSGLPVTLLDTAGLRETEDHVEGIGIALAKKRAEDADLRVF 298

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           L E +   E++F      I +  K+DL     ++ ++ IS  +G GL+ L++ I   L  
Sbjct: 299 LCEEDEDLELTFCSG--DIRLKPKADLR----DDKENSISGASGYGLDSLVSAISEEL-- 350

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGC 422
           + + L   + +  RH   ++  +  L  A   L +     D+ AE++R A  +L  + G 
Sbjct: 351 RKRSLQVGVATRVRHRETMTIALSSLRQAQNVLEQGPEFYDLAAEDMRSAIRALELLVGR 410

Query: 423 VDVEQLLDIIFSKFCIGK 440
           V VE LLD IFS FC+GK
Sbjct: 411 VGVENLLDEIFSSFCLGK 428


>gi|254295495|ref|YP_003061518.1| tRNA modification GTPase TrmE [Hirschia baltica ATCC 49814]
 gi|254044026|gb|ACT60821.1| tRNA modification GTPase TrmE [Hirschia baltica ATCC 49814]
          Length = 454

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 251/451 (55%), Gaps = 18/451 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI----LD 62
           TI A+++ +  + +S+IRLSG    ++ + +  +K P  RK  +R  F          LD
Sbjct: 5   TICALASASGKAGVSVIRLSGSKAGEILQLLTAQKLPSRRKLVIRLLFHPSDSAKRDQLD 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+   P P SFTGED  EFH+HGG A+V  +++        RLA PGE++RRAFENG+
Sbjct: 65  EALVAFMPGPNSFTGEDVVEFHLHGGTAIVASVIDACLATKLCRLAEPGEYTRRAFENGR 124

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ DLI +ET+ QRR +M+   G   +    W   L    + ++A +DF +E+
Sbjct: 125 MDLTKAEAIGDLIDAETDAQRRQAMQQYDGAFHAQCLNWRSGLIDAMASLDAAIDFPDED 184

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV +         +  L   I   +     G  +R+G+KI I+G  NAGKS+L NAL  +
Sbjct: 185 DVPSGVDSRAYPLVKELITSIDLALENANAGLAVRDGFKIAIIGPPNAGKSTLINALTGR 244

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIV+ I GTTRD++ + L+L GY+V +SDTAG+R+T D +E EG++R  +    +DL 
Sbjct: 245 DAAIVSSIAGTTRDIVEVRLELGGYVVWLSDTAGLRDTGDEIEAEGVRRALVRAAESDLR 304

Query: 303 LLLKEINSK-KEISFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLEELI 355
           + +   +    ++S  ++ DF+ +  K+DL     ++ +       + S      + E +
Sbjct: 305 IFMHGYDQPLPDLSLAQDGDFL-LANKADLSDGTPQDLNLSDLDKKVFSEKVSLKMSEDV 363

Query: 356 NKIK-----SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENL 409
            +I+     +++          + S +RH   L  T   L+ A L  E D   D+IAE++
Sbjct: 364 KRIRVKLEQTVIDRMSTGASAPLVSRQRHKQLLLSTKENLQHAILAMENDFSADLIAEDI 423

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           RLA+  +GKITG +D E +LD IF +FCIGK
Sbjct: 424 RLAARDVGKITGEIDSEDVLDRIFGEFCIGK 454


>gi|324008034|gb|EGB77253.1| tRNA modification GTPase TrmE [Escherichia coli MS 57-2]
          Length = 481

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 30  DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 88

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 89  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 148

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 149 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 207

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 208 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 264

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 265 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 324

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 325 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 384

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 385 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 443

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 444 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 481


>gi|300925531|ref|ZP_07141405.1| tRNA modification GTPase TrmE [Escherichia coli MS 182-1]
 gi|300418356|gb|EFK01667.1| tRNA modification GTPase TrmE [Escherichia coli MS 182-1]
          Length = 478

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 27  DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 85

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 86  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 145

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 146 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 204

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 205 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 261

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 262 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 321

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 322 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 381

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 382 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 440

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 441 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 478


>gi|301324999|ref|ZP_07218552.1| tRNA modification GTPase TrmE [Escherichia coli MS 78-1]
 gi|300848114|gb|EFK75874.1| tRNA modification GTPase TrmE [Escherichia coli MS 78-1]
          Length = 479

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 28  DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 86

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 87  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 146

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 147 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 205

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 206 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 262

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 263 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 322

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 323 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 382

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 383 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 441

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 442 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 479


>gi|301028501|ref|ZP_07191740.1| tRNA modification GTPase TrmE [Escherichia coli MS 196-1]
 gi|299878448|gb|EFI86659.1| tRNA modification GTPase TrmE [Escherichia coli MS 196-1]
          Length = 454

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 257/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPMILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H+   +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHVLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|320180048|gb|EFW54990.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella boydii ATCC
           9905]
          Length = 454

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVDVLHNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|24114984|ref|NP_709494.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 301]
 gi|30065014|ref|NP_839185.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 2457T]
 gi|110807604|ref|YP_691124.1| tRNA modification GTPase TrmE [Shigella flexneri 5 str. 8401]
 gi|46577445|sp|Q83PL3|MNME_SHIFL RecName: Full=tRNA modification GTPase mnmE
 gi|123146522|sp|Q0SYP6|MNME_SHIF8 RecName: Full=tRNA modification GTPase mnmE
 gi|24054236|gb|AAN45201.1| GTP-binding protein in thiophene and furan oxidation [Shigella
           flexneri 2a str. 301]
 gi|30043275|gb|AAP18996.1| GTP-binding protein in thiophene and furan oxidation [Shigella
           flexneri 2a str. 2457T]
 gi|110617152|gb|ABF05819.1| GTP-binding protein in thiophene and furan oxidation [Shigella
           flexneri 5 str. 8401]
 gi|281603067|gb|ADA76051.1| tRNA modification GTPase trmE [Shigella flexneri 2002017]
 gi|313647714|gb|EFS12162.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 2457T]
 gi|332750527|gb|EGJ80936.1| tRNA modification GTPase TrmE [Shigella flexneri K-671]
 gi|332750698|gb|EGJ81106.1| tRNA modification GTPase TrmE [Shigella flexneri 4343-70]
 gi|332751721|gb|EGJ82119.1| tRNA modification GTPase TrmE [Shigella flexneri 2747-71]
 gi|332764077|gb|EGJ94314.1| tRNA modification GTPase TrmE [Shigella flexneri 2930-71]
 gi|332996037|gb|EGK15664.1| tRNA modification GTPase TrmE [Shigella flexneri VA-6]
 gi|332997083|gb|EGK16699.1| tRNA modification GTPase TrmE [Shigella flexneri K-218]
 gi|332997872|gb|EGK17480.1| tRNA modification GTPase TrmE [Shigella flexneri K-272]
 gi|333013208|gb|EGK32581.1| tRNA modification GTPase TrmE [Shigella flexneri K-304]
 gi|333013667|gb|EGK33032.1| tRNA modification GTPase TrmE [Shigella flexneri K-227]
          Length = 454

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVM---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|315296896|gb|EFU56184.1| tRNA modification GTPase TrmE [Escherichia coli MS 16-3]
          Length = 475

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 24  DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 82

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 83  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 142

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 143 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 201

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 202 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 258

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 259 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 318

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 319 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 378

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 379 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 437

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 438 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 475


>gi|170681108|ref|YP_001746036.1| tRNA modification GTPase TrmE [Escherichia coli SMS-3-5]
 gi|170767097|ref|ZP_02901550.1| tRNA modification GTPase TrmE [Escherichia albertii TW07627]
 gi|194431305|ref|ZP_03063598.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1012]
 gi|218551237|ref|YP_002385029.1| tRNA modification GTPase TrmE [Escherichia fergusonii ATCC 35469]
 gi|218691995|ref|YP_002400207.1| tRNA modification GTPase TrmE [Escherichia coli ED1a]
 gi|300824308|ref|ZP_07104424.1| tRNA modification GTPase TrmE [Escherichia coli MS 119-7]
 gi|300903017|ref|ZP_07120959.1| tRNA modification GTPase TrmE [Escherichia coli MS 84-1]
 gi|301305947|ref|ZP_07212029.1| tRNA modification GTPase TrmE [Escherichia coli MS 124-1]
 gi|331649534|ref|ZP_08350620.1| tRNA modification GTPase TrmE [Escherichia coli M605]
 gi|331665357|ref|ZP_08366258.1| tRNA modification GTPase TrmE [Escherichia coli TA143]
 gi|331679805|ref|ZP_08380475.1| tRNA modification GTPase TrmE [Escherichia coli H591]
 gi|205829138|sp|B1LL33|MNME_ECOSM RecName: Full=tRNA modification GTPase mnmE
 gi|254811480|sp|B7N211|MNME_ECO81 RecName: Full=tRNA modification GTPase mnmE
 gi|254811485|sp|B7LK49|MNME_ESCF3 RecName: Full=tRNA modification GTPase mnmE
 gi|170124535|gb|EDS93466.1| tRNA modification GTPase TrmE [Escherichia albertii TW07627]
 gi|170518826|gb|ACB17004.1| tRNA modification GTPase TrmE [Escherichia coli SMS-3-5]
 gi|194420760|gb|EDX36836.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1012]
 gi|218358779|emb|CAQ91437.1| GTPase [Escherichia fergusonii ATCC 35469]
 gi|218429559|emb|CAR10382.1| GTPase [Escherichia coli ED1a]
 gi|222035421|emb|CAP78166.1| tRNA modification GTPase trmE [Escherichia coli LF82]
 gi|281180761|dbj|BAI57091.1| GTP-binding protein [Escherichia coli SE15]
 gi|284923790|emb|CBG36888.1| probable tRNA modification GTPase [Escherichia coli 042]
 gi|300404923|gb|EFJ88461.1| tRNA modification GTPase TrmE [Escherichia coli MS 84-1]
 gi|300523195|gb|EFK44264.1| tRNA modification GTPase TrmE [Escherichia coli MS 119-7]
 gi|300838798|gb|EFK66558.1| tRNA modification GTPase TrmE [Escherichia coli MS 124-1]
 gi|312948274|gb|ADR29101.1| tRNA modification GTPase TrmE [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315254605|gb|EFU34573.1| tRNA modification GTPase TrmE [Escherichia coli MS 85-1]
 gi|320193747|gb|EFW68380.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
           WV_060327]
 gi|323944179|gb|EGB40259.1| tRNA modification GTPase TrmE [Escherichia coli H120]
 gi|323965768|gb|EGB61219.1| tRNA modification GTPase TrmE [Escherichia coli M863]
 gi|324111604|gb|EGC05585.1| tRNA modification GTPase TrmE [Escherichia fergusonii B253]
 gi|327250849|gb|EGE62551.1| tRNA modification GTPase TrmE [Escherichia coli STEC_7v]
 gi|330908023|gb|EGH36542.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
           AA86]
 gi|331042032|gb|EGI14176.1| tRNA modification GTPase TrmE [Escherichia coli M605]
 gi|331057867|gb|EGI29853.1| tRNA modification GTPase TrmE [Escherichia coli TA143]
 gi|331072977|gb|EGI44302.1| tRNA modification GTPase TrmE [Escherichia coli H591]
 gi|332083996|gb|EGI89203.1| tRNA modification GTPase TrmE [Shigella dysenteriae 155-74]
 gi|332084896|gb|EGI90079.1| tRNA modification GTPase TrmE [Shigella boydii 5216-82]
          Length = 454

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|205354570|ref|YP_002228371.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|254811492|sp|B5RFY2|MNME_SALG2 RecName: Full=tRNA modification GTPase mnmE
 gi|205274351|emb|CAR39376.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326629706|gb|EGE36049.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 454

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRHADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|194223742|ref|XP_001503159.2| PREDICTED: similar to mitochondrial GTP binding protein 2 [Equus
           caballus]
          Length = 428

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 160/436 (36%), Positives = 236/436 (54%), Gaps = 44/436 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P PR A LR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRSLTAPRDVPPPRSACLRLLSDPRTGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRSWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    +   +++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLERADSEVRELEVALGAHLRDARRGQRLRSGAHVVVAGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+   +SDTAG+RE    VE+EG++R   +V    L+L 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGVGPVEQEGVRRALPDVPP-HLLLF 333

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           L +      +                                    LE L  ++  +  +
Sbjct: 334 LPDRGGAGWL------------------------------------LEALRKELAEVCGD 357

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
                P    +  RH +HL   +  L +     KD  L + AE LR+A   L ++TG   
Sbjct: 358 PATGPPLL--TRARHQHHLQSCLDALGLYK-QAKD--LALAAEALRVARGHLTRLTGGGG 412

Query: 425 VEQLLDIIFSKFCIGK 440
            E++LD+IF  FC+GK
Sbjct: 413 TEEILDLIFRDFCVGK 428


>gi|324018442|gb|EGB87661.1| tRNA modification GTPase TrmE [Escherichia coli MS 117-3]
          Length = 479

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 28  DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 86

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 87  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 146

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 147 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 205

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 206 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 262

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 263 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 322

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 323 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 382

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 383 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 441

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 442 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 479


>gi|16762483|ref|NP_458100.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143971|ref|NP_807313.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052691|ref|ZP_03345569.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213424947|ref|ZP_03357697.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213580794|ref|ZP_03362620.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213865392|ref|ZP_03387511.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|21363008|sp|Q8Z2N8|MNME_SALTI RecName: Full=tRNA modification GTPase mnmE
 gi|25319370|pir||AE0957 thiophene and furan oxidation protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504788|emb|CAD03153.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139607|gb|AAO71173.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 454

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 258/459 (56%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAANHLEQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|300940893|ref|ZP_07155419.1| tRNA modification GTPase TrmE [Escherichia coli MS 21-1]
 gi|300454323|gb|EFK17816.1| tRNA modification GTPase TrmE [Escherichia coli MS 21-1]
          Length = 478

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 27  DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 85

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 86  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 145

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 146 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 204

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 205 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 261

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 262 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 321

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 322 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 381

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 382 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 440

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 441 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 478


>gi|300947531|ref|ZP_07161709.1| tRNA modification GTPase TrmE [Escherichia coli MS 116-1]
 gi|300452880|gb|EFK16500.1| tRNA modification GTPase TrmE [Escherichia coli MS 116-1]
          Length = 460

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 9   DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 67

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 68  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 127

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 128 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 186

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 187 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 243

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 244 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 303

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 304 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 363

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 364 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 423 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 460


>gi|204928462|ref|ZP_03219661.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204321895|gb|EDZ07093.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 454

 Score =  272 bits (695), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 258/459 (56%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +  +   +     + +RHL  L++   +LE   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFE-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|300956287|ref|ZP_07168590.1| tRNA modification GTPase TrmE [Escherichia coli MS 175-1]
 gi|300316885|gb|EFJ66669.1| tRNA modification GTPase TrmE [Escherichia coli MS 175-1]
          Length = 462

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 11  DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 69

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 70  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 129

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 130 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 188

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 189 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 246 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 305

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 306 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 365

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 366 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 424

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 425 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 462


>gi|16131574|ref|NP_418162.1| GTPase [Escherichia coli str. K-12 substr. MG1655]
 gi|82546029|ref|YP_409976.1| tRNA modification GTPase TrmE [Shigella boydii Sb227]
 gi|89110306|ref|AP_004086.1| GTPase [Escherichia coli str. K-12 substr. W3110]
 gi|170022257|ref|YP_001727211.1| tRNA modification GTPase TrmE [Escherichia coli ATCC 8739]
 gi|170083208|ref|YP_001732528.1| GTPase [Escherichia coli str. K-12 substr. DH10B]
 gi|187732019|ref|YP_001882460.1| tRNA modification GTPase TrmE [Shigella boydii CDC 3083-94]
 gi|188493740|ref|ZP_03001010.1| tRNA modification GTPase TrmE [Escherichia coli 53638]
 gi|209921183|ref|YP_002295267.1| tRNA modification GTPase TrmE [Escherichia coli SE11]
 gi|218556273|ref|YP_002389187.1| tRNA modification GTPase TrmE [Escherichia coli IAI1]
 gi|238902797|ref|YP_002928593.1| GTPase [Escherichia coli BW2952]
 gi|254038925|ref|ZP_04872977.1| tRNA modification GTPase TrmE [Escherichia sp. 1_1_43]
 gi|256021275|ref|ZP_05435140.1| tRNA modification GTPase TrmE [Shigella sp. D9]
 gi|256025562|ref|ZP_05439427.1| tRNA modification GTPase TrmE [Escherichia sp. 4_1_40B]
 gi|293413161|ref|ZP_06655827.1| tRNA modification GTPase TrmE [Escherichia coli B354]
 gi|300917463|ref|ZP_07134124.1| tRNA modification GTPase TrmE [Escherichia coli MS 115-1]
 gi|301020896|ref|ZP_07184953.1| tRNA modification GTPase TrmE [Escherichia coli MS 69-1]
 gi|301644379|ref|ZP_07244380.1| tRNA modification GTPase TrmE [Escherichia coli MS 146-1]
 gi|307140407|ref|ZP_07499763.1| tRNA modification GTPase TrmE [Escherichia coli H736]
 gi|331644431|ref|ZP_08345560.1| tRNA modification GTPase TrmE [Escherichia coli H736]
 gi|331675198|ref|ZP_08375951.1| tRNA modification GTPase TrmE [Escherichia coli TA280]
 gi|331685431|ref|ZP_08386017.1| tRNA modification GTPase TrmE [Escherichia coli H299]
 gi|332282504|ref|ZP_08394917.1| tRNA modification GTPase TrmE [Shigella sp. D9]
 gi|2851487|sp|P25522|MNME_ECOLI RecName: Full=tRNA modification GTPase mnmE
 gi|123558283|sp|Q31UW0|MNME_SHIBS RecName: Full=tRNA modification GTPase mnmE
 gi|189036202|sp|B1IX32|MNME_ECOLC RecName: Full=tRNA modification GTPase mnmE
 gi|205829137|sp|B1X9T5|MNME_ECODH RecName: Full=tRNA modification GTPase mnmE
 gi|254811481|sp|B7M559|MNME_ECO8A RecName: Full=tRNA modification GTPase mnmE
 gi|254811483|sp|B6I3T9|MNME_ECOSE RecName: Full=tRNA modification GTPase mnmE
 gi|254811497|sp|B2TUS2|MNME_SHIB3 RecName: Full=tRNA modification GTPase mnmE
 gi|259495841|sp|C4ZYY4|MNME_ECOBW RecName: Full=tRNA modification GTPase mnmE
 gi|2367268|gb|AAC76729.1| GTPase [Escherichia coli str. K-12 substr. MG1655]
 gi|81247440|gb|ABB68148.1| ThdF [Shigella boydii Sb227]
 gi|85676337|dbj|BAE77587.1| GTPase [Escherichia coli str. K12 substr. W3110]
 gi|169757185|gb|ACA79884.1| tRNA modification GTPase TrmE [Escherichia coli ATCC 8739]
 gi|169891043|gb|ACB04750.1| GTPase [Escherichia coli str. K-12 substr. DH10B]
 gi|187429011|gb|ACD08285.1| tRNA modification GTPase TrmE [Shigella boydii CDC 3083-94]
 gi|188488939|gb|EDU64042.1| tRNA modification GTPase TrmE [Escherichia coli 53638]
 gi|209914442|dbj|BAG79516.1| GTP-binding protein [Escherichia coli SE11]
 gi|218363042|emb|CAR00681.1| GTPase [Escherichia coli IAI1]
 gi|226838890|gb|EEH70917.1| tRNA modification GTPase TrmE [Escherichia sp. 1_1_43]
 gi|238861389|gb|ACR63387.1| GTPase [Escherichia coli BW2952]
 gi|260451436|gb|ACX41858.1| tRNA modification GTPase TrmE [Escherichia coli DH1]
 gi|291468294|gb|EFF10789.1| tRNA modification GTPase TrmE [Escherichia coli B354]
 gi|300398391|gb|EFJ81929.1| tRNA modification GTPase TrmE [Escherichia coli MS 69-1]
 gi|300415307|gb|EFJ98617.1| tRNA modification GTPase TrmE [Escherichia coli MS 115-1]
 gi|301077320|gb|EFK92126.1| tRNA modification GTPase TrmE [Escherichia coli MS 146-1]
 gi|309704154|emb|CBJ03501.1| probable tRNA modification GTPase [Escherichia coli ETEC H10407]
 gi|315138291|dbj|BAJ45450.1| tRNA modification GTPase TrmE [Escherichia coli DH1]
 gi|315618588|gb|EFU99174.1| tRNA modification GTPase TrmE [Escherichia coli 3431]
 gi|320174820|gb|EFW49943.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella dysenteriae
           CDC 74-1112]
 gi|320185529|gb|EFW60295.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella flexneri
           CDC 796-83]
 gi|323934942|gb|EGB31320.1| tRNA modification GTPase TrmE [Escherichia coli E1520]
 gi|331036725|gb|EGI08951.1| tRNA modification GTPase TrmE [Escherichia coli H736]
 gi|331067643|gb|EGI39045.1| tRNA modification GTPase TrmE [Escherichia coli TA280]
 gi|331077802|gb|EGI49014.1| tRNA modification GTPase TrmE [Escherichia coli H299]
 gi|332089435|gb|EGI94539.1| tRNA modification GTPase TrmE [Shigella boydii 3594-74]
 gi|332104856|gb|EGJ08202.1| tRNA modification GTPase TrmE [Shigella sp. D9]
 gi|332345697|gb|AEE59031.1| tRNA modification GTPase TrmE [Escherichia coli UMNK88]
          Length = 454

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|307133252|ref|YP_003885268.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Dickeya
           dadantii 3937]
 gi|306530781|gb|ADN00712.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Dickeya
           dadantii 3937]
          Length = 454

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 168/467 (35%), Positives = 264/467 (56%), Gaps = 40/467 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG +   V + +  K  P PR A    F   DG +
Sbjct: 1   MSH-TDTIVAQATPPGRGGVGILRISGRTAAAVAQAVLGKL-PKPRYADYLPFHDADGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P++R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPDVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRIHQLVEALTHLRIYVEAAIDFPD 178

Query: 181 EED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           EE   + +   + +LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NA
Sbjct: 179 EEIDFLSDGKIEAMLNDVI---GDLGAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNA 235

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA +D AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E 
Sbjct: 236 LAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQ 295

Query: 299 ADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL---------YSTYTEE 338
           AD +L + +  +   +             PK +    +  K+D+          +TY+  
Sbjct: 296 ADRVLFMVDGTTTDAMEPAAIWPEFMARLPKTLPITVVRNKADVTGEPLGIEDVNTYS-- 353

Query: 339 YDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
              LI  S+ TG+G++ L + +K  +            + +RHL  L Q  ++L+    +
Sbjct: 354 ---LIRLSARTGDGVDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALEQAAQHLQQG--H 407

Query: 397 EKDCGL---DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+  G    +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 408 EQLVGAYAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|224585642|ref|YP_002639441.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|254811494|sp|C0Q2L4|MNME_SALPC RecName: Full=tRNA modification GTPase mnmE
 gi|224470170|gb|ACN48000.1| tRNA modification GTPase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 454

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFDI-NMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|215489046|ref|YP_002331477.1| tRNA modification GTPase TrmE [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967884|ref|ZP_07782096.1| tRNA modification GTPase TrmE [Escherichia coli 2362-75]
 gi|254811475|sp|B7UMH3|MNME_ECO27 RecName: Full=tRNA modification GTPase mnmE
 gi|215267118|emb|CAS11565.1| GTPase [Escherichia coli O127:H6 str. E2348/69]
 gi|312287445|gb|EFR15353.1| tRNA modification GTPase TrmE [Escherichia coli 2362-75]
          Length = 454

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSELNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|52843194|ref|YP_096993.1| tRNA modification GTPase TrmE [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81823314|sp|Q5ZR82|MNME_LEGPH RecName: Full=tRNA modification GTPase mnmE
 gi|52630305|gb|AAU29046.1| GTP binding protein in thiophene and furan oxidation (GTPase)
           [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 446

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 166/450 (36%), Positives = 262/450 (58%), Gaps = 22/450 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + I+R+SGP+ + +   +   K   PR A+    +  +  +LD+GL
Sbjct: 4   DTIVAIATPPGRGGVGIVRISGPNAYAIALCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED  E   HG   V++ +++E +     RLA PGEFS RAF N KIDL
Sbjct: 64  VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKE-SIAAGARLARPGEFSERAFLNDKIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED-- 183
           ++AE++ADLI + ++   R++++ + G+ S    Q  ++L ++R ++EA +DF EEE   
Sbjct: 123 IQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEEIDF 182

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           + + +  ++L  I+    DI S  +QG L   +R G  +VI G  NAGKS+L N LA +D
Sbjct: 183 LNDGNVSQLLQKIIGRLEDIRSQANQGVL---LREGLSLVIAGRPNAGKSTLINNLAGRD 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIVT+I GTTRD++   + L+   + I DTAG+R++DD+VEKEGIKR + E++ AD +L
Sbjct: 240 VAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVL 299

Query: 304 LLKEINSKKE---------ISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLE 352
           L+ +IN+  +         ++ P  I  I +  K D    +   +E+   +S+ TGEGL+
Sbjct: 300 LVVDINNPDQQNSLLNELRLTLPNKIPIITVYNKIDTTKLTAKCDEHTVYLSAKTGEGLD 359

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLR 410
           EL   IK ++   ++       + +RHL  L +    L    + L     G +++AE+LR
Sbjct: 360 ELKKVIKQVVG--YQPTEGQFLARRRHLQALDEAKALLLTGQSQLTNHKAG-ELLAEDLR 416

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 LAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446


>gi|56698706|ref|YP_169083.1| tRNA modification GTPase TrmE [Ruegeria pomeroyi DSS-3]
 gi|81819880|sp|Q5LLM7|MNME_SILPO RecName: Full=tRNA modification GTPase mnmE
 gi|56680443|gb|AAV97109.1| tRNA modification GTPase TrmE [Ruegeria pomeroyi DSS-3]
          Length = 428

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 161/437 (36%), Positives = 244/437 (55%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T    + +++IRLSGP  +     +     P  R  S+R      G  LD G+
Sbjct: 2   DTIFALATAQGKAGVAVIRLSGPRAYHTACLLAGPDLP-SRGLSVRQLKDSQGARLDDGV 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +P SFTGED AEF +HG +A    +L  L  +  LRLA PGEF+RRA ENGK+ L
Sbjct: 61  VLTFAAPASFTGEDVAEFQIHGSLATTEAVLRCLGDLDGLRLAEPGEFTRRALENGKMSL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ +   ++G L  L   W  KL    + +EA +DF++EE V 
Sbjct: 121 PQVEGLADLIDAETEAQRKQAQAVLNGALGQLAEGWRAKLIRAAALLEAVIDFADEE-VP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV   +  ++ D+   I+  ++ E IR G+++ I+G  NAGKS+L N LA ++ A
Sbjct: 180 TDVSPEVRALLAEVRADLEHEIAGVRIAERIRTGFEVAIIGPPNAGKSTLLNMLAGREAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           + +++ GTTRDV+ + +DL G  V + DTAG+RET D+VE  GI       + ADL + L
Sbjct: 240 LTSEVAGTTRDVIEVRMDLGGLPVTLLDTAGLRETGDLVEGMGIALARRRADQADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E      +      D + +  K+D       +  + IS  TG+G+++L+ +I  +L  K
Sbjct: 300 TEDVDAMGVEL--QPDDLHVLPKAD----QRPDTANAISGVTGQGVDQLVQRISDVL--K 351

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCGL-DIIAENLRLASVSLGKITGCV 423
            +     I + +RH   +   +  L+   ++ E    L DI AE LR A  +L  + G +
Sbjct: 352 TRSSSAGIATRERHRVAMKTALDALDRTGTVLESGPDLYDIAAEELRTAIRALESLVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
            VE LLD IF+ FC+GK
Sbjct: 412 GVETLLDEIFASFCLGK 428


>gi|301160376|emb|CBW19901.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
          Length = 458

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 5   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 63  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 123 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 183 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 242 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 301

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 302 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 361

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE   A L     G
Sbjct: 362 SARTGEGIDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 458


>gi|82779236|ref|YP_405585.1| tRNA modification GTPase TrmE [Shigella dysenteriae Sd197]
 gi|293417178|ref|ZP_06659805.1| tRNA modification GTPase TrmE [Escherichia coli B185]
 gi|309784244|ref|ZP_07678883.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1617]
 gi|123561062|sp|Q329B1|MNME_SHIDS RecName: Full=tRNA modification GTPase mnmE
 gi|81243384|gb|ABB64094.1| GTP-binding protein [Shigella dysenteriae Sd197]
 gi|291431209|gb|EFF04202.1| tRNA modification GTPase TrmE [Escherichia coli B185]
 gi|308927751|gb|EFP73219.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1617]
          Length = 454

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGISEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|295095342|emb|CBK84432.1| tRNA modification GTPase trmE [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 454

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 255/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTP 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  + ND+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNQVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LI 343
            +L + +  +   +             P  +    +  K+D+        D   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG+E L + +K  +      +     + +RHL  L +  R+LE   A L     G
Sbjct: 358 SARTGEGVEALRSHLKQSMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|205422290|sp|A9MJT6|MNME_SALAR RecName: Full=tRNA modification GTPase mnmE
          Length = 454

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 166/459 (36%), Positives = 258/459 (56%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG +  +V + +  K  P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLNAKKVAQTVLGKL-PKPRYADYLPFKDADGAT 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPGDIWPDFIARLPKNLPITVVRNKADITGEMLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|323975226|gb|EGB70330.1| tRNA modification GTPase TrmE [Escherichia coli TW10509]
          Length = 454

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 165/458 (36%), Positives = 254/458 (55%), Gaps = 27/458 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   +        
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKVQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|224827182|ref|ZP_03700277.1| tRNA modification GTPase TrmE [Lutiella nitroferrum 2002]
 gi|224600575|gb|EEG06763.1| tRNA modification GTPase TrmE [Lutiella nitroferrum 2002]
          Length = 450

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 164/455 (36%), Positives = 256/455 (56%), Gaps = 22/455 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           + +   TI A++T      + +IR+SG       + I   K P PR A+   F   DG  
Sbjct: 3   LAYTPTTICAIATAPGRGGVGVIRVSGRGLLPFAQAISGGKTPQPRYATYSDFVAADGTA 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GL++ FP P SFTGED  E   HGG  V+N +L    ++   RLA PGEF++RAF N
Sbjct: 63  IDNGLMLYFPGPNSFTGEDVLELQGHGGPVVLNMLLSRCLEL-GARLAEPGEFTKRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + +E   + +++ + G  S    Q +D+L  +R  +EA LDF +
Sbjct: 122 DKLDLAQAESVADLIDASSETAAKSALKSLKGAFSHEIHQLVDELITLRMLVEATLDFPD 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +    + +    +  ++  +S   +  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 182 EE-IDFLEAADARGKLGGVRARLSQVQATARQGAILREGMHVVLVGQPNVGKSSLLNALA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             DVAIVTDI GTTRD L  ++ ++G  V + DTAG+R+TDD+VEK GI+RT+  V+ AD
Sbjct: 241 GDDVAIVTDIAGTTRDTLREEIVIDGVPVHVIDTAGLRDTDDVVEKIGIERTWQAVQRAD 300

Query: 301 LILLLKEINSKKEIS---------FPKNIDFIFIGTKSDL---YSTYTEEYDHLI---SS 345
           L+L+L  ++S++ +           P+ +  +F+  K DL        EE  H +   S+
Sbjct: 301 LVLVL--VDSREGVGAEVSAILAKLPERLPRVFVFNKVDLSGEAPGLAEEDGHPVVRLSA 358

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
            T  G+E L  K+  ++  +       + + +RHL  + +   +L +A    +   +++ 
Sbjct: 359 RTLAGVELLRAKLLEMIGYRGASEGVFL-ARERHLDAIRRAAEHLALAETVWQQ--VELF 415

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRLA  +L ++TG    + LL +IFS+FCIGK
Sbjct: 416 AEELRLAQHALSEVTGEFTPDDLLGVIFSRFCIGK 450


>gi|15833895|ref|NP_312668.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. Sakai]
 gi|168748574|ref|ZP_02773596.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753599|ref|ZP_02778606.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4401]
 gi|168759896|ref|ZP_02784903.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766197|ref|ZP_02791204.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4486]
 gi|168772255|ref|ZP_02797262.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779932|ref|ZP_02804939.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786540|ref|ZP_02811547.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC869]
 gi|168798745|ref|ZP_02823752.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC508]
 gi|195936329|ref|ZP_03081711.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808040|ref|ZP_03250377.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814185|ref|ZP_03255514.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820072|ref|ZP_03260392.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395938|ref|YP_002273234.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4115]
 gi|217324903|ref|ZP_03440987.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795709|ref|YP_003080546.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225860|ref|ZP_05940141.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261258905|ref|ZP_05951438.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia
           coli O157:H7 str. FRIK966]
 gi|291285125|ref|YP_003501943.1| tRNA modification GTPase trmE [Escherichia coli O55:H7 str. CB9615]
 gi|21363001|sp|Q8XB41|MNME_ECO57 RecName: Full=tRNA modification GTPase mnmE
 gi|254811478|sp|B5YXB0|MNME_ECO5E RecName: Full=tRNA modification GTPase mnmE
 gi|13364116|dbj|BAB38064.1| GTP-binding protein in thiophene and furan oxidation [Escherichia
           coli O157:H7 str. Sakai]
 gi|187771576|gb|EDU35420.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016998|gb|EDU55120.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4113]
 gi|189002302|gb|EDU71288.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359120|gb|EDU77539.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364418|gb|EDU82837.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369584|gb|EDU88000.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373460|gb|EDU91876.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC869]
 gi|189378836|gb|EDU97252.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC508]
 gi|208727841|gb|EDZ77442.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735462|gb|EDZ84149.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740195|gb|EDZ87877.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157338|gb|ACI34771.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4115]
 gi|209754068|gb|ACI75341.1| hypothetical protein ECs4641 [Escherichia coli]
 gi|209754070|gb|ACI75342.1| hypothetical protein ECs4641 [Escherichia coli]
 gi|209754072|gb|ACI75343.1| hypothetical protein ECs4641 [Escherichia coli]
 gi|209754074|gb|ACI75344.1| hypothetical protein ECs4641 [Escherichia coli]
 gi|209754076|gb|ACI75345.1| hypothetical protein ECs4641 [Escherichia coli]
 gi|217321124|gb|EEC29548.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           TW14588]
 gi|254595109|gb|ACT74470.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia
           coli O157:H7 str. TW14359]
 gi|290764998|gb|ADD58959.1| tRNA modification GTPase trmE [Escherichia coli O55:H7 str. CB9615]
 gi|320191194|gb|EFW65844.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
           O157:H7 str. EC1212]
 gi|320639432|gb|EFX09047.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. G5101]
 gi|320644875|gb|EFX13911.1| tRNA modification GTPase TrmE [Escherichia coli O157:H- str.
           493-89]
 gi|320650139|gb|EFX18635.1| tRNA modification GTPase TrmE [Escherichia coli O157:H- str. H
           2687]
 gi|320655487|gb|EFX23422.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661113|gb|EFX28549.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666239|gb|EFX33245.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326337245|gb|EGD61080.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
           O157:H7 str. 1044]
 gi|326341616|gb|EGD65405.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
           O157:H7 str. 1125]
          Length = 454

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SAKTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|327395913|dbj|BAK13335.1| tRNA modification GTPase TrmE [Pantoea ananatis AJ13355]
          Length = 454

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 252/459 (54%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SGP   +V + I  K  P PR A    F   DG +
Sbjct: 1   MSH-SDTIVAQATSPGRGGVGILRISGPRAAEVAQQILGKL-PKPRYADYLSFNDSDGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRIVALPGLRIAQPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S      ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRINHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  + +D+ +  ++ K G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEGQLNTVISDLDAVRAEAKQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 297

Query: 301 LILLL-----------KEINSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L +            EI        P  +    +  K+D+       T    H    +
Sbjct: 298 RVLFMVDGTTTDATEPAEIWPDFVARLPPQLPITVVRNKADITGEARGLTNANGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ T EGL+ L + +K  +      +     + +RHL  L     +LE   + L     G
Sbjct: 358 SARTSEGLDTLRDHLKQTMGFA-DNMEGGFLARRRHLQALELAATHLEQGKSQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|15804300|ref|NP_290339.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 EDL933]
 gi|12518545|gb|AAG58903.1|AE005601_9 GTP-binding protein in thiophene and furan oxidation [Escherichia
           coli O157:H7 str. EDL933]
          Length = 454

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGEB  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEBVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SAKTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|319779149|ref|YP_004130062.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Taylorella
           equigenitalis MCE9]
 gi|317109173|gb|ADU91919.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Taylorella
           equigenitalis MCE9]
          Length = 443

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 169/449 (37%), Positives = 259/449 (57%), Gaps = 18/449 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           HE +TI A++T      I ++R+SG         +     P PR A+   FF  DG  +D
Sbjct: 2   HE-DTIAAIATAPGRGGIGVVRVSGQELAGFARALTNGLDPKPRIATYTDFFDDDGAAID 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            GLL+ FP+P SFTGED  E   HGG  ++N +L+   ++   RLA PGEF++RAF N K
Sbjct: 61  NGLLLYFPAPHSFTGEDVLELQGHGGPVILNMVLKRCIEL-GARLAEPGEFTKRAFLNNK 119

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AES+ADLI + +E   R+++  + G  S    + + KL ++R  +EA LDF EEE
Sbjct: 120 IDLTQAESVADLIDATSEKAARMALRSLKGVFSDRIHELVSKLINLRMLVEATLDFPEEE 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +    + + L  +  ++  +   ISQ   G I+R G K+ ++G  N GKSSL NAL+ +
Sbjct: 180 -LDFLEAADALGQLNEIRKLLEGIISQANQGTIMREGLKVALIGMPNVGKSSLLNALSGE 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +VAIVTDI GTTRDV+   + ++G  +   DTAG+RET+D+VE+ GIK++   +++AD+ 
Sbjct: 239 EVAIVTDIAGTTRDVVKNFIHIDGVPIHFMDTAGLRETEDLVEQIGIKKSEKTLQDADVA 298

Query: 303 LLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYSTYTEEYDHLI--SSFTGEGL 351
           L+L+  + ++EIS          P+++  I+I  K DL      + +++I  S+ TG GL
Sbjct: 299 LILQ--DPREEISHKLQEVLSRIPQSVKTIYIQNKIDLIDKQPAQDNNVIYLSAKTGAGL 356

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           + L   +  +   + +     + +  RH+  LS+    LE+A       GLD+ AE+LRL
Sbjct: 357 DLLKKALLEVAGWEGESEGLFL-ARTRHMNALSEAKSQLEIAK-EIAYSGLDLFAEHLRL 414

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   L  ITG    + LL  IF++FCIGK
Sbjct: 415 AQEHLNTITGEFTADDLLGEIFTRFCIGK 443


>gi|16767128|ref|NP_462743.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|21363010|sp|Q8ZKY3|MNME_SALTY RecName: Full=tRNA modification GTPase mnmE
 gi|16422417|gb|AAL22702.1| GTPase for tRNA modification and thiophene and furan oxidation
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|261248984|emb|CBG26841.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996130|gb|ACY91015.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|312914972|dbj|BAJ38946.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225561|gb|EFX50616.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323132204|gb|ADX19634.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332990693|gb|AEF09676.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 454

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE   A L     G
Sbjct: 358 SARTGEGIDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|62182330|ref|YP_218747.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|168234430|ref|ZP_02659488.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168235485|ref|ZP_02660543.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168260372|ref|ZP_02682345.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194444972|ref|YP_002043092.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194473009|ref|ZP_03078993.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194736496|ref|YP_002116786.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197262577|ref|ZP_03162651.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|207859069|ref|YP_002245720.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|75479674|sp|Q57HZ6|MNME_SALCH RecName: Full=tRNA modification GTPase mnmE
 gi|205422295|sp|A9MX84|MNME_SALPB RecName: Full=tRNA modification GTPase mnmE
 gi|254811491|sp|B5QUQ5|MNME_SALEP RecName: Full=tRNA modification GTPase mnmE
 gi|254811493|sp|B4SYB2|MNME_SALNS RecName: Full=tRNA modification GTPase mnmE
 gi|254811496|sp|B4TN11|MNME_SALSV RecName: Full=tRNA modification GTPase mnmE
 gi|62129963|gb|AAX67666.1| GTPase for tRNA modification and thiophene and furan oxidation
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194403635|gb|ACF63857.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194459373|gb|EDX48212.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194711998|gb|ACF91219.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197240832|gb|EDY23452.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197291436|gb|EDY30788.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|205331633|gb|EDZ18397.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205350463|gb|EDZ37094.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206710872|emb|CAR35236.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|322617245|gb|EFY14150.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619067|gb|EFY15953.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625134|gb|EFY21962.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630185|gb|EFY26956.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634389|gb|EFY31123.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635274|gb|EFY31989.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642902|gb|EFY39486.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322650576|gb|EFY46983.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656398|gb|EFY52690.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661578|gb|EFY57801.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661659|gb|EFY57878.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668227|gb|EFY64385.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672843|gb|EFY68951.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322674975|gb|EFY71061.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683665|gb|EFY79678.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687741|gb|EFY83710.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322716821|gb|EFZ08392.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323192044|gb|EFZ77279.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200526|gb|EFZ85604.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204951|gb|EFZ89936.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206694|gb|EFZ91651.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211767|gb|EFZ96600.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218629|gb|EGA03336.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220030|gb|EGA04500.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224800|gb|EGA09065.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232491|gb|EGA16593.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235266|gb|EGA19351.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323241054|gb|EGA25091.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323241396|gb|EGA25428.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248627|gb|EGA32557.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252074|gb|EGA35934.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258622|gb|EGA42285.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262347|gb|EGA45905.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323268183|gb|EGA51659.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270597|gb|EGA54042.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326625578|gb|EGE31923.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 454

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|296105488|ref|YP_003615634.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059947|gb|ADF64685.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 454

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 169/462 (36%), Positives = 259/462 (56%), Gaps = 30/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDSDGTP 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           EE +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL N
Sbjct: 179 EE-IDFLSDGKIEAQLNDVM---TDLEAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLN 234

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           ALA ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E
Sbjct: 235 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIE 294

Query: 298 NADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH-- 341
            AD +L + +  +   +             P  +    +  K+D+       ++   H  
Sbjct: 295 QADRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSL 354

Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEK 398
             +S+ TGEG+++L N +K  +      +     + +RHL  L +  R+LE   A L   
Sbjct: 355 IRLSARTGEGVDDLRNHLKQSMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGA 413

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             G +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 414 WAG-ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|254510896|ref|ZP_05122963.1| tRNA modification GTPase TrmE [Rhodobacteraceae bacterium KLH11]
 gi|221534607|gb|EEE37595.1| tRNA modification GTPase TrmE [Rhodobacteraceae bacterium KLH11]
          Length = 386

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 161/393 (40%), Positives = 233/393 (59%), Gaps = 11/393 (2%)

Query: 50  LRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109
           +R     DG  LD+GL++ F +P SFTGED AE  +HG  A VN +L  L+ M +LRLA+
Sbjct: 3   VRTLAAPDGSRLDEGLVLTFQAPSSFTGEDVAELQIHGSSASVNAVLRCLSGMDDLRLAD 62

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRA ENGK+DL + E LADLI +ETE QR+ +   ++G L +L   W   L    
Sbjct: 63  PGEFTRRALENGKMDLAQVEGLADLIDAETEAQRKQAQAILAGALGTLAEGWRRDLIRAA 122

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           S +EA +DF++EE V    + EV   I+ +K+D+S   +  ++ E IR G+++ I+G  N
Sbjct: 123 SLLEAVIDFADEE-VPTDVTPEVRALIVSVKDDLSREANGVQIAERIRAGFEVAIVGLPN 181

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
           AGKS+L NALA ++ AI ++  GTTRDV+ + +DL G  V + DTAG+R+T+D VE  GI
Sbjct: 182 AGKSTLLNALAGREAAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRDTEDHVENLGI 241

Query: 290 KRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
           +      E+ADL + L   ++   +      D I +  KSDL     E+    IS  TG 
Sbjct: 242 ELARKRAESADLRVFLT--DTPDVLGIAVQPDDIHVLPKSDLR----EDTADGISGKTGY 295

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAE 407
           G++ LIN I  +LSN+       I + +RH   +++ +  L   +A L       DI AE
Sbjct: 296 GIDRLINNISCVLSNRTTS--HGIATRERHRIAMTKAIESLTAALAVLESGPDMYDIAAE 353

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +R A  +L  + G +DVE LLD IF+ FC+GK
Sbjct: 354 EMRTAIRALESLVGRIDVETLLDEIFASFCLGK 386


>gi|90023653|ref|YP_529480.1| tRNA modification GTPase TrmE [Saccharophagus degradans 2-40]
 gi|123395362|sp|Q21DG1|MNME_SACD2 RecName: Full=tRNA modification GTPase mnmE
 gi|89953253|gb|ABD83268.1| tRNA modification GTPase trmE [Saccharophagus degradans 2-40]
          Length = 456

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 169/460 (36%), Positives = 262/460 (56%), Gaps = 35/460 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T      + IIR+SGP    + + I     P PR A    F   +G ILD+G+
Sbjct: 7   ETIAAIATAPGRGGVGIIRVSGPKALPIAQHILGIT-PKPRYAHYGDFCNANGDILDQGI 65

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  +++ +L+ + +    RLA PGEFS RAF N K+DL
Sbjct: 66  ALYFPNPHSFTGEDVLELQGHGGPVILDMLLDAVVQA-GARLARPGEFSERAFLNDKLDL 124

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + ++   + ++  + GE S+   + +++L H+R ++E+ +DF EEE   
Sbjct: 125 AQAEAIADLIEASSQQAAKQALNSLKGEFSNKIHELVEQLIHLRMYVESAIDFPEEE--I 182

Query: 186 NFSSKEV----LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +F S  +    LND++   +   + ++Q + G ++R+G K+VI G  NAGKSSL NALA+
Sbjct: 183 DFLSDGIVEGKLNDVI---DQTDAVLAQAQQGALLRDGMKVVIAGRPNAGKSSLLNALAE 239

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           KD+AIVT+I GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI+R + E+E+AD 
Sbjct: 240 KDIAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDHVEQIGIERAWGEIESADR 299

Query: 302 ILLLKEINSKKEI-------------SFPKNIDFIFIGTKSDLYSTYTEEYDH-----LI 343
           ILLL +     ++             ++ K +  I+       +ST     D       +
Sbjct: 300 ILLLIDTTDNSQLDVNVHWPEFTSNAAYAKKLTVIYNKIDESGFSTTNHTSDAPYQTLPL 359

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400
           S+ TG GL+ L   +KS++      +  FS  + +RH++ + Q   YL      L     
Sbjct: 360 SAKTGAGLDTLKAHLKSVMGFQSTTEGGFS--ARRRHIHAIEQAQNYLLTGREQLQLHTA 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G +++AE+LR A   L +ITG    + LL  IFS FCIGK
Sbjct: 418 G-ELLAEDLRAAQNHLSEITGAFTPDDLLGKIFSSFCIGK 456


>gi|291615647|ref|YP_003518389.1| TrmE [Pantoea ananatis LMG 20103]
 gi|291150677|gb|ADD75261.1| TrmE [Pantoea ananatis LMG 20103]
          Length = 454

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 252/459 (54%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SGP   +V + I  K  P PR A    F   DG +
Sbjct: 1   MSH-SDTIVAQATPPGRGGVGILRISGPRAAEVAQQILGKL-PKPRYADYLSFNDSDGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRIVALPGLRIAQPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S      ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRINHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  + +D+ +  ++ K G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEGQLNTVISDLDAVRAEAKQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 297

Query: 301 LILLL-----------KEINSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L +            EI        P  +    +  K+D+       T    H    +
Sbjct: 298 RVLFMVDGTTTDATEPAEIWPDFVARLPPQLPITVVRNKADITGEARGLTNANGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ T EGL+ L + +K  +      +     + +RHL  L     +LE   + L     G
Sbjct: 358 SARTSEGLDTLRDHLKQTMGFA-DNMEGGFLARRRHLQALELAATHLEQGKSQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|205422419|sp|Q2WBH0|MNME_MAGMM RecName: Full=tRNA modification GTPase mnmE
          Length = 441

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 166/444 (37%), Positives = 264/444 (59%), Gaps = 14/444 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI+A+++ A  + I++ RLSG         +  K  P PR+A         G +LD GL
Sbjct: 3   ETIYALASAAGRAGIAVWRLSGEGSGTALSALTGKPLPEPRRARRVRLRDGAGEVLDDGL 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP+P SFTGED AE H+HGG AV   +   L ++  LR A PGEFSRRAF NGK+DL
Sbjct: 63  VLWFPAPHSFTGEDVAELHLHGGRAVAAALTARLGEL-GLRPAEPGEFSRRAFLNGKLDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE++ADL+ +ET  QRR ++  + G L+ L   W   L    + +EA +DF++E D+ 
Sbjct: 122 TRAEAIADLVDAETAAQRRQALRQLDGGLAGLVEGWRSALVRAMAHLEAVIDFADE-DIP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +   ++ + ++  L+ ++  H+ + + GE +R+G  I ILG  NAGKSSL N LA ++ A
Sbjct: 181 DTLLEQSVGEVRSLRREMEVHLDERRNGERLRDGIHITILGAPNAGKSSLLNRLAGREAA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+   GTTRDV+ + LDL G+ V ++DTAG+R++   +E EG++R       ADL L +
Sbjct: 241 IVSAQAGTTRDVIEVHLDLGGWPVIVADTAGLRDSACEIESEGVRRAADRAAKADLRLCV 300

Query: 306 --KEINSKKEISFPKNID--FIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEELIN 356
               +    + +  + ID   + +  K DL +  T    +      +S+  GEG+++L+ 
Sbjct: 301 FDGTLYPNLDAATLEMIDDATLVVLNKRDLMTGETPASINGRPVLTLSAKAGEGVDDLVA 360

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           ++  ++ ++F      + + +RH   +++ V  L   S  +   G+++ AE+LRLA+ SL
Sbjct: 361 ELARVVESRFAMGSAPVLTRERHRVAVAEAVAAL---SRFDPGLGIEMAAEDLRLAARSL 417

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G+ITG VDVE++LD+IF +FCIGK
Sbjct: 418 GRITGRVDVEEILDVIFHEFCIGK 441


>gi|161505627|ref|YP_001572739.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866974|gb|ABX23597.1| hypothetical protein SARI_03803 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 472

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 166/459 (36%), Positives = 258/459 (56%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG +  +V + +  K  P PR A    F   DG  
Sbjct: 19  MSH-NDTIVAQATPPGRGGVGILRISGLNAKKVAQTVLGKL-PKPRYADYLPFKDADGAT 76

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 77  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIARPGEFSERAFLN 136

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 137 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 196

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 197 EE-IDFLSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 255

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 256 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAGLRDASDEVERIGIERAWQEIEQAD 315

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 316 RVLFMVDGTTTDAVDPGDIWPDFIARLPKNLPITVVRNKADITGEMLGISEVNGHSLVRL 375

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE   A L     G
Sbjct: 376 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 434

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 435 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 472


>gi|205360204|ref|ZP_02835285.2| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205340459|gb|EDZ27223.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320088264|emb|CBY98026.1| tRNA modification GTPase mnmE [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 467

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F   DG  
Sbjct: 14  MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDADGSA 71

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 72  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 131

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 132 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 191

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 192 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 250

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 251 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 310

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 311 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 370

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE   A L     G
Sbjct: 371 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 429

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 430 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 467


>gi|167548868|ref|ZP_02342627.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205325776|gb|EDZ13615.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 454

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAADHLEQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|322835121|ref|YP_004215148.1| tRNA modification GTPase TrmE [Rahnella sp. Y9602]
 gi|321170322|gb|ADW76021.1| tRNA modification GTPase TrmE [Rahnella sp. Y9602]
          Length = 454

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 168/457 (36%), Positives = 256/457 (56%), Gaps = 29/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +   V + +  K  P PR A    F   DG  LD+G+
Sbjct: 5   DTIIAQATPPGRGGVGILRISGRAARDVAQAVLGKL-PKPRYADYLPFQDADGSTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  + N+R+A PGEFS RAF N K+DL
Sbjct: 64  ALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIIALENVRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSNRIHHLVEALTHLRIFVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEAKLNTVMGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + L+G  + I DTAG+RE  D VE+ GI+R + E+E ADL+L +
Sbjct: 243 IVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADLVLFM 302

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348
                 E     +I        P ++  + +  K+D+       TE   H    +S+ TG
Sbjct: 303 VDGTTTEATEPADIWPEFMARLPASLPIVVVRNKADITGEALGQTEVNGHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-----D 403
           +G++ L + +K ++      +     + +RHL  L Q  ++L    +  KD  L     +
Sbjct: 363 DGVDLLRDHLKQVMGFN-HNMEGGFLARRRHLQALEQAAQHL----VQGKDQLLGAWAGE 417

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 418 LLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|146313778|ref|YP_001178852.1| tRNA modification GTPase TrmE [Enterobacter sp. 638]
 gi|166991109|sp|A4WGH1|MNME_ENT38 RecName: Full=tRNA modification GTPase mnmE
 gi|145320654|gb|ABP62801.1| tRNA modification GTPase trmE [Enterobacter sp. 638]
 gi|190171238|gb|ACE63689.1| ThdF [Enterobacter sp. 638]
          Length = 454

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 254/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFNDADGTA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNTVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LI 343
            +L + +  +   +             P  +    +  K+D+        D   H    +
Sbjct: 298 RVLFMVDGTTTSAVDPADIWPDFIARLPAKLPITVVRNKADMTGETLGLSDVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG+E+L N +K  +  +   +     + +RHL  L     +L+   A L     G
Sbjct: 358 SARTGEGVEDLRNHLKQSMGFE-TNMEGGFLARRRHLQALEAAANHLDQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|193063795|ref|ZP_03044882.1| tRNA modification GTPase TrmE [Escherichia coli E22]
 gi|194428063|ref|ZP_03060607.1| tRNA modification GTPase TrmE [Escherichia coli B171]
 gi|260846509|ref|YP_003224287.1| GTPase TrmE [Escherichia coli O103:H2 str. 12009]
 gi|293464030|ref|ZP_06664444.1| tRNA modification GTPase TrmE [Escherichia coli B088]
 gi|300815046|ref|ZP_07095271.1| tRNA modification GTPase TrmE [Escherichia coli MS 107-1]
 gi|192930510|gb|EDV83117.1| tRNA modification GTPase TrmE [Escherichia coli E22]
 gi|194413821|gb|EDX30099.1| tRNA modification GTPase TrmE [Escherichia coli B171]
 gi|257761656|dbj|BAI33153.1| GTPase TrmE [Escherichia coli O103:H2 str. 12009]
 gi|291321662|gb|EFE61098.1| tRNA modification GTPase TrmE [Escherichia coli B088]
 gi|300531938|gb|EFK53000.1| tRNA modification GTPase TrmE [Escherichia coli MS 107-1]
 gi|323161042|gb|EFZ46961.1| tRNA modification GTPase TrmE [Escherichia coli E128010]
 gi|323182501|gb|EFZ67905.1| tRNA modification GTPase TrmE [Escherichia coli 1357]
 gi|324115941|gb|EGC09867.1| tRNA modification GTPase TrmE [Escherichia coli E1167]
          Length = 454

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 254/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++   + + +   QG L   +R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVIAELDAVRAEARQGSL---LREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|161616963|ref|YP_001590928.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|194447879|ref|YP_002047875.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197250655|ref|YP_002148780.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|198243069|ref|YP_002217792.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200387122|ref|ZP_03213734.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205359076|ref|ZP_02666996.2| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|161366327|gb|ABX70095.1| hypothetical protein SPAB_04784 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406183|gb|ACF66402.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197214358|gb|ACH51755.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197937585|gb|ACH74918.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199604220|gb|EDZ02765.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205338960|gb|EDZ25724.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|322647617|gb|EFY44104.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
          Length = 467

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 14  MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 71

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 72  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 131

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 132 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 191

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 192 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 250

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 251 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 310

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 311 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 370

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE   A L     G
Sbjct: 371 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 429

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 430 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 467


>gi|300983699|ref|ZP_07176709.1| tRNA modification GTPase TrmE [Escherichia coli MS 200-1]
 gi|300306872|gb|EFJ61392.1| tRNA modification GTPase TrmE [Escherichia coli MS 200-1]
 gi|315285497|gb|EFU44942.1| tRNA modification GTPase TrmE [Escherichia coli MS 110-3]
          Length = 475

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 253/456 (55%), Gaps = 23/456 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 24  DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 82

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 83  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 142

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 143 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 201

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++
Sbjct: 202 IDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE 261

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L
Sbjct: 262 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL 321

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---ISSF 346
            + +  +   +             P  +    +  K+D+       +E   H    +S+ 
Sbjct: 322 FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSAR 381

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDI 404
           TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G ++
Sbjct: 382 TGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG-EL 439

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 440 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 475


>gi|26250447|ref|NP_756487.1| tRNA modification GTPase TrmE [Escherichia coli CFT073]
 gi|91213231|ref|YP_543217.1| tRNA modification GTPase TrmE [Escherichia coli UTI89]
 gi|110644049|ref|YP_671779.1| tRNA modification GTPase TrmE [Escherichia coli 536]
 gi|117625981|ref|YP_859304.1| tRNA modification GTPase TrmE [Escherichia coli APEC O1]
 gi|191170442|ref|ZP_03031995.1| tRNA modification GTPase TrmE [Escherichia coli F11]
 gi|218560782|ref|YP_002393695.1| tRNA modification GTPase TrmE [Escherichia coli S88]
 gi|227883929|ref|ZP_04001734.1| tRNA modification GTPase TrmE [Escherichia coli 83972]
 gi|237703508|ref|ZP_04533989.1| tRNA modification GTPase mnmE [Escherichia sp. 3_2_53FAA]
 gi|306815940|ref|ZP_07450078.1| tRNA modification GTPase TrmE [Escherichia coli NC101]
 gi|331660050|ref|ZP_08360988.1| tRNA modification GTPase TrmE [Escherichia coli TA206]
 gi|32171844|sp|Q8FBV3|MNME_ECOL6 RecName: Full=tRNA modification GTPase mnmE
 gi|122421834|sp|Q1R4M8|MNME_ECOUT RecName: Full=tRNA modification GTPase mnmE
 gi|123048671|sp|Q0TB01|MNME_ECOL5 RecName: Full=tRNA modification GTPase mnmE
 gi|166200477|sp|A1AHP0|MNME_ECOK1 RecName: Full=tRNA modification GTPase mnmE
 gi|254811476|sp|B7MGC8|MNME_ECO45 RecName: Full=tRNA modification GTPase mnmE
 gi|26110877|gb|AAN83061.1|AE016769_176 Probable tRNA modification GTPase trmE [Escherichia coli CFT073]
 gi|91074805|gb|ABE09686.1| probable tRNA modification GTPase TrmE [Escherichia coli UTI89]
 gi|110345641|gb|ABG71878.1| probable tRNA modification GTPase TrmE [Escherichia coli 536]
 gi|115515105|gb|ABJ03180.1| tRNA modification GTPase [Escherichia coli APEC O1]
 gi|190909250|gb|EDV68836.1| tRNA modification GTPase TrmE [Escherichia coli F11]
 gi|218367551|emb|CAR05336.1| GTPase [Escherichia coli S88]
 gi|226902772|gb|EEH89031.1| tRNA modification GTPase mnmE [Escherichia sp. 3_2_53FAA]
 gi|227839207|gb|EEJ49673.1| tRNA modification GTPase TrmE [Escherichia coli 83972]
 gi|294489502|gb|ADE88258.1| tRNA modification GTPase TrmE [Escherichia coli IHE3034]
 gi|305850336|gb|EFM50793.1| tRNA modification GTPase TrmE [Escherichia coli NC101]
 gi|307555847|gb|ADN48622.1| tRNA modification GTPase TrmE [Escherichia coli ABU 83972]
 gi|307628783|gb|ADN73087.1| tRNA modification GTPase TrmE [Escherichia coli UM146]
 gi|323949951|gb|EGB45835.1| tRNA modification GTPase TrmE [Escherichia coli H252]
 gi|323954998|gb|EGB50776.1| tRNA modification GTPase TrmE [Escherichia coli H263]
 gi|331053265|gb|EGI25298.1| tRNA modification GTPase TrmE [Escherichia coli TA206]
          Length = 454

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 253/456 (55%), Gaps = 23/456 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++
Sbjct: 181 IDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L
Sbjct: 241 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL 300

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---ISSF 346
            + +  +   +             P  +    +  K+D+       +E   H    +S+ 
Sbjct: 301 FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSAR 360

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDI 404
           TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G ++
Sbjct: 361 TGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG-EL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|300984421|ref|ZP_07176985.1| tRNA modification GTPase TrmE [Escherichia coli MS 45-1]
 gi|300408377|gb|EFJ91915.1| tRNA modification GTPase TrmE [Escherichia coli MS 45-1]
          Length = 479

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 253/456 (55%), Gaps = 23/456 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 28  DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 86

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 87  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 146

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 147 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 205

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++
Sbjct: 206 IDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE 265

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L
Sbjct: 266 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL 325

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---ISSF 346
            + +  +   +             P  +    +  K+D+       +E   H    +S+ 
Sbjct: 326 FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSAR 385

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDI 404
           TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G ++
Sbjct: 386 TGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG-EL 443

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 444 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 479


>gi|226326927|ref|ZP_03802445.1| hypothetical protein PROPEN_00787 [Proteus penneri ATCC 35198]
 gi|225204764|gb|EEG87118.1| hypothetical protein PROPEN_00787 [Proteus penneri ATCC 35198]
          Length = 454

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 172/462 (37%), Positives = 256/462 (55%), Gaps = 33/462 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H  +TI A +T      + I+R+SGP    V + +  K  P PR A    F   D  +LD
Sbjct: 2   HSTDTIVAQATPPGRGGVGILRVSGPKAALVAQTVLGKL-PKPRYADYLPFRNDDNSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP+P SFTGED  E   HGG  +++ +L+ + ++P +R+ANPGEFS RAF N K
Sbjct: 61  QGIALFFPNPNSFTGEDVLELQGHGGPVILDLLLKRILQIPGVRIANPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  SS   + ++ LTH+R ++EA +DF +EE
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAINSLQGAFSSHVNEMVESLTHLRIYVEAAIDFPDEE 180

Query: 183 DVQNFSSKEV----LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
              +F S  +    LN ++   +D+ +   QG L   +R G K+VI G  NAGKSSL NA
Sbjct: 181 --IDFLSDGIIEGKLNAVIAELDDVRAQARQGSL---LREGMKVVIAGRPNAGKSSLLNA 235

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E 
Sbjct: 236 LAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQ 295

Query: 299 ADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTE-----EYDHL 342
           AD +L + +  +    +            P  +    I  KSDL     E      Y  +
Sbjct: 296 ADRVLFMVDSTTTDATTPEDIWPEFMARLPNTLPVTVIRNKSDLTGENAEITAQGNYPMI 355

Query: 343 -ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398
            +S+  G G+E L + +K  +  N   +  F   + +RHL  L+    +L+     L   
Sbjct: 356 RLSARDGMGIELLRDHLKEAMGFNSNTEGGFL--ARRRHLQALNTAAEHLQQGHEQLVYA 413

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             G +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 414 KSG-ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|301047527|ref|ZP_07194602.1| tRNA modification GTPase TrmE [Escherichia coli MS 185-1]
 gi|300300576|gb|EFJ56961.1| tRNA modification GTPase TrmE [Escherichia coli MS 185-1]
 gi|315292850|gb|EFU52202.1| tRNA modification GTPase TrmE [Escherichia coli MS 153-1]
          Length = 477

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 253/456 (55%), Gaps = 23/456 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 26  DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 84

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 85  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 144

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 145 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++
Sbjct: 204 IDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L
Sbjct: 264 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL 323

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---ISSF 346
            + +  +   +             P  +    +  K+D+       +E   H    +S+ 
Sbjct: 324 FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSAR 383

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDI 404
           TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G ++
Sbjct: 384 TGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG-EL 441

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 442 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 477


>gi|325577780|ref|ZP_08148055.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160525|gb|EGC72651.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae ATCC
           33392]
          Length = 452

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 168/455 (36%), Positives = 256/455 (56%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + +  K  P PR A    F   DG +LD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPKALEVAQAVLGKC-PKPRMADYLPFKDADGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQLDGVRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEAKLREIINQLDLVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 L-----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT---EEYDH---LISSFT 347
           +           +++ S+     P N+    +  K DL        EE       +S+ T
Sbjct: 300 MLDSSDPDSQHIEKVRSEFLSKLPNNMPVTIVRNKVDLSGEAVGLKEENGTTTICLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HQGVDLLREHLKQAMGFQ-TGMEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL   +L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQANLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|238913095|ref|ZP_04656932.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 467

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 14  MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 71

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 72  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 131

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 132 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 191

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 192 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 250

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 251 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 310

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 311 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 370

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE   A L     G
Sbjct: 371 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAADHLEQGKAQLLGAWAG 429

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 430 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 467


>gi|301154697|emb|CBW14160.1| GTPase [Haemophilus parainfluenzae T3T1]
          Length = 452

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 170/456 (37%), Positives = 257/456 (56%), Gaps = 25/456 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + +  K  P PR A    F   DG +LD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPRAVEVAQAVLGKC-PKPRMADYLPFKDADGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQLDGVRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEAKLREIINQLDLVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 L-----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT---EEYD----HLISSF 346
           +           +++ S+     P N+    +  K DL        EE      HL S+ 
Sbjct: 300 MLDSSDPDSQNIEKVRSEFLSKLPNNMPVTIVRNKVDLSGEAVGLKEENGTTTIHL-SAQ 358

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDI 404
           T +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G ++
Sbjct: 359 THQGVDLLREHLKQAMGFQ-TGMEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-EL 416

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRL   +L +ITG    + LL  IFS FCIGK
Sbjct: 417 LAEELRLVQANLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|324012741|gb|EGB81960.1| tRNA modification GTPase TrmE [Escherichia coli MS 60-1]
          Length = 481

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 253/456 (55%), Gaps = 23/456 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 30  DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 88

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 89  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 148

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 149 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 207

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++
Sbjct: 208 IDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE 267

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L
Sbjct: 268 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL 327

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---ISSF 346
            + +  +   +             P  +    +  K+D+       +E   H    +S+ 
Sbjct: 328 FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSAR 387

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDI 404
           TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G ++
Sbjct: 388 TGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG-EL 445

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 446 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 481


>gi|194770800|ref|XP_001967476.1| GF20720 [Drosophila ananassae]
 gi|190618486|gb|EDV34010.1| GF20720 [Drosophila ananassae]
          Length = 493

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 167/478 (34%), Positives = 260/478 (54%), Gaps = 52/478 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGLDGR-ILDK 63
           TI+++S+G +   +S+IR+SGP   +    I   K+ +P  R+A L+ FF    + ++D+
Sbjct: 24  TIYSLSSGNVKCGVSVIRVSGPQTKKALRAIVGNKEYEPKARQAYLKSFFHPASKEMIDR 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGEDS EF VHG +AV+  +L+ L K+  LR A PGEF++RAF  GK+
Sbjct: 84  GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L  LY  W  +L    + +EA +DF+EEE 
Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALGRLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  +K +I  H+S  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 204 IEGGVILQLTKELNSVKREIKEHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           VAIVTD  GTTRD++    +  GY V  SDTAG+R+ T D +E+EG++R    +  +D+I
Sbjct: 264 VAIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRKNTTDSIEQEGMQRAKDCLAQSDMI 323

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           LL+ +  + +EI    ++        S    +Y +E D  +    G+ L+ + NK  ++ 
Sbjct: 324 LLMADAKTIREIDHEDSV--------SQFVDSYLQELDIPVDLCNGKRLQLVANKTDTLS 375

Query: 363 SNKFKKLP-----FSIPSHK------------RHLYHLSQTVRYLEMASLN-------EK 398
             + ++L       +I  H+            +HL  L    R       N       E+
Sbjct: 376 PTEIQQLEKLSNVLAISCHQPDKISGFLGHLEKHLQELCGEPRAESPRITNTRYRQQLER 435

Query: 399 DCG----------------LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             G                + I A  LR +   + +ITG V  E +LD++F  FCIGK
Sbjct: 436 CIGHIDVFLRDYRPDRYPDMAIAAAKLRNSVRCIERITGHVSCEDILDVVFKDFCIGK 493


>gi|168464825|ref|ZP_02698717.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195632244|gb|EDX50728.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 454

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 164/458 (35%), Positives = 254/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE            
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKTQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|251791811|ref|YP_003006532.1| tRNA modification GTPase TrmE [Dickeya zeae Ech1591]
 gi|247540432|gb|ACT09053.1| tRNA modification GTPase TrmE [Dickeya zeae Ech1591]
          Length = 454

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 258/462 (55%), Gaps = 30/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + I  K  P PR A    F   DG +
Sbjct: 1   MSH-TDTIVAQATPPGRGGVGILRISGRQASVVAQAILGKL-PKPRYADYLPFHDADGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +A  P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVAAQPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  SS   Q ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSSRVHQLVEALTHLRIYVEAAIDFPD 178

Query: 181 EED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           EE   + +   + +LN+++    D+ +   + + G ++R G K+VI G  NAGKSSL NA
Sbjct: 179 EEIDFLSDGKIEAMLNEVI---GDLEAVRGEARQGSLLREGMKVVIAGRPNAGKSSLLNA 235

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA +D AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E 
Sbjct: 236 LAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAGDEVERIGIERAWQEIEQ 295

Query: 299 ADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY--TEEYDHL--- 342
           AD +L + +  +   +             P  +    +  K+D+       EE +     
Sbjct: 296 ADRVLFMVDGTTTDAVEPAAIWPEFMARLPSRLPITVVRNKADVTGEPLGIEEVNTYSLI 355

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            +S+ TG+G++ L + +K  +            + +RHL  L Q  ++L+    +E+  G
Sbjct: 356 RLSARTGDGVDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALEQAAQHLQQG--HEQLVG 412

Query: 402 L---DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 413 AYAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|226942147|ref|YP_002797221.1| tRNA modification GTPase TrmE [Laribacter hongkongensis HLHK9]
 gi|254811488|sp|C1D6H7|MNME_LARHH RecName: Full=tRNA modification GTPase mnmE
 gi|226717074|gb|ACO76212.1| tRNA modification GTPase trmE [Laribacter hongkongensis HLHK9]
          Length = 450

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 157/438 (35%), Positives = 249/438 (56%), Gaps = 20/438 (4%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + +IRLSG +   +   +   ++P PR A    F   DG+ +D GLL+ FP+P SFTG
Sbjct: 18  GGVGVIRLSGRNLLPLAGQLSGGRQPRPRHALYTDFVASDGQAIDSGLLLYFPAPHSFTG 77

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  ++  +L    ++   RLA PGEF++RAF N K+DL+EAES+ADLI +
Sbjct: 78  EDVLELQGHGGPVILRMLLARCLEL-GARLAEPGEFTKRAFLNDKMDLVEAESVADLIDA 136

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           ++E   R +++ + G  S+   + +D L  +R   EA LDF EE+DV+     + L  + 
Sbjct: 137 QSETAARSALKSLKGAFSAEIHRLVDTLIDLRMLTEATLDFPEEDDVEWLEKADALGRLA 196

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            ++  +++ ++  + G I+R G  +V++G  N GKSSL NALA  ++AIVTDI GTTRD 
Sbjct: 197 AVRRQLATVLATARQGAILREGMHVVLVGQPNVGKSSLMNALAGDEIAIVTDIAGTTRDT 256

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           +   + L+G  + I DTAG+RET D VE+ GI+RT+  VE AD++LLL  ++ +  ++  
Sbjct: 257 VREQIVLDGVPLHIIDTAGLRETTDTVERIGIERTWQAVERADVVLLL--VDGRDGVTAA 314

Query: 316 -------FPKNIDFIFIGTKSDL---YSTYTEEYDHLI---SSFTGEGLEELINKIKSIL 362
                   P+ +  +F+  K DL    +  +EE  H++   S+  G G++ L   +   +
Sbjct: 315 DAAILARLPERLPRVFVHNKIDLTGETAGVSEEDGHVVVRLSARGGAGVDALRQVLLEAV 374

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
             + +     + + +RHL  + +    LE A         ++ AE+LR A   L +ITG 
Sbjct: 375 GWQGESEGLFL-ARERHLDAIRRAEAELEAAG-QAYGLAAELFAEHLRQAQACLSEITGE 432

Query: 423 VDVEQLLDIIFSKFCIGK 440
              + LL +IFS+FCIGK
Sbjct: 433 FSADDLLGVIFSRFCIGK 450


>gi|327482910|gb|AEA86220.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri DSM 4166]
          Length = 455

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 168/461 (36%), Positives = 254/461 (55%), Gaps = 35/461 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI AV+T      + IIR+SGP    +       ++P PR A    F   DG ++D+G
Sbjct: 5   RDTIAAVATAPGRGGVGIIRVSGPRARAIA-ITLSGREPTPRHAHYGPFHADDGEVIDEG 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LL+ FP P SFTGED  E H HGG  V++ +L+   ++  +RLA PGEFS RAF N K+D
Sbjct: 64  LLLFFPGPHSFTGEDVLELHGHGGPVVLDMLLQRCVEL-GVRLARPGEFSERAFLNDKLD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +    R ++  + GE S    Q  ++L  +R ++EA +DF EEE +
Sbjct: 123 LAQAEAIADLIEASSAQAARNAVRSLQGEFSRRVHQLTERLIQLRIYVEAAIDFPEEE-I 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA ++ 
Sbjct: 182 DFLADGHVLAQLDGVRTELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGREA 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + + DTAG+R+T+D VE+ G++R    +  AD ILL
Sbjct: 242 AIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLRDTEDQVERIGVQRALSAIGEADRILL 301

Query: 305 LKEIN----SKKEISFPKNIDF-------IFIGTKSDLYSTYT-------EEYDHLISSF 346
           + + +    S     +P+ +DF         I  K+DL             +    + + 
Sbjct: 302 VVDASAPEASDPSALWPEFLDFSPEPGKVTLIRNKADLTGEAIVLRCDNDGQATLSLCAR 361

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL-------YHLSQTVRYLEMASLNEKD 399
           +GEGLE L   +K  +  + +    S  + +RHL        HL      L +A   E  
Sbjct: 362 SGEGLELLREHLKHCMGYE-QTAESSFSARRRHLDALRLADEHLRHGHDQLTLAGAGE-- 418

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               ++AE+LRLA  +LG+ITG    + LL  IFS FCIGK
Sbjct: 419 ----LLAEDLRLAQQALGEITGAFSSDDLLGRIFSSFCIGK 455


>gi|218662615|ref|ZP_03518545.1| tRNA modification GTPase TrmE [Rhizobium etli IE4771]
          Length = 290

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 136/263 (51%), Positives = 185/263 (70%), Gaps = 7/263 (2%)

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AFENGK+DL+E E LADLI +ETEMQRRL++E  +G +S++Y  W ++LT  R+ IEA+L
Sbjct: 1   AFENGKLDLVEVEGLADLIEAETEMQRRLAVEHSAGGVSAVYDSWAERLTRARALIEAEL 60

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF++E+DV    S  V  D+  L+NDI  H+     GEIIR+G+K+VI G  NAGKSSL 
Sbjct: 61  DFADEDDVPGSVSDMVWADMDRLRNDIWHHLDAASAGEIIRDGFKVVIAGAPNAGKSSLL 120

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA++DVAIVTDI GTTRDVL +DLD++GYLVK+ DTAG+RE DD VE EG++R  + +
Sbjct: 121 NALARRDVAIVTDIAGTTRDVLQVDLDIDGYLVKLYDTAGLREADDRVEMEGVRRARIAL 180

Query: 297 ENADLILLLKEINSKKEISFPKNID----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
            +ADL+LLL +++       P ++D     + +GTK DL  T ++ YD  IS+ TGEGL 
Sbjct: 181 RDADLVLLLVDVSDP---VIPADLDQAVPHVRVGTKKDLIETGSDRYDLRISTATGEGLP 237

Query: 353 ELINKIKSILSNKFKKLPFSIPS 375
           EL   I  ++  +F  L  +IPS
Sbjct: 238 ELRALIGRVVKERFAGLSMAIPS 260


>gi|288942813|ref|YP_003445053.1| tRNA modification GTPase TrmE [Allochromatium vinosum DSM 180]
 gi|288898185|gb|ADC64021.1| tRNA modification GTPase TrmE [Allochromatium vinosum DSM 180]
          Length = 447

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 173/452 (38%), Positives = 245/452 (54%), Gaps = 17/452 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    ETI A++T      + I+R+SGP    + E I  +  P PR+A+   F   DG  
Sbjct: 1   MTTTGETIAAIATPPGMGGVGIVRISGPRTRSIAEGILGRV-PEPRRAAFGTFREADGTF 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GL + F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEFS RAF N
Sbjct: 60  IDEGLALYFQAPRSFTGEDVLELQGHGGPIVMDLLLRRCLEL-GARLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL++AE++ADLI S T +  RL+   + G  S      +++L  +R  +EA LDF +
Sbjct: 119 GKLDLVQAEAVADLIESSTALAVRLAGRSLQGVFSQRINTLVERLIQVRLHVEATLDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +       V  D+  +   +   ++    G+IIR G  +VI G  N GKSSL NAL 
Sbjct: 179 EE-IDLADEPTVAIDLAAILEAVDRLLADAHQGQIIREGLAVVIAGAPNVGKSSLLNALC 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTDIPGTTRD+L  D+ ++G  ++I DTAG+R T D VE+EG++R    +  AD
Sbjct: 238 GSDAAIVTDIPGTTRDLLKFDIQVDGLPIRIVDTAGLRHTHDPVEQEGVRRAQTALSEAD 297

Query: 301 LILLLKEINSKKEIS----FPKNIDFIFIGTKSDLYSTYT------EEYDHLISSFTGEG 350
           L+L +   N + + S    FP       I  K DL            E +  +S  +GEG
Sbjct: 298 LVLWVYAANGEPDESIRSTFPAGCPITRIRNKIDLPGEAAGLVERDGEVEIALSVASGEG 357

Query: 351 LEELINKIKSILSNKFKKLP-FSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAEN 408
           L+ L   +KS         P  +  + +RHL  L +    L  A+ N E+  G +++AE 
Sbjct: 358 LDLLKAHLKS--RAGLSAHPEGAFIARRRHLDALERARGALRAAATNLERRLGAELVAEE 415

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L LA  +LG+ITG    + LL  IFS FCIGK
Sbjct: 416 LHLAQRALGEITGEFTSDDLLGRIFSSFCIGK 447


>gi|283836140|ref|ZP_06355881.1| hypothetical protein CIT292_10562 [Citrobacter youngae ATCC 29220]
 gi|291068330|gb|EFE06439.1| tRNA modification GTPase TrmE [Citrobacter youngae ATCC 29220]
          Length = 454

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 171/460 (37%), Positives = 260/460 (56%), Gaps = 26/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSS 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNSVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEISFPKNI--DFI----------FIGTKSDLYST---YTEEYDH---L 342
            +L + +  +   +  P NI  DFI           +  K+D+       +E   H    
Sbjct: 298 RVLFMVDGTTTDAVD-PANIWPDFIARLPAKLPITVVRNKADITGETLGLSEVNGHSLVR 356

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDC 400
           +S+ TGEG++ L N +K  +  +   +     + +RHL  L++   +LE   A L     
Sbjct: 357 LSARTGEGVDVLRNHLKQSMGFE-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWA 415

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 416 G-ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|237729028|ref|ZP_04559509.1| tRNA modification GTPase TrmE [Citrobacter sp. 30_2]
 gi|226909650|gb|EEH95568.1| tRNA modification GTPase TrmE [Citrobacter sp. 30_2]
          Length = 454

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 166/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  + +D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNSVISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LI 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADITGETLGLSEVNSHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +  +   +     + +RHL  L++   +LE   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFE-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|54299006|ref|YP_125375.1| tRNA modification GTPase TrmE [Legionella pneumophila str. Paris]
 gi|81822476|sp|Q5X0M3|MNME_LEGPA RecName: Full=tRNA modification GTPase mnmE
 gi|53752791|emb|CAH14226.1| hypothetical protein lpp3073 [Legionella pneumophila str. Paris]
          Length = 446

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 165/450 (36%), Positives = 262/450 (58%), Gaps = 22/450 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + I+R+SGP  + +   +   K   PR A+    +  +  +LD+GL
Sbjct: 4   DTIVAIATPPGRGGVGIVRISGPKAYAIALCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED  E   HG   V++ +++E +     RLA PGEFS RAF N KIDL
Sbjct: 64  VLYFKGPHSFTGEDIIEIQAHGSPVVLDLLIKE-SIAAGARLARPGEFSERAFLNDKIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED-- 183
           ++AE++ADLI + ++   R++++ + G+ S    Q  ++L ++R ++EA +DF EEE   
Sbjct: 123 IQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEEIDF 182

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           + + +  ++L  I+    +I S  +QG L   +R G  +VI G  NAGKS+L N LA +D
Sbjct: 183 LNDGNVSQLLQRIIGRLEEIRSQANQGVL---LREGLSLVIAGRPNAGKSTLINNLAGRD 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIVT+I GTTRD++   + L+   + I DTAG+R++DD+VEKEGIKR + E++ AD +L
Sbjct: 240 VAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVL 299

Query: 304 LLKEINSKKE---------ISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLE 352
           L+ +IN++ +         ++ P  I  I +  K D    +   +E+   +S+ TGEGL+
Sbjct: 300 LVVDINNRDQQNSLLNELRLTLPNKIPIITVYNKIDTTKLTAKCDEHTVYLSAKTGEGLD 359

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLR 410
           EL   IK ++   ++       + +RHL  L +    L    + L     G +++AE+LR
Sbjct: 360 ELKKVIKQVVG--YQPTEGQFLARRRHLQALDEAKALLLTGQSQLTNHKAG-ELLAEDLR 416

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 LAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446


>gi|320170767|gb|EFW47666.1| tRNA modification GTPase TrmE [Capsaspora owczarzaki ATCC 30864]
          Length = 585

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 153/457 (33%), Positives = 265/457 (57%), Gaps = 22/457 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASL-RYFFGLDGR 59
            ++++I+A++T    + ++++RLSG +     E +    +K   PR+A L R        
Sbjct: 132 QQRDSIYALATAPGRAGVAVVRLSGRAAGIAIERMTGSAQKSKTPRQAHLCRLVHPTTKE 191

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D  +++ FP P SFTGED AEFH+HGG +++  + E L+++P+ R+A+ GEF++RAF 
Sbjct: 192 HIDDAIVLWFPGPRSFTGEDVAEFHIHGGRSIIEALFEALSELPDTRMADAGEFTKRAFF 251

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGKIDL E E LADLI++ET  QR+ ++  ++G +S  + +W   +    + +E ++DF+
Sbjct: 252 NGKIDLTEVEGLADLINAETRAQRQQALRQLNGAMSRTFEEWRRTILKSMAHVEGNIDFA 311

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED++    +  ++ +  L+++I++ ++  + GE +R+G  + I+G  N GKSSL N +
Sbjct: 312 ETEDIEENVMQSAISAVQTLRHEIAASLNDSRRGERLRSGVSVAIVGAPNVGKSSLLNIM 371

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           +++  AIV+   GTTRD+L + LD+ GY + + DTAG+R++D+ +E+EGIKR        
Sbjct: 372 SQRPTAIVSATAGTTRDILEVPLDIGGYPLLLCDTAGMRDSDEEIEQEGIKRARARAHAC 431

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------------SS 345
           DL L + +  SK +   P  +  +  G    + +   T E   L+             S 
Sbjct: 432 DLRLCVFD-ASKLDSVDPSILQLVQPGMSLPIINKIDTVEASQLVIPPEILAAKPVFLSC 490

Query: 346 FTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
            +GEG+  L+ ++   L  + +      ++ +  RH   L   V +L+    +  D  + 
Sbjct: 491 KSGEGVSVLLERLTLELKQRCESETGETALITQWRHRTQLQTCVAHLDHFLEDLSD--VA 548

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I AE+LR A  +LG+ITG VD+E++LD+IF  FCIGK
Sbjct: 549 IAAEHLRQAVRALGQITGRVDIEEILDVIFRDFCIGK 585


>gi|58696937|ref|ZP_00372434.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536832|gb|EAL60048.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 414

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 162/410 (39%), Positives = 249/410 (60%), Gaps = 16/410 (3%)

Query: 40  KKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL 99
           KK+  PR A+L   +    +++D G++I FP+P SFTGED  E  VHG  AV+  ILEEL
Sbjct: 12  KKEIKPRFATLVDLYDDSSQLIDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEEL 71

Query: 100 AKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYG 159
           +K+    +A PGEFS RAF NGK DL + E +ADLI +ET+MQ + +++ +SGEL  LY 
Sbjct: 72  SKV--FVMAKPGEFSLRAFLNGKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYS 129

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
            W  +L  I+S IEA +DF E+   +    +++ N++  L   I  H++  + GE +R G
Sbjct: 130 NWRQRLITIQSKIEAYIDFPEDIWAEKSELEKINNEVQSLVRLIQEHLNDNRRGERLREG 189

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             IVI G  N GKS+LFN LAK+D+AIV++  GTTRD+L   +D+ GY + +SDTAGIRE
Sbjct: 190 LHIVITGEPNVGKSTLFNFLAKRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRE 249

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-KNIDFIFIGTKS-DLYSTYTE 337
           + D +E EGI R       ADL + L     +  I+    N D I++ +K+ D+ + +  
Sbjct: 250 SSDPIELEGISRAKKRSFEADLRIELFPFEQRPNINCNVVNSDTIYVLSKADDVINNHDI 309

Query: 338 EYDHL----ISSFTGEGLEELINKIKSILSNKF---KKLPFSIPSHKRHLYHLSQTVRYL 390
           + + +    +S   G G  +LI+ IK     KF   +  P  + + +RH  H+ + + +L
Sbjct: 310 KINGIDLLPVSILKGIGTNKLISLIKEKAEEKFGHDRDTP--VITRQRHRNHMQKALEHL 367

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  ++   D  +++I+E+LRLA+  LG + G +DVE++L  +FS FC+GK
Sbjct: 368 QRFNI---DNPIELISEDLRLAAFELGAVIGIIDVEEILSSVFSNFCVGK 414


>gi|157155417|ref|YP_001465191.1| tRNA modification GTPase TrmE [Escherichia coli E24377A]
 gi|166991107|sp|A7ZTR2|MNME_ECO24 RecName: Full=tRNA modification GTPase mnmE
 gi|157077447|gb|ABV17155.1| tRNA modification GTPase TrmE [Escherichia coli E24377A]
          Length = 454

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 255/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF   K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLYDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG+E L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|288819136|ref|YP_003433484.1| tRNA modification GTPase [Hydrogenobacter thermophilus TK-6]
 gi|288788536|dbj|BAI70283.1| tRNA modification GTPase [Hydrogenobacter thermophilus TK-6]
 gi|308752720|gb|ADO46203.1| tRNA modification GTPase TrmE [Hydrogenobacter thermophilus TK-6]
          Length = 450

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 275/459 (59%), Gaps = 28/459 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKASLRYFFGL--- 56
           M  ++E I A++T    SAI +IR+SG    + V +++  K +  PR A   +FF L   
Sbjct: 1   MVKQREPIIAIATPYGESAIGMIRISGLGVLEKVKKYVRTKGEIKPRYA---HFFALLDE 57

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           DG++LD+G+LI + SP S+TGED  E  +HG   ++   LE   K   +RLA PGEF++R
Sbjct: 58  DGQVLDEGVLIYYKSPASYTGEDMIEMCLHGNPLILKRALELFLK-EGIRLAEPGEFTKR 116

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGK+D+ +AE++ADLI+++T++ R++++  + GELS       +KL  + +++EAD+
Sbjct: 117 AFLNGKLDMTQAEAVADLINAKTDLARKVAIRQLQGELSKYVNSLREKLIQLLAYVEADI 176

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +FSE+ D+   S +E+L  +  ++N I + +S  K GE++R G  + I+G  N GKSSLF
Sbjct: 177 EFSEQ-DIPTISREEILQVLKEVQNSIETLMSTVKAGELLRKGINLAIVGKPNVGKSSLF 235

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  ++ AIVT++PGTTRD L+ +L +EG  + + DTAGIRET+D+VE  G+KR+   +
Sbjct: 236 NALLGRERAIVTEVPGTTRDFLSEELHMEGVPINLIDTAGIRETEDVVESIGVKRSIDSI 295

Query: 297 ENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL---YSTYTEEYDHL-ISSF 346
            +AD++L + + +   E       +  K  D I +  K DL    S      D + +S+ 
Sbjct: 296 NSADMVLFVVDASKPLEKDDWDVYNLVKQRDHIKVLNKVDLGLDPSIAKIFPDGVRVSAK 355

Query: 347 TGEGLEELINKIKSILSNKFKKLPF---SIPSHKRHLYHLSQTVRYLE--MASLNEKDCG 401
            G+G+++L    K ++  K     +    +    RH   L +++  +E  + SL ++D  
Sbjct: 356 MGDGMQDL----KKVMLEKLGVFGYEGMKVYVSARHAQLLKKSLEIIEPLIHSLEKQDIS 411

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +I+A  LR A V L ++ G +  E +L  IFS+FCIGK
Sbjct: 412 PEILALELREALVYLDEMVGAITTEDVLSAIFSRFCIGK 450


>gi|323189559|gb|EFZ74839.1| tRNA modification GTPase TrmE [Escherichia coli RN587/1]
          Length = 454

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 252/456 (55%), Gaps = 23/456 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++
Sbjct: 181 IDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L
Sbjct: 241 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL 300

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---ISSF 346
            + +  +   +             P  +    +  K+D+        E   H    +S+ 
Sbjct: 301 FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMNELNGHALIRLSAR 360

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDI 404
           TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G ++
Sbjct: 361 TGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG-EL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|14195273|sp|Q9CLQ1|MNME_PASMU RecName: Full=tRNA modification GTPase mnmE
          Length = 452

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 172/458 (37%), Positives = 256/458 (55%), Gaps = 29/458 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V   +  K  P PR A    F   DG +LD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPKAVEVAHTVLGKC-PKPRMADYLPFKDSDGNVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  V++ +L+ + ++  LRLA PGEFS +AF N K+D
Sbjct: 61  IALYFKAPHSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-I 179

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LNDI+   + +    S+ K G I+R G K+VI G  NAGKSSL NALA 
Sbjct: 180 DFLADGKIEAHLNDIITQLDHVR---SEAKQGSILREGMKVVIAGRPNAGKSSLLNALAG 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD 
Sbjct: 237 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADR 296

Query: 302 ILL-----------LKEINSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---S 344
           ILL           L+++ S+     P NI    +  K+DL        E+  + +   S
Sbjct: 297 ILLMLDSTEADNQDLEKVRSEFLTKLPSNIPVTIVRNKADLSGENEGIVEQNGYTVITLS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402
           + T +G+  L   +K  +  +   +     + +RHL  L Q   +L+     L +   G 
Sbjct: 357 AKTQQGIALLREHLKQSMGYQ-TNMEGGFLARRRHLEALEQAATHLQQGHVQLTQFYAG- 414

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR     L +ITG    + LL  IFS FCIGK
Sbjct: 415 ELLAEELRRVQNHLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|15603031|ref|NP_246103.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12721514|gb|AAK03250.1| ThdF [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 465

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 172/458 (37%), Positives = 256/458 (55%), Gaps = 29/458 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V   +  K  P PR A    F   DG +LD+G
Sbjct: 15  KETIVAQATAPGRGGIGILRVSGPKAVEVAHTVLGKC-PKPRMADYLPFKDSDGNVLDQG 73

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  V++ +L+ + ++  LRLA PGEFS +AF N K+D
Sbjct: 74  IALYFKAPHSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLD 133

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +
Sbjct: 134 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-I 192

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LNDI+   + +    S+ K G I+R G K+VI G  NAGKSSL NALA 
Sbjct: 193 DFLADGKIEAHLNDIITQLDHVR---SEAKQGSILREGMKVVIAGRPNAGKSSLLNALAG 249

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD 
Sbjct: 250 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADR 309

Query: 302 ILL-----------LKEINSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---S 344
           ILL           L+++ S+     P NI    +  K+DL        E+  + +   S
Sbjct: 310 ILLMLDSTEADNQDLEKVRSEFLTKLPSNIPVTIVRNKADLSGENEGIVEQNGYTVITLS 369

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402
           + T +G+  L   +K  +  +   +     + +RHL  L Q   +L+     L +   G 
Sbjct: 370 AKTQQGIALLREHLKQSMGYQ-TNMEGGFLARRRHLEALEQAATHLQQGHVQLTQFYAG- 427

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR     L +ITG    + LL  IFS FCIGK
Sbjct: 428 ELLAEELRRVQNHLSEITGQFTSDDLLGNIFSSFCIGK 465


>gi|163859322|ref|YP_001633620.1| tRNA modification GTPase TrmE [Bordetella petrii DSM 12804]
 gi|205829119|sp|A9IJ97|MNME_BORPD RecName: Full=tRNA modification GTPase mnmE
 gi|163263050|emb|CAP45353.1| putative tRNA modification GTPase [Bordetella petrii]
          Length = 452

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 169/450 (37%), Positives = 254/450 (56%), Gaps = 23/450 (5%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A++T      I ++R+SGP    +   +  ++   PR A    F    G  LD+G+ +
Sbjct: 9   IAAIATAPGRGGIGVVRISGPDLSALARRLFGREL-TPRHAHYLPFTAETGEHLDEGIAL 67

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRAFENGKID 124
            F +P+S+TGED  E   HGG AV+  ILE   +      +RLA PGEF+RRAF N ++D
Sbjct: 68  YFRAPQSYTGEDVLELQGHGGPAVLRRILERCLQAGADLGVRLAEPGEFTRRAFLNDRMD 127

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED- 183
           L +AE++ADLI + +    R +M  +SGE S+      D++ H+R  +EA LDF EEE  
Sbjct: 128 LAQAEAVADLIDASSVAAARGAMASLSGEFSARVNALSDRIVHLRMLVEATLDFPEEEID 187

Query: 184 -VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            ++ + ++  L     L  D+++ I+Q + G I+R G  +V+ G  N GKSSL NALA  
Sbjct: 188 FLEKYQARPTLQ---ALAADLATLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGD 244

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D+AIVT I GTTRD +  ++ ++G  + I DTAG+R+TDD VE  GI RT+ E+E AD+I
Sbjct: 245 DIAIVTPIAGTTRDKVVQEIHIDGVPLHIVDTAGLRDTDDTVESIGIARTWKEIERADVI 304

Query: 303 LLLK-------EINSKKEISFPKNIDFIFIGTKSDLY-STYTEEYDHL-ISSFTGEGLEE 353
           L L+       E++++     P     + +  K DL    +  +   L IS+  G GL+E
Sbjct: 305 LHLQDATQPADELDAQIVARLPARTPLLTVFNKVDLLDQPFQAQAGQLGISAREGAGLDE 364

Query: 354 LINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLR 410
           L  ++ ++   N   + P+   + +RH++ L +   +LE A+    + D  LD+ AE LR
Sbjct: 365 LRARLLALAGWNPGAESPWL--ARERHVHALQRAAEHLEAATEHAAQDDRVLDLFAEELR 422

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  SL  ITG    + LL  IFS FCIGK
Sbjct: 423 LAHDSLSSITGKFTSDDLLGEIFSSFCIGK 452


>gi|117918464|ref|YP_867656.1| tRNA modification GTPase TrmE [Shewanella sp. ANA-3]
 gi|166991117|sp|A0KR31|MNME_SHESA RecName: Full=tRNA modification GTPase mnmE
 gi|117610796|gb|ABK46250.1| tRNA modification GTPase TrmE [Shewanella sp. ANA-3]
          Length = 453

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 166/453 (36%), Positives = 256/453 (56%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P PR A    F    G+++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDKATDVAMAVLGHL-PKPRYADYCDFKNASGQVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S    + +D++TH+R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  + + +S+  +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIANALYKIIDKLSAVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348
            +  +   +             P N+    +  K+DL       TEE     + IS+ TG
Sbjct: 302 VDGTTTDAVDPHDIWPDFINRLPANLGVTVVRNKADLTGENLAMTEEKGYSVYRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G+EEL   +KS++  K   L     + +RHL  L     +L++     E     +++AE
Sbjct: 362 LGVEELKQHLKSLMGYK-SNLEGGFIARRRHLEALDVAASHLQLGKEQLEIYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|307611884|emb|CBX01600.1| hypothetical protein LPW_32871 [Legionella pneumophila 130b]
          Length = 446

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 165/450 (36%), Positives = 262/450 (58%), Gaps = 22/450 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + I+R+SGP+ + +   +   K   PR A+    +  +  +LD+GL
Sbjct: 4   DTIVAIATPPGRGGVGIVRISGPNAYAIALCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED  E   HG   V++ +++E +     RLA PGEFS RAF N KIDL
Sbjct: 64  VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKE-SIAAGARLARPGEFSERAFLNDKIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED-- 183
           ++AE++ADLI + ++   R++++ + G+ S    Q  ++L ++R ++EA +DF EEE   
Sbjct: 123 IQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEEIDF 182

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           + + +  ++L  I+    +I S  +QG L   +R G  +VI G  NAGKS+L N LA +D
Sbjct: 183 LNDGNVSQLLQRIIGRLEEIRSQANQGVL---LREGLSLVIAGRPNAGKSTLINNLAGRD 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIVT+I GTTRD++   + L+   + I DTAG+R++DD+VEKEGIKR + E++ AD +L
Sbjct: 240 VAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVL 299

Query: 304 LLKEINSKKE---------ISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLE 352
           L+ +IN+  +         ++ P  I  I +  K D    +   +E+   +S+ TGEGL+
Sbjct: 300 LVVDINNPDQQDSLLNELRLTLPNKIPIITVYNKIDTTKLTAKCDEHTVYLSAKTGEGLD 359

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLR 410
           EL   IK ++   ++       + +RHL  L +    L    + L     G +++AE+LR
Sbjct: 360 ELKKVIKQVVG--YQPTEGQFLARRRHLQALDEAKALLLTGQSQLTNHKAG-ELLAEDLR 416

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 LAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446


>gi|193069233|ref|ZP_03050190.1| tRNA modification GTPase TrmE [Escherichia coli E110019]
 gi|260857883|ref|YP_003231774.1| GTPase TrmE [Escherichia coli O26:H11 str. 11368]
 gi|192957557|gb|EDV88003.1| tRNA modification GTPase TrmE [Escherichia coli E110019]
 gi|257756532|dbj|BAI28034.1| GTPase TrmE [Escherichia coli O26:H11 str. 11368]
 gi|323155383|gb|EFZ41566.1| tRNA modification GTPase TrmE [Escherichia coli EPECa14]
          Length = 454

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 255/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF   K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLYDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|308802255|ref|XP_003078441.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri]
 gi|116056893|emb|CAL53182.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri]
          Length = 496

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 165/484 (34%), Positives = 249/484 (51%), Gaps = 50/484 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-------------CKKKKPFPRKASLRY 52
           ETI+AV+T    + +S+ R+SGP+  +                    +      +   R 
Sbjct: 14  ETIYAVATARGRAGVSVTRVSGPNALEALRLARAMETSSPSSTASTSRANDVDGRLRYRA 73

Query: 53  FFGLDGRI----LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLA 108
           F   + R     LD G +  + +P SFTGED  EFH HG +A    +L+ L  +   R A
Sbjct: 74  FVDPNARAGEPPLDVGFVATWRAPRSFTGEDVVEFHGHGSVATQRALLDALGTIDGFRHA 133

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSME-GMSGELSSLYGQWIDKLTH 167
             GEF+RRAF NGK+DL  AE LADL+ +ETE QRR +M    +G   ++Y +W D+L  
Sbjct: 134 EAGEFARRAFLNGKMDLTAAEGLADLLDAETEAQRRQAMRLTANGTQRAMYERWRDELMT 193

Query: 168 IRSFIEADLDFSEEEDVQ-NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
             +  EA +DF EEEDV  +   ++VL     L+  +  H+     GE+IR G ++ I+G
Sbjct: 194 CAAHCEAVIDFGEEEDVSGDVVERDVLTRATALRETLRKHLDAPARGEMIRRGVRVAIVG 253

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N GKSS+ NALA +D AIV+   GTTRDVL I L+L GY V +SDTAGIRETDD VEK
Sbjct: 254 APNVGKSSMLNALAGRDAAIVSPRAGTTRDVLEISLELNGYKVIVSDTAGIRETDDDVEK 313

Query: 287 EGIKRTFLEVENADLILLLKEINSKKEISFPKNI---------DFIFIGTKSDLY-STYT 336
            G+ R      +AD+++ L + +S       ++          D I +  KSD+  +   
Sbjct: 314 MGVARALERARDADVLVALADASSDASSDAARDALSTVDVTGKDVITVWNKSDVIDAARA 373

Query: 337 EEYD-------------HLISSFTGEGLEELINKIKSILSNKFKKLPFS-------IPSH 376
            E D              ++S+  G G+++ I  +  +++ K ++             + 
Sbjct: 374 RELDARVDDITRRGGDARVVSARDGRGVDDFIATLARVVARKCERTSVEGDDDDALAVTR 433

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436
            RH  +L+  V      +       L++ AE+ RLA+ +L ++TG  DVE +LD++F  F
Sbjct: 434 SRHRVNLTSCV-AALERAARRAPVPLELRAEDFRLAARALARVTGSYDVEDVLDVVFRDF 492

Query: 437 CIGK 440
           C+GK
Sbjct: 493 CVGK 496


>gi|148361342|ref|YP_001252549.1| thiophene/furan oxidation GTPase [Legionella pneumophila str.
           Corby]
 gi|296108683|ref|YP_003620384.1| GTP binding protein in thiophene and furan oxidation (GTPase)
           [Legionella pneumophila 2300/99 Alcoy]
 gi|205415773|sp|A5IIK3|MNME_LEGPC RecName: Full=tRNA modification GTPase mnmE
 gi|148283115|gb|ABQ57203.1| GTP binding protein in thiophene and furan oxidation (GTPase)
           [Legionella pneumophila str. Corby]
 gi|295650585|gb|ADG26432.1| GTP binding protein in thiophene and furan oxidation (GTPase)
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 446

 Score =  269 bits (688), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 165/450 (36%), Positives = 262/450 (58%), Gaps = 22/450 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + I+R+SGP+ + +   +   K   PR A+    +  +  +LD+GL
Sbjct: 4   DTIVAIATPPGRGGVGIVRISGPNAYAIALCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED  E   HG   V++ +++E +     RLA PGEFS RAF N KIDL
Sbjct: 64  VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKE-SIAAGARLARPGEFSERAFLNDKIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED-- 183
           ++AE++ADLI + ++   R++++ + G+ S    Q  ++L ++R ++EA +DF EEE   
Sbjct: 123 IQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEEIDF 182

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           + + +  ++L  I+    +I S  +QG L   +R G  +VI G  NAGKS+L N LA +D
Sbjct: 183 LNDGNVSQLLQRIIGRLEEIRSQANQGVL---LREGLSLVIAGRPNAGKSTLINNLAGRD 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIVT+I GTTRD++   + L+   + I DTAG+R++DD+VEKEGIKR + E++ AD +L
Sbjct: 240 VAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVL 299

Query: 304 LLKEINSKKE---------ISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLE 352
           L+ +IN+  +         ++ P  I  I +  K D    +   +E+   +S+ TGEGL+
Sbjct: 300 LVVDINNPDQQNSLLNELRLTLPNKIPIITVYNKIDTTKLTAKCDEHTVYLSAKTGEGLD 359

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLR 410
           EL   IK ++   ++       + +RHL  L +    L    + L     G +++AE+LR
Sbjct: 360 ELKKVIKQVVG--YQPTEGQFLARRRHLQALDEAKALLLTGQSQLTNHKAG-ELLAEDLR 416

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 LAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446


>gi|271502718|ref|YP_003335744.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech586]
 gi|270346273|gb|ACZ79038.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech586]
          Length = 454

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 165/460 (35%), Positives = 255/460 (55%), Gaps = 26/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG +
Sbjct: 1   MSH-TDTIVAQATPPGRGGVGILRISGRQASAVAQAVLGKL-PKPRYADYLPFHDVDGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVVALPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  SS   Q ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSSRVHQLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+     + + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAMLNAVIGDLEGVRGEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY--TEEYDHL----I 343
            +L + +  +   +             P  +    +  K+D+       EE +      +
Sbjct: 298 RVLFMVDGTTTDAVEPAAIWPEFMARLPSRLPITVVRNKADVTGEPLGIEEVNTYSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402
           S+ TG+G++ L + +K  +            + +RHL  L Q  ++L+    +E+  G  
Sbjct: 358 SARTGDGVDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALEQAAQHLQQG--HEQLVGAY 414

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 415 AGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|126730104|ref|ZP_01745916.1| tRNA modification GTPase [Sagittula stellata E-37]
 gi|126709484|gb|EBA08538.1| tRNA modification GTPase [Sagittula stellata E-37]
          Length = 427

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 168/437 (38%), Positives = 252/437 (57%), Gaps = 13/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    S ++++R+SG   ++  + +     P PR+  LR      G  +DK +
Sbjct: 2   DTIFALASAPGRSGVAVVRVSGDRSWEAVKALAGSV-PEPRRMVLRTLRDTSGAHVDKAM 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++VF +  SFTGE+SAEFH+HG IAVV  IL EL+ +   R A PGEF+RRA ENG +D 
Sbjct: 61  VVVFAAGASFTGEESAEFHLHGSIAVVRAILLELSLLEGCRPAQPGEFTRRALENGCMDF 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E+LADLI +ETE QR+ ++  +SG LS    +W  KL    S +E  +DF  +EDV 
Sbjct: 121 TQVEALADLIEAETEGQRKQALAVLSGALSGRVSEWRQKLVRAASLLEVTIDFV-DEDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV+  +  + +DI + +      E +R G+++ I+G  NAGKS+L N LA +D A
Sbjct: 180 VDVAGEVVGLLKDVLSDIQAELRGLDAAERVRMGFEVAIVGPPNAGKSTLLNNLAGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++I GTTRDV+ + +D+ G  V   DTAG+RET+D VE+ GI       E ADL + L
Sbjct: 240 ITSEIAGTTRDVIEVRMDVGGLPVTFLDTAGLRETEDPVERLGIDLARRRAEAADLRVHL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E   + EI   ++ D +    K D  S      D  +S  TG G+  ++++I   L  +
Sbjct: 300 VERGGQPEIGV-RSGDVVRW-AKDDSGS-----LDDGLSGRTGYGVARVLSEIAEELLER 352

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCV 423
              +  S+ S +RH   L ++  +LE A   L      +DI++E++RL    L  + G V
Sbjct: 353 TAGM--SLTSRERHRDSLVRSQMFLERAVSGLESGMSEVDILSEDIRLGIRQLEILVGRV 410

Query: 424 DVEQLLDIIFSKFCIGK 440
           +VE LLD IFS FCIGK
Sbjct: 411 EVEHLLDEIFSSFCIGK 427


>gi|54295838|ref|YP_128253.1| tRNA modification GTPase TrmE [Legionella pneumophila str. Lens]
 gi|81822283|sp|Q5WSF0|MNME_LEGPL RecName: Full=tRNA modification GTPase mnmE
 gi|53755670|emb|CAH17173.1| hypothetical protein lpl2929 [Legionella pneumophila str. Lens]
          Length = 446

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 165/450 (36%), Positives = 262/450 (58%), Gaps = 22/450 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + I+R+SGP+ + +   +   K   PR A+    +  +  +LD+GL
Sbjct: 4   DTIVAIATPPGRGGVGIVRISGPNAYAIALCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED  E   HG   V++ +++E +     RLA PGEFS RAF N KIDL
Sbjct: 64  VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKE-SIAAGARLARPGEFSERAFLNDKIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED-- 183
           ++AE++ADLI + ++   R++++ + G+ S    Q  ++L ++R ++EA +DF EEE   
Sbjct: 123 IQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEEIDF 182

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           + + +  ++L  I+    +I S  +QG L   +R G  +VI G  NAGKS+L N LA +D
Sbjct: 183 LNDGNVSQLLQRIIGRLEEIRSQANQGVL---LREGLSLVIAGRPNAGKSTLINNLAGRD 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIVT+I GTTRD++   + L+   + I DTAG+R++DD+VEKEGIKR + E++ AD +L
Sbjct: 240 VAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVL 299

Query: 304 LLKEINSKKE---------ISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLE 352
           L+ +IN+  +         ++ P  I  I +  K D    +   +E+   +S+ TGEGL+
Sbjct: 300 LVVDINNPDQQNSLHNELKLTLPDKIPIITVYNKIDTTKLTAKCDEHTVYLSAKTGEGLD 359

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLR 410
           EL   IK ++   ++       + +RHL  L +    L    + L     G +++AE+LR
Sbjct: 360 ELKKVIKQVVG--YQPTEGQFLARRRHLQALDEAKALLLTGQSQLTNHKAG-ELLAEDLR 416

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 LAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446


>gi|195035994|ref|XP_001989456.1| GH18796 [Drosophila grimshawi]
 gi|193893652|gb|EDV92518.1| GH18796 [Drosophila grimshawi]
          Length = 495

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 260/470 (55%), Gaps = 37/470 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFF-GLDGRILDK 63
           TI+++S+G +   +S+IR+SGP   Q    I      +P  R+A L+ F+   +  I+D+
Sbjct: 27  TIYSLSSGHIKCGVSVIRVSGPQTKQALRAIVNNVDYEPKQRQAYLKSFYHPANKEIIDR 86

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGED+ EF VHG +AV+  +L+ L ++P LR A PGEF++RAF  GK+
Sbjct: 87  GLLLWFPGPASFTGEDACEFQVHGSLAVIAAMLDALGQLPGLRPAQPGEFTKRAFFGGKL 146

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L+ LY  W  +L    + +EA +DF+EEE 
Sbjct: 147 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRKRLIRCAAHLEAYIDFAEEEQ 206

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  +K +I  H++  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 207 IEGGVLLQLSRELNAVKREIRLHLNDQRQGELLRHGVRTVIIGAPNVGKSSLLNLLCQRA 266

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLI 302
           V+IV +  GTTRD++    +  GY V  +DTAG+R +T D +E EG+ R    +  +DL+
Sbjct: 267 VSIVAEKAGTTRDIIETTHNFGGYPVVFADTAGLRRDTTDTIEVEGMARAKQCLAQSDLV 326

Query: 303 LLLKEINSKKEI-----------SFPKNID----------FIFIGTKSD-LYSTYTEEYD 340
           LLL +  S +++           S+ + +D             +  K+D L +  T+   
Sbjct: 327 LLLADARSLRDVDNNKALAGYIESYLQELDIPAELCHGKRLQLVANKTDTLSAEETQRIG 386

Query: 341 HL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
            L    +S    + L E +  ++ +L  +    P +      H+ +  Q  R +E     
Sbjct: 387 KLNMLALSCHKQDNLAEFLGALEQLL-QQLCGTPQAEHPRITHMRYRQQLERCIEHIDTF 445

Query: 397 EKDCGLD------IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++D   D      I A+ LR +   + +ITG V  E +LD++F  FCIGK
Sbjct: 446 QRDYKPDVYPDMAIAAQQLRKSVRCIERITGHVSCEDILDVVFKDFCIGK 495


>gi|146284521|ref|YP_001174674.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri A1501]
 gi|166234812|sp|A4VS81|MNME_PSEU5 RecName: Full=tRNA modification GTPase mnmE
 gi|145572726|gb|ABP81832.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri A1501]
          Length = 455

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 167/461 (36%), Positives = 253/461 (54%), Gaps = 35/461 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI AV+T      + I+R+SGP    +       ++P PR A    F   DG ++D+G
Sbjct: 5   RDTIAAVATAPGRGGVGIVRVSGPRARAIA-ITLSGREPTPRHAHYGPFHADDGEVIDEG 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LL+ FP P SFTGED  E H HGG  V++ +L+    +  +RLA PGEFS RAF N K+D
Sbjct: 64  LLLFFPGPHSFTGEDVLELHGHGGPVVLDMLLQRCVDL-GVRLARPGEFSERAFLNDKLD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +    R ++  + GE S    Q  ++L  +R ++EA +DF EEE +
Sbjct: 123 LAQAEAIADLIEASSAQAARNAVRSLQGEFSRRVHQLTERLIQLRIYVEAAIDFPEEE-I 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA ++ 
Sbjct: 182 DFLADGHVLAQLDGVRTELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGREA 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + + DTAG+R+T+D VE+ G++R    +  AD ILL
Sbjct: 242 AIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLRDTEDQVERIGVQRALSAIGEADRILL 301

Query: 305 LKEIN----SKKEISFPKNIDF-------IFIGTKSDLYSTYT-------EEYDHLISSF 346
           + + +    S     +P+ +DF         I  K+DL             +    + + 
Sbjct: 302 VVDASAPEASDPSALWPEFLDFSPEPGKVTLIRNKADLTGEAIVLRCDNDGQATLSLCAR 361

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL-------YHLSQTVRYLEMASLNEKD 399
           +GEGLE L   +K  +  + +    S  + +RHL        HL      L +A   E  
Sbjct: 362 SGEGLELLREHLKHCMGYE-QTAESSFSARRRHLDALRLADEHLRHGHDQLTLAGAGE-- 418

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               ++AE+LRLA  +LG+ITG    + LL  IFS FCIGK
Sbjct: 419 ----LLAEDLRLAQQALGEITGAFSSDDLLGRIFSSFCIGK 455


>gi|310765880|gb|ADP10830.1| tRNA modification GTPase trmE [Erwinia sp. Ejp617]
          Length = 467

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 170/461 (36%), Positives = 256/461 (55%), Gaps = 28/461 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH  +TI A +T      + I+R+SG     V + +  K  P PR A    F   DG  
Sbjct: 14  MNH-SDTIVAQATPPGRGGVGILRVSGHKAAGVAQLLLGKL-PKPRYADFLPFRDADGST 71

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+ANPGEFS RAF N
Sbjct: 72  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 131

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 132 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAIDFPD 191

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  + + + +  S+ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 192 EE-IDFLSDGKIEAQLHQVIDSLEAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 250

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 251 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 310

Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHL------- 342
            +L +      +     EI        P+ +    +  K+D+ +  T   + +       
Sbjct: 311 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADI-TGETRGVEKVSTNSLIR 369

Query: 343 ISSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKD 399
           +S+ TGEG+E L + +K  LS  F   +     + +RHL  L     YL+     L    
Sbjct: 370 LSARTGEGIENLRDHLK--LSMGFSGNMEGGFLARRRHLQALELAATYLQQGKHQLLAAR 427

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 428 AG-ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 467


>gi|320539849|ref|ZP_08039508.1| GTP-binding protein with a role in modification of tRNA [Serratia
           symbiotica str. Tucson]
 gi|320030035|gb|EFW12055.1| GTP-binding protein with a role in modification of tRNA [Serratia
           symbiotica str. Tucson]
          Length = 454

 Score =  269 bits (687), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 171/457 (37%), Positives = 251/457 (54%), Gaps = 29/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      I I+R+SG    +V       K P PR A    F  + G  LD+G+
Sbjct: 5   DTIVAQATPPGRGGIGILRISGSKAKEVA-LALLGKLPKPRYADFLPFRDVAGITLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL
Sbjct: 64  ALWFPAPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFINDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M  + G  S+   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSTRIYQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
             S  ++   LN ++   + +     QG L   +R G K+VI G  NAGKSSL NALA +
Sbjct: 183 FLSDGKIEAQLNGVMAALDSVRGEARQGSL---LREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRV 299

Query: 303 LLL-----------KEINSKKEISFPKNIDFIFIGTKSDLYSTY---TEEYDH---LISS 345
           L +            EI  +     P+ +    +  K+D+       TE   H    +S+
Sbjct: 300 LFMVDGTTTVATEPAEIWQEFTARLPQRLPITVVRNKADITGETLGITEVNGHSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403
            TGEG++ L + +K  +      +     + +RHL  L Q  R+L      L     G +
Sbjct: 360 RTGEGIDLLRDHLKQSMGFT-SNMEGGFLARRRHLQALEQAARHLVQGKEQLVSAYAG-E 417

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE LRLA ++L KITG    + LL  IFS FCIGK
Sbjct: 418 LLAEELRLAQLALSKITGEFSSDDLLGRIFSSFCIGK 454


>gi|58616755|ref|YP_195954.1| tRNA modification GTPase TrmE [Ehrlichia ruminantium str. Gardel]
 gi|81311273|sp|Q5FF19|MNME_EHRRG RecName: Full=tRNA modification GTPase mnmE
 gi|58416367|emb|CAI27480.1| tRNA modification GTPase [Ehrlichia ruminantium str. Gardel]
          Length = 439

 Score =  269 bits (687), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 172/451 (38%), Positives = 260/451 (57%), Gaps = 31/451 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+ T    S +++IR+SG    +            PR A+    +     ++D+ ++
Sbjct: 3   TIFALCTPWGKSGVAVIRVSGQDAVKTFMHFKISNAIKPRVATFTPLYNAAHEVIDEVIV 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F +P SFTGED  E H HG IAV+  IL EL K+     A PGEFS RAF N K+DL 
Sbjct: 63  VYFSAPNSFTGEDVVELHTHGSIAVIRMILCELGKI--FIPAGPGEFSLRAFLNNKVDLT 120

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
            AE++ DLI++ETEMQ + ++  MSG L  LY  W  +L  + S +EA +DF EE  V +
Sbjct: 121 RAEAIVDLINAETEMQAKQAIRQMSGSLEKLYQSWRQQLIDVLSNMEAYIDFPEE--VTS 178

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
           F+ + +   +  +K  + +H++ G+ GEI+R G  + ILG  N+GKS+LFN LAK+D+AI
Sbjct: 179 FAVENISFLLDKIKESLENHLNDGRKGEILRQGIYVAILGEPNSGKSTLFNHLAKRDIAI 238

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD--LILL 304
           V++  GTTRDVL   +D+ GY + I DTAGIR+++D VE+EGI+R  L+ E+AD  +I+L
Sbjct: 239 VSEYAGTTRDVLETHIDIAGYPIVIIDTAGIRDSNDPVEQEGIRRAKLKAESADFKIIML 298

Query: 305 LKEINSKKEISFPKNIDF-----IFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLE 352
             E   KK+    + ID      I + +KSD  S  T+   ++       +S     G+E
Sbjct: 299 PYE---KKDALNNEIIDLIDDRSICVLSKSD--SIITQNLININDINFIPVSVCCNLGIE 353

Query: 353 ELINKIKSILSNKFK---KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            L++ I+  +   FK     PF     +R   H+   V  L+  S    +  +++I+E+L
Sbjct: 354 HLLSAIQKKVEADFKFCSTSPFITSDRQR--VHIQNAVNILKNISF---ELPMELISEDL 408

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           RL+   L K+ G +  E++LD +F KFCIGK
Sbjct: 409 RLSVRELEKVVGVISNEEILDNVFGKFCIGK 439


>gi|85714095|ref|ZP_01045084.1| tRNA modification GTPase [Nitrobacter sp. Nb-311A]
 gi|85699221|gb|EAQ37089.1| tRNA modification GTPase [Nitrobacter sp. Nb-311A]
          Length = 456

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 166/460 (36%), Positives = 251/460 (54%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  ++TIFA+S+G  PSAI+++R+SGP        +     P  R A         G  
Sbjct: 1   MHPREQTIFALSSGRPPSAIAVVRVSGPQAGAALRELAGAI-PVARMARRVLLRDRIGEA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ FP+P S TGED AEFH+HGG AV+N +   L+ + N R A PGEF+RRAFEN
Sbjct: 60  IDDAVVLWFPAPASATGEDVAEFHIHGGRAVLNALFAALSSIDNTRAAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL EAE L DLI ++T+ QRR ++  + G L      W  +L    + IEA +DF +
Sbjct: 120 GKIDLTEAEGLDDLIHADTDRQRRQALRQLQGLLGDRARGWRKELIEASALIEAGIDFVD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV     K  +  I  L+ +I   ++     E +R+G  I I G  NAGKS+L N L 
Sbjct: 180 EGDVPEDLLKPAMEKIAQLRREIEQTLAAPAQSERLRDGLMIAITGPPNAGKSTLLNRLV 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIV+   GTTRD++   LDL+GY V + DTAGIRETDD VE+EG++R      +AD
Sbjct: 240 RREAAIVSPHAGTTRDIIEAYLDLDGYPVTLIDTAGIRETDDPVEQEGMRRARDRAASAD 299

Query: 301 LILLLKE-------------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           L+L L +                   + +K ++S P+N D      +    +  +     
Sbjct: 300 LVLWLSDGEMADLDPTIRVGDCSLWLVRNKIDLSGPEN-DEANPRQRETTTARGSRVRRF 358

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
            +S+  G+GL++L+  +     ++       + +  R    L      L  A +L  +  
Sbjct: 359 RVSARRGDGLDDLVAALTVFAGDRLGSSEAGVITRLRQRNILRDAAGSLARAEALAGR-- 416

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G ++IAE LR+A   +G++ G VD++ +LD +F +FCIGK
Sbjct: 417 GDELIAEELRIAIHLMGRLLGRVDIDDILDSLFKEFCIGK 456


>gi|24371603|ref|NP_715645.1| tRNA modification GTPase TrmE [Shewanella oneidensis MR-1]
 gi|24345353|gb|AAN53090.1|AE015452_3 tRNA modification GTPase TrmE [Shewanella oneidensis MR-1]
          Length = 457

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 256/453 (56%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P PR A   YF    G+++D+G+
Sbjct: 8   DTIVAQATAPGRGGVGIIRISGDKATNVAMAVLGHL-PKPRYADYCYFKSASGQVIDQGI 66

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 67  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDL 126

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S    + +D++TH+R ++EA +DF +EE V 
Sbjct: 127 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPDEE-VD 185

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  + + + +  +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 186 FLSDGKIANALYKIIDKLIAVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 245

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L +
Sbjct: 246 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 305

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348
            +  +   +             P N+    I  K+DL       TEE     + IS+ TG
Sbjct: 306 VDGTTTTAVDPHDIWPDFINRLPTNLGVTVIRNKADLTGENLEMTEEKGYSVYRISAKTG 365

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G++EL   +KS++  +   L     + +RHL  L     +L++     E     +++AE
Sbjct: 366 LGVDELKQHLKSLMGYQ-SNLEGGFIARRRHLEALEIAASHLQLGKEQLEVYLAGELLAE 424

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 425 ELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 457


>gi|71909809|ref|YP_287396.1| tRNA modification GTPase TrmE [Dechloromonas aromatica RCB]
 gi|123626188|sp|Q477Q5|MNME_DECAR RecName: Full=tRNA modification GTPase mnmE
 gi|71849430|gb|AAZ48926.1| tRNA modification GTPase trmE [Dechloromonas aromatica RCB]
          Length = 448

 Score =  268 bits (686), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 172/450 (38%), Positives = 250/450 (55%), Gaps = 20/450 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + +IR+SG +      F   +K P PR ASL  F   DG  +D GL
Sbjct: 4   DTIAAIATAPGRGGVGVIRISGSNLLPFA-FALTEKTPKPRYASLADFKAADGSTIDTGL 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+ FP+P+SFTGED  E   HGG  V+  +L     +   RLA PGEFSRRAF NGK+DL
Sbjct: 63  LLYFPNPQSFTGEDVLELQGHGGPVVMQMLLARCLDL-GARLAEPGEFSRRAFLNGKMDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + T    R ++  + GE S   G+  D+L ++R  +EA LDF EE D+ 
Sbjct: 122 AQAEAVADLIDAATASAARSAVRSLQGEFSRAIGELNDELINLRMLVEATLDFPEE-DID 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              +      +  L+  ++    +   G+++++G  +V+ G  N GKSSL N LA  D+A
Sbjct: 181 FLKAANAFGRLERLQLKLAEIFDRAGQGKLLQSGLHVVLAGQPNVGKSSLLNRLAGDDLA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT I GTTRD L   + +EG  + I DTAG+RETDD VEK GI+R++ E+E +D++LLL
Sbjct: 241 IVTPIAGTTRDALRSTIQIEGIPLHIIDTAGLRETDDEVEKIGIERSWKEIERSDVVLLL 300

Query: 306 KEIN-----SKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGLE 352
            +       S +EI    P  +  I +  K DL     E +D        +S+   +G+E
Sbjct: 301 VDARTGVSESDREILARLPDRLQRITVYNKIDLTHRAAERHDEANGTAISLSAKANQGIE 360

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLR 410
            L  ++  I    + +      + +RHL  LS    ++  A   +      L++ AE LR
Sbjct: 361 LLRQELLRIAG--WHQAEDVFIARERHLRALSAAQEHVAAARNVVEGALPALELFAEELR 418

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  SLG+ITG    + LL +IFS+FCIGK
Sbjct: 419 LAQQSLGEITGEFTADDLLGVIFSRFCIGK 448


>gi|259910299|ref|YP_002650655.1| tRNA modification GTPase TrmE [Erwinia pyrifoliae Ep1/96]
 gi|224965921|emb|CAX57454.1| tRNA modification GTPase [Erwinia pyrifoliae Ep1/96]
          Length = 454

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 169/460 (36%), Positives = 254/460 (55%), Gaps = 26/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH  +TI A +T      + I+R+SG     V + +  K  P PR A    F   DG  
Sbjct: 1   MNH-SDTIVAQATPPGRGGVGILRVSGHKAAGVAQLLLGKL-PKPRYADYLPFRDADGST 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+ANPGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   + ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNRLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  + + + +  S+ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLHQVIDSLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 297

Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYS------TYTEEYDHLI 343
            +L +      +     EI        P+ +    +  K+D+          +      +
Sbjct: 298 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIKGVEKVSAHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400
           S+ TGEG+E L + +K  LS  F   +     + +RHL  L     YL+     L     
Sbjct: 358 SARTGEGIENLRDHLK--LSMGFSGNMEGGFLARRRHLQALELAATYLQQGKHQLLAARA 415

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 416 G-ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|283480423|emb|CAY76339.1| tRNA modification GTPase trmE [Erwinia pyrifoliae DSM 12163]
          Length = 467

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 169/460 (36%), Positives = 254/460 (55%), Gaps = 26/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH  +TI A +T      + I+R+SG     V + +  K  P PR A    F   DG  
Sbjct: 14  MNH-SDTIVAQATPPGRGGVGILRVSGHKAAGVAQLLLGKL-PKPRYADYLPFRDADGST 71

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+ANPGEFS RAF N
Sbjct: 72  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 131

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   + ++ LTH+R ++EA +DF +
Sbjct: 132 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNRLVEALTHLRIYVEAAIDFPD 191

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  + + + +  S+ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 192 EE-IDFLSDGKIEAQLHQVIDSLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 250

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 251 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 310

Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYS------TYTEEYDHLI 343
            +L +      +     EI        P+ +    +  K+D+          +      +
Sbjct: 311 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIKGVEKVSAHSLIRL 370

Query: 344 SSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400
           S+ TGEG+E L + +K  LS  F   +     + +RHL  L     YL+     L     
Sbjct: 371 SARTGEGIENLRDHLK--LSMGFSGNMEGGFLARRRHLQALELAATYLQQGKHQLLAARA 428

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 429 G-ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 467


>gi|205371772|sp|Q8CX52|MNME_SHEON RecName: Full=tRNA modification GTPase mnmE
          Length = 453

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 256/453 (56%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P PR A   YF    G+++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDKATNVAMAVLGHL-PKPRYADYCYFKSASGQVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S    + +D++TH+R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  + + + +  +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIANALYKIIDKLIAVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348
            +  +   +             P N+    I  K+DL       TEE     + IS+ TG
Sbjct: 302 VDGTTTTAVDPHDIWPDFINRLPTNLGVTVIRNKADLTGENLEMTEEKGYSVYRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G++EL   +KS++  +   L     + +RHL  L     +L++     E     +++AE
Sbjct: 362 LGVDELKQHLKSLMGYQ-SNLEGGFIARRRHLEALEIAASHLQLGKEQLEVYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|293602680|ref|ZP_06685121.1| tRNA modification GTPase TrmE [Achromobacter piechaudii ATCC 43553]
 gi|292818871|gb|EFF77911.1| tRNA modification GTPase TrmE [Achromobacter piechaudii ATCC 43553]
          Length = 450

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 170/438 (38%), Positives = 247/438 (56%), Gaps = 23/438 (5%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           I ++R+SG    ++   + ++    PR A    F   DG +LD+G+ I F +P S+TGED
Sbjct: 19  IGVVRVSGADLSELVRRLFQRDLT-PRHAHYLPFKTSDGELLDEGIAIYFRAPHSYTGED 77

Query: 80  SAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRAFENGKIDLLEAESLADLIS 136
             E   HGG AV+  +LE          +RLA PGEF+RRAF N ++DL +AE++ADLI 
Sbjct: 78  VLELQGHGGPAVLRRVLESCVAAGRDLGVRLAEPGEFTRRAFLNDRMDLAQAEAVADLID 137

Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED--VQNFSSKEVLN 194
           + +    R +M  +SGE S+   +  D++ H+R  +EA LDF EEE   ++ + ++  L+
Sbjct: 138 ASSVAAARGAMASLSGEFSARVNELSDRIIHLRMLVEATLDFPEEEIDFLEKYQARPTLD 197

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
               L  D+S  I+Q + G I+R G  +V+ G  N GKSSL NALA  D+AIVT I GTT
Sbjct: 198 ---ALTADLSKLIAQARQGVILREGLHVVLAGQPNVGKSSLLNALAGDDIAIVTPIAGTT 254

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK-------E 307
           RD +  ++ ++G  + I DTAG+RET+D VE  GI RT+ E+E AD+IL L+       E
Sbjct: 255 RDKVVQEIHIDGVPLHIVDTAGLRETEDTVESIGIARTWQEIERADVILHLQDATQPGDE 314

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYST--YTEEYDHLISSFTGEGLEELINKIKSILS-N 364
           ++++     P     + +  K DL ST     E +  IS+  G GL+ L   +  I   N
Sbjct: 315 LDAQITARLPPRTPVLKVFNKVDLLSTAFAPGEGELGISAKRGAGLDALRAALLHIAGWN 374

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGC 422
              + P+   + +RHL+ L Q   +L +A     + D  LD+ AE LRLA  SL  ITG 
Sbjct: 375 PGAESPWL--ARERHLHALQQAAEHLALAGEHAGQDDRVLDLFAEELRLAHESLSSITGK 432

Query: 423 VDVEQLLDIIFSKFCIGK 440
              + LL  IFS FCIGK
Sbjct: 433 FTSDDLLGEIFSSFCIGK 450


>gi|294638333|ref|ZP_06716586.1| tRNA modification GTPase TrmE [Edwardsiella tarda ATCC 23685]
 gi|291088586|gb|EFE21147.1| tRNA modification GTPase TrmE [Edwardsiella tarda ATCC 23685]
          Length = 455

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 169/460 (36%), Positives = 254/460 (55%), Gaps = 35/460 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SGP    V + +  K  P PR A    F   DG +LD+G+
Sbjct: 6   DTIVAQATAPGRGGVGILRVSGPQAQAVAQALLGKL-PKPRYADYLPFRDQDGTLLDQGI 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ + ++P LR+A PGEFS RAF N K+DL
Sbjct: 65  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILQLPGLRIARPGEFSERAFLNDKMDL 124

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 125 AQAEAIADLIDASSEQAARSAVNSLQGVFSARVNQLVESLTHLRIYVEAAIDFPDEE-ID 183

Query: 186 NFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
             S  ++   LN ++    D+ +   QG L   +R G K+VI G  NAGKSSL NALA +
Sbjct: 184 FLSDGKIEAQLNAVMHELADVRAEARQGSL---LREGMKVVIAGRPNAGKSSLLNALAGR 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 241 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 300

Query: 303 LLLKE-----------INSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHL---ISS 345
           L + +           I        P ++    +  K+D+       +  + H    +S+
Sbjct: 301 LFMVDGTTTDATDPATIWPDFIARLPASLPITVVRNKADVTGEPLGISTSHGHTLVRLSA 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--- 402
            TG G++ L + +K  +  +   L     + +RHL  L Q   +L+      KD  L   
Sbjct: 361 RTGAGIDVLRDHLKQSMGFE-THLEGGFLARRRHLQALEQAAIHLQQG----KDQLLGAM 415

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE LRLA  SL +ITG    + LL  IF+ FCIGK
Sbjct: 416 AGELLAEELRLAQQSLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|270158409|ref|ZP_06187066.1| tRNA modification GTPase TrmE [Legionella longbeachae D-4968]
 gi|289166752|ref|YP_003456890.1| GTPase [Legionella longbeachae NSW150]
 gi|269990434|gb|EEZ96688.1| tRNA modification GTPase TrmE [Legionella longbeachae D-4968]
 gi|288859925|emb|CBJ13911.1| GTPase [Legionella longbeachae NSW150]
          Length = 452

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 171/454 (37%), Positives = 256/454 (56%), Gaps = 24/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR------ 59
           ETI AV+T      + I+RLSGP  + +   +   K   PR A+   F+           
Sbjct: 4   ETIVAVATPPGRGGVGILRLSGPQAYSIAISLNGNKTLQPRLATFCSFYSCSHSNEEEIS 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+G++I F  P SFTGED  E   HG   V++ + +E   +   RLA PGEFS RAF 
Sbjct: 64  VVDQGIMIYFKQPHSFTGEDVVEIQAHGSPVVLDMLTKECVHL-GARLARPGEFSERAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N KIDL +AE++ADLI + ++   R++ + + GE SS   Q  +++ H+R ++EA +DF 
Sbjct: 123 NDKIDLTQAEAIADLIQASSQTAARMAFKSLQGEFSSKIAQLNEQIIHLRLYVEAAIDFP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EEE +   +  +V   +  L + + +  SQ   G I+R G  +VI G  NAGKS+L N L
Sbjct: 183 EEE-IDFLNDGKVAQLLQNLLDKLDAIRSQANQGVILREGLSVVIAGRPNAGKSTLINCL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A +DVAIVT+I GTTRDV+   + L+   + I DTAG+R++DDIVEKEGIKR + E++ A
Sbjct: 242 AGRDVAIVTEIAGTTRDVMREHILLDDIPLHIIDTAGLRDSDDIVEKEGIKRAWEELKKA 301

Query: 300 DLILLLKEINS-------KKEI--SFPKNIDFIFIGTKSDLY--STYTEEYDHLISSFTG 348
           D +LL+ +IN         +EI  S P  +  I +  K D    S   E +   + + +G
Sbjct: 302 DCVLLVVDINDLELHHDLSQEIRTSLPAEVPIITLFNKIDTLGRSAQVENHSVYLCAKSG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEKDCGLDIIA 406
           EG++ L   IK ++  +  +  F   + +RHL  L +   +  +    L E   G +++A
Sbjct: 362 EGVDALKQLIKQVVGYQPNEGQFL--ARRRHLRALDEAKDILLVGQQQLAEHRAG-ELLA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 EDLRLAHQTLCEITGEFSSDDLLGRIFSSFCIGK 452


>gi|77464808|ref|YP_354312.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides 2.4.1]
 gi|123590764|sp|Q3IYH3|MNME_RHOS4 RecName: Full=tRNA modification GTPase mnmE
 gi|77389226|gb|ABA80411.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides 2.4.1]
          Length = 428

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 164/440 (37%), Positives = 249/440 (56%), Gaps = 18/440 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFFGLDGRILDK 63
           +TI+A+++    + ++++RLSGP   +  +       P P  R A+LR     +G +LD+
Sbjct: 2   DTIYALASARGKAGVAVLRLSGPRSHEAVQAFGV---PLPSLRHAALRRLT-WNGEVLDE 57

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L+++F +  SFTGE SAE H+HG  A V+ +L  L+ +P LR A  GEF+RRA ENG++
Sbjct: 58  ALVLLFGAGASFTGETSAELHLHGSPAAVSSVLRVLSGLPGLRAAEAGEFTRRALENGRL 117

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL + E LADLI +ETE QRR +M   SG +     +W   L    + +EA +DF+ +ED
Sbjct: 118 DLAQVEGLADLIDAETEAQRRQAMRVFSGAIGERAERWRADLIRAAALLEATIDFA-DED 176

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V    + EVL  I  L  D+   +   ++ E IR+G+++ I+G  NAGKS+L NALA+++
Sbjct: 177 VPVDVTPEVLTLIDGLLADLRREVDGSRIAERIRDGFEVAIVGAPNAGKSTLLNALARRE 236

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL-I 302
            AI ++I GTTRDV+ + +DL+G  V   DTAG+R+T D+VE  GI+R     + ADL +
Sbjct: 237 AAITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRDTSDLVESLGIERAVTRAKAADLRV 296

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
            LL +      I+     D + +  K+DL           +S  TGEG+ EL+  I   L
Sbjct: 297 FLLDDSGPLSGITV--QADDLVVQGKADLRPGQGLR----LSGRTGEGVPELVAAIGERL 350

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKIT 420
             +         + +RH   + + +  +E   A L       ++ A++LR A  SL  + 
Sbjct: 351 LGRTAG--AGSLTRERHRLAIERAIGAMESVRAELLRGQQHTELAADDLRRAIRSLDSLV 408

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G VDVE LL  IF+ FCIGK
Sbjct: 409 GRVDVESLLGEIFASFCIGK 428


>gi|238899053|ref|YP_002924735.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259495842|sp|C4K7P4|MNME_HAMD5 RecName: Full=tRNA modification GTPase mnmE
 gi|229466813|gb|ACQ68587.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 458

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 176/462 (38%), Positives = 260/462 (56%), Gaps = 26/462 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      I I+R+SG +   V + I  K  P  R A    F   +G I
Sbjct: 1   MSH-TDTIVAQATPIGRGGIGILRISGCATKTVAKEILGKL-PRARYAEYLAFKDPEGNI 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL--RLANPGEFSRRAF 118
           LD+G+ + FP+P SFTGED  E   HGG  +++ +L+ +  +P++  R+A PGEFS RAF
Sbjct: 59  LDQGIALYFPAPHSFTGEDVLELQGHGGPIILDLLLKAILNLPDVCVRIARPGEFSERAF 118

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            N K+DL++AE++ADLI + TE   R ++  + G  S    Q I+ LT++R +IEA +DF
Sbjct: 119 LNDKLDLVQAEAVADLIDASTEQAARCALHSLKGTFSLRINQLIESLTYLRVYIEASMDF 178

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+EE +   S  ++   +  + +D+    S+ + G+++R G KIVI G  N GKSSL NA
Sbjct: 179 SDEE-IDFLSDGKIETQLDRVIHDLDKVRSEARQGQLLREGMKIVIAGRPNVGKSSLLNA 237

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVT IPGTTRDVL   + + G  + I DTAG+RET+D VEK GI+R + E+E 
Sbjct: 238 LTGRETAIVTQIPGTTRDVLREQIQINGMPLHIIDTAGLRETEDPVEKIGIERAWNEIEQ 297

Query: 299 ADLILLLKEINSKKEIS----FPK--------NIDFIFIGTKSDLYS-----TYTEEYDH 341
           AD IL + + ++  E +    +P+         +    I  KSD+       T TEE   
Sbjct: 298 ADRILFIVDGSTSSEKTIYPLWPEWEARLSRSRLPITLIRNKSDITGEDVALTETEEGTF 357

Query: 342 L-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
           + +S+ TGEG++ L   ++  +      +     + +RHL  L    +YL  A       
Sbjct: 358 ISLSARTGEGIDLLREHLQQTMGFS-GNMEGGFLARRRHLEALENAAQYLLSARQKWSSG 416

Query: 401 GL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +++AE LRLA   L +ITG V    LL IIFS FCIGK
Sbjct: 417 NFLSELLAEELRLAQQVLSEITGQVSSNDLLGIIFSSFCIGK 458


>gi|77166532|ref|YP_345057.1| tRNA modification GTPase TrmE [Nitrosococcus oceani ATCC 19707]
 gi|123593187|sp|Q3J6L9|MNME_NITOC RecName: Full=tRNA modification GTPase mnmE
 gi|76884846|gb|ABA59527.1| tRNA modification GTPase trmE [Nitrosococcus oceani ATCC 19707]
          Length = 458

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 164/450 (36%), Positives = 260/450 (57%), Gaps = 20/450 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     ++ I+R+SGP C Q+ E +  +  P PR A+  +F    G ILD+GL
Sbjct: 14  DTIAAIATPPGQGSVGIVRVSGPFCRQIAEQVTGRVPP-PRYATFCHFRNRYGEILDQGL 72

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED  E   HGG A+++ +L  + ++  +RLA PGEFS RAF N KIDL
Sbjct: 73  ILYFPGPHSFTGEDVLELQGHGGPAIMDWLLSSVLQL-GVRLARPGEFSERAFLNNKIDL 131

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI S +E   R ++  + GE S+      ++LT +R  +EA++DFS+E D+ 
Sbjct: 132 AQAEAIADLIESASEQAARSALRSLHGEFSAQIQTLREQLTELRCVVEANIDFSDE-DID 190

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                 V   +  +++ + S     + G ++R G ++V+ G  N GKSSL N LA  + A
Sbjct: 191 FIERGMVAERLKEIQSTLQSIHRSARQGALLREGVRVVLAGRPNVGKSSLHNRLAGFEAA 250

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTD+PGTTRD+L  ++ ++G  + +SDTAG+  + D +E+EG++RT  E+ +AD +LL+
Sbjct: 251 IVTDVPGTTRDLLRENITIDGLPIHLSDTAGLHNSKDTIEQEGMRRTREELIHADHVLLV 310

Query: 306 KEINS-----KKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGLE 352
            +  S     ++ I    P ++ +  I  K DL       ++ L      +S+ TG G++
Sbjct: 311 ADDQSGLTEAEQAILDELPDDVTYTLIFNKIDLSGAPAGRWEELQGIALRLSALTGAGMD 370

Query: 353 ELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAENLR 410
            L  ++K     ++  +  FS  + +RHL  L +    + +A     D G  +I+AE LR
Sbjct: 371 LLCQRLKECAGFDRESEGCFS--ARRRHLEALQRAGAAVVVARKILGDKGAEEILAEELR 428

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  +L +ITG    + LL  IFS FCIGK
Sbjct: 429 QAQNALAEITGEYRSDDLLGEIFSTFCIGK 458


>gi|238787834|ref|ZP_04631631.1| tRNA modification GTPase mnmE [Yersinia frederiksenii ATCC 33641]
 gi|238724177|gb|EEQ15820.1| tRNA modification GTPase mnmE [Yersinia frederiksenii ATCC 33641]
          Length = 454

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 166/454 (36%), Positives = 249/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +   V + +  K  P PR A    F  +DG ILD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAAATVAQAVLGKL-PKPRYADYLPFKDVDGSILDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 64  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQADRVLFM 302

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348
            +  +                 P ++    +  K+D+       TE   H    +S+ TG
Sbjct: 303 VDGTTTDATEPSAIWPEFMARLPSSLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L N +K  +            + +RHL  L    ++L      L     G +++A
Sbjct: 363 EGIDLLRNHLKQSMGFT-SNTEGGFLARRRHLQALETAAQHLVQGHEQLVSAHAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|319796642|ref|YP_004158282.1| tRNA modification GTPase trme [Variovorax paradoxus EPS]
 gi|315599105|gb|ADU40171.1| tRNA modification GTPase TrmE [Variovorax paradoxus EPS]
          Length = 469

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 163/466 (34%), Positives = 252/466 (54%), Gaps = 35/466 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           + I A++T +   A+ I+R+SG     + E IC +    PR+A+   F   D   +D GL
Sbjct: 8   DPIVAIATASGRGAVGIVRVSGARLAPLIEAICGRALK-PREATYLPFRDADDEPVDHGL 66

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-------------AKMPNLRLANPGE 112
            I FPSP SFTGED  E   HGG  V+  +L                 ++P LR+A PGE
Sbjct: 67  AIHFPSPNSFTGEDVLELQAHGGTVVLQLLLARCLEAAAEADPVTGRPRLPGLRVAEPGE 126

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           FS+RAF NGKIDL +AE++ADLI + TE   R +   +SG  S       D L H+R  +
Sbjct: 127 FSQRAFLNGKIDLAQAEAIADLIDASTEAAARSAGRSLSGAFSREIHTLRDALIHLRMLV 186

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF EEE +      +    +  L+  +++   + K G ++R G K+VI G  NAGK
Sbjct: 187 EATLDFPEEE-IDFLQKADATGQLARLQTQLAAVQQRAKQGALLREGIKVVIAGQPNAGK 245

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIV+ + GTTRDV++  + + G  + ++DTAG+RE+ D VE+ G+ R 
Sbjct: 246 SSLLNALAGAELAIVSAVAGTTRDVVSQTIQIHGVPLHVADTAGLRESSDEVEQIGVARA 305

Query: 293 FLEVENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSDLYSTYTE 337
           + ++E+AD +L L ++    +  +               P ++  + +  K D   T   
Sbjct: 306 WGQIESADAVLFLHDLTRAAQPDYAAADAEILRGLQGKLPASVPVLDVWNKQDAAPTAAP 365

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLS--QTVRYLEMAS 394
                +S+ TG G+E L +++ ++    ++ +P  +  +  RH+  L   +T   L  + 
Sbjct: 366 ARGIALSAKTGLGIEALRDQLLAMAG--WQSVPEGVYLARARHVQALGKVETHLALAASH 423

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L  +   LD++AE LRLA  +L +ITG    + LL +IFS+FCIGK
Sbjct: 424 LAAQAQLLDLLAEELRLAQNALNEITGEFGADDLLGVIFSRFCIGK 469


>gi|260912765|ref|ZP_05919251.1| tRNA modification GTPase TrmE [Pasteurella dagmatis ATCC 43325]
 gi|260633143|gb|EEX51308.1| tRNA modification GTPase TrmE [Pasteurella dagmatis ATCC 43325]
          Length = 476

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 171/464 (36%), Positives = 255/464 (54%), Gaps = 41/464 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V   +  K  P PR A    F  LDG +LD+G
Sbjct: 26  KETIVAQATAPGRGGIGILRVSGPKAVEVANTVLGKC-PKPRMADYLPFKDLDGTVLDQG 84

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 85  IALYFKAPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 144

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +
Sbjct: 145 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-I 203

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LNDI+   N + S   QG    I+R G K+VI G  NAGKSSL NALA 
Sbjct: 204 DFLADGKIEAHLNDIIEQLNKVRSEAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAG 260

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD 
Sbjct: 261 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADR 320

Query: 302 ILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------------YSTYTEE 338
           ILL+ +   +                P  I    +  K+DL            Y+  T  
Sbjct: 321 ILLMLDSTEQDNQNLDNVWPEFLAKLPSQIPVTIVRNKADLSGEAEGIQENSGYTIVT-- 378

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396
               +S+ T +G+E L   +K  +  +   +     + +RHL  L +   +L++    L 
Sbjct: 379 ----LSAKTQQGVELLREHLKQSMGYQ-TNMEGGFLARRRHLDALEKAAEHLQLGHVQLT 433

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   G +++AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 434 QFYAG-ELLAEELRMVQEHLSEITGQFTSDDLLGNIFSSFCIGK 476


>gi|145637307|ref|ZP_01792968.1| tRNA modification GTPase [Haemophilus influenzae PittHH]
 gi|145269559|gb|EDK09501.1| tRNA modification GTPase [Haemophilus influenzae PittHH]
          Length = 452

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 168/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + K+  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILKIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESVDLSKVRSEFLAKLPSTLPVTMVRNKIDLNGEQASESEQGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|313669190|ref|YP_004049474.1| thiophene and furan oxidation protein [Neisseria lactamica ST-640]
 gi|313006652|emb|CBN88118.1| probable thiophene and furan oxidation protein [Neisseria lactamica
           020-06]
          Length = 448

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 167/456 (36%), Positives = 256/456 (56%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + E +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K  +   + P  +  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRMILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GDGLDALKRMLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 LAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|68249586|ref|YP_248698.1| tRNA modification GTPase TrmE [Haemophilus influenzae 86-028NP]
 gi|81335985|sp|Q4QLQ9|MNME_HAEI8 RecName: Full=tRNA modification GTPase mnmE
 gi|68057785|gb|AAX88038.1| probable tRNA modification GTPase TrmE [Haemophilus influenzae
           86-028NP]
          Length = 452

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 255/455 (56%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N + +  S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLENVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L + +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLRDHLKQAMGFQ-TGIEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|194909733|ref|XP_001981998.1| GG12352 [Drosophila erecta]
 gi|190656636|gb|EDV53868.1| GG12352 [Drosophila erecta]
          Length = 493

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 169/478 (35%), Positives = 261/478 (54%), Gaps = 52/478 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGR-ILDK 63
           TI+++S+G +   +S+IR+SGP   +    I   K+  P  R+A L+ F+    + ++D+
Sbjct: 24  TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYEPKARQAYLKSFYHPASKEMIDR 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGEDS EF VHG +AV+  +L+ L ++  LR A PGEF++RAF  GK+
Sbjct: 84  GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGRVDGLRPAAPGEFTKRAFFGGKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L+ LY  W  +L    + +EA +DF+EEE 
Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  +K +I  H+S  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 204 IEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVTD  GTTRD++    +  GY V  SDTAG+R  T D +E+EG++R    V  +DLI
Sbjct: 264 VSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKNCVVQSDLI 323

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI- 361
           LLL E  +  +++    +        +    +Y  E D  +   +G+ L+ + NK  ++ 
Sbjct: 324 LLLAEAKNIAQLTHDDAV--------APFVDSYLGELDIPLDMCSGKRLQLVANKTDTLS 375

Query: 362 ---------LSN-------KFKKLPFSIPSHKRHLYHL-----------------SQTVR 388
                    LSN       K  K+P  + S ++ L  L                  Q  R
Sbjct: 376 DEEHQQLDKLSNVLAISCHKPDKMPVFLGSLEKQLQELCGEPQAENPRITNTRYRQQLER 435

Query: 389 YLEMASLNEKDCGLD------IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +E   +  +D   D      I A  LR A   + +ITG +  E +LD++F  FCIGK
Sbjct: 436 CIENIDIFLRDYRPDVYPDMAIAASKLRNAVRCIERITGHISCEDILDVVFKDFCIGK 493


>gi|113972266|ref|YP_736059.1| tRNA modification GTPase TrmE [Shewanella sp. MR-4]
 gi|123324470|sp|Q0HD65|MNME_SHESM RecName: Full=tRNA modification GTPase mnmE
 gi|113886950|gb|ABI41002.1| tRNA modification GTPase trmE [Shewanella sp. MR-4]
          Length = 453

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 255/453 (56%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P PR A    F    G+++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDKATDVAMAVLGHL-PKPRYADYCDFKNASGQVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S    + +D++TH+R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  + + +S   +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIANALYKIIDKLSVVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348
            +  +   +             P N+    +  K+DL       TEE     + IS+ TG
Sbjct: 302 VDGTTTDAVDPHDIWPDFIDRLPANLGVTVVRNKADLTGENLAMTEEKGYSVYRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++AE
Sbjct: 362 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALDVAASHLQLGKEQLEIYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|148826352|ref|YP_001291105.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittEE]
 gi|166200480|sp|A5UD71|MNME_HAEIE RecName: Full=tRNA modification GTPase mnmE
 gi|148716512|gb|ABQ98722.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittEE]
          Length = 452

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 169/455 (37%), Positives = 258/455 (56%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATEVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N + +  S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLENVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDL---YSTYTEEYDHLI---SSFT 347
                      L ++ S+     P  +    +  K DL    ++ +EE  + I   S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEEGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGIEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|187479888|ref|YP_787913.1| tRNA modification GTPase TrmE [Bordetella avium 197N]
 gi|123513530|sp|Q2KTI2|MNME_BORA1 RecName: Full=tRNA modification GTPase mnmE
 gi|115424475|emb|CAJ51029.1| probable tRNA modification GTPase [Bordetella avium 197N]
          Length = 450

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 170/450 (37%), Positives = 250/450 (55%), Gaps = 23/450 (5%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A++T      I ++R+SGP        +  +    PR A    F   DG  +D+G+ I
Sbjct: 7   IAAIATAPGRGGIGVVRVSGPRLDAYIRALLGRDL-TPRHAHYLPFLAEDGERIDEGIAI 65

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRAFENGKID 124
            F  P S+TGED  E   HGG AV+  +L    E  +   +RLA PGEF+RRAF N ++D
Sbjct: 66  YFQGPHSYTGEDVLELQGHGGPAVLKRLLARCLEAGRSLGMRLAEPGEFTRRAFLNDRMD 125

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED- 183
           L +AE++ADLI + +E   R +M  +SGE S        ++ H+R  +EA LDF EEE  
Sbjct: 126 LAQAEAVADLIEASSEAAARGAMASLSGEFSQRINDLSGRIVHLRMLVEATLDFPEEEID 185

Query: 184 -VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            ++ + ++  L+    L+ D+ + I+Q + G I+R G  +V+ G  N GKSSL NALA  
Sbjct: 186 FLEKYQARPTLDG---LRQDLDTLIAQARQGIILREGLHVVLAGQPNVGKSSLLNALAGD 242

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D+AIVT I GTTRD +  ++ ++G  + I DTAG+RET+D VE  GI RT+ E+E ADLI
Sbjct: 243 DIAIVTPIAGTTRDKVVQEIFIDGVPLHIVDTAGLRETEDTVESIGIARTWKEIERADLI 302

Query: 303 LLLKEINSKKEI-------SFPKNIDFIFIGTKSDLYSTYTE--EYDHLISSFTGEGLEE 353
           L L++  +  +I         P     + +  K DL ++  +  E    IS+  G GLEE
Sbjct: 303 LHLQDATAPGDILDVDITARLPARTPVLAVFNKIDLLTSTAQLAENSIGISAKQGLGLEE 362

Query: 354 LINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLR 410
           L  ++  +   N   + P+   + +RHL+ L     +L++A+   +  D  LD+ AE LR
Sbjct: 363 LRARLLQMAGWNPGAESPWL--ARERHLHALQAARDHLDIAAEHASHDDRVLDLFAEELR 420

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L+  SL  ITG    + LL  IFS FCIGK
Sbjct: 421 LSHESLSSITGKFTSDDLLGEIFSSFCIGK 450


>gi|259417693|ref|ZP_05741612.1| tRNA modification GTPase TrmE [Silicibacter sp. TrichCH4B]
 gi|259346599|gb|EEW58413.1| tRNA modification GTPase TrmE [Silicibacter sp. TrichCH4B]
          Length = 428

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 163/438 (37%), Positives = 254/438 (57%), Gaps = 14/438 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T    + +++IR+SGP+  QV + + ++  P  R          +G+ILD+ L
Sbjct: 2   DTIFALATSQGKAGVAVIRVSGPNAIQVGKNLTRRTLP-ARGMIFSKLKDKEGQILDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL-RLANPGEFSRRAFENGKID 124
           ++ F +P+SFTGE+  EF +HG  AVV+ ++  L ++ NL RLA+PGEF+RRA +NGK+D
Sbjct: 61  VLSFTAPDSFTGENIVEFQIHGSTAVVSAVMSAL-EVSNLARLADPGEFTRRALDNGKLD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L + E LADLI +ETE QR+ +   +SG L +L  +W   L    S IE  +DF++EE V
Sbjct: 120 LTQVEGLADLIDAETEAQRKQAQVILSGALGALADRWRTDLIRAASLIEVTIDFADEE-V 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + EV   +  +  DI   +    + E IR G+++ I+G  N GKS+L NALA ++ 
Sbjct: 179 PVDVTPEVGALLFGVFTDIQKEVQGVSIAERIREGFEVAIVGSPNVGKSTLLNALAGRNA 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI ++  GTTRDV+ + +DL G  V + DTAG+R+TDD VE  GI+        AD+ + 
Sbjct: 239 AITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRDTDDHVEGIGIQLAQERANAADIRVF 298

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           L E N   ++ F ++ D   +    +  +T        IS  TG+G+++L++ I S L N
Sbjct: 299 LAEENETFDVPF-RDGDLSLLPKADERDATR-----GAISGKTGQGIDDLVSHIASTLKN 352

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGC 422
           +       I +  RH   + + +  L+ A   L +     D+ AE++R A  +L  + G 
Sbjct: 353 RSTHA--GIATRARHRDAMKRALESLQRAIDVLQQGPEFYDLAAEDMRSAIRALELLVGR 410

Query: 423 VDVEQLLDIIFSKFCIGK 440
           +DVE LLD IFS FC+GK
Sbjct: 411 IDVENLLDEIFSSFCLGK 428


>gi|145634177|ref|ZP_01789888.1| tRNA modification GTPase [Haemophilus influenzae PittAA]
 gi|145268621|gb|EDK08614.1| tRNA modification GTPase [Haemophilus influenzae PittAA]
          Length = 452

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 254/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATEVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N + +  S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLENVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGIEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|82703888|ref|YP_413454.1| tRNA modification GTPase TrmE [Nitrosospira multiformis ATCC 25196]
 gi|123543757|sp|Q2Y5A9|MNME_NITMU RecName: Full=tRNA modification GTPase mnmE
 gi|82411953|gb|ABB76062.1| tRNA modification GTPase trmE [Nitrosospira multiformis ATCC 25196]
          Length = 452

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 254/453 (56%), Gaps = 23/453 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           + I A++T      I ++R+SG +  Q          P PR+ASL  F   + R++D+G+
Sbjct: 5   DVIAAIATPPGRGGIGVVRVSGRN-LQSLALKVAGCVPEPRRASLTRFRDENDRVIDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P+S+TGE+  E   HGG AV+N +L         RLA PGEF+ RAF N K+DL
Sbjct: 64  ALYFPAPQSYTGEEVLELQGHGGPAVMNLLLASCLSA-GARLAQPGEFTLRAFLNNKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AES+ADLI + TE   R ++  + GE S+     +  LT +R  +EA LDFSEEE ++
Sbjct: 123 AQAESVADLIDASTEEAARCAIRSLQGEFSNAIHTSVQALTDLRMLVEASLDFSEEE-IE 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S +E+   +  ++  +    S  + G ++R G  I ++G  N GKSSL N LA ++VA
Sbjct: 182 FISGRELEFRLEHIRQQLEQVFSAARQGSLLREGIWIALVGQPNVGKSSLLNRLAGEEVA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           +VT++PGTTRDV+   +++EG  + + DTAG+RET+D +EK G+ RT   ++ A ++LLL
Sbjct: 242 LVTEVPGTTRDVIRQVIEIEGVPMHLLDTAGLRETEDAIEKMGMARTRSTIDKASIVLLL 301

Query: 306 KEINSKKEI---------SFPKNIDFIFIGTKSDL--------YSTYTEEYDHLISSFTG 348
             ++S+  I         S P  +  I +  K+DL         ST T   D  +S+ TG
Sbjct: 302 --VDSRVGITPEDQAILASLPPGLRLIVVHNKTDLLESPPNSTVSTATATADIWVSAKTG 359

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAE 407
            G+  L   +  ++  +      +  + +RHL  L+    +LE A +L      +++ AE
Sbjct: 360 AGIGSLQQGLLEMIGWQPSTGEGAFMARQRHLSALTAARTHLEAACALANSLDQVELFAE 419

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LRLA ++L  ITG    + LL  IFS+FCIGK
Sbjct: 420 ELRLAQLALSSITGEFSADDLLGEIFSRFCIGK 452


>gi|260870437|ref|YP_003236839.1| GTPase TrmE [Escherichia coli O111:H- str. 11128]
 gi|257766793|dbj|BAI38288.1| GTPase TrmE [Escherichia coli O111:H- str. 11128]
 gi|323177718|gb|EFZ63302.1| tRNA modification GTPase TrmE [Escherichia coli 1180]
          Length = 454

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 166/459 (36%), Positives = 255/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   +G +LD+
Sbjct: 3   DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDANGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF   K+
Sbjct: 62  GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLYDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|300115604|ref|YP_003762179.1| tRNA modification GTPase TrmE [Nitrosococcus watsonii C-113]
 gi|299541541|gb|ADJ29858.1| tRNA modification GTPase TrmE [Nitrosococcus watsonii C-113]
          Length = 459

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 162/450 (36%), Positives = 252/450 (56%), Gaps = 20/450 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     ++ I+R+SGP C QV + +  +  P PR A   YF   DG ++D+G+
Sbjct: 15  DTIAAIATPPGQGSVGIVRVSGPLCRQVAKQVTGRV-PLPRYALFGYFRNRDGELIDQGV 73

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HG  AV++ +L  + ++   RLA PGEFS RAF N KIDL
Sbjct: 74  ALYFPGPHSFTGEDVLELQGHGSPAVMDWLLSRVLQL-GARLARPGEFSERAFLNNKIDL 132

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI S ++   R ++  + GE S+      ++LT +R  +EA++DFS+E D+ 
Sbjct: 133 AQAEAIADLIESASDQAARSALRSLHGEFSAQIRDLREQLTELRCVVEANIDFSDE-DID 191

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                 V   +  +++ + S     + G ++R G K+V+ G  N GKSSL N LA  + A
Sbjct: 192 FIERGAVAERLKGIQSTLQSIHRSARQGALLREGIKVVLAGRPNVGKSSLHNRLAGFEAA 251

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL- 304
           IVTD+PGTTRD+L   + ++G  + +SDTAG+ ++ D +E+EG++RT  E+ +AD +LL 
Sbjct: 252 IVTDVPGTTRDLLREHVTIDGLPIHLSDTAGLHDSRDTIEQEGMRRTREELTHADHVLLV 311

Query: 305 ------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLE 352
                 L E+        P N+ +  I  K DL       ++        +S+ TG G++
Sbjct: 312 ADDQSGLTEVEQAILDELPDNVTYTLIFNKVDLSGASVGRWEDPQGIALRLSALTGAGMD 371

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLR 410
            L  ++K       ++  +   + +RHL  L +    + +A   L EK    +++AE LR
Sbjct: 372 LLRQRLKECAGFDGEREGY-FSARRRHLEALQRAGAAVVVARKILREKGAE-EMLAEELR 429

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  SL +ITG    + LL  IFS FCIGK
Sbjct: 430 QAQNSLAEITGEYRADDLLGEIFSTFCIGK 459


>gi|311281727|ref|YP_003943958.1| tRNA modification GTPase TrmE [Enterobacter cloacae SCF1]
 gi|308750922|gb|ADO50674.1| tRNA modification GTPase TrmE [Enterobacter cloacae SCF1]
          Length = 454

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 165/459 (35%), Positives = 253/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFNDADGAA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LI 343
            +L + +  +   +             P N+    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAQIWPDFIARLPTNLPITVVRNKADMTGEAVGLSEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+  GEG++ L N +K  +      +     + +RHL  L     +L+   A L     G
Sbjct: 358 SARQGEGVDLLRNHLKQSMGFD-TNMEGGFLARRRHLQALETAANHLQQGKAQLIGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|145640677|ref|ZP_01796260.1| tRNA modification GTPase [Haemophilus influenzae R3021]
 gi|145274603|gb|EDK14466.1| tRNA modification GTPase [Haemophilus influenzae 22.4-21]
          Length = 452

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVQLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGSIFSSFCIGK 452


>gi|238750293|ref|ZP_04611795.1| tRNA modification GTPase mnmE [Yersinia rohdei ATCC 43380]
 gi|238711526|gb|EEQ03742.1| tRNA modification GTPase mnmE [Yersinia rohdei ATCC 43380]
          Length = 497

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 248/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +   V + +  K  P PR A    F  +DG  LD+G+
Sbjct: 48  DTIVAQATPPGRGGVGILRVSGRAAASVAQAVLGKL-PKPRYADYLPFKDIDGSTLDQGI 106

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 107 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 166

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 167 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPDEE-ID 225

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 226 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 285

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE +D VE+ GI+R + E+E AD +L +
Sbjct: 286 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWHEIEQADRVLFM 345

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348
            +  +                 P  +    +  K+D+       TE   H    +S+ TG
Sbjct: 346 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADVTGETLGLTEVNGHSLIRLSARTG 405

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L N +K  +            + +RHL  L    ++L      L     G +++A
Sbjct: 406 EGIDLLRNHLKQCMGFT-SNTEGGFLARRRHLQALETAAQHLVQGHEQLVSARAG-ELLA 463

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 464 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 497


>gi|296313895|ref|ZP_06863836.1| tRNA modification GTPase TrmE [Neisseria polysaccharea ATCC 43768]
 gi|296839424|gb|EFH23362.1| tRNA modification GTPase TrmE [Neisseria polysaccharea ATCC 43768]
          Length = 448

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 167/456 (36%), Positives = 255/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + E +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGVNDKTRAILDALPSELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GDGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 LAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|332253640|ref|XP_003275944.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
           [Nomascus leucogenys]
          Length = 415

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 165/439 (37%), Positives = 239/439 (54%), Gaps = 63/439 (14%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPPARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FPSP+SFTGED  EFHVHGG+AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPSPQSFTGEDCVEFHVHGGLAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQADIEVRALEVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R             
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRA------------ 322

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            +E          + +D +   T S            L+SS  G+               
Sbjct: 323 -RE----------RWVDRVIGKTMS------------LVSSRCGD--------------- 344

Query: 365 KFKKLPFSIP---SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
                P + P   +  RH +HL   +  L       KD  L + AE LR+A   L ++TG
Sbjct: 345 -----PSTDPPLLTRARHQHHLQGCLDALGHYK-QSKD--LALAAEALRVARGHLTRLTG 396

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               E++LDIIF  FC+GK
Sbjct: 397 GGGTEEILDIIFRDFCVGK 415


>gi|262040470|ref|ZP_06013713.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042223|gb|EEW43251.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 454

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 163/459 (35%), Positives = 255/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKL-PKPRYADYLPFNDVDGTP 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLHEVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D VE+ GI+R + E+  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIAQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS-----TYTEEYDHL-I 343
            +L + +  +   +             P  +    +  K+D+       +    + H+ +
Sbjct: 298 RVLFMVDGTTTGAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGISEVNGHSHIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG+E L N +K  +      +     + +RHL  L +   +L+   A L     G
Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|254804213|ref|YP_003082434.1| putative tRNA modification GTPase [Neisseria meningitidis alpha14]
 gi|254667755|emb|CBA03677.1| putative tRNA modification GTPase [Neisseria meningitidis alpha14]
          Length = 448

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 255/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PKPRTATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGVNDKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GDGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 LAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|301169727|emb|CBW29328.1| GTPase [Haemophilus influenzae 10810]
          Length = 452

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVQLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|195504826|ref|XP_002099245.1| GE10804 [Drosophila yakuba]
 gi|194185346|gb|EDW98957.1| GE10804 [Drosophila yakuba]
          Length = 493

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 169/478 (35%), Positives = 260/478 (54%), Gaps = 52/478 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGR-ILDK 63
           TI+++S+G +   +S+IR+SGP   +    I   K+  P  R+A L+ F+    + ++D+
Sbjct: 24  TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYEPKARQAYLKSFYHPASKEMIDR 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGEDS EF VHG +AV+  +L+ L K+  LR A PGEF++RAF  GK+
Sbjct: 84  GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L+ LY  W  +L    + +EA +DF+EEE 
Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  +K +I  H+S  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 204 IEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVTD  GTTRD++    +  GY V  SDTAG+R  T D +E+EG++R    +  +DLI
Sbjct: 264 VSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKNCLVQSDLI 323

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI- 361
           LLL E     +++    +        +    +Y  E D  +   +G+ L+ + NK  ++ 
Sbjct: 324 LLLAEAKHIAQLTHDDAV--------APFVDSYLGELDIPLDMCSGKRLQLVANKTDTLS 375

Query: 362 ---------LSN-------KFKKLPFSIPSHKRHLYHL-----------------SQTVR 388
                    LSN       K  K+P  + S ++ L  L                  Q  R
Sbjct: 376 DEEHQQLDKLSNVLAISCHKPDKMPVFLGSLEKQLQELCGEPRAENPRITNTRYRQQLER 435

Query: 389 YLEMASLNEKDCGLD------IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +E   +  +D   D      I A  LR A   + +ITG +  E +LD++F  FCIGK
Sbjct: 436 CIENIDIFLRDYRPDVYPDMAIAASKLRNAVRCIERITGHISCEDILDVVFKDFCIGK 493


>gi|294671265|ref|ZP_06736117.1| hypothetical protein NEIELOOT_02974 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306992|gb|EFE48235.1| hypothetical protein NEIELOOT_02974 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 454

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 166/458 (36%), Positives = 257/458 (56%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  + TI A++T      + +IRLSG +   + + +   K P PR A    F G DG+ 
Sbjct: 1   MSATQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGQP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+L+ F +P SFTGED  E   HGG  V++ +L    ++   R+A PGEF++RAF N
Sbjct: 61  IDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + ++   R+++  + G  S    + +D L  +R  +EA LDF E
Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  + + ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 180 E-DIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D+AIVTDI GTTRD +   + L+G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298

Query: 301 LILLL----KEINSKKEI---SFPKNIDFIFIGTKSDLYS-TYTEEYDHL---------- 342
           + L+L    + +N+K +    S P  +  I I  K+DL         D L          
Sbjct: 299 VALILIDPREGVNAKTQAILNSLPAGLKKIEIHNKADLTGEPVAVRSDGLAQTGADTVIS 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TG GL+ L + +   +  + +     + +  RHL  L +    LE A+L + +  +
Sbjct: 359 LSAKTGAGLDLLKHALLQEVGWQGESESLFL-ARSRHLNALHKAEAELENAALCDNNQ-I 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ AE+LRLA  +  +ITG    + LL +IFS+FCIGK
Sbjct: 417 ELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454


>gi|304388556|ref|ZP_07370656.1| tRNA modification GTPase TrmE [Neisseria meningitidis ATCC 13091]
 gi|304337453|gb|EFM03622.1| tRNA modification GTPase TrmE [Neisseria meningitidis ATCC 13091]
          Length = 448

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 167/456 (36%), Positives = 255/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T +    + +IR+SG +   + E +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATASGRGGVGVIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRAILDTLPSELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GNGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 LAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|114049515|ref|YP_740065.1| tRNA modification GTPase TrmE [Shewanella sp. MR-7]
 gi|123030127|sp|Q0HPE7|MNME_SHESR RecName: Full=tRNA modification GTPase mnmE
 gi|113890957|gb|ABI45008.1| tRNA modification GTPase trmE [Shewanella sp. MR-7]
          Length = 453

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 255/453 (56%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P PR A    F    G+++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDKATDVAMAVLGHL-PKPRYADYCDFKNASGQVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALYFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S    + +D++TH+R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  + + +S   +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIANALYKIIDKLSVVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348
            +  +   +             P N+    +  K+DL       TEE     + IS+ TG
Sbjct: 302 VDGTTTDAVDPHDIWPDFINRLPANLGVTVVRNKADLTGENLAMTEEKGYSVYRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++AE
Sbjct: 362 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALDIAASHLQLGKEQLEIYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|330831723|ref|YP_004394675.1| tRNA modification GTPase mnmE [Aeromonas veronii B565]
 gi|328806859|gb|AEB52058.1| tRNA modification GTPase mnmE [Aeromonas veronii B565]
          Length = 453

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 169/453 (37%), Positives = 251/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SGP+  QV   +  K  P  R A    F    G++LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIVRVSGPAAEQVAGIVLGKL-PRVRYAEYLPFRDEQGQVLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            ++F +P SFTGED  E   HGG  +++ ++  + K+  +R A PGEFS RAF N K+DL
Sbjct: 63  ALLFKAPNSFTGEDVLELQGHGGPVIMDMLIRRILKIDGIRPARPGEFSERAFINDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M  + G+ SS   Q ++ L  +R ++EA +DF +EE + 
Sbjct: 123 AQAEAIADLIEASSEQAARSAMHSLQGQFSSKIQQLVESLIRLRIYVEAAIDFPDEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  +V  D+  + +++     + K G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 182 FLSDGKVAGDLYAIMSELDDVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGRESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+E AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDKVEQIGIERAWAEIEQADRVLFM 301

Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHL---ISSFTG 348
                      +EI  +     PKNI    I  K+DL       ++E  H    IS+ T 
Sbjct: 302 VDGTTTDAVDPREIWPEFVDRLPKNIGLTVIRNKADLTGEDLAPSQELGHAVYRISAKTE 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            GL  L   +K+ +  +         + +RHL  L +    L +A    E     +++AE
Sbjct: 362 LGLPALREHLKACMGFQ-GNTEGGFMARRRHLDALERAAERLLVAKEQLEVFVAGELVAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453


>gi|325983265|ref|YP_004295667.1| tRNA modification GTPase TrmE [Nitrosomonas sp. AL212]
 gi|325532784|gb|ADZ27505.1| tRNA modification GTPase TrmE [Nitrosomonas sp. AL212]
          Length = 464

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 168/448 (37%), Positives = 254/448 (56%), Gaps = 18/448 (4%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A++T      I +IR+SG +  ++ + I  K  P PR ASL  F   +G+I+D+G+++
Sbjct: 20  IAAIATPPGRGGIGVIRISGNNLAKLAQVILGKL-PKPRHASLGKFLDTEGQIIDQGIVL 78

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127
            FP P S+TGED  E H HGG AV+N +L+        RLA PGEF+ RA+ N KIDL++
Sbjct: 79  YFPGPHSYTGEDVLELHGHGGPAVINLLLKSCLSA-GARLAQPGEFTLRAYLNNKIDLIQ 137

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           AES+A LI + T+   R ++  + G  S+     +  L  +R  IEA LDF E+E + N 
Sbjct: 138 AESVAALIEASTQEAARCAVNSLQGHFSARIDVLVGLLITLRMLIEATLDFPEDE-IDNL 196

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
            + ++   +  +   +   +S  + G +++ G +IV+ G  N GKSSL N L ++D AIV
Sbjct: 197 KTLQIREKLDHIVAQLEQTLSGARQGNLLQEGIRIVLAGAPNVGKSSLLNQLVEEDAAIV 256

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           T+IPGTTRD +   + L G  + I DTAG+RET DIVE++GI+RT   ++ A+L+L L +
Sbjct: 257 TEIPGTTRDTIHRTITLGGMPIHIIDTAGLRETGDIVEQKGIERTLAAIKCANLVLRLLD 316

Query: 308 INSKKEIS-------FPKNIDFIFIGTKSDLYS----TYTEEYDHLI--SSFTGEGLEEL 354
            +  +  +        P +   I +  K DL +       +E++ +I  S+ TG G+E L
Sbjct: 317 SSQHQPAAPDPIKQYIPDDKPQITVFNKIDLRNESPKMEADEHNSIIHLSAKTGAGIELL 376

Query: 355 INKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAENLRLA 412
             KI  +   +F      I  + +RHL  L+Q   +L+ A    E +  L++IAE LRLA
Sbjct: 377 RQKILHLAGWQFNHAGEGIFMARQRHLEALTQASAHLQNAQEYAENEYQLELIAEELRLA 436

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +L  ITG    + LL  IFS FCIGK
Sbjct: 437 QTALSAITGQFTADDLLGEIFSHFCIGK 464


>gi|118602976|ref|YP_904191.1| tRNA modification GTPase TrmE [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|166234818|sp|A1AXR3|MNME_RUTMC RecName: Full=tRNA modification GTPase mnmE
 gi|118567915|gb|ABL02720.1| tRNA modification GTPase trmE [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 447

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 172/458 (37%), Positives = 264/458 (57%), Gaps = 29/458 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLD 57
           MN  + TI A+++G     I ++R+SGP    +C+ I KK     P PR A    FF  +
Sbjct: 1   MNSSETTICALASGVCKGGIGVVRVSGP----LCKVIAKKMLGFVPKPRYAHYGLFFDQE 56

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +DKG+ + FP P SFTGED  EF  HGG++V+  +LE +  M   + A+PGEFS+RA
Sbjct: 57  NDEIDKGIALFFPKPHSFTGEDILEFQGHGGMSVMCCLLESVISM-GAKPADPGEFSKRA 115

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK++L++AE++AD+I++ ++   + +   +SGE S+        +  +R F+EA +D
Sbjct: 116 FLNGKMNLVQAEAVADMINANSKRASKSAFRSLSGEFSNQVNALTKSIVELRVFVEATID 175

Query: 178 FSEEE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           FS+EE D   F  ++V      +K  + + +     G I+R G  +VI G  NAGKSSL 
Sbjct: 176 FSDEEIDFLQF--EQVKLKAKGIKQAVETILKSATQGVILREGLNVVIAGKPNAGKSSLL 233

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL ++  AIVTDI GTTRDVL   + + G  + I DTAG+ ++DD +EKEGIKR   E+
Sbjct: 234 NALTQESSAIVTDIAGTTRDVLKETICVNGMPLNIIDTAGLHDSDDKIEKEGIKRAHFEI 293

Query: 297 ENADLILLLKEI-NSKKEIS-FPKNID---FIFIGTKSDLYSTYTEE------YDHLISS 345
           E AD++L++ +  + K + S  PKNID    + I  K DL S   ++          IS+
Sbjct: 294 ERADVVLMVFDAQDDKPDFSILPKNIDDQPLLLIKNKVDLISGAVKKEMINNIVQLSISA 353

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
              +G+E L  ++  I   +     FS   + S KRH+  L +++  ++ A +  ++  +
Sbjct: 354 KHSKGMELLRKELSDIAGLE----DFSEGVVLSRKRHIIALEESLASIDNAIMQLENGVV 409

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE+LR A   +G ITG    + LL  IFS FCIGK
Sbjct: 410 ELMAEDLRFAGQFMGSITGEFSSDDLLGEIFSSFCIGK 447


>gi|254671681|emb|CBA09438.1| putative tRNA modification GTPase [Neisseria meningitidis alpha153]
          Length = 448

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 167/456 (36%), Positives = 255/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T +    + +IR+SG +   + E +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATASGRGGVGVIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GDGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|205829165|sp|A8ACL8|MNME_CITK8 RecName: Full=tRNA modification GTPase mnmE
          Length = 454

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 164/459 (35%), Positives = 255/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +L+   + L     G
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLQQGKSQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|161170269|gb|ABX59239.1| predicted GTPase [uncultured marine bacterium EB000_55B11]
 gi|297183798|gb|ADI19921.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 432

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 169/445 (37%), Positives = 251/445 (56%), Gaps = 29/445 (6%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           IFA+++    + +S+IR+SG +     E I +K      K  LR  +  +  ++D+ L++
Sbjct: 5   IFALTSAKGRAGVSVIRISGDNSITSVEKILRKNLSSNNKC-LRKIYDSNNSVIDEVLIL 63

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127
            F    SFTG+++ E H HG IAVV+ IL  L+ + N R+A PGEF+R+A ENG +DL++
Sbjct: 64  TFKKSASFTGDETVEIHCHGSIAVVSHILRTLSSLENFRIAEPGEFTRKALENGNLDLIQ 123

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
            E LADLI SETE QRRL++  M G LS     W   L    S IEA +DF+ +ED+   
Sbjct: 124 VEGLADLIESETEAQRRLAVRSMDGALSKKVQIWRKDLIRAVSLIEATIDFA-DEDIPTD 182

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
            + EVL+ I   + +I S I      E IR G+++ I+G  N GKS+L NALA +D AI 
Sbjct: 183 VTPEVLDLINKTQIEIKSEIDGSFAAERIREGFEVAIVGPPNIGKSTLLNALAGRDAAIT 242

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +D+ GTTRDV+ + +D+ G+ V + DTAG+RET D VEK G++      +NAD+ + +  
Sbjct: 243 SDVAGTTRDVIEVKMDINGFAVTLLDTAGLRETTDKVEKIGVELAKTRAKNADIRVFITH 302

Query: 308 INSKKEISF-PKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNK 365
             +  E+   P+  D I IG KSDL     ++ D L IS  +GEGL+ L+  I  IL + 
Sbjct: 303 DGTVNELKLKPELNDIIVIG-KSDLL----DKTDILSISGKSGEGLDSLLKTISDILEDL 357

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV----------S 415
              +     + +RH   + +  +YL        D G  ++ ++L L+            +
Sbjct: 358 C--VGAQTATRERHRVAMVKAQKYL--------DEGKALMVDSLELSEFASSEFHQGIQT 407

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           L  + G V VE LLD IFS FC+GK
Sbjct: 408 LSSLIGSVGVEDLLDEIFSSFCLGK 432


>gi|206578096|ref|YP_002241307.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae 342]
 gi|288937945|ref|YP_003442004.1| tRNA modification GTPase TrmE [Klebsiella variicola At-22]
 gi|290511686|ref|ZP_06551054.1| tRNA modification GTPase TrmE [Klebsiella sp. 1_1_55]
 gi|254811487|sp|B5XZP4|MNME_KLEP3 RecName: Full=tRNA modification GTPase mnmE
 gi|206567154|gb|ACI08930.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae 342]
 gi|288892654|gb|ADC60972.1| tRNA modification GTPase TrmE [Klebsiella variicola At-22]
 gi|289775476|gb|EFD83476.1| tRNA modification GTPase TrmE [Klebsiella sp. 1_1_55]
          Length = 454

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 164/459 (35%), Positives = 254/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKL-PKPRYADYLPFNDVDGTP 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LI 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTSAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGLSEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG+E L N +K  +      +     + +RHL  L +   +L+   A L     G
Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TSMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|126463651|ref|YP_001044765.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides ATCC 17029]
 gi|205415802|sp|A3PNS7|MNME_RHOS1 RecName: Full=tRNA modification GTPase mnmE
 gi|126105315|gb|ABN77993.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides ATCC 17029]
          Length = 428

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 163/438 (37%), Positives = 248/438 (56%), Gaps = 14/438 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+++    + ++++RLSGP   +  +       P  R A+LR     D  +LD+ L
Sbjct: 2   DTIYALASARGKAGVAVLRLSGPRSHEAVQAFGVLLPPL-RHAALRRLTWND-EVLDEAL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +++F +  SFTGE SAE H+HG  A V+ +L  L+ +P LR A  GEF+RRA ENG++DL
Sbjct: 60  VLLFGAGASFTGETSAELHLHGSPAAVSSVLRVLSGLPGLRAAEAGEFTRRALENGRLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QRR +M   SG +     +W   L    + +EA +DF+ +EDV 
Sbjct: 120 AQVEGLADLIDAETEAQRRQAMRVFSGAIGERAERWRADLIRAAALLEATIDFA-DEDVP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EVL  I  L  D+   +   ++ E IR+G+++ I+G  NAGKS+L NALA+++ A
Sbjct: 179 VDVTPEVLTLIDGLLADLRREVDGSRIAERIRDGFEVAIVGAPNAGKSTLLNALARREAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL-ILL 304
           I ++I GTTRDV+ + +DL+G  V   DTAG+R+T D+VE  GI+R     + ADL + L
Sbjct: 239 ITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRDTSDLVESLGIERAVTRAKAADLRVFL 298

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           L +      I+     D + +  K+DL   +       +S  TGEG+ EL+  I   L  
Sbjct: 299 LDDSGPLPGITV--QADDLVVQGKADLRPGHGLR----LSGRTGEGVPELVAAIGERLLG 352

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITGC 422
           +         + +RH   + + +  +E   A L       ++ A++LR A  SL  + G 
Sbjct: 353 RTAG--AGSLTRERHRLAIERAIGAMESVRAELLRGQQHTELAADDLRRAIRSLDSLVGR 410

Query: 423 VDVEQLLDIIFSKFCIGK 440
           VDVE LL  IF+ FCIGK
Sbjct: 411 VDVESLLGEIFASFCIGK 428


>gi|45550813|ref|NP_651251.3| CG18528 [Drosophila melanogaster]
 gi|17946252|gb|AAL49166.1| RE57978p [Drosophila melanogaster]
 gi|17946567|gb|AAL49314.1| RH13838p [Drosophila melanogaster]
 gi|45446626|gb|AAF56288.3| CG18528 [Drosophila melanogaster]
          Length = 493

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 168/478 (35%), Positives = 261/478 (54%), Gaps = 52/478 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGR-ILDK 63
           TI+++S+G +   +S+IR+SGP   +    I   K+  P  R+A L+ F+    + ++D+
Sbjct: 24  TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYEPKARQAYLKSFYHPASKEMIDR 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGEDS EF VHG +AV+  +L+ L K+  LR A PGEF++RAF  GK+
Sbjct: 84  GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L+ LY  W  +L    + +EA +DF+EEE 
Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  +K +I  H+S  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 204 IEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVTD  GTTRD++    +  GY V  SDTAG+R  T D +E+EG++R    +  +DLI
Sbjct: 264 VSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKNCLVQSDLI 323

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI- 361
           LLL E  +  +++    +        +    +Y  E D  +   +G+ L+ + NK  ++ 
Sbjct: 324 LLLAEAKNIAQLTHDDAV--------APFVDSYLGELDIPLDMCSGKRLQLVANKTDTLT 375

Query: 362 ---------LSN-------KFKKLPFSIPSHKRHLYHL-----------------SQTVR 388
                    LSN       K  K+P  + S ++ L  L                  Q  R
Sbjct: 376 DEEHQQLDKLSNVLAISCHKPDKMPVFLGSLEKQLQELCGEPRAENPRITNTRYRQQLER 435

Query: 389 YLEMASLNEKDCGLD------IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +E   +  +D   D      I A  LR +   + +ITG +  E +LD++F  FCIGK
Sbjct: 436 CIENIDIFLRDYRPDVYPDMAIAASKLRNSVRCIERITGHISCEDILDVVFKDFCIGK 493


>gi|195389280|ref|XP_002053305.1| GJ23413 [Drosophila virilis]
 gi|194151391|gb|EDW66825.1| GJ23413 [Drosophila virilis]
          Length = 494

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 161/482 (33%), Positives = 264/482 (54%), Gaps = 60/482 (12%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGLDGR-ILDK 63
           TI+++S+G +   +S+IR+SGP   Q    I    + +P  R+A L+ F+    + I+D+
Sbjct: 25  TIYSLSSGHVKCGVSVIRVSGPQTKQALRAIVDNGEYEPKQRQAYLKSFYHPTSKEIIDR 84

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGED+ EF VHG +AV+  +L+ L ++P LR A PGEF++RAF  GK+
Sbjct: 85  GLLLWFPGPASFTGEDACEFQVHGSLAVIAAMLDALGQLPGLRPAQPGEFTKRAFFGGKL 144

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L  LY  W  +L    + +EA +DF+EEE 
Sbjct: 145 DLTEVEGLADLIHAETEAQRKQALLQSTGALGRLYDSWRKRLIRCAAHLEAYIDFAEEEQ 204

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  +K +I +H++  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 205 IEGGVIVKLTRELNAVKQEIRAHLNDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRA 264

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVT+  GTTRD++    +  GY V  +DTAG+R+ T D +E EG+ R    + ++DLI
Sbjct: 265 VSIVTEQAGTTRDIIETMHNFGGYPVVFADTAGLRKHTTDTIEVEGMARAKQCLASSDLI 324

Query: 303 LLLKEINSKKEI----SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           LLL +  + +++    +   +ID             Y EE D      +G+ L+ + NK 
Sbjct: 325 LLLTDARALRKVENNEALTGHID------------NYLEELDIPPELCSGKRLQLVANKT 372

Query: 359 KSILSNKFKKLP------------------------------FSIP-------SHKRHLY 381
            ++ + + ++L                                 +P       +H R+  
Sbjct: 373 DTLSAEEVQRLSKLDNVLALSCHKQDNLPEFLGSLQQLLQQLCGVPQAEHPRITHTRYRQ 432

Query: 382 HLSQTVRYLEMASLNEKD---CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
            L + + ++E+   + K      + I A+ LR +   + +ITG V  E +LD++F  FCI
Sbjct: 433 QLERCIDHIEIFLRDYKPDVYPDMAIAAQQLRKSVRCIERITGHVSCEDILDVVFKDFCI 492

Query: 439 GK 440
           GK
Sbjct: 493 GK 494


>gi|326562321|gb|EGE12647.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 103P14B1]
 gi|326575525|gb|EGE25450.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 101P30B1]
          Length = 466

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 170/464 (36%), Positives = 264/464 (56%), Gaps = 37/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG + +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKNAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   + N +  + + I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIHQADVLMMVY 307

Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342
           ++ ++ + ++    +                 I +  KSDL         S  T+    L
Sbjct: 308 DVTTETDPLALADQLFCEDVTEDVGDIIRQKLILVANKSDLLVSKPVLQVSCETKSAPKL 367

Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396
             +S  TGEGL+ELI     IL+ K  F     S+ +  RHL  L++   Y   A   L 
Sbjct: 368 VYVSCETGEGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G +++AE+LR +  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 424 IYHAG-ELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466


>gi|260580092|ref|ZP_05847922.1| tRNA modification GTPase TrmE [Haemophilus influenzae RdAW]
 gi|205371770|sp|P43730|MNME_HAEIN RecName: Full=tRNA modification GTPase mnmE
 gi|260093376|gb|EEW77309.1| tRNA modification GTPase TrmE [Haemophilus influenzae RdAW]
          Length = 452

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAIDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVQLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|221640727|ref|YP_002526989.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides KD131]
 gi|221161508|gb|ACM02488.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides KD131]
          Length = 428

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 163/438 (37%), Positives = 247/438 (56%), Gaps = 14/438 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+++    + ++++RLSGP   +  +       P  R A+LR     D  +LD+ L
Sbjct: 2   DTIYALASARGKAGVAVLRLSGPRSHEAVQAFGVPLPPL-RHAALRRLTWND-EVLDEAL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +++F +  SFTGE SAE H+HG  A V+ +L  L+ +P LR A  GEF+RRA ENG++DL
Sbjct: 60  VLLFGAGASFTGETSAELHLHGSPAAVSSVLRVLSGLPGLRAAEAGEFTRRALENGRLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QRR +M   SG +     +W   L    + +EA +DF+ +EDV 
Sbjct: 120 AQVEGLADLIDAETEAQRRQAMRVFSGAIGERAERWRADLIRAAALLEATIDFA-DEDVP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EVL  I  L  D+   +   ++ E IR+G+++ I+G  NAGKS+L NALA+++ A
Sbjct: 179 VDVTPEVLTLIDGLLADLRREVDGSRIAERIRDGFEVAIVGAPNAGKSTLLNALARREAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL-ILL 304
           I ++I GTTRDV+ + +DL+G  V   DTAG+R+T D+VE  GI+R     + ADL + L
Sbjct: 239 ITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRDTSDLVESLGIERAVTRAKAADLRVFL 298

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           L +      I+     D + +  K+DL           +S  TGEG+ EL+  I   L  
Sbjct: 299 LDDSGPLHGITV--QADDLVVQGKADLRPGQGLR----LSGRTGEGVPELVAAIGERLLG 352

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITGC 422
           +         + +RH   + + +  +E   A L       ++ A++LR A  SL  + G 
Sbjct: 353 RIAG--AGSLTRERHRLAIERAIGAMESVRAELLRGQQHTELAADDLRRAIRSLDSLVGR 410

Query: 423 VDVEQLLDIIFSKFCIGK 440
           VDVE LL  IF+ FCIGK
Sbjct: 411 VDVESLLGEIFASFCIGK 428


>gi|254673772|emb|CBA09462.1| putative tRNA modification GTPase [Neisseria meningitidis alpha275]
          Length = 448

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 167/456 (36%), Positives = 255/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T +    + +IR+SG +   + E +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATASGRGGVGVIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GDGLDALKRTLLREAGWQGEGEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|121635645|ref|YP_975890.1| tRNA modification GTPase TrmE [Neisseria meningitidis FAM18]
 gi|205415783|sp|A1KW66|MNME_NEIMF RecName: Full=tRNA modification GTPase mnmE
 gi|120867351|emb|CAM11122.1| probable thiophene and furan oxidation protein [Neisseria
           meningitidis FAM18]
 gi|325131396|gb|EGC54105.1| tRNA modification GTPase TrmE [Neisseria meningitidis M6190]
 gi|325135580|gb|EGC58198.1| tRNA modification GTPase TrmE [Neisseria meningitidis M0579]
 gi|325137477|gb|EGC60063.1| tRNA modification GTPase TrmE [Neisseria meningitidis ES14902]
 gi|325141474|gb|EGC63948.1| tRNA modification GTPase TrmE [Neisseria meningitidis 961-5945]
 gi|325204937|gb|ADZ00391.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240355]
 gi|325207354|gb|ADZ02806.1| tRNA modification GTPase TrmE [Neisseria meningitidis NZ-05/33]
          Length = 448

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 167/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + E +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGVNDKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GDGLDALKRTLLREAGWQGEGEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|157144348|ref|YP_001451667.1| tRNA modification GTPase TrmE [Citrobacter koseri ATCC BAA-895]
 gi|157081553|gb|ABV11231.1| hypothetical protein CKO_00052 [Citrobacter koseri ATCC BAA-895]
          Length = 466

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 164/459 (35%), Positives = 255/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG  
Sbjct: 13  MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTA 70

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 71  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 130

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 131 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 190

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 191 EE-IDFLSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 249

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 250 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 309

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 310 RVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVRL 369

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +L+   + L     G
Sbjct: 370 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLQQGKSQLLGAWAG 428

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 429 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 466


>gi|91790726|ref|YP_551678.1| tRNA modification GTPase TrmE [Polaromonas sp. JS666]
 gi|123164107|sp|Q121L2|MNME_POLSJ RecName: Full=tRNA modification GTPase mnmE
 gi|91699951|gb|ABE46780.1| tRNA modification GTPase trmE [Polaromonas sp. JS666]
          Length = 478

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 168/481 (34%), Positives = 250/481 (51%), Gaps = 45/481 (9%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     V   IC +    PR+A+   F    G++
Sbjct: 2   LARHHDPIVAIATAPGRGAVGIVRVSGKDIAPVIAAICGRAL-APRQATYLPFRDAQGQV 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-------------MPNLRL 107
           +D+GL I FP+P S+TGED  E   HGG  V+  +L    +             +  LR+
Sbjct: 61  IDQGLAIHFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAALNPAIGQPWLAQLRV 120

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEF+ RAF N KIDL +AE++ADLI + TE   R +   MSGE S      +++L H
Sbjct: 121 AQPGEFTERAFLNDKIDLAQAEAIADLIDASTETAARSAARSMSGEFSLAVNTLLEQLIH 180

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA LDF EE D+      +    +  L+  ++  + +   G I+R G K+VI G 
Sbjct: 181 LRMLVEATLDFPEE-DIDFLQKADAQGQLSRLQATLTGVMQRATQGAILREGIKVVIAGQ 239

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL NALA  ++AIVT I GTTRD ++  + +EG  + + DTAG+RE  D VEK 
Sbjct: 240 PNAGKSSLLNALAGAELAIVTPIAGTTRDKVSELIQIEGVPLHVVDTAGLREALDEVEKI 299

Query: 288 GIKRTFLEVENADLILLLKEINSKKEI----------------------SFPKNIDFIFI 325
           G++R + E+E+AD +L L +++ +                           P+N   I +
Sbjct: 300 GVERAWAEIESADAVLFLHDLSRRDAALPAQDTINYIAADDRIARTLANKLPENTAIIDV 359

Query: 326 GTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLY 381
             KSDL S    +      LIS+ TG GL+ L  ++  ++   ++  P  +  + +RH+ 
Sbjct: 360 WNKSDLTSPAGLQQVQGGVLISAKTGAGLQTLRQRLLQVVG--WQAAPEGVFMARERHVR 417

Query: 382 HLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439
            L      L  A   L      LD++AE+LR A   L +ITG    + LL  IFS+FCIG
Sbjct: 418 ALHHVQDQLATAGRQLQAARPALDLLAEDLRQAQRQLSEITGEFTPDDLLGEIFSRFCIG 477

Query: 440 K 440
           K
Sbjct: 478 K 478


>gi|256823856|ref|YP_003147819.1| tRNA modification GTPase TrmE [Kangiella koreensis DSM 16069]
 gi|256797395|gb|ACV28051.1| tRNA modification GTPase TrmE [Kangiella koreensis DSM 16069]
          Length = 452

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 255/455 (56%), Gaps = 25/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A++T      + IIR+SG    ++ + I  K     R+A+   F    G  +D+G
Sbjct: 4   QDTIAAIATPPGRGGVGIIRVSGKDATKISQVILGKSIKV-REATYLPFLDHLGHTIDQG 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + I+F +P SFTGED  E   HGG  +++ +L+E+      R+A PGEFS RAF N K+D
Sbjct: 63  IAILFKAPNSFTGEDVLELQGHGGPVILDMLLKEVVSA-GARIARPGEFSERAFLNDKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI S +E   R +M  + GE S+   Q ++ L H+R ++EA +DF EEE +
Sbjct: 122 LAQAEAIADLIESTSEQAARSAMRSLQGEFSNKVNQLVESLIHLRIYVEAAIDFPEEE-I 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              S  +V  D+  + + I     + + G I+R G  +VI G  NAGKSSL N LA K+ 
Sbjct: 181 DFLSDGKVQTDLYAIIDAIKQLKKEAQQGSILREGMTVVIAGKPNAGKSSLLNTLAGKES 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++G  V I DTAG+RE+DD VEK GI+R + E++ AD I+L
Sbjct: 241 AIVTEIAGTTRDVLREHIHIDGLPVHIIDTAGLRESDDTVEKIGIERAWQEIDKADQIVL 300

Query: 305 LKEINSKKEISFPKNIDFIF------------IGTKSDLYSTY----TEEYDHL-ISSFT 347
           + + +   +   P  ID  F            +  K DL          EY  L +S+ T
Sbjct: 301 VADASETHQF-VPHEIDPAFTKFEQFKDKLLIVANKVDLTDQLELPDATEYKVLPLSAKT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
           G+G+EEL N +K I+  K +    S  + +RHL  + + + Y E     L     G +++
Sbjct: 360 GQGIEELKNTLKDIVGFK-QTSEGSFIARRRHLDAIERALLYCENGRQQLEVYHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A+ LR A  +L +ITG    + LL  IFS FCIGK
Sbjct: 418 ADELRQAQNALSEITGEFTADDLLGRIFSSFCIGK 452


>gi|325127365|gb|EGC50299.1| tRNA modification GTPase TrmE [Neisseria meningitidis N1568]
          Length = 448

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 167/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + E +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKT-PKPRTATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GDGLDALKRTLLREAGWQGEGEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|16272938|ref|NP_439164.1| tRNA modification GTPase TrmE [Haemophilus influenzae Rd KW20]
 gi|1574033|gb|AAC22664.1| thiophene and furan oxidation protein (thdF) [Haemophilus
           influenzae Rd KW20]
          Length = 461

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 11  KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 69

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 70  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 129

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF +EE +
Sbjct: 130 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 188

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 189 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 248

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 249 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAIDEVERIGISRAWTEIEQADRIIL 308

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 309 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 368

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 369 HDGVQLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 426

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 427 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 461


>gi|332163526|ref|YP_004300103.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318608032|emb|CBY29530.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667756|gb|ADZ44400.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861751|emb|CBX71925.1| tRNA modification GTPase mnmE [Yersinia enterocolitica W22703]
          Length = 454

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 247/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +   V + +  K  P PR A    F  +DG  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAAATVAQAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 64  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQADRVLFM 302

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348
            +  +                 P  +    +  K+D+       TE   H    +S+ TG
Sbjct: 303 VDGTTTDATEPATIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L N +K  +            + +RHL  L    ++L      L     G +++A
Sbjct: 363 EGIDLLRNHLKQSMGFT-SNTEGGFLARRRHLQALETAAQHLAQGHEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|227354815|ref|ZP_03839232.1| tRNA modification GTPase [Proteus mirabilis ATCC 29906]
 gi|227165133|gb|EEI49964.1| tRNA modification GTPase [Proteus mirabilis ATCC 29906]
          Length = 454

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 173/462 (37%), Positives = 256/462 (55%), Gaps = 33/462 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H  +TI A +T      + I+R+SGP    V + I  K  P PR A    F   D  +LD
Sbjct: 2   HSTDTIVAQATPPGRGGVGILRVSGPKAAVVAQTILGKV-PKPRYADYLPFRNEDNSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP+P SFTGED  E   HGG  +++ +L+ + ++P +R+A PGEFS RAF N K
Sbjct: 61  QGIALFFPNPNSFTGEDVLELQGHGGPIILDLLLKRILQIPGIRIAKPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  SS   + ++ LT++R ++EA +DF +EE
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAINSLQGAFSSHINEMVESLTNLRIYVEAAIDFPDEE 180

Query: 183 DVQNFSSKEV----LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
              +F S  V    LN ++   +D+ +   QG L   +R G K+VI G  NAGKSSL NA
Sbjct: 181 --IDFLSDGVIEGKLNTVISQLDDVRAQARQGSL---LREGMKVVIAGRPNAGKSSLLNA 235

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E 
Sbjct: 236 LAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 295

Query: 299 ADLILLLKE-----------INSKKEISFPKNIDFIFIGTKSDLYSTYTE-----EYDHL 342
           AD +L + +           I  +     P  +    I  KSDL     E     +Y  +
Sbjct: 296 ADRVLFMVDSTTTEATTPEEIWPEFMARLPSTLPVTVIRNKSDLTGEPAEITSQGDYPMI 355

Query: 343 -ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398
            +S+  G G+E L + +K  +  N   +  F   + +RHL  L+    +L+     L   
Sbjct: 356 RLSARDGMGIELLRSHLKEAMGFNSNTEGGFL--ARRRHLQALNTAAEHLQQGYQQLVYA 413

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             G +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 414 KSG-ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|170026449|ref|YP_001722954.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis YPIII]
 gi|205829188|sp|B1JRQ1|MNME_YERPY RecName: Full=tRNA modification GTPase mnmE
 gi|169752983|gb|ACA70501.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis YPIII]
          Length = 454

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 249/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +  +V   +  K  P PR A    F  +DG  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 64  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE +D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADRVLFM 302

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348
            +  +                 P  +    +  K+D+       TE   H    +S+ TG
Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L + +K  +            + +RHL  L    R+L      L     G +++A
Sbjct: 363 EGIDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALETAARHLIQGHEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|123444347|ref|YP_001008312.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166234832|sp|A1JT87|MNME_YERE8 RecName: Full=tRNA modification GTPase mnmE
 gi|122091308|emb|CAL14194.1| putative thiophene and furan oxidation protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 454

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 247/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +   V + +  K  P PR A    F  +DG  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAAATVAQAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 64  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQADRVLFM 302

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348
            +  +                 P  +    +  K+D+       TE   H    +S+ TG
Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L N +K  +            + +RHL  L    ++L      L     G +++A
Sbjct: 363 EGIDLLRNHLKQSMGFT-SNTEGGFLARRRHLQALETAAQHLAQGHEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|309973499|gb|ADO96700.1| tRNA modification GTPase mnmE [Haemophilus influenzae R2846]
          Length = 461

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 11  KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 69

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 70  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 129

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S      +D + ++R+++EA +DF +EE +
Sbjct: 130 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNTLVDSVIYLRTYVEASIDFPDEE-I 188

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 189 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 248

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 249 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 308

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 309 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 368

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 369 HDGVKLLREHLKQAMGFQ-AGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 426

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 427 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 461


>gi|326571730|gb|EGE21743.1| tRNA modification GTPase TrmE [Moraxella catarrhalis BC8]
 gi|326574355|gb|EGE24298.1| tRNA modification GTPase TrmE [Moraxella catarrhalis CO72]
          Length = 466

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 170/464 (36%), Positives = 263/464 (56%), Gaps = 37/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG   +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   + N +  + + I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307

Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342
           ++ ++ + ++    +                 I +  KSDL         S  T+    L
Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLISKPVLQVSCETKSAPKL 367

Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396
             +S  TGEGL+ELI     IL+ K  F     S+ +  RHL  L++   Y   A   L 
Sbjct: 368 VYVSCETGEGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G +++AE+LR +  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 424 IYHAG-ELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466


>gi|197286945|ref|YP_002152817.1| tRNA modification GTPase TrmE [Proteus mirabilis HI4320]
 gi|254811490|sp|B4F0U0|MNME_PROMH RecName: Full=tRNA modification GTPase mnmE
 gi|194684432|emb|CAR46143.1| probable tRNA modification GTPase [Proteus mirabilis HI4320]
          Length = 454

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 173/462 (37%), Positives = 256/462 (55%), Gaps = 33/462 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H  +TI A +T      + I+R+SGP    V + I  K  P PR A    F   D  +LD
Sbjct: 2   HSTDTIVAQATPPGRGGVGILRVSGPKAAVVAQTILGKV-PKPRYADYLPFRNEDNSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP+P SFTGED  E   HGG  +++ +L+ + ++P +R+A PGEFS RAF N K
Sbjct: 61  QGIALFFPNPNSFTGEDVLELQGHGGPIILDLLLKRILQIPGIRIAKPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  SS   + ++ LT++R ++EA +DF +EE
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAINSLQGAFSSHINEMVESLTNLRIYVEAAIDFPDEE 180

Query: 183 DVQNFSSKEV----LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
              +F S  V    LN ++   +D+ +   QG L   +R G K+VI G  NAGKSSL NA
Sbjct: 181 --IDFLSDGVIEGKLNTVISQLDDVRTQARQGSL---LREGMKVVIAGRPNAGKSSLLNA 235

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E 
Sbjct: 236 LAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 295

Query: 299 ADLILLLKE-----------INSKKEISFPKNIDFIFIGTKSDLYSTYTE-----EYDHL 342
           AD +L + +           I  +     P  +    I  KSDL     E     +Y  +
Sbjct: 296 ADRVLFMVDSTTTEATTPEEIWPEFMARLPSTLPVTVIRNKSDLTGEPAEITSQGDYPMI 355

Query: 343 -ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398
            +S+  G G+E L + +K  +  N   +  F   + +RHL  L+    +L+     L   
Sbjct: 356 RLSARDGMGIELLRSHLKEAMGFNSNTEGGFL--ARRRHLQALNTAAEHLQQGYQQLVYA 413

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             G +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 414 KSG-ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|92115738|ref|YP_575467.1| tRNA modification GTPase TrmE [Nitrobacter hamburgensis X14]
 gi|123265484|sp|Q1QRZ0|MNME_NITHX RecName: Full=tRNA modification GTPase mnmE
 gi|91798632|gb|ABE61007.1| tRNA modification GTPase trmE [Nitrobacter hamburgensis X14]
          Length = 457

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 162/460 (35%), Positives = 252/460 (54%), Gaps = 23/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  ++TIFA+S+G  PSAI+++R+SG       + I     P  R A       L G  
Sbjct: 1   MHPREQTIFALSSGRPPSAIAVVRVSGAEAGTALQEIAGAI-PVVRTAKRVLLRDLLGEA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ F  P S TGED AEFHVHG  AV+N +   L+ + ++R A PGEF+RRAFEN
Sbjct: 60  IDDAIVLWFAGPASATGEDVAEFHVHGSRAVLNALFAALSSIDHVRPAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL EAE L DLI ++T+ QRR ++  + G L     +W  +L    + IEA +DF++
Sbjct: 120 GKIDLTEAEGLDDLIHADTDRQRRQALRQLQGLLGDRAREWRRELIEASALIEAGIDFAD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV +   K  +  I  L+ +I   ++     E +R+G  + I G  NAGKS+L N LA
Sbjct: 180 EGDVPDDLLKPAMEKIARLRREIEETLAASAQSERLRDGMTVAIAGPPNAGKSTLLNRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIV+   GTTRDV+ + LDL+GY V + DTAGIRETDD VE+EG++R      +AD
Sbjct: 240 RREAAIVSPYAGTTRDVIEVHLDLDGYPVTLIDTAGIRETDDPVEQEGVRRARDRAASAD 299

Query: 301 LILLLKE----INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH--------------- 341
           L+L L +    +   + I     +    +  K D+    ++  +                
Sbjct: 300 LVLWLADDDNGVGPSQTIG-EGGVPLWLVRNKIDVSGAESDGANPRQLEAKPGQGILPRH 358

Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
             IS+  G+G++EL+  + +     F     ++ +  RH  ++ Q        +      
Sbjct: 359 FWISASRGDGVDELVAALTAFSDGWFGSGETAVITRLRH-RNILQDAAASLAKAEALIGQ 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G +++AE +R+A   +G++ G VD++ +LD +F  FCIGK
Sbjct: 418 GDELVAEEIRIAVRLIGRLLGRVDIDDILDSLFHDFCIGK 457


>gi|240127321|ref|ZP_04739982.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae SK-93-1035]
 gi|268685687|ref|ZP_06152549.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268625971|gb|EEZ58371.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 448

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 255/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PEPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAALDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K  +   + P ++  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GDGLDALKRTLLCEAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|148828171|ref|YP_001292924.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittGG]
 gi|166200481|sp|A5UID5|MNME_HAEIG RecName: Full=tRNA modification GTPase mnmE
 gi|148719413|gb|ABR00541.1| tRNA modification GTPase [Haemophilus influenzae PittGG]
          Length = 452

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 166/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATEVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKFD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    ++ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRSIINQLEDVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESVDLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQSGYQMISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|326561737|gb|EGE12072.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 7169]
          Length = 466

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 170/464 (36%), Positives = 263/464 (56%), Gaps = 37/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG   +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   + N +  + + I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307

Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342
           ++ ++ + ++    +                 I +  KSDL         S  T+    L
Sbjct: 308 DLTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLVSKPVLQVSCETKSVPKL 367

Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396
             +S  TGEGL+ELI     IL+ K  F     S+ +  RHL  L++   Y   A   L 
Sbjct: 368 VYVSCETGEGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G +++AE+LR +  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 424 IYHAG-ELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466


>gi|145632387|ref|ZP_01788122.1| tRNA modification GTPase [Haemophilus influenzae 3655]
 gi|144987294|gb|EDJ93824.1| tRNA modification GTPase [Haemophilus influenzae 3655]
          Length = 452

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAIDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|15677815|ref|NP_274979.1| tRNA modification GTPase TrmE [Neisseria meningitidis MC58]
 gi|14195279|sp|Q9JXL4|MNME_NEIMB RecName: Full=tRNA modification GTPase mnmE
 gi|7227248|gb|AAF42314.1| thiophene and furan oxidation protein ThdF [Neisseria meningitidis
           MC58]
 gi|316985629|gb|EFV64576.1| tRNA modification GTPase TrmE [Neisseria meningitidis H44/76]
 gi|325139307|gb|EGC61848.1| tRNA modification GTPase TrmE [Neisseria meningitidis CU385]
 gi|325143695|gb|EGC66014.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240013]
 gi|325201035|gb|ADY96490.1| tRNA modification GTPase TrmE [Neisseria meningitidis H44/76]
 gi|325206892|gb|ADZ02345.1| tRNA modification GTPase TrmE [Neisseria meningitidis M04-240196]
          Length = 448

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PKPRTATYADFTDTDGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GDGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|319897487|ref|YP_004135684.1| tRNA modification gtpase mnme [Haemophilus influenzae F3031]
 gi|317432993|emb|CBY81364.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3031]
          Length = 452

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IVLYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                 ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLVDGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAIDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVQLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|283787594|ref|YP_003367459.1| tRNA modification GTPase [Citrobacter rodentium ICC168]
 gi|282951048|emb|CBG90726.1| probable tRNA modification GTPase [Citrobacter rodentium ICC168]
          Length = 454

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 165/462 (35%), Positives = 257/462 (55%), Gaps = 30/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKL-PRPRYADYLPFKDADGAA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           EE +   S  ++   LN+++    D+ +  ++ + G ++R G K+VI G  NAGKSSL N
Sbjct: 179 EE-IDFLSDGKIEAQLNEVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLN 234

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           ALA ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E
Sbjct: 235 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIE 294

Query: 298 NADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH-- 341
            AD +L + +  +   +             P  +    +  K+D+       +E   H  
Sbjct: 295 QADRVLFMVDGTTTDAVDPVEIWPDFIARLPAKLPITVVRNKADITGEALGISEVNGHSL 354

Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEK 398
             +S+ TGEG++ L N +K  +      +     + +RHL  L++   +L+     L   
Sbjct: 355 VRLSARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLQQGKGQLLGA 413

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             G +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 414 WAG-ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|238897217|ref|YP_002921965.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae NTUH-K2044]
 gi|330005209|ref|ZP_08305168.1| tRNA modification GTPase TrmE [Klebsiella sp. MS 92-3]
 gi|238549547|dbj|BAH65898.1| tRNA modification GTPase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328536341|gb|EGF62703.1| tRNA modification GTPase TrmE [Klebsiella sp. MS 92-3]
          Length = 454

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 164/459 (35%), Positives = 254/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKL-PKPRYADYLPFNDVDGTP 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNEVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D VE+ GI+R + E+  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIAQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTGAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGISEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG+E L N +K  +      +     + +RHL  L +   +L+   A L     G
Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|157368276|ref|YP_001476265.1| tRNA modification GTPase TrmE [Serratia proteamaculans 568]
 gi|166991115|sp|A8G7P7|MNME_SERP5 RecName: Full=tRNA modification GTPase mnmE
 gi|157320040|gb|ABV39137.1| tRNA modification GTPase TrmE [Serratia proteamaculans 568]
          Length = 454

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 166/454 (36%), Positives = 249/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG     V + +  K  P PR A    F    G  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRISGRGAKDVAQALLGKL-PKPRYADYLPFRDAAGATLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL
Sbjct: 64  ALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGMRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M  + G  S+   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSTRIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+ S  ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEAQLNGVMADLDSVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFM 302

Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348
                       EI  +     P  +    +  K+D+       TE   H    +S+ TG
Sbjct: 303 VDGTTTAATEPAEIWPEFMARLPHRLPITVVRNKADITGETLGMTEVNGHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L + +K  +      +     + +RHL  L Q  ++L      L     G +++A
Sbjct: 363 EGIDLLRDHLKQSMGFT-SNMEGGFLARRRHLQALEQAAQHLVEGKEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|260428910|ref|ZP_05782887.1| tRNA modification GTPase TrmE [Citreicella sp. SE45]
 gi|260419533|gb|EEX12786.1| tRNA modification GTPase TrmE [Citreicella sp. SE45]
          Length = 427

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 163/445 (36%), Positives = 245/445 (55%), Gaps = 29/445 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    + +++IR+SGP  ++    +     P PR+ ++R      G +LD+ L
Sbjct: 2   DTIFALASAPGKAGVAVIRVSGPLAWEAGVRLAGSL-PEPRRTAVRVLRDRQGGVLDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP   SFTGE   EF +HG  A++  +L EL  +  LR+A PGEF+RRA EN ++DL
Sbjct: 61  VLAFPDGASFTGERVVEFQIHGSQAILRAVLRELDAVDGLRMAEPGEFTRRALENDRLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182
            + E+LADLI SETE QR  ++   SG L      W   L    S +E  +DF++EE   
Sbjct: 121 TQVEALADLIESETESQRVQALRVFSGALGQKVDGWRRDLIQAASLLEVTIDFADEEVPV 180

Query: 183 ----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
               DV  F  +  L         + + +      E IR+G+++ I+G  N GKSSL NA
Sbjct: 181 DVSDDVSGFLDRVTLA--------LEAELRGLDAAERIRSGFEVAIVGAPNVGKSSLLNA 232

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L+ +D AI ++I GTTRDV+ + +++ G  V + DTAG+RET D VEK GI R       
Sbjct: 233 LSGRDAAITSEIAGTTRDVIEVRMEIAGLPVTLLDTAGLRETQDPVEKIGIARALDRART 292

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           +DL ++L +     EI+ P   D I +G+K+DL       + + +S+ TG+G++ L+ +I
Sbjct: 293 SDLRVILVDDRGLPEIT-PVAGD-IVVGSKADLTG-----HANGLSAVTGQGVDWLVREI 345

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNEKDCGLDIIAENLRLASVS 415
              LS + +     + + +RH     Q    L  A        DC  D+ AE +R A  S
Sbjct: 346 GERLSERVQS--AGLATRERHRVAFEQGKTSLGAAKDLLTRGPDC-YDLAAEEIRSAIRS 402

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           L  + G VDVE LLD IFS FC+GK
Sbjct: 403 LELLIGRVDVENLLDEIFSSFCLGK 427


>gi|114769773|ref|ZP_01447383.1| tRNA modification GTPase [alpha proteobacterium HTCC2255]
 gi|114549478|gb|EAU52360.1| tRNA modification GTPase [alpha proteobacterium HTCC2255]
          Length = 432

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 169/447 (37%), Positives = 252/447 (56%), Gaps = 29/447 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           + IFA+++    + +S+IR+SG +     E I +K      K  LR  +  +  ++D+ L
Sbjct: 3   DIIFALASAKGRAGVSVIRISGDNSITSVEKILRKNLSSNNKC-LRKIYDSNNSVIDEVL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F    SFTG+++ E H HG IAVV+ IL  L+ + N R+A PGEF+R+A ENG +DL
Sbjct: 62  ILTFKKSASFTGDETVEIHCHGSIAVVSHILRTLSSLENFRIAEPGEFTRKALENGNLDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++ E LADLI SETE QRRL++  M G LS     W   L    S IEA +DF+ +ED+ 
Sbjct: 122 IQVEGLADLIESETEAQRRLAVRSMDGALSKKVQIWRKDLIRAVSLIEATIDFA-DEDIP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EVL+ I   + +I S I      E IR G+++ I+G  N GKS+L NALA +D A
Sbjct: 181 TDVTPEVLDLINKTQIEIKSEIDGSFAAERIREGFEVAIVGPPNIGKSTLLNALAGRDAA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +D+ GTTRDV+ + +D+ G+ V + DTAG+RET D VEK G++      +NAD+ + +
Sbjct: 241 ITSDVAGTTRDVIEVKMDINGFAVTLLDTAGLRETTDKVEKIGVELAKTRAKNADIRVFI 300

Query: 306 KEINSKKEISF-PKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILS 363
               +  E+   P+  D I IG KSDL     ++ D L IS  +GEGL+ L+  I  IL 
Sbjct: 301 THDGTVNELKLKPELNDIIVIG-KSDLL----DKTDILSISGKSGEGLDSLLKIISDILE 355

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV--------- 414
           +    +     + +RH   + +  +YL        D G  ++ ++L L+           
Sbjct: 356 DLC--VGAQTATRERHRVAMVKAQKYL--------DEGKALMVDSLELSEFASSEFHQGI 405

Query: 415 -SLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  + G V VE LLD IFS FC+GK
Sbjct: 406 QTLSSLIGSVGVEDLLDEIFSSFCLGK 432


>gi|309378889|emb|CBX22476.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 448

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGVNDKTRAILDALPSELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GDGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|325133445|gb|EGC56109.1| tRNA modification GTPase TrmE [Neisseria meningitidis M13399]
          Length = 448

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 167/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + E +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GDGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|57238770|ref|YP_179906.1| tRNA modification GTPase TrmE [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578693|ref|YP_196905.1| tRNA modification GTPase TrmE [Ehrlichia ruminantium str.
           Welgevonden]
 gi|81819295|sp|Q5HCD7|MNME_EHRRW RecName: Full=tRNA modification GTPase mnmE
 gi|57160849|emb|CAH57749.1| putative tRNA modification GTPase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417319|emb|CAI26523.1| tRNA modification GTPase [Ehrlichia ruminantium str. Welgevonden]
          Length = 439

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 171/453 (37%), Positives = 254/453 (56%), Gaps = 35/453 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+ T    S +++IR+SG    +            PR A+    +     ++D+ ++
Sbjct: 3   TIFALCTPWGKSGVAVIRVSGQDAVKTFMHFKISNAIKPRVATFTPLYNAAHEVIDEVIV 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F +P SFTGED  E H HG IAV+  IL EL K+     A PGEFS RAF N K+DL 
Sbjct: 63  VYFSAPNSFTGEDVVELHTHGSIAVIRMILCELGKI--FIPAGPGEFSLRAFLNNKVDLT 120

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
            AE++ DLI++ETEMQ + ++  MSG L  LY  W  +L  + S +EA +DF EE     
Sbjct: 121 RAEAIVDLINAETEMQAKQAIRQMSGSLEKLYQSWRQQLIDVLSNMEAYIDFPEE----- 175

Query: 187 FSSKEVLNDILFL----KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
             +   + +I FL    K  + +H++ G+ GEI+R G  + ILG  N+GKS+LFN LAK+
Sbjct: 176 -VTSSAVENISFLLDKIKESLENHLNDGRKGEILRQGIYVAILGEPNSGKSTLFNHLAKR 234

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD-- 300
           D+AIV++  GTTRDVL   +D+ GY + I DTAGIR+++D VE+EGI+R  L+ E+AD  
Sbjct: 235 DIAIVSEYAGTTRDVLETHIDIAGYPIVIIDTAGIRDSNDPVEQEGIRRAKLKAESADFK 294

Query: 301 LILLLKEINSKKEISFPKNIDF-----IFIGTKSD-----LYSTYTEEYDHLISSFTGEG 350
           +I+L  E   KK+    + ID      I + +KSD                 +S     G
Sbjct: 295 IIMLPYE---KKDALNNEIIDLIDDRSICVLSKSDSIITQNLININNINFIPVSVCCNLG 351

Query: 351 LEELINKIKSILSNKFK---KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           +E L++ I+  +   FK     PF   + +R   H+   V  L+  S    +  +++I+E
Sbjct: 352 IEHLLSAIQKKVEADFKFCSTSPFI--TSERQRVHIQNAVNILKNISF---ELPMELISE 406

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRL+   L K+ G +  E++LD +F KFCIGK
Sbjct: 407 DLRLSVRELEKVVGVISNEEILDNVFGKFCIGK 439


>gi|153949187|ref|YP_001403100.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP
           31758]
 gi|166991119|sp|A7FPC2|MNME_YERP3 RecName: Full=tRNA modification GTPase mnmE
 gi|152960682|gb|ABS48143.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP
           31758]
          Length = 454

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 248/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +  +V   +  K  P PR A    F  +DG  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 64  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + + G  + I DTAG+RE +D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHINGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADRVLFM 302

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348
            +  +                 P  +    +  K+D+       TE   H    +S+ TG
Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L + +K  +            + +RHL  L    R+L      L     G +++A
Sbjct: 363 EGIDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALETAARHLIQGHEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|261378121|ref|ZP_05982694.1| tRNA modification GTPase TrmE [Neisseria cinerea ATCC 14685]
 gi|269145579|gb|EEZ71997.1| tRNA modification GTPase TrmE [Neisseria cinerea ATCC 14685]
          Length = 448

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 169/456 (37%), Positives = 260/456 (57%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+ +  TI AV+T      + ++R+SG +   + + +C K  P PR A+   F  ++G  
Sbjct: 1   MSDKDSTIAAVATAPGRGGVGVVRVSGKNLLPMAQALCGKT-PLPRVATYADFKDVNGEA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDNGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      +D L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRTAARLALRSLKGDFSRRIHGLVDDLVTLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLEGLRRSVDEVLANARQGAILREGMNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYS----TYTEEYDHLI--SSFT 347
           + L+L +    +N K  +   + P ++  I I +KSDL++     +    D +I  S+ T
Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHTGAAVAFETGADTVIPLSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G GL+ L   +   +  + +     + +  RHL  L      LE+A+L    CG   +++
Sbjct: 358 GAGLDVLRQTLLREVGWQGEGEGLFL-ARARHLNALKAAQGELELAAL----CGNGQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 LAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|229843939|ref|ZP_04464080.1| tRNA modification GTPase TrmE [Haemophilus influenzae 6P18H1]
 gi|229812933|gb|EEP48621.1| tRNA modification GTPase TrmE [Haemophilus influenzae 6P18H1]
          Length = 452

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S      +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQ-AGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|109900608|ref|YP_663863.1| tRNA modification GTPase TrmE [Pseudoalteromonas atlantica T6c]
 gi|123170439|sp|Q15MS9|MNME_PSEA6 RecName: Full=tRNA modification GTPase mnmE
 gi|109702889|gb|ABG42809.1| tRNA modification GTPase trmE [Pseudoalteromonas atlantica T6c]
          Length = 460

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 166/459 (36%), Positives = 254/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           +++TI A +T +    + I+R+SG    +V E I     P  R A    F    G  LD+
Sbjct: 9   DQDTIVAQATASGRGGVGIVRVSGSLAAKVAEQIIGHV-PLIRNAQYVPFKSNTGEPLDQ 67

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F +P SFTGED  E   HGG  V++ +++    +PN+RLA PGEFS RA+ N K+
Sbjct: 68  GIALFFKAPHSFTGEDVLELQGHGGQVVLDMLIKATLHVPNVRLARPGEFSERAYLNDKL 127

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + GE S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 128 DLAQAEAIADLIDASSEQAARGALRSLQGEFSTQINSLVELLTHLRIYVEAAIDFPDEE- 186

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  +V ND+  +   +SS  SQ + G ++R G ++VI G  NAGKSSL NALA +D
Sbjct: 187 IDFLSDGKVQNDLKAITKQLSSVKSQARQGSLLREGMRVVIAGRPNAGKSSLLNALAGRD 246

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT I GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI+R + E+E AD +L
Sbjct: 247 AAIVTAIAGTTRDVLKEHIHIDGMPLHIIDTAGLRDSSDEVERIGIERAWQEIEQADRVL 306

Query: 304 LLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTE--EYDHL----ISSF 346
            + +     E              PKN+    I  K+DL        +YD      +S+ 
Sbjct: 307 FMLDSTETHENDPYKIWPEFMRRLPKNMGLTVIRNKADLSGENVGKVQYDDYPVFQLSAS 366

Query: 347 TGEGLEELINKIKSIL----SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
             +G+E L   +K  +    SN+ + +     + +RH+  + +   +L +     E +  
Sbjct: 367 HKQGIEVLAEHLKECMGFHSSNEGQFI-----ARRRHIDAIERAEEHLLLGKQQLEDNLA 421

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 422 GELLAEELRLAQAYLSEITGEFSSDDLLGKIFSSFCIGK 460


>gi|326560694|gb|EGE11062.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 46P47B1]
          Length = 466

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 170/464 (36%), Positives = 263/464 (56%), Gaps = 37/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG   +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   + N +  + + I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLVLNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLIMVY 307

Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342
           ++ ++ + ++    +                 I +  KSDL         S  T+    L
Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLISKPVLQVSCETKSAPKL 367

Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396
             +S  TGEGL+ELI     IL+ K  F     S+ +  RHL  L++   Y   A   L 
Sbjct: 368 VYVSCETGEGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G +++AE+LR +  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 424 IYHAG-ELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466


>gi|56461736|ref|YP_157017.1| tRNA modification GTPase TrmE [Idiomarina loihiensis L2TR]
 gi|81821749|sp|Q5QZJ5|MNME_IDILO RecName: Full=tRNA modification GTPase mnmE
 gi|56180746|gb|AAV83468.1| ThdF [Idiomarina loihiensis L2TR]
          Length = 458

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 167/454 (36%), Positives = 255/454 (56%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +C +V E +     P PRKA    F+ L  ++LD+G+
Sbjct: 9   DTIVAQATPPGRGGVGIVRVSGKACKEVAEKLLGHC-PKPRKAEYLPFYDLQEQLLDEGI 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ I+  + ++P +R A PGEFS RAF N K+DL
Sbjct: 68  ALFFPGPNSFTGEDVLELQGHGGPVIIDMIIRAILEIPGIRPARPGEFSERAFLNDKLDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S    Q +D + H+R ++EA +DF +EE + 
Sbjct: 128 TQAEAIADLIDTNSEQAAKAALQSLKGEFSHKIDQLVDAVIHLRIYVEAAIDFPDEE-ID 186

Query: 186 NFSSKEVLNDILFLKNDISSHISQ-GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             S  +V  D+  + + +  HI Q  K G ++R G +IVI G  NAGKSSL NALA ++ 
Sbjct: 187 FLSDGKVSGDLAEIIDQL-FHIEQEAKQGTLMREGMRIVIAGRPNAGKSSLLNALAGRES 245

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++   + I DTAG+RE+ D VEK GI+R + E+  AD +L 
Sbjct: 246 AIVTEIAGTTRDVLREHIQIDSMPLHIIDTAGLRESPDHVEKIGIERAWDEIRQADRVLF 305

Query: 305 LKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFT 347
           + +      I             P+++ +  I  K DL    T  +E++++    +S+ T
Sbjct: 306 MVDSQETSAIHPDDIWPEFFAQLPEDMPYTVIRNKVDLSEEPTGIDEHNNIPVIHLSAKT 365

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDCGLDIIA 406
           G G+E L   +K  +         S  + +RHL  L++  V  L+     E +   +I+A
Sbjct: 366 GHGIELLREHLKHCVGYSATS-EGSFMARRRHLEALAKAKVHLLQGLEQLEANMAGEILA 424

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRL    L +ITG    + LL  IF  FCIGK
Sbjct: 425 EELRLTQQHLNEITGEFTSDDLLGQIFGSFCIGK 458


>gi|326563099|gb|EGE13372.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 12P80B1]
          Length = 466

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 170/464 (36%), Positives = 263/464 (56%), Gaps = 37/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG   +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   + N +  + + I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLIMVY 307

Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342
           ++ ++ + ++    +                 I +  KSDL         S  T+    L
Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLISKPVLQVSCETKSAPKL 367

Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396
             +S  TGEGL+ELI     IL+ K  F     S+ +  RHL  L++   Y   A   L 
Sbjct: 368 VYVSCETGEGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G +++AE+LR +  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 424 IYHAG-ELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466


>gi|117619237|ref|YP_858697.1| tRNA modification GTPase TrmE [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|166200466|sp|A0KQZ6|MNME_AERHH RecName: Full=tRNA modification GTPase mnmE
 gi|117560644|gb|ABK37592.1| tRNA modification GTPase TrmE [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 453

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 168/453 (37%), Positives = 249/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SGP+  QV E +  K  P  R A    F    G+ LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIVRVSGPAAEQVAEIVLGKL-PRVRYAEYLPFRDEQGQPLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            ++F +P SFTGED  E   HGG  +++ ++  + ++  LR A PGEFS RAF N K+DL
Sbjct: 63  ALLFKAPNSFTGEDVLELQGHGGPVIMDMLVRRILQIKGLRPARPGEFSERAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M  + G+ S    Q ++ LT +R ++EA +DF +EE + 
Sbjct: 123 AQAEAIADLIEASSEQAARSAMHSLQGQFSGKIQQLVESLTRLRIYVEAAIDFPDEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  +V  D+  +  ++     + K G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 182 FLSDGKVAGDLYAIMAELDDVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGRESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+E AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDKVEQIGIERAWAEIEQADRVLFM 301

Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHL---ISSFTG 348
                      +EI  +     PK I    +  K+DL       ++E  H    IS+ T 
Sbjct: 302 VDGTTTAAVDPREIWPEFVDRLPKKIGLTVVRNKADLTGEDLAPSQELGHAVYRISAKTE 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            GL  L   +K+ +  +         + +RHL  L +    L +A    E     +++AE
Sbjct: 362 LGLSALREHLKACMGFQ-GNTEGGFMARRRHLDALERAAERLLVAKEQLEVFVAGELVAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453


>gi|242241426|ref|YP_002989607.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech703]
 gi|242133483|gb|ACS87785.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech703]
          Length = 453

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 258/462 (55%), Gaps = 31/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG +   V + +  K  P PR A    F   DG +
Sbjct: 1   MSH-SDTIVAQATPPGRGGVGILRISGAAAAAVAQAVLGKL-PRPRHADYLPFRDTDGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP+P SFTGED  E   HGG  +++ +L+ +   P++R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPAPNSFTGEDVLELQGHGGPVILDLLLKRILAQPDVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSTHVHQLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           EE +   S  ++   LND++    ++ +  +Q + G ++R G K+VI G  NAGKSSL N
Sbjct: 179 EE-IDFLSDGKIEAQLNDVI---ANLDAVRAQARQGSLLREGMKVVIAGRPNAGKSSLLN 234

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           ALA +D AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E
Sbjct: 235 ALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 294

Query: 298 NADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY--TEEYDHL-- 342
            AD +L + +  +   +             P  +    I  K+D        E+  H   
Sbjct: 295 QADRVLFMVDGTTTDAVEPSAIWPEFMARLPATLPITVIRNKADTTGEPLGMEQNTHTLI 354

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            +S+ TG G++ L + +K  +            + +RHL  L Q   +L+    +E+  G
Sbjct: 355 RLSARTGAGVDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALEQAAEHLQQG--HEQLVG 411

Query: 402 L---DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 412 AYAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 453


>gi|53802851|ref|YP_115425.1| tRNA modification GTPase TrmE [Methylococcus capsulatus str. Bath]
 gi|81823572|sp|Q602M5|MNME_METCA RecName: Full=tRNA modification GTPase mnmE
 gi|53756612|gb|AAU90903.1| tRNA modification GTPase TrmE [Methylococcus capsulatus str. Bath]
          Length = 448

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 168/449 (37%), Positives = 256/449 (57%), Gaps = 17/449 (3%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           +++TI A++T      + I+R+SG +   V + +  +  P PR A  R+F   DGR +D 
Sbjct: 5   DRDTITAIATPPGKGGVGIVRISGSNLGPVLDALLGRP-PRPRYAEFRHFLDADGRAIDS 63

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGE+  E H HGG  V++ +L    ++   RLA PGEFS RA+ NGK+
Sbjct: 64  GIALYFPAPRSFTGENVLELHGHGGPVVLDLLLRRTLQL-GCRLARPGEFSERAYLNGKL 122

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI S TE   R +   + GE S+      + L  +R+++EA +DFS+E D
Sbjct: 123 DLAQAEAIADLIDSSTEESARSAQRSLQGEFSAHIHHLQECLVRLRTYVEAAIDFSDE-D 181

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +       + ++I  L +++ +  ++   G ++R G   VI G  N GKSSL NALA +D
Sbjct: 182 IDLLDDATLGHEITGLLDELDTIDTKAHQGALLREGLTTVIAGRPNVGKSSLLNALAGRD 241

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIVT+IPGTTRD+L   L + G  + I DTAG+R+++D +E+EGI+R    + NAD IL
Sbjct: 242 LAIVTEIPGTTRDLLRESLQVGGLPLHIVDTAGLRDSEDPIEREGIRRARDALANADCIL 301

Query: 304 LL-----KEINSKKEISFPKNIDFIFIGTKSDLY---STYTEEYDHLI---SSFTGEGLE 352
           L+      E         P+ I  I I  K DL    ++ T E +  +   S+ TGEG++
Sbjct: 302 LVCDARHTEAGDALPADLPETIPLIRIFNKIDLTGAPASLTVERETTVIHLSARTGEGVD 361

Query: 353 ELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            L  +I  I    +KK    +  + +RHL  + +    +  A L       +++AE LR 
Sbjct: 362 LLRQEI--IRRAGYKKGTEGVFSARRRHLDAIRRARAAVANARLYLHTKTAELLAEELRA 419

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG    E LL+ IFS FC+GK
Sbjct: 420 AQKALGEITGEFTNEDLLNRIFSSFCLGK 448


>gi|30248403|ref|NP_840473.1| tRNA modification GTPase TrmE [Nitrosomonas europaea ATCC 19718]
 gi|46577435|sp|Q82XA1|MNME_NITEU RecName: Full=tRNA modification GTPase mnmE
 gi|30138289|emb|CAD84297.1| GTP-binding protein (HSR1-related):tRNA modification GTPase TrmE
           [Nitrosomonas europaea ATCC 19718]
          Length = 451

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 171/455 (37%), Positives = 252/455 (55%), Gaps = 28/455 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      I I+R+SG +   +   I  K  P PR A L  F   + +I+D+G+
Sbjct: 5   DTIAAIATPPGRGGIGIVRISGTNLESLARGILGKL-PDPRHAGLFSFLDQNSQIIDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FPSP S+TGE+  E   HGG AV+N +L+   ++   RLA PGEF+ RAF N K+DL
Sbjct: 64  ALYFPSPHSYTGEEVLELQGHGGPAVMNLLLDRCLQL-GARLAEPGEFTLRAFLNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE +ADLI++ T    R ++  + GE SS   Q +  L  +R  +EA LDF EEE + 
Sbjct: 123 AQAEGVADLIAASTANAARCAVRSLHGEFSSTIHQLVSALIDLRVLVEATLDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S      +  ++  +   +   + G +++ G K+V+ G  N GKSSL N LA  +VA
Sbjct: 182 FLQSAHAAEQLATIRAKLEQVLVASRQGNLLQEGIKVVLAGQPNVGKSSLLNRLAGDEVA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDIPGTTRD +   +++EG  + + DTAG+RET DIVE+ GI RT+  +E ADL+LLL
Sbjct: 242 IVTDIPGTTRDTVRQSIEIEGIPLHLIDTAGLRETSDIVEQHGIARTYAAIEQADLVLLL 301

Query: 306 KEINSKKEIS---------FPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEG 350
             ++S+  ++          P+ +  + +  K DL +        T      +S+  GEG
Sbjct: 302 --VDSRHGVTEEDRSVLTRLPERLPVLTVHNKIDLSAQPPRLEENTSGPTIYLSAINGEG 359

Query: 351 LEEL---INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDII 405
           +E L   + K     +N   +  +   + +RHL  L Q    LE A+  L+  D  L+I+
Sbjct: 360 IELLRAALLKTAGWQANIAGEGAYM--ARQRHLQALIQAKELLERAAAWLHRADQ-LEIL 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRLA  +L  ITG    + LL  IFS FCIGK
Sbjct: 417 AEELRLAQQALSSITGEFTSDDLLGEIFSSFCIGK 451


>gi|260581920|ref|ZP_05849716.1| tRNA modification GTPase TrmE [Haemophilus influenzae NT127]
 gi|260095113|gb|EEW79005.1| tRNA modification GTPase TrmE [Haemophilus influenzae NT127]
          Length = 452

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 166/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATEVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKFD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    ++ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESVNLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGIEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|269215192|ref|ZP_06159102.1| tRNA modification GTPase TrmE [Neisseria lactamica ATCC 23970]
 gi|269208082|gb|EEZ74537.1| tRNA modification GTPase TrmE [Neisseria lactamica ATCC 23970]
          Length = 536

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/456 (36%), Positives = 255/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + E +C K  P PR A+   F   DG+ 
Sbjct: 89  MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQA 147

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 148 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 206

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 207 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 266

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 267 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 325

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 326 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 385

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++     +         +S+ T
Sbjct: 386 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 445

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 446 GDGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 500

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 501 LAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 536


>gi|325201374|gb|ADY96828.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240149]
          Length = 448

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGVNDKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GDGLDALKRTLLREAGWQGEGEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|255068623|ref|ZP_05320478.1| tRNA modification GTPase TrmE [Neisseria sicca ATCC 29256]
 gi|255047121|gb|EET42585.1| tRNA modification GTPase TrmE [Neisseria sicca ATCC 29256]
          Length = 454

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 165/458 (36%), Positives = 257/458 (56%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  + TI A++T      + +IRLSG +   + + +   K P PR A    F G DG+ 
Sbjct: 1   MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGQP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+L+ F +P SFTGED  E   HG   V++ +L    ++   R+A PGEF++RAF N
Sbjct: 61  IDNGILLYFAAPASFTGEDVIELQGHGSPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + ++   R+++  + G  S    + +D L  +R  +EA LDF E
Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  + + ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 180 E-DIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D+AIVTDI GTTRD +   + L+G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298

Query: 301 LILLL----KEINSKKEI---SFPKNIDFIFIGTKSDLYS-TYTEEYDHL---------- 342
           + L+L    + +N+K +    S P+ +  I I  K+DL         D L          
Sbjct: 299 VALILIDPREGVNAKTQAILNSLPEGLKKIEIHNKADLTGEPVAVRSDGLAQTGAETVIS 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TG GL+ L + +   +  + +     + +  RHL  L +    LE A+L + +  +
Sbjct: 359 LSAKTGAGLDLLKHALLQEVGWQGESESLFL-ARSRHLNALHEAETELENAALCDNNQ-I 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ AE+LRLA  +  +ITG    + LL +IFS+FCIGK
Sbjct: 417 ELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454


>gi|51598233|ref|YP_072424.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP
           32953]
 gi|186897489|ref|YP_001874601.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis PB1/+]
 gi|81638080|sp|Q663S6|MNME_YERPS RecName: Full=tRNA modification GTPase mnmE
 gi|254811499|sp|B2K868|MNME_YERPB RecName: Full=tRNA modification GTPase mnmE
 gi|51591515|emb|CAH23187.1| putative thiophene and furan oxidation protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186700515|gb|ACC91144.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis PB1/+]
          Length = 454

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 164/454 (36%), Positives = 249/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +  +V   +  K  P PR A    F  +DG  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 64  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE +D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADRVLFM 302

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348
            +  +                 P  +    +  K+D+       T+   H    +S+ TG
Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTKVNGHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L + +K  +            + +RHL  L    R+L      L     G +++A
Sbjct: 363 EGIDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALETAARHLVQGHEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|332288923|ref|YP_004419775.1| tRNA modification GTPase TrmE [Gallibacterium anatis UMN179]
 gi|330431819|gb|AEC16878.1| tRNA modification GTPase TrmE [Gallibacterium anatis UMN179]
          Length = 454

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 172/466 (36%), Positives = 263/466 (56%), Gaps = 43/466 (9%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           EKETI A +T      + I+R+SGP   QV + +  K    PR A+   F  +DG +LD+
Sbjct: 3   EKETIVAQATPPGRGGVGILRVSGPLSEQVAKEVLGKTLK-PRFANYLPFKDIDGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F +P SFTGED  E   HGG  +++ +L+ + ++  +RLA PGEFS +AF N KI
Sbjct: 62  GIALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILQIKGIRLARPGEFSEQAFLNDKI 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R +++ + GE S+   Q +D+L ++R+++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALKSLQGEFSTKVHQLVDELIYLRTYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   +  ++   LN I+    ++    SQ K G ++R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLADGKIEAHLNQIIAKVAEVQ---SQAKQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDI GTTRDVL   + L+G  + I DTAG+R   D VE+ GI+R + E++ AD
Sbjct: 238 GRDAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRTATDEVERIGIERAWQEIDQAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL------------YSTYTE 337
            +L + +  +  E              P +I    I  K+D+            Y+T T 
Sbjct: 298 RVLFMLDSTTTDETLPEKIWPEFMSRLPPSIPVTIIRNKADISGEAEGIRTENGYTTIT- 356

Query: 338 EYDHLISSFTGEGLEELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--S 394
                +S+ T +G++ L   +K SI      +  F   + +RHL  L Q  ++L+     
Sbjct: 357 -----LSAKTQQGIQLLKAHLKESIGYQTVTEGGFL--ARRRHLEALEQAAQHLQQGHIQ 409

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L +   G +++AE L++A  +L +ITG    + LL  IFS FCIGK
Sbjct: 410 LTQFYAG-ELLAEELKMAQNALSEITGQFTSDDLLGNIFSSFCIGK 454


>gi|304398073|ref|ZP_07379948.1| tRNA modification GTPase TrmE [Pantoea sp. aB]
 gi|304354359|gb|EFM18731.1| tRNA modification GTPase TrmE [Pantoea sp. aB]
          Length = 454

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 165/459 (35%), Positives = 252/459 (54%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V   +  K  P PR A    F   DG +
Sbjct: 1   MSH-SDTIVAQATPPGRGGVGILRVSGAQAAEVARQLLGKL-PKPRYADYLPFTDSDGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSTRINHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S   +   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGRIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LI 343
            +L + +  +                 P  +    +  K+D+ S     TE   H    +
Sbjct: 298 RVLFMVDGTTTDATEAAAIWPDFVSRLPPELPITVVRNKADVTSEPPGLTEINGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ T EG++EL + +K  +      +     + +RHL  L     +L+   A L     G
Sbjct: 358 SARTSEGVDELRDHLKQSMGFA-GNMEGGFLARRRHLQALELAAMHLQQGRAQLLGARAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRVAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|264680930|ref|YP_003280840.1| tRNA modification GTPase TrmE [Comamonas testosteroni CNB-2]
 gi|262211446|gb|ACY35544.1| tRNA modification GTPase TrmE [Comamonas testosteroni CNB-2]
          Length = 475

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 168/478 (35%), Positives = 252/478 (52%), Gaps = 42/478 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     +   +C K+   PR+A+   F    G  
Sbjct: 2   LPRHNDPIAAIATAPGRGAVGIVRVSGKGIAALVRTLCGKELK-PREATYLPFRDAGGSP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPN---------LRLA 108
           +D GL I FP P S+TGED  E   HGG  V+  +L    E A+  N         LRLA
Sbjct: 61  IDHGLAIYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQSANEDGKPVLTGLRLA 120

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
            PGEF+ RAF N KIDL +AE++ADLI + TE   R +   +SG  S       D L H+
Sbjct: 121 QPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSQEIHVLRDALVHL 180

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           R  +EA LDF EEE +      +    +  L++ +++ +++   G ++R G K+VI G  
Sbjct: 181 RMLVEATLDFPEEE-IDFLQKADAFGQLERLRHQVTAVLARAHQGALLREGIKVVIAGQP 239

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R++DD VE+ G
Sbjct: 240 NAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSDDEVERIG 299

Query: 289 IKRTFLEVENADLILLLKEINSKKEIS---------------FPKNIDFIFIGTKSDL-- 331
           I R + E+  AD +L L ++   ++                  P  +  I +  K+D+  
Sbjct: 300 IARAWDEIAAADAVLFLHDLTRVEQADYAAADADIARTLQDKLPAQVPVIHVWNKTDMAA 359

Query: 332 ---YSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLS 384
               S +T + +     +S+ TG+GL+ L  ++  +    ++  P  +  +  RH+  L 
Sbjct: 360 ADVQSRHTAQLNAEQIALSARTGDGLDALRKRLLEVAG--WQSAPEGLYLARARHVEALQ 417

Query: 385 QTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +LEMA   L  +   LD++AE LRLA +SL  ITG    + LL +IFS FCIGK
Sbjct: 418 AVDAHLEMADEQLAAQSAHLDLLAEELRLAQLSLNSITGEFSSDDLLGVIFSSFCIGK 475


>gi|319775065|ref|YP_004137553.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3047]
 gi|317449656|emb|CBY85862.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3047]
          Length = 452

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 251/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA  + 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGHEA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R   D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVQLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|255020153|ref|ZP_05292222.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970295|gb|EET27788.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Acidithiobacillus
           caldus ATCC 51756]
          Length = 449

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 155/446 (34%), Positives = 252/446 (56%), Gaps = 16/446 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKG 64
           +TI A +T    + + I+RLSGP    +   +C++++P+ PR+A L+ F+   G  LD+G
Sbjct: 9   DTIVAPATAMGEAGVGILRLSGPRALAIARALCRRQRPWEPRRAYLQRFYDDRGGALDQG 68

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ FP+P SFTGED  E   HG   V+  +L++ A+    R A PGEFS RAF NG++D
Sbjct: 69  IVLYFPAPNSFTGEDVVELQGHGSPLVLQ-LLQQSARRLGARDARPGEFSERAFLNGRMD 127

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE LADLI +++E Q R ++  + G  S    +  + +  + +  EA LDFSEE D+
Sbjct: 128 LAQAEGLADLIHAQSESQARAALASLEGRFSEKINELREAILQVLALCEAGLDFSEE-DL 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +     +   +   +  + S + Q + G  +  G ++ ++G  N GKSSL NALA ++ 
Sbjct: 187 GSAHRDALEQALKTSQRRLESLLQQARQGARLARGARVALIGRPNVGKSSLLNALAGRES 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT I GTTRD++  +L + G  V++ DTAG++++ D VE+EGI+R+   V ++  +LL
Sbjct: 247 AIVTAIAGTTRDLVREELQIGGLTVELVDTAGLQDSADPVEREGIRRSRATVASSQWVLL 306

Query: 305 LKEINS---KKEISFPKNID---FIFIGTKSDLYS---TYTEEYDHL-ISSFTGEGLEEL 354
           + +  +     +      +D      +  K DL +      E    L +S+ TG GL+ L
Sbjct: 307 VADAAAGWKSDDARILAELDSQRLTIVWNKGDLVAKAPVLPEPRPQLVVSARTGAGLDAL 366

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
             +++  L    +  PFS  +  RH++ L +    L  A+        +++AE LR A  
Sbjct: 367 RMELQRSL-GAVEAAPFS--ARNRHVHALEECGNALTEAATALSMGNEELLAECLRAAGA 423

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           SL  +TG +DVE++L  IFS+FCIGK
Sbjct: 424 SLATVTGAMDVEEILGAIFSQFCIGK 449


>gi|161869216|ref|YP_001598382.1| tRNA modification GTPase TrmE [Neisseria meningitidis 053442]
 gi|205415782|sp|A9M0N5|MNME_NEIM0 RecName: Full=tRNA modification GTPase mnmE
 gi|161594769|gb|ABX72429.1| thiophene and furan oxidation protein [Neisseria meningitidis
           053442]
 gi|261393317|emb|CAX50949.1| tRNA modification GTPase TrmE [Neisseria meningitidis 8013]
 gi|308390087|gb|ADO32407.1| tRNA modification GTPase TrmE [Neisseria meningitidis alpha710]
 gi|325129416|gb|EGC52248.1| tRNA modification GTPase TrmE [Neisseria meningitidis OX99.30304]
          Length = 448

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRAILDALPSELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GDGLDALKRTLLREAGWQGEGEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|317494662|ref|ZP_07953074.1| tRNA modification GTPase TrmE [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917264|gb|EFV38611.1| tRNA modification GTPase TrmE [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 454

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 253/456 (55%), Gaps = 23/456 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A +T      + I+R+SG    +V   +  K  P PR A    F   DG +LD+
Sbjct: 3   QSDTIVAQATPPGRGGVGILRISGRQAEEVAMALLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  MPN+R+A PGEFS RAF N K+
Sbjct: 62  GIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILLMPNVRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R F+EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSEQAARSAVNSLQGAFSNRVNQLVEALTHLRIFVEAAIDFPDEE- 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  ++   +  +  ++ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++
Sbjct: 181 IDFLSDGKIEAQLNGVMGELQAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L
Sbjct: 241 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVL 300

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSF 346
            + +  +   I             PK +    +  K+D+       +    Y  + +S+ 
Sbjct: 301 FMVDGTTTDAIEPATIWPEFMARLPKTLPITVVRNKADVTGETLGLSEVNGYSLIRLSAR 360

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDI 404
           TGEG++ L + +K  +      +     + +RHL  L     +LE     L     G ++
Sbjct: 361 TGEGIDVLRDHLKQSMGFT-SNMEGGFLARRRHLQALETAAMHLEQGKEQLLSAYAG-EL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|152972614|ref|YP_001337760.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|166200482|sp|A6TG09|MNME_KLEP7 RecName: Full=tRNA modification GTPase mnmE
 gi|150957463|gb|ABR79493.1| tRNA modification GTPase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 454

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 163/459 (35%), Positives = 254/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKL-PKPRYADYLPFNDVDGTP 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNEVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D VE+ GI+R + E+  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIAQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTSAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGISEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TG+G+E L N +K  +      +     + +RHL  L +   +L+   A L     G
Sbjct: 358 SARTGDGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|87198163|ref|YP_495420.1| tRNA modification GTPase TrmE [Novosphingobium aromaticivorans DSM
           12444]
 gi|123491120|sp|Q2GC37|MNME_NOVAD RecName: Full=tRNA modification GTPase mnmE
 gi|87133844|gb|ABD24586.1| tRNA modification GTPase trmE [Novosphingobium aromaticivorans DSM
           12444]
          Length = 437

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/450 (37%), Positives = 240/450 (53%), Gaps = 30/450 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-GLDGRILDKG 64
           +TIFA+S+G  P+ I +IR+SGP        +  +  P PR+A+L       DG  LD+ 
Sbjct: 3   DTIFALSSGQPPAGIGVIRISGPGAGAALSSLAGRL-PSPRRATLATLADPRDGTHLDRT 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++  P P + TGED AE H+HGG AV+  +   L+ +P LR A PGEF+RRAF NG+ID
Sbjct: 62  MVLWLPGPATATGEDCAELHLHGGRAVIAAVEAALSSLPGLRRARPGEFTRRAFANGRID 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE LADL+S+ETE+QRR ++    G LS    +W   L  I + +EA LDFS+E+DV
Sbjct: 122 LAEAEGLADLLSAETELQRRTALAMAEGALSREVDEWRTTLLQISARLEAALDFSDEDDV 181

Query: 185 QNFSSKEVLN--------DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
                 +  +        D + L   +++ + + +  E ++ G+++V+ G  NAGKS+LF
Sbjct: 182 GAGDGTQRASLLPPHFAADCISLACSLNTWLDRPR-AEPLKEGFRVVLAGPPNAGKSTLF 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLE 295
           NAL + + AI    PGTTRD+LT    L+G      DTAG+R E    +E+ GI R    
Sbjct: 241 NALVEHEAAITAAEPGTTRDLLTHAAALDGVPFTFVDTAGLRDEGAGEIERIGIARARAA 300

Query: 296 VENADLILLLKEINSKKEISFPKNIDFIFIGTKS-DLYSTYTEEYDHLISSFTGEGL--- 351
            E ADLIL L       E   P       I  ++ D  +    +    +S+ TGEG+   
Sbjct: 301 AEKADLILWL-----GPEGLGPAGRTLWEIAARADDPGAGRKSQCAFHLSAVTGEGMAAF 355

Query: 352 -EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
              LI   +S L       P     ++R   HLS+  R LE A+  +      + AENLR
Sbjct: 356 RSALIAHARSAL-----PAPGEAALNQRQHTHLSEVARALEDAAAEQDPL---LAAENLR 407

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L    L  + G    E +LD +F +FCIGK
Sbjct: 408 LGRRGLDALVGRTGTEDMLDTLFGRFCIGK 437


>gi|85712623|ref|ZP_01043670.1| tRNA modification GTPase [Idiomarina baltica OS145]
 gi|85693614|gb|EAQ31565.1| tRNA modification GTPase [Idiomarina baltica OS145]
          Length = 467

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ++I A +T      + I+R+SGP   QV   +     P PRKA    F+  +G +LD+G+
Sbjct: 18  DSIVAQATPPGRGGVGIVRVSGPQAKQVASALIGHCPP-PRKAEYVPFYDKEGHLLDEGI 76

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  +++ I++ + ++P++R A PGEFS RAF N K+DL
Sbjct: 77  ALFFKGPNSFTGEDVLELQGHGGPVLIDMIIKAILELPDIRPARPGEFSERAFLNDKLDL 136

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      +D + H+R ++EA +DF +EE + 
Sbjct: 137 TQAEAIADLIDTNSEQAAKAALQSLKGEFSHKIDVLVDAVIHLRMYVEAAIDFPDEE-ID 195

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  +V ND+  + + +     Q K G ++R G +IVI G  NAGKSSL NALA ++ A
Sbjct: 196 FLSDGKVANDLAEIIDQLFHIEQQAKQGTLMREGMRIVIAGRPNAGKSSLLNALAGRESA 255

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI+R + E+  AD +L +
Sbjct: 256 IVTEIAGTTRDVLREHIQIDGMPLHIIDTAGLRDSPDQVERIGIERAWDEIRQADRVLFM 315

Query: 306 KEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTG 348
            +      I             P ++ F  I  K DL    T   +H       +S+ TG
Sbjct: 316 VDSQETSAIHPDDIWPEFFAQLPDDMPFTVIRNKIDLTQENTGLTEHNGIPVIQLSAKTG 375

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G+E+L   +K  +         S  + +RHL  L +   +L +   + E +   +++AE
Sbjct: 376 HGIEQLREHLKHCVGYSATS-EGSFMARRRHLDALEKAKSHLLLGQEHLELNLAGELLAE 434

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LRL    L +ITG    + LL  IF  FCIGK
Sbjct: 435 ELRLTQQHLNEITGEFTSDDLLGQIFGSFCIGK 467


>gi|260774975|ref|ZP_05883875.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609065|gb|EEX35224.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 453

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/454 (36%), Positives = 250/454 (55%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A +T      + IIR+SGP   +V   +  K+   PR A    F   DG  LD+G+
Sbjct: 4   ETIVAQATAPGRGGVGIIRVSGPLAAKVASEVTGKEL-RPRYAEYLSFTAQDGTQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ +++ + ++P +R A PGEFS RAF N K+DL
Sbjct: 63  ALYFPNPNSFTGEDVLELQGHGGPVVMDMLIKRILQIPGIRTARPGEFSERAFLNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + G  S+     ++ L H+R ++EA +DF EEE + 
Sbjct: 123 AQAEAIADLIDASSEQAAKSALKSLQGAFSNRIQTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVSADLQTIIDNLTAVRKEATQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+E AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWEEIEQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISSFT 347
                 +    KEI        P NI    I  K D  +  T    H+       +S+ T
Sbjct: 302 VDGTTTDATDPKEIWPDFVDRLPSNIGMTVIRNKVD-QTDETLGICHVNDPTLIRLSART 360

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           G+G+E L   +K  +            + +RHL  L +   +L++     E     +I+A
Sbjct: 361 GQGVESLRTHLKECMGFAGGH-EGGFMARRRHLEALEKAAEHLDIGQQQLEGYMAGEILA 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 420 EELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|229846059|ref|ZP_04466171.1| tRNA modification GTPase TrmE [Haemophilus influenzae 7P49H1]
 gi|229811063|gb|EEP46780.1| tRNA modification GTPase TrmE [Haemophilus influenzae 7P49H1]
          Length = 452

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 169/455 (37%), Positives = 255/455 (56%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S      +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDL---YSTYTEEYDHLI---SSFT 347
                      L ++ S+     P  +    +  K DL    ++ +EE  + I   S+ T
Sbjct: 300 MLDSSDPESVDLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEEGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGIEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG      LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSNDLLGNIFSSFCIGK 452


>gi|329123024|ref|ZP_08251595.1| tRNA modification GTPase TrmE [Haemophilus aegyptius ATCC 11116]
 gi|327471955|gb|EGF17395.1| tRNA modification GTPase TrmE [Haemophilus aegyptius ATCC 11116]
          Length = 461

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 11  KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 69

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 70  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 129

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF +EE +
Sbjct: 130 LAQAEAIADLIYATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 188

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 189 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 248

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 249 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAIDEVERIGISRAWTEIEQADRIIL 308

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 309 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAHT 368

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 369 HDGVQLLREHLKQAMGFQ-AGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHEG-ELL 426

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 427 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 461


>gi|240013240|ref|ZP_04720153.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae DGI18]
 gi|240015686|ref|ZP_04722226.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae FA6140]
 gi|240079821|ref|ZP_04724364.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae FA19]
 gi|240116977|ref|ZP_04731039.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID1]
 gi|240120311|ref|ZP_04733273.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID24-1]
 gi|268595964|ref|ZP_06130131.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae FA19]
 gi|268602658|ref|ZP_06136825.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID1]
 gi|268549752|gb|EEZ44771.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae FA19]
 gi|268586789|gb|EEZ51465.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID1]
          Length = 448

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PEPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI +      RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAALDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K  +   + P ++  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GDGLDALKRTLLCEAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|261341633|ref|ZP_05969491.1| hypothetical protein ENTCAN_08099 [Enterobacter cancerogenus ATCC
           35316]
 gi|288315988|gb|EFC54926.1| tRNA modification GTPase TrmE [Enterobacter cancerogenus ATCC
           35316]
          Length = 454

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 164/459 (35%), Positives = 254/459 (55%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDSDGTP 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNEVMKDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             P  +    +  K+D+       ++   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ TGEG+++L N +K  +      +     + +RHL  L +   +L    A L     G
Sbjct: 358 SARTGEGVDDLRNHLKQSMGFD-TSMEGGFLARRRHLQALEEAANHLVQGKAQLIGAWAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|299530922|ref|ZP_07044336.1| tRNA modification GTPase TrmE [Comamonas testosteroni S44]
 gi|298721143|gb|EFI62086.1| tRNA modification GTPase TrmE [Comamonas testosteroni S44]
          Length = 475

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 168/478 (35%), Positives = 252/478 (52%), Gaps = 42/478 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     +   +C K+   PR+A+   F    G  
Sbjct: 2   LPRHNDPIAAIATAPGRGAVGIVRVSGKGIAALVRALCGKELK-PREATYLPFRDAGGSP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPN---------LRLA 108
           +D GL I FP P S+TGED  E   HGG  V+  +L    E A+  N         LRLA
Sbjct: 61  IDHGLAIYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQSTNEDGKPVLTGLRLA 120

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
            PGEF+ RAF N KIDL +AE++ADLI + TE   R +   +SG  S       D L H+
Sbjct: 121 QPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAVRSASRSLSGAFSQEIHVLRDALVHL 180

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           R  +EA LDF EEE +      +    +  L++ +++ +++   G ++R G K+VI G  
Sbjct: 181 RMLVEATLDFPEEE-IDFLQKADAFGQLERLRHQVTAVLARAHQGALLREGIKVVIAGQP 239

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R++DD VE+ G
Sbjct: 240 NAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSDDEVERIG 299

Query: 289 IKRTFLEVENADLILLLKEINSKKEIS---------------FPKNIDFIFIGTKSDL-- 331
           I R + E+  AD +L L ++   ++                  P  +  I +  K+D+  
Sbjct: 300 IARAWDEIAAADAVLFLHDLTRVEQADYAAADADIARTLQDKLPAQVPVIHVWNKTDMAA 359

Query: 332 ---YSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLS 384
               S +T + +     +S+ TG+GL+ L  ++  +    ++  P  +  +  RH+  L 
Sbjct: 360 ADVQSRHTAQLNAEQIALSARTGDGLDALRKRLLEVAG--WQSAPEGLYLARARHVEALQ 417

Query: 385 QTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +LEMA   L  +   LD++AE LRLA +SL  ITG    + LL +IFS FCIGK
Sbjct: 418 AVDAHLEMADEQLAAQSAHLDLLAEELRLAQLSLNSITGEFSSDDLLGVIFSSFCIGK 475


>gi|296114112|ref|YP_003628050.1| tRNA modification GTPase TrmE [Moraxella catarrhalis RH4]
 gi|295921806|gb|ADG62157.1| tRNA modification GTPase TrmE [Moraxella catarrhalis RH4]
          Length = 466

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 169/464 (36%), Positives = 262/464 (56%), Gaps = 37/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG   +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAHFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                + N +  + + I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LPDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307

Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342
           ++ ++ + ++    +                 I +  KSDL         S  T+    L
Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLVSKPVLQVSCETKSAPKL 367

Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396
             +S  TGEGL+ELI     IL+ K  F     S+ +  RHL  L++   Y   A   L 
Sbjct: 368 VYVSCETGEGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G +++AE+LR +  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 424 IYHAG-ELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466


>gi|145628055|ref|ZP_01783856.1| tRNA modification GTPase TrmE [Haemophilus influenzae 22.1-21]
 gi|144979830|gb|EDJ89489.1| tRNA modification GTPase TrmE [Haemophilus influenzae 22.1-21]
          Length = 452

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  VALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S      +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGIEGGFLARRRHLDALEKAAEHLQIGLVQLTEFYAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGSIFSSFCIGK 452


>gi|59802408|ref|YP_209120.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae FA 1090]
 gi|194100062|ref|YP_002003202.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae NCCP11945]
 gi|239998058|ref|ZP_04717982.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae 35/02]
 gi|240112030|ref|ZP_04726520.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae MS11]
 gi|240124802|ref|ZP_04737688.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae SK-92-679]
 gi|254492836|ref|ZP_05106007.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae 1291]
 gi|268593908|ref|ZP_06128075.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae 35/02]
 gi|268598084|ref|ZP_06132251.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae MS11]
 gi|268683378|ref|ZP_06150240.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|293397863|ref|ZP_06642069.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae F62]
 gi|81311136|sp|Q5F529|MNME_NEIG1 RecName: Full=tRNA modification GTPase mnmE
 gi|226704783|sp|B4RRB9|MNME_NEIG2 RecName: Full=tRNA modification GTPase mnmE
 gi|59719303|gb|AAW90708.1| putative thiophene and furan oxidation protein [Neisseria
           gonorrhoeae FA 1090]
 gi|193935352|gb|ACF31176.1| tRNA modification GTPase [Neisseria gonorrhoeae NCCP11945]
 gi|226511876|gb|EEH61221.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae 1291]
 gi|268547297|gb|EEZ42715.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae 35/02]
 gi|268582215|gb|EEZ46891.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae MS11]
 gi|268623662|gb|EEZ56062.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|291611809|gb|EFF40878.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae F62]
 gi|317165500|gb|ADV09041.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 448

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PEPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI +      RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEGLITLRMLVEAALDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K  +   + P ++  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GDGLDALKRTLLCEAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|22127986|ref|NP_671409.1| tRNA modification GTPase TrmE [Yersinia pestis KIM 10]
 gi|45443733|ref|NP_995272.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Microtus str.
           91001]
 gi|108810138|ref|YP_654054.1| tRNA modification GTPase TrmE [Yersinia pestis Antiqua]
 gi|108814120|ref|YP_649887.1| tRNA modification GTPase TrmE [Yersinia pestis Nepal516]
 gi|145601169|ref|YP_001165245.1| tRNA modification GTPase TrmE [Yersinia pestis Pestoides F]
 gi|150260963|ref|ZP_01917691.1| putative thiophene and furan oxidation protein [Yersinia pestis
           CA88-4125]
 gi|162421232|ref|YP_001608454.1| tRNA modification GTPase TrmE [Yersinia pestis Angola]
 gi|165926155|ref|ZP_02221987.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939964|ref|ZP_02228501.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009545|ref|ZP_02230443.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213299|ref|ZP_02239334.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401538|ref|ZP_02307032.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422868|ref|ZP_02314621.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425489|ref|ZP_02317242.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229839810|ref|ZP_04459969.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229841895|ref|ZP_04462051.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229896772|ref|ZP_04511935.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis Pestoides A]
 gi|229904660|ref|ZP_04519771.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis Nepal516]
 gi|270488372|ref|ZP_06205446.1| tRNA modification GTPase TrmE [Yersinia pestis KIM D27]
 gi|294505627|ref|YP_003569689.1| tRNA modification GTPase [Yersinia pestis Z176003]
 gi|123073044|sp|Q1CCJ3|MNME_YERPN RecName: Full=tRNA modification GTPase mnmE
 gi|123245359|sp|Q1C0B3|MNME_YERPA RecName: Full=tRNA modification GTPase mnmE
 gi|166234833|sp|A4TSL0|MNME_YERPP RecName: Full=tRNA modification GTPase mnmE
 gi|254811500|sp|A9R5S1|MNME_YERPG RecName: Full=tRNA modification GTPase mnmE
 gi|21961132|gb|AAM87660.1|AE014013_5 GTP-binding protein [Yersinia pestis KIM 10]
 gi|45438603|gb|AAS64149.1| GTP-binding protein [Yersinia pestis biovar Microtus str. 91001]
 gi|108777768|gb|ABG20287.1| tRNA modification GTPase trmE [Yersinia pestis Nepal516]
 gi|108782051|gb|ABG16109.1| tRNA modification GTPase trmE [Yersinia pestis Antiqua]
 gi|145212865|gb|ABP42272.1| tRNA modification GTPase trmE [Yersinia pestis Pestoides F]
 gi|149290371|gb|EDM40448.1| putative thiophene and furan oxidation protein [Yersinia pestis
           CA88-4125]
 gi|162354047|gb|ABX87995.1| tRNA modification GTPase TrmE [Yersinia pestis Angola]
 gi|165912090|gb|EDR30730.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165922015|gb|EDR39192.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165991467|gb|EDR43768.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205597|gb|EDR50077.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958260|gb|EDR55281.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167048920|gb|EDR60328.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055503|gb|EDR65296.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229678778|gb|EEO74883.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis Nepal516]
 gi|229691234|gb|EEO83287.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229696176|gb|EEO86223.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229700210|gb|EEO88246.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis Pestoides A]
 gi|262363792|gb|ACY60513.1| tRNA modification GTPase [Yersinia pestis D106004]
 gi|262367728|gb|ACY64285.1| tRNA modification GTPase [Yersinia pestis D182038]
 gi|270336876|gb|EFA47653.1| tRNA modification GTPase TrmE [Yersinia pestis KIM D27]
 gi|294356086|gb|ADE66427.1| tRNA modification GTPase [Yersinia pestis Z176003]
 gi|320017433|gb|ADW01005.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 454

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 164/454 (36%), Positives = 249/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +  +V   +  K  P PR A    F  +DG  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 64  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE +D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADRVLFM 302

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348
            +  +                 P  +    +  K+D+       T+   H    +S+ TG
Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTKVNGHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L + +K  +            + +RHL  L    R+L      L     G +++A
Sbjct: 363 EGIDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALETAARHLIQGHEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|309751333|gb|ADO81317.1| tRNA modification GTPase mnmE [Haemophilus influenzae R2866]
          Length = 461

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 250/455 (54%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 11  KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 69

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 70  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 129

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S      +D + ++R+++EA +DF +EE +
Sbjct: 130 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEE-I 188

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA  + 
Sbjct: 189 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGHEA 248

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R   D VE+ GI R + E+E AD I+L
Sbjct: 249 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNATDEVERIGISRAWTEIEQADRIIL 308

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 309 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 368

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 369 HDGVQLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 426

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 427 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 461


>gi|322789734|gb|EFZ14900.1| hypothetical protein SINV_07474 [Solenopsis invicta]
          Length = 458

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 166/462 (35%), Positives = 250/462 (54%), Gaps = 49/462 (10%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGLLIVFPSPESFTG 77
            ++++R+SG    +  + +    K  PR+A LR       G ++D GL + FP P SFTG
Sbjct: 6   GVAVVRISGSRSLEALKRMTSISKLEPRRAFLRKIRDPKTGEVIDNGLCLWFPGPYSFTG 65

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           EDS EFHVHGG A++  +++ L+K+  ++ A PGEF+RRAF N K+DL E E LADLI +
Sbjct: 66  EDSVEFHVHGGSAILTRLMQVLSKL-QVQPALPGEFTRRAFYNNKLDLTEVEGLADLIEA 124

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           ETE QR+ ++    G L  LY  W   L+   + IEA +DF EE+++++   +   + + 
Sbjct: 125 ETECQRKQALLQADGILRKLYDNWRKVLSESVASIEAYIDFGEEDNIESDVVQNAHHALR 184

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L  D+  H++ G+ GEI+RNG + VI+G  N GKSSL N L +++ AIVT I GTTRDV
Sbjct: 185 QLMRDLEEHLADGRRGEILRNGVRTVIVGEPNVGKSSLLNHLVQRNAAIVTPIAGTTRDV 244

Query: 258 LTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENA----------------- 299
           + +  ++ GY V I+DTAGI  +T DIVE EG++R     ENA                 
Sbjct: 245 IELTANISGYPVLIADTAGITDDTGDIVEAEGVRRARRHAENADFVVVVVDAFKCASSGM 304

Query: 300 -------------DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
                         ++ LL +I  ++ +      D +    K +    +++    L S  
Sbjct: 305 MYEDYIREYLSSLGILELLTKIGRERYVVIANKKDLL----KEEEKRCFSDTEAILTSCR 360

Query: 347 TGEGLEELI----NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR----YLEMASLNEK 398
           T +G ++L+    ++   I  N   + P    S  RH  HL+Q +R    Y E+ +  + 
Sbjct: 361 TEDGFQDLLRSLTDRFSKICGNPSAESP--TISQARHRNHLAQCLRHLQSYFELCANEQH 418

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  + I AE +  A   LG+ITG V   ++LDIIF  FCIGK
Sbjct: 419 D--MAIAAEEIHKAMRELGRITGHVSTNEILDIIFKNFCIGK 458


>gi|311109664|ref|YP_003982517.1| tRNA modification GTPase TrmE [Achromobacter xylosoxidans A8]
 gi|310764353|gb|ADP19802.1| tRNA modification GTPase TrmE [Achromobacter xylosoxidans A8]
          Length = 450

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 172/438 (39%), Positives = 251/438 (57%), Gaps = 23/438 (5%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           I ++R+SG    ++   + +++   PR A    F    G +LD+G+ I F +P S+TGED
Sbjct: 19  IGVVRISGTDLSELVRRLFQREL-TPRHAHYLPFKSGAGELLDEGIAIYFRAPHSYTGED 77

Query: 80  SAEFHVHGGIAVVNGILEE-LAKMPNL--RLANPGEFSRRAFENGKIDLLEAESLADLIS 136
             E   HGG AV+  +LE  LA   +L  RLA PGEF+RRAF N ++DL +AE++ADLI 
Sbjct: 78  VLELQGHGGPAVLRRVLESCLAAGRDLDIRLAEPGEFTRRAFLNDRMDLAQAEAVADLIE 137

Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED--VQNFSSKEVLN 194
           + +    R +M  +SG+ S+      D++ H+R  +EA LDF EEE   ++ + ++  L 
Sbjct: 138 ASSVAAARGAMASLSGDFSARVNDLSDRIIHLRMLVEATLDFPEEEIDFLEKYQARPTLE 197

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
               L  D+S  I+Q + G I+R G  +V+ G  N GKSSL NALA  D+AIVT I GTT
Sbjct: 198 ---ALTADLSKLIAQARQGVILREGLHVVLAGQPNVGKSSLLNALAGDDIAIVTPIAGTT 254

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK-------E 307
           RD +  ++ ++G  + I DTAG+RET+D VE  GI RT+ E+E AD+IL L+       E
Sbjct: 255 RDKVVQEIHIDGVPLHIVDTAGLRETEDTVESIGIARTWQEIERADVILHLQDATQPGDE 314

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYST-YTEEYDHL-ISSFTGEGLEELINKIKSILS-N 364
           ++++     P     + +  K DL ST +      L IS+  G GL+EL  ++  I   N
Sbjct: 315 LDAQITARLPPRTPVLKVFNKVDLLSTPFAAGPQELGISAKRGAGLDELRAELLRIAGWN 374

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EKDCGLDIIAENLRLASVSLGKITGC 422
              + P+   + +RHL+ L     +LE+A  +  + D  LD+ AE LRLA  SL  ITG 
Sbjct: 375 PGGESPWL--ARERHLHALQDAAEHLELAGAHAEQDDRVLDLFAEELRLAHDSLSSITGK 432

Query: 423 VDVEQLLDIIFSKFCIGK 440
              + LL  IFS FCIGK
Sbjct: 433 FTSDDLLGEIFSSFCIGK 450


>gi|52424535|ref|YP_087672.1| tRNA modification GTPase TrmE [Mannheimia succiniciproducens
           MBEL55E]
 gi|81387495|sp|Q65VC3|MNME_MANSM RecName: Full=tRNA modification GTPase mnmE
 gi|52306587|gb|AAU37087.1| ThdF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 454

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 170/458 (37%), Positives = 259/458 (56%), Gaps = 29/458 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      + I+R+SGP   +V + +  K+   PR A+   F   DG ILD+G
Sbjct: 4   KETIVAQATPIGRGGVGILRVSGPLATEVAKAVVDKELK-PRMANYLPFKDEDGTILDQG 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  EF  HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 63  IALYFKSPNSFTGEDVVEFQGHGGQVVLDLLLKRILQVKGVRLARPGEFSEQAFLNDKLD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI++ +E   R +++ + GE S    Q +D + ++R+++EA +DF +EE +
Sbjct: 123 LAQAEAIADLINASSEQAARSALKSLQGEFSKKINQLVDSVIYLRTYVEAAIDFPDEE-I 181

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LND++   + + S   QG    I+R G K+VI G  NAGKSSL NALA 
Sbjct: 182 DFLADGKIEGHLNDLIGQLDKVRSEAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAG 238

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD 
Sbjct: 239 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGITRAWNEIEQADR 298

Query: 302 ILLL--------KEINSKKE---ISFPKNIDFIFIGTKSDLYS--TYTEEYDHL----IS 344
           ++L+        K+++  K       P NI    +  KSDL       EE +      +S
Sbjct: 299 VILMLDSTDPDSKDLDQAKAEFLSKLPGNIPVTIVRNKSDLSGEKESIEEQEGFTVIRLS 358

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402
           + T +G+  L   +K  +  +         + +RHL  L     +L++    L +   G 
Sbjct: 359 AQTQQGVSLLREHLKQSMGYQ-TGTEGGFLARRRHLEALEHAAEHLQIGRVQLTQFHAG- 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+    LG+ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRIVQDYLGEITGKFTSDDLLGNIFSSFCIGK 454


>gi|213405481|ref|XP_002173512.1| tRNA modification GTPase mss1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001559|gb|EEB07219.1| tRNA modification GTPase mss1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 501

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 171/484 (35%), Positives = 257/484 (53%), Gaps = 54/484 (11%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL-RYFFGLDGRIL 61
             K T++A+ST    +A+++IR+SGP   +V + +C    P PR A+L R       R +
Sbjct: 26  QSKHTVYALSTAPGKAAVAVIRVSGPQASEVAKTLCGSV-PKPRMATLLRLLHPKTKRQI 84

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA--KMPNLRLANPGEFSRRAFE 119
           D+ L++ FP P SFTGED+ EFH HGG  VV   L  +A  ++P LR A  GEFS++AF 
Sbjct: 85  DRALVLFFPGPASFTGEDTIEFHTHGGSGVVQETLTAIAETRLPALRYAERGEFSKQAFY 144

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DLL+ ESLAD+I +ET  Q  L+ E +  +      QW D +   R+ +E  LDFS
Sbjct: 145 NGKMDLLQLESLADVIDAETAEQVYLANEDIDTQTRKRVSQWRDTILECRALLETLLDFS 204

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE  V+   S+ VL+    L ND+ S   + +  E  R G + V+ G +NAGKSSL N+L
Sbjct: 205 EEHSVEEDFSRAVLDKTRSLLNDMHSFQIRQRTREAFRFGTQAVLFGPTNAGKSSLVNSL 264

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTFLEVE 297
           A++ VA+V+D PGTTRD L + L++ GY V +SDTAG+R  +    VE  GI+      +
Sbjct: 265 ARRQVALVSDEPGTTRDALQVQLNIHGYPVWLSDTAGLRHHNVSSAVEAAGIQLAKQRTK 324

Query: 298 NADLILLLKEINSK---------------KEISFPKNID---FIFIGTKSDLYSTYTEEY 339
            + L+ L+  +N                 + +S  +N        I  K+DL      E 
Sbjct: 325 QSQLLFLVLPMNEYLHNSQAVTQEAKGLLRSLSCDENNSQRLLFVILNKADLL-----EN 379

Query: 340 DH---------------------LISSFTGEGLEELINKIKSILSNKFKK--LPFSIPSH 376
           DH                     ++S  TG GL+  +N++ +IL +   +      + S 
Sbjct: 380 DHQKQQAQKAVCSEFGLSPERVAVLSCLTGNGLDSFLNQVSTILRSFTARNIQNNELASE 439

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436
            R+   L    ++L++      D  + I+AE LRLAS SL  + G ++ E++L  +F +F
Sbjct: 440 NRYRQCLKDCCQHLQIVLTPNLD--VTIMAEELRLASNSLEMMIGTMNNEEVLSQVFQRF 497

Query: 437 CIGK 440
           CIGK
Sbjct: 498 CIGK 501


>gi|315634810|ref|ZP_07890092.1| tRNA modification GTPase TrmE [Aggregatibacter segnis ATCC 33393]
 gi|315476362|gb|EFU67112.1| tRNA modification GTPase TrmE [Aggregatibacter segnis ATCC 33393]
          Length = 451

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 170/457 (37%), Positives = 253/457 (55%), Gaps = 28/457 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP    V   +  K  P PR A    F   DG +LD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPKAADVAHAVLGKC-PKPRMADYLPFKDADGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F  P SFTGED  E   HGG  V++ +L+ +  +  +RLA PGEFS +AF N K+D
Sbjct: 61  ITLYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILLIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-I 179

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LN I+   + + +   QG    I+R G K+VI G  NAGKSSL NALA 
Sbjct: 180 DFLADGKIEGHLNGIIAQLDQVRAEAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAG 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRDVL   + L+G  + I DTAG+R+  D VE+ GI R + E+E AD 
Sbjct: 237 REAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDATDEVERIGISRAWNEIEQADR 296

Query: 302 ILL----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISS 345
           ILL          L ++ S+     P NI    I  K+DL       Y+        +S+
Sbjct: 297 ILLMLDSSDSEQDLAKVRSEFLAKLPNNIPVTIIRNKADLTGETERLYEQDGYTVVNLSA 356

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403
            T +G++ L   +K  +  +   +     + +RHL  L Q  ++L+     L +   G +
Sbjct: 357 KTQQGVDLLREHLKQAMGYQ-TGIEGGFLARRRHLEALEQAAQHLQTGHIQLTQFHAG-E 414

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 415 LLAEELRMVQDALSEITGQFTSDDLLTNIFSSFCIGK 451


>gi|99082704|ref|YP_614858.1| tRNA modification GTPase TrmE [Ruegeria sp. TM1040]
 gi|122984065|sp|Q1GCM0|MNME_SILST RecName: Full=tRNA modification GTPase mnmE
 gi|99038984|gb|ABF65596.1| tRNA modification GTPase trmE [Ruegeria sp. TM1040]
          Length = 428

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 160/439 (36%), Positives = 248/439 (56%), Gaps = 16/439 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETIFA++T    + +++IR+SGP   ++ E + ++  P  R           G ILD+ L
Sbjct: 2   ETIFALATAQGKAGVAVIRVSGPHAIEIGEKLTRRTLP-ARGMIFSKLKDSAGEILDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F SP+SFTGE+  EF +HG IAVV+ ++  + +    RLA+PGEF+RRA +NGK+DL
Sbjct: 61  VLSFTSPDSFTGENIVEFQLHGSIAVVSAVMSAIEETGVARLADPGEFTRRALDNGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ +   ++G L  L  +W   L    S IE  +DF++EE   
Sbjct: 121 TQVEGLADLIDAETEAQRKQAQVILAGTLGDLADRWRTDLIRAASLIEVTIDFADEEVPV 180

Query: 186 NFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           + +   K++L+ +L   +DI   +    + E IR G+++ I+G  N GKS+L NALA + 
Sbjct: 181 DVTPEVKQLLSGVL---HDIEKEVDGVAIAERIREGFEVAIVGSPNVGKSTLLNALAGRT 237

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AI ++  GTTRDV+ + +DL G  V + DTAG+RETDD VE  GI+      E AD+ +
Sbjct: 238 AAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETDDHVEGIGIRLAQERAERADIRV 297

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
            L E +    I   +  D   +    +  S         IS  TG+G+++L+++I   L 
Sbjct: 298 FLAEEDESFSIQMREG-DLRLLPKADERRSAK-----GAISGRTGQGVDDLVSRISDTLR 351

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITG 421
           N+       I +  RH   +++ V  L  A   + +     D+ AE++R A  +L  + G
Sbjct: 352 NRTAH--DGIATRARHRETMNRAVLSLRQAIEVVEQGPEFYDLAAEDMRSAIRALELLVG 409

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            ++VE LLD IFS FC+GK
Sbjct: 410 RINVENLLDEIFSSFCLGK 428


>gi|302381483|ref|YP_003817306.1| tRNA modification GTPase TrmE [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192111|gb|ADK99682.1| tRNA modification GTPase TrmE [Brevundimonas subvibrioides ATCC
           15264]
          Length = 433

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 169/440 (38%), Positives = 252/440 (57%), Gaps = 14/440 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-GLDGRILDKG 64
           +TIFA++T A   AI+I+RLSGP        +        R ASLR    G D  ++D+ 
Sbjct: 3   DTIFALATPAGRGAIAILRLSGPDTDAALTALGAGTV-RARVASLRTLRQGPD--VIDQA 59

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P S+TGED AE H+HGG AVV      L  +  LR A+PGEF+RRAFENG++D
Sbjct: 60  LVLRFPGPGSYTGEDCAELHLHGGRAVVEAASSALIAL-GLRPADPGEFTRRAFENGRMD 118

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE-- 182
           L +AE++ADLI +ET  Q   ++  + G LS  Y  +   L    + +EA++DF +EE  
Sbjct: 119 LAQAEAVADLIDAETRAQAGQALGQLEGALSQTYAGFRRDLLKALALVEAEIDFPDEELP 178

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D    ++  VL+ +    N   +   +G+    +R GY+IV++G +NAGKS+LFNAL  +
Sbjct: 179 DHLAQTAGPVLDGLSEALNAALADADRGRR---VREGYRIVLIGETNAGKSALFNALVAR 235

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT I GTTRDVL  DL + GY V +SDTAG+R++ D VE EG++R     + ADL 
Sbjct: 236 EAAIVTPIAGTTRDVLDADLIMGGYAVTLSDTAGLRDSADPVEAEGVRRARARAQAADLR 295

Query: 303 LLLKEINSKK--EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           L ++     +     F    D + + TK+DL +        ++S+ TGEG+ +L   I++
Sbjct: 296 LWVRAPGDPEGDAAMFTTPQDLV-VWTKADLGARDPAAGGLVVSATTGEGMSDLRAAIEA 354

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
            L        F   + +RH   L + +  +E A         ++  E+LR A+ +LG++T
Sbjct: 355 RLIRDLAGADFPAVTRERHRRRLVEALASVE-AGRARLGSAPELAGEDLRRAADALGRVT 413

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G + VE +L  +FS FCIGK
Sbjct: 414 GAIGVEDILGEVFSTFCIGK 433


>gi|270264114|ref|ZP_06192381.1| tRNA modification GTPase mnmE [Serratia odorifera 4Rx13]
 gi|270041763|gb|EFA14860.1| tRNA modification GTPase mnmE [Serratia odorifera 4Rx13]
          Length = 455

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 166/459 (36%), Positives = 250/459 (54%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TI A +T      + I+R+SG       + +  K  P PR A    F    G  
Sbjct: 1   MSSTTDTIVAQATPPGRGGVGILRISGRGAKDAAQALLGKL-PKPRYADYLPFRDAAGAT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 60  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R +M  + G  S+   Q ++ LTH+R ++EA +DF +
Sbjct: 120 DKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTRIHQLVEALTHLRIYVEAAIDFPD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 180 EE-IDFLSDGKIEAQLNGVMADLDNVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 239 GRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQAD 298

Query: 301 LILLL-----------KEINSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDH---LI 343
            +L +            EI  +     P ++    +  K+D+       TE   H    +
Sbjct: 299 RVLFMVDGTTTAATEPAEIWPEFMARLPHSLPITVVRNKADITGETLGMTEVNGHSLIRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401
           S+ TGEG++ L + +K  +      +     + +RHL  L Q   +L      L     G
Sbjct: 359 SARTGEGIDLLRDHLKQSMGFT-SNMEGGFLARRRHLQALEQAALHLVEGKEQLVSAYAG 417

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 418 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 455


>gi|145301203|ref|YP_001144044.1| tRNA modification GTPase TrmE [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|166200467|sp|A4STS4|MNME_AERS4 RecName: Full=tRNA modification GTPase mnmE
 gi|142853975|gb|ABO92296.1| tRNA modification GTPase TrmE [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 453

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 169/453 (37%), Positives = 251/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SGP+  QV E +  K  P  R A    F    G+ LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIVRVSGPAAEQVAEIVLGKL-PRVRYAEYLPFKDEQGQPLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            ++F +P SFTGED  E   HGG  +++ ++  + ++  LR A PGEFS RAF N K+DL
Sbjct: 63  ALLFKAPNSFTGEDVLELQGHGGPVIMDMLVRRILQIKGLRPARPGEFSERAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M  + G+ SS   Q ++ L  +R ++EA +DF +EE + 
Sbjct: 123 AQAEAIADLIEASSEQAARSAMHSLQGQFSSKIQQLVESLIRLRIYVEAAIDFPDEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  +V  D+  +  ++    S+ K G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 182 FLSDGKVAGDLYAIMAELDGVRSEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGRESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+E AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTLDKVEQIGIERAWAEIEQADRVLFM 301

Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHL---ISSFTG 348
                      +EI  +     PK+I    +  K+DL       ++E  H    IS+ T 
Sbjct: 302 VDGTTTDAIDPREIWPEFVDRLPKDIGLTVVRNKADLTGEDLAPSQELGHAVYRISAKTE 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            GL  L   +K+ +  +         + +RHL  L +    L +A    E     +++AE
Sbjct: 362 LGLPALREHLKACMGFQ-GNTEGGFMARRRHLDALERAAERLLVAKDQLEIYVAGELVAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453


>gi|145638177|ref|ZP_01793787.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittII]
 gi|145272506|gb|EDK12413.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittII]
          Length = 452

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 250/455 (54%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S      +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA  + 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGHEA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R   D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVQLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|254447523|ref|ZP_05060989.1| tRNA modification GTPase TrmE [gamma proteobacterium HTCC5015]
 gi|198262866|gb|EDY87145.1| tRNA modification GTPase TrmE [gamma proteobacterium HTCC5015]
          Length = 432

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 163/437 (37%), Positives = 245/437 (56%), Gaps = 21/437 (4%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SGP    + E + +  +  PR A    F+  +G++LD+G+ + FP P S+TGED
Sbjct: 1   MGIVRVSGPQARSMGEQLTRLSECRPRYAHYGPFYDSEGQVLDRGISLYFPGPHSYTGED 60

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             EF  HGG  V+N +L+ + K+   R A PGEF+ RAF N K+DL +AE++ADLI S T
Sbjct: 61  VFEFQGHGGPVVLNLLLKSVFKL-GARPAQPGEFTERAFLNDKMDLAQAEAVADLIESTT 119

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E     +   +SG  SS     +D L +IR +IEA LDF EEE +      E+   +  L
Sbjct: 120 EQAALAATRSLSGAFSSRIQTLLDSLIYIRLYIEAALDFPEEE-IDFLGDSELAQRMQQL 178

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           + D++S     + G+++R G  +V+LG  NAGKSSL NALA  D AIVTD+ GTTRDVL 
Sbjct: 179 RLDVASVKQSVRQGKLLREGMSVVLLGQPNAGKSSLLNALAGDDTAIVTDVAGTTRDVLQ 238

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-- 317
             + L+G  + I DTAG+R+T D+VE EG++R +  VE AD +LLL  I++++       
Sbjct: 239 QAIHLDGLPLNIIDTAGLRDTQDVVEAEGVRRAWAAVEQADRVLLL--IDAERGFDHGDQ 296

Query: 318 --------KNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGEGLEELINKIKSILS 363
                    + +F ++  K D      +      ++   IS+  GEG++ L   +K  + 
Sbjct: 297 AIVDALDRHSTNFDYLWNKIDRLGQAPKIEKKSGQWHLSISASLGEGIDLLSKHLKEAMG 356

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            K +     I + +RH+  L    + +E A+        ++ AE LR A  S+ +ITG  
Sbjct: 357 YKQETEGLFI-ARQRHIESLEAASKAIECAADQLSVGAGELAAEELRQAQESMSQITGEF 415

Query: 424 DVEQLLDIIFSKFCIGK 440
             + LL  IFS+FCIGK
Sbjct: 416 SSDDLLGEIFSRFCIGK 432


>gi|195573463|ref|XP_002104713.1| GD18297 [Drosophila simulans]
 gi|194200640|gb|EDX14216.1| GD18297 [Drosophila simulans]
          Length = 493

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 171/478 (35%), Positives = 261/478 (54%), Gaps = 52/478 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGR-ILDK 63
           TI+++S+G +   +S+IR+SGP   +    I   K+  P  R+A L+ F+    + ++D+
Sbjct: 24  TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYEPKARQAYLKSFYHPASKEMIDR 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGEDS EF VHG +AV+  +L+ L K+  LR A PGEF++RAF  GK+
Sbjct: 84  GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L+ LY  W  +L    + +EA +DF+EEE 
Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  +K +I  H+S  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 204 IEGGIILQLGKELKAVKLEIREHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVTD  GTTRD++    +  GY V  SDTAG+R  T D +E+EG++R    +  +DLI
Sbjct: 264 VSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKNCLVQSDLI 323

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI- 361
           LLL E    K I+   + D +     +     Y  E D  +   +G+ L+ + NK  ++ 
Sbjct: 324 LLLAE---AKNIAHLTHDDAV-----APFVDNYLGELDIPLDMCSGKRLQLVANKTDTLT 375

Query: 362 ---------LSN-------KFKKLPFSIPSHKRHLYHL-----------------SQTVR 388
                    LSN       K  K+P  + S ++ L  L                  Q  R
Sbjct: 376 EEEHQQLDKLSNVLAISCHKPDKMPVLLGSLEKQLQELCGEPRAENPRITNTRYRQQLER 435

Query: 389 YLEMASLNEKDCGLD------IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +E   +  +D   D      I A  LR +   + +ITG +  E +LD++F  FCIGK
Sbjct: 436 CIENIDIFLRDYRPDVYPDMAIAASKLRNSVRCIERITGHISCEDILDVVFKDFCIGK 493


>gi|300719145|ref|YP_003743948.1| tRNA modification GTPase [Erwinia billingiae Eb661]
 gi|299064981|emb|CAX62101.1| tRNA modification GTPase [Erwinia billingiae Eb661]
          Length = 454

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 167/460 (36%), Positives = 250/460 (54%), Gaps = 26/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  ETI A +T      + I+R+SG    +V + +  K  P PR A    F   DG+ 
Sbjct: 1   MSH-SETIVAQATPPGRGGVGILRISGSKAAEVAQALLGKL-PKPRYADYLPFRDTDGKA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  MP LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVAMPGLRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S      ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSLRVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLEQVIADLDGVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQAD 297

Query: 301 LILLL-----------KEINSKKEISFPKNIDFIFIGTKSDL---YSTYTEEYDH---LI 343
            +L +            EI        P  +    +  K+D+       TE   H    +
Sbjct: 298 RVLFMVDGTTTGATEPAEIWPDFIARLPATLPITVVRNKADVTGEAQGLTEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402
           S+ TG+G++ L N +K  +      +     + +RHL  L     +L      E+  G  
Sbjct: 358 SARTGDGIDVLRNHLKESMGFS-GNMEGGFLARRRHLQALELAATHLLQG--REQLLGAR 414

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 415 AGELLAEELRVAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|119773150|ref|YP_925890.1| tRNA modification GTPase TrmE [Shewanella amazonensis SB2B]
 gi|166234819|sp|A1S1G4|MNME_SHEAM RecName: Full=tRNA modification GTPase mnmE
 gi|119765650|gb|ABL98220.1| tRNA modification GTPase TrmE [Shewanella amazonensis SB2B]
          Length = 453

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 251/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P PR A    F   DG ++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGKLASDVAHTLLGHL-PKPRYADFCDFKAADGSVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ ++  + K+  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALFFKGPNSFTGEDVLELQGHGGQVVMDMLIRAVLKVKGVRIARPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + ++  + GE S+     +DK+T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALHSLQGEFSTQVHTLVDKITNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  + + +    +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIAAALYAIIDQLDEVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDEVERIGIERAWSEIASADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLY-----STYTEEYD-HLISSFTG 348
            +      +             PK +    +  K+DL      +T  + Y  + IS+ TG
Sbjct: 302 VDGTDTAAVDPHEIWPDFIDRLPKAMGVTVVRNKADLTGEPLEATEEQGYSVYRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G++ L   +KS++  +   L     + +RHL  L Q   +L++  +  E     +++AE
Sbjct: 362 LGVDALKQHLKSLMGYQ-SNLEGGFIARRRHLEALEQASEHLQLGKVQLEVYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRMAQQALSEITGEFTSDDLLGKIFSSFCIGK 453


>gi|326569041|gb|EGE19110.1| tRNA modification GTPase TrmE [Moraxella catarrhalis BC1]
          Length = 466

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 170/464 (36%), Positives = 262/464 (56%), Gaps = 37/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG   +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   + N +  +   I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LSDGIIENKLTEILLGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307

Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342
           ++ ++ + ++    +                 I +  KSDL         S  T+    L
Sbjct: 308 DLTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLVSKPVLQVSCETKSVPKL 367

Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396
             +S  TGEGL+ELI     IL+ K  F     S+ +  RHL  L++   Y   A   L 
Sbjct: 368 VYVSCETGEGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G +++AE+LR +  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 424 IYHAG-ELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466


>gi|118387767|ref|XP_001026986.1| small GTP-binding protein domain containing protein [Tetrahymena
           thermophila]
 gi|89308756|gb|EAS06744.1| small GTP-binding protein domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 550

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 165/532 (31%), Positives = 273/532 (51%), Gaps = 98/532 (18%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-----RKASLRYFFGLD 57
           H  + I+A+++G + + +SIIR+SG +C Q  + + +  +          + ++ +  L 
Sbjct: 23  HFSDNIYAIASGNVKAGVSIIRISGSNCLQAGQMLVQNAQQRQLIKGMNNSQVQDYLNLK 82

Query: 58  GRI------------------------------LDKGLLIVFPSPESFTGEDSAEFHVHG 87
            R                               +D+G+ + F  P+S+TGED  E H+HG
Sbjct: 83  NRYAHFKKLYSLIDPTVSPQNQSFQKQDLIYQQIDQGIFMYFQGPKSYTGEDIVEMHIHG 142

Query: 88  GIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSM 147
             A+   +L EL+++ N RLA+PGEF++RA  N K+DLLE E LADL++SETE QR  S 
Sbjct: 143 SRALQKKVLLELSQLNNFRLADPGEFTKRAMINNKLDLLEVEGLADLLNSETESQRVQST 202

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS----SKEVLNDILFLKNDI 203
           +   G+ S +   W  +L    +  EA +DF  ++D   F+    ++E +  ++    DI
Sbjct: 203 QQFLGKSSQILEDWRFQLIRALAHAEAFIDFESDQDDVEFNILGKTQENVQQVI---KDI 259

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           +  +S    GEI+R+G KI I+G  NAGKS+L N LAKKD+AIV++IPGTTRD L++ L+
Sbjct: 260 NEQLSDRNRGEILRDGMKISIIGKPNAGKSTLLNCLAKKDIAIVSEIPGTTRDALSVSLN 319

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE-------------------------- 297
           + G+ + + DTAGIR+T D++E++G+ +    ++                          
Sbjct: 320 ISGFPILLYDTAGIRQTKDVIEEKGVNKALQNIQVLKQIIKLKLQFGKIKRQHARESDLN 379

Query: 298 -----------NADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE--------- 337
                       AD   ++++I    EI        IFI  K D  ++  E         
Sbjct: 380 IWIIDIDDVIKQADGSYIVQDIKEISEILESNQNTLIFI-NKIDKVNSQKEITDITIRDK 438

Query: 338 --EYDHLISSFTGEGLEELINKIKSILSNKF-------KKLPFSIPSHKRHLYHLSQTVR 388
             + D  IS+   + +  L++K+   ++ +             SI +  RH   L + + 
Sbjct: 439 KFKIDGQISAQHNQNINSLLDKLTKKINERLDITDGIMSSGTISIITQTRHRLELQKCLE 498

Query: 389 YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LE+ S N+++  +DI+ E LR A   +G+ITG VDVE++LD++FS+FCIGK
Sbjct: 499 HLEIFSRNKQNLPVDIVCEELRQAVNCIGRITGRVDVEEVLDVLFSEFCIGK 550


>gi|205422392|sp|Q0AE55|MNME_NITEC RecName: Full=tRNA modification GTPase mnmE
          Length = 451

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 171/451 (37%), Positives = 253/451 (56%), Gaps = 20/451 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      I I+R+SG +  Q+ + I  K  P PR A L  F   + +++D+G+
Sbjct: 5   DTIAAIATPPGRGGIGIVRISGTNLEQLAQTILGKL-PDPRHAGLFNFLDQNNQVIDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FPSP S+TGED  E H HGG AV+N +L    ++   RLA PGEF+ RAF N K+DL
Sbjct: 64  VLYFPSPNSYTGEDVLELHGHGGPAVMNLLLTRCLQL-GARLAEPGEFTLRAFLNEKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE +ADLI + T    R ++  + GE SS   Q +  L  +R  +EA LDF EEE + 
Sbjct: 123 AQAEGVADLIEASTANAARCAVRSLHGEFSSAIHQLVSALIDLRVLVEATLDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S   +  +  ++  +   +S  + G +++ G K+V+ G  N GKSSL N LA  ++A
Sbjct: 182 FLQSAHAVEQLASIQTKLEQVLSASRRGNLLQEGIKVVLTGQPNVGKSSLLNRLAGDEIA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+IPGTTRD +   +++EG  + + DTAG+RET DIVE+ GI R +  +E ADL+LLL
Sbjct: 242 IVTEIPGTTRDTIRQSIEIEGIPLHLIDTAGLRETSDIVEQHGIARAYAAIEQADLVLLL 301

Query: 306 KEIN---SKKEIS----FPKNIDFIFIGTKSDLYSTYTE-EYDH-----LISSFTGEGLE 352
            +     +K++ S     PK +  + +  K DL    +  E D       +S  +GEG+E
Sbjct: 302 VDGRYGVTKEDHSVLARLPKELPVLTVHNKIDLSGQLSRIEEDTSGTAIYLSVKSGEGIE 361

Query: 353 ELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENL 409
            L    +K++          +  + +RHL  L      L+ A   L+  D  L+I+AE L
Sbjct: 362 LLRTVLLKTVGWQTNIAGEGAYMARQRHLQALLHAKELLKRAETWLHTADQ-LEILAEEL 420

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           RLA  +L  ITG    + LL  IFS FCIGK
Sbjct: 421 RLAQQALSSITGEFTSDDLLGEIFSNFCIGK 451


>gi|114332120|ref|YP_748342.1| tRNA modification GTPase TrmE [Nitrosomonas eutropha C91]
 gi|114309134|gb|ABI60377.1| tRNA modification GTPase trmE [Nitrosomonas eutropha C91]
          Length = 459

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 171/451 (37%), Positives = 253/451 (56%), Gaps = 20/451 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      I I+R+SG +  Q+ + I  K  P PR A L  F   + +++D+G+
Sbjct: 13  DTIAAIATPPGRGGIGIVRISGTNLEQLAQTILGKL-PDPRHAGLFNFLDQNNQVIDQGI 71

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FPSP S+TGED  E H HGG AV+N +L    ++   RLA PGEF+ RAF N K+DL
Sbjct: 72  VLYFPSPNSYTGEDVLELHGHGGPAVMNLLLTRCLQL-GARLAEPGEFTLRAFLNEKLDL 130

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE +ADLI + T    R ++  + GE SS   Q +  L  +R  +EA LDF EEE + 
Sbjct: 131 AQAEGVADLIEASTANAARCAVRSLHGEFSSAIHQLVSALIDLRVLVEATLDFPEEE-ID 189

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S   +  +  ++  +   +S  + G +++ G K+V+ G  N GKSSL N LA  ++A
Sbjct: 190 FLQSAHAVEQLASIQTKLEQVLSASRRGNLLQEGIKVVLTGQPNVGKSSLLNRLAGDEIA 249

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+IPGTTRD +   +++EG  + + DTAG+RET DIVE+ GI R +  +E ADL+LLL
Sbjct: 250 IVTEIPGTTRDTIRQSIEIEGIPLHLIDTAGLRETSDIVEQHGIARAYAAIEQADLVLLL 309

Query: 306 KEIN---SKKEIS----FPKNIDFIFIGTKSDLYSTYTE-EYDH-----LISSFTGEGLE 352
            +     +K++ S     PK +  + +  K DL    +  E D       +S  +GEG+E
Sbjct: 310 VDGRYGVTKEDHSVLARLPKELPVLTVHNKIDLSGQLSRIEEDTSGTAIYLSVKSGEGIE 369

Query: 353 ELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENL 409
            L    +K++          +  + +RHL  L      L+ A   L+  D  L+I+AE L
Sbjct: 370 LLRTVLLKTVGWQTNIAGEGAYMARQRHLQALLHAKELLKRAETWLHTAD-QLEILAEEL 428

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           RLA  +L  ITG    + LL  IFS FCIGK
Sbjct: 429 RLAQQALSSITGEFTSDDLLGEIFSNFCIGK 459


>gi|254452743|ref|ZP_05066180.1| tRNA modification GTPase TrmE [Octadecabacter antarcticus 238]
 gi|198267149|gb|EDY91419.1| tRNA modification GTPase TrmE [Octadecabacter antarcticus 238]
          Length = 428

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 163/437 (37%), Positives = 242/437 (55%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T A  + +SIIR+SGP   + C  +        R+  L      DG ++D+  
Sbjct: 2   DTIFALATAAGKAGVSIIRVSGPDALKSCATMGAVLGDQDRR--LVKLASADGSLIDQAF 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I F    SFTGE   E   HG  A+V  +L+ L  + NLRLA PGEF+RRA ENG +DL
Sbjct: 60  AISFAPRRSFTGEQVVELQTHGSPAIVAAVLKRLGGL-NLRLAEPGEFTRRAMENGVLDL 118

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QRR ++    G L  L   W   L    + +EA +DF +E DV 
Sbjct: 119 AQVEGLADLIDAETESQRRQAVRVFQGALGDLASGWRVSLVRAAALLEATIDFVDE-DVP 177

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                EV   I  +  ++    +  ++ E +R+G+++ ++G  N+GKS+L N LA ++ A
Sbjct: 178 VDVYPEVRGLIDIVTKEVRYEAAGVRVRERVRDGFEVALVGPPNSGKSTLLNRLAGREAA 237

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +DI GTTRDV+ + +DL+G  V I DTAG+R++DD++E  GI R       AD+ + L
Sbjct: 238 ITSDIAGTTRDVIEVKMDLDGLPVTILDTAGLRDSDDVLEGIGIARGKDRASAADVRVHL 297

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E  SK        +D I++ +K+DL     E     +S  TG G++ L+++I S L  +
Sbjct: 298 MENLSKNPAQSGFGLD-IYVKSKADLDK---EPVKDAVSGSTGYGMDRLLDQISSHLRQQ 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCV 423
                  + +  RH   L      L+  +  L+  D  +D++AE+LR+A  SL  + G V
Sbjct: 354 LAG--AGVATRTRHQRALEAAAVALDAVTLGLDVDDMPVDLLAEDLRIAIRSLDSLIGRV 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE +L  IFS FCIGK
Sbjct: 412 DVENVLGEIFSSFCIGK 428


>gi|260441411|ref|ZP_05795227.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae DGI2]
 gi|291044771|ref|ZP_06570480.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae DGI2]
 gi|291011665|gb|EFE03661.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae DGI2]
          Length = 448

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 253/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PEPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI +      RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAALDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K  +   + P ++  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A L    CG   +++
Sbjct: 358 GDGLDALKRTLLCEAGWQGESEGLFL-ARTRHVNALKAAQEELSLAVL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|240114777|ref|ZP_04728839.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID18]
 gi|268600426|ref|ZP_06134593.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID18]
 gi|268584557|gb|EEZ49233.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID18]
          Length = 448

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 253/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PEPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI +      RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEGLITLRMLVEAALDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K  +   + P ++  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A L    CG   +++
Sbjct: 358 GDGLDALKRTLLCEAGWQGESEGLFL-ARTRHVNALKAAQEELSLAVL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|145630099|ref|ZP_01785881.1| tRNA modification GTPase [Haemophilus influenzae R3021]
 gi|144984380|gb|EDJ91803.1| tRNA modification GTPase [Haemophilus influenzae R3021]
          Length = 452

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 166/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   D  ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADSTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S      +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNTLVDSVIYLRTYVEASIDFPDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N + +  S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLENVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
                      L ++ S+     P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESVDLTKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGIEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|269140891|ref|YP_003297592.1| hypothetical protein ETAE_3550 [Edwardsiella tarda EIB202]
 gi|267986552|gb|ACY86381.1| hypothetical protein ETAE_3550 [Edwardsiella tarda EIB202]
 gi|304560649|gb|ADM43313.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Edwardsiella tarda
           FL6-60]
          Length = 455

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 164/462 (35%), Positives = 250/462 (54%), Gaps = 29/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI A +T      + I+R+SGP   Q        K P PR A    F   DG +
Sbjct: 1   MISSSDTIVAQATAPGRGGVGILRVSGPQA-QAVALALLGKLPKPRYADYLPFRDHDGTM 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ + ++P LR+A PGEFS RAF N
Sbjct: 60  LDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILQLPGLRIARPGEFSERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   Q ++ L H+R ++EA +DF +
Sbjct: 120 DKMDLAQAEAIADLIDASSEQAARSAVNSLQGVFSARIHQLVESLIHLRIYVEAAIDFPD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  +V   +  + + ++   ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 180 EE-IDFLSDGKVEAQLNAVMDSLAGVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD
Sbjct: 239 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIARAWQEIEQAD 298

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDHL---I 343
            +L + +  +                 P ++    +  K+D+       ++   H    +
Sbjct: 299 RVLFMVDGTTTDATDPAAIWPDFIARLPASLPITVVRNKADVTGEPLGISDGDGHTLVRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402
           S+ TG G++ L + +K  +      L     + +RHL  L Q   +L+      KD  L 
Sbjct: 359 SARTGAGVDVLRDHLKRSMGFD-TSLEGGFLARRRHLQALDQAALHLQQG----KDQLLG 413

Query: 403 ----DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +++AE LRLA  SL +ITG    + LL  IF+ FCIGK
Sbjct: 414 AMAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|221135459|ref|ZP_03561762.1| tRNA modification GTPase TrmE [Glaciecola sp. HTCC2999]
          Length = 458

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 165/463 (35%), Positives = 254/463 (54%), Gaps = 37/463 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           ++ETI A +T      + IIR+SG     +   I     P PR A    F   DG +LD+
Sbjct: 7   QQETIVAQATAIGKGGVGIIRVSGADATAIAIAILGHC-PAPRHAYYGNFHDNDGTVLDQ 65

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  +++ +++ + K PN+RLA PGEFS RAF N K+
Sbjct: 66  GIALYFPNPNSFTGEDVLELQGHGGQIIMDMLIQAILKQPNVRLARPGEFSERAFLNDKL 125

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + ++   R ++  + GE S      ++++ H+R ++EA +DF EEE 
Sbjct: 126 DLAQAEAIADLIDATSQQAARSALRSLQGEFSQRIHTLVEEIIHLRMYVEAAIDFPEEE- 184

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  +V  D+  +   ++    Q K G I+R G ++VI G  NAGKSSL NAL+ +D
Sbjct: 185 IDFLSDGKVQGDLQHIVETLALVQQQAKQGTILREGMQVVIAGRPNAGKSSLLNALSGRD 244

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL+  + ++G  + I DTAG+R++ D+VE+ GI+R +  + +AD +L
Sbjct: 245 AAIVTEIAGTTRDVLSEHIHIDGMPLHIIDTAGLRDSPDVVEQIGIERAWQAINDADRVL 304

Query: 304 LL-----------KEINSKKEISFPKNIDFIFIGTKSDL------------YSTYTEEYD 340
            +            +I  +     P N+    I  K+DL            Y T+T    
Sbjct: 305 FMVDSTESDSSDPHQIWPEFMAKLPDNMGVTIIKNKADLSGQQIGYDNNHGYPTFT---- 360

Query: 341 HLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNE 397
             IS+    G+E +   +K  +  N   +  F   + +RH+  +     +L    + L E
Sbjct: 361 --ISAANKIGIELVSAHLKDCMGFNTTSEGQFI--ARRRHVLAIETAANHLHTGKSQLEE 416

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              G +++AE LRLA ++L +ITG    + LL  IFS FCIGK
Sbjct: 417 HFAG-ELLAEELRLAQLALNEITGEFSSDDLLGKIFSSFCIGK 458


>gi|218767437|ref|YP_002341949.1| tRNA modification GTPase TrmE [Neisseria meningitidis Z2491]
 gi|14195278|sp|Q9JWB7|MNME_NEIMA RecName: Full=tRNA modification GTPase mnmE
 gi|121051445|emb|CAM07738.1| probable thiophene and furan oxidation protein [Neisseria
           meningitidis Z2491]
 gi|319409699|emb|CBY90002.1| tRNA modification GTPase TrmE [Neisseria meningitidis WUE 2594]
          Length = 448

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PKPRVATYADFTDEDGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRAILDALPLELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A+L    CG   +++
Sbjct: 358 GDGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|329118565|ref|ZP_08247269.1| tRNA modification GTPase TrmE [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465300|gb|EGF11581.1| tRNA modification GTPase TrmE [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 454

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 165/461 (35%), Positives = 250/461 (54%), Gaps = 28/461 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TI AV+T      + +IR+SG     + + I   K P PR A    F+  + R 
Sbjct: 1   MSATPQTIAAVATAPGRGGVGVIRISGKHLLPLAQQISGGKTPQPRLALYTDFYDAEKRT 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GL++ F +P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 61  IDSGLMLYFAAPASFTGEDVIELQGHGGPVVMQMLLSRCLEL-GARLAEPGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + ++   R+++  + G  S      +D L  +R  +EA LDF E
Sbjct: 120 NKLDLAQAESVADLIDASSQSAARMAVRSLKGAFSQHIHALVDDLITLRMLVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+      +    +  L+  + + ++Q + G ++R G  +V++G  N GKSSL NALA
Sbjct: 180 E-DIDFLEEADARGKLENLQGRLKAVLAQAQQGAVLREGMNVVLVGAPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D+AIVTDI GTTRD +   + L+G  V I+DTAG+R+TDD VEK GI+R+   +  AD
Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHITDTAGLRDTDDTVEKIGIERSGKALAQAD 298

Query: 301 LILLL----KEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHL----------- 342
           + L+L    + +N K      + P N+  I +  K DL     E  D L           
Sbjct: 299 VALILIDPAEGLNQKTRDILAALPGNLKKIEVHNKIDLSGGTPEFSDVLCSESGADTLIR 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG- 401
           +S+ TG GL+ L   +   +  + +     + + +RH   L      LE A+     CG 
Sbjct: 359 LSAKTGAGLDLLKRALLQQIGWQGESEGLFL-ARRRHTAALEAAQTELEHAA----RCGN 413

Query: 402 --LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++++AE+LRLA  +  +ITG    + LL +IFS+FCIGK
Sbjct: 414 HQIELLAEHLRLAQAACSEITGEFTADDLLGVIFSRFCIGK 454


>gi|198453278|ref|XP_002137635.1| GA27334 [Drosophila pseudoobscura pseudoobscura]
 gi|198132291|gb|EDY68193.1| GA27334 [Drosophila pseudoobscura pseudoobscura]
          Length = 493

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 168/474 (35%), Positives = 265/474 (55%), Gaps = 44/474 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFF-GLDGRILDK 63
           TI+++S+G +   +S+IR+SGP   +    I  C   +P  R+A L+ FF  +   ++D+
Sbjct: 24  TIYSLSSGHVKCGVSVIRVSGPQTKRALRAIVGCNDYEPKARQAYLKSFFHPISKEMIDR 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGED+ EF VHG +AV+  +L+ L ++  LR A PGEF++RAF  GK+
Sbjct: 84  GLLLWFPGPASFTGEDACEFQVHGSLAVIAAMLDALGRLDGLRPAEPGEFTKRAFFGGKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L  LY +W  +L    + +EA +DF+EEE 
Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALGRLYNKWRKRLIRCAAHLEAYIDFAEEEQ 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  ++ +I +H++  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 204 IEGGVILQLTKELKAVRGEIRNHLNDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVT+  GTTRD++    +  GY V  SDTAG+R  T D +E+EG+ R    +  +DLI
Sbjct: 264 VSIVTEQAGTTRDIIETMHNFGGYPVIFSDTAGLRRNTADSIEREGMARAKKCLAESDLI 323

Query: 303 LLLKEINSKKEISFPKNIDFIF------IGTKSDLYSTYTEEYDHLISSFTGE-GLEEL- 354
           LLL +  + +E+   + +          +   SDL S   E+   L+++ T    LEE  
Sbjct: 324 LLLTDAMAVRELDSNETVAGYVESYLNELDIASDLCS---EKRVQLVANKTDTLSLEECH 380

Query: 355 -INKIKSILSNKFKKLPFSIPS-------------------HKR--HLYHLSQTVRYLEM 392
            ++K+ SILS    K P ++ +                   H R  +  +  Q  R +E 
Sbjct: 381 RLDKLSSILSISCHK-PANMATFLNALEQQLQELCGTPRAEHPRITNTRYRQQLERCIEN 439

Query: 393 ASLNEKDCGLD------IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +  +D   D      I A  LR +   + +ITG V  E +LD++F  FCIGK
Sbjct: 440 IDIFLRDYKPDVFPDMAIAAAKLRNSVRCIERITGHVSCEDILDVVFKDFCIGK 493


>gi|292493916|ref|YP_003529355.1| tRNA modification GTPase TrmE [Nitrosococcus halophilus Nc4]
 gi|291582511|gb|ADE16968.1| tRNA modification GTPase TrmE [Nitrosococcus halophilus Nc4]
          Length = 458

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 167/451 (37%), Positives = 252/451 (55%), Gaps = 22/451 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      I ++R+SGP C QV + I  +  P PR A+   F   +G  +D+GL
Sbjct: 14  DTIAAIATPPGRGGIGVVRVSGPLCRQVAKHITGRLPP-PRYAAFSRFRDGEGETIDRGL 72

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FPSP SFTGED  E   HGG  V++ +L  + ++  +RLA PGEFS RAF N KIDL
Sbjct: 73  ALYFPSPHSFTGEDVLELQGHGGPVVMDWLLSCVLQL-GVRLARPGEFSERAFLNNKIDL 131

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED-- 183
            +AE++ADLI S +E   R ++  + GE S+      D+L  +R  +EAD+DFS+E+   
Sbjct: 132 AQAEAIADLIESASEQAARSALRSLHGEFSAQIQDLRDQLIELRCLVEADIDFSDEDIDF 191

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++  +  E L ++  +   I     QG L   +R G ++V++G  N GKSSL N LA  +
Sbjct: 192 IEQGAVAERLQELQSILRRIHRSARQGAL---LREGIRVVLVGRPNVGKSSLHNRLAGFE 248

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTD+PGTTRD+L   + ++G  +++SDTAG+ ++ DI+E+EG++RT  E  NAD +L
Sbjct: 249 AAIVTDVPGTTRDLLREHITIDGLPIRLSDTAGLHDSMDIIEQEGMRRTREEFTNADHVL 308

Query: 304 L-------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEG 350
           L       L E+        P N+    I  K DL     E  +        +S  TG G
Sbjct: 309 LIADDQVGLTELEQSILGELPDNVSHTLILNKIDLSGASAERREDSQRVVLRLSVLTGAG 368

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAENL 409
           ++ L+ ++K       +   + + + +RHL  L +    +  A    K+ G  +++AE L
Sbjct: 369 MDLLLQRLKECAGFDGEGEGYFL-ARRRHLEALQRAGAAVAAAGEILKEEGPEEMLAEEL 427

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R A  +L +ITG    + LL  IFS FCIGK
Sbjct: 428 RQAQNALAEITGEYRSDDLLGEIFSTFCIGK 458


>gi|238921763|ref|YP_002935278.1| tRNA modification GTPase TrmE [Edwardsiella ictaluri 93-146]
 gi|238871332|gb|ACR71043.1| probable tRNA modification GTPase TrmE, putative [Edwardsiella
           ictaluri 93-146]
          Length = 455

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 165/462 (35%), Positives = 251/462 (54%), Gaps = 29/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI A +T      + I+R+SGP   Q        K P PR A    F   DG  
Sbjct: 1   MISSSDTIVAQATAPGRGGVGILRVSGPQA-QAVAMALLGKLPKPRYADYLPFRDHDGTP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ + ++P LR+A PGEFS RAF N
Sbjct: 60  LDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILQLPELRIARPGEFSERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   Q ++ L H+R ++EA +DF +
Sbjct: 120 DKMDLAQAEAIADLIDASSEQAARSAVNSLQGVFSARIHQLVESLIHLRIYVEAAIDFPD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  +V   +  + ++++   ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 180 EE-IDFLSDGKVEAHLNAVMDELAGVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 239 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIERAD 298

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD---HL---I 343
            +L + +  +                 P ++    +  K+D+        D   H    +
Sbjct: 299 RVLFMVDGTTTDATDPAAIWPDFIARLPASLPITVVRNKADVTGETLGISDCDGHTLVRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402
           S+ TG G++ L + +K  +     +L     + +RHL  L Q   +L+      KD  L 
Sbjct: 359 SARTGAGVDVLRDHLKRSMGFD-TRLEGGFLARRRHLQALDQAALHLQQG----KDQLLG 413

Query: 403 ----DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +++AE LRLA  SL +ITG    + LL  IF+ FCIGK
Sbjct: 414 AMAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|326573502|gb|EGE23468.1| tRNA modification GTPase TrmE [Moraxella catarrhalis O35E]
          Length = 466

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 169/464 (36%), Positives = 262/464 (56%), Gaps = 37/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG   +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   + N +  + + I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307

Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342
           ++ ++ + ++    +                 I +  KSDL         S  T+    L
Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLISKPVLQVSCETKSAPKL 367

Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396
             +S  TG GL+ELI     IL+ K  F     S+ +  RHL  L++   Y   A   L 
Sbjct: 368 VYVSCETGVGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G +++AE+LR +  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 424 IYHAG-ELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466


>gi|15606214|ref|NP_213591.1| tRNA modification GTPase TrmE [Aquifex aeolicus VF5]
 gi|6647876|sp|O67030|MNME_AQUAE RecName: Full=tRNA modification GTPase mnmE
 gi|2983408|gb|AAC06992.1| thiophene and furan oxidation protein [Aquifex aeolicus VF5]
          Length = 448

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 175/453 (38%), Positives = 261/453 (57%), Gaps = 23/453 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           +E I A++T    SAI I+RLSG      V +F   K++  PR A     +   G  LD+
Sbjct: 2   REPIVAIATPYGESAIGIVRLSGKGVLDLVKKFFKTKREIKPRYAHFGVLYDDKGEELDE 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+LI + +P S+TGED  E ++HG   ++   LE L      RLA PGEF++RAF NGK+
Sbjct: 62  GVLIYYKAPHSYTGEDMVELNLHGNPRILKRALE-LFVNAGARLAEPGEFTKRAFLNGKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++A+LIS++TE+ R+++++ + GELS       + L  + +++EAD++F+EE D
Sbjct: 121 DLTQAEAVAELISAKTELARKVALKQLHGELSKHIRPLRETLLELLAYVEADIEFAEE-D 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   + ++V+  +  +   I+  +   K G+ IR G K+ I+G  N GKSSLFNAL K++
Sbjct: 180 IPTLTKEQVIQMVDKVIEGINELLKTAKTGKFIREGVKLAIVGRPNVGKSSLFNALLKEE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRD +   L ++G  V++ DTAGIRET D+VE+ G++R+  +V+ ADLIL
Sbjct: 240 RAIVTDIAGTTRDFIEETLQIKGVPVRLVDTAGIRETKDLVERIGVERSKQKVKEADLIL 299

Query: 304 LLKEINSKKEISFP--------KNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEG 350
            +  I++ +EI+          K  D I +  K DL        +  E    +S+  G G
Sbjct: 300 FV--IDASQEITEEDLRIYEEIKEKDHIVVANKVDLGIRANLEKFKGEKIVKVSALKGTG 357

Query: 351 LEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAE 407
           LEEL  +I K + +N  + +   I    RH   L +    LE       EKD   +I   
Sbjct: 358 LEELSEEILKKVGANLEESVNIYISV--RHETLLKKAKEVLERFKEEFREKDISPEIAML 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LR AS  LG+I G +  E LL  IFS FCIGK
Sbjct: 416 DLREASDYLGEILGEITTEDLLGKIFSTFCIGK 448


>gi|192361438|ref|YP_001984273.1| tRNA modification GTPase TrmE [Cellvibrio japonicus Ueda107]
 gi|190687603|gb|ACE85281.1| tRNA modification GTPase TrmE [Cellvibrio japonicus Ueda107]
          Length = 455

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 171/462 (37%), Positives = 259/462 (56%), Gaps = 29/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGR 59
           MN   +TI A++T      + I+R+SGP    + E +     P  PR A    F    G 
Sbjct: 1   MNPNTDTIAAIATATGRGGVGIVRISGPKARFIAERLLGI--PLQPRHAHFCDFRSHSGD 58

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+G+ + FP+P SFTGED  E   HGG  +++ +L E+ ++  +RLA PGEFS RAF 
Sbjct: 59  TLDQGIALFFPNPHSFTGEDVLELQGHGGPVILDLLLREILQL-GVRLARPGEFSERAFL 117

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N K+DL +AE++ADLI + TE   R ++  + G  S      ++ L H+R ++EA +DF 
Sbjct: 118 NDKLDLAQAEAIADLIDATTEQAARNALHSLQGAFSKRIQDLVESLIHLRIYVEASIDFP 177

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EEE +   S  +V  D+  + + + S   + + G ++R+G ++VI G  NAGKSSL NAL
Sbjct: 178 EEE-IDFLSDGKVARDLDDICHRLDSVFKEARQGALVRDGMRVVIAGRPNAGKSSLLNAL 236

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           + ++ AIVT I GTTRDVL   + +EG  + I DTAG+R++ D VE+ GI+R + E++ A
Sbjct: 237 SGRESAIVTPIEGTTRDVLREHIHIEGMPLHIIDTAGLRDSPDEVEQIGIQRAWSEIQQA 296

Query: 300 DLILLLKEINSKKEIS----FPKNID-------FIFIGTKSDLYSTY------TEEYDHL 342
           D +LLL +     E      +P+ +D          +  K DL          T   D+L
Sbjct: 297 DRVLLLVDSRHTAETDPRLIWPEFVDKLDDPHKITLVRNKIDLSGEQAGLFENTRGQDYL 356

Query: 343 -ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEK 398
            IS+ TG G++ L + +K+I+  N   +  F+  + +RHL  L +   +L    A L   
Sbjct: 357 GISAATGSGMDALKDHLKAIVGFNASGEGGFT--ARRRHLDALERAQHFLNAGQAQLQGF 414

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 415 AAG-ELLAEDLRQAQHALGEITGEFTPDDLLGRIFSSFCIGK 455


>gi|238759577|ref|ZP_04620739.1| tRNA modification GTPase mnmE [Yersinia aldovae ATCC 35236]
 gi|238702236|gb|EEP94791.1| tRNA modification GTPase mnmE [Yersinia aldovae ATCC 35236]
          Length = 454

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 248/455 (54%), Gaps = 25/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +   V + +  K  P PR A    F  +DG  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAAATVAQAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 64  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPELRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  ++    ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEGQLNGVMAELEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAGDEVERIGIERAWNEIEQADRVLFM 302

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348
            +  +                 P  +    +  K+D+       TE   H    +S+ TG
Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKF-KKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           EG++ L N +K  LS  F         +  RHL  L    ++L      L     G +++
Sbjct: 363 EGIDLLRNHLK--LSMGFTSNTEGGFLARSRHLQALEAAAQHLVQGHEQLVSAYAG-ELL 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 420 AEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|238793137|ref|ZP_04636765.1| tRNA modification GTPase mnmE [Yersinia intermedia ATCC 29909]
 gi|238727510|gb|EEQ19036.1| tRNA modification GTPase mnmE [Yersinia intermedia ATCC 29909]
          Length = 454

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 164/454 (36%), Positives = 247/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +  +V + +  K  P PR A    F   DG  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAAAEVAQAVLGKL-PKPRYADYLPFKDTDGSTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 64  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSVKIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFM 302

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348
            +  +                 P  +    +  K+D+       TE   H    +S+ TG
Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPSTLPITVVRNKADVTGESLGLTEVNGHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L + +K  +            + +RHL  L    ++L      L     G +++A
Sbjct: 363 EGIDLLRSHLKQSMGFT-SNTEGGFLARRRHLQALETAAQHLVQGHEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|195331616|ref|XP_002032497.1| GM23491 [Drosophila sechellia]
 gi|194121440|gb|EDW43483.1| GM23491 [Drosophila sechellia]
          Length = 493

 Score =  262 bits (670), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 165/478 (34%), Positives = 258/478 (53%), Gaps = 52/478 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGR-ILDK 63
           TI+++S+G +   +S+IR+SGP   +    I   K+  P  R+A L+ F+    + ++D+
Sbjct: 24  TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIIANKEYEPKARQAYLKSFYHPASKEMIDR 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGEDS EF VHG +AV+  +L+ L K+  LR A PGEF++RAF  GK+
Sbjct: 84  GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L+ LY  W  +L    + +EA +DF+EEE 
Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  +K +I  H+S  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 204 IEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCRRS 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVTD  GTTRD++    +  GY V  SDTAG+R  T D +E+EG++R    +  +DLI
Sbjct: 264 VSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKNCLVQSDLI 323

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           LLL E     +++    +        +    +Y  E D  +   +G+ L+ + NK  ++ 
Sbjct: 324 LLLAEAKHIAQLTHDDAV--------APYVDSYLGELDIPLDMCSGKRLQLVANKTDTLT 375

Query: 363 SNKFKKLP-----FSIPSHK------------RHLYHL-----------------SQTVR 388
             + ++L       +I  HK            + L  L                  Q  R
Sbjct: 376 EEEHQQLDKLSNVLAISCHKPDKMAVFLGSLEKQLQELCGEPRAENPRITNTRYRQQLER 435

Query: 389 YLEMASLNEKDCGLD------IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +E   +  +D   D      I A  LR +   + +ITG +  E +LD++F  FCIGK
Sbjct: 436 CIENIDIFLRDYRPDVYPDMAIAASKLRNSVRCIERITGHISCEDILDVVFKDFCIGK 493


>gi|212712606|ref|ZP_03320734.1| hypothetical protein PROVALCAL_03701 [Providencia alcalifaciens DSM
           30120]
 gi|212684822|gb|EEB44350.1| hypothetical protein PROVALCAL_03701 [Providencia alcalifaciens DSM
           30120]
          Length = 454

 Score =  262 bits (670), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 171/455 (37%), Positives = 250/455 (54%), Gaps = 25/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SGP    V E +  K  P PR A    F   DG +LD+G+
Sbjct: 5   DTIVAQATAPGRGGVGILRVSGPQAALVAETVLGKL-PKPRYADYLPFRDADGSVLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I FP P SFTGED  E   HGG  +++ +L  +  + N+R+ANPGEFS RAF N K+DL
Sbjct: 64  AIYFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTIANIRIANPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M  + G  SS   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+    SQ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEAKLNEVVADLDQVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFM 302

Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-----EYDHL-ISSFTG 348
                      +EI  +     P+ +    I  K+D      E      Y  + +S+   
Sbjct: 303 VDSTTTDATEPQEIWPEFMARLPETLPVTVIRNKADKTGESVEFVADARYPLIRLSAREE 362

Query: 349 EGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           +G++ L + +K  +  N   +  F   + +RHL  L+    +L      L     G +++
Sbjct: 363 KGIDLLRDHLKETMGFNSNTEGGFL--ARRRHLQALNNAATHLAQGYDQLVNARSG-ELL 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 420 AEELRLAQQELSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|308188770|ref|YP_003932901.1| tRNA modification GTPase [Pantoea vagans C9-1]
 gi|308059280|gb|ADO11452.1| tRNA modification GTPase [Pantoea vagans C9-1]
          Length = 454

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 163/459 (35%), Positives = 250/459 (54%), Gaps = 24/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V   +  K  P PR A    F   DG +
Sbjct: 1   MSH-SDTIVAQATPPGRGGVGILRVSGAQAAEVARQLLGKL-PKPRYADYLPFTDSDGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAVRSAVNSLQGAFSTRVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S   +   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGRIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LI 343
            +L + +  +                 P  +    +  K+D+       TE   H    +
Sbjct: 298 RVLFMVDGTTTDATEAAAIWPDFVSRLPPELPITVVRNKADVTGEALGLTEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401
           S+ T EG++ L + +K  +      +     + +RHL  L     +L+   A L     G
Sbjct: 358 SARTSEGVDALRDHLKQSMGFA-GNMEGGFLARRRHLQALELAATHLQQGKAQLLGAQAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 -ELLAEELRVAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|302693689|ref|XP_003036523.1| hypothetical protein SCHCODRAFT_48069 [Schizophyllum commune H4-8]
 gi|300110220|gb|EFJ01621.1| hypothetical protein SCHCODRAFT_48069 [Schizophyllum commune H4-8]
          Length = 520

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 166/465 (35%), Positives = 254/465 (54%), Gaps = 27/465 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQ------VCEFICKKKKPFPRKA-SLRYFF 54
           + +++TI+A+ST      I++IR+SGP   Q      V +   +   P P +A   R   
Sbjct: 57  DAQRKTIYALSTPPGRGGIAVIRISGPDALQAWAKLVVLQGRQQSSLPKPWRAYRCRVVH 116

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                 +D GL I F  P+SFT ED  E HVH G A+V+ +L  ++ +P  R A  GEF+
Sbjct: 117 PSHKEPIDDGLAIYFRGPKSFTTEDVVELHVHSGRAIVSSLLSAISALPFCRPAEAGEFT 176

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF  G++DL +AE L DLI +ETE QRR+++    G   +LY    ++  H  + +EA
Sbjct: 177 KRAFLGGRLDLTQAEGLKDLIDAETEGQRRIALNAARGSNRALYEDLRNRAIHCLAQVEA 236

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF E +D++     +   +   L   +  H++ G+ GEI+R G ++ + G  NAGKSS
Sbjct: 237 LIDFGEGDDIEEGVLDQARTEARELLASLHRHLADGRRGEIVRAGVRLALFGPPNAGKSS 296

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N LA+++ AIVT +PGTTRD+L + LDL G  +++SDTAG+R T D VE  GI+R   
Sbjct: 297 LLNCLAQREAAIVTPVPGTTRDILELGLDLGGLPIRVSDTAGLRATQDEVEAIGIERAKR 356

Query: 295 EVENADL---ILLLKEINSKKEISFPKNID--------FIF----IGTKSDLYSTYTEEY 339
            +E AD+   IL L +      I  P+ +         F+F    + T   L +  T   
Sbjct: 357 AIEGADVALCILSLPDCVRDGGIQVPEYVKTMITPETYFLFNKSDLATPEQLRAAATVPR 416

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYLEMASL 395
             + S  T EG    I+   + L +++     S    + +H RH  HL    R+++ A L
Sbjct: 417 SWVTSLITKEGTSSFIDGFTTELQSRYHLDGVSEDPPLITHARHRVHLESAARFVQ-AFL 475

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D  + + AE LR A+ ++GKI+G +DVE +LD +F+ FCIGK
Sbjct: 476 ESSDEDVIMGAEELRYAAQAIGKISGHIDVEDILDSVFNDFCIGK 520


>gi|71277760|ref|YP_271687.1| tRNA modification GTPase TrmE [Colwellia psychrerythraea 34H]
 gi|123630481|sp|Q47U36|MNME_COLP3 RecName: Full=tRNA modification GTPase mnmE
 gi|71143500|gb|AAZ23973.1| tRNA modification GTPase TrmE [Colwellia psychrerythraea 34H]
          Length = 471

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 164/455 (36%), Positives = 251/455 (55%), Gaps = 37/455 (8%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG----RILDKGLLIVFPSPES 74
            + IIR+SGP    V + I  K  P  RKA    F         ++LD+G+ + F +P S
Sbjct: 21  GVGIIRVSGPEAKNVAQAILGKL-PEVRKAEYLPFLDCTSTDKTQVLDQGIALYFKAPNS 79

Query: 75  FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134
           FTGED  EF  HGG  +++ +L+ +   P + +A PGEFS +AF N K+DL +AE++ADL
Sbjct: 80  FTGEDVIEFQGHGGPVILDMLLKVILAQPKVIMAKPGEFSEQAFLNDKLDLTQAEAIADL 139

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           I+S +E   R ++  + G+ S L  + ++ + H+R ++EA +DF EEE +   + K+++ 
Sbjct: 140 INSSSEQAARSALHSLQGDFSKLVNEMVESIIHLRMYVEAAIDFPEEE-IDFLADKKIVT 198

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           D+  + + +     Q + G IIR G ++VI G  NAGKSSL NAL+ K  AIVTDI GTT
Sbjct: 199 DLKAIISRVEDVRKQAQQGSIIREGMRVVIAGRPNAGKSSLLNALSGKQTAIVTDIAGTT 258

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+R++DD+VEK GI+R + E+  AD +LL+ + +    I
Sbjct: 259 RDVLAEQIHIDGMPLHIIDTAGLRDSDDVVEKIGIERAWQEINQADRVLLMVDASEDHSI 318

Query: 315 ----------------SFPKNIDFIFIGTKSDLYS--------TYTEEYDHLI---SSFT 347
                             P+ I    I  K+D+          T T+   H I   S+ T
Sbjct: 319 LEDDQDIKDFYPEFFAKLPEKIGLTLIRNKADVNDAKTGFTEFTDTDGTQHAIITLSAKT 378

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EKDCGLDII 405
           G+G++ L   +K+I+  +         + +RHL  L  T ++L +  L+  E     +I+
Sbjct: 379 GKGVDSLKEHLKTIMGYQ-GGTEGGFMARRRHLVALENTHQHL-LTGLDQLESYVAGEIL 436

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 437 AEELRICQQELDQITGEFTSDDLLGKIFSSFCIGK 471


>gi|221069752|ref|ZP_03545857.1| tRNA modification GTPase TrmE [Comamonas testosteroni KF-1]
 gi|220714775|gb|EED70143.1| tRNA modification GTPase TrmE [Comamonas testosteroni KF-1]
          Length = 475

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 166/478 (34%), Positives = 251/478 (52%), Gaps = 42/478 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     +   +C ++   PR+A+   F    G  
Sbjct: 2   LPRHNDPIAAIATAPGRGAVGIVRVSGKGLAALVRTLCGRELK-PREATYLPFRDAGGSP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAK---------MPNLRLA 108
           +D GL I FP P S+TGED  E   HGG  V+  +L    E A+         +  LRLA
Sbjct: 61  IDHGLAIYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQSGSEDGRPVLTGLRLA 120

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
            PGEF+ RAF N KIDL +AE++ADLI + TE   R +   +SG  S       D L H+
Sbjct: 121 QPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSQEIHVLRDALVHL 180

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           R  +EA LDF EEE +      +    +  L+  +++ +++   G ++R G K+VI G  
Sbjct: 181 RMLVEATLDFPEEE-IDFLQKADAFGQLERLRAQVTAVLARAHQGALLREGIKVVIAGQP 239

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R++DD VE+ G
Sbjct: 240 NAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSDDEVERIG 299

Query: 289 IKRTFLEVENADLILLLKEINSKKEIS---------------FPKNIDFIFIGTKSDL-- 331
           I R + E+  AD +L L ++   ++                  P  +  I +  K+D+  
Sbjct: 300 IARAWDEIAAADAVLFLHDLTRVEQADYAAADADIARTLQGRLPAQVPVIHVWNKTDMAA 359

Query: 332 ---YSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLS 384
               S +T + +     +S+ TG+GL+ L  ++  +    ++  P  +  +  RH+  L 
Sbjct: 360 ADVQSRHTAQLNAQQIALSARTGDGLDALRKRLLEVAG--WQSAPEGLYLARARHVEALQ 417

Query: 385 QTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +LEM  A L  +   LD++AE LRLA +SL  ITG    + LL +IFS FCIGK
Sbjct: 418 AVDVHLEMADAQLAAQSAHLDLLAEELRLAQLSLNSITGEFSSDDLLGVIFSSFCIGK 475


>gi|260221780|emb|CBA30686.1| tRNA modification GTPase mnmE [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 469

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 168/471 (35%), Positives = 249/471 (52%), Gaps = 34/471 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           ++   + I A++T +   A+ I+RLSG S     + +  K    PR+A+   F    G+ 
Sbjct: 2   LSRHSDPIAAIATASGRGAVGIVRLSGKSLGAFTQALLGKAL-RPREATYLPFPDEKGQP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGG-----------IAVVNGILEELAK---MPNLR 106
           +D GL + FP P SFTGED  E   HGG           +A+ N +  E      +P LR
Sbjct: 61  IDHGLALFFPGPHSFTGEDVLELQAHGGPVVLQLLVARCLALANSVQTEGVSSVLLPGLR 120

Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166
           +A  GEF++RAF N K+DL +AE++ADLI + TE   R + + +SG  S   G   D L 
Sbjct: 121 IAEAGEFTQRAFLNNKLDLAQAEAIADLIDASTEAAARSASQSLSGAFSKEIGILRDALI 180

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
           H+R  +EA LDF EEE +      + +  +  L+  +   +++   G ++R G K+VI G
Sbjct: 181 HLRMLVEATLDFPEEE-IDFLQKADAVGQLQRLQQALQQVLAKATQGALLREGLKVVIAG 239

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+R +DD VEK
Sbjct: 240 QPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQETIQIEGVPLHIIDTAGLRASDDAVEK 299

Query: 287 EGIKRTFLEVENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSDL 331
            GI+R +  +E AD +L L ++     I +               P +I  I +  KSD 
Sbjct: 300 IGIERAWQAIEAADAVLFLHDLTRSSAIEYIAADADIAGAIAEKLPASIPVIHVWNKSDA 359

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            +  T      +S+ TG GL+ L   + +    +  +   +  + +RH+  L    ++L+
Sbjct: 360 ATPETGLEGIFLSAKTGVGLDALRQNLLTAAGWQPAQ-SGAFMARQRHVQALHLVGQHLD 418

Query: 392 MAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           MAS  L      LD++AE LRL   +L  ITG    + LL +IFSKFCIGK
Sbjct: 419 MASELLASGSAALDLLAEELRLGQNALNSITGEFGADDLLGVIFSKFCIGK 469


>gi|153873147|ref|ZP_02001823.1| tRNA modification GTPase [Beggiatoa sp. PS]
 gi|152070386|gb|EDN68176.1| tRNA modification GTPase [Beggiatoa sp. PS]
          Length = 444

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 164/451 (36%), Positives = 257/451 (56%), Gaps = 18/451 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M  +++TI A++T A    I +IR+SGP   ++   +  +  P PR  +   F    G  
Sbjct: 1   MLEQQDTIAALATPAGRGGIGVIRISGPKVPEIARAVLGQL-PKPRYGTFSDFLEPTGEQ 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + FP+P SFTGE   E   HGG  V++ +L+ + K    R+A PGEFS RAF N
Sbjct: 60  IDQGIALYFPAPHSFTGEAVLELQGHGGPVVMDLLLKAVLKY-GARVARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL +AE++ADLI S +    R ++  + GE S      +++L  +RS+IEA +DF +
Sbjct: 119 GKIDLAQAEAIADLIDSASTQAARCALRSLQGEFSHQIHSLVEQLIWLRSYIEAGIDFVD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +  +VL+ +  L + + + + + + G +++ G +IV++G  N GKSSL N+LA
Sbjct: 179 EE-IDLLADGQVLDRMKKLLHGLDTILDKAQQGYLLKEGMRIVLVGEPNVGKSSLLNSLA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT +PGTTRDV+   + + G  + I+DTAG+RET+D+VE EGI+RT L ++ AD
Sbjct: 238 GRETAIVTPLPGTTRDVVRDQIQINGMPLHITDTAGLRETEDLVELEGIRRTKLALKEAD 297

Query: 301 LILLL---KEINSKKEISFPKNID--FIFIGTKSDL---YSTYTEEYDHLISSFTGEGLE 352
           L+++L   +  N     +    +D   + +  K DL    +   EE    +S+ TGEG+E
Sbjct: 298 LVIVLLDDRHSNDSIHANLLAELDKPPLIVRNKIDLSGHRAGMNEEGILYLSAKTGEGIE 357

Query: 353 ELINKIKSILSNKF---KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           +L    K   + K         +  + +RHL  L Q    L  A  +      +++AE L
Sbjct: 358 QL----KDYFTQKMGLHSSAEGTFMARRRHLDALQQAKIALTTALNHAHTYQTELLAEEL 413

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 414 RQAQHALGEITGEFTADDLLGQIFSTFCIGK 444


>gi|300725383|ref|YP_003714722.1| GTPase [Xenorhabdus nematophila ATCC 19061]
 gi|297631939|emb|CBJ92664.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Xenorhabdus nematophila ATCC 19061]
          Length = 454

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 166/457 (36%), Positives = 255/457 (55%), Gaps = 29/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG    +V E +  K  P PR A    F  +DG +LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRISGRKAAEVAEVVLGKL-PKPRYADYLPFRDMDGSVLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED  E   HGG  +++ +L+ +  +  +R+ANPGEFS RAF N K+DL
Sbjct: 64  VLYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTISGVRIANPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M  + G  S    Q ++ LT++R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGTFSHQVHQMVETLTNLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
             S  ++   L++++   +++ S   QG L   +R G K+VI G  NAGKSSL NALA +
Sbjct: 183 FLSDGKIEAKLDEVIAELDNVRSQARQGSL---LREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + + DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYTEEYD----HLI--SS 345
           L + +  +   I             P ++    I  K+D+    T   D     LI  S+
Sbjct: 300 LFMVDSTTTDAIEPAQIWPEFMAKLPASLPVTVIRNKTDMTGEATGVSDVSGYSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403
             G+G++ L + +K  +      +     + +RHL  L+    +L+     L     G +
Sbjct: 360 REGKGIDLLRDHLKETMGFN-SNIEGGFLARRRHLQALNTAADHLQEGHQQLVFARSG-E 417

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 418 LLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|240122615|ref|ZP_04735571.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID332]
 gi|268681207|ref|ZP_06148069.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
           PID332]
 gi|268621491|gb|EEZ53891.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
           PID332]
          Length = 448

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 253/456 (55%), Gaps = 24/456 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C K  P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PEPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI +      RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAALDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +V+IVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVSIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + L+L +    +N K  +   + P ++  I I +KSDL++     +         +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404
           G+GL+ L   +      + +     + +  RH+  L      L +A L    CG   +++
Sbjct: 358 GDGLDALKRTLLCEAGWQGESEGLFL-ARTRHVNALKAAQEELSLAVL----CGNHQIEL 412

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|167519733|ref|XP_001744206.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777292|gb|EDQ90909.1| predicted protein [Monosiga brevicollis MX1]
          Length = 477

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 159/467 (34%), Positives = 256/467 (54%), Gaps = 35/467 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASL-RYFFGLDGRILDKG 64
           T++A+S+    + ++++R+SGP       + + K+  P PR+A++ R    L   +LD+ 
Sbjct: 13  TVYALSSAPGKAGVAVVRISGPEALAAAGQLLGKRALPIPRQATVARLSDPLTDDLLDQA 72

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGED  E H+HG  AVV G+L+ L ++  L  A PGEF++RAF +GK+ 
Sbjct: 73  LVLTFPGPRSFTGEDVVELHLHGSRAVVAGVLDALGRLQGLAPAPPGEFTKRAFAHGKLG 132

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L + E LADLIS+ET  QR+ ++  + G+   L   W  +L H  + +EA +DFSE+E++
Sbjct: 133 LTQVEGLADLISAETTSQRQQALRHLEGDAQKLLLGWRQELLHALALLEAYIDFSEDENI 192

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +       +  +  ++  H++  + G+ +R+G +IV+ G  N GKSSL N   +++ 
Sbjct: 193 EEDAFSSASEKVGHMVEEMRRHVADSRAGQRVRDGVRIVLSGLPNVGKSSLLNYFCRQER 252

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTFLEVENADLI 302
           AIVTDIPGTTRD+LT+DL+L G+ V   DTAGIR  D  D VE+EG++R      NAD+ 
Sbjct: 253 AIVTDIPGTTRDLLTVDLELRGFPVIFVDTAGIRFGDQVDRVEQEGVRRAQEAAANADVR 312

Query: 303 LLLKEINSKKEI------------------------SFPKNIDFIFIGTKSDLYSTYTEE 338
           + L++  + + +                        S P ++  +     +   S    E
Sbjct: 313 ICLQDATNPESLCCSTLKQGGVPCACLHGSAINADQSTPPHLLRVVNKCDAKPLSMELSE 372

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS--HKRHLYHLSQTVRYLEMA--- 393
               +S    + L++L   +   +          +P+    RH  HL+  +  LE A   
Sbjct: 373 GVLSVSCLERKNLDQLTTVLGDTVETLCHTASGEVPTVVRHRHQQHLTAALEALEQALVS 432

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S    DC L  +AE +R A   LG +TG V ++++LDI+FS+FCIGK
Sbjct: 433 SALSADCVL--MAEEMRYALSELGHLTGHVKLDEMLDIVFSEFCIGK 477


>gi|254509080|ref|ZP_05121183.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 16]
 gi|219548013|gb|EED25035.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 16]
          Length = 453

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 166/453 (36%), Positives = 249/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP   +V + +  K    PR A    F   DG  LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPLAEKVAQEVTGKTL-RPRYAEYLPFTSQDGSQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ +++ + ++P +R A PGEFS RAF N K+DL
Sbjct: 63  ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILQIPGIRTARPGEFSERAFLNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + G  S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 AQAEAIADLIDASSEEAAKSALQSLQGAFSQRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++S+   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVAGDLQAIIDNLSAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKS-----DLYSTYTEEYDHL-ISSFTG 348
                 +    KEI        P NI    I  K+     DL   +      + +S+ TG
Sbjct: 302 VDGTTTDATDPKEIWPDFVDRLPDNIGMTVIRNKADQTGEDLGICHVNAPTLIRLSAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           EG+E L + +K  +            + +RHL  L +   +L++     E     +I+AE
Sbjct: 362 EGVESLRSHLKECMGFAGGN-EGGFMARRRHLEALERAAEHLDIGQQQLEGYMAGEILAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRIAQQHLSEITGEFSSDDLLGRIFSSFCIGK 453


>gi|253690652|ref|YP_003019842.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259495843|sp|C6DK97|MNME_PECCP RecName: Full=tRNA modification GTPase mnmE
 gi|251757230|gb|ACT15306.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 454

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 162/454 (35%), Positives = 252/454 (55%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +  +V + +  K  P PR A    F   +G  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAAAEVAQAVLGKL-PKPRHADYLPFRDANGTTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +PN+R+A PGEFS RAF N K+DL
Sbjct: 64  ALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPNVRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSALNSLQGVFSTRVNQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ + +  +  D+ +  ++   G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIESQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFM 302

Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTG 348
                      ++I  +     PK +    +  K+D+        D   H    +S+ TG
Sbjct: 303 VDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGIEDVNTHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           +G++ L + +K  +            + +RHL  L    ++L      L     G +++A
Sbjct: 363 DGVDTLRDHLKQSMGFT-SNTEGGFLARRRHLQALELAAQHLIQGKEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|326571815|gb|EGE21821.1| tRNA modification GTPase TrmE [Moraxella catarrhalis BC7]
          Length = 466

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 168/464 (36%), Positives = 261/464 (56%), Gaps = 37/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG   +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAHFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                + N +  + + I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LPDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307

Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342
           ++ ++ + ++    +                 I +  KSDL         S  T+    L
Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLISKPVLQVSCETKSAPKL 367

Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396
             +S  TGEGL+ELI     IL+ K  F     S+ +  RHL  L++   Y   A   L 
Sbjct: 368 VYVSCETGEGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G +++AE+LR +  +LG+I G +  ++LL  IFS FCIGK
Sbjct: 424 IYHAG-ELVAESLRQSQQALGEIIGQMSADELLGKIFSSFCIGK 466


>gi|329297776|ref|ZP_08255112.1| tRNA modification GTPase TrmE [Plautia stali symbiont]
          Length = 454

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 251/462 (54%), Gaps = 30/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V + +  K  P PR A    F   DG +
Sbjct: 1   MSH-SDTIVAQATPPGRGGVGILRISGAKAAEVAQAVLGKL-PKPRYADYLPFNDADGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P++R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPSVRIAQPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S      ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSLYVKALVEALTHLRIYVEAAIDFPD 178

Query: 181 EE-DVQNFSSKEV-LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           EE D  +    EV LN ++   N + +   QG L   +R G K+VI G  NAGKSSL NA
Sbjct: 179 EEIDFLSDGKIEVQLNAVIGDLNGVRAEARQGSL---LREGMKVVIAGRPNAGKSSLLNA 235

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E 
Sbjct: 236 LAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 295

Query: 299 ADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH--- 341
           AD +L + +  +                 P  +    +  K+D+       TE   H   
Sbjct: 296 ADRVLFMVDGTTTDATEANAIWPDFVARLPAALPITVVRNKADMTGETLGLTEVNGHSLI 355

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            +S+ TG G++ L   +K  +      +     + +RHL  L     +L+     E+  G
Sbjct: 356 RLSARTGAGVDTLREHLKQSMGFA-GNMEGGFLARRRHLQALELAATHLQQG--KEQLLG 412

Query: 402 L---DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 413 AWAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|157804128|ref|YP_001492677.1| tRNA modification GTPase TrmE [Rickettsia canadensis str. McKiel]
 gi|166234816|sp|A8EZV9|MNME_RICCK RecName: Full=tRNA modification GTPase mnmE
 gi|157785391|gb|ABV73892.1| tRNA modification GTPase [Rickettsia canadensis str. McKiel]
          Length = 445

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 163/453 (35%), Positives = 256/453 (56%), Gaps = 27/453 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF----FGLDGRIL 61
           ETIFA S+    + +++ R+SGP   +V + +  +K     K+ L Y+    F   G ++
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITFPESGELI 58

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  +++ F SP SFTGED AE + HG  A+   ++  L  +PN+RLA  GEF++RAF N 
Sbjct: 59  DNAMVVYFKSPGSFTGEDVAEIYTHGSKAISIMLINALLNIPNIRLAEAGEFTKRAFLNN 118

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K DL  AE +ADLI++ET MQ R ++    G L  LY  W ++L  I S +EA +DF  +
Sbjct: 119 KFDLTAAEGIADLINAETIMQHRQAIRQAGGALEELYNNWREQLLQIISLLEAYIDFP-D 177

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+ +    +V N    L N+IS++++  + GE++ +G K+ I+G  NAGKSSL N L +
Sbjct: 178 EDIPDSILNKVNNTHTNLINEISNYLNDNRRGELLNSGLKLAIIGPPNAGKSSLLNFLMQ 237

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300
           +D+AIV++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + AD
Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTAD 297

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE----------YDHLISSFTGE- 349
           + +++ +            ID I   T   +      E          Y  L  S     
Sbjct: 298 IKIIMFDAEKLDSSINEGIIDLIDENTIIIINKIDLIEPSKIFLIEDKYKCLRVSIKNNI 357

Query: 350 GLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
            L +++  I++I  N   F + P+   +++RH ++L Q + YL+  +L   D  L +  E
Sbjct: 358 ALNDILKNIENIAENMAGFTETPY--ITNQRHRHYLKQGLTYLKNFTL---DNDLVLATE 412

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++R+    +G ITG ++V ++L  IF  FCIGK
Sbjct: 413 DIRMTVRCIGTITGVINVNEILGEIFKNFCIGK 445


>gi|88860621|ref|ZP_01135258.1| predicted GTPase [Pseudoalteromonas tunicata D2]
 gi|88817216|gb|EAR27034.1| predicted GTPase [Pseudoalteromonas tunicata D2]
          Length = 454

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 166/454 (36%), Positives = 249/454 (54%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +ETI A +T      + IIR+SG     V E +  K  P  R A    F  L G  LD+G
Sbjct: 4   QETIAAQATAPGRGGVGIIRVSGKLARSVAEQLLGKC-PKTRYAEYVPFKALSGDELDQG 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F  P SFTGED  E   HGG  V++ +L+E+ K+ ++RLA PGEFS RAF N K+D
Sbjct: 63  IALFFEGPNSFTGEDVLELQGHGGPVVLDMLLKEICKINDVRLAKPGEFSERAFMNDKLD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI++ +E   + ++  + GE S      ++++ H+R ++EA +DF +EE +
Sbjct: 123 LTQAEAIADLINATSEQAAKSALHSLQGEFSKHISTLVEQVIHLRMYVEAAIDFPDEE-I 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              S  +V  D+  + + +S   +Q K G IIR G ++VI G  NAGKSSL NALA +D 
Sbjct: 182 DFLSDGKVSADLNAIISQLSEVTNQAKQGSIIREGMRVVIAGRPNAGKSSLLNALAGRDA 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R++ DIVE+ GI+R + E++ AD +L 
Sbjct: 242 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDIVEQIGIERAWDEIKQADRVLF 301

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDHLISSFTG-- 348
           + +     +              P N+    I  K DL     +  E ++H + S +   
Sbjct: 302 MLDGTESTDTDPAAIWPEFIDKLPANLGITVIRNKIDLSGEQVSIQEHHNHPVISLSAKN 361

Query: 349 -EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
            +G++ +   +K  +  +         + +RHL  LS    +L+      E     +I+A
Sbjct: 362 NQGIDLVREHLKQCMGYQ-GATEGGFMARRRHLEALSNAAYHLQTGKDQLEMHIAGEILA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLTQQFLNEITGEFTSDDLLGKIFSSFCIGK 454


>gi|268593483|ref|ZP_06127704.1| tRNA modification GTPase TrmE [Providencia rettgeri DSM 1131]
 gi|291310904|gb|EFE51357.1| tRNA modification GTPase TrmE [Providencia rettgeri DSM 1131]
          Length = 454

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 170/455 (37%), Positives = 250/455 (54%), Gaps = 25/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SGP   QV E +  K  P PR A    F   +G +LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGPKAAQVAEIVLGKL-PKPRYADYLPFRDEEGSVLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L  +  +  +R+ANPGEFS RAF N K+DL
Sbjct: 64  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTIDGIRIANPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M  + G  SS   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+    SQ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEAKLNEVVADLEQVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADHVLFM 302

Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTG 348
                      +EI  +     P  +    I  K+D+     E  D+       +S+   
Sbjct: 303 VDSTTTNATEPQEIWPEFMARLPDELPVTVIRNKADMTGEPVEFIDNTRYPLIRLSAREE 362

Query: 349 EGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           +G++ L + +K  +  N   +  F   +  RHL  L+    +LE     L     G +++
Sbjct: 363 KGIDLLRDHLKEAIGFNSNTEGGFL--ARSRHLQALNAAAVHLEQGYDQLVNARSG-ELL 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 420 AEELRLAQQELSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|218931079|ref|YP_002348954.1| tRNA modification GTPase TrmE [Yersinia pestis CO92]
 gi|21363009|sp|Q8Z9U2|MNME_YERPE RecName: Full=tRNA modification GTPase mnmE
 gi|115349690|emb|CAL22671.1| putative thiophene and furan oxidation protein [Yersinia pestis
           CO92]
          Length = 454

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 163/454 (35%), Positives = 248/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +  +V   +  K  P PR A    F  +DG  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 64  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE +D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADRVLFM 302

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348
            +  +                 P  +    +  K+D+       T+   H    +S+ TG
Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTKVNGHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L + +K  +            + + HL  L    R+L      L     G +++A
Sbjct: 363 EGIDLLRDHLKQSMGFT-SNTEGGFLARRPHLQALETAARHLIQGHEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|254436182|ref|ZP_05049689.1| tRNA modification GTPase TrmE [Nitrosococcus oceani AFC27]
 gi|207089293|gb|EDZ66565.1| tRNA modification GTPase TrmE [Nitrosococcus oceani AFC27]
          Length = 431

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 160/436 (36%), Positives = 252/436 (57%), Gaps = 20/436 (4%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SGP C Q+ E +  +  P PR A+  +F    G ILD+GL++ FP P SFTGED
Sbjct: 1   MGIVRVSGPFCRQIAEQVTGRVPP-PRYATFCHFRNRYGEILDQGLILYFPGPHSFTGED 59

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG A+++ +L  + ++  +RLA PGEFS RAF N KIDL +AE++ADLI S +
Sbjct: 60  VLELQGHGGPAIMDWLLSSVLQL-GVRLARPGEFSERAFLNNKIDLAQAEAIADLIESAS 118

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E   R ++  + GE S+      ++LT +R  +EA++DFS+E D+       V   +  +
Sbjct: 119 EQAARSALRSLHGEFSAQIQTLREQLTELRCVVEANIDFSDE-DIDFIERGMVAERLKEI 177

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           ++ + S     + G ++R G ++V+ G  N GKSSL N LA  + AIVTD+PGTTRD+L 
Sbjct: 178 QSTLQSIHRSARQGALLREGVRVVLAGRPNVGKSSLHNRLAGFEAAIVTDVPGTTRDLLR 237

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEI 314
            ++ ++G  + +SDTAG+  + D +E+EG++RT  E+ +AD +LL+ +  S     ++ I
Sbjct: 238 ENITIDGLPIHLSDTAGLHNSKDTIEQEGMRRTREELIHADHVLLVADDQSGLTEAEQAI 297

Query: 315 --SFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKIKSILS-NK 365
               P ++ +  I  K DL       ++ L      +S+ TG G++ L  ++K     ++
Sbjct: 298 LDELPDDVTYTLIFNKIDLSGAPAGRWEELQGIALRLSALTGAGMDLLCQRLKECAGFDR 357

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAENLRLASVSLGKITGCVD 424
             +  FS  + +RHL  L +    + +A     D G  +I+AE LR A  +L +ITG   
Sbjct: 358 ESEGCFS--ARRRHLEALQRAGAAVVVARKILGDKGAEEILAEELRQAQNALAEITGEYR 415

Query: 425 VEQLLDIIFSKFCIGK 440
            + LL  IFS FCIGK
Sbjct: 416 SDDLLGEIFSTFCIGK 431


>gi|127514790|ref|YP_001095987.1| tRNA modification GTPase TrmE [Shewanella loihica PV-4]
 gi|166234821|sp|A3QJT0|MNME_SHELP RecName: Full=tRNA modification GTPase mnmE
 gi|126640085|gb|ABO25728.1| tRNA modification GTPase trmE [Shewanella loihica PV-4]
          Length = 453

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 164/454 (36%), Positives = 251/454 (55%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P  R A    F   DG ++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGDKASDVAMAVLGHL-PKVRYADYCDFKAADGAVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ +  +  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALYFKGPNSFTGEDVLELQGHGGQVVLDMLIKRVMDVDGVRIAKPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + ++  + GE S+   + +D++T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALNSLQGEFSTQVHELVDQVTNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +   + S  S  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIAASLGKIITKLDSVQSSAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+E AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWAEIETADQVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDHLI---SSFTG 348
            +  +   +             PKN+    +  K+DL       T+E  H +   S+ TG
Sbjct: 302 VDGTTTDAVDPHDIWPDFIDRLPKNLGVTVVRNKADLTGESLDATDEQGHKVFRLSAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
            G++EL   +KS++  +   L     + +RHL  L     +L +    L     G +++A
Sbjct: 362 SGVDELKAHLKSLMGYQ-SNLEGGFLARRRHLEALELASSHLALGQEQLEVYQAG-ELLA 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 420 EELRMCQLALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|254788525|ref|YP_003075954.1| tRNA modification GTPase TrmE [Teredinibacter turnerae T7901]
 gi|237685930|gb|ACR13194.1| tRNA modification GTPase TrmE [Teredinibacter turnerae T7901]
          Length = 449

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 172/462 (37%), Positives = 256/462 (55%), Gaps = 41/462 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + I+R+SGP C Q+   I     P PR+A    FF  +  +LD+G+
Sbjct: 2   DTIAAIATAPGRGGVGIVRVSGPGCQQIAHRILGLLPP-PREAKYTPFFDRNKNLLDQGI 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F +P SFTGED  EF  HGG  +++ +L E+      RLA PGEFS RAF N K+DL
Sbjct: 61  ALYFSAPNSFTGEDVLEFQGHGGPVILDMLLAEILAA-GARLARPGEFSERAFLNDKLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + ++   + ++  + G  S      +++L H+R ++E+ +DF EEE + 
Sbjct: 120 AQAEAIADLIDASSQQAAKQAINSLQGAFSEQINHLVEELIHLRMYVESAIDFPEEE-ID 178

Query: 186 NFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
             S  +V   L+++L   +DI     QG L   +R G K+VI G  NAGKSSL NALA++
Sbjct: 179 FLSDGKVAAQLDNVLERASDILHTAQQGVL---MREGMKVVIAGRPNAGKSSLLNALAQR 235

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D+AIVTDI GTTRDVL   + ++G  + I DTAG+R   D VE+ GI+R + E++ AD I
Sbjct: 236 DIAIVTDIEGTTRDVLREQIHIDGMPLHIVDTAGLRAATDKVEQIGIERAWQEIDQADRI 295

Query: 303 LLLKEINSKKEIS---------------------FPKNIDFIFIGTKSDLYSTYTEEYDH 341
           LL+ +     ++S                     + K  D  F  T  D  + Y E    
Sbjct: 296 LLMVDSTRLPDLSREDYWQQLSKHQPTLEKVTVIYNKIDDSGF--TLPDTPAVYKEIA-- 351

Query: 342 LISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398
            +S+ TG G++ LI  +KS++   +  +  FS  + +RHL  +   + YL      L   
Sbjct: 352 -LSAKTGAGIDALIAHLKSVMGYQQTGEGGFS--ARRRHLDAIQHALTYLNNGRNQLQLH 408

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             G +++AE+LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 409 AAG-ELLAEDLRLAQDHLSEITGKFTSDDLLGKIFSSFCIGK 449


>gi|290477349|ref|YP_003470270.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Xenorhabdus bovienii SS-2004]
 gi|289176703|emb|CBJ83512.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Xenorhabdus bovienii SS-2004]
          Length = 454

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 165/455 (36%), Positives = 253/455 (55%), Gaps = 25/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SGP   +V E +  K  P PR A    F  +DG +LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRISGPKAAEVAEVVLGKL-PKPRYADYLPFRDVDGTVLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +  +R+ANPGEFS RAF N K+DL
Sbjct: 64  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTISAVRIANPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M  + G  S    Q ++ LT++R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGTFSHQVHQMVEALTNLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  ++    SQ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEARLDEVIEELDHVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFM 302

Query: 306 KEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYT-----EEYDHL-ISSFTG 348
            +  +   +             P ++    I  K+D+    T       Y  + +S+  G
Sbjct: 303 VDSTTTDAVEPAKIWPEFMAKLPASLPVTVIRNKTDMTGEETGVLEVSGYSLIRLSAREG 362

Query: 349 EGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           +G++ L + +K  +  N   +  F   + +RHL  L+    +L+     L     G +++
Sbjct: 363 KGIDLLRDHLKEAMGFNSNTEGGFL--ARRRHLQALNTAAEHLQEGHQQLVFARSG-ELL 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 420 AEELRLAQQVLCEITGEFTSDDLLGRIFSSFCIGK 454


>gi|89067424|ref|ZP_01154937.1| tRNA modification GTPase [Oceanicola granulosus HTCC2516]
 gi|89046993|gb|EAR53047.1| tRNA modification GTPase [Oceanicola granulosus HTCC2516]
          Length = 422

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 158/444 (35%), Positives = 248/444 (55%), Gaps = 32/444 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFF-GLDGRILDK 63
           +TIFA+++    + ++++RLSGP      E +     P P    +LR    G D   LD+
Sbjct: 2   DTIFALASARGRAGVAVVRLSGPQARAAVERLAG---PLPEDGRTLRKLRDGADE--LDE 56

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L++VFP   SFTGE+  E H+HG +AV++ +L+ L +   LR+A  GEF+ RAF NG++
Sbjct: 57  ALVLVFPEGRSFTGEEVVELHLHGSLAVISAVLQRLGQDRRLRMAAAGEFTNRAFVNGRL 116

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL + E LADLI +ETE+QR+ ++  + G L      W  +L    + +EA +DF+ +ED
Sbjct: 117 DLAQVEGLADLIDAETEVQRKQAVRALDGALGRKAELWRAQLIRAVALVEATIDFA-DED 175

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V    S EV   +  ++ D++S      + E +R G+++ ILG  N GKS+L NALA ++
Sbjct: 176 VPEDVSAEVAELVEGVRTDLASEARGVGIAERVRAGFEVAILGAPNVGKSTLLNALAGRE 235

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AI +++ GTTRDV+ + ++L G  V + DTAG+RE  D VE+ G++R     E ADL +
Sbjct: 236 AAITSEVAGTTRDVIEVRMELAGLPVTVLDTAGLREATDQVERIGVERALARAEQADLRV 295

Query: 304 LLKEINSKKEISFPKNI--DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            L +         P N+  D I +  K+DL           +S  TG G+++L+ ++   
Sbjct: 296 HLVDGGQS-----PANVRADDIVVQAKADLRGEG-------VSGLTGAGVDKLVAELGQR 343

Query: 362 LSNKFKKLPFSIP-----SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           LS +      ++      + +R    L+  VR + +  L E     D++AE LR A  ++
Sbjct: 344 LSARVPDGAVAVRERHRLAMERAAEGLASVVRQITL--LEEMP---DLLAEELRGAIRAI 398

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
             + G VDVEQ+L  IFS FCIGK
Sbjct: 399 DSLVGRVDVEQVLGEIFSSFCIGK 422


>gi|119947214|ref|YP_944894.1| tRNA modification GTPase TrmE [Psychromonas ingrahamii 37]
 gi|166234813|sp|A1T0N0|MNME_PSYIN RecName: Full=tRNA modification GTPase mnmE
 gi|119865818|gb|ABM05295.1| tRNA modification GTPase trmE [Psychromonas ingrahamii 37]
          Length = 455

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 167/454 (36%), Positives = 250/454 (55%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + I  K  P  R A    F      +LD+G+
Sbjct: 6   DTIVAQATAPGRGGVGIIRISGPDVEAVAKVILGKV-PKLRFAEYLSFSDQHNEVLDQGI 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F +P SFTGED  E   HGG  V++ +++ +  + NLR ANPGEFS RAF N K+DL
Sbjct: 65  ALFFKAPNSFTGEDVLELQGHGGPVVMDMLIKAILSIKNLRGANPGEFSERAFMNDKLDL 124

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE +ADLI + +E   + ++  + GE S    Q ++ L ++R ++EA +DF EEE V 
Sbjct: 125 AQAEGIADLIEATSEQAAKSALHSLQGEFSEKIEQLVESLIYLRIYVEASIDFPEEE-VD 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  + +++ +   Q K G I+R+G K+VI G  NAGKSSL N+L   + A
Sbjct: 184 FLSDGKISKGLYQIIDNLEAVKKQAKQGAILRDGMKVVIAGRPNAGKSSLLNSLVGVERA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDV+   + ++G  + I DTAG+RE  D +EK GI+R + E+  AD IL +
Sbjct: 244 IVTDIAGTTRDVMREHIHIDGMPLHIIDTAGLREGADEIEKIGIERAWQEITTADRILFM 303

Query: 306 KEINSK-----KEI------SFPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348
            +  +      ++I        PK++    +  K+DL     + TE +DH    IS+ TG
Sbjct: 304 LDATTTSAEDPRQIWPDFIDKLPKSVGLTVVRNKADLTGEAFSMTENHDHPVYRISAKTG 363

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIA 406
           +G++ L   +K I+  +         + +RHL  +    R+L      L E   G +++A
Sbjct: 364 QGVDLLKEHLKDIMGYQGHTTS-GFMARRRHLEAIDNAQRHLLEGKVQLEEYKAG-ELLA 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 422 EELRLTQQYLSEITGAFSSDDLLGKIFSSFCIGK 455


>gi|325267233|ref|ZP_08133896.1| tRNA modification GTPase TrmE [Kingella denitrificans ATCC 33394]
 gi|324981294|gb|EGC16943.1| tRNA modification GTPase TrmE [Kingella denitrificans ATCC 33394]
          Length = 458

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 160/454 (35%), Positives = 253/454 (55%), Gaps = 24/454 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      + ++R+SG +     + I   K P PR A    F    G  +D GLL
Sbjct: 9   TIAAIATANGRGGVGVVRISGKNLLPFAQQITGGKTPEPRTALYTDFLDAQGNAIDNGLL 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F +P SFTGED  E   HGG  V+  +L+   ++   R+A  GEF++RAF N K+DL 
Sbjct: 69  LYFTAPASFTGEDVLELQGHGGQIVLQMLLQRCLEL-GARIAEAGEFTKRAFLNNKLDLA 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AES+ADLI + ++   R+++  + G  S+     +D L  +R  +EA LDF EE D+  
Sbjct: 128 QAESVADLIDASSQSAARMAVRSLKGAFSAQIHTLVDDLITLRMLVEATLDFPEE-DIDF 186

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + +    +  L+  ++  ++  + G I+R+G  +V++G  N GKSSL NALA  DVAI
Sbjct: 187 LEAADAKGKLRALQTQLADILANARQGAILRDGMSVVLVGAPNVGKSSLLNALAGDDVAI 246

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTDI GTTRD +   + L+G  + I+DTAG+R+TDD+VEK GI+R+   V+NAD+ L+L 
Sbjct: 247 VTDIAGTTRDTVREQITLDGVPIHITDTAGLRQTDDVVEKIGIERSEKAVQNADVALILV 306

Query: 307 E----IN-SKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDHL-------------ISSF 346
           +    IN + ++I    P ++  I +  K DL +      D               +S+ 
Sbjct: 307 DPSEGINKTTRDIMCRLPAHLKRIEVHNKIDLRNVQAARSDDAAAQSLSGADTVISLSAK 366

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
           TG GL+ L   +   +  + +     + +  RH++ L      LE A+L + +  ++++A
Sbjct: 367 TGAGLDLLKAALLQQIGWQGESEGLFL-ARTRHIHALQTAQAELENAALCDNNH-IELLA 424

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+LRLA  +  +ITG    + LL +IFS+FCIGK
Sbjct: 425 EHLRLAQAACNQITGEFTSDDLLGVIFSRFCIGK 458


>gi|284007058|emb|CBA72333.1| probable tRNA modification GTPase [Arsenophonus nasoniae]
          Length = 470

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 169/467 (36%), Positives = 258/467 (55%), Gaps = 41/467 (8%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
            +  +TI A +T      + I+R+SGP   ++   +  K  P PR A    F+  +G++L
Sbjct: 17  TYTNDTIIAQATPPGRGGVGILRISGPKVIEIARIVLGKL-PQPRYADYLPFYDSNGKVL 75

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+G+ + FP+P SFTGED  E   HGG  +++ +L+ +  +  +R+ANPGEFS RAF N 
Sbjct: 76  DQGIALYFPAPNSFTGEDVLELQGHGGPVIIDLLLKRILVIDEIRIANPGEFSERAFLND 135

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ADLI + TE   R ++  + G  S    + ++ LT++R ++EA +DF +E
Sbjct: 136 KMDLAQAEAIADLIDASTEQAARSAVNSLQGVFSQQIYEMVEALTNLRIYVEAAIDFPDE 195

Query: 182 EDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           E +   S  ++   LN+++   + + S   QG L   +R G K+VI G  NAGKSSL NA
Sbjct: 196 E-IDFLSDGKIETKLNEVIAHLDSVRSQAYQGSL---LREGMKVVIAGRPNAGKSSLLNA 251

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L+ ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VEK G++R + E+E 
Sbjct: 252 LSGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVEKIGVERAWQEIEQ 311

Query: 299 ADLILLL-----------KEINSKKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHL 342
           AD IL +           K+I  +     PK++    I  K D+       T    Y  +
Sbjct: 312 ADHILFMVDSTTTQATEPKQIWPEFMARLPKSLPITVIRNKVDITDEPIAITKVGNYSLI 371

Query: 343 -ISSFTGEGLEELINKIK-SILSNKFKKLPFSIPSHKRHLY-------HLSQTVRYLEMA 393
            +S++  EG++ L   +K SI  N   +  F   + +RH+        HL Q  + L +A
Sbjct: 372 RLSAYRKEGIDLLRQHLKESIGFNHHIEGGFL--ARRRHIQALNIAAEHLQQGYQQLVVA 429

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              E      ++AE LRL   +L +ITG    + LL  IFS FCIGK
Sbjct: 430 HSGE------LLAEELRLTQQALSEITGEFSSDDLLGSIFSSFCIGK 470


>gi|257095986|ref|YP_003169627.1| tRNA modification GTPase TrmE [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048510|gb|ACV37698.1| tRNA modification GTPase TrmE [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 458

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 156/436 (35%), Positives = 255/436 (58%), Gaps = 20/436 (4%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             I +IR++G S  +  E +  ++ P  R+A+L  F   D  ++D GLL+ FP+P SFTG
Sbjct: 30  GGIGVIRVAGASLLEFAEALSGRR-PLARRATLCEFRAADHVVIDTGLLLYFPAPHSFTG 88

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           +D  E H HGG  V+  +L    ++   RLA+PGEF+RRA+ NGK+DL +AE++ DLI +
Sbjct: 89  DDVLELHGHGGPVVMQMLLVRCLEL-GARLADPGEFTRRAYLNGKLDLAQAEAVIDLIDA 147

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            T    R ++  + GE S      +D+L  +R+ +EA LDF +E DV    + +    + 
Sbjct: 148 ATAAAARSAVRSLQGEFSGEVRVLLDQLIELRALVEATLDFPDE-DVDFLEAADAFGRLD 206

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L+  ++    + + G +++ G  +V++G  N GKSSL N LA  +VAIVT +PGTTRD+
Sbjct: 207 RLEQRLTRVFERARQGRLLQGGLHVVLVGKPNVGKSSLLNRLAGDEVAIVTPLPGTTRDL 266

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKK 312
           +   L +EG  + + DTAG+R+T+D +E+ GI+RT+ E+E AD+++LL +      ++++
Sbjct: 267 VRSTLQVEGIPLHVIDTAGLRDTEDQIERLGIERTWREIERADVVVLLVDARTGVGDAER 326

Query: 313 EI--SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKIKSILSN 364
            I   FP  +  +F+  K DL S   E  +       ++S+ +GEG E L  ++  I   
Sbjct: 327 VILAKFPAKLARVFVYNKIDLTSRAAERREEADGVAIMLSARSGEGSELLRQELLRIAGW 386

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
              +  F   + +RHL+ L++T + ++ A    +   L++ AE LRLA ++L +ITG   
Sbjct: 387 HPAEDVFI--ARERHLHALAETRQNIDAA--RRQLPSLELFAEELRLAQLALSRITGEYS 442

Query: 425 VEQLLDIIFSKFCIGK 440
            + LL  IF +FCIGK
Sbjct: 443 ADDLLGEIFGRFCIGK 458


>gi|254467101|ref|ZP_05080512.1| tRNA modification GTPase TrmE [Rhodobacterales bacterium Y4I]
 gi|206688009|gb|EDZ48491.1| tRNA modification GTPase TrmE [Rhodobacterales bacterium Y4I]
          Length = 428

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 243/437 (55%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    + +++IR+SGP        +C    P  R  SLR      G  LD+ L
Sbjct: 2   DTIFALASAQGKAGVAVIRVSGPLALTAGAQLCGGHLP-ARGTSLRILQDESGERLDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +P SFTGE++ EF  HG  AV++ +L+ L ++  LR+A PGEF+RRA ENG +DL
Sbjct: 61  VLSFTAPHSFTGENTVEFQTHGSTAVISAVLDSLRRIDGLRIAEPGEFTRRALENGHLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ +   ++G L  L   W  KL    S IE  +DF+ +EDV 
Sbjct: 121 AQVEGLADLIDAETEAQRKQAQVILAGGLGRLAEDWRGKLIRAASLIEVTIDFA-DEDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV   +  ++  +       ++ E IR+G+++ I+G  N GKS+L NALA ++ A
Sbjct: 180 VDVTPEVSALLADVQAGLEKETVGVRIAERIRSGFEVAIVGAPNVGKSTLLNALAGREAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRD++ + +DL G  V + DTAG+R+TDD VE  GI       ++ADL + L
Sbjct: 240 ITSEYAGTTRDIIEVRMDLAGLPVTLLDTAGLRDTDDHVEGIGIALARKRAQDADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E +   ++   +    I +  K+DL     ++    IS  +G+G++ L++ I  +L N+
Sbjct: 300 AERDEVLDVEMQQG--DIRLLPKADLR----DDAGDAISGQSGQGIDRLVDHISKVLQNR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCV 423
             +    I +  RH   +   +  L  A   L       DI AE +R A  +L  + G +
Sbjct: 354 SAQ--AGIATRARHRDAMVSALASLAGAQEILKRGPEFYDIAAEEMRSAIRALEMLVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
            VE LLD IFS FC+GK
Sbjct: 412 GVENLLDEIFSSFCLGK 428


>gi|156936085|ref|YP_001440001.1| tRNA modification GTPase TrmE [Cronobacter sakazakii ATCC BAA-894]
 gi|166200478|sp|A7MN03|MNME_ENTS8 RecName: Full=tRNA modification GTPase mnmE
 gi|156534339|gb|ABU79165.1| hypothetical protein ESA_03979 [Cronobacter sakazakii ATCC BAA-894]
          Length = 454

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 169/463 (36%), Positives = 257/463 (55%), Gaps = 32/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P  R A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRVSGQQARNVAQAVLGKL-PKARYADYLPFKDADGTA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD 178

Query: 181 EEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           EE +   S  ++   LN+++    D+ +  ++ + G ++R G K+VI G  NAGKSSL N
Sbjct: 179 EE-IDFLSDGKIEAQLNEVI---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLN 234

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           ALA ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E
Sbjct: 235 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 294

Query: 298 NADLILLLKEINSKKEISFPKNI--DFI----------FIGTKSDLYSTY---TEEYDH- 341
            AD +L + +  +  + + P  I  DFI           +  K+D+       +E   H 
Sbjct: 295 QADRVLFMVD-GTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHS 353

Query: 342 --LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNE 397
              +S+ T EG++ L N +K  +      +     + +RHL  L     +L+   A L  
Sbjct: 354 LIRLSARTNEGVDVLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLG 412

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              G +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 413 AWAG-ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|219114453|ref|XP_002176397.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402643|gb|EEC42633.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 609

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 173/498 (34%), Positives = 261/498 (52%), Gaps = 64/498 (12%)

Query: 5   KETIFAVSTGAL---PSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR- 59
           ++TIFA+S+GA     +A+++IRLSGP    + + +   +  P PR A+LR    LD   
Sbjct: 114 QDTIFALSSGAATGQATAVAVIRLSGPQAGVILQRLTPGRPLPKPRTAALRKLHDLDDPK 173

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            +LD+ L++ F  P SFTG+D  E  VHG  AVV  +LE L      RLA PGEF++RA+
Sbjct: 174 VVLDQALVLYFSGPNSFTGDDVVELQVHGSRAVVTAVLETLGTAA--RLAEPGEFTQRAW 231

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
             GK+D L+ E+LADL++++T  QR+ ++  + G+LS++Y  W D L    +  EA +DF
Sbjct: 232 LAGKLDALQVEALADLLTADTATQRQQALAQLDGQLSAVYDTWRDMLVAGLAHAEAVIDF 291

Query: 179 SEEEDV---------QNFSSKEVLNDIL----FLKNDISSHISQGKLGEIIRNGYKIVIL 225
            ++E +         Q  +   V   ++     L+  +   +   + GE++R G +I I+
Sbjct: 292 GDDERLDDALLDEEDQQLAQDNVWGGVVGNMEVLERSMRRQLQDARRGELVRQGLQIAIV 351

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIV 284
           G  NAGKSSLFN LA +D AIV+   GTTRDVL + L+L G    + DTAG+R  TDD +
Sbjct: 352 GPPNAGKSSLFNILADRDAAIVSPTAGTTRDVLELSLNLGGVKCVLQDTAGVRTFTDDAI 411

Query: 285 EKEGIKRTFLEVENADLILLL---KEINSKKEI-----SFPKNID---FIFIGTKSDLYS 333
           E EGI R       ADL+L +    ++ S  EI         N+D    + +  KSDL  
Sbjct: 412 EMEGIARATRAAAQADLVLAMVDSSDVESGLEILTTILQNSPNLDRQHVLLLLNKSDLRE 471

Query: 334 TYTEEYD-------------HLISSFTGEGLEELINKIKSILSNKFKKLPFS-------- 372
              +  +             + IS  T  G++  +  +  I   +      S        
Sbjct: 472 EKHQTIEVPGKDVVELIGGQYEISCATQNGVDTFLESLTRICVARVSNTDASDRDKTSIV 531

Query: 373 --------IPSHKRHLYHLSQTVRYLE-MASLNEKDC-GLDIIAENLRLASVSLGKITGC 422
                   + +  RH  H+   V  LE   +L+++    +D+ AE LRLA+  LG+ITG 
Sbjct: 532 DRETSEGTLITRARHRQHVQAAVEALERFQTLSQQGTMSVDLAAEELRLAASELGRITGA 591

Query: 423 VDVEQLLDIIFSKFCIGK 440
           VDVE +LD +F+ FCIGK
Sbjct: 592 VDVEDVLDKLFADFCIGK 609


>gi|149911784|ref|ZP_01900388.1| tRNA modification GTPase [Moritella sp. PE36]
 gi|149805130|gb|EDM65152.1| tRNA modification GTPase [Moritella sp. PE36]
          Length = 454

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 167/454 (36%), Positives = 249/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A +T      + IIR+SG     V + I  K  P  RKA    F   D + +D+G+
Sbjct: 5   ETIIAQATPPGRGGVGIIRISGAKTELVAQTILNKI-PAVRKADYLSFLDEDQQTIDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I+F +P SFTGED  E   HGG  +++ ++  + K+  +R+A PGEFS RAF N K+DL
Sbjct: 64  AILFKAPNSFTGEDVLELQGHGGPVIMDMLMRRILKIDGIRMARPGEFSERAFLNDKMDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +M  + GE S       + L H+R ++EA +DF EEE V 
Sbjct: 124 TQAEAIADLIDATSERAAKSAMNSLQGEFSKKINTLTESLIHLRIYVEAAIDFPEEE-VD 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  ++   +  + +++S+   + K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 183 FLADGKIAQALYNIMDNLSAVQKEAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGKESA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI+R + E+ NAD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDRVEQIGIERAWQEINNADQVLFM 302

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSDLYS---TYTEEYDHLISSFTGE-- 349
                 +     EI        P +I    I  K DL     T +++  H +   + +  
Sbjct: 303 VDGTTTDATDPAEIWPDFIDRLPSSIGLTVIRNKVDLTGETLTVSDDQSHPVFKISAKEN 362

Query: 350 -GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
            GL+EL + +K  +  K         + +RHL  L +   +L++    L     G +++A
Sbjct: 363 LGLDELKDHLKQCMGYK-SNTEGGFIARRRHLDALEKADEHLQIGKQQLEVYKAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA   L +ITG    + LL  IF+ FCIGK
Sbjct: 421 EELRLAQQQLSEITGEFSSDDLLGRIFTSFCIGK 454


>gi|167855706|ref|ZP_02478462.1| tRNA modification GTPase TrmE [Haemophilus parasuis 29755]
 gi|167853162|gb|EDS24420.1| tRNA modification GTPase TrmE [Haemophilus parasuis 29755]
          Length = 452

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 172/462 (37%), Positives = 255/462 (55%), Gaps = 37/462 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + +  K  P PR A    F   DG +LD+G
Sbjct: 2   KETIVAQATPIGRGGIGILRVSGPLATEVAQAVLGKC-PKPRIADYLPFKDEDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L  + K+  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPHSFTGEDVLELQGHGGQVILDLLLNRILKVKGVRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE-I 179

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LN+I+    ++     QG    I+R G K+VI G  NAGKSSL NALA 
Sbjct: 180 DFLADGKIEAKLNEIIAQLANVRQEAKQGT---ILREGMKVVIAGKPNAGKSSLLNALAG 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VEK GIKR + E+E AD 
Sbjct: 237 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIKRAWDEIEQADH 296

Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEEYDHLI------- 343
           +LL+ + N  +  SF           PKNI    I  K DL    T E + L+       
Sbjct: 297 VLLMIDSNESQADSFQQEWATFLAKLPKNIPVTVIRNKVDL----TGEAESLVQADNFTV 352

Query: 344 ---SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398
              S+ T  G++ L   +K  +  +         + +RHL  L     +LE     L + 
Sbjct: 353 IRLSAQTKVGVDLLREHLKKSMGYQ-SSTEGGFIARRRHLVALETAAEHLERGHIQLTQF 411

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             G +++AE LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 412 YAG-ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|239818256|ref|YP_002947166.1| tRNA modification GTPase TrmE [Variovorax paradoxus S110]
 gi|239804833|gb|ACS21900.1| tRNA modification GTPase TrmE [Variovorax paradoxus S110]
          Length = 471

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 163/470 (34%), Positives = 251/470 (53%), Gaps = 40/470 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKG 64
           + I A++T +   A+ I+R+SG     + + +C +  P  PR+A+   F    G  +D G
Sbjct: 7   DPIVAIATASGRGAVGIVRVSGARLAPLVDALCGR--PLKPREATYLPFRDAAGEPVDHG 64

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-------------AKMPNLRLANPG 111
           L I FPSP SFTGED  E   HGG  V+  +L                 ++P LR+A PG
Sbjct: 65  LAIHFPSPHSFTGEDVLELQAHGGTVVLQLLLARCLEAAAEADPVTGRPRLPGLRVAEPG 124

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EFS+RAF NGKIDL +AE++ADLI + TE   R +   +SG  S       D L H+R  
Sbjct: 125 EFSQRAFLNGKIDLAQAEAIADLIDASTEAAARSAGRSLSGAFSREIHALRDALIHLRML 184

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           +EA LDF EEE +      +    +  L+  +++   + K G ++R G K+VI G  NAG
Sbjct: 185 VEATLDFPEEE-IDFLQKADATGQLAKLQAQLAAVQQRAKQGALLREGIKVVIAGQPNAG 243

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NALA  ++AIV+ + GTTRDV++  + + G  + + DTAG+RE+ D VE+ G+ R
Sbjct: 244 KSSLLNALAGAELAIVSAVAGTTRDVVSETIQIHGVPLHVVDTAGLRESSDEVEQIGVAR 303

Query: 292 TFLEVENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSD---LYS 333
            + ++E AD +L L ++    +  +               P ++  + +  K D   +  
Sbjct: 304 AWGQIEGADAVLFLHDLTRTGQPEYAAADAEILRVLQHKLPASVPVLDVWNKQDAAPMPE 363

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQ--TVRYL 390
           T        +S+ TG G+E L  ++ ++    ++ +P  +  +  RH+  L Q  T   L
Sbjct: 364 TAGAAQGIALSAKTGLGIEALREQLLAMAG--WQAVPEGVYLARARHVQALGQVETHLAL 421

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + L  +   LD++AE LRLA  +L +ITG    + LL +IFS+FCIGK
Sbjct: 422 AASHLAAQAQLLDLLAEELRLAQNALNEITGEFGADDLLGVIFSRFCIGK 471


>gi|326319555|ref|YP_004237227.1| tRNA modification GTPase TrmE [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323376391|gb|ADX48660.1| tRNA modification GTPase TrmE [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 476

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 166/479 (34%), Positives = 247/479 (51%), Gaps = 43/479 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     + E +C +    PR+A+   F    G+ 
Sbjct: 2   LPRHTDPIAAIATAPGRGAVGIVRVSGRGVGPLVEALCGRTL-RPREATYLPFRDAAGQS 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-------------AKMPNLRL 107
           +D+GL + FP+P S+TGED  E   HGG  V+  +L                 ++P LRL
Sbjct: 61  IDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLQAASEPDRATGRPRLPGLRL 120

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEF+ RAF N KIDL +AE++ADLI + TE   R +   ++G  S    +  D L H
Sbjct: 121 ARPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLAGAFSDEIHRLRDALVH 180

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA LDF EEE +      +    +  L+  ++  + + + G ++R G K+VI G 
Sbjct: 181 LRMLVEATLDFPEEE-IDFLRKADAHGQLAALQRTLAEVMGRTRQGALLREGIKVVIAGQ 239

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+RE+DD VE+ 
Sbjct: 240 PNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESDDEVERI 299

Query: 288 GIKRTFLEVENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSDLY 332
           GI+R + E+  AD +L L ++    +  +               P  +  + +  KSD  
Sbjct: 300 GIERAWQEIAAADAVLFLHDLTRAGQPDYEAADAEIAARLAGMAPAQVPVVDVWNKSDRA 359

Query: 333 STYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHL 383
              +              +S+ TGEGL+ L   +  I    ++  P  I  +  RHL  L
Sbjct: 360 EGSSGAAPDAPGRAAAVRLSARTGEGLDGLRRVLLDIAG--WQSAPEGIYTARARHLEAL 417

Query: 384 SQTVRYL-EMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                +L E A+  E D   LD++AE LRLA  +L  ITG    + LL +IFS FCIGK
Sbjct: 418 QAVDAHLMEAAAQLESDGPALDLLAEELRLAQQALNAITGEFTSDDLLGVIFSSFCIGK 476


>gi|226947216|ref|YP_002802289.1| tRNA modification GTPase TrmE [Azotobacter vinelandii DJ]
 gi|226722143|gb|ACO81314.1| tRNA modification GTPase TrmE [Azotobacter vinelandii DJ]
          Length = 455

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 165/460 (35%), Positives = 256/460 (55%), Gaps = 25/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGR 59
           M+  +ETI A++T      + I+R+SGP    +   IC +  P  PR A    F    G+
Sbjct: 1   MHSARETIAAIATAQGRGGVGIVRVSGPLAGTIATGICAR--PLRPRHAHYGAFRDGTGQ 58

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+G+ + FP P SFTGED  E   HGG  V++ +L    ++   R+A PGEFS +AF 
Sbjct: 59  VLDEGIALFFPGPHSFTGEDVLELQGHGGPLVLDLLLRRCLEL-GARMARPGEFSEQAFL 117

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N K+DL +AE++ADLI + +    R ++  + GE S       ++L  +R ++EA +DF 
Sbjct: 118 NDKLDLAQAEAIADLIEASSAQAARNALRSLQGEFSRRVNALGERLIELRLYVEAAIDFP 177

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EEE +   +   VL  +  L+ D+S+ + +   G ++R+G  +VI G  NAGKSSL NAL
Sbjct: 178 EEE-IDFLADGRVLELLDGLRADLSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNAL 236

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A ++ AIVTDI GTTRD+L   + ++G  + I DTAG+R+T+D VE+ G++R    +  A
Sbjct: 237 AGRESAIVTDIAGTTRDLLREHIHIDGMPLHIVDTAGLRDTEDRVERIGVERALQAIREA 296

Query: 300 DLILLLKEINSKKEIS----FPKNIDF-------IFIGTKSDLYS---TYTEEYD-HLI- 343
           D +LL+ + ++ +       +P+ +D          I  K DL      + +  D H++ 
Sbjct: 297 DRVLLVIDASAPEAADPFALWPEFLDLPPEPGKVTLIRNKIDLTGEPIVHEQGSDGHVVI 356

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
             S+ TGEGL+ L   +K+ +  + + +  S  +  RHL  L +    LE        CG
Sbjct: 357 GLSARTGEGLDLLRKHLKACMGFE-QTIESSFSARCRHLEALRRAANSLEHGHAQLIGCG 415

Query: 402 L-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE+LR A   LG+ITG    + LL  IFS FCIGK
Sbjct: 416 AGELLAEDLRQAQQHLGEITGAFTSDDLLGRIFSSFCIGK 455


>gi|311696589|gb|ADP99462.1| tRNA modification GTPase TrmE [marine bacterium HP15]
          Length = 468

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 166/460 (36%), Positives = 252/460 (54%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TI A++T    + + I+R+SGP    + + +   + P PR A    F    G +
Sbjct: 13  MSQSSDTIAAIATAPGQAGVGIVRISGPKSLAIAKKMLGFE-PKPRYAHYGPFHDSHGEL 71

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + FP+P SFTGED  E   HGG  +++ +L E+      RLA PGEFS RAF N
Sbjct: 72  IDEGIGLFFPNPHSFTGEDVFELQGHGGTVILDLLLREVCGQ-GARLARPGEFSERAFLN 130

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI S +E   R ++  M G  S      +D +TH+R ++EA +DF E
Sbjct: 131 DKLDLAQAEAIADLIESSSEQAARCAVRSMQGVFSRQIEDLVDAVTHLRIYVEAAIDFPE 190

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +  +V +D+  L   +   +++ + G I+R+G K+VI G  NAGKSSL NALA
Sbjct: 191 EE-IDFLADGKVASDLQNLLERLGKILAEAQQGTILRDGMKVVIGGRPNAGKSSLLNALA 249

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT I GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI R + E+  AD
Sbjct: 250 GREAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDEVEQIGIARAWEEIRQAD 309

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLY--STYTEEYDHL----- 342
            ILL+ +  + ++ S            P N     I  K DL   +      DH      
Sbjct: 310 RILLMVDATTTEKTSPHEIWPDFIDQLPANAPVTVIRNKVDLSGETVGISAEDHQSAPVI 369

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            +++ + EGLE L + +K  +            + +RHL  L +    L       +  G
Sbjct: 370 RLAAKSAEGLEILRDHLKQCMGFA-STTEGGFLARRRHLDALERAQALLIQGQSQLEGFG 428

Query: 402 L-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE+LR A  SLG+ITG +  ++LL  IFS FCIGK
Sbjct: 429 AGELLAEDLRAAQDSLGEITGHLTPDELLGKIFSSFCIGK 468


>gi|50123364|ref|YP_052531.1| tRNA modification GTPase TrmE [Pectobacterium atrosepticum
           SCRI1043]
 gi|81643492|sp|Q6CYQ9|MNME_ERWCT RecName: Full=tRNA modification GTPase mnmE
 gi|49613890|emb|CAG77342.1| probable tRNA modification GTPase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 454

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 162/454 (35%), Positives = 249/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +  +V   +  K  P PR A    F   +G  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGQAAAEVAHAVLGKL-PKPRHADYLPFRDTNGTTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +PN+R+A PGEFS RAF N K+DL
Sbjct: 64  ALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLPNVRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+ +  ++   G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEAQLNGVMADLDAVRTEAHQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTAIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFM 302

Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTG 348
                      ++I  +     PK +    +  K+D+        D   H    +S+ TG
Sbjct: 303 VDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGIADVNTHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L + +K  +            + +RHL  L    ++L      L     G +++A
Sbjct: 363 EGVDTLRDHLKQSMGFT-SNTEGGFLARRRHLQALELAAQHLIQGKEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|261823804|ref|YP_003261910.1| tRNA modification GTPase TrmE [Pectobacterium wasabiae WPP163]
 gi|261607817|gb|ACX90303.1| tRNA modification GTPase TrmE [Pectobacterium wasabiae WPP163]
          Length = 454

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 163/454 (35%), Positives = 249/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +  +V   I  K  P PR A    F   +G  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAAAEVAHAILGKL-PKPRHADYLPFRDTNGTTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +PN+R+A PGEFS RAF N K+DL
Sbjct: 64  ALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLPNVRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+ +  ++   G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEAQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTAIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFM 302

Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTG 348
                      ++I  +     PK +    +  K+D+        D   H    +S+ TG
Sbjct: 303 VDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGIEDVNTHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L + +K  +            + +RHL  L    ++L      L     G +++A
Sbjct: 363 EGVDTLRDHLKQSMGFT-SNTEGGFLARRRHLQALELAAQHLVQGKEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|220936472|ref|YP_002515371.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997782|gb|ACL74384.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. HL-EbGR7]
          Length = 446

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 162/446 (36%), Positives = 243/446 (54%), Gaps = 15/446 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A++T      + ++R+SGP+   +   I  +  P PR A+   F G  G  LD G
Sbjct: 6   EDTIAAIATPPGFGGVGVVRISGPNTAALARAILGRL-PAPRHATYAPFLGEQGETLDDG 64

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP P S+TGED+ E   HGG  V++ +L     +   R A PGEF+ RAF NG++D
Sbjct: 65  IALFFPGPRSYTGEDTLELQGHGGPVVLDLLLSRCLAL-GCRAARPGEFTERAFLNGRLD 123

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +    R +   + G LS      +D LT +R  +EA LDF +E DV
Sbjct: 124 LAQAEAVADLIEAGSAQAARSARRALEGALSHEVNALLDALTGLRVSVEAALDFPDE-DV 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                 +V   +  L   I   I     G ++R G ++VI G  NAGKSSL N L +++ 
Sbjct: 183 DILREAQVQARLADLSGRIDRLIRGAAQGALLREGLRLVIAGRPNAGKSSLLNRLVRREA 242

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT IPGTTRDVL   + L+G  + + DTAG+RE+DD VE+EGI+R + E+E AD +LL
Sbjct: 243 AIVTHIPGTTRDVLRETVSLDGLPLHLVDTAGLRESDDPVEQEGIRRAWAEIEAADAVLL 302

Query: 305 L-------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELI 355
           +        E  +      P ++  I +  K DL      +   +  +S+  G+G++ L 
Sbjct: 303 VVDDALGEGEEEAAIRARLPGHLPVICVHNKIDLTGRVPGKQGGVLYLSAQDGQGVDSLR 362

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASV 414
             +K+     F        + +RHL  L++T  ++  A        G +++AE+LRLA  
Sbjct: 363 EHLKA--QAGFSGGEGLFLARRRHLDALTRTAGHVATARDALAVGAGPELVAEDLRLAQE 420

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LG+ITG    + LL  IFS FCIGK
Sbjct: 421 TLGEITGRFSSDDLLGRIFSTFCIGK 446


>gi|114322028|ref|YP_743711.1| tRNA modification GTPase TrmE [Alkalilimnicola ehrlichii MLHE-1]
 gi|122310594|sp|Q0A4L6|MNME_ALHEH RecName: Full=tRNA modification GTPase mnmE
 gi|114228422|gb|ABI58221.1| tRNA modification GTPase trmE [Alkalilimnicola ehrlichii MLHE-1]
          Length = 444

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 162/448 (36%), Positives = 254/448 (56%), Gaps = 18/448 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           + TI A++T      +++IR+SGP+   +   +  +  P PR+A L  F    G  LD+G
Sbjct: 3   RTTICALATPPGRGGVAVIRVSGPAVPAIARALAGRL-PEPRRAVLARFCDAGGDTLDEG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP+P SFTGED  E   HGG  VV+ +L  L  +     A PGEFS RAF NG++D
Sbjct: 62  LMLYFPAPRSFTGEDVLELQGHGGEVVVDRLLRRLHAL-GAHPARPGEFSERAFLNGRMD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI++++E   + ++  + G       + + ++T +R  +EA +DFS+EE +
Sbjct: 121 LTQAEAIADLIAADSEASAQAALRSLEGAFGDAVRELVARVTRLRVQVEAAIDFSDEE-I 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              + + V   I  L + + +   +   G ++R+G ++V+ G  NAGKSSL NAL + D 
Sbjct: 180 DFLADEAVAGQIGALIDQLQALRDKAGQGRVLRDGMQVVLAGPPNAGKSSLLNALTEDDS 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT++PGTTRD+L   L ++G  + + DTAG+R+  D +E EGI+R    +  AD +LL
Sbjct: 240 AIVTEVPGTTRDLLREHLHIDGMPLHVIDTAGLRDDPDRIEAEGIRRARAAMAEADRVLL 299

Query: 305 LKEINSKK----EISFPKNIDFIFIGTKSDLYSTYT------EEYDHLISSFTGEGLEEL 354
           +++I         ++ P +I    +  K DL           +E    +S+ TG GL  L
Sbjct: 300 IQDIREPPIDPAALALPGDIPLTRVYNKVDLSDEAPGPRRAGDEVAIAVSALTGVGLPAL 359

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLA 412
            + +KS++        FS  + +RHL  L++   +L +A  +L E+  G +I AE LRL 
Sbjct: 360 RDHLKSVMGYGEAGSHFS--ARRRHLDALARAADHLALARRALVEEMAG-EIAAEELRLV 416

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +LG+ITG    E LL  IFS FCIGK
Sbjct: 417 QHNLGEITGEFTSEDLLGEIFSSFCIGK 444


>gi|120600873|ref|YP_965447.1| tRNA modification GTPase TrmE [Shewanella sp. W3-18-1]
 gi|166991118|sp|A1RQE8|MNME_SHESW RecName: Full=tRNA modification GTPase mnmE
 gi|120560966|gb|ABM26893.1| tRNA modification GTPase trmE [Shewanella sp. W3-18-1]
 gi|319428592|gb|ADV56666.1| tRNA modification GTPase TrmE [Shewanella putrefaciens 200]
          Length = 453

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 163/453 (35%), Positives = 255/453 (56%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P  R A    F    G+++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDKATDVAMAVLGHL-PKTRYADYCDFKNATGQVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S    + +D++T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  + + +S+  +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIANALYKIIDKLSTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348
            +  +   +             P N+    I  K+DL       TEE     + IS+ TG
Sbjct: 302 VDGTTTDAVDPHDIWPDFINRLPANLGVTVIRNKADLTGENLDMTEEKGYSVYRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G++EL   +KS++  +   L     + +RHL  L     +L++     E     +++AE
Sbjct: 362 LGVDELKLHLKSLMGYQ-SNLEGGFIARRRHLEALDVAASHLQLGKEQLEVYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRMAQIALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|149375642|ref|ZP_01893411.1| tRNA modification GTPase TrmE [Marinobacter algicola DG893]
 gi|149360044|gb|EDM48499.1| tRNA modification GTPase TrmE [Marinobacter algicola DG893]
          Length = 456

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 165/460 (35%), Positives = 251/460 (54%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M +  +TI A++T    S + I+R+SGP    +   +   + P PR A    F    G +
Sbjct: 1   MFNATDTIAAIATAPGQSGVGIVRVSGPHATAIARQMLGFE-PRPRYAHYGPFLDTQGEL 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + FP+P SFTGED  E   HGG  +++ +L  + ++   RLA PGEFS RAF N
Sbjct: 60  IDEGIGLYFPNPHSFTGEDVFELQGHGGTVILDLLLRTVCEL-GARLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI S +E   R ++  + G  S      ++ +TH+R ++EA +DF E
Sbjct: 119 DKLDLTQAEAIADLIESSSEQAARCAVRSLQGVFSRRIDALVEAVTHLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +  +V ND+  +  D+   +++ + G I+R+G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGKVANDLQVIIQDLDIILAEAQQGTILRDGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT + GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI R + E+  AD
Sbjct: 238 GREAAIVTAVEGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDEVEQIGIARAWDEIRQAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYT--EEYDH------ 341
            ILL+ +  +  E              P       I  K DL       EE D       
Sbjct: 298 RILLMVDATTTPETEPHQLWPDFIDQLPSGAPLTVIRNKVDLTGEPAGFEELDASAAPVV 357

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDC 400
            I++ + +GLE L + +K  +          I + +RHL  L +  V  L+     +   
Sbjct: 358 RIAAKSADGLEVLRDHLKQCMGFASTTEGGFI-ARRRHLDALERARVSLLQGEDQLQGYG 416

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE+LR A  SLG+ITG +  + LL  IFS FCIGK
Sbjct: 417 AGELLAEDLRAAQDSLGEITGAMTPDDLLGKIFSSFCIGK 456


>gi|195151833|ref|XP_002016843.1| GL21987 [Drosophila persimilis]
 gi|194111900|gb|EDW33943.1| GL21987 [Drosophila persimilis]
          Length = 493

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 255/478 (53%), Gaps = 52/478 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFF-GLDGRILDK 63
           TI+++S+G +   +S+IR+SGP   +    I  C   +P  R+A L+ FF  +   ++D+
Sbjct: 24  TIYSLSSGHVKCGVSVIRVSGPQTKRALRAIVGCNDYEPKARQAYLKSFFHPISKEMIDR 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGED+ EF VHG +AV+  +L+ L ++  LR A PGEF++RAF  GK+
Sbjct: 84  GLLLWFPGPASFTGEDACEFQVHGSLAVIAAMLDALGRLDGLRPAEPGEFTKRAFFGGKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++    G L  LY +W  +L    + +EA +DF+EEE 
Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSMGALGRLYNKWRKRLIRCAAHLEAYIDFAEEEQ 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  ++ +I +H++  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 204 IEGGVILQLTKELKAVRGEIRNHLNDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVT+  GTTRD++    +  GY V  SDTAG+R  T D +E+EG+ R    +  +DLI
Sbjct: 264 VSIVTEQAGTTRDIIETMHNFGGYPVIFSDTAGLRRNTADSIEREGMARAKKCLAESDLI 323

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           LLL +  + +E+   + +        +    +Y  E D      +G+ ++ + NK  ++ 
Sbjct: 324 LLLTDAMAVRELDSNETV--------AGYVESYLNELDIASDLCSGKRVQLVANKTDTLS 375

Query: 363 SNKFKKLP-----FSIPSHK------------RHLYHLSQTVRYLEMASLNEK------D 399
             +  +L       SI  HK            + L  L  T R       N +       
Sbjct: 376 LEECHRLDKLSSILSISCHKPANMATFLNALEQQLQELCGTPRAEHPRITNTRYRQQLER 435

Query: 400 C-----------------GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           C                  + I A  LR +   + +ITG V  E +LD++F  FCIGK
Sbjct: 436 CIENIDIFLRDYKPDVFPDMAIAAAKLRNSVRCIERITGHVSCEDILDVVFKDFCIGK 493


>gi|320581325|gb|EFW95546.1| hypothetical protein HPODL_2880 [Pichia angusta DL-1]
          Length = 479

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 159/462 (34%), Positives = 262/462 (56%), Gaps = 29/462 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKGL 65
           T++A+ST    SAI+++R++GPS   +   +  +++P PR A+L   +    + ILD+ +
Sbjct: 19  TVYALSTYPARSAIAVVRITGPSSVSIYRALTARQQPKPRIATLAKLYHPKTKVILDEAI 78

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILE--ELAKMPN--LRLANPGEFSRRAFENG 121
           ++ F  P S+TGED  E H+HGG AV+  I+E  EL   P   +R A PG+FS++AF+NG
Sbjct: 79  VLYFKGPNSYTGEDMLELHLHGGTAVIKCIMESLELLHTPANPIRPAEPGDFSKKAFQNG 138

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE +  LI +ETE QR LS+  M GE   L+  W +++ +  + I   +DF EE
Sbjct: 139 KMDLTQAEGINSLIHAETERQRLLSLTSMKGETKELFHHWREQILNTYALITTLIDFGEE 198

Query: 182 EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            D++      +   +DI  L+ ++  ++ + +  + + +G+KI + G  NAGKSSL N +
Sbjct: 199 HDIEEIGQLFERAESDIKTLETEVRGYLERVQRSQTLMDGFKITLSGPPNAGKSSLLNII 258

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A +D AIV++I GTTRD + + LD+ GY V I DTAGIR  ++ +E+EGI+R  ++   A
Sbjct: 259 ANEDRAIVSEIEGTTRDSIEVPLDINGYKVVIGDTAGIRNAENQIEQEGIRRAKMKTSEA 318

Query: 300 DLILLL-----KEINS--KKEISFPKNIDFIFIGTKSDLYS---------TYTEEYD--- 340
           DL L+L     +E+    K  I        + I  KSDL +            +E++   
Sbjct: 319 DLNLVLLPCTPRELRKEMKDHIRSCDKEKLLIILNKSDLVTPDQVGNLVAQLEQEFEPKE 378

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             +IS    +G+ +L+N I   L +  +  P  + S  +++        + E   ++ K 
Sbjct: 379 IKVISCRNKDGIHDLLNTITQKLDHWTQDEPIFVSSRVQNIIQHDLLFGFEEFY-MHSKS 437

Query: 400 CGLDIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440
             + + AE L+++   +GKITG  + VE++L  IF+ FCIGK
Sbjct: 438 NDVVLAAEALKISMEGIGKITGEAIGVEEILGSIFANFCIGK 479


>gi|219871858|ref|YP_002476233.1| tRNA modification GTPase TrmE [Haemophilus parasuis SH0165]
 gi|219692062|gb|ACL33285.1| tRNA modification GTPase TrmE [Haemophilus parasuis SH0165]
          Length = 452

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 172/462 (37%), Positives = 255/462 (55%), Gaps = 37/462 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + +  K  P PR A    F   DG +LD+G
Sbjct: 2   KETITAQATPIGRGGIGILRVSGPLATEVAQAVLGKC-PKPRIADYLPFKDEDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L  + K+  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDLLLNRILKVKGVRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE-I 179

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LN+I+    ++     QG    I+R G K+VI G  NAGKSSL NALA 
Sbjct: 180 DFLADGKIEAKLNEIIAQLANVRQEAKQGT---ILREGMKVVIAGKPNAGKSSLLNALAG 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VEK GIKR + E+E AD 
Sbjct: 237 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIKRAWDEIEQADH 296

Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEEYDHLI------- 343
           +LL+ + N  +  SF           PKNI    I  K DL    T E + L+       
Sbjct: 297 VLLMIDSNESQADSFQQEWATFLAKLPKNIPVTVIRNKVDL----TGEAESLVQADNFTV 352

Query: 344 ---SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398
              S+ T  G++ L   +K  +  +         + +RHL  L     +LE     L + 
Sbjct: 353 IRLSAQTKVGVDLLREHLKKSMGYQ-SSTEGGFIARRRHLVALETAAEHLERGHIQLTQF 411

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             G +++AE LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 412 YAG-ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|149204377|ref|ZP_01881344.1| tRNA modification GTPase [Roseovarius sp. TM1035]
 gi|149142262|gb|EDM30309.1| tRNA modification GTPase [Roseovarius sp. TM1035]
          Length = 428

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 166/437 (37%), Positives = 250/437 (57%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +T++A++T    + ++++R+SGP  F  C  IC    P PR + LR      G  LD+ L
Sbjct: 2   DTVYALATAQGKAGVAVVRVSGPRAFDACLHICGDV-PEPRNSVLRVLRDGQGAQLDQAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F   +SFTGE++ EFH+HG +AVV  +L+ L  +  LRLA PGEF+RRA ENG++DL
Sbjct: 61  VLTFAEKQSFTGEETVEFHLHGSVAVVAAVLDVLGGIDGLRLAEPGEFTRRALENGRLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
              E LADLI +ETE QR+ ++   SG L      W   L    + +EA +DF++EE V 
Sbjct: 121 ARVEGLADLIDAETEAQRKQALRVFSGALGGKCEAWRGLLLRAVALLEATIDFADEE-VP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV   +  +   +   I+   +GE IR+G+++ I+G  N GKS+L N+LA ++ A
Sbjct: 180 VDVSFEVTALVREVAEALEREIAGSWVGERIRSGFEVAIIGAPNVGKSTLLNSLAGREAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRDV+ + +DL G  V + DTAG+RET D VE  GI R     + ADL + L
Sbjct: 240 ITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETVDAVESIGIARARARADAADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E   K E+  P+  D I +  K+DL        ++ IS  TG G+ EL+ +I  +LS +
Sbjct: 300 VEAGEKPEMD-PRE-DDIILWAKADLLG----RVENAISGKTGAGVSELVARIGQVLSKR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCV 423
                  I +  RH   + + +  L+ A   L   +   ++ AE LR+A  +L  + G +
Sbjct: 354 VAG--AGIATRARHRQAMERGLGALQAALELLPYGEASAEVAAEELRVAIRALDSLVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE +LD IF+ FC+GK
Sbjct: 412 DVEMVLDEIFASFCLGK 428


>gi|258544267|ref|ZP_05704501.1| tRNA modification GTPase TrmE [Cardiobacterium hominis ATCC 15826]
 gi|258520505|gb|EEV89364.1| tRNA modification GTPase TrmE [Cardiobacterium hominis ATCC 15826]
          Length = 446

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 162/452 (35%), Positives = 254/452 (56%), Gaps = 18/452 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   ++TI A++T      +SIIR+SG     +   +     P PR+A+L +     G  
Sbjct: 1   MQPARDTIAAIATPPGTGGVSIIRISGGEALAIAARVSGIT-PAPRRATLAHIRDARGDT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ LL+ +P+P S+TGED+ E   HGGIAV   +L  +      RLA PGE++RRA+ N
Sbjct: 60  LDQALLLYYPAPHSYTGEDTLEIQGHGGIAVTQAVLAAVLDA-GARLAEPGEYTRRAYLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            KIDL +AE++ADLI++ ++   + +   + G+ S         L  +R +IEA LDF E
Sbjct: 119 NKIDLAQAEAIADLINARSQAAVKAANRSLQGDFSRQIETLAADLLALRIYIEAALDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +      ++   +      + + ++Q   G ++ +G  +VI G  NAGKSSL NAL 
Sbjct: 179 EE-IDFLREGDIAARLQGWGERLRTLLAQSTQGRLMNDGINLVIAGKPNAGKSSLLNALV 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT   GTTRD++   + + G  V I DTAG+RE  D+VE+EGI+RT   +  AD
Sbjct: 238 GEERAIVTAQAGTTRDIVRETILIHGMPVNILDTAGLREASDLVEQEGIRRTRQALNQAD 297

Query: 301 LILLLKE---INSKKEISFP---KNIDFIFIGTKSDLY--STYTEEYDHL-ISSFTGEGL 351
           LILLL++   ++ + + + P    +   +    K+D    +   +  D L +S+ TG G+
Sbjct: 298 LILLLRDGSALDDRGDETLPPESADTPLLLAYNKADQTPPAVQAQHADGLWLSAKTGAGI 357

Query: 352 EELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAEN 408
           + L + I  ++  +  ++ P+   + +RHL  L Q  R+ +  +A L+    G ++IAE+
Sbjct: 358 DALRDAIACAVGRDSREESPYI--ARERHLRALHQAERHYQHALAQLHASQNG-ELIAED 414

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LRLA  +LG ITG V  + LL  IFS FCIGK
Sbjct: 415 LRLAHDALGSITGAVSSDDLLGHIFSSFCIGK 446


>gi|157826149|ref|YP_001493869.1| tRNA modification GTPase TrmE [Rickettsia akari str. Hartford]
 gi|166234814|sp|A8GPN6|MNME_RICAH RecName: Full=tRNA modification GTPase mnmE
 gi|157800107|gb|ABV75361.1| tRNA modification GTPase TrmE [Rickettsia akari str. Hartford]
          Length = 445

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 161/450 (35%), Positives = 263/450 (58%), Gaps = 21/450 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKG 64
           ETIFA S+    + +++ R+SGP   +V + +  KK   PR    +     + + ++D  
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGKKAFKPRLMYYQQIIAPETKELIDNA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F  P SFTGED  E H HG  A+   ++  L  + ++RLA  GEF++RAF N K D
Sbjct: 62  MVVYFKLPNSFTGEDVVEIHTHGSKAISIMMINTLLNISDIRLAEAGEFTKRAFLNNKFD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE +ADLI++ET MQ R ++   SG L  LY  W  +L  I S +EA +DF  +ED+
Sbjct: 122 LTAAEGIADLINAETIMQHRQAIRQASGRLEELYNSWRSQLLKIISLLEAYIDFP-DEDI 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +    +V N    L N+IS++++  + GE++ +G K+ I+G  N GKSSL N L ++D+
Sbjct: 181 PDSVLNDVNNTHKNLVNEISNYLNDNRRGELLNSGLKLAIVGPPNTGKSSLLNFLMQRDI 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           A+V++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + AD+ +
Sbjct: 241 AMVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTADIKI 300

Query: 304 LL---KEINS--KKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTGEGLE 352
           ++   K+++S   ++I+   + + I I  K DL       +  ++Y  L +S      L 
Sbjct: 301 IMFDAKKLDSSINEDITGLIDENTIVIINKIDLIEPSKVFSIEDKYKCLRVSVKNNIALS 360

Query: 353 ELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
            ++  I++I  N   F + P+   +++RH ++L Q + +L   SL   D  L +  E++R
Sbjct: 361 SILKNIENIAENMAGFTETPY--ITNQRHRHYLKQALSHLTDFSL---DNDLVLATEDIR 415

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +  +G ITG ++VE++L  IF  FCIGK
Sbjct: 416 ITARCIGAITGVINVEEILGEIFQNFCIGK 445


>gi|330991277|ref|ZP_08315228.1| tRNA modification GTPase mnmE [Gluconacetobacter sp. SXCC-1]
 gi|329761296|gb|EGG77789.1| tRNA modification GTPase mnmE [Gluconacetobacter sp. SXCC-1]
          Length = 372

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 147/390 (37%), Positives = 231/390 (59%), Gaps = 28/390 (7%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ L++ FP P+S+TGEDSAE H+H G AV+N + + L  +   R A PGEFSRRAF 
Sbjct: 2   LLDRALVLWFPGPDSYTGEDSAELHLHAGQAVINAVADALVAL-GARPAEPGEFSRRAFM 60

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           +G++DL++AE +ADLI +ETE QR+ ++  + G  S LY  W D+L  + +  EA +DF 
Sbjct: 61  HGRMDLMQAEGIADLIEAETEAQRQQALSQVDGAQSRLYQHWADRLRTLLAHQEALIDFP 120

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +EE +     +E+ N +  L + + +++++G   E +R G    I+G  N GKSSL NAL
Sbjct: 121 DEE-LPPEVEQELCNGLRELHDTMQAYLAEGAGAERLRRGLVFAIVGEPNVGKSSLLNAL 179

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A +D AIV+   GTTRD + + + +    V + DTAG+RET+D +E EG++R+   V+ A
Sbjct: 180 AGRDAAIVSSRAGTTRDAIEVRMVMGNVPVTLVDTAGLRETEDEIEAEGVRRSLFHVKQA 239

Query: 300 DLILLLKEINSKKEISFPKNIDF--IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
           D ++ +   N       P ++D   + +  K+DL  T   +    IS  T  G++ L   
Sbjct: 240 DCVVQVFAGNPA-----PPSLDGADVLVCNKTDL--TPAPDGAIGISVLTNTGMDVL--- 289

Query: 358 IKSILSNKFKKL-------PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
            +++L++K + L       PF   +  RH   + +TVR++  A         ++  E +R
Sbjct: 290 -RTVLADKARALTAGRAVAPF---TRARHRAAIEETVRHIGQALAMPWP---EMRGEEMR 342

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  +LG++TG VDVE LLD +F +FCIGK
Sbjct: 343 LAMRALGRLTGAVDVEALLDTVFGQFCIGK 372


>gi|157829012|ref|YP_001495254.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933734|ref|YP_001650523.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Iowa]
 gi|166234817|sp|A8GTM1|MNME_RICRS RecName: Full=tRNA modification GTPase mnmE
 gi|189036206|sp|B0BV57|MNME_RICRO RecName: Full=tRNA modification GTPase mnmE
 gi|157801493|gb|ABV76746.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908821|gb|ABY73117.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Rickettsia rickettsii str. Iowa]
          Length = 445

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 162/456 (35%), Positives = 256/456 (56%), Gaps = 33/456 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD----GRIL 61
           ETIFA S+    + +++ R+SGP   +V + +  +K     K+ L Y+  +       ++
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELI 58

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  +++ F SP SFTGED  E H HG  A+   +   L  +  +RLA  GEF++RAF N 
Sbjct: 59  DNVMVVYFKSPGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNN 118

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL  AE +ADLI++ET MQ + ++   SG+L +LY  W  +L  I S +EA +DF  +
Sbjct: 119 KLDLTAAEGIADLINAETIMQHKQAIRQASGKLEALYNNWRSQLLKILSLLEAYIDFP-D 177

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+ +    EV N    L N IS +++  + GE++R+G K+ I+G  N GKSSL N L +
Sbjct: 178 EDIPDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQ 237

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300
           +D+AIV++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + AD
Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTAD 297

Query: 301 LILLL-------KEIN-------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           + +++         IN        +  I+    ID I     S ++S   +     +S  
Sbjct: 298 IKIIMFDAEKLDSSINEDIINLIDENTITIINKIDLI---EASKIFSIENKYKCLRVSVK 354

Query: 347 TGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
               L  ++  I++I  N   F + P+   +++RH  +L Q + +L   SL   D  L +
Sbjct: 355 NNIALSSILKNIENIAENMAGFTETPY--ITNQRHRNYLQQALSHLTAFSL---DNDLVL 409

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E++R+ +  +G ITG ++VE++L  IF  FCIGK
Sbjct: 410 ATEDIRMTARCIGAITGVINVEEILGEIFKNFCIGK 445


>gi|258626075|ref|ZP_05720926.1| tRNA modification GTPase [Vibrio mimicus VM603]
 gi|258581601|gb|EEW06499.1| tRNA modification GTPase [Vibrio mimicus VM603]
          Length = 464

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 251/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP   QV + +  +    PR A    F   +G+ LD+G+
Sbjct: 15  DTIVAQATAPGRGGVGIIRVSGPLAAQVAQTVTGRTL-RPRYAEYLPFTDENGQQLDQGI 73

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 74  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDL 133

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 134 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 192

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 193 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 252

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 253 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 312

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E    +EI        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 313 VDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 372

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G++ L   +K  +     +      + +RHL  L +   +L++     E     +I+AE
Sbjct: 373 QGVDALRQHLKECMGFAGNQ-EGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEILAE 431

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 432 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464


>gi|319639448|ref|ZP_07994198.1| tRNA modification GTPase mnmE [Neisseria mucosa C102]
 gi|317399343|gb|EFV80014.1| tRNA modification GTPase mnmE [Neisseria mucosa C102]
          Length = 454

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 166/458 (36%), Positives = 258/458 (56%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  + TI A++T      + +IRLSG +   + + +   K P PR A    F G DG+ 
Sbjct: 1   MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLVQTLSGGKTPKPRTALYTDFLGGDGQP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+L+ F +P SFTGED  E   HGG  V++ +L    ++   R+A PGEF++RAF N
Sbjct: 61  IDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + ++   R+++  + G  S    + +D L  +R  +EA LDF E
Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  + + ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 180 E-DIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D+AIVTDI GTTRD +   + L+G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298

Query: 301 LILLL----KEINSKKEI---SFPKNIDFIFIGTKSDLYS-TYTEEYDHL---------- 342
           + L+L    + +N+K +    S P+ +  I I  K+DL         D L          
Sbjct: 299 VALILIDPREGVNAKTQAILNSLPEGLKKIEIHNKADLTGEPVAVRSDGLAQTGADTVIS 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TG GL+ L + +   +  + +     + +  RHL  L +    LE A+L + +  +
Sbjct: 359 LSAKTGAGLDLLKHALLQEVGWQGESESLFL-ARSRHLNALHEAEAELENAALCDNNQ-I 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ AE+LRLA  +  +ITG    + LL +IFS+FCIGK
Sbjct: 417 ELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454


>gi|312882243|ref|ZP_07741989.1| tRNA modification GTPase TrmE [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370087|gb|EFP97593.1| tRNA modification GTPase TrmE [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 453

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 166/457 (36%), Positives = 249/457 (54%), Gaps = 29/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP   QV   I  K    PR A    F   DG  +D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPLATQVASEITGKDL-RPRYAEYLAFKAQDGTEIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ +++ +  +P LR A PGEFS RAF N K+DL
Sbjct: 63  ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTIPGLRTARPGEFSERAFLNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + ++  + G  S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 AQAEAIADLIDASSEEAAKSALMSLQGAFSGRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVAGDLQSIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWEEISQADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
            +  + +E              P NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 302 VDGTTTQETDPKQIWPDFIDRLPDNIGITVIRNKADQTDEPLGICHVNDPTLIRLSAKTG 361

Query: 349 EGLEELINKIKSIL----SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           EG+E L   +K  +    SN+   +     + +RHL  L +   +L++     E     +
Sbjct: 362 EGVESLRLHLKQCMGFSGSNEGGFM-----ARRRHLEALDRAAEHLQIGQQQLESYMAGE 416

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 417 ILAEELRITQQHLSEITGEFSSDDLLGRIFSSFCIGK 453


>gi|157373142|ref|YP_001471742.1| tRNA modification GTPase TrmE [Shewanella sediminis HAW-EB3]
 gi|189036210|sp|A8FP41|MNME_SHESH RecName: Full=tRNA modification GTPase mnmE
 gi|157315516|gb|ABV34614.1| tRNA modification GTPase TrmE [Shewanella sediminis HAW-EB3]
          Length = 453

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 254/454 (55%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG    +V   +     P  R A    F   +G ++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDQASEVAMALLGHI-PKTRYADYCDFKDGEGEVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALYFQGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVEGIRIAKPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + ++  + GE S+   + +D++T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALNSLQGEFSTQVHELVDRVTNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +   + S  +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIAGSLYRIITKLDSVQASAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+E AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTADTVEQIGIERAWAEIETADQVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348
            +  +   +             P+ +    +  K+D+     T T+++ H    IS+ TG
Sbjct: 302 VDGTTTDAVDPHEIWPDFIDRLPEKLGITVVRNKADITGEALTVTQDHGHNVFRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
            G+EEL   +KS++  +   L     + +RHL  L     +L +    L     G +++A
Sbjct: 362 LGVEELQQHLKSLMGYQ-SNLEGGFIARRRHLEALELATSHLMIGKEQLEVYQAG-ELLA 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 420 EELRMTQMALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|298369774|ref|ZP_06981091.1| tRNA modification GTPase TrmE [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282331|gb|EFI23819.1| tRNA modification GTPase TrmE [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 454

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 166/458 (36%), Positives = 257/458 (56%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  + TI A++T      + +IRLSG +   + + +   K P PR A    F G DG+ 
Sbjct: 1   MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGQP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+L+ F +P SFTGED  E   HGG  V++ +L    ++   R+A PGEF++RAF N
Sbjct: 61  IDNGILLYFAAPASFTGEDVVELQGHGGPVVMDMLLSRCLEL-GARMAQPGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + ++   R+++  + G  S    + +D L  +R  +EA LDF E
Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSRHIHELVDDLITLRMLVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  + + ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 180 E-DIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D+AIVTDI GTTRD +   + L+G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298

Query: 301 LILLL----KEINSKKEI---SFPKNIDFIFIGTKSDLYST---------YTEEYDHLI- 343
           + L+L    + +N+K +    S P  +  I I  K+DL                 D +I 
Sbjct: 299 VALILIDPREGVNAKTQAILNSLPAGLKKIEIHNKADLTGEPVAVRSGGLAQTGADTVIS 358

Query: 344 -SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
            S+ TG GL+ L + +   +  + +     + +  RHL  L +    LE A+L + +  +
Sbjct: 359 LSAKTGAGLDLLKHALLQEVGWQGESESLFL-ARSRHLNALHEAEAELENAALCDNNQ-I 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ AE+LRLA  +  +ITG    + LL +IFS+FCIGK
Sbjct: 417 ELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454


>gi|146295079|ref|YP_001185503.1| tRNA modification GTPase TrmE [Shewanella putrefaciens CN-32]
 gi|166991116|sp|A4YCM1|MNME_SHEPC RecName: Full=tRNA modification GTPase mnmE
 gi|145566769|gb|ABP77704.1| tRNA modification GTPase trmE [Shewanella putrefaciens CN-32]
          Length = 453

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 163/453 (35%), Positives = 255/453 (56%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P  R A    F    G+++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDKATDVAMAVLGHL-PKTRYADYCDFKNATGQVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S    + +D++T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  + + +S+  +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIANALYKIIDKLSTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348
            +  +   +             P N+    I  K+DL       TEE     + IS+ TG
Sbjct: 302 VDGTTTDAVDPHDIWPDFINRLPANLGVTVIRNKADLTGENLDMTEEKGYSVYRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G++EL   +KS++  +   L     + +RHL  L     +L++     E     +++AE
Sbjct: 362 LGVDELKLHLKSLMGYQ-SNLEGGFIARRRHLEALDVAASHLQLGKEQLEVYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|261365695|ref|ZP_05978578.1| tRNA modification GTPase TrmE [Neisseria mucosa ATCC 25996]
 gi|288565791|gb|EFC87351.1| tRNA modification GTPase TrmE [Neisseria mucosa ATCC 25996]
          Length = 454

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 166/458 (36%), Positives = 258/458 (56%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  + TI A++T      + +IRLSG +   + + +   K P PR A    F G DG+ 
Sbjct: 1   MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGQP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+L+ F +P SFTGED  E   HGG  V++ +L    ++   R+A PGEF++RAF N
Sbjct: 61  IDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + ++   R+++  + G  S    + +D L  +R  +EA LDF E
Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  + + ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 180 E-DIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D+AIVTDI GTTRD +   + L+G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298

Query: 301 LILLL----KEINSKKEI---SFPKNIDFIFIGTKSDLYS-TYTEEYDHL---------- 342
           + L+L    + +N+K +    S P+ +  I I  K+DL         D L          
Sbjct: 299 VALILIDPREGLNAKTQAILNSLPEGLKKIEIHNKADLTGEPVAVRSDGLAQTGADTVIS 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TG GL+ L + +   +  + +     + +  RHL  L +    LE A+L + +  +
Sbjct: 359 LSAKTGAGLDLLKHALLQEVGWQGESESLFL-ARSRHLNALHEAEAELENAALCDNNQ-I 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ AE+LRLA  +  +ITG    + LL +IFS+FCIGK
Sbjct: 417 ELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454


>gi|195450224|ref|XP_002072419.1| GK22335 [Drosophila willistoni]
 gi|194168504|gb|EDW83405.1| GK22335 [Drosophila willistoni]
          Length = 507

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 162/492 (32%), Positives = 257/492 (52%), Gaps = 68/492 (13%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK----------KPFPRKASLRYFF-G 55
           TI+++S+G +   +S+IRLSGP   Q    I              +P PR+A L+ F+  
Sbjct: 26  TIYSLSSGHVKCGVSVIRLSGPRTKQALRAIIASGSKNTQNGFEFEPKPRQAYLKSFYHP 85

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           +   ++D+GLL+ FP P SFTGEDS EF VHG +AV+  +L+ L +   LR A PGEF++
Sbjct: 86  VSKEMIDRGLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGQCDGLRPAEPGEFTK 145

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF  GK+DL E E LADLI +ETE QR+ ++   +G L+ LY  W  +L    + +EA 
Sbjct: 146 RAFFGGKLDLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDSWRKRLIRCAAHLEAY 205

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF+EEE ++     ++  ++  +K +I  H++  + GE++R+G +  I+G  N GKSSL
Sbjct: 206 IDFAEEEQIEGGVILQLTRELNTVKAEIRDHLNDQRQGELLRDGVRTCIVGAPNVGKSSL 265

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFL 294
            N L ++ V+IVT   GTTRD++    +  GY V  +DTAG+R +T D +E EG++R   
Sbjct: 266 LNMLCQRSVSIVTPQAGTTRDIIETMHNFGGYPVVFADTAGLRRQTSDAIELEGMQRAKQ 325

Query: 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSFTGEG 350
            +  +DLILL+ +    +E++           ++S   + Y E+Y    D  +  + G  
Sbjct: 326 WINQSDLILLVAD---ARELA-------TLDSSQSKSLTNYIEKYLNDLDIQLDLYNGNV 375

Query: 351 LEELINKIKSILSNKFKKL------------------------------------PFSIP 374
           L+ + NK  ++ +++ K L                                    P +  
Sbjct: 376 LKLVANKTDTLTTDELKNLHKLSNILTISCLQPTNEALQRFLQALEQQLQQLCGTPRAEH 435

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLD------IIAENLRLASVSLGKITGCVDVEQL 428
               H+ +  Q  R +E   +   D   D      I A+ LR +   + +ITG V  E +
Sbjct: 436 PRITHMRYRQQLERCIEHIDIFLSDYKPDVYPDMAIAAQKLRQSVRCIERITGHVSCEDI 495

Query: 429 LDIIFSKFCIGK 440
           LD++F  FCIGK
Sbjct: 496 LDVVFKDFCIGK 507


>gi|145344534|ref|XP_001416786.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577012|gb|ABO95079.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 489

 Score =  258 bits (660), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 165/489 (33%), Positives = 252/489 (51%), Gaps = 58/489 (11%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--------------- 49
           +ETI+A++T    + +S++R+SGP+           + P    +S               
Sbjct: 6   RETIYALATARGRAGVSVVRVSGPNARDALRLT---RPPGGANSSDGAATAAEHGRLRLV 62

Query: 50  --LRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107
              R     D   +D G + VF SP SFTGED  E H HG  AV   +++ L  + N R+
Sbjct: 63  EFARGDAARDEPPIDVGFVAVFASPRSFTGEDVVELHAHGSAAVQRALMDALGTLDNFRV 122

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSME-GMSGELSSLYGQWIDKLT 166
           A  GEFSRRAF NGK+DL +AE LADL+ ++TE QRR +M    +    S+Y  W  +L 
Sbjct: 123 AEAGEFSRRAFRNGKMDLTQAEGLADLLDADTEAQRRQAMMLSRNAAQRSMYETWRKELL 182

Query: 167 HIRSFIEADLDFSEEEDV-QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
              ++ EA LDF EEED+  +   ++V   +  L++ +  ++     GE+IR G ++ ++
Sbjct: 183 TCAAYCEAALDFGEEEDIASDVVERKVRERVKALRDTLQKYLDAPARGELIRRGVRVALV 242

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  N GKSS+ NALA +D AIV+   GTTRDVL + L+L GY V +SDTAG+RET+D VE
Sbjct: 243 GSPNVGKSSMLNALAGRDAAIVSPHAGTTRDVLEVSLELGGYKVIVSDTAGLRETEDDVE 302

Query: 286 KEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYS------ 333
           K GI R     E+AD+++ L +  +       K ++  K    + +  KSD  S      
Sbjct: 303 KLGIARALERAEDADVVVALADATNDASNIDLKALNLSKKT-IVNVWNKSDALSDGQTRE 361

Query: 334 -------TYTEEYD-HLISSFTGEGLEELINKIKSILSNK---------FKKLPFSIPSH 376
                  T  + Y+  ++S  TG GL+  I+ +  I++ K               +I + 
Sbjct: 362 LMEIENETAADGYETAVVSCLTGAGLDGFISTLTRIVAQKCTIGDDASDANDSTLAI-TR 420

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV-----SLGKITGCVDVEQLLDI 431
            RH  +L++ V  L+ A    +       A  L    +     +LG++TG  DVE +LD+
Sbjct: 421 SRHRVNLARCVASLDAAVARARASSASASALELEAEELKLAARALGRVTGAYDVEDVLDV 480

Query: 432 IFSKFCIGK 440
           +F  FC+GK
Sbjct: 481 VFRDFCVGK 489


>gi|152981181|ref|YP_001355383.1| tRNA modification GTPase TrmE [Janthinobacterium sp. Marseille]
 gi|205829159|sp|A6T4D6|MNME_JANMA RecName: Full=tRNA modification GTPase mnmE
 gi|151281258|gb|ABR89668.1| tRNA modification GTPase [Janthinobacterium sp. Marseille]
          Length = 465

 Score =  258 bits (660), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 167/468 (35%), Positives = 251/468 (53%), Gaps = 31/468 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP--FPRKASLRYFFGLDG 58
           MN +   I A++T      I ++R+SG +   + E +C  K     PR A+   F   DG
Sbjct: 1   MNFDSSPIAAIATAPGRGGIGVVRVSGKNISSIIEAVCATKGAELQPRHATFTNFVNADG 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
            ++D+GL I F +P S+TGED  E   HGG  V+  +L    E      LR+A PGEF+ 
Sbjct: 61  SVIDQGLAIYFKAPHSYTGEDVLELQGHGGPIVLQMLLTRCLEAGTDIGLRMAQPGEFTH 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE + DLI + TE   + + + +SG  S      +DK+T++R  +EA 
Sbjct: 121 RAFLNDKLDLAQAEGVIDLIEASTEAAAKSASQSLSGAFSKTIQDLVDKITNLRMLVEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +      +    +  ++  + +  +Q   G ++R+G  IV+ G  N GKSSL
Sbjct: 181 LDFPEEE-IDFLEKSDARGQLNGIREALQAVFTQASQGALLRDGLNIVLAGQPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRT 292
            NALA  DVAIVT I GTTRD +   + +EG  V + DTAGIR+  D    VE+ GI+RT
Sbjct: 240 LNALAGSDVAIVTAIAGTTRDKVIETIQIEGIPVNVIDTAGIRDASDATDEVERIGIERT 299

Query: 293 FLEVENADLILLLKEIN-----SKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDHL--- 342
           +  V+ AD+I+ + + N     + ++I   FP+NI  + I  K DL S +    D +   
Sbjct: 300 WAAVKTADVIIHMLDANRGPTRADEQIVERFPENIPVMRIWNKIDL-SGHRPAIDRMPDS 358

Query: 343 ----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               +S+   +G++ L  ++  ++  +       + + +RHL  L     +LEMA+ +  
Sbjct: 359 THIYVSATDLQGMDLLRGELLRLIGWQQTGESLYL-ARERHLVALKSAHDHLEMAAQHAA 417

Query: 399 ------DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 D  LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 418 HDSEATDPALDLFAEELRLAQERLSSITGEFTSDDLLGVIFSRFCIGK 465


>gi|327482917|gb|AEA77324.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
           LMA3894-4]
          Length = 453

 Score =  258 bits (660), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 250/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T    S + IIR+SGP    V + +  +    PR A    F   DG+ LD+G+
Sbjct: 4   DTIVAQATAPGRSGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 63  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E    ++I        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 302 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G++ L   +K  +     +      + +RHL  L +   +L +     E     +I+AE
Sbjct: 362 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|262402089|ref|ZP_06078653.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC586]
 gi|262351735|gb|EEZ00867.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC586]
          Length = 453

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 250/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPLSAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 63  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E    +EI        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 302 VDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G++ L   +K  +     +      + +RHL  L +   +L++     E     +I+AE
Sbjct: 362 QGVDALRQHLKECMGFAGNQ-EGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEILAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|261346747|ref|ZP_05974391.1| tRNA modification GTPase TrmE [Providencia rustigianii DSM 4541]
 gi|282565147|gb|EFB70682.1| tRNA modification GTPase TrmE [Providencia rustigianii DSM 4541]
          Length = 454

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 168/454 (37%), Positives = 249/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SGP    V E +  K  P PR A    F  +DG +LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGPKAALVAETVLGKL-PKPRYAEYLPFRDVDGSVLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I FP P SFTGED  E   HGG  +++ +L  +  +  +R+ANPGEFS RAF N K+DL
Sbjct: 64  AIYFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTIGAIRIANPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M  + G  SS   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  + +D+    SQ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEAKLNEVVDDLEQVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFM 302

Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-----EYDHL-ISSFTG 348
                      +EI  +     P+ +    I  K+D      E      Y  + +S+   
Sbjct: 303 VDSTTTDATEPQEIWPEFMARLPETLPVTVIRNKADKTGESIEFVADVRYPLIRLSAREE 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           +G++ L + +K  +            + +RHL  L+    +L      L     G +++A
Sbjct: 363 KGIDLLRDHLKETMGFS-GNTEGGFLARRRHLQALNNAATHLAQGYDQLVNARSG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA + L +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQLELSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|120613418|ref|YP_973096.1| tRNA modification GTPase TrmE [Acidovorax citrulli AAC00-1]
 gi|205829049|sp|A1TWI4|MNME_ACIAC RecName: Full=tRNA modification GTPase mnmE
 gi|120591882|gb|ABM35322.1| tRNA modification GTPase trmE [Acidovorax citrulli AAC00-1]
          Length = 482

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 165/486 (33%), Positives = 247/486 (50%), Gaps = 51/486 (10%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     + E +C +    PR+A+   F    G+ 
Sbjct: 2   LPRHTDPIAAIATAPGRGAVGIVRVSGRGIGPLVEALCGRAL-RPREATYLPFRDAGGQA 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-------------AKMPNLRL 107
           +D+GL + FP+P S+TGED  E   HGG  V+  +L                 ++P LRL
Sbjct: 61  IDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLQAAGEADRATGRPRLPGLRL 120

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEF+ RAF N KIDL +AE++ADLI + TE   R +   ++G  S    +  D L H
Sbjct: 121 ARPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLAGAFSDEIHRLRDALVH 180

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA LDF EEE +      +    +  L+  ++  + + + G ++R G K+VI G 
Sbjct: 181 LRMLVEATLDFPEEE-IDFLRKADAHGQLAALQRTLAEVMGRTRQGALLREGIKVVIAGQ 239

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+RE+DD VE+ 
Sbjct: 240 PNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESDDEVERI 299

Query: 288 GIKRTFLEVENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSD-- 330
           GI+R + E+  AD +L L ++    +  +               P ++  + +  KSD  
Sbjct: 300 GIERAWQEIAAADAVLFLHDLTRAGQPDYEAADAEIAARLARMAPAHVPVVDVWNKSDRA 359

Query: 331 ------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHK 377
                         S         +S+ TGEGL+ L   +  I    ++  P  I  +  
Sbjct: 360 EGSAAAGQGGVATASASGRAAAVRLSARTGEGLDGLRRVLLDIAG--WQSAPEGIYTARA 417

Query: 378 RHLYHLSQTVRYLEMASLNEKDC---GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFS 434
           RHL  L     +L M +  +  C    LD++AE LRLA  +L  ITG    + LL +IFS
Sbjct: 418 RHLEALRAVDMHL-MEAAAQLQCDGPALDLLAEELRLAQQALNAITGEFTSDDLLGVIFS 476

Query: 435 KFCIGK 440
            FCIGK
Sbjct: 477 SFCIGK 482


>gi|126668974|ref|ZP_01739913.1| tRNA modification GTPase [Marinobacter sp. ELB17]
 gi|126626558|gb|EAZ97216.1| tRNA modification GTPase [Marinobacter sp. ELB17]
          Length = 456

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 164/460 (35%), Positives = 249/460 (54%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH  ETI A++T    + + I+R+SGP    +   +     P PR A    F      +
Sbjct: 1   MNHPTETIAAIATAPGQAGVGIVRVSGPQATVIAHSLLGYA-PKPRYAHYGPFKDSQDEL 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + FP+P SFTGED  E   HGG  +++ +L E+  +   RLA PGEFS RAF N
Sbjct: 60  IDEGIGLFFPNPYSFTGEDVFELQGHGGTVILDLLLREVCAL-GARLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI S +E   R ++  M G  S      +D +TH+R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIESSSEQAARCAVRSMQGVFSRRIETLVDAVTHLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +  +V  D+  L++ +   + + + G I+R+G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGKVATDLQSLRDQLQGIMLEAQQGTIMRDGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT I GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI R + E+  AD
Sbjct: 238 GREAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDEVEQIGIARAWDEIRQAD 297

Query: 301 LILLLKEINSKKEIS----FPKNID-------FIFIGTKSDLYS------TYTEEYDHLI 343
            ILL+ +  +    S    +P  ID          I  K DL          + +   +I
Sbjct: 298 RILLMVDATTTDRTSPHEIWPDFIDQLPAAAPITVIRNKVDLSGESVGLIELSPQQAPVI 357

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
             ++ +  GL+ L + +K  +            + +RHL  L +   +L       +  G
Sbjct: 358 RLAAKSSAGLDALRDHLKQCMGFA-STTEGGFLARRRHLDALERAAEFLVQGQTQLEGYG 416

Query: 402 L-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE+LR A  +LG+ITG +  + LL  IF  FCIGK
Sbjct: 417 AGELLAEDLRAAQSALGEITGQITPDDLLGKIFGSFCIGK 456


>gi|89902988|ref|YP_525459.1| tRNA modification GTPase TrmE [Rhodoferax ferrireducens T118]
 gi|122478002|sp|Q21QM5|MNME_RHOFD RecName: Full=tRNA modification GTPase mnmE
 gi|89347725|gb|ABD71928.1| tRNA modification GTPase trmE [Rhodoferax ferrireducens T118]
          Length = 469

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 165/472 (34%), Positives = 255/472 (54%), Gaps = 37/472 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +   ++ I A++T     A+ I+R+SG S   + + +  ++    R+A+   F       
Sbjct: 3   LPRHQDPIVAIATAPGRGAVGIVRVSGKSIGSLMQALLGRQL-RAREATYLPFLDRSQLA 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGIL----------EELAKMP---NLRL 107
           +D+G+ + FP+P SFTGED  E   HGG  V+  +L          + +++MP    LR 
Sbjct: 62  IDQGIALYFPAPHSFTGEDVLELQAHGGPVVLQLLLARCLEAGAELDPVSQMPRLVGLRP 121

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEFS RAF N KIDL +AE++ADLI + TE   R +   +SG  S       + L H
Sbjct: 122 ALPGEFSERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSQEIHILREALIH 181

Query: 168 IRSFIEADLDFSEEED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
           +R  +EA LDF EEE   ++   ++  L+D   L+  + S + +   G ++R G  +VI 
Sbjct: 182 LRMLVEATLDFPEEEIDFLRQADARGQLSD---LQQSLQSVLQKASQGALLREGITVVIA 238

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  N GKSSL NALA  ++AIVT I GTTRD +   + +EG  V + DTAG+R++DD++E
Sbjct: 239 GQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPVHVIDTAGLRDSDDVIE 298

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSD 330
           K GI RT+  +E AD +L L ++  K    +                 ++  I I  K+D
Sbjct: 299 KIGIARTWDVIEAADAVLFLHDLTRKNATDYIAADAVIAEAIAGKLSASVPVIEIWNKAD 358

Query: 331 LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
           +     ++    +S+ TG GL+ L  K+  ++  + K     + + +RH+  L +T  +L
Sbjct: 359 VIDRPCQQAGLQLSAKTGAGLDTLRRKLLELVGWQSKPEGVYM-ARERHVQALHRTAAHL 417

Query: 391 EMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             A   L  K   LD++AE LRLA  +LG+ITG    + LL +IFS+FCIGK
Sbjct: 418 MTAGFHLEAKAQALDLLAEELRLAQNALGEITGDFSSDDLLGVIFSRFCIGK 469


>gi|160877621|ref|YP_001556937.1| tRNA modification GTPase TrmE [Shewanella baltica OS195]
 gi|189036207|sp|A9KX19|MNME_SHEB9 RecName: Full=tRNA modification GTPase mnmE
 gi|160863143|gb|ABX51677.1| tRNA modification GTPase TrmE [Shewanella baltica OS195]
 gi|315269820|gb|ADT96673.1| tRNA modification GTPase TrmE [Shewanella baltica OS678]
          Length = 453

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 253/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P  R A    F    G+++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDKASDVAMAVLGHL-PKTRYADYCDFKSASGQVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S    + +D++T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  + + +    +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T+D VE+ GI+R + E+ +AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTNDTVEQIGIERAWNEINSADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348
            +  +   +             P N+    I  K+DL       TEE     + IS+ TG
Sbjct: 302 VDGTTTAAVDPHTIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++AE
Sbjct: 362 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|323496919|ref|ZP_08101947.1| tRNA modification GTPase TrmE [Vibrio sinaloensis DSM 21326]
 gi|323317993|gb|EGA70976.1| tRNA modification GTPase TrmE [Vibrio sinaloensis DSM 21326]
          Length = 453

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 247/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V   +  K    PR A    F   DG  +D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPLAATVALEVTGKTL-RPRYAEYLPFTATDGTQIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ +++ +  +P +R A PGEFS RAF N K+DL
Sbjct: 63  ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILDIPGIRTARPGEFSERAFLNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + G  S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 AQAEAIADLIDASSEEAAKSALQSLQGAFSQRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVSADLQAIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKS-----DLYSTYTEEYDHL-ISSFTG 348
                 +    KEI        P NI    I  K+     DL   +  +   + +S+ TG
Sbjct: 302 VDGTTTDATDPKEIWPDFVDRLPDNIGMTVIRNKADQTNEDLGICHVNDPTLIRLSAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G+E L N +K  +            + +RHL  L +   +L++     E     +I+AE
Sbjct: 362 QGVESLRNHLKECMGFAGGN-EGGFMARRRHLEALERAAEHLDIGQQQLEGYMAGEILAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRIAQQHLSEITGEFSSDDLLGRIFSSFCIGK 453


>gi|260774545|ref|ZP_05883458.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio metschnikovii
           CIP 69.14]
 gi|260610451|gb|EEX35657.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio metschnikovii
           CIP 69.14]
          Length = 453

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 166/457 (36%), Positives = 252/457 (55%), Gaps = 29/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF---PRKASLRYFFGLDGRILD 62
           +TI A +T      + IIR+SGP       F+ K+       PR A    F   DG  LD
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPQA----AFVAKQVTGMDLKPRYAKYLPFKDADGAELD 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP+P SFTGED  E   HGG  V++ +++ +  +P LR A PGEFS RAF N K
Sbjct: 60  QGIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILAIPGLRPARPGEFSERAFLNDK 119

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF EEE
Sbjct: 120 LDLTQAEAIADLIDASSEQAAKSALQSLQGQFSKRINTLVESLIHLRIYVEAAIDFPEEE 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K
Sbjct: 180 -IDFLADGKVSADLQAIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E++ AD +
Sbjct: 239 DSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWEEIKQADRV 298

Query: 303 LLLKEINSKKEISFPKNI--DFI----------FIGTKSD-----LYSTYTEEYDHL-IS 344
           L + +  +  E + PK+I  DF+           I  K D     L   +  +   + +S
Sbjct: 299 LFMVD-GTTTEATDPKDIWPDFVDRLPDQMGMTVIRNKVDQTGETLGVCHASQPTLIRLS 357

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TG+G+E L   +K  +     +      + +RHL  L +   +L +     E     +
Sbjct: 358 AKTGQGVEALRTHLKECMGFTGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGE 416

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 417 ILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|160872053|ref|ZP_02062185.1| tRNA modification GTPase TrmE [Rickettsiella grylli]
 gi|159120852|gb|EDP46190.1| tRNA modification GTPase TrmE [Rickettsiella grylli]
          Length = 462

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 170/455 (37%), Positives = 253/455 (55%), Gaps = 24/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T      I++IR+SG +  ++   + ++  P  R A    F   DG ++D+GL
Sbjct: 12  ETIVALATPQGRGGIAVIRISGSTIKRIANQLLRRA-PRKRYAEYCSFLAKDGSLIDQGL 70

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  VV+ +L+ + ++   RLA PGEF+ RAF N K+DL
Sbjct: 71  ALYFPAPHSFTGEDVLELQCHGGPIVVDCLLKRVLQL-GARLARPGEFTERAFLNAKLDL 129

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ADLI++E+E   R +M  + G+ S    Q  D +  +R ++EA +DFS+E ++ 
Sbjct: 130 VQAEAIADLINAESEQAARAAMRSLQGDFSLRINQIRDSIIELRMWLEASIDFSDE-NID 188

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                +VL  +  +  DI +  +  K G +++ G  + I+G  NAGKSSL N L+ K+ +
Sbjct: 189 CLKDGDVLTRLNSILTDIQNIKNLAKQGTLLQEGINLAIVGPPNAGKSSLLNRLSLKEAS 248

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT   GTTRDV+   + +EG L+ I DTAG+R T D +EKEGIKRT  E+  A+LIL +
Sbjct: 249 IVTSFAGTTRDVIREKIQIEGLLIHIVDTAGLRITIDEIEKEGIKRTLAEIAKANLILWV 308

Query: 306 KEINS---------KKEISFPKNI----DFIFIGTKSDLYSTYTEEYDHL------ISSF 346
            + N+         K++  F KNI      + I  K DL          L      +S+ 
Sbjct: 309 VDHNTTRHEDLIFWKEQELFLKNIFLDNRILIIRNKIDLSQENARIEKELNFNVIKLSAK 368

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DII 405
           TGEG   L N +K+  +        +  + +RHL  LS T   L  A    K+    ++I
Sbjct: 369 TGEGFSLLYNYLKN-YAGYTNSSESNFSARRRHLDALSHTQMTLNKALKKIKENTFSELI 427

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+L +A   LG+ITG      LL  IFS FCIGK
Sbjct: 428 AEDLAMAQNFLGEITGHFTTHDLLGKIFSNFCIGK 462


>gi|213155396|ref|YP_002317441.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB0057]
 gi|213054556|gb|ACJ39458.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB0057]
          Length = 406

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/410 (39%), Positives = 240/410 (58%), Gaps = 22/410 (5%)

Query: 48  ASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107
           A  R F+  DG I+D+G+++ FP+P SFTGED  E   HGG  + N +L  L ++  +  
Sbjct: 2   AGFRKFYDTDGSIMDEGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAIA- 60

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A  GEFS RAFENGK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL H
Sbjct: 61  AKAGEFSMRAFENGKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIH 120

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA +DF EEE +   +  ++L  +  ++  + +  +  + G+++R G ++VI G 
Sbjct: 121 LRLHVEAAIDFPEEE-IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGK 179

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL NALA  + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKE
Sbjct: 180 PNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKE 239

Query: 288 GIKRTFLEVENADLILLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEE 338
           GI+R   E+E ADL+LL+ ++N         +  F ++I+    + IG K DL     E 
Sbjct: 240 GIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEI 299

Query: 339 YD-----HLISSFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
            D     H+  S   E G++ L++ I +     F     +  +  RHL  + +T  YL  
Sbjct: 300 SDYQGFRHITVSAKQEMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAE 357

Query: 393 A--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   L   + G +++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 358 AREQLVIFNAG-ELVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 406


>gi|229515956|ref|ZP_04405413.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TMA
           21]
 gi|229347056|gb|EEO12018.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TMA
           21]
          Length = 453

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 162/454 (35%), Positives = 249/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+G+
Sbjct: 4   DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 63  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISSFT 347
                 E    ++I        P+NI    I  K+D  +    E  H+       +S+ T
Sbjct: 302 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKAD-QTGEPLEICHVNQPTLIRLSAKT 360

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           G+G++ L   +K  +     +      + +RHL  L +   +L +     E     +I+A
Sbjct: 361 GQGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILA 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 420 EELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|304412701|ref|ZP_07394304.1| tRNA modification GTPase TrmE [Shewanella baltica OS183]
 gi|304348911|gb|EFM13326.1| tRNA modification GTPase TrmE [Shewanella baltica OS183]
          Length = 453

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 253/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P  R A    F    G+++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDKASDVAMAVLGHL-PKTRYADYCDFKSASGQVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S    + +D++T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  + + +    +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348
            +  +  ++             P N+    I  K+DL       TEE     + IS+ TG
Sbjct: 302 VDGTTTADVDPHTIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++AE
Sbjct: 362 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|205829067|sp|A1WDB4|MNME_ACISJ RecName: Full=tRNA modification GTPase mnmE
          Length = 466

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 167/468 (35%), Positives = 246/468 (52%), Gaps = 31/468 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     + + +C +    PR+A+   F    G+ 
Sbjct: 2   LPRHSDPIVAIATAPGRGAVGIVRVSGKQIGALVQALCGRALK-PREATYLPFRDAAGQA 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAK--MPNLRLANPGEFSR 115
           +D+GL + FP+P S+TGED  E   HGG  V+  +L    E A+  +P LRLA PGEF+ 
Sbjct: 61  IDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQGLLPRLRLAEPGEFTE 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N KIDL +AE++ADLI + TE   R +   +SG+ S       D L H+R  +EA 
Sbjct: 121 RAFLNDKIDLAQAEAIADLIDASTEAAARGASRSLSGDFSREIHTLRDALVHLRMLVEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +      +    +  LK  ++  + +   G ++R G K+VI G  NAGKSSL
Sbjct: 181 LDFPEEE-IDFLRKADASGQLSNLKRSLARVMQRASQGALLREGIKVVIAGQPNAGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+RE+DD VE+ GI R + E
Sbjct: 240 LNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESDDEVERIGIARAWDE 299

Query: 296 VENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSDLYSTYT---- 336
           +  AD +L L ++       +               P  +  + +  K+D          
Sbjct: 300 IAGADAVLFLHDLTRWGSAQYQDDDAAIAHTLSNRLPAGVPVVDVWNKADAAPQAAAPAR 359

Query: 337 --EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMA 393
             E    L+S+ TG+GL+ L  ++  I   +       I +  RH+  L     +L E A
Sbjct: 360 EGESQAVLLSARTGQGLDTLRRQLLQIAGWQSAAEGVYI-ARARHIEALRAVDAHLMEAA 418

Query: 394 SLNEKDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  E D   LD++AE LRLA  +L  ITG    + LL +IFS FCIGK
Sbjct: 419 AQLESDGPALDLLAEELRLAQNALNTITGEFTSDDLLGVIFSSFCIGK 466


>gi|229524906|ref|ZP_04414311.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae bv.
           albensis VL426]
 gi|229338487|gb|EEO03504.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae bv.
           albensis VL426]
          Length = 453

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYSPFTDEDGQQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 63  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E    ++I        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 302 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGESLGICHVNQPTLIRLSAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G++ L   +K  +     +      + +RHL  L +   +L +     E     +I+AE
Sbjct: 362 QGVDALRQHLKECMGFSGSQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|237654729|ref|YP_002891043.1| tRNA modification GTPase TrmE [Thauera sp. MZ1T]
 gi|237625976|gb|ACR02666.1| tRNA modification GTPase TrmE [Thauera sp. MZ1T]
          Length = 448

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 162/445 (36%), Positives = 245/445 (55%), Gaps = 16/445 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      I ++R+SG         +C +  P PR A    F     R +D+G+
Sbjct: 10  DTIAAIATAPGRGGIGVVRVSGAGLGAFALALCGRT-PQPRIAHFTRFLDEHERPIDEGI 68

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+ F +P SFTGED  E   HGG  V+  +LE   ++   RLA PGEF+RRAF NGK+DL
Sbjct: 69  LLYFAAPASFTGEDVLELQGHGGPVVMQMLLERCLQL-GARLAEPGEFTRRAFLNGKLDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE +ADLI + T    R ++  +SG+ S    + +D L  +R  +EA LDF EEE + 
Sbjct: 128 AQAEGVADLIEASTAAAARSAVRSLSGQFSEEVHRIVDALIDLRMLVEATLDFPEEE-ID 186

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                  +  +  ++  +   + + + G ++R+G  +V++G  N GKSSL N LA ++ A
Sbjct: 187 FLERARAMPRLESIREALEGVLDRARQGALLRSGLDVVLVGAPNVGKSSLLNQLAGEERA 246

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRD L   + +EG  + I DTAG+RET+D VE+ GI+RT+ E+  AD+IL L
Sbjct: 247 IVTDIAGTTRDALRETIQVEGIPLHIIDTAGLRETEDRVERIGIERTWREIARADVILHL 306

Query: 306 KEINSKKEI----SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELI 355
            E     E       P+ ++ I +  K DL        +        +S+ +GEG+ EL+
Sbjct: 307 VEAGVAAEGDLDERLPQGVERIMVANKIDLAGLPAGRVEAGGRVRLQVSARSGEGV-ELV 365

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
            +    ++         I + +RHL  L + +R++E A    +   L++ AE LRLA   
Sbjct: 366 RQELLRIAGWHAHGEDVILARERHLLALREALRHVEAA--GTQLGALELFAEELRLAQEE 423

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG ITG    + LL +IF++FCIGK
Sbjct: 424 LGTITGEFSADDLLGVIFARFCIGK 448


>gi|229520177|ref|ZP_04409604.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TM
           11079-80]
 gi|229342771|gb|EEO07762.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TM
           11079-80]
          Length = 453

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 63  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVSTDLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E    ++I        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 302 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G++ L   +K  +     +      + +RHL  L +   +L +     E     +I+AE
Sbjct: 362 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|104784446|ref|YP_610944.1| tRNA modification GTPase TrmE [Pseudomonas entomophila L48]
 gi|122401168|sp|Q1I2H5|MNME_PSEE4 RecName: Full=tRNA modification GTPase mnmE
 gi|95113433|emb|CAK18161.1| tRNA modification GTPase [Pseudomonas entomophila L48]
          Length = 456

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 256/462 (55%), Gaps = 28/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+RLSGP   Q  + I  +    PR A    F   DG +
Sbjct: 1   MNTVRETIAAIATAQGRGGVGIVRLSGPLASQAGQAITGRTLT-PRHAHYGPFRDADGLV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALFFPGPNSFTGEDVLELQGHGGPVVMDMLLQRCLQL-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       + L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSTQAARNALRSLQGAFSKRVHGLTEALIALRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  +++++S+   +   G ++R+G  +VI G  NAGKSSL N LA
Sbjct: 179 EE-IDFLADGHVLRMLDDVRSELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSLLNQLA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----FPKNID-------FIFIGTKSDLYSTYT--EEYD--HLIS 344
            +LL+ + ++  E S     +P+ +D          I  K+DL   +   E+ D  H+  
Sbjct: 298 RVLLVVD-STAPEASDPFALWPEFLDQRPDVAKVTLIRNKADLSGEHVGMEQSDDGHVTI 356

Query: 345 SFTGE----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEK 398
           + +      GL+ L + +K+ +  + +    S  + +RHL  L Q   +LE   A L   
Sbjct: 357 TLSAREDDMGLDLLRDHLKACMGYE-QTAESSFSARRRHLEALRQASAHLEHGRAQLTLA 415

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 416 GAG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|121596419|ref|YP_988315.1| tRNA modification GTPase TrmE [Acidovorax sp. JS42]
 gi|120608499|gb|ABM44239.1| tRNA modification GTPase trmE [Acidovorax sp. JS42]
          Length = 486

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 167/468 (35%), Positives = 246/468 (52%), Gaps = 31/468 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     + + +C +    PR+A+   F    G+ 
Sbjct: 22  LPRHSDPIVAIATAPGRGAVGIVRVSGKQIGALVQALCGRALK-PREATYLPFRDAAGQA 80

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAK--MPNLRLANPGEFSR 115
           +D+GL + FP+P S+TGED  E   HGG  V+  +L    E A+  +P LRLA PGEF+ 
Sbjct: 81  IDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQGLLPRLRLAEPGEFTE 140

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N KIDL +AE++ADLI + TE   R +   +SG+ S       D L H+R  +EA 
Sbjct: 141 RAFLNDKIDLAQAEAIADLIDASTEAAARGASRSLSGDFSREIHTLRDALVHLRMLVEAT 200

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +      +    +  LK  ++  + +   G ++R G K+VI G  NAGKSSL
Sbjct: 201 LDFPEEE-IDFLRKADASGQLSNLKRSLARVMQRASQGALLREGIKVVIAGQPNAGKSSL 259

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+RE+DD VE+ GI R + E
Sbjct: 260 LNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESDDEVERIGIARAWDE 319

Query: 296 VENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSDLYSTYT---- 336
           +  AD +L L ++       +               P  +  + +  K+D          
Sbjct: 320 IAGADAVLFLHDLTRWGSAQYQDDDAAIAHTLSNRLPAGVPVVDVWNKADAAPQAAAPAR 379

Query: 337 --EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMA 393
             E    L+S+ TG+GL+ L  ++  I   +       I +  RH+  L     +L E A
Sbjct: 380 EGESQAVLLSARTGQGLDTLRRQLLQIAGWQSAAEGVYI-ARARHIEALRAVDAHLMEAA 438

Query: 394 SLNEKDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  E D   LD++AE LRLA  +L  ITG    + LL +IFS FCIGK
Sbjct: 439 AQLESDGPALDLLAEELRLAQNALNTITGEFTSDDLLGVIFSSFCIGK 486


>gi|323493772|ref|ZP_08098890.1| tRNA modification GTPase TrmE [Vibrio brasiliensis LMG 20546]
 gi|323311906|gb|EGA65052.1| tRNA modification GTPase TrmE [Vibrio brasiliensis LMG 20546]
          Length = 453

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 248/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP   +V       K+  PR A    F   DG  LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPLASKVA-LEVTGKELRPRYAEYLPFTAEDGSQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  EF  HGG  V++ +++ + K+  +R A PGEFS RAF N K+DL
Sbjct: 63  ALFFPNPHSFTGEDVVEFQGHGGPVVMDMLIKRILKISGIRTARPGEFSERAFLNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + G  S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 AQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVAADLQTIIDNLAAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWEEISQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKS-----DLYSTYTEEYDHL-ISSFTG 348
                 +    K+I        P+NI    I  K+     DL   +  +   + +S+ TG
Sbjct: 302 VDGTTTDATDPKDIWPDFVDRLPENIGMTVIRNKADQTGEDLGICHVNDPTLIRLSAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G+E L   +K  +            + +RHL  L +   +LE+     E     +I+AE
Sbjct: 362 DGVEALRTHLKECMGFAGGN-EGGFMARRRHLEALERAAEHLEIGQQQLEGYMAGEILAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRITQQHLSEITGEFSSDDLLGRIFSSFCIGK 453


>gi|205422232|sp|Q12HM9|MNME_SHEDO RecName: Full=tRNA modification GTPase mnmE
          Length = 453

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 252/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +  K  P  R A    F   D R++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDLATNVAMAVLGKV-PKTRYADYCDFKDADDRVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMQVSGVRIAKPGEFSEQAFLNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S    + ++++T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVEQVTNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  +   + +     K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIANALYRIIAKLDTVQDSAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTLDTVEKIGIERAWAEIATADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEE-----YD-HLISSFTG 348
            +  +   +             P  +    +  K+DL     E+     +D + IS+ TG
Sbjct: 302 VDGTTTDAVDPHDIWPDFIDRLPTRLGVTVVRNKADLTGESLEKSQEQGFDVYRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++AE
Sbjct: 362 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAASHLQLGKEQLEVYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRMAQMALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|91795119|ref|YP_564770.1| tRNA modification GTPase TrmE [Shewanella denitrificans OS217]
 gi|91717121|gb|ABE57047.1| tRNA modification GTPase trmE [Shewanella denitrificans OS217]
          Length = 466

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 252/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +  K  P  R A    F   D R++D+G+
Sbjct: 17  DTIVAQATAPGRGGVGIIRISGDLATNVAMAVLGKV-PKTRYADYCDFKDADDRVIDQGI 75

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 76  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMQVSGVRIAKPGEFSEQAFLNDKLDL 135

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S    + ++++T++R ++EA +DF +EE V 
Sbjct: 136 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVEQVTNLRLYVEAAIDFPDEE-VD 194

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  +   + +     K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 195 FLSDGKIANALYRIIAKLDTVQDSAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 254

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VEK GI+R + E+  AD +L +
Sbjct: 255 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTLDTVEKIGIERAWAEIATADRVLFM 314

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEE-----YD-HLISSFTG 348
            +  +   +             P  +    +  K+DL     E+     +D + IS+ TG
Sbjct: 315 VDGTTTDAVDPHDIWPDFIDRLPTRLGVTVVRNKADLTGESLEKSQEQGFDVYRISAKTG 374

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++AE
Sbjct: 375 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAASHLQLGKEQLEVYLAGELLAE 433

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 434 ELRMAQMALSEITGKFTSDDLLGKIFSSFCIGK 466


>gi|84684647|ref|ZP_01012548.1| tRNA modification GTPase [Maritimibacter alkaliphilus HTCC2654]
 gi|84667626|gb|EAQ14095.1| tRNA modification GTPase [Rhodobacterales bacterium HTCC2654]
          Length = 423

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 170/437 (38%), Positives = 252/437 (57%), Gaps = 17/437 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    + +++IR+SGP  F   E +     P  R   LR     +  I D+ L
Sbjct: 2   DTIFALASARGKAGVAVIRVSGPDAFSAGEVLAGALPP-ARTTGLRTLRNGNDPI-DEAL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F    SFTGE   EFH+HG  AVV+ +L  L+ +P LR+A PGEF+RRA EN ++DL
Sbjct: 60  VLSFSEGASFTGEPVVEFHLHGSTAVVSSVLSTLSSVPGLRMAEPGEFTRRAMENERLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI SETE QR+ ++  +SG L     QW   L    + +EA +DF++EE V 
Sbjct: 120 AQVEGLADLIDSETEAQRKQALRVLSGALGDKTSQWRKDLVRATALLEATIDFADEE-VP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EVL+ +      + +  +  ++ E IR+G+++ I+G  NAGKS+L NALA +D A
Sbjct: 179 VDVSPEVLDLVDRTLAGVRTETAGARISERIRDGFEVAIVGAPNAGKSTLLNALAGRDAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +++ GTTRDVL + +DL G  V I DTAG+RE++D++E+ GI+R      +ADL + L
Sbjct: 239 ITSEVAGTTRDVLEVRMDLAGLPVTILDTAGLRESEDVIERLGIERAKARAADADLRIFL 298

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
             ++ +     P + D +  G KSDL  T        IS  TGEGL+ L+ +I S+LS +
Sbjct: 299 --LSGEVLPMDPMDGDIVVQG-KSDLTGTG-------ISGKTGEGLDFLVEQITSVLSER 348

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCV 423
                 +I   +RH   LS     LE A +  +      ++ AE L  A  +L  + G V
Sbjct: 349 ASHAGTAI--RERHRVALSMAQVALENARIEVQSGSERSELAAEELWSAIRALDALMGRV 406

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE +LD IF+ FC+GK
Sbjct: 407 DVEVVLDEIFASFCLGK 423


>gi|307305834|ref|ZP_07585580.1| tRNA modification GTPase TrmE [Shewanella baltica BA175]
 gi|306911327|gb|EFN41753.1| tRNA modification GTPase TrmE [Shewanella baltica BA175]
          Length = 458

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 253/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P  R A    F    G+++D+G+
Sbjct: 9   DTIVAQATAPGRGGVGIIRISGDKASDVAMAVLGHL-PKTRYADYCDFKSASGQVIDQGI 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 68  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKLDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S    + +D++T++R ++EA +DF +EE V 
Sbjct: 128 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 186

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  + + +    +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 187 FLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 246

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L +
Sbjct: 247 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 306

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348
            +  +  ++             P N+    I  K+DL       TEE     + IS+ TG
Sbjct: 307 VDGTTTADVDPHTIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAKTG 366

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++AE
Sbjct: 367 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELLAE 425

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 426 ELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 458


>gi|15893098|ref|NP_360812.1| tRNA modification GTPase TrmE [Rickettsia conorii str. Malish 7]
 gi|21363014|sp|Q92GE8|MNME_RICCN RecName: Full=tRNA modification GTPase mnmE
 gi|15620303|gb|AAL03713.1| possible thiophene and furan oxidation protein thdF [Rickettsia
           conorii str. Malish 7]
          Length = 445

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/456 (35%), Positives = 255/456 (55%), Gaps = 33/456 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD----GRIL 61
           ETIFA S+    + +++ R+SGP   +V + +  +K     K+ L Y+  +       ++
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELI 58

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  +++ F SP SFTGED  E H HG  A+   +   L  +  +RLA  GEF++RAF N 
Sbjct: 59  DNVMVVYFKSPGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNN 118

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K DL  AE +ADLI++ET MQ + ++   SG+L +LY  W  +L  + S +EA +DF  +
Sbjct: 119 KFDLTAAEGIADLINAETIMQHKQAIRQASGKLEALYNNWRSQLLKMLSLLEAYIDFP-D 177

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+ +    EV N    L N IS +++  + GE++R+G K+ I+G  N GKSSL N L +
Sbjct: 178 EDIPDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQ 237

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300
           +D+AIV++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + AD
Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTAD 297

Query: 301 LILLL-------KEIN-------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           + +++         IN        +  I+    ID I     S ++S   +     +S  
Sbjct: 298 IKIIMFDAEKLDSSINEDIINLIDENTITIINKIDLI---EASKIFSIENKYKCLRVSVK 354

Query: 347 TGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
               L  ++  I++I  N   F + P+   +++RH  +L Q + +L   SL   D  L +
Sbjct: 355 NNIALSSILKNIENIAENMAGFTETPY--ITNQRHRNYLQQALSHLTAFSL---DNDLVL 409

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E++R+ +  +G ITG ++VE++L  IF  FCIGK
Sbjct: 410 ATEDIRMTARCIGAITGVINVEEILGEIFKNFCIGK 445


>gi|260595826|ref|YP_003208397.1| tRNA modification GTPase TrmE [Cronobacter turicensis z3032]
 gi|260215003|emb|CBA26661.1| tRNA modification GTPase mnmE [Cronobacter turicensis z3032]
          Length = 454

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 167/463 (36%), Positives = 258/463 (55%), Gaps = 32/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P  R A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD 178

Query: 181 EEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           EE +   S  ++   LN+++    D+ +  ++ + G ++R G K+VI G  NAGKSSL N
Sbjct: 179 EE-IDFLSDGKIEAQLNEVI---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLN 234

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           ALA ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E
Sbjct: 235 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 294

Query: 298 NADLILLLKEINSKKEISFPKNI--DFI----------FIGTKSDLYSTY---TEEYDH- 341
            AD +L + +  +  + + P  I  DFI           +  K+D+   +   +E   H 
Sbjct: 295 QADRVLFMVD-GTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEHPGLSEVNGHS 353

Query: 342 --LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNE 397
              +S+ T +G++ L + +K  +      +     + +RHL  L     +L+   A L  
Sbjct: 354 LIRLSARTSDGVDVLRSHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLG 412

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              G +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 413 AWAG-ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|91204852|ref|YP_537207.1| tRNA modification GTPase TrmE [Rickettsia bellii RML369-C]
 gi|122426138|sp|Q1RKJ6|MNME_RICBR RecName: Full=tRNA modification GTPase mnmE
 gi|91068396|gb|ABE04118.1| tRNA modification GTPase TrmE [Rickettsia bellii RML369-C]
          Length = 445

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 163/453 (35%), Positives = 254/453 (56%), Gaps = 27/453 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61
           ETIFA S+    + +++ R+SG    +V + +  K    PR     Y+  L       ++
Sbjct: 2   ETIFAQSSSFGKAGVAVFRVSGTKSLEVLKLLTGKSNFKPR---FMYYQKLTSPESNDLI 58

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  +++ F +P SFTGED  E H HG  A+   +   L  +P +RLA  GEF++RAF N 
Sbjct: 59  DNAMVVYFKAPNSFTGEDVVEIHTHGSKAISIMLTNALLNIPGVRLAEAGEFTKRAFLNN 118

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K DL  AE +ADLI++ET MQ + ++    G L  LY  W  +L  I S +EA +DF  +
Sbjct: 119 KFDLTAAEGIADLINAETIMQHKQAIRQAGGALEELYNSWRSQLLRIISLLEAYIDFP-D 177

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+     K+V N    L N IS +++  + GE++R+G K+ I+G  NAGKSSL N L +
Sbjct: 178 EDIPESVLKDVTNTHKTLINTISEYLNDNRKGELLRSGLKLAIIGPPNAGKSSLLNFLMR 237

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300
           +D+AIV++I GTTRD++   LD+ GY + + DTAGIR E++D++E+EGIKR     + AD
Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRGESNDVIEQEGIKRAIDSAKKAD 297

Query: 301 LILLLKEINS-----KKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFTGE- 349
           + +++ +  +      ++I+   + + I I  K DL           +Y  L  S     
Sbjct: 298 IKIVMFDAETLDSAVNEDITGLIDENTIVIINKIDLIPENRIFNIENKYRCLKVSIKNNI 357

Query: 350 GLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
            L  ++  I+ I  N   F + P+   +++RH +HL Q + YL+  +L   D  L +  E
Sbjct: 358 ALPSILKNIEEIAENMAGFTETPYI--TNERHRHHLKQALVYLKDFNL---DNDLVLATE 412

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++R+    +G ITG +DVE++L  IF  FCIGK
Sbjct: 413 DIRMTMRRIGAITGIIDVEEILGEIFKNFCIGK 445


>gi|153002874|ref|YP_001368555.1| tRNA modification GTPase TrmE [Shewanella baltica OS185]
 gi|166234820|sp|A6WUK3|MNME_SHEB8 RecName: Full=tRNA modification GTPase mnmE
 gi|151367492|gb|ABS10492.1| tRNA modification GTPase TrmE [Shewanella baltica OS185]
          Length = 453

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 252/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P  R A    F    G+++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDKASDVAMAVLGHL-PKTRYADYCDFKSASGQVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S    + +D++T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  + + +    +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348
            +  +   +             P N+    I  K+DL       TEE     + IS+ TG
Sbjct: 302 VDGTTTAAVDPHTIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++AE
Sbjct: 362 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|330961500|gb|EGH61760.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 456

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 166/461 (36%), Positives = 249/461 (54%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  + +  +  P PR A    F    G +
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKTAQAMIGRT-PKPRYAHYGPFSDDAGEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLTMLDDVRLELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R T+D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRNTEDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  KSDL       +T +  H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKSDLSGDHVGLFTSDDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASHSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  SLG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|34581226|ref|ZP_00142706.1| possible thiophene and furan oxidation protein thdF [Rickettsia
           sibirica 246]
 gi|229587120|ref|YP_002845621.1| tRNA modification GTPase TrmE [Rickettsia africae ESF-5]
 gi|28262611|gb|EAA26115.1| possible thiophene and furan oxidation protein thdF [Rickettsia
           sibirica 246]
 gi|228022170|gb|ACP53878.1| tRNA modification GTPase TrmE [Rickettsia africae ESF-5]
          Length = 445

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/456 (35%), Positives = 255/456 (55%), Gaps = 33/456 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD----GRIL 61
           ETIFA S+    + +++ R+SGP   +V + +  +K     K+ L Y+  +       ++
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELI 58

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  +++ F SP SFTGED  E H HG  A+   +   L  +  +RLA  GEF++RAF N 
Sbjct: 59  DNVMVVYFKSPGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNN 118

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K DL  AE +ADLI++ET MQ + ++   SG+L +LY  W  +L  + S +EA +DF  +
Sbjct: 119 KFDLTAAEGIADLINAETIMQHKQAIRQASGKLEALYNNWRSQLLKMISLLEAYIDFP-D 177

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+ +    EV N    L N IS +++  + GE++R+G K+ I+G  N GKSSL N L +
Sbjct: 178 EDIPDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQ 237

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300
           +D+AIV++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + AD
Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTAD 297

Query: 301 LILLL-------KEIN-------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           + +++         IN        +  I+    ID I     S ++S   +     +S  
Sbjct: 298 IKIIMFDAEKLDSSINEDIINLIDENTITIINKIDLI---EASKIFSIENKYKCLRVSVK 354

Query: 347 TGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
               L  ++  I++I  N   F + P+   +++RH  +L Q + +L   SL   D  L +
Sbjct: 355 NNIALSSILKNIENIAENMAGFTETPY--ITNQRHRNYLQQALSHLTAFSL---DNDLVL 409

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E++R+ +  +G ITG ++VE++L  IF  FCIGK
Sbjct: 410 ATEDIRMTARCIGAITGVINVEEILGEIFKNFCIGK 445


>gi|217975462|ref|YP_002360213.1| tRNA modification GTPase TrmE [Shewanella baltica OS223]
 gi|217500597|gb|ACK48790.1| tRNA modification GTPase TrmE [Shewanella baltica OS223]
          Length = 453

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 252/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P  R A    F    G+++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDKASDVAMAVLGHL-PKTRYADYCDFKSASGQVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S    + +D++T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  + + +    +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348
            +  +   +             P N+    I  K+DL       TEE     + IS+ TG
Sbjct: 302 VDGTTTAAVDPHAIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++AE
Sbjct: 362 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|153821980|ref|ZP_01974647.1| tRNA modification GTPase TrmE [Vibrio cholerae B33]
 gi|229508290|ref|ZP_04397794.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae BX
           330286]
 gi|229508871|ref|ZP_04398362.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae B33]
 gi|229517142|ref|ZP_04406588.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae RC9]
 gi|229606564|ref|YP_002877212.1| tRNA modification GTPase TrmE [Vibrio cholerae MJ-1236]
 gi|255746813|ref|ZP_05420759.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholera CIRS
           101]
 gi|262155893|ref|ZP_06029015.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
           INDRE 91/1]
 gi|31340537|sp|Q9KVY5|MNME_VIBCH RecName: Full=tRNA modification GTPase mnmE
 gi|126520519|gb|EAZ77742.1| tRNA modification GTPase TrmE [Vibrio cholerae B33]
 gi|229346205|gb|EEO11177.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae RC9]
 gi|229354146|gb|EEO19078.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae B33]
 gi|229354563|gb|EEO19485.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae BX
           330286]
 gi|229369219|gb|ACQ59642.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
           MJ-1236]
 gi|255735570|gb|EET90969.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholera CIRS
           101]
 gi|262030345|gb|EEY48987.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
           INDRE 91/1]
          Length = 453

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 63  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E    ++I        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 302 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G++ L   +K  +     +      + +RHL  L +   +L +     E     +I+AE
Sbjct: 362 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|229530209|ref|ZP_04419598.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
           12129(1)]
 gi|229332342|gb|EEN97829.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
           12129(1)]
          Length = 453

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 63  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E    ++I        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 302 VDGTTTEATDPQDIWPDFFDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G++ L   +K  +     +      + +RHL  L +   +L +     E     +I+AE
Sbjct: 362 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|15640035|ref|NP_062587.1| tRNA modification GTPase TrmE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|153827657|ref|ZP_01980324.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MZO-2]
 gi|227080240|ref|YP_002808791.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae M66-2]
 gi|254851569|ref|ZP_05240919.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MO10]
 gi|298501189|ref|ZP_07010988.1| tRNA modification GTPase TrmE [Vibrio cholerae MAK 757]
 gi|9654394|gb|AAF93181.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|149737870|gb|EDM52775.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MZO-2]
 gi|227008128|gb|ACP04340.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae M66-2]
 gi|254847274|gb|EET25688.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MO10]
 gi|297540061|gb|EFH76123.1| tRNA modification GTPase TrmE [Vibrio cholerae MAK 757]
          Length = 464

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+G+
Sbjct: 15  DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 73

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 74  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 133

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 134 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 192

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 193 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 252

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 253 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 312

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E    ++I        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 313 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 372

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G++ L   +K  +     +      + +RHL  L +   +L +     E     +I+AE
Sbjct: 373 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 431

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 432 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464


>gi|294010016|ref|YP_003543476.1| tRNA modification GTPase [Sphingobium japonicum UT26S]
 gi|292673346|dbj|BAI94864.1| tRNA modification GTPase [Sphingobium japonicum UT26S]
          Length = 427

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 157/442 (35%), Positives = 239/442 (54%), Gaps = 24/442 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK--ASLRYFFGLDGRILDK 63
           ETIFA+S+GA P+ I+++R+SGP   Q    +     P  R   +SLR     DG +LD+
Sbjct: 3   ETIFALSSGAPPAGIAVVRISGPGAGQALLALAGSLPPARRARLSSLRDPR--DGALLDR 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L++ FP P++ TGED AE H HGG AV+  + + LA +  LR A  GEF+RRAF NG++
Sbjct: 61  ALVLWFPGPDTATGEDLAELHCHGGRAVIAAVEQALASLQGLRRAEAGEFTRRAFANGRM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL   E L+DL+++ET+ QRR ++    G  S    QW+  L  + +  EA LDFS+E+D
Sbjct: 121 DLNAVEGLSDLLAAETQQQRRAALLMAEGHFSQRVEQWLRTLLDLSAMTEAALDFSDEDD 180

Query: 184 VQNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           V +      +   +  L  D+ + ++     E +R+G ++V+ G  NAGKS+L N L  +
Sbjct: 181 VPDHGIETRIGQGVRILAEDVRAVLASPS-AERLRDGVRVVLAGPPNAGKSTLLNRLVGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADL 301
           D AIV+D+ GTTRD + +   L G     +DTAG+R ET D +E  GI R    +E AD+
Sbjct: 240 DAAIVSDVAGTTRDRIEVPAALGGTAFLFTDTAGLRGETGDAIEAIGIDRARGALEAADI 299

Query: 302 ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
           IL L   +       P+  D I I  + D ++   +     +S+ TGEG++ L + +   
Sbjct: 300 ILWLGPADEA-----PRE-DAIVIAAQCDRHA-KADRPGLPLSAVTGEGMDRLASML--- 349

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQ---TVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
                ++    +P    +  H  Q     R     +  +    L I+AE LR A  ++  
Sbjct: 350 ----LERAAMLLPGEGDYALHQRQREGAARLHAHLTSAQGSDDLLIVAEELRQARHAIDL 405

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           +TG    E +LD +F+ FCIGK
Sbjct: 406 LTGRAGTEDMLDRLFAGFCIGK 427


>gi|262172771|ref|ZP_06040449.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus
           MB-451]
 gi|261893847|gb|EEY39833.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus
           MB-451]
          Length = 453

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 250/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   +G+ LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDENGQQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 63  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E    +EI        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 302 VDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G++ L   +K  +     +      + +RHL  L +   +L++     E     +I+AE
Sbjct: 362 QGVDALRQHLKECMGFAGNQ-EGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEILAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|304313413|ref|YP_003813011.1| tRNA modification GTPase [gamma proteobacterium HdN1]
 gi|301799146|emb|CBL47389.1| tRNA modification GTPase [gamma proteobacterium HdN1]
          Length = 464

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 166/459 (36%), Positives = 246/459 (53%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKG 64
           +TI A +T      + I+RLSGP    +   IC +      R A    FF   G +LD G
Sbjct: 9   DTIAAQATPPGRGGVGIVRLSGPEALSIGLAICLRSGVLQARHAYFSEFFDAAGNVLDHG 68

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LL+ FPSP SFTGED  E   HGG  V++ +++    +   RLA PGEFS RAF N K+D
Sbjct: 69  LLLYFPSPHSFTGEDVIELQAHGGPFVISQLMDRAITL-GARLARPGEFSERAFHNDKLD 127

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI S +E   R ++  + G  S    +++++L  +R F+EA +DF EEE +
Sbjct: 128 LAQAEAIADLIDSGSEQAARSAIRSLQGAFSIKINEFLNELIRLRVFVEAAIDFPEEE-I 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              S   V + +  L   + +  S+ K G +++ G ++V+ G  NAGKSSL N LA  D 
Sbjct: 187 DFLSDGRVQDQLNKLLAHLDAIFSEAKRGVLLKEGMRVVLAGKPNAGKSSLLNQLAGTDR 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT I GTTRDVL   + L+G  + ISDTAG+RE+ D VE+EGI+R + E+E AD ILL
Sbjct: 247 AIVTPIAGTTRDVLHEHIHLDGMPLHISDTAGLRESADEVEQEGIRRAWQEIERADRILL 306

Query: 305 LKEINSKKEIS----FPKNID------------FIFIGTKSDLYSTYTEEYDH------L 342
           L + +   ++     +P+ I+               +  K DL      + +H       
Sbjct: 307 LTDASEHLDLHPAKFWPEFINTLHERAPSAMNRMTIVRNKIDLADEAAGQSEHDNIPTIR 366

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           + + +G+G++ L   +K I+  + +    +  + +RHL  L     +L          G 
Sbjct: 367 LCARSGQGVDLLREHLKQIMGYE-EPAETTFSARQRHLLALETAREFLVTGQQQLLSHGA 425

Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LR A   L  ITG    + LL  IFS FCIGK
Sbjct: 426 GELLAEDLRAAQEQLSTITGQFTSDDLLGEIFSSFCIGK 464


>gi|227328550|ref|ZP_03832574.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 454

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 248/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +   V   +  K  P PR A    F   +G  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRISGQAAADVAHTVLGKL-PKPRHADYLPFRDANGTTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  + N+R+A PGEFS RAF N K+DL
Sbjct: 64  ALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLSNVRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+ +  ++   G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEAQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFM 302

Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTG 348
                      ++I  +     PK +    +  K+D+        D   H    +S+ TG
Sbjct: 303 VDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGEALGIEDVNTHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L + +K  +            + +RHL  L    ++L      L     G +++A
Sbjct: 363 EGIDTLRDHLKQSMGFT-SNTEGGFLARRRHLQALELAAQHLIQGKEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|83594953|ref|YP_428705.1| tRNA modification GTPase TrmE [Rhodospirillum rubrum ATCC 11170]
 gi|123525454|sp|Q2RN77|MNME_RHORT RecName: Full=tRNA modification GTPase mnmE
 gi|83577867|gb|ABC24418.1| tRNA modification GTPase trmE [Rhodospirillum rubrum ATCC 11170]
          Length = 455

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 163/456 (35%), Positives = 242/456 (53%), Gaps = 25/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK------------KKPFPRKASLRYF 53
           +TIFA +T    + ++I+RLSGP        +  +            + P          
Sbjct: 4   DTIFAPATARGRAGVAIVRLSGPRAATALTLLAGRLPEARRATRAALRSPPSGPGPTGPG 63

Query: 54  FGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
               G +LD  L++ FP+P SFTGED AE H+HGG AV+  +L  L  +P LR A  GEF
Sbjct: 64  PEEGGEVLDDALVLWFPAPASFTGEDVAELHIHGGRAVLAAVLGALGDLPGLRPAEAGEF 123

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           SRRAF NG++DL  AE+LADL+ +ET+ QRR ++    G L  LY  W      + + +E
Sbjct: 124 SRRAFLNGRLDLTAAEALADLVDAETQAQRRQALRQADGALVRLYEGWRKTGIGLLAHLE 183

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF  +ED+       V   I  L + ++ H+     GE +R+G ++ ++G  N GKS
Sbjct: 184 AVLDFP-DEDLPPEVETAVRGGIGALADALAGHLDDRHRGERLRDGLQVAVVGAPNVGKS 242

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N LA+++ AIV+DI GTTRD++ + LDL GY + ++DTAG+RET D +E EG++R  
Sbjct: 243 SLVNRLARREAAIVSDIAGTTRDIVEVALDLGGYPLVVADTAGLRETSDGIEAEGVRRAR 302

Query: 294 LEVENADLILLLKEINSKKEISFPK----NIDFIFIGTKSDLYSTYTEEY-----DHLIS 344
             +  ADL L + +   +     P         + + TK DL      E         +S
Sbjct: 303 ARLAAADLTLAVSDGTVENGADDPAADLTGEAVLRVVTKRDLLDPRAVERWLARGALPVS 362

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           + TGEGL+ L   ++S     F+      P+  R   H S  +          +    ++
Sbjct: 363 TLTGEGLDALEAALESRARAFFEG--DGTPALTRQ-RHRSALMEARAALRRAAEAPLAEL 419

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE+LRLA  ++G+ITG V V+ +LD+IF  FCIGK
Sbjct: 420 VAEDLRLALRAIGRITGRVTVDDVLDVIFRDFCIGK 455


>gi|227113121|ref|ZP_03826777.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 454

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 249/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +   V   +  K  P PR A    F   +G  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRISGQAAADVAHAVLGKL-PKPRHADYLPFRDANGTTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +  +R+A PGEFS RAF N K+DL
Sbjct: 64  ALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLSTVRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+ +  ++   G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEAQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFM 302

Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLY--STYTEEYDH----LISSFTG 348
                      ++I  +     PK +    +  K+D+   +   EE +      +S+ TG
Sbjct: 303 VDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGIEEVNTHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L + +K  +            + +RHL  L    ++L      L     G +++A
Sbjct: 363 EGIDTLRDHLKQSMGFT-SNTEGGFLARRRHLQALELAAQHLIQGKEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|325199077|gb|ADY94533.1| tRNA modification GTPase TrmE [Neisseria meningitidis G2136]
          Length = 427

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/435 (37%), Positives = 245/435 (56%), Gaps = 24/435 (5%)

Query: 22  IIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSA 81
           +IR+SG +   + E +C K  P PR A+   F   DG+ +D GLL+ F +P SFTGED  
Sbjct: 1   MIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQAIDSGLLLFFAAPASFTGEDVI 59

Query: 82  EFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141
           E   HGG  V++ +L    ++   RLA PGEF++RAF N K+DL +AE +ADLI + +  
Sbjct: 60  ELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLNDKLDLAQAEGVADLIDASSRS 118

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
             RL++  + G+ S      ++ L  +R  +EA LDF EE D+    + +    +  L+ 
Sbjct: 119 AARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPEE-DIDFLEAADARGKLDGLRR 177

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +   ++  + G I+R G  +V++G  N GKSSL NALA  +VAIVTDI GTTRD +   
Sbjct: 178 AVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGTTRDAVRER 237

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEI--- 314
           + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD+ L+L +    +N K      
Sbjct: 238 ILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGVNDKTRAILD 297

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKIKSILSNKFKK 368
           + P  +  I I +KSDL++     +         +S+ TG+GL+ L   +      + + 
Sbjct: 298 ALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKTGDGLDALKRTLLREAGWQGEG 357

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDIIAENLRLASVSLGKITGCVDV 425
               + +  RH+  L      L +A+L    CG   +++ AE+LRLA V+ G+ITG    
Sbjct: 358 EGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIELFAEHLRLAQVACGEITGEFTA 412

Query: 426 EQLLDIIFSKFCIGK 440
           + LL +IFS+FCIGK
Sbjct: 413 DDLLGVIFSRFCIGK 427


>gi|157826422|ref|YP_001495486.1| tRNA modification GTPase TrmE [Rickettsia bellii OSU 85-389]
 gi|166234815|sp|A8GUF3|MNME_RICB8 RecName: Full=tRNA modification GTPase mnmE
 gi|157801726|gb|ABV78449.1| tRNA modification GTPase TrmE [Rickettsia bellii OSU 85-389]
          Length = 445

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 163/453 (35%), Positives = 254/453 (56%), Gaps = 27/453 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61
           ETIFA S+    + +++ R+SG    +V + +  K    PR     Y+  L       ++
Sbjct: 2   ETIFAQSSSFGKAGVAVFRVSGTKSLEVLKLLTGKSNFKPR---FMYYQKLTSPESNDLI 58

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  +++ F +P SFTGED  E H HG  A+   +   L  +P +RLA  GEF++RAF N 
Sbjct: 59  DNAMVVYFKAPNSFTGEDVVEIHTHGSKAISIMLTNALLNIPGVRLAEAGEFTKRAFLNN 118

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K DL  AE +ADLI++ET MQ + ++    G L  LY  W  +L  I S +EA +DF  +
Sbjct: 119 KFDLTAAEGIADLINAETIMQHKQAIRQAGGALEELYNSWRSQLLRIISLLEAYIDFP-D 177

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+     K+V N    L N IS +++  + GE++R+G K+ I+G  NAGKSSL N L +
Sbjct: 178 EDIPESVLKDVTNTHKTLINTISEYLNDNRKGELLRSGLKLAIIGPPNAGKSSLLNFLMR 237

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300
           +D+AIV++I GTTRD++   LD+ GY + + DTAGIR E++D++E+EGIKR     + AD
Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRGESNDVIEQEGIKRAIDSAKKAD 297

Query: 301 LILLLKEINS-----KKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFTGE- 349
           + +++ +  +      ++I+   + + I I  K DL           +Y  L  S     
Sbjct: 298 IKIVMFDAETLDSAVNEDITGLIDENTIVIINKIDLIPENRIFNIENKYRCLKVSIKNNI 357

Query: 350 GLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
            L  ++  I+ I  N   F + P+   +++RH +HL Q + YL+  +L   D  L +  E
Sbjct: 358 ALPSILKNIEEIAENMAGFTETPYI--TNERHRHHLKQALVYLKDFNL---DNDLVLATE 412

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++R+    +G ITG +DVE++L  IF  FCIGK
Sbjct: 413 DIRMTMHRIGAITGIIDVEEILGEIFKNFCIGK 445


>gi|307215187|gb|EFN89959.1| tRNA modification GTPase GTPBP3, mitochondrial [Harpegnathos
           saltator]
          Length = 435

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 167/432 (38%), Positives = 244/432 (56%), Gaps = 41/432 (9%)

Query: 45  PRKASLRYFFGLD-GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP 103
           PRKA LR     + G ++D GL + FP P SFTGEDS EFHVHGG A+++ +++ L+K+ 
Sbjct: 9   PRKAFLRKIRDPETGEVIDHGLCLWFPGPHSFTGEDSVEFHVHGGPAILSRLMQTLSKL- 67

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
            +  A PGEF+RRAF N K+DL E E LADLI +ETE QR+ ++    G L  LY  W  
Sbjct: 68  QVYPAQPGEFTRRAFYNNKLDLTEVEGLADLIEAETECQRKQALLQADGLLRKLYDNWRK 127

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
            L+   + IEA +DF E++++++   +     +  L +D+  H++ G+ GEI+RNG + V
Sbjct: 128 VLSEGVASIEAYIDFGEDDNIESDVVERTHGTLKKLISDMEEHLADGRKGEILRNGVRTV 187

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDD 282
           I+G  N GKSSL N L +++  IVT I GTTRDV+ +  ++ GY V I+DTAGI + TDD
Sbjct: 188 IVGEPNVGKSSLLNHLVQRNAVIVTPIAGTTRDVIELSANISGYPVLIADTAGITDHTDD 247

Query: 283 IVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFPKNID------------------- 321
           IVE EG++R    V NAD ++++ + +  +   +++   +                    
Sbjct: 248 IVEAEGVRRARKHVVNADFVVVVMDASKVAASNVTYDDYVHEYLSSLGIHELLTKMGKQR 307

Query: 322 FIFIGTKSDLYSTYTEEY-----DHLISSFTGEGLEELI----NKIKSILSNKFKKLPFS 372
           F+ I  K DL S   E         LIS  T  G  +L+    ++ ++I  N   + P  
Sbjct: 308 FVVIMNKRDLLSEEDERRLSDTEGVLISCKTESGFRDLLRSLTDRFRNICGNPSAESP-- 365

Query: 373 IPSHKRHLYHLSQTVR----YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428
             S  RH  HL+Q +R    YLE+ +    D    I AE +  A   LG+ITG V  +++
Sbjct: 366 TISQARHRNHLTQCLRHLQNYLELCTNERHDVA--IAAEEIHKAMRELGRITGHVSTDEI 423

Query: 429 LDIIFSKFCIGK 440
           LDIIF  FCIGK
Sbjct: 424 LDIIFKNFCIGK 435


>gi|238765479|ref|ZP_04626398.1| tRNA modification GTPase mnmE [Yersinia kristensenii ATCC 33638]
 gi|238696303|gb|EEP89101.1| tRNA modification GTPase mnmE [Yersinia kristensenii ATCC 33638]
          Length = 454

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 248/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +   V E +  K  P PR A    F   DG  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAAAAVAEAVLGKL-PKPRYADYLPFKDADGSTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 64  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S    + ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHKLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE +D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWHEIEQADRVLFM 302

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348
            +  + +               P  +    +  K+D+       TE   H    +S+ TG
Sbjct: 303 VDGTTTEATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L N +K  +            + +RHL  L    ++L      L     G +++A
Sbjct: 363 EGIDLLRNHLKQSMGFT-SNTEGGFLARRRHLQALETAAQHLVQGHEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|121730054|ref|ZP_01682463.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V52]
 gi|147673066|ref|YP_001218408.1| tRNA modification GTPase TrmE [Vibrio cholerae O395]
 gi|254291135|ref|ZP_04961932.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae
           AM-19226]
 gi|121628203|gb|EAX60726.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V52]
 gi|146314949|gb|ABQ19488.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O395]
 gi|150422980|gb|EDN14930.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae
           AM-19226]
 gi|227011994|gb|ACP08204.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O395]
          Length = 464

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+G+
Sbjct: 15  DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 73

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 74  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 133

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 134 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 192

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 193 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 252

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 253 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 312

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E    ++I        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 313 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 372

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G++ L   +K  +     +      + +RHL  L +   +L +     E     +I+AE
Sbjct: 373 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 431

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 432 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464


>gi|332531204|ref|ZP_08407117.1| tRNA modification GTPase TrmE [Hylemonella gracilis ATCC 19624]
 gi|332039311|gb|EGI75724.1| tRNA modification GTPase TrmE [Hylemonella gracilis ATCC 19624]
          Length = 452

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 162/460 (35%), Positives = 245/460 (53%), Gaps = 29/460 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    E I A++T     A+ I+R SG     +   +C K    PR A+        G  
Sbjct: 2   LARHHEPIVAIATAPGRGAVGIVRASGRDLTTLVHAVCGKAL-MPRHATYLPLRDARGEA 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE-LAKMPNLRLANPGEFSRRAFE 119
           +D GL I FP+P S+TGE+  E  VHGG  V+  +L   L  +P  R+A PGEF++RAF 
Sbjct: 61  IDHGLAIHFPAPHSYTGEEVLELQVHGGPVVLQLLLARCLEALPGSRIALPGEFTQRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI + TE   R +   + G  S    Q  + L H+R  +EA LDF 
Sbjct: 121 NGKLDLAQAEAVADLIDASTEAAARSAGRSLEGAFSREIAQLREALVHLRMLVEATLDFP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE D+      +    +  L+  +   + Q + G ++R G K+VI G  NAGKSSL NAL
Sbjct: 181 EE-DIDFLRQADAQGQLSRLQVQLQVILRQAQQGSLLREGIKVVIAGQPNAGKSSLLNAL 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A  ++AIVT I GTTRDV+   + +EG  + + DTAG+RE+ D VE+ GI+R + ++ +A
Sbjct: 240 AGAELAIVTPIAGTTRDVVQQTIQIEGVPLHVVDTAGLRESQDEVERIGIERAWAQIASA 299

Query: 300 DLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           D +L L ++  + +  +           P ++  I I  K D            +S+ TG
Sbjct: 300 DAVLFLHDLTRQIQADYLASDEALAQRLPSDVPVIHIWNKHDQAPEAVNRPGISLSAKTG 359

Query: 349 EGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGLD---- 403
            GL+ L   +  + +  ++  P  +  + +RH+  L    R+L+ A     +C LD    
Sbjct: 360 AGLDLLRQAL--LRTVGWQSAPEGLFLARERHVQALRSVSRHLQAA-----ECHLDEKAL 412

Query: 404 ---IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              ++AE LRLA  +L +ITG    + LL +IFS+FCIGK
Sbjct: 413 ALDLLAEELRLAQNALNEITGEFTSDDLLGVIFSRFCIGK 452


>gi|258622951|ref|ZP_05717966.1| tRNA modification GTPase [Vibrio mimicus VM573]
 gi|258584734|gb|EEW09468.1| tRNA modification GTPase [Vibrio mimicus VM573]
          Length = 464

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 250/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   +G+ LD+G+
Sbjct: 15  DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDENGQQLDQGI 73

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 74  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDL 133

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 134 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 192

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 193 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 252

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 253 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 312

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E    +EI        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 313 VDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 372

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G++ L   +K  +     +      + +RHL  L +   +L++     E     +I+AE
Sbjct: 373 QGVDALRQHLKECMGFAGNQ-EGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEILAE 431

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 432 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464


>gi|167036429|ref|YP_001671660.1| tRNA modification GTPase TrmE [Pseudomonas putida GB-1]
 gi|189036205|sp|B0KRC0|MNME_PSEPG RecName: Full=tRNA modification GTPase mnmE
 gi|166862917|gb|ABZ01325.1| tRNA modification GTPase TrmE [Pseudomonas putida GB-1]
          Length = 456

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 168/463 (36%), Positives = 259/463 (55%), Gaps = 30/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+RLSGP   +  + I  +    PR A    F   DG +
Sbjct: 1   MNTVRETIAAIATAQGRGGVGIVRLSGPLAGKAGQLITGRTLT-PRHAHYGPFRDDDGLV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQV-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + GE S       + L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSKRVHSLTEALIALRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL+ +  ++ ++S+   +   G ++R+G  +VI G  NAGKSSL N LA
Sbjct: 179 EE-IDFLADGHVLSMLDAVRGELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSLLNQLA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRD+L   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----FPKNID-------FIFIGTKSDLYSTYT--EEYD--HLIS 344
            +LL+ + ++  E S     +P+ +D          I  K+DL   +   E+ D  H+  
Sbjct: 298 RVLLVVD-STAPEASDPFALWPEFLDQRPDPAKVTLIRNKADLSGEHVGLEQCDDGHVTI 356

Query: 345 SFTGE----GLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397
           + + +    GL+ L + +K+ +   +  +  FS  + +RHL  L Q   +LE   A L  
Sbjct: 357 TLSAKGDDTGLQLLRDHLKACMGYEQTAESGFS--ARRRHLDALRQASEHLEHGRAQLTL 414

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 415 AGAG-ELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|205829218|sp|A5F485|MNME_VIBC3 RecName: Full=tRNA modification GTPase mnmE
          Length = 453

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+G+
Sbjct: 4   DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 63  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E    ++I        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 302 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G++ L   +K  +     +      + +RHL  L +   +L +     E     +I+AE
Sbjct: 362 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|239946722|ref|ZP_04698475.1| tRNA modification GTPase TrmE [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920998|gb|EER21022.1| tRNA modification GTPase TrmE [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 445

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 161/456 (35%), Positives = 257/456 (56%), Gaps = 33/456 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD----GRIL 61
           ETIFA S+    + +++ R+SGP   +V + +  +K     K+ L Y+  +       ++
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELI 58

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  +++ F SP SFTGED  E H HG  A+   ++  L  + ++RLA  GEF++RAF N 
Sbjct: 59  DNAMVVYFKSPGSFTGEDVVEIHTHGSKAISIMLINALLNIADIRLAEAGEFTKRAFLNN 118

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K DL  AE +ADLI++ET MQ R ++   SG L  LY  W  +L  I S +EA +DF  +
Sbjct: 119 KFDLTAAEGIADLINAETIMQHRQAIRQASGGLEELYNNWRSQLLKIISLLEAYIDFP-D 177

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+ +    +V N    L N+IS++++  + GE++ +G K+ I+G  N GKSSL N L +
Sbjct: 178 EDIPDSVLNDVNNTHKNLVNEISNYLNDNRRGELLNSGLKLAIIGPPNVGKSSLLNFLMQ 237

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300
           +D+AIV++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + AD
Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTAD 297

Query: 301 LILLL-------KEIN-------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           + +++         IN        +  I+    ID I     S ++S   +     +S  
Sbjct: 298 IKIIMFDAEKLDSSINEDIINLIDENTITIINKIDLI---EASKIFSIENKYKCLRVSVK 354

Query: 347 TGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
               L  ++  I++I  N   F + P+   +++RH ++L Q + +L   SL   D  L +
Sbjct: 355 NNIALSSILKNIENIAENMAGFTETPY--ITNQRHRHYLKQALLHLTAFSL---DNDLVL 409

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E++R+ +  +G ITG ++VE++L  IF  FCIGK
Sbjct: 410 ATEDIRMTARCIGTITGVINVEEILGEIFKNFCIGK 445


>gi|205422224|sp|A3DAS7|MNME_SHEB5 RecName: Full=tRNA modification GTPase mnmE
          Length = 453

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 251/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P  R A    F    G+++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDKASNVAMAVLGHL-PKTRYADYCDFKSASGQVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI +  E   + +++ + GE S    + +D++T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATCEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  + + +    +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348
            +  +   +             P N+    I  K+DL       TEE     + IS+ TG
Sbjct: 302 VDGTTTAAVDPHAIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++AE
Sbjct: 362 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|19114056|ref|NP_593144.1| mitochondrial GTPase (predicted) [Schizosaccharomyces pombe 972h-]
 gi|14194952|sp|Q9UTE7|MSS1_SCHPO RecName: Full=tRNA modification GTPase mss1, mitochondrial; Flags:
           Precursor
 gi|6433990|emb|CAB60697.1| mitochondrial GTPase (predicted) [Schizosaccharomyces pombe]
          Length = 496

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 164/481 (34%), Positives = 262/481 (54%), Gaps = 48/481 (9%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRIL 61
           H+  TI+A+ST    SA++I+R+SGP+  +V + +     P PR ASLR     +   ++
Sbjct: 21  HQIPTIYALSTPPGTSAVAIVRISGPNACKVAKTLAGSV-PKPRIASLRTIKHPVRSEVI 79

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK--MPNLRLANPGEFSRRAFE 119
           DK L++ F  P SFTGED  E  +HGG AVV+  LE + +  +PN+R A PGEFS RAF 
Sbjct: 80  DKALMLYFKKPSSFTGEDVVELQLHGGTAVVDVTLEAIKQSGIPNIRYAKPGEFSERAFY 139

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+ DL + E L D+I+++T  Q   + +   G +  +  +W  KL   R+F+EA +DFS
Sbjct: 140 NGRADLTQLEGLIDVINAQTAEQLYSANKEAHGSIYDICFRWRKKLIEYRAFLEASIDFS 199

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE ++ +  + ++  ++  +K++I +HI  GK  E++R G  + ILG SNAGKSSL N L
Sbjct: 200 EEHELDDIETIKLFEELNEMKDEIDAHIEGGKCKEVLRKGINVAILGPSNAGKSSLINLL 259

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVE 297
           A + ++IV+   GTTRD + + +D+ G+ V +SDTAG+R+ +D+  +EK GI+      E
Sbjct: 260 ANRRISIVSPQSGTTRDAIEVLVDINGFPVLLSDTAGLRKGEDVQEIEKIGIEIAKARAE 319

Query: 298 NADLILLLKEIN--------SKKEI------SFPKNIDFIFIGTKSDLYSTYT------- 336
            + L L +  IN         + EI         +     F+  K D  S YT       
Sbjct: 320 ESQLTLFVFPINYHSFSESLKQSEILETIKDCLRQRKPIHFLINKVDCVSDYTTMFKPIK 379

Query: 337 ----------EEYDHLISSFTGEGLEELINKIKSI-------LSNKFKKLPFSIPSHKRH 379
                     E   H +S  T EGL + +  + S        L+N   K+  ++  ++R 
Sbjct: 380 AYLQKNFLIPENRIHAVSCKTKEGLIDFLQALSSTFECMVNPLTN--NKIQANLGWNERQ 437

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439
                 +     ++   +K   + + AE ++LA+  +G++TG VD+E +  +IFSKFC+G
Sbjct: 438 --RQCLSSCSSHLSLALQKSSDIVVAAEEVKLATEDIGRVTGAVDMENVFSVIFSKFCVG 495

Query: 440 K 440
           K
Sbjct: 496 K 496


>gi|190171254|gb|ACE63697.1| ThdF [Leclercia adecarboxylata]
          Length = 439

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 155/433 (35%), Positives = 242/433 (55%), Gaps = 23/433 (5%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRISGQKAREVAEAVLGKL-PKPRYADYLPFKDTDGTALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   +  +
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLNAV 188

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
            ND+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL 
Sbjct: 189 MNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR 248

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS---- 315
             + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +     
Sbjct: 249 EHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTAAVDPAAI 308

Query: 316 -------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTGEGLEELINKIKSIL 362
                   P N+    +  K+D+        D   H    +S+ TGEG++EL + +K  +
Sbjct: 309 WPDFIARLPANLPITVVRNKADVTGETLGLSDVNGHSLIRLSARTGEGVDELRDHLKQSM 368

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKIT 420
                 +     + +RHL  L +  ++L+   A L     G +++AE LRLA  +L +IT
Sbjct: 369 GFD-TSMEGGFLARRRHLQALEEAAQHLDQGKAQLLGAWAG-ELLAEELRLAQQALSEIT 426

Query: 421 GCVDVEQLLDIIF 433
           G    + LL  IF
Sbjct: 427 GEFTSDDLLGRIF 439


>gi|190171218|gb|ACE63679.1| ThdF [Enterobacter hormaechei ATCC 49162]
          Length = 439

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 157/435 (36%), Positives = 241/435 (55%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTPLDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   + 
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ND+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 187 QVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +   
Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+D+        D   H    +S+ TGEG+E+L N +K 
Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVEDLRNHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +      +     + +RHL  L +  R+LE   A L     G +++AE LRLA  +L +
Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGAWAG-ELLAEELRLAQQNLSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 425 ITGEFTSDDLLGRIF 439


>gi|254282403|ref|ZP_04957371.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR51-B]
 gi|219678606|gb|EED34955.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR51-B]
          Length = 450

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 173/460 (37%), Positives = 259/460 (56%), Gaps = 39/460 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILD 62
           +K+TI A++T      + IIRLSGP    + E IC    P  PR A  R F       +D
Sbjct: 7   DKDTIAAIATPPGRGGVGIIRLSGPRALPIAEAICGG--PLAPRTAHFRSFSDQQNDAID 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G+ + FP+P SFTGED  E   HGG  + + +LE   ++   R+A PGEFS RAF N K
Sbjct: 65  NGIALSFPAPHSFTGEDVVELQGHGGPVIQSLLLERCLEL-GARMARPGEFSERAFLNDK 123

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDF 178
           IDL++AE++ADLI ++T    + +   +SG    +L++L G  +D    +R ++EA +DF
Sbjct: 124 IDLVQAEAIADLIDAQTRSAAKQAKASLSGRFSDQLTALAGTILD----LRKYVEAAIDF 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            +E D+   +  +V   +  L N+    ++  + G I+R G ++V+ G  NAGKSSL N 
Sbjct: 180 PDE-DIDFLAEGKVAGQLTALANNAKELLAGARRGAIVRAGAQVVLAGKPNAGKSSLMNR 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA   VAIVTD+PGTTRD+L   ++L G  + ++DTAG+R+++D VE+EG+KR    +E 
Sbjct: 239 LAGDAVAIVTDVPGTTRDLLRQPIELGGVALHLTDTAGLRDSEDTVEQEGVKRARSAIEM 298

Query: 299 ADLILLLKEINSKKEISFPKN----ID--FIFIGTKSDLYSTYTEEYDH------LISSF 346
           AD+IL +  I+  +  S P N    ID   + +  K DL        +        IS+ 
Sbjct: 299 ADVILHV--IDDTQTDSAPSNSTETIDGKTLLVYNKIDLSGRKPGHIEGESTAAVAISTK 356

Query: 347 TGEGL---EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDC 400
           TG G+   EE++  I  + ++   + PFS  + +RH+  L +TV      +L +      
Sbjct: 357 TGAGMASFEEVLLGILGVSTD--TEDPFS--ARERHIRIL-ETVNNSLATALEQFLLSGA 411

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G +++AE+LRL    LG+ITG V  E LL  IFS FCIGK
Sbjct: 412 G-ELLAEDLRLTHDQLGEITGRVTTEDLLGEIFSNFCIGK 450


>gi|153212987|ref|ZP_01948581.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae 1587]
 gi|124116213|gb|EAY35033.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae 1587]
          Length = 464

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+G+
Sbjct: 15  DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 73

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 74  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 133

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 134 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 192

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 193 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 252

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 253 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 312

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E    ++I        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 313 VDGTTTEATDPQDIWPDFFDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 372

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G++ L   +K  +     +      + +RHL  L +   +L +     E     +I+AE
Sbjct: 373 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 431

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 432 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464


>gi|205829220|sp|Q31DJ0|MNME_THICR RecName: Full=tRNA modification GTPase mnmE
          Length = 451

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 153/449 (34%), Positives = 250/449 (55%), Gaps = 18/449 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + I+R+SG    ++ E +  K  P PR A    F G +G++LD+G+
Sbjct: 7   DTIAAIATAPGRGGVGIVRVSGIKAAEIAEHVLGKC-PKPRYAHYGPFLGAEGQVLDQGI 65

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGE+  E   HGG  ++  +LE + ++   RLA PGEFS++AF N K+DL
Sbjct: 66  ALFFPNPHSFTGENVLELQGHGGPVILQWLLERVVQL-GARLAEPGEFSKQAFLNDKLDL 124

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + ++   R ++  + G+ S+   + +++L  +R ++EA +DF EEE + 
Sbjct: 125 AQAEAIADLIDASSQQAARSALRSLQGDFSNQVNELVEQLIQLRIYVEAAIDFPEEE-ID 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  +V   +  +   +   ++  + G ++R G  +VILG  NAGKSSL NAL+ ++ A
Sbjct: 184 FLSDGKVAGQLQHILEQLHRVLASAQQGVLLREGMSVVILGRPNAGKSSLLNALSGRESA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRD++  ++ ++G  + + DTAG+RE  D VE+ GI+R +  +E AD IL++
Sbjct: 244 IVTDIAGTTRDIVKEEIQIDGMPLHVLDTAGLREATDAVEQIGIQRAWAAIEEADRILVM 303

Query: 306 KEINSKKEIS-------FPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGEGLE 352
            + N              P +I    I  K DL     E      E +  +S+    GL+
Sbjct: 304 VQANEAIHPEDQAILEKMPSHIPVTLIHNKIDLIEKSPELSENDGETEIWLSAKHHLGLD 363

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRL 411
            L   +K+ +     +    + + KRHL  L   + ++E      E     +++AE+LR 
Sbjct: 364 LLKQHLKTEMGYAQTEEGVFM-ARKRHLEALETALHFVETGQQQLEHFAAGELLAEDLRQ 422

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +L +ITG    + LL  IF+ FCIGK
Sbjct: 423 AQQALSEITGQFTSDDLLGRIFTSFCIGK 451


>gi|126643000|ref|YP_001085984.1| tRNA modification GTPase TrmE [Acinetobacter baumannii ATCC 17978]
          Length = 406

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 159/410 (38%), Positives = 240/410 (58%), Gaps = 22/410 (5%)

Query: 48  ASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107
           A  R F+  DG I+D+G+++ FP+P SFTGED  E   HGG  + N +L  L ++  +  
Sbjct: 2   AGFRKFYDADGSIMDEGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAIA- 60

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A  GEFS RAFENGK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL +
Sbjct: 61  AKAGEFSMRAFENGKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIY 120

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA +DF EEE +   +  ++L  +  ++  + +  +  + G+++R G ++VI G 
Sbjct: 121 LRLHVEAAIDFPEEE-IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGK 179

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL NALA  + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKE
Sbjct: 180 PNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKE 239

Query: 288 GIKRTFLEVENADLILLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEE 338
           GI+R   E+E ADL+LL+ ++N         +  F ++I+    + IG K DL     E 
Sbjct: 240 GIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEI 299

Query: 339 YD-----HLISSFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
            D     H+  S   E G++ L++ I +     F     +  +  RHL  + +T  YL  
Sbjct: 300 SDYQGFRHITVSAKQEMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAE 357

Query: 393 A--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   L   + G +++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 358 AREQLVVFNAG-ELVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 406


>gi|190150819|ref|YP_001969344.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307264169|ref|ZP_07545762.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915950|gb|ACE62202.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870489|gb|EFN02240.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 452

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 167/458 (36%), Positives = 256/458 (55%), Gaps = 29/458 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           K+TI A +T      +SI+R+SGP   +V + +  K+   PR A+   F   DG +LD+G
Sbjct: 2   KDTIVAQATPIGRGGVSILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ + K+  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILKIKGIRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-I 179

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LNDI+   N +     QG    I+R G K+VI G  NAGKSSL NALA 
Sbjct: 180 DFLADGKIEGHLNDIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAG 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVT+I GTTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD 
Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADH 296

Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----IS 344
           +LL+ +   +   +F           P+NI    I  K DL       +E D      +S
Sbjct: 297 VLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402
           + T  G++ L   +K  +  +         + +RHL  L     +LE     L +   G 
Sbjct: 357 AQTKVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG- 414

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 415 ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|330987014|gb|EGH85117.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 456

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 167/461 (36%), Positives = 248/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +  P PR A    F    G+ 
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLASKAAEAIIGRT-PKPRFAHYGPFVDKAGQT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|28896776|ref|NP_796381.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838496|ref|ZP_01991163.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AQ3810]
 gi|260361954|ref|ZP_05774959.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus K5030]
 gi|260876535|ref|ZP_05888890.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AN-5034]
 gi|260897408|ref|ZP_05905904.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus Peru-466]
 gi|31340459|sp|Q87TR6|MNME_VIBPA RecName: Full=tRNA modification GTPase mnmE
 gi|28804984|dbj|BAC58265.1| thiophene and furan oxidation protein ThdF [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149748119|gb|EDM58978.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AQ3810]
 gi|308087879|gb|EFO37574.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus Peru-466]
 gi|308090361|gb|EFO40056.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AN-5034]
 gi|308114188|gb|EFO51728.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus K5030]
 gi|328471230|gb|EGF42132.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 10329]
          Length = 453

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 163/454 (35%), Positives = 246/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A +T      + IIR+SGP   QV  E   K  KP  R A    F   DG +LD+G
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKTLKP--RYAEYLPFQAEDGTVLDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+D
Sbjct: 62  IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIAGVRAARPGEFSERAFLNDKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF EEE +
Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE-I 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+ 
Sbjct: 181 DFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L 
Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLF 300

Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFT 347
           +      +    KEI        P++I    I  K+D            +     +S+ T
Sbjct: 301 MVDGTTTDATDPKEIWPDFVDRLPESIGMTVIRNKADQTGEDMGICHVNDPTLIRLSAKT 360

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           G G++ L N +K  +            + +RHL  L +  ++L++     E     +I+A
Sbjct: 361 GAGVDALRNHLKECMGFS-GNTEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGEILA 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 420 EELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|114565212|ref|YP_752726.1| tRNA modification GTPase TrmE [Shewanella frigidimarina NCIMB 400]
 gi|122298225|sp|Q07VS7|MNME_SHEFN RecName: Full=tRNA modification GTPase mnmE
 gi|114336505|gb|ABI73887.1| tRNA modification GTPase trmE [Shewanella frigidimarina NCIMB 400]
          Length = 453

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 160/453 (35%), Positives = 253/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   I     P  R A    F   DG+++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDLATNVATAIIGHV-PKTRYAEYCDFNNADGQVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEIDGIRIARPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S    + +D++T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  + + + +  +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIANALYKIISKLDTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTLDTVEQIGIERAWAEIASADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYD---HLISSFTG 348
            +  +   ++            P  +    +  K+DL       TEE     + IS+ TG
Sbjct: 302 VDGTTTDAVNPHEIWPDFIDRLPAKLGVTVVRNKADLTGETLDKTEEQGSCVYRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G++EL   +KS++  +   L     + +RHL  L     +L++     E     +++AE
Sbjct: 362 LGIDELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAANHLQLGKEQLEVYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+  ++L +ITG    + LL  IF  FCIGK
Sbjct: 421 ELRMTQMALSEITGKFTSDDLLGKIFGSFCIGK 453


>gi|330800057|ref|XP_003288056.1| hypothetical protein DICPUDRAFT_152248 [Dictyostelium purpureum]
 gi|325081944|gb|EGC35443.1| hypothetical protein DICPUDRAFT_152248 [Dictyostelium purpureum]
          Length = 503

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 169/483 (34%), Positives = 265/483 (54%), Gaps = 55/483 (11%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD-GRIL 61
           K+TIF +S+G   S ++I+R+SGP    V + + KK   +P  R A+L  F+       +
Sbjct: 29  KDTIFNLSSGVGKSGVAIVRVSGPDSKLVLKELTKKSNIEPKERLATLSTFYHPKTNEQV 88

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           DKG+ + FPSP SFTGED  EFH+HGG AV++  L+ ++ +   R +  GEF+RRAFENG
Sbjct: 89  DKGIFVWFPSPNSFTGEDVVEFHIHGGRAVISETLDAISSVDGTRPSEQGEFTRRAFENG 148

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL + E L+DL+ + T  Q++++++ M G +   Y      L    +++EA +DF ++
Sbjct: 149 KMDLTQIEGLSDLLDASTSYQKKIALKQMQGSIGQFYFSLRKDLIRASAYMEAFIDFGDD 208

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            ++ N + ++    I+ +++ I +H+  G+ GE +R+G  I I+G  N+GKSSL N L+ 
Sbjct: 209 AEIDNETVEQSKRSIIAIRDKIQAHLDDGRRGERLRDGASIAIVGPPNSGKSSLINLLSN 268

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300
           +  +IV+ I GTTRD++ + LD+ GY V I DTAG+R  T+DI+EKEGI+        +D
Sbjct: 269 RKASIVSPIAGTTRDIVEVTLDIGGYPVVIGDTAGLRLSTNDIIEKEGIEMAKDRFNQSD 328

Query: 301 LILLLKEINS-------------KKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHL---- 342
           + L L + N              +  ++F  N + I I  K DL    +++ +  L    
Sbjct: 329 IKLFLFDSNQLFNLDNNSNDNELENLLNFIDN-ETIIIFNKFDLIKNSSQDKWSQLKSNI 387

Query: 343 -----------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHL 383
                            IS      ++ELI+ +K  LSN F+      P  +  R+  HL
Sbjct: 388 LEKIKTKNNLTNVQSIEISCNENIKIKELISLLKLNLSNMFEMNDQESPLLTRARYKQHL 447

Query: 384 SQTV----RYLEMASLNEKDCGLDII--AENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437
           ++ V    RYL         C  DI+  +E LR A +S+  IT  VD+  LLD+IF  FC
Sbjct: 448 TECVESLDRYLYY-------CDEDIVIASEELRRALLSISAITHPVDLNDLLDVIFRDFC 500

Query: 438 IGK 440
           IGK
Sbjct: 501 IGK 503


>gi|319788687|ref|YP_004148162.1| tRNA modification GTPase TrmE [Pseudoxanthomonas suwonensis 11-1]
 gi|317467199|gb|ADV28931.1| tRNA modification GTPase TrmE [Pseudoxanthomonas suwonensis 11-1]
          Length = 445

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 154/446 (34%), Positives = 251/446 (56%), Gaps = 16/446 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + I+RLSGP    +   +C ++   PR+A   +F   DG ++D G+
Sbjct: 5   DTIAAIATAPGAGGVGIVRLSGPEALAIAAALCGREA-APRRALRAFFREADGAVIDDGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED AE   HG   V+  ++E   ++   R A PGEFS RAF NGK+DL
Sbjct: 64  VLAFPGPHSFTGEDVAELQAHGSPVVLQRLVERCREL-GARQARPGEFSERAFLNGKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ADLI++      R +   + G  S       D L  +R  +EA +DF +E  ++
Sbjct: 123 VQAEAIADLIAASDLRAARAARRSLEGVFSRQVEDASDALLRLRIHVEAAIDFVDEP-IE 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                +V   +  L++++   +++ + G  +R+G   V+LG  NAGKSSL NALA    A
Sbjct: 182 TLGLPQVATALARLQDELGELLARAERGRRLRDGLHAVLLGPPNAGKSSLLNALAGDARA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV D+ GTTRDVL   + ++G  + ++DTAG+RE  D +E+EG++R   EVE ADL LL+
Sbjct: 242 IVADVAGTTRDVLREVVRIDGLELVLADTAGLREGGDAIEREGMRRARAEVERADLALLV 301

Query: 306 KEINSKKEI-----SFPKNIDF-IFIGTKSDLYSTYTEEYDHLI--SSFTGEGLEELINK 357
            +  + +          +++   ++I  K+DL      + +  I  S+ TG+GL+ L   
Sbjct: 302 LDARAPQADRAALEEAARDVPLKLWIHNKADLLPRLPADGEDAIHVSALTGQGLDRLHAA 361

Query: 358 IKSILSNKFKKLP---FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
           ++ + ++   +     FS  +  RHL  L + +  + +A+   +   L++ AE LR+A  
Sbjct: 362 LRRLAASGAPEAAEGEFS--ARARHLEALREALDAIAVAAAELEAGQLELAAEQLRMAHD 419

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++G +TG +  +QLL  IFS FCIGK
Sbjct: 420 AMGTLTGRLTADQLLGHIFSSFCIGK 445


>gi|238797848|ref|ZP_04641340.1| tRNA modification GTPase mnmE [Yersinia mollaretii ATCC 43969]
 gi|238718264|gb|EEQ10088.1| tRNA modification GTPase mnmE [Yersinia mollaretii ATCC 43969]
          Length = 454

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 164/454 (36%), Positives = 247/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +   V + +  K  P PR A    F  +DG  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAAAAVAQAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 64  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPELRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  ++    ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEGQLNGVMAELEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFM 302

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348
            +  +                 P  +    +  K+D+       TE   H    +S+ TG
Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPSTLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L N +K  +            + +RHL  L    ++L      L     G +++A
Sbjct: 363 EGIDLLRNHLKQSMGFT-SNTEGGFLARRRHLQALETAAQHLVQGHEQLVSAYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|238783044|ref|ZP_04627071.1| tRNA modification GTPase mnmE [Yersinia bercovieri ATCC 43970]
 gi|238716045|gb|EEQ08030.1| tRNA modification GTPase mnmE [Yersinia bercovieri ATCC 43970]
          Length = 482

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 164/454 (36%), Positives = 247/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +   V + +  K  P PR A    F  +DG  LD+G+
Sbjct: 33  DTIVAQATPPGRGGVGILRVSGRAAAAVAQAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 91

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 92  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 151

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 152 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPDEE-ID 210

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  ++    ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 211 FLSDGKIEGQLNGVMAELEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 270

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 271 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFM 330

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348
            +  +                 P  +    +  K+D+       TE   H    +S+ TG
Sbjct: 331 VDGTTTDATEPAAIWPEFMARLPSTLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 390

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           EG++ L N +K  +            + +RHL  L    ++L      L     G +++A
Sbjct: 391 EGIDLLRNHLKQSMGFT-SNTEGGFLARRRHLQALETAAQHLVQGHEQLVSAYAG-ELLA 448

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 449 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 482


>gi|120556798|ref|YP_961149.1| tRNA modification GTPase TrmE [Marinobacter aquaeolei VT8]
 gi|166200483|sp|A1U7J3|MNME_MARAV RecName: Full=tRNA modification GTPase mnmE
 gi|120326647|gb|ABM20962.1| tRNA modification GTPase trmE [Marinobacter aquaeolei VT8]
          Length = 456

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 162/460 (35%), Positives = 248/460 (53%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI A++T    + + I+R+SGP    +   +   + P PR A    F    G +
Sbjct: 1   MQPATDTIAAIATAPGQAGVGIVRVSGPRAMAIARTMLGFE-PKPRYAHYGPFRDRQGEL 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + FP+P SFTGED  E   HGG  +++ +L E+  +   RLA PGEFS RAF N
Sbjct: 60  IDEGIGLYFPNPHSFTGEDVFELQGHGGTVILDILLREVCSL-GARLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI S +E   R ++  M G  S      ++ +TH+R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIESSSEQAARCAVRSMQGVFSKRVDNLVEAITHLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +  +V +D+  L   +   + + + G I+R+G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGKVASDLQGLLEQVQQILGEAQQGTILRDGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT I GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI R + E+  AD
Sbjct: 238 GREAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDEVEQIGIARAWEEIRQAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            ILL+ +  +  +              P++     I  K DL       S  + +   +I
Sbjct: 298 RILLMVDATTTDKTEPHEIWPDFIDQLPRSAPVTVIRNKVDLSGEPLGISAESHQTAPVI 357

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
             ++   EGLE L   +K  +            + +RHL  L +    L       +  G
Sbjct: 358 RLAAKAAEGLEVLREHLKECIGFA-STTEGGFLARRRHLDALERARDSLLQGQTQLEGYG 416

Query: 402 L-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE+LR A  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 417 AGELLAEDLRAAQDALGEITGHLTPDELLGKIFSSFCIGK 456


>gi|331007811|ref|ZP_08330916.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma
           proteobacterium IMCC1989]
 gi|330418378|gb|EGG92939.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma
           proteobacterium IMCC1989]
          Length = 471

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 255/462 (55%), Gaps = 28/462 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-IL 61
           +  +TI A++T      + IIR+SG     + E I + +   PR A    F   D +  L
Sbjct: 14  YSTDTIAAIATAPGRGGVGIIRISGAKALAIGEKISQHRLT-PRYAHYGDFIDPDTQETL 72

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+G+ + FP+P SFTGED  E H HGG  V++ +L  + +     LA PGEFS RAF N 
Sbjct: 73  DQGISLFFPNPHSFTGEDVVELHGHGGPIVLDQLLRVITR-SGATLAKPGEFSERAFLND 131

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ADLI + +E   R ++  + G  S      +++LT +R ++EA +DF EE
Sbjct: 132 KMDLTQAEAIADLIDANSEQAMRNALNSLQGAFSEQIHTLVEQLTQLRIYVEAAIDFPEE 191

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E +     + + + +  +   ++   +Q K G ++R G K+VI G  NAGKSSL NALA 
Sbjct: 192 E-IDFLQDQHIHSQLHDIHRQLNKVFTQAKQGVLVREGMKVVIAGKPNAGKSSLLNALAG 250

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVT+I GTTRDVL   + L+G  + I DTAG+R ++D+VE+ GI+R ++E+E AD 
Sbjct: 251 REAAIVTNIAGTTRDVLREHIHLDGMPLHIIDTAGLRSSNDVVEQIGIERAWVEIEQADR 310

Query: 302 ILLL--------------KEINSKKEISFPKNIDFIFIG---TKSDL--YSTYTEEYDHL 342
           ILLL               EI    + +  KNID   I     K D    +  T   D++
Sbjct: 311 ILLLIDSTNYNADTPDINTEIRQFIDDNKHKNIDISRISVICNKIDQSGITPNTSMIDNI 370

Query: 343 ----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               +S+    G+E L++ +KS++  K         + +RHL  L++    L  A    +
Sbjct: 371 PVIYLSAKANTGIELLVSHLKSVMGYK-NTAEGGFTARRRHLDALTRADESLVHAMQQLQ 429

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +++AE+LRL+   LG+ITG V  + LL  IFS FCIGK
Sbjct: 430 LGAGELLAEDLRLSQQHLGEITGEVSADDLLGKIFSSFCIGK 471


>gi|149190487|ref|ZP_01868758.1| tRNA modification GTPase TrmE [Vibrio shilonii AK1]
 gi|148835741|gb|EDL52707.1| tRNA modification GTPase TrmE [Vibrio shilonii AK1]
          Length = 474

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 248/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP   +V   +  K    PR A    F   DG  LD+G+
Sbjct: 25  DTIVAQATAPGRGGVGIIRVSGPLAAEVALQVTGKTLK-PRYADYLPFKAQDGSELDQGI 83

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ +++ +  +P +R A PGEFS RAF N K+DL
Sbjct: 84  ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILLIPGVRPARPGEFSERAFLNDKMDL 143

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF EEE + 
Sbjct: 144 TQAEAIADLIDASSEEAAKSALQSLQGQFSKRIQVLVESLIHLRIYVEAAIDFPEEE-ID 202

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++ S   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 203 FLADGKVAGDLQHIIDNLESVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 262

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L +
Sbjct: 263 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWEEIEQADRVLFM 322

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISSFT 347
                 +    KEI        P +I    I  K D  +  T    H+       +S+ T
Sbjct: 323 VDGTTTDATDPKEIWPDFIDRLPSSIGITVIRNKVD-ETGETLGICHVNDPTLIRLSART 381

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           G+G+  L   +K+I+            + +RHL  L +   +L++     E     +I+A
Sbjct: 382 GKGVPALREHLKAIMGFSGAN-EGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEILA 440

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 441 EELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 474


>gi|78486532|ref|YP_392457.1| tRNA modification GTPase TrmE [Thiomicrospira crunogena XCL-2]
 gi|78364818|gb|ABB42783.1| tRNA modification GTPase trmE [Thiomicrospira crunogena XCL-2]
          Length = 475

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 153/449 (34%), Positives = 250/449 (55%), Gaps = 18/449 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + I+R+SG    ++ E +  K  P PR A    F G +G++LD+G+
Sbjct: 31  DTIAAIATAPGRGGVGIVRVSGIKAAEIAEHVLGKC-PKPRYAHYGPFLGAEGQVLDQGI 89

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGE+  E   HGG  ++  +LE + ++   RLA PGEFS++AF N K+DL
Sbjct: 90  ALFFPNPHSFTGENVLELQGHGGPVILQWLLERVVQL-GARLAEPGEFSKQAFLNDKLDL 148

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + ++   R ++  + G+ S+   + +++L  +R ++EA +DF EEE + 
Sbjct: 149 AQAEAIADLIDASSQQAARSALRSLQGDFSNQVNELVEQLIQLRIYVEAAIDFPEEE-ID 207

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  +V   +  +   +   ++  + G ++R G  +VILG  NAGKSSL NAL+ ++ A
Sbjct: 208 FLSDGKVAGQLQHILEQLHRVLASAQQGVLLREGMSVVILGRPNAGKSSLLNALSGRESA 267

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRD++  ++ ++G  + + DTAG+RE  D VE+ GI+R +  +E AD IL++
Sbjct: 268 IVTDIAGTTRDIVKEEIQIDGMPLHVLDTAGLREATDAVEQIGIQRAWAAIEEADRILVM 327

Query: 306 KEINSKKEI-------SFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGEGLE 352
            + N              P +I    I  K DL     E      E +  +S+    GL+
Sbjct: 328 VQANEAIHPEDQAILEKMPSHIPVTLIHNKIDLIEKSPELSENDGETEIWLSAKHHLGLD 387

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRL 411
            L   +K+ +     +    + + KRHL  L   + ++E      E     +++AE+LR 
Sbjct: 388 LLKQHLKTEMGYAQTEEGVFM-ARKRHLEALETALHFVETGQQQLEHFAAGELLAEDLRQ 446

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +L +ITG    + LL  IF+ FCIGK
Sbjct: 447 AQQALSEITGQFTSDDLLGRIFTSFCIGK 475


>gi|126176560|ref|YP_001052709.1| tRNA modification GTPase TrmE [Shewanella baltica OS155]
 gi|125999765|gb|ABN63840.1| tRNA modification GTPase trmE [Shewanella baltica OS155]
          Length = 479

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 251/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P  R A    F    G+++D+G+
Sbjct: 30  DTIVAQATAPGRGGVGIIRISGDKASNVAMAVLGHL-PKTRYADYCDFKSASGQVIDQGI 88

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 89  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKLDL 148

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI +  E   + +++ + GE S    + +D++T++R ++EA +DF +EE V 
Sbjct: 149 TQAEAIADLIDATCEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 207

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++ N +  + + +    +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 208 FLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 267

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L +
Sbjct: 268 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 327

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348
            +  +   +             P N+    I  K+DL       TEE     + IS+ TG
Sbjct: 328 VDGTTTAAVDPHAIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAKTG 387

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++AE
Sbjct: 388 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELLAE 446

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 447 ELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 479


>gi|257485604|ref|ZP_05639645.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331011892|gb|EGH91948.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 456

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 166/461 (36%), Positives = 248/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +  P PR A    F    G+ 
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLASKAAEAIIGRT-PKPRFAHYGPFVDEAGQT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTY----TEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL   +    T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDHIDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    G GLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGAGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|28872710|ref|NP_795329.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213968446|ref|ZP_03396589.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato T1]
 gi|301384266|ref|ZP_07232684.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063883|ref|ZP_07255424.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato K40]
 gi|302131967|ref|ZP_07257957.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|32171793|sp|Q87TS2|MNME_PSESM RecName: Full=tRNA modification GTPase mnmE
 gi|28855966|gb|AAO59024.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213926734|gb|EEB60286.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato T1]
          Length = 456

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 165/461 (35%), Positives = 249/461 (54%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  + I  +  P PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKTAQAITGRM-PKPRFAHYGPFADESGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGVFSQRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLGMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL     +  T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDSIALQTSADGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|241781518|ref|XP_002400281.1| GTPase mss1/trme, putative [Ixodes scapularis]
 gi|215510712|gb|EEC20165.1| GTPase mss1/trme, putative [Ixodes scapularis]
          Length = 382

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 156/382 (40%), Positives = 223/382 (58%), Gaps = 30/382 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGL 65
           TI+A+S+GA+ SA++ IR+SGP+   V   + + K+  PRKA LR     + G  LD  +
Sbjct: 1   TIYALSSGAVRSALATIRVSGPNTASVLRRMARIKRAAPRKALLRRLIHPESGVHLDTAI 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR---AFENGK 122
           +I FPSP S+TGED  E HVHGG AVVNG+L+ L++M +LR A PGEF++R   AF NGK
Sbjct: 61  VIWFPSPRSYTGEDCCELHVHGGAAVVNGVLKALSEMEDLRQAQPGEFTQRQVSAFLNGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL E E LADL+ +ETE QR  ++  M G+LS LY  W+D L    + IEA +DFSE++
Sbjct: 121 MDLAEVEGLADLLQAETEAQRMQALAQMEGDLSKLYRGWMDNLKKCLANIEAFIDFSEDQ 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +              L  +I  H+S G+ GE +R G K+ I+G +N GKSSLFNAL ++
Sbjct: 181 GIDEAILGSAAAQAKRLAKEIQDHLSDGRRGERLRGGVKVAIVGRTNVGKSSLFNALCRR 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIV+ I GTTRDV+   LD+ GY     DTAG+R ++D VE EG+ R       ADL 
Sbjct: 241 DAAIVSPIAGTTRDVVESPLDIGGYPAVFCDTAGLRTSEDPVETEGVLRARRWASAADLA 300

Query: 303 LLLKEIN-----SKKEISFPKNID----------FIFIGTKSDLYSTYTE---------- 337
           L++ +          + S   ++D           +F+  K+DL S              
Sbjct: 301 LVVADCRELLCADGADSSVEAHLDQLGVEPCPGGLLFVLNKTDLLSQEDRALLRERLAGG 360

Query: 338 EYDHLISSF-TGEGLEELINKI 358
           E+D + +S  T EG+ +L+ ++
Sbjct: 361 EHDCVFTSCATHEGIADLVARL 382


>gi|119471653|ref|ZP_01614038.1| tRNA modification GTPase [Alteromonadales bacterium TW-7]
 gi|119445432|gb|EAW26719.1| tRNA modification GTPase [Alteromonadales bacterium TW-7]
          Length = 454

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 168/460 (36%), Positives = 251/460 (54%), Gaps = 33/460 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A +T      + IIR+SG     V E +  K  P  R A    F  L+G  LD+G
Sbjct: 4   QDTIAAQATAPGRGGVGIIRVSGSLAKSVAEKVIGKI-PKVRYADYVPFKNLNGDQLDQG 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + I F  P SFTGED  E   HGG  V++ +L+E++K+ ++RLA PGEFS RAF N K+D
Sbjct: 63  IAIYFAGPNSFTGEDVLELQGHGGPVVLDMLLKEISKIESVRLAKPGEFSERAFMNDKLD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE+++DLI++ +E   + +++ + GE S      ++K+ H+R ++EA +DF +EE +
Sbjct: 123 LTQAEAISDLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEE-I 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              S  +V  D+  + N +++   Q K G I+R G ++VI G  NAGKSSL NALA ++ 
Sbjct: 182 DFLSDGKVSGDLDAIINQLNTVTDQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREA 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++G  + I DTAG+RE+ D VE+ GI+R + E+  AD +L 
Sbjct: 242 AIVTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRESPDRVEQIGIERAWDEINQADRVLF 301

Query: 305 L-----------KEINSKKEISFPKNIDFIFIGTKSDLYSTY-----TEEYDHL-ISSFT 347
           +            +I  +     PK +    I  K+DL          ++Y  + +S+  
Sbjct: 302 MLDGTDTVDTDPHKIWPEFMAKLPKGMGVTVIRNKADLSGDIVGLDENQQYPVISLSAKN 361

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL-------YHLSQTVRYLEMASLNEKDC 400
            EG+E +   +K+ +            + +RHL       YHL      LEM    E   
Sbjct: 362 AEGIELVREHLKACIGFD-GATEGGFMARRRHLDALESAAYHLDTGKTQLEMHVAGE--- 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              I+AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 ---ILAEELRLTQQFLNEITGEFTSDDLLGKIFSSFCIGK 454


>gi|332308614|ref|YP_004436465.1| tRNA modification GTPase TrmE [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175943|gb|AEE25197.1| tRNA modification GTPase TrmE [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 460

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 157/459 (34%), Positives = 254/459 (55%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           +++TI A +T +    + I+R+SG    +V E I     P  R A    F    G  LD+
Sbjct: 9   DQDTIVAQATASGRGGVGIVRVSGTLAAKVAEQIIGHVPPV-RNAQYVPFVSNTGEALDQ 67

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F +P SFTGED  E   HGG  V++ +++   ++P++RLA PGEFS RA+ N K+
Sbjct: 68  GIALYFKAPHSFTGEDVLELQGHGGQVVLDMLIKATLQIPDVRLARPGEFSERAYLNDKL 127

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R ++  + GE S+     ++ LTH+R ++EA +DF +EE 
Sbjct: 128 DLAQAEAIADLIDASSEQAARGALRSLQGEFSTQINHLVELLTHLRIYVEAAIDFPDEE- 186

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  +V ND+  +   +S+  ++ + G ++R G ++VI G  NAGKSSL NALA +D
Sbjct: 187 IDFLSDGKVQNDLSAITAQLSAVKNKAQQGSLLREGMRVVIAGRPNAGKSSLLNALAGRD 246

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT I GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI+R + E+E AD +L
Sbjct: 247 AAIVTAIAGTTRDVLKEHIHIDGMPLHIIDTAGLRDSSDEVERIGIERAWQEIEQADRVL 306

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYDH------LISSF 346
            + +    +E              P  +    I  K+DL      + ++       +S+ 
Sbjct: 307 FMLDSTETQESDPYKIWPDFMQRLPDKMGLTVIRNKADLSGESIGKVEYKGYPVFQLSAS 366

Query: 347 TGEGLEELINKIKSIL----SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
             +G++ L   +K  +    SN+ + +     + +RH+  + +   +L +     E +  
Sbjct: 367 HKQGIDVLAEHLKECMGFHSSNEGQFI-----ARRRHIDAIERAEEHLLLGKQQLEDNLA 421

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 422 GELLAEELRLAQSYLSEITGEFSSDDLLGKIFSSFCIGK 460


>gi|116074031|ref|ZP_01471293.1| tRNA modification GTPase [Synechococcus sp. RS9916]
 gi|116069336|gb|EAU75088.1| tRNA modification GTPase [Synechococcus sp. RS9916]
          Length = 463

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 159/458 (34%), Positives = 254/458 (55%), Gaps = 30/458 (6%)

Query: 6   ETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFG----L 56
           +TI AV+T   P    I++IRLSGP   QV + I      FP +   AS R  +G     
Sbjct: 13  DTIVAVATAVAPGQGGIAVIRLSGPQAQQVVQTIAH----FPGQQEWASHRVLYGHVLAA 68

Query: 57  DG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           DG   LD+ L++V  +P SFT ED  E H HGG+  V  +L  + + P +R A PGEFS+
Sbjct: 69  DGVERLDEVLVLVMQAPRSFTAEDVVEIHCHGGVIAVQRVLARVLEQPGVRRALPGEFSQ 128

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RA  NG++DL  AE++ DL+++ ++   +L+M G+ G +    G   ++L    S +EA 
Sbjct: 129 RAVLNGRLDLTRAEAITDLVAARSQRAAQLAMAGLDGGIQRRIGALRERLLDQLSELEAR 188

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF  EED+       +L ++L +++ +   ++ G+ G+ +R G ++ ++G  N GKSSL
Sbjct: 189 VDF--EEDLPPLDGPALLRELLAVRDALLELVADGERGDALRTGLRVALVGRPNVGKSSL 246

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L++++ AIVTD+PGTTRD+L  ++ LEG  + + DTAGIR T D VE+ GI R+   
Sbjct: 247 LNRLSRRERAIVTDLPGTTRDLLESEIVLEGVPITLLDTAGIRVTTDAVEQLGIARSHDA 306

Query: 296 VENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDLYSTYTEE-----YDHLI 343
           + +ADL+LLL +++              P+ ++ + +G K+DL +    E      D  +
Sbjct: 307 LASADLVLLLFDLSEGWTAEDQALLARIPEGVEHLLVGNKADLAAPVQAEGRPLAVDVQL 366

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
           S+ TG+G  EL+  +         + P  +  ++R +   +     L+ +  +  +    
Sbjct: 367 SAQTGDGEAELVQAMLR-RCGALSEQPLLLALNQRQVDLAAAAAAALQRSEEVAAQGLPW 425

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D    +LR A  SLG+ITG    E +LD IFS+FCIGK
Sbjct: 426 DFWTIDLRQAIQSLGEITGEELTESVLDRIFSRFCIGK 463


>gi|153830815|ref|ZP_01983482.1| tRNA modification GTPase TrmE [Vibrio cholerae 623-39]
 gi|148873699|gb|EDL71834.1| tRNA modification GTPase TrmE [Vibrio cholerae 623-39]
          Length = 453

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 160/453 (35%), Positives = 250/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   +G+ LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDENGQQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 63  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E  + ++I        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 302 VDGTTTEATNPQDIWPDFVDRLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G++ L   +K  +     +      + +RHL  L +   +L++     E     +I+AE
Sbjct: 362 HGVDALRQHLKECMGFAGNQ-EGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEILAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|262167093|ref|ZP_06034808.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
           RC27]
 gi|262024479|gb|EEY43165.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
           RC27]
          Length = 453

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 248/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+G+
Sbjct: 4   DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 63  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVSADLQTIIDNLVAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E    ++I        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 302 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G++ L   +K  +     +      + +RHL  L +   +L +     E     +I+AE
Sbjct: 362 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|312964013|ref|ZP_07778484.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens WH6]
 gi|311282048|gb|EFQ60658.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens WH6]
          Length = 456

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 163/461 (35%), Positives = 250/461 (54%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  +ETI AV+T      + I+R+SGP      + I  ++   PR A    F   D  +
Sbjct: 1   MSAPRETIAAVATAQGRGGVGIVRISGPLAGHAAKAISGRELK-PRYAHYGPFLDADESV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGLTLYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQL-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  +++++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLTMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRD+L   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLY----STYTEEYDHLISS 345
            +LL+ +  + + +             P       I  K+DL     +  T    H+  S
Sbjct: 298 RVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKADLTGEAIALATSADGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    G+GLE L + +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSAKSAGDGLELLRDHLKACMGYE-QTSESSFSARRRHLEALRHASAALEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A   LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|113460278|ref|YP_718336.1| tRNA modification GTPase TrmE [Haemophilus somnus 129PT]
 gi|122945114|sp|Q0I0Z2|MNME_HAES1 RecName: Full=tRNA modification GTPase mnmE
 gi|112822321|gb|ABI24410.1| tRNA modification GTPase trmE [Haemophilus somnus 129PT]
          Length = 452

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 163/454 (35%), Positives = 258/454 (56%), Gaps = 22/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A +T      + I+R+SGP   QV E +  K    PR A+   F   DG +LD+G
Sbjct: 3   RDTIVAQATPIGRGGVGILRVSGPLAQQVAEQVLGKTLT-PRMANYLPFKDSDGTVLDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 62  IALYFKAPNSFTGEDVLELQGHGGQIVMDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF +EE +
Sbjct: 122 LAQAEAIADLIEASSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE-I 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   ++   ++ K G I+R G K+VI G  NAGKSSL N LA ++ 
Sbjct: 181 DFLADGKIETHLREIIAKLAKVKNEAKQGAILREGMKVVIAGRPNAGKSSLLNTLAGREA 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+E AD ILL
Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVEKIGIRRAWDEIEQADRILL 300

Query: 305 LKE----------INSKKEISFPKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTG 348
           + +          + S+     P +I    +  K+DL   +   +E + L    +S+ T 
Sbjct: 301 ILDSTENQVELDLVQSEFMAKLPPHIPLTIVRNKADLSGEAEVLDEQNGLAVISLSAKTQ 360

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIA 406
           +G++ L   +K  +  +         + +RHL  L Q   +L+  +  L E   G +++A
Sbjct: 361 KGVDLLRQHLKQSMGYQVCT-EGGFLARRRHLEALEQADIHLQAGLIQLTEFYAG-ELVA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 EELRIAQHHLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|332967862|gb|EGK06958.1| tRNA modification GTPase TrmE [Kingella kingae ATCC 23330]
          Length = 459

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 161/441 (36%), Positives = 242/441 (54%), Gaps = 24/441 (5%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + +IR+SG       + I   K P PR A    F    G  +D GLL+ F +P SFTGED
Sbjct: 23  VGVIRISGKDLLPFAQHITGGKTPKPRTALYTDFVDQHGNAIDNGLLLYFAAPASFTGED 82

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  V+  +L+   ++   R+A  GEF++RAF N K+DL +AES+ADLI + +
Sbjct: 83  VIELQGHGGQIVLQMLLQRCLEL-GARIAEAGEFTKRAFLNNKLDLAQAESVADLIDASS 141

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           +   R+++  + G  S      +D L  +R  +EA LDF EEE +    + +    +  L
Sbjct: 142 QAAARMAVRSLKGAFSQHIHSLVDDLITLRMLVEATLDFPEEE-IDFLEAADAKGKLARL 200

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           +  +S+ + Q   G I+R G  +V++G  N GKSSL NALA  DVAIVT+I GTTRD + 
Sbjct: 201 QAQLSTVLQQAGQGAILREGMNVVLVGAPNVGKSSLLNALAGDDVAIVTNIAGTTRDTVR 260

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL----KEINSKKEI- 314
             + L+G  + I+DTAG+R+TDD+VEK GI+R+   V+NAD+ L+L    + IN   +  
Sbjct: 261 EQITLDGVPIHITDTAGLRQTDDVVEKIGIERSEKAVQNADVALILIDPAEGINPTTQAI 320

Query: 315 --SFPKNIDFIFIGTKSDL-----------YSTYTEEYDHLI--SSFTGEGLEELINKIK 359
               P ++  I +  K DL              +    D LI  S+ TG GL+ L   + 
Sbjct: 321 LDKLPTSLQRIEVHNKIDLRDESASLHNESAGCFLSGADVLIKLSAKTGAGLDLLKQTLL 380

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
             +  + +     + +  RH++ L      LE A+L   +  L+++AE+LRLA V+  +I
Sbjct: 381 DAIGWQGESEGLFL-ARTRHIHALQAAQVELENAALCSNN-QLELLAEHLRLAQVACNEI 438

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG    + LL +IFS+FCIGK
Sbjct: 439 TGEFTADDLLGVIFSRFCIGK 459


>gi|190171190|gb|ACE63665.1| ThdF [Enterobacter cancerogenus]
          Length = 439

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 157/435 (36%), Positives = 240/435 (55%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTSLDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   + 
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ND+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 187 QVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +   
Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+D+        D   H    +S+ TGEG+E L N +K 
Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVEALRNHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +      +     + +RHL  L +  R+LE   A L     G +++AE LRLA  +L +
Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGAWAG-ELLAEELRLAQQNLSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 425 ITGEFTSDDLLGRIF 439


>gi|77461959|ref|YP_351466.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Pf0-1]
 gi|123602666|sp|Q3K429|MNME_PSEPF RecName: Full=tRNA modification GTPase mnmE
 gi|77385962|gb|ABA77475.1| putative tRNA modification GTPase [Pseudomonas fluorescens Pf0-1]
          Length = 456

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 164/461 (35%), Positives = 254/461 (55%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  +ETI AV+T      + I+R+SGP      + I  ++   PR A    FF  + ++
Sbjct: 1   MSAPRETIAAVATAQGRGGVGIVRISGPLASVAAKAISGRELK-PRFAHYGPFFSDNQQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGLALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLEL-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL+ +  ++N++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLSMLDKVRNELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRD+L   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLY----STYTEEYDHLISS 345
            +LL+ +  + +             + P       I  K+DL     +    +  H+  S
Sbjct: 298 RVLLVVDATAPEAADPFALWPEFLETRPDPAKVTLIRNKADLTGEPIALEVSDDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGL+ L + +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSAKSAGEGLDLLRDHLKACMGYE-QTSESSFSARRRHLEALRHASDALEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  SLG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|289548080|ref|YP_003473068.1| tRNA modification GTPase TrmE [Thermocrinis albus DSM 14484]
 gi|289181697|gb|ADC88941.1| tRNA modification GTPase TrmE [Thermocrinis albus DSM 14484]
          Length = 450

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 170/454 (37%), Positives = 258/454 (56%), Gaps = 18/454 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKASLRYFFGLDGR 59
           M  ++E I A++T    SAI ++RLSG    + +  F+  K    PR A L      +GR
Sbjct: 1   MIRQREPIVALATPYGESAIGVLRLSGKGVLEKIKPFLKLKGAVKPRYAHLVTLVDEEGR 60

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+G+L+ +PSP+S+TGED  E  +HG   +++  LE L     +RLA PGEF+RRAF 
Sbjct: 61  EIDEGILVFYPSPKSYTGEDMIELSLHGNPLILHRALE-LFLSAGIRLAEPGEFTRRAFL 119

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DLL+AE++ADLI + TE+  R ++  + GELS    +   +L  + +++EAD++FS
Sbjct: 120 NGKMDLLQAEAVADLIGARTELAVRCALRQLRGELSDRIERIRSQLLELIAYVEADIEFS 179

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+ D+   S +E+L  +  L  D+   ++  ++G  +R G  + I+G  N GKSSLFNAL
Sbjct: 180 EQ-DIPTLSREEILKRLEDLIKDLEDLLATARVGNFLRKGLNLAIVGKPNVGKSSLFNAL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
                AIVTDIPGTTRD L    ++ G  + + DTAGIR T D VE+ G++R+  ++ +A
Sbjct: 239 LGSQRAIVTDIPGTTRDFLQEQWNIGGIPINLVDTAGIRTTTDPVEQMGVQRSIEKLGSA 298

Query: 300 DLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTG 348
            ++LL+ + +   E       S  K+ D I +  K DL      +    E+  ++S+ TG
Sbjct: 299 HIVLLVVDGSKPLEEEDLSIYSMVKDKDHIVVLNKKDLGVCEDTAKAFPEF-VMVSAKTG 357

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRH--LYHLSQTVRYLEMASLNEKDCGLDIIA 406
           +GLE+L  +I    +  +     SI    RH  L   S +V  L    L E+D   +I+ 
Sbjct: 358 DGLEDLRKEILR-RAGFYTAEGGSIYVSARHANLLQNSLSVIKLVYQQLREQDISPEILM 416

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LR A   L ++ G V  E +LD IFS FCIGK
Sbjct: 417 LYLREAVHYLEEVIGTVTTEDVLDSIFSSFCIGK 450


>gi|40063333|gb|AAR38151.1| tRNA modification GTPase TrmE [uncultured marine bacterium 578]
          Length = 449

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 174/455 (38%), Positives = 251/455 (55%), Gaps = 27/455 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY---FFGLDGR 59
           H+ ETI A++T    S I ++R+SGP    + + I +K      KA   Y   F+     
Sbjct: 5   HKVETICALATAIGQSGIGVVRVSGP----LSKAIGQKLLHIELKARHAYYGSFYDKGSN 60

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +DKG+ I FP P S+TGED  EF  HGG++V+  +LE        R A PGEF++RAF 
Sbjct: 61  KIDKGVSIFFPGPNSYTGEDVIEFQGHGGMSVLRKLLET-TTFFGARHAEPGEFTKRAFL 119

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL++AE++ DLI S +E     ++  ++GE S      +  LT +R F+EA +DFS
Sbjct: 120 NGKMDLVQAEAVQDLIQSSSEQSALSAVRSLTGEFSEKINHLLADLTSLRVFVEATIDFS 179

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +EE +    S EV   +  LKN +   +     G I+R+G  + I G  NAGKSSL NAL
Sbjct: 180 DEE-IDFLESHEVSVKLQTLKNLLLEILESANQGAILRDGLYVAIAGKPNAGKSSLLNAL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K+  AIVTDI GTTRDVL   + ++G  + I DTAG+  +++I+E+EGI+R   E+ NA
Sbjct: 239 TKQPSAIVTDIAGTTRDVLKETIHIDGMPLHIIDTAGLHNSNNIIEQEGIRRAHTEINNA 298

Query: 300 DLILLLKEINSK-KEIS-FP---KNIDFIFIGTKSDLYSTYTE--EYDHL----ISSFTG 348
           D++LL+ +   K  + S  P   KN   I I  K DL     E  E  H     +S+  G
Sbjct: 299 DVVLLVYDAKDKLADFSILPEAVKNKPIICIRNKIDLLKAKAEIKEVKHQTEVSLSAKNG 358

Query: 349 EGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
           +G    I+ ++  LS      P       + KRH+  +  T+ Y+  A    +    +++
Sbjct: 359 DG----IDLLRQALSEAAGYKPDGEGVFLARKRHILSIELTLNYVNSAIEQLEGGASELV 414

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LR A +SLG ITG    + LL  IFS FCIGK
Sbjct: 415 AEDLRQAGMSLGTITGEFSSDDLLGEIFSSFCIGK 449


>gi|163803610|ref|ZP_02197476.1| tRNA modification GTPase TrmE [Vibrio sp. AND4]
 gi|159172604|gb|EDP57462.1| tRNA modification GTPase TrmE [Vibrio sp. AND4]
          Length = 453

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 165/457 (36%), Positives = 251/457 (54%), Gaps = 29/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A +T      + IIR+SGP   QV  E   KK KP  R A    F   DG +LD+G
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKKLKP--RYAEYLPFQAGDGTVLDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P SFTGED  E   HGG  V++ +++ +  + ++R A PGEFS RAF N K+D
Sbjct: 62  IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGINDVRAARPGEFSERAFLNDKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF EEE +
Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE-I 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ 
Sbjct: 181 DFLADGKVSGDLQAIIDNLNAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L 
Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLF 300

Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD--HL-------IS 344
           +      +  + K+I        P +I    I  K+D      EE    H+       +S
Sbjct: 301 MVDGTTTDATNPKDIWPDFVDRLPNSIGMTVIRNKADQTG---EEMGICHVNDPTLIRLS 357

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TG G++ L   +K  +            + +RHL  L +  ++L++     E     +
Sbjct: 358 AKTGTGVDALRTHLKECMGFS-GNTEGGFMARRRHLDSLERAAQHLQIGQEQLEGYMAGE 416

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 417 ILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|152979629|ref|YP_001345258.1| tRNA modification GTPase TrmE [Actinobacillus succinogenes 130Z]
 gi|205829052|sp|A6VQS6|MNME_ACTSZ RecName: Full=tRNA modification GTPase mnmE
 gi|150841352|gb|ABR75323.1| tRNA modification GTPase TrmE [Actinobacillus succinogenes 130Z]
          Length = 452

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 168/458 (36%), Positives = 254/458 (55%), Gaps = 29/458 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      + I+R+SGP    V + +  K    PR A+   F   DG  LD+G
Sbjct: 2   KETIVAQATPIGRGGVGILRVSGPLAADVAKAVVGKALK-PRFANYLPFKDEDGTTLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALFFQSPNSFTGEDILELQGHGGQVVLDLLLKRILQVNGVRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDGVIYLRTYVEAAIDFPDEE-I 179

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LNDI+     +    S+ K G I+R G K+VI G  NAGKSSL NALA 
Sbjct: 180 DFLADGKIEGHLNDIIAQLERVR---SEAKQGSILREGMKVVIAGRPNAGKSSLLNALAG 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD 
Sbjct: 237 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGITRAWNEIEQADR 296

Query: 302 ILLL-----------KEINSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---S 344
           +LL+           +++ S+     P +I    I  K+DL       T+E    +   S
Sbjct: 297 VLLMLDSSDPDSRQPEKVRSEFLAKLPSHIPVTIIRNKTDLSGENEGVTQENGFTVIRLS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402
           + T +G++ L   +K  +  +         + +RHL  L +   +L      L E   G 
Sbjct: 357 AQTRQGIDLLREHLKQSMGYQ-TGTEGGFLARRRHLDALEKAAYHLRQGHIQLTEFRAG- 414

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 415 ELLAEELRMVQSHLSEITGQFTSDDLLSNIFSSFCIGK 452


>gi|261250646|ref|ZP_05943221.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio orientalis
           CIP 102891]
 gi|260939215|gb|EEX95202.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio orientalis
           CIP 102891]
          Length = 453

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 247/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP   +V   +  K+   PR A    F   DG  LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPLAAKVALEVTGKEL-RPRYAEYLPFTAEDGAQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ +++ + K+  +R A PGEFS RAF N K+DL
Sbjct: 63  ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILKISGIRTARPGEFSERAFLNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + G  S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 AQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVAADLQTIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEITQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKS-----DLYSTYTEEYDHL-ISSFTG 348
                 +    KEI        P NI    I  K+     DL   +  +   + +S+ TG
Sbjct: 302 VDGTTTDATDPKEIWPDFVDRLPNNIGMTVIRNKADQTGEDLGICHVNDPTLIRLSAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           EG+E L   +K  +            + +RHL  L     +L++     E     +I+AE
Sbjct: 362 EGVEALRTHLKECMGFAGGH-EGGFMARRRHLEALESASDHLDIGQQQLEGYMAGEILAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IF+ FCIGK
Sbjct: 421 ELRIAQQHLSEITGEFSSDDLLGRIFTSFCIGK 453


>gi|325275324|ref|ZP_08141277.1| tRNA modification GTPase TrmE [Pseudomonas sp. TJI-51]
 gi|324099572|gb|EGB97465.1| tRNA modification GTPase TrmE [Pseudomonas sp. TJI-51]
          Length = 456

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 168/463 (36%), Positives = 258/463 (55%), Gaps = 30/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+RLSGP   +  + I  +    PR A    F   DG +
Sbjct: 1   MNIVRETIAAIATAQGRGGVGIVRLSGPLAAKAGQLITGRTLT-PRHAHYGPFRDEDGLV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQV-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + GE S       + L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSKRVHGLTEALIALRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL+ +  ++ ++S+   +   G ++R+G  +VI G  NAGKSSL N LA
Sbjct: 179 EE-IDFLADGHVLSMLDTVRRELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSLLNQLA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRD+L   + ++G  + + DTAG+R TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRATDDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----FPKNID-------FIFIGTKSDLYSTYT--EEYD--HLIS 344
            +LL+ + ++  E S     +P+ +D          I  K+DL       E+ D  H+  
Sbjct: 298 RVLLVVD-STAPEASDPFALWPEFLDQRPDPAKVTLIRNKADLSGERVGLEQSDDGHVTI 356

Query: 345 SFTGE----GLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397
           + + +    GL+ L + +K+ +   +  +  FS  + +RHL  L Q   +LE   A L  
Sbjct: 357 TLSAKGNDAGLQLLRDHLKACMGYEQTAESGFS--ARRRHLEALRQASEHLEHGRAQLTL 414

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              G +++AE+LR A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 415 AGAG-ELLAEDLRQAQHALGEITGALSSDDLLGRIFSSFCIGK 456


>gi|85709802|ref|ZP_01040867.1| tRNA modification GTPase [Erythrobacter sp. NAP1]
 gi|85688512|gb|EAQ28516.1| tRNA modification GTPase [Erythrobacter sp. NAP1]
          Length = 428

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 163/443 (36%), Positives = 248/443 (55%), Gaps = 18/443 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+ E  TIFAVS+G+ P+AI +IR+SGPS       +  +    PR+ASL      +G  
Sbjct: 1   MSSESSTIFAVSSGSPPAAIGVIRISGPSAGLALRQLAGRSFT-PRRASLAVLRDANGDT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L++ F  P + TGED AE H HGG AV+  + + L ++  LR A  GEF+RRAF N
Sbjct: 60  LDQALVLWFEGPATATGEDLAELHCHGGRAVLRAVTKALGEIDGLRPAEEGEFTRRAFAN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL EAE LADL+ +ETE+QR  ++  +S  LSS   +W +++  + + +EA LDFS+
Sbjct: 120 GRIDLAEAEGLADLLEAETELQRAAAVANVSSALSSKINEWREQVLRLSAQVEAALDFSD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+DV +       N I  L   +   + + K  E ++ G+++V+ G  NAGKS+LFNAL 
Sbjct: 180 EDDVSDLPEGFTWN-IEELSLGLGEWLERPK-SEKLKEGFRVVLAGPPNAGKSTLFNALI 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENA 299
           + + AI + I GTTRDV+   + + G      DTAG+R ++D+ +E  GI+R   E+  A
Sbjct: 238 ESEAAITSPIAGTTRDVIERSVAIGGVPFTFVDTAGLRDDSDEEIEVIGIERARDELARA 297

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHLISSFTGEGLEEL-INK 357
           DLIL L       E ++        IG ++D      +    H  S+ +G+G+EEL ++ 
Sbjct: 298 DLILWLGVEGQGPEGAWE-------IGARTDAQDHVAKRSARHNCSAISGQGIEELKLDL 350

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           +++  S+  +  P     + R    L +    LE A        L +I E LR A V+  
Sbjct: 351 VQAARSSLPR--PGEAALNARQHARLREAFDALESARTQSD---LLLIGEELRRARVAFD 405

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           ++ G    E +LD +F +FCIGK
Sbjct: 406 RLVGRATTEDMLDALFGRFCIGK 428


>gi|317050193|ref|YP_004117841.1| tRNA modification GTPase TrmE [Pantoea sp. At-9b]
 gi|316951810|gb|ADU71285.1| tRNA modification GTPase TrmE [Pantoea sp. At-9b]
          Length = 454

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 159/462 (34%), Positives = 251/462 (54%), Gaps = 30/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     +   +  K  P PR A    F   DG +
Sbjct: 1   MSH-SDTIVAQATPPGRGGVGILRISGAKAADIARAVLGKL-PKPRYADYLPFADSDGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S      ++ LT++R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRINALVEALTYLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+++  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNAVIGDLNAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LI 343
            +L + +  +                 P  +    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDATEAAAIWPDFVSRLPAELPITVVRNKADMTGESLGLSEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402
           S+ TG G++ L + +K  +      +     + +RHL  L     +L+      KD  L 
Sbjct: 358 SARTGAGVDTLRDHLKQTMGFS-GNMEGGFLARRRHLQALELAATHLQQG----KDQLLG 412

Query: 403 ----DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 413 AWAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|331017732|gb|EGH97788.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 456

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 165/461 (35%), Positives = 249/461 (54%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  + I  +  P PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKTAQAIIGRM-PKPRFAHYGPFADESGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGVFSQRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLGILDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL     +  T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDSIALQTSADGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|323143419|ref|ZP_08078104.1| tRNA modification GTPase TrmE [Succinatimonas hippei YIT 12066]
 gi|322416824|gb|EFY07473.1| tRNA modification GTPase TrmE [Succinatimonas hippei YIT 12066]
          Length = 456

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 179/470 (38%), Positives = 260/470 (55%), Gaps = 51/470 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDK 63
           ++TI A++T      I+IIR+SG     V + +C    P  RKA  R F+  DG+ I+D+
Sbjct: 4   EDTIAAIATAPGRGGIAIIRVSGSKALDVAKNVCHII-PEARKAYFRKFY--DGQSIVDE 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+L+ FP P S+TGED+ E   HGG      +L  + K+  +R A PGEF+RRAF NGK+
Sbjct: 61  GVLLYFPGPNSYTGEDTVELQGHGGNVAPQRVLSSVLKIAGVRQAEPGEFTRRAFLNGKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE-E 182
           DL  AE++ DLIS+ +E   + ++  + GE ++      DKLT  R  +E  LDF EE E
Sbjct: 121 DLTAAEAVEDLISAGSESAAKAALSSLEGEFAAKLNTLTDKLTTFRMRLEGCLDFPEEHE 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D   F S +  +D+  L       ++  K G  +  G +IV+ G  NAGKSSL NALA +
Sbjct: 181 DF--FDSGKAADDLHDLIAIADESLTTAKQGVKLNEGARIVLAGSPNAGKSSLLNALAGE 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENADL 301
           + AIVT+IPGTTRD+L+I++++ G  V I+DTAGIR+T  D +E  GIKR    ++ ADL
Sbjct: 239 ERAIVTNIPGTTRDILSINIEIGGIPVTITDTAGIRDTPSDEIEAIGIKRAIEMLKKADL 298

Query: 302 ILLLKEINSK-----------KEISFPKNIDFIFIGTKSDL--------------YSTYT 336
           +LL+ + +S            KEI F  N + + I +KSDL              +S Y 
Sbjct: 299 VLLMVDASSPAPEAEHTLKRLKEI-FGDNTNLLLIKSKSDLPENKETAKLLNNPDFSQYK 357

Query: 337 EEYDHLISSFTGE--GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV----RYL 390
           +     ISS T    GL+ L  ++K  L     +  FS  + +RH+  + +T+    R +
Sbjct: 358 Q-----ISSSTKNPTGLDNLRAELKKALGEIPAEGVFS--ARRRHVNAIKETIDALHRSI 410

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           EM  L +    L + A  + +A   LG ITG V  + +L  IFS FCIGK
Sbjct: 411 EMLDLGD----LVLCAREIAIAQDHLGTITGKVTSDDILGKIFSTFCIGK 456


>gi|238753998|ref|ZP_04615357.1| tRNA modification GTPase mnmE [Yersinia ruckeri ATCC 29473]
 gi|238707750|gb|EEQ00109.1| tRNA modification GTPase mnmE [Yersinia ruckeri ATCC 29473]
          Length = 454

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 162/454 (35%), Positives = 249/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +   V + +  K  P PR A    F   DG  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAVAAVAQAVLGKL-PKPRYADYLPFRDTDGTTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 64  VLYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSIRIHQLVEALTHLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  + +D++   ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEGQLNGVMSDLAKVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFM 302

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTG 348
            +  +                 P  +    +  K+D+       T    Y  + +S+ TG
Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADVTDETLGLTEVNGYSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           +G++ L + +K  +            + +RHL  L    ++L      L     G +++A
Sbjct: 363 DGIDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALEMAAQHLVQGKEQLVSNYAG-ELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|254428001|ref|ZP_05041708.1| tRNA modification GTPase TrmE [Alcanivorax sp. DG881]
 gi|196194170|gb|EDX89129.1| tRNA modification GTPase TrmE [Alcanivorax sp. DG881]
          Length = 456

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 162/455 (35%), Positives = 254/455 (55%), Gaps = 25/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + ++RLSGP    +   +  ++   PR A  R F    G +LD+GL
Sbjct: 7   DTIVAIATAPGRGGVGVVRLSGPQALSIASLVVGEQSLSPRVAHFRRFRDQAGEVLDEGL 66

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I FP+P SFTGED  E   HGG  +++ +L         R A  GEFS+RAF N K+DL
Sbjct: 67  VITFPAPHSFTGEDVVELQGHGGPVILD-MLVAACIAAGARQARAGEFSQRAFLNDKMDL 125

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + T    R ++  + G  S    Q ++ L  +R ++EA +DF EEE + 
Sbjct: 126 TQAEAIADLIDAGTSASARAALHSLQGVFSDEVNQLVEALIGLRIYVEAAIDFPEEE-ID 184

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  +V +D+  ++      + +   G ++R G  +VI G  NAGKSSL NALA  D A
Sbjct: 185 FLSDGKVASDLTAVRRQCLRVLDEANQGRLVREGMTLVIAGKPNAGKSSLMNALAGFDAA 244

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD-LILL 304
           IVTDI GTTRDVL   + L+G  + + DTAG+R++ D+VE+EGI+R + E+  AD L+++
Sbjct: 245 IVTDIAGTTRDVLRESIQLDGMPLNLIDTAGLRDSADVVEQEGIRRAYAEMRKADRLLVM 304

Query: 305 LKEINSKKEIS-----FPKN--------IDFIFIGTKSDLY---STYTEEYDHLISSFTG 348
           +   +S+ +I+      P++        +    +  K+DL    +   E+   +IS+ +G
Sbjct: 305 VDSRDSEGDINDIHSLLPQSQQQLENLELPVTVVLNKADLSGLPAGQREDGAFVISAASG 364

Query: 349 EGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           +GLE L   +K     + + +  FS  + +RH+  L Q +  L+     L+    G +++
Sbjct: 365 DGLEALRRHLKDAAGYQGEGQSRFS--ARRRHITALEQALAALDSGERQLHGHAAG-ELL 421

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LR A  +L +ITG    + LL  IFS FCIGK
Sbjct: 422 AEDLRAAQKALEEITGTFTADDLLGRIFSSFCIGK 456


>gi|90413741|ref|ZP_01221729.1| tRNA modification GTPase [Photobacterium profundum 3TCK]
 gi|90325210|gb|EAS41707.1| tRNA modification GTPase [Photobacterium profundum 3TCK]
          Length = 455

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 167/460 (36%), Positives = 251/460 (54%), Gaps = 25/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      + IIR+SGP   +V   +  ++    R A    F   DG  
Sbjct: 1   MNEHTDTIVAQATPPGRGGVGIIRVSGPKAKEVALAVAGRELK-TRYAEYLPFKNEDGTA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F +P SFTGED  E   HGG  +++ ++  + K+  +R A PGEFS RAF N
Sbjct: 60  LDQGIALFFKAPNSFTGEDVLELQGHGGPVLIDMMIRRILKLDGIRPARPGEFSERAFMN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + + + + G  S+   + ++ + H+R ++EA +DF E
Sbjct: 120 DKLDLTQAEAIADLIDASSEEAAKSAFKSLQGVFSTKVNELVEAVIHLRIYVEAAIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  +V ND+  + + + +   +   G IIR G K+VI G  NAGKSSL NAL+
Sbjct: 180 EE-IDFLSDGKVSNDLHAIIDTLKAVRREANQGSIIREGMKVVIAGRPNAGKSSLLNALS 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            KD AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E++ AD
Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWEEIQQAD 298

Query: 301 LILLLKEINSKKEISFPKNI--DFI----------FIGTKSDLYSTYTEEYDHL------ 342
            +L + +  +  +   PK+I  DFI           I  K +L +       H+      
Sbjct: 299 RVLFMVDGTTTNDTD-PKDIWPDFIERLPASMGLTVIRNKVEL-TGEAAGICHVNNPTLV 356

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
            +S+ TGEG++ L   +K  +            + +RHL  L Q  ++LE+     E   
Sbjct: 357 RLSALTGEGVDSLREHLKECMGFS-GTTEGGFMARRRHLEALEQAAQHLEIGKEQLEGFM 415

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +I+AE LRLA   L +ITG    + LL  IF+ FCIGK
Sbjct: 416 AGEILAEELRLAQQYLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|330876348|gb|EGH10497.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 456

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 165/461 (35%), Positives = 249/461 (54%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  + I  +  P PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKTAQAITGRM-PKPRFAHYGPFADESGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGVFSLRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLGMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL     +  T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDSIALQTSADGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|110835613|ref|YP_694472.1| tRNA modification GTPase [Alcanivorax borkumensis SK2]
 gi|123345176|sp|Q0VKU8|MNME_ALCBS RecName: Full=tRNA modification GTPase mnmE
 gi|110648724|emb|CAL18200.1| tRNA modification GTPase [Alcanivorax borkumensis SK2]
          Length = 456

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 163/462 (35%), Positives = 256/462 (55%), Gaps = 29/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    +TI A++T      + ++RLSGP    +   I  ++   PR A    F   DG +
Sbjct: 2   LTSSPDTIVAIATAPGRGGVGVVRLSGPQALSIASSIVGERLLSPRLAHFCRFRNQDGDV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL+I FP+P SFTGED  E   HGG  +++ ++    +    R A  GEFS+RAF N
Sbjct: 62  LDEGLVISFPAPHSFTGEDVVELQGHGGPVILDMLVATCIE-AGARQARAGEFSQRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + T    R ++  + G  S+   Q ++ L  +R ++EA +DF E
Sbjct: 121 DKMDLTQAEAIADLIDAGTAASARAALHSLQGVFSAEVNQLVEALIGLRIYVEAAIDFPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  +V +D+  ++      + +   G ++R G  +VI G  NAGKSSL NALA
Sbjct: 181 EE-IDFLSDGKVASDLRAVRKQCLRVLGEANQGRLVREGMTLVIAGKPNAGKSSLMNALA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTDI GTTRDVL   + L+G  + + DTAG+R++ D+VE+EGI+R + E+  AD
Sbjct: 240 GFDAAIVTDIAGTTRDVLRESIQLDGMPLNLIDTAGLRDSADVVEQEGIRRAYAEMRKAD 299

Query: 301 LILLLKEINSKKEIS--------FPK------NIDF--IFIGTKSDLYSTYT---EEYDH 341
            +L++  ++S+  +          P+      N+D     +  K+DL    T    +   
Sbjct: 300 RLLVM--VDSRDPLDDIHNLHDLLPQSQQQLENLDLPVTVVLNKADLSGLSTGPRADGAF 357

Query: 342 LISSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398
           +IS+  GEGL+ L   +K +   + + +  FS  + +RH+  L + +  LE     L+ +
Sbjct: 358 VISAANGEGLDALRGHLKQVAGYQGEGQSRFS--ARRRHITALEKALMALESGEQQLHGQ 415

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             G +++AE+LR A  +L +ITG    + LL  IFS FCIGK
Sbjct: 416 AAG-ELLAEDLRAAQKALEEITGVFTADDLLGRIFSSFCIGK 456


>gi|298484604|ref|ZP_07002709.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160861|gb|EFI01877.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 456

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 166/461 (36%), Positives = 247/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +  P PR A    F    G+ 
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLASKAAEAIIGRT-PKPRFAHYGPFVDEAGQT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDPIDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    G GLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGAGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|66048357|ref|YP_238198.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. syringae
           B728a]
 gi|81307750|sp|Q4ZL12|MNME_PSEU2 RecName: Full=tRNA modification GTPase mnmE
 gi|63259064|gb|AAY40160.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Pseudomonas syringae pv. syringae
           B728a]
          Length = 456

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 167/461 (36%), Positives = 249/461 (54%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + IIR+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIIRVSGPLAGKAAEAIIGRTLK-PRFAHYGPFVDGTGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL     +  T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPINLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|254483166|ref|ZP_05096399.1| tRNA modification GTPase TrmE [marine gamma proteobacterium
           HTCC2148]
 gi|214036537|gb|EEB77211.1| tRNA modification GTPase TrmE [marine gamma proteobacterium
           HTCC2148]
          Length = 460

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 167/458 (36%), Positives = 249/458 (54%), Gaps = 26/458 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A++T      + I+RLSGP    + E I       PR A    F   +  +LD 
Sbjct: 8   DGDTIAAIATAPGRGGVGIVRLSGPEALVIGESISGLTLS-PRHAHFSKFKNSNENVLDS 66

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E H HGG  V++ +++        R A PGEFS RA+ N KI
Sbjct: 67  GIALYFPGPHSFTGEDVVELHGHGGPVVLDLLIKTCINY-GARQARPGEFSERAYLNDKI 125

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI+S TE     +   + G  S      +  +T +R ++EA +DF EEE 
Sbjct: 126 DLTQAEAIADLINSTTEHAALNASRSLQGVFSQKIDALVTSVTQLRVYVEAAIDFPEEE- 184

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +      +V N +  +   +++ + Q K G + + G K+VI G  NAGKSSL NAL+ +D
Sbjct: 185 IDFIQDGQVSNQLSAIIAQLNAVMHQAKQGSLQQEGMKLVIAGKPNAGKSSLLNALSGQD 244

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT I GTTRDVL   + ++G  + I DTAG+R + D VEKEGI+R + E+E+AD IL
Sbjct: 245 TAIVTAIEGTTRDVLREHIQIDGMPLHIVDTAGLRNSADEVEKEGIRRAWNEIESADHIL 304

Query: 304 LLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYS---TYTEEYDHL---IS 344
           L+ + ++ ++ S             F +NI    I  K DL     + T+  ++    +S
Sbjct: 305 LVVDGSNPEQHSNDPSVIWPDFTEHFSRNIPVSVIRNKCDLSQHEPSVTDSVNYCTIELS 364

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402
           + TG G+  L   +K+ +   +  +  FS  + +RHL  L    + L       ++ G  
Sbjct: 365 AKTGAGMTLLKEHLKTCMGYRQGNETNFS--ARRRHLLSLEGAAKSLTAGQHQLENAGAG 422

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE+LR     LG+ITG V  +QLL  IFS FCIGK
Sbjct: 423 ELLAEDLRACQNLLGEITGAVSSDQLLGEIFSSFCIGK 460


>gi|330964186|gb|EGH64446.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 456

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 165/461 (35%), Positives = 249/461 (54%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  + I  +  P PR A    F    G++
Sbjct: 1   MNVPRETIAAITTAQGRGGVGIVRVSGPLAGKTAQAITGRM-PKPRFAHYGPFADESGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGVFSLRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLGMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL     +  T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDSIALQTSADGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|51473927|ref|YP_067684.1| tRNA modification GTPase TrmE [Rickettsia typhi str. Wilmington]
 gi|81389958|sp|Q68VZ0|MNME_RICTY RecName: Full=tRNA modification GTPase mnmE
 gi|51460239|gb|AAU04202.1| thiophene and furan oxidation protein; tRNA modification GTPase
           [Rickettsia typhi str. Wilmington]
          Length = 445

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 159/454 (35%), Positives = 262/454 (57%), Gaps = 29/454 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61
           ETIFA S+    + +++ R+SGP   +V + +  +K   PR   L Y+  +       ++
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKDFKPR---LMYYQQIISPETNELI 58

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  +++ F  P SFTGED  E H HG  A+   ++  L  + ++RLA  GEF++RAF N 
Sbjct: 59  DNAMVVYFKLPNSFTGEDVVEIHTHGSKAISIMLINTLLNIDDIRLAEAGEFTKRAFLNN 118

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K DL  AE +ADLI++ET MQ R ++   +G L  LY  W ++L  I + +EA LDF  +
Sbjct: 119 KFDLTAAEGIADLINAETIMQHRQAVRQANGGLEELYNNWRNQLLKIIALLEAYLDFP-D 177

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+ +    +V N    + N+IS++++  + GE++ NG K+ I+G  N GKSSL N L +
Sbjct: 178 EDIPDSILNDVNNTHKNIVNEISNYLNDNRRGELLNNGLKLAIIGPPNTGKSSLLNFLMQ 237

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300
           +++AIV++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + A+
Sbjct: 238 RNIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRAESTDIIEREGIKRAINSAKTAN 297

Query: 301 LILLLKEINSKKEISFPKNI------DFIFIGTKSDLYSTYT-----EEYDHL-ISSFTG 348
           + +++ +   K ++S   +I      + I I  K DL          ++Y  L +S    
Sbjct: 298 IKIIMFDA-EKLDLSINNDIIDLIDENTIVIINKIDLIEPSQIFPIEKKYKCLRVSVKNN 356

Query: 349 EGLEELINKIKSILSN--KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
             L  ++  I++I  N   F + P+   +++RH ++L Q + +L   +L   D  L +  
Sbjct: 357 IALSSILKNIENIAENIAGFTETPYI--TNQRHRHYLKQALSHLMAFNL---DNDLVLAT 411

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E++R+ +  +G ITG ++VE++L+ IF  FCIGK
Sbjct: 412 EDMRMTARCIGLITGVINVEEILNEIFKNFCIGK 445


>gi|289628219|ref|ZP_06461173.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649109|ref|ZP_06480452.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330870070|gb|EGH04779.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 456

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 166/461 (36%), Positives = 248/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +  P PR A    F    G+ 
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLASKAAEAIIGRT-PKPRFAHYGPFVDEAGQT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAVRNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
            ILL+ +  + +               P       I  K+DL     +       H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDPIDLQISVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|170729246|ref|YP_001763272.1| tRNA modification GTPase TrmE [Shewanella woodyi ATCC 51908]
 gi|205415805|sp|B1KQ64|MNME_SHEWM RecName: Full=tRNA modification GTPase mnmE
 gi|169814593|gb|ACA89177.1| tRNA modification GTPase TrmE [Shewanella woodyi ATCC 51908]
          Length = 453

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 160/453 (35%), Positives = 250/453 (55%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P  R A    F   +  ++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDKASDVAMAVLGHL-PKTRYADYCDFKDAENAVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+DL
Sbjct: 63  ALYFQGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVDGVRIAKPGEFSEQAFMNDKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + ++  + GE S    + ++++T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALNSLQGEFSVQIHELVEQVTNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +   + S  +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIAGSLNRIITKLDSVQASAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+TDD VE  GI+R + E+E AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTDDTVEMIGIERAWAEIETADQVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDHL---ISSFTG 348
            +  +   +             PKN+    +  K+D+     T T+++ H    IS+ TG
Sbjct: 302 VDGTTTDAVDPREIWPDFIDRLPKNLGITVVRNKADITGEPLTVTQDHGHSVFKISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G+E L   +KS++  +   L     + +RHL  L     +L +     E     +++AE
Sbjct: 362 LGVESLQQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLMIGKEQLEVYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRMTQMALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|225024775|ref|ZP_03713967.1| hypothetical protein EIKCOROL_01662 [Eikenella corrodens ATCC
           23834]
 gi|224942482|gb|EEG23691.1| hypothetical protein EIKCOROL_01662 [Eikenella corrodens ATCC
           23834]
          Length = 455

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 167/446 (37%), Positives = 238/446 (53%), Gaps = 34/446 (7%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + +IRLSG     + + I   K P PR+A    F    G  +D GLL+ FP+P SFTGE
Sbjct: 20  GVGVIRLSGKQLLPLAQQISGGKTPQPRRALHTDFVDAAGEAIDNGLLLYFPAPASFTGE 79

Query: 79  DSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLI 135
           D  E H HGG  V+  +L+   EL   P    A PGEF++RAF NGK+DL +AES+ADLI
Sbjct: 80  DVIELHGHGGRVVLQMLLQRCFELGAQP----AEPGEFTKRAFLNGKLDLAQAESVADLI 135

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            + ++   RL++  + G  S    + +D+L  +R  +EA LDF EE D+   +  +V   
Sbjct: 136 DAASQSAARLAVRSLKGAFSQQIHELVDELITLRMLVEATLDFPEE-DIDFLAEAKVDER 194

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +  L+  +   ++Q + G I+R G  +V++G  N GKSSL NALA +DVAIVTDI GTTR
Sbjct: 195 LAALQERLVRVLAQAEQGAILREGMNVVLVGAPNVGKSSLLNALAGEDVAIVTDIAGTTR 254

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL-------LKEI 308
           D +   + LEG  V I DTAG+R+T D VE+ GI+R+   V+ AD+ L+       L E 
Sbjct: 255 DTVREQITLEGIPVHIIDTAGLRDTTDPVEQIGIERSRQAVQQADVALILIDPNEGLNEA 314

Query: 309 NSKKEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHLI--SSFTGEGLEELINK 357
             K     P  +  I I  K DL     E           D LI  S+  G GL+ L   
Sbjct: 315 TCKILAQLPPGLKRIEIRNKIDLSGEAAESCEQSGQPSGADTLIKLSAKNGAGLDLLKQA 374

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDIIAENLRLASV 414
           +   +  + +     + +  RHL    + +   +        CG   L++ AE+LRLA  
Sbjct: 375 LLQQIGWQGESESLFL-ARSRHL----RALEAAQAELELAALCGRHQLELFAEHLRLAQN 429

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   ITG  + + LL +IFS+FCIGK
Sbjct: 430 ACNTITGEFNADDLLGVIFSRFCIGK 455


>gi|297581962|ref|ZP_06943882.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae RC385]
 gi|297533829|gb|EFH72670.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae RC385]
          Length = 464

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 160/453 (35%), Positives = 248/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+G+
Sbjct: 15  DTIVAQATALGRGGVGIIRVSGPLSAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 73

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS  AF N K+DL
Sbjct: 74  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSEHAFLNDKMDL 133

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 134 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 192

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 193 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 252

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 253 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 312

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E    ++I        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 313 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 372

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
           +G++ L   +K  +     +      + +RHL  L +   +L +     E     +I+AE
Sbjct: 373 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 431

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 432 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464


>gi|37678186|ref|NP_932795.1| tRNA modification GTPase TrmE [Vibrio vulnificus YJ016]
 gi|37196925|dbj|BAC92766.1| thiophene and furan oxidation protein ThdF [Vibrio vulnificus
           YJ016]
          Length = 462

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 244/454 (53%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A +T      + IIR+SGP   QV  E   K  K   R A    F   DG  LD+G
Sbjct: 13  DTIVAQATAPGRGGVGIIRVSGPQAAQVALEVTGKTLKA--RYAEYLPFKAQDGSELDQG 70

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+D
Sbjct: 71  IALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTISGVRPARPGEFSERAFLNDKMD 130

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF EEE +
Sbjct: 131 LTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPEEE-I 189

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ KD 
Sbjct: 190 DFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKDS 249

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L 
Sbjct: 250 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIRQADRVLF 309

Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFT 347
           +      +    KEI        P+ I    I  K+D           ++     +S+ T
Sbjct: 310 MVDGTTTDATDPKEIWPDFIDRLPEQIGITVIRNKADQTQESLGICHVSQPTLIRLSAKT 369

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           G+G+E L N +K  +            + +RHL  L +   +L +     E     +I+A
Sbjct: 370 GQGVEALRNHLKECMGFSGNS-EGGFMARRRHLDALQRAAEHLLIGQEQLEGYMAGEILA 428

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 429 EELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 462


>gi|190171252|gb|ACE63696.1| ThdF [Leclercia adecarboxylata ATCC 23216]
          Length = 439

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 154/433 (35%), Positives = 242/433 (55%), Gaps = 23/433 (5%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRISGQKAREVAEAVLGKL-PKPRYADYLPFKDTDGTALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   +  +
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLNAV 188

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
            +D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL 
Sbjct: 189 MSDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR 248

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS---- 315
             + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +     
Sbjct: 249 EHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTAAVDPAAI 308

Query: 316 -------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTGEGLEELINKIKSIL 362
                   P N+    +  K+D+        D   H    +S+ TGEG++EL + +K  +
Sbjct: 309 WPDFIARLPANLPITVVRNKADVTGETLGLSDVNGHSLIRLSARTGEGVDELRDHLKQSM 368

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKIT 420
                 +     + +RHL  L +  ++L+   A L     G +++AE LRLA  +L +IT
Sbjct: 369 GFD-TSMEGGFLARRRHLQALEEAAQHLDQGKAQLLGAWAG-ELLAEELRLAQQALSEIT 426

Query: 421 GCVDVEQLLDIIF 433
           G    + LL  IF
Sbjct: 427 GEFTSDDLLGRIF 439


>gi|46577354|sp|Q7MQK6|MNME_VIBVY RecName: Full=tRNA modification GTPase mnmE
          Length = 453

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 244/454 (53%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A +T      + IIR+SGP   QV  E   K  K   R A    F   DG  LD+G
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPQAAQVALEVTGKTLKA--RYAEYLPFKAQDGSELDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+D
Sbjct: 62  IALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTISGVRPARPGEFSERAFLNDKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF EEE +
Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPEEE-I 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ KD 
Sbjct: 181 DFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKDS 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L 
Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIRQADRVLF 300

Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFT 347
           +      +    KEI        P+ I    I  K+D           ++     +S+ T
Sbjct: 301 MVDGTTTDATDPKEIWPDFIDRLPEQIGITVIRNKADQTQESLGICHVSQPTLIRLSAKT 360

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           G+G+E L N +K  +            + +RHL  L +   +L +     E     +I+A
Sbjct: 361 GQGVEALRNHLKECMGFSGNS-EGGFMARRRHLDALQRAAEHLLIGQEQLEGYMAGEILA 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 420 EELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|261213270|ref|ZP_05927552.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC341]
 gi|260837544|gb|EEX64247.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC341]
          Length = 453

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 160/453 (35%), Positives = 248/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   +G+ LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRML-RPRYAEYLPFTDENGQQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 63  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      +  L H+R ++EA +DF EEE + 
Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVGSLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301

Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348
                 E    ++I        P+NI    I  K+D     L   +  +   + +S+ TG
Sbjct: 302 VDGTTTEATDPQDIWPDFVDRLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G++ L   +K  +     +      + +RHL  L +   +L++     E     +I+AE
Sbjct: 362 HGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEILAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|17544724|ref|NP_518126.1| tRNA modification GTPase TrmE [Ralstonia solanacearum GMI1000]
 gi|17427013|emb|CAD13533.1| probable trna modification gtpase trme protein [Ralstonia
           solanacearum GMI1000]
          Length = 481

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 154/459 (33%), Positives = 245/459 (53%), Gaps = 29/459 (6%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A++T      I ++R+SGP    V + +C +  P PR+A+   F   DG  +D+G+ +
Sbjct: 26  IAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRLLP-PRQATYLPFLDADGAAIDRGIAL 84

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKID 124
            FP+P S+TGED  E   HGG  V+  +L    +  +   LR+A PGEF+RRAF N K+D
Sbjct: 85  WFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLRAGHGIGLRVAEPGEFTRRAFLNDKLD 144

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + TE   R +   + G  S      ++++ H+R  +EA LDF EEE +
Sbjct: 145 LAQAEAVADLIEASTEAAARSAARSLDGVFSQTVHALVERVIHLRMLVEATLDFPEEE-I 203

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +    +  ++  +   ++Q + G ++R G  +V+ G  N GKSSL NALA  ++
Sbjct: 204 DFLEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAEL 263

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT+  +  AD++L 
Sbjct: 264 AIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLH 323

Query: 305 L---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTY------TEEYDHLI 343
           L                 I+++     P  +  + +  K DL           +  +  +
Sbjct: 324 LLDAADYRAHGLSAEDAAIDARIAEHVPPGVPTLRVINKIDLAGAAVPGRVDAQPPEVWL 383

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCG 401
           S+  G G+E L   +  I   +       + + +RHL  L     +L +A+   +++   
Sbjct: 384 SARDGSGIELLRAALLEIAGWQGGGEGLYL-ARERHLSALRSAREHLTIAADHADQRAQS 442

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 443 LDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 481


>gi|262392791|ref|YP_003284645.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. Ex25]
 gi|262336385|gb|ACY50180.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. Ex25]
          Length = 453

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 166/457 (36%), Positives = 246/457 (53%), Gaps = 29/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A +T      + IIR+SGP   QV  E   K  KP  R A    F   DG +LD+G
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKTLKP--RYAEYLPFKSEDGTVLDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+D
Sbjct: 62  IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGIRAARPGEFSERAFLNDKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + G  S      ++ L H+R ++EA +DF EEE +
Sbjct: 122 LAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEE-I 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+ 
Sbjct: 181 DFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L 
Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLF 300

Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD--HL-------IS 344
           +      +    K+I        P NI    I  K+D      EE    H+       +S
Sbjct: 301 MVDGTTTDATDPKDIWPDFVDRLPDNIGITVIRNKADQTG---EEMGICHVNNPTLIRLS 357

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TG G+E L   +K  +            + +RHL  L +  ++L++     E     +
Sbjct: 358 AKTGAGVEALREHLKECMGFSGNS-EGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGE 416

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 417 ILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|254995465|ref|ZP_05277655.1| tRNA modification GTPase TrmE [Anaplasma marginale str.
           Mississippi]
          Length = 411

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 158/414 (38%), Positives = 235/414 (56%), Gaps = 23/414 (5%)

Query: 41  KKPF-PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL 99
           K+P   R A+ +  +    + +D+ +++ FP P SFTGED  E  VHG +AV+  + EEL
Sbjct: 7   KEPVRSRVATCKTLYDKKRQPIDQAVVLYFPGPGSFTGEDVVELQVHGSLAVIRLLFEEL 66

Query: 100 AKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYG 159
             +   R+A PGEFS RAF NGKIDL  AE +ADL++SETE Q R +    SG L  LY 
Sbjct: 67  QTV--FRIAEPGEFSLRAFLNGKIDLTRAEGIADLVNSETEAQLRQAFAQSSGFLERLYE 124

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
           +W   L  I S +EA +DF ++   Q   S  V + +  L N +  H+  G  GE +R+G
Sbjct: 125 EWRSSLVDILSDLEAYIDFPDDVSPQILRS--VHDRVKELHNSLERHLDDGHRGERLRHG 182

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ILG  N GKS+LFN LA++D+AIV++ PGTTRDVL   +D+ GY   + DTAGIRE
Sbjct: 183 MRVAILGKPNVGKSTLFNHLARRDMAIVSEYPGTTRDVLEAHVDIGGYPFIVVDTAGIRE 242

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID------FIFIGTKSDLYS 333
           + D VE+EGI R   E   AD+ ++L   +    +   + I+       I++ +K+D  S
Sbjct: 243 STDFVEREGIMRAKSEAATADIRIMLFPHSEAGNLGVHEAIEGGDDGKTIYVLSKAD--S 300

Query: 334 TYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
               E         +L+S  T  G++ L++ +K    + F K    + + +RH  HL   
Sbjct: 301 AKEGETRIIEGKQFYLVSVHTNLGVDSLLSALKERAIDGFPKSGDVLITSQRHRGHLQSA 360

Query: 387 VRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +   +    +   +I+AE LRLA+  +GK+TG V  + +LD IF +FCIGK
Sbjct: 361 AKVISDIT---DEMPAEIVAEYLRLATKEIGKVTGAVYGDDILDNIFKRFCIGK 411


>gi|332533705|ref|ZP_08409564.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036869|gb|EGI73330.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 454

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 163/454 (35%), Positives = 249/454 (54%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A +T      + IIR+SG     V E +  K  P  R A    F  L G  LD+G
Sbjct: 4   QDTIAAQATAPGRGGVGIIRVSGSLAKSVAEKVVGKI-PKVRYADYVPFKSLAGEQLDQG 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + I F  P SFTGED  E   HGG  V++ +L+E++K+  +RLA PGEFS RAF N K+D
Sbjct: 63  IAIYFAGPNSFTGEDVLELQGHGGPVVLDMLLKEISKIEGVRLAKPGEFSERAFMNDKLD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI++ +E   + +++ + GE S      ++K+ H+R ++EA +DF +EE +
Sbjct: 123 LTQAEAIADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEE-I 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              S  +V  D+  +   +++  +Q K G I+R G ++VI G  NAGKSSL NALA ++ 
Sbjct: 182 DFLSDGKVSGDLDTIITQLNTVTNQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREA 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++G  + I DTAG+RE+ D VE+ GI+R + E+  AD +L 
Sbjct: 242 AIVTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRESPDRVEQIGIERAWDEINQADRVLF 301

Query: 305 L-----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT-----EEYDHL-ISSFT 347
           +            +I  +     P+ +    I  K+DL          ++Y  + +S+  
Sbjct: 302 MLDGTDTIDTDPHKIWPEFMAKLPEGMGVTVIRNKADLSGDIVGMEQEQQYPVISLSAKN 361

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
            +G+E +   +K+ +  +         + +RHL  L     +LE      E     +I+A
Sbjct: 362 ADGIELVREHLKACIGFQ-GATEGGFMARRRHLDALESAAYHLETGKTQLEMHIAGEILA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454


>gi|330952339|gb|EGH52599.1| tRNA modification GTPase TrmE [Pseudomonas syringae Cit 7]
          Length = 456

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 166/461 (36%), Positives = 248/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGRAAEAIIGRTLK-PRFAHYGPFVDDAGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|238650604|ref|YP_002916456.1| tRNA modification GTPase TrmE [Rickettsia peacockii str. Rustic]
 gi|238624702|gb|ACR47408.1| tRNA modification GTPase TrmE [Rickettsia peacockii str. Rustic]
          Length = 445

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 255/456 (55%), Gaps = 33/456 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD----GRIL 61
           ETIFA S+    + +++ R+SGP   +V + +  +K     K+ L Y+  +       ++
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELI 58

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  +++ F SP SFTGED  E H HG  A+   +   L  +  +RLA  GEF++RAF N 
Sbjct: 59  DNVMVVYFKSPGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNN 118

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K DL  AE +ADLI++ET MQ + ++   SG+L +LY  W  +L  I S +EA +DF  +
Sbjct: 119 KFDLTAAEGIADLINAETIMQHKQAIRQASGKLEALYNNWRSQLLKIISLLEAYIDFP-D 177

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+ +    EV N    L N IS +++  + GE++R+G K+ I+G  N GKSSL N L +
Sbjct: 178 EDIPDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQ 237

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300
           +D+AIV++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + AD
Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTAD 297

Query: 301 LILLLKEINSKKEISFPKNIDFIFI--------------GTKSDLYSTYTEEYDHLISSF 346
           + +++ +    +++    N D I +                 S ++S   +     +S  
Sbjct: 298 IKIIMFD---AEKLDSSINEDIINLIDENTIIIINKIDLIEASKIFSIENKYKCLRVSVK 354

Query: 347 TGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
               L  ++  I++I  N   F ++P+   +++RH  +L Q + +L   SL   D  L +
Sbjct: 355 NNIALSSILKNIENIAENMAGFTEIPY--ITNQRHRNYLQQALSHLTAFSL---DNDLVL 409

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E++R+    +G ITG ++VE++L  IF  FCIGK
Sbjct: 410 ATEDIRMTVRCIGAITGVINVEEILGEIFKNFCIGK 445


>gi|207727483|ref|YP_002255877.1| trna modification gtpase trme protein [Ralstonia solanacearum
           MolK2]
 gi|206590720|emb|CAQ56332.1| trna modification gtpase trme protein [Ralstonia solanacearum
           MolK2]
          Length = 491

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 154/459 (33%), Positives = 246/459 (53%), Gaps = 29/459 (6%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A++T      I ++R+SGP    V + +C +    PR+A+   F G DG  +D+G+ +
Sbjct: 36  IAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRLLQ-PRQAAYLPFLGADGHAIDRGIAL 94

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRAFENGKID 124
            FP+P S+TGED  E   HGG  V+  +L    +  +   +R+A PGEF+RRAF N K+D
Sbjct: 95  WFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGREIGVRVAEPGEFTRRAFLNDKMD 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + TE   R +   + G  S      ++++ H+R  +EA LDF EEE +
Sbjct: 155 LAQAEAVADLIEASTEAAARSAARSLDGAFSQAVHALVERVIHLRMLVEATLDFPEEE-I 213

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +    +  ++  +   ++Q + G ++R G  +V+ G  N GKSSL NALA  ++
Sbjct: 214 DFLEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAEL 273

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT+  +  AD++L 
Sbjct: 274 AIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLH 333

Query: 305 L---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHLI 343
           L                 I+++     P  +  + +  K DL    T      +  +  +
Sbjct: 334 LLDAADYRAHGLSAEDAAIDARIAGHVPAGVPTLRVINKIDLSGAATPARVDAQPPEVWL 393

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCG 401
           S+  G G+E L   +  I   +       + + +RHL  L     +L +A+   +++   
Sbjct: 394 SARDGSGIELLRAVLLEIAGWQGGGEGLYL-ARERHLSALRTAKDHLAIAADHADQRAQS 452

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 453 LDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 491


>gi|205371771|sp|Q8Y3H5|MNME_RALSO RecName: Full=tRNA modification GTPase mnmE
          Length = 474

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 154/459 (33%), Positives = 245/459 (53%), Gaps = 29/459 (6%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A++T      I ++R+SGP    V + +C +  P PR+A+   F   DG  +D+G+ +
Sbjct: 19  IAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRLLP-PRQATYLPFLDADGAAIDRGIAL 77

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKID 124
            FP+P S+TGED  E   HGG  V+  +L    +  +   LR+A PGEF+RRAF N K+D
Sbjct: 78  WFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLRAGHGIGLRVAEPGEFTRRAFLNDKLD 137

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + TE   R +   + G  S      ++++ H+R  +EA LDF EEE +
Sbjct: 138 LAQAEAVADLIEASTEAAARSAARSLDGVFSQTVHALVERVIHLRMLVEATLDFPEEE-I 196

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +    +  ++  +   ++Q + G ++R G  +V+ G  N GKSSL NALA  ++
Sbjct: 197 DFLEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAEL 256

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT+  +  AD++L 
Sbjct: 257 AIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLH 316

Query: 305 L---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTY------TEEYDHLI 343
           L                 I+++     P  +  + +  K DL           +  +  +
Sbjct: 317 LLDAADYRAHGLSAEDAAIDARIAEHVPPGVPTLRVINKIDLAGAAVPGRVDAQPPEVWL 376

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCG 401
           S+  G G+E L   +  I   +       + + +RHL  L     +L +A+   +++   
Sbjct: 377 SARDGSGIELLRAALLEIAGWQGGGEGLYL-ARERHLSALRSAREHLTIAADHADQRAQS 435

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 436 LDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 474


>gi|269965284|ref|ZP_06179405.1| tRNA modification GTPase [Vibrio alginolyticus 40B]
 gi|269830085|gb|EEZ84313.1| tRNA modification GTPase [Vibrio alginolyticus 40B]
          Length = 453

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 164/455 (36%), Positives = 246/455 (54%), Gaps = 25/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A +T      + IIR+SGP   QV  E   K  KP  R A    F   DG +LD+G
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKTLKP--RYAEYLPFKSEDGTVLDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+D
Sbjct: 62  IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGIRAARPGEFSERAFLNDKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + G  S      ++ L H+R ++EA +DF EEE +
Sbjct: 122 LAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEE-I 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+ 
Sbjct: 181 DFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L 
Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLF 300

Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISSF 346
           +      +    K+I        P NI    I  K+D  +       H+       +S+ 
Sbjct: 301 MVDGTTTDATDPKDIWPDFVDRLPDNIGITVIRNKAD-QTGEDMGICHVNNPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+E L + +K  +            + +RHL  L +  ++L++     E     +I+
Sbjct: 360 TGAGVEALRDHLKECMGFSGNS-EGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|90415379|ref|ZP_01223313.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2207]
 gi|90332702|gb|EAS47872.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2207]
          Length = 454

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 159/460 (34%), Positives = 256/460 (55%), Gaps = 26/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M +  ++I A++T      + I+R+SGP        I  K    PR+A+  +F G++G +
Sbjct: 1   MQNSLDSIVAIATAPGRGGVGIVRVSGPDISAFTSAITGKTL-LPRQATFSHFNGVNGEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ I FP+P SFTGE   E   HGG  +++ +++   ++   R A PGEFS RAF N
Sbjct: 60  IDEGVAIYFPAPASFTGEHVLELQGHGGPVILDALVQRCVQL-GARPARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G+ S L    +++L +IR ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIDATSIQAARCAVRSLQGDFSRLVNGLVERLINIRLYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLN-DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE   +F + E L+ ++  L+  +++ +SQ + G ++R+G  +V+ G  NAGKSSL NAL
Sbjct: 179 EE--IDFLADERLSLNLQKLREALTNTLSQAQQGSLLRDGMTVVLAGKPNAGKSSLLNAL 236

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A +D AIVT   GTTRDVL   + L+G  + I DTA +R++DD +E EGI+R +LE+E A
Sbjct: 237 AGRDAAIVTPKAGTTRDVLRETITLDGMPLHIVDTARLRDSDDEIELEGIRRAWLEIEQA 296

Query: 300 DLILLLKEINSKKEISFPKNIDFIFI---GTKSDLYSTYT--EEYDH------------L 342
           D +L L + N              F    G K  +       +E  H             
Sbjct: 297 DQLLFLVDANESDNPDLAAIWPEYFARYGGAKQPITVVLNKIDESGHQPGRQVGDANNFA 356

Query: 343 ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           IS+    G+++L+  ++S +  ++  +  FS  + +RHL  L + +  + +        G
Sbjct: 357 ISAKHKTGIDQLVAFLQSSMGFDERSEGVFS--ARRRHLAALEKALELVVVGQRQLSGSG 414

Query: 402 L-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE+LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 415 AGELLAEDLRLAQAHLSEITGVFSSDDLLGHIFSSFCIGK 454


>gi|315128182|ref|YP_004070185.1| tRNA modification GTPase TrmE [Pseudoalteromonas sp. SM9913]
 gi|315016696|gb|ADT70034.1| tRNA modification GTPase TrmE [Pseudoalteromonas sp. SM9913]
          Length = 454

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 166/460 (36%), Positives = 249/460 (54%), Gaps = 33/460 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A +T      + IIR+SG    QV E I  K  P  R A    F  L G  LD+G
Sbjct: 4   QDTIAAQATAPGRGGVGIIRVSGSLAKQVAEKIVGKI-PKVRFADYVPFNNLAGDQLDQG 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + I F  P SFTGED  E   HGG  V++ +L+E++K+  +RLA PGEFS RAF N K+D
Sbjct: 63  IAIYFAGPHSFTGEDVLELQGHGGPVVLDMLLKEISKIDGVRLAKPGEFSERAFMNDKLD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI++ +E   + +++ + G+ S      ++K+ H+R ++EA +DF +EE +
Sbjct: 123 LTQAEAIADLINATSEQAAKSALQSLQGQFSKHIETLVEKVIHLRMYVEAAIDFPDEE-I 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              S  +V  D+  +   +++  +Q K G I+R G ++VI G  NAGKSSL NALA ++ 
Sbjct: 182 DFLSDGKVGGDLNAIIEQLNAVTNQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREA 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++G  + I DTAG+RE+ D VE+ GI+R + E+  AD +L 
Sbjct: 242 AIVTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRESPDRVEQIGIERAWDEINQADRVLF 301

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYT-----EEYDHL-ISSFT 347
           + +     +              P+ +    I  K+DL          ++Y  + +S+  
Sbjct: 302 MLDGTDTADTDPHAIWPEFMAKLPQGMGVTVIRNKADLSGDVVGMDQEQQYPVISLSAKN 361

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL-------YHLSQTVRYLEMASLNEKDC 400
            +G+E +   +K+ +            + +RHL       YHL      LEM    E   
Sbjct: 362 ADGIELVREHLKACIGFD-GATEGGFMARRRHLDALEHAAYHLDTGKTQLEMHVAGE--- 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              I+AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 ---ILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454


>gi|322515697|ref|ZP_08068669.1| tRNA modification GTPase TrmE [Actinobacillus ureae ATCC 25976]
 gi|322118229|gb|EFX90524.1| tRNA modification GTPase TrmE [Actinobacillus ureae ATCC 25976]
          Length = 493

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 166/458 (36%), Positives = 255/458 (55%), Gaps = 29/458 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           K+TI A +T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G
Sbjct: 43  KDTIVAQATPIGRGGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQG 101

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+D
Sbjct: 102 IALFFKAPNSFTGEDVLELQGHGGQMILDILLKRILAVKGVRIARAGEFSEQAFLNDKLD 161

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +
Sbjct: 162 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-I 220

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LNDI+   N +     QG    I+R G K+VI G  NAGKSSL NALA 
Sbjct: 221 DFLADGKIEGHLNDIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAG 277

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT+I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD 
Sbjct: 278 RDAAIVTNIAGTTRDVLCEHIHIDGMPLHIIDTAGLREASDEVERIGIQRAWDEIEQADH 337

Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----IS 344
           +LL+ +   +   +F           P+NI    I  K DL S     +E D      +S
Sbjct: 338 VLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSSEAEGLQELDGFTLIRLS 397

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402
           + T  G++ L   +K  +  +         + +RHL  L     +LE     L +   G 
Sbjct: 398 AQTKVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG- 455

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 456 ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 493


>gi|87122923|ref|ZP_01078788.1| tRNA modification GTPase [Marinomonas sp. MED121]
 gi|86161796|gb|EAQ63096.1| tRNA modification GTPase [Marinomonas sp. MED121]
          Length = 460

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 162/456 (35%), Positives = 250/456 (54%), Gaps = 23/456 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           +K+TI A +T      + IIRLSGP    + E +   K P  R A    F   +G  +D 
Sbjct: 9   DKDTIAAQATPPGRGGVGIIRLSGPLSLSIAEQVLGFK-PTARHAHYGPFKDAEGEQIDL 67

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ I FP+P SFTGED  E   HGG  +++ +L  + ++   RLA PGEFS RAF N K+
Sbjct: 68  GIAIYFPNPNSFTGEDVIELQGHGGPVIIDMLLSRVLEL-GARLARPGEFSERAFLNDKM 126

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI S +    + ++  + G  S    + ++ L H+R ++EA +DF EEE 
Sbjct: 127 DLTQAEAIADLIDSASTQAAKCALRSLQGAFSKRIDELVESLIHLRIYVEAAIDFPEEE- 185

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +      +V ND+  ++ ++ +   + K G IIR G  +VI G  NAGKSSL NAL+ KD
Sbjct: 186 IDFIGDGKVANDLKGIQQNLIAVQKEAKQGAIIREGMNVVIAGRPNAGKSSLLNALSGKD 245

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI+R + E+  AD IL
Sbjct: 246 SAIVTNIEGTTRDVLREQIHIDGMPLHIIDTAGLRDSPDEVEQIGIQRAWQEIHKADRIL 305

Query: 304 LLKEINSKKEISFPKNI------------DFIFIGTKSDLYS--TYTEEYDHL----ISS 345
           L+ +  S    + P +I            +   +  K DL +      + +++    +S+
Sbjct: 306 LMVDSKSSSNETDPAHIWPEFVAQLANQDNLTLVRNKVDLTTEKVGVTQVNNIPVISLSA 365

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DI 404
              +G+E L   +K ++          I + +RH+  L++   +L   SL   D G  ++
Sbjct: 366 KNQDGVELLTQHLKDVMGYDSTTEGGFI-ARRRHIEALNKASEFLNAGSLQLHDFGAGEL 424

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE+L+ A  +L +ITG    + LL  IF  FCIGK
Sbjct: 425 LAEDLKEAQNALSEITGAFTSDDLLGRIFGSFCIGK 460


>gi|190171250|gb|ACE63695.1| ThdF [Escherichia vulneris]
          Length = 439

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 155/435 (35%), Positives = 241/435 (55%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTPLDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   + 
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ND+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 187 QVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +   
Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+D+       ++   H    +S+ TGEG+E L + +K 
Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVEALRSHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +      +     + +RHL  L +  R+LE   A L     G +++AE LRLA  +L +
Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGAWAG-ELLAEELRLAQQNLSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 425 ITGEFTSDDLLGRIF 439


>gi|330813392|ref|YP_004357631.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486487|gb|AEA80892.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 446

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 165/449 (36%), Positives = 259/449 (57%), Gaps = 19/449 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI+A+ST    S I+IIRLSGP+   + + I       PR A L+ F+     I+D+G++
Sbjct: 2   TIYALSTPPGVSGIAIIRLSGPNSLTITKDIIHGTIDKPRMALLKTFYDSKKEIIDEGIV 61

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + +P  +S+TG+D  EFHVHG  AV+N  L EL+   + +LA  GEF+++AF N KI+L 
Sbjct: 62  VWYPKGQSYTGDDLIEFHVHGSKAVINKFLNELSLRSDCQLAEAGEFTKQAFLNNKINLY 121

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           EAES+ADL+++ETE QR  ++   +   S L+ +W +++  +RS  EA +DFSEE+   +
Sbjct: 122 EAESIADLLNAETEGQRIQALRLKNS--SPLFMKWREQILDVRSKCEAAIDFSEEDLPAS 179

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                V   I  +  +I+  +   K+GEI+R G+KI I G  N+GKSS  N LAK+  AI
Sbjct: 180 ILEGNV-QKIKEISQEITVMLDDSKVGEIMREGFKIAIFGPPNSGKSSFLNLLAKRKAAI 238

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL- 305
           V++I GTTRDV+ + L ++ + V +SDTAGIR   + +EK GI     ++  ++L +L+ 
Sbjct: 239 VSEIKGTTRDVIEVQLQIKNFPVVLSDTAGIRAAKNKIEKIGIALALKQITKSNLNILIL 298

Query: 306 ------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY--DHLISSFTGEGL 351
                       K IN K  I   K     F G +  L +   +++   H IS+ T  G 
Sbjct: 299 DGTIKTISNEIKKLINEKTLIIINKQDKKNFDG-RLVLKNIKGKKFLGIHKISTLTKFGY 357

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           ++LI  +K+IL++       ++ S  RH   LS+T ++L+      +   ++  AE L++
Sbjct: 358 KKLIEDLKNILNSLHDHGDDTLISRSRHRTLLSKTSKHLKNYLKISQSAEIEKTAEELKI 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AS  L +I G + VE++L  IF  FC+GK
Sbjct: 418 ASNYLSEIVGFIGVEEVLGRIFKDFCVGK 446


>gi|237801669|ref|ZP_04590130.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331024528|gb|EGI04584.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 456

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 166/461 (36%), Positives = 248/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +    I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLASKTAYAIAGRTLK-PRYAHYGPFSDGTGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLGMLDDVRLELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + + +             P       I  K+DL        T E  H+  S
Sbjct: 298 RILLVVDATAPEAMDPFALWPEFLEQRPDPSKVTLIRNKADLSGDSVGLQTSEDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGLE L   +KS +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKSCMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|190171192|gb|ACE63666.1| ThdF [Enterobacter cloacae]
          Length = 439

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 157/438 (35%), Positives = 244/438 (55%), Gaps = 29/438 (6%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDSDGTPLDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   LN
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           D++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTT
Sbjct: 187 DVM---TDLEAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 243

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +
Sbjct: 244 RDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAV 303

Query: 315 S-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINK 357
                        P  +    +  K+D+       ++   H    +S+ TGEG+++L N 
Sbjct: 304 DPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVDDLRNH 363

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVS 415
           +K  +      +     + +RHL  L +  R+LE   A L     G +++AE LRLA  +
Sbjct: 364 LKQSMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGAWAG-ELLAEELRLAQQN 421

Query: 416 LGKITGCVDVEQLLDIIF 433
           L +ITG    + LL  IF
Sbjct: 422 LSEITGEFTSDDLLGRIF 439


>gi|163751386|ref|ZP_02158611.1| tRNA modification GTPase [Shewanella benthica KT99]
 gi|161328689|gb|EDP99837.1| tRNA modification GTPase [Shewanella benthica KT99]
          Length = 453

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 160/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG    +V   +     P  R A    F   DG ++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDQASEVAMAMLGHI-PKTRYADYCDFKTADGEVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P+SFTGED  E   HGG  V++ +++ + +   +R+A PGEFS +AF N K+DL
Sbjct: 63  ALYFKGPKSFTGEDVLELQGHGGQIVLDMLIKRVMETKGIRIARPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + ++  + GE S+     ++++T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALNSLQGEFSAEVHALVEQVTNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +   + S  +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKISGSLNKIITKLDSVKASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKETA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT++ GTTRDVL   + L+G  + I DTAG+RET D VEK GI+R + E+E AD +L +
Sbjct: 242 IVTEVAGTTRDVLREHIHLDGMPLHIIDTAGLRETVDTVEKIGIERAWAEIETADQVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348
            +  +   +             P  +    +  K+DL       +E++ H    IS+ TG
Sbjct: 302 LDGTTTDAVDPHEIWPDFIDRLPNKLGITVVRNKADLTGESLALSEDHGHPVFPISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G+E L   +KS++  +   L     + +RHL  L     +L +     E     +++AE
Sbjct: 362 LGIEALKQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLMLGKEQLEVYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRMTQLALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|59710609|ref|YP_203385.1| tRNA modification GTPase TrmE [Vibrio fischeri ES114]
 gi|197334085|ref|YP_002154774.1| tRNA modification GTPase TrmE [Vibrio fischeri MJ11]
 gi|81311054|sp|Q5E8Z9|MNME_VIBF1 RecName: Full=tRNA modification GTPase mnmE
 gi|59478710|gb|AAW84497.1| tRNA modification GTPase TrmE [Vibrio fischeri ES114]
 gi|197315575|gb|ACH65022.1| tRNA modification GTPase TrmE [Vibrio fischeri MJ11]
          Length = 455

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 161/458 (35%), Positives = 250/458 (54%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI A +T      + IIR+SGP    V   +  K+   PR A    F   +G  
Sbjct: 1   MTLHTDTIVAQATAPGRGGVGIIRVSGPKAKDVALAVIGKELK-PRYAEYAPFKDENGLE 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP+P SFTGED  E   HGG  V++ +++ + K+  +R A PGEFS RAF N
Sbjct: 60  LDQGIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILKIDGIRTARPGEFSERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + ++  + G  S+     ++ L ++R ++EA +DF E
Sbjct: 120 DKMDLAQAEAIADLIDASSEEAAKSALNSLQGVFSNKINTLVESLIYLRIYVEAAIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+
Sbjct: 180 EE-IDFLADGKVSGDLQGIIDNLNAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALS 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            KD AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+  AD
Sbjct: 239 GKDTAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWDEIAQAD 298

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKS-----DLYSTYTEEYDHL-I 343
            +L + +  +                 PKN+    I  K+     DL   +  +   + +
Sbjct: 299 RVLFMVDGTTTDATDPKLIWPEFLDRLPKNMGMTVIRNKADQTGEDLGICHVNDPTLIRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           S+ TGEG++ L N +K  +     +      + +RHL  L +  ++L++     E     
Sbjct: 359 SAKTGEGVDALRNHLKECMGFSGNQ-EGGFMARRRHLEALEKAAQHLDIGQQQLEGYMAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I+AE LR+A   L +ITG    + LL  IF+ FCIGK
Sbjct: 418 EILAEELRIAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|296134494|ref|YP_003641741.1| tRNA modification GTPase TrmE [Thermincola sp. JR]
 gi|296033072|gb|ADG83840.1| tRNA modification GTPase TrmE [Thermincola potens JR]
          Length = 458

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 174/458 (37%), Positives = 256/458 (55%), Gaps = 25/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LD--GR 59
           +TI A+ T    + I IIR+SG    ++ +  F  K KK      S    +G  +D  G 
Sbjct: 3   DTIAAIGTPIGAAGIGIIRVSGEDAIEIVDRIFRSKNKKNLHEVPSHNIVYGHIVDEKGE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ L+ V  +P+SFT E+  E + HGG   V   LE + K    RLA PGEF++RAF 
Sbjct: 63  VIDEVLVTVMLAPKSFTTENVVEINCHGGTVAVRKTLEAVLK-AGARLAEPGEFAKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AES+ DLI+++T    R+++  + G+LS+       KL  +R+ IEA +DF 
Sbjct: 122 NGRIDLAQAESIMDLINAKTAASLRVAVGQLEGKLSAQIKDIRAKLLELRAHIEAGIDFP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  D+++ S +++    + LK+ I   +     G+I R G K VI+G  N GKSSL NAL
Sbjct: 182 EH-DIEDLSKEQIKVATVELKSRIDKILESADSGKIFREGLKTVIIGKPNVGKSSLLNAL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K+  AIVTDIPGTTRDV+   + + G  +KI DTAGIRET+D+VEK G++R+   +E A
Sbjct: 241 VKEKRAIVTDIPGTTRDVIEEFVSIRGIPLKILDTAGIRETEDVVEKIGVQRSKEALEQA 300

Query: 300 DLILLLKEINSK-----KEI-SFPKNIDFIFIGTKSDLYSTYTEEYDH---------LIS 344
           D  L + ++ S+      EI +F K++  I I  K+DL      +             +S
Sbjct: 301 DFFLFVVDVASEISSEDMEIAAFLKDLSGIIIANKTDLTGGLNRDLQKELGLDVPVVAMS 360

Query: 345 SFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCGL 402
              G+GL+EL  KI  I+ +N+F  +   + S+ RH   L+    YL  +      +  +
Sbjct: 361 LLNGQGLDELEEKIVDIVYNNEFHSVDEILVSNVRHERALTAASEYLTGVLETLANNMPM 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D +  +L  A   LGKITG    E LLD IFS+FCIGK
Sbjct: 421 DCVTIDLNSAWEELGKITGETVGEDLLDQIFSQFCIGK 458


>gi|303256375|ref|ZP_07342389.1| tRNA modification GTPase TrmE [Burkholderiales bacterium 1_1_47]
 gi|331001498|ref|ZP_08325116.1| tRNA modification GTPase TrmE [Parasutterella excrementihominis YIT
           11859]
 gi|302859866|gb|EFL82943.1| tRNA modification GTPase TrmE [Burkholderiales bacterium 1_1_47]
 gi|329568227|gb|EGG50044.1| tRNA modification GTPase TrmE [Parasutterella excrementihominis YIT
           11859]
          Length = 463

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 172/463 (37%), Positives = 263/463 (56%), Gaps = 38/463 (8%)

Query: 8   IFAVSTGALPSAISIIRLSG-----PSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           I A++TG   + + I+R+SG      + FQ   F  K+ KP  R A L       G+ILD
Sbjct: 9   IIAIATGNGNAGVGIVRISGEEEDVKALFQKM-FPGKEIKP--RYAELLPIRDTQGQILD 65

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEFSRRAFE 119
            G++I F +P S+TGE   E  VHGG  ++N I++E+    K   LR A PGEF+ RAF 
Sbjct: 66  TGIVIYFRAPFSYTGESVLELQVHGGRVLLNWIVQEVLIFGKEFGLRQALPGEFTERAFL 125

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGKIDL++AE++ADLI + +    + +   ++GE S+      D L ++R  +EA LDF 
Sbjct: 126 NGKIDLVQAEAVADLIEANSRNAAKAASRSLTGEFSNKVNALNDALINLRVEVEAILDFP 185

Query: 180 EEED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           EEE   +  + S+E L DI   +N + S +   + GEI+R+G ++ ++G +N GKSSL N
Sbjct: 186 EEEIDFLSEYQSQEKLEDI---QNRLESVLDSARQGEILRDGLRVALVGETNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            LA +++AIV+DI GTTRD +  DL + G      DTAGIRET+D +E+ GI+RT  E+ 
Sbjct: 243 YLAGEEIAIVSDIAGTTRDKIQTDLIISGVPFHFVDTAGIRETEDRIEQIGIERTKQEIS 302

Query: 298 NADLILLLKEINSKK-----------EISFPKNIDFIFIGTKSDLYSTYTEEYDHL---- 342
            AD+IL +++I  ++           ++   K++  I +  K DL ST       +    
Sbjct: 303 KADVILEIRDIRDQQNKNKDSMQTALKMIKGKDVPIITVLNKVDLISTPLPNTKDVSRGT 362

Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNE 397
               S+ TG+G++EL +++  +    F +      + +RH+++L      L+ A+  LN 
Sbjct: 363 IIETSAVTGKGMQELKSELLKLAG--FSENQSIYMARERHIHNLLNVKESLKRAASYLNS 420

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               L++ AE LR AS  LG+ITG +  + LL  IFS FCIGK
Sbjct: 421 TSPQLELFAEELRGASDELGEITGKISSDDLLGKIFSGFCIGK 463


>gi|116053718|ref|YP_794045.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122256262|sp|Q02DE1|MNME_PSEAB RecName: Full=tRNA modification GTPase mnmE
 gi|115588939|gb|ABJ14954.1| putative GTPase for tRNA modification and thiophene and furan
           oxidation [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 455

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 165/461 (35%), Positives = 255/461 (55%), Gaps = 27/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    ETI A++T      + I+R+SGP   Q+   +  ++    R A    F    G++
Sbjct: 1   MQAATETIVAIATAQGRGGVGIVRISGPLAGQIAVAVSGRQLK-ARHAHYGPFLDAGGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GL + FP P SFTGED  E   HGG  V++ +++   ++   R A PGEFS RAF N
Sbjct: 60  IDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLEL-GARQARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + GE S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  ++ ++S+   +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+T+D VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS----FPKNID-------FIFIGTKSDLYS---TYTEEYD-HL--- 342
            +LL+ +  + +       +P+ +D          I  K+DL +      E  D H+   
Sbjct: 298 RVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIGLEESADGHVTIT 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLE--MASLNEKD 399
           +S+ TG GLE L   +K+ +   F++   S   + +RHL  L Q  + LE   + L    
Sbjct: 358 LSARTGAGLELLREHLKACMG--FEQTAESGFSARRRHLEALRQAGQALEHGHSQLIHNG 415

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A   LG+ITG    + LL  IFS FCIGK
Sbjct: 416 AG-ELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455


>gi|307825358|ref|ZP_07655577.1| tRNA modification GTPase TrmE [Methylobacter tundripaludum SV96]
 gi|307733533|gb|EFO04391.1| tRNA modification GTPase TrmE [Methylobacter tundripaludum SV96]
          Length = 448

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 170/451 (37%), Positives = 257/451 (56%), Gaps = 25/451 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + IIR+SG    ++ + +  K    PR A    F   DG ++D G+
Sbjct: 7   DTIAAIATPPGNGGVGIIRVSGALVPEIAKHLVNKALT-PRLAQYSSFTDDDGSVIDSGI 65

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +P S+TGED  E   HGG  V++ +L  +  +   RLANPGEF+ RAF N K+DL
Sbjct: 66  ILYFLAPASYTGEDILELQGHGGSVVLDMLLRRVLSL-GARLANPGEFTERAFLNDKLDL 124

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI S TE   R + + M G  S    + +++LT +R ++EA +DF +EE + 
Sbjct: 125 AQAEAVADLIESSTEQSVRSAQKSMQGVFSVQINELVEELTELRIYVEAAIDFVDEE-ID 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +   V N I+ + + I       + G ++R+G  +V+ G  NAGKSSL NALA  + A
Sbjct: 184 FLTDGVVENRIVKILHRIGEIQKTAQQGRLLRDGMTVVLAGKPNAGKSSLLNALAGHEAA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + L+G  + I DTAG+RE+D+ +E+EGI+R   E++NAD ILLL
Sbjct: 244 IVTDIAGTTRDVLKERIQLDGMPLHIIDTAGLRESDNAIEQEGIRRAHEEIKNADKILLL 303

Query: 306 KEINSKKEISFPK------NIDFIF-----IGTKSDLYSTY--TEEYDHLISSFTGEGLE 352
            +    +  S  K      NI  I+     +G K ++  T   T+ Y   +S  TG+G+E
Sbjct: 304 IDAREAETESLLKTLPSGGNITQIYNKIDLLGLKPEIKQTELGTQIY---LSIKTGDGME 360

Query: 353 ELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENL 409
            L   +K   S  F +   ++  + +RH+  L++   ++E A   L     G +++AE+L
Sbjct: 361 LLKQHLKQ--SVGFNEATDNVFIARRRHIEALNKGHEFVESALDQLRGSQAG-ELVAEDL 417

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R A  SL +ITG    + LL  IFS FCIGK
Sbjct: 418 RQAQNSLAEITGKFTSDDLLGKIFSSFCIGK 448


>gi|307246406|ref|ZP_07528481.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255391|ref|ZP_07537200.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259841|ref|ZP_07541558.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306852686|gb|EFM84916.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306861648|gb|EFM93633.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866087|gb|EFM97958.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 452

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 165/458 (36%), Positives = 255/458 (55%), Gaps = 29/458 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           K+TI A +T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G
Sbjct: 2   KDTIVAQATPIGRGGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKEQDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-I 179

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LNDI+   N +     QG    I+R G K+VI G  NAGKSSL NALA 
Sbjct: 180 DFLADGKIEGHLNDIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAG 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVT+I GTTRDVL   + ++G  + I DTAG+RE +D VEK GI+R + E+E AD 
Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVEKIGIQRAWDEIEQADH 296

Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----IS 344
           +LL+ +   +   +F           P+NI    I  K DL       +E D      +S
Sbjct: 297 VLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402
           + T  G++ L   +K  +  +         + +RHL  L     +LE     L +   G 
Sbjct: 357 AQTKVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG- 414

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 415 ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|326423790|ref|NP_759969.2| tRNA modification GTPase TrmE [Vibrio vulnificus CMCP6]
 gi|319999155|gb|AAO09496.2| tRNA modification GTPase TrmE [Vibrio vulnificus CMCP6]
          Length = 462

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 164/454 (36%), Positives = 244/454 (53%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A +T      + IIR+SGP   QV  E   K  K   R A    F   DG  LD+G
Sbjct: 13  DTIVAQATAPGRGGVGIIRVSGPQAAQVALEVTGKTLKA--RYAEYLPFKAQDGSELDQG 70

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+D
Sbjct: 71  IALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTISGVRPARPGEFSERAFLNDKMD 130

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF EEE +
Sbjct: 131 LTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPEEE-I 189

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ KD 
Sbjct: 190 DFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKDS 249

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L 
Sbjct: 250 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIRQADRVLF 309

Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFT 347
           +      +    KEI        P+ I    I  K+D           ++     +S+ T
Sbjct: 310 MVDGTTTDATDPKEIWPDFIDRLPEQIGITVIRNKADQTQESLGICHVSQPTLIRLSAKT 369

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           G+G++ L N +K  +            + +RHL  L +   +L +     E     +I+A
Sbjct: 370 GQGVDALRNHLKECMGFSGNS-EGGFMARRRHLDALQRAAEHLLIGQEQLEGYMAGEILA 428

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 429 EELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 462


>gi|86147167|ref|ZP_01065483.1| tRNA modification GTPase [Vibrio sp. MED222]
 gi|85835051|gb|EAQ53193.1| tRNA modification GTPase [Vibrio sp. MED222]
          Length = 453

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 167/457 (36%), Positives = 248/457 (54%), Gaps = 29/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A +T      + IIR+SGP   QV  E   K  KP  R A    F   +G  LD+G
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPQAAQVALEVTGKVLKP--RYAEYLPFKSHNGTELDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+D
Sbjct: 62  IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILSISGVRAARPGEFSERAFLNDKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + GE S      +D L ++R ++EA +DF EEE +
Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGEFSKRINTLVDSLIYLRIYVEAAIDFPEEE-I 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+ 
Sbjct: 181 DFLADGKVSTDLQAIIDNLEAVRQEANQGSIMREGMKVVIAGRPNAGKSSLLNALSGKES 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+  AD +L 
Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIERAWEEIAQADRVLF 300

Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD--HL-------IS 344
           +      +    K+I        P NI    I  K+D  S   EE    H+       +S
Sbjct: 301 MVDGTTTDATDPKDIWPDFVDRLPNNIGMTVIRNKADQTS---EELGICHVNDPTLIRLS 357

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TG+G++ L + +K  +            + +RHL  L +   +L++     E     +
Sbjct: 358 AKTGQGVDALRSHLKDCMGFAGGH-EGGFMARRRHLDALERASEHLDIGQQQLEGYMAGE 416

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 417 ILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|150863681|ref|XP_001382235.2| hypothetical protein PICST_56161 [Scheffersomyces stipitis CBS
           6054]
 gi|149384937|gb|ABN64206.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 478

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 171/485 (35%), Positives = 266/485 (54%), Gaps = 56/485 (11%)

Query: 5   KETIFAVSTGALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILD 62
           + TI+A+ST    +AI +IR+SGP S +   +    K +P  R AS+R  +    G +LD
Sbjct: 1   QPTIYALSTKLGRAAIGVIRVSGPESKYVFNKLTNTKTQPKHRVASVRKLYSPKSGILLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP------NLRLANPGEFSRR 116
           + L + F SP ++TGED  E H+HGG A++  +L  + ++       N+R A  GEFS R
Sbjct: 61  EALTLFFNSPNTYTGEDLLELHLHGGTAIIKSVLAAIKELHDPKKGINIRYAENGEFSSR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+ DL E E + D+I +ETE QR  S+  ++G    L+ QW   + +  + +   +
Sbjct: 121 AFVNGRFDLTEIEGIRDMIDAETETQRIASLSSLTGNTKELFSQWRVGILNNIALMTTLI 180

Query: 177 DFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           DF E+ D++  +     V  +I  L+ +I  ++ + +  E +  G ++V+LG  NAGKSS
Sbjct: 181 DFGEDHDLEETAQLFDNVEENIKKLEQEIHKYLQKVRSSETLLRGIRMVLLGPPNAGKSS 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRT 292
           L N LA +D AIV+DI GTTRD++ + LD+ GY V I DTAGIR+T+  D +E EG+KR 
Sbjct: 241 LLNLLANEDAAIVSDIAGTTRDIIDVPLDINGYKVVIGDTAGIRDTESADKIEIEGMKRA 300

Query: 293 FLEVENADLIL---------------LLKEINSKKEISFPKNI-----DFI-FIGTKSDL 331
             +  N DLIL               L+  ++S +E++ P  +     D I  +G K +L
Sbjct: 301 IAKSYNCDLILAVLPFETDNKSDLHQLISHLSSLRELNRPVLVVLNKEDLIKNLGEKQEL 360

Query: 332 YSTYTE------EYDHLISSFTGEGLEELINKIKSILSNKFKKL-------PFSIPSHKR 378
              ++E      EY H++S  TG G    IN +KS LS+ F+ +       P  I S  +
Sbjct: 361 LKYFSEKLQISPEYFHVVSCLTGGG----INSLKSALSHTFRAITSSETTDPIIISSRAQ 416

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CVDVEQLLDIIFSK 435
            L        + +  S   +D   D++   E+L+ +   +GKITG  + VE++L ++FS 
Sbjct: 417 DLLENDVLQGFEDFCSWKARD---DVVLATESLKQSVEGIGKITGDAIGVEEILGVVFSS 473

Query: 436 FCIGK 440
           FCIGK
Sbjct: 474 FCIGK 478


>gi|212632921|ref|YP_002309446.1| tRNA modification GTPase TrmE [Shewanella piezotolerans WP3]
 gi|212554405|gb|ACJ26859.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Shewanella piezotolerans WP3]
          Length = 453

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 163/454 (35%), Positives = 250/454 (55%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P  R A    F    G ++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGDLASNVAMAVLGHI-PKTRYADYCDFKDEQGGVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + +   LR+A PGEFS +AF N K+DL
Sbjct: 63  ALYFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMETEGLRIAKPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + ++  + GE S+   + ++++T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALNSLQGEFSTQVHELVEQVTNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +   + +  +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKISGSLNRIITKLDTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VEK GI+R + E++ AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTADTVEKIGIERAWDEIKTADQVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYD---HLISSFTG 348
            +  +   +             PKN+    +  K+DL       TEE     H IS+ TG
Sbjct: 302 VDGTTTNAVDPHEIWPDFIDRLPKNLGVTVVRNKADLTGETLEITEEAGHPVHRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
            G+  L   +KS++  +   L     + +RHL  L     +L++    L     G +++A
Sbjct: 362 LGVPALQQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLDLGREQLEVYQAG-ELLA 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 420 EELRMAQLALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|330937305|gb|EGH41313.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 456

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 166/461 (36%), Positives = 247/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKAAEAIIGRTLK-PRFAHYGPFVDDAGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VLN +   + ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLNMLDDARAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|229593496|ref|YP_002875615.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens SBW25]
 gi|229365362|emb|CAY53749.1| probable tRNA modification GTPase [Pseudomonas fluorescens SBW25]
          Length = 456

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 163/461 (35%), Positives = 248/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  +ETI AV+T      + I+R+SGP        I  ++   PR A    F   D  +
Sbjct: 1   MSAPRETIAAVATAQGRGGVGIVRISGPLASVAANAISGRELK-PRYAHYGPFLDADQSV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS +AF N
Sbjct: 60  LDEGLALYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQL-GCRLARPGEFSEQAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  +++++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLAMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRD+L   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLY----STYTEEYDHLISS 345
            +LL+ +  + + +             P       I  K+DL     +  T    H+  S
Sbjct: 298 RVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKADLTGEAIAMETSADGHVTLS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSAKSAGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASAALEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A   LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|165976918|ref|YP_001652511.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|303251175|ref|ZP_07337358.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303252998|ref|ZP_07339152.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248533|ref|ZP_07530550.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307250764|ref|ZP_07532696.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307253139|ref|ZP_07535019.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307257560|ref|ZP_07539322.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|205829051|sp|B0BR82|MNME_ACTPJ RecName: Full=tRNA modification GTPase mnmE
 gi|165877019|gb|ABY70067.1| tRNA modification GTPase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|302648130|gb|EFL78332.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302649975|gb|EFL80148.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306854956|gb|EFM87142.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306857200|gb|EFM89324.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306859382|gb|EFM91415.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306863936|gb|EFM95857.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 452

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 165/458 (36%), Positives = 254/458 (55%), Gaps = 29/458 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           K+TI A +T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G
Sbjct: 2   KDTIVAQATPIGRGGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-I 179

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LNDI+   N +     QG    I+R G K+VI G  NAGKSSL NALA 
Sbjct: 180 DFLADGKIEGHLNDIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAG 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVT+I GTTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD 
Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADH 296

Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----IS 344
           +LL+ +   +   +F           P+NI    I  K DL       +E D      +S
Sbjct: 297 VLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402
           + T  G++ L   +K  +  +         + +RHL  L     +LE     L +   G 
Sbjct: 357 AQTKVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG- 414

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 415 ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|320157825|ref|YP_004190204.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio vulnificus
           MO6-24/O]
 gi|31340460|sp|Q8DDI1|MNME_VIBVU RecName: Full=tRNA modification GTPase mnmE
 gi|319933137|gb|ADV88001.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio vulnificus
           MO6-24/O]
          Length = 453

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 164/454 (36%), Positives = 244/454 (53%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A +T      + IIR+SGP   QV  E   K  K   R A    F   DG  LD+G
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPQAAQVALEVTGKTLKA--RYAEYLPFKAQDGSELDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+D
Sbjct: 62  IALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTISGVRPARPGEFSERAFLNDKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF EEE +
Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPEEE-I 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ KD 
Sbjct: 181 DFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKDS 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L 
Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIRQADRVLF 300

Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFT 347
           +      +    KEI        P+ I    I  K+D           ++     +S+ T
Sbjct: 301 MVDGTTTDATDPKEIWPDFIDRLPEQIGITVIRNKADQTQESLGICHVSQPTLIRLSAKT 360

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           G+G++ L N +K  +            + +RHL  L +   +L +     E     +I+A
Sbjct: 361 GQGVDALRNHLKECMGFSGNS-EGGFMARRRHLDALQRAAEHLLIGQEQLEGYMAGEILA 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 420 EELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|330890255|gb|EGH22916.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. mori str.
           301020]
          Length = 456

 Score =  252 bits (643), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 166/461 (36%), Positives = 247/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGRAAEAIIGRTLK-PRFAHYGPFVDDAGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPIDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+ R A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDPRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|190171248|gb|ACE63694.1| ThdF [Escherichia vulneris]
          Length = 439

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 154/435 (35%), Positives = 240/435 (55%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V + +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGHKAREVAQAVLGKL-PKPRYADYLPFNDADGTALDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   + 
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 187 GVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +   
Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+DL       +E   H    +S++TGEG++ L N +K 
Sbjct: 307 DIWPDFIARLPAKLPITVVRNKADLTGETLGISEVNGHSLVRLSAYTGEGIDVLRNHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +     ++     + +RHL  L     +L+   A L     G +++AE LRLA  SL +
Sbjct: 367 SMGFD-TQMEGGFLARRRHLQALELAAEHLQQGKAQLLGAWAG-ELLAEELRLAQQSLSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 425 ITGEFTSDDLLGRIF 439


>gi|190171222|gb|ACE63681.1| ThdF [Enterobacter ludwigii]
          Length = 439

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 153/435 (35%), Positives = 241/435 (55%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDTDGTPLDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGMRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   + 
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 187 SVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +   
Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+D+       +E   H    +S+ TGEG+++L N +K 
Sbjct: 307 DIWPDFIARLPAKLPITVVRNKADVTGETLGISEVNGHSLIRLSARTGEGVDDLRNHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +      +     + +RHL  L    R+L+   A L     G +++AE LRLA  +L +
Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEDAARHLDQGKAQLLGAWAG-ELLAEELRLAQQNLSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG +  + LL  IF
Sbjct: 425 ITGEITSDDLLGRIF 439


>gi|262273126|ref|ZP_06050943.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Grimontia hollisae
           CIP 101886]
 gi|262222882|gb|EEY74190.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Grimontia hollisae
           CIP 101886]
          Length = 454

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 163/461 (35%), Positives = 251/461 (54%), Gaps = 28/461 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M H  +TI A +T      + IIR+SGP    V + +  +  P  R+A    F   +G  
Sbjct: 1   MTH-SDTIVAQATPPGRGGVGIIRVSGPKAKAVAKAVTGRDLPV-RRAEYLPFKDAEGNA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F +P SFTGED  E   HGG  +++ +++ + ++  +R A PGEFS RAF N
Sbjct: 59  LDQGIALYFQAPNSFTGEDVLELQGHGGPVIMDMLIKRIVEIDGVRTARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + +++ + G  SS     ++ L H+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAAKSALQSLQGAFSSKVNALVEALIHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           EE +   S  +V   LN+I+   +++    +QG    I+R G K+VI G  NAGKSSL N
Sbjct: 179 EE-IDFLSDGKVAGDLNNIITSLDEVRKAANQGA---IMREGMKVVIAGRPNAGKSSLLN 234

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL+ K+ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+ 
Sbjct: 235 ALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWDEIA 294

Query: 298 NADLILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYD 340
            AD +L +      +  S +EI        P N+    I  K+D+          ++   
Sbjct: 295 QADRVLFMVDGTTTDATSPEEIWPEFIDRLPSNMGMTVIRNKADITGETLGICHASQPTL 354

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
             +S+ TG G++ L   +K+ +            + +RHL  L    R+LE+     E  
Sbjct: 355 IRLSAKTGAGVDALREHLKACMGFS-GAAEGGFMARRRHLEALDAAARHLEIGKDQLEGY 413

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +I+AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 414 MAGEILAEELRIAQQHLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|317401615|gb|EFV82241.1| tRNA modification GTPase mnmE [Achromobacter xylosoxidans C54]
          Length = 450

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 166/439 (37%), Positives = 246/439 (56%), Gaps = 23/439 (5%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            I ++R+SG    ++   + +++   PR A    F  +DG +LD+G+ + F  P S+TGE
Sbjct: 18  GIGVVRVSGADLSELVRRLFQRELT-PRHAHYLPFKAVDGELLDEGIALYFKGPHSYTGE 76

Query: 79  DSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLI 135
           D  E   HGG AV+  +L+      +   LRLA PGEF+RRAF N ++DL +AE++ADLI
Sbjct: 77  DVLELQGHGGPAVLRRVLDSCLAAGRDLGLRLAEPGEFTRRAFLNDRMDLAQAEAVADLI 136

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED--VQNFSSKEVL 193
            + +    R +M  +SG+ S+      D++ H+R  +EA LDF EEE   ++ + ++  L
Sbjct: 137 EASSVAAARGAMASLSGDFSARVNDLSDRIIHLRMLVEATLDFPEEEIDFLEKYQARPTL 196

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
                L  D+   I+Q + G I+R G  +V+ G  N GKSSL NALA  DVAIVT I GT
Sbjct: 197 EK---LAGDLGHLIAQARQGVILREGLHVVLAGQPNVGKSSLLNALAGDDVAIVTPIAGT 253

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK------- 306
           TRD +   + ++G  + I DTAG+RET+D VE  GI R++ E+E AD+IL L+       
Sbjct: 254 TRDKVVQQIHIDGVPLHIVDTAGLRETEDTVESIGIARSWQEIERADVILHLQDATQPGD 313

Query: 307 EINSKKEISFPKNIDFIFIGTKSDLYST-YTEEYDHL-ISSFTGEGLEELINKIKSILS- 363
           E++++     P     + +  K DL ST +      L IS+  G GL+ L  ++  I   
Sbjct: 314 ELDAQITARLPPRTPVLKVFNKVDLLSTAFAAGPGELGISAKRGAGLDALRAELLRIAGW 373

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITG 421
           N   + P+   + +RHL+ L     +L +A+    + D  LD+ AE LRLA  SL  ITG
Sbjct: 374 NPGAESPWL--ARERHLHALQDAADHLALAAEHAEQDDRVLDLFAEELRLAHDSLSSITG 431

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               + LL  IFS FCIGK
Sbjct: 432 KFTSDDLLGEIFSSFCIGK 450


>gi|160901486|ref|YP_001567068.1| tRNA modification GTPase TrmE [Delftia acidovorans SPH-1]
 gi|160367070|gb|ABX38683.1| tRNA modification GTPase TrmE [Delftia acidovorans SPH-1]
          Length = 473

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 166/476 (34%), Positives = 244/476 (51%), Gaps = 40/476 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     +   +C +    PR+A+   F    G  
Sbjct: 2   LPRHNDPIAAIATAPGRGAVGIVRVSGKGVAPLVRALCGRDLK-PREATYLPFRDAQGGP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAK---------MPNLRLA 108
           +D GL + FP+P S+TGED  E   HGG  V+  +L    E A+         +P LRLA
Sbjct: 61  IDHGLALFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQDPREGHRSVLPGLRLA 120

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
            PGEF+ RAF N KIDL +AE++ADLI + TE   R +   +SG  S       D L H+
Sbjct: 121 QPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSEEIHGLRDALVHL 180

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           R  +EA LDF EEE +      +    +  L+  +   +S+   G ++R G K+VI G  
Sbjct: 181 RMLVEATLDFPEEE-IDFLQKADASGQLARLRGKLDQVLSRAHQGALLREGIKVVIAGQP 239

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+RE+ D VE+ G
Sbjct: 240 NAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESSDEVERIG 299

Query: 289 IKRTFLEVENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSD--- 330
           I R + E+  AD +L L ++    E  +               P+ +  I +  K+D   
Sbjct: 300 IARAWDEIAAADAVLFLHDLTRMGEHDYLAADAAIAETLAQKLPRQVPVIDVWNKTDRAE 359

Query: 331 ---LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQT 386
              +      E    +S+ TG+GL+ L  ++  +    ++  P  +  +  RH+  L   
Sbjct: 360 PARMQEHGGREGSVALSARTGDGLDALRRRLLDVAG--WQSAPEGLYLARARHVEALQAV 417

Query: 387 VRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +L+ A L        LD++AE LRLA VSL  ITG    + LL +IFS FCIGK
Sbjct: 418 AAHLQEAELQLAAQAAHLDLLAEELRLAQVSLNSITGEFSSDDLLGVIFSSFCIGK 473


>gi|218708090|ref|YP_002415711.1| tRNA modification GTPase TrmE [Vibrio splendidus LGP32]
 gi|218321109|emb|CAV17059.1| tRNA modification GTPase trmE [Vibrio splendidus LGP32]
          Length = 467

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 168/457 (36%), Positives = 248/457 (54%), Gaps = 29/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A +T      + IIR+SGP   QV  E   K  KP  R A    F   DG  LD+G
Sbjct: 18  DTIVAQATAPGRGGVGIIRVSGPLATQVALEVTGKTLKP--RYAEYLPFKSHDGIELDQG 75

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+D
Sbjct: 76  IALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILAISGVRAARPGEFSERAFLNDKMD 135

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + GE S      +D L ++R ++EA +DF EEE +
Sbjct: 136 LTQAEAIADLIDASSEEAAKSALQSLQGEFSKRINTLVDSLIYLRIYVEAAIDFPEEE-I 194

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+ 
Sbjct: 195 DFLADGKVSADLQAIIDNLEAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 254

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+  AD +L 
Sbjct: 255 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIERAWEEIAQADRVLF 314

Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD--HL-------IS 344
           +      +    K+I        P NI    I  K+D  S   EE    H+       +S
Sbjct: 315 MVDGTTTDATDPKDIWPDFVDRLPDNIGMTVIRNKADQTS---EELGICHVNDPTLIRLS 371

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TG+G++ L + +K  +            + +RHL  L +   +L++     E     +
Sbjct: 372 AKTGQGVDALRSHLKDCMGFAGGH-EGGFMARRRHLDALERASEHLDIGQQQLEGYMAGE 430

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 431 ILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 467


>gi|300313619|ref|YP_003777711.1| tRNA modification (thiophene/furan oxidation) GTPase
           [Herbaspirillum seropedicae SmR1]
 gi|300076404|gb|ADJ65803.1| tRNA modification (thiophene/furan oxidation) GTPase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 479

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 171/471 (36%), Positives = 247/471 (52%), Gaps = 36/471 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M  +   I A++T      I ++RLSG +   V + +C +    PR A+   F   DG  
Sbjct: 14  MTFDSSPIAAIATAPGRGGIGVVRLSGKNLAPVIQAVCGRASLAPRHATYLPFLNEDGSA 73

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRA 117
           +D+GL I FP+P S+TGED  E   HGG  V+  +L    +  +   LRLA PGEF++RA
Sbjct: 74  IDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGEFTQRA 133

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N KIDL +AE++ADLI + TE   + + E +SG  S +  + +D++T +R  +EA LD
Sbjct: 134 FLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLVEATLD 193

Query: 178 FSEEED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           F EEE   ++   ++  L  I     ++  H +QG L   +R+G   V+ G  N GKSSL
Sbjct: 194 FPEEEIDFLKQSDARGQLATIRSTLEEVFKHAAQGAL---LRDGLNAVLAGKPNVGKSSL 250

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI------VEKEGI 289
            N LA  DVAIVT I GTTRD +T  + +EG  + I DTAGIRE  D       VE+ GI
Sbjct: 251 LNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDDGSGPDEVERIGI 310

Query: 290 KRTFLEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDLYSTYTEEYDHL 342
           +RT+ EV  AD+IL + + +    +        FP  +  I I  K D  S +    D +
Sbjct: 311 ERTWAEVAKADVILHMLDADRGPTLEDEKITSRFPDGVPIIRIWNKID-RSGHKAAVDKM 369

Query: 343 -------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL-----SQTVRYL 390
                  +S+  G+G++ L  ++  I   + + +     + +RHL  L            
Sbjct: 370 PDATHVYLSASEGQGVDLLRAELLRIAGWQ-QTVESRYLARERHLLALKAADEHLAHAAA 428

Query: 391 EMASLNEK-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             A  NE  +  LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 429 HAALDNEAGEHALDLFAEELRLAQERLSSITGKFTPDDLLGVIFSRFCIGK 479


>gi|222112656|ref|YP_002554920.1| tRNA modification gtpase trme [Acidovorax ebreus TPSY]
 gi|221732100|gb|ACM34920.1| tRNA modification GTPase TrmE [Acidovorax ebreus TPSY]
          Length = 467

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 163/469 (34%), Positives = 243/469 (51%), Gaps = 32/469 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     + + +C +    PR+A+   F    G+ 
Sbjct: 2   LPRHSDPIVAIATAPGRGAVGIVRVSGKQIGALVQALCGRALK-PREATYLPFRDAAGQA 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK------MPNLRLANPGEFS 114
           +D+GL + FP+P S+TGED  E   HGG  V+  +L    +      +  LRLA PGEF+
Sbjct: 61  IDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAATGGVLDRLRLAEPGEFT 120

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF N KIDL +AE++ADLI + TE   R +   +SG+ S       D L H+R  +EA
Sbjct: 121 ERAFLNNKIDLAQAEAIADLIDASTEAAARGASRSLSGDFSREIHTLRDALVHLRMLVEA 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LDF EEE +      +    +  L+  ++  + +   G ++R G K+VI G  NAGKSS
Sbjct: 181 TLDFPEEE-IDFLRKADARGQLSNLQQSLARVMQRAGQGALLREGIKVVIAGQPNAGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+RE+DD VE+ GI R + 
Sbjct: 240 LLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESDDEVERIGIARAWD 299

Query: 295 EVENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSDLYSTYT--- 336
           E+  AD +L L ++       +               P  +  + +  K+D         
Sbjct: 300 EIAGADAVLFLHDLTRWGSAQYQDDDAAIAHTLSTRLPAGVPVVDVWNKADAAPQAAAPA 359

Query: 337 ---EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EM 392
              E    L+S+ TG+GL+ L  ++  I   +       I +  RH+  L     +L E 
Sbjct: 360 REGESQAVLLSARTGQGLDTLRRQLLQIAGWQSAAEGVYI-ARARHIEALRAVDAHLMEA 418

Query: 393 ASLNEKDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A+  E D   LD++AE LRLA  +L  ITG    + LL +IFS FCIGK
Sbjct: 419 AAQLESDGPALDLLAEELRLAQNALNTITGEFTSDDLLGVIFSSFCIGK 467


>gi|330970320|gb|EGH70386.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 456

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 165/461 (35%), Positives = 249/461 (54%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKAAEAIIGRTLK-PRFAHYGPFVDGTGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGE+  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGENVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL     +  T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPINLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|300176248|emb|CBK23559.2| unnamed protein product [Blastocystis hominis]
          Length = 492

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 159/481 (33%), Positives = 261/481 (54%), Gaps = 57/481 (11%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGR-ILDKGLLI-VFPS 71
           + S +++IR+SG + F   + +  ++   P PR+ASLR       + ++DKGL++  FP 
Sbjct: 13  VKSGVAVIRVSGSNAFDAIKQMTSEQCSFPTPRQASLRSILDSQTKEVIDKGLVMHRFPL 72

Query: 72  PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131
             SFT ED  EFHVHG  AVVN  L  L+ +P  R+A PGEF++RAF NGK+  LE E+L
Sbjct: 73  SLSFTDEDVVEFHVHGSPAVVNATLRSLSHIPYFRVAEPGEFTKRAFLNGKMSFLEVEAL 132

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           ADL+++ETE QR+ ++ G+SGELS+L  +W  +L H  +  E  L+F+++ D ++    +
Sbjct: 133 ADLLNAETETQRQQAIHGLSGELSALCWKWRSQLMHSLAHAETILEFADDMDEESVLLAD 192

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
               +  +++ +   +   +  ++++ G ++ + G  N GKSSL N L   + AIV+ IP
Sbjct: 193 ATRQLGSIRDSMQQLLRGFRRSQLVKEGIRVTLFGPPNVGKSSLLNVLTGSEEAIVSAIP 252

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-------- 303
           GTTRDVL +DLDLEG+ V + DTAG+ +++++VE+EG+ R    V  + + +        
Sbjct: 253 GTTRDVLKVDLDLEGWKVILQDTAGLHDSEEVVEREGMNRARAAVAESSVRMVVVDVARD 312

Query: 304 -------LLKEINSKKEISFPKNI------------------DFIFIGTKSDLYST-YTE 337
                  +++EI  K E      +                  + + +  KSDL S    E
Sbjct: 313 AKENVESMMREIEGKGEAERKGKMGESCLEGKENTKKSQLEGEVLVVLNKSDLVSKEQVE 372

Query: 338 EYDHL-------------ISSFTGEGLEELINKIKSILSNKFKKLP----FSIPSHKRHL 380
           E                 IS    +G+E ++  +K ++     +        + + +R  
Sbjct: 373 EVREFVLNKYPFVQNVLSISCKQKQGIEAVLTALKEVVGRVAHENTEGDHSQLITRERQR 432

Query: 381 YHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439
             L Q +  ++    L+E+D  +D+ AE LR    SL ++TG VDVE++LDI+FS+FCIG
Sbjct: 433 NCLEQCISSIDRCMELSEEDL-VDLEAEELRYCLKSLSRLTGEVDVEEILDIVFSEFCIG 491

Query: 440 K 440
           K
Sbjct: 492 K 492


>gi|269103815|ref|ZP_06156512.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163713|gb|EEZ42209.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 455

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 164/459 (35%), Positives = 244/459 (53%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      + IIR+SGP   +V       ++  PR A    F   DG  
Sbjct: 1   MNQHTDTIVAQATPPGRGGVGIIRVSGPKAKEVA-LAVAGRELRPRYAEYLPFKNEDGTA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F  P SFTGED  E   HGG  +++ ++  +  +  +R A PGEFS RAF N
Sbjct: 60  LDQGIALFFKGPNSFTGEDVLELQGHGGPVLMDMLIRRILTLDGIRPARPGEFSERAFMN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + + + + G  S+   + ++ L ++R ++EA +DF E
Sbjct: 120 DKLDLAQAEAIADLIDASSEEAAKSAFQSLQGAFSTRVNELVESLIYLRMYVEAAIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  +V  D+  + + + +   +   G I+R G K+VI G  NAGKSSL NAL+
Sbjct: 180 EE-IDFLSDGKVSGDLNRIIDRLEAVRKEANQGSIMREGMKVVIAGRPNAGKSSLLNALS 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            KD AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+  AD
Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWDEILQAD 298

Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHL------- 342
            +L +      +    KEI        P+N+    I  K +L         H+       
Sbjct: 299 RVLFMVDGTTTDATDPKEIWPDFIERLPENMGLTVIRNKIELTGEQA-GICHVNNPTLIR 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           +S+ TGEG++ L   +K  +            + +RHL  L +   +LE+  S  E    
Sbjct: 358 LSALTGEGVDSLRQHLKECMGFS-GTTEGGFMARRRHLDALERAAEHLEIGKSQLEGYMA 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +I+AE LRLA   L +ITG    + LL  IF+ FCIGK
Sbjct: 417 GEILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|237747089|ref|ZP_04577569.1| tRNA modification GTPase mnmE [Oxalobacter formigenes HOxBLS]
 gi|229378440|gb|EEO28531.1| tRNA modification GTPase mnmE [Oxalobacter formigenes HOxBLS]
          Length = 462

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 169/465 (36%), Positives = 251/465 (53%), Gaps = 28/465 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFI--CKKKKPF-PRKASLRYFFGL 56
           MN +   I A++T      + I+R+SG +    + EF     K  P  PR A    F   
Sbjct: 1   MNTDSSPIAAIATAPGRGGVGIVRISGKNLEPFISEFFRAASKDLPLKPRYAHFLPFLDA 60

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEF 113
           DG I+D+G+ + F +P SFTGED  E   HGG  V+  +L+   ++ K   LR+A PGEF
Sbjct: 61  DGNIIDEGIALYFKAPHSFTGEDVLELQGHGGPVVLQMVLKRCLQVGKTIQLRIAEPGEF 120

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N +IDL +AE++ADLI + TE   R +   +SG  S         +  +R  +E
Sbjct: 121 TRRAFLNDRIDLAQAEAIADLIDATTEEAVRSASRSLSGVFSKEIRDLASAIIQLRMMVE 180

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           + LDF EE D+     + V   I+ ++  +   ISQ   G ++R G  +V+ G +N GKS
Sbjct: 181 SSLDFPEE-DIDFLKKENVKEKIISIRESLRGIISQAAQGALLREGIHVVLAGQTNVGKS 239

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET--DDIVEKEGIKR 291
           SL N L   D+AIVT + GTTRD +T  + LEG  V + DTAGIR +  +D VE+ GI+R
Sbjct: 240 SLLNVLTGSDIAIVTPVAGTTRDKITETIQLEGIPVTLIDTAGIRPSTAEDEVERIGIER 299

Query: 292 TFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-- 342
            + E+E AD+IL L +        + K    FP NI  I I  K D+ S +    D++  
Sbjct: 300 AWTEIEKADVILHLLDASLGPTRSDEKIAADFPPNIPVIQIWNKIDI-SGHRPSTDNMFG 358

Query: 343 -----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
                +S+ TGEG++ L  ++  I +   +    +  + +RHL  +     +L +A+ + 
Sbjct: 359 ITQVYLSTQTGEGIDLLKTELLKI-AGWVQTGESTYLARERHLTAMKMADTHLAIATEHA 417

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 LD++AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 418 VSGSPSLDLLAEELRLAQDALNSITGEFTSDDLLGLIFSRFCIGK 462


>gi|156972770|ref|YP_001443677.1| tRNA modification GTPase TrmE [Vibrio harveyi ATCC BAA-1116]
 gi|166234831|sp|A7N0X8|MNME_VIBHB RecName: Full=tRNA modification GTPase mnmE
 gi|156524364|gb|ABU69450.1| hypothetical protein VIBHAR_00435 [Vibrio harveyi ATCC BAA-1116]
          Length = 453

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 164/457 (35%), Positives = 247/457 (54%), Gaps = 29/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A +T      + IIR+SGP   QV  E   K  KP  R A    F   DG +LD+G
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKTLKP--RYAEYLPFQAEDGTVLDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+D
Sbjct: 62  IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGVRAARPGEFSERAFLNDKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF EEE +
Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE-I 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+ 
Sbjct: 181 DFLADGKVSGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L 
Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLF 300

Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD--HL-------IS 344
           +      +    K+I        P +I    I  K+D      EE    H+       +S
Sbjct: 301 MVDGTTTDATDPKDIWPDFVDRLPNSIGMTVIRNKADQTG---EEMGICHVNDPTLIRLS 357

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TG G++ L   +K  +            + +RHL  L +  ++L++     E     +
Sbjct: 358 AKTGAGVDALRTHLKECMGFS-GNTEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGE 416

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 417 ILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|190171182|gb|ACE63661.1| ThdF [Enterobacter amnigenus]
          Length = 439

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 155/435 (35%), Positives = 239/435 (54%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTALDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   + 
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 187 TVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +   
Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWHEIEQADRVLFMVDGTTTSAVDPA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+D+        D   H    +S+ TGEG+E+L N +K 
Sbjct: 307 DIWPDFIARLPAKLPITVVRNKADMTGETLGLSDVNGHSLIRLSARTGEGIEDLRNHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +  +   +     + +RHL  L     +L+   A L     G +++AE LRLA  SL +
Sbjct: 367 SMGFE-TNMEGGFLARRRHLQALEAAANHLDQGKAQLLGAWAG-ELLAEELRLAQQSLSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 425 ITGEFTSDDLLGRIF 439


>gi|71735987|ref|YP_277292.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|123634468|sp|Q48BF3|MNME_PSE14 RecName: Full=tRNA modification GTPase mnmE
 gi|71556540|gb|AAZ35751.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320321683|gb|EFW77782.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331115|gb|EFW87086.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881913|gb|EGH16062.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 456

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 165/461 (35%), Positives = 247/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGRAAEAIIGRTLK-PRFAHYGPFVDDAGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDPIDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    G GLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGAGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|170106165|ref|XP_001884294.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164640640|gb|EDR04904.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 527

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 250/468 (53%), Gaps = 37/468 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKKK-----PFPRKAS-LRYF 53
           ++ TI+A+ST    + +++IR+SGP    V   +    CK+K      P P K    R  
Sbjct: 66  QRRTIYALSTPPGKAGVAVIRVSGPEALDVWRRVIQPTCKRKALADYIPTPWKMERCRVV 125

Query: 54  FGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
                 +LD GL + F +P SFT ED  E H+H G A+V  +L  LA +P+ R A PGEF
Sbjct: 126 HPETQEMLDDGLAVYFRAPHSFTTEDVVELHIHSGRAIVASVLGSLALLPSCRPAEPGEF 185

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF  G++DL + E L DLI +ET+ QRR++++     +  ++ +    + +  + IE
Sbjct: 186 TRRAFLGGRLDLTQVEGLKDLIDAETDAQRRIALQAAG--VGEIFDELRKGIINCLAQIE 243

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF E ED++     E       L + +  +++  + GE++R+G ++ I G  NAGKS
Sbjct: 244 ALIDFGEGEDIEEGVYDEARIQGKVLLDTMKLYLNDHRRGELMRSGLRLAIFGPPNAGKS 303

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N L K   AIVT IPGTTRD+L + LD+ G  V ++DTAG+R T+D+VE  G++R  
Sbjct: 304 SLLNFLGKLQAAIVTSIPGTTRDILELSLDIGGLPVIVADTAGLRHTEDVVESIGVERAR 363

Query: 294 LEVENADLILLL--------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
             V+  D+ L +              + I+S +++  P+     F+  KSDL    +   
Sbjct: 364 NAVKATDIALCVLSLPETLDSQSGMKESIHSLRDLISPET---FFLFNKSDLLGQSSRGL 420

Query: 340 -------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
                  D+L+ +            + S+ ++ +      + +  RH  HL    ++LE 
Sbjct: 421 PDPEDLRDNLLGNQHHNSKSGQRAWVASLSTDNWTPSQTPLITRARHRTHLESACQFLE- 479

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A L      + + AE LR A+V++GK+TG +DVE +LD +F  FCIGK
Sbjct: 480 AFLELPPEDVVLAAEELRYAAVAVGKVTGHIDVEDILDAVFRDFCIGK 527


>gi|70733512|ref|YP_263287.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Pf-5]
 gi|123651832|sp|Q4K396|MNME_PSEF5 RecName: Full=tRNA modification GTPase mnmE
 gi|68347811|gb|AAY95417.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Pf-5]
          Length = 456

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 162/461 (35%), Positives = 251/461 (54%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP      + I  ++   PR A    F      +
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRISGPLAGAAAKAISGRELK-PRFAHYGPFLSEQEEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+++ FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIVLYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLEL-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVYNLTEQLIALRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL+ +  +++++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLSMLDAVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRD+L   + ++G  + + DTAG+R+T+D VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTEDQVEKIGVERALKAISEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLY----STYTEEYDHLISS 345
            +LL+ +  + +               P       I  K+DL     +  T +  H+  S
Sbjct: 298 RVLLVVDATAAEAADPFALWPEFLEQRPDPAKVTLIRNKADLTGEPIALETCDDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    G GLE L + +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSAMAAGSGLELLRDHLKACMGYE-QTSESSFSARRRHLEALHYASAALEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  SLG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|153835787|ref|ZP_01988454.1| tRNA modification GTPase TrmE [Vibrio harveyi HY01]
 gi|148867486|gb|EDL66856.1| tRNA modification GTPase TrmE [Vibrio harveyi HY01]
          Length = 453

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 164/457 (35%), Positives = 247/457 (54%), Gaps = 29/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A +T      + IIR+SGP   QV  E   K  KP  R A    F   DG +LD+G
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKTLKP--RYAEYLPFQAEDGTVLDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+D
Sbjct: 62  VALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGVRAARPGEFSERAFLNDKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF EEE +
Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE-I 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+ 
Sbjct: 181 DFLADGKVSGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L 
Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLF 300

Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD--HL-------IS 344
           +      +    K+I        P +I    I  K+D      EE    H+       +S
Sbjct: 301 MVDGTTTDATDPKDIWPDFVDRLPNSIGMTVIRNKADQTG---EEMGICHVNDPTLIRLS 357

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TG G++ L   +K  +            + +RHL  L +  ++L++     E     +
Sbjct: 358 AKTGAGVDALRTHLKECMGFS-GNTEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGE 416

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 417 ILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|269962685|ref|ZP_06177030.1| tRNA modification GTPase [Vibrio harveyi 1DA3]
 gi|269832608|gb|EEZ86722.1| tRNA modification GTPase [Vibrio harveyi 1DA3]
          Length = 453

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 163/455 (35%), Positives = 251/455 (55%), Gaps = 25/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A +T      + IIR+SGP   QV  E   K  KP  R A    F   DG +LD+G
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKTLKP--RYAEYLPFQAEDGTVLDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+D
Sbjct: 62  IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGVRAARPGEFSERAFLNDKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF EEE +
Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE-I 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+ 
Sbjct: 181 DFLADGKVSGDLQTIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L 
Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLF 300

Query: 305 LKEINSKKEISFPKNI--DFI-----FIG----------TKSDLYSTYTEEYDHL-ISSF 346
           + +  +  + + PK+I  DF+      IG          T  D+   +  +   + +S+ 
Sbjct: 301 MVD-GTTTDATDPKDIWPDFVDRLPNSIGMTVIRNKADQTGEDMGICHVNDPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G++ L   +K  +            + +RHL  L +  ++L++     E     +I+
Sbjct: 360 TGAGVDALRTHLKECMGFS-GNTEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|148245045|ref|YP_001219739.1| tRNA modification GTPase TrmE [Candidatus Vesicomyosocius okutanii
           HA]
 gi|166234830|sp|A5CVJ3|MNME_VESOH RecName: Full=tRNA modification GTPase mnmE
 gi|146326872|dbj|BAF62015.1| tRNA modification GTPase [Candidatus Vesicomyosocius okutanii HA]
          Length = 447

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 168/454 (37%), Positives = 253/454 (55%), Gaps = 21/454 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK---PFPRKASLRYFFGLD 57
           MN  K TI A+++      I I+R+SGP    +C+ I KK     P PR A    FF  +
Sbjct: 1   MNSSKTTICALASSVGKGGIGIVRVSGP----LCKVIAKKMLGFIPKPRYAYYGLFFDQE 56

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +DKG+ + FP P SFTGED  EF  HGG+  +  +LE    M   +LA  GEFS+R+
Sbjct: 57  STEIDKGIALFFPKPYSFTGEDVLEFQGHGGMIGMRLLLESAISM-GAKLAESGEFSKRS 115

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL++AE+++D+I++ ++   + +   +SG+ S+        +  +R F+EA +D
Sbjct: 116 FLNGKMDLVQAEAISDMINANSKRASKSAFRSLSGDFSNQINGLTKSIIELRVFVEATID 175

Query: 178 FSEEE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           FS+EE D   F   +V   I  +K  I + +     G I+R G  + I G  NAGKSSL 
Sbjct: 176 FSDEEIDFLQFD--QVKCKIKDIKQTIETILKSATQGIILREGLNVAIAGKPNAGKSSLL 233

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL ++  AIVTDI GTTRDVL   + + G  + I DTAG+R + D +EKEGIKR   E+
Sbjct: 234 NALTQESSAIVTDIAGTTRDVLKETIHVNGVPLSIIDTAGLRNSHDKIEKEGIKRANFEI 293

Query: 297 ENADLILLLKEI-NSKKEIS-FPKNID---FIFIGTKSDLYSTYT--EEYDHLISSFTGE 349
           E+AD++L++ +  + K ++S  PKNI+    + I  K DL S     E  + ++      
Sbjct: 294 EHADVVLMVFDAQDDKPDLSILPKNINDQSLLLIKNKVDLTSGAIKREVINDIVQLSVSA 353

Query: 350 GLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
              E I  ++  LSN       S   + + +RH+  L  ++  +  A +  +   ++++A
Sbjct: 354 KYSEGIKLLRKELSNISGLEDLSEGVVLARRRHIIALEASLVSIGNAIMQLEIGAIELMA 413

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+LR A   +G ITG    + LLD IFS FCIGK
Sbjct: 414 EDLRFAGQFMGSITGEFSSDDLLDEIFSSFCIGK 447


>gi|169635760|emb|CAQ16333.1| t-RNA modification GTPase protein [Halomonas cupida]
          Length = 458

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 162/463 (34%), Positives = 250/463 (53%), Gaps = 28/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   ETI AV+T   P  + I+R+SGP    +      +++  PR A    F+G +  +
Sbjct: 1   MSVAAETIAAVATAQGPGGVGIVRISGP-LASIAAKAFSERELKPRYAHYGPFYGENREV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCIQL-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL +ALA
Sbjct: 179 EE-IDFLADGHVLGMLDTVRQELSTVMREAGQGALLRDGMTVVIAGRPNAGKSSLLDALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISS 345
            +LL+ +  + +               P       I  K+DL          +  H+  S
Sbjct: 298 RVLLVVDATAPEADDPFALWPEFLQQRPDPAKVTLIRNKADLTGEDIRLQVCDDGHVTIS 357

Query: 346 FT------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397
            +      G+GLE L + +K+ +  + +    S  + +RHL  L      LE   A L  
Sbjct: 358 LSARSTDAGDGLELLRDHLKACMGYE-QTSESSFSARRRHLEALRHASDALEHGRAQLTL 416

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              G +++AE+LR A  SLG+ITG    + LL  IFS FCIGK
Sbjct: 417 AGAG-ELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 458


>gi|54307239|ref|YP_128259.1| tRNA modification GTPase TrmE [Photobacterium profundum SS9]
 gi|81828901|sp|Q6LW56|MNME_PHOPR RecName: Full=tRNA modification GTPase mnmE
 gi|46911659|emb|CAG18457.1| Putative thiophene and furan oxidation protein ThdF [Photobacterium
           profundum SS9]
          Length = 455

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 166/460 (36%), Positives = 250/460 (54%), Gaps = 25/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      + IIR+SGP   +V   +  ++    R A    F   DG  
Sbjct: 1   MNEYTDTIVAQATPPGRGGVGIIRVSGPKAKEVALAVAGRELK-TRYAEYLPFKNEDGSA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F  P SFTGED  E   HGG  +++ ++  + K+  +R A PGEFS RAF N
Sbjct: 60  LDQGIALFFKGPNSFTGEDVLELQGHGGPVLMDMMIRRILKLEGIRPARPGEFSERAFMN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + +   + G  S+   + ++ + H+R ++EA +DF E
Sbjct: 120 DKLDLAQAEAIADLIDASSEEAAKSAFRSLQGAFSTKVNELVEAVIHLRIYVEAAIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  +V ND+  + +++ +   +   G IIR G K+VI G  NAGKSSL NAL+
Sbjct: 180 EE-IDFLSDGKVSNDLHGIIDNLEAVRREANQGSIIREGMKVVIAGRPNAGKSSLLNALS 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            KD AIVTDI GTTRDVL   + ++G  + I DTAG+RE  + VE+ GI+R + E++ AD
Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASNEVERIGIERAWEEIQQAD 298

Query: 301 LILLLKEINSKKEISFPKNI--DFI----------FIGTKSDLYSTYTEEYDHL------ 342
            +L + +  +  +   PK+I  DFI           I  K +L +       H+      
Sbjct: 299 RVLFMVDGTTTNDTD-PKDIWPDFIERLPESMGLTVIRNKVEL-TGEAAGICHVNNPPLI 356

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
            +S+ TGEG++ L   +K  +            + +RHL  L Q  ++LE+     E   
Sbjct: 357 RLSARTGEGIDSLREHLKDCMGFS-GTTEGGFMARRRHLEALEQAAQHLEIGKEQLEGFM 415

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +I+AE LRLA   L +ITG    + LL  IF+ FCIGK
Sbjct: 416 AGEILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|330976397|gb|EGH76454.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 456

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 166/461 (36%), Positives = 248/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKAAEAIIGRTLK-PRFAHYGPFVDDAGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEAISAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|330812748|ref|YP_004357210.1| tRNA modification GTPase, TrmE [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380856|gb|AEA72206.1| putative tRNA modification GTPase, TrmE [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 456

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 165/462 (35%), Positives = 252/462 (54%), Gaps = 28/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  +ETI AV+T      + I+R+SGP      + I  ++   PR A    FF  D ++
Sbjct: 1   MSAPRETIAAVATAQGRGGVGIVRISGPLASVAAKAISGRELK-PRFAHYGPFFSDDQQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGLALYFPGPNSFTGEDVLELQGHGGPVVLDMLLKRCLEL-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLIGLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL+ +  +++++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLSMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRD+L   + ++G  + + DTAG+R+T+D VEK G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTEDQVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTY----TEEYDHLIS 344
            +LL+ +  + +            E+  P       I  K+DL             H+  
Sbjct: 298 RVLLVVDATAPEADDPFALWPEFLEVR-PDPAKVTLIRNKADLTGEAIVLEVSNDGHVTI 356

Query: 345 SFT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEK 398
           S +    GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L   
Sbjct: 357 SLSAKAAGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASAALEHGRAQLTLA 415

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             G +++AE+LR A  SLG+ITG    + LL  IFS FCIGK
Sbjct: 416 GAG-ELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|83950775|ref|ZP_00959508.1| tRNA modification GTPase [Roseovarius nubinhibens ISM]
 gi|83838674|gb|EAP77970.1| tRNA modification GTPase [Roseovarius nubinhibens ISM]
          Length = 391

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 153/405 (37%), Positives = 224/405 (55%), Gaps = 22/405 (5%)

Query: 43  PFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102
           P  R  S+R     D  +LD+ L++ F +  SFTGE++ EF VHG +A++  +L  L +M
Sbjct: 2   PARRVGSVRLLRQGD-EVLDEALILTFDAGHSFTGEETVEFQVHGSVAIIGALLARLGEM 60

Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162
           P LR A PGEF+RRA EN ++DL + E LADL+ SETE QRR +M+  SG L      W 
Sbjct: 61  PGLRQAEPGEFTRRALENERLDLAQIEGLADLLESETEAQRRQAMKMFSGALGQKAEGWR 120

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
            KL    + +E  +DF++EE V      EV+  +  +  ++   I+     E IR G+++
Sbjct: 121 GKLIRAMALLEVTIDFADEE-VPEDVYPEVIAVLDGVMAELRVEITGVAAAERIRTGFEV 179

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  N GKS+L N LA +D AI +D+ GTTRDV+ + +D+ G  V   DTAG+RET+D
Sbjct: 180 AIVGAPNVGKSTLLNGLAGRDAAITSDVAGTTRDVIEVRMDVAGLPVTFLDTAGLRETED 239

Query: 283 IVEKEGIKRTFLEVENADL-ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           +VE  GI R       ADL + LL + +   E++   +   I +  K+D+          
Sbjct: 240 VVESVGIARAKERAAQADLRVFLLDDPSQGAELAEEGD---ILLQAKADVAGGSFPG--- 293

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            +S  TG G+ ELI  I   LS++       + +H RH   L +    LE A    +D  
Sbjct: 294 -VSGKTGAGIAELITAISERLSSRVAH--AGVATHLRHKRALQEGCDALEQA----RDLM 346

Query: 402 L------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L      +I+AE +R A  +L  + G VDVE +LD +FS FC+GK
Sbjct: 347 LQNVEMSEIVAEEIRRAVYALDSLVGRVDVEAILDEVFSSFCLGK 391


>gi|190171242|gb|ACE63691.1| ThdF [Enterobacter sp. OD1121_04]
          Length = 439

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/435 (35%), Positives = 240/435 (55%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDTDGTPLDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   + 
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 187 SVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +   
Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+D+       +E   H    +S+ TGEG+++L N +K 
Sbjct: 307 DIWPDFIARLPAKLPITVVRNKADVTGETLGISEVNGHSLIRLSARTGEGVDDLRNHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +      +     + +RHL  L    R+L+   A L     G +++AE LRLA  +L +
Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEDAARHLDQGKAQLLGAWAG-ELLAEELRLAQQNLSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 425 ITGEFTSDDLLGRIF 439


>gi|77361917|ref|YP_341492.1| tRNA modification GTPase TrmE [Pseudoalteromonas haloplanktis
           TAC125]
 gi|123589159|sp|Q3IK56|MNME_PSEHT RecName: Full=tRNA modification GTPase mnmE
 gi|76876828|emb|CAI88050.1| enzyme adding cmnm(5) to tRNA-s(2)U34, forming (with subsequent
           MnmG action) cmnm(5)s(2)U34-tRNA, an intermediate in
           mnm(5)s(2)U34-tRNA synthesis [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 454

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 166/460 (36%), Positives = 248/460 (53%), Gaps = 33/460 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A +T      + IIR+SG     V E +  K  P  R A    F  L G  LD+G
Sbjct: 4   QDTIAAQATAPGRGGVGIIRVSGSLAKSVAEKVVGKI-PKVRYADYVPFKSLAGEQLDQG 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + I F  P SFTGED  E   HGG  V++ +L+E++K+  +RLA PGEFS RAF N K+D
Sbjct: 63  IAIYFAGPNSFTGEDVLELQGHGGPVVLDMLLKEISKIEGVRLAKPGEFSERAFMNDKLD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI++ +E   + +++ + GE S      ++K+ H+R ++EA +DF +EE +
Sbjct: 123 LTQAEAIADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEE-I 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              S  +V  D+  +   +++   Q K G I+R G ++VI G  NAGKSSL NALA ++ 
Sbjct: 182 DFLSDGKVSGDLDAIIAQLNTVTDQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREA 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++G  + I DTAG+RE+ D+VE+ GI+R + E+  AD +L 
Sbjct: 242 AIVTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRESPDLVEQIGIERAWDEINQADRVLF 301

Query: 305 L-----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT-----EEYDHL-ISSFT 347
           +            +I  +     P  +    I  K+DL          ++Y  + +S+  
Sbjct: 302 MLDGTDTIDTDPHKIWPEFMAKLPVGLGVTVIRNKADLSGDVVGMDQNQQYPVISLSAKN 361

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL-------YHLSQTVRYLEMASLNEKDC 400
            +G+E +   +K+ +            + +RHL       YHL      LEM    E   
Sbjct: 362 ADGIELVREHLKACIGFD-GATEGGFMARRRHLDALEHAAYHLDTGKAQLEMHIAGE--- 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              I+AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 ---ILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454


>gi|254225543|ref|ZP_04919152.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V51]
 gi|125621863|gb|EAZ50188.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V51]
          Length = 449

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 242/437 (55%), Gaps = 21/437 (4%)

Query: 22  IIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSA 81
           IIR+SGP    V + +  +    PR A    F   DG+ LD+G+ + FP+P SFTGED  
Sbjct: 16  IIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGIALFFPNPHSFTGEDVL 74

Query: 82  EFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141
           E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL +AE++ADLI + +E 
Sbjct: 75  ELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQAEAIADLIDASSEQ 134

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
             + +++ + GE S      ++ L H+R ++EA +DF EEE +   +  +V  D+  + +
Sbjct: 135 AAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-IDFLADGKVSADLQTIID 193

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           ++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ AIVTDI GTTRDVL   
Sbjct: 194 NLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREH 253

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEI-- 314
           + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +      E    ++I  
Sbjct: 254 IHIDGMPLHIIDTAGLRDASDTVEKIGIERAWEEIRQADRVLFMVDGTTTEATDPQDIWP 313

Query: 315 ----SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSN 364
                 P+NI    I  K+D     L   +  +   + +S+ TG+G++ L   +K  +  
Sbjct: 314 DFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTGQGVDALRQHLKECMGF 373

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCV 423
              +      + +RHL  L +   +L +     E     +I+AE LR+A   L +ITG  
Sbjct: 374 SGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAEELRIAQQHLNEITGEF 432

Query: 424 DVEQLLDIIFSKFCIGK 440
             + LL  IFS FCIGK
Sbjct: 433 SSDDLLGRIFSSFCIGK 449


>gi|261856983|ref|YP_003264266.1| tRNA modification GTPase TrmE [Halothiobacillus neapolitanus c2]
 gi|261837452|gb|ACX97219.1| tRNA modification GTPase TrmE [Halothiobacillus neapolitanus c2]
          Length = 448

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 167/453 (36%), Positives = 256/453 (56%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TI A++T      + IIRLSG     + E I     P      + +     G +
Sbjct: 1   MHSPHDTIAAIATAPGRGGVGIIRLSGTQAHAIAERIVSTLPPIRYARHVPFKHPNTGAL 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GL +VF +P S+TGED  E   HGG  V++ +L+ L      RLA PGEF+ RAF N
Sbjct: 61  IDDGLCLVFSAPHSYTGEDVVELQGHGGPVVLDHLLK-LILQQGARLARPGEFTERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ADLI + ++   + + + + G  S    +   +L  +R FIE+ LDF E
Sbjct: 120 GRMDLAQAEAVADLIDAGSQAAAQAASQALQGVFSERVHRVTQQLIALRMFIESALDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S   ++     L ++I+  +S+ + G ++R G ++ I+G  NAGKSSL N LA
Sbjct: 180 EE-IDFLSDARLITQSQQLVDEIAELLSETQQGVLLREGMRVAIVGQPNAGKSSLLNQLA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTDIPGTTRDVL  ++ ++G  V I DTAG+RE+D+ +E+EGI+R + EVE AD
Sbjct: 239 GDDRAIVTDIPGTTRDVLRAEIQIDGLPVHIIDTAGLRESDEPIEREGIRRAWREVEQAD 298

Query: 301 LILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLY---STYTEEYDHL-ISSFTGE 349
            +L L++        + K     P+    I++  K DL    + + +E  HL IS+ TG 
Sbjct: 299 AVLFLQDDHRNNPDEDEKIRAMLPRK-HTIWVFNKIDLSGRPAGFDQEKIHLGISAKTGA 357

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL--SQTVRYLEMASLNEKDCGLDIIAE 407
           G++EL   +K I+  +  +    I + +RHL  L  +Q       ++L  +  G ++ AE
Sbjct: 358 GIKELRAHLKEIMGYQSTEGGQFI-ARRRHLDALLGAQKEIISAHSALTTQSAG-ELAAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LR A ++L +ITG    + LL  IFS FCIGK
Sbjct: 416 SLRRAQLALDEITGKFTADDLLGEIFSNFCIGK 448


>gi|164685874|ref|ZP_01947569.2| tRNA modification GTPase TrmE [Coxiella burnetii 'MSU Goat Q177']
 gi|165922497|ref|ZP_02219668.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 334]
 gi|164601391|gb|EAX31811.2| tRNA modification GTPase TrmE [Coxiella burnetii 'MSU Goat Q177']
 gi|165916702|gb|EDR35306.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 334]
          Length = 452

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 175/463 (37%), Positives = 258/463 (55%), Gaps = 45/463 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFGLDGRILDK 63
           ETI A +T +    I ++R+SG     + + I  C    P PR A+   F    G ++D+
Sbjct: 7   ETIAAQATPSGRGGIGVVRVSGEKTKAIAQKILGCV---PKPRYATFVKFRD-SGSVIDE 62

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E H HGG  V++ +L  + K    R A PGEFS RAF N KI
Sbjct: 63  GIALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKA-GARQARPGEFSERAFLNNKI 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI++ +E   R +M  + GE S    Q +D L  +R +IEA +DF EEE 
Sbjct: 122 DLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEEI 181

Query: 184 --VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   KE L ++     +I     QG L   +R G  +VI G  N GKSSL N L+ 
Sbjct: 182 DFLADERIKETLENLTHQVQEIEKTAKQGAL---LREGITVVIAGEPNVGKSSLLNLLSG 238

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRD++   + ++G  + + DTAG+R T+D+VEKEG++RT   V+ ADL
Sbjct: 239 QETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLTEDVVEKEGVRRTQKAVQQADL 298

Query: 302 ILLLKEINS-----KKEIS--FPKN---IDFIFIGTKSDLYSTY----TEEYDHL-ISSF 346
           +LL+ + +      KK I+  F +N   I  + I  K DL         +EY H+ +S  
Sbjct: 299 LLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIIENKIDLIGEAPRKENKEYPHIKLSVK 358

Query: 347 TGEGLEELINKIKSILS------NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNE 397
           T  G+E L N +K+         N F        + +RH   +++   +L+ A+   LN+
Sbjct: 359 TRAGVELLKNHLKNTAGFEATHENNF-------IARRRHCDAIARASAFLKNANNHLLNQ 411

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           K    +++AE+L+LA  +L +ITG    + LL  IFS+FCIGK
Sbjct: 412 KAG--ELVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 452


>gi|330447275|ref|ZP_08310925.1| tRNA modification GTPase TrmE [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491466|dbj|GAA05422.1| tRNA modification GTPase TrmE [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 455

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 169/461 (36%), Positives = 247/461 (53%), Gaps = 27/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      + IIR+SGP   +V   +  ++    R A    F   DG  
Sbjct: 1   MNQHIDTIVAQATPPGRGGVGIIRVSGPKAKEVALAVAGRELK-TRYAEYLPFKNEDGIA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F  P SFTGED  E   HGG  +++ ++  + K+  +R A PGEFS RAF N
Sbjct: 60  LDQGIALFFKGPNSFTGEDVLELQGHGGPVLMDMMIRRILKIDGIRAARPGEFSERAFMN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + + + + G  S+     ++ L H+R ++EA +DF E
Sbjct: 120 DKLDLAQAEAIADLIDASSEEAAKSAFKSLQGAFSTKVNDLVEALIHLRIYVEAAIDFPE 179

Query: 181 EEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           EE +   S  +V   LN I+   ND+    +QG    I+R G K+VI G  NAGKSSL N
Sbjct: 180 EE-IDFLSDGKVSGDLNGIIERLNDVRKEANQGA---IMREGMKVVIAGRPNAGKSSLLN 235

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL+ KD AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E
Sbjct: 236 ALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWDEIE 295

Query: 298 NADLILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYT----EEYDHL 342
           +AD +L +      +    KEI        P ++    I  K++L    T         L
Sbjct: 296 HADRVLFMVDSTTTDATDPKEIWPDFIERLPADMGLTVIRNKAELTGEQTGICHANNPTL 355

Query: 343 I--SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
           I  S+ TG+G++ L   +K  +            + +RHL  L +   +L++     E  
Sbjct: 356 IRLSARTGDGVDALREHLKQCMGFS-GTTEGGFMARRRHLDALERAAEHLDIGKEQLEGF 414

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +I+AE LRLA   L +ITG    + LL  IF+ FCIGK
Sbjct: 415 MAGEILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|92115430|ref|YP_575358.1| tRNA modification GTPase TrmE [Chromohalobacter salexigens DSM
           3043]
 gi|122419006|sp|Q1QS99|MNME_CHRSD RecName: Full=tRNA modification GTPase mnmE
 gi|91798520|gb|ABE60659.1| tRNA modification GTPase trmE [Chromohalobacter salexigens DSM
           3043]
          Length = 458

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 163/459 (35%), Positives = 247/459 (53%), Gaps = 28/459 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + ++TI A++T      + IIRLSGP+   + E I     P PR A    F+  D ++LD
Sbjct: 7   YRQDTIAAIATPPGRGGVGIIRLSGPASRDLAERILGHC-PAPRHAHYGPFYDADAQVLD 65

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L     +   RLA PGEFS RAF N K
Sbjct: 66  EGIALFFPGPHSFTGEDVLELQGHGGPVIMDLLLARCVAL-GARLARPGEFSERAFLNDK 124

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +      ++  + GE S+     +DKL  +R F+EA +DF EEE
Sbjct: 125 LDLAQAEAIADLIDASSRAAAENALRSLQGEFSTRVSALVDKLIELRMFVEAAIDFPEEE 184

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +  +V   +   +  +    +    G ++R G  +VI G  NAGKSSL NAL ++
Sbjct: 185 -IDFLADGKVAAMLQGAQETLGEVRAAAGQGALMREGMNVVIAGRPNAGKSSLLNALTER 243

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVTDI GTTRDVL   + ++G  + + DTAG+R+T D +EK G+ R + E+E AD +
Sbjct: 244 DSAIVTDIEGTTRDVLREYIHIDGMPLHVIDTAGLRDTPDAIEKIGVARAWEEIEKADRV 303

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYDH-------LIS 344
           LLL +  +  +              P       +  K D  S  TE+ D         +S
Sbjct: 304 LLLVDATTTTQTDPMQLWPEFVARLPHPERLTLVRNKID-ESGETEQSDLSTSPPIVRLS 362

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCG 401
           + TG G++ L   +K+++  +   +  FS  + +RHL  L +    L+  +A L     G
Sbjct: 363 AKTGLGVDNLKEHLKAVMGFDATTEGRFS--ARRRHLDALDRAGDALDNGIAQLRGHGAG 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LR A  +L +ITG    + LL  IF  FCIGK
Sbjct: 421 -ELLAEDLRDAQQALSEITGEFTADDLLGEIFGSFCIGK 458


>gi|299068431|emb|CBJ39655.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Ralstonia solanacearum CMR15]
          Length = 481

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/459 (33%), Positives = 245/459 (53%), Gaps = 29/459 (6%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A++T      I ++R+SGP    V + +C +    PR+A+   F   DG  +D+G+ +
Sbjct: 26  IAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRLLQ-PRQATYLPFLDADGAAIDRGIAL 84

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKID 124
            FP+P S+TGED  E   HGG  V+  +L    +  +   LR+A PGEF+RRAF N K+D
Sbjct: 85  WFPAPHSYTGEDVFELQGHGGPVVMQLLLSRCLRAGHGIGLRVAEPGEFTRRAFLNDKLD 144

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + TE   R +   + G  S      ++++ H+R  +EA LDF EEE +
Sbjct: 145 LAQAEAVADLIEASTEAAARSAARSLDGVFSQTVHALVERVIHLRVLVEATLDFPEEE-I 203

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +    +  ++  +   ++Q + G ++R G  +V+ G  N GKSSL NALA  ++
Sbjct: 204 DFLEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAEL 263

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT+  +  AD++L 
Sbjct: 264 AIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLH 323

Query: 305 L---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY------DHLI 343
           L                 I+++     P  +  + +  K DL  T   +       +  +
Sbjct: 324 LLDAADYRAHGLSAEDATIDARIAEHVPSGVPTLRVINKIDLAGTAAPDRVDAQPPEVWL 383

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCG 401
           S+  G G+E L   +  I   +       + + +RHL  L     +L +A+   +++   
Sbjct: 384 SARDGSGIELLRAALLEIAGWQGGGEGLYL-ARERHLSALRTAREHLAIAADHADQRAQS 442

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 443 LDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 481


>gi|190171168|gb|ACE63654.1| ThdF [Citrobacter freundii]
          Length = 439

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/435 (35%), Positives = 242/435 (55%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSTLDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   + 
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 187 NVISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +   
Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+D+       +E   H    +S+ TGEG++ L N +K 
Sbjct: 307 DIWPDFIARLPAKLPITVVRNKADITGETLGLSEVNGHSLVRLSARTGEGVDVLRNHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +  +   +     + +RHL  L++   +LE   A L     G +++AE LRLA  +L +
Sbjct: 367 SMGFE-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG-ELLAEELRLAQQNLSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 425 ITGEFTSDDLLGRIF 439


>gi|168187283|ref|ZP_02621918.1| tRNA modification GTPase TrmE [Clostridium botulinum C str. Eklund]
 gi|169294804|gb|EDS76937.1| tRNA modification GTPase TrmE [Clostridium botulinum C str. Eklund]
          Length = 459

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 179/462 (38%), Positives = 265/462 (57%), Gaps = 28/462 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDG 58
            E +TI A++T    S +SIIR+SG     +   I   K        R  S+RY F +D 
Sbjct: 2   KEFDTIAAIATNLGESGVSIIRVSGDKALSIVSSIFSGKNDRKLDDIRTYSMRYGFIIDK 61

Query: 59  RI---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
                LD+ ++     P SFT ED  E + HGG+ V   ILEE+ K    RLA+PGEF++
Sbjct: 62  DTKEKLDEVIVSYMKGPRSFTAEDVVEINCHGGVVVTKRILEEVVK-AGARLASPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLIS++TE+  + ++E   G+LS   G+  +KL  I + IEA 
Sbjct: 121 RAFLNGRIDLSQAEAVIDLISAKTELSAKSALEQSEGKLSREIGKIRNKLLEIIASIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E+ D++  +S++    +  L ++I S ++    G+I+R G   VI+G  N GKSSL
Sbjct: 181 VDYPED-DLEEVTSEKGRESVSKLVDEIDSLLAHADEGKILREGLNTVIVGKPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  +  AIVTD+PGTTRDV+   + +EG  +KI DTAGIR+TDD+VEK G++++  +
Sbjct: 240 LNALLMETRAIVTDVPGTTRDVIEEYMSIEGIPIKIVDTAGIRDTDDVVEKIGVEKSREK 299

Query: 296 VENADLILLLKE-----INSKKE-ISFPKNIDFIFIGTKSDLYSTYTEE--------YDH 341
           + ++DL +L+ +      N  KE I+F K+  +I +  K DL S   +E        Y  
Sbjct: 300 INSSDLTVLVLDNSRSLDNEDKEIINFIKDKKYIVLLNKVDLESKIDKEALKELNSKYII 359

Query: 342 LISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EK 398
            IS+ TG GL++    IK +  S K       I ++ RH   L +    LE AS N  E 
Sbjct: 360 EISAKTGSGLDKFKEVIKELFFSGKVTSKDVMI-TNTRHKEALIRAKDSLE-ASKNALED 417

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D+ + +LR A  SLG+I G    E ++D IFSKFC+GK
Sbjct: 418 TFAIDLASIDLRNAWKSLGEINGDTVEEDIIDKIFSKFCLGK 459


>gi|212217715|ref|YP_002304502.1| tRNA modification GTPase TrmE [Coxiella burnetii CbuK_Q154]
 gi|212011977|gb|ACJ19357.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Coxiella burnetii CbuK_Q154]
          Length = 473

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 175/463 (37%), Positives = 258/463 (55%), Gaps = 45/463 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFGLDGRILDK 63
           ETI A +T +    I ++R+SG     + + I  C    P PR A+   F    G ++D+
Sbjct: 28  ETIAAQATPSGRGGIGVVRVSGEKTKAIAQKILGCV---PKPRYATFVKFRD-SGSVIDE 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E H HGG  V++ +L  + K    R A PGEFS RAF N KI
Sbjct: 84  GIALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKA-GARQARPGEFSERAFLNNKI 142

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI++ +E   R +M  + GE S    Q +D L  +R +IEA +DF EEE 
Sbjct: 143 DLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEEI 202

Query: 184 --VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   KE L ++     +I     QG L   +R G  +VI G  N GKSSL N L+ 
Sbjct: 203 DFLADERIKETLENLTHQVQEIEKTAKQGAL---LREGITVVIAGEPNVGKSSLLNLLSG 259

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRD++   + ++G  + + DTAG+R T+D+VEKEG++RT   V+ ADL
Sbjct: 260 QETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLTEDVVEKEGVRRTQKAVQQADL 319

Query: 302 ILLLKEINS-----KKEIS--FPKN---IDFIFIGTKSDLYSTY----TEEYDHL-ISSF 346
           +LL+ + +      KK I+  F +N   I  + I  K DL         +EY H+ +S  
Sbjct: 320 LLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIIENKIDLIGEAPRKENKEYPHIKLSVK 379

Query: 347 TGEGLEELINKIKSILS------NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNE 397
           T  G+E L N +K+         N F        + +RH   +++   +L+ A+   LN+
Sbjct: 380 TRAGVELLKNHLKNTAGFEATHENNFI-------ARRRHCDAIARASAFLKNANNHLLNQ 432

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           K    +++AE+L+LA  +L +ITG    + LL  IFS+FCIGK
Sbjct: 433 K--AGELVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 473


>gi|84394513|ref|ZP_00993223.1| tRNA modification GTPase [Vibrio splendidus 12B01]
 gi|84374866|gb|EAP91803.1| tRNA modification GTPase [Vibrio splendidus 12B01]
          Length = 453

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 167/457 (36%), Positives = 248/457 (54%), Gaps = 29/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A +T      + IIR+SGP   QV  E   K  KP  R A    F   DG  LD+G
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPLATQVALEVTGKTLKP--RYAEYLPFKSDDGIELDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+D
Sbjct: 62  IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILAISGVRAARPGEFSERAFLNDKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + GE S      +D L ++R ++EA +DF EEE +
Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGEFSKRINTLVDSLIYLRIYVEAAIDFPEEE-I 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+ 
Sbjct: 181 DFLADGKVSTDLQAIIDNLEAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L 
Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWEEIAQADRVLF 300

Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD--HL-------IS 344
           +      +    K+I        P NI    I  K+D  S   EE    H+       +S
Sbjct: 301 MVDGTTTDATDPKDIWPDFVDRLPDNIGMTVIRNKADQTS---EELGICHVNDPTLIRLS 357

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TG+G++ L + +K  +            + +RHL  L +   +L++     E     +
Sbjct: 358 AKTGQGVDALRSHLKDCMGFAGGH-EGGFMARRRHLDALERASEHLDIGQQQLEGYMAGE 416

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 417 ILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|157964906|ref|YP_001499730.1| tRNA modification GTPase TrmE [Rickettsia massiliae MTU5]
 gi|166991114|sp|A8F2P7|MNME_RICM5 RecName: Full=tRNA modification GTPase mnmE
 gi|157844682|gb|ABV85183.1| tRNA modification GTPase TrmE [Rickettsia massiliae MTU5]
          Length = 445

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 252/456 (55%), Gaps = 33/456 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD----GRIL 61
           ETIFA S+    + +++ R+SGP   +V + +  +K     K+ L Y+  +       ++
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELI 58

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  +++ F SP SFTGED  E H HG  A+   +   L  +  +RLA  GEF++RAF N 
Sbjct: 59  DNVMVVYFKSPGSFTGEDVVEIHTHGSKAISIILTNALLNIAGIRLAEAGEFTKRAFLNN 118

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K DL  AE +ADLI++ET MQ + ++   +G+L  LY  W  +L  I S +EA +DF  +
Sbjct: 119 KFDLTAAEGIADLINAETIMQHKQAIRQANGKLEELYNNWRSQLLKIISLLEAYIDFP-D 177

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+ +    EV N    L N IS +++  + GE++R+G K+ I+G  N GKSSL N L +
Sbjct: 178 EDIPDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQ 237

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVENAD 300
           +D+AIV++I GTTRD++   LD+ GY + + DTAGI  E+ DI+E+EGIKR     + AD
Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIGEESSDIIEQEGIKRAINSAKTAD 297

Query: 301 LILLL-------KEIN-------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           + +++         IN        +  I+    ID I     S ++S   +     +S  
Sbjct: 298 IKIIMFDAEKLDSSINEDIINLIDENTITIINKIDLI---EASKIFSIENKYKCLRVSVK 354

Query: 347 TGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
               L  ++  I++I  N   F + P+   +++RH  +L Q + +L   SL   D  L +
Sbjct: 355 NNIALSSILKNIENIAENMAGFTETPY--ITNQRHRNYLQQALSHLTAFSL---DNDLVL 409

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E++R+ +  +G I G ++VE++L  IF  FCIGK
Sbjct: 410 ATEDIRMTARCIGAIMGVINVEEILGEIFKNFCIGK 445


>gi|209693636|ref|YP_002261564.1| tRNA modification GTPase TrmE [Aliivibrio salmonicida LFI1238]
 gi|208007587|emb|CAQ77687.1| probable tRNA modification GTPase [Aliivibrio salmonicida LFI1238]
          Length = 455

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 163/459 (35%), Positives = 249/459 (54%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGR 59
           M    +TI A +T      + IIR+SGP   QV  E + K  KP  R A    F   +G 
Sbjct: 1   MTLHTDTIVAQATAPGRGGVGIIRVSGPKAQQVALEVVGKTLKP--RYAEYTPFKDDNGL 58

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+G+ + FP+P SFTGED  E   HGG  V++ +++ + K+  +R A PGEFS RAF 
Sbjct: 59  ELDQGIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILKIEGIRTARPGEFSERAFL 118

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N K+DL +AE++ADLI + +E   + ++  + G  S      ++ L ++R ++EA +DF 
Sbjct: 119 NDKMDLAQAEAIADLIDASSEEAAKSALNSLQGVFSRKINTLVESLIYLRIYVEAAIDFP 178

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EEE +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL
Sbjct: 179 EEE-IDFLADGKVSGDLQGIIDNLNAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNAL 237

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           + KD AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+  A
Sbjct: 238 SGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIAQA 297

Query: 300 DLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSD-----LYSTYTEEYDHL- 342
           D +L + +  +                 PKN+    I  K+D     L   +  +   + 
Sbjct: 298 DRVLFMVDGTTTDATDPKVIWPEFLDRLPKNMGMTVIRNKADQTGENLGICHVNDPTLIR 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
           +S+ TGEG++ L   +K  +     +      + +RHL  L +   +L++     E    
Sbjct: 358 LSAKTGEGVDALRLHLKECMGFSGNQ-EGGFMARRRHLEALEKASEHLDIGQQQLEGYMA 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +I+AE LR+A   L +ITG    + LL  IF+ FCIGK
Sbjct: 417 GEILAEELRIAQQHLSEITGEFSSDDLLGRIFTSFCIGK 455


>gi|161830089|ref|YP_001597738.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 331]
 gi|14195264|sp|P94612|MNME_COXBU RecName: Full=tRNA modification GTPase mnmE
 gi|189036199|sp|A9KBS9|MNME_COXBN RecName: Full=tRNA modification GTPase mnmE
 gi|189036200|sp|A9NBA7|MNME_COXBR RecName: Full=tRNA modification GTPase mnmE
 gi|1780759|emb|CAA71458.1| unnamed protein product [Coxiella burnetii]
 gi|161761956|gb|ABX77598.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 331]
          Length = 452

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 174/463 (37%), Positives = 258/463 (55%), Gaps = 45/463 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFGLDGRILDK 63
           ETI A +T +    I ++R+SG     + + I  C    P PR A+   F    G ++D+
Sbjct: 7   ETIAAQATPSGRGGIGVVRVSGEKTKAIAQKILGCV---PKPRYATFVKFRD-SGSVIDE 62

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E H HGG  V++ +L  + K    R A PGEFS RAF N KI
Sbjct: 63  GIALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKA-GARQARPGEFSERAFLNNKI 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI++ +E   R +M  + GE S    Q +D L  +R +IEA +DF EEE 
Sbjct: 122 DLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEEI 181

Query: 184 --VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   KE L ++     +I     QG L   +R G  +VI G  N GKSSL N L+ 
Sbjct: 182 DFLADERIKETLENLTHQVQEIEKTAKQGAL---LREGITVVIAGEPNVGKSSLLNLLSG 238

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRD++   + ++G  + + DTAG+R T+D+VEKEG++RT   V+ ADL
Sbjct: 239 QETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLTEDVVEKEGVRRTQKAVQQADL 298

Query: 302 ILLLKEINS-----KKEIS--FPKN---IDFIFIGTKSDLYSTY----TEEYDHL-ISSF 346
           +LL+ + +      KK I+  F +N   I  + +  K DL         +EY H+ +S  
Sbjct: 299 LLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIVENKIDLIGEAPRKENKEYPHIKLSVK 358

Query: 347 TGEGLEELINKIKSILS------NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNE 397
           T  G+E L N +K+         N F        + +RH   +++   +L+ A+   LN+
Sbjct: 359 TRAGVELLKNHLKNTAGFEATHENNF-------IARRRHCDAIARASAFLKNANNHLLNQ 411

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           K    +++AE+L+LA  +L +ITG    + LL  IFS+FCIGK
Sbjct: 412 KAG--ELVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 452


>gi|170718319|ref|YP_001785331.1| tRNA modification GTPase TrmE [Haemophilus somnus 2336]
 gi|205829154|sp|B0URU2|MNME_HAES2 RecName: Full=tRNA modification GTPase mnmE
 gi|168826448|gb|ACA31819.1| tRNA modification GTPase TrmE [Haemophilus somnus 2336]
          Length = 452

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 256/454 (56%), Gaps = 22/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A +T      + I+R+SGP   QV E +  K    PR A+   F   DG +LD+G
Sbjct: 3   RDTIVAQATPIGRGGVGILRVSGPLAQQVAEQVLGKTLT-PRMANYLPFKDSDGSVLDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGE+  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 62  IALYFKAPNSFTGENVLELQGHGGQIVMDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF +EE +
Sbjct: 122 LAQAEAIADLIEASSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE-I 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   ++   ++ K G I+R G K+VI G  NAGKSSL N LA ++ 
Sbjct: 181 DFLADGKIETHLREIIAKLAKVKNEAKQGAILREGMKVVIAGRPNAGKSSLLNTLAGREA 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+E AD ILL
Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVEKIGIRRAWDEIEQADRILL 300

Query: 305 LKE----------INSKKEISFPKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTG 348
           + +          + S+     P +I    +  K+DL   +    E + L    +S+ T 
Sbjct: 301 ILDSTENQVELDLVRSEFMAKLPPHIPLTIVRNKADLSGEAEVLNEQNGLTVISLSAKTQ 360

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIA 406
           +G++ L   +K  +  +         + +RHL  L Q   +L+  +  L E   G +++A
Sbjct: 361 KGVDLLRQHLKQSMGYQVCT-EGGFLARRRHLEALEQADIHLQAGLIQLTEFYAG-ELVA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 419 EELRIVQHHLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|260771040|ref|ZP_05879968.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio furnissii CIP
           102972]
 gi|260613929|gb|EEX39120.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio furnissii CIP
           102972]
 gi|315178633|gb|ADT85547.1| tRNA modification GTPase trmE [Vibrio furnissii NCTC 11218]
          Length = 453

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 248/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP   +V   +  +    PR A    F    G  LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPKATEVALAVTGRTLK-PRYAEYLPFKTESGVELDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ +++ +  +P +R A PGEFS RAF N K+DL
Sbjct: 63  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILMIPGVRPARPGEFSERAFLNDKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 TQAEAIADLIDASSEEAAKSALKSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVSGDLQAIIDNLNAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIERAWDEIAQADRVLFM 301

Query: 306 KEINSKKEISFPKNI--DFIFIGTKSDLYSTYTEEYDHL----------------ISSFT 347
            +  +    + PK+I  DF+     S   +    + D                  +S+ T
Sbjct: 302 VD-GTTTSATDPKDIWPDFVDRLPDSMGMTVIRNKVDQTGETLGICHVNQPTLIRLSAKT 360

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           GEG++ L + +K+ +     +      + +RHL  L +   +L +     E     +I+A
Sbjct: 361 GEGVDALRSHLKACMGFTGNQ-EGGFMARRRHLDALERAAEHLSIGQQQLEGYMAGEILA 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 420 EELRLAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|29655207|ref|NP_820899.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 493]
 gi|209363710|ref|YP_001423624.2| tRNA modification GTPase TrmE [Coxiella burnetii Dugway 5J108-111]
 gi|29542479|gb|AAO91413.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Coxiella burnetii RSA 493]
 gi|207081643|gb|ABS78334.2| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Coxiella burnetii Dugway 5J108-111]
          Length = 473

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 174/463 (37%), Positives = 258/463 (55%), Gaps = 45/463 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFGLDGRILDK 63
           ETI A +T +    I ++R+SG     + + I  C    P PR A+   F    G ++D+
Sbjct: 28  ETIAAQATPSGRGGIGVVRVSGEKTKAIAQKILGCV---PKPRYATFVKFRD-SGSVIDE 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E H HGG  V++ +L  + K    R A PGEFS RAF N KI
Sbjct: 84  GIALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKA-GARQARPGEFSERAFLNNKI 142

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI++ +E   R +M  + GE S    Q +D L  +R +IEA +DF EEE 
Sbjct: 143 DLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEEI 202

Query: 184 --VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   KE L ++     +I     QG L   +R G  +VI G  N GKSSL N L+ 
Sbjct: 203 DFLADERIKETLENLTHQVQEIEKTAKQGAL---LREGITVVIAGEPNVGKSSLLNLLSG 259

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRD++   + ++G  + + DTAG+R T+D+VEKEG++RT   V+ ADL
Sbjct: 260 QETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLTEDVVEKEGVRRTQKAVQQADL 319

Query: 302 ILLLKEINS-----KKEIS--FPKN---IDFIFIGTKSDLYSTY----TEEYDHL-ISSF 346
           +LL+ + +      KK I+  F +N   I  + +  K DL         +EY H+ +S  
Sbjct: 320 LLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIVENKIDLIGEAPRKENKEYPHIKLSVK 379

Query: 347 TGEGLEELINKIKSILS------NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNE 397
           T  G+E L N +K+         N F        + +RH   +++   +L+ A+   LN+
Sbjct: 380 TRAGVELLKNHLKNTAGFEATHENNFI-------ARRRHCDAIARASAFLKNANNHLLNQ 432

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           K    +++AE+L+LA  +L +ITG    + LL  IFS+FCIGK
Sbjct: 433 K--AGELVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 473


>gi|26986750|ref|NP_742175.1| tRNA modification GTPase TrmE [Pseudomonas putida KT2440]
 gi|148550508|ref|YP_001270610.1| tRNA modification GTPase TrmE [Pseudomonas putida F1]
 gi|60415983|sp|P0A175|MNME_PSEPK RecName: Full=tRNA modification GTPase mnmE
 gi|60415984|sp|P0A176|MNME_PSEPU RecName: Full=tRNA modification GTPase mnmE
 gi|166234811|sp|A5WBB6|MNME_PSEP1 RecName: Full=tRNA modification GTPase mnmE
 gi|24981340|gb|AAN65639.1|AE016190_5 tRNA modification GTPase [Pseudomonas putida KT2440]
 gi|45710|emb|CAA44418.1| unnamed protein product [Pseudomonas putida]
 gi|148514566|gb|ABQ81426.1| tRNA modification GTPase trmE [Pseudomonas putida F1]
 gi|313496414|gb|ADR57780.1| MnmE [Pseudomonas putida BIRD-1]
          Length = 456

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 164/462 (35%), Positives = 251/462 (54%), Gaps = 28/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+RLSGP   +    I  +    PR A    F   +G +
Sbjct: 1   MNTVRETIAAIATAQGRGGVGIVRLSGPLAAKAGLLITGRTLT-PRHAHYGPFRDDEGLV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQV-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + GE S       + L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSRRVHSLTEALIALRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL+ +  +++++S+   +   G ++R+G  +VI G  NAGKSSL N LA
Sbjct: 179 EE-IDFLADGHVLSMLDAVRSELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSLLNQLA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRD+L   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYT--EEYD--HLISS 345
            +LL+ +  + +               P       I  K+DL       E+ D  H+  +
Sbjct: 298 RVLLVVDSTAPEASDPFALWPEFLAQRPDPAKVTLIRNKADLSGERVALEQCDDGHVTIT 357

Query: 346 FTGE----GLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEK 398
            + +    GL+ L + +K  +   +  +  FS  + +RHL  L Q   +LE   A L   
Sbjct: 358 LSAKGDDTGLQLLRDHLKGCMGYEQTAESGFS--ARRRHLDALRQASEHLEHGRAQLTLA 415

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 416 GAG-ELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|304413431|ref|ZP_07394904.1| putative GTPase [Candidatus Regiella insecticola LSR1]
 gi|304284274|gb|EFL92667.1| putative GTPase [Candidatus Regiella insecticola LSR1]
          Length = 457

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 170/459 (37%), Positives = 253/459 (55%), Gaps = 25/459 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-I 60
           N E +TI A +T      + I+R+SG     V + I  K  P PR A    F+  D   I
Sbjct: 4   NKENDTIVAQATPPGRGGVGILRISGALASAVAQAILNKLPP-PRYAHYLKFYDEDSNSI 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP--NLRLANPGEFSRRAF 118
           LD+G+ + F  P SFTGED  E   HGG  V++ +L+ +  +P   LR+A PGEF  RAF
Sbjct: 63  LDQGIALYFQGPHSFTGEDILELQGHGGPIVLDLLLKRILALPLPGLRIARPGEFLERAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            N KIDL +AE++ADLI++ +E   R ++  + G  S     +   L  +R+++EA +DF
Sbjct: 123 LNNKIDLTQAEAVADLINANSEQAARSAVNSLQGVFSDRIKAFSQNLIDLRAYVEAAMDF 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           SEEE +   S  ++   +  + N++    +    G ++R G K+VI G  NAGKSSL NA
Sbjct: 183 SEEE-INFLSDGKIEGQLNNIINELKKVQAAAHQGSLLREGMKVVIAGRPNAGKSSLLNA 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA K+ AIVT + GTTRDVL   + ++G  + I DTAG+RET +I+EK GI+R + E+EN
Sbjct: 242 LAGKESAIVTAVAGTTRDVLREYIHIDGMPLHIIDTAGLRETSEIIEKIGIERAWHEIEN 301

Query: 299 ADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYS-----TYTEEYDHL-IS 344
           AD +L + + +S +            P  +  I +  K D+       T  + Y  + +S
Sbjct: 302 ADSLLFIVDSSSTEATLPDPELIARLPTTLPIIVVRNKIDMTDEQCGLTEVKGYPVIRLS 361

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401
           + TG+G+E L   +K   S  F + P     + +RHL  L + +++L      L     G
Sbjct: 362 AKTGQGIENLQQYLKK--SMGFTQHPEGHFLARRRHLDALEKALKHLNNGHEQLVIMQAG 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 420 -ELLAEELRLAQSALEEITGEFSSDDLLGEIFSNFCIGK 457


>gi|56477029|ref|YP_158618.1| tRNA modification GTPase TrmE [Aromatoleum aromaticum EbN1]
 gi|81821140|sp|Q5P4P5|MNME_AZOSE RecName: Full=tRNA modification GTPase mnmE
 gi|56313072|emb|CAI07717.1| Thiophene and furan oxidation protein ThdF [Aromatoleum aromaticum
           EbN1]
          Length = 451

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 154/449 (34%), Positives = 248/449 (55%), Gaps = 21/449 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           + I A++T      I ++R+SG +       +  ++ P PR A+  +F    G+ +D+G+
Sbjct: 10  DIIAALATAPGRGGIGVVRVSGAALAPFARALTGRE-PKPRHAAFTHFVDAVGKPIDEGI 68

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+ FP+P SFTGED  E   HGG  V+  +L    ++   RLA PGEFSRRAF NGK+DL
Sbjct: 69  LLYFPAPHSFTGEDVIELQGHGGPVVLQLVLARCLEL-GARLAEPGEFSRRAFLNGKMDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + T +  R ++  +SG  S    +  D L  +R  +EA LDF +E DV+
Sbjct: 128 AQAEAVADLIEASTVVAARSAVRSLSGVFSDEMHRLTDALIDLRMLVEATLDFPDE-DVE 186

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              +   L  +  ++  +   + + + G ++R+G  +V++G  N GKSSL N LA  + A
Sbjct: 187 FLENARALERLDAIRVKLERVLERARQGALLRSGMNVVLVGQPNVGKSSLLNCLAGDERA 246

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRD +   + +EG  + + DTAG+RET D VE+ G++RT+ E+  AD+IL +
Sbjct: 247 IVTDIAGTTRDAVRETIAIEGIPIHVIDTAGLRETADPVERLGVERTWREIARADVILRI 306

Query: 306 KEI-------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLE 352
            +        +   + + P+ ++ I I  K DL         H       +S+    G++
Sbjct: 307 VDARVGPQPGDDAIDAALPEGVERITIFNKIDLCGLEPARLQHDDGVVIQLSAQLALGVD 366

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDIIAENLRL 411
            L +++  + +         + + +RHL  L   + ++  A      CG L++ AE LRL
Sbjct: 367 LLRSELLRV-AGWHAHGDDVVLARERHLVALRDALTHVVAA---RSQCGALELFAEELRL 422

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A + +G+ITG    + LL +IFS+FCIGK
Sbjct: 423 AQIRIGEITGEFSSDDLLGVIFSRFCIGK 451


>gi|83747145|ref|ZP_00944188.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Ralstonia solanacearum UW551]
 gi|83726120|gb|EAP73255.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Ralstonia solanacearum UW551]
          Length = 491

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 153/459 (33%), Positives = 245/459 (53%), Gaps = 29/459 (6%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A++T      I ++R+SGP    V + +C +    PR+A+   F   DG  +D+G+ +
Sbjct: 36  IAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRLLQ-PRQAAYLPFLDADGHAIDRGIAL 94

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRAFENGKID 124
            FP+P S+TGED  E   HGG  V+  +L    +  +   +R+A PGEF+RRAF N K+D
Sbjct: 95  WFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGREIGVRVAEPGEFTRRAFLNDKMD 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + TE   R +   + G  S      ++++ H+R  +EA LDF EEE +
Sbjct: 155 LAQAEAVADLIEASTEAAARSAARSLDGAFSQAVHALVERVIHLRMLVEATLDFPEEE-I 213

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +    +  ++  +   ++Q + G ++R G  +V+ G  N GKSSL NALA  ++
Sbjct: 214 DFLEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAEL 273

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT+  +  AD++L 
Sbjct: 274 AIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLH 333

Query: 305 L---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHLI 343
           L                 I+++     P  +  + +  K DL    T      +  +  +
Sbjct: 334 LLDAADYRAHGLSAEDAAIDARIAGHVPAGVPTLRVINKIDLSGAATPARVDAQPPEVWL 393

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCG 401
           S+  G G+E L   +  I   +       + + +RHL  L     +L +A+   +++   
Sbjct: 394 SARDGSGIELLRAVLLEIAGWQGGGEGLYL-ARERHLSALRTAKDHLAIAADHADQRAQS 452

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 453 LDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 491


>gi|90408840|ref|ZP_01216982.1| thiophene and furan oxidation protein ThdF [Psychromonas sp. CNPT3]
 gi|90310067|gb|EAS38210.1| thiophene and furan oxidation protein ThdF [Psychromonas sp. CNPT3]
          Length = 455

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 162/459 (35%), Positives = 245/459 (53%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI A +T      + IIR+SGP    V + I  K  P  R A    F    G +
Sbjct: 1   MTKVTDTIVAQATATGRGGVGIIRVSGPDVELVAKHILGKL-PKVRYAEYLPFMDDKGEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F +P SFTGED  E   HGG  V++ +++ +  + NLR A PGEFS RAF N
Sbjct: 60  LDQGIALFFKAPHSFTGEDVLELQGHGGPIVMDMLIQAILTIKNLRGAAPGEFSERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + GE S+     ++ L H+R ++EA +DF E
Sbjct: 120 DKMDLAQAEAIADLIEATSEQAARSALHSLQGEFSNKINALVESLIHLRIYVEASIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE V   S  ++ +D+  +  ++ S   + + G I+R+G K+VI G  NAGKSSL N+L 
Sbjct: 180 EE-VDFLSDGKIASDLAQIVANLESVKKEAQQGAILRDGMKVVIAGRPNAGKSSLLNSLV 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVT+I GTTRDV+   + ++G  + I DTAG+RE+ D VEK GI+R + E++ AD
Sbjct: 239 GADRAIVTEIAGTTRDVMREYIHIDGMPLHIIDTAGLRESADEVEKIGIERAWKEIKTAD 298

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLY--STYTEEYDHL----I 343
            +L + +  +                 P+++    +  K+DL   S   +E +      +
Sbjct: 299 RVLFMLDATTTDSTDPYAIWPDFMKQLPESVGLTVVRNKADLTGESVLVKEGNQYPVYSL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCG 401
           S+ TG G++ L   +K  +            + +RHL  L     +L      L E   G
Sbjct: 359 SAKTGLGMQALKEHLKESMGYT-GSTGGGFMARRRHLEALDNAQHHLLEGKVQLEEYKAG 417

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LR+    L  ITG    + LL  IFS FCIGK
Sbjct: 418 -ELLAEELRITQQYLSDITGAFSSDDLLGKIFSSFCIGK 455


>gi|223041689|ref|ZP_03611885.1| tRNA modification GTPase TrmE [Actinobacillus minor 202]
 gi|198246542|gb|ACH82231.1| tRNA modification GTPase TrmE [Actinobacillus minor 202]
          Length = 452

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 162/458 (35%), Positives = 258/458 (56%), Gaps = 29/458 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G
Sbjct: 2   KETIVAQATPIGRGGVGILRVSGPLASEVAKAVVGKELK-PRLANYLPFMDTDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ + ++  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILEVKGVRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEE-I 179

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LNDI+     +++   + K G I+R G K+VI G  NAGKSSL NALA 
Sbjct: 180 DFLADGKIEAKLNDII---TQLANVRKEAKQGSILREGMKVVIAGKPNAGKSSLLNALAG 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVT+I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD 
Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADH 296

Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLY--STYTEEYDHL----IS 344
           +LL+ + + ++   F           P+NI    I  K DL   S   E+ D      +S
Sbjct: 297 VLLMIDSSEQQADVFKTEWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTLIRLS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402
           + T  G++ L   +K  +  +         + +RHL  L     +LE     L +   G 
Sbjct: 357 AQTKVGVDLLREHLKQSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAG- 414

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 415 ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|85060406|ref|YP_456108.1| tRNA modification GTPase TrmE [Sodalis glossinidius str.
           'morsitans']
 gi|123518608|sp|Q2NQ72|MNME_SODGM RecName: Full=tRNA modification GTPase mnmE
 gi|84780926|dbj|BAE75703.1| thiophene and furan oxidation protein [Sodalis glossinidius str.
           'morsitans']
          Length = 454

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 163/459 (35%), Positives = 245/459 (53%), Gaps = 29/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A++T     ++ I+R+SGP    V   +  K  P PR+A    F   DG  LD+
Sbjct: 3   QTDTITALATPPGRGSVGILRVSGPLAAPVARALLGKL-PRPRQAEYLPFRDDDGTTLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L+ +  MP +R+A PGEFS RAF N K+
Sbjct: 62  GIALFFPGPHSFTGEDVLELQGHGGPVILDLLLQRIVAMPGVRIARPGEFSERAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +    R ++  + G  S    + +  LT++R ++EA +DF +EE 
Sbjct: 122 DLAQAEAIADLIDASSAQAARSAINSLQGAFSGRIHELVKALTNLRIYVEAAIDFPDEE- 180

Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   S  ++   LND++     + +   QG L   +R G K+VI G  NAGKSSL NALA
Sbjct: 181 IDFLSEGKIEASLNDVIARLERVRTEARQGSL---LREGMKVVIAGKPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT I GTTRDVL   + L+G  + I DTAG+R   D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTAIAGTTRDVLREHIHLDGMPLHIIDTAGLRNAGDEVERIGIERAWREIEQAD 297

Query: 301 LILLLKEINSKKEIS------------FPKNIDFIFIGTKSDLYSTYTEEYD------HL 342
            +LL+ +  +   +S             P  +    +  K+DL        D        
Sbjct: 298 HVLLMVD-GAATPLSDPDMLWPAFIARLPSGMPVTVVRNKADLTGESVAISDISGYLLIT 356

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
           +S+ +G G++ L   +K  +          + + +RHL  L     +L+         C 
Sbjct: 357 LSAQSGVGMDLLRTHLKQSMGFTGGTEGGFL-ARRRHLDALETAATHLQQGKEQLVSACY 415

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 416 GELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|307261970|ref|ZP_07543627.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306868331|gb|EFN00151.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 452

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 164/458 (35%), Positives = 254/458 (55%), Gaps = 29/458 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           K+TI A +T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G
Sbjct: 2   KDTIVAQATPIGRGGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-I 179

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LNDI+   N +     QG    I+R G K+VI G  NAGKSSL NALA 
Sbjct: 180 DFLADGKIEGHLNDIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAG 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVT+I GTTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD 
Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADH 296

Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----IS 344
           +LL+ +   +   +F           P++I    I  K DL       +E D      +S
Sbjct: 297 VLLMIDSTEQTAEAFKTEWADFLAKLPQSIPVTVIRNKVDLSGEAEGLQELDGFTLIRLS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402
           + T  G++ L   +K  +  +         + +RHL  L     +LE     L +   G 
Sbjct: 357 AQTKVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG- 414

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 415 ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|157964067|ref|YP_001504101.1| tRNA modification GTPase TrmE [Shewanella pealeana ATCC 700345]
 gi|189036209|sp|A8HAH9|MNME_SHEPA RecName: Full=tRNA modification GTPase mnmE
 gi|157849067|gb|ABV89566.1| tRNA modification GTPase TrmE [Shewanella pealeana ATCC 700345]
          Length = 453

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 163/454 (35%), Positives = 249/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P  R A    F    G ++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGDLATNVAIAVLGHI-PKTRYADYCDFKDEAGEVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  LR+A PGEFS +AF N K+DL
Sbjct: 63  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVDGLRIAKPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + ++  + GE S+     ++K+T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALNSLQGEFSTQIHDLVEKVTNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +   +    +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIAASLNGIVGKLDGVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VEK GI+R + E++ AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTVDTVEKIGIERAWDEIKTADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348
            +  +   I             P N+    +  K+DL     + T+E  H    IS+ TG
Sbjct: 302 VDGTTTAAIDPHEIWPDFIDRLPSNLGVTVVRNKADLTGEDLSVTQEAGHSVYRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
            G+E+L   +KS++  +   L     + +RHL  L     +L +    L     G +++A
Sbjct: 362 LGVEDLKQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLMLGKEQLEVYQAG-ELLA 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 420 EELRMCQMALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|33239666|ref|NP_874608.1| tRNA modification GTPase TrmE [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|46577393|sp|Q7VE01|MNME_PROMA RecName: Full=tRNA modification GTPase mnmE
 gi|33237191|gb|AAP99260.1| Predicted GTPase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 455

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 265/456 (58%), Gaps = 28/456 (6%)

Query: 5   KETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           +E I A+++   P   AI+I+++SG S  +V + + +     P          L G ++D
Sbjct: 8   EENIAAIASAVAPGQGAIAIVKVSGASAKEVVKNVVRT----PSNKIWSSHKILYGHVID 63

Query: 63  KG--------LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
           K         L+++   P SFTGED  E H HGG+ VV  +L+ + K P  R A PGEFS
Sbjct: 64  KSTKKNIDEVLILIMDGPRSFTGEDVVEIHCHGGLIVVQQVLDAILKQPKTRRAFPGEFS 123

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RA  NG++D+ +AE++ DLI + ++   +L++ G+ G++++      +KL    S IEA
Sbjct: 124 QRAVLNGRLDITQAEAINDLIHARSQKAAQLAIAGIDGDITNKINYLREKLLDQLSEIEA 183

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF  EED+   +SK++L D++ ++ ++   I+  K G +IRNG K+ ++G  N GKSS
Sbjct: 184 RIDF--EEDLPKLNSKKLLTDLMLIRAELKQLINDAKQGSLIRNGLKVALVGLPNVGKSS 241

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           + N L+K + AIVTD+PGTTRD+L  ++ LEG  + + DTAGIRET++ +EK G+  +  
Sbjct: 242 ILNLLSKHERAIVTDLPGTTRDLLESEIILEGVPITLIDTAGIRETNNEIEKIGVSLSQK 301

Query: 295 EVENADLILLLKEIN---SKKEISF----PKNIDFIFIGTKSDLYSTYTEEYDH-LISSF 346
            +  AD+++L+ +++   +K + +     PK    + IG K+DL S  T    H  +++ 
Sbjct: 302 TLFTADIVVLIFDLSKGWNKNDQNLLEKIPKGTPTLIIGNKADLKSQSTNIQPHATMTAI 361

Query: 347 TGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404
           TGEG +ELI ++  +  +N+ + +  ++  ++R L  +   V  L ++  +  +    D 
Sbjct: 362 TGEGEKELIQELLKLAGANELEGIEVAL--NQRQLDLVKVAVNALDQIEKVAAESLAWDF 419

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +LR A   LG++TG    E LLD IFS+FCIGK
Sbjct: 420 WTIDLREAIYKLGELTGEEVTEALLDRIFSRFCIGK 455


>gi|294138797|ref|YP_003554775.1| tRNA modification GTPase TrmE [Shewanella violacea DSS12]
 gi|293325266|dbj|BAI99996.1| tRNA modification GTPase TrmE [Shewanella violacea DSS12]
          Length = 453

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 157/454 (34%), Positives = 251/454 (55%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A +T      + IIR+SG    +V   +     P  R A    F   DG ++D+G
Sbjct: 3   EDTIVAQATAPGRGGVGIIRISGDQASEVAMAMLGHI-PKTRYADYCDFKTADGVVIDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F  P SFTGED  E   HGG  V++ +++ + +  ++R+A PGEFS +AF N K+D
Sbjct: 62  IALYFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLETKDIRIARPGEFSEQAFMNDKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + ++  + GE S+     ++K+T++R ++EA +DF +EE V
Sbjct: 122 LTQAEAIADLIDATSEQAAKSALNSLQGEFSTEVHALVEKVTNLRLYVEAAIDFPDEE-V 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              S  ++   +  +   + S  +  K G IIR G K+VI G  NAGKSSL NALA K+ 
Sbjct: 181 DFLSDGKIAGSLNKIITRLDSVKASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKES 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT++ GTTRDVL   + ++G  + I DTAG+R+T D VEK GI+R + E+E AD +L 
Sbjct: 241 AIVTEVAGTTRDVLREHIHIDGMPLHIIDTAGLRDTSDTVEKIGIERAWAEIETADQVLF 300

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFT 347
           + +  +   +             P  +    +  K+DL       T+++ H    IS+ T
Sbjct: 301 MVDGTTTDAVDPHEIWPDFIDRLPSKLGITVVRNKADLTGESLELTQDHGHPVYRISAKT 360

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           G G++ +   +KS++  +   L     + +RHL  L     +L +     E     +++A
Sbjct: 361 GLGIDSVKQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLMLGKEQLEVYLAGELLA 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR++ ++L +ITG    + LL  IFS FCIGK
Sbjct: 420 EELRMSQMALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|332525677|ref|ZP_08401826.1| tRNA modification GTPase TrmE [Rubrivivax benzoatilyticus JA2]
 gi|332109236|gb|EGJ10159.1| tRNA modification GTPase TrmE [Rubrivivax benzoatilyticus JA2]
          Length = 449

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 162/456 (35%), Positives = 252/456 (55%), Gaps = 28/456 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++ I AV+T A   A+ I+R SGP    + + +  +    PR A+L  F   DG +LD+G
Sbjct: 2   RDPIAAVATAAGRGAVGIVRASGPDLAPLVQALFGRALA-PRAATLLPFTAADGSVLDRG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGG----IAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           L I FP+P S+TGED  E   HGG      ++  +LE  A +  LRLA  GEF+ RAF N
Sbjct: 61  LAIHFPAPNSYTGEDVLELQAHGGPVLLQLLLARVLEAGAGI-GLRLARAGEFTERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            KIDL +AE++ADLI + TE   R +   + G  S+       ++  +R+ +EA LDF E
Sbjct: 120 DKIDLAQAEAVADLIDASTEAAARSAARSLDGAFSAEIHTLAGRIVELRALVEATLDFPE 179

Query: 181 EED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           EE   ++   ++E L+ I        +   QG L   +R G ++VI G  N GKSSL NA
Sbjct: 180 EEIDFLEKARARERLDAIEAAIGAALARARQGAL---LREGMRVVIAGQPNVGKSSLLNA 236

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVE 297
           LA  ++AIVT IPGTTRD +   + +EG  + + DTAG+RE   D VE+ GI R++  +E
Sbjct: 237 LAGAELAIVTPIPGTTRDRVAETIQIEGVPLHVVDTAGLREHAADEVERIGIGRSWEAIE 296

Query: 298 NADLILLLKEINSKKEISFP----------KNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
            AD +L + ++  + + ++           +  D + +  K+D  +    +   ++S+  
Sbjct: 297 GADAVLFVHDLTRRGDAAYEAAEAEIATRLQGADVLHVHNKADAAAQVAGD-GVVLSAKA 355

Query: 348 GEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLN--EKDCGLDI 404
           G GLE L  ++  +    ++  P  +  +  RH+  L +T+ +L +A  +  ++D  LD+
Sbjct: 356 GTGLETLRREL--LRRAGWQAQPDGVFIARARHVDALQRTLAHLHLAQAHAAQRDAALDL 413

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRL+  +LG+ITG    E LL  IF +FCIGK
Sbjct: 414 LAEELRLSHQALGEITGEFGTEDLLGEIFGRFCIGK 449


>gi|212211699|ref|YP_002302635.1| tRNA modification GTPase TrmE [Coxiella burnetii CbuG_Q212]
 gi|212010109|gb|ACJ17490.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Coxiella burnetii CbuG_Q212]
          Length = 473

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 174/463 (37%), Positives = 258/463 (55%), Gaps = 45/463 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFGLDGRILDK 63
           ETI A +T +    I ++R+SG     + + I  C    P PR A+   F    G ++D+
Sbjct: 28  ETIAAQATPSGRGGIGVVRVSGEKTKAIAQKILGCV---PKPRYATFVKFRD-SGSVIDE 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E H HGG  V++ +L  + K    R A PGEFS RAF N KI
Sbjct: 84  GISLYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKA-GARQARPGEFSERAFLNNKI 142

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI++ +E   R +M  + GE S    Q +D L  +R +IEA +DF EEE 
Sbjct: 143 DLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEEI 202

Query: 184 --VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   KE L ++     +I     QG L   +R G  +VI G  N GKSSL N L+ 
Sbjct: 203 DFLADERIKETLENLTHQVQEIEKTAKQGAL---LREGITVVIAGEPNVGKSSLLNLLSG 259

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRD++   + ++G  + + DTAG+R T+D+VEKEG++RT   V+ ADL
Sbjct: 260 QETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLTEDVVEKEGVRRTQKAVQQADL 319

Query: 302 ILLLKEINS-----KKEIS--FPKN---IDFIFIGTKSDLYSTY----TEEYDHL-ISSF 346
           +LL+ + +      KK I+  F +N   I  + +  K DL         +EY H+ +S  
Sbjct: 320 LLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIVENKIDLIGEAPRKENKEYPHIKLSVK 379

Query: 347 TGEGLEELINKIKSILS------NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNE 397
           T  G+E L N +K+         N F        + +RH   +++   +L+ A+   LN+
Sbjct: 380 TRAGVELLKNHLKNTAGFEATHENNFI-------ARRRHCDAIARASAFLKNANNHLLNQ 432

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           K    +++AE+L+LA  +L +ITG    + LL  IFS+FCIGK
Sbjct: 433 K--AGELVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 473


>gi|302185835|ref|ZP_07262508.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. syringae
           642]
          Length = 456

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 164/461 (35%), Positives = 248/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLASKAAEAIIGRTLK-PRFAHYGPFVDDAGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE+++DLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAISDLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL+ +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLSMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDRVDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399
            +    GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|307297010|ref|ZP_07576826.1| tRNA modification GTPase TrmE [Sphingobium chlorophenolicum L-1]
 gi|306877536|gb|EFN08764.1| tRNA modification GTPase TrmE [Sphingobium chlorophenolicum L-1]
          Length = 426

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 160/440 (36%), Positives = 240/440 (54%), Gaps = 21/440 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-GLDGRILDKG 64
           ++IFA+S+GA P+ I +IR+SGPS       +     P PR A L       DG +LD+ 
Sbjct: 3   DSIFALSSGAPPAGIGVIRISGPSAGPALIALAGALPP-PRHARLSSLTDPRDGALLDRA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P + TGED AE H HGG AV+  I E L+ +P LR A  GEF+RRAF NG++D
Sbjct: 62  LILWFPGPSTVTGEDLAELHCHGGRAVIAAIEEALSTLPGLRRAEAGEFTRRAFANGRMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L   E L+DL+++ET+ QRR ++    G  S     W   L  + +  EA LDFS+E+DV
Sbjct: 122 LNAVEGLSDLLAAETQQQRRAALLMAEGHFSRRVEDWRRTLLDLSAMTEAALDFSDEDDV 181

Query: 185 QNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
            +      +   I  L +D+ + I      E +R+G ++V+ G  NAGKS+L N L  ++
Sbjct: 182 PDEGIEARIGQGIQTLADDVEA-ILAAPSAERLRDGVRVVLAGPPNAGKSTLLNRLVGRE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLI 302
            AIV+DI GTTRD + +   L G      DTAG+R ET D +E  G++R    ++ AD+I
Sbjct: 241 AAIVSDIAGTTRDRIEVPAALGGAAFLFMDTAGLRDETSDAIEAIGMERARGALDAADII 300

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSI 361
           L L   +           D I +  + D     T+    L +S+ TGEG+ EL+  +   
Sbjct: 301 LWLGPADEA------PRADAILLAPQCD---RRTDSRPGLRLSAITGEGMPELVALLLDR 351

Query: 362 LSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
            +     +  +++   +R    L  T  +L  A++++    L I+AE LR A  ++ ++T
Sbjct: 352 AARLLPGEGDYALHRRQRDAASLLHT--HLASAAVSDD---LLIVAELLRQARNAIDQLT 406

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G    E +LD +FS FCIGK
Sbjct: 407 GRASTEDMLDHLFSGFCIGK 426


>gi|240949809|ref|ZP_04754138.1| tRNA modification GTPase TrmE [Actinobacillus minor NM305]
 gi|240295726|gb|EER46421.1| tRNA modification GTPase TrmE [Actinobacillus minor NM305]
          Length = 452

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 162/458 (35%), Positives = 257/458 (56%), Gaps = 29/458 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G
Sbjct: 2   KETIVAQATPIGRGGVGILRVSGPLANEVAKAVVGKELK-PRLANYLPFMDTDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILAVKGVRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEE-I 179

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LNDI+     +++   + K G I+R G K+VI G  NAGKSSL NALA 
Sbjct: 180 DFLADGKIEAKLNDII---TQLANVRKEAKQGSILREGMKVVIAGKPNAGKSSLLNALAG 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVT+I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD 
Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADH 296

Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLY--STYTEEYDHL----IS 344
           +LL+ + + ++   F           P+NI    I  K DL   S   E+ D      +S
Sbjct: 297 VLLMIDSSEQQADVFKTEWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTLIRLS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402
           + T  G++ L   +K  +  +         + +RHL  L     +LE     L +   G 
Sbjct: 357 AQTKVGVDLLREHLKQSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAG- 414

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 415 ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|313111481|ref|ZP_07797282.1| putative GTPase for tRNA modification and thiophene and furan
           oxidation [Pseudomonas aeruginosa 39016]
 gi|310883784|gb|EFQ42378.1| putative GTPase for tRNA modification and thiophene and furan
           oxidation [Pseudomonas aeruginosa 39016]
          Length = 455

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 164/461 (35%), Positives = 254/461 (55%), Gaps = 27/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    ETI A++T      + I+R+SGP   Q+   +  ++    R A    F    G++
Sbjct: 1   MQAATETIVAIATAQGRGGVGIVRVSGPLAGQMAVAVSGRQLK-ARHAHYGPFLDAGGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GL + FP P SFTGED  E   HGG  V++ +++   ++   R A PGEFS RAF N
Sbjct: 60  IDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLEL-GARQARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + GE S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  ++ ++S+   +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+T+D VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS----FPKNID-------FIFIGTKSDLYS---TYTEEYD-HL--- 342
            +LL+ +  + +       +P+ +D          I  K+DL +      E  D H+   
Sbjct: 298 RVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIGLEESADGHVTIT 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLE--MASLNEKD 399
           +S+ T  GLE L   +K+ +   F++   S   + +RHL  L Q  + LE   + L    
Sbjct: 358 LSARTSAGLELLREHLKACMG--FEQTAESGFSARRRHLEALRQAGQALEHGHSQLIHNG 415

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A   LG+ITG    + LL  IFS FCIGK
Sbjct: 416 AG-ELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455


>gi|190171196|gb|ACE63668.1| ThdF [Enterobacter helveticus]
 gi|190171198|gb|ACE63669.1| ThdF [Enterobacter helveticus]
 gi|190171200|gb|ACE63670.1| ThdF [Enterobacter helveticus]
 gi|190171202|gb|ACE63671.1| ThdF [Enterobacter helveticus]
 gi|190171204|gb|ACE63672.1| ThdF [Enterobacter helveticus]
 gi|190171206|gb|ACE63673.1| ThdF [Enterobacter helveticus]
 gi|190171208|gb|ACE63674.1| ThdF [Enterobacter helveticus]
 gi|190171210|gb|ACE63675.1| ThdF [Enterobacter helveticus]
 gi|190171212|gb|ACE63676.1| ThdF [Enterobacter helveticus]
 gi|190171216|gb|ACE63678.1| ThdF [Enterobacter helveticus]
          Length = 439

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 241/434 (55%), Gaps = 23/434 (5%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SG     V + +  K  P PR A    F   D   LD+G+ + FP P SFTGE
Sbjct: 10  GVGILRISGKQARDVAQAVLGKL-PKPRYADYLPFKDSDNTPLDQGIALWFPGPNSFTGE 68

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + 
Sbjct: 69  DVLELQGHGGPVILDLLLKRILTIPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDAS 128

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   +  
Sbjct: 129 SEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNT 187

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL
Sbjct: 188 VIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 247

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--- 315
              + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +   +    
Sbjct: 248 REHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGTTTDAVDPAQ 307

Query: 316 --------FPKNIDFIFIGTKSDLY---STYTEEYDH---LISSFTGEGLEELINKIKSI 361
                    P+N+    +  K+D+    +  +E   H    +S+ +GEG+E L + +KS 
Sbjct: 308 IWPDFMARLPQNLPITVVRNKADVTGEPAGLSEVNGHSLIRLSARSGEGVEVLRDHLKSS 367

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKI 419
           +      +     + +RHL  L +   +L+   A L     G +++AE LRLA  SL +I
Sbjct: 368 MGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG-ELLAEELRLAQQSLSEI 425

Query: 420 TGCVDVEQLLDIIF 433
           TG    + LL  IF
Sbjct: 426 TGEFTSDDLLGRIF 439


>gi|218681276|ref|ZP_03529173.1| tRNA modification GTPase TrmE [Rhizobium etli CIAT 894]
          Length = 212

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 117/212 (55%), Positives = 158/212 (74%)

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP+P SFTGED AE  +HG  AV+  +   L  +P +R+A  GEFSRRAFENGK+DL
Sbjct: 1   MLFFPAPNSFTGEDVAELQIHGSRAVLAALFHALGDVPGVRMAVEGEFSRRAFENGKLDL 60

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E LADLI +ETEMQRRL++E  +G LS++Y  W ++LT  R+ IEA+LDF +E+DV 
Sbjct: 61  VEIEGLADLIGAETEMQRRLAIEQSAGGLSAIYDSWAERLTRARAMIEAELDFPDEDDVP 120

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  V  D+  L+++I  H++    GEIIR+G+K+VI G  NAGKSSL NAL ++DVA
Sbjct: 121 GSVSDMVWTDMEKLRSEIEEHLAAASAGEIIRDGFKVVIAGAPNAGKSSLLNALTRRDVA 180

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           IVT+I GTTRDVL +DLD++GYL+K+ DTAG+
Sbjct: 181 IVTEIAGTTRDVLQVDLDIDGYLIKLYDTAGL 212


>gi|170724368|ref|YP_001752056.1| tRNA modification GTPase TrmE [Pseudomonas putida W619]
 gi|205415795|sp|B1JFV3|MNME_PSEPW RecName: Full=tRNA modification GTPase mnmE
 gi|169762371|gb|ACA75687.1| tRNA modification GTPase TrmE [Pseudomonas putida W619]
          Length = 456

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 165/463 (35%), Positives = 257/463 (55%), Gaps = 30/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+RLSGP   +  + I  +    PR A    F   +G +
Sbjct: 1   MNTVRETIAAIATAQGRGGVGIVRLSGPLAAKAGQLITGRTLT-PRHAHYGPFRDQEGLV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQV-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + GE S       + L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSKRVHSLTEALIALRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL+ +  ++ ++S+   +   G ++R+G  +VI G  NAGKSSL N LA
Sbjct: 179 EE-IDFLADGHVLSMLDSVRAELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSLLNQLA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT I GTTRD+L   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTAIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----FPKNID-------FIFIGTKSDLYSTYT--EEYD--HLIS 344
            +LL+ + ++  E S     +P+ +D          I  K+DL       E+ D  H+  
Sbjct: 298 RVLLVVD-STAPEASDPFALWPEFLDQRPDPGKVTLIRNKADLSGEPVGLEQCDDGHVTI 356

Query: 345 SFTGEGLEE----LINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397
           + + +G ++    L + +K+ +   +  +  FS  + +RHL  L Q   +LE   A L  
Sbjct: 357 TLSAKGDDQGLLLLRDHLKACMGYEQTAESGFS--ARRRHLDALRQACAHLEHGRAQLTL 414

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 415 AGAG-ELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|254237759|ref|ZP_04931082.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126169690|gb|EAZ55201.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 455

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 164/460 (35%), Positives = 252/460 (54%), Gaps = 25/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    ETI A++T      + I+R+SGP   Q+   +  ++    R A    F    G++
Sbjct: 1   MQAATETIVAIATAQGRGGVGIVRVSGPLAGQMAVAVSGRQLK-ARHAHYGPFLDAGGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GL + FP P SFTGED  E   HGG  V++ +++   ++   R A PGEFS RAF N
Sbjct: 60  IDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLEL-GARQARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + GE S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  ++ ++S+   +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+T+D VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS----FPKNID-------FIFIGTKSDLYS---TYTEEYD-HL--- 342
            +LL+ +  + +       +P+ +D          I  K+DL +      E  D H+   
Sbjct: 298 RVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIGLEESADGHVTIT 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           +S+ TG GLE L   +K+ +   F++   S   + +RHL  L    + LE         G
Sbjct: 358 LSARTGAGLELLREHLKACMG--FEQTAESGFSARRRHLEALRLAGQALEHGYSQLIHNG 415

Query: 402 LD-IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D ++AE+LR A   LG+ITG    + LL  IFS FCIGK
Sbjct: 416 ADELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455


>gi|221126301|ref|XP_002165330.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 498

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 157/427 (36%), Positives = 228/427 (53%), Gaps = 33/427 (7%)

Query: 45  PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGG-----------IAVVN 93
           PR+A+   F    G+ +D GL + FP P SFTGED  E   HGG           +A+ N
Sbjct: 74  PREATYLPFPDEKGQPIDHGLALFFPGPHSFTGEDVLELQAHGGPVVLQLLVARCLALAN 133

Query: 94  GILEELAK---MPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM 150
            +  E      +P LR+A  GEF++RAF N K+DL +AE++ADLI + TE   R + + +
Sbjct: 134 SVQTEGVSSVLLPGLRIAEAGEFTQRAFLNNKLDLAQAEAIADLIDASTEAAARSASQSL 193

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
           SG  S   G   D L H+R  +EA LDF EEE +      + +  +  L+  +   +++ 
Sbjct: 194 SGAFSKEIGILRDALIHLRMLVEATLDFPEEE-IDFLQKADAVGQLQRLQQALQQVLAKA 252

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
             G ++R G K+VI G  NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + 
Sbjct: 253 TQGALLREGLKVVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQETIQIEGVPLH 312

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-------------- 316
           I DTAG+R +DD VEK GI+R +  +E AD +L L ++     I +              
Sbjct: 313 IIDTAGLRASDDAVEKIGIERAWQAIEAADAVLFLHDLTRSSAIEYIAADADIAGAIAEK 372

Query: 317 -PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            P +I  I +  KSD  +  T      +S+ TG GL+ L   + +    +  +   +  +
Sbjct: 373 LPASIPVIHVWNKSDAATPETGLEGIFLSAKTGVGLDALRQNLLTAAGWQPAQ-SGAFMA 431

Query: 376 HKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
            +RH+  L    ++L+MAS  L      LD++AE LRL   +L  ITG    + LL +IF
Sbjct: 432 RQRHVQALHLVGQHLDMASELLASGSAALDLLAEELRLGQNALNSITGEFGADDLLGVIF 491

Query: 434 SKFCIGK 440
           SKFCIGK
Sbjct: 492 SKFCIGK 498


>gi|190171170|gb|ACE63655.1| ThdF [Citrobacter sp. NZ3872_90]
          Length = 439

 Score =  249 bits (635), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 153/434 (35%), Positives = 241/434 (55%), Gaps = 23/434 (5%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTGE
Sbjct: 10  GVGILRISGLKASEVAETVLGKL-PKPRYADYLPFKDEDGSALDQGIALWFPGPNSFTGE 68

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI + 
Sbjct: 69  DVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDAS 128

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   +  
Sbjct: 129 SEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLNS 187

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL
Sbjct: 188 VMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 247

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--- 315
              + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +    
Sbjct: 248 REHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAD 307

Query: 316 --------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIKSI 361
                    P  +    +  K+D+       +E   H    +S+ TGEG++ L N +K  
Sbjct: 308 IWPDFIARLPAKLPITVVRNKADITGETLGLSEVNGHSLVRLSARTGEGVDVLRNHLKQS 367

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKI 419
           +  +   +     + +RHL  L++   +L+   A L     G +++AE LRLA  +L +I
Sbjct: 368 MGFE-TNMEGGFLARRRHLQALAEAAEHLQQGKAQLLGAWAG-ELLAEELRLAQQNLSEI 425

Query: 420 TGCVDVEQLLDIIF 433
           TG    + LL  IF
Sbjct: 426 TGEFTSDDLLGRIF 439


>gi|190171240|gb|ACE63690.1| ThdF [Enterobacter sp. KM877_04]
          Length = 439

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 154/435 (35%), Positives = 240/435 (55%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDTDGTPLDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILMLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   + 
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 187 SVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +   
Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIELADRVLFMVDGTTTDAVDPA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+D+       +E   H    +S+ TGEG+++L N +K 
Sbjct: 307 DIWPDFIARLPAKLPITVVRNKADVTGETLGISEVNGHSLIRLSARTGEGVDDLRNHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +      +     + +RHL  L    R+L+   A L     G +++AE LRLA  +L +
Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEDAARHLDQGKAQLLGAWAG-ELLAEELRLAQQNLSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 425 ITGEFTSDDLLGRIF 439


>gi|260576109|ref|ZP_05844102.1| small GTP-binding protein [Rhodobacter sp. SW2]
 gi|259021589|gb|EEW24892.1| small GTP-binding protein [Rhodobacter sp. SW2]
          Length = 428

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 166/443 (37%), Positives = 248/443 (55%), Gaps = 24/443 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFFGLDGRILDK 63
           +TI+A+++    + ++++RLSGP  F   + +     P P  R+  LR      G  LD+
Sbjct: 2   DTIYALASARGKAGVAVVRLSGPQAFAAVQALAG---PLPDLRRVGLRRLV-WQGVELDQ 57

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L+++F    SFTGE  AE H+HG  AVV+ +L  L++   LRLA PGEF+RRA ENG +
Sbjct: 58  ALVLLFGDGASFTGEAVAELHLHGSTAVVSAVLRALSEQNGLRLAMPGEFTRRALENGCL 117

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL + E LADLI +ETE QRR ++  +SG +  +   W   L    + +EA +DF+ +ED
Sbjct: 118 DLAQIEGLADLIDAETESQRRQALRVLSGAVGKIAQGWRHDLIRAAALLEATIDFA-DED 176

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V    + EV   +  L   +   I   ++ E IR+G+++ ILG  N GKS+L N LA ++
Sbjct: 177 VPLDVTPEVCVLLDGLLAALRREIDGSRIAERIRDGFEVAILGAPNVGKSTLLNTLAGRE 236

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AI ++I GTTRDV+ + +DL G  V + DTAG+RET D VE  GI+R      +ADL +
Sbjct: 237 AAITSEIAGTTRDVIEVRMDLGGLPVTLLDTAGLRETLDQVEGIGIQRALARAADADLRV 296

Query: 304 LLKEINSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIK 359
            L E      I  P  +   D I +G K+D+        D L +S  TGEG+ +L+ +I 
Sbjct: 297 FLLE----DGIDLPGIVPGPDDILVGGKADIRGG-----DGLRVSGKTGEGIADLVAEIT 347

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLG 417
             L  +   L  +I + +RH   +   +R +E   A +      +++ AE L  A  ++ 
Sbjct: 348 RRLVQR-SGLAGTI-TRERHRIAIEGAIRAMESARAEVGSALPRVELAAEALHQAIRAMD 405

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
            + G VDVE LLD IF+ FCIGK
Sbjct: 406 SLVGRVDVENLLDEIFASFCIGK 428


>gi|183597177|ref|ZP_02958670.1| hypothetical protein PROSTU_00420 [Providencia stuartii ATCC 25827]
 gi|188023491|gb|EDU61531.1| hypothetical protein PROSTU_00420 [Providencia stuartii ATCC 25827]
          Length = 454

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 167/463 (36%), Positives = 252/463 (54%), Gaps = 41/463 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SGP    V + +  K  P PR A    F  +D  +LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGPKAAVVAQTVLGKL-PKPRYADYLPFRDVDDTVLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I FP P SFTGED  E   HGG  +++ +L  +  +  +R+ANPGEFS RAF N K+DL
Sbjct: 64  AIFFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTIDGVRIANPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M  + G  S+   Q ++ LT +R ++EA +DF +EE + 
Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSAQIHQMVEALTTLRIYVEAAIDFPDEE-ID 182

Query: 186 NFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
             S  ++   L+D++    D+    S+ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 183 FLSDGKIEAKLDDVI---ADLERVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + + DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAGLREASDEVERIGIERAWKEIEQADRV 299

Query: 303 LLL-----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISS 345
           L +           +EI  +     P+ +    I  K+D      E  + +      +S+
Sbjct: 300 LFMLDSTTTDATEPQEIWPEFMARLPETLPVTVIRNKADKTGEKIEFVEDVRYPLIRLSA 359

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHL-------YHLSQTVRYLEMASLNE 397
              +G++ L + +K  +  N   +  F   + +RHL        HL+Q    L +A   E
Sbjct: 360 REEKGIDLLRDHLKETMGFNSNTEGGFL--ARRRHLQALDAAAMHLAQGHEQLVVARSGE 417

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 ++AE LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 418 ------LLAEELRLAQQELSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|190171186|gb|ACE63663.1| ThdF [Enterobacter asburiae]
          Length = 439

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 154/435 (35%), Positives = 239/435 (54%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDTDGTPLDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   + 
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ND+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 187 QVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +   
Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+D+        D   H    +S+ TGEG+++L N +K 
Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVDDLRNHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +      +     + +RHL  L +   +L    A L     G +++AE LRLA  +L +
Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEEAANHLVQGKAQLIGAWAG-ELLAEELRLAQQNLSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 425 ITGEFTSDDLLGRIF 439


>gi|299752969|ref|XP_001832975.2| tRNA modification GTPase GTPBP3 [Coprinopsis cinerea okayama7#130]
 gi|298410084|gb|EAU88664.2| tRNA modification GTPase GTPBP3 [Coprinopsis cinerea okayama7#130]
          Length = 501

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 158/477 (33%), Positives = 255/477 (53%), Gaps = 44/477 (9%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-----KKKPFPRK-ASLRYFFG 55
           + ++ TI+A+ T    + ++++R+SGP   +    + K     +  P P K    R    
Sbjct: 31  DAQRSTIYALGTPPGKAGVAVVRVSGPDALETWRGMVKGSGGHETTPQPWKLKRCRIVHP 90

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +G  +D GL + F  P+SFT ED+ E H+H G AV+   L  L+  P  R A PGEF+R
Sbjct: 91  QNGETIDDGLAVFFKGPKSFTAEDTVELHLHSGPAVIAAALAALSTFPTCRPAAPGEFTR 150

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL + E L DLI + TE QR++++    G +   + +   ++    + +EA 
Sbjct: 151 RAFLNGRMDLTQVEGLKDLIDAGTESQRKIALRAAEGAIREKFDELRQRIISALAKVEAL 210

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF E E+++    ++  + +  + + I  +++  + GE++R+G ++ I G  NAGKSSL
Sbjct: 211 IDFGEGEEIEEGVYEDARSQVTEVVDIIKGYLNDHRRGELLRSGIRLAIFGPPNAGKSSL 270

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N LA+++ AIVT IPGTTRD+L + LD+ G  V ++DTAG+R+TDD VE+ GI+R    
Sbjct: 271 LNILARREAAIVTPIPGTTRDILELALDIGGLPVIVADTAGLRKTDDTVEQIGIERARKA 330

Query: 296 VENADLIL----------LLKEINSKKEISFPKNIDFIFIGTKSDLYST----------- 334
           V N+D+ +          L ++ N+ KE+  P      F+  K+DL              
Sbjct: 331 VANSDVSICVLSLPDLQNLTEDGNNWKELITPNT---YFLLNKADLMPAQWRPDSAVLRE 387

Query: 335 --YTEEYDHLISSFTGEGLEELINKIKSILSNKF-------KKLPFSIPSHKRHLYHLSQ 385
               +E   + S    +G E  ++   S L  +F       +     I + +RH  +L  
Sbjct: 388 LGVVQERMWVSSLAKRDGFEVFLSGFASALQKQFGMSDDLTEATQSPIITRQRHRENLEN 447

Query: 386 TVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             R+LE A     D   DI+  AE LR A+ ++GK+TG + VE +LD +F  FCIGK
Sbjct: 448 ATRFLESALAYGPD---DIVFAAEELRYAANAIGKVTGAIGVEDVLDAVFRDFCIGK 501


>gi|190171178|gb|ACE63659.1| ThdF [Citrobacter koseri]
          Length = 439

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 152/435 (34%), Positives = 241/435 (55%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTALDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   + 
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 187 GVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +   
Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+D+       +E   H    +S+ TGEG++ L N +K 
Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +      +     + +RHL  L++  ++L+   + L     G +++AE LRLA  +L +
Sbjct: 367 SMGFD-TNMEGGFLARRRHLQALAEAAKHLQQGKSQLLGAWAG-ELLAEELRLAQQALSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 425 ITGEFTSDDLLGRIF 439


>gi|169635754|emb|CAQ16331.1| t-RNA modification GTPase protein [Pseudomonas syringae]
          Length = 458

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 162/463 (34%), Positives = 249/463 (53%), Gaps = 28/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   ETI AV+T      + I+R+SGP    +      +++  PR A    F+G +  +
Sbjct: 1   MSVAAETIAAVATAQGRGGVGIVRISGP-LASIAAKAFSERELKPRYAHYGPFYGENREV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCIQL-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLGMLDKVRQELSTVMREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISS 345
            +LL+ +  + +               P       I  K+DL          +  H+  S
Sbjct: 298 RVLLVVDATAPEADDPFALWPEFLQQRPDPAKVTLIRNKADLTGEDIRLQVCDDGHVTIS 357

Query: 346 FT------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397
            +      G+GLE L + +K+ +  + +    S  + +RHL  L      LE   A L  
Sbjct: 358 LSARSTDAGDGLELLRDHLKACMGYE-QTSESSFSARRRHLEALRHASDALEHGRAQLTL 416

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              G +++AE+LR A  SLG+ITG    + LL  IFS FCIGK
Sbjct: 417 AGAG-ELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 458


>gi|300692994|ref|YP_003753989.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Ralstonia solanacearum PSI07]
 gi|299080054|emb|CBJ52729.2| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Ralstonia solanacearum PSI07]
          Length = 474

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 152/459 (33%), Positives = 243/459 (52%), Gaps = 29/459 (6%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A++T      I ++R+SGP    V + +C +    PR+A+   F   DG  +D+G+ +
Sbjct: 19  IAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRLLQ-PRQATYLPFLDADGSAIDRGIAL 77

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKID 124
            FP+P S+TGED  E   HGG  V+  +L    +  +   LR+A PGEF+RRAF N K+D
Sbjct: 78  WFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGHGIGLRVAEPGEFTRRAFLNDKLD 137

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + TE   R +   + G  S      ++++ H+R  +EA LDF EEE +
Sbjct: 138 LAQAEAVADLIEASTEAAARSAARSLDGAFSQAVHALVERVIHLRMLVEATLDFPEEE-I 196

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +    +  ++  +   ++Q + G ++R G  +V+ G  N GKSSL NALA  ++
Sbjct: 197 DFLEASDARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAEL 256

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT+  +  AD++L 
Sbjct: 257 AIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLH 316

Query: 305 L---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTY------TEEYDHLI 343
           L                 I+++     P  +  + +  K DL           +  +  +
Sbjct: 317 LLDAADYRAHGLCAEDAAIDARIAGHVPSGVPTLRVINKIDLTGLAVPGRVDAQPPEVWL 376

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCG 401
           S+  G G+E L   +  I   +       + + +RHL  L     +L + +   +++   
Sbjct: 377 SARDGSGIESLRAALLEIAGWQGGGEGLYL-ARERHLAALRAAKAHLAIGADHADQQAQS 435

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 436 LDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 474


>gi|15600760|ref|NP_254254.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PAO1]
 gi|107104668|ref|ZP_01368586.1| hypothetical protein PaerPA_01005747 [Pseudomonas aeruginosa PACS2]
 gi|218894669|ref|YP_002443539.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa LESB58]
 gi|14195275|sp|Q9HT07|MNME_PSEAE RecName: Full=tRNA modification GTPase mnmE
 gi|9951908|gb|AAG08952.1|AE004968_6 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|218774898|emb|CAW30717.1| putative GTPase for tRNA modification and thiophene and furan
           oxidation [Pseudomonas aeruginosa LESB58]
          Length = 455

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 164/461 (35%), Positives = 254/461 (55%), Gaps = 27/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    ETI A++T      + I+R+SGP   Q+   +  ++    R A    F    G++
Sbjct: 1   MQAATETIVAIATAQGRGGVGIVRVSGPLAGQMAVAVSGRQLK-ARHAHYGPFLDAGGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GL + FP P SFTGED  E   HGG  V++ +++   ++   R A PGEFS RAF N
Sbjct: 60  IDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLEL-GARQARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + GE S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  ++ ++S+   +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+T+D VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS----FPKNID-------FIFIGTKSDLYS---TYTEEYD-HL--- 342
            +LL+ +  + +       +P+ +D          I  K+DL +      E  D H+   
Sbjct: 298 RVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIGLEESADGHVTIT 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLE--MASLNEKD 399
           +S+ TG GLE L   +K+ +   F++   S   + +RHL  L    + LE   + L    
Sbjct: 358 LSARTGAGLELLREHLKACMG--FEQTAESGFSARRRHLEALRLAGQALEHGHSQLIHNG 415

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A   LG+ITG    + LL  IFS FCIGK
Sbjct: 416 AG-ELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455


>gi|190171172|gb|ACE63656.1| ThdF [Citrobacter sp. OD1158_06]
          Length = 439

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 153/434 (35%), Positives = 242/434 (55%), Gaps = 23/434 (5%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTGE
Sbjct: 10  GVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDEDGSALDQGIALWFPGPNSFTGE 68

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI + 
Sbjct: 69  DVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDAS 128

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   +  
Sbjct: 129 SEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLNS 187

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           + +D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL
Sbjct: 188 VISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 247

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--- 315
              + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +    
Sbjct: 248 REHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAD 307

Query: 316 --------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIKSI 361
                    P  +    +  K+D+       +E   H    +S+ TGEG++ L N +K  
Sbjct: 308 IWPDFIARLPAKLPITVVRNKADITGETLGLSEVNGHSLVRLSARTGEGVDVLRNHLKQS 367

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKI 419
           +  +   +     + +RHL  L++   +LE   + L     G +++AE LRLA  +L +I
Sbjct: 368 MGFE-TNMEGGFLARRRHLQALAEAAEHLEQGKSQLLGAWAG-ELLAEELRLAQQNLSEI 425

Query: 420 TGCVDVEQLLDIIF 433
           TG    + LL  IF
Sbjct: 426 TGEFTSDDLLGRIF 439


>gi|134096615|ref|YP_001101690.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans]
 gi|205829158|sp|A4GAN2|MNME_HERAR RecName: Full=tRNA modification GTPase mnmE
 gi|133740518|emb|CAL63569.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans]
          Length = 466

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 168/469 (35%), Positives = 248/469 (52%), Gaps = 32/469 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF---PRKASLRYFFGLD 57
           M  +   I A++T      I ++R+SG     V   +C   K      R A+   F   D
Sbjct: 1   MTFDSSPIAAIATAPGRGGIGVVRISGKDLSSVMRAVCGADKGSSLQARHATYLDFVNSD 60

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFS 114
           G ++D+GL I F +P S+TGED  E   HGG  V+  +L    E      LR+A PGEF+
Sbjct: 61  GSVIDQGLAIYFKAPHSYTGEDVLELQGHGGPVVLQMLLTRCLEAGADIGLRMAEPGEFT 120

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF N K+DL +AE + DLI + TE   + + + +SG  S    + +DK+T++R  +EA
Sbjct: 121 HRAFLNDKLDLAQAEGVIDLIEASTEAAAKSATQSLSGAFSKTIQELVDKITNLRMLVEA 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LDF EEE +      +    +  ++  +    SQ   G ++R+G  IV+ G  N GKSS
Sbjct: 181 TLDFPEEE-IDFLEKSDARGQLTNIREALQRVFSQAAQGALLRDGLNIVLAGQPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKR 291
           L NALA  DVAIVT I GTTRD +   + +EG  V + DTAGIR+  D    VE+ GI+R
Sbjct: 240 LLNALAGSDVAIVTPIAGTTRDKVIETIQIEGIPVNVIDTAGIRDAADAGDEVERIGIER 299

Query: 292 TFLEVENADLILLLKEIN-----SKKEIS--FPKNIDFIFIGTKSDLYSTYTEEYD---- 340
           T+  V+ AD+I+ + + +     + ++I+  FP N+  + +  K DL S +    D    
Sbjct: 300 TWAAVQTADVIVHMLDASRGPTRADEQITERFPANVPVMRVWNKIDL-SGHRPAIDRMPD 358

Query: 341 --HLISSFTG-EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-- 395
             H+  S TG  G++ L  ++  ++  +       + + +RHL  L     +LEMA+   
Sbjct: 359 ATHIYLSATGLLGMDLLRTELLHLVGWQQTGESLYL-ARERHLVALKSAHSHLEMAAQHA 417

Query: 396 ---NEK-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              NE  D  LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 418 AHDNEATDPALDLFAEELRLAQERLSSITGEFTSDDLLGVIFSRFCIGK 466


>gi|103488330|ref|YP_617891.1| tRNA modification GTPase TrmE [Sphingopyxis alaskensis RB2256]
 gi|123379471|sp|Q1GP64|MNME_SPHAL RecName: Full=tRNA modification GTPase mnmE
 gi|98978407|gb|ABF54558.1| tRNA modification GTPase trmE [Sphingopyxis alaskensis RB2256]
          Length = 419

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 160/427 (37%), Positives = 244/427 (57%), Gaps = 17/427 (3%)

Query: 23  IRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAE 82
           +R+SG    +  + +  +  P PR+ASL      DG  LD  L++ FP P + TGED AE
Sbjct: 1   MRISGIDAAKALQALAGRL-PTPRRASLARLTDTDGGALDHALILWFPGPATATGEDLAE 59

Query: 83  FHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ 142
            H+HGG AVV  +   LA MP LR A  GEF+RRAF NG+IDL EAE LADL+++ETE Q
Sbjct: 60  LHLHGGRAVVAAVEAALAAMPGLRRAEAGEFTRRAFANGRIDLAEAEGLADLLAAETESQ 119

Query: 143 RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ--NFSSKEVLNDILFLK 200
           R  +++  SG +S     W  +L  + +  EA+L+F++E+DV+     ++ V   +  L 
Sbjct: 120 RVQALDHASGHVSRAVAGWQARLLALMAAAEAELNFADEDDVEVGEGVAQRVSEGMAALA 179

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            ++   +++    E+I  G  +VI G  NAGKS+L NALA++++AIV+ + GTTRDV+  
Sbjct: 180 GELGEWLAR-PAAEVIAEGLSVVIAGPPNAGKSTLINALAQRELAIVSPVAGTTRDVIET 238

Query: 261 DLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            L L+G  ++ SDTAG+R E+ D +E  GI R    VE AD++L L    + KE   P++
Sbjct: 239 PLALDGIAMRFSDTAGLRGESADAIEMIGIDRAKAAVEGADILLWL---GAPKEA--PEH 293

Query: 320 IDFIFIGTKSDLY------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              I I  ++D +             D ++S+ TGEG++ L   I  +      +     
Sbjct: 294 PRTILIAAQADRWRGDAAAEAEAAHCDLILSAATGEGMDRLHTMIVEMARTLLPR-EGEA 352

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
              +R    L++   +LE+ + + +   L ++AE LRLA  +L +ITG   VE +LD +F
Sbjct: 353 TLRQRQRDALAEAKGWLEVETGSREAGDLILLAERLRLAGATLDRITGRGGVEDMLDTLF 412

Query: 434 SKFCIGK 440
            +FCIGK
Sbjct: 413 GRFCIGK 419


>gi|89074711|ref|ZP_01161169.1| tRNA modification GTPase [Photobacterium sp. SKA34]
 gi|89049475|gb|EAR55036.1| tRNA modification GTPase [Photobacterium sp. SKA34]
          Length = 455

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 164/458 (35%), Positives = 245/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      + IIR+SGP   +V   +  ++    R A    F   DG  
Sbjct: 1   MNQHIDTIVAQATPPGRGGVGIIRVSGPKAKEVALAVAGRELK-TRYAEYLPFKNEDGTA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F  P SFTGED  E   HGG  +++ ++  + K+  +R A PGEFS RAF N
Sbjct: 60  LDQGIALFFKGPNSFTGEDVLELQGHGGPVLMDMMIRRILKIDGIRAARPGEFSERAFMN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + + + + G  S+   + ++ L H+R F+EA +DF E
Sbjct: 120 DKLDLAQAEAIADLIDASSEEAAKSAFKSLQGAFSTKVNELVEALIHLRIFVEAAIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  +V  D+  + + +++   +   G I+R G K+VI G  NAGKSSL NAL+
Sbjct: 180 EE-IDFLSDGKVGGDLNGIIDRLNAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALS 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            KD AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+ +AD
Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWDEIAHAD 298

Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYT----EEYDHLI-- 343
            +L +      +    KEI        P ++    I  K++L    T         LI  
Sbjct: 299 RVLFMVDGTTTDATDPKEIWPDFIERLPADMGLTVIRNKAELTGEQTGICHANNPTLIRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           S+ TG+G++ L   +K  +            + +RHL  L +   +L +     E     
Sbjct: 359 SARTGDGVDALREHLKQCMGFS-GTTEGGFMARRRHLDALERAAEHLAIGKEQLEGFMAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I+AE LRLA   L +ITG    + LL  IF+ FCIGK
Sbjct: 418 EILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|297276443|ref|XP_001114421.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like,
           partial [Macaca mulatta]
          Length = 330

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/288 (44%), Positives = 183/288 (63%), Gaps = 2/288 (0%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGPS       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPSSGHALRILTAARDLPPARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPRSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQADIEVRALEVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRA 322


>gi|21672311|ref|NP_660378.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|2495118|sp|Q44633|MNME_BUCAP RecName: Full=tRNA modification GTPase mnmE
 gi|1369898|dbj|BAA12845.1| thiophene and furan oxidation protein [Buchnera aphidicola]
 gi|2827009|gb|AAC38101.1| tRNA methyltransferase [Buchnera aphidicola]
 gi|21622910|gb|AAM67589.1| thiophene and furan oxidation protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 456

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 177/461 (38%), Positives = 266/461 (57%), Gaps = 35/461 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A  T    SA+ I+R+SG    QV  F    K P PR A+   FF    ++LD+G+
Sbjct: 5   DTIIAQVTCPGKSAVGILRVSGIHANQVA-FAVLGKIPKPRFATYSKFFDESKKVLDEGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL--RLANPGEFSRRAFENGKI 123
            + FP+P S TGED  E   HG   +++ +++ +  + N+  R+A PGEF +RAF NGKI
Sbjct: 64  SLWFPAPFSLTGEDVLELQGHGNPFIMDLLIKRILCLKNIKIRIAQPGEFCQRAFLNGKI 123

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE- 182
           DL++AE++ DLI+SETE   R S+  + G  S    + I KL   R+ IEA +DFSEE  
Sbjct: 124 DLIQAEAIDDLINSETESVVRASLNSLHGNFSFYIQKIIKKLIEFRTNIEASIDFSEENI 183

Query: 183 ----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
               ++   S+ E LND  FLK  I + +S+G L   IR   +IVI+G  NAGKSSL N 
Sbjct: 184 DFDFNIFIMSNFEKLND-KFLK--IKNIVSEGSL---IREAKRIVIVGPPNAGKSSLLNV 237

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L+ +D AIVTD+PGTTRDVL  ++++ G   +I DTAG+RET+D +EK GI+R++  ++N
Sbjct: 238 LSCRDRAIVTDLPGTTRDVLYENINIHGISCEIIDTAGLRETEDKIEKIGIQRSWEMIKN 297

Query: 299 ADLILLLK------EINSKKEISFPKNI------DFIFIGTKSDLYSTYT--EEYDHL-- 342
           +D +L +       E   K  I F K I      +  F+  K+DL   +    + ++L  
Sbjct: 298 SDHVLYVMDKTISLEDQKKTSIQFMKQISSYNIQEVTFVLNKNDLVEDFCGITKIENLLF 357

Query: 343 --ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KD 399
             IS+ TG+G++ L   + +   +K ++  F   + +RH++ +  +   L  A  N  K 
Sbjct: 358 ISISALTGQGIDILKKHLSNRQKDKSQEGLF--IARRRHIHQIDLSYCELLKAQKNWLKY 415

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++++AE+L + +  LG+ITG      LL  IFS FCIGK
Sbjct: 416 KNIELLAESLNIINKLLGEITGEFTSSDLLKRIFSTFCIGK 456


>gi|83649688|ref|YP_438123.1| tRNA modification GTPase TrmE [Hahella chejuensis KCTC 2396]
 gi|123529917|sp|Q2S6M6|MNME_HAHCH RecName: Full=tRNA modification GTPase mnmE
 gi|83637731|gb|ABC33698.1| tRNA modification GTPase TrmE [Hahella chejuensis KCTC 2396]
          Length = 454

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 156/426 (36%), Positives = 238/426 (55%), Gaps = 41/426 (9%)

Query: 43  PFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102
           P PR A    FF  +G  LD G+ ++F +P SFTGED  EF  HGG  V++ +++ +  +
Sbjct: 42  PKPRHAHYSPFFNEEGDTLDSGIALLFIAPNSFTGEDVVEFQGHGGPVVLDILVKRIVSL 101

Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162
              RLA PGEFS RAF N K+DL++AE++ADLI + +E     +M  + G+ S      I
Sbjct: 102 -GARLARPGEFSERAFMNDKLDLVQAEAIADLIEATSEQAAHSAMRSLQGQFSKEIENLI 160

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
           + L  +R ++EA +DF EEE +   S  +VLND+  L +   S  +  K G ++R G  +
Sbjct: 161 ESLIQLRIYVEAAIDFPEEE-IDFLSDGKVLNDLDTLLSQTQSVFASAKQGALMREGMTV 219

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           VI G  NAGKSSL NALA ++ AIVT+I GTTRDVL   + ++G  + I DTAG+R++DD
Sbjct: 220 VIAGRPNAGKSSLLNALAGRESAIVTEIEGTTRDVLREHIHIDGMPLHIVDTAGLRDSDD 279

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
           +VEK GI+R + E++ AD IL L +     E+S P+ I         + Y+   E +DH+
Sbjct: 280 VVEKIGIERAWKEIDQADRILFLVDATQTNEVS-PERI-------WPEFYA-RIEHHDHI 330

Query: 343 --------------------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                                     +S+  G G++ L   +K+ +  +         + 
Sbjct: 331 TVVRNKIDLSEEAQGIDLSLSHPVIRLSAKAGNGIDVLREHLKACVGFE-SHAEGGFMAR 389

Query: 377 KRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFS 434
           +RHL  L+   +++++A   L   + G +++AE+LR+A  +L +ITG    + LL  IFS
Sbjct: 390 RRHLEALTVAEKHIQLAKQQLLSANAG-ELVAEDLRVAQNALSEITGAFTSDDLLGRIFS 448

Query: 435 KFCIGK 440
            FCIGK
Sbjct: 449 SFCIGK 454


>gi|190348630|gb|EDK41117.2| hypothetical protein PGUG_05215 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 503

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 168/478 (35%), Positives = 257/478 (53%), Gaps = 52/478 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFG-LDGRILDKG 64
           TI+A+ST    +AI ++R+SG     + + + KK+ +P PR A++R  +    G  LD  
Sbjct: 34  TIYALSTKMGRAAIGVVRISGSQSRYIYKKLTKKESEPLPRVAAVRNLYSSRSGVQLDNA 93

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFSRRAF 118
           L + F +P ++TGED  E H+HGG AVV  +L+ + ++        +R A  GEFSRRAF
Sbjct: 94  LTLFFQAPHTYTGEDLLELHLHGGTAVVQSVLKAIEELHQPEKQIFIRYAENGEFSRRAF 153

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK DL+E E + ++I +ETE QR  S+  M G  S L+  W  ++    + +   +DF
Sbjct: 154 INGKYDLMEIEGIREMIDAETESQRLASLASMDGSNSGLFRSWRQEIARNVALLTTVIDF 213

Query: 179 SEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
            E+ D++  S    +V  +I  L++ I  ++ + +  +++ NG K+ +LG  NAGKSSL 
Sbjct: 214 GEDHDIEEVSQLFGQVGANIHQLESSIREYLYRAERSQVLLNGIKLSLLGPPNAGKSSLL 273

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKRTFL 294
           N LA K+ AIV++I GTTRD++ I LD+ GY + I DTAGIR  E  D +EKEGIKR   
Sbjct: 274 NCLASKNAAIVSEIAGTTRDIIDIPLDINGYKIIIGDTAGIRSLEDADTIEKEGIKRAKA 333

Query: 295 EVENADLILLLKEINS-----------KKEISFPKNIDFIFIGTKSDLYS-----TYTEE 338
               +D++LL+  ++            K+     K I  +F   K DL +        E+
Sbjct: 334 ASLTSDIVLLVLPVDKPVVDDSFLEHIKQLTQHKKRIIVVF--NKRDLSNETLNKNLLEK 391

Query: 339 YD----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL-----YHL 383
           Y           H +S  TGEG++ L   + S   N     P  + +  R L      H 
Sbjct: 392 YSRVFGIEKPLFHFVSCNTGEGIDSLAKSLVSEFQNVTTSDPIIVSTRTRDLLVNDVLHG 451

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440
            +  +Y      +++D  L   +E+LR +   +GKITG  V VE++L I+FS FCIGK
Sbjct: 452 FKEFQYWR----DQEDVVL--ASESLRQSVEGIGKITGDAVGVEEILGIVFSSFCIGK 503


>gi|15604593|ref|NP_221111.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str. Madrid E]
 gi|6647889|sp|Q9ZCI1|MNME_RICPR RecName: Full=tRNA modification GTPase mnmE
 gi|3861288|emb|CAA15187.1| POSSIBLE THIOPHENE AND FURAN OXIDATION PROTEIN THDF (thdF)
           [Rickettsia prowazekii]
 gi|292572404|gb|ADE30319.1| tRNA modification GTPase TrmE [Rickettsia prowazekii Rp22]
          Length = 445

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 260/451 (57%), Gaps = 23/451 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61
           ETIFA S+    + +++ R+SGP   +V + +  +K   PR   L Y+  +       ++
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKDFKPR---LMYYQQIIVPETNELI 58

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  +++ F  P SFTGED  E H HG  A+   ++  L  + ++RLA  GEF++RAF N 
Sbjct: 59  DNAMVVYFKLPNSFTGEDVVEIHTHGSKAISIMLINTLLNIADIRLAEAGEFTKRAFLNN 118

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K DL  AE +ADLI++ET MQ R ++   +G L  LY +W ++L  I S +EA +DF  +
Sbjct: 119 KFDLTAAEGIADLINAETIMQHRQAVRQANGGLKELYNKWRNQLLKIISLLEAYIDFP-D 177

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+      +V N    + N+IS++++  + GE++ NG K+ I+G  N GKSSL N L +
Sbjct: 178 EDIPESILNDVNNTHKNIVNEISNYLNDNRRGELLNNGLKLAIIGPPNTGKSSLLNFLMQ 237

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300
           +++AIV++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + A+
Sbjct: 238 RNIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRTESTDIIEQEGIKRAINSAKTAN 297

Query: 301 LILLL---KEINS--KKEISFPKNIDFIFIGTKSDLY---STYTEE--YDHL-ISSFTGE 349
           + +++   ++++S    +I+   + + I I  K DL     T+  E  Y  L +S     
Sbjct: 298 IKIVMFDAEKLDSSINNDITGLIDENTIVIINKIDLIEPNKTFAIENRYKCLRVSVKNNI 357

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            L  ++  I++I  N          +++RH ++L Q + +L   +L   D  L +  E++
Sbjct: 358 ALSNILKNIENIAENLAGVTETPYITNQRHRHYLKQALSHLIDFNL---DNDLVLATEDI 414

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R+    +G ITG ++VE++L+ IF  FCIGK
Sbjct: 415 RMTVRCIGLITGVINVEEILNEIFKNFCIGK 445


>gi|32034848|ref|ZP_00134954.1| COG0486: Predicted GTPase [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126208954|ref|YP_001054179.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae L20]
 gi|166200465|sp|A3N2D8|MNME_ACTP2 RecName: Full=tRNA modification GTPase mnmE
 gi|126097746|gb|ABN74574.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 452

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 163/458 (35%), Positives = 253/458 (55%), Gaps = 29/458 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           K+TI A +T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G
Sbjct: 2   KDTIVAQATPIGRGGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-I 179

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LND +   N +     QG    I+R G K+VI G  NAGKSSL NALA 
Sbjct: 180 DFLADGKIEGHLNDTIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAG 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVT+I GTTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD 
Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADH 296

Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----IS 344
           +LL+ +   +   +F           P++I    I  K DL       +E D      +S
Sbjct: 297 VLLMIDSTEQTAEAFKTEWADFLAKLPQSIPVTVIRNKVDLSGEAEGLQELDGFTLIRLS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402
           + T  G++ L   +K  +  +         + +RHL  L     +LE     L +   G 
Sbjct: 357 AQTKVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG- 414

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 415 ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|90194066|gb|ABD92594.1| ThdF [Pasteurella multocida]
          Length = 436

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 243/443 (54%), Gaps = 41/443 (9%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            I I+R+SGP   +V   +  K  P PR A    F   DG +LD+G+ + F +P SFTGE
Sbjct: 7   GIGILRVSGPKAVEVAHAVLGKC-PKPRMADYLPFKDSDGNVLDQGIALYFKAPHSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  V++ +L+ + ++  LRLA PGEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAIADLIDAS 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LND
Sbjct: 126 SEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAHLND 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+   + +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTR
Sbjct: 185 IITQLDHVR---SEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL----------- 304
           DVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD ILL           
Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDSTEADNQD 301

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDL------------YSTYTEEYDHLISSFTGEGLE 352
           L+++ S+     P NI    +  K+DL            Y+  T      +S+ T +G+ 
Sbjct: 302 LEKVRSEFLTKLPSNIPVTIVRNKADLSGENEGIVEQNGYTVIT------LSAKTQQGVA 355

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLR 410
            L   +K  +  +   +     + +RHL  L Q   +L+     L +   G +++AE LR
Sbjct: 356 LLREHLKQSMGYQ-TNMEGGFLARRRHLEALEQAATHLQQGHVQLTQFYAG-ELLAEELR 413

Query: 411 LASVSLGKITGCVDVEQLLDIIF 433
                L +ITG    + LL  IF
Sbjct: 414 RVQNHLSEITGQFTSDDLLGNIF 436


>gi|90194136|gb|ABD92629.1| ThdF [Pasteurella multocida subsp. gallicida]
          Length = 436

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 243/443 (54%), Gaps = 41/443 (9%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            I I+R+SGP   +V   +  K  P PR A    F   DG +LD+G+ + F +P SFTGE
Sbjct: 7   GIGILRVSGPKAVEVAHAVLGKC-PKPRMADYLPFKDSDGNVLDQGIALYFKAPHSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  V++ +L+ + ++  LRLA PGEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAIADLIDAS 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LND
Sbjct: 126 SEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAHLND 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+   + +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTR
Sbjct: 185 IITQLDHVR---SEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL----------- 304
           DVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD ILL           
Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDSTEADNQD 301

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDL------------YSTYTEEYDHLISSFTGEGLE 352
           L+++ S+     P NI    +  K+DL            Y+  T      +S+ T +G+ 
Sbjct: 302 LEKVRSEFLTKLPSNIPVTVVRNKADLSGENEGIVEQNGYTVIT------LSAKTQQGVA 355

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLR 410
            L   +K  +  +   +     + +RHL  L Q   +L+     L +   G +++AE LR
Sbjct: 356 LLREHLKQSMGYQ-TNMEGGFLARRRHLEALEQAATHLQQGHVQLTQFYAG-ELLAEELR 413

Query: 411 LASVSLGKITGCVDVEQLLDIIF 433
                L +ITG    + LL  IF
Sbjct: 414 RVQNHLSEITGQFTSDDLLGNIF 436


>gi|146412448|ref|XP_001482195.1| hypothetical protein PGUG_05215 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 503

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 168/478 (35%), Positives = 257/478 (53%), Gaps = 52/478 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFG-LDGRILDKG 64
           TI+A+ST    +AI ++R+SG     + + + KK+ +P PR A++R  +    G  LD  
Sbjct: 34  TIYALSTKMGRAAIGVVRISGSQSRYIYKKLTKKESEPLPRVAAVRNLYSSRSGVQLDNA 93

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFSRRAF 118
           L + F +P ++TGED  E H+HGG AVV  +L+ + ++        +R A  GEFSRRAF
Sbjct: 94  LTLFFQAPHTYTGEDLLELHLHGGTAVVQSVLKAIEELHQPEKQIFIRYAENGEFSRRAF 153

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK DL+E E + ++I +ETE QR  S+  M G  S L+  W  ++    + +   +DF
Sbjct: 154 INGKYDLMEIEGIREMIDAETESQRLASLASMDGSNSGLFRSWRQEIARNVALLTTVIDF 213

Query: 179 SEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
            E+ D++  S    +V  +I  L++ I  ++ + +  +++ NG K+ +LG  NAGKSSL 
Sbjct: 214 GEDHDIEEVSQLFGQVGANIHQLESSIREYLYRAERSQVLLNGIKLSLLGPPNAGKSSLL 273

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKRTFL 294
           N LA K+ AIV++I GTTRD++ I LD+ GY + I DTAGIR  E  D +EKEGIKR   
Sbjct: 274 NCLASKNAAIVSEIAGTTRDIIDIPLDINGYKIIIGDTAGIRSLEDADTIEKEGIKRAKA 333

Query: 295 EVENADLILLLKEINS-----------KKEISFPKNIDFIFIGTKSDLYS-----TYTEE 338
               +D++LL+  ++            K+     K I  +F   K DL +        E+
Sbjct: 334 ASLTSDIVLLVLPVDKPVVDDSFLEHIKQLTQHKKRIIVVF--NKRDLSNETLNKNLLEK 391

Query: 339 YD----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL-----YHL 383
           Y           H +S  TGEG++ L   + S   N     P  + +  R L      H 
Sbjct: 392 YSRVFGIEKPLFHFVSCNTGEGIDSLAKSLVSEFQNVTTSDPIIVSTRTRDLLVNDVLHG 451

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440
            +  +Y      +++D  L   +E+LR +   +GKITG  V VE++L I+FS FCIGK
Sbjct: 452 FKEFQYWR----DQEDVVL--ASESLRQSVEGIGKITGDAVGVEEILGIVFSSFCIGK 503


>gi|328950860|ref|YP_004368195.1| tRNA modification GTPase mnmE [Marinithermus hydrothermalis DSM
           14884]
 gi|328451184|gb|AEB12085.1| tRNA modification GTPase mnmE [Marinithermus hydrothermalis DSM
           14884]
          Length = 437

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 157/444 (35%), Positives = 249/444 (56%), Gaps = 23/444 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           +TI A++T     AI ++RLSGP   +V   + +   P       R+ +G       G +
Sbjct: 8   DTIAAIATPPGKGAIGVVRLSGPQALEVAARLWRGADPRTLPGG-RFSYGRVVDPETGEV 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GLL+VF +P S+TG+D+ EF VHG  AV+  +LE   +    R ANPGE++ RA+ N
Sbjct: 67  LDEGLLLVFRAPRSYTGQDAVEFQVHGSPAVLRRVLEACLQA-GARPANPGEYTLRAYLN 125

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++  LI +E++  RR ++ G+S  LS+       +L  + + I+A LD+ E
Sbjct: 126 GRMDLAQAEAVLALIEAESDAARRQALRGLSRALSTKIEALAQRLLDLLAHIQALLDYPE 185

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  V+   ++ V+  +L    +I   ++    G +  +G +I ++G  NAGKSSL NAL 
Sbjct: 186 E-GVEPHEAERVIAQVL---AEIERLLATTAAGRVAAHGARITLVGAPNAGKSSLLNALL 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTDIPGTTRD L   L++ G  V   DTAG+RET+D VE+ G++R       AD
Sbjct: 242 GYDRAIVTDIPGTTRDYLEAPLEIGGVPVIAVDTAGVRETEDAVERAGVERALELAREAD 301

Query: 301 LILLLKEINSKKEISFPKNIDF---IFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELIN 356
           LIL L +    K    P  + +   + + TK+DL + + E+ ++L +SS TG GLE L  
Sbjct: 302 LILFLADRTQPK--PTPPELPWERTLKVATKADLPALW-EDPEYLSVSSKTGAGLEALRR 358

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
            I++ L     +    I +++RH   L +   +L    L  +    D++  +L+ A  +L
Sbjct: 359 AIRTRLLGGLSEGEVWI-ANERHAEALREARAHL----LEARHAPEDLMGLSLQAAVEAL 413

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            +I G    E+++D +F  FC+GK
Sbjct: 414 NRILGKDVPEEVVDRVFRNFCVGK 437


>gi|190171176|gb|ACE63658.1| ThdF [Citrobacter koseri]
          Length = 439

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 152/435 (34%), Positives = 240/435 (55%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTALDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   + 
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 187 GVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +   
Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+D+       +E   H    +S+ TGEG++ L N +K 
Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +      +     + +RHL  L++   +L+   + L     G +++AE LRLA  +L +
Sbjct: 367 SMGFD-TNMEGGFLARRRHLQALAEAAEHLQQGKSQLLGAWAG-ELLAEELRLAQQALSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 425 ITGEFTSDDLLGRIF 439


>gi|33151312|ref|NP_872665.1| tRNA modification GTPase TrmE [Haemophilus ducreyi 35000HP]
 gi|46577376|sp|Q7U344|MNME_HAEDU RecName: Full=tRNA modification GTPase mnmE
 gi|33147532|gb|AAP95054.1| tRNA modification GTPase TrmE [Haemophilus ducreyi 35000HP]
          Length = 452

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 253/459 (55%), Gaps = 31/459 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      + I+R+SGP   QV + I  K    PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATPIGRGGVGILRVSGPLAQQVAQEILGKTLT-PRLAHYLPFKDNDGEILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILTINGIRIARTGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D++ ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDQVIYLRTYVEAAIDFPDEE-I 179

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LNDI+   + +++   + K G I+R G K VI G  NAGKSSL NALA 
Sbjct: 180 DFLADGKIERHLNDII---HQLAAVRQEAKQGSILREGMKAVIAGRPNAGKSSLLNALAG 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVT+I GTTRDVL   + L+G  + I DTAG+RE  D VEK GI+R + E+  AD 
Sbjct: 237 REAAIVTNIAGTTRDVLHEHIHLDGMPLHIIDTAGLREASDEVEKIGIQRAWNEIVAADH 296

Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEEYDHL-------I 343
           +LL+ +   +   +F           P  +    I  K DL S   E    L       +
Sbjct: 297 VLLMLDSTEQSAYAFKTEWAEFLAKLPPKMPITIIRNKVDL-SGEVEGLTQLDGFTLIRL 355

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401
           S+ T  G++ L   +K+ +  +         + +RHL  L    ++L      L +   G
Sbjct: 356 SAQTKIGVDVLREHLKTSMGYQ-SSTEGGFLARRRHLQALETAAKHLTQGHIQLTQFFAG 414

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRL   +L +ITG    + LL  IFS FCIGK
Sbjct: 415 -ELLAEELRLVQNTLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|89092260|ref|ZP_01165214.1| GTP-binding protein in thiophene and furan oxidation
           [Oceanospirillum sp. MED92]
 gi|89083348|gb|EAR62566.1| GTP-binding protein in thiophene and furan oxidation
           [Oceanospirillum sp. MED92]
          Length = 455

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 162/454 (35%), Positives = 247/454 (54%), Gaps = 24/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SGP    +   + K +   PR A    FF  + + +D+G+
Sbjct: 7   DTITAQATPPGRGGVGIVRVSGPLAKAISTQVLKTELK-PRYAYYGPFFDSNDQEIDQGI 65

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +V+ IL  + ++   RLANPGEFS RAF N K+DL
Sbjct: 66  ALYFPGPNSFTGEDVLELQGHGGPVIVDLILNRVKEL-GARLANPGEFSERAFLNDKLDL 124

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI S +E   R ++  + GE S    + ++ L ++R ++EA +DF EEE + 
Sbjct: 125 AQAEAIADLIDSSSEQAARCAIRSLQGEFSKRIHELVEALINLRIYVEAAIDFPEEE-ID 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +VL+D+  +   + +  ++ K G ++R G  +VI G  NAGKSSL NALA ++ A
Sbjct: 184 FLADGKVLSDLKSVLGKVEAVQAEAKQGSLLREGMSVVIAGRPNAGKSSLLNALAGRETA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+  AD +LL+
Sbjct: 244 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAPDEVERIGINRAWEEIRKADRVLLM 303

Query: 306 KEINSKKE-----------ISFPKNIDFIFIGTKSDLYST---YTEEYDHLISSFTGE-- 349
            +  S +               P++     I  K+DL        E +DH   + + +  
Sbjct: 304 VDSQSTQTDDPEQIWPEFVHQLPESSRITVIRNKADLSGETIGQREAHDHTTITLSAKEQ 363

Query: 350 -GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIA 406
            G++ L N +K  +            + +RHL  L +    L+  +  L     G +++A
Sbjct: 364 SGVDLLRNHLKETMGFS-STTEGGFMARRRHLDALERAHELLQTGLDQLEYNGAG-ELLA 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+LR A  SL +ITG    + LL  IFS FCIGK
Sbjct: 422 EDLRQAQNSLNEITGEFTPDDLLGRIFSSFCIGK 455


>gi|190171174|gb|ACE63657.1| ThdF [Citrobacter koseri]
          Length = 439

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 152/435 (34%), Positives = 240/435 (55%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTALDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   + 
Sbjct: 128 SSEQAARSALNSLQGAFSARVNNLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 187 GVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +   
Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+D+       +E   H    +S+ TGEG++ L N +K 
Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +      +     + +RHL  L++   +L+   + L     G +++AE LRLA  +L +
Sbjct: 367 SMGFD-TNMEGGFLARRRHLQALAEAAEHLQQGKSQLLGAWAG-ELLAEELRLAQQALSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 425 ITGEFTSDDLLGRIF 439


>gi|190171180|gb|ACE63660.1| ThdF [Enterobacter aerogenes]
          Length = 439

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 155/438 (35%), Positives = 241/438 (55%), Gaps = 29/438 (6%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG     V + +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKARDVAQAVLGKL-PKPRYADYLPFKDADGTPLDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P +R+ANPGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGVRIANPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   LN
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           D++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTT
Sbjct: 187 DVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 243

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +
Sbjct: 244 RDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTSAV 303

Query: 315 S-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINK 357
                        P  +    +  K+D+       +E   H    +S+ TGEG+E L N 
Sbjct: 304 DPAEIWPDFIERLPAKLPITVVRNKADVTGEALGLSEVNGHSLIRLSARTGEGVEVLRNH 363

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVS 415
           +K  +      +     + +RHL  L     +L+   A L     G +++AE LRL+  +
Sbjct: 364 LKQSMGFD-TNMEGGFLARRRHLQALETAADHLQQGKAQLLGAWAG-ELLAEELRLSQQA 421

Query: 416 LGKITGCVDVEQLLDIIF 433
           L +ITG    + LL  IF
Sbjct: 422 LSEITGEFTSDDLLGRIF 439


>gi|52673270|emb|CAH56508.1| putative tRNA modification GTPase trmE [Bacillus amyloliquefaciens
           FZB42]
          Length = 462

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 164/462 (35%), Positives = 263/462 (56%), Gaps = 31/462 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LDG 58
           +TI A+ST     AI+I+RLSGP   ++ + + K  K K      S    +G       G
Sbjct: 5   DTIAAISTPMGEGAIAIVRLSGPEAVKIADKMYKGPKGKTLSSAESHTIHYGHIADSTTG 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           RI+++ ++ V  +P +FT ED  E + HGGI  VN +L+ LA     RLA PGEF++RAF
Sbjct: 65  RIIEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    ++M  M G LS+L  +  D+L    + +E ++D+
Sbjct: 124 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRDELLETLAHVEVNIDY 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     +K +I + +   + G+I+R G   VI+G  N GKSSL N+
Sbjct: 184 PEYDDVEEMTHQLLVEKASGVKKEIEALLRTSEQGKILREGLSTVIIGRPNVGKSSLLNS 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 244 LVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 303

Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------- 342
           ADLILL+  +N  +E+S          + +D I I  K+DL +    E    L       
Sbjct: 304 ADLILLV--LNHSEELSEEDVKLFEAVEGMDVIVIMNKTDLEAKIDAERVKELAKGRPVV 361

Query: 343 -ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EK 398
             S    EG+++L   I+S+  +   +    +  S+ RH+  L Q  + ++ A LN  E+
Sbjct: 362 TTSLLKEEGIQDLEEAIQSLFYTGAIESGDLTYVSNTRHISILHQAKQAIDDA-LNGIEQ 420

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  +D++  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 421 DVPIDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 462


>gi|154688207|ref|YP_001423368.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens FZB42]
 gi|308175809|ref|YP_003922514.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens DSM 7]
 gi|205829057|sp|A7ZAW1|MNME_BACA2 RecName: Full=tRNA modification GTPase mnmE
 gi|154354058|gb|ABS76137.1| TrmE [Bacillus amyloliquefaciens FZB42]
 gi|307608673|emb|CBI45044.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens DSM 7]
 gi|328555785|gb|AEB26277.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens TA208]
 gi|328914174|gb|AEB65770.1| tRNA modification GTPase mnmE [Bacillus amyloliquefaciens LL3]
          Length = 459

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 164/462 (35%), Positives = 263/462 (56%), Gaps = 31/462 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LDG 58
           +TI A+ST     AI+I+RLSGP   ++ + + K  K K      S    +G       G
Sbjct: 2   DTIAAISTPMGEGAIAIVRLSGPEAVKIADKMYKGPKGKTLSSAESHTIHYGHIADSTTG 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           RI+++ ++ V  +P +FT ED  E + HGGI  VN +L+ LA     RLA PGEF++RAF
Sbjct: 62  RIIEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    ++M  M G LS+L  +  D+L    + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRDELLETLAHVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     +K +I + +   + G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEYDDVEEMTHQLLVEKASGVKKEIEALLRTSEQGKILREGLSTVIIGRPNVGKSSLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 241 LVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300

Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------- 342
           ADLILL+  +N  +E+S          + +D I I  K+DL +    E    L       
Sbjct: 301 ADLILLV--LNHSEELSEEDVKLFEAVEGMDVIVIMNKTDLEAKIDAERVKELAKGRPVV 358

Query: 343 -ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EK 398
             S    EG+++L   I+S+  +   +    +  S+ RH+  L Q  + ++ A LN  E+
Sbjct: 359 TTSLLKEEGIQDLEEAIQSLFYTGAIESGDLTYVSNTRHISILHQAKQAIDDA-LNGIEQ 417

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  +D++  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 418 DVPIDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 459


>gi|118444248|ref|YP_876979.1| tRNA modification GTPase TrmE [Clostridium novyi NT]
 gi|166200476|sp|A0PX77|MNME_CLONN RecName: Full=tRNA modification GTPase mnmE
 gi|118134704|gb|ABK61748.1| tRNA modification GTPase TrmE [Clostridium novyi NT]
          Length = 459

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 177/463 (38%), Positives = 265/463 (57%), Gaps = 30/463 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP--RKASLRYFFGLDG 58
            E +TI A++T    S +SIIR+SG     +    F  K  +     R  S+RY F +D 
Sbjct: 2   KEFDTIAAIATNLGESGVSIIRVSGDKALSIVSSIFTGKNDRKLDDIRTYSMRYGFIIDK 61

Query: 59  RI---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
                LD+ ++     P SFT ED  E + HGG+ V   ILEE+      RLA+PGEF++
Sbjct: 62  DTKEKLDEVIVSYMKGPRSFTAEDVVEINCHGGVVVTKRILEEVV-AAGARLASPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI+++TE+  + ++E   G+LS   G+  +KL  I + IEA 
Sbjct: 121 RAFLNGRIDLSQAEAVIDLINAKTELSAKSALEQSEGKLSREIGKIRNKLLEIIASIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E+ D++  +S++    +  L ++I S +     G+I+R G   VI+G  N GKSSL
Sbjct: 181 VDYPED-DLEEVTSEKGRESVSKLLDEIDSLLDHADEGKILREGLNTVIVGKPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  +  AIVTD+PGTTRDV+   + ++G  +KI DTAGIR+TDD+VEK G++++  +
Sbjct: 240 LNALLMETRAIVTDVPGTTRDVIEEYMSIDGIPIKIIDTAGIRDTDDVVEKIGVEKSREK 299

Query: 296 VENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYSTYTEE--------YD 340
           + N+DL +L+ + NS       K+ I+F K+  +I +  K DL S   +E        Y 
Sbjct: 300 INNSDLTVLVLD-NSRGLDDEDKEIINFIKDKKYIVLLNKMDLESKIDKEALKELNSKYI 358

Query: 341 HLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             IS+ TG GL++    IK +  S K       I ++ RH   L +    LE AS N  D
Sbjct: 359 IEISAKTGSGLDKFKEVIKELFFSGKVASKDVMI-TNTRHKEALIRAKESLE-ASKNALD 416

Query: 400 C--GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D+ + +LR A  SLG+I G    E ++D IFSKFC+GK
Sbjct: 417 NTFAIDLASIDLRNAWKSLGEINGDTVEEDIIDKIFSKFCLGK 459


>gi|295697832|ref|YP_003591070.1| tRNA modification GTPase TrmE [Bacillus tusciae DSM 2912]
 gi|295413434|gb|ADG07926.1| tRNA modification GTPase TrmE [Bacillus tusciae DSM 2912]
          Length = 461

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 156/458 (34%), Positives = 255/458 (55%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
           ++ I AV T    + I++IR+SGP C +V E I + ++      S R  +G         
Sbjct: 6   EDVIAAVGTAPGEAGIAVIRVSGPGCARVVERIFRGRQSLQDAPSHRMVYGAVVDPDTAE 65

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ L +   +P S+TGED  E H HGG AVV  +L  + +    R A PGEF++RAF 
Sbjct: 66  VLDEVLAVRMQAPRSYTGEDVVEIHTHGGSAVVGRVLNAVVR-AGARPAEPGEFTKRAFL 124

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++ DLI S+T+  RRL++E + G LS+   Q  + L  + + IE  +D+ 
Sbjct: 125 NGRLDLSQAEAVIDLIRSKTDAARRLALEQLKGGLSTRVKQMREILLDVMAQIEVTIDYP 184

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  DV++ + +++   +  ++  I   ++  ++G ++R G +  I+G  N GKSSL NAL
Sbjct: 185 EH-DVEDVTIEQIREAVDQVREQIDELLASSRVGRLVREGVRTAIVGRPNVGKSSLLNAL 243

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A ++ AIVT IPGTTRDV+   + + G   +I DTAGIR T+D VE+ G++R+   V  A
Sbjct: 244 AGRERAIVTAIPGTTRDVVDEWIHVRGVAFQILDTAGIRTTEDEVERIGVERSLKWVAEA 303

Query: 300 DLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE------YDH---LIS 344
           DL+L + + +S  E      +   K+  F+ +  K DL      +        H    +S
Sbjct: 304 DLVLCVLDGSSPLEKEDLELLDRIKDRPFLVVVNKIDLPGRLAGDGRLEKLPQHRMVRVS 363

Query: 345 SFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           + TG+G++EL +++ + +L  +       + ++ RH+  L +    L+ A     +   +
Sbjct: 364 ARTGDGVQELADRMAQVVLKGEGVSASSCMVTNVRHMALLEEAREDLDAAERAVSEGWTV 423

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+ A +LR A   LG I G    E+LL+ IFS+FC+GK
Sbjct: 424 DVAAVDLRAAWEHLGDILGERAGEELLNRIFSQFCLGK 461


>gi|90194138|gb|ABD92630.1| ThdF [Pasteurella multocida subsp. septica]
          Length = 433

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 242/433 (55%), Gaps = 29/433 (6%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            I I+R+SGP   +V   +  K  P PR A    F   DG +LD+G+ + F +P SFTGE
Sbjct: 7   GIGILRVSGPKAVEVAHAVLGKC-PKPRMADYLPFKDSDGSVLDQGIALYFKAPHSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  V++ +L+ + ++  LRLA PGEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAIADLIDAS 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LND
Sbjct: 126 SEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAHLND 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+   + +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTR
Sbjct: 185 IITQLDHVR---SEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL----------- 304
           DVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD ILL           
Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDSTEADNQD 301

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---SSFTGEGLEELINKI 358
           L+++ S+     P NI    +  K+DL        E++ + +   S+ T +G+  L   +
Sbjct: 302 LEKVRSEFLTKLPSNIPVTIVRNKADLSGEKEGIVEQHGYTVITLSAKTQQGVALLREHL 361

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416
           K  +  +   +     + +RHL  L Q   +L+     L +   G +++AE LR     L
Sbjct: 362 KHSMGYQ-TNMEGGFLARRRHLEALEQAATHLQQGHVQLTQFYAG-ELLAEELRRVQNHL 419

Query: 417 GKITGCVDVEQLL 429
            +ITG    + LL
Sbjct: 420 SEITGQFTSDDLL 432


>gi|332143488|ref|YP_004429226.1| tRNA modification GTPase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553510|gb|AEB00229.1| tRNA modification GTPase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 462

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 156/461 (33%), Positives = 246/461 (53%), Gaps = 33/461 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SGP    + E +   +   PR A+   F   +  ++D+G+
Sbjct: 9   DTITAQATAPGRGGVGIVRVSGPKAKAIAEALVPSELT-PRLATYTPFVDANKSVIDQGI 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ +    + RLA+PGEFS +AF N K+DL
Sbjct: 68  ALFFKGPNSFTGEDVLELQGHGGQVVMDMLIDAVLATGHARLASPGEFSEQAFLNDKLDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + ++   R ++  + GE S+      D++ H+R ++EA +DF EEE + 
Sbjct: 128 AQAEAIADLIDASSKQAARSALRSLQGEFSTQIQTLSDQIVHLRMYVEAAIDFPEEE-ID 186

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++  D+  +   ++    Q K G ++R G ++VI G  NAGKSSL NALA +D A
Sbjct: 187 FLSDGKISGDLSTIMQSLTKVRDQAKQGTLLREGMQVVIAGRPNAGKSSLLNALAGRDSA 246

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  V I DTAG+RE+ D VE+ GI+R +  +  AD +L +
Sbjct: 247 IVTDIAGTTRDVLKEHIHIDGMPVHIIDTAGLRESPDKVEQIGIERAWQAINEADHVLFV 306

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDL-------YSTYTEEYD-HLISSF 346
            +  +   I             P+ I    +  K+DL        S  T++ D  +I+  
Sbjct: 307 VDSTATSVIDPYEIWPEFMARLPQGIPVTVVRNKADLSTLSIGQSSVNTQQGDISVINLS 366

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPS------HKRHLYHLSQTVRYLEMASLNEKDC 400
             EG     + + ++ ++  K + F   +       +RH+  L Q   Y+        D 
Sbjct: 367 AKEG-----SGVDTLKAHLAKTMGFDTTTEGQFIARRRHIDALDQAYSYVSTGEQQLHDA 421

Query: 401 -GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 422 MAGELLAEELRLAHQALCEITGEFTPDDLLGKIFSSFCIGK 462


>gi|91777105|ref|YP_546861.1| tRNA modification GTPase TrmE [Methylobacillus flagellatus KT]
 gi|123078704|sp|Q1GXL7|MNME_METFK RecName: Full=tRNA modification GTPase mnmE
 gi|91711092|gb|ABE51020.1| tRNA modification GTPase trmE [Methylobacillus flagellatus KT]
          Length = 446

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 165/448 (36%), Positives = 252/448 (56%), Gaps = 19/448 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      I ++R+SGPS   + E +     P PR A+   F      ++D+G+
Sbjct: 5   DTIAAIATAPGSGGIGVVRISGPSSRLIAEAVLGHCPP-PRHAAYLAFRDAHALLIDRGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I +P P S+TGED  E   HGG A++  +L+   ++   R A PGEF+RRA+ N K+DL
Sbjct: 64  AIYYPGPHSYTGEDVLELQAHGGPALMQILLKRCLEL-GARQAEPGEFTRRAYLNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++AD+I++ TE   R ++  +SGE S+       KL  +R ++EA LDF EE D+ 
Sbjct: 123 AQAEAVADVINAATEAAARSAVRSLSGEFSARIHSLQQKLVDLRLYVEACLDFPEE-DID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S   V   +  +   + +   + + G ++R G ++V++G  N GKSSL N LA ++VA
Sbjct: 182 FISQGRVAEKLAEVTAGLEAVFREARQGNLLREGLQVVLVGQPNVGKSSLMNQLAGEEVA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT I GTTRD +   + + G  + I+DTAG+RET+D VE+ GI RT+  +ENA + LLL
Sbjct: 242 IVTPIAGTTRDTIKNSIQINGITLHITDTAGLRETNDEVEQHGIARTWRALENAGVALLL 301

Query: 306 KEIN---SKKEIS----FPKNIDFIFIGTKSDLYSTYT--EEYD---HL-ISSFTGEGLE 352
            +      K E S     P+ +  I+I  K DL ST    EE D   H+ +S+ TG+G+ 
Sbjct: 302 VDAAHGIGKVEKSILARLPQFLPKIWIHNKIDLESTPPKIEEQDGETHIHLSARTGDGVH 361

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            L  ++  I   +       + +  RHL  L++   +LE+A+        ++ AE LRLA
Sbjct: 362 LLRQRLLDIAGWQPSGEGVFM-ARSRHLLALNKVRDHLEVAAGRLMQA--ELFAEELRLA 418

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +L  ITG    + LL  IFS+FCIGK
Sbjct: 419 QDALSTITGEFTSDDLLGEIFSRFCIGK 446


>gi|90581133|ref|ZP_01236932.1| tRNA modification GTPase [Vibrio angustum S14]
 gi|90437654|gb|EAS62846.1| tRNA modification GTPase [Vibrio angustum S14]
          Length = 455

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 163/458 (35%), Positives = 244/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      + IIR+SGP   +V   +  ++    R A    F   DG  
Sbjct: 1   MNQHIDTIVAQATPPGRGGVGIIRVSGPKAKEVALAVAGRELK-TRYAEYLPFKNEDGTA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F  P SFTGED  E   HGG  +++ ++  + K+  +R A PGEFS RAF N
Sbjct: 60  LDQGIALFFKGPNSFTGEDVLELQGHGGPVLMDMMIRRILKIDGIRAARPGEFSERAFMN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + + + + G  S+   + ++ L H+R F+EA +DF E
Sbjct: 120 DKLDLAQAEAIADLIDASSEEAAKSAFKSLQGAFSTKVNELVEALIHLRIFVEAAIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  +V  D+  + + +++   +   G I+R G K+VI G  NAGKSSL NAL+
Sbjct: 180 EE-IDFLSDGKVGGDLNGIIDRLNAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALS 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            KD AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+ +AD
Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWDEIAHAD 298

Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYT----EEYDHLI-- 343
            +L +      +    KEI        P ++    I  K++L              LI  
Sbjct: 299 RVLFMVDSTTTDATDPKEIWPDFIERLPADMGLTVIRNKAELTGEQAGICHANNPTLIRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           S+ TG+G++ L   +K  +            + +RHL  L +   +L +     E     
Sbjct: 359 SARTGDGVDALREHLKQCMGFS-GTTEGGFMARRRHLDALERAAEHLAIGKEQLEGFMAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I+AE LRLA   L +ITG    + LL  IF+ FCIGK
Sbjct: 418 EILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|238881895|gb|EEQ45533.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 499

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 166/488 (34%), Positives = 272/488 (55%), Gaps = 54/488 (11%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59
           N  K T+FA+ST    SAI+++R+SGP S +   +     K P  R AS+R  +  +   
Sbjct: 17  NPLKPTVFALSTKFGKSAIAVVRISGPQSKYIYHKLTNSTKPPKNRIASVRKLYSPEPHS 76

Query: 60  -----ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM--PN----LRLA 108
                 LD+ L +  P P+++TGED  E H+HGG+A++  +L+ + K+  PN    +R A
Sbjct: 77  NKKSVFLDEALTLFLPGPKTYTGEDLLELHLHGGVAIIKSVLQSIKKLHDPNNGVIIRQA 136

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
           + GEFS++AF NG++DL E E + D+I++ETE QR  S+   SG+    + +W +++ + 
Sbjct: 137 DRGEFSKQAFYNGRLDLTELEGINDMINAETESQRLASLASSSGQTKIEFMKWRNEIINQ 196

Query: 169 RSFIEADLDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            + +   +DF E+ D++      ++V  +I  ++++I +++S+ K  +I+ NG ++ +LG
Sbjct: 197 MANLTMIIDFGEDHDIEETDRMIRDVKENIAKIESEIKAYLSKVKSSQILLNGIQLALLG 256

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIV 284
             NAGKSS+ N LA KD AIV++I GTTRD+L I L++ GY V + DTAGIR  E  D +
Sbjct: 257 PPNAGKSSILNILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFEEADSI 316

Query: 285 EKEGIKRTFLEVENADL-ILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYST 334
           E+EGIKR       ADL I++L  ++ +KE              N   + +  K DL+++
Sbjct: 317 EQEGIKRAKQRSMLADLVIVVLDPMSVEKEPLELKEHLKTLVKANKQMLIVLNKQDLFAS 376

Query: 335 YTEE--------------YDHLISSFTGEGLEELINKIKSILSNKFKKL-------PFSI 373
            +EE              Y H++S  TG G++ L    + +L  KFK L       P  +
Sbjct: 377 RSEEMISNYSRLLDLPKNYFHVVSCSTGSGIDNL----QKLLIEKFKDLSQSETSNPIIV 432

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDII 432
            S  + +        + E     + +  L +  + LR +   +GKITG  +D+E++LD++
Sbjct: 433 SSRVQDILENDILFGFKEFYHWADAEDVL-VATDCLRQSVDGIGKITGQSIDLEEILDVV 491

Query: 433 FSKFCIGK 440
           FS FCIGK
Sbjct: 492 FSSFCIGK 499


>gi|294656970|ref|XP_002770353.1| DEHA2D18546p [Debaryomyces hansenii CBS767]
 gi|199431868|emb|CAR65707.1| DEHA2D18546p [Debaryomyces hansenii]
          Length = 516

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 162/484 (33%), Positives = 264/484 (54%), Gaps = 54/484 (11%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDK 63
           K TI+A+ST    SAI +IR+SG     +   + K  K P  + AS+R  +  +  +LD+
Sbjct: 39  KPTIYALSTKLARSAIGVIRVSGSQSQYIYNQLTKTSKSPKLKIASVRKLYSQEDILLDE 98

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP------NLRLANPGEFSRRA 117
            L + F SP+++TGED  E H+HGG A++  +L  + K+       N+R A  GEFSRRA
Sbjct: 99  ALTLYFKSPKTYTGEDILELHLHGGTAIIQSVLNAIKKLHEPNKGINIRYAENGEFSRRA 158

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+ DL E E + ++I +ETE QR  ++  ++G+    + +W +++    + +   +D
Sbjct: 159 FINGRFDLTEIEGIREMIDAETESQRVAALSSLTGDTKKTFAKWREEIVKNVALLTTVID 218

Query: 178 FSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           F E+ D++  +     V  ++  L  +I++ + +    E++  G K+++LG  NAGKSSL
Sbjct: 219 FGEDHDIEEVAQLFDTVEQNMDTLTGEINTFLRKVLSSEVLMKGIKLILLGPPNAGKSSL 278

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTF 293
            N LA K+ AIV+DI GTTRDV+ + LD+ GY V + DTAGIR T   D +E EGIKR  
Sbjct: 279 LNYLANKEAAIVSDIAGTTRDVIDVPLDINGYKVIVGDTAGIRTTTNADKIELEGIKRAK 338

Query: 294 LEVENADLILLLKEINSKKEISFPKNI-----------DFIFIGTKSDLYS--------- 333
           L+    DL+L++  +     I +   +           + + +  K DL S         
Sbjct: 339 LKSLGGDLVLVVLPLEDNSYIDYSDLVSHINLLKDEEKEIVVVLNKQDLLSSSNFTKNEI 398

Query: 334 --TYTE------EYDHLISSFTGEGLEELINKIKSILSNKFKKL-------PFSIPSHKR 378
             +Y+E      E  HL+S  TG+G+ EL+     +L++ FK +       P  I +  +
Sbjct: 399 IQSYSEKLILPVENFHLVSCITGDGISELM----CVLTDIFKAISLTETTDPIVISARAQ 454

Query: 379 HLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKF 436
            +  L   V Y +E   +  +   + + +E+L+ A+  +GKITG  + VE++L ++FS F
Sbjct: 455 DI--LRNDVIYGIEQFKIWREQDDVVLASESLKQAAEGIGKITGEAIGVEEVLGVVFSSF 512

Query: 437 CIGK 440
           CIGK
Sbjct: 513 CIGK 516


>gi|291615448|ref|YP_003525605.1| tRNA modification GTPase TrmE [Sideroxydans lithotrophicus ES-1]
 gi|291585560|gb|ADE13218.1| tRNA modification GTPase TrmE [Sideroxydans lithotrophicus ES-1]
          Length = 447

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 163/454 (35%), Positives = 245/454 (53%), Gaps = 21/454 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+ + + I A++T      I ++R+SG S       I    +  PR A+   F   DG  
Sbjct: 1   MSLKPDNIAAIATAPGRGGIGVVRVSG-SGLAAMAIILTGNRLTPRLATYTSFLAADGST 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP+P S+TGE+  E   HGG AV+  +L    ++   RLA PGEF++RAF N
Sbjct: 60  LDQGICLFFPAPHSYTGEEVLELQGHGGPAVLQSLLHRCLEL-GARLAQPGEFTQRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + TE   R +M  + GE S+     + +L  +R  +EA LDF E
Sbjct: 119 DKMDLAQAESVADLIDATTEQAARSAMRSLQGEFSAAIHHAVSQLIDLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE ++        + +  L + ++      K G I+R G ++V++G  NAGKSSL N  A
Sbjct: 179 EE-IETADRLLCASKLNILMDGLARIAGLAKQGSILREGAQVVLVGAPNAGKSSLLNRFA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +++A+V++IPGTTRD +   L + G  + + DTAG+RET+D VE+ GI RT L +  AD
Sbjct: 238 GEEIALVSEIPGTTRDSIRQALQVRGVPLHLIDTAGLRETNDAVEQMGIARTKLALTRAD 297

Query: 301 LIL-LLKEINSKKE-------ISFPKNIDFIFIGTKSDLYSTYTE-EYD----HL-ISSF 346
           ++L LL E   + E          P     +++  K DL       E D    H+ +S+ 
Sbjct: 298 VVLVLLDESRRRTEPEDFAVLAQLPAKTPCLYLHNKVDLSGHMPGVEIDADKIHIYLSAK 357

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
           TG G+E L  K+  + S  + +      +  RHL  L+    +LE A   ++    +I A
Sbjct: 358 TGAGMEVLEEKL--LESIGWHQETGVFMARTRHLEALATAGLHLEGA--RQQIDRPEIFA 413

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR A  +L  ITG    + LL  IFS+FCIGK
Sbjct: 414 EELRHAQEALSSITGEFSADDLLGEIFSRFCIGK 447


>gi|163783084|ref|ZP_02178079.1| tRNA modification GTPase TrmE [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881764|gb|EDP75273.1| tRNA modification GTPase TrmE [Hydrogenivirga sp. 128-5-R1-1]
          Length = 448

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 165/451 (36%), Positives = 256/451 (56%), Gaps = 19/451 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCF-QVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           K+ I A++T    SAI ++RL+G      V  +   K +  PR A         G  +D+
Sbjct: 2   KDPIVAIATPFGESAIGVVRLTGKDVLPTVLRYFRTKSEVKPRYAHYGTLVDERGEPIDE 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+L+ + +P S+TGED  E  +HG   ++  +LE L      RLA PGEF+RRAF NGK+
Sbjct: 62  GILVYYRAPNSYTGEDMVELSLHGNPLILKRVLE-LFLSAGCRLAEPGEFTRRAFLNGKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++A+LIS++TE+ RR S+  + GELS       + L  + ++IEAD++FSEE D
Sbjct: 121 DLAQAEAVAELISAKTELARRASLRQLRGELSRYVNSLRESLLELSAYIEADIEFSEE-D 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   + ++V+  +  +   I   +S  K G+++R G K+ I+G  N GKSSLFNAL K+D
Sbjct: 180 IPTLTKEQVIGMVDRVLEGIDQLLSTAKTGKLLREGIKLAIVGRPNVGKSSLFNALLKED 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRD +   L+L G  V++ DTAGIRE++D VE+ G++R+  ++E AD++L
Sbjct: 240 RAIVTDIEGTTRDYIEESLNLRGIPVRLIDTAGIRESEDPVERIGVERSMEKIEEADVVL 299

Query: 304 LL----KEINSKKEISFPK--NIDFIFIGTKSDLYSTYTEE--YDHLI---SSFTGEG-- 350
            +    +E+  +  + + K  + D + +  K D       E    H I   S+  G G  
Sbjct: 300 FVVDASEELREEDSLIYEKLGDKDIVVVFNKIDRGEVVPLEKFQGHSIIKVSALKGYGLK 359

Query: 351 -LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            LEE I K    ++++   +  S+  H+  L    +T+         E D   +I   ++
Sbjct: 360 DLEEEILKKAGAVAHEGLNIYVSV-RHEELLKKARETLSKFRDRYAKE-DISPEIAMLDV 417

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R AS  LG+I G +  E++L  IFS+FCIGK
Sbjct: 418 REASDFLGEIVGHITTEEVLGSIFSRFCIGK 448


>gi|190171214|gb|ACE63677.1| ThdF [Enterobacter helveticus]
          Length = 427

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 150/422 (35%), Positives = 236/422 (55%), Gaps = 23/422 (5%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SG     V + +  K  P PR A    F   D   LD+G+ + FP P SFTGE
Sbjct: 10  GVGILRISGKQARDVAQAVLGKL-PKPRYADYLPFKDSDNTPLDQGIALWFPGPNSFTGE 68

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + 
Sbjct: 69  DVLELQGHGGPVILDLLLKRILTIPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDAS 128

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   +  
Sbjct: 129 SEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNT 187

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL
Sbjct: 188 VIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 247

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--- 315
              + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +   +    
Sbjct: 248 REHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGTTTDAVDPAQ 307

Query: 316 --------FPKNIDFIFIGTKSDLY---STYTEEYDH---LISSFTGEGLEELINKIKSI 361
                    P+N+    +  K+D+    +  +E   H    +S+ +GEG+E L + +KS 
Sbjct: 308 IWPDFMARLPQNLPITVVRNKADVTGEPAGLSEVNGHSLIRLSARSGEGVEVLRDHLKSS 367

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKI 419
           +      +     + +RHL  L +   +L+   A L     G +++AE LRLA  SL +I
Sbjct: 368 MGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG-ELLAEELRLAQQSLSEI 425

Query: 420 TG 421
           TG
Sbjct: 426 TG 427


>gi|297539957|ref|YP_003675726.1| tRNA modification GTPase TrmE [Methylotenera sp. 301]
 gi|297259304|gb|ADI31149.1| tRNA modification GTPase TrmE [Methylotenera sp. 301]
          Length = 449

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 163/448 (36%), Positives = 255/448 (56%), Gaps = 19/448 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T +    I ++R+SGP   Q+   +     P PR A+   F   +G ++D+G+
Sbjct: 8   DTIAAIATASGAGGIGVVRVSGPFSGQIATGVLGHI-PAPRHAAYLDFKQANGDLIDRGI 66

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I +P+P S+TGED  E   HGG A++  +L    ++   R A PGEF+RRA+ N KIDL
Sbjct: 67  AIYYPNPHSYTGEDVLELQAHGGTALMQILLARCIEL-GARQAEPGEFTRRAYLNDKIDL 125

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI++ T    + ++  +SGE S      + KL  +R F+EA LDF EEE + 
Sbjct: 126 AQAEAVADLINAATAEAAKSAVRSLSGEFSQRINTLLLKLIDLRMFVEACLDFPEEE-ID 184

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +   V + +  +  ++++  ++ K G ++R G  +V++G  N GKSSL N LA +++A
Sbjct: 185 FITQGRVADKLATIIVELNAVFAKAKQGSLLREGINVVLVGQPNVGKSSLMNQLAGEEIA 244

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT I GTTRD +   + + G  + + DTAG+RETDD VEK GI+RT+   ++A++ LLL
Sbjct: 245 IVTSIAGTTRDTIKNAIQINGVPLHVIDTAGLRETDDEVEKFGIERTWRAAQSANIALLL 304

Query: 306 KE-----INSKKEI--SFPKNIDFIFIGTKSDLYS--TYTEEYD---HL-ISSFTGEGLE 352
            +       ++K I    P+ I  I++  K D+ +      E D   H+ +S+ TG GL+
Sbjct: 305 VDAAHGITETEKSILARLPQEIRKIWVHNKIDVANEPALVAEKDGAMHIYLSAKTGAGLD 364

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            L + +   L+           +  RHL  LSQ   +L  AS  E+    ++IAE LR++
Sbjct: 365 LLKSHLLK-LAGYENNSEGVFMARARHLEALSQVQIHLNFAS--EQINSAELIAEELRIS 421

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +L  ITG    + LL  IFSKFCIGK
Sbjct: 422 QDALSSITGEFTPDDLLGEIFSKFCIGK 449


>gi|297182384|gb|ADI18549.1| predicted GTPase [uncultured gamma proteobacterium HF4000_23L14]
          Length = 446

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 163/449 (36%), Positives = 252/449 (56%), Gaps = 21/449 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T    S I +IR+SGP    +   +   +   PR A    F+  +   +DKG+
Sbjct: 5   ETICALATAIGQSGIGVIRVSGPLSKVIANKVLNVELE-PRVAHYGSFYDEESNQIDKGV 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I F  P+S+TGED  E   HGG++V+  +LE +      RL+ PGEF++RAF NGK+DL
Sbjct: 64  AIYFSGPQSYTGEDVLELQGHGGMSVLRKLLETVIFF-GARLSEPGEFTKRAFLNGKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ DLI + ++     ++  ++GE S    Q +  L  +R F+EA +DFS+EE + 
Sbjct: 123 VQAEAVQDLIQASSDKSALSAVRSLTGEFSEKINQLLRDLIDLRVFVEATIDFSDEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV   +  LK ++   +     G I+R+G  + I G  NAGKSSL NAL K+  A
Sbjct: 182 FLESHEVSTKLEILKKELLDTLDCANQGAILRDGLHVAIAGKPNAGKSSLLNALTKQPSA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + +EG  + I DTAG+ ++D+I+E+EGI+R   E++NAD++LL+
Sbjct: 242 IVTDIAGTTRDVLKETIHVEGMPLHIIDTAGLHKSDNIIEQEGIRRAHAEIDNADVVLLV 301

Query: 306 KEI-NSKKEISFPKNI----DFIFIGTKSDLYST------YTEEYDHLISSFTGEGLEEL 354
            +  +S  + S   ++      I I  K DL +       +  + +  +S+  G+G+E L
Sbjct: 302 YDAKDSSADPSILPDVMVSKPIIAIRNKIDLLNAKAGMRQFEGQTEISLSAKFGDGIELL 361

Query: 355 INKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
               +  LS+     P       + KRH+  +  T+  +  A    +    +++AE+LR 
Sbjct: 362 ----RQALSDVAGYNPVGNGVFLARKRHILAIESTLISINSAIEQLEVGASELVAEDLRQ 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A +SLG ITG    + LL  IFS FCIGK
Sbjct: 418 AGMSLGMITGEFSSDDLLGEIFSSFCIGK 446


>gi|294341965|emb|CAZ90394.1| tRNA modification GTPase trmE [Thiomonas sp. 3As]
          Length = 472

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 163/472 (34%), Positives = 254/472 (53%), Gaps = 35/472 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + + I A++T     A+ I+R SG S   + + I  +    PR A+   F    G +
Sbjct: 4   LAQDADPIVAIATAPGRGAVGIVRASGKSLGALAQAITGRVL-LPRHATYLPFGDGQGGV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEFSRRA 117
           +D+GL + FP+P S+TGED  E  +HGG  V+  +L  L        LR+A PGEF+RRA
Sbjct: 63  IDRGLALFFPAPHSYTGEDVLELQIHGGPVVLQLLLARLLELGASSRLRVAQPGEFTRRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL +AES+ADLI + TE   R +   ++GELS        +L  +R  +EA LD
Sbjct: 123 FLNGKLDLAQAESVADLIEASTEAAARSATRALAGELSQAVRALAAELVELRLLVEATLD 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EE D+      +    +  L+  +    ++ + G ++R G ++V+ G  N GKSSL N
Sbjct: 183 FPEE-DIDFLRQAQAQRRLQALQQTLQQVQAKTRQGALLREGLQVVLAGQPNVGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           ALA  ++AIVT I GTTRD ++  + +EG  + I DTAG+R++ D VE+ G++R++  + 
Sbjct: 242 ALAGAELAIVTPIAGTTRDKVSQTIQIEGVPLHIVDTAGLRDSADAVERIGVERSWHAIA 301

Query: 298 NADLILLLKEI---------NSKKEIS--FPKNIDFIFIGTKSD-------------LYS 333
            AD+++ L ++          ++ EI+   PK    + +  K D             +++
Sbjct: 302 GADVVVFLHDLTRLQAPGYAQAEAEIARGLPKGAPLLHVFNKRDCVETGAQARLLPQVWA 361

Query: 334 TYTEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            +  E      IS+ TG+GL+EL  K+  +   +       I + +RH+  L QT ++L 
Sbjct: 362 QWGVEAGESVWISAATGDGLQELRLKLLQLAGAQPTSEGVFI-ARQRHVQALEQTGQHLG 420

Query: 392 MA-SLNEKD--CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  L E D    LD++AE LRL+  +L  ITG    + LL  IFS FCIGK
Sbjct: 421 AALHLIELDAQAPLDLLAEELRLSHQALMAITGEYTPDDLLGAIFSSFCIGK 472


>gi|331268194|ref|YP_004394686.1| tRNA modification GTPase TrmE [Clostridium botulinum BKT015925]
 gi|329124744|gb|AEB74689.1| tRNA modification GTPase TrmE [Clostridium botulinum BKT015925]
          Length = 462

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 173/464 (37%), Positives = 266/464 (57%), Gaps = 32/464 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP--RKASLRYFFGLD- 57
            E +TI A++T    S +SIIR+SG     +    FI K  +     R  S+RY F +D 
Sbjct: 5   KEFDTIAAIATNLGESGVSIIRVSGERALSIVSDIFIGKNDRKLDDIRTYSMRYGFIIDK 64

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G  LD+ ++     P SFT ED  E + HGG+ V   ILEE+ K    RLA+PGEF++
Sbjct: 65  VSGEKLDEVIVSYMKGPRSFTAEDVVEINCHGGVVVTKRILEEVMK-AGARLASPGEFTK 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI+++TE+  + ++E   G+LS       DKL  I + IEA 
Sbjct: 124 RAFLNGRIDLSQAEAVIDLINAKTELSAKSALEQSEGKLSKEISHLRDKLLEIIANIEAT 183

Query: 176 LDFSEE--EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           +D+ E+  E+V +   KE ++ I+   ++I   ++    G+I+R G   VI+G  N GKS
Sbjct: 184 VDYPEDDLEEVTSERGKEAVDKIV---SEIDKLLNSANEGKILREGLNTVIVGKPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           S+ NAL  +  AIVTDIPGTTRDV+   + +EG  +KI DTAGIRETDDIVEK G++++ 
Sbjct: 241 SILNALLMETRAIVTDIPGTTRDVIEEYMSIEGIPIKIVDTAGIRETDDIVEKIGVEKSR 300

Query: 294 LEVENADLILLL----KEINS--KKEISFPKNIDFIFIGTKSDLYSTYTEE------YDH 341
            ++ N+DL +L+    +++++  K+ I F K+  +I +  K DL +   +E       D+
Sbjct: 301 EKILNSDLTVLVLDSSRQLDAEDKEIIDFIKDKKYIVLLNKIDLDTKLDKESLNKLNSDY 360

Query: 342 L--ISSFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           +  IS+ TG+GL+     IK +  +     K +  +   HK  L     ++  +      
Sbjct: 361 IIDISARTGKGLDRFKEVIKELFFSGEVTSKDVMITNTRHKEALIRAKSSL--IAGKGAL 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E    +D+ + +LR A  +LG+I G    E ++D IFSKFC+GK
Sbjct: 419 ENTFAIDLASIDLRDAWKNLGEINGDTVEEDIIDKIFSKFCLGK 462


>gi|319765051|ref|YP_004128988.1| tRNA modification gtpase trme [Alicycliphilus denitrificans BC]
 gi|317119612|gb|ADV02101.1| tRNA modification GTPase TrmE [Alicycliphilus denitrificans BC]
          Length = 465

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 161/467 (34%), Positives = 238/467 (50%), Gaps = 30/467 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +   ++ I A++T     A+ I+R+SG       + +  +    PR+A    F    GR 
Sbjct: 2   LARHQDPIAAIATAPGRGAVGIVRVSGRGLAPFVQGLLGRSLQ-PRQAHYLPFPDAAGRS 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-----AKMPNLRLANPGEFSR 115
           +D+GL + FP+P S+TGED  E   HGG  V+  +L        A +P LRLA PGEF+ 
Sbjct: 61  IDQGLALFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQAVLPRLRLAEPGEFTE 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   +SG  S       D L H+R  +EA 
Sbjct: 121 RAFLNDKLDLAQAEAIADLIDASTEAAARSAGRSLSGAFSQEIHGLRDALVHLRMLVEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +      +    +  L+  +++ + +   G ++R G K+VI G  NAGKSSL
Sbjct: 181 LDFPEEE-IDFLRKADARGQLSNLQQTLAAVMQRASQGALLREGIKVVIAGQPNAGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RE+ D VE+ GI R + E
Sbjct: 240 LNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHIIDTAGLRESADEVERIGIARAWDE 299

Query: 296 VENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
           +  AD +L L +               I S       +++  I +  K+D  +       
Sbjct: 300 ITQADAVLFLHDLTRLDAPEYIAADALIASTLVQKLSESVPVIDVWNKTDAAARPAPAAT 359

Query: 341 HL-----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMA 393
                  +S+ TG+GL+ L  ++  +   +       I +  RH+  L     +L    A
Sbjct: 360 AGRAAVQLSARTGQGLDALRRELLRVAGWQSAAEGVYI-ARARHIEALRAVDAHLMEAAA 418

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L      LD++AE LRLA  +L  ITG    + LL +IFS FCIGK
Sbjct: 419 QLESTGPALDLLAEELRLAQSALNAITGEFTSDDLLGVIFSSFCIGK 465


>gi|190171230|gb|ACE63685.1| ThdF [Enterobacter pulveris]
          Length = 439

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 239/434 (55%), Gaps = 23/434 (5%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SG     V + +  K  P PR A    F   D   LD+G+ + FP P SFTGE
Sbjct: 10  GVGILRISGKLARDVAQAVLGKL-PKPRYADYLPFKDSDNTPLDQGIALWFPGPNSFTGE 68

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + 
Sbjct: 69  DVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDAS 128

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   +  
Sbjct: 129 SEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNT 187

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL
Sbjct: 188 VIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 247

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--- 315
              + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +   +    
Sbjct: 248 REHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGTTTDAVDPAQ 307

Query: 316 --------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIKSI 361
                    P+ +    +  K+D+       TE   H    +S+ +GEG+E L + +KS 
Sbjct: 308 IWPDFMARLPQALPITVVRNKADVTGEAPGLTEVNGHSLIRLSARSGEGVEVLRDHLKSS 367

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKI 419
           +      +     + +RHL  L +   +L+   A L     G +++AE LRLA  SL +I
Sbjct: 368 MGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG-ELLAEELRLAQQSLSEI 425

Query: 420 TGCVDVEQLLDIIF 433
           TG    + LL  IF
Sbjct: 426 TGEFTSDDLLGRIF 439


>gi|190171246|gb|ACE63693.1| ThdF [Escherichia hermannii]
          Length = 438

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 155/438 (35%), Positives = 241/438 (55%), Gaps = 29/438 (6%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG     V + +  K  P PR A    F  +D   LD+G+ + FP P SFTG
Sbjct: 8   GGVGILRISGLKARDVAQAVLGKL-PKPRYADYLPFRDVDNTALDQGIALWFPGPNSFTG 66

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 67  EDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 126

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +EE +   S  ++   LN
Sbjct: 127 SSEQAARSALNSLQGAFSTRVNQLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 185

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           D++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTT
Sbjct: 186 DVM---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 242

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +    
Sbjct: 243 RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAT 302

Query: 315 S-----------FPKNIDFIFIGTKSDLY---STYTEEYDH---LISSFTGEGLEELINK 357
                        P+ +    +  K+D+       +E   H    +S+ TG G++ L + 
Sbjct: 303 DPAAIWPDFIARLPQKLPITVVRNKADITGEPQGLSEVNGHSLIRLSARTGNGVDVLRDH 362

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVS 415
           +K  +      +     + +RHL  L    ++LE   A L     G +++AE LRLA  S
Sbjct: 363 LKHSMGFD-TNMEGGFLARRRHLQALENAAQHLEQGKAQLLGAWAG-ELLAEELRLAQQS 420

Query: 416 LGKITGCVDVEQLLDIIF 433
           L +ITG    + LL  IF
Sbjct: 421 LSEITGEFTSDDLLGRIF 438


>gi|190171226|gb|ACE63683.1| ThdF [Enterobacter pulveris]
          Length = 439

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 154/433 (35%), Positives = 239/433 (55%), Gaps = 23/433 (5%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P PR A    F   D   LD+G+ + FP P SFTGED
Sbjct: 11  VGILRISGKLARDVAQAVLGKL-PKPRYADYLPFKDSDNTPLDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   +  +
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNTV 188

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL 
Sbjct: 189 IGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR 248

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS---- 315
             + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +   +     
Sbjct: 249 EHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGTTTDAVDPAQI 308

Query: 316 -------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIKSIL 362
                   P+ +    +  K+D+       TE   H    +S+ +GEG+E L + +KS +
Sbjct: 309 WPDFMARLPQALPITVVRNKADVTGEAPGLTEVNGHSLIRLSARSGEGVEVLRDHLKSSM 368

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKIT 420
                 +     + +RHL  L +   +L+   A L     G +++AE LRLA  SL +IT
Sbjct: 369 GFD-TNMEGGFLARRRHLQALEEAAAHLQQGKAQLLGAWAG-ELLAEELRLAQQSLSEIT 426

Query: 421 GCVDVEQLLDIIF 433
           G    + LL  IF
Sbjct: 427 GEFTSDDLLGRIF 439


>gi|222056913|ref|YP_002539275.1| tRNA modification GTPase TrmE [Geobacter sp. FRC-32]
 gi|221566202|gb|ACM22174.1| tRNA modification GTPase TrmE [Geobacter sp. FRC-32]
          Length = 455

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 171/463 (36%), Positives = 259/463 (55%), Gaps = 38/463 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
           ++TI A+ST      ISIIR+SGP C  + + I ++ +    K S R+++G+        
Sbjct: 4   RDTIAAISTPIGEGGISIIRISGPDCLSIADRIFRRSRDGGLK-SHRFYYGVIFDPDSAA 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ILD+ ++++   P SFT ED  E H HGG  VV  IL  L      RLA+PGEF++RAF 
Sbjct: 63  ILDEAMVVLMRGPNSFTREDVLELHCHGGYLVVRRILA-LVLRQGARLADPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL++AE++ D+I S++EM   L+     G LS    Q  + L    +F+EA +DF 
Sbjct: 122 NGRIDLVQAEAIMDIIHSKSEMSLNLAQHQREGLLSRQLFQLKEYLLSSLAFLEAFIDFP 181

Query: 180 EEEDVQNFSSKE----VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           EE+   + S+KE     ++  L + +++ S  S+G+   IIR G  +VI G  N GKSSL
Sbjct: 182 EED--IDVSAKEHIGQNIDSSLLMLDELLSGFSEGR---IIREGVSVVIAGKPNVGKSSL 236

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL ++  AIVT IPGTTRD++   + + G  VK+ DTAGIRE+DD VEKEG+K +  +
Sbjct: 237 LNALLQEKRAIVTAIPGTTRDLIEEQMTINGLPVKLLDTAGIRESDDHVEKEGVKLSLEK 296

Query: 296 VENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-----LIS 344
           + +ADL+L + + +S      +  +       F+ +  KSD+  +Y   ++       +S
Sbjct: 297 LSSADLVLFVVDASSSFSAEDQSILERLSGFSFMVVKNKSDIDGSYVLPFEPELPVLSLS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLP------FSIPSHKRHLYHLSQTVRYLEMASLN-E 397
           + TG GL +L    +  + + F  LP      F   S  RH   L+     L     N +
Sbjct: 357 THTGHGLVDL----QQAIFDFFIHLPDHDSREFVAISQVRHRDALTGCRNALANFKDNLD 412

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  LD++A +LR A  SLG +TG    + +LD IF +FCIGK
Sbjct: 413 REVNLDLLAIDLRDALDSLGAVTGETTADDVLDRIFQQFCIGK 455


>gi|167626215|ref|YP_001676509.1| tRNA modification GTPase TrmE [Shewanella halifaxensis HAW-EB4]
 gi|189036208|sp|B0TQH0|MNME_SHEHH RecName: Full=tRNA modification GTPase mnmE
 gi|167356237|gb|ABZ78850.1| tRNA modification GTPase TrmE [Shewanella halifaxensis HAW-EB4]
          Length = 453

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 246/454 (54%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG     V   +     P  R A    F    G ++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGDLASNVAMAVLGHI-PKTRYADYCDFKEDSGEVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ + ++  LR+A PGEFS +AF N K+DL
Sbjct: 63  ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVDGLRIAKPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + ++  + GE S+     ++K+T++R ++EA +DF +EE V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALNSLQGEFSTQVHDLVEKVTNLRLYVEAAIDFPDEE-VD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +   +    +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKIAASLNGIIGKLDGVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTADTVEKIGIERAWDEIRTADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348
            +  +   +             P N+    +  K+DL       T E  H    IS+ TG
Sbjct: 302 VDGTTTPAVDPHEIWPDFIDRLPNNLGVTVVRNKADLTGEDLAITTEAGHSVYRISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
            G+++L   +KS++  +   L     + +RHL  L     +L +    L     G +++A
Sbjct: 362 LGVDDLKQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLLLGKEQLEVYQAG-ELLA 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 420 EELRMCQMALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|190171244|gb|ACE63692.1| ThdF [Escherichia hermannii]
          Length = 438

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 155/438 (35%), Positives = 241/438 (55%), Gaps = 29/438 (6%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG     V + +  K  P PR A    F  +D   LD+G+ + FP P SFTG
Sbjct: 8   GGVGILRISGLKARDVAQAVLGKL-PKPRYADYLPFRDVDNTALDQGIALWFPGPNSFTG 66

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 67  EDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 126

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +EE +   S  ++   LN
Sbjct: 127 SSEQAARSALNSLQGAFSTRVNQLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 185

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           D++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTT
Sbjct: 186 DVM---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 242

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +    
Sbjct: 243 RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAT 302

Query: 315 S-----------FPKNIDFIFIGTKSDLY---STYTEEYDH---LISSFTGEGLEELINK 357
                        P+ +    +  K+D+       +E   H    +S+ TG G++ L + 
Sbjct: 303 DPAAIWPDFIARLPQKLPITVVRNKADITGEPQGLSEVNGHSLIRLSARTGNGVDVLRDH 362

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVS 415
           +K  +      +     + +RHL  L    ++LE   A L     G +++AE LRLA  S
Sbjct: 363 LKHSMGFD-TNMEGGFLARRRHLQALETAAQHLEQGKAQLLGAWAG-ELLAEELRLAQQS 420

Query: 416 LGKITGCVDVEQLLDIIF 433
           L +ITG    + LL  IF
Sbjct: 421 LSEITGEFTSDDLLGRIF 438


>gi|190171184|gb|ACE63662.1| ThdF [Enterobacter asburiae]
          Length = 439

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 153/435 (35%), Positives = 238/435 (54%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDTDGTPLDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   + 
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 187 QVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +   
Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+D+        D   H    +S+ TGEG+++L N +K 
Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVDDLRNHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +      +     + +RHL  L +   +L    A L     G +++AE LRLA  +L +
Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEEAANHLVQGKAQLIGAWAG-ELLAEELRLAQQNLSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 425 ITGEFTSDDLLGRIF 439


>gi|190171220|gb|ACE63680.1| ThdF [Enterobacter kobei]
          Length = 439

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 152/435 (34%), Positives = 240/435 (55%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDSDGTPLDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   + 
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 187 QVMSDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +   
Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+D+       ++   H    +S+ TGEG+++L N +K 
Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVDDLRNHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +      +     + +RHL  L +   +L    A L     G +++AE LRLA  +L +
Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEEAANHLVQGKAQLIGAWAG-ELLAEELRLAQQNLSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 425 ITGEFTSDDLLGRIF 439


>gi|147679252|ref|YP_001213467.1| tRNA modification GTPase TrmE [Pelotomaculum thermopropionicum SI]
 gi|189036204|sp|A5CY46|MNME_PELTS RecName: Full=tRNA modification GTPase mnmE
 gi|146275349|dbj|BAF61098.1| predicted GTPase [Pelotomaculum thermopropionicum SI]
          Length = 459

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 163/458 (35%), Positives = 259/458 (56%), Gaps = 25/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFG----LDGRI 60
           +TI A+ST      I I+R+SGP   +V + F   K+K + +  S R  +G     +G I
Sbjct: 4   DTIAAISTPIGEGGIGIVRISGPDAVKVAKKFFLTKRKDWDQAGSHRLIYGHVFDREGNI 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL    +P ++T ED  E + HGGI  +  +LE LA     RLA PGEFS+RAF N
Sbjct: 64  VDEVLLSFMRAPRTYTREDVVEINCHGGIVPLRKVLE-LALANGARLAEPGEFSKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AES+ D+I S+TE   R+++  + G+LS        +L  + + +EA++DF E
Sbjct: 123 GRLDLAQAESVIDIIRSKTEAGLRVAVSQLRGDLSRKVEDLQGRLLGLLAQVEANIDFPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           + D++  + +++L     L  +I   + + + G+I R G   VI+G  N GKSSL NAL 
Sbjct: 183 D-DLEEATVEDILRSGEDLIEEIKEIVRRAEAGKIYREGISTVIIGRPNVGKSSLLNALL 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDIPGTTRD++   +++ G  +KI DTAG+RET D VE+ G+++    VE AD
Sbjct: 242 RENRAIVTDIPGTTRDIIEEYINIRGIPLKIIDTAGLRETGDAVERIGVEKAREAVEQAD 301

Query: 301 LILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDH----------LIS 344
           L+LL+ +     ++++ +  + +     IFI  K+D+                     IS
Sbjct: 302 LVLLVLDAARGLTEEDYAIIEKVGGKKVIFIVNKADVREKKISSEGAARIAGGRPVLWIS 361

Query: 345 SFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
           +  G GL++L  KI + ++  +       I S+ RH   + +   +L E  S   ++  +
Sbjct: 362 ALEGTGLDKLEEKIVEMVMGGQVYPKDELIISNTRHRMAMERAADHLAEAVSGIRQNVPV 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++A +LR A  SLG+ITG    E L+D IF+ FCIGK
Sbjct: 422 DVVAIDLRAAWESLGEITGTTVTEDLIDRIFADFCIGK 459


>gi|67459606|ref|YP_247230.1| tRNA modification GTPase TrmE [Rickettsia felis URRWXCal2]
 gi|75535997|sp|Q4UK70|MNME_RICFE RecName: Full=tRNA modification GTPase mnmE
 gi|67005139|gb|AAY62065.1| tRNA modification GTPase TrmE [Rickettsia felis URRWXCal2]
          Length = 480

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 165/485 (34%), Positives = 262/485 (54%), Gaps = 56/485 (11%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR---------------KASL 50
           ETIFA S+    + +++ R+SGP   +V + +  +    PR                AS 
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRADFKPRIMYYQQITVPKTIVNSASF 61

Query: 51  RY----------------FFGLDGRI-----LDKGLLIVFPSPESFTGEDSAEFHVHGGI 89
            Y                     G I     +D  +++ F SP SFTGED  E H HG  
Sbjct: 62  AYKEPRVEPITNRRATSDIVSEGGSIDYKELIDNAMVVYFKSPNSFTGEDVVEIHTHGSK 121

Query: 90  AVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEG 149
           A+   ++  L  + ++RLA  GEF++RAF N K DL  AE +ADLI++ET MQ R ++  
Sbjct: 122 AISIMLINALLNIADIRLAEAGEFTKRAFLNNKFDLTAAEGIADLINAETIMQHRQAIRQ 181

Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209
            SG L  LY  W  +L  I S +EA +DF  +ED+ +    +V N    L N+IS++++ 
Sbjct: 182 ASGGLEELYNNWRTQLLKIISLLEAYIDFP-DEDIPDSVLNDVNNTHKNLVNEISNYLND 240

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            + GE++ +G K+ I+G  N GKSSL N L ++D+AIV++I GTTRD++   LD+ GY +
Sbjct: 241 NRRGELLNSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPI 300

Query: 270 KISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLL---KEINS--KKEISFPKNIDFI 323
            + DTAGIR E+ DI+E+EGIKR     + AD+ +++   ++++S   ++I    N + I
Sbjct: 301 ILQDTAGIREESSDIIEQEGIKRAIHSAKTADIKIIMFDAEKLDSSINEDIMNLINENTI 360

Query: 324 FIGTKSDLYS-----TYTEEYDHL-ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPS 375
            I  K DL       +   +Y  L +S      L  ++  I++I  N   F + P+   +
Sbjct: 361 TIINKIDLIEPNKIFSIENKYKCLRVSVKNNIALSSILKNIENIAENMAGFTETPYI--T 418

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435
           ++RH ++L Q + +L   SL   D  L +  E++R+ +  +G ITG +++E++L  IF  
Sbjct: 419 NQRHRHYLKQALSHLTAFSL---DNDLVLATEDIRMTARCIGAITGVINIEEILGEIFKN 475

Query: 436 FCIGK 440
           FCIGK
Sbjct: 476 FCIGK 480


>gi|190171236|gb|ACE63688.1| ThdF [Enterobacter radicincitans]
          Length = 439

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 154/436 (35%), Positives = 240/436 (55%), Gaps = 29/436 (6%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P PR A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRISGVKARDVAQAVLGKL-PKPRYADYLPFQDADGSALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   LND+
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLNDV 188

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 189 I---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS- 315
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +   +  
Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP 305

Query: 316 ----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIK 359
                      P  +    +  K+D+       ++  +H    +S+ TGEG++ L   +K
Sbjct: 306 AEIWPDFIARLPARLPITVVRNKADVTGEPLGISDVNNHSLVRLSARTGEGVDVLRQHLK 365

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLG 417
             +      +     + +RHL  L     +L+   A L     G +++AE LRLA  +L 
Sbjct: 366 QSMGFD-TSMEGGFLARRRHLQALEAAAEHLQQGKAQLLGAWAG-ELLAEELRLAQQNLS 423

Query: 418 KITGCVDVEQLLDIIF 433
           +ITG    + LL  IF
Sbjct: 424 EITGEFTSDDLLGRIF 439


>gi|190171256|gb|ACE63698.1| ThdF [Pantoea sp. E147]
          Length = 439

 Score =  245 bits (626), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 153/435 (35%), Positives = 236/435 (54%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V   +  K  P PR A    F   DGR+LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRVSGAQAAEVARQLLGKL-PKPRYADYLPFTDSDGRVLDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S   +   + 
Sbjct: 128 SSEQAARSAVNSLQGVFSTRINHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGRIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +D AIVTDI GTTRDV
Sbjct: 187 TVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +       
Sbjct: 247 LREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDATEAA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+D+       TE   H    +S+ T  G++EL + +K 
Sbjct: 307 AIWPDFVSRLPPELPITVVRNKADVTGESLGLTEVNGHSLIRLSARTSAGVDELRDHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +      +     + +RHL  L     +L+   A L     G +++AE LRLA  +L +
Sbjct: 367 SMGFA-GDMEGGFLARRRHLQALELAATHLQQGKAQLLGAWAG-ELLAEELRLAQQALSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 425 ITGEFTSDDLLGRIF 439


>gi|190171188|gb|ACE63664.1| ThdF [Enterobacter cancerogenus]
          Length = 439

 Score =  245 bits (626), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 152/435 (34%), Positives = 239/435 (54%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG    +V E +  K  P PR A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDSDGTPLDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   + 
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 187 EVMKDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  +   +   
Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306

Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360
                     P  +    +  K+D+       ++   H    +S+ TGEG+++L N +K 
Sbjct: 307 DIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVDDLRNHLKQ 366

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418
            +      +     + +RHL  L +   +L    A L     G +++AE LRLA  +L +
Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEEAANHLVQGKAQLIGAWAG-ELLAEELRLAQQNLSE 424

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 425 ITGEFTSDDLLGRIF 439


>gi|254468542|ref|ZP_05081948.1| tRNA modification GTPase TrmE [beta proteobacterium KB13]
 gi|207087352|gb|EDZ64635.1| tRNA modification GTPase TrmE [beta proteobacterium KB13]
          Length = 453

 Score =  245 bits (626), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 160/436 (36%), Positives = 242/436 (55%), Gaps = 20/436 (4%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + +IR+SGP+ F +   I         +A    F+  +G++LDKGLLI F  P+SFTGE
Sbjct: 24  GVGVIRISGPAAFTIAHQITHLDSIDSHRAQFTSFYSNEGQLLDKGLLIGFKGPKSFTGE 83

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D AEF +HGG A++  +LEE   M   R+A PGEF+ RAF N K+DL +AE++AD+I++ 
Sbjct: 84  DVAEFQLHGGPALLQSLLEEALSM-GARMAKPGEFTYRAFLNNKLDLTQAEAVADIINAS 142

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           T+     +   + G  S      + KL  IR +IEA LDF EEE +      ++ + I  
Sbjct: 143 TKSAVINAANSLKGNFSLQINNLLKKLIDIRMYIEACLDFPEEE-IDFIEKGQIKSKIQS 201

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++  I         G++I++G+++ ++G  N GKS+L N  ++++VAIVT++PGTTRD +
Sbjct: 202 IQQAIIVLQETAAKGQMIQDGFQVCLVGKPNVGKSTLMNLFSQEEVAIVTNVPGTTRDPV 261

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
              + L+G  +   DTAGIRET+DIVE+ GIK+T   +  + L+L+L E   + +    +
Sbjct: 262 RASIALKGVPLNFVDTAGIRETEDIVEQAGIKKTREIISRSALVLVLLESLDEADDYLKQ 321

Query: 319 NI-----DFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKI-KSILSNKF 366
           NI     + I++  K DL +      D+       IS+  G GL+ L   I +S   N  
Sbjct: 322 NILQDECNVIWLLNKIDLNNEPPHVTDYAGQPLVAISAKCGTGLDLLEEHILQSFGLNHL 381

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +       S +RHL  L Q   +L  A   LN+     +++AE L LA   +  ITG   
Sbjct: 382 EANEQLFSSRQRHLEALKQIDHHLNTALDQLNQP----ELVAEELTLAQKEMSGITGEFS 437

Query: 425 VEQLLDIIFSKFCIGK 440
            E LL  IFS+FCIGK
Sbjct: 438 TEDLLGEIFSRFCIGK 453


>gi|119475232|ref|ZP_01615585.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2143]
 gi|119451435|gb|EAW32668.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2143]
          Length = 465

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 159/466 (34%), Positives = 253/466 (54%), Gaps = 34/466 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG----- 58
           + +TI A++T      + I+R+SGP+   +   I   +   PR AS   F+  +      
Sbjct: 5   DTDTIVAIATAPGRGGVGIVRVSGPNSKAIASLITDSQLA-PRYASYGAFYEANSTINTR 63

Query: 59  --RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             R++D GL + FP P SFTGED  E   HGG  +++ +L E+ K+   RLA PGEFS R
Sbjct: 64  SDRVIDYGLTLFFPGPNSFTGEDVLELQAHGGPVILDYLLSEIIKL-GARLARPGEFSER 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF N K+DL +AE++ADLI S +    R ++  + G+ S      +  + ++R ++EA +
Sbjct: 123 AFLNNKMDLTQAEAIADLIDSASLQAARNAVRSLQGQFSKKIMSLVSAVVNLRVYVEAAI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF EEE +   +  +V +D+  + N ++   S+ K G +++ G  +VI G  NAGKSSL 
Sbjct: 183 DFPEEE-IDFLADGKVSSDLDTILNQLNRVFSEAKQGSLVQEGMTVVIAGKPNAGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL+ +D AIVT+I GTTRDVL   + ++G  + I DTAG+R++ DI+E+EGI+R + E+
Sbjct: 242 NALSGRDSAIVTEIEGTTRDVLREHIQIDGMPLHIIDTAGLRDSPDIIEQEGIRRAWEEI 301

Query: 297 ENADLILLLKEINSKKEISFPKNI---------------DFIFIGTKSDLYSTYTE--EY 339
             AD ILL+ +  + +EI   K I               +   +  K+DL     E  E 
Sbjct: 302 NRADRILLVVDSTTSREIDPVKLIGDLGPDISSKLSSLANVTIVHNKADLSGQAVEIVEA 361

Query: 340 DHLISSFTG---EGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
           +  + + +    +G+E L   +K+ +  +   +  F+  + +RHL  L+     L     
Sbjct: 362 EQTLITLSAKDDQGIELLRQHLKACMGYDGAGEGGFT--ARRRHLDALTNAQEALHAGQQ 419

Query: 396 NEKDCGL-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                G  +++AE+LR    +L +ITG    + LL  IFS FCIGK
Sbjct: 420 QLLSYGAGELLAEDLRHCQNALSEITGEFSSDDLLGEIFSSFCIGK 465


>gi|332187013|ref|ZP_08388754.1| small GTP-binding domain protein [Sphingomonas sp. S17]
 gi|332013023|gb|EGI55087.1| small GTP-binding domain protein [Sphingomonas sp. S17]
          Length = 428

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 149/445 (33%), Positives = 238/445 (53%), Gaps = 29/445 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFAVS+G  P+AI++IR+SGP  F   E +  +  P PR+A LR      G  LD  L
Sbjct: 3   DTIFAVSSGQPPAAIAVIRVSGPQAFAATERLAGRL-PKPRRAGLRRLRDAAGETLDSAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P + TGED  E H HGG AVV  +   LA  P +R A PGEF+RRA  +G+IDL
Sbjct: 62  VLSFPGPATATGEDLVELHCHGGRAVVAAVEGALAAQPGVRHAEPGEFTRRALTHGRIDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE LADL+ ++TE QRR ++  + G++S     W+D+   + + IEA LDF+EE+DV 
Sbjct: 122 AEAEGLADLLEAQTERQRRAAIGAVEGQVSQALRGWMDRTATLSAAIEAMLDFAEEDDVP 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-------NGYKIVILGHSNAGKSSLFNA 238
             ++      +  ++ ++   ++Q  L  + R       +G ++V+ G  N+GKS+L N 
Sbjct: 182 LDAAA-----LAGIRGEMDG-LAQAMLEVVDRPPVDRLHDGIRVVLAGPPNSGKSTLLNL 235

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVE 297
           L +++ AIV+ I GTTRD +   +   G    ++DTAG+ E TDD++E  GI R    ++
Sbjct: 236 LTEREAAIVSPIAGTTRDRIEASVLRGGIAYVLTDTAGLAEDTDDVIEAIGITRAQEAID 295

Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            AD++L L +    +E       D +++ +++D+           ++    +G    I  
Sbjct: 296 QADILLWLADTPPPRE-------DALWLHSRADVPGREGLPAGRQLAVRRDDGAS--IAA 346

Query: 358 IKSILSNKFKKLPFSIPSHKRHLY--HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
           +   ++ +   L   +P      +  H     R    A L        ++AE LR+A  +
Sbjct: 347 LWHAVAERAASL---LPREDAVGFKRHQQDQCRLAAQALLAAPKADALLMAEELRVARQA 403

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           L  + G    E +LD +F +FC+GK
Sbjct: 404 LAGLLGVSATETMLDALFGRFCLGK 428


>gi|330827243|ref|YP_004390546.1| tRNA modification GTPase mnmE [Alicycliphilus denitrificans K601]
 gi|329312615|gb|AEB87030.1| tRNA modification GTPase mnmE [Alicycliphilus denitrificans K601]
          Length = 465

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 161/467 (34%), Positives = 238/467 (50%), Gaps = 30/467 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +   ++ I A++T     A+ I+R+SG       + +  +    PR+A    F    GR 
Sbjct: 2   LARHQDPIAAIATAPGRGAVGIVRVSGRGLAPFVQGLLGRSLQ-PRQAHYLPFPDAAGRS 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-----AKMPNLRLANPGEFSR 115
           +D+GL + FP+P S+TGED  E   HGG  V+  +L        A +P LRLA PGEF+ 
Sbjct: 61  IDQGLALFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQAVLPRLRLAEPGEFTE 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   +SG  S       D L H+R  +EA 
Sbjct: 121 RAFLNDKLDLAQAEAIADLIDASTEAAARSAGRSLSGAFSQEIHGLRDALVHLRMLVEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +      +    +  L+  +++ + +   G ++R G K+VI G  NAGKSSL
Sbjct: 181 LDFPEEE-IDFLRKADARGQLSNLQQTLAAVMQRASQGALLREGIKVVIAGQPNAGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RE+ D VE+ GI R + E
Sbjct: 240 LNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHIIDTAGLRESADEVERIGIARAWDE 299

Query: 296 VENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
           +  AD +L L +               I S       +++  I +  K+D  +       
Sbjct: 300 ITQADAVLFLHDLTRLDAPEYIAADALIASTLVQKLSESVPVIDVWNKTDAAARPAPAAT 359

Query: 341 HL-----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMA 393
                  +S+ TG+GL+ L  ++  +   +       I +  RH+  L     +L    A
Sbjct: 360 AGRAAVQLSARTGQGLDALRRELLRVAGWQSAAEGVYI-ARARHIEALRAVDAHLMEAAA 418

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L      LD++AE LRLA  +L  ITG    + LL +IFS FCIGK
Sbjct: 419 QLESTGPALDLLAEELRLAQNALNAITGEFTSDDLLGVIFSSFCIGK 465


>gi|326386157|ref|ZP_08207781.1| tRNA modification GTPase TrmE [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209382|gb|EGD60175.1| tRNA modification GTPase TrmE [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 432

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 172/445 (38%), Positives = 240/445 (53%), Gaps = 26/445 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64
           +TIFA+S+G LP+AI ++R+SGP      E +  +  P PR+A +      D G +LD+ 
Sbjct: 4   DTIFALSSGQLPAAIGVMRISGPQAGLALERLAGRL-PSPRRAGVAALRHPDHGEVLDRT 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++  P P + TGED AE H+HGG AV   + E L  +  LR A PGEF+RRAF NG+ID
Sbjct: 63  LVLWLPGPHNATGEDCAELHLHGGRAVAAAVEEALLAL-GLRRAEPGEFTRRAFANGRID 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE LADL+ +ETE+QRR +     G LS     W+  L  + + +EA LDF++E DV
Sbjct: 122 LAEAEGLADLLEAETELQRRSAQAMAGGALSRAVESWLQTLLGLSARLEASLDFADEGDV 181

Query: 185 QNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            +  +   +        L +D+   +S+ +  E +R GY++V+ G  NAGKS+LFNAL +
Sbjct: 182 DDGEATLPVGFGEACTRLVDDLGEWLSRPR-AEPLREGYRVVLAGPPNAGKSTLFNALVE 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENAD 300
            + AI++  PGTTRDVL   + L G      DTAG+RE     VE  GI R   E E AD
Sbjct: 241 SEAAIISAEPGTTRDVLVQGVALAGVPFSFVDTAGLREEGVGAVEAIGIARARAEAERAD 300

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGL----EELI 355
           L+L L       E   P+      I  + D      +      +S+ TGEGL    E L+
Sbjct: 301 LVLWL-----GPEGEGPQGPHVWEIAAQCDREDQAAKIAPMFRVSARTGEGLGTLREALV 355

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
            + +S +       P     ++R    L Q    L  A L E+D  L   AE LRLA  +
Sbjct: 356 ERARSAMPA-----PGQAALNRRQHDLLDQAQAALRSACL-ERDPLL--AAECLRLARQA 407

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
              +TG  D E +LD +F +FCIGK
Sbjct: 408 FDALTGRADTEAMLDALFGRFCIGK 432


>gi|190171228|gb|ACE63684.1| ThdF [Enterobacter pulveris]
 gi|190171232|gb|ACE63686.1| ThdF [Enterobacter pulveris]
          Length = 439

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 153/434 (35%), Positives = 239/434 (55%), Gaps = 23/434 (5%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SG     V + +  K  P PR A    F   D   LD+G+ + FP P SFTGE
Sbjct: 10  GVGILRISGKLARDVAQAVLGKL-PKPRYADYLPFKDSDNTPLDQGIALWFPGPNSFTGE 68

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + 
Sbjct: 69  DVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDAS 128

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   +  
Sbjct: 129 SEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNT 187

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL
Sbjct: 188 VIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 247

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--- 315
              + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +   +    
Sbjct: 248 REHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGTTTDAVDPAQ 307

Query: 316 --------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIKSI 361
                    P+ +    +  K+D+       TE   H    +S+ +G+G+E L + +KS 
Sbjct: 308 IWPDFMARLPQTLPITVVRNKADVTGEAPGLTEVNGHSLIRLSARSGDGVEVLRDHLKSS 367

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKI 419
           +      +     + +RHL  L +   +L+   A L     G +++AE LRLA  SL +I
Sbjct: 368 MGFD-TNMEGGFLARRRHLQALEEAAAHLQQGKAQLLGAWAG-ELLAEELRLAQQSLSEI 425

Query: 420 TGCVDVEQLLDIIF 433
           TG    + LL  IF
Sbjct: 426 TGEFTSDDLLGRIF 439


>gi|190171194|gb|ACE63667.1| ThdF [Enterobacter cowanii]
          Length = 439

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 154/436 (35%), Positives = 240/436 (55%), Gaps = 29/436 (6%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P PR A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRISGLKARDVAQAVLGKL-PKPRYADYLAFQDADGSALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   LN++
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLNNV 188

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +   +D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 189 I---SDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS- 315
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +   +  
Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP 305

Query: 316 ----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIK 359
                      P  +    +  K+D+       +E  +H    +S+ T EG++ L   +K
Sbjct: 306 ADIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNNHSLVRLSARTNEGVDVLRQHLK 365

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLG 417
             +      +     + +RHL  L     +L+   A L     G +++AE LRLA  SL 
Sbjct: 366 QSMGFD-TSMEGGFLARRRHLQALEMAAEHLQQGKAQLLGAWAG-ELLAEELRLAQQSLS 423

Query: 418 KITGCVDVEQLLDIIF 433
           +ITG    + LL  IF
Sbjct: 424 EITGEFTSDDLLGRIF 439


>gi|321313663|ref|YP_004205950.1| tRNA modification GTPase TrmE [Bacillus subtilis BSn5]
 gi|291486741|dbj|BAI87816.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. natto
           BEST195]
 gi|320019937|gb|ADV94923.1| tRNA modification GTPase TrmE [Bacillus subtilis BSn5]
          Length = 459

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 164/461 (35%), Positives = 260/461 (56%), Gaps = 29/461 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LDG 58
           +TI A+ST     AI+I+RLSGP   Q+ + I K  K K      S    +G        
Sbjct: 2   DTIAAISTPMGEGAIAIVRLSGPEAIQIADKIYKGPKGKTLSSVESHTIHYGHIVDRPSD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R++++ ++ V  +P +FT ED  E + HGGI  VN +L+ LA     RLA PGEF++RAF
Sbjct: 62  RVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    ++M  M G LS+L  +   ++    + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRSEILETLAHVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     +K +I + +   + G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEYDDVEEMTHQILVEKATAVKKEIEALLRTSEQGKILREGLSTVIIGRPNVGKSSLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 241 LVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300

Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------- 342
           ADLILL+  +N  +E+S          + +D I I  K+DL +   TE    L       
Sbjct: 301 ADLILLV--LNYSEELSEEDVKLFEAVEGMDVIVILNKTDLEAKIDTERVRELANGRPVV 358

Query: 343 -ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S    EG+ +L   I+S+  +   +    +  S+ RH+  L Q  R +E A S  E+D
Sbjct: 359 TTSLLKEEGINDLEEAIQSLFYTGAIESGDLTYVSNTRHISILQQAKRAIEDALSGIEQD 418

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 419 VPIDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 459


>gi|190171224|gb|ACE63682.1| ThdF [Enterobacter pulveris]
 gi|190171234|gb|ACE63687.1| ThdF [Enterobacter pulveris]
          Length = 439

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 153/433 (35%), Positives = 239/433 (55%), Gaps = 23/433 (5%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P PR A    F   D   LD+G+ + FP P SFTGED
Sbjct: 11  VGILRISGKLARDVAQAVLGKL-PKPRYADYLPFKDSDNTPLDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   +  +
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNTV 188

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL 
Sbjct: 189 IADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR 248

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS---- 315
             + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +   +     
Sbjct: 249 EHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGTTTDAVDPAQI 308

Query: 316 -------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIKSIL 362
                   P+ +    +  K+D+       TE   H    +S+ +G+G+E L + +KS +
Sbjct: 309 WPDFMARLPQTLPITVVRNKADVTGEAPGLTEVNGHSLIRLSARSGDGVEVLRDHLKSSM 368

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKIT 420
                 +     + +RHL  L +   +L+   A L     G +++AE LRLA  SL +IT
Sbjct: 369 GFD-TNMEGGFLARRRHLQALEEAAAHLQQGKAQLLGAWAG-ELLAEELRLAQQSLSEIT 426

Query: 421 GCVDVEQLLDIIF 433
           G    + LL  IF
Sbjct: 427 GEFTSDDLLGRIF 439


>gi|68472595|ref|XP_719616.1| potential mitochondrial tRNA modification protein [Candida albicans
           SC5314]
 gi|68472852|ref|XP_719491.1| potential mitochondrial tRNA modification protein [Candida albicans
           SC5314]
 gi|46441310|gb|EAL00608.1| potential mitochondrial tRNA modification protein [Candida albicans
           SC5314]
 gi|46441440|gb|EAL00737.1| potential mitochondrial tRNA modification protein [Candida albicans
           SC5314]
          Length = 529

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 165/488 (33%), Positives = 272/488 (55%), Gaps = 54/488 (11%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59
           N  K T+FA+ST    SAI+++R+SGP S +   +     K P  R AS+R  +  +   
Sbjct: 47  NPLKPTVFALSTKFGKSAIAVVRISGPQSKYIYHKLTNSTKPPKNRIASVRKLYSPEPHS 106

Query: 60  -----ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM--PN----LRLA 108
                 LD+ L +  P P+++TGED  E H+HGG+A++  +L+ + K+  PN    +R A
Sbjct: 107 NKKSVFLDEALTLFLPGPKTYTGEDLLELHLHGGVAIIKSVLQSIKKLHDPNNGVIIRQA 166

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
           + GEFS++AF NG++DL E E + D+I++ETE QR  S+   SG+    + +W +++ + 
Sbjct: 167 DRGEFSKQAFYNGRLDLTELEGINDMINAETESQRLASLASSSGQTKIEFMKWRNEIINQ 226

Query: 169 RSFIEADLDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            + +   +DF E+ D++      ++V  +I  ++++I +++S+ K  +I+ NG ++ +LG
Sbjct: 227 MANLTMIIDFGEDHDIEETDRMIRDVKENIAKIESEIKAYLSKVKSSQILLNGIQLALLG 286

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIV 284
             NAGKSS+ N LA KD AIV++I GTTRD+L I L++ GY V + DTAGIR  E  D +
Sbjct: 287 PPNAGKSSILNILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFEEADSI 346

Query: 285 EKEGIKRTFLEVENAD-LILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYST 334
           E+EGIKR       AD +I++L  ++ +KE              N   + +  K DL+++
Sbjct: 347 EQEGIKRAKQRSMLADFVIVVLDPMSVEKEPLELKEHLKTLVKANKQMLIVLNKQDLFAS 406

Query: 335 YTEE--------------YDHLISSFTGEGLEELINKIKSILSNKFKKL-------PFSI 373
            +EE              Y H++S  TG G++ L    + +L  KFK L       P  +
Sbjct: 407 RSEEMISNYSRLLDLPKNYFHVVSCSTGSGIDNL----QKLLIEKFKDLSQSETSNPIIV 462

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDII 432
            S  + +        + E     + +  L +  + LR +   +GKITG  +D+E++LD++
Sbjct: 463 SSRVQDILENDILFGFKEFYHWADAEDVL-VATDCLRQSVDGIGKITGQSIDLEEILDVV 521

Query: 433 FSKFCIGK 440
           FS FCIGK
Sbjct: 522 FSSFCIGK 529


>gi|50547191|ref|XP_501065.1| YALI0B18612p [Yarrowia lipolytica]
 gi|49646931|emb|CAG83318.1| YALI0B18612p [Yarrowia lipolytica]
          Length = 481

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 175/484 (36%), Positives = 268/484 (55%), Gaps = 48/484 (9%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK----ASLRYFFGL 56
           + + K TI+A+S+ +  +A+SIIR+SGP    V + +  + K  P +    A+L+  F  
Sbjct: 2   LRNTKSTIYALSSASGRAAVSIIRVSGPDTSTVYKQLTNRTKTPPHRVATLATLKQPFSN 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM-PN----LRLANPG 111
             ++LD  L + F  P+S++GED  E HVHGG AVV  +L+ + ++ P+    +R A PG
Sbjct: 62  PPKVLDHALTLFFNGPKSYSGEDLLELHVHGGPAVVRAVLDSIQRVKPSSGVPIRYAEPG 121

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EFS+RAF NGK+D+ + E +  +I +ETE QR+ S+E  SG    +Y  W + +    + 
Sbjct: 122 EFSKRAFYNGKLDMTQIEGIGSMIEAETESQRQASLEASSGHSKKVYEAWREGIVENMAL 181

Query: 172 IEADLDFSEEEDVQNFSSKEVL-----NDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
           + A +DFS+  D Q   S EVL      ++  L  DI +H++Q +  EI+R+G  + +LG
Sbjct: 182 LTALIDFSD--DNQGIDSGEVLVGKTKENVGRLLKDIKNHLAQVQRSEILRSGIVMSLLG 239

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIV 284
             NAGKSSL N LAK++ AIV++  GTTRDV+ I LD+ GY V + DTAG+R  E   +V
Sbjct: 240 APNAGKSSLLNILAKRNAAIVSEEAGTTRDVVEIGLDVAGYKVVLGDTAGLRGGEQVGMV 299

Query: 285 EKEGIKRTFLEVE----------------NADLILLLKEIN-SKKEISFPKNI-----DF 322
           EKEGIKR     +                ++D+I  LK+++ ++K+I    N      D 
Sbjct: 300 EKEGIKRARERFQKSHMIMAVLPADGCDHSSDIIAELKQLHAAEKQIVVAINKTDLVEDH 359

Query: 323 IFIGTKSDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKR 378
           +    K+ L        D +I  S     GLE L+ K+ S  S K   +  S P  + +R
Sbjct: 360 VVEAFKNRLMEEIGLPRDSIIPVSCIASSGLETLLAKLSSEFS-KITTIEGSDPVLASQR 418

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIA-ENLRLASVSLGKITG-CVDVEQLLDIIFSKF 436
              +L  TV    + +  E D    + A E LR+A+  +G ITG  + +E++L  +FSKF
Sbjct: 419 VKDNLIATV-IPALETFMEYDLEAVVFATEELRMAAEGIGMITGQGIGIEEVLGAVFSKF 477

Query: 437 CIGK 440
           CIGK
Sbjct: 478 CIGK 481


>gi|257455160|ref|ZP_05620398.1| tRNA modification GTPase TrmE [Enhydrobacter aerosaccus SK60]
 gi|257447493|gb|EEV22498.1| tRNA modification GTPase TrmE [Enhydrobacter aerosaccus SK60]
          Length = 463

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 161/460 (35%), Positives = 257/460 (55%), Gaps = 34/460 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      + +IRLSGP+ +Q+   +  ++   PR A    F+  D  ++D+GL+
Sbjct: 12  TIAAIATPIGRGGVGVIRLSGPNSYQIALALTGRQAFKPRFAHFCRFYDSDDTVIDEGLV 71

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP+P SFTGED  E   HGG+ +   +L  + ++     A  GEFS RAF+N K+DL+
Sbjct: 72  LYFPAPHSFTGEDVIELQGHGGMILQQQLLTRVFEL-GANQAVAGEFSARAFDNDKLDLV 130

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE++AD I + +    + +M  ++GE S      +++L  +R ++EA +DF +EE V  
Sbjct: 131 QAEAIADAIDATSVAAAKSAMRSLTGEFSQKINALLEQLIQLRLYVEAAIDFPDEEGVDF 190

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            + + +   +  +   +++ ++  K G+++R+G  +VI G  NAGKSSL N LA ++ AI
Sbjct: 191 LADEHIAKQLRQVCEQLNNVLATAKQGQLLRDGVSVVIAGRPNAGKSSLLNRLAGQERAI 250

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTDI GTTRD+L   + L G  + ++DTAG+R+TDDIVE+ GI+R    +  ADL+L++ 
Sbjct: 251 VTDIAGTTRDILQETIVLNGLTLNLTDTAGLRQTDDIVEQAGIERARQAITQADLLLMVY 310

Query: 307 EINSKKEI---------SFPKNIDFIFIGTKSDL----------YSTYTEEYDHL-ISSF 346
           + + + E          S P     + I  K DL          +S+  + Y  + +S  
Sbjct: 311 DAHREHEPLRLATELFGSLPNANSILMIANKIDLSDNHQNLPKQFSSQEQIYHPVYVSCK 370

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402
              GLEEL+N+I   +   F     S+ +  RHL  L +T    +MA L E D  L    
Sbjct: 371 YDTGLEELVNQICDKVG--FHPPENSLIARTRHLDALRRT----QMA-LQEADEQLHLFH 423

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE+LR A +SL +ITG    + LL  IF  FCIGK
Sbjct: 424 AGELVAESLRQAQISLNEITGEFTADDLLGKIFGSFCIGK 463


>gi|296330032|ref|ZP_06872516.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305676756|ref|YP_003868428.1| tRNA modification GTPase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296153071|gb|EFG93936.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305415000|gb|ADM40119.1| tRNA modification GTPase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 459

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 161/461 (34%), Positives = 260/461 (56%), Gaps = 29/461 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LDG 58
           +TI A+ST     AI+I+RLSGP   Q+ + I K  K K      S    +G        
Sbjct: 2   DTIAAISTPMGEGAIAIVRLSGPEAIQIADKIYKGPKGKTLSSVESHTIHYGHIVDRPSD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R++++ ++ V  +P +FT ED  E + HGGI  VN +L+ LA     RLA PGEF++RAF
Sbjct: 62  RVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    ++M  M G LS+L  +   ++    + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRSEILETLAHVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     +K +I + +   + G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEYDDVEEMTHQLLVEKATAVKKEIEALLRTSEQGKILREGLSTVIIGRPNVGKSSLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 241 LVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300

Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHLISS----- 345
           ADLILL+  +N  +E+S          + +D I I  K+DL +    E    +++     
Sbjct: 301 ADLILLV--LNYSEELSEEDVKLFEAVEGMDVIVIMNKTDLEAKIDSERVRELANGRPVV 358

Query: 346 ----FTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
                  EG+ +L   I+S+  +   +    +  S+ RH+  L Q  R +E A S  E+D
Sbjct: 359 TTSLLKEEGINDLEEAIQSLFYTGAIESGDLTYVSNTRHISILQQAKRAIEDALSGIEQD 418

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 419 VPIDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 459


>gi|296137607|ref|YP_003644849.1| tRNA modification GTPase TrmE [Thiomonas intermedia K12]
 gi|295797729|gb|ADG32519.1| tRNA modification GTPase TrmE [Thiomonas intermedia K12]
          Length = 472

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 162/472 (34%), Positives = 253/472 (53%), Gaps = 35/472 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + + I A++T     A+ I+R SG S   + + I  +    PR A+   F    G +
Sbjct: 4   LAQDADPIVAIATAPGRGAVGIVRASGKSLGALAQAITGRAL-LPRHATYLPFGDGQGGV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEFSRRA 117
           +D+GL + FP+P S+TGED  E  +HGG  V+  +L  L        LR+A PGEF+RRA
Sbjct: 63  IDRGLALFFPAPHSYTGEDVLELQIHGGPVVLQLLLARLLELGASSRLRVAQPGEFTRRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL +AES+ADLI + TE   R +   ++GELS        +L  +R  +EA LD
Sbjct: 123 FLNGKLDLAQAESVADLIEASTEAAARSATRALAGELSQAVRALAAELVELRLLVEATLD 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EE D+      +    +  L+  +    ++ + G ++R G ++V+ G  N GKSSL N
Sbjct: 183 FPEE-DIDFLRQAQAQRRLQALQQTLQQVQAKTRQGALLREGLQVVLAGQPNVGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           ALA  ++AIVT I GTTRD ++  + +EG  + I DTAG+R++ D VE+ G++R++  + 
Sbjct: 242 ALAGAELAIVTPIAGTTRDKVSQTIQIEGVPLHIVDTAGLRDSADAVERIGVERSWHAIA 301

Query: 298 NADLILLLKEI---------NSKKEIS--FPKNIDFIFIGTKSD-------------LYS 333
            AD+++ L ++          ++ EI+   PK    + +  K D             +++
Sbjct: 302 GADVVVFLHDLTRLQAPGYAQAEAEIARGLPKGAPLLHVFNKRDCVETGAQARLLPQVWA 361

Query: 334 TYTEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            +  E      IS+ TG+GL+ L  K+  +   +       I + +RH+  L QT ++L 
Sbjct: 362 QWGVEAGESVWISAATGDGLQGLRLKLLQLAGAQPTSEGVFI-ARQRHVQALEQTGQHLG 420

Query: 392 MA-SLNEKD--CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  L E D    LD++AE LRL+  +L  ITG    + LL  IFS FCIGK
Sbjct: 421 AALHLIELDAQAPLDLLAEELRLSHQALMAITGEYTPDDLLGAIFSSFCIGK 472


>gi|225629758|ref|ZP_03787706.1| tRNA modification GTPase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591387|gb|EEH12479.1| tRNA modification GTPase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 439

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 135/316 (42%), Positives = 196/316 (62%), Gaps = 2/316 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M +  ETIFA+ST    S +++IR+SG    +       KK+  PR A+L   +    ++
Sbjct: 1   MTNTNETIFALSTVFGKSGVAVIRISGNYALKALNHFHIKKEIKPRFATLVDLYDDSSQL 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G++I FP+P SFTGED  E  VHG  AV+  ILEEL+K+    +A PGEFS RAF N
Sbjct: 61  IDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEELSKV--FVMAKPGEFSLRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK DL + E +ADLI +ET+MQ + +++ +SGEL  LY  W  +L  I+S IEA +DF E
Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   +    +++ N++  L   I  H++  + GE +R G  IVI G  N GKS+LFN LA
Sbjct: 179 DIWAEKSELEKINNEVQSLVQLIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K+D+AIV++  GTTRD+L   +D+ GY + +SDTAGIRE+ D +E EGI R       AD
Sbjct: 239 KRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIELEGISRAKKRSFEAD 298

Query: 301 LILLLKEINSKKEISF 316
           L + L     + ++++
Sbjct: 299 LRIELFPFQQRHDVNY 314


>gi|187930816|ref|YP_001901303.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12J]
 gi|309780188|ref|ZP_07674939.1| tRNA modification GTPase TrmE [Ralstonia sp. 5_7_47FAA]
 gi|187727706|gb|ACD28871.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12J]
 gi|308920891|gb|EFP66537.1| tRNA modification GTPase TrmE [Ralstonia sp. 5_7_47FAA]
          Length = 481

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 153/459 (33%), Positives = 239/459 (52%), Gaps = 29/459 (6%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A++T      I ++R+SGP    V   +C +    PR+A+   F   DG  +D+G+ +
Sbjct: 26  IAAIATAPGRGGIGVVRVSGPDVRAVMHAVCGRLL-TPRQATYLPFLDADGNAIDRGIAL 84

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEFSRRAFENGKID 124
            FP+P S+TGED  E   HGG  V+  +L+      +   LR+A PGEF+RRAF N K+D
Sbjct: 85  WFPAPHSYTGEDVLELQGHGGPVVMQLLLQRCLTAGREIGLRVAEPGEFTRRAFLNDKMD 144

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + TE   R +   + G  S      ++++ H+R  +EA LDF EEE +
Sbjct: 145 LAQAEAVADLIEASTEAAARSAARSLDGAFSQTVHALVERVIHLRMLVEATLDFPEEE-I 203

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +    +  ++  +   ++Q + G ++R G  +V+ G  N GKSSL NALA  ++
Sbjct: 204 DFLEASDARGQLANIRTAVDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAEL 263

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT+  +  AD++L 
Sbjct: 264 AIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLH 323

Query: 305 L---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTY------TEEYDHLI 343
           L                 I+++     P  +  + +  K DL           E  +  +
Sbjct: 324 LLDATDYRAKGLSPEDTAIDARIAEHVPAGVPTLRVINKIDLSGVAIPCRVDAEPPEVWL 383

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCG 401
           S+  G G+E L   +  I   +       + + +RHL  L     +L        ++   
Sbjct: 384 SARDGLGVELLRAALLEIAGWQGGGEGLYL-ARERHLAALRTAREHLATAAEHAAQQAQS 442

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 443 LDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 481


>gi|254567177|ref|XP_002490699.1| Mitochondrial protein, forms a heterodimer complex with Mto1p
           [Pichia pastoris GS115]
 gi|238030495|emb|CAY68419.1| Mitochondrial protein, forms a heterodimer complex with Mto1p
           [Pichia pastoris GS115]
 gi|328351084|emb|CCA37484.1| tRNA modification GTPase mnmE [Pichia pastoris CBS 7435]
          Length = 503

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 176/485 (36%), Positives = 263/485 (54%), Gaps = 58/485 (11%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGL-DGRIL 61
           TI+A+ST    SAI++IR+SGPS   V + + +    K+    R AS+R  +    G +L
Sbjct: 26  TIYALSTKQGRSAIAVIRISGPSTLDVFKRLSRIDDDKRLQRHRLASVRKLYDPKSGVLL 85

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM----PNLRLANPGEFSRRA 117
           D+ L + F  P S+TGED  E HVHGG AVV  +L  +  +      +R A+PGEFSRR 
Sbjct: 86  DEALSLFFKGPNSYTGEDVLELHVHGGNAVVKCVLNAIKYLHESAAPIRYADPGEFSRRG 145

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F+NGK DL E E + D+I +ETE QR  ++  + GE   L+ +W  ++    + +   +D
Sbjct: 146 FQNGKFDLTEVEGVRDMIDAETEFQRVSALTSLKGETRHLFHRWRTEIVKNVALLTTVID 205

Query: 178 FSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           F E+ D++  +     V  +I  L+ +I +++ + K  EI+  G K+ ++G  NAGKSSL
Sbjct: 206 FGEDHDIEEVNELFGRVAKNIDLLEAEIKNYLEKVKRSEILMKGIKLSLIGPPNAGKSSL 265

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKRTF 293
            N L+  D  IV+DIPGTTRD + I LD+ GY V I DTAGIR  E  DI+EKEGIKR  
Sbjct: 266 LNVLSDSDSVIVSDIPGTTRDSIDIPLDVGGYKVVIGDTAGIRSFEDADIIEKEGIKRAT 325

Query: 294 LEVENADLILL-----LKEINSK--KEISFPKNI------DFIFIGTKSDL------YST 334
            +  N+D+ ++     L+EINS   K I   K+       + +    KSDL      +S 
Sbjct: 326 TKSLNSDVAVIILPVDLREINSDLIKHIENLKSSTSSCSENILVALNKSDLLEDPNQHSQ 385

Query: 335 YTEEYDH----------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             +++            LIS    +G++ L+      L  +FK +  +  S    +   S
Sbjct: 386 IIKQFSEALKLPESTFCLISCANRDGIDSLMGT----LIERFKIITLTTNSDPISISQRS 441

Query: 385 QTV-------RYLEMASLNEKDCGLDIIA-ENLRLASVSLGKITG-CVDVEQLLDIIFSK 435
           Q +        + E  S N  D   D++A E+LR +   +GKITG  V +E++L ++FS 
Sbjct: 442 QDILSNDVLHGFQEFRSYNGID---DVLATESLRYSVEGIGKITGEAVGIEEILGVVFSS 498

Query: 436 FCIGK 440
           FCIGK
Sbjct: 499 FCIGK 503


>gi|7994696|sp|O51830|MNME_BUCMP RecName: Full=tRNA modification GTPase mnmE
 gi|2754806|gb|AAC04235.1| ThdF [Buchnera aphidicola (Myzus persicae)]
          Length = 453

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 173/462 (37%), Positives = 258/462 (55%), Gaps = 40/462 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A  T    SA+SI+R+SG     V + +     P  R A+   F G +  +LD+G+
Sbjct: 5   ETIVAPVTSPGKSAVSILRISGSQTKIVAKKVLGSI-PKARFATYSKFLGKNSVVLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HG   +++ +++ +  + N+R+A PGEFS RAF NGKIDL
Sbjct: 64  SLWFPAPFSFTGEDVLELQGHGSPLIMDLLIKRITSIENVRMAKPGEFSERAFLNGKIDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ DLI+SETE   R S+  + G+ SS   Q I  +   R+ IE+ +DFSEEE   
Sbjct: 124 IQAEAIDDLINSETESSIRASLHSLQGDFSSHIKQLISTVIEFRTNIESSIDFSEEEIDI 183

Query: 186 NFSS------KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +  S      KE+    +  K  IS        G +++ G KIVI G  NAGKSSL NAL
Sbjct: 184 DLKSLIYIKLKELEEKFIKTKKVISE-------GSLLKEGKKIVIAGPPNAGKSSLLNAL 236

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           +  + AIVT IPGTTRD+L  ++ + G   ++ DTAG+R+T + +E+ GI R +  ++ A
Sbjct: 237 SHSNRAIVTKIPGTTRDLLYENISINGISCQLIDTAGLRDTKNEIERIGIFRAWEVIKKA 296

Query: 300 DLILLLKEINSK------------KEISFPKNIDFIFIGTKSDLYSTY--TEEYDHL--- 342
           D +L + +  +K            + IS   NI   FI  K+DL      TE+ + L   
Sbjct: 297 DHVLFVIDKTTKQSEQKKICNEFIQNISV-NNIQITFILNKNDLVQDKFNTEKIESLLFI 355

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK--- 398
            IS+ TG+G+++L   I  I  N+ K+  F   + +RH+  ++  + Y E     +K   
Sbjct: 356 NISARTGQGIDKLRKHIVKIAKNENKEGVF--IARRRHINQIN--LAYNEFLMAKKKWII 411

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              ++++AE+LRL +  LG+ITG      LL  IFS FCIGK
Sbjct: 412 SKNIELLAESLRLINRFLGEITGRFTSNDLLKRIFSSFCIGK 453


>gi|16081154|ref|NP_391982.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221312085|ref|ZP_03593932.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221316410|ref|ZP_03598215.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221321323|ref|ZP_03602617.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221325606|ref|ZP_03606900.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|135725|sp|P25811|MNME_BACSU RecName: Full=tRNA modification GTPase mnmE
 gi|40025|emb|CAA44403.1| unnamed protein product [Bacillus subtilis]
 gi|467386|dbj|BAA05232.1| thiophen and furan oxidation [Bacillus subtilis]
 gi|2636649|emb|CAB16139.1| tRNA modification GTPase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 459

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 164/461 (35%), Positives = 259/461 (56%), Gaps = 29/461 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LDG 58
           +TI A+ST     AI+I+RLSGP   Q+ + I K  K K      S    +G        
Sbjct: 2   DTIAAISTPMGEGAIAIVRLSGPEAIQIADKIYKGPKGKTLSSVESHTIHYGHIVDRPSD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R++++ ++ V  +P +FT ED  E + HGGI  VN +L+ LA     RLA PGEF++RAF
Sbjct: 62  RVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    ++M  M G LS+L  +   ++    + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRSEILETLAHVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     +K +I + +   + G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEYDDVEEMTHQILVEKATAVKKEIETLLRTSEQGKILREGLSTVIIGRPNVGKSSLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 241 LVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300

Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------- 342
           ADLILL+  +N  +E+S          + +D I I  K+DL     TE    L       
Sbjct: 301 ADLILLV--LNYSEELSEEDVKLFEAVEGMDVIVILNKTDLEPKIDTERVRELANGRPVV 358

Query: 343 -ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S    EG+ +L   I+S+  +   +    +  S+ RH+  L Q  R +E A S  E+D
Sbjct: 359 TTSLLKEEGINDLEEAIQSLFYTGAIESGDLTYVSNTRHITILQQAKRAIEDALSGIEQD 418

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 419 VPIDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 459


>gi|254490328|ref|ZP_05103517.1| tRNA modification GTPase TrmE [Methylophaga thiooxidans DMS010]
 gi|224464461|gb|EEF80721.1| tRNA modification GTPase TrmE [Methylophaga thiooxydans DMS010]
          Length = 419

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 165/420 (39%), Positives = 233/420 (55%), Gaps = 32/420 (7%)

Query: 43  PFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102
           P PR A   +F   D  I+D G+ + FP P SFTGED  E   HG   V++ + +   ++
Sbjct: 10  PKPRYAQFCHFREADDTIIDSGIALYFPGPASFTGEDVVELQGHGSPLVMDRLCQRAIEL 69

Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162
              R+A PGEFS RAF N K+DL +AE++ADLI S TE   R +M  + G+ S+    ++
Sbjct: 70  -GARMARPGEFSERAFLNNKMDLAQAEAVADLIESSTEQAARSAMRSLQGDFSNRINAFL 128

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNG 219
           ++LTH+R ++EA +DF++EE +   +  +V   L D+L   + I+    QG+L   +R G
Sbjct: 129 EELTHLRMYVEASIDFADEE-IDFLAEAQVDKQLQDLLTTLDGIAGSARQGRL---LREG 184

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             +V+ G  NAGKSSL N LA  D AIVTD+ GTTRDVL   + L+G  ++ISDTAG+ E
Sbjct: 185 ISVVLAGQPNAGKSSLHNQLAGHDAAIVTDVAGTTRDVLREQIHLDGLPLRISDTAGLHE 244

Query: 280 -TDDIVEKEGIKRTFLEVENADLILL-------LKEINSKKEISFPKNIDFIFIGTKSDL 331
            T DIVE EGI+RT  E+  AD ILL       +   ++K     P +     I  K D 
Sbjct: 245 ATSDIVELEGIRRTQNELAQADHILLIIDDSLGMTPQDNKILNDMPADKPLTVIRNKIDR 304

Query: 332 YSTYTEEYDH------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
                 E          +S+ TGEG+E L   +   +    ++    I + +RHL  LS+
Sbjct: 305 SGHQIGETVEAGRQTIFLSAKTGEGMELLRQHLFEAVGYHPEEEGVFI-ARRRHLDALSR 363

Query: 386 TVRYLEMASLNEKDC--GL---DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 +A  +  DC  GL   +++AE LR A  +LG+ITG    E LLD IFS FCIGK
Sbjct: 364 A----RLAISHGYDCLAGLGAGELLAEELRQAQNALGEITGTFTTEDLLDHIFSSFCIGK 419


>gi|311070643|ref|YP_003975566.1| tRNA modification GTPase TrmE [Bacillus atrophaeus 1942]
 gi|310871160|gb|ADP34635.1| tRNA modification GTPase TrmE [Bacillus atrophaeus 1942]
          Length = 459

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 163/462 (35%), Positives = 264/462 (57%), Gaps = 31/462 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG--LD---G 58
           +TI A+ST     AI+I+RLSGP   Q+ + + K  K K      S    +G  +D    
Sbjct: 2   DTIAAISTPMGEGAIAIVRLSGPEAIQIADRMYKGPKGKTISSAESHTIHYGHIVDRSTQ 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R++++ ++ V  +P +FT ED  E + HGGI  VN +L+ LA     RLA PGEF++RAF
Sbjct: 62  RVVEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    ++M  M G LS+L  +  ++L    + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRNELLETLAHVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     +K +I + ++  + G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEYDDVEEMTHQLLIEKASSVKKEIDALLTTSEQGKILREGLSTVIIGRPNVGKSSLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVEK G++R+   ++ 
Sbjct: 241 LVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRQVLKE 300

Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHLISS----- 345
           ADLILL+  +N  +E+S          K +D I I  K+DL      +    +++     
Sbjct: 301 ADLILLV--LNYSEELSEEDVKLFEAVKGMDVIVILNKTDLEPKIDADRVKELANGRPVV 358

Query: 346 ----FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EK 398
                  EG+ +L   I+S+  +   +    +  S+ RH+  L +  R +E A LN  E+
Sbjct: 359 TTSLLKEEGITDLEEAIQSLFFTGTIESGDLTYVSNTRHISILHEAKRAIEDA-LNGIEQ 417

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  +D++  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 418 DVPIDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 459


>gi|312081419|ref|XP_003143020.1| hypothetical protein LOAG_07439 [Loa loa]
 gi|307761818|gb|EFO21052.1| hypothetical protein LOAG_07439 [Loa loa]
          Length = 451

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 170/457 (37%), Positives = 262/457 (57%), Gaps = 44/457 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFGLDGRILDK 63
           TIFAVS+GALP+AIS+IR+SG    +  E +  +KK  PR+   A++R     DG ++D+
Sbjct: 16  TIFAVSSGALPAAISVIRVSGKESRRCLEQLTGRKKILPRQLFYANIRR----DGELIDR 71

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ +  P P++ TGED AEF+VHG  AVV+ +L+ L +  N++LA  GEF++RAF NGK+
Sbjct: 72  GMAVFLPGPKTSTGEDVAEFYVHGSRAVVDCLLQALGQFDNVQLARAGEFTKRAFFNGKM 131

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
            L E +SLA L++++T+ QRRL++      +++L  +   +L  +R+ +EA +DF   +D
Sbjct: 132 TLQEVQSLAYLLAAQTQRQRRLAL-----RMNTLGKK---QLIEVRASVEASIDFG--DD 181

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V  F  +++   I  + +++S+   Q   G +I  G +IVILG +N GKSSLFN +A +D
Sbjct: 182 VW-FQWEDIRVVISLMISELSNIQEQMHRGMLINEGLRIVILGQTNVGKSSLFNRMANRD 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENADLI 302
           +AIV+DI GTTRD L   + L    V I DTAGIRE   D +E EGI+RT      AD+ 
Sbjct: 241 MAIVSDIGGTTRDSLEATIQLSSIPVTIVDTAGIREILLDSLEAEGIRRTLRRAAEADIA 300

Query: 303 LLL----------KEINSKKEISFPKNIDFIFIG-TKSDLYSTYTE---EYDHL-ISSFT 347
           +++           ++ S       K    +F+   K D+ +        +  + IS  +
Sbjct: 301 IVVIDSSMCKDFETDVRSVLSWCHLKKETPVFVALNKCDICNVPNNIVLPWPAVNISCIS 360

Query: 348 GEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
           GEG+  L+  I   +S   +  P S    + S + H   L +T+  L  A L   D    
Sbjct: 361 GEGISSLLEIICEHIS---ELCPVSDDSTLVSSQAHRLLLKETILVLRKA-LEVNDVA-- 414

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE LR  S  + +++G +  EQ+LD IFS FCIGK
Sbjct: 415 VVAELLRDVSDYISEMSGTIVNEQILDQIFSSFCIGK 451


>gi|88798543|ref|ZP_01114127.1| tRNA modification GTPase [Reinekea sp. MED297]
 gi|88778643|gb|EAR09834.1| tRNA modification GTPase [Reinekea sp. MED297]
          Length = 455

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 163/464 (35%), Positives = 249/464 (53%), Gaps = 33/464 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-GLDGR 59
           M    +TI A++T      + I+R+SG +   V E I KK+ P PR A    F+    G 
Sbjct: 1   MIASNDTITAIATPPGRGGVGIVRVSGKAATAVAEKILKKR-PEPRYAHYGPFYHPTQGD 59

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+G+ + FP P SFTGED  E   HGG  ++  +LE +  +   RLA PGEFS RAF 
Sbjct: 60  VIDEGIALFFPGPNSFTGEDVLELQGHGGPVILELLLEAVCSL-GCRLARPGEFSERAFL 118

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N KIDL +AE++ADLI + +    R ++  + G+ S+   Q +++L  +R ++EA +DF 
Sbjct: 119 NDKIDLTQAEAIADLIDASSREAARSAVRSLQGDFSNAVHQLVEQLIQLRIYVEAAIDFP 178

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EEE +   S  +V  D+  + + ++   +    G ++R+G  +VI G  NAGKSSL NAL
Sbjct: 179 EEE-IDFLSDGKVETDLRQVMSQLADVQATANQGSLMRDGMTVVIAGRPNAGKSSLLNAL 237

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           + ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ G++R + E+E A
Sbjct: 238 SGQERAIVTDIAGTTRDVLKEHIHIDGMPLHIIDTAGLRDAPDAVERIGVERAWAEIETA 297

Query: 300 DLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342
           D ILL+ +      +             P+      I  K D     T E   L      
Sbjct: 298 DRILLMVDATDTDAVDPETIWPDFMHRLPERAQLTVIRNKID----QTGEAAGLNMDSAV 353

Query: 343 ----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLN 396
               +S+    G+  L + +K ++  +       I + KRHL  L +    L+  +A L 
Sbjct: 354 PVIRLSAQNRAGVNHLRDHLKQLMGFEGNHESGFI-ARKRHLDALLRAAEALDNGLAQLL 412

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G +++AE+LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 413 GPAAG-ELLAEDLRVAQNALNEITGEFSPDDLLGRIFSSFCIGK 455


>gi|94676628|ref|YP_588606.1| tRNA modification GTPase TrmE [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|166200469|sp|Q1LTV8|MNME_BAUCH RecName: Full=tRNA modification GTPase mnmE
 gi|94219778|gb|ABF13937.1| tRNA modification GTPase TrmE [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 457

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 176/468 (37%), Positives = 255/468 (54%), Gaps = 39/468 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      I I+R+SG    +V + +  K  P  RKA    F+  +G I
Sbjct: 1   MNLTFDTIAAQATPNGRGGIGIVRVSGTLTTRVAKELLGKV-PIQRKAEYLTFYHQNGNI 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +DKG+ + FP P SFTGED  E H HGG  V++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 60  IDKGIALFFPGPNSFTGEDILELHGHGGPVVLDLLLQRIITLPGVRIARPGEFSERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            KIDL +AE++ADLI + +    R ++  + G  S+     ++KLT +R  IEA ++F E
Sbjct: 120 EKIDLAQAEAIADLIDANSAQAARAAISSLQGVFSTTINDLVEKLTSLRVDIEAKINFPE 179

Query: 181 EEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           E +      K++   L+  +   N I +   QG    I+R G KIVI G  N GKSS+ N
Sbjct: 180 ENETNVSIDKKIIANLDQAILSINKIRTAAYQGC---ILREGIKIVITGKPNVGKSSIIN 236

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEV 296
           ALA  +VAIVT+I GTTRD+L   + L+G  V I DTAG+   + + VEK GI+R + E+
Sbjct: 237 ALAGHEVAIVTNIAGTTRDILREYIYLDGIPVSIIDTAGLCNVSHNEVEKIGIQRAWNEI 296

Query: 297 ENADLILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYS-----TYTEEYD 340
           + AD ILL+ + ++ K             +FP       I  K+D+       T    Y 
Sbjct: 297 KQADHILLVVDSSTTKLSEQDKLCNTLIANFPYKTPVTIIRNKADITGEKIGETLNNNYS 356

Query: 341 HL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASL 395
            + IS+ +  G+E L+  +  I+S     LP S      + +RHL  L  T  YL     
Sbjct: 357 VITISALSSLGIEILLKYLTKIIS-----LPSSTEGVFLARRRHLEALEITANYL--LQC 409

Query: 396 NEK---DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            EK      L++IAE+L+LA  +L +ITG     +LL  IFS+FC+GK
Sbjct: 410 KEKISFPTMLELIAEDLQLAHNALSQITGKFSSHELLKKIFSRFCLGK 457


>gi|42520794|ref|NP_966709.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|99034610|ref|ZP_01314568.1| hypothetical protein Wendoof_01000618 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|81831244|sp|Q73GH3|MNME_WOLPM RecName: Full=tRNA modification GTPase mnmE
 gi|42410534|gb|AAS14643.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 508

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 135/316 (42%), Positives = 196/316 (62%), Gaps = 2/316 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M +  ETIFA+ST    S +++IR+SG    +       KK+  PR A+L   +    ++
Sbjct: 1   MTNTNETIFALSTVFGKSGVAVIRISGNYALKALNHFHIKKEIKPRFATLVDLYDDSSQL 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G++I FP+P SFTGED  E  VHG  AV+  ILEEL+K+    +A PGEFS RAF N
Sbjct: 61  IDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEELSKV--FVMAKPGEFSLRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK DL + E +ADLI +ET+MQ + +++ +SGEL  LY  W  +L  I+S IEA +DF E
Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   +    +++ N++  L   I  H++  + GE +R G  IVI G  N GKS+LFN LA
Sbjct: 179 DIWAEKSELEKINNEVQSLVQLIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K+D+AIV++  GTTRD+L   +D+ GY + +SDTAGIRE+ D +E EGI R       AD
Sbjct: 239 KRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIELEGISRAKKRSFEAD 298

Query: 301 LILLLKEINSKKEISF 316
           L + L     + ++++
Sbjct: 299 LRIELFPFEQRHDVNY 314



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 57/94 (60%), Gaps = 8/94 (8%)

Query: 350 GLEELINKIKSILSNKF---KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
           G  +LI+ IK     KF   +  P  + + +RH  H+ + + +L+  ++   D  +++I+
Sbjct: 420 GTNKLISLIKEKAEEKFGHDRDTP--VITRQRHRNHMKKALEHLQRFNI---DNPIELIS 474

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+LRLA+  LG + G +DVE++L  +FS FC+GK
Sbjct: 475 EDLRLAAFELGAVIGIIDVEEILSSVFSNFCVGK 508


>gi|307103609|gb|EFN51868.1| hypothetical protein CHLNCDRAFT_8246 [Chlorella variabilis]
          Length = 469

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 152/482 (31%), Positives = 261/482 (54%), Gaps = 61/482 (12%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           TI+A+S+     A+++IR+SGP+    +   + + + P  RKA+L      +G +LD+GL
Sbjct: 1   TIYALSSAPGRGALAVIRISGPASDMALKHLMMRDELPPARKATLTSLTAPNGELLDRGL 60

Query: 66  LIVFPSPESFTG-EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ F +P SFTG ED AE H+HG  AVV+ + + L ++  LR A  GEF+RRAF+ GK+D
Sbjct: 61  VLRFQAPLSFTGGEDCAELHLHGSPAVVHAVQDALREL-RLRPAEAGEFARRAFDAGKLD 119

Query: 125 LLEA-------------------ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           L +A                   E LADL++++TE QRR ++   +  L+  +      L
Sbjct: 120 LTQARAQPHHAHLHAHHSAWLDVEGLADLLAADTESQRRQALLHSTAHLTVAF-----PL 174

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
             + + +EA +DF E+E +    +  VL  +  L+  +  H++    GE++R G +I I+
Sbjct: 175 PSVAARLEAVIDFGEDEGIAEDVAAGVLPLVCDLRQQLEGHLASAASGELVRTGVRIAIV 234

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  NAGKSSL N LA ++ AIV+  PGTTRDV+ + L+L G  V + D+AG+R+TD  +E
Sbjct: 235 GPPNAGKSSLLNLLAGQEAAIVSPAPGTTRDVVQVQLELGGVKVILIDSAGLRQTDCPIE 294

Query: 286 KEGIKRTFLEVENADLILLLKE---------INSKKEIS-----FPKNIDFIFIGTKSDL 331
            EG++R       A ++L L +         ++S+ +++      P  I  +++  K+DL
Sbjct: 295 AEGVRRAVAAAHQAHIVLHLADATSGAAADGVDSRGQLADVALPLPAQIVQLWVMNKADL 354

Query: 332 Y--------STYTEEYDHLISSFTGEGLEELINKIKS-----ILSNKFKKLPFSIPSHKR 378
                    +T       L+S  +G+G+++L+  ++      + S     +  ++ +  R
Sbjct: 355 VPGCHEAAGATVPPAPHLLVSCKSGQGIDQLLALLQQHVRALVASGGDGGMAGALVTRAR 414

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
           H      +V    + +L      L++  E +R A+ +LG++TG +D   +LD +F +FCI
Sbjct: 415 HKR---TSVPPDILVALQH----LEVQCEEVRAAARALGRVTGAIDTAMVLDSLFCEFCI 467

Query: 439 GK 440
           GK
Sbjct: 468 GK 469


>gi|254000528|ref|YP_003052591.1| tRNA modification GTPase TrmE [Methylovorus sp. SIP3-4]
 gi|253987207|gb|ACT52064.1| tRNA modification GTPase TrmE [Methylovorus sp. SIP3-4]
          Length = 446

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 162/449 (36%), Positives = 250/449 (55%), Gaps = 21/449 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      I ++R+SGP+  Q+   +     P PR A+   F   DG+++D G+
Sbjct: 5   DTIAAIATAPGSGGIGVVRISGPASAQIAAAVLGHCPP-PRHAAYLPFKEADGQLIDSGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I +  P S+TGED  E   HGG A++  +L    ++   R A PGEF+RRAF N K+DL
Sbjct: 64  AIFYAGPHSYTGEDVLELQAHGGPALMQLLLLRCLQL-GARQAEPGEFTRRAFLNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++AD+I++ T    R ++  +SGE S      ++ L ++R ++EA LDF EE D+ 
Sbjct: 123 AQAEAVADVINAATAEAARSAVRSLSGEFSRYIQDLLESLINLRMYVEACLDFPEE-DID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S   V   +  + + +       + G ++R G ++V++G  N GKSSL N LA ++VA
Sbjct: 182 FISQGRVAEKLQNIADALELVFKGARQGNLLREGIQVVLVGQPNVGKSSLMNQLAGEEVA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT I GTTRD +   + +EG  + + DTAG+RET+D VEK+GI RT+  +ENA+  LLL
Sbjct: 242 IVTPIAGTTRDTIKNVVQIEGVPLHLIDTAGLRETEDEVEKQGIARTWRALENANAALLL 301

Query: 306 KE-----INSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLE 352
            +       ++K I    P N+  I++  K DL+S    + +H       IS+  G GL+
Sbjct: 302 VDAAHGITETEKSILERLPANLPKIWVHNKIDLHSEQPRQREHEGELHLYISAKLGLGLD 361

Query: 353 ELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            L   +  I    ++    SI  +  RHL  L     +L+ A++  +    +++AE LRL
Sbjct: 362 ALKAHLLKIAG--WQPAGESIFMARTRHLQALQMVQGHLQNAAVYLEQP--ELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   L  ITG    + LL  IFS+FCIGK
Sbjct: 418 AQHVLSSITGEFTPDDLLGEIFSRFCIGK 446


>gi|241665032|ref|YP_002983392.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12D]
 gi|240867059|gb|ACS64720.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12D]
          Length = 481

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 152/459 (33%), Positives = 240/459 (52%), Gaps = 29/459 (6%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A++T      I ++R+SGP    V + +C +    PR+A+   F   +G  +D+G+ +
Sbjct: 26  IAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRVL-TPRQATYLPFLDAEGNAIDRGIAL 84

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEFSRRAFENGKID 124
            FP+P S+TGED  E   HGG  V+  +L+      +   LR+A PGEF+RRAF N K+D
Sbjct: 85  WFPAPHSYTGEDVLELQGHGGPVVMQLLLQRCLTAGREIGLRVAEPGEFTRRAFLNDKMD 144

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + TE   R +   + G  S      ++++ H+R  +EA LDF EEE +
Sbjct: 145 LAQAEAVADLIEASTEAAARSAARSLEGAFSQAVHALVERVIHLRMLVEATLDFPEEE-I 203

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +    +  ++  +   ++Q + G ++R G  +V+ G  N GKSSL NALA  ++
Sbjct: 204 DFLEASDARGQLAGIRTAVDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAEL 263

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT+  +  AD++L 
Sbjct: 264 AIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLH 323

Query: 305 L---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTY------TEEYDHLI 343
           L                 I+++     P  +  + +  K DL           E  +  +
Sbjct: 324 LLDATDYRAKGLSPEDTAIDARIAEHVPAGVPTLRVINKIDLSGVAIPGRVDAEPPEVWL 383

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCG 401
           S+  G G+E L   +  I   +       + + +RHL  L     +L        ++   
Sbjct: 384 SARDGLGVELLRAALLEIAGWQGGGEGLYL-ARERHLAALRTAREHLATAAEHAAQQAQS 442

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 443 LDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 481


>gi|90194080|gb|ABD92601.1| ThdF [Lonepinella koalarum]
          Length = 436

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 155/436 (35%), Positives = 248/436 (56%), Gaps = 27/436 (6%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SGP   +V + +  K    PR A+   F  +D  +LD+G+ + F SP SFTGE
Sbjct: 7   GVGILRVSGPLAMEVAQAVVGKALK-PRFANYLPFKNVDDTVLDQGIALFFKSPHSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF NGK+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQMVLDLLLKRILQVQGVRLARPGEFSEQAFLNGKLDLAQAEAIADLIDAT 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED--VQNFSSKEVLNDI 196
           +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE   + +   +  LN+I
Sbjct: 126 SEQAARSALKSLQGEFSNKVNQLVDNVIYLRTYVEAAIDFPDEEIDFLADGKIENKLNEI 185

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +   + + +   QG    I+R G K+VI G  NAGKSSL NALA +D AIVT+I GTTRD
Sbjct: 186 IVQLDKVRAEAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTNIAGTTRD 242

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------- 309
           VL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD +LL+ +         
Sbjct: 243 VLREHIHIDGMPLHIIDTAGLRDATDEVERIGINRAWHEIEQADRVLLMLDSTDADSADL 302

Query: 310 SKKEISF----PKNIDFIFIGTKSDLYSTYT---EEYDHL---ISSFTGEGLEELINKIK 359
           +K  + F    P+++    I  K+DL    T   EE  ++   +S+ T +G++ L   +K
Sbjct: 303 NKVRLEFLQKLPESLPVTIIRNKTDLSGENTGLSEENGYITIRLSAQTQQGVDLLREHLK 362

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLG 417
             +  +         + +RHL  L +   +L++    L +   G +++AE LRL    L 
Sbjct: 363 QTMGYQ-TTTEGGFLARRRHLEALEKAAEHLQLGHIQLTQFHAG-ELLAEELRLVQTYLS 420

Query: 418 KITGCVDVEQLLDIIF 433
           +ITG    + LL  IF
Sbjct: 421 EITGKFTSDDLLGNIF 436


>gi|332029663|gb|EGI69552.1| tRNA modification GTPase GTPBP3, mitochondrial [Acromyrmex
           echinatior]
          Length = 473

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 155/413 (37%), Positives = 225/413 (54%), Gaps = 41/413 (9%)

Query: 45  PRKASLRYFFGLDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP 103
           PR+A L+     + R ++D GL + FP P SFTGEDS EFHVHGG A++  +++ L+++ 
Sbjct: 9   PRRAFLQKIRDPETREVIDNGLCLWFPGPHSFTGEDSVEFHVHGGSAILTKLMQALSRL- 67

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
            +  A PGEF+RRAF N K+DL E E LADLI +ETE QR+ ++  + G L  LY  W  
Sbjct: 68  QVHPALPGEFTRRAFYNNKLDLTEVEGLADLIEAETECQRKQALLQVDGILRKLYNSWRK 127

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
            L+   + IEA +DF EE++++N   +   + +  L  ++  H++ G+ GEI+RNG + V
Sbjct: 128 VLSESVASIEAYIDFGEEDNIENDVIQNAHHALRQLMRELEEHLADGRRGEILRNGVRTV 187

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDD 282
           I+G  N GKSSL N L +++ AIVT I GTTRDV+ +  ++ GY V I+DTAGI E   D
Sbjct: 188 IIGEPNVGKSSLLNHLVQRNAAIVTPIAGTTRDVIELTANISGYPVLIADTAGITEDIGD 247

Query: 283 IVEKEGIKRTFLEVENADLILL---------------------LKEINSKKEISFPKNID 321
           IVE EGI+R     ENAD +++                     L  +  ++ ++      
Sbjct: 248 IVEAEGIRRARSHAENADFVVVMIDALKCATSGLTYKDYVREYLSSLGIQELLAKIGRER 307

Query: 322 FIFIGTKSDLYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           FI I  K DL     EE  H       L+S  T +G ++L+  +    SN         P
Sbjct: 308 FIVIANKKDLLK--EEEKRHLDNAEAVLVSCRTEDGFQDLLRSLTDHFSNICGDPSAECP 365

Query: 375 --SHKRHLYHLSQTVR----YLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
             S  RH  HL + +R    Y E  +  + D  + I AE +  A   LG+ITG
Sbjct: 366 TISQARHRNHLDRCLRHLQKYFEFCANEQHD--MAIAAEEIHKAMRELGRITG 416


>gi|311086919|gb|ADP66999.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 453

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 174/461 (37%), Positives = 252/461 (54%), Gaps = 38/461 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGLDGRILDK 63
           ETI A  T    SA+ I+R+SG   FQ      K   K P  R A+   F   +  ILDK
Sbjct: 5   ETIVAQVTCPGKSAVGILRISG---FQTKIVAIKILGKIPLARFATYSNFLDENNEILDK 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P S TGED  E   HG   +++ ++  +  + N+R+A PGEFS RAF NGK+
Sbjct: 62  GISLWFPAPHSLTGEDVLELQGHGSPLIMDLLIRRILSINNIRMAKPGEFSERAFLNGKM 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE- 182
           DL++AES+ DLI+SETE+  R S+  + G+ S    + ++ +   R  IE+++DFSEEE 
Sbjct: 122 DLIQAESIDDLINSETELSARASLNSLQGKFSFFIKELMNLIIEFRINIESNIDFSEEEI 181

Query: 183 -----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
                D+ N  S+E+ +  L LK  +         G ++R G KIVI G  N+GKSSL N
Sbjct: 182 NINMQDIINIKSRELHDKFLKLKATVLK-------GSLLREGKKIVIAGLPNSGKSSLLN 234

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L+  D AIVTDIPGTTRD+L  D+ + G   ++ DTAG+R+TDD VE+ GI R +  + 
Sbjct: 235 ILSYSDRAIVTDIPGTTRDLLYEDISINGVRCELIDTAGLRDTDDKVERIGIMRAWEMIR 294

Query: 298 NADLILLL--KEINSKKEIS----FPKNI-----DFIFIGTKSDLYSTY--TEEYDHL-- 342
            +D +L +  K ++  K+      F KNI        F+  K+DL       +E D    
Sbjct: 295 KSDHVLFVIDKTLSKSKQKKICDDFMKNILNNKTQVTFVLNKNDLIKDEFGIKEIDGTAF 354

Query: 343 --ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKD 399
             IS+ TGEG+  L   I  I  N   +  F   + +RH+  L      +L   +   + 
Sbjct: 355 ISISARTGEGVNILREHIIKIEKNINNESVF--IARRRHIKQLDLAYDEFLTAENTWRES 412

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++++AE+L + S  LG+I G    E LL+ IFS FCIGK
Sbjct: 413 ENIELLAESLSIISKFLGEIIGQCTSEDLLNHIFSSFCIGK 453


>gi|88608741|ref|YP_506593.1| tRNA modification GTPase TrmE [Neorickettsia sennetsu str.
           Miyayama]
 gi|123763699|sp|Q2GD53|MNME_NEOSM RecName: Full=tRNA modification GTPase mnmE
 gi|88600910|gb|ABD46378.1| tRNA modification GTPase TrmE [Neorickettsia sennetsu str.
           Miyayama]
          Length = 550

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 132/304 (43%), Positives = 196/304 (64%), Gaps = 5/304 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFI-CKKKKPFPRKASLRYFFGLDGRILDKGL 65
           TI+A+ST    S +++ R+SGP   +  E +    K+P PR       F  +  ++D+ L
Sbjct: 3   TIYALSTVFGKSGVAVFRISGPDALRALELLGLDIKQPRPRFVYFARLFD-EQLLIDEVL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F SP SFTGED  E H HG IAV+  I E+L+ +   + A PGEF+RRA  N ++DL
Sbjct: 62  VVYFASPASFTGEDVVELHSHGSIAVLRYISEKLSTL--FKPAEPGEFTRRAVLNNRMDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE + D+I+SET+ Q + +   +SG+L+  Y    DK+  + S++EA +DF +EE + 
Sbjct: 120 TKAEGIIDIINSETQEQLKQASRHLSGKLAEEYNSLRDKIIKVLSYLEAYIDFPDEE-IP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                E+   I+ ++ DIS +++ GK+GE IR G+ +VI+G  N GKS+LFN LAK+D+A
Sbjct: 179 ETVLAEIQQSIVAIQCDISRYLADGKVGEKIREGFSVVIVGKPNVGKSTLFNYLAKRDLA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDIPGTTRD+L + LD  GY V +SDTAGI+ET D +EK GI R   +   AD+I+ L
Sbjct: 239 IVTDIPGTTRDILEVRLDCHGYPVILSDTAGIQETCDAIEKMGITRALKKATEADVIVFL 298

Query: 306 KEIN 309
           ++I 
Sbjct: 299 RDIT 302



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 9/125 (7%)

Query: 320 IDFIFIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           I  + + TK D+  T    +       IS + GEG++ L++KI  I+S+    +   I +
Sbjct: 431 IPVVKVVTKGDIAPTQLSFWQDKGYICISVYKGEGMQLLLDKIFDIISSS--NIEAHIIT 488

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435
             RH   L   + +L   +    D  +++ AE ++LA+  +  +TG + ++ +LD IFS 
Sbjct: 489 RARHRLALENALEHLRRFN---TDLPIELAAEEIKLAANHIASVTGEIKLDDVLDEIFSS 545

Query: 436 FCIGK 440
           FCIGK
Sbjct: 546 FCIGK 550


>gi|289826410|ref|ZP_06545522.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 426

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 143/408 (35%), Positives = 229/408 (56%), Gaps = 21/408 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343
            +L + +  +   +             PKN+    +  K+D+       +E   H    +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAANHLE 404


>gi|72383392|ref|YP_292747.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. NATL2A]
 gi|123620473|sp|Q46HI4|MNME_PROMT RecName: Full=tRNA modification GTPase mnmE
 gi|72003242|gb|AAZ59044.1| tRNA modification GTPase trmE [Prochlorococcus marinus str. NATL2A]
          Length = 464

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 258/462 (55%), Gaps = 31/462 (6%)

Query: 5   KETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
           ++TI A++T   P   +I+ IR+SG S  +  + I          ++ +  +G       
Sbjct: 8   EDTIAAIATAVSPGQGSIAAIRISGSSAIETSKNIVDVPG-IQDWSTHKVLYGHVTEENR 66

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+ L++V   P SFTGED  E H HGGI  V  ILE +   P++R A PGEFS+RA
Sbjct: 67  KKYIDEVLILVMKGPRSFTGEDVVEIHCHGGIIPVQKILERILAFPSVRRAEPGEFSQRA 126

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
             NG++ L +AES+++L+S+ +     L++ G+ G + +       +L    + IEA +D
Sbjct: 127 VLNGRLSLTQAESISELVSARSRKAAELAINGIEGNIQTTIQSIRKRLIEQLTEIEARID 186

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F  EED+     K V N+I+ +K D++  I   K G  +R+G K+ + G  N GKSSL N
Sbjct: 187 F--EEDLPLLDEKHVKNEIVAIKKDLNELIDNAKRGSWVRSGLKVALTGKPNVGKSSLMN 244

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L+K++ AIVTD+PGTTRD+L  ++ LEG  V   DTAG+R+T DI+EK GI RT   + 
Sbjct: 245 RLSKQEKAIVTDLPGTTRDILESEIILEGIPVTFIDTAGLRDTKDIIEKIGISRTKKTLI 304

Query: 298 NADLILLLKE-----INSKKEI--SFPKNIDFIFIGTKSDLYSTYT----------EEYD 340
           +ADLI+L+ +      N  + I    P NI  + +G KSDL +  +          +E  
Sbjct: 305 HADLIILIFDYSSGWTNEDESILKQLPINIPLLIVGNKSDLTNDQSFEKVPKYILKKENL 364

Query: 341 HLISSFTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEK 398
            +IS+ TG G ++LIN  +K   S++   L  ++  ++R L     T++ LE +  + ++
Sbjct: 365 VIISAKTGNGEDDLINYLLKKCGSSQTHGLDIAL--NERQLDLAKSTMKSLENINKVFDE 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D    +LR A   LG++TG    E LLD IFSKFCIGK
Sbjct: 423 KLPWDFWTIDLRQAINYLGELTGEDLTESLLDNIFSKFCIGK 464


>gi|254360929|ref|ZP_04977075.1| possible tRNA modification GTP-binding protein TrmE [Mannheimia
           haemolytica PHL213]
 gi|261493844|ref|ZP_05990356.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261495110|ref|ZP_05991574.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|153092408|gb|EDN73471.1| possible tRNA modification GTP-binding protein TrmE [Mannheimia
           haemolytica PHL213]
 gi|261309180|gb|EEY10419.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310446|gb|EEY11637.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 452

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 156/457 (34%), Positives = 251/457 (54%), Gaps = 27/457 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           K+TI A +T      + I+R+SGP    V + +  K  P PR A+   F   DG +LD+G
Sbjct: 2   KDTIVAQATPIGRGGVGILRVSGPLAETVAQAVLGKTLP-PRIANYLPFKDEDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ + ++  LR+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILQVKGLRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+     +D + ++R+++EA +DF +EE +
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINALVDSVIYLRTYVEAAIDFPDEE-I 179

Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +  ++   LN+I+   + +     QG    I+R G K+VI G  NAGKSSL NALA 
Sbjct: 180 DFLADGKIEAKLNEIIAQLDGVRREAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAG 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVT+I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD 
Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWEEIAQADH 296

Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYS-----TYTEEYDHL-IS 344
           +LL+ +   ++   F           P N+    I  K DL          +++  + +S
Sbjct: 297 VLLMIDSTEQQADQFRQEWAEFLAKLPANMPVTVIRNKVDLSGEQEGLIQVDDFTMIRLS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + T  G++ L   +K  +  +         + +RHL  L     +LE   +   +    +
Sbjct: 357 AQTKVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFLAGE 415

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 416 LLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|332971197|gb|EGK10160.1| tRNA modification GTPase TrmE [Desmospora sp. 8437]
          Length = 458

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 163/459 (35%), Positives = 250/459 (54%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST    + I++IR+SGP   +V + I + KK      S    +G       G
Sbjct: 2   ETDTIAAISTPVGEAGIAVIRVSGPEAIRVADRIYRGKKSLRDAESHTVHYGTIVNSGQG 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+ V  SP +FT ED  E   HGG+  V  +LEE+      RLA PGEF++RAF
Sbjct: 62  NPIDEVLVTVMRSPRTFTREDVVEISCHGGMVPVQAVLEEVLS-AGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI S+T+   R++M+   G LS L  Q   ++    + +  ++D+
Sbjct: 121 LNGRIDLSQAEAVIDLIRSKTDRAARVAMQQAEGRLSGLIQQLRREILETLAHLAVNVDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D +  + + +L     ++  I+  +   + G+I R G   VI+G  N GKSSL NA
Sbjct: 181 PEY-DAEQLTEEIMLKKSRGIEERINHLLQTARQGKIYREGIGTVIVGRPNVGKSSLLNA 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA+++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+D+VE+ G++R+   +E 
Sbjct: 240 LARENKAIVTDIPGTTRDVIEEYVNVRGIPLRLVDTAGIRETEDVVERIGVERSHQALEG 299

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI-------- 343
           ADLILLL         + +K +   +N   I +  K DL      +E  +LI        
Sbjct: 300 ADLILLLLNHGESLSEDDRKLLKMVRNQTVIVVVNKMDLPRRLDLQEVRNLIGEAPLITT 359

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
           S    +G++ L   I  + L  K      +  S+ RH+  L Q  + +  A    E    
Sbjct: 360 SMIREQGIDPLEEAIVDLFLGGKAVAADATYVSNARHISLLKQAAQQVRDAIEGIEAGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD++  +L+ A  SLG+I G    E L+D IFS+FC+GK
Sbjct: 420 LDMVEIDLKNAWQSLGEIIGDAVAEDLIDQIFSQFCLGK 458


>gi|304320459|ref|YP_003854102.1| tRNA modification GTPase [Parvularcula bermudensis HTCC2503]
 gi|303299361|gb|ADM08960.1| tRNA modification GTPase [Parvularcula bermudensis HTCC2503]
          Length = 421

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 145/440 (32%), Positives = 241/440 (54%), Gaps = 39/440 (8%)

Query: 18  SAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFT 76
           + I++ RLSGP+  ++ + +   + +P  R+A+ RY    +G +LD GL++ FP P S T
Sbjct: 4   AGIAVWRLSGPASGEILDRLSGGRPRPQARRATHRYLVTPEGALLDDGLVLWFPGPASAT 63

Query: 77  GEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLIS 136
           GED  E H+HG +AV   +   L+ +   R A PGEF+ R F +GK+ LL  E LA L+ 
Sbjct: 64  GEDMVELHLHGSLAVARALPPILSNL-GARAAMPGEFTLRGFHHGKMSLLAVEGLAALLD 122

Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI 196
           SETE QRR +M  +SGE S+   +W   L   R+ +E+ +DF +EED+    ++EV   +
Sbjct: 123 SETEAQRRQAMRTLSGEGSAQVARWRAHLLRARAVLESAIDFPDEEDIPAQIAEEVRPAL 182

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + L  ++ + +++ K    +R G ++ I+G  NAGKS+L NAL K+D A+V+ +PGTTRD
Sbjct: 183 VALYGELQTALAEAKDARRLREGIEVAIIGPPNAGKSTLLNALLKEDRALVSSLPGTTRD 242

Query: 257 VLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +++  L++ G +V+I DTAGIRE T D +E+ G++R+      ADL++      +     
Sbjct: 243 IVSARLEIGGRVVEILDTAGIREATTDDIERAGVERSRDAAARADLVIACSPAGAP---- 298

Query: 316 FPKNID----FIFIGTKSDLYSTYTEE-----------YDHLISSFTGEGLEELINKIKS 360
            P  ID     + + TK+D     ++            +D  +++FT           ++
Sbjct: 299 -PPAIDTDAQILAVATKADEGRAASDPRLAISVHSGANWDRFLTAFT-----------EA 346

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
           +L+     L F+    +  +   +  V  +  A L +     +++AE +R    +L  +T
Sbjct: 347 VLALGGGGL-FAYERQRLLIGEAATAVERILAADLADP----ELLAEQVRAIGHTLDALT 401

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G +  E +L  IFS FCIGK
Sbjct: 402 GKIGTEDILGEIFSAFCIGK 421


>gi|187925952|ref|YP_001897594.1| tRNA modification GTPase TrmE [Burkholderia phytofirmans PsJN]
 gi|187717146|gb|ACD18370.1| tRNA modification GTPase TrmE [Burkholderia phytofirmans PsJN]
          Length = 464

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 245/465 (52%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G +  Q        +   PR AS   F  +
Sbjct: 2   LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTGQTLAPRHASYVPFLDV 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF
Sbjct: 62  SGNALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEDVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF EEE +    + +    +  ++  ++  +S+ + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPEEE-IDFLEAADARGKLTRIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R+T+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDL--YSTYTEEYDH--- 341
            E+E AD++L L +  +            FP+ +  + +  K+DL   +  T+  D    
Sbjct: 301 SEIERADVVLHLLDARTGMTAEDDAIAGRFPRGVPVVRVLNKTDLTGLAPATQALDADLE 360

Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--L 395
                +S+  G+G+  L +++  I   +       + + +RHL  L     +L  A+   
Sbjct: 361 LSEVRLSAKQGDGVALLRDELLRIAGWQAGAESVYL-ARERHLIALRAAEEHLATAAAHA 419

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464


>gi|90194072|gb|ABD92597.1| ThdF [Volucribacter psittacicida]
          Length = 436

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 153/435 (35%), Positives = 244/435 (56%), Gaps = 23/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             I I+R+SGP    V + +  K  P PR A    F   DG ILD+G+ + F +P SFTG
Sbjct: 6   GGIGILRVSGPQASNVAQAVLGKC-PKPRMADYLPFKDADGTILDQGIALYFKAPHSFTG 64

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  V++ +L+ + ++ ++RLA PGEFS +AF N K+DL +AE++ADLI +
Sbjct: 65  EDVLELQGHGGQVVLDLLLKRILQLDHIRLARPGEFSEQAFLNDKLDLAQAEAIADLIDA 124

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R +++ + GE S    Q +D+L ++R+++EA +DF +EE +   +  ++   + 
Sbjct: 125 NSEQAARSALKSLQGEFSHKINQLVDQLIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLQ 183

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +   ++    + K G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD+
Sbjct: 184 QIIQQLNQVQQEAKQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDI 243

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL-----------LK 306
           L   + ++G  + I DTAG+R+  D VEK GI R + E++ AD+ILL           ++
Sbjct: 244 LREHIHIDGMPLHIIDTAGLRDATDEVEKIGIHRAWNEIKQADMILLMLDSTAPDNQNME 303

Query: 307 EINSKKEISFPKNIDFIFIGTKSDLYSTY---TEEYDHLI---SSFTGEGLEELINKIKS 360
           ++ S+     P +I    I  K DL        ++ D+ +   S+ T  G++ L   +K 
Sbjct: 304 KVRSEFLQKLPPHIPVTIIRNKVDLTGETEGIQQQQDYTVIQLSAKTQYGVDLLREHLKQ 363

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGK 418
            +  +         + +RHL  L++  ++L      L +   G +++AE LRLA + L +
Sbjct: 364 AMGYQ-SGTEGGFLARRRHLEALNKAAQHLAQGHIQLTQYFAG-ELLAEELRLAQLQLSE 421

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 422 ITGQFTSDDLLTHIF 436


>gi|89052690|ref|YP_508141.1| tRNA modification GTPase TrmE [Jannaschia sp. CCS1]
 gi|122499793|sp|Q28VZ6|MNME_JANSC RecName: Full=tRNA modification GTPase mnmE
 gi|88862239|gb|ABD53116.1| tRNA modification GTPase trmE [Jannaschia sp. CCS1]
          Length = 426

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 155/435 (35%), Positives = 241/435 (55%), Gaps = 10/435 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA +T    + ++IIR+SGP  F+V   +     P   + +LR      G +LD+GL
Sbjct: 2   QTIFAQATARGKAGVAIIRISGPDAFEVGRCLLGSL-PDAGRFALRDVRTPLGELLDRGL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++VF +P SFTGED+ E  +HG +AVV  +   +      RLA+ GEF++RA  N  +DL
Sbjct: 61  VLVFKAPASFTGEDTVELQLHGSVAVVRAVEGAIRSTGLARLADAGEFTQRALLNDMLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E L  LI SETE QR+++     G LS    +W   +    + +EA +DF +E+ V 
Sbjct: 121 TQVEGLGRLIDSETEAQRKVAQASFEGGLSDKAERWRHLMIRAAALLEASIDFVDED-VP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                EV + ++ L  D++  ++   + E + +G+++ ILG  NAGKS+L N LA +++A
Sbjct: 180 VDVVPEVQSILMGLDTDLAKEVTGAVVAERLHDGFEVAILGAPNAGKSTLLNVLADREIA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +D+PGTTRDV+   LD+ G  V   DTAGIR+T D++EK G++R       AD+ +LL
Sbjct: 240 ITSDVPGTTRDVIEARLDVSGLPVTFLDTAGIRDTVDVIEKIGVQRAIDRALAADVRILL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           +  +          IDF +   K+DL           IS  TG G++ L+  I+ +LS K
Sbjct: 300 EIDDWILPDVLSDTIDFRY-RAKADLSDGEG------ISGRTGVGIDRLLTDIEGVLSEK 352

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425
              +  ++   +R     ++ V      ++      L++ AE++R A  SL  + G VDV
Sbjct: 353 MSAVRSAVTDRQRGGIEAAR-VSLDAGVTVLSGTAELELAAEHIRHAQRSLDSVIGRVDV 411

Query: 426 EQLLDIIFSKFCIGK 440
           E LL  IFS+FCIGK
Sbjct: 412 ENLLGEIFSRFCIGK 426


>gi|253681274|ref|ZP_04862072.1| tRNA modification GTPase TrmE [Clostridium botulinum D str. 1873]
 gi|253562512|gb|EES91963.1| tRNA modification GTPase TrmE [Clostridium botulinum D str. 1873]
          Length = 459

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 170/462 (36%), Positives = 262/462 (56%), Gaps = 28/462 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP--RKASLRYFFGLD- 57
            E +TI A++T    S +SIIR+SG     +    F+ K  +        S+RY F +D 
Sbjct: 2   KEFDTIAAIATNLGESGVSIIRVSGEKALSIVSKIFVGKNDRKLDDITTYSMRYGFIIDK 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G  LD+ ++     P SFT ED  E + HGG+ V   ILEE+ K    RLA+PGEF++
Sbjct: 62  VSGEKLDEVIVSYMKGPRSFTAEDVVEINCHGGVIVTKRILEEVIK-SGARLASPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI+++TE+  + ++E   G+LS       DKL  I + IEA 
Sbjct: 121 RAFLNGRIDLSQAEAVIDLINAKTELSAKSALEQSEGKLSKEISHLRDKLLEIIAHIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E+ D++  +S++   D+  +  +I   +S    G+I+R G   VI+G  N GKSS+
Sbjct: 181 VDYPED-DLEEVTSEKGKEDVDKIITEIDKLLSSANEGKILREGLNTVIVGKPNVGKSSI 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  +  AIVTDIPGTTRDV+   + +EG  +KI DTAGIRETDDIVEK G++++  +
Sbjct: 240 LNALLMETRAIVTDIPGTTRDVIEEYMSIEGIPIKIVDTAGIRETDDIVEKIGVEKSREK 299

Query: 296 VENADLILLL----KEINS--KKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDH 341
           + N+DL +L+    +E+++  K+ I F K+  +I +  K DL         +    +Y  
Sbjct: 300 ILNSDLTVLVLDSSRELDAEDKEIIDFIKDKKYIVLLNKIDLDTKLDKGSLNKLNSDYII 359

Query: 342 LISSFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            IS+ TG+GL+     IK +  +     K +  +   HK  L     ++   + A   E 
Sbjct: 360 DISAKTGKGLDRFKEVIKELFFSGEVTSKDVMITNTRHKEALIRAKNSLIAGKEAL--EN 417

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D+ + ++R A  +LG+I G    E ++D IFSKFC+GK
Sbjct: 418 TFAIDLASIDIRDAWKNLGEINGDTVEEDMIDKIFSKFCLGK 459


>gi|152998479|ref|YP_001343314.1| tRNA modification GTPase TrmE [Marinomonas sp. MWYL1]
 gi|205415779|sp|A6W3V0|MNME_MARMS RecName: Full=tRNA modification GTPase mnmE
 gi|150839403|gb|ABR73379.1| tRNA modification GTPase TrmE [Marinomonas sp. MWYL1]
          Length = 459

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 163/458 (35%), Positives = 254/458 (55%), Gaps = 28/458 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           +++TI A +T      + IIRLSGP    + + I   + P PR A    F       LD+
Sbjct: 9   DQDTIAAQATAPGRGGVGIIRLSGPKSLAIAKQIIGFE-PKPRYAHYVPFKTTGQEQLDE 67

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ +L     +   RLA PGEFS RAF N K+
Sbjct: 68  GIALYFPGPNSFTGEDVFELQGHGGPVIMDMLLSHCVAL-GARLARPGEFSERAFMNDKM 126

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI S +E   + ++  + G  S    + ++ L H+R ++EA +DF EEE 
Sbjct: 127 DLTQAEAIADLIDSTSEQAAKCALRSLQGAFSKRVDELVEALIHLRIYVEAAIDFPEEE- 185

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +      +V  ++  ++  ++  + +   G +IR G  +VI G  NAGKSSL NAL+ K+
Sbjct: 186 IDFIGDGKVAAELAGIQAKLAEVLKEANQGALIREGMNVVIAGRPNAGKSSLLNALSGKE 245

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R++ D VE+ GI+R + E+  AD IL
Sbjct: 246 SAIVTNIEGTTRDVLREHIHLDGMPLHIIDTAGLRDSPDEVERIGIQRAWDEISKADRIL 305

Query: 304 LL---KEINSK--KEISFPKNID-------FIFIGTKSDLY--STYTEEYDHL----ISS 345
           ++   + I+SK   EI +P+ ++          +  K DL    T  E    +    +S+
Sbjct: 306 MMVDSQSIDSKDPNEI-WPEFMEKLGDTKHLTLVRNKVDLTKEGTGIETVSGVPVVSLSA 364

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--- 402
            TGEG+ +L   +K+++          I + +RH+  L++  R+L+    NE+  G    
Sbjct: 365 KTGEGVTDLTEHLKAVMGFDSTTEGGFI-ARRRHIEALNKANRFLDAG--NEQLHGYGAG 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE+L+ A  +L +ITG    + LL  IF  FCIGK
Sbjct: 422 ELLAEDLKEAQQALSEITGAFTSDDLLGRIFGSFCIGK 459


>gi|73543138|ref|YP_297658.1| tRNA modification GTPase TrmE [Ralstonia eutropha JMP134]
 gi|123623715|sp|Q46VM0|MNME_RALEJ RecName: Full=tRNA modification GTPase mnmE
 gi|72120551|gb|AAZ62814.1| tRNA modification GTPase trmE [Ralstonia eutropha JMP134]
          Length = 475

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 163/478 (34%), Positives = 249/478 (52%), Gaps = 41/478 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M      I A++T      I ++R+SGP    V   IC +    PR A+   F    G++
Sbjct: 1   MTAPLPPIAAIATAPGRGGIGVVRVSGPDVRPVMHAICGQALK-PRHATYLPFLDGHGKV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRA 117
           +D GL + FP P S+TGE+  E   HGG  V+  +L    +  +   LRLA PGEF+RRA
Sbjct: 60  IDHGLALYFPGPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGHGIGLRLAEPGEFTRRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K+DL +AE++ADLI + TE   R +   M GE S      ++K+ H+R  +EA LD
Sbjct: 120 FLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSHAIHTLVEKVIHLRMLVEATLD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EEE +    + +    +  ++ND+ + ++Q + G ++R G  +V+ G  N GKSSL N
Sbjct: 180 FPEEE-IDFLEASDARGQLATIRNDLGNVLAQARQGALLREGLSVVLAGQPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEV 296
           ALA  ++AIVT I GTTRD +   + +EG  + I DTAG+R E  D VE+ GI+RT+  +
Sbjct: 239 ALAGAELAIVTPIAGTTRDRVKETIQIEGIPLHIIDTAGLRDEATDEVERIGIERTWDAI 298

Query: 297 ENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYST-----YT 336
             AD++L L +               I+ +     P     + +  K D+  T     ++
Sbjct: 299 RRADIVLHLVDATDYLRHGLSEIDDAIDDRLSGQLPPGAPIVRVVNKIDVAPTVGGMMFS 358

Query: 337 EEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
               H+            IS+ TG G+E L  ++  ++  +      +  + +RHL  L 
Sbjct: 359 GNRPHVVAANGPNPTEIWISARTGSGIELLRKELLRLVGWQSGN-EGTFLARERHLTALR 417

Query: 385 QTVRYLEMAS-LNEKDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           Q   +L++A+  +E+    LD+ AE LRLA   L  ITG    + LL  IF++FCIGK
Sbjct: 418 QAQSHLDVAAEQSERQAQALDLFAEELRLAQEHLNSITGEFTSDDLLGTIFTRFCIGK 475


>gi|209519685|ref|ZP_03268474.1| tRNA modification GTPase TrmE [Burkholderia sp. H160]
 gi|209499902|gb|EDZ99968.1| tRNA modification GTPase TrmE [Burkholderia sp. H160]
          Length = 464

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 246/465 (52%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G +  Q        +   PR AS   F   
Sbjct: 2   LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTAQTLAPRHASYVPFLDA 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF
Sbjct: 62  SGNPLDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++++  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEEVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF EEE +    + +    +  ++  ++  +S+ + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPEEE-IDFLEAADARGKLTRIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+RET+D VEK GI+RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRETEDEVEKIGIERTW 300

Query: 294 LEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDL--YSTYTEEYDH--- 341
            E+E AD++L L +  +            FP+ +  + +  K+DL   +  T+  D    
Sbjct: 301 GEIERADVVLHLLDARAGMTADDETIAGRFPRGVPVVRVLNKTDLTGLAPATQALDADLE 360

Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
                +S+  G+G+  L +++  I   +       + + +RHL  L     +L  A+ + 
Sbjct: 361 LSEVRLSAKKGDGVALLRDELLRIAGWQAGAESVYL-ARERHLIALRAADEHLATAAAHA 419

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 EQNAQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464


>gi|118594209|ref|ZP_01551556.1| tRNA modification GTPase [Methylophilales bacterium HTCC2181]
 gi|118439987|gb|EAV46614.1| tRNA modification GTPase [Methylophilales bacterium HTCC2181]
          Length = 450

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 162/459 (35%), Positives = 254/459 (55%), Gaps = 28/459 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M     TI A+ST      I I+RLSGP    + + IC  +   PR+A    F+  D  I
Sbjct: 1   MLRAANTIAAISTAGGVGGIGIVRLSGPEALAIAKTICSGQ-IVPREAGFHNFYNADQEI 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+++ FP+P+SFTGED  EF  HGG  V+N +L  L      RLA PGEF+RRA+ N
Sbjct: 60  VDQGVILFFPNPKSFTGEDVIEFQGHGGQTVLNAVLN-LCIDKGARLAEPGEFTRRAYLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ D+I++ T    + + + +SG+ S      + KL  +R F+EA LDF E
Sbjct: 119 NKMDLAQAESVIDVINATTIEAVKSAAQSLSGKFSIKINGLLKKLIELRVFVEACLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSSLF 236
           EE +       V++ +    N+I++ + Q     + G++++ G  +V++G  N GKSSL 
Sbjct: 179 EE-IDFIEQGNVIDRL----NNIAAEVDQILLVARHGQLLKEGANVVLIGQPNVGKSSLL 233

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  ++ AIVTD+PGTTRD +  ++ + G  + + DTAG+R TDD VE  GI +T+  +
Sbjct: 234 NQLVGEEKAIVTDVPGTTRDPIASNISIHGIPLNVFDTAGLRTTDDQVELLGISKTWESI 293

Query: 297 ENADLILLLKEI-----NSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDH------LI 343
           + + + ++L +      N +K+I    PKNI+ ++I  K DL     +  +H       I
Sbjct: 294 KGSHIAMVLVDATKGAGNYEKDIISRLPKNIEILWIYNKIDLTDDKPKAVEHNQNKSIYI 353

Query: 344 SSFTGEGLEELINKIKSILS--NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           S+    G++ L   +  IL+  + +        +  RH+  L+  V+   +  L  KD  
Sbjct: 354 SAKLDLGIDLLREALYEILTGGSAYNNNETVYIARSRHIDALN-AVKASIIMGLAHKDSS 412

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE L LA  +L  ITG    + LL  IFS+FCIGK
Sbjct: 413 -ELLAEELMLAQNALSSITGEFSSDDLLGKIFSEFCIGK 450


>gi|90194074|gb|ABD92598.1| ThdF [Avibacterium gallinarum]
          Length = 435

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 155/433 (35%), Positives = 250/433 (57%), Gaps = 24/433 (5%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SGP   QV E +  K    PR A+   F  +DG +LD+G+ + F +P SFTGED
Sbjct: 8   VGILRVSGPLAQQVAEAVLGKNLK-PRVANYLPFKDIDGTVLDQGIALFFKAPNSFTGED 66

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ + ++  +RLA PGEFS +AF N K+DL +AE++ADLI + +
Sbjct: 67  VLELQGHGGQIILDLLLKRILQVKGVRLARPGEFSEQAFLNDKLDLAQAEAIADLIDATS 126

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   +  +
Sbjct: 127 EQAARSALKSLQGEFSNKINQLVDDVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLREI 185

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
              +++  ++ K G I+R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL 
Sbjct: 186 IAQLAAVRAEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR 245

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD-LILLLKEINSKKEIS--- 315
             + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +IL+L   +S++ ++   
Sbjct: 246 EHIHIDGMPLHIIDTAGLRDATDEVERIGIRRAWDEIEQADRIILMLDSTDSEENLAQVR 305

Query: 316 ------FPKNIDFIFIGTKSDL---YSTYTEEYDHL---ISSFTGEGLEELINKIKSILS 363
                  P NI    +  K+DL     T +E+       +S+ T  G++ L   +K  + 
Sbjct: 306 SEFLAKLPNNIPLTIVRNKADLSGEAETISEQNGQTSISLSAKTQVGVDLLREHLKQAMG 365

Query: 364 -NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKIT 420
            N   +  F   + +RHL  L Q   +L+  +  L E   G +++AE LR+    L +IT
Sbjct: 366 YNTSAEGGFL--ARRRHLEALEQADIHLQAGLIQLTEFYAG-ELLAEELRMVQNHLSEIT 422

Query: 421 GCVDVEQLLDIIF 433
           G    + LL  IF
Sbjct: 423 GQFTSDDLLGNIF 435


>gi|149185268|ref|ZP_01863585.1| tRNA modification GTPase [Erythrobacter sp. SD-21]
 gi|148831379|gb|EDL49813.1| tRNA modification GTPase [Erythrobacter sp. SD-21]
          Length = 424

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 163/437 (37%), Positives = 247/437 (56%), Gaps = 17/437 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+GA P+AI ++R+SGP      E +     P  R+AS+R   G DGR+LD+ L
Sbjct: 3   DTIFALSSGAPPAAIGVVRISGPLAGDTVEAMTGAL-PGERRASVRAVKGADGRVLDRAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P++ TGED AEFH HGG AV+  I  +LA    LR A PGEF+RRAF NG IDL
Sbjct: 62  VLWFPGPKTATGEDLAEFHCHGGRAVIAAIEADLAARDGLRRAEPGEFTRRAFANGVIDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE L DL+S+ETE+QRR +     G LS     W  ++  + + +E+ LDF +E+DV 
Sbjct: 122 AEAEGLGDLLSAETELQRRAAEAAAGGGLSQKVEGWRSRVLGLSALVESQLDFGDEDDVG 181

Query: 186 NFSSKEVLN-DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                E+ + ++  L  +    +   ++ E +++G ++V+ G  N GKSSLFNAL  +  
Sbjct: 182 EL--PEMFHVELSGLLGEWRRALDAPQI-ERLKDGIRVVLAGPPNTGKSSLFNALLDEGA 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIV+   GTTRDV+   + L      + DTAG+R ++   +E+ GI R   ++E AD++L
Sbjct: 239 AIVSAEAGTTRDVIERPIALGSVPFVLVDTAGLRDDSAGEIERIGIDRARDQLERADIVL 298

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
            L +     E   P     + IG + DL  +     D+ +S  TG G+E+L+  +     
Sbjct: 299 WLGD-----EGRGPDGC--LEIGARVDLGDSRKTSPDYEVSVVTGSGIEDLVRGLIENSR 351

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
           N   + P  +  + R    L+     L+   ++E D  L +  E LRLA ++L ++ G  
Sbjct: 352 NLLPR-PGEVALNFRQTSALNDAHEALQ--GIDEGDDVL-LTGERLRLARLALDRLLGRH 407

Query: 424 DVEQLLDIIFSKFCIGK 440
             E +LD +F +FCIGK
Sbjct: 408 STEDMLDALFGRFCIGK 424


>gi|66826549|ref|XP_646629.1| GTP-binding protein 3 [Dictyostelium discoideum AX4]
 gi|74897384|sp|Q55C52|GTPB3_DICDI RecName: Full=tRNA modification GTPase gtpbp3, mitochondrial;
           AltName: Full=GTP-binding protein 3; Flags: Precursor
 gi|60474527|gb|EAL72464.1| GTP-binding protein 3 [Dictyostelium discoideum AX4]
          Length = 512

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 171/495 (34%), Positives = 264/495 (53%), Gaps = 66/495 (13%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK------KKPFPRKASLRYFFGLD- 57
           K+TI+ +S+G   S ++IIR+SGP    V   + KK      ++   R A+L  F+    
Sbjct: 25  KDTIYNLSSGVGKSGVAIIRVSGPQAETVIRKLIKKSDVDKNEEIKSRYATLSTFYNPKT 84

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              LDKG+ I FPSP SFTGED  EFH+HGG AV+   +E +  +   R +  GEF++RA
Sbjct: 85  NEQLDKGMFIWFPSPNSFTGEDVVEFHIHGGRAVIYETMEAIGLIEGTRPSEQGEFTKRA 144

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           FENGK+DL + E L+DL+ + T  Q++++++ M G +S  Y      L    +++EA +D
Sbjct: 145 FENGKMDLTQVEGLSDLLDASTSFQKKIALKQMQGSISEFYLSLRKDLIRASAYMEAFID 204

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F ++ ++      +  N I+ +++ I  H++ GK GE +R+G  I I+G  NAGKSSL N
Sbjct: 205 FGDDAELDPEIVDQSRNRIISIRDKIQQHLNDGKRGERLRDGANIAIVGPPNAGKSSLIN 264

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEV 296
            L  +  +IV+ I GTTRD++ + LD++GY V I DTAG+R  T+D +E EGI+      
Sbjct: 265 LLTNRKASIVSPIAGTTRDIVEVILDIDGYPVIIGDTAGLRNSTNDQIEIEGIEMAKDRF 324

Query: 297 ENADLIL-------LLKEINSKKEISFPKNID-------------FIFIGTKSDLYSTYT 336
            N+D+ L       L  ++N  + ++   N +              I I  KSDL   + 
Sbjct: 325 NNSDIKLFLFDSFNLFSQLNQNQNLNSSFNFNEEIKNLFNFIDNETIIIFNKSDLLKQFD 384

Query: 337 --EEYDHL---------------------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
             +E+++L                     IS    E +++L+N +K  L N F+      
Sbjct: 385 NLKEWENLKLNLLDNIKKSNNLNSIQSIEISCNNNENIKDLLNLLKLNLKNLFEIQDKES 444

Query: 374 P--SHKRHLYHLSQTV----RYLEMASLNEKDCGLDII--AENLRLASVSLGKITGCVDV 425
           P  +  R+  HLS  V    RYL         C  D++  +E LR A +S+ +IT  V++
Sbjct: 445 PLLTRLRYKQHLSDCVESLDRYLYY-------CEHDVVLASEELRSAILSISEITHSVNI 497

Query: 426 EQLLDIIFSKFCIGK 440
           + LLDIIF  FCIGK
Sbjct: 498 DDLLDIIFKDFCIGK 512


>gi|124024977|ref|YP_001014093.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. NATL1A]
 gi|166234805|sp|A2C018|MNME_PROM1 RecName: Full=tRNA modification GTPase mnmE
 gi|123960045|gb|ABM74828.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus str. NATL1A]
          Length = 464

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 257/462 (55%), Gaps = 31/462 (6%)

Query: 5   KETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
           ++TI A++T   P   +I+ IR+SG S  +  + I          ++ +  +G       
Sbjct: 8   EDTIAAIATAVSPGQGSIAAIRISGSSAIETSKNIVDVPG-IQDWSTHKVLYGHVTEENR 66

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+ L++V   P SFTGED  E H HGGI  V  ILE +   P++R A PGEFS+RA
Sbjct: 67  KKYIDEVLILVMKGPRSFTGEDVVEIHCHGGIIPVQKILERILAFPSVRRAEPGEFSQRA 126

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
             NG++ L +AES+++L+S+ +     L++ G+ G + +       +L    + IEA +D
Sbjct: 127 VLNGRLSLTQAESISELVSARSRKAAELAINGIEGNIQTTIQSIRKRLIEQLTEIEARID 186

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F  EED+     K V N+I+ +K D++  I   K G  +R+G K+ + G  N GKSSL N
Sbjct: 187 F--EEDLPLLDEKHVKNEIVAIKKDLNELIDNAKRGSWVRSGLKVALAGKPNVGKSSLMN 244

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L+K++ AIVTD+PGTTRD+L  ++ LEG  V   DTAG+R+T DI+EK GI RT   + 
Sbjct: 245 RLSKQEKAIVTDLPGTTRDILESEIVLEGIPVTFIDTAGLRDTKDIIEKIGISRTKKTLI 304

Query: 298 NADLILLLKE-----INSKKEI--SFPKNIDFIFIGTKSDLYS--------TYTEEYDHL 342
           +ADLI+L+ +      N  + I    P NI  + +G KSDL +         Y  + ++L
Sbjct: 305 HADLIILIFDYSSGWTNEDESILKQLPVNIPLLIVGNKSDLMNDQSFEKVPKYILKKENL 364

Query: 343 I--SSFTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEK 398
           +  S+ TG G ++LIN  +K   S++   L  ++  ++R L     T   LE +  + ++
Sbjct: 365 VILSAKTGNGEDDLINYLLKKCGSSQTHGLDIAL--NERQLDLAKSTTESLENINKVFDE 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D    +LR A   LG++TG    E LLD IFSKFCIGK
Sbjct: 423 KLPWDFWTIDLRQAINYLGELTGEDLTENLLDNIFSKFCIGK 464


>gi|161526321|ref|YP_001581333.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616]
 gi|189348964|ref|YP_001944592.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616]
 gi|160343750|gb|ABX16836.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616]
 gi|189332986|dbj|BAG42056.1| tRNA modification GTPase [Burkholderia multivorans ATCC 17616]
          Length = 464

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 158/466 (33%), Positives = 250/466 (53%), Gaps = 35/466 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T A    I ++R+S       +   + + +C ++   PR AS   F    G
Sbjct: 5   DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPMIDALCGQRLA-PRHASYVPFLDAQG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   ++ +   LRLA PGEF+R
Sbjct: 64  APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDVGRAVGLRLAEPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      +D + ++R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVINLRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302

Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDL------YSTYTEEYD 340
           +E AD++L L  ++S+  ++         FP  +  + +  K+DL       +    E D
Sbjct: 303 IERADVVLHL--LDSRTGMTADDDAIAARFPAGVPVVRVLNKTDLTGVPASVAHPAAEGD 360

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
               HL S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+  
Sbjct: 361 LTEVHL-SAKRGDGIDLLRAELLRIAGWQAGAEGVYL-ARERHLMALRAAQDHLARAAEH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|90194140|gb|ABD92631.1| ThdF [Pasteurella canis]
          Length = 436

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 244/443 (55%), Gaps = 41/443 (9%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            I I+R+SGP   +V   +  K  P PR A    F  LDG ILD+G+ + F +P SFTGE
Sbjct: 7   GIGILRVSGPKSVEVANAVLGKC-PKPRVADYLPFKDLDGTILDQGIALYFKAPHSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQVVLDLLLKRILQIEGVRLARPGEFSEQAFLNDKLDLAQAEAIADLIDAS 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LN+
Sbjct: 126 SEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAHLNE 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+   + +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTR
Sbjct: 185 IILQLDKVR---SEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKK 312
           DVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD ILL+    E N++ 
Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDSTEPNNQD 301

Query: 313 ----EISF----PKNIDFIFIGTKSDL------------YSTYTEEYDHLISSFTGEGLE 352
                + F    P  I    I  K+DL            Y+  T      +S+ T +G++
Sbjct: 302 LETIRVEFLAKLPATIPITMIRNKADLSGEIEGLKEQSGYTVIT------LSAKTQQGVD 355

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLR 410
            L   +K  +  +         + +RHL  L +   +L      L +   G +++AE LR
Sbjct: 356 LLREHLKQSMGYQ-TNTEGGFLARRRHLEALEKAAHHLRQGHIQLTQFYAG-ELLAEELR 413

Query: 411 LASVSLGKITGCVDVEQLLDIIF 433
           +    L +ITG    + LL  IF
Sbjct: 414 MVQNHLSEITGQFTSDDLLGNIF 436


>gi|262277801|ref|ZP_06055594.1| tRNA modification GTPase TrmE [alpha proteobacterium HIMB114]
 gi|262224904|gb|EEY75363.1| tRNA modification GTPase TrmE [alpha proteobacterium HIMB114]
          Length = 445

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 162/451 (35%), Positives = 250/451 (55%), Gaps = 28/451 (6%)

Query: 9   FAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIV 68
           +A+ST    S I+IIR+SG S  Q+   I +     PR A L+ F+  +G ++D+G+LI 
Sbjct: 4   YALSTPPGVSGIAIIRISGDSALQIANQITRTVIDHPRSALLKSFYDQEGELIDEGILIW 63

Query: 69  FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEA 128
           +P  +S+TGE   E H+HG  AV+N +LE+L    + RLA PGEF++ A++N +I+L EA
Sbjct: 64  YPEGQSYTGEHLIEIHIHGSKAVINKLLEDLGDRKDCRLAEPGEFTKTAYQNNRINLYEA 123

Query: 129 ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF- 187
           ES+ADL+ +ETE QR  ++   +   S  + +W + +  + S  EA +DFSEE+  +   
Sbjct: 124 ESIADLLQAETEAQRIQALRLKNS--SPKFLEWRETILDVLSKTEASIDFSEEDLPEGIL 181

Query: 188 -SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            +++E +  I+   +DI   + +  +GEIIR+G+KI I+G  NAGKSS  N L K+  AI
Sbjct: 182 KNNEEKIKSIV---SDIDEMLDE-TMGEIIRDGFKIAIIGPPNAGKSSFLNLLVKRQAAI 237

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           V+ I GTTRD++ +   +  Y V ++DTAGIR   + +EK G++        A+L +L+ 
Sbjct: 238 VSSIKGTTRDIIEVKYHINNYPVILTDTAGIRNAKNKIEKTGVELALNASNEANLDILIL 297

Query: 307 EINSKKEISFPKNI------DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL------ 354
           +   KK    PKNI        + I  K D  S   ++   ++  +  + L E+      
Sbjct: 298 DGTEKK---IPKNILKLITHKTLIILNKKDKKSFNAKKIIKVLKGYKFQDLIEVSIKNKT 354

Query: 355 -INK----IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            INK    +K I+S        ++ S  RH   L +    L       K   ++  AE L
Sbjct: 355 GINKLNLRLKKIVSEIDTAQSTTLISRVRHRALLKKCSNRLHDFLKISKSDEVEKAAEEL 414

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           RLAS +LG I G + VE++L  IF  FCIGK
Sbjct: 415 RLASNNLGHIVGFIGVEEILGKIFQDFCIGK 445


>gi|157694475|ref|YP_001488937.1| tRNA modification GTPase TrmE [Bacillus pumilus SAFR-032]
 gi|205829058|sp|A8FJG0|MNME_BACP2 RecName: Full=tRNA modification GTPase mnmE
 gi|157683233|gb|ABV64377.1| tRNA modification GTP-binding protein TrmE [Bacillus pumilus
           SAFR-032]
          Length = 459

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 164/461 (35%), Positives = 260/461 (56%), Gaps = 29/461 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG--LDGR-- 59
           +TI A+ST     AI+IIRLSGP   Q+ + + K  K+K      S    +G  +D R  
Sbjct: 2   DTIAAISTPMGEGAIAIIRLSGPEAVQIADRMYKGPKEKKLVSVDSHTIHYGHIVDARTD 61

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++++ ++ V  +P++FT ED  E + HGGI  VN +L+ LA     RLA PGEF++RAF
Sbjct: 62  QVIEEVMVSVLRAPKTFTREDVIEINCHGGIVTVNKVLQ-LALREGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L  +   ++    + IE ++D+
Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAITQMEGRLSGLVQRLRGEILETLAHIEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     +K +I S +S    G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEYDDVEEMTHRVLVEKATSVKKEIESLLSTSHQGKILREGLSTVIIGRPNVGKSSLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 241 LVQETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300

Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------- 342
           ADLILL+  +N  +E+S            +D I I  K+DL      E+   L       
Sbjct: 301 ADLILLV--LNYSEELSEEDIKLFEAVSGMDIIVIVNKTDLEPKLDVEKVKQLAKDRPVV 358

Query: 343 -ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
             S    +G++EL   I+S+  +   +    +  S+ RH+  L    + +E A    E D
Sbjct: 359 TTSLLQEKGIDELEMAIQSLFFTGSIESGDLTYVSNTRHIALLQAAKQSIEDALEGIEMD 418

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DI+  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 419 VPIDIVQIDLTRCWEQLGEIIGDAVHESLIDQLFSQFCLGK 459


>gi|254797067|ref|YP_003081905.1| tRNA modification GTPase TrmE [Neorickettsia risticii str.
           Illinois]
 gi|254590313|gb|ACT69675.1| tRNA modification GTPase TrmE [Neorickettsia risticii str.
           Illinois]
          Length = 550

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/314 (42%), Positives = 201/314 (64%), Gaps = 11/314 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFI-CKKKKPFPRKASLRYFFGLDGRILDKGL 65
           TI+A+ST    S +++ R+SGP   Q  + +    K+P PR A     F  +  ++D+ L
Sbjct: 3   TIYALSTVFGKSGVAVFRISGPDALQALKVLGLDIKRPRPRFAYFTRLFD-EQLLIDEVL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F SP SFTGED  E H HG IAV+  I E+L+ +   + A PGEF+RRA  N ++DL
Sbjct: 62  VIYFASPASFTGEDVVEVHSHGSIAVLRYISEKLSTL--FKPAEPGEFTRRAVLNNRMDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE + D+I++ET  Q + +   +SG+L+  Y     K+  + S++EA +DF +EE + 
Sbjct: 120 TKAEGIIDIINAETREQLKQASRHLSGKLAEGYHSLRSKIIKVLSYLEAYIDFPDEE-IP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                E+   IL ++ DIS +++ GK+GE IR G+ +VI+G  NAGKS+LFN LAK+D+A
Sbjct: 179 ETVLVEIQQSILAIQRDISHYLADGKVGEKIREGFSVVIVGKPNAGKSTLFNYLAKRDLA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDIPGTTRD+L + LD  GY + +SDTAGI+ET D +EK GI R   +   AD+I+ L
Sbjct: 239 IVTDIPGTTRDILEVRLDCHGYPLILSDTAGIQETCDAIEKMGIARALKKATEADVIVFL 298

Query: 306 KEI------NSKKE 313
           ++I      N+++E
Sbjct: 299 RDITELHVTNARRE 312



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 70/125 (56%), Gaps = 9/125 (7%)

Query: 320 IDFIFIGTKSDLYST---YTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           I  + + TK+D+  T   + ++  ++ +S + GEG++ L++KI  I+S+    +   I +
Sbjct: 431 IPVVKVVTKADIAPTQLSFWQDKGYICVSVYEGEGMQLLLDKIFDIISSS--NIEAHIIT 488

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435
             RH   L   + +L     N  D  +++ AE ++LA+  +  +TG + ++ +LD IFS 
Sbjct: 489 RARHRLALENALEHL--GRFN-TDLPIELAAEEIKLAANHVASVTGEIKLDDILDEIFSS 545

Query: 436 FCIGK 440
           FCIGK
Sbjct: 546 FCIGK 550


>gi|169635752|emb|CAQ16330.1| t-RNA modification GTPase protein [Brevibacterium linens]
          Length = 457

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 161/463 (34%), Positives = 248/463 (53%), Gaps = 29/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   ETI AV+T      + I+R+SGP    +      +++  PR A    F+G +  +
Sbjct: 1   MSVAAETIAAVATARGRGGVGIVRISGP-LASIAAKAFSERELKPRYAHYGPFYGENREV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCIQL-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLGMLDKVRQELSTVMREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISS 345
            +LL+ +  + +               P       I  K+DL          +  H+  S
Sbjct: 298 RVLLVVDATAPEADDPFALWPEFLQQRPDPAKVTLIRNKADLTGEDIRLQVCDDGHVTIS 357

Query: 346 FT------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397
            +      G+GLE L + +K+ +  + +    S  + +RHL  L      LE   A L  
Sbjct: 358 LSARSTDAGDGLELLRDHLKACMGYE-QTSESSFSARRRHLEALRHASDALEHGRAQLTL 416

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              G +++AE+LR A  SLG+ITG    + LL  IFS  CIGK
Sbjct: 417 AGAG-ELLAEDLRQAQHSLGEITGAFR-DDLLGRIFSSLCIGK 457


>gi|71066697|ref|YP_265424.1| tRNA modification GTPase TrmE [Psychrobacter arcticus 273-4]
 gi|123647608|sp|Q4FPR8|MNME_PSYA2 RecName: Full=tRNA modification GTPase mnmE
 gi|71039682|gb|AAZ19990.1| tRNA modification GTPase trmE [Psychrobacter arcticus 273-4]
          Length = 478

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 161/464 (34%), Positives = 254/464 (54%), Gaps = 34/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      + +IRLSG   + +   +  K +  PR AS   F+  DG ++D+GL+
Sbjct: 19  TIAAIATPLGRGGVGVIRLSGTRAYSIACTLTGKSEFKPRMASFCRFYQADGTVVDEGLV 78

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F  P SFTGED  E   HGG+ + N +L  + ++   + A  GEFS RAF+N K+DL+
Sbjct: 79  LYFKGPHSFTGEDVIELQGHGGMILQNQLLARVFEL-GAKQAGAGEFSYRAFDNDKLDLV 137

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE++AD I + +      ++  +SGE S    Q +++L H+R  +EA +DF +EEDV  
Sbjct: 138 QAEAIADAIDATSAAAASSAIRSLSGEFSKKINQLLEQLIHLRLHVEAAIDFPDEEDVDF 197

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   +   +   +  I   ++  K G+++R+G  +V+ G  NAGKSSL N LA ++ AI
Sbjct: 198 LSDGVIQGKLEQTQEKIQHVLATAKQGQLLRDGIHVVLAGRPNAGKSSLLNRLAGQERAI 257

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTD+ GTTRD L   + L G  + ++DTAG+RET+D VE+ GI+R    +  AD++L++ 
Sbjct: 258 VTDVAGTTRDTLQETVVLNGLTLHLTDTAGLRETEDTVERIGIERARTAITQADILLMVY 317

Query: 307 EINS--KKEIS-----------FPKNIDFIFIGTKSDLYS--------------TYTEEY 339
           ++    ++EI+            P+    + I  KSDL +               Y   Y
Sbjct: 318 DVTCDLEEEITPLQLAEQLFGELPEAKCLLIIANKSDLLNHNSSKGMTSISQEEIYNRGY 377

Query: 340 DHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396
           + + +S  TG G+++L+  + + +   F     S+ +  RHL  L +T  YL  A   L 
Sbjct: 378 EQVNVSCETGAGIDDLVETLCAKVG--FHPPENSLIARTRHLDALRRTAEYLAEAHEQLT 435

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G +++AE+LR A  SLG+ITG    + LL  IF  FCIGK
Sbjct: 436 VFKAG-ELVAESLRQAQHSLGEITGEFSADDLLGKIFGSFCIGK 478


>gi|296417286|ref|XP_002838289.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634217|emb|CAZ82480.1| unnamed protein product [Tuber melanosporum]
          Length = 608

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 156/507 (30%), Positives = 265/507 (52%), Gaps = 73/507 (14%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDG--RILDK 63
           TI+A++T +  +AI+++R+SGP+C  V   +C  +  P PRKA+LR  +  +    +LD 
Sbjct: 102 TIYALATASGRAAIAVVRVSGPACLNVYSSLCPSRPLPTPRKATLRTLYRPNSPKEVLDP 161

Query: 64  GLLIVF-PSPESFTGEDSAEFHVHGGIAVVNGILEELAKM--PNL--RLANPGEFSRRAF 118
           G L++F P+P S TGED  E H+HGG A++  +L  ++ +  P L  R A PGEF+RRAF
Sbjct: 162 GALVLFFPAPNSHTGEDVLELHLHGGPAIIRAVLFSISTLSTPQLSIRPAGPGEFTRRAF 221

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            N ++ L + E+L D +S+ETE QR+LS++  +  LS  Y QW   L   R  +EA +DF
Sbjct: 222 TNNRLSLPQIEALGDTLSAETEQQRKLSVQATTSGLSRKYEQWRRMLLSARGELEAIIDF 281

Query: 179 SEEEDVQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           SE++      ++    V++ +  LK  +  H+     GE++R G  + ++G  NAGKSSL
Sbjct: 282 SEDQQFDTAPAEMCSNVVSLVQELKPMLQLHVDNAVRGELLRGGISLALIGAPNAGKSSL 341

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTF 293
            N +  ++ AIV+   GTTRDV+ + +D+ GY+  ++DTAG+R+ +    +EKEG+ R  
Sbjct: 342 LNRVVGREAAIVSGEAGTTRDVVDLSVDIGGYMALLADTAGLRKAELAGEIEKEGMWRAK 401

Query: 294 LEVENADLILLLKEINSKKE--------ISFPKNI---------------------DFIF 324
             V+++ +++ +  I ++ +        +  P  +                     D + 
Sbjct: 402 KRVQDSHVVIAVLSIETRNDNNGNNTPYLPIPDEVLEVLREAQDQCKPVLIAVNKTDLLH 461

Query: 325 IGTKSDL-----------YSTYTEEYDHLISSF---TGEGLEELINKIKSIL-------- 362
           + T   L           +      + H I+       +G++ L+  +  I         
Sbjct: 462 LPTGQTLPERFLNQITPHFPALQHTHIHGITCTHPSPSDGIQPLLRTLTQIFTQITTAEI 521

Query: 363 -SNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII--AENLRLASVSLG 417
            S+    L  +I +  R    L + + YL+  +  +  +DC  D++  AE LR A+  L 
Sbjct: 522 DSDASSSLGDAIGATDRQRRLLEECISYLDAFLDRIAGEDCETDMVVAAEELRFAAGCLA 581

Query: 418 KIT----GCVDVEQLLDIIFSKFCIGK 440
           +IT    G  DVE++L ++F KFC+GK
Sbjct: 582 QITGIGEGSGDVEEVLGVVFEKFCVGK 608


>gi|170593343|ref|XP_001901424.1| tRNA modification GTPase TrmE family protein [Brugia malayi]
 gi|158591491|gb|EDP30104.1| tRNA modification GTPase TrmE family protein [Brugia malayi]
          Length = 1828

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 171/458 (37%), Positives = 262/458 (57%), Gaps = 46/458 (10%)

Query: 7    TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFGLDGRILDK 63
            TIFA+S+GALP+AIS+IR+SG    +  E +  ++K  PR+   A++R     DG ++D+
Sbjct: 1393 TIFAMSSGALPAAISVIRVSGKESRRCLEELTGREKILPRELFYANIRR----DGELIDR 1448

Query: 64   GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            G+ +  P P++ TGED AEF+VHG  AVV+ +LE LA+  N++ A  GEF++RAF NGK+
Sbjct: 1449 GMAVFLPGPKTSTGEDVAEFYVHGSRAVVDCLLEALAQFDNVQPAKAGEFTKRAFFNGKM 1508

Query: 124  DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
             L E +SLA L+++ T+ QRRL++        +  G+   ++  +R+ +EA +DF ++ +
Sbjct: 1509 TLHEVQSLAYLLAARTQRQRRLALH------RNTLGK--KQIIEVRASVEASIDFGDDVE 1560

Query: 184  VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
             Q    +  ++ I+   +++S    Q K G +I  G +IVILG +N GKSSLFN +A +D
Sbjct: 1561 FQWEDIRVAMSSII---SELSCIQEQMKRGALINEGLRIVILGQTNVGKSSLFNHMANRD 1617

Query: 244  VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLI 302
            +AIV++I GTTRD L I + L    V I DTAGIRE   D +E EGI+RT      AD+I
Sbjct: 1618 MAIVSNIEGTTRDSLEITVQLSSVPVTIIDTAGIREIPLDSLEAEGIQRTLRRAVEADII 1677

Query: 303  LLL----------KEINSKKEISFPKNIDFIFIG-TKSDLYSTYTE---EYDHL-ISSFT 347
            +++          +++ S       K    +F+   K DL S        +  + IS  +
Sbjct: 1678 IVVLDSSICKDFERDVRSVLSWCNLKKDTPVFVALNKCDLRSVPNNILLPWPAISISCIS 1737

Query: 348  GEGLEELINKIKSILSNKFKKL-PFS----IPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
            GEG+  L+     I+ +   +L P S    + S + H   + + +  L  A L  KD   
Sbjct: 1738 GEGISSLLK----IICDYIDELCPISDNSALVSSQIHRLLVKEAISVLTKA-LKAKDVA- 1791

Query: 403  DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             I AE LR  S  + +++G V  EQ+LD IFS FCIGK
Sbjct: 1792 -ITAELLRDVSDCISEMSGIVVNEQILDEIFSSFCIGK 1828


>gi|293400090|ref|ZP_06644236.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306490|gb|EFE47733.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 443

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 150/447 (33%), Positives = 259/447 (57%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRIL 61
           ++TI A+ST A+  AISIIR+SG +  Q+ + +C       +  ++ Y F LD      +
Sbjct: 3   QDTIAAISTAAVDGAISIIRMSGDAAIQIVDSLCSIDLTSKKSHTISYGFILDPITKEEI 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ VF +P++FT ED  E + HGG  V   IL+ L  M   RLA PGEF+RRAF NG
Sbjct: 63  DEVLVSVFRAPKTFTREDIVEINCHGGRYVTKKILQ-LCLMQGARLAEPGEFTRRAFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I +++   R+L+M G+ G +  L   +I  +  I + IE ++D+ E 
Sbjct: 122 RIDLTQAEAINDMILADSNESRKLAMHGIRGSVKKLLEPFIKNILDIIANIEVNIDYPEY 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +DV+  S++ +L  I    + I   + + + G++++ G K  I+G  N GKSSL NAL +
Sbjct: 182 DDVEMLSNEVILPKIQKWLSQIDQLLERAESGQMMKEGIKTAIIGKPNVGKSSLLNALLE 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT+I GTTRD++   + L G  + + DTAGIRET+D+VEK GI+R+   +E+A L
Sbjct: 242 EDKAIVTEIAGTTRDIVEGHIHLGGLTLNLIDTAGIRETEDVVEKIGIERSMKAIEDAQL 301

Query: 302 ILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           I+L+ + +       ++ +   +N   I +  K DL     +    +  S     +E LI
Sbjct: 302 IILVLDASRPLDEEDQQLMQMTENKTRIIVYNKKDL----NQHIKGICISAQHHEIEPLI 357

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLAS 413
           +++  +  +    +   + +++R +  + +  + + +++++    G  LD++  +++ A 
Sbjct: 358 HEVHRLFDSHKIVIEEPVLANERQISQMMKAKKSM-LSAVDAIAMGLELDVVEIDIQEAY 416

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L +I G V  E LLD +F+ FC+GK
Sbjct: 417 TALKEILGEVHREDLLDTLFANFCLGK 443


>gi|11135197|sp|P57132|MNME_BUCAI RecName: Full=tRNA modification GTPase mnmE
 gi|25319358|pir||H84931 thiophene and furan oxidation protein thdF [imported] - Buchnera
           sp. (strain APS)
 gi|10038709|dbj|BAB12744.1| thiophene and furan oxidation protein thdF [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
          Length = 452

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 170/459 (37%), Positives = 250/459 (54%), Gaps = 34/459 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A  T    SA+ I+R+SG    ++       K P  R A+   F   +  ILDKG+
Sbjct: 4   ETIVAQVTCPGKSAVGILRISGFQT-KIVAIKILGKIPLARFATYSNFLDENNEILDKGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P S TGED  E   HG   +++ ++  +  + N+R+A PGEFS RAF NGK+DL
Sbjct: 63  SLWFPAPHSLTGEDVLELQGHGSPLIMDLLIRRILSINNIRMAKPGEFSERAFLNGKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182
           ++AES+ DLI+SETE+  R S+  + G+ S    + ++ +   R  IE+++DFSEEE   
Sbjct: 123 IQAESIDDLINSETELSARASLNSLQGKFSFFIKELMNLIIEFRINIESNIDFSEEEINI 182

Query: 183 ---DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
              D+ N   +E+ +  L LK  +         G ++R G KIVI G  N+GKSSL N L
Sbjct: 183 NMQDIINIKFRELHDKFLKLKATVLK-------GSLLREGKKIVIAGLPNSGKSSLLNIL 235

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           +  D AIVTDIPGTTRD+L  D+ + G   ++ DTAG+R+TDD VE+ GI R +  +  +
Sbjct: 236 SYSDRAIVTDIPGTTRDLLYEDISINGVRCELIDTAGLRDTDDKVERIGIMRAWEMIRKS 295

Query: 300 DLILLL--KEINSKKEIS----FPKNI-----DFIFIGTKSDLYSTY--TEEYDHL---- 342
           D +L +  K ++  K+      F KNI        F+  K+DL       +E D      
Sbjct: 296 DHVLFVIDKTLSKSKQKKICDDFMKNILNNKTQVTFVLNKNDLIKDEFGIKEIDGTAFIS 355

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCG 401
           IS+ TGEG+  L   I  I  N   +  F   + +RH+  L      +L   +   +   
Sbjct: 356 ISARTGEGVNILREHIIKIEKNINNESVF--IARRRHIKQLDLAYDEFLTAENTWRESEN 413

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++++AE+L + S  LG+I G    E LL+ IFS FCIGK
Sbjct: 414 IELLAESLSIISKFLGEIIGQCTSEDLLNHIFSSFCIGK 452


>gi|28952039|ref|NP_239858.2| tRNA modification GTPase TrmE [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681404|ref|YP_002467789.1| tRNA modification GTPase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219681960|ref|YP_002468344.1| tRNA modification GTPase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471078|ref|ZP_05635077.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621693|gb|ACL29849.1| tRNA modification GTPase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624247|gb|ACL30402.1| tRNA modification GTPase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086343|gb|ADP66424.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087508|gb|ADP67587.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 453

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 170/459 (37%), Positives = 250/459 (54%), Gaps = 34/459 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A  T    SA+ I+R+SG    ++       K P  R A+   F   +  ILDKG+
Sbjct: 5   ETIVAQVTCPGKSAVGILRISGFQT-KIVAIKILGKIPLARFATYSNFLDENNEILDKGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P S TGED  E   HG   +++ ++  +  + N+R+A PGEFS RAF NGK+DL
Sbjct: 64  SLWFPAPHSLTGEDVLELQGHGSPLIMDLLIRRILSINNIRMAKPGEFSERAFLNGKMDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182
           ++AES+ DLI+SETE+  R S+  + G+ S    + ++ +   R  IE+++DFSEEE   
Sbjct: 124 IQAESIDDLINSETELSARASLNSLQGKFSFFIKELMNLIIEFRINIESNIDFSEEEINI 183

Query: 183 ---DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
              D+ N   +E+ +  L LK  +         G ++R G KIVI G  N+GKSSL N L
Sbjct: 184 NMQDIINIKFRELHDKFLKLKATVLK-------GSLLREGKKIVIAGLPNSGKSSLLNIL 236

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           +  D AIVTDIPGTTRD+L  D+ + G   ++ DTAG+R+TDD VE+ GI R +  +  +
Sbjct: 237 SYSDRAIVTDIPGTTRDLLYEDISINGVRCELIDTAGLRDTDDKVERIGIMRAWEMIRKS 296

Query: 300 DLILLL--KEINSKKEIS----FPKNI-----DFIFIGTKSDLYSTY--TEEYDHL---- 342
           D +L +  K ++  K+      F KNI        F+  K+DL       +E D      
Sbjct: 297 DHVLFVIDKTLSKSKQKKICDDFMKNILNNKTQVTFVLNKNDLIKDEFGIKEIDGTAFIS 356

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCG 401
           IS+ TGEG+  L   I  I  N   +  F   + +RH+  L      +L   +   +   
Sbjct: 357 ISARTGEGVNILREHIIKIEKNINNESVF--IARRRHIKQLDLAYDEFLTAENTWRESEN 414

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++++AE+L + S  LG+I G    E LL+ IFS FCIGK
Sbjct: 415 IELLAESLSIISKFLGEIIGQCTSEDLLNHIFSSFCIGK 453


>gi|94312541|ref|YP_585751.1| tRNA modification GTPase TrmE [Cupriavidus metallidurans CH34]
 gi|205415800|sp|Q1LH94|MNME_RALME RecName: Full=tRNA modification GTPase mnmE
 gi|93356393|gb|ABF10482.1| GTPase [Cupriavidus metallidurans CH34]
          Length = 475

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 163/475 (34%), Positives = 242/475 (50%), Gaps = 49/475 (10%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A++T      I ++R+SGP    V   +C +    PR A+   F    G ++D GL +
Sbjct: 8   IAAIATAPGRGGIGVVRVSGPDVGAVMRAVCGRALQ-PRHATYLPFLDARGNVIDHGLAL 66

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRAFENGKID 124
            FP+P S+TGE+  E   HGG  V+  +L    E  K   LR+A PGEF+RRAF N K+D
Sbjct: 67  YFPAPNSYTGEEVLELQGHGGPVVMQMLLSRCLEAGKDIGLRVAEPGEFTRRAFLNDKLD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + TE   R +   M GE S      ++K+ H+R  +EA LDF EEE +
Sbjct: 127 LAQAEAVADLIEASTEAAARSAARSMEGEFSKAIHALVEKVIHLRMLVEATLDFPEEE-I 185

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               +      +  ++ D++  + Q + G ++R G  +V+ G  N GKSSL NALA  D+
Sbjct: 186 DFLEASNARGQLTRIREDLAGVLKQARQGSLLREGLSVVLAGQPNVGKSSLLNALAGSDL 245

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIVT I GTTRD +   + ++G  + I DTAG+R +  D VE+ GI+RT+  + +AD++L
Sbjct: 246 AIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLRDDAADEVERIGIERTWEAIRHADIVL 305

Query: 304 LL---------------KEINSKKEISFPKNIDFIFIGTKSDLYST-----YTEEYDHL- 342
            L                 I+ +     P     + +  K DL  +     +     H+ 
Sbjct: 306 HLIDAADYIEHGISETDDHIDDRLSGQLPPGSPIVRVINKIDLAPSVGAMGFGGNRPHVV 365

Query: 343 -----------ISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
                      IS+ TG G++    EL+  I     N+   L     + +RHL  L    
Sbjct: 366 AANGPNPTEIWISARTGAGIDLMRSELLRLIGWQSGNEGAFL-----ARERHLIALRNAE 420

Query: 388 RYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LE+  AS ++    LD+ AE LRLA   L  ITG    + LL  IF++FCIGK
Sbjct: 421 SHLELAEASASQHAQALDLFAEELRLAQDHLNSITGEFTSDDLLGTIFTRFCIGK 475


>gi|190171268|gb|ACE63704.1| ThdF [Cronobacter genomosp. 1]
          Length = 439

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/439 (35%), Positives = 242/439 (55%), Gaps = 31/439 (7%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTT
Sbjct: 187 EVI---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 243

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + 
Sbjct: 244 RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDA 302

Query: 315 SFPKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELIN 356
           + P  I  DFI           +  K+D+       +E   H    +S+ T EG++ L N
Sbjct: 303 TDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGLSEVNGHSLIRLSARTNEGVDVLRN 362

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASV 414
            +K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  
Sbjct: 363 HLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQ 420

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 421 ALSEITGEFTSDDLLGRIF 439


>gi|190171304|gb|ACE63722.1| ThdF [Cronobacter sakazakii]
          Length = 439

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN++
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + + 
Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304

Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358
           P  I  DFI           +  K+D+       +E   H    +S+ T EG++ L N +
Sbjct: 305 PAQIWPDFIARLSAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVDVLRNHL 364

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416
           K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  +L
Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 423 SEITGEFTSDDLLGRIF 439


>gi|221214581|ref|ZP_03587551.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD1]
 gi|221165471|gb|EED97947.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD1]
          Length = 464

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 158/466 (33%), Positives = 250/466 (53%), Gaps = 35/466 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T A    I ++R+S       +   + + +C ++   PR AS   F    G
Sbjct: 5   DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPMIDALCGQRLA-PRHASYVPFLDAQG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   ++ +   LRLA PGEF+R
Sbjct: 64  VPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDVGRAVGLRLAEPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      +D + ++R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVINLRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302

Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDL------YSTYTEEYD 340
           +E AD++L L  ++S+  ++         FP  +  + +  K+DL       +    E D
Sbjct: 303 IERADVVLHL--LDSRTGMTADDDAIAARFPAGVPVVRVLNKTDLTGVPASVAHPAAEGD 360

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
               HL S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+  
Sbjct: 361 LTEVHL-SAKRGDGIDLLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQDHLARAAEH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|78044593|ref|YP_358878.1| tRNA modification GTPase TrmE [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123577255|sp|Q3AG56|MNME_CARHZ RecName: Full=tRNA modification GTPase mnmE
 gi|77996708|gb|ABB15607.1| tRNA modification GTPase TrmE [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 461

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 169/462 (36%), Positives = 258/462 (55%), Gaps = 29/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG-----LD 57
           ++TI A+ST      I I+R+SGP   +  +  FI ++ K   +  S    +G      D
Sbjct: 3   EDTIAAISTPLGEGGIGIVRVSGPGAIEAVKNVFIPRQSKDLSKVPSFTLHYGKIVDPAD 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+I+D+ L+ V  +P+S+TGED  E + HGGI  V  +LE + K   +RLA PGEF++RA
Sbjct: 63  GKIVDEVLVSVMRAPKSYTGEDVVEINCHGGIVAVEKVLELILKQ-GIRLAEPGEFTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I ++TE   +L+   +SGEL         K+ +I +FIE  +D
Sbjct: 122 FLNGRIDLSQAEAVIDIIRAKTEASLKLAGRQLSGELREKINAVRQKIINILAFIEVSID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E E     + +  L +I  + ND+   +S  + G I+R G   VI G  N GKSSL N
Sbjct: 182 YPEYE-FDEVTPETALKNIDEIINDVRRLLSSYERGRILREGITAVIAGKPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL +K  AIVTDIPGTTRDV+   L+L+G  VKI DTAGIRET+D+VEK G+++T   + 
Sbjct: 241 ALLRKKRAIVTDIPGTTRDVIEDYLNLKGIPVKIVDTAGIRETEDLVEKLGVEKTREYLN 300

Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
            AD+ L               +L  IN  K +     ID +      + Y+  T   + +
Sbjct: 301 QADVTLFVVDVSIGIDEDDEKILSLINKDKSLLVINKIDLLQGKVNFEQYAVKTGIKNFV 360

Query: 343 -ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
             S+   EGLE L NK+  IL   +  +   ++ S+ RH  +L + +  L +++      
Sbjct: 361 PFSARNFEGLEILENKLYEILIPEQEGEGESALISNLRHKNYLEKALNSL-LSAKESIAS 419

Query: 401 G--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G  +D++A +L  A   LG ITG    +++++ IFS+FC+GK
Sbjct: 420 GEPVDLVAIDLNEALRELGAITGDALGDEIINEIFSQFCVGK 461


>gi|190171322|gb|ACE63731.1| ThdF [Cronobacter sakazakii]
 gi|190171326|gb|ACE63733.1| ThdF [Cronobacter sakazakii]
          Length = 439

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRVSGQQARNVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN++
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + + 
Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304

Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358
           P  I  DFI           +  K+D+       +E   H    +S+ T EG++ L N +
Sbjct: 305 PAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVDVLRNHL 364

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416
           K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  +L
Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 423 SEITGEFTSDDLLGRIF 439


>gi|190171334|gb|ACE63737.1| ThdF [Cronobacter sakazakii]
          Length = 440

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 12  VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 70

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 71  VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 130

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN++
Sbjct: 131 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 189

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 190 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 246

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + + 
Sbjct: 247 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 305

Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358
           P  I  DFI           +  K+D+       +E   H    +S+ T EG++ L N +
Sbjct: 306 PAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVDVLRNHL 365

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416
           K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  +L
Sbjct: 366 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 423

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 424 SEITGEFTSDDLLGRIF 440


>gi|317051763|ref|YP_004112879.1| tRNA modification GTPase TrmE [Desulfurispirillum indicum S5]
 gi|316946847|gb|ADU66323.1| tRNA modification GTPase TrmE [Desulfurispirillum indicum S5]
          Length = 458

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 163/467 (34%), Positives = 258/467 (55%), Gaps = 43/467 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----DG 58
           +ETI AV+T     A+ I+R+SGP+   + +  F  +  +P  +      +FGL     G
Sbjct: 4   QETITAVATAPGEGAVGIVRVSGPAAPTLFQQFFRSRNLQPVQQPKPRHLYFGLFLDEGG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             LD+ L +  P P SFTGED  EFH HGG  +++ ILE  +     RLA PGEFSRRAF
Sbjct: 64  HPLDQVLAVHMPGPHSFTGEDVVEFHCHGGSTIISRILELCST--RCRLAQPGEFSRRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ D+I S+T    R++ + M G L     +   +L  I+  +EA ++F
Sbjct: 122 LNGKLDLTQAEAIIDVIRSKTPEAARIASDVMQGRLRDTLQELRGELIAIQGNLEATMEF 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+E D+   S+  +   +  ++  + + ++  + G ++R+G  + I+G  N GKSSL NA
Sbjct: 182 SDE-DIAPASTTALAQRLTGVRQQLETLLAHSRTGMLMRDGAAVAIVGKPNVGKSSLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L++ + +IVT IPGTTRD++   + + G  +++ DTAGIR++ D VE+ GI+RT   ++ 
Sbjct: 241 LSRSERSIVTAIPGTTRDIVEQYISVHGLPIRLLDTAGIRQSQDAVEQIGIERTRSAIQQ 300

Query: 299 ADLILLLKEINSKK-----EIS-FPKNIDFIFIGTKSDLYSTYTEE----YDH---LISS 345
           AD+IL L + +        EI+   +    + +  KSDL     E      DH   L +S
Sbjct: 301 ADIILWLLDTSRPADEEDHEIARLVQGKPCLVLLNKSDLPRAMDESILHAMDHDTILTTS 360

Query: 346 F-TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNE------ 397
             TG+GLE+L++ +       F+KL  S   H+ H   L    R  E MA+  E      
Sbjct: 361 LQTGDGLEKLMDTL-------FRKL--SGAHHESHSNPLLSRARQRESMANALESLGHAQ 411

Query: 398 ----KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +  G ++++ +++ A   LG+I G V  + +LD IFS+FCIGK
Sbjct: 412 DTLIRGLGYELVSMDIQHAFSYLGEILGEVVTDDILDTIFSEFCIGK 458


>gi|190171272|gb|ACE63706.1| ThdF [Cronobacter malonaticus]
 gi|190171274|gb|ACE63707.1| ThdF [Cronobacter malonaticus]
 gi|190171278|gb|ACE63709.1| ThdF [Cronobacter malonaticus]
 gi|190171280|gb|ACE63710.1| ThdF [Cronobacter malonaticus]
 gi|190171282|gb|ACE63711.1| ThdF [Cronobacter malonaticus]
 gi|190171284|gb|ACE63712.1| ThdF [Cronobacter malonaticus]
          Length = 439

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN++
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + + 
Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304

Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358
           P  I  DFI           +  K+D+       +E   H    +S+ T EG++ L N +
Sbjct: 305 PAQIWPDFIARLPAKLPITVVRNKADVTGEQPGLSEVNGHSLIRLSARTNEGVDVLRNHL 364

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416
           K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  +L
Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 423 SEITGEFTSDDLLGRIF 439


>gi|190171270|gb|ACE63705.1| ThdF [Cronobacter genomosp. 1]
 gi|190171276|gb|ACE63708.1| ThdF [Cronobacter malonaticus]
 gi|190171298|gb|ACE63719.1| ThdF [Cronobacter sakazakii]
 gi|190171300|gb|ACE63720.1| ThdF [Cronobacter sakazakii]
 gi|190171302|gb|ACE63721.1| ThdF [Cronobacter sakazakii]
 gi|190171306|gb|ACE63723.1| ThdF [Cronobacter sakazakii]
 gi|190171308|gb|ACE63724.1| ThdF [Cronobacter sakazakii]
 gi|190171310|gb|ACE63725.1| ThdF [Cronobacter sakazakii]
 gi|190171320|gb|ACE63730.1| ThdF [Cronobacter sakazakii]
 gi|190171324|gb|ACE63732.1| ThdF [Cronobacter sakazakii]
 gi|190171330|gb|ACE63735.1| ThdF [Cronobacter sakazakii]
 gi|190171336|gb|ACE63738.1| ThdF [Cronobacter sakazakii]
 gi|190171338|gb|ACE63739.1| ThdF [Cronobacter sakazakii]
 gi|190171340|gb|ACE63740.1| ThdF [Cronobacter sakazakii]
 gi|190171342|gb|ACE63741.1| ThdF [Cronobacter sakazakii]
          Length = 439

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN++
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + + 
Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304

Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358
           P  I  DFI           +  K+D+       +E   H    +S+ T EG++ L N +
Sbjct: 305 PAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVDVLRNHL 364

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416
           K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  +L
Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 423 SEITGEFTSDDLLGRIF 439


>gi|93007296|ref|YP_581733.1| tRNA modification GTPase TrmE [Psychrobacter cryohalolentis K5]
 gi|92394974|gb|ABE76249.1| tRNA modification GTPase trmE [Psychrobacter cryohalolentis K5]
          Length = 487

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 159/464 (34%), Positives = 250/464 (53%), Gaps = 34/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      + +IRLSG   + +   +  K    PR AS   F+  DG ++D+GL+
Sbjct: 28  TIAAIATPLGRGGVGVIRLSGTHAYSIACTLTGKSAFKPRMASFCRFYQADGTVIDEGLV 87

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F  P SFTGED  E   HGG+ + N +L  + ++   + A+ GEFS RAF+N K+DL+
Sbjct: 88  LYFKGPHSFTGEDVIELQGHGGMILQNQLLARVFEL-GAKQASAGEFSYRAFDNDKLDLV 146

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE++AD I + +      ++  +SGE S    Q +++L H+R  +EA +DF +EEDV  
Sbjct: 147 QAEAIADAIDATSAAAASSAIRSLSGEFSQKINQLLEQLIHLRLHVEAAIDFPDEEDVDF 206

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   +   +   +  I   ++  K G+++R+G  +V+ G  NAGKSSL N LA ++ AI
Sbjct: 207 LSDGVIQGKLEQTQEKIQQVLATAKQGQLLRDGIHVVLAGRPNAGKSSLLNRLAGQERAI 266

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTD+ GTTRD L   + L G  + ++DTAG+RET+D VE+ GI+R    +  AD++L++ 
Sbjct: 267 VTDVAGTTRDTLQETVVLNGLTLHLTDTAGLRETEDTVERIGIERARTAIAQADMLLMVY 326

Query: 307 EINSKKE-------------ISFPKNIDFIFIGTKSDLYST--------------YTEEY 339
           ++    E                P+    + I  KSDL +               +   Y
Sbjct: 327 DVTRDLEEESTPLQLAEQLFGELPEAKRLLIIANKSDLLNNNSSKEITSISQQEIHNRGY 386

Query: 340 DHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396
           + + +S  TG G+++L+  + + +   F     S+ +  RHL  L +T  YL  A   L 
Sbjct: 387 EQVNVSCETGAGIDDLVETLCAKVG--FHPPENSLIARTRHLDALRRTAEYLAEAHEQLT 444

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G +++AE+LR A  SLG+ITG    + LL  IF  FCIGK
Sbjct: 445 VFKAG-ELVAESLRQAQHSLGEITGEFSADDLLGKIFGSFCIGK 487


>gi|237749241|ref|ZP_04579721.1| tRNA modification GTPase mnmE [Oxalobacter formigenes OXCC13]
 gi|229380603|gb|EEO30694.1| tRNA modification GTPase mnmE [Oxalobacter formigenes OXCC13]
          Length = 462

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 165/465 (35%), Positives = 250/465 (53%), Gaps = 28/465 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK---PF-PRKASLRYFFGL 56
           M  +   I A++T      + I+R+SG +   +   + K      P  PR A    F   
Sbjct: 1   MKTDSSPIVAIATPPGRGGVGIVRVSGKNLDPLINELFKDTMADLPLTPRYAHFLPFLDA 60

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEF 113
           D  I+D+GL I F +P SFTGED  E   HGG  V+  +L+      +  +LR+A PGEF
Sbjct: 61  DKSIIDEGLAIYFKAPNSFTGEDVLELQGHGGTTVLQMVLKRCLLAGEKIDLRMAEPGEF 120

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N +IDL +AE++ADLI + TE   R +   +SG  S    + +  +  +R  +E
Sbjct: 121 TRRAFLNDRIDLAQAEAIADLIDATTEEAVRSASRSLSGVFSKEIHELVANIIQLRMMVE 180

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           + LDF EE D+     + V   I  ++  +S+ I+Q   G ++R G  +V+ G +N GKS
Sbjct: 181 SSLDFPEE-DIDFLKKENVEGQIANIQEALSAIIAQSAQGALLREGIHVVLAGQTNVGKS 239

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKR 291
           SL N LA  +VAIVT I GTTRD +T  + +EG  V + DTAGIR    +D VE+ GI+R
Sbjct: 240 SLLNTLAGSNVAIVTPIAGTTRDKITETIQIEGVPVTLIDTAGIRANSAEDEVERIGIER 299

Query: 292 TFLEVENADLILLL-------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-- 342
           T+ E+  AD+IL L          + K    FP+NI  I I  K D+ S +    D +  
Sbjct: 300 TWTEIGKADVILHLLDASLGPTRADEKIAADFPENIPVIQIWNKIDI-SGHRPSVDSMFG 358

Query: 343 -----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--L 395
                +S+ T +G++ L +++  I +   +    +  + +RHL  +    ++L +AS   
Sbjct: 359 ITQVYLSTQTEQGIDLLRDELLKI-AGWTQTGESTYLARERHLTAMKVAEQHLAIASEHA 417

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +  +D++AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 418 TAANPSIDLLAEELRLAQDALNSITGEFTSDDLLGLIFSRFCIGK 462


>gi|289677543|ref|ZP_06498433.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. syringae
           FF5]
          Length = 446

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 160/451 (35%), Positives = 240/451 (53%), Gaps = 26/451 (5%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFP 70
           ++T      + I+RLSGP   +  E I  +    PR A    F    G++LD+G+ + FP
Sbjct: 1   IATAQGRGGVGIVRLSGPLAGKAAEAIIGRTLK-PRFAHYGPFVDDAGQVLDEGIALYFP 59

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
            P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N K+DL +AE+
Sbjct: 60  GPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLNDKLDLAQAEA 118

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +ADLI + +    R ++  + G  S       +KL  +R ++EA +DF EEE +   +  
Sbjct: 119 IADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE-IDFLADG 177

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
            VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA ++ AIVT+I
Sbjct: 178 HVLKMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTEI 237

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD ILL+ +  +
Sbjct: 238 AGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEADRILLVVDATA 297

Query: 311 KKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISSFT----GEGL 351
            +               P       I  K+DL        T    H+  S +    GEGL
Sbjct: 298 PEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVTISLSARSGGEGL 357

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENL 409
           E L   +K+ +  + +    S  + +RHL  L      LE   A L     G +++AE+L
Sbjct: 358 ELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAGAG-ELLAEDL 415

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 416 RQAQQALGEITGAFSSDDLLGRIFSSFCIGK 446


>gi|261190881|ref|XP_002621849.1| mitochondrial GTPase [Ajellomyces dermatitidis SLH14081]
 gi|239590893|gb|EEQ73474.1| mitochondrial GTPase [Ajellomyces dermatitidis SLH14081]
          Length = 609

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 178/553 (32%), Positives = 273/553 (49%), Gaps = 114/553 (20%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           ++    TI+A+ST    +AI+I+R+SGP+C Q+   +C K   P PR A+LR  F     
Sbjct: 58  LDEPSPTIYALSTAPGRAAIAIVRISGPACVQIYNALCPKSPLPEPRVAALRTLFDPSVP 117

Query: 58  ---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP----------- 103
                ILD+ +++ FP+P++ TGED  E H+HGG AVV  +L  + +             
Sbjct: 118 LSVNSILDRAVVLHFPAPKTVTGEDVLELHIHGGPAVVKAVLNAIPRCAESASSDKFAPS 177

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
           ++R A PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G +  L+  Y +W  
Sbjct: 178 SIRYAEPGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAIRGTNDSLAVRYERWRQ 237

Query: 164 KLTHIRSFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
           +L + R  +EA +DFSE+    E  + F S  +  +   L   I+ HI     GE++RNG
Sbjct: 238 QLLYTRGEMEALIDFSEDQHFDESTEEFVSS-ITGETRNLVRQINMHIENASKGELLRNG 296

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ +LG  NAGKSSL N +  ++ AIV+   GTTRD++ + +DL GY  K  D AG+R 
Sbjct: 297 IKVALLGAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGYFCKFGDMAGLRS 356

Query: 280 TD---------DIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF---PKNID--- 321
                        VE+EGI+R       +D++++   L+E +S + +     P+ ID   
Sbjct: 357 GHIAQAGQMPIGAVEQEGIRRAKARALESDVVIVVLSLEEGDSGRGVKLVLEPEVIDAVQ 416

Query: 322 --------FIFIGTKSDLYSTYTE---EYDHLISSFTGE--------------------- 349
                    I    K D Y+  T        L++S  GE                     
Sbjct: 417 SCIALEKHMIVAVNKFDKYTPATNTDGTAQGLVNSLAGEITSLVPHIVQDQIFLISCREA 476

Query: 350 ---------------GLEELINKIKSILS--------NKFKKLPFSIP---SHK------ 377
                           L+ELI   K + +        +KF KL +      +H+      
Sbjct: 477 ENEQSETADPGNIQTLLKELIRTFKRMSTPSELENGNDKFDKLYWEDSLGVTHRQSSNLQ 536

Query: 378 ---RHLYH-LSQTVRYLEMASLNEK-DCGLDII--AENLRLASVSLGKITG---CVDVEQ 427
              +HL   LSQT +  + A   E+ +  +DI+  AE+LR A+  L KITG     DVE 
Sbjct: 537 KCVQHLNDFLSQTCQTPDNAGNAEQIELNIDIVTAAEHLRFAADCLAKITGRGESGDVED 596

Query: 428 LLDIIFSKFCIGK 440
           +L ++F KFC+GK
Sbjct: 597 VLGVVFEKFCVGK 609


>gi|190171258|gb|ACE63699.1| ThdF [Cronobacter dublinensis]
          Length = 439

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN++
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + + 
Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304

Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358
           P  I  DFI           +  K+D+       +E   H    +S+ T EG++ L N +
Sbjct: 305 PAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVDVLRNHL 364

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416
           K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  +L
Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 423 SEITGEFTSDDLLGRIF 439


>gi|84514918|ref|ZP_01002281.1| tRNA modification GTPase [Loktanella vestfoldensis SKA53]
 gi|84511077|gb|EAQ07531.1| tRNA modification GTPase [Loktanella vestfoldensis SKA53]
          Length = 393

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 148/402 (36%), Positives = 229/402 (56%), Gaps = 17/402 (4%)

Query: 44  FPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP 103
            P    LR      G ++D+ L++ F   +SFTGED  E H+HG  AVV+ +L  L   P
Sbjct: 4   VPVARGLRALRDRAGDLVDEALVLRFADGKSFTGEDVVELHLHGSPAVVSAVLRILGDDP 63

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
            +R A  GEF+RRA  NG++DL + E LADLI +ETE QRR ++   SG L  +   W  
Sbjct: 64  AMRPAEAGEFTRRALTNGRLDLAQVEGLADLIDAETESQRRQAVRVFSGALGEIADSWRK 123

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKI 222
           +L    + +EA +DF +E+          + D+L  ++++++   +  ++ E +R+G+++
Sbjct: 124 RLIRAAALLEATIDFVDED--VPVDVVPEVRDLLQAVRSEMAREAAGVRMAERLRDGFEV 181

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  N GKS+L N LA++DVAI ++I GTTRDV+ + LDL+G  V + DTAG+R+TDD
Sbjct: 182 AIVGAPNVGKSTLMNRLARRDVAITSEIAGTTRDVIEVRLDLDGIPVTLLDTAGLRDTDD 241

Query: 283 IVEKEGIKRTFLEVENADLI--LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
           +VE  G+ R     E AD+   +LL       +++       I++  K+D  +       
Sbjct: 242 LVESLGVARARARAEQADMRVHMLLDAPVPSHDLAAGD----IYVRAKADTGAGGG---- 293

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEK 398
             +S  +G G+E LI  I   L  +   +  ++   +RH   L + V  L+ A   L+ +
Sbjct: 294 LAVSGLSGMGVEALIALISGELGRRVASVGLAM--RERHRVALLRAVTSLDDAGAWLDAE 351

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  LD+IAE+LR A  ++  + G VDVEQ+LD IFS FCIGK
Sbjct: 352 DGMLDLIAEDLRTAIRAVDSLVGRVDVEQVLDEIFSSFCIGK 393


>gi|167587873|ref|ZP_02380261.1| tRNA modification GTPase TrmE [Burkholderia ubonensis Bu]
          Length = 464

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 153/463 (33%), Positives = 243/463 (52%), Gaps = 29/463 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T A    I ++R+S       +   + + +C ++   PR AS   F    G
Sbjct: 5   DSDPIVAIATAAGRGGIGVVRVSFGRRGEAAALPLIDALCGQRLA-PRHASYVPFLDEHG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 64  APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRSAGLRLAEPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHTLVDDVITLRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302

Query: 296 VENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDLY---------STYTEEY 339
           +E AD++L L +               FP  +  + +  K+DL          +   +  
Sbjct: 303 IERADVVLHLLDARGGMTADDEAIAARFPAGVPVVRVLNKTDLTGAPASVAHPAAQGDLT 362

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNE 397
           +  +S+  G+G++ L  ++  I   +       + + +RHL  L     +L +A+    +
Sbjct: 363 EVRLSAKRGDGIDLLRGELLRIAGWQAGAEGVYL-ARERHLVALRAAQEHLALAADHAEQ 421

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 422 RAQSLDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 464


>gi|332995875|gb|AEF05930.1| tRNA modification GTPase [Alteromonas sp. SN2]
          Length = 462

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 160/459 (34%), Positives = 245/459 (53%), Gaps = 29/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SGP    + E +       PR A+   F      ++D+G+
Sbjct: 9   DTITAQATAPGRGGVGIVRVSGPYAKAIAEVLVPTALT-PRLATYTPFVDSQQNVIDQGI 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P SFTGED  E   HGG  V++ +++ +      RLANPGEFS +AF N K+DL
Sbjct: 68  ALFFKGPNSFTGEDVLELQGHGGQVVMDMLIDAVLSTGKARLANPGEFSEQAFINDKLDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + ++   R ++  + GE S+      D++ H+R ++EA +DF EEE + 
Sbjct: 128 AQAEAIADLIDASSKQAARSALRSLQGEFSTQIQTLSDQIVHLRMYVEAAIDFPEEE-ID 186

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  +V  D+  +   +     Q K G ++R G ++VI G  NAGKSSL NALA +D A
Sbjct: 187 FLSDGKVSGDLAAILAHLQVVREQAKQGSLLREGMQVVIAGRPNAGKSSLLNALAGRDSA 246

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + + G  V I DTAG+R++ D VEK GI+R +  +  AD +L +
Sbjct: 247 IVTEIAGTTRDVLKEHIHINGMPVHIIDTAGLRDSPDKVEKIGIERAWQAISEADHVLFV 306

Query: 306 KEINSKKEIS------------FPKNIDFIFIGTKSDLY-------STYTEEYDHL---I 343
            + ++  +I+             P+ I    I  K+DL           TE  D     I
Sbjct: 307 TD-STTTDIADPYKIWPEFMARLPEGIPTTVIKNKADLSDLQVGLNQVKTEHGDMPVINI 365

Query: 344 SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-G 401
           S+   +G++ L + + K++  +   +  F   + +RHL  L +   Y+ +      D   
Sbjct: 366 SAKQSDGIDTLRDHLAKTMGFDTTTEGQFI--ARRRHLDALEKAYEYVVIGEQQLHDAMA 423

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 424 GELLAEELRLAHQSLCEITGEFTSDDLLGKIFSSFCIGK 462


>gi|188993859|ref|YP_001905869.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv.
           campestris str. B100]
 gi|205829191|sp|B0RMM4|MNME_XANCB RecName: Full=tRNA modification GTPase mnmE
 gi|167735619|emb|CAP53837.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv.
           campestris]
          Length = 446

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 152/449 (33%), Positives = 241/449 (53%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN    TI A++T A    I I+RLSGP   Q+   +        R A    F    G +
Sbjct: 1   MNASPSTIVAIATAAGTGGIGIVRLSGPQSVQIAAALGIAGLQ-SRHARYARFRDAQGEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + FP+P SFTGE+  E   HG   ++  ++     +   R A  GEFS RAF N
Sbjct: 60  IDDGIAVWFPAPHSFTGEEVVELQGHGSPVLLRQLVARCIAL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       + LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRSLDGVFSRRVDAVSESLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  +      +V  ++   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 EP-LDTLGGAQVREELTRTRALLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+RE  D +E+EG++R   E++ AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDAIEREGMRRARAELQRAD 297

Query: 301 LILLLKEINSKKEI--SFPKNIDFI----FIGTKSDLYSTYTE-EYDHL-ISSFTGEGLE 352
           L L++ +    +    +    ID +    +I  K DL +     + D + +S+ TG+GLE
Sbjct: 298 LALIVLDARDPQAARDALGDAIDAVPRRLWIHNKCDLLAVAGPMDADAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            L  +++ + L +  + +     +  RH+  L +  ++ + A L  +   L++ AE LRL
Sbjct: 358 HLHTRLRELALGDGIESVDGEFSARTRHVDALHRAEQHADAADLELRYEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446


>gi|226294718|gb|EEH50138.1| tRNA modification GTPase GTPBP3 [Paracoccidioides brasiliensis
           Pb18]
          Length = 667

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 165/503 (32%), Positives = 260/503 (51%), Gaps = 69/503 (13%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-----DGRI 60
           TI+A+ST    +AI+IIR+SGP C Q+ + +C K   P PR ASL   +          I
Sbjct: 165 TIYALSTAPGRAAIAIIRVSGPGCVQIYKALCPKSPLPTPRVASLHTLYDPLLPPSINTI 224

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-----------NLRLAN 109
           LD+ +++ FP+P++ TGED  E HVHGG AVV  +L  + +             ++R A 
Sbjct: 225 LDRAMVLYFPAPKTVTGEDLLELHVHGGPAVVKAVLNAIPRCTKVDFTGSNFPLSIRYAE 284

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G S  L++ Y +W  +L + R
Sbjct: 285 PGEFTRRAFLNDRLSLPQIEALGNTLSAETEQQRRLAVRGTSDALATRYERWHQQLLYAR 344

Query: 170 SFIEADLDFSEEEDVQNFSSKEVL---NDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
             +EA +DFSE++     + + VL   ++I  L   I+ H+     GE++RNG K+ +LG
Sbjct: 345 GEMEALIDFSEDQHFDESAEEFVLSVTDEIRNLVRQINLHVENASKGELLRNGIKVALLG 404

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD---- 282
             NAGKSSL N +  ++ AIV+   GTTRD++ + +D+ G+  K  D AG+R        
Sbjct: 405 APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGFFCKFGDMAGLRPDHSAQAG 464

Query: 283 ------IVEKEGIKRTFLEVENADLILL---LKEINSKKEISF---PKNIDFI--FIGTK 328
                  VEKEGI+R       +D++++   ++E +   E      P+ +D +   +   
Sbjct: 465 QMPPIGAVEKEGIRRAKARALESDVVIVVLSVEECDGGTEAKLVLEPEVVDAVRSCLTLG 524

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL------------------- 369
            ++     +      S  T    EE   ++   + +KF  +                   
Sbjct: 525 KNVIVAVNKADKCTTSMITAGTREEFFGRLAREIRSKFPHVAEDQIILISCREAENEQSE 584

Query: 370 ---PFSIPSHKRHLY---HLSQTVRYLEMASLNEK-DCGLDII--AENLRLASVSLGKIT 420
              P +I      L+    LSQT +  E A   E+ +  +DI+  AE+LR A+  L KIT
Sbjct: 585 TPDPGNIQILLGGLHLNDFLSQTEQTPENAENAEQIELNIDIVTAAEHLRFAADCLAKIT 644

Query: 421 G---CVDVEQLLDIIFSKFCIGK 440
           G     DVE +L ++F KFC+GK
Sbjct: 645 GRGESGDVEDVLGVVFEKFCVGK 667


>gi|90194070|gb|ABD92596.1| ThdF [Gallibacterium anatis]
          Length = 436

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/444 (35%), Positives = 249/444 (56%), Gaps = 43/444 (9%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SGP   QV + +  K    PR A+   F  +DG +LD+G+ + F +P SFTGE
Sbjct: 7   GVGILRVSGPLSEQVAKEVLGKTLK-PRFANYLPFKDIDGSVLDQGIALFFKAPNSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ + ++  +RLA PGEFS +AF N KIDL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQVILDLLLKRILQIKGIRLARPGEFSEQAFLNDKIDLAQAEAIADLIDAS 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S+   Q +D+L ++R+++EA +DF +EE +   +  ++   LN 
Sbjct: 126 SEQAARSALKSLQGEFSTKVHQLVDELIYLRTYVEAAIDFPDEE-IDFLADGKIEAHLNQ 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+    ++    SQ K G ++R G K+VI G  NAGKSSL NAL+ +D AIVTD+ GTTR
Sbjct: 185 IIAKVAEVQ---SQAKQGSLLREGMKVVIAGRPNAGKSSLLNALSGRDAAIVTDVAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI- 314
           DVL   + L+G  + I DTAG+R   D VE+ GI+R + E++ AD +L + +  +  E  
Sbjct: 242 DVLREHIHLDGMPLHIIDTAGLRTATDEVERIGIERAWQEIDQADRVLFMLDSTTTDETL 301

Query: 315 ----------SFPKNIDFIFIGTKSDL------------YSTYTEEYDHLISSFTGEGLE 352
                       P +I    I  K+D+            Y+T T      +S+ T +G++
Sbjct: 302 PEKIWPEFMSRLPPSIPVTIIRNKADISSETEGIRTENGYTTIT------LSAKTQQGIQ 355

Query: 353 ELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENL 409
            L   +K SI      +  F   + +RHL  L Q  ++L+     L +   G +++AE L
Sbjct: 356 LLKAHLKESIGYQTVTEGGFL--ARRRHLEALEQAAQHLQQGHIQLTQFYAG-ELLAEEL 412

Query: 410 RLASVSLGKITGCVDVEQLLDIIF 433
           ++A  +L +ITG    + LL  IF
Sbjct: 413 KMAQNALSEITGQFTSDDLLGNIF 436


>gi|221201821|ref|ZP_03574858.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2M]
 gi|221207673|ref|ZP_03580681.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2]
 gi|221172519|gb|EEE04958.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2]
 gi|221178241|gb|EEE10651.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2M]
          Length = 464

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 158/466 (33%), Positives = 249/466 (53%), Gaps = 35/466 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T A    I ++R+S       +   + + +C ++   PR AS   F    G
Sbjct: 5   DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPMIDALCGQRLA-PRHASYVPFLDAQG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   ++ +   LRLA PGEF+R
Sbjct: 64  VPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDVGRAVGLRLAEPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVIDLRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302

Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDL------YSTYTEEYD 340
           +E AD++L L  ++S+  ++         FP  +  + +  K+DL       +    E D
Sbjct: 303 IERADVVLHL--LDSRTGMTADDDAIAARFPAGVPVVRVLNKTDLTGVPASVAHPAAEGD 360

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
               HL S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+  
Sbjct: 361 LTEVHL-SAKRGDGIDLLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQDHLARAAEH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|205422352|sp|Q1Q7V4|MNME_PSYCK RecName: Full=tRNA modification GTPase mnmE
          Length = 478

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 159/464 (34%), Positives = 250/464 (53%), Gaps = 34/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      + +IRLSG   + +   +  K    PR AS   F+  DG ++D+GL+
Sbjct: 19  TIAAIATPLGRGGVGVIRLSGTHAYSIACTLTGKSAFKPRMASFCRFYQADGTVIDEGLV 78

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F  P SFTGED  E   HGG+ + N +L  + ++   + A+ GEFS RAF+N K+DL+
Sbjct: 79  LYFKGPHSFTGEDVIELQGHGGMILQNQLLARVFEL-GAKQASAGEFSYRAFDNDKLDLV 137

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE++AD I + +      ++  +SGE S    Q +++L H+R  +EA +DF +EEDV  
Sbjct: 138 QAEAIADAIDATSAAAASSAIRSLSGEFSQKINQLLEQLIHLRLHVEAAIDFPDEEDVDF 197

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   +   +   +  I   ++  K G+++R+G  +V+ G  NAGKSSL N LA ++ AI
Sbjct: 198 LSDGVIQGKLEQTQEKIQQVLATAKQGQLLRDGIHVVLAGRPNAGKSSLLNRLAGQERAI 257

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTD+ GTTRD L   + L G  + ++DTAG+RET+D VE+ GI+R    +  AD++L++ 
Sbjct: 258 VTDVAGTTRDTLQETVVLNGLTLHLTDTAGLRETEDTVERIGIERARTAIAQADMLLMVY 317

Query: 307 EINSKKE-------------ISFPKNIDFIFIGTKSDLYST--------------YTEEY 339
           ++    E                P+    + I  KSDL +               +   Y
Sbjct: 318 DVTRDLEEESTPLQLAEQLFGELPEAKRLLIIANKSDLLNNNSSKEITSISQQEIHNRGY 377

Query: 340 DHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396
           + + +S  TG G+++L+  + + +   F     S+ +  RHL  L +T  YL  A   L 
Sbjct: 378 EQVNVSCETGAGIDDLVETLCAKVG--FHPPENSLIARTRHLDALRRTAEYLAEAHEQLT 435

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G +++AE+LR A  SLG+ITG    + LL  IF  FCIGK
Sbjct: 436 VFKAG-ELVAESLRQAQHSLGEITGEFSADDLLGKIFGSFCIGK 478


>gi|194016355|ref|ZP_03054969.1| tRNA modification GTPase TrmE [Bacillus pumilus ATCC 7061]
 gi|194011828|gb|EDW21396.1| tRNA modification GTPase TrmE [Bacillus pumilus ATCC 7061]
          Length = 459

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 163/461 (35%), Positives = 260/461 (56%), Gaps = 29/461 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG--LDGR-- 59
           +TI A+ST     AI+IIRLSGP   Q+ + + K  K+K      S    +G  +D R  
Sbjct: 2   DTIAAISTPMGEGAIAIIRLSGPEAVQIADRMYKGPKEKKLVSVDSHTIHYGHIVDARTD 61

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++++ ++ V  +P++FT ED  E + HGGI  VN +L+ LA     RLA PGEF++RAF
Sbjct: 62  QVIEEVMVSVLRAPKTFTREDVIEINCHGGIVTVNKVLQ-LALREGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L  +   ++    + IE ++D+
Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAITQMEGRLSGLVQRLRGEILETLAHIEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     +K +I S +S  + G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEYDDVEEMTHRVLVEKATSVKKEIESLLSTSQQGKILREGLSTVIIGRPNVGKSSLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 241 LVQETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300

Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------- 342
           ADLILL+  +N  +E+S            +D I I  K+DL      E+   L       
Sbjct: 301 ADLILLV--LNYSEELSEEDIKLFEAVSGMDIIVIVNKTDLEPKLDVEKVKQLAKDRPVV 358

Query: 343 -ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
             S    +G++EL   I+S+  +   +    +  S+ RH+  L    + +E A      D
Sbjct: 359 TTSLLQEKGIDELEMAIQSLFFTGSIESGDLTYVSNTRHIALLQAAKQSIEDALEGIAMD 418

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DI+  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 419 VPIDIVQIDLTRCWEQLGEIIGDAVHESLIDQLFSQFCLGK 459


>gi|194291282|ref|YP_002007189.1| tRNA modification gtpase trme [Cupriavidus taiwanensis LMG 19424]
 gi|193225117|emb|CAQ71128.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Cupriavidus taiwanensis LMG 19424]
          Length = 475

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 247/478 (51%), Gaps = 41/478 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   +  I A++T      I ++R+SGP    V   +C +    PR A+   F   +G++
Sbjct: 1   MTAPQLPIAAIATAPGRGGIGVVRVSGPDVGPVMRAVCGQALK-PRHATYLPFLDGNGKV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRA 117
           +D GL + FP+P S+TGE+  E   HGG  V+  +L    +  +   LRLA PGEF+RRA
Sbjct: 60  IDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGDGIGLRLAEPGEFTRRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K+DL +AE++ADLI + TE   R +   M GE S+   Q +DK+ H+R  +EA LD
Sbjct: 120 FLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSNAIRQLVDKVIHLRMLVEATLD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EEE +      +    +  +++++ + ++Q + G ++R G  +V+ G  N GKSSL N
Sbjct: 180 FPEEE-IDFLEQSDARGQLATIRDELGAVLAQARQGALLREGLSVVLAGQPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEV 296
           ALA  ++AIVT I GTTRD +   + ++G  + I DTAG+R E  D VE+ GI+RT+  +
Sbjct: 239 ALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLREEAADEVERIGIERTWDAI 298

Query: 297 ENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTE---- 337
             AD++L L +               I+ K     P     + I  K D      E    
Sbjct: 299 RRADIVLHLVDATDYLRHGLSEIDDAIDDKLSGQLPPGAPIVRIVNKIDKAPAVGEMMFG 358

Query: 338 -EYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
               H+            IS+ TG G+E L  ++  ++  +      +  + +RHL  L 
Sbjct: 359 GNRPHVVAANGPNPTEIWISARTGAGIELLRRELLRLVGWQSGN-EGTFLARERHLTALR 417

Query: 385 QTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           Q    L++A+     +   LD+ AE LRLA   L  ITG    + LL  IF++FCIGK
Sbjct: 418 QAQSRLDVAAEQSQRQAQALDLFAEELRLAQEHLNSITGEFTSDDLLGTIFTRFCIGK 475


>gi|313202487|ref|YP_004041145.1| tRNA modification GTPase TrmE [Methylovorus sp. MP688]
 gi|312441803|gb|ADQ85909.1| tRNA modification GTPase TrmE [Methylovorus sp. MP688]
          Length = 446

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 160/449 (35%), Positives = 250/449 (55%), Gaps = 21/449 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      I ++R+SGP+  Q+   +     P PR A+   F    G+++D G+
Sbjct: 5   DTIAAIATAPGSGGIGVVRISGPASAQIAAAVLGHCPP-PRHAAYLPFKEAGGQLIDSGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I +  P S+TGED  E   HGG A++  +L    ++   R A PGEF+RRAF N K+DL
Sbjct: 64  AIFYAGPHSYTGEDVLELQAHGGPALMQLLLLRCLQL-GARQAEPGEFTRRAFLNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++AD+I++ T    R ++  +SGE S      ++ L ++R ++EA LDF +E D+ 
Sbjct: 123 AQAEAVADVINAATAEAARSAVRSLSGEFSRYIQDLLESLINLRMYVEACLDFPDE-DID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S   V   +  + + +       + G ++R G ++V++G  N GKSSL N LA ++VA
Sbjct: 182 FISQGRVAEKLQNITDALELVFKGARQGNLLREGIQVVLVGQPNVGKSSLMNQLAGEEVA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT I GTTRD +   + +EG  + + DTAG+RET+D VEK+GI RT+  +ENA+  LLL
Sbjct: 242 IVTPIAGTTRDTIKNVVQIEGVPLHLIDTAGLRETEDEVEKQGIARTWRALENANAALLL 301

Query: 306 KE-----INSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLE 352
            +       ++K I    P N+  I++  K DL+S    + +H       IS+  G GL+
Sbjct: 302 VDAAHGITETEKSILERLPANLPKIWVHNKIDLHSEQPRQREHEGELHLYISAKLGLGLD 361

Query: 353 ELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            L   +  I    ++    SI  +  RHL  L     +L+ A++  +    +++AE LRL
Sbjct: 362 ALKAHLLKIAG--WQPAGESIFMARTRHLQALQMVQGHLQNAAVYLEQP--ELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +L  ITG    + LL  IFS+FCIGK
Sbjct: 418 AQHALSSITGEFTPDDLLGEIFSRFCIGK 446


>gi|311085766|gb|ADP65848.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 453

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 250/459 (54%), Gaps = 34/459 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A  T    SA+ I+R+SG    ++       K P  R A+   F   +  ILDKG+
Sbjct: 5   ETIVAQVTCPGKSAVGILRISGFQT-KIVAIKILGKIPLARFATYSNFLDENNEILDKGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P S TGED  E   HG   +++ ++  +  + N+R+A PGEFS RAF NGK+DL
Sbjct: 64  SLWFPAPHSLTGEDVLELQGHGSPLIMDLLIRRILSINNIRMAKPGEFSERAFLNGKMDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182
           ++AES+ DLI+SETE+  R S+  + G+ S    + ++ +   R  IE+++DFSEEE   
Sbjct: 124 IQAESIDDLINSETELSARASLNSLQGKFSFFIKELMNLIIEFRINIESNIDFSEEEINI 183

Query: 183 ---DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
              D+ N   +E+ +  L LK  +         G ++R G KIVI G  N+GKSSL N L
Sbjct: 184 NMQDIINIKFRELHDKFLKLKATVLK-------GSLLREGKKIVIAGLPNSGKSSLLNIL 236

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           +  D AIVTDIPGTTRD+L  D+ + G   ++ DTAG+R+TDD VE+ GI R +  +  +
Sbjct: 237 SYSDRAIVTDIPGTTRDLLYEDISINGVRCELIDTAGLRDTDDKVERIGIMRAWEMIRKS 296

Query: 300 DLILLL--KEINSKKEIS----FPKNI-----DFIFIGTKSDLYSTY--TEEYDHL---- 342
           D +L +  K ++  K+      F +NI        F+  K+DL       +E D      
Sbjct: 297 DHVLFVIDKTLSKSKQKKICDDFMRNILNNKTQVTFVLNKNDLIKDEFGIKEIDGTAFIS 356

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCG 401
           IS+ TGEG+  L   I  I  N   +  F   + +RH+  L      +L   +   +   
Sbjct: 357 ISARTGEGVNILREHIIKIEKNINNESVF--IARRRHIKQLDLAYDEFLTAENTWRESEN 414

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++++AE+L + S  LG+I G    E LL+ IFS FCIGK
Sbjct: 415 IELLAESLSIISKFLGEIIGQCTSEDLLNHIFSSFCIGK 453


>gi|260942413|ref|XP_002615505.1| hypothetical protein CLUG_04387 [Clavispora lusitaniae ATCC 42720]
 gi|238850795|gb|EEQ40259.1| hypothetical protein CLUG_04387 [Clavispora lusitaniae ATCC 42720]
          Length = 492

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 163/471 (34%), Positives = 259/471 (54%), Gaps = 42/471 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FPRKASLRYFFGLDGRILDKGL 65
           TIFA+ST    +AI +IR+SGP    V   + K KKP  P++ S+R  FG +G +LD+ L
Sbjct: 27  TIFALSTRPGRAAIGVIRVSGPKAQYVYHQLTKSKKPPLPQRTSVRRIFGSNG-MLDEAL 85

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGIL---EELAKMPN---LRLANPGEFSRRAFE 119
            + F  P+++TGED  E HVHGG A++  +L   +EL    N   +R+A  GEFSRRAF 
Sbjct: 86  TVFFRGPKTYTGEDLLELHVHGGNAIIKAVLGAIQELHDPENGTEIRMAQQGEFSRRAFM 145

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           +G++DL E E + ++I ++TE QR  ++  ++GE   ++ +W +++    + +   +DF 
Sbjct: 146 SGRLDLTEIEGIREMIDADTESQRLSALASLTGENKQVFARWREEIVRNMALLTTVIDFG 205

Query: 180 EEEDVQN----FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           EE D++     FS+ E   D L    +I S++ + +  +I+  G K+ +LG  NAGKSSL
Sbjct: 206 EEHDLEETKELFSTVEKSIDSLI--TEIESYLRKVRGSDILLRGIKVCLLGPPNAGKSSL 263

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKRTF 293
            N LA  D AIV+ I GTTRD+L + LD+ G+ V + D+AGIR  E  D +E+EGI+R  
Sbjct: 264 LNYLANNDTAIVSHIAGTTRDILDVPLDIGGFKVVVGDSAGIRSLEKADTIEQEGIRRAK 323

Query: 294 LEVENADLILLLKEINSKKEISFPKNIDF--------IFIGTKSDLY-----STYTE--- 337
                 D+++ +  +N        +++D         + +  K+DL      + +T+   
Sbjct: 324 QRSLVGDVVVAVLPVNEPLSPDLKEHMDLLRKEQKPTVVVLNKADLVEKVDKTAFTQALQ 383

Query: 338 ---EYDHLISSFTGEGLEELINKIKS---ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
              E  H++S   G+G++ L   + +   + S      P  I +  + L  L   V Y  
Sbjct: 384 VKPENVHVVSCLNGQGMDSLREALVAHFKVASMSETSDPVVISARAQDL--LEHDVLYGL 441

Query: 392 MASLNEKDCGLDIIAEN-LRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440
                 KD    ++AE  LR +   +GKITG  V VE++L ++FS FCIGK
Sbjct: 442 KQFKVWKDSEDVVLAEECLRQSVEGIGKITGDAVGVEEILGVVFSSFCIGK 492


>gi|107024092|ref|YP_622419.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia AU 1054]
 gi|116691178|ref|YP_836801.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia HI2424]
 gi|123371157|sp|Q1BSF9|MNME_BURCA RecName: Full=tRNA modification GTPase mnmE
 gi|205829125|sp|A0KBN1|MNME_BURCH RecName: Full=tRNA modification GTPase mnmE
 gi|105894281|gb|ABF77446.1| tRNA modification GTPase trmE [Burkholderia cenocepacia AU 1054]
 gi|116649267|gb|ABK09908.1| tRNA modification GTPase trmE [Burkholderia cenocepacia HI2424]
          Length = 464

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 159/466 (34%), Positives = 247/466 (53%), Gaps = 35/466 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T A    I ++R+S       +   + + +C +K   PR AS   F    G
Sbjct: 5   DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQKLA-PRHASYVPFLDAHG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 64  APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302

Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYST------YTEEYD 340
           +E AD++L L  ++S+  ++         FP  +  + +  K+DL            E D
Sbjct: 303 IERADVVLHL--LDSRTGMTADDETIAARFPAGVPVVRVLNKTDLTGVPACVEHPAAEGD 360

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
               HL S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+  
Sbjct: 361 LTEVHL-SAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAANH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|170734511|ref|YP_001766458.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia MC0-3]
 gi|205829124|sp|B1K0Y2|MNME_BURCC RecName: Full=tRNA modification GTPase mnmE
 gi|169817753|gb|ACA92336.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia MC0-3]
          Length = 464

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 159/466 (34%), Positives = 247/466 (53%), Gaps = 35/466 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T A    I ++R+S       +   + + +C +K   PR AS   F    G
Sbjct: 5   DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQKLA-PRHASYVPFLDAHG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 64  APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302

Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYST------YTEEYD 340
           +E AD++L L  ++S+  ++         FP  +  + +  K+DL            E D
Sbjct: 303 IERADVVLHL--LDSRTGMTPDDETIAARFPAGVPVVRVLNKTDLTGVPACVEHPAAEGD 360

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
               HL S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+  
Sbjct: 361 LTEVHL-SAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAADH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|206558831|ref|YP_002229591.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia J2315]
 gi|198034868|emb|CAR50740.1| putative tRNA modification GTPase [Burkholderia cenocepacia J2315]
          Length = 464

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 159/466 (34%), Positives = 247/466 (53%), Gaps = 35/466 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T A    I ++R+S       +   + + +C +K   PR AS   F    G
Sbjct: 5   DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQKLA-PRHASYVPFLDAHG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 64  APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302

Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYST------YTEEYD 340
           +E AD++L L  ++S+  ++         FP  +  + +  K+DL            E D
Sbjct: 303 IERADVVLHL--LDSRTGMTADDETIAARFPAGVPVVRVLNKTDLTGVPACVEHPAAEGD 360

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
               HL S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+  
Sbjct: 361 LTEVHL-SAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAADH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|190171332|gb|ACE63736.1| ThdF [Cronobacter sakazakii]
          Length = 439

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 157/439 (35%), Positives = 242/439 (55%), Gaps = 31/439 (7%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG     V + +  K  P  R A    F   +G  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDANGTALDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTT
Sbjct: 187 EVI---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 243

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + 
Sbjct: 244 RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDA 302

Query: 315 SFPKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELIN 356
           + P  I  DFI           +  K+D+       +E   H    +S+ T EG++ L N
Sbjct: 303 TDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVDVLRN 362

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASV 414
            +K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  
Sbjct: 363 HLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQ 420

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 421 ALSEITGEFTSDDLLGRIF 439


>gi|170694075|ref|ZP_02885231.1| tRNA modification GTPase TrmE [Burkholderia graminis C4D1M]
 gi|170141147|gb|EDT09319.1| tRNA modification GTPase TrmE [Burkholderia graminis C4D1M]
          Length = 464

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 247/465 (53%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G +  Q        +   PR AS   F   
Sbjct: 2   LTTDSDPIVAIATAPGRGGIGVVRISFGRAGDAAAQPLMQALTGQALAPRHASYVPFLDD 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEF 113
           +G  LD+G+ + FP+P S+TGE   E   HGG  V+   L+   +  +   LRLA PGEF
Sbjct: 62  NGNPLDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLALQRCIDAGRAFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++++  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEEVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF EEE +    + +    +  ++  ++S +++ + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPEEE-IDFLEAADARGKLARIRERLASVLAEARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R+T+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYS--TYTEEYDH--- 341
            E+E AD++L L +    + ++ E     FP  +  + +  K+DL     +T   D    
Sbjct: 301 SEIERADVVLHLLDARTGMTAEDETIAKRFPSGVPVVRVLNKTDLVGLPPHTRALDADLE 360

Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--L 395
                +S+  G+G+  L +++  I   +       + + +RHL  L     +L  A+   
Sbjct: 361 LSEVRLSAKQGDGVSLLRDELLRIAGWQAGAESVYL-ARERHLIALRAAQEHLATAAAHA 419

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464


>gi|253997708|ref|YP_003049772.1| tRNA modification GTPase TrmE [Methylotenera mobilis JLW8]
 gi|253984387|gb|ACT49245.1| tRNA modification GTPase TrmE [Methylotenera mobilis JLW8]
          Length = 449

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 234/434 (53%), Gaps = 19/434 (4%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           I ++R+SGP   Q          P PR A+   F   DG ++D+G+ I +P+P S+TGED
Sbjct: 22  IGVVRVSGP-LSQTIAVSVLGHCPKPRHAAYLDFLQADGDLIDRGIAIFYPNPHSYTGED 80

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG A++  +L     +   R A PGEF+RRA+ N K+DL +AE++AD+I++ T
Sbjct: 81  VLELQGHGGTALMQILLARCIAL-GARQAEPGEFTRRAYLNDKMDLAQAEAVADVINAAT 139

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
               + ++  +SGE S      + KL  +R ++EA LDF EEE +   +   V + +  +
Sbjct: 140 IEAAKSAVRSLSGEFSQRINTLLSKLIDLRMYVEACLDFPEEE-IDFITQGRVADKLDAI 198

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             ++ +   + K G ++R G  +V++G  N GKSSL N LA ++VAIVT I GTTRD + 
Sbjct: 199 IAEMQAVFVKAKQGSLLREGINVVLVGQPNVGKSSLMNQLAGEEVAIVTAIAGTTRDTIK 258

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKK 312
             + + G  + + DTAG+RETDD VEK GI RT+   E A + LLL        E+    
Sbjct: 259 NAIQINGVPLHVIDTAGLRETDDEVEKFGIARTWRATETAHIALLLVDATHGITEVEKSI 318

Query: 313 EISFPKNIDFIFIGTKSDLYS--TYTEEYDH----LISSFTGEGLEELINKIKSILSNKF 366
               P+ I  +++  K D+        E DH     IS+ TG G++ L + +   L+   
Sbjct: 319 LARLPQKIPKVWVHNKIDVTQEPALITEQDHAIHIYISAKTGVGVDLLKHHLLQ-LAGYQ 377

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
                   +  RHL  L++   +L++A+        +++AE LRLA  +L  ITG    +
Sbjct: 378 NNAEGVFMARARHLSALTEVAAHLDLAASQINSA--ELVAEELRLAQEALSSITGEFTPD 435

Query: 427 QLLDIIFSKFCIGK 440
            LL  IFSKFCIGK
Sbjct: 436 DLLGEIFSKFCIGK 449


>gi|90194126|gb|ABD92624.1| ThdF [Haemophilus parasuis]
          Length = 436

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 160/440 (36%), Positives = 242/440 (55%), Gaps = 37/440 (8%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           I I+R+SGP   +V + +  K  P PR A    F   DG +LD+G+ + F +P SFTGED
Sbjct: 8   IGILRVSGPIATEVAQAVLGKC-PKPRIADYLPFKDEDGTVLDQGIALFFKAPHSFTGED 66

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L  + K+  +R+A  GEFS +AF N K+DL +AE++ADLI + +
Sbjct: 67  VLELQGHGGQVILDLLLNRILKVKGVRIARAGEFSEQAFLNNKLDLAQAEAIADLIDATS 126

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R +++ + GE S+   + +D + ++R+++EA +DF +EE +   +  ++   LN+I
Sbjct: 127 EQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLNEI 185

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    ++     QG    I+R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 186 IAQLANVRQEAKQGT---ILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTDIAGTTRD 242

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           VL   + ++G  + I DTAG+RE  D VEK GIKR + E+E AD +LL+ + N  +  SF
Sbjct: 243 VLREHIHIDGMPLHIIDTAGLREASDEVEKIGIKRAWDEIEQADHVLLMIDSNESQADSF 302

Query: 317 -----------PKNIDFIFIGTKSDLYSTYTEEYDHLI----------SSFTGEGLEELI 355
                      PKNI    I  K DL    T E + L+          S+ T  G++ L 
Sbjct: 303 QQEWATFLAKLPKNIPVTVIRNKVDL----TGEAESLVQADNFTVIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLAS 413
             +K  +  +         + +RHL  L     +LE     L +   G +++AE LR+  
Sbjct: 359 EHLKKSMGYQ-SSTEGGFIARRRHLVALETAAEHLERGHIQLTQFYAG-ELLAEELRMVQ 416

Query: 414 VSLGKITGCVDVEQLLDIIF 433
            +L +ITG    + LL  IF
Sbjct: 417 NALSEITGQFTSDDLLGNIF 436


>gi|190171312|gb|ACE63726.1| ThdF [Cronobacter sakazakii]
          Length = 439

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 157/439 (35%), Positives = 241/439 (54%), Gaps = 31/439 (7%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTT
Sbjct: 187 EVI---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 243

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + 
Sbjct: 244 RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDA 302

Query: 315 SFPKNI--DFI----------FIGTKSDLYSTYT---EEYDH---LISSFTGEGLEELIN 356
           + P  I  DFI           +  K+D+        E   H    +S+ T EG++ L N
Sbjct: 303 TDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGIIEVNGHSLIRLSARTNEGVDVLRN 362

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASV 414
            +K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  
Sbjct: 363 HLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQ 420

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 421 ALSEITGEFTSDDLLGRIF 439


>gi|225848361|ref|YP_002728524.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644654|gb|ACN99704.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 447

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 170/456 (37%), Positives = 257/456 (56%), Gaps = 29/456 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDGRILD 62
           +K+TI A +T  +PSA+ I+R+SG    ++ + I    +    RKA       LDG +LD
Sbjct: 2   KKDTIVANATPLIPSAVGIVRISGEDALKIGKQIFTLPQEIQERKAYFGKILDLDGSVLD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +GL I F +P+SFTGED  E + HG + V+  I+E +  +   RLANPGEF+ RAF NGK
Sbjct: 62  EGLFIYFKAPKSFTGEDVVEIYPHGSVPVIKKIIENVITLGG-RLANPGEFTYRAFLNGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AE++ADLIS++TE   + ++  + G+LS       + L ++ S IEA+++F E  
Sbjct: 121 IDLTQAEAIADLISAKTEKASKAAVRLLEGKLSEKINSLRETLLNLISLIEAEINFPE-- 178

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV+   S+ ++ ++L +K  I   +   K G +I+ G K+ I+G  N GKSSLFNA+   
Sbjct: 179 DVEEIDSQLIVENLLKVKKSIDKLVGSYKKGSLIKEGIKLAIVGRPNVGKSSLFNAMVGY 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + +IV+   GTTRD +   L ++   + + DTAGIRET + VEK GI+R+  ++E AD+I
Sbjct: 239 ERSIVSSYQGTTRDFIEETLKIKDIPIILLDTAGIRETAEYVEKLGIERSKQKIEEADII 298

Query: 303 LLLKEINS------KKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI--SSFTGEGL 351
           L + + +       KK     KN   I +  K+DL +      E+ D++I  SS T +G+
Sbjct: 299 LFVIDGSQGFTDEDKKIYDEIKNKIHIIVINKADLITKPLDIFEKSDNIIYTSSVTFQGI 358

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN--- 408
           ++L  KI  IL     +    I  + RH   L Q +  +E    N     +D + EN   
Sbjct: 359 KDLEEKIIEILG--ITETEDEIIINLRHYTLLKQAIEKIEKVVEN-----IDFLIENKEI 411

Query: 409 --LRLASV--SLGKITGCVDVEQLLDIIFSKFCIGK 440
             L L  V   L +I G +  E +L  IFSKFCIGK
Sbjct: 412 LMLDLQEVLNYLEEIVGHITTEDVLGNIFSKFCIGK 447


>gi|145590262|ref|YP_001156859.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|205415793|sp|A4T0N1|MNME_POLSQ RecName: Full=tRNA modification GTPase mnmE
 gi|145048668|gb|ABP35295.1| tRNA modification GTPase trmE [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 457

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 165/463 (35%), Positives = 257/463 (55%), Gaps = 29/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   K  I AV+T    + + ++R+SG    ++ E +  +    PR+A+L  F   D + 
Sbjct: 1   MMTRKVPIIAVATAPGKAGVGVVRISGQGLGELVETLFHRSLA-PRQATLLTFCDADNQP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRA 117
           +D+ L I F  P SFTGED  E   HGG  ++  +++   EL K   L +A PGEF+ RA
Sbjct: 60  IDQLLAIYFVGPASFTGEDVLELQCHGGPQLLELVMKRCLELGKALGLVIAEPGEFTLRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           + N K+DL +AE++ADLI +++E   R +   + G  S      I+++T +R  +E+ LD
Sbjct: 120 YLNNKVDLAQAEAIADLIDAQSEAAVRGAARSLQGSFSEDINGLIEEITQLRILVESTLD 179

Query: 178 FSEEED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           F EEE   ++N  ++E L  +   K  + +  +  K G+I+R+G ++V+ G  N GKSSL
Sbjct: 180 FPEEEIEFLENAQARERLAAV---KKKLEALQAGAKQGKILRDGIQLVLAGAPNVGKSSL 236

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N LA ++VAIVT I GTTRD +   + +EG  + I DTAG+R+T D VE +GI+RT+  
Sbjct: 237 LNRLAGEEVAIVTPIAGTTRDRVKESIQIEGVPMHIIDTAGLRKTVDEVEAKGIERTWEA 296

Query: 296 VENADLILLLKEINS-------KKEI--SFPKNIDFIFIGTKSDL------YSTYTEEYD 340
           +  ADL++ L   N+       ++EI  + P     + +  KSDL       S+  E   
Sbjct: 297 IRLADLVIFLGAPNAEPGHESLREEILGALPAKCPILDVINKSDLIEGGLAVSSSNEASP 356

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL---EMASLNE 397
            LIS+ TG G++ L  KI  ++     +   +I S +RHL  L +   ++   E  + N 
Sbjct: 357 LLISAKTGAGIDALKQKILHVVGWNGAQ-EGAIVSRRRHLDCLERAAEHIAKSEQFAANG 415

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  L++ AE L LA   LG+ITG +  + LL  IFS+FCIGK
Sbjct: 416 NNS-LELFAEELFLAQNHLGQITGKLLPDDLLGKIFSQFCIGK 457


>gi|239613201|gb|EEQ90188.1| mitochondrial GTPase [Ajellomyces dermatitidis ER-3]
          Length = 608

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 178/553 (32%), Positives = 273/553 (49%), Gaps = 114/553 (20%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           ++    TI+A+ST    +AI+I+R+SGP+C Q+   +C K   P PR A+LR  F     
Sbjct: 57  LDEPSPTIYALSTAPGRAAIAIVRISGPACVQIYNALCPKSPLPEPRVAALRTLFDPSVP 116

Query: 58  ---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP----------- 103
                ILD+ +++ FP+P++ TGED  E H+HGG AVV  +L  + +             
Sbjct: 117 PSVNSILDRAVVLHFPAPKTVTGEDVLELHIHGGPAVVKAVLNAIPRCAESASSDKFAPS 176

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
           ++R A PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G +  L+  Y +W  
Sbjct: 177 SIRYAEPGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAIRGTNDSLAVRYERWRQ 236

Query: 164 KLTHIRSFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
           +L + R  +EA +DFSE+    E  + F S  +  +   L   I+ HI     GE++RNG
Sbjct: 237 QLLYTRGEMEALIDFSEDQHFDESTEEFVSS-ITGETRNLVRQINMHIENASKGELLRNG 295

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ +LG  NAGKSSL N +  ++ AIV+   GTTRD++ + +DL GY  K  D AG+R 
Sbjct: 296 IKVALLGAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGYFCKFGDMAGLRS 355

Query: 280 TD---------DIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF---PKNID--- 321
                        VE+EGI+R       +D++++   L+E +S + +     P+ ID   
Sbjct: 356 GHIAQAGQMPIGAVEQEGIRRAKARALESDVVIVVLSLEEGDSGRGVKLVLEPEVIDAVQ 415

Query: 322 --------FIFIGTKSDLYSTYTE---EYDHLISSFTGE--------------------- 349
                    I    K D Y+  T        L++S  GE                     
Sbjct: 416 SCIALEKHMIVAVNKFDKYTPATNTDGTAQGLVNSLAGEITSLVPHIVQDQIFLISCREA 475

Query: 350 ---------------GLEELINKIKSILS--------NKFKKLPFSIP---SHK------ 377
                           L+ELI   K + +        +KF KL +      +H+      
Sbjct: 476 ENEQSETADPGNIQTLLKELIRTFKRMSTPSELENGNDKFDKLYWEDSLGVTHRQSSNLQ 535

Query: 378 ---RHLYH-LSQTVRYLEMASLNEK-DCGLDII--AENLRLASVSLGKITG---CVDVEQ 427
              +HL   LSQT +  + A   E+ +  +DI+  AE+LR A+  L KITG     DVE 
Sbjct: 536 KCVQHLNDFLSQTCQTPDNAGNAEQIELNIDIVTAAEHLRFAADCLAKITGRGESGDVED 595

Query: 428 LLDIIFSKFCIGK 440
           +L ++F KFC+GK
Sbjct: 596 VLGVVFEKFCVGK 608


>gi|329894824|ref|ZP_08270624.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma
           proteobacterium IMCC3088]
 gi|328922718|gb|EGG30052.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma
           proteobacterium IMCC3088]
          Length = 460

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 160/457 (35%), Positives = 241/457 (52%), Gaps = 24/457 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A++T      +  IR+SGP    + + +       PR A    F   DG ++D 
Sbjct: 8   DTDTICAIATPPGRGGVGGIRISGPRALAIAKQLSSITNIAPRTAHFSSFKTPDGELVDT 67

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ F +P SFTGED  E   HG   V+N +L E+  +   RLA PGEFS+RAF N K+
Sbjct: 68  GLLLFFATPRSFTGEDVVELQTHGSPIVLNRLLAEICGLGG-RLAEPGEFSKRAFLNNKL 126

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE+++DLI++ TE   + +   + G  SS     + K+  +R  +EA +DF EEE 
Sbjct: 127 DLVQAEAISDLINANTETAAKNAQNSLQGAFSSHVNGLLAKIIGLRVLVEAAIDFPEEE- 185

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  +V   +  +  +    ++Q   G+II+ G  + ++G  NAGKSSL N L   D
Sbjct: 186 VDFISELDVQTQLNTIITETELTLNQANQGQIIQEGLTVALVGAPNAGKSSLLNQLCGLD 245

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDIPGTTRD L   ++++G  V   DTAG+R TDD++E+ GI+R    +E A L+L
Sbjct: 246 KAIVTDIPGTTRDTLETVVNIKGVPVTFIDTAGLRLTDDVIEQAGIQRAVNTLERAQLVL 305

Query: 304 LLKEINSKKEIS------FPKNI-------DFIFIGTKSDLYS---TYTEEYDHLISSFT 347
            L + ++  E S       P N+        FI +  K DL        +E    +S   
Sbjct: 306 FLMDASATSEQSVSLFTLLPSNLAEACLAHPFIGVSNKIDLLDGPIPQIQEATTNVSIAA 365

Query: 348 GEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
             GL   I  +K  + +     P S     + +RH+  L  T+  L+   +  ++    +
Sbjct: 366 KMGLN--IEGLKQAIIDAVGLHPESEHLFSARQRHISALQSTLSALKNGFVQLQEHAASE 423

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+LRLA  ++  ITG    + LL  IFS FCIGK
Sbjct: 424 LLAEDLRLAQQAINSITGEFTNDDLLGEIFSSFCIGK 460


>gi|119900277|ref|YP_935490.1| tRNA modification GTPase TrmE [Azoarcus sp. BH72]
 gi|205829056|sp|A1KCP8|MNME_AZOSB RecName: Full=tRNA modification GTPase mnmE
 gi|119672690|emb|CAL96604.1| probable tRNA modification GTPase [Azoarcus sp. BH72]
          Length = 452

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 159/449 (35%), Positives = 245/449 (54%), Gaps = 20/449 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           E I A++T      I ++R+SG       + +C ++ P PR A+L  F   DG  +D+G+
Sbjct: 10  EAIAAIATAPGRGGIGVVRVSGAGLTGFAQQLCGRE-PQPRLATLARFRDADGATIDEGI 68

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+ FP+P SFTGED  E   HGG  V+  +L     +   RLA PGEF+RRAF NGK+DL
Sbjct: 69  LLYFPAPASFTGEDVLELQGHGGPVVMQMLLARCLAL-GARLAEPGEFTRRAFLNGKLDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + T    R ++  +SG+ S    +  D L  +R  +EA +DF EEE V+
Sbjct: 128 AQAEAVADLIEASTAAAARSALRSLSGQFSEEVLRIRDALIDLRMLVEATIDFPEEE-VE 186

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                  L  +  ++  + + + + + G ++R G  +V++G  N GKSSL N LA +D A
Sbjct: 187 FLDKGRALPRLAAIRTQLDALLDRARQGALLRTGMNVVLVGRPNVGKSSLLNQLAGEDRA 246

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTD+ GTTRD L   + +EG  + + DTAG+R+T D+VE+ GI+RT+ EVE AD++L +
Sbjct: 247 IVTDVAGTTRDALREAIQIEGIPLHVIDTAGLRQTSDVVERIGIERTWREVERADVVLRV 306

Query: 306 KEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGL 351
            +    +E +         P     I +  K DL     E  +        +S+ +G+G+
Sbjct: 307 IDSEGAEEDALEAELAARCPSAAARITVVNKIDLLGLAPERTETAGAVRLRLSARSGDGV 366

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           + L  ++    +         + + +RHL  L + + +L  A        L++ AE LRL
Sbjct: 367 DLLRTELLRA-AGWHAHGEDVVLARERHLLALREALDHLAAAEAAASA--LELFAEELRL 423

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +L  ITG    + LL  IFS+FCIGK
Sbjct: 424 AQEALAGITGEFSADDLLGEIFSRFCIGK 452


>gi|189218144|ref|YP_001938786.1| tRNA modification GTPase, TrmE [Methylacidiphilum infernorum V4]
 gi|189185002|gb|ACD82187.1| tRNA modification GTPase, TrmE [Methylacidiphilum infernorum V4]
          Length = 441

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 169/449 (37%), Positives = 246/449 (54%), Gaps = 22/449 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLR-YFFGLDGRILD 62
           ++TI A +T    SAI++IR+SGP   ++   + +K  K  P++   R  +FG +  +LD
Sbjct: 2   EDTIVAPATPPALSAIALIRMSGPKSLEIISSLLRKSFKGDPQRLYYRKLYFGEE--LLD 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
             +L  + SP S+TGED  E   HG   +V  ILE   K    RLA+PGEF++RAF NGK
Sbjct: 60  DVVLSYWKSPRSYTGEDMIEISCHGNPYIVERILEACLKK-GARLASPGEFTKRAFLNGK 118

Query: 123 IDLLEAESLADLISS----ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           +DL +AE++ DLI +      +  + L   G+S EL  +  + ID L  + ++I    DF
Sbjct: 119 MDLTQAEAIIDLIHAGGMLALKSAQALQSGGLSKELLRIRAELIDILAEVEAYI----DF 174

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            EE D+Q     +++  +L ++N +S+ +S   L  ++R G  IV+ G  N GKSSLFNA
Sbjct: 175 PEE-DIQPEVGDQLIGRLLAMENKLSTLLSSAPLSRVLREGLTIVLAGSPNVGKSSLFNA 233

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L K++ AIV+  PGTTRD +  +  +  +LVKI DTAG R  DD +E EGI+R    V+ 
Sbjct: 234 LLKENRAIVSPHPGTTRDTIEAECRISSFLVKIVDTAGQRVADDQIEAEGIRRAQEAVKR 293

Query: 299 ADLILLL---KEINSKKEISFPK---NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
            DLIL L    +  S      P+       I I +K+DL      +  H +S  TG GLE
Sbjct: 294 GDLILHLVSAPDDPSTDPYVLPQLQAQQKVIAIASKADLGIHPANKDKHALSIVTGMGLE 353

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
           EL  KIK +L + F  + FS   + R    L++    L  A L  K+    ++I+  L  
Sbjct: 354 ELEEKIKKLLES-FFPMDFSYGVNPRQQAALAKMAEALNKAILGIKNSLPPELISSELHE 412

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +G+I G V  E +LD IF KFCIGK
Sbjct: 413 CLERVGEIVGLVSSEDILDKIFQKFCIGK 441


>gi|254246829|ref|ZP_04940150.1| hypothetical protein BCPG_01599 [Burkholderia cenocepacia PC184]
 gi|124871605|gb|EAY63321.1| hypothetical protein BCPG_01599 [Burkholderia cenocepacia PC184]
          Length = 464

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 159/466 (34%), Positives = 247/466 (53%), Gaps = 35/466 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T A    I ++R+S       +   + + +C +K   PR AS   F    G
Sbjct: 5   DSDPIVAIATAAGRGGIGVVRVSFGRGGEATALPLIDALCGQKLA-PRHASYVPFLDAHG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 64  APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302

Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYST------YTEEYD 340
           +E AD++L L  ++S+  ++         FP  +  + +  K+DL            E D
Sbjct: 303 IERADVVLHL--LDSRTGMTADDETIAARFPAGVPVVRVLNKTDLTGVPACVEHPAAEGD 360

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
               HL S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+  
Sbjct: 361 LTEVHL-SAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQDHLAQAADH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|190171314|gb|ACE63727.1| ThdF [Cronobacter sakazakii]
          Length = 439

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 157/439 (35%), Positives = 241/439 (54%), Gaps = 31/439 (7%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTG
Sbjct: 9   GGVGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTG 67

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 68  EDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN
Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLN 186

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +++    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTT
Sbjct: 187 EVI---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 243

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + 
Sbjct: 244 RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDA 302

Query: 315 SFPKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELIN 356
           + P  I  DFI           +  K+D+       +E   H    +S+ T EG+  L N
Sbjct: 303 TDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVGVLRN 362

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASV 414
            +K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  
Sbjct: 363 HLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQ 420

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 421 ALSEITGEFTSDDLLGRIF 439


>gi|159902748|ref|YP_001550092.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9211]
 gi|159887924|gb|ABX08138.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus str. MIT 9211]
          Length = 455

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 157/465 (33%), Positives = 257/465 (55%), Gaps = 46/465 (9%)

Query: 5   KETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFG---- 55
           +ETI A+++   P    +++IR+SG S  + C+ I       P     +S R  +G    
Sbjct: 8   EETIAAIASAVSPGQGGVAVIRISGRSAQETCKQIVH----IPGDQIWSSHRIVYGHVIE 63

Query: 56  -LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               + +D+ L+++  +P SFTGED  E H HGG+  V  IL ++ + P++R A PGEFS
Sbjct: 64  KKTQKHIDEVLILIMEAPRSFTGEDVVEIHCHGGLISVQRILNQILEQPDVRRALPGEFS 123

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RA  NG++DL++AE++ DLIS++++    L+M G+ G+++       DKL    S IEA
Sbjct: 124 QRAVLNGRLDLIQAEAINDLISAKSQKAAELAMAGVDGDITQRINSLRDKLLDQLSEIEA 183

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF  E+D+   + + +L D++ + N++   +   K G I RNG KI ++G  N GKSS
Sbjct: 184 RIDF--EDDLPPLNKQALLADLIKINNELQQLVIDAKQGCIFRNGLKIALIGLPNVGKSS 241

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           + N L+K++ AIVT +PGTTRD+L  ++ LEG  + + DTAGIR T+D VEK G+ ++  
Sbjct: 242 VLNRLSKRERAIVTALPGTTRDLLESEIILEGIPITLLDTAGIRSTNDEVEKIGVAKSKN 301

Query: 295 EVENADLILLLKEIN-----SKKEI--SFPKNIDFIFIGTKSDL-YSTYTEEYDHLISSF 346
            +  AD++L + +++     + +++    PK +  + IG K+D+     T + + + S+ 
Sbjct: 302 ALMTADIVLFIFDMSIGWTTADQDLFDQIPKQMPTLLIGNKADIKVQQDTNQAEIIFSAL 361

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG----- 401
           TG+G   LI  +  I              H+ H   ++   R L++ +   K  G     
Sbjct: 362 TGQGENNLIQALLKICG-----------LHETHGIEIALNERQLDLVNAASKALGKTLEV 410

Query: 402 ------LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                  D    +LR A   LG++TG    E LLD IFS+FCIGK
Sbjct: 411 TTQELPWDFWTIDLRDAIQKLGELTGHEISEALLDRIFSRFCIGK 455


>gi|161702952|ref|YP_370756.2| tRNA modification GTPase TrmE [Burkholderia sp. 383]
 gi|205829162|sp|Q39BQ4|MNME_BURS3 RecName: Full=tRNA modification GTPase mnmE
          Length = 464

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 159/466 (34%), Positives = 247/466 (53%), Gaps = 35/466 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T A    I ++R+S       +   + + +C +K   PR AS   F    G
Sbjct: 5   DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQKLA-PRHASYVPFLDEHG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 64  APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302

Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYSTY------TEEYD 340
           +E AD++L L  ++S+  ++         FP  +  + +  K+DL            E D
Sbjct: 303 IERADVVLHL--LDSRNGMTADDETIAARFPGGVPVVRVLNKTDLTGVAACVEHPAAEGD 360

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
               HL S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+  
Sbjct: 361 LTEVHL-SAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAADH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|325922757|ref|ZP_08184491.1| tRNA modification GTPase trmE [Xanthomonas gardneri ATCC 19865]
 gi|325546753|gb|EGD17873.1| tRNA modification GTPase trmE [Xanthomonas gardneri ATCC 19865]
          Length = 446

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 151/449 (33%), Positives = 244/449 (54%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    I I+RLSGP   Q+   +       PR A    F    G +
Sbjct: 1   MSSSPSTIVAIASAAGTGGIGIVRLSGPQAAQIAAALGIATLQ-PRHARYARFRDAQGEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + FP+P SFTGED  E   HG   ++  ++     +   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFPAPHSFTGEDVLELQGHGSPVLLRQVVARCIAL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       D LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRSLDGVFSRRVDAVSDSLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  +      +V + +   ++ ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 EP-LDTLGGTQVRDGLTHARSLLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E++ AD
Sbjct: 238 GSERAIVTDVAGTTRDTLQETIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELQRAD 297

Query: 301 LILLLKEINSKKEI--SFPKNIDFI----FIGTKSDLYSTYTE-EYDHL-ISSFTGEGLE 352
           L L++ +    +    +    ID +    +I  K DL     + + D + +S+ TG+GLE
Sbjct: 298 LALIVLDARDPQAARDAIGDAIDVVPRQLWIHNKCDLLVDALKLDSDAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++ + L +  + +     +  RH+  L +  ++ + A L      L++ AE LRL
Sbjct: 358 QLHIRLRELALGDGVESVDGEFSARTRHVEALRRAEQHADAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKLSADELLGKIFSSFCIGK 446


>gi|241950667|ref|XP_002418056.1| GTPase MSS1, mitochondrial precursor [Candida dubliniensis CD36]
 gi|223641395|emb|CAX43355.1| GTPase MSS1, mitochondrial precursor [Candida dubliniensis CD36]
          Length = 536

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 162/488 (33%), Positives = 266/488 (54%), Gaps = 54/488 (11%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59
           N  K T+FA+ST    SAI+++R+SGP S +   +     K P  R AS+R  +    R 
Sbjct: 54  NPLKPTVFALSTKFGKSAIAVVRISGPQSKYIYHKLTNSTKPPKNRIASVRKLYSFGHRC 113

Query: 60  -----ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLA 108
                 LD+ L +  P P+++TGED  E H+HGG++++  +L+ +  + +      +R A
Sbjct: 114 NQKSVFLDEALTLFLPGPKTYTGEDLLELHLHGGVSIIKSVLQSIKNLHDPSNGIMIRQA 173

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
           + GEFS++AF NG++DL E E + D+I++ETE QR  S+   SG+    +  W +++ + 
Sbjct: 174 DRGEFSKQAFYNGRLDLTELEGINDMINAETESQRLASLASSSGQTKIEFMNWRNEIVNQ 233

Query: 169 RSFIEADLDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            + +   +DF E+ D++      ++V  +I  ++ +I +++ + K  +I+ NG ++ +LG
Sbjct: 234 MANLTMIIDFGEDHDIEETDQIIQDVKENIAKIELEIKAYLLKVKSSQILLNGIQLALLG 293

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIV 284
             NAGKSS+ N LA KD AIV++I GTTRD+L I L++ GY V + DTAGIR  E  D +
Sbjct: 294 PPNAGKSSILNILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFEEADSI 353

Query: 285 EKEGIKRTFLEVENADLILL-------------LKE-----INSKKEISFPKNIDFIFIG 326
           E+EGIKR       ADL+++             LKE     +   K+I    N   +F+ 
Sbjct: 354 EQEGIKRAKKRSMLADLVIVVLDPISVEKDPLELKEHLEALVKENKQILIVLNKQDLFVS 413

Query: 327 TKSDLYSTYTE------EYDHLISSFTGEGLEELINKIKSILSNKFKKL-------PFSI 373
              ++ S Y++       Y +++S  TG G++ L    +  L  KFK L       P  +
Sbjct: 414 RSEEMISKYSQVFNLPKNYFYVVSCSTGSGIDNL----QKALIEKFKDLSQSETSDPIIV 469

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDII 432
            S  + +        + E     + D  L + A+ LR +   +GKITG  +D+E++LD++
Sbjct: 470 SSRVQDILENDILFGFKEFYQWADADDVL-LAADCLRQSVDGIGKITGQSIDLEEILDVV 528

Query: 433 FSKFCIGK 440
           FS FCIGK
Sbjct: 529 FSSFCIGK 536


>gi|310817163|ref|YP_003965127.1| tRNA modification GTPase [Ketogulonicigenium vulgare Y25]
 gi|308755898|gb|ADO43827.1| tRNA modification GTPase [Ketogulonicigenium vulgare Y25]
          Length = 425

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 156/444 (35%), Positives = 238/444 (53%), Gaps = 29/444 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T    + +++IRLSGP+     E +     P P              ++D+ L
Sbjct: 2   DTIFALATARGRAGVAVIRLSGPAARTAVEQLAG---PLPVHGRSLRLLREGAEVVDEAL 58

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F    SFTGE   E H+HG  A+V  +L  L    +LR A  GEF+RRA ENG++DL
Sbjct: 59  VLSFDHGRSFTGEVVVELHLHGSPAIVQAVLRILGNNADLRAAEAGEFTRRALENGRLDL 118

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETEMQRR +M    G + +    W  KL    + IEA +DF+ +EDV 
Sbjct: 119 AQVEGLADLIDAETEMQRRQAMRIFQGAMGAKANVWRAKLLRAAALIEATIDFA-DEDVP 177

Query: 186 NFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                EV   L D+L     + + ++   + E +R+G+++ I+G  N GKS+L N LA +
Sbjct: 178 VDVRPEVEGLLVDVLIA---LEAEVAGVSVAERLRDGFEVAIVGRPNVGKSTLLNYLAGR 234

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AI + + GTTRDV+ + +D+ G  V + DTAG+RET D VE+ GI R     E AD+ 
Sbjct: 235 DAAITSHVAGTTRDVIEVRMDIAGLPVTLLDTAGLRETADEVEQIGIARARSRAELADIR 294

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSI 361
           + +   +   E+      D +       L+    E  D + IS  TG G++ L   I+  
Sbjct: 295 VHIVAADELPELPIQPG-DIV-------LHPRGDETGDVNGISGLTGYGVQRLTGHIEQE 346

Query: 362 LSNKFKKLPFSI-PSHKRHLYH----LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           LS +   +  ++   H+  + H    +++ +  L  A   EK    D++AE+LRLA  ++
Sbjct: 347 LSARVASVGVAMRERHRLAMVHAITLMAEVIDLLPDAV--EK---ADLVAEDLRLAIRAI 401

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
             + G +DVE +L  IFS FCIGK
Sbjct: 402 DSLVGRIDVEDILGEIFSSFCIGK 425


>gi|21233655|ref|NP_639572.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770621|ref|YP_245383.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|25009496|sp|Q8P340|MNME_XANCP RecName: Full=tRNA modification GTPase mnmE
 gi|81303432|sp|Q4UNL0|MNME_XANC8 RecName: Full=tRNA modification GTPase mnmE
 gi|21115528|gb|AAM43454.1| thiophene and furan oxidation protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575953|gb|AAY51363.1| thiophene and furan oxidation protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 446

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 152/449 (33%), Positives = 241/449 (53%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN    TI A++T A    I I+RLSGP   Q+   +        R A    F    G +
Sbjct: 1   MNALPSTIVAIATAAGTGGIGIVRLSGPQSVQIAAALGIAGLQ-SRHARYARFRDAQGEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + FP+P SFTGE+  E   HG   ++  ++     +   R A  GEFS RAF N
Sbjct: 60  IDDGIAVWFPAPHSFTGEEVVELQGHGSPVLLRQLVARCIAL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       + LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRSLDGVFSRRVDAVSESLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  +      +V  ++   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 EP-LDTLGGAQVREELTRTRALLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+RE  D +E+EG++R   E++ AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDAIEREGMRRARAELQRAD 297

Query: 301 LILLLKEINSKKEI--SFPKNIDFI----FIGTKSDLYSTYTE-EYDHL-ISSFTGEGLE 352
           L L++ +    +    +    ID +    +I  K DL +     + D + +S+ TG+GLE
Sbjct: 298 LALIVLDARDPQAARDALGDAIDAVPRRLWIHNKCDLLAVAGPMDADAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            L  +++ + L +  + +     +  RH+  L +  ++ + A L  +   L++ AE LRL
Sbjct: 358 HLHTRLRELALGDGIESVDGEFSARTRHVDALHRAEQHADAADLELRYEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446


>gi|325294918|ref|YP_004281432.1| tRNA modification GTPase mnmE [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065366|gb|ADY73373.1| tRNA modification GTPase mnmE [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 463

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 263/462 (56%), Gaps = 30/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-----KKKPFPRKASLRYFFGLDG- 58
           ++TI A+ T     AI I+R+SG    ++ + I +     KK+ F  +  + Y   +D  
Sbjct: 6   EDTIAAIGTPIGKGAIGIVRISGKDSLKILKEIFRTKEGSKKEKFENR-KMHYGLVVDRF 64

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ L +   +P++FTGED  E H HGGI VV  IL E+      RLA PGEFS RA
Sbjct: 65  EEPIDEVLAVYMRAPKTFTGEDIVEIHSHGGIVVVRKILREVLS-KGARLAEPGEFSMRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGKIDL++AE++ +LI++ +E+  +L+++ + G LS+   +  DKL  ++++IEA +D
Sbjct: 124 FINGKIDLVQAEAINELINATSEVGAKLALKQLEGALSNKIKELRDKLLEVKAYIEAAVD 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F +EE ++ F +  +   IL +   I   +S  K G++++ G K+ I+G  N GKSSL N
Sbjct: 184 FPDEE-IEIFETGHIREKILEIVEKIEKLVSTYKDGKVLKEGIKVAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           A+ K++ AIVT+IPGTTRD++   + L+G  +++ DTAGIRE  D VE+ GI+RT   +E
Sbjct: 243 AILKEERAIVTEIPGTTRDIIEETVTLKGIPLRLIDTAGIREAIDKVEQIGIERTMKSLE 302

Query: 298 NADLILLL-------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT--EEYDHL----IS 344
            AD+IL +        E + K      K  + I +  K DL    +  E  D      +S
Sbjct: 303 EADVILFVIDGSIGFTEEDRKISKVLKKKENVILVINKKDLGLKLSCRESIDWKECVELS 362

Query: 345 SFTGEGLEELINKIKSIL---SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           + + EG++EL  KI +++        K    + +++RH   L    + L +  ++  D G
Sbjct: 363 AKSTEGIDELGEKIVNLVLLEPETILKGEEPLLTNERHRELLESAKKSL-LKVIDSLDTG 421

Query: 402 L---DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               + I+ ++  A  SLGKI G V  E +LDIIFSKFCIGK
Sbjct: 422 FESPEFISMDIDEALYSLGKIVGQVTTEDMLDIIFSKFCIGK 463


>gi|119508848|ref|ZP_01628000.1| tRNA modification GTPase [Nodularia spumigena CCY9414]
 gi|119466377|gb|EAW47262.1| tRNA modification GTPase [Nodularia spumigena CCY9414]
          Length = 463

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 162/460 (35%), Positives = 250/460 (54%), Gaps = 32/460 (6%)

Query: 7   TIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG-----LD 57
           TI A++T  +P   ++SI+R+SG     + +  F    ++ +    S R  +G       
Sbjct: 10  TIAAIATAVIPQQGSVSIVRVSGSQAMAIAQALFSAPGQQVWE---SHRILYGHIRHPQT 66

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ RA
Sbjct: 67  QALVDEALLLIMQAPRSYTREDVVEFHCHGGIMAVQQVLQ-LCLEQGARLAQPGEFTLRA 125

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AES+ADL+ + +    + ++ G+ G+L+S   Q       I + IEA +D
Sbjct: 126 FLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLASPIRQLRANCLDILAEIEARID 185

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F  EED+     K +++DI  +  +IS  ++    GE++R G K+ I+G  N GKSSL N
Sbjct: 186 F--EEDLPPLDHKGIISDIDHVAAEISKFLATKDKGELLRTGLKVAIVGRPNVGKSSLLN 243

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           A ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIRET D VEK G++R+     
Sbjct: 244 AWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETVDQVEKIGVERSRRAAN 303

Query: 298 NADLILLLKEIN-----SKKEI-SFPKNIDFIFIGTKSDLYST-------YTEEYDHLIS 344
            ADL+LL  + +     S +EI    ++   I +  K DL  T       Y      +++
Sbjct: 304 AADLVLLTIDASAGWTESDQEIYDQVQHRPLILVINKIDLVETASIDSGKYPHNIHQIVT 363

Query: 345 SFTG--EGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400
           +     +G++ L   I +I+ + K +     +  ++R    L+Q    LE   +   D  
Sbjct: 364 TIAAKNQGIDALETAILNIVQTGKVQAADMDLAINQRQAAALTQAKISLEQVQVTITDQL 423

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 424 PLDFWTIDLRGAIQALGEITGEQVTESVLDRIFSRFCIGK 463


>gi|190171350|gb|ACE63745.1| ThdF [Cronobacter turicensis]
          Length = 439

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 156/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN++
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + + 
Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304

Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358
           P  I  DFI           +  K+D+       +E   H    +S+ T +G++ L N +
Sbjct: 305 PAQIWPDFIARLPAKLPITVVRNKADVTGEQPGLSEVNGHSLIRLSARTSDGVDVLRNHL 364

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416
           K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  +L
Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 423 SEITGEFTSDDLLGRIF 439


>gi|161899035|ref|YP_077161.2| tRNA modification GTPase TrmE [Symbiobacterium thermophilum IAM
           14863]
 gi|205829222|sp|Q67J33|MNME_SYMTH RecName: Full=tRNA modification GTPase mnmE
          Length = 457

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 159/470 (33%), Positives = 251/470 (53%), Gaps = 49/470 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGL--DG 58
           +ETI A++TGA    I I+R+SG    QV E I + ++  P    R  ++ Y + +   G
Sbjct: 3   EETIAAIATGAGEGGIGIVRISGADALQVAERIFRPRRGRPLGCRRSHTVTYGWVVTPGG 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L +V   P S+TGED  E   HGG   V  +LE+ A     RLA PGEF+RRAF
Sbjct: 63  DRIDEALALVMRGPHSYTGEDVVELQCHGGQLAVRRVLEQ-ALQAGARLAEPGEFTRRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ DLI ++T+     ++  + G L    G+  ++L  + + +EAD+DF
Sbjct: 122 LNGRLDLSQAEAVVDLIRAKTDRAMAAAVAHLRGSLRQAIGRIRERLMEMMAHLEADIDF 181

Query: 179 SEEE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
            E E +VQ  + +EV     +   ++   +   + G I+R G + V+ G  N GKSSL N
Sbjct: 182 PELELEVQ--TREEVAAGCAWCLGEVERLLGGARTGRILREGLRAVLAGRPNVGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVT IPGTTRDV+   ++L G  V++ DTAG+R TDD VE+ G+ RT   + 
Sbjct: 240 RLVRENRAIVTPIPGTTRDVIAEWVELGGVPVQLFDTAGLRPTDDPVERIGVARTHEALA 299

Query: 298 NADLILLLKEINS------KKEIS-FPKNIDFIFIGTKSDLYSTYTEEYDHL-------- 342
            A L+L++ +  +      ++ IS  P+    + +  K DL   +  E   L        
Sbjct: 300 QAHLVLVVVDAAAGLGPEDREWISQLPQGAARVGVANKIDLNPAF--ELSALREALGGAP 357

Query: 343 ---ISSFTGEGLEELINKIKSILSNKF---------KKLPFSIPSHKRHLYHLSQTVRYL 390
              +S+ TGEG + L  ++  + +  F          +   +I   + HL     T+   
Sbjct: 358 VVGVSAETGEGFDALEAEVARV-AGAFDASEELLVNARQAEAIRRARNHLRDAQATL--- 413

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 E   G +++A +LR A ++LG++TG    E+LLD IFS+FCIGK
Sbjct: 414 ------ESGLGDELVAIDLRAAWMALGEVTGETAGEELLDQIFSRFCIGK 457


>gi|50294530|ref|XP_449676.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528990|emb|CAG62652.1| unnamed protein product [Candida glabrata]
          Length = 487

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 166/487 (34%), Positives = 264/487 (54%), Gaps = 53/487 (10%)

Query: 1   MNHEKE---TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL 56
           ++H ++   TI+++ T    SA+S+IR+SG     V   + ++   P  R+A LR  +  
Sbjct: 7   LSHTRQRLPTIYSMVTPRAKSAVSVIRVSGDKAQYVYRKLTRRDDVPRSRQACLRGLYNG 66

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANP 110
           D  ++D+ L++ F SP SFTGED  EF VHGG AV   +L  +  + N      +R+A+ 
Sbjct: 67  DNELIDRALVLYFKSPGSFTGEDVVEFQVHGGRAVSESVLSAIGSLNNRDQDVEIRMADR 126

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           GEFSRR+F NGK DL   E +  LI+++TE QRR +M   +G+  +L+ +W D      +
Sbjct: 127 GEFSRRSFLNGKADLTGLEGINTLINADTEAQRRAAMGSFTGKNKALFNRWRDIAIQNSA 186

Query: 171 FIEADLDFSEEEDVQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
            + A +DFSE+ D  +  +    EV  +++ L+ +I + I++     I+ NG  + +LG 
Sbjct: 187 QLTAIIDFSEDSDFADEYTAVMAEVRQELMGLRTEIGNFIARVTKASIVENGINMTLLGA 246

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEK 286
            N GKSSL N +A  D++IV+DIPGTTRD+++  +++ GY V + DTAGIR +T D +EK
Sbjct: 247 PNVGKSSLLNQIASDDISIVSDIPGTTRDIVSSIVNINGYKVNLFDTAGIRVDTTDPIEK 306

Query: 287 EGIKRTFLEVENADLIL---------------LLKEIN-SKKEISFPKN-IDFIFIGTKS 329
            GI++ F  + ++D+ +               LLK  + S  EI F  N ID +    K 
Sbjct: 307 MGIEKAFKRIGSSDICICVIDGTQPLPLNVLDLLKSSDLSGSEIIFVVNKIDIVDDSCKL 366

Query: 330 DLYSTY-----TEEYDHLISSFTGEGLEELINKIKSILSNKFKKL--------PFSIPSH 376
                Y     T      +S     G++EL+    ++L+ KFK L        P  +   
Sbjct: 367 SKIQQYIGNNLTGCKICFVSCLKSTGIDELV----TVLTGKFKTLTQNEENEDPIIVSDR 422

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CVDVEQLLDIIF 433
            + +  L + V Y     L  +D   DI+   E+LR     +GKITG  + +E++LD++F
Sbjct: 423 VKEI--LEKDVLYGIDQFLQIQDDMHDIVIATEHLRYVIDGIGKITGEVIGLEEVLDVVF 480

Query: 434 SKFCIGK 440
           SKFC+GK
Sbjct: 481 SKFCVGK 487


>gi|254496744|ref|ZP_05109603.1| tRNA modification GTPase TrmE [Legionella drancourtii LLAP12]
 gi|254354039|gb|EET12715.1| tRNA modification GTPase TrmE [Legionella drancourtii LLAP12]
          Length = 411

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 238/409 (58%), Gaps = 20/409 (4%)

Query: 45  PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN 104
           PR A+   F+     ++D+GL++ F +P SFTGED  E   HG   V++ + +   ++  
Sbjct: 10  PRLATFCSFYS--DSLIDQGLMLYFKAPHSFTGEDVVEIQAHGSPVVLDMLTKACIEV-G 66

Query: 105 LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK 164
            RLA PGEFS RAF N KIDL +AE++ADLI + ++   R++++ + GE S+   Q  ++
Sbjct: 67  ARLARPGEFSERAFLNDKIDLTQAEAIADLIQASSQTAARMALKSLQGEFSNKINQLNEQ 126

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L ++R ++EA +DF EEE +   +  +V   +  +  ++++   Q   G ++R G  +VI
Sbjct: 127 LIYLRLYVEAAIDFPEEE-IDFLNDGKVATLLKTILAELTAIRLQANQGVLLREGLSLVI 185

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
            G  NAGKS+L N LA +D+AIVT+I GTTRDV+   + L+   + I DTAG+RE+DD+V
Sbjct: 186 AGRPNAGKSTLINNLAGRDIAIVTEIAGTTRDVMREHILLDDIPLHIIDTAGLRESDDVV 245

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK-------KEI--SFPKNIDFIFIGTKSDLYSTY 335
           EKEGIKR + E++ AD +LL+ +IN         KEI  + P ++  I +  K D  +  
Sbjct: 246 EKEGIKRAWQELKKADCVLLVVDINDSEHHHLLTKEIRAALPTDVPIITVFNKIDTVAQA 305

Query: 336 TEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
            +  +H +  S+ +G+G+  L   IK ++  +  +  F   + +RHL  L +    L   
Sbjct: 306 AQVQEHAVYLSAKSGDGINGLKQVIKDVVGYQPNEGQFL--ARRRHLQALDEAKNLLVTG 363

Query: 394 --SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              L     G +++AE+LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 364 QQQLAVHRAG-ELLAEDLRLAQQVLCEITGEFSSDDLLGRIFSSFCIGK 411


>gi|77968732|gb|ABB10112.1| tRNA modification GTPase trmE [Burkholderia sp. 383]
          Length = 489

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 159/466 (34%), Positives = 247/466 (53%), Gaps = 35/466 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T A    I ++R+S       +   + + +C +K   PR AS   F    G
Sbjct: 30  DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQKLA-PRHASYVPFLDEHG 88

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 89  APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTR 148

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +EA 
Sbjct: 149 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLVEAT 208

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 209 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 267

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ E
Sbjct: 268 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 327

Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYSTY------TEEYD 340
           +E AD++L L  ++S+  ++         FP  +  + +  K+DL            E D
Sbjct: 328 IERADVVLHL--LDSRNGMTADDETIAARFPGGVPVVRVLNKTDLTGVAACVEHPAAEGD 385

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
               HL S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+  
Sbjct: 386 LTEVHL-SAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAADH 443

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 444 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 489


>gi|119503567|ref|ZP_01625650.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2080]
 gi|119460629|gb|EAW41721.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2080]
          Length = 437

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 237/445 (53%), Gaps = 19/445 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI AV+T      I I+RLSG    ++   I ++     R A    F     R++D GL
Sbjct: 2   ETIAAVATAPGRGGIGIVRLSGAKALEIALLITQRDSVDNRFAHYAKFTDRHDRVIDDGL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F  P+SFTGED  E   HGG  V+  +L+   ++   R ANPGEFS RAF NG+IDL
Sbjct: 62  VIGFTGPQSFTGEDCVELQGHGGPVVIGLLLQRCLEL-GARHANPGEFSERAFLNGRIDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ADLI++++    R +   +SG  S+   Q +  +T +R F+EA LDF EEE + 
Sbjct: 121 IQAEAIADLIAADSTTAARQAQASISGVFSTSINQIMRDITGLRVFVEAALDFPEEE-ID 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S   V   +  +   ++  I Q K G I++ G  +V+ G  N GKSSL NAL+ +D+A
Sbjct: 180 FISEGNVDQQVDLILEHLARLIRQAKEGAILQGGATLVLAGKPNVGKSSLLNALSGEDIA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + + G   ++ DTAG+R ++D VE EG++R    +  AD++L +
Sbjct: 240 IVTDIAGTTRDVLKQTVVICGVPFELIDTAGLRTSNDPVEIEGVRRAEAAISQADILLEV 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSI 361
            + +S K++S       I +  K DL        D      +S  TGEG++ L   I   
Sbjct: 300 ID-DSSKDVSNSALTSGIKVVNKIDLTDRTPGPIDGGKAVAVSVHTGEGIDALKQLILET 358

Query: 362 LS------NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
           L       N+F      + + +     L++ V+        E      ++AE+L+     
Sbjct: 359 LGITEQTENRFSARERHLRALREGHTSLAEAVQRFLATRAGE------LLAEDLKKTHDI 412

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG ITG +  + LL  IFS FCIGK
Sbjct: 413 LGAITGKLTSDDLLGEIFSSFCIGK 437


>gi|307547060|ref|YP_003899539.1| tRNA modification GTPase TrmE [Halomonas elongata DSM 2581]
 gi|307219084|emb|CBV44354.1| tRNA modification GTPase TrmE [Halomonas elongata DSM 2581]
          Length = 456

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 158/458 (34%), Positives = 250/458 (54%), Gaps = 27/458 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + ++TI A++T      + IIR+SG +   + E +     P PR+A    F G +G +LD
Sbjct: 6   YAQDTIAALATPPGQGGVGIIRVSGSASRSIAESMLGHCPP-PRQAFYGPFRGENG-MLD 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + F  P SFTGED  E   HGG  +++ +LE   ++   RLA PGEFS RAF N K
Sbjct: 64  EGIALFFEGPNSFTGEDVLELQGHGGTVIMDLLLEHCVQL-GARLARPGEFSERAFLNDK 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +      ++  + GE S      + +L  +R ++EA +DF EEE
Sbjct: 123 LDLAQAEAIADLIEASSRGAAENALRSLQGEFSKRVEALVQELIELRMYVEAAIDFPEEE 182

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +   V   +  ++  ++        G ++R G  +VI G  NAGKSSL NAL ++
Sbjct: 183 -IDFLADGHVAGKLASIRARLADVRDSAGQGALMREGMSVVIAGRPNAGKSSLLNALTEQ 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVT+I GTTRDVL   + L+G  + + DTAG+R+T D VEK G+ R + E+E AD +
Sbjct: 242 DTAIVTEIEGTTRDVLREHIHLDGMPLHVIDTAGLRDTPDAVEKIGVARAWSEIEKADRV 301

Query: 303 LLLKEINSKKEIS----FPKNIDFIFIGTKSDLYST---YTEEYDHL----------ISS 345
           LL+ +  +   +     +P+ +  +   ++  L       ++E   L          +S+
Sbjct: 302 LLMVDATTTDALDPMSIWPEFVQRLADPSRLTLVRNKVDTSQEPPGLDLSTATPIVRLSA 361

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGL 402
            TG+G++ L   +K I+  +   +  FS  + +RHL  L +    LE   A L+    G 
Sbjct: 362 KTGQGVDNLKEHLKDIMGFSTTTEGRFS--ARRRHLDALDRAATALENGDAQLSGHGAG- 418

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE+LR A  +LG+ITG    + LL  IF  FCIGK
Sbjct: 419 ELLAEDLRDAQQALGEITGEFSADDLLGEIFGSFCIGK 456


>gi|262166779|ref|ZP_06034516.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus
           VM223]
 gi|262026495|gb|EEY45163.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus
           VM223]
          Length = 406

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 147/402 (36%), Positives = 227/402 (56%), Gaps = 20/402 (4%)

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +G+ LD+G+ + FP+P SFTGED  E   HGG  V++ ++  +  +  +R A PGEFS R
Sbjct: 7   NGQQLDQGIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILHINGVRPARPGEFSER 66

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF N K+DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +
Sbjct: 67  AFLNDKMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAI 126

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF EEE +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL 
Sbjct: 127 DFPEEE-IDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLL 185

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL+ K+ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+
Sbjct: 186 NALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEI 245

Query: 297 ENADLILLL-----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYD 340
             AD +L +      E    +EI        P+NI    I  K+D     L   +  +  
Sbjct: 246 RQADRVLFMVDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPT 305

Query: 341 HL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
            + +S+ TG+G++ L   +K  +     +      + +RHL  L +   +L++     E 
Sbjct: 306 LIRLSAKTGQGVDALRQHLKECMGFAGNQ-EGGFMARRRHLDALERAAEHLDIGQQQLEG 364

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               DI+AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 365 YMAGDILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 406


>gi|300857411|ref|YP_003782395.1| putative tRNA modification GTPase [Clostridium ljungdahlii DSM
           13528]
 gi|300437526|gb|ADK17293.1| predicted tRNA modification GTPase [Clostridium ljungdahlii DSM
           13528]
          Length = 460

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 165/472 (34%), Positives = 279/472 (59%), Gaps = 44/472 (9%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRY 52
           M  E +TI AV+T      ISIIR+SG    ++   I K K        KP+    S+RY
Sbjct: 1   MMKEFDTIAAVATVLGEGGISIIRISGCDSLKIVNSIFKGKSNKNLIDMKPY----SMRY 56

Query: 53  FFGLD---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109
            + ++   G +LD+ L+    SP+S+T ED+ E + HGG+     +LEE+ K    R+A 
Sbjct: 57  GYIVEKSTGELLDEVLVSFMKSPKSYTSEDTVEINCHGGVVATKKVLEEVIK-SGARIAE 115

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF++RAF NG+IDL +AE++ D+I ++TE+  + +++  +G++S       +KL  + 
Sbjct: 116 PGEFTKRAFLNGRIDLSQAEAVIDIIRAKTELSMKSAVQQSTGKISKEINALREKLLEVI 175

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           + IEA +D+ EE D++  +S +V   +  + ++I+  +S  + G+I+R+G   VI+G  N
Sbjct: 176 AHIEATVDYPEE-DLEEMTSDKVSMRLQEILDEINHILSTAEEGKIVRDGLNTVIVGKPN 234

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKSSL N+L +++ AIVTD+PGTTRDV+   ++++G  +K+ DTAGIRET+D+VEK G+
Sbjct: 235 VGKSSLLNSLIRENRAIVTDVPGTTRDVIEEYMNIDGIPIKVIDTAGIRETEDLVEKIGV 294

Query: 290 KRTFLEVENADLILLL----KEINSK-KEI-SFPKNIDFIFIGTKSDLYSTYT-EEYDHL 342
           +R+  +++ ADL++L+    +E++ + KEI ++ K+  +I +  K D+      ++  +L
Sbjct: 295 ERSKQKIDEADLVILMLDSSEELDDEDKEIMNYVKDKKYIILLNKIDINDKINLDDICNL 354

Query: 343 ISSF-------TGEGLEELINKIKSILSNKFKK-------LPFSIPSHKRHLYHLSQTVR 388
            SS        TG+GL    +KIK+ + + F K       L  +   HK  L    ++  
Sbjct: 355 DSSCIIKTSIKTGKGL----DKIKTCIKDLFFKGEVKPGDLFITNARHKEGLIRAKESC- 409

Query: 389 YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +E     +    +D+ + ++R A  +LGKITG    E ++D IFS+FC+GK
Sbjct: 410 -IEALGALKNTSAIDLASIDIRNAWDNLGKITGDTLEEDIIDKIFSQFCLGK 460


>gi|241767064|ref|ZP_04764843.1| tRNA modification GTPase TrmE [Acidovorax delafieldii 2AN]
 gi|241362387|gb|EER58354.1| tRNA modification GTPase TrmE [Acidovorax delafieldii 2AN]
          Length = 473

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 158/476 (33%), Positives = 241/476 (50%), Gaps = 40/476 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +   ++ I A++T     A+ I+R+SG     +   +C +    PR+A+   F    G  
Sbjct: 2   LARHQDPIVAIATAPGRGAVGIVRVSGKGLTALVWALCGRALK-PREATYLPFRDARGEA 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-------------MPNLRL 107
           +D+GL + FP P S+TGED  E   HGG  V+  +L    +             +  LR+
Sbjct: 61  IDQGLALYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAAAPDAATGQPCLAGLRV 120

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEF+ RAF N KIDL +AE++ADLI + T    R +   ++G  S+      D L H
Sbjct: 121 AQPGEFTERAFLNDKIDLAQAEAIADLIDASTAAAARSASRSLTGAFSAEIHGLRDALIH 180

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA LDF EEE +      +    +  L++ ++  + + + G ++R G K+VI G 
Sbjct: 181 LRMLVEATLDFPEEE-IDFLRKADARGQLSNLEHTLAKVMQRAQQGALLREGIKVVIAGQ 239

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R++ D VE+ 
Sbjct: 240 PNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSVDEVERI 299

Query: 288 GIKRTFLEVENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLY 332
           GI R + E+  AD +L L +               I        P  +  I +  K D  
Sbjct: 300 GIARAWDEIAAADAVLFLHDLARWDCADYRAADAAIEGALADKLPTTVPVIDVWNKVDSV 359

Query: 333 STYT-----EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQT 386
           S  T     +     +S+ TG+GLE L + +  +    ++  P  +  +  RH+  L   
Sbjct: 360 SAATVPGAPQRPSVALSARTGQGLEALRSVLLQVAG--WQSAPEGVYIARARHVQALQAV 417

Query: 387 VRYL--EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +L    A L+ +   LD++AE LRLA  +L  ITG    + LL +IFS FCIGK
Sbjct: 418 QAHLAEAAAQLDARGPALDLLAEELRLAQNALNAITGEFSSDDLLGVIFSSFCIGK 473


>gi|190171262|gb|ACE63701.1| ThdF [Cronobacter dublinensis]
 gi|190171264|gb|ACE63702.1| ThdF [Cronobacter dublinensis]
          Length = 439

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 155/437 (35%), Positives = 243/437 (55%), Gaps = 31/437 (7%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRVSGQQARDVAQAVLGKL-PKSRYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN++
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + + 
Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304

Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358
           P  I  DFI           +  K+D+       +E   H    +S+ T +G++ L + +
Sbjct: 305 PAQIWPDFIARLPATLPITVVRNKADVTGEAPGISEVNGHSLVRLSARTSDGVDVLRSHL 364

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416
           K  +     ++     + +RHL  L     +L+   A L     G +++AE LRLA  +L
Sbjct: 365 KQSMGFD-TRMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 423 SEITGEFTSDDLLGRIF 439


>gi|190171346|gb|ACE63743.1| ThdF [Cronobacter turicensis]
 gi|190171348|gb|ACE63744.1| ThdF [Cronobacter turicensis]
          Length = 439

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 155/437 (35%), Positives = 243/437 (55%), Gaps = 31/437 (7%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN++
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + + 
Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304

Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358
           P  I  DFI           +  K+D+   +   +E   H    +S+ T +G++ L + +
Sbjct: 305 PAQIWPDFIARLPAKLPITVVRNKADVTGEHPGLSEVNGHSLIRLSARTSDGVDVLRSHL 364

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416
           K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  +L
Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 423 SEITGEFTSDDLLGRIF 439


>gi|307731534|ref|YP_003908758.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1003]
 gi|307586069|gb|ADN59467.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1003]
          Length = 464

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 155/460 (33%), Positives = 244/460 (53%), Gaps = 27/460 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
           + I A++T      I ++R+S    G +  Q        +   PR AS   F    G  L
Sbjct: 7   DPIVAIATAPGRGGIGVVRISFGRTGEAAAQPLMQALTGQPLAPRHASYVPFLDGSGNPL 66

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRAF 118
           D+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+RRAF
Sbjct: 67  DRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEFTRRAF 126

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            N K+DL +AE++ADLI + TE   R +   + G  S      ++++  +R  +EA LDF
Sbjct: 127 LNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHTLVEEVITLRMLVEATLDF 186

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            EEE +    + +    +  ++  ++S +++ + G ++R G  +V+ G  N GKSSL NA
Sbjct: 187 PEEE-IDFLEAADARGKLARIRERLASVLAEARQGALLREGLSVVLAGQPNVGKSSLLNA 245

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA  ++AIVT I GTTRD +   + +EG  + + DTAG+R+T+D VEK GI RT+ E+E 
Sbjct: 246 LAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTWSEIER 305

Query: 299 ADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYS--TYTEEYD-------HL 342
           AD++L L +    + ++ E     FP  +  + +  K+DL      T   D         
Sbjct: 306 ADVVLHLLDARTGMTAEDETIAKRFPAGVPVVRVLNKTDLVGLPPQTRALDVDLDLSEVR 365

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDC 400
           +S+  G+G+  L +++  I   +       + + +RHL  L     +L  A+   ++   
Sbjct: 366 LSAKQGDGVSLLRDELLRIAGWQAGAESVYL-ARERHLIALRAAQEHLATAAAHADQNSQ 424

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 425 ALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464


>gi|190171266|gb|ACE63703.1| ThdF [Cronobacter dublinensis]
          Length = 439

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 151/436 (34%), Positives = 238/436 (54%), Gaps = 29/436 (6%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN++
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS- 315
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +      
Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTNATDP 305

Query: 316 ----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIK 359
                      P  +    +  K+D+       +E   H    +S+ T +G++ L + +K
Sbjct: 306 AQIWPDFIARLPATLPITVVRNKADVTGEAPGISEVNGHSLVRLSARTSDGVDVLRSHLK 365

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLG 417
             +     ++     + +RHL  L     +L+   A L     G +++AE LRLA  +L 
Sbjct: 366 QSMGFD-TRMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAG-ELLAEELRLAQQALS 423

Query: 418 KITGCVDVEQLLDIIF 433
           +ITG    + LL  IF
Sbjct: 424 EITGEFTSDDLLGRIF 439


>gi|302880137|ref|YP_003848701.1| tRNA modification GTPase TrmE [Gallionella capsiferriformans ES-2]
 gi|302582926|gb|ADL56937.1| tRNA modification GTPase TrmE [Gallionella capsiferriformans ES-2]
          Length = 442

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 247/435 (56%), Gaps = 22/435 (5%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + ++R+SG     + E I  +  P  R A+   F    G ++D+G+ + FP+P S+TG
Sbjct: 18  GGVGVVRISGSGLGSIAEAILGRL-PVARHATYTDFKDETGEVIDQGIALYFPAPHSYTG 76

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG AV++ +L+    +  +RLA  GEF+RRAF N KIDL +AES+ADLI +
Sbjct: 77  EDVLELQGHGGAAVLHLLLQRCLGL-GVRLAEAGEFTRRAFLNDKIDLAQAESVADLIEA 135

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE-DVQNFSSKEVLNDI 196
            T    R +M  + G+ S+     +++LT +R  +EA LDF EE+ +V + S ++ L  +
Sbjct: 136 TTTEAARSAMRSLHGDFSAAINGLVEELTLLRMLVEAMLDFPEEDIEVVDTSHRDRL--L 193

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             +K  ++  ++  K G ++R G  I ++G  N GKSSL N LA ++VA+V+D+PGTTRD
Sbjct: 194 EKIKTKLAQTLATAKQGSLLREGAHIALVGRPNVGKSSLLNRLAGEEVALVSDVPGTTRD 253

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKE 313
           V+   + + G  + I DTAG+RE+ D VE  G+ RT   V  ADLIL+L +     S+ +
Sbjct: 254 VIRQAIQIRGVPLHIMDTAGLRESGDEVENMGMARTHQTVGRADLILMLLDAAQGCSEGD 313

Query: 314 IS----FPKNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELINKI-KSILSNKFK 367
           ++    FP  I  + +  K+D L    + +    IS+ +G G++ L  +I K I  +  +
Sbjct: 314 LAIIAGFPVEIPRLQVYNKADLLQGALSNDAGIYISAKSGLGIDTLREQILKQIGWHNQE 373

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDV 425
              F   + +RHL  L+Q   +L+ A   L+      ++ AE LRL   +L  ITG    
Sbjct: 374 GGTFI--ARERHLIALNQANIHLQQAEQLLDHP----ELFAEELRLTQQALSSITGKFSA 427

Query: 426 EQLLDIIFSKFCIGK 440
           + LL  IFS+FCIGK
Sbjct: 428 DDLLGEIFSRFCIGK 442


>gi|291296117|ref|YP_003507515.1| tRNA modification GTPase TrmE [Meiothermus ruber DSM 1279]
 gi|290471076|gb|ADD28495.1| tRNA modification GTPase TrmE [Meiothermus ruber DSM 1279]
          Length = 437

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 158/445 (35%), Positives = 246/445 (55%), Gaps = 25/445 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           + I A++T     A+ IIR+SG    ++   + K K P  + A  R+  G       G +
Sbjct: 8   DVIAAIATPPGKGAVGIIRVSGEGALELVSRLWKGKNPS-KLAGGRFTHGQICDPHTGEV 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ LL+VF  P S+TG+DSAE H HG  AV+  +L+ L ++   R A PGEF+ RA+ N
Sbjct: 67  LDEALLLVFRQPHSYTGQDSAELHTHGSPAVLRRVLQALFEL-GARPAQPGEFTLRAYLN 125

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSS----LYGQWIDKLTHIRSFIEADL 176
           GK+DL +AES+  LI +E++  RR ++ G+S  LS     L  Q  D L HI+++    L
Sbjct: 126 GKMDLAQAESVLSLIEAESDAARRQALRGLSAGLSQKISYLSEQLFDLLAHIQAW----L 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ EE  V+    +  L  +L    +I+  ++    G I + G +I ++G  NAGKSSL 
Sbjct: 182 DYPEE-GVEPAQIQAGLEPVL---QEITHLLATAPAGRIAQKGARIALVGAPNAGKSSLL 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + AIVT IPGTTRD L   L++ G  +   DTAG+RETDD++EK G++R     
Sbjct: 238 NALLGYERAIVTPIPGTTRDYLEAPLEIAGVPIVAVDTAGVRETDDVIEKSGVERALAIA 297

Query: 297 ENADLILLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           + ADL+L L + +  +    P   +    + TK+DL   +++     +SS TG GL EL 
Sbjct: 298 QEADLVLYLADQSQPRPTPPPLPWERTLKVATKADLAPAWSDAAYLRVSSQTGLGLPELR 357

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
            +I   L  +  +    + S++RH+  L +   +L+ A L   +   D+ A ++  A  +
Sbjct: 358 QQIHHRLLGQAPEGELWV-SNERHVEALRRAQGHLQEA-LQAPE---DLAALSIEQALEA 412

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           L +I G    E+++D +F  FC+GK
Sbjct: 413 LAEILGKDVSEEVIDRVFRNFCVGK 437


>gi|313675601|ref|YP_004053597.1| tRNA modification GTPase trme [Marivirga tractuosa DSM 4126]
 gi|312942299|gb|ADR21489.1| tRNA modification GTPase trmE [Marivirga tractuosa DSM 4126]
          Length = 457

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 170/465 (36%), Positives = 266/465 (57%), Gaps = 34/465 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           ++  KETI A+ST     AI++IRLSG     +   + K K    +K+   +F  +   +
Sbjct: 2   LDQLKETIIALSTAPGVGAIAVIRLSGEDAITITNSVFKGKNLLQQKSHTAHFGTIRNDE 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G I+D+ +  +F +P SFT E+  E   HG   +V  +++ L     +RLA  GEF++RA
Sbjct: 62  GEIIDEVVATLFIAPHSFTKENVVEISCHGSPYIVQRLIK-LFLTKGVRLAKAGEFTQRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+ DL +AE++ADLI+++TE   + ++  M G  S    Q   +L H  S IE +LD
Sbjct: 121 FLNGQFDLAQAEAVADLINADTEASHKAALNQMRGGFSEQIKQLRAELIHFASMIELELD 180

Query: 178 FSEEEDVQNFSS----KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           F EE DV+ F+     K+++N +L +   I++ +S   LG +I+NG   VI G  N GKS
Sbjct: 181 FGEE-DVE-FADRDDLKKLVNQLLSV---ITALVSSFDLGNVIKNGVPTVIAGKPNTGKS 235

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           +L NAL  ++ AIV+DI GTTRD +  +++LEG + +  DTAG+R+T+D VE  G++RT 
Sbjct: 236 TLLNALLNEEKAIVSDIAGTTRDFIEDEINLEGVVFRFIDTAGLRDTEDKVEAIGVQRTK 295

Query: 294 LEVENADLILL--------LKEINSKKEISFPKN--IDFIFIGTK-----SDLYSTYTEE 338
            +++ A LI+         L E+N  ++I+  +N  I FI +G K      DLY+   ++
Sbjct: 296 DKMKQASLIVYMFDLKNDTLTEVN--RDINMLENLGIPFIKVGNKLDEAQQDLYNEMKKD 353

Query: 339 YDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASL 395
            + L IS+   EGLE L  K+   ++    K   ++ ++ RH  +L QT   L   +  L
Sbjct: 354 KNTLFISAINKEGLEALKTKLVETVNLDNFKTGDTVVTNIRHYDNLVQTQNSLNAVLRGL 413

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++   G D +A ++R A   LG+ITG +  + LL  IFSKFCIGK
Sbjct: 414 DDNITG-DFLALDIRHALRFLGEITGEITTDDLLANIFSKFCIGK 457


>gi|295678212|ref|YP_003606736.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1002]
 gi|295438055|gb|ADG17225.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1002]
          Length = 464

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 153/465 (32%), Positives = 245/465 (52%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G +  Q        +    R AS   F   
Sbjct: 2   LTTDSDPIVAIATAPGRGGIGVVRISFGRAGAAAAQPLMQALTGQTLTARHASYVPFLDA 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF
Sbjct: 62  SGNPLDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++++  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEEVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF EEE +    + +    +  ++  ++  +S+ + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPEEE-IDFLEAADARGKLARIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R+T+D VEK GI+RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIERTW 300

Query: 294 LEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDL--YSTYTEEYDH--- 341
            E+E AD++L L +  +            FP+ +  + +  K+DL   +  T+  D    
Sbjct: 301 GEIERADVVLHLLDARAGMTTDDETIAGRFPRGVPVVRVLNKTDLTGLAPATQALDADLE 360

Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
                +S+  G+G+  L +++  I   +       + + +RHL  L     +L  A+ + 
Sbjct: 361 LSEVRLSAKQGDGVALLRDELLRIAGWQAGAESVYL-ARERHLIALRAADEHLATAAAHA 419

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 EQNAQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464


>gi|186477840|ref|YP_001859310.1| tRNA modification GTPase TrmE [Burkholderia phymatum STM815]
 gi|184194299|gb|ACC72264.1| tRNA modification GTPase TrmE [Burkholderia phymatum STM815]
          Length = 466

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 155/464 (33%), Positives = 244/464 (52%), Gaps = 29/464 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           + + I A++T      I ++R+S    G +  Q        +   PR AS   F    G 
Sbjct: 5   DSDPIVAIATAPGRGGIGVVRISLGRAGEAAAQPMMQALSGQTWTPRHASYVPFLDGGGN 64

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRR 116
            LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+RR
Sbjct: 65  ALDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCIDAGQAFGLRLAEPGEFTRR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +EA L
Sbjct: 125 AFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSRDIHALVEDVITLRMLVEATL 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF EEE +    + +    +  ++  ++  +S+ + G ++R G  +V+ G  N GKSSL 
Sbjct: 185 DFPEEE-IDFLEAADARGKLARIRERLALVLSEARQGALLREGLSVVLAGQPNVGKSSLL 243

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+RET+D VEK GI+RT+ E+
Sbjct: 244 NALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHVIDTAGLRETEDEVEKIGIERTWGEI 303

Query: 297 ENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDL--YSTYTEEYDH------ 341
           E AD++L L +  S            FP  +  + +  K+DL   + + E+ +       
Sbjct: 304 ERADVVLHLLDARSGMTDDDEAIAARFPAGVPVVRVLNKTDLTGAAPHVEKLNASGEPDL 363

Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LN 396
               +S+  G+G+  L  ++  I   +       + + +RHL  L     +L +A+   +
Sbjct: 364 CEVRLSAKMGDGISLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQNHLGLAAEHAD 422

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 423 QNAQALDLFAEELRLAQDQLNSITGEFTSDDLLGVIFSRFCIGK 466


>gi|326797440|ref|YP_004315260.1| tRNA modification GTPase mnmE [Marinomonas mediterranea MMB-1]
 gi|326548204|gb|ADZ93424.1| tRNA modification GTPase mnmE [Marinomonas mediterranea MMB-1]
          Length = 459

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 161/457 (35%), Positives = 252/457 (55%), Gaps = 26/457 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           +++TI A +T      + IIRLSGP    + + I     P PR A    F   +   LD 
Sbjct: 9   DQDTIAAQATAPGRGGVGIIRLSGPKSLDIAKAIIGFD-PKPRYAHYVPFKDDNDEQLDM 67

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ ++     +   RLA PGEFS RAF N K+
Sbjct: 68  GIALYFPGPNSFTGEDVFELQGHGGPVILDMLMTRCTAL-GARLARPGEFSERAFLNDKM 126

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI S +E   + ++  + G  S    + ++ L H+R ++EA +DF EEE 
Sbjct: 127 DLTQAEAIADLIDSSSEQAAKCALRSLQGAFSKRVTELVEALIHLRIYVEAAIDFPEEE- 185

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +      +V  ++  ++  +++ + +   G ++R G  +VI G  NAGKSSL N L+ KD
Sbjct: 186 IDFIGDGKVAAELEGIQIKLNAVLKEANQGALLREGMNVVIAGRPNAGKSSLLNTLSGKD 245

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R++ D VE+ GI+R + E+  AD IL
Sbjct: 246 SAIVTNIAGTTRDVLREHIHLDGMPLHIIDTAGLRDSPDEVEQIGIQRAWDEIHKADRIL 305

Query: 304 LL---KEINSK--KEI------SFPKNIDFIFIGTKSDLY--STYTEEYDHL----ISSF 346
           L+   + + SK  +EI        P       +  K DL   +T  E  + L    +S+ 
Sbjct: 306 LMVDSQTVGSKDPEEIWPEFVAQLPSRDKLTLVRNKVDLTKETTGLESINDLPILSLSAK 365

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---D 403
           TG+G++ L   +K+++  +       I + +RH+  L++T  +L   S +E+  G    +
Sbjct: 366 TGQGIDALSQHLKAVMGFESTTEGGFI-ARRRHIEALNKTNDFLR--SGHEQLHGFGAGE 422

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+L+ A  +L +ITG    + LL  IF  FCIGK
Sbjct: 423 LLAEDLKEAQQALSEITGEFTSDDLLGRIFGSFCIGK 459


>gi|187735151|ref|YP_001877263.1| tRNA modification GTPase TrmE [Akkermansia muciniphila ATCC
           BAA-835]
 gi|226704777|sp|B2UPK5|MNME_AKKM8 RecName: Full=tRNA modification GTPase mnmE
 gi|187425203|gb|ACD04482.1| tRNA modification GTPase TrmE [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 449

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 150/451 (33%), Positives = 246/451 (54%), Gaps = 13/451 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQV---CEFICKKKKPFPRKASLRYFFGLD 57
           M   + TI A +T A   AI++IR+SGP C  +   C      ++  PR+A+L      +
Sbjct: 1   MTDPERTIAAQATAAGQGAIAVIRMSGPGCMDILKQCTPAAFTERLRPRRATLVCIRDAE 60

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  +D+ L+  FP+P S+TGED+AE   HGG+ V + +L+ L +      A PGEF++RA
Sbjct: 61  GAAIDQALVTWFPAPASYTGEDTAEISCHGGMLVTDRLLKRLYQC-GASPAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ D+IS+ +++  + +   + G + +   +  D L H+ + IEA +D
Sbjct: 120 FLNGRMDLTQAEAVMDVISAGSDLALKAAQSQLDGGIGAQVDELKDNLVHVLAHIEAYID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F +E D+   ++ ++L  +  ++  + + +   + G ++R G +  I G  N GKSSL N
Sbjct: 180 FPDE-DISPDTASDLLARLRNMEEKLDTLLKTAEGGRLLREGIRTAIAGPPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L   D AIV++I GTTRD +   + L G  +++ DTAG+RE+ D++E+ GI RT   +E
Sbjct: 239 TLLGYDRAIVSNIAGTTRDTVEESIQLAGLALRLIDTAGVRESSDVIEQAGITRTNRALE 298

Query: 298 NADLILLLKEINSKKEISFPKNI---DFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLE 352
            ADL+L + + ++ +   FP  +     + I  K DL  +  +        S  TGEG +
Sbjct: 299 TADLVLEVADASTPRVKDFPAPVLTAPRLLILNKCDLGIHPDWKAVPGIRFSCATGEGRK 358

Query: 353 ELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENL 409
           EL   I    S+       S  +  + RH + L     ++ +AS +  +    +  A  L
Sbjct: 359 ELEEAIIQAFSSSLPGETGSSLVAINARHQHELGLCREHVRLASESISRQESPEFTALEL 418

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R A   LG+ITG VD E +L  IFS FC+GK
Sbjct: 419 REALTHLGEITGAVDTEDVLGAIFSSFCLGK 449


>gi|159899958|ref|YP_001546205.1| tRNA modification GTPase TrmE [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892997|gb|ABX06077.1| tRNA modification GTPase TrmE [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 454

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 170/462 (36%), Positives = 253/462 (54%), Gaps = 39/462 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLD--GRILD 62
           +TI A++T      + IIR+SGP    + + + K ++K   R   +RY   LD  G+I+D
Sbjct: 5   DTIAALATPPGVGGVGIIRVSGPQSLAIAQALIKPRRKGVWRSYQMRYGHVLDEHGQIVD 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L + F  P SFTGED  E H HGG   +   L  LA     RLANPGEFS RAF NG+
Sbjct: 65  EVLAVFFKGPRSFTGEDILEIHCHGGPLPLRRTLT-LALAHGARLANPGEFSLRAFANGR 123

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AE+  D+I ++T +   L+++ + G LS       ++L +  +++ A  DF E+ 
Sbjct: 124 IDLVQAEATLDVIEAQTNLGLSLALDQLGGGLSRDLRTLREQLMYPLAYVTALTDFPED- 182

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
              +  S+E+   +   ++ +S  ++    G ++R G +  ++G  NAGKSSL NAL + 
Sbjct: 183 ---DVPSEELQQPLQQAQSLLSQLLAGADQGVVVREGARAALVGRPNAGKSSLMNALLRT 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT IPGTTRD L    +L G  V + DTAGI ETDD+VE+ G++R+   +  ADL+
Sbjct: 240 ERAIVTAIPGTTRDTLEETANLGGIPVVLIDTAGITETDDVVERIGVERSRAALSKADLV 299

Query: 303 LLLKEINSKKEISFPKNIDF---------IFIGTKSDL-----YSTYTEEYDHL-----I 343
           LLL  I+  + +S P+++           I I TK+DL      +  T+ +  L     I
Sbjct: 300 LLL--IDGSQPLS-PEDLAIAQLTHERPTIVIATKADLGQHADLTALTQTHPKLRGSIAI 356

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMA--SLNEK 398
           SS  G GL+ L   +   L      LP S   + ++ RH   L +    LE A   L E 
Sbjct: 357 SSQAGTGLDYLGTMVAEQL---LGGLPLSDARLVTNPRHREALRRANAALEQAIQGLREG 413

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D+IA +L  A  SLG+ITG      LL++IFS+FCIGK
Sbjct: 414 RP-VDLIAIDLHEAIASLGEITGETVEHDLLNMIFSRFCIGK 454


>gi|289662289|ref|ZP_06483870.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 446

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 153/450 (34%), Positives = 247/450 (54%), Gaps = 14/450 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +   +   PR A    F    G +
Sbjct: 1   MSSSSSTIVAIASAAGIGGVGIVRLSGPQSVQIAAQLGIARLQ-PRHAHYARFRDAQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  VDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       D LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSRRVDAVADTLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  +      +V + +   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 EP-LDTLGGNQVRDGLTQARTLLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+RE  D +E+EG++R   E+E AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDAIEREGMRRARAELERAD 297

Query: 301 LILLL---KEINSKKEISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGL 351
           L L++   ++  + +E +    ID +    +I  K DL S     +    ++S+ TG+GL
Sbjct: 298 LALVVLDARDPQAARE-AIGDAIDAVPRQLWIHNKCDLLSDAVPLDANAIVVSAVTGQGL 356

Query: 352 EELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           E+L  +++ + L +  + +     +  RH+  L +  +++++A L      L++ AE LR
Sbjct: 357 EQLHIRLRELALGDGVESVDGEFSARTRHVEALRRAEQHVDIADLELGFEQLELAAEELR 416

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 417 LAHEALGEITGKISADDLLGKIFSSFCIGK 446


>gi|190171290|gb|ACE63715.1| ThdF [Cronobacter muytjensii]
          Length = 439

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 155/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN++
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + + 
Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304

Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358
           P  I  DFI           +  K+D+       +E   H    +S+ T +G++ L + +
Sbjct: 305 PAQIWPDFIARLPATLPITVVRNKADVTGELPGISEVNGHSLVRLSARTSDGVDVLRSHL 364

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416
           K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  +L
Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 423 SEITGEFTSDDLLGRIF 439


>gi|329908683|ref|ZP_08274923.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546633|gb|EGF31597.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 433

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 235/437 (53%), Gaps = 28/437 (6%)

Query: 27  GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVH 86
           G    ++C  +  K     R+A+   F   DG  +D+GL + F +P S+TGED  E   H
Sbjct: 2   GNIAAEICAMLPGKTLQ-ARRATYTRFVDADGSTIDQGLALYFKAPHSYTGEDVLELQGH 60

Query: 87  GGIAVVNGILEELAKMP---NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143
           GG  V+  +L    +     +LRLA PGEF++RAF N K+DL +AE++ADLI + TE   
Sbjct: 61  GGPVVMQLLLARCLQAGSHIDLRLAQPGEFTQRAFLNDKLDLAQAEAVADLIDASTEAAA 120

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
           R + + +SG  S +    ++++TH+R  +EA LDF EEE +      +    +  +++ +
Sbjct: 121 RSASQSLSGVFSGIIRTLVEQVTHLRMLVEATLDFPEEE-IDFLEKSDARGKLAAIRDTL 179

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
                Q   G ++R+G  IV+ G  N GKSSL NALA  D+AIVT I GTTRD +T  + 
Sbjct: 180 QKVFRQSAQGALLRDGLNIVLAGQPNVGKSSLLNALAGADIAIVTPIAGTTRDKVTETIQ 239

Query: 264 LEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----- 315
           +EG  + I DTAGIR   E  D VE+ GI+RT+  V  AD+I+ L +      ++     
Sbjct: 240 IEGIPLNIIDTAGIRYDAEAIDDVERIGIERTWAAVAQADVIIHLLDACRGPTLADESIV 299

Query: 316 --FPKNIDFIFIGTKSDLYSTYTEEYDHLISSF-----TGEGLEELINKIKSILSNKFKK 368
             FP NI  + +  K DL S +    D L+ +        + L   + + + +    +++
Sbjct: 300 ARFPANIPVMRVWNKIDL-SGHKPAIDRLVDATHIYLSATDQLGMELLREELLRLAGWQQ 358

Query: 369 LPFSIP-SHKRHLYHLSQTVRYL----EMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
              S+  + +RHL  L+    +L    E A+LN  D  LD+ AE LRLA   L  ITG  
Sbjct: 359 TGESLYLARERHLVALAAAQTHLQFAAEHAALN--DHALDLFAEELRLAQEQLSSITGAF 416

Query: 424 DVEQLLDIIFSKFCIGK 440
             + LL +IFS+FCIGK
Sbjct: 417 TSDDLLGVIFSRFCIGK 433


>gi|190171286|gb|ACE63713.1| ThdF [Cronobacter muytjensii]
 gi|190171288|gb|ACE63714.1| ThdF [Cronobacter muytjensii]
 gi|190171292|gb|ACE63716.1| ThdF [Cronobacter muytjensii]
 gi|190171294|gb|ACE63717.1| ThdF [Cronobacter muytjensii]
          Length = 439

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 155/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN++
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + + 
Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304

Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358
           P  I  DFI           +  K+D+       +E   H    +S+ T +G++ L + +
Sbjct: 305 PAQIWPDFIARLPATLPITVVRNKADVTGELPGISEVNGHSLVRLSARTSDGVDVLRSHL 364

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416
           K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  +L
Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 423 SEITGEFTSDDLLGRIF 439


>gi|170697748|ref|ZP_02888835.1| tRNA modification GTPase TrmE [Burkholderia ambifaria IOP40-10]
 gi|170137363|gb|EDT05604.1| tRNA modification GTPase TrmE [Burkholderia ambifaria IOP40-10]
          Length = 464

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 157/464 (33%), Positives = 246/464 (53%), Gaps = 31/464 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T A    I ++R+S       +   + + +C ++   PR AS   F    G
Sbjct: 5   DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQRLT-PRHASYVPFVDEHG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 64  APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIREQLAQVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302

Query: 296 VENADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYST------YTEEYD-- 340
           +E AD++L L +    + +  E+    FP  +  + +  K+DL            E D  
Sbjct: 303 IERADVVLHLLDSRTGMTADDEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPAAEGDLT 362

Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LN 396
             HL S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+    
Sbjct: 363 EVHL-SAKRGDGIDMLRTELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAADHAE 420

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 421 QRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|190171260|gb|ACE63700.1| ThdF [Cronobacter dublinensis]
          Length = 439

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 155/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN++
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + + 
Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304

Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358
           P  I  DFI           +  K+D+       +E   H    +S+ T +G++ L + +
Sbjct: 305 PAQIWPDFIARLPATLPITVVRNKADVTGEVPGISEVNGHSLVRLSARTSDGVDVLRSHL 364

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416
           K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  +L
Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 423 SEITGEFTSDDLLGRIF 439


>gi|190171296|gb|ACE63718.1| ThdF [Cronobacter sakazakii]
 gi|190171316|gb|ACE63728.1| ThdF [Cronobacter sakazakii]
 gi|190171318|gb|ACE63729.1| ThdF [Cronobacter sakazakii]
 gi|190171328|gb|ACE63734.1| ThdF [Cronobacter sakazakii]
 gi|190171344|gb|ACE63742.1| ThdF [Cronobacter sakazakii]
          Length = 439

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 156/437 (35%), Positives = 241/437 (55%), Gaps = 31/437 (7%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +  +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTLSGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN++
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + + 
Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304

Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358
           P  I  DFI           +  K+D+       +E   H    +S+ T EG++ L N +
Sbjct: 305 PAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVDVLRNHL 364

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416
           K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  +L
Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 423 SEITGEFTSDDLLGRIF 439


>gi|188996901|ref|YP_001931152.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931968|gb|ACD66598.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 447

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 168/456 (36%), Positives = 258/456 (56%), Gaps = 31/456 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDK 63
           K+TI A +T  +PSAISI+R+SG    ++   I    +   PRK      F   G I+D+
Sbjct: 3   KDTIVANATPLIPSAISIVRISGDKALEIGRKIFSLPENITPRKVYFGKIFNNKGEIIDE 62

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GL + F  P+SFTGED  E + HG + VV  ILE    M   RLA PGEF+ RAF NGKI
Sbjct: 63  GLFVYFQKPKSFTGEDLVEIYPHGSVPVVKSILEACF-MYGARLARPGEFTERAFLNGKI 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DLL+AE++ADLI++++E   ++++  + G+LS       +KL ++ S IEA+++F E  D
Sbjct: 122 DLLQAEAIADLINAKSERAAKIAVSILEGKLSKQINILREKLINLISLIEAEINFPE--D 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V+   S  +++ +  +K+ I   ++  K G +I+ G K+ I+G  N GKSSLFNAL   +
Sbjct: 180 VEEIDSSLIISQLEEVKSQIDKLLASYKKGNLIKEGIKLAIVGRPNVGKSSLFNALVGYE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV++I GTTRD +   L ++   V + DTAG+R+T+D +EK GI++   ++  AD+IL
Sbjct: 240 RAIVSEIQGTTRDFIEESLKIKDIPVILLDTAGLRDTEDKIEKIGIEKAQEKINEADIIL 299

Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI--SSFTGEGLE 352
            + + +S      KK     K+   I +  KSDL +    + E+YD+++  S    +G++
Sbjct: 300 FVIDASSGFTEEDKKIYDKIKDKPHIIVVNKSDLNNKPIDFFEKYDNIVYTSIINNQGIK 359

Query: 353 ELINKIKSILS------NKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           EL  KI + L       + F  L  S  +   K  +  +   + YL    +N K+  +  
Sbjct: 360 ELEEKIITSLGIIEKEDDLFINLRQSTLLKQAKEKIEEIENHINYL----INNKEILMIY 415

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I E L      L ++ G +  E +LD IFSKFCIGK
Sbjct: 416 IQEALNY----LDEVVGAISTEDVLDNIFSKFCIGK 447


>gi|91785808|ref|YP_561014.1| tRNA modification GTPase TrmE [Burkholderia xenovorans LB400]
 gi|122970036|sp|Q13SH7|MNME_BURXL RecName: Full=tRNA modification GTPase mnmE
 gi|91689762|gb|ABE32962.1| tRNA modification GTPase trmE [Burkholderia xenovorans LB400]
          Length = 464

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 153/465 (32%), Positives = 241/465 (51%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G +  Q        +    R+AS   F   
Sbjct: 2   LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTGQTLAARRASYVPFLDA 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF
Sbjct: 62  SGDALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEDVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF EEE +    + +    +  ++  +   +S+ + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPEEE-IDFLEAADARGKLARIRERLGHVLSEARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R+T+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDL--YSTYTEEYDH--- 341
            E+E AD++L L +  +   +        FP  +  + +  K+DL   +  T   D    
Sbjct: 301 NEIERADVVLHLLDARTGMTVEDEAIAGRFPAGVPVVRVLNKTDLTGLAPATRALDADLD 360

Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--L 395
                +S+  G+G+  L  ++  I   +       + + +RHL  L     +L  A+   
Sbjct: 361 LSEVRLSAKQGDGVALLREELLRIAGWQAGAESVYL-ARERHLIALRAAEEHLATAAAHA 419

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464


>gi|296157619|ref|ZP_06840454.1| tRNA modification GTPase TrmE [Burkholderia sp. Ch1-1]
 gi|295892391|gb|EFG72174.1| tRNA modification GTPase TrmE [Burkholderia sp. Ch1-1]
          Length = 464

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 153/465 (32%), Positives = 242/465 (52%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G +  Q        +    R AS   F   
Sbjct: 2   LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTGQTLAARHASYVPFLDA 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEF 113
           +G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF
Sbjct: 62  NGSALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +E
Sbjct: 122 TRRAFLNDKLDLTQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEDVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF EEE +    + +    +  ++  ++  +S+ + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPEEE-IDFLEAADARGKLARIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R+T+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDL--YSTYTEEYDH--- 341
            E+E AD++L L +  +   +        FP  +  + +  K+DL   +  T   D    
Sbjct: 301 NEIERADVVLHLLDARTGMTVEDEAIAGRFPAGVPVVRVLNKTDLTGLAPATRALDADPD 360

Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--L 395
                +S+  G+G+  L  ++  I   +       + + +RHL  L     +L  A+   
Sbjct: 361 LSEVRLSAKQGDGVALLREELLRIAGWQAGAESVYL-ARERHLIALRAAEEHLATAAAHA 419

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464


>gi|123967744|ref|YP_001008602.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. AS9601]
 gi|166234808|sp|A2BNY4|MNME_PROMS RecName: Full=tRNA modification GTPase mnmE
 gi|123197854|gb|ABM69495.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus str. AS9601]
          Length = 460

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 170/442 (38%), Positives = 242/442 (54%), Gaps = 25/442 (5%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPSPE 73
            ++IIR+SG      C+ I + K  +  + S R F G        + +D+ L++V  SP 
Sbjct: 24  GVAIIRVSGKDAINSCKKIVQTKSKYAWE-SHRVFRGFIQENKQNKFIDEVLILVMKSPN 82

Query: 74  SFTGEDSAEFHVHGGIAVVNGILE-ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
           SFTGED  E H HGGI +VN +L+  L+    +RLANPGEFS+RAF NGKIDL +AES+ 
Sbjct: 83  SFTGEDVVELHCHGGIIIVNKVLKILLSNNSRVRLANPGEFSQRAFLNGKIDLTQAESIN 142

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
            LI++       L+  G+ GE+        + L +    IEA +DF  EED  +F   + 
Sbjct: 143 QLINASNARSAELAFSGVQGEIKKKIDDIKNDLINQLCEIEARVDF--EEDFTDFDYTKY 200

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           L +I  +K  I   I   K    I NG  I ++G +N GKSSL N LAKK+ AIVT+IPG
Sbjct: 201 LKNIKKVKEKIELLIENAKRNSYIHNGISIALIGKTNVGKSSLLNLLAKKEKAIVTNIPG 260

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI---- 308
           TTRDV+ ++L +    +KI DTAGIRET + +E  GIK++F +++ +D I+ +  +    
Sbjct: 261 TTRDVIEVNLTINDIPMKIIDTAGIRETHEQIESIGIKKSFGKIKESDFIIYIYSLEEGF 320

Query: 309 --NSKKEIS-FPKNIDFIFIGTKSDLY---STYTEEYDH--LISSFTGEGLEELINKIKS 360
               KK I   PK      +G K DL    +  + E  H  L+S    +G   LI+ I  
Sbjct: 321 NEEDKKIIQEIPKEKLITILGNKKDLIDCKNINSNELKHTILMSIKNNDGERLLIDTI-- 378

Query: 361 ILSNKFKKLP-FSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGK 418
           I     K++   +I  + RHL +LS  +  L +   + E     D+++  LR    +L K
Sbjct: 379 IKKCGLKQVENINIFLNDRHLTNLSACLSNLNDTDEIIENKLPFDLLSIELRDGIQNLSK 438

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           ITG    E+LLD IFSKFCIGK
Sbjct: 439 ITGQELTEELLDNIFSKFCIGK 460


>gi|152988592|ref|YP_001351679.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PA7]
 gi|166234809|sp|A6VF44|MNME_PSEA7 RecName: Full=tRNA modification GTPase mnmE
 gi|150963750|gb|ABR85775.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PA7]
          Length = 455

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 158/444 (35%), Positives = 245/444 (55%), Gaps = 27/444 (6%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SGP   ++   +  ++   PR A    F    G+++D+GL + FP P SFTG
Sbjct: 18  GGVGIVRVSGPLAGRIAVEVSGRELK-PRHAHYGPFLDGGGQVIDEGLSLYFPGPNSFTG 76

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  V++ +++   ++   R A PGEFS RAF N K+DL +AE++ADLI +
Sbjct: 77  EDVLELQGHGGPVVLDLLVQRCLEL-GARQARPGEFSERAFLNDKLDLAQAEAIADLIEA 135

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   R ++  + GE S       ++L  +R ++EA +DF EEE +   +   VL  + 
Sbjct: 136 SSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPEEE-IDFLADGHVLGLLE 194

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            ++ ++S+   +   G ++R+G  +VI G  NAGKSSL NALA ++ AIVTDI GTTRDV
Sbjct: 195 KVRTELSTVRREASQGALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 254

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315
           L   + ++G  + + DTAG+R+T+D VEK G++R    +  AD +LL+ +  + +     
Sbjct: 255 LREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVERALKAIGEADRVLLVVDATAPEAADPF 314

Query: 316 --FPKNID-------FIFIGTKSDLYS---TYTEEYD-HL---ISSFTGEGLEELINKIK 359
             +P+ +D          I  K+DL +      E  D H+   +S+ T  GLE L   +K
Sbjct: 315 SLWPEFLDQRPEPGKVTLIRNKADLSTEAIGLEESADGHVTITLSARTNAGLELLREHLK 374

Query: 360 SILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSL 416
           + +   +  +  FS  + +RHL  L      LE   A L     G +++AE+LR A   L
Sbjct: 375 ACMGFEQTAESGFS--ARRRHLEALRLAGNALEHGHAQLIHNGAG-ELLAEDLRQAQQHL 431

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G+ITG    + LL  IFS FCIGK
Sbjct: 432 GEITGAFTPDDLLGRIFSSFCIGK 455


>gi|113866134|ref|YP_724623.1| tRNA modification GTPase TrmE [Ralstonia eutropha H16]
 gi|113524910|emb|CAJ91255.1| Predicted GTPase [Ralstonia eutropha H16]
          Length = 488

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 159/478 (33%), Positives = 246/478 (51%), Gaps = 41/478 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   +  I A++T      I ++R+SGP    V   +C +    PR A+   F    G++
Sbjct: 14  MTAPQVPIAAIATAPGRGGIGVVRVSGPDVGPVMRSVCGQALK-PRHATYLPFLDGHGKV 72

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRA 117
           +D GL + FP+P S+TGE+  E   HGG  V+  +L    +  +   LRLA PGEF+RRA
Sbjct: 73  IDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGDGIGLRLAEPGEFTRRA 132

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K+DL +AE++ADLI + TE   R +   M GE S+   Q +DK+ H+R  +EA LD
Sbjct: 133 FLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSNAIRQLVDKVIHLRMLVEATLD 192

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EEE +      +    +  ++ ++S  ++Q + G ++R G  +V+ G  N GKSSL N
Sbjct: 193 FPEEE-IDFLEQSDARGQLATIRTELSGVLAQARQGALLREGLSVVLAGQPNVGKSSLLN 251

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEV 296
           ALA  ++AIVT I GTTRD +   + ++G  + I DTAG+RE   D VE+ GI+RT+  +
Sbjct: 252 ALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLREHAADEVERIGIERTWDAI 311

Query: 297 ENADLILLLKE---------------INSKKEISFPKNI----------------DFIFI 325
             AD++L L +               I+ +     P                   D +F 
Sbjct: 312 RRADIVLHLVDATDYLRHGLSETDDAIDDQLSGQLPPGSPIVRIVNKIDKAPAVGDVVFG 371

Query: 326 GTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           G +  + +        + IS+ TG G+E L  ++  ++  +      +  + +RHL  L 
Sbjct: 372 GNRPHVVAANGPNPTEIWISARTGAGIELLRRELLRLVGWQSGN-EGNFLARERHLTALR 430

Query: 385 QTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +L++A+     +   LD+ AE LRLA   L  ITG    + LL  IF++FCIGK
Sbjct: 431 NAQSHLDIAAEQAEHQAQALDLFAEELRLAQDCLNSITGEFTSDDLLGTIFTRFCIGK 488


>gi|190171352|gb|ACE63746.1| ThdF [Cronobacter turicensis]
          Length = 439

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 155/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SG     V + +  K  P  R A    F   DG  LD+G+ + FP P SFTGED
Sbjct: 11  VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +
Sbjct: 70  VLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAIADLIDASS 129

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R ++  + G  S+     ++ LTH+R F+EA +DF +EE +   S  ++   LN++
Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +    D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRD
Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           VL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +  + + 
Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304

Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358
           P  I  DFI           +  K+D+       +E   H    +S+ T +G++ L + +
Sbjct: 305 PAQIWPDFIARLPAKLPITVVRNKADVTGEQPGLSEVNGHSLIRLSARTSDGVDVLRSHL 364

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416
           K  +      +     + +RHL  L     +L+   A L     G +++AE LRLA  +L
Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 423 SEITGEFTSDDLLGRIF 439


>gi|126657505|ref|ZP_01728661.1| tRNA modification GTPase [Cyanothece sp. CCY0110]
 gi|126621209|gb|EAZ91922.1| tRNA modification GTPase [Cyanothece sp. CCY0110]
          Length = 460

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 167/467 (35%), Positives = 256/467 (54%), Gaps = 37/467 (7%)

Query: 1   MNHEKETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL 56
           M  + ETI A++T  +P   +I IIRLSG +   + +  FI   K+ +    S R  +G 
Sbjct: 4   MITQGETIAAIATAIVPQQGSIGIIRLSGNNALNIAQTLFIAPGKQKW---ESHRILYGY 60

Query: 57  -----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
                  ++LD+ LL++  +P S+T ED  EFH HGGI  V  +L+ L       LA PG
Sbjct: 61  IRHPQTEQVLDEALLLMMLAPRSYTREDVIEFHCHGGIMPVQQVLQ-LCLEQGAILAQPG 119

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH---- 167
           EF+ RAF NG+IDL +AES+++L+S+ ++   ++++ G+ G+L+    Q I KL H    
Sbjct: 120 EFTLRAFLNGRIDLTQAESISELVSARSQQASQMALAGLQGKLA----QPIQKLRHHCLD 175

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           I + IEA +DF  E+D+     K +   +  +   + S +   + GE++RNG K+ I+G 
Sbjct: 176 ILAEIEARIDF--EDDLPPLDKKAISQGLEEILEQVESILKTAEQGELLRNGLKVAIVGR 233

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKSSL NA ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIR+T D VEK 
Sbjct: 234 PNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRQTTDQVEKI 293

Query: 288 GIKRTFLEVENADLILLLKEIN-----SKKEISFP-KNIDFIFIGTKSDL----YSTYTE 337
           G++R+ L    ADL+LL  +          EI  P +++  I +  K DL     S +  
Sbjct: 294 GVERSRLAASQADLVLLTIDATVGWTVEDSEIYQPIRHLPTILVINKIDLATPDLSQFPP 353

Query: 338 EYDHLI--SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
           E   ++  S+   +G+E L + I + I   K          ++R    L+++   L+   
Sbjct: 354 EIKGIVKTSAANHQGIEALESTILQGINQQKLTANNLDFAINQRQAAALTRSKIALQQVQ 413

Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   +D  LD    +LR A   LG+ITG    E +LD IFS+FCIGK
Sbjct: 414 ITITEDLPLDFWTIDLRSAIQVLGEITGEEITESVLDKIFSRFCIGK 460


>gi|205422374|sp|Q0KFG6|MNME_RALEH RecName: Full=tRNA modification GTPase mnmE
          Length = 475

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 159/478 (33%), Positives = 244/478 (51%), Gaps = 41/478 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   +  I A++T      I ++R+SGP    V   +C +    PR A+   F    G++
Sbjct: 1   MTAPQVPIAAIATAPGRGGIGVVRVSGPDVGPVMRSVCGQALK-PRHATYLPFLDGHGKV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRA 117
           +D GL + FP+P S+TGE+  E   HGG  V+  +L    +  +   LRLA PGEF+RRA
Sbjct: 60  IDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGDGIGLRLAEPGEFTRRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K+DL +AE++ADLI + TE   R +   M GE S+   Q +DK+ H+R  +EA LD
Sbjct: 120 FLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSNAIRQLVDKVIHLRMLVEATLD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EEE +      +    +  ++ ++S  ++Q + G ++R G  +V+ G  N GKSSL N
Sbjct: 180 FPEEE-IDFLEQSDARGQLATIRTELSGVLAQARQGALLREGLSVVLAGQPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEV 296
           ALA  ++AIVT I GTTRD +   + ++G  + I DTAG+RE   D VE+ GI+RT+  +
Sbjct: 239 ALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLREHAADEVERIGIERTWDAI 298

Query: 297 ENADLILLLKEINS-------------------------------KKEISFPKNIDFIFI 325
             AD++L L +                                   K    P   D +F 
Sbjct: 299 RRADIVLHLVDATDYLRHGLSETDDAIDDQLSGQLPPGSPIVRIVNKIDKAPAVGDVVFG 358

Query: 326 GTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           G +  + +        + IS+ TG G+E L  ++  ++  +      +  + +RHL  L 
Sbjct: 359 GNRPHVVAANGPNPTEIWISARTGAGIELLRRELLRLVGWQSGN-EGNFLARERHLTALR 417

Query: 385 QTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +L++A+     +   LD+ AE LRLA   L  ITG    + LL  IF++FCIGK
Sbjct: 418 NAQSHLDIAAEQAEHQAQALDLFAEELRLAQDCLNSITGEFTSDDLLGTIFTRFCIGK 475


>gi|90194122|gb|ABD92622.1| ThdF [Actinobacillus indolicus]
          Length = 436

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 240/437 (54%), Gaps = 29/437 (6%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            I I+R+SGP    V E +  K  P PR A    F   DG +LD+G+ + F +P SFTGE
Sbjct: 7   GIGILRVSGPLAADVAEAVLGKC-PKPRMADYLPFKDEDGTVLDQGIALFFKAPNSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L  + K+  +R+A  GEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQVILDLLLNRILKVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S      +D + ++R+++EA +DF +EE +   +  ++   LN+
Sbjct: 126 SEQAARSALKSLQGEFSHKINALVDNVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLNE 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+     +++   + K G I+R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTR
Sbjct: 185 II---TQLANVRQEAKQGSILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTDIAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           DVL   + ++G  + I DTAG+RE  D VEK GIKR + E+E AD +LL+ + N  +   
Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIKRAWDEIEQADHVLLMIDSNESQADH 301

Query: 316 F-----------PKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTGEGLEELINKI 358
           F           PKNI    I  K DL         T+ +  + +S+ T  G++ L   +
Sbjct: 302 FQQEWAEFLAKLPKNIPVTVIRNKVDLTGETESLVQTDNFTVIRLSAQTKVGVDLLREHL 361

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416
           K  +  +         + +RHL  L     +L+     L +   G +++AE LR+   +L
Sbjct: 362 KKSMGYQ-SSTEGGFIARRRHLVALETAAEHLQRGHVQLTQFYAG-ELLAEELRMVQNAL 419

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 420 SEITGQFTSDDLLGNIF 436


>gi|328865434|gb|EGG13820.1| GTP-binding protein 3 [Dictyostelium fasciculatum]
          Length = 640

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 165/492 (33%), Positives = 257/492 (52%), Gaps = 65/492 (13%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---------KKKPFPRKASLRYFFG 55
           K+TIFA+S+G+  + +++IR+SG S   V + +            K   PR A+L     
Sbjct: 95  KDTIFALSSGSNKAGVAVIRVSGRSSNDVLQRLTMFSSISGDGGTKTIVPRMATLSSIHH 154

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
              +  +DK +L+ FP P SFTGED  E HVHGG AVV+  L+ +A +P  R A  GEF+
Sbjct: 155 PQTKEQIDKAMLLWFPQPNSFTGEDVLELHVHGGRAVVHDTLDAIACVPGTRSAVAGEFT 214

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAF+N K+DL E E L+DL+ ++T  QRR+++  M G L+       ++L    ++ EA
Sbjct: 215 RRAFDNNKMDLSEVEGLSDLLDAQTNHQRRVALLQMQGSLAKFTSHLRNRLIRASAYTEA 274

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF ++ ++     +     I  +K  I  H++ G++GE +R G  I I+G  NAGKSS
Sbjct: 275 FIDFGDDAEIDPAVVETSKRAIREIKETIEGHLANGRIGERLREGASIAIVGPPNAGKSS 334

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N LA++  +IV+ IPGTTRDV+ + LD+ GY V I DTAGIR   D +E+EGI     
Sbjct: 335 LINILAQRRASIVSSIPGTTRDVVEVVLDIGGYPVVIGDTAGIRVGQDEIEQEGIVMAKE 394

Query: 295 EVENADLIL----------------------LLKEINSKKEISFPKNIDFIFIG-----T 327
             +++D+ +                      LL+ INS   I F K    +        +
Sbjct: 395 RFKDSDISICVFDSSSFFTSGQVGTIIIDPTLLELINSNTIIVFNKTDLLLNNNNDNKQS 454

Query: 328 KSDLYSTYTEEY------------DHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             D+ +    +             +H  IS  + +G+++L+  +++ L N F+      P
Sbjct: 455 WKDIKTNLLNQIQQQQQSNSTTTINHCEISCSSNQGIKDLLLVLENNLKNLFETSNSDEP 514

Query: 375 -----SHKRHLYHLSQTV-RYLEMASLNEKDCGLDII--AENLRLASVSLGKITGCVDVE 426
                 HK HL +  +++ R+L+        C  D++  AE LR A   +G I+  V+V+
Sbjct: 515 LLTRLRHKEHLRNCVESLDRFLDY-------CEYDVVIAAEELRSAIKEIGAISHHVNVD 567

Query: 427 QLLDIIFSKFCI 438
            LLD+IF  FCI
Sbjct: 568 DLLDVIFKDFCI 579


>gi|225554700|gb|EEH02995.1| tRNA modification GTPase GTPBP3 [Ajellomyces capsulatus G186AR]
          Length = 615

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 176/546 (32%), Positives = 274/546 (50%), Gaps = 116/546 (21%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-----GRI 60
           TI+A+ST    +AI+I+R+SGP+C Q+ + +C K+  P PR A+LR  +          I
Sbjct: 63  TIYALSTAPGRAAIAIVRVSGPACVQIYDALCPKRPLPNPRVAALRTLYDPSVPPSVNTI 122

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-----------MPNLRLAN 109
           LD+ +++ FP+P + TGED  E H+HGG AVV  +L  + +           MP++R A 
Sbjct: 123 LDRAVVLHFPAPNTVTGEDVLELHIHGGPAVVKAVLNAIPRCAGAFSNEKIAMPSIRYAE 182

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G SG L+  Y +W  +L + R
Sbjct: 183 PGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERWRQQLLYAR 242

Query: 170 SFIEADLDFSE----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
             +EA +DFSE    +E +++F S  +  ++  L   I+ HI     GE++R+G +I +L
Sbjct: 243 GEMEALIDFSEDQHFDESIEDFVSS-ITGEVRNLVRQINLHIENASKGELLRSGIRIALL 301

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI-- 283
           G  NAGKSSL N +  ++ AIV+   GTTRD++ + +D+ GY  K  D AG+R +D I  
Sbjct: 302 GAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGYFCKFGDMAGLR-SDHIAR 360

Query: 284 --------VEKEGIKRTFLEVENADLILL---LKEINSKKEISF---PKNID-------- 321
                   VE+EGI+R       +D++++   L+E ++   +     P+ +D        
Sbjct: 361 SGSMPIGAVEQEGIRRAKARALESDVVIVVLSLEESDNGTGVKLVLEPEVVDAVRSCIAL 420

Query: 322 ---FIFIGTKSDLYS--TYTEEYDH-LISSFTGE-------------------------- 349
               I    K D YS  TYT      L+ S T E                          
Sbjct: 421 EKHMIVAVNKFDKYSPTTYTARTQQELVDSLTEEISSVEPRLTQDQIFLISCREAENEVS 480

Query: 350 ----------GLEELINKIKSI-----LSN---KFKKLPF--SIPSHKRHLYHLSQTVRY 389
                      L ELI   K +     L N   +F KL +  S+    R   +L + V++
Sbjct: 481 KEADPGNIQKFLGELIRTFKRMSTPSELDNGNEQFDKLYWEDSLGVTHRQRSNLQKCVQH 540

Query: 390 L------------EMASLNEKDCGLDII--AENLRLASVSLGKITG---CVDVEQLLDII 432
           L              A+  + +   DI+  AE+LR A+  L KITG     DVE +L ++
Sbjct: 541 LNDFLSQTCQTPDNAANAEQIEVNFDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVV 600

Query: 433 FSKFCI 438
           F K+ +
Sbjct: 601 FEKYSL 606


>gi|307151569|ref|YP_003886953.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7822]
 gi|306981797|gb|ADN13678.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7822]
          Length = 458

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 160/459 (34%), Positives = 252/459 (54%), Gaps = 31/459 (6%)

Query: 6   ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56
           ETI A++T  +P   +I I+RLSG     +    F    K+ +    + R  +G      
Sbjct: 7   ETIAAIATAIVPQQGSIGIVRLSGTLALAIARTVFYAPGKQAW---ETHRILYGYIRHPQ 63

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G+++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ R
Sbjct: 64  SGQLIDEALLLLMLAPRSYTKEDVIEFHCHGGIIPVQQVLQ-LCLENGARLAQPGEFTLR 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AES+A+L++S++    ++++ G+ G+L+    Q       I + +EA +
Sbjct: 123 AFLNGRLDLTQAESVAELVNSQSVQASQIALAGLQGKLAHPIRQLRSNCLDILAEVEARI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF  EED+   +  E+   +  +  +++  ++    GE++R+G K+ I+G  N GKSSL 
Sbjct: 183 DF--EEDLPPLNEDEIKQHLAAVLIEVNQILATADRGELLRSGLKVAIVGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NA ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIRETDD VEK G++R+    
Sbjct: 241 NAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETDDRVEKIGVERSRHAA 300

Query: 297 ENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT--- 347
           E ADLILL  +  +      ++     K+   I +  K+DL    +  Y   I+S     
Sbjct: 301 EAADLILLTIDAQTGWTPEDEQIYQQVKHRPLILVINKTDLQEAKSVNYPSDITSVVETV 360

Query: 348 ---GEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401
               EG+++L   I  S+ S         I  ++R    L+Q    L+    ++N +   
Sbjct: 361 AAKNEGIDQLEKIILNSVQSGHLTVTNLEIAINQRQAAALTQASLSLQQVQETINNQ-LP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD    +LR A  +LG+ITG    E +LD IFS+FC+GK
Sbjct: 420 LDFWTIDLRSAIQALGEITGEEVTESVLDRIFSRFCLGK 458


>gi|171464336|ref|YP_001798449.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193874|gb|ACB44835.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 454

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 155/457 (33%), Positives = 255/457 (55%), Gaps = 20/457 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   K  I A++T    + + ++R+SG +   +   + +KK   PR+A+L       G+ 
Sbjct: 1   MMTRKLPIIAIATAPGKAGVGVVRISGQNLIDLTTALFQKKLS-PRQANLLTLSDEHGQT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRA 117
           +D+ + I F  P SFTGED  E   HGG  ++  +++   EL K   L +A PGEF+ RA
Sbjct: 60  IDQLIAIYFAGPASFTGEDVLELQCHGGPQLLELVMKRCLELGKNEGLVIAEPGEFTLRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           + N KIDL +AE++ADLI +++E   R +   + G  S      I+++T +R  +E+ LD
Sbjct: 120 YLNNKIDLAQAEAIADLIDAQSEAAVRGAACSLQGAFSDDINNLIEEITQLRILVESTLD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EEE ++   + +    ++ +K  + +  +  K G+I+R+G ++V+ G  N GKSSL N
Sbjct: 180 FPEEE-IEFLENAQARQRLVTVKEKLHTLRAGAKQGKILRDGVQLVLAGAPNVGKSSLIN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++VAIVT I GTTRD +   + ++G  + I DTAG+RET D+VE +GI+R++  + 
Sbjct: 239 RLVGEEVAIVTPIAGTTRDRVRESITIDGVPMHIMDTAGLRETADLVEAKGIERSWDSIR 298

Query: 298 NADLILLLKEINS-------KKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDH---LISS 345
            ADL++ L +  S       K +I    P     + +  K+DL S +++       LIS+
Sbjct: 299 LADLVIFLTDAQSGAQKDDLKTQILKELPSKCAVLEVVNKADLLSDHSKSPSTGALLISA 358

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL--NEKDCGLD 403
            TG G+E L  KI +++     +   +I + +RHL  + +   ++E +       +  L+
Sbjct: 359 KTGAGIELLKQKILALVGWSGPQ-EGAILARRRHLDCIERAAEHIERSEYFAANGNNSLE 417

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + AE L LA   LG+ITG +  + LL  IFS+FCIGK
Sbjct: 418 LFAEELSLAQKHLGEITGKLLPDDLLGKIFSQFCIGK 454


>gi|171316351|ref|ZP_02905571.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MEX-5]
 gi|171098480|gb|EDT43282.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MEX-5]
          Length = 464

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 157/464 (33%), Positives = 247/464 (53%), Gaps = 31/464 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T A    I ++R+S       +   + + +C ++   PR AS   F    G
Sbjct: 5   DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQRLA-PRHASYVPFLDEHG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 64  APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  +   +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLARIREQLVHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302

Query: 296 VENADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYST------YTEEYD-- 340
           +E AD++L L +    + ++ E+    FP  +  + +  K+DL          + E D  
Sbjct: 303 IERADVVLHLLDSRTGMTAEDEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPSAEGDLT 362

Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LN 396
             HL S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+    
Sbjct: 363 EVHL-SAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQATDHAE 420

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 421 QRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|115353264|ref|YP_775103.1| tRNA modification GTPase TrmE [Burkholderia ambifaria AMMD]
 gi|115283252|gb|ABI88769.1| tRNA modification GTPase trmE [Burkholderia ambifaria AMMD]
          Length = 489

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 246/466 (52%), Gaps = 35/466 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T A    I ++R+S       +   + + +C ++   PR AS   F    G
Sbjct: 30  DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQRLA-PRHASYVPFVDEHG 88

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 89  APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQPGEFTR 148

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +EA 
Sbjct: 149 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRMLVEAT 208

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 209 LDFPEEE-IDFLEAADARGKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 267

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ E
Sbjct: 268 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 327

Query: 296 VENADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYST------------YT 336
           +E AD++L L +    + +  E+    FP  +  + +  K+DL                T
Sbjct: 328 IERADVVLHLLDSRTGMTADDEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPAAAGDLT 387

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
           E +   +S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+  
Sbjct: 388 EVH---LSAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAADH 443

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 444 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 489


>gi|90194120|gb|ABD92621.1| ThdF [Actinobacillus pleuropneumoniae serovar 8 str. 405]
          Length = 436

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 156/437 (35%), Positives = 243/437 (55%), Gaps = 29/437 (6%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            +SI+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTGE
Sbjct: 7   GVSILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ + K+  +R+A  GEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQVILDILLKRILKIKGIRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LND
Sbjct: 126 SEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLND 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+   N +     QG    I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTTR
Sbjct: 185 IIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           DVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL+ +   +   +
Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEA 301

Query: 316 F-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINKI 358
           F           P+NI    I  K DL       +E D      +S+ T  G++ L   +
Sbjct: 302 FKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLREHL 361

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416
           K  +  +         + +RHL  L     +LE     L +   G +++AE LR+   +L
Sbjct: 362 KKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNAL 419

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 420 SEITGQFTSDDLLGNIF 436


>gi|332827207|gb|EGJ99981.1| tRNA modification GTPase mnmE [Dysgonomonas gadei ATCC BAA-286]
          Length = 463

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 168/469 (35%), Positives = 258/469 (55%), Gaps = 38/469 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGL--D 57
            E   I A+ST A    I+IIRLSG  C ++ EF+ K    KK   +KA+  +F  +  D
Sbjct: 2   QENNIIAAISTPAGVGGIAIIRLSGKGCIELTEFVFKPLGNKKLGEQKANTIHFGYIIKD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             +LD+ L+ VF +P SFTGED  E   HG + +   IL+ L       LA PGEF++RA
Sbjct: 62  STVLDEVLISVFKAPHSFTGEDVVEISCHGSVYIQQNILQLLIS-KGAALAQPGEFTQRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL +AES+ADLI+S +    RL+M  M G  S+   +   +L +  S IE +LD
Sbjct: 121 FLNGKMDLSQAESVADLIASSSAATHRLAMNQMRGGFSNKLIELRTELLNFASLIELELD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKS 233
           FSEE DV+ F+++E L +  +   DI  HI +     +LG  ++NG  + I+G +NAGKS
Sbjct: 181 FSEE-DVE-FANRERLKETAY---DIELHIRKLAESFELGNAVKNGIPVAIIGETNAGKS 235

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           +L N L  ++ AIV+DI GTTRDV+   ++++G   ++ DTAGIR+T D +E  GI+RTF
Sbjct: 236 TLLNLLLHEEKAIVSDIHGTTRDVIEDTINIQGLTFRLIDTAGIRDTTDEIESIGIERTF 295

Query: 294 LEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYST-YTEEYDHLI 343
            ++E A++IL + ++ +  E         +   KN   I +  K D+ S    +  + L+
Sbjct: 296 KKIEQANIILWITDVGTADEHIRDLAEKILPAIKNQKLILVFNKVDMISAERKDNKERLL 355

Query: 344 SS------FTGEGLEELINKIKSILSNKFKKLPF-----SIPSHKRHLYHLSQTVRYLEM 392
                   F     E+  N ++S+L  K   +P       I ++ RH   L   +  ++ 
Sbjct: 356 KEEIPDRIFISAKYEQGTNDLESLLV-KAANIPEIGEQDIIVTNMRHYAALENALTAIKR 414

Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                E     D +++++R     LG+ITG +  +++L  IF KFCIGK
Sbjct: 415 VGEGLELHLSGDFLSQDIRECMHYLGEITGQISTDEILGNIFGKFCIGK 463


>gi|172062136|ref|YP_001809788.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MC40-6]
 gi|205829123|sp|B1YQJ5|MNME_BURA4 RecName: Full=tRNA modification GTPase mnmE
 gi|171994653|gb|ACB65572.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MC40-6]
          Length = 464

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 246/466 (52%), Gaps = 35/466 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T A    I ++R+S       +   + + +C ++   PR AS   F    G
Sbjct: 5   DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQQLA-PRHASYVPFVDEHG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 64  APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302

Query: 296 VENADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYST------------YT 336
           +E AD++L L +    + +  E+    FP  +  + +  K+DL                T
Sbjct: 303 IERADVVLHLLDSRTGMTADDEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPAAAGDLT 362

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
           E +   +S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+  
Sbjct: 363 EVH---LSAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAADH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|330723738|gb|AEC46108.1| tRNA modification GTPase TrmE [Mycoplasma hyorhinis MCLD]
          Length = 444

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 151/444 (34%), Positives = 251/444 (56%), Gaps = 10/444 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           K+TI A+++G +  AISIIR+SGP  F     I K +     +     +   +G ++D+ 
Sbjct: 3   KDTIVAIASGQVNQAISIIRISGPEAFTTVAKIFKGRVGTTSREVTYGWIHNNGELIDEV 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F    +F GED+ E + HGG+   N ILE L   P++RLA  GEFSRR+F NGK+D
Sbjct: 63  LVLWFKGTNNFVGEDTVEINAHGGVLNTNLILELLLSQPHVRLAERGEFSRRSFLNGKMD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++A+++ DLI + T+ Q +LS++  SG+ S    + I+ L +I + IE ++D+ E +DV
Sbjct: 123 LIKAQAIHDLIMARTKKQAQLSIKQFSGKTSIFINELINDLLNIIAIIEVNIDYPEYDDV 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L  +  L       I   +   II  G K+ ++G  N GKSSL NAL ++D 
Sbjct: 183 EVLTTEVLLPKLEALLAKFEKTIEASERSRIIFEGIKVALVGTPNVGKSSLLNALIEQDK 242

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+D+ GTTRDV+     L   + K+ DTAG+R+  + +E+ GIK++  ++E A +++ 
Sbjct: 243 SIVSDVAGTTRDVVEASFVLSDIVFKLVDTAGVRKAKNKIEQIGIKKSLEQIEKASIVIH 302

Query: 305 LKEINSKKEISF-------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
           + +  +K+E  F        KN D+I +  K DL  +  +  D ++ S   + + +L + 
Sbjct: 303 IIDA-TKQENEFDKLIQEHSKNKDYIKVYNKKDLNPSNFDASDKILISAKHKDISQLESY 361

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSL 416
           +K    NK  +    I S+ R L  +     YL+ A L+ K+    DI+  +L  +   L
Sbjct: 362 MKKHFVNKISENE-EIISNTRSLSFIKSAFSYLKDAFLSLKNGFSPDIVIVDLTQSWKDL 420

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
             ITG +  + LLD IF+ FC+GK
Sbjct: 421 KTITGELTSDSLLDTIFANFCLGK 444


>gi|296273895|ref|YP_003656526.1| tRNA modification GTPase TrmE [Arcobacter nitrofigilis DSM 7299]
 gi|296098069|gb|ADG94019.1| tRNA modification GTPase TrmE [Arcobacter nitrofigilis DSM 7299]
          Length = 447

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 160/449 (35%), Positives = 247/449 (55%), Gaps = 20/449 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISIIRLSG     +   + K+    PR A+L   +  D  I+D+ L
Sbjct: 5   DTIAAIATANGIGSISIIRLSGKDALPLALTLSKRTNLNPRLATLSSIYNSDNEIIDEAL 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           LI F +P SFTGED  EF  HGGIA+ N IL EL K+   RLANPGEFS+RAF N KIDL
Sbjct: 65  LIYFKNPNSFTGEDIVEFQCHGGIAISNIILNELIKL-GARLANPGEFSKRAFLNNKIDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++A LI + +E   +L    + GEL++      + L  + ++ E  +D++E+ D+ 
Sbjct: 124 SKAEAIAKLIEARSEDAVKLLARQLKGELTNFVNDIREDLLFMLAYTEVSIDYAED-DLP 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +   +++   I  +   +S  +   K  E +  G+K+ I+G  N GKSSL N L   D A
Sbjct: 183 SDIFEQIEKKIEKIVVKLSETLESSKRREGLIEGFKVAIIGKPNVGKSSLLNKLLNFDRA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I++DI GTTRD +   + +  +++KI DTAGIRE  D +E+ GI+++   V  AD+I+ L
Sbjct: 243 IISDIAGTTRDTIEESVKIGTHIIKIVDTAGIREASDTIERIGIEKSLSAVNEADIIISL 302

Query: 306 ------------KEINSKKEISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGL 351
                       K +N   EI   +N + I +  K DL S +  T+  D  I   T   +
Sbjct: 303 FDNSKVCDDEDKKILNILDEI---ENKEKIIVLNKIDLESKFDKTQLKDEYIELSTKNSI 359

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
             L+ KI++IL N       ++ S KR +  + QT+ +++ A        L+  A N+  
Sbjct: 360 STLVKKIETILDNNSHDDDMTLIS-KRQVEAVEQTLYHVQEAKTPLMTGELEFFAHNIHE 418

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  ++  IT   + +Q+LD++F  FC+GK
Sbjct: 419 AIENISLITRPYENDQMLDVMFGAFCLGK 447


>gi|332976009|gb|EGK12880.1| tRNA modification GTPase [Psychrobacter sp. 1501(2011)]
          Length = 463

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 162/465 (34%), Positives = 255/465 (54%), Gaps = 36/465 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + IIRLSGP  + +   +  K    PR AS   F+     +LD+GL
Sbjct: 5   KTIAAIATPLGRGGVGIIRLSGPKAYDIACQLTGKDHFTPRLASFCRFYDDQRNVLDEGL 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +P SFTGED  E   HGG+ + N +L  + ++     A PGEFS RAFEN K+DL
Sbjct: 65  VLYFKAPYSFTGEDVIELQGHGGMILQNQLLARVFEL-GAHQAQPGEFSYRAFENDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           L+AE++AD I + +      ++  ++GE S+     ++ L  +R ++EA +DF +EEDV 
Sbjct: 124 LQAEAIADAIDATSAAAASSAIRSLTGEFSNKINDILEALIELRLYVEASIDFPDEEDVD 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S   + + +  +++ + + ++  + G+++R+G  +V+ G  NAGKSSL N+LA ++ A
Sbjct: 184 FLSDGVIESKLSRIQDRLKTILATAQQGQLLRDGVHVVLAGRPNAGKSSLLNSLAGQERA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTD+ GTTRD L   + L G  + ++DTAG+R+T D VE+ GI+R    +  ADL+LL+
Sbjct: 244 IVTDVAGTTRDTLQETIVLNGLTIHLTDTAGLRDTTDAVERIGIERARTAIHQADLLLLV 303

Query: 306 KEINSKKE------------ISFPKNID---FIFIGTKSDLYSTYTEE----------YD 340
            +++ +               S   N D    + IG K DL      +          Y+
Sbjct: 304 HDLSKQANPLELATELFGTTASGTPNFDPAKLLLIGNKRDLVEQQQSQNLSDKVDVSGYE 363

Query: 341 HL-ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
            + +S  T EG++ LI    + L +K  F     S+ +  RHL  L +T ++L  A L  
Sbjct: 364 QVNVSCETSEGIDCLI----ATLCDKVGFHPPENSLIARTRHLDALRRTQQHLNDAHLQL 419

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            E   G +++AE+LR    SLG+ITG    + LL  IF  FCIGK
Sbjct: 420 VEYQAG-ELVAESLRQGQYSLGEITGEFSADDLLGRIFGSFCIGK 463


>gi|205829166|sp|Q0BAQ4|MNME_BURCM RecName: Full=tRNA modification GTPase mnmE
          Length = 464

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 246/466 (52%), Gaps = 35/466 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T A    I ++R+S       +   + + +C ++   PR AS   F    G
Sbjct: 5   DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQRLA-PRHASYVPFVDEHG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 64  APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302

Query: 296 VENADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYST------------YT 336
           +E AD++L L +    + +  E+    FP  +  + +  K+DL                T
Sbjct: 303 IERADVVLHLLDSRTGMTADDEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPAAAGDLT 362

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
           E +   +S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+  
Sbjct: 363 EVH---LSAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAADH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|323527917|ref|YP_004230070.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1001]
 gi|323384919|gb|ADX57010.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1001]
          Length = 464

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 246/465 (52%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G +           +   PR AS   F   
Sbjct: 2   LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAPPLMQALTGQTLAPRHASYVPFLDG 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF
Sbjct: 62  SGNALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLLLQRCIDAGRAFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++++  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSRDIHALVEEVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF EEE +    + +    +  ++  ++S +++ + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPEEE-IDFLEAADARGKLARIRERLASVLTEARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R+T+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTE------EYD 340
            E+E AD++L L +    + ++ E     FP  +  + +  K+DL     E      ++D
Sbjct: 301 SEIERADVVLHLLDARTGMTAEDETIARRFPAGVPVVRVLNKTDLVGLPPETRALDADFD 360

Query: 341 H---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--L 395
                +S+  G+G+  L  ++  I   +       + + +RHL  L     +L  A+   
Sbjct: 361 LSEVRLSAKQGDGVGLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAEEHLATAAAHA 419

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464


>gi|304373365|ref|YP_003856574.1| tRNA modification GTPase mnmE [Mycoplasma hyorhinis HUB-1]
 gi|304309556|gb|ADM22036.1| tRNA modification GTPase mnmE [Mycoplasma hyorhinis HUB-1]
          Length = 444

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 151/444 (34%), Positives = 251/444 (56%), Gaps = 10/444 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           K+TI A+++G +  AISIIR+SGP  F     I K +     +     +   +G ++D+ 
Sbjct: 3   KDTIVAIASGQVNQAISIIRISGPEAFATVAKIFKGRVGTTSREVTYGWIHNNGELIDEV 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F    +F GED+ E + HGG+   N ILE L   P++RLA  GEFSRR+F NGK+D
Sbjct: 63  LVLWFKGTNNFVGEDTVEINAHGGVLNTNLILELLLSQPHVRLAERGEFSRRSFLNGKMD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++A+++ DLI + T+ Q +LS++  SG+ S    + I+ L +I + IE ++D+ E +DV
Sbjct: 123 LIKAQAIHDLIMARTKKQAQLSIKQFSGKTSIFINELINDLLNIIAIIEVNIDYPEYDDV 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L  +  L       I   +   II  G K+ ++G  N GKSSL NAL ++D 
Sbjct: 183 EVLTTEVLLPKLEALLAKFEKTIEASERSRIIFEGIKVALVGTPNVGKSSLLNALIEQDK 242

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+D+ GTTRDV+     L   + K+ DTAG+R+  + +E+ GIK++  ++E A +++ 
Sbjct: 243 SIVSDVAGTTRDVVEASFVLSDIVFKLVDTAGVRKAKNKIEQIGIKKSLEQIEKASIVIH 302

Query: 305 LKEINSKKEISF-------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
           + +  +K+E  F        KN D+I +  K DL  +  +  D ++ S   + + +L + 
Sbjct: 303 IIDA-TKQENEFDKLIQEHSKNKDYIKVYNKKDLNPSNFDASDKILISAKHKDISQLESY 361

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSL 416
           +K    NK  +    I S+ R L  +     YL+ A L+ K+    DI+  +L  +   L
Sbjct: 362 MKKHFVNKISENE-EIISNTRSLSFIKSAFSYLKDAFLSLKNGFSPDIVIVDLTQSWKDL 420

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
             ITG +  + LLD IF+ FC+GK
Sbjct: 421 KTITGELTSDSLLDTIFANFCLGK 444


>gi|157412546|ref|YP_001483412.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9215]
 gi|166991113|sp|A8G2J5|MNME_PROM2 RecName: Full=tRNA modification GTPase mnmE
 gi|157387121|gb|ABV49826.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus str. MIT 9215]
          Length = 460

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 170/447 (38%), Positives = 242/447 (54%), Gaps = 35/447 (7%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPSPE 73
            ++IIR+SG      C+ I + K  +  + S R F G        + +D+ L+ V  SP 
Sbjct: 24  GVAIIRVSGKDSINSCKKIVQTKSKYAWE-SHRVFHGFIQENKQNKFIDEVLISVMKSPN 82

Query: 74  SFTGEDSAEFHVHGGIAVVNGILE-ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
           SFTGED  E H HGGI +VN +L+  L+    +RLANPGEFS+RAF NGKIDL +AES+ 
Sbjct: 83  SFTGEDVVELHCHGGIIIVNKVLKILLSSNSRVRLANPGEFSQRAFLNGKIDLTQAESIN 142

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
            LI++       L+  G+ GE+        + L +    IEA +DF  EED  +F   + 
Sbjct: 143 QLINASNTRSAELAFSGIQGEIKKKINDIKNDLINQLCEIEARVDF--EEDFTDFDYTKY 200

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           L +I  +K  I   I   K    I NG  I ++G +N GKSSL N LAKK+ AIVT+IPG
Sbjct: 201 LKNIKKVKEKIELLIENAKRNSYIHNGISIALIGKTNVGKSSLLNLLAKKEKAIVTNIPG 260

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI---- 308
           TTRDV+ I+L +    +KI DTAGIRET + +E+ GIK++F +++ +D I+ +  +    
Sbjct: 261 TTRDVIEINLTINDIPMKIIDTAGIRETSEQIERIGIKKSFRKIKESDFIIYIYSLEEGF 320

Query: 309 --NSKKEIS-FPKNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEELINKIKS 360
               KK I   PK      +G K DL        +      L+S    +G   LI+ I  
Sbjct: 321 NEEDKKIIQEIPKEKLITILGNKKDLIDCKNINSNELKNTILMSIKNNDGERLLIDTI-- 378

Query: 361 ILSNKFKKLP-FSIPSHKRHLYHLSQTVRYLEMASLNEKD------CGLDIIAENLRLAS 413
           I     K++   +I  ++RHL +LS       +++LN+ D         D+++  LR   
Sbjct: 379 IKKCGLKQVENINIFLNERHLANLSAC-----LSNLNDTDEIIKNKLPFDLLSIELRDGI 433

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L KITG    E+LLD IFSKFCIGK
Sbjct: 434 QNLSKITGQELTEELLDNIFSKFCIGK 460


>gi|150019907|ref|YP_001312161.1| tRNA modification GTPase TrmE [Clostridium beijerinckii NCIMB 8052]
 gi|189036196|sp|A6M3M5|MNME_CLOB8 RecName: Full=tRNA modification GTPase mnmE
 gi|149906372|gb|ABR37205.1| tRNA modification GTPase TrmE [Clostridium beijerinckii NCIMB 8052]
          Length = 462

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 160/470 (34%), Positives = 273/470 (58%), Gaps = 41/470 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD- 57
            E +TI A++T      +SIIR+SG +  ++   I   +  +     +  +++Y   +D 
Sbjct: 2   KEFDTICAIATPIGEGGVSIIRISGENVLKIASKIFTPRNKYDIESMKTYTMKYGNIVDL 61

Query: 58  ---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                I+D+ +L    +P S+TGE+  E + HGG+   N +L+++ K    RLA PGEF+
Sbjct: 62  ENKKEIIDEVILSYMKAPRSYTGENVVEINCHGGVISTNSVLDQVIK-AGARLAEPGEFT 120

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG+IDL +AE++ D+I+++TE+  + +M    G LS    +    L ++ + IE 
Sbjct: 121 KRAFLNGRIDLSQAEAVMDIITAKTELSMKAAMIQSKGALSKEINELRGYLLNVLALIEY 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLK---------NDISSHISQGKLGEIIRNGYKIVIL 225
            +DF+E+++       ++++D L L+         + I + +S    G+I+R+G  IVI+
Sbjct: 181 AVDFTEDDE-------DIVDDNLILQIKDGIENTNSKIETLLSNADAGKIVRDGLNIVIV 233

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  N GKSSL NAL +++ AIVTD+PGTTRD++   ++L+G  VKI+DTAGIR+T+D+VE
Sbjct: 234 GKPNVGKSSLLNALLRENRAIVTDVPGTTRDIIEEYINLDGIPVKITDTAGIRDTEDVVE 293

Query: 286 KEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE- 338
           K G++++  ++E ADLI+L+ + +        + I+  KN  +I +  K DL     +E 
Sbjct: 294 KIGVEKSKEKIEEADLIILMLDASRYIDEEDSRIINKIKNRKYIVLLNKMDLKDIKIQEE 353

Query: 339 -YDHL-----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
              +L     IS+ TG+G++ L +++K +  N        I S+ RH   L +++   +M
Sbjct: 354 ILKNLSNIINISAKTGQGIDILKDEVKKLFFNGEISSESLIISNARHKQALYKSLENCKM 413

Query: 393 A--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   +N  +  LD+I+  +  A  +LG+ITG    E LL+ IFS+FC+GK
Sbjct: 414 ALDKINANEY-LDLISIYITAAMKALGEITGDELEEDLLNKIFSEFCVGK 462


>gi|218437570|ref|YP_002375899.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7424]
 gi|218170298|gb|ACK69031.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7424]
          Length = 458

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 169/464 (36%), Positives = 254/464 (54%), Gaps = 41/464 (8%)

Query: 6   ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----D 57
           ETI A++T  +P   +I I+RLSG     +    F    K+ +    S R  +G      
Sbjct: 7   ETIAAIATAIVPQQGSIGIVRLSGAKALDIARTLFHAPGKQVW---ESHRILYGYIRHPQ 63

Query: 58  GRIL-DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            +IL D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ R
Sbjct: 64  SQILIDEALLLLMFAPRSYTKEDVIEFHCHGGIIPVQQVLQ-LCLEQGARLAQPGEFTLR 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AES+A+L++S++    ++++ G+ G+L+    Q       I + +EA +
Sbjct: 123 AFLNGRIDLTKAESVAELVNSQSVQASQVALAGLEGKLAHPIRQLRSTCLDILAEVEARI 182

Query: 177 DFSE------EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           DF E      EED+     K+ L ++L   N I   ++  + GE++RNG K+ I+G  N 
Sbjct: 183 DFEEDLPPLDEEDI-----KQRLTEVLVEVNQI---LATAERGELLRNGLKVAIVGRPNV 234

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSL NA ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIRET D VEK G++
Sbjct: 235 GKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETQDRVEKIGVE 294

Query: 291 RTFLEVENADLILLLKEINS-----KKEI-SFPKNIDFIFIGTKSDLYST----YTEEYD 340
           R+    + ADLILL  +  +      +EI    K+   I I  K+DL S     Y  E  
Sbjct: 295 RSRQAAQRADLILLTIDAQTGWTGEDEEIYQQVKHRPLILIINKTDLASADTINYPWEIT 354

Query: 341 HLISSFTG--EGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
            ++++     EG+E+L   I  S+ + K          ++R    L++T   LE      
Sbjct: 355 QIVTTVAAKSEGIEDLEQMILNSVQAGKLTGANLEFAINQRQAAALTRTSVALEQVQDTI 414

Query: 398 KD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           K+   LD    +LR A  +LG++TG    E +L+ +FS+FCIGK
Sbjct: 415 KNQLPLDFWTIDLRSAIQALGEVTGEEVTESILNRVFSRFCIGK 458


>gi|259148601|emb|CAY81846.1| Mss1p [Saccharomyces cerevisiae EC1118]
          Length = 526

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 178/497 (35%), Positives = 262/497 (52%), Gaps = 65/497 (13%)

Query: 4   EKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGR-- 59
           ++ TI+A+ST A   SAI+IIR+SG    +     +     P  RKA LR  +       
Sbjct: 35  QQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSCSV 94

Query: 60  ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103
                     +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  +       
Sbjct: 95  KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
           ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W +
Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLND----ILFLKNDISSHISQGKLGEIIRNG 219
            +    + + A +DF+++   +  ++ E+ +D    I+ L++ I + + + +   I++NG
Sbjct: 215 TIIENMAQLTAIIDFADDNSQEIQNTDEIFHDVEKNIICLRDQIVTFMQKVEKSTILQNG 274

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAGIRE
Sbjct: 275 IKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIRE 334

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIFIG 326
            + D +E  GI R   +   +DL L + +     ++  P++I              I + 
Sbjct: 335 KSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKL-LPEDILAHLSSKTFGNKRIIIVV 393

Query: 327 TKSDLYST--YTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            KSDL S    T+  + L            +S  T EG+E LI    S L++ F+ L  S
Sbjct: 394 NKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLI----STLTSNFESLSQS 449

Query: 373 ------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CV 423
                 +   KR    L   V Y        KD   DI+   ENLR AS  + KITG  +
Sbjct: 450 SADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAI 509

Query: 424 DVEQLLDIIFSKFCIGK 440
            +E++LD +FSKFCIGK
Sbjct: 510 GIEEILDSVFSKFCIGK 526


>gi|254582943|ref|XP_002499203.1| ZYRO0E06446p [Zygosaccharomyces rouxii]
 gi|238942777|emb|CAR30948.1| ZYRO0E06446p [Zygosaccharomyces rouxii]
          Length = 506

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 160/484 (33%), Positives = 265/484 (54%), Gaps = 54/484 (11%)

Query: 7   TIFAVSTG-ALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           TI+A+ST     SAI+++R+SG  S +   +    +KK   R+  LR  +G    +LDK 
Sbjct: 27  TIYALSTAPGTKSAIAVVRISGTHSKYVYHQLNNSEKKLIHRRTLLRNLYGPGKNLLDKA 86

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFSRRAF 118
           L + F SP+S+TGED  E H+HGG AV   +L  +  + +      +R A PGEF++RAF
Sbjct: 87  LTLFFDSPKSYTGEDLLELHIHGGKAVTGSVLNAIGSLNDRNSGIEIRYALPGEFTQRAF 146

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           +NGKIDL+E E + +LI +ETE QRR ++   +G   +L+  W DK+ +  + + A +DF
Sbjct: 147 QNGKIDLIEVEGIRELIDAETETQRRCALSSFNGMNKNLFMLWRDKIVNNIAQLTAIIDF 206

Query: 179 SEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
            E+ ++++ ++  + V ++++ LK +I+  I + +   I+++G K+V+LG  NAGKSSL 
Sbjct: 207 GEDTEIEDTNNLLQLVKHNMVQLKQEINQFIQKIEKTSILQSGVKVVLLGPPNAGKSSLI 266

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLE 295
           N+++  DV+I++  PGTTRD +   +D+ GY V ISDTAGIR  + D +E  GI+R   +
Sbjct: 267 NSISNDDVSIISHTPGTTRDTVEASIDVNGYKVTISDTAGIRSHSSDEIELLGIERAIKK 326

Query: 296 VENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDLYSTYTEE---YDHL 342
            E  DL LL+ +  +K  I+          + +  +F+ I  K DL +   +     D L
Sbjct: 327 SEQCDLCLLIVDPLNKPLINEDLTQMIQSMYKEGKEFVIIVNKQDLLTDENQSKSVMDAL 386

Query: 343 ------------ISSFTGEGLEELINKIKSILSNKFKKL--------PFSIPSHKRHLYH 382
                       +S  T EG+E L+ ++  I    F++L        P       + + H
Sbjct: 387 REKFGDKFPIITVSCKTQEGIEPLVKQLTQI----FQRLSETSDESDPIIASRRVKEILH 442

Query: 383 LSQTVRYLEMASLNEKDCGLD-----IIAENLRLASVSLGKITG-CVDVEQLLDIIFSKF 436
                         + + G D     + +E+L  A+  +GKITG  V +E++L ++F+ F
Sbjct: 443 SDVLYGIDSFFVTTDSEIGGDSYDVVMASEHLSHAADGIGKITGDAVGIEEVLGVVFANF 502

Query: 437 CIGK 440
           C+GK
Sbjct: 503 CVGK 506


>gi|301311540|ref|ZP_07217467.1| tRNA modification GTPase TrmE [Bacteroides sp. 20_3]
 gi|300830626|gb|EFK61269.1| tRNA modification GTPase TrmE [Bacteroides sp. 20_3]
          Length = 461

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 158/464 (34%), Positives = 252/464 (54%), Gaps = 35/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRY--FFGLDGR 59
           TI A+ST      I++IR+SGP  F++C+ I + KK        +  +L Y    G +  
Sbjct: 3   TICAISTAPGVGGIAVIRVSGPDAFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  VF +P SFTGED+ E   HG   +   IL+ L      R+A PGE+++RAF 
Sbjct: 63  TIDEVIAAVFRAPHSFTGEDTVEITCHGSTYIQQQILQSLIS-SGCRIAQPGEYTQRAFM 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S +  Q RL++  M G  S    +  ++L H  S +E +LDFS
Sbjct: 122 NGKMDLSQAEAVADLIASTSAGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           + E+++ F+ +  L  +      + S ++Q   +G  I+NG  + I+G +NAGKS+L NA
Sbjct: 182 DHEELE-FADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRDV+   +++ G L +  DTAGIRET D +E  GI+R+F  ++ 
Sbjct: 241 LLNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETSDTIEALGIERSFKALDQ 300

Query: 299 ADLILLLKEINSK--------KEISFPK--NIDFIFIGTKSDL--------YSTYTEEYD 340
           A +++L+ ++           +EI+ P+  N   I    K D+        +S  TE + 
Sbjct: 301 AQIVILMYDLTRDLKDFEAFYQEIA-PRLTNKSVILAMNKCDVLPTSSLPTFSFPTEGWH 359

Query: 341 HLISSFTGE----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
            +  S  G+     L++L+ ++ SI +     +  +   H   L H  + +  ++   LN
Sbjct: 360 QIAISAKGKLHIAELQQLLTEVSSIPTLHQSDIIVTNARHFEALTHALEAIHRVQ-EGLN 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G D I+++LR     L  I G V  +Q+L  IF  FCIGK
Sbjct: 419 SSLSG-DFISQDLRECIFHLSDIVGEVTTDQVLGNIFQHFCIGK 461


>gi|172039509|ref|YP_001806010.1| tRNA modification GTPase TrmE [Cyanothece sp. ATCC 51142]
 gi|171700963|gb|ACB53944.1| tRNA modification GTPase [Cyanothece sp. ATCC 51142]
          Length = 460

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 169/469 (36%), Positives = 257/469 (54%), Gaps = 41/469 (8%)

Query: 1   MNHEKETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL 56
           M  + ETI A++T  +P   +I IIRLSG     + +  FI   K+ +    S R  +G 
Sbjct: 4   MITQGETIAAIATAIVPQQGSIGIIRLSGNKALNIAQTLFIAPGKQKW---ESHRILYGY 60

Query: 57  -----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
                  +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L       LA PG
Sbjct: 61  IRHPQTEQVIDEALLLMMLAPRSYTREDVIEFHCHGGIMPVQQVLQ-LCLEQGAILAQPG 119

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH---- 167
           EF+ RAF NG+IDL +AES+ +L+S+ ++   ++++ G+ G+L+    Q I  L H    
Sbjct: 120 EFTLRAFLNGRIDLTQAESIRELVSARSQQASQMALAGLQGKLA----QPIQTLRHHCLD 175

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           I + IEA +DF  EED+       +   +  +     S ++  + GE++RNG K+ I+G 
Sbjct: 176 ILAEIEARIDF--EEDLPPLDENAISQGLKSILEQFESILNTAEQGELLRNGLKVAIVGR 233

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKSSL NA ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIR+T D VEK 
Sbjct: 234 PNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRQTTDQVEKI 293

Query: 288 GIKRTFLEVENADLILL-----LKEINSKKEISFP-KNIDFIFIGTKSDL----YSTYTE 337
           G++R+ L    ADL+LL     +   +   EI  P +++  I +  K DL     S +  
Sbjct: 294 GVERSRLAASQADLVLLTIDATVGWTSQDSEIYQPIRHLPVILVINKIDLATPNLSQFPP 353

Query: 338 EYDHLI--SSFTGEGLEELINKI-KSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLEM 392
           E   ++  S+   +G+E L   I K+I   K     L F+I  ++R    L++    L+ 
Sbjct: 354 EITEIVKTSAANHQGIEALEAAILKAINQQKLTANNLDFAI--NQRQSAALTRAKIALQQ 411

Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +   +D  LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 412 VQITIAEDLPLDFWTIDLRSAIQALGEITGEEITESVLDKIFSRFCIGK 460


>gi|187777372|ref|ZP_02993845.1| hypothetical protein CLOSPO_00928 [Clostridium sporogenes ATCC
           15579]
 gi|187774300|gb|EDU38102.1| hypothetical protein CLOSPO_00928 [Clostridium sporogenes ATCC
           15579]
          Length = 461

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 166/469 (35%), Positives = 264/469 (56%), Gaps = 42/469 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFFG 55
           E +TI AV+T      ISIIR+SG     +   I + K        KP+    S+RY F 
Sbjct: 3   EFDTIAAVATPLGEGGISIIRISGDKSLDIVSSIFRGKNDRLLDDIKPY----SMRYGFI 58

Query: 56  LDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
           ++     I+D+ L+     P SFT ED+ E + HGG+     IL+EL K    RLA PGE
Sbjct: 59  IEKESKEIIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIK-SGARLAEPGE 117

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NG+IDL +AE++ D+I S+T++  + +++   G LS       +K+  I + I
Sbjct: 118 FTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNKMIKIIAHI 177

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +D+ E+ D++  + +++  D+  + N I + IS  + G+I+R G   VI+G  N GK
Sbjct: 178 EATVDYPED-DLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVGK 236

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NAL  ++ AIVT+IPGTTRDV+   ++++G  +KI DTAGIRET+D+VEK G++++
Sbjct: 237 SSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVEKS 296

Query: 293 FLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
             ++  ADL++ + +++ K +      ++F KN  +I +  KSDL     EE +H I   
Sbjct: 297 KEKIAEADLVIFMLDLSRKIDEEDIEIMNFIKNKKYIVLLNKSDLNKDLNEE-NHFIKGL 355

Query: 347 -----------TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT----VRYLE 391
                         GL EL   IK +  +   K    I ++ RH   L ++    ++ +E
Sbjct: 356 DSKYIIRTSVKNNSGLNELKECIKDLFFSGEIKSDEIIVTNARHQEALIRSKESCIQAIE 415

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             S    +  +D+ + ++R A   LG+ITG    E ++D IFS+FC+GK
Sbjct: 416 TLS---DEISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461


>gi|289667654|ref|ZP_06488729.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 446

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 153/450 (34%), Positives = 247/450 (54%), Gaps = 14/450 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +   +   PR A    F    G +
Sbjct: 1   MSSSSSTIVAIASAAGIGGVGIVRLSGPQSVQIVAQLGIARLQ-PRHAHYARFRDAQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  VDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       D LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSRRVDAVADTLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  +      +V + +   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 EP-LDTLGGNQVRDGLTQARTLLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+RE  D +E+EG++R   E+E AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDAIEREGMRRARAELERAD 297

Query: 301 LILLL---KEINSKKEISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGL 351
           L L++   ++  + +E +    ID +    +I  K DL S     +    ++S+ TG+GL
Sbjct: 298 LALVVLDARDPQAARE-AIGDAIDAVPRQLWIHNKCDLLSDAVPLDANAIVVSAVTGQGL 356

Query: 352 EELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           E+L  +++ + L +  + +     +  RH+  L +  +++++A L      L++ AE LR
Sbjct: 357 EQLHIRLRELALGDGVESVDGEFFARTRHVEALRRAEQHVDIADLELGFEQLELAAEELR 416

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 417 LAHEALGEITGKISADDLLGKIFSSFCIGK 446


>gi|151946184|gb|EDN64415.1| mitochondrial splicing system relatd protein [Saccharomyces
           cerevisiae YJM789]
          Length = 526

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 179/497 (36%), Positives = 263/497 (52%), Gaps = 65/497 (13%)

Query: 4   EKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGR-- 59
           ++ TI+A+ST A   SAI+IIR+SG    +     +     P  RKA LR  +       
Sbjct: 35  QQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSCSV 94

Query: 60  ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103
                     +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  +       
Sbjct: 95  KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
           ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W +
Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214

Query: 164 KLTHIRSFIEADLDFSEE--EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNG 219
            +    + + A +DF+++  +++QN       V  +I+ L++ I + + + +   I++NG
Sbjct: 215 TIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTILQNG 274

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAGIRE
Sbjct: 275 IKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIRE 334

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIFIG 326
            + D +E  GI+R   +   +DL L + +     ++  P++I              I + 
Sbjct: 335 KSSDKIEMLGIERAKKKSVQSDLCLFIVDPTDLSKL-LPEDILAHLSSKTFGNKRIIIVV 393

Query: 327 TKSDLYST--YTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            KSDL S    T+  + L            +S  T EG+E LI    S L++ F+ L  S
Sbjct: 394 NKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLI----STLTSNFESLSQS 449

Query: 373 ------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CV 423
                 +   KR    L   V Y        KD   DI+   ENLR AS  + KITG  +
Sbjct: 450 SADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAI 509

Query: 424 DVEQLLDIIFSKFCIGK 440
            +E++LD +FSKFCIGK
Sbjct: 510 GIEEILDSVFSKFCIGK 526


>gi|124269008|ref|YP_001023012.1| tRNA modification GTPase TrmE [Methylibium petroleiphilum PM1]
 gi|124261783|gb|ABM96777.1| putative thiophene and furan oxidation protein [Methylibium
           petroleiphilum PM1]
          Length = 480

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 151/472 (31%), Positives = 237/472 (50%), Gaps = 35/472 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     + E +C +    PR A    F    G  
Sbjct: 12  LPRHHDPIVAIATAPGRGAVGIVRVSGRGLGALIEAVCGRALQ-PRHAHYGPFLDAQGEA 70

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGG-------------IAVVNGILEELAKMPNLRL 107
           +D+GL + FP+P S+TGE+  E   HGG              A        L ++  LR+
Sbjct: 71  IDQGLALHFPAPHSYTGEEVLELQAHGGPVLLQLLLARCLEAAAQPDARSGLPRLRGLRV 130

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEF+ RAF N K+DL +AE++ADLI + TE   R +   ++G  S       D+L  
Sbjct: 131 AEPGEFTERAFLNDKLDLAQAEAVADLIDASTEAAARSAGRALAGAFSQQVDTLRDRLIE 190

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA LDF EEE +      +    +  +   + + +++ K G ++R G ++V+ G 
Sbjct: 191 LRMLVEATLDFPEEE-IDFLEKADARGRLARIAEALDAVLARAKQGALLREGLRVVLAGQ 249

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---V 284
            N GKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R  DD    V
Sbjct: 250 PNVGKSSLLNALAGAELAIVTPIAGTTRDKVAETIQIEGVPLHVVDTAGLRAEDDARDEV 309

Query: 285 EKEGIKRTFLEVENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYS 333
           E+ G++R++  +  AD ++ L ++    +  +           P  +  + +  K+D  +
Sbjct: 310 ERIGMQRSWGAIGEADAVIFLHDLTRAGDPGYDAAERDIEQRLPAGVHVLDVHNKADAAA 369

Query: 334 TYTEEYDHL---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                       +S+ TGEGL+ L  ++  +   +       I +  RHL  L  T  +L
Sbjct: 370 AGAAALAPQALRLSARTGEGLDTLRRRLLQLAGWQAGSEGVFI-ARTRHLQALQATAEHL 428

Query: 391 EMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             A    +  D  LD++AE LRLA  +LG ITG    ++LL  IFS+FCIGK
Sbjct: 429 VRARQLADRADAALDLLAEELRLAHDALGAITGRYTPDELLGDIFSRFCIGK 480


>gi|205422403|sp|A2SMI8|MNME_METPP RecName: Full=tRNA modification GTPase mnmE
          Length = 471

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 151/472 (31%), Positives = 237/472 (50%), Gaps = 35/472 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     + E +C +    PR A    F    G  
Sbjct: 3   LPRHHDPIVAIATAPGRGAVGIVRVSGRGLGALIEAVCGRALQ-PRHAHYGPFLDAQGEA 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGG-------------IAVVNGILEELAKMPNLRL 107
           +D+GL + FP+P S+TGE+  E   HGG              A        L ++  LR+
Sbjct: 62  IDQGLALHFPAPHSYTGEEVLELQAHGGPVLLQLLLARCLEAAAQPDARSGLPRLRGLRV 121

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEF+ RAF N K+DL +AE++ADLI + TE   R +   ++G  S       D+L  
Sbjct: 122 AEPGEFTERAFLNDKLDLAQAEAVADLIDASTEAAARSAGRALAGAFSQQVDTLRDRLIE 181

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA LDF EEE +      +    +  +   + + +++ K G ++R G ++V+ G 
Sbjct: 182 LRMLVEATLDFPEEE-IDFLEKADARGRLARIAEALDAVLARAKQGALLREGLRVVLAGQ 240

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---V 284
            N GKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R  DD    V
Sbjct: 241 PNVGKSSLLNALAGAELAIVTPIAGTTRDKVAETIQIEGVPLHVVDTAGLRAEDDARDEV 300

Query: 285 EKEGIKRTFLEVENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYS 333
           E+ G++R++  +  AD ++ L ++    +  +           P  +  + +  K+D  +
Sbjct: 301 ERIGMQRSWGAIGEADAVIFLHDLTRAGDPGYDAAERDIEQRLPAGVHVLDVHNKADAAA 360

Query: 334 TYTEEYDHL---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                       +S+ TGEGL+ L  ++  +   +       I +  RHL  L  T  +L
Sbjct: 361 AGAAALAPQALRLSARTGEGLDTLRRRLLQLAGWQAGSEGVFI-ARTRHLQALQATAEHL 419

Query: 391 EMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             A    +  D  LD++AE LRLA  +LG ITG    ++LL  IFS+FCIGK
Sbjct: 420 VRARQLADRADAALDLLAEELRLAHDALGAITGRYTPDELLGDIFSRFCIGK 471


>gi|254251057|ref|ZP_04944375.1| hypothetical protein BDAG_00227 [Burkholderia dolosa AUO158]
 gi|124893666|gb|EAY67546.1| hypothetical protein BDAG_00227 [Burkholderia dolosa AUO158]
          Length = 495

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 248/465 (53%), Gaps = 33/465 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T A    I ++R+S       +   + + +C ++   PR AS   F    G
Sbjct: 36  DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQRLA-PRHASYVPFLDAHG 94

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 95  APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTR 154

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      +D + ++R  +EA 
Sbjct: 155 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDHVINLRMLVEAT 214

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 215 LDFPEEE-IDFLEAADARGKLAKIREQLTHVLGDARQGALLREGLSVVLAGQPNVGKSSL 273

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RETDD VE+ GI RT+ E
Sbjct: 274 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETDDEVERIGIARTWSE 333

Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLY---------STYTE 337
           +E AD++L L  ++S+  ++         FP  +  + +  K+DL          +   +
Sbjct: 334 IERADVVLHL--LDSRTGMTADDERIAARFPAGVPVVRVLNKTDLTGVPACVEHPAAEGD 391

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--L 395
             D  +S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+   
Sbjct: 392 LTDVHLSAKRGDGIDLLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQAHLAQAADHA 450

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 451 EQRAQSLDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 495


>gi|323336238|gb|EGA77509.1| Mss1p [Saccharomyces cerevisiae Vin13]
          Length = 526

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 177/497 (35%), Positives = 262/497 (52%), Gaps = 65/497 (13%)

Query: 4   EKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGR-- 59
           ++ TI+A+ST A   SAI+IIR+SG    +     +     P  RKA LR  +       
Sbjct: 35  QQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSCSV 94

Query: 60  ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103
                     +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  +       
Sbjct: 95  KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
           ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W +
Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLND----ILFLKNDISSHISQGKLGEIIRNG 219
            +    + + A +DF+++   +  ++ E+ +B    I+ L++ I + + + +   I++NG
Sbjct: 215 TIIENMAQLTAIIDFADDNSQEIQNTDEIFHBVEKNIICLRDQIVTFMQKVEKSTILQNG 274

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAGIRE
Sbjct: 275 IKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIRE 334

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIFIG 326
            + D +E  GI R   +   +DL L + +     ++  P++I              I + 
Sbjct: 335 KSSDKIEMLGIXRAKKKSVQSDLCLFIVDPTDLSKL-LPEDILAHLSSKTFGNKRIIIVV 393

Query: 327 TKSDLYST--YTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            KSDL S    T+  + L            +S  T EG+E LI    S L++ F+ L  S
Sbjct: 394 NKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLI----STLTSNFESLSQS 449

Query: 373 ------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CV 423
                 +   KR    L   V Y        KD   DI+   ENLR AS  + KITG  +
Sbjct: 450 SADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAI 509

Query: 424 DVEQLLDIIFSKFCIGK 440
            +E++LD +FSKFCIGK
Sbjct: 510 GIEEILDSVFSKFCIGK 526


>gi|256841233|ref|ZP_05546740.1| tRNA modification GTPase TrmE [Parabacteroides sp. D13]
 gi|256737076|gb|EEU50403.1| tRNA modification GTPase TrmE [Parabacteroides sp. D13]
          Length = 461

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 158/464 (34%), Positives = 252/464 (54%), Gaps = 35/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRY--FFGLDGR 59
           TI A+ST      I++IR+SGP  F++C+ I + KK        +  +L Y    G +  
Sbjct: 3   TICAISTAPGVGGIAVIRVSGPDTFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  VF +P SFTGED+ E   HG   +   IL+ L      R+A PGE+++RAF 
Sbjct: 63  TIDEVIAAVFCAPHSFTGEDTVEITCHGSTYIQQQILQSLIS-SGCRIAQPGEYTQRAFM 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S +  Q RL++  M G  S    +  ++L H  S +E +LDFS
Sbjct: 122 NGKMDLSQAEAVADLIASTSAGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           + E+++ F+ +  L  +      + S ++Q   +G  I+NG  + I+G +NAGKS+L NA
Sbjct: 182 DHEELE-FADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRDV+   +++ G L +  DTAGIRET D +E  GI+R+F  ++ 
Sbjct: 241 LLNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETSDTIEALGIERSFKALDQ 300

Query: 299 ADLILLLKEINSK--------KEISFPK--NIDFIFIGTKSDL--------YSTYTEEYD 340
           A +++L+ ++           +EI+ P+  N   I    K D+        +S  TE + 
Sbjct: 301 AQIVILMYDLTRDLKDFEAFYQEIA-PRLTNKSVILAMNKCDVLPASSLPTFSFPTEGWH 359

Query: 341 HLISSFTGE----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
            +  S  G+     L++L+ ++ SI +     +  +   H   L H  + +  ++   LN
Sbjct: 360 QIAISAKGKLHIAELQQLLTEVSSIPTLHQSDIIVTNARHFEALTHALEAIHRVQ-EGLN 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G D I+++LR     L  I G V  +Q+L  IF  FCIGK
Sbjct: 419 SSLSG-DFISQDLRECIFHLSDIVGEVTTDQVLGNIFQHFCIGK 461


>gi|256273535|gb|EEU08469.1| Mss1p [Saccharomyces cerevisiae JAY291]
          Length = 526

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 179/500 (35%), Positives = 263/500 (52%), Gaps = 65/500 (13%)

Query: 1   MNHEKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDG 58
           +  ++ TI+A+ST A   SAI+IIR+SG    +     +     P  RKA LR  +    
Sbjct: 32  LTFQQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSS 91

Query: 59  R------------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM---- 102
                        +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  +    
Sbjct: 92  CSVKPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRS 151

Query: 103 --PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQ 160
              ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  
Sbjct: 152 SGKDIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFEN 211

Query: 161 WIDKLTHIRSFIEADLDFSEE--EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEII 216
           W + +    + + A +DF+++  +++QN       V  +I+ L++ I + + + +   I+
Sbjct: 212 WRETIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTIL 271

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +NG K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAG
Sbjct: 272 QNGIKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAG 331

Query: 277 IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFI 323
           IRE + D +E  GI R   +   +DL L + +     ++  P++I              I
Sbjct: 332 IREKSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKL-LPEDILAHLSSKTFGNKRII 390

Query: 324 FIGTKSDLYST--YTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKL 369
            +  KSDL S    T+  + L            +S  T EG+E LI    S L++ F+ L
Sbjct: 391 IVVNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLI----STLTSNFESL 446

Query: 370 PFS------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG 421
             S      +   KR    L   V Y        KD   DI+   ENLR AS  + KITG
Sbjct: 447 SQSSADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITG 506

Query: 422 -CVDVEQLLDIIFSKFCIGK 440
             + +E++LD +FSKFCIGK
Sbjct: 507 QAIGIEEILDSVFSKFCIGK 526


>gi|134297397|ref|YP_001121132.1| tRNA modification GTPase TrmE [Burkholderia vietnamiensis G4]
 gi|205829126|sp|A4JJ44|MNME_BURVG RecName: Full=tRNA modification GTPase mnmE
 gi|134140554|gb|ABO56297.1| tRNA modification GTPase trmE [Burkholderia vietnamiensis G4]
          Length = 464

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 155/467 (33%), Positives = 244/467 (52%), Gaps = 37/467 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           + + I A++T A    I ++R+S    G +  Q        ++  PR AS   F    G 
Sbjct: 5   DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAAQALSDALCGQRLAPRHASYVPFVDAHGA 64

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRR 116
            LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+RR
Sbjct: 65  PLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTRR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF N K+DL +AE++ADLI + TE   R +   +    S      ++ +  +R  +EA L
Sbjct: 125 AFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDSAFSRQIHALVEDVITLRMLVEATL 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL 
Sbjct: 185 DFPEEE-IDFLEAADARGKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLL 243

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ E+
Sbjct: 244 NALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSEI 303

Query: 297 ENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYST------------Y 335
           E AD++L L  ++S+  ++         FP  +  + +  K+DL                
Sbjct: 304 ERADVVLHL--LDSRTGMTPEDETIAARFPDGVPVVRVLNKTDLTGVPACVEHPAAAGDL 361

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS- 394
           TE +   +S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+ 
Sbjct: 362 TEVH---LSAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAAD 417

Query: 395 -LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 418 HAEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|300705596|ref|YP_003747199.1| GTPase [Ralstonia solanacearum CFBP2957]
 gi|299073260|emb|CBJ44619.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Ralstonia solanacearum CFBP2957]
          Length = 434

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 145/434 (33%), Positives = 232/434 (53%), Gaps = 29/434 (6%)

Query: 33  VCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVV 92
           V + +C +    PR+A+   F   DG  +D+G+ + FP+P S+TGED  E   HGG  V+
Sbjct: 4   VMQAVCGRLLQ-PRQATYLPFLDADGHAIDRGIALWFPAPHSYTGEDVLELQGHGGPVVM 62

Query: 93  NGILE---ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEG 149
             +L    +  +   +R+A PGEF+RRAF N K+DL +AE++ADLI + TE   R +   
Sbjct: 63  QLLLSRCLQTGREIGVRVAEPGEFTRRAFLNDKMDLAQAEAVADLIEASTEAAARSAARS 122

Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209
           + G  S      ++++ H+R  +EA LDF EEE +    + +    +  ++  +   ++Q
Sbjct: 123 LDGAFSQAVHALVERVIHLRMLVEATLDFPEEE-IDFLEAADARGQLADIRARLDGVLAQ 181

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            + G ++R G  +V+ G  N GKSSL NALA  ++AIVT I GTTRD +   + +EG  +
Sbjct: 182 ARQGALLREGLHVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGIPL 241

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEI 314
            I DTAG+R+T+D VE+ GI+RT+  +  AD++L L                 I+++   
Sbjct: 242 NIVDTAGLRDTEDEVERIGIERTWAAIARADVVLHLLDAADYRALGLSAEDAAIDARIAG 301

Query: 315 SFPKNIDFIFIGTKSDLYSTYT------EEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
             P  +  + +  K DL    T      +  +  +S+  G G+E L   +  I   +   
Sbjct: 302 HVPAGVPTLRVINKIDLSGAATPVRVDAQPPEVWLSARDGSGIELLRAALLEIAGWQGGG 361

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
               + + +RHL  L     +L +A+   +++   LD+ AE LRLA  +L  ITG    +
Sbjct: 362 EGLYL-ARERHLSALRAAKDHLAIAADHADQRAQSLDLFAEELRLAQEALNSITGAFSSD 420

Query: 427 QLLDIIFSKFCIGK 440
            LL +IFS+FCIGK
Sbjct: 421 DLLGVIFSRFCIGK 434


>gi|325095034|gb|EGC48344.1| tRNA modification GTPase GTPBP3 [Ajellomyces capsulatus H88]
          Length = 615

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 173/545 (31%), Positives = 270/545 (49%), Gaps = 114/545 (20%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-----GRI 60
           TI+A+ST    +AI+I+R+SGP+C Q+ + +C K+  P PR A+LR  +          I
Sbjct: 63  TIYALSTAPGRAAIAIVRVSGPACVQIYDALCPKRPLPNPRVAALRTLYDPSVPPSVNTI 122

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-----------MPNLRLAN 109
           LD+ +++ FP+P + TGED  E H+HGG AVV  +L  + +           MP++R A 
Sbjct: 123 LDRAVVLHFPAPNTVTGEDVLELHIHGGPAVVKAVLNAIPRCAGAFSNEKIAMPSVRYAE 182

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G SG L+  Y +W  +L + R
Sbjct: 183 PGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERWRQQLLYAR 242

Query: 170 SFIEADLDFSE----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
             +EA +DFSE    +E ++ F S  +  ++  L   I+ HI     GE++R+G ++ +L
Sbjct: 243 GEMEALIDFSEDQHFDESIEEFVSS-ITGEVRNLVRQINLHIENASKGELLRSGIRVALL 301

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---- 281
           G  NAGKSSL N +  ++ AIV+   GTTRD++ + +D+ GY  K  D AG+R       
Sbjct: 302 GAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGYFCKFGDMAGLRSGHIARS 361

Query: 282 -----DIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF---PKNID--------- 321
                  VE+EGI+R       +D++++   L+E ++   +     P+ +D         
Sbjct: 362 GSMPIGAVEQEGIRRAKARALESDVVIVVLSLEESDNGTGVKLVLEPEVVDAVRSCIALE 421

Query: 322 --FIFIGTKSDLYS--TYTEEYDH-LISSFTGE--------------------------- 349
              I    K D YS  TYT      L+ S T E                           
Sbjct: 422 KHMIVAVNKFDKYSPTTYTARTQQKLVDSLTEEISSVEPRLTQDQIFLISCREVENEVSQ 481

Query: 350 ---------GLEELINKIKSI-----LSN---KFKKLPF--SIPSHKRHLYHLSQTVRYL 390
                     L ELI   K +     L N   +F KL +  S+    R   +L + V++L
Sbjct: 482 EAEPGNIQKFLGELIRTFKRMSTPSELDNGNEQFDKLYWEDSLGVTHRQRSNLQKCVQHL 541

Query: 391 ------------EMASLNEKDCGLDII--AENLRLASVSLGKITG---CVDVEQLLDIIF 433
                         A+  + +   DI+  AE+LR A+  L KITG     DVE +L ++F
Sbjct: 542 NDFLSQTCQTPDNAANAEQIEVNFDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVVF 601

Query: 434 SKFCI 438
            K+ +
Sbjct: 602 EKYSL 606


>gi|240277090|gb|EER40600.1| tRNA modification GTPase GTPBP3 [Ajellomyces capsulatus H143]
          Length = 615

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 173/545 (31%), Positives = 270/545 (49%), Gaps = 114/545 (20%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-----GRI 60
           TI+A+ST    +AI+I+R+SGP+C Q+ + +C K+  P PR A+LR  +          I
Sbjct: 63  TIYALSTAPGRAAIAIVRVSGPACVQIYDALCPKRPLPNPRVAALRTLYDPSVPPSVNTI 122

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-----------MPNLRLAN 109
           LD+ +++ FP+P + TGED  E H+HGG AVV  +L  + +           MP++R A 
Sbjct: 123 LDRAVVLHFPAPNTVTGEDVLELHIHGGPAVVKAVLNAIPRCAGAFSNEKIAMPSVRYAE 182

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G SG L+  Y +W  +L + R
Sbjct: 183 PGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERWRQQLLYAR 242

Query: 170 SFIEADLDFSE----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
             +EA +DFSE    +E ++ F S  +  ++  L   I+ HI     GE++R+G ++ +L
Sbjct: 243 GEMEALIDFSEDQHFDESIEEFVSS-ITGEVRNLVRQINLHIENASKGELLRSGIRVALL 301

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---- 281
           G  NAGKSSL N +  ++ AIV+   GTTRD++ + +D+ GY  K  D AG+R       
Sbjct: 302 GAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGYFCKFGDMAGLRSGHIARS 361

Query: 282 -----DIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF---PKNID--------- 321
                  VE+EGI+R       +D++++   L+E ++   +     P+ +D         
Sbjct: 362 GSMPIGAVEQEGIRRAKARALESDVVIVVLSLEESDNGTGVKLVLEPEVVDAVRSCIALE 421

Query: 322 --FIFIGTKSDLYS--TYTEEYDH-LISSFTGE--------------------------- 349
              I    K D YS  TYT      L+ S T E                           
Sbjct: 422 KHMIVAVNKFDKYSPTTYTARTQQKLVDSLTEEISSVEPRLTQDQIFLISCREVENEVSQ 481

Query: 350 ---------GLEELINKIKSI-----LSN---KFKKLPF--SIPSHKRHLYHLSQTVRYL 390
                     L ELI   K +     L N   +F KL +  S+    R   +L + V++L
Sbjct: 482 EADPGNIQKFLGELIRTFKRMSTPSELDNGNEQFDKLYWEDSLGVTHRQRSNLQKCVQHL 541

Query: 391 ------------EMASLNEKDCGLDII--AENLRLASVSLGKITG---CVDVEQLLDIIF 433
                         A+  + +   DI+  AE+LR A+  L KITG     DVE +L ++F
Sbjct: 542 NDFLSQTCQTPDNAANAEQIEVNFDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVVF 601

Query: 434 SKFCI 438
            K+ +
Sbjct: 602 EKYSL 606


>gi|6323665|ref|NP_013736.1| Mss1p [Saccharomyces cerevisiae S288c]
 gi|1709142|sp|P32559|MSS1_YEAST RecName: Full=tRNA modification GTPase MSS1, mitochondrial; Flags:
           Precursor
 gi|798934|emb|CAA89126.1| Mss1p [Saccharomyces cerevisiae]
 gi|110610140|gb|ABG77646.1| mitochondrial GTP-binding protein [Saccharomyces cerevisiae]
 gi|190408262|gb|EDV11527.1| GTPase MSS1, mitochondrial precursor [Saccharomyces cerevisiae
           RM11-1a]
 gi|285814026|tpg|DAA09921.1| TPA: Mss1p [Saccharomyces cerevisiae S288c]
 gi|323332012|gb|EGA73423.1| Mss1p [Saccharomyces cerevisiae AWRI796]
          Length = 526

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 179/497 (36%), Positives = 262/497 (52%), Gaps = 65/497 (13%)

Query: 4   EKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGR-- 59
           ++ TI+A+ST A   SAI+IIR+SG    +     +     P  RKA LR  +       
Sbjct: 35  QQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSCSV 94

Query: 60  ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103
                     +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  +       
Sbjct: 95  KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
           ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W +
Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214

Query: 164 KLTHIRSFIEADLDFSEE--EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNG 219
            +    + + A +DF+++  +++QN       V  +I+ L++ I + + + +   I++NG
Sbjct: 215 TIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTILQNG 274

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAGIRE
Sbjct: 275 IKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIRE 334

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIFIG 326
            + D +E  GI R   +   +DL L + +     ++  P++I              I + 
Sbjct: 335 KSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKL-LPEDILAHLSSKTFGNKRIIIVV 393

Query: 327 TKSDLYST--YTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            KSDL S    T+  + L            +S  T EG+E LI    S L++ F+ L  S
Sbjct: 394 NKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLI----STLTSNFESLSQS 449

Query: 373 ------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CV 423
                 +   KR    L   V Y        KD   DI+   ENLR AS  + KITG  +
Sbjct: 450 SADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAI 509

Query: 424 DVEQLLDIIFSKFCIGK 440
            +E++LD +FSKFCIGK
Sbjct: 510 GIEEILDSVFSKFCIGK 526


>gi|89100947|ref|ZP_01173794.1| tRNA modification GTPase [Bacillus sp. NRRL B-14911]
 gi|89084356|gb|EAR63510.1| tRNA modification GTPase [Bacillus sp. NRRL B-14911]
          Length = 461

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 161/462 (34%), Positives = 262/462 (56%), Gaps = 27/462 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD-- 57
           E +TI A+ST     AI+I+RLSG   F + + + +    K+       ++ Y   +D  
Sbjct: 2   ELDTIAAISTPMGEGAIAIVRLSGDEAFSIADKLYRGVGGKRISDAASHTIHYGHIIDPK 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G++ ++ ++ V   P++FT ED  E + HGGI  VN +L+ L      RLA PGEF++R
Sbjct: 62  TGQVAEEVMVSVMKGPKTFTKEDVVEINCHGGIVSVNRVLQ-LVLNHGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G LS L  +   ++    + IE ++
Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMEGRLSKLVKRLRQEILETLAHIEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  + + +L    F+K +I   +   + G+I+R G   VI+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTHQLLLEKAGFVKGEIEKLLKTSEQGKILREGLSTVIVGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLLDTAGIRETEDIVERIGVERSRQVL 300

Query: 297 ENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLI 343
           + ADLILL+     E+  + E  F   +++D I I  K+DL      E          L+
Sbjct: 301 KEADLILLVVNYSDELTQEDENLFKVVEDMDVIVIVNKTDLPQQIDMERVRELAAGHRLV 360

Query: 344 SS--FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
           ++     +G++EL   I S+  +   +    +  S+ RH+  L+Q +  +E A LN  D 
Sbjct: 361 TTSLLEDQGVDELEESISSLFFAGSIEAGDMTYVSNTRHIALLNQALNSIEEA-LNGVDF 419

Query: 401 G--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G  +DII  +L      LG+I G    + L+D +FS+FC+GK
Sbjct: 420 GTPIDIIQIDLTRTWELLGEIIGESVHDSLIDQLFSQFCLGK 461


>gi|115629139|ref|XP_781610.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115969591|ref|XP_001188085.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 546

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/338 (39%), Positives = 197/338 (58%), Gaps = 8/338 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFG-LDGRILD 62
           + TIFA+++G     ++++R+SGP    V +  I  K+    R+A L   +      ++D
Sbjct: 38  QRTIFALASGHGKCGVAVVRVSGPRANVVFDKMILSKRAIETRQAVLSPIYDPTTNELID 97

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            GL++ F  P+SFTGED  E  VHGG AV+  +   L K+    LA PGEFS+RAF NGK
Sbjct: 98  HGLILWFTGPKSFTGEDVCELQVHGGPAVIAALYGALGKLDGFHLAEPGEFSKRAFYNGK 157

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL E E L DLI +ETE QR+ ++  MSG LS LY  W  +L    + +EA +DFSE+E
Sbjct: 158 LDLTEVEGLGDLIQAETEAQRQQAVRQMSGVLSKLYEGWRGRLIRTVAHVEAFIDFSEDE 217

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +++    +E   ++  L  ++  H+   + GE +R+G  + I G  N GKS+L NAL ++
Sbjct: 218 NIEEGVLEEARQEVEQLLTEVRRHLQDSRKGERLRSGVHVTIAGQPNVGKSTLLNALCQR 277

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             AIV+ I GTTRDV+   L++ GY V +SDTAGIRE+ D +E+EG++R       ADL+
Sbjct: 278 PAAIVSPIAGTTRDVVESSLNIGGYPVILSDTAGIRESLDEIEREGVRRARERTNLADLV 337

Query: 303 LLLKEINSKKEISFPK----NIDFIFIGTKSDLYSTYT 336
           + + +  +      PK     ID     T+S L+   T
Sbjct: 338 IYMLDATTLDPQPSPKAFLEQIDSYV--TQSKLWENRT 373



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 9/102 (8%)

Query: 343 ISSFTGEGLEELIN----KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           +S  T EG++  ++    K+K + SN     P+   + +RH  HL++    L + S   +
Sbjct: 450 VSCKTEEGMDGFLDLLQEKLKKMCSNPTSSDPYL--TQERHRNHLTECA--LSLQSFESR 505

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  L + AE LR+A   LGKITG V  E++LD+IF  FCIGK
Sbjct: 506 D-DLVMAAEELRIALRQLGKITGHVTTEEVLDVIFKDFCIGK 546


>gi|90194124|gb|ABD92623.1| ThdF [Actinobacillus porcinus]
          Length = 436

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 154/437 (35%), Positives = 245/437 (56%), Gaps = 29/437 (6%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SGP    V + +  K    PR A+   F  +DG  LD+G+ + F +P SFTGE
Sbjct: 7   GVGILRVSGPLAEDVAKAVVGKTLK-PRLANYLPFKDIDGTTLDQGIALFFKAPNSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQIVLDLLLKRILQVKGVRLAKPGEFSEQAFLNDKLDLAQAEAIADLIDAS 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S+   Q ++++ ++R+++EA +DF +EE +   +  ++   LN+
Sbjct: 126 SEQAARSALKSLQGEFSNKVNQLVEQVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLNE 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+   +++     QG    I+R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTR
Sbjct: 185 IIAQLDNVRREARQGS---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL----------- 304
           DVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD +LL           
Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLRDATDEVERIGITRAWNEIEQADRVLLMLDSSDPASND 301

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHLI---SSFTGEGLEELINKI 358
           L+++ S+     P N+    I  K+DL     +  EE  + I   S+ T +G++ L   +
Sbjct: 302 LEKVRSEFLAKLPANLPVTIIRNKTDLSGEGESIQEENGYTIIRLSAQTQQGVDFLREHL 361

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416
           K  +  +         + +RHL  L +   +L+     L +   G +++AE LRL    L
Sbjct: 362 KQSMGYQ-TGTEGGFLARRRHLEALEKAAEHLQAGHIQLTQFYAG-ELLAEELRLVQNCL 419

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 420 SEITGQFTSDDLLGNIF 436


>gi|255014529|ref|ZP_05286655.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_7]
          Length = 461

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 157/464 (33%), Positives = 252/464 (54%), Gaps = 35/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRY--FFGLDGR 59
           TI A+ST      I+++R+SGP  F++C+ I + KK        +  +L Y    G +  
Sbjct: 3   TICAISTAPGVGGIAVVRVSGPDAFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  VF +P SFTGED+ E   HG   +   IL+ L      R+A PGE+++RAF 
Sbjct: 63  TIDEVIAAVFRAPHSFTGEDTVEITCHGSTYIQQQILQSLIS-SGCRIAQPGEYTQRAFM 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S +  Q RL++  M G  S    +  ++L H  S +E +LDFS
Sbjct: 122 NGKMDLSQAEAVADLIASTSTGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           + E+++ F+ +  L  +      + S ++Q   +G  I+NG  + I+G +NAGKS+L NA
Sbjct: 182 DHEELE-FADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRDV+   +++ G L +  DTAGIRET D +E  GI+R+F  ++ 
Sbjct: 241 LLNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETSDAIEALGIERSFKALDQ 300

Query: 299 ADLILLLKEINSK--------KEISFPK--NIDFIFIGTKSDL--------YSTYTEEYD 340
           A +++L+ ++           +EI+ P+  N   I    K D+        +S  TE + 
Sbjct: 301 AQIVILMYDLTRDLKDFEAFYQEIA-PRLTNKSVILAMNKCDVLPTSSLPTFSFPTEGWH 359

Query: 341 HLISSFTGE----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
            +  S  G+     L++L+ ++ SI +     +  +   H   L H  + +  ++   LN
Sbjct: 360 QIAISAKGKLHIAELQQLLTEVSSIPTLHQSDIIVTNARHFEALTHALEAIHRVQ-EGLN 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G D I+++LR     L  I G V  +Q+L  IF  FCIGK
Sbjct: 419 SSLSG-DFISQDLRECIFHLSDIVGEVTTDQVLQNIFRYFCIGK 461


>gi|262383614|ref|ZP_06076750.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_33B]
 gi|262294512|gb|EEY82444.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_33B]
          Length = 461

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 157/464 (33%), Positives = 252/464 (54%), Gaps = 35/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRY--FFGLDGR 59
           TI A+ST      I+++R+SGP  F++C+ I + KK        +  +L Y    G +  
Sbjct: 3   TICAISTAPGVGGIAVVRVSGPDAFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  VF +P SFTGED+ E   HG   +   IL+ L      R+A PGE+++RAF 
Sbjct: 63  TIDEVIAAVFRAPHSFTGEDTVEITCHGSTYIQQQILQSLIS-SGCRIAQPGEYTQRAFM 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S +  Q RL++  M G  S    +  ++L H  S +E +LDFS
Sbjct: 122 NGKMDLSQAEAVADLIASTSAGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           + E+++ F+ +  L  +      + S ++Q   +G  I+NG  + I+G +NAGKS+L NA
Sbjct: 182 DHEELE-FADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRDV+   +++ G L +  DTAGIRET D +E  GI+R+F  ++ 
Sbjct: 241 LLNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETSDTIEALGIERSFKALDQ 300

Query: 299 ADLILLLKEINSK--------KEISFPK--NIDFIFIGTKSDL--------YSTYTEEYD 340
           A +++L+ ++           +EI+ P+  N   I    K D+        +S  TE + 
Sbjct: 301 AQIVILMYDLTRDLKDFEAFYQEIA-PRLTNKSVILAMNKCDVLPASSLPTFSFPTEGWH 359

Query: 341 HLISSFTGE----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
            +  S  G+     L++L+ ++ SI +     +  +   H   L H  + +  ++   LN
Sbjct: 360 QIAISAKGKLHIAELQQLLTEVSSIPTLHQSDIIVTNARHFEALTHALEAIHRVQ-EGLN 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G D I+++LR     L  I G V  +Q+L  IF  FCIGK
Sbjct: 419 SSLSG-DFISQDLRECIFHLSDIVGEVTTDQVLGNIFRHFCIGK 461


>gi|255723826|ref|XP_002546842.1| hypothetical protein CTRG_01147 [Candida tropicalis MYA-3404]
 gi|240134733|gb|EER34287.1| hypothetical protein CTRG_01147 [Candida tropicalis MYA-3404]
          Length = 488

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 161/485 (33%), Positives = 260/485 (53%), Gaps = 52/485 (10%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDG-- 58
           N  K TIFA+ST    SAI+++R+SGP    +   + +   P   R AS+R     +   
Sbjct: 10  NTLKPTIFALSTKLGKSAIAVVRISGPQAKYIYNKLTRTTTPPKNRIASVRKLLSTETDK 69

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM--PN----LRLANPG 111
             ILD+ L +  P P+++TGED  E H+HGGIA++  ++  +  +  P+    +R A+ G
Sbjct: 70  PSILDEALTLYLPGPKTYTGEDLLELHLHGGIAIIKAVMNSIKTLHAPDQGIIIRQADRG 129

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EFSR+AF NG++DL E E + ++I+SETE QR  ++   SG+   ++ QW   +    + 
Sbjct: 130 EFSRQAFVNGRLDLTELEGINEMINSETEQQRLANLSSSSGKTRLVFKQWRQDILEEIAN 189

Query: 172 IEADLDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           +   +DF E+ D+    +    V+ +I  L+  I  ++ + +  EI+ NG K+ +LG  N
Sbjct: 190 LTTIIDFGEDHDLDETETLINNVIVNIKKLEEQIRKYLKKVRSSEILLNGIKLTLLGPPN 249

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKE 287
           AGKSS+ N L  KD AIV++I GTTRD L I  ++ G+ V I DTAGIR  E  DI+E+E
Sbjct: 250 AGKSSILNTLVNKDAAIVSEIAGTTRDALDIPCEIGGFKVVIGDTAGIRMLEKADIIERE 309

Query: 288 GIKRTFLEVENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLY----ST 334
           GIKR       ADLI+++ +  + +              +  + + +  K DLY    + 
Sbjct: 310 GIKRAIERSYLADLIIVVLDPTTTENTDELKDHLANLMKEKKNILIVLNKQDLYPDSVND 369

Query: 335 YTEEYD----------HLISSFTGEGLEELINKIKSILSNKFKKL-------PFSIPSHK 377
             E+Y            ++S  +G+G++EL    + +L NKFK L       P  + S  
Sbjct: 370 MIEQYSVSLNVPKDLFQVVSCSSGQGMDEL----QELLVNKFKSLAETDESDPVLVSSRI 425

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV-SLGKITG-CVDVEQLLDIIFSK 435
           + +        + E     ++D    ++A +    SV  +GKITG  +D++++LD++FS 
Sbjct: 426 QDILENDILYGFNEFYKWAKQDDV--VVATDCLTQSVDGIGKITGEYIDLDEILDVVFSN 483

Query: 436 FCIGK 440
           FCIGK
Sbjct: 484 FCIGK 488


>gi|90194094|gb|ABD92608.1| ThdF [Actinobacillus ureae ATCC 25976]
          Length = 436

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 155/437 (35%), Positives = 242/437 (55%), Gaps = 29/437 (6%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTGE
Sbjct: 7   GVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQMILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LND
Sbjct: 126 SEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLND 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+   N +     QG    I+R G K+VI G  NAGKSSL NALA +D AIVT+I GTTR
Sbjct: 185 IIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTNIAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           DVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +LL+ +   +   +
Sbjct: 242 DVLCEHIHIDGMPLHIIDTAGLREASDEVERIGIQRAWDEIEQADHVLLMIDSTEQTAEA 301

Query: 316 F-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINKI 358
           F           P+NI    I  K DL S     +E D      +S+ T  G++ L   +
Sbjct: 302 FKTEWADFLAKLPQNIPVTVIRNKVDLSSEAEGLQELDGFTLIRLSAQTKVGVDLLREHL 361

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416
           K  +  +         + +RHL  L     +LE     L +   G +++AE LR+   +L
Sbjct: 362 KKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNAL 419

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 420 SEITGQFTSDDLLGNIF 436


>gi|148654184|ref|YP_001281277.1| tRNA modification GTPase TrmE [Psychrobacter sp. PRwf-1]
 gi|172048596|sp|A5WI36|MNME_PSYWF RecName: Full=tRNA modification GTPase mnmE
 gi|148573268|gb|ABQ95327.1| tRNA modification GTPase trmE [Psychrobacter sp. PRwf-1]
          Length = 465

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 256/470 (54%), Gaps = 35/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M H   TI A++T      + IIRLSGP  + +   +  K+   PR AS   F+  +  +
Sbjct: 1   MTHTT-TIAAIATPVGRGGVGIIRLSGPKAYAIACALTGKESFTPRLASFCRFYDANNNV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL++ F +P SFTGED  E   HGG+ + N +L  + ++     A  GEFS RAF+N
Sbjct: 60  LDEGLVLYFKAPHSFTGEDVIELQGHGGMILQNQLLARVFEL-GAHQAQAGEFSYRAFDN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DLL+AE++AD I + +      ++  ++G  S+   + ++ L  +R ++EA +DF +
Sbjct: 119 DKLDLLQAEAIADAIDATSAAAASSAIRSLTGAFSNKINEVLEALIELRLYVEASIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EEDV   S   +   +  ++  +++ +S  + G+++R+G  +V+ G  NAGKSSL N+LA
Sbjct: 179 EEDVDFLSDGVIEGKLQRIQQQLTTILSTAQQGQLLRDGVHVVLAGRPNAGKSSLLNSLA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTD+ GTTRD L   + L G  + ++DTAG+R+T D VE+ GI+R    +  AD
Sbjct: 239 GQERAIVTDVAGTTRDTLQETIVLNGLTIHLTDTAGLRDTTDAVERIGIERARTAINQAD 298

Query: 301 LILLL----KEINSKKEIS--FPKNID---------FIFIGTKSDLYSTYTEEYDHL--- 342
           L+LL+    +E++  K  S  F + ID          + IG K DL     E  + L   
Sbjct: 299 LLLLVYDLSQEVDPLKLASELFGEGIDGTPNFDPSKLLLIGNKRDLVEDKGESANKLADK 358

Query: 343 ----------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
                     +S  T +G+ +LI  +   +   F     S+ +  RHL  L +T ++++ 
Sbjct: 359 ADILGYEQVNVSCETSQGIPQLIASLCDKVG--FHPPENSLIARTRHLDALRRTQQHVDE 416

Query: 393 A--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   L     G +++AE+LR    SLG+ITG    + LL  IF  FCIGK
Sbjct: 417 AHQQLVIYQAG-ELVAESLRQGQYSLGEITGEFSADDLLGRIFGSFCIGK 465


>gi|312130569|ref|YP_003997909.1| tRNA modification gtpase trme [Leadbetterella byssophila DSM 17132]
 gi|311907115|gb|ADQ17556.1| tRNA modification GTPase trmE [Leadbetterella byssophila DSM 17132]
          Length = 444

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 156/448 (34%), Positives = 257/448 (57%), Gaps = 19/448 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDG-RILD 62
           ++TI AV+T     A++IIR+SGP    + + + K K        ++ Y   +DG +++D
Sbjct: 4   QDTICAVATPPGVGALAIIRVSGPEAISLVDAVFKGKSLKHAEGNTIVYGHIVDGEKVVD 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+ VF +P SFTGEDS E   HG   ++  +++ L +    R A PGEF++RAF NG+
Sbjct: 64  EVLVSVFRNPRSFTGEDSLEISTHGSPFIIRYVMKLLVQ-KGCRPAGPGEFTQRAFLNGR 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI++++E   + ++  + G  S       + L H  S +E +LDF EE 
Sbjct: 123 LDLVQAEAVADLIAADSEAAHKTALNQLRGGFSRKLAILREDLIHFASLVELELDFGEE- 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV+     ++   IL L++ I   I   + G  I+ G+ + I+G  NAGKS+L NAL  +
Sbjct: 182 DVEFADRDDLKALILNLQDQIRPLIQSFESGNAIKEGFPVAIIGAPNAGKSTLLNALLNE 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVTDI GTTRD++   L ++G   +  DTAGIRET+D++E  GI+R+   +++A L+
Sbjct: 242 DRAIVTDIAGTTRDIIEDTLIIDGIKFRFIDTAGIRETEDLIEAMGIERSKKALQDARLV 301

Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           L L   +S +   F +++           ++  K+D+  +   E +  IS+    G+E L
Sbjct: 302 LFL--YDSTQGYEFLQDLQGLIREDQTLFWVRNKTDIDESSIREGEIRISARAQVGIEAL 359

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLA 412
             +I   +++  K    +I ++ RH  HL++    L+  +  L+    G D +A+++RLA
Sbjct: 360 KKQISQSVAD-LKTTDTTI-TNVRHFDHLTKAYSALDDVLTGLHSGITG-DFLAQDIRLA 416

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LG+ITG +  + LL  IF KFCIGK
Sbjct: 417 LHHLGEITGTISTDDLLKNIFGKFCIGK 444


>gi|170758742|ref|YP_001788985.1| tRNA modification GTPase TrmE [Clostridium botulinum A3 str. Loch
           Maree]
 gi|205829144|sp|B1KUB2|MNME_CLOBM RecName: Full=tRNA modification GTPase mnmE
 gi|169405731|gb|ACA54142.1| tRNA modification GTPase TrmE [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 461

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 165/469 (35%), Positives = 264/469 (56%), Gaps = 42/469 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFFG 55
           E +TI AV+T      ISIIR+SG     +   I K K        KP+    S+RY F 
Sbjct: 3   EFDTITAVATPVGEGGISIIRISGDKSLDIVSSIFKGKNDRSLDDIKPY----SMRYGFI 58

Query: 56  LDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
           ++     I+D+ L+     P SFT ED+ E + HGG+     IL+EL K    RLA PGE
Sbjct: 59  IEKESKEIIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIK-SGARLAEPGE 117

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NG+IDL +AE++ D+I S+T++  + +++   G LS       +++  I + I
Sbjct: 118 FTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKIIAHI 177

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +D+ E+ D++  + +++  D+  + N I + IS  + G+I+R G   VI+G  N GK
Sbjct: 178 EATVDYPED-DLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVGK 236

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NAL  ++ AIVT+IPGTTRDV+   ++++G  +KI DTAGIRET+D+VEK G++++
Sbjct: 237 SSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVEKS 296

Query: 293 FLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
             +++ ADL++ + +++ K +      + F KN  +I +  K DL     EE +H I   
Sbjct: 297 KEKIDEADLVIFMLDLSRKIDEEDIEIMDFIKNKKYIVLLNKLDLNKDLNEE-NHFIKEL 355

Query: 347 -----------TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT----VRYLE 391
                         GL EL   IK++  +   K    I ++ RH   L ++    ++ +E
Sbjct: 356 DSKYIIKTSVKNNSGLNELKECIKNLFFSGEIKSDELIVTNARHQEALIRSRESCIQAIE 415

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             S    +  +D+ + ++R A   LG+ITG    E ++D IFS+FC+GK
Sbjct: 416 TLS---DEISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461


>gi|52082648|ref|YP_081439.1| tRNA modification GTPase TrmE [Bacillus licheniformis ATCC 14580]
 gi|52788047|ref|YP_093876.1| tRNA modification GTPase TrmE [Bacillus licheniformis ATCC 14580]
 gi|319648514|ref|ZP_08002730.1| tRNA modification GTPase mnmE [Bacillus sp. BT1B_CT2]
 gi|81384063|sp|Q65CN1|MNME_BACLD RecName: Full=tRNA modification GTPase mnmE
 gi|52005859|gb|AAU25801.1| ThdF protein - tRNA modification [Bacillus licheniformis ATCC
           14580]
 gi|52350549|gb|AAU43183.1| ThdF [Bacillus licheniformis ATCC 14580]
 gi|317389593|gb|EFV70404.1| tRNA modification GTPase mnmE [Bacillus sp. BT1B_CT2]
          Length = 459

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 156/461 (33%), Positives = 258/461 (55%), Gaps = 29/461 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDG--- 58
           +TI A+ST     AI+I+R+SGP    + + + K    K+       ++ Y   +D    
Sbjct: 2   DTIAAISTPMGEGAIAIVRMSGPEALAIADKVYKGPRGKRLSSVDSHTINYGHIVDPETE 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ V  +P++FT ED  E + HGG+  VN +L+ L      RLA PGEF++RAF
Sbjct: 62  KVVEEVMVSVLKAPKTFTREDIVEINCHGGLVTVNQVLQ-LVLREGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    ++M  M G LSSL  +   ++    + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSSLIKRLRAEILETLAHVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + K ++     +K +I + ++  + G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEYDDVEEMTHKMLIEKATKVKKEIEALLTTSEQGKILREGISTVIIGRPNVGKSSLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 241 LVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300

Query: 299 ADLILLL---KEINSKKEISF---PKNIDFIFIGTKSDLYSTYTEEYDHL---------- 342
           ADLILL+    E  S ++I      K +D I I  K+DL      + D +          
Sbjct: 301 ADLILLVLNYSESLSDEDIKLFEATKGMDIIVIVNKTDLEQKL--DLDRVRELAGNQPVV 358

Query: 343 -ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
             S    EG++EL   I+S+  +   +    +  S+ RH+  L +  R +  A    E D
Sbjct: 359 TTSLLKEEGIDELEEAIQSLFFTGAIESGDLTYVSNTRHISLLHEAKRAITDALEGIEND 418

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 419 VPIDMVQIDLTRCWEVLGEIIGDAVHESLIDQLFSQFCLGK 459


>gi|311032250|ref|ZP_07710340.1| tRNA modification GTPase TrmE [Bacillus sp. m3-13]
          Length = 462

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 160/462 (34%), Positives = 260/462 (56%), Gaps = 25/462 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LD- 57
           +E +TI A+ST     AI+I+RLSG   F++ +  F+    K     AS    +G  +D 
Sbjct: 2   YEFDTIAAISTPMGEGAIAIVRLSGEEAFRIIDEIFVTPSSKKMKDVASHTIHYGHIVDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
              +I+++ ++ V   P++FT ED  E + HGG+  VN +L+ L      RLA PGEF++
Sbjct: 62  KTDKIIEEVMVSVMRGPKTFTREDVVEINCHGGLVSVNKLLQ-LVLSRGARLAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    +++  M G LS L  +   ++    + +E +
Sbjct: 121 RAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMEGRLSKLIQKLRQEILETLAHVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  + + +L    ++K ++   +   + G+I+R G   VI+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTHQLLLEKSTYVKEELEKLLQTSQQGKILREGLSTVIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N+L  ++ AIVTDIPGTTRDV+   + + G  +++ DTAGIRET+DIVE+ G++R+   
Sbjct: 241 LNSLVHENKAIVTDIPGTTRDVIEEYVSVRGVPLRLVDTAGIRETEDIVERIGVERSREV 300

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDH--L 342
           ++ ADLILL+   N       K+     K +D I I  K+DL +        E  +H  +
Sbjct: 301 LKKADLILLVLNNNDDLTMEDKQLFEAVKGMDVIVIVNKTDLPTKIDIGQVKELANHHTV 360

Query: 343 ISSFTGE--GLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
           IS+   E  G++EL   I S+      +    +  S+ RH+  ++Q  + LE A +  E 
Sbjct: 361 ISTSLKEEQGIDELEEAISSMFFQGDLEAGDMTYVSNSRHIGLITQAQQALEDAIVGMES 420

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +DI+  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 421 GVPIDIVQIDLTRTWEILGEIIGDAVHESLIDQLFSQFCLGK 462


>gi|138897067|ref|YP_001127520.1| tRNA modification GTPase TrmE [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249888|ref|ZP_03148584.1| tRNA modification GTPase TrmE [Geobacillus sp. G11MC16]
 gi|166200479|sp|A4ITX1|MNME_GEOTN RecName: Full=tRNA modification GTPase mnmE
 gi|134268580|gb|ABO68775.1| Thiophen and furan oxidation [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210764|gb|EDY05527.1| tRNA modification GTPase TrmE [Geobacillus sp. G11MC16]
          Length = 462

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 158/463 (34%), Positives = 258/463 (55%), Gaps = 29/463 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLD- 57
           E +TI A+ST     AI+I+RLSG    ++ + +      K+ K  P   ++ Y   +D 
Sbjct: 3   EFDTIAAISTPMGEGAIAIVRLSGDEAVEIADRLFRSPTGKQLKDVPSH-TIHYGHIVDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             GRI+++ ++ V  +P++FT ED  E + HGG   VN +L+ L      RLA PGEF++
Sbjct: 62  KSGRIVEEVMVSVMRAPKTFTREDVVEINCHGGFVSVNRVLQ-LVLANGARLAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    ++++ M G LS L  +    +    + +E +
Sbjct: 121 RAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETLAHVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  + + +     +++  I   +S    G+I+R G   VI+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTPRLLKEKAEYVRGQIEKLLSTATQGKILREGLATVIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   
Sbjct: 241 LNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGVERSRQM 300

Query: 296 VENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342
           ++ ADLILL+   +       ++  +  + +D I I  K+DL      E    L      
Sbjct: 301 LKKADLILLVLNYHEPLTEEDERLFAMTEGMDVIVIVNKTDLPQNIDIERVKELAAGRPI 360

Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
              S     G++EL   I  +    + +    +  S+ RH+  L Q  + +E A L+  D
Sbjct: 361 VATSLLCERGIDELEKAIADLFFGGELEAGDLTYVSNSRHIALLEQAKKAIEDA-LSGID 419

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D++  +LR A   LG+I G    E L+D +F++FC+GK
Sbjct: 420 VGMPVDLVQIDLRRAWELLGEIVGDTVHESLIDQLFAQFCLGK 462


>gi|90194106|gb|ABD92614.1| ThdF [Actinobacillus equuli subsp. haemolyticus]
          Length = 436

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 156/440 (35%), Positives = 244/440 (55%), Gaps = 33/440 (7%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTG
Sbjct: 6   GGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTG 64

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++ADLI +
Sbjct: 65  EDVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LN
Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI+   N +     QG    I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTT
Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTT 240

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL+  I+S ++I
Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLM--IDSTEQI 298

Query: 315 S-------------FPKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELI 355
           +              P+NI    I  K DL       +E D      +S+ T  G++ L 
Sbjct: 299 AEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLAS 413
             +K  +  +         + +RHL  L     +LE     L +   G +++AE LR+  
Sbjct: 359 EHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQ 416

Query: 414 VSLGKITGCVDVEQLLDIIF 433
            +L +ITG    + LL  IF
Sbjct: 417 NALSEITGQFTSDDLLGNIF 436


>gi|114762196|ref|ZP_01441664.1| tRNA modification GTPase [Pelagibaca bermudensis HTCC2601]
 gi|114545220|gb|EAU48223.1| tRNA modification GTPase [Roseovarius sp. HTCC2601]
          Length = 373

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 149/383 (38%), Positives = 216/383 (56%), Gaps = 12/383 (3%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ L+++F    SFTGE  AEFHVHG +A+   +L EL +M  LR+A  GEF+RRA E
Sbjct: 1   MLDEALVLLFSKGASFTGEAVAEFHVHGSVAIQRAVLRELEEMDGLRMAEAGEFTRRALE 60

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N ++DL + E+LADLI SETE QR  ++   +G L      W   L H  S +E  +DF+
Sbjct: 61  NDRLDLTQVEALADLIESETESQRVQALRVFAGALGERVEDWRRDLVHAASLLEVTIDFA 120

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +EE V    S EV   +  +   +   I      E IR G+++ I+G  N GKSSL NAL
Sbjct: 121 DEE-VPVDVSGEVREFLARVIAGLDREIRGMDGAERIRTGFEVAIVGAPNVGKSSLLNAL 179

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A +D AI ++I GTTRDV+ + +++ G  V + DTAG+RET D VE+ GI R       +
Sbjct: 180 AGRDAAITSEIAGTTRDVIEVRMEIAGLPVTLLDTAGLRETQDPVEQIGIARARDRAMTS 239

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
           DL ++L   + +    F  +   I + +K+DL           IS+ TG+GL+ LI++I 
Sbjct: 240 DLRVILS--DERGMPDFDVSDGDIVLRSKADLAGEA-----EGISAKTGQGLDALISEIG 292

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLG 417
             LS+K +     + + +RH     +    LE  ++ L       D+ AE +R A  +L 
Sbjct: 293 ERLSDKVQ--AAGLATRERHRVAFLEGRIALEDAISLLARGPDSYDLAAEEIRAAIRALE 350

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
            + G +DVE LLD IFS FCIGK
Sbjct: 351 LLIGRIDVENLLDEIFSSFCIGK 373


>gi|152990630|ref|YP_001356352.1| tRNA modification GTPase TrmE [Nitratiruptor sp. SB155-2]
 gi|172048731|sp|A6Q3D6|MNME_NITSB RecName: Full=tRNA modification GTPase mnmE
 gi|151422491|dbj|BAF69995.1| tRNA modification GTPase TrmE [Nitratiruptor sp. SB155-2]
          Length = 448

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 155/454 (34%), Positives = 253/454 (55%), Gaps = 20/454 (4%)

Query: 1   MNHEKE-TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           MN E   TI A++T     +I+I+R+SGP    + + + KKK   PR A L   +     
Sbjct: 1   MNFENNSTIAAIATAYGVGSIAIVRISGPKSLSIAQKLSKKKDIQPRVAHLVTLYDDQSE 60

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +LI F +P+SFTGED  EF  HGG+ V N IL+EL K    RLANPGEFS+RAF 
Sbjct: 61  PIDQAILIYFQAPKSFTGEDVVEFQCHGGVVVANMILQELLK-AGARLANPGEFSKRAFF 119

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGKIDL EAE++A +I +++E   ++  + + GEL +      +KL  I +++E ++D++
Sbjct: 120 NGKIDLSEAEAIAKMIEAKSEDAAKILAKQIKGELKNYIENLREKLIRILAYVEVNIDYA 179

Query: 180 EEEDVQNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           EE+  ++   +  + LNDI   + ++   ++  K    +  G+K+ I+G  N GKSSL N
Sbjct: 180 EEDLPKDLQEQIEQQLNDI---QEELQKIVASSKRRAGLIEGFKVAIIGKPNTGKSSLLN 236

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL   + AIV+DI GTTRD +   + +  +LV+  DTAGIRE  D +EK GI+R+   +E
Sbjct: 237 ALLDYERAIVSDIAGTTRDTIEESVRIGTHLVRFVDTAGIREAHDTIEKIGIERSIQAIE 296

Query: 298 NADLILLL----KEINSK-KEI-----SFPKNIDFIFIGTKSDLYSTYT-EEYDHLISSF 346
            +D+++ +    K ++++ K+I     S+    +FI +  K D        ++D L  S 
Sbjct: 297 ESDIVIAMFDASKPLDAEDKKILELIESYKDQKEFIVVANKVDKGKHLDLSDFDALYMSV 356

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
             E +  L  K++ +L + F      +    R +  ++  +  +  A    +   L+I A
Sbjct: 357 KKE-ITPLTQKLQKLL-DSFANTEEIMLVTSRQIEAVTYALENINQARTPLQMGELEIFA 414

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++     S+G IT  +   +LLD +F +FC+GK
Sbjct: 415 FHINRVIESIGSITRPMQSSELLDKMFGEFCLGK 448


>gi|171693857|ref|XP_001911853.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946877|emb|CAP73681.1| unnamed protein product [Podospora anserina S mat+]
          Length = 520

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 176/523 (33%), Positives = 264/523 (50%), Gaps = 95/523 (18%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGL---- 56
           N   +TI+A+S+GA  + I++IR+SGP    V + +C  K P  PR A +R         
Sbjct: 4   NENDDTIYALSSGAGKAGIAVIRISGPGSLSVYKALCPTKPPPKPRYAGVRTLLDPASAN 63

Query: 57  --DGRILDK-GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANP 110
             +G ILD   L++ FP P++ TGED  E HVHGG A +  +L  + K      +R A P
Sbjct: 64  LPNGNILDSDSLILYFPGPKTVTGEDVLELHVHGGSATIKAVLAAIPKCSTTGKVRYAEP 123

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           GEF+RRAF NG++DL + ESL D + + TE QRR++++G SG L   Y +W ++L   R 
Sbjct: 124 GEFTRRAFLNGRLDLAQVESLGDTLDAVTEQQRRVAVQGNSGVLGKTYERWREELLLARG 183

Query: 171 FIEADLDFSEEEDVQNF--SSKEVLNDILFLKNDISSHISQGKLG----EIIRNGYKIVI 224
            IEA +DFSE+   Q+F  S  E+L ++  L   I   I+  KLG    E++RNG +I +
Sbjct: 184 EIEALIDFSED---QHFDESPTELLTNVRRLVEGILHSINMHKLGSQKSELLRNGIRIAL 240

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDD 282
           LG  NAGKSSL N +  ++ +IV+   GTTRDV+  +LD+ GYL   +DTAGIR   T  
Sbjct: 241 LGPPNAGKSSLMNQIVGREASIVSSEAGTTRDVIEANLDIRGYLCSFADTAGIRTESTRS 300

Query: 283 I-------------VEKEGIKRTFLEVENADLILLLKEINSKK----EISF--------P 317
           I             +E+EGI+R   +  ++D++++L  + + K    +IS+         
Sbjct: 301 IANLDGDSSPVIGAIEQEGIRRARQKAMDSDIVIVLASVEAVKGGGHQISYDVETLKLAA 360

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTG---------EGLEEL-------------- 354
                +    KSD+     E  + LI  F           +G E L              
Sbjct: 361 AAQQCLVAVNKSDVVE--RETLEPLIQGFKSSALGSVQGLQGAEPLTISCKAAATAAAGL 418

Query: 355 -----INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR--------YLEMASLNEKDCG 401
                ++ +   L   F +L  S+P    HL  +++           +LE      + CG
Sbjct: 419 TDPGGVHTLTERLVQSFSEL-TSLPGDVHHLLGVTERQNQLLFECQMHLEGFMTEAQACG 477

Query: 402 L----DII--AENLRLASVSLGKITG---CVDVEQLLDIIFSK 435
                D++  AE+LRLA+  L  ITG     DVE++L +IF K
Sbjct: 478 AGREPDVVLAAEHLRLAANRLACITGRGDSGDVEEVLGVIFEK 520


>gi|67922416|ref|ZP_00515927.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Crocosphaera watsonii WH 8501]
 gi|67855760|gb|EAM51008.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Crocosphaera watsonii WH 8501]
          Length = 460

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 162/464 (34%), Positives = 251/464 (54%), Gaps = 37/464 (7%)

Query: 4   EKETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL--- 56
           + ETI A++T  +P   +I IIRLSG     + +  FI       P+  S    +G    
Sbjct: 7   QGETIAAIATAIVPQQGSIGIIRLSGNKALSIAKTLFIAPGN---PKWQSHSILYGYIRH 63

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L       LA PGEF+
Sbjct: 64  PQSQQVIDEALLLIMLAPRSYTREDVIEFHCHGGIMPVQQVLQ-LCIEQGATLAQPGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH----IRS 170
            RAF NG+IDL +AES+++L+ + ++   ++++ G+ G+L+    Q + KL H    I +
Sbjct: 123 LRAFLNGRIDLTQAESISELVGARSQQASQMALAGLQGKLA----QPLQKLRHHCLDILA 178

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            IEA +DF  EED+     K +   +  +   + + ++  + GE++RNG K+ I+G  N 
Sbjct: 179 EIEARIDF--EEDLPPLDKKAISQGLETILEQVQTILNTAERGELLRNGLKVAIVGRPNV 236

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSL NA ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIR+T D VEK G++
Sbjct: 237 GKSSLLNAWSRSDRAIVTDLPGTTRDVIESQLVVGGIPIQVLDTAGIRQTTDQVEKIGVE 296

Query: 291 RTFLEVENADLILLLKE---INSKKEISFPKNID---FIFIGTKSDLYSTYTEEYDHLIS 344
           R+ L    ADL+LL  +   + S ++    + I+    I +  K DL +    ++   IS
Sbjct: 297 RSQLAASQADLVLLTVDATVVWSNQDNEIYQAIEHRPVILVINKIDLATPDLAQFPTQIS 356

Query: 345 SFT------GEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
                     +G+E L   I K+I  +K          ++R    L++    LE      
Sbjct: 357 EIVKTSAANNQGIEALETAILKAIHQDKLTASNLDFAINQRQSAALTRAKISLEQVQTTI 416

Query: 398 K-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           K +  LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 417 KEELPLDFWTIDLRSAIQALGEITGEEITESVLDRIFSRFCIGK 460


>gi|167627608|ref|YP_001678108.1| tRNA modification GTPase TrmE [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189036203|sp|B0TYD1|MNME_FRAP2 RecName: Full=tRNA modification GTPase mnmE
 gi|167597609|gb|ABZ87607.1| GTPase of unknown function [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 450

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 148/454 (32%), Positives = 248/454 (54%), Gaps = 21/454 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + K+TI AV+T      I I+R+SG     + E + KK+   PR A+    + ++  I+D
Sbjct: 2   YTKDTIVAVATPQGNGGIGIVRISGSDALSIAEKLTKKRLK-PRYATFCNIYNIN-EIID 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++I F SP S+TGED  E   HG   ++N I++   +    R+AN GEF+ RAF N K
Sbjct: 60  HGIVIFFNSPNSYTGEDVVEIQAHGNPFILNLIIKATLEY-GARMANAGEFTERAFLNNK 118

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++AD+I++ +E   + + + + G+ S      ++KL ++R ++EA +DF EEE
Sbjct: 119 LDLTQAEAVADIINASSETAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +     +++ N +  +   I    +  K G I+  G  ++++G  NAGKSSL NALA K
Sbjct: 179 -INFLEDQKIHNSLQDIYKTILDVKNSCKQGAILVEGITLILVGKPNAGKSSLLNALAGK 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR   +++ AD I
Sbjct: 238 ESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRSSDDIIESEGIKRAIKKIQEADQI 297

Query: 303 LLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEYDH--LISSF 346
           L + +  +  ++ F              PK+ID  ++  K DL       +D+   IS+ 
Sbjct: 298 LFVTDDYTNSQVKFSDIKDIIPEFYHQIPKDIDITYVHNKIDLLKEVPLNHDNHIYISAE 357

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
           +  G+++L + I + +    +       + +RH+  +     ++++A    +    +++A
Sbjct: 358 SNIGIDKLKDHILAKVGYTTQNESI-YTARERHVTAIDNAFDHIKLAKEQLELGNGELLA 416

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E L +    L  ITG    + LL  IFS FCIGK
Sbjct: 417 EELLIVQEHLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|171061051|ref|YP_001793400.1| tRNA modification GTPase TrmE [Leptothrix cholodnii SP-6]
 gi|205415776|sp|B1Y0F6|MNME_LEPCP RecName: Full=tRNA modification GTPase mnmE
 gi|170778496|gb|ACB36635.1| tRNA modification GTPase TrmE [Leptothrix cholodnii SP-6]
          Length = 479

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 153/483 (31%), Positives = 241/483 (49%), Gaps = 48/483 (9%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGR 59
           +    E I A++T     A+ I+R+SG     +   +  +  P  PR AS   F    G 
Sbjct: 2   LPRHHEPIAAIATAPGRGAVGIVRVSGRGLTALATALVGR--PLRPRVASYGPFLDRQGG 59

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL------------AKMPNLRL 107
            +D+GL + FP+P S+TGED  E   HGG  V+  +L                ++P LRL
Sbjct: 60  AIDRGLALHFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAGEIGTDGRPRLPGLRL 119

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEF+ RA+ N K+DL +AE++ADLI + TE   R +   +SG+ S       D L  
Sbjct: 120 AQPGEFTERAYLNDKLDLAQAEAVADLIDASTEAAARSAARSLSGDFSRQITHLRDGLIE 179

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R+ +EA LDF EEE +      +    +  L   ++  +   + G ++R G ++VI G 
Sbjct: 180 LRALVEATLDFPEEE-IDFLQRADAHGRLARLAERLAGLLDTARQGALLREGLRVVIAGQ 238

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIV 284
            NAGKSSL NALA  ++AIVT IPGTTRD ++  + +EG  V + DTAG+R   +  D V
Sbjct: 239 PNAGKSSLLNALAGAELAIVTPIPGTTRDKISETIQIEGVPVHVIDTAGLRSDEQAGDEV 298

Query: 285 EKEGIKRTFLEVENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYS 333
           E+ GI R++  +  AD +LLL ++  + E ++           P ++  I +  K+D   
Sbjct: 299 ERIGISRSWQAIAEADAVLLLHDLTREHEPAYSAADTAIAQRLPADVGLIHVHNKADAAP 358

Query: 334 TYT-------------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRH 379
                           +    ++S+ T +G++    +   +    +   P  +  + +RH
Sbjct: 359 EQAARVAARLAARQAGDAAGVVLSARTHDGID--ALRAALLARAGWHAAPEGVFIARERH 416

Query: 380 LYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437
           +  L     ++  A     + D  LD++AE LR A  +L +ITG    + LL  IF +FC
Sbjct: 417 VRALRAAATHVTAAQGWAEQSDSALDLLAEELRSAHDALAEITGSYSSDDLLGDIFGRFC 476

Query: 438 IGK 440
           IGK
Sbjct: 477 IGK 479


>gi|37522021|ref|NP_925398.1| tRNA modification GTPase TrmE [Gloeobacter violaceus PCC 7421]
 gi|46577365|sp|Q7NHT3|MNME_GLOVI RecName: Full=tRNA modification GTPase mnmE
 gi|35213020|dbj|BAC90393.1| glr2452 [Gloeobacter violaceus PCC 7421]
          Length = 453

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 157/456 (34%), Positives = 247/456 (54%), Gaps = 26/456 (5%)

Query: 6   ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPF-PRKASLRYFFGLDGRI 60
           +TI A++T  +P   ++ I+RLSG     + +  F  + K+ F   +    +F   DG I
Sbjct: 3   DTICAIATAIVPQQGSVGIVRLSGSEALALAKRVFRLRGKQAFESHRIHYGHFLDADGGI 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L++   +P SFT ED  EFH HGGIAV+  IL    ++   RLA PGEF+ RAF N
Sbjct: 63  LDECLVLYMQAPRSFTREDVVEFHCHGGIAVIQQILRRCVEL-GARLARPGEFTLRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL EAE++A+L+S+ +    RL++ G++G+L+    Q       + + +EA LDF  
Sbjct: 122 GRIDLTEAEAVAELVSARSPEAARLAVGGLAGKLAGEVRQLRSGCLDLLAELEARLDF-- 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+D+    +  V  +I          ++    GE++R G K+ I+G  N GKSSL NA +
Sbjct: 180 EDDLPPLDTGAVRANIGQSLAHARRLMATSTRGELLRTGLKVAIVGRPNVGKSSLLNAWS 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + D AIVTD+PGTTRDV+   L+++G  V++ DTAGIRE  D VE+ GI+R+      AD
Sbjct: 240 RTDRAIVTDLPGTTRDVVESMLNVQGIPVQVLDTAGIREATDTVERIGIERSHAAAREAD 299

Query: 301 LILLLKEINSKKEISFPKNIDF--------IFIGTKSDLYS--TYTEEYDHLISSFTGEG 350
           L+LL+  I+  +  +   +  F        I +  KSDL     YT     L +  T   
Sbjct: 300 LVLLV--IDRTEGWTCADSDIFAQVRERPVIVVVNKSDLEGPPVYTPSRGVLATVPTAAP 357

Query: 351 LEELINKIKSILSNKFKKLPFSIP------SHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           + + I+ ++  +     +  FS+       + +++   +   V  + +    E    +D 
Sbjct: 358 VGDGIDALEGAILAALGQEAFSVADGDFAVNERQYEALVRAEVALVRVVETVEAALPIDF 417

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +LR A+ +LG++TG    E +L+ IFSKFCIGK
Sbjct: 418 WTIDLRAAAHALGEVTGESVTEAVLERIFSKFCIGK 453


>gi|226355396|ref|YP_002785136.1| tRNA modification GTPase TrmE [Deinococcus deserti VCD115]
 gi|226317386|gb|ACO45382.1| putative tRNA modification GTPase [Deinococcus deserti VCD115]
          Length = 439

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/450 (32%), Positives = 234/450 (52%), Gaps = 33/450 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGRIL 61
           +TI A++T    + + I+R+SGP    V + I   ++   R    R+ FG     DG +L
Sbjct: 8   DTIAAIATAPGSAGVGIVRVSGPEALTVADGIFSGRRTPSRIRGGRFVFGQLIAADGEVL 67

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+GL +VF  P S+TGED AE   HG  AV+  +L  + ++   RLA PGEF+ RA+ +G
Sbjct: 68  DEGLCLVFRRPHSYTGEDVAELQTHGSPAVLGRVLSRVLEL-GARLARPGEFTLRAYLSG 126

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++  L+ ++T+  RR +  G+SG L +   +    +T   + ++A LD+ EE
Sbjct: 127 RLDLAQAEAVLGLVEAQTDAARRQASLGLSGALGTRVARIGANITRTLAAVQAMLDYPEE 186

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
                   ++    +   + D+S  +   + G++   G ++ ++G  N GKSSL NAL  
Sbjct: 187 ----GVPEEDRELPLQAAEQDLSELVQSARAGQVATRGARLALIGRPNVGKSSLLNALLG 242

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            + +IVT IPGTTRD L   ++L G  V + DTAGIR T D VE  G+++       ADL
Sbjct: 243 YERSIVTPIPGTTRDYLEAGVELAGVPVTLVDTAGIRHTTDQVEAAGVRQAVALAGAADL 302

Query: 302 ILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           +L L++    +E      P+    I + TK+DL   + +     +S+ TGEGL EL   I
Sbjct: 303 VLALEDGQQPREPLPTELPEGARVIRVQTKADLEPAWNDPGALRVSAVTGEGLPELREAI 362

Query: 359 KSIL------SNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLR 410
            + L      S  +        + +R L H+ Q  R L  ++AS          + E LR
Sbjct: 363 HAALLGDAARSEAWLTTERQADAARRALGHV-QAARTLPDDLASWE--------LEEALR 413

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +L  +TG    E ++D +F  FC+GK
Sbjct: 414 ----ALSDLTGRDVQEDVVDAVFRNFCVGK 439


>gi|116072006|ref|ZP_01469274.1| tRNA modification GTPase [Synechococcus sp. BL107]
 gi|116065629|gb|EAU71387.1| tRNA modification GTPase [Synechococcus sp. BL107]
          Length = 451

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 251/445 (56%), Gaps = 34/445 (7%)

Query: 18  SAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFG----LDG-RILDKGLLIVFP 70
             I++IRLSGP   QV + +  C  ++ +    S R  +G    +DG R LD+ LL++  
Sbjct: 19  GGIAVIRLSGPVAEQVGQAVVRCPGRQEW---GSHRILYGHVMAVDGQRRLDEVLLLLMR 75

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
           +P SFTGED  E H HGG+  V  ++E + + P +R A PGEFS+RA  NG++DL +AE+
Sbjct: 76  APRSFTGEDVVEIHCHGGVMAVQQVMERVLEQPGVRRALPGEFSQRAVLNGRLDLTQAEA 135

Query: 131 LADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           ++ L+S+ +     L+M G+ G     +++L  + +D+LT +    EA +DF  E+D+  
Sbjct: 136 VSALVSARSRRAADLAMAGLDGGIQARITALRERLLDQLTEL----EARVDF--EDDLPP 189

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                +LN++  ++ ++ + ++ G+ G+ +R+G ++ ++G  N GKSSL N L++++ AI
Sbjct: 190 LDGTALLNELQAVRTELLALVADGERGDALRHGLRVALVGRPNVGKSSLLNRLSRRERAI 249

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL- 305
           VT++PGTTRD+L  ++ L+G  + + DTAGIR T+D VE+ GI R+   + +ADL+LL+ 
Sbjct: 250 VTELPGTTRDLLESEIVLDGVPITLMDTAGIRATNDAVEQLGIARSEEALMSADLVLLIV 309

Query: 306 ------KEINSKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISSFTGEGLEELINK- 357
                  E +++     P  +  + +  KSDL       E D   S+  G G + L+   
Sbjct: 310 DGHAGWTETDAQLLARIPNAVPRVVVANKSDLDGPPLPREVDVQFSALNGAGEDALVQVL 369

Query: 358 IKSILSNKFKKLPFSIPSHKRH--LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
           ++   +     +  S+ + +R       +   R  E+A   ++    D    +LR A   
Sbjct: 370 LERCGAGDAAAIVLSLNTRQRDLASAAAAALARSHEVA---QQQLPWDFWTIDLREAIRG 426

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG+ITG    E +L+ +FS+FCIGK
Sbjct: 427 LGEITGEELTEAVLERVFSRFCIGK 451


>gi|17232169|ref|NP_488717.1| tRNA modification GTPase TrmE [Nostoc sp. PCC 7120]
 gi|21363007|sp|Q8YN91|MNME_ANASP RecName: Full=tRNA modification GTPase mnmE
 gi|17133814|dbj|BAB76376.1| thiophen / furan oxidation protein [Nostoc sp. PCC 7120]
          Length = 459

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 244/460 (53%), Gaps = 32/460 (6%)

Query: 7   TIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----D 57
           TI A++T  +P   ++ I+R+SG     + +  F    K+ +    S R  +G       
Sbjct: 6   TIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFDAPGKQVWE---SHRILYGYIRHPQT 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +I+D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ RA
Sbjct: 63  RQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQVLQ-LCLESGARLAQPGEFTLRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AES+ADL+ + +    + ++ G+ G+L+    Q       I + IEA +D
Sbjct: 122 FLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F  EED+     + +++DI  +  +IS  ++    GE++R G K+ I+G  N GKSSL N
Sbjct: 182 F--EEDLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           A ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIRET D VEK G++R+     
Sbjct: 240 AWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 299

Query: 298 NADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSDLYST-------YTEEYDHLIS 344
            ADL+LL  +         +EI    K+   I +  K DL          Y E    ++ 
Sbjct: 300 TADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSLEYPENITQIVH 359

Query: 345 SFTG--EGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           +     +G++ L   I  I+ + K +     +  ++R    L+Q    LE       +  
Sbjct: 360 TAAAQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQVQATITQQL 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 420 PLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 459


>gi|77748780|ref|NP_644664.2| tRNA modification GTPase TrmE [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 446

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 150/450 (33%), Positives = 245/450 (54%), Gaps = 14/450 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +   +   PR A    F    G +
Sbjct: 1   MSSSTSTIVAIASAAGIGGVGIVRLSGPQSVQIAAHLGIARMQ-PRHAHYARFRDGHGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       + LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSQRVDALAETLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  +      +V + +   +N ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 EP-LDTLGGNQVRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297

Query: 301 LILLL---KEINSKKEISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGL 351
           L L++   +++ + ++ +    ID +    +I  K DL       +     +S+ TG+GL
Sbjct: 298 LALVVLDARDLQAARD-AIGDAIDTVPRQLWIHNKCDLLGNAASLDANAIAVSAVTGQGL 356

Query: 352 EELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           E+L  +++++ L +    +     +  RH+  L +  ++ + A L      L++ AE LR
Sbjct: 357 EQLHIRLRALALGDGVDSVDGEFSARTRHVQALRRAEQHADAADLELGFEQLELAAEELR 416

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 417 LAHEALGEITGKLSADDLLGKIFSSFCIGK 446


>gi|78778577|ref|YP_396689.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9312]
 gi|123554736|sp|Q31CZ2|MNME_PROM9 RecName: Full=tRNA modification GTPase mnmE
 gi|78712076|gb|ABB49253.1| tRNA modification GTPase trmE [Prochlorococcus marinus str. MIT
           9312]
          Length = 460

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 168/447 (37%), Positives = 242/447 (54%), Gaps = 35/447 (7%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPSPE 73
            ++IIR+SG      C+ I + K  +  + S R F G        + +D+ L++V  SP 
Sbjct: 24  GVAIIRVSGKDSINSCKKIVQTKSKYAWE-SHRVFHGFILENKQNKFIDEVLILVMKSPN 82

Query: 74  SFTGEDSAEFHVHGGIAVVNGILEEL-AKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
           SFTGED  E H HGGI +VN +L+ L +    +RLANPGEFS+RAF NGKIDL +AES+ 
Sbjct: 83  SFTGEDVVELHCHGGIILVNKVLQRLLSSNSRVRLANPGEFSQRAFLNGKIDLTQAESIN 142

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
            LI++       L+  G+ G++        + L +    IEA +DF  EED  +F   + 
Sbjct: 143 QLINASNTRSAELAFSGVQGKIKKKINDIKNDLINQLCEIEARVDF--EEDFTDFDYNKY 200

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           L +I  +K  I   I   K    I NG  I ++G +N GKSSL N LAKK+ AIVT+IPG
Sbjct: 201 LKNIKKVKEKIELLIENAKRNSYIHNGISIALIGKTNVGKSSLLNLLAKKEKAIVTNIPG 260

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI---- 308
           TTRDV+ ++L +    +KI DTAGIRET + +E  GIK++F +++ +D I+ +  +    
Sbjct: 261 TTRDVIEVNLTINDIPMKIIDTAGIRETHEQIESIGIKKSFRKIKESDFIIYIYSLEEGF 320

Query: 309 --NSKKEIS-FPKNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEELINKIKS 360
               KK I   PK      +G K DL        +      L+S    +G   LI+ I  
Sbjct: 321 NKEDKKIIQEIPKEKLITILGNKKDLIDCKNINSNELKNTILMSIKNNDGERLLIDTI-- 378

Query: 361 ILSNKFKKLP-FSIPSHKRHLYHLSQTVRYLEMASLNEKDC------GLDIIAENLRLAS 413
           I     K++   +I  ++RHL +LS       +++LN+ D         D+++  LR   
Sbjct: 379 IKKCGLKQVENINIFLNERHLTNLSSC-----LSNLNDTDVIIKNKLPFDLLSIELRDGI 433

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L KITG    E+LLD IFSKFCIGK
Sbjct: 434 QNLSKITGQELTEELLDNIFSKFCIGK 460


>gi|90194102|gb|ABD92612.1| ThdF [Actinobacillus capsulatus]
          Length = 436

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 155/438 (35%), Positives = 243/438 (55%), Gaps = 29/438 (6%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTG
Sbjct: 6   GGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTG 64

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++ADLI +
Sbjct: 65  EDVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LN
Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI+   N +     QG    I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTT
Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTT 240

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL+ +   +   
Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAE 300

Query: 315 SF-----------PKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTGEGLEELINK 357
           +F           P+NI    I  K DL   S   +E D      +S+ T  G++ L   
Sbjct: 301 AFKTEWADFLAKLPQNIPVTVIRNKVDLSGESEGLQELDGFTLIRLSAQTKVGVDLLREH 360

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVS 415
           +K+ +  +         + +RHL  L     +LE     L +   G +++AE LR+   +
Sbjct: 361 LKNSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNA 418

Query: 416 LGKITGCVDVEQLLDIIF 433
           L +ITG    + LL  IF
Sbjct: 419 LSEITGQFTSDDLLGNIF 436


>gi|15806039|ref|NP_294740.1| tRNA modification GTPase TrmE [Deinococcus radiodurans R1]
 gi|14195298|sp|Q9RVL1|MNME_DEIRA RecName: Full=tRNA modification GTPase mnmE
 gi|6458744|gb|AAF10590.1|AE001953_4 thiophene and furan oxidation protein [Deinococcus radiodurans R1]
          Length = 443

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/448 (32%), Positives = 233/448 (52%), Gaps = 28/448 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LDGRIL 61
           ++TI AV+T    + + I+R+SGP   ++ + + + K+        R+ FG    D  +L
Sbjct: 12  QDTIAAVATAPGSAGVGIVRVSGPRALEIADGLFRGKRRPSATPGGRFLFGELHADEELL 71

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+GL +VF  P S+TGED AE   HG  AV++ +L     +   RLA PGEF+ RA+  G
Sbjct: 72  DEGLCLVFRGPRSYTGEDVAEVQTHGSPAVLSRVLARTLDL-GARLARPGEFTLRAYLAG 130

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++  L+ + TE  RR S  G+SG LS         LT   + I+A LD+ EE
Sbjct: 131 RLDLTQAEAVLGLVEASTETARRQSALGLSGALSERVAGVARALTRTLAAIQALLDYPEE 190

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
                   ++    +L  ++ +   ++    G I   G ++ ++G  NAGKSSL NAL  
Sbjct: 191 ----GVPDEDRAAPLLGAQSALEELLASAHAGRISTRGARLALIGRPNAGKSSLLNALLG 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            + +IVT +PGTTRD L   L+L G  V + DTAG+RET+D++E  G+++      NADL
Sbjct: 247 YERSIVTPLPGTTRDYLEAGLELAGVPVTLVDTAGLRETEDLIEAAGVRQAVALAGNADL 306

Query: 302 ILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           +L+L++ +  +E      P     + + TK+DL + +T+     +S+ TG GL  L   I
Sbjct: 307 VLVLEDGSQPREPLPTELPPTATVLRLRTKADLPAAWTDPAALDVSAVTGAGLPALREAI 366

Query: 359 KSILSNKFKKLPFSIPSH------KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            + L     +    + +       +R L H+ Q  R L            D+    L  A
Sbjct: 367 GAALLGDATRGEAWLTTERQTDTVRRALTHV-QAARTLPD----------DLAGYELEEA 415

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +L ++TG    E ++D +F  FC+GK
Sbjct: 416 LHALAELTGQDVQEDVVDAVFRNFCVGK 443


>gi|4006|emb|CAA49238.1| GTPase [Saccharomyces cerevisiae]
          Length = 526

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 179/497 (36%), Positives = 261/497 (52%), Gaps = 65/497 (13%)

Query: 4   EKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGR-- 59
           ++ TI+A+ST A   SAI IIR+SG    +     +     P  RKA LR  +       
Sbjct: 35  QQPTIYALSTPANQTSAIRIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSCSV 94

Query: 60  ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103
                     +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  +       
Sbjct: 95  KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
           ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W +
Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214

Query: 164 KLTHIRSFIEADLDFSEE--EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNG 219
            +    + + A +DF+++  +++QN       V  +I+ L++ I + + + +   I++NG
Sbjct: 215 TIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTILQNG 274

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAGIRE
Sbjct: 275 IKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIRE 334

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIFIG 326
            + D +E  GI R   +   +DL L + +     ++  P++I              I + 
Sbjct: 335 KSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKL-LPEDILAHLSSKTFGNKRIIIVV 393

Query: 327 TKSDLYST--YTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            KSDL S    T+  + L            +S  T EG+E LI    S L++ F+ L  S
Sbjct: 394 NKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLI----STLTSNFESLSQS 449

Query: 373 ------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CV 423
                 +   KR    L   V Y        KD   DI+   ENLR AS  + KITG  +
Sbjct: 450 SADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAI 509

Query: 424 DVEQLLDIIFSKFCIGK 440
            +E++LD +FSKFCIGK
Sbjct: 510 GIEEILDSVFSKFCIGK 526


>gi|110638429|ref|YP_678638.1| tRNA modification GTPase TrmE [Cytophaga hutchinsonii ATCC 33406]
 gi|123354534|sp|Q11TG8|MNME_CYTH3 RecName: Full=tRNA modification GTPase mnmE
 gi|110281110|gb|ABG59296.1| tRNA modification GTPase trmE [Cytophaga hutchinsonii ATCC 33406]
          Length = 460

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 159/452 (35%), Positives = 250/452 (55%), Gaps = 23/452 (5%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           I A+++     AI +IRLSGP  F +    F  K     P           +GRILD+ +
Sbjct: 13  IVALASPQGIGAIGVIRLSGPQAFDITSSVFPSKNIAAVPTHTVHVGNIEDEGRILDEVV 72

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           + VF  P+SFT ED  E   HG   +V  +L+ L +    R A PGEF+ RAF NG+ DL
Sbjct: 73  VTVFKGPKSFTKEDVVEISCHGSTFIVKELLQLLLR-KGARHAKPGEFTMRAFLNGRFDL 131

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLISS++    +++++ M G  S    +  ++L H  S +E +LDFSEE DV+
Sbjct: 132 AQAEAVADLISSDSHASHQVALQQMRGGFSDEIRKLREQLIHFASMVELELDFSEE-DVE 190

Query: 186 NFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            F+ +  L  ++  +K  I   I    LG +I+NG   VI+G  NAGKS+L N L  ++ 
Sbjct: 191 -FADRTQLRKLIHEIKRVIDRLIHSFSLGNVIKNGVPTVIIGKPNAGKSTLLNTLLNEEK 249

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV++I GTTRD +  +L++EG   +  DTAG+RE  D +E  G+KRT  ++  A L++ 
Sbjct: 250 AIVSEIAGTTRDFIEDELNVEGITFRFIDTAGLREATDAIEAMGVKRTREKMTQASLVIY 309

Query: 305 LKEINSKKEISFPKNID--------FIFIGTK----SDLYSTYTEEYDHL--ISSFTGEG 350
           L ++ S  E    ++++        F+ +G K     D   T     D +  IS+    G
Sbjct: 310 LFDVKSTSERELIRDLEELKALKAPFLVVGNKIDKREDAIITTFRNIDGIIYISAKQNIG 369

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAEN 408
           +EEL   +  I+  +  K   ++ ++ RH   L +T + L+  +  ++ +  G D++A++
Sbjct: 370 IEELKQNLLEIIQYESFKQNDTLVTNMRHYESLRETRKALDEVLTGMDSQVPG-DLLAQD 428

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +R +   LG+ITG +  + LLD IFSKFCIGK
Sbjct: 429 IRQSLFHLGEITGDISTDDLLDNIFSKFCIGK 460


>gi|308490486|ref|XP_003107435.1| hypothetical protein CRE_14041 [Caenorhabditis remanei]
 gi|308251803|gb|EFO95755.1| hypothetical protein CRE_14041 [Caenorhabditis remanei]
          Length = 443

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 157/454 (34%), Positives = 250/454 (55%), Gaps = 34/454 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+S+G LPSAI++ R+SGP    V   + ++K   P+       +  + RI+D+ + 
Sbjct: 4   TIFALSSGTLPSAIAVFRVSGPQSLPVLRQLSRRKIWTPKMMEYTKLYDSERRIIDEAMA 63

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP P++FTGED+AEF +HG  AV       L+++ N+R A  GEF+RRAF NGK+ + 
Sbjct: 64  VYFPGPKTFTGEDTAEFFLHGSQAVATKFATCLSEIENVREAKRGEFTRRAFHNGKMSIS 123

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
               L  LI S TE +RR +   M G + ++  +   KL  I S +   +DF E  ++Q 
Sbjct: 124 GVRGLDRLIRSRTEKERRAAFGKMRGGVRAV--EIRKKLVQILSKLFVIIDFGEHVELQL 181

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             ++  +++IL    +I+  I+     E  + G  IV+ G  N+GKSS+ N LA  DVAI
Sbjct: 182 EEAQRDVSEIL---QEINRMIAAWNGAERAQRGLNIVLYGRPNSGKSSILNQLAHDDVAI 238

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLL 305
           V+ IPGTTRD L   L + G L +++DTAGIR  TDD++E EG++R    +E AD+I+++
Sbjct: 239 VSSIPGTTRDSLVTSLQINGVLCRLTDTAGIRRLTDDVIEAEGMRRAQQRLECADIIIVV 298

Query: 306 KE-----------INSKKEISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSF-- 346
            +           +N  +E+   ++   I +  K+DL   Y E      +  H++S++  
Sbjct: 299 VDPESTSDDVAAILNDVEELKSGES-KVIIVKNKTDLKLPYPEVLIDSMKKCHVVSTYAT 357

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
           +  G EEL NK+ S++     +  F + +    L   S  +      S+  +D    I+ 
Sbjct: 358 SSNGCEELRNKLGSLVEELCPEANFLLDAE--LLRKCSDEL----TCSMLCQDAA--IMC 409

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++  A  S+G++T  +  E +LD IFSKFCIGK
Sbjct: 410 SHIETALESIGELTEGIVNENVLDGIFSKFCIGK 443


>gi|168218051|ref|ZP_02643676.1| tRNA modification GTPase TrmE [Clostridium perfringens NCTC 8239]
 gi|182379938|gb|EDT77417.1| tRNA modification GTPase TrmE [Clostridium perfringens NCTC 8239]
          Length = 458

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 161/463 (34%), Positives = 266/463 (57%), Gaps = 33/463 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--------KKKPFPRKASLRYFFG 55
           E +TI A++T      I+IIR+SG    ++   I +          KP+    ++RY   
Sbjct: 3   EFDTIAAIATALGEGGIAIIRVSGNKALEIVNKIFRGINGKDLLDIKPY----TMRYGHM 58

Query: 56  LD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           +D    I+D+ ++     P SFT ED+ E + HGGI   N +L+ + K    RLA PGEF
Sbjct: 59  IDENNEIIDEVIVSFMKGPRSFTAEDTVEINCHGGIVATNKVLQNVIK-AGARLAEPGEF 117

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG+IDL +AE++ D+I+++TE+  + +M    G LS+       +   I + IE
Sbjct: 118 TKRAFLNGRIDLSQAEAVMDIITAKTELSMKSAMTQSQGRLSTEINNLRKEALDILALIE 177

Query: 174 ADLDFSEE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
            D+DF+E+ E+       +V  D++ L+  +++ I     G++IR+G  +VI+G  N GK
Sbjct: 178 YDVDFTEDDEEPDETIPVKVKEDVITLRGKVNNLIDTADEGKLIRDGLSMVIVGKPNVGK 237

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NAL  +  AIVTDI GTTRDV+   ++L+G  V++ DTAGIRET+D+VEK G++++
Sbjct: 238 SSLLNALLNEKRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAGIRETEDVVEKIGVEKS 297

Query: 293 FLEVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHL--- 342
             ++  ADL++L+    +E++   K+ I + K+  +I +  K DL    + E  D+L   
Sbjct: 298 KEKINEADLVILMLDTSRELDEEDKEIIDYIKDRKYIVLLNKVDLDRKLSSEIVDNLENK 357

Query: 343 --ISSFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
             +S+ TG G+++L +KIK +  N     + +  +   HK  LY  S+ +    +  LN 
Sbjct: 358 IELSAKTGFGIDDLKSKIKDLFFNGSIDAESVMVTNTRHKEALYRASENLDG-ALNGLNN 416

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  LD+++  +  A  +LG+ITG    E L++ IF++FC GK
Sbjct: 417 NEF-LDLVSIYVTSALRALGEITGAELEEDLVNKIFAEFCCGK 458


>gi|298490946|ref|YP_003721123.1| tRNA modification GTPase TrmE ['Nostoc azollae' 0708]
 gi|298232864|gb|ADI64000.1| tRNA modification GTPase TrmE ['Nostoc azollae' 0708]
          Length = 464

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 155/462 (33%), Positives = 247/462 (53%), Gaps = 35/462 (7%)

Query: 7   TIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRYFFGL----- 56
           TI A++T  +P   ++ I+R+SG     + + +       PR+    S R  +G      
Sbjct: 10  TIAAIATAVVPQQGSVGIVRVSGDKAIAIAQTLFSA----PRRQVWESHRILYGYIRQPQ 65

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +++D+ LL++  +P SFT ED  EFH HGGI  V  +L+ L      RLA PGEF+ R
Sbjct: 66  TRQLVDEALLLIMKAPRSFTREDVVEFHCHGGIIAVQQVLQ-LCLENGARLAQPGEFTLR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AES+ADL+ +++    + ++ G+ G+L+    Q   +   I + IEA +
Sbjct: 125 AFLNGRLDLTQAESVADLVGAKSPQAAQTALAGLQGKLAHPIRQLRAQCLDILAEIEARI 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF  EED+     + ++++I  +  +I+  ++    GE++R G K+ I+G  N GKSSL 
Sbjct: 185 DF--EEDLPPLDEQRIISEIDQVTLEITKFLATKDQGELLRTGLKVAIVGRPNVGKSSLL 242

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NA ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIRET D VEK G++R+    
Sbjct: 243 NAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETADQVEKIGVERSRRAS 302

Query: 297 ENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
             ADL+L               + +++  +  I     ID I I  K  L S        
Sbjct: 303 SAADLVLFTIDASAGWTQADQEIYEQVKHRPVILVINKIDLISIAEKQTLQSKIQSPKSK 362

Query: 342 LISSFT-GEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
           ++++    +G++ L   +  I+ + K +     +  ++R    L++    LE   +   +
Sbjct: 363 IVTAAAQNQGIDSLETAVLEIVKAGKVQAADIDLAINQRQAAALTKAKISLEQVQVTIIE 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LD    +LR A  +LG+ITG    E +LD IFSKFCIGK
Sbjct: 423 QLPLDFWTIDLRGAIYALGEITGEEVTESVLDRIFSKFCIGK 464


>gi|262118592|pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
           Folinic Acid And Zn
          Length = 462

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 244/460 (53%), Gaps = 32/460 (6%)

Query: 7   TIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----D 57
           TI A++T  +P   ++ I+R+SG     + +  F    K+ +    S R  +G       
Sbjct: 9   TIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFDAPGKQVWE---SHRILYGYIRHPQT 65

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +I+D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ RA
Sbjct: 66  RQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQVLQ-LCLESGARLAQPGEFTLRA 124

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AES+ADL+ + +    + ++ G+ G+L+    Q       I + IEA +D
Sbjct: 125 FLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARID 184

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F  EED+     + +++DI  +  +IS  ++    GE++R G K+ I+G  N GKSSL N
Sbjct: 185 F--EEDLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           A ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIRET D VEK G++R+     
Sbjct: 243 AWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302

Query: 298 NADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSDLYST-------YTEEYDHLIS 344
            ADL+LL  +         +EI    K+   I +  K DL          Y E    ++ 
Sbjct: 303 TADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSLEYPENITQIVH 362

Query: 345 SFTG--EGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           +     +G++ L   I  I+ + K +     +  ++R    L+Q    LE       +  
Sbjct: 363 TAAAQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQVQATITQQL 422

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 423 PLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 462


>gi|148381580|ref|YP_001256121.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC
           3502]
 gi|153931640|ref|YP_001385957.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC
           19397]
 gi|153937169|ref|YP_001389364.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. Hall]
 gi|168181110|ref|ZP_02615774.1| tRNA modification GTPase TrmE [Clostridium botulinum NCTC 2916]
 gi|170756593|ref|YP_001783278.1| tRNA modification GTPase TrmE [Clostridium botulinum B1 str. Okra]
 gi|226951095|ref|YP_002806186.1| tRNA modification GTPase TrmE [Clostridium botulinum A2 str. Kyoto]
 gi|166200473|sp|A7FPM0|MNME_CLOB1 RecName: Full=tRNA modification GTPase mnmE
 gi|166200474|sp|A5I816|MNME_CLOBH RecName: Full=tRNA modification GTPase mnmE
 gi|205829143|sp|B1IHR9|MNME_CLOBK RecName: Full=tRNA modification GTPase mnmE
 gi|148291064|emb|CAL85201.1| probable tRNA modification GTPase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152927684|gb|ABS33184.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC
           19397]
 gi|152933083|gb|ABS38582.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. Hall]
 gi|169121805|gb|ACA45641.1| tRNA modification GTPase TrmE [Clostridium botulinum B1 str. Okra]
 gi|182668135|gb|EDT80114.1| tRNA modification GTPase TrmE [Clostridium botulinum NCTC 2916]
 gi|226841162|gb|ACO83828.1| tRNA modification GTPase TrmE [Clostridium botulinum A2 str. Kyoto]
 gi|322807967|emb|CBZ05542.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Clostridium
           botulinum H04402 065]
          Length = 461

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 164/469 (34%), Positives = 264/469 (56%), Gaps = 42/469 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFFG 55
           E +TI AV+T      ISIIR+SG     +   I K K        KP+    S+RY F 
Sbjct: 3   EFDTIAAVATPVGEGGISIIRISGDKSLDIVSSIFKGKNDRTLDDIKPY----SMRYGFI 58

Query: 56  LDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
           ++     ++D+ L+     P SFT ED+ E + HGG+     IL+EL K    RLA PGE
Sbjct: 59  IEKESKEMIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIK-SGARLAEPGE 117

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NG+IDL +AE++ D+I S+T++  + +++   G LS       +++  I + I
Sbjct: 118 FTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKIIAHI 177

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +D+ E+ D++  + +++  D+  + N I + IS  + G+I+R G   VI+G  N GK
Sbjct: 178 EATVDYPED-DLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVGK 236

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NAL  ++ AIVT+IPGTTRDV+   ++++G  +KI DTAGIRET+D+VEK G++++
Sbjct: 237 SSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVEKS 296

Query: 293 FLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
             +++ ADL++ + +++ K +      + F KN  +I +  K DL     EE +H I   
Sbjct: 297 KEKIDEADLVIFMLDLSRKIDEEDIEIMDFIKNKKYIVLLNKLDLNKDLNEE-NHFIKEL 355

Query: 347 -----------TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT----VRYLE 391
                         GL EL   IK++  +   K    I ++ RH   L ++    ++ +E
Sbjct: 356 DSKYIIKTSVKNNSGLNELKECIKNLFFSGEIKSDELIVTNARHQEALIRSRESCIQAIE 415

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             S    +  +D+ + ++R A   LG+ITG    E ++D IFS+FC+GK
Sbjct: 416 TLS---DEISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461


>gi|154276802|ref|XP_001539246.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414319|gb|EDN09684.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1231

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 174/545 (31%), Positives = 269/545 (49%), Gaps = 114/545 (20%)

Query: 7    TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-----GRI 60
            TI+A+ST    +AI+I+R+SGP+C Q+ + +C K+  P PR A+LR  F          I
Sbjct: 679  TIYALSTAPGRAAIAIVRVSGPACVQIYDALCPKRPLPNPRVAALRTLFDPSVPPSVNSI 738

Query: 61   LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-----------MPNLRLAN 109
            LD+ +++ FP+P + TGED  E H+HGG AVV  +L  + +           MP++R A 
Sbjct: 739  LDRAVVLHFPAPNTVTGEDVLELHIHGGPAVVKAVLNAIPRCAGAFSNEKIAMPSIRYAE 798

Query: 110  PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
            PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G SG L+  Y +W  +L + R
Sbjct: 799  PGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERWRQQLLYAR 858

Query: 170  SFIEADLDFSE----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
              +EA +DFSE    +E ++ F S  +  ++  L   I+ HI     GE++R+G ++ +L
Sbjct: 859  GEMEALIDFSEDQHFDESIEEFVSS-ITGEVRNLVRQINLHIENASKGELLRSGIRVALL 917

Query: 226  GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---- 281
            G  NAGKSSL N +  ++ AIV+   GTTRD++ + +D+ GY  K  D AG+R       
Sbjct: 918  GAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGYFCKFGDMAGLRSGHIARS 977

Query: 282  -----DIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF---PKNID--------- 321
                   VE+EGI+R       +D++++   L+E ++   +     P+ +D         
Sbjct: 978  GSMPIGAVEQEGIRRAKARALESDVVIVVLSLEESDNGTGVKLVLEPEVVDAVRSCIALE 1037

Query: 322  --FIFIGTKSDLYS--TYTEEYDH-----------------------LISSFTGEG---- 350
               I    K D YS  TYT                            LIS    E     
Sbjct: 1038 KHMIVAVNKFDKYSPTTYTARTQQKFVDSLTEEISSVEPRLTQDQIFLISCREAENEVSQ 1097

Query: 351  ----------LEELINKIKSI-----LSN---KFKKLPF--SIPSHKRHLYHLSQTVRYL 390
                      L ELI   K +     L N   +F KL +  S+    R   +L + V++L
Sbjct: 1098 EADPGNIQKFLGELIRTFKRMSTPSELDNGNEQFDKLYWEDSLGVTHRQSSNLQKCVQHL 1157

Query: 391  ------------EMASLNEKDCGLDII--AENLRLASVSLGKITG---CVDVEQLLDIIF 433
                          A+  + +   DI+  AE+LR A+  L KITG     DVE +L ++F
Sbjct: 1158 NDFLSQTCQTPDNAANAEQIEVNFDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVVF 1217

Query: 434  SKFCI 438
             K+ +
Sbjct: 1218 EKYSL 1222


>gi|260434789|ref|ZP_05788759.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8109]
 gi|260412663|gb|EEX05959.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8109]
          Length = 450

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/450 (32%), Positives = 247/450 (54%), Gaps = 45/450 (10%)

Query: 18  SAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFGL----DGRILDKGLLIVFPS 71
             I++IRLSGP+       +  C  ++ +    S R  +G     +GR LD+ LL++   
Sbjct: 19  GGIAVIRLSGPAAEATGRSVVHCPGRQEW---GSHRVVYGHVMDGEGRRLDEVLLLLMRG 75

Query: 72  PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131
           P SFTGED  E H HGG+  V  +LE++ + P +R A PGEFS+RA  NG++DL  AE++
Sbjct: 76  PRSFTGEDVVEIHCHGGVIAVQRVLEQVLRQPGVRRALPGEFSQRAVLNGRLDLTRAEAV 135

Query: 132 ADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           ++L+++ +     L++ G+ G    ++++L  + +D+LT +    EA +DF  EED+   
Sbjct: 136 SELVAARSRRAAELAIAGLDGGIQAQITALRERLLDQLTEL----EARVDF--EEDLPPL 189

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             + +   +  ++ ++   +  G+ G+ +R G ++ ++G  N GKSSL N L++++ AIV
Sbjct: 190 DGEALQQQLQAVRLELQQLVRDGERGDALRKGLRVALVGRPNVGKSSLLNRLSRRERAIV 249

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           TD+PGTTRD+L  ++ LEG  + + DTAGIR TDD VE+ GI R+   +  AD++LL+ +
Sbjct: 250 TDLPGTTRDLLESEIALEGVPITLLDTAGIRSTDDAVERLGIARSEEALATADVVLLVLD 309

Query: 308 INSKKE-------ISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLEELINKIK 359
            ++             P+ I  I +  K+DL + T+ +  D  +S+  G G  +L+    
Sbjct: 310 GHAGWTSEDAALLARIPEQIPRILVANKADLPAGTFPQPVDVQLSALEGTGEADLVQ--- 366

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE---------NLR 410
            +L  +           +  L  L+Q  R L   +     C  ++ A+         +LR
Sbjct: 367 -VLLER-----CGAAGTEGVLLALNQRQRDLAAQAAEALACSQEVAAQQLPWDFWTIDLR 420

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  +LG+ITG    E +LD +FS+FCIGK
Sbjct: 421 EAIRALGEITGEEITEAVLDRVFSRFCIGK 450


>gi|298375973|ref|ZP_06985929.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_19]
 gi|298267010|gb|EFI08667.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_19]
          Length = 461

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 157/464 (33%), Positives = 252/464 (54%), Gaps = 35/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRY--FFGLDGR 59
           TI A+ST      I++IR+SGP  F++C+ I + KK        +  +L Y    G +  
Sbjct: 3   TICAISTAPGVGGIAVIRVSGPDTFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  VF +P SFTGED+ E   HG   +   IL+ L      R+A PGE+++RAF 
Sbjct: 63  TIDEVIAAVFRAPHSFTGEDTVEITCHGSTYIQQQILQSLIS-SGCRIAQPGEYTQRAFM 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S +  Q RL++  M G  S    +  ++L H  S +E +LDFS
Sbjct: 122 NGKMDLSQAEAVADLIASTSAGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           + E+++ F+ +  L  +      + S ++Q   +G  I+NG  + I+G +NAGKS+L NA
Sbjct: 182 DHEELE-FADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV++I GTTRDV+   +++ G L +  DTAGIRET D +E  GI+R+F  ++ 
Sbjct: 241 LLNEDKAIVSNIHGTTRDVIEDTININGQLFRFIDTAGIRETSDTIEALGIERSFKALDQ 300

Query: 299 ADLILLLKEINSK--------KEISFPK--NIDFIFIGTKSDL--------YSTYTEEYD 340
           A +++L+ ++           +EI+ P+  N   I    K D+        +S  TE + 
Sbjct: 301 AQIVILMYDLTRDLKDFETFYQEIA-PRLTNKSVILAMNKCDVLPASSLPTFSFPTEGWH 359

Query: 341 HLISSFTGE----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
            +  S  G+     L++L+ ++ SI +     +  +   H   L H  + +  ++   LN
Sbjct: 360 QIAISAKGKLHIAELQQLLTEVSSIPTLHQSDIIVTNARHFEALTHALEAIHRVQ-EGLN 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G D I+++LR     L  I G V  +Q+L  IF  FCIGK
Sbjct: 419 SSLSG-DFISQDLRECIFHLSDIVGEVTTDQVLGNIFQHFCIGK 461


>gi|229542320|ref|ZP_04431380.1| tRNA modification GTPase TrmE [Bacillus coagulans 36D1]
 gi|229326740|gb|EEN92415.1| tRNA modification GTPase TrmE [Bacillus coagulans 36D1]
          Length = 461

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 159/465 (34%), Positives = 263/465 (56%), Gaps = 33/465 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLD- 57
           E +TI A+ST     AISI+RLSG +   +   +      KK    P   ++ Y   +D 
Sbjct: 2   EMDTIAAISTPMGEGAISIVRLSGENAIAIANRLFAGVGGKKLVDVPSH-TIHYGKIVDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G  +++ ++ V  +P++FT ED  E + HGG+  VN +L+ + K    RLA PGEF++
Sbjct: 61  DTGETVEEAMVSVMKAPKTFTREDVVEINCHGGLVAVNRVLQLVLK-NGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    +++  M G LS L  +   ++  + + IE +
Sbjct: 120 RAFLNGRIDLSQAEAVMDLIRAKTDKAMNVAIGQMEGRLSKLVKKLRQEILEVVAHIEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  + + +     ++KN+I   +     G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEMTHRMLKEKAQYIKNEIEKLLRTAHQGKILREGLSTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N+L +++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   
Sbjct: 240 LNSLVQENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGVERSRKA 299

Query: 296 VENADLILLLKEINSKKEISFPKN---------IDFIFIGTKSDL-YSTYTEEYDHL--- 342
           ++ ADLILL+  INS + +S P++         +D I I  K DL +    E    L   
Sbjct: 300 LKEADLILLV--INSSEPLS-PEDEALFEAVEGMDVIVILNKWDLPHQVEMESVRELAQG 356

Query: 343 -----ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASL 395
                 S  T EG+E+L + I ++    + +    +  S+ RH+  L+Q +  ++ + + 
Sbjct: 357 AKILTTSLVTEEGMEKLEDAIAAMYFEGQMETGDLTYVSNSRHIALLNQALEAIQDVQNG 416

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +  +DII  +L      LG+I G    E LL+ +FS+FC+GK
Sbjct: 417 IQSNTPIDIIQIDLTRTWDLLGEIIGDTVQESLLNQLFSQFCLGK 461


>gi|90194100|gb|ABD92611.1| ThdF [Actinobacillus genomosp. 1]
          Length = 436

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 154/438 (35%), Positives = 241/438 (55%), Gaps = 29/438 (6%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTG
Sbjct: 6   GGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTG 64

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++ADLI +
Sbjct: 65  EDVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LN
Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI+   N +     QG    I+R G K+VI G  NAGKSSL NALA +D AIVT+I GTT
Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTNIAGTT 240

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +LL+ +   +   
Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIQRAWDEIEQADHVLLMIDSTEQTAE 300

Query: 315 SF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINK 357
           +F           P+NI    I  K DL       +E D      +S+ T  G++ L   
Sbjct: 301 AFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLREH 360

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVS 415
           +K  +  +         + +RHL  L     +LE     L +   G +++AE LR+   +
Sbjct: 361 LKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNA 418

Query: 416 LGKITGCVDVEQLLDIIF 433
           L +ITG    + LL  IF
Sbjct: 419 LSEITGQFTSDDLLGNIF 436


>gi|294627441|ref|ZP_06706025.1| tRNA modification GTPase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598262|gb|EFF42415.1| tRNA modification GTPase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 446

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 150/449 (33%), Positives = 241/449 (53%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++      + I+RLSGP   Q+   +   +   PR A    F    G +
Sbjct: 1   MSSSTSTIVAIASATGIGGVGIVRLSGPQSVQIAAHLGIARMR-PRHAHYARFRDGQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++     +   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIAL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       + LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSQRVDALAETLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  +     K+V + +   +N ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 EP-LDTLGGKQVRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R  +E+E AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARVELERAD 297

Query: 301 LILLLKEINSKKEI--SFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +    +    ID +    +I  K DL       +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDPQAARDAIGDAIDAVPRQLWIHNKCDLLGNAASLDANAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++++ L +    +     +  RH+  L +  ++ + A L      L++ AE LRL
Sbjct: 358 QLHIRLRALALGDGVDSVDGEFSARTRHVEALRRAEQHADAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446


>gi|325926224|ref|ZP_08187582.1| tRNA modification GTPase trmE [Xanthomonas perforans 91-118]
 gi|325543406|gb|EGD14831.1| tRNA modification GTPase trmE [Xanthomonas perforans 91-118]
          Length = 446

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 242/449 (53%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +   +   PR A    F    G +
Sbjct: 1   MSSSASTIVAIASAAGIGGVGIVRLSGPQSVQIAAQLGIARMQ-PRHAHYARFRDGQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFHAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       D LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSRRVDAVADTLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  +      ++ + +   +N ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 EP-LDTLGGNQLRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297

Query: 301 LILLLKEINSKKEI--SFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +    +    +D +    +I  K DL       +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDPQAARDAIGDAVDAVPRQLWIHNKCDLLGNAASLDANAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++++ L +    +     +  RH+  L +  ++++ A L      L++ AE LRL
Sbjct: 358 QLHIRLRALALGDGVDSVEGEFSARTRHVQALRRAEQHVDAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446


>gi|90194110|gb|ABD92616.1| ThdF [Actinobacillus pleuropneumoniae serovar 1]
          Length = 436

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 154/438 (35%), Positives = 242/438 (55%), Gaps = 29/438 (6%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTG
Sbjct: 6   GGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKEQDGTVLDQGIALFFKAPNSFTG 64

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++ADLI +
Sbjct: 65  EDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LN
Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI+   N +     QG    I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTT
Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTT 240

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+RE +D VEK GI+R + E+E AD +LL+ +   +   
Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREANDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAE 300

Query: 315 SF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINK 357
           +F           P+NI    I  K DL       +E D      +S+ T  G++ L   
Sbjct: 301 AFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLREH 360

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVS 415
           +K  +  +         + +RHL  L     +LE     L +   G +++AE LR+   +
Sbjct: 361 LKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNA 418

Query: 416 LGKITGCVDVEQLLDIIF 433
           L +ITG    + LL  IF
Sbjct: 419 LSEITGQFTSDDLLGNIF 436


>gi|323353023|gb|EGA85323.1| Mss1p [Saccharomyces cerevisiae VL3]
          Length = 526

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 179/497 (36%), Positives = 261/497 (52%), Gaps = 65/497 (13%)

Query: 4   EKETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDGR-- 59
           ++ TI+A+ST A   SAI+IIR+SG     +   +       P RKA LR  +       
Sbjct: 35  QQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLXDSSTVPPIRKAILRNIYSPSSCSV 94

Query: 60  ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103
                     +LD  LL+ F +P SFTGED  E HVHGG AVVN IL  +  +       
Sbjct: 95  KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILXAIGSLHDRSSGK 154

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
           ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W +
Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214

Query: 164 KLTHIRSFIEADLDFSEE--EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNG 219
            +    + + A +DF+++  +++QN       V  +I+ L++ I + + + +   I++NG
Sbjct: 215 TIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTILQNG 274

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAGIRE
Sbjct: 275 IKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIRE 334

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIFIG 326
            + D +E  GI R   +   +DL L + +     ++  P++I              I + 
Sbjct: 335 KSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKL-LPEDILAHLSSKTFGNKRIIIVV 393

Query: 327 TKSDLYST--YTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            KSDL S    T+  + L            +S  T EG+E LI    S L++ F+ L  S
Sbjct: 394 NKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLI----STLTSNFESLSQS 449

Query: 373 ------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CV 423
                 +   KR    L   V Y        KD   DI+   ENLR AS  + KITG  +
Sbjct: 450 SADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAI 509

Query: 424 DVEQLLDIIFSKFCIGK 440
            +E++LD +FSKFCIGK
Sbjct: 510 GIEEILDSVFSKFCIGK 526


>gi|255527592|ref|ZP_05394456.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7]
 gi|296186790|ref|ZP_06855191.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7]
 gi|255508725|gb|EET85101.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7]
 gi|296048504|gb|EFG87937.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7]
          Length = 459

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 161/462 (34%), Positives = 264/462 (57%), Gaps = 28/462 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVC----EFICKKKKPFPRKASLRYFFGLD- 57
            E +TI A+ST      ISIIR+SG    ++       + +KK    +  ++RY F ++ 
Sbjct: 2   KEFDTIAAISTVLGEGGISIIRVSGDKALKIVSGLFRGVNEKKLDDIKPYTIRYGFIIEK 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G  LD+ L+    +P SFT ED+ E + HGG+     ILEE+ K    R+A PGEF++
Sbjct: 62  DTGDTLDEVLVSYMKAPRSFTAEDTVEINCHGGVVATQRILEEVVK-NGARIAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I ++TE+  + ++    G++S       +KL  I + IEA 
Sbjct: 121 RAFLNGRIDLSQAEAVIDIIRAKTELSMKSAVAQSKGKVSEEINLIRNKLLEIVAHIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E+ D++  ++ +V   +  +  D+++ +   + G+IIR G   VI+G  N GKSSL
Sbjct: 181 VDYPED-DLEEVTADKVTMQLKDVVGDVNNILKTAEEGKIIREGLNTVIVGKPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N+L ++  AIVT+IPGTTRDV+   ++++G  VKI DTAGIRET+D VEK G++++  +
Sbjct: 240 LNSLLREKRAIVTEIPGTTRDVIEEYINIDGVPVKIVDTAGIRETNDFVEKIGVEKSKEK 299

Query: 296 VENADLILLLKEI-----NSKKE-ISFPKNIDFIFIGTKSDLYSTYTEE--------YDH 341
           +  ADLI+L+ ++     N  +E I + K+  +I +  KSDL     +E        Y  
Sbjct: 300 INEADLIILMLDLSRELDNEDREIIDYIKDKKYIILLNKSDLGGKINKEDIKNLNSNYIV 359

Query: 342 LISSFTGEGLEELINKIKSIL---SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
             S+ TGEGL++L   I+ +        K +  +   HK  L   +++      A  N  
Sbjct: 360 ETSAKTGEGLDKLRECIRELFFKGEVTSKDILITNTRHKEALIRANESCAQALDALKNT- 418

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D+ + ++R A ++LG+ITG    E +++ IFS+FC+GK
Sbjct: 419 -AAIDLASIDIRNAWMNLGEITGDTLEEDIINKIFSEFCLGK 459


>gi|326801518|ref|YP_004319337.1| tRNA modification GTPase mnmE [Sphingobacterium sp. 21]
 gi|326552282|gb|ADZ80667.1| tRNA modification GTPase mnmE [Sphingobacterium sp. 21]
          Length = 456

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 164/454 (36%), Positives = 261/454 (57%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61
           +TI A++T     AI++IRLSGP   ++   + K K    ++AS    FG     DG+IL
Sbjct: 7   DTIVALATPTGSGAIAVIRLSGPQAIEIVNGVFKGKD-LSKQASHTVHFGTIRDEDGKIL 65

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L  +F +P S+T E+  E   HG   +V  I++   +    R A PGEF+ RAF +G
Sbjct: 66  DEVLASIFIAPHSYTRENVVEVSTHGSKYIVESIIKLFIR-KGARAAKPGEFTLRAFLHG 124

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
            +DL +AE++ADLI+S +    +++M+ M G  S+   Q  ++L H  S IE +LDFSEE
Sbjct: 125 GMDLSQAEAVADLIASNSAASHQVAMQQMRGGFSNELKQLREQLIHFASMIELELDFSEE 184

Query: 182 EDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            DV+ F+++  L D IL +   +   I   + G +++NG  IVI G  N GKS+L NAL 
Sbjct: 185 -DVE-FANRSQLKDLILEIIKVLHRLILSFEQGNVLKNGVPIVIAGKPNVGKSTLLNALL 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV+DI GTTRD +  +++++G   +  DTAGIR+T+DI+E +G++RT  +++ A 
Sbjct: 243 NEERAIVSDIAGTTRDTIEDEINIQGVSFRFIDTAGIRDTEDIIEAKGVERTREKMKKAR 302

Query: 301 LILLLKEI--NSKKEISFPK------NIDFIFIGTKSDLYST-YTEEYDHL----ISSFT 347
           L++ L +   ++ +E+S            F+ +  K DL S     +Y+ L    IS+ +
Sbjct: 303 LVIYLVDPVDDAFEEVSIQVADLILLRTPFVLVINKKDLLSPDALAQYEPLNPVFISAKS 362

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           G+G+E L  ++ + +S +   +   + ++ RH+  L +T   LE      +     D +A
Sbjct: 363 GDGVEALKEELLNQVSLRNINVDDVMVTNIRHVEALLKTQASLEKVLYGIDNPITSDFLA 422

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++R A   LG+ITG V  E LLD IFSKFCIGK
Sbjct: 423 MDIRQALHHLGEITGQVSTEDLLDNIFSKFCIGK 456


>gi|320450418|ref|YP_004202514.1| tRNA modification GTPase TrmE [Thermus scotoductus SA-01]
 gi|320150587|gb|ADW21965.1| tRNA modification GTPase TrmE [Thermus scotoductus SA-01]
          Length = 432

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 150/442 (33%), Positives = 245/442 (55%), Gaps = 19/442 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GR 59
           K+ I A++T     AI ++RLSG    +V   + + K P   K   R+  G  +D   G 
Sbjct: 4   KDPICAIATPLGKGAIGVVRLSGEGALEVASRVWRGKDPRKLKGG-RFTLGEVVDPETGE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ LL+VF +P S+TGED+ EFH HG +AV+  +LE L K    RLA PGEF+ RA+ 
Sbjct: 63  VLDQALLLVFRAPRSYTGEDACEFHTHGSMAVLRRVLEALVKA-GARLAGPGEFTFRAYM 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++  L+ +E ++ RR ++  + G  S       D+L  + + I+A LD+ 
Sbjct: 122 NGKLDLAQAEAVLALVEAEGDLARRQALRSLEGSFSRKIAALEDRLLSLLAHIQALLDYP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE  V+   ++ V+ ++L    ++ + ++Q +   + + G ++ ++G  NAGKSSL NAL
Sbjct: 182 EE-GVEPLEARRVIGEVL---EEVEALLAQARSSRLAQRGARLALIGAPNAGKSSLLNAL 237

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + A+V+ IPGTTRD L   L+L G  +   DTAGIR+T D +E+ G++R     E A
Sbjct: 238 LGYERALVSPIPGTTRDYLEAPLELFGIPLVAVDTAGIRDTLDPLERAGVERALRIAEEA 297

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
           DL+L + + ++ +    P     + + TK+DL   + +     +SS TGEGL +L   I+
Sbjct: 298 DLVLYVADRSAPRPSLPPLPPRTLKVATKADLPPLWEDAEFIPVSSVTGEGLGQLKEAIR 357

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
             L  K     + +   +    H ++  R LE  +L E     D++   L  A  +L  +
Sbjct: 358 EALLGKGGG-EYLLSERQIEALHQARE-RLLEAQNLPE-----DLMGLALEEALKALASL 410

Query: 420 TGCVDV-EQLLDIIFSKFCIGK 440
            G  +V E+++  +F  FC+GK
Sbjct: 411 RGRKEVSEEVVARVFQNFCVGK 432


>gi|78213961|ref|YP_382740.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9605]
 gi|123577422|sp|Q3AGU7|MNME_SYNSC RecName: Full=tRNA modification GTPase mnmE
 gi|78198420|gb|ABB36185.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9605]
          Length = 450

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 142/441 (32%), Positives = 236/441 (53%), Gaps = 27/441 (6%)

Query: 18  SAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFG----LDGRILDKGLLIVFPS 71
             I++IRLSGP+       +  C  ++ +    S R  +G     +GR LD+ LL++   
Sbjct: 19  GGIAVIRLSGPAAEATGRSVVHCPGRQEW---GSHRVVYGHVIDSEGRRLDEVLLLLMRG 75

Query: 72  PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131
           P SFTGED  E H HGG+  V  +LE++ + P +R A PGEFS+RA  NG++DL  AE++
Sbjct: 76  PRSFTGEDVVEIHCHGGVIAVQRVLEKVLRQPGVRRAQPGEFSQRAVLNGRLDLTRAEAV 135

Query: 132 ADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           ++L+++ +     L+M G+ G    E++ L  + +D+LT +    EA +DF  EED+   
Sbjct: 136 SELVAARSRRAAELAMAGLDGGIQAEITVLRERLLDQLTEL----EARVDF--EEDLPPL 189

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             + +L  +  ++ ++   +  G+ G+ +R G ++ ++G  N GKSSL N L++++ AIV
Sbjct: 190 DGEALLQQLQAVRLELQQLVRDGERGDALRQGLRVALVGRPNVGKSSLLNRLSRRERAIV 249

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           TD+PGTTRD+L  ++ LEG  + + DTAGIR TDD VE+ GI R+   +  AD++LL+ +
Sbjct: 250 TDLPGTTRDLLESEIVLEGVPITLLDTAGIRSTDDAVEQLGIARSEQALATADVVLLVLD 309

Query: 308 INSKKEIS-------FPKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLEELINKIK 359
            ++             P  I  I +  K+DL +  + +  D  +S+  G G  +L+  + 
Sbjct: 310 GHAGWTAEDAALLARIPAQIPRILVANKADLPAGAFPQPVDVQLSALEGMGEADLVQALL 369

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
                          + ++                +  +    D    +LR A  +LG+I
Sbjct: 370 ERCGAAGTDGMLVALNQRQRDLAARAAEALARSQEVAAQQLPWDFWTIDLREAIRALGEI 429

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG    E +LD +FS+FCIGK
Sbjct: 430 TGEELTEAVLDRVFSRFCIGK 450


>gi|149248662|ref|XP_001528718.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448672|gb|EDK43060.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 497

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 157/484 (32%), Positives = 260/484 (53%), Gaps = 53/484 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFG--LDGRIL 61
           + TIFA+ST    SAI+++R+SGP    +   + K + P   R AS+R  +   +  ++L
Sbjct: 19  QPTIFALSTPLAKSAIAVVRISGPQSSYIYNKLTKTETPPKNRIASVRKLYSPTVSSKLL 78

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFSR 115
           D+ L + F  P ++TG D  E H+HGGIA++  +LE ++ + +      +R A PGEFS+
Sbjct: 79  DESLTLFFAKPRTYTGLDLLELHLHGGIAIIKAVLEAISALHDPDNGVIIRQAEPGEFSK 138

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           +AF NGK DL   E ++++I++ETE+QR  S+  MSG+   ++ +W   L    + +   
Sbjct: 139 QAFANGKYDLTALEGISEMINAETELQRLASLASMSGQTKDIFNKWRQDLLENVANLTTL 198

Query: 176 LDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           +DF E+ D++  +     V   I  ++++I  ++ + K  E++  G  + ++G  NAGKS
Sbjct: 199 IDFGEDHDLEETALLFDSVSEKIKVMESEIGEYLHRTKSSEVLLKGINLTLVGPPNAGKS 258

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIK 290
           S+ N L+ ++ AIV++I GTTRDVL + L++ G+ V + DTAGIR   E D+I E+EGI+
Sbjct: 259 SILNTLSNREAAIVSNIAGTTRDVLELPLEIGGFKVVLGDTAGIRLLSEADEI-EQEGIR 317

Query: 291 RTFLEVENADLILLLKEINSKKEISFPKNI---------DFIFIGTKSDLY----STYTE 337
           R   + E AD ++++ +      +   KN+           + +  K DLY    +T  +
Sbjct: 318 RAMRKSEAADFVIMVLDPTQITGLDEMKNLLSTLHASGKQILIVLNKEDLYQDRVNTLRD 377

Query: 338 EYDH--------------LISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRH 379
            Y H               IS  TG G+EEL    I + K +++      P  I S  + 
Sbjct: 378 WYLHKLGVAHSPQQISILPISCLTGAGIEELRLEMIKRFK-VITETVSSDPVIISSRVQD 436

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CVDVEQLLDIIFSKF 436
           +        + E     E D   D++   E LR +   +GKITG  + VE++L ++FS F
Sbjct: 437 ILQNDVLYGFKEFFVWKEHD---DVVLATECLRQSIEGIGKITGEAIGVEEILGVVFSNF 493

Query: 437 CIGK 440
           CIGK
Sbjct: 494 CIGK 497


>gi|304439121|ref|ZP_07399040.1| tRNA modification GTPase TrmE [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372480|gb|EFM26067.1| tRNA modification GTPase TrmE [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 457

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 158/461 (34%), Positives = 257/461 (55%), Gaps = 30/461 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFP----RKASLRYFFGLDG 58
           KETI A+ST    + I I+R+SG    ++ + + +   +K       R  S  +    +G
Sbjct: 2   KETIAAISTATGEAGIGIVRMSGEDSVEIADKVFRHIGQKNLTEIKNRMMSYGHIIDENG 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ L++   +P ++T E+  E + HGGI  V  +L  L      R+A  GEF++RAF
Sbjct: 62  KVIDEVLIVKMMAPNTYTRENMVEIYTHGGIISVRRVLNLLLD-NGARIAEAGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ D+I ++T+     S++ + G L+ +  +  D++T +   I A++DF
Sbjct: 121 LNGRLDLSQAEAVIDIIKAKTDESFDQSIKQLEGSLTGIITEISDEVTKMMGIIIANIDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E+ DV+ +  + +LND   +K +I++ I     G ++R+G   VILG  N GKSSL NA
Sbjct: 181 PED-DVEEYQYETLLNDANKVKENINTLIEGSNRGRLLRDGINTVILGKPNVGKSSLLNA 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           + + + AIVTDIPGTTRD++   ++L+G L+KI+DTAGIRET+D VE  G+ R    +E 
Sbjct: 240 MLRYEKAIVTDIPGTTRDIIEDYVNLDGILLKITDTAGIRETEDKVEAIGVSRAVKSIEG 299

Query: 299 ADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
           ADLI+               +LK +  KK I      D     ++ +L S +    D++ 
Sbjct: 300 ADLIIAIFDGSEKFDENDEEILKLLEGKKSIVLVNKADLESKNSEDELKSFFGNR-DYMN 358

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKD 399
            S     + ++ NKIK +    N   K  F I ++ RH+  L +  ++++ A   L  ++
Sbjct: 359 VSIKKGTILDIENKIKDMFFSGNLKAKEEFYI-NNLRHVRALKEATKFIDSAIEGLETRE 417

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LD I  +LR A   LG ITG    E +LD +FS+FCIGK
Sbjct: 418 F-LDCIEVDLRGALDELGNITGETTTEDILDKVFSEFCIGK 457


>gi|90194108|gb|ABD92615.1| ThdF [Actinobacillus lignieresii]
 gi|90194114|gb|ABD92618.1| ThdF [Actinobacillus pleuropneumoniae]
 gi|90194116|gb|ABD92619.1| ThdF [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|90194118|gb|ABD92620.1| ThdF [Actinobacillus pleuropneumoniae]
          Length = 436

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 154/438 (35%), Positives = 241/438 (55%), Gaps = 29/438 (6%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTG
Sbjct: 6   GGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTG 64

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++ADLI +
Sbjct: 65  EDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LN
Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI+   N +     QG    I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTT
Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTT 240

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL+ +   +   
Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAE 300

Query: 315 SF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINK 357
           +F           P+NI    I  K DL       +E D      +S+ T  G++ L   
Sbjct: 301 AFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLREH 360

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVS 415
           +K  +  +         + +RHL  L     +LE     L +   G +++AE LR+   +
Sbjct: 361 LKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNA 418

Query: 416 LGKITGCVDVEQLLDIIF 433
           L +ITG    + LL  IF
Sbjct: 419 LSEITGQFTSDDLLGNIF 436


>gi|188579254|ref|YP_001916183.1| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|226704788|sp|B2SUV8|MNME_XANOP RecName: Full=tRNA modification GTPase mnmE
 gi|188523706|gb|ACD61651.1| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 446

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 150/449 (33%), Positives = 241/449 (53%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +   +   PR A    F    G +
Sbjct: 1   MSSSTSTIVAIASAAGTGGVGIVRLSGPQSRQIAVQLGVARLQ-PRHAHYARFRDAQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++AD+I++      R +   + G  S         LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADVIAAGDLRAARAARRALDGVFSRRVDAVAHTLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  +      +V + +   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 EP-LDTLGGNQVRDGLTQARTLLAQLLRDAERGRTLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297

Query: 301 LILLLKEINSKK--EISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +    +    ID +    +I  K DL S     +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDPQAARAAIGDAIDAVPRQLWIHNKCDLLSDAAPLDVNAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++ + L +  + +     +  RH+  L +  R+++ A L      L++ AE LRL
Sbjct: 358 QLHIRLRELALGDGVESVDGEFSARTRHVEALRRAERHVDAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKISADDLLGKIFSSFCIGK 446


>gi|75908210|ref|YP_322506.1| tRNA modification GTPase TrmE [Anabaena variabilis ATCC 29413]
 gi|123758831|sp|Q3MBM5|MNME_ANAVT RecName: Full=tRNA modification GTPase mnmE
 gi|75701935|gb|ABA21611.1| tRNA modification GTPase trmE [Anabaena variabilis ATCC 29413]
          Length = 463

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 245/460 (53%), Gaps = 32/460 (6%)

Query: 7   TIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----D 57
           TI A++T  +P   ++ I+R+SG     + +  F    K+ +    S R  +G       
Sbjct: 10  TIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFHAPGKQVWE---SHRILYGYIRHPQT 66

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +I+D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ RA
Sbjct: 67  RQIVDEALLLLMKAPRSYTREDVVEFHCHGGIMAVQQVLQ-LCLEGGARLAQPGEFTLRA 125

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AES+ADL+ + +    + ++ G+ G+L+    Q       I + IEA +D
Sbjct: 126 FLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARID 185

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F  EED+     +++++DI  +  +IS  ++    GE++R G K+ I+G  N GKSSL N
Sbjct: 186 F--EEDLPPLDDEKIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLN 243

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           A ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIRET D VEK G++R+     
Sbjct: 244 AWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 303

Query: 298 NADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSDLYST-------YTEEYDHLIS 344
            ADL+LL  +         +EI    K+   I +  K DL          Y +    ++ 
Sbjct: 304 TADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVDKKLITSLEYPKNITQIVH 363

Query: 345 SFTG--EGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           +     +G++ L   I  I+ + K K     +  ++R    L+Q    LE       +  
Sbjct: 364 TAAAQKQGIDALETAILEIVQTGKVKAADMDLAINQRQAAALTQAKISLEQVQATITQQL 423

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 424 PLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 463


>gi|225181151|ref|ZP_03734597.1| tRNA modification GTPase TrmE [Dethiobacter alkaliphilus AHT 1]
 gi|225168120|gb|EEG76925.1| tRNA modification GTPase TrmE [Dethiobacter alkaliphilus AHT 1]
          Length = 460

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 159/461 (34%), Positives = 244/461 (52%), Gaps = 25/461 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DG 58
           HE +TI A++T      I I+R+SGP    + + + +  +P     S + ++G      G
Sbjct: 2   HE-DTIAAIATPVGEGGIGIVRISGPQAKDIGKELFRFHRPVQNPQSHKLYYGHVIGEGG 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            +LD+ LL    SP ++T ED  E + HGGI  +   LE   ++   RLA  GEF++RAF
Sbjct: 61  EVLDEALLAFMHSPRTYTTEDVVEINCHGGIMPLKKTLERTLQL-GARLAEAGEFTQRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++  +I + TE   +LS+  + G LS   G+   +L  + + +EA +DF
Sbjct: 120 LNGRIDLAQAEAVIQIIRARTETAMQLSVAQLQGRLSQKVGEIRQQLLSVLAHMEASIDF 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV++ +  ++         +I   +     G I+R G +  I+G  N GKSSL NA
Sbjct: 180 PEHQDVEDVAFVQLREAAELAHKEIDLLLQTADKGRILREGLRTAIVGRPNVGKSSLLNA 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L K+  AIVTDIPGTTRDVL   ++L G  + + DTAGIRET D VEK G++R+   +  
Sbjct: 240 LLKEQRAIVTDIPGTTRDVLEESVNLGGIALTMVDTAGIRETTDTVEKMGVERSREALGQ 299

Query: 299 ADLILLLKEIN---SKKEISFPKNID---FIFIGTKSDLYSTYTEEYDHLISSFT----- 347
           ADL+L + + +   + ++I   +       I I  K+DL S+  +    L S        
Sbjct: 300 ADLVLYVLDASDDLTAEDIELLQAAGEKPLIVIVNKTDLVSSPADVTTKLHSELASVPVV 359

Query: 348 ------GEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKD 399
                   GL+EL   I S +     K    ++ +  RH   LS+++ +L+ M S  E  
Sbjct: 360 PMSVVENRGLQELEEAIVSLVFQGDVKPSQSAMVTSARHKDALSRSLTFLQDMLSALESG 419

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++A +L  A  +LG+ITG      L D IFS FCIGK
Sbjct: 420 FAIDLLAIDLHSALDALGEITGETVGADLADEIFSAFCIGK 460


>gi|325915706|ref|ZP_08178011.1| tRNA modification GTPase trmE [Xanthomonas vesicatoria ATCC 35937]
 gi|325538123|gb|EGD09814.1| tRNA modification GTPase trmE [Xanthomonas vesicatoria ATCC 35937]
          Length = 428

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 148/435 (34%), Positives = 235/435 (54%), Gaps = 21/435 (4%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
           + I+RLSGP   Q+   +     P  PR A    F    G+++D G+ + F +P SFTGE
Sbjct: 1   MGIVRLSGPQAVQIAAQL--GIAPLQPRHAHYARFRDAQGQVIDDGIALWFNAPRSFTGE 58

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HG   V+  ++     +   R A  GEFS RAF NGK+DL +AE++ADLI++ 
Sbjct: 59  DVVELQGHGSPVVLRQLVACCIAL-GARQARAGEFSERAFLNGKLDLTQAEAIADLIAAG 117

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
                  +   + G  S       D LT +R  +EA +DF++E  +      +V   +  
Sbjct: 118 DVRAAGAARRSLDGVFSRRIDAVSDSLTRLRVHVEAAIDFADEP-LDTLGGTQVREGLQQ 176

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
            +  ++  +   + G  +R+G   V++G  NAGKSSL NALA  D AIVTD+ GTTRD L
Sbjct: 177 ARALLAQLLRDAERGRKLRDGMHAVLIGPPNAGKSSLLNALAGSDRAIVTDVAGTTRDTL 236

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKEI- 314
              + L+G+ + + DTAG+R+  D +E+EG++R   E++ ADL L++   ++  + +E  
Sbjct: 237 HEAILLDGFELTLVDTAGLRDGGDAIEREGMRRARAELQRADLALVVLDARDPQAAREAI 296

Query: 315 -----SFPKNIDFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSI-LSNK 365
                + P+    ++I  K DL    T   D     +S+ TG+GLE+L  +++ + LS+ 
Sbjct: 297 GDAIDAVPRQ---LWIHNKCDLLDNNTPLLDANAVAVSATTGQGLEQLHTRLRELALSDG 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425
            + +     +  RH+  L +  ++ + A L      L++ AE LRLA  +LG+ITG +  
Sbjct: 354 IESVDGEFSARTRHVDALRRAEQHADAAELELGFEQLELAAEELRLAHAALGEITGKLSA 413

Query: 426 EQLLDIIFSKFCIGK 440
           ++LL  IFS FCIGK
Sbjct: 414 DELLGKIFSSFCIGK 428


>gi|90194098|gb|ABD92610.1| ThdF [Actinobacillus suis ATCC 33415]
          Length = 436

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 154/438 (35%), Positives = 241/438 (55%), Gaps = 29/438 (6%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTG
Sbjct: 6   GGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTG 64

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++ADLI +
Sbjct: 65  EDVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LN
Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI+   N +     QG    I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTT
Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTT 240

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL+ +   +   
Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAE 300

Query: 315 SF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINK 357
           +F           P+NI    I  K DL       +E D      +S+ T  G++ L   
Sbjct: 301 AFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLREH 360

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVS 415
           +K  +  +         + +RHL  L     +LE     L +   G +++AE LR+   +
Sbjct: 361 LKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNA 418

Query: 416 LGKITGCVDVEQLLDIIF 433
           L +ITG    + LL  IF
Sbjct: 419 LSEITGQFTSDDLLGNIF 436


>gi|154249072|ref|YP_001409897.1| tRNA modification GTPase TrmE [Fervidobacterium nodosum Rt17-B1]
 gi|205829140|sp|A7HK07|MNME_FERNB RecName: Full=tRNA modification GTPase mnmE
 gi|154153008|gb|ABS60240.1| tRNA modification GTPase TrmE [Fervidobacterium nodosum Rt17-B1]
          Length = 459

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 170/457 (37%), Positives = 260/457 (56%), Gaps = 23/457 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----PRKASLRYFFGL 56
           N  ++TI A+ST     AI+IIR+SG    ++ E   K KK        R+ +  YF+  
Sbjct: 8   NLNRDTIVALSTPPGIGAIAIIRISGNKSLELTEKTIKNKKINIKTLEERRINHGYFYDE 67

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +G I+D+ + + F SP S+TGED  E + HGGI V N I++ L K+   RLA  GEF+RR
Sbjct: 68  NGEIIDEIMFVYFKSPRSYTGEDMVEIYCHGGILVTNKIIDTLLKL-GARLAENGEFTRR 126

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGKIDL++AES+  +I +++E   +L+++ + G+LS+        L ++ S IE  +
Sbjct: 127 AFLNGKIDLIKAESILQIIEAKSEKSLKLALDNLKGKLSNEIEYLRSSLINVLSKIEVSI 186

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ ++ DV     +E+LND++ +++ +   I     G  I  G  + I+G  N GKS+L 
Sbjct: 187 DYGDDIDV---PKEEILNDLINVQSFLKEKIKHADKGLHISTGVTMAIVGKPNVGKSTLL 243

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTDIPGTTRDV+  +L ++G    ISDTAGIR T+D VEK GI++   E 
Sbjct: 244 NRLLVEDRAIVTDIPGTTRDVIKGELKIKGVHFIISDTAGIRMTEDKVEKIGIEKALNEA 303

Query: 297 ENADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEYDHL-----ISS 345
           + +D+IL L +      N  + I +  K+ +FI +  K D+     ++   L     IS+
Sbjct: 304 KKSDVILFLLDATTGFTNEDEYIYNLIKDCNFIPVWNKIDIAEKVDKDIVFLRNSVVISA 363

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EKDCGLD 403
            TG G+ EL  KI   +    +    S  + KR L +L + V Y  + ++N  +K+  LD
Sbjct: 364 ETGRGMRELEEKILESVKVLVEDGELSHVTSKRQLEYLKR-VEYNIIKAINSLKKNMPLD 422

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           II+ ++R     L ++ G    E LLD IFS FC+GK
Sbjct: 423 IISIDIRNGLEQLDELMGRNFTEDLLDNIFSNFCVGK 459


>gi|332184417|gb|AEE26671.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella cf.
           novicida 3523]
          Length = 450

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 156/467 (33%), Positives = 250/467 (53%), Gaps = 47/467 (10%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + K+TI A++T      I I+R+SG     + E + K+    PR A     +  D  I+D
Sbjct: 2   YTKDTIVAIATPQGNGGIGIVRISGIDALVIAEKLTKRHLK-PRYAIFSNIYN-DSEIID 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GEF+ RAF N K
Sbjct: 60  HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++EA +DF EEE
Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178

Query: 183 DVQNF--------SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
              NF        S +E+   IL +KN         K G I+  G  ++++G  NAGKSS
Sbjct: 179 --INFLEDQKIHTSLEEIYKTILDVKNSC-------KQGVILAEGITLILVGKPNAGKSS 229

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR   
Sbjct: 230 LLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIK 289

Query: 295 EVENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEYD 340
           +++ AD +L + +  +  ++ F              PKNID  ++  K DL     + +D
Sbjct: 290 KIQEADQVLFVTDDYTNSQVKFSDIKDIIPEFYDQIPKNIDITYVHNKIDLLKEVPQNHD 349

Query: 341 H--LISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA 393
           +   IS+    G+    E ++NK+     N+      SI  + +RH+  ++    ++++A
Sbjct: 350 NHIYISAENNIGIDRLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLA 403

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 404 KQQLELGNGELLAEELLIVQECLNSITGEFSSDDLLGKIFSSFCIGK 450


>gi|289436062|ref|YP_003465934.1| tRNA modification GTPase TrmE [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289172306|emb|CBH28852.1| tRNA modification GTPase TrmE [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 457

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 155/464 (33%), Positives = 252/464 (54%), Gaps = 35/464 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K      AS    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAASHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPKTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   +++AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALKDAD 300

Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTY-TEEYDHL--------I 343
            ILL+  +N  +E++             +++ +  K+DL      E    L         
Sbjct: 301 FILLV--LNQNEELTIEDEALFEAASGHNYVVVLNKTDLEQRLDIERVRELAGANPVVET 358

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           S    EGLE L + IK++  +        +  S+ RH+  L Q      + SLN    G+
Sbjct: 359 SLIKDEGLEALEDAIKTLFFAGDIDAGDATYVSNVRHIALLHQA-----LESLNAVTTGI 413

Query: 403 ------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 414 QLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|313635544|gb|EFS01763.1| tRNA modification GTPase TrmE [Listeria seeligeri FSL N1-067]
          Length = 457

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 155/464 (33%), Positives = 252/464 (54%), Gaps = 35/464 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K      AS    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAASHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPKTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   +++AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALKDAD 300

Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTY-TEEYDHL--------I 343
            ILL+  +N  +E++             +++ +  K+DL      E    L         
Sbjct: 301 FILLV--LNQNEELTIEDEALFEAASGHNYVVVLNKTDLEQKLDIERVRELAGANPVVET 358

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           S    EGLE L + IK++  +        +  S+ RH+  L Q      + SLN    G+
Sbjct: 359 SLIKDEGLEALEDAIKTLFFAGDIDAGDATYVSNVRHIALLHQA-----LESLNAVTTGI 413

Query: 403 ------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 414 QLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|168183721|ref|ZP_02618385.1| tRNA modification GTPase TrmE [Clostridium botulinum Bf]
 gi|237797100|ref|YP_002864652.1| tRNA modification GTPase TrmE [Clostridium botulinum Ba4 str. 657]
 gi|182673145|gb|EDT85106.1| tRNA modification GTPase TrmE [Clostridium botulinum Bf]
 gi|229263227|gb|ACQ54260.1| tRNA modification GTPase TrmE [Clostridium botulinum Ba4 str. 657]
          Length = 461

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 165/469 (35%), Positives = 265/469 (56%), Gaps = 42/469 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFFG 55
           E +TI AV+T      ISIIR+SG     +   I K K        KP+    S+RY F 
Sbjct: 3   EFDTIAAVATPVGEGGISIIRISGDKSLDIVSSIFKGKNDRSLDDIKPY----SMRYGFI 58

Query: 56  LDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
           ++     ++D+ L+     P SFT ED+ E + HGG+     IL+EL K    RLA PGE
Sbjct: 59  IEKESKEMIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIK-SGARLAEPGE 117

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NG+IDL +AE++ D+I S+T++  + +++   G LS       +++  I + I
Sbjct: 118 FTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKIIAHI 177

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +D+ E+ D++  + +++  D+  + N I + IS  + G+I+R G   VI+G  N GK
Sbjct: 178 EATVDYPED-DLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVGK 236

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NAL  ++ AIVT+IPGTTRDV+   ++++G  +KI DTAGIRET+D+VEK G++++
Sbjct: 237 SSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVEKS 296

Query: 293 FLEVENADLILLL----KEINSK--KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
             +++ ADL++ +    +EI+ +  + + F KN  +I +  K DL     EE +H I   
Sbjct: 297 KEKIDEADLVIFMLDLSREIDEEDIEIMDFIKNKKYIVLLNKLDLNKDLNEE-NHFIKEL 355

Query: 347 -----------TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT----VRYLE 391
                         GL EL   IK++  +   K    I ++ RH   L ++    ++ +E
Sbjct: 356 DSKYIIKTSVKNNSGLNELKECIKNLFFSGEIKSDELIVTNARHQEALIRSRESCIQAIE 415

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             S    +  +D+ + ++R A   LG+ITG    E ++D IFS+FC+GK
Sbjct: 416 TLS---DEISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461


>gi|281412323|ref|YP_003346402.1| tRNA modification GTPase TrmE [Thermotoga naphthophila RKU-10]
 gi|281373426|gb|ADA66988.1| tRNA modification GTPase TrmE [Thermotoga naphthophila RKU-10]
          Length = 450

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 162/455 (35%), Positives = 255/455 (56%), Gaps = 26/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI AV+T     AI+I+RLSGP  ++V +  +  + K  PR+A +  +   +G  +D+ 
Sbjct: 2   DTIVAVATPHGKGAIAILRLSGPDSWKVVQKHLRTRSKIIPRRA-IHGWIHENGEDVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I + SP+S+TGED  E   HGG  VV  +L+ L      R+A PGEF++RAF NGK+D
Sbjct: 61  VVIFYKSPKSYTGEDMVEVMCHGGPLVVKKMLD-LFLRSGTRMAEPGEFTKRAFLNGKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE++ DLI +++E   +LS+  + G L          L  I + I  +LD+ +E + 
Sbjct: 120 LTSAEAVRDLIEAKSETGLKLSLRNLKGGLRGFIENLRRDLIEILAEIRVELDYPDEIET 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                  V+  +  +K +++  + +   G ++  G ++VI+G  N GKS+L N L  +D 
Sbjct: 180 DTGG---VVTKLEQIKEELTEELRKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDR 236

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIVTDIPGTTRDV++ ++ ++G L +I DTAG+R ET+D+VE+ GI+RT  EVE AD++L
Sbjct: 237 AIVTDIPGTTRDVISEEIVIKGILFRIVDTAGVRSETNDLVERLGIERTLQEVEKADIVL 296

Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEY--------DHL--ISSFT 347
            + + +S      +K +   KN  ++ +  K D+     EE          H+  IS+  
Sbjct: 297 FVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALK 356

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           GEGLE+L   I       F++   S+ ++ R    L     +LE A  SL E    +D+ 
Sbjct: 357 GEGLEKLEEAIYRETQEIFERGSDSLITNLRQKQLLENVKAHLEDAIRSLKE-GMPVDMA 415

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +L  A   L ++TG    E LLD IFS FC+GK
Sbjct: 416 SIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 450


>gi|90194104|gb|ABD92613.1| ThdF [Actinobacillus equuli subsp. equuli]
          Length = 436

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 154/438 (35%), Positives = 241/438 (55%), Gaps = 29/438 (6%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTG
Sbjct: 6   GGVGILRISGPLAQEVAKEVLGKELN-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTG 64

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++ADLI +
Sbjct: 65  EDVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LN
Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI+   N +     QG    I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTT
Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTT 240

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL+ +   +   
Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAE 300

Query: 315 SF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINK 357
           +F           P+NI    I  K DL       +E D      +S+ T  G++ L   
Sbjct: 301 AFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLREH 360

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVS 415
           +K  +  +         + +RHL  L     +LE     L +   G +++AE LR+   +
Sbjct: 361 LKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNA 418

Query: 416 LGKITGCVDVEQLLDIIF 433
           L +ITG    + LL  IF
Sbjct: 419 LSEITGQFTSDDLLGNIF 436


>gi|160914941|ref|ZP_02077155.1| hypothetical protein EUBDOL_00949 [Eubacterium dolichum DSM 3991]
 gi|158433481|gb|EDP11770.1| hypothetical protein EUBDOL_00949 [Eubacterium dolichum DSM 3991]
          Length = 442

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 149/448 (33%), Positives = 262/448 (58%), Gaps = 20/448 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRIL 61
           ++TI A+ST A+  AISIIR+SG     + + +           ++ Y F +D      +
Sbjct: 3   QDTIAAISTAAVDGAISIIRMSGNDAIDIADRLTSIDLTKKASHTISYGFIIDPITKEEV 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ VF +P++FT ED  E + HGG  +   IL+ L      RLA  GEF+RRAF +G
Sbjct: 63  DEVLISVFHAPKTFTCEDIVEINCHGGRFITKKILQ-LCLAQGARLAEAGEFTRRAFLHG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I ++T +  RL+M G+ G + +L    I  +  + + IE ++D+ E 
Sbjct: 122 RIDLTQAEAINDMIMADTNVNARLAMHGIKGSVKALLDPLISTMLDMIANIEVNIDYPEY 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +DV+  +++++L         I   + +   G++++ G K  I+G  N GKSSL NAL +
Sbjct: 182 DDVEQLTNEKLLPKAQVWLKKIDEILDKANSGQMLKEGIKTAIIGKPNVGKSSLLNALLE 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVTDI GTTRD++   + L G  + + DTAGIRET+D+VE+ GI+R+   +E A L
Sbjct: 242 EDKAIVTDIAGTTRDIVEGRIHLSGLTLHLIDTAGIRETEDVVEQIGIQRSIKAIEEAQL 301

Query: 302 ILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEEL 354
           ++++    +EI+++ E  ++  K+   I +  KSDL     ++++ + IS+  GE ++ L
Sbjct: 302 VIVVLDGSREIDAEDEKLLALAKDKTHIVVYNKSDL-----KQHEGICISAAKGE-IQPL 355

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLA 412
           ++KI  +  +    +   + +++R +  + +  + +  A  ++N +   LD++A +++ A
Sbjct: 356 LDKIHELYDHHQLVVEEPLLTNERQISQMLKAKQSMLQAIQAMNMQ-MTLDLVAIDIQDA 414

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +L +I G V  E LLD +FS FC+GK
Sbjct: 415 YTALKEILGEVHHEDLLDTLFSNFCLGK 442


>gi|22298504|ref|NP_681751.1| tRNA modification GTPase TrmE [Thermosynechococcus elongatus BP-1]
 gi|223635295|sp|P0C8N9|MNME_SYNEL RecName: Full=tRNA modification GTPase mnmE
 gi|223635296|sp|P0C8P1|MNME_THEEB RecName: Full=tRNA modification GTPase mnmE
 gi|5420315|emb|CAB46651.1| possible thiophene and furan oxidation protein [Synechococcus
           elongatus]
 gi|22294684|dbj|BAC08513.1| thiophen and furan oxidation protein [Thermosynechococcus elongatus
           BP-1]
          Length = 469

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 155/479 (32%), Positives = 265/479 (55%), Gaps = 49/479 (10%)

Query: 1   MNHEKETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL 56
           M H  +TI A++T  +P   +I I+RLSG     + +  F    K+P+    S R  +G 
Sbjct: 1   MRHFHDTIAAIATAIVPQQGSIGIVRLSGAKAVAIAQSLFEAPGKQPW---ESHRILYGY 57

Query: 57  --DGRI---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
             D +    +D+ LL++  +P S+T ED  EFH HGG+  V  +L+ L      RLA+PG
Sbjct: 58  VRDPQTKERVDEALLLLMLAPRSYTREDVVEFHCHGGLIPVQRVLQ-LCVAAGARLADPG 116

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+ RAF NG++DL +AES+A+L+++++    ++++ G++G+L+    Q       + + 
Sbjct: 117 EFTLRAFLNGRLDLTQAESVAELVAAQSTTAAQIALAGLTGKLARPLQQIRQTCLSLLAE 176

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           IEA LDF++E  +       +   I  L++ + + ++  + G +IR G K+ I+G  N G
Sbjct: 177 IEARLDFTDE--LPPLDPAAIAEQIRQLQHQVEAFLATAERGALIRTGLKVAIVGRPNVG 234

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NA ++ D AIVTD+PGTTRD++   L + G  +++ DTAGIRETD++VE+ G++R
Sbjct: 235 KSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVGGIPIQVLDTAGIRETDNLVEQIGVQR 294

Query: 292 TFLEVENADLILLLKEINSKKEIS----------------FPKNIDFIFIGTKSDLYSTY 335
           +     +ADLILL+ + +     +                 P+++  + +  K+DL S  
Sbjct: 295 SRQAALSADLILLVIDASQGWTAADQAIYDQLQLKQRRQQAPQSV--LVVLNKADLLSET 352

Query: 336 TEEYD----------HLISSFTGEGLEELINKIKSILSNK---FKKLPFSIPSHKRHLY- 381
           TE  D           L+S+ +  G+E+L + I  ++  +      L F+I   +  L  
Sbjct: 353 TEVKDIPLPIAPIPTVLLSALSQRGIEQLEDAILHLVQGQGVSAANLDFAINQRQAGLLE 412

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + Q++ ++ +A+++ +   LD    +L  A+ +LG +TG    E +L  IFS+FCIGK
Sbjct: 413 QVHQSLNHV-LAAIDAQ-LPLDFWTIDLHAAARALGTLTGEEVTESVLTEIFSRFCIGK 469


>gi|150008732|ref|YP_001303475.1| tRNA modification GTPase TrmE [Parabacteroides distasonis ATCC
           8503]
 gi|205415787|sp|A6LDT9|MNME_PARD8 RecName: Full=tRNA modification GTPase mnmE
 gi|149937156|gb|ABR43853.1| putative GTPase, ThdF family [Parabacteroides distasonis ATCC 8503]
          Length = 461

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 157/464 (33%), Positives = 251/464 (54%), Gaps = 35/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRY--FFGLDGR 59
           TI A+ST      I++IR+SGP  F++C+ I + KK        +  +L Y    G +  
Sbjct: 3   TICAISTAPGVGGIAVIRVSGPDTFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  VF +P SFTGED+ E   HG   +   IL+ L      R+A PGE+++RAF 
Sbjct: 63  TIDEVIAAVFRAPHSFTGEDTVEITCHGSTYIQQQILQSLIS-SGCRIAQPGEYTQRAFM 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S +  Q RL++  M G  S    +  ++L H  S +E +LDFS
Sbjct: 122 NGKMDLSQAEAVADLIASTSAGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           + E+++ F+ +  L  +      + S ++Q   +G  I+NG  + I+G +NAGKS+L NA
Sbjct: 182 DHEELE-FADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRDV+   +++ G L +  DTAGIRET D +E  GI+R+F  ++ 
Sbjct: 241 LLNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETSDAIEALGIERSFKALDQ 300

Query: 299 ADLILLLKEINSK--------KEISFPK--NIDFIFIGTKSDL--------YSTYTEEYD 340
           A +++L+ ++           +EI+ P+  N   I    K D+        +S  TE + 
Sbjct: 301 AQIVILMYDLTRDLKDFEAFYQEIA-PRLTNKSVILAMNKCDVLPTSSLPTFSFPTEGWH 359

Query: 341 HLISSFTGE----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
            +  S   +     L++L+ ++ SI +     +  +   H   L H  + +  ++   LN
Sbjct: 360 QIAISAKSKLHIAELQQLLTEVSSIPTLHQSDIIVTNVRHFEALTHALEAIHRVQ-EGLN 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G D I+++LR     L  I G V  +Q+L  IF  FCIGK
Sbjct: 419 SSLSG-DFISQDLRECIFHLSDIVGEVTTDQVLGNIFRHFCIGK 461


>gi|153937917|ref|YP_001392999.1| tRNA modification GTPase TrmE [Clostridium botulinum F str.
           Langeland]
 gi|166200475|sp|A7GJN9|MNME_CLOBL RecName: Full=tRNA modification GTPase mnmE
 gi|152933813|gb|ABS39311.1| tRNA modification GTPase TrmE [Clostridium botulinum F str.
           Langeland]
          Length = 461

 Score =  232 bits (591), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 163/469 (34%), Positives = 263/469 (56%), Gaps = 42/469 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFFG 55
           E +TI AV+T      ISIIR+SG     +   I K K        KP+    S+RY F 
Sbjct: 3   EFDTIAAVATPVGEGGISIIRISGDKSLDIVSSIFKGKNDRTLDDIKPY----SMRYGFI 58

Query: 56  LDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
           ++     ++D+ L+     P SFT ED+ E + HGG+     IL+EL K    RLA PGE
Sbjct: 59  IEKESKEMIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIK-SGARLAEPGE 117

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NG+IDL +AE++ D+I S+T++  + +++   G LS       +++  I + I
Sbjct: 118 FTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKIIAHI 177

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +D+ E+ D++  + +++  D+  + N I + IS  + G+I+R G   VI+G  N GK
Sbjct: 178 EATVDYPED-DLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVGK 236

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NAL  ++ AIVT+IPGTTRDV+   ++++G   KI DTAGIRET+D+VEK G++++
Sbjct: 237 SSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPTKIVDTAGIRETEDVVEKIGVEKS 296

Query: 293 FLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
             +++ ADL++ + +++ K +      + F KN  +I +  K DL     EE +H I   
Sbjct: 297 KEKIDEADLVIFMLDLSKKIDEEDIEIMDFIKNKKYIVLLNKLDLNKDLNEE-NHFIKEL 355

Query: 347 -----------TGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQT-VRYLE 391
                         GL EL   IK++  +   K  +L  +   H+  L    ++ ++ +E
Sbjct: 356 DSKYIIKTSVKNNSGLNELKECIKNLFFSGEIKSDELTVTNARHQEALIRSRESCIQAIE 415

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             S    +  +D+ + ++R A   LG+ITG    E ++D IFS+FC+GK
Sbjct: 416 TLS---DEISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461


>gi|241668179|ref|ZP_04755757.1| tRNA modification GTPase TrmE [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876714|ref|ZP_05249424.1| tRNA modification GTPase trmE [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842735|gb|EET21149.1| tRNA modification GTPase trmE [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 450

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 147/454 (32%), Positives = 247/454 (54%), Gaps = 21/454 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + K+TI AV+T      I I+R+SG     + E + KK+   PR A+    +  +  I+D
Sbjct: 2   YTKDTIVAVATPQGNGGIGIVRISGSDALSIAEKLTKKR-LIPRYATFCNIYNTN-EIID 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++I F SP S+TGED  E   HG   ++N I++   +    R+AN GEF+ RAF N K
Sbjct: 60  HGIVIFFNSPNSYTGEDVVEIQAHGNPFILNLIIKATLEY-GARMANAGEFTERAFLNSK 118

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++AD+I++ +E   + + + + G+ S      ++KL ++R ++EA +DF EEE
Sbjct: 119 LDLTQAEAVADIINASSETAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +     +++ N +  +   I    +  K G I+  G  ++++G  NAGKSSL NALA K
Sbjct: 179 -INFLEDQKIHNSLQDIYKTILDVKNSCKQGAILVEGITLILVGKPNAGKSSLLNALAGK 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR   +++ AD I
Sbjct: 238 ESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRSSDDIIESEGIKRAIKKIQEADQI 297

Query: 303 LLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEYDH--LISSF 346
           L + +  +  ++ F              PK+ID  ++  K DL       +++   IS+ 
Sbjct: 298 LFVTDDYTNSQVKFSDIKDIIPEFYHQIPKDIDITYVHNKIDLLKEVPLNHNNHIYISAE 357

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
           +  G+++L + I + +    +       + +RH+  +     ++++A    +    +++A
Sbjct: 358 SNIGIDKLKDHILAKVGYTTQNESI-YTARERHVTAIDNAFDHIKLAKEQLELGNGELLA 416

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E L +    L  ITG    + LL  IFS FCIGK
Sbjct: 417 EELLIVQEHLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|90194134|gb|ABD92628.1| ThdF [Mannheimia granulomatis]
          Length = 436

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 152/437 (34%), Positives = 244/437 (55%), Gaps = 29/437 (6%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SGP    V E +  KK   PR A+   F   DG +LD+G+ + F +P SFTGE
Sbjct: 7   GVGILRVSGPLAETVAEAVLGKKLQ-PRLANYLPFKDEDGTVLDQGIALFFKAPNSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +++ + ++  +R+A  GEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQVILDLLIKRILQVNGIRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LN+
Sbjct: 126 SEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIESKLNE 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+   N +     + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTTR
Sbjct: 185 II---NQLDGVRREAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           DVL   + ++G  + I DTAG+R+T D VE+ GIKR + E+  AD +LL+ +   ++   
Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLRDTGDEVERIGIKRAWDEIAQADHVLLMIDSTEQQADQ 301

Query: 316 F-----------PKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTGEGLEELINKI 358
           F           PKNI    I  K DL          +++  + +S+ T  G++ L + +
Sbjct: 302 FRSEWADFLEKLPKNIPVTVIRNKVDLSGESEGLIQVDDFTMIRLSAQTKVGIDLLRDHL 361

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416
           K  +  +         + +RHL  L     +LE     L +   G +++AE LR+   +L
Sbjct: 362 KKSMGYQ-SSTEGGFLARRRHLQALETAATHLERGHVQLTQFFAG-ELLAEELRMVQNAL 419

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 420 SEITGQFTSDDLLGNIF 436


>gi|110802832|ref|YP_699904.1| tRNA modification GTPase TrmE [Clostridium perfringens SM101]
 gi|123047103|sp|Q0SPQ3|MNME_CLOPS RecName: Full=tRNA modification GTPase mnmE
 gi|110683333|gb|ABG86703.1| tRNA modification GTPase TrmE [Clostridium perfringens SM101]
          Length = 458

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 160/463 (34%), Positives = 266/463 (57%), Gaps = 33/463 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--------KKKPFPRKASLRYFFG 55
           E +TI A++T      I+IIR+SG    ++   I +          KP+    ++RY   
Sbjct: 3   EFDTIAAIATALGEGGIAIIRVSGNKALEIVNKIFRGINGKDLLDIKPY----TMRYGHM 58

Query: 56  LD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           +D    I+D+ ++     P SFT ED+ E + HGGI   N +L+ + K    RLA PGEF
Sbjct: 59  IDENNEIIDEVIVSFMKGPRSFTAEDTVEINCHGGIVATNKVLQNVIK-AGARLAEPGEF 117

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG+IDL +AE++ D+I+++TE+  + +M    G LS+       +   I + IE
Sbjct: 118 TKRAFLNGRIDLSQAEAVMDIITAKTELSMKSAMTQSQGRLSTEINNLRKEALDILALIE 177

Query: 174 ADLDFSEE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
             +DF+E+ E+       +V  D++ L+  +++ I     G++IR+G  +VI+G  N GK
Sbjct: 178 YAVDFTEDDEEPDETIPVKVKEDVITLRGKVNNLIDTADEGKLIRDGLSMVIVGKPNVGK 237

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NAL  ++ AIVTDI GTTRDV+   ++L+G  V++ DTAGIRET+D+VEK G++++
Sbjct: 238 SSLLNALLNENRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAGIRETEDVVEKIGVEKS 297

Query: 293 FLEVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHL--- 342
             ++  ADL++L+    +E++   K+ I + K+  +I +  K DL    + E  D+L   
Sbjct: 298 KEKINEADLVILMLDTSRELDEEDKEIIDYIKDRKYIVLLNKVDLDRKLSSEIVDNLENK 357

Query: 343 --ISSFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
             +S+ TG G+++L +KIK +  N     + +  +   HK  LY  S+ +    +  LN 
Sbjct: 358 IELSAKTGFGIDDLKSKIKDLFFNGSIDAESVMVTNTRHKEALYRASENLDG-ALNGLNN 416

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  LD+++  +  A  +LG+ITG    E L++ IF++FC GK
Sbjct: 417 NEF-LDLVSIYVTSALRALGEITGAELEEDLVNKIFAEFCCGK 458


>gi|126695547|ref|YP_001090433.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9301]
 gi|166234804|sp|A3PAQ7|MNME_PROM0 RecName: Full=tRNA modification GTPase mnmE
 gi|126542590|gb|ABO16832.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus str. MIT 9301]
          Length = 460

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 165/442 (37%), Positives = 240/442 (54%), Gaps = 25/442 (5%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPSPE 73
            ++IIR+SG      C+ I + K  +  + S R F G        + +D+ L++V  SP 
Sbjct: 24  GVAIIRVSGKDAINSCKKIVQTKSKYAWE-SHRVFRGFIQENKQNKFIDEVLILVMKSPN 82

Query: 74  SFTGEDSAEFHVHGGIAVVNGILE-ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
           SFTGED  E H HGGI +VN +L+  L+    +R+ANPGEFS+RAF NGKIDL +AES+ 
Sbjct: 83  SFTGEDVVELHCHGGIIIVNKVLKILLSSNSRVRIANPGEFSQRAFLNGKIDLTQAESIN 142

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
            LI++       L+  G+ GE+        + L +    IEA +DF  EED  +F   + 
Sbjct: 143 QLINASNTRSAELAFSGIQGEIKKKIDDIKNDLINQLCEIEARVDF--EEDFTDFDYTKY 200

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           L +I  +K  I   I   K    I NG  I ++G +N GKSSL N LAKK+ AIVT+IPG
Sbjct: 201 LKNIKKVKEKIELLIENAKRNSYIHNGISIALIGKTNVGKSSLLNLLAKKEKAIVTNIPG 260

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI---- 308
           TTRDV+ ++L +    +KI DTAGIRET + +E  GIK++F +++ +D I+ +  +    
Sbjct: 261 TTRDVIEVNLTINDIPMKIIDTAGIRETYEQIESIGIKKSFGKIKESDFIIYIYSLEEGF 320

Query: 309 --NSKKEIS-FPKNIDFIFIGTKSDLYSTYTEEYDHLISSF-----TGEGLEELINKIKS 360
               KK I   PK      +G K DL        + L ++        +G + LI+ I  
Sbjct: 321 NEEDKKIIQEIPKEKLITILGNKKDLIDCKNINSNELKNTILMSIKNNDGEKLLIDTI-- 378

Query: 361 ILSNKFKKLP-FSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGK 418
           I     K++   +I  ++RH  +LS  +  L +   + E     D+++  LR    +L K
Sbjct: 379 IKKCGLKQVENINIFLNERHQTNLSACLSNLNDTDEIIENKLPFDLLSIELRDGIQNLSK 438

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           ITG    E+LLD IFSKFCIGK
Sbjct: 439 ITGQELTEELLDNIFSKFCIGK 460


>gi|312128799|ref|YP_003993673.1| tRNA modification gtpase trme [Caldicellulosiruptor hydrothermalis
           108]
 gi|311778818|gb|ADQ08304.1| tRNA modification GTPase TrmE [Caldicellulosiruptor hydrothermalis
           108]
          Length = 455

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 251/459 (54%), Gaps = 27/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFP-RKASLRYFFGLD 57
           E +TI A+ST      I I+R+SG S F + E + + +K       P R A+L   +  D
Sbjct: 2   EFDTIVAISTPIGTGGIGIVRISGKSAFDIAEKLIRSRKYKSIKDIPVRYAALVDVYDGD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +LI F SP S+TGED  E   HGG+ V+  ILE   K    R A PGEF++RA
Sbjct: 62  -EFVDEAILIKFKSPHSYTGEDIVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+S+T + ++ + + + G LS    +    L ++ + IEA +D
Sbjct: 120 FLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNLVASIEASID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE E V   S  E+L+ I      I   I   + G+ I++G   VI+G  N GKSSL N
Sbjct: 180 FSEHE-VDEVSHDEILSTIDGALAKIEKLIKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K++ AIVTDIPGTTRDV+   LD+EG  + ++DTAG+R+T+DIVEK G+K+T   +E
Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGLPIILADTAGVRKTEDIVEKIGVKKTLESIE 298

Query: 298 NADLILLLKE--------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
            ADL+L + E              I  K+ I     ID     ++ D+   + +E   + 
Sbjct: 299 RADLVLFMIESSGILQEDLEIFETIKDKRFIVLVNKIDKEVKVSQDDIKRIFGKE--GIF 356

Query: 344 SSFTGEGLEELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            S   +   EL+ K     +L    + L   + ++ RH   L +   +L  A  N     
Sbjct: 357 ISVEHDKNLELVEKAIANEVLDRGIESLDSVLITNIRHKELLLKAKEFLLSAKENMYSVP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LDI++ +++ A  SL +ITG    E ++D IFS FCIGK
Sbjct: 417 LDILSIDIKNALESLYQITGKNVTEDMVDRIFSMFCIGK 455


>gi|157364263|ref|YP_001471030.1| tRNA modification GTPase TrmE [Thermotoga lettingae TMO]
 gi|205829181|sp|A8F732|MNME_THELT RecName: Full=tRNA modification GTPase mnmE
 gi|157314867|gb|ABV33966.1| tRNA modification GTPase TrmE [Thermotoga lettingae TMO]
          Length = 450

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 158/452 (34%), Positives = 243/452 (53%), Gaps = 21/452 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A+ST     AIS+IR+SG   +Q+C+  + +K K  PRKA   Y    DG ILD+ 
Sbjct: 3   DTIVAISTPIGTGAISVIRMSGSKSWQICQNVLLRKTKIEPRKAFHNYVKDSDGTILDEV 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I + SP S+TGED  E   HGGIAV   IL+ L      R A PGEF+RRAF NGKID
Sbjct: 63  MVIFYKSPNSYTGEDMIEIMCHGGIAVTQSILDTLISH-GARPAEPGEFTRRAFLNGKID 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++  +I + +    +L    ++G LS +  +  + L    + IE + D+ +E   
Sbjct: 122 LTKAEAVKQIIEASSRKTVKLVAANLAGRLSEIVHKLRETLLGTLAKIEVEFDYPDEILT 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             +  ++ LND +    +I  + +Q +L  I+ +G K+VI+G  N GKS+L N L K++ 
Sbjct: 182 DPYLIEKELNDAILQIEEILKN-AQNRL--ILSSGIKVVIIGKPNVGKSTLLNTLVKEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRD++ + L + G    + DTAGIR + D VEK G++R     +  +LIL 
Sbjct: 239 AIVTDIPGTTRDLIEVPLMINGISFTLIDTAGIRHSHDEVEKIGVERAIKAADEGNLILF 298

Query: 305 LKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHL--ISSFTG 348
           + +       N KK +S  K   +I +  K D       E          H+  IS+   
Sbjct: 299 VLDATTPVDENDKKILSLIKEKKYIVVINKIDATDLIDREELKKILGTNTHVLTISALKK 358

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           EG++ L  +I   + +  ++    I + +++ Y  S      +     +K   LDI+A+ 
Sbjct: 359 EGIQRLEEEIIKSVKDLIQQTDGYITTQRQYEYLASCRKELSDSIEAFKKKLPLDIVAQK 418

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ A  S+ K+ G    + LLD IF  FC+GK
Sbjct: 419 VKEALGSIDKLLGTDYTDDLLDRIFKDFCVGK 450


>gi|27904530|ref|NP_777656.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|29839495|sp|P59569|MNME_BUCBP RecName: Full=tRNA modification GTPase mnmE
 gi|27903927|gb|AAO26761.1| putative tRNA modification GTPase trmE [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 459

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 167/470 (35%), Positives = 258/470 (54%), Gaps = 41/470 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI +  T    S++ IIR+SG   F+V   +  +     R A    F  L G+I
Sbjct: 1   MNVFNDTIVSRVTSEGKSSVGIIRISGKLAFEVSIKVLNRDYLPIRTACYLSFLDLSGKI 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+++ FP P SFTGED  E   HG   +++ ++  +  +P +RLANPGEFS RAF N
Sbjct: 61  IDQGIVLWFPGPSSFTGEDVLELQGHGNPIIIDLLITTILSIPGIRLANPGEFSERAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL +AES++DLI++ +E   R +M+ + G  S      I   T  R+ IEA ++FS+
Sbjct: 121 GKIDLAQAESISDLINATSEQAARSAMQSLQGLFSIYINNLIKDFTKFRAKIEAQINFSD 180

Query: 181 EE-DVQNFSSKEVLNDILFLKNDISSHISQGK-------LGEIIRNGYKIVILGHSNAGK 232
            E +  N          +F++++I+  IS+ K        G ++R G K+VI G  N+GK
Sbjct: 181 HEINADNLD--------VFIEHEINRIISRIKKIRNTAIQGSVLREGIKVVISGAPNSGK 232

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NAL+  + AIVT+ PGTTRDV+  ++ + G L  + DTAG+R T++ +E  GI+R 
Sbjct: 233 SSLLNALSLTNRAIVTNFPGTTRDVIYENIIINGVLFILIDTAGLRITNNPIENIGIERA 292

Query: 293 FLEVENADLILL-----------LKEINS-KKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
           + E++ A+ IL            LK  N+  K +S    I  +F   KSDL S +    D
Sbjct: 293 WNEIKLAEHILFVIDGSRSVQNQLKNYNNFIKSLSKTSCITIVF--NKSDL-SKFKINSD 349

Query: 341 H-------LISSFTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTV-RYL 390
                   L+SS TG G+E L   +     + F+       + + +RH+  LS  + ++L
Sbjct: 350 LRNLNNGVLVSSKTGVGIEALRQHLYFSFKSSFEVNNSEGVVSARRRHINILSMVLEKFL 409

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 +K   ++++A++LR     LG ITG +  ++LL  IFS+FCIGK
Sbjct: 410 SSKKDWKKINNIELLADDLRTCQDLLGGITGKITSDELLSEIFSEFCIGK 459


>gi|90194090|gb|ABD92606.1| ThdF [Actinobacillus genomosp. 2]
 gi|90194096|gb|ABD92609.1| ThdF [Actinobacillus arthritidis]
          Length = 436

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 153/438 (34%), Positives = 241/438 (55%), Gaps = 29/438 (6%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SGP    V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTG
Sbjct: 6   GGVGILRISGPLAQTVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTG 64

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ + ++  +R+A  GEFS +AF N K+DL +AE++ADLI +
Sbjct: 65  EDVLELQGHGGQVILDILLKRILEIKGIRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LN
Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI+   N +     QG    I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTT
Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTT 240

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +LL+ +   +   
Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIQRAWDEIEQADHVLLMIDSTEQTAE 300

Query: 315 SF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINK 357
           +F           P+NI    I  K DL       +E D      +S+ T  G++ L   
Sbjct: 301 AFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLREH 360

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVS 415
           +K  +  +         + +RHL  L     +LE     L +   G +++AE LR+   +
Sbjct: 361 LKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNA 418

Query: 416 LGKITGCVDVEQLLDIIF 433
           L +ITG    + LL  IF
Sbjct: 419 LSEITGQFTSDDLLGNIF 436


>gi|312112752|ref|YP_003991068.1| tRNA modification GTPase TrmE [Geobacillus sp. Y4.1MC1]
 gi|311217853|gb|ADP76457.1| tRNA modification GTPase TrmE [Geobacillus sp. Y4.1MC1]
          Length = 461

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 155/464 (33%), Positives = 260/464 (56%), Gaps = 31/464 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLD- 57
           E +TI A+ST     AI+I+RLSG     + + +      K+ K  P   ++ Y   +D 
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDEAIAIADRVFKSPSGKRLKDVPSH-TIHYGHIVDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+ +++ ++ V  +P++FT ED  E + HGG+  VN +L+ L      RLA PGEF++
Sbjct: 61  NSGQTVEEAMVSVMRAPKTFTREDVVEINCHGGLVSVNRVLQ-LVLTNGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    ++++ M G LS    +    +    + +E +
Sbjct: 120 RAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKRIRELRQAILETLAHVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D++  +   ++    +++  I   +   + G+I+R G   VI+G  N GKSSL
Sbjct: 180 IDYPEYDDIEEMTPHLLMEKAQYVREQIEKLLQTAQQGKILREGLATVIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R++  
Sbjct: 240 LNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGVERSWQM 299

Query: 296 VENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
           ++ ADLILL+    + + ++ E  F   K +DFI I  K+DL      + D +     G 
Sbjct: 300 LKEADLILLVLNYHEPLTAEDEKLFDMVKGMDFIVIVNKTDLPQHI--DMDRVKQLAGGR 357

Query: 350 GL-------EELINKIKSILSNKF-----KKLPFSIPSHKRHLYHLSQTVRYLEMA-SLN 396
            +       E+ I  +++ +SN F     +    +  S+ RH+  L Q  + +E A S  
Sbjct: 358 PIITTSLLHEKGIEDLETAISNMFFSGAVEAGDLTYVSNSRHIALLQQAKKAVEDAISGI 417

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E    +D++  +L  A   LG+I G    E L+D +FS+FC+GK
Sbjct: 418 ESGMPVDLVQIDLTRAWELLGEIIGDTVHESLIDQLFSQFCLGK 461


>gi|302877170|ref|YP_003845803.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B]
 gi|307687869|ref|ZP_07630315.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B]
 gi|302580027|gb|ADL54039.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B]
          Length = 459

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 159/472 (33%), Positives = 268/472 (56%), Gaps = 48/472 (10%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFF 54
            E +TI A++T      ISIIR+SG S   V   + +          KP+    ++RY  
Sbjct: 2   KEFDTIAAIATPIGEGGISIIRISGNSALSVASKLFRSANGKDLMDIKPY----TMRYGN 57

Query: 55  GLD---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
            +D     I+D+ ++    +P+SFT ED+ E + HGG+     ILE + K   +R+A+PG
Sbjct: 58  IIDLENEEIIDEVIVSYMKAPKSFTAEDTVEINCHGGLISTKRILEVVLKQ-GVRIADPG 116

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF++RAF NG+IDL +AE++ D+I+++T++  + ++    G +S       ++L  + + 
Sbjct: 117 EFTKRAFLNGRIDLSQAEAVMDIITAKTDLAMKSAVAQSGGRVSREIKVLREELLAMIAH 176

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           IEA +D+ E+ D++  ++++ +ND+  L+  I   +   + G+I+R G   VI+G  N G
Sbjct: 177 IEATVDYPED-DLEEMTAEKTINDLNKLQERIEYLLKTAEEGKILREGLSTVIVGKPNVG 235

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL N L  ++ AIVTD+ GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G+++
Sbjct: 236 KSSLLNLLTNENRAIVTDVAGTTRDVIEEYINMDGVPIKVIDTAGIRETDDLVEKIGVEK 295

Query: 292 TFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYSTYTEE----- 338
           +  ++E ADLI+L+  ++S +E+         + K+  +I +  KSDL     +E     
Sbjct: 296 SKEKIEEADLIILM--LDSSRELDEEDLKIADYIKDKKYIVLFNKSDLKGKLKKEDIQCL 353

Query: 339 ---YDHLISSFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLY----HLSQTVR 388
              Y   +S F GEG+E L   IK +  +   K +++  +   HK  LY    ++S  + 
Sbjct: 354 NSKYMIDVSVFNGEGIERLKEIIKELFFSGEIKSQEILITNSRHKDVLYRANDNISNAIE 413

Query: 389 YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L+  S       +D+ + +LR A  + G+ITG    E L+D IF +FC+GK
Sbjct: 414 ALKNTS------AIDLASIDLRNAWSNFGEITGDTLAEDLIDKIFKEFCLGK 459


>gi|325519719|gb|EGC99039.1| tRNA modification GTPase TrmE [Burkholderia sp. TJI49]
          Length = 464

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 154/466 (33%), Positives = 245/466 (52%), Gaps = 35/466 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPF-PRKASLRYFFGLD 57
           + + I A++T A    I ++R+S       +   + + +C +  P  PR AS   F    
Sbjct: 5   DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ--PLAPRHASYVPFLDAH 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFS 114
           G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+
Sbjct: 63  GAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D + ++R  +EA
Sbjct: 123 RRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVINLRMLVEA 182

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSS
Sbjct: 183 TLDFPEEE-IDFLEAADARGKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSS 241

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N LA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+ 
Sbjct: 242 LLNVLAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWS 301

Query: 295 EVENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLY---------STYT 336
           E+E AD++L L  ++S+  ++         FP  +  + +  K+DL          +   
Sbjct: 302 EIERADVVLHL--LDSRTGMTADDVAIAARFPDGVPVVRVLNKTDLTGVPASVEHPAAEG 359

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL--SQTVRYLEMAS 394
           +  D  +S+  G+G++ L  ++  I   +       + + +RHL  L  +Q         
Sbjct: 360 DLTDVHLSAKRGDGIDLLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQAHLAHAADH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|312623584|ref|YP_004025197.1| tRNA modification GTPase trme [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312204051|gb|ADQ47378.1| tRNA modification GTPase TrmE [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 455

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 170/458 (37%), Positives = 251/458 (54%), Gaps = 25/458 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLD----G 58
           E +TI A+ST      I I+R+SG + F + +  I  +K    +   +RY   +D     
Sbjct: 2   EFDTIVAISTPIGTGGIGIVRISGKNAFDIAQKLIRSRKYKTVKDIPIRYAALVDVYDGD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ +LI F SP S+TGED  E   HGG+ V+  ILE   K    R A PGEF++RAF
Sbjct: 62  EFVDEAILIKFKSPHSYTGEDVVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I+S+T + ++ + + + G LS    +    L ++ + IEA +DF
Sbjct: 121 LNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSRRIEEISQLLLNMVASIEASIDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           SE E V   S  E+L  I      I   I   + G++I++G   VI+G  N GKSSL N 
Sbjct: 181 SEHE-VDEVSKDEILFTIDAALEKIEKLIKSYETGKVIKSGIYTVIVGRPNVGKSSLLNR 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L K++ AIVTDIPGTTRDV+   LD+EG  + ++DTAG+R+T+DIVEK G+K+T   +E 
Sbjct: 240 LLKEEKAIVTDIPGTTRDVIEEVLDIEGVPIILADTAGVRKTEDIVEKIGVKKTLESIER 299

Query: 299 ADLILLLKE----INSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL-- 351
           ADL+L + E    +    EI    KN  FI I  K D     ++  D +   F  EG+  
Sbjct: 300 ADLVLFMVESSGILQEDLEIFETIKNKRFIVIVNKIDKEVKVSQ--DDIKRIFGKEGIFI 357

Query: 352 -------EELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
                   EL+ K     +L+   +     + ++ RH   L +   +L  A  N     L
Sbjct: 358 SVEHDKNLELVEKAIANEVLNQNIETHDSVLITNLRHKELLLKAKEFLVSAKENIYAVPL 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           DI++ +++ A  SL +ITG    E ++D IFS FCIGK
Sbjct: 418 DILSIDIKNALDSLYQITGKNVTEDMVDRIFSMFCIGK 455


>gi|53717720|ref|YP_106706.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei K96243]
 gi|53724896|ref|YP_104852.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 23344]
 gi|126440482|ref|YP_001057151.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 668]
 gi|126454342|ref|YP_001064396.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106a]
 gi|134281363|ref|ZP_01768071.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 305]
 gi|167717471|ref|ZP_02400707.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei DM98]
 gi|167736506|ref|ZP_02409280.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 14]
 gi|167813583|ref|ZP_02445263.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 91]
 gi|167822125|ref|ZP_02453596.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 9]
 gi|167843730|ref|ZP_02469238.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei B7210]
 gi|167892208|ref|ZP_02479610.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 7894]
 gi|167900719|ref|ZP_02487924.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei NCTC
           13177]
 gi|167908938|ref|ZP_02496029.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 112]
 gi|167916978|ref|ZP_02504069.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei BCC215]
 gi|217423934|ref|ZP_03455434.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 576]
 gi|226193161|ref|ZP_03788771.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pakistan
           9]
 gi|237810287|ref|YP_002894738.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei MSHR346]
 gi|242317582|ref|ZP_04816598.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106b]
 gi|254184155|ref|ZP_04890746.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1655]
 gi|254194641|ref|ZP_04901072.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei S13]
 gi|254298579|ref|ZP_04966030.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 406e]
 gi|81380766|sp|Q63YV9|MNME_BURPS RecName: Full=tRNA modification GTPase mnmE
 gi|81603688|sp|Q62EM6|MNME_BURMA RecName: Full=tRNA modification GTPase mnmE
 gi|205829148|sp|A3NPX5|MNME_BURP0 RecName: Full=tRNA modification GTPase mnmE
 gi|205829149|sp|A3N480|MNME_BURP6 RecName: Full=tRNA modification GTPase mnmE
 gi|205829160|sp|A1V7D3|MNME_BURMS RecName: Full=tRNA modification GTPase mnmE
 gi|205829167|sp|A3MS17|MNME_BURM7 RecName: Full=tRNA modification GTPase mnmE
 gi|205829168|sp|A2S8D8|MNME_BURM9 RecName: Full=tRNA modification GTPase mnmE
 gi|52208134|emb|CAH34064.1| putative tRNA modification GTPase [Burkholderia pseudomallei
           K96243]
 gi|52428319|gb|AAU48912.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 23344]
 gi|126219975|gb|ABN83481.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 668]
 gi|126227984|gb|ABN91524.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106a]
 gi|134247030|gb|EBA47116.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 305]
 gi|157808553|gb|EDO85723.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 406e]
 gi|169651391|gb|EDS84084.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei S13]
 gi|184214687|gb|EDU11730.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1655]
 gi|217392997|gb|EEC33019.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 576]
 gi|225934761|gb|EEH30738.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pakistan
           9]
 gi|237505603|gb|ACQ97921.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei MSHR346]
 gi|242140821|gb|EES27223.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106b]
          Length = 467

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 242/468 (51%), Gaps = 36/468 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T +    I ++RLS       +   + + +C  +   PR AS   F    G
Sbjct: 5   DSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGARL-MPRHASYVPFLDGAG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 64  EPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAGLRETEDEVEKIGIARTWGE 302

Query: 296 VENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLY------------STYT 336
           +E AD++L L +  S            FP  +  + +  K+DL             +   
Sbjct: 303 IERADVVLHLLDARSGLGPGDEAIAARFPDGVPVVRVLNKTDLTGAPASVTRTGGGAARA 362

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRYLEM 392
           +  +  +S+  G+G++ L  ++  I   +       + + +RHL  L    +   R  E 
Sbjct: 363 DVCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHLARAAEH 421

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  N +   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 422 AEQNAQ--ALDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFCIGK 467


>gi|296392434|ref|ZP_06881909.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PAb1]
          Length = 426

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 234/416 (56%), Gaps = 26/416 (6%)

Query: 46  RKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL 105
           R A    F    G+++D+GL + FP P SFTGED  E   HGG  V++ +++   ++   
Sbjct: 16  RHAHYGPFLDAGGQVIDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLEL-GA 74

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           R A PGEFS RAF N K+DL +AE++ADLI + +E   R ++  + GE S       ++L
Sbjct: 75  RQARPGEFSERAFLNDKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQL 134

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
             +R ++EA +DF EEE +   +   VL  +  ++ ++S+   +   G ++R+G  +VI 
Sbjct: 135 ISLRIYVEAAIDFPEEE-IDFLADGHVLGLLEKVRTELSTVQREASQGALLRDGMTVVIA 193

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  NAGKSSL NALA ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+T+D VE
Sbjct: 194 GRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHVE 253

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEIS----FPKNID-------FIFIGTKSDLYST 334
           K G++R    +  AD +LL+ +  + +       +P+ +D          I  K+DL + 
Sbjct: 254 KIGVERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTE 313

Query: 335 ---YTEEYD-HL---ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQT 386
                E  D H+   +S+ TG GLE L   +K+ +   F++   S   + +RHL  L Q 
Sbjct: 314 SIGLEESADGHVTITLSARTGAGLELLREHLKACMG--FEQTAESGFSARRRHLEALRQA 371

Query: 387 VRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + L+   + L     G +++AE+LR A   LG+ITG    + LL  IFS FCIGK
Sbjct: 372 GQALKHGHSQLIHNGAG-ELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 426


>gi|225077529|ref|ZP_03720728.1| hypothetical protein NEIFLAOT_02592 [Neisseria flavescens
           NRL30031/H210]
 gi|284800154|ref|ZP_06390566.1| tRNA modification GTPase TrmE [Neisseria subflava NJ9703]
 gi|224951149|gb|EEG32358.1| hypothetical protein NEIFLAOT_02592 [Neisseria flavescens
           NRL30031/H210]
 gi|284795881|gb|EFC51228.1| tRNA modification GTPase TrmE [Neisseria subflava NJ9703]
          Length = 335

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 126/327 (38%), Positives = 194/327 (59%), Gaps = 9/327 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  + TI A++T      + +IRLSG +   + + +   K P PR A    F G DG+ 
Sbjct: 1   MSATQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGQP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+L+ F +P SFTGED  E   HGG  V++ +L    ++   R+A PGEF++RAF N
Sbjct: 61  IDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + ++   R+++  + G  S    + +D L  +R  +EA LDF E
Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  + + ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 180 E-DIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D+AIVTDI GTTRD +   + L+G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298

Query: 301 LILLL----KEINSKKEI---SFPKNI 320
           + L+L    + +N+K +    S P+ +
Sbjct: 299 VALILIDPREGVNAKTQAILNSLPEGL 325


>gi|74318842|ref|YP_316582.1| tRNA modification GTPase TrmE [Thiobacillus denitrificans ATCC
           25259]
 gi|123611091|sp|Q3SF39|MNME_THIDA RecName: Full=tRNA modification GTPase mnmE
 gi|74058337|gb|AAZ98777.1| tRNA modification GTPase TrmE [Thiobacillus denitrificans ATCC
           25259]
          Length = 446

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 153/444 (34%), Positives = 241/444 (54%), Gaps = 20/444 (4%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I AV+T      + ++R+SGP    +   I  +  P PR  +   F    G  LD+G+ +
Sbjct: 12  IAAVATAPGRGGVGVVRVSGPDVGPLAVAILGRL-PEPRHVTYCRFLDRAGAPLDEGIAL 70

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127
            F +P SFTGE   E   HGG  V++ IL+   ++   RLA PGEFSRRAF NGK+DL +
Sbjct: 71  YFAAPHSFTGEHVLELQGHGGPVVLDLILQRCLEL-GARLAEPGEFSRRAFLNGKLDLAQ 129

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           AE++ADLI + +    R ++  +SGE S+   + +++L  +R+ +EA LDF +EE +   
Sbjct: 130 AEAVADLIDAASAEAARSALRSLSGEFSARIDELVEQLVRLRTLVEATLDFPDEE-IDFL 188

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
              +    +  +   +++  SQ + G ++R G  +V++G  N GKSSL N LA  D AIV
Sbjct: 189 EQADAFGRLKAIGTSVAAVRSQARQGVLLREGLTVVLVGQPNVGKSSLLNRLAGFDAAIV 248

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           T+I GTTRD +   + +EG  + + DTAG+RET D +E+ GI R++  VE AD+ LLL +
Sbjct: 249 TEIAGTTRDTVREAIQIEGVPIHVIDTAGLRETSDPIEQLGIARSWEAVEKADVALLLVD 308

Query: 308 ----INSKKEISFPKNIDFIFIGTKSDL-------YSTYTEEYDHLISSFTGEGLEELIN 356
               + + +     K  D + +   + +        +T  E +   +S+ +GEG++ L  
Sbjct: 309 AAHGVGAHEAQILAKLPDVVRLTVHNKIDVAGEAPRATADEIW---LSAKSGEGVDLLRA 365

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           K+      +      +  +  RHL  L +  R++E A    +   L++ AE LRLA  +L
Sbjct: 366 KLLQAAGWQAAG-EGAFMARTRHLDALDRAARHIEQAGAVARQ--LELFAEELRLAQAAL 422

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            +ITG    + LL  IF  FCIGK
Sbjct: 423 AEITGEFSADALLGEIFGSFCIGK 446


>gi|90194068|gb|ABD92595.1| ThdF [Histophilus somni]
          Length = 424

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 148/421 (35%), Positives = 239/421 (56%), Gaps = 22/421 (5%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SGP   QV E +  K    PR A+   F   DG +LD+G+ + F +P SFTGE
Sbjct: 7   GVGILRVSGPLAQQVAEQVLGKTLT-PRMANYLPFKDSDGSVLDQGIALYFKAPNSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQIVMDLLLKRILQIDGIRLARPGEFSEQAFLNDKLDLAQAEAIADLIEAS 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +E   R +++ + GE S+   + +D + ++R+++EA +DF +EE +   +  ++   +  
Sbjct: 126 SEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIETHLRE 184

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +   ++   ++ K G I+R G K+VI G  NAGKSSL N LA ++ AIVTDI GTTRDVL
Sbjct: 185 IIAKLAKVKNEAKQGAILREGMKVVIAGRPNAGKSSLLNTLAGREAAIVTDIAGTTRDVL 244

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----------I 308
              + ++G  + I DTAG+R+  D VEK GI+R + E+E AD ILL+ +          +
Sbjct: 245 REHIHIDGMPLHIIDTAGLRDATDEVEKIGIRRAWDEIEQADRILLILDSTENQVELDLV 304

Query: 309 NSKKEISFPKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTGEGLEELINKIKSIL 362
            S+     P +I    +  K+DL   +   +E + L    +S+ T +G++ L   +K  +
Sbjct: 305 RSEFMAKLPPHIPLTIVRNKADLSGEAEVLDEQNGLTVISLSAKTQKGVDLLRQHLKQSM 364

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKIT 420
             +         + +RHL  L Q   +L+  +  L E   G +++AE LR+    L +IT
Sbjct: 365 GYQVCT-EGGFLARRRHLEALEQADIHLQAGLIQLTEFYAG-ELLAEELRIVQHHLSEIT 422

Query: 421 G 421
           G
Sbjct: 423 G 423


>gi|166714251|ref|ZP_02245458.1| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 446

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 150/449 (33%), Positives = 240/449 (53%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +   +   PR A    F    G +
Sbjct: 1   MSSSTSTIVAIASAAGTGGVGIVRLSGPQSRQIAVQLGVARLQ-PRHAHYARFRDAQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S         LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSRRVDAVAHTLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  +      +V + +   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 EP-LDTLGGNQVRDGLTQARTLLAQLLRDAERGRTLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297

Query: 301 LILLLKEINSKK--EISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +    +    ID +    +I  K DL S     +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDPRVAREAIGDAIDAVPRQLWIHNKCDLLSDAAPLDVNAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++ +   +  + +     +  RH+  L +  R+++ A L      L++ AE LRL
Sbjct: 358 QLHIRLRELAFGDGVESVDGEFSARTRHVEALRRAERHVDAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKISADDLLGKIFSSFCIGK 446


>gi|170288479|ref|YP_001738717.1| tRNA modification GTPase TrmE [Thermotoga sp. RQ2]
 gi|205829186|sp|B1L9N6|MNME_THESQ RecName: Full=tRNA modification GTPase mnmE
 gi|170175982|gb|ACB09034.1| tRNA modification GTPase TrmE [Thermotoga sp. RQ2]
          Length = 450

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 161/455 (35%), Positives = 257/455 (56%), Gaps = 26/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI AV+T     AI+I+RLSGP  +++ +  +  + K  PRKA +  +   +G  +D+ 
Sbjct: 2   DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKA-IHGWIHENGEDVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ + SP+S+TGED  E   HGG  VV  +L+   K    R+A PGEF++RAF NGK+D
Sbjct: 61  VVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLK-SGARMAEPGEFTKRAFLNGKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE++ DLI +++E   +LS+  + G L         +L  + + I  +LD+ +E + 
Sbjct: 120 LTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEIET 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              ++ EV+  +  +K  ++  + +   G ++  G ++VI+G  N GKS+L N L  +D 
Sbjct: 180 ---NTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDR 236

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIVTDIPGTTRDV++ ++ + G L +I DTAG+R ET+D+VE+ GI+RT  E+E AD++L
Sbjct: 237 AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVL 296

Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEY--------DHL--ISSFT 347
            + + +S      +K +   KN  ++ +  K D+     EE          H+  IS+  
Sbjct: 297 FVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALK 356

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           GEGLE+L   I       F++   S+ ++ R    L     YLE A  SL E    +D+ 
Sbjct: 357 GEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGYLEDAIKSLKE-GMPVDMA 415

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +L  A   L ++TG    E LLD IFS FC+GK
Sbjct: 416 SIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 450


>gi|121611908|ref|YP_999715.1| tRNA modification GTPase TrmE [Verminephrobacter eiseniae EF01-2]
 gi|205829187|sp|A1WSU0|MNME_VEREI RecName: Full=tRNA modification GTPase mnmE
 gi|121556548|gb|ABM60697.1| tRNA modification GTPase trmE [Verminephrobacter eiseniae EF01-2]
          Length = 490

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 163/490 (33%), Positives = 246/490 (50%), Gaps = 59/490 (12%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           + I A+++ A   AI I+R+SG +   + + +C +    PR A+   F    G+ +D+GL
Sbjct: 5   DPIVAIASAAGRGAIGIVRVSGNALGALAQALCGRALQ-PRMATYLAFRDARGQPIDQGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-------------MPNLRLANPGE 112
            + FP P S+TGED  E   HGG  V+  +L    +             +P LRLA PGE
Sbjct: 64  ALYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAGADPATGRPCLPGLRLAQPGE 123

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+ RAF N KIDL +AE++ADLI + TE   R +   +SG  S+      D L  +R+ +
Sbjct: 124 FTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSAGIHGLCDALIALRTLV 183

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF EEE        +    +  L+  + + + Q + G ++R+G ++VI G  NAGK
Sbjct: 184 EASLDFPEEE-TDFLHQADARGQLSRLRQALGAVLQQARQGALLRDGIEVVIAGQPNAGK 242

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT + GTTRD +   + +EG  ++I DTAG+R +DD VE+ GI R+
Sbjct: 243 SSLLNALAGAELAIVTPVAGTTRDKVQQTIQIEGVPLRIIDTAGLRASDDEVERIGIARS 302

Query: 293 FLEVENADLILLL---------KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTE 337
           +  +  AD +L L         K I    EI        P  +  I +  K D  +   E
Sbjct: 303 WEAMAAADAVLFLHDLARAQTPKYIADDAEIERALARKLPPGVAVIDVWNKLDCVAAPAE 362

Query: 338 ------------------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                                        +S+ TG+GL+ L   +  +    ++ +P  I
Sbjct: 363 LAAPTAPTESAAVPPASARPAPAPRPAVQLSARTGQGLDGLRRILLEVAG--WQSVPEGI 420

Query: 374 P-SHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
             +  RH+  L     +LE A+  L  +   L+++AE LRLA  +L  ITG    + LL 
Sbjct: 421 CIARARHVQALQMAAAHLEQAADQLQARGAALELLAEELRLAQNALDSITGAFTSDDLLG 480

Query: 431 IIFSKFCIGK 440
            IF++FCIGK
Sbjct: 481 AIFARFCIGK 490


>gi|153956503|ref|YP_001397268.1| tRNA modification GTPase TrmE [Clostridium kluyveri DSM 555]
 gi|189036197|sp|A5N451|MNME_CLOK5 RecName: Full=tRNA modification GTPase mnmE
 gi|146349361|gb|EDK35897.1| TrmE [Clostridium kluyveri DSM 555]
          Length = 459

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 158/465 (33%), Positives = 272/465 (58%), Gaps = 36/465 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFFG 55
           E +TI A++T      ISIIR+SG +   +   I + K        KP+    S+RY F 
Sbjct: 3   EFDTITAIATVLGEGGISIIRISGENSLSIANSIFRGKNHRDLLDIKPY----SMRYGFI 58

Query: 56  LD---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
           ++   G ILD+ L+     P+S+T ED  E + HGG+     ++EE+ K    RLA PGE
Sbjct: 59  IEKDTGEILDEVLVSFMKGPKSYTAEDIVEINCHGGVLATRKVMEEVIK-AGARLAEPGE 117

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NG+IDL +AE++ D+I +++ +  + +++   G++S       ++L  I + I
Sbjct: 118 FTKRAFLNGRIDLSQAEAVIDIIRAKSHISVKSAVQQSQGKISKEINLLREELLEIIAHI 177

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +++ EE D++  +S ++   I  + ++I+  +S  + G+I+R G  +VI+G  N GK
Sbjct: 178 EATVNYPEE-DLEEMTSDQIYLKINKILDEINYILSNAEEGKIVREGLSVVIVGKPNVGK 236

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N+L +++ AIVTDIPGTTRDV+   +++ G  +KI DTAGIR+TDDIVEK G++++
Sbjct: 237 SSLLNSLIEENKAIVTDIPGTTRDVIEEYMNIGGIPIKIVDTAGIRKTDDIVEKIGVEKS 296

Query: 293 FLEVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLISS 345
             +++ +DL++L+    KE++   K+ I++  +  +I +  K+D+       +  +L S 
Sbjct: 297 KEKIDESDLVILMLDSSKELDEEDKEIINYVNHRKYIILLNKTDIGDKIDLNDICNLNSR 356

Query: 346 F-------TGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
           F        GEGL+++ N IK +      K + L  +   HK  L    ++   +E    
Sbjct: 357 FIIKTSIKNGEGLDKIKNCIKELFFKGEIKSEDLFITNTRHKEGLIRAKESC--IEALQT 414

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    +D+++ +++ A ++LGKITG    E ++D IFS+FC+GK
Sbjct: 415 LKSTLSIDLVSIDIKNAWINLGKITGDTLEEDIIDKIFSQFCLGK 459


>gi|122879374|ref|YP_203273.6| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|205829214|sp|Q5GTT5|MNME_XANOR RecName: Full=tRNA modification GTPase mnmE
          Length = 446

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 241/449 (53%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +   +   PR A    F    G +
Sbjct: 1   MSSSTSTIVAIASAAGTGGVGIVRLSGPQSRQIAVQLGVARLQ-PRHAHYARFRDAQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++AD+I++      R +   + G  S         LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADVIAAGDLRAARAARRALDGVFSRRVDAVAHTLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  +      +V + +   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 EP-LDTLGGNQVRDGLTQARTLLAQLLRDAERGRTLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E AD
Sbjct: 238 GSERAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297

Query: 301 LILLLKEINSKK--EISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +    +    ID +    +I  K DL S     +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDPQAARAAIGDAIDAVPRQLWIHNKCDLLSDAAPLDVNAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++ + L +  + +     +  RH+  L +  R+++ A L      L++ AE LRL
Sbjct: 358 QLHIRLRELALGDGVESVDGEFSARTRHVEALRRAERHVDAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKISADDLLGKIFSSFCIGK 446


>gi|90194076|gb|ABD92599.1| ThdF [Nicoletella semolina]
          Length = 441

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 155/442 (35%), Positives = 242/442 (54%), Gaps = 34/442 (7%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            I I+R+SGP    V + +  K  P PR A    F   +  ILD+G+ + F +P SFTGE
Sbjct: 7   GIGILRVSGPLASTVAQTVLGKC-PKPRVADYLPFRDENNDILDQGIALFFKAPHSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ + K+  +R+A  GEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQVILDLLLQRILKIHGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S    Q ++ + ++R+++EA +DF +EE +   +  ++   LND
Sbjct: 126 SEQAARSALKSLQGEFSHKINQLVEAVIYLRTYVEAAIDFPDEE-IDFLADGKIESKLND 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+     + +   Q K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTTR
Sbjct: 185 II---AQVDAVRYQAKQGTILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           DVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD ILL+ + N  + ++
Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWSEIEQADHILLMIDSNQSQAVN 301

Query: 316 F-----------PKNIDFIFIGTKSDLYS--------TYTEEYDHLI---SSFTGEGLEE 353
           F           P N+    I  K DL          + T+  +  +   S+ T  G++ 
Sbjct: 302 FKTEYADFLQKLPPNLPLTVIRNKVDLSGENEGIEALSQTDRANTTVIRLSAQTQLGVDL 361

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRL 411
           L   +K  +  +         + +RHL  L+    +L+     L +   G +++AE LRL
Sbjct: 362 LREHLKKSMGYQ-SSTEGGFIARRRHLEALNLAANHLQRGHVQLTQFFAG-ELLAEELRL 419

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
              +L +ITG    + LL  IF
Sbjct: 420 VQNALSEITGQFTSDDLLGNIF 441


>gi|332521867|ref|ZP_08398316.1| tRNA modification GTPase TrmE [Lacinutrix algicola 5H-3-7-4]
 gi|332042539|gb|EGI78741.1| tRNA modification GTPase TrmE [Lacinutrix algicola 5H-3-7-4]
          Length = 464

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 167/475 (35%), Positives = 263/475 (55%), Gaps = 46/475 (9%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEF---ICKKKKPFPRKASLRYFFG-- 55
           M+   +TI A++T +   A++IIRLSG +   +        KK K   ++ +     G  
Sbjct: 1   MSFNNDTIVALATASGAGAVAIIRLSGEAAITIANAGFKSVKKNKSLLKQKTHTIHLGHI 60

Query: 56  LDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
           +DG RI+D+ L+ VF +P S+TGE+  E   HG + +   I++ L      R+A+ GEF+
Sbjct: 61  VDGDRIIDEVLVSVFKNPNSYTGENVVEISCHGSVYIQQEIIQ-LFLRNGCRMADAGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF NGK+DL +AE++ADLI+S+ E   +++M+ M G  SS   +  ++L +  S +E 
Sbjct: 120 LRAFLNGKLDLSQAEAVADLIASDNEASHQIAMQQMRGGFSSEIAKLREELLNFASLLEL 179

Query: 175 DLDFSEEE----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           +LDF+EE+    D   F  KE++N I F+   +   I    +G +I+NG  + I+G  N 
Sbjct: 180 ELDFAEEDVEFADRTQF--KELINRITFV---LKRLIDSFAVGNVIKNGIPVAIVGEPNV 234

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKS+L NAL  ++ AIV+DI GTTRD +  +L +EG   +  DTAGIRET D+VE  GIK
Sbjct: 235 GKSTLLNALLNEERAIVSDIAGTTRDTIEDELVIEGIGFRFIDTAGIRETKDVVESIGIK 294

Query: 291 RTFLEVENADLILLL---KEINSKK-----EISFPKN----IDFIFIGTKSD-LYSTYTE 337
           +TF ++E A +++LL   +E  ++      EI   KN       + I  K D L ++ TE
Sbjct: 295 KTFEKMEQAQVVILLFSAEEFQTESQRLILEIEKIKNRFPLKPLVIIANKIDTLNASETE 354

Query: 338 EYD------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
           E        HL+S+ +G G+E L  K+   ++    +   +I ++ RH   L +      
Sbjct: 355 ELKSKIDNIHLLSAKSGIGVEALKEKLIGFVNTGALRNNETIVTNTRHYDSLLKA----- 409

Query: 392 MASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +N+   GL      D++A ++R A    G+ITG +  + LL  IF+ FCIGK
Sbjct: 410 FEEINKVKAGLESGLSGDLMAIDVRQALYHFGEITGAITNDDLLGNIFANFCIGK 464


>gi|54020066|ref|YP_115685.1| tRNA modification GTPase TrmE [Mycoplasma hyopneumoniae 232]
 gi|81823547|sp|Q601N0|MNME_MYCH2 RecName: Full=tRNA modification GTPase mnmE
 gi|53987239|gb|AAV27440.1| thiophene and furan oxidation protein [Mycoplasma hyopneumoniae
           232]
          Length = 442

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 167/447 (37%), Positives = 255/447 (57%), Gaps = 20/447 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGRI 60
           +TI A+++G +  AISIIR+SGP+ F++ E  F+ K  K      S+   FG    D + 
Sbjct: 4   DTICAIASGQINQAISIIRISGPNAFKIMEKIFLGKVGK------SMEITFGWIHDDNQK 57

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L++ F   ++F GED+ E + HGG+   N ILE + K    RLANPGEFS RAF N
Sbjct: 58  IDQVLVLWFAGNKNFVGEDTVEINAHGGVLNTNLILELILKTKLARLANPGEFSLRAFLN 117

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL++A+++ DLI +E ++Q + ++    G+ S+     I+K+  I   IE ++D+ E
Sbjct: 118 GKIDLVKAQAINDLIHAEVKVQHQAALNQFLGKSSNFIKNLIEKIEEIIGIIEVNIDYPE 177

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  +S  +L  I  L  D    I       +I  G K  ++G  N+GKSSL N L 
Sbjct: 178 YDDVEILTSDVLLPRINQLLADFDQLIKIANNSRLIYQGIKTCLVGAPNSGKSSLLNILI 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AI+++IPGTTRDV+  +  L+G L K+ DTAGIR+T + +E+ GI++++  ++ AD
Sbjct: 238 NENKAIISEIPGTTRDVVEGNFVLDGLLFKLFDTAGIRKTTEKIEQIGIEKSYESIKKAD 297

Query: 301 LILLLKEINSK-------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           LIL + + + K       K  + P  I ++ I  KSDL     E  D ++ S   + +E 
Sbjct: 298 LILHIIDASEKNRQNLDLKAKTRPDQI-YLKIYNKSDLLENQEEFKDEILISAKYQKIEN 356

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L+ KIKSI +   K   F   S +     L + +  L+  +  E   G +I   +LR+A 
Sbjct: 357 LLEKIKSIFAFLGKNKEFVANSFQISQIELGK-LAILDAKTSLESGFGPEIAIVDLRIAW 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L  I G VD E LLD IFSKFC+GK
Sbjct: 416 KELKTIFGRVDDENLLDSIFSKFCLGK 442


>gi|121598239|ref|YP_994136.1| tRNA modification GTPase TrmE [Burkholderia mallei SAVP1]
 gi|124384367|ref|YP_001028207.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10229]
 gi|126449818|ref|YP_001083053.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10247]
 gi|238563702|ref|ZP_00438440.2| tRNA modification GTPase TrmE [Burkholderia mallei GB8 horse 4]
 gi|251767367|ref|ZP_04820085.1| tRNA modification GTPase TrmE [Burkholderia mallei PRL-20]
 gi|254175200|ref|ZP_04881861.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 10399]
 gi|254201961|ref|ZP_04908325.1| tRNA modification GTPase TrmE [Burkholderia mallei FMH]
 gi|254207294|ref|ZP_04913645.1| tRNA modification GTPase TrmE [Burkholderia mallei JHU]
 gi|254359603|ref|ZP_04975874.1| tRNA modification GTPase TrmE [Burkholderia mallei 2002721280]
 gi|121227049|gb|ABM49567.1| tRNA modification GTPase TrmE [Burkholderia mallei SAVP1]
 gi|124292387|gb|ABN01656.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10229]
 gi|126242688|gb|ABO05781.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10247]
 gi|147747855|gb|EDK54931.1| tRNA modification GTPase TrmE [Burkholderia mallei FMH]
 gi|147752836|gb|EDK59902.1| tRNA modification GTPase TrmE [Burkholderia mallei JHU]
 gi|148028817|gb|EDK86749.1| tRNA modification GTPase TrmE [Burkholderia mallei 2002721280]
 gi|160696245|gb|EDP86215.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 10399]
 gi|238520163|gb|EEP83625.1| tRNA modification GTPase TrmE [Burkholderia mallei GB8 horse 4]
 gi|243063001|gb|EES45187.1| tRNA modification GTPase TrmE [Burkholderia mallei PRL-20]
          Length = 488

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 242/468 (51%), Gaps = 36/468 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T +    I ++RLS       +   + + +C  +   PR AS   F    G
Sbjct: 26  DSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGARL-MPRHASYVPFLDGAG 84

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 85  EPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEPGEFTR 144

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +EA 
Sbjct: 145 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVEAT 204

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 205 LDFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 263

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+ E
Sbjct: 264 LNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAGLRETEDEVEKIGIARTWGE 323

Query: 296 VENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLY------------STYT 336
           +E AD++L L +  S            FP  +  + +  K+DL             +   
Sbjct: 324 IERADVVLHLLDARSGLGPGDEAIAARFPDGVPVVRVLNKTDLTGAPASVTRTGGGAARA 383

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRYLEM 392
           +  +  +S+  G+G++ L  ++  I   +       + + +RHL  L    +   R  E 
Sbjct: 384 DVCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHLARAAEH 442

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  N +   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 443 AEQNAQ--ALDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFCIGK 488


>gi|84626025|ref|YP_453397.1| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|123520413|sp|Q2NX54|MNME_XANOM RecName: Full=tRNA modification GTPase mnmE
 gi|84369965|dbj|BAE71123.1| tRNA modification GTPase trmE [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 446

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 241/449 (53%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +   +   PR A    F    G +
Sbjct: 1   MSSSTSTIVAIASAAGTGGVGIVRLSGPQSRQIAVQLGVARLQ-PRHAHYARFRDAQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++AD+I++      R +   + G  S         LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADVIAAGDLRAARAARRALDGVFSRRVDAVAHTLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  +      +V + +   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 EP-LDTLGGNQVRDGLTQARTLLAQLLRDAERGRTLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E AD
Sbjct: 238 GSERAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297

Query: 301 LILLLKEINSKK--EISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +    +    ID +    +I  K DL S     +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDPQAARAAIGDAIDAVPRQLWIHNKCDLLSDAAPLDVNAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++ + L +  + +     +  RH+  L +  R+++ A L      L++ AE LRL
Sbjct: 358 QLHIRLRELALGDGVEGVDGEFSARTRHVEALRRAERHVDAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKISADDLLGKIFSSFCIGK 446


>gi|219856806|ref|YP_002473928.1| hypothetical protein CKR_3463 [Clostridium kluyveri NBRC 12016]
 gi|219570530|dbj|BAH08514.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 465

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 158/465 (33%), Positives = 272/465 (58%), Gaps = 36/465 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFFG 55
           E +TI A++T      ISIIR+SG +   +   I + K        KP+    S+RY F 
Sbjct: 9   EFDTITAIATVLGEGGISIIRISGENSLSIANSIFRGKNHRDLLDIKPY----SMRYGFI 64

Query: 56  LD---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
           ++   G ILD+ L+     P+S+T ED  E + HGG+     ++EE+ K    RLA PGE
Sbjct: 65  IEKDTGEILDEVLVSFMKGPKSYTAEDIVEINCHGGVLATRKVMEEVIK-AGARLAEPGE 123

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NG+IDL +AE++ D+I +++ +  + +++   G++S       ++L  I + I
Sbjct: 124 FTKRAFLNGRIDLSQAEAVIDIIRAKSHISVKSAVQQSQGKISKEINLLREELLEIIAHI 183

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +++ EE D++  +S ++   I  + ++I+  +S  + G+I+R G  +VI+G  N GK
Sbjct: 184 EATVNYPEE-DLEEMTSDQIYLKINKILDEINYILSNAEEGKIVREGLSVVIVGKPNVGK 242

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N+L +++ AIVTDIPGTTRDV+   +++ G  +KI DTAGIR+TDDIVEK G++++
Sbjct: 243 SSLLNSLIEENKAIVTDIPGTTRDVIEEYMNIGGIPIKIVDTAGIRKTDDIVEKIGVEKS 302

Query: 293 FLEVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLISS 345
             +++ +DL++L+    KE++   K+ I++  +  +I +  K+D+       +  +L S 
Sbjct: 303 KEKIDESDLVILMLDSSKELDEEDKEIINYVNHRKYIILLNKTDIGDKIDLNDICNLNSR 362

Query: 346 F-------TGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
           F        GEGL+++ N IK +      K + L  +   HK  L    ++   +E    
Sbjct: 363 FIIKTSIKNGEGLDKIKNCIKELFFKGEIKSEDLFITNTRHKEGLIRAKESC--IEALQT 420

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    +D+++ +++ A ++LGKITG    E ++D IFS+FC+GK
Sbjct: 421 LKSTLSIDLVSIDIKNAWINLGKITGDTLEEDIIDKIFSQFCLGK 465


>gi|18311637|ref|NP_563571.1| tRNA modification GTPase TrmE [Clostridium perfringens str. 13]
 gi|110799764|ref|YP_697346.1| tRNA modification GTPase TrmE [Clostridium perfringens ATCC 13124]
 gi|168207742|ref|ZP_02633747.1| tRNA modification GTPase TrmE [Clostridium perfringens E str.
           JGS1987]
 gi|168211557|ref|ZP_02637182.1| tRNA modification GTPase TrmE [Clostridium perfringens B str. ATCC
           3626]
 gi|168214843|ref|ZP_02640468.1| tRNA modification GTPase TrmE [Clostridium perfringens CPE str.
           F4969]
 gi|169343475|ref|ZP_02864475.1| tRNA modification GTPase TrmE [Clostridium perfringens C str.
           JGS1495]
 gi|182626407|ref|ZP_02954160.1| tRNA modification GTPase TrmE [Clostridium perfringens D str.
           JGS1721]
 gi|21363002|sp|Q8XH30|MNME_CLOPE RecName: Full=tRNA modification GTPase mnmE
 gi|123344426|sp|Q0TLZ4|MNME_CLOP1 RecName: Full=tRNA modification GTPase mnmE
 gi|18146321|dbj|BAB82361.1| probable thiophen / furan oxidation protein [Clostridium
           perfringens str. 13]
 gi|110674411|gb|ABG83398.1| tRNA modification GTPase TrmE [Clostridium perfringens ATCC 13124]
 gi|169298427|gb|EDS80516.1| tRNA modification GTPase TrmE [Clostridium perfringens C str.
           JGS1495]
 gi|170660919|gb|EDT13602.1| tRNA modification GTPase TrmE [Clostridium perfringens E str.
           JGS1987]
 gi|170710445|gb|EDT22627.1| tRNA modification GTPase TrmE [Clostridium perfringens B str. ATCC
           3626]
 gi|170713713|gb|EDT25895.1| tRNA modification GTPase TrmE [Clostridium perfringens CPE str.
           F4969]
 gi|177908281|gb|EDT70834.1| tRNA modification GTPase TrmE [Clostridium perfringens D str.
           JGS1721]
          Length = 458

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 159/463 (34%), Positives = 267/463 (57%), Gaps = 33/463 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--------KKKPFPRKASLRYFFG 55
           E +TI A++T      I+IIR+SG    ++   I +          KP+    ++RY   
Sbjct: 3   EFDTIAAIATALGEGGIAIIRVSGNKALEIVNKIFRGINGKDLLDIKPY----TMRYGHM 58

Query: 56  LD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           +D    I+D+ ++     P SFT ED+ E + HGGI   N +L+ + K    RLA PGEF
Sbjct: 59  IDENNEIIDEVIVSFMKGPRSFTAEDTVEINCHGGIVATNKVLQNVIK-AGARLAEPGEF 117

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG+IDL +AE++ D+I+++TE+  + +M    G LS+       +   I + IE
Sbjct: 118 TKRAFLNGRIDLSQAEAVMDIITAKTELSMKSAMTQSQGRLSTEINNLRKEALDILALIE 177

Query: 174 ADLDFSEEEDVQNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
             +DF+E+++  + +   +V  D++ L+  +++ I     G++IR+G  +VI+G  N GK
Sbjct: 178 YAVDFTEDDEEPDETIPVKVKEDVITLRGKVNNLIDTADEGKLIRDGLSMVIVGKPNVGK 237

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NAL  +  AIVTDI GTTRDV+   ++L+G  V++ DTAGIRET+D+VEK G++++
Sbjct: 238 SSLLNALLNEKRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAGIRETEDVVEKIGVEKS 297

Query: 293 FLEVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHL--- 342
             ++  ADL++L+    +E++   K+ I + K+  +I +  K DL    + E  D+L   
Sbjct: 298 KEKINEADLVILMLDTSRELDEEDKEIIDYIKDRKYIVLLNKVDLDRKLSSEIVDNLENK 357

Query: 343 --ISSFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
             +S+ TG G+++L +KIK +  N     + +  +   HK  LY  S+ +    +  LN 
Sbjct: 358 IELSAKTGFGIDDLKSKIKDLFFNGSIDAESVMVTNTRHKEALYRASENLDG-ALNGLNN 416

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  LD+++  +  A  +LG+ITG    E L++ IF++FC GK
Sbjct: 417 NEF-LDLVSIYVTSALRALGEITGAELEEDLVNKIFAEFCCGK 458


>gi|90194112|gb|ABD92617.1| ThdF [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 434

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 152/434 (35%), Positives = 239/434 (55%), Gaps = 29/434 (6%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
             + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTG
Sbjct: 6   GGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTG 64

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++ADLI +
Sbjct: 65  EDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194
            +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LN
Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI+   N +     QG    I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTT
Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTT 240

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL+ +   +   
Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAE 300

Query: 315 SF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINK 357
           +F           P+NI    I  K DL       +E D      +S+ T  G++ L   
Sbjct: 301 AFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLREH 360

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVS 415
           +K  +  +         + +RHL  L     +LE     L +   G +++AE LR+   +
Sbjct: 361 LKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNA 418

Query: 416 LGKITGCVDVEQLL 429
           L +ITG    + LL
Sbjct: 419 LSEITGQFTSDDLL 432


>gi|94501615|ref|ZP_01308132.1| tRNA modification GTPase [Oceanobacter sp. RED65]
 gi|94426298|gb|EAT11289.1| tRNA modification GTPase [Oceanobacter sp. RED65]
          Length = 455

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 160/462 (34%), Positives = 252/462 (54%), Gaps = 29/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI A++T      + I+R+SG     + + I   + P  R A    F   +  +
Sbjct: 1   MQLNTDTIAAIATPPGRGGVGIVRVSGKKAKAIAQQILGFE-PKVRFAHYCPFKDENDEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL + F  P SFTGED  E   HGG  +++ +L+ +  +   R A PGEFS RAF N
Sbjct: 60  LDEGLALFFEGPNSFTGEDVLELQGHGGPVILDFLLQRVLAL-GARAARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI S +E   R ++  + G  S    + +D L ++R ++EA +DF E
Sbjct: 119 DKMDLTQAEAIADLIDSASEQAARCAVRSLQGAFSQRVKELVDALINLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  +V  D+  + + +     +   G I+R G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKVEADLHQVMDALKQVQQEANQGSILREGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVT I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GRDTAIVTHIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAPDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEISFPKNI--DFI----------FIGTKSDLYSTYT--EEYDH----- 341
            +LL+ + +++ + + PK+I  +F+           I  K DL +     +E        
Sbjct: 298 RVLLMVD-STETDATDPKSIWPEFVDKLPHPERITVIRNKVDLTNEKAGMDEATQNSPIV 356

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            +++  G+G+ EL   +K+I+          I + +RH+  L+Q   +L+  S  ++  G
Sbjct: 357 RLAAKQGDGVTELREHLKTIMGYSATSEGGFI-ARRRHIEALNQADTFLQ--SGRDQLLG 413

Query: 402 L---DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +++AE+LR+A  +L +ITG    + LL  IF  FCIGK
Sbjct: 414 AAAGELLAEDLRMAQNALNEITGEFSSDDLLGKIFGSFCIGK 455


>gi|72080548|ref|YP_287606.1| tRNA modification GTPase TrmE [Mycoplasma hyopneumoniae 7448]
 gi|123645152|sp|Q4A8F6|MNME_MYCH7 RecName: Full=tRNA modification GTPase mnmE
 gi|71913672|gb|AAZ53583.1| tRNA modification GTPase ThdF/TrmE [Mycoplasma hyopneumoniae 7448]
          Length = 442

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 166/447 (37%), Positives = 255/447 (57%), Gaps = 20/447 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGRI 60
           +TI A+++G +  AISIIR+SGP+ F++ E  F+ K  K      S+   FG    D + 
Sbjct: 4   DTICAIASGQINQAISIIRISGPNAFKIMEKIFLGKVGK------SMEITFGWIHDDNQK 57

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L++ F   ++F GED+ E + HGG+   N ILE + K    RLANPGEFS RAF N
Sbjct: 58  IDQVLVLWFAGNKNFVGEDTVEINAHGGVLNTNLILELILKTKLARLANPGEFSLRAFLN 117

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL++A+++ DLI +E ++Q + ++    G+ S+     I+K+  I   IE ++D+ E
Sbjct: 118 GKIDLVKAQAINDLIHAEVKVQHQAALNQFLGKSSNFIKNLIEKIEEIIGIIEVNIDYPE 177

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  +S  +L  I  L  D    I       +I  G K  ++G  N+GKSSL N L 
Sbjct: 178 YDDVEILTSDVLLPKINQLLADFDQLIKIANNSRLIYQGIKTCLVGAPNSGKSSLLNILI 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AI+++IPGTTRDV+  +  L+G L K+ DTAGIR+T + +E+ GI++++  ++ AD
Sbjct: 238 NENKAIISEIPGTTRDVVEGNFVLDGLLFKLFDTAGIRKTTEKIEQIGIEKSYESIKKAD 297

Query: 301 LILLLKEINSK-------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           LIL + + + K       K  + P  + ++ I  KSDL     E  D ++ S   + +E 
Sbjct: 298 LILHIIDASEKNRQNLDLKAKARPDQV-YLKIYNKSDLLENQEEFKDEILISAKYQKIEN 356

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L+ KIKSI +   K   F   S +     L + +  L+  +  E   G +I   +LR+A 
Sbjct: 357 LLEKIKSIFAFLGKNKEFVANSFQISQIELGK-LAILDAKTSLESGFGPEIAIVDLRIAW 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L  I G VD E LLD IFSKFC+GK
Sbjct: 416 KELKTIFGRVDDENLLDSIFSKFCLGK 442


>gi|239828707|ref|YP_002951331.1| tRNA modification GTPase TrmE [Geobacillus sp. WCH70]
 gi|239809000|gb|ACS26065.1| tRNA modification GTPase TrmE [Geobacillus sp. WCH70]
          Length = 461

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 156/462 (33%), Positives = 255/462 (55%), Gaps = 27/462 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLD- 57
           E +TI A+ST     AI+I+RLSG     + + I      K+ K  P   ++ Y   +D 
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDEAIAIADRIFQSPSGKRLKDVPSH-TIHYGHIVDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+ +++ ++ V  +P++FT ED  E + HGG+  VN +L+ L      RLA PGEF++
Sbjct: 61  KSGQTVEEVMVSVMRAPKTFTREDVVEINCHGGLVSVNRVLQ-LVLTNGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    ++++ M G LS L  +    +    + +E +
Sbjct: 120 RAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETLAHVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  +   ++    +++  I   +   + G+I+R G   VI+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEMTPHLLMEKAQYVREQIEKLLQTAQQGKILREGLATVIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+D+VE+ G++R+   
Sbjct: 240 LNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDVVERIGVERSRQM 299

Query: 296 VENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDH 341
           ++ ADLILL+   +       +K     K +DFI I  K+DL             +    
Sbjct: 300 LKEADLILLVLNYHEPLTEEDEKLFEMVKGMDFIVIVNKTDLPKNIDMDRVKQLADGRPI 359

Query: 342 LISSFTGE-GLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398
           + +S   E G+E+L   I  +  S   +    +  S+ RH+  L Q  + +E A S  E 
Sbjct: 360 ITTSLLQEKGIEDLETAISEMFFSGSVEAGDLTYVSNSRHIALLHQAKKAIEDAISGIES 419

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L  A   LG+I G    E L+D +FS+FC+GK
Sbjct: 420 GMPVDLVQIDLTKAWELLGEIIGDTVHESLIDQLFSQFCLGK 461


>gi|58428851|gb|AAW77888.1| thiophene and furan oxidation protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 462

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 241/449 (53%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +   +   PR A    F    G +
Sbjct: 17  MSSSTSTIVAIASAAGTGGVGIVRLSGPQSRQIAVQLGVARLQ-PRHAHYARFRDAQGAV 75

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 76  IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 134

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++AD+I++      R +   + G  S         LT +R  +EA +DF++
Sbjct: 135 GKLDLAQAEAIADVIAAGDLRAARAARRALDGVFSRRVDAVAHTLTRLRIHVEAAIDFAD 194

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  +      +V + +   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 195 EP-LDTLGGNQVRDGLTQARTLLAQLLRDAERGRTLRDGLHAVLIGPPNAGKSSLLNALA 253

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E AD
Sbjct: 254 GSERAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 313

Query: 301 LILLLKEINSKK--EISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +    +    ID +    +I  K DL S     +     +S+ TG+GLE
Sbjct: 314 LALVVLDARDPQAARAAIGDAIDAVPRQLWIHNKCDLLSDAAPLDVNAIAVSAVTGQGLE 373

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++ + L +  + +     +  RH+  L +  R+++ A L      L++ AE LRL
Sbjct: 374 QLHIRLRELALGDGVESVDGEFSARTRHVEALRRAERHVDAADLELGFEQLELAAEELRL 433

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 434 AHEALGEITGKISADDLLGKIFSSFCIGK 462


>gi|148555754|ref|YP_001263336.1| tRNA modification GTPase TrmE [Sphingomonas wittichii RW1]
 gi|205415807|sp|A5VA82|MNME_SPHWW RecName: Full=tRNA modification GTPase mnmE
 gi|148500944|gb|ABQ69198.1| tRNA modification GTPase trmE [Sphingomonas wittichii RW1]
          Length = 440

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 165/446 (36%), Positives = 254/446 (56%), Gaps = 32/446 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYFFGLDG-RILDK 63
           +TIFA+S+GA P+ ++++R+SGP +   +      + +P  R+ASLR     DG  +LD+
Sbjct: 16  DTIFALSSGAPPAGVAVVRISGPMAGVAIDRLTGSRPRPAARRASLRALTNPDGGALLDR 75

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            LL+  P P + TGED AE H+HGG AV   +L  L ++P LR A  GEF+RRAFE G+I
Sbjct: 76  ALLLWLPGPGTATGEDMAELHLHGGRAVTAAVLAALGRLPGLRPATAGEFTRRAFETGRI 135

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL EAE+LADL+++ETE QRR +M    G LS     W  ++  + + +EA LDFS+EED
Sbjct: 136 DLNEAEALADLLAAETEAQRRNAMLLAGGALSRALEDWQHRVLSLAARLEAQLDFSDEED 195

Query: 184 V----QNFSSKEVLNDILFLKNDISSHISQGKLG-EIIRNGYKIVILGHSNAGKSSLFNA 238
           V      F+++    D   ++        +G+L  E +R+G ++V+ G  NAGKS+L NA
Sbjct: 196 VAPLDPGFAAELAALDAEVVR-------WRGRLPVERLRDGVRVVLAGPPNAGKSTLLNA 248

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVE 297
           LA ++ AIVT I GTTRD++   + L G    ++DTAG+ E T D VE  GI R    + 
Sbjct: 249 LAGREAAIVTPIAGTTRDLIEAPVALGGIPFLLTDTAGLHEGTGDAVEAIGIDRAGQAIA 308

Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            AD++L L +       S       + IG ++D  +  +  +D L+S+ +G G+++L+  
Sbjct: 309 AADIVLWLGDPGCAPAGS-------VRIGAQADRRTHDSAAHDLLVSARSGTGMDDLV-- 359

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTV---RYLEMASLNEKDCGLDIIAENLRLASV 414
             ++L ++   L   +P          Q     R  E  +L  ++    ++AE LRLA  
Sbjct: 360 --ALLLDRAAGL---LPGEGEAALSARQRAALDRLGEALALAREEGDPILVAEGLRLARA 414

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +TG    E +LD +F +FCIGK
Sbjct: 415 AIDALTGRAGTEDMLDGLFGRFCIGK 440


>gi|290998015|ref|XP_002681576.1| mitochondrial tRNA modification GTPase [Naegleria gruberi]
 gi|284095201|gb|EFC48832.1| mitochondrial tRNA modification GTPase [Naegleria gruberi]
          Length = 609

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 169/511 (33%), Positives = 274/511 (53%), Gaps = 87/511 (17%)

Query: 6   ETIFAVSTGALPS-AISIIRLSGPSCFQVCEFICKKKKPFPRKASLR--YFFGLDGR--- 59
           +TI+A+++G   S A+S+IR+SG     V   + K  K  P K   R  Y+  L      
Sbjct: 110 DTIYAMASGFTSSCAVSVIRVSGAKAMNV---VTKMTKLNPEKIESRKAYYCSLHDPNNI 166

Query: 60  --ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-AKMPNLRLANPGEFSRR 116
              +DK LL+ F  P SF+GED  E H HG  AVV+ +++ L +++   R A+PGEF++R
Sbjct: 167 NIPIDKVLLLYFKGPNSFSGEDIIEIHCHGSKAVVSQLMKALGSEIVGYRPADPGEFTKR 226

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF N K+DL E E L+DL+ ++TE QR  +++ ++GELS +   W  ++ H  + + A +
Sbjct: 227 AFLNRKMDLTEVEGLSDLLHAQTEHQRIQALKQINGELSHIVTNWKREMLHCVAHVTAFI 286

Query: 177 DFSEEEDVQN--FSSKEVLNDILFLKNDISSH--ISQGKLGEIIR--NGYKIVILGHSNA 230
           DF ++  ++      + ++  +  L +++  +  IS+ +LGE +R  NG +  +LG  NA
Sbjct: 287 DFGDDNGLEESVVYRERIMPSVKKLASELEYYLEISKNRLGERLREGNGIRCALLGAPNA 346

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD-------- 282
           GKSSL N LA+KD+AIV+D  GTTRDV+ + L+L+G+ V ++DTAG+R+  +        
Sbjct: 347 GKSSLLNILAEKDIAIVSDQAGTTRDVVEVQLNLKGWPVTVADTAGLRDQKNDISSETEL 406

Query: 283 ----IVEKEGIKRTFLEVENADLILL---------------------LKEINSK------ 311
               ++E EG+KR   + + AD+IL+                     L E N +      
Sbjct: 407 GKHYLIEIEGMKRAIQKAKEADIILIVIDSSDSLASANQMLDSCLERLSENNHQILEQKK 466

Query: 312 -----KEISFPKNIDFIF-IGTKSDL-YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                 +I    N+DFI  I T S     T+       +S  T EG+++LI +I + + N
Sbjct: 467 IFAIFNKIDSRDNVDFIGPINTASGKDIPTFA------VSCITKEGVDKLIERIGTTVEN 520

Query: 365 KF---------KKLPFSIPSH------KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            F         K +      H      +RH    ++T+ +L  A  + K   +++ AE++
Sbjct: 521 IFTGNDEQFFTKDVGSQQAEHALLITRERHRISFTKTLLFLNKALEDNKQ--IELAAEHI 578

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R A  SL ++TG VD EQ+LD++F +FCIGK
Sbjct: 579 RQAHKSLCEVTGDVDFEQILDVVFKEFCIGK 609


>gi|325280484|ref|YP_004253026.1| tRNA modification GTPase mnmE [Odoribacter splanchnicus DSM 20712]
 gi|324312293|gb|ADY32846.1| tRNA modification GTPase mnmE [Odoribacter splanchnicus DSM 20712]
          Length = 464

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 166/470 (35%), Positives = 258/470 (54%), Gaps = 45/470 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK---KKPFPRKASLRYFFGLDGRILD 62
           E I AVST     AI+++R+SG  C  + + I +    KK    KA+  +F    GRIL+
Sbjct: 5   EVICAVSTAPGIGAIAVLRMSGTGCIALTDRIFESPSGKKLTGAKANTVHF----GRILE 60

Query: 63  KGLLI------VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +G L+      +F +P SFTGE+S E   HG + +   +L+ L      RLA PGEF++R
Sbjct: 61  EGCLLDEVLVTIFHAPHSFTGEESVEIACHGSLYIQQRLLQLLVNQ-GARLATPGEFTQR 119

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGK+DL +AE++ADLI+S +    R++++ M G  S+   +   +L HI S +E +L
Sbjct: 120 AFLNGKMDLSQAEAVADLIASSSAASHRMALKQMKGGFSAELMKLRAELLHITSLLELEL 179

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSL 235
           DFSEE DV+ F+ +  L  I    +++ + + +   LG +I+NG  + I+G++N GKS+L
Sbjct: 180 DFSEE-DVE-FADRSELRRIAGNIDELLTRLCRSFSLGNVIKNGVPVAIVGNTNVGKSTL 237

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL ++D AIV+DI GTTRDV+   ++L G   +  DTAGIR T D VE  GI+RTF +
Sbjct: 238 LNALLREDRAIVSDIAGTTRDVIEDTINLNGITFRFIDTAGIRATSDEVENIGIERTFAK 297

Query: 296 VENADLILLLKEINSKKEISFPK-----------NIDFIFIGTKSDLYSTYTEEYDHL-- 342
           +  A ++LLL ++N   E SF +           +   I +  K+D         + +  
Sbjct: 298 IGQASVVLLLTDLNRGVE-SFEEYYHQVKSRLTSDAKLIIVLNKTDQVEDLLTPQETIRL 356

Query: 343 ---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
                    IS+ TG  L+ LI ++   ++         I S+ RH   L      +E  
Sbjct: 357 FTSGEEIIPISARTGANLDRLIQELTRTVNLNTLNTSDVIVSNVRHYEALRNARTAIE-- 414

Query: 394 SLNEK-DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +NE  + GL  + I++++R     LG+ITG +  +++L  IF  FCIGK
Sbjct: 415 RVNEGLESGLSGEFISQDIRECLHYLGEITGEITTDEVLGNIFKNFCIGK 464


>gi|78050039|ref|YP_366214.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|123583683|sp|Q3BLZ9|MNME_XANC5 RecName: Full=tRNA modification GTPase mnmE
 gi|78038469|emb|CAJ26214.1| tRNA modification GTPase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 446

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 241/449 (53%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSG    Q+   +   +   PR A    F    G +
Sbjct: 1   MSSSASTIVAIASAAGIGGVGIVRLSGAQSVQIAAQLGIARMQ-PRHAHYARFRDGQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       D LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSRRVDAVADTLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  +      ++ + +   +N ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 EP-LDTLGGNQLRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297

Query: 301 LILLLKEINSKKEI--SFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +    +    ID +    +I  K DL       +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDPQAARDAIGDAIDAVPRQLWIHNKCDLLGNAVSLDANAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++++ L +    +     +  RH+  L +  ++++ A L      L++ AE LRL
Sbjct: 358 QLHIRLRALALGDGVDSVEGEFSARTRHVQALRRAEQHVDAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446


>gi|119382760|ref|YP_913816.1| tRNA modification GTPase TrmE [Paracoccus denitrificans PD1222]
 gi|205415788|sp|A1AXX6|MNME_PARDP RecName: Full=tRNA modification GTPase mnmE
 gi|119372527|gb|ABL68120.1| tRNA modification GTPase trmE [Paracoccus denitrificans PD1222]
          Length = 419

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 162/435 (37%), Positives = 238/435 (54%), Gaps = 17/435 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA +T      +S++RLSGP      E +       PR A+LR     D  ++D+ L
Sbjct: 2   DTIFAEATPPGRGGVSVVRLSGPKAHATLESLAGPVAT-PRMAALRALRDGDD-LIDRAL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F    SFTGE+ AE H+HG   + + + + L     LR A  GEF++RAF NG+IDL
Sbjct: 60  VIWFAEGHSFTGEEVAELHLHGAPVIASRLSQALLAR-GLRRAEAGEFTKRAFLNGRIDL 118

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE LADL+S+ETE QR+L+M    GEL     +   KL    + IEA +DF++EE V 
Sbjct: 119 AEAEGLADLLSAETEAQRKLAMRATEGELGRKADELRSKLIRAGALIEASIDFADEE-VP 177

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +   +E L+ I  +++DI   ++     E +R GY++ I+G  NAGKS+L N + ++++A
Sbjct: 178 DEVPEEALDLIKAVRSDIQGMLASYPATERLRQGYEVAIIGPPNAGKSTLLNRIGQREIA 237

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           +V++I GTTRD+L +  DL G  V   DTAG+RE+ D VE  G+ R       ADL + L
Sbjct: 238 LVSEIAGTTRDILELHTDLRGLPVTFLDTAGLRESSDPVEAMGVARAVQRAAEADLRIHL 297

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                 +E      +  I + +K+DL     EE    IS  TGEG+ EL++ +   L  +
Sbjct: 298 SVDGVPEETLV---LGDIIVRSKADL--GRGEET--AISGLTGEGVAELLDLVYDRL--R 348

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425
            +     +  HKR    L + V  L +    +     + +AE LR A+ +L  + G V  
Sbjct: 349 VRAADSGLVGHKRQAEALQRAVAALAI----DDSLAPEFLAEALRQAAQALAMMVGRVGA 404

Query: 426 EQLLDIIFSKFCIGK 440
           E  LD IFS FCIGK
Sbjct: 405 EDYLDEIFSSFCIGK 419


>gi|25009497|sp|Q8PEH9|MNME_XANAC RecName: Full=tRNA modification GTPase mnmE
 gi|21110816|gb|AAM39200.1| thiophene and furan oxidation protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 448

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 242/443 (54%), Gaps = 14/443 (3%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A+++ A    + I+RLSGP   Q+   +   +   PR A    F    G ++D G+ +
Sbjct: 10  IVAIASAAGIGGVGIVRLSGPQSVQIAAHLGIARMQ-PRHAHYARFRDGHGAVIDDGIAL 68

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127
            F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF NGK+DL +
Sbjct: 69  WFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLNGKLDLAQ 127

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           AE++ADLI++      R +   + G  S       + LT +R  +EA +DF++E  +   
Sbjct: 128 AEAIADLIAAGDLRAARAARRALDGVFSQRVDALAETLTRLRIHVEAAIDFADEP-LDTL 186

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
              +V + +   +N ++  +   + G  +R+G   V++G  NAGKSSL NALA  D AIV
Sbjct: 187 GGNQVRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALAGSDRAIV 246

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-- 305
           TD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E ADL L++  
Sbjct: 247 TDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERADLALVVLD 306

Query: 306 -KEINSKKEISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLEELINKI 358
            +++ + ++ +    ID +    +I  K DL       +     +S+ TG+GLE+L  ++
Sbjct: 307 ARDLQAARD-AIGDAIDTVPRQLWIHNKCDLLGNAASLDANAIAVSAVTGQGLEQLHIRL 365

Query: 359 KSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           +++ L +    +     +  RH+  L +  ++ + A L      L++ AE LRLA  +LG
Sbjct: 366 RALALGDGVDSVDGEFSARTRHVQALRRAEQHADAADLELGFEQLELAAEELRLAHEALG 425

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           +ITG +  + LL  IFS FCIGK
Sbjct: 426 EITGKLSADDLLGKIFSSFCIGK 448


>gi|294085212|ref|YP_003551972.1| tRNA modification GTPase TrmE [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664787|gb|ADE39888.1| tRNA modification GTPase TrmE [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 458

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 155/446 (34%), Positives = 235/446 (52%), Gaps = 17/446 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGLDGRILD 62
           +TIFA++T    SAI+I+R+SG       +     C K   F    ++R     DG+ +D
Sbjct: 19  DTIFALATPPGRSAIAIVRISGKKAAYAADAFDVRCPKMGRF----AVRRLKNADGQPID 74

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LL+   +P S TGED  E H HG  AV   IL+ LA++   R A PGEF+RRAF N K
Sbjct: 75  EVLLLYMQAPRSPTGEDVLEIHCHGSQAVQTMILDRLAQIAGFRPALPGEFTRRAFGNDK 134

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
            DL   E LADLI +ET  Q   +   + G L      W + L  +   +EA +DF+ +E
Sbjct: 135 FDLSGVEGLADLIDAETPAQLHQAWAQLDGALRKPVTAWRETLISLAGQLEALIDFA-DE 193

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+       +      L ++I++ ++  K GE+IR+G K+ +LG  NAGKS+  NA++ +
Sbjct: 194 DLPASVEAALRTSTATLISEIAAIMADNKAGEVIRDGVKVALLGSVNAGKSTALNAISGR 253

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D  I +   GTTRD++ + +DL G  V   DTAG+R+    +E EGI+R      +AD  
Sbjct: 254 DAVITSAEAGTTRDIVAVKMDLGGVPVTFMDTAGLRDGAGAIEAEGIRRARQAGRDADFG 313

Query: 303 LLLKEINSKK------EISFPKNIDFIFIGTKSD--LYSTYTEEYDHLISSFTGEGLEEL 354
           L++ + +  K      EIS       + +  K D  L  +  E   HL S    + +E L
Sbjct: 314 LIILDGSDPKWPDHLAEISDLTGGQHLIVLNKCDLGLVGSVPEGALHL-SLRDHKDVEVL 372

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
           I  I   ++   +    +I +  RH   L   ++ LE    ++ +   ++ AE+ R+A+ 
Sbjct: 373 IAAITKAIAPLNQDGQSAIITRARHRDALMGAMQSLERGLTHDFNVNPELAAEDFRMAAT 432

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LG+ITG +DVE LL  IFS FCIGK
Sbjct: 433 ALGRITGKIDVEDLLGSIFSSFCIGK 458


>gi|90194078|gb|ABD92600.1| ThdF [Phocoenobacter uteri]
          Length = 436

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 152/435 (34%), Positives = 242/435 (55%), Gaps = 25/435 (5%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SGP    V + +  K    PR A+   F  +DG  +D+G+ + F +P SFTGE
Sbjct: 7   GVGILRISGPLAETVAQEVLGKTLK-PRMANYLPFKDIDGSTIDQGIALFFKAPNSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ + ++  LR+A  GEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQIILDILLKRILQVKGLRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++ N +  
Sbjct: 126 SEQAARSALKSLQGEFSNKIHQLVDDVIYLRTYVEASIDFPDEE-IDFLADGKIENKLNQ 184

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +   + +   + K G IIR G K+VI G  NAGKSSL NALA +D AIVT+I GTTRDVL
Sbjct: 185 IIASLDNVRKEAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTNIAGTTRDVL 244

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL--------KEINS 310
              + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +LL+        + I +
Sbjct: 245 REHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWGEIEQADHVLLMIDSTESSTENIQT 304

Query: 311 KKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKS 360
           + +      P+NI    I  K DL S   E ++ L       +S+ T  G+E L   +K 
Sbjct: 305 EWQDFLTRLPENIPVTVIRNKVDL-SGEKEGFEKLNNFDLIRLSAQTKVGVELLREHLKQ 363

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGK 418
            +  +         + +RHL  L +   +L      L E   G +++AE LR+   +L +
Sbjct: 364 SMGYQ-SSTEGGFIARRRHLVALEKAAEHLANGHTQLTEFYAG-ELLAEELRMTQNALSE 421

Query: 419 ITGCVDVEQLLDIIF 433
           ITG    + LL  IF
Sbjct: 422 ITGEFTSDDLLGNIF 436


>gi|161723129|ref|YP_443727.2| tRNA modification GTPase TrmE [Burkholderia thailandensis E264]
 gi|167620891|ref|ZP_02389522.1| tRNA modification GTPase TrmE [Burkholderia thailandensis Bt4]
 gi|205829163|sp|Q2STM2|MNME_BURTA RecName: Full=tRNA modification GTPase mnmE
          Length = 467

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 158/467 (33%), Positives = 239/467 (51%), Gaps = 34/467 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           + + I A++T +    I ++R+S    G +            +  PR AS   F    G 
Sbjct: 5   DSDPIVAIATASGRGGIGVVRISLGRAGEAAALALSDALCGARLTPRHASYVPFLDGAGE 64

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRR 116
            LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+RR
Sbjct: 65  PLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEFTRR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +EA L
Sbjct: 125 AFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVEATL 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL 
Sbjct: 185 DFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLL 243

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+ E+
Sbjct: 244 NALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGEI 303

Query: 297 ENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDL---------YSTYTEEYD 340
           E AD++L L +  S            FP  +  + +  K+DL           +  E  D
Sbjct: 304 ERADVVLHLLDARSGLGPDDEAIAARFPAGVPVVRVLNKTDLTEAPASVARVGSGAERAD 363

Query: 341 HL---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRYLEMA 393
                +S+  G+G++ L  ++  I   +       + + +RHL  L    +   R  E A
Sbjct: 364 LCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHVARAAEHA 422

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             N +   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 423 DQNAQ--ALDLFAEELRLAQEQLNSITGEFSSDDLLGVIFSRFCIGK 467


>gi|312136220|ref|YP_004003558.1| tRNA modification gtpase trme [Caldicellulosiruptor owensensis OL]
 gi|311776271|gb|ADQ05758.1| tRNA modification GTPase TrmE [Caldicellulosiruptor owensensis OL]
          Length = 455

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 252/459 (54%), Gaps = 27/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFP-RKASLRYFFGLD 57
           E +TI A+ST      I I+R+SG   + V   + K +K       P R A+L   +  D
Sbjct: 2   EFDTIVAISTPVGTGGIGIVRISGKDAYDVAGKLVKSRKYKSIHDIPVRYAALVDVYDGD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +LI F SP S+TGED  E   HGGI V+  ILE   K    R A PGEF++RA
Sbjct: 62  -EFVDEAILIKFRSPHSYTGEDIVEIQSHGGIVVLKRILEAAIK-NGARHAMPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+S+T + ++ + + + G LS    +    L ++ + IEA +D
Sbjct: 120 FLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNLVATIEASID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE E V   S  E+L+ I      I   I   + G+ I++G   VI+G  N GKSSL N
Sbjct: 180 FSEHE-VDEVSHDEILSTIDGALAKIEKLIKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K++ AIVTDIPGTTRDV+   LD+EG  + ++DTAG+R T+D+VEK G++RT   +E
Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAGVRRTEDVVEKIGVERTLKSIE 298

Query: 298 NADLILLLKE--------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
            ADL+L + E              I  K+ +     ID     ++ D+   + +E    I
Sbjct: 299 RADLVLFMVESSGILQEDLEIFETIKDKRFVVLVNKIDREVKVSQDDIKRVFGKE-GIFI 357

Query: 344 SSFTGEGLEELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           S    + L EL+ K   + +LS   + +   + ++ RH   L ++  +L  A  N     
Sbjct: 358 SVELDKNL-ELVEKAIAREVLSQNIEAIDSILITNLRHKELLLKSKEFLLSAKTNIFSVP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LDI++ +++ A  +L +ITG    E ++D IFS FCIGK
Sbjct: 417 LDILSIDIKNALENLYQITGKNVTEDMVDRIFSMFCIGK 455


>gi|222530701|ref|YP_002574583.1| tRNA modification GTPase TrmE [Caldicellulosiruptor bescii DSM
           6725]
 gi|222457548|gb|ACM61810.1| tRNA modification GTPase TrmE [Caldicellulosiruptor bescii DSM
           6725]
          Length = 455

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 171/459 (37%), Positives = 252/459 (54%), Gaps = 27/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFP-RKASLRYFFGLD 57
           E +TI A+ST      I I+R+SG + F + + + + +K       P R A+L   +  D
Sbjct: 2   EFDTIVAISTPIGTGGIGIVRISGKNAFDIAQKLIRSRKYKTVKDIPTRYAALVDVYDGD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +LI F SP S+TGED  E   HGG+ V+  ILE   K    R A PGEF++RA
Sbjct: 62  -EFVDEAILIKFKSPNSYTGEDVVEIQSHGGMVVLKRILEAAIK-SGARHAMPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+S+T + ++ + + + G LS    +    L ++ + IEA +D
Sbjct: 120 FLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNMVASIEASID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE E V   S  E+L  I      I   I   + G+ I++G   VI+G  N GKSSL N
Sbjct: 180 FSEHE-VDEVSKDEILFTIDAALAKIEKLIKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K++ AIVTDIPGTTRDV+   LD+EG  + ++DTAG+R+T+DIVEK G+K+T   +E
Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGVPIILADTAGVRKTEDIVEKIGVKKTLESIE 298

Query: 298 NADLILLLKE----INSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL- 351
            ADL+L + E    +    EI    KN  FI I  K D     ++  D +   F  EG+ 
Sbjct: 299 RADLVLFMVESSGILQEDLEIFEAIKNKRFIVIVNKIDKEVKVSQ--DDIKRIFGKEGIF 356

Query: 352 --------EELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
                    EL+ K     +L+   +     + ++ RH   L +   +L  A  N     
Sbjct: 357 ISVERDKNLELVEKAIANEVLNQNIETHDSVLITNLRHKELLLKAKEFLVSAKENMYAVP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LDI++ +++ A  SL +ITG    E ++D IFS FCIGK
Sbjct: 417 LDILSIDIKNALDSLYQITGKNVTEDMVDRIFSMFCIGK 455


>gi|71893561|ref|YP_279007.1| tRNA modification GTPase TrmE [Mycoplasma hyopneumoniae J]
 gi|123645874|sp|Q4AAC5|MNME_MYCHJ RecName: Full=tRNA modification GTPase mnmE
 gi|71851688|gb|AAZ44296.1| tRNA modification GTPase ThdF/TrmE [Mycoplasma hyopneumoniae J]
          Length = 442

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 167/447 (37%), Positives = 254/447 (56%), Gaps = 20/447 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGL---DGRI 60
           +TI A+++G +  AISIIR+SGP+ F++ E      K F  K   S+   FG    D + 
Sbjct: 4   DTICAIASGQINQAISIIRISGPNAFKIME------KIFLGKVGRSMEITFGWIHDDNQK 57

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L++ F   ++F GED+ E + HGG+   N ILE + K    RLANPGEFS RAF N
Sbjct: 58  IDQVLVLWFAGNKNFVGEDTVEINAHGGVLNTNLILELILKTKLARLANPGEFSLRAFLN 117

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL++A+++ DLI +E ++Q + ++    G+ S+     I+K+  I   IE ++D+ E
Sbjct: 118 GKIDLVKAQAINDLIHAEVKVQHQAALNQFLGKSSNFIKNLIEKIEEIIGIIEVNIDYPE 177

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  +S  +L  I  L  D    I       +I  G K  ++G  N+GKSSL N L 
Sbjct: 178 YDDVEILTSDVLLPRINQLLADFDQLIKIANNSRLIYQGIKTCLVGAPNSGKSSLLNILI 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AI+++IPGTTRDV+  +  L+G L K+ DTAGIR+T + +E+ GI++++  ++ AD
Sbjct: 238 NENKAIISEIPGTTRDVVEGNFVLDGLLFKLFDTAGIRKTTEKIEQIGIEKSYESIKKAD 297

Query: 301 LILLLKEINSK-------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           LIL + + + K       K  + P  I ++ I  KSDL     E  D ++ S   + +E 
Sbjct: 298 LILHIIDASEKNRQNLDLKAKTRPDQI-YLKIYNKSDLLENQEEFKDEILISAKYQKIEN 356

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L+ KIKSI +   K   F   S +     L + +  L+  +  E   G +I   +LR+A 
Sbjct: 357 LLEKIKSIFAFLGKNKEFVANSFQISQIELGK-LAILDAKTSLESGFGPEIAIVDLRIAW 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L  I G VD E LLD IFSKFC+GK
Sbjct: 416 KELKTIFGRVDDENLLDSIFSKFCLGK 442


>gi|254827379|ref|ZP_05232066.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N3-165]
 gi|258599757|gb|EEW13082.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N3-165]
          Length = 457

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 149/459 (32%), Positives = 249/459 (54%), Gaps = 25/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEYDHLISS------- 345
            ILL+  +N  +E++             +++ +  K+DL +    +  H ++        
Sbjct: 301 FILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDIDRVHELAGENPIVST 358

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
                EGLE L   IK++  +        +  S+ RH+  L Q +  L   +   +    
Sbjct: 359 SLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 419 VDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|295402127|ref|ZP_06812086.1| tRNA modification GTPase TrmE [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294975810|gb|EFG51429.1| tRNA modification GTPase TrmE [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 461

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 155/464 (33%), Positives = 259/464 (55%), Gaps = 31/464 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLD- 57
           E +TI A+ST     AI+I+RLSG     + + +      K+ K  P   ++ Y   +D 
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDEAIAIADRVFKSPSGKRLKDVPSH-TIHYGHIVDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+ +++ ++ V  +P++FT ED  E + HGG+  VN +L+ L      RLA PGEF++
Sbjct: 61  NSGQTVEEAMVSVMRAPKTFTREDVVEINCHGGLVSVNRVLQ-LVLTNGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    ++++ M G LS    +    +    + +E +
Sbjct: 120 RAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGHLSKRIRELRQAILETLAHVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D++  +   ++    +++  I   +   + G+I+R G   VI+G  N GKSSL
Sbjct: 180 IDYPEYDDIEEMTPHLLMEKAQYVREQIEKLLQTAQQGKILREGLATVIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   
Sbjct: 240 LNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGVERSRQM 299

Query: 296 VENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
           ++ ADLILL+    + + ++ E  F   K +DFI I  K+DL      + D +     G 
Sbjct: 300 LKEADLILLVLNYHEPLTAEDEKLFDMVKGMDFIVIVNKTDLPQHI--DMDRVKQLAGGR 357

Query: 350 GL-------EELINKIKSILSNKF-----KKLPFSIPSHKRHLYHLSQTVRYLEMA-SLN 396
            +       E+ I  +++ +SN F     +    +  S+ RH+  L Q  + +E A S  
Sbjct: 358 PIITTSLLHEKGIEDLETAISNMFFSGAVEAGDLTYVSNSRHIALLQQAKKAVEDAISGI 417

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E    +D++  +L  A   LG+I G    E L+D +FS+FC+GK
Sbjct: 418 ESGMPVDLVQIDLTRAWELLGEIIGDTVHESLIDQLFSQFCLGK 461


>gi|90194088|gb|ABD92605.1| ThdF [Actinobacillus porcitonsillarum]
          Length = 436

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 150/437 (34%), Positives = 245/437 (56%), Gaps = 29/437 (6%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTGE
Sbjct: 7   GVGILRVSGPLASEVAKAVVGKELK-PRLANYLPFMDTDGTVLDQGIALFFKAPNSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ + ++  +R+A  GEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQVILDLLLKRILEVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S+   + +D + ++R+++EA +DF +EE +   +  ++   LND
Sbjct: 126 SEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLND 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+     +++   + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTTR
Sbjct: 185 II---TQLANVRKEAKQGSILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           DVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL+ + + ++   
Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQADV 301

Query: 316 F-----------PKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTGEGLEELINKI 358
           F           P+NI    I  K DL   S   E+ D      +S+ T  G++ L   +
Sbjct: 302 FKTEWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTLIRLSAQTKVGVDLLREHL 361

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416
           K  +  +         + +RHL  L     +LE     L +   G +++AE LR+   +L
Sbjct: 362 KQSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAG-ELLAEELRMVQNAL 419

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 420 SEITGQFTSDDLLGNIF 436


>gi|167834937|ref|ZP_02461820.1| tRNA modification GTPase TrmE [Burkholderia thailandensis MSMB43]
          Length = 467

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 153/465 (32%), Positives = 239/465 (51%), Gaps = 30/465 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           + ++I A++T +    I ++R+S    G +            +  PR AS   F    G 
Sbjct: 5   DSDSIVAIATASGRGGIGVVRISFGRAGEAAALALSEALCGARLAPRHASYVPFLDGAGE 64

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRR 116
            LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+RR
Sbjct: 65  PLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLLLQRCLDAGRAYGLRLAEPGEFTRR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +EA L
Sbjct: 125 AFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGVFSRDVHVLVDDVIALRMLVEATL 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL 
Sbjct: 185 DFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLL 243

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+ E+
Sbjct: 244 NALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIVDTAGLRETEDEVEKIGIARTWGEI 303

Query: 297 ENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDLY------------STYTE 337
           E AD++L L +  S +          FP  +  + +  K+DL             +   +
Sbjct: 304 ERADVVLHLLDARSGRGPDDEVIAARFPAGVPVVRVLNKTDLTDAPASVARVGGGAACAD 363

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL--SQTVRYLEMASL 395
             +  +S+  G+G++ L  ++  I   +       + + +RHL  L  +Q          
Sbjct: 364 VCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHLARAAGHA 422

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 423 DQNAQALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 467


>gi|15674224|ref|NP_268399.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. lactis
           Il1403]
 gi|14195270|sp|Q9CDH8|MNME_LACLA RecName: Full=tRNA modification GTPase mnmE
 gi|12725311|gb|AAK06340.1|AE006453_4 GTP-binding protein ThdF [Lactococcus lactis subsp. lactis Il1403]
 gi|326407874|gb|ADZ64945.1| tRNA modification GTPase [Lactococcus lactis subsp. lactis CV56]
          Length = 455

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 156/460 (33%), Positives = 259/460 (56%), Gaps = 27/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI+I+RLSG    ++ + + K K    + AS    +G    +
Sbjct: 3   LTQEFDTIAAISTPLGEGAIAIVRLSGTDALKIAQSVYKGKN-LTQVASHTINYGHIFEE 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            R++D+ ++ V  +P++FT ED  E + HGGIAV   IL+ L +    RLA PGEF++RA
Sbjct: 62  KRLVDEVMVSVMRAPKTFTREDIVEINTHGGIAVTQEILQLLLR-NGARLAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ DLI ++T+    ++++ + G LS +      ++    + +E ++D
Sbjct: 121 FLNGRIDLAQAESVMDLIRAKTDKAANIAVKQLDGSLSKMINNIRQEILESLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  +S+ +L      +  + + +S  K G+I+R G K  I+G  N GKSSL N
Sbjct: 181 YPEYDDVETMTSQMLLEKTAHFEQLLENLLSTAKRGKILREGLKTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+T   ++ G  +++ DTAGIRETDD+VE  G++R+   + 
Sbjct: 241 QLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDDLVEAIGVERSKKALA 300

Query: 298 NADLILLL----KEINSK--KEISFPKNIDFIFIGTKSDLY----STYTEEYDHLISSFT 347
            ADL+LL+     E+  K  + +   KN + I +  K+DL     ST        IS+  
Sbjct: 301 EADLVLLVLDASNELTDKDLELLELSKNSNRIVLLNKTDLPEKIDSTQISGDFIRISALK 360

Query: 348 GEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402
            E L  +  KI  I  + + +    ++ S+ RH+  + + ++     +L E + GL    
Sbjct: 361 NENLNAVEEKINQIFFAGEIEAKDATVLSNARHISIVEEALK-----ALKEANSGLALGL 415

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D+I  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 416 PVDLIQVDVTRCWQLLGEITGEAAPDELITQLFSQFCLGK 455


>gi|194367813|ref|YP_002030423.1| tRNA modification GTPase TrmE [Stenotrophomonas maltophilia R551-3]
 gi|194350617|gb|ACF53740.1| tRNA modification GTPase TrmE [Stenotrophomonas maltophilia R551-3]
          Length = 449

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 147/447 (32%), Positives = 241/447 (53%), Gaps = 17/447 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGRILDK 63
           +TI A+++      + ++RLSGP   +          P   PR A        DG ++D 
Sbjct: 8   DTIVAIASAPGAGGVGLLRLSGP---RAAAIANALGAPALRPRHAHYARLRDADGEVIDD 64

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+++ FP+P SFTGE+  E   HG   ++  ++     +   R A PGEFS RAF NGK+
Sbjct: 65  GIVLWFPAPNSFTGEEVVELQGHGSPVLLQQLVARCIAL-GARQARPGEFSERAFLNGKL 123

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI++      R +   + G  S      +++L  +R  +EA +DF++E  
Sbjct: 124 DLAQAEAIADLIAAGDNRAARAARRSLDGVFSRRIDAVVEQLVLLRIHVEAAIDFADEP- 182

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +      +V   +   ++D++      + G  +R+G   V++G  NAGKSSL NALA  +
Sbjct: 183 LDTLGGAQVRRGLKQARSDLALLRRDAERGRRLRDGLHAVLIGPPNAGKSSLLNALAGSE 242

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRD L   + L+G  + + DTAG+R+  D +E+EG++R  +E+E  DL L
Sbjct: 243 RAIVTDIAGTTRDTLRETIRLDGLELTLVDTAGLRDGGDAIEREGMRRAHVEIERTDLAL 302

Query: 304 LLKEIN--SKKEISFPKNIDF----IFIGTKSDLYSTYT--EEYDHL-ISSFTGEGLEEL 354
           ++ +    +  E +    +      ++I  KSDL +     ++ D + +S+ TG GLE+L
Sbjct: 303 IVLDARDPAAGEAALGDAVAAVPHKVYIHNKSDLLTALPALDDPDRVFVSAATGAGLEDL 362

Query: 355 INKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
             +++SI S    +++     +  RH+  + +   + + A        L++ AE LRLA 
Sbjct: 363 HARLRSIASAGAGEQVDGEFSARTRHVDAIERAQEHAQRADGELAHEHLELAAEELRLAH 422

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LG+ITG +  + LL  IFS FCIGK
Sbjct: 423 DALGEITGQMSADDLLGRIFSSFCIGK 449


>gi|167568262|ref|ZP_02361136.1| tRNA modification GTPase TrmE [Burkholderia oklahomensis C6786]
          Length = 467

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 245/468 (52%), Gaps = 36/468 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T +    I ++R+S       +   + + +C  +   PR AS   F    G
Sbjct: 5   DSDPIVAIATASGRGGIGVVRISLGRAAEAAALALSDALCGTRLA-PRHASYVPFLDGAG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 64  EPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGE 302

Query: 296 VENADLILLLKEINSK-----KEIS--FPKNIDFIFIGTKSDLYST------------YT 336
           +E AD++L L +  S+     + I+  FP  +  + +  K+DL                 
Sbjct: 303 IERADVVLHLLDARSRLGADDQAIAARFPAGVPVVRVLNKTDLTDVPASVARGGGGEGGA 362

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRYLEM 392
           E  +  +S+  G+G++ L  ++  I   +       + + +RHL  L    +   R  E 
Sbjct: 363 EVCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHLARAAEH 421

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  N +   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 422 ADQNAQ--ALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 467


>gi|299820854|ref|ZP_07052743.1| tRNA modification GTPase TrmE [Listeria grayi DSM 20601]
 gi|299817875|gb|EFI85110.1| tRNA modification GTPase TrmE [Listeria grayi DSM 20601]
          Length = 457

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 156/458 (34%), Positives = 251/458 (54%), Gaps = 23/458 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   KK   +  S    +G    +G  
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPLAIQIADRIFYAKKRLEKVDSHTIHYGHIKENGET 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +    RLA PGEF++RAF N
Sbjct: 62  IEEVMVSVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLE-KGARLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  + G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVALRQLDGNLSKLIRSLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     +KN +   +   K G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTQLVKNSVEQLLLTAKQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYSTY-TEEYDHL--------ISS 345
            ILL+   N    I         K   F+ +  K+DL S    ++ + L         S 
Sbjct: 301 FILLVLNQNEALTIEDEALFEAAKGHTFVVVLNKTDLPSKIDRKQLEKLANGNAIVETSL 360

Query: 346 FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-- 402
              EG+ +L   I S+    +      +  S+ RH+  L Q +  L+ A +     G+  
Sbjct: 361 LKDEGMRDLEEAINSLFFEGEIDAGDATYISNVRHIALLHQAIEALD-AVVEGVSVGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 420 DIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|323703263|ref|ZP_08114914.1| tRNA modification GTPase TrmE [Desulfotomaculum nigrificans DSM
           574]
 gi|323531728|gb|EGB21616.1| tRNA modification GTPase TrmE [Desulfotomaculum nigrificans DSM
           574]
          Length = 461

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 164/460 (35%), Positives = 253/460 (55%), Gaps = 27/460 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG----LDGR 59
           +TI A++T    ++I +IR+SGP    +    F+ KK K +  K + +  +G     D R
Sbjct: 4   DTIVAIATPLGEASIGVIRISGPDAIAIGRRVFVPKKNKDWYIKDNYKLVYGHVVDPDTR 63

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            +LD+ LL V   P SFT ED  E   HGGI  +  +L+ L      RLA PGEFS+RAF
Sbjct: 64  EVLDEVLLSVMRGPHSFTAEDVVEISCHGGIVPLRRVLQ-LVLNQGARLAEPGEFSKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ D+I ++T+   +++M  + G LSS        +  + + IEA +DF
Sbjct: 123 INGRLDLAQAEAIIDIIRAKTDAGAKVAMSQLDGRLSSEIISLQTDILGLLAKIEAIIDF 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E+ D++  +  E+      +   +++ +     G+I R G + VI+G  N GKSSL NA
Sbjct: 183 PED-DIEEATLDEIAAQCNIMLQKVNTLLDNADTGKIYREGLQTVIIGKPNVGKSSLLNA 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L K+  AIVTDIPGTTRD++   L+++G  +KI DTAG+RETDD+VEK G+ R+   +  
Sbjct: 242 LLKEQRAIVTDIPGTTRDIIEEFLNIQGVPLKIIDTAGLRETDDLVEKLGVARSRQLINQ 301

Query: 299 ADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE---YDHLISSFTGE 349
           ADL+LL+ +  +       K IS  K+   + +  K D+ +          +L  SFT E
Sbjct: 302 ADLVLLVLDATTGITEDDLKIISLVKDKKTLVLINKIDIAANRINSDKIKRYLGDSFTLE 361

Query: 350 -------GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400
                  GL++L   I + +L+ K       I S+ RH   L +  ++L+      K+  
Sbjct: 362 ISAKQEIGLDKLEQAILELVLAGKVTAADNVIISNTRHKQALVRAKQHLQEVQRGIKEFV 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D+I+ +L+ A   LG+ITG    E L+D IF+ FCIGK
Sbjct: 422 PADLISIDLKSAWEILGEITGNNVTEDLIDRIFADFCIGK 461


>gi|294665117|ref|ZP_06730420.1| tRNA modification GTPase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605118|gb|EFF48466.1| tRNA modification GTPase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 446

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 148/449 (32%), Positives = 240/449 (53%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +   +   PR A    F    G +
Sbjct: 1   MSSSTSTIVAIASAAGIGGVGIVRLSGPQSVQIAAHLGIARMR-PRHAHYARFRDGQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P S TGED  E   HG   ++  ++     +   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFNAPHSLTGEDVVELQGHGSPVLLRQLVARCIAL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       + LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSQRVDALAETLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  +      +V + +   +N ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 EP-LDTLGGNQVRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R  +E+E AD
Sbjct: 238 GSERAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARVELERAD 297

Query: 301 LILLLKEINSKKEI--SFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +    +    ID +    +I  K DL       +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDPQAARDAIGDAIDAVPRQLWIHNKCDLLGNAASLDANAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++++ L +    +     +  RH+  L +  ++ + A L      L++ AE LRL
Sbjct: 358 QLHIRLRALALGDGVDSVDGEFSARTRHVEALRRAEQHADAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446


>gi|254414160|ref|ZP_05027927.1| tRNA modification GTPase TrmE [Microcoleus chthonoplastes PCC 7420]
 gi|196178835|gb|EDX73832.1| tRNA modification GTPase TrmE [Microcoleus chthonoplastes PCC 7420]
          Length = 460

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 159/464 (34%), Positives = 251/464 (54%), Gaps = 37/464 (7%)

Query: 4   EKETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL--- 56
           + ETI A++T  +P   ++ I+R+SG +  ++    F    ++ +    + R  +G    
Sbjct: 7   QGETIAAIATAVVPQQGSVGIVRVSGENALEIARQLFHAPGRQLW---QTHRILYGYVRH 63

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               +I+D+ LL++  SP S+T ED  EFH HGGI  V  +L+   ++   RLA PGEF+
Sbjct: 64  PQTQQIVDEALLLIMQSPRSYTREDVVEFHCHGGIMPVQQVLQLCLEL-GARLAQPGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS----SLYGQWIDKLTHIRS 170
            RAF NG++DL +AES+ADL+ S +    + ++ G+ G+L+     L    +D L  I  
Sbjct: 123 LRAFLNGRLDLTQAESIADLVGSRSPAAAQAALAGIQGKLAVPIRQLRATCLDSLAEI-- 180

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
             EA +DF  EED+       ++  +  +  +I   ++    G+++R G  I I+G  N 
Sbjct: 181 --EARIDF--EEDLPPLDEAGIIAQLQQVLTNIKQILATADRGQLLRTGLNIAIVGRPNV 236

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSL NA ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIRET D VEK G++
Sbjct: 237 GKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETVDQVEKIGVE 296

Query: 291 RTFLEVENADLILLLKEINS-----KKEI-SFPKNIDFIFIGTKSDLYS----TYTEEYD 340
           R+    E ADLI+L+ E  +      +EI +  K+   I +  K+DL      +Y +  D
Sbjct: 297 RSRRAAEAADLIVLVIEATAGWSSDDQEIYTQVKHRPLILVINKTDLAPADSVSYPDSID 356

Query: 341 HLISSFT--GEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
            +I++     EG+E L   I +++ +         +  ++R    L+Q    LE      
Sbjct: 357 RVITAAVTKNEGIEALEQGILEAVQTGTLHAADLDLAINQRQAAALTQAKIALEQVQETI 416

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 417 AQQLPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 460


>gi|116874162|ref|YP_850943.1| tRNA modification GTPase TrmE [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123458786|sp|A0AMD2|MNME_LISW6 RecName: Full=tRNA modification GTPase mnmE
 gi|116743040|emb|CAK22164.1| tRNA modification GTPase TrmE [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 457

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 251/459 (54%), Gaps = 25/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   KK      S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKKNLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTYT-------EEYDHLISS 345
            ILL+  +N  +E++             +++ +  K+DL +             + ++S+
Sbjct: 301 FILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINKVRELAGENPIVST 358

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
                EGLE L   IK++  +        +  S+ RH+  L Q +  L   +   +    
Sbjct: 359 SLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNAVTTGIQLGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 419 VDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|83655357|gb|ABC39420.1| tRNA modification GTPase TrmE [Burkholderia thailandensis E264]
          Length = 540

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 158/467 (33%), Positives = 239/467 (51%), Gaps = 34/467 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           + + I A++T +    I ++R+S    G +            +  PR AS   F    G 
Sbjct: 78  DSDPIVAIATASGRGGIGVVRISLGRAGEAAALALSDALCGARLTPRHASYVPFLDGAGE 137

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRR 116
            LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+RR
Sbjct: 138 PLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEFTRR 197

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +EA L
Sbjct: 198 AFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVEATL 257

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL 
Sbjct: 258 DFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLL 316

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+ E+
Sbjct: 317 NALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGEI 376

Query: 297 ENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDL---------YSTYTEEYD 340
           E AD++L L +  S            FP  +  + +  K+DL           +  E  D
Sbjct: 377 ERADVVLHLLDARSGLGPDDEAIAARFPAGVPVVRVLNKTDLTEAPASVARVGSGAERAD 436

Query: 341 HL---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRYLEMA 393
                +S+  G+G++ L  ++  I   +       + + +RHL  L    +   R  E A
Sbjct: 437 LCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHVARAAEHA 495

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             N +   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 496 DQNAQ--ALDLFAEELRLAQEQLNSITGEFSSDDLLGVIFSRFCIGK 540


>gi|50308583|ref|XP_454294.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643429|emb|CAG99381.1| KLLA0E07657p [Kluyveromyces lactis]
          Length = 501

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 159/474 (33%), Positives = 269/474 (56%), Gaps = 50/474 (10%)

Query: 7   TIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL-DKG 64
           T++A+ST +   SAI+IIR+SG     + + +  KK    RK  +R  +      L D+ 
Sbjct: 38  TVYALSTPSNQHSAIAIIRISGTHSKYILKKLSPKKPLRQRKPMIRSLYDPKASTLIDEA 97

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSRRAFEN 120
           L++ FP P +FTGED  E H+HGG A++   L  +  + +    +R+A PGEFSRRAF+N
Sbjct: 98  LVLYFPQPRTFTGEDLVELHLHGGKAIIKAALNSIQGLRDSERDIRMAMPGEFSRRAFQN 157

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DLL+ ES+ ++I S+TE+QR  ++ G   +   ++ +W  ++    + + A +DF E
Sbjct: 158 GKMDLLKLESINNMIHSDTELQRLSALHG--NQTVDIFHEWRQEIIEQIAKLTAIIDFGE 215

Query: 181 EEDVQNFSSKEVLN----DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           + + ++  S  ++N     +L L   ++  + +     ++ +G K+ +LG  N+GKSSL 
Sbjct: 216 DIETEDIDS--IVNGANDKLLQLYKKVTRFMVKLDRMAVLNDGIKLTLLGEPNSGKSSLV 273

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLE 295
           N +++ DVAIV+DIPGTTRD + + +D+ G+   ++DTAGIR+ T D +E +GI R+  +
Sbjct: 274 NEISQDDVAIVSDIPGTTRDSIDVMMDINGFKCILTDTAGIRQGTSDSIEIKGIDRSKKK 333

Query: 296 VENADLILLLKEIN----SKKEISFPK----NIDFIFIGTKSDLYST-----YTEEYD-- 340
              +DL++L+ +++    SK    F K    +   I +  KSDL +        E++D  
Sbjct: 334 SLQSDLVVLVIDVSNPNISKHFEEFIKDNLSDKPLIVVLNKSDLATETQLKYLIEKFDAE 393

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKL-------PFSIPSHKRHLYHLSQTV 387
                 H +S  T  GLE L+      L+  F+++       P ++ +  + +  LS  +
Sbjct: 394 FKALKIHTVSCLTKIGLEPLVKT----LTLSFRRISATENEDPVTVSNRVKEI--LSTDI 447

Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440
            +        K+  + I  E+LR+AS  +GKITG  VD+E++LD++FSKFCIGK
Sbjct: 448 LFGLDQFFQHKNDDILIACESLRIASDGIGKITGDNVDLEEVLDVVFSKFCIGK 501


>gi|167560998|ref|ZP_02353914.1| tRNA modification GTPase TrmE [Burkholderia oklahomensis EO147]
          Length = 467

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 245/468 (52%), Gaps = 36/468 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T +    I ++R+S       +   + + +C  +   PR AS   F    G
Sbjct: 5   DSDPIVAIATASGRGGIGVVRISLGRAAEAAALALSDALCGTRLA-PRHASYVPFLDGAG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 64  EPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHTLVDDVIALRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGE 302

Query: 296 VENADLILLLKEINSK-----KEIS--FPKNIDFIFIGTKSDLYST------------YT 336
           +E AD++L L +  S+     + I+  FP  +  + +  K+DL                 
Sbjct: 303 IERADVVLHLLDARSRLGADDQAIAARFPAGVPVVRVLNKTDLTDVPASVARGGGEEGGA 362

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRYLEM 392
           E  +  +S+  G+G++ L  ++  I   +       + + +RHL  L    +   R  E 
Sbjct: 363 EVCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHLARAAEH 421

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  N +   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 422 ADQNAQ--ALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 467


>gi|123965453|ref|YP_001010534.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9515]
 gi|166234807|sp|A2BUG6|MNME_PROM5 RecName: Full=tRNA modification GTPase mnmE
 gi|123199819|gb|ABM71427.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus str. MIT 9515]
          Length = 461

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 162/456 (35%), Positives = 250/456 (54%), Gaps = 36/456 (7%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRILDKG 64
           A+S G     I++IR++G      C+ I + K  +  + S R F G     L+ + +D+ 
Sbjct: 17  AISLG--KGGIAVIRVTGEEAINSCKNIVETKSKYAWE-SHRVFHGYVKDNLENKYIDEI 73

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-LRLANPGEFSRRAFENGKI 123
           L+ V  SP SFTGED  E H HGG+ VVN +++ L    N +R+ANPGEFS+RAF NGKI
Sbjct: 74  LISVMHSPNSFTGEDVVELHCHGGVIVVNKVMDTLLSNNNKVRIANPGEFSQRAFLNGKI 133

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AES+  LI+++      ++  G+ GE+        + L    S IEA +DF  EED
Sbjct: 134 DLTQAESINQLINAKNLKSAEIAFNGVKGEIKKKIDVIKNDLIEQLSEIEARVDF--EED 191

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
             +F+  +    I  +K  I   I   K G  I NG  I ++G +N GKSSL N L+KK+
Sbjct: 192 FSDFNYHDFSRSIKNIKEKIEILIENTKRGASIHNGISIALIGKTNVGKSSLLNLLSKKE 251

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+IPGTTRD++ ++L ++   +K+ DTAGIR+TD+ +E  GI++TF  ++ +D I+
Sbjct: 252 KAIVTNIPGTTRDMIEVNLTIKDIPIKLVDTAGIRDTDEYIENIGIEKTFEMIQKSDYII 311

Query: 304 LL-----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSF 346
            L           +EI SK     P+      +G K DL  +   +         L+S  
Sbjct: 312 YLYSLEDGFNKDDEEIISK----IPREKLITILGNKKDLIDSKKNDQKTFSSDIVLMSIK 367

Query: 347 TGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404
             EG ++L++KI K   S +F+ +   +  ++R + +L   ++ L +   +       D+
Sbjct: 368 NNEGEKDLVDKIVKKCGSKEFENIDIFL--NERQISNLRDCLKNLNDTDPIIANQLPFDL 425

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +R    +L +ITG    E LL+ IFSKFCIGK
Sbjct: 426 LSIEVRDGIKNLSRITGQELTEDLLNNIFSKFCIGK 461


>gi|293374951|ref|ZP_06621247.1| tRNA modification GTPase TrmE [Turicibacter sanguinis PC909]
 gi|325844341|ref|ZP_08168117.1| tRNA modification GTPase TrmE [Turicibacter sp. HGF1]
 gi|292646428|gb|EFF64442.1| tRNA modification GTPase TrmE [Turicibacter sanguinis PC909]
 gi|325489208|gb|EGC91590.1| tRNA modification GTPase TrmE [Turicibacter sp. HGF1]
          Length = 452

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 165/459 (35%), Positives = 257/459 (55%), Gaps = 32/459 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GRI 60
           ++TI  +ST     AISIIRLSG     +   I + K      + ++ Y F  D    R 
Sbjct: 3   QDTIAGISTAMGEGAISIIRLSGDEALDIANKIFRGKDLKSVASHTINYGFIYDPETDRK 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT ED  E + HGGI V N ILE L  +   RLA PGEF++RAF N
Sbjct: 63  VDEVLVSVMRAPKTFTAEDIVEINCHGGILVTNKILE-LILLAGARLAEPGEFTKRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ D+I +++E    L++ G+ G +S L  +  +++ +I + IE ++D+ E
Sbjct: 122 GRIDLAQAESIMDIIHAKSEQSLSLALNGLDGRVSRLIKEMREEILNILANIEVNIDYPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSH------ISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DV+     E+ NDIL L   I  H      +   K G+I+R+G K VI+G  N GKSS
Sbjct: 182 YDDVE-----EMTNDIL-LPRSIDIHEKMLKLLDTAKTGKILRDGIKTVIIGRPNVGKSS 235

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVT+I GTTRD +   +++ G  + + DTAGIR+T+DIVE  G++++  
Sbjct: 236 LLNQLMREEKAIVTNIAGTTRDTVEGYINIGGLTLNLIDTAGIRDTEDIVEAIGVEKSKK 295

Query: 295 EVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-----I 343
            +  A+L+LL+   N K      + +S   + + I I  K+DL +    E D L      
Sbjct: 296 LINEAELVLLVLNNNEKLTADDRELLSLTNDKNRIIILNKTDLETQI--ERDELPNYIET 353

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    +G+E L N+IK +           +  S+ RH+  L Q +  +  A S  +    
Sbjct: 354 SMVLEKGIEVLENQIKKMFEIGDIGAKDMTYLSNARHIAKLKQAINSINDAISAMQLGML 413

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +++ A  SLG+I G    + LLD +FSKFC+GK
Sbjct: 414 VDMVEIDIKNAWYSLGEIIGEDMGDSLLDELFSKFCLGK 452


>gi|330685267|gb|EGG96928.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU121]
          Length = 459

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 152/459 (33%), Positives = 256/459 (55%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K KKP     S    +G  +D      
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIGDKLYKGKKPLAEVDSHTINYGHIIDPETNET 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF N
Sbjct: 64  VEEVMISVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTHGARMAEPGEYTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 183 YDDVEDATTEFLLQQSKNIKQEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  AD
Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSQAD 302

Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343
           LIL +  +N+ + ++          KN D I I  K+DL +     E   +I        
Sbjct: 303 LILFV--LNNNEALTEDDQTLYDVVKNEDVIVIINKTDLETHLDINEVKEMIGDTPLIQT 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG++EL  +I+ +      +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|330818728|ref|YP_004362433.1| tRNA modification GTPase TrmE [Burkholderia gladioli BSR3]
 gi|327371121|gb|AEA62477.1| tRNA modification GTPase TrmE [Burkholderia gladioli BSR3]
          Length = 468

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 156/468 (33%), Positives = 244/468 (52%), Gaps = 33/468 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLD 57
           ++ + I A++T A    I ++R+S       +   +   +C +    PR AS   F    
Sbjct: 4   NDSDPIVAIATAAGRGGIGVVRVSFGRAGAAAAEALMRAVCGQVLA-PRHASYVPFLDAA 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFS 114
           G  LD+G+ + F +P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+
Sbjct: 63  GAALDRGIALYFTAPNSYTGEHVLELQGHGGPIVLQLVLQRCLDAGREHALRLAEPGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +EA
Sbjct: 123 RRAFLNDKLDLAQAEAVADLIEASTEAAVRSAGRSLDGVFSRDIHALVEDVIGLRMLVEA 182

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSS
Sbjct: 183 TLDFPEEE-IDFLEAADARGKLARIRERLAQVLGDARQGALLREGMSVVLAGQPNVGKSS 241

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+ 
Sbjct: 242 LLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWG 301

Query: 295 EVENADLILLLKEINS-----KKEIS--FPKNIDFIFIGTKSDLY----------STYTE 337
           E+E AD++L L +  +      + I+  FP  +  + +  K+DL           S    
Sbjct: 302 EIERADVVLHLLDAQTGLGTEDRAIAERFPAGVPVVRVFNKTDLSGEAASVTHPGSGAAG 361

Query: 338 EYDHL---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
           E D     +S+  G+G++ L  ++  I   +       + + +RHL  L     +L  A+
Sbjct: 362 EVDLTELRLSAKQGDGIDLLRAELLRIAGWQAGAESVYL-ARERHLVALRAAQEHLAQAA 420

Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 421 DHADQNAQALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 468


>gi|332705667|ref|ZP_08425743.1| tRNA modification GTPase trmE [Lyngbya majuscula 3L]
 gi|332355459|gb|EGJ34923.1| tRNA modification GTPase trmE [Lyngbya majuscula 3L]
          Length = 459

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 158/463 (34%), Positives = 248/463 (53%), Gaps = 32/463 (6%)

Query: 4   EKETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGL--- 56
           E +TI A++T  +P   +I I+RLSG     +   + +      R+A  S R  +G    
Sbjct: 3   ESQTIAAIATAVVPQQGSIGIVRLSGRDAIAIARTLFQAPG---RQAWESHRILYGYVRH 59

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+
Sbjct: 60  PKTQQLVDEALLLIMQAPRSYTREDVVEFHCHGGIMPVQKVLQ-LCLEQGARLAQPGEFT 118

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF NG++DL +AES+ADL+ S +    + ++ G+ G+L++   +       I + IEA
Sbjct: 119 LRAFLNGRLDLTQAESVADLVGSRSPAAVQAALAGLQGKLATPIREARATCLDILAEIEA 178

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF  EED+       ++  +  +  ++S  ++    GE++R G K+VILG  N GKSS
Sbjct: 179 RIDF--EEDLPPLDQGAIVAQLNNILTEVSQLLATADQGELLRTGLKVVILGRPNVGKSS 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NA ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIRET D VEK G++R+  
Sbjct: 237 LLNAWSRCDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETADQVEKIGVERSRS 296

Query: 295 EVENADLILLLKEINS-----KKEI-SFPKNIDFIFIGTKSDLYS-------TYTEEYDH 341
               ADL+LL+ E  +      +EI    +    I +  K+DL S       +Y    + 
Sbjct: 297 AAMAADLVLLVIEATTGWSAGDQEIYQQVQERPVILVINKTDLASDKAESTLSYPNTIER 356

Query: 342 LISSFTG--EGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
           ++ +     +G++ L   I  ++     +     +  ++R    L++    L+       
Sbjct: 357 VVKTAAAYNQGIDALEKAILDAVNRGNLQAADLDLAINQRQAAALTRAKMSLQQVQETIA 416

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           K+  LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 417 KELPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 459


>gi|167582764|ref|ZP_02375638.1| tRNA modification GTPase TrmE [Burkholderia thailandensis TXDOH]
          Length = 467

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 158/467 (33%), Positives = 238/467 (50%), Gaps = 34/467 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           + + I A++T +    I ++R+S    G +            +  PR AS   F    G 
Sbjct: 5   DSDPIVAIATASGRGGIGVVRISLGRAGEAAALALSDALCGARLTPRHASYVPFLDGAGE 64

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRR 116
            LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+RR
Sbjct: 65  PLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEFTRR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +EA L
Sbjct: 125 AFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVEATL 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL 
Sbjct: 185 DFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLL 243

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+ E+
Sbjct: 244 NALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGEI 303

Query: 297 ENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYSTY---------TEEYD 340
           E AD++L L +  S            FP  +  + +  K+DL              E  D
Sbjct: 304 ERADVVLHLLDARSGLGPDDEAIAARFPAGVPVVRVLNKTDLTEAPASVARVGGGAERAD 363

Query: 341 HL---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRYLEMA 393
                +S+  G+G++ L  ++  I   +       + + +RHL  L    +   R  E A
Sbjct: 364 LCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHLARAAEHA 422

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             N +   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 423 DQNAQ--ALDLFAEELRLAQEQLNSITGEFSSDDLLGVIFSRFCIGK 467


>gi|254438770|ref|ZP_05052264.1| GTPase, putative [Octadecabacter antarcticus 307]
 gi|198254216|gb|EDY78530.1| GTPase, putative [Octadecabacter antarcticus 307]
          Length = 396

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 143/386 (37%), Positives = 212/386 (54%), Gaps = 10/386 (2%)

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           DG ++D+   I F    SFTGE   E   HG  AVV+ +L  L  +  LR A PGEF+RR
Sbjct: 19  DGSLIDQAFSISFGPRRSFTGEQVVELQTHGSPAVVSAVLNRLGAL-GLRPAEPGEFTRR 77

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           A +NG +DL + E LADLI +ETE QRR ++    G L  L   W   L    + +EA +
Sbjct: 78  AMDNGVLDLAQVEGLADLIDAETESQRRQAVRVFQGALGDLASGWRTSLVRAAALLEATI 137

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF +E DV      EV   I  +  ++    +  K+ E +R+G+++ ++G  N+GKS+L 
Sbjct: 138 DFVDE-DVPVDVYPEVRTLIHVVSKEVRHEAAGVKVRERVRDGFEVALVGPPNSGKSTLL 196

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N LA ++ AI +DI GTTRDV+ + +DL+G  V I DTAG+RE+DD++E  GI R     
Sbjct: 197 NRLAGREAAITSDIAGTTRDVIEVRMDLDGLPVTILDTAGLRESDDVLEGIGIARGKDRA 256

Query: 297 ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
             AD+ + L +  S   +     +D I+  +K+DL      +    +S  TG G++ L+ 
Sbjct: 257 AAADIRVHLMDNLSSDSVQSDFGLD-IYTKSKADLVIPPARDG---VSGETGYGMDRLLG 312

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK--DCGLDIIAENLRLASV 414
           +I S L  +       + +  RH   L      L+  +L     D  +D+++E+LR+A  
Sbjct: 313 QISSHLREQLAG--AGVATRMRHQRALETAADALDTVTLGLTVVDMPVDLLSEDLRIAIR 370

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           SL  + G VDVE +L  IFS FCIGK
Sbjct: 371 SLDSLIGRVDVENVLGEIFSSFCIGK 396


>gi|94496563|ref|ZP_01303139.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58]
 gi|94423923|gb|EAT08948.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58]
          Length = 405

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 147/422 (34%), Positives = 222/422 (52%), Gaps = 23/422 (5%)

Query: 25  LSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI-LDKGLLIVFPSPESFTGEDSAEF 83
           +SG       E +  +  P PR+ASL       G + LD+ LL+  P P + TGED AEF
Sbjct: 1   MSGALAGTAIEMLAHRM-PAPRQASLALLRDPTGGMPLDRSLLLWLPGPHTVTGEDMAEF 59

Query: 84  HVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143
           H HGG AV++ +   L+ +P LR A PGEF+RRAF++G++DL   E L+DL+++ET+ QR
Sbjct: 60  HCHGGRAVIDAVEAVLSAIPGLRRAQPGEFTRRAFDHGRMDLNAVEGLSDLLAAETQSQR 119

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS-SKEVLNDILFLKND 202
           R ++    G  S     W  +L  + +  EA LDFS+E+DV + S   ++   +  L+ D
Sbjct: 120 RAALSMAEGHFSRRIDDWRARLLALSAMAEAALDFSDEDDVPDASIEDDIAEQLSLLEGD 179

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + + ++     E +R+G ++V+ G  NAGKS+L NAL  +D AIV+ I GTTRD + +  
Sbjct: 180 VRNVLAAPS-AERLRDGIRVVLAGPPNAGKSTLLNALVGRDAAIVSAIAGTTRDRIEVPA 238

Query: 263 DLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID 321
            ++G     +DTAG+R +  D +E  GI R    +E AD+IL L   +     + P+  D
Sbjct: 239 AIDGVAYLFTDTAGLRDDVGDDIEAIGIDRARAALEAADIILWLGAAD-----AMPRP-D 292

Query: 322 FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            I I  +SD  +         +S+ TGE        + ++L+    +    +P    +  
Sbjct: 293 AILIAAQSDRQNNARSGLP--VSALTGE-------NMGALLAALAARAATLLPGEGDYAL 343

Query: 382 HLSQ---TVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
           H  Q    VR  +          L IIAE  RL    L  +TG    E +LD +FS FCI
Sbjct: 344 HRRQRDLVVRLADHLRAARAHHDLLIIAEECRLGRAVLDTLTGQASTEDMLDRLFSGFCI 403

Query: 439 GK 440
           GK
Sbjct: 404 GK 405


>gi|325104167|ref|YP_004273821.1| tRNA modification GTPase trmE [Pedobacter saltans DSM 12145]
 gi|324973015|gb|ADY51999.1| tRNA modification GTPase trmE [Pedobacter saltans DSM 12145]
          Length = 455

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 159/455 (34%), Positives = 256/455 (56%), Gaps = 20/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--DGR- 59
             ++TI A++T     AI +IRLSGP   ++   + K K    ++ S    FG   +G  
Sbjct: 4   QAEDTIVALATPVGAGAIGVIRLSGPDAIKITNKVFKGKD-LEKQDSHTVHFGTIREGDL 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L+ +F +P+S+T E+  E   HG   ++  I++ + +    R A PGEF+ RAF 
Sbjct: 63  IIDEVLVSLFVAPKSYTKENIVEISCHGSSYIIENIIKLMIR-NGARGAKPGEFTLRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG +DL +AE++ADLI+S +E   +L+M+ M G  SS      D+L H  S IE +LDFS
Sbjct: 122 NGGLDLSQAEAVADLIASSSETSHQLAMKQMRGGFSSELKNLRDQLIHFASMIELELDFS 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE DV+  +  ++   IL ++  +   I+    G +++NG  +VI G  N GKS+L NAL
Sbjct: 182 EE-DVEFANRGQLKQLILDIQKVLDKLITSFDQGNVLKNGVPVVIAGKPNVGKSTLLNAL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DI GTTRD +  +++++G + +  DTAGIRET D++E +G++RT  +++ A
Sbjct: 241 LNEERAIVSDIAGTTRDTIEDEINVKGVIFRFIDTAGIRETQDVIEAKGVERTLEKIKQA 300

Query: 300 DLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLYST-YTEEYDHL----ISSF 346
            L++ L +         K+++   K  NI ++ +  K DL S    E Y  L    IS+ 
Sbjct: 301 RLLVYLADPIQDDFAAVKEQLDEVKAYNIPYLLVVNKKDLLSAEQIEAYSQLSPLFISAK 360

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
              G++EL +++  I++         + S+ RH+  L +T   L       +     D +
Sbjct: 361 NNLGVDELKDRLLEIVNLANLNSEDVMVSNIRHVEALQKTHEALVRVLYGIDNPVASDFL 420

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A ++R +   LG+ITG V  + LLD IFSKFCIGK
Sbjct: 421 AMDIRQSLYHLGEITGEVTTDDLLDNIFSKFCIGK 455


>gi|113953182|ref|YP_731887.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9311]
 gi|123327545|sp|Q0I6N5|MNME_SYNS3 RecName: Full=tRNA modification GTPase mnmE
 gi|113880533|gb|ABI45491.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9311]
          Length = 463

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 154/461 (33%), Positives = 251/461 (54%), Gaps = 35/461 (7%)

Query: 7   TIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRYFFG---LDG 58
           +I A++T   P    I++IRLSGPS  +    I       P +    S R  +G     G
Sbjct: 11  SIAAIATAVAPGQGGIAVIRLSGPSAVRAVAAITV----IPGQQVWESHRVLYGHVVAAG 66

Query: 59  RI--LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            +  LD+ L++V  +P SFTGED  E H HGG+  V  +L  + + P +R A PGEFS+R
Sbjct: 67  GVERLDEVLVLVMLAPRSFTGEDVVEIHCHGGVIAVQQVLARVLEQPGVRRALPGEFSQR 126

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           A  NG++DL  AE++ DL+ + ++   +L+M G+ G +        ++L    S +EA +
Sbjct: 127 AVLNGRLDLTRAEAIGDLVGARSQRAAQLAMAGLDGGIQKKMVVLRERLLDQLSELEARV 186

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF  EED+   + + +L ++  ++ ++ + ++ G+ G ++R+G ++ ++G  N GKSSL 
Sbjct: 187 DF--EEDLPPLNGEALLQELQAVRLELLTLVADGERGSVVRHGLRVALVGRPNVGKSSLL 244

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L++++ AIVTD+PGTTRD+L  ++ L+G  + + DTAGIR T + VEK GI R+   +
Sbjct: 245 NLLSRRERAIVTDLPGTTRDLLESEIVLDGVPITLLDTAGIRATSNAVEKLGIARSRDAL 304

Query: 297 ENADLILLLKEI----NSKKEISF---PKNIDFIFIGTKSDLY--------STYTEEYDH 341
            +ADL+LLL ++    +   +  F   P+ +  + +G K+DL         +      D 
Sbjct: 305 ASADLVLLLFDLAQGWSDDDQALFALIPEGVPCLRVGNKADLPLKAEPVAETVAASVADV 364

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            +S+ TG+G + L+  +         + P  +  ++R    L+ T       S      G
Sbjct: 365 RLSAVTGDGEQALVQAVLE-RCGALGEQPLLLALNQRQ-SDLAVTAAEALARSEQVAADG 422

Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L  D    +LR A  SLG+ITG    E +LD IFS+FCIGK
Sbjct: 423 LPWDFWTIDLRQAIRSLGEITGEQLTESVLDRIFSRFCIGK 463


>gi|125625274|ref|YP_001033757.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|205415771|sp|A2RP37|MNME_LACLM RecName: Full=tRNA modification GTPase mnmE
 gi|124494082|emb|CAL99083.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300072084|gb|ADJ61484.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 455

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 156/457 (34%), Positives = 262/457 (57%), Gaps = 21/457 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI+I+RLSG    ++ + + K K    + AS    +G    +
Sbjct: 3   LTQEFDTIAAISTPLGEGAIAIVRLSGTDALKIAQSVYKGKN-LAQVASHTINYGHIFEE 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            R++D+ ++ V  +P++FT ED  E + HGGIAV   IL+ L +    RLA PGEF++RA
Sbjct: 62  ERLVDEVMVSVMRAPKTFTREDIVEINTHGGIAVTQEILQLLLR-NGARLAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ DLI ++T+    ++++ + G LS +      ++    + +E ++D
Sbjct: 121 FLNGRIDLAQAESVMDLIRAKTDKAANIAVKQLDGSLSKMINNIRQEILESLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  +S+ +L      +  + + +S  K G+I+R G K  I+G  N GKSSL N
Sbjct: 181 YPEYDDVETMTSQMLLEKTAHFEQLLENLLSTAKRGKILREGLKTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+T   ++ G  +++ DTAGIRETDD+VE  GI+R+   + 
Sbjct: 241 QLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDDLVEAIGIERSKKALA 300

Query: 298 NADLILLL----KEINSK--KEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSF 346
            ADL+LL+     E+  K  + +   KN + I +  K+DL      +  + ++   IS+ 
Sbjct: 301 EADLVLLVLDASLELTDKDLELLELSKNANRIVLLNKTDLPEKLDINQISGDFIR-ISAL 359

Query: 347 TGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--D 403
             E L  +  KI  I  + + +    ++ S+ RH+  + + ++ L+ A+ N    GL  D
Sbjct: 360 KNENLSAVEEKINQIFFAGEIEAKDATVLSNARHISLVEEALKALKEAN-NGLALGLPVD 418

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 LIQVDVTRCWQLLGEITGEAAPDELITQLFSQFCLGK 455


>gi|239637283|ref|ZP_04678270.1| tRNA modification GTPase TrmE [Staphylococcus warneri L37603]
 gi|239597120|gb|EEQ79630.1| tRNA modification GTPase TrmE [Staphylococcus warneri L37603]
          Length = 459

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 152/459 (33%), Positives = 256/459 (55%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K KKP     S    +G  +D      
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIGDKLYKGKKPLAEVDSHTINYGHIIDPETSET 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF N
Sbjct: 64  VEEVMISVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTHGARMAEPGEYTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 183 YDDVEDATTEFLLQQSKNIKQEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  AD
Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSQAD 302

Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343
           LIL +  +N+ + ++          KN D I I  K+DL +     E   +I        
Sbjct: 303 LILFV--LNNNEALTEDDQTLYDVVKNEDVIVIINKTDLETHLDINEVKAMIGDTPLIQT 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG++EL  +I+ +      +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|222099393|ref|YP_002533961.1| tRNA modification GTPase trmE [Thermotoga neapolitana DSM 4359]
 gi|221571783|gb|ACM22595.1| tRNA modification GTPase trmE [Thermotoga neapolitana DSM 4359]
          Length = 455

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 160/457 (35%), Positives = 255/457 (55%), Gaps = 30/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKG 64
           +TI AV+T     AI+I+RLSGP  + +     K +    PRKA +  +   +G  +D+ 
Sbjct: 7   DTIVAVATPPGKGAIAILRLSGPESWDIVRKHFKTRSNIVPRKA-IHGWIRENGEDIDEV 65

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I + SP S+TGED  E   HGG  VV  +L+        R+A PGEF++RAF NGK+D
Sbjct: 66  VVIFYRSPRSYTGEDMVEVMCHGGPFVVKKLLDVFLS-AGARMAEPGEFTKRAFLNGKMD 124

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE--EE 182
           L  AE++ DLI +++E   +LS++ + G L        ++L ++ + I  +LD+ +  E 
Sbjct: 125 LTSAEAVRDLIEAKSEASLKLSLKNLKGGLRQFVETLREELINVLAEIRVELDYPDDVET 184

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV++  +K     I  +   +   + +   G ++  G ++VI+G  N GKS+L N L K+
Sbjct: 185 DVESVKTK-----IESIHERLKEELKKADAGIMLNRGLRMVIVGKPNVGKSTLLNRLLKE 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADL 301
           D AIVTDIPGTTRDV++ ++ ++G L ++ DTAG+R ET D+VE+ GI+RTF E+E AD+
Sbjct: 240 DRAIVTDIPGTTRDVISEEIVIKGILFRVVDTAGVRSETRDLVERLGIERTFQEIEKADI 299

Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY--------DHL--ISS 345
           +L + + +S  +      +   K+  ++ +  K D+     EE          H+  IS+
Sbjct: 300 VLFVLDASSPLDDEDRLILERIKHKRYLVVINKVDIVERIDEEELKRKLGTDRHIVKISA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403
             GEGLE+L   +       F+K   S+ ++ R    L    + LE A  SL  K   +D
Sbjct: 360 LKGEGLEKLEEAVYRETQEIFEKGSSSLITNLRQKQLLENVKKSLESAIESLKNK-TPID 418

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++ +L  A   L ++TG    E LLD IFS FC+GK
Sbjct: 419 LVSIDLERALHVLDEVTGRSFREDLLDAIFSTFCVGK 455


>gi|15643037|ref|NP_228080.1| tRNA modification GTPase TrmE [Thermotoga maritima MSB8]
 gi|14195303|sp|Q9WYA4|MNME_THEMA RecName: Full=tRNA modification GTPase mnmE
 gi|4980765|gb|AAD35356.1|AE001709_2 thiophene oxidation protein ThdF-related GTPase [Thermotoga
           maritima MSB8]
          Length = 450

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 160/455 (35%), Positives = 257/455 (56%), Gaps = 26/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI AV+T     AI+I+RLSGP  +++ +  +  + K  PRKA +  +   +G  +D+ 
Sbjct: 2   DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKA-IHGWIHENGEDVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ + SP+S+TGED  E   HGG  VV  +L+   K    R+A PGEF++RAF NGK+D
Sbjct: 61  VVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLK-SGARMAEPGEFTKRAFLNGKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE++ DLI +++E   +LS+  + G L         +L  + + I  +LD+ +E + 
Sbjct: 120 LTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEIET 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              ++ EV+  +  +K  ++  + +   G ++  G ++VI+G  N GKS+L N L  +D 
Sbjct: 180 ---NTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDR 236

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIVTDIPGTTRDV++ ++ + G L +I DTAG+R ET+D+VE+ GI+RT  E+E AD++L
Sbjct: 237 AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVL 296

Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEY--------DHL--ISSFT 347
            + + +S      +K +   KN  ++ +  K D+     EE          H+  IS+  
Sbjct: 297 FVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALK 356

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           GEGLE+L   I       F++   S+ ++ R    L     +LE A  SL E    +D+ 
Sbjct: 357 GEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKE-GMPVDMA 415

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +L  A   L ++TG    E LLD IFS FC+GK
Sbjct: 416 SIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 450


>gi|153854261|ref|ZP_01995560.1| hypothetical protein DORLON_01554 [Dorea longicatena DSM 13814]
 gi|149753036|gb|EDM62967.1| hypothetical protein DORLON_01554 [Dorea longicatena DSM 13814]
          Length = 460

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 167/460 (36%), Positives = 253/460 (55%), Gaps = 33/460 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDG-RIL 61
           TI A+ST    S I I+R+SGP  FQ+ + + K KK       +  ++ Y + +DG +++
Sbjct: 8   TIAAISTAMSNSGIGIVRMSGPEAFQIADRVYKGKKEKKLCDQKSHTIHYGYIVDGEQVI 67

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+++   P S+TGED+ E + HGG+ VV  ILE L K    R A PGE+++RAF NG
Sbjct: 68  DEVLVMLMRGPHSYTGEDTVEINCHGGVYVVKRILEVLIK-NGARPAEPGEYTKRAFLNG 126

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++ DLI+S+ E   + S+  + G +     +  +K+ +  +FIE  LD  E 
Sbjct: 127 RLDLSQAEAVGDLIASQNEYALQSSVSQLKGNIKDKISEMREKILYHTAFIETALDDPEH 186

Query: 182 EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
             V  +    K+V+++I+     +      G+   II+ G + VILG  NAGKSSL N L
Sbjct: 187 ISVDGYGETLKKVVDEIMEAMKRLLDSCDDGR---IIKEGVRTVILGKPNAGKSSLLNVL 243

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIVTDI GTTRDVL   L+L+G  + I DTAGIR+T+D+VEK G+ R     + A
Sbjct: 244 LGEDRAIVTDIAGTTRDVLEEHLNLKGISLNIMDTAGIRDTEDVVEKIGVDRAKEYADKA 303

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--------ISS 345
           DLIL + +       N  + +   K    I +  KSDL    T+E + L        IS+
Sbjct: 304 DLILYVIDASRPLDENDAEILHLIKGKRAIILLNKSDLDMQVTKEQEELPEEFPVIEISA 363

Query: 346 FTGEGLEELINKIKSILSNKFK-KLPFS---IPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
              +G+EEL + +K +    F+ +L F+     ++ R    L      LE  + +   D 
Sbjct: 364 KNVQGIEELEDTLKEMF---FQGELTFNDEIYITNVRQKTALQDAYAALERVNDSIAADM 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D  + +L  A  +LG ITG    E L++ IFSKFC+GK
Sbjct: 421 PEDFYSIDLMDAYEALGNITGETIGEDLVNEIFSKFCMGK 460


>gi|224498350|ref|ZP_03666699.1| tRNA modification GTPase TrmE [Listeria monocytogenes Finland 1988]
          Length = 457

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 151/457 (33%), Positives = 248/457 (54%), Gaps = 21/457 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSDAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ +  V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMATVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLL----KEINSKKEISFPKNI--DFIFIGTKSDLYSTYTEEYDHLISS--------- 345
            ILL+    +E+ ++ E  F      +++ +  K+DL +    E    I+          
Sbjct: 301 FILLVLNQNEELTAEDEALFEAAAGHNYVVVLNKTDLETKLDIEKVREIAGENPIVATSL 360

Query: 346 FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
              EGLE L   IK++  +        +  S+ RH+  L Q +  L   +   +    +D
Sbjct: 361 VNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALDALNAVTTGIQLGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 421 IVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|61679425|pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
           Maritima
 gi|61679427|pdb|1XZQ|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
           Maritima Complexed With 5-Formyl-Thf
          Length = 482

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 160/455 (35%), Positives = 257/455 (56%), Gaps = 26/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI AV+T     AI+I+RLSGP  +++ +  +  + K  PRKA +  +   +G  +D+ 
Sbjct: 34  DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKA-IHGWIHENGEDVDEV 92

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ + SP+S+TGED  E   HGG  VV  +L+   K    R+A PGEF++RAF NGK+D
Sbjct: 93  VVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLK-SGARMAEPGEFTKRAFLNGKMD 151

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE++ DLI +++E   +LS+  + G L         +L  + + I  +LD+ +E + 
Sbjct: 152 LTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEIET 211

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              ++ EV+  +  +K  ++  + +   G ++  G ++VI+G  N GKS+L N L  +D 
Sbjct: 212 ---NTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDR 268

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIVTDIPGTTRDV++ ++ + G L +I DTAG+R ET+D+VE+ GI+RT  E+E AD++L
Sbjct: 269 AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVL 328

Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEY--------DHL--ISSFT 347
            + + +S      +K +   KN  ++ +  K D+     EE          H+  IS+  
Sbjct: 329 FVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALK 388

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           GEGLE+L   I       F++   S+ ++ R    L     +LE A  SL E    +D+ 
Sbjct: 389 GEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKE-GMPVDMA 447

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +L  A   L ++TG    E LLD IFS FC+GK
Sbjct: 448 SIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 482


>gi|238494022|ref|XP_002378247.1| mitochondrial GTPase (Mss1), putative [Aspergillus flavus NRRL3357]
 gi|220694897|gb|EED51240.1| mitochondrial GTPase (Mss1), putative [Aspergillus flavus NRRL3357]
          Length = 621

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 124/322 (38%), Positives = 192/322 (59%), Gaps = 23/322 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-----DGRI 60
           TI+A+ST +  +AI+++R+SGP C ++ + +C K   P PR A++R  F           
Sbjct: 65  TIYALSTASGRAAIAVVRVSGPGCVRIYQALCPKAALPRPRFAAVRTLFDPTREPSSSSA 124

Query: 61  LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSR 115
           LD G L++ FP+P + TGED  E H+HGG A+V  +L  ++++      +R A PGEF+R
Sbjct: 125 LDAGALVLYFPAPNTVTGEDVLELHLHGGPAIVKSVLTAISRVSQPDSLVRYAEPGEFTR 184

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N ++DL + E+L D +S++TE QRRL++ G S  LS  Y QW  +L + R  +EA 
Sbjct: 185 RAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSRRYEQWRQQLLYARGELEAL 244

Query: 176 LDFSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           +DF+E++     S + VL+    +  L+  +  HI     GE++R+G KI +LG  NAGK
Sbjct: 245 IDFAEDQHFDESSDELVLSVAAQVQALRVQVGFHIQNASKGELLRHGIKIALLGAPNAGK 304

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---------DI 283
           SSL N +  K+ AIV+   GTTRD++ + +DL G+  K+ D AGIR              
Sbjct: 305 SSLLNQIVGKEAAIVSTEEGTTRDIVDVGVDLSGWYCKLGDMAGIRSEPVNGKESVVIGA 364

Query: 284 VEKEGIKRTFLEVENADLILLL 305
           VEKEGI+R       +D+++++
Sbjct: 365 VEKEGIRRAKARALESDVVIVV 386


>gi|78185703|ref|YP_378137.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9902]
 gi|123580994|sp|Q3AVY3|MNME_SYNS9 RecName: Full=tRNA modification GTPase mnmE
 gi|78169997|gb|ABB27094.1| tRNA modification GTPase trmE [Synechococcus sp. CC9902]
          Length = 451

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 145/445 (32%), Positives = 251/445 (56%), Gaps = 34/445 (7%)

Query: 18  SAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFG----LDG-RILDKGLLIVFP 70
             I++IRLSGP   QV + +  C   + +    S R  +G    +DG R LD+ LL++  
Sbjct: 19  GGIAVIRLSGPVAEQVAQAVVQCPGHQEW---GSHRILYGHVMAVDGQRRLDEVLLLLMR 75

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
           +P SFTGED  E H HGG+  V  +LE + + P +R A PGEFS+RA  NG++DL +AE+
Sbjct: 76  APRSFTGEDVVEIHCHGGVMAVQQVLERVLEHPGVRRALPGEFSQRAVLNGRLDLTQAEA 135

Query: 131 LADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +++L+S+ +     L+M G+ G     ++ L  + +D+LT +    EA +DF  E+D+  
Sbjct: 136 VSELVSARSRRAADLAMAGLDGGIQARITVLRERLLDQLTEL----EARVDF--EDDLPP 189

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                +LN++  ++ ++ + ++ G+ G+ +R+G ++ ++G  N GKSSL N L++++ AI
Sbjct: 190 LDGTALLNELQAVRVELLALVADGERGDALRHGLRVALVGRPNVGKSSLLNRLSRRERAI 249

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL- 305
           VT++PGTTRD+L  ++ L+G  + + DTAGIR T+D VE+ GI R+   + +AD+++L+ 
Sbjct: 250 VTELPGTTRDLLESEIVLDGVPITLMDTAGIRATNDAVEQLGIARSEEALISADVVVLIV 309

Query: 306 ------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHLISSFTGEGLEELINK- 357
                  E +++     P ++  + +  KSDL         D   S+  G G +  +   
Sbjct: 310 DGHAGWTETDAQLLARIPNDVPRVVVANKSDLDGPPLPGLVDVQFSALNGAGEDAFVQVL 369

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTV--RYLEMASLNEKDCGLDIIAENLRLASVS 415
           ++   +     +  S+ + +R L  ++     R  E+A   ++    D    +LR A   
Sbjct: 370 LERCGAGDAAGIVLSLNTRQRDLASVAAAALERSHEVA---QQQLPWDFWTIDLREAIRG 426

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG+ITG    E +L+ +FS+FCIGK
Sbjct: 427 LGEITGEELTEAVLERVFSRFCIGK 451


>gi|187251665|ref|YP_001876147.1| putative GTPase [Elusimicrobium minutum Pei191]
 gi|186971825|gb|ACC98810.1| putative GTPase [Elusimicrobium minutum Pei191]
          Length = 449

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 28/455 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKG 64
           +TI AV TG+   A+++IR+SGP  +Q C     K    P    + +    DG  +LDK 
Sbjct: 3   DTICAVITGS-GGAVAVIRVSGPEAWQ-CALKLTKSSNGPEVNRVYHQKLFDGDFLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+  F +P+SFTG D+ EF  H    +   +L+ L+ M  +R A  GEFS RAF NGK+D
Sbjct: 61  LVTYFKAPKSFTGGDTVEFACHASNYIKGRLLQILSDM-GVRPAKNGEFSMRAFINGKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L+EA  L DLI+S+       +M  M G+LS+ + +  + L+ + + IE  +D  +EE +
Sbjct: 120 LVEANGLCDLIASDNAASHGAAMNSMEGKLSAEFKRIKNSLSELLAQIEVRIDDVDEE-M 178

Query: 185 QNFS---SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           Q      +K++LND+     D++S  S GK    ++ G K+ ILG  NAGKSSL NA+  
Sbjct: 179 QPLDPGYTKKILNDVKLRAGDLASTFSTGKF---VKEGIKVAILGVPNAGKSSLLNAIVG 235

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENAD 300
            D AIV++  GTTRD +    D +G+ + ++DTAGI+E   D+ E+EG++R+    + +D
Sbjct: 236 FDRAIVSEHSGTTRDTVEEIADFKGHKIILTDTAGIKEGALDVAEREGMRRSLNAADKSD 295

Query: 301 LILLLKEINSKKEISFP---------KNIDFIFIGTKSDLYSTYTE---EYDHL--ISSF 346
           +I+   +  SKK +            K    I    K D+  T  E   E D +  +SS 
Sbjct: 296 IIIFTAD-TSKKHLQADHELWNSLKIKGKKIILACNKKDINFTPPEFLYEADKVVNVSSK 354

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDII 405
           TGEG+EEL N + S+L     K   ++ +   H   L +T + LE A    +KD GL+ +
Sbjct: 355 TGEGVEELKNSVISLLDAGDIKADSNLITSAVHYDMLVKTEKELEEALKALKKDLGLEFL 414

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE++R A + L +I G V  + +L IIFSKFC+GK
Sbjct: 415 AEHVRRALLHLKEIIGEVYADDILGIIFSKFCVGK 449


>gi|238022844|ref|ZP_04603270.1| hypothetical protein GCWU000324_02764 [Kingella oralis ATCC 51147]
 gi|237865652|gb|EEP66790.1| hypothetical protein GCWU000324_02764 [Kingella oralis ATCC 51147]
          Length = 390

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 128/334 (38%), Positives = 192/334 (57%), Gaps = 9/334 (2%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + +IR+SG     + + I   K P PR A    F    G  +D G+L+ F +P SFTGED
Sbjct: 26  VGVIRISGSQLLPIAQAITGGKTPKPRTALYTDFLDEHGNAIDNGILLYFAAPASFTGED 85

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  V+  +L    ++   R+A  GEF++RAF N K+DL +AES+ADLI + +
Sbjct: 86  VIELQGHGGQIVLQMLLNRCLQL-GARIAEAGEFTKRAFLNNKLDLAQAESVADLIDASS 144

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           +   R+++  + G  S+     +D L  +R  +EA LDF EEE +    + +    +  L
Sbjct: 145 QAAARMAVRSLKGAFSNRIHALVDDLITLRMLVEATLDFPEEE-IDFLEAADAKGKLAAL 203

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           +N++S+ +S    G I+R G  +V++G  N GKSSL NALA  D+AIVT I GTTRD + 
Sbjct: 204 QNELSTILSTAGQGAILREGMNVVLVGAPNVGKSSLLNALAGDDIAIVTHIAGTTRDTVR 263

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL----KEINSKKEI- 314
             + L+G  + I+DTAG+RETDD+VEK GI+R+   V+NAD+ L+L    + IN+  +  
Sbjct: 264 EHITLDGVPIHITDTAGLRETDDLVEKIGIERSEKAVQNADVALILIDPAEGINAATQAI 323

Query: 315 --SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
               P ++  I I  K+DL +      D+ I S 
Sbjct: 324 LNKLPSSLTRIVIHNKADLRNETPSRVDNQIGSL 357


>gi|95929981|ref|ZP_01312721.1| tRNA modification GTPase TrmE [Desulfuromonas acetoxidans DSM 684]
 gi|95133950|gb|EAT15609.1| tRNA modification GTPase TrmE [Desulfuromonas acetoxidans DSM 684]
          Length = 458

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 156/456 (34%), Positives = 250/456 (54%), Gaps = 21/456 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVC--EFICKKKKPFPRKASLRYFFGL---DG 58
           E +TI A  T     A++I+RLSG     +    F  K    F    S  +++G    +G
Sbjct: 5   EDDTIIAPLTAPGHGAVTILRLSGSKSLDLVLTHFFNKSFNRFRSLLSHYFYYGFICDEG 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ +++   SP+S+T ED  E H H  +AVV  I++   +   +R+A PGEF+ RAF
Sbjct: 65  VSIDEVMVVYMASPKSYTREDVVEIHCHSSVAVVRNIIDIFVR-SGVRIAEPGEFTYRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           +NG+IDL  AE++ADLI++++ M  +L++  M G LS    ++ D +  + + IEA +DF
Sbjct: 124 KNGRIDLSHAEAIADLIAAKSTMASQLALRQMKGALSGRVYEFKDTILSMLALIEAYIDF 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            EE D+    +  +  D   L + +   +S    G+I+R G+ ++ILG  N GKSSL N 
Sbjct: 184 PEE-DIDKHHALSIQRDCELLLSKVEETLSGYDEGKILREGFSLLILGKPNVGKSSLLNL 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVT+IPGTTRD++   + L GY + + DTAGIR++DD +E++G+ R   ++ +
Sbjct: 243 LVGEDRAIVTNIPGTTRDIIQETITLHGYPITVIDTAGIRDSDDPIEQDGVSRAKNQIGS 302

Query: 299 ADLILLLKEINSKKEISFPKNID------FIFIGTKSD------LYSTYTEEYDHLISSF 346
           AD+IL + + +   +IS  ++I       FIF+  K D        S  +   +  IS  
Sbjct: 303 ADVILYMVDGSQPFDISIVQDIKLLPADRFIFVVNKCDKPDFDFQESQISNFINFSISVK 362

Query: 347 TGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404
              G+E+LIN I   L+ N        + S +RH   L +   +L +     E     + 
Sbjct: 363 ENTGVEQLINGILDKLNLNSRHHDESVVLSDRRHKDILVRCHAFLKDFIEAFESGHSDEF 422

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A +LR A  +LG+ITG    + +L+ IF +FCIGK
Sbjct: 423 LALHLREALQALGEITGETTPDDILNDIFGRFCIGK 458


>gi|319651095|ref|ZP_08005229.1| TRNA modification GTPase [Bacillus sp. 2_A_57_CT2]
 gi|317397265|gb|EFV77969.1| TRNA modification GTPase [Bacillus sp. 2_A_57_CT2]
          Length = 461

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 152/461 (32%), Positives = 260/461 (56%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD-- 57
           E +TI A+ST     AI+I+RLSG   F++ + + +    K+       ++ Y   +D  
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDQAFEIADRLFRGVGGKRLKDVASHTIHYGHIMDPK 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G+I ++ ++     P++FT ED  E + HGG+  VN +L+ L      RLA PGEF++R
Sbjct: 62  TGQIAEEVMVSAMKGPKTFTKEDVIEINCHGGLVSVNRVLQLLLN-NGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G LS L  +   ++  I + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNMALGQMEGRLSKLIQKLRQEILEILAHVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  + + ++    ++K +I   +   + G+I+R G   VI+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTHQMLMEKASYVKQEIEKLLQTSQQGKILREGLSTVIVGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++++   +
Sbjct: 241 NSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVEKSRQVL 300

Query: 297 ENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYT-------EEYDHLI 343
           + ADLILL+     E+ S+ E  F   + +D I I  K+DL             ++  L+
Sbjct: 301 KEADLILLVLNYSDELTSEDENIFKAVEGMDVIVIVNKTDLDQKIDMNRVRELSKHHKLV 360

Query: 344 SS--FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
           ++     +G+++L   I S+  +   +    +  S+ RH+  L+Q    ++ A    E  
Sbjct: 361 TTSLLEDQGVDDLEEAIASLFFAGSIEAGDMTYVSNTRHIALLNQAQNAIDEAMQGVEMG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DI+  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 421 TPIDIVQIDLTRTWELLGEIIGDSVHESLIDQLFSQFCLGK 461


>gi|327354725|gb|EGE83582.1| mitochondrial GTPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 636

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 174/548 (31%), Positives = 268/548 (48%), Gaps = 114/548 (20%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           ++    TI+A+ST    +AI+I+R+SGP+C Q+   +C K   P PR A+LR  F     
Sbjct: 90  LDEPSPTIYALSTAPGRAAIAIVRISGPACVQIYNALCPKSPLPEPRVAALRTLFDPSVP 149

Query: 58  ---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP----------- 103
                ILD+ +++ FP+P++ TGED  E H+HGG AVV  +L  + +             
Sbjct: 150 PSVNSILDRAVVLHFPAPKTVTGEDILELHIHGGPAVVKAVLNAIPRCAESASSDKFAPS 209

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
           ++R A PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G +  L+  Y +W  
Sbjct: 210 SIRYAEPGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAIRGTNDSLAVRYERWRQ 269

Query: 164 KLTHIRSFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
           +L + R  +EA +DFSE+    E  + F S  +  +   L   I+ HI     GE++RNG
Sbjct: 270 QLLYTRGEMEALIDFSEDQHFDESTEEFVSS-ITGETRNLVRQINMHIENASKGELLRNG 328

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ +LG  NAGKSSL N +  ++ AIV+   GTTRD++ + +DL GY  K  D AG+R 
Sbjct: 329 IKVALLGAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGYFCKFGDMAGLRS 388

Query: 280 TD---------DIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF---PKNID--- 321
                        VE+EGI+R       +D++++   L+E +S + +     P+ ID   
Sbjct: 389 GHIAQAGQMPIGAVEQEGIRRAKARALESDVVIVVLSLEEGDSGRGVKLVLEPEVIDAVQ 448

Query: 322 --------FIFIGTKSDLYSTYTE---EYDHLISSFTGE--------------------- 349
                    I    K D Y+  T        L++S  GE                     
Sbjct: 449 SCIALEKHMIVAVNKFDKYTPATNTDGTAQGLVNSLAGEITSLVPHIVQDQIFLISCREA 508

Query: 350 ---------------GLEELINKIKSILS--------NKFKKLPFSIP---SHK------ 377
                           L+ELI   K + +        +KF KL +      +H+      
Sbjct: 509 ENEQSETADPGNIQTLLKELIRTFKRMSTPSELENGNDKFDKLYWEDSLGVTHRQSSNLQ 568

Query: 378 ---RHLYH-LSQTVRYLEMASLNEK-DCGLDII--AENLRLASVSLGKITG---CVDVEQ 427
              +HL   LSQT +  + A   E+ +  +DI+  AE+LR A+  L KITG     DVE 
Sbjct: 569 KCVQHLNDFLSQTCQTPDNAGNAEQIELNIDIVTAAEHLRFAADCLAKITGRGESGDVED 628

Query: 428 LLDIIFSK 435
           +L ++F K
Sbjct: 629 VLGVVFEK 636


>gi|302872910|ref|YP_003841546.1| tRNA modification GTPase TrmE [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575769|gb|ADL43560.1| tRNA modification GTPase TrmE [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 455

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 166/459 (36%), Positives = 249/459 (54%), Gaps = 27/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFP-RKASLRYFFGLD 57
           E +TI A+ST      I I+R+SG   + V   + K +K       P R A+L   +  D
Sbjct: 2   EFDTIVAISTPVGTGGIGIVRISGKDAYDVAGKLVKSRKYKSIHDIPVRYAALVDVYDGD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +LI F SP S+TGED  E   HGG+ V+  ILE   K    R A PGEF++RA
Sbjct: 62  -EFVDEAILIKFKSPRSYTGEDVVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGKIDL +AE++ D+I+S+T++ ++ + + + G LS    +    L ++ + IEA +D
Sbjct: 120 FLNGKIDLSQAEAVIDIINSKTKLLQQNAAKQLKGMLSQRIEEISQLLLNLVATIEASID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE E V   S  E+L+ I      I   I   + G+ I++G   VI+G  N GKSSL N
Sbjct: 180 FSEHE-VDEVSHDEILSTIDDALAKIEKLIKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K++ AIVTDIPGTTRDV+   LD+EG  + ++DTAG+R T+D+VEK G++RT   +E
Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGLPIILADTAGVRRTEDVVEKIGVERTLKSIE 298

Query: 298 NADLILLLKE--------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
            ADL+L + E              I  K+ +     ID     ++ D+   + +E   + 
Sbjct: 299 RADLVLFMVESSGILQEDLEIFETIKDKRFVVLVNKIDREVKVSQDDIKRIFGKE--GIF 356

Query: 344 SSFTGEGLEELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            S   +   EL+ K     +LS   +     + ++ RH   L +   +L  A  N     
Sbjct: 357 ISVEHDKNLELVEKAIAHEVLSQNIEAFDSVLITNLRHKELLLKAKEFLLSAKANIFSVP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LDI++ +++ A  +L +ITG    E ++D IFS FCIGK
Sbjct: 417 LDILSIDIKNALENLYQITGKNVTEDMVDRIFSMFCIGK 455


>gi|116513181|ref|YP_812088.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris
           SK11]
 gi|123025076|sp|Q02VP7|MNME_LACLS RecName: Full=tRNA modification GTPase mnmE
 gi|116108835|gb|ABJ73975.1| tRNA modification GTPase trmE [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 455

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 155/457 (33%), Positives = 261/457 (57%), Gaps = 21/457 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI+I+RLSG    ++ + + K K    + AS    +G    +
Sbjct: 3   LTQEFDTIAAISTPLGEGAIAIVRLSGTDALKIAQSVYKGKN-LAQVASHTINYGHIFEE 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            R++D+ ++ V  +P++FT ED  E + HGGIAV   IL+ L +    RLA PGEF++RA
Sbjct: 62  ERLVDEVMVSVMRAPKTFTREDIVEINTHGGIAVTQEILQLLLR-NGARLAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ DLI ++T+    ++++ + G LS +       +    + +E ++D
Sbjct: 121 FLNGRIDLAQAESVMDLIRAKTDKAANIAVKQLDGSLSKMINNIRQDILESLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  +S+ +L      +  + + +S  K G+I+R G K  I+G  N GKSSL N
Sbjct: 181 YPEYDDVETMTSQMLLEKTAHFEQLLENLLSTAKRGKILREGLKTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+T   ++ G  +++ DTAGIRETDD+VE  G++R+   + 
Sbjct: 241 QLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDDLVEAIGVERSKKALA 300

Query: 298 NADLILLL----KEINSK--KEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSF 346
            ADL+LL+     E+  K  + +   KN + I +  K+DL      +  + ++   IS+ 
Sbjct: 301 EADLVLLVLDASLELTDKDLELLELSKNANRIVLLNKTDLPEKLDINQISGDFIR-ISAL 359

Query: 347 TGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--D 403
             E L  +  KI  I  + + +    ++ S+ RH+  + + ++ L+ A+ N    GL  D
Sbjct: 360 KNENLSAVEEKINQIFFAGEIEAKDATVLSNARHISLVEEALKALKEAN-NGLALGLPVD 418

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 LIQVDVTRCWQLLGEITGEAAPDELITQLFSQFCLGK 455


>gi|313679829|ref|YP_004057568.1| tRNA modification GTPase trme [Oceanithermus profundus DSM 14977]
 gi|313152544|gb|ADR36395.1| tRNA modification GTPase trmE [Oceanithermus profundus DSM 14977]
          Length = 436

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 147/443 (33%), Positives = 245/443 (55%), Gaps = 21/443 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           +TI AV+T   P  + ++R+SGP   +V   + + + P       R++ G       G  
Sbjct: 7   DTIAAVATPPGPGGVGVLRVSGPQALEVAARVWRGRDPRTSPGG-RFWHGWIVDPATGEP 65

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ +L+VF SP S+TGED  E   HG  AV+  +L  L +   +R A PGEF+ RA+ N
Sbjct: 66  VDEAVLLVFRSPRSYTGEDVVELQTHGSPAVLGRVLRLLLEA-GVRPAGPGEFTLRAYLN 124

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AES+  L+ +E+E  RR ++ G++ +LS       D+L  + + I+A LD+ E
Sbjct: 125 GRMDLAQAESVLALVEAESETARRQALRGLTRKLSQKIDALADRLLDLLAHIQALLDYPE 184

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  V+  +++ V+  +L    ++ + ++    G  +R G ++ ++G  NAGKSSL NAL 
Sbjct: 185 E-GVEPHAAERVIASVL---EEVEALLATADAGRRVREGARLALVGAPNAGKSSLLNALL 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + A+V D PGTTRD L   L++EG  +   DTAG+R TDD VE  G++R       AD
Sbjct: 241 GFERALVHDRPGTTRDYLEAALEIEGVPLVAVDTAGLRRTDDPVEAAGVERALAVAREAD 300

Query: 301 LILLLKEINSKKEISFPKNIDF---IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
           LIL L  ++  +    P ++ +   I + TK+DL + + +     +S+ +G+GL+ L  +
Sbjct: 301 LILYL--VDRSRPRPDPPSLPWARTIRLATKADLPAAWRDPDFLEVSAHSGQGLDALRAR 358

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           I++ L     +    I S +RH   L++   +L    L  +    D++  +L  A+ +LG
Sbjct: 359 IRARLLGGASESEVWITS-ERHREALAEARAHL----LEARGAPEDLMGMSLEAAARALG 413

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           +ITG    E+ +  IF  FC+GK
Sbjct: 414 RITGREATEETVARIFQNFCVGK 436


>gi|218291088|ref|ZP_03495111.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218238973|gb|EED06180.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 465

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 149/463 (32%), Positives = 245/463 (52%), Gaps = 29/463 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLD-- 57
            +++TI A++T    ++++I+R+SG     V E + + K+  P   R+  +RY   ++  
Sbjct: 7   EQEDTIAAIATAVGEASVAIVRVSGRGARDVGERLVRSKRGLPVKLRERGMRYGQVINPK 66

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G ++D+ +++  P P S+TGED  E  VHGG   V  +L    +    R+A PGEF++R
Sbjct: 67  SGDVIDEAIVLWMPGPHSYTGEDVLELQVHGGTYAVEEVLSACLEA-GARMAEPGEFTKR 125

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T    +L+   + G           +L  + + +E  +
Sbjct: 126 AFLNGRIDLSQAEAVIDLIRAKTAFAGKLAERQVRGRFGEAVRALRRRLLELEAHVEVTI 185

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  DV++ +   V++    +  +I S I   +LG ++R+G    I+G  N GKSSL 
Sbjct: 186 DYPEH-DVEDVACDHVVSVCEGMMGEIDSLIRSAELGRVLRDGVATAIVGRPNVGKSSLL 244

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL ++D AIVTD+PGTTRDVL   ++L G  +++ DTAGIRET+D+VE+ G+ R+   +
Sbjct: 245 NALVERDRAIVTDLPGTTRDVLEEYINLRGIPLRLIDTAGIRETEDVVERIGVARSRESM 304

Query: 297 ENADLILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           + A+L+LL+               +E +  + I     ID       + L      E   
Sbjct: 305 QKAELVLLVLDGSEPPSPEDEAIARESDGSRRIVVLNKIDRGIHAEAARLADELAPEGAV 364

Query: 342 LISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
            +S+  G GL+ L    +NKI+  L+        +    KR L    + +R    A+   
Sbjct: 365 RVSAREGTGLDTLRDAIVNKIRRDLAIDLDASYMANHRQKRLLEEAKEDLRTARDAA--R 422

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               LD++A  L+ A   LG+  G    E LL+ IFS+FC+GK
Sbjct: 423 AGATLDLVAVALQSAYGKLGETIGEEAGEDLLNEIFSRFCLGK 465


>gi|182416744|ref|ZP_02948141.1| tRNA modification GTPase TrmE [Clostridium butyricum 5521]
 gi|237669621|ref|ZP_04529599.1| tRNA modification GTPase TrmE [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379401|gb|EDT76896.1| tRNA modification GTPase TrmE [Clostridium butyricum 5521]
 gi|237654855|gb|EEP52417.1| tRNA modification GTPase TrmE [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 460

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 167/463 (36%), Positives = 259/463 (55%), Gaps = 29/463 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP--RKASLRY--FFGL 56
            E +TI A++T      I+IIR+SG    ++ +  F  K KK     +  ++RY     L
Sbjct: 2   REFDTICAIATPIGEGGIAIIRISGEKALEIADKIFAPKSKKDIKDMKTYTMRYGTIVDL 61

Query: 57  DGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           D + I+D  +L     P S+TGE+  E + HGG+   N +L ++ K    R+A PGEF++
Sbjct: 62  DTKDIIDDVILSYMKGPRSYTGENVIEVNCHGGVVATNRVLNQIVK-AGARIAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE+  D+I ++TE+  + +M    G LS   G+    L ++ + IE  
Sbjct: 121 RAFLNGRIDLSQAEATMDIIKAKTELSMKSAMMQSKGALSKEIGELRKYLLNVLALIEYA 180

Query: 176 LDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           +DF+E+++         ++ + I      I+S +     G+IIR+G  IVI+G  N GKS
Sbjct: 181 VDFTEDDEDIVDDDLIAQIKDSITKTITRINSLLKNADEGKIIRDGLNIVIVGKPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N+L ++  AIVTDIPGTTRD++   ++L+G  +KI+DTAGIR+T+D VEK G++R+ 
Sbjct: 241 SLLNSLLREKRAIVTDIPGTTRDIIEEYINLDGIPIKITDTAGIRDTEDTVEKIGVERSK 300

Query: 294 LEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY------DH 341
            ++E ADL++L+ + +   +      I    +  +I +  K DL    +EE         
Sbjct: 301 EKIEEADLVILMLDTSRALDDEDRVIIDAINDKKYIALLNKVDLECKLSEEVITSLNRTI 360

Query: 342 LISSFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYH-LSQTVRYLEMASLNE 397
            IS+ TG G+E L  +IK++  N     + L  S   HK+ LY  L      LE  +LNE
Sbjct: 361 EISAKTGFGIENLKEEIKNLFFNGEIDSESLIISNTRHKQALYRSLEDCNLALEKINLNE 420

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               LD+I+  +  A  +LG+ITG    E LL+ IFS+FC GK
Sbjct: 421 Y---LDLISIYITSAMRALGEITGDELEEDLLNKIFSEFCCGK 460


>gi|148269793|ref|YP_001244253.1| tRNA modification GTPase TrmE [Thermotoga petrophila RKU-1]
 gi|205829183|sp|A5IKF4|MNME_THEP1 RecName: Full=tRNA modification GTPase mnmE
 gi|147735337|gb|ABQ46677.1| tRNA modification GTPase trmE [Thermotoga petrophila RKU-1]
          Length = 450

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 160/455 (35%), Positives = 258/455 (56%), Gaps = 26/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI AV+T     AI+I+RLSGP  +++ +  +  + +  PRKA +  +   +G  +D+ 
Sbjct: 2   DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSEIVPRKA-IHGWIHENGEDVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I + SP+S+TGED  E   HGG  VV  +L+   K    R+A PGEF++RAF NGK+D
Sbjct: 61  VVIFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLK-SGARMAEPGEFTKRAFLNGKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE++ DLI +++E   +LS+  + G L         +L  + + I  +LD+ +E + 
Sbjct: 120 LTSAEAVRDLIEAKSETSLKLSLRNLKGGLKDFVESLRRELIEVLAEIRVELDYPDEIET 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              ++ EV+  +  +K  ++  + +   G ++  G+++VI+G  N GKS+L N L  +D 
Sbjct: 180 ---NTGEVVTRLERIKEKLTKELKKADAGILLNRGFRMVIVGKPNVGKSTLLNRLLNEDR 236

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIVTDIPGTTRDV++ ++ + G L +I DTAG+R ET+D+VE+ GI+RT  E+E AD++L
Sbjct: 237 AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVL 296

Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEY--------DHL--ISSFT 347
            + + +S      +K +   KN  ++ +  K D+     EE          H+  IS+  
Sbjct: 297 FVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALK 356

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
           GEGLE+L   I       F++   S+ ++ R    L     +LE A  SL E    +D+ 
Sbjct: 357 GEGLEKLEEAIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKE-GMPVDMA 415

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +L  A   L ++TG    E LLD IFS FC+GK
Sbjct: 416 SIDLERALSLLDEVTGRSFREDLLDTIFSNFCVGK 450


>gi|299471091|emb|CBN78950.1| TrmE, organellal GTPase involved in tRNA modification [Ectocarpus
           siliculosus]
          Length = 790

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 201/350 (57%), Gaps = 49/350 (14%)

Query: 5   KETIFAVSTG-ALPSAISIIRLSGPSCFQVCEFIC------------------------- 38
           ++TIFA++TG A P+ ++++R+SGP   QV + +                          
Sbjct: 195 EDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSAANLSSVTAAEASAGGDAGVAASA 254

Query: 39  -----------KKKKPFP--RKASLRYFF-GLDGRILDKGLLIVFPSPESFTGEDSAEFH 84
                      ++  PFP  R+A +R  +    G +LD+ L++  P P SFTGED+ E H
Sbjct: 255 APAVVNGGGAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRSFTGEDTVELH 314

Query: 85  VHGGIAVVNGILEELAKMP------NLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
            HG  AV+NG+L+ LA M        +RLA  GEF++RA+ NG++DL   E LADLI+++
Sbjct: 315 THGSRAVINGVLDALAGMGAASGMRRVRLAERGEFTQRAYGNGRMDLTGVEGLADLIAAD 374

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE-EEDVQNFSS-KEVLNDI 196
           T  QR+ +++ M G L  +Y +W  +L    +  EA +DF + EEDV   ++   ++  +
Sbjct: 375 TAAQRKQALKQMGGALRDMYEEWRHQLKGCLAHAEAVIDFGDDEEDVGGDAAFAAMMPRV 434

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L  +I  H+  G  GEI+R+G ++ I+G  NAGKSSL N LA +  AIV+ + GTTRD
Sbjct: 435 RGLAAEIDRHLRDGGRGEIVRSGVRVAIVGPPNAGKSSLLNLLAARPAAIVSPVAGTTRD 494

Query: 257 VLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVENADLILLL 305
           V+ + +D+ G  V +SDTAG+ + TDD +E+EG++R    V+NA L + +
Sbjct: 495 VVEVQMDIAGLPVTLSDTAGLPKATDDEIEREGMRRARSAVDNAHLAIFV 544



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 5/101 (4%)

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLP---FSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           +S  T EGL+  +  +++ + ++F+        + + +RH  H+   +  L  A      
Sbjct: 692 LSCKTKEGLDGFMEHLEAEVRSRFQGAADDESPLITRRRHRQHVEACLLALRAA--QRPQ 749

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LD+ AE LR+AS  LG+ITG V VE+LLD+IF  FCIGK
Sbjct: 750 MPLDLAAEELRIASSELGRITGAVGVEELLDVIFRDFCIGK 790


>gi|188587519|ref|YP_001919064.1| tRNA modification GTPase TrmE [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|205415781|sp|B2A470|MNME_NATTJ RecName: Full=tRNA modification GTPase mnmE
 gi|179352206|gb|ACB86476.1| tRNA modification GTPase TrmE [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 458

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 163/461 (35%), Positives = 258/461 (55%), Gaps = 30/461 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
           ++TI A+ST      I++IR+SGP      + I +  +      + + + G        R
Sbjct: 3   EDTIAALSTPPGEGGIAVIRVSGPDSQNKVKQIFRSSRTDGNFNNKKMYHGQIVSPETNR 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ILD+ L++    P ++T ED  E H HGG+  V  IL+ L     +R A PGEF++RAF 
Sbjct: 63  ILDEVLVVFMNKPYTYTCEDVVEIHCHGGMVPVKEILQLLFSY-GIRPAEPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE + DLI+S+T   + +++  + G L     +  D L  + + +EA +DF 
Sbjct: 122 NGRLDLTQAEGVMDLITSKTNNLKNVAINQLQGNLKQKIDRLRDDLVSVMANLEARIDFP 181

Query: 180 EEE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E+ DV+++   E+ + I   K DI++ I+    G+IIR G K VI+G  N GKSSL N 
Sbjct: 182 DEDIDVEDYH--ELKHRIDNAKVDINNLIASYDKGKIIREGIKTVIVGRPNVGKSSLLNL 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVT+IPGTTRDVL   ++L+G  ++I DTAGIRE++D VE+ G+KRT   +E 
Sbjct: 240 LLGEERAIVTEIPGTTRDVLEEVINLKGIPLRIIDTAGIRESEDKVEQIGVKRTRDSMEQ 299

Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------- 342
           AD+IL++  I+S +E+S          ++   + +  K+DL+     +E D L       
Sbjct: 300 ADIILVV--IDSSQELSQEDKQILTMAQDKTSLLVLNKTDLHEKLDIDEIDKLVSQIPKV 357

Query: 343 -ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-D 399
            IS+   EGL++L   I   +   +  +    + +  RH + L +    L  A  N K +
Sbjct: 358 RISALKEEGLDKLEEHISELVFGGQVMQTEELVITKARHFHSLDKVKEALSSAEENIKAE 417

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D+IA +++ A   LG+ITG    E+L+D IF+ FCIGK
Sbjct: 418 MSEDLIAIDIKEAYDYLGEITGETASEELVDRIFNDFCIGK 458


>gi|312797626|ref|YP_004030548.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Burkholderia rhizoxinica HKI 454]
 gi|312169401|emb|CBW76404.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Burkholderia rhizoxinica HKI 454]
          Length = 493

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 152/467 (32%), Positives = 240/467 (51%), Gaps = 32/467 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFG 55
           M  + + I A++T      I ++R+S       +  ++ + + + +   PR+A    FF 
Sbjct: 32  MQTDSDPIVAIATAPGRGGIGVVRVSFGAAGADAAVRLMDALFRDRLA-PRRAVYVPFFD 90

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+          LRLA PGE
Sbjct: 91  AAGVPLDRGIGLYFPAPHSYTGEHVVELQGHGGPVVLQLVLQRCLDAGCDIGLRLAQPGE 150

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S    + +D++  +R  +
Sbjct: 151 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSRDIHRLVDEVVGLRMLV 210

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF EEE +    + +    +  +++ +++     K G ++R G  +V+ G  N GK
Sbjct: 211 EATLDFPEEE-IDFLEAADARGKLARIRDALAAVQRDAKQGALLREGLSVVLAGQPNVGK 269

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NAL   ++AIVT I GTTRD +   + +EG  + + DTAG+R+T D VE+ GI R+
Sbjct: 270 SSLLNALVGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTQDEVERLGIARS 329

Query: 293 FLEVENADLILLLKEINSKKEI-------SFPKNIDFIFIGTKSDLYSTYTEEYDH---- 341
           + E+E AD++L L +      +        FP  +  + I  K DL     +  D     
Sbjct: 330 WNEIERADVVLHLLDARDGMSVEDHAIAARFPAGVPVVRIFNKIDLAGVEPDVRDAGDSA 389

Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL----EMA 393
                +S+    G++ L  ++  I   +       + + +RHL  L     +L    E A
Sbjct: 390 AREVRLSAKAALGIDLLRAELLRIAGWQAGAESVYL-ARERHLRALRAAGEHLATAAEHA 448

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + N +   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 449 ARNAQ--ALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 493


>gi|212640677|ref|YP_002317197.1| tRNA modification GTPase TrmE [Anoxybacillus flavithermus WK1]
 gi|212562157|gb|ACJ35212.1| tRNA modification GTPase, TrmE [Anoxybacillus flavithermus WK1]
          Length = 464

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 251/463 (54%), Gaps = 29/463 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56
           E +TI A+ST     AI+I+RLSG    ++ +  F+    K      S    +G      
Sbjct: 5   EFDTIAAISTPMGEGAIAIVRLSGDEAIKIVDQLFVGVGGKKLKDVPSHTIHYGHIVHPE 64

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
               +++ ++ V  +P++FT ED  E + HGG+  VN +L+ L      RLA PGEF++R
Sbjct: 65  TKETIEEVMVTVMKAPKTFTREDVVEINCHGGLVSVNRVLQ-LVLAYGARLAQPGEFTKR 123

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G LS L  +    +    + +E ++
Sbjct: 124 AFLNGRIDLSQAEAVIDLIRAKTDRAMAVALNQMEGRLSKLIRRLRQTILETLAHVEVNI 183

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  + + +L     +KN+I   +   + G+++R+G   VI+G  N GKSSL 
Sbjct: 184 DYPEYDDVEEMTHRLLLEKATEVKNEIERLLQTAQQGKVLRDGLATVIIGRPNVGKSSLL 243

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+LA ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 244 NSLAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLLDTAGIRETEDIVERIGVERSRKVL 303

Query: 297 ENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHL-------- 342
           + ADLILL+   N    +         K +D I I  K+DL      + D +        
Sbjct: 304 KEADLILLVLNYNEPLTVEDEQLFEAVKGMDVIVIVNKTDLPKQI--DMDRVKQLAQGLP 361

Query: 343 ---ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
               S     G+++L   I S+  S   +    +  S+ RH+  L+Q  + +E A    E
Sbjct: 362 IITTSLLEDRGIDQLEEAIASLFFSGDVEARDLTYVSNSRHIALLTQAKKAIEEAIHGIE 421

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +DI+  +L  A   LG+I G    E L+D +F++FC+GK
Sbjct: 422 AGMPIDIVQIDLTRAWELLGEIVGDTVHESLIDQLFAQFCLGK 464


>gi|193214522|ref|YP_001995721.1| tRNA modification GTPase TrmE [Chloroherpeton thalassium ATCC
           35110]
 gi|193087999|gb|ACF13274.1| tRNA modification GTPase TrmE [Chloroherpeton thalassium ATCC
           35110]
          Length = 483

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 155/467 (33%), Positives = 255/467 (54%), Gaps = 36/467 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--------KKPFPRKASLRYFFGLD 57
           E I AV+T     A+SI+R++G     V + + +K               A    F  L 
Sbjct: 21  EAIAAVATPVGEGALSIVRMTGEGVLAVADKVFRKIDGDNFSFASCRSHTAHYGRFNNLA 80

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ++D+ + IV+ +P SFT ED  EF+ HGG+ V   +L+ L +    RLA PGEF+RRA
Sbjct: 81  GELIDEVMAIVYRAPRSFTTEDMVEFNCHGGVIVTETVLQTLLE-AGCRLAEPGEFTRRA 139

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL++AE++ ++I ++T+   R ++  + G+LS   G    +L +  S +E +LD
Sbjct: 140 FLNGRIDLVQAEAVGEMIHAKTQTAYRSAISQLKGDLSLKLGSLRTELLNACSMLELELD 199

Query: 178 FSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           FSEE DV+ F S+E L+  L  +  ++ +  +  + G+ ++ G    I+G  NAGKS+L 
Sbjct: 200 FSEE-DVE-FQSREALSARLSAMATELEALANTFRFGKFVKEGVATAIVGRPNAGKSTLL 257

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  K+ AIV+ +PGTTRD +     L+G   ++ DTAG+R +DD +E EGI+R++ ++
Sbjct: 258 NALLGKERAIVSHVPGTTRDYIEESFVLDGVPFRLIDTAGLRLSDDALESEGIRRSYEKI 317

Query: 297 ENADLILLLKEINSK------KEI----SFPKNIDFIFIGTKSDL------YSTYTEEYD 340
             ADL++ + +   K       EI        +  F  +  K D       ++   +E +
Sbjct: 318 TEADLVIFVHDATEKITEAERTEILALRKKSAHAKFFIVANKIDCVTGAPNFANAPDEQE 377

Query: 341 HL----ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMA- 393
           H+    IS+   EGL EL  K+K+ L+   +KL     + +++RH   +   +  L++A 
Sbjct: 378 HIEVVPISALRREGLSELRQKMKT-LATGLEKLNEGSLVITNQRHFEAIKNALERLQVAR 436

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L  +    ++IA +LR     +G I G V  + +L+ IF +FCIGK
Sbjct: 437 ELLIEGAETELIASDLREVLHQIGSIIGKVTTDDILNNIFDRFCIGK 483


>gi|149925382|ref|ZP_01913646.1| tRNA modification GTPase TrmE [Limnobacter sp. MED105]
 gi|149825499|gb|EDM84707.1| tRNA modification GTPase TrmE [Limnobacter sp. MED105]
          Length = 459

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 159/458 (34%), Positives = 250/458 (54%), Gaps = 31/458 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQV---CEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + I A++T      + ++R S PS       C   C K  P PR A+L     +D   +D
Sbjct: 10  DPIVAIATAPGKGGVGVVRFSFPSSSSFQAFCAAFCGKL-PKPRMATLLTLRDVDQHAID 68

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE---LAKMPN--LRLANPGEFSRRA 117
           +G+ ++F +P SFTGE   EF  HGG AV+ G++     +A+  N  LR A  GEF++RA
Sbjct: 69  EGIALLFNAPASFTGEHVLEFQGHGGQAVLQGVVAHALAVARQLNIPLRHAMAGEFTQRA 128

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K+DL +AE++ADLI + +    + +   +SG  S    +  D++ H+R  +EA LD
Sbjct: 129 FLNDKLDLAQAEAVADLIDAGSMATAKAAAASLSGVFSRQVNELADRIVHLRLLLEATLD 188

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EEE ++     +    +  + N     ++  + G   R+G +IV++G  N GKSSL N
Sbjct: 189 FPEEE-IEFLEKADAKGQLAGILNAHGQLLNAAQEGVKFRDGLQIVLVGEPNVGKSSLLN 247

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           ALA +++AIV+ I GTTRD +  +L++ G  + + DTAG+RET D VE+ GI+RT   V+
Sbjct: 248 ALAGEEIAIVSAIAGTTRDRIKQELNIRGIPLVLVDTAGLRETVDEVERIGIERTRKSVQ 307

Query: 298 NADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--ISSFTGE 349
            ADL+L+LK+          + +  P ++  + +  K DL     +    +  +S+  G+
Sbjct: 308 EADLLLILKDATQGPHDALHQHLELPVHLPTLTVLNKVDLLPEAPQLLQDVLPVSAKNGQ 367

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSH-----KRHLYHLSQTVRYLEMAS--LNEKDCGL 402
           GLE+L + I + +           P H     +RH+  L    ++L  A     + D  L
Sbjct: 368 GLEQLKDAILAKVGIAHT------PDHGFMARQRHVDALLVCGQHLVAAHEFAQQDDRIL 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+ AE LRLA  +LG+ITG +  + LL +IFS+FCIGK
Sbjct: 422 DLFAEELRLAHDALGEITGRMLPDDLLGLIFSRFCIGK 459


>gi|205371919|ref|ZP_03224739.1| tRNA modification GTPase TrmE [Bacillus coahuilensis m4-4]
          Length = 461

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 154/461 (33%), Positives = 256/461 (55%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG----- 58
           E +TI A+ST     AI+I+RLSG    ++ + + +K    P K  + +           
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDQAVEIADRVFRKPNSQPLKDQISHTIHYGNIIEPE 61

Query: 59  --RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +++++ ++ +   P +FT ED  E + HGGI  VN +L+ L      RLA PGEF++R
Sbjct: 62  TEQVIEEVMVSLMRGPRTFTREDVVEINCHGGIVSVNKVLQ-LVVRQGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G LSSL  +   ++    + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSSLIRKLRQEILETLAHVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  + + +L     +K++I   +   + G+I+R G   VI+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTHRVLLEKSSKVKHEIELLLRTSEQGKILREGLSTVIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++++   +
Sbjct: 241 NSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVEKSRQVL 300

Query: 297 ENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLI 343
           + ADL+LL+     E   + E  F   + +D I I  K+DL      E          L+
Sbjct: 301 KEADLLLLVLNHGDEFTEEDENLFKAVEGMDVIVIVNKTDLPQVINMEKVRELSKNHRLV 360

Query: 344 SSFTGE--GLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
           ++   E  G++EL   I S+  S   +    +  S+ RH+  L+Q  + +E A    E  
Sbjct: 361 TTSLKEEQGIDELEEAIASLFFSGSIESGDLTYVSNSRHIALLTQAKQAIEEAIDGVEMG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DI+  +L  +   LG+I G    E L+D +FS+FC+GK
Sbjct: 421 TPIDIVQIDLTRSWELLGEIIGDSVHESLIDQLFSQFCLGK 461


>gi|46909000|ref|YP_015389.1| tRNA modification GTPase TrmE [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093270|ref|ZP_00231041.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 4b
           H7858]
 gi|290891992|ref|ZP_06554989.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-071]
 gi|67461967|sp|Q71VV0|MNME_LISMF RecName: Full=tRNA modification GTPase mnmE
 gi|46882273|gb|AAT05566.1| tRNA modification GTPase TrmE [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018344|gb|EAL09106.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 4b
           H7858]
 gi|290558586|gb|EFD92103.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-071]
          Length = 457

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 150/461 (32%), Positives = 249/461 (54%), Gaps = 29/461 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEYDHL---------- 342
            ILL+  +N  +E++             +++ +  K+DL +    + D +          
Sbjct: 301 FILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKL--DIDRVRELAGENPIV 356

Query: 343 -ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
             S    EGLE L   IK++  +        +  S+ RH+  L Q +  L   +   +  
Sbjct: 357 STSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 417 MPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|90194086|gb|ABD92604.1| ThdF [Actinobacillus minor NM305]
          Length = 436

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/437 (34%), Positives = 244/437 (55%), Gaps = 29/437 (6%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTGE
Sbjct: 7   GVGILRVSGPLANEVAKAVVGKELK-PRLANYLPFMDTDGTVLDQGIALFFKAPNSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQVILDLLLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S+   + +D + ++R+++EA +DF +EE +   +  ++   LND
Sbjct: 126 SEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLND 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+     +++   + K G I+R G K+V+ G  NAGKSSL NALA ++ AIVT+I GTTR
Sbjct: 185 II---TQLANVRKEAKQGSILREGMKVVMPGKPNAGKSSLLNALAGREAAIVTNIAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           DVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL+ + + ++   
Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQADV 301

Query: 316 F-----------PKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTGEGLEELINKI 358
           F           P+NI    I  K DL   S   E+ D      +S+ T  G++ L   +
Sbjct: 302 FKTEWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTLIRLSAQTKVGVDLLREHL 361

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416
           K  +  +         + +RHL  L     +LE     L +   G +++AE LR+   +L
Sbjct: 362 KQSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAG-ELLAEELRMVQNAL 419

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 420 SEITGQFTSDDLLGNIF 436


>gi|255713564|ref|XP_002553064.1| KLTH0D08074p [Lachancea thermotolerans]
 gi|238934444|emb|CAR22626.1| KLTH0D08074p [Lachancea thermotolerans]
          Length = 497

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 159/480 (33%), Positives = 260/480 (54%), Gaps = 51/480 (10%)

Query: 7   TIFAVSTG-ALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFF---GLDGRIL 61
           TI+A+ST     SAI+++R++G  C  +  +    +  P PR+ SLR  +   G    +L
Sbjct: 23  TIYALSTSPGQRSAIAVVRVTGSHCKHIYYQLTGAQSPPVPRRCSLRNLYHAAGAKKNLL 82

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFSR 115
           D  L++ F +P+SFTGED  E H+HGG AV+  +L  +  + +      +R A PGEFS+
Sbjct: 83  DSSLVLFFENPKSFTGEDMLELHLHGGRAVIKSVLGAIQSLGDQKKGLDIRYAQPGEFSQ 142

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF+NG++DL +AE +ADLI +ETE QRR +++   G+  +L+  W  ++    + + A 
Sbjct: 143 RAFQNGRMDLTQAEGVADLIDAETETQRRSALQSFRGQNKALFDGWRSQIVSGIAQLTAI 202

Query: 176 LDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           +DF E+ ++++  +    V  +++ L  +I   + + +   I++NG K+ +LG  NAGKS
Sbjct: 203 IDFGEDAEIEDTQAILDSVRRNMMNLDKEIKLFVLKIRRSSILQNGVKVALLGSPNAGKS 262

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRT 292
           SL N +   D +IV+D PGTTRD + + +D++GY V + DTAGIR E++D +E +GIKR 
Sbjct: 263 SLLNCITNDDTSIVSDTPGTTRDAIDVPIDVDGYKVVLCDTAGIRSESEDQIEIQGIKRA 322

Query: 293 FLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDLYST------YT 336
             +   +DL++L+ +      ++           P N   I +  K+DL  T        
Sbjct: 323 KAKGSESDLVILVIDPTKTPLVTEDLQRFVKEQIPHNQVIIAV-NKTDLVDTKGLKNVRQ 381

Query: 337 EEY-----DHLISSFTGEGLEELINKIKSILSNKFKKL--------PFSIPSHKRHLYHL 383
           E Y     D  I S +    E + N +K  LS+ F+ L        P  + +    +   
Sbjct: 382 EVYQIFNGDFPIKSVSCTNFEGIENLVKE-LSHVFQGLSGTSHDSDPLIVSNRTEEILTK 440

Query: 384 SQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
                  E  S    +   D++   ENL  A+  +GKITG  V VE++L ++FS+FC+GK
Sbjct: 441 DVMFGLQEFLSFPGTE---DVVMACENLAYAAEGIGKITGASVGVEEVLGVVFSRFCVGK 497


>gi|302393075|ref|YP_003828895.1| tRNA modification GTPase trmE [Acetohalobium arabaticum DSM 5501]
 gi|302205152|gb|ADL13830.1| tRNA modification GTPase trmE [Acetohalobium arabaticum DSM 5501]
          Length = 463

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 263/466 (56%), Gaps = 36/466 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGLDG----- 58
           K+TI A+ST      I I+R+SGP   ++ + I K  ++P  +   +  +    G     
Sbjct: 4   KDTIAAISTAVGEGGIGIVRISGPEAIEIADKIFKSYQQPDKKLNKVDTYTAHYGHIIKP 63

Query: 59  ---RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
              ++LD+ + +V  +P+++T ED  E + HGG+  +  ILE L      RLA+PGEF++
Sbjct: 64  ETEQVLDEVISLVMKAPKTYTKEDVVEINCHGGMVPLQKILE-LVLDVGARLADPGEFTK 122

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I+S+TE     +M+ + G LS        K+  + + +EA 
Sbjct: 123 RAFLNGRIDLSQAEAIMDVINSQTEAGLEAAMDQLEGGLSDQINNISQKILRLLANLEAS 182

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF E+E +++F+S+E+   ++ + ++I   ++  K G I++ G +  I+G  N GKSSL
Sbjct: 183 IDFPEDE-IEDFNSEELEKRVIEILSEIEDLLATSKQGRIVKEGIQTAIIGKPNVGKSSL 241

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL +++ AIVT++PGTTRDV+   ++++G  +KI DTAGIRE ++ VEK GI+++   
Sbjct: 242 LNALLRENRAIVTEVPGTTRDVIEEVINIDGIPLKIIDTAGIREAENEVEKIGIEKSEKF 301

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYD--HL 342
           ++ ADL+LL+ + +       +K I   +  D I +  K+DL          EE D   +
Sbjct: 302 LKRADLVLLVLDAHCGITDEDRKIIGLAEGKDTIIVVNKTDLEPKLAVEELKEELDMEAV 361

Query: 343 ISSFTGEG-----LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
           + +   EG     LEELI+ +  +   + K    ++ ++ RH   +     Y +M  +  
Sbjct: 362 VETSATEGIGIKELEELISDM--VFGGQIKSTDQTLITNLRHKEAIEDA--YEDMNRVKE 417

Query: 397 --EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E+D   D +  +L+ A   LGKITG    E ++D IF+ FC+GK
Sbjct: 418 TVEQDLPADFVTIDLKSALEKLGKITGDTVDEDIIDRIFADFCLGK 463


>gi|28209869|ref|NP_780813.1| tRNA modification GTPase TrmE [Clostridium tetani E88]
 gi|32171803|sp|Q899S2|MNME_CLOTE RecName: Full=tRNA modification GTPase mnmE
 gi|28202304|gb|AAO34750.1| thiophene and furan oxidation protein thdF [Clostridium tetani E88]
          Length = 459

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 162/459 (35%), Positives = 257/459 (55%), Gaps = 28/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFFGLD 57
           +TI A+ST      ISIIR+SG     +   + K K        KP+  K    +    D
Sbjct: 5   DTIAAISTVLGEGGISIIRISGDKSLAIVNKLFKAKNGKDILDMKPYTMKYG--HIIEQD 62

Query: 58  GR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            + ILD+ L+    +P SFT ED+ E + HGG+     I +E+ K   +R+A PGEF++R
Sbjct: 63  TKNILDEVLISYMKAPRSFTAEDTVEINCHGGVTPTKKIFQEVIK-AGVRVAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ D+I S+TE+  + ++    G++S       + L    + IEA +
Sbjct: 122 AFLNGRIDLTQAEAVIDIIRSKTELSMKSAVSQSIGKVSEEINVLRENLIETIAHIEATV 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ EE D++  +S +V   I  +  ++   +   + G+IIR G  +VI+G  N GKSSL 
Sbjct: 182 DYPEE-DLEEITSSQVQEKIEKIIEELERLLDTSEEGKIIREGLDVVIVGKPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  +  AIVT+IPGTTRDV+   ++L+G  +KI DTAGIRET+D+VEK G++R+  ++
Sbjct: 241 NALLSEKRAIVTEIPGTTRDVIEEYINLDGIPIKIIDTAGIRETEDLVEKIGVERSKEKI 300

Query: 297 ENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE-------YDHL- 342
             ADL++L+ + ++K      + I + K+  +I +  KSDL S   +        Y+ + 
Sbjct: 301 NEADLVILVLDSSNKLNDEDYEIIEYIKDKKYITLLNKSDLESKINKSDLEDLKLYNIIE 360

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           IS+  G GLE+L   IK +      +    I ++ RH   L +       A    E    
Sbjct: 361 ISAKMGFGLEDLKEYIKDLFFKGDIQTDSIIITNTRHKEALIRAKESCNTALKALENTLA 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D+ + +++ A +SLG+ITG    E ++D IFS+FC+GK
Sbjct: 421 IDLASIDIKNAWLSLGEITGDTLEEDIIDKIFSEFCLGK 459


>gi|16804848|ref|NP_466333.1| tRNA modification GTPase TrmE [Listeria monocytogenes EGD-e]
 gi|47095618|ref|ZP_00233226.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224502775|ref|ZP_03671082.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-561]
 gi|254899731|ref|ZP_05259655.1| tRNA modification GTPase TrmE [Listeria monocytogenes J0161]
 gi|254913066|ref|ZP_05263078.1| tRNA modification GTPase trmE [Listeria monocytogenes J2818]
 gi|254937447|ref|ZP_05269144.1| tRNA modification GTPase TrmE [Listeria monocytogenes F6900]
 gi|255028100|ref|ZP_05300051.1| tRNA modification GTPase TrmE [Listeria monocytogenes LO28]
 gi|21363006|sp|Q8Y3M4|MNME_LISMO RecName: Full=tRNA modification GTPase mnmE
 gi|16412311|emb|CAD01024.1| lmo2811 [Listeria monocytogenes EGD-e]
 gi|47016048|gb|EAL06973.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258610049|gb|EEW22657.1| tRNA modification GTPase TrmE [Listeria monocytogenes F6900]
 gi|293591067|gb|EFF99401.1| tRNA modification GTPase trmE [Listeria monocytogenes J2818]
          Length = 457

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 150/461 (32%), Positives = 249/461 (54%), Gaps = 29/461 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEYDHL---------- 342
            ILL+  +N  +E++             +++ +  K+DL +    + D +          
Sbjct: 301 FILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKL--DIDRVRELAGENPIV 356

Query: 343 -ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
             S    EGLE L   IK++  +        +  S+ RH+  L Q +  L   +   +  
Sbjct: 357 STSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 417 MPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|217965982|ref|YP_002351660.1| tRNA modification GTPase TrmE [Listeria monocytogenes HCC23]
 gi|226225361|ref|YP_002759468.1| GTPase [Listeria monocytogenes Clip81459]
 gi|254824824|ref|ZP_05229825.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-194]
 gi|254930915|ref|ZP_05264274.1| tRNA modification GTPase TrmE [Listeria monocytogenes HPB2262]
 gi|284800302|ref|YP_003412167.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5578]
 gi|284993487|ref|YP_003415255.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5923]
 gi|217335252|gb|ACK41046.1| tRNA modification GTPase TrmE [Listeria monocytogenes HCC23]
 gi|225877823|emb|CAS06538.1| Putative GTPase [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|284055864|gb|ADB66805.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5578]
 gi|284058954|gb|ADB69893.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5923]
 gi|293582461|gb|EFF94493.1| tRNA modification GTPase TrmE [Listeria monocytogenes HPB2262]
 gi|293594064|gb|EFG01825.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-194]
 gi|307572401|emb|CAR85580.1| tRNA modification GTPase [Listeria monocytogenes L99]
 gi|328469044|gb|EGF39998.1| tRNA modification GTPase TrmE [Listeria monocytogenes 220]
 gi|332313241|gb|EGJ26336.1| tRNA modification GTPase mnmE [Listeria monocytogenes str. Scott A]
          Length = 457

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 251/459 (54%), Gaps = 25/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYS----TYTEEY---DHLISS 345
            ILL+  +N  +E++             +++ +  K+DL +        E    + ++S+
Sbjct: 301 FILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVRELAGENPIVST 358

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
                EGLE L   IK++  +        +  S+ RH+  L Q +  L   +   +    
Sbjct: 359 SLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 419 VDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|150021216|ref|YP_001306570.1| tRNA modification GTPase TrmE [Thermosipho melanesiensis BI429]
 gi|205829182|sp|A6LMN4|MNME_THEM4 RecName: Full=tRNA modification GTPase mnmE
 gi|149793737|gb|ABR31185.1| tRNA modification GTPase TrmE [Thermosipho melanesiensis BI429]
          Length = 441

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 252/445 (56%), Gaps = 16/445 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI AVS+     AI++IR+ GP    + + +    K   R+    Y    +G ILD+  
Sbjct: 3   DTIAAVSSPHGTGAIAVIRIDGPKSHDIAKKLTGLNKVEYRRVYTTYL-NFEGDILDQVN 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F SP S+TG D  E + HGGI V   +L+ + K    R+A  GEF++R F NGKI L
Sbjct: 62  IVFFKSPNSYTGNDLIEIYTHGGILVTQNVLDAILK-SGARIAKRGEFTKRGFLNGKISL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++  +I +++E+  ++S++ + G+L      +  ++ ++ S IE   D+ +  D++
Sbjct: 121 VQAEAIYQIIEAKSEVSLKMSLQNLKGKLGEEIEYYRGEILNVLSEIEVTFDYPD--DIE 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
               K +LN +  LK+++   I   K   ++ NG  + I+G  N+GKS+L N L  +D A
Sbjct: 179 -LDEKSILNLLSKLKDEVGRKIEDSKKSIMLNNGIVMTIVGKPNSGKSTLLNRLLLEDRA 237

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDIPGTTRDV+  ++++ G    I DTAGIRET D+VEK GI+R+  E++ AD+IL +
Sbjct: 238 IVTDIPGTTRDVIKGEIEINGIRFVIVDTAGIRETKDVVEKIGIERSLKEIQKADVILFV 297

Query: 306 KEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDH--LISSFTGEGLEELINK 357
            +     +K++    + I   ++I +  K D  + + + +D    IS+  GEGL+ L NK
Sbjct: 298 LDATTGFTKEDKLILRKIEGGNYIPVWNKCDEGNNFNKIFDGEIKISALNGEGLKNLENK 357

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVS 415
           I S + N  +    S    +R +  L +   +LE A +N  + G  +D+I+ +LR A   
Sbjct: 358 IVSKVKNIIESGTASHVITQRQVEILERVYTHLESA-VNNLNMGYEIDLISIDLRRALEE 416

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           L  + G    + LLD IFS FC+GK
Sbjct: 417 LDMLIGRKFSDDLLDNIFSNFCVGK 441


>gi|16802002|ref|NP_472270.1| tRNA modification GTPase TrmE [Listeria innocua Clip11262]
 gi|21363013|sp|Q926U7|MNME_LISIN RecName: Full=tRNA modification GTPase mnmE
 gi|16415484|emb|CAC98168.1| lin2943 [Listeria innocua Clip11262]
          Length = 457

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 251/459 (54%), Gaps = 25/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYS----TYTEEY---DHLISS 345
            ILL+  +N  +E++             +++ +  K+DL +        E    + ++S+
Sbjct: 301 FILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVRELAGENPIVST 358

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
                EGLE L   IK++  +        +  S+ RH+  L Q +  L   +   +    
Sbjct: 359 SLVNDEGLEALEEAIKALFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 419 VDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|254851886|ref|ZP_05241234.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-503]
 gi|254992368|ref|ZP_05274558.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-064]
 gi|300763431|ref|ZP_07073429.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N1-017]
 gi|258605181|gb|EEW17789.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-503]
 gi|300515708|gb|EFK42757.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N1-017]
          Length = 457

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 251/459 (54%), Gaps = 25/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYS----TYTEEY---DHLISS 345
            ILL+  +N  +E++             +++ +  K+DL +        E    + ++S+
Sbjct: 301 FILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVRELAGENPIVST 358

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
                EGLE L   IK++  +        +  S+ RH+  L Q +  L   +   +    
Sbjct: 359 SLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHITLLHQALEALNGVTTGIQLGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 419 VDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|194246565|ref|YP_002004204.1| tRNA modification GTPase TrmE [Candidatus Phytoplasma mali]
 gi|193806922|emb|CAP18351.1| tRNA modification GTPase [Candidatus Phytoplasma mali]
          Length = 452

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 155/451 (34%), Positives = 255/451 (56%), Gaps = 18/451 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLDGRILD 62
           +TI A+ T      +SIIR+SG    +    I K K   K      +  +    D  ILD
Sbjct: 4   DTIAAIITPFGTGGVSIIRISGTKTIEEIRKIFKGKNLNKMNSHTITHGFILNKDNIILD 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+ +F +P+SFTGED  E H HGGI +   +LE + ++ N+R++ PGEFS+RA+ N K
Sbjct: 64  EVLISLFKNPKSFTGEDVIEIHTHGGILITQMVLERILEL-NIRMSLPGEFSQRAYLNRK 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AES+ DLI ++ E   +++  G+  + S L  Q  +K+ ++ S IE ++D+ E E
Sbjct: 123 IDLIQAESIMDLIYAKNENAIKIANLGLQKKTSQLVIQLREKILNLISQIEVNIDYPEYE 182

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D    S + +L     L  +I + +        ++ G + +I+G  N GKSSL N   ++
Sbjct: 183 DTTVMSKENILPQTKLLIKEIKNVLKYSYKTRYLKEGVETLIIGRPNVGKSSLLNFFLEE 242

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + +IV+DIPGTTRD + +  +L+G  + + DTAG+RE +D +EK G+ +T   ++ A+L+
Sbjct: 243 ERSIVSDIPGTTRDFVDVYFNLQGITLHLIDTAGVREAEDKIEKIGVLKTKQLLKKAELV 302

Query: 303 LLLKEINS------KKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFTGEGL 351
           LL+ + N+      K+ ++  K+   I IG KSDL +       TEE    IS+   +GL
Sbjct: 303 LLVLDQNNCLQSEDKELLNLTKDYPRILIGNKSDLKTKIEKQQLTEEI-IFISTIEKKGL 361

Query: 352 EELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENL 409
           E L N I  IL  +  K+  F+  S+ RH+  + + + +LE AS + + +  +DI  ++ 
Sbjct: 362 ELLKNNILKILKLDVIKEKDFNYFSNTRHIQQIKKALCFLEDASNSLQNNIPVDICVDDF 421

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +   LG I G    + L+  +FSKFC+GK
Sbjct: 422 KKSYEFLGLILGECQTDDLIKNLFSKFCLGK 452


>gi|284038159|ref|YP_003388089.1| tRNA modification GTPase TrmE [Spirosoma linguale DSM 74]
 gi|283817452|gb|ADB39290.1| tRNA modification GTPase TrmE [Spirosoma linguale DSM 74]
          Length = 458

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 152/464 (32%), Positives = 258/464 (55%), Gaps = 33/464 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGR 59
           ++ E I A++T     AI+++R+SG    ++   + + K    + +   +F  L   DG 
Sbjct: 2   YQLEPIAALATAPGIGAIAVVRVSGEGAIELTNRLFRGKDLTQQTSHTAHFGTLRNEDGS 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L  VF +P+SFT ED  E   HG   ++  IL  L +   +RLA PGEF++RAF 
Sbjct: 62  IIDEVLATVFRAPKSFTKEDVVEISCHGSEFIIQQILRRLMQ-EGVRLARPGEFTQRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+ DL++AE++ADLI+S+++   R ++  + G  S    +   +L    + +E +LDF 
Sbjct: 121 NGQFDLVQAEAVADLIASDSDASHRAALTQLRGGFSKQLKELRQQLIDFVALVELELDFG 180

Query: 180 EEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           EE DV+ F+ ++ L  ++  ++  +   I     G  I+NG   VI+G  NAGKS+L NA
Sbjct: 181 EE-DVE-FAHRDRLRQLMLDIRRVLHPLIESFSTGNAIKNGVPTVIVGKPNAGKSTLLNA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIV+DIPGTTRDV+  +L ++G   ++ DTAG+R+  D +E  GI+RT  ++ +
Sbjct: 239 LLNEEKAIVSDIPGTTRDVIEDELFIDGIRFRLIDTAGLRQATDRIEAIGIERTQQKMRD 298

Query: 299 ADLILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
           A L++ L +  + K       +D        ++ +G K D  +  T E    + +  GE 
Sbjct: 299 ASLVVYLFDAKNVKADELQTAVDEVRASRKPYLLVGNKLDAITDTTRES---LETMLGES 355

Query: 351 L-------EELINKIKSILSNKFK-----KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           +       +  ++++K+ LS + +     +   ++ ++ RH  HL+ T   L  A ++  
Sbjct: 356 VVWISAANQTHLDELKAALSARVRTDAAVQTGSAVVTNSRHYNHLTGTDEALARA-IHGL 414

Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  +  D +A +LR+A   LG++TG +  + LLD IFSKFCIGK
Sbjct: 415 DTSVTPDWLAMDLRVALQHLGELTGEITTDDLLDSIFSKFCIGK 458


>gi|284929261|ref|YP_003421783.1| tRNA modification GTPase trmE [cyanobacterium UCYN-A]
 gi|284809705|gb|ADB95402.1| tRNA modification GTPase trmE [cyanobacterium UCYN-A]
          Length = 457

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 165/465 (35%), Positives = 253/465 (54%), Gaps = 33/465 (7%)

Query: 1   MNHEKETIFAVSTGALP--SAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFF-- 54
           M     TI A++T  +P   ++ I+RLSG   + + +  FI   K+ +     L  +   
Sbjct: 1   MIRSGRTIAAIATAVVPEEGSVGIVRLSGDKAYAIAKKIFIAPGKQQWESHKVLYGYIHS 60

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             D RI+D+ LLI+  +P S+T ED  EFH HGGI VV  +L+   K   + LA  GEF+
Sbjct: 61  SKDSRIIDEALLILMLAPRSYTREDIVEFHCHGGIIVVQQVLQLCIKEGAI-LAEHGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF NG+IDL +AES+++++ +++ +  +++M G+ G+LS+           + S IE+
Sbjct: 120 LRAFLNGRIDLTQAESISEIVGAKSPLASQIAMAGIQGKLSNPIKNLRLDCLELLSEIES 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF  EED+   S   +L  I    + +   +S  K GE++R+G KI ILG  N GKSS
Sbjct: 180 RIDF--EEDLPPLSQVVILQKIQDFLHRVKKLLSTSKTGELLRSGLKIAILGRPNVGKSS 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N+ ++ + AIVTD+PGTTRD++  +L ++   +K+ DTAGIR TD+ +EK G++RT L
Sbjct: 238 LLNSWSRSNKAIVTDLPGTTRDIVESNLIIKNIPIKVLDTAGIRHTDNQIEKIGVQRTHL 297

Query: 295 EVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDL----YSTYTEEYDH 341
               ADLILL          +E    K+I   K++  I I  K DL     S    E   
Sbjct: 298 AANQADLILLTIDAQIGWTEEETEIYKKI---KHLPIILIVNKIDLNVPDLSIIPSEIQE 354

Query: 342 L--ISSFTGEGLEELINKIKSILSNK---FKKLPFSIPSHKRHLYHLSQT-VRYLEMASL 395
           +  IS+    G++ +   I + +  K    K + F+I  ++R L  L +  + + ++   
Sbjct: 355 VIKISAIQNLGIDSIEEAILNFIYKKNLIAKNVDFTI--NQRQLEILIRVKIAFEDIIKT 412

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +  LD I  +LR A   LG+ITG    E LL  IFS FCIGK
Sbjct: 413 INNELPLDFITIDLRSAIKILGEITGDEVTESLLSKIFSTFCIGK 457


>gi|198282180|ref|YP_002218501.1| tRNA modification GTPase TrmE [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667012|ref|YP_002424545.1| tRNA modification GTPase TrmE [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198246701|gb|ACH82294.1| tRNA modification GTPase TrmE [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519225|gb|ACK79811.1| tRNA modification GTPase TrmE [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 451

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 249/454 (54%), Gaps = 22/454 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPF-PRKASLRYFFGLDGR 59
            + +TI A++T      + I+R SGP    +   +C ++  KP  PR A  R F+  DG 
Sbjct: 4   QQGDTIVAIATPPGEGGVGILRFSGPQAPSIATALCGRRSAKPLTPRHAHFRRFYARDGS 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D G+++ FP+P S+TGE   E   HG    +  +L E   +        GEFS RAF 
Sbjct: 64  LIDHGIVLYFPAPNSYTGETVVELQGHGSPLALASLLTEAIALGARAARA-GEFSERAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++ADLI + ++ Q R +   + G  S        +L  + +  EA LDFS
Sbjct: 123 NGRLDLAQAEAVADLIHARSDAQARAAAASLEGAFSQAVDDIHGQLLRLLALAEAGLDFS 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE D+ +  ++ + + ++ L   ++  + Q + G  +  G ++V+ G  N GKSSL NAL
Sbjct: 183 EE-DLGDAHAQAISDSLVRLDAQVAHLLKQAQQGARLARGGRVVLAGRPNVGKSSLMNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A+++ AIVT IPGTTRD+L  ++ L G  V++ DTAG+RE  D VE EG+ R    + +A
Sbjct: 242 ARRESAIVTAIPGTTRDLLREEIILGGLPVELVDTAGLREATDAVEAEGVARARNILHSA 301

Query: 300 DLILLLKEIN----SKKEI---SFPKNIDFIFIGTKSDLYS----TYTEEYDHLISSFTG 348
            LILL+ + +    S+ E+     P+    I I  K DL S    T T E    +S+ TG
Sbjct: 302 QLILLVADASTGWQSEDEVILRDLPEGPRRI-IWNKMDLVSAPPATPTGEEAITLSAQTG 360

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
            GL+ L   +   L  +    PFS  + +RH+  L      L +A  +L   D   +++A
Sbjct: 361 AGLDTLHCSLIEALGVQGDSCPFS--ARRRHVEALESCAHRLGIAGDTLRLGDA-PELVA 417

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++LR A+ +L  ITG +DVE +L  IFS+FCIGK
Sbjct: 418 QSLREAAAALAGITGHMDVEDILGEIFSRFCIGK 451


>gi|119486976|ref|ZP_01620848.1| tRNA modification GTPase [Lyngbya sp. PCC 8106]
 gi|119455905|gb|EAW37039.1| tRNA modification GTPase [Lyngbya sp. PCC 8106]
          Length = 469

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 159/467 (34%), Positives = 254/467 (54%), Gaps = 38/467 (8%)

Query: 6   ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56
           ETI A++T  +P   +I I+RLSG     + +  F    ++P+    S R  +G      
Sbjct: 9   ETIVAIATAIVPQQGSIGIVRLSGSQAIAIAKLLFAAPGRQPWE---SHRILYGYIRHPQ 65

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ R
Sbjct: 66  TQQVVDEALLLLMLAPRSYTREDVVEFHCHGGIIAVQQVLQ-LCLEAGARLAQPGEFTLR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AES+A+L+ S+++     ++ G+ G+L++   Q       + + IEA +
Sbjct: 125 AFLNGRIDLTQAESIAELVGSQSQAAALAAIAGLQGKLATPIRQLRATCLDVLAEIEARI 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF  EED+   +  E+++ +  +  ++S  I   + GE +R+G K+ I+G  N GKSSL 
Sbjct: 185 DF--EEDLPPLNVPEIVSQVNQISAELSILIETAEKGERLRSGLKVAIVGRPNVGKSSLL 242

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NA ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIR ++D VEK GI+R+    
Sbjct: 243 NAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRNSEDQVEKIGIERSQTAA 302

Query: 297 ENADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSDLYS-----TYTEEY------ 339
           + ADL+LL  +       S +EI    ++   I I  K D  S        EE       
Sbjct: 303 KLADLVLLTIDAEAGWTESDEEIYQQVQHRPLILILNKIDRVSANELDAKVEEILAKLNR 362

Query: 340 DHLISSFTGEGLEELINKIKS-----ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
           ++L++  T   L + I ++++     I +   +     I  ++R    +++  + L+   
Sbjct: 363 ENLLTVKTAAALNQGITELETAILTAINAGNLQAKNLDIAINQRQASVITRAKKALDQMK 422

Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  E    LD    +LR A  +LG++TG    E +LD IFS+FCIGK
Sbjct: 423 ITIENQLPLDFWTIDLREAIQALGEVTGEEVTESVLDRIFSRFCIGK 469


>gi|313900904|ref|ZP_07834394.1| tRNA modification GTPase TrmE [Clostridium sp. HGF2]
 gi|312954324|gb|EFR36002.1| tRNA modification GTPase TrmE [Clostridium sp. HGF2]
          Length = 443

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 154/451 (34%), Positives = 257/451 (56%), Gaps = 27/451 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRILD 62
           +TI A+ST A+  AISIIR+SG     + + I        +  ++ Y +  D     ++D
Sbjct: 4   DTIAAISTAAVDGAISIIRMSGADALSIADSILNFNVGEKKSHTISYGYVYDQEHDELID 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+ VF +P++FT ED  E + HGG  +   IL  L      RLANPGEF++RAF NG+
Sbjct: 64  EVLVSVFRAPKTFTCEDIVEINCHGGRFITKKILR-LCLAHGARLANPGEFTQRAFLNGR 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AE++ D+I ++T+   R++++G+ G +  L    I  L  I + IE ++D+ E +
Sbjct: 123 IDLTQAEAVNDMIQADTDENARMAVQGIRGSVRKLLEPLIQDLLDIIANIEVNIDYPEYD 182

Query: 183 DVQNFSSKEVLNDILFLKND-----ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           DV+  SS     DI+  K +     I   + + + G++++ G K  I+G  N GKSSL N
Sbjct: 183 DVEQLSS-----DIIQPKAEEWMMRIRQILDRAQSGQLLKEGIKTAIVGKPNVGKSSLLN 237

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL +++ AIVTDI GTTRD++   + L+G  + + DTAGIR+T+D+VE+ GI+R+   + 
Sbjct: 238 ALLEEEKAIVTDIAGTTRDIVEGHIHLQGLTLNLIDTAGIRDTEDVVEQIGIRRSLQAIS 297

Query: 298 NADLILLLKE----INSKKE--ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            A L++++ +    ++++ E  +   K+   I +  K+D+ S   E     IS+ +GE +
Sbjct: 298 EAQLVIVVLDSSHALDAQDEELLELTKDKTRIIVYNKTDI-SHRCEGI--CISAASGE-I 353

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRH--LYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           E L+ KI  +       L   +  ++R   L   +++     +A++  K   LDI+A ++
Sbjct: 354 EPLMAKIHELFDGHQLVLQEPLLQNERQISLMMKAESCMRQALAAMKSK-MELDIVAIDI 412

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + A  +L +I G V  E LLD +FS FC+GK
Sbjct: 413 QEAYTALKEILGEVHREDLLDTLFSNFCLGK 443


>gi|255026481|ref|ZP_05298467.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-003]
          Length = 457

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 251/459 (54%), Gaps = 25/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYS----TYTEEY---DHLISS 345
            ILL+  +N  +E++             +++ +  K+DL +        E    + ++S+
Sbjct: 301 FILLV--LNQSEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVRELAGENPIVST 358

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
                EGLE L   IK++  +        +  S+ RH+  L Q +  L   +   +    
Sbjct: 359 SLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 419 VDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|254830753|ref|ZP_05235408.1| tRNA modification GTPase TrmE [Listeria monocytogenes 10403S]
          Length = 457

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 251/459 (54%), Gaps = 25/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYS----TYTEEY---DHLISS 345
            ILL+  +N  +E++             +++ +  K+DL +        E    + ++S+
Sbjct: 301 FILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVRELAGENPIVST 358

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
                EGLE L   IK++  +        +  S+ RH+  L Q +  L   +   +    
Sbjct: 359 SLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 419 VDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|172059049|ref|YP_001815509.1| tRNA modification GTPase TrmE [Exiguobacterium sibiricum 255-15]
 gi|205829139|sp|B1YGA8|MNME_EXIS2 RecName: Full=tRNA modification GTPase mnmE
 gi|171991570|gb|ACB62492.1| tRNA modification GTPase TrmE [Exiguobacterium sibiricum 255-15]
          Length = 460

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 149/459 (32%), Positives = 255/459 (55%), Gaps = 23/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDG 58
           E +TI A+ST     AI+I+RLSGP   +  + + +         +    +G        
Sbjct: 3   EFDTIAAISTPMGEGAIAIVRLSGPKAVETADRVYRGANRLTDVPTHTIHYGKLVEQTTE 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ ++ V  +P++FT ED  E + HGGI  VN +LE + + P++RLA PGEF++RAF
Sbjct: 63  QVVDEVMVSVMRAPKTFTREDVVELNCHGGIVAVNRVLELILEQPDVRLAEPGEFTKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  + G LS L     ++L    + IE ++D+
Sbjct: 123 LNGRIDLSQAEAVMDLIRAKTDRAMTVAVGQIEGRLSKLVQDLREQLLQTIASIEVNIDY 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
             E D +  + + V  D   ++  ++  ++  + G+I+R G    I+G  N GKSSL N 
Sbjct: 183 P-EYDAEEMTQQIVQKDAGEVRRILTELLATARQGKILREGLSTAIIGRPNVGKSSLLNT 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRD +   +++ G  +K+ DTAGIRET+DIVE+ G++++   + +
Sbjct: 242 LVQEAKAIVTDIAGTTRDTIEEYVNVRGVPLKLIDTAGIRETEDIVERMGVEKSRQALNS 301

Query: 299 ADLILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYS----TYTEEYDHLISSFTG 348
           ADLILL+   N   +++++      + ++ I I  KSDL      T   E        T 
Sbjct: 302 ADLILLVLNGNDALTEEDVLLFEAIRGMNAIIIVNKSDLTQAIDLTRVSELADGRPVVTT 361

Query: 349 EGLEEL-INKIKSILSNKF-----KKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
             LEE  +  +++ +++ F     +    +  S+ RH+  + Q  + +E A    E    
Sbjct: 362 SLLEEAGVTDLEAAIASLFFEQGVEGQDMTYVSNARHIQLIKQASQMIEDALGAAEASMP 421

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +LR A  +LG+I G    + LLD +FS+FC+GK
Sbjct: 422 IDMVQIDLRRAWDTLGEINGDTAQDSLLDKLFSQFCLGK 460


>gi|121703576|ref|XP_001270052.1| mitochondrial GTPase (Mss1), putative [Aspergillus clavatus NRRL 1]
 gi|119398196|gb|EAW08626.1| mitochondrial GTPase (Mss1), putative [Aspergillus clavatus NRRL 1]
          Length = 572

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 128/324 (39%), Positives = 193/324 (59%), Gaps = 27/324 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR-----I 60
           TI+A+ST    +AI+++RLSGP+C QV   +C   + P PR A++R  +    +     +
Sbjct: 36  TIYALSTAPGRAAIAVVRLSGPACVQVYHALCPNARLPRPRIAAVRTVYDPTQKPSANTV 95

Query: 61  LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM--PN---LRLANPGEFS 114
           LD G L++ FP P++ TGED  EFH+HGG A+V  +L  +A+   P+   +R A PGEF+
Sbjct: 96  LDTGALVLYFPGPKTVTGEDVLEFHLHGGPAIVRSVLAAIARTSRPDESLVRYAEPGEFT 155

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAF N ++ L + E+L D ++++TE QRRL++ G S  LS  Y  W  +L + R  +EA
Sbjct: 156 RRAFMNNRLGLPQIEALGDTLTADTEQQRRLAVRGASDALSKRYELWRQQLLYARGELEA 215

Query: 175 DLDFSE-----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
            +DFSE     E  V+  SS  V   +  L+  +  H+     GE++RNG KI +LG  N
Sbjct: 216 LIDFSEDQHFDESPVELISSVAV--QVRALQAQLKLHVENASKGELLRNGIKIALLGAPN 273

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD------- 282
           AGKSSL N +  K+ AIV+   GTTRD++ + +D+ G+  K+ D AGIR  +        
Sbjct: 274 AGKSSLLNRVVGKEAAIVSTEEGTTRDIVDVGVDVGGWYCKLGDMAGIRSENSSQRTVVI 333

Query: 283 -IVEKEGIKRTFLEVENADLILLL 305
             VEKEGI+R       +D+I+++
Sbjct: 334 GAVEKEGIRRARARALESDVIVVV 357


>gi|240047711|ref|YP_002961099.1| tRNA modification GTPase TrmE [Mycoplasma conjunctivae HRC/581]
 gi|239985283|emb|CAT05296.1| tRNA modification GTPase mnmE [Mycoplasma conjunctivae]
          Length = 440

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 155/447 (34%), Positives = 254/447 (56%), Gaps = 22/447 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64
           +TI A+++G +  AISIIR+SG + FQ+ E I   K    +   + Y +  D G+ +D+ 
Sbjct: 4   DTIVAIASGQVNQAISIIRISGDNAFQIMEQIFSGK--IGKSQQITYGWIHDKGQKIDEV 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F   ++F G+ + E + HGG+   N ILE +      RLANPGEFS R+F NGK+D
Sbjct: 62  LVLWFEGSKNFVGQPTVEINAHGGVLNTNIILELILSTKLARLANPGEFSMRSFLNGKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++A+++ DLI ++T  Q  L+++   G  S    + I  L  I   IE ++D+ E +DV
Sbjct: 122 LVKAQAINDLIHAQTRSQHSLALKQFEGHTSKYISELIVDLEAIIGIIEVNIDYPEYDDV 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +S+ +L  I  L+   ++ + +     +I  G K+ I+G  N+GKSSL NAL K++ 
Sbjct: 182 EEMTSQILLPTIDKLEQKFANLLERANRSRLIFEGIKVTIVGVPNSGKSSLLNALLKENK 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV++I GTTRDV+  +  ++  L K+SDTAGIR+  D +E+ GI++ F ++   DLI+ 
Sbjct: 242 AIVSEIAGTTRDVVEGNFQIDNILFKVSDTAGIRKAKDQIEQIGIQKAFEQISKNDLIIH 301

Query: 305 LKEINSKK-------EI-SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           +  I+S+K       EI S   N  +I +  K+DL     ++ + +  S   + +E LI+
Sbjct: 302 V--IDSQKGFDKTDQEIASTITNQVYIQVYNKADLIE--AKQKNQIYISAKNDEIETLIS 357

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQ---TVRYLEMASLNEKDCGLDIIAENLRLAS 413
           +IK      F ++     S+ R +  +     +++  ++A LN  + G D+   ++R A 
Sbjct: 358 EIKK--KYHFLQIDDDFVSNTRQISQIRMALISLKEAKIALLN--NLGPDVAIVDIRQAW 413

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L  I G  D E LLD IFS FC+GK
Sbjct: 414 KDLKSILGQADDEDLLDSIFSNFCLGK 440


>gi|217077738|ref|YP_002335456.1| tRNA modification GTPase TrmE [Thermosipho africanus TCF52B]
 gi|217037593|gb|ACJ76115.1| tRNA modification GTPase TrmE [Thermosipho africanus TCF52B]
          Length = 441

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 153/444 (34%), Positives = 251/444 (56%), Gaps = 14/444 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A+S+     AIS++R+ GP    + + + K      R+     F   +G+I+D+  
Sbjct: 3   DTIAAISSPLGTGAISVVRIDGPKSHDIAKKLVKISNVDYRRV-YHAFMEFEGQIVDEVN 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ + SP S+TG D  E + HGGI V   +LE + K    RLA  GEF++RAF NGKI L
Sbjct: 62  IVFYKSPNSYTGNDLVEIYGHGGILVTRKVLEAVLK-SGARLAERGEFTKRAFLNGKISL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AES+  +I +++E+  +LS E + G+LS     +  +L +I + IE  +D+ ++ +V 
Sbjct: 121 VQAESIYQIIEAKSEISLKLSFENLKGKLSEEIENYRSRLLNILAEIEVSIDYPDDMEV- 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +F +  + N +  +  ++S  I   K    +  G  + I+G  N+GKS+L N L ++D A
Sbjct: 180 DFDN--IFNLLSKIDQELSLKIENSKKALTLNKGIVMAIVGKPNSGKSTLLNKLLEEDRA 237

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDIPGTTRDV+  ++D+ G    I DTAGIRETDD+VE  GI+++  E+E AD++L +
Sbjct: 238 IVTDIPGTTRDVIKGEIDINGIHFVIVDTAGIRETDDVVESIGIQKSIKELEKADIVLFV 297

Query: 306 KEINS--KKEISF----PKNIDFIFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINK 357
            +  +   KE  +     K +++I +  K D+ + + +E+     IS+ TGE    L + 
Sbjct: 298 LDSTTGFTKEDEYIFEKVKKLNYIPVWNKCDIGNNFNKEFKDAVKISALTGESFRSLESM 357

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSL 416
           I S +S+  +    S    +R L  L +  R +E A  N K    +D+++ ++R A   L
Sbjct: 358 ILSKVSDIIESGESSHVITQRQLEVLERVKRNVESAIFNLKSGYEVDVVSIDIRKALEEL 417

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
             + G    + LLD IFS FC+GK
Sbjct: 418 DVLIGKRFSDDLLDTIFSNFCVGK 441


>gi|121998021|ref|YP_001002808.1| tRNA modification GTPase TrmE [Halorhodospira halophila SL1]
 gi|205829155|sp|A1WWE4|MNME_HALHL RecName: Full=tRNA modification GTPase mnmE
 gi|121589426|gb|ABM62006.1| tRNA modification GTPase trmE [Halorhodospira halophila SL1]
          Length = 469

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 157/458 (34%), Positives = 244/458 (53%), Gaps = 24/458 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
           + + +TI A++T +    ++++R+SG    +V E +     P PR+A LR F    G  L
Sbjct: 16  DDDADTICAMATPSGQGGVAVVRVSGSRALEVAEEVAGPL-PAPREAGLRRFRDARGETL 74

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D GL++VFP P S+TGED  E   HG  A V  +LE L      R A PGEFS RAF NG
Sbjct: 75  DHGLVLVFPGPGSYTGEDVVELQGHGSPAAVTAVLEALCAA-GARPAGPGEFSERAFLNG 133

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++A LI +ET+  RR ++  +SG          D++  +R+ IEA LDF E+
Sbjct: 134 RLDLTQAEAVASLIEAETDGARRAALRALSGAFGQRVDGLADRMIDLRALIEAFLDFPED 193

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           EDV      E+  +I  L ++++    +   G     G ++ ++G  NAGKSSL N L+ 
Sbjct: 194 EDVPA-DPPELAAEIEALGSELAEIRRRAAAGVRFGEGIRVALVGPPNAGKSSLLNVLSG 252

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKRTFLEVENA 299
           ++ AIV+   GTTRDV+     L     ++ DTAG+R  E  D +E EG +R       A
Sbjct: 253 EEAAIVSAQAGTTRDVVRQWAALGSRHAELLDTAGLRDAEAQDEIEAEGARRARAAASEA 312

Query: 300 DLILLL--------KEINSKKEISFPKNIDFIF--IGTKSD--LYSTYTEEYDHL----I 343
           DL+L++        +E+ ++     P+ +  I   I    D   +   +E   H+    +
Sbjct: 313 DLLLVVIEAGKTLDEELRARIAEQAPRPVVVIVNKIDASGDEAGWEGESEVGAHVRRARV 372

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402
           S+ TG G+E L   + +++  +  +  ++  +  RH+  L +    LE A +  +  G  
Sbjct: 373 SAHTGAGIEALRRGLAALVDREAGEDAWA--ARHRHIEALDRAGEELEEALVVARRGGQE 430

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR A  +LG+ITG V  E LL  IFS FCIGK
Sbjct: 431 ELVAEALRRAQTALGEITGRVSHEALLGRIFSGFCIGK 468


>gi|223983398|ref|ZP_03633584.1| hypothetical protein HOLDEFILI_00864 [Holdemania filiformis DSM
           12042]
 gi|223964570|gb|EEF68896.1| hypothetical protein HOLDEFILI_00864 [Holdemania filiformis DSM
           12042]
          Length = 447

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 150/447 (33%), Positives = 248/447 (55%), Gaps = 15/447 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRILD 62
           +TI A+ST     AIS+IR+SGP    +   +  ++       ++RY + +D      +D
Sbjct: 4   DTIAAISTALQDGAISVIRISGPDSLAIAGRLFSRRVDDQPTHTVRYGYIIDPITKEAVD 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LL VF +P++FT ED  E   HGG  +   IL  L      RLA+PGEF+RRAF NG+
Sbjct: 64  EVLLTVFRAPKTFTREDVVEISGHGGRYITRRILA-LVLAEGARLADPGEFTRRAFLNGR 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AE++ D+I +++  Q +L+++G+ G +  L     + L +I + IE ++D+ E E
Sbjct: 123 IDLTQAEAVMDMIDADSSQQAQLAIQGIRGSIRRLIEPLNEALLNIIANIEVNIDYPEYE 182

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D +  + + VL         +   + + + G I++ G K VILG  N GKSSL NAL ++
Sbjct: 183 DAEQLTWESVLPQARSWLIRMDEILQRAESGRIMKKGVKTVILGKPNVGKSSLLNALLEE 242

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVT+I GTTRD++  ++ L    + + DTAGI +T+D VE+ GI+R+   +E A+LI
Sbjct: 243 DKAIVTEIAGTTRDLVEGEIHLRNVTLHLIDTAGIHQTEDRVEQIGIERSMKALEEAELI 302

Query: 303 LLLKEINSKKEISFPKNIDF------IFIGTKSDLYSTYTEEYDHLISSFTGEG-LEELI 355
           L++ + +  ++    + +D       I +  K DL +   E+    IS    +  +E LI
Sbjct: 303 LIVLDASRPQDDEDRRLLDLTEGRNRIVVINKKDL-APQAEDRSGTISICAAQNQIEPLI 361

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLAS 413
           ++I     +    L     +++R +  L++  R     ++N    G  LD++  +L+ A 
Sbjct: 362 DQINQRYEHHHAMLELPSLANERQIA-LARQARQSMAQAVNALQDGAELDLVTIDLQAAY 420

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++L +I G    E LLD +FSKFC+GK
Sbjct: 421 MALKEIVGEASREDLLDALFSKFCLGK 447


>gi|153803664|ref|ZP_01958250.1| probable tRNA modification GTPase TrmE [Vibrio cholerae MZO-3]
 gi|124120801|gb|EAY39544.1| probable tRNA modification GTPase TrmE [Vibrio cholerae MZO-3]
          Length = 325

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 125/320 (39%), Positives = 194/320 (60%), Gaps = 5/320 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL
Sbjct: 63  ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF EEE + 
Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ A
Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L +
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301

Query: 306 KEINSKKEISFPKNI--DFI 323
            +  +  E + P++I  DF+
Sbjct: 302 VD-GTTTEATDPQDIWPDFV 320


>gi|297585588|ref|YP_003701368.1| tRNA modification GTPase TrmE [Bacillus selenitireducens MLS10]
 gi|297144045|gb|ADI00803.1| tRNA modification GTPase TrmE [Bacillus selenitireducens MLS10]
          Length = 458

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 155/462 (33%), Positives = 257/462 (55%), Gaps = 34/462 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           +TI A+ST     AI I+R+SGP   ++ + + K   P    AS    +G      DG+I
Sbjct: 4   DTISAISTPMGEGAIGIVRISGPKAVELADRLYKGAVPLQEVASHTINYGHLINPEDGQI 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P+++T ED  E + HGG+  VN +L+ L      RLA PGEF++RAF N
Sbjct: 64  IEEVMVSVLRAPKTYTKEDMIEVNCHGGLTSVNRVLQ-LILNEGARLAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    ++M+ + G+LS+        L    + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDLIQAKTDRAMNVAMKQVEGKLSNRIQTLRQALLETVASVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDIL-----FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
                 + ++EV  D+L     ++K +I   ++  + G+I+R G   VI+G  N GKSSL
Sbjct: 183 ------YDAEEVTLDLLREKSTYVKQEIDRLLTTAEQGKILREGLSTVIVGRPNVGKSSL 236

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N+L  ++ AIVT+IPGTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   
Sbjct: 237 LNSLVHENKAIVTEIPGTTRDVIEEYVNIRGVPLKLLDTAGIRETEDVVERLGVERSRQV 296

Query: 296 VENADLILLLKEIN-----SKKEI-SFPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342
           + +A+LIL +   N     S +E+    K+ D I I  K DL      +E + L      
Sbjct: 297 MIDAELILFVVNYNEPLTDSDRELFELVKDQDTIVIVNKRDLDGQIDMKEVNQLAGQHPV 356

Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
              S    EG++EL   I+ +           S  S+ RH+  L+Q  R ++ A +  E 
Sbjct: 357 VTTSLLKDEGVDELEEAIRDLFFEGDLDSGDLSYVSNSRHIALLNQAKRSIDEALMAVET 416

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++  A   LG++ G    E L+D +FS+FC+GK
Sbjct: 417 GMPVDMVQIDITKAWELLGEVIGDSVHESLIDQLFSQFCLGK 458


>gi|86610114|ref|YP_478876.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123500914|sp|Q2JIE6|MNME_SYNJB RecName: Full=tRNA modification GTPase mnmE
 gi|86558656|gb|ABD03613.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 459

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 148/439 (33%), Positives = 236/439 (53%), Gaps = 20/439 (4%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRILDKGLLIVFPSPES 74
           ++ I+RLSG     + + I    +      S R  +G      G+ILD+ L +   +P S
Sbjct: 24  SVGIVRLSGSRALPIVQAIFTPARRNAVWESHRLLYGWIRDEKGQILDEALAVWMQAPRS 83

Query: 75  FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134
           +T ED AE H HGGI VV   L++  +    RLA PGEFS RAF NG+IDL +AES+ADL
Sbjct: 84  YTREDVAELHCHGGIMVVQATLQQCLRQ-GARLAQPGEFSLRAFLNGRIDLTQAESVADL 142

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           +++ +    R+++ G+ G+L         +L  + + IEA LDF  EED+          
Sbjct: 143 VAARSPQAARMALAGLQGKLGGSIRALRQELLGLLAEIEARLDF--EEDLPPLDVAAWQA 200

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +  ++  I + ++  + G+++R G K+ I+G  N GKSSL NA + +D AIVTD+PGTT
Sbjct: 201 RLQAIQTQIQALLATAERGQLLRTGVKVAIVGRPNVGKSSLLNAWSGQDRAIVTDLPGTT 260

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDV+   L ++G  V++ DTAGIR T+D VE+ G++R+    + AD+++L+ +  +    
Sbjct: 261 RDVVESHLVVKGIPVQLLDTAGIRATEDPVERLGVERSQRLAQAADVLVLVIDAQAGWTA 320

Query: 315 SFP------KNIDFIFIGTKSDLYS----TYTEEYDHLISSFT--GEGLEELINKIKSIL 362
           +        ++   I +  K+DL          E  H + +    G+G+ EL   ++ ++
Sbjct: 321 ADAAIYESIRHRPLILVINKTDLAPPEGIPLPPEIAHRVPAVAAQGKGIPELEEALEQLV 380

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKITG 421
           +    +    I  ++R    L Q    LE +    +    LD  + +LR A  +LG+ITG
Sbjct: 381 TQGRPQPNLEISLNQRQAAALQQAQASLEQVGQAIQAQLPLDFWSIDLRGALHALGQITG 440

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               E +LD IFS+FCIGK
Sbjct: 441 EEISESVLDQIFSRFCIGK 459


>gi|320333416|ref|YP_004170127.1| tRNA modification GTPase mnmE [Deinococcus maricopensis DSM 21211]
 gi|319754705|gb|ADV66462.1| tRNA modification GTPase mnmE [Deinococcus maricopensis DSM 21211]
          Length = 438

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 142/451 (31%), Positives = 241/451 (53%), Gaps = 34/451 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD--GRI 60
           ++TI A+ST      I ++R+SG    +V + +   ++   R    R+ +G  LD  G +
Sbjct: 7   EDTIAAISTAPGAGGIGVVRVSGEDALRVADAMFAGRRAPGRTPGGRFLYGRVLDASGDV 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L +VF +P S+TGED  EF  HG  AV+N +L   A     R A PGEF+ RA+ N
Sbjct: 67  VDESLALVFRAPHSYTGEDVVEFQTHGSPAVLNRVLAR-ALEAGARPAKPGEFTLRAYVN 125

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++  L++++T+  RR +  G++G L++       ++T + + ++A LD+ E
Sbjct: 126 GRLDLAQAEAVLSLVNAQTDTARRQATLGLTGALANRVALIQSRVTRVLAAVQAMLDYPE 185

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E        ++    +     D+ + I+  + G++   G ++ ++G  NAGKSSL NAL 
Sbjct: 186 E----GVPEEDRETPLALAAQDLEALIASSRAGQLATRGARLALIGRPNAGKSSLLNALL 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + +IVT + GTTRD L   L+L G  + + DTAG+R+TDD +E  G+++       AD
Sbjct: 242 GYERSIVTPVAGTTRDYLEAQLELAGVPITLVDTAGLRDTDDAIEAAGVRQAVALAGGAD 301

Query: 301 LILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
           LIL L++ +S +E   +  P +   + + TK+DL   + +     +S+ TG GL  L   
Sbjct: 302 LILHLEDGSSPREDAALDTPAD-RTLHVRTKADLPPAWADAATLPVSAVTGAGLPALREA 360

Query: 358 IKSILSNKFKKLPFSIPSH------KRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENL 409
           I++ L     +    + +       +R L H+ Q  R L  E+A+L         + E L
Sbjct: 361 IRARLLGDAARGEAWLTTERQGDAARRALGHV-QAARALPDELATLE--------LEEAL 411

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R    +L  +TG    E ++D +F  FC+GK
Sbjct: 412 R----ALNDLTGRDVTEDVVDAVFRNFCVGK 438


>gi|15896965|ref|NP_350314.1| tRNA modification GTPase TrmE [Clostridium acetobutylicum ATCC 824]
 gi|21363021|sp|Q97CW2|MNME_CLOAB RecName: Full=tRNA modification GTPase mnmE
 gi|15026841|gb|AAK81654.1|AE007868_10 Predicted GTPase, ThdF family [Clostridium acetobutylicum ATCC 824]
 gi|325511142|gb|ADZ22778.1| tRNA modification GTPase TrmE [Clostridium acetobutylicum EA 2018]
          Length = 459

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 161/464 (34%), Positives = 261/464 (56%), Gaps = 34/464 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG-----L 56
           E +TI A+ST    S ISIIR+SG     + +  F  K KK      +    +G      
Sbjct: 3   EFDTIAAISTAIGNSGISIIRVSGKEALSIVDKVFKGKSKKGIIEMNTYTMRYGNIVELS 62

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +G I+D+ ++     P+SFTGE+  E + HGG+     +LEE+ +    RLA PGEF++R
Sbjct: 63  NGDIIDEVIVSFMKGPKSFTGENVVEVNCHGGMYPTKRVLEEIIR-AGARLAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I+S+TE+  + ++    G +S    +   ++  I + IEA +
Sbjct: 122 AFLNGRLDLSQAEAVMDIINSKTELSMKSAVAQSEGVISREINKLRQRILEIIAHIEATV 181

Query: 177 DFSEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           D+ E+ D++  +++ V   LNDIL    +I   I     G+I+R G   VI+G  N GKS
Sbjct: 182 DYPED-DLEEVTAENVSKDLNDIL---KEIDELILSADEGKILREGLNTVIIGKPNVGKS 237

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N L  +  AIVTDIPGTTRDV+   +++ G  +KI DTAGIRET+D++EK G++R+ 
Sbjct: 238 SLLNLLLDEKRAIVTDIPGTTRDVIEEYINISGIPIKIVDTAGIRETEDVIEKMGVERSK 297

Query: 294 LEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTE------EY 339
            ++ENADLI+ +  I+S K+        I + K+  +I +  K DL +   +        
Sbjct: 298 EKMENADLIIFM--IDSSKKIDAEDLEIIDYIKDKKYIVLLNKVDLKNREDKSKLDLLNK 355

Query: 340 DHLISSFTGE--GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
           D++I     E  GLE+L + I+++ +    +   ++ ++ RH   L +   +   +    
Sbjct: 356 DNIIEFSVKEKVGLEKLKDTIENMFATGNLQHSNTMITNTRHKEALLRAREHCTTSLKAL 415

Query: 398 KDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D   +D+ + ++R A  +LG+ITG    E L+D IF  FC+GK
Sbjct: 416 QDTLAIDLASIDIRNAWTALGEITGETLQEDLIDKIFKDFCLGK 459


>gi|33866852|ref|NP_898411.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8102]
 gi|46577381|sp|Q7U3V6|MNME_SYNPX RecName: Full=tRNA modification GTPase mnmE
 gi|33639453|emb|CAE08837.1| putative thiophen / furan oxidation protein [Synechococcus sp. WH
           8102]
          Length = 450

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 143/444 (32%), Positives = 248/444 (55%), Gaps = 33/444 (7%)

Query: 18  SAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFGL----DGRILDKGLLIVFPS 71
             I+++R+SGP+       +  C  ++      S R  +G     +GR LD+ LL++   
Sbjct: 19  GGIAVVRVSGPAAEATGRSVVHCPGRQVC---GSHRVMYGHVIDGEGRRLDEVLLLLMRG 75

Query: 72  PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131
           P SFTGED  E H HGG+  V  +LE +   P +R A PGEFS+RA  NG++DL  AE++
Sbjct: 76  PRSFTGEDVVEIHCHGGVVAVQQVLERVLAHPGVRRALPGEFSQRAVLNGRLDLTRAEAV 135

Query: 132 ADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           ++L+++ +     L+M G+ G    ++++L  + +D+LT +    EA +DF  EED+   
Sbjct: 136 SELVAARSRRAAELAMAGLDGGIQAKITALRERLLDQLTEL----EARVDF--EEDLPPL 189

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
               +L+ +  ++  + + ++ G+  + +R+G ++ ++G  N GKSSL N L++++ AIV
Sbjct: 190 DGDALLDGLQQVRQALLTLVADGERADALRSGLRVALVGRPNVGKSSLLNRLSRRERAIV 249

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           T++PGTTRD+L  ++ LEG  + + DTAGIR TDD VE+ GI R+   +  AD++LL+ +
Sbjct: 250 TELPGTTRDLLESEIVLEGVPITLLDTAGIRSTDDAVEQLGIARSEEALATADVVLLVLD 309

Query: 308 INSKKEIS-------FPKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLEELINKI- 358
            ++             P++I  I +  K+DL +    +  D  +S+  G G E+L+  + 
Sbjct: 310 GHAGWTAEDAALLARIPEHIPRILVANKADLPAGALPQPVDVQLSALEGTGEEDLVQALL 369

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTV--RYLEMASLNEKDCGLDIIAENLRLASVSL 416
           +   +   + +  ++   +R L   +     R  E+A+   +    D    +LR A  +L
Sbjct: 370 ERCGAAGTEGVLLALNERQRDLAATAAAALGRSQEVAA---QQLPWDFWTIDLREAIRAL 426

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G+ITG    E +LD +FS+FCIGK
Sbjct: 427 GEITGEELTEAVLDRVFSRFCIGK 450


>gi|329724170|gb|EGG60688.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU144]
          Length = 459

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K KK      +    +G  +D      
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETNET 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF N
Sbjct: 64  VEEVMVSVLRAPKTFTREDITEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ ++  +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 183 YDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  AD
Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302

Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343
           LIL +  +N+ + ++          KN D I I  K+DL       E   +I        
Sbjct: 303 LILFV--LNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG++EL  +IK +    + +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|190576473|ref|YP_001974318.1| tRNA modification GTPase TrmE [Stenotrophomonas maltophilia K279a]
 gi|190014395|emb|CAQ48043.1| putative tRNA modification GTPase [Stenotrophomonas maltophilia
           K279a]
          Length = 449

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 146/450 (32%), Positives = 238/450 (52%), Gaps = 23/450 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGRILDK 63
           +TI A+++      + ++RLSGP   +          P   PR A        DG ++D 
Sbjct: 8   DTIVAIASAPGAGGVGLLRLSGP---RAAAIANALGAPALRPRHAHYARLRDADGEVIDD 64

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+++ FP+P SFTGE+  E   HG   ++  ++     +   R A PGEFS RAF NGK+
Sbjct: 65  GIVLWFPAPNSFTGEEVVELQGHGSPVLLQQLVARCIAL-GARQARPGEFSERAFLNGKL 123

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI++      R +   + G  S      +++L  +R  +EA +DF++E  
Sbjct: 124 DLAQAEAIADLIAAGDNRAARAARRSLDGVFSRRIDAVVEQLVLLRIHVEAAIDFADEP- 182

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +      +V   +   ++D++      + G  +R+G   V++G  NAGKSSL NALA  +
Sbjct: 183 LDTLGGAQVRRGLEQARSDLALLRRDAERGRRLRDGLHAVLIGPPNAGKSSLLNALAGSE 242

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRD L   + L+G  + + DTAG+R+  D +E+EG++R  +E+E  DL L
Sbjct: 243 RAIVTDIAGTTRDTLRETIRLDGLELTLVDTAGLRDGGDAIEREGMRRARVEIERTDLAL 302

Query: 304 LLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYT--EEYDHL-ISSFTGEGL 351
           ++ +                + P     ++I  KSDL       ++ D + +S+ TG GL
Sbjct: 303 IVLDARDPAAGEAALGEAVAAVPHK---VYIHNKSDLLEALPALDDPDRVFVSAATGAGL 359

Query: 352 EELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           ++L  +++SI S    +++     +  RH+  + +   + + A        L++ AE LR
Sbjct: 360 DDLHARLRSIASAGAGEQVDGEFSARTRHVDAIERAQEHAQRADGELAHEHLELAAEELR 419

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 420 LAHDALGEITGQMSADDLLGRIFSSFCIGK 449


>gi|148240676|ref|YP_001226063.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 7803]
 gi|205829179|sp|A5GPA1|MNME_SYNPW RecName: Full=tRNA modification GTPase mnmE
 gi|147849215|emb|CAK24766.1| tRNA modification GTPase [Synechococcus sp. WH 7803]
          Length = 460

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 145/445 (32%), Positives = 230/445 (51%), Gaps = 33/445 (7%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASL---RYFFGL-----DGRILDKGLLIVFPS 71
           I++IRLSGP      + + +     P + S    R  +G       G  +D+ L+++  +
Sbjct: 25  IAVIRLSGPQAQAAVQSVTR----IPGQQSWESHRVLYGHVLAGESGERIDEVLVLLMLA 80

Query: 72  PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131
           P SFTGED  E H HGG+  V  +L  +   P +R A PGEFS+RA  NG++DL  AE++
Sbjct: 81  PRSFTGEDVVEIHCHGGVIAVQRVLARVLDQPGVRRALPGEFSQRAVLNGRLDLTRAEAI 140

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           +DL+++ ++    L+M G+ G +        D+L    S +EA +DF  EED+       
Sbjct: 141 SDLVAARSQRAAELAMAGVDGGIQKRITALRDRLLDQLSELEARVDF--EEDLPALDGAA 198

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
           +L ++  ++  +   +  G++G  +R G ++ ++G  N GKSSL N L++++ AIVTD+P
Sbjct: 199 LLEELQRVRGALQQLVKDGQVGAALRQGLRVALVGRPNVGKSSLLNRLSRRERAIVTDLP 258

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--- 308
           GTTRD+L  ++ LEG  + + DTAGIR T D VE+ GI R+   + +ADL+LLL ++   
Sbjct: 259 GTTRDLLESEIVLEGVPITLLDTAGIRATSDAVERLGIARSHDALASADLVLLLFDLSVG 318

Query: 309 ----NSKKEISFPKNIDFIFIGTKSDLY------STYTEEYDHLISSFTGEGLEELINKI 358
               +       P  +  + +G K D+        T     D  +S+ TG G  EL+  +
Sbjct: 319 WTPDDEALRQRIPAAVPHLLVGNKVDVAVSDARAGTSGSAADIRLSASTGAGEAELVQAV 378

Query: 359 K---SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
                 L++    L  +               R  ++A+        D    +LR A  S
Sbjct: 379 LERCGALADGSLLLSLNQRQGDLAQQAADALARSAQVAA---DGLPWDFWTIDLRQAIHS 435

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG+ITG    E +LD IFS+FCIGK
Sbjct: 436 LGEITGEELTESVLDRIFSRFCIGK 460


>gi|90194084|gb|ABD92603.1| ThdF [Bibersteinia trehalosi]
          Length = 436

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 151/437 (34%), Positives = 238/437 (54%), Gaps = 29/437 (6%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SGP   +V + +  K    PR A+   F   DG +LD+G+ + F +P SFTGE
Sbjct: 7   GVGILRISGPLAEKVAQEVLGKTLK-PRMANYLPFKDQDGTVLDQGIALFFKAPNSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ + K+  +R+A  GEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQIILDLLLQRILKIEGIRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S+   + +D + ++R+++EA +DF +EE +   +  ++   LN+
Sbjct: 126 SEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLNE 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+   + +     QG    I+R G K+VI G+ NAGKSSL NALA ++ AIVTDI GTTR
Sbjct: 185 IIAQLDGVRKEAKQGS---ILREGMKVVIAGNPNAGKSSLLNALAGREAAIVTDIAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           DVL   + ++G  + I DTAG+RE  D VEK GI+R + E+  AD +LL+ +        
Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIGQADHVLLMIDSTLSAADQ 301

Query: 316 F-----------PKNIDFIFIGTKSDLYSTY--TEEYDHL----ISSFTGEGLEELINKI 358
           F           P  +    I  K DL       E+ D+     +S+ T  G+E L   +
Sbjct: 302 FQQEWADFLAKLPVKMPVTVIRNKVDLSGEQEGVEQQDNFTLIRLSAQTKVGVELLREHL 361

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416
           K  +  +         + +RHL  L     +LE     L +   G +++AE LR+   +L
Sbjct: 362 KKSMGYQ-SSTEGGFIARRRHLVALETAAEHLERGHTQLTQFMAG-ELLAEELRMVQNAL 419

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 420 SEITGQFTSDDLLGNIF 436


>gi|227810188|gb|ACP41241.1| tRNA modification GTPase [Actinobacillus minor]
          Length = 416

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 146/422 (34%), Positives = 239/422 (56%), Gaps = 29/422 (6%)

Query: 22  IIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSA 81
           I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTGED  
Sbjct: 1   ILRVSGPLASEVAKAVVGKELK-PRLANYLPFMDTDGTVLDQGIALFFKAPNSFTGEDVL 59

Query: 82  EFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141
           E   HGG  +++ +L+ + ++  +R+A  GEFS +AF N K+DL +AE++ADLI + +E 
Sbjct: 60  ELQGHGGQVILDLLLKRILEVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDATSEQ 119

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDILF 198
             R +++ + GE S+   + +D + ++R+++EA +DF +EE +   +  ++   LNDI+ 
Sbjct: 120 AARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLNDII- 177

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
               +++   + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTTRDVL
Sbjct: 178 --TQLANVRKEAKQGSILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTRDVL 235

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-- 316
              + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL+ + + ++   F  
Sbjct: 236 REHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQADVFKT 295

Query: 317 ---------PKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTGEGLEELINKIKSI 361
                    P+NI    I  K DL   S   E+ D      +S+ T  G++ L   +K  
Sbjct: 296 EWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTIIRLSAQTKVGVDLLREHLKQS 355

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKI 419
           +  +         + +RHL  L     +LE     L +   G +++AE LR+   +L +I
Sbjct: 356 MGYQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAG-ELLAEELRMVQNALSEI 413

Query: 420 TG 421
           TG
Sbjct: 414 TG 415


>gi|134082090|emb|CAK42207.1| unnamed protein product [Aspergillus niger]
          Length = 615

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 124/312 (39%), Positives = 189/312 (60%), Gaps = 28/312 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR-----I 60
           TI+A+ST +  +AI+++R SGP+C Q+ + +C +   P PR A +R  +    +     +
Sbjct: 64  TIYALSTASGRAAIAVVRASGPACVQIYKSLCPEAPLPRPRLAVVRTLYDPSQKPSPNTV 123

Query: 61  LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSR 115
           LD G L++ FP P++ TGED  E H+HGG A+V  +L  +++  N    +R A PGEF+R
Sbjct: 124 LDAGALVLYFPGPKTVTGEDVLELHLHGGPAIVKSVLSSISRTNNPDYTVRYAEPGEFTR 183

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N ++DL + E+L D +S++TE QRRL++ G S  LS  Y QW  +L + R  +EA 
Sbjct: 184 RAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSKRYEQWRHQLLYARGELEAL 243

Query: 176 LDFSE----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           +DFSE    +E  ++  S  V   +  L+  I+ HI     GE++RNG K+ +LG  NAG
Sbjct: 244 IDFSEDQHFDESTEDLVSS-VAAQVRALRAQIALHIQNASKGELLRNGIKVALLGAPNAG 302

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDD-------- 282
           KSSL N +  ++ AIV+   GTTRD++ + +D+ G+  K+ D AGIR E +D        
Sbjct: 303 KSSLLNRIVGREAAIVSTEEGTTRDIVDVGVDIGGWYCKLGDMAGIRSEPNDPTGQKKTV 362

Query: 283 ---IVEKEGIKR 291
               VE+EGI+R
Sbjct: 363 VIGAVEQEGIRR 374


>gi|253573863|ref|ZP_04851205.1| tRNA modification GTPase TrmE [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846340|gb|EES74346.1| tRNA modification GTPase TrmE [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 459

 Score =  225 bits (574), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 155/458 (33%), Positives = 245/458 (53%), Gaps = 25/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD---GRI 60
           +TI A+ST    S I++IR+SGP        + + K   P   S  + Y F +D   G  
Sbjct: 4   DTIAAISTAVGESGIAVIRVSGPEAISEVGRLFRSKTALPEAESHTVHYGFIVDPATGEK 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           L++ L+ VF +P SFT ED  E   HGGI  V  +++ L +   +RLA PGEF++RAF N
Sbjct: 64  LEEVLVSVFRAPRSFTTEDVVEISTHGGIISVKRVMDLLLQQRGIRLAEPGEFTKRAFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI S+++    ++++ + G+LS    +    L    + IE ++D+ E
Sbjct: 124 GRIDLSQAEAVIDLIRSKSDRAFSVALKQVEGQLSRQISKLRHTLIETLAHIEVNIDYPE 183

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             DV++ +   +      +   I + +     G+I+R G    I+G  N GKSSL NALA
Sbjct: 184 H-DVESMTMAFIKEKCAEVSEGIDALLKTANQGKILREGITTAIVGRPNVGKSSLMNALA 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDIPGTTRDV+   + +    +K+ DTAGIRET D+VE+ G++R+   V  AD
Sbjct: 243 RENKAIVTDIPGTTRDVIEEYVTINNIPLKLLDTAGIRETMDVVEQIGVERSKAAVSEAD 302

Query: 301 LIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISS 345
           LIL               L++++  +  I     ID      +  +   + EE    +S 
Sbjct: 303 LILLVLNSAEALHEDEIALMEQLKGRSTIVLLNKIDLPQQLDREVVRRYFPEESIVELSV 362

Query: 346 FTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--L 402
            T EGL+ L + I +     + +    +  S+ RH+  L +  + L  A     D G  +
Sbjct: 363 KTEEGLDHLEDAIARMFFGGELESNDLTYVSNVRHIALLKKAKQSLADA-YEAADSGIPI 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           DI+  ++RLA   LG++ G    + L+D IFS+FC+GK
Sbjct: 422 DILQIDVRLAWEQLGEVIGDSAPDALIDQIFSQFCLGK 459


>gi|251811361|ref|ZP_04825834.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874718|ref|ZP_06283597.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis SK135]
 gi|251805110|gb|EES57767.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296434|gb|EFA88949.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis SK135]
          Length = 459

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K KK      +    +G  +D      
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETNET 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF N
Sbjct: 64  VEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ ++  +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 183 YDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  AD
Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302

Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343
           LIL +  +N+ + ++          KN D I I  K+DL       E   +I        
Sbjct: 303 LILFV--LNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG++EL  +IK +    + +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEILGESASDELIDQLFSQFCLGK 459


>gi|312210491|emb|CBX90578.1| hypothetical protein [Leptosphaeria maculans]
          Length = 723

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 195/339 (57%), Gaps = 30/339 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD---- 57
           H+  TI+A+ST    +AI++IR+SG +C Q+   +C     P PR+A+LR  +  +    
Sbjct: 76  HDDPTIYALSTAPGRAAIAVIRISGSACRQIYHALCPSAAFPKPRQATLRKLYTPNISPS 135

Query: 58  -GRILDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEEL-------------AKM 102
              +LD G L++ FP+P + TGED  E HVHGG A+V  +L  +                
Sbjct: 136 PATLLDSGALVLYFPAPSTVTGEDLLELHVHGGPAIVRAVLAAIPACTKVADAVSGGTAA 195

Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162
             +R A PGEF+RRAF N ++DL + ESL + +S+ TE QR+LS+ G +  L++ Y QW 
Sbjct: 196 AQIRYAEPGEFTRRAFANNRMDLPQIESLGETLSATTEEQRKLSVRGTTSSLAARYEQWR 255

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSS---KEVLNDILFLKNDISSHISQGKLGEIIRNG 219
             L   R  +EA +DFSE++      +     V   +  L+  + +H++    GE++RNG
Sbjct: 256 MLLLAARGELEALIDFSEDQHFDESPAVLCASVAKQVHSLRIHMEAHVANAVRGELLRNG 315

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
             + +LG  NAGKSSL N +  +D AIV+   GTTRDV+ + LDL G+LVK+ D AG+R 
Sbjct: 316 ISVALLGAPNAGKSSLLNRIVGRDAAIVSHEAGTTRDVVEVGLDLGGWLVKMGDMAGLRR 375

Query: 279 ------ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
                 E+   +EKEGI+R       +D+++++++  ++
Sbjct: 376 AGLLGEESVGAIEKEGIRRAKQRAFESDVLVVVQDATTE 414


>gi|168494446|ref|ZP_02718589.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC3059-06]
 gi|221231770|ref|YP_002510922.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ATCC
           700669]
 gi|225854518|ref|YP_002736030.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae JJA]
 gi|183575548|gb|EDT96076.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC3059-06]
 gi|220674230|emb|CAR68765.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ATCC
           700669]
 gi|225724002|gb|ACO19855.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae JJA]
 gi|332075364|gb|EGI85833.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41301]
          Length = 457

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 150/462 (32%), Positives = 261/462 (56%), Gaps = 28/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIVQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342
           ++ ADL+LL+  +N+ ++++          ++ + I +  K+DL  T   E   L     
Sbjct: 300 LKEADLVLLV--LNASEQLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVI 355

Query: 343 -ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
            IS    + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E 
Sbjct: 356 RISVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLEL 415

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 416 GMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|167462792|ref|ZP_02327881.1| tRNA modification GTPase TrmE [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 457

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 159/457 (34%), Positives = 248/457 (54%), Gaps = 23/457 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGRI 60
           KETI A+ST      IS+IR+SG     +   I K + P     +    +G     DG  
Sbjct: 3   KETIAAISTPLGEGGISVIRVSGDESIAIVNKIFKSRTPLTEAETHTVHYGHIVDTDGHK 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ L+ V  +P SFT ED  E   HGGI  V  +L+ L      RLA PGEF++RAF N
Sbjct: 63  VEEVLVTVMRAPRSFTTEDVVEVSCHGGIVSVKKVLDLLLDQ-GARLAEPGEFTKRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++++   +++++ + G LS    +   +L  + + +E ++D+ E
Sbjct: 122 GRIDLTQAEAVIDLIRAKSDRAFQIALKQVDGILSKRIRKIRQELVELMAHVEVNIDYPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             DV   +   +L+       +I   +   + G+I+R G    I+G  N GKSSL NALA
Sbjct: 182 H-DVAEMTHALILDKCNKGIQEIDFLLHTAQQGKILREGIVTAIVGKPNVGKSSLMNALA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDIPGTTRDV+   +++ G  +K+ DTAGIRET D+VE+ G++R+   +  AD
Sbjct: 241 QENRAIVTDIPGTTRDVIEEYVNVGGIPLKLLDTAGIRETTDVVEQIGVERSRSALSEAD 300

Query: 301 LILLL------KEINSKKEISFPKNIDFIFIGTKSDL---------YSTYTEEYDHLISS 345
           LILL+       E    + +S  K+   + I  K+DL          + Y +E    +S 
Sbjct: 301 LILLVLNSSEPLEEEELRLLSQLKDRQTLIILNKTDLPLGLHLEDICNLYPKEQVVKLSL 360

Query: 346 FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
              +GLE+L   I  +    + +    +  S+ RH++ L Q  + L+ A   NE    +D
Sbjct: 361 IQQKGLEDLEKAISGLFFEGRLESGDMNYVSNVRHIHLLKQAKQSLQDAIEANENGVPID 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I  +LR A   LG+I G    E L+D IFS+FC+GK
Sbjct: 421 MIQIDLRAAWEQLGEIIGDSVAESLIDQIFSQFCLGK 457


>gi|27469335|ref|NP_765972.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis ATCC
           12228]
 gi|57865942|ref|YP_187603.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis RP62A]
 gi|293367584|ref|ZP_06614237.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|32171815|sp|Q8CMN5|MNME_STAES RecName: Full=tRNA modification GTPase mnmE
 gi|81675521|sp|Q5HS36|MNME_STAEQ RecName: Full=tRNA modification GTPase mnmE
 gi|27316885|gb|AAO06060.1|AE016752_93 putative thiophene and furan oxidation protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|57636600|gb|AAW53388.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis RP62A]
 gi|291318297|gb|EFE58690.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329735775|gb|EGG72056.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU028]
          Length = 459

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K KK      +    +G  +D      
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETNET 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF N
Sbjct: 64  VEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ ++  +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 183 YDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  AD
Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302

Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343
           LIL +  +N+ + ++          KN D I I  K+DL       E   +I        
Sbjct: 303 LILFV--LNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG++EL  +IK +    + +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|327398259|ref|YP_004339128.1| tRNA modification GTPase mnmE [Hippea maritima DSM 10411]
 gi|327180888|gb|AEA33069.1| tRNA modification GTPase mnmE [Hippea maritima DSM 10411]
          Length = 453

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 160/464 (34%), Positives = 259/464 (55%), Gaps = 38/464 (8%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DG 58
            H+++ I A++TG   +AI IIR+SG  C ++ E I  KK P+  KA+  Y+  +    G
Sbjct: 3   QHDEDIIAAIATGYTEAAIGIIRVSGKGCLELLEKIFTKKPPY--KANRLYYGHITDKQG 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           ++LD+ L+ +F +P S+TGEDS E + HGG+ V+N +LE + +    RLA PGEF++RAF
Sbjct: 61  KVLDEVLVSIFKAPHSYTGEDSFEINCHGGLVVLNSVLERVME-AGARLAQPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++A +IS++++    ++   + G  SS   +  +++ ++ +  E  +D 
Sbjct: 120 LNGKLDLSQAEAVAKVISAKSKRAVDVAQRQLQGNFSSKLDEIREQILYLMAENEVRIDH 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            EE D+ + S++E +  I  ++N +   +   + G  +  G  + ++G  N GKSSL N 
Sbjct: 180 PEE-DLSDVSTEEKIRTISDIQNKLKQILRAAEFGNHLFEGVILALVGKPNVGKSSLLNL 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           +   + AIVTDIPGTTRDV+    ++ G    I DTAGIR+T+D VEK G+KR+   ++ 
Sbjct: 239 ITGSERAIVTDIPGTTRDVVKEQFNINGVPFSILDTAGIRKTNDTVEKIGVKRSLKAIDE 298

Query: 299 ADLILLL------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE---YDHL- 342
           AD++L +            K I   K  + P     I I  K+DL     ++   ++HL 
Sbjct: 299 ADIVLAIFDGSNDLTQEDKKLIERLKSSAKP----IIAILNKTDLGIKINKDNLPFEHLL 354

Query: 343 -ISSFTGEGLEELINKIKSI-LSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKD 399
            +S  +G+GL++L   + +I L         S+  S K+ L    Q    L+    N+ D
Sbjct: 355 ELSCKSGKGLDKLEKTLSNIALGGVDDSQIVSLNASQKQSLKKAIQMCEQLKNDIDNDID 414

Query: 400 ---CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G+D +A    L  V +GKIT     E +LD++F KFCIGK
Sbjct: 415 PALIGVDFMALTDYLDEV-IGKITN----EDMLDVMFKKFCIGK 453


>gi|322381368|ref|ZP_08055371.1| tRNA modification GTPase TrmE-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154944|gb|EFX47215.1| tRNA modification GTPase TrmE-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 460

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 159/457 (34%), Positives = 248/457 (54%), Gaps = 23/457 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGRI 60
           KETI A+ST      IS+IR+SG     +   I K + P     +    +G     DG  
Sbjct: 6   KETIAAISTPLGEGGISVIRVSGDESIAIVNKIFKSRTPLTEAETHTVHYGHIVDTDGHK 65

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ L+ V  +P SFT ED  E   HGGI  V  +L+ L      RLA PGEF++RAF N
Sbjct: 66  VEEVLVTVMRAPRSFTTEDVVEVSCHGGIVSVKKVLDLLLDQ-GARLAEPGEFTKRAFLN 124

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++++   +++++ + G LS    +   +L  + + +E ++D+ E
Sbjct: 125 GRIDLTQAEAVIDLIRAKSDRAFQIALKQVDGILSKRIRKIRQELVELMAHVEVNIDYPE 184

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             DV   +   +L+       +I   +   + G+I+R G    I+G  N GKSSL NALA
Sbjct: 185 H-DVAEMTHALILDKCNKGIQEIDFLLHTAQQGKILREGIVTAIVGKPNVGKSSLMNALA 243

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDIPGTTRDV+   +++ G  +K+ DTAGIRET D+VE+ G++R+   +  AD
Sbjct: 244 QENRAIVTDIPGTTRDVIEEYVNVGGIPLKLLDTAGIRETTDVVEQIGVERSRSALSEAD 303

Query: 301 LILLL------KEINSKKEISFPKNIDFIFIGTKSDL---------YSTYTEEYDHLISS 345
           LILL+       E    + +S  K+   + I  K+DL          + Y +E    +S 
Sbjct: 304 LILLVLNSSEPLEEEELRLLSQLKDRQTLIILNKTDLPLGLHLEDICNLYPKEQVVKLSL 363

Query: 346 FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
              +GLE+L   I  +    + +    +  S+ RH++ L Q  + L+ A   NE    +D
Sbjct: 364 IQQKGLEDLEKAISGLFFEGRLESGDMNYVSNVRHIHLLKQAKQSLQDAIEANENGVPID 423

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I  +LR A   LG+I G    E L+D IFS+FC+GK
Sbjct: 424 MIQIDLRAAWEQLGEIIGDSVAESLIDQIFSQFCLGK 460


>gi|227810186|gb|ACP41240.1| tRNA modification GTPase [Actinobacillus minor]
          Length = 420

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 146/422 (34%), Positives = 239/422 (56%), Gaps = 29/422 (6%)

Query: 22  IIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSA 81
           I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTGED  
Sbjct: 2   ILRVSGPLANEVAKAVVGKELK-PRLANYLPFMDTDGTVLDQGIALFFKAPNSFTGEDVL 60

Query: 82  EFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141
           E   HGG  +++ +L+ + ++  +R+A  GEFS +AF N K+DL +AE++ADLI + +E 
Sbjct: 61  ELQGHGGQVILDLLLKRILEVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDATSEQ 120

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDILF 198
             R +++ + GE S+   + +D + ++R+++EA +DF +EE +   +  ++   LNDI+ 
Sbjct: 121 AARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLNDII- 178

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
               +++   + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTTRDVL
Sbjct: 179 --TQLANVRKEAKQGSILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTRDVL 236

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-- 316
              + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL+ + + ++   F  
Sbjct: 237 REHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQADVFKT 296

Query: 317 ---------PKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTGEGLEELINKIKSI 361
                    P+NI    I  K DL   S   E+ D      +S+ T  G++ L   +K  
Sbjct: 297 EWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTLIRLSAQTKVGVDLLREHLKQS 356

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKI 419
           +  +         + +RHL  L     +LE     L +   G +++AE LR+   +L +I
Sbjct: 357 MGYQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAG-ELLAEELRMVQNALSEI 414

Query: 420 TG 421
           TG
Sbjct: 415 TG 416


>gi|229824620|ref|ZP_04450689.1| hypothetical protein GCWU000282_01967 [Catonella morbi ATCC 51271]
 gi|229785991|gb|EEP22105.1| hypothetical protein GCWU000282_01967 [Catonella morbi ATCC 51271]
          Length = 460

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 158/473 (33%), Positives = 252/473 (53%), Gaps = 49/473 (10%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-----ASLRYFFG-- 55
           + ++TI A+ST     AI ++RLSGP      E I    + FP K     AS    +G  
Sbjct: 2   YTQDTIVAISTALGEGAIGLVRLSGP------EAIAIANRLFPEKDLSQVASHTIHYGHI 55

Query: 56  ---LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
                G++LD+ +  V  +P S+T ED  E + HGGI  +  IL         RLA PGE
Sbjct: 56  QDPQSGQVLDEVMTSVMKAPRSYTTEDVVEINGHGGIVAIQSILNACLSQ-GARLAEPGE 114

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NG+IDL +AE++ DLIS++T   +  +M  + G L     Q  D + +  + +
Sbjct: 115 FTQRAFLNGRIDLSQAEAIMDLISAKTNRAKDAAMSQLQGSLKHKIRQLRDTMLNTLAQV 174

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E  +D+ E +DV+  S +++ +    +++++ + + Q   G++ R G K  I+G  N GK
Sbjct: 175 EVTIDYPEYDDVEELSLQQLASTAELVQSEVRAILRQATQGKLFREGIKTAIIGRPNVGK 234

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N L  +D AIVTDI GTTRD +   + ++G  + I DTAGIR TD++VE+ G++++
Sbjct: 235 SSLLNYLIGEDKAIVTDIAGTTRDTIEEYISIKGVPLHIIDTAGIRHTDEVVEQIGVEKS 294

Query: 293 FLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEE--YDHL 342
              +E+ADLILL+  +N  + +           +N   I +  K DL + ++ E    HL
Sbjct: 295 RAMIESADLILLI--LNQAQALDPMDLELLELTQNKARIILLNKQDLPNQWSIEDLAGHL 352

Query: 343 --------ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
                    S  T +GL  L + I +  LS   +    +   + RH + L+Q      +A
Sbjct: 353 QDDSDIIKTSVLTEDGLTALEDAISARFLSGNLQSTDLNYLLNSRHTHLLNQA-----LA 407

Query: 394 SLNE--KDCGL----DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           SL+E  + C +    D+I  +   A  +LG+ITG    ++LL  +FS+FC+GK
Sbjct: 408 SLDEVIQSCAMSLPVDLIQIDYTRAWDALGEITGDSVQDELLTKLFSQFCLGK 460


>gi|300774015|ref|ZP_07083884.1| tRNA modification GTPase TrmE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760186|gb|EFK57013.1| tRNA modification GTPase TrmE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 458

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 158/455 (34%), Positives = 250/455 (54%), Gaps = 20/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGR-I 60
            ++ETI A++T     AI++IRLSG    ++   + + K    + +   +F  + DG  I
Sbjct: 7   QQQETIVALATANGNGAIAVIRLSGKDAIEIANQVFRGKDLSAQPSHTVHFGTIRDGEEI 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L+ +F  P S+T E   E   H    ++  I+  L +    R A PGEF+ RAF N
Sbjct: 67  LDEVLVTLFVGPNSYTKEHVVEISTHNSKYIIERIISLLIR-KGARAAKPGEFTLRAFLN 125

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G +DL +AE++ADLI+S +    +++M+ M G  S+   +  D L H  S IE +LDFSE
Sbjct: 126 GGMDLSQAEAVADLIASNSAASHQIAMQQMRGGFSNQLRRLRDDLIHFASLIELELDFSE 185

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E DV+ F++++ L  ++   N +   + Q  + G +++NG  +VI G  N GKS+L NAL
Sbjct: 186 E-DVE-FANRDQLKQLILQINSVVRKLIQSFEQGNVLKNGVPVVIAGKPNVGKSTLLNAL 243

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DI GTTRD +  ++++ G   +  DTAGIRET D++E +G++RT  +++ A
Sbjct: 244 LNEERAIVSDIAGTTRDTIEDEINIHGVTFRFIDTAGIRETVDVIEAKGVERTREKMKQA 303

Query: 300 DLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL----ISSF 346
            LI+ L         ++ ++ E     NI F+ I  KSDL +     EY  L    IS+ 
Sbjct: 304 RLIIYLFDPVQDTIADVETQLEEVRSLNIPFVTIINKSDLLTEEQRAEYRTLSPVFISAK 363

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
              G+EEL +++   ++         + ++ RH+  L  T   L       +     D +
Sbjct: 364 EQIGVEELKDELLRQVNLANLNTDDVMVTNIRHVEALQHTEDSLSRVLFGIDNPVTSDFL 423

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A ++R A   LG+ITG V  + LLD IFSKFCIGK
Sbjct: 424 AMDIRQALYHLGEITGSVSTDDLLDNIFSKFCIGK 458


>gi|223932526|ref|ZP_03624527.1| tRNA modification GTPase TrmE [Streptococcus suis 89/1591]
 gi|302024152|ref|ZP_07249363.1| tRNA modification GTPase TrmE [Streptococcus suis 05HAS68]
 gi|330833106|ref|YP_004401931.1| tRNA modification GTPase TrmE [Streptococcus suis ST3]
 gi|223898797|gb|EEF65157.1| tRNA modification GTPase TrmE [Streptococcus suis 89/1591]
 gi|329307329|gb|AEB81745.1| tRNA modification GTPase TrmE [Streptococcus suis ST3]
          Length = 457

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 157/462 (33%), Positives = 260/462 (56%), Gaps = 28/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F +   + K K     P   SL Y   +D 
Sbjct: 2   ITKEFDTITAISTPLGEGAIGIVRLSGTDAFAIASKVFKGKDLATVPSH-SLNYGHIIDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G++LD+ +L V  SP++FT ED  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 61  ATGQVLDEVILGVMRSPKTFTREDVIEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+     ++  + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  +++ V    L  +  + + +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDDIVEK G++R+   
Sbjct: 240 LNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGVERSKKA 299

Query: 296 VENADLILLLKEINSKKEIS-FPKNI-------DFIFIGTKSDLYSTYTEEYDHL----- 342
           +E ADLILL+  +N+ + ++   +N+       + I +  K+DL      E D L     
Sbjct: 300 LEEADLILLV--LNASEPLTEQDRNLLAISDLANRIVLLNKTDLEEQI--EADQLPEDVI 355

Query: 343 -ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
            IS    + ++++  KI  +   +    +   +  S+ RH+  + Q V+ L+  +   E 
Sbjct: 356 RISVLKNQNIDQIEEKINQLFFENAGLVEQDATYLSNSRHISLIEQAVQSLQAVNDGLEM 415

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 416 GMPVDLLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457


>gi|224475497|ref|YP_002633103.1| tRNA modification GTPase TrmE [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420104|emb|CAL26918.1| putative tRNA modification GTPase TrmE [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 460

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 251/460 (54%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62
           +TI ++ST     AI I+RLSG    ++ + + K KKP     S    +G    I+D   
Sbjct: 5   DTITSISTPMGEGAIGIVRLSGKEAVEITDKLYKGKKPLAEVESHTINYG---HIVDPET 61

Query: 63  -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
                + ++ V  +P++FT ED  E + HGGI  +N +LE L      RLA PGE+++RA
Sbjct: 62  NEVVEEVMVSVLRAPKTFTREDIVEINCHGGILTINHVLE-LTMSYGARLAEPGEYTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS +  +    +  I + +E ++D
Sbjct: 121 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDMIKRQRQSILEILAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K DI   ++ G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 181 YPEYDDVEDATTEFLLKQSKEIKEDIDKLLATGTQGKIMREGLSTVIVGKPNVGKSSMLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVEK G++R+   + 
Sbjct: 241 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 300

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI------- 343
            ADLIL +   N       +K     KN D I I  K+DL      +E   ++       
Sbjct: 301 EADLILFVLNYNEGLTEEDRKLYEVIKNEDAIIIVNKTDLEQHLDLDEVKAMVGDMPVIE 360

Query: 344 -SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
            S    EG+++L  +I+ +    + +    +  S+ RH+  L Q    ++ A    E   
Sbjct: 361 TSMLKQEGIDQLEEQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARNAIQDAIDAAEAGV 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 PMDMVQIDLTRTWQILGEIIGESASDELIDQLFSQFCLGK 460


>gi|307704774|ref|ZP_07641670.1| tRNA modification GTPase TrmE [Streptococcus mitis SK597]
 gi|307621683|gb|EFO00724.1| tRNA modification GTPase TrmE [Streptococcus mitis SK597]
          Length = 457

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 262/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTESFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMMGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY-TEEYDH---LISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T  T E       IS 
Sbjct: 300 LKEADLVLLVLNASEPLTSQDRQLLEISQDTNRIILLNKTDLPETIETSELPEDIIRISV 359

Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  ++NE  + G+
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|242243258|ref|ZP_04797703.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis W23144]
 gi|242233207|gb|EES35519.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis W23144]
          Length = 459

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K KK      +    +G  +D      
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETNET 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF N
Sbjct: 64  VEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ ++  +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 183 YDDVEDATTDFLLEQSKRIKEEINRLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  AD
Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302

Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343
           LIL +  +N+ + ++          KN D I I  K+DL       E   +I        
Sbjct: 303 LILFV--LNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG++EL  +IK +    + +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|295707338|ref|YP_003600413.1| tRNA modification GTPase TrmE [Bacillus megaterium DSM 319]
 gi|294804997|gb|ADF42063.1| tRNA modification GTPase TrmE [Bacillus megaterium DSM 319]
          Length = 462

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 155/459 (33%), Positives = 248/459 (54%), Gaps = 25/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFG--LDGR-- 59
           +TI A+ST     AI+I+RLSG     + + I K    K     AS    +G  +D +  
Sbjct: 5   DTIAAISTPMGEGAIAIVRLSGEEAITIADRIFKSVSNKRLTDVASHTIHYGHIVDPKTE 64

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++++ +L +   P++FT ED  E + HGGI  VN +L+ L      RLA PGEF++RAF
Sbjct: 65  QVVEEVMLSIMKGPKTFTREDIIEINCHGGIVSVNRVLQ-LVIANGARLAEPGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+
Sbjct: 124 LNGRVDLSQAEAVMDLIRAKTDKAMNMAIGQMEGRLSKLVRHLRQEILETLAHVEVNIDY 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     ++ +I   +     G+I+R G   VI+G  N GKSSL N+
Sbjct: 184 PEYDDVEEMTHQVLIEKASNVRQEIDKLLQTSHQGKILREGLATVIIGRPNVGKSSLLNS 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +   AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 244 LVQDAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQYLKE 303

Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY------DHLI--- 343
           ADLILL+   N       KK     K +D I I  K+DL      E       DH I   
Sbjct: 304 ADLILLVLNFNEELTDEDKKLFEAVKGMDVIVIVNKTDLEQKINLEEVQQFAGDHPIVTT 363

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
           S    +G+++L   I ++      +    +  S+ RH+  L+Q    ++ A    E    
Sbjct: 364 SLLQEQGVDQLEEAIAALFFGGTIESQDLTYLSNTRHIALLTQARGAIDEAITGIESGVP 423

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI+  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 424 IDIVQIDLTRTWELLGEIIGDAVHESLIDQLFSQFCLGK 462


>gi|194398466|ref|YP_002037652.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae G54]
 gi|194358133|gb|ACF56581.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae G54]
          Length = 457

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 259/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG + F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTNSFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMIGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T   E   L      I
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S    + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E   
Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|57651106|ref|YP_187524.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160757|ref|YP_495280.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|151222824|ref|YP_001333646.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161510921|ref|YP_001576580.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|258451369|ref|ZP_05699400.1| tRNA modification GTPase mnmE [Staphylococcus aureus A5948]
 gi|262049467|ref|ZP_06022339.1| tRNA modification GTPase [Staphylococcus aureus D30]
 gi|262051898|ref|ZP_06024113.1| tRNA modification GTPase [Staphylococcus aureus 930918-3]
 gi|282920717|ref|ZP_06328436.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9765]
 gi|284023035|ref|ZP_06377433.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           132]
 gi|294849826|ref|ZP_06790566.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9754]
 gi|73919888|sp|Q5HCI3|MNME_STAAC RecName: Full=tRNA modification GTPase mnmE
 gi|123484183|sp|Q2FDE8|MNME_STAA3 RecName: Full=tRNA modification GTPase mnmE
 gi|172049081|sp|A6QKK2|MNME_STAAE RecName: Full=tRNA modification GTPase mnmE
 gi|189036213|sp|A8YYS1|MNME_STAAT RecName: Full=tRNA modification GTPase mnmE
 gi|57285292|gb|AAW37386.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           COL]
 gi|87126731|gb|ABD21245.1| tRNA modification GTPase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|150375624|dbj|BAF68884.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160369730|gb|ABX30701.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257860899|gb|EEV83716.1| tRNA modification GTPase mnmE [Staphylococcus aureus A5948]
 gi|259160225|gb|EEW45254.1| tRNA modification GTPase [Staphylococcus aureus 930918-3]
 gi|259162464|gb|EEW47034.1| tRNA modification GTPase [Staphylococcus aureus D30]
 gi|282594125|gb|EFB99113.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9765]
 gi|294823374|gb|EFG39803.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9754]
 gi|315197916|gb|EFU28249.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320141415|gb|EFW33258.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144398|gb|EFW36163.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 459

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K K       S    +G  +D     +
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYGHIIDPESKEV 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N +LE L      R+A PGEF++RAF N
Sbjct: 64  IEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 183 YDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLNNLI 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVEK G++R+   +  AD
Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALSQAD 302

Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343
           LIL +  +N+ + ++          KN D I I  K DL       E   +I        
Sbjct: 303 LILFV--LNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQT 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG++EL  +I+ +    + +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGVP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459


>gi|329736122|gb|EGG72395.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU045]
          Length = 459

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K KK      +    +G  +D      
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETNET 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF N
Sbjct: 64  VEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ ++  +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 183 YDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  AD
Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRNALSEAD 302

Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343
           LIL +  +N+ + ++          KN D I I  K+DL       E   +I        
Sbjct: 303 LILFV--LNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG++EL  +IK +    + +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|323487692|ref|ZP_08092950.1| tRNA modification GTPase trmE [Planococcus donghaensis MPA1U2]
 gi|323398426|gb|EGA91214.1| tRNA modification GTPase trmE [Planococcus donghaensis MPA1U2]
          Length = 461

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 153/461 (33%), Positives = 257/461 (55%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG-----L 56
           E +TI A+ST +   AI+I+RLSGP    + +  F     K    +A+    +G      
Sbjct: 2   EFDTIAAISTPSGEGAIAIVRLSGPEAVAIADKLFRAPSNKALASQATHTIHYGHLEDPA 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G I ++ ++ +  +P++FT ED  E + HGGI  VN +LE L      RLA PGEF++R
Sbjct: 62  TGEIAEEVMVSLMKAPKTFTREDVIEINCHGGIVSVNRVLE-LVLRAGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G+LS L G     L    + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMDVALNQMEGKLSKLIGTLRQALLESIAQMEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +   +L    +++++I   +     G+I+R G   VILG  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTRPIMLEKSKWVRSEIEKLLQTSSQGKILREGLSTVILGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +++ AIVT+I GTTRD++   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NSLVQENKAIVTEIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRKVL 300

Query: 297 ENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY------DHLI- 343
           + ADLIL +    + +  + E+ F   K++D+I +  K+DL      E       D L+ 
Sbjct: 301 KEADLILYVLNYAEALTPEDELLFETVKDMDYIVVINKTDLPQKIDLEQVQKLAGDKLLV 360

Query: 344 --SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S    EG+++L   I ++    + +    +  S+ RH+  L Q  + +  A    E +
Sbjct: 361 TTSLVEEEGIDQLEEAIAALFFKGEIEAGDMTYVSNVRHIALLHQAHKTISDAIEAAEME 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D+I  ++      LG+I G    + LL+ +FS+FC+GK
Sbjct: 421 VPVDMIQIDVTRTWELLGEIIGDTADDGLLNQLFSQFCLGK 461


>gi|260584383|ref|ZP_05852130.1| tRNA modification GTPase TrmE [Granulicatella elegans ATCC 700633]
 gi|260157901|gb|EEW92970.1| tRNA modification GTPase TrmE [Granulicatella elegans ATCC 700633]
          Length = 476

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 160/470 (34%), Positives = 260/470 (55%), Gaps = 38/470 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKA-SLRYFFGLD 57
           M  E +TI A+ST     AI I+R+SG     +   I  C  K+   +K  ++ Y   +D
Sbjct: 15  MQTEFDTIAAISTAPGEGAIGIVRISGDLAISIASSIYQCGTKQLEEQKTHTIHYGHIVD 74

Query: 58  ---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
              G + D+ ++ V  +P++FT ED  E + HGGI  +N +L+ + +M   RLA PGEF+
Sbjct: 75  PKSGEVYDEVMVSVLRAPKTFTREDIVEINCHGGIVAINRVLQLVLRM-GARLAEPGEFT 133

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG+IDL +AE++ DLI ++T+   +L+M  + G+LS L      ++ +  + +E 
Sbjct: 134 KRAFLNGRIDLSQAEAVMDLIRAKTDKSMQLAMRQLDGQLSHLIQNLRQEILNTLAQVEV 193

Query: 175 DLDFSEEEDVQNFS-------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           ++D+ E +DV+  +       +++VL  I  L N  S        G+I+R+G K  I+G 
Sbjct: 194 NIDYPEYDDVEEMTLQLLREKTQQVLQGIRALLNTASQ-------GKILRDGLKTAIVGR 246

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKSSL N L +++ AIVTDI GTTRD +   +++ G  +++ DTAGIRETDDIVEK 
Sbjct: 247 PNVGKSSLLNVLLREEKAIVTDIAGTTRDTIEEYVNVRGVPLQLIDTAGIRETDDIVEKI 306

Query: 288 GIKRTFLEVENADLILLL---KEINSKKEISF---PKNIDFIFIGTKSDLYSTYTEE--- 338
           G++R+   ++ AD +LLL    E   +++I      K +  I +  K+DL S  ++E   
Sbjct: 307 GVERSRKALKEADFVLLLLNQSETLQEEDIRLLETTKGMKRIILFNKTDLPSKLSKEDIA 366

Query: 339 -YDHL-----ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYL- 390
            Y  +      S    EG+++L  KI       +  +   +  S+ RH+  L +  + L 
Sbjct: 367 PYAQVEEIVTTSMLNKEGIDQLEEKIAGYFFQGQMNERDATYLSNTRHIALLEKAEQALV 426

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+ +  E    +D+I  +   A   LG+ITG    ++LL  +FS+FC+GK
Sbjct: 427 EVQNGIEMGMPVDLIQIDFTRAWDLLGEITGDSVQDELLTQLFSQFCLGK 476


>gi|168483087|ref|ZP_02708039.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1873-00]
 gi|172043445|gb|EDT51491.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1873-00]
          Length = 457

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 258/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMIGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T   E   L      I
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S    + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E   
Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|294501987|ref|YP_003565687.1| tRNA modification GTPase TrmE [Bacillus megaterium QM B1551]
 gi|294351924|gb|ADE72253.1| tRNA modification GTPase TrmE [Bacillus megaterium QM B1551]
          Length = 462

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/459 (33%), Positives = 248/459 (54%), Gaps = 25/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFG--LDGR-- 59
           +TI A+ST     AI+I+RLSG     + + I K    K     AS    +G  +D +  
Sbjct: 5   DTIAAISTPMGEGAIAIVRLSGEEAITIADRIFKSVSNKRLTDVASHTIHYGHIVDPKTE 64

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++++ +L +   P++FT ED  E + HGGI  VN +L+ L      RLA PGEF++RAF
Sbjct: 65  QVVEEVMLSIMKGPKTFTREDIIEINCHGGIVSVNRVLQ-LVIANGARLAEPGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+
Sbjct: 124 LNGRVDLSQAEAVMDLIRAKTDKAMNMAIGQMEGRLSKLVRHLRQEILETLAHVEVNIDY 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     ++ +I   +     G+I+R G   VI+G  N GKSSL N+
Sbjct: 184 PEYDDVEEMTHQVLIEKASNVRQEIDKLLQTSHQGKILREGLATVIIGRPNVGKSSLLNS 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +   AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 244 LVQDAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQYLKE 303

Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY------DHLI--- 343
           ADLILL+   N       KK     K +D I I  K+DL      E       DH +   
Sbjct: 304 ADLILLVLNFNEELTDEDKKLFEAVKGMDVIVIVNKTDLEQKINLEEVQQFAGDHPVVTT 363

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
           S    +G+++L   I ++      +    +  S+ RH+  L+Q    ++ A    E    
Sbjct: 364 SLLQEQGIDQLEEAIAALFFGGTIESQDLTYLSNTRHIALLTQARGAIDEAITGIESGVP 423

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI+  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 424 IDIVQIDLTRTWELLGEIIGDAVHESLIDQLFSQFCLGK 462


>gi|225870695|ref|YP_002746642.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. equi 4047]
 gi|225700099|emb|CAW94188.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. equi 4047]
          Length = 458

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 153/462 (33%), Positives = 256/462 (55%), Gaps = 28/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG     + + I K K      AS    +G     
Sbjct: 3   ITKEFDTIAAISTPLGEGAIGIVRLSGTKALDIAKSIFKGKD-LTTVASHTLNYGHIIKP 61

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G ++D+ ++ V  +P++FT ED  E + HGGIAV N IL+ L K    R+A PGEF++
Sbjct: 62  STGEVIDEVMVSVMLAPKTFTREDVIEINTHGGIAVTNDILQLLIKQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRIDLTQAEAVMDLIRAKTDKAMSIAIKQLDGSLSQLISDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  + +     +  +   +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLRDKTREFQTLLEQLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E D L      I
Sbjct: 301 LQEADLVLLVLNASEKLTEQDKALLALSQDSNRIILLNKTDLEQVI--EKDQLPEEAIPI 358

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK--- 398
           S    + ++ + ++I  I        +   +  S+ RH+  + Q V+ LE  ++NE    
Sbjct: 359 SVLQNQNIDLIEDRINQIFFDHTGLIEQDATYLSNARHISLIEQAVQSLE--AVNEGLAL 416

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L  A   LG+ITG    ++L+  +FS+FC+GK
Sbjct: 417 GMPVDLLQIDLTRAWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|319399917|gb|EFV88163.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis FRI909]
          Length = 459

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K KK      +    +G  +D      
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETDET 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF N
Sbjct: 64  VEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ ++  +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 183 YDDVEDATTDFLLEQSKRIKEEINRLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  AD
Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302

Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343
           LIL +  +N+ + ++          KN D I I  K+DL       E   +I        
Sbjct: 303 LILFV--LNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG++EL  +IK +    + +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|154490812|ref|ZP_02030753.1| hypothetical protein PARMER_00729 [Parabacteroides merdae ATCC
           43184]
 gi|154088560|gb|EDN87604.1| hypothetical protein PARMER_00729 [Parabacteroides merdae ATCC
           43184]
          Length = 460

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 160/463 (34%), Positives = 248/463 (53%), Gaps = 31/463 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKA-SLRYFFGLDGR 59
           ++TI AVST      I++IR+SGP    +C  I       K    +KA +LRY     G 
Sbjct: 2   EDTICAVSTAPGAGGIAVIRISGPEAIAICNTIFVPRTAGKGLLSQKAYTLRYGSIRRGE 61

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P SFTGED+ E   HG + +   I++ L +    R A PGE+++RAF
Sbjct: 62  ELIDEVLIALFRAPHSFTGEDTVEITCHGSVYIQQQIMQLLIER-GCRSALPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +  Q RL++  M G  S       ++L HI S +E +LDF
Sbjct: 121 MNGKMDLSQAEAVADLIASTSAGQHRLALNQMRGGFSHELKNLREQLLHITSLMELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+ E+++     E+      ++  IS   +   +G  I+NG  + I+G +NAGKS+L N 
Sbjct: 181 SDHEELEFADRSELSTLAAHIETVISRLANSFSVGNAIKNGIPVAIIGETNAGKSTLLNV 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET D +E  GI+RTF +++ 
Sbjct: 241 LLNEDKAIVSDIHGTTRDVIEDTINIGGITFRFIDTAGIRETHDAIESIGIERTFQKLDQ 300

Query: 299 ADLILLL-------KEINSKKEISFPKN--IDFIFIGTKSDLYSTY----TEEYDHLISS 345
           AD++L +        +I    E   P++     I +  K+DL +      T+  +++ S 
Sbjct: 301 ADIVLWMIDAADASLQIAQLSEKILPRSEGKQLILVFNKADLLTDRQFKPTDLPENVQSI 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTV----RYLEMASLNE 397
           F      E I+K++ +L         S    I ++ RH   L+  +    R  E  S N 
Sbjct: 361 FISAKKREHIDKLQDLLIQAAHIPSLSSNDVIVTNIRHYEALTHALESIHRVQEGLSANL 420

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                D I+++LR     L  I G V  +Q+L  IF +FCIGK
Sbjct: 421 SG---DFISQDLRECIFHLSDIVGEVTTDQVLGNIFERFCIGK 460


>gi|90194132|gb|ABD92627.1| ThdF [Mannheimia ruminalis]
          Length = 436

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 145/436 (33%), Positives = 238/436 (54%), Gaps = 27/436 (6%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SGP    V + +  K  P PR A+   F   DG +LD+G+ + F +P SFTGE
Sbjct: 7   GVGILRVSGPLAETVAQAVLGKTLP-PRIANYLPFKDEDGTVLDQGIALFFKAPNSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ + ++  LR+A  GEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQVILDLLLKRILQVKGLRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S    + +D + ++R+++EA +DF +EE +   +  ++   LN+
Sbjct: 126 SEQAARSALKSLQGEFSHKINELVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLNE 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+   + +     QG    I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTTR
Sbjct: 185 IIAQLDGVRREAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           DVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL+ +   ++   
Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWEEIAQADHVLLMIDSTEQQADQ 301

Query: 316 F-----------PKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTGEGLEELINKI 358
           F           P N+    I  K DL          +++  + +S+ T  G++ L   +
Sbjct: 302 FRQEWAEFLAKLPANMPVTVIRNKVDLSGEPEGLIQVDDFTMIRLSAQTKVGVDLLREHL 361

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLG 417
           K  +  +         + +RHL  L     +LE   +   +    +++AE LR+   +L 
Sbjct: 362 KKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFLAGELLAEELRMVQNALS 420

Query: 418 KITGCVDVEQLLDIIF 433
           +ITG    + LL  IF
Sbjct: 421 EITGQFTSDDLLGNIF 436


>gi|90194082|gb|ABD92602.1| ThdF [Mannheimia haemolytica]
          Length = 436

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 145/436 (33%), Positives = 238/436 (54%), Gaps = 27/436 (6%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SGP    V + +  K  P PR A+   F   DG +LD+G+ + F +P SFTGE
Sbjct: 7   GVGILRVSGPLAETVAQAVLGKTLP-PRIANYLPFKDEDGTVLDQGIALFFKAPNSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ + ++  LR+A  GEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQVILDLLLKRILQVKGLRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S+     +D + ++R+++EA +DF +EE +   +  ++   LN+
Sbjct: 126 SEQAARSALKSLQGEFSNKINALVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLNE 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+   + +     QG    I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTTR
Sbjct: 185 IIAQLDGVRREAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           DVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL+ +   ++   
Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWEEIAQADHVLLMIDSTEQQADQ 301

Query: 316 F-----------PKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTGEGLEELINKI 358
           F           P N+    I  K DL          +++  + +S+ T  G++ L   +
Sbjct: 302 FRQEWAEFLAKLPANMPVTVIRNKVDLSGEQEGLIQVDDFTMIRLSAQTKVGVDLLREHL 361

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLG 417
           K  +  +         + +RHL  L     +LE   +   +    +++AE LR+   +L 
Sbjct: 362 KKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFLAGELLAEELRMVQNALS 420

Query: 418 KITGCVDVEQLLDIIF 433
           +ITG    + LL  IF
Sbjct: 421 EITGQFTSDDLLGNIF 436


>gi|315659998|ref|ZP_07912856.1| tRNA modification GTPase TrmE [Staphylococcus lugdunensis M23590]
 gi|315494899|gb|EFU83236.1| tRNA modification GTPase TrmE [Staphylococcus lugdunensis M23590]
          Length = 471

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/457 (33%), Positives = 253/457 (55%), Gaps = 23/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K K       S    +G  +D     +
Sbjct: 16  DTITSISTPMGEGAIGIVRLSGPQAIEIGDKLYKGKYKLAEVDSHTINYGHIVDPETNEV 75

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N +LE L      R+A PGE+S+RAF N
Sbjct: 76  VEEVMISVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTHGARMAEPGEYSKRAFLN 134

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+ E
Sbjct: 135 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRKSILEILAQVEVNIDYPE 194

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ +++ +L     +K +I   +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 195 YDDVEDATTEFLLEQSKNIKAEIDKLLETGAQGKIMREGLSTVIVGKPNVGKSSMLNNLI 254

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  AD
Sbjct: 255 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSQAD 314

Query: 301 LILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYSTYT-EEYDHLI--------SS 345
           LIL +   N   +K++ +     KN D I I  K+DL      EE   +I        S 
Sbjct: 315 LILFVLNYNEPLTKEDRTLFEVIKNEDVIVIVNKTDLAQQLNIEEVQEMIGNKPLIQTSM 374

Query: 346 FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
              EG++EL  +I+ +      +    +  S+ RH+  L Q    ++ A    E    +D
Sbjct: 375 LKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHIALLKQARHAIQDAIDAAESGVPMD 434

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +L      LG+I G    ++L++ +FS+FC+GK
Sbjct: 435 MVQIDLTRTWEILGEIIGESASDELINQLFSQFCLGK 471


>gi|115252797|emb|CAK98233.1| putative trna modification gtpase protein [Spiroplasma citri]
          Length = 449

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 150/450 (33%), Positives = 260/450 (57%), Gaps = 17/450 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDK 63
           ++TI A +T  +  AI+IIR+SG   +++   +  KK        + Y +  DG+ I+D+
Sbjct: 3   EDTIIAPATAMVKQAIAIIRMSGVDSYKIINKVFSKK-VIQEGNQIYYGYLRDGKEIIDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            +L  F  P SFTGED  E + HGG+ V N I++ L K    RLAN GEFS+RAF NGK+
Sbjct: 62  VILFCFQKPNSFTGEDIIEINCHGGVLVTNNIIKLLLK-NGARLANKGEFSQRAFLNGKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           +L++ +++ +L+++  +   ++++  +  + + L   + D+L  I + IE ++D+ E + 
Sbjct: 121 NLIQTDAINNLVNATNDTSAKIALNNLQNKNTYLISTYRDELLDIIANIEVNIDYPEYDG 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V + +++E+   +L L+  I+  +   K+G++I +G  ++ILG  N GKSSL NAL  ++
Sbjct: 181 VGDLTTQELNQRLLILEQKINDLVKISKVGKMIDDGINVLILGKPNVGKSSLLNALMNEN 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV+++PGTTRD++   ++L    + I DTAG+RET D +E+ GI++   +V NADLIL
Sbjct: 241 KAIVSELPGTTRDIVEGKINLGPLTLNIIDTAGLRETVDKIEQIGIEKARQQVINADLIL 300

Query: 304 LLKE-----INSKKEIS-FPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEE 353
           ++ +     IN   E+    KN +++ +  K+DL +  T+    + + L+ S     ++ 
Sbjct: 301 IVADNYADLINLNLELKELIKNKEYLLVLNKTDLLNMQTQKKNLQQNILLISALKRDIKS 360

Query: 354 LINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLR 410
           LI+KI ++  + +  K    + S+ + +  L +    ++ A  N    G  +DII  +L 
Sbjct: 361 LIDKILNLYKTAQITKDDQLVLSNIKQISLLEKVANSIKNA-YNNSTSGFPVDIINVDLH 419

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A   LG I G    E LL  IFSK+C+GK
Sbjct: 420 EAWEILGDILGENYEEDLLTTIFSKYCLGK 449


>gi|225856671|ref|YP_002738182.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae P1031]
 gi|225725175|gb|ACO21027.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae P1031]
          Length = 457

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 258/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T   E   L      I
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S    + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E   
Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|309356576|emb|CAP36954.2| hypothetical protein CBG_19762 [Caenorhabditis briggsae AF16]
          Length = 448

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 152/461 (32%), Positives = 253/461 (54%), Gaps = 42/461 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+S+G LPSAI++ R+SGP    +   + ++K   P+       +    RI+D+ + 
Sbjct: 3   TIFALSSGTLPSAIAVFRVSGPQSLPILRQLSRRKVWTPKMMEFTKLYDSQRRIIDESMA 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP P++FTGED+AEF +HG  AV       L+++ N+R A  GEF+RRAF NGK+ + 
Sbjct: 63  VYFPGPKTFTGEDTAEFFLHGSQAVAQKFATCLSEIENVREAKRGEFTRRAFHNGKMSIS 122

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID-------KLTHIRSFIEADLDFS 179
           E   L  LI S TE +RR +   M G   ++  +W++       KL  I S +   +DF 
Sbjct: 123 EVRGLDRLIRSRTEKERRAAFGQMRGGTRAVEIRWLENFENFSKKLVEILSKLFVIIDFG 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   ++  ++++ + +IL    +I+  I   +  E  + G +IV+ G  N+GKSS+ N L
Sbjct: 183 EHVALELSAAQKDVAEIL---AEINRLILAWEGAERAQRGLEIVLYGRPNSGKSSILNQL 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVEN 298
           A  DVAIV++IPGTTRD L   + + G   +++DTAGIR  T+D++E EGI+R    +E+
Sbjct: 240 AHDDVAIVSEIPGTTRDSLVTTIQINGIRCRLTDTAGIRPHTNDVIEAEGIRRAQRRLES 299

Query: 299 ADLILLLKEINSK-----------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---HLIS 344
           AD+I  + +  S+           K++  P++   + +  K+DL   Y E      H++S
Sbjct: 300 ADVICFVVDPESRSDDVANILEDVKKLKNPES-KVLIVKNKADLKLPYPEVSSSGIHVVS 358

Query: 345 SF--TGEGLEELINKIKSILSNKFKKLPFSIPSH--KRHLYHLSQTVRYLEMASLNEK-D 399
           S   + EG ++L   + S++     +  F + +   ++    L+ ++   + A + +  +
Sbjct: 359 SHATSSEGCQKLRETLGSLVDQLCPETNFLLDAELLRKCSDELTCSMLCQDAAIMCQHIE 418

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            GL+ IAE      ++ G +T     E +LD IFS+FCIGK
Sbjct: 419 KGLEHIAE------LTQGTVT-----ESVLDGIFSQFCIGK 448


>gi|254525316|ref|ZP_05137371.1| tRNA modification GTPase TrmE [Stenotrophomonas sp. SKA14]
 gi|219722907|gb|EED41432.1| tRNA modification GTPase TrmE [Stenotrophomonas sp. SKA14]
          Length = 449

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 145/450 (32%), Positives = 239/450 (53%), Gaps = 23/450 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGRILDK 63
           +TI A+++      + ++RLSGP   +          P   PR A        D  ++D 
Sbjct: 8   DTIVAIASAPGAGGVGLLRLSGP---RAAAIANALGAPALRPRHAHYARLRDADDEVIDD 64

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+++ FP+P SFTGE+  E   HG   ++  ++     +   R A PGEFS RAF NGK+
Sbjct: 65  GIVLWFPAPNSFTGEEVVELQGHGSPVLLQQLVARCIAL-GARQARPGEFSERAFLNGKL 123

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI++      R +   + G  S      +++L  +R  +EA +DF++E  
Sbjct: 124 DLAQAEAIADLIAAGDNRAARAARRSLDGVFSRRIEAVLEQLVLLRIHVEAAIDFADEP- 182

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +      +V   +   ++D++      + G  +R+G   V++G  NAGKSSL NALA  +
Sbjct: 183 LDTLGGAQVRRGLEQTRSDLALLRRDAERGRRLRDGLHAVLIGPPNAGKSSLLNALAGSE 242

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRD L   + L+G  + + DTAG+R+  D +E+EG++R  +E+E  DL L
Sbjct: 243 RAIVTDIAGTTRDTLRETIRLDGLELTLVDTAGLRDGGDAIEREGMRRAHVEIERTDLAL 302

Query: 304 LLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYT--EEYDHL-ISSFTGEGL 351
           ++ +               ++ P     ++I  KSDL +     ++ D + +S+ TG GL
Sbjct: 303 IVLDARDPAAGEAALGDAVMAVPHK---VYIHNKSDLLTALPTLDDPDRVFVSAATGAGL 359

Query: 352 EELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           ++L  +++SI S    +++     +  RH+  + +   + + A        L++ AE LR
Sbjct: 360 DDLHARLRSIASAGAGEQVDGEFSARTRHVDAIERAQEHAQRADGELAHEHLELAAEELR 419

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 420 LAHDALGEITGQMSADDLLGRIFSSFCIGK 449


>gi|26554267|ref|NP_758201.1| tRNA modification GTPase TrmE [Mycoplasma penetrans HF-2]
 gi|81747503|sp|Q8EUV6|MNME_MYCPE RecName: Full=tRNA modification GTPase mnmE
 gi|26454276|dbj|BAC44605.1| thiophene and furan oxidation protein-related GTPase [Mycoplasma
           penetrans HF-2]
          Length = 444

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 253/447 (56%), Gaps = 17/447 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T  + SAISIIR+SGP+ +++   I KK+        ++ F   +  I+D+ +
Sbjct: 3   DTITAIATPNINSAISIIRISGPNTYEIVSKITKKEITKTGYTFVKEFIYQNDLIIDEVI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ + +P+SFTGED  E + HGG+ + N IL+ L      RLA  GEF++RAF N K+ L
Sbjct: 63  ILKYVAPKSFTGEDLIEINCHGGVLITNKILD-LILESGARLAENGEFTKRAFLNNKLTL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +A S+ +LI S+T++   LS  G+    +  +    +K+ ++   IE ++D+ E EDV+
Sbjct: 122 RQANSINNLIFSKTDIATNLSSNGIINSNNDFFLDIKEKIFYLIGKIEVNIDYPEYEDVE 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             ++KE   ++  + + ++  I+       + NG  +VI+G  N GKSSL N+L KK+ A
Sbjct: 182 QVTAKEFNLEVKEIIDKLNKTINDFNKVSYLYNGLNVVIVGKPNVGKSSLLNSLIKKNKA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+DI GTTRD++T  ++LEG L+   DTAGIRE+ + +E  GIK+T   ++ ADLIL L
Sbjct: 242 IVSDIKGTTRDLVTESINLEGLLLNFIDTAGIRESKNKIENIGIKKTMASIKEADLILFL 301

Query: 306 ------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
                  +   K+ ++  KN ++I +  KSDL      E   +  S   + ++ L+N+IK
Sbjct: 302 IDDSKKIDKKEKEILNLIKNKNYIIVKNKSDLKVNANSELKGISISALKKDVKPLVNEIK 361

Query: 360 SILSNKFKKLPFSIPSH-----KRHLYHLSQTVRYLEMASLNE-KDCGLDIIAENLRLAS 413
           +      K+  F+I ++        L  + Q +  L+ +  N      LD++ E+L++A 
Sbjct: 362 T----NLKQGDFNIANNLAICSDNELKIIKQVLLVLKKSYANSLSGFPLDLLVEDLKVAY 417

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +  I G  +   ++D +F  FC+GK
Sbjct: 418 EKICTIMGLSEDLNIIDKMFKNFCLGK 444


>gi|303255573|ref|ZP_07341624.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae BS455]
 gi|303260461|ref|ZP_07346429.1| tRNA modification GTPase [Streptococcus pneumoniae SP-BS293]
 gi|303262818|ref|ZP_07348755.1| tRNA modification GTPase [Streptococcus pneumoniae SP14-BS292]
 gi|303265288|ref|ZP_07351198.1| tRNA modification GTPase [Streptococcus pneumoniae BS397]
 gi|303266495|ref|ZP_07352382.1| tRNA modification GTPase [Streptococcus pneumoniae BS457]
 gi|303268386|ref|ZP_07354182.1| tRNA modification GTPase [Streptococcus pneumoniae BS458]
 gi|301801851|emb|CBW34569.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae INV200]
 gi|302597429|gb|EFL64524.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae BS455]
 gi|302636016|gb|EFL66514.1| tRNA modification GTPase [Streptococcus pneumoniae SP14-BS292]
 gi|302638373|gb|EFL68840.1| tRNA modification GTPase [Streptococcus pneumoniae SP-BS293]
 gi|302642107|gb|EFL72458.1| tRNA modification GTPase [Streptococcus pneumoniae BS458]
 gi|302643946|gb|EFL74206.1| tRNA modification GTPase [Streptococcus pneumoniae BS457]
 gi|302645153|gb|EFL75390.1| tRNA modification GTPase [Streptococcus pneumoniae BS397]
          Length = 457

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 258/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTESFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T   E   L      I
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S    + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E   
Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|116516848|ref|YP_816380.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae D39]
 gi|161410748|ref|NP_358514.2| tRNA modification GTPase TrmE [Streptococcus pneumoniae R6]
 gi|168491911|ref|ZP_02716054.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC0288-04]
 gi|32171825|sp|Q8DPZ8|MNME_STRR6 RecName: Full=tRNA modification GTPase mnmE
 gi|122278734|sp|Q04KR8|MNME_STRP2 RecName: Full=tRNA modification GTPase mnmE
 gi|116077424|gb|ABJ55144.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae D39]
 gi|183573804|gb|EDT94332.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC0288-04]
          Length = 457

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T   E   L      I
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S    + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E   
Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDATPDELITQLFSQFCLGK 457


>gi|146319108|ref|YP_001198820.1| tRNA modification GTPase TrmE [Streptococcus suis 05ZYH33]
 gi|146321314|ref|YP_001201025.1| tRNA modification GTPase TrmE [Streptococcus suis 98HAH33]
 gi|253752156|ref|YP_003025297.1| tRNA modification GTPase TrmE [Streptococcus suis SC84]
 gi|166234827|sp|A4W2N6|MNME_STRS2 RecName: Full=tRNA modification GTPase mnmE
 gi|166234829|sp|A4VWD1|MNME_STRSY RecName: Full=tRNA modification GTPase mnmE
 gi|145689914|gb|ABP90420.1| Predicted GTPase [Streptococcus suis 05ZYH33]
 gi|145692120|gb|ABP92625.1| Predicted GTPase [Streptococcus suis 98HAH33]
 gi|251816445|emb|CAZ52081.1| tRNA modification GTPase TrmE [Streptococcus suis SC84]
          Length = 457

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 253/460 (55%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F +   + K K     P   SL Y   +D 
Sbjct: 2   ITKEFDTIAAISTPLGEGAIGIVRLSGTDAFAIASTVFKGKDLATVPSH-SLNYGHAIDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G++LD+ ++    SP++FT ED  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 61  ATGQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+     ++  + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  +++ V    L  +  + + +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDDIVEK G++R+   
Sbjct: 240 LNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           +E ADLILL+   +       +  ++     + I +  K+DL      E D L      I
Sbjct: 300 LEEADLILLVLNASEPLTEQDRNLLAISDMANRIVLLNKTDLEEQI--EVDQLPEDVIRI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DC 400
           S    + ++++  KI  +   +    +   +  S+ RH+  + Q V+ L   +   K   
Sbjct: 358 SVLQNQNIDQIEEKINQLFFENAGLVEQDATYLSNSRHISLIEQAVQSLHAVNDGLKVGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457


>gi|297531687|ref|YP_003672962.1| tRNA modification GTPase TrmE [Geobacillus sp. C56-T3]
 gi|297254939|gb|ADI28385.1| tRNA modification GTPase TrmE [Geobacillus sp. C56-T3]
          Length = 462

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 156/463 (33%), Positives = 259/463 (55%), Gaps = 29/463 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLD- 57
           E +TI A+ST     AI+I+RLSG    ++ + +      K+ K  P   ++ Y   +D 
Sbjct: 3   EFDTIAAISTPMGEGAIAIVRLSGDQAVEIADRLFRSPSGKRLKDVP-SHTIHYGHIIDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             GR++++ ++ V  +P++FT ED  E + HGG   VN +L+ L      RLA PGEF++
Sbjct: 62  KSGRVVEEVMVSVMRAPKTFTREDVVEINCHGGFVSVNRVLQ-LVLANGARLAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    ++++ M G LS L  +    +    + +E +
Sbjct: 121 RAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETLAHVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  + + +     +++  I   +S    G+I+R G   VI+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTPRLLREKAEYVRGQIEKLLSTAAQGKILREGLATVIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+D+VE+ G++R+   
Sbjct: 241 LNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDVVERIGVERSQQM 300

Query: 296 VENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDHLISS---- 345
           ++ ADLILL+    + +  + E  F   + +D I I  K+DL      E    +++    
Sbjct: 301 LKRADLILLVLNYHEPLTEEDERLFAMIEGMDAIVIVNKTDLPRRIDMERVKELAAGRPV 360

Query: 346 -----FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
                   +G++EL   I  +    + +    +  S+ RH+  L Q    +E A L   D
Sbjct: 361 VATSLLHEQGIDELEKAIADLFFGGELEAGDLTYVSNSRHIALLEQAKTAIEDA-LAGID 419

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D++  +LR A   LG+I G    E L+D +F++FC+GK
Sbjct: 420 AGMPVDLVQIDLRRAWELLGEIIGDTVHESLIDQLFAQFCLGK 462


>gi|223043424|ref|ZP_03613470.1| tRNA modification GTPase TrmE [Staphylococcus capitis SK14]
 gi|314934963|ref|ZP_07842322.1| tRNA modification GTPase TrmE [Staphylococcus caprae C87]
 gi|222443213|gb|EEE49312.1| tRNA modification GTPase TrmE [Staphylococcus capitis SK14]
 gi|313652893|gb|EFS16656.1| tRNA modification GTPase TrmE [Staphylococcus caprae C87]
          Length = 459

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 255/459 (55%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR--KASLRYFFGLD---GRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K KK        ++ Y   +D      
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAIEIGDTLYKGKKKLSEVDTHTINYGHIIDPETNET 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF N
Sbjct: 64  VEEVMISVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 183 YDDVEDATTEFLLEQSKNIKEEINRLLETGTQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  AD
Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302

Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343
           LIL +  +N+ + ++          KN D I I  K+DL      +E   +I        
Sbjct: 303 LILFV--LNNNEPLTEDDQTLYEVVKNEDVIVIINKTDLEPRLDIDEVKEMIGDMPLIQT 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG++EL  +I+ +    + +    +  S+ RH+  L Q    ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARHSIQDAIDAAESGVP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|15458528|gb|AAK99724.1| Thiophene and furan oxidation protein [Streptococcus pneumoniae R6]
          Length = 479

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 24  ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 82

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 83  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 141

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 142 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 201

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 202 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 261

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 262 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 321

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T   E   L      I
Sbjct: 322 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 379

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S    + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E   
Sbjct: 380 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 439

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 440 PVDLLQVDLTRTWEILGEITGDATPDELITQLFSQFCLGK 479


>gi|253753982|ref|YP_003027123.1| tRNA modification GTPase TrmE [Streptococcus suis P1/7]
 gi|251820228|emb|CAR46651.1| tRNA modification GTPase TrmE [Streptococcus suis P1/7]
 gi|292558744|gb|ADE31745.1| tRNA modification GTPase TrmE [Streptococcus suis GZ1]
 gi|319758543|gb|ADV70485.1| tRNA modification GTPase TrmE [Streptococcus suis JS14]
          Length = 457

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 253/460 (55%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F +   + K K     P   SL Y   +D 
Sbjct: 2   ITKEFDTITAISTPLGEGAIGIVRLSGTDAFAIASTVFKGKDLATVPSH-SLNYGHAIDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G++LD+ ++    SP++FT ED  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 61  ATGQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+     ++  + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  +++ V    L  +  + + +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDDIVEK G++R+   
Sbjct: 240 LNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           +E ADLILL+   +       +  ++     + I +  K+DL      E D L      I
Sbjct: 300 LEEADLILLVLNASEPLTEQDRNLLAISDMANRIVLLNKTDLEEQI--EVDQLPEDVIRI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DC 400
           S    + ++++  KI  +   +    +   +  S+ RH+  + Q V+ L   +   K   
Sbjct: 358 SVLQNQNIDQIEEKINQLFFENAGLVEQDATYLSNSRHISLIEQAVQSLHAVNDGLKVGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457


>gi|149003876|ref|ZP_01828699.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP14-BS69]
 gi|237650073|ref|ZP_04524325.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CCRI 1974]
 gi|237822158|ref|ZP_04598003.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147758106|gb|EDK65110.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP14-BS69]
 gi|301799983|emb|CBW32573.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae OXC141]
          Length = 457

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T   E   L      I
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S    + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E   
Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|297588067|ref|ZP_06946711.1| tRNA modification GTPase TrmE [Finegoldia magna ATCC 53516]
 gi|297574756|gb|EFH93476.1| tRNA modification GTPase TrmE [Finegoldia magna ATCC 53516]
          Length = 452

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 155/456 (33%), Positives = 260/456 (57%), Gaps = 27/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILD 62
           + I A+S+    + I I+R++G  C  V + + K+        + +  +G    D  I+D
Sbjct: 3   DCIAAISSATGEAGIGIVRMTGEGCVDVLDSVFKRANDNADLINRKMTYGHIVDDNEIVD 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+    +P ++T ED  E + HGG+  V  +LE L      RLA  GEF++RAF NG+
Sbjct: 63  EVLVCYMKAPHTYTREDVVEIYTHGGVVAVRKVLEVLLN-NGARLAEAGEFTKRAFLNGR 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AE++ D+I ++T+    +SM+ + G ++    Q  D+L  + S +E  ++F+E  
Sbjct: 122 IDLSQAEAIIDMIKAKTDKAYSVSMKQLEGSVNRNIKQLRDQLLDMLSHVEYSINFTE-- 179

Query: 183 DVQN-FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           D+Q+   +  VLN+   + + +         G IIR+G    I+G  N GKSSL NAL K
Sbjct: 180 DMQDELDNTPVLNEGKEVLDKLKKLSESANRGRIIRDGINTTIIGKPNVGKSSLLNALLK 239

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDIPGTTRDV+   +DL+G  +KI+DTAGIR+T+DIVEK G++++   + ++DL
Sbjct: 240 ENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAGIRDTEDIVEKIGVEKSVSFISDSDL 299

Query: 302 ILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH--------LISSFT 347
           I+ +    +E +   +K +   ++   I +  K DL   +  ++D          IS   
Sbjct: 300 IIAIFDSSREFDDEDRKILDLIRDKKSIVLLNKIDLDGGF--DFDENLEGIEVIRISIKQ 357

Query: 348 GEGLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDI 404
            EG+E+L NKI  + ++ + +    +I ++ RH   +++ ++ LE +SL++ +CG  +D 
Sbjct: 358 NEGIEDLENKIIEMFNDGYIEANNDNIITNIRHRDIINKAIKSLE-SSLHDMECGVPIDC 416

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +LR A   LG+ITG    + +L+ IFS FCIGK
Sbjct: 417 FEVDLRNAWEILGEITGETVDDDVLNKIFSDFCIGK 452


>gi|332800542|ref|YP_004462041.1| tRNA modification GTPase mnmE [Tepidanaerobacter sp. Re1]
 gi|332698277|gb|AEE92734.1| tRNA modification GTPase mnmE [Tepidanaerobacter sp. Re1]
          Length = 462

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 161/464 (34%), Positives = 256/464 (55%), Gaps = 37/464 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGL---DGR 59
           ETI A+ST      I I+R+SGP  F++ E I K   KK  F  K    Y   +   +  
Sbjct: 7   ETIAAISTAIGEGGIGIVRISGPRAFEIAEKIFKPRIKKSLFEFKNRTLYLGDIVDSNDE 66

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ LL +F +P ++T ED  E + HGG+     IL  L      RLA PGEF++RAF 
Sbjct: 67  IIDEVLLAIFKAPHTYTREDMVEINCHGGLVAQKRILA-LVLDNGARLAEPGEFTKRAFL 125

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I ++T+    ++   ++GE S    +    L ++ + IEA++DF 
Sbjct: 126 NGRIDLSQAEAVIDIIRAKTDRALAVANRRLTGEFSEKISKIRSNLLNVIAHIEANIDFP 185

Query: 180 EE---EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           E+   E    + S+E+ N++L +  D+      G+   I+R G   +ILG++N GKSSL 
Sbjct: 186 EDDIPEAEPEYISQEI-NNVLKMVEDLLRSAGSGR---ILREGLSTLILGNTNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL +++ AIVTDIPGTTRD++   +D++G  +KI DTAGIR+T D VEK GI R    +
Sbjct: 242 NALLQEERAIVTDIPGTTRDIIEEYIDIQGIPIKIIDTAGIRQTTDEVEKIGINRAMKHL 301

Query: 297 ENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL------- 342
           + A+L+LL+ ++      + K+ I    +   I +  K DL     E E   L       
Sbjct: 302 QEAELVLLMIDVSRKLTDDDKRLIELVGDKTTITVINKVDLPVAVDEYEIKKLVPEAKIV 361

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYLEMA-SLN 396
            +S+   EG++EL   I   ++   +K+ F+    I + +R    L ++  +L+ A    
Sbjct: 362 KVSALKQEGIDELKTVIYDTIT---EKMGFTDEGLIVASERQRRILEESREFLKSALCAM 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   ++++  ++R A   LG+ITG    E +++ IF KFCIGK
Sbjct: 419 AEGVPIEMVEIDIRDAWEKLGEITGDTVSEDIINTIFQKFCIGK 462


>gi|56422029|ref|YP_149347.1| tRNA modification GTPase TrmE [Geobacillus kaustophilus HTA426]
 gi|261420902|ref|YP_003254584.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC61]
 gi|319768573|ref|YP_004134074.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC52]
 gi|81346199|sp|Q5KU57|MNME_GEOKA RecName: Full=tRNA modification GTPase mnmE
 gi|56381871|dbj|BAD77779.1| thiophen/furan oxidation protein [Geobacillus kaustophilus HTA426]
 gi|261377359|gb|ACX80102.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC61]
 gi|317113439|gb|ADU95931.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC52]
          Length = 462

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 156/463 (33%), Positives = 259/463 (55%), Gaps = 29/463 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLD- 57
           E +TI A+ST     AI+I+RLSG    ++ + +      K+ K  P   ++ Y   +D 
Sbjct: 3   EFDTIAAISTPMGEGAIAIVRLSGDQAVEIADRLFRSPSGKRLKDVP-SHTIHYGHIIDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             GR++++ ++ V  +P++FT ED  E + HGG   VN +L+ L      RLA PGEF++
Sbjct: 62  KSGRVVEEVMVSVMRAPKTFTREDVVEINCHGGFVSVNRVLQ-LVLANGARLAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    ++++ M G LS L  +    +    + +E +
Sbjct: 121 RAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETLAHVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  + + +     +++  I   +S    G+I+R G   VI+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTPRLLREKAEYVRGQIEKLLSTAAQGKILREGLATVIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+D+VE+ G++R+   
Sbjct: 241 LNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDVVERIGVERSQQM 300

Query: 296 VENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDHLISS---- 345
           ++ ADLILL+    + +  + E  F   + +D I I  K+DL      E    +++    
Sbjct: 301 LKRADLILLVLNYHEPLTEEDERLFAMIEGMDAIVIVNKTDLPRRIDMERVKELAAGRPV 360

Query: 346 -----FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
                   +G++EL   I  +    + +    +  S+ RH+  L Q    +E A L   D
Sbjct: 361 VGTSLLHEQGIDELEKAIADLFFGGELEAGDLTYVSNSRHIALLEQAKTAIEDA-LAGID 419

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D++  +LR A   LG+I G    E L+D +F++FC+GK
Sbjct: 420 AGMPVDLVQIDLRRAWELLGEIIGDTVHESLIDQLFAQFCLGK 462


>gi|168487704|ref|ZP_02712212.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1087-00]
 gi|169834150|ref|YP_001694460.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225861000|ref|YP_002742509.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230463|ref|ZP_06964144.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255333|ref|ZP_06978919.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502963|ref|YP_003724903.1| tRNA modification GTP-binding protein TrmE [Streptococcus
           pneumoniae TCH8431/19A]
 gi|205415808|sp|B1IBH5|MNME_STRPI RecName: Full=tRNA modification GTPase mnmE
 gi|168996652|gb|ACA37264.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183569534|gb|EDT90062.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1087-00]
 gi|225727603|gb|ACO23454.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238558|gb|ADI69689.1| tRNA modification GTP-binding protein TrmE [Streptococcus
           pneumoniae TCH8431/19A]
 gi|327389399|gb|EGE87744.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04375]
 gi|332200613|gb|EGJ14685.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41317]
 gi|332201488|gb|EGJ15558.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47368]
          Length = 457

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T   E   L      I
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S    + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E   
Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|15900887|ref|NP_345491.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae TIGR4]
 gi|111658245|ref|ZP_01408937.1| hypothetical protein SpneT_02000559 [Streptococcus pneumoniae
           TIGR4]
 gi|21363022|sp|Q97R24|MNME_STRPN RecName: Full=tRNA modification GTPase mnmE
 gi|14972489|gb|AAK75131.1| thiophene and furan oxidation protein ThdF [Streptococcus
           pneumoniae TIGR4]
          Length = 457

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 149/458 (32%), Positives = 256/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY-TEEYDH---LISS 345
           ++ ADL+LL+   +       ++ +   +  + I +  K+DL  T  T E       IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQETNRIILLNKTDLPETIETSELPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|159029809|emb|CAO90863.1| trmE [Microcystis aeruginosa PCC 7806]
          Length = 457

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 156/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%)

Query: 1   MNHEKETIFAVSTGALP--SAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL 56
           M +  +TI A++T  +P   +I I+RLSG     +    F  + ++ +    S R  +G 
Sbjct: 1   MLNTGDTIAAIATAIVPEQGSIGIVRLSGSEAVAIARRLFHTRNRQKWQ---SHRLLYGY 57

Query: 57  -----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
                   I+D+ LL++  +P SFT ED  EFH HGGI  V  +L+ L      RLA  G
Sbjct: 58  IRHPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQ-LCLENGARLAQAG 116

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EFS RAF NG+IDL +AES+ DL+ + +    + ++ G+ G+L+            I + 
Sbjct: 117 EFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCLDILAE 176

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           IEA +DF  EED+     + VL+ I  +   ++  ++  + GE++R+G K+ I+G  N G
Sbjct: 177 IEARIDF--EEDLPLLDHEAVLSSIEQVFCQVNLILATAERGELLRSGLKVAIVGRPNVG 234

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NA ++ D AIVTD+PGTTRD++   L + G  V++ DTAGIR   D VE+ G++R
Sbjct: 235 KSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIGVER 294

Query: 292 TFLEVENADLILLLKEINS---KKEISFPKNID---FIFIGTKSDLYST----YTEEYDH 341
           +    ++ADL+LL     S   +++    +++     I +  K DL +     Y  E + 
Sbjct: 295 SRQTAQSADLVLLTVSAESGWTEEDEEIYRSVSDRRLILVINKIDLVNPETVIYPAEIER 354

Query: 342 L--ISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
           +  IS+   +G+E+L   I + + N+  +     +  ++R    L++    LE      +
Sbjct: 355 VVKISAVQNQGIEDLEKTIINAVQNQELQAANLDLAINQRQAAALTRAKIALEQVKKTID 414

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D   D  + +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 415 QDLPFDFWSIDLRTAIQALGEITGEEVTESVLDRIFSRFCIGK 457


>gi|218263821|ref|ZP_03477797.1| hypothetical protein PRABACTJOHN_03487 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222494|gb|EEC95144.1| hypothetical protein PRABACTJOHN_03487 [Parabacteroides johnsonii
           DSM 18315]
          Length = 460

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 158/463 (34%), Positives = 246/463 (53%), Gaps = 31/463 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKA-SLRY-FFGLDG 58
           ++TI AVST      I++IR+SGP    +C  I       K    ++A +LRY     + 
Sbjct: 2   EDTICAVSTAPGAGGIAVIRISGPEAIAICNTIFVPRITGKDLLSQEAYTLRYGSIRRNK 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D  L+ +F +P SFTGED+ E   HG + +   I++ L +    R A PGE+++RAF
Sbjct: 62  ELIDDVLVALFRAPHSFTGEDTVEITCHGSVYIQQQIMQLLIE-SGCRSALPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +  Q RL++  M G  S       ++L HI S +E +LDF
Sbjct: 121 MNGKMDLSQAEAVADLIASTSAGQHRLALNQMRGGFSHELKNLREQLLHITSLMELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+ E+++     E+      ++  IS   +   +G  I+NG  + I+G +NAGKS+L N 
Sbjct: 181 SDHEELEFADRSELSTLATHIETVISRLANSFSVGNAIKNGVPVAIIGETNAGKSTLLNV 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRD++   + L G   +  DTAGIRET D +E  GI+RTF +++ 
Sbjct: 241 LLNEDKAIVSDIHGTTRDIIEDTVSLGGITFRFIDTAGIRETHDAIESIGIERTFQKLDQ 300

Query: 299 ADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYS----TYTEEYDHLISS 345
           AD++L + +           S+K +   K    I +  K+DL +      T+  D++ S 
Sbjct: 301 ADIVLWMIDAADASLQIAQLSEKILPRSKGKQLILVFNKADLLTDRQFKTTDLPDNVQSI 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTV----RYLEMASLNE 397
           F      E I++++ +L         S    I ++ RH   L+  +    R  E  S N 
Sbjct: 361 FISAKKREHIDELQDLLIQAAHIPSLSSNDVIVTNIRHYEALTHALDSIHRVQEGLSANL 420

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                D I+++LR     L  I G V  +Q+L  IF +FCIGK
Sbjct: 421 SG---DFISQDLRECIFHLSDIVGEVTTDQVLGNIFERFCIGK 460


>gi|148984971|ref|ZP_01818214.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP3-BS71]
 gi|182683965|ref|YP_001835712.1| tRNA modification GTPase [Streptococcus pneumoniae CGSP14]
 gi|147922669|gb|EDK73786.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP3-BS71]
 gi|182629299|gb|ACB90247.1| tRNA modification GTPase [Streptococcus pneumoniae CGSP14]
          Length = 479

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 24  ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 82

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 83  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 141

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 142 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 201

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 202 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 261

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 262 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 321

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T   E   L      I
Sbjct: 322 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 379

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S    + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E   
Sbjct: 380 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 439

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 440 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 479


>gi|148988468|ref|ZP_01819915.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP6-BS73]
 gi|147926149|gb|EDK77223.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP6-BS73]
          Length = 457

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSQVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T   E   L      I
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S    + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E   
Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLIEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|293365349|ref|ZP_06612066.1| thiophene and furan oxidation protein ThdF [Streptococcus oralis
           ATCC 35037]
 gi|307703891|ref|ZP_07640832.1| tRNA modification GTPase TrmE [Streptococcus oralis ATCC 35037]
 gi|291316799|gb|EFE57235.1| thiophene and furan oxidation protein ThdF [Streptococcus oralis
           ATCC 35037]
 gi|307622726|gb|EFO01722.1| tRNA modification GTPase TrmE [Streptococcus oralis ATCC 35037]
          Length = 457

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 262/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS  L Y   +D 
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIIDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSRKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY-TEEYDH---LISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL     TEE       IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLQEAIETEELPEDIIRISV 359

Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
                ++++  +I ++   +    +   +  S+ RH+  + + V  L+  ++NE  + G+
Sbjct: 360 LKNRNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|70727675|ref|YP_254591.1| tRNA modification GTPase TrmE [Staphylococcus haemolyticus
           JCSC1435]
 gi|82582308|sp|Q4L2Z2|MNME_STAHJ RecName: Full=tRNA modification GTPase mnmE
 gi|68448401|dbj|BAE05985.1| possible thiophene and furan oxidation protein [Staphylococcus
           haemolyticus JCSC1435]
          Length = 459

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K KK      S    +G  +D     +
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIGDKLYKGKKKLEDVDSHTINYGHIVDPETNEV 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF N
Sbjct: 64  VEEVMISVLRAPRTFTREDIIEINCHGGILTINRILE-LTMTHGARMAEPGEYTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ +++ +L     +KN+I+  +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 183 YDDVEDATTEFLLEQSKKIKNEINLLLETGAQGKIMREGLSTVIVGKPNVGKSSMLNNLI 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  AD
Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302

Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343
           LIL +  +N+ + ++          KN D I I  K+DL       E   +I        
Sbjct: 303 LILFV--LNNNEPLTQEDRTLYEVIKNEDAIVIVNKTDLEQNLDINEVKEMIGDTPLIQT 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG+++L  +I+ +      +    +  S+ RH+  L Q    ++ A    E    
Sbjct: 361 SMLKQEGIDQLELQIRDLFFGGDVQNQDMTYVSNSRHISLLKQARNAIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWELLGEIIGESASDELIDQLFSQFCLGK 459


>gi|322391875|ref|ZP_08065340.1| thiophene and furan oxidation protein ThdF [Streptococcus peroris
           ATCC 700780]
 gi|321145355|gb|EFX40751.1| thiophene and furan oxidation protein ThdF [Streptococcus peroris
           ATCC 700780]
          Length = 457

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 264/460 (57%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS  L Y   +D 
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIIDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    L  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTLEFEQLLTNLLKTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N+L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNSLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY--TEEYDHL--ISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL       E  D +  IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPEAIETAELPDDVIRISV 359

Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  ++NE  + G+
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|148998838|ref|ZP_01826274.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP11-BS70]
 gi|168576255|ref|ZP_02722149.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae MLV-016]
 gi|307067807|ref|YP_003876773.1| putative GTPase [Streptococcus pneumoniae AP200]
 gi|147755265|gb|EDK62316.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP11-BS70]
 gi|183577997|gb|EDT98525.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae MLV-016]
 gi|306409344|gb|ADM84771.1| Predicted GTPase [Streptococcus pneumoniae AP200]
          Length = 457

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 149/459 (32%), Positives = 257/459 (55%), Gaps = 22/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST-----YTEEYDHLIS 344
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T       EE    IS
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEEVIR-IS 358

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
               + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E    
Sbjct: 359 VLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 VDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|162448238|ref|YP_001621370.1| tRNA modification GTPase TrmE [Acholeplasma laidlawii PG-8A]
 gi|189036193|sp|A9NE34|MNME_ACHLI RecName: Full=tRNA modification GTPase mnmE
 gi|161986345|gb|ABX81994.1| tRNA modification GTPase [Acholeplasma laidlawii PG-8A]
          Length = 448

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 159/450 (35%), Positives = 253/450 (56%), Gaps = 20/450 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FGLDGRILD 62
           +TI A++T    + IS+IR+SG         I K K     K+   ++      DG ILD
Sbjct: 4   QTIAAIATPLGTAGISVIRVSGDEAISKVNQIFKGKNLNKVKSHTIHYGHILNEDGSILD 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + ++ VF +P+SFT ED  E   HGGI +   +LE + +   + LA PGEFS+RAF NG+
Sbjct: 64  EVMISVFIAPKSFTKEDVVEISTHGGILITQKVLERILE-TGIELAQPGEFSKRAFLNGR 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AE++ D+I +  E   +++ + ++   SS+      K+  + + IE ++D+ E +
Sbjct: 123 IDLVQAEAIMDIIHATNENAIKVANKALNKATSSMIDNLKSKVLTLIAQIEVNIDYPEYD 182

Query: 183 DVQNFSSKEVL----NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           D     SKE++    ND+L   NDI   +++ K  + IR G K VI+G  N GKSSL NA
Sbjct: 183 DAI-IMSKELIYPRVNDLLDEINDI---LTKSKRTQYIREGVKTVIVGRPNVGKSSLLNA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIV+DI GTTRD +   ++L+G  +++ DTAGIR+  D +EK G+ R+   +  
Sbjct: 239 LLNEERAIVSDIAGTTRDTIDAFVNLDGVTLQLIDTAGIRDALDTIEKIGVDRSRKAIHE 298

Query: 299 ADLILLLKEINSK--KE----ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           A+L+LL+ +++ K  KE    ++  ++ + I IG K DL S    + +  IS+   EGL 
Sbjct: 299 AELVLLVLDLSQKLTKEDEMLLTLTEHKNRIIIGNKKDLPSYLEIDTNVQISTLEKEGLS 358

Query: 353 ELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCGLDIIAENLR 410
            L ++I K++  +      F+  S+ RH+  L +    LE + +    D  +DI A +L 
Sbjct: 359 VLESEILKTLKLDNLVDKDFNYLSNVRHIQKLKEAKTSLESVINAIHHDMPVDIYAVDLT 418

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A   LG+I G      LL  +FSKFC+GK
Sbjct: 419 TAWNRLGEILGNHQYGDLLTELFSKFCLGK 448


>gi|238018228|ref|ZP_04598654.1| hypothetical protein VEIDISOL_00052 [Veillonella dispar ATCC 17748]
 gi|237864699|gb|EEP65989.1| hypothetical protein VEIDISOL_00052 [Veillonella dispar ATCC 17748]
          Length = 461

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 157/463 (33%), Positives = 261/463 (56%), Gaps = 34/463 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58
           +TI A++T      + IIR+SG   F +   + K     P    +  +++Y   +D    
Sbjct: 5   DTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSAGTVPLMDRQNRTIQYGTIVDPGTN 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ L+++   P S+T ED  E   HGGI  V  IL+ L    ++R+A  GEF++RAF
Sbjct: 65  KTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLVNH-DVRMAEAGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I ++TE    L++  + G +SS      ++L  + + +E  +D+
Sbjct: 124 MNGRIDLTQAEAIIDIIEAKTEDSLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTIDY 183

Query: 179 SEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
            EE D+++ +S+EV   L  IL   +D+ S  + G+L   IR+G   VI+G  NAGKSSL
Sbjct: 184 PEE-DIEDVTSQEVREQLEPILKAMDDLLSTANTGRL---IRDGITTVIVGRPNAGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL +++ AIVTDIPGTTRD +   + +EG  +++ DTAGIR+T D VE  G++R    
Sbjct: 240 MNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDY 299

Query: 296 VENADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEEY--DH------ 341
           +  AD++L + + +   + +EI    ++   + I +  KSD+    T+E+  +H      
Sbjct: 300 INKADIVLCVIDGSTPLTPEEIEILTSVSGLNTIVLLNKSDMAQVVTDEHIKEHGNFTAI 359

Query: 342 -LISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             IS+  GEG   L   ++ ++   + K+   ++ S+ RH+  + Q    +E A L+  D
Sbjct: 360 ERISAKEGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEQA-LSSID 418

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D +A +LR A   LG ITG    E ++D +FS+FC+GK
Sbjct: 419 MGMPVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461


>gi|295111068|emb|CBL27818.1| tRNA modification GTPase TrmE [Synergistetes bacterium SGP1]
          Length = 456

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 229/461 (49%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDG- 58
           M+   +T+ A+ST    + I+++R+SG     +   I +   K FP   ++R    LDG 
Sbjct: 1   MHAPSDTVAAISTAWGEAGIAVVRVSGSCAVPLARSILRFGPKGFPPPRTMRLAALLDGA 60

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ L + FP P SFTGED  E H HGG  V    LE L +    R+A PGEF+RRA
Sbjct: 61  DNAIDQVLAVHFPGPHSFTGEDVVEVHTHGGTLVAQLCLEGLLRR-GARMAEPGEFTRRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AES+  +I S +E   R +   +SGE S    Q  D+L  ++  +E  LD
Sbjct: 120 FLNGRMDLSQAESVLGIIRSRSEEALRAAARTLSGEFSEFVRQIRDELLTLQGDLEVGLD 179

Query: 178 FSEEED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           F E+    V      + L  +     D+    S   LG ++R G ++VI G  N GKSSL
Sbjct: 180 FPEDAAPAVDPIGLYDALETLRITLRDLEDRCS---LGLLLREGIRVVISGRPNVGKSSL 236

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL K+  AIVT +PGTTRD++   +   G  +++ DTAG+R   D VE  GI+R    
Sbjct: 237 LNALLKQSRAIVTAVPGTTRDIIEETVTYRGIPIRLVDTAGLRVPSDEVEASGIERARAA 296

Query: 296 VENADLILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
           ++ AD+ L L               + + +++ I      D     T+ DL +   E   
Sbjct: 297 LKQADICLWLLDGSAPLEDADRDYIRSLGTRESIIVLNKADKALAVTEDDLRAIVPEGRT 356

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKD 399
             IS+ TGEGL+ L  +  + ++     L   +    R L  L      + E   + E D
Sbjct: 357 LAISAKTGEGLDAL-KEAIAAIATAGGALDVGLNVTARQLSELRACAEAIAEAQRVLEAD 415

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G D+ A  L  A  +L +  G    + LLD IFS+FC+GK
Sbjct: 416 MGQDVTAALLGTARKALERTLGIAADDDLLDSIFSRFCVGK 456


>gi|51858159|dbj|BAD42317.1| Thiophene and furan oxidation protein [Symbiobacterium thermophilum
           IAM 14863]
          Length = 437

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 150/452 (33%), Positives = 239/452 (52%), Gaps = 49/452 (10%)

Query: 23  IRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGL--DGRILDKGLLIVFPSPESFT 76
           +R+SG    QV E I + ++  P    R  ++ Y + +   G  +D+ L +V   P S+T
Sbjct: 1   MRISGADALQVAERIFRPRRGRPLGCRRSHTVTYGWVVTPGGDRIDEALALVMRGPHSYT 60

Query: 77  GEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLIS 136
           GED  E   HGG   V  +LE+ A     RLA PGEF+RRAF NG++DL +AE++ DLI 
Sbjct: 61  GEDVVELQCHGGQLAVRRVLEQ-ALQAGARLAEPGEFTRRAFLNGRLDLSQAEAVVDLIR 119

Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE-DVQNFSSKEVLND 195
           ++T+     ++  + G L    G+  ++L  + + +EAD+DF E E +VQ  + +EV   
Sbjct: 120 AKTDRAMAAAVAHLRGSLRQAIGRIRERLMEMMAHLEADIDFPELELEVQ--TREEVAAG 177

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
             +   ++   +   + G I+R G + V+ G  N GKSSL N L +++ AIVT IPGTTR
Sbjct: 178 CAWCLGEVERLLGGARTGRILREGLRAVLAGRPNVGKSSLLNRLVRENRAIVTPIPGTTR 237

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----- 310
           DV+   ++L G  V++ DTAG+R TDD VE+ G+ RT   +  A L+L++ +  +     
Sbjct: 238 DVIAEWVELGGVPVQLFDTAGLRPTDDPVERIGVARTHEALAQAHLVLVVVDAAAGLGPE 297

Query: 311 -KKEIS-FPKNIDFIFIGTKSDLYSTYTEEYDHL-----------ISSFTGEGLEELINK 357
            ++ IS  P+    + +  K DL   +  E   L           +S+ TGEG + L  +
Sbjct: 298 DREWISQLPQGAARVGVANKIDLNPAF--ELSALREALGGAPVVGVSAETGEGFDALEAE 355

Query: 358 IKSILSNKF---------KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           +  + +  F          +   +I   + HL     T+         E   G +++A +
Sbjct: 356 VARV-AGAFDASEELLVNARQAEAIRRARNHLRDAQATL---------ESGLGDELVAID 405

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LR A ++LG++TG    E+LLD IFS+FCIGK
Sbjct: 406 LRAAWMALGEVTGETAGEELLDQIFSRFCIGK 437


>gi|113478139|ref|YP_724200.1| tRNA modification GTPase TrmE [Trichodesmium erythraeum IMS101]
 gi|123056073|sp|Q10VJ7|MNME_TRIEI RecName: Full=tRNA modification GTPase mnmE
 gi|110169187|gb|ABG53727.1| tRNA modification GTPase trmE [Trichodesmium erythraeum IMS101]
          Length = 467

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 160/471 (33%), Positives = 261/471 (55%), Gaps = 47/471 (9%)

Query: 5   KETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFF--GLDG 58
           + TI A++T  +P   ++ I+R+SG    ++ +  F    K+ +     L  +      G
Sbjct: 9   RNTIAAIATAIVPQQGSVGIVRMSGSEAMKIAQTLFHAPGKQVWETHHILYGYIRHPHTG 68

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ LL++  +P S+T ED  EFH HGGI  +  +L+ L       LA PGEF+ RAF
Sbjct: 69  QLVDETLLLIMKAPRSYTREDVVEFHCHGGIIAIQQVLQ-LCIEAGAELAQPGEFTLRAF 127

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AES+A+L+ S++    ++++ G+ G+L+S           I + IEA +DF
Sbjct: 128 LNGRLDLTQAESIAELVGSQSPAAAQVALAGLQGKLASPIRHLRACCLDILAEIEARIDF 187

Query: 179 SEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
             EED+      E+   L+DIL    D+S  ++    GE++R G K+ I+G  N GKSSL
Sbjct: 188 --EEDLPPLDESEISQKLDDILV---DLSMVLATASRGELLRTGLKVAIIGRPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NA +  D AIVTD+PGTTRDV+   L + G  V++ DTAGIRET+D VEK G++R+   
Sbjct: 243 LNAWSHSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETEDRVEKIGVERSCQA 302

Query: 296 VENADLILL---------------LKEINSKKEISFPKNIDFIFIGTKSDLYST--YTEE 338
            E+AD++LL                +++  +  I     +D + +   S+L  +  Y E 
Sbjct: 303 AESADIVLLTIDAQVGWTELDEVIYQQVKHRFLILIINKVDQVDL-VHSELIRSIFYPET 361

Query: 339 YDHLISS--FTGEGLEEL----INKIKSILSN-KFKKLPFSIPSHKRHLYHLSQTVRYLE 391
             +++++     +G+EEL    +N +   L N + + L F++  ++R    L++    LE
Sbjct: 362 IKNVVATAAINNQGIEELEAAILNAVN--LDNVQPENLDFAV--NQRQAAALTRAKIALE 417

Query: 392 MASLN--EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LN  + +  LD    +LR +  +LG++TG    E +LDIIFS+FCIGK
Sbjct: 418 QC-LNTIKNNLPLDFWTIDLRGSIYALGEVTGEDVTESVLDIIFSRFCIGK 467


>gi|149182297|ref|ZP_01860776.1| tRNA modification GTPase [Bacillus sp. SG-1]
 gi|148849989|gb|EDL64160.1| tRNA modification GTPase [Bacillus sp. SG-1]
          Length = 461

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 155/464 (33%), Positives = 260/464 (56%), Gaps = 31/464 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG--LD-- 57
           E +TI A+ST     AI+I+RLSG   F + + + K  K       AS    +G  +D  
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDQAFDIADKVFKGIKGNSVHEFASHTINYGHIVDSS 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G ++++ ++ V   P++FT ED  E + HGG+  VN +L+ + K    RLA PGEF++R
Sbjct: 62  TGAVVEEVMMSVMKGPKTFTREDIIEINCHGGLVSVNKVLQLVLK-NGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    +++  M G LS L  +   ++    + +E ++
Sbjct: 121 AFLNGRVDLSQAEAVMDLIRAKTDRAMNVALNQMEGRLSKLIRKLRQEILETLAHVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +   +L    +++++I   +   + G+I+R G   VI+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTHGVLLEKSKYVRDEIEKLLRTSEQGKILREGLSTVIVGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVL 300

Query: 297 ENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDL--------YSTYTEEYD 340
           + ADLILL+  +N   E ++         + +D I I  K+DL              E+ 
Sbjct: 301 KEADLILLV--LNYSDEFTYEDEQLFKAVEGMDVIVIVNKTDLPQKIDMDRVKELAAEHA 358

Query: 341 HLISSFTGE-GLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            + +S   E G++EL   I ++  +   +    +  S+ RH+  L+Q    ++ A +N  
Sbjct: 359 VVTTSLLEEQGIDELEEAISTLFFAGSLEAGDMTYVSNSRHIALLNQAHGAIDEA-INGV 417

Query: 399 DCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + G  +DI   +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 418 EMGTPIDIAQIDLTRTWELLGEIIGESVHESLIDQLFSQFCLGK 461


>gi|218248879|ref|YP_002374250.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8801]
 gi|218169357|gb|ACK68094.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8801]
          Length = 460

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 246/460 (53%), Gaps = 33/460 (7%)

Query: 6   ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56
           ETI A++T  +P   +I I+RLSG     +    F    ++ +    S R  +G      
Sbjct: 9   ETIAAIATAIVPQQGSIGIVRLSGNQAVTIARQLFTAPGQQKW---ESHRILYGYIRHPQ 65

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      +LA PGEF+ R
Sbjct: 66  TQQVIDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQ-LCVEQGAKLAQPGEFTLR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AES+A L+ + +    ++++ G+ G+L+    Q  D+   I + +EA +
Sbjct: 125 AFLNGRIDLTQAESVAQLVGARSPQASQMALAGLQGKLAQPIRQLRDRCLDILAEVEARI 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF  EED+       ++  +  +   + + ++    GE++R G K+ I+G  N GKSSL 
Sbjct: 185 DF--EEDLPPLDENSIIEGLQDILTHVQALLATADRGELLRTGLKVAIVGRPNVGKSSLL 242

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NA ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIRET D VEK G++R+    
Sbjct: 243 NAWSRSDRAIVTDLPGTTRDVVESQLIVGGIPIQVLDTAGIRETADRVEKLGVERSRHVA 302

Query: 297 ENADLILLLKEIN----SKKEISFP--KNIDFIFIGTKSDL----YSTYTEEYDHLISSF 346
             ADL+LL  +      ++ E  +   ++   I +  K DL      ++  +   ++ + 
Sbjct: 303 SQADLVLLTIDAQMGWTTEDEAIYQQVQHRPLILVINKIDLGLADSLSFIPQIKQIVKTV 362

Query: 347 TG--EGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNEKDC 400
               +G+E+L   I  S+ S   +     +  ++R    L++    LE      +N+   
Sbjct: 363 AAQNQGIEQLEKAILASVESQNIQAANLDLAINQRQAAVLTRAKIALEKVQETIVNQ--L 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 421 PLDFWTIDLRAAIQALGEITGEEITESVLDRIFSRFCIGK 460


>gi|289551831|ref|YP_003472735.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
           lugdunensis HKU09-01]
 gi|289181362|gb|ADC88607.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
           lugdunensis HKU09-01]
          Length = 459

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 150/457 (32%), Positives = 253/457 (55%), Gaps = 23/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K K       S    +G  +D     +
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAIEIGDKLYKGKYKLAEVDSHTINYGHIVDPETNEV 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N +LE L      R+A PGE+S+RAF N
Sbjct: 64  VEEVMISVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTHGARMAEPGEYSKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ +++ +L     +K +I   +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 183 YDDVEDATTEFLLEQSKNIKAEIDKLLETGAQGKIMREGLSTVIVGKPNVGKSSMLNNLI 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  AD
Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSQAD 302

Query: 301 LILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYSTYT-EEYDHLI--------SS 345
           LIL +   N   +K++ +     +N D I I  K+DL      EE   +I        S 
Sbjct: 303 LILFVLNYNEPLTKEDRTLFEVIENEDVIVIVNKTDLVQQLNIEEVQEMIGNKPLIQTSM 362

Query: 346 FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
              EG++EL  +I+ +      +    +  S+ RH+  L Q    ++ A    E    +D
Sbjct: 363 LKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHIALLKQARHAIQDAIDAAESGVPMD 422

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +L      LG+I G    ++L++ +FS+FC+GK
Sbjct: 423 MVQIDLTRTWEILGEIIGESASDELINQLFSQFCLGK 459


>gi|90194130|gb|ABD92626.1| ThdF [Mannheimia varigena]
          Length = 436

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 149/437 (34%), Positives = 237/437 (54%), Gaps = 29/437 (6%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SGP    V E +  KK   PR A+   F   DG +LD+G+ + F +P SFTGE
Sbjct: 7   GVGILRVSGPLAETVAEAVVGKKLQ-PRLANYLPFKDEDGTVLDQGIALFFKAPNSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ + ++  +R+A  GEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQVILDLLLKRILQVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S+     +D + ++R+++EA +DF +EE +   +  ++   LND
Sbjct: 126 SEQAARSALKSLQGEFSNKINALVDDVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLND 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+   + +     QG    I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTTR
Sbjct: 185 IIAQLDGVRREAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTR 241

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           DVL   + ++G  + I DTAG+R+  D VE+ GI R + E+  AD +LL+ +   +    
Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIARAWDEIAQADHVLLMIDSTEQTADQ 301

Query: 316 F-----------PKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTGEGLEELINKI 358
           F           P N+    I  K DL          E++  + +S+ T  G++ L   +
Sbjct: 302 FRNEWADFLAKLPANMPVTVIRNKVDLSGEPEGLIQVEDFTMIRLSAQTKVGVDLLREHL 361

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416
           K  +  +         + +RHL  L     +LE     L +   G +++AE LR+   +L
Sbjct: 362 KKSMGYQ-SSTEGGFLARRRHLQALETAADHLERGHIQLTQFFAG-ELLAEELRMVQNAL 419

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 420 SEITGQFTSDDLLGNIF 436


>gi|295669029|ref|XP_002795063.1| tRNA modification GTPase GTPBP3 [Paracoccidioides brasiliensis
           Pb01]
 gi|226285756|gb|EEH41322.1| tRNA modification GTPase GTPBP3 [Paracoccidioides brasiliensis
           Pb01]
          Length = 627

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 123/328 (37%), Positives = 192/328 (58%), Gaps = 29/328 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR-----I 60
           TI+A+ST    +AI+IIR+SGP C Q+ + +C K   P PR ASL   +    R     I
Sbjct: 87  TIYALSTAPGRAAIAIIRVSGPGCVQIYKALCPKSPLPTPRVASLHTLYDPLLRPSINTI 146

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-----------NLRLAN 109
           LD+ +++ FP+P++ TGED  E HVHGG AVV  +L  + +             ++R A 
Sbjct: 147 LDRAMVLYFPAPKTVTGEDLLELHVHGGPAVVKAVLNAIPRCAKVDFTGSNFPLSIRYAE 206

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++ L + E+L++ +S+ETE QRRL++ G S  L++ Y +W  +L   R
Sbjct: 207 PGEFTRRAFLNDRLSLPQIEALSNTLSAETEQQRRLAIRGTSDALATRYERWHQQLISAR 266

Query: 170 SFIEADLDFSEEEDVQNFSSKEVL---NDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
             +EA +DFSE++     + + VL   +++  L   I+ H+     GE++RNG K+ +LG
Sbjct: 267 GEMEALIDFSEDQHFDESAEEFVLSVTDEVRNLVRQINLHVENASKGELLRNGIKVALLG 326

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD---- 282
             NAGKSSL N +  ++ AIV+   GTTRD++ + +D+ G+  K  D AG+R        
Sbjct: 327 APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGFFCKFGDMAGLRPDHSAQVG 386

Query: 283 -----IVEKEGIKRTFLEVENADLILLL 305
                 VEKEGI+R       +D+++++
Sbjct: 387 QMPIGAVEKEGIRRAKARALESDVVIVV 414


>gi|317148818|ref|XP_001822938.2| cytokinesis protein sepA [Aspergillus oryzae RIB40]
          Length = 2209

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 124/322 (38%), Positives = 192/322 (59%), Gaps = 23/322 (7%)

Query: 7    TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFG-----LDGRI 60
            TI+A+ST +  +AI+++R+SGP C ++ + +C K   P PR A++R  F           
Sbjct: 1665 TIYALSTASGRAAIAVVRVSGPGCVRIYQALCPKAALPRPRFAAVRTLFDPTREPSSSSA 1724

Query: 61   LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSR 115
            LD G L++ FP+P + TGED  E H+HGG A+V  +L  ++++      +R A PGEF+R
Sbjct: 1725 LDAGALVLYFPAPNTVTGEDVLELHLHGGPAIVKSVLTAISRVSQPDSLVRYAEPGEFTR 1784

Query: 116  RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
            RAF N ++DL + E+L D +S++TE QRRL++ G S  LS  Y QW  +L + R  +EA 
Sbjct: 1785 RAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSRRYEQWRQQLLYARGELEAL 1844

Query: 176  LDFSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
            +DF+E++     S + VL+    +  L+  +  HI     GE++R+G KI +LG  NAGK
Sbjct: 1845 IDFAEDQHFDESSDELVLSVAAQVQALRVQVGFHIQNASKGELLRHGIKIALLGAPNAGK 1904

Query: 233  SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---------DI 283
            SSL N +  K+ AIV+   GTTRD++ + +DL G+  K+ D AGIR              
Sbjct: 1905 SSLLNQIVGKEAAIVSTEEGTTRDIVDVGVDLSGWYCKLGDMAGIRSEPVNGKESVVIGA 1964

Query: 284  VEKEGIKRTFLEVENADLILLL 305
            VEKEGI+R       +D+++++
Sbjct: 1965 VEKEGIRRAKARALESDVVIVV 1986



 Score = 41.6 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 5/44 (11%)

Query: 402  LDII--AENLRLASVSLGKITG---CVDVEQLLDIIFSKFCIGK 440
            +DI+  AE+LR A+ +L KITG     DVE +L ++F KFC+GK
Sbjct: 2166 IDIVTAAEHLRFAADALAKITGKGESGDVEDVLGVVFEKFCVGK 2209


>gi|254478023|ref|ZP_05091407.1| tRNA modification GTPase TrmE [Carboxydibrachium pacificum DSM
           12653]
 gi|214036027|gb|EEB76717.1| tRNA modification GTPase TrmE [Carboxydibrachium pacificum DSM
           12653]
          Length = 460

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 159/471 (33%), Positives = 256/471 (54%), Gaps = 46/471 (9%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGL 56
           E +TI A+ST    + I I+R+SG     +   I +   P+ +K        +L Y   +
Sbjct: 2   EFDTIAAISTSPGEAGIGIVRISGDRALDIISRIFR---PYKKKDVKNVKTHTLHYGHIV 58

Query: 57  D---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           D   G + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF
Sbjct: 59  DPDTGEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEF 117

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG+IDL +AE++ D+I+++T +  + + + +SG L     +  D++  + + + 
Sbjct: 118 TKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGYLGQKMRKLKDRMMELLAHLL 177

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF E+ DV      ++L     +  +I   I+  + G IIR G K  I+G  N GKS
Sbjct: 178 ALIDFPED-DVDELERWQMLESAKEILKEIEKLIASAESGRIIREGLKTAIIGKPNVGKS 236

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NAL K++ AIVTDIPGTTRD++   L+++G  +++ DTAGIR+TD++VEK G++R+ 
Sbjct: 237 SLLNALLKENRAIVTDIPGTTRDIIEEYLNVKGIPIRLIDTAGIRDTDELVEKIGVERSK 296

Query: 294 LEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
             +  ADL+L +  I++ +E+S            KNI  IF+  K DL     EE    +
Sbjct: 297 EVLGEADLVLFV--IDASRELSKEDYEIFDILTGKNI--IFVLNKIDLPKKIDEEE---L 349

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS-------------IPSHKRHLYHLSQTVRYL 390
            + T +G+   ++ +K I   K ++  ++             I ++ RH   L    +Y+
Sbjct: 350 RNLTKDGIIVEVSTVKKIGLEKLEETIYNLVFKGNVTIGNEEIITNTRHKEALINAKKYM 409

Query: 391 E-MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E +    EK    D+I  +L  A   +GKITG    E ++D IF +FC+GK
Sbjct: 410 ESVVEAIEKGYSEDLITIDLNSALNEIGKITGETATEDVIDQIFERFCVGK 460


>gi|326390368|ref|ZP_08211927.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993645|gb|EGD52078.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus JW
           200]
          Length = 462

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 163/461 (35%), Positives = 250/461 (54%), Gaps = 30/461 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRYFFGLDGR-- 59
           +TI A+ST    + I I+R+SG    ++   I K  KP   K     +L Y   +D    
Sbjct: 6   DTIAAISTFPGEAGIGIVRISGDDALEIISKIFKPYKPKNIKKVKSHTLHYGHIVDPETE 65

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++RAF
Sbjct: 66  EVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I+++T +  + + + +SG +     +  DK+  +   + A +DF
Sbjct: 125 LNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLVHLLALIDF 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E+ DV+    KE+L     +  DI   I+  + G IIR G K  I+G  N GKSSL NA
Sbjct: 185 PED-DVEELERKEMLETAKEIVEDIDKLIASSESGMIIREGLKTAIIGKPNVGKSSLLNA 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   +  
Sbjct: 244 LLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAE 303

Query: 299 ADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL------- 342
           ADLIL        L KE     +I   KNI  +F+  K DL     E E  +L       
Sbjct: 304 ADLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIII 361

Query: 343 -ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKD 399
            +S+    GL+EL + I + +           I ++ RH   L    +Y+E +    E++
Sbjct: 362 EVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIERE 421

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D+I  +L  A   +GKITG    E L++ IF +FC+GK
Sbjct: 422 YSEDLITIDLNAALEQIGKITGETATEDLINQIFERFCVGK 462


>gi|225849761|ref|YP_002729995.1| tRNA modification GTPase TrmE [Persephonella marina EX-H1]
 gi|225645890|gb|ACO04076.1| tRNA modification GTPase TrmE [Persephonella marina EX-H1]
          Length = 452

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 256/456 (56%), Gaps = 26/456 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRI 60
           K+TI A +T  +PSA+SIIR+SG    ++   + +  +    +   R +FG      G +
Sbjct: 3   KDTIVANATPLIPSAVSIIRISGDRALEIGRKLFRLPESIRER---RVYFGKITDSKGSV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GL I F  P SFTGED  E + HG + VV  I+EE   +   R A PGEF++RAF N
Sbjct: 60  IDEGLFIFFKGPRSFTGEDVVEIYPHGSVPVVKKIIEEAVNL-GARFAQPGEFTKRAFIN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL +AE++ADLI + +E   R+++  + G+LS    +  + L ++ S IEA+++F E
Sbjct: 119 GKIDLTQAEAIADLIEARSEKASRVAVNILEGKLSEKVKELRNSLLYLVSLIEAEINFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             DV+     ++   +  +   I   +   + GEIIR G K+ I+G  N GKSSLFNAL 
Sbjct: 179 --DVEEIDPDQIKKGLEHVIKGIDDLLRTYRKGEIIREGIKLAIVGRPNVGKSSLFNALV 236

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIV++  GTTRD +   + ++G  VK+ DTAG+RET+D +E  GIK+   ++E AD
Sbjct: 237 GYERAIVSEYRGTTRDFIEETVSIKGIPVKLLDTAGLRETEDKIELIGIKKAKEKIEEAD 296

Query: 301 LILLLKEIN---SKKEISFPKNIDF---IFIGTKSDLYS-----TYTEEYDHLISSFTGE 349
           +++ + +++   + +++   + I +   I +G KSDL +      + ++Y      F   
Sbjct: 297 VVIFVFDLSEGLTDEDLRIYEQIKYKDPIVVGNKSDLVNEKELDIFRKKYYFKNVLFVST 356

Query: 350 GLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDI 404
            L++ ++ ++  + +K   +  S   I  + RH   L +    L+  + +++E     +I
Sbjct: 357 KLQKNLDHLEEEIFHKLGIIEDSDSEIYINLRHYKALEKAKNILKKTVQNIDELIDFKEI 416

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   +  A   L +ITG +  E +L+ IFS+FCIGK
Sbjct: 417 LMLEISEAEKYLEEITGEITTEDVLENIFSRFCIGK 452


>gi|294794209|ref|ZP_06759345.1| tRNA modification GTPase TrmE [Veillonella sp. 3_1_44]
 gi|294454539|gb|EFG22912.1| tRNA modification GTPase TrmE [Veillonella sp. 3_1_44]
          Length = 461

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 257/460 (55%), Gaps = 28/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58
           +TI A++T      + IIR+SG   F +   + K     P    +  +++Y   +D    
Sbjct: 5   DTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSTGTVPLMDRQNRTIQYGTIVDPMTN 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ L+++   P S+T ED  E   HGGI  V  IL+ L    N+R+A  GEF++RAF
Sbjct: 65  KTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLVNH-NVRMAEAGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I ++TE    L++  + G +SS      ++L  + + +E  +D+
Sbjct: 124 MNGRIDLTQAEAIIDIIEAKTEDSLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTIDY 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            EE D+++ +S+EV + +  +   +   +S    G +IR+G   VI+G  NAGKSSL NA
Sbjct: 184 PEE-DIEDVTSQEVRDQLQPILKAMEDLLSTANTGRLIRDGITTVIVGCPNAGKSSLMNA 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDIPGTTRD +   + +EG  +++ DTAGIR+T D VE  G++R    +  
Sbjct: 243 LLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYINK 302

Query: 299 ADLILLLKEINS---KKEISFPKNI---DFIFIGTKSDLYSTYTEE--YDH-------LI 343
           AD++L + + ++    +EI    ++   + I +  KSD+    T+E   +H        I
Sbjct: 303 ADIVLCVIDGSTPLNPEEIEILTSVSGLNTIVLLNKSDVAQVVTDENIKEHGNFTAIERI 362

Query: 344 SSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           S+  GEG   L   ++ ++   + K+   ++ S+ RH+  + Q    +E A L+  D G+
Sbjct: 363 SAKEGEGSAVLSKWVQELVYGGRVKQDNRAMISNVRHISLMEQAKAQVEQA-LSSIDMGM 421

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D +A +LR A   LG ITG    E ++D +FS+FC+GK
Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461


>gi|312794739|ref|YP_004027662.1| tRNA modification gtpase trme [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181879|gb|ADQ42049.1| tRNA modification GTPase TrmE [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 455

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 163/459 (35%), Positives = 247/459 (53%), Gaps = 27/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFP-RKASLRYFFGLD 57
           E +TI A+ST      I I+R+SG   F + E + + +K       P R A+L   +  D
Sbjct: 2   EFDTIAAISTPIGTGGIGIVRISGKDAFDIAEKLIRSRKYKSIKDIPARYAALVDVYDGD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +LI F SP S+TGED  E   HGG+ V+  ILE   K    R A PGEF++RA
Sbjct: 62  -EFVDEAILIKFKSPHSYTGEDIVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+S+T + ++ + + + G LS    +    L ++ + IEA +D
Sbjct: 120 FLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNLVASIEASID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE E V      E+L+ +      I   +   + G+ I++G   VI+G  N GKSSL N
Sbjct: 180 FSEHE-VDEVPHTEILSTVDAALQKIDKLLKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K++ AIVTDIPGTTRDV+   LD+EG  + ++DTAG+R+T+D+VEK G+K+T   +E
Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAGVRKTEDVVEKIGVKKTLESIE 298

Query: 298 NADLILLLKE--------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
            ADL+L + E              I  K+ I     ID     +  D+   + +E   + 
Sbjct: 299 RADLVLFMIESSGILQEDLEIFETIKDKRFIVLVNKIDKEVKVSHEDIKRIFGKE--GIF 356

Query: 344 SSFTGEGLEELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            S   +   EL+ K     +L    +     + ++ RH   L +   +L  A  N     
Sbjct: 357 ISVEHDKNLELVEKAIANEVLDKDIEAFDSVLITNLRHKELLLKAKEFLLSAKENLDCVP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LDI++ +++ A  SL +ITG    E ++D IFS FCIGK
Sbjct: 417 LDILSIDIKNALESLYQITGKNVTEDMVDRIFSMFCIGK 455


>gi|296452686|ref|ZP_06894377.1| tRNA modification GTPase TrmE [Clostridium difficile NAP08]
 gi|296880062|ref|ZP_06904031.1| tRNA modification GTPase TrmE [Clostridium difficile NAP07]
 gi|296258468|gb|EFH05372.1| tRNA modification GTPase TrmE [Clostridium difficile NAP08]
 gi|296428929|gb|EFH14807.1| tRNA modification GTPase TrmE [Clostridium difficile NAP07]
          Length = 462

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 165/457 (36%), Positives = 253/457 (55%), Gaps = 24/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-I 60
           +TI A++T      I I+R+SG    +V E I K    K      K +L Y   +D   I
Sbjct: 8   DTIAAIATAPGEGGIGILRISGERALKVAEEIFKSMSGKSIEEYNKRTLIYGNIVDKENI 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL     P S+TGED  E + HGG   V  ILE L    ++RLA  GEF++RAF N
Sbjct: 68  IDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILE-LILSKDVRLAEAGEFTKRAFLN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I ++T++   ++   + G LS    +  DK+T I + +E  +D+ E
Sbjct: 127 GRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHVEVAIDYPE 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+++ + + + +    LK +I       + G+I+R G K VI+G  N GKSSL N++ 
Sbjct: 187 E-DIEHITYQTLKDKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNSIL 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDIPGTTRDV+   ++++G  +KI DTAGIR+TDDIVEK G++R+     +AD
Sbjct: 246 GENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVERSKESFTSAD 305

Query: 301 LILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYSTYTEE----YDH-----LISS 345
           LI+++ + +   S+++I      K+   I +  K+DL     EE    Y        IS+
Sbjct: 306 LIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIEEEKILKYVENNSIIKISA 365

Query: 346 FTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
              EG+EEL +KI+S++     K     + ++ RH   LS+  +    A +  E+    D
Sbjct: 366 LQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAYKSATDALIALEQSMPFD 425

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  +L+     LG I G    E LLD IF  FCIGK
Sbjct: 426 FVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 462


>gi|76811890|ref|YP_331723.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710b]
 gi|254186626|ref|ZP_04893143.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pasteur
           52237]
 gi|254261025|ref|ZP_04952079.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710a]
 gi|123600728|sp|Q3JXI0|MNME_BURP1 RecName: Full=tRNA modification GTPase mnmE
 gi|76581343|gb|ABA50818.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710b]
 gi|157934311|gb|EDO89981.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pasteur
           52237]
 gi|254219714|gb|EET09098.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710a]
          Length = 467

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 156/468 (33%), Positives = 242/468 (51%), Gaps = 36/468 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           + + I A++T +    I ++RLS       +   + + +C  +   PR AS   F    G
Sbjct: 5   DSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGARL-MPRHASYVPFLDGAG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115
             LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   LRLA PGEF+R
Sbjct: 64  EPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + +E   R +   + G  S      +D +  +R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASSEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAGLRETEDEVEKIGIARTWGE 302

Query: 296 VENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLY------------STYT 336
           +E AD++L L +  S            FP  +  + +  K+DL             +   
Sbjct: 303 IERADVVLHLLDARSGLGPGDEAIAARFPDGVPVVRVLNKTDLTGAPASVTRTGGGAARA 362

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRYLEM 392
           +  +  +S+  G+G++ L  ++  I   +       + + +RHL  L    +   R  E 
Sbjct: 363 DVCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHLARAAEH 421

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  N +   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 422 AEQNAQ--ALDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFCIGK 467


>gi|303240051|ref|ZP_07326572.1| tRNA modification GTPase TrmE [Acetivibrio cellulolyticus CD2]
 gi|302592320|gb|EFL62047.1| tRNA modification GTPase TrmE [Acetivibrio cellulolyticus CD2]
          Length = 460

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 160/471 (33%), Positives = 259/471 (54%), Gaps = 42/471 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           M + ++TI A+ST      I IIRLSG   F++ E I + KK F +  +    +G  +D 
Sbjct: 1   MLYNEDTITAISTPHGNGGIGIIRLSGERAFEISEGIFQGKKDFDKVKTHTINYGKIIDS 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G +LD+ L+     P +FT ED  E + HGG  V+  ILE + K    RLA PGEF++
Sbjct: 61  STGEVLDEVLISKMCKPNTFTREDVVEINCHGGTVVLKNILELILK-KGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI+++T    + +++ + G+LS    +   KL  + + IE  
Sbjct: 120 RAFLNGRIDLSQAEAVIDLINAKTNESSKAAVDQLEGKLSVKLKEARSKLIELIAHIEVT 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E  D++  + +++  +I  +K  +SS I   + G IIR G   VI+G  N GKSSL
Sbjct: 180 VDYPEH-DIEEITGQKIYTEIKDIKEKLSSIIEGFEKGRIIREGINAVIVGRPNVGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  K  AIVTDIPGTTRD++   ++L G  V+I DTAGIRET+D+VEK G+++T  E
Sbjct: 239 LNELTGKSRAIVTDIPGTTRDIIEDYINLNGVPVRIIDTAGIRETEDVVEKIGVEKTHKE 298

Query: 296 VENADLILLLKE------------------------INSKKEISFPKNIDFIF-IGTKSD 330
           V++ADLI+++ +                        +N    +S  K +D    +G K+ 
Sbjct: 299 VDSADLIIMMIDADQGVNQEDIDILNKIKEKKAIIILNKIDMVSEDKILDIENKLGNKNV 358

Query: 331 LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
           +  +  E+     ++  G  + EL  K +  ++N+       + ++ RH   + + +  +
Sbjct: 359 IRMSLKEDVG---TADLGNAVVELFMKGEVSINNEV------LITNIRHKNLIDKAIESI 409

Query: 391 EMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + A   +E    LD+I  ++  ++  LG+ITG    E ++  IFS+FC+GK
Sbjct: 410 DFAIGAHESGMPLDMITIDIVNSAQYLGEITGESVSEDVMHEIFSRFCLGK 460


>gi|168334919|ref|ZP_02693039.1| tRNA modification GTPase TrmE [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 443

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 149/444 (33%), Positives = 248/444 (55%), Gaps = 13/444 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDKG 64
           +TI A+ST      I +IR+SG S   +   I  K     +  ++ Y + + DG I+D+ 
Sbjct: 4   DTIAAISTPVGQGGIGVIRVSGSSAISIVNKIFTKNLNNKKSHTIHYGYIVSDGLIIDEV 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+++  +P++FT ED  E + HGG  V+N +LE L  +   RLA  GEF++RAF NG+ID
Sbjct: 64  LVMLMKAPKTFTREDIVEVNCHGGYVVLNRVLE-LLLVNGARLATAGEFTKRAFLNGRID 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L + E++ D+IS++T +    +   + G LS    ++ + L  I + IE  +D+ E ++ 
Sbjct: 123 LSQVEAIMDIISAKTNLSLAQATSQLMGNLSKNIKKYQNILLEIIARIEVSIDYPEYDEA 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +   S     DI  L  D+ + +     G+IIR G  + I+G  N GKSSL NAL ++D 
Sbjct: 183 E-LISDGFEEDITRLIADLKAILETAATGKIIREGAVVTIVGRPNVGKSSLLNALLEEDK 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRD+++    +EG    + DTAGIR+T D VE+ G++R+   +E +DL+++
Sbjct: 242 AIVTNIAGTTRDIVSEHFSVEGVPFILQDTAGIRDTADAVERIGVERSKEAIEKSDLVIM 301

Query: 305 LKEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           L +   K  I      +  KN + +F+  K D    Y+++    IS+ TGEG++EL   +
Sbjct: 302 LLDATEKISIEEVDLMTMLKNRNTLFVVNKIDCVDKYSDDDKIFISATTGEGIDELKAAM 361

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSL 416
           K+ +      +  ++ S+ R    LS  +  LE    +  + G  +D +A +L+ A   L
Sbjct: 362 KAAVVQNL-TMGTAVISNIRQKTALSCAIEALEKVE-DAINAGFSVDFLAIDLQDAYSHL 419

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G I G    E++++ +F +FC+GK
Sbjct: 420 GMIIGEEVKEEIINGLFERFCLGK 443


>gi|126701303|ref|YP_001090200.1| tRNA modification GTPase TrmE [Clostridium difficile 630]
 gi|255102894|ref|ZP_05331871.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-63q42]
 gi|255308714|ref|ZP_05352885.1| tRNA modification GTPase TrmE [Clostridium difficile ATCC 43255]
 gi|123362962|sp|Q181S7|MNME_CLOD6 RecName: Full=tRNA modification GTPase mnmE
 gi|115252740|emb|CAJ70585.1| transfer RNA modification GTPase MnmE [Clostridium difficile]
          Length = 459

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 165/457 (36%), Positives = 252/457 (55%), Gaps = 24/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-I 60
           +TI A++T      I I+R+SG    +V E I K    K      K +L Y   +D   I
Sbjct: 5   DTIAAIATAPGEGGIGILRISGEKALKVAEEIFKSMSGKSIEEYNKRTLIYGNIVDNENI 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL     P S+TGED  E + HGG   V  ILE L    ++RLA  GEF++RAF N
Sbjct: 65  IDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILE-LILSKDVRLAEAGEFTKRAFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I ++T++   ++   + G LS    +  DK+T I + +E  +D+ E
Sbjct: 124 GRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHVEVAIDYPE 183

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+++ + + +      LK DI       + G+I+R G K VI+G  N GKSSL N++ 
Sbjct: 184 E-DIEHITYQTLKEKTDELKKDIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNSIL 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDIPGTTRDV+   ++++G  +KI DTAGIR+TDDIVEK G++++     +AD
Sbjct: 243 GENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVEKSKESFTSAD 302

Query: 301 LILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYSTYTEE----YDH-----LISS 345
           LI+++ + +   S+++I      K+   I +  K+DL     EE    Y        IS+
Sbjct: 303 LIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIEEEKILKYVENNSIIKISA 362

Query: 346 FTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
              EG+EEL +KI+S++     K     + ++ RH   LS+  +    A +  E+    D
Sbjct: 363 LQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAYKSATDALIALEQSMPFD 422

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  +L+     LG I G    E LLD IF  FCIGK
Sbjct: 423 FVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 459


>gi|186684424|ref|YP_001867620.1| tRNA modification GTPase TrmE [Nostoc punctiforme PCC 73102]
 gi|186466876|gb|ACC82677.1| tRNA modification GTPase TrmE [Nostoc punctiforme PCC 73102]
          Length = 464

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 152/461 (32%), Positives = 241/461 (52%), Gaps = 33/461 (7%)

Query: 7   TIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----D 57
           TI A++T  +P   ++ I+R+SG     + +  F    ++ +    S +  +G       
Sbjct: 10  TIAAIATAVVPQQGSVGIVRVSGSEAMALAQTLFHAPGRQVWE---SHQILYGYIRHPQT 66

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ RA
Sbjct: 67  QQLVDEALLLIMKAPRSYTREDVVEFHCHGGIMAVQQVLQ-LCLENGARLAQPGEFTLRA 125

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE +ADL+ +++    + ++ G+ G+L+    Q       I + IEA +D
Sbjct: 126 FLNGRLDLTQAEGIADLVGAKSPQAAQTALAGLQGKLAHSIRQLRANCLDILAEIEARID 185

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F  EED+     K ++++I  +  +I+  ++    GE++R G K+ I+G  N GKSSL N
Sbjct: 186 F--EEDLPPLDDKAIISEIEKIAAEITRLLATKDKGELLRTGLKVAIVGRPNVGKSSLLN 243

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           A ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIRET D VEK G++R+     
Sbjct: 244 AWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETTDQVEKIGVERSRRAAN 303

Query: 298 NADLILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
            ADL+LL                +++  +  I     ID +    +  L S        +
Sbjct: 304 AADLVLLTIDASAGWTEGDREIYEQVQHRPLILVINKIDLVEERQRKTLQSQIPNPNSKI 363

Query: 343 ISSFT-GEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
            ++    +G++ L   I  I+ + K +     +  ++R    L+Q    LE       + 
Sbjct: 364 ATAAAQNQGIDALEVAILEIVKAEKIQAADMDLAINQRQAAALTQAKISLEQVQTTIVQH 423

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LD    +LR A  +LG ITG    E +LD IFSKFCIGK
Sbjct: 424 LPLDFWTIDLRGAIQALGAITGEEVTESVLDRIFSKFCIGK 464


>gi|270292694|ref|ZP_06198905.1| thiophene and furan oxidation protein ThdF [Streptococcus sp. M143]
 gi|270278673|gb|EFA24519.1| thiophene and furan oxidation protein ThdF [Streptococcus sp. M143]
          Length = 475

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 152/462 (32%), Positives = 265/462 (57%), Gaps = 28/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS  L Y   +D 
Sbjct: 20  ITREFDTIVAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 78

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 79  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 137

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 138 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 197

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 198 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 257

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 258 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 317

Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDH---LI 343
           ++ ADL+LL+  +N+ ++++          ++ + I +  K+DL  +  T E       I
Sbjct: 318 LKEADLVLLV--LNASEQLTAQDRQLLEISQDTNRIILLNKTDLPEAIETSELPEDVIRI 375

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DC 400
           S    + ++++  +I  +   +    +   +  S+ RH+  + + V  L+  ++NE  + 
Sbjct: 376 SVLKNQNIDKIEERINDLFFENAGLVEQDATYLSNARHISLIKKAVESLQ--AVNEGLEL 433

Query: 401 GL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G+  D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 434 GMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 475


>gi|325288104|ref|YP_004263894.1| tRNA modification GTPase mnmE [Cellulophaga lytica DSM 7489]
 gi|324323558|gb|ADY31023.1| tRNA modification GTPase mnmE [Cellulophaga lytica DSM 7489]
          Length = 478

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 158/462 (34%), Positives = 254/462 (54%), Gaps = 29/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVC--EFICKKKKPFPRKASLRYFFG--LDG-R 59
           ++TI A++T +   AI++IRLSGP    +   +F   + K   ++ +     G  +DG +
Sbjct: 20  QDTIVALATPSGAGAIAVIRLSGPDAITLANAKFKSVRNKDLTKQKTHTIHLGHIVDGTK 79

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           + D+ L+ +F  P S+TGE+  E   HG   +    + +L      R+A+ GEF+ RAF 
Sbjct: 80  VYDEVLVSLFKGPNSYTGENVIEISCHGSQYIQQ-QIIQLFLRNGCRMADAGEFTLRAFL 138

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S+ E   +++M+ M G  SS   +  ++L +  S IE +LDF+
Sbjct: 139 NGKLDLSQAEAVADLIASDNEASHQIAMQQMRGGFSSEIKKLREELLNFASLIELELDFA 198

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE DV+     + +  +  ++  +   I    +G +++NG  + I+G  N GKS+L NA 
Sbjct: 199 EE-DVEFADRTQFITLLSRIQEVLKRLIDSFAVGNVLKNGIPVAIVGEPNVGKSTLLNAF 257

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIV+DI GTTRD +  ++ + G   +  DTAGIRET D+VE  GIK+TF ++E A
Sbjct: 258 LNEDRAIVSDIAGTTRDTIEDEIAIGGIGFRFIDTAGIRETTDVVESIGIKKTFEKIEQA 317

Query: 300 DLILLLKEINS--------KKEISFPKNI----DFIFIGTKSDLYSTYTEEYDH------ 341
            ++L L  +          K EI   KN       + I  K DLY+    E         
Sbjct: 318 QVVLYLSPLTPAIENLESIKVEIERIKNQFPLKTLVVITNKKDLYTPEQIETIEAEIPST 377

Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
             IS+ TG+G+E L NK+   ++    +   +I ++ RH   L +++  +E   L   D 
Sbjct: 378 LFISAKTGDGVETLKNKLLEFVNTGALRNNETIVTNTRHFDALLKSLEGIERVQLG-MDG 436

Query: 401 GL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G+  D++A +L+ A   LG+ITG V  ++LL  IF+ FCIGK
Sbjct: 437 GISGDLLAIDLKDALYHLGEITGQVSNDELLGNIFANFCIGK 478


>gi|242372605|ref|ZP_04818179.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
           M23864:W1]
 gi|242349660|gb|EES41261.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
           M23864:W1]
          Length = 459

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 253/459 (55%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR--KASLRYFFGLD---GRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K KK        ++ Y   +D      
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAIEIGDTLYKGKKKLAEVDTHTINYGHIVDPETNET 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF N
Sbjct: 64  VEEVMISVLRAPKTFTKEDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L       +  I + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKGQRQSILEILAQVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 183 YDDVEDATTEFLLEQSKNIKEEINRLLETGTQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  AD
Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302

Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343
           LIL +  +N+ + ++          KN D I I  K+DL       E   +I        
Sbjct: 303 LILFV--LNNNEPLTEDDQTLYEVIKNEDVIVIINKTDLEQRLDMNEVKEMIGDMPLIQT 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG++EL  +I+ +    + +    +  S+ RH+  L Q    ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARHSIQDAIDAAESGVP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|319938848|ref|ZP_08013212.1| tRNA modification GTPase mnmE [Streptococcus anginosus 1_2_62CV]
 gi|319811898|gb|EFW08164.1| tRNA modification GTPase mnmE [Streptococcus anginosus 1_2_62CV]
          Length = 457

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 258/466 (55%), Gaps = 36/466 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K      + +L Y   +D  
Sbjct: 2   ITKEFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKDLSTVASHTLNYGHIIDPE 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  KNEILDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +       +  ++  +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTKLLREKTAEFEKLLTQLLKTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIR+TDDIVE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG-- 348
           ++ADL+LL+   +       +K +   ++ + I +  K+DL      E D L   F    
Sbjct: 301 QDADLVLLVLNASEPLTEQDRKLLEISQDTNRILLLNKTDLEEKI--EVDKLPDDFIKIS 358

Query: 349 -------EGLEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
                  + +EE IN++      I+      L     S+ RH+  + + V  L+  ++NE
Sbjct: 359 VLQNQNIDKIEERINQLFFENAGIIEQDATYL-----SNARHISLIEKAVESLQ--AVNE 411

Query: 398 K-DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D G+  D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 412 GLDLGMPVDLVQVDLTRTWEILGEITGDAAPDELISQLFSQFCLGK 457


>gi|259048142|ref|ZP_05738543.1| tRNA modification GTPase TrmE [Granulicatella adiacens ATCC 49175]
 gi|259035203|gb|EEW36458.1| tRNA modification GTPase TrmE [Granulicatella adiacens ATCC 49175]
          Length = 462

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 150/466 (32%), Positives = 255/466 (54%), Gaps = 30/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFG---- 55
           M  E +TI A+ST     AI I+R+SG    ++ + + + K+K    + S    +G    
Sbjct: 1   MQTEFDTIAAISTAPGEGAIGIVRISGEDAIRIADEVYRLKEKRLNEQPSHTIHYGHIVD 60

Query: 56  -LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             +  ++D+ ++ V  +P++FT ED  E + HGGI  +N IL+ L      RLA PGEF+
Sbjct: 61  PKNDEVIDEVMVTVLRAPKTFTREDVVEINCHGGIVAINRILQ-LVLRRGARLAEPGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG+IDL +AE++ DLI ++T+   +++M  + GELS L      ++ +  + +E 
Sbjct: 120 KRAFLNGRIDLSQAEAVMDLIRAKTDKSMQMAMRQLDGELSKLIQNLRQEILNTLAQVEV 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  + + +      +   I + ++    G+I+R+G K  I+G  N GKSS
Sbjct: 180 NIDYPEYDDVEEMTLQLLREKTQQVSQGIRALLNTASQGKILRDGLKAAIVGRPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRD +   +++ G  +++ DTAGIRETDD+VE+ G++R+  
Sbjct: 240 LLNVLLREEKAIVTDIAGTTRDTIEEYVNVRGVPLQLIDTAGIRETDDVVERIGVERSRK 299

Query: 295 EVENADLILLLKEINSKKEIS------FPKNIDF--IFIGTKSDLYSTY---------TE 337
            +  AD +LL+  +N  +E+         +  DF  I +  K+DL +           T+
Sbjct: 300 ALNEADFVLLI--LNQSEELRDEDLRLLEQTKDFKRIILLNKTDLPTKIDMDKVKEFATD 357

Query: 338 EYDHLISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                 S    EG+++L  KI       +  +   +  S+ RH+  L +  + L+  + N
Sbjct: 358 SEIVTTSMLKKEGIDQLEEKIADYFFQGQMNERDATYLSNTRHIALLEKAEQALQEVA-N 416

Query: 397 EKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D G+  D+I  +   A   LG+ITG    ++LL  +FS+FC+GK
Sbjct: 417 GVDMGMPVDLIQIDFTRAWDLLGEITGDTVQDELLTQLFSQFCLGK 462


>gi|15616624|ref|NP_244930.1| tRNA modification GTPase TrmE [Bacillus halodurans C-125]
 gi|14195295|sp|Q9RCA7|MNME_BACHD RecName: Full=tRNA modification GTPase mnmE
 gi|5672642|dbj|BAA82680.1| 77%-identity [Bacillus halodurans]
 gi|10176687|dbj|BAB07781.1| thiophen and furan oxidation [Bacillus halodurans C-125]
          Length = 458

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 155/459 (33%), Positives = 253/459 (55%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGR-- 59
           E +TI A+ST     AI I+RLSG    Q+ + + + KKP     S    +G  +D +  
Sbjct: 2   EFDTIAAISTALGEGAIGIVRLSGDEAVQLADRVYRGKKPLQEVPSHTIVYGHIVDPKTD 61

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ ++ V  +P +FT ED  E + HGG+  VN +L+ L      RLA PGEF++RAF
Sbjct: 62  EIIDEVMVSVLRAPRTFTREDVIEINCHGGLVSVNRVLQ-LVLNHGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE + DLI ++T+    ++++ + G LS+        L    + +E ++D+
Sbjct: 121 LNGRIDLSQAEGVIDLIRAKTDRAMNVALKQVEGRLSTKISSLRQALLETVAHVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D +  +   + +   F++ +I   +   + G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEY-DAETMTLDMLKDRAQFVRKEIDKLLMTAQQGKILREGLSTVIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 240 LVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSREVLKE 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYS----TYTEEYDH-----LI 343
           A+LILL+    +E++ + E  F     ++ I I  K+D+      T   E          
Sbjct: 300 AELILLVLNFGEELSKEDEALFEAISGMEAIVIVNKTDVEQKIDLTRVRELAAGRPVITT 359

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    +G++EL   I S+   +  +    +  S+ RH+  L Q  R +E A    E D  
Sbjct: 360 SIVQDQGIDELEAAIASLFFESGIESGDVTYVSNSRHIALLEQAKRAVEDALEAIEMDVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++  A   LG+I G    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDITRAWELLGEIIGDSVHESLIDQLFSQFCLGK 458


>gi|322376714|ref|ZP_08051207.1| tRNA modification GTPase TrmE [Streptococcus sp. M334]
 gi|321282521|gb|EFX59528.1| tRNA modification GTPase TrmE [Streptococcus sp. M334]
          Length = 457

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 263/460 (57%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS  L Y   +D 
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTESFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345
           ++ ADL+LL+   +       ++ +   +  + I +  K+DL  +  TEE       IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQETNRIILLNKTDLPEAIETEELPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  ++NE  + G+
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|189502543|ref|YP_001958260.1| hypothetical protein Aasi_1201 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|226704778|sp|B3ETH9|MNME_AMOA5 RecName: Full=tRNA modification GTPase mnmE
 gi|189497984|gb|ACE06531.1| hypothetical protein Aasi_1201 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 455

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 156/460 (33%), Positives = 256/460 (55%), Gaps = 25/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LD 57
           M H++E I A++T A  SAI++IRLSG +   +   + K K    ++ S    FG     
Sbjct: 1   MLHQQEPIIALATPAGKSAIAVIRLSGQNVISIVNQVFKGKD-LNQQPSHTIHFGTINYQ 59

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ++D+ L+ +F +P SFT EDS E   HG   ++  I++   ++  +RLA PGEF++RA
Sbjct: 60  GEMIDEVLIALFKAPRSFTQEDSVEISCHGSSYIIQKIMQLFMEL-GIRLAKPGEFTQRA 118

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+ DL++AE++ADLI+++T +  + +++ M G  S+      +KL H+ + +E +LD
Sbjct: 119 FLNGRFDLIQAEAVADLIAADTAIAHKTALQQMRGGFSTQLQALREKLIHVGALLELELD 178

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+ EEDV  F+ + +L  ++  L   I   I    LG +I+NG  I I+G  N GKS+L 
Sbjct: 179 FA-EEDVA-FADRAMLESLIQELLTIIGKLIQSFSLGNVIKNGLPIAIVGKPNVGKSTLL 236

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLE 295
           NAL +++ AIV+ IPGTTRD +  ++++ G   +  DTAG+RE T D +E  GI RT   
Sbjct: 237 NALLQEERAIVSPIPGTTRDFIEAEINIGGIHCRFIDTAGLREHTTDTIESIGIARTKER 296

Query: 296 VENADLILLLKEINSKKEISFPKNID--------FIFIGTK-----SDLYSTYTEEYDHL 342
           ++ A LI+ + +++ +   +    I+        +I +G K      DL    ++E    
Sbjct: 297 MQQAGLIIYVFDLSDESLATIQNAIEGISELGIPYIKVGNKLDAAQPDLLKALSQEDFVF 356

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           IS+   + L +L  +I  +          +I  + RH   L ++   L +A +     GL
Sbjct: 357 ISTAKKQHLGQLEARILELFQLDQLDNSDTIVVNTRHYESLVKSQNAL-LAVVEGIINGL 415

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++  +L+     LG+ITG +  E LLD +FSKFCIGK
Sbjct: 416 SNELLMIDLKQTLYYLGEITGEITTEDLLDDLFSKFCIGK 455


>gi|253755917|ref|YP_003029057.1| tRNA modification GTPase TrmE [Streptococcus suis BM407]
 gi|251818381|emb|CAZ56209.1| tRNA modification GTPase TrmE [Streptococcus suis BM407]
          Length = 457

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 253/460 (55%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F +   + K K     P   SL Y   +D 
Sbjct: 2   ITKEFDTITAISTPLGEGAIGIVRLSGTDAFAIASTVFKGKDLATVPSH-SLNYGHVIDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G++LD+ ++    SP++FT ED  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 61  ATGQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+     ++  + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  +++ V    L  +  + + +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDDIVEK G++R+   
Sbjct: 240 LNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           +E ADLILL+   +       +  ++     + I +  K+DL      E D L      I
Sbjct: 300 LEEADLILLVLNASEPLTEQDRNLLAISDMANRIVLLNKTDLEEQI--EVDQLPEDVIRI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DC 400
           S    + ++++  KI  +   +    +   +  S+ RH+  + Q V+ L   +   K   
Sbjct: 358 SVLQNQNIDQIEEKINQLFFENAGLVEQDATYLSNSRHISLIEQAVQSLHAVNDGLKVGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457


>gi|225868377|ref|YP_002744325.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701653|emb|CAW98957.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
           zooepidemicus]
          Length = 458

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 152/462 (32%), Positives = 256/462 (55%), Gaps = 28/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG     + + I K K      AS    +G     
Sbjct: 3   ITKEFDTIAAISTPLGEGAIGIVRLSGTKALDIAKSIFKGKD-LTTVASHTLNYGHIIRP 61

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G ++D+ ++ V  +P++FT ED  E + HGGIAV N IL+ L K    R+A PGEF++
Sbjct: 62  STGEVIDEVMVSVMLAPKTFTREDVIEINTHGGIAVTNDILQLLIKQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRIDLTQAEAVMDLIRAKTDKAMSIAIKQLDGSLSQLITNTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  + +     +  +   +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLRDKTQEFQALLEQLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E D L      I
Sbjct: 301 LQEADLVLLVLNASEKLTEQDKALLALSQDSNRIILLNKTDLEQVI--EKDQLPEEAIPI 358

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK--- 398
           S    + ++ + ++I  +        +   +  S+ RH+  + Q V+ LE  ++NE    
Sbjct: 359 SVLQNQNIDLIEDRINQLFFDHTGLIEQDATYLSNARHISLIEQAVQSLE--AVNEGLAL 416

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L  A   LG+ITG    ++L+  +FS+FC+GK
Sbjct: 417 GMPVDLLQIDLTRAWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|322387781|ref|ZP_08061390.1| thiophene and furan oxidation protein ThdF [Streptococcus infantis
           ATCC 700779]
 gi|321141648|gb|EFX37144.1| thiophene and furan oxidation protein ThdF [Streptococcus infantis
           ATCC 700779]
          Length = 457

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 148/460 (32%), Positives = 263/460 (57%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSELINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLKTARRGKILREGIATAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDVVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY--TEEYDHL--ISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL      +E  D +  IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPEAIETSELPDDVIRISV 359

Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  ++NE  + G+
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|258648360|ref|ZP_05735829.1| tRNA modification GTPase TrmE [Prevotella tannerae ATCC 51259]
 gi|260851527|gb|EEX71396.1| tRNA modification GTPase TrmE [Prevotella tannerae ATCC 51259]
          Length = 442

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 154/453 (33%), Positives = 249/453 (54%), Gaps = 30/453 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T A   AI I+RLSG     + E I  +      K +  +    +G ILD+ +
Sbjct: 2   ETICAIAT-APGGAIGIVRLSGDDAISLTEKILDRN--LQEKVTYAHILD-NGEILDEVI 57

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           + +F  P S+TGE++AE   HG   ++   +E L      + A PGEF++RAF N K+DL
Sbjct: 58  VTIFRQPHSYTGENTAEISCHGSPYILQRTMELLIAQ-GCKPARPGEFTQRAFLNHKMDL 116

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE++ADLI++ ++ Q++++M+ M G  S    +  D+L HI S +E +LDFS+ ED++
Sbjct: 117 SRAEAVADLIAARSKAQQKMAMQQMRGNFSKSLSELRDQLLHITSLLELELDFSDHEDLE 176

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                E++     ++  +SS ++  KLG  I++G  + I+G +NAGKS+L NAL  ++ A
Sbjct: 177 FADRSELIALAKTIEEKVSSLLNSFKLGNAIKHGVPVAIVGKTNAGKSTLLNALVGEERA 236

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           +V+DI GTTRD +   +++ G L +  DTAGIR TDDIVE  GI+RTF  +  AD+IL +
Sbjct: 237 LVSDINGTTRDTIEDIVNIGGTLFRFIDTAGIRRTDDIVETMGIERTFQTIAKADIILWV 296

Query: 306 KEINSKKEI------SFPKNID---FIFIGTKSDLY--STYTEEYDHL-ISSFTGEGLEE 353
            +    K++         ++ D    I +  K+DL       +  D + IS+    G+++
Sbjct: 297 IDAQDSKDVLKELEQQMRQHCDSKKLICVFNKTDLQIPQYIPKGIDTVSISAKKNIGMDK 356

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAE 407
           L + +K  +S         I S+ RH   L +        SL     GL      + +++
Sbjct: 357 LRDLLK--VSTDIAPAEDVIVSNIRHYEALCEA-----RTSLERVQSGLINHLSGEFVSQ 409

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LR    SL +I G +  + +L+ IFS FC+GK
Sbjct: 410 DLRACIQSLSEIVGDITSQSVLNNIFSHFCVGK 442


>gi|154300747|ref|XP_001550788.1| hypothetical protein BC1G_10673 [Botryotinia fuckeliana B05.10]
 gi|150856421|gb|EDN31613.1| hypothetical protein BC1G_10673 [Botryotinia fuckeliana B05.10]
          Length = 525

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 161/487 (33%), Positives = 248/487 (50%), Gaps = 92/487 (18%)

Query: 37  ICKKKK-PFPRKASLRYFFGLDG---RILDK-GLLIVFPSPESFTGEDSAEFHVHGGIAV 91
           +C  K  P PR A++R  +        ILD   L++ FP+P + TGED  E HVHGG A 
Sbjct: 48  LCPSKSIPRPRYAAVRTLYEPANSIPNILDSDALVLYFPAPNTVTGEDVLELHVHGGSAT 107

Query: 92  VNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSME 148
           V  +L  +++  +   +R A PGEF+RRAF+N ++DL + E+L+D +S+ETE QRR ++ 
Sbjct: 108 VKAVLSTISQCTSAAKIRYAEPGEFTRRAFQNDRLDLAQVEALSDTLSAETEQQRRAAVR 167

Query: 149 GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF--SSKEVLNDILF----LKND 202
           G SG+L   Y  W ++L + R  +EA +DFSE+   Q+F  S  E+L+++      +   
Sbjct: 168 GNSGKLGRTYEAWREQLLYARGELEALIDFSED---QHFDESPAELLSNVTAQVETMLEL 224

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           I++H S    GE+++ G +I +LG  NAGKSSL N +  ++ +IV+   GTTRD++ + L
Sbjct: 225 IAAHESASHRGELLKKGIRIALLGPPNAGKSSLLNQIVGREASIVSQEAGTTRDIVEVGL 284

Query: 263 DLEGYLVKISDTAGIR---------ETDDI---VEKEGIKRTFLEVENADLILLL----- 305
           D+ GYL   +DTAG+R           D I   +E+EGI+R   +   +DLI+ L     
Sbjct: 285 DIRGYLCTFADTAGLRTQASQIGSGNNDSIIGDIEREGIRRAKSKANESDLIVALASIEW 344

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            +I +  EI + +  +   I  ++  +     + D    S T E L ELIN  K     K
Sbjct: 345 SDIRNGWEIRYDQ--ETFEIAARASKFMIVINKSD----SVTPEILSELINDFKESQKGK 398

Query: 366 FKKLPF----------------------------------SIPSHKRHLYHLSQTVRYLE 391
           F + P                                   S+P+    L  +++  R L 
Sbjct: 399 FDQYPVPLMSISCKDAQGLTNKGSIGHFVDEMVSVFSNMTSLPTELVDLLGVTERQRQLL 458

Query: 392 MAS-------LNEK------DCGLDII--AENLRLASVSLGKITG---CVDVEQLLDIIF 433
            A        +NE       D   DI+  AE+LR A+  L +ITG     DVE++L ++F
Sbjct: 459 TACSAHLLDFMNEAQEHVDHDQEADIVLAAEHLRSAANCLSRITGRGEAGDVEEVLGVVF 518

Query: 434 SKFCIGK 440
            KFC+GK
Sbjct: 519 EKFCVGK 525


>gi|258512903|ref|YP_003186337.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479629|gb|ACV59948.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 465

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 148/464 (31%), Positives = 245/464 (52%), Gaps = 31/464 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFGLD-- 57
            +++TI A++T    +++ I+R+SG     V E + + K+  P K     +RY   +D  
Sbjct: 7   EQEDTIAAIATAVGEASVGIVRVSGRGARDVGERLVRSKRGLPVKLGERGMRYGQVIDPK 66

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM-PNLRLANPGEFSR 115
            G ++D+ +++  P P S+TGED  E  VHGG   V  +L  LA +    R+A PGEF++
Sbjct: 67  SGDVIDEAIVLWMPGPHSYTGEDVLELQVHGGTYAVEEVL--LACLEAGARMAEPGEFTK 124

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T    +L+   + G           +L  + + +E  
Sbjct: 125 RAFLNGRIDLSQAEAVIDLIRAKTAFAGKLAERQVRGRFGEAVRALRRRLLELEAHVEVT 184

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E  DV++ +   V++    +  +I + I   +LG ++R+G    I+G  N GKSSL
Sbjct: 185 IDYPEH-DVEDVACDHVVSVCEGMMGEIDALIRSAELGRVLRDGVATAIVGRPNVGKSSL 243

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL +++ AIVTD+PGTTRDVL   ++L G  +++ DTAGIRET+D+VE+ G+ R+   
Sbjct: 244 LNALVERERAIVTDLPGTTRDVLEEYINLRGIPLRLIDTAGIRETEDVVERIGVARSRQS 303

Query: 296 VENADLILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
           ++ A+L+LL+               +E +  + I     +D       +        E  
Sbjct: 304 MQEAELVLLVLDGSEPPSPEDEAIARESDGSRRIVVLNKVDRGIHPDAARFADELAPEGA 363

Query: 341 HLISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
             +S+  G GL+ L    +NKI+  L+        +    KR L    + +R    A+  
Sbjct: 364 VRVSAREGTGLDTLRDAMVNKIRRDLAIDLDASYMANHRQKRLLEEAKEDLRTARDAA-- 421

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +    LD++A  L+ A   LG+  G    E LL+ IFS+FC+GK
Sbjct: 422 QAGATLDLVAVALQSAYEKLGETIGEEAGEDLLNEIFSRFCLGK 465


>gi|315222529|ref|ZP_07864418.1| tRNA modification GTPase TrmE [Streptococcus anginosus F0211]
 gi|315188215|gb|EFU21941.1| tRNA modification GTPase TrmE [Streptococcus anginosus F0211]
          Length = 457

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 151/461 (32%), Positives = 259/461 (56%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG + F + + I K K      + +L Y   +D  
Sbjct: 2   ITKEFDTIAAISTPLGEGAIGIVRLSGTNSFAIAQKIFKGKDLSTVASHTLNYGHIIDPE 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  KNEILDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +       +  ++  +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTKLLREKTAEFEKLLTQLLKTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIR+TDDIVE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           ++ADL+LL+   +       +K +   ++ + I +  K+DL      E D L      IS
Sbjct: 301 QDADLVLLVLNASEPLTEQDRKLLEISQDTNRILLLNKTDLEEKI--EVDQLPDDFIKIS 358

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCG 401
               + ++++  +I  +   +    +   +  S+ RH+  + + V  L   ++NE  D G
Sbjct: 359 VLQNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKAVESLH--AVNEGLDLG 416

Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 417 MPVDLVQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|315613122|ref|ZP_07888032.1| tRNA modification GTPase TrmE [Streptococcus sanguinis ATCC 49296]
 gi|315314684|gb|EFU62726.1| tRNA modification GTPase TrmE [Streptococcus sanguinis ATCC 49296]
          Length = 471

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 265/460 (57%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS  L Y   +D 
Sbjct: 16  ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIIDP 74

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++ V  SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 75  QTGKVMDEVMVGVMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 133

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 134 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 193

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 194 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 253

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIR+TDDIVE+ G++R+   
Sbjct: 254 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGVERSKKA 313

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  +  T E       IS 
Sbjct: 314 LKEADLVLLVLNASDPLTAQDRQLLEISQDTNRIILLNKTDLPEAIETSELPEDVIRISV 373

Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++++ ++I ++   +    +   +  S+ RH+  + + V  L+  ++NE  + G+
Sbjct: 374 LKNQNIDKIEDRINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 431

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 432 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 471


>gi|32490761|ref|NP_871015.1| tRNA modification GTPase TrmE [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340464|sp|Q8D3I9|MNME_WIGBR RecName: Full=tRNA modification GTPase mnmE
 gi|25165967|dbj|BAC24158.1| thdF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 453

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 167/461 (36%), Positives = 252/461 (54%), Gaps = 34/461 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           +K++I A++T      I IIR+SG    ++ + I  K+ P  ++A    F+  +G  LD+
Sbjct: 3   KKDSIVAIATPPGKGGIGIIRVSGNLSVKIAK-IFLKRLPKEKQAEYIPFYSKNGNTLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F SP+S TGED  EF  HG    +N +L+E+  +  +RLA PGEF  RAF NGKI
Sbjct: 62  GIALFFKSPKSLTGEDVLEFQAHGSPVALNFLLQEILSIKGMRLAKPGEFLERAFINGKI 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE+++DLI+S +    + ++  + G  S      I  +  +R  IE D+DFSEE  
Sbjct: 122 DLIQAEAISDLINSCSIQAAKSALISIRGYFSKKINNLILSIKKLRMKIEVDIDFSEE-- 179

Query: 184 VQNFSS------KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             NF+       K  L  I+   N I    ++   G I++ G KIVI+G  N+GKSS+FN
Sbjct: 180 --NFNKISIECIKHDLEKIILNINKIQCSFNR---GAILKEGSKIVIIGKPNSGKSSIFN 234

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L+  + AIVT I GTTRD+L   + L+   + I DTAG+R+TDD +EK GI R   E++
Sbjct: 235 ILSGNNNAIVTSIEGTTRDILHEHIYLDNIPLHIYDTAGLRKTDDKIEKIGILRALKEIK 294

Query: 298 NADLILLLKEINSKK----EISFPK---NI--DFIFIGTKSDLYSTYTE----EYDHLI- 343
            +D ILL+ + N  K     + +PK   NI      I  K DL     E    + +++I 
Sbjct: 295 TSDHILLIVDSNIDKSNDINLIWPKFNSNIKNKITIIRNKIDLSKEIPEIKIFKKNNIIS 354

Query: 344 -SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDC 400
            S++TGEG++ LI  +K  L+         I +  RH+  + +    +  A   LN+ + 
Sbjct: 355 LSAYTGEGVDILIKYLKD-LNCLLLNEEGCILARTRHILEIKKAKNNILNAKKLLNKYNL 413

Query: 401 GLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
             D ++E LR+A   L KI G   +    L+ IFS FCIGK
Sbjct: 414 S-DFVSEELRIAQSCLEKILGINNNSNDFLNEIFSNFCIGK 453


>gi|299541770|ref|ZP_07052093.1| tRNA modification GTPase trmE [Lysinibacillus fusiformis ZC1]
 gi|298725508|gb|EFI66149.1| tRNA modification GTPase trmE [Lysinibacillus fusiformis ZC1]
          Length = 461

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 156/461 (33%), Positives = 255/461 (55%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFG--LDGR 59
           E +TI A+ST     AI+I+RLSG     + + I K    K    K S    +G  +D +
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDEAVTIADKIFKSPGGKSLTTKDSHTIHYGHLVDPK 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ++++ +L +   P++FT ED  E + HGG+  V  +L+ LA     RLA PGEF++R
Sbjct: 62  TNEVVEEVMLSLMRGPKTFTREDVVEINCHGGLVSVKRVLQ-LALTSGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G+LS L G     L    + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLIGDLRQALLETLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +   ++    ++KN+I   +     G+I+R G   VILG  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTVPVLIEKCTWVKNEIIKLLQTSSQGKILREGLSTVILGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSREAL 300

Query: 297 ENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYS----TYTEEY--DHLI- 343
             ADLIL +     E+ ++ E  F   + +D+I I  K+DL         +E   +H I 
Sbjct: 301 RGADLILFVLNYADELTAEDERLFETIEAMDYIVIVNKTDLPQKIDLARVKELAGEHRIV 360

Query: 344 --SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD- 399
             S    EG+ EL   I ++    + +    +  S+ RH+  L Q    +E A    +D 
Sbjct: 361 TTSLLQEEGITELEEAIAALFFEGQIEAGDLTYVSNARHIALLHQAQATVEDAIAAAQDG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  ++      LG+I G    E L++ +FS+FC+GK
Sbjct: 421 VPVDMVQIDVTRTWEILGEIIGDTVQESLINQLFSQFCLGK 461


>gi|255657633|ref|ZP_05403042.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-23m63]
          Length = 459

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 165/457 (36%), Positives = 253/457 (55%), Gaps = 24/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-I 60
           +TI A++T      I I+R+SG    +V E I K    K      K +L Y   +D   I
Sbjct: 5   DTIAAIATAPGEGGIGILRISGERALKVAEEIFKSMSGKSIEEYNKRTLIYGNIVDKENI 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL     P S+TGED  E + HGG   V  ILE L    ++RLA  GEF++RAF N
Sbjct: 65  IDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILE-LILSKDVRLAEAGEFTKRAFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I ++T++   ++   + G LS    +  DK+T I + +E  +D+ E
Sbjct: 124 GRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHVEVAIDYPE 183

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+++ + + + +    LK +I       + G+I+R G K VI+G  N GKSSL N++ 
Sbjct: 184 E-DIEHITYQTLKDKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNSIL 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDIPGTTRDV+   ++++G  +KI DTAGIR+TDDIVEK G++R+     +AD
Sbjct: 243 GENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVERSKESFTSAD 302

Query: 301 LILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYSTYTEE----YDH-----LISS 345
           LI+++ + +   S+++I      K+   I +  K+DL     EE    Y        IS+
Sbjct: 303 LIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIEEEKILKYVENNSIIKISA 362

Query: 346 FTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
              EG+EEL +KI+S++     K     + ++ RH   LS+  +    A +  E+    D
Sbjct: 363 LQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAYKSATDALIALEQSMPFD 422

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  +L+     LG I G    E LLD IF  FCIGK
Sbjct: 423 FVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 459


>gi|238028966|ref|YP_002913197.1| tRNA modification GTPase TrmE [Burkholderia glumae BGR1]
 gi|237878160|gb|ACR30493.1| TRNA modification GTPase TrmE [Burkholderia glumae BGR1]
          Length = 472

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 155/475 (32%), Positives = 243/475 (51%), Gaps = 39/475 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQ-VCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T      I ++R+S    G S  + + + +C +     R AS   F  
Sbjct: 2   LTTDSDPIVAIATAPGRGGIGVVRISFGRAGASAAEALMQAVCGQLLA-ARHASYVPFLD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+   +  +   +RLA PGE
Sbjct: 61  GAGEALDRGIALNFPAPNSYTGEHVLELQGHGGPIVLQLLLQRCLDAGRGHGVRLAEPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDVHALVDDVIGLRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF EEE +    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPEEE-IDFLEAADARGKLARIRERLARVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIVDTAGLRETEDEVEKIGIART 299

Query: 293 FLEVENADLILLLKEIN-----SKKEIS--FPKNIDFIFIGTKSDLYSTYTEEYDHL--- 342
           + E+E AD++L L +         + I+  FP  +  + +  K+DL +       HL   
Sbjct: 300 WGEIERADVVLHLLDAREGLGADDRAIAGRFPAGVPVVRVFNKTDL-TDAPPAVAHLGGH 358

Query: 343 ---------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL--SQ 385
                          +S+  G+G++ L  ++  I   +       + + +RHL  L  +Q
Sbjct: 359 AQADAAGGLDLSEVRLSAKRGDGIDLLRAELLRIAGWQAGAESVYL-ARERHLIALRAAQ 417

Query: 386 TVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                     ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 418 AHLAQAAGHADQNAEALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 472


>gi|260685218|ref|YP_003216503.1| tRNA modification GTPase TrmE [Clostridium difficile CD196]
 gi|260688877|ref|YP_003220011.1| tRNA modification GTPase TrmE [Clostridium difficile R20291]
 gi|260211381|emb|CBA67036.1| putative tRNA modification GTPase [Clostridium difficile CD196]
 gi|260214894|emb|CBE07700.1| putative tRNA modification GTPase [Clostridium difficile R20291]
          Length = 462

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 165/457 (36%), Positives = 252/457 (55%), Gaps = 24/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-I 60
           +TI A++T      I I+R+SG    +V E I K    K      K +L Y   LD   I
Sbjct: 8   DTIAAIATAPGEGGIGILRISGERALKVAEEIFKSMSGKSIEEYNKRTLIYGNILDNENI 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL     P S+TGED  E + HGG   V  ILE L    ++RLA  GEF++RAF N
Sbjct: 68  IDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILE-LILSKDVRLAEAGEFTKRAFLN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I ++T++   ++   + G LS    +  DK+T I + +E  +D+ E
Sbjct: 127 GRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHVEVAIDYPE 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+++ + + +      LK +I       + G+I+R G K VI+G  N GKSSL N++ 
Sbjct: 187 E-DIEHITYQTLKEKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNSIL 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDIPGTTRDV+   ++++G  +KI DTAGIR+TDDIVEK G++++     +AD
Sbjct: 246 GENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVEKSKESFTSAD 305

Query: 301 LILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYSTYTEE----YDH-----LISS 345
           LI+++ + +   S+++I      K+   I +  K+DL     EE    Y        IS+
Sbjct: 306 LIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIEEEKILKYVENNSIIKISA 365

Query: 346 FTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
              EG+EEL +KI+S++     K     + ++ RH   LS+  +    A +  E+    D
Sbjct: 366 LQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAYKSATDALIALEQSMPFD 425

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  +L+     LG I G    E LLD IF  FCIGK
Sbjct: 426 FVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 462


>gi|269798908|ref|YP_003312808.1| tRNA modification GTPase TrmE [Veillonella parvula DSM 2008]
 gi|269095537|gb|ACZ25528.1| tRNA modification GTPase TrmE [Veillonella parvula DSM 2008]
          Length = 461

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 256/460 (55%), Gaps = 28/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58
           +TI A++T      + IIR+SG   F +   + K     P    +  +++Y   +D    
Sbjct: 5   DTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSTGTVPLMDCQNRTIQYGTIVDPTTN 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ L+++   P S+T ED  E   HGGI  V  IL+ L    ++R+A  GEF++RAF
Sbjct: 65  KTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLVNH-DVRMAEAGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I ++TE    L++  + G +SS      ++L  + + +E  +D+
Sbjct: 124 MNGRIDLTQAEAIIDIIEAKTEDSLSLAVAQLDGTVSSFVKDVREQLIAMIAHLEVTIDY 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            EE D+++ +S+EV   +  +   +   +S    G +IR+G   VI+G  NAGKSSL NA
Sbjct: 184 PEE-DIEDVTSQEVREQLQPILKAMDELLSTANTGRLIRDGITTVIVGRPNAGKSSLMNA 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDIPGTTRD +   + +EG  +++ DTAGIR+T D VE  G++R    +  
Sbjct: 243 LLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYINK 302

Query: 299 ADLILLLKEINSK---KEISFPKNI---DFIFIGTKSDLYSTYTEE--YDH-------LI 343
           AD++L + + ++    +EI    ++   + I +  KSD+    T+E   +H        I
Sbjct: 303 ADIVLCVIDGSTSLTPEEIEILTSVSGLNTIVLLNKSDVAQVVTDENIKEHGTFTAIERI 362

Query: 344 SSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           S+  GEG   L   ++ ++   + K+   ++ S+ RH+  + Q    +E A L+  D G+
Sbjct: 363 SAKEGEGSAVLAKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEQA-LSSIDMGM 421

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D +A +LR A   LG ITG    E ++D +FS+FC+GK
Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461


>gi|149006299|ref|ZP_01830011.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP18-BS74]
 gi|307127434|ref|YP_003879465.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 670-6B]
 gi|147762076|gb|EDK69038.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP18-BS74]
 gi|306484496|gb|ADM91365.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 670-6B]
 gi|332075631|gb|EGI86099.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17545]
          Length = 457

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 148/460 (32%), Positives = 258/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIVQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ A+L+LL+   +       ++ +   ++ + I +  K+DL  T   E   L      I
Sbjct: 300 LKEANLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S    + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E   
Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|227539827|ref|ZP_03969876.1| tRNA modification GTPase TrmE [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240469|gb|EEI90484.1| tRNA modification GTPase TrmE [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 458

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 157/455 (34%), Positives = 248/455 (54%), Gaps = 20/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGR-I 60
            ++ETI A++T     AI++IRLSG    ++   + + K    + +   +F  + DG  I
Sbjct: 7   QQQETIVALATANGNGAIAVIRLSGKDAIEIANQVFRGKDLSAQPSHTVHFGTIRDGEEI 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L+ +F  P S+T E   E   H    ++  I+  L +    R A PGEF+ RAF N
Sbjct: 67  LDEVLVTLFVGPNSYTKEHVVEISTHNSKYIIERIISLLIR-KGARAAKPGEFTLRAFLN 125

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G +DL +AE++ADLI+S +    +++M+ M G  S+   +  D L H  S IE +LDFSE
Sbjct: 126 GGMDLSQAEAVADLIASNSAASHQIAMQQMRGGFSNQLRKLRDDLIHFASLIELELDFSE 185

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E DV+ F++++ L  ++   N +   + Q  + G +++NG  +VI G  N GKS+L NAL
Sbjct: 186 E-DVE-FANRDQLKLLILQINSVVRKLIQSFEQGNVLKNGVPVVIAGKPNVGKSTLLNAL 243

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DI GTTRD +  ++++ G   +  DTAGIRET D++E +G++RT  +++ A
Sbjct: 244 LNEERAIVSDIAGTTRDTIEDEINIHGVTFRFIDTAGIRETVDVIEAKGVERTREKMKQA 303

Query: 300 DLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYST-----YTEEYDHLISSF 346
            LI+ L         ++ ++ E     NI F+ I  KSDL S      Y       IS+ 
Sbjct: 304 RLIIYLFDPVQDTIADVETQLEEVRSLNIPFVTIINKSDLLSEEQRAGYQSLSPVFISAK 363

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
              G+EEL +++   ++         + ++ RH+  L  T   L       +     D +
Sbjct: 364 EQIGVEELKDELLRQVNLANLNTDDVMVTNIRHVEALQHTEDSLGRVLFGIDNPVTSDFL 423

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A ++R A   LG+ITG V  + LLD IFSKFCIGK
Sbjct: 424 AMDIRQALYHLGEITGSVSTDDLLDNIFSKFCIGK 458


>gi|195978293|ref|YP_002123537.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974998|gb|ACG62524.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 458

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 152/462 (32%), Positives = 256/462 (55%), Gaps = 28/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG     + + I K K      AS    +G     
Sbjct: 3   ITKEFDTIAAISTPLGEGAIGIVRLSGTKALDIAKSIFKGKD-LTTVASHTLNYGHIIKP 61

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G ++D+ ++ V  +P++FT ED  E + HGGIAV N IL+ L K    R+A PGEF++
Sbjct: 62  STGEVIDEVMVSVMLAPKTFTREDVIEINTHGGIAVTNDILQLLIKQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRIDLTQAEAVMDLIRAKTDKAMSIAIKQLDGSLSQLISDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  + +     +  +   +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLRDKTQEFQALLEQLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E D L      I
Sbjct: 301 LQEADLVLLVLNASEKLTEQDKALLALSQDSNRIILLNKTDLDQVI--EKDQLPEEAIPI 358

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK--- 398
           S    + ++ + ++I  +        +   +  S+ RH+  + Q V+ LE  ++NE    
Sbjct: 359 SVLQNQNIDLIEDRINQLFFDHTGLIEQDATYLSNARHISLIEQAVQSLE--AVNEGLAL 416

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L  A   LG+ITG    ++L+  +FS+FC+GK
Sbjct: 417 GMPVDLLQIDLTRAWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|225858807|ref|YP_002740317.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 70585]
 gi|225720545|gb|ACO16399.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 70585]
          Length = 457

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 148/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDD VE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDTVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T   E   L      I
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S    + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E   
Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|313893537|ref|ZP_07827107.1| tRNA modification GTPase TrmE [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441980|gb|EFR60402.1| tRNA modification GTPase TrmE [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 461

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 257/460 (55%), Gaps = 28/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58
           +TI A++T      + IIR+SG   F +   + K     P    +  +++Y   +D    
Sbjct: 5   DTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSAGTVPLMDRQNRTIQYGTIVDPATN 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ L+++   P S+T ED  E   HGGI  V  IL+ L    ++R+A  GEF++RAF
Sbjct: 65  KTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLVNH-DVRMAEAGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I ++TE    L++  + G +SS      ++L  + + +E  +D+
Sbjct: 124 MNGRIDLTQAEAIIDIIEAKTEDSLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTIDY 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            EE D+++ +S+EV + +  +   +   +S    G +IR+G   VI+G  NAGKSSL NA
Sbjct: 184 PEE-DIEDVTSQEVSDQLQPILKAMDELLSTANTGRLIRDGITTVIVGRPNAGKSSLMNA 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDIPGTTRD +   + +EG  +++ DTAGIR+T D VE  G++R    +  
Sbjct: 243 LLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYINK 302

Query: 299 ADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEE--YDH-------LI 343
           AD++L + + +   + +EI    ++   + I +  KSD+    T+E   +H        I
Sbjct: 303 ADIVLCVIDGSTPLTPEEIEILTSVSGLNTIVLLNKSDVAQVVTDENIKEHGTFTAIERI 362

Query: 344 SSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           S+  GEG   L   ++ ++   + K+   ++ S+ RH+  + Q    +E A L+  D G+
Sbjct: 363 SAKEGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEQA-LSSIDMGM 421

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D +A +LR A   LG ITG    E ++D +FS+FC+GK
Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461


>gi|148994246|ref|ZP_01823539.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP9-BS68]
 gi|168488838|ref|ZP_02713037.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP195]
 gi|147927387|gb|EDK78418.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP9-BS68]
 gi|183572349|gb|EDT92877.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP195]
 gi|332073349|gb|EGI83828.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17570]
          Length = 457

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + IE +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQIEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ A+L+LL+   +       ++ +   ++ + I +  K+DL  T   E   L      I
Sbjct: 300 LKEANLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S    + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E   
Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLIEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|332286178|ref|YP_004418089.1| tRNA modification GTPase TrmE [Pusillimonas sp. T7-7]
 gi|330430131|gb|AEC21465.1| tRNA modification GTPase TrmE [Pusillimonas sp. T7-7]
          Length = 488

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 166/493 (33%), Positives = 246/493 (49%), Gaps = 63/493 (12%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPF-PRKASLRYFFGLDGRI 60
           H  + I A++T      I ++R+SG    Q+   I +    P  PR A    F    G+ 
Sbjct: 4   HSHDPIVAIATAPGRGGIGVVRVSG---NQLEPLISRLFTTPIKPRHAHYLPFNDEHGKA 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRA 117
           +D G+++ F  P+S+TGED  E   HGG AV+  +L    +  K   +R A PGEF+ RA
Sbjct: 61  IDAGIVLFFKGPQSYTGEDVLELQGHGGPAVLRRLLARCLDAGKDLGIRHAEPGEFTHRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N ++DL +AE++ADLI + +E   R +M  +SG  S       D++ H+R  +EA LD
Sbjct: 121 FLNERLDLAQAEAVADLIDASSEAAARSAMASLSGAFSDQVNALGDRIVHLRMLVEATLD 180

Query: 178 FSEEED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           F EEE   ++ + ++  L  I   + D+     Q + G I+R G  +V+ G  N GKSSL
Sbjct: 181 FPEEEIDFLEKYQARAALEAI---RKDLQHLTQQARQGMILREGLHVVLAGQPNVGKSSL 237

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  D+AIVT I GTTRD +   + ++G  + I DTAG+RET+D VE  GI RT+ E
Sbjct: 238 LNALAGDDIAIVTPIAGTTRDKVIQQIHIQGVPLHIVDTAGLRETEDTVESIGIARTWAE 297

Query: 296 VENADLILLLK-------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------- 339
           +E A++I+ L+       E+++      P     + +  K DL     + +         
Sbjct: 298 IEKANVIIHLQDARAQNDELDTAITRRLPARTPVLKVFNKIDLLPENEQAHFQPGTVSTL 357

Query: 340 ------------------------DHL-----ISSFTGEGLEELINKIKSILS-NKFKKL 369
                                   DH      IS+ TG GL+ L  ++ +I   N   + 
Sbjct: 358 ATDSTSPGHSTGKASDPSAQKASDDHQELALGISAKTGAGLDTLRQQLLNIAGWNPGSES 417

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQ 427
           P+   + +RHL  L     +L +A    ++ D  LD+ AE LRLA   L  ITG    + 
Sbjct: 418 PWL--ARERHLTALQHASEHLALAHEHASQNDRVLDLFAEELRLAHEELCLITGQFTSDD 475

Query: 428 LLDIIFSKFCIGK 440
           LL  IFS FCIGK
Sbjct: 476 LLGEIFSSFCIGK 488


>gi|319789803|ref|YP_004151436.1| tRNA modification GTPase TrmE [Thermovibrio ammonificans HB-1]
 gi|317114305|gb|ADU96795.1| tRNA modification GTPase TrmE [Thermovibrio ammonificans HB-1]
          Length = 469

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 159/464 (34%), Positives = 256/464 (55%), Gaps = 31/464 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGLD----G 58
           ++TI A+ST     AI I+R+SG     +    F  K  K        + ++GL     G
Sbjct: 9   EDTIAAISTPIGKGAIGIVRISGKDALTILRRLFRTKGGKEKLEFEDRKMYYGLVVDRFG 68

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L +   +P++FTGED  E HVHGGI VV  +L E+      RLA PGEF+ RAF
Sbjct: 69  EPIDEVLAVYMKAPKTFTGEDVVELHVHGGIVVVRKVLREVLAC-GARLAKPGEFTMRAF 127

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            +GKIDL++AE++  LI + +E+  ++++E + G+LS    +   +L  +++ IEA +DF
Sbjct: 128 IHGKIDLVQAEAINQLIEATSELSAKVALEQLEGKLSKRIKELQTRLLELKAVIEAAVDF 187

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            +EE V+   S  +   +  L +++   I   + G  IR G K+ I+G  N GKSSL NA
Sbjct: 188 PDEE-VEIIESHRIKEHLRGLIDELEKLIQTYREGRYIREGIKVAIVGRPNVGKSSLLNA 246

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           + +++ AIVT+IPGTTRDV+   +  +G  V++ DTAGIRE+ D+VE+ GI+++   ++ 
Sbjct: 247 ILQEERAIVTEIPGTTRDVIEETVTFKGLPVRLLDTAGIRESADVVERIGIEKSLKSLKE 306

Query: 299 ADLILL-------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------L 342
           AD++L        L E + K      +  + I +  K+DL    T E            +
Sbjct: 307 ADVVLFVLDGSEGLTEEDLKIASLLNRKDNVIAVINKADLALKLTCEQLKETLGVGRCVI 366

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKD 399
           IS+  G+G++EL + +  +L  + + L      + + +RH   L +    LE A LN  +
Sbjct: 367 ISAKEGKGIDELASAMMELLLLEPESLLGGDEVLITSERHRELLERAKTSLEKA-LNSLN 425

Query: 400 CGL---DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G    + ++ ++  A  +LG+I G V  E + DIIFS+FCIGK
Sbjct: 426 LGYESPEFLSMDIDDALKALGEIVGEVTTEDMFDIIFSRFCIGK 469


>gi|47459397|ref|YP_016259.1| tRNA modification GTPase TrmE [Mycoplasma mobile 163K]
 gi|81828449|sp|Q6KH82|MNME_MYCMO RecName: Full=tRNA modification GTPase mnmE
 gi|47458727|gb|AAT28048.1| thiophene and furan oxidation protein [Mycoplasma mobile 163K]
          Length = 442

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 250/446 (56%), Gaps = 17/446 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++TG    AISIIR+SG   F++ + I   K    +  +       + +I+D+ L
Sbjct: 3   DTIAAIATGNSIQAISIIRISGSDSFKIVKKIFTGKIGKNKTITYGNILNHERKIVDEVL 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +  F    +FTGE+S E   HGGI V N +L+ L      RLA  GEFSRR+F N K+D 
Sbjct: 63  VAWFEGTNNFTGENSVEIFCHGGIVVTNLVLQLLI-ANGARLAERGEFSRRSFLNKKMDF 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ DLI ++T  Q ++S+    G++S     +ID L ++ +  E ++D+ E +DV+
Sbjct: 122 VKAEAINDLIHAKTIRQAQISVNKFDGKISKDIESYIDTLLYLIATCETNIDYPEYDDVE 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           N  ++ +L  I  L   ++  I   +   II NG KI I+G  N GKSSL NAL  ++ A
Sbjct: 182 NLHNETLLPKIKELIQKLNDLIKISEKASIIYNGLKIAIVGKPNVGKSSLLNALLNEERA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+  GTTRDV+     ++G+L  ISDTAG+RE  + +E  GI++TF  +E +D+IL +
Sbjct: 242 IVTNEAGTTRDVIEASFQIDGFLFSISDTAGLREVQNNIENLGIQKTFETIEKSDIILHI 301

Query: 306 KEINSKKEISFPKNID-------FIFIGTKSDLYSTYTEEYDHLIS-SFTGEGLEELINK 357
            + N + E  F K I+       ++ I  K DL   + ++ +H+I  S   + + EL NK
Sbjct: 302 IQPN-EAENDFDKQIEIKSKNKIYLKILNKKDLIKNHNKQ-NHMIKISTLNKDIIELENK 359

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL--DIIAENLRLASV 414
           + S  ++     P  I S +  L  + ++  YL ++   E  + GL  D++  ++  A  
Sbjct: 360 LSSYCNDVEWDNPNLIYS-QNQLSMIKKS--YLALSEAKEGLESGLTPDVVIIDITKAWE 416

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           SL  I G  D E LLD +FS FC+GK
Sbjct: 417 SLVNIKGKADNELLLDKMFSNFCLGK 442


>gi|254977337|ref|ZP_05273809.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-66c26]
 gi|255094668|ref|ZP_05324146.1| tRNA modification GTPase TrmE [Clostridium difficile CIP 107932]
 gi|255316421|ref|ZP_05358004.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-76w55]
 gi|255519081|ref|ZP_05386757.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-97b34]
 gi|255652264|ref|ZP_05399166.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-37x79]
 gi|306521979|ref|ZP_07408326.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-32g58]
          Length = 459

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 165/457 (36%), Positives = 252/457 (55%), Gaps = 24/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-I 60
           +TI A++T      I I+R+SG    +V E I K    K      K +L Y   LD   I
Sbjct: 5   DTIAAIATAPGEGGIGILRISGERALKVAEEIFKSMSGKSIEEYNKRTLIYGNILDNENI 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL     P S+TGED  E + HGG   V  ILE L    ++RLA  GEF++RAF N
Sbjct: 65  IDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILE-LILSKDVRLAEAGEFTKRAFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I ++T++   ++   + G LS    +  DK+T I + +E  +D+ E
Sbjct: 124 GRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHVEVAIDYPE 183

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+++ + + +      LK +I       + G+I+R G K VI+G  N GKSSL N++ 
Sbjct: 184 E-DIEHITYQTLKEKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNSIL 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDIPGTTRDV+   ++++G  +KI DTAGIR+TDDIVEK G++++     +AD
Sbjct: 243 GENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVEKSKESFTSAD 302

Query: 301 LILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYSTYTEE----YDH-----LISS 345
           LI+++ + +   S+++I      K+   I +  K+DL     EE    Y        IS+
Sbjct: 303 LIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIEEEKILKYVENNSIIKISA 362

Query: 346 FTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
              EG+EEL +KI+S++     K     + ++ RH   LS+  +    A +  E+    D
Sbjct: 363 LQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAYKSATDALIALEQSMPFD 422

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  +L+     LG I G    E LLD IF  FCIGK
Sbjct: 423 FVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 459


>gi|307265442|ref|ZP_07546998.1| tRNA modification GTPase TrmE [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919556|gb|EFN49774.1| tRNA modification GTPase TrmE [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 462

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 162/461 (35%), Positives = 249/461 (54%), Gaps = 30/461 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRYFFGLDGR-- 59
           +TI A+ST    + I I+R+SG    ++   I K  KP   K     +L Y   +D    
Sbjct: 6   DTIAAISTFPGEAGIGIVRISGDDALEIISKIFKPYKPKDIKKVKSHTLHYGHIVDPETE 65

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++RAF
Sbjct: 66  EVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I+++T +  + + + +SG +     +  DK+  +   + A +DF
Sbjct: 125 LNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLVHLLALIDF 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E+ DV+    KE+L     +  DI   I   + G +IR G K  I+G  N GKSSL NA
Sbjct: 185 PED-DVEELERKEMLETAKEIVEDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNA 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   +  
Sbjct: 244 LLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAE 303

Query: 299 ADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL------- 342
           ADLIL        L KE     +I   KNI  +F+  K DL     E E  +L       
Sbjct: 304 ADLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIII 361

Query: 343 -ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKD 399
            +S+    GL+EL + I + +           I ++ RH   L    +Y+E +    E++
Sbjct: 362 EVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIERE 421

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D+I  +L  A   +GKITG    E L++ IF +FC+GK
Sbjct: 422 YSEDLITIDLNAALEQIGKITGETATEDLINQIFERFCVGK 462


>gi|256751460|ref|ZP_05492338.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749679|gb|EEU62705.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 462

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 171/464 (36%), Positives = 245/464 (52%), Gaps = 36/464 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGLDG 58
           +TI A+ST    + I I+RLSG       E I K  KP+  K        +L Y + +D 
Sbjct: 6   DTIAAISTFPGEAGIGIVRLSGDDAL---EIISKIFKPYKSKDIKKVKSHTLHYGYIVDP 62

Query: 59  R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++
Sbjct: 63  ETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTK 121

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I ++T +  R + + + G + S   +  DK+  +   + A 
Sbjct: 122 RAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLLVHLLAL 181

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF EE DV+    KE+L     +  DI   I+  + G IIR G K  I+G  N GKSSL
Sbjct: 182 IDFPEE-DVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   
Sbjct: 241 LNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVTKSKEV 300

Query: 296 VENADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL---- 342
           +  ADLIL        L KE     +I   KNI  IF+  K DL     E E   L    
Sbjct: 301 LAEADLILFVLDASRELTKEDYEIFDILTGKNI--IFVLNKIDLPKKIDEKELKDLTKDG 358

Query: 343 ----ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLN 396
               +S+    GLEEL N I + +           I  + RH   L    +Y+E      
Sbjct: 359 IIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALINAKKYMESCVEAI 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E     D+I  +L  A   LGKITG    E L++ IF +FC+GK
Sbjct: 419 EGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 462


>gi|309800286|ref|ZP_07694459.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1302]
 gi|308116070|gb|EFO53573.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1302]
          Length = 457

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 264/460 (57%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS  L Y   +D 
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    L  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTLEFEQLLTNLLKTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY--TEEYDHL--ISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL      +E  D +  IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPEAIETSELPDAVIRISV 359

Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  ++NE  + G+
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|257875886|ref|ZP_05655539.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC20]
 gi|257810052|gb|EEV38872.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC20]
          Length = 481

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 152/463 (32%), Positives = 249/463 (53%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG     + + I +   K   +  S    +G    
Sbjct: 20  ITQEFDTIAAISTPPGEGAISIVRLSGEKAIAIADRIFQAGTKTLAQVPSHTIHYGHIVD 79

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             + R++D+ +L V   P +FT ED  E + HGGI VVN +L+ L      RLA PGEF+
Sbjct: 80  PEENRLMDEVMLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFT 138

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS L      ++    + +E 
Sbjct: 139 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEV 198

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  +++ +L     +K  I + ++  + G+I+R G    I+G  N GKSS
Sbjct: 199 NIDYPEYDDVEELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSS 258

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VEK G++R+  
Sbjct: 259 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVEKIGVERSRK 318

Query: 295 EVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL--------YSTY-TEEY 339
            +  A+LILL+   +       K+ +        I +  K+DL         + Y  +E 
Sbjct: 319 ALAEAELILLVLNQSEGLTQEDKQLLELTAGSRRIILLNKTDLEPKLAPAELAQYAADEP 378

Query: 340 DHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397
              +S  T EGL++L   I  +    K      S  S+ RH+  L   V+ L E+    E
Sbjct: 379 IFSVSVLTSEGLDQLEQAIADLFFGGKTTDKDASYLSNTRHIALLENAVQSLSEVIQGIE 438

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 439 AGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 481


>gi|325567648|ref|ZP_08144315.1| tRNA modification GTPase TrmE [Enterococcus casseliflavus ATCC
           12755]
 gi|325159081|gb|EGC71227.1| tRNA modification GTPase TrmE [Enterococcus casseliflavus ATCC
           12755]
          Length = 481

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 152/463 (32%), Positives = 249/463 (53%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG     + + I +   K   +  S    +G    
Sbjct: 20  ITQEFDTIAAISTPPGEGAISIVRLSGEEAIAIADRIFQAGTKTLAQVPSHTIHYGHIVD 79

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             + R++D+ +L V   P +FT ED  E + HGGI VVN +L+ L      RLA PGEF+
Sbjct: 80  PEENRLMDEVMLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFT 138

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS L      ++    + +E 
Sbjct: 139 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEV 198

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  +++ +L     +K  I + ++  + G+I+R G    I+G  N GKSS
Sbjct: 199 NIDYPEYDDVEELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSS 258

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VEK G++R+  
Sbjct: 259 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVEKIGVERSRK 318

Query: 295 EVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL--------YSTY-TEEY 339
            +  A+LILL+   +       K+ +        I +  K+DL         + Y  +E 
Sbjct: 319 ALAEAELILLVLNQSEGLTQEDKQLLELTAGSRRIILLNKTDLEPKLAPAELAQYAADEP 378

Query: 340 DHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397
              +S  T EGL++L   I  +    K      S  S+ RH+  L   V+ L E+    E
Sbjct: 379 IFSVSVLTNEGLDQLEQAIADLFFGGKTTDKDASYLSNTRHIALLENAVQSLSEVIQGIE 438

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 439 AGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 481


>gi|306825270|ref|ZP_07458612.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432706|gb|EFM35680.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 457

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 263/460 (57%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS  L Y   +D 
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIIDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTAQRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIR+TDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGVERSRKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY-TEEYDH---LISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T  T E       IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSELPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  ++NE  + G+
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|309390345|gb|ADO78225.1| tRNA modification GTPase trmE [Halanaerobium praevalens DSM 2228]
          Length = 464

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 161/462 (34%), Positives = 252/462 (54%), Gaps = 27/462 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI--- 60
           +++TI A++T         IR+SGP  +Q+ + I K  K   +    + +    G I   
Sbjct: 5   KEDTIAAIATPFGTGGTGKIRISGPQAYQIGDKIFKSVKKEKKLKEQKTYTAHYGEIRDP 64

Query: 61  -----LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
                +D+ + I+   P SFTGE+  EF  HGG+  +  +LE + K    R+A PGEFS+
Sbjct: 65  KTDKTIDEVVAIMMKKPHSFTGENVLEFDCHGGMTPLRAVLELVLKQ-GARMAEPGEFSQ 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ ++I+S+TE    L+++ ++G+LS+   +  D+   I + +EA 
Sbjct: 124 RAFLNGRIDLAQAEAIIEVINSKTEKSLDLAIDQLNGKLSNKVEKIKDQAVEILAHLEAA 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E+E ++ F  +++ +   +LK +    +   K G+I + G K VI+G  N GKSSL
Sbjct: 184 IDYPEDE-IEGFRPEKLGDKFNYLKQETDKLLKSSKQGKIYKEGLKTVIVGKPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N   ++  AIVTDIPGTTRDV+   ++L+G  +KI DTAGIRET D VEK G+++T   
Sbjct: 243 LNYFLEEKRAIVTDIPGTTRDVIEEYINLKGIPLKIIDTAGIRETKDAVEKIGVEKTRKL 302

Query: 296 VENADLILLLKEINS-----KKEI-SFPKNIDFIFIGTKSDLYSTYT-----EEYDH--- 341
            E ADL+L + +IN       +EI    KN   I I  K+DL +  T     EE+     
Sbjct: 303 AEKADLVLFMLDINQGITAEDREIYQLIKNKPVIIIVNKTDLEAKITKEKIKEEFPEPSL 362

Query: 342 -LISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEK 398
             IS    EGL +L + I   IL  + +    ++ +  RH   L +    +E   + +E 
Sbjct: 363 LWISILKEEGLIQLKDNILAEILDEEIEADTEAVITQSRHRDALVKAQSAIERVIVSHET 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D +  +L+     LGKITG    + +LD IF  FC+GK
Sbjct: 423 KMPYDFLTIDLKDFLNGLGKITGETVADDILDRIFKDFCLGK 464


>gi|86606766|ref|YP_475529.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-3-3Ab]
 gi|123505609|sp|Q2JSU8|MNME_SYNJA RecName: Full=tRNA modification GTPase mnmE
 gi|86555308|gb|ABD00266.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-3-3Ab]
          Length = 459

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 237/443 (53%), Gaps = 28/443 (6%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRILDKGLLIVFPSPES 74
           +I I+RLSG     + + I    +      S R  +G      GR LD+ L +   +P S
Sbjct: 24  SIGIVRLSGSRALAIAQAIFTPARRNAVWESHRLLYGWIHDEKGRRLDEALAVWMQAPRS 83

Query: 75  FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134
           +T ED  E H HGGI VV   L++  +    RLA PGEFS RAF NG+IDL +AES+ADL
Sbjct: 84  YTREDVVELHCHGGIMVVQATLQQCLRQ-GARLAQPGEFSLRAFLNGRIDLTQAESVADL 142

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE---DVQNFSSKE 191
           +++ +    ++++ G+ G+L         +L  + + IEA LDF E+    DV  + ++ 
Sbjct: 143 VAARSPQAAQMALAGLQGKLGQSIRALRQELLGLLAEIEARLDFEEDLPPLDVPAWQAR- 201

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            L DI   +  + + ++  + G+++R G K+ I+G  N GKSSL NA + +D AIVTD+P
Sbjct: 202 -LQDI---QAQMQALLATAERGQLLRTGVKVAIVGRPNVGKSSLLNAWSGQDRAIVTDLP 257

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL------ 305
           GTTRDV+   L + G  V++ DTAGIR TDD VE+ G++R+    + AD+++L+      
Sbjct: 258 GTTRDVVESQLVVRGIPVQLLDTAGIRATDDPVERLGVERSQRLAQTADVLVLVIDAQAG 317

Query: 306 -KEINSKKEISFPKNIDFIFIGTKSDLYST----YTEEYDHLISSFT--GEGLEELINKI 358
             E ++    S  ++   I +  K+DL          E  + + +    G+G+ EL   +
Sbjct: 318 WTEADAAIYASI-RHRPLILVINKTDLAPADKIRLPPEIAYRVPAVAAQGQGIPELEEAL 376

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLG 417
           + +++    +    +  ++R    L Q    LE +    +    LD    +LR A  +LG
Sbjct: 377 EQLVTQGRPQPNLEVSLNQRQAAALRQAQASLEQVVQAMQAQLPLDFWTIDLRGALHALG 436

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           +ITG    E +LD IFS+FCIGK
Sbjct: 437 QITGEEISEAVLDQIFSRFCIGK 459


>gi|289167974|ref|YP_003446243.1| tRNA modification GTPase TrmE [Streptococcus mitis B6]
 gi|288907541|emb|CBJ22378.1| tRNA modification GTPase TrmE [Streptococcus mitis B6]
          Length = 457

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 262/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS  L Y   +D 
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTESFSIAQKIFKGKD-LSQVASHTLNYGHIVDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345
           ++ ADL+LL+        +  ++ +   +  + I +  K+DL  +  T E       IS 
Sbjct: 300 LKEADLVLLVLNASESLTVQDRQLLEISQETNRIILLNKTDLPEAIETSELPEDLIRISV 359

Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  ++NE  + G+
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|308071639|ref|YP_003873244.1| tRNA modification GTPase trmE [Paenibacillus polymyxa E681]
 gi|305860918|gb|ADM72706.1| Probable tRNA modification GTPase trmE [Paenibacillus polymyxa
           E681]
          Length = 458

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 151/461 (32%), Positives = 248/461 (53%), Gaps = 32/461 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRILDK 63
           +TI A++T      I+++R+SGP      E + + K P  +  +    +G  +D +  +K
Sbjct: 4   DTIAAIATAVGEGGIAVVRISGPEAVTEVEALFRSKTPLSKAPTHTVHYGHIIDPQSQEK 63

Query: 64  G---LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
               L+ V  +P SFT ED  E   HGG+  V  +++ L  + N+RLA PGEF++RAF N
Sbjct: 64  VEEVLVTVMRAPRSFTTEDVVEISTHGGVVAVKRVMD-LLLLQNIRLAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR----SFIEADL 176
           G+IDL +AE + DLI S+++    ++++ + G+LS    Q I +L H+     + IE ++
Sbjct: 123 GRIDLSQAEGVIDLIRSKSDKAFSVALKQVDGQLS----QNIRRLRHVLVETLAHIEVNI 178

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  DV++F+S  + +    +  +I   +   + G+I+R G    I+G  N GKSSL 
Sbjct: 179 DYPEH-DVESFTSDLIKDKSSQVMTEIDRLLHTAEQGKILREGLTTAIVGRPNVGKSSLL 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N LA+ + AIVTDIPGTTRDV+   + +    +K+ DTAGIRET D+VE+ G++R+   V
Sbjct: 238 NTLAQGERAIVTDIPGTTRDVIEEYVTINSIPLKLLDTAGIRETMDVVERIGVERSRTAV 297

Query: 297 ENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
             ADL+L               L+++I  ++ I     +D      +  L     EE   
Sbjct: 298 SEADLLLIVINANEPLHEDEMALMEQIRGRQAIVIMNKMDLPAQVDRDLLLRYVPEELIV 357

Query: 342 LISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKD 399
            +S    EG + L   I ++  S K +    +  S+ RH+  L +  + L +     ++ 
Sbjct: 358 PMSVKENEGADRLEQAISNLFFSGKLESADMTYVSNVRHIALLKKARQSLVDAYEAADQF 417

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D+I  ++RLA   LG+I G    + L+D IFS+FC+GK
Sbjct: 418 VPIDMIQIDVRLAWEHLGEIVGDTAHDALIDQIFSQFCLGK 458


>gi|294792403|ref|ZP_06757550.1| tRNA modification GTPase TrmE [Veillonella sp. 6_1_27]
 gi|294456302|gb|EFG24665.1| tRNA modification GTPase TrmE [Veillonella sp. 6_1_27]
          Length = 461

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 151/459 (32%), Positives = 256/459 (55%), Gaps = 26/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58
           +TI A++T      + IIR+SG   F +   + K     P    +  +++Y   +D    
Sbjct: 5   DTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSVGTVPLMDRQNRTIQYGTIVDPMTN 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ L+++   P S+T ED  E   HGGI  V  IL+ L    ++R+A  GEF++RAF
Sbjct: 65  KTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLVNH-DVRMAEAGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I ++TE    L++  + G +SS      ++L  + + +E  +D+
Sbjct: 124 MNGRIDLTQAEAIIDIIEAKTEDSLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTIDY 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            EE D+++ +S+EV + +  +   +   +S    G +IR+G   VI+G  NAGKSSL NA
Sbjct: 184 PEE-DIEDVTSQEVRDQLQPILKAMDDLLSTANTGRLIRDGITTVIVGRPNAGKSSLMNA 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDIPGTTRD +   + +EG  +++ DTAGIR+T D VE  G++R    +  
Sbjct: 243 LLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYINK 302

Query: 299 ADLILLLKEINS---KKEISFPKNI---DFIFIGTKSDLYSTYTEE--YDH-------LI 343
           AD++L + + ++    +EI    ++   + I +  KSD+    T+E   +H        I
Sbjct: 303 ADIVLCVIDGSTPLNPEEIEILTSVSGLNTIVLLNKSDVAQVVTDENIKEHGTFTAIERI 362

Query: 344 SSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S+  GEG   L   ++ ++   + K+   ++ S+ RH+  + Q    +E A S  + D  
Sbjct: 363 SAKEGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEQALSSIDMDMP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D +A +LR A   LG ITG    E ++D +FS+FC+GK
Sbjct: 423 VDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461


>gi|83309100|ref|YP_419364.1| GTPase [Magnetospirillum magneticum AMB-1]
 gi|82943941|dbj|BAE48805.1| Predicted GTPase [Magnetospirillum magneticum AMB-1]
          Length = 365

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 222/369 (60%), Gaps = 14/369 (3%)

Query: 81  AEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETE 140
           AE H+HGG AV   +   L ++  LR A PGEFSRRAF NGK+DL  AE++ADL+ +ET 
Sbjct: 2   AELHLHGGRAVAAALTARLGEL-GLRPAEPGEFSRRAFLNGKLDLTRAEAIADLVDAETA 60

Query: 141 MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
            QRR ++  + G L+ L   W   L    + +EA +DF++E D+ +   ++ + ++  L+
Sbjct: 61  AQRRQALRQLDGGLAGLVEGWRSALVRAMAHLEAVIDFADE-DIPDTLLEQSVGEVRSLR 119

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            ++  H+ + + GE +R+G  I ILG  NAGKSSL N LA ++ AIV+   GTTRDV+ +
Sbjct: 120 REMEVHLDERRNGERLRDGIHITILGAPNAGKSSLLNRLAGREAAIVSAQAGTTRDVIEV 179

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL--KEINSKKEISFPK 318
            LDL G+ V ++DTAG+R++   +E EG++R       ADL L +    +    + +  +
Sbjct: 180 HLDLGGWPVIVADTAGLRDSACEIESEGVRRAADRAAKADLRLCVFDGTLYPNLDAATLE 239

Query: 319 NID--FIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEELINKIKSILSNKFKKLPF 371
            ID   + +  K DL +  T    +      +S+  GEG+++L+ ++  ++ ++F     
Sbjct: 240 MIDDATLVVLNKRDLMTGETPASINGRPVLTLSAKAGEGVDDLVAELARVVESRFAMGSA 299

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
            + + +RH   +++ V  L   S  +   G+++ AE+LRLA+ SLG+ITG VDVE++LD+
Sbjct: 300 PVLTRERHRVAVAEAVAAL---SRFDPGLGIEMAAEDLRLAARSLGRITGRVDVEEILDV 356

Query: 432 IFSKFCIGK 440
           IF +FCIGK
Sbjct: 357 IFHEFCIGK 365


>gi|282895353|ref|ZP_06303554.1| tRNA modification GTPase TrmE [Raphidiopsis brookii D9]
 gi|281199604|gb|EFA74465.1| tRNA modification GTPase TrmE [Raphidiopsis brookii D9]
          Length = 460

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 152/462 (32%), Positives = 245/462 (53%), Gaps = 39/462 (8%)

Query: 7   TIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----D 57
           TI A++T  +P   ++ I+R+SG     +    F    K+ +    S R  +G       
Sbjct: 10  TIAAIATAVVPQQGSVGIVRVSGDQAMAIAHTLFYTPGKQIW---ESHRILYGFVRQPET 66

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ LL++  +P SFT ED  EFH HGGI  V  +L+ L      RLA PGEFS RA
Sbjct: 67  KQVVDEALLLIMKAPRSFTREDVVEFHCHGGIIPVQQVLQ-LCLENGARLAQPGEFSLRA 125

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AES+ADL+ +++    + ++ G+ G+L+       ++   I + IEA +D
Sbjct: 126 FLNGRLDLTQAESIADLVGAKSPQAAQTALAGLRGKLAQPIRYLRNQCLDILAEIEARID 185

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F  EED+      +++  I  +  ++S  +S  + GE++R+G K+ I+G  N GKSSL N
Sbjct: 186 F--EEDLPPLDQGKIITQINQISVEVSRLLSTKEKGELLRSGLKVAIVGRPNVGKSSLLN 243

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           A ++ D AIVTD+PGTTRD++   L + G  +++ DTAGIRET D VEK G++R+     
Sbjct: 244 AWSQCDRAIVTDLPGTTRDIVESQLVVGGIPIQVLDTAGIRETVDQVEKIGVERSRQAAN 303

Query: 298 NADLILL---------------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
           +ADL+LL                +++  +  I     ID +      DL    +   +  
Sbjct: 304 SADLVLLTIDAKAGWQSGDEEIYQQVKHRPLILVINKIDLV-----EDLGGICSPTMEKA 358

Query: 343 ISSFTGE--GLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEK 398
           + +  G+  G+E+L   I  ++ + K       +  ++R    L +  +  +++      
Sbjct: 359 VKTAAGQNRGIEDLEQAILEVVQTQKIVAGDLDLAINQRQAAALIKAQIDLVQVQKTIVD 418

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LD    +LR A  +LG+ITG    E LLD IFS+FCIGK
Sbjct: 419 QLPLDFWTIDLRGAIYALGEITGEEVTESLLDRIFSRFCIGK 460


>gi|257061940|ref|YP_003139828.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8802]
 gi|256592106|gb|ACV02993.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8802]
          Length = 460

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 245/460 (53%), Gaps = 33/460 (7%)

Query: 6   ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56
           ETI A++T  +P   +I I+RLSG     +    F    ++ +    S R  +G      
Sbjct: 9   ETIAAIATAIVPQQGSIGIVRLSGNQAVTIARQLFTAPGQQKW---ESHRILYGYIRHPQ 65

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      +LA PGEF+ R
Sbjct: 66  TQQVIDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQ-LCVEQGAKLAQPGEFTLR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AES+A L+ + +    ++++ G+ G+L+    Q  D+   I + +EA +
Sbjct: 125 AFLNGRIDLTQAESVAQLVGARSPQASQMALAGLQGKLAQPIRQLRDRCLDILAEVEARI 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF  EED+       ++  +  +   + + ++    GE++R G K+ I+G  N GKSSL 
Sbjct: 185 DF--EEDLPPLDENSIIEGLQDILTHVQALLATADRGELLRTGLKVAIVGRPNVGKSSLL 242

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NA +  D AIVTD+PGTTRDV+   L + G  +++ DTAGIRET D VEK G++R+    
Sbjct: 243 NAWSCSDRAIVTDLPGTTRDVVESQLIVGGIPIQVLDTAGIRETADRVEKLGVERSRHVA 302

Query: 297 ENADLILLLKEIN----SKKEISFP--KNIDFIFIGTKSDL----YSTYTEEYDHLISSF 346
             ADL+LL  +      ++ E  +   ++   I +  K DL      ++  +   ++ + 
Sbjct: 303 SQADLVLLTIDAQMGWTTEDEAIYQQVQHRPLILVINKIDLGLADSLSFIPQIKQIVKTV 362

Query: 347 TG--EGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNEKDC 400
               +G+E+L   I  S+ S   +     +  ++R    L++    LE      +N+   
Sbjct: 363 AAQNQGIEQLEKAILASVESQNIQAANLDLAINQRQAAVLTRAKIALEQVQETIVNQ--L 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 421 PLDFWTIDLRAAIQALGEITGEEITESVLDRIFSRFCIGK 460


>gi|149019612|ref|ZP_01834931.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP23-BS72]
 gi|147930987|gb|EDK81967.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP23-BS72]
 gi|301794153|emb|CBW36563.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae INV104]
 gi|332202879|gb|EGJ16947.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47901]
          Length = 457

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 148/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ A+L+LL+   +       ++ +   ++ + I +  K+DL  T   E   L      I
Sbjct: 300 LKEANLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S    + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  +   E   
Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLIEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|116198089|ref|XP_001224856.1| hypothetical protein CHGG_07200 [Chaetomium globosum CBS 148.51]
 gi|88178479|gb|EAQ85947.1| hypothetical protein CHGG_07200 [Chaetomium globosum CBS 148.51]
          Length = 496

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 170/491 (34%), Positives = 248/491 (50%), Gaps = 95/491 (19%)

Query: 32  QVCEFICKKKKPF-PRKASLRYFF--GL----DGRILDK-GLLIVFPSPESFTGEDSAEF 83
           +V   +C  K P  PR A +R  F  GL       I+D   L++ FP P++ TGED  E 
Sbjct: 14  RVYHGLCPNKAPPKPRFAGVRTLFEPGLADLSGANIVDSDALVLYFPGPKTVTGEDVLEL 73

Query: 84  HVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETE 140
           HVHGG A V  +L  + + P+   +R A PGEF+RR+F NG++DL + ESL D +++ETE
Sbjct: 74  HVHGGPATVKAVLSAVRRCPSSTEIRYAGPGEFTRRSFLNGRLDLAQIESLGDTLAAETE 133

Query: 141 MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF--SSKEVLNDILF 198
            QRR ++ G SG L   Y  W D+L   R  IEA +DFSE+   Q+F  S  E+L ++  
Sbjct: 134 HQRRAAVRGNSGTLGKTYDSWRDQLLLGRGEIEALIDFSED---QHFDESPAELLTNVTR 190

Query: 199 LKNDISSHISQGKLG----EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           L  DI   I   KLG    E++RNG +I +LG  NAGKSSL N +  ++ +IV+   GTT
Sbjct: 191 LTEDILHSIGLHKLGSQRSELLRNGIRIALLGPPNAGKSSLMNQIVGREASIVSAEAGTT 250

Query: 255 RDVLTIDLDLEGYLVKISDTAGIR---------------ETDDIVEKEGIKRTFLEVENA 299
           RD++   LD+ GYL   +DTAGIR                T   +E+EGI+R   +  ++
Sbjct: 251 RDIVEASLDIRGYLCSFADTAGIRTKTSESLGHHDGTAASTIGAIEQEGIRRARQKALDS 310

Query: 300 DLILLLKEINS-----------------------------KKEISFPKNIDFIFIGTKSD 330
           D+I++L  + +                             K +I  P++++ +      D
Sbjct: 311 DVIIVLASVEATESGNHRISYDLETLQLAAGAQQCLVAVNKTDIVSPESLELLI----QD 366

Query: 331 LYSTYTEEYDHL-------ISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLY 381
             S+   + D L       IS     GL +   I+++  IL+  F  L  S+P   +HL 
Sbjct: 367 FKSSVLADIDGLSGQEPLTISCKAAAGLTDAGGIHELTEILAQSFASL-TSLPDDMQHLL 425

Query: 382 H--------LSQTVRYLE--MASLNEKDC--GLDII--AENLRLASVSLGKITG---CVD 424
                    LS+  R+L   MA   + D     DI+  AE+LRLA + L  ITG     D
Sbjct: 426 GVTERQSQLLSECERHLGDFMAEAKKSDSYDEPDIVLAAEHLRLAGLRLASITGRGESGD 485

Query: 425 VEQLLDIIFSK 435
           VE++L +IF K
Sbjct: 486 VEEVLGVIFEK 496


>gi|310644871|ref|YP_003949630.1| tRNA modification gtpase mnme [Paenibacillus polymyxa SC2]
 gi|309249822|gb|ADO59389.1| tRNA modification GTPase mnmE [Paenibacillus polymyxa SC2]
          Length = 458

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 151/461 (32%), Positives = 249/461 (54%), Gaps = 32/461 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRILDK 63
           +TI A++T      I+++R+SGP      E + + K P  +  +    +G  +D +  +K
Sbjct: 4   DTIAAIATAVGEGGIAVVRVSGPEAVTEVEALFRSKTPLSKVPTHTVHYGHIIDPQSQEK 63

Query: 64  G---LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
               L+ V  +P SFT ED  E   HGG+  V  +++ L  + N+RLA PGEF++RAF N
Sbjct: 64  VEEVLVTVMRAPRSFTTEDVVEISTHGGVVAVKRVMD-LLLLQNIRLAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR----SFIEADL 176
           G+IDL +AE + DLI S+++    ++++ + G+LS    Q I +L H+     + IE ++
Sbjct: 123 GRIDLSQAEGVIDLIRSKSDKAFSMALKQVDGQLS----QNIRRLRHVLVETLAHIEVNI 178

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  DV++F+S+ + +    +  +I   +   + G+I+R G    I+G  N GKSSL 
Sbjct: 179 DYPEH-DVESFTSELIKDKSSQVMAEIDRLLHTAEQGKILREGLTTAIVGRPNVGKSSLL 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N LA+ + AIVTDIPGTTRDV+   + +    +K+ DTAGIRET D+VE+ G++R+   V
Sbjct: 238 NTLAQGERAIVTDIPGTTRDVIEEYVTINNIPLKLLDTAGIRETMDVVERIGVERSRTAV 297

Query: 297 ENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
             ADL+L               L+++I  ++ I     +D      +  L     EE   
Sbjct: 298 SEADLLLIVINANEPLHEDEMALMEQIRGRQAIVIMNKMDLPAQIDRDLLLRYVPEELIV 357

Query: 342 LISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKD 399
            +S    EG + L   I ++  S K +    +  S+ RH+  L +  + L +     ++ 
Sbjct: 358 PMSVKENEGADRLEQAISNLFFSGKLESADMTYVSNVRHIALLKKARQSLVDAYEAADQL 417

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D+I  ++RLA   LG+I G    + L+D IFS+FC+GK
Sbjct: 418 VPIDMIQIDVRLAWEQLGEIVGDTAHDALIDQIFSQFCLGK 458


>gi|307706532|ref|ZP_07643339.1| tRNA modification GTPase TrmE [Streptococcus mitis SK321]
 gi|307617987|gb|EFN97147.1| tRNA modification GTPase TrmE [Streptococcus mitis SK321]
          Length = 457

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/460 (32%), Positives = 261/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTESFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSELINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTIEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345
           ++ ADL+LL+   +       ++ +   +  + I +  K+DL  +  T E       IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQETNRIILLNKTDLPEAIETSELPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  ++NE  + G+
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|152977683|ref|YP_001377200.1| tRNA modification GTPase TrmE [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189036194|sp|A7GVP7|MNME_BACCN RecName: Full=tRNA modification GTPase mnmE
 gi|152026435|gb|ABS24205.1| tRNA modification GTPase TrmE [Bacillus cytotoxicus NVH 391-98]
          Length = 458

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 148/458 (32%), Positives = 256/458 (55%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +    I K K      + ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGEDAIEKVNRIFKGKDLTAVSSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P++FT ED  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPKTFTREDIVEVNCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G+   ++    + +E ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETLAHVEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  + + ++     ++N+I   +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHRILIEKATHVQNEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVEQIGVERSKEMMSQA 300

Query: 300 DLILLL----KEINSKKEISFP--KNIDFIFIGTKSDL--------YSTYTEEYDHLISS 345
           DL+L++    + + ++ E  F   +  DFI I  K+DL         +    E   + +S
Sbjct: 301 DLVLIVVNYSEPLTNEDEELFRAVQGKDFIVIVNKTDLPQKIEMERVTELASEKRVITTS 360

Query: 346 FTGE-GLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
              E G++EL   I  +      +    +  S+ RH+  L+Q  + + +  +  E    +
Sbjct: 361 LIEEKGVDELEKAIADLFFEGTIESADMTYVSNARHIGLLTQARKTIGDAIAAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|313904719|ref|ZP_07838093.1| tRNA modification GTPase TrmE [Eubacterium cellulosolvens 6]
 gi|313470512|gb|EFR65840.1| tRNA modification GTPase TrmE [Eubacterium cellulosolvens 6]
          Length = 460

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 152/457 (33%), Positives = 250/457 (54%), Gaps = 25/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG---LDGRI 60
           +TI A+ST   PS I I+RLSGP   ++ +  ++  K K    +      +G    +G +
Sbjct: 7   DTIVAISTAMAPSGIGIVRLSGPDAIKIADRVYVNPKGKKLSGQNGYTIHYGNVCENGEV 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L ++  +P S+TGED+ EF  HGG+     ILE +      R A PGEFSRRAF N
Sbjct: 67  IDETLAMLMRAPHSYTGEDTVEFDCHGGVLATKRILEAIVH-AGARPAEPGEFSRRAFLN 125

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I+++ +   R +   + G +S        KL H  + IEA LD  E
Sbjct: 126 GRIDLTQAEAVMDIIAAKNDHALRSAQHQLKGSVSGKISDIRQKLLHETAHIEAALDDPE 185

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              +  +  +++   I+  +  +   +     G+ +  G K VI+G  NAGKSSL N L 
Sbjct: 186 HMSLDGYV-EDMRQVIMAQRKALERLLESADSGKFMTEGIKTVIVGKPNAGKSSLLNLLI 244

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRD+L   ++++G  +++ DTAGIR+  D++EK G++R   +V++AD
Sbjct: 245 GEEKAIVTDIAGTTRDILEEQINIKGITLRLLDTAGIRDASDVIEKIGVERAKEQVKDAD 304

Query: 301 LILLLK------EINSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHL-------ISSF 346
           L+L +       + N  + +   K+  F+ I  K+DL +  T EE +         +S+ 
Sbjct: 305 LVLYVVDGSVALDDNDFEIMKLIKDRKFVVILNKNDLSTIVTSEELEQATGTPVISMSAK 364

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403
             EG++EL ++I+ +  +        I  ++ RH   + + +R L +   S+++ D   D
Sbjct: 365 HSEGIDELEDQIEKMFFHGGISFNDEIYITNVRHKTCIEEAIRSLGLVLQSMDD-DMPED 423

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + +L  A  SLG+ITG    E L++ IFS FC+GK
Sbjct: 424 FWSIDLMGACDSLGQITGETTSEDLVNEIFSSFCMGK 460


>gi|145607203|ref|XP_361596.2| hypothetical protein MGG_04070 [Magnaporthe oryzae 70-15]
 gi|145014795|gb|EDJ99363.1| hypothetical protein MGG_04070 [Magnaporthe oryzae 70-15]
          Length = 525

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/321 (38%), Positives = 191/321 (59%), Gaps = 30/321 (9%)

Query: 18  SAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGR-----ILDKGLLIV-FP 70
           + I++IR+SGP C ++   +C  KK P PR A++R  +  + R     +LD G L++ FP
Sbjct: 11  AGIAVIRISGPDCLEIYRRLCPGKKPPKPRYAAVRTLYAPENRPGTPDVLDSGALVLYFP 70

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMP----NLRLANPGEFSRRAFENGKIDLL 126
            P++ TGED  E H HGG A V  +L  + +       +R A+PGEF+RRAF N ++DL 
Sbjct: 71  GPKTVTGEDVLELHTHGGRATVKSVLSAIPQCAPAASRVRYADPGEFTRRAFFNDRLDLA 130

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           + ESL D + +ETE QRR ++ G SG L + Y  W ++L   R+ IEA +DFSE+   Q+
Sbjct: 131 QVESLGDALDAETEQQRRAAVRGSSGRLGASYDNWRERLLLARAEIEALIDFSED---QH 187

Query: 187 F--SSKEVLNDILFLKNDISSHISQGKLG----EIIRNGYKIVILGHSNAGKSSLFNALA 240
           F  S +E+L  ++    DI + I+  ++G    E++R G +I +LG  N GKSSL N + 
Sbjct: 188 FDESPRELLQSVVGQVRDILALIALHEMGSKRSELLRKGIRIALLGPPNVGKSSLMNLIV 247

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDD--------IVEKEGIK 290
            ++ +IV+   GTTRD++   LD+ GYL   +DTAG R  ET D        IVEKEGI+
Sbjct: 248 GREASIVSTEAGTTRDIVEASLDIRGYLCTFADTAGFRSEETTDASSPAEIGIVEKEGIR 307

Query: 291 RTFLEVENADLILLLKEINSK 311
           R   +   +D++++L  +  +
Sbjct: 308 RARSKAIGSDIVVVLASVEKQ 328



 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 3/48 (6%)

Query: 396 NEKDCGLDIIAENLRLASVSLGKITG---CVDVEQLLDIIFSKFCIGK 440
           +E+D  + + AE+LR A+ +L +ITG     D E++L +IF KFC+GK
Sbjct: 478 HEEDIDVVLAAEHLRYAANALAEITGRGGYGDTEEVLGVIFEKFCVGK 525


>gi|289209758|ref|YP_003461824.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. K90mix]
 gi|288945389|gb|ADC73088.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. K90mix]
          Length = 437

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 233/440 (52%), Gaps = 12/440 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL-RYFFGLDGRILDKG 64
           +TI AV+T      I ++RLSGP    +   +  + +  PR+A   R      G  +D G
Sbjct: 5   DTIVAVATPPGVGGIGVVRLSGPQSLVIARRLTGRDRLRPRQAHYGRLTDPASGETIDDG 64

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP+P S+TGED  E   HG   ++  ++     +   R A PGEF+ +AF NG++D
Sbjct: 65  LILYFPAPHSYTGEDVVELQGHGSPVLLEALVAAAVGL-GARRARPGEFTEQAFLNGRLD 123

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI ++T    RL+   + G L++        +  +R  IEA++DF E  D+
Sbjct: 124 LAQAEAVADLIHAQTTQAARLARSSLDGALAAELEPVSRAIRDMRVIIEAEIDFGET-DL 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           ++ ++ ++      L   I + + + +       G ++ ++G  N GKSSL N LA+ +V
Sbjct: 183 ESEAAPDIARRTEVLHTTILALLERLRPARYFAQGLRLALVGAPNVGKSSLMNRLAESEV 242

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTD PGTTRDVL   + + G  V++ DTAG+  +DD VEK G++R       ADLIL 
Sbjct: 243 AIVTDRPGTTRDVLRSPIAIHGIPVELIDTAGLHASDDPVEKIGMQRAREAATGADLILD 302

Query: 305 LKEINSKK---EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
           L+++   +   E+  P  I  + +  K D  +        +IS+ TG G++EL   I   
Sbjct: 303 LRDLTRPEAVPELEAPPEIPRLTVWNKQDCVADSRSTEGIVISARTGAGIDELKQAIVER 362

Query: 362 L-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
           L +++  +  FS+    RHL  L     +L      E     D+IAE LRLA  +L  + 
Sbjct: 363 LGASEGGQQRFSV--RARHLDGLRLAALHL---GRIEASAAPDLIAEELRLAEAALDALL 417

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G  D E LL  IF+ FCIGK
Sbjct: 418 GRQDHEALLGEIFAGFCIGK 437


>gi|302390791|ref|YP_003826612.1| tRNA modification GTPase trmE [Thermosediminibacter oceani DSM
           16646]
 gi|302201419|gb|ADL08989.1| tRNA modification GTPase trmE [Thermosediminibacter oceani DSM
           16646]
          Length = 462

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 154/466 (33%), Positives = 249/466 (53%), Gaps = 30/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK---PFPRKASLRYFFGL- 56
           M+   +TI A+ST     +I I+R+SG   F++   I + KK   P   K    Y   + 
Sbjct: 1   MSMTGDTIAAISTPLGEGSIGIVRISGEDSFRIASEIFRPKKNIDPSEMKPRTMYLGSIV 60

Query: 57  ---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
               G ++D+ LL+ + +P ++T E+  E + HGG  V   ILE +      R+A PGEF
Sbjct: 61  DPGSGEVIDEVLLVKYKAPFTYTRENMVEINCHGGFTVQRRILEVVLGR-GARVAEPGEF 119

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG+IDL +AE++ D+I ++T+    +++  + G LS    +   ++  I + IE
Sbjct: 120 TKRAFLNGRIDLSQAEAVIDIIRAKTDRALNVAVNQLKGGLSERIREVRQRILRIIAHIE 179

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A++DF E+ D+       +  DI  ++ ++   + + + G+I+R G   VILG  N GKS
Sbjct: 180 ANIDFPED-DIPEADPDTIREDIRGIRVELEELLKKAQAGKIMREGLSTVILGRPNVGKS 238

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N+L ++  AIVTDIPGTTRD++   L++ G  VKI DTAGIRET D VEK G++R  
Sbjct: 239 SLLNSLLREKRAIVTDIPGTTRDIIEEYLNINGIPVKIVDTAGIRETCDAVEKIGVERAL 298

Query: 294 LEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
             ++ A+L+LL+ + +       +  +   K+   I +  K+DL    +   D + S+F 
Sbjct: 299 ESLKEAELVLLMLDASDELREEDRAIMELVKDKFVIVVLNKTDLPEKLS--VDEVKSAFP 356

Query: 348 G-----------EGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMA-S 394
           G           +G+EEL   I   ++ +   +    I +  RH   +   V  LE A S
Sbjct: 357 GKPLIRVSALREKGIEELKEAIYRAVTEEIGPVDEGVIVTRARHSQAVKNAVEALERAES 416

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                  ++++A  +R A   LG+ITG    E +++ IF  FCIGK
Sbjct: 417 ALSSGIPMEMVAMEVREAWERLGEITGDTVREDVVNAIFENFCIGK 462


>gi|312876169|ref|ZP_07736156.1| tRNA modification GTPase TrmE [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796984|gb|EFR13326.1| tRNA modification GTPase TrmE [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 455

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 164/459 (35%), Positives = 249/459 (54%), Gaps = 27/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFP-RKASLRYFFGLD 57
           E +TI A+ST      I I+RLSG   F + E + + +K       P R A+L   +  D
Sbjct: 2   EFDTIAAISTPIGTGGIGIVRLSGKDAFDIAEKLIRSRKYKSIKDIPARYAALVDVYDGD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +LI F SP S+TGED  E   HGG+ V+  ILE   K    R A PGEF++RA
Sbjct: 62  -EFVDEAILIKFKSPHSYTGEDIVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+S+T + ++ + + + G LS    +    L ++ + IEA +D
Sbjct: 120 FLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNLVASIEASID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE E V      E+L+ +      I+  +   + G+ I++G   VI+G  N GKSSL N
Sbjct: 180 FSEHE-VDEVPHTEILSTVDAALQKINKLLKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K++ AIVTDIPGTTRDV+   LD+EG  + ++DTAG+R+T+D+VEK G+K+T   +E
Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAGVRKTEDVVEKIGVKKTLESIE 298

Query: 298 NADLILLLKE--------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
            ADL+L + E              I  K+ I     ID     +  D+   + +E   + 
Sbjct: 299 RADLVLFMIESSGILQEDLEIFETIKDKRFIVLVNKIDKEVKVSHEDIKRIFGKE--GIF 356

Query: 344 SSFTGEGLEELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            S   +   EL+ K     +L    +     + ++ RH   L +  ++L  A  N     
Sbjct: 357 ISVEHDKNLELVEKAITNEVLDKDIEAFDSVLITNLRHKELLLKAKKFLLSAKENLDCVP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LDI++ +++ A  SL +ITG    E ++D IFS FCIGK
Sbjct: 417 LDILSIDIKNALESLYQITGKNVTEDMVDRIFSMFCIGK 455


>gi|261410105|ref|YP_003246346.1| tRNA modification GTPase TrmE [Paenibacillus sp. Y412MC10]
 gi|261286568|gb|ACX68539.1| tRNA modification GTPase TrmE [Paenibacillus sp. Y412MC10]
          Length = 458

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 252/463 (54%), Gaps = 36/463 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI A+ST      I+IIR+SGP   +  E I K K    ++ S    +G  +D   G  
Sbjct: 4   DTIAAISTAVGEGGIAIIRVSGPDSVREVERIFKSKNKLTQEESHTVHYGHIVDPKTGEN 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           L++ L+ V  +P SFT ED  E   HGG+  V  +++ L ++ N+RLA PGEF++RAF N
Sbjct: 64  LEEVLVTVMRAPRSFTTEDVVEISAHGGVISVKRVMDLLLQL-NIRLAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI S+++    ++++ + G LS    +    L    + IE ++D+ E
Sbjct: 123 GRIDLSQAEAVMDLIRSKSDRAFSVALKQVEGTLSRKINELRHTLVETLAHIEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             DV++ +S+ +      +  +I   +   + G+I+R G    I+G  N GKSSL N LA
Sbjct: 183 H-DVESLTSEFIKEKSKLVMGEIDKLLKTAQEGKILREGITTAIVGRPNVGKSSLLNTLA 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVTDIPGTTRDV+   + +    +K+ DTAGIRET D+VE+ G++R+   V  AD
Sbjct: 242 QDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRETMDVVEQIGVERSKHAVNEAD 301

Query: 301 LIL---------------LLKEINSKK------EISFPKNIDFIFIGTKSDLYSTYTEEY 339
           LIL               L+++I  ++      ++  P N+D         L+  Y +E 
Sbjct: 302 LILLVLNASEPLHQDELELMEQIRGRQCIVIMNKMDLPSNLDLDI------LHRYYPDEL 355

Query: 340 DHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNE 397
              +S    EG++ L   I ++  S + +    +  S+ RH+  L ++ + L+ A    E
Sbjct: 356 IVPMSVKAQEGIDRLEEAISNLFFSGQIEGGDLTYVSNVRHIALLKKSKQSLQDAYDAAE 415

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   +D+I  ++R+A   L +I G    + L+D IFS+FC+GK
Sbjct: 416 QLIPIDMIQIDVRMAWEQLSEILGEAVGDSLIDQIFSQFCLGK 458


>gi|329925110|ref|ZP_08280054.1| tRNA modification GTPase TrmE [Paenibacillus sp. HGF5]
 gi|328940229|gb|EGG36561.1| tRNA modification GTPase TrmE [Paenibacillus sp. HGF5]
          Length = 458

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 251/463 (54%), Gaps = 36/463 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI A+ST      I+IIR+SGP   Q  E I K K    +  S    +G  +D   G  
Sbjct: 4   DTIAAISTAVGEGGIAIIRVSGPDSVQEVERIFKSKNKLTQVESHTVHYGHIVDPKTGEN 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           L++ L+ V  +P SFT ED  E   HGG+  V  +++ L ++ N+RLA PGEF++RAF N
Sbjct: 64  LEEVLVTVMRAPRSFTTEDVVEISAHGGVISVKRVMDLLLQL-NIRLAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI S+++    ++++ + G LS    +    L    + IE ++D+ E
Sbjct: 123 GRIDLSQAEAVMDLIRSKSDRAFSVALKQVEGTLSRKINELRHTLVETLAHIEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             DV++ +S+ +      +  +I   +   + G+I+R G    I+G  N GKSSL N LA
Sbjct: 183 H-DVESLTSEFIKEKSKLVMGEIDKLLKTAQEGKILREGITTAIVGRPNVGKSSLLNTLA 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVTDIPGTTRDV+   + +    +K+ DTAGIRET D+VE+ G++R+   V  AD
Sbjct: 242 QDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRETMDVVEQIGVERSKHAVNEAD 301

Query: 301 LIL---------------LLKEINSKK------EISFPKNIDFIFIGTKSDLYSTYTEEY 339
           LIL               L+++I  ++      ++  P N+D         L+  Y +E 
Sbjct: 302 LILLVLNASEPLHQDELELMEQIRGRQCIVIMNKMDLPSNLDLDI------LHRYYPDEL 355

Query: 340 DHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNE 397
              +S    EG++ L   I ++  S + +    +  S+ RH+  L ++ + L+ A    +
Sbjct: 356 IVPMSVKAQEGIDRLEEAISNLFFSGQIEGGDLTYVSNVRHIALLKKSKQSLQDAYDAAD 415

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   +D+I  ++R+A   L +I G    + L+D IFS+FC+GK
Sbjct: 416 QLIPIDMIQIDVRMAWEQLSEILGEAVGDSLIDQIFSQFCLGK 458


>gi|90194128|gb|ABD92625.1| ThdF [Mannheimia glucosida]
          Length = 428

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/423 (33%), Positives = 233/423 (55%), Gaps = 27/423 (6%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           + I+R+SGP    V + +  K  P PR A+   F   DG +LD+G+ + F +P SFTGED
Sbjct: 8   VGILRVSGPLAETVAQAVLGKTLP-PRIANYLPFKDEDGTVLDQGIALFFKAPNSFTGED 66

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +++ +L+ + ++  LR+A  GEFS +AF N K+DL +AE++ADLI + +
Sbjct: 67  VLELQGHGGQVILDLLLKRILQVKGLRIARAGEFSEQAFLNDKLDLAQAEAIADLIDATS 126

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196
           E   R +++ + GE S+     +D + ++R+++EA +DF +EE +   +  ++   LN+I
Sbjct: 127 EQAARSALKSLQGEFSNKINALVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLNEI 185

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +   + +     QG    I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTTRD
Sbjct: 186 IAQLDGVRREAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRD 242

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           VL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL+ +   ++   F
Sbjct: 243 VLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWEEIAQADHVLLMIDSTEQQADQF 302

Query: 317 -----------PKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTGEGLEELINKIK 359
                      P N+    I  K DL          +++  + +S+ T  G++ L   +K
Sbjct: 303 RQEWAEFLAKLPANMPVTVIRNKVDLSGEQEGLIQVDDFTMIRLSAQTKVGVDLLREHLK 362

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGK 418
             +  +         + +RHL  L     +LE   +   +    +++AE LR+   +L +
Sbjct: 363 KSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFLAGELLAEELRMVQNALSE 421

Query: 419 ITG 421
           ITG
Sbjct: 422 ITG 424


>gi|315644290|ref|ZP_07897460.1| tRNA modification GTPase TrmE [Paenibacillus vortex V453]
 gi|315280665|gb|EFU43954.1| tRNA modification GTPase TrmE [Paenibacillus vortex V453]
          Length = 458

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 159/457 (34%), Positives = 248/457 (54%), Gaps = 24/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60
           +TI A+ST      I+IIR+SGP   Q  E I K K    +  S    +G       G  
Sbjct: 4   DTIAAISTAVGEGGIAIIRVSGPDAVQEVERIFKSKNKLTQVDSHTVHYGHIADPKTGEN 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           L++ L+ V  +P SFT ED  E   HGG+  V  +++ L  + N+RLA PGEF++RAF N
Sbjct: 64  LEEVLVTVMRAPRSFTTEDVVEISAHGGVISVKRVMDLLLLL-NIRLAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI S+++    ++++ + G LS    +    L    + IE ++D+ E
Sbjct: 123 GRIDLSQAEAVMDLIRSKSDRAFSVALKQVEGTLSRKINELRHTLVETLAHIEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             DV++ +S+ +      + ++I   +   + G+I+R G    I+G  N GKSSL N LA
Sbjct: 183 H-DVESLTSEFIKEKSQHVMHEIDKLLKTAQEGKILREGITTAIIGRPNVGKSSLLNTLA 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVTDIPGTTRDV+   + +    +K+ DTAGIRET D+VE+ G++R+   V  AD
Sbjct: 242 QDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRETMDVVEQIGVERSKHAVNEAD 301

Query: 301 LILLL---KEINSKKEISFPKNI---DFIFIGTKSDLYST---------YTEEYDHLISS 345
           LILL+    E   + E+   + I     I I  K DL S          Y EE    +S 
Sbjct: 302 LILLVLNASEPLHQDELELMEQIRGRQCIVIMNKMDLPSQLDLDILHRYYPEELIVPMSV 361

Query: 346 FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
              EG++ L   I ++  S + +    +  S+ RH+  L ++ + L+ A    E+   +D
Sbjct: 362 KAEEGIDRLEEAISNLFFSGQIEGGDLTYVSNVRHIALLKKSKQSLQDAYDAAEQLIPID 421

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I  ++R+A   L +I G    + L+D IFS+FC+GK
Sbjct: 422 MIQIDVRMAWEQLSEILGEAVGDSLIDQIFSQFCLGK 458


>gi|297566657|ref|YP_003685629.1| tRNA modification GTPase TrmE [Meiothermus silvanus DSM 9946]
 gi|296851106|gb|ADH64121.1| tRNA modification GTPase TrmE [Meiothermus silvanus DSM 9946]
          Length = 436

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 144/441 (32%), Positives = 231/441 (52%), Gaps = 18/441 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGRIL 61
           E I A++T     A+ I+RLSG    +V   + + K P   +   R+ +G      G +L
Sbjct: 8   EPIAAIATPPGKGAVGIVRLSGVGALEVAAKVWRGKDPRKLEGG-RFTYGTIVDARGEVL 66

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L++VF +P S+TG+D+ E   HG  AV+  +L+ L +    RLA PGEF+ RA+ NG
Sbjct: 67  DEALMLVFRAPHSYTGQDAVELQTHGSPAVLRQVLQALLEA-GARLAQPGEFTLRAYLNG 125

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++  L+ SE++  RR ++ G++  LS       ++L  + + I+A LD+ EE
Sbjct: 126 RMDLAQAEAVLALVESESDAARRQALRGLARSLSQQIEGMAERLYDLLAHIQAWLDYPEE 185

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
                    E+   +  +  ++   ++    G I   G ++ ++G  NAGKSSL NAL  
Sbjct: 186 ----GVEPAEIQTTVSEVLAEVERLLATAPAGRIAHKGARLALVGAPNAGKSSLLNALLG 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            + AIVT IPGTTRD L   L++ G  +   DTAG+R+TDD VE+ G++R     + ADL
Sbjct: 242 YERAIVTPIPGTTRDYLEAPLEIAGVPITAVDTAGVRQTDDPVERSGVERALKIAQEADL 301

Query: 302 ILLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           +L L +             +    + TK+DL   + +     +SS TG GLE L   I  
Sbjct: 302 VLYLVDAAEPPPTPPDLPWERALKVATKADLPPAWEDAEFIRVSSQTGFGLEALRKAIHD 361

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSLGKI 419
            L  +  +    I S++RH   L +  ++L  A    +D  GL + A     A  +L +I
Sbjct: 362 KLIGQASEGEIWI-SNERHTQALYEARQHLLEALTAPQDLAGLSVQA-----ALDALNQI 415

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
            G    E+++  +F  FC+GK
Sbjct: 416 LGKDVSEEVIARVFRNFCVGK 436


>gi|33860749|ref|NP_892310.1| tRNA modification GTPase TrmE [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|46577387|sp|Q7V395|MNME_PROMP RecName: Full=tRNA modification GTPase mnmE
 gi|33633691|emb|CAE18648.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 460

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 168/456 (36%), Positives = 252/456 (55%), Gaps = 37/456 (8%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRILDKG 64
           AVS G     I++IR+SG      C+ I + K  +  + S R F G     L+ + +D+ 
Sbjct: 17  AVSLG--KGGIAVIRVSGEEAINSCKNIVETKSKYAWE-SHRVFHGFIKDNLENKFIDEI 73

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-AKMPNLRLANPGEFSRRAFENGKI 123
           L+ V  SP SFTGED  E H HGG+ VVN ++E L +    +R+ANPGEFS+RAF NGKI
Sbjct: 74  LITVMHSPNSFTGEDIVELHCHGGVIVVNKVIETLLSNNTGVRIANPGEFSQRAFLNGKI 133

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AES+  LI+++      ++  G+ GE+        + L    S IEA +DF  EED
Sbjct: 134 DLTQAESINQLINAKNLKSAEIAFNGVKGEIKKKIDIIKNDLIEQLSEIEARVDF--EED 191

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
              F+  +   +I  +K  I   I   K G  I NG  I ++G +N GKSSL N L+KK+
Sbjct: 192 FSEFNYNDFSRNIKIIKEKIKILIENSKRGAHIHNGISIALIGKTNVGKSSLLNLLSKKE 251

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT IPGTTRD++ ++L ++   +KI DTAGIRETD+ +E  GI ++F  ++N+D I+
Sbjct: 252 KAIVTSIPGTTRDIIEVNLTIKDIPIKIIDTAGIRETDEYIENIGIDKSFEMIQNSDYII 311

Query: 304 LLKEI------NSKKEIS-FPKNIDFIFIGTKSDLYSTYTEEYDHLISSF-----TGEGL 351
            L  +      + +K IS  P+      +G K DL  +      +L +S        EG 
Sbjct: 312 YLYSLEEGLNKDDEKIISKIPQEKLITILGNKKDLIDSKKVNKKNLSNSVLMSIKNDEGE 371

Query: 352 EELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD------CGLDI 404
           +EL+ KI K   S +F+ +   +  ++R + +L+  ++     +LN+ D         D+
Sbjct: 372 KELVEKIVKKCGSKEFENIDIFL--NERQISNLTDCLK-----NLNDTDPIIANKLPFDL 424

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +R    +L +ITG    E LL+ IFSKFCIGK
Sbjct: 425 LSIEVRDGIKNLSRITGQELTEDLLNNIFSKFCIGK 460


>gi|163943164|ref|YP_001648048.1| tRNA modification GTPase TrmE [Bacillus weihenstephanensis KBAB4]
 gi|229136309|ref|ZP_04265056.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST196]
 gi|205829111|sp|A9VTM0|MNME_BACWK RecName: Full=tRNA modification GTPase mnmE
 gi|163865361|gb|ABY46420.1| tRNA modification GTPase TrmE [Bacillus weihenstephanensis KBAB4]
 gi|228647181|gb|EEL03269.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST196]
          Length = 458

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 152/459 (33%), Positives = 255/459 (55%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LD-G 58
           E +TI A+ST     AI+I+R+SG    +  + I K K    + +S    +G    LD  
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAIEKVDRIFKGKD-LTQVSSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + IE ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETLAHIEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLIVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQEIDMERVTDLAVGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  R +  A    E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGRTINDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L  A   LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|315637643|ref|ZP_07892849.1| tRNA modification GTPase TrmE [Arcobacter butzleri JV22]
 gi|315478097|gb|EFU68824.1| tRNA modification GTPase TrmE [Arcobacter butzleri JV22]
          Length = 446

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 150/457 (32%), Positives = 248/457 (54%), Gaps = 33/457 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           E +TI A++T     +ISI+R+SG    ++   I KK     R A+L   +     I+D+
Sbjct: 3   ENDTIVAIATANGIGSISIVRVSGAKALEIATKISKKNNFQARLATLSTIYDSKNEIIDE 62

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L+I F +P SFTGED  EF  HGG+A+ N I++E+      RLANPGEFS+RAF N KI
Sbjct: 63  ALVIYFKAPFSFTGEDVVEFQCHGGVAISNMIVDEVLN-AGARLANPGEFSKRAFFNNKI 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE+++ +I + +    +L    + GEL++   +  + L  + ++ E  +D++EE D
Sbjct: 122 DLTKAEAISKIIEARSADAVKLLARQLKGELTNFVDEIREDLLFMLAYTEVSIDYAEE-D 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +     +++ N +  +   +S+ +   +  E +  G+K+ I+G  N GKSSL N L   D
Sbjct: 181 LPTDIYEQIENKMQKISLKLSNTLEASRRREGMIEGFKVAIIGKPNVGKSSLLNKLLNFD 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AI++DI GTTRD +   + +  +++KI DTAGIR+  D++EK GI+++   +  AD+++
Sbjct: 241 RAIISDIAGTTRDTIEESVRIGTHIIKIVDTAGIRDASDVIEKIGIEKSIQAINEADIVI 300

Query: 304 ------------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-DHLIS 344
                             L+KE NS KE+        I +  KSDL + + +   D  I 
Sbjct: 301 ALFDNSKICDDEDKKILDLIKE-NSDKEV--------IVVLNKSDLQNQFDKNVLDSFIE 351

Query: 345 SFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
             T E +  LI +++ IL SN F     ++ S KR +  +  T+  + +A    K   L+
Sbjct: 352 LSTKEDINPLIKELEEILDSNTFGD-DITLVS-KRQVLAVENTLYNIGLAKEPLKSGELE 409

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             A  +  A   +  IT   D +++LD++F +FC+GK
Sbjct: 410 FFAHFITQALEDISSITRPYDNDEMLDVMFGEFCLGK 446


>gi|332687269|ref|YP_004457043.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Melissococcus
           plutonius ATCC 35311]
 gi|332371278|dbj|BAK22234.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Melissococcus
           plutonius ATCC 35311]
          Length = 466

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 151/463 (32%), Positives = 261/463 (56%), Gaps = 29/463 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLD--- 57
           E +TI A+ST     AISI+RLSG    ++ + I +   KK       ++ Y   +D   
Sbjct: 7   ELDTIAAISTPPGEGAISIVRLSGKDAVKIADKIYQAGNKKLKDVATHTIHYGHIIDPKK 66

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ ++ V  +P++FT ED  E + HGG+ VVN +L+ L      RLA PGEF++RA
Sbjct: 67  NKVVDEVMVSVMRAPKTFTCEDVVEINCHGGMIVVNKLLQ-LILHEGARLAEPGEFTKRA 125

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLI S+T+    +++  + G LS+L      ++    + +E ++D
Sbjct: 126 FLNGRIDLSQAEAVMDLIRSKTDKAMSMALNQLDGSLSNLIRSLRQEILETLAQVEVNID 185

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  +++ +L     +K  I   +   + G+I+R G   VI+G  N GKSSL N
Sbjct: 186 YPEYDDVEELTTRLLLEKATSVKKQIQQLLMTAQQGKILREGLSTVIVGRPNVGKSSLLN 245

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K++ AIVTD+ GTTRD +   ++L G  +K+ DTAGI ET+DIVEK G++++   ++
Sbjct: 246 HLLKEEKAIVTDVAGTTRDTIEEYINLRGIPLKLVDTAGIHETEDIVEKIGVEKSRQALQ 305

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL--------YSTYTEEYDH 341
            ADLI+L+  +N  +E++            +  I +  K DL          ++  + + 
Sbjct: 306 TADLIVLV--LNQSEELTNEDQQLLEMTGGLKRIILLNKMDLPNQLEKEKLRSFLSDQEE 363

Query: 342 L--ISSFTGEGLEELINKIKSILSN-KFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397
           L  +S  + EG+++L  +I ++  N + +    +  S+ RH+Y L Q +  L E+    E
Sbjct: 364 LLPVSVLSSEGIDKLEIEIANLFFNGQTEAKDATYLSNTRHIYLLEQALSALDEVIHGIE 423

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           K+  +D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 424 KEMPVDLVQIDMTRCWDFLGEIVGDSVQDELITQLFSQFCLGK 466


>gi|189499228|ref|YP_001958698.1| tRNA modification GTPase TrmE [Chlorobium phaeobacteroides BS1]
 gi|189494669|gb|ACE03217.1| tRNA modification GTPase TrmE [Chlorobium phaeobacteroides BS1]
          Length = 473

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 157/466 (33%), Positives = 251/466 (53%), Gaps = 31/466 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-CKKKKP---FPRKASLRYFFG--LD 57
           + E I AV+T     A++++R+SG   F + + +  K + P             FG   D
Sbjct: 10  QGEPIAAVATPVGVGALAVVRMSGEGVFSIADRVFTKVRSPETSLADSPGYTAHFGKLYD 69

Query: 58  G-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           G R++D+ +++VF SP+SFT ED  E   HGG  V   +L+ L      RLA PGEF+RR
Sbjct: 70  GDRMIDEVIVLVFRSPDSFTVEDMVEITCHGGPVVTKHVLKLLLD-NGCRLAEPGEFTRR 128

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDLL+AE++ ++I + +E   R ++  MSG LS   G   ++L H  + +E +L
Sbjct: 129 AFLNGRIDLLQAEAIGEMIHARSESAYRTAVNQMSGGLSGRLGTLREQLLHSCALLELEL 188

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DFSEE DV+  S +E+   +  L+ ++   +   + G ++R G    I+G  NAGKS+L 
Sbjct: 189 DFSEE-DVEFQSREELSGQVENLQQEVDKLVQSYQHGRLLREGVATAIIGRPNAGKSTLL 247

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  ++ AIV+ +PGTTRD +      E  + +++DTAG+RE  + +E EGI+R++ ++
Sbjct: 248 NALLGEERAIVSHMPGTTRDYIEECFIYEKTMFRLTDTAGLREAAEEIEHEGIRRSYEKI 307

Query: 297 ENADLILLLKEINS---KKEISF-------PKNIDFIFIGTKSDLYSTYTEEYDHL---- 342
             ADLIL L +I +   ++E S          +I  + +  K+D      E  + +    
Sbjct: 308 AEADLILYLLDIGASDYEEETSTVTELRQKHPDIQLLVVANKTDTTEDSAERSEKVAEKT 367

Query: 343 ------ISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-S 394
                 IS+   +GL+ L   + S++    K    S+  +  RH   L      L  A  
Sbjct: 368 GCQVLGISALKEDGLDRLKAGMSSMVEGLDKLHDASVLVTSMRHYEALRNASDALRNARE 427

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L +     ++IA  LR A   +G+ITG V  E++L++IF +FCIGK
Sbjct: 428 LIDAQSETELIAFELRSALDYVGEITGKVVNEEVLNVIFGQFCIGK 473


>gi|87123548|ref|ZP_01079399.1| tRNA modification GTPase TrmE [Synechococcus sp. RS9917]
 gi|86169268|gb|EAQ70524.1| tRNA modification GTPase TrmE [Synechococcus sp. RS9917]
          Length = 460

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 145/442 (32%), Positives = 236/442 (53%), Gaps = 27/442 (6%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGR-ILDKGLLIVFPSPES 74
           I++IRLSGP+       I +     P + S R  +G     DG+  +D+ L++   +P S
Sbjct: 25  IAVIRLSGPAAQPAVRAITRIPGYQPWE-SHRVLYGHVLAADGQERIDEVLVLPMLAPRS 83

Query: 75  FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134
           FT ED  E H HGG+  V  +L  + + P +R A PGEFS+RA  NG++DL  AE+++DL
Sbjct: 84  FTAEDVVEIHCHGGVMAVQRVLARVLEQPGVRRALPGEFSQRAVLNGRLDLTRAEAISDL 143

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           +++ ++   +L+M G+ G +        ++L    S +EA +DF  EED+       +L 
Sbjct: 144 VAARSQRAAQLAMAGVDGGIQRRTTALRERLLDQLSELEARVDF--EEDLPPLDGAALLA 201

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           ++  ++ ++   ++ G+    +R+G ++ ++G  N GKSSL N L++++ AIVTD+PGTT
Sbjct: 202 ELQAVRAELLQLVADGERSAALRSGLRVALVGRPNVGKSSLLNRLSRRERAIVTDLPGTT 261

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------ 308
           RD+L  ++ LEG  + + DTAGIR T D VE+ GI R+   + +ADL+LLL ++      
Sbjct: 262 RDLLESEIVLEGVPITLLDTAGIRATTDAVEQLGIARSHDALASADLVLLLFDLSEGWTA 321

Query: 309 -NSKKEISFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLEELINKIKS- 360
            +       P+ +  + +G K+DL  +           D  +S+ TG G  ELI  + + 
Sbjct: 322 DDQALRQRIPEEVPHLLVGNKADLSPSSGAGLGAAVAADVCLSASTGAGEAELIQALLAR 381

Query: 361 --ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
              L++    L  +               R  ++A+   +    D    +LR A  SLG 
Sbjct: 382 CGALTDGSLLLALNQRQADLAQQAAEALARSEQVAA---EGLPWDFWTIDLRQAIQSLGA 438

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           ITG    E +LD IFS+FCIGK
Sbjct: 439 ITGEELSESVLDRIFSRFCIGK 460


>gi|291548774|emb|CBL25036.1| tRNA modification GTPase trmE [Ruminococcus torques L2-14]
          Length = 462

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 161/468 (34%), Positives = 251/468 (53%), Gaps = 40/468 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDG-RIL 61
           ++TI A+STG   S I I+R+SG    ++ + + K K+      +    +G  +DG   +
Sbjct: 3   QDTIAAISTGMTNSGIGIVRISGSEALEIADRVYKGKETITEVPTHTIHYGHVMDGDETV 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L++V   P +FTGED+ E + HGG  VV+ +LE + K    R A PGEF++RAF NG
Sbjct: 63  DEVLVMVMRGPRTFTGEDTVEINCHGGTYVVSRVLETVLK-AGARPAEPGEFTKRAFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ D+I+SE E   + S+  + G + +   +  +K+ +  +FIE  LD  E 
Sbjct: 122 KMDLSQAEAVIDVITSENEYALQSSISQLKGSVKNRIKEIREKIIYHTAFIETALDDPEH 181

Query: 182 EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
             V  +    KE   +++   + +   I     G I++ G + VILG  NAGKSSL N L
Sbjct: 182 ISVDGYGEVLKEAAEEVI---DQLKELIDSSDDGRIMKEGIQTVILGKPNAGKSSLLNIL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A  D AIVTDI GTTRDVL   + L+G  + I DTAGIR+TDDIVEK G+ +     + A
Sbjct: 239 AGHDRAIVTDIEGTTRDVLEEQIRLQGLTLNIIDTAGIRQTDDIVEKMGVDKAKEYAKEA 298

Query: 300 DLILLLKEINSKKEISFPKNIDFIF------IGTKSDLYSTYTEEYDH------------ 341
           DLI+ + + +   + +  K  D I+      +  KSDL +  TEE               
Sbjct: 299 DLIIYVVDASRNLDENDEKIFDLIYDKRTVILLNKSDLDTVVTEEMIRERISQKGVQKQI 358

Query: 342 ---LISSFTGEGLEELINKIKSILSNK----FKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
               IS+   +G++EL N +K++         +++  +    K  L +  ++++ +    
Sbjct: 359 PVIAISAKEEQGIKELENTVKAMFLKGDLSFNEEVYITNARQKNALVNARESMKKV---- 414

Query: 395 LNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   D G+  D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 415 IFSIDAGMPEDFYSIDLMDAYESLGNITGESIGEDLVNEIFSKFCMGK 462


>gi|313887681|ref|ZP_07821363.1| tRNA modification GTPase TrmE [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846290|gb|EFR33669.1| tRNA modification GTPase TrmE [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 459

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 259/463 (55%), Gaps = 27/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--L 56
           M +  +TI A+ST    + I+I+R+SG     + +  F+    K      + ++ +G   
Sbjct: 1   MANLNDTIAAISTAIGEAGIAIVRMSGDDSVNIIDEIFVSASGKKMAEAENRKFLYGHIA 60

Query: 57  DG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           DG +++D+ L++    P S+T ED  E H HGG+  V  IL  L      RLA  GEF++
Sbjct: 61  DGDKLIDEVLVVKMKGPHSYTAEDIVEIHCHGGVVSVKRILN-LILSKGARLAEKGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           R F NG+IDL +AE++ D+I ++T++   + +  +SG LS +  +  D+L  +++ I A+
Sbjct: 120 RGFLNGRIDLTQAEAVIDMIKAKTDISFDMGLNQLSGALSEVLNKLKDELVSMQALIVAN 179

Query: 176 LDFSEEEDVQNFSSKEVL--NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           +DF +E D+++ +  +++  +D +  K D  + +   K   ++R+G   VILG  N GKS
Sbjct: 180 IDFPDE-DIEDAAYHDLMERSDKILEKMD--NLLDNSKNSRLLRDGINTVILGKPNVGKS 236

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N L K D AIVTDI GTTRD++   ++L+G L+KI+DTAGIRETDD VEK G+    
Sbjct: 237 SLLNGLLKYDRAIVTDIAGTTRDIIEDYINLDGVLLKITDTAGIRETDDEVEKIGVNIAR 296

Query: 294 LEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-------D 340
            +++ ADL++ + +I      + ++ ++  K+   I I  K DL    ++E        D
Sbjct: 297 EKLKEADLVIAIFDISRDFDKDDEEILNLIKDKKHITILNKDDLDQKISDEEIEKYFKDD 356

Query: 341 HL-ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVR-YLEMASLNE 397
           +L +S    E ++++ N I  +    + +    SI S+ RH+  L +  +  LE+    +
Sbjct: 357 YLRLSVMENESVKKIENLIIDLFFDGELQISSDSILSNIRHINALKEAKKALLEVNESLK 416

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           K   LD+I  +L      + +ITG +  E +LD +FS FCIGK
Sbjct: 417 KKVFLDLIEVDLENVIGHISEITGTITTEDILDRVFSDFCIGK 459


>gi|70984128|ref|XP_747583.1| mitochondrial GTPase (Mss1) [Aspergillus fumigatus Af293]
 gi|66845210|gb|EAL85545.1| mitochondrial GTPase (Mss1), putative [Aspergillus fumigatus Af293]
 gi|159122369|gb|EDP47490.1| mitochondrial GTPase (Mss1), putative [Aspergillus fumigatus A1163]
          Length = 604

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 124/326 (38%), Positives = 188/326 (57%), Gaps = 29/326 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK--ASLRYFFGLD-----GR 59
           TI+A+ST    +AI+++R+SG +C Q+   +C    P PR   A++R  +          
Sbjct: 66  TIYALSTAPGRAAIAVVRVSGSACVQIYRALCPSA-PLPRARVAAVRTLYDPTQEPSANT 124

Query: 60  ILDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM----PNLRLANPGEFS 114
           +LD G L++ FP P++ TGED  E H+HGG A+V  +L  +A+       +R A PGEF+
Sbjct: 125 VLDAGALVLYFPGPKTVTGEDVLELHLHGGPAIVKSVLAAIARSNRPESTVRYAEPGEFT 184

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAF N ++DL + E+L D ++++TE QRRL++ G S  LS  Y  W  +L + R  +EA
Sbjct: 185 RRAFMNNRLDLPQIEALGDTLTADTEQQRRLAVRGASDALSRRYESWRQQLLYARGELEA 244

Query: 175 DLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            +DFSE+    E  ++F  + V   +  L+  +  HI     GE++RNG KI +LG  NA
Sbjct: 245 LIDFSEDQYFDESPEDFV-RSVAGQVRALQTQLRLHIENASKGELLRNGIKIALLGAPNA 303

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI------- 283
           GKSSL N +  K+ AIV+   GTTRD++ + +DL G+  K+ D AGIR            
Sbjct: 304 GKSSLLNRIVGKEAAIVSTEEGTTRDIVDVGVDLGGWYCKLGDMAGIRSEKSTSTGQGTA 363

Query: 284 ----VEKEGIKRTFLEVENADLILLL 305
               VEKEGI+R       +D+++L+
Sbjct: 364 IIGAVEKEGIRRARARALESDVVVLV 389


>gi|33864338|ref|NP_895898.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9313]
 gi|46577389|sp|Q7V491|MNME_PROMM RecName: Full=tRNA modification GTPase mnmE
 gi|33641118|emb|CAE22248.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus str. MIT 9313]
          Length = 470

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 247/459 (53%), Gaps = 50/459 (10%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFG--LD--GR-ILDKGLLIVFP 70
            I+++RLSGP+     E + +     P +    S R  +G  +D  G+  +D+ L+++  
Sbjct: 25  GIAVVRLSGPAA----EVVGRSVVSIPGQQLWVSHRVLYGHVMDESGKERIDEVLVLLMK 80

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
            P SFTGED  E H HGG+  V  +LE +   P++R A PGEFS+RA  NG++DL +AE+
Sbjct: 81  GPRSFTGEDVVEIHCHGGLMAVQRVLERVLAQPHVRRALPGEFSQRAVLNGRLDLTQAEA 140

Query: 131 LADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +++L+++ +    +L+M G+ G     ++SL  + +D+L    S +EA +DF  EED+  
Sbjct: 141 ISELVAARSRRAAQLAMTGVDGGIQRRITSLRERLLDQL----SELEARVDF--EEDLPP 194

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
               E+L ++  ++ ++   +   K G+++R G ++ ++G  N GKSSL N L++++ AI
Sbjct: 195 LDGAELLLELQCVRRELEQLVEDAKRGDVLRQGLQVALVGRPNVGKSSLLNRLSRRERAI 254

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA------- 299
           VTD+PGTTRDVL  ++ LEG  + + DTAGIR T D +E+ GI R+   +  A       
Sbjct: 255 VTDLPGTTRDVLESEIVLEGVPITLVDTAGIRATQDALEQLGIDRSHQALAAADVAVLVF 314

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT---------------EEYDHLIS 344
           DL L     ++      P ++  + +G K+DL                    +  D ++S
Sbjct: 315 DLSLGWTADDAALLAQIPDDLPRLLVGNKADLQPASMAASLMVASLGNEVDGKTVDVMLS 374

Query: 345 SFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRH--LYHLSQTVRYLEMASLNEKDCG 401
           + TG+G E LI  + K+  +++ + L  ++   ++           R  E A   E    
Sbjct: 375 ALTGQGEEALIKAVLKTCGASEAQGLVVALNQRQQDLAAAAAIALARTQEAA---EHQLP 431

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D    +LR A  SLG+ITG    E +LD IFS+FCIGK
Sbjct: 432 WDFWTIDLRQAISSLGEITGEEITEAVLDRIFSRFCIGK 470


>gi|324514013|gb|ADY45734.1| tRNA modification GTPase mnmE [Ascaris suum]
          Length = 471

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 244/463 (52%), Gaps = 42/463 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+S+G+LPSAI+IIR+SG       + + K++K   R       F + G ++D+ + 
Sbjct: 22  TIFALSSGSLPSAIAIIRVSGEESRMCLQRLTKRQKFKARYMFYSSLFDVGGELIDRAMA 81

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR-----RAFENG 121
           +  P P +FTGED+AE +VHG  AVVN + E L    N+R A  GEF++     RAF N 
Sbjct: 82  VFLPGPSTFTGEDTAEIYVHGSRAVVNCVCETLNHFENVRPAKAGEFTKRLRFARAFFNS 141

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+D+   +SL+ L+S+ET+ QR L++   S ++        + L  +   +EA +DF+  
Sbjct: 142 KLDIHGVQSLSYLLSAETQRQRMLAVR--SNQIGLAVSSIRESLVQLACSLEAGIDFA-- 197

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +DV  F     L+ +  + +++     + + G +I +G ++V+LG +N GKSSL N +A+
Sbjct: 198 DDVP-FDWDSFLSHVRDVTSELKMIEQRAQKGCLIIDGIRVVMLGQTNVGKSSLLNCIAE 256

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +DVAIV+++ GTTRD L   ++L    V  +DTAGIR   D +E E I RT      A  
Sbjct: 257 RDVAIVSEVEGTTRDALEARIELASVPVIFTDTAGIRSAHDFLEAESISRTIARAAEAH- 315

Query: 302 ILLLKEINSKKEISFPKNID-------------FIFIGTKSDLYSTYTEEYDHLISSFTG 348
            +LL  +++ K +     +D              + +  K DL   +     H++SS   
Sbjct: 316 -VLLPVVDASKCVDIAAEVDVLLRQCHCEDASRVVVVCNKIDLIPAHMH---HVVSSLPW 371

Query: 349 EGL-EELINK--IKSILSNKFKKLPFSIP--------SHKRHLYHLSQTVRYLEMASLNE 397
           + +    IN+  I +IL    +++    P        S  R    LS  V  LE    + 
Sbjct: 372 KVVFTSCINRTGITNILEAVKEQIAALCPDEGDDALLSRYRQRILLSDAVSLLEQVQ-ST 430

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  L   AE +R AS  +G+I+G +  E++LD IFS FCIGK
Sbjct: 431 SDAAL--AAEYVREASALIGEISGAIVNEEILDRIFSSFCIGK 471


>gi|117927030|ref|YP_867647.1| tRNA modification GTPase TrmE [Magnetococcus sp. MC-1]
 gi|205415778|sp|A0LE48|MNME_MAGSM RecName: Full=tRNA modification GTPase mnmE
 gi|117610786|gb|ABK46241.1| tRNA modification GTPase trmE [Magnetococcus sp. MC-1]
          Length = 468

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 155/469 (33%), Positives = 245/469 (52%), Gaps = 39/469 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKK------KPFPRKASLRYFFG 55
           HE++ I  ++T    S ++++RLSGP     V  ++   K        F  +   R  F 
Sbjct: 8   HEQDCIIGMATPPGTSGVAVLRLSGPGVLSLVVPYLYTPKGEKVAESGFKPRVMRRLNF- 66

Query: 56  LDGRI----LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
           +D +     LD  L++ FP+P SF+GED  E H HG   VV  I+E L     +R A+PG
Sbjct: 67  IDPQAPDVPLDHMLVVHFPNPHSFSGEDMVELHGHGAPVVVKRIMEVLVAH-GVRPADPG 125

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EFS+RAF N K+DL++AE+L  LI + +    R +   M+G LS       D L    + 
Sbjct: 126 EFSKRAFFNNKMDLVQAEALMGLIEATSLRAAREASRQMTGTLSEHLMALKDHLVLTYAH 185

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           +EA LDFS+E D++  S   +L+ + ++   I   +   +LG  +R+G+++ I+G  N G
Sbjct: 186 LEAALDFSDE-DIEPESEGGLLDRLAYVHAGIKKMLGTAELGRQMRDGFELAIVGRPNVG 244

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSLFNAL+ +D AIVTD+ GTTRD+   +L++ G  + + DTAG+RE+DD VE+ GI+R
Sbjct: 245 KSSLFNALSGEDRAIVTDLAGTTRDLNESNLEIHGLPILLVDTAGLRESDDPVERIGIER 304

Query: 292 TFLEVENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
            +  VE AD I+               LL+ +  +K +     +D +  G   +    + 
Sbjct: 305 AWQRVERADGIVFVAEAQLGVTLEDKALLQRLPKEKALWVWNKLDQLE-GALPECLQDWP 363

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLP-----FSIPSHKRHLYHLSQTVRYLE 391
           EE    +S  TGEGLE ++  I +    + ++LP       I   ++        V   E
Sbjct: 364 EEQICGVSCHTGEGLESVVAHIVA----RMEQLPEHGEGVVIMQLRQQQTLQQAIVLIEE 419

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +      L+++AE L  +   L ++ G  D E +L ++FS FC+GK
Sbjct: 420 AQEMLANGQWLELVAEPLTRSIDQLTQLMGNTDYEDVLGMVFSSFCVGK 468


>gi|309775110|ref|ZP_07670122.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917065|gb|EFP62793.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 443

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 149/448 (33%), Positives = 253/448 (56%), Gaps = 21/448 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRILD 62
           +TI A+ST A+  AISIIR+SG     + + I        +  ++ Y +  D     ++D
Sbjct: 4   DTIAAISTAAVDGAISIIRMSGTDALSIADSILNFNIKEKKSHTISYGYVYDQEHDELID 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+ VF +P++FT ED  E + HGG  +   IL  L      RLANPGEF++RAF NG+
Sbjct: 64  EVLVSVFHAPKTFTCEDIVEINCHGGSFITKKILR-LCLAHGARLANPGEFTQRAFLNGR 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AE++ D+I ++T    R++M+G+ G +  L    + +L  I + IE ++D+ E +
Sbjct: 123 IDLTQAEAVNDMIQADTNENARMAMQGIRGSVKKLLDPLLQELLDIIANIEVNIDYPEYD 182

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV+  S++ +          I + + + + G++++ G K  I+G  N GKSSL NAL ++
Sbjct: 183 DVEQLSTEIIQPKARAWMKRIQNILDRAQSGQLLKEGIKTAIVGKPNVGKSSLLNALLEE 242

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRD++   + L+G  + + DTAGIRET D+VE+ GI+R+   + +A L+
Sbjct: 243 EKAIVTDIAGTTRDIVEGHIHLQGLTLNLIDTAGIRETSDVVEQIGIQRSLKAITDAQLV 302

Query: 303 LLLKEINS-------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEEL 354
           +++ + NS       ++ +   ++   I +  K+D+    ++  D + I++  GE +E L
Sbjct: 303 IVVLD-NSRALDEQDRELLKLTRDKTRIIVYNKTDV----SKRSDGICIAAAKGE-IEAL 356

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLA 412
           I +I  +       L   +  ++R +  + +    +  A L   + G  LDI+  +++ A
Sbjct: 357 IAEIHKLFDRHQLVLQEPLLHNERQIALMMKAENSMHQA-LEAMEAGMELDIVEIDIQNA 415

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             SL +I G V  E LLD +FS FC+GK
Sbjct: 416 YTSLKEILGEVHREDLLDTLFSNFCLGK 443


>gi|229014650|ref|ZP_04171764.1| tRNA modification GTPase mnmE [Bacillus mycoides DSM 2048]
 gi|228746661|gb|EEL96550.1| tRNA modification GTPase mnmE [Bacillus mycoides DSM 2048]
          Length = 458

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 152/459 (33%), Positives = 255/459 (55%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LD-G 58
           E +TI A+ST     AI+I+R+SG    +  + I K K    + +S    +G    LD  
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAIEKVDRIFKGKD-LTQVSSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + IE ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETLAHIEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLIVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQGIDMERVTDLAVGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  R +  A    E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGRTINDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L  A   LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|229170187|ref|ZP_04297873.1| tRNA modification GTPase mnmE [Bacillus cereus AH621]
 gi|228613288|gb|EEK70427.1| tRNA modification GTPase mnmE [Bacillus cereus AH621]
          Length = 458

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 152/459 (33%), Positives = 255/459 (55%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LD-G 58
           E +TI A+ST     AI+I+R+SG    +  + I K K    + +S    +G    LD  
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAIEKVDRIFKGKD-LTQVSSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + IE ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETLAHIEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLIVVNYSEALTNEDEDLFHAVQGKDFIVIVNKTDLPQEIDMERVTDLAVGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  R +  A    E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGRTINDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L  A   LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|281418695|ref|ZP_06249714.1| tRNA modification GTPase TrmE [Clostridium thermocellum JW20]
 gi|281407779|gb|EFB38038.1| tRNA modification GTPase TrmE [Clostridium thermocellum JW20]
          Length = 459

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 158/462 (34%), Positives = 249/462 (53%), Gaps = 28/462 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
           ++++TI A+ST      + IIR+SG   F++ E I + KK F    S    +G      +
Sbjct: 2   YKEDTIAAISTPHGAGGVGIIRISGDKAFEIAERIFRGKKDFKLIRSHTINYGKIINPEN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G +LD+ LL     P++FT ED  E + HGG+ V+  ILE L      RLA PGEF++RA
Sbjct: 62  GAVLDEVLLSKMEKPKTFTREDVVEINCHGGMVVLKNILE-LCIKEGARLAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLI+S+T    + ++  + G+LS        KL  + + IE  +D
Sbjct: 121 FLNGRIDLSQAEAVIDLINSKTNESSKAAISQLEGKLSRKIKDARSKLIELLAHIEVTVD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D++  +   V  +I  +K  +   +   + G IIR G   VI+G  N GKSSL N
Sbjct: 181 YPEH-DIEEITGNMVYEEIGKIKEKLCDIVKSFERGRIIREGIDAVIIGKPNVGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L+ K  AIVTDIPGTTRD++   +++ G  ++I DTAGIRET+D+VEK G+++T   ++
Sbjct: 240 ELSGKSKAIVTDIPGTTRDIIEEYININGIPLRIIDTAGIRETEDVVEKIGVEKTHRAID 299

Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKS--------DLYS-TYTEEYDHLI----- 343
            ADL++++  I++K+ +    N     +G K         DL       E + L+     
Sbjct: 300 EADLVIMM--IDAKRGMDEDDNRILTMLGDKKLIILINKIDLVDEKQINEIESLLKGRKC 357

Query: 344 ---SSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLN-EK 398
              S   G G+ EL N I  +       +   I  ++ RH   +   +  +E A  + + 
Sbjct: 358 IRTSVKEGTGISELENAITELFVQGEVSVNEEILLTNIRHKNLIDMAISSIEKAMESIDG 417

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LD+++ ++  A+  LG+ITG    E ++  IFSKFC+GK
Sbjct: 418 SMPLDLVSIDITDAADYLGQITGESVSEDVMHEIFSKFCLGK 459


>gi|125974850|ref|YP_001038760.1| tRNA modification GTPase TrmE [Clostridium thermocellum ATCC 27405]
 gi|256003893|ref|ZP_05428880.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 2360]
 gi|205829145|sp|A3DHY8|MNME_CLOTH RecName: Full=tRNA modification GTPase mnmE
 gi|125715075|gb|ABN53567.1| tRNA modification GTPase trmE [Clostridium thermocellum ATCC 27405]
 gi|255992231|gb|EEU02326.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 2360]
 gi|316941972|gb|ADU76006.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 1313]
          Length = 459

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 158/462 (34%), Positives = 249/462 (53%), Gaps = 28/462 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
           ++++TI A+ST      + IIR+SG   F++ E I + KK F    S    +G      +
Sbjct: 2   YKEDTIAAISTPHGAGGVGIIRISGDKAFEIAERIFRGKKDFKLIRSHTINYGKIVNPEN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G +LD+ LL     P++FT ED  E + HGG+ V+  ILE L      RLA PGEF++RA
Sbjct: 62  GAVLDEVLLSKMEKPKTFTREDVVEINCHGGMVVLKNILE-LCIKEGARLAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLI+S+T    + ++  + G+LS        KL  + + IE  +D
Sbjct: 121 FLNGRIDLSQAEAVIDLINSKTNESSKAAISQLEGKLSRKIKDARSKLIELLAHIEVTVD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D++  +   V  +I  +K  +   +   + G IIR G   VI+G  N GKSSL N
Sbjct: 181 YPEH-DIEEITGNMVYEEIGKIKEKLCDIVKSFERGRIIREGIDAVIIGKPNVGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L+ K  AIVTDIPGTTRD++   +++ G  ++I DTAGIRET+D+VEK G+++T   ++
Sbjct: 240 ELSGKSKAIVTDIPGTTRDIIEEYININGIPLRIIDTAGIRETEDVVEKIGVEKTHRAID 299

Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKS--------DLYS-TYTEEYDHLI----- 343
            ADL++++  I++K+ +    N     +G K         DL       E + L+     
Sbjct: 300 EADLVIMM--IDAKRGMDEDDNRILTMLGDKKLIILINKIDLVDEKQINEIESLLKGRKC 357

Query: 344 ---SSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLN-EK 398
              S   G G+ EL N I  +       +   I  ++ RH   +   +  +E A  + + 
Sbjct: 358 IRTSVKEGTGISELENAITELFVQGEVSVNEEILLTNIRHKNLIDMAISSIEKAMESIDG 417

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LD+++ ++  A+  LG+ITG    E ++  IFSKFC+GK
Sbjct: 418 SMPLDLVSIDITDAADYLGQITGESVSEDVMHEIFSKFCLGK 459


>gi|256420475|ref|YP_003121128.1| tRNA modification GTPase TrmE [Chitinophaga pinensis DSM 2588]
 gi|256035383|gb|ACU58927.1| tRNA modification GTPase TrmE [Chitinophaga pinensis DSM 2588]
          Length = 461

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 144/456 (31%), Positives = 256/456 (56%), Gaps = 26/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--DGRILDK 63
           +TI A++T     AI++IRL+G     +C  +   K    +     +F  +   GR +D+
Sbjct: 11  DTIVALATAPGIGAIAVIRLNGTKAIDICNSLFPAKDLHQQAGHTLHFGSIVDRGRTIDE 70

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++ ++ +P S+TGE+  E   HG   +   I++        R+A PGE++ RAF NGK+
Sbjct: 71  VVVSLYKAPRSYTGEEIVEISCHGSPYIQQQIIDACIH-AGARMAKPGEYTLRAFLNGKL 129

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AES+ADLI+S +    + +M+ M G  S       ++L    + IE +LDFS+E D
Sbjct: 130 DLTQAESVADLIASNSAASHQTAMQQMRGGFSKELYSLREQLISFSALIELELDFSQE-D 188

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           V+ F+ +  L  ++   N++  H+    ++G +I+NG    I+G  NAGKS+L N L  +
Sbjct: 189 VE-FADRTQLYRLINEANEVVQHLVDSFRMGNVIKNGVNTAIVGKPNAGKSTLLNTLLNE 247

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +   L+++G L ++ DTAGIRE+ D++E  G+++T  ++  A ++
Sbjct: 248 NRAIVSDIAGTTRDTIEEVLNIQGVLFRLIDTAGIRESADVIESIGVQKTMEKIREAGVV 307

Query: 303 LLLKEIN--------SKKEISFPKNIDFIFIGTKSDL--YSTYTEEYDHL-----ISSFT 347
           L L ++N        ++ +    + I+++ IG K+D+   +   E++  +     IS+  
Sbjct: 308 LYLFDVNETSLSELQAQVDTFVNEGINYLLIGNKTDINGLAAMQEKFATVEGILYISAKQ 367

Query: 348 GEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDI 404
            E ++EL ++ ++ ++S        +I ++ RH   L + ++ L+     L+ +  G D+
Sbjct: 368 HEHIQELKDRLVQKVMSGDINT-EDTIVTNARHYAALQEVLKALQDVRFGLDSQLPG-DL 425

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ ++R     LG+ITG +  E  LD IFSKFCIGK
Sbjct: 426 LSLDIRRCLHYLGEITGQITNEDQLDFIFSKFCIGK 461


>gi|88809840|ref|ZP_01125346.1| tRNA modification GTPase [Synechococcus sp. WH 7805]
 gi|88786224|gb|EAR17385.1| tRNA modification GTPase [Synechococcus sp. WH 7805]
          Length = 460

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 146/445 (32%), Positives = 237/445 (53%), Gaps = 33/445 (7%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG------LDGRILDKGLLIVFPSPE 73
           I++IRLSGP      + + +     P + S    +G       D RI D+ L+++  +P 
Sbjct: 25  IAVIRLSGPQAQSAVKAVTRIPGLQPWE-SHHVLYGHVLAAESDERI-DEVLVLLMLAPR 82

Query: 74  SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133
           SFTGED  E H HGG+  V  +L  +   P +R A PGEFS+RA  NG++DL  AE+++D
Sbjct: 83  SFTGEDVVEIHCHGGVIAVQRVLARVLDQPGVRRALPGEFSQRAVLNGRLDLTRAEAISD 142

Query: 134 LISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           L+++ ++   +L+M G+ G     +++L  + +D+L+ +    EA +DF  EED+     
Sbjct: 143 LVAARSQRAAQLAMAGVDGGIQKRITALRERLLDQLSEL----EARVDF--EEDLPPLDG 196

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
             +L ++  ++  +   +  G++G  +R G ++ ++G  N GKSSL N L++++ AIVTD
Sbjct: 197 SALLEELQMVRCQLQQLVEDGQVGAALRQGLRVALVGRPNVGKSSLLNRLSRRERAIVTD 256

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI- 308
           +PGTTRD+L  ++ LEG  + + DTAGIR T D VE+ GI R+   + +ADL+LLL ++ 
Sbjct: 257 LPGTTRDLLESEIVLEGVPITLLDTAGIRATTDAVEQLGIARSHDALASADLVLLLFDLS 316

Query: 309 ------NSKKEISFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLEELIN 356
                 +       P  +  + +G K DL  +       +   D  +S+ TG G  EL+ 
Sbjct: 317 VGWTPDDEALRQRVPDAVPHLLVGNKVDLAGSDALARLSSAAVDVCLSANTGAGEAELVQ 376

Query: 357 K-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
             +K   +     L  S+ + ++              A +       D    +LR A  S
Sbjct: 377 AMLKRCGALTDGSLLLSL-NQRQADLAQQAADALARSAQVAADGLPWDFWTIDLRQAIRS 435

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG+ITG    E +LD IFS+FCIGK
Sbjct: 436 LGEITGEELTESVLDRIFSRFCIGK 460


>gi|255263117|ref|ZP_05342459.1| tRNA modification GTPase TrmE [Thalassiobium sp. R2A62]
 gi|255105452|gb|EET48126.1| tRNA modification GTPase TrmE [Thalassiobium sp. R2A62]
          Length = 428

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 140/439 (31%), Positives = 230/439 (52%), Gaps = 18/439 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA++T    + ++IIR+SG   F     +    + + +  +LR     +G +LD+ L+
Sbjct: 3   TIFALATAHGKAGVAIIRISGADAFSGVSKLVGSLQ-YEKSMALRAVRTPEGDLLDQALV 61

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F +  SFTGED  E  +HG  A+   +L +L+ +     A  GEF+RRA ENG +DL 
Sbjct: 62  LTFVAGASFTGEDVVELQLHGSPAITQAVLRQLSLLEGFVAAEAGEFTRRALENGCLDLT 121

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           + E L+DLI +ETE QR  ++    G L +    W  +L    S +EA +DF+ +EDV  
Sbjct: 122 QVEGLSDLIEAETEAQRIQAIRVFDGALGAKADVWRQRLIRAVSLVEATIDFA-DEDVPT 180

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
               EV   +  ++ ++S   +  ++ E +R+G+++ I+G  N GKS+L NA+A +D AI
Sbjct: 181 DVMPEVKELLEAVRKELSLEAAGVEIAERVRDGFEVAIVGAPNVGKSTLLNAIAGRDAAI 240

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
            ++  GTTRD++ + +DL G  V   DTAG+ + D  VE+ GI+R       ADL ++L 
Sbjct: 241 TSEYAGTTRDIIEVKIDLGGLPVTFLDTAGLHDADSAVEQIGIRRALDRAAQADLRVVLS 300

Query: 307 EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                 EI   +  + +        +S    + +  IS  +G G+ EL+ ++ + L ++ 
Sbjct: 301 IDGKLPEIELLEGDEALVA------HSDQGADPNKEISGLSGFGVSELLARVANKLGHRA 354

Query: 367 KKLPFSIPSHKR-----HLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
                +I    R      L  L+     +E+    E     +I++EN+R    SL  + G
Sbjct: 355 SGAGLAIKERHRVALIDGLNSLTAVTDMIEVGDYLE-----EILSENIRDGIKSLDALVG 409

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            +DVE +L  IF  FCIGK
Sbjct: 410 RMDVEDVLAEIFLSFCIGK 428


>gi|196232691|ref|ZP_03131542.1| tRNA modification GTPase TrmE [Chthoniobacter flavus Ellin428]
 gi|196223151|gb|EDY17670.1| tRNA modification GTPase TrmE [Chthoniobacter flavus Ellin428]
          Length = 445

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 237/443 (53%), Gaps = 12/443 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDGRIL 61
           +TI A+ST     AI+++RLSGP    +   I + KKP     PR       +    R L
Sbjct: 7   DTIAAISTPFGEGAIALLRLSGPRAAGIAGAIFRGKKPVTELVPRVQHYGAVYDAKKRKL 66

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  LL VF  P S+TGED  E   HGG+ V   IL  L K    R A PGEF++RA+ + 
Sbjct: 67  DDVLLTVFRGPHSYTGEDVVEISCHGGVLVSRRILGALLK-SGARSAEPGEFTQRAYLHH 125

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ DLIS++T++  R + E + G L        + +  + + +EA +DF +E
Sbjct: 126 KMDLTQAEAVMDLISAQTDLAMRAATEQLEGRLGECIRALRETIIELLANVEAYIDFPDE 185

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D+   S  ++L  +   + D+ + ++    G+++R G + VI G  N GKSSL N L  
Sbjct: 186 -DIDPDSGVDLLAKMDAARADLEALLATADRGKVLREGVRTVIYGAPNVGKSSLLNLLLG 244

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            + AIV+  PGTTRDV+   ++L G  +++ DTAG+R +DD +E+EG+KRT+ E+  ADL
Sbjct: 245 HERAIVSPRPGTTRDVIEETINLGGLPIRLIDTAGVRVSDDELEQEGMKRTWQELARADL 304

Query: 302 ILLLKEINSKKEISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLEELINKIK 359
            L +   ++ +  S   N   + +  K+DL  +  + +     IS    +G++ L   I 
Sbjct: 305 ALHV--FDASEPPSEEANGTVLTVLNKTDLGEHPGWRKIDAVRISCLKNKGIDALTKAIV 362

Query: 360 S-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLG 417
           + I         +S+  + RH   L +   ++E A      +   + +AE LR A  ++G
Sbjct: 363 ARIAGGSTTHRDWSLAINARHADCLGRARGFIEAARGALTGEMSPEFVAEELRGALDAVG 422

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
            + G  D E++L  IFS FCIGK
Sbjct: 423 DVVGKADSEEILGKIFSTFCIGK 445


>gi|229164435|ref|ZP_04292363.1| tRNA modification GTPase mnmE [Bacillus cereus R309803]
 gi|228619040|gb|EEK75938.1| tRNA modification GTPase mnmE [Bacillus cereus R309803]
          Length = 458

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 255/459 (55%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +    I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+   ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++    +++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATYVRTEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELSAGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL N I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELENAIAELFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|157737854|ref|YP_001490538.1| tRNA modification GTPase TrmE [Arcobacter butzleri RM4018]
 gi|205829054|sp|A8EV95|MNME_ARCB4 RecName: Full=tRNA modification GTPase mnmE
 gi|157699708|gb|ABV67868.1| tRNA modification GTPase [Arcobacter butzleri RM4018]
          Length = 446

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 152/452 (33%), Positives = 248/452 (54%), Gaps = 23/452 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           E +TI A++T     +ISI+R+SG    ++   I KK     R A+L   +     I+D+
Sbjct: 3   ENDTIVAIATANGIGSISIVRVSGAKALEIATKISKKNNFKARLATLSTIYDSKNEIIDE 62

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L+I F SP SFTGED  EF  HGG+A+ N I++E+      RLANPGEFS+RAF N KI
Sbjct: 63  ALVIYFKSPFSFTGEDVVEFQCHGGVAISNMIVDEVLN-AGARLANPGEFSKRAFFNNKI 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE+++ +I + +    +L    + GEL++   +  + L  + ++ E  +D++EE D
Sbjct: 122 DLTKAEAISKIIEARSADAVKLLARQLKGELTNFVDEIREDLLFMLAYTEVSIDYAEE-D 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +     +++ N +  +   +S+ +   +  E +  G+K+ I+G  N GKSSL N L   D
Sbjct: 181 LPTDIYEQIENKMQKISLKLSNTLEASRRREGMIEGFKVAIIGKPNVGKSSLLNKLLNFD 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AI++DI GTTRD +   + +  +++KI DTAGIR+  D++EK GI+++   +  AD+++
Sbjct: 241 RAIISDIAGTTRDTIEESVRIGTHIIKIVDTAGIRDASDVIEKIGIEKSIQAINEADIVI 300

Query: 304 LLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEY-DHLISSFTGE 349
            L + NSK             KE S  K    I +  KSDL + + +   D  I   T E
Sbjct: 301 ALFD-NSKICDDEDKKILDLIKENSDKK---VIVVLNKSDLQNQFDKNVLDSFIELSTKE 356

Query: 350 GLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            +  LI +++ IL SN F     ++ S KR +  +  T+  + +A    K   L+  A  
Sbjct: 357 DINPLIKELELILDSNTFGD-DITLVS-KRQVLAVENTLYNIGLAKEPLKSGELEFFAHF 414

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  A   +  IT   D +++LD++F +FC+GK
Sbjct: 415 ITQALEDISSITRPYDNDEMLDVMFGEFCLGK 446


>gi|303230675|ref|ZP_07317425.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-049-V-Sch6]
 gi|302514730|gb|EFL56722.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-049-V-Sch6]
          Length = 461

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 256/460 (55%), Gaps = 28/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58
           +TI A++T      + IIR+SG   F +   + K     P    +  +++Y   +D    
Sbjct: 5   DTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSAGTVPLMDRQNRTIQYGTIVDPATN 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ L+++   P S+T ED  E   HGGI  V  IL+ L    ++R+A  GEF++RAF
Sbjct: 65  KTVDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLVNH-DVRMAEAGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I ++TE    L++  + G +SS      ++L  + + +E  +D+
Sbjct: 124 MNGRIDLTQAEAIIDIIEAKTEDSLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTIDY 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            EE D+++ +S+EV   +  +   +   +S    G +IR+G   VI+G  NAGKSSL NA
Sbjct: 184 PEE-DIEDVTSQEVREQLEPILKAVDELLSTANTGRLIRDGITTVIVGRPNAGKSSLMNA 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDIPGTTRD +   + +EG  +++ DTAGIR+T D VE  G++R    +  
Sbjct: 243 LLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYINK 302

Query: 299 ADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEEY--DH-------LI 343
           AD++L + + +   + +EI    ++   + I +  KSD+    T+E   +H        I
Sbjct: 303 ADIVLCVIDGSTPLTPEEIEILTSVSGLNTIVLLNKSDVAQVVTDETIKEHGTFTAIERI 362

Query: 344 SSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           S+  GEG   L   ++ ++   + K+   ++ S+ RH+  + Q    +E A L+  D G+
Sbjct: 363 SAKEGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEQA-LSSIDMGM 421

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D +A +LR A   LG ITG    E ++D +F++FC+GK
Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFNRFCLGK 461


>gi|167041019|ref|YP_001664004.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X514]
 gi|205829185|sp|B0K5N4|MNME_THEPX RecName: Full=tRNA modification GTPase mnmE
 gi|166855259|gb|ABY93668.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X514]
          Length = 460

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 171/464 (36%), Positives = 244/464 (52%), Gaps = 36/464 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGLDG 58
           +TI A+ST    + I I+RLSG       E I K  KP+  K        +L Y   +D 
Sbjct: 4   DTIAAISTFPGEAGIGIVRLSGDDAL---EIISKIFKPYKSKDIKKVKSHTLHYGHIVDP 60

Query: 59  R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++
Sbjct: 61  ETEEVYDEVLVSIMEKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I ++T +  R + + + G + S   +  DK+  +   + A 
Sbjct: 120 RAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLLVHLLAL 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF EE DV+    KE+L     +  DI   I+  + G IIR G K  I+G  N GKSSL
Sbjct: 180 IDFPEE-DVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   
Sbjct: 239 LNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVTKSKEV 298

Query: 296 VENADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL---- 342
           +  ADLIL        L KE     +I   KNI  IF+  K DL     E E   L    
Sbjct: 299 LAEADLILFVLDASRELTKEDYEIFDILTGKNI--IFVLNKIDLPKKIDEKELKDLTKDG 356

Query: 343 ----ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLN 396
               +S+    GLEEL N I + +           I  + RH   L    +Y+E      
Sbjct: 357 IIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALINAKKYMESCVEAI 416

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E     D+I  +L  A   LGKITG    E L++ IF +FC+GK
Sbjct: 417 EGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 460


>gi|304405894|ref|ZP_07387552.1| tRNA modification GTPase TrmE [Paenibacillus curdlanolyticus YK9]
 gi|304345137|gb|EFM10973.1| tRNA modification GTPase TrmE [Paenibacillus curdlanolyticus YK9]
          Length = 461

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 151/467 (32%), Positives = 245/467 (52%), Gaps = 33/467 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           MN   +TI A++T     +I+IIR+SGP   +    + + K+ F    S    +G     
Sbjct: 1   MNMTHDTIAAIATAVGEGSIAIIRVSGPDAIERTADVFRSKEDFRSAESHTVHYGHIVDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L  + +++ L+ V   P SFTGED  E   HGG+     +L+ + K P +R+A PGEF++
Sbjct: 61  LTNQRVEEVLVTVMRGPRSFTGEDVVEIGTHGGVIAAKNVLQLVLKQPGIRVAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI S+++   +++M+   G LS         +  + + +E +
Sbjct: 121 RAFLNGRIDLTQAEAVMDLIRSKSDRAFQVAMKQSEGSLSKRIADLRQTIIEVIAHVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E  DV+  +S  +          +   +     G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEH-DVEELTSAFIREHCGVALEGVKRLLKTASEGKILREGIVTAIVGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL + + AIVTDIPGTTRDV+   + + G  +++ DTAGIRET D+VE+ G++R+   
Sbjct: 240 LNALTQSNKAIVTDIPGTTRDVIEEFVTVNGIPLRLLDTAGIRETADVVERIGVERSNSA 299

Query: 296 VENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTY-TEEYDHLISSF 346
           +E ADLIL +   N K         E    + +  IF   K+DL     T E + +   F
Sbjct: 300 LEEADLILYVLNRNEKLHDDDRQLMEKLAGRQVVVIF--NKTDLPQQLETAEVEQV---F 354

Query: 347 TGEGL-------EELINKIKSILSNKF-----KKLPFSIPSHKRHLYHLSQTVR-YLEMA 393
             E +       EE I++++ ++S  F     +    +  ++ RH+  L +  +  L+  
Sbjct: 355 PAERIVPMSVLGEEGIDRLEEVISELFFEGRIESNDLTYVTNVRHISLLERAKQSLLDAI 414

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              E    +DI+  +++ A   LG++ G    E LLD IFS+FC+GK
Sbjct: 415 EATEIGVPIDIVQIDIQQAWELLGEVIGDSAGESLLDQIFSQFCLGK 461


>gi|220930844|ref|YP_002507753.1| tRNA modification GTPase TrmE [Clostridium cellulolyticum H10]
 gi|220001172|gb|ACL77773.1| tRNA modification GTPase TrmE [Clostridium cellulolyticum H10]
          Length = 460

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 160/464 (34%), Positives = 253/464 (54%), Gaps = 35/464 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGR--- 59
           ++TI A+ST      I +IR+SG   F     I +  K      S    +G  +D +   
Sbjct: 4   EDTIAALSTPYGTGGIGVIRISGGQAFDTANKIFRSSKTIEEIHSHTVTYGKIVDPKLND 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ LL+    P +FT ED  E H HGGI VVN +LE + K   +R A PGEF++RAF 
Sbjct: 64  VVDEVLLLKMCKPNTFTREDVIEIHCHGGIVVVNRVLELIFK-NGVRPAQPGEFTKRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI+S+T    + ++  + G LS       + L  + + IE  +D+ 
Sbjct: 123 NGRIDLSQAEAIIDLINSKTVESSKAAVSHLEGRLSLRLKSIREVLVGLLAHIEVTVDYP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  D++  + + VL +++ +K ++ +     + G+I+R G  IVI G  N GKSSL N L
Sbjct: 183 EH-DIEEITGENVLENLIKIKEELITLAGTFERGKILREGIDIVIAGKPNVGKSSLLNQL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           +    AIVTDIPGTTRD++   ++++G   KI DTAGIR T+D+VE  G+ R +  +E+A
Sbjct: 242 SGSTKAIVTDIPGTTRDIIEEYVNIKGIPAKIIDTAGIRSTEDVVETIGVNRAYEAIESA 301

Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
           DLI+               +LK I +KK +      D +   + S +    +E    L +
Sbjct: 302 DLIIAVLSADTGVTEEDIQILKMIKNKKSLILINKTDLVEKNSISKIKQQLSECDIVLEA 361

Query: 345 SFTGE-GLEELINKIKSILSNKFKKLPFS-----IPSHKRHLYHLSQTVRYLEMASLNEK 398
           S   + G+EEL    ++ +S  F K   S     + ++ RH Y + + +  +E A LN  
Sbjct: 362 SVIKDVGIEEL----ETAISGLFIKGDISSNNEVLLTNARHKYLVDRAINDIEQA-LNSF 416

Query: 399 DCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + G  LD++  +++  + S+G+ITG    E +L  IFS+FCIGK
Sbjct: 417 ETGMPLDMVTIDIKSCADSIGEITGESIDEAVLHNIFSRFCIGK 460


>gi|255033904|ref|YP_003084525.1| tRNA modification GTPase TrmE [Dyadobacter fermentans DSM 18053]
 gi|254946660|gb|ACT91360.1| tRNA modification GTPase TrmE [Dyadobacter fermentans DSM 18053]
          Length = 455

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 252/455 (55%), Gaps = 25/455 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FGLDGRI 60
           ++E I A++T +   AI +IR+SG     +   + K K     ++   +F   F  D  I
Sbjct: 8   QQEVICALATPSGVGAIGVIRVSGLGSIAMVNSVFKGKNLENAESHTVHFGTIFSGD-EI 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ VF +P SFT EDS E   HG   ++  IL+ L  +   R+A PGEF++RAF N
Sbjct: 67  IDEVLVTVFKTPRSFTKEDSVEISCHGSDYIIRQILKVLI-LKGARIAKPGEFTQRAFLN 125

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+ DL++AE++ADLI+++++   + ++  + G  S        +L H  S IE +LDF E
Sbjct: 126 GQFDLVQAEAVADLIAADSQASHKTALNQLRGGFSKKLASLRAELIHFASLIELELDFGE 185

Query: 181 EEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E DV+ F+ ++ L  ++  L + I   IS    G  I+ G  + I+G  N GKS+L NAL
Sbjct: 186 E-DVE-FAQRDDLRRLIDALLSTIEPLISSFDFGNAIKEGVPVAIIGSPNVGKSTLLNAL 243

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVT I GTTRDV+   + L+G   +  DTAGIRET D+VE  GI+R+   ++ A
Sbjct: 244 LNEEKAIVTSIAGTTRDVIEDTIVLDGLKFRFIDTAGIRETTDVVESIGIERSKAAMDKA 303

Query: 300 DLILLL----KEINSKKEIS--FPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           D+++ L    + +   + ++   P   + +F+  K+D+      E          IS+ T
Sbjct: 304 DIVIFLFDSAETLADNRALAALLPAGKEVLFVLNKTDINPLLASELSGDASDIIPISAHT 363

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DII 405
            + L  L +K+ S++    +    ++ ++ RH  HL +T   L    LN    G+  D +
Sbjct: 364 QQNLPVLTSKLVSLVHG--QAAGDTVVTNLRHYEHLMKTSDSLTDV-LNGLSLGVTGDFL 420

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A+++RLA   LG+ITG +  + LL+ IFS+FCIGK
Sbjct: 421 AQDIRLALHHLGEITGTIATDDLLENIFSRFCIGK 455


>gi|304318133|ref|YP_003853278.1| tRNA modification GTPase TrmE [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779635|gb|ADL70194.1| tRNA modification GTPase TrmE [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 458

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 161/460 (35%), Positives = 249/460 (54%), Gaps = 30/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRYFFGLD---G 58
           +TI A+ST    + ISIIR+SG    ++   I K K+    KA    ++ Y F  D    
Sbjct: 4   DTIAAISTAVGEAGISIIRISGRDAIKIVSGIFKSKRNIDLKAVKSHTVHYGFIYDSESN 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            + D+ L+ V  SP ++T ED  E + HGG      ILE + K    RLA PGEF++RAF
Sbjct: 64  EVYDEVLVNVMKSPHTYTKEDIVEINCHGGYVPAKRILELVLK-NGARLAEPGEFTKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+ID+ +AE++ D+I S+T +  + ++  +SG +     +  + L  + + I A +DF
Sbjct: 123 INGRIDMSQAEAVIDIIRSKTALSNKYAVMQLSGSVKDKINEIKNDLVALIAHIFALMDF 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            +E DV+ F+  E+++ I      I   +   + G IIR G   VI+G  N GKSSL NA
Sbjct: 183 PDE-DVEIFNDSELIDGIKNAIRKIDELLDSSEKGRIIREGLNTVIIGKPNVGKSSLLNA 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVTDIPGTTRD++   L+++G  +K+ DTAGIR+TD++VEK G++R+   +  
Sbjct: 242 LLNENRAIVTDIPGTTRDIIEEYLNIKGIPIKLIDTAGIRDTDELVEKIGVERSKEAINK 301

Query: 299 ADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
           ADLI+               +L+ I+ K  +     ID   +    ++     E Y  L 
Sbjct: 302 ADLIIFVFDNSRPLEKEDYEILRIIDDKNVLYVLNKIDLPSMIDLDEIRRISNENYISL- 360

Query: 344 SSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           SS T EG + L N + + ++ N      F + ++ RH   L +    L M+ LN  + GL
Sbjct: 361 SSVTKEGFDALENTVYNMVMENGLSNNEF-LLTNMRHKDALLKAKENL-MSCLNTIERGL 418

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D ++ +L  A  +LG ITG    E L++ IF +FC+GK
Sbjct: 419 TEDFVSIDLNAAIDNLGLITGETANEDLINEIFERFCVGK 458


>gi|320117061|ref|YP_004187220.1| tRNA modification GTPase TrmE [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|319930152|gb|ADV80837.1| tRNA modification GTPase TrmE [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 462

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 171/464 (36%), Positives = 244/464 (52%), Gaps = 36/464 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGLDG 58
           +TI A+ST    + I I+RLSG       E I K  KP+  K        +L Y   +D 
Sbjct: 6   DTIAAISTFPGEAGIGIVRLSGDDAL---EIISKIFKPYKSKDIKKVKSHTLHYGHIVDP 62

Query: 59  R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++
Sbjct: 63  ETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTK 121

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I ++T +  R + + + G + S   +  DK+  +   + A 
Sbjct: 122 RAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLLVHLLAL 181

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF EE DV+    KE+L     +  DI   I+  + G IIR G K  I+G  N GKSSL
Sbjct: 182 IDFPEE-DVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   
Sbjct: 241 LNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVTKSKEV 300

Query: 296 VENADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL---- 342
           +  ADLIL        L KE     +I   KNI  IF+  K DL     E E   L    
Sbjct: 301 LAEADLILFVLDASRELTKEDYEIFDILTGKNI--IFVLNKIDLPKKIDEKELKDLTKDG 358

Query: 343 ----ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLN 396
               +S+    GLEEL N I + +           I  + RH   L    +Y+E      
Sbjct: 359 IIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALINAKKYMESCVEAI 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E     D+I  +L  A   LGKITG    E L++ IF +FC+GK
Sbjct: 419 EGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 462


>gi|229065143|ref|ZP_04200436.1| tRNA modification GTPase mnmE [Bacillus cereus AH603]
 gi|228716172|gb|EEL67891.1| tRNA modification GTPase mnmE [Bacillus cereus AH603]
          Length = 458

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 152/459 (33%), Positives = 254/459 (55%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LD-G 58
           E +TI A+ST     AI+I+R+SG    +  + I K K    + +S    +G    LD  
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAIEKVDRIFKGKD-LTQVSSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L      RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGARLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + IE ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETLAHIEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLIVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQEIDMERVTDLAVGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  R +  A    E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGRTINDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L  A   LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|282848771|ref|ZP_06258166.1| tRNA modification GTPase TrmE [Veillonella parvula ATCC 17745]
 gi|282581557|gb|EFB86945.1| tRNA modification GTPase TrmE [Veillonella parvula ATCC 17745]
          Length = 461

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 256/460 (55%), Gaps = 28/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58
           +TI A++T      + IIR+SG   F +   + K     P    +  +++Y   +D    
Sbjct: 5   DTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSVGTVPLMDRQNRTIQYGTIVDPATN 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ L+++   P S+T ED  E   HGGI  V  IL+ L    N+R+A  GEF++RAF
Sbjct: 65  KTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLVNH-NVRMAEAGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I ++TE    L++  + G +SS      ++L  + + +E  +D+
Sbjct: 124 MNGRIDLTQAEAIIDIIEAKTEDSLSLAVAQLDGTVSSFVKDVREQLIAMIAHLEVTIDY 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            EE D+++ +S+EV   +  +   +   +S    G +IR+G   VI+G  NAGKSSL NA
Sbjct: 184 PEE-DIEDVTSQEVREQLEPILKAMEDLLSTANTGRLIRDGITTVIVGRPNAGKSSLMNA 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDIPGTTRD +   + ++G  +++ DTAGIR+T D VE  G++R    +  
Sbjct: 243 LLRENRAIVTDIPGTTRDSIEEYMTVKGISLRLIDTAGIRDTQDTVEALGVERARDYINK 302

Query: 299 ADLILLLKEINS---KKEISFPKNI---DFIFIGTKSDLYSTYTEE--YDH-------LI 343
           AD++L + + ++    +EI    ++   + I +  KSD+    T+E   +H        I
Sbjct: 303 ADIVLCVIDGSTPLNPEEIEILTSVSGLNTIVLLNKSDVAQVVTDENIKEHGTFTAIERI 362

Query: 344 SSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           S+  GEG   L   ++ ++   + K+   ++ S+ RH+  + Q    +E A L+  D G+
Sbjct: 363 SAKEGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKVQVEQA-LSSIDMGM 421

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D +A +LR A   LG ITG    E ++D +FS+FC+GK
Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461


>gi|257866268|ref|ZP_05645921.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC30]
 gi|257873216|ref|ZP_05652869.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC10]
 gi|257800226|gb|EEV29254.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC30]
 gi|257807380|gb|EEV36202.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC10]
          Length = 481

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 153/463 (33%), Positives = 248/463 (53%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG     + + I +   K   +  S    +G    
Sbjct: 20  ITQEFDTIAAISTPPGEGAISIVRLSGEEAIAIADRIFQAGTKTLAQVPSHTIHYGHIID 79

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             + R++D+ +L V   P +FT ED  E + HGGI VVN +L+ L      RLA PGEF+
Sbjct: 80  PEENRLMDEVMLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFT 138

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS L      ++    + +E 
Sbjct: 139 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEV 198

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  ++  +L     +K  I + ++  + G+I+R G    I+G  N GKSS
Sbjct: 199 NIDYPEYDDVEELTTCLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSS 258

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVEK G++R+  
Sbjct: 259 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVEKIGVERSRK 318

Query: 295 EVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL--------YSTY-TEEY 339
            +  A+LILL+   +       K+ +        I +  K+DL         + Y  +E 
Sbjct: 319 ALAEAELILLVLNQSEGLTQEDKQLLELTAGSRRIILLNKTDLEPKLATAELAQYAADEP 378

Query: 340 DHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397
              +S  T EGL++L   I  +    K      S  S+ RH+  L   V+ L E+    E
Sbjct: 379 IFSVSVLTSEGLDQLEQAIADLFFGGKTTDKDASYLSNTRHIALLENAVQSLSEVIQGIE 438

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 439 AGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 481


>gi|300913770|ref|ZP_07131087.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X561]
 gi|307725544|ref|YP_003905295.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X513]
 gi|300890455|gb|EFK85600.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X561]
 gi|307582605|gb|ADN56004.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X513]
          Length = 462

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 171/464 (36%), Positives = 244/464 (52%), Gaps = 36/464 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGLDG 58
           +TI A+ST    + I I+RLSG       E I K  KP+  K        +L Y   +D 
Sbjct: 6   DTIAAISTFPGEAGIGIVRLSGDDAL---EIISKIFKPYKSKDIKKVKSHTLHYGHIVDP 62

Query: 59  R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++
Sbjct: 63  ETEEVYDEVLVSIMEKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTK 121

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I ++T +  R + + + G + S   +  DK+  +   + A 
Sbjct: 122 RAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLLVHLLAL 181

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF EE DV+    KE+L     +  DI   I+  + G IIR G K  I+G  N GKSSL
Sbjct: 182 IDFPEE-DVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   
Sbjct: 241 LNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVTKSKEV 300

Query: 296 VENADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL---- 342
           +  ADLIL        L KE     +I   KNI  IF+  K DL     E E   L    
Sbjct: 301 LAEADLILFVLDASRELTKEDYEIFDILTGKNI--IFVLNKIDLPKKIDEKELKDLTKDG 358

Query: 343 ----ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLN 396
               +S+    GLEEL N I + +           I  + RH   L    +Y+E      
Sbjct: 359 IIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALINAKKYMESCVEAI 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E     D+I  +L  A   LGKITG    E L++ IF +FC+GK
Sbjct: 419 EGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 462


>gi|167038669|ref|YP_001666247.1| tRNA modification GTPase TrmE [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|205829184|sp|B0K8H9|MNME_THEP3 RecName: Full=tRNA modification GTPase mnmE
 gi|166857503|gb|ABY95911.1| tRNA modification GTPase TrmE [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
          Length = 460

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 171/464 (36%), Positives = 244/464 (52%), Gaps = 36/464 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGLDG 58
           +TI A+ST    + I I+RLSG       E I K  KP+  K        +L Y   +D 
Sbjct: 4   DTIAAISTFPGEAGIGIVRLSGDDAL---EIISKIFKPYKSKDIKKVKSHTLHYGHIVDP 60

Query: 59  R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++
Sbjct: 61  ETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I ++T +  R + + + G + S   +  DK+  +   + A 
Sbjct: 120 RAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLLVHLLAL 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF EE DV+    KE+L     +  DI   I+  + G IIR G K  I+G  N GKSSL
Sbjct: 180 IDFPEE-DVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   
Sbjct: 239 LNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVTKSKEV 298

Query: 296 VENADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL---- 342
           +  ADLIL        L KE     +I   KNI  IF+  K DL     E E   L    
Sbjct: 299 LAEADLILFVLDASRELTKEDYEIFDILTGKNI--IFVLNKIDLPKKIDEKELKDLTKDG 356

Query: 343 ----ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLN 396
               +S+    GLEEL N I + +           I  + RH   L    +Y+E      
Sbjct: 357 IIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALINAKKYMESCVEAI 416

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E     D+I  +L  A   LGKITG    E L++ IF +FC+GK
Sbjct: 417 EGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 460


>gi|116514958|ref|YP_802587.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|122285646|sp|Q058F5|MNME_BUCCC RecName: Full=tRNA modification GTPase mnmE
 gi|116256812|gb|ABJ90494.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 454

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 146/413 (35%), Positives = 237/413 (57%), Gaps = 20/413 (4%)

Query: 46  RKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL 105
           R A    F+ +   +LD+G+ + F +P+SFTGE+  EFH HG   +++ +++ +  + N+
Sbjct: 44  RFAYFSSFYDVKNNLLDQGIALFFLAPKSFTGENILEFHSHGNPIILDLLIKNILTIKNV 103

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           R+ANPGEFS+RAF N KIDL++AE++ D+I++E+ +  + ++  + G  S    + +  L
Sbjct: 104 RIANPGEFSKRAFLNNKIDLVQAEAINDIINAESHLSVKAALSSLRGTFSKKINKILFNL 163

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
             I S IEA ++F EE +  N   K +   + F+   I++ + +     I  N  KIVI 
Sbjct: 164 KDIYSEIEAIINFPEELNDLNI-QKNIKKKLSFIIKMITNLLDETHKNYIFSNTIKIVIA 222

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  N GKSSL N L+K+ V+IVT+IPGTTRDV+  ++   G   +  DTAG++++ DI+E
Sbjct: 223 GPPNVGKSSLLNFLSKEKVSIVTNIPGTTRDVIHKNIWFNGVCCEFLDTAGLQKSQDIIE 282

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEI--SFPKNI--------DFIFIGTKSDL---- 331
             GIK     +++ + I L+ ++  KK I  +F KNI        +  FI  K DL    
Sbjct: 283 VIGIKLAKKHIKSCNHIFLMFDVTKKKMINNNFIKNIVNNLKKNQNITFIFNKIDLINKK 342

Query: 332 --YSTYTEEYDHLISSFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
              S   ++++ +  S     G+E L NKI  I +     +  +  + KRH+  L +++ 
Sbjct: 343 PYISIIYKKFECIYLSLKKNIGIEYLKNKILEI-TTLHNNVESTFLAKKRHISALKKSLM 401

Query: 389 YLEMASLNE-KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           YL     N  K+  L+++++++RL+   L KITG  + E LLD IFSKFCIGK
Sbjct: 402 YLINGKRNWMKNLYLELLSDDIRLSIKYLLKITGKFNSEDLLDKIFSKFCIGK 454


>gi|268570122|ref|XP_002640697.1| Hypothetical protein CBG19762 [Caenorhabditis briggsae]
          Length = 439

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 151/454 (33%), Positives = 250/454 (55%), Gaps = 37/454 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+S+G LPSAI++ R+SGP    +   + ++K   P+       +    RI+D+ + 
Sbjct: 3   TIFALSSGTLPSAIAVFRVSGPQSLPILRQLSRRKVWTPKMMEFTKLYDSQRRIIDESMA 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP P++FTGED+AEF +HG  AV       L+++ N+R A  GEF+RRAF NGK+ + 
Sbjct: 63  VYFPGPKTFTGEDTAEFFLHGSQAVAQKFATCLSEIENVREAKRGEFTRRAFHNGKMSIS 122

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           E   L  LI S TE +RR +   M G   ++  +   KL  I S +   +DF E   ++ 
Sbjct: 123 EVRGLDRLIRSRTEKERRAAFGQMRGGTRAV--EIRKKLVEILSKLFVIIDFGEHVALEL 180

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            ++++ + +IL    +I+  I   +  E  + G +IV+ G  N+GKSS+ N LA  DVAI
Sbjct: 181 SAAQKDVAEIL---AEINRLILAWEGAERAQRGLEIVLYGRPNSGKSSILNQLAHDDVAI 237

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLL 305
           V++IPGTTRD L   + + G   +++DTAGIR  T+D++E EGI+R    +E+AD+I  +
Sbjct: 238 VSEIPGTTRDSLVTTIQINGIRCRLTDTAGIRPHTNDVIEAEGIRRAQRRLESADVICFV 297

Query: 306 KEINSK-----------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---HLISSF--TGE 349
            +  S+           K++  P++   + +  K+DL   Y E      H++SS   + E
Sbjct: 298 VDPESRSDDVANILEDVKKLKNPES-KVLIVKNKADLKLPYPEVSSSGIHVVSSHATSSE 356

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSH--KRHLYHLSQTVRYLEMASLNEK-DCGLDIIA 406
           G ++L   + S++     +  F + +   ++    L+ ++   + A + +  + GL+ IA
Sbjct: 357 GCQKLRETLGSLVDQLCPETNFLLDAELLRKCSDELTCSMLCQDAAIMCQHIEKGLEHIA 416

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E      ++ G +T     E +LD IFS+FCIGK
Sbjct: 417 E------LTQGTVT-----ESVLDGIFSQFCIGK 439


>gi|302306610|ref|NP_983009.3| ABR063Cp [Ashbya gossypii ATCC 10895]
 gi|299788599|gb|AAS50833.3| ABR063Cp [Ashbya gossypii ATCC 10895]
          Length = 493

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 157/479 (32%), Positives = 254/479 (53%), Gaps = 50/479 (10%)

Query: 7   TIFAVSTG-ALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLDGR----I 60
           TI+A+ST     SAI+++R+SG     V E +   K+ P PR+ASLR  +          
Sbjct: 20  TIYALSTPMGQKSAIAVVRVSGTHARLVYEKLTDSKRPPTPRRASLRNLYSPQSAPEKVF 79

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFS 114
           LD  L + F  P +FTGED  E HVHGG AVV G+L+ +  + +      +R A  GEFS
Sbjct: 80  LDSALTLFFEQPGTFTGEDILELHVHGGKAVVAGVLDAIGALHDESAGVQIRYAEAGEFS 139

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAF+NG+ DL E E + +LI +ETE QRR ++    G+   L+  W  ++    + + A
Sbjct: 140 RRAFQNGRFDLTEIEGIGELIDAETETQRRSAISSFRGQNRLLFAGWRQQIVDNIAQVAA 199

Query: 175 DLDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
            +DF ++ ++Q+  +  + V   +  L+ +++  + +     I+++G ++ +LG  NAGK
Sbjct: 200 IIDFGDDTEIQDIDAILEGVRCSVKALRREVADFVERVTRSTILQSGIRLSVLGAPNAGK 259

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKR 291
           SSL N + K D +IV+ IPGTTRD + + LD+ GY V ++DTAG+R  + D +E  GI R
Sbjct: 260 SSLVNCITKDDTSIVSSIPGTTRDAIDVPLDINGYKVILTDTAGVRAHSTDPIELIGIAR 319

Query: 292 TFLEVENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYSTYTEEYDH- 341
                  +D++LL+ +  +   +S                + I  KSDL      +Y   
Sbjct: 320 AQERTARSDIVLLVVDATAATPLSPALRSHLRDLTDKCRLVVI-NKSDLVPPSRLKYIQT 378

Query: 342 -------------LISSFTGEGLEELINKIKS---ILSNKFKKLPFSIPSHKRHLYH--- 382
                        +IS    +GL+ L++ + S    L++     P +I +  R +     
Sbjct: 379 QLAAELPDCGPALVISCKQRDGLDALVHALTSHFTDLASCAAADPIAISARARDILRQDV 438

Query: 383 LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440
           L+    +L +AS  E    +D+ +E+LR A+  +G ITG  V VE++L ++FS FC+GK
Sbjct: 439 LAGLDGFLRLASSAE----VDVASESLRSAADGIGTITGDAVGVEEVLGVVFSNFCVGK 493


>gi|303228568|ref|ZP_07315395.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-134-V-Col7a]
 gi|302516747|gb|EFL58662.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-134-V-Col7a]
          Length = 461

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 256/460 (55%), Gaps = 28/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58
           +TI A++T      + IIR+SG   F +   + K     P    +  +++Y   +D    
Sbjct: 5   DTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSAGTVPLMDRQNRTIQYGTIVDPATN 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ L+++   P S+T ED  E   HGGI  V  IL+ L    ++R+A  GEF++RAF
Sbjct: 65  KTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVSVRQILKLLVNH-DVRMAEAGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I ++TE    L++  + G +SS      ++L  + + +E  +D+
Sbjct: 124 MNGRIDLTQAEAIIDIIEAKTEESLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTIDY 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            EE D+++ +S+EV   +  +   +   +S    G +IR+G   VI+G  NAGKSSL NA
Sbjct: 184 PEE-DIEDVTSQEVREQLEPILKAMDELLSTANTGRLIRDGITTVIVGRPNAGKSSLMNA 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDIPGTTRD +   + +EG  +++ DTAGIR+T D VE  G++R    +  
Sbjct: 243 LLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYINK 302

Query: 299 ADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEEY--DH-------LI 343
           AD++L + + +   + +EI    ++   + + +  KSD+    T+E   +H        I
Sbjct: 303 ADIVLCVIDGSTPLTSEEIEILTSVSGLNTMVLLNKSDVAQVVTDENIEEHGNFTAIERI 362

Query: 344 SSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           S+  GEG   L   ++ ++   + K+   ++ S+ RH+  + Q    +E A L+  D G+
Sbjct: 363 SAKDGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEEA-LSSIDMGM 421

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D +A +LR A   LG ITG    E ++D +FS+FC+GK
Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461


>gi|330721877|gb|EGG99837.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma
           proteobacterium IMCC2047]
          Length = 399

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 146/404 (36%), Positives = 227/404 (56%), Gaps = 28/404 (6%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+G+ ++F +P SFTGE   E   HGG  V++ +L+E+ K+   R A PGEFS RAF 
Sbjct: 1   MIDQGVALLFTAPASFTGEHVLELQGHGGQVVMDLLLKEIIKL-GARQARPGEFSERAFL 59

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N KIDL +AE++ADLI S +E   R +++ + GE S      ++ L  +R ++EA +DF 
Sbjct: 60  NNKIDLTQAEAIADLIDSSSEQAARNAVKSLQGEFSKRIHDLVEALIMLRMYVEAAIDFP 119

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EEE +   +  +V +D+  +   +   + +   G  ++ G  +V+ G  NAGKSSL N L
Sbjct: 120 EEE-IDFLADSKVGSDLNEVIQRLGRVLVEAHQGAALQEGMNVVMAGLPNAGKSSLLNRL 178

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           + KD AIV +IPGTTRDVL   + ++G  + I D AG+R++ D +E+EGI+R + E++ A
Sbjct: 179 SGKDSAIVINIPGTTRDVLREHIHIDGMPLHIIDPAGLRDSPDEIEQEGIRRAWSEIKKA 238

Query: 300 DLILLLKEINSKKEISFPKNI--DFI----------FIGTKSDLYST----YTEEYDH-- 341
           D ILL+ + ++ KE + P +I  DF+           I  K DL +        E D   
Sbjct: 239 DRILLVVDASNVKE-THPHDIWPDFVDHLEGLSNITVIQNKCDLLNVEPAFINAEGDQSC 297

Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396
               +S+  GEG++ L N +K  +  +      +  + +RHL  L +   +LE     L 
Sbjct: 298 PVIRLSAKQGEGIDLLTNHLKDCMGYQAGS-EGNFSARRRHLDALERAQTFLETGQRQLQ 356

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G +++AE+LR A   L +ITG    + LL  IFS FCIGK
Sbjct: 357 AAQAG-ELLAEDLRQAQQCLSEITGEFSSDDLLGRIFSSFCIGK 399


>gi|124006860|ref|ZP_01691690.1| tRNA modification GTPase TrmE [Microscilla marina ATCC 23134]
 gi|123987541|gb|EAY27250.1| tRNA modification GTPase TrmE [Microscilla marina ATCC 23134]
          Length = 463

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 154/464 (33%), Positives = 250/464 (53%), Gaps = 32/464 (6%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----D 57
             +++TI A+ST +   AI +IR+SG   F VC+ +   K     +AS    FG     +
Sbjct: 7   TQKEDTIVALSTPSGSGAIGVIRVSGKDTFAVCDQVFYGK-TLSEQASHTVHFGTIRNDE 65

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+I+D+ +  +F +P SFT ED  E   HG   ++  +++ L      RLA  GEF++RA
Sbjct: 66  GQIIDEVVAALFKAPRSFTKEDVIEVSCHGSQYIIQQVIQLLIG-KGARLAKAGEFTQRA 124

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           + NG++DL +AE++ADLI+S+++   +++M+ M G  S    Q  ++ T + + +E +LD
Sbjct: 125 YLNGRMDLAQAEAIADLIASDSKAAHQVAMKQMRGGFSKKITQLREEFTKLAALLELELD 184

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSEE DV+  +  E+   +  LK  ++       LG  I+NG  + I+G  NAGKS+L N
Sbjct: 185 FSEE-DVEFANRDEMQRQLNHLKTAVTDMAQSFALGNAIKNGVPVAIVGKPNAGKSTLLN 243

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL ++D AIV+ IPGTTRD +  ++ LEG   +  DTAG+RET D VE  GI R F +++
Sbjct: 244 ALLQEDKAIVSAIPGTTRDSIEDEVVLEGIRFRFIDTAGLRETADEVESIGIARAFAKMK 303

Query: 298 NADLILLLKEINSKKEISFPKNI----------DFIFIGTKSDLYSTYTEEYDHLISSFT 347
            + ++L + +   +K   +   +            I +  K D Y+ +      L     
Sbjct: 304 ESQILLYMFDAVEEKREDWQAQVAQLQADHPDTKVIVVANKIDEYARFDL---FLPDGVV 360

Query: 348 GEGL----EELINKIKSILSNKFKKLPFS-----IPSHKRHLYHLSQTVRYLEMASLNEK 398
           G G+     + I++++ +L    +    S     I ++ RH   L  T++ L        
Sbjct: 361 GCGISAKEHQQIDRLQQLLIEAVQAHQLSNQDQVIVTNLRHYEALQDTLKALAQVQ-QTL 419

Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D GL  +++A ++R A   LG+ITG +    LL+ IFSKFCIGK
Sbjct: 420 DLGLSTEMVASDIRTAIYHLGEITGQISNNDLLEFIFSKFCIGK 463


>gi|319954737|ref|YP_004166004.1| tRNA modification gtpase trme [Cellulophaga algicola DSM 14237]
 gi|319423397|gb|ADV50506.1| tRNA modification GTPase trmE [Cellulophaga algicola DSM 14237]
          Length = 470

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 258/477 (54%), Gaps = 49/477 (10%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVC--EFICKKKKPFPRKASLRYFFG--LDG- 58
           +++TI A++T +   AI+IIRLSG     +    F+ +K K    + +     G  +DG 
Sbjct: 3   QQDTIVALATPSGAGAIAIIRLSGNDAITIASNHFVSRKGKKLSNQKTHTILLGHIVDGD 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           RILD+ L  +F  P S+TGE+  E   HG   +   I++   +    R A+ GEF+ RAF
Sbjct: 63  RILDEVLASIFKGPNSYTGENIVEISCHGSTYIQQEIIQLFLR-NGCRTADAGEFTLRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGKIDL +AE++AD+I+S+     +++++ M G  S+   +   +L +  S IE +LDF
Sbjct: 122 LNGKIDLSQAEAVADVIASDNAASHQIAIQQMRGGFSNEIKELRAELMNFASLIELELDF 181

Query: 179 SEEEDVQNFSSKEVLNDI-----LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           SEE DV+ F+++    D+     L LK  I S      +G +I+NG  + I+G  N GKS
Sbjct: 182 SEE-DVE-FANRAQFQDLINRITLVLKRLIDSF----AVGNVIKNGIPVAIVGEPNVGKS 235

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           +L N+L  +D AIV+DI GTTRD +  +L ++G   +  DTAGIRET DIVE  GIK+TF
Sbjct: 236 TLLNSLLNEDRAIVSDIAGTTRDTIEDELSIDGIGFRFIDTAGIRETQDIVEGIGIKKTF 295

Query: 294 LEVENADLILLLKE---INSKKEI------------SFPKNIDFIFIGTKSDLYSTYT-- 336
            +++ A+++L L +   I  KK+I             FP+    + +  K+D  +T T  
Sbjct: 296 EKIKQAEVVLYLIDGALIKEKKQIDALKIEIEKIKNQFPQK-SILLLVNKADKIATETTT 354

Query: 337 ---EEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
               E   L        I++ TGEG+E+L  ++  +++    +   +I ++ RH   L +
Sbjct: 355 LISSEMASLSAQLKTIFIAAKTGEGVEDLKEELLGLINTGALRNNETIVTNSRHYNSLLK 414

Query: 386 TVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               ++       D G   D++A ++R A     +ITG +  + LL  IF+ FCIGK
Sbjct: 415 AFEEIQKVQYG-MDSGFSGDLLAIDIRQALFHFSEITGEISSDDLLGNIFANFCIGK 470


>gi|317035274|ref|XP_001396578.2| cytokinesis protein sepA [Aspergillus niger CBS 513.88]
          Length = 2210

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 189/312 (60%), Gaps = 28/312 (8%)

Query: 7    TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR-----I 60
            TI+A+ST +  +AI+++R SGP+C Q+ + +C +   P PR A +R  +    +     +
Sbjct: 1654 TIYALSTASGRAAIAVVRASGPACVQIYKSLCPEAPLPRPRLAVVRTLYDPSQKPSPNTV 1713

Query: 61   LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSR 115
            LD G L++ FP P++ TGED  E H+HGG A+V  +L  +++  N    +R A PGEF+R
Sbjct: 1714 LDAGALVLYFPGPKTVTGEDVLELHLHGGPAIVKSVLSSISRTNNPDYTVRYAEPGEFTR 1773

Query: 116  RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
            RAF N ++DL + E+L D +S++TE QRRL++ G S  LS  Y QW  +L + R  +EA 
Sbjct: 1774 RAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSKRYEQWRHQLLYARGELEAL 1833

Query: 176  LDFSE----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
            +DFSE    +E  ++  S  V   +  L+  I+ HI     GE++RNG K+ +LG  NAG
Sbjct: 1834 IDFSEDQHFDESTEDLVS-SVAAQVRALRAQIALHIQNASKGELLRNGIKVALLGAPNAG 1892

Query: 232  KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDD-------- 282
            KSSL N +  ++ AIV+   GTTRD++ + +D+ G+  K+ D AGIR E +D        
Sbjct: 1893 KSSLLNRIVGREAAIVSTEEGTTRDIVDVGVDIGGWYCKLGDMAGIRSEPNDPTGQKKTV 1952

Query: 283  ---IVEKEGIKR 291
                VE+EGI+R
Sbjct: 1953 VIGAVEQEGIRR 1964



 Score = 42.0 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 22/136 (16%)

Query: 312  KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            ++I+ P  ID    G ++  Y     E    ++      L+  +  +   L+    +   
Sbjct: 2090 EDIASPTGID----GDENGKYDHAYWEDSLGVTHRQSSNLQRCLEHLDDFLTQTQPQSQT 2145

Query: 372  SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI----IAENLRLASVSLGKITG---CVD 424
             +PS  R   H              E D  +DI     AE+LR A+ ++ KITG     D
Sbjct: 2146 PMPSSSRQFAH-----------EFPETDMDMDIDIVTAAEHLRSAADTMAKITGRGESGD 2194

Query: 425  VEQLLDIIFSKFCIGK 440
            VE +L ++F KFC+GK
Sbjct: 2195 VEDVLGVVFEKFCVGK 2210


>gi|206890795|ref|YP_002249040.1| tRNA modification GTPase TrmE [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742733|gb|ACI21790.1| tRNA modification GTPase TrmE [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 460

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 160/411 (38%), Positives = 240/411 (58%), Gaps = 23/411 (5%)

Query: 49  SLRYFFGLDGRI---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL 105
           ++ Y F +D      +D+ L+ V  +P ++T ED  E + H G   +  IL+ +      
Sbjct: 54  TIHYGFIIDPSTQERVDEVLVTVMRAPNTYTREDIVEINCHAGYITLKRILD-IVLYEGA 112

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           RLA PGEF++RAF  G+IDL +AES+ DLI ++TE  +++++E +SG LS    +  D L
Sbjct: 113 RLAEPGEFTKRAFLRGRIDLSQAESVIDLIRAKTEQAQKIALEHLSGRLSIKINELRDAL 172

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
             + + IEA +DF EE D+  F+ +E++ +I  +K++I   I   + G+I R G    I+
Sbjct: 173 MRVCAHIEAYIDFPEE-DIDGFTEEEIIKEITHIKDEIKKLIEGYEEGKIYREGLTTAIV 231

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  N GKSSL NAL  KD AIVT++PGTTRD++   ++++G  +KI DTAGIR+  D+VE
Sbjct: 232 GKPNVGKSSLLNALLMKDRAIVTEVPGTTRDIIEEYVNIKGMPLKIVDTAGIRQAHDLVE 291

Query: 286 KEGIKRTFLEVENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEEY 339
            EGIKRT   VE A+L+LL+    + I+S  E  IS       I +  K D+ +   +  
Sbjct: 292 AEGIKRTLRAVELAELVLLVLDASRPIDSLDEEIISRITQKRLIVVINKKDIKNKEFQLP 351

Query: 340 DHL-------ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
           D L       IS+  GEG+EEL   I K+ +S K+++    + +  RH   L   +  LE
Sbjct: 352 DFLKNKPTVEISALKGEGIEELKELIFKTTISGKYEQEGLVV-TKLRHKLALDSALNALE 410

Query: 392 MA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  S   K+  L+I A  LR A   LG+I G V  E++L++IFS+FCIGK
Sbjct: 411 NAFQSFKNKEP-LEITAMFLREALGFLGQIIGVVTTEEILNLIFSEFCIGK 460


>gi|326476482|gb|EGE00492.1| mitochondrial GTPase [Trichophyton tonsurans CBS 112818]
          Length = 594

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 128/347 (36%), Positives = 197/347 (56%), Gaps = 35/347 (10%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR 59
            + +  TI+A+ST    +AI+IIR+SGP C  + + +C  +K P PR A+LR  +     
Sbjct: 40  QDEKPTTIYALSTAPGRAAIAIIRISGPDCIPIYKALCPDRKLPKPRFAALRTIYEPGKP 99

Query: 60  I-----LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP--------NL 105
           +     LD G L+  FP+P + TGED  E HVHG  AV+  IL  + K          ++
Sbjct: 100 LSADNALDSGALVFHFPAPNTVTGEDVLELHVHGSPAVIKSILSAIPKCAGPGDAPSASI 159

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           R A PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G +  LS+ Y QW  +L
Sbjct: 160 RYAEPGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQWRKQL 219

Query: 166 THIRSFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
            + R  +EA +DFSE+    E V +F S  V   +  L + I+ HI     GE++R+G K
Sbjct: 220 LYARGELEALIDFSEDQHFDESVDDFISS-VTGQVDSLLHQINLHIKNASKGELLRSGIK 278

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + +LG  NAGKSSL N +  +D AIV+   GTTRD++ + +DL G+L K  D AG+R   
Sbjct: 279 VALLGAPNAGKSSLLNQIVGRDAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSKL 338

Query: 279 ------------ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
                        T   +E+EGI+R       +D+++++  +   +E
Sbjct: 339 SQSQLAAQGHVVSTVGKIEEEGIRRAKARALESDVVIVVLSVEGSRE 385


>gi|82752290|ref|YP_418031.1| tRNA modification GTPase TrmE [Staphylococcus aureus RF122]
 gi|123549492|sp|Q2YZB8|MNME_STAAB RecName: Full=tRNA modification GTPase mnmE
 gi|82657821|emb|CAI82276.1| tRNA modification GTPase [Staphylococcus aureus RF122]
          Length = 459

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 152/462 (32%), Positives = 252/462 (54%), Gaps = 33/462 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62
           +TI ++ST     AI I+RLSGP   ++ + + K K       S    +G    I+D   
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYG---HIIDPES 60

Query: 63  -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
                + ++ V  +P++FT ED  E + HGGI  +N +LE L      RLA PGEF++RA
Sbjct: 61  KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARLAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D + S+T+   +++M  + G LS L  +    +  I + +E ++D
Sbjct: 120 FLNGRIDLSQAEAVMDFVRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVEK G++R+   + 
Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI----- 343
            ADLIL +  +N+ + ++          KN D I I  K DL       E   +I     
Sbjct: 300 QADLILFV--LNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPL 357

Query: 344 ---SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398
              S    EG++EL  +I+ +    + +    +  S+ RH+  L Q  + ++ A    E 
Sbjct: 358 IQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAES 417

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 418 GVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459


>gi|314935198|ref|ZP_07842551.1| tRNA modification GTPase TrmE [Staphylococcus hominis subsp.
           hominis C80]
 gi|313656533|gb|EFS20272.1| tRNA modification GTPase TrmE [Staphylococcus hominis subsp.
           hominis C80]
          Length = 459

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 153/459 (33%), Positives = 257/459 (55%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K KK      S    +G  +D     +
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPEAVEIGDKLYKGKKKLKDVPSHTINYGHIIDPETDEV 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF N
Sbjct: 64  VEEVMISVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTHGARMAEPGEYTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L  Q    +  I + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKQQRQSILEILAQVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ +++ +L     +KN+I   +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 183 YDDVEDATTEFLLAQSKKIKNEIDQLLETGTQGKIMREGLSTVIVGKPNVGKSSMLNNLI 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  AD
Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302

Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343
           LIL +  +N+ + ++          KN D I I  K+DL      EE   +I        
Sbjct: 303 LILFV--LNNNEPLTEEDRTLYEVIKNEDAIVIVNKTDLERRLDIEEVKTMIGDTPLIQT 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG++EL  +I+ +    + +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGVDELELQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAEAGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L++ +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWELLGEIIGESASDELINQLFSQFCLGK 459


>gi|228474138|ref|ZP_04058875.1| tRNA modification GTPase TrmE [Staphylococcus hominis SK119]
 gi|228271833|gb|EEK13170.1| tRNA modification GTPase TrmE [Staphylococcus hominis SK119]
          Length = 459

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 153/459 (33%), Positives = 257/459 (55%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K KK      S    +G  +D     +
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPEAVEIGDKLYKGKKKLKDVPSHTINYGHIIDPETDEV 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF N
Sbjct: 64  VEEVMISVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTHGARMAEPGEYTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L  Q    +  I + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKQQRQSILEILAQVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ +++ +L     +KN+I   +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 183 YDDVEDATTEFLLAQSKKIKNEIDQLLETGTQGKIMREGLSTVIVGKPNVGKSSMLNNLI 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  AD
Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302

Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343
           LIL +  +N+ + ++          KN D I I  K+DL      EE   +I        
Sbjct: 303 LILFV--LNNNEPLTEEDRTLYEVIKNEDAIVIVNKTDLERRLDIEEVKTMIGDTPLIQT 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG++EL  +I+ +    + +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELELQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAEAGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L++ +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWELLGEIIGESASDELINQLFSQFCLGK 459


>gi|148243337|ref|YP_001228494.1| tRNA modification GTPase TrmE [Synechococcus sp. RCC307]
 gi|205829180|sp|A5GW82|MNME_SYNR3 RecName: Full=tRNA modification GTPase mnmE
 gi|147851647|emb|CAK29141.1| tRNA modification GTPase [Synechococcus sp. RCC307]
          Length = 453

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 153/442 (34%), Positives = 242/442 (54%), Gaps = 37/442 (8%)

Query: 22  IIRLSGPSCFQVCEFICKKK-KPFPRKA--SLRYFFG-----LDGRILDKGLLIVFPSPE 73
           I+R+SGP      E I ++  +P  +++  S R  +G      +G ++D+ LL++  +P 
Sbjct: 26  IVRISGPQA----EAIGRQLFQPAGKQSWESHRVLYGHVNDPANGDVVDEVLLLLMRAPR 81

Query: 74  SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133
           SFT E   EFH HGG+  V  +LE L      R A PGEFS+RAF NG++DL  AE++++
Sbjct: 82  SFTRETVVEFHGHGGLVAVQRLLE-LVLAAGARRALPGEFSQRAFLNGRLDLTRAEAISE 140

Query: 134 LISSETEMQRRLSMEGMSGELS----SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           L+S+ +     L+M G+ G L     +L  Q +D+L  +    EA +DF  EED+ +   
Sbjct: 141 LVSARSRRAAELAMAGLDGGLQQRIEALRDQLLDQLCEL----EARVDF--EEDLPSLDG 194

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
             V   +  ++  +   +  G+  +++R+G ++ I+G  N GKSSL NAL+  + AIVTD
Sbjct: 195 AAVCTALRDVQQALDQLVLDGQQAQLLRDGLRVAIIGRPNVGKSSLLNALSGHERAIVTD 254

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI- 308
           +PGTTRD+L  DL L+G  + + DTAGIR T D VE+ GI+R+     +AD ++LL ++ 
Sbjct: 255 LPGTTRDLLDYDLVLQGVPITLLDTAGIRSTADRVEQLGIERSRAAFASADAVVLLYDLS 314

Query: 309 ------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI- 361
                 +S      P     + +G KSDL +         IS+ +G GL EL + +  + 
Sbjct: 315 RGWSPDDSALRNEVPDGTPLLVVGNKSDLAAEPATTQGLAISARSGLGLAELSSALLKLC 374

Query: 362 -LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGK 418
            LS + + L  ++  ++R     +     L  +    +D GL  D    +LR A  +LG+
Sbjct: 375 GLSGEGQGLLLAL--NQRQCDLAAAASAALGRSQQAARD-GLPWDFWTIDLREAIRALGE 431

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           ITG    E +LD +FS+FCIGK
Sbjct: 432 ITGAEITEAVLDRVFSRFCIGK 453


>gi|222153198|ref|YP_002562375.1| tRNA modification GTPase TrmE [Streptococcus uberis 0140J]
 gi|222114011|emb|CAR42339.1| tRNA modification GTPase TrmE [Streptococcus uberis 0140J]
          Length = 458

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 255/459 (55%), Gaps = 22/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG     + + + K K        ++ Y   LD  
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTEALAIAKKVFKGKDLEAVASHTINYGHILDPE 62

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++ V   P++FT ED  E + HGGIAV N IL+ L K    R+A PGEF++R
Sbjct: 63  KNEILDEVMVTVMKEPKTFTREDVVEINTHGGIAVTNEILQLLIK-NGARMAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+    ++++ + G L  L      ++ +  + +E ++
Sbjct: 122 AFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLKELINSTRQEILNTLAQVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++  +       +N +   +   K G+I+R G    I+G  N GKSSL 
Sbjct: 182 DYPEYDDVEEMTTALMREKTQEFQNLLEQLLRTAKRGKILREGLSTAIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKAL 301

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEY---DHL-IS 344
             ADL+LL+  +N+ + ++          K  + I +  K+DL     ++    D++ IS
Sbjct: 302 NEADLVLLV--LNASESLTEQDRVLLDLSKESNRIILLNKTDLPQAIEKDQIPEDYIEIS 359

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
               E ++++ ++I  +   +    +   +  S+ RH+  + Q V+ L+  +   E    
Sbjct: 360 VLKNENIDQIEDRINDLFFENAGLVEQDATYLSNARHISLIEQAVQSLQAVNEGLEMGMP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 VDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|326484082|gb|EGE08092.1| tRNA modification GTPase [Trichophyton equinum CBS 127.97]
          Length = 594

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 128/347 (36%), Positives = 197/347 (56%), Gaps = 35/347 (10%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR 59
            + +  TI+A+ST    +AI+IIR+SGP C  + + +C  +K P PR A+LR  +     
Sbjct: 40  QDEKPTTIYALSTAPGRAAIAIIRISGPDCIPIYKALCPDRKLPKPRFAALRTIYEPGKP 99

Query: 60  I-----LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP--------NL 105
           +     LD G L+  FP+P + TGED  E HVHG  AV+  IL  + K          ++
Sbjct: 100 LSADNALDSGALVFHFPAPNTVTGEDVLELHVHGSPAVIKSILSAIPKCAGPGDAPSASI 159

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           R A PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G +  LS+ Y QW  +L
Sbjct: 160 RYAEPGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQWRKQL 219

Query: 166 THIRSFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
            + R  +EA +DFSE+    E V +F S  V   +  L + I+ HI     GE++R+G K
Sbjct: 220 LYARGELEALIDFSEDQHFDESVDDFISS-VTGQVDSLLHQINLHIKNASKGELLRSGIK 278

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + +LG  NAGKSSL N +  +D AIV+   GTTRD++ + +DL G+L K  D AG+R   
Sbjct: 279 VALLGAPNAGKSSLLNQIVGRDAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSKL 338

Query: 279 ------------ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
                        T   +E+EGI+R       +D+++++  +   +E
Sbjct: 339 SQSQLAAQGHVVSTVGKIEEEGIRRAKARALESDVVIVVLSVEGSRE 385


>gi|126651990|ref|ZP_01724182.1| tRNA modification GTPase [Bacillus sp. B14905]
 gi|126591259|gb|EAZ85368.1| tRNA modification GTPase [Bacillus sp. B14905]
          Length = 461

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 154/461 (33%), Positives = 255/461 (55%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFG--LDGR 59
           E +TI A+ST     AI+I+RLSG     + + I K    K    K S    +G  +D +
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDEAVAIADKIFKSPGGKSLTTKDSHTIHYGHLVDPK 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ++++ +L +   P++FT ED  E + HGG+  VN +L+ LA     RLA PGEF++R
Sbjct: 62  TKEVVEEVMLSLMRGPKTFTREDVVEINCHGGLVSVNRVLQ-LALTNGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G+LS L G     L    + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLIGDLRQALLETLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +   ++    +++++I   +     G+I+R G   VILG  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTVPVLVEKCTWVRDEIIKLLQTSSQGKILREGLSTVILGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSREAL 300

Query: 297 ENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYS----TYTEEY--DHLI- 343
             ADLIL +     E+ ++ E  F   + +D+I I  K+DL         +E    H I 
Sbjct: 301 RGADLILFVLNYADELTAEDERLFETIEAMDYIVIINKTDLPQKINLARVKELAGKHRIV 360

Query: 344 --SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S    EG+ EL   I ++    + +    +  S+ RH+  L Q    +E A +  +  
Sbjct: 361 TTSLLQEEGVTELEEAIAALFFEGQLEAGDLTYVSNARHIALLHQAQATVEDAIAAAQAG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  ++      LG+I G    E L++ +FS+FC+GK
Sbjct: 421 VPVDMVQIDVTRTWELLGEIIGDTVQESLINQLFSQFCLGK 461


>gi|169830197|ref|YP_001700355.1| tRNA modification GTPase trmE [Lysinibacillus sphaericus C3-41]
 gi|205415777|sp|B1HPM3|MNME_LYSSC RecName: Full=tRNA modification GTPase mnmE
 gi|168994685|gb|ACA42225.1| Probable tRNA modification GTPase trmE [Lysinibacillus sphaericus
           C3-41]
          Length = 461

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 154/461 (33%), Positives = 255/461 (55%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFG--LDGR 59
           E +TI A+ST     AI+I+RLSG     + + I K    K    K S    +G  +D +
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDEAVAIADKIFKSPGGKSLTTKDSHTIHYGHLVDPK 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ++++ +L +   P++FT ED  E + HGG+  VN +L+ LA     RLA PGEF++R
Sbjct: 62  TNEVVEEVMLSLMRGPKTFTREDVVEINCHGGLVSVNRVLQ-LALTNGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G+LS L G     L    + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLIGDLRQALLETLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +   ++    +++++I   +     G+I+R G   VILG  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTVPVLVEKCTWVRDEIIKLLQTSSQGKILREGLSTVILGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSREAL 300

Query: 297 ENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYS----TYTEEY--DHLI- 343
             ADLIL +     E+ ++ E  F   + +D+I I  K+DL         +E    H I 
Sbjct: 301 RGADLILFVLNYADELTAEDERLFETIEAMDYIVIINKTDLPQKINLARVKELAGKHRIV 360

Query: 344 --SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S    EG+ EL   I ++    + +    +  S+ RH+  L Q    +E A +  +  
Sbjct: 361 TTSLLQEEGVTELEEAIAALFFEGQIEAGDLTYVSNARHIALLHQAQATVEDAIAAAQAG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  ++      LG+I G    E L++ +FS+FC+GK
Sbjct: 421 VPVDMVQIDVTRTWELLGEIIGDTVQESLINQLFSQFCLGK 461


>gi|315925604|ref|ZP_07921814.1| tRNA modification GTPase TrmE [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621145|gb|EFV01116.1| tRNA modification GTPase TrmE [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 457

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 150/457 (32%), Positives = 256/457 (56%), Gaps = 24/457 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR-------YFFGL 56
           + + I A++T +    + I+R+SG     V + + +      + AS         + +  
Sbjct: 5   QDDVIAAIATPSGVGGVGIVRISGKDAIAVADRVYQNASD-QQLASFETHTIHYGHCYDA 63

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G+ +D+ L+ +  +P S+T ED  E + HGG   ++ +L+ + +    RLA+PGEF+RR
Sbjct: 64  QGKRIDEVLVSIMKAPRSYTAEDVVEINCHGGPVALHAVLDAVIR-AGARLADPGEFTRR 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE+++D+I ++T +    S+  +SG LS  Y     +L H+ +FI+A +
Sbjct: 123 AFVNGRIDLTQAEAVSDIIEAKTAIGLAYSVNQLSGGLSKKYQAVDAELLHLMTFIDAAI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  D++  +   +   I  L   + + +   ++G+I RNG   VILG  N GKSSL 
Sbjct: 183 DYPEY-DIETVTGDTLRRSIDGLIVSVDALLDSAQMGKIYRNGVDTVILGEPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D A+VTDIPGTTRDV+   +++EG    I DTAGIRETDD+VEK G++++   +
Sbjct: 242 NKLIREDKALVTDIPGTTRDVVEAYINIEGIPFHIIDTAGIRETDDVVEKLGVEKSKQMM 301

Query: 297 ENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS---TYTEEYDHLISSFT 347
           + A+LIL++ +++ +        I+  ++  +I I  K DL     T  +  +  +S  T
Sbjct: 302 DRAELILMMTDVSRETSEDEDTLITAFQDKPYIRIYNKIDLKDEVLTDLKPNEIALSIKT 361

Query: 348 GEGLEELINKIKSILS--NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--D 403
             GL+ L  ++ ++++     K     I S+ RH+  L Q VR     +LN    G+  D
Sbjct: 362 ETGLDALRRQMVAMVTGNQTAKAADDVIVSNLRHVNLLRQ-VRENLTNALNGLSIGMSVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++A +L  A  +L +ITG    + ++D IF+ FC+GK
Sbjct: 421 MVAIDLEEALENLRRITGQSLGDDIIDQIFANFCLGK 457


>gi|298695968|gb|ADI99190.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 459

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 152/462 (32%), Positives = 252/462 (54%), Gaps = 33/462 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62
           +TI ++ST     AI I+RLSGP   ++ + + K K       S    +G    I+D   
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYG---HIIDPES 60

Query: 63  -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
                + ++ V  +P++FT ED  E + HGGI  +N +LE L      R+A PGEF++RA
Sbjct: 61  KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D
Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVEK G++R+   + 
Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI----- 343
            ADLIL +  +N+ + ++          KN D I I  K DL       E   +I     
Sbjct: 300 QADLILFV--LNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGNTPL 357

Query: 344 ---SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398
              S    EG++EL  +I+ +    + +    +  S+ RH+  L Q  + ++ A    E 
Sbjct: 358 IQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAES 417

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 418 GVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459


>gi|15928297|ref|NP_375830.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           N315]
 gi|21284359|ref|NP_647447.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49484907|ref|YP_042131.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|88196667|ref|YP_501498.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148269143|ref|YP_001248086.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150395225|ref|YP_001317900.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           JH1]
 gi|221141513|ref|ZP_03566006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253316838|ref|ZP_04840051.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253730397|ref|ZP_04864562.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733841|ref|ZP_04868006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257424194|ref|ZP_05600623.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426871|ref|ZP_05603273.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429507|ref|ZP_05605894.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432154|ref|ZP_05608517.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435115|ref|ZP_05611166.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           M876]
 gi|257793536|ref|ZP_05642515.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9781]
 gi|258411158|ref|ZP_05681437.1| tRNA modification GTPase trmE [Staphylococcus aureus A9763]
 gi|258420938|ref|ZP_05683872.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9719]
 gi|258438577|ref|ZP_05689800.1| tRNA modification GTPase trmE [Staphylococcus aureus A9299]
 gi|258443967|ref|ZP_05692305.1| tRNA modification GTPase mnmE [Staphylococcus aureus A8115]
 gi|258446217|ref|ZP_05694377.1| tRNA modification GTPase mnmE [Staphylococcus aureus A6300]
 gi|258449124|ref|ZP_05697230.1| tRNA modification GTPase trmE [Staphylococcus aureus A6224]
 gi|258454398|ref|ZP_05702366.1| tRNA modification GTPase TrmE [Staphylococcus aureus A5937]
 gi|269204349|ref|YP_003283618.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894277|ref|ZP_06302507.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8117]
 gi|282907045|ref|ZP_06314893.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282910024|ref|ZP_06317832.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912272|ref|ZP_06320068.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282912912|ref|ZP_06320704.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918066|ref|ZP_06325816.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           D139]
 gi|282921288|ref|ZP_06329006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           C427]
 gi|282922540|ref|ZP_06330230.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           C101]
 gi|282927748|ref|ZP_06335362.1| tRNA modification GTPase TrmE [Staphylococcus aureus A10102]
 gi|283767788|ref|ZP_06340703.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
           H19]
 gi|283959482|ref|ZP_06376923.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293497965|ref|ZP_06665819.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293511555|ref|ZP_06670249.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           M809]
 gi|293550164|ref|ZP_06672836.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295406862|ref|ZP_06816666.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8819]
 gi|295429295|ref|ZP_06821917.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275689|ref|ZP_06858196.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297209454|ref|ZP_06925852.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297245897|ref|ZP_06929759.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8796]
 gi|297589203|ref|ZP_06947844.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300911478|ref|ZP_07128927.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304379946|ref|ZP_07362675.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|54039754|sp|P66973|MNME_STAAW RecName: Full=tRNA modification GTPase mnmE
 gi|54042258|sp|P66972|MNME_STAAN RecName: Full=tRNA modification GTPase mnmE
 gi|73919889|sp|Q6GD92|MNME_STAAR RecName: Full=tRNA modification GTPase mnmE
 gi|122538496|sp|Q2FUQ2|MNME_STAA8 RecName: Full=tRNA modification GTPase mnmE
 gi|189036211|sp|A6U595|MNME_STAA2 RecName: Full=tRNA modification GTPase mnmE
 gi|189036212|sp|A5IWD7|MNME_STAA9 RecName: Full=tRNA modification GTPase mnmE
 gi|13702669|dbj|BAB43809.1| possible thiophene and furan oxidation protein [Staphylococcus
           aureus subsp. aureus N315]
 gi|21205803|dbj|BAB96495.1| possible thiophene and furan oxidation protein [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49243036|emb|CAG41770.1| probable tRNA modification GTPase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|87204225|gb|ABD32035.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147742212|gb|ABQ50510.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149947677|gb|ABR53613.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           JH1]
 gi|253725877|gb|EES94606.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728144|gb|EES96873.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257273212|gb|EEV05314.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276502|gb|EEV07953.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279988|gb|EEV10575.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283033|gb|EEV13165.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285711|gb|EEV15827.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           M876]
 gi|257787508|gb|EEV25848.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9781]
 gi|257840043|gb|EEV64508.1| tRNA modification GTPase trmE [Staphylococcus aureus A9763]
 gi|257843128|gb|EEV67543.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9719]
 gi|257848136|gb|EEV72128.1| tRNA modification GTPase trmE [Staphylococcus aureus A9299]
 gi|257850851|gb|EEV74795.1| tRNA modification GTPase mnmE [Staphylococcus aureus A8115]
 gi|257855043|gb|EEV77986.1| tRNA modification GTPase mnmE [Staphylococcus aureus A6300]
 gi|257857557|gb|EEV80452.1| tRNA modification GTPase trmE [Staphylococcus aureus A6224]
 gi|257863492|gb|EEV86252.1| tRNA modification GTPase TrmE [Staphylococcus aureus A5937]
 gi|262076639|gb|ACY12612.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269942298|emb|CBI50713.1| probable tRNA modification GTPase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282314761|gb|EFB45147.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           C101]
 gi|282315703|gb|EFB46087.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           C427]
 gi|282318351|gb|EFB48711.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           D139]
 gi|282323012|gb|EFB53331.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           M899]
 gi|282323968|gb|EFB54284.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326090|gb|EFB56395.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329944|gb|EFB59465.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590508|gb|EFB95586.1| tRNA modification GTPase TrmE [Staphylococcus aureus A10102]
 gi|282763322|gb|EFC03452.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8117]
 gi|283461667|gb|EFC08751.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
           H19]
 gi|283471926|emb|CAQ51137.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283789074|gb|EFC27901.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285818375|gb|ADC38862.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
           aureus 04-02981]
 gi|290919211|gb|EFD96287.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096896|gb|EFE27154.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291465513|gb|EFF08045.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           M809]
 gi|294968327|gb|EFG44352.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8819]
 gi|295127054|gb|EFG56698.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296885915|gb|EFH24850.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297177262|gb|EFH36515.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8796]
 gi|297577714|gb|EFH96427.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300887657|gb|EFK82853.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302334326|gb|ADL24519.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302752589|gb|ADL66766.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304341526|gb|EFM07436.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|312436861|gb|ADQ75932.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312831050|emb|CBX35892.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129541|gb|EFT85533.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195224|gb|EFU25612.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|323439701|gb|EGA97419.1| tRNA modification GTPase TrmE [Staphylococcus aureus O11]
 gi|323443274|gb|EGB00891.1| tRNA modification GTPase TrmE [Staphylococcus aureus O46]
 gi|329315432|gb|AEB89845.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329725659|gb|EGG62138.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           21172]
 gi|329731690|gb|EGG68050.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           21189]
 gi|329732386|gb|EGG68736.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           21193]
          Length = 459

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 152/462 (32%), Positives = 252/462 (54%), Gaps = 33/462 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62
           +TI ++ST     AI I+RLSGP   ++ + + K K       S    +G    I+D   
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYG---HIIDPES 60

Query: 63  -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
                + ++ V  +P++FT ED  E + HGGI  +N +LE L      R+A PGEF++RA
Sbjct: 61  KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D
Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVEK G++R+   + 
Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI----- 343
            ADLIL +  +N+ + ++          KN D I I  K DL       E   +I     
Sbjct: 300 QADLILFV--LNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPL 357

Query: 344 ---SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398
              S    EG++EL  +I+ +    + +    +  S+ RH+  L Q  + ++ A    E 
Sbjct: 358 IQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAES 417

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 418 GVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459


>gi|149370691|ref|ZP_01890380.1| tRNA modification GTPase TrmE [unidentified eubacterium SCB49]
 gi|149356242|gb|EDM44799.1| tRNA modification GTPase TrmE [unidentified eubacterium SCB49]
          Length = 465

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 159/468 (33%), Positives = 250/468 (53%), Gaps = 37/468 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGR 59
           ++TI A++T A   AI++IRLSG     +    F     K    +A+     G      R
Sbjct: 3   QDTIVALATPAGAGAIAVIRLSGSDAIAIATAMFNAVSGKKLNHQATHTVHLGHIKEGTR 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ L  +F +P+S+TGED  EF  HG   +   I++ L      R+ANPGEF+ RAF 
Sbjct: 63  VVDEVLATIFKNPKSYTGEDVVEFSCHGSNYIQQEIIQ-LCLKKGARMANPGEFTLRAFI 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S+++   +L+++ M G  SS   +  ++L +  S IE +LDF+
Sbjct: 122 NGKMDLSQAEAVADLIASDSQASHQLAIQQMRGGFSSEIKKLREELLNFASLIELELDFA 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE DV   +  E    I  +   +   I     G +++NG  + I+G  N GKS+L NAL
Sbjct: 182 EE-DVAFANRDEFQKLITRITQVLKRLIDSFATGNVLKNGIPVAIVGEPNVGKSTLLNAL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DI GTTRD +  +L++ G   +  DTAGIR+T D +E  GIK+TF ++E A
Sbjct: 241 LNEERAIVSDIAGTTRDTIEDELNIGGIAFRFIDTAGIRDTSDTIEGLGIKKTFEKMEQA 300

Query: 300 DLILLL--------KEINSKKEISFPKN-------------IDFIFIGTKSDLYSTYTEE 338
            ++L L         +  ++ EI   KN             ID I     S++ + +  +
Sbjct: 301 QVVLFLIAATQLLQDKTATQIEIEKIKNKHPQKTLVMVVNKIDQIQTKQISEVKNIHLPQ 360

Query: 339 YDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH----LYHLSQTVRYLEM 392
              L  IS+ TGEG+E L   +   ++    +   +I ++ RH    L  L + VR  E 
Sbjct: 361 KTVLIPISAKTGEGVETLKTTLLDFVNTGALRNNDTIVTNSRHYDALLKALEEIVRVQEG 420

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               + +   D++A ++R A    G+ITG V  ++LL  IF+ FCIGK
Sbjct: 421 I---DNNLSSDLMAIDIRQALYHFGEITGQVTNDELLGNIFANFCIGK 465


>gi|331266427|ref|YP_004326057.1| tRNA modification GTPase TrmE [Streptococcus oralis Uo5]
 gi|326683099|emb|CBZ00717.1| tRNA modification GTPase TrmE [Streptococcus oralis Uo5]
          Length = 457

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 262/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS  L Y   +D 
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V       +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTREFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  +  T E       IS 
Sbjct: 300 LKEADLVLLVLNASEPLAAQDRQLLEISQDTNRIILLNKTDLPEAIETSEIPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  ++NE  + G+
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|258423240|ref|ZP_05686132.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9635]
 gi|257846569|gb|EEV70591.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9635]
          Length = 459

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 152/462 (32%), Positives = 252/462 (54%), Gaps = 33/462 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62
           +TI ++ST     AI I+RLSGP   ++ + + K K       S    +G    I+D   
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYG---HIIDPES 60

Query: 63  -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
                + ++ V  +P++FT ED  E + HGGI  +N +LE L      R+A PGEF++RA
Sbjct: 61  KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D
Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVEK G++R+   + 
Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI----- 343
            ADLIL +  +N+ + ++          KN D I I  K DL       E   +I     
Sbjct: 300 QADLILFV--LNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPL 357

Query: 344 ---SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398
              S    EG++EL  +I+ +    + +    +  S+ RH+  L Q  + ++ A    E 
Sbjct: 358 IQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAES 417

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 418 GVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459


>gi|332664864|ref|YP_004447652.1| tRNA modification GTPase mnmE [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333678|gb|AEE50779.1| tRNA modification GTPase mnmE [Haliscomenobacter hydrossis DSM
           1100]
          Length = 458

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 163/465 (35%), Positives = 254/465 (54%), Gaps = 40/465 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61
           +TI A++T     AI +IRLSGP   Q+ + +   KK   ++AS    FG        IL
Sbjct: 4   DTIVALATPPGIGAIGVIRLSGPQAIQIVDAVFYGKK-LDKQASHTIHFGTIRDEQDHIL 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM---PNLRLANPGEFSRRAF 118
           D+ L  +F  P S+TGE+  E   HG     N I++EL ++      RLA PGEF+ RAF
Sbjct: 63  DEVLASLFVEPRSYTGENVVEISCHGS----NYIIQELIRLFIRKGARLAQPGEFTLRAF 118

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ADLI+S +E  ++++++ + G +SS   +   +L    S IE +LDF
Sbjct: 119 LNGQMDLSQAEAVADLIASSSEAAQQVAIKQLRGGISSEIKKLRQELIDFASLIELELDF 178

Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
            EE DV+ F++++ L D++  L   +   +   +LG  I+ G   VI G  NAGKS+L N
Sbjct: 179 GEE-DVE-FANRDQLRDLVEKLIRLMHKLLDSFQLGNAIKEGVNTVIAGRPNAGKSTLLN 236

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  ++ AIV++I GTTRD +   L+++G   +I DTAGIRE  D +E  GI++T  +V 
Sbjct: 237 ALLNEERAIVSEIAGTTRDTIEESLNIQGIQFRIIDTAGIREASDTIEAIGIQKTLEKVR 296

Query: 298 NADLIL----LLKEINSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL------- 342
            + ++L    ++K   ++ E    +    N   + +  K DL + YT EY H        
Sbjct: 297 QSAVLLYIFDVIKTQPAQLEADLAQLLHPNTQLLVVANKMDL-NPYT-EYQHYANPHFSA 354

Query: 343 -----ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                IS+     +E L  ++ ++++SN+   +  +I S+ RH   L +    LE     
Sbjct: 355 EQWIPISAANEMNIEYLKERLYQTVVSNEV-SMDAAIVSNVRHYEALQKAKESLEAVIQG 413

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                  D IA ++R +   LG+ITG +  E LLD IFS+FCIGK
Sbjct: 414 LSSAVTTDFIAMDIRHSLAYLGEITGEISTEDLLDNIFSRFCIGK 458


>gi|94984585|ref|YP_603949.1| tRNA modification GTPase TrmE [Deinococcus geothermalis DSM 11300]
 gi|205829146|sp|Q1J154|MNME_DEIGD RecName: Full=tRNA modification GTPase mnmE
 gi|94554866|gb|ABF44780.1| tRNA modification GTPase trmE [Deinococcus geothermalis DSM 11300]
          Length = 439

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 141/449 (31%), Positives = 240/449 (53%), Gaps = 31/449 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL----DGRI 60
           +TI A++T    + + I+R+SGP    + +   + +++P   +   R+ FG     DG +
Sbjct: 8   DTIAAIATAPGSAGVGIVRISGPDALGIADGAFRGRRRPSATRGG-RFLFGQLVAGDGEV 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL +VF  P S+TGED AE   HG  AV+  +L  + ++   R A PGEF+ RA+  
Sbjct: 67  LDEGLCLVFRGPHSYTGEDVAELQTHGSPAVLARVLSRVLEL-GARPARPGEFTLRAYLA 125

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ +L+++ TE  RR +  G+SG L     +    +T   + ++A LD+ E
Sbjct: 126 GRLDLAQAEAVLELVNAGTETARRQAALGLSGALGERVERIAAHVTRTLAALQAMLDYPE 185

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E        ++    +   + ++ + +   + G++   G ++ ++G  NAGKSSL NAL 
Sbjct: 186 E----GVPDEDRTVPLAAAEAELHALVGTARAGQVATRGARLALIGRPNAGKSSLLNALL 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + +IVT IPGTTRD L   L L G  V + DTAG+RET D VE  G+++     E+AD
Sbjct: 242 GYERSIVTPIPGTTRDYLEAQLSLAGVPVTLVDTAGLRETGDEVEAAGVRQAVRLAESAD 301

Query: 301 LILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
           L+L+L++ +  ++      P+    + + TK+DL + +T+     +S+ TG+GL  L + 
Sbjct: 302 LVLVLEDGSQPRDHLPAELPRETRMLRVRTKADLPAAWTDPGALDVSAVTGQGLSALRDA 361

Query: 358 IKSIL------SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           I + L         +        + +R L H+ Q  R     SL +   G + + E LR 
Sbjct: 362 IHTALIGDAAQGEAWLTTERQADAARRALTHI-QAAR-----SLPDDLAGYE-LEEALR- 413

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +L  +TG    + ++D +F  FC+GK
Sbjct: 414 ---ALADLTGRDVQDDVVDAVFRNFCVGK 439


>gi|322421976|ref|YP_004201199.1| tRNA modification GTPase TrmE [Geobacter sp. M18]
 gi|320128363|gb|ADW15923.1| tRNA modification GTPase TrmE [Geobacter sp. M18]
          Length = 455

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 240/455 (52%), Gaps = 22/455 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
           ++TI A+ST      I I+R+SGP+   + + I K K     K S R+ +G       G 
Sbjct: 4   RDTIAAISTPLGEGGIGIVRISGPASLPIAQIIFKAKSNGGLK-SHRFSYGAVVSPDSGD 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ + +    P S+T ED  E   HGG  VV+ IL  L      RLA+PGEF++RAF 
Sbjct: 63  LVDEAMAVYMKGPNSYTREDVVEIQCHGGTLVVSRILS-LVLTEGARLADPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL++AE++ D+ISS T+    L+     G LS       D + +  +++EA +DF 
Sbjct: 122 NGRIDLVQAEAVMDVISSRTDASLALAQHQREGLLSKRIAAVKDGIVYALAYVEALIDFP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+ DV      +VL  +     ++ + I     G ++R G  +VI G  N GKSSL N L
Sbjct: 182 ED-DVDVAVETDVLGKVAPALAELDALIEGFDEGRVLREGVSVVIAGKPNVGKSSLLNTL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K+  AIVT +PGTTRD++   +++ G  VK+ DTAGIRE++D VE+EG++ +   +  A
Sbjct: 241 LKEKRAIVTSVPGTTRDLIEEVVNINGLPVKLLDTAGIRESEDQVEQEGVRLSLDRIPKA 300

Query: 300 DLILLLKEINS---KKEISFPKNI---DFIFIGTKSDLYSTYTEEYDH-----LISSFTG 348
           DL+L + + +S   +++ S    I     I +  KSDL        D       IS+ TG
Sbjct: 301 DLVLFVVDGSSPFGEEDASILLAIGSKSCIVVRNKSDLPVAAALPGDCSAPVVAISTLTG 360

Query: 349 EGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
            G+ EL + I +     +      F   S  RH   L +    L+    N E    ++++
Sbjct: 361 AGVPELRDAITNAFMHGHAIDGREFVAVSKARHRDALLKARISLQAFVGNLEAGVNMELL 420

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +LR A  ++G++TG    + +LD IFS FCIGK
Sbjct: 421 PVDLRDALDAVGEVTGETTADDVLDRIFSSFCIGK 455


>gi|257871382|ref|ZP_05651035.1| tRNA modification GTPase mnmE [Enterococcus gallinarum EG2]
 gi|257805546|gb|EEV34368.1| tRNA modification GTPase mnmE [Enterococcus gallinarum EG2]
          Length = 465

 Score =  219 bits (557), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 157/464 (33%), Positives = 249/464 (53%), Gaps = 26/464 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGLD 57
           +  E +TI A+ST     AISI+RLSG     + + +    KKK       ++ Y    D
Sbjct: 4   ITQEFDTIAAISTPPGEGAISIVRLSGEQAISIADAVFQSGKKKLIDVSSHTIHYGHIFD 63

Query: 58  G---RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               +++D+ ++ +   P++FT ED  E + HGGI VVN IL+ L      RLA PGEF+
Sbjct: 64  PEKYQMMDEVMVSIMRKPKTFTREDIVEINCHGGIVVVNQILQ-LVLRQGARLAEPGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS L  Q   ++    + +E 
Sbjct: 123 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAINQLDGNLSRLIRQLRQEILETLAQVEV 182

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  +++ +L     ++  I + +   + G+I+R G    I+G  N GKSS
Sbjct: 183 NIDYPEYDDVEELTTRLLLEKANQVQKQIQALLQTAQQGKILREGLSTAIIGRPNVGKSS 242

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVEK G++R+  
Sbjct: 243 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLVDTAGIRETEDIVEKIGVERSRK 302

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYS--------TYTEEYD 340
            +  ADLILL+           K+ +        I +  K+DL S         Y E   
Sbjct: 303 ALSEADLILLVLNQSESLTTEDKQLLDITSGNKRIILLNKTDLPSRINQEDLVPYLENEP 362

Query: 341 HL-ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLN 396
            L IS  T EGL++L   I  +    N   K   S  S+ RH+  L +    L E+    
Sbjct: 363 ALPISVLTSEGLDQLEQAIADLFFGGNTGDK-DASYLSNTRHIALLEKAEHSLAEVIQGI 421

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E    +D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 422 ESGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|302380979|ref|ZP_07269440.1| tRNA modification GTPase TrmE [Finegoldia magna ACS-171-V-Col3]
 gi|303234699|ref|ZP_07321327.1| tRNA modification GTPase TrmE [Finegoldia magna BVS033A4]
 gi|302311200|gb|EFK93220.1| tRNA modification GTPase TrmE [Finegoldia magna ACS-171-V-Col3]
 gi|302494182|gb|EFL53960.1| tRNA modification GTPase TrmE [Finegoldia magna BVS033A4]
          Length = 452

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 154/454 (33%), Positives = 259/454 (57%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILD 62
           + I A+S+    + I I+R++G  C  V + + K+        + +  +G    D  I+D
Sbjct: 3   DCIAAISSATGEAGIGIVRMTGEGCADVLDSVFKRANDNADFINRKMTYGHIVDDNEIVD 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+    +P ++T ED  E + HGG+  V  +LE L      RLA  GEF++RAF NG+
Sbjct: 63  EVLVCYMKAPHTYTREDVVEIYTHGGVVAVRKVLEVLLN-NGARLAEAGEFTKRAFLNGR 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AE++ D+I ++T+    +SM+ + G ++    Q  DKL  + S +E  ++F+E  
Sbjct: 122 IDLSQAEAIIDMIKAKTDKAYSVSMKQLEGSVNRNIKQLRDKLLDMLSHVEYSINFTE-- 179

Query: 183 DVQN-FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           D+Q+   +  VLN+   + + +         G IIR+G    I+G  N GKSSL NAL K
Sbjct: 180 DMQDELDNTPVLNEGKEVLDKLKKLSESANRGRIIRDGINTTIIGKPNVGKSSLLNALLK 239

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDIPGTTRDV+   +DL+G  +KI+DTAGIR+T+DIVEK G++++   + ++DL
Sbjct: 240 ENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAGIRDTEDIVEKIGVEKSVSFISDSDL 299

Query: 302 ILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYT-----EEYDHLISSF-TGE 349
           I+ +    +E +   +K +   ++   I +  K DL   +      E  + + +S    E
Sbjct: 300 IIAIFDSSREFDDEDRKILDLIRDKKSIVLLNKIDLDGEFDVDENLEGIEVIHTSIKNNE 359

Query: 350 GLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIA 406
           G+E+L NKI  + ++ + +    +I ++ RH   +++ ++ LE +SL++ + G  +D   
Sbjct: 360 GIEDLENKIIEMFNDGYIEANNDNIITNIRHRDIINKAIKSLE-SSLHDMEAGVPIDCFE 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LR A   LG+ITG    + +L+ IFS FCIGK
Sbjct: 419 VDLRNAWEILGEITGETVDDDVLNKIFSDFCIGK 452


>gi|313890071|ref|ZP_07823706.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121432|gb|EFR44536.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 458

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 149/464 (32%), Positives = 256/464 (55%), Gaps = 32/464 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG    ++   + K K      AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALKIANTVFKGKN-LHEVASHTINYGHIINP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +  ILD+ ++ V  +P++FT E+  E + HGGIAV N IL+ L K    R+A PGEF++
Sbjct: 62  DNQEILDEVMVTVMLAPKTFTRENVIEINTHGGIAVTNEILQLLIKQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINNTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQQFQALLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVERSKKV 300

Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
           ++ ADL+LL+  +N+ + ++          +  + + +  K+DL      E D L S   
Sbjct: 301 LKEADLVLLV--LNASEPLTTQDRLLLELSQETNRLILLNKTDLPEKI--ETDQLPSDLV 356

Query: 348 GEGLEELINKIKSILSNKFKKLPF----------SIPSHKRHLYHLSQTVRYLEMASLN- 396
              +  L NK   ++ ++  +L F          +  S+ RH+  + Q ++ L+  +   
Sbjct: 357 --PISVLQNKNIDMIEDRINQLFFDNAGLVEQDATYLSNARHISLIEQALQSLQAVNDGL 414

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E D  +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 415 EMDMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|302510559|ref|XP_003017231.1| hypothetical protein ARB_04108 [Arthroderma benhamiae CBS 112371]
 gi|291180802|gb|EFE36586.1| hypothetical protein ARB_04108 [Arthroderma benhamiae CBS 112371]
          Length = 578

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/326 (38%), Positives = 188/326 (57%), Gaps = 35/326 (10%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR 59
           ++ +  TI+A+ST    +AI+IIR+SGP C  +   +C  +K P PR A+LR  +     
Sbjct: 24  LDEKPTTIYALSTAPGRAAIAIIRISGPDCIPIYNALCPNRKLPKPRFAALRTIYEPGKP 83

Query: 60  I-----LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP--------NL 105
           +     LD G L+  FP+P + TGED  E HVHGG AV+  IL  + K          ++
Sbjct: 84  VSADNALDSGALVFHFPAPNTVTGEDVLELHVHGGPAVIKSILSAIPKCATPGDAPSASI 143

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           R A PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G +  LS+ Y QW  +L
Sbjct: 144 RYAEPGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDTLSTRYEQWRKQL 203

Query: 166 THIRSFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
            + R  +EA +DFSE+    E V +F S  V   +  L + I+ HI     GE++R+G K
Sbjct: 204 LYARGELEALIDFSEDQHFDESVDDFISS-VTGQVDSLLHQINLHIENASKGELLRSGIK 262

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + +LG  NAGKSSL N +  +D AIV+   GTTRD++ + +DL G+L K  D AG+R   
Sbjct: 263 VALLGAPNAGKSSLLNQIVGRDAAIVSSEEGTTRDIVDVGIDLGGWLCKFGDMAGLRSKL 322

Query: 279 ------------ETDDIVEKEGIKRT 292
                        T   +E+EGI+R 
Sbjct: 323 SQSQIAAQGHVVSTVGKIEEEGIRRA 348


>gi|257888103|ref|ZP_05667756.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,141,733]
 gi|257896278|ref|ZP_05675931.1| tRNA modification GTPase mnmE [Enterococcus faecium Com12]
 gi|293379359|ref|ZP_06625503.1| tRNA modification GTPase TrmE [Enterococcus faecium PC4.1]
 gi|257824157|gb|EEV51089.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,141,733]
 gi|257832843|gb|EEV59264.1| tRNA modification GTPase mnmE [Enterococcus faecium Com12]
 gi|292641882|gb|EFF60048.1| tRNA modification GTPase TrmE [Enterococcus faecium PC4.1]
          Length = 465

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 156/469 (33%), Positives = 266/469 (56%), Gaps = 42/469 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDGR 59
           E +TI A+ST     AISI+RLSG    Q+ + +     K+    P   ++ Y   +D +
Sbjct: 7   EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYHSGNKRLSEVPSH-TIHYGHIVDPK 65

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++R
Sbjct: 66  SDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++
Sbjct: 125 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL 
Sbjct: 185 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 244

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +
Sbjct: 245 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 304

Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-YDHL------- 342
             ADLILL+    + + ++ E  +   K +  I +  K+DL +   +E  + L       
Sbjct: 305 AEADLILLVLNQSEPLTAEDEQLLEATKGLKRIILLNKTDLPAQLEQEKLNKLIENEPVF 364

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398
            IS    +GL+ L    +S +S+ F    FS  + +R   ++S T  +  LE ASL+ + 
Sbjct: 365 SISVAKNDGLDHL----ESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 416

Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                D G+  D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 417 VIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465


>gi|325265449|ref|ZP_08132172.1| tRNA modification GTPase TrmE [Clostridium sp. D5]
 gi|324029307|gb|EGB90599.1| tRNA modification GTPase TrmE [Clostridium sp. D5]
          Length = 470

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 164/473 (34%), Positives = 247/473 (52%), Gaps = 42/473 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDG-RIL 61
           K+TI A+STG   S I I+R+SG   FQV + I   K      +  ++ Y F  DG   +
Sbjct: 3   KDTIAAISTGMSNSGIGIVRISGAEAFQVIDRIYTGKDRLLEAKSHTIHYGFIKDGGETV 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+++   P +FTGED+ E + HGG  VV  +LE + K    R A PGEF++RAF NG
Sbjct: 63  DEVLVMLMRGPRTFTGEDTVEINCHGGTYVVKRVLETVIK-NGARPAEPGEFTKRAFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++  +I+S+ E   + S+  + G +        +K+ +  +FIE  LD  E 
Sbjct: 122 KMDLSQAEAVIGVITSKNEYALQCSISQLKGSVKKKIEDIRNKIVYHTAFIETALDDPEH 181

Query: 182 EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            ++  +    K V++DIL    +I   I     G I++ G + VI G  NAGKSSL N L
Sbjct: 182 IEIDGYGETLKSVIDDILV---EIGKLIESSDSGRIMKEGIQTVIAGKPNAGKSSLLNVL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A ++ AIVTDI GTTRD L   + L G  + + DTAGIRETDDI+EK G+ +    V+NA
Sbjct: 239 AGRERAIVTDIEGTTRDALEEQIQLNGLTLNMVDTAGIRETDDIIEKMGVDKARDYVKNA 298

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLISSFTG 348
           DLI+ + +       N +  I        I +  KSDL +  T+E       ++++    
Sbjct: 299 DLIIYVADASRPLDKNDEDIIRLTAGKKCIILLNKSDLETVITKEILQNKIKNILNETEN 358

Query: 349 EGL--------------EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA- 393
           EG+              E+ + + + IL+  F K   S  + + ++ ++ Q     +   
Sbjct: 359 EGINSIYIPMIDISAKEEQGLQEFEDILNTMFLKGEVSF-NDEVYITNIRQKAALRDACE 417

Query: 394 SLN------EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           SLN      +     D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 418 SLNKVIESIDNQMPEDFFSIDLMDAYESLGSITGETIGEDLVNEIFSKFCMGK 470


>gi|307709441|ref|ZP_07645898.1| tRNA modification GTPase TrmE [Streptococcus mitis SK564]
 gi|307619755|gb|EFN98874.1| tRNA modification GTPase TrmE [Streptococcus mitis SK564]
          Length = 457

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 150/461 (32%), Positives = 263/461 (57%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F + + I + K    + AS  L Y   +D 
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTESFAIAQKIFEGKD-LNQVASHTLNYGHIVDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+   +++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMKIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGIPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLIS 344
           ++ ADL+LL+   +       ++ +   +  + I +  K+DL      S   E+    IS
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQETNRIILLNKTDLPEAIETSKLPEDVIR-IS 358

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCG 401
               + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  ++NE  + G
Sbjct: 359 VLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELG 416

Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 417 MPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|322374354|ref|ZP_08048868.1| tRNA modification GTPase TrmE [Streptococcus sp. C300]
 gi|321279854|gb|EFX56893.1| tRNA modification GTPase TrmE [Streptococcus sp. C300]
          Length = 457

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 148/458 (32%), Positives = 257/458 (56%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS  L Y   +D 
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIIDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIR+TDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGVERSRKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345
           ++ ADL+LL+   +       ++ +   +  + I +  K+DL  +  T E       IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQVTNRIILLNKTDLPEAIETSELPEDIIRISV 359

Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++++  +I  +   +    +   +  S+ RH+  + + V  L+  +   E    +
Sbjct: 360 LKNQNIDKIEERINDLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|313887368|ref|ZP_07821058.1| tRNA modification GTPase TrmE [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923136|gb|EFR33955.1| tRNA modification GTPase TrmE [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 470

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 157/481 (32%), Positives = 256/481 (53%), Gaps = 52/481 (10%)

Query: 1   MNHE-KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           M H+  ETI A +T AL   +++IR+SG    Q+ E +  K+   PR+A+      +DG+
Sbjct: 1   MIHDLSETICAPAT-ALGGGLAVIRISGSLAPQIAERLLGKRLA-PREAT-TAGLRIDGQ 57

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D  +   F +P S+TGE+  E   H    +V  ILE +A+    R+A+PGEF+RRA  
Sbjct: 58  LIDLVVATYFAAPHSYTGEEVVELSCHASPYIVRSILEWIAQQEGCRMADPGEFTRRALA 117

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           +GK+DL EAE++ADLI++ T  Q +++ME  +G LS L  +    L      +E +LDFS
Sbjct: 118 HGKLDLAEAEAVADLIAATTATQHKMAMEQHTGRLSHLLNELRATLLRFAGLLELELDFS 177

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            EEDV       ++  +  +++ +         G+ ++ G    I+G  N GKSSL NAL
Sbjct: 178 -EEDVAFADRSTLVETLATIQHQLRLLTQSFSTGQELQQGIPTAIIGAPNVGKSSLLNAL 236

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            + + AIV+DIPGTTRD +   L + G L ++ DTAG+R+T D+VE+ GI+R++ ++ +A
Sbjct: 237 LQHERAIVSDIPGTTRDTVEGRLTIRGTLFRLIDTAGLRQTTDLVEQLGIERSYQQISSA 296

Query: 300 DLILLL------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342
            LIL +             +++    ++ P +   I +  K DL  T  E  D L     
Sbjct: 297 RLILWVIAPPLPTWDELEAQLSEILRLTSPDSTLIILLN-KRDLL-TEREVTDWLSNCSS 354

Query: 343 ----------------ISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRHLYH 382
                           IS+   +G+E L    ++  +++ S++   + +++    RH   
Sbjct: 355 LLQRTNGKPHTTSPLAISARAAQGIEALEELMVSSTQTLHSDEETVMLYNL----RHYEA 410

Query: 383 LSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIG 439
           L++  R LE+ S    + GL  D+I   LR A   +G +TG  +  +++L  IFS FCIG
Sbjct: 411 LTKASRALELVSEGLHN-GLTSDLITPYLREAIEEIGLVTGASITSDEVLGFIFSHFCIG 469

Query: 440 K 440
           K
Sbjct: 470 K 470


>gi|289579530|ref|YP_003478157.1| tRNA modification GTPase TrmE [Thermoanaerobacter italicus Ab9]
 gi|289529243|gb|ADD03595.1| tRNA modification GTPase TrmE [Thermoanaerobacter italicus Ab9]
          Length = 460

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 167/467 (35%), Positives = 251/467 (53%), Gaps = 42/467 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGLD- 57
           +TI A+ST    + I I+R+SG       E I K  KP+  K        +L Y   +D 
Sbjct: 4   DTIAAISTFPGEAGIGIVRISGDDAL---EIISKIFKPYKAKDIKKVKSHTLHYGHIVDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               I D+ L+ +   P ++T ED  E + HGGI + + ILE + K    RLA PGEF++
Sbjct: 61  ETQEIYDEVLVSIMKKPNTYTREDIVEINCHGGIVITSKILELVLKQ-GARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I+++T +  + + + ++G + S   +  DK+  +   + A 
Sbjct: 120 RAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLAGYVGSRIKEMKDKIMGLLVHLLAL 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF EE DV+    KE+L     +  DI   I   + G IIR G K  I+G  N GKSSL
Sbjct: 180 IDFPEE-DVEELERKEMLETAKEIVEDIDKLIVSSESGRIIREGLKTAIIGKPNVGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G++R+   
Sbjct: 239 LNALLKENRAIVTDIPGTTRDIIEEYINVKGIPIKLIDTAGIRDTDELVEKIGVERSKEV 298

Query: 296 VENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDLYSTYTEE------Y 339
           +  ADLIL +  +++ +E+S            KNI  IF+  K DL     E        
Sbjct: 299 LAEADLILFV--LDASRELSEEDYQIFDILTEKNI--IFVLNKIDLPKKIDESKLKSLIK 354

Query: 340 DHLI---SSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
           D +I   S+    GLE+L N I   +           I  + RH   L    +Y+E + +
Sbjct: 355 DGIIIEVSTVERIGLEKLENAIYDLVFRGDINLREEEIIINSRHKEALINAKKYME-SCV 413

Query: 396 NEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              + G   D+I  +L  A   LGKITG    E L++ IF +FC+GK
Sbjct: 414 KAIEMGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 460


>gi|49487489|ref|YP_044710.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|73919890|sp|Q6G5W4|MNME_STAAS RecName: Full=tRNA modification GTPase mnmE
 gi|49245932|emb|CAG44413.1| probable tRNA modification GTPase [Staphylococcus aureus subsp.
           aureus MSSA476]
          Length = 459

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 152/462 (32%), Positives = 252/462 (54%), Gaps = 33/462 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62
           +TI ++ST     AI I+RLSGP   ++ + + K K       S    +G    I+D   
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYG---HIIDPES 60

Query: 63  -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
                + ++ V  +P++FT ED  E + HGGI  +N +LE L      R+A PGEF++RA
Sbjct: 61  KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D
Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVEK G++R+   + 
Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI----- 343
            ADLIL +  +N+ + ++          KN D I I  K DL       E   +I     
Sbjct: 300 QADLILFV--LNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPL 357

Query: 344 ---SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398
              S    EG++EL  +I+ +    + +    +  S+ RH+  L Q  + ++ A    E 
Sbjct: 358 IQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAES 417

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 418 GVPMDMVQIDLTRIWEILGEIIGETASDELIDQLFSQFCLGK 459


>gi|297545652|ref|YP_003677954.1| tRNA modification GTPase TrmE [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843427|gb|ADH61943.1| tRNA modification GTPase TrmE [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 462

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 167/467 (35%), Positives = 251/467 (53%), Gaps = 42/467 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGLD- 57
           +TI A+ST    + I I+R+SG       E I K  KP+  K        +L Y   +D 
Sbjct: 6   DTIAAISTFPGEAGIGIVRISGDDAL---EIISKIFKPYKAKDIKKVKSHTLHYGHIVDP 62

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               I D+ L+ +   P ++T ED  E + HGGI + + ILE + K    RLA PGEF++
Sbjct: 63  ETQEIYDEVLVSIMKKPNTYTREDIVEINCHGGIVITSKILELVLKQ-GARLAEPGEFTK 121

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I+++T +  + + + ++G + S   +  DK+  +   + A 
Sbjct: 122 RAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLAGYVGSRIKEMKDKIMGLLVHLLAL 181

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF EE DV+    KE+L     +  DI   I   + G IIR G K  I+G  N GKSSL
Sbjct: 182 IDFPEE-DVEELERKEMLETAKEIVEDIDKLIVSSESGRIIREGLKTAIIGKPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G++R+   
Sbjct: 241 LNALLKENRAIVTDIPGTTRDIIEEYINVKGIPIKLIDTAGIRDTDELVEKIGVERSKEV 300

Query: 296 VENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDLYSTYTEE------Y 339
           +  ADLIL +  +++ +E+S            KNI  IF+  K DL     E        
Sbjct: 301 LAEADLILFV--LDASRELSEEDYQIFDILTEKNI--IFVLNKIDLPKKIDESKLKSLIK 356

Query: 340 DHLI---SSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
           D +I   S+    GLE+L N I   +           I  + RH   L    +Y+E + +
Sbjct: 357 DGIIIEVSTVERIGLEKLENAIYDLVFRGDINLREEEIIINSRHKEALINAKKYME-SCV 415

Query: 396 NEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              + G   D+I  +L  A   LGKITG    E L++ IF +FC+GK
Sbjct: 416 KAIEMGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 462


>gi|169825321|ref|YP_001692932.1| tRNA modification GTPase [Finegoldia magna ATCC 29328]
 gi|205829141|sp|B0S3V2|MNME_FINM2 RecName: Full=tRNA modification GTPase mnmE
 gi|167832126|dbj|BAG09042.1| tRNA modification GTPase [Finegoldia magna ATCC 29328]
          Length = 452

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 154/454 (33%), Positives = 259/454 (57%), Gaps = 23/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILD 62
           + I A+S+    + I I+R++G  C  V + + K+        + +  +G    D  I+D
Sbjct: 3   DCIAAISSATGEAGIGIVRMTGEGCADVLDSVFKRANDKADFINRKMTYGHIVDDNEIVD 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+    +P ++T ED  E + HGG+  V  +LE L      RLA  GEF++RAF NG+
Sbjct: 63  EVLVCYMKAPHTYTREDVVEIYTHGGVVAVRKVLEVLLN-NGARLAEAGEFTKRAFLNGR 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AE++ D+I ++T+    +SM+ + G ++    Q  DKL  + S +E  ++F+E  
Sbjct: 122 IDLSQAEAIIDMIKAKTDKAYSVSMKQLEGSVNRNIKQLRDKLLDMLSHVEYSINFTE-- 179

Query: 183 DVQN-FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           D+Q+   +  VLN+   + + +         G IIR+G    I+G  N GKSSL NAL K
Sbjct: 180 DMQDELDNTPVLNEGKEVLDKLKKLSESANRGRIIRDGINTTIIGKPNVGKSSLLNALLK 239

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDIPGTTRDV+   +DL+G  +KI+DTAGIR+T+DIVEK G++++   + ++DL
Sbjct: 240 ENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAGIRDTEDIVEKIGVEKSVSFISDSDL 299

Query: 302 ILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYT-----EEYDHLISSF-TGE 349
           I+ +    +E +   +K +   ++   I +  K DL   +      E  + + +S    E
Sbjct: 300 IIAIFDSSREFDDEDRKILDLIRDKKSIVLLNKIDLDGEFDVDENLEGIEVIHTSIKNNE 359

Query: 350 GLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIA 406
           G+E+L NKI  + ++ + +    +I ++ RH   +++ ++ LE +SL++ + G  +D   
Sbjct: 360 GIEDLENKIIEMFNDGYIEANNDNIITNIRHRDIINKAIKSLE-SSLHDMEAGVPIDCFE 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LR A   LG+ITG    + +L+ IFS FCIGK
Sbjct: 419 VDLRNAWEILGEITGETVDDDVLNKIFSDFCIGK 452


>gi|288573317|ref|ZP_06391674.1| tRNA modification GTPase TrmE [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569058|gb|EFC90615.1| tRNA modification GTPase TrmE [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 456

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 152/462 (32%), Positives = 243/462 (52%), Gaps = 36/462 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LD--GRI 60
           +TI A+ST    + ISIIR+SGP  F   + + +   P P K   R  +    LD  G  
Sbjct: 4   DTIAAISTAWGDAGISIIRMSGPDAFDFAKSLVRTFTP-PEKMKYRIMYNGSLLDESGGP 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL++F +P+S+TGED AE H HGG  V    LE   +    R A+PGEF+RRA+EN
Sbjct: 63  IDQVLLVLFQAPKSYTGEDLAEIHCHGGSLVAQRCLERCLQK-GCRHADPGEFTRRAYEN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++  +I + +    R +   + GELS    +  D+L  + + +E  +DF E
Sbjct: 122 GRLDLSQAEAVNGIIHARSNEALRAANRTLQGELSRFVREIYDELLGLSAELEVGIDFPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV     ++V + +  L  D+   + +   G ++R G ++ ++G  N GKSSL NAL 
Sbjct: 182 E-DVPYIEDQDVSDRMETLIQDLGDLLDRCTTGYLLREGIRVALVGRPNVGKSSLLNALL 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENA 299
           ++  AIVT IPGTTRDV+      +G  +++ DTAG+RET  D VE  GI+RT   ++ +
Sbjct: 241 RESRAIVTSIPGTTRDVIEEVFTHKGIPLRLMDTAGLRETPSDEVEAMGIERTAKAIDES 300

Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
           D++L               L ++++ K  I      D      ++D+     E +   IS
Sbjct: 301 DVVLWILDGSEPLEIPDRPLTEKLSGKPHIVALNKSDLPKAFDETDIAKLLPESWVIRIS 360

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD- 403
           +    GL+EL   I  ++S     L   + +  R +  + + +      SL +    LD 
Sbjct: 361 AQEKRGLDELKEAIVDLVSGT-GTLDAGLNATARQVEEIREAIE-----SLTDGKGALDS 414

Query: 404 -----IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                + A ++R A  +L ++ G  D E LLD++FS+FC+GK
Sbjct: 415 YSDQTLAASSIREARSALERLLGLQDDEALLDLVFSRFCVGK 456


>gi|156048568|ref|XP_001590251.1| hypothetical protein SS1G_09015 [Sclerotinia sclerotiorum 1980]
 gi|154693412|gb|EDN93150.1| hypothetical protein SS1G_09015 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 502

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 152/488 (31%), Positives = 242/488 (49%), Gaps = 86/488 (17%)

Query: 33  VCEFICKKKK-PFPRKASLRYFF---GLDGRILDK-GLLIVFPSPESFTGEDSAEFHVHG 87
           + + +C  K  P PR A++R  +        ILD   L++ FP+P++ TGED  E HVHG
Sbjct: 21  IYQSLCPSKPIPKPRYAAVRTLYEPLAPTRNILDSDALVLYFPAPKTVTGEDVLELHVHG 80

Query: 88  GIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRR 144
           G A V  +L  + +  +   +R A PGEF+RRAF+N ++DL + E+L+D +S+ETE QRR
Sbjct: 81  GSATVKAVLSAIPQCTSPAKIRYAEPGEFTRRAFQNNRLDLAQVEALSDTLSAETEQQRR 140

Query: 145 LSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN---DILFLKN 201
            ++ G SG L   Y  W  +L + R  +EA +DFSE++      ++ + N    +  +  
Sbjct: 141 AAVRGTSGNLGRTYEAWRQQLLYARGELEALIDFSEDQHFDESPAELLWNVTAQVEVMLE 200

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            I++H S    GE+++ G +I +LG  NAGKSSL N +  ++ +IV+   GTTRD++ + 
Sbjct: 201 SIAAHESASHRGELLKKGIRISLLGPPNAGKSSLLNQIVGREASIVSQEAGTTRDIVEVS 260

Query: 262 LDLEGYLVKISDTAGIR---------ETDDI---VEKEGIKRTFLEVENADLILLL---- 305
           LD+ GYL   +DTAG+R         + D I   +E+EGI+R   +   +D+++ L    
Sbjct: 261 LDIRGYLCTFADTAGLRTQVSPSESGKNDSIIGHIEQEGIRRAKAKANESDVVIALASIE 320

Query: 306 -KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS---- 360
             +I +  EI +  +I+   I  K+        + D    S T E L ELIN  K     
Sbjct: 321 WSDIRNGWEIRY--DIETFEIAAKAPKSMIAINKSD----SVTPEILSELINDFKKSQID 374

Query: 361 -ILSN---------------------------------KFKKLP------FSIPSHKRHL 380
            I  N                                     LP        +   +R L
Sbjct: 375 IITENVVPLMTISCKNAQASSSQGSIGHFIDEMVKVFENMTSLPTDLEDLLGVTERQRQL 434

Query: 381 Y-----HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG---CVDVEQLLDII 432
                 HL    +  ++   +E++  + + AE+LR A+  L +ITG     DVE++L ++
Sbjct: 435 LAACSAHLLDFTKEAQLQVDDEREVDIVLAAEHLRSAANCLSRITGRGEAGDVEEVLGVV 494

Query: 433 FSKFCIGK 440
           F KFC+GK
Sbjct: 495 FEKFCVGK 502


>gi|126324169|ref|XP_001370184.1| PREDICTED: similar to mitochondrial GTP binding protein 2
           [Monodelphis domestica]
          Length = 429

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 146/441 (33%), Positives = 217/441 (49%), Gaps = 52/441 (11%)

Query: 5   KETIFAVSTGALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILD 62
           + TIFA+S+G     +++IR SGP S   V      +  P PR A LR     +    LD
Sbjct: 36  RATIFALSSGQGKCGVAVIRTSGPASGPAVLGLAALRALPQPRLAKLRLLKHPVSSEPLD 95

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +GL++ FP P SFTGED AEFHVHGG AVV+ +L  L  +P  R A  GEF++RAF+NGK
Sbjct: 96  RGLVLWFPGPHSFTGEDCAEFHVHGGPAVVSAVLGALGGVPGCRPAEAGEFTKRAFQNGK 155

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           + L E E L DLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DFSE++
Sbjct: 156 LSLTEVEGLGDLIHAETEAQRRQALRQLQGELGQLCRAWGETLTTALAHLEAYIDFSEDD 215

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +++    + V   +  L+  + +H+   + G+ +R+G  +VI G +NAGKSSL N L ++
Sbjct: 216 NIEEGVLEWVDGTVQGLREALEAHLQDARRGQRLRSGAHVVIAGPANAGKSSLINLLTRQ 275

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
                     +T+         +G +V   D +               R  L +  AD  
Sbjct: 276 P---------STKGPAQGHAASQGTVVTPGDPS------------ASPRILLVLNKAD-- 312

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
            LL +  +    + P ++                     L+S  T  GLE ++  +K  L
Sbjct: 313 -LLPKGGAPGGATLPPHL---------------------LLSCKTEAGLEAVLAALKKEL 350

Query: 363 SNKFKKLPFSIP--SHKRHLYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKI 419
           +          P  +  RH +HL   +  L        +D  L + AE LR A   LG +
Sbjct: 351 AAVCGDPTVGPPVLTRARHRHHLQSCLEALRGYGRSRARD--LALAAEELREARRQLGHL 408

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG    +Q+L++IF  FCIGK
Sbjct: 409 TGQGRPDQILEVIFRDFCIGK 429


>gi|89897893|ref|YP_515003.1| tRNA modification GTPase TrmE [Chlamydophila felis Fe/C-56]
 gi|123483931|sp|Q256D0|MNME_CHLFF RecName: Full=tRNA modification GTPase mnmE
 gi|89331265|dbj|BAE80858.1| tRNA modification GTPase trmE [Chlamydophila felis Fe/C-56]
          Length = 443

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 236/453 (52%), Gaps = 28/453 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           + +TI A++T     +I+I+R+SGP   Q+ + I     P P  AS     G     GR 
Sbjct: 3   KNDTIAAIATPPGEGSIAIVRVSGPEAIQITDKIFSG--PVPSFASHTAHLGTASHHGRQ 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL++  +P SFTGED  E   HGG    + ILE L      R A PGEFS+RAF N
Sbjct: 61  IDQVLLLIMRAPRSFTGEDVVELQCHGGYFSCSQILEALVSE-GARPALPGEFSQRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL++AE++ +LI+++      ++     G  S    +    +    +FIE   DF E
Sbjct: 120 GKIDLIQAEAIQNLIAADNLDAFHIAQNHFQGHFSQRVQKISSLIIESLAFIEVLADFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE       ++ LN+ L +  D+ S   +G+    +  G  IV+ GH NAGKSSL NAL 
Sbjct: 180 EEQPDMEVPEKRLNEALVIIEDLISSFDEGQR---LAQGTSIVLAGHPNAGKSSLLNALT 236

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDIPGTTRD+L     L+G  +++ D+AG RETD+ VE+EGI+R    ++ A+
Sbjct: 237 NRNRAIVTDIPGTTRDILEESWTLQGKRIRLIDSAGQRETDNPVEQEGIERAISAMKQAE 296

Query: 301 LILLLKEINSK----KEISFPKNIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEGLEE 353
            IL + +         EI F K    + +  KSDL S     T      IS+ TG+G+ E
Sbjct: 297 GILWVMDATQPPPPLPEILFQK--PSLLLWNKSDLASPPRIDTSLPQLAISAKTGDGILE 354

Query: 354 LINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-----DIIAE 407
           L   I K I   +  K         RH   L Q   YL    L+ K+  L     +++A 
Sbjct: 355 LKQFIQKWIQKQQLGKNSKVFLVSARHHTILQQIRTYL----LSAKEGLLSQLPPELVAL 410

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR A  + G ++G    E +L  IFS+FCIGK
Sbjct: 411 ELRQALQTTGNLSGSEINETILGEIFSRFCIGK 443


>gi|317968166|ref|ZP_07969556.1| tRNA modification GTPase TrmE [Synechococcus sp. CB0205]
          Length = 449

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 148/442 (33%), Positives = 245/442 (55%), Gaps = 31/442 (7%)

Query: 19  AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPS 71
           ++SI+R+SGP    + E  F    ++ +    S R  +G       G  +D+ LL++  +
Sbjct: 19  SVSIVRISGPEAEAIGERLFEAPGQQVWE---SHRVLYGHVRDPGSGERVDEALLLLMRA 75

Query: 72  PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131
           P SFT E   E H HGG+  V  +LE L      R A PGEFS+RAF NG++DL  AE++
Sbjct: 76  PRSFTRETVVELHCHGGVISVQRVLE-LVLAAGARRALPGEFSQRAFLNGRLDLTRAEAI 134

Query: 132 ADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           ++L+++ +    +L+M G+ G    ++S L  + +D+L  +    EA +DF  E+D+   
Sbjct: 135 SELVTARSRRAAQLAMAGLDGGLERQISGLRLRLLDQLAEL----EARVDF--EDDLPPL 188

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             + V +++  +++ +   ++ G+ G+++R G K+ I+G  N GKSSL N L++ D AIV
Sbjct: 189 DGQAVASELQAVRSALQELVADGERGQVLREGLKVAIVGRPNVGKSSLLNLLSRSDRAIV 248

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           TD+PGTTRD++  +L L+G  + + DTAGIR+T+D VE+ GI+R+   ++ AD++LLL +
Sbjct: 249 TDLPGTTRDLVESELVLKGVPLTLLDTAGIRDTEDRVEQIGIERSRGALQAADVVLLLFD 308

Query: 308 I-------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKIK 359
                   +     S P+ I  + +  K+D  +     + D  IS+ TGEG E L++++ 
Sbjct: 309 RAQGWLAEDQALLASLPQGIPHLVVANKADQPAAEPAAHADVCISALTGEGHEALVDRLL 368

Query: 360 SILSNKFKKLPFSIPSHKRHL-YHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
                  ++    +  ++R L   +S            E+    D    +LR A  SLG+
Sbjct: 369 QSCGQGGEQ-GLQVALNRRQLDLAVSAAASLQRTLEAGEQQLPWDFWTIDLRAAVRSLGE 427

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           ITG    E +LD IFS+FCIGK
Sbjct: 428 ITGAEVTEAVLDRIFSRFCIGK 449


>gi|328952573|ref|YP_004369907.1| tRNA modification GTPase mnmE [Desulfobacca acetoxidans DSM 11109]
 gi|328452897|gb|AEB08726.1| tRNA modification GTPase mnmE [Desulfobacca acetoxidans DSM 11109]
          Length = 456

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 148/458 (32%), Positives = 240/458 (52%), Gaps = 24/458 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGL-----D 57
           ++ TI A+ST      I I+RLSGP    + + I +  +P  P   + R   G      D
Sbjct: 2   KRHTIAAISTPPGEGGIGIVRLSGPDSRAIADRIFRPARPHTPTWPARRLILGQIVSPED 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+ +D+ LL   P P S+T ED  E   H G AV+  IL+ L      RLA+PGEF+ RA
Sbjct: 62  GQAVDEVLLAFMPRPHSYTREDVIEIQCHSGYAVLQRILQ-LTLQAGARLADPGEFTLRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F +G++DL +AE++ ++I + ++   R++   ++G L     +  D L  + + +EADLD
Sbjct: 121 FLSGRLDLTQAEAVLEVIQARSDASLRVAAAHLAGGLGRHLTRLRDDLLDLLALVEADLD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EE  V       +++ +  L+++I++       G ++R G ++V+ G  N GKSSL N
Sbjct: 181 FGEE--VPEIDLAALVHQLEALESEITALCQSYAQGRMLRQGLQVVLAGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTDIPGTTRDV+  +L ++G  V + DTAG+R   ++VE+ GI+RT   ++
Sbjct: 239 RLLQTDRAIVTDIPGTTRDVIAENLVIQGLPVCLLDTAGLRPAQNLVEEIGIQRTQEHLQ 298

Query: 298 NADLILLL------KEINSKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHL---I 343
            ADL+L L       ++  + ++   ++   + +  K DL      +     + H    I
Sbjct: 299 QADLVLYLLDASQPWQVEDEPQLQALRDQSILVVLNKIDLPRVLQPAAIPSAWPHHLIEI 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
           S+ TGEG+  L   I          L   I +  RH  HL     +L+ A  + +     
Sbjct: 359 SALTGEGIPALKEAIFQAGMGGASPLDGQIVTQARHCRHLEHCRHHLQGAWKIIQTAQPR 418

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++A  LR A   L  I G    +++LD +F++FC+GK
Sbjct: 419 ELLALELRSALQELSAILGLEVDDEVLDRVFARFCLGK 456


>gi|149193806|ref|ZP_01870904.1| tRNA modification GTPase TrmE [Caminibacter mediatlanticus TB-2]
 gi|149135759|gb|EDM24237.1| tRNA modification GTPase TrmE [Caminibacter mediatlanticus TB-2]
          Length = 443

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 152/446 (34%), Positives = 244/446 (54%), Gaps = 15/446 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T     AISI+R+SG +  ++ + + KK    PR A L   +  +  ++D  L
Sbjct: 2   ETIAAIATPNGVGAISIVRVSGDNALEIAKKLTKKDDFPPRVAKLCKVYDSNDELIDIAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF  HGG+ V   ILEE+ K  N RLANPGEF++RA  NGKID 
Sbjct: 62  VIYFKAPNSFTGEDIVEFQCHGGVVVSKFILEEVLKH-NCRLANPGEFTKRALLNGKIDA 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++A LI + +    +L    + GELS    +  +KL  I ++ E  +D++EE D+ 
Sbjct: 121 SQAEAIAKLIETRSREGAKLLSRQLEGELSKFVEEVREKLIEIMAYSEVFIDYAEE-DLP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
               K++   +  ++  +   +   K  E I +GYK+ I+G  N GKSS+ N L  K  A
Sbjct: 180 ESLGKDIEERLKNIEALLKKTLEASKRREGILSGYKVAIVGKPNVGKSSILNKLLNKQRA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+DI GTTRD +  D+ +  +L++I DTAGIR   D +EK G++R+   ++ AD++L +
Sbjct: 240 IVSDIAGTTRDTIEEDIQIGSHLIRIIDTAGIRAAKDEIEKIGVERSKESIKKADIVLAV 299

Query: 306 ---KEINSKKE--ISFPKNI--DFIFIGTKSD----LYSTYTEEYDHLISSFTGEGLEEL 354
               E N + E  +   KN+  D I +  K D    +   Y + +  ++     E +  L
Sbjct: 300 FDGSEFNKEDEEILDLIKNLDKDVIIVINKVDKGIKINLNYFKNF-KIVKISAKEDITPL 358

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
           I K+K IL + F      I    R +  + + +  +  A    K   L++ + +++ A  
Sbjct: 359 IEKLKEIL-DSFSSEDEHILISTRQISAVQKALNSIYEAKEFLKTGELELFSYHIQDAIR 417

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +IT   + +++LD +FS FC+GK
Sbjct: 418 FISEITKPFEYDEMLDKMFSSFCVGK 443


>gi|306829480|ref|ZP_07462670.1| tRNA modification GTPase TrmE [Streptococcus mitis ATCC 6249]
 gi|304428566|gb|EFM31656.1| tRNA modification GTPase TrmE [Streptococcus mitis ATCC 6249]
          Length = 457

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 150/460 (32%), Positives = 261/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS  L Y   +D 
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIVQKIFKGKD-LSKVASHTLNYGHIVDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++    SP++FT ED  E + HGGIAV N IL+ L      R+A PGEF++
Sbjct: 61  QTGEIMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LVIREGARMAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSRKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  +  T E       IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPEAIETSELPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++++  +I ++   +    +   +  S+ RH+  + + V  L+  ++NE  + G+
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|28883199|gb|AAO50079.1| tRNA-modification protein [Pseudomonas syringae pv. phaseolicola]
          Length = 461

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/410 (34%), Positives = 217/410 (52%), Gaps = 23/410 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGRAAEAIIGRTLK-PRFAHYGPFVDDAGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDPIDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            +    G GLE L   +K+ +  + +    S  + +RHL  L      LE
Sbjct: 358 LSARSGGAGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLE 406


>gi|209524294|ref|ZP_03272844.1| tRNA modification GTPase TrmE [Arthrospira maxima CS-328]
 gi|209495385|gb|EDZ95690.1| tRNA modification GTPase TrmE [Arthrospira maxima CS-328]
          Length = 469

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 153/477 (32%), Positives = 251/477 (52%), Gaps = 48/477 (10%)

Query: 1   MNHEKETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-- 56
           ++ + ETI A++T  +P   +I I+R+SG     + + + K     P  +S R  +G   
Sbjct: 4   ISTKTETIAAIATAIVPQQGSIGIVRMSGSEAVAIAKTLFKAPGNQP-WSSHRILYGYIH 62

Query: 57  ---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
                +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF
Sbjct: 63  HPHTQQLVDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQ-LCLQAGARLATPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF-- 171
           + RAF NG++DL +AES+A+L+ +++      ++ G+ G+L++        + H+RS   
Sbjct: 122 TLRAFLNGRLDLTQAESVAELVGAKSPQAASAALAGLRGKLAA-------PIHHLRSLCL 174

Query: 172 -----IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
                IEA +DF  EED+   +  E+++ +  +   ++  +     GE++R G K+ I+G
Sbjct: 175 DILAEIEARVDF--EEDLPPLNESEIIHQLQEVLQQLTDILDTADRGELLRTGLKVAIVG 232

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N GKSSL NA ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIR++DD VE+
Sbjct: 233 RPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRKSDDKVEQ 292

Query: 287 EGIKRTFLEVENADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSD-LYSTYTEEY 339
            G++R+ +  ++ADL+L   +       ++ EI    KN   I +  KSD L S   E  
Sbjct: 293 IGVERSQIAAQSADLVLFTLDCENGWTEAENEIYQQVKNRPIIIVMNKSDRLSSAQLENL 352

Query: 340 DHLI--------------SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLS 384
              I              ++   +G+ +L   I  ++ +   +        ++R    L+
Sbjct: 353 RQSIINQLDIKPSLIIATAATLNQGITDLEESILNAVHTENLQSANLEFAINQRQAAALT 412

Query: 385 QTVRYLEMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +    LE       D    D    +LR A  +LG++TG    E +LD IFS+FCIGK
Sbjct: 413 RAKIALEQVENTISDRLPFDFWTIDLRGAIHALGEVTGEEVTESVLDRIFSRFCIGK 469


>gi|227550631|ref|ZP_03980680.1| tRNA modification GTP-binding protein TrmE [Enterococcus faecium
           TX1330]
 gi|227180232|gb|EEI61204.1| tRNA modification GTP-binding protein TrmE [Enterococcus faecium
           TX1330]
          Length = 492

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 156/469 (33%), Positives = 266/469 (56%), Gaps = 42/469 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDGR 59
           E +TI A+ST     AISI+RLSG    Q+ + +     K+    P   ++ Y   +D +
Sbjct: 34  EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYHSGNKRLSEVPSH-TIHYGHIVDPK 92

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++R
Sbjct: 93  SDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 151

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++
Sbjct: 152 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 211

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL 
Sbjct: 212 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 271

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +
Sbjct: 272 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 331

Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-YDHL------- 342
             ADLILL+    + + ++ E  +   K +  I +  K+DL +   +E  + L       
Sbjct: 332 AEADLILLVLNQSEPLTAEDEQLLEATKGLKRIILLNKTDLPAQLEQEKLNKLIENEPVF 391

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398
            IS    +GL+ L    +S +S+ F    FS  + +R   ++S T  +  LE ASL+ + 
Sbjct: 392 SISVAKNDGLDHL----ESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 443

Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                D G+  D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 444 VIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 492


>gi|332300821|ref|YP_004442742.1| tRNA modification GTPase mnmE [Porphyromonas asaccharolytica DSM
           20707]
 gi|332177884|gb|AEE13574.1| tRNA modification GTPase mnmE [Porphyromonas asaccharolytica DSM
           20707]
          Length = 470

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 156/481 (32%), Positives = 256/481 (53%), Gaps = 52/481 (10%)

Query: 1   MNHE-KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           M H+  ETI A +T AL   +++IR+SG    Q+ E +  K+   PR+A+      +DG+
Sbjct: 1   MIHDLSETICAPAT-ALGGGLAVIRISGSLAPQIAERLLGKRLT-PREAT-TAGLRIDGQ 57

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D  +   F +P S+TGE+  E   H    +V  ILE +A+    R+A+PGEF+RRA  
Sbjct: 58  LIDLVVATYFAAPHSYTGEEVVELSCHASPYIVRSILEWIAQQEGCRMADPGEFTRRALA 117

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           +GK+DL EAE++ADLI++ T  Q +++ME  +G LS L  +    L      +E +LDFS
Sbjct: 118 HGKLDLAEAEAVADLIAATTATQHKMAMEQHTGRLSHLLNELRATLLRFAGLLELELDFS 177

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            EEDV       ++  +  +++ +         G+ ++ G    I+G  N GKSSL NAL
Sbjct: 178 -EEDVAFADRSTLVETLATIQHQLRLLTQSFSTGQELQQGIPTAIIGAPNVGKSSLLNAL 236

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            + + AIV+DIPGTTRD +   L + G L ++ DTAG+R+T D+VE+ GI+R++ ++ +A
Sbjct: 237 LQHERAIVSDIPGTTRDTVEGRLTIRGTLFRLIDTAGLRQTTDLVEQLGIERSYQQISSA 296

Query: 300 DLILLL------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342
            LIL +             +++    ++ P++   + +  K DL  T  E  D L     
Sbjct: 297 RLILWVIAPPLPTWDELEAQLSEILRLTSPESTLMLLLN-KRDLL-TEREVTDWLSNCSS 354

Query: 343 ----------------ISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRHLYH 382
                           IS+   +G+E L    +   +++ S++   + +++    RH   
Sbjct: 355 LLQRTNGKPHTTSPLAISARAAQGIETLEELMVTSTQTLHSDEETVMLYNL----RHYEA 410

Query: 383 LSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIG 439
           L++  R LE+ S    + GL  D+I   LR A   +G +TG  +  +++L  IFS FCIG
Sbjct: 411 LTKASRALELVSEGLHN-GLTSDLITPYLREAIEEIGLVTGASITSDEVLGFIFSHFCIG 469

Query: 440 K 440
           K
Sbjct: 470 K 470


>gi|251782601|ref|YP_002996904.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391231|dbj|BAH81690.1| tRNA(5-carboxymethylaminomethyl-2-thiouridylate)synthase
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 458

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 262/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G  +D 
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +I + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNILAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY---DHL-ISS 345
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E    D++ IS 
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360

Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK---DC 400
            T + +  + ++I  +  +     +   +  S+ RH+  + + V+ LE  ++N+      
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGLALGM 418

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|167754411|ref|ZP_02426538.1| hypothetical protein ALIPUT_02705 [Alistipes putredinis DSM 17216]
 gi|167659036|gb|EDS03166.1| hypothetical protein ALIPUT_02705 [Alistipes putredinis DSM 17216]
          Length = 461

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 248/465 (53%), Gaps = 29/465 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDG 58
           MN   +TI A +T A   AI++IRLSGP     C+ I + +KP    A     +G  +DG
Sbjct: 1   MNTSTDTIVAPAT-ASGGAIAVIRLSGPEAIACCDRIFRGRKPLAEAAGHTLHYGEVIDG 59

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            R +D  +  ++ +P S+TGED+ E   HG   +V+ I+  L +    R+A PGEF+ RA
Sbjct: 60  DRTIDDVVAAIYRAPHSYTGEDAVELSCHGSPYIVSEIIALLLR-SGARMAQPGEFTIRA 118

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F  G++DL +AE++ADLI+S++     ++   M G  S+  G   D+L  + S +E +LD
Sbjct: 119 FLAGRMDLAQAEAVADLIASDSRASHAMASTQMRGGYSAALGALRDELLQLASLLELELD 178

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           FSEE DVQ F+ +  L +++  ++++I+      +LG  I+ G  + I+G  N GKS+L 
Sbjct: 179 FSEE-DVQ-FADRARLREMMHRIESEITRLTDSFRLGNTIKKGVAVAIVGEPNVGKSTLL 236

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  ++ A+V+DI GTTRD +   L+++G L +  DTAG+ +T D +E+ GI RT   +
Sbjct: 237 NRLLGEERALVSDIAGTTRDTIEETLNIDGVLFRFIDTAGLHDTADRLEQMGIDRTQEMI 296

Query: 297 ENADLILLLKEINS--KKEISFPKNIDFIFIGTKSDL-----------------YSTYTE 337
             A ++L + +        I        + I  K D                  Y   + 
Sbjct: 297 RRAQIVLQVVDATCPIPPAIQITSEQTRLLIVNKCDSPDARITESKVSSGCGIEYRVSSA 356

Query: 338 EYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SL 395
             D L IS+ TGEG+E L+ ++++            + S+ RHL  L Q +  L  A + 
Sbjct: 357 NPDTLFISAKTGEGIERLLARLRATFDTGSIYDGDPVISNSRHLEALRQALDALHRALTA 416

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + D   D+++E++R     LG ITG +  + +L  IFSKFCIGK
Sbjct: 417 LDDDRSADLLSEDIRQVIHHLGTITGEITNDDILSQIFSKFCIGK 461


>gi|90194092|gb|ABD92607.1| ThdF [Actinobacillus hominis]
          Length = 435

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 150/437 (34%), Positives = 237/437 (54%), Gaps = 30/437 (6%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTGE
Sbjct: 7   GVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTGE 65

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++ADLI + 
Sbjct: 66  DVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195
           +E   R +++ + GE S+   Q +D + ++R+++EA +DF +EE +   +  ++   LND
Sbjct: 126 SEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLND 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+   N +     QG +     +G      G  NAGKSSL NALA ++ AIVT+I GTTR
Sbjct: 185 IIRQLNGVRQEAKQGAICVRDESGDA----GRPNAGKSSLLNALAGREAAIVTNIAGTTR 240

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           DVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL+ +   +   +
Sbjct: 241 DVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEA 300

Query: 316 F-----------PKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTGEGLEELINKI 358
           F           P+NI    I  K DL   S   +E D      +S+ T  G++ L   +
Sbjct: 301 FKTEWADFLAKLPQNIPVTVIRNKVDLSGESESLQELDGFTLIRLSAQTKVGVDLLREHL 360

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416
           K  +  +         + +RHL  L     +LE     L +   G +++AE LR+   +L
Sbjct: 361 KKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNAL 418

Query: 417 GKITGCVDVEQLLDIIF 433
            +ITG    + LL  IF
Sbjct: 419 SEITGQFTSDDLLGNIF 435


>gi|166367612|ref|YP_001659885.1| tRNA modification GTPase TrmE [Microcystis aeruginosa NIES-843]
 gi|205415798|sp|B0JVV0|MNME_MICAN RecName: Full=tRNA modification GTPase mnmE
 gi|166089985|dbj|BAG04693.1| thiophen and furan oxidation protein [Microcystis aeruginosa
           NIES-843]
          Length = 457

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 245/463 (52%), Gaps = 29/463 (6%)

Query: 1   MNHEKETIFAVSTGALP--SAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL 56
           M +  +TI A++T  +P   +I I+RLSG     +    F    ++ +    S R  +G 
Sbjct: 1   MLNTGDTIAAIATAIVPEQGSIGIVRLSGSEAVAIARRLFHSPNRQKW---QSHRLLYGY 57

Query: 57  -----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
                   I+D+ LL++  +P SFT ED  EFH HGGI  V  +L+ L      RLA  G
Sbjct: 58  IRHPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQ-LCLENGARLAQAG 116

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EFS RAF NG+IDL +AES+ DL+ + +    + ++ G+ G+L+            I + 
Sbjct: 117 EFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCLDILAE 176

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           IEA +DF  EED+       VL+ I  +   ++  ++  + GE++R+G K+ I+G  N G
Sbjct: 177 IEARIDF--EEDLPPLDHAAVLHSIEQVFCQVNLILATAERGELLRSGLKVAIVGRPNVG 234

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NA ++ D AIVTD+PGTTRD++   L + G  V++ DTAGIR   D VE+ G++R
Sbjct: 235 KSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIGVER 294

Query: 292 TFLEVENADLILLLKEINS---KKEISFPKNID---FIFIGTKSDLYSTYTEEYDHLI-- 343
           +     +ADL+LL     S   +++    +++     I +  K DL +  T  Y   I  
Sbjct: 295 SRQTARSADLVLLTVSAESGWTQEDEEIYRSVSDRRLILVINKIDLANPETVIYPAEIKR 354

Query: 344 ----SSFTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
               S+   +G+E+L    I ++ + + +     +  ++R    L++    L+      +
Sbjct: 355 VVKLSAAQNQGIEDLEKSLINAVQNQELQAANLDLAINQRQAAALTRAKIALQQVKKTID 414

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++   D  + +LR A  SLG+ITG    E +LD IFS+FCIGK
Sbjct: 415 QNLPFDFWSIDLRTAIQSLGEITGEEVTESVLDRIFSRFCIGK 457


>gi|302660640|ref|XP_003021997.1| hypothetical protein TRV_03891 [Trichophyton verrucosum HKI 0517]
 gi|291185921|gb|EFE41379.1| hypothetical protein TRV_03891 [Trichophyton verrucosum HKI 0517]
          Length = 594

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/326 (38%), Positives = 187/326 (57%), Gaps = 35/326 (10%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR 59
            + +  TI+A+ST    +AI+IIR+SGP C  +   +C  +K P PR A+LR  +     
Sbjct: 40  QDEKPTTIYALSTAPGRAAIAIIRISGPDCIPIYNALCPNRKLPKPRFAALRTIYEPGKP 99

Query: 60  I-----LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--------L 105
           +     LD G L+  FP+P + TGED  E HVHGG AV+  IL  + K  +        +
Sbjct: 100 VSADNALDSGALVFHFPAPNTVTGEDVLELHVHGGPAVIKSILSAIPKCASPGDAPSASI 159

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           R A PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G +  LS+ Y QW  +L
Sbjct: 160 RYAEPGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQWRKQL 219

Query: 166 THIRSFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
            + R  +EA +DFSE+    E V +F S  V   +  L + I+ HI     GE++R+G K
Sbjct: 220 LYARGELEALIDFSEDQHFDESVDDFISS-VTGQVDSLLHQINLHIKNASKGELLRSGIK 278

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + +LG  NAGKSSL N +  +D AIV+   GTTRD++ + +DL G+L K  D AG+R   
Sbjct: 279 VALLGAPNAGKSSLLNQIVGRDAAIVSSEEGTTRDIVDVGIDLGGWLCKFGDMAGLRSKL 338

Query: 279 ------------ETDDIVEKEGIKRT 292
                        T   +E+EGI+R 
Sbjct: 339 SQSQIPAQGHVFSTVGKIEEEGIRRA 364


>gi|282902629|ref|ZP_06310522.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           C160]
 gi|282597088|gb|EFC02047.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           C160]
          Length = 459

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 153/465 (32%), Positives = 254/465 (54%), Gaps = 39/465 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLDGRILD 62
           +TI ++ST     AI I+RLSGP   ++ + + K K      P   ++ Y     G I+D
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVP-PHTINY-----GHIID 57

Query: 63  --------KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                   + ++ V  +P++FT ED  E + HGGI  +N +LE L      R+A PGEF+
Sbjct: 58  PESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E 
Sbjct: 117 KRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEV 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS
Sbjct: 177 NIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSS 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           + N L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVEK G++R+  
Sbjct: 237 MLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRK 296

Query: 295 EVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-- 343
            +  ADLIL +  +N+ + ++          KN D I I  K DL       E   +I  
Sbjct: 297 ALSQADLILFV--LNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGD 354

Query: 344 ------SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SL 395
                 S    EG++EL  +I+ +    + +    +  S+ RH+  L Q  + ++ A   
Sbjct: 355 TPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDA 414

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            E    +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 415 AESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459


>gi|24212880|ref|NP_710361.1| tRNA modification GTPase [Leptospira interrogans serovar Lai str.
           56601]
 gi|26454677|sp|P97043|MNME_LEPIN RecName: Full=tRNA modification GTPase mnmE
 gi|24193543|gb|AAN47379.1| tRNA modification GTPase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 456

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 157/459 (34%), Positives = 241/459 (52%), Gaps = 29/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-------PRKASLRYFFGLDG 58
           +TI AVST +   AI IIR+SGP    +       K  F       PR A ++  F +  
Sbjct: 3   DTIAAVSTSSGAGAIGIIRMSGPEALTISSSFLFSKNKFLSPSEILPRTA-IQCVFQIGD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R +D+ L   F SP S+TGED  EFH HG   ++   L+ + +    R A  GEFSRRAF
Sbjct: 62  RKIDQILFFYFKSPNSYTGEDLCEFHFHGNPILLREALDAIFR-AGARPAKQGEFSRRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            N K+DL E E++  LIS+ +  +  L+ + + GE++        +L  +++  EA++DF
Sbjct: 121 LNEKLDLTEVEAIGRLISARSRFELELAQKNVFGEVTRFTSNLRSQLISLKAECEAEIDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S E D+   S +E    I  +K+   + IS+    E +   ++IV+ G  N GKSSL N 
Sbjct: 181 STE-DLTYESLEERKTRIENVKSLCQTLISKSSSAEKLIQQFRIVLYGEPNTGKSSLMNV 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  K+ +I+++IPGTTRD ++ ++ LEG  V++ DTAG+RET D +EK GI+R+  E ++
Sbjct: 240 LLGKERSIISEIPGTTRDYISEEILLEGIPVRLVDTAGVRETTDHIEKLGIERSEKEFQS 299

Query: 299 ADLILLLKEINSKKE----------------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
           AD+ L L ++ SKKE                I     ID +      +L+S   +     
Sbjct: 300 ADIRLFLVDV-SKKENWKEFINKSRERLEGSILIANKIDILNSSWDRNLFSDVKDLIVLE 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           IS  T EG+  L++ IK   + K       +   +R  YH    VR L+    L ++   
Sbjct: 359 ISCKTKEGISNLLDAIKE-RTGKLGHSEDYVLLEERQRYHFETIVRCLDKTLHLLKEGAP 417

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +I  + +  A   +G++ G VD E++L  IFSKFC+GK
Sbjct: 418 AEIYIQEINYALAEIGEVNGKVDTEEVLGRIFSKFCVGK 456


>gi|255659827|ref|ZP_05405236.1| tRNA modification GTPase TrmE [Mitsuokella multacida DSM 20544]
 gi|260847902|gb|EEX67909.1| tRNA modification GTPase TrmE [Mitsuokella multacida DSM 20544]
          Length = 461

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 157/466 (33%), Positives = 246/466 (52%), Gaps = 34/466 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LD- 57
            + +TI A++T      I +IR+SG    +     F  K  KP     S    +G  +D 
Sbjct: 2   QQGDTISAIATPQGEGGIGVIRISGEHALKTAGKVFEAKNGKPLVLAGSHHAVYGHIVDE 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G+++D+ L +V  +P S+T ED  E   HGG+  +   LE L      R A  GEF++R
Sbjct: 62  KGQVVDEALALVMLAPHSYTVEDVVELQCHGGLMTLRKTLE-LTWKAGARPAERGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH----IRSFI 172
           AF NG++DL EA+++ D+I + TE     S+   +G L+  + + I  + H    + + I
Sbjct: 121 AFLNGRLDLSEAQAVMDIIQARTET----SLTMAAGHLTGHFSKGIHAMRHEILGMIAHI 176

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +DF E+E V +  + ++  +++ ++N I+  +     G I+R+G    I+G  N GK
Sbjct: 177 EAAIDFPEDE-VDDVLTYDIQKNVVEIRNKIAGLLQTAHAGRILRDGLLTAIIGKPNVGK 235

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N+L +++ AIVTD+PGTTRD +    D+ G  ++I DTAGIR TDD+VE+ G+++ 
Sbjct: 236 SSLLNSLLREERAIVTDVPGTTRDSIEEYADVGGIPLRIIDTAGIRATDDVVERIGVEKA 295

Query: 293 FLEVENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEEY--DHL-- 342
              V+ A LIL L    + ++S+ E  +   +  D I +  K DL    T E    H+  
Sbjct: 296 RSYVKEAALILALFDASRPLDSEDEEILKLVRGRDAILLLNKDDLQPVVTAEMLQRHVKK 355

Query: 343 ------ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                 IS+ T +GLE L   I + + +        +  +  R    L Q   +L  A  
Sbjct: 356 EVPVITISTRTQDGLENLAKAITAKVYAGTQAGQEGTFVTDARQAEVLRQADEHLAAAIR 415

Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E D GLD I+ +LR A   LG++TG    E +++ IFSKFCIGK
Sbjct: 416 TIEADMGLDFISIDLRSAWEKLGELTGETVGEDIINEIFSKFCIGK 461


>gi|21910288|ref|NP_664556.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS315]
 gi|28895865|ref|NP_802215.1| tRNA modification GTPase TrmE [Streptococcus pyogenes SSI-1]
 gi|25453303|sp|Q8K7L5|MNME_STRP3 RecName: Full=tRNA modification GTPase mnmE
 gi|21904483|gb|AAM79359.1| putative thiophene degradation protein F [Streptococcus pyogenes
           MGAS315]
 gi|28811115|dbj|BAC64048.1| putative thiophene degradation protein F [Streptococcus pyogenes
           SSI-1]
          Length = 458

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 262/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G  +D 
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY---DHL-ISS 345
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E    D++ IS 
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360

Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK---DC 400
            T + +  + ++I  +  +     +   +  S+ RH+  + +TV+ LE  ++N+      
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKTVQSLE--AVNDGLALGM 418

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|89256498|ref|YP_513860.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           holarctica LVS]
 gi|156502609|ref|YP_001428674.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|122500633|sp|Q2A342|MNME_FRATH RecName: Full=tRNA modification GTPase mnmE
 gi|166991110|sp|A7NCL5|MNME_FRATF RecName: Full=tRNA modification GTPase mnmE
 gi|89144329|emb|CAJ79616.1| tRNA modification GTPase trmE family protein [Francisella
           tularensis subsp. holarctica LVS]
 gi|156253212|gb|ABU61718.1| tRNA modification GTPase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 450

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 157/465 (33%), Positives = 254/465 (54%), Gaps = 43/465 (9%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + K+TI A++T      I IIR+SG    ++ E + KK+   PR A+    +  D  I+D
Sbjct: 2   YTKDTIVAIATPQGNGGIGIIRISGIDALEIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GEF+ RAF N K
Sbjct: 60  HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++EA +DF EEE
Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178

Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
                D +  SS +E+   IL +KN         K G I+  G  ++++G  NAGKSSL 
Sbjct: 179 INFLEDQKIHSSLEEIYKVILAIKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR   ++
Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291

Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341
           + AD +L + +  +  ++ F              PK+ID  ++  K DL       + +H
Sbjct: 292 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 351

Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395
           + IS+    G+    E ++NK+     N+      SI  + +RH+  ++    ++++A  
Sbjct: 352 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLAKE 405

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 406 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|327438167|dbj|BAK14532.1| predicted GTPase [Solibacillus silvestris StLB046]
          Length = 461

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 152/461 (32%), Positives = 254/461 (55%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG--LDGR 59
           E +TI A+ST     AI+I+RLSG     + + I K    K     A+    +G  +D +
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDEAVAIADKIFKSPNHKRLTEVATHTIHYGHLIDPK 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ++++ +L +   P++FT ED  E + HGGI  VN +L+ L      RLA PGEF++R
Sbjct: 62  TDEVVEEVMLSLMRGPKTFTREDVVEINCHGGIVSVNRVLQ-LVLRYGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G+LS L       L    + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLITSLRQALLETLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +   +L    +++ +I   +     G+I+R G   VILG  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTIPVLLEKCGWVREEIIKLLQTSSQGKILREGLSTVILGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSREAL 300

Query: 297 ENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDHLI------- 343
           ++ADLILL+    +E+  + E  F   + +D+I +  K+D+         H +       
Sbjct: 301 KDADLILLVLNYGEELTEEDERLFETIQAMDYIVVVNKTDIERKIDLNRVHELAGKHRVV 360

Query: 344 --SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S    EG+ EL   I ++    + +    +  S+ RH+  L Q  + +E A +  E  
Sbjct: 361 TTSLLKEEGVIELEEAIAALFFEGQVEANDLTYVSNARHIALLHQAQQVIEDALAAAESG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D+I  ++      LG+I G    E L++ +FS+FC+GK
Sbjct: 421 VPVDMIQIDVTRTWEILGEIIGDTVQESLINQLFSQFCLGK 461


>gi|319936667|ref|ZP_08011080.1| tRNA modification GTPase mnmE [Coprobacillus sp. 29_1]
 gi|319808224|gb|EFW04789.1| tRNA modification GTPase mnmE [Coprobacillus sp. 29_1]
          Length = 444

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 149/444 (33%), Positives = 242/444 (54%), Gaps = 12/444 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY-FFGLDGRILDKG 64
           + I A++T  L +AISIIRLSG  C    +     +       ++ Y +   D + +D+ 
Sbjct: 4   DIIVAIATSRLEAAISIIRLSGKDCIAFVQSFFTGQIKNKESHTITYGYIKDDQKRIDEV 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+ ++    +FTGE+  E + HGG+ +   +L  L      R+A  GEFS+RAF NG+ID
Sbjct: 64  LVNIYRGHRTFTGEEMVEINCHGGVFITQKVLN-LCLKKGARMAEHGEFSKRAFLNGRID 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE+++DLI+++ +    L+++G+ G +S       + L  I + IE ++D+ E EDV
Sbjct: 123 LSQAEAISDLITAKNDYATELALKGIQGNISHFIEDLREDLIKIITQIEVNIDYPEYEDV 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++  +L     LK  ++  I   +   ++++G   VI+G  N GKSSL NAL  +D 
Sbjct: 183 EELTADSLLPKSQLLKEKMNHIIESSQNVHLLKDGISTVIIGKPNVGKSSLLNALLNEDK 242

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRD++   + L+  ++ + DTAGIRET+DIVE  G+ ++   +  ADL+LL
Sbjct: 243 AIVTDIAGTTRDIVEGTIRLDNIILNMIDTAGIRETNDIVENIGVNKSKELIHKADLVLL 302

Query: 305 LKEINSK--KE----ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           + + +S+  KE    I   ++ + I +  K D    Y  E D +  S     +E LIN+I
Sbjct: 303 VLDSSSELTKEDYELIELSQDTNRIIVMNKKDQGIKY--ELDGIFISAKDNEIESLINEI 360

Query: 359 KSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSL 416
           K +    K       I ++ R +  L +  + LE A    E +   D+I  +L  +  +L
Sbjct: 361 KKMFELGKITAGQEDILANARQIQLLEKARQSLENAIEAMENNVPTDLIVTDLYESWENL 420

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            +I G    E LLD +F +FCIGK
Sbjct: 421 KEILGERAKEDLLDELFKRFCIGK 444


>gi|319957038|ref|YP_004168301.1| tRNA modification GTPase trme [Nitratifractor salsuginis DSM 16511]
 gi|319419442|gb|ADV46552.1| tRNA modification GTPase trmE [Nitratifractor salsuginis DSM 16511]
          Length = 446

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/447 (31%), Positives = 240/447 (53%), Gaps = 15/447 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T    ++ISIIRLSGP    +   I  K    PR A L   F  +G ++D+G+
Sbjct: 3   DTIAAIATAHGVASISIIRLSGPQSLDIARKIAPKATFTPRYAQLCDLFDAEGVLIDRGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +P S+TGE+  EF VHGG+ V   ILE  A+    RLA PGEFS+RAF NGKIDL
Sbjct: 63  VLRFQAPHSYTGEEIVEFQVHGGLVVAEQILES-ARRHGARLAEPGEFSKRAFLNGKIDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE++A +I +++    R+    + GEL     +  +KL    +  E  +D++EE D+ 
Sbjct: 122 SEAEAIAKMIEAKSADAARILARQIKGELGRFVEESREKLLRALAHSEVMIDYAEE-DIP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
               + +   ++ LK+ +   +   +    +  G+++ I+G  N GKSSL NA+   + A
Sbjct: 181 EDLIRGLEAQLVELKDSLERIVQSSRRRRGLIEGFRVAIVGKPNVGKSSLLNAMLSYERA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+D+ GTTRD +   + +  ++V+I DTAGIR+T+D VE+ G++R+   +E A++++ L
Sbjct: 241 IVSDVAGTTRDTIEEQIRIGSHIVRIIDTAGIRQTEDRVERIGVERSLASLEEAEVVIAL 300

Query: 306 KEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTE---EYDHLISSFTGEGLEE 353
            + +   E         I   ++ + I    K+DL     E   E  H +          
Sbjct: 301 FDASRPWEREDERILERIEALRDKELIVALNKTDLPRRLEEPRLEKFHPLEISARRDFSH 360

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L+ +++  L    +     + S +R +  + +  R +  A    K   L+  + +++ A 
Sbjct: 361 LMEELQRRLDALGQDEELMLAS-ERQIEAVEECARQIREAVAPLKQGELEFFSYHIQEAV 419

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++ +IT   + EQ+LD +F +FC+GK
Sbjct: 420 QAISRITRPYESEQILDRMFGEFCLGK 446


>gi|167755185|ref|ZP_02427312.1| hypothetical protein CLORAM_00690 [Clostridium ramosum DSM 1402]
 gi|237734935|ref|ZP_04565416.1| tRNA modification GTPase mnmE [Mollicutes bacterium D7]
 gi|167705235|gb|EDS19814.1| hypothetical protein CLORAM_00690 [Clostridium ramosum DSM 1402]
 gi|229381711|gb|EEO31802.1| tRNA modification GTPase mnmE [Coprobacillus sp. D7]
          Length = 444

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 151/457 (33%), Positives = 251/457 (54%), Gaps = 36/457 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKASLRYFFGLD-GRILD 62
           ++ I A++T  L +AIS+IR+SGP C   V +F   K    P   ++ Y + +D G+ +D
Sbjct: 3   EDIIVAIATSRLEAAISMIRVSGPDCIAFVQKFFTGKIIEKPSH-TINYGYIIDDGKRID 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+ ++    +FTGE+  E + HGG+ + + +LE   K    R+A  GEFS+RAF NG+
Sbjct: 62  EVLVNIYRGTRTFTGEEMVEINCHGGVYITSRVLEVCIK-NGARMAERGEFSKRAFLNGR 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AE+++D+I+++      L+++G+SG +S       + L  I + IE ++D+ E +
Sbjct: 121 IDLSQAEAISDIITAKNSYATDLALKGISGSISGFIEDLKEDLIQIITQIEVNIDYPEYD 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV+  ++  +L     L   ++  +   K  ++++ G K VI+G  N GKSSL NAL ++
Sbjct: 181 DVEELTASSLLPRSANLLTKMNKILDDSKNIKLVKEGIKTVIIGRPNVGKSSLLNALLRE 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVT+I GTTRD++   + ++G ++ + DTAGIRETDDI+E  G++++   +  ADL+
Sbjct: 241 DKAIVTNIAGTTRDIVEGSISIDGVVLNMIDTAGIRETDDIIESMGVEKSKELIHQADLV 300

Query: 303 LLLKEINSKKEIS--------FPKNIDFIFI------GTKSDLYSTYTEEYDHLISSFTG 348
           LL+  I+  + +S          ++   I +      GTK DL        D+ IS+ T 
Sbjct: 301 LLV--IDGSQSLSSEDMQLLELTEDATRIIVLNKADQGTKVDLDGIVISAKDNQISTLTE 358

Query: 349 E-----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
           E      L ++I+    IL+N  + +       +R    L Q V  +EM          D
Sbjct: 359 EIKKMFELGKIIDNNDHILTNARQTMLL-----QRASQALKQAVEAMEMM------IPTD 407

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I  +L     +L +I G    E LLD +F +FCIGK
Sbjct: 408 LIVTDLYECWNNLKEILGEKAKEDLLDELFKRFCIGK 444


>gi|299143471|ref|ZP_07036551.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298517956|gb|EFI41695.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 458

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 157/466 (33%), Positives = 254/466 (54%), Gaps = 42/466 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGRI 60
           +TI A+ST    + I I+R+SG +  ++    F+    K      +    +G    + ++
Sbjct: 4   DTISAISTATGEAGIGIVRMSGENSIEIANSIFVPMGSKTLIESDNRTMVYGHIYDNDKL 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L++    P ++T E+  E + HGGI  V  IL+ L      RLA PGEF++RAF N
Sbjct: 64  IDEVLIVKMLMPHTYTRENVVEIYCHGGIISVRRILD-LTLDRGARLAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ D+I S++++   +S+  + G LS       +++  + + I A++DF E
Sbjct: 123 GRLDLAQAEAVIDIIKSKSDISYNMSLRQLEGSLSGRIADIRERVMKMTALIVANIDFPE 182

Query: 181 EEDVQ-NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +E V+  +SS  +  D + +   ++  I     G+++R+G   VILG  N GKSSL N L
Sbjct: 183 DEIVEATYSS--LREDAVHVVESLNELIKNSNRGKLLRDGINTVILGKPNVGKSSLLNGL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            + + AIVTDIPGTTRDV+T  ++L+G L+KI+DTAGIR+TDD VE+ G+      ++ +
Sbjct: 241 LRDERAIVTDIPGTTRDVITDFVNLDGILLKITDTAGIRDTDDTVERIGVDLAKKSIDGS 300

Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
           DLI+               +++ I +KK I      D     +K D+     ++ D+L  
Sbjct: 301 DLIIAIFDTSRPFDNDDYEIIRLIGNKKSIILLNKSDLDKKVSKDDI-EDLVKDRDYLDI 359

Query: 345 SFTGEG----LEELINKIKSILSNKFKK----LPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           S  GEG    +EE   KIK +  +   K    L  +   H R L    ++++Y+    LN
Sbjct: 360 SVVGEGEILRIEE---KIKEMFFDGEVKENSTLYVNNLRHIRALKAAKESMKYV----LN 412

Query: 397 --EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E +  LD++  NL     SLG+ITG    E +LD +FS+FCIGK
Sbjct: 413 DIENEMFLDLLEVNLEDVLSSLGEITGETSTEDVLDKVFSEFCIGK 458


>gi|291571683|dbj|BAI93955.1| tRNA modification GTPase [Arthrospira platensis NIES-39]
          Length = 469

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 155/477 (32%), Positives = 250/477 (52%), Gaps = 48/477 (10%)

Query: 1   MNHEKETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-- 56
           ++ + ETI A++T  +P   +I I+R+SG     + + + K     P  +S R  +G   
Sbjct: 4   ISTKSETIAAIATAIVPQQGSIGIVRMSGAEAVAIAKTLFKAPGNQP-WSSHRILYGYIH 62

Query: 57  ---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
                +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF
Sbjct: 63  HPHTQQLVDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQ-LCLQAGARLATPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF-- 171
           + RAF NG++DL +AES+A+L+ +++      ++ G+ G+L+       D + H+RS   
Sbjct: 122 TLRAFLNGRLDLTQAESVAELVGAQSPQAASAALAGLRGKLA-------DPIHHLRSLCL 174

Query: 172 -----IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
                IEA +DF  EED+   +  E+++ +  +   ++  +     GE++R G K+ I+G
Sbjct: 175 DILAEIEARVDF--EEDLPPLNESEIIHQLQEVLQQLTDILDTADRGELLRTGLKVAIVG 232

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N GKSSL NA ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIR++DD VE+
Sbjct: 233 RPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRKSDDKVEQ 292

Query: 287 EGIKRTFLEVENADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSD-LYSTYTEEY 339
            G++R+ +  ++ADL+L   +        + EI    KN   I +  KSD L S   E  
Sbjct: 293 IGVERSQIAAQSADLVLFTLDCEKGWTEGENEIYQQVKNRPIIVVMNKSDRLSSAQLENL 352

Query: 340 DHLI--------------SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLS 384
              I              ++   +G+ +L   I  ++ +   +        ++R    L+
Sbjct: 353 RQAIINQLDIKPSLIIATAATLNQGITDLETSILNAVHTENLQSANLEFAINQRQAAALT 412

Query: 385 QTVRYLEMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +    LE       D    D    +LR A  +LG++TG    E +LD IFS+FCIGK
Sbjct: 413 RAKIALEQVENTIGDRLPFDFWTIDLRGAIHALGEVTGEEVTESVLDRIFSRFCIGK 469


>gi|148266438|ref|YP_001233144.1| tRNA modification GTPase TrmE [Geobacter uraniireducens Rf4]
 gi|205829152|sp|A5G9V3|MNME_GEOUR RecName: Full=tRNA modification GTPase mnmE
 gi|146399938|gb|ABQ28571.1| tRNA modification GTPase trmE [Geobacter uraniireducens Rf4]
          Length = 455

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 153/459 (33%), Positives = 248/459 (54%), Gaps = 30/459 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGR 59
           ++TI A+ST      + IIR+SG     + + I K+ +    + S R+++G     +   
Sbjct: 4   QDTIAAISTPTGEGGVGIIRVSGRHVLSIADAIFKRNRDGGLQ-SHRFYYGAIIDPVSAD 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+ +++    P S+T ED  E   HGG  VV  IL+ L      RLA PGEF++RAF 
Sbjct: 63  CLDEVMVVFMKGPHSYTREDVLEIQCHGGYLVVQRILD-LVLQQGTRLAGPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL++AE++ D+I S+TE    L+     G LS    +  D +    + IEA +DF 
Sbjct: 122 NGRIDLVQAEAIIDVIRSKTEKSLALAQHQREGLLSQRIARVKDGIVSSLALIEAFIDFP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE D+     ++V   +     ++ + ++    G+++R+G  +VI G  N GKSSL N L
Sbjct: 182 EE-DIDVLGIQQVGAHVDCSLTELETLLAGFNEGKVLRDGVSVVIAGKPNVGKSSLLNTL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVT +PGTTRD++   + ++G  VK+ DTAGIRE+DD VE+EGIK +  ++ +A
Sbjct: 241 LREKRAIVTSVPGTTRDLIEEVVTIKGLPVKLLDTAGIRESDDRVEREGIKLSLDKIPSA 300

Query: 300 DLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------IS 344
           DL+L +         E  +  ++  P N  FI +  KSD+  ++  +   L       +S
Sbjct: 301 DLVLFIIDSSLPFSSEDQAILDVLAPCN--FIVVMNKSDICRSF--DMPQLPDVPIIAVS 356

Query: 345 SFTGEGLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
           + TG+G++ L + I    I ++      +   S  RH   L ++   L     N      
Sbjct: 357 TLTGDGIDALQDAIFEAFIHNHAVDSREYVAVSQARHRDALQKSRDALLRFRGNLVAGME 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD++A +LR A  ++G++TG    + +LD+IF +FCIGK
Sbjct: 417 LDLLAIDLRDALSAIGEVTGETTADDVLDLIFQRFCIGK 455


>gi|228942633|ref|ZP_04105165.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975563|ref|ZP_04136115.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982199|ref|ZP_04142488.1| tRNA modification GTPase mnmE [Bacillus thuringiensis Bt407]
 gi|228777551|gb|EEM25829.1| tRNA modification GTPase mnmE [Bacillus thuringiensis Bt407]
 gi|228784173|gb|EEM32200.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817059|gb|EEM63152.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943282|gb|AEA19178.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 458

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 148/459 (32%), Positives = 255/459 (55%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LD-G 58
           E +TI A+ST     AI+I+R+SG    +  + I K K      +S    +G    LD  
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGK-DLTEVSSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+   ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYS-------TYTEEYDHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL         T   E + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFHAVQGKDFIVIVNKTDLPQAIDMERVTELAEGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSTDMTYVSNARHIGLLTQAGQTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|332360300|gb|EGJ38113.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK355]
          Length = 457

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 147/461 (31%), Positives = 263/461 (57%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSEVESHTLNYGHIVDPQ 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342
           + ADL+LL+  +N+ ++++          ++ + I +  K+DL      E D L      
Sbjct: 301 QEADLVLLV--LNASEQLTDQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDVIK 356

Query: 343 ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
           IS    + ++++  +I  ++  +    +   +  S+ RH+  + + +  L+  +   E  
Sbjct: 357 ISVLHNQNIDKIEERINHLIFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 417 MPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|224012297|ref|XP_002294801.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|224013676|ref|XP_002296502.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968854|gb|EED87198.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969240|gb|EED87581.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 472

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 149/437 (34%), Positives = 230/437 (52%), Gaps = 58/437 (13%)

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA-----KMP-NLRLANPGEFS 114
           LD  L++ F  P SFTGED  E H HG  AVV+G+L  L+      +P  LR A+PGEF+
Sbjct: 37  LDSALVLTFEGPNSFTGEDIVELHCHGSRAVVHGVLSALSSLSSRAIPLQLRPADPGEFT 96

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RA+ +GK+ L+E E+LADLI ++T +QR+ +++   G LS LYG W ++L    +  EA
Sbjct: 97  QRAYAHGKLGLVEVEALADLIVADTSLQRKQALQQFDGRLSRLYGGWREELIKGLAHAEA 156

Query: 175 DLDFSEEEDVQ---NFSSKEVLND------------ILFLKNDISSHISQGKLGEIIRNG 219
            +DF ++E +     F      ND            I  L+  ++ H++    GE++R+G
Sbjct: 157 VIDFGDDEALDAHDEFDDGLNANDGGMSIWGTIAPRIRSLRQAMNRHLADASRGELLRDG 216

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I I+G  NAGKSSL N LA +D AIV+  PGTTRDV+ + LDL G    + DTAG+RE
Sbjct: 217 LRIAIVGRPNAGKSSLLNLLAGRDAAIVSSSPGTTRDVVEVMLDLGGVRCTLLDTAGVRE 276

Query: 280 TD----DIVEKEGIKRTFLE----------VENADLILLLKEINSKKEISFPKNIDFIFI 325
                 + +E EG+KR              V+  DL   L+ ++    +    +     +
Sbjct: 277 EKEEGVNEIEVEGMKRARRAARDAHIIVGVVDATDLSRGLEAVDELIRVESESDESSSLL 336

Query: 326 GTKSDLY-------------STYTEEYDHL----ISSFTGEGLEELINKIKS-----ILS 363
              + LY             S  ++E  +     IS  T EG+++ ++ +       +  
Sbjct: 337 NRDNVLYVLNKLDLVEGNENSINSKEQSNSPKFGISCTTSEGVDDFLSSLTQQALSLVSG 396

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
           ++ +    +   H+RH+   S  +   E  S  +    LD+ AE LRLAS  LG++TG +
Sbjct: 397 DRDEGAVITRARHRRHVEAASDALERFEELS-GQGYMALDMAAEELRLASSELGRVTGAI 455

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE +LD++F+ FCIGK
Sbjct: 456 DVEDVLDVLFADFCIGK 472


>gi|156843181|ref|XP_001644659.1| hypothetical protein Kpol_1056p1 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115307|gb|EDO16801.1| hypothetical protein Kpol_1056p1 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 505

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 159/482 (32%), Positives = 265/482 (54%), Gaps = 50/482 (10%)

Query: 7   TIFAVSTG-ALPSAISIIRLSG-PSCFQVCEFICKKKKPFPRKASLRYFFGLDG-----R 59
           TI+A++T     SAI+++R+SG  S +   +    K +P PR A LR  + ++       
Sbjct: 26  TIYALATPPGRKSAIAVVRISGEQSKYIYRKLTDAKTEPKPRSALLRNLYNIEKYKDKKT 85

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEF 113
           +LD  L+  F SP+SFTGEDS E H+HGG A+ N +++ +  + N      +R A PGEF
Sbjct: 86  LLDNALIFFFQSPKSFTGEDSLELHLHGGKAICNAVIKTIETLHNRDEGIEIRQAQPGEF 145

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           S+RAF+NGK DL E E + ++I SETE QR  ++    G+   ++  W +K+    + + 
Sbjct: 146 SQRAFQNGKYDLTEIEGIKEIIDSETESQRLSALSSFMGQNKKMFNSWREKIVENIAQLT 205

Query: 174 ADLDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           A +DF E+ D+++       +  +I+ L+ D+ + + + +   I+++G ++ ++G  N G
Sbjct: 206 AIIDFGEDIDIEDTEKLFNRIEANIIGLERDVHTFLKRVEKANILQDGIRMTLIGVPNTG 265

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIK 290
           KSSL N +   +++IV+DIPGTTRD +   +++ GY V ISDTAGIR +T++ +E  GI+
Sbjct: 266 KSSLINKITSDEISIVSDIPGTTRDSIDAIININGYKVIISDTAGIRKDTNEKIEVLGIE 325

Query: 291 RTFLEVENADLILLLKEINSKKEISFPKNIDFI-----------FIGTKSDLYST----- 334
           R+      +D+ L+L + N+K  +S  + ID +            I  K+DL        
Sbjct: 326 RSKKMASRSDICLVLIDPNNKPLLS-NEIIDLLQAPEIKRKHLRIIVNKTDLIKNENILE 384

Query: 335 -----YTEEYD-----HLISSFTGEGLEELINKIKSI---LSNKFKKLPFSIPSHKRHLY 381
                   +Y+     + IS  T  G+E+LI ++      LSNK +     I S +R + 
Sbjct: 385 NLQEEIVTKYNLKIPINFISCATESGIEKLIYELTDTFDDLSNKSEDGNPIIVS-ERVVE 443

Query: 382 HLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CVDVEQLLDIIFSKFCI 438
            L   V Y      N K+   D++   E+L+ A+  +GKITG  V V+++L  +F+ FC+
Sbjct: 444 ILKNDVVYGINEFKNFKNYNNDVVMATESLKYAADGIGKITGDTVGVDEVLGSVFANFCV 503

Query: 439 GK 440
           GK
Sbjct: 504 GK 505


>gi|45656065|ref|YP_000151.1| tRNA modification GTPase TrmE [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|73919887|sp|Q72VY6|MNME_LEPIC RecName: Full=tRNA modification GTPase mnmE
 gi|45599298|gb|AAS68788.1| tRNA modification GTPase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 456

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 157/459 (34%), Positives = 241/459 (52%), Gaps = 29/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-------PRKASLRYFFGLDG 58
           +TI AVST +   AI IIR+SGP    +       K  F       PR A ++  F +  
Sbjct: 3   DTIAAVSTSSGAGAIGIIRMSGPEALTISSSFLFSKNKFLSPSEILPRTA-IQCVFQIGD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R +D+ L   F SP S+TGED  EFH HG   ++   L+ + +    R A  GEFSRRAF
Sbjct: 62  RKIDQILFFYFKSPNSYTGEDLCEFHFHGNPILLREALDAIFR-AGARPAKQGEFSRRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            N K+DL E E++  LIS+ +  +  L+ + + GE++        +L  +++  EA++DF
Sbjct: 121 LNEKLDLTEVEAIGRLISARSRFELELAQKNVFGEVTRFTSNLRSQLISLKAECEAEIDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S E D+   S +E    I  +K+   + IS+    E +   ++IV+ G  N GKSSL N 
Sbjct: 181 STE-DLTYESLEERKTRIENVKSLCQTLISKSSSAEKLIQQFRIVLYGEPNTGKSSLMNV 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  K+ +I+++IPGTTRD ++ ++ LEG  V++ DTAG+RET D +EK GI+R+  E ++
Sbjct: 240 LLGKERSIISEIPGTTRDYISEEIFLEGIPVRLVDTAGVRETTDHIEKLGIERSEKEFQS 299

Query: 299 ADLILLLKEINSKKE----------------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
           AD+ L L ++ SKKE                I     ID +      +L+S   +     
Sbjct: 300 ADVRLFLVDV-SKKENWKEFINKSRERLEGSILIANKIDILNSSWDRNLFSDVKDLIVLE 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           IS  T EG+  L++ IK   + K       +   +R  YH    VR L+    L ++   
Sbjct: 359 ISCKTKEGISNLLDAIKE-RTGKLGHSEDYVLLEERQRYHFETIVRCLDKTLHLLKEGAP 417

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +I  + +  A   +G++ G VD E++L  IFSKFC+GK
Sbjct: 418 AEIYIQEINYALAEIGEVNGKVDTEEVLGRIFSKFCVGK 456


>gi|327460276|gb|EGF06613.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK1057]
          Length = 457

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 258/459 (56%), Gaps = 22/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSDLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +    +  +  +S+ +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTVEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           + ADL+LL+   N       ++ +   K+ + I +  K+DL      E D L      IS
Sbjct: 301 QEADLVLLVLNANEPLTDQDRQLLEISKDSNRIILLNKTDLEEKI--ELDQLPTDVIKIS 358

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
               + ++++  +I  +   +    +   +  S+ RH+  + + +  L+  +   E    
Sbjct: 359 VLHNQNIDKIEERINHLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEVGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|115314929|ref|YP_763652.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           holarctica OSU18]
 gi|122325057|sp|Q0BLL9|MNME_FRATO RecName: Full=tRNA modification GTPase mnmE
 gi|115129828|gb|ABI83015.1| GTP-binding protein [Francisella tularensis subsp. holarctica
           OSU18]
          Length = 450

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 157/465 (33%), Positives = 254/465 (54%), Gaps = 43/465 (9%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + K+TI A++T      I IIR+SG    ++ E + KK+   PR A+    +  D  I+D
Sbjct: 2   YTKDTIVAIATPQGNGGIGIIRISGIDALEIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GEF+ RAF N K
Sbjct: 60  HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARIAKAGEFTERAFLNNK 118

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++EA +DF EEE
Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178

Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
                D +  SS +E+   IL +KN         K G I+  G  ++++G  NAGKSSL 
Sbjct: 179 INFLEDQKIHSSLEEIYKVILAIKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR   ++
Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291

Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341
           + AD +L + +  +  ++ F              PK+ID  ++  K DL       + +H
Sbjct: 292 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 351

Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395
           + IS+    G+    E ++NK+     N+      SI  + +RH+  ++    ++++A  
Sbjct: 352 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLAKE 405

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 406 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|284053846|ref|ZP_06384056.1| tRNA modification GTPase TrmE [Arthrospira platensis str. Paraca]
          Length = 469

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 155/477 (32%), Positives = 250/477 (52%), Gaps = 48/477 (10%)

Query: 1   MNHEKETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-- 56
           ++ + ETI A++T  +P   +I I+R+SG     + + + K     P  +S R  +G   
Sbjct: 4   ISTKSETIAAIATAIVPQQGSIGIVRMSGAEAVAIAKTLFKAPGNQP-WSSHRILYGYIH 62

Query: 57  ---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
                +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF
Sbjct: 63  HPHTQQLVDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQ-LCLQAGARLATPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF-- 171
           + RAF NG++DL +AES+A+L+ +++      ++ G+ G+L+       D + H+RS   
Sbjct: 122 TLRAFLNGRLDLTQAESVAELVGAQSPQAASAALAGLRGKLA-------DPIHHLRSLCL 174

Query: 172 -----IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
                IEA +DF  EED+   +  E+++ +  +   ++  +     GE++R G K+ I+G
Sbjct: 175 DILAEIEARVDF--EEDLPPLNESEIIHQLQEVLQQLTDILDTADRGELLRTGLKVAIVG 232

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N GKSSL NA ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIR++DD VE+
Sbjct: 233 RPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRKSDDKVEQ 292

Query: 287 EGIKRTFLEVENADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSD-LYSTYTEEY 339
            G++R+ +  ++ADL+L   +        + EI    KN   I +  KSD L S   E  
Sbjct: 293 IGVERSQIAAQSADLVLFTLDCEKGWTEGENEIYQQVKNRPIIVVMNKSDRLSSAQLENL 352

Query: 340 DHLI--------------SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLS 384
              I              ++   +G+ +L   I  ++ +   +        ++R    L+
Sbjct: 353 RQAIINKLDIKPSLIIATAATLNQGITDLETSILNAVHTENLQSANLEFAINQRQAAALT 412

Query: 385 QTVRYLEMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +    LE       D    D    +LR A  +LG++TG    E +LD IFS+FCIGK
Sbjct: 413 RAKIALEQVENTIGDRLPFDFWTIDLRGAIHALGEVTGEEVTESVLDRIFSRFCIGK 469


>gi|325695846|gb|EGD37737.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK160]
          Length = 479

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 260/459 (56%), Gaps = 22/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 24  ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 83

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 84  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 142

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 143 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 202

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       ++ +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 203 DYPEYDDVEEMTTQLMREKTAEFEDLLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 262

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 263 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 322

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           + ADL+LL+   +       K+ +   ++ + I +  K+DL      E D L      IS
Sbjct: 323 QEADLVLLVLNASEPLTDQDKQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDVIKIS 380

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
               + ++++  +I  +   +    +   +  S+ RH+  + + +  L+  +   E    
Sbjct: 381 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 440

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 441 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 479


>gi|261206911|ref|ZP_05921600.1| tRNA modification GTPase mnmE [Enterococcus faecium TC 6]
 gi|289567290|ref|ZP_06447669.1| tRNA modification GTPase TrmE [Enterococcus faecium D344SRF]
 gi|294616665|ref|ZP_06696436.1| tRNA modification GTPase TrmE [Enterococcus faecium E1636]
 gi|260078539|gb|EEW66241.1| tRNA modification GTPase mnmE [Enterococcus faecium TC 6]
 gi|289160909|gb|EFD08830.1| tRNA modification GTPase TrmE [Enterococcus faecium D344SRF]
 gi|291590485|gb|EFF22223.1| tRNA modification GTPase TrmE [Enterococcus faecium E1636]
          Length = 465

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 265/469 (56%), Gaps = 42/469 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLD-- 57
           E +TI A+ST     AISI+RLSG    Q+ + +     K+    P   ++ Y   +D  
Sbjct: 7   EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSH-TIHYGHVVDPK 65

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++R
Sbjct: 66  SNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++
Sbjct: 125 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL 
Sbjct: 185 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 244

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +
Sbjct: 245 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 304

Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-YDHL------- 342
             ADLILL+    + + ++ E  +     +  I +  K+DL +   +E    L       
Sbjct: 305 AEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEPVF 364

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398
            IS    +GL    ++++S +S+ F    FS  + +R   ++S T  +  LE ASL+ + 
Sbjct: 365 SISVAKNDGL----DRLESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 416

Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                D G+  D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 417 VIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465


>gi|327295863|ref|XP_003232626.1| mitochondrial GTPase [Trichophyton rubrum CBS 118892]
 gi|326464937|gb|EGD90390.1| mitochondrial GTPase [Trichophyton rubrum CBS 118892]
          Length = 594

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 127/320 (39%), Positives = 187/320 (58%), Gaps = 35/320 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-----GRI 60
           TI+A+ST    +AI+IIR+SGP C  + + +C  +K P PR A+LR  +          +
Sbjct: 46  TIYALSTAPGRAAIAIIRISGPYCIPIYKALCPNRKLPKPRFAALRTIYEPGKPVSADNV 105

Query: 61  LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--------LRLANPG 111
           LD G L+  FP+P + TGED  E HVHGG AV+  IL  ++K  +        +R A PG
Sbjct: 106 LDSGALVFHFPAPNTVTGEDVLELHVHGGPAVIKSILGAISKCASPVDAPSASIRYAEPG 165

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+RRAF N ++DL + E+L + ++++TE QRRL++ G +  LS+ Y QW  +L + R  
Sbjct: 166 EFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDILSTRYEQWRKQLLYARGE 225

Query: 172 IEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +EA +DFSE+    E V +F S  V   +  L + I+ HI     GE++R+G K+ +LG 
Sbjct: 226 LEALIDFSEDQHFDESVDDFISS-VTGQVDSLLHQINLHIKNASKGELLRSGIKVALLGA 284

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--------- 278
            NAGKSSL N +  +D AIV+   GTTRD++ + +DL G+L K  D AG+R         
Sbjct: 285 PNAGKSSLLNQIVGRDAAIVSSEAGTTRDIVDVGIDLGGWLCKFGDMAGLRSKLSQSQIA 344

Query: 279 ------ETDDIVEKEGIKRT 292
                  T   +E+EGI+R 
Sbjct: 345 AQGHVVSTVGKIEEEGIRRA 364


>gi|304385851|ref|ZP_07368195.1| tRNA modification GTPase TrmE [Pediococcus acidilactici DSM 20284]
 gi|304328355|gb|EFL95577.1| tRNA modification GTPase TrmE [Pediococcus acidilactici DSM 20284]
          Length = 486

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 148/464 (31%), Positives = 261/464 (56%), Gaps = 33/464 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRI- 60
           E +TI A+ST      ISIIR+SG +  +V   I + K    + AS    +G  +D    
Sbjct: 29  EFDTIAAISTPPGEGGISIIRISGVNALKVASQIYRGKD-LAKVASHTINYGHVVDPATD 87

Query: 61  --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ ++ V  +P ++T ED  E + HGGI   N IL+ +  + + RLA PGEF+ RAF
Sbjct: 88  EEIDEVMVSVMRAPHTYTKEDVVEINCHGGIVATNRILQLILGL-DARLAKPGEFTERAF 146

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+   +++++ + G LS L       +  + + +E ++D+
Sbjct: 147 LNGRIDLSQAEAVMDLIRAKTDQSMKVALDQLDGNLSHLIKNLRQDILDVLAQVEVNIDY 206

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +++ +    + +K  ++  ++  K G+++R+G    I+GH N GKSS+ N 
Sbjct: 207 PEYDDVETMTTRLLKEKAIEVKAKVNQLLATAKQGKVLRDGLATAIIGHPNVGKSSILNH 266

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVTD+ GTTRDV+   ++++G  +K+ DTAGI ET+D VEK G+ R+   ++ 
Sbjct: 267 LLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETEDKVEKIGVDRSRKALQQ 326

Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLIS 344
           ADL++L+ + +       ++ +    N+  I +  K+DL           Y  E + + S
Sbjct: 327 ADLVILVLDSSVPLRDEDRQLLDQTANMQRIVVLNKTDLPTKINLNELQKYASEAEIIKS 386

Query: 345 SFTGE-GLEELINKIKSI-----LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           S     G ++L ++I  +     + N    +   + ++ RH+  L QTV  L+ + L+  
Sbjct: 387 SAVAPLGTKDLEDRIAKLFFAGSIENSSNNV---MVTNARHIGLLQQTVTALD-SVLDGI 442

Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + G+  D++  ++  A   LG+ITG    ++LLD +FS+FC+GK
Sbjct: 443 EAGMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK 486


>gi|295398145|ref|ZP_06808194.1| tRNA modification GTPase TrmE [Aerococcus viridans ATCC 11563]
 gi|294973664|gb|EFG49442.1| tRNA modification GTPase TrmE [Aerococcus viridans ATCC 11563]
          Length = 463

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 153/459 (33%), Positives = 252/459 (54%), Gaps = 26/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFG-----LDGR 59
           +TI A+S+     AI I+RLSG     + + + K  +K    + S    +G      DG+
Sbjct: 7   DTIAAISSAPGEGAIGIVRLSGDDALAIADKVYKLGQKKLSTQDSHTIHYGHIVDPKDGQ 66

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ ++ V   P++FT ED  E + HGGI   N +LE L       LA PGEF++RAF 
Sbjct: 67  EIDEVMVSVMREPKTFTREDIVEINTHGGIVATNRVLE-LVLREGATLAEPGEFTKRAFI 125

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    L+++ + G+LS+L       + +  + +E ++D+ 
Sbjct: 126 NGRIDLTQAEAVMDLIRAKTDRSMDLAVKQLDGKLSNLIENLRQDILNTLAQVEVNIDYP 185

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  + K +      +K+ I   +S  K G+I+R+G    I+G  N GKSSL NAL
Sbjct: 186 EYDDVEEMTLKLLGEKTTIIKDRIDGLLSTAKQGKILRDGISTAIVGRPNVGKSSLLNAL 245

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            +++ AIVTDI GTTRD +   +++ G  +K+ DTAGIR+T+D+VE+ G++R+   +  A
Sbjct: 246 LREEKAIVTDIEGTTRDTVEEYINIRGVPLKLVDTAGIRDTEDVVERIGVERSKKALMEA 305

Query: 300 DLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-------DHLISS- 345
           +L+LLL           ++ +S  ++   I I  K DL S   +E        D +I++ 
Sbjct: 306 ELVLLLLNQSEALTAGDRELLSLTQDHKRIIIMNKIDLPSQLLKESLLEWVEEDEIIATS 365

Query: 346 -FTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402
             T EG++ L  KI     S +  +   +  S+ RH+  L +  + L+    N  D G+ 
Sbjct: 366 MMTQEGIDALEEKIADYFFSGQSGEKDATYVSNARHIDLLQKASQSLDEVR-NGIDMGMP 424

Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D+I  +   A   LG+I G    ++LL  +FS+FC+GK
Sbjct: 425 VDLIQIDFTRAWEILGEIIGENAPDELLTQLFSQFCLGK 463


>gi|282881766|ref|ZP_06290424.1| tRNA modification GTPase TrmE [Peptoniphilus lacrimalis 315-B]
 gi|281298376|gb|EFA90814.1| tRNA modification GTPase TrmE [Peptoniphilus lacrimalis 315-B]
          Length = 459

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 157/459 (34%), Positives = 262/459 (57%), Gaps = 28/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGL---DGRI 60
           +TI A+ST    + I+I+R SG +  ++ + I K K     K S   ++ +G    + +I
Sbjct: 5   DTIAAISTAVGEAGIAIVRTSGDNSVEIVDKIFKAKSKKKLKDSENRKFIYGHIYDNDKI 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L +    P S++GE+  E H HGGI  V  IL  L      RLA  GEF++R F N
Sbjct: 65  IDEVLAVKMLGPHSYSGENIVEIHCHGGIVAVRRILN-LLLANGARLAQKGEFTKRGFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++TE    +SM+ + G +S    +    L  +++ I A++DF E
Sbjct: 124 GRIDLSQAEAVIDLIKAKTEDSFDISMKQLEGSISKEVEKIEKNLVGMQALIVANIDFPE 183

Query: 181 EEDVQNFSSKEV--LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E V++ +  E+   ND + L  +I   ++    G+++R G   +ILG  N GKSSL N 
Sbjct: 184 DE-VEDATYDELKRRNDEITL--NIRKLLNNAGRGKLLREGINTLILGKPNVGKSSLLNG 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           + K + AIVTDIPGTTRD +   ++L+G L+K++DTAGIR+TDD VEK G+K    ++++
Sbjct: 241 MLKYERAIVTDIPGTTRDTIEDYINLDGLLLKVTDTAGIRQTDDEVEKIGVKIARDKIKD 300

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHL-I 343
           ADL++++ ++      + ++ +   +N   +FI  K DL +  ++E         D+L +
Sbjct: 301 ADLVIVIFDLSRPFNKDDREILDLIQNKKALFIMNKDDLQARVSDEDIKDLLNDRDYLKL 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
           S    E ++ + N IK +  S +  +      ++ RH+  L + ++ +E   L+ E +  
Sbjct: 361 SVRNPEEIKLVENAIKDMFFSGEIIQKDQVYVNNIRHIDALKKALKTMEETRLDLENEVF 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD++  NL  A   + KITG +  E +LD +FS+FCIGK
Sbjct: 421 LDLVEVNLEEALEEISKITGEITTEDVLDRVFSEFCIGK 459


>gi|229917461|ref|YP_002886107.1| tRNA modification GTPase TrmE [Exiguobacterium sp. AT1b]
 gi|229468890|gb|ACQ70662.1| tRNA modification GTPase TrmE [Exiguobacterium sp. AT1b]
          Length = 459

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 148/458 (32%), Positives = 254/458 (55%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD----GR 59
           E +TI A+ST     AI I+RLSG    +    +   K      +   ++  L     G 
Sbjct: 3   EFDTITAISTPMGEGAIGIVRLSGDLAVETVNNVFSGKDLTTVDSHTIHYGTLKYPDTGE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ ++ +  +P++FT ED  E + HGG+  VN +LE +   P++RLA PGEF++RAF 
Sbjct: 63  IVDEVMVSIMRAPKTFTREDVVEINCHGGVVAVNRVLELILDQPDIRLAEPGEFTKRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    ++M  M G LS L  +   +L    + +E ++D+ 
Sbjct: 123 NGRIDLSQAEAVMDLIRAKTDRAMNVAMAQMEGRLSRLVRELRQQLLETIAAVEVNIDYP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            E D +  +   V      +K  +   +   + G+I+R G    I+G  N GKSSL N L
Sbjct: 183 -EYDAEEMTQAIVEEKAGEVKRVLEQLLETARQGKILREGLATAIIGRPNVGKSSLMNTL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVT+I GTTRD +   ++++G  +K+ DTAGIRET+DIVE+ G++++   +E A
Sbjct: 242 VQETKAIVTEIAGTTRDTIEEYVNVKGVPLKLIDTAGIRETEDIVERIGVEKSRKALEAA 301

Query: 300 DLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTY-TEEYDHLISS----FTG 348
           DL+LL+    + +  + E  F   K ++ I I  K+DL     + + + L +      T 
Sbjct: 302 DLVLLVLNGHEGLTVEDEALFEAVKGMNAIIIINKTDLPQNMDSSKLEKLAAGRPIVATS 361

Query: 349 EGLEELINKIKSILSNKF-----KKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGL 402
             L+E I+ +++ ++N F     +    +  S+ RH+  + +T+  ++ A  +   +  +
Sbjct: 362 LLLDEGIDALEAAIANLFFAKGVESQDMTYISNARHIQLIKRTIGQIDEALGSAVMNMPI 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +LR A  +LG+I G    E L+D +FS+FC+GK
Sbjct: 422 DMVQIDLRRAWDTLGEINGDTVQESLIDQLFSQFCLGK 459


>gi|170077787|ref|YP_001734425.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7002]
 gi|205829178|sp|B1XKC3|MNME_SYNP2 RecName: Full=tRNA modification GTPase mnmE
 gi|169885456|gb|ACA99169.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7002]
          Length = 460

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 156/484 (32%), Positives = 241/484 (49%), Gaps = 77/484 (15%)

Query: 6   ETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           +TI A+++  +P+  +I I+RLSG +   +   + +       + S R  +G        
Sbjct: 5   DTIVAIASAVVPNQGSIGIVRLSGAAALPIARQLFQDPGQQTWE-SHRILYGYVRHPQTQ 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ LL++  +P SFT ED  EFH HGGI  V  +L+ L      RLA PGEF+ RAF
Sbjct: 64  TIVDEALLLLMLAPRSFTAEDVVEFHCHGGIIPVQQVLQ-LCLGAGARLATPGEFTLRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSS----LYGQWIDKLTHIRSFIEA 174
            NG+IDL +AES+A+L+ +++    ++++ G+ G+L+     L GQ +D L  +    EA
Sbjct: 123 LNGRIDLTQAESVAELVGAKSPQSAQVALAGIQGKLAQPIQQLRGQCLDILAEV----EA 178

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF  E+D+      ++  D+  +   ++  +     GE++R G K+ I+G  N GKSS
Sbjct: 179 RIDF--EDDLPPLDEPQIQRDLTQVLEKVAQILQTSDRGELLRTGLKVAIVGRPNVGKSS 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NA ++ D AIVTD+PGTTRDV+   L ++G  V++ DTAGIR+T+D VEK G+ R+  
Sbjct: 237 LLNAWSRSDRAIVTDLPGTTRDVVESQLVVQGIPVQVLDTAGIRDTEDAVEKIGVARSLA 296

Query: 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
             + ADLIL                ID     T +D      E +  ++++   + L  +
Sbjct: 297 ASQQADLILF--------------TIDAAVGWTAAD-----QEIFQRIVATKANQPLILI 337

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG------------- 401
           +NKI  I   +  ++P  +    +      Q V  LE A  N    G             
Sbjct: 338 LNKI-DIGQPEAIEIPPQVQGVVKTAAAQHQGVDELETAIANLVQAGKVGAADLDFAINQ 396

Query: 402 -------------------------LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436
                                    LD    +LR A  +LG+ITG    E +LD IFS+F
Sbjct: 397 RQAAALAQAQQALIQVRETIAQGLPLDFWTIDLRSAIQALGEITGEGVTESVLDRIFSRF 456

Query: 437 CIGK 440
           CIGK
Sbjct: 457 CIGK 460


>gi|116329464|ref|YP_799184.1| tRNA modification GTPase TrmE [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116329932|ref|YP_799650.1| tRNA modification GTPase TrmE [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122282295|sp|Q04W28|MNME_LEPBJ RecName: Full=tRNA modification GTPase mnmE
 gi|122282756|sp|Q04XE4|MNME_LEPBL RecName: Full=tRNA modification GTPase mnmE
 gi|116122208|gb|ABJ80251.1| tRNA modification GTPase TrmE [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123621|gb|ABJ74892.1| tRNA modification GTPase TrmE [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 456

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 156/458 (34%), Positives = 242/458 (52%), Gaps = 27/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-------PRKASLRYFFGLDG 58
           +TI AVST + P AI IIR+SGP    +       K  F       PR A ++  F +  
Sbjct: 3   DTIAAVSTASGPGAIGIIRMSGPGALSISSSFLFSKNGFLSPSDIQPRIA-IQCVFQIGD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R +D+ L   F +P S+TGED  EFH HG   ++   L+ + +    R A  GEFSRRAF
Sbjct: 62  RKIDQILFFYFKTPNSYTGEDLCEFHFHGNPILLREALDAIFR-AGARPAKQGEFSRRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL   E++  LIS+ +  +  L+ + + GE+S L      +L  +++  EA++DF
Sbjct: 121 LNGKLDLTGVEAIGRLISARSRFELELAQKNVFGEVSRLTSNLRSQLISLKAECEAEIDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S E D+   S +E    I  +K    + I++    E +    +IV+ G  N GKSSL N 
Sbjct: 181 STE-DLTYESLEERKVRIEGVKTFCQTVIAKSNSAEKVIQQLRIVLYGEPNTGKSSLMNV 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  KD +I+++IPGTTRD ++ ++ LEG  V++ DTAG+RET+D +E+ GI+R+  E ++
Sbjct: 240 LLGKDRSIISEIPGTTRDYISEEILLEGIPVRLVDTAGVRETEDHIERLGIERSEKEFQS 299

Query: 299 ADLILLLKEINSKKE---------------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
           AD+ L L +++ K+E               I     ID        +L+S   +     I
Sbjct: 300 ADIRLFLIDVSKKEEWKKFIAKAKGRLEGSILVANKIDIRDSSWNPNLFSDVKDLIICEI 359

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
           S  T EG+  L+++I+   +     +   +   +R  YH    VR L+    L E+    
Sbjct: 360 SCKTKEGIPILLDEIQKKAAT-MGHVEDYVLLEERQRYHFETIVRCLDKTLRLIEEGAPA 418

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I  + +  A   +G++ G VD E++L  IFSKFCIGK
Sbjct: 419 EIYIQEMNYALSEIGEVNGRVDTEEVLGRIFSKFCIGK 456


>gi|270289896|ref|ZP_06196122.1| tRNA modification GTPase TrmE [Pediococcus acidilactici 7_4]
 gi|270281433|gb|EFA27265.1| tRNA modification GTPase TrmE [Pediococcus acidilactici 7_4]
          Length = 464

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 148/464 (31%), Positives = 261/464 (56%), Gaps = 33/464 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRI- 60
           E +TI A+ST      ISIIR+SG +  +V   I + K    + AS    +G  +D    
Sbjct: 7   EFDTIAAISTPPGEGGISIIRISGVNALKVASQIYRGKD-LAKVASHTINYGHVVDPATD 65

Query: 61  --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ ++ V  +P ++T ED  E + HGGI   N IL+ +  + + RLA PGEF+ RAF
Sbjct: 66  EEIDEVMVSVMRAPHTYTKEDVVEINCHGGIVATNRILQLILGL-DARLAKPGEFTERAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+   +++++ + G LS L       +  + + +E ++D+
Sbjct: 125 LNGRIDLSQAEAVMDLIRAKTDQSMKVALDQLDGNLSHLIKNLRQDILDVLAQVEVNIDY 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +++ +    + +K  ++  ++  K G+++R+G    I+GH N GKSS+ N 
Sbjct: 185 PEYDDVETMTTRLLKEKAIEVKAKVNQLLATAKQGKVLRDGLATAIIGHPNVGKSSILNH 244

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVTD+ GTTRDV+   ++++G  +K+ DTAGI ET+D VEK G+ R+   ++ 
Sbjct: 245 LLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETEDKVEKIGVDRSRKALQQ 304

Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLIS 344
           ADL++L+ + +       ++ +    N+  I +  K+DL           Y  E + + S
Sbjct: 305 ADLVILVLDSSVPLRDEDRQLLDQTANMQRIVVLNKTDLPTKINLNELQKYASEAEIIKS 364

Query: 345 SFTGE-GLEELINKIKSI-----LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           S     G ++L ++I  +     + N    +   + ++ RH+  L QTV  L+ + L+  
Sbjct: 365 SAVAPLGTKDLEDRIAKLFFAGSIENSSNNV---MVTNARHIGLLQQTVTALD-SVLDGI 420

Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + G+  D++  ++  A   LG+ITG    ++LLD +FS+FC+GK
Sbjct: 421 EAGMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK 464


>gi|253702732|ref|YP_003023921.1| tRNA modification GTPase TrmE [Geobacter sp. M21]
 gi|251777582|gb|ACT20163.1| tRNA modification GTPase TrmE [Geobacter sp. M21]
          Length = 455

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 237/460 (51%), Gaps = 32/460 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
           ++TI A+ST      I I+R+SGP+  Q+   I   K     K S R+ +G       G 
Sbjct: 4   RDTIAAISTPVGEGGIGIVRISGPASLQIARSIFNAKSNGGLK-SHRFSYGEVVQPGTGD 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ + +   +P S+T ED  E   HGG  VV+ IL  L      R A PGEF++RAF 
Sbjct: 63  LVDEAMAVYMKAPNSYTREDVVEIQCHGGTLVVSRILS-LVISQGARPAEPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL++AE++ D+ISS T+    L+     G LS       + + +  +++EA +DF 
Sbjct: 122 NGRIDLVQAEAVMDVISSRTDASLALAQHQREGLLSRRISTVKEGIVYALAYVEALIDFP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+ DV      +VL  +     ++ + I+    G ++R+G  +VI G  N GKSSL N L
Sbjct: 182 ED-DVNVAVETDVLGKVAPALAELDALITGFDEGRVLRDGVSVVIAGKPNVGKSSLLNTL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K+  AIVT +PGTTRD++   +++ G  VK+ DTAGIRE+DD VE+EG++ +   +  A
Sbjct: 241 LKEKRAIVTSVPGTTRDLIEEVVNINGLPVKLLDTAGIRESDDQVEQEGVRLSLDRIPKA 300

Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGT-KSDLYSTYTEEYDHLI 343
           DL+L               +L+ + SK  I      D        SD ++         I
Sbjct: 301 DLVLFVIDGSSVFGVEDATILQAVGSKSCIVVRNKSDLPLAAELPSDCFAPVVA-----I 355

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S+ TGEG+ +L + I +     +      F   S  RH   L +    L+    N E   
Sbjct: 356 STHTGEGVPQLRDAISNAFMHGHAIDGREFVALSKARHRDALLKARESLQSFVANLESGV 415

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++++  +LR A  ++G++TG    + +LD IFS FCIGK
Sbjct: 416 NMELLPVDLRDALDAVGEVTGETTADDVLDRIFSSFCIGK 455


>gi|293364063|ref|ZP_06610799.1| tRNA modification GTPase TrmE [Mycoplasma alligatoris A21JP2]
 gi|292552553|gb|EFF41327.1| tRNA modification GTPase TrmE [Mycoplasma alligatoris A21JP2]
          Length = 453

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 157/456 (34%), Positives = 252/456 (55%), Gaps = 26/456 (5%)

Query: 6   ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A+S+G+ +   ISIIR+SGP    + + I K K    +  +       +  +LD+ 
Sbjct: 3   DTIAAISSGSKINQPISIIRISGPDSVNIMKKIFKGKIGEDKTITFGNIVNNNQEVLDEV 62

Query: 65  LLIVFPSPE--------SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           L++ F   +        ++ GE+  E + HGGI V N ILE L      RLA PGEF+RR
Sbjct: 63  LVMWFIGVKKGLEIEYKNYVGEELVEINCHGGIVVTNSILE-LILSSGARLALPGEFTRR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGK+DL++AE++ DLI ++++ Q  +S+   +G+ S L  +++DKL ++    E ++
Sbjct: 122 AFLNGKMDLVKAEAIHDLIMAKSQKQAHMSVNKFTGKTSDLLSKFLDKLNYLIGLCEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+    + +L  I  L  +IS  +   K  + I  G K+ ILG  N GKSSL 
Sbjct: 182 DYPEYDDVEQLDQEIMLKSIENLATEISEVLEISKRSQKIFEGIKVAILGKPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  ++ AIVTDI GTTRD++     L+G L  + DTAG+R++D+++E+ GIK++  ++
Sbjct: 242 NALVSENKAIVTDIAGTTRDLIETSYQLDGILFTLVDTAGLRKSDELIEQIGIKKSLEQI 301

Query: 297 ENADLIL-LLKEINSKKEI-------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           + ADLIL ++  +N++ E        S  +N  +I I  K DL      + D +++S   
Sbjct: 302 KKADLILHVIDPLNNEDEFDLKIEQESKKENKTYIKIINKKDLIIGEKVKSDLVLTSALN 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL--DI 404
             + +L  +I S  SN        I ++ R +  + +    L  A  SLN    GL  D+
Sbjct: 362 NDIIDLEKEIISKYSN-INLDDERILNNTRQISLIEEAKNNLNNAIKSLN---LGLTFDV 417

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I  ++  A   + +I G V+ E LLD +F  FC+GK
Sbjct: 418 IIVDIYNAWEKISEIKGNVNKEDLLDSMFKNFCLGK 453


>gi|325689629|gb|EGD31633.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK115]
          Length = 457

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 153/464 (32%), Positives = 255/464 (54%), Gaps = 32/464 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKN-LSKVASHTLNYGHIVDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +  ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++
Sbjct: 61  QNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+     +++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSDLINNTRREILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKA 299

Query: 296 VENADLILL------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL      L     K+ +   ++ + I +  K+DL      E D L      I
Sbjct: 300 LQEADLVLLVLNASELLTDQDKQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPADAIKI 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIP------SHKRHLYHLSQTVRYLEMASLN- 396
           S    +     INKI+  ++  F K    +       S+ RH+  + + +  L+  +   
Sbjct: 358 SVLHNQN----INKIEERINQLFFKNAGIVEQDATYLSNARHISLIEKALESLQAVNQGL 413

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E    +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 414 EMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|189426684|ref|YP_001953861.1| tRNA modification GTPase TrmE [Geobacter lovleyi SZ]
 gi|189422943|gb|ACD97341.1| tRNA modification GTPase TrmE [Geobacter lovleyi SZ]
          Length = 460

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 161/461 (34%), Positives = 246/461 (53%), Gaps = 29/461 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG-----LD 57
           ++TI A++T      + I+R+SGP   Q+    F     K      S R F+G     LD
Sbjct: 4   RDTIAAIATPLGSGGVGIVRVSGPDAEQIGRKLFKGSGTKNGGGFESHRLFYGRLVNPLD 63

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+G+ ++  +P S+T ED  E H HGG  +V  +L+        RLA PGEF+RRA
Sbjct: 64  DGLIDEGMAVLMRAPRSYTREDVLELHCHGGYYLVRAVLQACISA-GARLAEPGEFTRRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ DLI+S TE    L+     G LS         L    + +EA +D
Sbjct: 123 FLNGRIDLAQAESVMDLIASRTERSLSLAQSQREGHLSRALAALKAPLVESLALVEAHID 182

Query: 178 FSEEE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F E+E D   F + E    I  +   IS  ++    G+++R+G  +++LG  NAGKSSL 
Sbjct: 183 FPEDEVDPAVFEAIE--TGIATVSAGISRLLATFASGKVLRDGVSVLLLGLPNAGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLE 295
           NAL+  D AIV+ +PGTTRD++   + L+G  VK+ D AGIR    D VE+EG++R   +
Sbjct: 241 NALSGTDRAIVSALPGTTRDLIEETVSLQGLPVKVIDAAGIRAHHADCVEQEGVRRALDK 300

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHL-I 343
              ADL+LLL +  +       +  +    + ++ + TKSDL      S          +
Sbjct: 301 ASEADLLLLLVDGTAPLSDELLELATSLAALPYLLVVTKSDLPQLLDLSGLAAPLGVCSV 360

Query: 344 SSFTGEGLEELINKIKS--ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           S+ +  G++ L  +I    + S+ F     ++ S+ RH   L +  R L+  + N+   G
Sbjct: 361 SAKSRAGIDRLAAQIYDHFVQSSAFSSDAAAVISNVRHRDVLVRAQRSLQDFADNQS-LG 419

Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L  +++A +LR A  +LG+ITG    + LLD+IFS FCIGK
Sbjct: 420 LPPELLALDLRTALAALGEITGETTTDDLLDLIFSSFCIGK 460


>gi|241759134|ref|ZP_04757242.1| putative tRNA modification GTPase TrmE [Neisseria flavescens SK114]
 gi|241320553|gb|EER56830.1| putative tRNA modification GTPase TrmE [Neisseria flavescens SK114]
          Length = 300

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 114/286 (39%), Positives = 170/286 (59%), Gaps = 2/286 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  + TI A++T      + +IRLSG +   + + +   K P PR A    F G DG  
Sbjct: 1   MSATQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGHP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+L+ F +P SFTGED  E   HGG  V++ +L    ++   R+A PGEF++RAF N
Sbjct: 61  IDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + ++   R+++  + G  S    + +D L  +R  +EA LDF E
Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    + +    +  L+  + + ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 180 E-DIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             D+AIVTDI GTTRD +   + L G  V I DTAG+RETDD+VE+
Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLNGVPVHIIDTAGLRETDDVVEQ 284


>gi|254373237|ref|ZP_04988726.1| GTP-binding protein [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570964|gb|EDN36618.1| GTP-binding protein [Francisella novicida GA99-3549]
          Length = 450

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 157/465 (33%), Positives = 253/465 (54%), Gaps = 43/465 (9%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + K+TI A++T      I IIR+SG     + E + KK+   PR A+    +  D  I+D
Sbjct: 2   YTKDTIVAIATPQGNGGIGIIRISGIDALAIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GEF+ RAF N K
Sbjct: 60  HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALSCGARMAKAGEFTERAFLNNK 118

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++EA +DF EEE
Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178

Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
                D +  SS +E+   IL +KN         K G I+  G  ++++G  NAGKSSL 
Sbjct: 179 INFLEDQKIHSSLEEIYKVILAVKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR   ++
Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291

Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341
           + AD +L + +  +  ++ F              PK+ID  ++  K DL       + +H
Sbjct: 292 QEADQVLFVTDDYTSSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 351

Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395
           + IS+    G+    E ++NK+     N+      SI  + +RH+  ++    ++++A  
Sbjct: 352 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLAKE 405

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 406 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|62260919|gb|AAX77946.1| unknown protein [synthetic construct]
          Length = 485

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 157/465 (33%), Positives = 253/465 (54%), Gaps = 43/465 (9%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + K+TI A++T      I IIR+SG     + E + KK+   PR A+    +  D  I+D
Sbjct: 28  YTKDTIVAIATPQGNGGIGIIRISGIDALAIAEKLTKKQLK-PRYATFCNVYN-DNEIID 85

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GEF+ RAF N K
Sbjct: 86  HGIIIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 144

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++EA +DF EEE
Sbjct: 145 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 204

Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
                D +  SS +E+   IL +KN         K G I+  G  ++++G  NAGKSSL 
Sbjct: 205 INFLEDQKIHSSLEEIYKVILAVKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 257

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR   ++
Sbjct: 258 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 317

Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341
           + AD +L + +  +  ++ F              PK+ID  ++  K DL       + +H
Sbjct: 318 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 377

Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395
           + IS+    G+    E ++NK+     N+      SI  + +RH+  ++    ++++A  
Sbjct: 378 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLAKE 431

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 432 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 476


>gi|293572712|ref|ZP_06683676.1| tRNA modification GTPase TrmE [Enterococcus faecium E980]
 gi|291607204|gb|EFF36562.1| tRNA modification GTPase TrmE [Enterococcus faecium E980]
          Length = 465

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 153/469 (32%), Positives = 265/469 (56%), Gaps = 42/469 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDGR 59
           E +TI A+ST     AISI+RLSG    Q+ + +     K+    P   ++ Y   +D +
Sbjct: 7   EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYHSGNKRLSEVPSH-TIHYGHIVDPK 65

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++R
Sbjct: 66  SDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++
Sbjct: 125 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL 
Sbjct: 185 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 244

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +
Sbjct: 245 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 304

Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------- 342
             ADLILL+    + + ++ E  +     +  I +  K+DL +   +E  +         
Sbjct: 305 AEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLNKWNENEPVF 364

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398
            IS    +GL    ++++S +S+ F    FS  + +R   ++S T  +  LE ASL+ + 
Sbjct: 365 SISVAKNDGL----DRLESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 416

Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                D G+  D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 417 VIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465


>gi|218960498|ref|YP_001740273.1| tRNA modification GTPase trmE [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729155|emb|CAO80066.1| tRNA modification GTPase trmE [Candidatus Cloacamonas
           acidaminovorans]
          Length = 457

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 164/466 (35%), Positives = 246/466 (52%), Gaps = 35/466 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKAS---LRYFFGL 56
           M+   E I A  T    SAI++IRLSG  C + V     + +K     +    L  F+  
Sbjct: 1   MSKISEVICAPVTPLGFSAIAVIRLSGKGCIELVANHFSQSQKLLSSPSHNLILGTFYAE 60

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G  +D+ L+ VF  P S+TGED  E   HG   +VN IL+ L  + + RLA PGEF+ R
Sbjct: 61  TGEPIDEVLISVFREPHSYTGEDVIEISCHGNPNLVNRILQTL--LLSCRLAKPGEFTLR 118

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGK+DL +AE++ DLI ++     + ++  + G LS    + + ++T +R   E  +
Sbjct: 119 AFLNGKMDLSQAEAVNDLIQAQANQAEKAALMQLKGFLSKYLQELLARITELRIRFELAI 178

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF+++ D+    S  +  ++L +        S G+ G  +R G KI + G  N GKSSLF
Sbjct: 179 DFADQ-DLPLPDSNALYQELLDIIKTAEELKSTGEQGRRLREGIKICLTGAPNVGKSSLF 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL +++ AIVT  PGTTRD L   L L G+ + I DTAG+RE  D +EKEGI +++  +
Sbjct: 238 NALLQQNRAIVTPHPGTTRDYLEEYLSLNGFPIVIYDTAGLREFPDDIEKEGITKSYELM 297

Query: 297 ENADLILLLKEINSKKEI-----------SFPKNI--DFIFIGTKSDLYSTYTEEYDHLI 343
           + +DLIL L E  +               S P ++    + + +K+DL    T +    I
Sbjct: 298 QESDLILYLVEATTVTNPNLQFSDLLSPSSIPPDLHSKTLVVFSKADLMQENTPQIFPGI 357

Query: 344 --SSFTGEGLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             S  T  GL++L + I  + +L+ +    P  I  + RHL  LS+ ++ L  A    K 
Sbjct: 358 YCSVITENGLKDLTDAISKRLMLNTELPNKPIII--NNRHLVALSKCLQSLHRA----KQ 411

Query: 400 C-----GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           C     G + IA  L  AS +L +I G +  + LLD IFS+FCIGK
Sbjct: 412 CLKENQGYEFIAFELISASNALEEILGVITTDDLLDKIFSEFCIGK 457


>gi|219670950|ref|YP_002461385.1| tRNA modification GTPase TrmE [Desulfitobacterium hafniense DCB-2]
 gi|219541210|gb|ACL22949.1| tRNA modification GTPase TrmE [Desulfitobacterium hafniense DCB-2]
          Length = 459

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 158/464 (34%), Positives = 256/464 (55%), Gaps = 36/464 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRY---FFGLDGRI 60
           +TI A++T     +I ++RLSGP   ++ E  F     + +  K++      +F    ++
Sbjct: 3   DTIIALATAVGEGSIHVLRLSGPQAQEIIERAFTPHHPQRWQEKSNFTLHLGYFRAGAKV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L+    +P S+TGED  E + HGG+ V   I+ E   +   RLA  GEF++RAF N
Sbjct: 63  LDEVLIGRMSAPGSYTGEDVYEINCHGGLYVAERIMRECIGL-GARLAEAGEFTKRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL++AE++ DLI+++T+    L++  M G LS       D++    +FIEA +DF E
Sbjct: 122 GKLDLIQAEAIVDLIAAKTDSSADLALAQMEGLLSQKILLLKDQVMETLAFIEAGIDFPE 181

Query: 181 EEDVQNFSSKEVLNDI---LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + DV++     +L  I   L L  D+   +   K G I+R G   VI+G  N GKSSL N
Sbjct: 182 D-DVESLDRDALLQRISKGLELARDL---LDGSKTGRILREGMLTVIVGQPNVGKSSLLN 237

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  ++ AIVTDIPGTTRD +   + + G L+++ DTAG+RE++D+VEK GI+R++  +E
Sbjct: 238 ALMGEERAIVTDIPGTTRDEIRESVTIGGILLQLVDTAGLRESEDLVEKLGIERSWKAME 297

Query: 298 NADLILLLKEINSK---KEISFPKNID--FIFIGTKSDLYSTYTEEYDHLISSFTGE--- 349
            A+LILL+ +   +   +E+      D   I +  K DL     E+ + ++ ++  +   
Sbjct: 298 KAELILLIIQAGQELKAEELKILNQYDQSVIVLINKMDLL-VGKEQGEEVLENYPTQQGV 356

Query: 350 ----------GLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                     G ++L  +IK  +   K +K    + S+ R +  L + V  L     + K
Sbjct: 357 WIPFSVKENLGFKQLEKEIKQRVYQGKAEKTKEPLLSNIRQITALERAVSALANGWDSVK 416

Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + GL  D+++ ++R A   + ++TG    E LLD IFS+FCIGK
Sbjct: 417 N-GLPWDMVSIDIRQALQEISQMTGDSVQESLLDDIFSRFCIGK 459


>gi|71891804|ref|YP_277533.1| tRNA modification GTPase TrmE [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|123641227|sp|Q494C0|MNME_BLOPB RecName: Full=tRNA modification GTPase mnmE
 gi|71795910|gb|AAZ40661.1| GTPase for tRNA modification and thiophene and furan oxidation
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 470

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 171/480 (35%), Positives = 259/480 (53%), Gaps = 50/480 (10%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN+  +T+ A+ST      I IIR+SG S  ++   +  K  P PRKA    F   DG I
Sbjct: 1   MNYTIDTVVAISTPPGRGGIGIIRISGKSVPEIAPKLLGKI-PNPRKAEYLPFLDTDGSI 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-NLRLANPGEFSRRAFE 119
           L++ + + FP P SFTGE+  E H HGG  +++ +LE + K   ++R+A+PGEF++RAF 
Sbjct: 60  LERVIALFFPEPNSFTGENILEIHGHGGQIILDILLERILKTSSDIRIAHPGEFTKRAFL 119

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N KIDL++AE++AD+I + +    + +   + G  S      +++LT++R + E+ +DFS
Sbjct: 120 NNKIDLVQAEAIADIIDATSYQAAKSASNSLQGIFSRKIYIILEQLTNLRMYAESSIDFS 179

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+E +     +++   +  + +D+         G ++R G KIVI G  NAGKSSLFNAL
Sbjct: 180 EDE-ISIIPYEDIKKKLRNIISDVQKMYKSTYHGVLLREGIKIVIAGKPNAGKSSLFNAL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVEN 298
              D AI++ I GTTRD L   + L G    I+DTAG+ +++D+ +E+ G+KRT+ E+ N
Sbjct: 239 VGIDRAIISTISGTTRDTLHEYIQLNGIAFHITDTAGLQKKSDNEIEQIGMKRTWEELSN 298

Query: 299 ADLILLLKEIN--SKKE----------ISFPKN--IDFIFIGTKSDLYSTYTEEYDHLIS 344
           AD IL + + N  + KE          + F KN       I  KSDL  T  +    +I+
Sbjct: 299 ADHILWVIDPNDVTNKENDITLKHVEKVLFCKNKKTPITIIHNKSDL--TKNQIGISIIN 356

Query: 345 SFTGEGLEELINK----IKSILSNKFK-KLPFSIPSH-----------KRHLYHLSQTVR 388
           ++T   L  L N     ++  LSN  K K+     S+           +RHL  L ++ +
Sbjct: 357 NYTIITLSALFNDGTDLLQEYLSNNIKSKIQQDCKSNLSENQGNFIARRRHLNALEKSSK 416

Query: 389 YLEMA--------SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           YL  A        S+NE      + AE+L LA   L KI G    + LL  IFS FCIGK
Sbjct: 417 YLFSAQTQLLSTMSINE------LFAEDLGLAHKELSKIFGKFTPDDLLKRIFSTFCIGK 470


>gi|187931774|ref|YP_001891759.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|208779948|ref|ZP_03247292.1| tRNA modification GTPase TrmE [Francisella novicida FTG]
 gi|254374693|ref|ZP_04990174.1| tRNA modification GTPase trmE family protein [Francisella novicida
           GA99-3548]
 gi|151572412|gb|EDN38066.1| tRNA modification GTPase trmE family protein [Francisella novicida
           GA99-3548]
 gi|187712683|gb|ACD30980.1| GTPase [Francisella tularensis subsp. mediasiatica FSC147]
 gi|208744403|gb|EDZ90703.1| tRNA modification GTPase TrmE [Francisella novicida FTG]
 gi|332678598|gb|AEE87727.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella cf.
           novicida Fx1]
          Length = 450

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 157/465 (33%), Positives = 253/465 (54%), Gaps = 43/465 (9%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + K+TI A++T      I IIR+SG     + E + KK+   PR A+    +  D  I+D
Sbjct: 2   YTKDTIVAIATPQGNGGIGIIRISGIDALAIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GEF+ RAF N K
Sbjct: 60  HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++EA +DF EEE
Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178

Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
                D +  SS +E+   IL +KN         K G I+  G  ++++G  NAGKSSL 
Sbjct: 179 INFLEDQKIHSSLEEIYKVILAVKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR   ++
Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291

Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341
           + AD +L + +  +  ++ F              PK+ID  ++  K DL       + +H
Sbjct: 292 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 351

Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395
           + IS+    G+    E ++NK+     N+      SI  + +RH+  ++    ++++A  
Sbjct: 352 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLAKE 405

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 406 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|56708343|ref|YP_170239.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670814|ref|YP_667371.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457467|ref|ZP_03665940.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370965|ref|ZP_04986969.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875165|ref|ZP_05247875.1| tRNA modification GTPase trmE family protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|81597291|sp|Q5NFF3|MNME_FRATT RecName: Full=tRNA modification GTPase mnmE
 gi|122970893|sp|Q14GV5|MNME_FRAT1 RecName: Full=tRNA modification GTPase mnmE
 gi|56604835|emb|CAG45916.1| tRNA modification GTPase trmE family protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110321147|emb|CAL09299.1| tRNA modification GTPase trmE family protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151569207|gb|EDN34861.1| hypothetical protein FTBG_01711 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841164|gb|EET19600.1| tRNA modification GTPase trmE family protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282159580|gb|ADA78971.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 450

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 157/465 (33%), Positives = 253/465 (54%), Gaps = 43/465 (9%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + K+TI A++T      I IIR+SG     + E + KK+   PR A+    +  D  I+D
Sbjct: 2   YTKDTIVAIATPQGNGGIGIIRISGIDALAIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GEF+ RAF N K
Sbjct: 60  HGIIIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++EA +DF EEE
Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178

Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
                D +  SS +E+   IL +KN         K G I+  G  ++++G  NAGKSSL 
Sbjct: 179 INFLEDQKIHSSLEEIYKVILAVKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR   ++
Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291

Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341
           + AD +L + +  +  ++ F              PK+ID  ++  K DL       + +H
Sbjct: 292 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 351

Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395
           + IS+    G+    E ++NK+     N+      SI  + +RH+  ++    ++++A  
Sbjct: 352 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLAKE 405

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 406 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|332366815|gb|EGJ44556.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK1059]
          Length = 479

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 258/459 (56%), Gaps = 22/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 24  ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 83

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 84  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 142

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      K+ +  + +E ++
Sbjct: 143 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQKILNTLAQVEVNI 202

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ +   + G+I+R G    I+G  N GKSSL 
Sbjct: 203 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 262

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 263 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 322

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           + ADL+LL+   +       ++ +   ++ + I +  K+DL      E D L      IS
Sbjct: 323 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDVIKIS 380

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
               + ++++  +I  +   +    +   +  S+ RH+  + + +  L+  +   E    
Sbjct: 381 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 440

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 441 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 479


>gi|257885581|ref|ZP_05665234.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,501]
 gi|293553541|ref|ZP_06674168.1| tRNA modification GTPase TrmE [Enterococcus faecium E1039]
 gi|257821437|gb|EEV48567.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,501]
 gi|291602296|gb|EFF32521.1| tRNA modification GTPase TrmE [Enterococcus faecium E1039]
          Length = 465

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 265/469 (56%), Gaps = 42/469 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLD-- 57
           E +TI A+ST     AISI+RLSG    Q+ + +     K+    P   ++ Y   +D  
Sbjct: 7   EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSH-TIHYGHIVDPK 65

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++R
Sbjct: 66  SNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++
Sbjct: 125 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL 
Sbjct: 185 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 244

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +
Sbjct: 245 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 304

Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-YDHL------- 342
             ADLILL+    + + ++ E  +     +  I +  K+DL +   +E    L       
Sbjct: 305 AEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEPVF 364

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398
            IS    +GL    ++++S +S+ F    FS  + +R   ++S T  +  LE ASL+ + 
Sbjct: 365 SISVAKNDGL----DRLESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 416

Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                D G+  D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 417 VIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465


>gi|257899265|ref|ZP_05678918.1| tRNA modification GTPase mnmE [Enterococcus faecium Com15]
 gi|257837177|gb|EEV62251.1| tRNA modification GTPase mnmE [Enterococcus faecium Com15]
          Length = 465

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 153/469 (32%), Positives = 265/469 (56%), Gaps = 42/469 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDGR 59
           E +TI A+ST     AISI+RLSG    Q+ + +     K+    P   ++ Y   +D +
Sbjct: 7   EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYHSGNKRLSEVPSH-TIHYGHIVDPK 65

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++R
Sbjct: 66  SDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++
Sbjct: 125 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL 
Sbjct: 185 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 244

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +
Sbjct: 245 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 304

Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------- 342
             ADLILL+    + + ++ E  +     +  I +  K+DL +   +E  +         
Sbjct: 305 AEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLNKWIENEPVF 364

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398
            IS    +GL    ++++S +S+ F    FS  + +R   ++S T  +  LE ASL+ + 
Sbjct: 365 SISVAKNDGL----DRLESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 416

Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                D G+  D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 417 VIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465


>gi|15925702|ref|NP_373236.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156981027|ref|YP_001443286.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255007483|ref|ZP_05146084.2| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|21363015|sp|Q931E1|MNME_STAAM RecName: Full=tRNA modification GTPase mnmE
 gi|166234822|sp|A7X7A8|MNME_STAA1 RecName: Full=tRNA modification GTPase mnmE
 gi|14248487|dbj|BAB58874.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156723162|dbj|BAF79579.1| possible thiophene and furan oxidation protein [Staphylococcus
           aureus subsp. aureus Mu3]
          Length = 459

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 151/462 (32%), Positives = 251/462 (54%), Gaps = 33/462 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62
           +TI ++ST     AI I+RLSGP   ++ + + K K       S    +G    I+D   
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYG---HIIDPES 60

Query: 63  -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
                + ++ V  +P++FT ED  E + HGGI  +N +LE L      R+A PGEF++RA
Sbjct: 61  KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D
Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++ GTTRDVL   +++    +++ DTAGIRET+DIVEK G++R+   + 
Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRSVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI----- 343
            ADLIL +  +N+ + ++          KN D I I  K DL       E   +I     
Sbjct: 300 QADLILFV--LNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPL 357

Query: 344 ---SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398
              S    EG++EL  +I+ +    + +    +  S+ RH+  L Q  + ++ A    E 
Sbjct: 358 IQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAES 417

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 418 GVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459


>gi|15675063|ref|NP_269237.1| tRNA modification GTPase TrmE [Streptococcus pyogenes M1 GAS]
 gi|71910607|ref|YP_282157.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS5005]
 gi|21363025|sp|Q99ZU0|MNME_STRP1 RecName: Full=tRNA modification GTPase mnmE
 gi|13622217|gb|AAK33958.1| putative thiophene degradation protein F [Streptococcus pyogenes M1
           GAS]
 gi|71853389|gb|AAZ51412.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS5005]
          Length = 458

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 146/460 (31%), Positives = 259/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIINP 61

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + S +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLESLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY---DHL-ISS 345
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E    D++ IS 
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360

Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK---DC 400
            T + +  + ++I  +  +     +   +  S+ RH+  + + V+ LE  ++N+      
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGLALGM 418

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|134301618|ref|YP_001121586.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|166991112|sp|A4IX14|MNME_FRATW RecName: Full=tRNA modification GTPase mnmE
 gi|134049395|gb|ABO46466.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 450

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 157/465 (33%), Positives = 253/465 (54%), Gaps = 43/465 (9%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + K+TI A++T      I IIR+SG     + E + KK+   PR A+    +  D  I+D
Sbjct: 2   YTKDTIVAIATPQGNGGIGIIRISGIDALAIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GEF+ RAF N K
Sbjct: 60  HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++EA +DF EEE
Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178

Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
                D +  SS +E+   IL +KN         K G I+  G  ++++G  NAGKSSL 
Sbjct: 179 INFLEDQKIHSSLEEIYKVILAVKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR   ++
Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291

Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341
           + AD +L + +  +  ++ F              PK+ID  ++  K DL       + +H
Sbjct: 292 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 351

Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395
           + IS+    G+    E ++NK+     N+      SI  + +RH+  ++    ++++A  
Sbjct: 352 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLARE 405

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 406 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|327470938|gb|EGF16394.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK330]
          Length = 457

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 259/459 (56%), Gaps = 22/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           + ADL+LL+  ++       K+ +   ++ + I +  K+DL      E D L      IS
Sbjct: 301 QEADLVLLVLNVSEPLTDQDKQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDVIKIS 358

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
               + ++++  +I  +   +    +   +  S+ RH+  + + +  L+  +   E    
Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|118497883|ref|YP_898933.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           novicida U112]
 gi|194323857|ref|ZP_03057633.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           novicida FTE]
 gi|166991111|sp|A0Q7G4|MNME_FRATN RecName: Full=tRNA modification GTPase mnmE
 gi|118423789|gb|ABK90179.1| GTPase of unknown function [Francisella novicida U112]
 gi|194322221|gb|EDX19703.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           novicida FTE]
          Length = 450

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 157/465 (33%), Positives = 253/465 (54%), Gaps = 43/465 (9%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + K+TI A++T      I IIR+SG     + E + KK+   PR A+    +  D  I+D
Sbjct: 2   YTKDTIVAIATPQGNGGIGIIRISGIDALAIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GEF+ RAF N K
Sbjct: 60  HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++EA +DF EEE
Sbjct: 119 LDLTQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178

Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
                D +  SS +E+   IL +KN         K G I+  G  ++++G  NAGKSSL 
Sbjct: 179 INFLEDQKIHSSLEEIYKVILAVKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR   ++
Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291

Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341
           + AD +L + +  +  ++ F              PK+ID  ++  K DL       + +H
Sbjct: 292 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 351

Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395
           + IS+    G+    E ++NK+     N+      SI  + +RH+  ++    ++++A  
Sbjct: 352 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLAKE 405

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 406 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|327462129|gb|EGF08456.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK1]
          Length = 457

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 258/459 (56%), Gaps = 22/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSEVESHTLNYGHIVDPQ 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      +L +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQELLNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           + ADL+LL+   +       ++ +   ++ + I +  K+DL      E D L      IS
Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDAIKIS 358

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
               + ++++  +I  +   +    +   +  S+ RH+  + + +  L+  +   E    
Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|312864738|ref|ZP_07724969.1| tRNA modification GTPase TrmE [Streptococcus downei F0415]
 gi|311099865|gb|EFQ58078.1| tRNA modification GTPase TrmE [Streptococcus downei F0415]
          Length = 456

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 148/464 (31%), Positives = 250/464 (53%), Gaps = 34/464 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDG 58
           +  E +TI A+ST     AI I+RLSG     + + + K K  +  P           D 
Sbjct: 3   ITKEFDTIAAISTPLGEGAIGIVRLSGSQAVSIAKSVFKGKDLESVPSHTINYGHIMEDS 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ ++ V  SP++FT ED  E + HGG+AV N IL+ L +    R+A PGEF++RAF
Sbjct: 63  EIIDEVMVSVMRSPKTFTREDVVEINTHGGLAVTNEILQLLLR-SGARMAEPGEFTKRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ DLI ++T+    +++  + G L +L      ++ +  + +E ++D+
Sbjct: 122 LNGRVDLTQAEAVMDLIRAKTDKAMNIAVSQLDGSLKNLINNTRQEILNTLAQVEVNIDY 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  ++  +       +  ++  ++  K G+I+R G    I+G  N GKSSL N 
Sbjct: 182 PEYDDVEEMTTALMCEKTQEFEELLTRLLATAKRGKILREGLSTAIIGRPNVGKSSLLNN 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++D AIVTD+ GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   +  
Sbjct: 242 LLREDKAIVTDVAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVERSRKALAE 301

Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           ADL+LL+  +N  + +S          K    I +  K+DL      E D L      IS
Sbjct: 302 ADLVLLV--LNGSENLSQQDRDLLDISKEAKRIILINKTDLPQKI--ELDQLPTDAIPIS 357

Query: 345 SFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
               + +E +  +I  +  +     +   +  S+ RH+  + +      +ASL E + GL
Sbjct: 358 VLNNQNMEAIEERINDLFFDNAGLVEKDATYLSNSRHISLIEKA-----LASLQEVNQGL 412

Query: 403 ------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 413 EAGMPVDLLQVDMTRCWEILGEITGDAAPDELITQLFSQFCLGK 456


>gi|324992824|gb|EGC24744.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK405]
 gi|327489811|gb|EGF21601.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK1058]
          Length = 457

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 259/459 (56%), Gaps = 22/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSEVESHTLNYGHIVDPQ 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           + ADL+LL+   +       ++ +   ++ + I +  K+DL      E D L      IS
Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDAIKIS 358

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
               + ++++  +I  +   +    +   +  S+ RH+  + + +  L+  +   E    
Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|167759571|ref|ZP_02431698.1| hypothetical protein CLOSCI_01928 [Clostridium scindens ATCC 35704]
 gi|167662798|gb|EDS06928.1| hypothetical protein CLOSCI_01928 [Clostridium scindens ATCC 35704]
          Length = 471

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 164/475 (34%), Positives = 252/475 (53%), Gaps = 42/475 (8%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL--- 56
           NH   TI A+ST    + I I+R+SG   F + +  +  KK K   ++ S    +G    
Sbjct: 3   NHYDTTIAAISTAMSNAGIGIVRMSGCDAFDIADRVYKGKKNKKLSQQQSHTIHYGYITD 62

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G+ +D+ L+++  SP S+TGED+ E + HGG+ +V  ILE L +    R A PGEF++R
Sbjct: 63  RGKEIDEVLVMIMRSPHSYTGEDTIEINCHGGVYIVKKILELLIE-NGARPAQPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI S+ E   + S+  + G + +       ++ +  +FIE  L
Sbjct: 122 AFLNGRLDLSQAEAVGDLIVSQNEYALQSSINQLKGSIKNKINNIRKEIIYHTAFIETAL 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D  E   V  +  +E+ + +  L+NDI   +     G +I+ G + VILG  NAGKSSL 
Sbjct: 182 DDPEHISVDEYG-EELESVVRKLRNDIEKLLRTCDDGRLIKEGIQTVILGKPNAGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVT+I GTTRDVL   ++L+G  + I DTAGIR+T D+VEK G+++     
Sbjct: 241 NVLLGQDKAIVTEIAGTTRDVLEEHINLQGISLNIMDTAGIRDTKDVVEKIGVEKAKSHA 300

Query: 297 ENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDH--------- 341
           + ADLI+ + + +++ +      +S  K    I +  KSDL    T+E            
Sbjct: 301 DKADLIIYVIDASTELDENDYEILSLIKGKPSIILLNKSDLDMIVTKEKVQEAYFASNPA 360

Query: 342 ----------LISSFTGEGLEELINKIKSILSNKFK-KLPFS---IPSHKRHLYHLSQTV 387
                      IS+   +G++EL  K+K +    F+  L F+     ++ RH   L    
Sbjct: 361 KKSGEPIPIIEISAKNKQGIDELEEKLKDMF---FEGNLSFNDEIYITNIRHKTALQDAY 417

Query: 388 RYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LE  +    D G+  D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 418 NALERVT-ESIDAGMPEDFYSIDLMDAYESLGSITGETIGEDLVNEIFSKFCMGK 471


>gi|322385140|ref|ZP_08058787.1| thiophene and furan oxidation protein ThdF [Streptococcus cristatus
           ATCC 51100]
 gi|321270764|gb|EFX53677.1| thiophene and furan oxidation protein ThdF [Streptococcus cristatus
           ATCC 51100]
          Length = 520

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 254/460 (55%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I + K    + AS    +G     
Sbjct: 65  ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFRGKD-LSKVASHTLNYGHIVDP 123

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +  ILD+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 124 QNQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 182

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+     +++ + G LS L      ++ +  + +E +
Sbjct: 183 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSDLINSTRQEILNTLAQVEVN 242

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  +++ +    L  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 243 IDYPEYDDVEEATTEIIREKTLEFEQLLTHLLKTARRGKILREGISTAIIGRPNVGKSSL 302

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 303 LNNLLREDKAIVTDIEGTTRDVIEEYVNINGVPLKLIDTAGIRETDDLVEQIGVERSKKA 362

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   +       K+ +   ++ + I +  K+DL      E D L      I
Sbjct: 363 LQEADLVLLVLNASEPLTDQDKQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPANAIKI 420

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S    + ++++ ++I  +       L    +  S+ RH+  + + V  L+  +   E   
Sbjct: 421 SVLHNQNIDKIEDRINQLFFENAGILEQDATYLSNARHISLIKKAVESLQAVNQGLELGM 480

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 481 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 520


>gi|324994536|gb|EGC26449.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK678]
          Length = 457

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 259/459 (56%), Gaps = 22/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           + ADL+LL+   +       ++ +   ++ + I +  K+DL      E D L      IS
Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDAIKIS 358

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
               + ++++  +I  +   +    +   +  S+ RH+  + + +  L+  +   E    
Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|331092106|ref|ZP_08340937.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402307|gb|EGG81878.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 463

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 161/462 (34%), Positives = 251/462 (54%), Gaps = 31/462 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL--DGR 59
           +K+TI A++T    + I I+R+SG    ++ +  F  KK+K F  + +    +G   DG 
Sbjct: 8   KKDTIAAIATAMSSAGIGIVRISGREAIEIIQKIFRGKKEKNFAEEKTYTIHYGYIADGE 67

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ L+++  +P S+TGED+ E   HGGI VV  I+E + K    R A PGEF++RAF
Sbjct: 68  EIIDEVLVMLMKAPHSYTGEDTVEIDCHGGIYVVKKIMETVIKY-GARPAEPGEFTKRAF 126

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ D+I S+ E   + S+  + G +    G+  +++ +  +FIE  LD 
Sbjct: 127 LNGKMDLSQAEAVIDIIDSKNEYALKSSVSQLKGSVQKKIGEIREEILYHTAFIETALDD 186

Query: 179 SEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
            E   V  +    K+V++++L    +I   +     G II+ G K VI+G  NAGKSSL 
Sbjct: 187 PEHISVDGYGETLKKVVDNLL---EEIRRLLISADNGRIIKEGIKTVIVGKPNAGKSSLL 243

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  ++ AIVTDI GTTRDVL  ++ L+G  + I DTAGIRET D+VEK G+ +     
Sbjct: 244 NVLVGEERAIVTDIEGTTRDVLEENIQLQGVSLNIMDTAGIRETKDVVEKIGVDKAKNHA 303

Query: 297 ENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH--------L 342
             ADLI+ + +       N ++ I   ++   I +  KSDL    T++           +
Sbjct: 304 NEADLIIYVADASRPLDDNDEEIIEMIRDKQAIVLLNKSDLDMVVTKKELQEKLNKPMIV 363

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLN-EK 398
           IS+   +G++EL   +K +  +    + F+     ++ RH   L      LE   ++ E 
Sbjct: 364 ISAKEEQGIKELEETLKEMFFH--GDISFNDEVYITNIRHKTALQDAAESLEKVLISIEN 421

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 422 GMPEDFYSIDLLDAYESLGSITGETIGEDLVNEIFSKFCMGK 463


>gi|169635758|emb|CAQ16332.1| t-RNA modification GTPase protein [Bacillus megaterium]
          Length = 457

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 151/463 (32%), Positives = 239/463 (51%), Gaps = 29/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   ETI AV+T   P  + I+R+SGP    +      +++  PR A    F+G +  +
Sbjct: 1   MSVAAETIAAVATAQGPGGVGIVRISGP-LASIAAKAFSERELKPRYAHYGPFYGENREV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++    LA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCIQL-GCHLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  +  ++ ++S  + +     ++ +G  ++  G  +AGKSS  +   
Sbjct: 179 EE-IDFLADGHVLGMLDTVRQELSPVMREAGPDALLPDGMTVLTAGRPHAGKSSC-STHC 236

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +   AIVT+I GTTRDVL   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 237 RTRSAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVQRALKAIGEAD 296

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISS 345
            +LL+ +  + +               P       I  K+DL          +  H+  S
Sbjct: 297 RVLLVVDATAPEADDPFALWPEFLQQRPDPAKVTLIRNKADLTGEDIRLQVCDDGHVTIS 356

Query: 346 FT------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397
            +      G+GLE L + +K+ +  + +    S  + +RHL  L      LE   A L  
Sbjct: 357 LSARSTDAGDGLELLRDHLKACMGYE-QTSESSFSARRRHLEALRHASDALEHGRAQLTL 415

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              G +++AE+LR A  SLG+ITG    + LL  IFS F IGK
Sbjct: 416 AGAG-ELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFRIGK 457


>gi|89897801|ref|YP_521288.1| hypothetical protein DSY5055 [Desulfitobacterium hafniense Y51]
 gi|122480417|sp|Q24M98|MNME_DESHY RecName: Full=tRNA modification GTPase mnmE
 gi|89337249|dbj|BAE86844.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 459

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 157/464 (33%), Positives = 256/464 (55%), Gaps = 36/464 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRY---FFGLDGRI 60
           +TI A++T     +I ++RLSGP   ++ E  F     + +  K++      +F    ++
Sbjct: 3   DTIIALATAVGEGSIHVLRLSGPQAQEIIERAFTPHHPQRWQEKSNFTLHLGYFRAGAKV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L+    +P S+TGED  E + HGG+ +   I+ E   +   RLA  GEF++RAF N
Sbjct: 63  LDEVLIGRMSAPGSYTGEDVYEINCHGGLYIAERIMRECIGL-GARLAEAGEFTKRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL++AE++ DLI+++T+    L++  M G LS       D++    +FIEA +DF E
Sbjct: 122 GKLDLIQAEAIVDLIAAKTDSSADLALAQMEGLLSQKILLLKDQVMETLAFIEAGIDFPE 181

Query: 181 EEDVQNFSSKEVLNDI---LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + DV++     +L  I   L L  D+   +   K G I+R G   VI+G  N GKSSL N
Sbjct: 182 D-DVESLDRDALLQRISKGLELARDL---LDGSKTGRILREGMLTVIVGQPNVGKSSLLN 237

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  ++ AIVTDIPGTTRD +   + + G L+++ DTAG+RE++D+VEK GI+R++  +E
Sbjct: 238 ALMGEERAIVTDIPGTTRDEIRESVTIGGILLQLVDTAGLRESEDLVEKLGIERSWKAME 297

Query: 298 NADLILLLKEINSK---KEISFPKNID--FIFIGTKSDLYSTYTEEYDHLISSFTGE--- 349
            A+LILL+ +   +   +E+      D   I +  K DL +   E  + ++ ++  +   
Sbjct: 298 KAELILLIIQAGQELKAEELKILSQYDQSVIVLINKMDLLAG-KERGEEVLENYPTQQGV 356

Query: 350 ----------GLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                     G ++L  +IK  +   K +K    + S+ R +  L + V  L     + K
Sbjct: 357 WIPFSVKENLGFKQLEKEIKQRVYQGKAEKTKEPLLSNIRQITALERAVSALANGWDSVK 416

Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + GL  D+++ ++R A   + ++TG    E LLD IFS+FCIGK
Sbjct: 417 N-GLPWDMVSIDIRQALQEISQMTGDSVQESLLDDIFSRFCIGK 459


>gi|318040678|ref|ZP_07972634.1| tRNA modification GTPase TrmE [Synechococcus sp. CB0101]
          Length = 449

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 142/442 (32%), Positives = 242/442 (54%), Gaps = 31/442 (7%)

Query: 19  AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG-----LDGRILDKGLLIVFPS 71
           +++I+R+SGP    + +  F     +P+    S R  +G      +G  +D+ LL++  +
Sbjct: 19  SVAIVRVSGPEAEAIGQRLFSAPGDQPW---ESHRVLYGYVCDPANGERVDEALLLLMRA 75

Query: 72  PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131
           P SFT E   EFH HGG+  V  +LE L  +   R A PGEFS+RAF NG++DL  AE++
Sbjct: 76  PRSFTRETVVEFHCHGGLISVQRVLE-LVLVSGARRALPGEFSQRAFLNGRLDLTRAEAI 134

Query: 132 ADLISSETEMQRRLSMEGMSGEL----SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           ++L+++ +    +L+M G+ G L    S+L  + +D+L  +    EA +DF  E+D+   
Sbjct: 135 SELVTARSRRAAQLAMAGLDGGLQVRISALRERLLDQLAEL----EARVDF--EDDLPPL 188

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
               V  ++  ++ D+   ++ G+ G+++R G ++ I+G  N GKSSL N L+  + AIV
Sbjct: 189 DGDAVALELQAVRTDLEQLVADGERGQLLREGLRVAIVGRPNVGKSSLLNRLSCSERAIV 248

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           TD+PGTTRD++  +L L+G  + + DTAGIR T D VE+ GI+R+   ++ AD +LLL +
Sbjct: 249 TDLPGTTRDLVESELVLQGVPLTLLDTAGIRATTDRVEQIGIERSRSALQVADAVLLLFD 308

Query: 308 INSK--------KEISFPKNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELINKI 358
           +++          E+  P+ +  + +G K+D L      + D  IS+ TG G  EL++++
Sbjct: 309 LSAGWCDDDAALGEL-VPEGVPVLVVGNKADQLTGAPAVQADVCISALTGAGETELVHQL 367

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
            +   +   +      + ++     +             +    D    +LR A  +LG+
Sbjct: 368 LARCGHSDPQGVQLALNRRQQDLAAAAAASLSASLEAASQQLPWDFWTIDLRAAVRALGE 427

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           ITG    E +LD +FS+FCIGK
Sbjct: 428 ITGEEVSEAVLDRVFSRFCIGK 449


>gi|228994203|ref|ZP_04154103.1| tRNA modification GTPase mnmE [Bacillus pseudomycoides DSM 12442]
 gi|229000273|ref|ZP_04159842.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock3-17]
 gi|229007799|ref|ZP_04165384.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock1-4]
 gi|228753459|gb|EEM02912.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock1-4]
 gi|228759605|gb|EEM08582.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock3-17]
 gi|228765655|gb|EEM14309.1| tRNA modification GTPase mnmE [Bacillus pseudomycoides DSM 12442]
          Length = 458

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 146/456 (32%), Positives = 252/456 (55%), Gaps = 22/456 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GRIL 61
           +TI A+ST     AI+I+R+SG    +    I K K      + ++ Y   +D    +++
Sbjct: 4   DTIAAISTALGEGAIAIVRVSGEDAIEKVNRIFKGKDLTAVSSHTIHYGHIVDLDTDQVI 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           ++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF NG
Sbjct: 64  EEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ DLI ++T+    ++M  M G LS L G+   ++    + +E ++D+ E 
Sbjct: 123 RIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSKLIGRLRQEILETLAHVEVNIDYPEY 182

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +DV+  +   ++     ++ +I   +   K G+I+R G    I+G  N GKSSL N+L +
Sbjct: 183 DDVEEMTHNILIEKATHVRGEIKKILETSKQGKILREGIATAIIGRPNVGKSSLLNSLVQ 242

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   +  ADL
Sbjct: 243 EKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMGQADL 302

Query: 302 ILLL----KEINSKKEISFP--KNIDFIFIGTKSDL-------YSTYTEEYDHLISS--F 346
           +L++    + + ++ E  F   +  DFI I  K+DL         T     + +I++   
Sbjct: 303 VLIVVNYSEALTNEDEDLFRAVRGKDFIVIVNKTDLPKQIDMKRVTELAGKNRMITTSLI 362

Query: 347 TGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404
             +G++EL   I  +      +    +  S+ RH+  L+Q  + + +     E    +D+
Sbjct: 363 EEKGVDELEKAIADLFFEGTIESADMTYVSNARHIGLLTQAEKTIGDAIEAIENGVPIDM 422

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 423 VQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|157149742|ref|YP_001450550.1| tRNA modification GTPase TrmE [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189036214|sp|A8AXP0|MNME_STRGC RecName: Full=tRNA modification GTPase mnmE
 gi|157074536|gb|ABV09219.1| tRNA modification GTPase TrmE [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 457

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 145/460 (31%), Positives = 257/460 (55%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +  +LD+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++
Sbjct: 61  QNQEVLDEVMIGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  +++ +       +  ++S ++  + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEMTTQLMREKTAEFEELLTSLLNTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   +       K+ +   ++ + I +  K+DL      E D L      I
Sbjct: 300 LQEADLVLLVLNASEPLTDQDKQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDIIKI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           S    + ++++  +I  +   +    +   +  S+ RH+  + + +  L+  +   E   
Sbjct: 358 SVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|320040661|gb|EFW22594.1| mitochondrial GTPase [Coccidioides posadasii str. Silveira]
          Length = 481

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 126/332 (37%), Positives = 186/332 (56%), Gaps = 36/332 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-----DGRI 60
           TI+A+ST    +AI+I+R+SGP+C QV + +C     P PR A+LR             +
Sbjct: 60  TIYALSTAPGRAAIAIVRVSGPACIQVYKGLCPGSPLPKPRYATLRTLCDPTQSPSSNAV 119

Query: 61  LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM----------PNLRLAN 109
           LD G L++ FP+P++ TGED  E H+HG  AV+  +L  + K             +R A 
Sbjct: 120 LDSGALVLYFPAPKTVTGEDVLELHIHGSPAVIKAVLNAIPKCLENKIETGLESCIRYAE 179

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G S  LS+ Y  W  +L + R
Sbjct: 180 PGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENWRQQLLYAR 239

Query: 170 SFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
             +EA +DFSE+    E V +F    V   +  L N I  HI     GE++R+G KI +L
Sbjct: 240 GELEALIDFSEDQHFDESVDDFMIS-VTGQVRKLLNQIDVHIENASKGELLRSGIKIALL 298

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI-- 283
           G  NAGKSSL N +  ++ AIV+   GTTRD++ + +DL G+L K  D AG+R       
Sbjct: 299 GAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSAPPKLI 358

Query: 284 ------------VEKEGIKRTFLEVENADLIL 303
                       VE+EGI+R       +DL++
Sbjct: 359 GEERKDSTVIGEVEREGIRRAKARALESDLVI 390


>gi|300814730|ref|ZP_07094978.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511117|gb|EFK38369.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 459

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 157/459 (34%), Positives = 261/459 (56%), Gaps = 28/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGL---DGRI 60
           +TI A+ST    + I+I+R SG +  ++ + I K K     K S   ++ +G    + +I
Sbjct: 5   DTIAAISTAVGEAGIAIVRTSGDNSVEIVDKIFKAKSKKKLKDSENRKFIYGHIYDNDKI 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L +    P S++GE+  E H HGGI  V  IL  L      RLA  GEF++R F N
Sbjct: 65  IDEVLAVKMLGPHSYSGENIVEIHCHGGIVAVRRILN-LLLANGARLAQKGEFTKRGFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++TE    +SM+ + G +S    +    L  +++ I A++DF E
Sbjct: 124 GRIDLSQAEAVIDLIKAKTEDSFDISMKQLKGSISKEVEKIEKNLVGMQALIVANIDFPE 183

Query: 181 EEDVQNFSSKEV--LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E V++ +  E+   ND + L  +I   ++    G+++R G   +ILG  N GKSSL N 
Sbjct: 184 DE-VEDATYDELKRRNDEITL--NIRELLNNAGRGKLLREGINTLILGKPNVGKSSLLNG 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           + K + AIVTDIPGTTRD +   ++L+G L+K++DTAGIR+TDD VEK G+K    +++ 
Sbjct: 241 MLKYERAIVTDIPGTTRDTIEDYINLDGLLLKVTDTAGIRQTDDEVEKIGVKIARDKIKE 300

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHL-I 343
           ADL++++ ++      + ++ +   +N   +FI  K DL +  ++E         D+L +
Sbjct: 301 ADLVIVIFDLSRPFNKDDREILDLIQNKKALFIMNKDDLQARVSDEDIKELLNDRDYLKL 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
           S    E ++ + N IK +  S +  +      ++ RH+  L + ++ +E   L+ E +  
Sbjct: 361 SVRNPEEIKLVENAIKDMFFSGEIIQKDQVYVNNIRHIDALKKALKTMEETRLDLENEVF 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD++  NL  A   + KITG +  E +LD +FS+FCIGK
Sbjct: 421 LDLVEVNLEEALEEISKITGEITTEDVLDRVFSEFCIGK 459


>gi|86130381|ref|ZP_01048981.1| tRNA modification GTPase, ThdF family [Dokdonia donghaensis MED134]
 gi|85819056|gb|EAQ40215.1| tRNA modification GTPase, ThdF family [Dokdonia donghaensis MED134]
          Length = 462

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 161/467 (34%), Positives = 254/467 (54%), Gaps = 39/467 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFG--LDG-R 59
           ++TI A+++ A   AI++IR+SGP    +C  I K    K    + +     G  +DG R
Sbjct: 4   QDTIVALASPAGAGAIAVIRVSGPESLAICSPIFKSVSGKVLANQKTHTIHLGHIMDGQR 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ L+ +F    S+TGE + E   HG   +   I++ L +    R A  GEF+ R+F 
Sbjct: 64  TIDEVLVSLFKGTNSYTGEPTVEISCHGSSYIQQEIIQLLLR-SGCRAAKAGEFTLRSFI 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S+ E   +++M+ M G  S+   Q   +L +  S IE +LDFS
Sbjct: 123 NGKMDLSQAEAVADLIASDNEGAHQIAMQQMRGGFSNEIAQLRQELLNFASLIELELDFS 182

Query: 180 EEEDVQNFSSKEVLNDIL-----FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           EE DV+ F+ +    D++      LK  I S  +    G +I+NG  + I+G  N GKS+
Sbjct: 183 EE-DVE-FADRTQFKDLIARITKVLKRLIDSFAT----GNVIKNGIPVAIVGEPNVGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL  ++ AIV+DI GTTRD +  +L + G   +  DTAGIRET+D++E  GIK+TF 
Sbjct: 237 LLNALLNEERAIVSDIAGTTRDTIEDELSIGGIGFRFIDTAGIRETEDVIEGLGIKKTFE 296

Query: 295 EVENADLILLL--------KEINSKKEISFPKNI----DFIFIGTKSDLYS-TYTEEYD- 340
           +++ A +++LL        +  + K EI   KN       + +  K D  S T   E   
Sbjct: 297 KIKQAQVVVLLHTASEVIHQTASVKLEIEKIKNQFPLKPLLVVANKIDALSPTELNEIAT 356

Query: 341 -----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                HL+S+   +G++ L NK+   ++    +   +I ++ RH   L + +  +E    
Sbjct: 357 KIDNLHLLSAKENQGVDALKNKLLDFVNTGALRNDETIVTNSRHYDALLKALEEIEKVQY 416

Query: 396 NEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D GL  D++A ++R A    G+ITG V  ++LL  IF+ FCIGK
Sbjct: 417 G-LDTGLSGDLMAIDIREALYHFGEITGQVTNDELLGNIFANFCIGK 462


>gi|257878640|ref|ZP_05658293.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,230,933]
 gi|257881306|ref|ZP_05660959.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,502]
 gi|257893099|ref|ZP_05672752.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,408]
 gi|258615276|ref|ZP_05713046.1| tRNA modification GTPase TrmE [Enterococcus faecium DO]
 gi|260558221|ref|ZP_05830417.1| tRNA modification GTPase mnmE [Enterococcus faecium C68]
 gi|293563245|ref|ZP_06677697.1| tRNA modification GTPase TrmE [Enterococcus faecium E1162]
 gi|293569165|ref|ZP_06680471.1| tRNA modification GTPase TrmE [Enterococcus faecium E1071]
 gi|294619739|ref|ZP_06699144.1| tRNA modification GTPase TrmE [Enterococcus faecium E1679]
 gi|294623753|ref|ZP_06702581.1| tRNA modification GTPase TrmE [Enterococcus faecium U0317]
 gi|257812868|gb|EEV41626.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,230,933]
 gi|257816964|gb|EEV44292.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,502]
 gi|257829478|gb|EEV56085.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,408]
 gi|260075395|gb|EEW63701.1| tRNA modification GTPase mnmE [Enterococcus faecium C68]
 gi|291588134|gb|EFF19976.1| tRNA modification GTPase TrmE [Enterococcus faecium E1071]
 gi|291594009|gb|EFF25478.1| tRNA modification GTPase TrmE [Enterococcus faecium E1679]
 gi|291596707|gb|EFF27930.1| tRNA modification GTPase TrmE [Enterococcus faecium U0317]
 gi|291604784|gb|EFF34266.1| tRNA modification GTPase TrmE [Enterococcus faecium E1162]
          Length = 465

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 265/469 (56%), Gaps = 42/469 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLD-- 57
           E +TI A+ST     AISI+RLSG    Q+ + +     K+    P   ++ Y   +D  
Sbjct: 7   EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSH-TIHYGHIVDPK 65

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++R
Sbjct: 66  SNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++
Sbjct: 125 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL 
Sbjct: 185 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 244

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +
Sbjct: 245 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 304

Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-YDHL------- 342
             ADLILL+    + + ++ E  +     +  I +  K+DL +   +E    L       
Sbjct: 305 AEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEPVF 364

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398
            IS    +GL    ++++S +S+ F    FS  + +R   ++S T  +  LE ASL+ + 
Sbjct: 365 SISVAKNDGL----DRLESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 416

Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                D G+  D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 417 VIAGIDSGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465


>gi|119467792|ref|XP_001257702.1| mitochondrial GTPase (Mss1), putative [Neosartorya fischeri NRRL
           181]
 gi|119405854|gb|EAW15805.1| mitochondrial GTPase (Mss1), putative [Neosartorya fischeri NRRL
           181]
          Length = 604

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 126/313 (40%), Positives = 184/313 (58%), Gaps = 29/313 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK--ASLRYFFGLD-----GR 59
           TI+A+ST    +AI+++R+SG +C Q+   +C    P PR   A++R  +          
Sbjct: 66  TIYALSTAPGRAAIAVVRVSGSACVQIYRALCPSA-PLPRARVAAVRTLYDPTQEPSANT 124

Query: 60  ILDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAK--MPN--LRLANPGEFS 114
           +LD G L++ FP P++ TGED  E H+HGG A+V  +L  +A+   P   +R A PGEF+
Sbjct: 125 VLDAGALVLYFPGPKTVTGEDVLELHLHGGPAIVKSVLAAIARSNRPESLVRYAEPGEFT 184

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAF N ++DL + E+L D ++++TE QRRL++ G S  LS  Y  W  +L + R  +EA
Sbjct: 185 RRAFMNNRLDLPQIEALGDTLTADTEQQRRLAVRGASDALSRRYESWRQQLLYARGELEA 244

Query: 175 DLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            +DFSE+    E  + F  + V   +  L+  +  HI     GE++RNG KI +LG  NA
Sbjct: 245 LIDFSEDQYFDESPEEFV-RSVAGQVRALQTQLRLHIENASKGELLRNGIKIALLGAPNA 303

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---------ETD 281
           GKSSL N +  K+ AIV+   GTTRD++ + +DL G+  K+ D AGIR         ET 
Sbjct: 304 GKSSLLNRIVGKEAAIVSTEEGTTRDIVDVGVDLGGWYCKLGDMAGIRSEKSASTGQETA 363

Query: 282 DI--VEKEGIKRT 292
            I  VEKEGI+R 
Sbjct: 364 VIGAVEKEGIRRA 376


>gi|256370677|ref|YP_003108502.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri SMDSEM]
 gi|256009469|gb|ACU52829.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri SMDSEM]
          Length = 461

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 163/467 (34%), Positives = 256/467 (54%), Gaps = 33/467 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGLD 57
           M  EK+TI A++T +   AI++IR+SG +  ++   I      KK     +    F  + 
Sbjct: 1   MLKEKDTIVAIATPSGYGAIAVIRMSGKNSLKIINNIFVSISLKKKLSENSINLGFIKIK 60

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +I+DK L++VF  P+S+TGED  E   HG + + N IL  +      RLANPGEF+ RA
Sbjct: 61  KKIIDKVLILVFKKPKSYTGEDVVEISCHGSMYIQNKILSIIID-QGARLANPGEFTLRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGKIDL +AES+ D+++SET     L++  M G +S++      K+  + S IE +LD
Sbjct: 120 FINGKIDLCQAESILDIVNSETLFSHELAINQMRGNISNIIKNLRKKIIDLLSLIELELD 179

Query: 178 FSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           FSEE    +     +++L++I+   ND+   I   K+G  ++NG  + I+G +N GKS+L
Sbjct: 180 FSEENLFVLNKREFQKILDNIIKKINDL---IKSFKIGNALKNGILVSIIGCTNVGKSTL 236

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFL 294
           FN + K + +IV++I GTTR+ +  +L + G   +  DTAGI  +T D +EK GIK+T+ 
Sbjct: 237 FNKILKDERSIVSNIAGTTRNYIEENLIINGIKFRFIDTAGINNKTKDYIEKLGIKKTYK 296

Query: 295 EVENADLIL----------LLKEINSKKEISFPKNIDFIFIG--------TKSDLYSTYT 336
            ++ +DLIL          ++K + S +E  +PK   FI I          K      Y 
Sbjct: 297 NIKKSDLILYVFDCLNEEIIMKNLKSLQE-KYPKKKIFILINKYDLIKKNKKKINLRNYQ 355

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMAS 394
           ++    IS+  G G++ L+++I +  S K   L  +  I +  RH  +L + + YL    
Sbjct: 356 DKDIFHISAKYGYGIKNLLDEI-TFFSKKITSLKENSIIITQTRHYENLKKAIFYLYKVK 414

Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + EK    + +  +L+ A   LG+I G V  E +L  IFSKFCIGK
Sbjct: 415 EDLEKSISPEFLYISLQTALECLGQIIGEVTNEDILSNIFSKFCIGK 461


>gi|229035142|ref|ZP_04189088.1| tRNA modification GTPase mnmE [Bacillus cereus AH1271]
 gi|228728208|gb|EEL79238.1| tRNA modification GTPase mnmE [Bacillus cereus AH1271]
          Length = 458

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 253/459 (55%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +    I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSILRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL  T   E        + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQTIDMERVTELAAGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGAIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|15828484|ref|NP_325844.1| tRNA modification GTPase TrmE [Mycoplasma pulmonis UAB CTIP]
 gi|21363023|sp|Q98RJ5|MNME_MYCPU RecName: Full=tRNA modification GTPase mnmE
 gi|14089426|emb|CAC13186.1| THIOPHENE AND FURAN OXIDATION PROTEIN THDF [Mycoplasma pulmonis]
          Length = 442

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 155/456 (33%), Positives = 247/456 (54%), Gaps = 37/456 (8%)

Query: 6   ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY-FFGLDGRILDK 63
           + I A+S+GA +  AISIIRLSGP  F++ + I   K    +  S+ Y +   D  I+D+
Sbjct: 3   DNIVAISSGAKVNQAISIIRLSGPDVFEIMKKIFTGK--VGKDKSITYGYIKNDQEIIDE 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L++ F  P +F GED+ E + HGGI V   ILE +      RLA PGEFS+RAF NGK+
Sbjct: 61  VLVMWFKGPNNFVGEDTVEINAHGGIVVSTLILETIV-ANGARLAEPGEFSKRAFLNGKL 119

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE++ DLI S+T  Q +++++    + S      I+KL  I    E ++D+ E +D
Sbjct: 120 DLVKAEAINDLIHSKTVQQAKINIKKFDRKTSMFINDLINKLVFIIGTCEVNIDYPEYDD 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++  + + +L  +  L+ +IS  +   +   I  N   I I+G  N GKSSL NAL ++D
Sbjct: 180 IEELTLEVLLPKLKDLEKEISKAVELSERSRIYFNEIPIAIVGRPNVGKSSLLNALLEED 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +IVT+I GTTRDV+     L G    + DTAGIR +++++EK GI+++F +++++++I+
Sbjct: 240 KSIVTNIEGTTRDVVEARFVLNGINFLLKDTAGIRHSENVIEKIGIEKSFKQIQDSEIII 299

Query: 304 LLKEINSKKEISFPKNI-------DFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELI 355
            L  + ++ E  F + I        +I +  K DL S    + D + IS+  GE      
Sbjct: 300 HLV-LENQDEDDFERKIKELSEGKKYIRVINKKDLISKDKIKKDQIYISALKGE------ 352

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-----SLNEKDCGL------DI 404
                 +S   K + F   +     + + Q  R L +      S+ E   GL      D+
Sbjct: 353 ------ISELEKAILFEYQNIDLDDFRMIQNTRQLALIKSSLFSIQEAIKGLEQGYTPDV 406

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  ++  A   L  I G  D E+LLD +FS FC+GK
Sbjct: 407 VIVDITKAWEDLVNIVGRADNEKLLDSMFSNFCLGK 442


>gi|171779779|ref|ZP_02920735.1| hypothetical protein STRINF_01616 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281881|gb|EDT47315.1| hypothetical protein STRINF_01616 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 457

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 153/469 (32%), Positives = 260/469 (55%), Gaps = 42/469 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + + K    + AS    +G     
Sbjct: 2   ITKEFDTIAAISTPLGEGAIGIVRLSGTDALAIAQKVYRGKD-LSKVASHTINYGHIVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +  ILD+ ++ V  +P++FT E+  E + HGG+AV N IL+ L +    RLA PGEF++
Sbjct: 61  DNDEILDEVMVSVMLAPKTFTRENVIEINTHGGVAVTNEILQLLLRQ-GARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSKLINDTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + ++  K G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEMTTALIREKTQEFQTLLENLLATAKRGKILREGLSTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   
Sbjct: 240 LNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKA 299

Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342
           +E ADL+LL+  +NS + ++          K+ + I +  K+DL      E D L     
Sbjct: 300 LEEADLVLLV--LNSSEPLTDQDRALLELSKDSNRIILLNKTDLPEKI--EADELPDDVI 355

Query: 343 -ISSFTGEG---LEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
            IS    +    +EE IN++      I+      L     S+ RH+  + + V+ L+  S
Sbjct: 356 RISVLKNQNIDLIEERINQLFFDNAGIVEKDATYL-----SNARHIGLIEKAVQSLQ--S 408

Query: 395 LNE---KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +NE       +D++  +L      LG+ITG    ++L+  +F++FC+GK
Sbjct: 409 VNEGLKAGMPVDLLQIDLTRCWEILGEITGEAAPDELITKLFTQFCLGK 457


>gi|254369611|ref|ZP_04985622.1| hypothetical protein FTAG_01502 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122565|gb|EDO66700.1| hypothetical protein FTAG_01502 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 450

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 157/465 (33%), Positives = 253/465 (54%), Gaps = 43/465 (9%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + K+TI A++T      I IIR+SG     + E + KK+   PR A+    +  D  I+D
Sbjct: 2   YTKDTIVAIATPQGNGGIGIIRISGIDALAIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GEF+ RAF N K
Sbjct: 60  HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++EA +DF EEE
Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYLEASIDFPEEE 178

Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
                D +  SS +E+   IL +KN         K G I+  G  ++++G  NAGKSSL 
Sbjct: 179 INFLEDQKIHSSLEEIYKVILAIKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR   ++
Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291

Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341
           + AD +L + +  +  ++ F              PK+ID  ++  K DL       + +H
Sbjct: 292 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 351

Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395
           + IS+    G+    E ++NK+     N+      SI  + +RH+  ++    ++++A  
Sbjct: 352 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLAKE 405

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 406 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|255690104|ref|ZP_05413779.1| tRNA modification GTPase TrmE [Bacteroides finegoldii DSM 17565]
 gi|260624386|gb|EEX47257.1| tRNA modification GTPase TrmE [Bacteroides finegoldii DSM 17565]
          Length = 466

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 164/469 (34%), Positives = 250/469 (53%), Gaps = 39/469 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG--LDG- 58
           ++TI A++T A   AI  IR+SGP    +   I K  KP   F  +      FG   DG 
Sbjct: 4   QDTICAIAT-AQGGAIGSIRVSGPEAISITSLIFKPAKPDKLFSDQKPYSLTFGRIYDGD 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ L+ +F +P S+TGEDS E   HG   ++  +L+ L K    R+A PGE+++RAF
Sbjct: 63  EIIDEVLVSLFRTPHSYTGEDSTEITCHGSSYILQQVLQLLIK-KGCRMAQPGEYTQRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE +LDF
Sbjct: 122 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 181

Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +   ++  IS  +    +G  I++G  + I+G +NAGKS+L N
Sbjct: 182 SEE-DVE-FADRSALKKLADEIEQVISRLVQSFNVGNAIKSGVPVAIIGETNAGKSTLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   + + G   +  DTAGIRET+D +E  GI+RTF ++E
Sbjct: 240 VLLNEDKAIVSDIHGTTRDVIEDTISIGGVTFRFIDTAGIRETNDKIESLGIERTFQKLE 299

Query: 298 NADLIL-LLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHLISSFT 347
            A+++L ++  +N        SKK I   +    I +  K+DL     +     L+ +F 
Sbjct: 300 QAEIVLWMVDSVNAASQIEQLSKKIIPRCEGKHLIVVFNKADLIEDVQKSNLSALLENFP 359

Query: 348 GEGLEEL---------INKIKSILSNKFKKLPF-----SIPSHKRHLYHLSQTVRYLEMA 393
            E  E +          N+++ +L N    LP       I ++ RH   LS+ +  +   
Sbjct: 360 QESTEHIYISAKRRENTNELQKMLINA-AHLPTVTQNDVIVTNVRHYEALSKALDAIHRV 418

Query: 394 SLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             N  D  L  D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 419 Q-NGLDSHLSGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 466


>gi|315045147|ref|XP_003171949.1| tRNA modification GTPase mss1 [Arthroderma gypseum CBS 118893]
 gi|311344292|gb|EFR03495.1| tRNA modification GTPase mss1 [Arthroderma gypseum CBS 118893]
          Length = 643

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 120/291 (41%), Positives = 177/291 (60%), Gaps = 20/291 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-----DGRI 60
           TI+A+ST +  +AI+IIR+SGP C  + + +C  +  P PR A+LR  +          I
Sbjct: 94  TIYALSTASGRAAIAIIRVSGPDCISIYKALCPNRNLPKPRFAALRTLYEPGKPVSTNNI 153

Query: 61  LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAK--------MPNLRLANPG 111
           LD G L+  FP+P + TGED  E HVHG  AV+  IL  + K        + ++R A PG
Sbjct: 154 LDSGALVFHFPAPNTVTGEDVLELHVHGSPAVIKSILSAIPKCASSGGVPLASIRYAEPG 213

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+RRAF N ++DL + E+L + ++++TE QRRL++ G +  LS+ Y QW  +L + R  
Sbjct: 214 EFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDTLSTRYEQWRKQLLYARGE 273

Query: 172 IEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +EA +DFSE+    E V++F S  V   +  L   I+ HI     GE++RNG K+ +LG 
Sbjct: 274 LEALIDFSEDQHFDESVEDFISS-VTVQVHNLLRQINLHIKNASKGELLRNGIKVALLGA 332

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            NAGKSSL N +  ++ AIV+   GTTRD++ + +DL G+L K  D AG+R
Sbjct: 333 PNAGKSSLLNQIVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLR 383


>gi|303322326|ref|XP_003071156.1| GTPase family protein [Coccidioides posadasii C735 delta SOWgp]
 gi|240110855|gb|EER29011.1| GTPase family protein [Coccidioides posadasii C735 delta SOWgp]
          Length = 628

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 128/332 (38%), Positives = 188/332 (56%), Gaps = 36/332 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-----DGRI 60
           TI+A+ST    +AI+I+R+SGP+C QV + +C     P PR A+LR             +
Sbjct: 60  TIYALSTAPGRAAIAIVRVSGPACIQVYKGLCPGSPLPKPRYATLRTLCDPTQSPSSNAV 119

Query: 61  LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM----------PNLRLAN 109
           LD G L++ FP+P++ TGED  E H+HG  AV+  +L  + K             +R A 
Sbjct: 120 LDSGALVLYFPAPKTVTGEDVLELHIHGSPAVIKAVLNAIPKCLENKIETGLESCIRYAE 179

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G S  LS+ Y  W  +L + R
Sbjct: 180 PGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENWRQQLLYAR 239

Query: 170 SFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
             +EA +DFSE+    E V +F    V   +  L N I  HI     GE++R+G KI +L
Sbjct: 240 GELEALIDFSEDQHFDESVDDFMIS-VTGQVRKLLNQIDVHIENASKGELLRSGIKIALL 298

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR------- 278
           G  NAGKSSL N +  ++ AIV+   GTTRD++ + +DL G+L K  D AG+R       
Sbjct: 299 GAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSAPPKLI 358

Query: 279 --ETDDI-----VEKEGIKRTFLEVENADLIL 303
             E  D      VE+EGI+R       +DL++
Sbjct: 359 GEERKDSTVIGEVEREGIRRAKARALESDLVI 390


>gi|81300391|ref|YP_400599.1| tRNA modification GTPase TrmE [Synechococcus elongatus PCC 7942]
 gi|93141330|sp|Q8KPU2|MNME_SYNE7 RecName: Full=tRNA modification GTPase mnmE
 gi|81169272|gb|ABB57612.1| tRNA modification GTPase trmE [Synechococcus elongatus PCC 7942]
          Length = 462

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 150/462 (32%), Positives = 246/462 (53%), Gaps = 33/462 (7%)

Query: 6   ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56
           +TI A++T  +P   ++ I+RLSG +  ++    F    ++P+    S R  +G      
Sbjct: 7   DTIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQIAGQQPWE---SHRILYGYIRDPE 63

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            GR++D+ LL+   +P S+T ED  E H HGG+  V   L+ L      RLA PGEF+ R
Sbjct: 64  SGRLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQ-LCIRAGARLAEPGEFTLR 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AES+ADLIS+++    + ++  + G+L     Q  D+   I + +EA +
Sbjct: 123 AFLNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAEVEARI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF  E+D+     + +   +     D+ + +S    GE++R G KI I+G  N GKSSL 
Sbjct: 183 DF--EDDLPPLDLEAIAAQLTAAGADMQAILSTADRGELLRTGLKIAIVGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NA ++ D AIVTD+PGTTRD++   L + G  V++ DTAGIRET D VE+ G++R+    
Sbjct: 241 NAWSRCDRAIVTDLPGTTRDLVESQLIVGGIPVQVLDTAGIRETSDQVEQIGVERSRRAA 300

Query: 297 ENADLILLLKEIN---SKKEISFPKNID---FIFIGTKSDLYSTY--------TEEYDHL 342
           ++ADL+LL  + +   S ++ +  + +     + +  K D  S           +E+  +
Sbjct: 301 QSADLVLLTIDASAGWSAEDQTIWEAVSDRPILLVINKRDRLSEAERHAIALPQQEFKAI 360

Query: 343 ISSFTG--EGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
           + +     +G+E+L   I  ++ +       +    ++R +  L+     L       + 
Sbjct: 361 VWTAAAQQQGIEDLEAAILAAVGTGDLTSANWDWALNQRQVAALTTAQTALRRVEETLQA 420

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LD    +LR A  +LG ITG    E +LD+IFS+FCIGK
Sbjct: 421 QLPLDFWTIDLREAIAALGSITGEEIAESMLDLIFSRFCIGK 462


>gi|329768091|ref|ZP_08259600.1| tRNA modification GTPase mnmE [Gemella haemolysans M341]
 gi|328838246|gb|EGF87858.1| tRNA modification GTPase mnmE [Gemella haemolysans M341]
          Length = 460

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 155/472 (32%), Positives = 254/472 (53%), Gaps = 51/472 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LDG 58
           ETI A+ST     AI I+RLSG   F + E I +  K K     AS    +G        
Sbjct: 3   ETICAISTALGEGAIGIVRLSGDEAFSIAEKIVRLPKGKTVESLASHTINYGNVVDPTTN 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +++ +L+    P ++T ED  E + HGGI  +  +L  L      R+A PGEF++RAF
Sbjct: 63  EKIEEIMLVKMVGPRTYTTEDVIEINCHGGIVTIQKVLA-LCLEHGARMAEPGEFTKRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++   M G LS+L  +   ++  I + +E ++D+
Sbjct: 122 LNGRIDLTQAEAVIDFIKSKTDEASQIANNQMQGRLSTLIKRLRTEILDILTVVEVNIDY 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +D++  ++K +L     ++N + S +   K G+II+ G    I+G  N GKSSL N 
Sbjct: 182 PEYDDLEIETTKTILEKSTSIRNSLESLLETSKQGKIIKEGINTAIIGRPNVGKSSLLNN 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDI GTTRDVL   ++++G  +K+ DTAGIRETDDIVE+ G+KR+   +E 
Sbjct: 242 LLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDDIVEQIGVKRSKEALEK 301

Query: 299 ADLILLLKEINSKKEISFPKN--------------IDFIFIGTKSDLYSTYTEEYDHLI- 343
           ADL+L L  +NS +E++                  ++ + + TK D+       Y+H I 
Sbjct: 302 ADLVLFL--LNSSEELTEDDKELLKLTEGKTTIVILNKLDLETKIDIAEVEKLAYNHPII 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR----YLEMASLNE 397
             S  T +G++EL   I+ +         F   +  +   +LS T +       +ASLN+
Sbjct: 360 KTSMTTYKGIDELEKNIRDLF--------FGGAARPKDATYLSNTRQINLIQRALASLND 411

Query: 398 ----KDCGLDIIAENLRLASVS-----LGKITGCVDVEQLLDIIFSKFCIGK 440
                + GL++   ++ L   +     LG++ G    ++L++ +FS+FC+GK
Sbjct: 412 AIGAAELGLEV---DMVLIDYTNTFNLLGEVIGENSGDELINELFSRFCLGK 460


>gi|326202766|ref|ZP_08192633.1| tRNA modification GTPase TrmE [Clostridium papyrosolvens DSM 2782]
 gi|325986843|gb|EGD47672.1| tRNA modification GTPase TrmE [Clostridium papyrosolvens DSM 2782]
          Length = 460

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 157/466 (33%), Positives = 250/466 (53%), Gaps = 35/466 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGR- 59
           H ++TI A+ST      I +IR+SG   F   + I K  K      S    +G  +D   
Sbjct: 2   HNEDTIAALSTPYGTGGIGVIRISGEKAFSTADKIFKASKAMEEIQSHTVTYGKIVDKES 61

Query: 60  --ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ LL+    P +FT ED  E   HGGI V+N +L+ + K   +R A PGEF++RA
Sbjct: 62  KDIIDEVLLLKMCKPNTFTREDVIELQCHGGIVVINRVLDLIFK-NGVRPAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLI+S+T    + ++  + G LS+        L  + + IE  +D
Sbjct: 121 FLNGRIDLSQAEAIIDLINSKTVESSKAAVSHLEGRLSARLKIIRKTLVGLLAHIEVTVD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D++  + ++VL ++  +K ++ +     + G+I+R G  IVI G  N GKSSL N
Sbjct: 181 YPEH-DIEEITGEKVLENLKNIKGELHTLAGTFERGKILREGLNIVIAGKPNVGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L+    AIVTDIPGTTRD++   +++ G   KI+DTAGIR T D+VEK G+ + +  V 
Sbjct: 240 QLSGNTKAIVTDIPGTTRDIIEEYVNINGIPAKITDTAGIRNTQDVVEKIGVNKAYEAVG 299

Query: 298 NADL--ILLLKEINSKKE----ISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLI 343
            ADL  ++L  E     E    ++  KN   + +  K+DL             E +D ++
Sbjct: 300 QADLTIVVLSAETGIDDEDIEILNLVKNKKALILINKTDLADKEQVNEIKAQLENHDIIL 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFS-----IPSHKRHLYHLSQTVRYLEMASLN 396
             S     G+EEL    ++ +S  F K   S     + ++ RH Y + + +  ++ A LN
Sbjct: 360 KASVINARGIEEL----EATISELFVKGKISGNDEVLLTNSRHKYLVDRAIEDIQQA-LN 414

Query: 397 EKDCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G  LD++  +++  + ++G+ITG    E ++  IFS+FCIGK
Sbjct: 415 SFSTGMPLDMVTIDIKSCADNIGQITGESIDEAVMHDIFSRFCIGK 460


>gi|229159044|ref|ZP_04287100.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 4342]
 gi|228624463|gb|EEK81234.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 4342]
          Length = 458

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 148/459 (32%), Positives = 251/459 (54%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +    I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYST--------YTEEYDHLIS 344
           ADL+L++    + + ++ E  F   +  DFI I  K+DL             EE   + +
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVIELAEENRVITT 359

Query: 345 SFTGE-GLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S   E G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIESGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|288554601|ref|YP_003426536.1| tRNA modification GTPase TrmE [Bacillus pseudofirmus OF4]
 gi|288545761|gb|ADC49644.1| tRNA modification GTPase TrmE [Bacillus pseudofirmus OF4]
          Length = 456

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 153/462 (33%), Positives = 253/462 (54%), Gaps = 32/462 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRI- 60
           E +TI A+ST     AI I+RLSG     + + I K  KP    AS    +G  +DG   
Sbjct: 2   EFDTIAAISTALGEGAIGIVRLSGDEAVAIADKIYKGAKPLSEAASHTIVYGYIMDGETR 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ +  +P +FT ED  E + HGG+  VN +L+ LA     RLA PGEF++RAF N
Sbjct: 62  VEEAMVSIMRAPRTFTREDVVEINCHGGLVSVNKVLK-LALKHGARLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE + DLI ++T+    +++  + G LS         L    + +E ++D+ E
Sbjct: 121 GRIDLSQAEGVMDLIRAKTDKAMNVALGQVEGRLSKKIAILRQALLETVASVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDIL-----FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
                 + ++ V +D+L     F++ +I   +     G+I+R G   VI+G  N GKSSL
Sbjct: 181 ------YDAEVVTHDLLIEKANFVEREIDKLLGTANQGKILREGLSTVIVGRPNVGKSSL 234

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N+L  ++ AIVTDI GTTRDV+   +++ G  +++ DTAGIRET+D+VE+ G++R+   
Sbjct: 235 LNSLVHEEKAIVTDIAGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDMVERIGVERSRQV 294

Query: 296 VENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDL--------YSTYTEEYDH 341
           ++ A+LILL+    +E++S+ E  F   K+++ I I  K+D+             E    
Sbjct: 295 LKEAELILLVLNYGEELSSEDEALFEAVKHLNVIVIVNKTDVEQKIDLNRVRELAEGRPV 354

Query: 342 LISSFT-GEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398
           + +S    EG++EL + I S+      +    +  S+ RH+  L Q    ++ A S  + 
Sbjct: 355 VTTSLIKDEGVDELESAIASLFFEGDLESGDATYVSNSRHIALLEQAKSTIQDAKSAIDM 414

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+I G    E L+D +FS+FC+GK
Sbjct: 415 GVPIDLVQIDITRTRELLGEIIGDSVHESLIDQLFSQFCLGK 456


>gi|67540704|ref|XP_664126.1| hypothetical protein AN6522.2 [Aspergillus nidulans FGSC A4]
 gi|40738672|gb|EAA57862.1| hypothetical protein AN6522.2 [Aspergillus nidulans FGSC A4]
 gi|259480093|tpe|CBF70910.1| TPA: mitochondrial GTPase (Mss1), putative (AFU_orthologue;
           AFUA_6G04950) [Aspergillus nidulans FGSC A4]
          Length = 614

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 120/311 (38%), Positives = 183/311 (58%), Gaps = 28/311 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-------DG 58
           TI+A+ST    +AI+++R+SGP+C  + + +C K   P PR A++R  +           
Sbjct: 62  TIYALSTAPGRAAIAVVRVSGPACVSIYQALCPKAPLPRPRVAAVRTIYDPASDEPCGQA 121

Query: 59  RILDKGLLIVF-PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP----NLRLANPGEF 113
            ILD G L+++ P P++ TGED  EFH+HGG A+V  +L  ++K      ++R A PGEF
Sbjct: 122 DILDAGALVLYMPGPKTATGEDVLEFHLHGGPAIVKSVLSAISKTSGKEHSVRYAEPGEF 181

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N +++L + E+L D ++++TE QRRL++ G S  LS  Y +W  +L + R  +E
Sbjct: 182 TRRAFMNDRLELPQIEALGDTLAADTEQQRRLAVRGASDALSKRYEKWRQQLLYARGELE 241

Query: 174 ADLDFSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           A +DFSE++     S   VL+    +  L   I+ HI     GE++R+G K+ +LG  NA
Sbjct: 242 ALIDFSEDQYFDESSDDLVLSVSTQVRALSRQIALHIQNASKGELMRSGIKVALLGAPNA 301

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD-------- 282
           GKSSL N +  ++ AIV+   GTTRD++ + +DL G+  K+ D AGIR            
Sbjct: 302 GKSSLLNRIVGREAAIVSTEEGTTRDIVDVGIDLGGWYCKLGDMAGIRSEPSSNSPGGAS 361

Query: 283 ----IVEKEGI 289
                VEKEGI
Sbjct: 362 LVIGSVEKEGI 372



 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 397 EKDCGLDIIAENLRLASVSLGKITG---CVDVEQLLDIIFSKFCIGK 440
           E +  + + AE+LR A+ +L  ITG     DVE +L ++F KFC+GK
Sbjct: 568 ESEVDIVVAAEHLRYAADALASITGKGESGDVEDVLGVVFEKFCVGK 614


>gi|307298711|ref|ZP_07578514.1| tRNA modification GTPase TrmE [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915876|gb|EFN46260.1| tRNA modification GTPase TrmE [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 439

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 142/440 (32%), Positives = 246/440 (55%), Gaps = 13/440 (2%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCF-QVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           I A+ST    SA ++IR SG     ++   +   K   PR A L  F   D R +D+ ++
Sbjct: 6   ICALSTPRGLSATAVIRCSGKGIVSKISHLLPDLKTLKPRHAHLTSFMEGD-RYIDEVVV 64

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F  P S+TGED  E   HG   ++   LE L ++   R+A PGEF++RA  NGK DL+
Sbjct: 65  VFFQGPASYTGEDLVELSFHGNPLIIENALESLFRV-GFRMALPGEFTKRAVLNGKFDLV 123

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE++  LI+S+TE     +++   G LS     + +K+  + + +E +L++ +E +  +
Sbjct: 124 KAEAINALIASKTEKSLEAAIKSFRGSLSEEVASFREKMVRLLASVEVELNYPDEIET-D 182

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
           +SS  + ++++ LK ++   I + + G +I  G K  I+G +N GKS+L NAL K+D AI
Sbjct: 183 YSS--LYDELVSLKKEMCEFIEKSRNGVVISQGIKTAIVGETNVGKSTLLNALLKRDRAI 240

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           V++IPGTTRD +  DL++ G L ++ DTAGIR+ ++ +E  GI+R+   +E A+L++LL+
Sbjct: 241 VSEIPGTTRDTIEEDLNIGGVLFRVIDTAGIRQAENEIEVLGIERSLKAIEEAELVILLR 300

Query: 307 EINSKKEISFPKNI-----DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
           + ++ +     + +       I    KSD+       +D +IS+ TGEGL++L  K+   
Sbjct: 301 DPHNPESKDLEEELRNKGKRLIVAANKSDIRKVEQHHFDVVISARTGEGLKDL-EKLMLK 359

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKIT 420
            + +   +   +    R    L   V Y+  +    E +  +D+++  +  A+ SL ++ 
Sbjct: 360 RTEEITSIGDEVIISARQKQKLLDAVDYIARSIEAIEGNITVDVLSTMIEQAARSLDELL 419

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G    E +L+ IFS FC+GK
Sbjct: 420 GTHITEDVLERIFSDFCVGK 439


>gi|224023939|ref|ZP_03642305.1| hypothetical protein BACCOPRO_00656 [Bacteroides coprophilus DSM
           18228]
 gi|224017161|gb|EEF75173.1| hypothetical protein BACCOPRO_00656 [Bacteroides coprophilus DSM
           18228]
          Length = 476

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 153/479 (31%), Positives = 250/479 (52%), Gaps = 52/479 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG----LDG 58
           ++TI A++T A   AI  IR+SGP    + + I K    KP   +A   + FG     +G
Sbjct: 7   EDTICAIAT-AQGGAIGTIRVSGPEAITLTDRIFKPVSGKPLAERAPYTFTFGHILTPEG 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ L+ +F +P S+TG+DS E   HG   ++  +++ L +    R A PGE+++RAF
Sbjct: 66  EIIDEVLVSLFRAPHSYTGQDSTEISCHGSSYILQQVMQLLIRQ-GCRAAGPGEYTQRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    R++M  M G  S       DKL H+ S +E +LDF
Sbjct: 125 LNGKMDLSQAEAVADLIASTSAATHRMAMNQMRGGFSRELAVLRDKLLHLTSLMELELDF 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSH-ISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           S+ E+++ F+ +  L  I      +  H +    +G  ++NG  + I+G +NAGKS+L N
Sbjct: 185 SDHEELE-FADRSELEAIARQIEQVIHHLVDTFSVGNALKNGVPVAIVGETNAGKSTLLN 243

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  ++ AIV+DI GTTRDV+   ++L G   +  DTAGIRET D +E  GI+R+F +++
Sbjct: 244 ALLNEERAIVSDIHGTTRDVIEDTMNLGGITFRFIDTAGIRETTDTIESLGIERSFQKLD 303

Query: 298 NADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342
            AD++L + +    +E         +   +    + +  K DL S      D        
Sbjct: 304 QADIVLWIIDATCAEEQYHQLADKILPRCEGKHLVIVLNKVDLLSPADSSADEQLARLKT 363

Query: 343 -------------ISSFTGEGLEELINKIKSILSNKFKKLP-----FSIPSHKRHLYHLS 384
                        +S+   EGL +L  ++       F  LP       + S+ RH   LS
Sbjct: 364 TLPDLPEDACVLSLSAKQKEGLSQLQKQLVD-----FTALPDLSQNDVVVSNIRHYEALS 418

Query: 385 QTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           + +  +      L  +  G D+++++LR     LG+I  G ++ +++L  IF  FC+GK
Sbjct: 419 RALEAIHRVQDGLAMQLSG-DLVSQDLRECLYHLGEIVGGTIETDEVLGNIFKHFCVGK 476


>gi|332361128|gb|EGJ38932.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK1056]
          Length = 479

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 258/459 (56%), Gaps = 22/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 24  ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSEVESHTLNYGHIVDPQ 83

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 84  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 142

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 143 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 202

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 203 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 262

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 263 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 322

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           + ADL+LL+   +       ++ +   ++ + I +  K+DL      E D L      IS
Sbjct: 323 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDVIKIS 380

Query: 345 SFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
               + ++++  +I      K    +   +  S+ RH+  + + +  L+  +   E    
Sbjct: 381 VLHNQNIDKIEERINQFFFEKAGIIEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 440

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 441 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 479


>gi|94994338|ref|YP_602436.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10750]
 gi|166234825|sp|Q1J6U1|MNME_STRPF RecName: Full=tRNA modification GTPase mnmE
 gi|94547846|gb|ABF37892.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS10750]
          Length = 458

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 146/464 (31%), Positives = 261/464 (56%), Gaps = 32/464 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G  +D 
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  NTGTIVDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E + L +     
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKI--ELEQLPADLI-- 356

Query: 350 GLEELINKIKSILSNKFKKLPF----------SIPSHKRHLYHLSQTVRYLEMASLNEK- 398
            +  L N+  +++ ++  +L F          +  S+ RH+  + + V+ LE  ++N+  
Sbjct: 357 SISVLTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGL 414

Query: 399 --DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 415 ALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|87300820|ref|ZP_01083662.1| tRNA modification GTPase [Synechococcus sp. WH 5701]
 gi|87284691|gb|EAQ76643.1| tRNA modification GTPase [Synechococcus sp. WH 5701]
          Length = 394

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 143/398 (35%), Positives = 230/398 (57%), Gaps = 25/398 (6%)

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  LD+ LL++  +P SFT ED  E H HGG+  V  +LE L  +   R A PGEFS+RA
Sbjct: 7   GERLDEALLLLMKAPRSFTREDVVELHCHGGLIAVARVLE-LVLLSGARRARPGEFSQRA 65

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL----SSLYGQWIDKLTHIRSFIE 173
           F NG++DL  AE+++DLI++ +    +L++ G+ G L    S+L  + +D+L  +    E
Sbjct: 66  FLNGRLDLTRAEAISDLITARSRRAAQLALAGLDGGLQRRISALRERLLDQLAEL----E 121

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF  EED+     + ++ ++  ++ ++   +++  +G+++R G K+ I+G  N GKS
Sbjct: 122 ARVDF--EEDLPPLDPEALVAELEAVRLELQVLVAEASVGQLLREGLKVAIIGRPNVGKS 179

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NAL++++ AIVT++PGTTRD+L  +L L+G  + + DTAGIR TDD VE+ GI+R+ 
Sbjct: 180 SLLNALSRRERAIVTELPGTTRDLLESELVLQGVPLTLLDTAGIRPTDDPVERLGIERSR 239

Query: 294 LEVENADLILL-------LKEINSKKEISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISS 345
             +  AD +LL         + +++        +  + +G K+D  +     + D +IS+
Sbjct: 240 QALAAADAVLLLVDLAEGWTQADAELHAQVLAGVPSLVVGNKADRAAGAPPAQVDVVISA 299

Query: 346 FTGEGLEELINKIKSILSNKF-KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-- 402
            TG GLE L   + S   +   + L  ++   +R L   + T   L+  SL     GL  
Sbjct: 300 LTGSGLEALAEALLSRCGHSLGQGLEVALNVRQRDLAAAAAT--SLD-GSLEAAAAGLPW 356

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D    +LR A+ SLG+ITG    E +LD +FS+FCIGK
Sbjct: 357 DFWTIDLRQAARSLGEITGEEVNEAVLDRVFSRFCIGK 394


>gi|139473816|ref|YP_001128532.1| tRNA modification GTPase TrmE [Streptococcus pyogenes str.
           Manfredo]
 gi|166234826|sp|A2REM7|MNME_STRPG RecName: Full=tRNA modification GTPase mnmE
 gi|134272063|emb|CAM30302.1| tRNA modification GTPase TrmE [Streptococcus pyogenes str.
           Manfredo]
          Length = 458

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 146/460 (31%), Positives = 261/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G  +D 
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKS-LEQVASHTINYGHIIDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY---DHL-ISS 345
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E    D++ IS 
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360

Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK---DC 400
            T + +  + ++I  +  +     +   +  S+ RH+  + + V+ LE  ++N+      
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGLALGM 418

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|323449068|gb|EGB04959.1| hypothetical protein AURANDRAFT_59431 [Aureococcus anophagefferens]
          Length = 486

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 158/472 (33%), Positives = 252/472 (53%), Gaps = 51/472 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFFGLDGRILDK 63
           +TI+A+S+G   + ++++R+SGPS       +   K P P  R ASLR        +LD+
Sbjct: 29  DTIYALSSGRGVAGVAVVRVSGPSASDALAALTPGK-PLPAHRVASLRTLRDASD-VLDE 86

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L++ F +P SFTGED  E H HGG A V+G+LE L  +P LR A+ GEF+RRAF  GK+
Sbjct: 87  ALVLRFEAPRSFTGEDVVELHCHGGEATVDGVLEALDALPKLRAADRGEFTRRAFAAGKL 146

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE--E 181
            L E E LADL++++T  QRR ++  M G +   Y +W  +L  +R+  E  +DF +  E
Sbjct: 147 GLTEVEGLADLLAAKTAPQRRQALAQMGGSMERTYARWRGELASLRASAEVLVDFGDDVE 206

Query: 182 EDVQNFSS--KEVLN-DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            DV + S   +  L+  +  LK ++ + ++    GE  R+G ++          SSL NA
Sbjct: 207 GDVADQSDDIRAALDASVRSLKTELDAALTDAPRGEATRDGVRV----------SSLLNA 256

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETD--DIVEKEGIKRTF 293
           +A +D AIV+   GTTRDVL I L L G   ++ DTAG+R   E D  D VE EG++R  
Sbjct: 257 VAARDAAIVSQAAGTTRDVLEIGLSLGGLPARLFDTAGLRVDGEEDSLDAVEVEGMRRAA 316

Query: 294 LEVENADLILLL---------------KEINS--KKEISFPKNIDFIFIGTKSDLY---- 332
              E A +++ +               + I    +++   P   + + +  K+DL     
Sbjct: 317 RAAEAAHVVVFVLDAADDDASAVADAFRAIAPVWRRDDGAPAP-ELVVVTNKADLAEGLG 375

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFK--KLPFSIPS--HKRHLYHLSQTVR 388
           +          S+   +G   L++ ++  + + F+  +  +  P+    RH  H++  V 
Sbjct: 376 AVVAAAATVRASATAADGAAALVDDLERRVVDAFRSSRDDYEAPAITRARHRKHVASCVA 435

Query: 389 YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L+ A L++ D   +++AE LR A+  LG + G VD EQ+LD++F+ FCIGK
Sbjct: 436 CLD-AVLSDPDLMPELVAEELRAATSDLGAVVGAVDTEQVLDVLFNDFCIGK 486


>gi|119196533|ref|XP_001248870.1| hypothetical protein CIMG_02641 [Coccidioides immitis RS]
          Length = 628

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 128/332 (38%), Positives = 188/332 (56%), Gaps = 36/332 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-----DGRI 60
           TI+A+ST    +AI+I+R+SGP+C QV + +C     P PR A+LR             +
Sbjct: 60  TIYALSTAPGRAAIAIVRVSGPACVQVYKGLCPGSPLPKPRYATLRTLCDPTQSPSSNAV 119

Query: 61  LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM----------PNLRLAN 109
           LD G L++ FP+P++ TGED  E H+HG  AV+  +L  + K             +R A 
Sbjct: 120 LDSGALVLYFPAPKTVTGEDVLELHIHGSPAVIKAVLNAIPKCLENKIETGLESCIRYAE 179

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G S  LS+ Y  W  +L + R
Sbjct: 180 PGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENWRQQLLYAR 239

Query: 170 SFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
             +EA +DFSE+    E V +F    V   +  L N I  HI     GE++R+G KI +L
Sbjct: 240 GELEALIDFSEDQHFDESVDDFMIS-VTGQVRKLLNQIDVHIENASKGELLRSGIKIALL 298

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR------- 278
           G  NAGKSSL N +  ++ AIV+   GTTRD++ + +DL G+L K  D AG+R       
Sbjct: 299 GAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSAPPKLI 358

Query: 279 --ETDDI-----VEKEGIKRTFLEVENADLIL 303
             E  D      VE+EGI+R       +DL++
Sbjct: 359 GEERKDSTVIGEVEREGIRRAKARALESDLVI 390


>gi|19746040|ref|NP_607176.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS8232]
 gi|94990416|ref|YP_598516.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10270]
 gi|209559376|ref|YP_002285848.1| tRNA modification GTPase TrmE [Streptococcus pyogenes NZ131]
 gi|25009494|sp|Q8P161|MNME_STRP8 RecName: Full=tRNA modification GTPase mnmE
 gi|166234824|sp|Q1JH22|MNME_STRPD RecName: Full=tRNA modification GTPase mnmE
 gi|19748208|gb|AAL97675.1| putative thiophene degradation protein F [Streptococcus pyogenes
           MGAS8232]
 gi|94543924|gb|ABF33972.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS10270]
 gi|209540577|gb|ACI61153.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Streptococcus
           pyogenes NZ131]
 gi|323127423|gb|ADX24720.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 458

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 146/460 (31%), Positives = 261/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G  +D 
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY---DHL-ISS 345
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E    D++ IS 
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360

Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK---DC 400
            T + +  + ++I  +  +     +   +  S+ RH+  + + V+ LE  ++N+      
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGLALGM 418

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|314940137|ref|ZP_07847317.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a04]
 gi|314943032|ref|ZP_07849836.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133C]
 gi|314948150|ref|ZP_07851546.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0082]
 gi|314953436|ref|ZP_07856354.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133A]
 gi|314993825|ref|ZP_07859161.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133B]
 gi|314998150|ref|ZP_07863032.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a01]
 gi|313587862|gb|EFR66707.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a01]
 gi|313591716|gb|EFR70561.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133B]
 gi|313594539|gb|EFR73384.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133A]
 gi|313598232|gb|EFR77077.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133C]
 gi|313640642|gb|EFS05222.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a04]
 gi|313645404|gb|EFS09984.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0082]
          Length = 485

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 265/469 (56%), Gaps = 42/469 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLD-- 57
           E +TI A+ST     AISI+RLSG    Q+ + +     K+    P   ++ Y   +D  
Sbjct: 27  EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSH-TIHYGHIVDPK 85

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++R
Sbjct: 86  SNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 144

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++
Sbjct: 145 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 204

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL 
Sbjct: 205 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 264

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +
Sbjct: 265 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 324

Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-YDHL------- 342
             ADLILL+    + + ++ E  +     +  I +  K+DL +   +E    L       
Sbjct: 325 AEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEPVF 384

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398
            IS    +GL    ++++S +S+ F    FS  + +R   ++S T  +  LE ASL+ + 
Sbjct: 385 SISVAKNDGL----DRLESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 436

Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                D G+  D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 437 VIAGIDSGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 485


>gi|228470917|ref|ZP_04055762.1| tRNA modification GTPase TrmE [Porphyromonas uenonis 60-3]
 gi|228307314|gb|EEK16328.1| tRNA modification GTPase TrmE [Porphyromonas uenonis 60-3]
          Length = 470

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 158/474 (33%), Positives = 250/474 (52%), Gaps = 49/474 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A +T AL   +++IR+SG    Q+ E +  K+   PR+A+      +DG+++D  +
Sbjct: 7   ETICAPAT-ALGGGLAVIRISGSLVPQIAETLLGKRLA-PREAT-TAGLRIDGQLIDLVV 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
              F +P S+TGE+  E   H    +V  ILE +A     R+A+PGEF+RRA  +GK+DL
Sbjct: 64  ATYFAAPHSYTGEEVVELSCHASPFIVRSILEWIAHQKGCRMADPGEFTRRALAHGKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE++ADLI++ T  Q +++ME  +G LS L  +    L      +E +LDFS EEDV 
Sbjct: 124 AEAEAVADLIAATTATQHKMAMEQHTGRLSHLLNELRATLLRFAGLLELELDFS-EEDVA 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            F+ +  L + L         ++Q    G+ ++ G    I+G  N GKSSL NAL + + 
Sbjct: 183 -FADRTTLAETLATIQHQLRLLTQSFSTGQELQQGIPTAIIGAPNVGKSSLLNALLQHER 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+DIPGTTRD +   L + G L ++ DTAG+R+T D+VE+ GI+R++ ++ +A LIL 
Sbjct: 242 AIVSDIPGTTRDTVEGRLTIRGTLFRLIDTAGLRQTTDLVEQLGIERSYQQISSARLILW 301

Query: 305 L--------KEINSKKEISFP---KNIDFIFIGTKSDLYS--TYTEEYDHL--------- 342
           +         E+ ++     P    +   I +  K DL +    T+   H          
Sbjct: 302 VIAPPLPTWDELETQLGELLPLTSPDSTLILLLNKRDLLTEREVTDWLSHCSDQLQRITD 361

Query: 343 ---------ISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                    IS+   +G+E L    +    ++ SN+   + +++    RH   L++    
Sbjct: 362 KRHTTPPLAISARAAQGIEALEELMVTNTHTLHSNEETVMLYNL----RHYEALTKASHA 417

Query: 390 LEMASLNEKDCGL--DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
           LE+ S    + GL  D+I   LR A   +G +TG  +  +++L  IFS FCIGK
Sbjct: 418 LELVSEGLHN-GLTSDLITPYLREAIEEIGLVTGASITSDEVLGYIFSHFCIGK 470


>gi|229176160|ref|ZP_04303652.1| tRNA modification GTPase mnmE [Bacillus cereus MM3]
 gi|228607319|gb|EEK64649.1| tRNA modification GTPase mnmE [Bacillus cereus MM3]
          Length = 458

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 145/461 (31%), Positives = 251/461 (54%), Gaps = 28/461 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +    I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSILRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRTEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYSTYTEEY-------DHLI 343
           ADL+L++  +N  + ++          +  DFI I  K+DL      E        + +I
Sbjct: 300 ADLVLVV--VNYSEALTHEDEDLFRAVQGKDFIVIVNKTDLSQVIDMERVTELAAGNRII 357

Query: 344 SS--FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKD 399
           ++     +G++EL   I  +           +  S+ RH+  L+Q  + + +     E  
Sbjct: 358 TTSLIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENG 417

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 418 VPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|324991080|gb|EGC23014.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK353]
          Length = 457

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 147/461 (31%), Positives = 260/461 (56%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342
           + ADL+LL+  +N+ + ++          ++ + I +  K+DL      E D L      
Sbjct: 301 QEADLVLLV--LNASESLTEQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPADAIK 356

Query: 343 ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
           IS    + ++++  +I  +   +    +   +  S+ RH+  + + +  L+  +   E  
Sbjct: 357 ISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNTRHISLIEKALESLQAVNQGLEMG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 417 MPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|229153643|ref|ZP_04281819.1| tRNA modification GTPase mnmE [Bacillus cereus m1550]
 gi|228629829|gb|EEK86482.1| tRNA modification GTPase mnmE [Bacillus cereus m1550]
          Length = 458

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 253/459 (55%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +  + I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|78188083|ref|YP_378421.1| tRNA modification GTPase TrmE [Chlorobium chlorochromatii CaD3]
 gi|123579063|sp|Q3ANQ3|MNME_CHLCH RecName: Full=tRNA modification GTPase mnmE
 gi|78170282|gb|ABB27378.1| tRNA modification GTPase trmE [Chlorobium chlorochromatii CaD3]
          Length = 473

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 161/473 (34%), Positives = 262/473 (55%), Gaps = 37/473 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYF---FGL 56
           ++ + E I A++T     A++++R+SG   F +   +  K+  P    AS + F   FG 
Sbjct: 5   LSFQDEPIVALATPLGVGALAVVRMSGQGVFDIARKVFHKQGAPDFHLASSKGFQAHFGT 64

Query: 57  --DGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
             D + ++D+ + +VF SP SFT ED  EF  HGG  VV  +L+ L      RLA PGEF
Sbjct: 65  IHDAQGVVDEVIALVFRSPRSFTMEDMVEFSCHGGPVVVQHLLKALID-AGCRLAEPGEF 123

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF NG+IDLL+AE++ ++I + +E   R ++  M G LS    +  +KL H  + +E
Sbjct: 124 TRRAFLNGRIDLLQAEAIGEMIHARSESAFRTAVTQMQGRLSRQLEEMREKLLHSCALLE 183

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
            +LDFSEE DV+  + +E+  D+  L+ +I+  +   + G +++ G   V++G  NAGKS
Sbjct: 184 LELDFSEE-DVEFQNREELREDVQRLQGEINRLLDSYQHGRLLKEGVATVLVGSPNAGKS 242

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           +L NAL  ++ +IV+  PGTTRD +   L L   L ++ DTAG+RE ++ VE EGI+R++
Sbjct: 243 TLLNALLGEERSIVSHQPGTTRDYIEEPLLLGSTLFRLIDTAGLREGEEEVEHEGIRRSY 302

Query: 294 LEVENADLILL------------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
            ++  AD++L             L +I S  E + P N+  + +  K D  +  TE    
Sbjct: 303 RKIAEADVVLYLLDVSHPDYCNELSDITSLLEQASP-NVQLLLVANKCDAITNPTERLAQ 361

Query: 342 L-----------ISSFTGEGLEELINKIKSILS--NKFKKLPFSIPSHKRHLYHLSQTVR 388
           L           I++  G+GLE L  ++ ++++  +K  +    I S  RH   L +   
Sbjct: 362 LQAAMPQATVCGIAAKEGDGLEALKQQMSNMVAGLDKLHEASVLITS-MRHYEALRRASD 420

Query: 389 YLEM-ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LE  A L  +    +++A  LR A  ++G+ITG V  +++L +IF +FCIGK
Sbjct: 421 ALENGACLVAEHAETELVAFELRSALEAVGEITGKVVNDEILSLIFERFCIGK 473


>gi|69247494|ref|ZP_00604364.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Enterococcus faecium DO]
 gi|68194819|gb|EAN09294.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Enterococcus faecium DO]
          Length = 494

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 265/469 (56%), Gaps = 42/469 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLD-- 57
           E +TI A+ST     AISI+RLSG    Q+ + +     K+    P   ++ Y   +D  
Sbjct: 36  EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSH-TIHYGHIVDPK 94

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++R
Sbjct: 95  SNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 153

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++
Sbjct: 154 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 213

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL 
Sbjct: 214 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 273

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +
Sbjct: 274 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 333

Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-YDHL------- 342
             ADLILL+    + + ++ E  +     +  I +  K+DL +   +E    L       
Sbjct: 334 AEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEPVF 393

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398
            IS    +GL    ++++S +S+ F    FS  + +R   ++S T  +  LE ASL+ + 
Sbjct: 394 SISVAKNDGL----DRLESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 445

Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                D G+  D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 446 VIAGIDSGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 494


>gi|124024442|ref|YP_001018749.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9303]
 gi|166234806|sp|A2CDC4|MNME_PROM3 RecName: Full=tRNA modification GTPase mnmE
 gi|123964728|gb|ABM79484.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus str. MIT 9303]
          Length = 465

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 150/454 (33%), Positives = 252/454 (55%), Gaps = 45/454 (9%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFG--LD--GR-ILDKGLLIVFP 70
            I+++RLSGP+     E + +     P +    S R  +G  +D  G+  +D+ L+++  
Sbjct: 25  GIAVVRLSGPAA----EVVGRSVVSIPGQQLWVSHRVLYGHVMDESGKERIDEVLVLLMK 80

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
            P SFTGED  E H HGG+  V  +LE +   P++R A PGEFS+RA  NG++DL +AE+
Sbjct: 81  GPRSFTGEDVVEIHCHGGLMAVQRVLERVLAQPHVRRALPGEFSQRAVLNGRLDLTQAEA 140

Query: 131 LADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +++L+++ +    +L+M G+ G     ++SL  + +D+L    S +EA +DF  EED+  
Sbjct: 141 ISELVAARSRRAAQLAMTGVDGGIQRRITSLRERLLDQL----SELEARVDF--EEDLPP 194

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + E+L ++  ++ ++   +   K G+++R G ++ ++G  N GKSSL N L++++ AI
Sbjct: 195 LDAAELLLELQCVRRELEQLVEDAKRGDVLRQGLQVALVGRPNVGKSSLLNRLSRRERAI 254

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA------- 299
           VTD+PGTTRDVL  ++ LEG  + + DTAGIR T D +E+ GI R+   +  A       
Sbjct: 255 VTDLPGTTRDVLESEIVLEGVPITLVDTAGIRATKDALEQLGIDRSHQALAAADVAVLVF 314

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLY-----STYTEEYDH-----LISSFTGE 349
           DL L     ++      P ++  + +G K+DL      ++ + E D      ++S+ TG+
Sbjct: 315 DLSLGWTADDAALLAQIPDDLPRLLVGNKADLQPASMTASLSNEVDGKTVDVMLSALTGQ 374

Query: 350 GLEELINKI-KSILSNKFKKLPFSIPSHKRH--LYHLSQTVRYLEMASLNEKDCGLDIIA 406
           G E LI  + K+  +++ + L  ++   ++           R  E A+   +    D   
Sbjct: 375 GEEALIEAVLKTCGASEAQGLVVALNQRQQDLAATAAIALARTQEAAA---QKLPWDFWT 431

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LR A  SLG+ITG    E +LD IFS+FCIGK
Sbjct: 432 IDLRQAISSLGEITGEEITEAVLDRIFSRFCIGK 465


>gi|320546578|ref|ZP_08040893.1| tRNA modification GTPase TrmE [Streptococcus equinus ATCC 9812]
 gi|320448963|gb|EFW89691.1| tRNA modification GTPase TrmE [Streptococcus equinus ATCC 9812]
          Length = 457

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 155/468 (33%), Positives = 262/468 (55%), Gaps = 40/468 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG     + + + + K      + ++ Y   +D  
Sbjct: 2   ITKEFDTIAAISTPLGEGAIGIVRLSGTDALDIAKKVYRGKDLSKVDSHTINYGHIVDPD 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++ V  SP++FT ED  E + HGG+AV N IL+ L      RLA PGEF++R
Sbjct: 62  NDEILDEVMVSVMLSPKTFTREDVIEINTHGGVAVTNEILQ-LVLRHGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSKLINDTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++  +       ++ + + +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTALIHEKTQEFQSLLENLLRTARRGKILREGLSTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKAL 300

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342
           E ADL+LL+  +NS + ++          K+ + I +  K+DL      E D L      
Sbjct: 301 EEADLVLLV--LNSSEPLTDQDRALLELSKDSNRIILLNKTDLPEKI--EADQLPDDVIR 356

Query: 343 ISSFTGEG---LEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
           IS    E    +EE IN++      I+      L     S+ RH+  + + V+ L+  S+
Sbjct: 357 ISVLKNENINLIEERINQLFFDNAGIVEKDATYL-----SNARHISLIEKAVQSLQ--SV 409

Query: 396 NEK-DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           NE  + G+  D++  +L      LG+ITG    ++L++ +F++FC+GK
Sbjct: 410 NEGLEMGMPVDLLQIDLTRCWEILGEITGDAAPDELINQLFTQFCLGK 457


>gi|258517429|ref|YP_003193651.1| tRNA modification GTPase TrmE [Desulfotomaculum acetoxidans DSM
           771]
 gi|257781134|gb|ACV65028.1| tRNA modification GTPase TrmE [Desulfotomaculum acetoxidans DSM
           771]
          Length = 461

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 157/470 (33%), Positives = 256/470 (54%), Gaps = 45/470 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LD 57
           ++TI A++T      I I+R+SG     + E I +  K+K + +  +    +G      +
Sbjct: 3   EDTIAAIATPLGEGGIGIVRISGTESIIIAEKIFRSLKEKDWVKNLNYGLIYGYIVDPFN 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ LL V  +P S+T E+  E + HGG+  +    E L      R A PGEF++RA
Sbjct: 63  NSIVDEVLLSVMRAPNSYTRENIVEINCHGGLVPLRKTFE-LVLNSGARTAEPGEFTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AES+ D+I ++T     L+++ + G+LS       DKL ++ + +EA +D
Sbjct: 122 FLNGRLDLAQAESVIDVIRAKTSDSLSLAVKQLEGKLSEKISNMQDKLLYLLAHVEAVID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EE D++  + +++  +I  +  +I+  I   + G+I R G  +VI G  N GKSSL N
Sbjct: 182 FPEE-DIEASTIEKIKAEIKDIIKEINKWIELARAGKIYREGLAVVIAGKPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL K+  AIVT+IPGTTRD +   ++++G  VKI+DTAG+RET D VEK G++ +  ++ 
Sbjct: 241 ALLKEKRAIVTEIPGTTRDAIEEYINIKGIPVKITDTAGLRETGDTVEKIGVQISKEKIM 300

Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
            AD+IL               +L E+ ++  I     ID   +G+  ++ +  + +Y++L
Sbjct: 301 GADIILYMLDVKNGFTDVDCYVLDEVINRNLIVIINKID---VGSGIEIINNISNKYENL 357

Query: 343 ----ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRH-------LYHLSQTVRYL 390
               IS+    GL+ L + I S + S         I S+ RH       +Y+L   +  +
Sbjct: 358 EIVQISALKDIGLDLLEDAIASFVFSGNAAASNEIIISNTRHKSVLKRVVYNLQDVIEGI 417

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E A        LDI++ +LR A  +LG+ITG    E ++D IF +FCIGK
Sbjct: 418 ENA------MPLDIVSIDLRNAWETLGEITGSSVTEDIIDKIFKEFCIGK 461


>gi|227518132|ref|ZP_03948181.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0104]
 gi|227074400|gb|EEI12363.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0104]
          Length = 465

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 149/463 (32%), Positives = 257/463 (55%), Gaps = 30/463 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LD 57
           E +TI A+ST     AISI+RLSG     +   + +   K   +  +    +G      +
Sbjct: 7   EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 66

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ +L V  +P++FT ED  E + HGGI VVN +L+ L +    R+A PGEF++RA
Sbjct: 67  DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMAEPGEFTKRA 125

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E ++D
Sbjct: 126 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNID 185

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 186 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLN 245

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   + 
Sbjct: 246 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 305

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342
           ++DLILL+  +N  +E++          K +  + +  K DL +     E   L      
Sbjct: 306 DSDLILLV--LNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363

Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             +S  +  GL++L  KI  +    +  +   +  S+ RH+  L Q    L+   +N  +
Sbjct: 364 LSVSVLSNTGLDQLETKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEV-INGIE 422

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|254520702|ref|ZP_05132758.1| tRNA modification GTPase TrmE [Clostridium sp. 7_2_43FAA]
 gi|226914451|gb|EEH99652.1| tRNA modification GTPase TrmE [Clostridium sp. 7_2_43FAA]
          Length = 459

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 160/461 (34%), Positives = 258/461 (55%), Gaps = 26/461 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD- 57
            E +TI A+ST      I+IIR+SG    ++   I + K        +  ++RY   +D 
Sbjct: 2   KEFDTICAISTAIGEGGIAIIRVSGDEALEIVSKIFRAKSGKDIRDMKTYTMRYGHIVDI 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ++D+ ++     P+SFT ED+ E + HGG+   N +LE + K    R+A PGEF++
Sbjct: 62  DKEDLIDEVIISYMKGPKSFTAEDTVEINCHGGVTSTNKVLEMVIK-AGARIAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI+++TE+  + ++   +G LS    +  + L ++ + IE  
Sbjct: 121 RAFLNGRIDLSQAEAVMDLITAKTELAMKSALMQSTGSLSKKINKLREYLLNVLALIEYA 180

Query: 176 LDFSEE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +DF+E+ E+V       V + +    +D+S  +     G+IIR+G  + I+G  N GKSS
Sbjct: 181 VDFTEDDEEVDPTIPLRVKDSLEKACDDMSKLLKGADEGKIIRDGLSLAIVGKPNVGKSS 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L K+  AIVTDI GTTRDV+   ++L+G  VKI DTAGIRET+DIVEK G++++  
Sbjct: 241 LLNVLLKEKRAIVTDIAGTTRDVIEEYINLDGIPVKIIDTAGIRETEDIVEKIGVEKSKE 300

Query: 295 EVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS----TYTEEYDHL 342
           ++  ADL+LL+  ++S +E        I   KN + I +  K DL +    +    ++++
Sbjct: 301 KINEADLVLLV--LDSSRELDKEDIEIIEAIKNKNSIVLLNKIDLENKLDKSLLNNFENI 358

Query: 343 ISSFTGE--GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
           I     E  G++ L N+IK++  N        I S+ RH   L +     + A +  K+ 
Sbjct: 359 IKISAKEDVGIDGLKNEIKNMFFNGKIDSESLIVSNSRHKQALIRAKENCDDALIRVKNN 418

Query: 401 G-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LD+I+  +  A  +LG+ITG    E L++ IF +FC GK
Sbjct: 419 EFLDLISIYVTAALKALGEITGSELEEDLVNKIFKEFCCGK 459


>gi|218900625|ref|YP_002449036.1| tRNA modification GTPase TrmE [Bacillus cereus G9842]
 gi|228905428|ref|ZP_04069383.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 4222]
 gi|228968636|ref|ZP_04129619.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218540589|gb|ACK92983.1| tRNA modification GTPase TrmE [Bacillus cereus G9842]
 gi|228791065|gb|EEM38683.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228854248|gb|EEM98951.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 4222]
          Length = 458

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 254/459 (55%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +  + I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+   ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFHAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGQTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|260662533|ref|ZP_05863428.1| tRNA modification GTPase TrmE [Lactobacillus fermentum 28-3-CHN]
 gi|260553224|gb|EEX26167.1| tRNA modification GTPase TrmE [Lactobacillus fermentum 28-3-CHN]
          Length = 462

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 256/468 (54%), Gaps = 37/468 (7%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD--- 57
           N E++TI A+ST      ISIIR+SG     V   I K K     K+ ++ Y   +D   
Sbjct: 3   NSEQDTIAAISTPVGEGGISIIRVSGDQALDVVSRIFKGKDLHQVKSHTINYGHIIDPAS 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  +D+ ++ V  +P+++T ED  E + HGG+   N  L+ L      RLA PGE+++RA
Sbjct: 63  GETVDEVMVSVMLAPKTYTKEDVVEINCHGGLLATNRALQ-LTLTNGARLAEPGEYTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+   ++++  + G+LS L       +  + + +E ++D
Sbjct: 122 FLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSRLIKALRQDILDVLAQVEVNID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E + V+  ++K +      ++  + + +   K G+++R+G    I+G  N GKSSL N
Sbjct: 182 YPEYDAVEEMTTKMLKEKASEVRQRLETLLQTAKEGKVLRDGLATAIIGRPNVGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  +D AIVT++ GTTRDV+   +++ G  +K+ DTAGIR TDD VEK G++R+   +E
Sbjct: 242 ALLHEDKAIVTEVAGTTRDVIEEYVNVAGVPLKLIDTAGIRHTDDTVEKIGVERSKQAIE 301

Query: 298 NADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYS-------TYTEEYDHL 342
            ADLILLL        +E  +  E +  K    IF   K+DL +       T     D +
Sbjct: 302 TADLILLLIDSSRLLTEEDRALIEATAQKPRMVIF--NKTDLPAQVDLAELTELVNGDPV 359

Query: 343 ISSFTGE--GLEELINKI------KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
           I +   E  G++EL   I      + I SN+   +     ++ RH+  L Q V  L  A 
Sbjct: 360 IQTSILEHAGMQELGQAIAHRFFNEGIESNRGAVMV----TNARHIGLLHQAVDSLN-AV 414

Query: 395 LNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L   + G+  D++  ++  A  +LG+ITG    ++LLD +FS+FC+GK
Sbjct: 415 LEGIEAGMPVDLVQIDMTDAWNTLGEITGQTYQDELLDQLFSQFCLGK 462


>gi|306827423|ref|ZP_07460709.1| tRNA modification GTPase TrmE [Streptococcus pyogenes ATCC 10782]
 gi|304430368|gb|EFM33391.1| tRNA modification GTPase TrmE [Streptococcus pyogenes ATCC 10782]
          Length = 458

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 145/460 (31%), Positives = 259/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIINP 61

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY---DHL-ISS 345
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E    D++ IS 
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360

Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK---DC 400
            T + +  + ++I  +  +     +   +  S+ RH+  + + V+ LE  ++N+      
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGLALGM 418

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|323351499|ref|ZP_08087153.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           VMC66]
 gi|322121985|gb|EFX93711.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           VMC66]
          Length = 457

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 151/463 (32%), Positives = 260/463 (56%), Gaps = 30/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEINSKK----------EISFPKNIDFIFIGTKSDLYSTYTEEYDHL---- 342
           + ADL+LL+  +N+ +          EIS   N   I +  K+DL      E D L    
Sbjct: 301 QEADLVLLV--LNASEPLTDQDRQLLEISQVSN--RIVLLNKTDLEEKI--ELDQLPTDV 354

Query: 343 --ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
             IS    + ++++  +I  +   +    +   +  S+ RH+  + + +  L+  +   E
Sbjct: 355 IKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLE 414

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 415 MGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|333031364|ref|ZP_08459425.1| tRNA modification GTPase mnmE [Bacteroides coprosuis DSM 18011]
 gi|332741961|gb|EGJ72443.1| tRNA modification GTPase mnmE [Bacteroides coprosuis DSM 18011]
          Length = 465

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 158/467 (33%), Positives = 251/467 (53%), Gaps = 36/467 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFG--LDGR 59
           ++TI A++T A   AI  IR+SG     + E I    KK K    + +    FG  +D  
Sbjct: 4   QDTICAIAT-AQGGAIGTIRVSGKDAITITEKIFRPFKKDKILHEQPAYTLTFGKIIDHE 62

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P SFTGE+S E   HG   ++  ++E L K    R A PGE+++RAF
Sbjct: 63  EVIDEVLISLFKAPHSFTGENSVEITCHGSTYILQKVMELLIK-NGCRTAQPGEYTQRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S    +  ++L HI S IE +LDF
Sbjct: 122 LNGKMDLSQAEAVADLIASTSAATHRLAMSQMRGGFSKELAELRNQLLHITSMIELELDF 181

Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F++++ L  +   ++  IS   +   +G  I+NG  + I+G +NAGKS+L N
Sbjct: 182 SEE-DVE-FANRDQLKALADKIEQVISKLTNSFSVGNAIKNGVPVAIIGETNAGKSTLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  +D AIV++I GTTRDV+   +++ G   +  DTAGIRET D +E  GI+RTF +++
Sbjct: 240 ALLNEDKAIVSNIHGTTRDVIEDTMNIGGITFRFIDTAGIRETHDTIESLGIERTFQKLD 299

Query: 298 NADLILLL-------KEINSKKEISFPK--NIDFIFIGTKSDLY---------STYTEEY 339
            A+++L +       ++I    E   P+  +   I +  KS+L          +     Y
Sbjct: 300 QAEIVLWVIDAPTATEQIQQLAEKIVPRAQSKQLILVFNKSELINESERKGLEALAQTHY 359

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPF-----SIPSHKRHLYHLSQTVRYLEMAS 394
             L S F     +E + +++ +L+N    LP       I ++ RH   L++ +  +    
Sbjct: 360 PSLTSIFISAKEKEGVEQLEKLLTNS-ANLPTVTQNDVIVTNMRHYEALTKALEAIHRVQ 418

Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              E     D +++++R     L  I G V  + +L  IF  FCIGK
Sbjct: 419 DGLEMQISGDFLSQDIRECIFHLNDIAGEVTNDMVLQNIFKNFCIGK 465


>gi|83591335|ref|YP_431344.1| tRNA modification GTPase TrmE [Moorella thermoacetica ATCC 39073]
 gi|123523726|sp|Q2RFI8|MNME_MOOTA RecName: Full=tRNA modification GTPase mnmE
 gi|83574249|gb|ABC20801.1| tRNA modification GTPase trmE [Moorella thermoacetica ATCC 39073]
          Length = 462

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 155/464 (33%), Positives = 244/464 (52%), Gaps = 34/464 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFGLD---G 58
           +TI A++T      ISIIRLSG     +   + K  K       R  +LR  F +D   G
Sbjct: 4   DTIAALATPPGEGGISIIRLSGSQAIAIVAKVFKPVKGPDLTTTRSHTLRLGFIIDPVSG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             LD+ L+ V  +P S+T ED  E + HGG    + +L+ L      RLA PGEF+RRAF
Sbjct: 64  ESLDEVLVSVMRAPHSYTAEDVVEINCHGGALATSRVLQ-LVLRTGARLAEPGEFTRRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ ++I + +      +++ + G LS   G+  ++LT I + +EA +DF
Sbjct: 123 LNGRLDLAQAEAVLEIIRARSSRGLTAALDHLRGNLSRKIGELNERLTGILAALEASMDF 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            EE         E L D+  +   +   ++  + G ++  G K+ I+G  N GKSSL NA
Sbjct: 183 PEE---VGEVDPENLADLRRILAGVDRLLATWEEGRLLTEGLKVAIVGRPNVGKSSLLNA 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIV++IPGTTRD +   L L G+  ++ DTAG+RET D +E  G+ R+   +  
Sbjct: 240 LLNQERAIVSNIPGTTRDTIEETLQLGGFTCRLIDTAGLRETADELESIGVARSKKAIAA 299

Query: 299 ADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYS-----------TYTEEYDH 341
           ADL+L++ ++ +      ++ +   ++   I IG K DL +           ++   Y  
Sbjct: 300 ADLVLVVVDLQTGIQDEDRRVLESVRDKVLIIIGNKLDLVAHDINKKLADLESFAGNYPR 359

Query: 342 L-ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEK 398
           + +S+  G+GL+EL  K++ I+           P  ++ RH   L     +L  A +   
Sbjct: 360 VAVSALKGKGLDELARKVQEIVLGGRALAGSDEPLITNARHRAALENCREHLASA-IKAW 418

Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + GL  D+IA +L  A+  LG+I G    E LLD IFS FCIGK
Sbjct: 419 EEGLPEDLIAIDLWSAADYLGEIIGTTAREDLLDRIFSDFCIGK 462


>gi|184156315|ref|YP_001844655.1| GTPase [Lactobacillus fermentum IFO 3956]
 gi|227514112|ref|ZP_03944161.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum
           ATCC 14931]
 gi|183227659|dbj|BAG28175.1| GTPase [Lactobacillus fermentum IFO 3956]
 gi|227087483|gb|EEI22795.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum
           ATCC 14931]
 gi|299783731|gb|ADJ41729.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum
           CECT 5716]
          Length = 462

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 256/468 (54%), Gaps = 37/468 (7%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD--- 57
           N E++TI A+ST      ISIIR+SG     V   I K K     K+ ++ Y   +D   
Sbjct: 3   NSEQDTIAAISTPVGEGGISIIRVSGDQALDVVSRIFKGKDLHQVKSHTINYGHIIDPAS 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  +D+ ++ V  +P+++T ED  E + HGG+   N  L+ L      RLA PGE+++RA
Sbjct: 63  GETVDEVMVSVMLAPKTYTKEDVVEINCHGGLLATNRALQ-LTLTNGARLAEPGEYTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+   ++++  + G+LS L       +  + + +E ++D
Sbjct: 122 FLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSRLIKALRQDILDVLAQVEVNID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E + V+  ++K +      ++  + + +   K G+++R+G    I+G  N GKSSL N
Sbjct: 182 YPEYDAVEEMTTKMLKEKASEVRQRLETLLQTAKEGKVLRDGLATAIIGRPNVGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  +D AIVT++ GTTRDV+   +++ G  +K+ DTAGIR TDD VEK G++R+   +E
Sbjct: 242 ALLHEDKAIVTEVAGTTRDVIEEYVNVAGVPLKLIDTAGIRHTDDTVEKIGVERSKQAIE 301

Query: 298 NADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYS-------TYTEEYDHL 342
            ADLILLL        +E  +  E +  K    IF   K+DL +       T     D +
Sbjct: 302 TADLILLLIDSSRPLTEEDRALIEATAQKPRMVIF--NKTDLPAQVDLAELTELVNGDPV 359

Query: 343 ISSFTGE--GLEELINKI------KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
           I +   E  G++EL   I      + I SN+   +     ++ RH+  L Q V  L  A 
Sbjct: 360 IQTSILEHAGMQELGQAIAHRFFNEGIESNRGAVM----VTNARHIGLLHQAVDSLN-AV 414

Query: 395 LNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L   + G+  D++  ++  A  +LG+ITG    ++LLD +FS+FC+GK
Sbjct: 415 LEGIEAGMPVDLVQIDMTDAWNTLGEITGQTYQDELLDQLFSQFCLGK 462


>gi|255600342|ref|XP_002537439.1| gtpase mss1/trme, putative [Ricinus communis]
 gi|223516353|gb|EEF24944.1| gtpase mss1/trme, putative [Ricinus communis]
          Length = 416

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/406 (33%), Positives = 222/406 (54%), Gaps = 21/406 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      I ++R+SGP    +   I     P PR A+   F   D  ++D+G+
Sbjct: 11  DTIAAIATAPGAGGIGVVRVSGPLAADIATQILGHC-PAPRHAAYLPFLQADTTLIDRGI 69

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I FP+P S+TGED  E   HGG A++  +L    +    R A  GEF++RA+ N K+DL
Sbjct: 70  AIYFPNPHSYTGEDVLELQAHGGTALMQILLARCIEC-GARHAQAGEFTQRAYLNDKLDL 128

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI++ T    R ++  +SGE S      + +L  +R ++EA LDF EEE + 
Sbjct: 129 AQAEAVADLINAATVEAARSAVRSLSGEFSQAIQTLLQQLVDLRMYVEACLDFPEEE-ID 187

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +   VL+ +   +  +     Q + G ++R G  +V++G  N GKSSL NAL+ ++VA
Sbjct: 188 FITQGRVLDKLQANQAALQHIFDQARQGVLLREGINVVLIGQPNVGKSSLLNALSGEEVA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT I GTTRD +   + +EG  + + DTAG+RET+D VE+ GI RT+  +E A + LLL
Sbjct: 248 IVTPIAGTTRDTIKSVIQIEGVPLHVIDTAGLRETEDTVEQVGIARTWKAIETAHVALLL 307

Query: 306 KEINSKKEIS---------FPKNIDFIFIGTKSDLY--STYTEEYDH----LISSFTGEG 350
             ++S+  I           P  +  +++  K D+   ++  E++++     +S+ TG+G
Sbjct: 308 --VDSQHGIGAQEKAILHKLPPEVKKVWVHNKIDVSRETSRIEKHENEQHVFLSAKTGDG 365

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           +  L   +  I+  +       + +  RHL  L +  ++L+ A L 
Sbjct: 366 IASLQKTLLEIVGYQPGGEGVFM-ARARHLQALEEVEQHLDQAMLQ 410


>gi|194333061|ref|YP_002014921.1| tRNA modification GTPase TrmE [Prosthecochloris aestuarii DSM 271]
 gi|194310879|gb|ACF45274.1| tRNA modification GTPase TrmE [Prosthecochloris aestuarii DSM 271]
          Length = 476

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 250/466 (53%), Gaps = 31/466 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFG--LD 57
           E + I A++T     A+S++R+SG   F + + +  K      P          FG   D
Sbjct: 13  EGDPIAAIATPVGVGALSVVRMSGGGVFAIADKVFTKAHAPEVPIADSPGYTAHFGRLYD 72

Query: 58  GRIL-DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           G ++ D+ +++VF +P SFT E+  E   HGG  V   +L+ L      RLA PGEF+RR
Sbjct: 73  GDLMVDEVIVLVFRAPNSFTVENMVEITCHGGPVVTRHVLQLLLD-NGCRLAQPGEFTRR 131

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDLLEAE++ ++I + +E   R ++  M G LS       ++L    + +E +L
Sbjct: 132 AFINGRIDLLEAEAIGEMIHARSESAYRTAVNQMKGGLSGKLDTLRERLLTSCAMLELEL 191

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DFSEE DV+  S  E+ + +  L+ ++   +   + G ++  G    I+G  NAGKS+L 
Sbjct: 192 DFSEE-DVRFQSRDELTDQVERLQCEVGQLVDSYQHGRLLSEGVATAIIGRPNAGKSTLL 250

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  ++ AIV+ +PGTTRD +      +  + +++DTAG+RE  + +E EGI+R++ ++
Sbjct: 251 NALLGEERAIVSHMPGTTRDYIEECFVYDKTMFRLTDTAGLREAVEEIEHEGIRRSYEKI 310

Query: 297 ENADLILLLKEINS---KKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHLISSFT 347
             ADLIL L +I++    +EI+  + I   + GTK  + +  T      EE   ++   T
Sbjct: 311 AQADLILYLMDISAGDFAEEIAAIRTIAAQYPGTKMLVAANKTDRTASCEERMQMVGQET 370

Query: 348 G-----------EGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-S 394
           G           EGL+EL   + ++  N  K    S+  +  RH   L      L+ A  
Sbjct: 371 GCMVLGISALQQEGLDELKKAMGAMTENLDKLHDASVLVTSMRHYEALRNASDALQNARE 430

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L +++   + IA  LR A   +G+ITG V  E++L++IF +FCIGK
Sbjct: 431 LIDREEETEFIAFELRSALDYVGEITGKVVSEEVLNVIFDRFCIGK 476


>gi|125718082|ref|YP_001035215.1| tRNA modification GTPase TrmE [Streptococcus sanguinis SK36]
 gi|166234828|sp|A3CNB0|MNME_STRSV RecName: Full=tRNA modification GTPase mnmE
 gi|125497999|gb|ABN44665.1| tRNA modification GTPase, possibly iron-binding, putative
           [Streptococcus sanguinis SK36]
          Length = 457

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 259/459 (56%), Gaps = 22/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSEVESHTLNYGHIVDPQ 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGLPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           + ADL+LL+   +       ++ +   K+ + I +  K+DL      E D L      IS
Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISKDSNRIVLLNKTDLEEKI--ELDLLPTDVIKIS 358

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
               + ++++  +I  +   +    +   +  S+ RH+  + + +  L+  +   E    
Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|325978110|ref|YP_004287826.1| tRNA modification GTPase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178038|emb|CBZ48082.1| tRNA modification GTPase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 457

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 262/469 (55%), Gaps = 42/469 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           + +E +TI A+ST     AI I+RLSG     + + + + K    + AS    +G  +D 
Sbjct: 2   ITNEFDTIAAISTPLGEGAIGIVRLSGTEALAIAQKVYRGKD-LNKVASHTINYGHIVDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               +LD+ ++ V  +P++FT E+  E + HGG+AV N IL+ L      RLA PGEF++
Sbjct: 61  NTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEILQ-LVLRQGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   
Sbjct: 240 LNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKA 299

Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342
           +E ADL+LL+  +NS + ++          K+ + I +  K+DL      E D L     
Sbjct: 300 LEEADLVLLV--LNSSEPLTNQDRALLELSKDSNRIILLNKTDLPEKI--EADQLPDDVI 355

Query: 343 -ISSFTGEG---LEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
            IS    +    +EE IN++      I+      L     S+ RH+  + + V+ L+  +
Sbjct: 356 RISVLKNQNIDVIEERINQLFFDNAGIVEKDATYL-----SNARHISLIEKAVQSLQ--A 408

Query: 395 LNEK-DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +NE  + G+  D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 409 VNEGLELGMPVDLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457


>gi|30023508|ref|NP_835139.1| tRNA modification GTPase TrmE [Bacillus cereus ATCC 14579]
 gi|218234443|ref|YP_002370259.1| tRNA modification GTPase TrmE [Bacillus cereus B4264]
 gi|228924229|ref|ZP_04087500.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228961748|ref|ZP_04123351.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229112897|ref|ZP_04242428.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-15]
 gi|229130730|ref|ZP_04259683.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-Cer4]
 gi|229148034|ref|ZP_04276373.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST24]
 gi|296505912|ref|YP_003667612.1| tRNA modification GTPase TrmE [Bacillus thuringiensis BMB171]
 gi|46577419|sp|Q814F6|MNME_BACCR RecName: Full=tRNA modification GTPase mnmE
 gi|29899069|gb|AAP12340.1| Thiophene and furan oxidation protein ThdF [Bacillus cereus ATCC
           14579]
 gi|218162400|gb|ACK62392.1| tRNA modification GTPase TrmE [Bacillus cereus B4264]
 gi|228635459|gb|EEK91950.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST24]
 gi|228652747|gb|EEL08632.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-Cer4]
 gi|228670576|gb|EEL25889.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-15]
 gi|228797942|gb|EEM44952.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228835447|gb|EEM80817.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|296326964|gb|ADH09892.1| tRNA modification GTPase TrmE [Bacillus thuringiensis BMB171]
          Length = 458

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 253/459 (55%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +  + I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|94988539|ref|YP_596640.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS9429]
 gi|166234823|sp|Q1JLX3|MNME_STRPC RecName: Full=tRNA modification GTPase mnmE
 gi|94542047|gb|ABF32096.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS9429]
          Length = 458

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/462 (31%), Positives = 260/462 (56%), Gaps = 28/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G  +D 
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E + L      I
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKI--ELEQLPADLIPI 358

Query: 344 SSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK--- 398
           S  T + +  + ++I  +  +     +   +  S+ RH+  + + V+ LE  ++N+    
Sbjct: 359 SVLTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGLAL 416

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 417 GMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|288905136|ref|YP_003430358.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain
           [Streptococcus gallolyticus UCN34]
 gi|288731862|emb|CBI13427.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain
           [Streptococcus gallolyticus UCN34]
          Length = 457

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 262/469 (55%), Gaps = 42/469 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           + +E +TI A+ST     AI I+RLSG     + + + + K    + AS    +G  +D 
Sbjct: 2   ITNEFDTIAAISTPLGEGAIGIVRLSGTEALAIAQKVYRGKD-LNKVASHTINYGHIVDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               +LD+ ++ V  +P++FT E+  E + HGG+AV N IL+ L      RLA PGEF++
Sbjct: 61  DTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEILQ-LVLRQGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   
Sbjct: 240 LNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKA 299

Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342
           +E ADL+LL+  +NS + ++          K+ + I +  K+DL      E D L     
Sbjct: 300 LEEADLVLLV--LNSSEPLTNQDRALLELSKDSNRIILLNKTDLPEKI--EADQLPDDVI 355

Query: 343 -ISSFTGEG---LEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
            IS    +    +EE IN++      I+      L     S+ RH+  + + V+ L+  +
Sbjct: 356 RISVLKNQNIDVIEERINQLFFDNAGIVEKDATYL-----SNARHISLIEKAVQSLQ--A 408

Query: 395 LNEK-DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +NE  + G+  D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 409 VNEGLELGMPVDLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457


>gi|91214599|ref|ZP_01251572.1| tRNA modification GTPase [Psychroflexus torquis ATCC 700755]
 gi|91187026|gb|EAS73396.1| tRNA modification GTPase [Psychroflexus torquis ATCC 700755]
          Length = 470

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 160/477 (33%), Positives = 259/477 (54%), Gaps = 53/477 (11%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDG-RI 60
           +TI A++T +   AI++IR+SG    ++C  + + K        +  +L+     DG RI
Sbjct: 5   DTIIALATASGNGAIAVIRVSGNEALELCSPLFEAKSGISILDQKSHTLQLGTIQDGQRI 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L+ VF   +S+TGE + E   HG   +   I++ L K    R A PGEF+ RAF N
Sbjct: 65  LDEVLVSVFRGYKSYTGEPTVEISCHGSSFIQKEIIQLLIK-KGCRTAQPGEFTLRAFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADL+SS+     +L+M+ M G  ++   +   +L    S +E +LDFSE
Sbjct: 124 GKMDLSQAEAVADLVSSDNAASHQLAMQQMRGGFTNQIQELRQELLDFASLMELELDFSE 183

Query: 181 EEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E DV+ F+++E     +L ++  +S  I    +G +I+NG  + I+G  N GKS+L NAL
Sbjct: 184 E-DVE-FANREQFQALVLKIQKVLSRLIDSFAVGNVIKNGIPVAIVGEPNVGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV++I GTTRD +  ++ + G   +  DTAGIRET D +E  GI+RTF +++ +
Sbjct: 242 LNEERAIVSEIAGTTRDTIEDEISMGGIGFRFIDTAGIRETQDTIEGLGIQRTFEKIKQS 301

Query: 300 DLILLLKEINSKK-----------------------EISFPKNIDFIFIGTKSDLYST-- 334
            +I  +K I+S K                       E  FP+   F+ +  K+DL S   
Sbjct: 302 QVI--IKLIDSPKLFDDQQKLRTTEWKRIKADIHQLETDFPER-SFLLLANKADLLSPEN 358

Query: 335 ---YTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
               T+E++ L  IS+    G+EE+  ++ S + +   +   +I ++ RH   L      
Sbjct: 359 KDLLTKEFEDLLFISAKDKTGIEEIQTRLLSFVDDGALRNNDTIVTNSRHYNAL-----L 413

Query: 390 LEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L +  +N+   GL      D++A ++R A    G+ITG V  ++LL  IF+ FCIGK
Sbjct: 414 LALEEINKVQEGLNENLTTDLLAIDIRQALYHFGEITGEVTNDELLGNIFANFCIGK 470


>gi|71903433|ref|YP_280236.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS6180]
 gi|123639929|sp|Q48TS5|MNME_STRPM RecName: Full=tRNA modification GTPase mnmE
 gi|71802528|gb|AAX71881.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS6180]
          Length = 458

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/464 (31%), Positives = 260/464 (56%), Gaps = 32/464 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G  +D 
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
           ++ ADL+LL+   + K        ++  +  + I +  K+DL      E + L +     
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQGSNRIILLNKTDLEQKI--ELEQLPADLI-- 356

Query: 350 GLEELINKIKSILSNKFKKLPF----------SIPSHKRHLYHLSQTVRYLEMASLNEK- 398
            +  L N+  +++ ++  +L F          +  S+ RH+  + + V+ LE  ++N+  
Sbjct: 357 SISVLTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGL 414

Query: 399 --DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 415 ALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|118480511|ref|YP_897662.1| tRNA modification GTPase TrmE [Bacillus thuringiensis str. Al
           Hakam]
 gi|166200468|sp|A0RLR2|MNME_BACAH RecName: Full=tRNA modification GTPase mnmE
 gi|118419736|gb|ABK88155.1| tRNA modification GTPase trmE [Bacillus thuringiensis str. Al
           Hakam]
          Length = 458

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 253/459 (55%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +    I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEELFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|254456774|ref|ZP_05070202.1| tRNA modification GTPase TrmE [Campylobacterales bacterium GD 1]
 gi|207085566|gb|EDZ62850.1| tRNA modification GTPase TrmE [Campylobacterales bacterium GD 1]
          Length = 446

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/448 (31%), Positives = 247/448 (55%), Gaps = 14/448 (3%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A++T     +I+IIR+SG    ++ + +  KK   PR A+L         ++D+
Sbjct: 2   DNDTISAIATANGIGSIAIIRISGDRALEIAKKLTHKKDFSPRYATLTTVHNKKNELIDE 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++I F +P SFT ED  E   HGG  V   IL+   ++   RLAN GEFS+RAF NG+I
Sbjct: 62  SIVIYFKAPYSFTAEDVVEIQCHGGFIVAQSILKATLEL-GARLANAGEFSKRAFFNGRI 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL EAE++A LI +++E   ++  + M G L        D++ HI +F E  +D++EE D
Sbjct: 121 DLSEAEAIAQLIEAKSEDAAKILAQQMKGSLKEYIEDIRDEIIHILAFSEVSIDYAEE-D 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +     K++ + +  LK+ + S +   +  E +  G+K+ I+G  N GKSSL N+L   +
Sbjct: 180 LPEDLVKQIESKLSDLKSSLESTLLASRAREGLMQGFKVAIVGKPNVGKSSLLNSLLNYN 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV++I GTTRD +   + +  +L++I DTAGIRE +D +E+ GI+R+   ++ +D+++
Sbjct: 240 RAIVSEIAGTTRDTIEEQVKIGTHLIRIVDTAGIREANDEIERIGIERSLEAIQESDIVV 299

Query: 304 LL----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTY-TEEYDHLISSFTGEGLE 352
            L    + ++++ E          KN   IF+  K DL + + TE+ +  +   + + + 
Sbjct: 300 ALFDGSRVLDAEDEQILALVDKHTKNKHVIFVKNKIDLENKFSTEDINFDLELNSKDSVT 359

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            LI  +K+I+          + S +R +  +  T+  +E +    +D  L+I + +L  A
Sbjct: 360 SLIESLKNIMDVNNNSDEIMLIS-QRQIMAVQNTLNNIEESFYPLQDQELEIFSFHLNEA 418

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +  IT   + +++LD +F  FC+GK
Sbjct: 419 VKEMASITRPFENDEMLDKMFGSFCLGK 446


>gi|146297756|ref|YP_001181527.1| tRNA modification GTPase TrmE [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|166200470|sp|A4XN51|MNME_CALS8 RecName: Full=tRNA modification GTPase mnmE
 gi|145411332|gb|ABP68336.1| tRNA modification GTPase trmE [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 455

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 170/459 (37%), Positives = 258/459 (56%), Gaps = 27/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFP-RKASLRYFFGLD 57
           E +TI A+ST      I IIR+SG +  +V   I K K+       P R A+L   +  D
Sbjct: 2   EFDTIAAISTPIGTGGIGIIRISGQNSIEVAGKIIKSKRFNSIYDIPVRYAALVEVYDND 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +LI F +P S+TGED  E   HGG+ V+  ILE + K    R A PGEF++RA
Sbjct: 62  -EFIDQAILIKFKAPHSYTGEDVVEIQSHGGMVVLRRILEVVIK-NGARHAMPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ D+I+S+TE+ ++ + + + G LS    +  + L ++ S IEA +D
Sbjct: 120 FLNGRLDLSQAEAIIDIINSKTELLQKNAAKQLKGVLSKKIDEIAEILLNLISSIEASID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE E V   S +E+   I      I   +   + G  I++G   VI+G  N GKSSL N
Sbjct: 180 FSEHE-VDEISPQEIEKSIDTALEMIYRLLKTYETGRAIKSGIYTVIVGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K++ +IVTDIPGTTRDV+   LD+EG  + + DTAG+R+T+DIVE+ G++RT   VE
Sbjct: 239 RLLKEERSIVTDIPGTTRDVIEEVLDIEGIPIILVDTAGVRQTEDIVERIGVERTLKSVE 298

Query: 298 NADLILLLKEIN--SKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL- 351
            ADL++ + E +  +K++I   S  KN  +I +  K+D     ++  D +   F  EG+ 
Sbjct: 299 RADLVIFMIESDGITKEDIEIFSSIKNKKYIILVNKTDKGINISQ--DEIKKLFGKEGIF 356

Query: 352 --------EELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
                    EL+ K   ++IL    +     + ++ RH   L +   +L  A  N     
Sbjct: 357 ISIAKDENLELVEKAIKEAILEQNIEGFDEVLITNLRHKELLLKAKGFLTSAKQNLYSFP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LDI++ +L+ A  S+ +ITG    E ++D IFS FCIGK
Sbjct: 417 LDILSIDLKNALDSIYQITGKNVTEDMVDRIFSMFCIGK 455


>gi|291319989|ref|YP_003515247.1| tRNA modification GTPase TrmE [Mycoplasma agalactiae]
 gi|290752318|emb|CBH40289.1| TRNA modification GTPase (TrmE) [Mycoplasma agalactiae]
          Length = 445

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 163/456 (35%), Positives = 248/456 (54%), Gaps = 35/456 (7%)

Query: 6   ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF--FG-----LD 57
           +TI A+S+G  +  AISIIR+SGP    V       KK F  K    +   FG     L+
Sbjct: 4   DTITAISSGGKINQAISIIRVSGPDSVNVV------KKIFTGKVGTSHTITFGNIIDNLN 57

Query: 58  GR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           G  ++D+ L + F    +F GED+ E + HGG+ + N ILE L      RLA PGEFSRR
Sbjct: 58  GNEVIDEVLCMWFLGTNNFVGEDTVEINCHGGVVITNRILELLLS-NGARLAEPGEFSRR 116

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           +F NGK+DL++AE++ DLI + T  Q +L+++   G+ S    +  D+L ++   +E  +
Sbjct: 117 SFLNGKMDLIKAEAINDLIHASTVSQTKLAIKKFDGKTSMYIQELKDELAYLIGEMEVSI 176

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  D  N  + ++++ +  ++N IS  I   +   +I  G KI ILG  N GKSS+ 
Sbjct: 177 DYPEY-DFDNPFTDKLMSRLESIRNKISKTIELSQTSRMIFEGIKIAILGKPNVGKSSIL 235

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NA+ ++D AIVTDI GTTRD++      +G L K  DTAGIR+T + +EK GI ++F ++
Sbjct: 236 NAILEEDKAIVTDIAGTTRDIVEAMWQYKGLLFKFIDTAGIRDTKEKIEKIGIDKSFEQI 295

Query: 297 ENADLILLL-------KEINSK-KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           E AD++L +        E +S+ K  +   N  ++ +  K DL  T  +E+  L  S   
Sbjct: 296 EKADVVLHIYDPSQNDNEFDSQIKNKAHSLNKIYVPVINKKDLLETTNDEF--LYVSAKL 353

Query: 349 EGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDI 404
             L+ L  K+ S+    FK +  +     ++ R L  + Q  + LE A  + K     D+
Sbjct: 354 NDLDPLKEKLVSV----FKNIDLNNDQYVNNSRQLALIKQAHKSLEDAIKSIKLGYDPDV 409

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +LR A   L  ITG  D E LLD +F  FC+GK
Sbjct: 410 VIIDLRQAWSHLTDITGRADNELLLDEMFKNFCLGK 445


>gi|229547152|ref|ZP_04435877.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1322]
 gi|255971528|ref|ZP_05422114.1| tRNA modification GTPase [Enterococcus faecalis T1]
 gi|255974478|ref|ZP_05425064.1| tRNA modification GTPase [Enterococcus faecalis T2]
 gi|256761833|ref|ZP_05502413.1| tRNA modification GTPase [Enterococcus faecalis T3]
 gi|256854960|ref|ZP_05560321.1| tRNA modification GTPase mnmE [Enterococcus faecalis T8]
 gi|256957036|ref|ZP_05561207.1| tRNA modification GTPase [Enterococcus faecalis DS5]
 gi|256960899|ref|ZP_05565070.1| tRNA modification GTPase [Enterococcus faecalis Merz96]
 gi|256963961|ref|ZP_05568132.1| tRNA modification GTPase [Enterococcus faecalis HIP11704]
 gi|257078713|ref|ZP_05573074.1| tRNA modification GTPase [Enterococcus faecalis JH1]
 gi|257081326|ref|ZP_05575687.1| tRNA modification GTPase [Enterococcus faecalis E1Sol]
 gi|257083984|ref|ZP_05578345.1| tRNA modification GTPase [Enterococcus faecalis Fly1]
 gi|257087814|ref|ZP_05582175.1| tRNA modification GTPase [Enterococcus faecalis D6]
 gi|257088459|ref|ZP_05582820.1| tRNA modification GTPase [Enterococcus faecalis CH188]
 gi|257421323|ref|ZP_05598313.1| tRNA modification GTPase trmE [Enterococcus faecalis X98]
 gi|293384792|ref|ZP_06630639.1| tRNA modification GTPase TrmE [Enterococcus faecalis R712]
 gi|293388148|ref|ZP_06632672.1| tRNA modification GTPase TrmE [Enterococcus faecalis S613]
 gi|294781227|ref|ZP_06746574.1| tRNA modification GTPase TrmE [Enterococcus faecalis PC1.1]
 gi|300861676|ref|ZP_07107760.1| tRNA modification GTPase TrmE [Enterococcus faecalis TUSoD Ef11]
 gi|307268891|ref|ZP_07550256.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4248]
 gi|307273989|ref|ZP_07555199.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0855]
 gi|307277334|ref|ZP_07558432.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2134]
 gi|307284016|ref|ZP_07564186.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0860]
 gi|307286637|ref|ZP_07566727.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0109]
 gi|307296566|ref|ZP_07576387.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0411]
 gi|312901323|ref|ZP_07760604.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0470]
 gi|312902969|ref|ZP_07762158.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0635]
 gi|312908837|ref|ZP_07767776.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 512]
 gi|312952943|ref|ZP_07771799.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0102]
 gi|312979521|ref|ZP_07791203.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 516]
 gi|229307734|gb|EEN73721.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1322]
 gi|255962546|gb|EET95022.1| tRNA modification GTPase [Enterococcus faecalis T1]
 gi|255967350|gb|EET97972.1| tRNA modification GTPase [Enterococcus faecalis T2]
 gi|256683084|gb|EEU22779.1| tRNA modification GTPase [Enterococcus faecalis T3]
 gi|256709473|gb|EEU24520.1| tRNA modification GTPase mnmE [Enterococcus faecalis T8]
 gi|256947532|gb|EEU64164.1| tRNA modification GTPase [Enterococcus faecalis DS5]
 gi|256951395|gb|EEU68027.1| tRNA modification GTPase [Enterococcus faecalis Merz96]
 gi|256954457|gb|EEU71089.1| tRNA modification GTPase [Enterococcus faecalis HIP11704]
 gi|256986743|gb|EEU74045.1| tRNA modification GTPase [Enterococcus faecalis JH1]
 gi|256989356|gb|EEU76658.1| tRNA modification GTPase [Enterococcus faecalis E1Sol]
 gi|256992014|gb|EEU79316.1| tRNA modification GTPase [Enterococcus faecalis Fly1]
 gi|256995844|gb|EEU83146.1| tRNA modification GTPase [Enterococcus faecalis D6]
 gi|256997271|gb|EEU83791.1| tRNA modification GTPase [Enterococcus faecalis CH188]
 gi|257163147|gb|EEU93107.1| tRNA modification GTPase trmE [Enterococcus faecalis X98]
 gi|291077923|gb|EFE15287.1| tRNA modification GTPase TrmE [Enterococcus faecalis R712]
 gi|291082456|gb|EFE19419.1| tRNA modification GTPase TrmE [Enterococcus faecalis S613]
 gi|294451690|gb|EFG20145.1| tRNA modification GTPase TrmE [Enterococcus faecalis PC1.1]
 gi|295112327|emb|CBL30964.1| tRNA modification GTPase trmE [Enterococcus sp. 7L76]
 gi|300849137|gb|EFK76890.1| tRNA modification GTPase TrmE [Enterococcus faecalis TUSoD Ef11]
 gi|306495993|gb|EFM65580.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0411]
 gi|306502266|gb|EFM71548.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0109]
 gi|306503387|gb|EFM72636.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0860]
 gi|306505968|gb|EFM75140.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2134]
 gi|306509297|gb|EFM78357.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0855]
 gi|306514807|gb|EFM83357.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4248]
 gi|310625275|gb|EFQ08558.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 512]
 gi|310629084|gb|EFQ12367.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0102]
 gi|310633637|gb|EFQ16920.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0635]
 gi|311287703|gb|EFQ66259.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 516]
 gi|311291556|gb|EFQ70112.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0470]
 gi|315026593|gb|EFT38525.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2137]
 gi|315030087|gb|EFT42019.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4000]
 gi|315033580|gb|EFT45512.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0017]
 gi|315036245|gb|EFT48177.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0027]
 gi|315143559|gb|EFT87575.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2141]
 gi|315148303|gb|EFT92319.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4244]
 gi|315151268|gb|EFT95284.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0012]
 gi|315152698|gb|EFT96714.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0031]
 gi|315155022|gb|EFT99038.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0043]
 gi|315158703|gb|EFU02720.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0312]
 gi|315163425|gb|EFU07442.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0645]
 gi|315165648|gb|EFU09665.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1302]
 gi|315172073|gb|EFU16090.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1342]
 gi|315174206|gb|EFU18223.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1346]
 gi|315579747|gb|EFU91938.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0630]
 gi|327536410|gb|AEA95244.1| tRNA modification GTPase TrmE [Enterococcus faecalis OG1RF]
 gi|329577012|gb|EGG58487.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1467]
          Length = 465

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 149/463 (32%), Positives = 257/463 (55%), Gaps = 30/463 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LD 57
           E +TI A+ST     AISI+RLSG     +   + +   K   +  +    +G      +
Sbjct: 7   EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 66

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ +L V  +P++FT ED  E + HGGI VVN +L+ L +    R+A PGEF++RA
Sbjct: 67  DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMAEPGEFTKRA 125

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E ++D
Sbjct: 126 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNID 185

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 186 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLN 245

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   + 
Sbjct: 246 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 305

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342
           ++DLILL+  +N  +E++          K +  + +  K DL +     E   L      
Sbjct: 306 DSDLILLV--LNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363

Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             +S  +  GL++L  KI  +    +  +   +  S+ RH+  L Q    L+   +N  +
Sbjct: 364 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEV-INGIE 422

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|78776726|ref|YP_393041.1| tRNA modification GTPase TrmE [Sulfurimonas denitrificans DSM 1251]
 gi|123550691|sp|Q30T75|MNME_SULDN RecName: Full=tRNA modification GTPase mnmE
 gi|78497266|gb|ABB43806.1| tRNA modification GTPase trmE [Sulfurimonas denitrificans DSM 1251]
          Length = 446

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/454 (32%), Positives = 243/454 (53%), Gaps = 28/454 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A++T     +I+IIR+SG    ++   I  K    PR ASL   +   G ++D+ 
Sbjct: 3   EDTISAIATANGIGSIAIIRISGDRALEIASKITHKDNFTPRYASLSNIYDFHGELIDEA 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFT ED  E   HGG  V   IL+    +   RLA  GEFS+RAF NG+ID
Sbjct: 63  IVIYFKAPFSFTAEDVVEIQCHGGFIVAQSILK-TTLLHGARLATAGEFSKRAFFNGRID 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++A LI +++E   ++  + M G L     +  D L HI ++ E  +D++EE D+
Sbjct: 122 LSKAEAIAQLIEAKSEDAAKILAQQMKGSLKEYVEKIRDDLIHILAYSEVSIDYAEE-DL 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                 ++   +  LK  ++  +   K  E +  G+K+ I+G  N GKSSL NAL   + 
Sbjct: 181 PEDLVMQIQAKLKELKTSLNKTLQASKAREGLMQGFKVAIIGKPNVGKSSLLNALLNYNR 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL- 303
           AIV+DI GTTRD +   + +  +L++I DTAGIRE  D +E+ GI+R+   +  +D+++ 
Sbjct: 241 AIVSDIAGTTRDTIEEQVKIGTHLIRIVDTAGIREASDEIERIGIERSLEAINESDIVIA 300

Query: 304 --------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE---EYDHLISSF 346
                         +L  I SK   +  KN+  + +  K DL   +     E+D  I+S 
Sbjct: 301 LFDASRVADYEDEQILSLIESK---AGSKNV--LHVKNKIDLEEKFYRSSLEFDIEINS- 354

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
             EG+EELI  +++I++         + S +R +  +  T+ Y++ A    ++  L+I +
Sbjct: 355 -KEGVEELILALENIMNQANTSDEMMLIS-QRQIGAVQNTLNYIDEAFEPLQEQELEIFS 412

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            NL  A   +  IT   + +++LD +F  FC+GK
Sbjct: 413 FNLNEAIKEIASITRPFENDEMLDKMFGSFCLGK 446


>gi|29377753|ref|NP_816907.1| tRNA modification GTPase TrmE [Enterococcus faecalis V583]
 gi|227555662|ref|ZP_03985709.1| tRNA modification GTPase TrmE [Enterococcus faecalis HH22]
 gi|257418862|ref|ZP_05595856.1| tRNA modification GTPase [Enterococcus faecalis T11]
 gi|46577423|sp|Q820T0|MNME_ENTFA RecName: Full=tRNA modification GTPase mnmE
 gi|29345221|gb|AAO82977.1| tRNA modification GTPase TrmE [Enterococcus faecalis V583]
 gi|227175215|gb|EEI56187.1| tRNA modification GTPase TrmE [Enterococcus faecalis HH22]
 gi|257160690|gb|EEU90650.1| tRNA modification GTPase [Enterococcus faecalis T11]
 gi|315576168|gb|EFU88359.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0309B]
 gi|315582978|gb|EFU95169.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0309A]
          Length = 465

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 149/463 (32%), Positives = 257/463 (55%), Gaps = 30/463 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LD 57
           E +TI A+ST     AISI+RLSG     +   + +   K   +  +    +G      +
Sbjct: 7   EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 66

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ +L V  +P++FT ED  E + HGGI VVN +L+ L +    R+A PGEF++RA
Sbjct: 67  DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMAEPGEFTKRA 125

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E ++D
Sbjct: 126 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSTLIRSLRQEILNTLAQVEVNID 185

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 186 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLN 245

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   + 
Sbjct: 246 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 305

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342
           ++DLILL+  +N  +E++          K +  + +  K DL +     E   L      
Sbjct: 306 DSDLILLV--LNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363

Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             +S  +  GL++L  KI  +    +  +   +  S+ RH+  L Q    L+   +N  +
Sbjct: 364 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEV-INGIE 422

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|229051153|ref|ZP_04194697.1| tRNA modification GTPase mnmE [Bacillus cereus AH676]
 gi|228722216|gb|EEL73617.1| tRNA modification GTPase mnmE [Bacillus cereus AH676]
          Length = 458

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 253/459 (55%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +  + I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVIDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|242823879|ref|XP_002488148.1| mitochondrial GTPase (Mss1), putative [Talaromyces stipitatus ATCC
           10500]
 gi|218713069|gb|EED12494.1| mitochondrial GTPase (Mss1), putative [Talaromyces stipitatus ATCC
           10500]
          Length = 628

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/320 (39%), Positives = 184/320 (57%), Gaps = 37/320 (11%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-----DGRI 60
           TI+A+ST    +AI+IIR+SGP+C Q+   +C + + P  R A++R  +          +
Sbjct: 83  TIYALSTAPGRAAIAIIRISGPACLQIYRALCPRARDPKQRMATVRALYDPTQAPSPNTL 142

Query: 61  LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--------------- 104
           LD   L++ FPSP + TGED  E HVHGG A V  +L  + K  +               
Sbjct: 143 LDPSALVLYFPSPRTVTGEDVLELHVHGGPATVKAVLNAIEKCNDVIKSEHDNISQSSSF 202

Query: 105 LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK 164
           +R A PGEF+RRAF N  +DL + E+L + +++ETE QRRL++ G +  LS+ Y  W  +
Sbjct: 203 IRYAEPGEFTRRAFMNDVLDLPQIEALGETLNAETEQQRRLAVRGANTTLSARYEDWRQQ 262

Query: 165 LTHIRSFIEADLDFSEEEDVQNF--SSKEVLN----DILFLKNDISSHISQGKLGEIIRN 218
           L + R  +EA +DFSE+   Q+F  S +E++      +  L+  I  HI     GE++RN
Sbjct: 263 LLYARGELEALIDFSED---QHFDESPQELIGSVSAQVAILRQQIRFHIQNASKGELLRN 319

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI +LG  NAGKSSL N +  K+ AIV+   GTTRD++ + +DL G+  KI D AG+R
Sbjct: 320 GIKIALLGAPNAGKSSLLNRVVGKEAAIVSTEEGTTRDIVDVGIDLGGWYCKIGDMAGLR 379

Query: 279 ETDD------IVEKEGIKRT 292
            + +       VE EGI+R 
Sbjct: 380 SSKNEREKIGAVELEGIRRA 399



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 2/46 (4%)

Query: 397 EKDCGLDIIAENLRLASVSLGKITG--CVDVEQLLDIIFSKFCIGK 440
           E D  +   AENLR A+ SL +ITG    DVE +L ++F KFC+GK
Sbjct: 583 ESDVDIVTAAENLRFAAESLAQITGRGGADVEDVLGVVFEKFCVGK 628


>gi|291532561|emb|CBL05674.1| tRNA modification GTPase trmE [Megamonas hypermegale ART12/1]
          Length = 465

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 148/402 (36%), Positives = 224/402 (55%), Gaps = 22/402 (5%)

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ++D+ L I   +P S+T E+  E   HGG  VV  ILE LA     R+A PGEF++RA
Sbjct: 67  GNVIDEALCIAMWAPNSYTKENVVEIQSHGGALVVRRILE-LALQNGARMAEPGEFTKRA 125

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +A+S+ D+I + T+   R++   + G+ S         +  + + +EA +D
Sbjct: 126 FLNGRLDLSQAQSVMDIIKARTDASLRMAAGHLQGKFSDEIKAMRHDILEVIAHLEASID 185

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E+ D+++ +  E    +  +KN I   +S    G I+R+G    I+G  N GKSSL N
Sbjct: 186 FPED-DIEDVAKDEASAKVRSIKNRIEEMLSTFNTGRILRDGLVTAIIGKPNVGKSSLLN 244

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L ++D AIVTDIPGTTRD L    ++ G  +KI DTAGIRET+D VE+ G++++   V+
Sbjct: 245 TLLREDRAIVTDIPGTTRDSLEEYANIGGVPLKIIDTAGIRETEDKVEQIGVEKSMSYVQ 304

Query: 298 NADLILLLKEINS--KKE----ISFPKNIDFIFIGTKSDLYSTYTEE---------YDHL 342
            ADLIL L + +S   KE    I+  +  + I + TK+DL      E         + ++
Sbjct: 305 KADLILALFDTSSDLTKEDEEIINLLQGKEGIVLLTKNDLSCVLDIEDLQKRLQGNFKYM 364

Query: 343 -ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EK 398
            IS+F  +G++EL  +I   + S   K+      ++ R    L +  +YLE   LN  E 
Sbjct: 365 QISTFNNDGIKELEQEIVNRVYSGTVKQTEGVFVNNVRQANALKEAQKYLE-DCLNTIEM 423

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D   D I  ++R A   LG+ITG    E ++D IFS+FCIGK
Sbjct: 424 DMAEDFIVIDIRSAWEKLGEITGDTVDEDIIDQIFSQFCIGK 465


>gi|229072949|ref|ZP_04206145.1| tRNA modification GTPase mnmE [Bacillus cereus F65185]
 gi|228710195|gb|EEL62173.1| tRNA modification GTPase mnmE [Bacillus cereus F65185]
          Length = 458

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 252/459 (54%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LD-G 58
           E +TI A+ST     AI+I+R+SG    +    I K K      +S    +G    LD  
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGK-DLTEVSSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|229550722|ref|ZP_04439447.1| tRNA modification GTPase TrmE [Enterococcus faecalis ATCC 29200]
 gi|229304155|gb|EEN70151.1| tRNA modification GTPase TrmE [Enterococcus faecalis ATCC 29200]
          Length = 465

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 149/463 (32%), Positives = 257/463 (55%), Gaps = 30/463 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LD 57
           E +TI A+ST     AISI+RLSG     +   + +   K   +  +    +G      +
Sbjct: 7   EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 66

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ +L V  +P++FT ED  E + HGGI VVN +L+ L +    R+A PGEF++RA
Sbjct: 67  DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMAEPGEFTKRA 125

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E ++D
Sbjct: 126 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNID 185

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 186 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLN 245

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   + 
Sbjct: 246 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 305

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342
           ++DLILL+  +N  +E++          K +  + +  K DL +     E   L      
Sbjct: 306 DSDLILLV--LNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363

Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             +S  +  GL++L  KI  +    +  +   +  S+ RH+  L Q    L+   +N  +
Sbjct: 364 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAAISLQEV-INGIE 422

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|310659884|ref|YP_003937605.1| GTPase [Clostridium sticklandii DSM 519]
 gi|308826662|emb|CBH22700.1| GTPase [Clostridium sticklandii]
          Length = 459

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 157/458 (34%), Positives = 251/458 (54%), Gaps = 26/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLDGR 59
           +TI AV+T    + I I+RLSGP    +   I K  K         RK    + +  D +
Sbjct: 5   DTIAAVATAPGEAGIGIVRLSGPKALDIANKIFKPIKGNTDLSMQVRKLVYGHVYDQD-K 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ L+     P +FT ED  E + HGG   V  ILE + +    RLA+ GEF++RAF 
Sbjct: 64  VIDEVLISYMKKPHTFTREDVVEINCHGGYISVRKILEAVIR-NGARLADRGEFTKRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+++T     ++ + + G LS+   Q  DKLT   + I   +DF 
Sbjct: 123 NGRIDLSQAEAIIDIINAKTNASFDIAQKHLEGNLSASIKQIRDKLTMDLAKITVAIDFP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE++ +  + +E+  D+  +   I   I+  + G+I+R+G K VI+G  N GKSSL NA+
Sbjct: 183 EEDEPE-VTYEELSVDLREVMTSIKGLIASFETGKILRDGLKTVIVGKPNVGKSSLLNAI 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K+  AIVT+I GTTRD++   +++ G  +KI DTAGIRETDD+VEK G++++    E+A
Sbjct: 242 LKESRAIVTEIEGTTRDIIEEYVNIGGIPLKIVDTAGIRETDDLVEKIGVQKSKESFESA 301

Query: 300 DLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LIS 344
           DL++++    + ++++ +  +S   +   I +  K+DL S  T++  H          IS
Sbjct: 302 DLVIMMLDSSRHLSNQDQDILSLLGDKKAIILVNKTDLPSMVTDDEIHNYAKGKPIIRIS 361

Query: 345 SFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402
           +   +G++ L  +I++ +L    K     + ++ RH   L +       A     D   L
Sbjct: 362 ALEKKGIDLLEKEIENMVLEGSLKTQNDIMVTNARHKMALERAFEACSDALTALADNIPL 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           DI   + + A   LG ITG    E LLD IF +FCIGK
Sbjct: 422 DIAETDFKNAWNELGHITGDTVSEDLLDTIFREFCIGK 459


>gi|55822936|ref|YP_141377.1| tRNA modification GTPase TrmE [Streptococcus thermophilus CNRZ1066]
 gi|116627781|ref|YP_820400.1| tRNA modification GTPase TrmE [Streptococcus thermophilus LMD-9]
 gi|81559421|sp|Q5LZW3|MNME_STRT1 RecName: Full=tRNA modification GTPase mnmE
 gi|122267622|sp|Q03KR8|MNME_STRTD RecName: Full=tRNA modification GTPase mnmE
 gi|55738921|gb|AAV62562.1| thiophene and furan oxidation protein [Streptococcus thermophilus
           CNRZ1066]
 gi|116101058|gb|ABJ66204.1| tRNA modification GTPase trmE [Streptococcus thermophilus LMD-9]
 gi|312278338|gb|ADQ62995.1| tRNA modification GTPase mnmE [Streptococcus thermophilus ND03]
          Length = 456

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/458 (31%), Positives = 255/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI I+RLSG     +   + K K       S    +G    +
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDAIAIANKVFKGKN-LETVDSHTINYGHIVEN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ ++ V  +P++FT ED  E + HGG+AV N IL+ L +    R+A PGEF++RA
Sbjct: 62  NEIIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIR-SGARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLI ++T+    +++  + G L +L      ++ +  + +E ++D
Sbjct: 121 FLNGRIDLTQAEAVMDLIRAKTDKAMTVAVSQLDGSLKNLINNTRQEILNTLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++  V       +  + + ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 181 YPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDD+VEK G++R+   +E
Sbjct: 241 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALE 300

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345
            ADL+LL+  +NS + ++          +N + I +  K+DL  +  TEE       IS 
Sbjct: 301 EADLVLLV--LNSSEPLTDQDRTLLDISQNSNRIILLNKTDLPQAIQTEELPEDLIPISV 358

Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              E ++++ ++I  +  +     +   +  S+ RH+  + + +  LE  +   E    +
Sbjct: 359 LKNENIDKIEDRINQLFFDNAGLVEKDATYLSNARHISLIEKALESLEAVNQGLELGMPV 418

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 DLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456


>gi|323479218|gb|ADX78657.1| tRNA modification GTPase TrmE [Enterococcus faecalis 62]
          Length = 460

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 149/463 (32%), Positives = 257/463 (55%), Gaps = 30/463 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LD 57
           E +TI A+ST     AISI+RLSG     +   + +   K   +  +    +G      +
Sbjct: 2   EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ +L V  +P++FT ED  E + HGGI VVN +L+ L +    R+A PGEF++RA
Sbjct: 62  DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E ++D
Sbjct: 121 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 181 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   + 
Sbjct: 241 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 300

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342
           ++DLILL+  +N  +E++          K +  + +  K DL +     E   L      
Sbjct: 301 DSDLILLV--LNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 358

Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             +S  +  GL++L  KI  +    +  +   +  S+ RH+  L Q    L+   +N  +
Sbjct: 359 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEV-INGIE 417

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 418 AGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 460


>gi|330998375|ref|ZP_08322199.1| tRNA modification GTPase TrmE [Paraprevotella xylaniphila YIT
           11841]
 gi|329568481|gb|EGG50286.1| tRNA modification GTPase TrmE [Paraprevotella xylaniphila YIT
           11841]
          Length = 464

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 156/469 (33%), Positives = 247/469 (52%), Gaps = 41/469 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP---RKASLRYFFGL--- 56
           ++TI A++T A   AI +IR+SG     + +  F    K P P   RKA    F  +   
Sbjct: 4   QDTICAIAT-AQGGAIGVIRISGKDAIAITDRIFTPAGKHPLPLSERKAYTMAFGHIRQD 62

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           DG I+D+ L+ +F SP S+TGED  E   HG   ++  +++ L +    R A PGEF++R
Sbjct: 63  DGEIIDEVLIGLFKSPHSYTGEDCVEISCHGSSFILQQVMQLLIR-KGCRAAGPGEFTQR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGK+DL +AE++ADLI+S +    R++M  M G  S       ++L H+ S +E +L
Sbjct: 122 AFLNGKMDLSQAEAVADLIASSSAATHRMAMNQMRGGFSRELSALRERLLHLTSLMELEL 181

Query: 177 DFSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           DFS+ E+++ F+ +  L  I   ++  IS  +    +G +++NG  + I+G +NAGKS+L
Sbjct: 182 DFSDHEELE-FADRSELETIAGDIEKVISGLVHSFSVGNVLKNGIPVAIVGETNAGKSTL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  ++ AIV+DI GTTRDV+   ++L G   +  DTAGIR+T D +E  GI R+F +
Sbjct: 241 LNTLLNEEKAIVSDIHGTTRDVIEDTVNLSGITFRFIDTAGIRDTHDTIENMGIARSFHK 300

Query: 296 VENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---- 342
           +E A+++L + +           S + +    N   I +  KSD  S    +   L    
Sbjct: 301 MEQAEIVLWVVDNTCAEAQIRQLSPRILPLCSNKQLIILLNKSDQASPIPTKLSGLPENT 360

Query: 343 ----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               IS+    G++EL N +  + S         I ++ RH   LS     L +  ++  
Sbjct: 361 VTLSISAKEKTGIQELQNLLVKVASVPELTSSDLIVTNVRHYEALS-----LALEDIHRV 415

Query: 399 DCGL------DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
             GL      D I+++LR     L +I G  +  +++L  IF  FCIGK
Sbjct: 416 QNGLQTHLSGDFISQDLRGCLFHLAEIVGGEITTDEVLGNIFKNFCIGK 464


>gi|148377321|ref|YP_001256197.1| tRNA modification GTPase TrmE [Mycoplasma agalactiae PG2]
 gi|205415799|sp|A5IXJ1|MNME_MYCAP RecName: Full=tRNA modification GTPase mnmE
 gi|148291367|emb|CAL58750.1| TRNA modification GTPase (TrmE) [Mycoplasma agalactiae PG2]
          Length = 445

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 163/456 (35%), Positives = 247/456 (54%), Gaps = 35/456 (7%)

Query: 6   ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF--FG-----LD 57
           +TI A+S+G  +  AISIIR+SGP    V       KK F  K    +   FG     L+
Sbjct: 4   DTITAISSGGKINQAISIIRVSGPDSVNVV------KKIFTGKVGTSHTITFGNIVDNLN 57

Query: 58  GR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           G  ++D+ L + F    +F GED+ E + HGG+ + N ILE L      RLA PGEFSRR
Sbjct: 58  GNEVIDEVLCMWFLGTNNFVGEDTVEINCHGGVVITNSILE-LLLANGARLAEPGEFSRR 116

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           +F NGK+DL++AE++ DLI + T  Q +L+++   G+ S       D+L ++   +E  +
Sbjct: 117 SFLNGKMDLIKAEAINDLIHASTVSQTKLAIKKFDGKTSMYIQDLKDELAYLIGEMEVSI 176

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  D  N  + ++++ +  ++N IS  I   +   +I  G KI ILG  N GKSS+ 
Sbjct: 177 DYPEY-DFDNPFTDKLISRLESIRNKISKTIELSQTSRMIFEGIKIAILGKPNVGKSSIL 235

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NA+ ++D AIVTDI GTTRD++      +G L K  DTAGIR+T + +EK GI ++F ++
Sbjct: 236 NAILEEDKAIVTDIAGTTRDIVEAMWQYKGLLFKFIDTAGIRDTKEKIEKIGIDKSFEQI 295

Query: 297 ENADLILLL-------KEINSK-KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           E AD++L +        E +S+ K  +   N  ++ +  K DL  T  +E+  L  S   
Sbjct: 296 EKADVVLHIYDPSQNDNEFDSQIKNKAHSLNKIYVPVINKKDLLETTNDEF--LYVSAKL 353

Query: 349 EGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDI 404
             L+ L  K+ S+    FK +  +     ++ R L  + Q  + LE A  + K     D+
Sbjct: 354 NDLDPLKEKLVSV----FKNVDLNNDQYVNNSRQLALIKQAHKSLEDAIKSIKLGYDPDV 409

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +LR A   L  ITG  D E LLD +F  FC+GK
Sbjct: 410 VIIDLRQAWSHLTDITGRADNELLLDEMFKNFCLGK 445


>gi|332882875|ref|ZP_08450484.1| tRNA modification GTPase TrmE [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679195|gb|EGJ52183.1| tRNA modification GTPase TrmE [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 464

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 157/469 (33%), Positives = 247/469 (52%), Gaps = 41/469 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP---RKASLRYFFGL--- 56
           ++TI A++T A   AI +IR+SG     + +  F    K P P   RKA    F  +   
Sbjct: 4   QDTICAIAT-AQGGAIGVIRISGKDAIAITDRIFTPVGKHPLPLSERKAYTMAFGHIRQD 62

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           DG I+D+ L+ +F SP S+TGED  E   HG   ++  +++ L +    R A PGEF++R
Sbjct: 63  DGEIIDEVLIGLFKSPHSYTGEDCVEISCHGSSFILQQVMQLLIR-KGCRAAGPGEFTQR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGK+DL +AE++ADLI+S +    R++M  M G  S       ++L H+ S +E +L
Sbjct: 122 AFLNGKMDLSQAEAVADLIASSSAATHRMAMNQMRGGFSRELSALRERLLHLTSLMELEL 181

Query: 177 DFSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           DFS+ E+++ F+ +  L  I   ++  IS  +    +G +++NG  + I+G +NAGKS+L
Sbjct: 182 DFSDHEELE-FADRSELETIAGDIEKVISGLVHSFSVGNVLKNGIPVAIVGETNAGKSTL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  ++ AIV+DI GTTRDV+   ++L G   +  DTAGIR+T D +E  GI R+F +
Sbjct: 241 LNTLLNEEKAIVSDIHGTTRDVIEDTVNLSGITFRFIDTAGIRDTHDTIENMGIARSFHK 300

Query: 296 VENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---- 342
           +E A+++L + +           S + +    N   I +  KSD  S    +   L    
Sbjct: 301 MEQAEIVLWVVDNTCAEAQIRQLSPRILPLCSNKQLIILLNKSDQVSAVPTKLSGLPENT 360

Query: 343 ----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               IS+    G++EL N +    S         I ++ RH   LS     L +  ++  
Sbjct: 361 VTLSISAKEKTGIQELQNLLVKTASVPELTSSDLIVTNVRHYEALS-----LALEDIHRV 415

Query: 399 DCGL------DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
             GL      D I+++LR     L +I G  +  +++L  IF KFCIGK
Sbjct: 416 QNGLQTHLSGDFISQDLRECLFHLAEIVGGEITADEVLGNIFMKFCIGK 464


>gi|42784680|ref|NP_981927.1| tRNA modification GTPase TrmE [Bacillus cereus ATCC 10987]
 gi|81408275|sp|Q72WU3|MNME_BACC1 RecName: Full=tRNA modification GTPase mnmE
 gi|42740612|gb|AAS44535.1| tRNA modification GTPase TrmE [Bacillus cereus ATCC 10987]
          Length = 458

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +    I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRIITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|229099911|ref|ZP_04230834.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-29]
 gi|229118974|ref|ZP_04248319.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-3]
 gi|228664499|gb|EEL19995.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-3]
 gi|228683526|gb|EEL37481.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-29]
          Length = 458

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +    I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLIVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQGIDMERVAELAAGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEQAIAELFFEGTIDSADMTYVSNARHIGLLTQAEKTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|206970179|ref|ZP_03231132.1| tRNA modification GTPase TrmE [Bacillus cereus AH1134]
 gi|228955734|ref|ZP_04117729.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229082698|ref|ZP_04215145.1| tRNA modification GTPase mnmE [Bacillus cereus Rock4-2]
 gi|229193735|ref|ZP_04320676.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 10876]
 gi|206734756|gb|EDZ51925.1| tRNA modification GTPase TrmE [Bacillus cereus AH1134]
 gi|228589760|gb|EEK47638.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 10876]
 gi|228700610|gb|EEL53149.1| tRNA modification GTPase mnmE [Bacillus cereus Rock4-2]
 gi|228803962|gb|EEM50586.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 458

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +    I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|47568683|ref|ZP_00239380.1| tRNA modification GTPase TrmE [Bacillus cereus G9241]
 gi|228988713|ref|ZP_04148798.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|47554671|gb|EAL13025.1| tRNA modification GTPase TrmE [Bacillus cereus G9241]
 gi|228771025|gb|EEM19506.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 458

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +    I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVIELAEGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|206975796|ref|ZP_03236707.1| tRNA modification GTPase TrmE [Bacillus cereus H3081.97]
 gi|217962976|ref|YP_002341554.1| tRNA modification GTPase TrmE [Bacillus cereus AH187]
 gi|222098961|ref|YP_002533019.1| tRNA modification gtpase trme [Bacillus cereus Q1]
 gi|229142233|ref|ZP_04270757.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST26]
 gi|229199692|ref|ZP_04326335.1| tRNA modification GTPase mnmE [Bacillus cereus m1293]
 gi|206745890|gb|EDZ57286.1| tRNA modification GTPase TrmE [Bacillus cereus H3081.97]
 gi|217065834|gb|ACJ80084.1| tRNA modification GTPase TrmE [Bacillus cereus AH187]
 gi|221243020|gb|ACM15730.1| tRNA modification GTPase TrmE [Bacillus cereus Q1]
 gi|228583787|gb|EEK41962.1| tRNA modification GTPase mnmE [Bacillus cereus m1293]
 gi|228641251|gb|EEK97558.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST26]
          Length = 458

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +    I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|323705843|ref|ZP_08117415.1| tRNA modification GTPase TrmE [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534839|gb|EGB24618.1| tRNA modification GTPase TrmE [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 458

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 159/458 (34%), Positives = 249/458 (54%), Gaps = 26/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR-- 59
           +TI A+ST      ISIIR+SG    ++   I K K+       +  ++ Y F  D +  
Sbjct: 4   DTIAAISTPIGEGGISIIRISGNDAVKIASSIFKAKRNIDLNSVKSHTVHYGFIYDRKND 63

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I D+ L+ V  SP ++T ED  E + HGG      ILE L      RLA PGEF++RAF
Sbjct: 64  EIYDEVLVNVMKSPHTYTKEDVVEINCHGGYIPAKRILE-LVLRNGARLAEPGEFTKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++D+ +AE++ D+I S+T++  + ++  + G +     +  + L  + + I A +DF
Sbjct: 123 LNGRLDISQAEAVIDIIRSKTDLSNKYALMQLKGSVKDKITKIKNDLVALIAHIFALMDF 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            EE DV+ F+  E+++ I    +DI   +   + G IIR G    I+G  N GKSSL NA
Sbjct: 183 PEE-DVELFNDDELIDGINKSISDIDEILKTSEKGRIIREGLNTAIIGKPNVGKSSLLNA 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVTDIPGTTRD++   L ++G  + + DTAGIR+TD+IVE+ G++R+   ++ 
Sbjct: 242 LLNENRAIVTDIPGTTRDIIEEHLSIKGIPINLIDTAGIRQTDEIVERIGVERSREAIDK 301

Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTY-TEEYDHL-------IS 344
           ADLI+ + + +   E      +   +N   ++I  K DL S    +E D L       +S
Sbjct: 302 ADLIMFIFDSSRPLEKDDYDILKLIENKKVLYILNKIDLPSAIDIDEVDKLSGGKYVKLS 361

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-- 402
           SFT EGL+ L N + +I+          + ++ RH   L +    L ++ L   + GL  
Sbjct: 362 SFTKEGLDILENTVYNIVMVDGLSHDEFLLTNMRHKDALIKAKENL-LSCLRTIESGLTE 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D ++ +L  A   LG ITG    E L++ IF +FC+GK
Sbjct: 421 DFVSIDLNAAIDHLGLITGETANEDLINEIFERFCVGK 458


>gi|55821017|ref|YP_139459.1| tRNA modification GTPase TrmE [Streptococcus thermophilus LMG
           18311]
 gi|81560616|sp|Q5M4H3|MNME_STRT2 RecName: Full=tRNA modification GTPase mnmE
 gi|55737002|gb|AAV60644.1| thiophene and furan oxidation protein [Streptococcus thermophilus
           LMG 18311]
          Length = 456

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/458 (31%), Positives = 255/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI I+RLSG     +   + K K       S    +G    +
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDAIAIANKVFKGKN-LETVDSHTINYGHIVEN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ ++ V  +P++FT ED  E + HGG+AV N IL+ L +    R+A PGEF++RA
Sbjct: 62  NEIIDEVMVSVMRAPKTFTREDVVEVNTHGGVAVTNEILQLLIR-SGARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLI ++T+    +++  + G L +L      ++ +  + +E ++D
Sbjct: 121 FLNGRIDLTQAEAVMDLIRAKTDKAMTVAVSQLDGSLKNLINNTRQEILNTLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++  V       +  + + ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 181 YPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDD+VEK G++R+   +E
Sbjct: 241 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALE 300

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345
            ADL+LL+  +NS + ++          +N + I +  K+DL  +  TEE       IS 
Sbjct: 301 EADLVLLV--LNSSEPLTDQDRTLLDISQNSNRIILLNKTDLPQAIQTEELPEDLIPISV 358

Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              E ++++ ++I  +  +     +   +  S+ RH+  + + +  LE  +   E    +
Sbjct: 359 LKNENIDKIEDRINQLFFDNAGLVEKDATYLSNARHISLIEKALESLEAVNQGLELGMPV 418

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 DLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456


>gi|327403308|ref|YP_004344146.1| tRNA modification GTPase trmE [Fluviicola taffensis DSM 16823]
 gi|327318816|gb|AEA43308.1| tRNA modification GTPase trmE [Fluviicola taffensis DSM 16823]
          Length = 467

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 162/467 (34%), Positives = 243/467 (52%), Gaps = 36/467 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF----GLDGRIL 61
           +TI A+ST     AI++IRLSG     +   +  K   F    S    F     +DG +L
Sbjct: 5   KTICALSTAPGMGAIALIRLSGKDSIDILSRVAGKS--FENTPSHSAHFLRLKKVDGSVL 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ ++ VF    SFTGE++ E   HG + +   I+  L       LA PGEF+ RAF NG
Sbjct: 63  DEVVVTVFHEGHSFTGENTVEIACHGSLFIQQEIIN-LFLASGCELAKPGEFTMRAFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE+++DLI+SE+     ++M  M G  S+      +KL H  S +E +LDF+EE
Sbjct: 122 RMDLSQAEAVSDLIASESARSHEVAMNQMRGSFSNELKDLREKLIHFASLVELELDFAEE 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            DV+     E+L  +  +   +   I   +LG +++NG  + I+G  N GKS+L N L  
Sbjct: 182 -DVEFADRTELLALVTEVLAYVRKLIQSFELGNVLKNGVPVAIVGAPNTGKSTLLNQLLG 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE-GIKRTFLEVENAD 300
           +D AIV++I GTTRDV+   L+++G L ++ DTAGIRE      +  GI+R+  +++ A 
Sbjct: 241 EDRAIVSNIAGTTRDVIEETLNIDGILFRLIDTAGIREEAAEEIEALGIQRSLDKIKQAK 300

Query: 301 LILLLKEI---NSKKE--ISFPKNID---------------FIFIGTKSDLY-----STY 335
           ++L+L +    NS+ E  +S   N                 F+ IG K DL      S +
Sbjct: 301 IVLMLSDFSGENSQSEGHLSMDSNTTGQWADEQATIHSGAHFLVIGNKYDLRADQINSPW 360

Query: 336 TEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
             +   L IS+  G G+ EL   +   +   F     +I S+ RHL  L +T   LE A 
Sbjct: 361 EFQTPFLPISAKNGSGIPELKAWLSQQILGSFNTQSDTIVSNARHLDALLKTQDSLEKAK 420

Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              E +   D +A ++R A   LG ITG +  + LL  IFSKFCIGK
Sbjct: 421 WGLETNITADFVAMDIRQAMFWLGSITGQISEDDLLANIFSKFCIGK 467


>gi|317484428|ref|ZP_07943342.1| tRNA modification GTPase TrmE [Bilophila wadsworthia 3_1_6]
 gi|316924316|gb|EFV45488.1| tRNA modification GTPase TrmE [Bilophila wadsworthia 3_1_6]
          Length = 461

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 241/468 (51%), Gaps = 43/468 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKK---KPFP-RKASLRYFFGLDGR 59
           +TI A++T      I I+R+SGP    + E  F    K   KP+  R+  ++     +G 
Sbjct: 4   DTIAAIATAPGAGGIGIVRVSGPGALPILEKLFAPAGKGGYKPWILRRGRVQD---TEGN 60

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD  L +  P P++FTGED AEF  HGG  ++  +LE        RLA  GEF+RRAF 
Sbjct: 61  TLDDSLAVFMPGPKTFTGEDVAEFQCHGGPVLLAAVLEACL-CAGARLAERGEFTRRAFL 119

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++A++I++ ++   RL+   + G L    G   +++ H+R+ I   +DF 
Sbjct: 120 NGRMDLTQAEAVAEMIAAPSKEGARLAAAKLDGVLGQRIGDLRERVEHLRAQICLAVDFP 179

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EEE V+    +  L+ I  +K  ++S ++  +     R G  + + G  NAGKSSL NAL
Sbjct: 180 EEE-VECLPQEGFLSAIADVKAAVASLLAGFERTRCWREGVTVALAGPVNAGKSSLMNAL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +  A+VT+ PGTTRD L   + L G  V++ DTAG+RETD+  E +GI+     +E+A
Sbjct: 239 LGRQRAVVTEYPGTTRDFLEEPIQLAGLPVRLVDTAGLRETDNPAEAQGIQLGRSMIESA 298

Query: 300 DLILLLKEINSKKEISFPKNIDF---------IFIGTKSDLYSTYTEEYDH--------- 341
           D++LL+ +     E + P              I +  KSDL +     Y           
Sbjct: 299 DVVLLMVD---GTEGTTPDTWALLSELGPERTILVWNKSDLATPPPHWYGKEMNLSVKPA 355

Query: 342 ---LISSFTGEGLEELINKIKSI-LSNKFKKLP---FSIPS--HKRHLYHLSQTVRYLEM 392
              +IS+  GEGLE L   ++ + L+    + P    ++P+    R L  +   +  LE 
Sbjct: 356 AHAVISARKGEGLETLAEAVRELALARSQGQEPEPGEAVPNLRQARSLMEVLGELEALEQ 415

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L       D+ A  L  A+ +L +ITG    E++L+ IF+ FCIGK
Sbjct: 416 DVL--AGVPYDLCAVRLEGAASALAEITGLDTPEEVLNRIFASFCIGK 461


>gi|315168440|gb|EFU12457.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1341]
          Length = 465

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 149/463 (32%), Positives = 257/463 (55%), Gaps = 30/463 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LD 57
           E +TI A+ST     AISI+RLSG     +   + +   K   +  +    +G      +
Sbjct: 7   EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 66

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ +L V  +P++FT ED  E + HGGI VVN +L+ L +    R+A PGEF++RA
Sbjct: 67  DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMAEPGEFTKRA 125

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E ++D
Sbjct: 126 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNID 185

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 186 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGPPNVGKSSLLN 245

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   + 
Sbjct: 246 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 305

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342
           ++DLILL+  +N  +E++          K +  + +  K DL +     E   L      
Sbjct: 306 DSDLILLV--LNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363

Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             +S  +  GL++L  KI  +    +  +   +  S+ RH+  L Q    L+   +N  +
Sbjct: 364 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEV-INGIE 422

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|50914157|ref|YP_060129.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10394]
 gi|73919891|sp|Q5XCB7|MNME_STRP6 RecName: Full=tRNA modification GTPase mnmE
 gi|50903231|gb|AAT86946.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS10394]
          Length = 458

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 145/460 (31%), Positives = 261/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G  +D 
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY---DHL-ISS 345
           ++ +DL+LL+   + K        ++  ++ + I +  K+DL      E    D++ IS 
Sbjct: 301 LQESDLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360

Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK---DC 400
            T + +  + ++I  +  +     +   +  S+ RH+  + + V+ LE  ++N+      
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGLALGM 418

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|251800245|ref|YP_003014976.1| tRNA modification GTPase TrmE [Paenibacillus sp. JDR-2]
 gi|247547871|gb|ACT04890.1| tRNA modification GTPase TrmE [Paenibacillus sp. JDR-2]
          Length = 459

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 150/458 (32%), Positives = 242/458 (52%), Gaps = 25/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60
           +TI A+ST      I+IIR+SGP   +    I + +      A+    +G      +G  
Sbjct: 4   DTIAAISTAVGEGGIAIIRVSGPDAIEGTARIFRSRTDLRDAATHTVQYGHIIDPKNGEQ 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V   P SFT ED  E + HGG+  V  +L+++     +RLA PGEF++RAF N
Sbjct: 64  VEEVIVTVMRGPRSFTAEDVVEINAHGGVVAVKKVLDQVLLQDGMRLAEPGEFTKRAFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL++AE++ DLI S+++    ++ +   G LS         +  + + IE ++D+ E
Sbjct: 124 GRIDLMQAEAVIDLIRSKSDRAFSVARKQAEGTLSKRIKALRQTVIELLAHIEVNIDYPE 183

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             DV++ +S  +         +I   +     G+I+R G    I+G  N GKSSL N LA
Sbjct: 184 H-DVEDLTSAYIREQSGSALEEIGKLLKTANEGKILREGIMTAIVGRPNVGKSSLLNMLA 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDIPGTTRDV+   + L    +++ DTAGIRET+D+VE+ G++R+   +E AD
Sbjct: 243 QENKAIVTDIPGTTRDVIEEYVTLNHIPLRLLDTAGIRETNDVVERIGVERSHNALEEAD 302

Query: 301 LILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHLISS 345
           LIL +   N       +  +   K+   I I  KSDL S            EE    +S 
Sbjct: 303 LILFVLNNNEPIHEDDRALLEKVKDRQLILIINKSDLESKLEMAEIEALIDEERIVRMSV 362

Query: 346 FTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--L 402
              +GL+ L   I K     +      +  S+ RH+  L +  + L + +++  + G  +
Sbjct: 363 REEDGLDRLEKAISKLFFEGQLDSGDLTYVSNVRHISLLKRAQQSL-IDAIDASNAGIPI 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+I  ++R A  SLG+I G    + L+D IFS+FC+GK
Sbjct: 422 DLIQIDVRSAWESLGEILGDEVGDSLIDQIFSQFCLGK 459


>gi|306831214|ref|ZP_07464375.1| tRNA modification GTPase TrmE [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426780|gb|EFM29891.1| tRNA modification GTPase TrmE [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 457

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 261/469 (55%), Gaps = 42/469 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           + +E +TI A+ST     AI I+RLSG     + + + + K    + AS    +G  +D 
Sbjct: 2   ITNEFDTIAAISTPLGEGAIGIVRLSGTEALAIAQKVYRGKD-LNKVASHTINYGHIVDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               +LD+ ++ V  +P++FT E+  E + HGG+AV N IL  L      RLA PGEF++
Sbjct: 61  NTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEILR-LVLRQGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   
Sbjct: 240 LNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKA 299

Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342
           +E ADL+LL+  +NS + ++          K+ + I +  K+DL      E D L     
Sbjct: 300 LEEADLVLLV--LNSSEPLTNQDRALLELSKDSNRIILLNKTDLPEKI--EADQLPDDVI 355

Query: 343 -ISSFTGEG---LEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
            IS    +    +EE IN++      I+      L     S+ RH+  + + V+ L+  +
Sbjct: 356 RISVLKNQNIDVIEERINQLFFDNAGIVEKDATYL-----SNARHISLIEKAVQSLQ--A 408

Query: 395 LNEK-DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +NE  + G+  D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 409 VNEGLELGMPVDLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457


>gi|239618515|ref|YP_002941837.1| tRNA modification GTPase TrmE [Kosmotoga olearia TBF 19.5.1]
 gi|239507346|gb|ACR80833.1| tRNA modification GTPase TrmE [Kosmotoga olearia TBF 19.5.1]
          Length = 440

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 244/443 (55%), Gaps = 14/443 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           + I A++T    SA+ IIR SG   ++          P P +  L  F  ++G ++D+ +
Sbjct: 4   DPICAIATSPGISALGIIRCSGEGSWEKLLPFVNVTDPKPWRLYLTPF-TINGEMIDEVM 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +  + SP+S+TGED  E   HG   ++  IL+EL K+   R A PGEF++RA  NGK+DL
Sbjct: 63  IAFYKSPKSYTGEDMVELISHGSPLILRIILQELIKV-GFRQALPGEFTKRAVLNGKMDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AES+  L+S+ ++   + ++   SG LS    +  + L  + + +E +L++ +E +  
Sbjct: 122 IKAESIETLVSAHSKKALKAALSNYSGRLSQTINRIRETLLELLAKVEVELNYPDEIE-- 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  E++ ++    + +   I  G+ G +  NG K VI G +N GKS+L NAL ++D A
Sbjct: 180 -GSDDEIIRELEKTLSRVKKLIRHGENGIVAVNGVKTVIAGRTNVGKSTLLNALLRRDRA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDIPGTTRD +  D+ + G   ++ DTAGIRE+ D VE+ GI+R+  +++ ADL+L +
Sbjct: 239 IVTDIPGTTRDTIEEDISINGIYFRLVDTAGIRESSDKVERIGIERSLKQIKEADLVLFM 298

Query: 306 KE-INSKKEISFPKNI--DF---IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
            + I  + ++   + +  +F   I IG K D+     + +D  IS+ TG G+++L N + 
Sbjct: 299 VDLIEPENDLELYEKLRKEFRHSILIGNKLDMVEKCPDGFDVCISAKTGRGIDKLENLMV 358

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLG 417
               +  +  P  +   +R L  + ++V  +E   L     G+  D++   L+       
Sbjct: 359 ERTQDITELYPDEVFVTERQLALVQRSVEMIE-EILEALKSGITPDVVGSYLQQIIFIYD 417

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           ++TG    E LLD IF  FC+GK
Sbjct: 418 ELTGRYSAEDLLDKIFGNFCVGK 440


>gi|166032899|ref|ZP_02235728.1| hypothetical protein DORFOR_02620 [Dorea formicigenerans ATCC
           27755]
 gi|166027256|gb|EDR46013.1| hypothetical protein DORFOR_02620 [Dorea formicigenerans ATCC
           27755]
          Length = 470

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 166/479 (34%), Positives = 253/479 (52%), Gaps = 48/479 (10%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKAS--LRYFFGL 56
           M +E  TI A+ST    S I I+R+SG    ++ E I K K  K   ++ +  + Y + +
Sbjct: 1   MRNESGTIAAISTAMSNSGIGIVRMSGEEAVEIAERIYKGKNEKKLSKQPTHTIHYGYIV 60

Query: 57  DGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           DG   +D+ L+++   P S+TGED+ E + HGG+ VV  ILE + K    R A+PGEF++
Sbjct: 61  DGEDTIDEVLVMLMRGPHSYTGEDTVEINCHGGVYVVRRILETVIKY-GARPADPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NGK+DL +AE++ DLISS+ E   R S+  + G +     +  +++ +  +FIE  
Sbjct: 120 RAFLNGKMDLSQAEAVGDLISSKNEYALRSSVSQLKGNIKKEIQKIREEILYHTAFIETA 179

Query: 176 LDFSEEEDVQNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           LD  E   V  +  K   V+ D +     +   +S    G +I+ G K VI+G  NAGKS
Sbjct: 180 LDDPEHISVDGYGEKLEVVVEDHM---KSLKHLLSTCDDGRMIKEGIKTVIVGKPNAGKS 236

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N L  ++ AIVT+I GTTRDVL   ++L+G  + I DTAGIR+T+D+VEK G+ R  
Sbjct: 237 SLLNVLLGEERAIVTEIAGTTRDVLEEHMNLQGISLNIVDTAGIRDTEDVVEKIGVDRAK 296

Query: 294 LEVENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338
              ++ADLI+               +++ I  +K I      D   I  K ++   Y+ E
Sbjct: 297 ENAKDADLIMYVIDASAPLDENDDDIMRMIYGRKAIILLNKADLNTILGKDEIKKKYS-E 355

Query: 339 YDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLS 384
            + L           IS+  G+G+ EL   +K +      K+ F+     ++ RH   L+
Sbjct: 356 INQLESCDIFPAIIEISAKNGQGISELEQTLKEMFFE--GKISFNDEIYITNVRHKTALN 413

Query: 385 QTVRYLEMASLNEK-DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               Y  +  + E  D G+  D  + +L  A   LG ITG    E L++ IFSKFC+GK
Sbjct: 414 NA--YEALKKVKESIDMGMPEDFYSIDLMDAYEELGSITGETIGEDLVNEIFSKFCMGK 470


>gi|52145292|ref|YP_086749.1| tRNA modification GTPase TrmE [Bacillus cereus E33L]
 gi|196041935|ref|ZP_03109222.1| tRNA modification GTPase TrmE [Bacillus cereus NVH0597-99]
 gi|225867465|ref|YP_002752843.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB102]
 gi|229187713|ref|ZP_04314849.1| tRNA modification GTPase mnmE [Bacillus cereus BGSC 6E1]
 gi|81685202|sp|Q630B8|MNME_BACCZ RecName: Full=tRNA modification GTPase mnmE
 gi|51978761|gb|AAU20311.1| tRNA modification GTPase [Bacillus cereus E33L]
 gi|196027190|gb|EDX65810.1| tRNA modification GTPase TrmE [Bacillus cereus NVH0597-99]
 gi|225785903|gb|ACO26120.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB102]
 gi|228595781|gb|EEK53465.1| tRNA modification GTPase mnmE [Bacillus cereus BGSC 6E1]
          Length = 458

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +    I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEELFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|24379659|ref|NP_721614.1| tRNA modification GTPase TrmE [Streptococcus mutans UA159]
 gi|290580346|ref|YP_003484738.1| putative thiophene and furan degradation protein [Streptococcus
           mutans NN2025]
 gi|32171828|sp|Q8DTT8|MNME_STRMU RecName: Full=tRNA modification GTPase mnmE
 gi|24377614|gb|AAN58920.1|AE014960_1 putative thiophene and furan degradation protein [Streptococcus
           mutans UA159]
 gi|254997245|dbj|BAH87846.1| putative thiophene and furan degradation protein [Streptococcus
           mutans NN2025]
          Length = 455

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/464 (31%), Positives = 259/464 (55%), Gaps = 34/464 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDG 58
           + +E +TI A++T     AI I+R+SG     + + I K K     P           +G
Sbjct: 2   ITNEFDTITAIATPLGEGAIGIVRISGSKALAIIKKIFKGKNLDDVPSHTINYGHIVENG 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ ++ V  +P++FT ED  E + HGG+AV N IL+ L      R+A+PGEF++RAF
Sbjct: 62  AIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQ-LVLRSGARMADPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ DLI ++T+    ++++ + G LS+L      ++ +  + +E ++D+
Sbjct: 121 LNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLAQVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  ++  +       +  +++ +   + G+I+R G    I+G  N GKSSL N 
Sbjct: 181 PEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNVGKSSLLNN 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   +E 
Sbjct: 241 LLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVERSKKALEE 300

Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           ADL+LL+  +NS ++++          +N + + +  K+DL      E D L      IS
Sbjct: 301 ADLVLLV--LNSAEKLTDQDRTLLEISQNSNRLILLNKTDLPEQI--ETDQLPEDCIKIS 356

Query: 345 SFTGEG---LEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
               +    +EE INK+     +I+      L     S+ RH+  + + ++ L+  +   
Sbjct: 357 VIKNQNIDVIEERINKLFFDNAAIVEKDATYL-----SNARHISLIEKALKSLQAVNDGL 411

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E    +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 412 ELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455


>gi|330443937|ref|YP_004376923.1| tRNA modification GTPase TrmE [Chlamydophila pecorum E58]
 gi|328807047|gb|AEB41220.1| tRNA modification GTPase TrmE [Chlamydophila pecorum E58]
          Length = 443

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 155/447 (34%), Positives = 234/447 (52%), Gaps = 20/447 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGRILDKG 64
           +TI A++T     +I+++RLSGP    +   +  K     P            G I+D+ 
Sbjct: 5   DTIAAIATPPGEGSIAVVRLSGPQAIAIANKVFSKNIVDLPTHTVHLGTVSSQGVIIDQV 64

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LLI+  +P SFTGED  E   HGG      ILE L      R A PGEFS+RAF NGKID
Sbjct: 65  LLIIMRAPRSFTGEDVIEIQCHGGYFSCTQILEALLN-EGARGALPGEFSQRAFLNGKID 123

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++AE++ +LI+S+      ++   + G  S    + +D +    +FIE   DF EEE  
Sbjct: 124 LIQAEAIQNLIASDNLDAYHIAQGHLQGRFSQKIQEVVDIIFEALAFIEVLADFPEEEQP 183

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                +  +   L +   +S  +     G+ +  G  I++ G  N GKSSL NAL +K+ 
Sbjct: 184 SLEIPESNIQKALAM---VSEFLDSFDEGQRLAQGTSIILAGEPNVGKSSLLNALTQKNR 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRD+L     L+G  +++ DTAG R+T+D++E+EGI R  + +E+A  IL 
Sbjct: 241 AIVTDIPGTTRDILEESWTLQGKRIRLIDTAGQRDTNDLIEQEGINRARMAMESAQGILW 300

Query: 305 L----KEINSKKEISFPKNIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEGLEELINK 357
           +    +  N   EI F K+   I+   K DL +     T   +  IS+ TGEG+ EL   
Sbjct: 301 VMDATRPQNPLPEILFSKSTFLIW--NKIDLAAPKKFNTNLPELAISTKTGEGILELKTA 358

Query: 358 IKSIL----SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           ++  L    S K  K+      H+  L  +   ++  +   L+++    + IA++LR A 
Sbjct: 359 LQQWLQKESSGKSSKVFLVSSRHQSILQTIQSNLKAAQDKLLSQQPP--EFIAQDLRHAL 416

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++G ++G    E +L  IFSKFCIGK
Sbjct: 417 YAIGNLSGSEVTEAVLREIFSKFCIGK 443


>gi|319940690|ref|ZP_08015032.1| tRNA modification GTPase mnmE [Sutterella wadsworthensis 3_1_45B]
 gi|319805841|gb|EFW02608.1| tRNA modification GTPase mnmE [Sutterella wadsworthensis 3_1_45B]
          Length = 462

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 152/462 (32%), Positives = 242/462 (52%), Gaps = 27/462 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQ--VCEFICKKKKPFPRKASLRYFFGLDGRI 60
           ++K  I A++T      I +IRLS  +     +   +  ++   PR+  L  F   +  +
Sbjct: 4   NDKTPIIAIATAPGRGGIGVIRLSFEADLADPILAALFPQRSIEPRRVQLLPFLDENNAL 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE-LAKMP--NLRLANPGEFSRRA 117
           LD  +++ F +P S+TGE   E   HGG  ++  IL   L K+    LR+A PGEF++RA
Sbjct: 64  LDHAVVLYFSAPASYTGESVLEIQAHGGPVLLKLILRAALTKLAFCGLRIAEPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE+++ LI + +E     +   +SG+ S       D L   R+  EA LD
Sbjct: 124 FLNGRMDLTQAEAVSGLIDAASEAAAHAAARSLSGDFSREVHAAGDLLDEARALSEASLD 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EE D+++   K++       +  +   ++  + G ++ +G  + ++G  N GKSSL N
Sbjct: 184 FPEE-DLEDLKEKQIFTRAREAQIKLEGLLANARRGVVLADGITVALVGAPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           ALA  +VAIVT+I GTTRD +      +G  ++I DTAG+RET+DIVE++GI+RT   + 
Sbjct: 243 ALAGDEVAIVTEIAGTTRDRIEHWTAFDGIPLRIVDTAGMRETNDIVEQKGIERTLKAIS 302

Query: 298 NADLILLLKEINSK-----------KEISFPKNIDFIFIGTKSDLYS-----TYTEEYDH 341
            AD++L L + + +           +E + P     + +  K D  S      Y ++   
Sbjct: 303 EADIVLHLVDASGRIPDDEALLTRVREYARP-GTPLLIVANKIDSISLERRNEYCDDASI 361

Query: 342 L-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398
           + IS+ T EGLE L  ++   +          + + +RHL  L     +L  A       
Sbjct: 362 VPISAKTHEGLEALKARVLEYVDMAGGTEGVFL-ARERHLECLRMASAHLSTALEMSTSP 420

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            C ++I AE LRLA  +LG++ G  D E LL IIFS+FCIGK
Sbjct: 421 FCMMEIFAEELRLAGRALGELLGETDAEDLLGIIFSRFCIGK 462


>gi|30265502|ref|NP_847879.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Ames]
 gi|49188321|ref|YP_031574.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Sterne]
 gi|49480475|ref|YP_039474.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|50196974|ref|YP_052661.1| tRNA modification GTPase TrmE [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65317465|ref|ZP_00390424.1| COG0486: Predicted GTPase [Bacillus anthracis str. A2012]
 gi|165873022|ref|ZP_02217643.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0488]
 gi|167635055|ref|ZP_02393372.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0442]
 gi|167641744|ref|ZP_02399987.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0193]
 gi|170689483|ref|ZP_02880673.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0465]
 gi|170707531|ref|ZP_02897984.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0389]
 gi|177655270|ref|ZP_02936824.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0174]
 gi|190569290|ref|ZP_03022184.1| tRNA modification GTPase TrmE [Bacillus anthracis Tsiankovskii-I]
 gi|196036118|ref|ZP_03103518.1| tRNA modification GTPase TrmE [Bacillus cereus W]
 gi|196045402|ref|ZP_03112633.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB108]
 gi|218906676|ref|YP_002454510.1| tRNA modification GTPase TrmE [Bacillus cereus AH820]
 gi|227818253|ref|YP_002818262.1| tRNA modification GTPase TrmE [Bacillus anthracis str. CDC 684]
 gi|228918096|ref|ZP_04081624.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228930490|ref|ZP_04093490.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228936764|ref|ZP_04099555.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228949206|ref|ZP_04111474.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229094595|ref|ZP_04225662.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-42]
 gi|229124987|ref|ZP_04254161.1| tRNA modification GTPase mnmE [Bacillus cereus 95/8201]
 gi|229600776|ref|YP_002869693.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0248]
 gi|254687075|ref|ZP_05150933.1| tRNA modification GTPase TrmE [Bacillus anthracis str. CNEVA-9066]
 gi|254724142|ref|ZP_05185927.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A1055]
 gi|254735159|ref|ZP_05192869.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742132|ref|ZP_05199819.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Kruger B]
 gi|254755958|ref|ZP_05207990.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Vollum]
 gi|254761362|ref|ZP_05213384.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Australia
           94]
 gi|301056958|ref|YP_003795169.1| tRNA modification GTPase TrmE [Bacillus anthracis CI]
 gi|46577421|sp|Q81JD9|MNME_BACAN RecName: Full=tRNA modification GTPase mnmE
 gi|81394076|sp|Q6HAF2|MNME_BACHK RecName: Full=tRNA modification GTPase mnmE
 gi|30260180|gb|AAP29365.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Ames]
 gi|49182248|gb|AAT57624.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Sterne]
 gi|49332031|gb|AAT62677.1| tRNA modification GTPase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|50083036|gb|AAT70169.1| tRNA modification GTPase TrmE [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164711234|gb|EDR16790.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0488]
 gi|167510298|gb|EDR85701.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0193]
 gi|167529529|gb|EDR92279.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0442]
 gi|170127527|gb|EDS96401.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0389]
 gi|170666585|gb|EDT17358.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0465]
 gi|172080197|gb|EDT65289.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0174]
 gi|190559597|gb|EDV13588.1| tRNA modification GTPase TrmE [Bacillus anthracis Tsiankovskii-I]
 gi|195991285|gb|EDX55253.1| tRNA modification GTPase TrmE [Bacillus cereus W]
 gi|196023609|gb|EDX62285.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB108]
 gi|218538645|gb|ACK91043.1| tRNA modification GTPase TrmE [Bacillus cereus AH820]
 gi|227004482|gb|ACP14225.1| tRNA modification GTPase TrmE [Bacillus anthracis str. CDC 684]
 gi|228658488|gb|EEL14154.1| tRNA modification GTPase mnmE [Bacillus cereus 95/8201]
 gi|228688842|gb|EEL42673.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-42]
 gi|228810489|gb|EEM56842.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228822973|gb|EEM68814.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228829209|gb|EEM74846.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228841576|gb|EEM86692.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229265184|gb|ACQ46821.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0248]
 gi|300379127|gb|ADK08031.1| tRNA modification GTPase TrmE [Bacillus cereus biovar anthracis
           str. CI]
          Length = 458

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +    I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLVVVNYSETLTNEDEELFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|298209078|ref|YP_003717257.1| putative tRNA modification GTPase [Croceibacter atlanticus
           HTCC2559]
 gi|83849005|gb|EAP86874.1| putative tRNA modification GTPase [Croceibacter atlanticus
           HTCC2559]
          Length = 469

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 160/472 (33%), Positives = 249/472 (52%), Gaps = 44/472 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGRI 60
           +TI A++T +   AI+IIR+SG    ++    F  K  K      S     G    + +I
Sbjct: 5   DTIVALATASGAGAIAIIRVSGKDAIEIVNPLFSAKSGKQLKDVNSHTIHLGDVKDNAKI 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ VF   +S+TGE + E   HG   +   I++ L +    R ANPGEF+ RAF N
Sbjct: 65  IDEALVSVFKGTKSYTGEPTVEISCHGSHYIQQEIIQLLLR-KGCRAANPGEFTLRAFIN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI+S+ E   +L+++ M G  S+   +  ++L +  S IE +LDF+E
Sbjct: 124 GKMDLSQAEAVADLIASDNEASHQLALQQMRGGFSTEIAKLREELLNFASLIELELDFAE 183

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV+  +  E  N +  ++  +   I     G +I+NG  I I+G  N GKS+L NAL 
Sbjct: 184 E-DVEFANRDEFQNLVTRIQTVLKRLIDSFATGNVIKNGIPIAIVGEPNVGKSTLLNALL 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV+DI GTTRD +  ++ + G   +  DTAGIRET D++E  GIK+TF ++E + 
Sbjct: 243 NEERAIVSDIAGTTRDTIEDEISIGGIGFRFIDTAGIRETKDVIEGLGIKKTFEKIEKSQ 302

Query: 301 LILLLKEI-----------NSKKEIS-----FPK--------NIDFIFIGTKSDLYSTYT 336
           + + L +            N K E+      FP+         ID +      +L     
Sbjct: 303 VTVYLFDASLIKNDAIRIKNLKVEVEKIKNRFPQKPLLVIANKIDALLDSEIQNLIDNLK 362

Query: 337 EEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
               HL  IS+ TG G+EEL   +   ++    K   +I ++ RH   L   ++ LE   
Sbjct: 363 PHTTHLLTISAKTGLGIEELQTTLLDFVNTGALKNNDTIITNSRHYDAL---LKALE--E 417

Query: 395 LNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +N+   GL      D++A ++R A    G+ITG V  ++LL  IF+ FCIGK
Sbjct: 418 INKVQDGLNANLPSDLMAIDIRQALFHFGEITGQVTNDELLGNIFANFCIGK 469


>gi|300118814|ref|ZP_07056534.1| tRNA modification GTPase TrmE [Bacillus cereus SJ1]
 gi|298723782|gb|EFI64504.1| tRNA modification GTPase TrmE [Bacillus cereus SJ1]
          Length = 458

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +    I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ +  +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMASIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL  +   E        + +I++
Sbjct: 300 ADLVLVVVNYSETLTNEDEELFRAVQGKDFIVIVNKTDLPQSIDMERVIELAAGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSTDVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|29840683|ref|NP_829789.1| tRNA modification GTPase TrmE [Chlamydophila caviae GPIC]
 gi|33301705|sp|Q821L2|MNME_CHLCV RecName: Full=tRNA modification GTPase mnmE
 gi|29835033|gb|AAP05667.1| thiophene and furan oxidation (thdF) [Chlamydophila caviae GPIC]
          Length = 443

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 240/456 (52%), Gaps = 34/456 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           + +TI A++T     +I+I+R+SGP   Q+ + I       P  AS     G+     R 
Sbjct: 3   KNDTIAAIATPPGEGSIAIVRISGPEAIQITDKIFSGS--VPSFASHTAHLGIVNHKDRQ 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL++  +P SFTGED  E   HGG    + ILE L      R A PGEFS+RAF N
Sbjct: 61  IDQVLLLIMRAPRSFTGEDVIELQCHGGYFSCSQILEALVS-EGARPALPGEFSQRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL++AE++ ++I+++      ++     G  S         +    +FIE   DF E
Sbjct: 120 GKIDLIQAEAIQNIIAADNLDAFFIAQNHFQGHFSKKIQLISSLIVESLAFIEVLADFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE       K+ LN+ + +  D+ S   +G+    +  G  IV+ GH N GKSSL NAL 
Sbjct: 180 EEQPDMDVPKQRLNEAMLIIEDLISSFDEGQR---LAQGTSIVLAGHPNVGKSSLLNALT 236

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            K+ AIVTDIPGTTRD+L  +  L+G  +++ D+AG RETD++VE+EGI+R    +E ++
Sbjct: 237 NKNRAIVTDIPGTTRDILEENWTLQGKRIRLIDSAGQRETDNLVEQEGIERAISAMEQSE 296

Query: 301 LILLLKEIN----SKKEISFPKNIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEGLEE 353
            IL + +      S  EI F K    + +  KSDL S     T      IS+ TGEG+ E
Sbjct: 297 GILWVMDATQPPPSLPEILFQK--PSLLLWNKSDLASPPQLDTSLPQLAISAKTGEGIFE 354

Query: 354 LINKIKSILSN----KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-----DI 404
           L   I+  +      K  K+ F + S  RH   L Q   YL    L+ K+  L     ++
Sbjct: 355 LKQFIQKWMQQQQLGKNAKV-FLVSS--RHHTILQQMRSYL----LSAKEGLLAQLPPEL 407

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           IA  LR A  + G ++G    E +L  IFS+FCIGK
Sbjct: 408 IALELRQALQATGNLSGSEVNETILGEIFSRFCIGK 443


>gi|228911324|ref|ZP_04075128.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 200]
 gi|228848342|gb|EEM93192.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 200]
          Length = 458

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 253/459 (55%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +  + I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFHAIQGKDFIVIVNKTDLPQAIDMERVTKLAAGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGQTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|211828027|gb|AAH08924.3| GTPBP3 protein [Homo sapiens]
          Length = 349

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 201/357 (56%), Gaps = 17/357 (4%)

Query: 93  NGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG 152
           +G+L+ L  +P LR A  GEF+RRAF NGK++L E E LADLI +ETE QRR ++  + G
Sbjct: 1   SGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEGLADLIHAETEAQRRQALRQLDG 60

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212
           EL  L   W + LT   + +EA +DF E+++++    ++   ++  L+  + +H+   + 
Sbjct: 61  ELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLEQADIEVRALQVALGAHLRDARR 120

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G+ +R+G  +V+ G  NAGKSSL N L++K V+IV+  PGTTRDVL   +DL G+ V +S
Sbjct: 121 GQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLS 180

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENAD-LILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
           DTAG+RE    VE+EG++R     E+ + L  ++  + ++      + +  +    KSDL
Sbjct: 181 DTAGLREGVGPVEQEGVRRAR---ESCNFLATVVASVGAQSPSDSSQRLLLVL--NKSDL 235

Query: 332 YSTYTEEYDH------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHL 383
            S              L+S  TGEGL+ L+  ++  L+          P  +  RH +HL
Sbjct: 236 LSPEGPGPGPDLPPHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHL 295

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +  L       KD  L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 296 QGCLDALGHYK-QSKD--LALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 349


>gi|328946229|gb|EGG40373.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK1087]
          Length = 479

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 148/461 (32%), Positives = 263/461 (57%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 24  ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLNKVESHTLNYGHIVDPQ 83

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 84  NQEILDEVMLGAMHSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 142

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 143 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 202

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 203 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 262

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 263 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 322

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           + ADL+LL+   +       ++ +   ++ + I +  K+DL      E D L      IS
Sbjct: 323 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDLLPTDVIKIS 380

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCG 401
               + ++++  +I  +   +    +   +  S+ RH+  + + +  L+  ++N+  D G
Sbjct: 381 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQ--AVNQGLDMG 438

Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 439 MPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 479


>gi|189467536|ref|ZP_03016321.1| hypothetical protein BACINT_03926 [Bacteroides intestinalis DSM
           17393]
 gi|189435800|gb|EDV04785.1| hypothetical protein BACINT_03926 [Bacteroides intestinalis DSM
           17393]
          Length = 466

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 158/467 (33%), Positives = 245/467 (52%), Gaps = 35/467 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FG--LDGR 59
           ++TI A++T A   AI  IR+SG    ++   I    K     A  + +   FG   DG 
Sbjct: 4   QDTICAIAT-AQGGAIGSIRVSGADAIRITSHIFTPAKSGKALADCKPYTLTFGKIHDGE 62

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ L+ +F +P S+TGEDS E   HG   ++  +L+ L K    RLA PGE+++RAF
Sbjct: 63  EIIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVLQLLIKH-GCRLAGPGEYTQRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S    +  ++L H  S IE +LDF
Sbjct: 122 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTELRNQLLHFTSLIELELDF 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+ E+++     E+      ++  IS  +    +G  I+NG  + I+G +NAGKS+L N 
Sbjct: 182 SDHEELEFADRTELYRLADHIEGVISRLVHSFSVGNAIKNGVPVAIIGETNAGKSTLLNV 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRDV+    ++ G   +  DTAGIRET+D +E  GI+RTF ++E 
Sbjct: 242 LLNEDKAIVSDIHGTTRDVIEDTTNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLEQ 301

Query: 299 ADLILLL-------KEINSKKEISFPK--NIDFIFIGTKSDLYST-YTEEYDHLISSFTG 348
           A+++L +        ++N       P+      I +  KSDL  T +++E     SS   
Sbjct: 302 AEIVLWMIDATDATSQMNQLSGQILPRLERKHLILVFNKSDLSGTAHSDEVLSAASSIIP 361

Query: 349 EGLEELINKIKSILSNKFKK-------LPF-----SIPSHKRH---LYHLSQTVRYLEMA 393
           +     I+  K   ++  +K       LP       I ++ RH   L H  + +R ++  
Sbjct: 362 DAECIFISAKKRQNTDVLQKKLIAAANLPTITQNDVIVTNARHYEALTHALEAIRRVQQG 421

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             N  +   D +A+++R     L  I G V  + +L  IF  FCIGK
Sbjct: 422 LAN--NLSGDFVAQDIRECIFHLSDIAGEVTNDMVLQNIFQHFCIGK 466


>gi|86141545|ref|ZP_01060091.1| tRNA modification GTPase [Leeuwenhoekiella blandensis MED217]
 gi|85832104|gb|EAQ50559.1| tRNA modification GTPase [Leeuwenhoekiella blandensis MED217]
          Length = 471

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 161/474 (33%), Positives = 248/474 (52%), Gaps = 44/474 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDG-R 59
           ++TI A++T     AI++IR+SG     +    F  K  K    + S     G  +DG R
Sbjct: 4   QDTIAALATAPGAGAIAVIRVSGAEALAIVSDLFKAKSGKKLIDQDSHTLHLGNIVDGSR 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ILD+ L+ +F    S+TGE + E   HG   +   IL+ L +    R A  GEF+ RAF 
Sbjct: 64  ILDEALVSIFKGKRSYTGEPTVEISCHGSSYIQQEILQLLFR-NGCRAAKAGEFTLRAFI 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S+     +++M+ M G  S+   Q   +L +  S IE +LDF+
Sbjct: 123 NGKMDLSQAEAVADLIASDNAGAHQIAMQQMRGGFSNEIAQLRQELLNFASLIELELDFA 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE DV+  + +E  N I  +   +   I     G +I+NG  + I+G  N GKS+L NAL
Sbjct: 183 EE-DVEFANREEFQNLITKITRVLKRLIDSFATGNVIKNGIPVAIVGEPNVGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DI GTTRD +  ++ + G   +  DTAGIRET D++E  GIK+TF ++  A
Sbjct: 242 LNEERAIVSDIAGTTRDTIEDEISIGGIGFRFIDTAGIRETVDVIEGLGIKKTFEKIAQA 301

Query: 300 DLILLLKEINSKK----------EIS-----FPKNIDFIFIGTKSDLYSTYTEEYDH--- 341
            ++L L  INS+K          EI      FP     + +  K D  S   +E  +   
Sbjct: 302 QVVLYL--INSEKFKDQAELFTVEIQKIRNRFPDK-PLVLVANKIDHLSETEQESINKQL 358

Query: 342 -------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
                        LIS+ TG G+E L  ++   ++    +   ++ ++ RH   L + + 
Sbjct: 359 AALLSEGNKSAVLLISAKTGTGVEALKEQLLQFVNTGALRNNETLVTNSRHYDALLKALE 418

Query: 389 YLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +E   +   D GL  D++A ++R A    G+ITG V  ++LL  IF+ FCIGK
Sbjct: 419 EIEKVQMG-IDAGLSGDLLAIDIREALYHFGEITGQVTNDELLGNIFANFCIGK 471


>gi|17507259|ref|NP_493573.1| hypothetical protein F39B2.7 [Caenorhabditis elegans]
 gi|3876919|emb|CAB07393.1| C. elegans protein F39B2.7, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 439

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 146/456 (32%), Positives = 237/456 (51%), Gaps = 41/456 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+S+G LPSAI++ R+SG     V   + ++K   P+       +  + +I+D+ + 
Sbjct: 3   TIFALSSGTLPSAIAMFRVSGSQSLPVLRQLSRRKVWKPKTMKYTKLYDSESKIIDEAMA 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           +  P P++FTGED+AEF +HG  AV       LA + N+R A  GEF+RRAF NGK+ + 
Sbjct: 63  VYLPGPKTFTGEDTAEFFLHGSQAVAVKFASCLAGIQNVREAKRGEFTRRAFHNGKLSIS 122

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           E   +  LI S TE +R  +   M G + ++  +   +L  I S +   +DF E     N
Sbjct: 123 EVRGIDRLIKSRTEKERNAAFGQMRGGVRAI--EIRKQLIQILSKLFVIIDFGEH---VN 177

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              +E   D+  + ++++  I      E  + G  IV+ G  N+GKSS+ N LA  DVAI
Sbjct: 178 LELREAQQDVSEILHELNRMIKAWDGAERAQRGLDIVLYGRPNSGKSSILNQLAHDDVAI 237

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILL- 304
           V+ IPGTTRD L   + + G   +++DTAG+R+ T+D++E EGI+R    +++AD+I + 
Sbjct: 238 VSSIPGTTRDSLETIIQINGVRCRLTDTAGVRQKTNDVIEAEGIRRAQKRIQSADIICVV 297

Query: 305 ----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG------ 348
                     ++ I +  E+   +    I    KSDL    + +Y  L S+FT       
Sbjct: 298 VDPQFTSDDDVESILNDVEVMRNREARVIIAKNKSDL----SLKYPKLPSNFTTVSTNAT 353

Query: 349 --EGLEELINKIKSILSNKFKKLPFSIPSH--KRHLYHLSQTVRYLEMASLNEKDCGLDI 404
              G ++L N +  I+ +   +  + + +   +R  + L   V   + A          I
Sbjct: 354 TDTGCKQLQNCLGEIVDDLCPEASYLLDADLLRRCSFELESAVTCNDAA----------I 403

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +L +A   +G++T  +  E +LD IFSKFCIGK
Sbjct: 404 MCSHLEVALEQIGELTEGIVTESVLDGIFSKFCIGK 439


>gi|325687543|gb|EGD29564.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK72]
 gi|327474426|gb|EGF19832.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK408]
          Length = 457

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 258/459 (56%), Gaps = 22/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLNKVESHTLNYGHIIDPQ 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ L      R+A PGEF++R
Sbjct: 62  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LVIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGLPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           + ADL+LL+   +       ++ +   K+ + I +  K+DL      E D L      IS
Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISKDSNRIVLLNKTDLEEKI--ELDLLPTDVIKIS 358

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
               + ++++  +I  +   +    +   +  S+ RH+  + + +  L+  +   E    
Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|317496611|ref|ZP_07954958.1| tRNA modification GTPase TrmE [Gemella moribillum M424]
 gi|316913276|gb|EFV34775.1| tRNA modification GTPase TrmE [Gemella moribillum M424]
          Length = 460

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 155/469 (33%), Positives = 257/469 (54%), Gaps = 45/469 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRYFFGLDGRI- 60
           ETI A+ST     AI I+RLSG   F + + I +  K    ++    ++ Y   +D +  
Sbjct: 3   ETICAISTALGEGAIGIVRLSGDEAFSIADKIVRLPKGRTVESLPTHTINYANIIDPKTE 62

Query: 61  --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +++ +L+    P ++T ED  E + HGGI  +  +L  L      R+A PGEF++RAF
Sbjct: 63  EKIEEIMLVKMVGPRTYTTEDVVEINCHGGIITIQKVLA-LCLEYGARMAEPGEFTKRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++   M G LS+L  +   ++  I + +E ++D+
Sbjct: 122 LNGRIDLTQAEAVIDFIKSKTDEASQIANNQMQGRLSTLIKRLRAEILDILAVVEVNIDY 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +D++  ++K +L     +KN + + +   K G+II+ G    I+G  N GKSSL N 
Sbjct: 182 PEYDDLEIETTKTILEKSTSIKNSLEALLETSKQGKIIKEGINTAIIGRPNVGKSSLLNN 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDI GTTRDVL   ++++G  +K+ DTAGIRET+D+VEK G++R+   +E 
Sbjct: 242 LLQENKAIVTDIAGTTRDVLEEHVNIKGVPIKLIDTAGIRETEDVVEKIGVERSKEALEK 301

Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEE------YDHLI- 343
           ADL+L L  +NS +E++          +    I I  K DL +    E      Y+H I 
Sbjct: 302 ADLVLFL--LNSSEELTDDDRELLKLTEGKTTIIILNKLDLETKIDIEEIEKLTYNHPII 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMA--SLNE 397
             S  T +G++EL   I+ +         F   +  +   +LS T  +  ++ A  SLNE
Sbjct: 360 KTSMTTYKGIDELEKNIRDLF--------FKGAARPKDATYLSNTRQINLIQQALVSLNE 411

Query: 398 ----KDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                + GL  D++  +   A   LG++ G    ++L++ +FS+FC+GK
Sbjct: 412 AIKAAEMGLEVDMVLIDYTNAFNLLGEVIGENSGDELINELFSRFCLGK 460


>gi|90961107|ref|YP_535023.1| tRNA modification GTPase TrmE [Lactobacillus salivarius UCC118]
 gi|227892406|ref|ZP_04010211.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ATCC 11741]
 gi|122449446|sp|Q1WVH7|MNME_LACS1 RecName: Full=tRNA modification GTPase mnmE
 gi|90820301|gb|ABD98940.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Lactobacillus salivarius UCC118]
 gi|227865813|gb|EEJ73234.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ATCC 11741]
          Length = 464

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 155/462 (33%), Positives = 252/462 (54%), Gaps = 30/462 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGRI- 60
           E +TI A+ST     AISI+RLSG    ++   + K K  +  P   ++ Y   ++ +  
Sbjct: 8   EFDTIAAISTPPGEGAISIVRLSGEDAVKIANKVFKGKNLEKVPTH-TINYGHIVNPKTN 66

Query: 61  --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             LD+ ++ V  +P +FT ED  E + HGGI   N IL+ L      RLA PGEF++RAF
Sbjct: 67  EELDEVMVSVMLAPRTFTREDVIEINCHGGIVPTNQILQLLLS-NGARLAEPGEFTKRAF 125

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            +G+IDL +AES+ DLI ++T+   ++++  + G LS L       +  + + +E ++D+
Sbjct: 126 LHGRIDLTQAESVMDLIRAKTDRSMKVALNQLDGNLSHLIRNLRQDILDVLAQVEVNIDY 185

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  ++K +    + +K  I   ++  K G+++R G    I+G  N GKSSL N 
Sbjct: 186 PEYDDVETLTTKMLREKAIEVKKSIQQLLTTAKQGKVLREGLATAIVGRPNVGKSSLLNH 245

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D VE+ G++R+   +E 
Sbjct: 246 LLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDKVERIGVERSRKAIEQ 305

Query: 299 ADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEE-------YDHLI 343
           ADL++L+  +N+ +E        I        I I  K+DL      +        D LI
Sbjct: 306 ADLVMLV--LNASEELTDEDKELIQATSGKKRIVILNKTDLPQKLNMDEVRELVPEDELI 363

Query: 344 SS--FTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDC 400
           ++      G+++L  KI  +     +    +I  ++ RH+  L+Q    L+ A L   D 
Sbjct: 364 TTSVLKKTGVDKLEEKIAELFFGGIENSQSTIMVTNARHIALLNQAEDSLD-AVLQGLDS 422

Query: 401 GL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G+  D+   ++  A   LG+ITG    ++LL  +FS+FC+GK
Sbjct: 423 GMPVDLCQIDMTNAWDELGEITGDSYQDELLTQLFSQFCLGK 464


>gi|319891293|ref|YP_004148168.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317160989|gb|ADV04532.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 460

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 151/463 (32%), Positives = 250/463 (53%), Gaps = 35/463 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLDGRILD 62
           +TI ++ST     AI I+RLSG    ++ + + K K   K  P   ++ Y     G I+D
Sbjct: 5   DTITSISTPMGEGAIGIVRLSGHDAVEIADKLYKGKHLLKDVPTH-TINY-----GHIID 58

Query: 63  --------KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                   + ++ V  +P +FT ED  E + HGGI  +N +LE L      R+A PGE++
Sbjct: 59  PETEEVVEEVMVSVLRAPRTFTREDIVEINCHGGILTINRVLE-LTMTYGARMAEPGEYT 117

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E 
Sbjct: 118 KRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEV 177

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV++ +++ +L     +K +I   +  G  G+I+R G   VI+G  N GKSS
Sbjct: 178 NIDYPEYDDVEDATTEFLLERSQEIKQEIQKLLDTGVQGKIMREGLSTVIVGKPNVGKSS 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           + N L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVE+ G++R+  
Sbjct: 238 MLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRK 297

Query: 295 EVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI---- 343
            +  ADLIL +   N       +K     KN D I I  K+DL       E + ++    
Sbjct: 298 ALSEADLILFVLNYNEPLTEDDRKLYEVIKNEDAIVIINKTDLEQRLDLAEVEAMVGDMP 357

Query: 344 ----SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNE 397
               S    +G++EL  +I+ +    + +    +  S+ RH+  L Q    ++ A    E
Sbjct: 358 IIQTSMLQQQGIDELEIQIRDLFFGGEVQSQDMTYVSNSRHISLLKQAKNAIQDAIDAAE 417

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  +L      LG+I G    E+L+D +FS+FC+GK
Sbjct: 418 MGVPMDMVQIDLTRTWEILGEIIGESASEELIDQLFSQFCLGK 460


>gi|56750048|ref|YP_170749.1| tRNA modification GTPase TrmE [Synechococcus elongatus PCC 6301]
 gi|56685007|dbj|BAD78229.1| thiophen and furan oxidation protein [Synechococcus elongatus PCC
           6301]
          Length = 482

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 149/462 (32%), Positives = 245/462 (53%), Gaps = 33/462 (7%)

Query: 6   ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56
           +TI A++T  +P   ++ I+RLSG +  ++    F    ++P+    S R  +G      
Sbjct: 27  DTIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQIAGQQPWE---SHRILYGYIRDPE 83

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            GR++D+ LL+   +P S+T ED  E H HGG+  V   L+ L      RLA PGEF+ R
Sbjct: 84  SGRLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQ-LCIRAGARLAEPGEFTLR 142

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AES+ADLIS+++    + ++  + G+L     Q  D+   I + +EA +
Sbjct: 143 AFLNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAEVEARI 202

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF  E+D+     + +   +     D+ + +S    GE++R G KI I+G  N GKSSL 
Sbjct: 203 DF--EDDLPPLDLEAIAAQLTAAGADMQAILSTADRGELLRTGLKIAIVGRPNVGKSSLL 260

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NA ++ D AIVTD+PG TRD++   L + G  V++ DTAGIRET D VE+ G++R+    
Sbjct: 261 NAWSRCDRAIVTDLPGRTRDLVESQLIVGGIPVQVLDTAGIRETSDQVEQIGVERSRRAA 320

Query: 297 ENADLILLLKEIN---SKKEISFPKNID---FIFIGTKSDLYSTY--------TEEYDHL 342
           ++ADL+LL  + +   S ++ +  + +     + +  K D  S           +E+  +
Sbjct: 321 QSADLVLLTIDASAGWSAEDQTIWEAVSDRPILLVINKRDRLSEAERHAIALPQQEFKAI 380

Query: 343 ISSFTGE--GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
           + +   +  G+E+L   I  ++ +       +    ++R +  L+     L       + 
Sbjct: 381 VWTAAAQQKGIEDLEAAILAAVGTGDLTSANWDWALNQRQVAALTTAQTALRRVEETLQA 440

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LD    +LR A  +LG ITG    E +LD+IFS+FCIGK
Sbjct: 441 QLPLDFWTIDLREAIAALGSITGEGIAESMLDLIFSRFCIGK 482


>gi|260062619|ref|YP_003195699.1| tRNA modification GTPase TrmE [Robiginitalea biformata HTCC2501]
 gi|88784186|gb|EAR15356.1| tRNA modification GTPase [Robiginitalea biformata HTCC2501]
          Length = 462

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 158/465 (33%), Positives = 242/465 (52%), Gaps = 32/465 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVC--EFICKKKKPFPRKASLRYFFGL---DG 58
           +++TI A++T A   AI+++RLSGP    +   +F     K            G      
Sbjct: 2   DRDTIIALATPAGSGAIAVLRLSGPEAIPLAAEKFRAASGKALEDCPGHTVHLGTIRKGD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           RILD+ L  VF SP S+TGED  E   HG + +   IL  L      R+ANPGEF+ RAF
Sbjct: 62  RILDEVLATVFRSPRSYTGEDVVEISCHGSVYIQQEILN-LFLDSGCRMANPGEFTLRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+SE +   +++++ M G  SS   +  ++L H  S I  +LDF
Sbjct: 121 INGKMDLSQAEAVADLIASENKASHQIALQQMRGGYSSEIAKLREELLHFASMITLELDF 180

Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           S E DV+ F+ +E    +L  L   +   I    LG +++ G  + I G  N GKS+L N
Sbjct: 181 SGE-DVE-FADREAFFGLLDRLSALLKGLIDSFALGNVLKKGIPVAIAGAPNVGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL +++ AIV++I GTTRD +  ++ LEG   +  DTAGIRET+D VE  GI++TF ++E
Sbjct: 239 ALLREERAIVSEIAGTTRDAIEDEIVLEGIGFRFIDTAGIRETEDTVEHIGIRKTFEKME 298

Query: 298 NADLILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
            A +I+ +                EI S +E   P     + +     L     ++ +  
Sbjct: 299 AARVIIYMVDGSRAHPDLLASWSAEIQSIRE-RHPDKPVILLVNKTDRLDDKARKQLEEA 357

Query: 343 ------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASL 395
                 IS+ TGEGLE+L   +  +++    +    + S+ RH   L +    +  +   
Sbjct: 358 LPEALGISARTGEGLEQLQASLLGLVNRGVLENNDPVVSNSRHYQALVKAQEAIGNVREG 417

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            E     D+++ ++  A   LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 MEAGIPSDLVSVDINEALHHLGEITGQISTDDLLGNIFSNFCIGK 462


>gi|254423905|ref|ZP_05037623.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7335]
 gi|196191394|gb|EDX86358.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7335]
          Length = 459

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 240/457 (52%), Gaps = 22/457 (4%)

Query: 3   HEKETIFAVSTGALP--SAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGLDG 58
           H+ ETI A++T  +P   ++ I+RLSG     + +  F    ++P+     L        
Sbjct: 6   HQAETIVAIATAIVPEQGSVGIVRLSGLDAIAIAKQLFHAPGRQPWESHRILYGHIHSQQ 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ LL++  SP S+T ED  EFH HGGI +    + +L      RLA PGEF+ RAF
Sbjct: 66  TIVDEALLLLMESPRSYTREDVVEFHCHGGI-MAVQQVLQLCLQQGARLAQPGEFTLRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AES+ADL+ +++    + ++ G+ G+L+ +  Q   +   + + IEA +DF
Sbjct: 125 LNGRLDLTQAESVADLVGAQSPQAAQTALMGIRGKLAEVIRQLRSQCLDVLAEIEARVDF 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           ++  D+   +  +V + +  + + ++  +     GE++R G K+ I+G  N GKSSL NA
Sbjct: 185 AD--DLPPINEDDVRSRLQSIHHQLAQVLLTADQGELLRTGLKVAIIGQPNVGKSSLLNA 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            +K D AIVT++PGTTRDV+   L + G  +++ DTAGI    + VEK GI+R+    ++
Sbjct: 243 WSKSDRAIVTNLPGTTRDVVESQLIVGGIPIQVLDTAGIHAATNEVEKIGIERSLTAAQS 302

Query: 299 ADLILLLKEINSKKEISFP------KNIDFIFIGTKSDLY-----STYTEEYDHLI--SS 345
           ADL+LL  +       +        K+   I +  K DL      +T    +  ++  ++
Sbjct: 303 ADLVLLTIDATVGWTAADQALYEQIKDTPHIIVVNKIDLLADSHPTTLPLPHSPIVHTAA 362

Query: 346 FTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDCGLD 403
               G+ EL   I S   +         I  ++R    L+Q  +   ++         LD
Sbjct: 363 AVNHGIPELEAAILSAANAGDLTAANTDIAINQRQAAALTQADIAIAQVEQTIANALPLD 422

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +LR+A  +LG++TG    E +LD IFS+FCIGK
Sbjct: 423 FWTIDLRIAIHALGEVTGEEITESMLDEIFSRFCIGK 459


>gi|229020710|ref|ZP_04177436.1| tRNA modification GTPase mnmE [Bacillus cereus AH1273]
 gi|229026925|ref|ZP_04183248.1| tRNA modification GTPase mnmE [Bacillus cereus AH1272]
 gi|228734383|gb|EEL85054.1| tRNA modification GTPase mnmE [Bacillus cereus AH1272]
 gi|228740586|gb|EEL90858.1| tRNA modification GTPase mnmE [Bacillus cereus AH1273]
          Length = 458

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 145/458 (31%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +  + I K K      + ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAIEKVDRIFKGKDLTQVDSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQA 300

Query: 300 DLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS- 345
           DL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++ 
Sbjct: 301 DLVLVVVNYSEALTNEDEELFRAVQGKDFIIIVNKTDLPQEIDMERVTELAAGNRVITTS 360

Query: 346 -FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q    + +     E    +
Sbjct: 361 LIEEQGIDELEKAIADLFFEGAIDSADMTYVSNTRHIGLLTQAGTTIGDAIEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|300214038|gb|ADJ78454.1| tRNA modification GTPase mnmE [Lactobacillus salivarius CECT 5713]
          Length = 464

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 155/462 (33%), Positives = 252/462 (54%), Gaps = 30/462 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGRI- 60
           E +TI A+ST     AISI+RLSG    ++   + K K  +  P   ++ Y   ++ +  
Sbjct: 8   EFDTIAAISTPPGEGAISIVRLSGEDAVKIANKVFKGKNLEKVPTH-TINYGHIVNPKTN 66

Query: 61  --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             LD+ ++ V  +P +FT ED  E + HGGI   N IL+ L      RLA PGEF++RAF
Sbjct: 67  EELDEVMVSVMLAPRTFTREDVIEINCHGGIVPTNQILQLLLS-NGARLAEPGEFTKRAF 125

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            +G+IDL +AES+ DLI ++T+   ++++  + G LS L       +  + + +E ++D+
Sbjct: 126 LHGRIDLTQAESVMDLIRAKTDRSMKVALNQLDGNLSHLIRNLRQDILDVLAQVEVNIDY 185

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  ++K +    + +K  I   ++  K G+++R G    I+G  N GKSSL N 
Sbjct: 186 PEYDDVETLTTKMLREKAIEVKKSIQQLLTTAKQGKVLREGLATAIVGRPNVGKSSLLNH 245

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D VE+ G++R+   +E 
Sbjct: 246 LLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDKVERIGVERSRKAIEQ 305

Query: 299 ADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEE-------YDHLI 343
           ADL++L+  +N+ +E        I        I I  K+DL      +        D LI
Sbjct: 306 ADLVMLV--LNASEELTDEDKELIQATSGKKRIVILNKTDLPRKLNMDEVRELVPEDELI 363

Query: 344 SS--FTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDC 400
           ++      G+++L  KI  +     +    +I  ++ RH+  L+Q    L+ A L   D 
Sbjct: 364 TTSVLKKTGVDKLEEKIAELFFGGIENSQSTIMVTNARHIALLNQAEDSLD-AVLQGLDS 422

Query: 401 GL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G+  D+   ++  A   LG+ITG    ++LL  +FS+FC+GK
Sbjct: 423 GMPVDLCQIDMTNAWDELGEITGDSYQDELLTQLFSQFCLGK 464


>gi|332522452|ref|ZP_08398704.1| tRNA modification GTPase TrmE [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313716|gb|EGJ26701.1| tRNA modification GTPase TrmE [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 458

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 146/462 (31%), Positives = 252/462 (54%), Gaps = 28/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG     +   + K K      AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALNIANKVFKGKN-LHEVASHTINYGHIINP 61

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +  ILD+ ++ V  +P++FT ED  E + HGGIAV N IL+ L K    R+A PGEF++
Sbjct: 62  ANQEILDEVMVTVMLAPKTFTREDVIEINTHGGIAVTNEILQLLIKQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSELINNTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + +   + G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQALLENLLRTARRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDD+VEK G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDLVEKIGVERSKKA 300

Query: 296 VENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
           ++ ADL+LL+        +  +  +   +  + + +  K+DL      E D L S F   
Sbjct: 301 LKEADLVLLVLNASEPLTLQDRTLLELSQESNRLILLNKTDLPERI--ETDQLPSDFI-- 356

Query: 350 GLEELINKIKSILSNKFKKLPF----------SIPSHKRHLYHLSQTVRYLEMASLN-EK 398
            +  L +K   ++ ++  +L F          +  S+ RH+  + Q ++ L+  +   E 
Sbjct: 357 PISVLHHKNIDMIEDRINQLFFDNAGLVEQDATYLSNARHISLIEQALQSLQAVNDGLEM 416

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 417 GMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|257417403|ref|ZP_05594397.1| tRNA modification GTPase [Enterococcus faecalis AR01/DG]
 gi|257159231|gb|EEU89191.1| tRNA modification GTPase [Enterococcus faecalis ARO1/DG]
          Length = 465

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 148/461 (32%), Positives = 255/461 (55%), Gaps = 26/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LD 57
           E +TI A+ST     AISI+RLSG     +   + +   K   +  +    +G      +
Sbjct: 7   EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 66

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ +L V  +P++FT ED  E + HGGI VVN +L+ L +    R+A PGEF++RA
Sbjct: 67  DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMAEPGEFTKRA 125

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E ++D
Sbjct: 126 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNID 185

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 186 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLN 245

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   + 
Sbjct: 246 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 305

Query: 298 NADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTY-TEEYDHL-------- 342
           ++DLILL+   + K      + +   K +  + +  K DL +     E   L        
Sbjct: 306 DSDLILLVLNQSEKLTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEILS 365

Query: 343 ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           +S  +  GL++L  KI  +    +  +   +  S+ RH+  L Q    L+   +N  + G
Sbjct: 366 VSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEV-INGIEAG 424

Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 425 MPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|85057945|ref|YP_456861.1| tRNA modification GTPase TrmE [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|123518017|sp|Q2NIG1|MNME_AYWBP RecName: Full=tRNA modification GTPase mnmE
 gi|84790050|gb|ABC65782.1| tRNA modification GTPase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 460

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 157/460 (34%), Positives = 246/460 (53%), Gaps = 28/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGL--DGRILD 62
           +TI A+ST      +S+IR+SG +       I K K     K  ++ + F L  D  ILD
Sbjct: 4   DTIAAISTPLGTGGVSVIRVSGNNSITEINKIFKGKNLIKAKTHTITHGFILNKDQTILD 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+ VF +P SFTGE+  E + HGGI +   +LE +  + ++RLA PGEFS+RA+ NGK
Sbjct: 64  EVLISVFKTPNSFTGENVVEINAHGGILITQMVLERILSL-DIRLAFPGEFSQRAYLNGK 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AES+ DLI +  E   +++  G+    S L     D++ ++ + IE ++D+ E +
Sbjct: 123 MDLIQAESIMDLIHATNENAIKIANSGLQKYTSQLVTSLRDQILNLIAQIEVNIDYPEYD 182

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+   + +++  ++  L   + + +S       ++ G K +I+G  N GKSSL NA   +
Sbjct: 183 DIPQITQQKIALEVQSLIKQLENILSHSHKNRYLKEGIKTLIIGRPNVGKSSLLNAFLNE 242

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +    +  G+ + + DTAGIR+TDD +EK GI RT   +  A+LI
Sbjct: 243 NKAIVSDISGTTRDFVEAYFNCRGFTLHLIDTAGIRKTDDPIEKIGILRTEKMLLQAELI 302

Query: 303 LL-LKEINSKKE-----ISFPKNIDFIFIGTKSDL-----------YSTYTEEYDHL-IS 344
           LL L + N  +E     +   +N   I IG K DL           YS+     + + +S
Sbjct: 303 LLVLDQSNYLQEEDIQLLQLTQNYPRIIIGNKVDLKSDKLISSLCDYSSQLTPQEIISVS 362

Query: 345 SFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRY---LEMASLNEKDC 400
           S    G  EL   I K    N  K   F+  S+ RH+  +   +R    L+ A L  +  
Sbjct: 363 SLDKTGFFELQQTILKKFQLNDIKPKDFNYFSNARHINQIQIALRSFQDLQQALL--QSM 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +DI + +L  A  +LG+I G      L+  +FSKFC+GK
Sbjct: 421 PIDIYSIDLTKAYQALGQIIGENQENSLIKELFSKFCLGK 460


>gi|262282851|ref|ZP_06060618.1| tRNA modification GTPase mnmE [Streptococcus sp. 2_1_36FAA]
 gi|262261103|gb|EEY79802.1| tRNA modification GTPase mnmE [Streptococcus sp. 2_1_36FAA]
          Length = 457

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 145/459 (31%), Positives = 258/459 (56%), Gaps = 22/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKDLSKVESHTLNYGHIVDPQ 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ L      R+A PGEF++R
Sbjct: 62  NQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LVIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           + ADL+LL+   +       K+ +   ++ + I +  K+DL      E D L      IS
Sbjct: 301 QEADLVLLVLNASEPLTDQDKQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPADAIKIS 358

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
               + ++++  +I  +   +    +   +  S+ RH+  + + +  L+  +   E    
Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|193213594|ref|YP_001999547.1| tRNA modification GTPase TrmE [Chlorobaculum parvum NCIB 8327]
 gi|193087071|gb|ACF12347.1| tRNA modification GTPase TrmE [Chlorobaculum parvum NCIB 8327]
          Length = 473

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 155/462 (33%), Positives = 246/462 (53%), Gaps = 32/462 (6%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI------L 61
           I A++T     A++I+R+SG     + + + +K     + A    +    GR+      +
Sbjct: 15  IAAIATPVGVGALAIVRISGAGVLDLADRVFRKAHGSEKLADAAGYTAHFGRLYDGEEMV 74

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ + +VF +P SFT E+  EF  HGG  VV  +L  L      RLA PGEF+RRAF NG
Sbjct: 75  DEVIALVFRAPRSFTAEEMVEFTCHGGPVVVGRVLR-LMLDKGCRLAEPGEFTRRAFLNG 133

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDLL+AE++ ++I + TE   R ++  M G+LS+  G   ++L   R+ IE +LDFSEE
Sbjct: 134 RIDLLQAEAIGEMIHARTESAYRTAISQMKGDLSAQLGALREQLIRSRALIELELDFSEE 193

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            DV+  S  E+   +  L+ +++  I   + G ++  G   VI G  NAGKS+L N L  
Sbjct: 194 -DVEFQSRDELTAQVETLRIEVNRLIDSYQHGRLVSEGVATVIAGKPNAGKSTLLNTLLG 252

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIV+ +PGTTRD +      +  + +++DTAG+RE  + +E EGI+R+ +++  ADL
Sbjct: 253 QERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADL 312

Query: 302 ILLLKEINSKK------EISFPKNI----DFIFIGTK-------SDLYSTYTEEYDHL-- 342
           IL L ++ +++      EI   K +     F+ +  K        DL    T+       
Sbjct: 313 ILYLLDLGTERLDDELTEIRELKAVHPEAKFLTVANKLDRADNSGDLIRAITDGTGTEVI 372

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMA-SLNEK 398
            IS+  G+G+ +L   +   L+    KL  +  + +  RH   L      L+ A  L E 
Sbjct: 373 GISALNGDGIAKLKQHMGE-LTKGLDKLHEASVLVTSLRHYEALRNASDALQNALELIEH 431

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               ++IA  LR A   +G+ITG V  E++L+ IF KFCIGK
Sbjct: 432 QSETELIAFELRAALDYVGEITGKVVNEEVLNTIFDKFCIGK 473


>gi|306821555|ref|ZP_07455153.1| tRNA modification GTPase TrmE [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550300|gb|EFM38293.1| tRNA modification GTPase TrmE [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 457

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 160/458 (34%), Positives = 250/458 (54%), Gaps = 22/458 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDG-R 59
           ++ ETI A +T    S+++IIRLSG     V E I   KK    +   R  +G  LDG +
Sbjct: 2   YDNETIVAPATSTGRSSVNIIRLSGDKSLAVAESIFMPKKYKISENPRRMIYGHILDGDK 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ ++    +P SFT ED  E + HGG   +  I+  L     +RLA  GEF++RAF 
Sbjct: 62  IIDEVMVCYMRAPHSFTCEDVVEINCHGGSKSLEEIMS-LILTKGVRLAQNGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I++++      +   + G LS    +  ++L    + I   +DF 
Sbjct: 121 NGRIDLSQAEAVIDVINAKSTKSFENAQRQLQGRLSGRIEKIDERLKKSIAQITVAIDFP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE D+   + +E+++++    +++++     K G++I +G  I I+G  N GKSSL N L
Sbjct: 181 EE-DIPEVTYEELISNVDISIDELNTLKDTYKNGKVISDGISIAIIGRPNVGKSSLLNEL 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            +++ AIVTDI GTTRD++T  L + G  V + DTAGIRET D+VEK G++R+   +ENA
Sbjct: 240 LEENRAIVTDIAGTTRDIITESLSINGISVNLIDTAGIRETQDVVEKIGVERSMSSIENA 299

Query: 300 DLILLLKEINSK-----KEISFP-KNIDFIFIGTKSDLYSTY---------TEEYDHLIS 344
           D+ILL+ + + K     KE+    ++  ++ +  KSDL S             E    IS
Sbjct: 300 DIILLVLDTSDKLNAEDKELMEKLRDRHYLILLNKSDLQSNLDINDLPDFIDRENIINIS 359

Query: 345 SFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402
           +    G+EEL   I +  +S     +   + ++ RH   +   +  L+ A  +  D   L
Sbjct: 360 TLDKRGIEELKENIYTKAVSFDDDSINNIMITNSRHYALIENAINSLKDARQSLLDNVEL 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           DI+  +   A   LG+ITG    E LLD IFSKFCIGK
Sbjct: 420 DILEIDFLNAVDYLGQITGLSVSESLLDTIFSKFCIGK 457


>gi|241889088|ref|ZP_04776392.1| tRNA modification GTPase TrmE [Gemella haemolysans ATCC 10379]
 gi|241864337|gb|EER68715.1| tRNA modification GTPase TrmE [Gemella haemolysans ATCC 10379]
          Length = 460

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 155/472 (32%), Positives = 255/472 (54%), Gaps = 51/472 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LDG 58
           ETI A+ST     AI I+RLSG   F + E I +  K K     AS    +G        
Sbjct: 3   ETICAISTALGEGAIGIVRLSGDEAFSIAEKIVRLPKGKTVESLASHTINYGNVVDPATN 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +++ +L+    P ++T ED  E + HGGI  +  +L  L      R+A PGEF++RAF
Sbjct: 63  EKIEEIMLVKMVGPRTYTTEDVIEINCHGGIITIQKVLA-LCLEHGARMAEPGEFTKRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++   M G LS+L  +   ++  I + +E ++D+
Sbjct: 122 LNGRIDLTQAEAVIDFIKSKTDEASQIANNQMQGRLSTLIKRLRAEILDILTVVEVNIDY 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +D++  ++K +L     ++N + S +   K G+II+ G    I+G  N GKSSL N 
Sbjct: 182 PEYDDLEIETTKTILEKSTSIRNSLESLLETSKQGKIIKEGINTAIIGRPNVGKSSLLNN 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDI GTTRDVL   ++++G  +K+ DTAGIRETDDIVE+ G+KR+   +E 
Sbjct: 242 LLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDDIVEQIGVKRSKEALEK 301

Query: 299 ADLILLLKEINSKKEISFPKN--------------IDFIFIGTKSDLYSTYTEEYDHLI- 343
           ADL+L L  +NS +E++                  ++ + + TK D+       Y+H I 
Sbjct: 302 ADLVLFL--LNSSEELTEDDKELLKLTEGKTTIVILNKLDLETKIDIAEVEKLAYNHPII 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMA--SLNE 397
             S  T +G++EL   I+ +         F   +  +   +LS T  +  ++ A  SLN+
Sbjct: 360 KTSMTTYKGIDELEKNIRDLF--------FGGAARPKDATYLSNTRQINLIQRALTSLND 411

Query: 398 ----KDCGLDIIAENLRLASVS-----LGKITGCVDVEQLLDIIFSKFCIGK 440
                + GL++   ++ L   +     LG++ G    ++L++ +FS+FC+GK
Sbjct: 412 AIGAAEMGLEV---DMVLIDYTNTFNLLGEVIGENSGDELINELFSRFCLGK 460


>gi|205829221|sp|Q5N638|MNME_SYNP6 RecName: Full=tRNA modification GTPase mnmE
          Length = 462

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 149/462 (32%), Positives = 245/462 (53%), Gaps = 33/462 (7%)

Query: 6   ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56
           +TI A++T  +P   ++ I+RLSG +  ++    F    ++P+    S R  +G      
Sbjct: 7   DTIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQIAGQQPWE---SHRILYGYIRDPE 63

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            GR++D+ LL+   +P S+T ED  E H HGG+  V   L+ L      RLA PGEF+ R
Sbjct: 64  SGRLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQ-LCIRAGARLAEPGEFTLR 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AES+ADLIS+++    + ++  + G+L     Q  D+   I + +EA +
Sbjct: 123 AFLNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAEVEARI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF  E+D+     + +   +     D+ + +S    GE++R G KI I+G  N GKSSL 
Sbjct: 183 DF--EDDLPPLDLEAIAAQLTAAGADMQAILSTADRGELLRTGLKIAIVGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NA ++ D AIVTD+PG TRD++   L + G  V++ DTAGIRET D VE+ G++R+    
Sbjct: 241 NAWSRCDRAIVTDLPGRTRDLVESQLIVGGIPVQVLDTAGIRETSDQVEQIGVERSRRAA 300

Query: 297 ENADLILLLKEIN---SKKEISFPKNID---FIFIGTKSDLYSTY--------TEEYDHL 342
           ++ADL+LL  + +   S ++ +  + +     + +  K D  S           +E+  +
Sbjct: 301 QSADLVLLTIDASAGWSAEDQTIWEAVSDRPILLVINKRDRLSEAERHAIALPQQEFKAI 360

Query: 343 ISSFTGE--GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
           + +   +  G+E+L   I  ++ +       +    ++R +  L+     L       + 
Sbjct: 361 VWTAAAQQKGIEDLEAAILAAVGTGDLTSANWDWALNQRQVAALTTAQTALRRVEETLQA 420

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LD    +LR A  +LG ITG    E +LD+IFS+FCIGK
Sbjct: 421 QLPLDFWTIDLREAIAALGSITGEGIAESMLDLIFSRFCIGK 462


>gi|298243558|ref|ZP_06967365.1| tRNA modification GTPase TrmE [Ktedonobacter racemifer DSM 44963]
 gi|297556612|gb|EFH90476.1| tRNA modification GTPase TrmE [Ktedonobacter racemifer DSM 44963]
          Length = 474

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 248/484 (51%), Gaps = 58/484 (11%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-----KPFPRKASLRYFFGLDG 58
           + +TI A++T      + IIR+SG   F +   + ++       P P    L Y   +D 
Sbjct: 2   QNDTIAAIATPQGVGGVGIIRVSGSDAFSLVAPLLRRPSREDIPPVPPTHQLTYRVIIDP 61

Query: 59  ---RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ILD+ L+    +P ++T ED  E   HGG  ++  IL  +      R+ANPGEF+ 
Sbjct: 62  ATQEILDEVLVAFMRAPHTYTCEDVVEIQGHGGPLILRRILRSVLAQ-GARMANPGEFTL 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF---- 171
           RAF NG++DL +AE++ DLI S+TE+ +RL+M+ + G+LS       D++ H R+     
Sbjct: 121 RAFLNGRLDLAQAEAVMDLIGSQTEVGQRLAMQQLRGKLS-------DQVEHARTSMLGA 173

Query: 172 ---IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
              IEA +DF E+ D+    ++E+L  I   +  I+  ++  + G + R G +  I+G  
Sbjct: 174 IARIEASIDFPED-DIPTPQAEELLPFIEEAQRQIARLLAGSEQGRLYRQGLRTAIIGRP 232

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           N GKSSL NAL + + AIVT I GTTRD +    +L G  + + DTAGI  T D VE+ G
Sbjct: 233 NVGKSSLLNALLRIERAIVTPIAGTTRDTVEEIANLRGIPLHLIDTAGITPTQDPVEQLG 292

Query: 289 IKRTFLEVENADLIL---------------LLKEINS-----KKEISFPKNIDFIFIGTK 328
           ++R+ L  E AD+IL               + +E+ +     K+E    +    + I  K
Sbjct: 293 VQRSRLAAETADVILHVFDGATALTEQDWQVAQELRAMGYGEKREGQAARRPVVVVI-NK 351

Query: 329 SD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKR 378
           +D         + S + +      S+ TGEGLE L N +  ++ +         + +  R
Sbjct: 352 ADCEQVIDVAAIQSFWQDASLVQTSTLTGEGLEALENTLAELVQAGNVSGNESVLITSAR 411

Query: 379 HLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436
           H   L +   +L  A  SL +K   LD ++ +LR A  +LG++TG    E LLD IFS+F
Sbjct: 412 HQEALRRGAEHLNAAILSLGQK-VPLDFVSIDLRAAYDALGEVTGETASEDLLDRIFSEF 470

Query: 437 CIGK 440
           CIGK
Sbjct: 471 CIGK 474


>gi|285019932|ref|YP_003377643.1| tRNA modification GTPase [Xanthomonas albilineans GPE PC73]
 gi|283475150|emb|CBA17649.1| putative trna modification gtpase protein [Xanthomonas albilineans]
          Length = 447

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 143/446 (32%), Positives = 234/446 (52%), Gaps = 16/446 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + ++R+SGP+  ++ + +       PR A   +F    G  LD G+
Sbjct: 7   DTIAAIATAPGAGGVGMVRVSGPAAGRIADGL-GLGALLPRSARYAHFRDAQGDTLDDGI 65

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HG   ++  ++    ++   R A PGEFS RAF N K+DL
Sbjct: 66  ALWFPAPRSFTGEDVLELQAHGSPVLLRQLVARCCEL-GARPARPGEFSERAFLNRKLDL 124

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI++      R +   + G  S       +++  +R  +EA +DF++E  ++
Sbjct: 125 AQAEAIADLIAAGDLRAARAARRSLDGVFSRRVEDLAEQVIRLRLHVEAAIDFADEA-LE 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                +V   +  ++ D++    + + G  +R+G   V++G  NAGKSSL NALA    A
Sbjct: 184 TLGGAQVRTGLQQVRADLAQLHLEAERGRRLRDGLHAVLVGPPNAGKSSLLNALAGSARA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRD L   + ++G  + + DTAG+R+  D +E+EG++R  LE++ ADL L++
Sbjct: 244 IVTDIAGTTRDTLHETVCVDGLELTLVDTAGLRDGGDAIEREGMRRARLELQRADLALVV 303

Query: 306 ---KEINSKKEISFPKNIDF---IFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEEL--- 354
              +++   +        D    ++I  K DL +   +       IS+ TG GLE+L   
Sbjct: 304 LDARDVAVGRAAVAEAIADVPQRLWIHNKCDLLTKVPDACADTVYISAATGSGLEQLHLH 363

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
           +  I    + +  +  FS  +  RH+  L +   +   A    +   L++ AE LRL   
Sbjct: 364 LRAIACATAGEGSEGEFS--ARIRHVEALQRASMHAAAAMAELEHERLELAAEELRLTHN 421

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L +I G    + LL  IFS FCIGK
Sbjct: 422 ALCEIVGTFSADDLLGRIFSSFCIGK 447


>gi|256618548|ref|ZP_05475394.1| tRNA modification GTPase [Enterococcus faecalis ATCC 4200]
 gi|256598075|gb|EEU17251.1| tRNA modification GTPase [Enterococcus faecalis ATCC 4200]
          Length = 465

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 148/463 (31%), Positives = 256/463 (55%), Gaps = 30/463 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LD 57
           E +TI A+ST     AISI+RLSG     +   + +   K   +  +    +G      +
Sbjct: 7   EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 66

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ +L V  +P++FT ED  E + HGGI VVN +L+ L +    R+  PGEF++RA
Sbjct: 67  DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMGEPGEFTKRA 125

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E ++D
Sbjct: 126 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNID 185

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 186 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLN 245

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   + 
Sbjct: 246 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 305

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342
           ++DLILL+  +N  +E++          K +  + +  K DL +     E   L      
Sbjct: 306 DSDLILLV--LNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363

Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             +S  +  GL++L  KI  +    +  +   +  S+ RH+  L Q    L+   +N  +
Sbjct: 364 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEV-INGIE 422

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|229181730|ref|ZP_04309053.1| tRNA modification GTPase mnmE [Bacillus cereus 172560W]
 gi|228601763|gb|EEK59261.1| tRNA modification GTPase mnmE [Bacillus cereus 172560W]
          Length = 458

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 145/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +    I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  +FI I  K+DL      E        + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKEFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|222152198|ref|YP_002561358.1| tRNA modification GTPase TrmE [Macrococcus caseolyticus JCSC5402]
 gi|222121327|dbj|BAH18662.1| tRNA modification GTPase TrmE [Macrococcus caseolyticus JCSC5402]
          Length = 454

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 147/443 (33%), Positives = 243/443 (54%), Gaps = 23/443 (5%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRILDKGLLIVFPSPES 74
           + I+RLSG     + + + K K      AS    +G         I+++ ++ V  +P +
Sbjct: 13  LRIVRLSGNDAISIADKLYKGKHQLSDVASHTINYGHIIDPASNEIIEEVMVAVMRAPRT 72

Query: 75  FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134
           +T ED  E + HGGI  VN +LE LA     RLA PGEF++RAF NG+IDL +AE+  D 
Sbjct: 73  YTREDIVEINCHGGIMTVNRVLE-LALTNGARLAEPGEFTKRAFLNGRIDLSQAEATMDF 131

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           I S+T+   R++M+ + G LS L       +  I + +E ++D+ E +DV+  ++  ++ 
Sbjct: 132 IRSKTDRASRVAMQQIEGRLSVLIKGLRQSILEILAQVEVNIDYPEYDDVEEATNTFLME 191

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +   ++  I++ +     G+I+R G   VI+G  N GKSS+ N L + + AIVT+I GTT
Sbjct: 192 EARKIEGSITNLLQTANQGKILREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEIAGTT 251

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL---KEINSK 311
           RDVL   +++ G  +++ DTAGIRET+DIVEK G++R+   ++ ADLIL +    EI ++
Sbjct: 252 RDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSREALKKADLILYVLNNNEILTE 311

Query: 312 KEISFP---KNIDFIFIGTKSDLYSTYT-EEYDHLI--------SSFTGEGLEELINKIK 359
           ++       KN D I I  K+DL +    EE   ++        S  + +G+EEL  +I+
Sbjct: 312 EDYKLAEIIKNEDVIVIINKTDLETKLDLEEVKTMVGNAPIVRTSMLSQQGIEELEEQIR 371

Query: 360 SI-LSNKFKKLPFSIPSHKRHLYHL-SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           ++  + +      +  S+ RH+  L S      +  S  E    +D+I  +L      LG
Sbjct: 372 TLFFAGEVSNQDMTYVSNARHISLLKSAKTSIGDAISAAELGVPVDMIQIDLIKTWELLG 431

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           ++ G    + L+D +FS+FC+GK
Sbjct: 432 EVIGESVDDGLIDQLFSQFCLGK 454


>gi|225570320|ref|ZP_03779345.1| hypothetical protein CLOHYLEM_06417 [Clostridium hylemonae DSM
           15053]
 gi|225160852|gb|EEG73471.1| hypothetical protein CLOHYLEM_06417 [Clostridium hylemonae DSM
           15053]
          Length = 478

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 161/476 (33%), Positives = 249/476 (52%), Gaps = 49/476 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-I 60
           +TI A+ST    S I I+R+SG   F + + I +    KK    +  ++ Y +  DG   
Sbjct: 11  QTIAAISTAMSDSGIGIVRMSGGKAFMIADRIYEGKNGKKLAAQKSHTIHYGYIKDGEET 70

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+++   P S+TGED+ E + HGG+ +V  +LE + K    R A PGEF++RAF N
Sbjct: 71  IDEVLVMLMRGPHSYTGEDTVEVNCHGGVYLVRRVLELMIK-NGARPAEPGEFTKRAFLN 129

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ DLI+S+ E   + S+  + G + S      +K+ +  +FIE  LD  E
Sbjct: 130 GRLDLSQAEAVGDLIASQNEYALKSSVSQLKGNVKSKINDIRNKIIYHTAFIETALDDPE 189

Query: 181 EEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
              V  +    +  +N++L   N + S    G+   II+ G K VI+G  NAGKSSL N 
Sbjct: 190 HISVDGYGEELRSAVNELLLEINKLLSTCDNGR---IIKEGIKTVIVGRPNAGKSSLLNV 246

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVT++ GTTRD+L   ++L+G  + I DTAGIRETDDIVEK G+ +  +  + 
Sbjct: 247 LVGEERAIVTEVAGTTRDILEEHINLQGISLNIIDTAGIRETDDIVEKIGVDKAKMYADE 306

Query: 299 ADLIL---------------LLKEINSKKEISFPKNIDFIFIGTK---SDLYSTYTEEYD 340
           ADLIL               +LK I  K  I      D   I TK    D+Y+      +
Sbjct: 307 ADLILYVIDASAPLDENDRQILKMIYGKPAIILLNKTDLDMIITKEKIKDVYNASNPANN 366

Query: 341 HL----------ISSFTGEGLEELINKIKSILSNKFK-KLPFS---IPSHKRHLYHLSQT 386
           ++          +S+    G+ +    +K++    F+  L F+     ++ RH   L   
Sbjct: 367 NISKSKEIQVIEVSAKNQNGIADFEEAVKNMF---FEGNLSFNDEIYITNVRHKAALQDA 423

Query: 387 VRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              L+   ++  D G+  D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 424 GGSLQKV-IDSIDMGMPEDFYSIDLLDAYKSLGDITGDTMGEDLINEIFSKFCMGK 478


>gi|282901593|ref|ZP_06309512.1| tRNA modification GTPase TrmE [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193519|gb|EFA68497.1| tRNA modification GTPase TrmE [Cylindrospermopsis raciborskii
           CS-505]
          Length = 460

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 149/452 (32%), Positives = 238/452 (52%), Gaps = 45/452 (9%)

Query: 19  AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPS 71
           ++ I+R+SG     +    F    K+ +    S R  +G        +++D+ LL++  +
Sbjct: 24  SVGIVRVSGDQAMAIAHTLFYTPGKQIW---ESHRILYGFVRQPETKQVVDEALLLIMKA 80

Query: 72  PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131
           P SFT ED  EFH HGGI  V  +L+ L      RLA PGEF+ RAF NG++DL +AES+
Sbjct: 81  PRSFTREDVVEFHCHGGIIPVQQVLQ-LCLENGARLAQPGEFTLRAFLNGRLDLTQAESI 139

Query: 132 ADLISSETEMQRRLSMEGMSGELS----SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           ADL+ +++    + ++ G+ G+L+    SL  Q +D L  I    EA +DF  EED+   
Sbjct: 140 ADLVGAKSPQAAQTALAGLRGKLAQPIRSLRNQCLDILAEI----EARIDF--EEDLPPL 193

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             + ++  I  +   I+  +S  + GE++R+G K+ I+G  N GKSSL NA ++ D AIV
Sbjct: 194 DQERIITQINQISVKIARLLSTKEKGELLRSGLKVAIVGRPNVGKSSLLNAWSQCDRAIV 253

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-- 305
           TD+PGTTRD++   L + G  +++ DTAGIRET D VEK G++R+     +ADL+LL   
Sbjct: 254 TDLPGTTRDIVESQLVVGGIPIQVLDTAGIRETVDQVEKLGVERSRQAANSADLVLLTID 313

Query: 306 -------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE--G 350
                        +++  +  I     ID +      DL    +   +  + +   +  G
Sbjct: 314 ATAGWQSGDEEIYQQVKHRPLILVINKIDLV-----EDLGGICSPNIEKAVKTAAAQNRG 368

Query: 351 LEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDCGLDIIAEN 408
           +E+L   I  ++ + K       +  ++R    L +  +  +++         LD    +
Sbjct: 369 IEDLEQAILEVVQTQKIVAGDLDLAINQRQAAALIKAQIDLVQVQKTIVDQLPLDFWTID 428

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LR A  +LG+ITG    E LLD+IFS+FCIGK
Sbjct: 429 LRGAIHALGEITGEEVTESLLDLIFSRFCIGK 460


>gi|301299788|ref|ZP_07206030.1| tRNA modification GTPase TrmE [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852601|gb|EFK80243.1| tRNA modification GTPase TrmE [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 464

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 155/462 (33%), Positives = 252/462 (54%), Gaps = 30/462 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGRI- 60
           E +TI A+ST     AISI+RLSG    ++   + K K  +  P   ++ Y   ++ +  
Sbjct: 8   EFDTIAAISTPPGEGAISIVRLSGEDAVKIANKVFKGKNLEKVPTH-TINYGHIVNPKTN 66

Query: 61  --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             LD+ ++ V  +P +FT ED  E + HGGI   N IL+ L      RLA PGEF++RAF
Sbjct: 67  EELDEVMVSVMLAPRTFTREDIIEINCHGGIVPTNQILQLLLS-NGARLAEPGEFTKRAF 125

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            +G+IDL +AES+ DLI ++T+   ++++  + G LS L       +  + + +E ++D+
Sbjct: 126 LHGRIDLTQAESVMDLIRAKTDRSMKVALNQLDGNLSHLIRNLRQDILDVLAQVEVNIDY 185

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  ++K +    + +K  I   ++  K G+++R G    I+G  N GKSSL N 
Sbjct: 186 PEYDDVETLTTKMLREKAIEVKKSIQQLLTTAKQGKVLREGLATAIVGRPNVGKSSLLNH 245

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D VE+ G++R+   +E 
Sbjct: 246 LLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDKVERIGVERSRKAIEQ 305

Query: 299 ADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEE-------YDHLI 343
           ADL++L+  +N+ +E        I        I I  K+DL      +        D LI
Sbjct: 306 ADLVMLV--LNASEELTDEDKELIQATSGKKRIVILNKTDLPQKLNMDEVRELVPEDELI 363

Query: 344 SS--FTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDC 400
           ++      G+++L  KI  +     +    +I  ++ RH+  L+Q    L+ A L   D 
Sbjct: 364 TTSVLKKTGVDKLEEKIAELFFGGIENSQSTIMVTNARHIALLNQAEDSLD-AVLQGLDS 422

Query: 401 GL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G+  D+   ++  A   LG+ITG    ++LL  +FS+FC+GK
Sbjct: 423 GMPVDLCQIDMTNAWDELGEITGDSYQDELLTQLFSQFCLGK 464


>gi|255931495|ref|XP_002557304.1| Pc12g04350 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581923|emb|CAP80062.1| Pc12g04350 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 612

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 124/323 (38%), Positives = 187/323 (57%), Gaps = 25/323 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFF-----GLDGR 59
           TI+A+ST    +AI+++R+SGP+C  + + +C    P P  R A LR  +          
Sbjct: 68  TIYALSTAIGRAAIAVVRVSGPACASIYKSLCPNH-PLPKARYAVLRTLYDPTQPPTPNT 126

Query: 60  ILDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM----PNLRLANPGEFS 114
           ILD G L++ FPSP + TGED  E H+HGG A+   +L  +A+       +R A PGEF+
Sbjct: 127 ILDAGALVLYFPSPRTATGEDILELHIHGGPAITKAVLSAIAQTNTPEQTVRYAEPGEFT 186

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAF N ++ L + E+L D +S++TE QRRL++ G S  L + Y +W   L + R  +EA
Sbjct: 187 RRAFMNDRLSLPQIEALGDTLSADTEQQRRLAVRGSSDALLNRYERWRQGLLYARGELEA 246

Query: 175 DLDFSEEEDVQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
            +DFSE++     + +    V   +  L   I  HI+    GE++RNG ++ +LG  NAG
Sbjct: 247 LIDFSEDQHFDESTEELVSSVATQVRALSVQIGFHIANASRGELLRNGIRVALLGAPNAG 306

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-------ETDDI- 283
           KSSL N +  K+ AIV+   GTTRD++ + +DL G+  K+ D AGIR       ET  I 
Sbjct: 307 KSSLLNRVVGKEAAIVSTEQGTTRDIVDVGVDLGGWYCKLGDMAGIRAEGSGDGETVVIG 366

Query: 284 -VEKEGIKRTFLEVENADLILLL 305
            VEKEGI+R       +D+++++
Sbjct: 367 PVEKEGIRRARERALESDVVIVV 389



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITG---CVDVEQLLDIIFSKFCIGK 440
           +AS  E +  +   AE+LR A+  L KITG     DVE +L ++F KFC+GK
Sbjct: 561 LASHAESEVDIVTAAEHLRFAADMLAKITGKGESGDVEDVLGVVFEKFCVGK 612


>gi|324329435|gb|ADY24695.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 458

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 251/459 (54%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +    I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G     +    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGCLRQDILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+L++    + + ++ E  F   +  DFI I  K+DL      E        + +I++
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRIITT 359

Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
                +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|20809125|ref|NP_624296.1| tRNA modification GTPase TrmE [Thermoanaerobacter tengcongensis
           MB4]
 gi|25009498|sp|Q8R6K8|MNME_THETN RecName: Full=tRNA modification GTPase mnmE
 gi|20517805|gb|AAM25900.1| predicted GTPase [Thermoanaerobacter tengcongensis MB4]
          Length = 460

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 168/472 (35%), Positives = 255/472 (54%), Gaps = 48/472 (10%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGL 56
           E +TI A+ST    + I I+R+SG       E I K  +PF +K        ++ Y   +
Sbjct: 2   EFDTIAAISTFPGEAGIGIVRISGDEAL---EIISKIFRPFRKKDIKSVKSHTIHYGHIV 58

Query: 57  D---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           D   G + D+ L+ V   P ++T ED  E + HGGI V + ILE + K    RLA PGEF
Sbjct: 59  DPETGEVYDEVLVTVMRKPNTYTREDVVEINCHGGIVVSSKILELVLKH-GARLAEPGEF 117

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG+IDL +AE++ D+I+S+T +  R + + ++G L        +K+  + S + 
Sbjct: 118 TKRAFLNGRIDLSQAEAVIDIITSKTMLANRYAQKQLAGVLGQKMKDLKNKIMELLSHLL 177

Query: 174 ADLDFSEEEDVQNFS------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           A +DF EE+  +         +K++LNDI +L       I+  + G IIR G K  I+G 
Sbjct: 178 ALIDFPEEDVEELEREEIKRRAKDILNDIEYL-------IASSESGRIIREGLKTAIIGK 230

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKSSL NAL K++ AIVTDIPGTTRDV+   ++++G  +K+ DTAGIR TD++VEK 
Sbjct: 231 PNVGKSSLLNALLKQNRAIVTDIPGTTRDVIEEYMNIKGIPIKLIDTAGIRHTDELVEKI 290

Query: 288 GIKRTFLEVENADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTY-TEE 338
           G++++   +  ADLIL        L KE     +I   KNI  IF+  K DL      EE
Sbjct: 291 GVEKSKEVLAEADLILFVLDASRDLTKEDYEIFDILSGKNI--IFVLNKVDLPKKIDEEE 348

Query: 339 YDHL--------ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
              L        +S+    GL++L ++I + +   K       I ++ RH   L    ++
Sbjct: 349 LKKLVGNGIIVEVSTVERTGLDKLESEIYNLVFKGKVSATEEEIITNARHREVLINAKKH 408

Query: 390 LE-MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +E +    EK    D+I  ++  A   +GKITG    E +++ IF +FC+GK
Sbjct: 409 MESVIEAIEKGYSEDLITIDVNGALNEIGKITGETATEDVINQIFERFCVGK 460


>gi|307128609|ref|YP_003880639.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri CARI]
 gi|306483071|gb|ADM89941.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri CARI]
          Length = 454

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 157/462 (33%), Positives = 247/462 (53%), Gaps = 30/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRY-FFGL 56
           M    +TI A++T +   AI++IR+SG +  ++ + I      KK F  K S+   +   
Sbjct: 1   MLKNNDTIVAIATPSGYGAIAVIRISGKNSIKILKKIFLSFSVKKNFSEKRSINLGYIKS 60

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +I+DK L+ +F  P+S+TGED  E   HG I + N +L  +      RLANPGEF+ R
Sbjct: 61  KNKIIDKVLIFIFKKPKSYTGEDIVEISCHGSIYIQNKLLSIIID-QGARLANPGEFTLR 119

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGKIDL +AES+ D+++SET      ++  M G +S+L      KL    S IE +L
Sbjct: 120 AFLNGKIDLCQAESILDIVNSETYFSHEFAINQMRGNISNLIKNLRKKLIDFLSLIEFEL 179

Query: 177 DFSEEE-DVQNF-SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           DFSEE  ++ N+   K++L++I+     +   I   K+G  ++NG  + I+G  N GKS+
Sbjct: 180 DFSEENYNIINYLEFKKLLDNII---KKLKYLIKSFKIGNALKNGISVSIIGCPNVGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTF 293
           LFN L K + +IV+++ GTTR+ +   L + G   +  DTAGI  +T + +EK GIK+T+
Sbjct: 237 LFNKLLKYERSIVSNMAGTTRNYIEDSLIINGIKYRFIDTAGINNKTKNYIEKLGIKKTY 296

Query: 294 LEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
             ++ +D+IL +              K +  +P    FI I     +      +    IS
Sbjct: 297 SNIKKSDIILYVFDNFNKKIIYNKKKKLQKEYPNKKIFIIINKYDLIKKNINYKNIINIS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKL-----PFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
           +  G G+ +L+ KI    +N +KK+        + +  RH     + V YL     N EK
Sbjct: 357 AKYGYGINKLLYKI----TNFYKKMINLKKNSIVITQTRHYESFKEAVFYLSKVKENLEK 412

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               + ++ ++R A   LGK+TG V  E++L  IFS+FCIGK
Sbjct: 413 SIFPEFLSIDIRTALDYLGKVTGEVTNEEILSNIFSQFCIGK 454


>gi|73663753|ref|YP_302534.1| tRNA modification GTPase TrmE [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72496268|dbj|BAE19589.1| putative tRNA modification GTPase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 460

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 148/460 (32%), Positives = 248/460 (53%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62
           +TI ++ST     AI I+RLSG     + + + K K+      S    +G    I+D   
Sbjct: 5   DTITSISTPMGEGAIGIVRLSGVDAVDIADKLYKGKERLEDVTSHTINYG---HIIDPES 61

Query: 63  -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
                + ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A+PGE+++RA
Sbjct: 62  NEVVEEVMVSVLRAPKTFTREDIVEINCHGGILTINRILE-LTMTYGARMADPGEYTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS +  +    +  I + +E ++D
Sbjct: 121 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDMIKRQRQSILEILAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 181 YPEYDDVEDATTEVLLGKSNEIKTEINKLLDTGTQGKIMREGLSTVIVGKPNVGKSSMLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++PGTTRD L   +++ G  +++ DTAGIR+T+DIVE+ G++R+   + 
Sbjct: 241 NLIQDNKAIVTEVPGTTRDTLEEYVNVRGVPLRLVDTAGIRDTEDIVERIGVERSRKALG 300

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI------- 343
            ADLIL +   N       +K     KN D I I  K DL      +E   +I       
Sbjct: 301 EADLILFVLNYNERLTDEDRKLYEVIKNEDAIVIVNKMDLDKHLDLDEVKDMIGDMPLIQ 360

Query: 344 -SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
            S    EG+++L  +I+ +      +    +  S+ RH+  L Q    ++ A    E   
Sbjct: 361 TSMLKQEGIDQLEIQIRDLFFGGDVQNQDMTYVSNSRHISLLKQARNTIQDAIDAAESGV 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 PMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 460


>gi|322411935|gb|EFY02843.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 458

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 146/464 (31%), Positives = 261/464 (56%), Gaps = 32/464 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G  +D 
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIVDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIVDEVMVSVMLAPKTFTRENVIEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQKLLKNLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342
           ++ ADL+LL+  +N+ + ++          ++ + I +  K+DL      E + L     
Sbjct: 301 LQEADLVLLV--LNASEPLTDQDRSLLYLSQDSNRIILLNKTDLEQKI--ELEQLPADLI 356

Query: 343 -ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK- 398
            IS  T   ++ + ++I  +  +     +   +  S+ RH+  + + V+ LE  ++N+  
Sbjct: 357 PISVLTNHNIDLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGL 414

Query: 399 --DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 415 ALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|325297682|ref|YP_004257599.1| tRNA modification GTPase mnmE [Bacteroides salanitronis DSM 18170]
 gi|324317235|gb|ADY35126.1| tRNA modification GTPase mnmE [Bacteroides salanitronis DSM 18170]
          Length = 458

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 245/466 (52%), Gaps = 34/466 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL- 56
           MN +++TI A++T A   AI I+R+SGP    +   I        P   +      FG  
Sbjct: 1   MN-QQDTICAIAT-AQGGAIGIVRVSGPDAVTLTGRIFTPIGSTIPLTERKPYTLAFGHI 58

Query: 57  ---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
               G I+D+ L+ VF +P S+TGED+ E   HG   ++  ++  L      R A PGE+
Sbjct: 59  KNSKGEIIDEVLVSVFRAPHSYTGEDATEISCHGSAYILQQVMHLLIGQ-GCRTAMPGEY 117

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NGK+DL +AE++ADLI+S +E   RL+M  M G  S    +  ++L H+ S +E
Sbjct: 118 TQRAFLNGKMDLSQAEAVADLIASTSEATHRLAMNQMRGGFSRELAKLRNQLLHLTSLME 177

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGK 232
            +LDFS+ E+++ F+ +  L  +      + SH++     G  I+NG  + I+G +NAGK
Sbjct: 178 LELDFSDHEELE-FADRTELQALAAQIEQLISHLANSFHAGNAIKNGIPVAIIGETNAGK 236

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           S+L NAL K++ AIV+DI GTTRD++   + L G   +  DTAGIR+T D +E  GI+R+
Sbjct: 237 STLLNALVKEERAIVSDIHGTTRDIIEDTISLNGITFRFIDTAGIRQTQDTIEALGIERS 296

Query: 293 FLEVENADLILLLKEINSKKEISFP----------KNIDFIFIGTKSDLYSTYT----EE 338
           F  ++ A +++L+ +  S+ E +F           +    I    K DL  T T    + 
Sbjct: 297 FQAIDRAQIVILVCD-KSQGESAFQAFYRQVAGRLEGKQVIVALNKCDLADTPTFLSPQG 355

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH----LYHLSQTVRYLEMAS 394
               IS+  G+ +  L  K+  + +    +    I ++ RH    ++ L+   R  E  S
Sbjct: 356 TVIEISAKKGQNIIALQEKLVELAALPDIQTGDVIVTNARHYEALIHALAAIRRVQEGLS 415

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            N      D I+++LR     L  I G V  +++L  IF  FCIGK
Sbjct: 416 TNLSG---DFISQDLRECIFHLSDIVGDVTTDEVLGSIFEHFCIGK 458


>gi|169832370|ref|YP_001718352.1| tRNA modification GTPase TrmE [Candidatus Desulforudis audaxviator
           MP104C]
 gi|205829147|sp|B1I6S2|MNME_DESAP RecName: Full=tRNA modification GTPase mnmE
 gi|169639214|gb|ACA60720.1| tRNA modification GTPase TrmE [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 461

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 144/422 (34%), Positives = 219/422 (51%), Gaps = 23/422 (5%)

Query: 41  KKPFPRKASLRYFFG--LD---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGI 95
           +K +      R ++G  +D   G  +D+ L+ V  +P+S+T ED  E + HGG+  +  I
Sbjct: 41  EKDWRAGPGFRMYYGHAVDPGTGETVDEVLVSVMRAPKSYTREDVVEINGHGGVLPLQRI 100

Query: 96  LEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS 155
           L+ +      RLA PGEF+RRAF NG++DL++AE++ D+I + T    ++++  + G LS
Sbjct: 101 LKIVLDC-GARLAGPGEFTRRAFLNGRLDLVQAEAVLDVIRARTGSSLQVALGQLRGGLS 159

Query: 156 SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
              G   + L  + + IEA +DF EEEDV     + +   +  L+      +   + G +
Sbjct: 160 ERIGAMREALLQVLAEIEASIDFPEEEDVPETRLEALAGQLAALEAGCVELLEGAEAGRV 219

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G  + I+G  N GKSSL NAL ++  AIVTD+PGTTRDV+   +++ G  V++ DTA
Sbjct: 220 YRDGLGVAIVGKPNVGKSSLLNALLREKRAIVTDVPGTTRDVIEETVNIRGLPVRLLDTA 279

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------------ISFPKNI 320
           G+RET D VE+ G+ RT   V  AD++L++ +  S  E               +     +
Sbjct: 280 GLRETADTVERLGVARTRDAVAGADMVLVVLDAASGLEDEDRRVLALARGKPLVVLINKV 339

Query: 321 DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRH 379
           D    G   D      +    + +   G GL EL   I   +L  +       + S+ RH
Sbjct: 340 DLAPAGIDPDAVRALVDGPVLMAAIIEGRGLNELEETIAGLVLGGRVTGHHTVLISNVRH 399

Query: 380 LYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
            + L Q  RYLE A S       L++   ++R A  SLG ITG    E LLD IFS FCI
Sbjct: 400 QHALEQAGRYLEEARSALVSGMPLEMAVIDIRNALDSLGDITGETAGEDLLDRIFSHFCI 459

Query: 439 GK 440
           GK
Sbjct: 460 GK 461


>gi|82582309|sp|Q49UI4|MNME_STAS1 RecName: Full=tRNA modification GTPase mnmE
          Length = 459

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 148/460 (32%), Positives = 248/460 (53%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62
           +TI ++ST     AI I+RLSG     + + + K K+      S    +G    I+D   
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGVDAVDIADKLYKGKERLEDVTSHTINYG---HIIDPES 60

Query: 63  -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
                + ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A+PGE+++RA
Sbjct: 61  NEVVEEVMVSVLRAPKTFTREDIVEINCHGGILTINRILE-LTMTYGARMADPGEYTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS +  +    +  I + +E ++D
Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDMIKRQRQSILEILAQVEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 180 YPEYDDVEDATTEVLLGKSNEIKTEINKLLDTGTQGKIMREGLSTVIVGKPNVGKSSMLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++PGTTRD L   +++ G  +++ DTAGIR+T+DIVE+ G++R+   + 
Sbjct: 240 NLIQDNKAIVTEVPGTTRDTLEEYVNVRGVPLRLVDTAGIRDTEDIVERIGVERSRKALG 299

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI------- 343
            ADLIL +   N       +K     KN D I I  K DL      +E   +I       
Sbjct: 300 EADLILFVLNYNERLTDEDRKLYEVIKNEDAIVIVNKMDLDKHLDLDEVKDMIGDMPLIQ 359

Query: 344 -SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
            S    EG+++L  +I+ +      +    +  S+ RH+  L Q    ++ A    E   
Sbjct: 360 TSMLKQEGIDQLEIQIRDLFFGGDVQNQDMTYVSNSRHISLLKQARNTIQDAIDAAESGV 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 420 PMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|325291447|ref|YP_004267628.1| tRNA modification GTPase trmE [Syntrophobotulus glycolicus DSM
           8271]
 gi|324966848|gb|ADY57627.1| tRNA modification GTPase trmE [Syntrophobotulus glycolicus DSM
           8271]
          Length = 466

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 166/478 (34%), Positives = 259/478 (54%), Gaps = 56/478 (11%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPS-------CFQVCEFICKKKKPFPRKASLRYFFGLD 57
           ++TI A++T      I I+RLSG         CFQ      + +        L +FF  +
Sbjct: 3   EDTIVALATPPGEGGIHIVRLSGRGAGEVINHCFQPVNS-ARWQTQASHTLHLGWFFDGE 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +I D+ LL    SP S+TGED  E + HGG+  V  I+E        RLA PGEFS+RA
Sbjct: 62  TKI-DQVLLSRMLSPFSYTGEDVFEINCHGGMIPVRRIIEACLHQ-GARLAGPGEFSKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL++AE++ DLISS++E+   L++  + G LS        ++  I SFIEA +D
Sbjct: 120 FLNGKMDLVQAEAIIDLISSKSELSADLAVAQLDGALSDKVQVLRQEILDILSFIEAAID 179

Query: 178 FSEEE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           FSE+E D+  +S  E    I  +++   + ++  K G+IIR G   VI G  N GKSSL 
Sbjct: 180 FSEDEIDLLTYSQLE--ERIKSVRSKTIAILNGSKTGKIIREGLSTVIAGIPNVGKSSLL 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL +++ AIVTDIPGTTRD +   + + G L+ + DTAGIR+++D VE  GI R++  +
Sbjct: 238 NALLREERAIVTDIPGTTRDEIREYVKIGGVLLHLIDTAGIRKSNDPVEMIGINRSWKAI 297

Query: 297 ENADLILLLKEINSKK----------EISFPKNI--DFIFIGTKSDLYSTYTEEYDHLIS 344
           + AD++LLL ++  K+          E+   K+     I +  K DL S+Y  + D LI 
Sbjct: 298 DEADVVLLLLDVTDKENHSDGCLTEDELRILKDYAEKTIILYNKIDLLSSY-HKADFLIP 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS--------------------IPSHKRHLYHLS 384
           +       ++ N+IK+IL +  K++ F                     + S+ R +  + 
Sbjct: 357 A-------QVKNQIKTILFSAKKRIGFKELEAELEKRVFGGDSAVMKPMLSNLRQISEMK 409

Query: 385 QTVRYLEMASLNE--KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + +L+ A+LN    +  +D+++ ++R +   + +ITG    E LL  IF++FCIGK
Sbjct: 410 NCLNHLD-AALNSLALNIPIDLLSIDIRASLECISRITGNNVQEDLLTNIFTRFCIGK 466


>gi|197120417|ref|YP_002140844.1| tRNA modification GTPase TrmE [Geobacter bemidjiensis Bem]
 gi|197089777|gb|ACH41048.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34) modification GTPase
           [Geobacter bemidjiensis Bem]
          Length = 455

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 153/459 (33%), Positives = 237/459 (51%), Gaps = 30/459 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
           ++TI A+ST      I I+R+SGP+  Q+   I   K     K S R+ +G       G 
Sbjct: 4   RDTIAAISTPVGEGGIGIVRISGPAALQIARSIFNAKSNGGLK-SHRFSYGEVVQPGTGD 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ + +   +P S+T ED  E   HGG  VV+ IL  L      R A PGEF++RAF 
Sbjct: 63  LVDEAMAVYMKAPNSYTREDVVEIQCHGGTLVVSRILA-LVISQGSRPAEPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL++AE++ D+ISS T+    L+     G LS       + + +  +++EA +DF 
Sbjct: 122 NGRIDLVQAEAVMDVISSRTDASLALAQHQREGLLSQRISTVKEGIVYALAYVEALIDFP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+ DV      +VL  +     ++ + I+    G ++R+G  +VI G  N GKSSL N L
Sbjct: 182 ED-DVNVAVETDVLGKVAPALAELDALIAGFDEGRVLRDGVSVVIAGKPNVGKSSLLNTL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K+  AIVT +PGTTRD++   +++ G  VK+ DTAGIRE++D VE+EG++ +   +  A
Sbjct: 241 LKEKRAIVTSVPGTTRDLIEEVVNINGLPVKLLDTAGIRESEDQVEQEGVRLSLDRIPKA 300

Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
           DL+L               +L+ I SK  I      D        DL S  +      IS
Sbjct: 301 DLVLFVIDGSSAFGDEDAAILEAIGSKSCIVVRNKSDLPL---AVDLPSGCSAPV-VAIS 356

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
           + TG+G+ +L + I +     +      F   S  RH   L +    L+    N E    
Sbjct: 357 THTGDGVPQLRDAITNAFMHGHAIDGREFVALSKARHRDALLKARESLQSFVANLESGVN 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++++  +LR A  ++G++TG    + +LD IFS FCIGK
Sbjct: 417 MELLPVDLRDALDAVGEVTGETTADDVLDRIFSSFCIGK 455


>gi|85858983|ref|YP_461185.1| tRNA synthase [Syntrophus aciditrophicus SB]
 gi|123516272|sp|Q2LSF6|MNME_SYNAS RecName: Full=tRNA modification GTPase mnmE
 gi|85722074|gb|ABC77017.1| tRNA synthase [Syntrophus aciditrophicus SB]
          Length = 457

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 254/468 (54%), Gaps = 45/468 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK------KPFPRKASLRYFFGLD- 57
           K+TI A++T A    I I+R+SG     +   + K        KP       RY +  D 
Sbjct: 3   KDTIAAIATPAGTGGIGIVRISGSEAASILNLLFKSSHSVTLFKP-------RYLYHGDL 55

Query: 58  -----GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
                G+++D+ L+ +  +P S+TGED+ E + HGGI V+  +L  + +    RLA+PGE
Sbjct: 56  SDPQTGQVIDEVLVSLMKAPRSYTGEDTLEIYCHGGILVLESVLLAVLR-SGARLADPGE 114

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N +IDL +AE++ D+I + T      ++  + G+L        D+L  ++  +
Sbjct: 115 FTRRAFLNDRIDLTQAEAVGDVIMARTSKGLEAAVSHLKGQLKQKIDSLRDELIDVQVLL 174

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E+ +DF+E  DV+  S  EVL+ +  L +D+ + +S    G++ R+G  +VI G  N GK
Sbjct: 175 ESAIDFTE--DVEFPSPSEVLSKLERLSSDLEALLSTYDQGKVYRHGATVVIAGKPNTGK 232

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N L ++  AIVT +PGTTRD +   + ++G  V++ DTAGI  TDD++E EGI+  
Sbjct: 233 SSLLNCLLQEKRAIVTPVPGTTRDFIEEAISIQGVSVRMIDTAGIHPTDDLIECEGIRMV 292

Query: 293 FLEVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYTEE-------- 338
           + ++  AD ++LL    K++    +K +   +  + + +  K+DL  +  EE        
Sbjct: 293 WEKLATADGVILLLDGSKDLTDEDRKILKRLQGYNLLPVINKADLDHSLKEEDIIACFPG 352

Query: 339 YDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLE--MAS 394
            D L +S+  GEG+  L  KI  ++  K  +    +  +  RH   L +T + +   +AS
Sbjct: 353 TDPLWVSAKFGEGIAVLKEKIYDLVLEKAGEQDGDVLINSLRHKMALEKTRQQVSQALAS 412

Query: 395 LNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L E   GL  +  A ++R A  +LG+I G    E +LD IFS FCIGK
Sbjct: 413 LQE---GLSQEFAALDIREALEALGEIAGETVTEDILDRIFSSFCIGK 457


>gi|332360804|gb|EGJ38610.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK49]
          Length = 457

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 146/460 (31%), Positives = 259/460 (56%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +       +  +S+ +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTKLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           + ADL+LL+   +       ++ +   ++ + I +  K+DL      E D L      IS
Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPADAIKIS 358

Query: 345 SFTGEGLEELINKIKSIL---SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
               + ++++  +I  +    +  F++   +  S+ RH+  + + +  L+  +   E   
Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIFEQ-DATYLSNARHISLIEKALESLQAVNQGLEMGM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  ++      L +ITG    ++L+  +FS+FC+GK
Sbjct: 418 PVDLLQVDMTRTWEILSEITGDAAPDELITQLFSQFCLGK 457


>gi|158334891|ref|YP_001516063.1| tRNA modification GTPase TrmE [Acaryochloris marina MBIC11017]
 gi|205829048|sp|B0CBB0|MNME_ACAM1 RecName: Full=tRNA modification GTPase mnmE
 gi|158305132|gb|ABW26749.1| tRNA modification GTPase TrmE [Acaryochloris marina MBIC11017]
          Length = 455

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 147/443 (33%), Positives = 234/443 (52%), Gaps = 27/443 (6%)

Query: 19  AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG-----LDGRILDKGLLIVFPS 71
           +I I+RLSG     + +  F    K+ +    S R  +G     L  +I+D+GLL++  +
Sbjct: 19  SIGIVRLSGVEAVSIAKQLFQTPGKQQW---ESHRVLYGYIQQPLTQQIIDEGLLLLMLA 75

Query: 72  PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131
           P S+T ED  EFH HGG+  V  +LE   +     LA PGEF+ RAF NG++DL +AE +
Sbjct: 76  PRSYTREDVVEFHCHGGMIAVQQVLEACLQA-GAELAQPGEFTLRAFLNGRLDLTQAEGV 134

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           ADL+ + +    + ++ G+ G+L+S   +   +     + +EA +DF  E+D+       
Sbjct: 135 ADLVGARSPQAAQAALAGVQGKLASPIRELRQRCLDTLAEVEARVDF--EDDLPPLDEAG 192

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
           V  ++  +   + + ++    GE++RNG  + I+G  N GKSSL NA  + D AIVTD+P
Sbjct: 193 VQAELQDIHATLQAILATADQGELLRNGLTVAIIGRPNVGKSSLLNAWCRCDRAIVTDLP 252

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--- 308
           GTTRDV+   L + G  +++ DTAGIRET+D VE+ G+ R+    ++ADL+LL  +    
Sbjct: 253 GTTRDVVESQLVVGGIPIQVLDTAGIRETEDQVEQIGVTRSHQAAQSADLVLLTIDASVG 312

Query: 309 ---NSKKEISFPKNIDFIFIGTKSDLYS----TYTEEYDHLISSFTG--EGLEELINKI- 358
              + ++     +++  I I  K DL       Y E    ++S+     +G+ EL   I 
Sbjct: 313 WTSDDQQLYQAFQDLPLILIVNKVDLVPQEQVVYPEAIAQVVSTIAAQNQGISELETAIL 372

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSLG 417
           +++ +   K        ++R    L +    LE       D   LD    +LR A  +LG
Sbjct: 373 ETVQTQSLKAANLDWAINQRQAAALQKAQAALEHVQGAIADQLPLDFWTIDLRGAIQALG 432

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           +ITG    E +LD IFS+FCIGK
Sbjct: 433 EITGEDITESVLDRIFSRFCIGK 455


>gi|167629165|ref|YP_001679664.1| tRNA modification GTPase trme [Heliobacterium modesticaldum Ice1]
 gi|205829157|sp|B0TAB6|MNME_HELMI RecName: Full=tRNA modification GTPase mnmE
 gi|167591905|gb|ABZ83653.1| tRNA modification GTPase trme [Heliobacterium modesticaldum Ice1]
          Length = 466

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 154/474 (32%), Positives = 247/474 (52%), Gaps = 50/474 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL-----DG 58
           +TI AV+T      I I+R+SGP    V + + + +  +     AS     G      D 
Sbjct: 4   DTIAAVATPPGEGGIGIVRVSGPGARDVLKAVFRPRYGRGVDDWASHTLHLGTIIHPDDH 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R++D+ L+    +P +FT ED  EFH HGG   V   L  + +    RLA PGEF+RRAF
Sbjct: 64  RVIDEALVAWMVAPRTFTTEDVVEFHCHGGSVPVRETLGAVLRA-GARLAEPGEFTRRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD--- 175
             G++DL +AE++ ++I ++T        +G+   +S L GQ   ++  +R  + A    
Sbjct: 123 LGGRLDLAQAEAIIEVIRAKTR-------DGLGAAVSQLEGQLSRRIRKVRDDLLALLAH 175

Query: 176 ----LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
               +DF EE D+ +  S+ +  D++ ++  I   + + + G ++R G++ VI+G  N G
Sbjct: 176 LEAMIDFPEE-DLPDIGSERICTDLMQIQRQIGDMLERSRTGRVLREGWRTVIVGRPNVG 234

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NAL  +  AIVT+IPGTTRD +   +DL G  ++I DTAGIRET+D+VE+ G+++
Sbjct: 235 KSSLMNALLDEQRAIVTEIPGTTRDAIEEYIDLGGIPLRIVDTAGIRETEDVVERIGVEK 294

Query: 292 TFLEVENADLILLL----KEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHL-- 342
           T   +E ADL L++      + ++ E   +S       + +  KSDL     +E      
Sbjct: 295 TREYLEKADLALVVLDGSDSLTAEDETLLLSLAGRPAVVLV-NKSDLAVRRLDEKRLRSL 353

Query: 343 --------ISSFTGEGLEELINKIKSIL--SNKFKKLP----FSIPSHKRHLYHLSQTVR 388
                   +S+  G GL+EL   I+ ++   +     P     ++ +  RH   L ++  
Sbjct: 354 VGEMPIISVSAKEGWGLKELTELIRRMVYGDDGLGYAPDGGRLALVTQARHREALERSYA 413

Query: 389 YLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A L+    G   D +  +L+ A  +LG+ITG    E +LD IFS FCIGK
Sbjct: 414 HLRQA-LDAVAHGASPDFLTIDLKAAWEALGEITGDTVGEDILDKIFSSFCIGK 466


>gi|320109421|ref|YP_004185011.1| tRNA modification GTPase TrmE [Terriglobus saanensis SP1PR4]
 gi|319927942|gb|ADV85017.1| tRNA modification GTPase TrmE [Terriglobus saanensis SP1PR4]
          Length = 449

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 145/450 (32%), Positives = 238/450 (52%), Gaps = 21/450 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDK 63
           ++TI AVST      I I+RLSGP    + E +   +    PR+A   +     G+ +D 
Sbjct: 7   QDTIVAVSTPPGRGGIGIVRLSGPEARGITEKLLALETALEPRRARFAHLNDETGQRIDD 66

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++  F +P S+TGED  E   HG   V+  I+     +   R A+ GEF+ RAF  G+I
Sbjct: 67  AVVTFFAAPNSYTGEDVIEIAAHGSPVVLEWIVRRACTL-GARPAHAGEFTERAFFRGRI 125

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ DLI ++T  Q R++ E + G L+       + L  + + +EA +DF+E+ D
Sbjct: 126 DLTQAEAVRDLIDAQTIEQARVAAEQVGGSLAKRIRPCKEDLVALIALLEAGIDFAED-D 184

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +    S ++   +  + + +   ++    G I+R G +I ++G  NAGKSSLFNALA+++
Sbjct: 185 IDVAPSAQIEARLQAVLSPLEDLLATFAYGRILREGVRIAVIGRPNAGKSSLFNALAERE 244

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT I GTTRDV+T  + + G  V++ DTAG+RE++D VE+ GI R+   +  ADL+L
Sbjct: 245 RAIVTPIAGTTRDVVTERVSIGGIPVELMDTAGLRESEDFVEQLGIARSREALAEADLVL 304

Query: 304 LLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELIN 356
            + ++        ++ I+  +    + +  K DL      ++  +  S+ TGEGL+ L  
Sbjct: 305 FIVDLQHGISEEERETIASLEGRPHLVVANKIDLAPLLASDFALIPTSANTGEGLDRLRE 364

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM------ASLNEKDCGLDIIAENLR 410
            +   L          + ++ R    +++ V  L        AS+  +   LDI  E LR
Sbjct: 365 ALLQQLRGSQNASASGLLTNLRQRDAVARAVEALHRAIEAIHASIPHEMLLLDIY-EALR 423

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                L ++TG    +++L +IFS FCIGK
Sbjct: 424 ----GLDELTGSTTADEILGVIFSTFCIGK 449


>gi|290968160|ref|ZP_06559705.1| tRNA modification GTPase TrmE [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781835|gb|EFD94418.1| tRNA modification GTPase TrmE [Megasphaera genomosp. type_1 str.
           28L]
          Length = 459

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 151/462 (32%), Positives = 247/462 (53%), Gaps = 25/462 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRY--FF 54
           M    ETI A+ T    S + IIR+SG   F V + + +     P    R  S++Y    
Sbjct: 1   MCSTNETIAAIVTPPGESGVGIIRISGDQAFSVGDVLFRSVSAVPLAQRRDKSVQYGHIT 60

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             +G ++D+ L+++   P S+T ED  E   HGGI V+  IL  L     +RLA PGEF+
Sbjct: 61  ERNGAVIDEVLVLIMKGPHSYTAEDVLEIQCHGGIKVIQKILT-LVLEQGVRLARPGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF NG+IDL +AE++ D+I +++E     ++  + G+LS +    +  LT   + +E 
Sbjct: 120 ERAFVNGRIDLAQAEAVMDIIQAKSEAGVTRAVRQLEGKLSEVVNDMLQNLTTFITRLEV 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +D+ EE D++     ++   +  +++ +   + + + G++IR+G  +VI G  NAGKSS
Sbjct: 180 TVDYPEE-DLEEIEVPDIAGSLQEMRDALEHMLGRARTGKMIRDGITVVINGLPNAGKSS 238

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L ++D AIVT++PGTTRDV+   + L G    + DTAGIR+TDD VE+ G+ +   
Sbjct: 239 LLNRLLEEDKAIVTEVPGTTRDVIEAWITLSGIPFCLVDTAGIRKTDDKVERIGVAKARS 298

Query: 295 EVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTY----TEEYDHLI- 343
            ++ AD+ILL+ + + K +      +   K+     I  KSD+ S       E Y   + 
Sbjct: 299 YMDTADIILLVLDGSHKLQEEEKALLQEIKDKTAWVILNKSDISSLMDKKEIEAYGIPVL 358

Query: 344 --SSFTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
             S+ TG+G+E L    ++ +LS  +      + ++ RH+    Q    ++ A L+    
Sbjct: 359 SLSARTGKGIEALQKTLLRYVLSKGWDTGADVLLANVRHIEAARQAKAAMDRA-LHTLQA 417

Query: 401 GL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           GL  D+   ++R A   LG ITG      ++  IFS+FC+GK
Sbjct: 418 GLPIDLAIIDIREAWEMLGDITGQHVRADIVKEIFSRFCLGK 459


>gi|260588823|ref|ZP_05854736.1| tRNA modification GTPase TrmE [Blautia hansenii DSM 20583]
 gi|331083514|ref|ZP_08332626.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260540602|gb|EEX21171.1| tRNA modification GTPase TrmE [Blautia hansenii DSM 20583]
 gi|330404207|gb|EGG83755.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 457

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 157/459 (34%), Positives = 246/459 (53%), Gaps = 28/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-----KASLRYFFGLD-GR 59
           +TI AV+T    S I IIR+SGP   ++   I + K    R       +++Y F  D   
Sbjct: 3   DTIAAVATAMTASGIGIIRISGPKSREIAGKIYRSKGGKKRIENVPSHTIQYGFICDEDE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L++V  +P S+TGE++ E   HGG+  +  +LE + K    R A PGEF++RAF 
Sbjct: 63  IIDEVLVMVMDAPRSYTGENTVEIDCHGGVLAMKRVLETVVKY-GARPAEPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+++ E   + S+  + G +  +  +    + +  ++IE+ LD  
Sbjct: 122 NGRIDLSQAEAVIDVINAKNEYALKSSISQLRGNIQRVIKEIRQGIIYQIAYIESALDDP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +  +    +  +I  LK  ++  +   + G++++ G K VI+G  NAGKSSL N L
Sbjct: 182 EHISIDGYGDT-LKGEISLLKEKLNGLLDTVREGKLMKEGIKTVIVGKPNAGKSSLLNLL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTDI GTTRD+L   + L G  +++ DTAGIR+TDD+VEK G+K+     ++A
Sbjct: 241 VGEERAIVTDIAGTTRDILEETIVLHGISLRMIDTAGIRDTDDVVEKIGVKKAVENAKDA 300

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLISSFTG 348
           DLIL + +       N K+ I   K+   I I  K DL    TEE      +H + + + 
Sbjct: 301 DLILYVVDSSVPLDENDKEIIELLKDKKAIVILNKMDLQQQVTEEDLKEKTNHPVVAVSA 360

Query: 349 ---EGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
              EG+E L  KIK +       L F+     ++ RH   +    R LE+   + E    
Sbjct: 361 KEEEGIEFLEAKIKEMFFE--GNLSFNDEIYITNMRHKAAIEDAKRSLELVENSIEMQMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  + +L  A  +LG I G    E L++ IFSKFC GK
Sbjct: 419 EDFFSIDLMNAYEALGSIIGESVGEDLVNEIFSKFCTGK 457


>gi|56965874|ref|YP_177608.1| tRNA modification GTPase TrmE [Bacillus clausii KSM-K16]
 gi|81821939|sp|Q5WAG3|MNME_BACSK RecName: Full=tRNA modification GTPase mnmE
 gi|56912120|dbj|BAD66648.1| tRNA modification GTPase [Bacillus clausii KSM-K16]
          Length = 458

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 151/463 (32%), Positives = 249/463 (53%), Gaps = 32/463 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDG--- 58
           E +TI A+ST     AI I+RLSG     + + + K  K      S    +G  +D    
Sbjct: 2   EMDTIAAISTALGEGAIGIVRLSGDQAIAIGDKLFKGTKRLEDTPSHTIVYGHLMDDASE 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE-LAKMPNLRLANPGEFSRRA 117
             +++ ++ V  +P ++T ED  E + HGG+  VN +L+  LAK    RLA PGEF++RA
Sbjct: 62  EAIEEAMVTVMRAPRTYTREDIVEINCHGGLVSVNRVLQAVLAK--GARLAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE + DLI S+T+    +++  + G LS   G+    L    + IE ++D
Sbjct: 120 FLNGRIDLSQAEGVIDLIRSKTDRAMNVALRQVEGRLSKKIGKLRQALLETIASIEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D +  ++K +   +  +  +I + ++  K G+++R G    I+G  N GKSSL N
Sbjct: 180 YPEY-DAETMTAKLINEKMTIVLAEIEALLATAKQGKVLREGLATAIIGRPNVGKSSLMN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +L  +  AIVTDIPGTTRD L   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++
Sbjct: 239 SLVHEAKAIVTDIPGTTRDTLEEYVNVRGVPLRLIDTAGIRETEDIVERIGVERSRQALK 298

Query: 298 NADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG- 350
            ADLILL+    ++++ + E  F   K +D + I  K D       E    +    GE  
Sbjct: 299 EADLILLVLNYAEKLSKEDEALFEAVKGLDVVVIVNKIDQTGRIDMER---VRQLAGENP 355

Query: 351 -------LEELINKIKSILSNKF-----KKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNE 397
                   EE +++++  +S  F     +    +  S+ RH+  L+Q   + E A + + 
Sbjct: 356 VVATSFLQEEGVDQLEEAISRLFFAGGVEGADLTYVSNARHIGLLNQAKAHAEEAIAASL 415

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  +D+I  ++      LG+I G    + L+D +FS+FC+GK
Sbjct: 416 TDVPVDLIQIDVTRTWELLGEIIGEDVQDSLIDQLFSQFCLGK 458


>gi|13357574|ref|NP_077848.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|167971146|ref|ZP_02553423.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|168308181|ref|ZP_02690856.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|170762183|ref|YP_001752098.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|14195294|sp|Q9PRC7|MNME_UREPA RecName: Full=tRNA modification GTPase mnmE
 gi|189036215|sp|B1AI04|MNME_UREP2 RecName: Full=tRNA modification GTPase mnmE
 gi|11279575|pir||F82944 GTP-binding protein in thiophene and furan oxidation UU018
           [imported] - Ureaplasma urealyticum
 gi|6898963|gb|AAF30423.1|AE002101_6 GTP-binding protein in thiophene and furan oxidation [Ureaplasma
           parvum serovar 3 str. ATCC 700970]
 gi|168827760|gb|ACA33022.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902496|gb|EDT48785.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|186701160|gb|EDU19442.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 438

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 144/442 (32%), Positives = 236/442 (53%), Gaps = 14/442 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILDK 63
           TI A++T  +  AI IIR+SGP  F++   I   K    +K + + ++ +   D +ILD+
Sbjct: 3   TIVALATAPMNCAIHIIRVSGPKAFEIINKISTIK---IKKETFKIWYTILKDDNQILDE 59

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L+  F +P++FTGED  E + HGGI V N I++ L K    + A  GEFSRRA  N K+
Sbjct: 60  VLINTFVAPKTFTGEDLVEINCHGGIVVANLIIKTLIKY-GCQPAQRGEFSRRALLNKKM 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL + E++ +L++++ E+  +  +  + G +S    ++  +L  I   IE ++D+ E +D
Sbjct: 119 DLSKIEAINNLVNAKNELSVKGVIGALLGRVSQSIAEFRHELFMIIGQIEVNIDYPEYDD 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V+   +  +   +L L   I+  I Q K    I  G +++I+G  N GKS+L NAL  + 
Sbjct: 179 VEQVDAIILKQRLLSLDKKITKIIDQSKKFLPINKGIRVLIIGKPNVGKSTLLNALCNEQ 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDIPGTTRDV+   ++++   + I DTAGI  T+D VE  GI +    ++  DLIL
Sbjct: 239 KAIVTDIPGTTRDVIESSINIDNITLNILDTAGIHLTNDFVENLGINKAKALIDKVDLIL 298

Query: 304 LLKEINSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
            L   N ++++      K    + + TK DL   Y ++  ++  +     ++ LI++IK 
Sbjct: 299 YLIPANEQQDLELYDLIKKQKHLLVYTKKDLVDQYDDKQIYI--NAKNNDIQSLIDEIKK 356

Query: 361 IL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGK 418
           +    +F      +   +R +  L      +  A LN EK   LD+I  +L   ++ L +
Sbjct: 357 LFYVQEFDNANIDVLQSQRQIGILENVHYLINNAILNLEKGDTLDLIVADLEFCNLRLNE 416

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           + G       LD +F  FCIGK
Sbjct: 417 LLGISSEYDFLDDLFKNFCIGK 438


>gi|224538904|ref|ZP_03679443.1| hypothetical protein BACCELL_03800 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519482|gb|EEF88587.1| hypothetical protein BACCELL_03800 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 466

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 157/467 (33%), Positives = 244/467 (52%), Gaps = 35/467 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FG--LDGR 59
           ++TI A++T A   AI  IR+SG    ++   I    K     A  + +   FG   DG 
Sbjct: 4   QDTICAIAT-AQGGAIGSIRVSGADAIRITSHIFTPAKSGKTLADCKPYTLTFGKIHDGE 62

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ L+ +F +P S+TGEDS E   HG   ++  +L+ L K    RLA PGE+++RAF
Sbjct: 63  EIIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVLQLLIK-HGCRLAGPGEYTQRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S    +  ++L H  S IE +LDF
Sbjct: 122 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTKLRNQLLHFTSLIELELDF 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+ E+++     E+      ++  IS  +    +G  I+NG  + I+G +NAGKS+L N 
Sbjct: 182 SDHEELEFADRTELCRLADHIEGVISQLVHSFSVGNAIKNGVPVAIIGETNAGKSTLLNV 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRDV+    ++ G   +  DTAGIRET+D +E  GI+RTF ++E 
Sbjct: 242 LLNEDKAIVSDIHGTTRDVIEDTTNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLEQ 301

Query: 299 ADLILLL-------KEINSKKEISFPK--NIDFIFIGTKSDLYST-YTEEYDHLISSFTG 348
           A+++L +        ++N       P+      I +  K+DL  T ++ E     SS   
Sbjct: 302 AEIVLWMIDATDATSQMNQLSGQILPRLERKHLILVFNKADLLGTAHSGEVLSAASSIIP 361

Query: 349 EGLEELINKIKSILSNKFKK-------LPF-----SIPSHKRH---LYHLSQTVRYLEMA 393
           +     I+  K   ++  +K       LP       I ++ RH   L H  + +R ++  
Sbjct: 362 DAECIFISAKKRQNTDVLQKKLIAAANLPTITQNDVIVTNARHYEALTHALEAIRRVQQG 421

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             N  +   D +A+++R     L  I G V  + +L  IF  FCIGK
Sbjct: 422 LAN--NLSGDFVAQDIRECIFHLSDIAGEVTNDMVLQNIFQHFCIGK 466


>gi|228477467|ref|ZP_04062103.1| tRNA modification GTPase TrmE [Streptococcus salivarius SK126]
 gi|228250902|gb|EEK10090.1| tRNA modification GTPase TrmE [Streptococcus salivarius SK126]
          Length = 456

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 145/458 (31%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI I+RLSG     +   + K K      AS    +G    +
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDAVAIANKVFKGKN-LETVASHTINYGHIVEN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ ++ V  +P++FT ED  E + HGG+AV N IL+ L +    R+A PGEF++RA
Sbjct: 62  DETIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIR-SGARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G L  L      ++ +  + +E ++D
Sbjct: 121 FLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++  V       +  + + ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 181 YPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDD+VEK G++R+   +E
Sbjct: 241 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALE 300

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345
            ADL+LL+  +NS + ++          KN + I +  K+DL  +   EE       IS 
Sbjct: 301 EADLVLLV--LNSSEPLTEQDRTLLEISKNSNRIILLNKTDLPQAIQMEELPEDVIPISV 358

Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              E ++++ ++I  +  +     +   +  S+ RH+  + + +  LE      E    +
Sbjct: 359 LKNENIDKIEDRINQLFFDNAGLVEKDATYLSNARHISLIEKALESLEAVKQGLELGMPV 418

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 DLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456


>gi|161760545|ref|NP_907463.2| tRNA modification GTPase TrmE [Wolinella succinogenes DSM 1740]
 gi|205829217|sp|Q7M901|MNME_WOLSU RecName: Full=tRNA modification GTPase mnmE
          Length = 456

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 238/449 (53%), Gaps = 17/449 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A+ST +   A+++++LSG    ++   + ++    PR A+L   +  +  ++D+ +
Sbjct: 11  ETIIALSTPSGAGALAVVKLSGSRALEIALKLSRRDHLQPRHATLANLWNREDEMMDEAI 70

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           LI F +P S+T E+  E   HGG  +   I++E A     R+A  GEF+ RAF NG+IDL
Sbjct: 71  LIYFKAPHSYTAEEVVEIQCHGGTLIARKIIQE-ALALGARVARAGEFTYRAFLNGRIDL 129

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++  LI ++++   ++ ++ + GEL          L  I ++ E  +D++EE+   
Sbjct: 130 SQAEAIGKLIEAKSDESYKVLLKQLKGELGRYVEGVRGSLVEILAYAEVSIDYAEEDLPS 189

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +  ++ ++  I  +  D+       K    +  GYK+ I+G  N GKSSL NAL   + A
Sbjct: 190 DLEAR-MVEKIERIAEDLERIYQGSKRRSSLVEGYKLAIIGRPNVGKSSLLNALLLWERA 248

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+DIPGTTRD +   L L  + V+I DTAGIRE  D +EK GI+RT L ++ +D++L L
Sbjct: 249 IVSDIPGTTRDTIEESLHLGNHWVRIVDTAGIREAQDAIEKIGIERTLLALKESDMVLAL 308

Query: 306 --------KEINSKKEI--SFPKNIDFIFIGTKSD----LYSTYTEEYDHLISSFTGEGL 351
                    E    KE+  +  +N   + +  KSD    L  +  E Y H   S    G+
Sbjct: 309 FDSSQSLSPEDEQIKELLRAHQENRRILVLFNKSDLSRELQDSELESYPHRYISAKEGGV 368

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           EEL++ + S L  +       + S +R L  +   +  L+ A     +  L++ A +++ 
Sbjct: 369 EELLSLLASWLDEQGGGEELMLTS-ERQLLCVKSALGELKEARDRLIEGELELFAYHIQG 427

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   L  IT   +  +LLD++F +FC+GK
Sbjct: 428 ALKELSLITRPYETSELLDVMFGQFCLGK 456


>gi|238809998|dbj|BAH69788.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 450

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 148/446 (33%), Positives = 254/446 (56%), Gaps = 13/446 (2%)

Query: 6   ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDK 63
           +TI A+S+G  +  AISIIR+SG    ++   I K K    +  +  + F    + I+D+
Sbjct: 7   DTIAAISSGGKINQAISIIRVSGQDSIEIVSKIFKGKIGTNQTITYGHIFDNKTKEIIDE 66

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L+  F   ++FTGE++ E + HGG+ V N ILE L      R+A PGEFSRR+F NGK+
Sbjct: 67  VLIAWFIGNKNFTGENTVEINCHGGVLVTNRILE-LLLANGARMALPGEFSRRSFLNGKM 125

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE++ DLI ++T  Q  L+++   G+ S++   +ID+L ++   +E ++D+ E ED
Sbjct: 126 DLIKAEAINDLIHAKTLKQSELAIKKFDGKTSNMIKSFIDELAYLIGQMEINIDYPEYED 185

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
            +N  +K++++ +  L++ +S  I + +   +I +G K+ ILG  N GKSS+ N L  +D
Sbjct: 186 FENVLTKDLISRLQKLQDKLSLIIKESENSRLIFDGIKVAILGKPNVGKSSILNCLINED 245

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTD  GTTRD++     ++G L K+ DTAGIR+T+  +EK GI+++F ++E  D+++
Sbjct: 246 KAIVTDQAGTTRDLVEASYQIDGLLFKLVDTAGIRKTNRKIEKIGIEKSFEQIEKCDVVI 305

Query: 304 LLKEINS------KKEISFPK--NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            + E N+      KK     K  N   I +  K DL     ++ + +  S   + +++L 
Sbjct: 306 HVNEANTLENDYDKKVEKLAKQFNKPLIKVINKVDLLKNNKKKKNVIYVSAKNKNIDDLK 365

Query: 356 NKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
             + +I S N+     + + + +  L   + +     + S+N     +D++  ++R A  
Sbjct: 366 EALVNIFSKNEINNEEYVVNARQLALVKKAHSSISDAIESINN-GIDVDVVIIDVRQAWA 424

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            L  I+G  D E LLD +F  FC+GK
Sbjct: 425 DLVDISGRADNELLLDEMFKNFCLGK 450


>gi|168282034|ref|ZP_02689701.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|182675871|gb|EDT87776.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
          Length = 438

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 144/442 (32%), Positives = 236/442 (53%), Gaps = 14/442 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILDK 63
           TI A++T  +  AI IIR+SGP  F++   I   K    +K + + ++ +   D +ILD+
Sbjct: 3   TIVALATAPMNCAIHIIRVSGPKAFEIINKISTIK---IKKETFKIWYTILKDDNQILDE 59

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L+  F +P++FTGED  E + HGGI V N I++ L K    + A  GEFSRRA  N K+
Sbjct: 60  VLINTFVAPKTFTGEDLVEINCHGGIVVANLIIKTLIKY-GCQPAQRGEFSRRALLNKKM 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL + E++ +L++++ E+  +  +  + G +S    ++  +L  I   IE ++D+ E +D
Sbjct: 119 DLSKIEAINNLVNAKNELSVKGVIGALLGRVSQSIAEFKHELFMIIGQIEVNIDYPEYDD 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V+   +  +   +L L   I+  I Q K    I  G +++I+G  N GKS+L NAL  + 
Sbjct: 179 VEQVDAIILKQRLLSLDKKITKIIDQSKKFLPINKGIRVLIIGKPNVGKSTLLNALCSEQ 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDIPGTTRDV+   ++++   + I DTAGI  T+D VE  GI +    ++  DLIL
Sbjct: 239 KAIVTDIPGTTRDVIESSINIDNITLNILDTAGIHLTNDFVENLGINKAKALIDKVDLIL 298

Query: 304 LLKEINSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
            L   N ++++      K    + + TK DL   Y ++  ++  +     ++ LI++IK 
Sbjct: 299 YLIPANEQQDLELYDLIKKQKHLLVYTKKDLVDQYDDKQIYI--NAKNNDIQSLIDEIKK 356

Query: 361 IL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGK 418
           +    +F      +   +R +  L      +  A LN EK   LD+I  +L   ++ L +
Sbjct: 357 LFYVQEFDNANIDVLQSQRQIGILENVHYLINNAILNLEKGDTLDLIVADLEFCNLRLNE 416

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           + G       LD +F  FCIGK
Sbjct: 417 LLGISSEYDFLDDLFKNFCIGK 438


>gi|308190244|ref|YP_003923175.1| thiophene and furan oxidation protein [Mycoplasma fermentans JER]
 gi|319777612|ref|YP_004137263.1| tRNA modification gtpase mnme [Mycoplasma fermentans M64]
 gi|307624986|gb|ADN69291.1| thiophene and furan oxidation protein [Mycoplasma fermentans JER]
 gi|318038687|gb|ADV34886.1| tRNA modification GTPase mnmE [Mycoplasma fermentans M64]
          Length = 447

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 148/446 (33%), Positives = 254/446 (56%), Gaps = 13/446 (2%)

Query: 6   ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDK 63
           +TI A+S+G  +  AISIIR+SG    ++   I K K    +  +  + F    + I+D+
Sbjct: 4   DTIAAISSGGKINQAISIIRVSGQDSIEIVSKIFKGKIGTNQTITYGHIFDNKTKEIIDE 63

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L+  F   ++FTGE++ E + HGG+ V N ILE L      R+A PGEFSRR+F NGK+
Sbjct: 64  VLIAWFIGNKNFTGENTVEINCHGGVLVTNRILE-LLLANGARMALPGEFSRRSFLNGKM 122

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE++ DLI ++T  Q  L+++   G+ S++   +ID+L ++   +E ++D+ E ED
Sbjct: 123 DLIKAEAINDLIHAKTLKQSELAIKKFDGKTSNMIKSFIDELAYLIGQMEINIDYPEYED 182

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
            +N  +K++++ +  L++ +S  I + +   +I +G K+ ILG  N GKSS+ N L  +D
Sbjct: 183 FENVLTKDLISRLQKLQDKLSLIIKESENSRLIFDGIKVAILGKPNVGKSSILNCLINED 242

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTD  GTTRD++     ++G L K+ DTAGIR+T+  +EK GI+++F ++E  D+++
Sbjct: 243 KAIVTDQAGTTRDLVEASYQIDGLLFKLVDTAGIRKTNRKIEKIGIEKSFEQIEKCDVVI 302

Query: 304 LLKEINS------KKEISFPK--NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            + E N+      KK     K  N   I +  K DL     ++ + +  S   + +++L 
Sbjct: 303 HVNEANTLENDYDKKVEKLAKQFNKPLIKVINKVDLLKNNKKKKNVIYVSAKNKNIDDLK 362

Query: 356 NKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
             + +I S N+     + + + +  L   + +     + S+N     +D++  ++R A  
Sbjct: 363 EALVNIFSKNEINNEEYVVNARQLALVKKAHSSISDAIESINN-GIDVDVVIIDVRQAWA 421

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            L  I+G  D E LLD +F  FC+GK
Sbjct: 422 DLVDISGRADNELLLDEMFKNFCLGK 447


>gi|229829511|ref|ZP_04455580.1| hypothetical protein GCWU000342_01603 [Shuttleworthia satelles DSM
           14600]
 gi|229791942|gb|EEP28056.1| hypothetical protein GCWU000342_01603 [Shuttleworthia satelles DSM
           14600]
          Length = 482

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 161/483 (33%), Positives = 251/483 (51%), Gaps = 49/483 (10%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL------- 56
           + +TI AV+T    + I IIR+SGP    + + + + KK      S    +G        
Sbjct: 3   QGDTIAAVATAMSNAGIGIIRISGPDAIAIADSVFRGKKALAEMESHTISYGHIVEDKGK 62

Query: 57  ------------DGRI--LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102
                        G++  +D+ L+ VF +P ++T ED  E + HGGI ++  IL  L   
Sbjct: 63  TGGISEGEGTKDTGQVCLIDEVLVSVFRAPRTYTREDLVEINCHGGILILQKILRLLFSC 122

Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162
              R A PGEF++RAF NG+ID+ +AES+ DLI +++E+  R SME +SG LS       
Sbjct: 123 -GARPAEPGEFTKRAFLNGRIDMAQAESVMDLIHAQSELAIRNSMEQLSGALSCRIRDMR 181

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
           +KL +  +FIE+ LD  E  D+  +S K + N +  L   +   ++  K G  +R+G   
Sbjct: 182 EKLLYEIAFIESALDDPEHYDLDGYSDK-LRNQVENLSAALERLLASSKEGSYLRDGILT 240

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  NAGKSSL NALA +D AIVTDIPGTTRD L   + L    +++ DTAGIRE++D
Sbjct: 241 AIVGRPNAGKSSLLNALAGRDRAIVTDIPGTTRDTLEERVRLGNLALRLIDTAGIRESED 300

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID----------FIFIGTKSDLY 332
            +E+ G+++    +E ADLI+ + + +   E    K ++           I +  K DL 
Sbjct: 301 RIEQIGVEKARKSMEEADLIIFVMDASLPLENEDCKMLNQLSSHGYLEHSIILLNKMDLT 360

Query: 333 STYTEEY----------DHL--ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRH 379
           S  + E           D +  +S+   EGL+ L + I+ +  + + ++    + ++ RH
Sbjct: 361 SILSAEQIQQVLPQLNPDRILSVSARREEGLDLLASAIERMFFTGQVRENQEILITNARH 420

Query: 380 LYHLSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437
            Y L +  + L++  L   D G+  D +  +L      LG ITG    + L D IFSKFC
Sbjct: 421 TYALQEARKALDLV-LEGIDQGITEDFLTVDLMNCYEQLGLITGETLEDDLADEIFSKFC 479

Query: 438 IGK 440
           +GK
Sbjct: 480 MGK 482


>gi|323465554|gb|ADX77707.1| tRNA modification GTPase TrmE [Staphylococcus pseudintermedius
           ED99]
          Length = 460

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 151/463 (32%), Positives = 250/463 (53%), Gaps = 35/463 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLDGRILD 62
           +TI ++ST     AI I+RLSG    ++ + + K K   K  P   ++ Y     G I+D
Sbjct: 5   DTITSISTPMGEGAIGIVRLSGHDAVEIADKLYKGKHLLKDVPTH-TINY-----GHIID 58

Query: 63  --------KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                   + ++ V  +P +FT ED  E + HGGI  +N +LE L      R+A PGE++
Sbjct: 59  PETEEVVEEVMVSVLRAPRTFTREDIVEINCHGGILTINRVLE-LTMTYGARMAEPGEYT 117

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E 
Sbjct: 118 KRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEV 177

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV++ +++ +L     +K +I   +  G  G+I+R G   VI+G  N GKSS
Sbjct: 178 NIDYPEYDDVEDATTEFLLERSQEIKLEIQKLLDTGVQGKIMREGLSTVIVGKPNVGKSS 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           + N L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVE+ G++R+  
Sbjct: 238 MLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRK 297

Query: 295 EVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI---- 343
            +  ADLIL +   N       +K     KN D I I  K+DL       E + ++    
Sbjct: 298 ALSEADLILFVLNYNEPLTEDDRKLYEVIKNEDAIVIINKTDLEQRLDLAEVETMVGDMP 357

Query: 344 ----SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNE 397
               S    +G++EL  +I+ +    + +    +  S+ RH+  L Q    ++ A    E
Sbjct: 358 IIQTSMLQQQGIDELEIQIRDLFFGGEVQSQDMTYVSNSRHISLLKQAKNAIQDAIDAAE 417

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  +L      LG+I G    E+L+D +FS+FC+GK
Sbjct: 418 MGVPMDMVQIDLTRTWEILGEIIGESASEELIDQLFSQFCLGK 460


>gi|312144699|ref|YP_003996145.1| tRNA modification GTPase TrmE [Halanaerobium sp. 'sapolanicus']
 gi|311905350|gb|ADQ15791.1| tRNA modification GTPase TrmE [Halanaerobium sp. 'sapolanicus']
          Length = 464

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 253/466 (54%), Gaps = 37/466 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-----KKKPFPRKASLRYFFGLDG- 58
           ++TI A++T         IR+SGP  +++ + I +     KK       +  Y F  D  
Sbjct: 6   EDTIAAIATPFGTGGTGKIRISGPEAYEIGDKIFRSVQEGKKIKDAETYTAHYGFIYDPV 65

Query: 59  --RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ + I+   P SFTGE+  EF  HGG+  +  +LE L      RLA PGEFS+R
Sbjct: 66  EEKKIDEVVAIMMRKPRSFTGENVLEFDCHGGMTPLRAVLE-LVLASGARLAEPGEFSQR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ D+I+S+TE    +++E +SG+LS    +  +    + + +EA +
Sbjct: 125 AFLNGRIDLAQAEAIIDIINSKTEKSLDIAVEQLSGKLSQRVDEIKEIAVEVLAHLEAAI 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E+E ++ FS +++ +   ++K +I   +   + G+I + G K VI+G  N GKSSL 
Sbjct: 185 DYPEDE-IEGFSPEKLDDKFNYIKEEIEKLLLSSRQGKIYKEGLKTVIVGKPNVGKSSLL 243

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N   ++  AIVTDIPGTTRDV+   ++L+G  +KI DTAGIRET D VEK G++RT    
Sbjct: 244 NYFLEEKRAIVTDIPGTTRDVIEEYVNLKGIPLKIIDTAGIRETADKVEKIGVERTRKSA 303

Query: 297 ENADLILLLKEIN---SKKEISFPKNID---FIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
           E ADL+L + +I+   +++++   K I     I I  K+DL +   E+ D +   F    
Sbjct: 304 EKADLVLFMLDISQGLTEEDLQIYKLIKDKPVIVIVNKTDLPA--QEDRDKIEQEFKEHN 361

Query: 351 L---------------EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
           L               ++++N+   IL  +       I +  RH   L +  + +E   +
Sbjct: 362 LLWISLLEEKGLEELRQKILNE---ILDEELSGDDNVIITKSRHKNALLKAKKAVERVIV 418

Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + E     D +  +L+    +LG+ITG    + ++D IFS FC+GK
Sbjct: 419 SRETSMPYDFLTIDLKDCLNALGEITGETVADDIIDRIFSDFCLGK 464


>gi|213962698|ref|ZP_03390959.1| tRNA modification GTPase TrmE [Capnocytophaga sputigena Capno]
 gi|213954693|gb|EEB66014.1| tRNA modification GTPase TrmE [Capnocytophaga sputigena Capno]
          Length = 471

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 154/472 (32%), Positives = 255/472 (54%), Gaps = 42/472 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL---D 57
           +  +TI A++T +   AI++IRLSG +  ++ + I K   KK      S     G+    
Sbjct: 8   YNSDTIVALATASGMGAIAVIRLSGANAIEIADQIFKSYSKKSLVDAPSHTVHLGILEAK 67

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM---PNLRLANPGEFS 114
            +++D+ L  +F   +S+TGE   EF  HG     N I+EE+ K+      RLA  GEF+
Sbjct: 68  NQVIDECLATIFKGTKSYTGEPVVEFSCHGS----NYIVEEVIKLCLANGTRLAEAGEFT 123

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+ L +AE++ADLI+S+++   +++++ M G  +S       +L +  S IE 
Sbjct: 124 KRAFLNGKLALNQAEAVADLIASDSKASHQVALQQMRGGFTSEIEALRQELLNFASLIEL 183

Query: 175 DLDFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           +LDFSEE DV+ F+ +     +L  +K  +SS I    +G +++NG  + I+G  NAGKS
Sbjct: 184 ELDFSEE-DVE-FADRSQFKSLLKTIKTTLSSLIQSFSVGNVLKNGIPVAIVGKPNAGKS 241

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           +L NAL  ++ AIV+DI GTTRD +   L + G   +  DTAGIR+T D +E  G+++  
Sbjct: 242 TLLNALLNEERAIVSDIAGTTRDTIEETLHIGGIAFRFIDTAGIRDTQDQIEAIGVQKAK 301

Query: 294 LEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-DHLIS 344
            ++E A +IL L         EI +  + ++ +   ++ +  K+DL    T  + D ++ 
Sbjct: 302 EKIEKASVILFLFDDKDNTVSEITTFVKENYREGTKYVLLHNKTDLSPEETTAFDDEILQ 361

Query: 345 SFTG-----------EGLEELINKIKSILSNKFKKLPF----SIPSHKRHLYHLSQTVRY 389
           S  G           EG  + I ++K  L++  + L      ++ ++ RH   LS  ++ 
Sbjct: 362 SLKGYTDTLLRISAKEG--QNITELKRFLADYAQTLSHIGKATVVTNIRHYEALSNALQA 419

Query: 390 LEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +E      +     D++A ++R     LG ITG V  E++L  IFS+FCIGK
Sbjct: 420 IEKVEEGMQMHLSGDLLAIDIRETLYHLGSITGEVSNEEVLGNIFSRFCIGK 471


>gi|116334862|ref|YP_796389.1| tRNA modification GTPase TrmE [Lactobacillus brevis ATCC 367]
 gi|122268459|sp|Q03N64|MNME_LACBA RecName: Full=tRNA modification GTPase mnmE
 gi|116100209|gb|ABJ65358.1| tRNA modification GTPase, TrmE [Lactobacillus brevis ATCC 367]
          Length = 464

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 155/479 (32%), Positives = 254/479 (53%), Gaps = 63/479 (13%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---G 58
           E +TI A+ST      ISIIRLSG   FQV   + K      +  S    +G  LD   G
Sbjct: 7   EFDTIAAISTPPGEGGISIIRLSGEEVFQVAAKLFKGAD-LTQVGSHTIHYGHILDPETG 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ ++ V  +P+++T ED  E + HGGI   N IL+ L      RLA PGE+++RAF
Sbjct: 66  DEVDEVMVTVMRAPKTYTKEDIIEINCHGGIVATNRILQ-LCLSYGARLAEPGEYTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AES+ DLI ++T+   +++++ + G+LS L       +    + +E ++D+
Sbjct: 125 LNGRIDLTQAESVMDLIRAKTDKSMKVALDQLDGDLSKLIRNLRQDILDALAQVEVNIDY 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  ++K +L     +K  I + ++  K G+++R G    I+G  N GKSSL N 
Sbjct: 185 PEYDDVETMTTKMLLEKAHEVKQQIKTLLATAKQGKVLREGLATAIVGRPNVGKSSLLNH 244

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVTD+ GTTRDV+   ++++G  +K+ DTAGIR+T D VEK G++R+   +  
Sbjct: 245 LLHEDKAIVTDVAGTTRDVIEEYVNVKGVPLKLIDTAGIRDTTDKVEKIGVERSRKAINT 304

Query: 299 ADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSD---------------------- 330
           ADL++L+    + + ++ E  ++  K+   I I  K+D                      
Sbjct: 305 ADLVMLVLNASEPLTAEDEALLTATKDTQRILILNKTDLPLQLDLAAVRQVAGDSPIIET 364

Query: 331 --LYSTYTEEYDHLISS-FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
             L ST  ++ +  I+  F  EG+E   N +              + ++ RH+  L Q  
Sbjct: 365 SILQSTGMDQLEETIAHLFFDEGIESSQNTV--------------MVTNARHIGLLHQA- 409

Query: 388 RYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                A+L++   G+      D++  ++  A   LG+ITG    ++LLD +FS+FC+GK
Sbjct: 410 ----SAALDDVQNGIAAGMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK 464


>gi|319947147|ref|ZP_08021381.1| thiophene and furan oxidation protein ThdF [Streptococcus australis
           ATCC 700641]
 gi|319747195|gb|EFV99454.1| thiophene and furan oxidation protein ThdF [Streptococcus australis
           ATCC 700641]
          Length = 457

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 145/459 (31%), Positives = 258/459 (56%), Gaps = 22/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F++ + I K K      + +L Y   +D  
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFKIAQKIFKGKDLTSVASHTLNYGHIVDPD 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ L      RLA PGEF++R
Sbjct: 62  KDEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LVIREGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +++ +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEATTEIIREKTTEFEALLTNLLKTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVERIGVERSRKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE---YDHL-ISSF 346
           + ADL+LL+   +       ++ +   ++ + I +  K DL      +    DH+ IS  
Sbjct: 301 KEADLVLLVLNASEPLTDQDRQLLEISQDSNRIILLNKVDLPQQIELDEIPADHIKISVL 360

Query: 347 TGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCG 401
             + + ++ ++I ++   +    +   +  S+ RH+  + + V  L+  ++NE       
Sbjct: 361 KNQNINQIEDRINALFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLAMGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 VDLLQVDLTRTWEILGEITGDATPDELITQLFSQFCLGK 457


>gi|163742610|ref|ZP_02149996.1| tRNA modification GTPase [Phaeobacter gallaeciensis 2.10]
 gi|161384195|gb|EDQ08578.1| tRNA modification GTPase [Phaeobacter gallaeciensis 2.10]
          Length = 341

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/348 (39%), Positives = 199/348 (57%), Gaps = 9/348 (2%)

Query: 95  ILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL 154
           +L+ L +  ++RL++PGEF+RRA ENGK+DL + E+LADLI +ETE QR  +   ++G L
Sbjct: 1   MLDLLGQFEDVRLSDPGEFTRRALENGKLDLSQVEALADLIDAETEAQRVQAQAVLAGGL 60

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
           + L  +W   L    S IE  +DF++E DV    +KEV   +  +  D+   I+  K+ E
Sbjct: 61  ADLAERWRKDLIRAASLIEVTIDFADE-DVPVDVTKEVKELLAGVMADLEPQIAGVKMAE 119

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
            IR+G+++ I+G  N GKS+L NALA ++ AI ++  GTTRDV+ + +DL G  V + DT
Sbjct: 120 RIRSGFEVAIIGAPNVGKSTLLNALAGREAAITSEYAGTTRDVIEVRMDLAGLPVTLLDT 179

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334
           AG+R+TDD VE  GIK      E ADL + L E   +  I    + D I +  K+DL   
Sbjct: 180 AGLRKTDDHVEGIGIKMAKERAEKADLRVFLTE--DRAAIDIDISEDDIVVAPKADLVGD 237

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
              +    +S  TG+G++ LI  I  +L N+  K+   I +  RH   +      L+ A 
Sbjct: 238 GVPQ--KAVSGKTGQGIDMLITDITKVLRNRAGKV--GIATRARHRETMKTAYDRLQSAQ 293

Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L       D+ AE++R A  SL  + G V VE LLD IFS FC+GK
Sbjct: 294 DVLRYGPEYYDVAAEDMRSAIRSLEMLVGRVGVENLLDEIFSSFCLGK 341


>gi|226315527|ref|YP_002775423.1| tRNA modification GTPase [Brevibacillus brevis NBRC 100599]
 gi|226098477|dbj|BAH46919.1| probable tRNA modification GTPase [Brevibacillus brevis NBRC
           100599]
          Length = 458

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 249/460 (54%), Gaps = 30/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           +TI AV+T      I++IR+SG    +V + I K K+      S    +G       G  
Sbjct: 4   DTIAAVATPMGEGGIAVIRVSGTEAIEVVDKIYKGKQRLSTVDSHTIHYGHLYEPNTGER 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ L+ V  +P +FT ED  E + HGGI  V  +LE L      RLA PGEF++RAF N
Sbjct: 64  VEEVLVSVMKAPRTFTREDVVEVNCHGGIVSVEKVLE-LILDNGARLAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ DLI ++T+   ++++  + G+LS L  Q    L    + IE  LD+ E
Sbjct: 123 GRVDLSQAEAVIDLIRAKTDRAMKVALNQVEGKLSRLIRQLRQNLIEAMAHIEVTLDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             DV+ F+   +    L +K +I   +   + G+I+R G    I+G  N GKSSL N+L 
Sbjct: 183 H-DVEEFTQNFLRGKCLEVKGEIQRLLQTAQQGKILREGLSTAIIGRPNVGKSSLLNSLV 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTD+ GTTRDV+   +++ G  +++ DTAGIR+T+DIVEK G++++   ++ AD
Sbjct: 242 QEEKAIVTDVAGTTRDVIEEYVNVRGVPLRLIDTAGIRDTEDIVEKIGVEKSRQLLQKAD 301

Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYST---------YTEEYDHLI 343
           L+LL+  IN  + +S          K    I I  K DL            + ++   + 
Sbjct: 302 LVLLV--INYNEPLSADDYAIFEAAKGFHVIVIVNKFDLPQKVDLEEIKRHFPQQPLIMT 359

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDC 400
           S+    G++ L   I  I  S + ++   +  S+ RH+  L Q  R ++  +  ++E   
Sbjct: 360 SAREETGIDLLEQAIGEIFFSGRVQQDDLTYVSNARHIQLLRQAERAMDEALGGIDEL-M 418

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D+I  +++ +   LG++ G    E L+D IFS+FC+GK
Sbjct: 419 PVDMIQIDIKKSWELLGEVIGESVGEDLIDQIFSQFCLGK 458


>gi|301064536|ref|ZP_07204932.1| tRNA modification GTPase TrmE [delta proteobacterium NaphS2]
 gi|300441284|gb|EFK05653.1| tRNA modification GTPase TrmE [delta proteobacterium NaphS2]
          Length = 461

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 160/471 (33%), Positives = 242/471 (51%), Gaps = 41/471 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           M   ++TI A++T    + I IIR+SGP   +  E I K K P     S R + G     
Sbjct: 1   MPSTEDTIAAIATPVGQAGIGIIRISGPDSLETAEKIFKPKTPHTALKSHRLYMGYVYDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ LL    +P S+T ED  E + H G  ++  IL  L  +   RLA PGEF++
Sbjct: 61  DSGKVIDEVLLSYMAAPNSYTREDVVEINSHSGYTLLFKILTILTGL-GARLARPGEFTQ 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DL+++ +E    L+ + + G +         +  HI +  EA 
Sbjct: 120 RAFLNGRIDLSQAEAVVDLMNARSERGLALAAQQIQGAIKRDMLALRKEAVHILANAEAA 179

Query: 176 LDFSEEEDVQNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           +DF EE+    F S+  E +   L    DI   + +     +  +G   VI G  N+GKS
Sbjct: 180 IDFPEEDIEHLFRSEGAETIQKQLIHPIDI---LIKAHAERVWVDGINTVIAGRVNSGKS 236

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N L  +  AIVTDIPGTTRDV+    ++ G  ++I DTAGIR+ +D VEK GI    
Sbjct: 237 SLLNRLLNETKAIVTDIPGTTRDVIEATFNVGGIPIRIMDTAGIRKVNDTVEKMGIDLAL 296

Query: 294 LEVENADLIL---------------LLKEINSKK------EISFPKNIDFIFIGTKSDLY 332
            +   ADL+L               LL++  +KK      +I  P   DF     K+D  
Sbjct: 297 QKTAEADLLLFVIDRSRPINRDDMDLLEQGENKKALVVMNKIDLPPAPDF---AEKADSL 353

Query: 333 STYTEEYDHLISSFTGEGLEELINKIK-SILSNKFKKLPFS--IPSHKRHLYHLSQTVRY 389
           S ++      IS+ TGEG++ L   IK +ILS+  +    S  +P+ +     L    ++
Sbjct: 354 SRFSVLE---ISALTGEGIDHLKEAIKDTILSDNAQTSATSRAVPNLRHRQALLKARDQF 410

Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L  +    K+  ++I+A  LR     LG+ITG    +++LD IFS+FC+GK
Sbjct: 411 LCASKSARKNIPMEIVAFELRNGLDHLGEITGETIDDEILDSIFSQFCMGK 461


>gi|312862786|ref|ZP_07723026.1| tRNA modification GTPase TrmE [Streptococcus vestibularis F0396]
 gi|311101646|gb|EFQ59849.1| tRNA modification GTPase TrmE [Streptococcus vestibularis F0396]
          Length = 456

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 145/458 (31%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI I+RLSG     +   + K K       S    +G    +
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDAVAIANKVFKGKN-LESVTSHTINYGHIVEN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ ++ V  SP++FT ED  E + HGG+AV N IL+ L +    R+A PGEF++RA
Sbjct: 62  DETIDEVMVSVMRSPKTFTREDVVEINTHGGVAVTNEILQLLIR-SGARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G L  L      ++ +  + +E ++D
Sbjct: 121 FLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++  V       +  + + ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 181 YPEYDDVEEVTTALVREKTQDFQALLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDD+VEK G++R+   +E
Sbjct: 241 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALE 300

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345
            ADL+LL+  +NS + ++          KN + I +  K+DL  +   EE       IS 
Sbjct: 301 EADLVLLV--LNSSEPLTEQDRTLLEISKNSNRIILLNKTDLPQAIQMEELPEDVIPISV 358

Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              E ++++ ++I  +  +     +   +  S+ RH+  + + +  LE  +   E    +
Sbjct: 359 LKNENIDKIEDRINQLFFDNAGLVEKDATYLSNARHISLIERALESLEAVNQGLELGMPV 418

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 DLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456


>gi|42563304|ref|NP_177924.3| tRNA modification GTPase, putative [Arabidopsis thaliana]
 gi|51536472|gb|AAU05474.1| At1g78010 [Arabidopsis thaliana]
 gi|52421301|gb|AAU45220.1| At1g78010 [Arabidopsis thaliana]
 gi|332197936|gb|AEE36057.1| putative tRNA modification GTPase [Arabidopsis thaliana]
          Length = 560

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 157/473 (33%), Positives = 243/473 (51%), Gaps = 44/473 (9%)

Query: 7   TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-----------LRYF 53
           TI A+ T  G  P A+ I+RLSGP   +V   + +  K   +K S           + Y 
Sbjct: 93  TIVAIVTPIGGPPGAVGIVRLSGPKAVEVARRVFRSAKKTKKKESDSDTWRPKSHFVEYG 152

Query: 54  FGLD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
             +D  G ++D+ L +   +P S+T ED  E   HG    +  +L    +    RLA PG
Sbjct: 153 AVVDSNGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCVEA-GARLAEPG 211

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+ RAF NG++DL +AE++  LIS+++      ++EG+ G  SSL      +   + + 
Sbjct: 212 EFTLRAFLNGRLDLSQAENVEKLISAKSSAAADAALEGIQGGFSSLVKSLRAQCIELLTE 271

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           IEA LDF  E+++     + V+N I  +  D+ S +      +++++G +I I+G  N G
Sbjct: 272 IEARLDF--EDEMPPLDIESVINKITSMSQDVESALDTANYDKLLQSGLQIAIVGRPNVG 329

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NA +K + AIVT++ GTTRDV+  ++ + G  + + DTAGIRET+DIVEK G++R
Sbjct: 330 KSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDTAGIRETNDIVEKIGVER 389

Query: 292 TFLEVENADLIL---------------LLKEINSKKEISFPKN-IDFIFIGTKSDLYSTY 335
           +    + AD+I+               LL++I S K +    N ID    G+   L    
Sbjct: 390 SETAAKVADVIIMAVSAVEGWTEEDTELLRKIQSDKPMILVMNKIDCAPPGSCDQLEDQR 449

Query: 336 -TEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
             EE  H     S+ TG+G+EEL + I  IL     ++P        +     Q VR  E
Sbjct: 450 KKEEVFHKSVFTSAVTGQGIEELEDAILEILG--LDRVPTGGHQWTVNQRQCEQLVRTKE 507

Query: 392 ----MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +    E +  +D     LR A++SL +I+G    E++L  IF+KFCIGK
Sbjct: 508 ALVRLREAIEDEIPIDFWTIELREAALSLAQISGQDVSEEVLSSIFAKFCIGK 560


>gi|294505869|ref|YP_003569927.1| tRNA modification GTPase trmE [Salinibacter ruber M8]
 gi|294342197|emb|CBH22975.1| tRNA modification GTPase trmE [Salinibacter ruber M8]
          Length = 461

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 148/464 (31%), Positives = 248/464 (53%), Gaps = 32/464 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGR 59
           + +TI A++T    +A++++R SGP+  ++ +  C +        S     G+     G 
Sbjct: 3   QSDTIAAIATARGRAALAVVRTSGPAAIEIVDR-CFRGDALTDADSHTAHVGVLTDEAGT 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  VF +P S TGE   E   HGG       L+ L      R+A PGEF+ RAF 
Sbjct: 62  DIDQVVATVFRAPNSATGEHVVEVSCHGGDLAPKMALQSLLDH-GARMAEPGEFTERAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI + +    + S+  + G  S L G   ++L ++ S +E ++DFS
Sbjct: 121 NGKMDLAQAEAVADLIDATSTKAHQASLTHLKGRYSDLLGDLREELLNLCSLVELEIDFS 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDI-SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E DV+ F+ +E L D+L    +I    +     GE +++G ++VI G  NAGKS+L NA
Sbjct: 181 DE-DVE-FADRERLEDLLDETEEILGDLLDTYPTGEKLKDGVQVVIGGRPNAGKSTLLNA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L   D AIV++ PGTTRD +  + ++EG L +  DTAG+R+T D +E EG++R    +E 
Sbjct: 239 LVGHDRAIVSETPGTTRDEIEAEAEIEGVLFRFVDTAGLRDTADEIEAEGVRRATESIEE 298

Query: 299 ADLILLLKEIN---SKKEISFPK-------NIDFIFIGTKSD---------LYSTYTEEY 339
           AD++  L ++      +EI+F +       ++  + IG K+D         L    + + 
Sbjct: 299 ADVLFYLYDLTVGLDSQEIAFLQDLAADGSDVQPVVIGNKADRAPDLPVATLDGLTSLKL 358

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLNEK 398
             L +    + ++ L++ +   ++    +   S +  ++RH  HL   +  ++ A     
Sbjct: 359 SALKAREDADEVQPLLDHLTDTVAEHLSRAEASPVVMNQRHRQHLRDALDAVQQAR-EAL 417

Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D G+  D++  +LR A   LG ITG +  E +LD IFS+FCIGK
Sbjct: 418 DAGVSGDMLTLDLRAALQELGAITGEITNEDVLDQIFSRFCIGK 461


>gi|312885532|ref|ZP_07745170.1| tRNA modification GTPase trmE [Mucilaginibacter paludis DSM 18603]
 gi|311302000|gb|EFQ79031.1| tRNA modification GTPase trmE [Mucilaginibacter paludis DSM 18603]
          Length = 468

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 161/468 (34%), Positives = 255/468 (54%), Gaps = 44/468 (9%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRI- 60
           ++ETI A++T     AI IIRLSGP    +   + K K    ++AS    FG  +DG + 
Sbjct: 14  KEETIVALATPNGTGAIGIIRLSGPDAIAIANSVFKGKD-LTQQASHTIHFGNIVDGEVV 72

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L  VF +P+S+T E+  E   HG   ++  I++   +    R A PGEF+ RAF N
Sbjct: 73  LDEVLASVFIAPKSYTRENVVEISCHGSAYIIESIIKLFIRQ-GARGAKPGEFTLRAFIN 131

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ADLI+S ++  ++++M+ + G  S+   Q  D+L    S IE +LDFSE
Sbjct: 132 GQLDLSQAEAVADLIASNSKASQQVAMQQLRGGYSNQLKQLRDQLVTFASLIELELDFSE 191

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSSLF 236
           E DV+ F+++  L  ++    DIS  I+Q     +LG  I++G   VI G  NAGKS+L 
Sbjct: 192 E-DVE-FANRGQLKQLVV---DISKMINQLIQSFELGNAIKHGVNTVIAGRPNAGKSTLL 246

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  +D AIV+ I GTTRD +   L++ G   ++ DTAG+RE  D +E  G+++T  ++
Sbjct: 247 NALLNEDRAIVSHIAGTTRDTIEEILNINGINFRLVDTAGLREATDTIEAIGVQKTLEKI 306

Query: 297 ENADLILLL--KEINSKKEISFP------KNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
             + L+L +   E  +  +++          +  + +  K DL S        L + F  
Sbjct: 307 SQSALLLYVFDAEAMTGADVALDLENLLHPGVPVVAVANKIDLLSD-----GKLAAGFNL 361

Query: 349 EGLEEL----------INKIKSILSNKFKKLPF----SIPSHKRHLYHLSQTVRYLEMAS 394
               EL          I+++K ++ N   +       ++ ++ RHL  L +T + L +  
Sbjct: 362 PAEVELITVSAREKQHIDQLKQVIYNSAVQGKLTGNETLVTNIRHLEALQKTEQAL-VRV 420

Query: 395 LNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LN  D  +  D +A +++ A   LG+ITG V  + LLD IFSKFCIGK
Sbjct: 421 LNGIDNPITSDFLAMDIKQALHYLGEITGSVTTDDLLDNIFSKFCIGK 468


>gi|306833320|ref|ZP_07466448.1| tRNA modification GTPase TrmE [Streptococcus bovis ATCC 700338]
 gi|304424517|gb|EFM27655.1| tRNA modification GTPase TrmE [Streptococcus bovis ATCC 700338]
          Length = 457

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 152/465 (32%), Positives = 261/465 (56%), Gaps = 34/465 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           + +E +TI A+ST     AI I+RLSG     + + +   K      AS    +G  +D 
Sbjct: 2   ITNEFDTIAAISTPLGEGAIGIVRLSGTEALAIAQKVYHGKD-LNEVASHTINYGHIVDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               +LD+ ++ V  +P++FT E+  E + HGG+AV N IL+ L      RLA PGEF++
Sbjct: 61  DTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEILQ-LVLRQGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   
Sbjct: 240 LNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKA 299

Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342
           +E ADL+LL+  +NS + ++          K+ + I +  K+DL      E D L     
Sbjct: 300 LEEADLVLLV--LNSSEPLTDQDRALLELSKDSNRIILLNKTDLPEKI--EADQLPDDVI 355

Query: 343 -ISSFTGEG---LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            IS    +    +EE IN++    +   +K   +  S+ RH+  + + V+ L+  ++NE 
Sbjct: 356 RISVLKNQNIDVIEERINQLFFANAGIVEK-DATYLSNARHISLIEKAVQSLQ--AVNEG 412

Query: 399 -DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + G+  D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 413 LELGMPVDLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457


>gi|224541282|ref|ZP_03681821.1| hypothetical protein CATMIT_00442 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525786|gb|EEF94891.1| hypothetical protein CATMIT_00442 [Catenibacterium mitsuokai DSM
           15897]
          Length = 445

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 146/455 (32%), Positives = 250/455 (54%), Gaps = 25/455 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGLDG 58
           M    + I A++T  L +AISIIR+SG  C    +  F     K   +  ++ Y + +DG
Sbjct: 1   MTMNDDIICAIATSRLEAAISIIRISGKGCIDFVQSFFTGNLNK---KSQTISYGYIVDG 57

Query: 59  R-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ L+ ++    +FTGE+  E + HGG+ + N +L  L      R+A  GEFS+RA
Sbjct: 58  EEKVDEVLISIYRGQHTFTGEEMVEINCHGGVFITNKVLS-LCLKKGARMAEHGEFSKRA 116

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE+++DLI++  +   +L+++G+ G +++      + L  I + IE ++D
Sbjct: 117 FLNGRIDLSQAEAISDLITANNDQAAKLALKGIQGNITNFIKDLKEDLIKIITQIEVNID 176

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E ED++  +++++L   + L+  +   + + K   +I++G   VI+G  N GKSSL N
Sbjct: 177 YPEYEDIEELTAEKLLPGSVSLRKKMDDILDRSKNMHLIKDGISTVIVGKPNVGKSSLLN 236

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL ++D AIVTDI GTTRDV+   + L   ++ + DTAGIRET+D +E  G+K++   ++
Sbjct: 237 ALLEEDKAIVTDIAGTTRDVVEGSIRLNDIVLNMIDTAGIRETEDKIEHMGVKKSLSLID 296

Query: 298 NADLILLLK------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            ADL+L++       E   K+ +   + ++ I +  KSD       E  H+  S     +
Sbjct: 297 QADLVLVVLDGSRPIEAEDKELLERTEGLNRIVLINKSDKGCVIDTEGIHI--SAKENHI 354

Query: 352 EELINKIK-----SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDII 405
           +ELI  IK     S ++N        + +++R +  L +  + L +A    E     D+I
Sbjct: 355 DELIQHIKDEFDFSAITNS----QAQVLANQRQVQLLEKASQSLNVAIQAMEDGIPTDLI 410

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +L  +  +L +I G    E LLD +F +FCIGK
Sbjct: 411 VTDLYDSWENLKEILGEQAKEDLLDELFKRFCIGK 445


>gi|83815382|ref|YP_444209.1| tRNA modification GTPase TrmE [Salinibacter ruber DSM 13855]
 gi|123529876|sp|Q2S6H2|MNME_SALRD RecName: Full=tRNA modification GTPase mnmE
 gi|83756776|gb|ABC44889.1| tRNA modification GTPase TrmE [Salinibacter ruber DSM 13855]
          Length = 461

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 148/464 (31%), Positives = 248/464 (53%), Gaps = 32/464 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGR 59
           + +TI A++T    +A++++R SGP+  ++ +  C +        S     G+     G 
Sbjct: 3   QSDTIAAIATARGRAALAVVRTSGPAAIEIVDR-CFRGDALTDADSHTAHVGVLTDEAGT 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  VF +P S TGE   E   HGG       L+ L      R+A PGEF+ RAF 
Sbjct: 62  DIDQVVATVFRAPNSATGEHVVEVSCHGGDLAPKMALQSLLDH-GARMAEPGEFTERAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI + +    + S+  + G  S L G   ++L ++ S +E ++DFS
Sbjct: 121 NGKMDLAQAEAVADLIDATSTKAHQASLTHLKGRYSDLLGDLREELLNLCSLVELEIDFS 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDI-SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E DV+ F+ +E L D+L    +I    +     GE +++G ++VI G  NAGKS+L NA
Sbjct: 181 DE-DVE-FADRERLEDLLDETEEILGDLLDTYPTGEKLKDGVQVVIGGRPNAGKSTLLNA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L   D AIV++ PGTTRD +  + ++EG L +  DTAG+R+T D +E EG++R    +E 
Sbjct: 239 LVGHDRAIVSETPGTTRDEIEAEAEIEGVLFRFVDTAGLRDTADEIEAEGVRRATESIEE 298

Query: 299 ADLILLLKEIN---SKKEISFPK-------NIDFIFIGTKSD---------LYSTYTEEY 339
           AD++  L ++      +EI+F +       ++  + IG K+D         L    + + 
Sbjct: 299 ADVLFYLYDLTVGLDSQEIAFLQDLADDGSDVQPVVIGNKADRAPDLPVATLDGLTSLKL 358

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLNEK 398
             L +    + ++ L++ +   ++    +   S +  ++RH  HL   +  ++ A     
Sbjct: 359 SALEAREDADEVQPLLDHLTDTVAEHLSRAEASPVVMNQRHRQHLRDALDAVQQAR-EAL 417

Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D G+  D++  +LR A   LG ITG +  E +LD IFS+FCIGK
Sbjct: 418 DAGVSGDMLTLDLRAALQELGAITGEITNEDVLDQIFSRFCIGK 461


>gi|218295491|ref|ZP_03496304.1| tRNA modification GTPase TrmE [Thermus aquaticus Y51MC23]
 gi|218244123|gb|EED10649.1| tRNA modification GTPase TrmE [Thermus aquaticus Y51MC23]
          Length = 432

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 145/442 (32%), Positives = 236/442 (53%), Gaps = 19/442 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGR 59
           K+ I A++T     AI ++RLSG    ++     + + P   K   R+  G       G 
Sbjct: 4   KDPICAIATPPGKGAIGVVRLSGEGALELAARAFRGRDPRRLKGG-RFTLGEVVDPATGE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ LL+VF +P S+TGED  EF  HG  AV+  ++E L  +   R A  GEF+ RA+ 
Sbjct: 63  VIDQALLLVFRAPHSYTGEDLVEFQTHGSPAVLRRVMEVLVSL-GARPAGRGEFTLRAYL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++  LI +E E+ RR ++  + G LS       +KL  + + I+A LD+ 
Sbjct: 122 NGKLDLAQAEAVLALIEAEGELARRQALRALEGALSRRIAALEEKLLGLLAHIQALLDYP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE  V+   ++ V+ + L    ++   ++Q K   + + G ++ ++G  NAGKSSL NAL
Sbjct: 182 EE-GVEPHRAEGVIREAL---AEVEGLLAQAKASRLAQKGARLALIGAPNAGKSSLLNAL 237

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + A+V+ IPGTTRD L   L+L G  +   DTAG+RET+D +E+ G++R     E A
Sbjct: 238 LGYERALVSPIPGTTRDYLEAPLELFGIPLIAVDTAGVRETEDPLERAGVERALRIAEEA 297

Query: 300 DLILLLKEINSKKEISFPKNID-FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           DLIL + + +  +    P   +  + + TK+DL   + +     +SS TGEG+  L   +
Sbjct: 298 DLILYVADRSVPRPPPPPLPWERVVRVATKADLPKAWEDPAFLSVSSLTGEGMGRLKEAL 357

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           +  L  + +   F + + ++    L    R  E  +L E   GL  + E LR    +L  
Sbjct: 358 REALLGR-EGGEFLL-TERQVEALLRAKERLGEALALPEDLMGL-ALEEALR----ALAA 410

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           +TG    E+++  +F  FC+GK
Sbjct: 411 LTGREVAEEVVARVFQNFCVGK 432


>gi|283768664|ref|ZP_06341576.1| tRNA modification GTPase TrmE [Bulleidia extructa W1219]
 gi|283105056|gb|EFC06428.1| tRNA modification GTPase TrmE [Bulleidia extructa W1219]
          Length = 441

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 141/448 (31%), Positives = 249/448 (55%), Gaps = 15/448 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGR 59
           M+H+  TI A+ST     A+SIIR+SGP  F++ + +C K  +       +R        
Sbjct: 1   MSHD--TIAAISTADAMGAVSIIRISGPDTFEIVKKLCHKDVRNMEGYRMVRSEIYDQQE 58

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D  L+ VF +P S+TGED  E + HGG+ + + IL+ L      RLA  GEF++RAF 
Sbjct: 59  VVDDSLISVFHAPYSYTGEDVVELNCHGGVYLTHKILQ-LVLGLGARLAKRGEFTQRAFL 117

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N K+DL +AE++ DLI +E E+  + ++  + G +  +     ++L  + + IE ++D+ 
Sbjct: 118 NEKMDLSQAEAIQDLIVAEDEINTKAAIHTLKGSILRVLRPLEEELIQMIAHIEVNIDYP 177

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+     ++L      +  +   + + +  ++++ G + VI+G  N GKSSL NAL
Sbjct: 178 EYDDVEMLVESDILPKAKAWRQQLEKLVLESEKAQVVKGGVQTVIVGRPNVGKSSLLNAL 237

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++D AIVTDI GTTRD++  ++ +  + + + DTAGIR+++D +E+ GI+++   +E A
Sbjct: 238 LEEDKAIVTDIAGTTRDIVEGNIRIGSFSLHLIDTAGIRDSNDRIEQMGIEKSKKMIEKA 297

Query: 300 DLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
            LILL+ +      I  ++ +   K+   I I  K DL S Y+      IS+ TG+ +E 
Sbjct: 298 QLILLVMDGSQELTIEDQELLEQTKDKTRIIIYNKKDLGSKYSGVQ---ISASTGQ-IEA 353

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLA 412
           L  K++++   +         ++ R +      +  ++ A  + E    LD++  +L+ +
Sbjct: 354 LKEKLEALFQQEVLAASGDTLANDRQIGLAKAALGAMDQAIASLEAGMELDLVTLDLQES 413

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              L +++G    E LLD IFS+FC+GK
Sbjct: 414 WNCLKEMSGGRSREGLLDEIFSRFCLGK 441


>gi|295133679|ref|YP_003584355.1| tRNA modification GTPase TrmE [Zunongwangia profunda SM-A87]
 gi|294981694|gb|ADF52159.1| tRNA modification GTPase TrmE [Zunongwangia profunda SM-A87]
          Length = 480

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 157/482 (32%), Positives = 251/482 (52%), Gaps = 53/482 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDG-RI 60
           +TI A++T +   AI++IR+SGP    +    F  K KK    + +     G  +DG R 
Sbjct: 5   DTIVALATPSGAGAIAVIRVSGPEAISIVAPLFKAKSKKKLEEQPTHTLHLGNIVDGQRN 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L+ VF +P+S+TGE++ E   HG   +   I++ L +    R A  GEF+ RAF N
Sbjct: 65  LDEVLISVFRAPKSYTGEETIEISCHGSPYIQQEIIQLLVR-SGCRSAEAGEFTLRAFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLISSE     +++M+ M G  S+   +  ++L +  S IE +LDF+E
Sbjct: 124 AKMDLSQAEAVADLISSENAASHQMAMQQMRGGFSNEIQRLREELLNFASLIELELDFAE 183

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV+  +  +  N +  ++  +   I     G +++NG  + I+G  N GKS+L NAL 
Sbjct: 184 E-DVEFANRDQFRNLVARIQKVLKRLIDSFATGNVLKNGIPVAIVGEPNVGKSTLLNALL 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV++I GTTRDV+  +L + G   +  DTAGIRET D+VE  GIK+TF ++  A 
Sbjct: 243 NEERAIVSEIAGTTRDVIEDELAIGGVGFRFIDTAGIRETKDVVESIGIKKTFEKIGQAQ 302

Query: 301 LILLLKEINSKKEISFPK------------------------------NIDFIFIGTKSD 330
           +++ L + +   +I F +                                  + I  K D
Sbjct: 303 VVIYLFDTSRLSKIEFAEGSVAKDQLQGNETSLNMIQVEIEKIKNKYPQKPLVIIANKID 362

Query: 331 LYSTYTEEYD----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                TEE            HL+S+ TG G+EEL  K+ + ++    +   +I ++ RH 
Sbjct: 363 ---QLTEEQVEILTSRIPDLHLLSAKTGLGVEELKEKLLNFVNTGALRNNNTIVTNSRHY 419

Query: 381 YHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
             L + +  +      LN +  G D++A ++R A    G+ITG +  + LL  IF+ FCI
Sbjct: 420 NALLKALEEINKVEDGLNMELSG-DLLAIDIRQALHHFGEITGEITNDDLLGNIFANFCI 478

Query: 439 GK 440
           GK
Sbjct: 479 GK 480


>gi|332886080|gb|EGK06324.1| tRNA modification GTPase TrmE [Dysgonomonas mossii DSM 22836]
          Length = 463

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 167/468 (35%), Positives = 257/468 (54%), Gaps = 38/468 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFGL--DG 58
           E   I A+ST A    I+IIRLSG  C ++ + +    K KK    KA   +F  L  D 
Sbjct: 3   ENNIIAAISTPAGIGGIAIIRLSGNGCIELVDAVFRSFKGKKLADAKAYTVHFGSLIKDN 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            +LD  L+ VF +P SFTGED  E   HG I +   IL+ L       LA PGEF++RAF
Sbjct: 63  VVLDDVLVSVFRNPHSFTGEDIIEISCHGSIYIQQNILQLLIS-KGASLAQPGEFTQRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AES+ADLI+S +    RL+M  M G  S+   +   +L +  S IE +LDF
Sbjct: 122 LNGKMDLSQAESVADLIASSSAATHRLAMNQMRGGFSNKLIELRTELLNFTSLIELELDF 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSS 234
           SEE DV+ F++++ L +     + I SHI +      +G  +++G  + I+G +NAGKS+
Sbjct: 182 SEE-DVE-FANRDHLKE---AAHQIESHIKKLADSFSIGNAVKSGIPVAIIGETNAGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIV+DI GTTRDV+   ++++G   ++ DTAGIR+T D +E  GI+RTF 
Sbjct: 237 LLNLLLHEEKAIVSDIHGTTRDVIEDTINIQGLTFRLIDTAGIRDTHDEIESLGIERTFK 296

Query: 295 EVENADLILLLKE---IN------SKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHLI- 343
           ++E A+++L + +   IN      S+K +    +   + +  K D+ S   + E + L+ 
Sbjct: 297 KIEQANIVLWVADCETINEHIEELSQKILPVVGDRKLVLVFNKVDIISAERKAEKEKLLL 356

Query: 344 -----SSFTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYLEMAS 394
                  F     E+  N+++ +L         S    I ++ RH   L   +  ++  S
Sbjct: 357 DKIPERVFISAKYEQGTNQLEDLLVKTANIPEISEQDIIVTNVRHYEALQNALTAIKRVS 416

Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L  K  G D +++++R     LG+ITG +  +++L  IFSKFCIGK
Sbjct: 417 EGLELKISG-DFLSQDIRECLYYLGEITGQISTDEILGNIFSKFCIGK 463


>gi|163755505|ref|ZP_02162624.1| tRNA modification GTPase [Kordia algicida OT-1]
 gi|161324418|gb|EDP95748.1| tRNA modification GTPase [Kordia algicida OT-1]
          Length = 464

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 155/468 (33%), Positives = 257/468 (54%), Gaps = 41/468 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGRI 60
           +TI A++T +   AIS+IR+SG     +CE  F   + K   ++ S     G    + R 
Sbjct: 5   DTIVALATPSGAGAISVIRVSGKDAITICEPLFKSVRNKNLSKQKSHTIHLGHIVDNDRY 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L+ +F  P S+TGE++ E   HG + +   I++ L +    R AN GEF+ R+F N
Sbjct: 65  LDEVLVSLFKGPNSYTGENTIEISCHGSVYIQQQIIQLLLR-NGCRNANAGEFTLRSFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI+S++E   +L+M+ M G  S+      ++L +  S IE +LDF+E
Sbjct: 124 GKLDLSQAEAVADLIASDSEASHQLAMQQMRGGFSNEIKNLREELLNFASLIELELDFAE 183

Query: 181 EE----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           E+    D   F  K ++  I F+   +   I    +G +I+NG  + I+G  N GKS+L 
Sbjct: 184 EDVEFADRTQF--KTLVKRIQFV---LKRLIDSFAVGNVIKNGIPVAIVGEPNVGKSTLL 238

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  ++ AIV+DI GTTRD +  +L ++G   +  DTAGIRET D+VE  GI++TF ++
Sbjct: 239 NALLNEERAIVSDIAGTTRDTIEDELVIDGISFRFIDTAGIRETKDVVESIGIQKTFEKI 298

Query: 297 ENADLIL-----------------LLKEINSKKEISFPKNIDFIFIGTKSD----LYSTY 335
           E A +++                 +L+EI+ K +  FP+    + +  K D     +   
Sbjct: 299 EQAQVVIYLFDASLLSNDQEKSKVMLQEIH-KLQNKFPQK-PIVIVSNKIDKGDATFIKN 356

Query: 336 TEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
           T E+D+  L+S+    G+++L  K+ S ++    +   +I ++ RH   L + +  ++  
Sbjct: 357 TFEFDNLLLLSAKENIGVDDLKEKLVSFVNTGALRNNETIITNTRHYDALLKALEEIDKV 416

Query: 394 SLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               E    +D++A ++R A    G+ITG +  + LL  IF+ FCIGK
Sbjct: 417 HYGLESGLSVDLMAIDIRQALYHFGEITGEITSDDLLGNIFANFCIGK 464


>gi|329769256|ref|ZP_08260673.1| tRNA modification GTPase TrmE [Gemella sanguinis M325]
 gi|328839250|gb|EGF88833.1| tRNA modification GTPase TrmE [Gemella sanguinis M325]
          Length = 460

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 155/470 (32%), Positives = 250/470 (53%), Gaps = 47/470 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG- 64
           ETI A+ST     AI I+RLSG   F + + I +  K    ++   +     G ++D   
Sbjct: 3   ETICAISTALGEGAIGIVRLSGDEAFSIADKIVRLPKGKTVESLPTHTINY-GNVIDPAT 61

Query: 65  -------LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
                  +L+    P ++T ED  E + HGGI  +  +L  L      R+A PGEF++RA
Sbjct: 62  NEKIEEIMLVKMVGPRTYTTEDVVEINCHGGIITIQKVLA-LCLEHGARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++   M G LS+L  +   ++  I + +E ++D
Sbjct: 121 FLNGRIDLTQAEAVIDFIKSKTDEASQIANNQMQGRLSTLIKRLRAEILDILTVVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +D++  ++K +L     +K  +   +   K G+II+ G    I+G  N GKSSL N
Sbjct: 181 YPEYDDLEIETTKTILEKSTSIKRSLEDLLETSKQGKIIKEGINTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDVL   ++++G  +K+ DTAGIRETDDIVE+ G++R+   +E
Sbjct: 241 NLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDDIVEQIGVQRSKDALE 300

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEE------YDHLI 343
            ADL+L L  +NS +E++          K    I I  K DL +    E      ++H I
Sbjct: 301 KADLVLFL--LNSSEELTEDDKELLKLTKGKTTIVILNKLDLETKIDLEEVEKLAHNHPI 358

Query: 344 ---SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR----YLEMASLN 396
              S  T +G++EL   I+ +         F   +  +   +LS T +       +ASLN
Sbjct: 359 IKTSMTTYKGIDELEKNIRDLF--------FGGAARPKDATYLSNTRQINLIQRALASLN 410

Query: 397 E----KDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E     + GL  D++  +   A   LG++ G    ++L++ +FS+FC+GK
Sbjct: 411 EAIGAAELGLEVDMVLIDYTNAFNLLGEVIGENSGDELINELFSRFCLGK 460


>gi|322516820|ref|ZP_08069722.1| tRNA modification GTPase TrmE [Streptococcus vestibularis ATCC
           49124]
 gi|322124657|gb|EFX96121.1| tRNA modification GTPase TrmE [Streptococcus vestibularis ATCC
           49124]
          Length = 456

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 145/458 (31%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI I+RLSG     +   + K K      AS    +G    +
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDAVAIANKVFKGKN-LETVASHTINYGHIVEN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ ++ V  +P++FT ED  E + HGG+AV N IL+ L +    R+A PGEF++RA
Sbjct: 62  DETIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIR-SGARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G L  L      ++ +  + +E ++D
Sbjct: 121 FLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++  V       +  + + ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 181 YPEYDDVEEVTTALVREKTQDFQALLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDD+VEK G++R+   +E
Sbjct: 241 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALE 300

Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345
            ADL+LL+  +NS + ++          KN + I +  K+DL  +   EE       IS 
Sbjct: 301 EADLVLLV--LNSSEPLTEQDRTLLEISKNSNRIILLNKTDLPQAIQMEELPEDVIPISV 358

Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              E ++++ ++I  +  +     +   +  S+ RH+  +   +  LE  +   E    +
Sbjct: 359 LKNENIDKIEDRINQLFFDNAGLVEKDATYLSNARHISLIESALESLEAVNQGLELGMPV 418

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 DLLQVDITRTWEILGEITGDAAPDELITQLFSQFCLGK 456


>gi|289613219|emb|CBI59813.1| unnamed protein product [Sordaria macrospora]
          Length = 602

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 174/544 (31%), Positives = 252/544 (46%), Gaps = 124/544 (22%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF---------- 54
           +TI+A+S+G           SG +   V   +C  K  P PR A++R             
Sbjct: 74  DTIYALSSG-----------SGRAGIAVYNSLCPTKPVPKPRYAAVRTLTEPTAPGKEVS 122

Query: 55  -GLDGRILDK-GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-----LRL 107
              +  +LD   L++ FP P++ TGED  E HVHGG A V  +L  + K  +     +R 
Sbjct: 123 SAANANVLDTDALVLYFPGPKTVTGEDILELHVHGGSATVKAVLSAIPKSESTSSGTIRY 182

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A  GEF++RAF N +IDL + E+L D +S+ETE QRR ++ G SG L   Y  W ++L  
Sbjct: 183 AEQGEFTKRAFLNNRIDLAQVEALGDTLSAETEQQRRAAIRGTSGVLGKTYESWREQLLL 242

Query: 168 IRSFIEADLDFSEEEDVQNF--SSKEVLNDILFLKNDISSHISQGKLG----EIIRNGYK 221
            R  IEA +DFSE+   Q+F  S  E+L ++  L   I   I   ++G    E++RNG +
Sbjct: 243 ARGEIEALIDFSED---QHFDESPTELLRNVTHLVKGILRSIKLHEMGSQRSELLRNGIR 299

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I +LG  N GKSSL N +  ++ +IV+   GTTRD++   LD+ GYL   +DTAGIR   
Sbjct: 300 IALLGPPNVGKSSLMNLIVGREASIVSSEAGTTRDIVEASLDIRGYLCSFADTAGIRTRS 359

Query: 282 DI-------------VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF------ 322
            +             +E+EGI+R   +  ++D+I++L  +      S+  N D       
Sbjct: 360 SLLPAEQKEEAPIGKIEEEGIRRARQKALDSDVIIVLASVEPHTNNSYRLNYDLSTLHLA 419

Query: 323 -----------------------IFIGTKSDLYSTYTEEYDH-------LISSFTGEGLE 352
                                  +    K+D+ ST   E          LIS  T E  +
Sbjct: 420 SSAPESLLAINKSETVPPDVLAQLIQSFKNDVLSTALPENSPLKIKDPILISCRTAEQQQ 479

Query: 353 EL----------INKIKSILSNKFKKLPFSIPSHKRHLYH--------LSQTVRYLE--M 392
            L          I+ + S LS+ F  L  +IP    HL          L Q    LE  M
Sbjct: 480 SLKDTDDKDPGKIHHLISRLSSSFADL-TAIPQDMEHLLGVTARQNELLGQCRDALEDFM 538

Query: 393 ASLNEKD-----------CGLDII--AENLRLASVSLGKITG---CVDVEQLLDIIFSKF 436
           A  N                 DI+  AE+LR+A+  L  ITG     DVE++L +IF KF
Sbjct: 539 AEANPTTFEGEGMGIGEEVEADIVLAAEHLRVAAGKLAAITGKGEAGDVEEVLGVIFEKF 598

Query: 437 CIGK 440
           C+GK
Sbjct: 599 CVGK 602


>gi|110597255|ref|ZP_01385543.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Chlorobium ferrooxidans DSM 13031]
 gi|110341091|gb|EAT59559.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Chlorobium ferrooxidans DSM 13031]
          Length = 474

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 161/463 (34%), Positives = 246/463 (53%), Gaps = 33/463 (7%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGRILD-KGL 65
           I AV+T     A++I+R+SG   F +   I KKK+ P  R A  + +    G + D +GL
Sbjct: 15  IAAVATPVGVGALAILRISGRGVFGIAGRIFKKKQNPAFRFAEAKGYTAHFGSVHDSEGL 74

Query: 66  L-----IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +     +V  +P SFT ED  EF  HGG  VV  IL+ L      RLA PGEF+RRAF N
Sbjct: 75  IDEVVALVLRAPNSFTMEDMVEFTCHGGPVVVQHILKVLLD-EGCRLAEPGEFTRRAFLN 133

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDLL+AE++ ++I + +E   R ++  M G LS       ++L    + +E +LDFS 
Sbjct: 134 GRIDLLQAEAIGEMIHARSESAFRTAVTQMQGTLSLRLEAMREQLLRSCALLELELDFS- 192

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EEDV+  + +E+   +  L+ ++   +   + G I++ G   VI G  NAGKS+L N L 
Sbjct: 193 EEDVEFQNRRELQQQLGVLQEELRRLVDSYQHGRIMKEGVATVIAGRPNAGKSTLLNTLL 252

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + +IV+ +PGTTRD +         + +++DTAG+RE ++ VE EG+KR++ ++  AD
Sbjct: 253 GLERSIVSHMPGTTRDYIEECFLYNKTMFRLTDTAGLREAEEAVEHEGVKRSYRKIAEAD 312

Query: 301 LILLLKEI---NSKKEI-------SFPKNIDFIFIGTKSDLYSTYTEEYDHL-------- 342
           LI+ + ++   +   E+       S  +N   I    K DL S   E    L        
Sbjct: 313 LIVYILDLTLDDYADEVARILEFKSEYRNARMIVAANKIDLASESPERIQELREATGCDV 372

Query: 343 --ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMAS-LNE 397
             IS+  GEGLE L  ++ S +     KL  +  + +  RH   L      LE A  L  
Sbjct: 373 CGISAAKGEGLETL-KELMSTMVVGLDKLHEASVLVTSLRHYEALRNASDALENARMLIN 431

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   ++IA  LR A   +G+ITG V  E++L++IF +FCIGK
Sbjct: 432 SNSETELIAFELRSALNYVGEITGKVINEEILNMIFDQFCIGK 474


>gi|322437335|ref|YP_004219547.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX9]
 gi|321165062|gb|ADW70767.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX9]
          Length = 456

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 147/454 (32%), Positives = 246/454 (54%), Gaps = 25/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLD-GRILDK 63
           +TI A+ST      I ++RLSG     +   + + K    P +  L      + G +LD+
Sbjct: 9   DTIVAISTPPGRGGIGVVRLSGADARAIALPMLRLKHALEPGRVRLAKIVDPESGEVLDE 68

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++ ++ +P S+T ED  E   H    ++  +L    +    RLA PGEF++RAF +G++
Sbjct: 69  AVVTLYEAPHSYTTEDVVEIACHSSPVLLEAVLRGCVQA-GARLAEPGEFTQRAFLSGRL 127

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ DLI + T  Q R++   + G LS +      +L  + + +EA +DF+E+ D
Sbjct: 128 DLTQAEAVHDLIEATTLHQARIAAAQLGGALSKIVAPIKRRLVELIAGLEAGVDFAED-D 186

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  E+   I  +++ + +  +    G I+R G+ + I+G  NAGKSSLFN L  + 
Sbjct: 187 LDLMTEAEIAARIESVRDPLQALAATYDYGRIVREGFTLAIVGRPNAGKSSLFNRLLVRQ 246

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI----VEKEGIKRTFLEVENA 299
            AIVTD PGTTRD ++  + +EG  V++ DTAG+R   D      E++GI+RT + +  A
Sbjct: 247 RAIVTDQPGTTRDAISERMSIEGIPVELIDTAGLRTAPDGPEGEAERQGIERTNVAMAEA 306

Query: 300 DLIL-------LLKEINSKKEISFPKNIDFIFIGTKSDLYST--YTEEYDHLI--SSFTG 348
           DL+L       L K+I+   EI   +   ++ +  KSDL S     E  +  I  S+ TG
Sbjct: 307 DLVLHVVDGGALTKDID---EIVVAEARPYLRVLNKSDLLSAGVGAEASEGAIRTSALTG 363

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIA 406
           EG+EEL   I   L+        ++ ++ R    + Q V  LE+A++  +D GL  +++ 
Sbjct: 364 EGIEELKRAIVMALTQTATPPESAVLTNVRQHGAIMQAVDALEIAAVAAQD-GLPHELLL 422

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  A  +L ++TG    +++L++IFS FCIGK
Sbjct: 423 LDLYGALDALDRLTGATSADEILNLIFSTFCIGK 456


>gi|323341065|ref|ZP_08081313.1| tRNA modification GTPase TrmE [Lactobacillus ruminis ATCC 25644]
 gi|323091486|gb|EFZ34110.1| tRNA modification GTPase TrmE [Lactobacillus ruminis ATCC 25644]
          Length = 462

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 244/459 (53%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGRI-- 60
           E +TI A+ST     AISI+R+SG     + + +   K     K+ ++ Y   +D +   
Sbjct: 6   EFDTIAAISTPPGEGAISIVRMSGEEAVSIAQKVFSGKDLTQAKSHTINYGHIVDPKTHE 65

Query: 61  -LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ ++ +  +P++FT ED  E + HGGI   N IL+ L  +   RLA PGEF++RAF 
Sbjct: 66  EIDEVMVSLMLAPKTFTREDVVEINCHGGIVATNRILQ-LLLVNGARLAEPGEFTKRAFL 124

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           +G+IDL +AES+ DLI ++T+   ++++  + G LS L       +  + + +E ++D+ 
Sbjct: 125 HGRIDLTQAESVMDLIRAKTDRSMKIALNQLDGNLSHLIDSLRKDILDVLAQVEVNIDYP 184

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  ++K +    + +K  I   +     G+I+R G    ++G  N GKSSL N L
Sbjct: 185 EYDDVEEMTTKLLKEKAIEIKQRIEQLLKTASQGKIMREGLATALVGRPNVGKSSLLNHL 244

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIVTD+ GTTRDV+   +++ G  +K+ DTAGIRETDD VEK G++R+   +E +
Sbjct: 245 LHEDKAIVTDVAGTTRDVIEEYVNVSGVPLKLIDTAGIRETDDKVEKIGVERSKKAIEQS 304

Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
           DL+L               L++  N KK I      D      + +L         +  S
Sbjct: 305 DLVLLVLNAAESLTKEDLELIRLTNDKKRIIILNKTDLEEKLDRKELAKISGNAPVYATS 364

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402
               EG+E L   I  +  N  +    ++  ++ RH+  L +    L+ + L     G+ 
Sbjct: 365 ILKNEGVEALEEAISKLFFNGIENSQSTVMVTNARHIALLEKAQNSLD-SVLEGISSGMP 423

Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D++  ++  A   LG+ITG    ++LLD +FS+FC+GK
Sbjct: 424 VDLVQIDMTEAWNLLGEITGESYEDELLDQLFSQFCLGK 462


>gi|310794446|gb|EFQ29907.1| GTP-binding protein TrmE [Glomerella graminicola M1.001]
          Length = 486

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 160/491 (32%), Positives = 242/491 (49%), Gaps = 95/491 (19%)

Query: 32  QVCEFICKKKK-PFPRKASLRYFF----GLDGRILDKGLLIV-FPSPESFTGEDSAEFHV 85
           QV + +C  K  P PR A++R       G DG ILD   L++ FP   + TGED  E HV
Sbjct: 4   QVYKGLCPNKPLPKPRYAAVRTLVDAQAGDDGPILDSNALVLYFPGSRTVTGEDVLELHV 63

Query: 86  HGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ 142
           HGG A V  +L  + K P+   +R A PGEF++RAF N ++DL + ESL D +S++TE Q
Sbjct: 64  HGGPATVKAVLAAIPKCPSDSLIRYAEPGEFTKRAFLNDRLDLAQVESLGDTLSADTEQQ 123

Query: 143 RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF--SSKEVLNDILFL- 199
           RR ++ G SG L   Y  W ++L   R  IEA +DF+E+   Q+F  S  E++ ++  L 
Sbjct: 124 RRAAVRGSSGVLGRTYESWREQLLLARGEIEALIDFAED---QHFDESPSELMRNVSALV 180

Query: 200 ---KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
              ++ I  H +  +  E++RNG +I +LG  N GKSSL N +  ++ +IV+   GTTRD
Sbjct: 181 ANMRHSIRVHEAASQRSELLRNGIRIALLGPPNVGKSSLMNLIVGREASIVSMEAGTTRD 240

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDD-------------IVEKEGIKRTFLEVENADLIL 303
           ++ + LD+ GYL   +DTAGIR                 IVE+EGI+R   +   +D+I+
Sbjct: 241 IVEVSLDIRGYLCSFADTAGIRTKSSVSLGGDLSEPALGIVEEEGIRRAKQKASESDIII 300

Query: 304 LLKEINSKKEISFPKNID------------FIFIGTKSDLYSTYTEEYDHLISSFTGE-- 349
           +L  +   ++  F  N D             + +  K D     T  +  L+  F GE  
Sbjct: 301 VLAAVEPGRDGGFRINYDAETLRLALEAQSCLVVVNKRDAVDGST--FSDLLGRFRGEVA 358

Query: 350 ----GLEE----------------------LINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
               G+                         I+++   L   F  +  S+P+ ++ L  L
Sbjct: 359 DHAPGMARAEIITISCREAQAKATSQKDPGAIHRLIDQLVESFAGM-TSLPTDQQDL--L 415

Query: 384 SQTVR--------------YLEMASLNEKDCGLDII--AENLRLASVSLGKITGCV---D 424
             T R              ++ +A   E+    DI+  AE+LR A+  L KITG V   D
Sbjct: 416 GVTARQAQLLEQCRGFLGDFMAVAHPEEEGEEPDIVLAAEHLRYAADCLAKITGRVESGD 475

Query: 425 VEQLLDIIFSK 435
           VE++L +IF K
Sbjct: 476 VEEVLGVIFEK 486


>gi|146300457|ref|YP_001195048.1| tRNA modification GTPase TrmE [Flavobacterium johnsoniae UW101]
 gi|205829142|sp|A5FGE0|MNME_FLAJO RecName: Full=tRNA modification GTPase mnmE
 gi|146154875|gb|ABQ05729.1| tRNA modification GTPase TrmE [Flavobacterium johnsoniae UW101]
          Length = 466

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 160/469 (34%), Positives = 260/469 (55%), Gaps = 39/469 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL---DGR 59
           +++I A++T +   AI++IR+SG     +   + K  K K   ++ +     G    +G+
Sbjct: 4   QDSIVALATPSGAGAIAVIRISGAEAVSIGNSVFKSIKNKDLTKQKTHTLHLGHIVDNGK 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+ L+ VF  P S+TGED+ E   HG   +   I++ L +    R+A+ GEF+ RAF 
Sbjct: 64  TLDEVLVSVFKGPNSYTGEDTIEISCHGSTYIQQQIIQLLLR-KGCRMADAGEFTLRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLISS+ E    ++M+ M G  S+   +  ++L +  S IE +LDF+
Sbjct: 123 NGKLDLSQAEAVADLISSDNEASHHIAMQQMRGGFSNEIAKLREELLNFASLIELELDFA 182

Query: 180 EEEDVQNFSSK----EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           EE DV+ F+ +    E+LN I F+   +   I    +G +I+NG  + I+G  N GKS+L
Sbjct: 183 EE-DVE-FADRTQFHELLNRIEFV---LKRLIDSFAVGNVIKNGIPVAIVGEPNVGKSTL 237

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  ++ AIV+DI GTTRD +  +L + G   +  DTAGIRET D+VE  GIK+TF +
Sbjct: 238 LNALLNEERAIVSDIAGTTRDTIEDELVIGGIGFRFIDTAGIRETKDVVESIGIKKTFEK 297

Query: 296 VENADLILLL------KEINSK--KEISFPKN----IDFIFIGTKSDLYS-----TYTEE 338
           ++ A +++ L      K  +S+   EI   KN       + +  K D+ S       T++
Sbjct: 298 IDQAQVVIYLFDGLKFKASSSEFVSEIEQIKNKYPLKPLLIVVNKKDILSEDEVLNITQK 357

Query: 339 YDH------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
            ++      LIS+    G+EEL N++ S ++    +   +I ++ RH   L + +  ++ 
Sbjct: 358 LENLNAKLLLISAKQKIGVEELKNELLSFVNTGALRNNETIVTNTRHYDSLLKALDEIQK 417

Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                E +   D+IA +++ A    G ITG V  ++LL  IF+ FCIGK
Sbjct: 418 VKFGLETNLSSDLIALDIKEALYQFGLITGQVSNDELLGNIFANFCIGK 466


>gi|262118591|pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
           Complex With Gdp And Folinic Acid
 gi|262118593|pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
           Complex With Gcp
 gi|262118594|pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
           Complex With Gcp
 gi|262118595|pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
           Complex With Gcp
          Length = 476

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 156/463 (33%), Positives = 246/463 (53%), Gaps = 34/463 (7%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKK---KKPFPRKASLRYFFG--LDGR-IL 61
           I A++T     A++I+R+SG     + + + +K          A     FG   DG  ++
Sbjct: 18  IAAIATPVGVGALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDGEEMV 77

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ + +VF +P SFT E   EF  HGG  VV  +L  L      RLA PGEF+RRAF NG
Sbjct: 78  DEVIALVFRAPRSFTAEQMVEFTCHGGPVVVGRVLR-LMLDNGCRLAEPGEFTRRAFLNG 136

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDLL+AE++ ++I + TE   R ++  M G+LS   G   ++L    + IE +LDFSEE
Sbjct: 137 RIDLLQAEAIGEMIHARTESAYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEE 196

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            DV+  S  E+   I  L+++++  I   + G I+  G   VI G  NAGKS+L N L  
Sbjct: 197 -DVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLG 255

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIV+ +PGTTRD +      +  + +++DTAG+RE  + +E EGI+R+ +++  ADL
Sbjct: 256 QERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADL 315

Query: 302 ILLLKEINSKK---EISFPKNI-------DFIFIGTKSDLYS------------TYTEEY 339
           IL L ++ +++   E++  + +        F+ +  K D  +            T TE  
Sbjct: 316 ILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTGTEVI 375

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNE 397
              IS+  G+G++ L   +  ++ N  K    S+  +  RH   L      L+ A  L  
Sbjct: 376 G--ISALNGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALELIA 433

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   ++IA  LR A   +G+ITG V  E++L+ IF KFCIGK
Sbjct: 434 HESETELIAFELRAALDYVGQITGKVVNEEVLNTIFDKFCIGK 476


>gi|319901508|ref|YP_004161236.1| tRNA modification GTPase trmE [Bacteroides helcogenes P 36-108]
 gi|319416539|gb|ADV43650.1| tRNA modification GTPase trmE [Bacteroides helcogenes P 36-108]
          Length = 461

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 157/471 (33%), Positives = 248/471 (52%), Gaps = 47/471 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---------CKKKKPFPRKASLRYFFG 55
           ++TI A++TG    AI  IR+SGP    +   I          +K KP+       Y   
Sbjct: 3   QDTICAIATGQ-GGAIGCIRVSGPEAIGITSRIFIPAMAGKRLEKSKPYTLTFGCVYN-- 59

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            D  I+D+ L+ +F +P S+TGE+S E   HG   ++  IL+ L K    R+A PGE+++
Sbjct: 60  -DTEIVDEVLVSLFRAPHSYTGENSTEITCHGSNYILQKILQLLIK-NGCRMAKPGEYTQ 117

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NGK+DL +AE++ADLI+S +    RL+M  M G  S       D+L    S IE +
Sbjct: 118 RAFLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTSLRDQLLRFTSLIELE 177

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAG 231
           LDFS+ E+++ F+ +    ++  L +DI   ISQ      +G  I+NG  + I+G +NAG
Sbjct: 178 LDFSDHEELE-FADRA---ELCRLADDIERVISQLVHSFSVGNAIKNGVPVAIIGETNAG 233

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KS+L N L  ++ AIV+DI GTTRDV+   ++++G   +  DTAGIRET+D +E  GI+R
Sbjct: 234 KSTLLNVLLNEEKAIVSDIHGTTRDVIEDTVNIDGITFRFIDTAGIRETNDTIESLGIER 293

Query: 292 TFLEVENADLILLL-------KEINSKKEISFPK--NIDFIFIGTKSDLY----STYTEE 338
           TF +++ A+++L +        +I    E   P+      I +  K+DL     S  T +
Sbjct: 294 TFQKLDQAEIVLWMIDATDASSQIVQLSEQILPRCEGKQLILVLNKADLVQDTSSIATTD 353

Query: 339 YDHLISS-FTGEGLEELINKIKSILSNKFKKLPFS-----IPSHKRH---LYHLSQTVRY 389
           +   + S F        I++++ IL      LP       I ++ RH   L H  + ++ 
Sbjct: 354 FPKNVKSIFISAKRRTNIDELQQILIAA-ANLPTVTQNDIIVTNIRHYEALTHALEAIQR 412

Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++    N  +   D +++++R     L  I G V  + +L  IF  FCIGK
Sbjct: 413 VQQGLAN--NLSGDFVSQDIRECIFHLSDIAGEVTNDMVLQNIFQHFCIGK 461


>gi|21674894|ref|NP_662959.1| tRNA modification GTPase TrmE [Chlorobium tepidum TLS]
 gi|25453304|sp|Q8KAS1|MNME_CHLTE RecName: Full=tRNA modification GTPase mnmE
 gi|21648119|gb|AAM73301.1| thiophene and furan oxidation protein ThdF [Chlorobium tepidum TLS]
          Length = 473

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 156/463 (33%), Positives = 246/463 (53%), Gaps = 34/463 (7%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKK---KKPFPRKASLRYFFG--LDGR-IL 61
           I A++T     A++I+R+SG     + + + +K          A     FG   DG  ++
Sbjct: 15  IAAIATPVGVGALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDGEEMV 74

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ + +VF +P SFT E   EF  HGG  VV  +L  L      RLA PGEF+RRAF NG
Sbjct: 75  DEVIALVFRAPRSFTAEQMVEFTCHGGPVVVGRVLR-LMLDNGCRLAEPGEFTRRAFLNG 133

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDLL+AE++ ++I + TE   R ++  M G+LS   G   ++L    + IE +LDFSEE
Sbjct: 134 RIDLLQAEAIGEMIHARTESAYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEE 193

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            DV+  S  E+   I  L+++++  I   + G I+  G   VI G  NAGKS+L N L  
Sbjct: 194 -DVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLG 252

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIV+ +PGTTRD +      +  + +++DTAG+RE  + +E EGI+R+ +++  ADL
Sbjct: 253 QERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADL 312

Query: 302 ILLLKEINSKK---EISFPKNI-------DFIFIGTKSDLYS------------TYTEEY 339
           IL L ++ +++   E++  + +        F+ +  K D  +            T TE  
Sbjct: 313 ILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTGTEVI 372

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNE 397
              IS+  G+G++ L   +  ++ N  K    S+  +  RH   L      L+ A  L  
Sbjct: 373 G--ISALNGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALELIA 430

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   ++IA  LR A   +G+ITG V  E++L+ IF KFCIGK
Sbjct: 431 HESETELIAFELRAALDYVGQITGKVVNEEVLNTIFDKFCIGK 473


>gi|291561652|emb|CBL40451.1| tRNA modification GTPase trmE [butyrate-producing bacterium SS3/4]
          Length = 471

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 158/459 (34%), Positives = 248/459 (54%), Gaps = 29/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKASLRYFFGLDG-RI 60
           +TI A++T    S I I+R+SG +  +V E I     KKK       ++ Y +  DG   
Sbjct: 18  DTIAAIATAMGNSGIGIVRISGENAVEVAEKIFREPGKKKLSEAESHTIHYGYVYDGDET 77

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL++   P S+T ED+ E   HGG+ V   ILE + K    RLA PGEF++RAF N
Sbjct: 78  VDEVLLMLMRGPRSYTAEDTVEIDCHGGMLVTRRILETVLK-AGARLAEPGEFTKRAFLN 136

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I+++ E   + S+  + G +S    +  D++ +  +FIE+ LD  E
Sbjct: 137 GRIDLSQAEAVIDVINAKNEYALQSSVSQLRGSVSKEIHEIRDQIIYEIAFIESALDDPE 196

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              +  +  K +L  +L +K  +   I     G ++  G K VILG  NAGKSSL N L 
Sbjct: 197 HISMDGYGEK-LLKVVLSVKKKLEKLIRSSSNGRVVSEGVKTVILGKPNAGKSSLMNVLV 255

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTD+ GTTRD+L   + L+G  + + DTAGIR+T+D+VEK G+ R   E + AD
Sbjct: 256 GEDRAIVTDVAGTTRDILEEHIYLQGISLNVVDTAGIRDTEDVVEKIGVSRAMEEAKKAD 315

Query: 301 LILLL----KEI--NSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHL-------ISSF 346
           LI+ +    +E+  N  + + F K    + +  KSDL    + +E +         IS+ 
Sbjct: 316 LIIYVVDGSRELDENDYQIMDFIKERKSVVLLNKSDLEPVVSADEVEKRSGHKVIGISAK 375

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402
              G++ L  +IKS+      ++ F+   + ++ RH+  L      + M   N  + G+ 
Sbjct: 376 EETGIDLLEEEIKSLFYE--GEIDFNDQVMITNVRHVKALKDAFESMSMVE-NSIENGMP 432

Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  + +L  A   LG I G    + L++ IFSKFC+GK
Sbjct: 433 EDFYSIDLMDAYEKLGLIVGESVEDDLVNEIFSKFCMGK 471


>gi|330837282|ref|YP_004411923.1| tRNA modification GTPase mnmE [Spirochaeta coccoides DSM 17374]
 gi|329749185|gb|AEC02541.1| tRNA modification GTPase mnmE [Spirochaeta coccoides DSM 17374]
          Length = 487

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 152/453 (33%), Positives = 244/453 (53%), Gaps = 31/453 (6%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR--------YFFGLD-- 57
           IFA++T    SA++++R SGP   +      K    F R  +LR        + F +D  
Sbjct: 46  IFALATPWGESALAVVRTSGPRAVE------KSCLMFSRPGALRAVGTAGLVHGFLMDRL 99

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G  +D+ +  V+     +TGE++ EF  HG +  +  IL  L      R A+PGEF+ R
Sbjct: 100 TGEKVDEVMASVYREGHGYTGEEAVEFSCHGSLDGIKRILR-LCADTGFRPASPGEFTFR 158

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF +G++DL +AE++ +L+S+ +   R ++++ + G L S   Q+  ++  I S IE  L
Sbjct: 159 AFIHGRMDLTKAEAVQELVSARSSRARVMALDRLGGALFSRIEQFKQQVLTILSGIEVQL 218

Query: 177 DFSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           D++E+E      F   E +     L+N  +S       G++  +G ++V+ G +NAGKSS
Sbjct: 219 DYAEDEIGGDTGFPVGESIATATALENLAASW----HAGQLYGSGARVVLAGATNAGKSS 274

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           LFN L K + AIV+DI GTTRD L ++ +++G  V++ DTAG+RE+ D +E EG++RT  
Sbjct: 275 LFNLLLKDERAIVSDIHGTTRDYLEVEAEIDGIPVRLYDTAGLRESADTIEGEGMRRTMH 334

Query: 295 EVENADLILLLK----EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
            +E AD+I+L+K    E  S++E     +   I +  KSDL S   E     IS   GEG
Sbjct: 335 LMEQADIIVLVKDGSVEKQSQEEYIHEDDNRLIVVHNKSDLRSKPLELSGLWISVKKGEG 394

Query: 351 LEELINKIKSILSNKFKK---LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           +  L+  I   L ++  +       I S+++     +        A+++     LDI+A 
Sbjct: 395 ISALVEAIALRLRSRVPENGDEALVIESNRQRDGLYAAAQALRRAAAMDASGVPLDIVAA 454

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L  A  SLG++TG V  E +L+ IFS FC+GK
Sbjct: 455 ELHAALRSLGELTGEVTSEDVLERIFSGFCVGK 487


>gi|319760161|ref|YP_004124099.1| tRNA modification GTPase [Candidatus Blochmannia vafer str. BVAF]
 gi|318038875|gb|ADV33425.1| tRNA modification GTPase [Candidatus Blochmannia vafer str. BVAF]
          Length = 474

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 155/438 (35%), Positives = 227/438 (51%), Gaps = 41/438 (9%)

Query: 41  KKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA 100
           K P PR A    F    G  ++K + + FP P SFTGE+  E H HGG  ++N +L  + 
Sbjct: 40  KVPKPRTAEYLPFRDKQGSTIEKVITLFFPKPHSFTGENILEIHGHGGYIILNILLSRIL 99

Query: 101 KMPN-LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYG 159
           ++ + +RLANPGEF+ RAF N KIDL++AES+AD+I + +    + +   + G  S+   
Sbjct: 100 EISSKIRLANPGEFTERAFLNNKIDLIQAESIADIIDATSYQAAKAAYNSLQGFFSNQIH 159

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
             +DK+ + R  +E+ +DFS++ D+   S  ++   +  +  +          G ++R+G
Sbjct: 160 NILDKIIYCRMHVESTIDFSDQ-DIDTISYNKIKKILKNIITETDKIYKSAYSGSLLRDG 218

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI+I G  NAGKSSLFNAL   D AI++ IPGTTRD L   + L G    I+DTAG++E
Sbjct: 219 IKIIIAGKPNAGKSSLFNALINLDRAIISSIPGTTRDTLYETIQLNGITFHITDTAGLQE 278

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINS-------------KKEISFPKNIDFIFI 325
            + + +E  GIKR   E++ AD IL + + +S             K   +  K      I
Sbjct: 279 HSTNEIELIGIKRAKNELKLADHILWVVDSSSCSNKYDDMLLPLQKTLPNINKKTTITII 338

Query: 326 GTKSDLYSTYTEEYDHLISSFTGEGLEELINK----IKSILSNKFKK------LPFSIP- 374
             KSDL  +  +   ++I+ +T   L  L+N     +K  L N  K       LP SI  
Sbjct: 339 RNKSDL--SLEKNGIYIINGYTCITLSALLNSGIDLLKKYLYNNTKHKIQHYTLPHSIEE 396

Query: 375 ------SHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII----AENLRLASVSLGKITGC 422
                 + +RHL  +    +YL  A   LN   CG+ II    AE+LR A   L KI G 
Sbjct: 397 NQNNFIARQRHLNIIKNAYQYLLSAQKQLNHYYCGVTIINDRFAEDLRYAHDELNKIFGK 456

Query: 423 VDVEQLLDIIFSKFCIGK 440
              + LL  IFS FCIGK
Sbjct: 457 STPDNLLKKIFSSFCIGK 474


>gi|325970663|ref|YP_004246854.1| tRNA modification GTPase mnmE [Spirochaeta sp. Buddy]
 gi|324025901|gb|ADY12660.1| tRNA modification GTPase mnmE [Spirochaeta sp. Buddy]
          Length = 442

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 146/445 (32%), Positives = 247/445 (55%), Gaps = 20/445 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61
           + I+A++T    SA++++R+SG  C  +      + K     A+     G     +G  +
Sbjct: 8   DIIYALATAWAQSALAVVRVSGQGCRNLLSTRFSRPKALIEAANATLVHGYLRDGNGSAI 67

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ +  V+     +T E+S EF  HG +AV+  IL  L     +R A  GEF+ RAF +G
Sbjct: 68  DEVVAAVYTDGHGYTKEESVEFSCHGSLAVIKEILA-LFNHLGMRSAEGGEFTFRAFLHG 126

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++ +L+SS++++ R L++  + G L        ++L  I + +E  LD++E+
Sbjct: 127 RLDLTQAEAVGELVSSQSQISRSLALGRLEGSLRGRIAAMKEQLLGIVAAVEVQLDYAED 186

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E  +    +  L D++    D+S+     ++G + R G +IV+ G +NAGKSSLFN L K
Sbjct: 187 ELDEFVFPRSGLVDLIKQVKDLSATY---QIGRLYRMGARIVLAGSTNAGKSSLFNLLLK 243

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ +IV+ + GTTRD +  DLD++G  +++ DTAG+RE+DD +E EGI+RT   +  ADL
Sbjct: 244 QERSIVSPVRGTTRDYIEADLDVQGIPIRLYDTAGLRESDDAIESEGIRRTERLIGQADL 303

Query: 302 ILLLKEINSKKEISFPKNID-FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           ++ L  ++S +    PK  +  + +  KSDL      +    IS+ TGEG+  L+ +I  
Sbjct: 304 VVYL--VDSTELGHVPKEDERTLVVYNKSDLVK--PPKGRMAISAQTGEGVPNLLAEIAK 359

Query: 361 ILSN---KFKKLPFSIPSHKRH--LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
            L+            I S ++H  L + +Q ++   +  L ++D  LDI A  L  A  +
Sbjct: 360 RLAKGSVSSGDEQVVIESERQHTLLENAAQALQRCLV--LVDQDIPLDITAVELGEALQN 417

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG++TG V    +L  IFS FC+GK
Sbjct: 418 LGELTGEVTPADILQKIFSGFCVGK 442


>gi|322389428|ref|ZP_08062982.1| thiophene and furan oxidation protein ThdF [Streptococcus
           parasanguinis ATCC 903]
 gi|321143916|gb|EFX39340.1| thiophene and furan oxidation protein ThdF [Streptococcus
           parasanguinis ATCC 903]
          Length = 466

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 148/462 (32%), Positives = 258/462 (55%), Gaps = 28/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS  L Y   +D 
Sbjct: 11  ITKEFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 69

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ILD+ ++    SP++FT ED  E + HGGIAV N IL+ L      RLA PGEF++
Sbjct: 70  DKDEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LVIREGARLAEPGEFTK 128

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 129 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 188

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  +++ +       +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 189 IDYPEYDDVEEATTEIIREKTSEFEALLTNLLKTARRGKILREGISTAIIGRPNVGKSSL 248

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   
Sbjct: 249 LNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVEQIGVERSKKA 308

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   +       ++ +   ++ + I +  K DL      E D L      I
Sbjct: 309 LKEADLVLLVLNASEPLTDQDRQLLEISQDSNRIILLNKVDLPEKI--EIDQLPEDHIKI 366

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK--- 398
           S    + ++++ ++I ++   +    +   +  S+ RH+  + + V  L+  ++NE    
Sbjct: 367 SVLKNQNIDQIEDRINALFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLAL 424

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 425 GMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 466


>gi|15618747|ref|NP_225033.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae CWL029]
 gi|15836371|ref|NP_300895.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae J138]
 gi|16752200|ref|NP_445568.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae AR39]
 gi|33242198|ref|NP_877139.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae TW-183]
 gi|14195307|sp|Q9Z768|MNME_CHLPN RecName: Full=tRNA modification GTPase mnmE
 gi|4377152|gb|AAD18976.1| Thiophene/Furan Oxidation Protein [Chlamydophila pneumoniae CWL029]
 gi|8163542|gb|AAF73725.1| thiophene and furan oxidation protein ThdF [Chlamydophila
           pneumoniae AR39]
 gi|8979212|dbj|BAA99046.1| thiophene/furan oxidation protein [Chlamydophila pneumoniae J138]
 gi|33236709|gb|AAP98796.1| thiophene/furan oxidation protein [Chlamydophila pneumoniae TW-183]
          Length = 442

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 160/448 (35%), Positives = 231/448 (51%), Gaps = 23/448 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LDGRILD 62
           +TI A++T     +I+++RLSGP    + + I          AS     G    +  ++D
Sbjct: 5   DTIAAIATPPGEGSIAVVRLSGPQAIVIADRIFSGS--VASFASHTIHLGQVIFEETLID 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LL++  SP SFTGED  EF  HGG    + IL+ L  +   R A PGEFS+RAF NGK
Sbjct: 63  QALLLLMRSPRSFTGEDVVEFQCHGGFFACSQILDALIAL-GARPALPGEFSQRAFLNGK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AE++ +LI +E     R++     G  S    +    +    +F+E   DF EEE
Sbjct: 122 IDLVQAEAIQNLIVAENIDAFRIAQTHFQGNFSKKIQEIHTLIIEALAFLEVLADFPEEE 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                  +E + + L +  D  S   +G+    +  G  +++ G  N GKSSL NAL +K
Sbjct: 182 QPDLLVPQEKIQNALHIVEDFISSFDEGQR---LAQGTSLILAGKPNVGKSSLLNALLQK 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT IPGTTRD+L     L+G  +++ DTAG R TD+ +EKEGI+R    +E AD I
Sbjct: 239 NRAIVTHIPGTTRDILEEQWLLQGKRIRLLDTAGQRTTDNDIEKEGIERALSAMEEADGI 298

Query: 303 LLLKEINSKKEISFPKNI---DFIFIGTKSDLYSTY---TEEYDHLISSFTGEGL----E 352
           L + +     E   PK +       +  K+DL       T      IS+ TGEGL    +
Sbjct: 299 LWVIDATQPLE-DLPKILFTKPSFLLWNKADLTPPPFLDTSLPQFAISAKTGEGLTQVKQ 357

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            LI  ++   + K  K+ F + S  RH   L +  R L+ A  N      +IIA  LR A
Sbjct: 358 ALIQWMQKQEAGKTSKV-FLVSS--RHHMILQEVARCLKEAQQNLYLQPPEIIALELREA 414

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             S+G ++G    E +L  IFSKFCIGK
Sbjct: 415 LHSIGMLSGKEVTESILGEIFSKFCIGK 442


>gi|315640365|ref|ZP_07895480.1| tRNA modification GTPase TrmE [Enterococcus italicus DSM 15952]
 gi|315483870|gb|EFU74351.1| tRNA modification GTPase TrmE [Enterococcus italicus DSM 15952]
          Length = 465

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 149/466 (31%), Positives = 248/466 (53%), Gaps = 30/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKASLRYFFGL 56
           +  E +TI A+ST     AISI+RLSG     +   +     K+    P   ++ Y   +
Sbjct: 4   ITKEFDTIAAISTPPGEGAISIVRLSGDQAIAIAANVFQAGTKQLAAVPSH-TIHYGHII 62

Query: 57  DGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           D +   ++D+ ++ V  +P++FT ED  E + HGGI VVN +L+ L +    RLA PGEF
Sbjct: 63  DPKTEQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLRQ-GARLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E
Sbjct: 122 TKRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLALNQLDGRLSNLIRALRQEILETLAQVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
            ++D+ E +DV+  +S+ ++     ++  I + +   K G+I+R G    I+G  N GKS
Sbjct: 182 VNIDYPEYDDVEALTSQLLVEKAHHVQAQIQALLQTAKQGKILREGLNTTIIGRPNVGKS 241

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N L +++ AIVTD+ GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+ 
Sbjct: 242 SLLNHLLREEKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRETEDIVERIGVQRSR 301

Query: 294 LEVENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338
             +  ADLIL               LL+  ++ K I      D      +S L S   + 
Sbjct: 302 QALAKADLILLVLNQSEPLSEEDRQLLQATDATKRIVLLNKTDLPSQLDRSALASLVGDA 361

Query: 339 YDHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRH---LYHLSQTVRYLEMAS 394
               +S     GL++L   I  +    +      S  S+ RH   L H SQ +   ++ S
Sbjct: 362 PVFEVSVLENAGLDKLEQAIADLFFGGQTTDKDASYVSNTRHIALLEHASQALS--DVIS 419

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E    +D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 420 GIEAGMPVDLVQIDMTRCWDDLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|91228358|ref|ZP_01262286.1| tRNA modification GTPase [Vibrio alginolyticus 12G01]
 gi|91188118|gb|EAS74422.1| tRNA modification GTPase [Vibrio alginolyticus 12G01]
          Length = 288

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 118/288 (40%), Positives = 173/288 (60%), Gaps = 4/288 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A +T      + IIR+SGP   QV  E   K  KP  R A    F   DG +LD+G
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKTLKP--RYAEYLPFKSEDGTVLDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+D
Sbjct: 62  IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGIRAARPGEFSERAFLNDKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + G  S      ++ L H+R ++EA +DF EEE +
Sbjct: 122 LAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEE-I 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+ 
Sbjct: 181 DFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           AIVTDI GTTRDVL   + ++G  + I DTA +R+  D VEK GI+R 
Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTARLRDASDEVEKIGIERA 288


>gi|296810456|ref|XP_002845566.1| tRNA modification GTPase GTPBP3 [Arthroderma otae CBS 113480]
 gi|238842954|gb|EEQ32616.1| tRNA modification GTPase GTPBP3 [Arthroderma otae CBS 113480]
          Length = 622

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 126/324 (38%), Positives = 185/324 (57%), Gaps = 43/324 (13%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-----GLDGRI 60
           TI+A+ST    +AI+IIR+SG  C  + + +C  +K P PR A+LR  +          I
Sbjct: 62  TIYALSTAPGRAAIAIIRISGSDCIPIYKALCPGRKLPKPRFAALRTIYEPGKPTSGDNI 121

Query: 61  LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP--------NLRLANPG 111
           LD G L+  FP P + TGED  E HVHG  AV+  IL  + K          ++R A PG
Sbjct: 122 LDSGALVFHFPGPNTVTGEDVLELHVHGSPAVIRSILNAIPKCAGTDGAPSSSIRYAEPG 181

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+RRAF N ++DL + E+L + ++++TE QRRL++ G +  LS+ Y QW  +L + R  
Sbjct: 182 EFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQWRQQLLYARGE 241

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILF--------LKNDISSHISQGKLGEIIRNGYKIV 223
           +EA +DFSE+   Q+F   E ++D +F        L + I+ HI     GE++R+G K+ 
Sbjct: 242 LEALIDFSED---QHFD--ESVDDFIFSVTKQVHNLLHQINLHIQNAAKGELLRSGIKVA 296

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR----- 278
           +LG  NAGKSSL N +  ++ AIV+   GTTRD++ + +DL G+L K  D AG+R     
Sbjct: 297 LLGAPNAGKSSLLNQVVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSELSK 356

Query: 279 ----------ETDDIVEKEGIKRT 292
                      T   VE+EGI+R 
Sbjct: 357 SHIVAQGQTVSTIGKVEEEGIRRA 380


>gi|156082555|ref|XP_001608762.1| tRNA modification GTPase TrmE  [Babesia bovis T2Bo]
 gi|154796011|gb|EDO05194.1| tRNA modification GTPase TrmE , putative [Babesia bovis]
          Length = 529

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 154/492 (31%), Positives = 250/492 (50%), Gaps = 64/492 (13%)

Query: 6   ETIFAVSTGALPSA--ISIIRLSGPSCFQVCEFICKK------KKPF---PRKASLRYFF 54
           +T++ +S+        I++ R++G    ++ + + K          F   PR A+LR  +
Sbjct: 45  QTVYGLSSAVHEGGCGIAVTRITGKQSLELLQLLTKSTGTNASNNTFECEPRVATLRVLY 104

Query: 55  G-LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVN---GILEELAKMPNL--RLA 108
                  +D+ + I FP+P SFTGED  E H HG  AV++     + EL+K   L  R A
Sbjct: 105 DKTHSAPIDRVITIYFPAPNSFTGEDVVEIHTHGSRAVISQLFATIRELSKEYGLKVRQA 164

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
             GEF+RRAF NGK+DL++AE++ D+I +ET+++   +   + G LS +Y  W D+L  I
Sbjct: 165 ERGEFTRRAFYNGKLDLIQAEAIRDVIRAETQIEVENAALKIYGRLSKIYHTWTDRLNQI 224

Query: 169 RSFIEADLDFSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
              +EA ++F+E+   D+QN +    LNDI      + +HI+  +  E++  G  + I+G
Sbjct: 225 LGIVEAKIEFNEQASTDLQNTALARELNDI---ATQVRNHINDNR-AELVSMGATVAIVG 280

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-------- 278
             NAGKSSL N +  ++VAIV D+PGTTRD +    DL G  + + DTAGIR        
Sbjct: 281 PPNAGKSSLINTICDRNVAIVADLPGTTRDPVHAKYDLNGIKITLVDTAGIRIVESETTE 340

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN----SKKEISFPKN-----IDFIFIGTKS 329
            +   VE +GI+     +++A ++L L + +    SK  ++   N        I   +K+
Sbjct: 341 NSHQKVEMQGIEMALEYIKDAKVVLFLYDHDNDDMSKYALTMTMNKMSTHSKLIVCISKT 400

Query: 330 DL----------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF---KKLP 370
           DL                Y     E   L +      +++L++ ++     ++   +K P
Sbjct: 401 DLLENKKTQAIIRKLKKNYPLSNAEVIPLSTKIVN-TVDDLLDHVQQTFEKEYQEARKQP 459

Query: 371 F-SIPSHKRHLYH-LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428
           F +    K HL + L +  R LE+  +   +  L+IIAEN+R A   +  I G    E+L
Sbjct: 460 FITDARQKNHLINVLKEIERTLEV--IQSGNHELEIIAENIRAAISQIAYIVGEQTNEEL 517

Query: 429 LDIIFSKFCIGK 440
           LD IF  FC+GK
Sbjct: 518 LDTIFRTFCVGK 529


>gi|269302625|gb|ACZ32725.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae LPCoLN]
          Length = 442

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 160/448 (35%), Positives = 231/448 (51%), Gaps = 23/448 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LDGRILD 62
           +TI A++T     +I+++RLSGP    + + I          AS     G    +  ++D
Sbjct: 5   DTIAAIATPPGEGSIAVVRLSGPQAIVIADRIFSGS--VASFASHTIHLGQVIFEETLID 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LL++  SP SFTGED  EF  HGG    + IL+ L  +   R A PGEFS+RAF NGK
Sbjct: 63  QALLLLMRSPRSFTGEDVVEFQCHGGFFACSQILDALIAL-GARPALPGEFSQRAFLNGK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AE++ +LI +E     R++     G  S    +    +    +F+E   DF EEE
Sbjct: 122 IDLVQAEAIQNLIVAENIDAFRIAQTHFQGNFSKKIQEIHTLIIEALAFLEVLADFPEEE 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                  +E + + L +  D  S   +G+    +  G  +++ G  N GKSSL NAL +K
Sbjct: 182 QPDLLVPQEKIQNALHIVEDFISSFDEGQR---LAQGTSLILAGKPNVGKSSLLNALLQK 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT IPGTTRD+L     L+G  +++ DTAG R TD+ +EKEGI+R    +E AD I
Sbjct: 239 NRAIVTHIPGTTRDILEEQWLLQGKRIRLLDTAGQRTTDNDIEKEGIERALSAMEEADGI 298

Query: 303 LLLKEINSKKEISFPKNI---DFIFIGTKSDLYSTY---TEEYDHLISSFTGEGL----E 352
           L + +     E   PK +       +  K+DL       T      IS+ TGEGL    +
Sbjct: 299 LWVIDATQPLE-DLPKILFTKPSFLLWNKADLAPPPFLDTSLPQFAISAKTGEGLTQVKQ 357

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            LI  ++   + K  K+ F + S  RH   L +  R L+ A  N      +IIA  LR A
Sbjct: 358 ALIQWMQKQEAGKTSKV-FLVSS--RHHMILQEVARCLKEAQQNLYLQPPEIIALELREA 414

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             S+G ++G    E +L  IFSKFCIGK
Sbjct: 415 LHSIGMLSGKEVTESILGEIFSKFCIGK 442


>gi|23100946|ref|NP_694413.1| tRNA modification GTPase TrmE [Oceanobacillus iheyensis HTE831]
 gi|32171820|sp|Q8CX54|MNME_OCEIH RecName: Full=tRNA modification GTPase mnmE
 gi|22779181|dbj|BAC15447.1| tRNA modification GTPase [Oceanobacillus iheyensis HTE831]
          Length = 459

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 147/465 (31%), Positives = 253/465 (54%), Gaps = 36/465 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGRIL 61
           + +TI A+ST     AI+I+RLSG     +   I + K  +  P   +++Y     G+I+
Sbjct: 3   DTDTITAISTPVGEGAIAIVRLSGSEAITITSQIFEGKNLQEVPSH-TIQY-----GKII 56

Query: 62  DKG--------LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE-ELAKMPNLRLANPGE 112
           D G        ++ +   P++FT ED  E + HGG+  VN +LE  LAK   +RLA PGE
Sbjct: 57  DPGTNEVAEEVMVSIMRGPKTFTREDVVEINCHGGMVAVNRVLEIVLAK--GVRLAEPGE 114

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF +G+IDL +AE++ DLI ++T+    ++++ M G LS L  +   +L    + +
Sbjct: 115 FTKRAFLHGRIDLSQAEAVMDLIRAKTDKAMSVALKQMDGRLSKLIQKLRQELLETVAHV 174

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E ++D+ E +DV+  S   +      +++++   +   + G+I+R G    I+G  N GK
Sbjct: 175 EVNIDYPEYDDVEEMSHAMMKEKSKEVRDELDKLLQIAQQGKILREGLSTAIIGRPNVGK 234

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N L +++ AIVT+IPGTTRD++   +++ G  +++ DTAGIRET+DIVE+ G+ R+
Sbjct: 235 SSLMNTLVQENKAIVTEIPGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVDRS 294

Query: 293 FLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST--------YTEE 338
              ++ +DLIL +   N       KK       +++I I  K+DL           + ++
Sbjct: 295 RQVLKESDLILFVLNYNEPLSEDDKKLFEAVDGLEYIVIINKTDLEQQLDLDEVREFAKD 354

Query: 339 YDHLISSFTGE-GLEELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
              + ++   E G++EL   I  +  +        +  S+ RH+  L Q  + LE A   
Sbjct: 355 RPVVTTALLEEQGVDELEKAIADTFFTGDIDTGDMTYVSNVRHIQLLKQAKQALEDAMEG 414

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            E    +DI+  ++  +   +G+I G    + L+D +FS+FC+GK
Sbjct: 415 IELGMPMDIVQIDVTRSWEFMGEIIGDTASDSLIDQLFSQFCLGK 459


>gi|189485762|ref|YP_001956703.1| tRNA modification GTPase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287721|dbj|BAG14242.1| tRNA modification GTPase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 471

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 171/464 (36%), Positives = 257/464 (55%), Gaps = 32/464 (6%)

Query: 1   MNHEKE-TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGLDG 58
           MN+ KE TI A+ST A  SAI++IRLSG + FQ+   I K   KP   +  +++ +  DG
Sbjct: 16  MNYLKEDTIAALSTAAGKSAIAVIRLSGENSFQIIGKIFKTHSKP---EQQVKHGYITDG 72

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
               D+ L   F +P ++TGE+  E   HG   ++N IL  L K    R A PGEF+ RA
Sbjct: 73  IEKKDEVLCTFFKAPHTYTGENLVEIAAHGNPVIINEILNLLYK-NGARPAGPGEFTYRA 131

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K++L EAE++  LI+S+TEM  + ++  +SGE SS      D +T++ + +EA+LD
Sbjct: 132 FLNDKMNLAEAEAVCALITSKTEMSAKAALNSLSGEFSSKIKNIRDAVTNLIASMEANLD 191

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             +E+++   S  E L+       D+ + ++  K G+I++ G K+VI+G  NAGKSSL N
Sbjct: 192 HPDEDNMF-LSRSEKLSRFDSCIKDVQNLLNSYKTGKILQYGIKVVIIGKPNAGKSSLLN 250

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEV 296
           A+  K+ AIVTDI GTT D +   +D  G  + I+DTAGIRE +++++E  G  +T   V
Sbjct: 251 AILGKNRAIVTDIAGTTTDTVEETIDCCGIPLIITDTAGIREHSENLIEILGQAKTREAV 310

Query: 297 ENADLILLL------KEINSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL---- 342
             AD+++ L       + N  K   F K    NI  I +  KSDL   ++    +     
Sbjct: 311 CKADILIWLFDSSSEPDCNDAKIADFLKKSDLNIPIICVLNKSDLPPLFSSSLLNRENKV 370

Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNE 397
              IS+ TG G+ +L+++I  I      K  + +  + RH   L  T+  L     SL+ 
Sbjct: 371 KVKISAKTGVGIADLLDEIVKIAGVSESKNDY-LMINTRHFILLQNTLESLIRTKQSLSA 429

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQ-LLDIIFSKFCIGK 440
           KD       E L  A +SL +I G ++V+Q +LD IFS FCIGK
Sbjct: 430 KDADEIACFEALS-AQISLNEILG-INVKQDILDTIFSTFCIGK 471


>gi|205829219|sp|B1GYZ9|MNME_UNCTG RecName: Full=tRNA modification GTPase mnmE
          Length = 456

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 171/464 (36%), Positives = 257/464 (55%), Gaps = 32/464 (6%)

Query: 1   MNHEKE-TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGLDG 58
           MN+ KE TI A+ST A  SAI++IRLSG + FQ+   I K   KP   +  +++ +  DG
Sbjct: 1   MNYLKEDTIAALSTAAGKSAIAVIRLSGENSFQIIGKIFKTHSKP---EQQVKHGYITDG 57

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
               D+ L   F +P ++TGE+  E   HG   ++N IL  L K    R A PGEF+ RA
Sbjct: 58  IEKKDEVLCTFFKAPHTYTGENLVEIAAHGNPVIINEILNLLYK-NGARPAGPGEFTYRA 116

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K++L EAE++  LI+S+TEM  + ++  +SGE SS      D +T++ + +EA+LD
Sbjct: 117 FLNDKMNLAEAEAVCALITSKTEMSAKAALNSLSGEFSSKIKNIRDAVTNLIASMEANLD 176

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             +E+++   S  E L+       D+ + ++  K G+I++ G K+VI+G  NAGKSSL N
Sbjct: 177 HPDEDNMF-LSRSEKLSRFDSCIKDVQNLLNSYKTGKILQYGIKVVIIGKPNAGKSSLLN 235

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEV 296
           A+  K+ AIVTDI GTT D +   +D  G  + I+DTAGIRE +++++E  G  +T   V
Sbjct: 236 AILGKNRAIVTDIAGTTTDTVEETIDCCGIPLIITDTAGIREHSENLIEILGQAKTREAV 295

Query: 297 ENADLILLL------KEINSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL---- 342
             AD+++ L       + N  K   F K    NI  I +  KSDL   ++    +     
Sbjct: 296 CKADILIWLFDSSSEPDCNDAKIADFLKKSDLNIPIICVLNKSDLPPLFSSSLLNRENKV 355

Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNE 397
              IS+ TG G+ +L+++I  I      K  + +  + RH   L  T+  L     SL+ 
Sbjct: 356 KVKISAKTGVGIADLLDEIVKIAGVSESKNDY-LMINTRHFILLQNTLESLIRTKQSLSA 414

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQ-LLDIIFSKFCIGK 440
           KD       E L  A +SL +I G ++V+Q +LD IFS FCIGK
Sbjct: 415 KDADEIACFEALS-AQISLNEILG-INVKQDILDTIFSTFCIGK 456


>gi|189195158|ref|XP_001933917.1| tRNA modification GTPase mss1, mitochondrial precursor [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187979796|gb|EDU46422.1| tRNA modification GTPase mss1, mitochondrial precursor [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 491

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 155/483 (32%), Positives = 234/483 (48%), Gaps = 88/483 (18%)

Query: 41  KKPFPRKASLRYFFGLD-----GRILDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNG 94
           ++P PR A+LR  +  +       ILD G L++ FP+P + TGED  E HVHGG A+V  
Sbjct: 9   QRPLPRYATLRKLYAPNLPPSPTTILDSGALVLYFPAPNTVTGEDVLELHVHGGPAIVRA 68

Query: 95  IL---EELAKMPN--------LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143
           +L    E A +P         +R A PGEF+RRAF N ++DL + ESL + +S+ TE QR
Sbjct: 69  VLAAIPECATVPGGSAPMRTRIRYAEPGEFTRRAFANNRMDLPQIESLRETLSASTEQQR 128

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS---KEVLNDILFLK 200
           +LS+ G +  L++ Y  W   L   R  +EA +DFSE++      +     V   +  L+
Sbjct: 129 KLSVRGTTSSLAARYEHWRMLLLQARGELEALIDFSEDQHFDESPAVLCASVAAQVDALR 188

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
             + +H++    GE++RNG  + +LG  NAGKSSL N +  +D AIV+   GTTRDV+ +
Sbjct: 189 VLMEAHVANAVRGELLRNGISVALLGAPNAGKSSLLNRVVGRDAAIVSQEAGTTRDVVEV 248

Query: 261 DLDLEGYLVKISDTAGIRETD-------DIVEKEGIKRTFLEVENADLILLL-------- 305
            LDL G+LVKI D AG+R+          +VE+EGI+R       +D+++++        
Sbjct: 249 GLDLGGWLVKIGDMAGLRKAGLVGADVVGVVEQEGIRRAKQRALESDVVIVVQDATADMD 308

Query: 306 KEINSKKEISFPKNIDFIFIGTKSD---LYSTYTEEYDHLISSFTGEGLEELI------- 355
           +E+    +      ID I    K+D    +ST    ++  I S  G   + +        
Sbjct: 309 QEVMETAKQCVDLGIDVIVAINKTDRLPAFSTARSAWEEKIQSTLGISSDRICFISCNET 368

Query: 356 ----NKIKS---ILSNKFKKL-----PFSIPSHKRHLYHLSQTVR--------------- 388
                 IKS   IL N F+ +     P S P        L  T R               
Sbjct: 369 TPTAGNIKSFLDILQNTFQSMTAALVPDSDPDPSIWQESLGATERQRLLLSESLSHLSTF 428

Query: 389 ---YLEMASLNEKDC--------GLDII--AENLRLASVSLGKITG---CVDVEQLLDII 432
                   ++N   C         +DI+  AE LR A+ +L +ITG     DVE++L ++
Sbjct: 429 LTTVANPTTVNLAACESGAGEADEVDIVVAAECLRSAADALARITGRGDSGDVEEVLGVV 488

Query: 433 FSK 435
           F K
Sbjct: 489 FEK 491


>gi|317131002|ref|YP_004097284.1| tRNA modification GTPase TrmE [Bacillus cellulosilyticus DSM 2522]
 gi|315475950|gb|ADU32553.1| tRNA modification GTPase TrmE [Bacillus cellulosilyticus DSM 2522]
          Length = 458

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 156/464 (33%), Positives = 250/464 (53%), Gaps = 34/464 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR--KASLRYFFGLDGRIL 61
           E +TI A+ST     AI+I+R+SG     + + I + KK        ++ Y + +D    
Sbjct: 2   EMDTIAAISTPMGEGAIAIVRISGDEAVNIADLIYQGKKSLKEVETHTINYGYIVDPETN 61

Query: 62  DK---GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           DK    ++ V  +P++FT E+  E + HGGI  VN IL+ L      RLA PGEF++RAF
Sbjct: 62  DKIEEVMVSVLLAPKTFTKENIIEINCHGGIISVNRILQ-LIISHGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE + DLI ++T+    ++M  + G+LS    +    L    + +E ++D+
Sbjct: 121 LNGRIDLSQAEGVIDLIRAKTDRAMNVAMSQLEGKLSKRIQKSRQDLLETVAHVEVNIDY 180

Query: 179 SE--EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
            E   E++     KE  +D+   K DI + +   + G+I+R+G   VI+G  N GKSSL 
Sbjct: 181 PEYDAEEMTLALLKEKAHDV---KADIENLLQTAQQGKILRDGLSTVIIGRPNVGKSSLL 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L   + AIVT+I GTTRDV+   +++ G  +++ DTAGIRETDD+VEK G++R+   V
Sbjct: 238 NNLVHDNKAIVTEIAGTTRDVIEEYVNVRGVPLRLLDTAGIRETDDVVEKIGVERSRKVV 297

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHLISS--- 345
            +A+L+LL+  +N  +E++          K  + I I  K+DL      E    +++   
Sbjct: 298 GDAELVLLV--LNYNEELTESDEELFHISKGKERIIIINKTDLERKINMERVKQLANEAP 355

Query: 346 ------FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                    EG++EL   IK +      +    +  S+ RH+  L + +R +  A L   
Sbjct: 356 IVSTSLIKDEGVDELEEAIKVLFFQGDIETTDLTYVSNTRHITLLQEALRSVSEA-LEAI 414

Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D GL  D+I  ++      LG++ G    E L+D +FS+FC+GK
Sbjct: 415 DAGLPIDMIQIDITKTWELLGEVIGESVHESLIDQLFSQFCLGK 458


>gi|325694429|gb|EGD36338.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK150]
          Length = 457

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 145/459 (31%), Positives = 256/459 (55%), Gaps = 22/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG   F + + I K K     ++ +L Y   +D +
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G L +L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLFNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLCEDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           + ADL+LL+   +       ++ +   K  + I +  K+DL      E D L      IS
Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISKGSNRIVLLNKTDLEEKI--ELDQLPADAIKIS 358

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
               + ++++  +I  +   +    +   +  S+ RH+  + + +  L+  +   E    
Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|313678189|ref|YP_004055929.1| tRNA modification GTPase TrmE [Mycoplasma bovis PG45]
 gi|312950578|gb|ADR25173.1| tRNA modification GTPase TrmE [Mycoplasma bovis PG45]
          Length = 445

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 164/458 (35%), Positives = 246/458 (53%), Gaps = 39/458 (8%)

Query: 6   ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGL------ 56
           +TI A+S+G  +  AISIIR+SGP    V +      K F  K   S    FG       
Sbjct: 4   DTITAISSGGKINQAISIIRVSGPDSVNVVQ------KVFTGKVGKSHTITFGNIVDNLN 57

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +  I+D+ L + F    +F GED+ E + HGG+ + N ILE L      RLA PGEFSRR
Sbjct: 58  NNEIVDEVLCMWFLGTNNFVGEDTVEINCHGGVVITNRILE-LLLANGARLAEPGEFSRR 116

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK-LTHIRSFIEAD 175
           +F NGKIDL++AE++ DLI + T  Q +L+++   G+ +SLY Q + K L+ +   +E  
Sbjct: 117 SFLNGKIDLIKAEAINDLIHASTVSQTKLAIKKFDGK-TSLYIQELKKELSFLIGEMEVS 175

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E  D  N  + ++   +  ++N I+  I   +   +I  G KI ILG  N GKSS+
Sbjct: 176 IDYPEY-DFDNPFNDKLTARLKQIRNKINQTIELSQTSRMIFEGIKIAILGKPNVGKSSI 234

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N++ ++D AIVTDI GTTRD++      +G L K  DTAGIRET + +EK GI ++F +
Sbjct: 235 LNSILEEDKAIVTDIAGTTRDIVEAMWQYKGLLFKFVDTAGIRETKEKIEKIGIDKSFEQ 294

Query: 296 VENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
           ++ AD++L + + + K        K  +   N  +I +  K DL     +    L  S  
Sbjct: 295 IDKADVVLHIYDPSQKNDEFDEQIKSKALSLNKVYIPVINKKDLVKNIDDNL--LYVSAK 352

Query: 348 GEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGL-- 402
              L+EL  K+ S+    FK +  +     ++ R L  + Q  + L+ A LN  + G   
Sbjct: 353 QNDLDELKEKLVSV----FKNVDLNNDQYVNNSRQLALIKQAQKSLDDA-LNSIENGYDP 407

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +LR A   L  ITG  D E LLD +F  FC+GK
Sbjct: 408 DVVIIDLRQAWSHLTDITGRADNELLLDEMFKNFCLGK 445


>gi|296876607|ref|ZP_06900657.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis ATCC
           15912]
 gi|296432426|gb|EFH18223.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis ATCC
           15912]
          Length = 466

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 146/461 (31%), Positives = 257/461 (55%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K      + +L Y   +D  
Sbjct: 11  ITKEFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKDLTSVASHTLNYGHIVDPD 70

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ L      RLA PGEF++R
Sbjct: 71  KNEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LVIREGARLAEPGEFTKR 129

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E ++
Sbjct: 130 AFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVNI 189

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +++ +   + G+I+R G    I+G  N GKSSL 
Sbjct: 190 DYPEYDDVEEATTEIIREKTSEFEALLTNLLKTARRGKILREGISTAIIGRPNVGKSSLL 249

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   +
Sbjct: 250 NNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVEQIGVERSKKAL 309

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
           + ADL+LL+   +       ++ +   ++ + I +  K DL      E D L      IS
Sbjct: 310 KEADLVLLVLNASEPLTDQDRQLLEISQDSNRIILLNKVDLPEKI--EIDQLPEDHIKIS 367

Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK---D 399
               + ++++ ++I ++   +    +   +  S+ RH+  + + V  L+  ++NE     
Sbjct: 368 VLKNQNIDQIEDRINALFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLALG 425

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 426 MPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 466


>gi|120436262|ref|YP_861948.1| tRNA modification GTPase TrmE [Gramella forsetii KT0803]
 gi|205829153|sp|A0M2N6|MNME_GRAFK RecName: Full=tRNA modification GTPase mnmE
 gi|117578412|emb|CAL66881.1| tRNA modification GTPase [Gramella forsetii KT0803]
          Length = 474

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 155/475 (32%), Positives = 258/475 (54%), Gaps = 45/475 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDG-RI 60
           +TI A++T +   AI+IIR+SGP   ++    F  K KK   ++ +     G  +DG R 
Sbjct: 5   DTIVALATPSGAGAIAIIRVSGPDALEIVAPLFKAKSKKDLAKQPTHTLHLGNVMDGERT 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L  VF +P+S+TGE++ E   HG   +   I++ L +  + R A  GEF+ RAF N
Sbjct: 65  IDEVLASVFRAPKSYTGEETVELSCHGSPYIQQEIIQLLIR-KSCRSAEAGEFTLRAFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI+SE     +++M+ M G  S+   +  ++L +  S IE +LDF+E
Sbjct: 124 AKMDLSQAEAVADLINSENAASHQMAMQQMRGGFSNEIQKLREELLNFASLIELELDFAE 183

Query: 181 EEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E DV+ F++++   D++  ++  +   +     G +++NG  + I+G  N GKS+L NAL
Sbjct: 184 E-DVE-FANRDQFKDLVSKIQTVLKRLLDSFATGNVLKNGIPVAIVGEPNVGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV++I GTTRD +  ++ + G   +  DTAGIRET D+VE  GIK+TF ++  A
Sbjct: 242 LNEERAIVSEIAGTTRDTIEDEMSIGGVGFRFIDTAGIRETKDVVESIGIKKTFEKISQA 301

Query: 300 DLILLLKE-----INSKK------EI-----SFPKNIDFIFIGTKSD---------LYST 334
            +++ L +     +N ++      EI      FP+    + I  K+D         L + 
Sbjct: 302 QVVVYLVDSSQIAVNRERLQQVRIEIEKIKNKFPQK-PLLIIANKTDRLADEEIHNLKTK 360

Query: 335 YTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
             E   H       L+S+ T  G+EEL  K+   ++    +   +I ++ RH   L + +
Sbjct: 361 LEEISSHAERAQFLLLSAKTNLGVEELKEKLLEYVNTGALRNSDTIVTNSRHYAALLKAL 420

Query: 388 RYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +      LN  D   D++A ++R A    G+ITG +  + LL  IF+ FCIGK
Sbjct: 421 EEINKVEEGLN-ADLSGDLLAIDIRQALHHFGEITGEITNDDLLGNIFANFCIGK 474


>gi|22537039|ref|NP_687890.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 2603V/R]
 gi|76788077|ref|YP_329621.1| tRNA modification GTPase TrmE [Streptococcus agalactiae A909]
 gi|77410695|ref|ZP_00787054.1| tRNA modification GTPase TrmE [Streptococcus agalactiae CJB111]
 gi|32171818|sp|Q8CX13|MNME_STRA5 RecName: Full=tRNA modification GTPase mnmE
 gi|123601915|sp|Q3K1I2|MNME_STRA1 RecName: Full=tRNA modification GTPase mnmE
 gi|22533896|gb|AAM99762.1|AE014231_20 tRNA modification GTPase TrmE [Streptococcus agalactiae 2603V/R]
 gi|76563134|gb|ABA45718.1| tRNA modification GTPase TrmE [Streptococcus agalactiae A909]
 gi|77163231|gb|EAO74183.1| tRNA modification GTPase TrmE [Streptococcus agalactiae CJB111]
          Length = 458

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 148/463 (31%), Positives = 258/463 (55%), Gaps = 30/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+R+SG    ++   I + K     +  +L Y   +D  
Sbjct: 3   ITKEFDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPD 62

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L V  +P++FT ED  E + HGGIAV N IL+ + +    R+A PGEF++R
Sbjct: 63  KNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILRH-GARMAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    ++++ + G L +L      ++ +  + +E ++
Sbjct: 122 AFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++  +       +  + + +   + G+I+R G    I+G  N GKSSL 
Sbjct: 182 DYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKAL 301

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342
           E ADL+LL+  +NS + ++          K  + I +  K+DL      E + L      
Sbjct: 302 EEADLVLLV--LNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKI--EVNELPKNVIP 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEK-D 399
           IS    E ++++  +I  I  +    +       S+ RH+  + + V  L+  ++NE  +
Sbjct: 358 ISVLENENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLK--AVNEGLE 415

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 416 LGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|319744919|gb|EFV97251.1| tRNA modification GTPase TrmE [Streptococcus agalactiae ATCC 13813]
          Length = 469

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 148/463 (31%), Positives = 259/463 (55%), Gaps = 30/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD-- 57
           +  E +TI A+ST     AI I+R+SG    ++   I + K     ++ +L Y   +D  
Sbjct: 14  ITKEFDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPD 73

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L V  +P++FT ED  E + HGGIAV N IL+ + +    R+A PGEF++R
Sbjct: 74  KNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILRH-GARMAEPGEFTKR 132

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    ++++ + G L +L      ++ +  + +E ++
Sbjct: 133 AFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNI 192

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++  +       +  + + +   + G+I+R G    I+G  N GKSSL 
Sbjct: 193 DYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPNVGKSSLL 252

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 253 NNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKAL 312

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342
           E ADL+LL+  +NS + ++          K  + I +  K+DL      E + L      
Sbjct: 313 EEADLVLLV--LNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKI--EVNELPENVIP 368

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEK-D 399
           IS    E ++++  +I  I  +    +       S+ RH+  + + V  L+  ++NE  +
Sbjct: 369 ISVLENENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLK--AVNEGLE 426

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 427 LGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 469


>gi|283797196|ref|ZP_06346349.1| tRNA modification GTPase TrmE [Clostridium sp. M62/1]
 gi|291075154|gb|EFE12518.1| tRNA modification GTPase TrmE [Clostridium sp. M62/1]
 gi|295090272|emb|CBK76379.1| tRNA modification GTPase trmE [Clostridium cf. saccharolyticum K10]
 gi|295115469|emb|CBL36316.1| tRNA modification GTPase trmE [butyrate-producing bacterium SM4/1]
          Length = 458

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 250/462 (54%), Gaps = 35/462 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-------DG 58
           +TI A+STG   S I ++R+SG    +V + I +K  P  RK S    F +       + 
Sbjct: 5   DTIAAISTGMTNSGIGVVRISGEDAVKVADRIFRK--PNGRKLSEEKTFTIHYGHIYDEN 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+++   P S+T ED+ E   HGG+ V+  ILE + K    RLA PGEF++RAF
Sbjct: 63  ELIDEVLVMLMRGPRSYTAEDTVEIDCHGGVLVMRKILETVVK-NGARLAEPGEFTKRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I+++ +   + S+  ++G +S    +  +KL +  +FIE+ LD 
Sbjct: 122 LNGRIDLSQAEAVIDVINAKNDYALKSSVNQLNGAMSRKVKELREKLIYEIAFIESALDD 181

Query: 179 SEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
            E   ++ +   E+L++ L  +K +I   ++    G ++R G K VILG  NAGKSSL N
Sbjct: 182 PEHISLEGYP--EILHERLIPIKQEIEKLLATADNGRVVREGVKTVILGKPNAGKSSLMN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ AIVTD+ GTTRD L  ++ L G  + I DTAGIR+TDDIVEK G+ +     +
Sbjct: 240 VLVGEERAIVTDVAGTTRDTLEENIRLHGISLNIIDTAGIRDTDDIVEKIGVDKARQIAD 299

Query: 298 NADLILLLK------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           +ADLI+ +       + N ++ +   +    I +  K+DL    TE+    +   TG+ +
Sbjct: 300 DADLIIYVVDGSRPLDENDREIMELIRGRKAIVLLNKTDLEMLVTEKE---LEERTGQTV 356

Query: 352 EELINKIK---SILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLEMASLN-EK 398
             +  K +    +L  + ++L FS         + ++ RH   L +    L +   + E 
Sbjct: 357 IPVSAKEQKGIDVLEERIRELFFSGKIDFNDEVMITNVRHKTALREAYDSLLLVEKSIED 416

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D  + +L  A   LG I G    + L++ IFSKFC+GK
Sbjct: 417 QMPEDFFSIDLMNAYEELGTIVGEALEDDLVNEIFSKFCMGK 458


>gi|25010947|ref|NP_735342.1| tRNA modification GTPase TrmE [Streptococcus agalactiae NEM316]
 gi|77413158|ref|ZP_00789357.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 515]
 gi|32171831|sp|Q8E5T7|MNME_STRA3 RecName: Full=tRNA modification GTPase mnmE
 gi|23095326|emb|CAD46537.1| unknown [Streptococcus agalactiae NEM316]
 gi|77160776|gb|EAO71888.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 515]
          Length = 458

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 148/463 (31%), Positives = 258/463 (55%), Gaps = 30/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+R+SG    ++   I + K     +  +L Y   +D  
Sbjct: 3   ITKEFDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPD 62

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L V  +P++FT ED  E + HGGIAV N IL+ + +    R+A PGEF++R
Sbjct: 63  KNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILRH-GARMAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    ++++ + G L +L      ++ +  + +E ++
Sbjct: 122 AFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++  +       +  + + +   + G+I+R G    I+G  N GKSSL 
Sbjct: 182 DYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKAL 301

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342
           E ADL+LL+  +NS + ++          K  + I +  K+DL      E + L      
Sbjct: 302 EEADLVLLV--LNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKI--EVNELPENVIP 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEK-D 399
           IS    E ++++  +I  I  +    +       S+ RH+  + + V  L+  ++NE  +
Sbjct: 358 ISVLENENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLK--AVNEGLE 415

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 416 LGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|77406399|ref|ZP_00783459.1| tRNA modification GTPase TrmE [Streptococcus agalactiae H36B]
 gi|77174990|gb|EAO77799.1| tRNA modification GTPase TrmE [Streptococcus agalactiae H36B]
          Length = 458

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 147/458 (32%), Positives = 256/458 (55%), Gaps = 30/458 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD---GRIL 61
           +TI A+ST     AI I+R+SG    ++   I + K     +  +L Y   +D     IL
Sbjct: 8   DTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPDKNEIL 67

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ +L V  +P++FT ED  E + HGGIAV N IL+ + +    R+A PGEF++RAF NG
Sbjct: 68  DEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILRH-GARMAEPGEFTKRAFLNG 126

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++ DLI ++T+    ++++ + G L +L      ++ +  + +E ++D+ E 
Sbjct: 127 RVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNIDYPEY 186

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +DV+  ++  +       +  + + +   + G+I+R G    I+G  N GKSSL N L +
Sbjct: 187 DDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPNVGKSSLLNNLLR 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDDIVEK G++R+   +E ADL
Sbjct: 247 EEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKALEEADL 306

Query: 302 ILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFT 347
           +LL+  +NS + ++          K  + I +  K+DL      E + L      IS   
Sbjct: 307 VLLV--LNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKI--EVNELPKNVIPISVLE 362

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEK-DCGL-- 402
            E ++++  +I  I  +    +       S+ RH+  + + V  L+  ++NE  + G+  
Sbjct: 363 NENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLK--AVNEGLELGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|39998554|ref|NP_954505.1| tRNA modification GTPase TrmE [Geobacter sulfurreducens PCA]
 gi|81700815|sp|Q746Q3|MNME_GEOSL RecName: Full=tRNA modification GTPase mnmE
 gi|39985501|gb|AAR36855.1| tRNA modification GTPase TrmE [Geobacter sulfurreducens PCA]
 gi|298507496|gb|ADI86219.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34) modification GTPase
           [Geobacter sulfurreducens KN400]
          Length = 456

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 143/457 (31%), Positives = 237/457 (51%), Gaps = 25/457 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGR 59
           ++TI A+ST A    + I+R+SGP    +   + ++      + S R+++G     + G 
Sbjct: 4   EDTIAAISTAAGEGGVGIVRVSGPDAPSIARRVFRRGSNGDFE-SHRFYYGSVVDAVTGE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ + ++   P S+T ED  E   HGG  V   +LE L      RLA PGEF+RRAF 
Sbjct: 63  AVDEAMAVLMVRPRSYTREDVLEIQCHGGYLVTRRVLE-LVLAAGARLAEPGEFTRRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL++AE++ D+I ++T+    L+     G LS      + +L    + +EA +DF 
Sbjct: 122 NGRIDLVQAEAVIDVIRAKTDAALALAQHQRQGRLSQRLDTVMAELRQALALVEAFIDFP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+ D+   +   +   +      +   I+    G ++R G  ++I G  N GKSSL N L
Sbjct: 182 ED-DIDPAAQDALTVHVRKAAETVGELIAGFDEGRVLREGVAVLIAGKPNVGKSSLLNTL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVT +PGTTRD++   +++ G  +++ DTAGIR+T+DIVEKEG++ T  ++  A
Sbjct: 241 LQEKRAIVTSVPGTTRDIIEEVVNIRGLPLRMIDTAGIRDTEDIVEKEGVRLTLEKIPEA 300

Query: 300 DLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISSF 346
           DL+LL+       + + +  +S       I +  K DL     +  D L       +S+ 
Sbjct: 301 DLVLLVIDGSRPLDEDDRMILSALAGKRLILVENKCDL-PRAVQIPDELVLMPRVTVSTS 359

Query: 347 TGEGLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
            G+G++EL   I    I         +   S  RH   LS++  +L            L+
Sbjct: 360 RGDGIDELKESIFQTFIHGAAIDSREYVAVSRVRHRDLLSRSTMHLTAFEQGLASGFTLE 419

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++A  LR A  ++G++TG    + +LD+IF +FCIGK
Sbjct: 420 LLAVELRDALAAVGEVTGETTPDDILDVIFDRFCIGK 456


>gi|312867712|ref|ZP_07727918.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis F0405]
 gi|311096775|gb|EFQ55013.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis F0405]
          Length = 457

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 147/462 (31%), Positives = 259/462 (56%), Gaps = 28/462 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K+   + AS  L Y   +D 
Sbjct: 2   ITKEFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKE-LSKVASHTLNYGHIVDP 60

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ILD+ ++    SP++FT ED  E + HGGIAV N IL+ L      RLA PGEF++
Sbjct: 61  DKDEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LVIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  +++ +       +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTEIIREKTREFEALLTNLLKTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DI+E+ G++R+   
Sbjct: 240 LNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDILEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ++ ADL+LL+   +       ++ +   ++ + I +  K DL      E D L      I
Sbjct: 300 LKEADLVLLVLNASEPLTDQDRQLLEISQDSNRIILLNKVDLPEKI--EIDQLPEDYIKI 357

Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK--- 398
           S    + ++++ ++I ++   +    +   +  S+ RH+  + + V  L+  ++NE    
Sbjct: 358 SVLKNQNIDQIEDRINALFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLAL 415

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 416 GMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|329115888|ref|ZP_08244605.1| tRNA modification GTPase TrmE [Streptococcus parauberis NCFD 2020]
 gi|326906293|gb|EGE53207.1| tRNA modification GTPase TrmE [Streptococcus parauberis NCFD 2020]
          Length = 458

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 144/463 (31%), Positives = 257/463 (55%), Gaps = 30/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG     + + + K K      + ++ Y   LD  
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGSQALDIAKSVFKGKDLASVASHTINYGHILDPD 62

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++ V   P++FT ED  E + HGGIAV N IL+ L K    R+A PGEF++R
Sbjct: 63  KDEILDEVMVSVMREPKTFTREDVVEINTHGGIAVTNEILQLLIKH-GARMAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+    ++++ + G L  L      ++ +  + +E ++
Sbjct: 122 AFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLKQLIDDTRQEILNTLAQVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++  +       +  + + +   + G+I+R G    I+G  N GKSSL 
Sbjct: 182 DYPEYDDVEEMTTALMREKTQEFQTLLENLLRTARRGKILREGLSTAIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+T+DIVEK G++R+   +
Sbjct: 242 NNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRDTEDIVEKIGVERSKKAL 301

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342
             ADL+LL+  +N+ ++++          ++ + I +  K+DL      E D L      
Sbjct: 302 NEADLVLLV--LNASEKLTEQDHILLDLSQDSNRIILLNKTDLEVQI--EKDQLPSDYIE 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEK-- 398
           IS    E ++++ ++I  +  +    +       S+ RH+  + + V+ L+  ++N+   
Sbjct: 358 ISVLNNENIDQIEDRINQLFFDNAGLVEHDATYLSNARHISLIEKAVQSLQ--AVNDGLA 415

Query: 399 -DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 416 LGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|161833721|ref|YP_001597917.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri GWSS]
 gi|293977831|ref|YP_003543261.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri DMIN]
 gi|205415809|sp|A8Z5X0|MNME_SULMW RecName: Full=tRNA modification GTPase mnmE
 gi|152206211|gb|ABS30521.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri GWSS]
 gi|292667762|gb|ADE35397.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri DMIN]
          Length = 454

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 158/459 (34%), Positives = 248/459 (54%), Gaps = 34/459 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQV-----CEFICKKKKPFPRKASLRYFFGLDGRI 60
           +TI A++T +   AI++IR+SG +  ++     C F   K +       L Y      +I
Sbjct: 6   DTIVAIATPSGYGAIAVIRISGNNSIKIIKKIFCSF--SKNQIETNYIHLGYI-KYKKQI 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +DK L+ +F  P+S+TGED  E   HG I + N +L  +      RLANPGEF+ RAF N
Sbjct: 63  IDKVLIFLFKKPKSYTGEDIVEISCHGSIYIQNKLLSIIID-QGARLANPGEFTLRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL +AES+ D+++SET    + ++  M G +S L  +   ++ ++ S IE +LDFSE
Sbjct: 122 GKIDLCQAESILDIVNSETFFSHKFAINQMRGNISLLIRKLSKEIINLLSLIEFELDFSE 181

Query: 181 EED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           E    +     K++L +I+     + + I   K+G  ++NG  + I+G  N GKS+LFN 
Sbjct: 182 ENCNFINYLEFKKMLYNII---KKLKTLIRSFKIGNALKNGISVSIIGCPNVGKSTLFNK 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVE 297
           L K + +IV++I GTTR+ +   L + G   +  DTAGI   T D +EK GIK+T+ ++ 
Sbjct: 239 LLKYERSIVSNIAGTTRNYIEDSLIINGIKFRFIDTAGINNNTKDYIEKLGIKKTYSKIN 298

Query: 298 NADLIL----------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH----LI 343
            +DLIL          +LK++ S +E  +PK      I  K DL     +E+++     I
Sbjct: 299 KSDLILYVFDDLNEKFILKKVKSLQE-KYPKKKI-FIIINKYDLIKKKIKEFNYKKIFKI 356

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           S+  G G+  L+++I +  S K   L  +  + +  RH     + + YL     N     
Sbjct: 357 SAKYGYGVNNLLSEI-TFFSKKITSLKENTIVITQTRHYESFKKAIFYLYKVKKNLYSIS 415

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + ++ ++R A   LGK+TG V  E +L  IFSKFCIGK
Sbjct: 416 PEFLSIDIRTALDYLGKVTGEVTNEDILSNIFSKFCIGK 454


>gi|77407969|ref|ZP_00784719.1| tRNA modification GTPase TrmE [Streptococcus agalactiae COH1]
 gi|77173427|gb|EAO76546.1| tRNA modification GTPase TrmE [Streptococcus agalactiae COH1]
          Length = 458

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 148/463 (31%), Positives = 258/463 (55%), Gaps = 30/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+R+SG    ++   I + K     +  +L Y   +D  
Sbjct: 3   ITKEFDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPD 62

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L V  +P++FT ED  E + HGGIAV N IL+ + +    R+A PGEF++R
Sbjct: 63  KNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILRH-GARMAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    ++++ + G L +L      ++ +  + +E ++
Sbjct: 122 AFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++  +       +  + + +   + G+I+R G    I+G  N GKSSL 
Sbjct: 182 DYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARHGKILREGLSTAIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKAL 301

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342
           E ADL+LL+  +NS + ++          K  + I +  K+DL      E + L      
Sbjct: 302 EEADLVLLV--LNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKI--EVNELPENVIP 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEK-D 399
           IS    E ++++  +I  I  +    +       S+ RH+  + + V  L+  ++NE  +
Sbjct: 358 ISVLENENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLK--AVNEGLE 415

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 416 LGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|281357768|ref|ZP_06244254.1| tRNA modification GTPase TrmE [Victivallis vadensis ATCC BAA-548]
 gi|281315715|gb|EFA99742.1| tRNA modification GTPase TrmE [Victivallis vadensis ATCC BAA-548]
          Length = 442

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 147/447 (32%), Positives = 234/447 (52%), Gaps = 21/447 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           + I A +TG +  AI+I+RLSGP    +   + + +             G  G   D  L
Sbjct: 5   DNIAAPATG-IGGAITILRLSGPDALAIGGRVWRSRTSLAEAPPRTMLLGKVGP--DPAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            +   +P S+TG+D  E H HGG A     L+ L      R+A PGEF+ RAF NGK+DL
Sbjct: 62  AVYMKAPASYTGDDVVELHCHGGAAAAEQALK-LVLASGCRMAEPGEFTFRAFVNGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ D+IS+ ++M  +L+ + ++G LSS      ++L ++R+  E+ LDF +EE   
Sbjct: 121 VQAEAVGDVISAGSDMAFKLAEKQLAGALSSRLETLYEELNNLRAEAESHLDFPDEELAW 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
               + V   I  + N++   ++   +G  +R+G  +VI G  NAGKSSL N L   + A
Sbjct: 181 E---EGVPERIRAVANELKRLLATRGIGATLRDGVNLVIAGRPNAGKSSLLNRLLGMERA 237

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT IPGTTRD +     L G  V+++DTAGIR + D +E+ G++R+   +E A +   L
Sbjct: 238 IVTSIPGTTRDTIEASTVLRGLPVRLTDTAGIRSSSDPIEQLGVERSRRSIEGAQVTFWL 297

Query: 306 KEINSKK------EISFPKNIDFIFIGTKSDLYSTYT-EEYDH---LISSFTGEGLEELI 355
            + +  +      E++       I +  K DL       E D     IS+ TGEG+E+L+
Sbjct: 298 LDASGDELDLELAEMARHPAPGRIAVWNKLDLAPQRALPELDGPTVRISAKTGEGIEKLL 357

Query: 356 NKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDIIAENLRLAS 413
           +   +  +     +LP  +  + RH   L +    L  A+ +  +CG  ++    LR A 
Sbjct: 358 DAFAREAVDTPRPELP-EVAVNARHARLLEEAAGLLPDAAAH-FECGEFELAGLMLRDAL 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++G+I G      +LD IFS+FCIGK
Sbjct: 416 HTVGEIIGKTVEPDILDNIFSRFCIGK 442


>gi|226326138|ref|ZP_03801656.1| hypothetical protein COPCOM_03957 [Coprococcus comes ATCC 27758]
 gi|225205680|gb|EEG88034.1| hypothetical protein COPCOM_03957 [Coprococcus comes ATCC 27758]
          Length = 459

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 157/463 (33%), Positives = 244/463 (52%), Gaps = 27/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGL 56
           M  + +TI A+ST    S I I+RLSG   F + + I K K P      +  ++ Y + +
Sbjct: 1   MGFKTDTIAAISTAMTNSGIGIVRLSGEDAFSIIDKIYKGKSPKLLSEQKSHTIHYGYIM 60

Query: 57  DG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           DG + +D+ L+++   P S+TGED+ E   HGG+ V   ILE + K    R A PGEFS+
Sbjct: 61  DGEQTIDEVLVLLMRGPHSYTGEDTVEIDCHGGVFVTRKILETVIKY-GARPAEPGEFSK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+ISS+ +   + S+  + G + +   +  + + +  +FIE+ 
Sbjct: 120 RAFLNGRMDLSQAEAVIDIISSKNDYALQSSVNQLKGSVHNKIKEIREVILYHTAFIESA 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LD  E   V  +    +L  +  L+  I   +     G II+ G K VI+G  NAGKSSL
Sbjct: 180 LDDPEHISVDGYGDS-LLGVVKDLQQKIQCLLDTADDGRIIKEGIKTVIVGKPNAGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  ++ AIVT+I GTTRDVL  ++ L+G  + I DTAGIR+T DIVEK G+ +    
Sbjct: 239 MNVLVGEEKAIVTEIAGTTRDVLEENIQLQGVSLNIMDTAGIRDTSDIVEKIGVDKAKEN 298

Query: 296 VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------- 342
            E ADLI+ + +       N  + I   ++   + +  KSDL +   ++           
Sbjct: 299 AEKADLIIYVVDASRPLDENDHEIIEMIRDKKAVILLNKSDLSTVVDKKALETLITKPMI 358

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLN-E 397
            IS+    G+ EL + +K +  +    + F+     ++ RH   L+  +  L+    + E
Sbjct: 359 DISAKEETGIHELESTLKEMFYH--GDISFNDEVYITNIRHKTALADALSSLKKVEESIE 416

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                D    +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 417 NQMPEDFFTIDLMDAYESLGSITGETIGEDLVNEIFSKFCMGK 459


>gi|210614312|ref|ZP_03290160.1| hypothetical protein CLONEX_02374 [Clostridium nexile DSM 1787]
 gi|210150728|gb|EEA81737.1| hypothetical protein CLONEX_02374 [Clostridium nexile DSM 1787]
          Length = 457

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 158/460 (34%), Positives = 245/460 (53%), Gaps = 31/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFGLDGR-I 60
           +TI A++T    S I I+R+SG   F++ + I K KK       +  ++ Y + +DG   
Sbjct: 4   DTIAAIATAMTNSGIGIVRMSGDEAFEIIQKIYKGKKEKYFQEEKGYTIHYGYIVDGEET 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+++   P SFTGED+ E + HGG+ V+  ILE + K    R A PGEF++RAF N
Sbjct: 64  IDEVLVMIMRGPHSFTGEDTVEINCHGGVYVMKRILETVIKY-GARPAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ D+I S++E   + S+  + G +     +  +++ +  +FIE  LD  E
Sbjct: 123 GRMDLSQAEAVIDVIHSKSEYALKSSVSQLKGTVHQKIKKIREEILYHTAFIETALDDPE 182

Query: 181 EEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
              V  +  + +V+ D L  +       S    G II+ G K VI+G  NAGKSSL N L
Sbjct: 183 HISVDGYGGELKVVVDKLLEELKALLISSDN--GRIIKEGIKTVIVGKPNAGKSSLLNVL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIVTDI GTTRDVL   + L+G  + I DTAGIR T+DIVEK G+ +       A
Sbjct: 241 VGEDRAIVTDIEGTTRDVLEESIQLQGISLNIMDTAGIRNTEDIVEKIGVDKAKEHANEA 300

Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
           DLI+               +++ I  KK +      D   + +K D+  +Y E+    IS
Sbjct: 301 DLIIYVVDASRNLDENDMEIIQMIQDKKAVILLNKSDLATVVSK-DMLKSYIEKPMIEIS 359

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           +    G++EL   +K +  +    + F+     ++ RH   +      LE  +++ E + 
Sbjct: 360 AKEESGIKELEQTLKDMFFH--GDISFNDEVYITNIRHKAAIQDAYDSLEKVNMSIENNM 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 418 PEDFYSIDLLDAYESLGSITGETIGEDLVNEIFSKFCMGK 457


>gi|46198870|ref|YP_004537.1| tRNA modification GTPase TrmE [Thermus thermophilus HB27]
 gi|81830635|sp|Q72K85|MNME_THET2 RecName: Full=tRNA modification GTPase mnmE
 gi|46196493|gb|AAS80910.1| thiophene and furan oxidation protein thdF [Thermus thermophilus
           HB27]
          Length = 433

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 150/451 (33%), Positives = 240/451 (53%), Gaps = 29/451 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           M   ++ I A++T     AI ++RLSG    ++   + + K P   K   R+  G  +D 
Sbjct: 1   MRALRDPICAIATPLGKGAIGVVRLSGEGALEIAARVWRGKDPRRLKGG-RFTLGEVVDP 59

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G  +D+ LL+VF +P S+TGED  EF  HG +AV+  ++E L      R A  GEF+ 
Sbjct: 60  KTGEAIDQALLLVFRAPRSYTGEDLVEFQTHGSLAVLRRVMEVLVA-EGARPAGRGEFTF 118

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS----SLYGQWIDKLTHIRSF 171
           RA+ NGK+DL +AE++  LI +E E+ RR ++  + G LS    +L  + +D L HI++ 
Sbjct: 119 RAYMNGKLDLAQAEAVLALIEAEGELARRQALRALEGALSRRIEALENRLLDLLAHIQAL 178

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
               LD+ EE  V+   ++  L ++L    ++ + ++Q K   + + G ++ ++G  NAG
Sbjct: 179 ----LDYPEE-GVEPLEAERTLREVL---AEVEALLAQAKASRLAQKGARLALIGAPNAG 230

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NAL   + A+V+ IPGTTRD L   L+L G  +   DTAG+RET+D VE+ G++R
Sbjct: 231 KSSLLNALLGYERALVSPIPGTTRDYLEAPLELFGIPLVAVDTAGVRETEDPVERMGVER 290

Query: 292 TFLEVENADLILLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEG 350
                E ADL+L + + +  K    P        + TKSDL   + +     +SS TGEG
Sbjct: 291 ALRIAEEADLVLYVVDRSQPKPAPPPLPWARTLKVATKSDLPPAWEDPEFLPVSSLTGEG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENL 409
           L  L   ++  L  +       +   +R +  L +    LE A +L E     D++   L
Sbjct: 351 LGRLKEALREALLGREGG---EVLLTERQVEALLRARERLEEALALPE-----DLMGLAL 402

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             A+ +L  +TG    E+++  +F  FC+GK
Sbjct: 403 EEAARALALLTGKEVAEEVVARVFQNFCVGK 433


>gi|261878772|ref|ZP_06005199.1| thiophene and furan oxidation protein ThdF [Prevotella bergensis
           DSM 17361]
 gi|270334631|gb|EFA45417.1| thiophene and furan oxidation protein ThdF [Prevotella bergensis
           DSM 17361]
          Length = 458

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 153/465 (32%), Positives = 250/465 (53%), Gaps = 35/465 (7%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR---YFFGL-- 56
           ++  +TI A++T     AI I+RLSGP    +   + +  K   + A  +     +GL  
Sbjct: 3   SYRNDTIVAIATPP-GGAIGILRLSGPEAISIITALFRPAKRGMKLADAQANTLHYGLLQ 61

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
              G  +D  ++ V+ +P S+TGED  E   HG   ++   L  L      R A PGE++
Sbjct: 62  SAQGEDIDDVIVSVYRAPHSYTGEDCIEISCHGSAYILKQALHALIDA-GARQAQPGEYT 120

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RA+ NGK+DL +AE++ADLI+S  E   RL++  + G  SS   +   +L  + S IE 
Sbjct: 121 QRAYLNGKMDLSQAEAVADLIASTNEATHRLALSQLKGHFSSELSELRKQLLKMTSLIEL 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNA 230
           +LDFS+ ED++ F+ ++ L+    L + IS+HI+      + G  I+ G  + I+G +N 
Sbjct: 181 ELDFSDHEDIE-FADRDELS---CLASTISNHITSLAQSFETGNAIKKGIPVTIIGKTNV 236

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKS+L N L ++D AIV++I GTTRDV+   +D+ G   + +DTAG+R T+D +E+ GI+
Sbjct: 237 GKSTLLNQLLREDKAIVSNIHGTTRDVIEDTIDIHGVTFRFTDTAGLRHTEDQIEQMGIE 296

Query: 291 RTFLEVENADLIL-LLKEINSKKEI----SFPKNIDFIFIGTKSDLYST----YTEEYDH 341
           R + ++E A +IL ++ +  ++ E+    S  +    I +  K+DL  T      + +  
Sbjct: 297 RAYQKMEQAVIILWVVDQPPTEPELNDICSRAQGKKVIVVQNKADLAHTPLPPLPDSFSS 356

Query: 342 L-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT----VRYLEMASLN 396
           + IS+  G+GL EL   I +            I ++ RH   L++      R +E   LN
Sbjct: 357 IAISAKYGQGLHELEEAIYAAADIPHLDPNSVIVTNARHYEALTRAHTGISRVIEGLGLN 416

Query: 397 EKDCGLDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
                 D++AE+LR+    LG+IT G +   + L  IF  FCIGK
Sbjct: 417 LSG---DLLAEDLRICLEELGEITGGTITSNETLAHIFKNFCIGK 458


>gi|78187867|ref|YP_375910.1| tRNA modification GTPase TrmE [Chlorobium luteolum DSM 273]
 gi|123582460|sp|Q3B1B4|MNME_PELLD RecName: Full=tRNA modification GTPase mnmE
 gi|78167769|gb|ABB24867.1| tRNA modification GTPase trmE [Chlorobium luteolum DSM 273]
          Length = 473

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 250/463 (53%), Gaps = 33/463 (7%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRY------FFGLDGR 59
           I A++T     A++I+R+SG   F + +   +KK  K F  +A+  +       F  +G 
Sbjct: 14  IAAIATPVGVGALAIVRMSGKGVFGIADRAFRKKSGKAFSFEAAEGFTAHVGTLFDGEG- 72

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ + +VF +P SFT ED  EF  HGG  VV  +L  L      RLA PGEF+RRAF 
Sbjct: 73  MVDEVVALVFRAPSSFTMEDMVEFTCHGGPVVVRRVLAALLD-GGCRLAEPGEFTRRAFL 131

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDLL+AE++ ++I + T+   R ++  M G LS    +  + L    + +E +LDFS
Sbjct: 132 NGRIDLLQAEAIGEMIHARTDGAFRTAVTQMQGGLSRRLLEMREGLLQSCALLELELDFS 191

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE DV+  S +E+  +++ L+ ++S  +   + G ++  G   VI G  NAGKS+L N L
Sbjct: 192 EE-DVEFQSREELRGEVIRLQTELSGLVDSYQHGRLLSEGVSTVIAGRPNAGKSTLLNKL 250

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ +IV+ +PGTTRD +      +  + +++DTAG+RE+++ VE EGI+R++ ++  A
Sbjct: 251 LGEERSIVSHMPGTTRDYIEECFVYDKTMFRLTDTAGLRESEEDVEHEGIERSYRKISEA 310

Query: 300 DLILLLKEINSK----KEISFPK------NIDFIFIGTKSDLYSTYTEEYDHL------- 342
           DLIL + +++ +    + +S             I +  K+DL          L       
Sbjct: 311 DLILYMLDVSGEGFREEAVSAAALCAGHPEARMILLANKTDLVKDSALRIAALETAAGSP 370

Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNE 397
              +++ +GEG+EEL   + S++    K    S+  +  RH   L      L  A  L E
Sbjct: 371 VVPMAARSGEGIEELKLLMASMVEGLDKLHEASVLVTSLRHYEALRNASDALHNALGLIE 430

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                ++IA  LR A   +G+ITG V  E+LL+ IF +FCIGK
Sbjct: 431 GGEATELIAFELRSALDYVGEITGKVVSEELLNTIFGQFCIGK 473


>gi|227873162|ref|ZP_03991453.1| tRNA modification GTP-binding protein TrmE [Oribacterium sinus
           F0268]
 gi|227840993|gb|EEJ51332.1| tRNA modification GTP-binding protein TrmE [Oribacterium sinus
           F0268]
          Length = 456

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 163/472 (34%), Positives = 253/472 (53%), Gaps = 57/472 (12%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKAS--LRYFFGLDG-RIL 61
           TI  ++T  + S I IIR+SG    ++   I + K  +P   + S  +RY F  DG + +
Sbjct: 4   TISGIATALVESGIGIIRISGSQAVEIAGKILRTKGGRPLDIRESHRIRYGFVFDGEKEI 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+  F +P+SFTGED+ E + HGGI ++  + +   K    R A PGEFS+RAF NG
Sbjct: 64  DEVLVSTFLAPKSFTGEDTVEINCHGGILLMQKVFQATLK-AGARPAEPGEFSKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ADLI++++E   R S+  + G L     +   ++    +FIEA LD  E 
Sbjct: 123 RIDLSQAEAVADLIAAKSEDSIRSSLSLLQGSLKEKIKRMRSRILEDTAFIEAALDDPEH 182

Query: 182 EDVQNFSSK------EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
             +  FS +      E+L+DI     ++  H  +G+L   ++ G + VI+G  NAGKSSL
Sbjct: 183 ISLDGFSEQCQGHVEEILSDI----QELLKHQREGRL---LKEGIQTVIVGKPNAGKSSL 235

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L K D AIV++IPGTTRD +  D+ +    + + DTAGIRET+DIVE+ G+ R    
Sbjct: 236 LNCLVKADKAIVSNIPGTTRDTVEEDIRIGSLSLHLIDTAGIRETEDIVEEIGVNRAKEG 295

Query: 296 VENADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHL------ 342
           +E AD +LL+       E   +K ++  +    + +  K D  S    EE + L      
Sbjct: 296 IEKADCVLLVLDGSLPLEEEDRKILALLEGKKAVVLLNKMDKESILQKEELEKLSGFPVL 355

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            IS+  G G+EEL  K++ +       L FS  ++     H  +     ++A+L E    
Sbjct: 356 PISAKEGRGMEELGQKLEELFYT--GSLSFSTETY----IHSER-----QIAALEEAKSA 404

Query: 402 LDIIAENLRL-------------ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L+++ E +RL             A  +LG+I G    E L++ IF+KFC+GK
Sbjct: 405 LELVLEGIRLKLSEDFLSIDLMGAYSALGRILGEDVSEDLINEIFAKFCMGK 456


>gi|332293385|ref|YP_004431994.1| tRNA modification GTPase TrmE [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171471|gb|AEE20726.1| tRNA modification GTPase TrmE [Krokinobacter diaphorus 4H-3-7-5]
          Length = 462

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 156/466 (33%), Positives = 250/466 (53%), Gaps = 37/466 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFG--LDG-R 59
           ++TI A+++ A   AI++IR+SG    ++   I K    K    + +     G  +DG R
Sbjct: 4   QDTIVALASPAGAGAIAVIRVSGAQALEITSPIFKSVSGKVLSEQKTHTIHLGHIMDGER 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ L+ +F    S+TGE + E   HG   +   I++ L +    R A  GEF+ R+F 
Sbjct: 64  TIDEVLVSLFKGTNSYTGEPTVEISCHGSNYIQQEIIQLLLR-SGCRAAQAGEFTLRSFI 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S+ E    ++M+ M G  S+   Q   +L +  S IE +LDFS
Sbjct: 123 NGKMDLSQAEAVADLIASDNEASHHIAMQQMRGGFSNEIAQLRQELLNFASLIELELDFS 182

Query: 180 EEEDVQNFSSKEVLNDIL-----FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           EE DV+ F+ +    +++      LK  I S  +    G +I+NG  + I+G  N GKS+
Sbjct: 183 EE-DVE-FADRSQFKELIARITKVLKRLIDSFAT----GNVIKNGIPVAIVGEPNVGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL  ++ AIV+DI GTTRD +  +L + G   +  DTAGIRET D++E  GIK+TF 
Sbjct: 237 LLNALLNEERAIVSDIAGTTRDTIEDELSIGGIGFRFIDTAGIRETVDVIEGLGIKKTFE 296

Query: 295 EVENADLILLLKEINS--------KKEISFPKN----IDFIFIGTKSDLYS-TYTEEYD- 340
           +++ A +++LL   N         K EI   KN       + +  K D  S +  +E   
Sbjct: 297 KIKQAQVVILLFSANEFLANGATFKTEIEKIKNKFPLKPLVIVANKVDQVSESDVKEISN 356

Query: 341 -----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                HL+S+   +G++EL  K+   ++    +   +I ++ RH   L + +  +E    
Sbjct: 357 QIPNLHLLSAKENKGVDELKTKLLEFVNTGALRNDETIVTNSRHYDALLKALEEIEKVQY 416

Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + D   D++A ++R A    G+ITG V  ++LL  IF+ FCIGK
Sbjct: 417 GLDTDLSGDLMAIDIREALYHFGEITGQVTNDELLGNIFANFCIGK 462


>gi|289524240|ref|ZP_06441094.1| tRNA modification GTPase TrmE [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502896|gb|EFD24060.1| tRNA modification GTPase TrmE [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 462

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 240/462 (51%), Gaps = 37/462 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLD--GR 59
           +TI ++ST    + I+I+RLSGP    + E   +  KP     PR   +R  F LD  G 
Sbjct: 11  DTIASISTAWGEAGIAIVRLSGPQALDIAEKAFRGIKPLKDTPPR--YMRNGFLLDERGA 68

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ L + F +P+S+TGED  E H HGG+ V +  LE L      RLA PGEF++RAF 
Sbjct: 69  PIDEVLGVWFRAPKSYTGEDVVEIHCHGGLLVASKCLELLTAQ-GARLAEPGEFTQRAFL 127

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++  +I ++++     +   + GELS+      D L +I + +EA+LDF 
Sbjct: 128 NGRIDLTQAEAVLGVIRAKSDEALLSAARTLRGELSARVNGIYDSLLNISATLEANLDFP 187

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE D+   S  ++   +  +  ++   I + K+G+ +R+G K+ I+G  N GKSS+FNAL
Sbjct: 188 EE-DIPYLSQDDLFQSLKAIALNLQDVIYRCKVGKALRDGIKVAIVGRPNVGKSSIFNAL 246

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVT IPGTTRD++   +   G  +   DTAG+R TDD+VE  G+      +  A
Sbjct: 247 LEETRAIVTPIPGTTRDIIEGSIVHRGIPIIFMDTAGLRATDDLVETIGVSMAQKALREA 306

Query: 300 DLILLL---KEINSKKEISFP---KNIDFIFIGTKSDLYSTYT---------EEYDHLIS 344
           DL L +    E  +K+EI      KN   I    K+D+    +         E    ++S
Sbjct: 307 DLRLWIIDGSEQLTKEEIDMAMELKNHSHIVAINKADIPQVISLEDVKQMLPESEIMVLS 366

Query: 345 SFTGEGLEELINKI------KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           S+  E + EL  +I       S ++  F      I + K  L  +  ++  L        
Sbjct: 367 SYDKEAIGELKERIVKKLFKDSAINEGFNATARQIETLKSVLSCVENSISSLASGEPQ-- 424

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D++A NL  A   + ++ G    E L+ +IFS+FC+GK
Sbjct: 425 ----DLVASNLLEARYYIDRLLGRNFDEDLIHLIFSQFCVGK 462


>gi|268318299|ref|YP_003292018.1| tRNA modification GTPase TrmE [Rhodothermus marinus DSM 4252]
 gi|262335833|gb|ACY49630.1| tRNA modification GTPase TrmE [Rhodothermus marinus DSM 4252]
          Length = 462

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 154/466 (33%), Positives = 248/466 (53%), Gaps = 30/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP-RKASLRYFFGLD 57
           M    +TI A++T    +A++I+RLSGP   ++    F     +  P   A   Y    D
Sbjct: 1   MRQRGDTIAAIATARGRAALAIVRLSGPEACRIAAACFRGADLQAVPSHTAHFGYVLSPD 60

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  +D+ +  VF +P S+TGED  E   HGG      ILE L      RLA PGEF+ RA
Sbjct: 61  GEPIDQVVATVFRTPRSYTGEDVVELTCHGGDLAPQLILETLLHH-GARLAEPGEFTLRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL +AE++ADLI + +    R+S+  + G  S    +    L  + +++E +LD
Sbjct: 120 FLNGKLDLAQAEAVADLIHAGSTRAHRVSLAHLQGRYSEQLQRLRSDLLELCAYVELELD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLF 236
           FS+E DV+ F+ +  L  +L     +   + +  +LGE++R+G ++VI G  NAGKS+L 
Sbjct: 180 FSDE-DVE-FADRAQLEALLDRTGRLLDELLRSYRLGELLRDGVRVVIGGRPNAGKSTLL 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  +D AIV+ +PGTTRD +  + ++EG   +  DTAG+R T D +E EG++R    +
Sbjct: 238 NALLGQDRAIVSPVPGTTRDQIEAEAEIEGLRFRFVDTAGLRATADEIEAEGVRRAQQAI 297

Query: 297 ENADLILLLKEIN---SKKEISF-------PKNIDFIFIGTKSDLYSTYTE--EYDHLIS 344
             A++++ + ++    +  E ++          +  I +G K DL  +  E    D  + 
Sbjct: 298 AAAEVLVYVFDLTVGLAPDEQAYLTRLRTEQPALPVIVVGNKRDLLDSAPELLALDRPVL 357

Query: 345 SFTGEG-------LEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLN 396
           + +          L+ L+ ++ + ++     +  S +  ++RH  HL++  R    A+  
Sbjct: 358 ALSARRAREDAAELQPLVRELVAAVTADLGSMDDSAVVMNQRHRQHLARA-REAVQAARA 416

Query: 397 EKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D GL  D++A  LR A   LG ITG +  E +LD IFS+FCIGK
Sbjct: 417 ALDQGLSGDLLALELRRALHELGAITGEITTEDVLDQIFSRFCIGK 462


>gi|256848511|ref|ZP_05553953.1| tRNA modification GTPase TrmE [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714778|gb|EEU29757.1| tRNA modification GTPase TrmE [Lactobacillus coleohominis
           101-4-CHN]
          Length = 462

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 255/463 (55%), Gaps = 27/463 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGR 59
           N E +TI A+ST      ISIIR+SG     V + + K K    + AS    +G  +D +
Sbjct: 3   NSEFDTITAISTPVGEGGISIIRVSGEEAIPVVKKLFKGKD-LAKVASHTINYGHIIDPQ 61

Query: 60  I---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
               +D+ ++ V  +P+++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 62  TNQEVDEVMVSVMRAPKTYTKEDVVEINCHGGLLATNRILQ-LTIGAGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+   ++++  + G LS L       +  + + +E ++
Sbjct: 121 AFLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGNLSHLIKHLRKDILDVLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  +SK +    + ++  I   +   K G+++R+G    I+G  N GKSSL 
Sbjct: 181 DYPEYDAVEEMTSKLLREKAIEIRQRIEGLLKTAKQGKVLRDGLATAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  +D AIVT++ GTTRDV+   +++    +K+ DTAGIR TDD VEK G++R+   +
Sbjct: 241 NSLLHEDKAIVTNVAGTTRDVIEEYVNVNDVPLKLIDTAGIRHTDDTVEKIGVERSRQAI 300

Query: 297 ENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEY-------DHLI 343
           + ADLILLL + +       ++ I+   N   I I  KSDL +   ++        D +I
Sbjct: 301 DTADLILLLIDSSQPLTKEDQQLIAQTANKPRIIIFNKSDLPTKVDQDKLQALVDGDKVI 360

Query: 344 S-SFTG-EGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           + S T  EG++EL   I  +  N+         + ++ RH+  L Q  + L    L   D
Sbjct: 361 TASMTKHEGIDELSAAISHLFFNEGIESNQNNVMVTNARHIGLLRQADQALGDV-LKGLD 419

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D++  ++  A   LG+ITG    ++LLD +FS+FC+GK
Sbjct: 420 DGMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK 462


>gi|15839367|ref|NP_300055.1| tRNA modification GTPase TrmE [Xylella fastidiosa 9a5c]
 gi|14195286|sp|Q9P9U3|MNME_XYLFA RecName: Full=tRNA modification GTPase mnmE
 gi|9108024|gb|AAF85563.1|AE004083_2 thiophene and furan oxidation protein [Xylella fastidiosa 9a5c]
          Length = 451

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 147/434 (33%), Positives = 226/434 (52%), Gaps = 19/434 (4%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           I IIRLSG S  +            PR A    F  +   ++D GL + FP+P SFTGED
Sbjct: 24  IGIIRLSG-SLIKTIATGLGMTTLRPRYAHYTRFLDVQDEVIDDGLALWFPAPHSFTGED 82

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HG   ++  +L     +   R A+PGEFS RAF NGK+DL++AE++AD+I +  
Sbjct: 83  VLELQGHGSPLLLRQLLTRCLDL-GARQAHPGEFSERAFLNGKLDLIQAEAIADMIGAAD 141

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
               R +   + G  S        +L  +R  +EA +DF+EE  +      ++   +  L
Sbjct: 142 LRAARAARRSLDGVFSRRCEALAQQLIRLRIHVEATIDFAEES-LDTLDRAQIRTSLQTL 200

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             +++  +   + G+ + +G   V++G  N GKSSL NAL   D AIVTD+PGTTRD L 
Sbjct: 201 NVELTQLLRDAEHGKRLCDGLYTVLVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLR 260

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-----KEINS---- 310
             +   G    + DTAG+RE  D +E+EG++RT  E++ ADL L++      +I S    
Sbjct: 261 ESVHFHGLEFVLVDTAGLREEGDAIEREGMRRTLNELQRADLALVVLDACDPQIGSLALA 320

Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNK-F 366
               S P+    ++I  K DL +      D     +S+ TG GLE L  +++++L  +  
Sbjct: 321 DALTSVPR---VLWIHNKLDLLTEPPSALDTDVIPVSAMTGAGLETLKTRLRTLLLGETV 377

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
           + +     +  RH+  L +T  ++  A+       L++ AE LRLA  +LG+I G +  +
Sbjct: 378 ETIEGEFSARLRHVQALQRTAAHVTDANAQFAYEHLELTAEELRLAYKALGEINGSMSPD 437

Query: 427 QLLDIIFSKFCIGK 440
           +LL  IFS FCIGK
Sbjct: 438 ELLGRIFSNFCIGK 451


>gi|154173921|ref|YP_001408433.1| tRNA modification GTPase TrmE [Campylobacter curvus 525.92]
 gi|205829128|sp|A7GYZ1|MNME_CAMC5 RecName: Full=tRNA modification GTPase mnmE
 gi|112802942|gb|EAU00286.1| tRNA modification GTPase TrmE [Campylobacter curvus 525.92]
          Length = 444

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 142/450 (31%), Positives = 241/450 (53%), Gaps = 17/450 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           ++ + + I A++T     +I IIRLSG +  Q    + K     PR A+L   + LD   
Sbjct: 2   ISSKNDDIAAIATAHGIGSICIIRLSGSTALQSALKLTKISNLSPRLATLTKIYSLDKEF 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ ++I F +P SFTGED  EFH HGG  V + IL EL K+  +RLA PGEFS+RAF N
Sbjct: 62  LDEAIMIYFKAPASFTGEDVVEFHTHGGFVVADMILNELVKL-GVRLAEPGEFSKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++  LI+S +E   ++    M G+LS    Q  ++L    +F+E  +D+++
Sbjct: 121 DKLDLAKAEAIQGLINSRSEAAAKILARQMRGDLSRYVEQMRNELVKTLAFVETSIDYAD 180

Query: 181 EEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           ++   +   + + + +    K D    IS+ + G I  +G+K+ I+G  N GKSS+ N+L
Sbjct: 181 DDLPDDLLEQIKTMLEANAAKLDKIVQISEQRRGLI--DGFKVAIVGKPNVGKSSILNSL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + AI++D  GTTRD +  +  +  +LV+I DTAGIR+    +EK GI+ +   +E A
Sbjct: 239 LSYERAIISDEAGTTRDRIEENFKVGTHLVRIIDTAGIRKNAGKIEKIGIRYSLAAIEEA 298

Query: 300 DLILLLKEINSKKEISFPKNIDFI--------FIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           D++L + + +S  +    + ++ +        FI  KSDL   +  +    I     +G 
Sbjct: 299 DIVLAVFDSSSASDEQDERIVELVKNSGKKVFFILNKSDLAFKFDLDLSPSIKISAKKGA 358

Query: 352 EELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           +E++ +++  L S    ++  S     +     S  ++     +LN     L++ A  + 
Sbjct: 359 DEIVGRLRDYLDSQDSSEMMLSSNHQIKQCKDASVAIKR----ALNLLGDELELFAYEIN 414

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  ++  IT   +  ++LD +FS FC+GK
Sbjct: 415 TAIAAISAITRSFERSEILDEMFSHFCLGK 444


>gi|71275539|ref|ZP_00651825.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Xylella fastidiosa Dixon]
 gi|71902449|ref|ZP_00684393.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Xylella fastidiosa Ann-1]
 gi|170731351|ref|YP_001776784.1| tRNA modification GTPase TrmE [Xylella fastidiosa M12]
 gi|71163839|gb|EAO13555.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Xylella fastidiosa Dixon]
 gi|71727824|gb|EAO30073.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Xylella fastidiosa Ann-1]
 gi|167966144|gb|ACA13154.1| thiophene and furan oxidation protein [Xylella fastidiosa M12]
          Length = 451

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 145/434 (33%), Positives = 227/434 (52%), Gaps = 19/434 (4%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           I IIR+SG     +   +       PR A    F  +D +++D GL I FP+P SFTGED
Sbjct: 24  IGIIRISGSQIKTIATGLGMTTLR-PRYAHYTRFLDVDDQVIDDGLAIWFPAPHSFTGED 82

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HG   ++  +L     +   R A PGEFS RAF NGK+DL++AE++AD+I +  
Sbjct: 83  VLELQGHGSPLLLRQLLTRCLDL-GARQARPGEFSERAFLNGKLDLIQAEAIADMIGAAD 141

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
               R +   + G  S        +L  +R  +EA +DF++E  +      ++   +  L
Sbjct: 142 LRAARAARRSLDGVFSRRCEALAQQLVRLRIHVEATIDFADES-LDTLDRAQIRTSLQTL 200

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             +++  +   + G+ + +G   V++G  N GKSSL NAL   D AIVTD+PGTTRD L 
Sbjct: 201 NVELTQLLRDAEHGKRLCDGLYTVLVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLR 260

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-----KEINS---- 310
             +   G    + DTAG+RE  D +E+EG++RT  E++ ADL L++      +I S    
Sbjct: 261 ESVHFHGLEFVLVDTAGLREEGDAIEREGMRRTLNELQRADLALVVLDACDPQIGSLALA 320

Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNK-F 366
               S P+    ++I  K DL +      D     +S+ TG GL+ L  +++++L  +  
Sbjct: 321 DALTSVPR---VLWIHNKLDLLTEPPSALDTDVIPVSAMTGAGLDTLKTRLRTLLLGETV 377

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
           + +     +  RH+  L +T  ++  A+       L++ AE LRLA  +LG+I G +  +
Sbjct: 378 ETIEGEFSARLRHVQALQRTAAHVTDANAQFAYEHLELTAEELRLAYKALGEINGSMSPD 437

Query: 427 QLLDIIFSKFCIGK 440
           +LL  IFS FCIGK
Sbjct: 438 ELLGRIFSNFCIGK 451


>gi|313681708|ref|YP_004059446.1| tRNA modification GTPase trme [Sulfuricurvum kujiense DSM 16994]
 gi|313154568|gb|ADR33246.1| tRNA modification GTPase trmE [Sulfuricurvum kujiense DSM 16994]
          Length = 447

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 141/453 (31%), Positives = 239/453 (52%), Gaps = 26/453 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T     +ISI+RLSG    ++   + +K    PR A+L      DG ++D+ +
Sbjct: 3   ETIAAIATANGIGSISILRLSGDRSLEIALKLTRKSNLQPRYATLASLHHNDGTLIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGE+  EF  HGG  V   +L  +      RLA PGEFS+RAF NG++DL
Sbjct: 63  VIYFQAPRSFTGEEVVEFQCHGGYVVAESLLRAVLH-EGARLAEPGEFSKRAFLNGRLDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---E 182
            +AE+ A LI ++++   R+    M GEL        D L  I ++ E  +D++EE   E
Sbjct: 122 TQAEATAALIEAKSDDAARILARQMKGELRGYIEGIRDSLLEILAYSEVVIDYAEEDLPE 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV +    ++ N    +K+ +S  +   +    +  G+++ I+G  N GKSSL NAL   
Sbjct: 182 DVVDQIEVKLEN----IKHTLSRTLESSRRRSGLMQGFRVAIIGKPNVGKSSLLNALLDY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +   + +  +L+++ DTAGIR   D +E+ GI+R+   +ENAD++
Sbjct: 238 ERAIVSDIAGTTRDTIEEQVRIGTHLIRLVDTAGIRNASDEIERIGIERSIAAIENADVV 297

Query: 303 LLLKEINSKKEIS------------FPKNIDFIFIGTKSDLYSTY---TEEYDHLISSFT 347
           + L   ++ +EI             +     FI I  KSDL   +   + E+ H I    
Sbjct: 298 IAL--FDASREIDEEDRSIIDLVERYRSEKPFICIVNKSDLPQVFDMSSIEHYHPIRLSC 355

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
            +  + L++ + S++ ++       + S  R +      VR ++ A    +D  L+  + 
Sbjct: 356 KQDTQVLVDTLSSLMDHENDGEEMMLIS-ARQISATEGAVRSIDEAYEPLRDGELEFFSF 414

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  A   +  I+   +++++ D +F +FC+GK
Sbjct: 415 HINAAIRYVASISRPYELDEMFDRMFGQFCLGK 447


>gi|114778886|ref|ZP_01453683.1| tRNA modification GTPase [Mariprofundus ferrooxydans PV-1]
 gi|114550855|gb|EAU53421.1| tRNA modification GTPase [Mariprofundus ferrooxydans PV-1]
          Length = 393

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/397 (33%), Positives = 220/397 (55%), Gaps = 9/397 (2%)

Query: 48  ASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107
           A+L  +    G  LD+G+ + FP P S+TGED  E   HGG  ++  +L  L ++     
Sbjct: 2   ATLDAWLDHAGERLDQGITLYFPGPASYTGEDVVELQGHGGPVLLQALLSRLYEL-GCEP 60

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A  GEF+RRA E+GK+DL +AE++A  I + T    + +   + GE      + + +LT 
Sbjct: 61  AQAGEFTRRAVEHGKLDLSQAEAVAACIDAATVRAGKQAQRQLQGEFGIHIDRLMQRLTS 120

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILG 226
           + + +EA LDF EEE +++    ++ N ++  +   I   ++   LGE +  G  + ++G
Sbjct: 121 LVAHVEASLDFPEEE-IRDLYFSDLRNKMVETVVAPIKEMLASAPLGERLFEGATVALVG 179

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N GKSSL NAL+ ++ AIV+ + GTTRD+L +D ++ G  ++++DTAG+R++ D+VE 
Sbjct: 180 APNVGKSSLLNALSGRERAIVSHLEGTTRDLLDVDFEVNGIPLRLTDTAGLRDSHDVVEI 239

Query: 287 EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISS 345
           EG++R       AD+ L + + +     S   + D + +  K DL S    +EY  L S 
Sbjct: 240 EGVRRALQVASTADVTLFVADASRPDTWSPSIHADLLLM-NKVDLESGDIPDEYIQL-SV 297

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLD 403
            +GEGL EL +++ S L +        + +H+RH   L + +  +E  +  L  ++  LD
Sbjct: 298 ISGEGLNELRSRLASFLGDIQMGDEGMMVTHERHRLVLVEALECIESGLGCLGNEEL-LD 356

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + A   R A   L  I G  DVE +LD +FS+FCIGK
Sbjct: 357 LAAMQWRRAWGLLAGILGIGDVEYILDRVFSEFCIGK 393


>gi|220933188|ref|YP_002510096.1| tRNA modification GTPase TrmE [Halothermothrix orenii H 168]
 gi|219994498|gb|ACL71101.1| tRNA modification GTPase TrmE [Halothermothrix orenii H 168]
          Length = 463

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 157/462 (33%), Positives = 252/462 (54%), Gaps = 32/462 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL-----DG 58
           +TI A+ST    + I  IR+SG     V + I K  K K      +    +G       G
Sbjct: 7   DTIAAISTPFGTAGIGKIRVSGSGAIDVADRIFKGVKDKSLKNVNTYTAHYGYVVEPESG 66

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ ++IV   P SFTGED  EF  HGG+  +  +LE L      RLA PGEFS+RAF
Sbjct: 67  KMVDEVIVIVMRGPHSFTGEDVVEFDCHGGMIPLKKVLEVLLN-NGARLAEPGEFSKRAF 125

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE + ++I+S+T+    +++  ++G+LS+      +++  + + +EA +DF
Sbjct: 126 LNGRIDLAQAEGIMEVINSKTDKGLDVAINHLTGKLSNKITGIKNEVIRLLAHLEAAIDF 185

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E+E ++ F   E+ N I  +K++I   ++    G+I + G K VI+G  N GKSSL N+
Sbjct: 186 PEDE-IEGFEPDELGNRINGIKDEIEDLLATSDQGKIYQEGLKAVIVGKPNVGKSSLLNS 244

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDIPGTTRD++   +++ G  ++I DTAGIRET D+VEK G+++T   +  
Sbjct: 245 LVQENRAIVTDIPGTTRDIIEEYINIRGIPLRIIDTAGIRETRDMVEKIGVEKTRNSLRE 304

Query: 299 ADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--YDHL-------I 343
           ADL+L + ++         K     K+   I +  K+DL     E+   DH        I
Sbjct: 305 ADLVLFMLDVAQGLTEEDIKIYDMVKDKPMIVLVNKTDLDREIDEKKIKDHFKEHPLLWI 364

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA--SLNEKDC 400
           S     GL+ L   I   + ++   +  +I  +  RH   + + V  +     SLN+   
Sbjct: 365 SVKEEIGLDNLKEAIIEEVVSEEVNVSDNIFITRVRHKDAMKKAVHSINRVKESLNQ--- 421

Query: 401 GL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           GL  D +  +L+    +LG+ITG    E ++D IF+ FC+GK
Sbjct: 422 GLPYDFLTIDLKDCLDALGEITGETVTEDIIDRIFADFCLGK 463


>gi|325955496|ref|YP_004239156.1| tRNA modification GTPase mnmE [Weeksella virosa DSM 16922]
 gi|323438114|gb|ADX68578.1| tRNA modification GTPase mnmE [Weeksella virosa DSM 16922]
          Length = 463

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 155/468 (33%), Positives = 249/468 (53%), Gaps = 42/468 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--------FFGLD 57
           +TI A++T     AI++IR+SGP   +    + + K  F  K+ L          +F  +
Sbjct: 5   DTICALATANGMGAIAVIRVSGPEAIEKVNTLFRSK--FGEKSLLEVDSHTVHLGYFIDE 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ L  VF  P S+TGED  E   HG + +   +LE L K   +R ANPGE++ RA
Sbjct: 63  EVLIDEALFTVFRGPNSYTGEDVVEISTHGSMYIQQKVLEVLNK-NGIRNANPGEYTFRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL +AE++ADLI+S+++    ++M+ M G  S+      +++ +  + IE +LD
Sbjct: 122 FWNGKMDLTQAEAVADLIASDSKASHEIAMKQMRGGFSNQIKDLREQIVNFAALIELELD 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL-GEIIRNGYKIVILGHSNAGKSSLF 236
           FSEE DV+ F+ +  L  +L    ++   +S   + G +I+NG  + I+G  NAGKS+L 
Sbjct: 182 FSEE-DVE-FADRTKLYALLDELQEVLKRLSDSFVYGNVIKNGVPVAIVGAPNAGKSTLL 239

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  ++ AIV+D+ GTTRD +   L + G   +  DTAGIRE  D +E+ GI++TF ++
Sbjct: 240 NALLNEERAIVSDVEGTTRDTIEEVLYINGIGFRFIDTAGIREAGDKIEQIGIEKTFEKI 299

Query: 297 ENADLILLLKEINSKKEISFPKNIDFIF--------IGTKSDLYS-------TYTEEYDH 341
           + A ++L L + N   +      ++ +         I  K D+ S          +E+  
Sbjct: 300 DKASIVLYLYDSNIMADNQIANQLEALISKGKIVFNIANKIDIESDRDVIPQAIKDEFKE 359

Query: 342 LI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
           +I         +  E L+E +     +L+N       +I S+ RHL  L +T+  +    
Sbjct: 360 VIHLEISAKEKYNIETLKEKLFDQVQLLNNT----DDTIVSNSRHLDALQKTLAQVHKIR 415

Query: 395 LNEKD-CGLDIIAENLRLASVSLGKITGCVDV-EQLLDIIFSKFCIGK 440
              +D    D++A +LR     LG ITG +DV E +L  IF KFCIGK
Sbjct: 416 QGMQDGIPTDLLAMDLREGLDYLGAITGEIDVDEDILGTIFGKFCIGK 463


>gi|291547599|emb|CBL20707.1| tRNA modification GTPase trmE [Ruminococcus sp. SR1/5]
          Length = 458

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 159/464 (34%), Positives = 253/464 (54%), Gaps = 34/464 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK------KPFPRKASLRYFFGLD 57
           E+ TI A+ST    S I I+R+SGP  F++   + + K      K  P   ++ Y +  D
Sbjct: 2   EETTIAAISTAMSASGIGIVRISGPEAFEIASGVYRSKGGKKSLKNVPSH-TIHYGYIYD 60

Query: 58  GR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ++D+ L++    P ++TGED+ E   HGG+  +  +LE + K   + +A PGEF++R
Sbjct: 61  NEEMVDEVLVMAMRGPRTYTGEDTIEIDCHGGVLAMKKVLETVLKNGAI-IAEPGEFTKR 119

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ D+I S+ E   + S+  + G +     Q  +KL +  ++IE+ L
Sbjct: 120 AFLNGRIDLSQAEAVMDVIQSKNEYSLKNSVGQLKGSVRKNVQQIREKLLYHIAYIESAL 179

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D  E  D+  +S +E+   +   K  I + +     G+II+ G + VILG  NAGKSSL 
Sbjct: 180 DDPEHYDLTGYS-EELEQIVAEEKEKIQNLLKTAGDGKIIQEGIRTVILGKPNAGKSSLL 238

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTDI GTTRDVL   ++L G  +KI+DTAGIR+T+DIVEK G+ +     
Sbjct: 239 NLLLGEDRAIVTDIAGTTRDVLEEYINLHGITLKIADTAGIRQTEDIVEKIGVSKAKEMA 298

Query: 297 ENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------- 342
            +ADLIL + +       N ++ I   +    I + +K+DL S    + + L        
Sbjct: 299 ADADLILYVVDSSVPLDENDEEIIKILQEKKTIVLYSKTDLESAI--DIEDLKSRINQPV 356

Query: 343 --ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL--NEK 398
             IS+    G+ +L  KI+ +  +   ++ F+   +  +  H  + ++  E  SL  N  
Sbjct: 357 IPISAKEETGITDLEEKIREMFFS--GEIDFNDEVYITNERHRQELLKAQESLSLVENSI 414

Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + G+  D  + +L  A  SLG+I G    E L++ IFSKFC+GK
Sbjct: 415 ESGMPEDFYSIDLTDAYESLGRILGESLGEDLVNEIFSKFCMGK 458


>gi|160902854|ref|YP_001568435.1| tRNA modification GTPase TrmE [Petrotoga mobilis SJ95]
 gi|205415791|sp|A9BHZ7|MNME_PETMO RecName: Full=tRNA modification GTPase mnmE
 gi|160360498|gb|ABX32112.1| tRNA modification GTPase TrmE [Petrotoga mobilis SJ95]
          Length = 452

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 146/457 (31%), Positives = 247/457 (54%), Gaps = 30/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A+S+     AI ++R+SG     + +   K+KK  P+K    + +  +G  +D+  
Sbjct: 4   DTIVAISSPIGTGAIGVVRISGDHVKNIIDQALKRKKYTPKKMYYGWLYDKEGEKVDEIT 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            +    P S+TGED  E   HGG  +   +L  + K    R A PGEF++RA  NGK+DL
Sbjct: 64  WVYHSQPHSYTGEDMLEIFCHGGKLITYAVLNTIIKY-GARQALPGEFTKRAVLNGKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ ++I+SETE+  + S   +   +S       + L +I + IE ++D+ +  D++
Sbjct: 123 IKAEAVNNVITSETEISLKASFNQLKNAVSEKIKDIKNSLLNISAQIEVEMDYPD--DIE 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
            F   ++ N ++ + N ++  + + + G I   G + VI+G  N+GKS+L NAL +KD A
Sbjct: 181 -FEDHDLKNKLVHIVNSMNQLLKEAENGIIAVEGVRTVIVGKPNSGKSTLLNALLRKDRA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDIPGTTRD +  +L++ G  +++ DTAGIR T+D +E+ GI+RT   ++N+ LIL +
Sbjct: 240 IVTDIPGTTRDTIEENLNINGIYIRLIDTAGIRYTEDTLERVGIERTINSIKNSHLILFV 299

Query: 306 KE----INSKKEISFPK-----NIDFIFIGTKSDLYSTYTEEY---------DHLISSFT 347
            +       + E+ + K     +   I I  KSD  +     Y         D +I S  
Sbjct: 300 LDGTTPFTQEDELIYNKLNELGDKTVIIILNKSDSPNFTENNYLSLKQKNPNDFVIISAK 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLN--EKDCGLD 403
              ++ L NKI       F+K+    P  +++R    L  +  ++ + ++N  EK    D
Sbjct: 360 NGAIKNLENKIYEKF---FEKVNIEEPTLTNQRQKITLESSKEFV-LNAINSLEKGFSND 415

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           II  ++R A   + +++G    E+LLD IFS FC+GK
Sbjct: 416 IIMYDVRKALEKIYELSGENYTEELLDKIFSTFCVGK 452


>gi|332983463|ref|YP_004464904.1| tRNA modification GTPase trmE [Mahella australiensis 50-1 BON]
 gi|332701141|gb|AEE98082.1| tRNA modification GTPase trmE [Mahella australiensis 50-1 BON]
          Length = 460

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 157/463 (33%), Positives = 245/463 (52%), Gaps = 36/463 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLD---G 58
           TI A+ST      I I+RLSGP    + + I      +K K  P + S+ Y    D   G
Sbjct: 5   TIAAISTPIGEGGIGIVRLSGPKAIDIADSIFINIKGRKIKDAPNR-SILYGHIKDPDTG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R +D+ L+ +   P S+TGED  E   HGG+  +  +LE +A      LA PGEF++RAF
Sbjct: 64  RDIDEVLVSIMRGPHSYTGEDVVEISGHGGMLPLRRVLE-VAVREGAVLAQPGEFTKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS----SLYGQWIDKLTHIRSFIEA 174
            NG+IDL +AES+ D+IS++T++    S+  + G+LS     +    +D LTHI + I  
Sbjct: 123 LNGRIDLAQAESVMDIISAKTDVALTSSVMQLEGKLSRSIEKIRVALLDVLTHIEALI-- 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
             D+ EE DV   S+K++   +    + I   ++    G IIR G K  I+G  N GKSS
Sbjct: 181 --DYPEE-DVDELSTKDMRKKLADEYDSIEKLLATADTGRIIREGLKTAIIGRPNVGKSS 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL K D AIVTDIPGTTRD++   +++ G  + I DTAGIRE  D +E+ GI+RT  
Sbjct: 238 LLNALLKADRAIVTDIPGTTRDIIEDYVNVNGIALNIIDTAGIREAADEIERIGIERTRD 297

Query: 295 EVENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
            V  ADL++ + +               I+SKK I      D   + T++++ +   +  
Sbjct: 298 TVYRADLVIFVLDGSQPLHQDDRAIASLISSKKAIVVLNKSDLGRVVTEAEVNAVLPDAP 357

Query: 340 DHLISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
              +S   G GL++L   I  ++   K      ++ ++ RH   L      L+    +  
Sbjct: 358 VIEMSLKEGYGLDDLEGTITDMVYHGKAIASDEAMITNVRHKEALISAAEALQRCLFSID 417

Query: 399 D-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D   +D+++ +L+ A  ++G I+G    ++++D IF +FC+GK
Sbjct: 418 DGMPMDLVSIDLKDAIEAMGLISGKTVEDEVVDRIFERFCVGK 460


>gi|254432026|ref|ZP_05045729.1| tRNA modification GTPase TrmE [Cyanobium sp. PCC 7001]
 gi|197626479|gb|EDY39038.1| tRNA modification GTPase TrmE [Cyanobium sp. PCC 7001]
          Length = 456

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 140/441 (31%), Positives = 235/441 (53%), Gaps = 29/441 (6%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRYFFG--LDGRI---LDKGLLIVFP 70
           +++I+R+SGP      E I  +    P +    S R  +G  +D      +D+ LL++  
Sbjct: 26  SVAIVRISGPRA----EAIGARLFRAPGQQVWDSHRVLYGHVVDPATEEPVDEALLLLMR 81

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
           +P SFT E   E H HGG+  V  +LE L      R A PGEFS+RAF +G++DL  AE+
Sbjct: 82  APRSFTRETVVELHGHGGLVAVQRVLE-LVLAAGARRALPGEFSQRAFLHGRLDLTRAEA 140

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +++L+++ +    +L+M G+ G L    G   ++L    + +EA +DF  EED+     +
Sbjct: 141 ISELVTARSRRAAQLAMAGLDGGLQRRIGALRERLLDQLAELEARVDF--EEDLPPLDGE 198

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
            V+  +  ++ ++   +++ + G ++R G ++ I+G  N GKSSL N L++++ AIVTD+
Sbjct: 199 AVVAALTAVRRELEQLVAEARQGALLREGLRVAIVGRPNVGKSSLLNRLSRRERAIVTDL 258

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT-------FLEVENADLIL 303
           PGTTRD+L  +L L+G  + + DTAGIR TDD VE+ GI R+          V   DL  
Sbjct: 259 PGTTRDLLESELVLDGVPLTLLDTAGIRPTDDAVEQLGIARSREALAAADAVVLVFDLTA 318

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISSFTGEGLEELINK-IKSI 361
                +++     P  +  + +G K+DL       + D  IS+ TG G + L+ + ++  
Sbjct: 319 GWTPADAELRALVPDGVPLLLVGNKADLDPGPAAAQADVAISALTGAGSDALVEQLLQRC 378

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTV--RYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
            + + + +  ++   +R L   +       LE A+   +    D    +LR A   LG+I
Sbjct: 379 GAAEVQGVQVALNDRQRDLAARAAVALTGSLEAAA---QQLPWDFWTIDLRGAVRCLGEI 435

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG    E +LD +F++FCIGK
Sbjct: 436 TGEEVSEAVLDRVFARFCIGK 456


>gi|300362683|ref|ZP_07058859.1| tRNA modification GTPase TrmE [Lactobacillus gasseri JV-V03]
 gi|300353674|gb|EFJ69546.1| tRNA modification GTPase TrmE [Lactobacillus gasseri JV-V03]
          Length = 461

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 151/466 (32%), Positives = 256/466 (54%), Gaps = 44/466 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-- 59
           +TI A+ST      ISI+RLSG     +   + K     K P     ++ Y   +D +  
Sbjct: 9   DTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGADLTKVP---THTIHYGHIVDPKTQ 65

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ ++ V  +P++FT ED  E + HGG+ V N IL+ L      R+A+PGEF++RAF
Sbjct: 66  EVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174
            NG+IDL +AES+ D++ ++T+  R+++M  ++G    ++ ++  + +D + H     E 
Sbjct: 125 MNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLEKIKTMRQELLDTMAHE----EV 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E  D+ + +S+E+      +   I   +   + G+IIRNG    I+G  N GKSS
Sbjct: 181 NIDYPEY-DMDDLTSQEMKKKAQEVLKQIEQLLQTAQEGKIIRNGLATAIVGRPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L + D AIVTDI GTTRD L   + ++G  +K+ DTAGI  T+D VEK G++R+  
Sbjct: 240 LLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVERSKK 299

Query: 295 EVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
            ++ ADL+LL+ + +       K+ +    N   I I  K DL +  ++E   +I + T 
Sbjct: 300 AIKEADLVLLILDASQDLTAEDKRLLDLTANKKRIIILNKQDLGTKISQE---MIKNLTD 356

Query: 349 EGL---EELINKIKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLE--MAS 394
             +     L  K    L N  +KL FS         + +++R    L++  + LE  ++ 
Sbjct: 357 NPIIVTSILKQKNMDALENAIEKLFFSGIENSQNQILVTNQRQAGLLAKAKQSLEDVISG 416

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +N+    LD++  +L+ A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 417 INDA-MPLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|16330488|ref|NP_441216.1| tRNA modification GTPase TrmE [Synechocystis sp. PCC 6803]
 gi|2495120|sp|P73839|MNME_SYNY3 RecName: Full=tRNA modification GTPase mnmE
 gi|1652979|dbj|BAA17896.1| thiophen and furan oxidation protein [Synechocystis sp. PCC 6803]
          Length = 456

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 147/464 (31%), Positives = 243/464 (52%), Gaps = 39/464 (8%)

Query: 5   KETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG----- 55
           ++TI A++T  +P   +I ++RLSGP    + +  F     + +    S R  +G     
Sbjct: 4   EDTIAAIATAIVPQQGSIGVVRLSGPQSLTIAKTLFDAPGNQTW---ESHRILYGHVRHP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
                +D+ LL++  +P S+T ED  EF  HGGI +    + +L      RLA PGEFS 
Sbjct: 61  QTKAAIDEALLLLMLAPRSYTKEDVVEFQCHGGI-MPVQQVLQLCLQQGARLAQPGEFSF 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AES+++L+ +++     +++ G+ G+L+       +    I + +EA 
Sbjct: 120 RAFLNGRLDLTQAESISELVGAQSPQAAAIALAGLQGKLAQPIRDLRNTCLDILAEVEAR 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF  E+D+       +   +  L   +   ++  + GE++R G K+ I+G  N GKSSL
Sbjct: 180 IDF--EDDLPPLDEDSIRQQLQNLYQQLEDILNTAQRGELLRTGLKVAIVGQPNVGKSSL 237

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NA ++ D AIVTD+PGTTRDV+   L +EG  +++ DTAGIRET D VE+ G++R+   
Sbjct: 238 LNAWSRTDRAIVTDLPGTTRDVVESQLVVEGIPIQVLDTAGIRETADQVEQIGVERSRKA 297

Query: 296 VENADLILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
            + ADL+LL                +++  +  I     ID      ++DL S   E  +
Sbjct: 298 AQQADLVLLTVDAHQGWTEADQLIYEQVKDRPLILVINKIDL----GRADLVSYPPEITN 353

Query: 341 HLISSFTGE-GLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
            ++++     G+E L N I   ++      + L F+I   +  +   +Q        ++ 
Sbjct: 354 TVLTAAAANLGIEALENAIIEQVNQTNLSPQNLDFAINQRQEAVLTEAQLALKQLQQTMA 413

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+   LD    +LRLA  +LG++TG    E +LD IFS+FCIGK
Sbjct: 414 EQ-LPLDFWTIDLRLAINALGQVTGETVTESVLDRIFSRFCIGK 456


>gi|329943265|ref|ZP_08292039.1| tRNA modification GTPase TrmE [Chlamydophila psittaci Cal10]
 gi|332287844|ref|YP_004422745.1| tRNA modification GTPase [Chlamydophila psittaci 6BC]
 gi|313848416|emb|CBY17420.1| probable tRNA modification GTPase TrmE [Chlamydophila psittaci RD1]
 gi|325507350|gb|ADZ18988.1| tRNA modification GTPase [Chlamydophila psittaci 6BC]
 gi|328814812|gb|EGF84802.1| tRNA modification GTPase TrmE [Chlamydophila psittaci Cal10]
 gi|328915105|gb|AEB55938.1| tRNA modification GTPase TrmE [Chlamydophila psittaci 6BC]
          Length = 443

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 153/449 (34%), Positives = 235/449 (52%), Gaps = 20/449 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FPRKASLRYFFGLDGRILD 62
           + +TI A++T     +I+I+R+SGP   Q+ + I     P F    +       +G+ +D
Sbjct: 3   KNDTIAAIATPPGEGSIAIVRVSGPEAIQITDKIFSGSVPSFSSHTAHLGTVSYNGQQID 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LL++  +P SFTGED  E   HGG    + IL  L      R A PGEFS+RAF NGK
Sbjct: 63  QTLLLIMRAPRSFTGEDVIELQCHGGYFSCSQILAALIAE-GARPALPGEFSQRAFLNGK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AE++ ++I++++     ++     G  S    Q    +    +FIE   DF E+E
Sbjct: 122 IDLIQAEAIQNIIAADSLDAFHIAQNHFQGHFSKKVQQISSLIIESLAFIEVLADFPEKE 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                     LN+ + +  D+ +   QG+    I  G  I++ GH NAGKSSL NAL  K
Sbjct: 182 QPDMEDPLHRLNEAILIIEDLIASFDQGQK---IAQGTSIILAGHPNAGKSSLLNALTNK 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDIPGTTRD+L     L+G  +++ D+AG RET++ +E+EGI+R    +E ++ I
Sbjct: 239 NRAIVTDIPGTTRDILEETWMLQGKRIRLIDSAGQRETNNPIEQEGIERALAAMEESEAI 298

Query: 303 LLLKEINSKKEISFPKNI---DFIFIGTKSDLYSTY---TEEYDHLISSFTGEGLEELIN 356
           L + ++ ++     P+ +     + +  KSDL +     T      +S+ TGEG+ EL  
Sbjct: 299 LWVMDV-TQPPPPLPEILMRKPSLLLWNKSDLGTPPHIETTLPQLAVSAKTGEGIFELKQ 357

Query: 357 KIKSILS----NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRL 411
            I+  +      K  K+ F + S  RH   L Q   YL  A    +     + IA  LR 
Sbjct: 358 FIQKWMQKQQLGKNAKV-FLVSS--RHHTILQQMRTYLLSAQEGLQHQFPPEFIALELRQ 414

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  + G ++G    E +L  IFS+FCIGK
Sbjct: 415 ALQTTGNLSGSEINETILGEIFSRFCIGK 443


>gi|154483917|ref|ZP_02026365.1| hypothetical protein EUBVEN_01623 [Eubacterium ventriosum ATCC
           27560]
 gi|149735408|gb|EDM51294.1| hypothetical protein EUBVEN_01623 [Eubacterium ventriosum ATCC
           27560]
          Length = 459

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 159/461 (34%), Positives = 242/461 (52%), Gaps = 32/461 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFG--LDG-R 59
           +TI A+S+ A  S I IIR+SG    +V + I     K K      S    +G  +DG +
Sbjct: 5   DTIAAISSAAGNSGIGIIRVSGDEAIEVVDKIFRPANKNKKLANVESHTVHYGHIMDGDK 64

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+ L+IV  +P S+TGED+ E   HGG+ ++  +L+ + K    R A PGEF++RAF 
Sbjct: 65  TLDQVLVIVMKNPHSYTGEDTVEIDCHGGMLILKKVLDLVLK-NGARTAEPGEFTKRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI+S+ +     S+E + G +S         + +  +FIE+ LD  
Sbjct: 124 NGRIDLSQAEAVMDLINSKNDFALNSSIEQLKGGVSDAIKDIRKDIIYHIAFIESALDDP 183

Query: 180 EEEDVQNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           E   +  +  +  E+LN+ +   N IS  ++    G I++ G K VILG  NAGKSSL N
Sbjct: 184 EHISLDGYDEEITEMLNENI---NKISKLVNSFDNGRIMKEGIKTVILGKPNAGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            +  +D AIVTDI GTTRD L  +++  G  +KI DTAGIR+T+D+VE+ G+ +     +
Sbjct: 241 LMLGEDRAIVTDIEGTTRDTLEENINFNGLSLKIIDTAGIRDTEDLVERIGVNKAKEIAK 300

Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
             DLI+               ++K IN K+ I      D   +    DL      +   L
Sbjct: 301 EGDLIIYVVDGSRELDDNDREIIKLINDKQAIILVNKSDMDTVINIDDLKKDSNRDV-IL 359

Query: 343 ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            S   GEG+++L  +I+++  S K         ++ RH   L   +  L+    N  D G
Sbjct: 360 FSVKNGEGMDQLEEEIRNMFYSGKVTYNDQVYITNARHKEALENALESLKQVK-NSVDAG 418

Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  D  + +L  A   LG I G    + L++ IFSKFC+GK
Sbjct: 419 MPEDFYSIDLMDAYTDLGLIIGESVEDDLVNEIFSKFCMGK 459


>gi|239624142|ref|ZP_04667173.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520528|gb|EEQ60394.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 459

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 157/460 (34%), Positives = 250/460 (54%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFP----RKASLRYFFGLDG- 58
           +TI A++TG   S I I+R+SG   F V + + + K  +  P    R  ++ Y F  DG 
Sbjct: 4   DTIAAIATGMGNSGIGIVRISGDEAFTVIDKLYRNKDGRQVPISQARSHTVHYGFIYDGD 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+++   P S+T ED+ E   HGGI +V  ILE +      R A PGEF++RAF
Sbjct: 64  EKVDEALVLIMKGPHSYTAEDTVEIDCHGGILMVRKILEAVIH-AGARTAEPGEFTKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++AD+I++  E   + S+  +SG +S    +   ++ +  +FIE+ LD 
Sbjct: 123 LNGRIDLSQAEAVADVINATNEYALKSSVSQLSGSVSKRIKELRSQILYQIAFIESALDD 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E   +  +  +E+L  +  +  ++   ++    G ++  G K VILG  NAGKSSL N 
Sbjct: 183 PEHISLDGYD-EELLARLDPMVEEVKRLLASADDGRVMTEGVKTVILGKPNAGKSSLMNV 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVT+I GTTRD L   + L+G  + + DTAGIR+T+D+VEK G+ R      +
Sbjct: 242 LLGEERAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDVVEKIGVDRARRAAGD 301

Query: 299 ADLILLLKEIN-----SKKEI-SFPKNIDFIFIGTKSDL-YSTYTEEYDHL-------IS 344
           ADLI+ + + +     S +EI  F +    I +  KSDL      EE + +       +S
Sbjct: 302 ADLIIFVVDGSRPLDESDREIMDFIRGRKSIILLNKSDLELVVGKEELEGMSGQKVIPVS 361

Query: 345 SFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400
           +   +G+EEL  +IK +  +   KF    +   ++ RH   L Q +R L M   + +D  
Sbjct: 362 AKEEQGIEELEQEIKRLFYHGELKFNDQVY--ITNVRHKEALEQALRSLLMVKGSIEDRM 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D  + +L  A   LG ITG    + L++ IF++FC+GK
Sbjct: 420 PEDFYSIDLMNAYEQLGLITGEAVDDDLVNEIFARFCMGK 459


>gi|55980900|ref|YP_144197.1| tRNA modification GTPase TrmE [Thermus thermophilus HB8]
 gi|81821865|sp|Q5SJS7|MNME_THET8 RecName: Full=tRNA modification GTPase mnmE
 gi|55772313|dbj|BAD70754.1| thiophene and furan oxidation protein [Thermus thermophilus HB8]
          Length = 432

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 147/443 (33%), Positives = 238/443 (53%), Gaps = 21/443 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GR 59
           K+ I A++T     AI ++RLSG    ++   + + K P   K   R+  G  +D   G 
Sbjct: 4   KDPICAIATPPGKGAIGVVRLSGEGALEIAARVWRGKDPRRLKGG-RFALGEVVDPKTGE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +L+VF +P S+TGED  EF  HG  AV+  ++E L      R A  GEF+ RA+ 
Sbjct: 63  AIDQAILLVFRAPRSYTGEDLVEFQTHGSPAVLRRVMEVLVAE-GARPAGRGEFTFRAYL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++  LI +E E+ RR ++  + G LS       ++L ++ + I+A LD+ 
Sbjct: 122 NGKMDLAQAEAVLALIEAEGELARRQALRALEGALSRRIEALENRLLNLLAHIQALLDYP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE  V+   ++  + ++L    ++ + ++Q K   + + G ++ ++G  NAGKSSL NAL
Sbjct: 182 EE-GVEPLEAERTIREVL---AEVEALLAQAKASRLAQKGARLALIGAPNAGKSSLLNAL 237

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + A+V+ IPGTTRD L   L+L G  +   DTAG+RET+D VE+ G++R     E A
Sbjct: 238 LGYERALVSPIPGTTRDYLEAPLELFGIPLVAVDTAGVRETEDPVERMGVERALGIAEEA 297

Query: 300 DLILLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           DL+L + + +  K    P        + TKSDL   + +     +SS TGEGL+ L   +
Sbjct: 298 DLVLYVVDRSQPKPAPPPLPWARTLKVATKSDLPPAWEDPEFLPVSSLTGEGLDRLKEAV 357

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLG 417
           +  L  +       +   +R +  L +    LE A SL E     D++   L  A+ +L 
Sbjct: 358 REALLGREGG---EVLLTERQVEALLRARERLEEALSLPE-----DLMGLALEEAARALA 409

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
            +TG    E+++  +F  FC+GK
Sbjct: 410 LLTGKEVAEEVVARVFQNFCVGK 432


>gi|329919799|ref|ZP_08276750.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 1401G]
 gi|328937146|gb|EGG33574.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 1401G]
          Length = 461

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 155/467 (33%), Positives = 264/467 (56%), Gaps = 46/467 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGR-I 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G     D + +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYDNKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176
           G+IDL +AES+ D+I ++T+  R+++M+ + G    E+  L  + ++ + H     E ++
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL 
Sbjct: 183 DYPEY-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L+K++ AIVT+I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDH------- 341
             +DL+LLL  INS +E++          ++   I I  K+D  +  T++          
Sbjct: 302 TESDLVLLL--INSSEELTEEDQKLLELTQDKKRIVILNKADQVAKITKKDIQKITDSPI 359

Query: 342 -LISSFTGE---GLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMA 393
             IS    +   GLEE I  +  + I  +K + +     +++R    L +  R L   + 
Sbjct: 360 VTISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMV----TNQRQNDLLRKAKRSLIEAIE 415

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++N+ +  LD++  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 416 AIND-NMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461


>gi|213650174|ref|ZP_03380227.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 279

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 112/282 (39%), Positives = 172/282 (60%), Gaps = 3/282 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAND 279


>gi|167762630|ref|ZP_02434757.1| hypothetical protein BACSTE_00987 [Bacteroides stercoris ATCC
           43183]
 gi|167699736|gb|EDS16315.1| hypothetical protein BACSTE_00987 [Bacteroides stercoris ATCC
           43183]
          Length = 461

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 150/464 (32%), Positives = 244/464 (52%), Gaps = 33/464 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFG--LDG- 58
           ++TI A++T A   AI  IR+SGP   ++   I       +           FG   DG 
Sbjct: 3   QDTICAIAT-AQGGAIGCIRVSGPEAIEITSCIFTPAATNRELGDSKPYTLTFGRIYDGS 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P S+TGE+S E   HG   ++  +L+ L K    R+A PGE+++RAF
Sbjct: 62  EVIDEVLVSLFRAPHSYTGENSTEITCHGSAYILQKVLQLLIK-NGCRMAAPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       D+L H  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELATLRDQLLHFTSLIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+ E+++     E+      ++  I+  ++   +G  I+NG  + I+G +NAGKS+L N 
Sbjct: 181 SDHEELEFADRSELCQLANNIEKVIARLVNSFNVGNAIKNGVPVAIIGETNAGKSTLLNV 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRD++   +++ G   +  DTAGIRET D +E  GI+RTF +++ 
Sbjct: 241 LLNEDKAIVSDIHGTTRDIIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQKLDQ 300

Query: 299 ADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLY----STYTEEYDHLISS 345
           A+++L ++   N++ +I+       P+      I +  K+DL     ++  + +   + S
Sbjct: 301 AEIVLWMIDATNAQAQITQLAGQLLPRCERKQLILVYNKADLVDNIQNSIPDNFPDNVQS 360

Query: 346 FT-----GEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMAS--LN 396
            T      E +EEL   +  I S     +  +  I ++ RH   L+  +  +      L 
Sbjct: 361 ITLSAKKREHIEELQRML--ITSAHLPTITQNDVIVTNVRHYEALNNALEAIHRVQEGLT 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G D I++++R     L  I G V  + +L  IF  FCIGK
Sbjct: 419 NNISG-DFISQDIRECIFHLSDIAGEVTNDMVLQNIFQHFCIGK 461


>gi|167972273|ref|ZP_02554550.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|167974296|ref|ZP_02556573.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|167988962|ref|ZP_02570633.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|195867400|ref|ZP_03079404.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273386|ref|ZP_03205922.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554346|ref|YP_002284431.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225550729|ref|ZP_03771678.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225551093|ref|ZP_03772039.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|184209425|gb|EDU06468.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188018680|gb|EDU56720.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188998243|gb|EDU67340.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195660876|gb|EDX54129.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198249906|gb|EDY74686.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209541847|gb|ACI60076.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225378908|gb|EEH01273.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225379883|gb|EEH02245.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 438

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 144/446 (32%), Positives = 234/446 (52%), Gaps = 22/446 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILDK 63
           TI A++T  +  AI IIR+SGP  F++   I   K    +K + + ++     + ++LD+
Sbjct: 3   TIVALATAPMNCAIHIIRISGPQAFEMINKISTTK---IKKETFKIWYTTLKDNDQVLDE 59

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L+  F  P++FTGED  E + HGG+ V N I++ L K    + A  GEFSRRA  N K+
Sbjct: 60  VLVNTFVGPKTFTGEDLVEINCHGGVIVANLIIKILIKY-GCQPAQRGEFSRRALLNKKM 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH----IRSFIEADLDFS 179
           DL + E++ +L++++ E    LS++G+ G L     Q I    H    I   IE ++D+ 
Sbjct: 119 DLSKIEAINNLVNAKNE----LSVKGVIGALLGRVSQSISDFKHELFMIIGQIEVNIDYP 174

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+   +  +   +L L   I   I Q K    I  G K++I+G  N GKS+L NAL
Sbjct: 175 EYDDVEQVDAINLKQRLLVLNEKIKKIIDQSKKFLPINKGIKVLIIGKPNVGKSTLLNAL 234

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +  AIVTDIPGTTRDV+   ++++   + I DTAGI  T+D VE  GI +    +   
Sbjct: 235 CNEQKAIVTDIPGTTRDVIESSINIDNITLNILDTAGIHSTNDFVENLGINKAKELINKV 294

Query: 300 DLILLLKEINSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           DL+L L   N+++++      K+   + + TK DL   Y++  D +  +     ++ LI+
Sbjct: 295 DLVLYLVPANNQQDLELYDLIKDQKHLLVYTKKDLIDQYSD--DQIYINAKDNDIQALID 352

Query: 357 KIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASV 414
           KIK +    +F      +   +R +  L      ++ A  N EK   +D++  +L   ++
Sbjct: 353 KIKELFYVQEFDNANIDVLQSQRQIGILENVNYLIDNAITNLEKGDTVDLVVADLEFCNL 412

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            L ++ G       LD +F  FC+GK
Sbjct: 413 RLNELLGIGSEYDFLDDLFKNFCVGK 438


>gi|331702698|ref|YP_004399657.1| tRNA modification GTPase mnmE [Lactobacillus buchneri NRRL B-30929]
 gi|329130041|gb|AEB74594.1| tRNA modification GTPase mnmE [Lactobacillus buchneri NRRL B-30929]
          Length = 464

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 156/464 (33%), Positives = 252/464 (54%), Gaps = 33/464 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRI- 60
           E +TI A+ST      ISIIR+SG     V + + + K    + AS    +G  +D    
Sbjct: 7   EFDTIAAISTPPGEGGISIIRISGEEALDVAKKLYRGKD-LDKVASNTINYGHIIDPDTN 65

Query: 61  --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ +L V  +P ++T ED  E + HGGI   N IL+ LA     R+A PGEF++RAF
Sbjct: 66  EEVDEVMLSVMRAPHTYTEEDIVEINCHGGIVATNRILQ-LALSHGARMAEPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL ++E++ DLI ++T+   + ++  + G LS L       +  + + +E ++D+
Sbjct: 125 LNGRIDLSQSEAVMDLIEAKTDRSMKAAINQLDGNLSHLIKHLRQDILDVLAQVEVNIDY 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +SK +      +   I   +   K G+I+R G    I+G  N GKSSL N 
Sbjct: 185 PEYDDVETMTSKLLREKATDVHARIVQLLKTAKQGKILREGLATSIIGRPNVGKSSLLNN 244

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVTD+PGTTRDVL   +++ G  +K+ DTAGIR+T D VEK G+ R+   + +
Sbjct: 245 LLHEDKAIVTDVPGTTRDVLEEYVNVHGVPLKLVDTAGIRDTTDKVEKIGVDRSRKAINS 304

Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345
           ADL+LL+   +       KK +S  ++   I I  K+DL +   ++         ++IS+
Sbjct: 305 ADLVLLVLNASEPLTDEDKKLLSATQDKQRIIILNKTDLPTKIDQDQIKSLADGQNVIST 364

Query: 346 --FTGEG---LEELINKI---KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
                +G   LEELI K+   + I S++   +     ++ RH+  L+Q  + LE      
Sbjct: 365 SAIKADGLTQLEELIAKMFFDEGIESSQNDIM----VTNARHIGLLNQAKQALEDVVKGL 420

Query: 398 KD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D   +D++  ++      LG+ITG    ++L+D +FS+FC+GK
Sbjct: 421 DDGMPVDLVQIDMTRCWDFLGEITGDSYQDELIDQLFSQFCLGK 464


>gi|312872669|ref|ZP_07732734.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2062A-h1]
 gi|311091711|gb|EFQ50090.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2062A-h1]
          Length = 461

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 261/465 (56%), Gaps = 42/465 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176
           G+IDL +AES+ D+I ++T+  R+++M+ + G    E+  L  + ++ + H     E ++
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL 
Sbjct: 183 DYPEY-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L+K++ AIVT+I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEE-----YDHLI 343
             +DL+LLL  INS +E++          ++   I I  K+D  +  T++      D  I
Sbjct: 302 TESDLVLLL--INSSEELTEEDQKLLELTQDKKRIIILNKADQVAKITKKDIQKITDSPI 359

Query: 344 SSFT------GEGLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
            + +        GLEE I  +  + I  +K + +  +    +  L   ++      + ++
Sbjct: 360 VTISVLKKQNMTGLEEAIKSLFLQGITDSKSEVMVTN--QRQNDLLRKAKQSLIEAIEAI 417

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           N+ +  LD++  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 418 ND-NMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461


>gi|326793316|ref|YP_004311137.1| tRNA modification GTPase mnmE [Clostridium lentocellum DSM 5427]
 gi|326544080|gb|ADZ85939.1| tRNA modification GTPase mnmE [Clostridium lentocellum DSM 5427]
          Length = 460

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 155/460 (33%), Positives = 254/460 (55%), Gaps = 27/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----DG 58
           ++TI A+ST      I IIR+SG    ++ +  F    KK   +  S    +G      G
Sbjct: 4   EDTIAAISTPIGVGGIGIIRVSGKETIEIVDKVFRAANKKSLKKVDSHTITYGHIVSDSG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           ++LD+ L+++   P +FT ED  E + HGG   +N +L E+ K    R+A+ GEF++RAF
Sbjct: 64  KVLDEVLIMLMKGPRTFTREDIIEINCHGGPVPLNAVLMEVIK-AGARMADNGEFTKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL + E++ D+I S+TE+    ++  + G LS    ++ D L  + + IE  +D+
Sbjct: 123 LNGRIDLAQVEAIMDIIESKTELSLSQAVGQLEGNLSKKIKEYQDTLIQVIARIEVSIDY 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +D +  ++ +   ++  L  ++   +     G++IR G K  I+G  N GKSSL NA
Sbjct: 183 PEYDDDEPITN-DFEAELKDLLEELRELLRTADTGKMIREGVKTAIVGRPNVGKSSLLNA 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDIPGTTRDV+   L+++G   ++ DTAGIRET+DIVEK G++R+   +E 
Sbjct: 242 LLEENKAIVTDIPGTTRDVVEAYLNIDGIPFQLLDTAGIRETEDIVEKIGVERSKSSIEE 301

Query: 299 ADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEY--DHL-------I 343
           ADL+L+L +     ++  +EI    KN   I+I  K+DL +  T+E    H        +
Sbjct: 302 ADLVLMLVDSHVGLLDKDQEILEQVKNKHVIYIFNKTDLENNITQEMLETHFSNGEVIKV 361

Query: 344 SSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           S+    GL EL   +K  ++         +  S++R    L   ++ LE   ++  + GL
Sbjct: 362 SAKEQSGLNELRQAMKHFVIKGSAAVHNEATISNQRQKQSLINAIKSLEKV-IDAIELGL 420

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D +A +L  A   LG I G    E++++ +FS+FC+GK
Sbjct: 421 PEDCLAIDLHDAFGHLGMIVGESLKEEIINQLFSRFCLGK 460


>gi|71901963|ref|ZP_00684014.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Xylella fastidiosa Ann-1]
 gi|71728268|gb|EAO30448.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Xylella fastidiosa Ann-1]
          Length = 451

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 144/434 (33%), Positives = 226/434 (52%), Gaps = 19/434 (4%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           I IIR+SG     +   +       PR A    F  +D +++D GL I FP+P SFTGED
Sbjct: 24  IGIIRISGSQIKTIATGLGMTTLR-PRYAHYTRFLDVDDQVIDDGLAIWFPAPHSFTGED 82

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HG   ++  +L     +   R A PGEFS RAF NGK+DL++AE++AD+I +  
Sbjct: 83  VLELQGHGSPLLLRQLLTRCLDL-GARQARPGEFSERAFLNGKLDLIQAEAIADMIGAAD 141

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
               R +   + G  S        +L  +R  +EA +DF++E  +      ++   +  L
Sbjct: 142 LRSARAARRSLDGVFSRRCEALAQELVRLRIHVEATIDFADES-LDTLDRAQIRTSLQTL 200

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             +++  +   + G+ + +G   V++G  N GKSSL NAL   D AIVTD+PGTTRD L 
Sbjct: 201 NVELTQLLRDAEHGKRLCDGLYTVLVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLR 260

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-----KEINS---- 310
             +   G    + DTAG+R   D +E+EG++RT  E++ ADL L++      +I S    
Sbjct: 261 ESVHFHGLEFVLVDTAGLRGEGDAIEREGMRRTLNELQRADLALVVLDACDPQIGSLALA 320

Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNK-F 366
               S P+    ++I  K DL +      D     +S+ TG GL+ L  +++++L  +  
Sbjct: 321 DALTSVPR---VLWIHNKLDLLTEPPSVLDTDVIPVSAMTGAGLDTLKTRLRTLLLGETV 377

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
           + +     +  RH+  L +T  ++  A+       L++ AE LRLA  +LG+I G +  +
Sbjct: 378 ETIEGEFSARLRHVQALQRTAAHVTDANAQFAYEHLELTAEELRLAYKALGEINGSMSPD 437

Query: 427 QLLDIIFSKFCIGK 440
           +LL  IFS FCIGK
Sbjct: 438 ELLGRIFSNFCIGK 451


>gi|288801153|ref|ZP_06406609.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332087|gb|EFC70569.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 456

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 168/474 (35%), Positives = 256/474 (54%), Gaps = 52/474 (10%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--- 55
           MN+  +TI A++T A   AI +IR+SG +   +    F     K     A+ R  FG   
Sbjct: 1   MNN-NDTICALAT-AKGGAIGVIRISGENAINIVAKCFEAASGKELEEMAAQRIIFGNIK 58

Query: 56  -LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             +G I+D+ L+ VF +P S+TGE++ E   HG   ++N IL+ L K    R A PGEF+
Sbjct: 59  DEEGNIIDEVLVSVFRAPHSYTGENTIEISCHGSTYIINTILQNLIKR-GCRQALPGEFT 117

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +R+F NGK+DL +AE++ADLI+S  +   +L++  + G  SS   +   KL  I S IE 
Sbjct: 118 QRSFLNGKMDLSQAEAVADLIASTNKATHQLALGQLRGYFSSELTELRKKLLKITSLIEL 177

Query: 175 DLDFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           +LDFS++ DV  F+ +E L ++   +   I +     + G+ I+NG  + I+G +N GKS
Sbjct: 178 ELDFSDQ-DV-TFADREELAELAQHINKKIKTLAKSFETGQAIKNGISVAIIGKTNVGKS 235

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           +L N L K++ AIV+DI GTTRDV+   +++     +  DTAGIR TDD VE  GI+RT+
Sbjct: 236 TLLNCLLKEERAIVSDIHGTTRDVIEDTIEINNITFRFIDTAGIRNTDDTVENLGIERTY 295

Query: 294 LEVENADLIL-LLKEINSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
            ++  A +IL ++ EI +K+EI   +    N   I +  KSD              SF  
Sbjct: 296 KKLSEAIIILWVVDEIPTKEEIVEMQKQTINKKLIIVCNKSDEKQL----------SFPI 345

Query: 349 EGLEELINKIKSILSNKFKK----------LPFSIP---------SHKRHLYHLSQTVRY 389
           +G+++ I  I SI S KFK+              IP         ++ RH   L +    
Sbjct: 346 DGIKD-IAPIVSI-SAKFKENIECLEETIYTAADIPDVHENDVIVTNARHYEALIRAQES 403

Query: 390 LE--MASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
           +E  +  +N  D   D+++E+LR   VSL +ITG  +   ++L  IF  FCIGK
Sbjct: 404 IERVIEGIN-NDLSGDLLSEDLRQCLVSLAEITGGFITSNEVLGNIFKHFCIGK 456


>gi|322372979|ref|ZP_08047515.1| tRNA modification GTPase TrmE [Streptococcus sp. C150]
 gi|321278021|gb|EFX55090.1| tRNA modification GTPase TrmE [Streptococcus sp. C150]
          Length = 456

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 142/457 (31%), Positives = 254/457 (55%), Gaps = 20/457 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR 59
           +  E +TI A+ST     AI I+RLSG     +   + K K        ++ Y   ++  
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDAIAIANKVFKGKNLETVDSHTINYGHIVEND 62

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ ++ V  +P++FT ED  E + HGG+AV N IL+ L +    R+A PGEF++RAF
Sbjct: 63  DIIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIR-SGARMAEPGEFTKRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ DLI ++T+    +++  + G L +L      ++ +  + +E ++D+
Sbjct: 122 LNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKNLINNTRQEILNTLAQVEVNIDY 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  ++  V       +  + + ++  K G+I+R G    I+G  N GKSSL N 
Sbjct: 182 PEYDDVEEVTTNLVREKTQEFQVLLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLNN 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDD+VEK G++R+   +E 
Sbjct: 242 LLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALEE 301

Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDH---LISSF 346
           ADL+LL+  +N+ + ++          +N + I +  K+DL  +   EE       IS  
Sbjct: 302 ADLVLLV--LNNSEPLTEQDRTLLDISQNSNRIILLNKTDLPQAIQLEELPEDVIPISVL 359

Query: 347 TGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
             E ++++  +I  +  +     +   +  S+ RH+  + + +  LE  +   E    +D
Sbjct: 360 KNENIDKIEERINQLFFDNAGLVEKDATYLSNARHISLIEKALESLEAVNQGLELGMPVD 419

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456


>gi|27262204|gb|AAN87383.1| thiopene and furan oxidation protein ThdF [Heliobacillus mobilis]
          Length = 472

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 160/477 (33%), Positives = 247/477 (51%), Gaps = 52/477 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----DG 58
           +TI AV+T      I I+R+SGP   +V +  F+ +         S     G      DG
Sbjct: 6   DTIAAVATAIGEGGIGIVRVSGPDAKEVIQKVFLPRYGSSVDSWTSHTLHLGHVVHPDDG 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L      P SFT ED  EFH HGG   V   L  + +   +RLA PGEF+RRAF
Sbjct: 66  HVIDEVLCAWMAGPHSFTTEDVVEFHCHGGSVPVRETLNAVLR-AGVRLAEPGEFARRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR-------SF 171
             G++DL +AE++  +I S+T        +G+   +S L GQ   +++ +R       + 
Sbjct: 125 LGGRLDLAQAEAIIGIIRSKTR-------DGLGAAVSQLEGQLSRRISKVRNEILAVLAH 177

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           +EA +DF EE D+ + + + +  D+  +  +I   +++ + G +++ G++ VI G  N G
Sbjct: 178 LEALIDFPEE-DLPDITPERLSKDVQAIFMEIQRLLNRSQTGRVLQEGWRTVIAGRPNVG 236

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NAL  +  AIVTDIPGTTRD +   +++ G  +++ DTAGIRET+D+VEK G+++
Sbjct: 237 KSSLLNALLDEQRAIVTDIPGTTRDAIEEFIEIGGIPLRLVDTAGIRETEDLVEKIGVEK 296

Query: 292 TFLEVENADLILLLKE-----INSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEY----- 339
           T   +E ADL+L + +      N  +E+  S  +    + +  KSDL     +E      
Sbjct: 297 TREYMEKADLVLYVLDGSDELSNDDEELLRSLQERPSVVLV-NKSDLAIRRLDEQQLRAV 355

Query: 340 --DHLI---SSFTGEGLEELINKIKSILSNKFKKLPFSI--PSHKR-HLYHLSQTVRYLE 391
             D LI   S+  G GLEEL  +I+ ++         SI  P+  R  L   ++    LE
Sbjct: 356 IGDKLIIYMSAKEGWGLEELAVQIRRLVYKDEAGNSLSIMDPTESRLDLITQARHREALE 415

Query: 392 MAS--LNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A   +     GL      D +  +L+ A  +LG+I G    E +LD IFS FCIGK
Sbjct: 416 RAQSHIRSVQSGLEMALSPDFLTIDLKAAWEALGEIIGETVGEDILDKIFSSFCIGK 472


>gi|328958785|ref|YP_004376171.1| tRNA modification GTPase MnmE [Carnobacterium sp. 17-4]
 gi|328675109|gb|AEB31155.1| tRNA modification GTPase MnmE [Carnobacterium sp. 17-4]
          Length = 462

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 151/464 (32%), Positives = 248/464 (53%), Gaps = 26/464 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG---- 55
           M  E ETI A+ST     AI I+RLSG    ++ + + K   K    + S    +G    
Sbjct: 1   MTLEFETIAAISTPPGEGAIGIVRLSGEQAIEIADRVYKSGSKALAEQKSHTIHYGHIEN 60

Query: 56  -LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                 +D+ ++ V   P++FT ED  E + HGGI  VN +L+ + +    RLA PGEF+
Sbjct: 61  PKTNETIDEVMVSVMREPKTFTREDVVEINCHGGITSVNQVLQCVLQ-NGARLAEPGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG+IDL +AE++ DLI ++T+    ++++ + G LS+L       +    + +E 
Sbjct: 120 KRAFLNGRIDLSQAEAVMDLIRAKTDRAMHVALKQLDGNLSNLIRNLRLDILDTLAQVEV 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  +SK ++     +K  I   +     G+I+R+G    I+G  N GKSS
Sbjct: 180 NIDYPEYDDVEEMTSKLLIEKAKLVKASIQQLLETASQGKILRDGLATAIIGRPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIVTDI GTTRDV+   + ++G  +K+ DTAGIRET+DI+E+ G++R+  
Sbjct: 240 LLNYLLDEEKAIVTDIAGTTRDVIEEYISVKGVPLKLVDTAGIRETEDIIERIGVERSRQ 299

Query: 295 EVENADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI---- 343
            + +ADL+LL+        I  K  I        I I  K DL +     E + L+    
Sbjct: 300 ALSDADLVLLVFNQSEPLTIEDKALIEATSQHHRIIILNKMDLPNKLDLTELEVLVDPES 359

Query: 344 ----SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               S  +  G++ L  KI ++  + +  +   +  S+ RH+  L+     L+   +N  
Sbjct: 360 IVKTSILSKSGVDVLEKKIAALFFTGQTGERDATYVSNVRHIALLNDAEEALDEV-INGV 418

Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + G+  D+I  ++      LG+ITG    ++LL  +FS+FC+GK
Sbjct: 419 EAGMPVDLIQIDMTRCWDLLGEITGDSVQDELLTQLFSQFCLGK 462


>gi|302035744|ref|YP_003796066.1| tRNA modification GTPase [Candidatus Nitrospira defluvii]
 gi|300603808|emb|CBK40140.1| tRNA modification GTPase [Candidatus Nitrospira defluvii]
          Length = 476

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 142/402 (35%), Positives = 217/402 (53%), Gaps = 26/402 (6%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ L++V   P S+TGED  E   HGG  V++ +   L      RLA PGEF++RAF 
Sbjct: 80  VLDEALVVVMRGPHSYTGEDVVEVQCHGGPVVLDQLCRSLISA-GARLAEPGEFTKRAFL 138

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++ D I ++T     ++     GELS    +    L    + IEA LDF+
Sbjct: 139 NGRLDLAQAEAVLDTIRAKTARSLAIAQSQRRGELSREVEETRSGLVVALAHIEAALDFA 198

Query: 180 EEEDVQNFSSKEVLN--DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           EE D+      E+L   D   +K  +   +  G+ G I R G  + ILG  N GKSSL N
Sbjct: 199 EE-DIAFVRQDELLRLLDETLIK--LRGLVQSGEEGRIWREGAAVAILGRPNVGKSSLMN 255

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL + D AIVT IPGTTRD+L   +++ G  V++ DTAGIR TDD VE EGI+R+ L  E
Sbjct: 256 ALLRSDRAIVTPIPGTTRDLLEEVVNIHGIPVRLFDTAGIRTTDDPVETEGIRRSHLAWE 315

Query: 298 NADL---------------ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
           +ADL               +LLL+   + + +      D     +K DL           
Sbjct: 316 DADLALILLDSSQPMLESDLLLLRRSEAARALLVLNKCDLPSRISKEDLTRVCPVSAGLF 375

Query: 343 -ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398
            IS+    GL+ L + I S ++    +     + ++ RH     + ++ +E A  S++  
Sbjct: 376 EISAKMHIGLDGLRDAISSRLMPRGLESREGVLVTNLRHAAAFERALQGVEQARQSVDAG 435

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             G +++A +LR+A+ +LG+ITG +  +++L+ IF++FCIGK
Sbjct: 436 RAG-ELVAMDLRIAADALGEITGAITTDEILERIFAEFCIGK 476


>gi|71005678|ref|XP_757505.1| hypothetical protein UM01358.1 [Ustilago maydis 521]
 gi|46096628|gb|EAK81861.1| hypothetical protein UM01358.1 [Ustilago maydis 521]
          Length = 531

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 131/341 (38%), Positives = 196/341 (57%), Gaps = 40/341 (11%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPR-----KASLRYFFGLD 57
            +TIFA++TGA  + +++IR+SGP    V   +C+    +P+ R     K  LR      
Sbjct: 81  NDTIFALATGAGRAGVAMIRISGPLTSDVYLALCRTSHSQPYTRLPPSHKLVLRNLHHPH 140

Query: 58  G-RILDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-NLRLANPGEFS 114
              +LD G  I+ FP+  S+TGE+S E H+HGG+A ++G+L+ L      +R+A PGEF+
Sbjct: 141 TFELLDAGAGIIHFPAGSSYTGEESLELHIHGGLATISGVLDALVVFGGRMRIAEPGEFT 200

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAFENG++DL  AE+L  L+ +ET +QRR++++G SG  +  + +  + L    + +EA
Sbjct: 201 RRAFENGRLDLASAEALHGLVLAETAVQRRVALQGTSGLQTERFERIREVLLSAMAMVEA 260

Query: 175 DLDFSEEEDVQNFSSK------EVLNDILFLKNDISSHISQGK-------------LGEI 215
            +DFS+E  V+  + K      + L  +L  +  ISS  +                +GEI
Sbjct: 261 LIDFSDEGGVEEGTWKVARESVDALAVMLRTELGISSTGTDSNSDRDNKIKRQPRHIGEI 320

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +  G  + + G  NAGKSSL N LA ++ AIV+DIPGTTRDVL + LDL GY V + DTA
Sbjct: 321 LSTGIHLALYGPPNAGKSSLLNRLADRNAAIVSDIPGTTRDVLQVHLDLAGYKVIVYDTA 380

Query: 276 GIRETD-----------DIVEKEGIKRTFLEVENADLILLL 305
           G+R+             D +E+ GI+R    V NADL LL+
Sbjct: 381 GMRDESQLAHGSDQPSLDEIERIGIRRAKDAVSNADLALLV 421


>gi|251778655|ref|ZP_04821575.1| tRNA modification GTPase TrmE [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082970|gb|EES48860.1| tRNA modification GTPase TrmE [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 456

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 161/463 (34%), Positives = 263/463 (56%), Gaps = 33/463 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRY--FFGL 56
            E +TI  ++T      +SIIR+SG     +   I   K     K     ++RY     L
Sbjct: 2   REFDTICGIATPIGEGGVSIIRISGSKALDIISKIFVGKNNIDLKQMKTYTMRYGHIIEL 61

Query: 57  DGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           + + ++D+ ++     P S+T ED  E + HGG+   N ++ ++ K    R+A PGEF++
Sbjct: 62  ESKDVIDEVIISYMKGPHSYTTEDIIEINCHGGVISTNSVMNQVIK-AGARVAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I ++T++  + ++    G LS+   +    L +  + IE  
Sbjct: 121 RAFLNGRIDLSQAEAVIDIIKAKTDLSMKSALMQSGGALSTQIKEIRQYLLNTLALIEYG 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL-------GEIIRNGYKIVILGHS 228
           +DF+E+++  + +       +L +K+ I + I + K        G+IIR+G  +VI+G  
Sbjct: 181 VDFTEDDEDIDDTL------VLRVKDGIKTTILKVKELLKGADEGKIIRDGLNVVIIGKP 234

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           N GKSSL N L K+  AIVTDIPGTTRD++   L+++G  +KI+DTAGIRET+D VEK G
Sbjct: 235 NVGKSSLLNVLLKEKRAIVTDIPGTTRDIIEEYLNIDGIPIKITDTAGIRETEDTVEKIG 294

Query: 289 IKRTFLEVENADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDH 341
           ++R+  ++E ADLI+L+       E   K+ I+  K+ + I +  K+DL     + + D+
Sbjct: 295 VERSREKIEEADLIILILDSSRDLEEEDKEIINTIKDKNHIVLLNKTDLDRKIADIDLDN 354

Query: 342 L--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
              IS+ TG G+EEL NKIK +  +        I S+ RH   L +++   E+A L+  +
Sbjct: 355 QIKISAKTGYGIEELKNKIKELFFSGDINSESLIVSNVRHKQALYRSLENCEVA-LDRVN 413

Query: 400 CG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               LD+I+  +  A  +LG+ITG    E +L+ IFS+FC+GK
Sbjct: 414 ANEFLDLISIYVTSAMKALGEITGDELEEDVLNKIFSEFCVGK 456


>gi|331002965|ref|ZP_08326477.1| tRNA modification GTPase TrmE [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330413009|gb|EGG92384.1| tRNA modification GTPase TrmE [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 456

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 158/461 (34%), Positives = 247/461 (53%), Gaps = 35/461 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LDGRILD 62
           +TI A++T    S I IIR+SG     + + I   KK      S    +G    +  I+D
Sbjct: 5   DTIAAIATALGESGIGIIRISGEDAVSIADKIYNGKKTLREADSHTINYGHIFFEEEIID 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+++  +P +FTGED+ E + HGGI ++  IL  +      R+A PGEF++RAF NGK
Sbjct: 65  EVLVMLMKAPRTFTGEDTVEINCHGGILILEKILHAVI-ASGARMAFPGEFTKRAFLNGK 123

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ D+I ++ ++  +  +  +SG L+        K+    +FIEA LD  E  
Sbjct: 124 MDLSQAEAVIDIIEAKNDLALKAGIRQLSGALTENIKDIRAKILEQIAFIEAALDDPEHY 183

Query: 183 DVQNFSSK------EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
            +  +S K      +++  I +LK          K G II+ G   VI+G  NAGKSS+ 
Sbjct: 184 SLDGYSKKLRKIVNKLITRIEYLKKSF-------KDGSIIKEGINTVIIGKPNAGKSSIL 236

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L++ D AIVTDI GTTRD LT ++ L G  + I+DTAGIR+TDD+VE  G+++     
Sbjct: 237 NLLSRTDRAIVTDIAGTTRDTLTENIKLSGISLNITDTAGIRQTDDVVESIGVQKAIEAS 296

Query: 297 ENADLILLLKE---INSKKEISF---PKNIDFIFIGTKSDL--------YSTYTEEYDHL 342
            NADL L++ +      K++I      KN + I +  KSD            Y+ +   +
Sbjct: 297 NNADLNLVVIDGLMPLDKEDIELLESVKNKNAIILINKSDKELKIGVEDIKKYSSKDVII 356

Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            S+    G++EL N IKS  +SN+       I ++ RH   +++T+  LEM  ++  D G
Sbjct: 357 FSAKENIGVDELENMIKSKFISNEINFNDQVIITNIRHQEIINETLESLEMC-ISSIDEG 415

Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D    +L     +LG+I G    + +++ IFSKFC+GK
Sbjct: 416 YEEDFFTIDLLNGYEALGEIIGETVDDDVVNEIFSKFCMGK 456


>gi|330898612|gb|EGH30031.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 294

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/293 (39%), Positives = 175/293 (59%), Gaps = 3/293 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRMSGPLAGKAAEAIIGRILK-PRFAHYGPFVDDAGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++ + RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   +   VL  I  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLADGHVLKMIDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R  
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRAL 290


>gi|116493570|ref|YP_805305.1| tRNA modification GTPase TrmE [Pediococcus pentosaceus ATCC 25745]
 gi|122264966|sp|Q03D59|MNME_PEDPA RecName: Full=tRNA modification GTPase mnmE
 gi|116103720|gb|ABJ68863.1| tRNA modification GTPase trmE [Pediococcus pentosaceus ATCC 25745]
          Length = 464

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 255/460 (55%), Gaps = 25/460 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GR 59
           E +TI A+ST      ISIIR+SG    +    I + K      + ++ Y   +D   G 
Sbjct: 7   EFDTIAAISTPPGEGGISIIRISGVDALKTASQIYRGKDLNKVNSHTINYGHIIDPENGN 66

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ ++ V  +P ++T ED  E + HGGI   N IL+ +  + + RLA PGEF+ RAF 
Sbjct: 67  EVDEVMVSVMRAPHTYTKEDIVEINCHGGIVATNRILQIILGL-DARLAKPGEFTERAFL 125

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+   +++++ + G LS L       +  + + +E ++D+ 
Sbjct: 126 NGRIDLSQAEAVMDLIRAKTDQSMKVALDQLDGNLSHLITNLRQNILDVLAQVEVNIDYP 185

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +++ +    + +K  I   +S  K G+++R+G    I+GH N GKSS+ N L
Sbjct: 186 EYDDVETMTARLLKEKAIEVKAKIQQLLSTAKQGKVLRDGLATAIIGHPNVGKSSILNHL 245

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIVTD+ GTTRDV+   ++++G  +K+ DTAGI ET+D VEK G+ R+   +  A
Sbjct: 246 LHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETEDKVEKIGVDRSRKALSQA 305

Query: 300 DLILLLKEI-----NSKKEISFPKN-IDFIFIGTKSDL--------YSTYTEEYDHLISS 345
           DL++L+ +      +  +E+    N +  I +  KSDL           Y ++ + + SS
Sbjct: 306 DLVILVLDSSVPLRDEDRELLRETNHMQRIVVLNKSDLEVKINLNELQEYVDDKEIIKSS 365

Query: 346 FTGE-GLEELINKIKSI-LSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
                G ++L ++I ++  +   +    +I  ++ RH+  L Q    L+ A L   + G+
Sbjct: 366 AVSPLGTKDLEDRIAAMFFAGSIENTSNNIMVTNARHIGLLKQADTALD-AVLEGIETGM 424

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 425 PVDLVQIDMTRTWDLLGEITGDSYQDELLDQLFSQFCLGK 464


>gi|168362384|ref|ZP_02695563.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|171903373|gb|EDT49662.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
          Length = 438

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 144/446 (32%), Positives = 233/446 (52%), Gaps = 22/446 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILDK 63
           TI A++T  +  AI IIR+SGP  F++   I   K    +K + + ++     + ++LD+
Sbjct: 3   TIVALATAPMNCAIHIIRISGPQAFEMINKISTTK---IKKETFKIWYTTLKDNDQVLDE 59

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L+  F  P++FTGED  E + HGG+ V N I++ L K    + A  GEFSRRA  N K+
Sbjct: 60  VLVNTFVGPKTFTGEDLVEINCHGGVIVANLIIKILIKY-GCQPAQRGEFSRRALLNKKM 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH----IRSFIEADLDFS 179
           DL + E++ +L++++ E    LS++G+ G L     Q I    H    I   IE ++D+ 
Sbjct: 119 DLSKIEAINNLVNAKNE----LSVKGVIGALLGRVSQSISDFKHELFMIIGQIEVNIDYP 174

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+   +  +   +L L   I   I Q K    I  G K++I+G  N GKS+L NAL
Sbjct: 175 EYDDVEQVDAINLKQRLLVLNEKIKKIIDQSKKFLPINKGIKVLIIGKPNVGKSTLLNAL 234

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +  AIVTDIPGTTRDV+   ++++   + I DTAGI  T+D VE  GI +    +   
Sbjct: 235 CNEQKAIVTDIPGTTRDVIESSINIDNITLNILDTAGIHSTNDFVENLGINKAKELINKV 294

Query: 300 DLILLLKEINSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           DL+L L   N+++++      K+   + + TK DL   Y +  D +  +     ++ LI+
Sbjct: 295 DLVLYLVPANNQQDLELYDLIKDQKHLLVYTKKDLIDQYND--DQIYINAKDNDIQALID 352

Query: 357 KIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASV 414
           KIK +    +F      +   +R +  L      ++ A  N EK   +D++  +L   ++
Sbjct: 353 KIKELFYVQEFDNANIDVLQSQRQIGILENVNYLIDNAITNLEKGDTVDLVVADLEFCNL 412

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            L ++ G       LD +F  FC+GK
Sbjct: 413 RLNELLGIGSEYDFLDDLFKNFCVGK 438


>gi|213389877|gb|ACJ46004.1| tRNA modification GTPase [Palm lethal yellowing phytoplasma]
          Length = 460

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 157/458 (34%), Positives = 250/458 (54%), Gaps = 23/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQ-------VCEFICKKKKPFPRKASLRYFFGLD 57
           ++TI A+ST     +ISIIR+SGP   +             K         ++   F LD
Sbjct: 4   EDTIAAISTPLGTGSISIIRISGPEAIEKIGKIFKFKNSKKKNNLLKELSHTIHNGFILD 63

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G ILD  L+ +F  P SFTGED+ E + HGGI +   +LE +  +  +R+A PGEFS+
Sbjct: 64  DKGEILDDVLISIFRKPNSFTGEDTIEINAHGGILITQLLLERVLSL-GIRMACPGEFSK 122

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N KIDL +AES+ DLI ++ E   +L+  G+      L  +    +  +   IE +
Sbjct: 123 RAFLNNKIDLTQAESIMDLIHAQNEKALKLAQFGLQKNTFKLVSELQQDILTLLGEIEVN 182

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D+ N +++ +L     L + I + ++       I+NG K +I+G  N GKSSL
Sbjct: 183 IDYPEYDDIPNITNQNILFRTKILIDKIQNILNCSIKNTFIKNGIKTLIIGKPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  ++ +IV+DI GTTRD ++ ++++ G  + + DTAGIRET D +EK GI++    
Sbjct: 243 LNVLLNEERSIVSDIAGTTRDFVSENININGINLNLIDTAGIRETQDDLEKIGIQKAKKI 302

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           +++A+L+LL+ + ++  E      +   +N   I IG+KSDL +       +E    IS+
Sbjct: 303 LKDAELVLLILDQSNVLEREDEFLLKLTENHFRILIGSKSDLPNKLNISSLKENVIFISN 362

Query: 346 FTGEGLEELI-NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402
            T +G+  L  N +K    NK K   F+  S+ RH+  L   +  L M   ++ ++   +
Sbjct: 363 ITKKGINSLKENILKMFKLNKVKSKDFNYFSNARHIKQLKIALNSLIMMKKTITKQLMPI 422

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           DI    L+ A  SLG+I G    E L++ +FSKFC+GK
Sbjct: 423 DIYTIYLKEAYESLGEILGSNVKESLINELFSKFCLGK 460


>gi|309804055|ref|ZP_07698136.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 11V1-d]
 gi|308163823|gb|EFO66089.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 11V1-d]
          Length = 461

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 261/465 (56%), Gaps = 42/465 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTEKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176
           G+IDL +AES+ D+I ++T+  R+++M+ + G    E+  L  + ++ + H     E ++
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL 
Sbjct: 183 DYPEY-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L+K++ AIVT+I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEE-----YDHLI 343
             +DL+LLL  INS +E++          ++   I I  K+D  +  T++      D  I
Sbjct: 302 TESDLVLLL--INSSEELTEEDQKLLELTQDKKRIVILNKADQVAKITKKDIQKITDSPI 359

Query: 344 SSFT------GEGLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
            + +        GLEE I  +  + I  +K + +  +    +  L   ++      + ++
Sbjct: 360 VTISVLKKQNMTGLEEAIKSLFLQGIADSKSEVMVTN--QRQNDLLRKAKQSLIEAIEAI 417

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           N+ +  LD++  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 418 ND-NMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461


>gi|134301153|ref|YP_001114649.1| tRNA modification GTPase TrmE [Desulfotomaculum reducens MI-1]
 gi|189036201|sp|A4J9S1|MNME_DESRM RecName: Full=tRNA modification GTPase mnmE
 gi|134053853|gb|ABO51824.1| tRNA modification GTPase trmE [Desulfotomaculum reducens MI-1]
          Length = 461

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 150/460 (32%), Positives = 249/460 (54%), Gaps = 27/460 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL-----DG 58
           +TI A++T     +I +IR+SGP    + + + + K  K + +K + +  +G       G
Sbjct: 4   DTIVAIATALGEGSIGVIRMSGPDAITIGKKVFRPKYNKEWYQKDNYKIIYGHVINPETG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ LL +   P+SFT ED  E   HGGI  +  +LE + +    R A PGEFS+R+F
Sbjct: 64  EIIDEVLLSIMRGPKSFTAEDVIEISCHGGIIPLRKVLEVILR-NGARHAEPGEFSKRSF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AES+ D+I ++T+   ++++  + G+LS        K+  + + IEA +DF
Sbjct: 123 LNGRLDLAQAESIIDIIRAKTDAGAKIAVNQLGGKLSEKVNGLQHKVLGLLAKIEAIIDF 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E+ D+   +   +  +   L  +I   ++    G+I R G K VI+G  N GKSSL NA
Sbjct: 183 PED-DIPEENLLGISKECNSLIKEIEHLLAYADTGKIYREGLKTVIVGKPNVGKSSLLNA 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVTDIPGTTRDV+   L ++G  +KI DTAG+RET D+VEK G++++   +  
Sbjct: 242 LLHEQRAIVTDIPGTTRDVIEEILSIKGVPLKIIDTAGLRETQDLVEKIGVEKSRELLNQ 301

Query: 299 ADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---------- 342
           AD++L + +  +      +K I   K+   + +  K D+     + ++            
Sbjct: 302 ADIVLFVLDATTGISDEDRKVIDLIKDKKVLILINKIDITKNKIDSHEIRQLINFSEIIE 361

Query: 343 ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400
           IS+    GL++L   I   ++  K         S+ RH + L + +++L  AS   ++  
Sbjct: 362 ISAQKEIGLDKLEETIFNMVVEGKITTTDSIFVSNSRHKHALERAMQHLLEASKGLQEYV 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D+++ +L+ +   LG+ITG    E L+D IFS FCIGK
Sbjct: 422 PADLVSIDLKSSWEILGEITGNSVTEDLIDRIFSDFCIGK 461


>gi|187932414|ref|YP_001887734.1| tRNA modification GTPase TrmE [Clostridium botulinum B str. Eklund
           17B]
 gi|187720567|gb|ACD21788.1| tRNA modification GTPase TrmE [Clostridium botulinum B str. Eklund
           17B]
          Length = 456

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 160/465 (34%), Positives = 265/465 (56%), Gaps = 37/465 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRY--FFGL 56
            E +TI  ++T      +SIIR+SG     +   I   K     K     ++RY     L
Sbjct: 2   REFDTICGIATPIGEGGVSIIRISGSKALDIISKIFVGKNNIDLKQMKTYTMRYGHIIEL 61

Query: 57  DGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           + + ++D+ ++     P S+T ED  E + HGG+   N ++ ++ K   +R+A PGEF++
Sbjct: 62  ESKDVIDEVIISYMKGPHSYTTEDIIEINCHGGVISTNSVMNQVIK-AGVRVAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I ++T++  + ++    G LS    +    L +  + IE  
Sbjct: 121 RAFLNGRIDLSQAEAVIDIIKAKTDLSMKSALMQSGGALSKQIKEIRQYLLNTLALIEYG 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL-------GEIIRNGYKIVILGHS 228
           +DF+E+++  + +       +L +K+ I + I + K        G+IIR+G  +VI+G  
Sbjct: 181 VDFTEDDEDIDDTL------VLRVKDGIKTTILKVKELLKGADEGKIIRDGLNVVIIGKP 234

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           N GKSSL N L K+  AIVTD+PGTTRD++   L+++G  +KI+DTAGIRET+D VEK G
Sbjct: 235 NVGKSSLLNVLLKEKRAIVTDVPGTTRDIIEEYLNIDGIPIKITDTAGIRETEDTVEKIG 294

Query: 289 IKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTE-EY 339
           ++R+  ++E ADLI+L+  ++S +E        I+  K+ + I +  K+DL     + + 
Sbjct: 295 VERSREKIEEADLIILI--LDSSRELEEEDKEIINTIKDKNHIVLLNKTDLDRRIADIDL 352

Query: 340 DHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SL 395
           D+   IS+ TG G+EEL NKIK +  +        I S+ RH   L +++   E+A   +
Sbjct: 353 DNQINISAKTGYGIEELKNKIKELFFSGDINSESLIVSNVRHKQALYRSLENCEIALDRV 412

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           N  +  LD+I+  +  A  +LG+ITG    E +L+ IFS+FC+GK
Sbjct: 413 NANEF-LDLISIYVTSAMKALGEITGDELEEDVLNKIFSEFCVGK 456


>gi|118582021|ref|YP_903271.1| tRNA modification GTPase TrmE [Pelobacter propionicus DSM 2379]
 gi|205415790|sp|A1AV43|MNME_PELPD RecName: Full=tRNA modification GTPase mnmE
 gi|118504731|gb|ABL01214.1| tRNA modification GTPase trmE [Pelobacter propionicus DSM 2379]
          Length = 456

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 146/417 (35%), Positives = 227/417 (54%), Gaps = 32/417 (7%)

Query: 49  SLRYFFGL-----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP 103
           S R+++G       G ++D+ + ++  +P S+T ED  E H HGG+ VV  IL  L    
Sbjct: 47  SHRFYYGTLIDIQTGAVVDEVMAVIMRAPHSYTREDVLELHCHGGMLVVERILS-LVLRA 105

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
             RLA PGEF+RRAF NG+IDL++AES+ D+IS++T+    L+     G LSS   +   
Sbjct: 106 GARLAEPGEFTRRAFLNGRIDLVQAESVMDIISAQTDAALALAQRQRGGVLSSRIAEARQ 165

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
            L H  + IEA +DF E+ D+     + + + +   +  I   +     G ++R G  ++
Sbjct: 166 LLLHALALIEAYIDFPED-DLGETDVESIRSSVEGARTHIRRLLEDFNEGRLLREGISVL 224

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  NAGKSSL N L  ++ AIVT +PGTTRD++   ++L G  V++ DTAGIR T+D+
Sbjct: 225 IIGKPNAGKSSLLNRLLNENRAIVTHLPGTTRDIIEETINLGGLAVRLLDTAGIRHTEDV 284

Query: 284 VEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYST--Y 335
           +E+EGI R   ++  ADLIL + +         +  +   +   F+   +K+DL      
Sbjct: 285 IEQEGINRALEKIPQADLILFVLDGSRPFGPEDRLILDALQGNRFVAAISKADLPRVLEL 344

Query: 336 TEEYDHL----ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRY 389
             E  +L     S+ +GEG+++L + ++S+   S       +   S  RH   LS     
Sbjct: 345 PSECCNLPQVSFSAESGEGVDDLKSTVRSLFVSSQAIDNREYVAISRVRHRDALSSA--- 401

Query: 390 LEMASLNEKDCGLD------IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               SL+    GLD      ++A +LR A  S+G++TG V  E +LD+IFS FCIGK
Sbjct: 402 --DGSLSRFRQGLDSGASLDLLALDLREALASVGEVTGQVTNEDVLDLIFSSFCIGK 456


>gi|199598240|ref|ZP_03211661.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus HN001]
 gi|199590843|gb|EDY98928.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus HN001]
          Length = 462

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 146/457 (31%), Positives = 246/457 (53%), Gaps = 25/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GRIL 61
           +TI A+ST     AISI+RLSG +       + K K     K+ ++ Y   +D   G ++
Sbjct: 9   DTIAAISTPPGEGAISIVRLSGETAVATANKVFKGKNLTQVKSHTIHYGHIVDPETGDLI 68

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ ++ V  +P++FT ED  E + HGGI   N IL+ L      R+A PGEF++RAF NG
Sbjct: 69  DEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLG-EGARMAEPGEFTKRAFLNG 127

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL EAES+ DLI ++T+   ++++  + G L  L  Q   ++  + + +E ++D+ E 
Sbjct: 128 RIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHHLIKQLRQEILEVLAQVEVNIDYPEY 187

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D    ++K +L     +K  I   ++    G+++R G    I+G  N GKSSL N +  
Sbjct: 188 -DTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRPNVGKSSLLNHMLH 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVTD+ GTTRDVL   +++ G  +K+ DTAGI +T D VEK G++R+   +  ADL
Sbjct: 247 EDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVERSRQAITQADL 306

Query: 302 ILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLISSF-- 346
           ILL+ +         K+ ++   +   I +  K DL +           + D +I +   
Sbjct: 307 ILLVLDQSEPLTTEDKQLLAATADKKRIIVLNKQDLPARLDTTALLQLVDADEIIKTAIP 366

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLE--MASLNEKDCGLD 403
           T +G++ L  +I  +     +    ++  S+ R +  L Q  + L+  MA ++     +D
Sbjct: 367 TSDGMDALDERIAKLFFGGIENSQGTVMVSNARQIGLLRQASKSLDAVMAGIH-AGMPID 425

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++  A   LG+ITG    ++L+  +FS+FC+GK
Sbjct: 426 LVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462


>gi|270293804|ref|ZP_06200006.1| tRNA modification GTPase TrmE [Bacteroides sp. D20]
 gi|270275271|gb|EFA21131.1| tRNA modification GTPase TrmE [Bacteroides sp. D20]
          Length = 464

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 156/467 (33%), Positives = 246/467 (52%), Gaps = 36/467 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL---DG 58
           ++TI A++T A   AI  IR+SGP   ++   I    +K K           FG    + 
Sbjct: 3   QDTICAIAT-AQGGAIGCIRVSGPDAIEITSRIFTPARKGKKLKDAKPYTLTFGHIHEEE 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ L+ +F +P S+TGEDS E   HG   ++  +L+ L      RLA PGE+++RAF
Sbjct: 62  NIIDEVLVSLFRAPHSYTGEDSTEIMCHGSSYILQKVLQLLIG-NGCRLAAPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
             GK+DL +AE++ADLI+S +    RL+M  M G  S       D+L H  S IE +LDF
Sbjct: 121 LGGKMDLSQAEAVADLIASTSAATHRLAMSQMRGGFSKELASLRDQLLHFTSLIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+ E+++     E+      ++  IS  +    +G  I+NG  + I+G +NAGKS+L NA
Sbjct: 181 SDHEELEFADRSELCLLADGIEQVISRLVQSFSVGNAIKNGVPVAIIGETNAGKSTLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIV+DI GTTRDV+   ++L G   +  DTAGIRET+D +E  GI+RTF ++E 
Sbjct: 241 LLNEERAIVSDIHGTTRDVIEDTVNLGGITFRFIDTAGIRETNDTIENLGIERTFQKLEQ 300

Query: 299 ADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLY--------STYTEEYDH 341
           A+++L ++   N+  +I        P+      I +  K+DL         S++T    +
Sbjct: 301 AEIVLWIVDATNAVSQIPQLTTQILPRCEGKRLILVFNKTDLVQDASTIPNSSFTVAATN 360

Query: 342 LIS-SFTGEGLEELINKIKSILSNKFKKLPF-----SIPSHKRHLYHLSQTVRYLE--MA 393
           +   S + +G   L +K++ +L +    LP       I ++ RH   L+  +  +     
Sbjct: 361 VQCISISAKGRTNL-DKLQQMLISA-ANLPTVTQNDVIVTNIRHYEALTHALEAIHRVQQ 418

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L E   G D +++++R     L  I G V  + +L  IF  FCIGK
Sbjct: 419 GLAENLSG-DFVSQDIRECIFHLSDIAGEVTNDMVLGNIFEHFCIGK 464


>gi|254445762|ref|ZP_05059238.1| tRNA modification GTPase TrmE [Verrucomicrobiae bacterium DG1235]
 gi|198260070|gb|EDY84378.1| tRNA modification GTPase TrmE [Verrucomicrobiae bacterium DG1235]
          Length = 452

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 148/451 (32%), Positives = 242/451 (53%), Gaps = 19/451 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +T+ A++T A  SAI++IR++G  C Q+  +     K+P PR AS   +      +LD  
Sbjct: 5   DTVAALATPAGESAIAMIRVTGGLCEQIANDAFGLAKRPAPRHASHGSYRSASKEVLDDV 64

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +   F  P+S+TGED  E   HG   +   +LE+L +    R + PGEF+RRAF NG++D
Sbjct: 65  VYTFFSGPKSYTGEDVLEICCHGNPLIATRVLEDLLER-GCRQSEPGEFTRRAFLNGRMD 123

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ +LI + ++   R++   + G       Q   +L    + +EA +DF +E D+
Sbjct: 124 LTQAEAVMELIQARSDRGIRVANNQLRGHFGKQLEQLKQRLLATVATVEAYIDFPDE-DL 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                +  +  I  +    S  I  GK    +R+G K +ILG  NAGKSSL N L   + 
Sbjct: 183 PPERKEAEIEAIRAVLTFCSRIIDSGKYAAFLRDGVKTLILGEPNAGKSSLMNCLLGFER 242

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV++ PGTTRD +   + ++G+ +++ DTAG+RE +  +E++GI++T    E ADL LL
Sbjct: 243 AIVSEEPGTTRDFIRERVIVDGHCLQLMDTAGLREAESGIERQGIQKTVELSEEADLFLL 302

Query: 305 LKEINSKKEISFPKNI-------DFIFIGTKSDLYSTY--TEEYDHL----ISSFTGEGL 351
           + +  +    + P ++       + I +  KSDL   +  +E+   L    +++ +GEGL
Sbjct: 303 VLD-GTLPSPALPDSVAKRITAKNCIVVRNKSDLGERHPLSEQLCGLEQLSMAAISGEGL 361

Query: 352 EELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENL 409
            EL  +I K I ++        I  + RH   L +    L  A  N E     + +A  L
Sbjct: 362 LELRERIVKMIDAHLAHDRDDLILVNARHSAALKELAECLASAIRNFEAGEPAEFVASEL 421

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R A  ++G++ G +D E +LD++FS FCIGK
Sbjct: 422 RGAIEAIGRVLGRIDNEDVLDVLFSSFCIGK 452


>gi|225028844|ref|ZP_03718036.1| hypothetical protein EUBHAL_03131 [Eubacterium hallii DSM 3353]
 gi|224953840|gb|EEG35049.1| hypothetical protein EUBHAL_03131 [Eubacterium hallii DSM 3353]
          Length = 471

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 165/473 (34%), Positives = 253/473 (53%), Gaps = 41/473 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL------RYFF 54
           M +E +TI A++T    + I IIR+SG    +  E + K  +P+ +KA +      R ++
Sbjct: 7   MINEFDTIAAIATAVSNAGIGIIRISGS---EAMEILVKIFEPYNKKADVYQLENHRIYY 63

Query: 55  G--LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
           G   DG  ++D+ ++++   P S+T ED  E   HGG+ VV  +L  + K    R A PG
Sbjct: 64  GNIKDGEEVVDECIVLIMKGPHSYTKEDVVEIDCHGGVTVVYKVLNLVLK-NGARAAEPG 122

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF++RAF NG+IDL +AE++ DLI S+ EM R+ SM  + G LS    Q  +++ +  +F
Sbjct: 123 EFTKRAFLNGRIDLSQAEAVMDLIDSKNEMARKNSMTQLKGGLSDKIKQLREEIIYQIAF 182

Query: 172 IEADLDFSEEEDVQNFSSKEVLND---ILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           IE+ LD  E   +  F  K +  D   I   K  + S+ +    G II  G +  I+G  
Sbjct: 183 IESALDDPEHYSLDGFPEKLLEEDKKWITIAKEMLDSYDN----GRIIAEGIRTCIVGKP 238

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           NAGKSS  NAL  ++ AIVTDI GTTRD L   + ++G  + I DTAGIR+T+D VE  G
Sbjct: 239 NAGKSSFLNALLGEERAIVTDIAGTTRDTLEESVTIDGITLNIVDTAGIRDTEDKVESIG 298

Query: 289 IKRTFLEVENADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSD------------ 330
           ++R   E+E+ADLIL L + +   S+++I   + I     I +  KSD            
Sbjct: 299 VERAKKEIESADLILFLMDTSVQISEEDIEILQRIRDKKKIILLNKSDKATEESGFEQSA 358

Query: 331 LYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQTVR 388
           L    +EE   + IS+  G+G++  I ++K+++ +    +   +  ++ RH   L++T  
Sbjct: 359 LKEYISEETPVISISAKYGDGIDNFIMELKNMMFHGRIDVNQEVYITNARHKDALAKTYE 418

Query: 389 YLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LE    + E     D    +L  A   LG I G    E L++ IFSKFC GK
Sbjct: 419 SLECVERSIEAGMPEDFFTIDLMNAYEKLGLIIGESVEEDLVNEIFSKFCTGK 471


>gi|258509933|ref|YP_003172684.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus GG]
 gi|257149860|emb|CAR88833.1| tRNA modification GTPase MnmE [Lactobacillus rhamnosus GG]
 gi|259651193|dbj|BAI43355.1| tRNA modification GTPase [Lactobacillus rhamnosus GG]
          Length = 462

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 146/457 (31%), Positives = 246/457 (53%), Gaps = 25/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GRIL 61
           +TI A+ST     AISI+RLSG +       + K K     K+ ++ Y   +D   G ++
Sbjct: 9   DTIAAISTPPGEGAISIVRLSGETAVATANKVFKGKDLTQVKSHTIHYGHIVDPETGDLI 68

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ ++ V  +P++FT ED  E + HGGI   N IL+ L      R+A PGEF++RAF NG
Sbjct: 69  DEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLG-EGARMAEPGEFTKRAFLNG 127

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL EAES+ DLI ++T+   ++++  + G L  L  Q   ++  + + +E ++D+ E 
Sbjct: 128 RIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHHLIKQLRQEILEVLAQVEVNIDYPEY 187

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D    ++K +L     +K  I   ++    G+++R G    I+G  N GKSSL N +  
Sbjct: 188 -DTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRPNVGKSSLLNHMLH 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVTD+ GTTRDVL   +++ G  +K+ DTAGI +T D VEK G++R+   +  ADL
Sbjct: 247 EDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVERSRQAITQADL 306

Query: 302 ILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLISSF-- 346
           ILL+ +         K+ ++   +   I +  K DL +           + D +I +   
Sbjct: 307 ILLVLDQSEPLTTEDKQLLAATADKKRIIVLNKQDLPARLDTAALLQLVDADEIIKTAIP 366

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLE--MASLNEKDCGLD 403
           T +G++ L  +I  +     +    ++  S+ R +  L Q  + L+  MA ++     +D
Sbjct: 367 TSDGMDALDERIAKLFFGGIENSQGTVMVSNARQIGLLRQASKSLDAVMAGIH-AGMPID 425

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++  A   LG+ITG    ++L+  +FS+FC+GK
Sbjct: 426 LVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462


>gi|312871302|ref|ZP_07731400.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 3008A-a]
 gi|312874855|ref|ZP_07734874.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2053A-b]
 gi|311089600|gb|EFQ48025.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2053A-b]
 gi|311093316|gb|EFQ51662.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 3008A-a]
          Length = 461

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 261/465 (56%), Gaps = 42/465 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176
           G+IDL +AES+ D+I ++T+  R+++M+ + G    E+  L  + ++ + H     E ++
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL 
Sbjct: 183 DYPEY-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L+K++ AIVT+I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEE-----YDHLI 343
             +DL+LLL  INS +E++          ++   I I  K+D  +  T++      D  I
Sbjct: 302 TESDLVLLL--INSSEELTEEDQKLLELTQDKKRIIILNKADQVAKITKKDIQKITDSPI 359

Query: 344 SSFT------GEGLEELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
            + +        GLEE I    ++ I  +K + +  +    +  L   ++      + ++
Sbjct: 360 VTISVLKKKNMIGLEEAIKSLFLQGITDSKSEVMVTN--QRQNDLLRKAKQSLIEAIEAI 417

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           N+ +  LD++  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 418 ND-NMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461


>gi|297842581|ref|XP_002889172.1| hypothetical protein ARALYDRAFT_895691 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335013|gb|EFH65431.1| hypothetical protein ARALYDRAFT_895691 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 560

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 157/473 (33%), Positives = 243/473 (51%), Gaps = 44/473 (9%)

Query: 7   TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKKKKPF-----------PRKASLRYF 53
           TI A+ T  G  P A+ I+RLSGP   +V   + +  K             P+   + Y 
Sbjct: 93  TIVAIVTPIGGPPGAVGIVRLSGPKAVEVARRVFRSAKKRKKKDSDSDSWQPKSHFVEYG 152

Query: 54  FGLD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
             +D  G ++D+ L +   +P S+T ED  E   HG    +  +L    +    RLA PG
Sbjct: 153 VVVDSHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCVEA-GARLAEPG 211

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+ RAF NG++DL +AE++  LIS+++      ++EG+ G  SSL      +   + + 
Sbjct: 212 EFTLRAFLNGRLDLSQAENVEKLISAKSSAAADAALEGIQGGFSSLVKSLRAQCIELLTE 271

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           IEA LDF  E+++     + V+N I  +  D+ S +      +++++G +I I+G  N G
Sbjct: 272 IEARLDF--EDEMTPLDIESVINKINSMSEDVESALDTANYDKLLQSGLQIAIVGRPNVG 329

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NA +K + AIVT++ GTTRDV+  ++ + G  + + DTAGIRET+DIVEK G++R
Sbjct: 330 KSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITVLDTAGIRETNDIVEKIGVER 389

Query: 292 TFLEVENADLIL---------------LLKEINSKKEISFPKN-IDFIFIGTKSDLYSTY 335
           +    + AD+I+               LL++I S K +    N ID     +   L    
Sbjct: 390 SETAAKVADVIIMAVSAVEGWTEEDTELLRKIQSDKPMILVMNKIDSAPPSSCDQLEDQR 449

Query: 336 -TEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
             EE  H     S+ TG+GLEEL + I  IL     ++P        +     Q VR  E
Sbjct: 450 KKEEVFHKSVFTSAVTGQGLEELEDAILEILG--LDRVPTGGHQWTVNQRQCEQLVRTKE 507

Query: 392 -MASLNEK---DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +A L E    +  +D     LR A+++L +I+G    E++L  IF+KFCIGK
Sbjct: 508 ALARLREAIEDEIPIDFWTIELREAALALAQISGQDVSEEVLSSIFAKFCIGK 560


>gi|305666624|ref|YP_003862911.1| tRNA modification GTPase [Maribacter sp. HTCC2170]
 gi|88708895|gb|EAR01130.1| tRNA modification GTPase [Maribacter sp. HTCC2170]
          Length = 470

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 157/469 (33%), Positives = 244/469 (52%), Gaps = 37/469 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDGRIL 61
           +TI A++T A   AI++IRLSG     +    F     K   ++ S     G  +DG +L
Sbjct: 5   DTIVALATPAGSGAIAVIRLSGKDAKSIAGSYFRSIHGKDLSKQKSHTIHLGHIIDGDVL 64

Query: 62  -DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
            D+ LL +F  P S+TGED  E   HG   +   I++   +    R+A  GEF+ RAF N
Sbjct: 65  MDEVLLSIFNGPNSYTGEDVIEISCHGSPYIQQQIIQLFLR-NGCRMAEAGEFTLRAFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI+SE E   +++++ M G  S+      D+L +  S IE +LDF+E
Sbjct: 124 GKLDLSQAEAVADLIASENETTHQIAIQQMRGGFSNEIKLLRDELMNFASLIELELDFAE 183

Query: 181 EEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E DV+ F+ +    D IL ++N +   I    +G +I+ G  + I+G  N GKS+L NAL
Sbjct: 184 E-DVE-FADRLKFQDLILRIQNVLKKLIDSFAVGNVIKKGIPVAIVGEPNVGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DI GTTRD +  ++ + G   +  DTAGIR+T DIVE  GIK+TF ++E +
Sbjct: 242 LNEEKAIVSDIAGTTRDAIEDEIAIGGIGFRFIDTAGIRDTKDIVENIGIKKTFEKIEQS 301

Query: 300 DLILLLKEIN--SKKEISFPK-------------NIDFIFIGTKSD------------LY 332
            ++L L         EIS                N   + I  K D            L 
Sbjct: 302 QVVLFLHSAEEFQNAEISLTSLQNEVGKISTKHPNKPLVIIVNKIDILNNKERQQLETLL 361

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
           S        LIS+ TGE +E++ N + + ++    +   +I ++ RH   L + +  ++ 
Sbjct: 362 SNIEGTTYKLISAKTGESVEDVKNMLLNFVNTGALRNNETIVTNTRHYDALLKALEEIQK 421

Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                +     D++A ++R A    G+ITG +  + LL  IF+ FCIGK
Sbjct: 422 VQHGMDNHLSGDLLAIDIRQALHHFGEITGEITSDDLLGNIFANFCIGK 470


>gi|259500781|ref|ZP_05743683.1| tRNA modification GTPase TrmE [Lactobacillus iners DSM 13335]
 gi|302190768|ref|ZP_07267022.1| tRNA modification GTPase TrmE [Lactobacillus iners AB-1]
 gi|309805912|ref|ZP_07699944.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 03V1-b]
 gi|315654126|ref|ZP_07907042.1| tRNA modification GTPase TrmE [Lactobacillus iners ATCC 55195]
 gi|325913694|ref|ZP_08176056.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 60-B]
 gi|259167475|gb|EEW51970.1| tRNA modification GTPase TrmE [Lactobacillus iners DSM 13335]
 gi|308167688|gb|EFO69835.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 03V1-b]
 gi|315488822|gb|EFU78468.1| tRNA modification GTPase TrmE [Lactobacillus iners ATCC 55195]
 gi|325477053|gb|EGC80203.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 60-B]
          Length = 461

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 260/465 (55%), Gaps = 42/465 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176
           G+IDL +AES+ D+I ++T+  R+++M+ + G    E+  L  + ++ + H     E ++
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL 
Sbjct: 183 DYPEY-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L+K++ AIVT+I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDH------- 341
             +DL+LLL  INS +E++          ++   I I  K+D  +  T++          
Sbjct: 302 TESDLVLLL--INSSEELTEEDQKLLELTQDKKRIVILNKADQVAKITKKDIQKITDSPI 359

Query: 342 -LISSFTGE---GLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
             IS    +   GLEE I  +  + I  +K + +  +    +  L   ++      + ++
Sbjct: 360 VTISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMVTN--QRQNDLLRKAKQSLIEAIEAI 417

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           N+ +  LD++  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 418 ND-NMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461


>gi|313885592|ref|ZP_07819342.1| tRNA modification GTPase TrmE [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619322|gb|EFR30761.1| tRNA modification GTPase TrmE [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 459

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 147/469 (31%), Positives = 244/469 (52%), Gaps = 42/469 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---G 58
           +E++TI A+ST     AI I+R+SG     +   + K      + + ++ Y   +D    
Sbjct: 2   YERDTIAAISTALGEGAIGIVRMSGGDALVMANQLFKGVNLLTQPSHTIHYGHIVDPESK 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +I+D+ ++ +  +P+++T ED  E + HGGI  V  IL+   +M   RLA PGEF++RAF
Sbjct: 62  QIIDEVMVTLLRAPKTYTREDVVEINCHGGIMAVQAILDLCLQM-GARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T    + SM  + G LS         + +  + IE  +D+
Sbjct: 121 LNGRIDLSQAEAVMDLIEAKTNKAMQASMNQLQGSLSKKIRSLRQTMLNTLAQIEVTIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  S +++      +  ++   + Q + G + R G   VI+G  N GKSSL N 
Sbjct: 181 PEYDDVEEMSLQQLKTTAQAISQEVQHILKQAQSGRLFREGINTVIVGRPNVGKSSLLNR 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L   D AIVTDI GTTRD +   +++ G  +K+ DTAGIR+T+++VEK G++R+   +E 
Sbjct: 241 LTGWDKAIVTDIEGTTRDTIEEMVNVRGVPLKLIDTAGIRQTEEVVEKIGVERSRKALEE 300

Query: 299 ADLIL---------------LLKEINSKKEI------SFPKNIDFIFI----GTKSDLYS 333
           ADL++               LLK    KK I        P  +D   +    GT + + +
Sbjct: 301 ADLVILILNQAEDLQEVDLELLKASQGKKRIILLNKQDLPSQLDRNALAESSGTATIIET 360

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-E 391
           +  EE           GL+ L ++I ++    + +    +   + RH   L Q +  L E
Sbjct: 361 SMLEEA----------GLDALEDEISNLFFKGQLQSTDINYLLNSRHTQLLKQALAALDE 410

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + S    +  +D+I  +   A   LG+ITG    ++LL+ +FS+FC+GK
Sbjct: 411 VQSAVAMELPVDLIQIDYTRAWDLLGEITGDSVQDELLNELFSQFCLGK 459


>gi|62185497|ref|YP_220282.1| tRNA modification GTPase TrmE [Chlamydophila abortus S26/3]
 gi|81312355|sp|Q5L4W0|MNME_CHLAB RecName: Full=tRNA modification GTPase mnmE
 gi|62148564|emb|CAH64336.1| probable tRNA modification GTPase TrmE [Chlamydophila abortus
           S26/3]
          Length = 443

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 153/449 (34%), Positives = 232/449 (51%), Gaps = 20/449 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FPRKASLRYFFGLDGRILD 62
           + +TI A++T     +I+I+R+SGP   Q+ + I     P F    +       +G+ +D
Sbjct: 3   KNDTIAAIATPPGEGSIAIVRISGPEAIQITDKIFSGSVPSFSSHTAHLGTVSYNGQQID 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LL++  +P SFTGED  E   HGG    + IL  L      R A PGEFS+RAF NGK
Sbjct: 63  QTLLLIMRAPRSFTGEDVVELQCHGGYFSCSQILAALIAE-GARPALPGEFSQRAFLNGK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AE++ ++I+++      ++     G  S    Q    +    +FIE   DF EEE
Sbjct: 122 IDLIQAEAIQNIIAADNLDAFHIAQNHFQGHFSKKVQQISSLIIESLAFIEVLADFPEEE 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                     L++ + + +D+ +   QG+    +  G  IV+ GH NAGKSSL NAL  K
Sbjct: 182 QPDMQEPMNRLHEAILIIDDLIASFDQGQR---LAQGTSIVLAGHPNAGKSSLLNALTNK 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDIPGTTRD+L  +  L+G  +++ D+AG RET + +E+EGI+R    +E ++ I
Sbjct: 239 NRAIVTDIPGTTRDILEENWMLQGKRIRLIDSAGQRETHNPIEQEGIERAIAAMEASEAI 298

Query: 303 LLLKEINSKKEISFPKNI---DFIFIGTKSDLYSTY---TEEYDHLISSFTGEGLEELIN 356
           L + +  S+     P+ +     + +  KSDL +     T      +S+ TG G+ EL  
Sbjct: 299 LWVMDA-SQPPPPLPEILMRKPSLLLWNKSDLATPPHLETTLPQLAVSAKTGAGMIELKQ 357

Query: 357 KIKSILS----NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRL 411
            I+  +      K  K+ F I S  RH   L     YL  A    +     + IA  LR 
Sbjct: 358 FIQQWMQKQQLGKNGKV-FLISS--RHHTILQHMRTYLLSAQEGLQSQSPPEFIALELRQ 414

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  + G ++G    E +L  IFS+FCIGK
Sbjct: 415 ALQTTGNLSGSEINETILGEIFSRFCIGK 443


>gi|329955507|ref|ZP_08296415.1| tRNA modification GTPase TrmE [Bacteroides clarus YIT 12056]
 gi|328525910|gb|EGF52934.1| tRNA modification GTPase TrmE [Bacteroides clarus YIT 12056]
          Length = 461

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 146/463 (31%), Positives = 245/463 (52%), Gaps = 31/463 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLDG- 58
           ++TI A++T A   AI  IR+SGP   ++   I       KK    +  +L +    DG 
Sbjct: 3   QDTICAIAT-AQGGAIGCIRVSGPEAIEITSRIFIPAATNKKLENGKPYTLTFGRIYDGP 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ L+ +F +P S+TGE+S E   HG   ++  +L+ L K    R+A PGE+++RAF
Sbjct: 62  EIIDEVLVSLFRAPHSYTGENSTEITCHGSAYILQKVLQLLIK-SGCRMATPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       D+L H  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTALRDQLLHFTSLIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+ E+++     E+      ++  I+  ++   +G  I+NG  + I+G +NAGKS+L N 
Sbjct: 181 SDHEELELADRSELCQLANNIEKVIARLVNSFSVGNAIKNGVPVAIVGETNAGKSTLLNV 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIV+DI GTTRD++   +++ G   +  DTAGIRET+D +E  GI+RTF +++ 
Sbjct: 241 LLNEEKAIVSDIHGTTRDIIEDTVNIGGITFRFIDTAGIRETNDTIESIGIERTFQKLDQ 300

Query: 299 ADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLYSTYTEEYDH-------- 341
           A+++L ++   +++ +I+       P+      I +  K+DL         +        
Sbjct: 301 AEIVLWIIDATDAQTQITQLAGQLLPRCERKQLILVYNKADLVDNIQNSIPNDFPDNVKS 360

Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLN-E 397
            ++S+   E +EEL   +  I S     +  +  I ++ RH   L+  +  +        
Sbjct: 361 IILSAKNREHIEELQQML--ITSAHLPTVTQNDVIVTNVRHYEALNNALESIHRVQKGLA 418

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   D +++++R     L  I G V  + +L  IF  FCIGK
Sbjct: 419 NNISGDFVSQDIRECIFHLSDIAGEVTNDMILQNIFQHFCIGK 461


>gi|260437683|ref|ZP_05791499.1| tRNA modification GTPase TrmE [Butyrivibrio crossotus DSM 2876]
 gi|292809909|gb|EFF69114.1| tRNA modification GTPase TrmE [Butyrivibrio crossotus DSM 2876]
          Length = 456

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 249/470 (52%), Gaps = 49/470 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKK-KKPFPRKASLRYFFG---LDG 58
           +ETI A++TG + S I IIR+SG   F V +  F+ KK KK      S    +G    + 
Sbjct: 2   RETIAAIATG-MGSGIGIIRISGEEAFSVIDKIFVPKKSKKKMSEVKSHTIHYGNIVFNN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ L++V  +P ++T ED+ E + HGG  V+  +LE + K    R A PGEF++RAF
Sbjct: 61  EIVDEVLVMVMAAPNTYTKEDTIEINCHGGSFVMKKVLEAVLK-SGARPAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I+S+ +   + S+  ++G+LS   G    ++ H  +FIEA LD 
Sbjct: 120 LNGRIDLSQAEAVIDIINSKNKYALKNSINLLNGKLSEQIGNLRAEIIHNVAFIEAALDD 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KL------GEIIRNGYKIVILGHSNAG 231
            E   + NF  K        L+N +   +    KL      G++   G   VILG  NAG
Sbjct: 180 PEHISLDNFGDK--------LENYVDKWVKTAEKLLITVDNGKLFTQGINTVILGKPNAG 231

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSS+ N L+ ++ AIVTDI GTTRD++   ++L G  + + DTAGIR T+DIVE  G+ +
Sbjct: 232 KSSILNILSGRERAIVTDIEGTTRDIIEEQINLNGITLNLIDTAGIRNTEDIVENIGVNK 291

Query: 292 TFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL--------YSTYTE 337
                E+ADLI+ + + + K +      +   KN   + +  KSDL            T 
Sbjct: 292 AKATAEDADLIMYVVDSSRKLDENDYEILKLIKNNKAVVLLNKSDLEPVITVDKMKELTN 351

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMA- 393
               L+S+    GLEEL + I  + +    K+ F+     S++R    L   +  L +  
Sbjct: 352 NRVFLVSAKENTGLEELTDYIVDMFTE--GKIDFNDEVYISNERDKAALDNALESLRLVK 409

Query: 394 -SLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            S+NE   G+  D    +L  A   LGKI G    + L++ IFSKFC+GK
Sbjct: 410 RSINE---GMPEDFYTIDLLNAYEELGKIIGESVEDDLVNEIFSKFCMGK 456


>gi|160889085|ref|ZP_02070088.1| hypothetical protein BACUNI_01506 [Bacteroides uniformis ATCC 8492]
 gi|317479360|ref|ZP_07938494.1| tRNA modification GTPase TrmE [Bacteroides sp. 4_1_36]
 gi|156861552|gb|EDO54983.1| hypothetical protein BACUNI_01506 [Bacteroides uniformis ATCC 8492]
 gi|316904434|gb|EFV26254.1| tRNA modification GTPase TrmE [Bacteroides sp. 4_1_36]
          Length = 464

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 156/467 (33%), Positives = 245/467 (52%), Gaps = 36/467 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL---DG 58
           ++TI A++T A   AI  IR+SGP   ++   I    +K K           FG    + 
Sbjct: 3   QDTICAIAT-AQGGAIGCIRVSGPDAIEITSRIFTPARKGKKLKDAKPYTLTFGHIHEEE 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ L+ +F +P S+TGEDS E   HG   ++  +L+ L      RLA PGE+++RAF
Sbjct: 62  NIIDEVLVSLFRAPHSYTGEDSTEIMCHGSSYILQKVLQLLIG-NGCRLAAPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
             GK+DL +AE++ADLI+S +    RL+M  M G  S       D+L H  S IE +LDF
Sbjct: 121 LGGKMDLSQAEAVADLIASTSAATHRLAMSQMRGGFSKELASLRDQLLHFTSLIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+ E+++     E+      ++  IS  +    +G  I+NG  + I+G +NAGKS+L NA
Sbjct: 181 SDHEELEFADRSELCLLADGIEQVISRLVQSFSVGNAIKNGVPVAIIGETNAGKSTLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIV+DI GTTRDV+   ++L G   +  DTAGIRET+D +E  GI+RTF ++E 
Sbjct: 241 LLNEERAIVSDIHGTTRDVIEDTVNLGGITFRFIDTAGIRETNDTIENLGIERTFQKLEQ 300

Query: 299 ADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLY--------STYTEEYDH 341
           A+++L ++   N+   I        P+      I +  K+DL         S++T    +
Sbjct: 301 AEIVLWIVDATNAVSRIPQLTTQILPRCEGKRLILVFNKTDLVQDASTIPNSSFTVAATN 360

Query: 342 LIS-SFTGEGLEELINKIKSILSNKFKKLPF-----SIPSHKRHLYHLSQTVRYLE--MA 393
           +   S + +G   L +K++ +L +    LP       I ++ RH   L+  +  +     
Sbjct: 361 VQCISISAKGRTNL-DKLQQMLISA-ANLPTVTQNDVIVTNIRHYEALTHALEAIHRVQQ 418

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L E   G D +++++R     L  I G V  + +L  IF  FCIGK
Sbjct: 419 GLAENLSG-DFVSQDIRECIFHLSDIAGEVTNDMVLGNIFEHFCIGK 464


>gi|42527683|ref|NP_972781.1| tRNA modification GTPase TrmE [Treponema denticola ATCC 35405]
 gi|81831356|sp|Q73KN7|MNME_TREDE RecName: Full=tRNA modification GTPase mnmE
 gi|41818511|gb|AAS12700.1| tRNA modification GTPase TrmE [Treponema denticola ATCC 35405]
          Length = 472

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 167/468 (35%), Positives = 247/468 (52%), Gaps = 38/468 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLD---GRI 60
           + I A++T   P+A+ I+R SG     +   I  K K     +  S+ + + LD    + 
Sbjct: 10  DPIAAIATALSPAALGIVRTSGEGAIDLASAIFSKPKKLKEAQGNSILHGWVLDPESKKE 69

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+  + V+  P+SFTGEDS EF  HGG AVV  I   L +    R A  GEF+ RAF N
Sbjct: 70  VDEVTVCVYREPKSFTGEDSVEFICHGGTAVVLKIYRLLIEN-GFRAAEGGEFTFRAFAN 128

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK DL  AE++ ++I+S+T++   L+   +SG L S   +   +LT + +  + ++++ E
Sbjct: 129 GKADLTRAEAVNEIINSKTDINIELAAGRLSGNLFSGIEEIKHELTAVIAAADVEIEYPE 188

Query: 181 EEDVQN--FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E+     FS   +L  I  LK+   S  ++    +I   G K+V+ G +NAGKSSLFNA
Sbjct: 189 DEETSQGAFSPDLILRIIEPLKDLADSWAAE----KIFIQGAKVVLAGKTNAGKSSLFNA 244

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L K+D AIV+DI GTTRD L   L+  G  V + DTAGIR T D +E  G++R+     N
Sbjct: 245 LLKEDRAIVSDIHGTTRDWLEASLNFNGIPVSLYDTAGIRYTQDSIEAIGVERSLEMSRN 304

Query: 299 ADLILLL---KEINS-----KKEISFPKNID--FIFIGTKSDLYSTYTEEYDH------- 341
           ADLIL L   K+I S     K +  F KN     I + TK DL  T ++E          
Sbjct: 305 ADLILYLCDPKDILSAGSLNKDDSEFIKNAKAPVITVITKEDLLDTESKEKIKEILKAEK 364

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVRYLEMA 393
                +ISS    G++ L  K  S+L+       FS  +    +R    + + +  L+ A
Sbjct: 365 IAEPIIISSKASNGIKALSEKAYSVLAKNTGSSGFSKTASLGSERQRDAVQKALDVLQTA 424

Query: 394 SLNE-KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             N  +   LD+I E+L  A   LG+ITG V  + +LD +FS FC+GK
Sbjct: 425 YQNSLEGFPLDLIVEDLEEALSFLGEITGEVRSDDILDKVFSGFCVGK 472


>gi|323445332|gb|EGB01994.1| hypothetical protein AURANDRAFT_9780 [Aureococcus anophagefferens]
          Length = 299

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 180/299 (60%), Gaps = 14/299 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFFGLDGRILDK 63
           +TI+A+S+G   + ++++R+SGPS       +   K P P  R ASLR        +LD+
Sbjct: 3   DTIYALSSGRGVAGVAVVRVSGPSASDALAALTPGK-PLPAHRVASLRTLRDASD-VLDE 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L++ F +P SFTGED  E H HGG A V+G+LE L  +P LR A+ GEF+RRAF  GK+
Sbjct: 61  ALVLRFEAPRSFTGEDVVELHCHGGEATVDGVLEALDNIPKLRAADRGEFTRRAFAAGKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE--E 181
            L E E LADL++++T  QRR ++  M G +   Y +W  +L  +R+  E  +DF +  E
Sbjct: 121 GLTEVEGLADLLAAKTAPQRRQALAQMGGSMERTYARWRGELASLRASAEVLVDFGDDVE 180

Query: 182 EDVQNFSS--KEVLN-DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            DV + S   +  L+  +  LK ++ + ++    GE  R+G ++V+ G  NAGKSSL NA
Sbjct: 181 GDVADQSDDIRAALDASVRSLKTELDAALTDAPRGEATRDGVRVVLAGAPNAGKSSLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETD--DIVEKEGIKRT 292
           +A +D AIV+   GTTRDVL I L L G   ++ DTAG+R   E D  D VE EG++R 
Sbjct: 241 VAARDAAIVSQAAGTTRDVLEIGLSLGGLPARLFDTAGLRVDGEEDSLDAVEVEGMRRA 299


>gi|119356003|ref|YP_910647.1| tRNA modification GTPase TrmE [Chlorobium phaeobacteroides DSM 266]
 gi|205829132|sp|A1BCU6|MNME_CHLPD RecName: Full=tRNA modification GTPase mnmE
 gi|119353352|gb|ABL64223.1| tRNA modification GTPase trmE [Chlorobium phaeobacteroides DSM 266]
          Length = 475

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 251/465 (53%), Gaps = 37/465 (7%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFG--LDG-RI 60
           I A++T     A++++R+SG + F +   + +K +    P          FG   DG  +
Sbjct: 16  IAAIATPLGVGALAVVRISGATAFDIAGRVFRKARDPHQPLSETPGYTAHFGRLYDGLTL 75

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ + +VF SP SFT ED  EF  HGG  V   +L+ L      RLA PGEF+RRAF N
Sbjct: 76  IDEVIALVFRSPSSFTAEDMVEFTCHGGPVVTRHVLQLLLD-NGCRLAEPGEFTRRAFLN 134

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDLL+AE++ ++I + +E   R ++  M G+LS+  G   +KL    + +E +LDFSE
Sbjct: 135 GKIDLLQAEAIGEMIHARSESAYRTAVIQMKGDLSATLGALREKLLRSCALLELELDFSE 194

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV+  S +E+  +I  L+++++  +   + G ++  G   VI G  NAGKS+L N L 
Sbjct: 195 E-DVEFQSREELRVEIASLQSEVARLVDSYQHGRLLTEGVATVIAGRPNAGKSTLLNTLL 253

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV+ +PGTTRD +      +  + +++DTAG+RET + +E EG++R+ +++  AD
Sbjct: 254 GEERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRETGEEIEHEGVRRSRMKMAEAD 313

Query: 301 LILL------------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342
           L+L             +KEI + K  +   +  F+ +  K DL    T     L      
Sbjct: 314 LLLYLLDLSREGMAEEIKEIVALK--AAHASSKFLVVANKIDLVPDATTLLCRLGEEAGC 371

Query: 343 ----ISSFTGEGLEELINKIKSILS--NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SL 395
               IS+    G++EL +++ S++   +K  +    + S  RH   L      L  A +L
Sbjct: 372 EAIGISARQKLGIDELKSRMSSMVEGLDKLHEASVLVTS-LRHYEALRNAGDALRNAQNL 430

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++    ++IA  LR A   +G+ITG V  E++L  IF +FCIGK
Sbjct: 431 LDEQADTELIAFELRAALDYVGEITGKVVNEEILHAIFERFCIGK 475


>gi|164657303|ref|XP_001729778.1| hypothetical protein MGL_3322 [Malassezia globosa CBS 7966]
 gi|159103671|gb|EDP42564.1| hypothetical protein MGL_3322 [Malassezia globosa CBS 7966]
          Length = 444

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 137/432 (31%), Positives = 215/432 (49%), Gaps = 51/432 (11%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP------NLRLANPGEF 113
           +LD  L + FP   SFTG+ + E H+HG  AVV  +LE L  M       ++R A PGEF
Sbjct: 13  LLDDALAVYFPHGRSFTGQATLELHLHGSPAVVRDVLEALDAMRTVLSTRDMRPALPGEF 72

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAFE+G++DL   E+L  L+ +ET  QRRL+     G  + LY +   +L    S +E
Sbjct: 73  TRRAFEHGRLDLTACEALDSLLHAETSQQRRLAQWAAQGYQAQLYDRLYAQLVQAMSQME 132

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI------SQGKLGEIIRNGYKIVILGH 227
           A LDFS+E+DV       V   I  ++  ++S +      ++    + +  G +I + G 
Sbjct: 133 AMLDFSDEDDVNEHLWISVHETIHGMRQYLASELQLNTPPTRRSYADAVMQGVRIALYGR 192

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL N L ++D AIVT   GTTRDVL + ++L GY V ++DTAG+R + D VE+ 
Sbjct: 193 PNAGKSSLLNRLVRRDAAIVTPYAGTTRDVLEVCMELAGYRVTLADTAGVRASQDAVEQI 252

Query: 288 GIKRTFLEVENADLILLL---------------------------KEINSKKEISFPKNI 320
           G++RT   V  AD+ +L+                            ++ +K  +     +
Sbjct: 253 GVERTQAYVAEADMCVLVCTPQDFQHDLPPAGPCRIPAATLERLGVQMQAKPVLILINKM 312

Query: 321 DFIF-IGTKSDLYSTYTEEYDH--------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
           D  + IG             DH          S     G++ L+N++ S ++  +     
Sbjct: 313 DECWDIGGDHTSSPLSKGRCDHEGVECHVWHASVLHDVGMDLLMNELGSHVARMYDTNQV 372

Query: 372 SIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQL 428
           ++P  +  RH + L   V  L+      +   L ++AE LR A+  L ++TG  +  + +
Sbjct: 373 TMPLVTQARHRHILMDVVACLDTVLATRESPDLVVVAEELRHAAHLLAQVTGRTITSDTV 432

Query: 429 LDIIFSKFCIGK 440
           L  IF++FCIGK
Sbjct: 433 LGEIFARFCIGK 444


>gi|160941470|ref|ZP_02088805.1| hypothetical protein CLOBOL_06361 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435616|gb|EDP13383.1| hypothetical protein CLOBOL_06361 [Clostridium bolteae ATCC
           BAA-613]
          Length = 459

 Score =  205 bits (522), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 249/460 (54%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------PFPRKASLRYFFGLDG- 58
           +TI A++TG   S I I+R+SG   F V + I + +K         +  ++ Y +  DG 
Sbjct: 4   DTIAAIATGMSNSGIGIVRISGEQAFSVIDSIFRNRKGERVRLSLSQSHTVHYGYIYDGD 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+I+   P S+T ED+ E   HGG+ +V  ILE +      R A PGEF++RAF
Sbjct: 64  EKVDEALVIIMKGPHSYTAEDTVEIDCHGGVLMVRRILETVLH-AGARTAEPGEFTKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++AD+I +  E   + S+  +SG +S+   +   ++ +  +FIE+ LD 
Sbjct: 123 LNGRLDLSQAEAVADVIHATNEYALKSSVSQLSGSVSAKIKELRSRILYQIAFIESALDD 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E   +  + S+ +++D++ +  ++   +     G ++  G K VILG  NAGKSSL N 
Sbjct: 183 PEHISLDGYGSR-LMDDLVPMIGEVRKLLLSADDGRVMSEGVKTVILGKPNAGKSSLMNV 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVT+I GTTRD L   + L+G  + + DTAGIR+T+D+VEK G+ R      +
Sbjct: 242 LLGEERAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDVVEKIGVDRAMKAARD 301

Query: 299 ADLILLLKEIN-----SKKE-ISFPKNIDFIFIGTKSDL-YSTYTEEYDHL-------IS 344
           ADLI+ + + +     S +E I F ++   I +  KSDL     T E + +       +S
Sbjct: 302 ADLIIYVVDGSRPLDESDREIIEFIRDRKTIVLLNKSDLDLEVGTAELEQICGHKVLPVS 361

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDC- 400
           +   +G+E L  +IK +  +    L F+     ++ RH   L Q +  L M   + +D  
Sbjct: 362 AKEEQGIELLEQEIKKLFYH--GDLSFNDQVYITNARHKEALEQCLESLLMVKGSVEDSM 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D  + +L  A   LG I G    + +++ IF+KFC+GK
Sbjct: 420 PEDFYSIDLMNAYEQLGFIIGEAVDDDVVNEIFAKFCMGK 459


>gi|298372710|ref|ZP_06982700.1| tRNA modification GTPase TrmE [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275614|gb|EFI17165.1| tRNA modification GTPase TrmE [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 464

 Score =  205 bits (522), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 150/468 (32%), Positives = 247/468 (52%), Gaps = 45/468 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR----------YFFGL 56
           TI AVST +    I+++R+SG   F + + I     P  RKASLR               
Sbjct: 8   TICAVSTASGVGGIAVLRISGKEAFDIVDKIFV---PVGRKASLREQNPYTVSYGKIVDA 64

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           D  I+D  L+ VF  P SFTGE+  E   HG I +   IL  L       LA PGEF++R
Sbjct: 65  DNSIVDNVLVSVFKEPHSFTGENVVEIACHGSIYIQQAILRLLVD-NGCVLATPGEFTKR 123

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF  GK+DL +AE++ADLI+S ++   ++++  M G  S+      ++L +  S IE +L
Sbjct: 124 AFVGGKMDLSQAEAVADLIASTSKASHQMAIRQMRGGFSAELALLREQLLNFVSLIELEL 183

Query: 177 DFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           DFSEE DV+ F+ +E L  +   ++  I+  ++  K+G +I+NG  + ++G +N GKS+L
Sbjct: 184 DFSEE-DVE-FADREELKSLADSIERRIAELVASFKIGNVIKNGVPVALVGKTNVGKSTL 241

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N+L  ++ AIV+D+ GTTRD +   + ++G   +  DTAGIR T D VE  GI+RT+ +
Sbjct: 242 LNSLLNEERAIVSDVHGTTRDSIEDSIVIDGVTFRFIDTAGIRTTTDEVENLGIERTYRK 301

Query: 296 VENADLILL---------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           ++ A+++L          +KE   +  ++  K I  I     + L     +EY  ++ S 
Sbjct: 302 IDEAEIVLWIVDATQTSDIKEDIEQNSLNLSKTILVI-----NKLDKISDDEYQKILHSV 356

Query: 347 TGEGLEEL---------INKIKSILSNKFK----KLPFSIPSHKRHLYHLSQTVRYLEMA 393
               +E +         I+++  +L +K       +   I ++ RH   L++    +   
Sbjct: 357 ENLNVEYIFISAKQRMNIDRLHKMLIDKMNLNKIDIDAVIVNNVRHYEALTRASEAIMRV 416

Query: 394 SLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   E     D+++ ++R     LG+ITG +  +++L+ IF KFCIGK
Sbjct: 417 TEGLESGISGDLLSLDIRDCMHYLGEITGQISTDEILNNIFGKFCIGK 464


>gi|294055629|ref|YP_003549287.1| tRNA modification GTPase TrmE [Coraliomargarita akajimensis DSM
           45221]
 gi|293614962|gb|ADE55117.1| tRNA modification GTPase TrmE [Coraliomargarita akajimensis DSM
           45221]
          Length = 453

 Score =  205 bits (522), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 146/457 (31%), Positives = 234/457 (51%), Gaps = 30/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKG 64
           +TI A+ST A  SAI++IRLSGP C  +   +  +     PR A    +  + G ++D  
Sbjct: 5   DTIVALSTPAGESAIAVIRLSGPLCPSIAMQVMGRSTALKPRYAHYGSYTSVGGDLIDDC 64

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +  +F S +SFTGE   E   HG   +V  I+E+L K      A PGEF+R AF NGKID
Sbjct: 65  VFTLFESGKSFTGEAMLEIAPHGNPMIVQRIVEDLLKR-GCCAAEPGEFTRTAFLNGKID 123

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE+++DLI + +E    ++   + G +     +  +++  + + +EA +DF EE D+
Sbjct: 124 LSQAEAVSDLIRARSERSIEVAQRQLHGSVGRKMSELTERVLAVMAHLEAYIDFPEE-DL 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                     D+  L  ++   +       ++  G K +I+G  N GKSSL NAL   + 
Sbjct: 183 PPEDQAGPSQDLRQLIQEVRELVETQHYNALLHEGIKTLIVGEPNVGKSSLINALTGTER 242

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL- 303
           AIV+D+PGTTRD ++  L L  + ++I DTAG+ E  D +E+ GI+ T  + E AD  L 
Sbjct: 243 AIVSDVPGTTRDFISSFLMLGPWRIEILDTAGLHEAGDAIEQIGIQHTIEQAETADFFLV 302

Query: 304 --------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTG 348
                         LL+ ++SK  +      D        + ++ +  E  H  +S  T 
Sbjct: 303 VVDATQPSPTLPVELLERLSSKNALVLVNKTDL----ASPEPHAEFLPELPHCPLSLLTN 358

Query: 349 EGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-D 403
            G+E    + +  I + L+         +  + RH   L++     E+A+   KD  L +
Sbjct: 359 VGMERFRADWLKAIDAGLTGPIATDGLVV--NARHAAALTEAADAFELAAQKLKDDELAE 416

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++A +LR A  S+GK+ G VD E++LD +F +FCIGK
Sbjct: 417 LVAADLRDAVDSIGKVVGKVDNERMLDSLFKQFCIGK 453


>gi|108760478|ref|YP_635609.1| tRNA modification GTPase TrmE [Myxococcus xanthus DK 1622]
 gi|123073862|sp|Q1CVG4|MNME_MYXXD RecName: Full=tRNA modification GTPase mnmE
 gi|108464358|gb|ABF89543.1| tRNA modification GTPase TrmE [Myxococcus xanthus DK 1622]
          Length = 442

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/428 (32%), Positives = 229/428 (53%), Gaps = 12/428 (2%)

Query: 20  ISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
           + I+RLSGP    V   +      +P PR A L  F   +GR LD+GL + F  P+SFTG
Sbjct: 20  VGILRLSGPEALDVGRLLAPGVPAQPTPRHAYLASFVDAEGRSLDEGLFLYFRGPQSFTG 79

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HG   ++  +L    +   +R A PGEF+RRAF NG++DL  AE++ADL+++
Sbjct: 80  EDVVELQAHGSPRLLRLLLTRALEDARVRHAAPGEFTRRAFLNGRLDLTRAEAVADLVAA 139

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           ++E   R +  G+SG L+S      + L  + + +E  L F +E +    + ++V   + 
Sbjct: 140 DSEAAVRAAAAGLSGALASRVQALEEPLRALHADMEGVLSFPDEAE---GADEDVGERVT 196

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L+    + +++   G ++R G ++ + G  NAGKS+LFN L  +  A+V D PGTTRD 
Sbjct: 197 ALRAQAETLLAEVGRGRLVRRGARVALFGPVNAGKSTLFNRLVGEARALVDDEPGTTRDA 256

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEI-S 315
           L   ++ +G  V + DTAG+RET   VE  GI RT   +   DL +L+L    ++ E+ +
Sbjct: 257 LEARVEWDGLAVTLFDTAGLRETPGRVEALGIARTRALLTGVDLAVLVLPPGVTQAEVEA 316

Query: 316 FPKNID---FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           + +++     + +  K D+    +      +S  TGEG++ L + +   L         +
Sbjct: 317 WTRDVGGTPVLVVDGKCDVAEVSSSPRQR-VSGLTGEGVDALRDDMLGRLWGGGTPSAVA 375

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432
           + S +RH   L +    L  A    +   L++++  + LA  +LG+++G V  E LLD I
Sbjct: 376 LVS-ERHADALRRASEALGRAESASRVSTLEVVSGEVGLALEALGEVSGTVVSEALLDAI 434

Query: 433 FSKFCIGK 440
           F +FCIGK
Sbjct: 435 FQRFCIGK 442


>gi|307243432|ref|ZP_07525588.1| tRNA modification GTPase TrmE [Peptostreptococcus stomatis DSM
           17678]
 gi|306493156|gb|EFM65153.1| tRNA modification GTPase TrmE [Peptostreptococcus stomatis DSM
           17678]
          Length = 459

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 161/461 (34%), Positives = 256/461 (55%), Gaps = 32/461 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY-----FFG--LDG 58
           +TI A++T      I IIR+SGP   ++   I     PF + + L Y      +G  LDG
Sbjct: 5   DTIAAIATAPGQGGIGIIRISGPDSLKIANKIFS---PFHKGSILDYPIRTLIYGNILDG 61

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ LL     P S+T ED  E + HGG   V  ILE + K    R+A  GEF++RA
Sbjct: 62  DTIIDEVLLAYMKGPNSYTAEDVIEINCHGGFISVRKILELVLK-SGARMAQEGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+++TE    ++   + G LS       D++T I + +E  +D
Sbjct: 121 FLNGRIDLSQAEAVIDIINAKTEESHNVAQSQLEGTLSKKIRSLRDQITGILAQLEVAID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + EE D++  + KE+++  + + N +         G+I+R G K  ILG  N GKSSL N
Sbjct: 181 YPEE-DIEFITYKELVDQTIDVNNQVKKLYQTADTGKILREGLKTAILGKPNVGKSSLMN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            +  +D AIVTDIPGTTRDV+   ++++G  +KI DTAGIR TDD+VEK G++++   ++
Sbjct: 240 LILGEDRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRATDDLVEKIGVEKSREHMK 299

Query: 298 NADLILLLKEIN---SKKEISFPKNID---FIFIGTKSDL--------YSTYTEEYDHL- 342
            ADL L++ + +    +++I   +NID    + I  K+DL          +Y +  + + 
Sbjct: 300 LADLALVVLDSSRPLDQEDIQILENIDQAKSLVILNKTDLACQMDIESLKSYVDTKNIIN 359

Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKD 399
           IS+  G+G++ + ++++  +   K       + ++ RH   + + +  +  A  SLN++ 
Sbjct: 360 ISALKGQGIDLIHDRMEDLVFEGKISDSSDLMITNSRHRDAIYKAMVSIGDAINSLNDR- 418

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D I  +L+ A  SLG I G    E LLD IFS FCIGK
Sbjct: 419 LPYDFIEVDLKDAWDSLGCINGDTIEEDLLDTIFSNFCIGK 459


>gi|298384325|ref|ZP_06993885.1| tRNA modification GTPase TrmE [Bacteroides sp. 1_1_14]
 gi|298262604|gb|EFI05468.1| tRNA modification GTPase TrmE [Bacteroides sp. 1_1_14]
          Length = 465

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 157/469 (33%), Positives = 247/469 (52%), Gaps = 39/469 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFG--LDGR 59
           ++TI A++T A   AI  IR+SGP    +   I    K  K    +      FG   +G 
Sbjct: 3   QDTICAIAT-AQGGAIGSIRVSGPEAISITSRIFQPAKAGKLLSEQKPYTLTFGRIYNGE 61

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EIIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +   ++  IS  +    +G  I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLVHSFNVGNAIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTINISGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298

Query: 298 NADLILLL-------KEINSKKEISFPK--NIDFIFIGTKSDLY-STYTEEYDHLISSFT 347
            A+++L +        +I    E   P+      I +  K+DL      EE   L+ +F 
Sbjct: 299 QAEIVLWMVDSSDASSQIKQLSEKIIPRCEEKQLIVVFNKADLIEEKQKEELSALLKNFP 358

Query: 348 GEGLEELI---------NKIKSILSNKFKKLPFS-----IPSHKRHLYHLSQTVRYLEMA 393
            E  + +          ++++ +L N    LP       I ++ RH   LS+ +  +   
Sbjct: 359 KEYTKSIFISAKERKQTDELQKMLINA-AHLPTVTQNDIIVTNVRHYEALSKALDAIHRV 417

Query: 394 S--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              L+    G D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 418 QDGLDSHISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|312873279|ref|ZP_07733334.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2052A-d]
 gi|311091159|gb|EFQ49548.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2052A-d]
          Length = 461

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 150/465 (32%), Positives = 261/465 (56%), Gaps = 42/465 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTEKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176
           G+IDL +AES+ D+I ++T+  R+++++ + G    E+  L  + ++ + H     E ++
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAIKQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL 
Sbjct: 183 DYPEY-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L+K++ AIVT+I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEE-----YDHLI 343
             +DL+LLL  INS +E++          ++   I I  K+D  +  T++      D  I
Sbjct: 302 TESDLVLLL--INSSEELTEEDQKLLELTQDKKRIIILNKADQVAKITKKDIQKITDSPI 359

Query: 344 SSFT------GEGLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
            + +        GLEE I  +  + I  +K + +  +    +  L   ++      + ++
Sbjct: 360 VTISVLKKQNMTGLEEAIKSLFLQGIADSKSEVMVTN--QRQNDLLRKAKQSLIEAIEAI 417

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           N+ +  LD++  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 418 ND-NMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461


>gi|309804827|ref|ZP_07698889.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 09V1-c]
 gi|309809783|ref|ZP_07703637.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 2503V10-D]
 gi|308165766|gb|EFO67987.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 09V1-c]
 gi|308169962|gb|EFO72001.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 2503V10-D]
          Length = 461

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 259/465 (55%), Gaps = 42/465 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L  V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLATVMLAPKTFTRENTVEVSCHGGLLVTEKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176
           G+IDL +AES+ D+I ++T+  R+++M+ + G    E+  L  + ++ + H     E ++
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL 
Sbjct: 183 DYPEY-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L+K++ AIVT+I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDH------- 341
             +DL+LLL  INS +E++          ++   I I  K+D  +  T++          
Sbjct: 302 TESDLVLLL--INSSEELTEEDQKLLKLTQDKKRIVILNKADQVAKITKKDIQKITDSPI 359

Query: 342 -LISSFTGE---GLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
             IS    +   GLEE I  +  + I  +K + +  +    +  L   ++      + ++
Sbjct: 360 VTISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMVTN--QRQNDLLRKAKQSLIEAIEAI 417

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           N+ +  LD++  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 418 ND-NMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461


>gi|158321890|ref|YP_001514397.1| tRNA modification GTPase TrmE [Alkaliphilus oremlandii OhILAs]
 gi|166988168|sp|A8MKR9|MNME_ALKOO RecName: Full=tRNA modification GTPase mnmE
 gi|158142089|gb|ABW20401.1| tRNA modification GTPase TrmE [Alkaliphilus oremlandii OhILAs]
          Length = 461

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 253/465 (54%), Gaps = 38/465 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFG--LDGR-- 59
           +TI A++T    + I I+R+SG    ++ + I K K  K   +  S R  +G  +D +  
Sbjct: 5   DTIAAIATAPGEAGIGIVRISGEKAIELIDKIFKSKDHKVLSQYKSRRITYGHIIDPKTE 64

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+     P ++T ED  E + HGG+  V  ILE + ++   R+A PGEF++RAF
Sbjct: 65  KVVDEVLVSYMKGPNTYTREDIVEINCHGGMIPVKNILELVLRV-GARMAEPGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLIS++TE    +++  + G LS    +  +KL  + + +E  +DF
Sbjct: 124 LNGRIDLAQAEAIMDLISAKTEKGFDVALSQLEGSLSKKVAKVREKLLDMLAHVEVSIDF 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E+ DV   +   +LN  L ++ DI   +     G+IIR G   VI+G  N GKSSL NA
Sbjct: 184 AED-DVDEVALDYLLNKSLEVEGDIQKLLDTADTGKIIREGLSTVIVGKPNVGKSSLLNA 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTD+PGTTRD++   L+++G  +++ DTAGIR+T+DIVEK G++R+      
Sbjct: 243 LVRESRAIVTDVPGTTRDIIEEHLNIKGIPLRLIDTAGIRDTEDIVEKIGVERSKELFNL 302

Query: 299 ADLILLL----KEINSK--KEISFPKNIDFIFIGTKSDLYS----TYTEE--YDHLISSF 346
           ADLI+++    +E+  +  + I   +N   + I  K+DL      T  +E   D  I   
Sbjct: 303 ADLIIVMLDASRELTEEDLRIIELIENKRALVIINKTDLQQKLNLTPIQEIIQDKKIIKV 362

Query: 347 T----------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASL 395
           +           + L E++ K  +   +        + ++ RH   L + +   ++    
Sbjct: 363 SLIEEIGLEEIEDALAEMVYKGGAKAKDSL------LVTNVRHKNALERALDSIIDGTKA 416

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            E+   LD +  +++ +  +LG+ITG    E ++D IF  FCIGK
Sbjct: 417 IEQKLPLDFVEVDIKNSWKALGEITGDTVEEDIIDHIFKNFCIGK 461


>gi|154503056|ref|ZP_02040116.1| hypothetical protein RUMGNA_00878 [Ruminococcus gnavus ATCC 29149]
 gi|153796297|gb|EDN78717.1| hypothetical protein RUMGNA_00878 [Ruminococcus gnavus ATCC 29149]
          Length = 458

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 157/471 (33%), Positives = 245/471 (52%), Gaps = 50/471 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRIL 61
           K+TI A+STG   S I I+R+SG   F + + I K K+   +  S    +G        +
Sbjct: 3   KDTIAAISTGMTNSGIGIVRISGEEAFAIIDRIYKGKEQLSQAESHTIHYGFIKDREETI 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ V  +P +FTGED+ E + HGG  VV  +LE + K    R A PGEF++RAF NG
Sbjct: 63  DEVLVSVMRAPRTFTGEDTVEINCHGGTFVVRKVLETVIK-NGARPAEPGEFTKRAFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ D+I+S+ E   + SM  + G +     +   ++ +  +FIE  LD  E 
Sbjct: 122 KMDLSQAEAVIDVITSQNEYALKSSMSQLKGSVKRKIEEMRKEILYHTAFIETALDDPEH 181

Query: 182 EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
             V  +    + V   IL    D+   I     G I++ G + VI+G  NAGKSSL N L
Sbjct: 182 ISVDGYGETLQTVTEGILRELEDL---IRSSDDGRILKEGIQTVIVGKPNAGKSSLLNVL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           + ++ AIVTDI GTTRDVL   + L+G  + I DTAGIR+T+D++EK G+++     ++A
Sbjct: 239 SGRERAIVTDIEGTTRDVLEEQIHLQGLSLNIIDTAGIRDTEDVIEKMGVEKAKEYAKSA 298

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL-- 351
           DL++ + +       N +K ++   +   I +  K+DL +  ++E   L     G  +  
Sbjct: 299 DLVIYVVDASRSLDENDQKILNLVLDKKAIILLNKTDLETVVSKEM--LAEQLLGREIPM 356

Query: 352 ------EEL-INKIKSILSNKFKK--LPF-------------SIPSHKRHLYHLSQTVRY 389
                 EEL I +++  L   F K  L F             ++ S +  L+ + +++  
Sbjct: 357 IEISAKEELGIQELEKTLEKMFLKGSLSFNDEIYITNIRQKAALQSARESLHKVIESI-- 414

Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                  E +   D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 415 -------ENEMPEDFYSIDLMDAYESLGSITGETIGEDLVNEIFSKFCMGK 458


>gi|325912241|ref|ZP_08174638.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 143-D]
 gi|325475900|gb|EGC79069.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 143-D]
          Length = 461

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 259/465 (55%), Gaps = 42/465 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176
           G+IDL +AES+ D+I ++T+  R+++M+ + G    E+  L  + ++ + H     E ++
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL 
Sbjct: 183 DYPEY-DMDDVTSKEMYDKAHQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L+K++ AIVT I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NYLSKEEKAIVTSIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDH------- 341
             +DL+LLL  INS +E++          ++   I I  K+D  +  T++          
Sbjct: 302 TESDLVLLL--INSSEELTEEDQKLLELTQDKKRIIILNKADQVAKITKKDIQKITDSPI 359

Query: 342 -LISSFTGE---GLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
             IS    +   GLEE I  +  + I  +K + +  +    +  L   ++      + ++
Sbjct: 360 VTISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMVTN--QRQNDLLRKAKQSLIEAIEAI 417

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           N+ +  LD++  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 418 ND-NMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461


>gi|126662354|ref|ZP_01733353.1| tRNA modification GTPase [Flavobacteria bacterium BAL38]
 gi|126625733|gb|EAZ96422.1| tRNA modification GTPase [Flavobacteria bacterium BAL38]
          Length = 471

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 158/477 (33%), Positives = 253/477 (53%), Gaps = 50/477 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG------- 55
           +ETI A++T +   AI+IIRLSG +   +    F     K   ++ +     G       
Sbjct: 4   QETIVALATPSGAGAIAIIRLSGAAAITIAADVFQSVSGKDITKQKTHTIHLGHIVDAST 63

Query: 56  ---LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
                G++ D+ LL +F  P S+TGE+  E   HG   +   I++ L +    ++A  GE
Sbjct: 64  SSGQAGKVYDQVLLSIFKGPNSYTGENVIEISCHGSTFIQQQIIQLLLR-KGAKMAQAGE 122

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+ RAF NGK+DL +AE++ADLI+S+ E   +++M+ M G  S+   +  ++L +  S I
Sbjct: 123 FTLRAFLNGKLDLSQAEAVADLIASDNEASHQIAMQQMRGGFSNEIAKLREELLNFASLI 182

Query: 173 EADLDFSEEEDVQNFSSKEVLNDIL-----FLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           E +LDF+EE DV+ F+ +   +++L      LK  I S      +G +I+NG  + I+G 
Sbjct: 183 ELELDFAEE-DVE-FADRTQFHELLERIEFVLKRLIDSF----AVGNVIKNGIPVAIVGE 236

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKS+L NAL  ++ AIV+DI GTTRD +  +L + G   +  DTAGIRET D+VE  
Sbjct: 237 PNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELVINGMSFRFIDTAGIRETKDVVESI 296

Query: 288 GIKRTFLEVENADLILL------LKEINSKKEI---------SFPKNIDFIFIGTKSDLY 332
           GI++TF ++E A ++L       + E  S + +          FP     + I  K+DL 
Sbjct: 297 GIQKTFEKIEQAQVVLFILDGRWMMEAGSLEAVKIEFEKIKNKFPLK-PVVVIANKADLL 355

Query: 333 ST-------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           S         T E    +S+   EG++EL N + S ++    +   +I ++ RH   L +
Sbjct: 356 SADQKNNIQATIENILFLSAKQKEGIDELKNTLLSFVNTGALRNNETIVTNTRHYDSLLK 415

Query: 386 TVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  ++       + GL  D++A ++R A    G+ITG V  ++LL  IF+ FCIGK
Sbjct: 416 ALEEVQKVKWG-LNSGLSSDLMAIDIRSALYFFGEITGEVTNDELLGNIFANFCIGK 471


>gi|28199975|ref|NP_780289.1| tRNA modification GTPase TrmE [Xylella fastidiosa Temecula1]
 gi|182682729|ref|YP_001830889.1| tRNA modification GTPase TrmE [Xylella fastidiosa M23]
 gi|32130200|sp|Q879S5|MNME_XYLFT RecName: Full=tRNA modification GTPase mnmE
 gi|28058106|gb|AAO29938.1| thiophene and furan oxidation protein [Xylella fastidiosa
           Temecula1]
 gi|182632839|gb|ACB93615.1| tRNA modification GTPase TrmE [Xylella fastidiosa M23]
 gi|307579023|gb|ADN62992.1| tRNA modification GTPase TrmE [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 451

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 144/434 (33%), Positives = 226/434 (52%), Gaps = 19/434 (4%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           I IIR+SG     +   +       PR A    F  +D +++D GL I FP+P SFTGED
Sbjct: 24  IGIIRISGSQIKTIATGLGMTTLR-PRYAHYTRFLDVDDQVIDDGLAIWFPAPHSFTGED 82

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HG   ++  +L     +   R A PGEFS RAF NGK+DL++AE++AD+I +  
Sbjct: 83  VLELQGHGSPLLLRQLLTRCLDL-GARQARPGEFSERAFLNGKLDLIQAEAIADMIGAAD 141

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
               R +   + G  S        +L  +R  +EA +DF++E  +      ++   +  L
Sbjct: 142 LRAARAARRSLDGVFSRRCEALAQQLVRLRIHVEATIDFADES-LDTLDRAQIRTSLQTL 200

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             +++  +   + G+ + +G   V++G  N GKSSL NAL   D AIVTD+PGTTRD L 
Sbjct: 201 NVELTQLLRDAEHGKRLCDGLYTVLVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLR 260

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-----KEINS---- 310
             +   G    + DTAG+R   D +E+EG++RT  E++ ADL L++      +I S    
Sbjct: 261 ESVHFHGLEFVLVDTAGLRGEGDAIEREGMRRTLNELQRADLALVVLDACDPQIGSLALA 320

Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNK-F 366
               S P+    ++I  K DL +      D     +S+ TG GL+ L  +++++L  +  
Sbjct: 321 DALTSVPR---VLWIHNKLDLLTEPPSVLDTDVIPVSAMTGAGLDTLKTRLRTLLLGETV 377

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
           + +     +  RH+  L +T  ++  A+       L++ AE LRLA  +LG+I G +  +
Sbjct: 378 ETIEGEFSARLRHVQALQRTAAHVTDANAQFSYEHLELTAEELRLAYKALGEINGSMSPD 437

Query: 427 QLLDIIFSKFCIGK 440
           +LL  IFS FCIGK
Sbjct: 438 ELLGRIFSNFCIGK 451


>gi|255283806|ref|ZP_05348361.1| tRNA modification GTPase TrmE [Bryantella formatexigens DSM 14469]
 gi|255265689|gb|EET58894.1| tRNA modification GTPase TrmE [Bryantella formatexigens DSM 14469]
          Length = 459

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 241/460 (52%), Gaps = 31/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFPRKASLRYFFGLDG-R 59
           +TI A+STG   S I I+R+SG   F V + + + K        P   +++Y F  DG  
Sbjct: 6   DTIAAISTGMTSSGIGIVRISGTDAFAVADRMYRAKSGKRLSDMPSH-TIQYGFIADGSE 64

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L+++  +P SFT ED+ E + HGG+  +  ILE LA     RLA PGEF++RAF 
Sbjct: 65  IIDEVLVMLMRAPRSFTAEDTVEINCHGGVYAMKRILE-LAVKSGARLAEPGEFTKRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I ++ E   + S+  + G +  +     +K+ +  +FIE+ LD  
Sbjct: 124 NGRIDLSQAEAVIDVIQAKNEYALKSSVSQLKGSVLKVIRALREKIIYEVAFIESALDDP 183

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +  +  + +   I  +K ++   I+  + G+ IR G + VI+G  NAGKSSL N L
Sbjct: 184 EHISLDEYPER-LQEQIRPMKEELEKLIASAENGKRIREGIRTVIVGKPNAGKSSLLNVL 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVT+I GTTRD L  ++ + G  ++I DTAGIR+T D VEK G+++     E+A
Sbjct: 243 LGEERAIVTEIAGTTRDTLEEEIQIHGVSLQIIDTAGIRDTQDTVEKIGVEKALAYAEDA 302

Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
           DLIL               ++ +I  KK I     +D   + ++  +     +     +S
Sbjct: 303 DLILYVADAATGLDENDIRIMDKIREKKVIVLLNKMDLEVVTSEEQIREILNKPVIP-VS 361

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-- 402
           +    G++ L N IK +      K+ F+   +  ++   +     LE     E+   +  
Sbjct: 362 AKEESGIDILENTIKEMFYE--GKISFNDEVYITNMRQKAALEAALESLCRVEESIAMQM 419

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D  + +L  A   LG ITG    E L++ IF +FC+GK
Sbjct: 420 PEDFFSIDLMSAYEELGNITGESVGEDLINEIFGRFCMGK 459


>gi|153807730|ref|ZP_01960398.1| hypothetical protein BACCAC_02012 [Bacteroides caccae ATCC 43185]
 gi|149129339|gb|EDM20553.1| hypothetical protein BACCAC_02012 [Bacteroides caccae ATCC 43185]
          Length = 465

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 157/469 (33%), Positives = 251/469 (53%), Gaps = 39/469 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG--LDGR 59
           ++TI A++T A   AI  IR+SGP    +   I K  K    F  +      FG   DG 
Sbjct: 3   QDTICAIAT-AQGGAIGSIRVSGPEAISITSRIFKPAKAGKLFNDQKPYTLTFGRIYDGE 61

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ L+ +F +P S+TGE+S E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EIIDEVLVSLFRAPHSYTGENSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +   ++  IS  +    +G  I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLVHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++
Sbjct: 239 VLLNEERAIVSDIHGTTRDVIEDTINIGGVTFRFIDTAGIRETNDTIESLGIERTFQKLD 298

Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLY-STYTEEYDHLISSFT 347
            A+++L ++  +N+  +I        P+      I +  K+DL      E+   L+  F+
Sbjct: 299 QAEIVLWMIDSVNAASQIEQLSEKIIPRCEGKHLIAVFNKADLIEEKQKEDLLTLLKDFS 358

Query: 348 GEGLEELI---------NKIKSILSNKFKKLPFS-----IPSHKRHLYHLSQTVRYLEMA 393
            E  E +           +++ +L N    LP       I ++ RH   LS+ +  +   
Sbjct: 359 KEYTESIFISAKQRGNTEELQKMLINA-AHLPTVTQNDIIVTNVRHYEALSKALEAIHRV 417

Query: 394 S--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              L+ +  G D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 418 QDGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|313205615|ref|YP_004044792.1| tRNA modification GTPase trme [Riemerella anatipestifer DSM 15868]
 gi|312444931|gb|ADQ81286.1| tRNA modification GTPase trmE [Riemerella anatipestifer DSM 15868]
 gi|325334957|gb|ADZ11231.1| Predicted GTPase [Riemerella anatipestifer RA-GD]
          Length = 463

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 160/470 (34%), Positives = 257/470 (54%), Gaps = 40/470 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR-I 60
           ++++TI A++T     AI IIR+SG +   +   I K K      + +L Y F + G  +
Sbjct: 2   NQQDTICALATANGVGAIGIIRVSGDNSINITNTIFKGKDLTKVDSHTLHYGFIVQGEEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ ++ +F +P+SFT EDS E   HG   +   IL+ L      R+A  GEFS RAF N
Sbjct: 62  IDEVMISIFKAPKSFTTEDSVEISFHGSPFIGKRILD-LLIANGCRMAKAGEFSMRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ADLI+SE+E  R++++  + G +S+      + L +  S IE +LDF+E
Sbjct: 121 GRIDLSQAESIADLIASESEAARKVALNQLKGGISNEISILRNDLLNFTSLIELELDFAE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV+     E+   +  LK+ +   +   + G  ++NG ++ I+G  NAGKS+L NAL 
Sbjct: 181 E-DVEFADRTELTQLLQKLKSKLGGLLESFQYGNAVKNGVQVAIIGKPNAGKSTLLNALL 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIV+DI GTTRD +   L + G+  +  DTAGIR+T D VE  G+++   ++  AD
Sbjct: 240 KEERAIVSDIAGTTRDTIEEVLHIGGHAFRFIDTAGIRDTADRVESIGVEKAKEKINTAD 299

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDL----------YSTYTEEYDH-------LI 343
           ++L L +I   K+ +  + I+FI    + DL           S  TE  D        L+
Sbjct: 300 ILLYLFDI---KDSTPNEIINFITSLERPDLKVILLQNKIDSSNETEINDFWKQLKEVLV 356

Query: 344 SSFTG----------EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ---TVRYL 390
            +FT           + +E L N++ S +  + K    +I +++RH   L +   +V+ +
Sbjct: 357 PNFTQTILGISAKEEKNIEILKNELVSYIE-ELKTSESTIITNQRHQEALQKSLLSVQKV 415

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E A  N      +++A  LR A   LG+I+G    +++L  IF KFCIGK
Sbjct: 416 EEAITNR--ISTELLAYELRAAMEYLGEISGEFTNDEVLGNIFGKFCIGK 463


>gi|259502137|ref|ZP_05745039.1| tRNA modification GTPase TrmE [Lactobacillus antri DSM 16041]
 gi|259169950|gb|EEW54445.1| tRNA modification GTPase TrmE [Lactobacillus antri DSM 16041]
          Length = 463

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 146/473 (30%), Positives = 251/473 (53%), Gaps = 46/473 (9%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD-- 57
           N E +TI A+ST      ISIIR+SGP    V + + +  K   R AS    +G  +D  
Sbjct: 3   NSENDTIAAISTPVGEGGISIIRISGPDAVAVAKQLYRGSKDLARVASHTINYGHIVDPE 62

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G  +D+ ++ V  +P ++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 63  TGTEVDEVMVSVMRAPHTYTCEDVIEINCHGGLLATNRILQ-LVLSYGARMAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL ++E++ DLI ++T+   ++++  + G+LS L  +    +  + + +E ++
Sbjct: 122 AFLNGRIDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRRLRKDILDVLAQVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  ++K +    + ++  I + +   K G+++R G    I+G  N GKSSL 
Sbjct: 182 DYPEYDAVEEMTTKMLKEKAVDIRQRIQALLKTAKQGKVLREGLATAIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF--- 293
           N L  +D AIVTD+ GTTRDV+   ++++G  +K+ DTAGIR+TDD VEK G++R+    
Sbjct: 242 NTLLHEDKAIVTDVAGTTRDVIEEYVNVDGVPLKLIDTAGIRDTDDTVEKIGVERSKKAL 301

Query: 294 ---------------LEVENADLILLL---KEINSKKEISFPKNIDFIFIGTKSDLYSTY 335
                          L  E+ +L+ +    + I    +   P+ +D       ++L    
Sbjct: 302 DAADLILLLIDSSAPLTAEDRELLTVTQGKQRIVILNKTDLPRQVDL------AELKQLT 355

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMA 393
             +     S    EG+++L  +I  +  N+  +   S  + ++ RH+  L Q       A
Sbjct: 356 AGDTVIETSIVNHEGMDQLGQRISKMFFNEGIESSQSNVMVTNARHIGLLHQA-----NA 410

Query: 394 SLNEK----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LN+     D G+  D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 411 ALNDVLKGIDDGMPVDLVQIDMTRCWDLLGEITGDSYQDELLDQLFSQFCLGK 463


>gi|85102270|ref|XP_961305.1| hypothetical protein NCU04149 [Neurospora crassa OR74A]
 gi|16944409|emb|CAC28756.2| related to GTPase MSS1, mitochondrial [Neurospora crassa]
 gi|28922848|gb|EAA32069.1| hypothetical protein NCU04149 [Neurospora crassa OR74A]
          Length = 530

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 170/533 (31%), Positives = 253/533 (47%), Gaps = 115/533 (21%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-----GLD---------GRILDK 63
           ++++ RL       V   +C  K  P PR A++R        G D           +LD 
Sbjct: 2   SLAVGRLPLTPSLGVYNSLCPTKLIPKPRYAAVRTLTEPTEPGNDVSSPSAANANNVLDT 61

Query: 64  -GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFE 119
             L++ FP P++ TGED  E HVHGG A V  +L  + K  +   +R A  GEF++RAF 
Sbjct: 62  DALVLYFPGPKTVTGEDVLELHVHGGPATVKAVLSAIPKSTSSSTIRYAEQGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N ++DL + E+L D +S+ETE QRR ++ G SG L   Y  W ++L   R  IEA +DFS
Sbjct: 122 NNRLDLAQVEALGDTLSAETEQQRRAAIRGTSGVLGKTYESWREQLLLARGEIEALIDFS 181

Query: 180 EEEDVQNF--SSKEVLNDILFLKNDISSHISQGKLG----EIIRNGYKIVILGHSNAGKS 233
           E+   Q+F  S  E+L ++  L  +I   I   +LG    E++RNG +I +LG  N GKS
Sbjct: 182 ED---QHFDESPTELLRNVTRLVKEILHSIKLHELGSQRSELLRNGIRIALLGPPNVGKS 238

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---------- 283
           SL N +  ++ +IV+   GTTRD++   LD+ GYL   +DTAGIR    +          
Sbjct: 239 SLMNLIVGREASIVSSEAGTTRDIVEASLDIRGYLCSFADTAGIRTRSSLLPAEEKEASI 298

Query: 284 --VEKEGIKRTFLEVENADLILLLKEIN-------------------------------S 310
             +E+EGI+R   +  ++D+I++L  +                                +
Sbjct: 299 GKIEEEGIRRARQKALDSDVIIVLASVEPHPNGVEGYRLNYDLSTLDLASSAPESLLVIN 358

Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-------LISSFTGE----GLEEL----I 355
           K E   P  +  +    K+D+ ST   E          LIS  T E    G+++     I
Sbjct: 359 KSETVPPSVLAQLIQSFKTDVLSTALPEDSPLRSQDPILISCRTAEQRSGGVDDTDPGKI 418

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYH--------LSQTVRYLE--MASLN--------- 396
           + + S LS+ F +L  +IP    HL          L Q    LE  MA  N         
Sbjct: 419 HHLISRLSSSFAEL-TAIPQDMEHLLGVTARQNELLGQCRDALEDFMAEANPNPNPAIGE 477

Query: 397 ------EKDCGLDIIAENLRLASVSLGKITG---CVDVEQLLDIIFSKFCIGK 440
                 E +  + + AE+LR+A+  L  ITG     DVE++L +IF KFC+GK
Sbjct: 478 GGITGEEVEADIVLAAEHLRVAAGRLAAITGKGEAGDVEEVLGVIFEKFCVGK 530


>gi|317472412|ref|ZP_07931737.1| tRNA modification GTPase TrmE [Anaerostipes sp. 3_2_56FAA]
 gi|316900132|gb|EFV22121.1| tRNA modification GTPase TrmE [Anaerostipes sp. 3_2_56FAA]
          Length = 457

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 152/458 (33%), Positives = 246/458 (53%), Gaps = 27/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG---LDGRI 60
           +TI A++T    S I IIR+SGP    +    F  K++K   + A+    +G    DG+ 
Sbjct: 4   DTIAAIATPLSSSGIGIIRISGPEAIDIASEVFRPKREKDIKKAATYTAHYGHAVKDGKD 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ +L++   P S+T ED AE + HGG+ V+  IL  + +    R A PGEF++RAF N
Sbjct: 64  IDECILLIMKGPHSYTAEDVAEINCHGGVVVMKKILSCIIE-AGARPAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL  AE++ DLI S+ E     S++ + G LS        ++ H  +FIE+ LD  E
Sbjct: 123 GRIDLSRAEAVMDLIHSKNEFAMETSLKQLKGSLSEKIRSLRKEIVHSVAFIESALDDPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              V  FS +++   +   ++DI  ++     G I++ G    I+G  NAGKSS+ N L 
Sbjct: 183 HYSVDGFS-EQLKVQVEHARDDIQKYLDSSDNGRILKEGIHTAIVGKPNAGKSSILNVLL 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            K+ AIVTDI GTTRD L   + + G  + + DTAGIR+TDD+VEK G+ +    V  AD
Sbjct: 242 GKERAIVTDIAGTTRDTLEESIQINGIPLNVIDTAGIRDTDDVVEKIGVDKARDSVIKAD 301

Query: 301 LILLLKEIN---SKKEISFPKNID---FIFIGTKSDLYSTYTEE------YDHL--ISSF 346
           L+L + + +   +K++    K ++    I +  KSDL +  +E       + ++  +S+ 
Sbjct: 302 LVLYVVDTSVPLTKEDEEIMKLLNGKQVIVLLNKSDLETKVSESEFLDRGFQNIVPVSAK 361

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402
           +  GLE+L  +I  +  N   ++ F+     ++ RH   L+     L++   + +D    
Sbjct: 362 SLYGLEDLYERINDLFFN--GRVSFNDEVYITNMRHKKALANAKDSLDLVLKSIEDRMPE 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  + +L  A   LG I G    E L++ IF++FC+GK
Sbjct: 420 DFFSIDLMDAYEELGYIIGESVGEDLVNEIFAEFCMGK 457


>gi|217966557|ref|YP_002352063.1| tRNA modification GTPase TrmE [Dictyoglomus turgidum DSM 6724]
 gi|217335656|gb|ACK41449.1| tRNA modification GTPase TrmE [Dictyoglomus turgidum DSM 6724]
          Length = 455

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 153/459 (33%), Positives = 262/459 (57%), Gaps = 28/459 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG---LDGR 59
           K+ I A++T    SAI +IRLSGP+   + +  F  ++ K   + +S    +G       
Sbjct: 2   KDDIVAIATPLGFSAIGVIRLSGPNVINIVKRVFSPRRNKDLEKVSSHTLHYGNIIYKDE 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L+ ++ +P S+TGE+  E   HG   ++  IL+ L +    R+A  GEF++RAF 
Sbjct: 62  IIDEVLVAIYKAPNSYTGENMVEIFTHGSPIILEEILKILVE-EGARIAERGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGKIDLL+AES+ ++I +E++   + ++  + GE+S    +   K+ H+R ++EA +DF 
Sbjct: 121 NGKIDLLQAESINEIIRAESKTALKRALSKLKGEVSKSLRELKSKVEHLRIYLEASMDFP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  DV+    ++ L  +  +K ++S  + + + G+ I+ GY+++++G  N GKSSLFNAL
Sbjct: 181 E--DVEEREREDWLRRLEEIKREVSYLLEKAERGDWIKGGYRVILVGRPNVGKSSLFNAL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            K+D AIVT IPGTTRD +  +L L  G+LVKI DTAG+    DI++K G+++T   +E 
Sbjct: 239 MKEDRAIVTPIPGTTRDYIEGELYLSSGHLVKIYDTAGLGIPKDILDKMGMEKTEKILEK 298

Query: 299 ADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHL-I 343
           ++LIL +         +EIN  ++I   +N + I +  K DL      S ++E+ + + +
Sbjct: 299 SNLILFVVDGSGEISEEEINLFEKIRSYQNKEIILVINKVDLPQKVELSVFSEDIEKIFV 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCG 401
           S+  G G+E+L   I+  +S+  ++L   I  +  H   L +  ++ E  ++ L      
Sbjct: 359 SAKEGIGIEDLEKAIERHISS--QELEDGIFLNVYHREKLKEIYQFCEEGISVLINLPQS 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LDI+ + L     + G+I G      + D IF+ FC+GK
Sbjct: 417 LDILGDILYDMEKAFGEILGEEVSLDIADKIFANFCVGK 455


>gi|163791744|ref|ZP_02186131.1| tRNA modification GTPase [Carnobacterium sp. AT7]
 gi|159872986|gb|EDP67103.1| tRNA modification GTPase [Carnobacterium sp. AT7]
          Length = 462

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 150/463 (32%), Positives = 244/463 (52%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG---- 55
           M  E ETI A+ST     AI I+RLSG    ++ + + +   K    + S    +G    
Sbjct: 1   MTLEFETIAAISTPPGEGAIGIVRLSGDQAIEIADRVYRSGSKALAEQKSHTIHYGHIEN 60

Query: 56  -LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                 +D+ ++ V   P++FT ED  E + HGGI  VN +L+ + +    RLA PGEF+
Sbjct: 61  PKTNETIDEVMVSVMREPKTFTREDVVEINCHGGITSVNQVLQCVLQ-NGARLAEPGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG+IDL +AE++ DLI ++T+    ++++ + G LS L       +    + +E 
Sbjct: 120 KRAFLNGRIDLSQAEAVMDLIRAKTDRAMHVALKQLDGNLSHLIRNLRMDILDTLAQVEV 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  +SK ++     +K  I   ++    G+I+R G    I+G  N GKSS
Sbjct: 180 NIDYPEYDDVEEMTSKLLIEKAKLVKASIQQLLATASQGKILREGLATAIIGRPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIVTDI GTTRDV+   + + G  +K+ DTAGIRET+DI+E+ G++R+  
Sbjct: 240 LLNYLLDEEKAIVTDIAGTTRDVIEEYISVRGVPLKLIDTAGIRETEDIIERIGVERSRQ 299

Query: 295 EVENADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI---- 343
            + +ADL+LL+        I  K  I        I I  K DL +     E + L+    
Sbjct: 300 ALSDADLVLLVFNQSEPLTIEDKALIEATNQHRRIVILNKMDLPNKLDLAELETLVEPES 359

Query: 344 ----SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397
               S  +  G++ L   I ++  + +  +   +  S+ RH+  L+     L E+ S  E
Sbjct: 360 IVKTSILSKSGIDVLEKNIANLFFTGQTGERDATYVSNVRHIALLNDAEEALDEVISGVE 419

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D+I  ++      LG+ITG    ++LL  +FS+FC+GK
Sbjct: 420 MGMPVDLIQIDMTRCWDLLGEITGDSVQDELLTQLFSQFCLGK 462


>gi|323694902|ref|ZP_08109052.1| tRNA modification GTPase TrmE [Clostridium symbiosum WAL-14673]
 gi|323500992|gb|EGB16904.1| tRNA modification GTPase TrmE [Clostridium symbiosum WAL-14673]
          Length = 462

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 242/460 (52%), Gaps = 30/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFG--LDG-R 59
           +TI A++T    S I IIR+SG   F + + I +   K+K    + +    +G   DG  
Sbjct: 8   DTIAAIATALTNSGIGIIRVSGNEAFDIVDRIFRPKNKRKKLKEEKTYTVHYGHIQDGDE 67

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L IV   P S+T ED+ E   HGG+ V+  ILE + K    R+A PGEF++RAF 
Sbjct: 68  IIDEVLAIVMRGPHSYTAEDTVEIDCHGGVLVMKKILETVIKY-GARMAEPGEFTKRAFL 126

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+S+     + S+  +SG +S    +  +KL    +FIE+ LD  
Sbjct: 127 NGRIDLSQAEAVIDVINSKNNYALKSSVSQLSGSMSKKVKELREKLLFEIAFIESALDDP 186

Query: 180 EEEDVQNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           E   +  +  K    +ND   ++ +++  IS    G ++  G + VILG  NAGKSSL N
Sbjct: 187 EHISLDGYPEKLKVTVND---MQEELNRAISTFDSGRVLSEGIRTVILGKPNAGKSSLMN 243

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ AIVTDI GTTRD L  ++ L G  + I DTAGIRET+D+VEK G+ +     +
Sbjct: 244 VLVGEERAIVTDIAGTTRDTLEENIRLHGISLNIVDTAGIRETEDVVEKIGVDKARANAD 303

Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
           +ADL++               ++  I  +K I      D   + T  ++     +E    
Sbjct: 304 DADLLIYVVDGSCPLDENDYQIMNLIEGRKSIVLLNKTDLEMVLTPEEIKEKTGKEV-VA 362

Query: 343 ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           +S+    G++ L  KIK + LS +       + ++ RH   +S+ ++ L +   + E   
Sbjct: 363 VSAKEQRGIDLLEEKIKELFLSGEIDFNDEVMITNVRHKTAMSEALKSLSLVKQSIEDQM 422

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D  + +L  A   LG I G    + L++ IF+KFC+GK
Sbjct: 423 PEDFYSIDLMNAYEQLGTIIGESLEDDLVNEIFNKFCMGK 462


>gi|266620968|ref|ZP_06113903.1| tRNA modification GTPase TrmE [Clostridium hathewayi DSM 13479]
 gi|288867390|gb|EFC99688.1| tRNA modification GTPase TrmE [Clostridium hathewayi DSM 13479]
          Length = 459

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 155/460 (33%), Positives = 249/460 (54%), Gaps = 31/460 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS------LRYFFGLDG-R 59
           TI A++T    S I I+R+SG   F + + I + K    RK S      + Y +  DG  
Sbjct: 5   TIAAIATAMSSSGIGIVRISGDEAFTIIDKIYRVKGKNSRKLSDAPSHTIHYGYIADGDE 64

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L+++   P+SFT ED+ E   HGG+ +   ILE + K    R A PGEF++RAF 
Sbjct: 65  IIDEVLVMLMRGPKSFTAEDTVEIDCHGGVLITKKILETVLKY-GARPAEPGEFTKRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+S+ +   + S+  + G +S+   +  +++ +  +FIE+ LD  
Sbjct: 124 NGRIDLAQAEAVIDVINSKNDYALKASVSQLDGAVSNAVKKLREQIIYQIAFIESALDDP 183

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +  +  + +L+ I  LK  +   I     G ++  G K VILG  NAGKSSL N L
Sbjct: 184 EHISLDGYG-ESLLSVIQGLKEGLWKLIRSADNGRVMTEGIKTVILGKPNAGKSSLLNVL 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTD+ GTTRD L   + LE   + + DTAGIR+TDDIVEK G+++     + A
Sbjct: 243 VGEERAIVTDVAGTTRDTLEETIRLEDITLNVIDTAGIRDTDDIVEKIGVEKARNAADAA 302

Query: 300 DLILLLK------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-----DHLISSFTG 348
           DLI+ +       + N ++ + F K+   + +  KSDL    T +       H + + + 
Sbjct: 303 DLIIYVVDGSCPLDENDEEILKFIKDRKAVVLLNKSDLTMEITADMLASRTAHRVIAISA 362

Query: 349 E---GLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +   G+E L ++IK++  +   ++ F+     ++ RH   L Q    LEM   + ++ G+
Sbjct: 363 KERVGIELLEDEIKTMFYH--GEIDFNDEVTITNVRHKNALEQAYSSLEMVEQSIQN-GM 419

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D  + +L  A   LG I G    + L+  IFSKFC+GK
Sbjct: 420 PEDFYSIDLMDAYEQLGLIIGEAVEDDLVHEIFSKFCMGK 459


>gi|332878607|ref|ZP_08446327.1| tRNA modification GTPase TrmE [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332683508|gb|EGJ56385.1| tRNA modification GTPase TrmE [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 469

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 151/469 (32%), Positives = 250/469 (53%), Gaps = 35/469 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL---D 57
           +  +TI A++T     AI +IRLSG     + + I K    KP    A+     G+   +
Sbjct: 5   YTSDTIVALATATGAGAIGVIRLSGNEAIAIADTIFKAHHAKPLAEVATHTVHLGMIEAE 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE-LAKMPNLRLANPGEFSRR 116
           G  +D+ L  VF    S+TGE   EF  HG   ++  +++  LAK    RLA  GEF++R
Sbjct: 65  GHQIDECLATVFKGQRSYTGEPVVEFSCHGSSYIIAQVMKSCLAK--GARLAEAGEFTKR 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGK+ L +AE++ADLI+S++E   R++++ M G  +S       +L +  S IE +L
Sbjct: 123 AFLNGKMALSQAEAVADLIASDSEASHRVALQQMRGGFASEIETLRGELLNFASLIELEL 182

Query: 177 DFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           DF+EE DV  F+ ++    +L  +K  I+  ++   +G +++NG  + I+G  NAGKS+L
Sbjct: 183 DFAEE-DVA-FADRDSFKALLSHIKQTITQLVASFSVGNVLKNGMPVAIVGKPNAGKSTL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  ++ AIV+DI GTTRD +   L + G   +  DTAGIRET D +E  G++R   +
Sbjct: 241 LNALLNEERAIVSDIAGTTRDTIEEVLHIGGIAFRFIDTAGIRETHDAIEAIGVQRAKEK 300

Query: 296 VENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYS----TYTEEYDHL- 342
           +  A +++ L         ++ +  +  + + + F+ +  K DLY+    T+ E+  H  
Sbjct: 301 IAKAQIVIFLYNQYDDTVADVVAFVKEHYREGVFFVLVHNKIDLYTEGVHTFDEQVRHAL 360

Query: 343 ----ISSFTGEGLEEL-INKIKSILSNKFKKL-----PFSIPSHKRHLYHLSQTVRYLEM 392
               I+  T    E + + ++K  L+N  +++       ++ ++ RH   L Q +  +E 
Sbjct: 361 VGYNITLLTLSAKERVYLEELKQSLTNYAQQINKAAAGNTVVTNLRHYEALQQALTAVER 420

Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                      D++A ++R     LG ITG V  +++L  IFSKFCIGK
Sbjct: 421 VEEGLASGLSADLLAIDIRETLYYLGSITGAVSNDEVLGNIFSKFCIGK 469


>gi|313124784|ref|YP_004035043.1| tRNA modification GTPase mnme [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312281347|gb|ADQ62066.1| tRNA modification GTPase mnmE [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 461

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 259/465 (55%), Gaps = 38/465 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST      ISI+R+SG     +   + K K  +  P   ++ Y   +D   G
Sbjct: 7   EFDTIAAISTPLGEGGISIVRVSGEDAVAIVNRLFKGKDLEKVPSH-TINYGHIVDPATG 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ +  V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RAF
Sbjct: 66  QVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQ-LLLANGARMADPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174
            NG+IDL +AES+ D+I ++T+  R+++++ +SG    E+ +L  + +D L ++    E 
Sbjct: 125 VNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRALRQEILDVLANV----EV 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E  D +  +++++L     +   I   +   + G+I+RNG K  I+G  N GKSS
Sbjct: 181 NIDYPEY-DEEEVTAQKMLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  T+D VEK G++R+  
Sbjct: 240 LLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIGVERSKK 299

Query: 295 EVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHL 342
            +  ADLILLL    +E+    ++ +        I +  K+DL    T      E    +
Sbjct: 300 AIAQADLILLLLDGSQELTEEDRRLLELTAGKKRIIVLNKTDLGQKLTAAEIAKESGSEV 359

Query: 343 ISS--FTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYL-EMASL 395
           IS+     E L+EL   IK +    FK +  S    + +++R    L++  + L ++AS 
Sbjct: 360 ISTSIMMKENLDELEALIKKLF---FKGIENSNDQVLVTNQRQAGLLAKAKQQLADVASG 416

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            E    +D++  +   A  SLG+ITG    ++L++ +FS+FC+GK
Sbjct: 417 LEAGMPVDLVQIDFTGAWESLGEITGDSAPDELINDLFSQFCLGK 461


>gi|325283727|ref|YP_004256268.1| tRNA modification GTPase mnmE [Deinococcus proteolyticus MRP]
 gi|324315536|gb|ADY26651.1| tRNA modification GTPase mnmE [Deinococcus proteolyticus MRP]
          Length = 443

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 192/356 (53%), Gaps = 12/356 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61
           +TI AV+T    + + ++R+SGP    + + +   ++        R+ FG      G +L
Sbjct: 12  DTIAAVATAPGHAGVGVVRVSGPQALHIADALFSGRRRPSSTPGGRFLFGRLLAEGGEVL 71

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+GL +VF +P S+TGED AEF  HG  AV+  +L     +   R A PGEF+ RA+  G
Sbjct: 72  DEGLCLVFRAPHSYTGEDVAEFQTHGSPAVLGEVLTRALDL-GARPARPGEFTLRAYLAG 130

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++ +L+ S TE  RR +  G+SG L          LT   S I A LD+ EE
Sbjct: 131 RLDLAQAEAVLNLVESSTETARRQATLGLSGALGERVDAIARDLTLTLSSIAALLDYPEE 190

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
                   +E    +     ++ + +   + G +   G +I ++G  NAGKSSL NAL  
Sbjct: 191 ----GVPEEERQVPLARAAAELEALLGTARAGRVANQGARIALIGAPNAGKSSLLNALLG 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            + +IVT + GTTRD L   L L G  V + DTAG+R+T+D+VE  G+++     + AD+
Sbjct: 247 YERSIVTPLAGTTRDYLEAGLSLAGVPVTLVDTAGLRDTEDVVEAAGVRQAHALAQGADV 306

Query: 302 ILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           +L L + +  +E   ++ P     I + TK+DL + + +     +S+ TG+GL +L
Sbjct: 307 VLTLSDGSQPREPLPLALPAGARAIHLRTKADLPAAWDDPAYLPVSAATGQGLPQL 362


>gi|300812005|ref|ZP_07092461.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497031|gb|EFK32097.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 461

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 259/465 (55%), Gaps = 38/465 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST      ISI+R+SG     +   + K K  +  P   ++ Y   +D   G
Sbjct: 7   EFDTIAAISTPLGEGGISIVRVSGEDAVAIVNRLFKGKDLEKVPSH-TINYGHIVDPATG 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ +  V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RAF
Sbjct: 66  QVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQ-LLLANGARMADPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174
            NG+IDL +AES+ D+I ++T+  R+++++ +SG    E+ +L  + +D L ++    E 
Sbjct: 125 VNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRALRQEILDVLANV----EV 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E  D +  +++++L     +   I   +   + G+I+RNG K  I+G  N GKSS
Sbjct: 181 NIDYPEY-DEEEVTAQKMLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  T+D VEK G++R+  
Sbjct: 240 LLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIGVERSKK 299

Query: 295 EVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHL 342
            +  ADLILLL    +E+    ++ +        I +  K+DL    T      E    +
Sbjct: 300 AIAQADLILLLLDGSQELTEEDRRLLELTAGKKRIIVLNKTDLGQKLTAAEIAKESGSEV 359

Query: 343 ISS--FTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYL-EMASL 395
           IS+     E L+EL   IK +    FK +  S    + +++R    L++  + L ++AS 
Sbjct: 360 ISTSIMMKENLDELEALIKKLF---FKGIENSNDQVLVTNQRQAGLLAKAKQQLADVASG 416

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            E    +D++  +   A  SLG+ITG    ++L++ +FS+FC+GK
Sbjct: 417 LESGMPVDLVQIDFTGAWESLGEITGDSAPDELINDLFSQFCLGK 461


>gi|229551112|ref|ZP_04439837.1| tRNA modification GTP-binding protein TrmE [Lactobacillus rhamnosus
           LMS2-1]
 gi|258541097|ref|YP_003175596.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus Lc 705]
 gi|229315504|gb|EEN81477.1| tRNA modification GTP-binding protein TrmE [Lactobacillus rhamnosus
           LMS2-1]
 gi|257152773|emb|CAR91745.1| tRNA modification GTPase MnmE [Lactobacillus rhamnosus Lc 705]
          Length = 462

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 246/457 (53%), Gaps = 25/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GRIL 61
           +TI A+ST     AISI+RLSG +       + K K     K+ ++ Y   +D   G ++
Sbjct: 9   DTIAAISTPPGEGAISIVRLSGETAVATANKVFKGKDLTQVKSHTIHYGHIVDPETGDLI 68

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ ++ V  +P++FT ED  E + HGGI   N IL+ L      R+A PGEF++RAF NG
Sbjct: 69  DEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLG-EGARMAEPGEFTKRAFLNG 127

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL EAES+ DLI ++T+   ++++  + G L  L  Q   ++  + + +E ++D+ E 
Sbjct: 128 RIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHHLIKQLRQEILEVLAQVEVNIDYPEY 187

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D    ++K +L     +K  I   ++    G+++R G    I+G  N GKSSL N +  
Sbjct: 188 -DTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRPNVGKSSLLNHMLH 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTD+ GTTRDVL   +++ G  +K+ DTAGI +T D VEK G++R+   +  ADL
Sbjct: 247 EEKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVERSRQAITQADL 306

Query: 302 ILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLISSF-- 346
           ILL+ +         K+ ++   +   I +  K DL +           + D +I +   
Sbjct: 307 ILLVLDQSEPLTTEDKQLLAATADKKRIIVLNKQDLPARLDTAALLQLVDADEIIKTAIP 366

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLE--MASLNEKDCGLD 403
           T +G++ L  +I  +     +    ++  S+ R +  L Q  + L+  MA ++     +D
Sbjct: 367 TSDGMDALDERIAKLFFGGIENSQGTVMVSNARQIGLLRQASKSLDAVMAGIH-AGMPID 425

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++  A   LG+ITG    ++L+  +FS+FC+GK
Sbjct: 426 LVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462


>gi|311747167|ref|ZP_07720952.1| tRNA modification GTPase TrmE [Algoriphagus sp. PR1]
 gi|126578876|gb|EAZ83040.1| tRNA modification GTPase TrmE [Algoriphagus sp. PR1]
          Length = 460

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 157/455 (34%), Positives = 247/455 (54%), Gaps = 24/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--DG-RILD 62
           +TI A++T     AI++IRLSG    ++   +   K    ++ S    FG   DG +++D
Sbjct: 10  DTIIALATPQGVGAIAVIRLSGQDAIKLTNEVFFGKN-LEKQDSHTIHFGTIRDGEKVID 68

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+ +F +P+SFT E+  E   HG   ++N +++   K   +R A  GEF++RAF NG+
Sbjct: 69  EVLVSLFIAPKSFTKENVVEISTHGSSYIINQVIKLFLK-KGVRPAKAGEFTQRAFLNGQ 127

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
            DL +AE++ADLI +++E     ++  M G  S       +KL H  S IE +LDF EE 
Sbjct: 128 FDLAQAEAVADLIHADSEASHSAALSQMRGGFSGEIQVLREKLIHFASMIELELDFGEE- 186

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV+  S  E+   +  L   +   I    LG +I+NG   VI G  NAGKS+L NAL  +
Sbjct: 187 DVEFASRTELQELVERLLRVVEELILSFDLGNVIKNGVPTVIAGKPNAGKSTLLNALLNE 246

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD++  ++++ G + +  DTAG+RET D +E  G+ RT  +++ A LI
Sbjct: 247 EKAIVSDIAGTTRDLIEDEINIGGVIFRFIDTAGLRETTDTIEAIGVSRTQEKMKTASLI 306

Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSD-----LYSTYTEEYDH--LISSFT 347
           L L ++     +   ++++        F+ I  K D     L S    +Y     IS+  
Sbjct: 307 LYLFDLGDTDLVEINRDVNKLENLGVPFLKIANKLDKANPELVSELKSKYPDTIFISAGN 366

Query: 348 GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGLDII 405
            E LE L  KI  +++ +KFK    +I ++ RH   L +T    L++    +     D +
Sbjct: 367 KENLEGLKVKILELVNLDKFKT-GNTIVTNVRHYDSLIKTRDSLLDILRGIDDQITNDFV 425

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A ++R +   LG+ITG +  + LL  IFSKFCIGK
Sbjct: 426 AMDIRRSLHYLGEITGEITTDDLLANIFSKFCIGK 460


>gi|300868767|ref|ZP_07113378.1| tRNA modification GTPase mnmE [Oscillatoria sp. PCC 6506]
 gi|300333328|emb|CBN58570.1| tRNA modification GTPase mnmE [Oscillatoria sp. PCC 6506]
          Length = 464

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 153/462 (33%), Positives = 243/462 (52%), Gaps = 33/462 (7%)

Query: 6   ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56
           +TI A++T  +P   ++ I+R+SG     +    F     + +    S R  +G      
Sbjct: 9   QTIAAIATAIVPQQGSVGIVRVSGDEAIAIAHTLFHAPGNQIWE---SHRILYGYIRHPQ 65

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA  GEF+ R
Sbjct: 66  SQQLVDEALLLIMKAPRSYTREDVVEFHCHGGIMAVQQVLQ-LCLESGARLAQAGEFTLR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AES+ADL+ + +    + ++ G+ G+L++   +       + + IEA +
Sbjct: 125 AFLNGRLDLSQAESVADLVGARSPAAAQAALAGLQGKLATPIRELRATCLDVLAEIEARI 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF  EED+       +   I  +  ++S  ++    GE++R+G K+ I+G  N GKSSL 
Sbjct: 185 DF--EEDLPPLDEGAIALQIQHILAELSRILATADSGELLRSGLKVAIVGRPNVGKSSLL 242

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NA ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIRET+D VEK G+ R+    
Sbjct: 243 NAWSRCDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETEDRVEKIGVARSRQAA 302

Query: 297 ENADLILLLKEINS-----KKEI-SFPKNIDFIFIGTKSDLYS----------TYTEEYD 340
           E+ADL+LL  +  +      +EI    K+   I I  K DL S              +  
Sbjct: 303 ESADLVLLAIDAAAGWTEGDREIYQQVKHRPVILIVNKVDLVSEKDLEILQSKIENPQAK 362

Query: 341 HLISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM-ASLNEK 398
            L ++   +G+E+L   I  ++ +   +     +  ++R    L++    LE  A     
Sbjct: 363 VLAAAAYNQGIEDLEQAILTAVNAGDLQAGNLDLAINQRQAAALTRAKISLEQCADTINN 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 423 QLPLDFWTIDLRGAIQALGEITGEGVTESVLDRIFSRFCIGK 464


>gi|116496320|ref|YP_808054.1| tRNA modification GTPase TrmE [Lactobacillus casei ATCC 334]
 gi|191639864|ref|YP_001989030.1| tRNA modification GTPase TrmE [Lactobacillus casei BL23]
 gi|227533513|ref|ZP_03963562.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239630797|ref|ZP_04673828.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301067924|ref|YP_003789947.1| tRNA modification GTPase, TrmE [Lactobacillus casei str. Zhang]
 gi|122262283|sp|Q033L0|MNME_LACC3 RecName: Full=tRNA modification GTPase mnmE
 gi|116106470|gb|ABJ71612.1| tRNA modification GTPase trmE [Lactobacillus casei ATCC 334]
 gi|190714166|emb|CAQ68172.1| tRNA modification GTPase trmE [Lactobacillus casei BL23]
 gi|227188842|gb|EEI68909.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239527080|gb|EEQ66081.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300440331|gb|ADK20097.1| tRNA modification GTPase, TrmE [Lactobacillus casei str. Zhang]
 gi|327383978|gb|AEA55454.1| TRNA modification GTPase TrmE:Small GTP-binding protein
           [Lactobacillus casei LC2W]
 gi|327387162|gb|AEA58636.1| TRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Lactobacillus casei BD-II]
          Length = 462

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 147/457 (32%), Positives = 246/457 (53%), Gaps = 25/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GRIL 61
           +TI A+ST     AISI+RLSG +       + K K     K+ ++ Y   +D   G ++
Sbjct: 9   DTIAAISTPPGEGAISIVRLSGETAVATANQVFKGKDLSQVKSHTIHYGHIVDPESGELI 68

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ ++ V  +P++FT ED  E + HGGI   N IL+ L      R+A PGEF++RAF NG
Sbjct: 69  DEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLG-EGARMAEPGEFTKRAFLNG 127

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL EAES+ DLI ++T+   ++++  + G L +L  +   ++  + + +E ++D+ E 
Sbjct: 128 RIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHTLIKRLRQEILEVLAQVEVNIDYPEY 187

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D    ++K +L     ++  IS+ +S    G+++R G    I+G  N GKSSL N +  
Sbjct: 188 -DTDEMTTKMLLEKAQTVQKAISNLLSTASQGKVLREGLATAIVGRPNVGKSSLLNHMLH 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVTD+ GTTRDVL   +++ G  +K+ DTAGI +T D VEK G++R+   +  ADL
Sbjct: 247 EDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVERSRQAITQADL 306

Query: 302 ILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY-------DHLISSF-- 346
           ILL+ + +       ++ I    N   I +  K DL +             D +I +   
Sbjct: 307 ILLVLDQSEPLTDEDEQLIQATANKKRIIVLNKQDLPAQLDTTALLKLVSPDEIIKTAIP 366

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGL--D 403
           T  G++ L  +I  +     +    ++  S+ R +  L Q  + L+ A +     G+  D
Sbjct: 367 TSAGMDALDERIAKLFFGGIENSQTTVMVSNARQIGLLRQANKSLD-AVIAGIHAGMPID 425

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++  A   LG+ITG    ++L+  +FS+FC+GK
Sbjct: 426 LVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462


>gi|323486760|ref|ZP_08092079.1| hypothetical protein HMPREF9474_03830 [Clostridium symbiosum
           WAL-14163]
 gi|323399899|gb|EGA92278.1| hypothetical protein HMPREF9474_03830 [Clostridium symbiosum
           WAL-14163]
          Length = 462

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 242/460 (52%), Gaps = 30/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFG--LDG-R 59
           +TI A++T    S I IIR+SG   F + + I +   K+K    + +    +G   DG  
Sbjct: 8   DTIAAIATALTNSGIGIIRVSGNEAFDIVDRIFRPKNKRKKLKEEKTYTVHYGHIQDGDE 67

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L I+   P S+T ED+ E   HGG+ V+  ILE + K    R+A PGEF++RAF 
Sbjct: 68  IIDEVLAIIMRGPHSYTAEDTVEIDCHGGVLVMKKILETVIKY-GARMAEPGEFTKRAFL 126

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+S+     + S+  +SG +S    +  +KL    +FIE+ LD  
Sbjct: 127 NGRIDLSQAEAVIDVINSKNNYALKSSVSQLSGSMSKKVKELREKLLFEIAFIESALDDP 186

Query: 180 EEEDVQNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           E   +  +  K    +ND   ++ +++  IS    G ++  G + VILG  NAGKSSL N
Sbjct: 187 EHISLDGYPEKLKVTVND---MQEELNRAISTFDSGRVLSEGIRTVILGKPNAGKSSLMN 243

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ AIVTDI GTTRD L  ++ L G  + I DTAGIRET+D+VEK G+ +     +
Sbjct: 244 VLVGEERAIVTDIAGTTRDTLEENIRLHGISLNIVDTAGIRETEDVVEKIGVDKARANAD 303

Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
           +ADL++               ++  I  +K I      D   + T  ++     +E    
Sbjct: 304 DADLLIYVVDGSCPLDENDYQIMNLIEGRKSIVLLNKTDLEMVLTPEEIKEKTGKEV-VA 362

Query: 343 ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           +S+    G++ L  KIK + LS +       + ++ RH   +S+ ++ L +   + E   
Sbjct: 363 VSAKEQRGIDLLEEKIKELFLSGEIDFNDEVMITNVRHKTAMSEALKSLSLVKQSIEDQM 422

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D  + +L  A   LG I G    + L++ IF+KFC+GK
Sbjct: 423 PEDFYSIDLMNAYEQLGTIIGESLEDDLVNEIFNKFCMGK 462


>gi|39939233|ref|NP_950999.1| tRNA modification GTPase TrmE [Onion yellows phytoplasma OY-M]
 gi|81402190|sp|Q6YPI0|MNME_ONYPE RecName: Full=tRNA modification GTPase mnmE
 gi|39722342|dbj|BAD04832.1| tRNA modification GTPase [Onion yellows phytoplasma OY-M]
          Length = 460

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 153/466 (32%), Positives = 240/466 (51%), Gaps = 40/466 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR---YFFGLDGRILD 62
           +TI A+ST      +S+IR+SG +       I K K     K       +    +  ILD
Sbjct: 4   DTIAAISTPLGTGGVSVIRVSGNNSIAEINKIFKGKDLTKTKTHTITHGFILNKNQTILD 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+ VF +P SFTGE+  E + HGGI +   +LE +  + ++RLA PGEFS+RA+ NGK
Sbjct: 64  EVLISVFKTPNSFTGENVVEINAHGGILITQMVLERVLSL-DIRLAFPGEFSQRAYLNGK 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AES+ DLI +  E   +++  G+    S L     D++ ++ + IE ++D+ E +
Sbjct: 123 MDLIQAESIMDLIHATNENAIKIAHSGLQKYTSQLVTSLRDQILNLIAQIEVNIDYPEYD 182

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+   + +++  ++  L   + + ++       ++ G K +I+G  N GKSSL NA   +
Sbjct: 183 DIPQITQQKIALEVKSLIKQLENILNHSHKNRYLKEGIKTLIVGRPNVGKSSLLNAFLNE 242

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             AIV+DI GTTRD +    + +G  + + DTAGIR+TDD +EK GI RT   +  A+LI
Sbjct: 243 TKAIVSDISGTTRDFVEAYFNCQGITLHLIDTAGIRKTDDPIEKIGILRTEKMLLQAELI 302

Query: 303 LLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------------- 343
           LL+ + N+  +      +   KN   I IG K+DL S      D LI             
Sbjct: 303 LLVLDQNNHLQEEDIQLLQLTKNHPRIIIGNKADLKS------DKLISSLSNNSSQLAPQ 356

Query: 344 -----SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRY---LEMAS 394
                SS    G  EL   I K    N  +   F+  S+ RH+  +   +R    L+ A 
Sbjct: 357 EIISVSSLDKTGFLELQQTILKKFQLNDIQPKDFNYFSNARHINQIQIALRSFQDLQQAL 416

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L  +   +DI + +L  A  +LG+I G      L+  +FSKFC+GK
Sbjct: 417 L--QSMPIDIYSIDLTKAYQALGQIIGDNQENSLIKELFSKFCLGK 460


>gi|152993155|ref|YP_001358876.1| tRNA modification GTPase TrmE [Sulfurovum sp. NBC37-1]
 gi|205829171|sp|A6QAL0|MNME_SULNB RecName: Full=tRNA modification GTPase mnmE
 gi|151425016|dbj|BAF72519.1| tRNA modification GTPase TrmE [Sulfurovum sp. NBC37-1]
          Length = 450

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 243/449 (54%), Gaps = 17/449 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           + TI A++T    S+ISIIR+SG +   + + I   ++  PR A L   +     ++D+ 
Sbjct: 6   QNTIAAIATAYGVSSISIIRVSGNAALDIAKKISHLEEVKPRHAHLTSLYNSQNDLIDQA 65

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGE+  EF  HGG+ V   IL+ +     +RLA PGEFS+RAF NGKID
Sbjct: 66  IMIYFKAPFSFTGEEIVEFQCHGGMIVAQEILDTILSY-GIRLAEPGEFSKRAFFNGKID 124

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE+++ LI +++    ++  + M GEL     +  D L    ++ E  +D++EE D+
Sbjct: 125 LTEAEAISKLIEAKSVDAAKILAKQMKGELKYFVDESRDALLRSLAYSEVMIDYAEE-DI 183

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +   + ++  +  L   I   +        +  G+K+ I+G  N GKSSL NAL   D 
Sbjct: 184 PDDIMRSIVTQLDGLSEQIMKIVDASYRRRGLIEGFKVAIIGKPNVGKSSLLNALLSYDR 243

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+DI GTTRD +   + +  +++++ DTAGIRE++D +EK GI+R+   VE+AD+I+ 
Sbjct: 244 AIVSDIAGTTRDTIEEQVRIGSHIIRLVDTAGIRESEDTIEKIGIERSLSSVEDADIIIA 303

Query: 305 L----KEINSKKE-----ISFPKNIDFIFIGTKSDLY----STYTEEYDHLISSFTGEGL 351
           L    +E +S+ E     +   ++   I    KSDL           YD +  S   +G 
Sbjct: 304 LFDGSREFDSEDEKILAIVDALQDKHIIVAINKSDLEMKLDGDRINSYDPIEVS-AKKGF 362

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            +L  +++++L +  +     + S  R +  +++    +  A     +  L+  + +L+ 
Sbjct: 363 VKLTRQMEALLDSIGEGEELMLIS-ARQIEAVNRAKNAIAEAKEPLMNGELEFFSYHLQE 421

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  ++  I+   D E++LD +F +FC+GK
Sbjct: 422 AVKAISSISKPYDSEEILDKMFGEFCLGK 450


>gi|315022654|gb|EFT35679.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Riemerella
           anatipestifer RA-YM]
          Length = 490

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 160/470 (34%), Positives = 257/470 (54%), Gaps = 40/470 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR-I 60
           ++++TI A++T     AI IIR+SG +   +   I K K      + +L Y F + G  +
Sbjct: 29  NQQDTICALATANGVGAIGIIRVSGDNSINITNTIFKGKDLTKVDSHTLHYGFIVQGEEV 88

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ ++ +F +P+SFT EDS E   HG   +   IL+ L      R+A  GEFS RAF N
Sbjct: 89  IDEVMISIFKAPKSFTTEDSVEISFHGSPFIGKRILD-LLIANGCRMAKAGEFSMRAFLN 147

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ADLI+SE+E  R++++  + G +S+      + L +  S IE +LDF+E
Sbjct: 148 GRIDLSQAESIADLIASESEAARKVALNQLKGGISNEISILRNDLLNFTSLIELELDFAE 207

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV+     E+   +  LK+ +   +   + G  ++NG ++ I+G  NAGKS+L NAL 
Sbjct: 208 E-DVEFADRTELTQLLQKLKSKLGGLLESFQYGNAVKNGVQVAIIGKPNAGKSTLLNALL 266

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIV+DI GTTRD +   L + G+  +  DTAGIR+T D VE  G+++   ++  AD
Sbjct: 267 KEERAIVSDIAGTTRDTIEEVLHIGGHAFRFIDTAGIRDTADRVESIGVEKAKEKINTAD 326

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDL----------YSTYTEEYDH-------LI 343
           ++L L +I   K+ +  + I+FI    + DL           S  TE  D        L+
Sbjct: 327 ILLYLFDI---KDSTPNEIINFITSLERPDLKVILLQNKIDSSNETEINDFWKQLKEVLV 383

Query: 344 SSFTG----------EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ---TVRYL 390
            +FT           + +E L N++ S +  + K    +I +++RH   L +   +V+ +
Sbjct: 384 PNFTQTILGISAKEEKNIEILKNELVSYIE-ELKTSESTIITNQRHQEALQKSLLSVQKV 442

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E A  N      +++A  LR A   LG+I+G    +++L  IF KFCIGK
Sbjct: 443 EEAITNR--ISTELLAYELRAAMEYLGEISGEFTNDEVLGNIFGKFCIGK 490


>gi|237713435|ref|ZP_04543916.1| tRNA modification GTPase TrmE [Bacteroides sp. D1]
 gi|262407222|ref|ZP_06083770.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_22]
 gi|294647342|ref|ZP_06724935.1| tRNA modification GTPase TrmE [Bacteroides ovatus SD CC 2a]
 gi|294809037|ref|ZP_06767759.1| tRNA modification GTPase TrmE [Bacteroides xylanisolvens SD CC 1b]
 gi|229446417|gb|EEO52208.1| tRNA modification GTPase TrmE [Bacteroides sp. D1]
 gi|262354030|gb|EEZ03122.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_22]
 gi|292637301|gb|EFF55726.1| tRNA modification GTPase TrmE [Bacteroides ovatus SD CC 2a]
 gi|294443762|gb|EFG12507.1| tRNA modification GTPase TrmE [Bacteroides xylanisolvens SD CC 1b]
          Length = 465

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 250/468 (53%), Gaps = 37/468 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG--LDG- 58
           ++TI A++T A   AI  IR+SGP    +   I K  K       +      FG   DG 
Sbjct: 3   QDTICAIAT-AQGGAIGSIRVSGPEAISITGSIFKPAKTGKLLSEQKPYTLTFGRIYDGD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EIIDEVLISLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S    +  +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTELRNKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +      + S ++    +G  I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+D+ GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDVHGTTRDVIEDTINIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298

Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLYSTYTEE-YDHLISSFT 347
            A+++L ++  +N+  +I        P+      I +  K+DL     +E    L+  F 
Sbjct: 299 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENLLSLLKDFP 358

Query: 348 GEGLEEL-INKIKSILSNKFKKLPFS------------IPSHKRHLYHLSQTVRYLEMAS 394
            E  E + I+  +   +++ +K+               I ++ RH   L++ +  +    
Sbjct: 359 KESTESIFISAKQRENTSELQKMLIDAAHMPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 418

Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L+ +  G D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 419 NGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|104774816|ref|YP_619796.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514945|ref|YP_813851.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122274323|sp|Q047F9|MNME_LACDB RecName: Full=tRNA modification GTPase mnmE
 gi|123077174|sp|Q1G7Z4|MNME_LACDA RecName: Full=tRNA modification GTPase mnmE
 gi|103423897|emb|CAI98939.1| tRNA modification GTPase trmE [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116094260|gb|ABJ59413.1| tRNA modification GTPase trmE [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325126645|gb|ADY85975.1| Thiophene and furan oxidation protein [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 461

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 259/465 (55%), Gaps = 38/465 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST      ISI+R+SG     +   + K K  +  P   ++ Y   +D   G
Sbjct: 7   EFDTIAAISTPLGEGGISIVRVSGEDAVAIVNRLFKGKDLEKVPSH-TINYGHIVDPATG 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ +  V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RAF
Sbjct: 66  QVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQ-LLLANGARMADPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174
            NG+IDL +AES+ D+I ++T+  R+++++ +SG    E+ +L  + +D L ++    E 
Sbjct: 125 VNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRALRQEILDVLANV----EV 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E  D +  +++++L     +   I   +   + G+I+RNG K  I+G  N GKSS
Sbjct: 181 NIDYPEY-DEEEVTAQKLLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  T+D VEK G++R+  
Sbjct: 240 LLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIGVERSKK 299

Query: 295 EVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHL 342
            +  ADLILLL    +E+    ++ +        I +  K+DL    T      E    +
Sbjct: 300 AIAQADLILLLLDGSQELTEEDRQLLELTAGKKRIIVLNKTDLGQKLTAAEIAKESGSEV 359

Query: 343 ISS--FTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYL-EMASL 395
           IS+     E L+EL   IK +    FK +  S    + +++R    L++  + L ++AS 
Sbjct: 360 ISTSIMMKENLDELEALIKKLF---FKGIENSNDQVLVTNQRQAGLLAKAKQQLADVASG 416

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            E    +D++  +   A  SLG+ITG    ++L++ +FS+FC+GK
Sbjct: 417 LEAGMPVDLVQIDFTGAWESLGEITGDSAPDELINDLFSQFCLGK 461


>gi|188590674|ref|YP_001922717.1| tRNA modification GTPase TrmE [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500955|gb|ACD54091.1| tRNA modification GTPase TrmE [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 456

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 159/463 (34%), Positives = 260/463 (56%), Gaps = 33/463 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRYFFGLD- 57
            E +TI  ++T      +SIIR+SG     +   I   K     K     ++RY   ++ 
Sbjct: 2   REFDTICGIATPIGEGGVSIIRISGSKALDIISKIFVGKNNIDLKQMKTYTMRYGHIIEF 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ++D+ ++     P S+T ED  E + HGG+   N ++ ++ K    R+A PGEF++
Sbjct: 62  ESKDVIDEVIISYMKGPHSYTTEDIIEINCHGGVISTNSVMNQVIK-AGARVAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I ++T++  + ++    G LS    +    L +  + IE  
Sbjct: 121 RAFLNGRIDLSQAEAVIDIIKAKTDLSMKSALMQSGGALSMQIKEIRQYLLNTLALIEYG 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ-------GKLGEIIRNGYKIVILGHS 228
           +DF+E+++  + +       +L +K+ I + I +          G+IIR+G  +VI+G  
Sbjct: 181 VDFTEDDEDIDDTL------VLRVKDGIKTTILKVRELLKGADEGKIIRDGLNVVIIGKP 234

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           N GKSSL N L K+  AIVTDIPGTTRD++   L+++G  +KI+DTAGIRET+D VEK G
Sbjct: 235 NVGKSSLLNVLLKEKRAIVTDIPGTTRDIIEEYLNIDGIPIKITDTAGIRETEDTVEKIG 294

Query: 289 IKRTFLEVENADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDH 341
           ++R+  ++E ADLI+L+       E   K+ I+  K+ + I +  K+DL     + + D+
Sbjct: 295 VERSREKIEEADLIILILDSSRDLEEEDKEIINTIKDKNHIVLLNKTDLDRKIADIDLDN 354

Query: 342 L--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNE 397
              IS+ TG G+EEL NKIK +  +        I S+ RH   L +++   E+A   +N 
Sbjct: 355 QIKISAKTGYGIEELKNKIKELFFSGDINSESLIVSNVRHKQALYRSLENCEVALDRVNA 414

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  LD+I+  +  A  +LG+ITG    E +L+ IFS+FC+GK
Sbjct: 415 NEF-LDLISIYVTSAMKALGEITGDELEEDVLNKIFSEFCVGK 456


>gi|160887320|ref|ZP_02068323.1| hypothetical protein BACOVA_05338 [Bacteroides ovatus ATCC 8483]
 gi|156107731|gb|EDO09476.1| hypothetical protein BACOVA_05338 [Bacteroides ovatus ATCC 8483]
          Length = 465

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 249/468 (53%), Gaps = 37/468 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG--LDG- 58
           ++TI A++T A   AI  IR+SGP    +   I K  K       +      FG   DG 
Sbjct: 3   QDTICAIAT-AQGGAIGNIRVSGPEAISITGSIFKPAKAGKLLSEQKPYTLTFGRIYDGD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EMIDEVLVSLFRTPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +      + S ++    +G  I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298

Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLY-STYTEEYDHLISSFT 347
            A+++L ++  +N+  +I        P+      I +  K+DL      E+   L+  F 
Sbjct: 299 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEGKQKEDLLSLLKDFP 358

Query: 348 GEGLEEL-INKIKSILSNKFKKLPFS------------IPSHKRHLYHLSQTVRYLEMAS 394
            E  E + I+  +   +++ +K+               I ++ RH   L++ +  +    
Sbjct: 359 KESTESIFISAKQRENTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 418

Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L+ +  G D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 419 NGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|320527161|ref|ZP_08028348.1| tRNA modification GTPase TrmE [Solobacterium moorei F0204]
 gi|320132489|gb|EFW25032.1| tRNA modification GTPase TrmE [Solobacterium moorei F0204]
          Length = 459

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 232/431 (53%), Gaps = 15/431 (3%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG-RILDKGLLIVFPSPESFTG 77
           AIS+IR+SG    Q+   +  K     +  ++ Y    +G   +D+ L+ +F +P+S+TG
Sbjct: 35  AISVIRISGSDAIQIVTDLTGKDLSDAKGYTIHYATIKEGNESVDEVLVSLFRAPKSYTG 94

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG+ +   +L  L      R+A  GEF+ RAF +GK+DL +AE + DLI +
Sbjct: 95  EDVVEISCHGGVYITRKVLS-LILGAGARMARRGEFTERAFLSGKMDLSQAEGINDLIWA 153

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           + E+  + ++  + G ++ L     + LT I S IE ++D+ E +DV   + +E+L    
Sbjct: 154 KDEINAKSAIHSLKGSVAKLMRSLEEDLTQIISNIEVNIDYPEYDDVHQLTEEEILPRAE 213

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
              +DI   I   +   +I+ G   VILG  N GKSSL NAL ++D AIVTD+ GTTRD+
Sbjct: 214 KWIDDIHQIIVTAQQSAVIKEGINTVILGRPNVGKSSLLNALLEEDKAIVTDVAGTTRDL 273

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL----KEINSKKE 313
           +   + L G  + + DTAGIR++DD +E+ GI ++   +E A L++++    +E+  + +
Sbjct: 274 VEGTVRLSGITLNLIDTAGIRKSDDAIEQIGITKSLQALEKAQLVIVVLDGSEELTEEDQ 333

Query: 314 --ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +   KN + I +  K D  S +      +  S   + + EL N I     +++     
Sbjct: 334 ELLEKTKNYNRIVVYNKKDKDSVHA----GISISAIQKDITELTNAIVEKYQSEYIAANS 389

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCVDVEQLL 429
              +++R + +  Q  + +  A +N    G  LD++  +L  A  +L +ITG    E LL
Sbjct: 390 DTLNNERQIGYALQAEQAMREA-VNALHAGMELDLVTIDLEKAWTALRQITGKAGKEDLL 448

Query: 430 DIIFSKFCIGK 440
           D IFS+FC+GK
Sbjct: 449 DEIFSRFCLGK 459


>gi|325475103|gb|EGC78289.1| tRNA modification GTPase mnmE [Treponema denticola F0402]
          Length = 472

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 165/468 (35%), Positives = 241/468 (51%), Gaps = 38/468 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           + I A++T   P+A+ I+R SG     +   I  K K            G        + 
Sbjct: 10  DPIAAIATALSPAALGIVRASGKGAIDLASAIFSKPKKLKEAQGNTILHGWVLDPESKKE 69

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+  + V+  P+SFTGEDS EF  HGG AVV  I   L +    R A  GEF+ RAF N
Sbjct: 70  VDEVTVCVYREPKSFTGEDSVEFICHGGTAVVLKIYRLLIEN-GFRAAEGGEFTFRAFAN 128

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK DL  AE++ ++I+S+T++   L+   +SG L S   +    LT + +  + ++++ E
Sbjct: 129 GKADLTRAEAVNEIINSKTDINIELAAGRLSGNLFSGIEEIKHGLTAVIAAADVEIEYPE 188

Query: 181 EEDVQN--FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E+     FS   +L  I  LK+   S  ++    +I   G K+V+ G +NAGKSSLFNA
Sbjct: 189 DEETSQGAFSPDLILRIIEPLKDLADSWAAE----KIFIQGAKVVLAGKTNAGKSSLFNA 244

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L K+D AIV+DI GTTRD L   L+  G  V + DTAGIR T D +E  G++R+     N
Sbjct: 245 LLKEDRAIVSDIHGTTRDWLEASLNFNGIPVSLYDTAGIRYTQDSIEAIGVERSLEMSRN 304

Query: 299 ADLILLL---KEINS-----KKEISFPKNID--FIFIGTKSDLYSTYTEEYDH------- 341
           ADLIL L   K+I S     K++  F KN     I + TK DL  T ++E          
Sbjct: 305 ADLILYLCDPKDILSAGSLNKEDSEFIKNAKAPVITVITKEDLLDTESKEKIKEILKAEK 364

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVRYLEMA 393
                +ISS    G++ L  K  S+L+       FS  +    +R    + + +  L+ A
Sbjct: 365 IAEPIIISSKASNGIKALSEKAYSVLAKNTGSSGFSKTASLGSERQRDAVQKALDVLKTA 424

Query: 394 SLNE-KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             N  +   LD+I E+L  A   LG+ITG V  + +LD +FS FC+GK
Sbjct: 425 YQNSLEGFPLDLIVEDLEEALSFLGEITGEVRSDDILDKVFSGFCVGK 472


>gi|260887478|ref|ZP_05898741.1| tRNA modification GTPase TrmE [Selenomonas sputigena ATCC 35185]
 gi|330840116|ref|YP_004414696.1| tRNA modification GTPase mnmE [Selenomonas sputigena ATCC 35185]
 gi|260862765|gb|EEX77265.1| tRNA modification GTPase TrmE [Selenomonas sputigena ATCC 35185]
 gi|329747880|gb|AEC01237.1| tRNA modification GTPase mnmE [Selenomonas sputigena ATCC 35185]
          Length = 459

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 144/460 (31%), Positives = 235/460 (51%), Gaps = 24/460 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---- 56
            + +TI A++T      + I+RLSG S  +     F     +      +    +G     
Sbjct: 2   QQADTISAIATAVGEGGVGIVRLSGASAIETASRMFCAAGARKLADAGARDLLYGTVVRE 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           DGR++D+ L +V  +P S+T ED  E   HGG   +  +L  L      R A  GEF++R
Sbjct: 62  DGRLVDEALCLVMRAPHSYTKEDVVELQCHGGAVSLREVLA-LTYRHGARAAERGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL EA+++ D++ ++TE    ++   ++G  S       + +  + + +EA +
Sbjct: 121 AFLNGRLDLAEAQAVMDVVQAKTEKGLEMAAGHLAGHFSERIRSMREDILALLAHLEAVI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF EE  V     +E    +  L   +   +     G I+R+G +  I+G  N GKSSL 
Sbjct: 181 DFPEE-GVDEIVVEEAREKVSALHASLRRIVQTAHTGRILRDGLETAIVGRPNVGKSSLL 239

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL ++D AIVTD+PGTTRD +    D+ G  ++I DTAGIR T+D VE+ G+++    V
Sbjct: 240 NALLREDRAIVTDVPGTTRDTIEEYADIGGVPLRIIDTAGIRTTEDAVERIGVEKARAHV 299

Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTY-TEEYDHL------- 342
           ++A L+L L    + + ++ E  ++  +  D + + TKSDL     TE   +L       
Sbjct: 300 KSAALVLALFDGSRPLEAEDEEILALLEGKDALIVVTKSDLPRVLDTERLQNLVHLPLIE 359

Query: 343 ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
           I++   EG+  L   I + +   + +    S  +  R    L     +L  A S  ++  
Sbjct: 360 ITTKEEEGISPLAAAILEKVYDGEERSGEGSFVADLRTKNLLEAAADHLTAAISTMDQGL 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           GLD I+ +LR +   LG+ITG    + +LD IFS+FC+GK
Sbjct: 420 GLDFISIDLRSSLEKLGEITGETVGDDVLDEIFSRFCVGK 459


>gi|282880433|ref|ZP_06289141.1| tRNA modification GTPase TrmE [Prevotella timonensis CRIS 5C-B1]
 gi|281305704|gb|EFA97756.1| tRNA modification GTPase TrmE [Prevotella timonensis CRIS 5C-B1]
          Length = 478

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 155/471 (32%), Positives = 242/471 (51%), Gaps = 45/471 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDGR--I 60
           TI A++T A   AI IIR+SG    Q+ +  F+  K K      S    +G  +D +   
Sbjct: 16  TICALATPA-GGAIGIIRISGKDAIQIADKVFVTSKHKKLHDAKSHTILYGRIVDSQQET 74

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  L+ VF SP S+TGEDS E   HG   ++  ILE L K    R A PGE+++RAF N
Sbjct: 75  IDDVLVSVFRSPHSYTGEDSVEISCHGSRYIIKTILETLIK-EGCRQAAPGEYTQRAFFN 133

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI+S        +M  + G  S+      ++L  + S IE +LDFS+
Sbjct: 134 GKLDLSQAEAVADLIASTNRATHHAAMSQLKGNFSNELATLRNELLKMTSLIELELDFSD 193

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED++  +  E+L     +KN I++     + G  I+ G  + I+G +N GKS+L N L 
Sbjct: 194 HEDLEFANRDELLALAHKIKNRITTLAHSFETGNAIKQGVPVAIIGKTNVGKSTLLNQLL 253

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++D AIV++I GTTRDV+    ++ G   +  DTAGIR+T D +E  GI+RT+ ++E A 
Sbjct: 254 EEDKAIVSNIHGTTRDVIEDTTEINGITFRFIDTAGIRKTTDEIENLGIERTYQKIEEAK 313

Query: 301 LILLLK-EINSKKEI----SFPKNIDFIFIGTKSDLYSTYT------------------E 337
           ++L L  E  +K+E+       K+   I I  K D+  T T                  +
Sbjct: 314 IVLWLTDEAPTKQEVDDLLKRIKDKSLICIQNKMDISPTPTLSVFENITNQKSNERNAKK 373

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL-------SQTVRYL 390
            +   +S+  G  ++ L + +  +           I +  RH   L       S+ +  L
Sbjct: 374 RFSLQLSAKLGTNMDLLRSTLCQVAEVPEVTENDVIVTSTRHYNALLRSEESISRVIEGL 433

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           E+      +   D+++E+LRL    L +IT G +   ++L+ IF  FCIGK
Sbjct: 434 EL------ELSGDLLSEDLRLCLEHLAEITGGLITTHEVLNNIFQHFCIGK 478


>gi|29349959|ref|NP_813462.1| tRNA modification GTPase TrmE [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|32171810|sp|Q89Z26|MNME_BACTN RecName: Full=tRNA modification GTPase mnmE
 gi|29341870|gb|AAO79656.1| putative GTPase, ThdF family [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 465

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 155/469 (33%), Positives = 246/469 (52%), Gaps = 39/469 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI---- 60
           ++TI A++T A   AI  IR+SGP    +   I +  K     +  + +    GRI    
Sbjct: 3   QDTICAIAT-AQGGAIGSIRVSGPEAISITSRIFQPAKAGKLLSEQKPYTLTFGRIYNGE 61

Query: 61  --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EVIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S        KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRSKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +   ++  IS  +    +G  I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLVHSFNVGNAIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTINIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298

Query: 298 NADLILLL-------KEINSKKEISFPK--NIDFIFIGTKSDLYSTYT-EEYDHLISSFT 347
            A+++L +        +I    E   P+      I +  K+DL      EE   L+ +F 
Sbjct: 299 QAEIVLWMVDSSDASSQIKQLSEKIIPRCEEKQLIVVFNKADLIEEMQKEELSALLKNFP 358

Query: 348 GEGLEELI---------NKIKSILSNKFKKLPFS-----IPSHKRHLYHLSQTVRYLEMA 393
            E  + +          ++++ +L N    LP       I ++ RH   LS+ +  +   
Sbjct: 359 KEYTKSIFISAKERRQTDELQKMLINA-AHLPTVTQNDIIVTNVRHYEALSKALDAIHRV 417

Query: 394 S--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              L+    G D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 418 QDGLDSHISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|227508120|ref|ZP_03938169.1| tRNA modification GTPase TrmE [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227511145|ref|ZP_03941194.1| tRNA modification GTPase TrmE [Lactobacillus buchneri ATCC 11577]
 gi|227085627|gb|EEI20939.1| tRNA modification GTPase TrmE [Lactobacillus buchneri ATCC 11577]
 gi|227192349|gb|EEI72416.1| tRNA modification GTPase TrmE [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 464

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 152/471 (32%), Positives = 248/471 (52%), Gaps = 47/471 (9%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---G 58
           E +TI A+ST      ISI+R+SG     V + + + K    + AS    +G  +D    
Sbjct: 7   EFDTIAAISTPPGEGGISIVRISGEEALDVAKNVYRGKN-LDKVASNTINYGHIVDPSTN 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ +L +  +P ++T ED  E + HGGI   N IL+ L      R+A PGEF++RAF
Sbjct: 66  QEVDEVMLSIMRAPHTYTKEDIIEINCHGGIVATNRILQ-LVLSNGARMAEPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL ++E++ DLI ++T+   + ++  + G LS L       +  + + +E ++D+
Sbjct: 125 LNGRIDLSQSEAVMDLIEAKTDRSMKAAISQLDGNLSHLIKHLRKDILDVLAQVEVNIDY 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +SK +      +   I   +   K G+I+R+G    I+G  N GKSSL N 
Sbjct: 185 PEYDDVETMTSKLLREKATDVHKRIVQLLQTAKQGKILRDGLATSIIGRPNVGKSSLLNH 244

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVTD+PGTTRDVL    ++ G  +K+ DTAGIR+T+D VEK G+ R+   + +
Sbjct: 245 LLHEDKAIVTDVPGTTRDVLEEYANVSGVPLKLIDTAGIRDTNDKVEKIGVDRSRKAINS 304

Query: 299 ADLIL---------------LLKEINSKKEISFPKNIDFIF---------IGTKSDLYST 334
           ADL+L               L++  N KK I      D            +    ++ ST
Sbjct: 305 ADLVLLVLNASEPLTEEDRQLIEATNKKKRIVVLNKTDLPIKLNLSEIKRLTKAQNIIST 364

Query: 335 YTEEYDHLISSFTGEGLEELINKI---KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
              + D L      +GLEELI+ +   + I S++       + ++ RH+  L+Q    LE
Sbjct: 365 SAIKADGL------KGLEELISTMFFNEGIASSQND----VVVTNARHIGLLNQAKSALE 414

Query: 392 --MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +  L+E    +D++  ++      LG+ITG    ++L+D +FS+FC+GK
Sbjct: 415 DVLKGLDEG-MPVDLVQIDMTRCWDFLGEITGDSYQDELIDQLFSQFCLGK 464


>gi|315223865|ref|ZP_07865713.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea F0287]
 gi|314946195|gb|EFS98196.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea F0287]
          Length = 472

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 155/473 (32%), Positives = 258/473 (54%), Gaps = 49/473 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR------YFFGLDGR 59
           +TI A++T +   AI++IRLSG     + + + K   P+  K+ L       +   L+ +
Sbjct: 11  DTIVALATASGIGAIAVIRLSGKEAIAIADSVFK---PYTGKSLLEAPSHTVHLGTLESK 67

Query: 60  --ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM---PNLRLANPGEFS 114
             ++D+ L  +F   +S+TGE   EF  HG     N I+EE+ K+      RLA+ GEF+
Sbjct: 68  DQVIDECLATIFKGTKSYTGEPVVEFSCHGS----NYIVEEVIKLCLAKGARLADAGEFT 123

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+ L +AE++ADLI+S+++   +++++ M G  +S       +L +  S IE 
Sbjct: 124 KRAFLNGKLALNQAEAVADLIASDSKASHQVALQQMRGGFTSEIEGLRQELLNFTSLIEL 183

Query: 175 DLDFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           +LDFSEE DV+ F+ +     +L  +K  + S +    +G +++NG  + I+G  NAGKS
Sbjct: 184 ELDFSEE-DVE-FADRTQFKLLLSTIKTTVLSLLQSFSVGNVLKNGIPVAIVGKPNAGKS 241

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           +L NAL  ++ AIV+DI GTTRD +   L + G   +  DTAGIR+T D +E  G+++  
Sbjct: 242 TLLNALLNEERAIVSDIAGTTRDTIEETLHIGGIAFRFIDTAGIRDTQDQIEAIGVQKAK 301

Query: 294 LEVENADLILLL---KEINSKKEISFPK-----NIDFIFIGTKSDLY--STYTEEYDHLI 343
            ++E A ++L L   K+ ++++ ISF K        F+ +  K+DL   S  T   + ++
Sbjct: 302 EKIEKASIVLYLFDVKDSSAQEIISFVKENYREGTKFVLLHNKTDLSTESNITPFDNEIL 361

Query: 344 SSFTG-----------EG-----LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
            S  G           EG     L++ ++     L+N  K    +   H   L++  Q++
Sbjct: 362 QSLKGYTDTLLRISAKEGNNILALKDFLSHYAQSLNNTGKATIITNIRHYEALHNTLQSI 421

Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +E   L  +  G D++A ++R A   LG ITG V  +++L  IFS+FCIGK
Sbjct: 422 ERIEQG-LQLQLSG-DLLAIDIREALYHLGTITGAVSNDEVLGNIFSRFCIGK 472


>gi|284049397|ref|YP_003399736.1| tRNA modification GTPase TrmE [Acidaminococcus fermentans DSM
           20731]
 gi|283953618|gb|ADB48421.1| tRNA modification GTPase TrmE [Acidaminococcus fermentans DSM
           20731]
          Length = 457

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 140/457 (30%), Positives = 238/457 (52%), Gaps = 25/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFG--LDGR--I 60
           +TI A++T     +I +IR+SGP    +   F   +++P  R+ + +  +G  LDG+  +
Sbjct: 4   DTISAIATALGVGSIGVIRVSGPDSLAIVRRFFAGREQPG-RENARKLLYGHILDGKGQV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L +  P P S+TGED  E   HGG   +  IL  L      R A PGEF++RAF N
Sbjct: 63  VDEVLAVYMPGPHSYTGEDVCEIQCHGGREALQEILR-LTFQAGARPAEPGEFTKRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL EAES+ D+I++ +      +  G  G LS         L  +   +EA +D+ E
Sbjct: 122 GRLDLAEAESVMDIINARSRQALAAANRGHEGGLSRQVKALRKTLRDLVVQLEACIDYPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           + D++  +    ++ +   K  + + + +G  G I+R G +  I+G  N GKSSL N+L 
Sbjct: 182 D-DIEEVTYDRTVSTLEEGKKAVETLVRRGTAGRILREGLRTAIVGRPNVGKSSLLNSLL 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + D AIV++IPGTTRD++   + + G  + ++DTAG+R+T D+VEK G++R+   +E+A 
Sbjct: 241 QADRAIVSNIPGTTRDIIEEQMTIGGIPLVLTDTAGLRDTSDLVEKIGVERSRAALEDAQ 300

Query: 301 LIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISS 345
           L L               LL+ +  +K++      D         L  TY E+   ++S 
Sbjct: 301 LALVVLDGSQPLDPEDRQLLESLRDRKKLILVNKADLPLALDVEGLRKTYGEKDVLVLSV 360

Query: 346 FTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLD 403
             G+GLE++   ++  +          S+  + R    L + ++ LE A    +     D
Sbjct: 361 KEGKGLEQVEQWLRDFVYGEGSDSESSSMTQNARQQNLLEKALQSLEDALAGARQHLPYD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  +L  A   LG+ITG    ++++D IF++FC+GK
Sbjct: 421 CLTIDLTQALHDLGEITGEDVPDEIIDEIFAQFCVGK 457


>gi|299148912|ref|ZP_07041974.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_23]
 gi|298513673|gb|EFI37560.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_23]
          Length = 465

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 249/468 (53%), Gaps = 37/468 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG--LDG- 58
           ++TI A++T A   AI  IR+SGP    +   I K  K       +      FG   DG 
Sbjct: 3   QDTICAIAT-AQGGAIGSIRVSGPEAISITGSIFKPAKAGKLLSEQKPYTLTFGRIYDGD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EMIDEVLVSLFRAPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +      + S ++    +G  I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298

Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLYSTYTEE-YDHLISSFT 347
            A+++L ++  +N+  +I        P+      I +  K+DL     +E    L+  F 
Sbjct: 299 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKTDLIEDKQKENVLSLLKDFP 358

Query: 348 GEGLEEL-INKIKSILSNKFKKLPFS------------IPSHKRHLYHLSQTVRYLEMAS 394
            E  E + I+  +   +++ +K+               I ++ RH   L++ +  +    
Sbjct: 359 KESTESIFISAKQRKNTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 418

Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L+ +  G D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 419 NGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|315284189|ref|ZP_07872091.1| tRNA modification GTPase TrmE [Listeria marthii FSL S4-120]
 gi|313612167|gb|EFR86407.1| tRNA modification GTPase TrmE [Listeria marthii FSL S4-120]
          Length = 425

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 135/409 (33%), Positives = 225/409 (55%), Gaps = 21/409 (5%)

Query: 52  YFFGL---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLA 108
           Y F L   DG ++++ +  V  +P +FT ED  E + HGGI  VN +L+ L +     LA
Sbjct: 18  YTFELKDEDGEVIEEVMATVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLA 76

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
            PGEF++RAF NG+IDL +AE++ DLI ++T+    +++  M G LS L      ++   
Sbjct: 77  EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 136

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
            + +E ++D+ E +DV+  + + +L     ++  +   +     G+I+R G    I+G  
Sbjct: 137 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRP 196

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           N GKSSL N L +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G
Sbjct: 197 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 256

Query: 289 IKRTFLEVENADLILLL----KEINSKKEISFPKNI--DFIFIGTKSDLYSTYTEEYDHL 342
           ++R+   + +AD ILL+    +E+ ++ E  F      +++ +  K+DL +    E    
Sbjct: 257 VERSRKALADADFILLVLNQNEELTAEDEALFEAAAGHNYVVVLNKTDLETKLDIEKVRE 316

Query: 343 I---------SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
           I         S    EGLE L   IK++  +        +  S+ RH+  L Q +  L  
Sbjct: 317 IAGENPIVATSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALDALNA 376

Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   +    +DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 377 VTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 425


>gi|293370767|ref|ZP_06617313.1| tRNA modification GTPase TrmE [Bacteroides ovatus SD CMC 3f]
 gi|292634127|gb|EFF52670.1| tRNA modification GTPase TrmE [Bacteroides ovatus SD CMC 3f]
          Length = 473

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 152/468 (32%), Positives = 248/468 (52%), Gaps = 37/468 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A++T A   AI  IR+SGP    +   I K  K     +  + +    GRI D+ 
Sbjct: 11  QDTICAIAT-AQGGAIGSIRVSGPEAISITGSIFKPAKAGKLLSEQKPYTLTFGRIYDED 69

Query: 65  LLI------VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            +I      +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 70  EMIDEVLVSLFRAPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAQPGEYTQRAF 128

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE +LDF
Sbjct: 129 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 188

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +      + S ++    +G  I+NG  + I+G +NAGKS+L N
Sbjct: 189 SEE-DVE-FADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 246

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++
Sbjct: 247 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 306

Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLYSTYTEE-YDHLISSFT 347
            A+++L ++  +N+  +I        P+      I +  K+DL     +E    L+  F 
Sbjct: 307 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENVLSLLKDFP 366

Query: 348 GEGLEEL-INKIKSILSNKFKKLPFS------------IPSHKRHLYHLSQTVRYLEMAS 394
            E  E + I+  +   +++ +K+               I ++ RH   L++ +  +    
Sbjct: 367 KESTESIFISAKQRKNTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 426

Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L+ +  G D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 427 NGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 473


>gi|83771674|dbj|BAE61804.1| unnamed protein product [Aspergillus oryzae]
          Length = 555

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 113/298 (37%), Positives = 173/298 (58%), Gaps = 23/298 (7%)

Query: 31  FQVCEFICKKKK-PFPRKASLRYFFGL-----DGRILDKGLLIV-FPSPESFTGEDSAEF 83
           +Q+ + +C K   P PR A++R  F           LD G L++ FP+P + TGED  E 
Sbjct: 23  YQIYQALCPKAALPRPRFAAVRTLFDPTREPSSSSALDAGALVLYFPAPNTVTGEDVLEL 82

Query: 84  HVHGGIAVVNGILEELAKMPN----LRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
           H+HGG A+V  +L  ++++      +R A PGEF+RRAF N ++DL + E+L D +S++T
Sbjct: 83  HLHGGPAIVKSVLTAISRVSQPDSLVRYAEPGEFTRRAFMNNRLDLPQIEALGDTLSADT 142

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN---DI 196
           E QRRL++ G S  LS  Y QW  +L + R  +EA +DF+E++     S + VL+    +
Sbjct: 143 EQQRRLAVRGASDALSRRYEQWRQQLLYARGELEALIDFAEDQHFDESSDELVLSVAAQV 202

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L+  +  HI     GE++R+G KI +LG  NAGKSSL N +  K+ AIV+   GTTRD
Sbjct: 203 QALRVQVGFHIQNASKGELLRHGIKIALLGAPNAGKSSLLNQIVGKEAAIVSTEEGTTRD 262

Query: 257 VLTIDLDLEGYLVKISDTAGIRETD---------DIVEKEGIKRTFLEVENADLILLL 305
           ++ + +DL G+  K+ D AGIR              VEKEGI+R       +D+++++
Sbjct: 263 IVDVGVDLSGWYCKLGDMAGIRSEPVNGKESVVIGAVEKEGIRRAKARALESDVVIVV 320


>gi|238917975|ref|YP_002931492.1| tRNA modification GTPase [Eubacterium eligens ATCC 27750]
 gi|238873335|gb|ACR73045.1| tRNA modification GTPase [Eubacterium eligens ATCC 27750]
          Length = 459

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 153/459 (33%), Positives = 243/459 (52%), Gaps = 26/459 (5%)

Query: 5   KETIFAVSTGALPSA-ISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGL---DG 58
           ++TI A+ST  + S  ISI+R+SGP    + + + K KK        S    FG    +G
Sbjct: 4   EDTIAAISTSTVSSGGISIVRISGPDAIIIGDKVFKSKKNIKLANVQSHTVHFGNICDNG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+IV  SP ++T E+  E   HGGI V   +LE +      RLA PGEF++RAF
Sbjct: 64  NEIDEALVIVMKSPNTYTKENIVEIDCHGGILVTKKVLEAVLN-AGARLAEPGEFTKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I+++ +   + S+  + G+LS       + + +  +FIEA LD 
Sbjct: 123 LNGRIDLSQAEAVIDIINAKNDYALKSSVNQLDGKLSEKIKNIREIILNNVAFIEAALDD 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D+ + +   + ND+    N++ + +     G I+ +G + VILG +NAGKSSL N 
Sbjct: 183 PEHFDI-DANVNNLKNDVENCLNNVDNLLKTCDNGRIMHDGVRTVILGKTNAGKSSLLNV 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA+++ AIVTDI GTTRD L   ++L G  + + DTAGIR+TDD+VE  G+ +     E 
Sbjct: 242 LAREERAIVTDIEGTTRDTLEEMINLSGVTLNLIDTAGIRKTDDVVESIGVNKAKKLAEV 301

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLIS 344
           ADL++ + +       N  + +   K+   + I  K+DL    T E            IS
Sbjct: 302 ADLVIYVVDSSRSLDDNDYEIMELIKDKKVLVILNKADLAQVTTAEDIKKIINCETVTIS 361

Query: 345 SFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           +    G+EEL   +K++  N   KF +  +   +  + L   ++    L +  ++     
Sbjct: 362 AKQETGIEELEETVKNMFFNGEVKFNEDVYITSTRHKELLKKAENSLKLVLDGIDNM-VS 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D +  +L  A  +LG I G    + L + IFSKFC+GK
Sbjct: 421 EDFLTIDLMAAYENLGLIIGEEIEDDLANRIFSKFCMGK 459


>gi|298482641|ref|ZP_07000825.1| tRNA modification GTPase TrmE [Bacteroides sp. D22]
 gi|298271104|gb|EFI12681.1| tRNA modification GTPase TrmE [Bacteroides sp. D22]
          Length = 465

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 152/468 (32%), Positives = 248/468 (52%), Gaps = 37/468 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A++T A   AI  IR+SGP    +   I K  K     +  + +    GRI D+ 
Sbjct: 3   QDTICAIAT-AQGGAIGSIRVSGPEAISITGSIFKPAKAGKLLSEQKPYTLTFGRIYDED 61

Query: 65  LLI------VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            +I      +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EMIDEVLVSLFRAPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +      + S ++    +G  I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298

Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLYSTYTEE-YDHLISSFT 347
            A+++L ++  +N+  +I        P+      I +  K+DL     +E    L+  F 
Sbjct: 299 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENVLSLLKDFP 358

Query: 348 GEGLEEL-INKIKSILSNKFKKLPFS------------IPSHKRHLYHLSQTVRYLEMAS 394
            E  E + I+  +   +++ +K+               I ++ RH   L++ +  +    
Sbjct: 359 KESTESIFISAKQRKNTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 418

Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L+ +  G D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 419 NGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|289450403|ref|YP_003475559.1| tRNA modification GTPase TrmE [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184950|gb|ADC91375.1| tRNA modification GTPase TrmE [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 484

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 147/483 (30%), Positives = 247/483 (51%), Gaps = 50/483 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--------KKKKPFPRKASLRYFFGLD 57
           +T  A +T A  + ++++RLSG +  Q+ + +           +  F    ++R   G  
Sbjct: 4   DTCVAYATPAGQAGLAVLRLSGGTAAQIADHVFYPGSWPAKNDRSAFSSLTTVRRMRGYT 63

Query: 58  GRI-----------LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLR 106
            R            +D+ +L  F +P S+TGED  E  +HGG AV N +L+ + K    R
Sbjct: 64  CRFGHVFDPEELKPIDEAVLTRFVAPRSYTGEDVVEISIHGGQAVRNALLQAVVKA-GAR 122

Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166
           LA PGEF+RRAF NGK+DL +AE++ DLI++E + +   ++  + G+LSS   +  + L 
Sbjct: 123 LAEPGEFTRRAFLNGKLDLAQAEAVMDLINAEADSRAEAALGQLQGKLSSYIHEIREPLL 182

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
              + +E  + + E E+    S + +  DI      + + ++    G +IR+G  +++ G
Sbjct: 183 STMAKLELAIQYPEHEE-SVISPESLRKDIETATEKLIALVATYHDGRVIRDGLCVLLAG 241

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N+GKS+L N L+  D AIVTDIPGTTRD +   ++L G+ + + DTAG+R T D VE+
Sbjct: 242 RPNSGKSTLLNTLSGYDRAIVTDIPGTTRDTIEERINLSGHAITVIDTAGLRATTDTVER 301

Query: 287 EGIKRTFLEVENADLILLLKEINSKK------EI-SFPKNIDFIFIGTKSDLYST----- 334
            G+ R+   ++ ADLIL L   +SK       E+ +F  N   + + +K+DL +      
Sbjct: 302 LGVDRSLKAMQKADLILWLFPSDSKSLSEDLAELKNFSGNAPILPLISKADLLNPSDLPR 361

Query: 335 YTE----EYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHK 377
           Y E    E  H            +S     G+E+LI +I  + SN  + L     + + +
Sbjct: 362 YLENLRIEATHAAIGLEFLPPIAVSGLDKSGIEQLIKQIIKLFSNGERILHSDGVLLTAE 421

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437
           RH   + +    +     N  +  LDII+  L+  + +L +ITG    +++   IF+ FC
Sbjct: 422 RHFLIVKKATELMCDLKRNLTELPLDIISLMLQNIAETLAEITGENVTDEVWREIFANFC 481

Query: 438 IGK 440
           +GK
Sbjct: 482 VGK 484


>gi|218134368|ref|ZP_03463172.1| hypothetical protein BACPEC_02262 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989753|gb|EEC55764.1| hypothetical protein BACPEC_02262 [Bacteroides pectinophilus ATCC
           43243]
          Length = 463

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 145/407 (35%), Positives = 222/407 (54%), Gaps = 32/407 (7%)

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           D ++LD+ L+ V  +P ++T ED AE + HGGI V   IL+ +      R A PGEF++R
Sbjct: 66  DDKVLDEVLVSVMKAPNTYTREDVAEINCHGGILVTRKILDAVID-AGARPAEPGEFTKR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR------- 169
           AF NG+IDL +AES+ D+I+S+ E         +S  +  L G+  +++T IR       
Sbjct: 125 AFLNGRIDLTQAESVIDIINSQNEY-------ALSSSVMQLRGKLSEEITRIREIILDNT 177

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           +FIEA LD  E   +  +  K +  D+    + + S +     G I+++G + VILG +N
Sbjct: 178 AFIEAALDDPEHYTLDGYGDK-LAEDVDKCVDKLDSLLKTSDNGRILKDGIRTVILGKTN 236

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
           AGKSSL NALA +D AIVTDI GTTRD L   + L+G ++ ++DTAGIR+T+DIVEK GI
Sbjct: 237 AGKSSLLNALAGEDRAIVTDIAGTTRDTLEESISLDGVILNLTDTAGIRDTEDIVEKIGI 296

Query: 290 KRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-- 341
           ++      NADLI+ + +       N KK + F K    I +  K+D+ +  + E     
Sbjct: 297 EKAMKCAGNADLIIYVADATRNLDDNDKKILDFVKGRHVIVLLNKTDVENVLSVEQMRAH 356

Query: 342 ------LISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
                  IS+    G+ EL + I+ +  + +         ++ RH   L +++  L++  
Sbjct: 357 TDFPVLAISAREQTGIRELSDTIRQMFFAGQISSNDQIYITNARHKNMLKESINSLKLVK 416

Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + E     D    +L  A  SLGKI G    + L++ IFSKFC+GK
Sbjct: 417 ESIENGMPEDCYTIDLLNAYESLGKIIGQAVEDDLVNQIFSKFCMGK 463


>gi|227523332|ref|ZP_03953381.1| tRNA modification GTPase TrmE [Lactobacillus hilgardii ATCC 8290]
 gi|227089523|gb|EEI24835.1| tRNA modification GTPase TrmE [Lactobacillus hilgardii ATCC 8290]
          Length = 464

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 152/471 (32%), Positives = 247/471 (52%), Gaps = 47/471 (9%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---G 58
           E +TI A+ST      ISI+R+SG     V + + + K    + AS    +G  +D    
Sbjct: 7   EFDTIAAISTPPGEGGISIVRISGEEALDVAKNVYRGKN-LDKVASNTINYGHIVDPSTN 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ +L +  +P ++T ED  E + HGGI   N IL+ L      R+A PGEF++RAF
Sbjct: 66  QEVDEVMLSIMRAPHTYTKEDIIEINCHGGIVATNRILQ-LVLSNGARMAEPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL ++E++ DLI ++T+   + ++  + G LS L       +  + + +E ++D+
Sbjct: 125 LNGRIDLSQSEAVMDLIEAKTDRSMKAAISQLDGNLSHLIKHLRKDILDVLAQVEVNIDY 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +SK +      +   I   +   K G+I+R+G    I+G  N GKSSL N 
Sbjct: 185 PEYDDVETMTSKLLREKATDVHKRIVQLLQTAKQGKILRDGLATSIIGRPNVGKSSLLNH 244

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVTD+PGTTRDVL    ++ G  +K+ DTAGIR+T+D VEK G+ R+   + +
Sbjct: 245 LLHEDKAIVTDVPGTTRDVLEEYANVSGVPLKLIDTAGIRDTNDKVEKIGVDRSRKAINS 304

Query: 299 ADLIL---------------LLKEINSKKEISFPKNIDFIF---------IGTKSDLYST 334
           ADL+L               L+   N KK I      D            +    ++ ST
Sbjct: 305 ADLVLLVLNASEPLTEEDRQLIDATNKKKRIVVLNKTDLPIKLNLSEIKRLTKAQNIIST 364

Query: 335 YTEEYDHLISSFTGEGLEELINKI---KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
              + D L      +GLEELI+ +   + I S++       + ++ RH+  L+Q    LE
Sbjct: 365 SAIKADGL------KGLEELISTMFFNEGIASSQND----VVVTNARHIGLLNQAKSALE 414

Query: 392 --MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +  L+E    +D++  ++      LG+ITG    ++L+D +FS+FC+GK
Sbjct: 415 DVLKGLDEG-MPVDLVQIDMTRCWDFLGEITGDSYQDELIDQLFSQFCLGK 464


>gi|1524359|emb|CAA66716.1| GTPase [Synechocystis sp. PCC 6803]
          Length = 456

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 146/464 (31%), Positives = 241/464 (51%), Gaps = 39/464 (8%)

Query: 5   KETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG----- 55
           ++TI  ++T  +P   +I ++RLSGP    + +  F     + +    S R  +G     
Sbjct: 4   EDTIARIATAIVPQQGSIGVVRLSGPQSLTIAKTLFDAPGNQTW---ESHRILYGHVRHP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
                +D+ LL++  +P S+T ED  EF  HGGI +    + +L      RLA PGEFS 
Sbjct: 61  QTKAAIDEALLLLMLAPRSYTKEDVVEFQCHGGI-MPVQQVLQLCLQQGARLAQPGEFSF 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AES ++L+ +++     +++ G+ G+L+       +    I + +EA 
Sbjct: 120 RAFLNGRLDLTQAESHSELVGAQSPQAGAIALAGLQGKLAQPIRDLRNTCLDILAEVEAR 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF  E+D+       +   +  L   +   ++  + GE++R G K+ I+G  N GKSSL
Sbjct: 180 IDF--EDDLPPLDEDSIRQQLQNLYQQLEDILNTAQAGELLRTGLKVAIVGQPNVGKSSL 237

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NA ++ D AIVTD+PGTTRDV+   L +EG  +++ DTAGIRET D VE+ G++R+   
Sbjct: 238 LNAWSRTDRAIVTDLPGTTRDVVESQLVVEGIPIQVLDTAGIRETADQVEQIGVERSRKA 297

Query: 296 VENADLILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
            + ADL+LL                +++  +  I     ID      ++DL S   E  +
Sbjct: 298 AQQADLVLLTVDAHQGWTEADQLIYEQVKDRPLILVINKIDL----GRADLVSYPPEITN 353

Query: 341 HLISSFTGE-GLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
            ++++     G+E L N I   ++      + L F+I   +  +   +Q        ++ 
Sbjct: 354 TVLTAAAANLGIEALENAIIEQVNQTNLSPQNLDFAINQRQEAVLTEAQLALKQLQQTMA 413

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+   LD    +LRLA  +LG++TG    E +LD IFS+FCIGK
Sbjct: 414 EQ-LPLDFWTIDLRLAMNALGEVTGETVTESVLDRIFSRFCIGK 456


>gi|169351641|ref|ZP_02868579.1| hypothetical protein CLOSPI_02422 [Clostridium spiroforme DSM 1552]
 gi|169291863|gb|EDS73996.1| hypothetical protein CLOSPI_02422 [Clostridium spiroforme DSM 1552]
          Length = 444

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 144/453 (31%), Positives = 241/453 (53%), Gaps = 34/453 (7%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGLL 66
           I AV+T  L +AISIIR+SGP      +     K       ++ Y + +D G+ +D+ L+
Sbjct: 6   IVAVATSRLEAAISIIRISGPESIAFVQKFFTGKIIDKESHTINYGYIIDDGKRIDEVLV 65

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
            ++   ++FTGE+  E + HGG+ +   +LE   K    R+A  GEFS+RAF NG+IDL 
Sbjct: 66  NIYRGKKTFTGEEMVEINCHGGVYITKRVLEVCIK-NGARIAERGEFSKRAFLNGRIDLS 124

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D+IS++      L++ G+ G +S+      + L  I + IE ++D+ E +DV+ 
Sbjct: 125 QAEAISDIISAKNSYASELALNGIRGNISNFIEDLKEDLIKIITQIEVNIDYPEYDDVEE 184

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            ++  +L +   L   ++  ++  K  ++++ G K VI+G  N GKSSL NAL +++ AI
Sbjct: 185 LTATSLLPESKVLLEKMNKILNDSKNIKLVKEGIKTVIIGKPNVGKSSLLNALLQEEKAI 244

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL-- 304
           VT+I GTTRD++   + ++G ++ + DTAGIRETDDI+E  G++++   +  ADL+LL  
Sbjct: 245 VTNIAGTTRDIVEGSISIDGIVLNMIDTAGIRETDDIIESMGVEKSKELINQADLVLLVI 304

Query: 305 ---LKEINSKKE-ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
              LK     +E +    + + I +  K+D         D ++ S     +  L NK+K 
Sbjct: 305 DGSLKLDQGDQELLELTNDSNRIIVLNKAD--QGIKVNLDGVVISAKDSDIGALTNKVKE 362

Query: 361 -------------ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
                        IL+N  + +     S       L+Q V  ++M          D+I  
Sbjct: 363 MFELGKIIDNNDHILTNARQTMLLQKASQ-----ALNQAVEAMKML------VPTDLIVT 411

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L     +L +I G    E LLD +F +FCIGK
Sbjct: 412 DLYECWNNLKEILGEKAKEDLLDELFKRFCIGK 444


>gi|163788828|ref|ZP_02183273.1| tRNA modification GTPase [Flavobacteriales bacterium ALC-1]
 gi|159876065|gb|EDP70124.1| tRNA modification GTPase [Flavobacteriales bacterium ALC-1]
          Length = 461

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 247/465 (53%), Gaps = 37/465 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDGR-I 60
           +TI A++T +   AI++IRLSG     +    F     K    +++     G  +D +  
Sbjct: 4   DTIVALATPSGSGAIAVIRLSGSEAITIASKCFKSVTNKDLKEQSTHTIHLGHIMDAKKT 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL VF +P S+TGED  E   HG   +   I++ L      R+A  GEF+ RAF N
Sbjct: 64  VDEVLLSVFKNPNSYTGEDVIEISCHGSSYIQQEIIQ-LFLRQGCRMATAGEFTLRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLISS+ E   +++M+ M G  SS   +  ++L +  S IE +LDF+E
Sbjct: 123 GKLDLSQAEAVADLISSDNEASHQIAMQQMRGGFSSEIAKLREELLNFASLIELELDFAE 182

Query: 181 EE----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           E+    D   F  K+++  I F+   +   I    +G +I+NG  + I+G  N GKS+L 
Sbjct: 183 EDVEFADRTQF--KQLIERINFV---LKRLIDSFAVGNVIKNGIPVAIVGEPNVGKSTLL 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  +D AIV++I GTTRD +  ++ + G   +  DTAGIRET D+VE  GIK+TF ++
Sbjct: 238 NALLNEDRAIVSEIAGTTRDTIEDEISIGGIGFRFIDTAGIRETKDVVESIGIKKTFEKI 297

Query: 297 ENADLILLL--KEINS-----------KKEISFPKNIDFIFIGTKSD-LYSTYTEEYDH- 341
           E + + + L   + NS           K    +P+    + I  K D L      E +  
Sbjct: 298 EQSQVTIYLFDAQKNSDNLEAVRIEVEKIRNKYPQK-PLLVIANKIDALDDLQLAEINRT 356

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                L+S+ TG G+E+L + + ++++    +   +I ++ RH   L +    ++     
Sbjct: 357 IADVLLLSAKTGFGVEQLTSSLLNLINTGALRNNETIVTNSRHYDALLKAFEEIQKVQHG 416

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            E     D++A ++R A    G+ITG +  + LL  IF+ FCIGK
Sbjct: 417 LETGLSGDLLAIDIRQALYHFGEITGEITNDDLLGNIFANFCIGK 461


>gi|167748063|ref|ZP_02420190.1| hypothetical protein ANACAC_02807 [Anaerostipes caccae DSM 14662]
 gi|167652055|gb|EDR96184.1| hypothetical protein ANACAC_02807 [Anaerostipes caccae DSM 14662]
          Length = 472

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 151/458 (32%), Positives = 246/458 (53%), Gaps = 27/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG---LDGRI 60
           +TI A++T    S I IIR+SGP    +    F  K++K   + A+    +G    DG+ 
Sbjct: 19  DTIAAIATPLSSSGIGIIRISGPEAIDIASEVFRPKREKDIKKAATYTAHYGHAVKDGKD 78

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ +L++   P S+T ED AE + HGG+ V+  IL  + +    R A PGEF++RAF N
Sbjct: 79  IDECILLIMKGPHSYTAEDVAEINCHGGVVVMKKILSCIIE-AGARPAEPGEFTKRAFLN 137

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL  AE++ DLI S+ E     S++ + G LS        ++ H  +FIE+ LD  E
Sbjct: 138 GRIDLSRAEAVMDLIHSKNEFAMETSLKQLKGSLSEKIRSLRKEIVHSVAFIESALDDPE 197

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              V  FS +++   +   ++DI  ++     G I++ G    I+G  NAGKSS+ N L 
Sbjct: 198 HYSVDGFS-EQLKVQVEHARDDIQKYLDSSDNGRILKEGIHTAIVGKPNAGKSSILNVLL 256

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRD L   + + G  + + DTAGIR+TDD+VEK G+ +    V  AD
Sbjct: 257 GEERAIVTDIAGTTRDTLEESIQINGIPLNVIDTAGIRDTDDVVEKIGVDKARDSVIKAD 316

Query: 301 LILLLKEIN---SKKEISFPKNID---FIFIGTKSDLYSTYTEE------YDHL--ISSF 346
           L+L + + +   +K++    K ++    I +  KSDL +  +E       + ++  +S+ 
Sbjct: 317 LVLYVVDTSVPLTKEDEEIMKLLNGKQVIVLLNKSDLETKVSESEFLDRGFQNIVPVSAK 376

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402
           +  GLE+L  +I  +  N   ++ F+     ++ RH   L+     L++   + +D    
Sbjct: 377 SLYGLEDLYERINDLFFN--GRVSFNDEVYITNMRHKKALANAKDSLDLVLKSIEDRMPE 434

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  + +L  A   LG I G    E L++ IF++FC+GK
Sbjct: 435 DFFSIDLMDAYEELGYIIGESVGEDLVNEIFAEFCMGK 472


>gi|295087115|emb|CBK68638.1| tRNA modification GTPase trmE [Bacteroides xylanisolvens XB1A]
          Length = 465

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 152/468 (32%), Positives = 249/468 (53%), Gaps = 37/468 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI---- 60
           ++TI A++T A   AI  IR+SGP    +   I K  K     +  + +    GRI    
Sbjct: 3   QDTICAIAT-AQGGAIGSIRVSGPEAISITGSIFKPAKAGKLLSEQKPYTLTFGRIYDGD 61

Query: 61  --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EMIDEVLVSLFRAPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +      + S ++    +G  I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298

Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLYSTYTEE-YDHLISSFT 347
            A+++L ++  +N+  +I        P+      I +  K+DL     +E    L+  F 
Sbjct: 299 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENVLSLLKDFP 358

Query: 348 GEGLEEL-INKIKSILSNKFKKLPFS------------IPSHKRHLYHLSQTVRYLEMAS 394
            E  E + I+  +   +++ +K+               I ++ RH   L++ +  +    
Sbjct: 359 KESTESIFISAKQRKNTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 418

Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L+ +  G D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 419 NGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|260171369|ref|ZP_05757781.1| tRNA modification GTPase TrmE [Bacteroides sp. D2]
 gi|315919680|ref|ZP_07915920.1| tRNA modification GTPase TrmE [Bacteroides sp. D2]
 gi|313693555|gb|EFS30390.1| tRNA modification GTPase TrmE [Bacteroides sp. D2]
          Length = 465

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 249/468 (53%), Gaps = 37/468 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG--LDG- 58
           ++TI A++T A   AI  IR+SGP    +   I K  K       +      FG   DG 
Sbjct: 3   QDTICAIAT-AQGGAIGSIRVSGPEAISITGSIFKPAKTGKLLSEQKPYTLTFGRIYDGD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EMIDEVLVSLFRAPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAKPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +      + S ++    +G  I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298

Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLYSTYTEE-YDHLISSFT 347
            A+++L ++  +N+  +I        P+      I +  K+DL     +E    L+  F 
Sbjct: 299 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENLLSLLKDFP 358

Query: 348 GEGLEEL-INKIKSILSNKFKKLPFS------------IPSHKRHLYHLSQTVRYLEMAS 394
            E  E + I+  +   +++ +K+               I ++ RH   L++ +  +    
Sbjct: 359 KESTESIFISAKQRKNTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 418

Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L+ +  G D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 419 NGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|78224743|ref|YP_386490.1| tRNA modification GTPase TrmE [Geobacter metallireducens GS-15]
 gi|123570636|sp|Q39PQ9|MNME_GEOMG RecName: Full=tRNA modification GTPase mnmE
 gi|78195998|gb|ABB33765.1| tRNA modification GTPase trmE [Geobacter metallireducens GS-15]
          Length = 457

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 148/465 (31%), Positives = 242/465 (52%), Gaps = 40/465 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGR- 59
           ++TI A+ T      I IIR+SGP    +   I ++        S R+++G     + R 
Sbjct: 4   EDTIAAIGTPVGEGGIGIIRVSGPDVPAIARRIVRRVNENGDFVSHRFYYGTVVDPESRD 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ + ++  +P SFT ED  E   HGG  V   +L+ + +    R A PGEF+RRAF 
Sbjct: 64  TVDEVMAVLMRAPRSFTREDVLEIQCHGGYLVTRRVLDAVLQC-GARPAEPGEFTRRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL++AE++ D+I S+TE    L+     G LS         L H  + +EA +DF 
Sbjct: 123 NGRIDLVQAEAVIDVIRSKTEAALNLAQHQREGRLSERLKAVQGCLRHSLALVEAFIDFP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           ++E V   S  E+          I   +     G ++R+G  ++I G  N GKSSL N L
Sbjct: 183 DDE-VDPASRVEIEAKAREASGRIEELLEGFDEGRVLRDGVSVLIAGKPNVGKSSLLNTL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVT +PGTTRD++   +++ G  +++ DTAGIRET+D+VE+EG++ T  ++  A
Sbjct: 242 LQEKRAIVTSVPGTTRDIIEEVVNVRGLPLRMLDTAGIRETEDVVEQEGVRLTLEKIPQA 301

Query: 300 DLILLLK------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEE------YDHLISSFT 347
           DLIL +       + + +  ++       I +  KSDL  T          +   IS+ T
Sbjct: 302 DLILFVLDGSRPFDDDDRMILAALAERRVIVVTNKSDLPVTLRIPGELEGVHTVAISTAT 361

Query: 348 GEGLEELINKI-------KSILSNKFKKLPFSIPSHKRHLYHLSQ-----TVRYLEMASL 395
           G G+++L   +       ++I S ++  L     S  RH   L +      V +  +A+ 
Sbjct: 362 GAGIDDLREAVFETFIHGRAIDSREYVAL-----SQTRHRDALVKARGRIAVFFANLAAG 416

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           N+    L+I+A +LR A  ++G++TG    + +L++IF +FCIGK
Sbjct: 417 ND----LEILAVDLRDALDAVGEVTGETTPDDILELIFQRFCIGK 457


>gi|254494883|ref|ZP_01052239.2| tRNA modification GTPase, ThdF family [Polaribacter sp. MED152]
 gi|213690465|gb|EAQ41667.2| tRNA modification GTPase, ThdF family [Polaribacter sp. MED152]
          Length = 467

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 157/472 (33%), Positives = 254/472 (53%), Gaps = 47/472 (9%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL---D 57
           + +TI A++T +   AIS+IRLSG     + +      KK K    + +     G    +
Sbjct: 8   KNDTIIALATPSGVGAISVIRLSGDKAITIADSFFKSIKKDKKLTDQKTHTIHLGHIVNN 67

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ILD+ L+ VF +P S+TGE+  E   HG   +   I++   K    R+A+ GEF+ RA
Sbjct: 68  GLILDEVLVSVFKNPNSYTGENVVEISCHGSTYIQQEIIQLFLK-NGCRMADNGEFTMRA 126

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSME----GMSGELSSLYGQWIDKLTHIRSFIE 173
           F NGK+DL +AE++AD+I+S +E    ++++    G+S EL  L GQ +D      + IE
Sbjct: 127 FLNGKMDLSQAEAVADVIASNSEASHVMAIQQMRGGISNELKELRGQLLD----FAALIE 182

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
            +LDFS E DV+ F+ +    +++  + + +   I     G  ++NG  + I+G  N GK
Sbjct: 183 LELDFSGE-DVE-FADRTKFKELVAKITHVLKRLIDSFSFGNAMKNGIPVAIIGEPNVGK 240

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           S+L NAL  ++ AIV+DI GTTRD +  +L +EG   +  DTAGIR+T+DIVE  GIK+ 
Sbjct: 241 STLLNALLNEERAIVSDIAGTTRDAIEDELIIEGVAFRFIDTAGIRKTEDIVENIGIKKA 300

Query: 293 FLEVENADLILLLKEINSKK-----------EISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           + + ENA LI+ L +  S+            +  FP N   + +  K DL    TEE + 
Sbjct: 301 YEKAENAQLIIFLIDAKSENKENRLAEIEAIQQRFP-NKKLLVVANKIDLIP--TEELEQ 357

Query: 342 L---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
           L         +S+    G++EL  ++ S+++        +I ++ RH   L+  +  + +
Sbjct: 358 LKSNIDNLMPLSAKNNVGIDELKQELTSLVNIGALSNNETIVTNSRHFEALNNAL--IAI 415

Query: 393 ASLNEK---DCGLDIIAENLRLASVSLGKITGCVDVEQ-LLDIIFSKFCIGK 440
           +S+ +    +   D+ + ++R     LG ITG  DV++ +L  IFS FCIGK
Sbjct: 416 SSVQKGIDLEISTDLFSIDIRECLRHLGAITGDYDVDKDILGHIFSNFCIGK 467


>gi|296284831|ref|ZP_06862829.1| tRNA modification GTPase TrmE [Citromicrobium bathyomarinum JL354]
          Length = 377

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 140/384 (36%), Positives = 208/384 (54%), Gaps = 19/384 (4%)

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L++ FP P + TGED AE H HGG AV+  I   L    +LR A  GEF+RRAF N
Sbjct: 9   LDEALVLWFPGPNTATGEDCAEIHCHGGRAVIRAIETALETGCSLRRAEAGEFTRRAFLN 68

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DLLEAE+L D++S+ETE+QR +      G  SS   +W D++    + +E +LDFS+
Sbjct: 69  GRMDLLEAEALGDMLSAETELQRAVLASSAGGAASSRLAEWRDEVLAASAAVEQELDFSD 128

Query: 181 EE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           ++  D+     +  L  I    +   +  S  +L    R+G +IV+ G  NAGKSSLFNA
Sbjct: 129 DDQGDLPPAPWRGALEGIASQMDQWLATPSADRL----RDGLRIVLAGPPNAGKSSLFNA 184

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVE 297
           +  +  AIV+ I GTTRDV+   + L G    + DTAG+R E  D +E+ GI R   E+ 
Sbjct: 185 VLDEAAAIVSPIAGTTRDVIERPIALGGVPFLLVDTAGLRGEGGDEIEQLGIMRAEGELG 244

Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELIN 356
            AD+IL L       E   P   + + + + SDL     + E    +SS T +GL +LI 
Sbjct: 245 RADIILWL-----GPEGEGPA--EALEVASMSDLEDAARKGEGAFHVSSTTRDGLADLIA 297

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
            + ++   +  K P  +   +R    L+     +  A++ +    L I  E LR A  ++
Sbjct: 298 HLVALGRERLPK-PGQVAVSRRQKERLADARESIRRAAIEDD---LLIAGEALRQARHAM 353

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
             + G V  E +LD +F +FCIGK
Sbjct: 354 DAMLGTVATEDMLDALFGRFCIGK 377


>gi|160882059|ref|YP_001561027.1| tRNA modification GTPase TrmE [Clostridium phytofermentans ISDg]
 gi|189036198|sp|A9KLX9|MNME_CLOPH RecName: Full=tRNA modification GTPase mnmE
 gi|160430725|gb|ABX44288.1| tRNA modification GTPase TrmE [Clostridium phytofermentans ISDg]
          Length = 458

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 159/471 (33%), Positives = 250/471 (53%), Gaps = 52/471 (11%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-----SLRYFFGLDGR- 59
           +TI A++TG   + ISI+R+SG   F V + I + K    R +     ++ Y + +D   
Sbjct: 4   DTIAAIATGLSNAGISIVRISGDQAFAVIDKIFQTKSKAKRLSEMDSHTVHYGYIVDEEE 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ ++I+  +P S+T EDS E   HGGI V   +LE + K    R+A PGEF++RAF 
Sbjct: 64  IIDEVMVIIMRAPRSYTMEDSIEIDCHGGITVTKKVLEAVLK-AGARIAEPGEFTKRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR-------SFI 172
           NG+IDL +AE++ D+I +  E+  + SM+        L G  + K+  +R       ++I
Sbjct: 123 NGRIDLSQAEAVIDVIHANNELALKNSMK-------QLKGNVLHKVKDVRHSIILDTAYI 175

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LD  E   ++ FS K   N I  +K ++S  I+  + G +I+ G + VILG  NAGK
Sbjct: 176 EAALDDPEHISLEGFSDKLRDNVIGSIK-ELSELINTSENGRMIKEGIRTVILGRPNAGK 234

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N +  ++ AIVT+I GTTRD +   + L G  + + DTAGIRET D+VEK G++++
Sbjct: 235 SSLLNLMVGEERAIVTEIAGTTRDTIEETVFLNGLCLNLIDTAGIRETSDLVEKLGVEKS 294

Query: 293 FLEVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
               + ADLI+ + + ++      K+ + F K+   I +  KSDL S   EE  +L+++ 
Sbjct: 295 LKSAKEADLIICVIDASTPLNQDDKEILEFIKDRKAIVLLNKSDLDSVIEEEKINLLTN- 353

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIP----------------SHKRHLYHLSQTVRYL 390
                 + I KI +I     K L  +I                 ++ RH   L +    L
Sbjct: 354 ------KPILKISAIDQTGIKDLEQTITEMFFEGNISFNDEIYITNMRHKNALVEAKVSL 407

Query: 391 EMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E   ++ E +   D  + +L  A   LG I G    E L++ IF +FC+GK
Sbjct: 408 EQVIVSIENEMPEDFFSIDLMNAYEILGTIIGESVDEDLVNTIFKEFCMGK 458


>gi|189460549|ref|ZP_03009334.1| hypothetical protein BACCOP_01190 [Bacteroides coprocola DSM 17136]
 gi|189432793|gb|EDV01778.1| hypothetical protein BACCOP_01190 [Bacteroides coprocola DSM 17136]
          Length = 487

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 152/490 (31%), Positives = 249/490 (50%), Gaps = 55/490 (11%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--- 55
           +   ++TI A++T A   AI  IR+SG     + +  F     KP   +      FG   
Sbjct: 3   IQQTEDTICAIAT-AQGGAIGTIRVSGAQAIAITDRIFTPISGKPLTERKPYTLTFGHIL 61

Query: 56  -LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
              G I+D+ L+ +F  P S+TGEDS E   HG   ++  +++ L K    R A PGE++
Sbjct: 62  SPAGEIIDEVLVSLFRVPHSYTGEDSVEISCHGSSYILQQVMQLLIK-NGCRAAGPGEYT 120

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    R++M  M G  S       +KL H+ S +E 
Sbjct: 121 QRAFLNGKMDLSQAEAVADLIASTSAATHRMAMNQMRGGFSRELSALREKLLHLTSLMEL 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSH-ISQGKLGEIIRNGYKIVILGHSNAGKS 233
           +LDFS+ E+++ F+ +  L +I      + SH +    +G  ++NG  + I+G +NAGKS
Sbjct: 181 ELDFSDHEELE-FADRSELEEIAQQIEQVISHLVDTFSVGNALKNGVPVAIVGETNAGKS 239

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           +L NAL  ++ AIV+DI GTTRDV+   ++L G   +  DTAGIRET D +E  GI+R+F
Sbjct: 240 TLLNALLNEERAIVSDIHGTTRDVIEDTMNLGGVTFRFIDTAGIRETTDTIESLGIERSF 299

Query: 294 LEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
            ++E A+++L + +    +E         +   +    + +  K+DL    TE+      
Sbjct: 300 QKLEQANIVLWVIDATCAEEQYHQLAEKILPRCQGKHLVIVLNKTDLLP-LTEKSLSCSV 358

Query: 345 SFTGEGLEELINKIKSILSN--------------------------KFKKLP-----FSI 373
           + T   + + I+ +K+IL +                           F  LP       +
Sbjct: 359 TDTTASMHKPIDDLKAILPDLPEDACVISLSAKQKEGLSLLQKQLVDFAALPDLSQNDVV 418

Query: 374 PSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLD 430
            S+ RH   LS+ +  +      L  +  G D+++++LR     L +I G  +  +++L 
Sbjct: 419 VSNIRHYEALSRALEAIHRVQDGLTMQLSG-DLVSQDLRECLFHLAEIVGGEITNDEVLG 477

Query: 431 IIFSKFCIGK 440
            IF  FCIGK
Sbjct: 478 NIFKHFCIGK 487


>gi|157164829|ref|YP_001466649.1| tRNA modification GTPase TrmE [Campylobacter concisus 13826]
 gi|205829127|sp|A7ZCZ1|MNME_CAMC1 RecName: Full=tRNA modification GTPase mnmE
 gi|112800067|gb|EAT97411.1| tRNA modification GTPase TrmE [Campylobacter concisus 13826]
          Length = 441

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 234/447 (52%), Gaps = 20/447 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T     ++SI+RLSG         + K     PR A L   + +D  ILD+G+
Sbjct: 3   ETIAALATAYGIGSVSIVRLSGKDALATSLKLLKLSNLEPRYAKLAKIYSIDDEILDEGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF  HGG+ V   IL EL +    RLA PGEFS+RAF NGK+DL
Sbjct: 63  VIYFKAPASFTGEDIVEFQTHGGVMVSERILNELIR-AGARLAMPGEFSKRAFLNGKMDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++  LI+S++E+  ++    M G+LS   G+   ++    +F+E  +D+++++   
Sbjct: 122 AKAEAMQGLITSKSEIAAKILTRQMQGDLSKFVGEIRGEVVKTLAFVETMIDYADDDLPA 181

Query: 186 NFSSKEVLNDILFLKN----DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           N   +     ++ LKN    +  + +S+ + G I  +G+KI I+G  N GKSS+ N+   
Sbjct: 182 NLLEQ---TKLMLLKNSEKLERIATLSEQRRGLI--DGFKIAIVGKPNVGKSSILNSFLA 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            + AIV+D  GTTRD +  +  +  +LV+I DTAGIR+    +E+ GI  +   +  AD+
Sbjct: 237 YERAIVSDEAGTTRDRIEENFKIGSHLVRIIDTAGIRKDAGKIEQIGINYSISAINEADI 296

Query: 302 ILLL------KEINSKKEISFPKNID--FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           IL +       +   K+ I    N +    FI  KSDL   +  E D  I          
Sbjct: 297 ILAVFDGSCPSDEQDKEIIRLISNSNKKAFFILNKSDLAFKFDIELDGAIKISAKNDSSV 356

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           ++ +++  L  K +     + S  R +    +    L+ A L   +  L+I A  L  A 
Sbjct: 357 VLKELEGYL--KTQDTDEIMLSSNRQILSCKEASEALKRAFLRLNEEELEIFAYELNSAI 414

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  IT   +  ++LD +FS FC+GK
Sbjct: 415 KALASITKPFERSEILDEMFSHFCLGK 441


>gi|295108622|emb|CBL22575.1| tRNA modification GTPase trmE [Ruminococcus obeum A2-162]
          Length = 457

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 156/459 (33%), Positives = 246/459 (53%), Gaps = 30/459 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKA---SLRYFFGLDGR-I 60
           TI A+ST    S I I+R+SG     V   I + K  K   R+    ++ Y F  DG  +
Sbjct: 4   TIAAISTAMSASGIGIVRISGEKAMDVIANIYRSKNGKKDIREVGSHTIHYGFIYDGEEV 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+++   P ++TGED+ E   HGG+  +  +LE + K   + +A PGEF++RAF N
Sbjct: 64  VDEVLVMIMKGPHTYTGEDTVEIDCHGGVYAMKRVLETVLKNGAI-IAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ D+I ++  M  + S+E + G +     +   +L H  ++IE  LD  E
Sbjct: 123 GRLDLSQAEAVMDVIQAKNSMALKSSVEQLKGSVQKAIREIRARLLHQIAYIETALDDPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D+  +  +E+L  +     +IS+ +     G +I+ G K VILG  NAGKSSL N L 
Sbjct: 183 HFDLTGYP-QELLEIVEKESENISNLLKTADDGRMIQEGIKTVILGKPNAGKSSLLNFLV 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVT+I GTTRD+L   + L G  +++ DTAGIRET+DIVEK G+ +     E+AD
Sbjct: 242 GEDRAIVTEIAGTTRDILEEYISLNGITLRMIDTAGIRETEDIVEKIGVGKAKQMAEDAD 301

Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHL-------ISSF 346
           LIL + +       N ++ +        I I  K+DL +  + EE           +S  
Sbjct: 302 LILYVVDSSLPLDENDREIMELLSGRKSIVIYNKTDLEAAVSIEELKEKTGSPVIPVSVV 361

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401
              GL +L ++I+ +  +   +L F+     ++ RH   L +    L++   S+N     
Sbjct: 362 EETGLRQLEDEIRRMFFH--GELSFNDEVYITNARHKAALEEAKESLKLVKESIN-MGMA 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  + +L  A  SLG+I G    E L++ IFSKFC+GK
Sbjct: 419 EDFFSIDLMSAYESLGRIVGESVGEDLVNEIFSKFCVGK 457


>gi|224372875|ref|YP_002607247.1| tRNA modification GTPase TrmE [Nautilia profundicola AmH]
 gi|223589292|gb|ACM93028.1| tRNA modification GTPase TrmE [Nautilia profundicola AmH]
          Length = 442

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 145/465 (31%), Positives = 243/465 (52%), Gaps = 54/465 (11%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T     AISI+RLSG + +++ + + KK    PR A+L   +     ++D GL
Sbjct: 2   ETIAAIATPNGVGAISIVRLSGDNAYEIAKKLTKKDLT-PRVATLSKLYNNKNELIDIGL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF  HGG+ V   +LE L +    R A PGEF++RAF NGKID 
Sbjct: 61  VIYFKAPNSFTGEDIVEFQCHGGVIVSRLVLETLFEY-GARAAFPGEFTKRAFLNGKIDA 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++A LI + +    +L    + G+L     +  +KL  I ++ E  +D++EE D+ 
Sbjct: 120 SQAEAIAKLIETRSREGAKLLSRQLDGDLGEFVDEVREKLIEIMAYTEVFIDYAEE-DLP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                E+   +  +++ +   +   K  E + +GYKI I+G  N GKSS+ NAL  K  A
Sbjct: 179 ETLGYEIEERLAKIEHLLKHTLEVSKRREGMLSGYKIAIVGKPNVGKSSILNALLNKQRA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-- 303
           IV+DI GTTRD +  D+ +  +L++I DTAGIR   D +EK G++R+   ++ AD++L  
Sbjct: 239 IVSDIAGTTRDTIEEDIQIGSHLIRIIDTAGIRAAKDEIEKIGVERSKEAIKEADIVLAV 298

Query: 304 ---------------LLKE--------INS-----KKEISFPKNIDFIFIGTKSDLYSTY 335
                          ++KE        IN        +IS  +N+  + I  K D+ +  
Sbjct: 299 FDATEFTDEDEQILNIIKESGKDTIIVINKIDKGIDSDISKFENMPVVKISAKEDI-TPL 357

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
            E+   ++ S++GE    LI+                I + ++ L  + ++  +L+    
Sbjct: 358 VEKLKEILDSYSGEDEHVLIS-------------ARQINAVEKALKSIEESKEFLQTGE- 403

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 L++ +  ++ A  ++ +IT   + +++LD +F  FC+GK
Sbjct: 404 ------LELFSYQIQDAIRAISEITKPFEYDEMLDKMFGSFCVGK 442


>gi|225164330|ref|ZP_03726597.1| tRNA modification GTPase TrmE [Opitutaceae bacterium TAV2]
 gi|224801064|gb|EEG19393.1| tRNA modification GTPase TrmE [Opitutaceae bacterium TAV2]
          Length = 508

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 149/489 (30%), Positives = 239/489 (48%), Gaps = 58/489 (11%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T A  SAI++IR SGP+C ++   +     P PR+A+   +  + G++LD  L
Sbjct: 24  DTIAALATPAGTSAIAVIRASGPACAELVAALFPPSPPLPRRATHVDYHDVAGKLLDDVL 83

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +  F  P S+TGEDS E   HG   +   IL +L +    R A  GEF+RRAF NG+IDL
Sbjct: 84  VTWFRGPRSYTGEDSLEIACHGNPLIAQLILADLFQR-GCRPAEAGEFTRRAFLNGRIDL 142

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ DLI + +E     + + + G L        D L  + + IEA +DF +E D+ 
Sbjct: 143 SQAEAVMDLIHARSERALAAANQQLRGSLGRHLATLTDALLLVLARIEAYIDFPDE-DLP 201

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +   + V +++  +    +  ++  + GE++R G K VI+G  NAGKSSL N L  +D A
Sbjct: 202 DEDRRIVADELASVLRGTNQLLATSRYGELLREGIKTVIIGEPNAGKSSLLNRLVGRDRA 261

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           +V+  PGTTRD +   + +  + +++ DTAG+  T   +EK GI +T      ADL L +
Sbjct: 262 LVSPEPGTTRDFIEELIIIGPHALRLIDTAGLNPTPGAIEKLGIDKTLERAAEADLFLWV 321

Query: 306 KEINSKKEISFPKNI-------DFIFIGTKSDLYSTYT---------------------- 336
           ++       + P  I       + I +  K+DL    T                      
Sbjct: 322 QDATLPSP-ALPPEIAARLTPANAIILRNKTDLLERRTSNIERPTSNVQGPVSNAQPNPM 380

Query: 337 ----------------------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS-- 372
                                  E    +S+ TG G +EL + I + L++   +      
Sbjct: 381 QGTDGEAAHSMLDVRCSMFDVRREASLSVSALTGAGFDELASAITT-LADALAQTTGDEL 439

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDIIAENLRLASVSLGKITGCVDVEQLLDI 431
           I  + RH   L + +  L  A L        +++A +LR A  +LG+I G +D E++LD 
Sbjct: 440 IAINARHADALRRALDCLTAAQLKLSSVAPTELLASDLRGALDALGEIAGKIDNERMLDH 499

Query: 432 IFSKFCIGK 440
           +F+ FCIGK
Sbjct: 500 LFATFCIGK 508


>gi|323307689|gb|EGA60952.1| Mss1p [Saccharomyces cerevisiae FostersO]
          Length = 484

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 145/410 (35%), Positives = 222/410 (54%), Gaps = 56/410 (13%)

Query: 4   EKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGR-- 59
           ++ TI+A+ST A   SAI+IIR+SG    +     +     P  RK  LR  +       
Sbjct: 35  QQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKXILRNIYSPSSCSV 94

Query: 60  ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103
                     +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  +       
Sbjct: 95  KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
           ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W +
Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214

Query: 164 KLTHIRSFIEADLDFSEE--EDVQNFSSKEVLND----ILFLKNDISSHISQGKLGEIIR 217
            +    + + A +DF+++  +++QN  + E+ +D    I+ L++ I + + + +   I++
Sbjct: 215 TIIENMAQLTAIIDFADDNSQEIQN--TDEIFHDVEKNIICLRDQIVTFMQKVEKSTILQ 272

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAGI
Sbjct: 273 NGIKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGI 332

Query: 278 RE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIF 324
           RE + D +E  GI+R   +   +DL L + +     ++  P++I              I 
Sbjct: 333 REKSSDKIEMLGIERAKKKSVQSDLCLFIVDPTDLSKL-LPEDILAHLSSKTFGNKRIII 391

Query: 325 IGTKSDLYST--YTEEYDHL------------ISSFTGEGLEELINKIKS 360
           +  KSDL S    T+  + L            +S  T EG+E LI+ + S
Sbjct: 392 VVNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLISTLTS 441


>gi|323342292|ref|ZP_08082524.1| tRNA modification GTPase TrmE [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463404|gb|EFY08598.1| tRNA modification GTPase TrmE [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 446

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 137/447 (30%), Positives = 244/447 (54%), Gaps = 18/447 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRILD 62
           +TI A+ T    SAI+++R+SG     +   I  +        ++ Y   +D    +++D
Sbjct: 6   DTIVAIITALQESAINVLRISGVDAIDIVNQIFSRDLEHVDSHTVHYGHIIDPVNKQVVD 65

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+ VF +P ++T ED  E   HGG+ V   +L  L      R+A PGE+++RAF NG+
Sbjct: 66  EVLVSVFRAPRTYTREDVVEISCHGGVLVTKKVLS-LCLSVGARMAEPGEYTQRAFLNGR 124

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AES+ +LI +  E  + L++ G+ G +  L   ++++L  + + IE ++D+ E +
Sbjct: 125 IDLSQAESVMELIQAPNEFAQELAISGVQGNVRKLIEPFLERLIQMIANIEVNIDYPEYD 184

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV+  +   +L +      D+   + + + G I++ G K VILG  N GKSS+ N L ++
Sbjct: 185 DVEVLTEAVILPEAKRFLEDLGKILKESQSGRIMKEGVKTVILGKPNVGKSSILNVLLEE 244

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVT+I GTTRD++   + LE   + + DTAG+R+T D +E+ GI+++   +E+A+L+
Sbjct: 245 DKAIVTEIAGTTRDLVEGWIRLENVALHLIDTAGLRDTGDRIEQIGIEKSRKALESAELV 304

Query: 303 LLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           +++ + +  ++      +   K+ + I +  K DL +    E D L  S     + EL++
Sbjct: 305 IVVFDASQARDQEDIDLLEATKHKERIIVYNKKDLVN---REPDGLYVSALEGDVHELVD 361

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG--LDIIAENLRLAS 413
           +I        K L     S++RH+  + ++  YL M  +L   + G  LD++  +L  + 
Sbjct: 362 EINKRYVEHTKALTKPTLSNERHIAQVQKS--YLAMQRALEALEFGMELDLVTIDLNESY 419

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
           V L  I        +LD IF++FC+GK
Sbjct: 420 VELASIIKPKKDINVLDEIFARFCLGK 446


>gi|237722682|ref|ZP_04553163.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_2_4]
 gi|229448492|gb|EEO54283.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_2_4]
          Length = 465

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 152/468 (32%), Positives = 251/468 (53%), Gaps = 37/468 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG--LDG- 58
           ++TI A++T A   AI  IR+SGP    +   I K  K       +      FG   DG 
Sbjct: 3   QDTICAIAT-AQGGAIGSIRVSGPEAISITGSIFKPAKTGKLLSEQKPYTLTFGRIYDGD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ L+ +F +P S+TGEDS E   HG   ++  +++ L +    R+A PGE+++RAF
Sbjct: 62  EIIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIE-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S    +  +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSRELTELRNKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +      + S ++    +G  I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+D+ GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDVHGTTRDVIEDTINIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298

Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLYSTYTEE-YDHLISSFT 347
            A+++L ++  +N+  +I        P+      I +  K+DL     +E    L+  F 
Sbjct: 299 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENLLSLLKDFP 358

Query: 348 GEGLEEL-INKIKSILSNKFKKLPFS------------IPSHKRHLYHLSQTVRYLE--M 392
            E  E + I+  +   +++ +K+               I ++ RH   L++ +  +    
Sbjct: 359 KESTESIFISAKQRENTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 418

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + L+ +  G D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 419 SGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|253569670|ref|ZP_04847079.1| tRNA modification GTPase mnmE [Bacteroides sp. 1_1_6]
 gi|251840051|gb|EES68133.1| tRNA modification GTPase mnmE [Bacteroides sp. 1_1_6]
          Length = 465

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 155/471 (32%), Positives = 248/471 (52%), Gaps = 43/471 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI---- 60
           ++TI A++T A   AI  IR+SGP    +   I +  K     +  + +    GRI    
Sbjct: 3   QDTICAIAT-AQGGAIGSIRVSGPEAISITSRIFQPAKAGKLLSEQKPYTLTFGRIYNGE 61

Query: 61  --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EVIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S        KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRSKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +   ++  IS  +    +G  I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLVHSFNVGNAIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTINIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298

Query: 298 NADLILLL-------KEINSKKEISFPK--NIDFIFIGTKSDLY-STYTEEYDHLISSFT 347
            A+++L +        +I    E   P+      I +  K+DL      EE   L+  F 
Sbjct: 299 QAEIVLWMVDSSDASSQIKQLSEKIIPRCEEKQLIVVFNKADLIEEKQKEELSALLKDFP 358

Query: 348 GEGLEEL-INKIKSILSNKFKKLPFSIPSHKRHLYHLSQ------TVRYLEMAS-----L 395
            E  + + I+  +   +++ +K+  +      HL  ++Q       VR+ E+ S     +
Sbjct: 359 KEYTKSIFISAKERKQTDELQKMLINAA----HLPTVTQNDIIVTNVRHYEVLSKALDAI 414

Query: 396 NEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +    GL      D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 415 HRVQDGLETHISGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|50364829|ref|YP_053254.1| tRNA modification GTPase TrmE [Mesoplasma florum L1]
 gi|81392031|sp|Q6F2A3|MNME_MESFL RecName: Full=tRNA modification GTPase mnmE
 gi|50363385|gb|AAT75370.1| tRNA modification GTPase [Mesoplasma florum L1]
          Length = 452

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 160/472 (33%), Positives = 253/472 (53%), Gaps = 52/472 (11%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59
           MN+  +TI A +T     AIS+IR+SG   F +   + K K    +   +R  F  DG+ 
Sbjct: 1   MNNLNQTIVAPTTNISTQAISLIRISGDDSFNIINKLLKTKIKEEKNVWVRKMF--DGQE 58

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ ++  F SP SFTGE+  E   HGGI     I+  + K    R+AN GEFS+RAF 
Sbjct: 59  LVDEVVITSFVSPASFTGENVVEIACHGGILNTQRIINLIIK-NGARMANKGEFSQRAFL 117

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEAD 175
           N KIDL++AE + DLI ++ E+  ++ +  MSG     + +L G  +D    I S I+  
Sbjct: 118 NNKIDLIQAEGINDLIFAKNELALKIGVNNMSGAHNQSIINLKGNLLD----IISRIQVS 173

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ + +DV+  S  E+   +  +  ++++ + + K+     NG K  I+G +N GKSSL
Sbjct: 174 IDYPDYDDVEGSSIPELAKALSGINEEVNNLLKRSKMAIKNTNGIKTAIVGKTNVGKSSL 233

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  +D AIVTDI GTTRD++T +++LE   + + DTAGIRET DIVE  GI+++   
Sbjct: 234 LNALLNEDKAIVTDIHGTTRDIVTGEINLENISLNLIDTAGIRETTDIVEGLGIEKSLKI 293

Query: 296 VENADLILLL---KEINSKK-EISFPK--NIDFIFIGTKS------------DLYSTY-- 335
           ++ A+L+L +   K IN ++ ++ F K  N ++I +  KS            DL++ +  
Sbjct: 294 IDEAELVLFVVDFKSINDEENKMIFDKLENKNYILVFNKSEFINDIERNKIKDLHNNFVY 353

Query: 336 ----TEEYDHLISSFTGEGL-EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                 + D+LI       + EE+IN    IL N             + +  + Q    L
Sbjct: 354 TSAINNDIDNLIMKIEQMHINEEIINNDSLILIN------------LQQITLVEQVKDRL 401

Query: 391 EMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E  SLN    G+  DI+  +L  A   L ++ G    E+++D IF K+C+GK
Sbjct: 402 E-KSLNAIIGGMPIDIVNVDLHEAWDYLNQLIGEQYDEEIIDNIFKKYCLGK 452


>gi|317500879|ref|ZP_07959091.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897759|gb|EFV19818.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 465

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 248/478 (51%), Gaps = 57/478 (11%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGRI-- 60
           KETI A+STG   S I I+R+SG     V + I + KK     +  ++ Y + +D  I  
Sbjct: 3   KETIAAISTGMTNSGIGIVRISGEEAVLVADRIYRGKKKLCEVKSHTINYGYIVDREISS 62

Query: 61  --------LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
                   +D+ L+ V  +P +FTGED+ E + HGG  VV  +LE + K      A PGE
Sbjct: 63  AEKKSEEVIDEVLVTVMKAPGTFTGEDTVEINCHGGTFVVKKVLELVLK-NGASPAEPGE 121

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NGK+DL +AE++ D+I+SE E   + S+  + G +        +K+ +  +FI
Sbjct: 122 FTKRAFLNGKMDLSQAEAVIDVINSENEYALQSSVSQLKGSVKKKINDIREKIIYHTAFI 181

Query: 173 EADLDFSEEEDVQNFS------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
           E  LD  E   V  +S      ++E++ ++  L       I     G +I+ G K VI+G
Sbjct: 182 ETALDDPEHISVDGYSDTLRSSAEEIIQELERL-------IHSADDGRVIKEGIKTVIVG 234

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             NAGKSSL N LA  + AIVTDI GTTRDVL   + L G  + + DTAGIR+T+D++EK
Sbjct: 235 KPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGGLNLNVVDTAGIRQTEDLIEK 294

Query: 287 EGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
            G+ +     E ADLI+ + +       N +K I+   +   I +  KSD+ +  + E  
Sbjct: 295 IGVDKALEYAETADLIIYVVDASRSLDENDEKIINMISDKKSIVLLNKSDIDTVISAE-- 352

Query: 341 HL-----------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           H+           IS+    G+++L +K+K +    F K   S  + + ++ ++ Q    
Sbjct: 353 HIKEKVSNIPIISISAKEERGIKDLEDKVKEM----FLKGDISF-NDQVYISNVRQKNAL 407

Query: 390 LEMASLNEK-------DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LE     +K       +   D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 408 LEALESMKKVIRSIDDNMPEDFYSIDLMDAYESLGYITGNSVGEDLINEIFSKFCMGK 465


>gi|258569587|ref|XP_002543597.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237903867|gb|EEP78268.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 571

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 116/315 (36%), Positives = 184/315 (58%), Gaps = 28/315 (8%)

Query: 18  SAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFF-----GLDGRILDKGLLIV-FP 70
           +AI+I+R+SGP+C Q+ + +      P PR ASLR  +          +LD G L++ FP
Sbjct: 21  AAIAIVRISGPACPQIYKGLSFDSSLPKPRYASLRTLYEPGKPPSTNTVLDSGALVLYFP 80

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAK----------MPNLRLANPGEFSRRAFEN 120
           +P++ TGED  E H+HG  AV+  +L  + K           P++R A PGEF+RRAF N
Sbjct: 81  APKTVTGEDVLELHIHGSPAVIKAVLNAIPKCAGNGSEAGSQPSIRYAEPGEFTRRAFLN 140

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            ++DL + E+L + ++++TE QRRL++ G S  LS+ Y  W  +L + R  +EA +DFSE
Sbjct: 141 NRLDLPQIEALGNTLAADTEQQRRLAVRGTSDTLSARYEDWRQQLLYARGELEALIDFSE 200

Query: 181 ----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
               +E V +F    +   +  L N I+ HI     GE++R+G K+ +LG  NAGKSSL 
Sbjct: 201 DQHFDESVDDF-MLSITKQVRKLLNQINVHIENASKGELLRSGIKVALLGAPNAGKSSLL 259

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI------VEKEGIK 290
           N +  ++ AIV+   GTTRD++ + +DL+   ++ + +  I ETD+       VE+EGI+
Sbjct: 260 NRIVGREAAIVSSEEGTTRDIVDVGVDLDMAGLRSTPSKVIGETDNTSVIIGEVEREGIR 319

Query: 291 RTFLEVENADLILLL 305
           R       +DL++ +
Sbjct: 320 RAKARALESDLVIAV 334


>gi|291529193|emb|CBK94779.1| tRNA modification GTPase trmE [Eubacterium rectale M104/1]
          Length = 458

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 157/462 (33%), Positives = 250/462 (54%), Gaps = 30/462 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-----RKASLRYFFGLDG 58
           + +TI A++T   PS I IIR+SG     V + I K K         +  ++ Y F  DG
Sbjct: 2   QNDTIAAIATAMSPSGIGIIRISGDDALSVIDRIYKSKNNKKKISACQSHTIHYGFIYDG 61

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ ++++  +P ++T ED+ E   HGG+ V+  +LE + K    R A PGEF++RA
Sbjct: 62  DEKIDEVMVLLMKAPNTYTREDTVEIDCHGGVYVMKRVLEAVIK-NGARPAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D+I+S+ +   + S+  + G +     Q  ++L H  +FIE+ LD
Sbjct: 121 FLNGRIDLSQAESVIDVINSKNDFALKSSLSQLGGAVLGSIRQIREQLLHEIAFIESALD 180

Query: 178 FSEEEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
             E   +  +  K   + D  +++  I S +     G I++ G   VI+G  NAGKSSL 
Sbjct: 181 DPEHISLDGYPQKLRAIVDNEYVE--IDSLLKTSDNGRILKEGINTVIIGKPNAGKSSLL 238

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L   D AIVTDI GTTRDVL   +++ G  + + DTAGIR T+D+VEK G+K+     
Sbjct: 239 NVLVGSDRAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDVVEKIGVKKAMEHA 298

Query: 297 ENADLIL------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLISS 345
             ADLI+      ++ + N    I+F K+   + +  KSDL S  + +      D  + S
Sbjct: 299 NEADLIIYVVDSSVVFDDNDYDIINFIKDKKAVILLNKSDLASKVSADDIKKLVDKTVIS 358

Query: 346 FTGE---GLEELINKIKSILSN---KFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            + +   G++EL + IK +  +    F  ++  +   HK+ L    ++++ L M S+++ 
Sbjct: 359 VSAKESSGIDELSDTIKEMFFDGQVSFNDEIYITNIRHKKLLSDAKESLK-LVMNSIDD- 416

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D   D  + +L  A  SLG I G    + L+D IFSKFC+GK
Sbjct: 417 DMPEDFYSIDLMSAYESLGLIIGESVEDDLMDEIFSKFCMGK 458


>gi|5174779|gb|AAD40696.1| 50 kDa protein [Caulobacter crescentus CB15]
          Length = 331

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 193/338 (57%), Gaps = 26/338 (7%)

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE +ADLI +ETE QRR ++  + G LS  Y +W D L    + +EA +DF +E
Sbjct: 1   KLDLAQAEGVADLIDAETEAQRRQALGQVGGALSQRYDRWRDLLVQALAMLEAAVDFPDE 60

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D+    ++     +  L  ++++ ++    G  +R+G++I ++G  NAGKS+L N LA+
Sbjct: 61  -DLPEEVAERARPGLRQLSAELNAALADVSRGRRVRDGFRIALIGAPNAGKSTLLNGLAE 119

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVTD+ GTTRDV+ + L L GY V ++DTAGIRET D++E EG++R     E ADL
Sbjct: 120 RDAAIVTDVAGTTRDVIEVPLVLGGYKVLVADTAGIRETADVIEAEGVRRAKAWAEAADL 179

Query: 302 ILLLKE-INSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTGEGL------ 351
            L + +  + K+  + P+ I   D++ +  K+D+     +   H+   + GEGL      
Sbjct: 180 RLWVVDGFHVKQADARPEAIRVGDWLIL-NKTDIAD--ADASAHVAERWAGEGLTVLHIA 236

Query: 352 -------EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
                  E L   + S +++      F   +  RH   LS+   YLE A     D GL++
Sbjct: 237 GTSAEGPEALRAALASHVADALSGAEFPAATRLRHAERLSEARSYLERAL---SDVGLEV 293

Query: 405 --IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              AE++RLA+ +L +I+G +D E +L  +FS FCIGK
Sbjct: 294 ELAAEDVRLAARALERISGRIDPEDVLGRVFSTFCIGK 331


>gi|237750079|ref|ZP_04580559.1| tRNA modification GTPase mnmE [Helicobacter bilis ATCC 43879]
 gi|229374266|gb|EEO24657.1| tRNA modification GTPase mnmE [Helicobacter bilis ATCC 43879]
          Length = 450

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 152/453 (33%), Positives = 241/453 (53%), Gaps = 24/453 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP----FPRKASLRYFFGLDGRILD 62
           TI A+S+    SAISIIRLSG     +   + KK        PRKA+L   +   G +LD
Sbjct: 3   TIVAISSALAKSAISIIRLSGDEALHIASKLLKKDALESLLIPRKATLHRIYNEKGEMLD 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           K ++I F SP+SFTGED  EF  HGGI V N IL+         LA  GEFS RA  N K
Sbjct: 63  KAIVIYFKSPKSFTGEDIVEFQSHGGILVANEILKACLAF-GATLAKAGEFSMRALRNNK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL+E E+   LI++      +L    + G+LS +      ++ +I + IE ++D+SEE+
Sbjct: 122 LDLVELEATLALINNTNTNLTKLLTRNIDGKLSEMLESVRQEILNIIAQIEVNIDYSEED 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
             ++  SK V + +L ++    + +   +  + +++  K+ I+G  N GKSSL N L  +
Sbjct: 182 LDKDILSKSV-STLLSIQARFQAILDSSRHYQKLQD-IKLCIIGKPNVGKSSLLNLLLMQ 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIV+DI GTTRD +T  LD+ G LV ++DTAGI  + D +E +GI+++      +++I
Sbjct: 240 DRAIVSDIAGTTRDTITAVLDICGNLVSLTDTAGIHTSTDSIEMQGIEKSMKSARESEII 299

Query: 303 LLLKEIN---SKKE---ISFPK----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           L + +I+   SK++   + F K    N   + +  K+DL    T ++     + T    +
Sbjct: 300 LCVFDISKPMSKEDFEILDFLKSECSNKSVLIVLNKNDLARQNTHDFTPF-QTITLNTKD 358

Query: 353 E-----LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           E     L  KI + L+ +     F + ++      L    + L +A     +  L++ + 
Sbjct: 359 ENNARLLKEKIANFLTMEIDNNTF-VLTNATQSNLLESACKNLSIAKELLMNGSLELASF 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L  +  SLG +T   DVE +LD +FS+FC+GK
Sbjct: 418 ELHQSLQSLGSMTKPYDVEDMLDSMFSQFCVGK 450


>gi|210624042|ref|ZP_03294159.1| hypothetical protein CLOHIR_02111 [Clostridium hiranonis DSM 13275]
 gi|210153249|gb|EEA84255.1| hypothetical protein CLOHIR_02111 [Clostridium hiranonis DSM 13275]
          Length = 462

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 156/460 (33%), Positives = 247/460 (53%), Gaps = 30/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFG--LDG 58
           +TI A++T      I IIR+SGP   +V E I      KK   +P +      FG   DG
Sbjct: 8   DTIAAIATAPGEGGIGIIRISGPKSLEVAEEIFFSMSGKKISEYPART---LIFGNIKDG 64

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+ L+     P S+T ED  E + HGG   V  ILE L    ++RLA  GEF++RA
Sbjct: 65  DKKIDEVLVAYMKGPNSYTAEDVIEINCHGGFISVKRILE-LVLSKDVRLAEAGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+++T+    ++   + G LS+   ++ +K+T + + +E  +D
Sbjct: 124 FLNGRIDLSQAEAVIDVINAKTDKAHEVAENQLDGSLSNRIREFREKVTELLAQVEVAID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + EE D++  +   +      L  DI       + G+I R G K VI+G  N GKSSL N
Sbjct: 184 YPEE-DIEFIAYTTLEEKTRELNKDIKKLYETSESGKIFREGLKTVIVGKPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           ++  ++ AIVTDIPGTTRDV+   ++++G  +KI DTAGIRETDD+VEK G++++    +
Sbjct: 243 SILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRETDDVVEKIGVEKSMASFD 302

Query: 298 NADLILL---------------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
            ADLI++               L+++  K+ I      D   +  + ++     EE    
Sbjct: 303 TADLIIMVVDSSSELSEEDREILEKVQGKETILLLNKTDLPQVIDEEEVKKYVNEENIIK 362

Query: 343 ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400
           IS+   EG+E++ ++I++++     K     I ++ RH   L + ++  E A    +D  
Sbjct: 363 ISALHNEGIEDVHDRIEAMVYKGDIKSSSNVIITNSRHKDALYRAMKSAEDAMRAIEDRM 422

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD +  +L+     LG I G    E LLD IF  FCIGK
Sbjct: 423 PLDFVEVDLKNIWDYLGYINGDTVSEDLLDNIFHNFCIGK 462


>gi|320589254|gb|EFX01716.1| mitochondrial GTPase [Grosmannia clavigera kw1407]
          Length = 591

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 175/313 (55%), Gaps = 24/313 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGR--I 60
           ++ TI+A+S+    + I++IR+SGP+C QV   +C       PR A++R  +       +
Sbjct: 62  DQSTIYALSSAPGKAGIAVIRVSGPACLQVRRALCPTAAQLKPRYAAVRTLYRPQASDDV 121

Query: 61  LDK-GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--LRLANPGEFSRRA 117
           LD   +++ FP P++ TGED  E HVHGG A V  +L  +       +R A PGEF+RRA
Sbjct: 122 LDTDAVVLYFPGPKTVTGEDVLELHVHGGAATVRAVLSAIPATSQTAIRYAEPGEFTRRA 181

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSG-ELSSLYGQWIDKLTHIRSFIEADL 176
           F + ++DL E E+L   + +ETE QRR ++ G  G +L + Y  W  +L   R+ IEA +
Sbjct: 182 FFHDRVDLAEVEALGAALDAETEQQRRAAVRGSGGRQLGATYDGWRRELLAARAEIEALI 241

Query: 177 DFSEEEDVQNFSSKE------VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           DF+E+   Q+F          V   +  L   +++H +    G ++R G +I ++G +NA
Sbjct: 242 DFAED---QHFDESPTDLLGGVSGHVRTLLRALATHEAAADRGSLLRQGIRIALVGPANA 298

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI------- 283
           GKSS+ N +A +  +IV+   GTTRDV+   LDL GYL   +DTAG R   D+       
Sbjct: 299 GKSSMMNLVAGRAASIVSPEAGTTRDVVQASLDLRGYLCTFADTAGFRNIRDVRDTSAAS 358

Query: 284 -VEKEGIKRTFLE 295
            +E EGI+R   E
Sbjct: 359 TIEAEGIRRARQE 371


>gi|164686452|ref|ZP_02210480.1| hypothetical protein CLOBAR_00017 [Clostridium bartlettii DSM
           16795]
 gi|164604463|gb|EDQ97928.1| hypothetical protein CLOBAR_00017 [Clostridium bartlettii DSM
           16795]
          Length = 462

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 162/462 (35%), Positives = 252/462 (54%), Gaps = 34/462 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDG-RI 60
           +TI A++T      I IIR+SG +  +V E I K    KK       +L Y    DG + 
Sbjct: 8   DTIAAIATAPGEGGIGIIRISGSNSLKVAEEIFKAVSGKKISEYNSRTLVYGNIFDGEKR 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+     P S+TGED  E + HGG   V  ILE L    ++RLA  GEF++RAF N
Sbjct: 68  IDEVLVAYMEGPRSYTGEDVIEINCHGGFISVKKILE-LILTKDVRLAEAGEFTKRAFLN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I S+T+  + ++   + G L++       K+T + + +E  +DFS+
Sbjct: 127 GRIDLSQAEAVIDVIKSKTDKAQEVAQNQLEGSLANKIKSLRLKVTEVLAQLEVSIDFSD 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV++ + KE+    L L+ +I       + G+I+R+G K VI+G  N GKSSL N++ 
Sbjct: 187 E-DVEDVTYKEIEEKSLELREEIKKLYDSAESGKILRDGLKTVIIGKPNVGKSSLLNSIL 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDV+   ++++G  +KI DTAGIRET+DIVEK G++++   +++AD
Sbjct: 246 GENRAIVTEIAGTTRDVIEEFVNIKGIPLKIVDTAGIRETEDIVEKIGVQKSKESIDSAD 305

Query: 301 LIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY---DHL 342
           L++               +L+   SKK I     ID         +  T  EE+   D++
Sbjct: 306 LVIIVLDSSKSLTDEDLEILESAKSKKTIVLLNKIDL-----DQAIDETAIEEFVGKDNI 360

Query: 343 --ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
             IS+   EG+E++ +KI+S + +   K     + ++ RH   L +    +  A    E+
Sbjct: 361 IKISALKNEGIEQIHDKIESMVFAGDVKSSSNLVITNSRHKDALFKAYNSINDAIDGIEQ 420

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D I  + +     LG I G    E LLD IFS FCIGK
Sbjct: 421 RLPYDFIEVDFKNIWDYLGYINGDTVQEDLLDTIFSNFCIGK 462


>gi|300776911|ref|ZP_07086769.1| tRNA modification GTPase TrmE [Chryseobacterium gleum ATCC 35910]
 gi|300502421|gb|EFK33561.1| tRNA modification GTPase TrmE [Chryseobacterium gleum ATCC 35910]
          Length = 461

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 153/473 (32%), Positives = 260/473 (54%), Gaps = 53/473 (11%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-------SLRYFFGLDG 58
           +TI A++T     A+ IIR+SG     V +      K FP K        ++ Y + +D 
Sbjct: 4   DTICALATANGIGALGIIRVSGNEALSVVQ------KSFPAKNLAKQKSHTIHYGYFMDE 57

Query: 59  R-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +L +F +P+SFT E+S E   HG   +   ILE L K    R+A  GEF+ RA
Sbjct: 58  EEAIDEVMLSIFLAPKSFTTENSVEIAFHGSPHIGKRILETLIK-NGARMAKAGEFTLRA 116

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++AD+I+SE E  R++++  + G +++        L +  S IE +LD
Sbjct: 117 FINGRIDLSQAEAIADVIASENEASRKVAINQLKGGITNEISILRTDLLNFVSLIELELD 176

Query: 178 FSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+EE DV+ F+ +  L+ +L  ++  ++S I   + G  I+NG  + I+G  NAGKS+L 
Sbjct: 177 FAEE-DVE-FADRSALSGLLDKIEVKLNSLIESFQYGNAIKNGTAVAIIGKPNAGKSTLL 234

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L K++ AIV++I GTTRD +   L ++G+  ++ DTAG+RET D +E  G+K+   +V
Sbjct: 235 NSLLKEERAIVSNIAGTTRDTIEEVLHIKGHAFRLIDTAGLRETVDEIEAIGVKKAKEKV 294

Query: 297 ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL----------------YSTY----- 335
           ENA++++ L +  ++    F ++I+ I    + DL                Y T      
Sbjct: 295 ENANILVYLADAATE---DFSEDIEMIQSLVREDLKLIICATKIDEVMPAKYETVEDIFR 351

Query: 336 ---TEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL- 390
              + E+D + IS+   + +++L N++ S + +   +    + +++RH   L +++  + 
Sbjct: 352 NAISHEFDFIKISAVENQNIQDLKNELSSYVEHLKSEENNVVITNQRHFEALRKSLHAVH 411

Query: 391 ---EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              E  S        +++A  LR A   LG+I+G V  +++L  IFSKFCIGK
Sbjct: 412 KVKEAISF---QISTELLAYELRNALEHLGEISGEVTNDEVLGNIFSKFCIGK 461


>gi|282859538|ref|ZP_06268643.1| tRNA modification GTPase TrmE [Prevotella bivia JCVIHMP010]
 gi|282587766|gb|EFB92966.1| tRNA modification GTPase TrmE [Prevotella bivia JCVIHMP010]
          Length = 446

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 148/464 (31%), Positives = 247/464 (53%), Gaps = 49/464 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD--GRILDK 63
           +TI A++T +   A+ IIR++G         I  K     +  ++ Y   LD  G+++D+
Sbjct: 3   DTICALATQS-GGALGIIRIAGSEAIPFVNSIFSKDITSAKANTIHYGNILDQSGKVIDE 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++ ++ +P S+TGED+ E   HG   ++  +L  L      R ANPGEF++RA+ NGK+
Sbjct: 62  VVVSLWRAPHSYTGEDAIEISCHGSSFILQEVLHALIA-SGCRQANPGEFTQRAYLNGKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI+S       +++  + G  S        +L  I S +E +LDFSE E+
Sbjct: 121 DLSQAEAVADLIASSNRASYEMALSQLKGHFSDELTTLRKRLLKITSLLELELDFSEHEE 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHI---SQG-KLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           ++ F+ +  L D   L N+I   +   +Q  K G+ ++ G  + I+G +N GKS+L N L
Sbjct: 181 LE-FADRSELVD---LTNEIDEKVLSLAQSFKTGQALKRGISVAIIGKTNVGKSTLLNQL 236

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV++I GTTRDV+    D+ G   +  DTAGIRET D+VE+ GI+RT+ E++NA
Sbjct: 237 LGEERAIVSNIEGTTRDVIEDTTDINGITFRFIDTAGIRETTDVVEQLGIQRTYKELDNA 296

Query: 300 DLILLLKEINSKKE--------------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISS 345
            +++ + +I+  +E              +     ID I   T+S L +         IS+
Sbjct: 297 QIVMWILDIDPTQEEYNEIKERVGEKPIVVVRNKIDTIKTSTQSPLVTIS-------ISA 349

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQT----VRYLEMASLNE 397
             G  + +L    + +L  K     F+    I ++ RH   L++     +R L   S+  
Sbjct: 350 KQGTNMHDL----EQLLYQKANIPAFTENSVIVTNARHYDALTRAHEALLRVLSAFSM-- 403

Query: 398 KDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
            +   D++AE+L+     LG+ITG  +  ++ L+ IF  FCIGK
Sbjct: 404 -ELSGDLVAEDLKDVIAILGEITGTQISSQETLNNIFKHFCIGK 446


>gi|255011872|ref|ZP_05283998.1| tRNA modification GTPase TrmE [Bacteroides fragilis 3_1_12]
 gi|313149706|ref|ZP_07811899.1| tRNA modification GTPase TrmE [Bacteroides fragilis 3_1_12]
 gi|313138473|gb|EFR55833.1| tRNA modification GTPase TrmE [Bacteroides fragilis 3_1_12]
          Length = 465

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 153/470 (32%), Positives = 246/470 (52%), Gaps = 41/470 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI---- 60
           ++TI A++T A   AI  IR+SGP    +   I    KP    +  + +    GRI    
Sbjct: 3   QDTICAIAT-AQGGAIGSIRVSGPEAITITSRIFTPAKPGKLLSEQKPYTLTFGRIYNGE 61

Query: 61  --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R A PGE+++RAF
Sbjct: 62  ELIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRTAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL++  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELAILREKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +   ++  I+  +    +G  I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRQLADGIEKVIARLVDSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D++E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDMIESLGIERTFQKLD 298

Query: 298 NADLILLLKEINSKKEIS---------FPK-----------NIDFIFIGTKSDLYSTYTE 337
            A+++L +  I+S   IS          P+            ++ I    K++L S  +E
Sbjct: 299 QAEIVLWI--IDSADAISQLKLLSDKILPRCEHKQLILVFNKVELINETQKNELTSQLSE 356

Query: 338 EYDH-----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
                     IS+   +  +EL  K+ +            I ++ RH   L++ +  +  
Sbjct: 357 HVGSEIESIFISAKQRQHTDELQQKLVAAAHLPTVTQNDVIVTNVRHYEALTRALDAIHR 416

Query: 393 AS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               L+    G D +++++R     L  I G V  + +L  IF+ FCIGK
Sbjct: 417 VQEGLDANISG-DFLSQDIRECIFHLSDIVGEVTNDMVLQNIFAHFCIGK 465


>gi|6573766|gb|AAF17686.1|AC009243_13 F28K19.23 [Arabidopsis thaliana]
          Length = 613

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 159/490 (32%), Positives = 245/490 (50%), Gaps = 61/490 (12%)

Query: 7   TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-----------LRYF 53
           TI A+ T  G  P A+ I+RLSGP   +V   + +  K   +K S           + Y 
Sbjct: 129 TIVAIVTPIGGPPGAVGIVRLSGPKAVEVARRVFRSAKKTKKKESDSDTWRPKSHFVEYG 188

Query: 54  FGLD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
             +D  G ++D+ L +   +P S+T ED  E   HG    +  +L    +    RLA PG
Sbjct: 189 AVVDSNGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCVEA-GARLAEPG 247

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+ RAF NG++DL +AE++  LIS+++      ++EG+ G  SSL      +   + + 
Sbjct: 248 EFTLRAFLNGRLDLSQAENVEKLISAKSSAAADAALEGIQGGFSSLVKSLRAQCIELLTE 307

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           IEA LDF  E+++     + V+N I  +  D+ S +      +++++G +I I+G  N G
Sbjct: 308 IEARLDF--EDEMPPLDIESVINKITSMSQDVESALDTANYDKLLQSGLQIAIVGRPNVG 365

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NA +K + AIVT++ GTTRDV+  ++ + G  + + DTAGIRET+DIVEK G++R
Sbjct: 366 KSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDTAGIRETNDIVEKIGVER 425

Query: 292 TFLEVENADLIL---------------LLKEINSKK-EISF------------P-----K 318
           +    + AD+I+               LL++I S K  +SF            P      
Sbjct: 426 SETAAKVADVIIMAVSAVEGWTEEDTELLRKIQSDKVGVSFYDLFGGLLYLKQPMILVMN 485

Query: 319 NIDFIFIGTKSDLYSTY-TEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            ID    G+   L      EE  H     S+ TG+G+EEL + I  IL     ++P    
Sbjct: 486 KIDCAPPGSCDQLEDQRKKEEVFHKSVFTSAVTGQGIEELEDAILEILG--LDRVPTGGH 543

Query: 375 SHKRHLYHLSQTVRYLE----MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
               +     Q VR  E    +    E +  +D     LR A++SL +I+G    E++L 
Sbjct: 544 QWTVNQRQCEQLVRTKEALVRLREAIEDEIPIDFWTIELREAALSLAQISGQDVSEEVLS 603

Query: 431 IIFSKFCIGK 440
            IF+KFCIGK
Sbjct: 604 SIFAKFCIGK 613


>gi|255545636|ref|XP_002513878.1| gtpase mss1/trme, putative [Ricinus communis]
 gi|223546964|gb|EEF48461.1| gtpase mss1/trme, putative [Ricinus communis]
          Length = 557

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 155/471 (32%), Positives = 232/471 (49%), Gaps = 40/471 (8%)

Query: 7   TIFAV--STGALPSAISIIRLSGPSCFQVCEFICKKKKPF-------PRKASLRYFFGLD 57
           TI A+  S G  P+A+ I+RLSGPS   V   + K            P    + Y   LD
Sbjct: 90  TIAAIVTSVGGPPAAVGIVRLSGPSAVDVAARVFKPMSKKKKKKIWQPTSHVVDYGVALD 149

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G ++D+ L +   SP S+T ED  E   HG    +  +L    +    RLA PGEF+ 
Sbjct: 150 NEGNVIDEVLALPMLSPRSYTCEDVVELQCHGSEVCLTRVLRACLQA-GARLAEPGEFTL 208

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++  LIS+ +      ++ G+ G  +SL      +   + + IEA 
Sbjct: 209 RAFLNGRVDLSQAENVGKLISANSVTAADAALAGLQGGFASLIKSLRAQCIELLTEIEAR 268

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF +E  +       +++ I  +  DI   +      +++++G +I ++G  N GKSSL
Sbjct: 269 LDFDDE--MPPLDLNLIVDRIHVMSQDIEIALETANYDKLLQSGLQIALVGRPNVGKSSL 326

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NA +K + AIVT+I GTTRDV+   + + G  V + DTAGIRETDDIVEK G++R+   
Sbjct: 327 LNAWSKSERAIVTEIAGTTRDVVEAGVTVGGIPVTLLDTAGIRETDDIVEKIGVERSEAV 386

Query: 296 VENADLIL---------------LLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTE 337
              AD+I+               LL  I S K+    S P  +    I T   L   +  
Sbjct: 387 AMGADVIILTISAFDGWTSEDSELLSRIESNKKSVGSSTPVVLAINKIDTAPSLSMEWIG 446

Query: 338 EYDHLIS------SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL 390
            Y    S      + TG+G++EL   I  I+  N+          ++R    L +T   L
Sbjct: 447 RYSKAFSKHVFTCAVTGQGIKELEMAISEIVGLNRIPTGGRKWTVNQRQCEQLMRTKEAL 506

Query: 391 EMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                + KD   LD    +LR A+++LG+I+G    E++L  IF KFCIGK
Sbjct: 507 ARLKSSIKDEMPLDFWTIDLRDAALALGQISGEGISEEVLSNIFGKFCIGK 557


>gi|307721584|ref|YP_003892724.1| tRNA modification GTPase trmE [Sulfurimonas autotrophica DSM 16294]
 gi|306979677|gb|ADN09712.1| tRNA modification GTPase trmE [Sulfurimonas autotrophica DSM 16294]
          Length = 445

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 148/462 (32%), Positives = 241/462 (52%), Gaps = 46/462 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T     +I+IIRLSG     + + +  K+   PR A+L   +  +  ++D+ +
Sbjct: 3   ETIAAIATANGIGSIAIIRLSGEHALDIAKKLTCKENFTPRHATLTNIYNDNNELIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F  P SFT ED  E   HGG  V   IL    K    RLAN GEFS+RAF NG+IDL
Sbjct: 63  VIYFKGPYSFTAEDVVEIQCHGGFIVAQTILRATLK-AGARLANAGEFSKRAFFNGRIDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---E 182
            EAE++A LI +++E   ++    M G L     Q  D + HI ++ E  +D++EE   E
Sbjct: 122 SEAEAIAQLIEAKSEDAAKILASQMKGSLKEFIEQVRDDIIHILAYSEVSIDYAEEDLPE 181

Query: 183 D-VQNFSSKEVLNDI--LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           D V    +K  L+++  L  K  I+S   +G     +  G+++ I+G  N GKSSL N L
Sbjct: 182 DLVAQIQAK--LDELYTLLEKTLITSKSREG-----LMQGFRVAIIGKPNVGKSSLLNTL 234

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + AIV+DI GTTRD +   + +  +L++I DTAGIRE++D +E+ GI+R+   +  +
Sbjct: 235 LNYNRAIVSDIAGTTRDTIEEQVKIGTHLIRIVDTAGIRESNDEIERIGIQRSLEAINES 294

Query: 300 DLIL------------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE--- 338
           D+++                  L+K+   KKE+   KN        K DL   +  E   
Sbjct: 295 DIVIALFDGSRKADEEDEQILELIKQNRDKKEMLVVKN--------KIDLEQKFHLENLA 346

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           +D  ++S     +  L+ K+++I+          + S +R +  +  T++ ++ A    +
Sbjct: 347 FDLELNSRN--DVTALVKKLEAIMDASNVSDEIMLIS-QRQISAVEATIQNIKEAFEPLQ 403

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  L+I + +L  A   +  IT   + +++LD +F  FC+GK
Sbjct: 404 DQELEIFSFHLNEAVKEMASITRPFENDEMLDKMFGSFCLGK 445


>gi|256820731|ref|YP_003142010.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea DSM 7271]
 gi|256582314|gb|ACU93449.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea DSM 7271]
          Length = 472

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 152/470 (32%), Positives = 251/470 (53%), Gaps = 43/470 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL---DGRI 60
           +TI A++T +   AI++IRLSG     + + + K    K      S     G      ++
Sbjct: 11  DTIVALATASGVGAIAVIRLSGKEAITIADSVFKPHSGKSLLEAPSHTVHLGTLESKDQV 70

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM---PNLRLANPGEFSRRA 117
           +D+ L  +F   +S+TGE   EF  HG     N I+EE+ K+      RLA+ GEF++RA
Sbjct: 71  IDECLATIFKGTKSYTGEPVVEFSCHGS----NYIVEEVIKLCLAKGARLADAGEFTKRA 126

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+ L +AE++ADLI+S+++   +++++ M G  +S       +L +  S IE +LD
Sbjct: 127 FLNGKLALNQAEAVADLIASDSKASHQVALQQMRGGFTSEIEGLRQELLNFTSLIELELD 186

Query: 178 FSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           FSEE DV+ F+ +     +L  +K  + S +    +G +++NG  + I+G  NAGKS+L 
Sbjct: 187 FSEE-DVE-FADRTQFKTLLSTIKTIVLSLLQSFSVGNVLKNGIPVAIVGKPNAGKSTLL 244

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  ++ AIV+DI GTTRD +   L + G   +  DTAGIR+T D +E  G+++   ++
Sbjct: 245 NALLNEERAIVSDIAGTTRDTIEETLHIGGIAFRFIDTAGIRDTQDQIEAIGVQKAKEKI 304

Query: 297 ENADLILLL---KEINSKKEISFPK-----NIDFIFIGTKSDLY--STYTEEYDHLISSF 346
           E A ++L L   K+ ++++ ISF K        F+ +  K+DL   S  T   + ++ S 
Sbjct: 305 EKASIVLYLFDVKDSSAQEIISFVKENYREGTKFVLLHNKTDLSTESNITPFDNEILQSL 364

Query: 347 TG-----------EG-----LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
            G           EG     L++ ++     L+N  K    +   H   L++  Q++  +
Sbjct: 365 QGYTDTLLRISAKEGNNILALKDFLSHYAQSLNNTGKATIITNIRHYEALHNTLQSIERI 424

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E     +     D++A ++R A   LG ITG V  +++L  IFS+FCIGK
Sbjct: 425 EQGI--QLQLSGDLLAIDIREALYHLGSITGTVSNDEVLGNIFSRFCIGK 472


>gi|315650200|ref|ZP_07903275.1| tRNA modification GTPase TrmE [Eubacterium saburreum DSM 3986]
 gi|315487557|gb|EFU77865.1| tRNA modification GTPase TrmE [Eubacterium saburreum DSM 3986]
          Length = 456

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 154/461 (33%), Positives = 239/461 (51%), Gaps = 35/461 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LDGRILD 62
           +TI A++T    S I I+R+SG     + + I    K      S    +G       I+D
Sbjct: 5   DTIAAIATALGESGIGIVRISGEDAIGIADKIYSGNKSLREVNSHTINYGHVYFGDEIID 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+++  +P +FTGED+ E + HGGI ++  +L  +      R+A PGEF++RAF NGK
Sbjct: 65  EVLVMLMKAPRTFTGEDTVEINCHGGILILEKVLHAVLSC-GARMALPGEFTKRAFLNGK 123

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ D+I ++ ++  +  +  +SG L+    +   K+    +FIEA LD  E  
Sbjct: 124 MDLSQAEAVIDIIEAKNDLALKAGIRQLSGALTESIKKIRAKILEQIAFIEAALDDPEHY 183

Query: 183 DVQNFSSKEVL------NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
            +  +S+K           I +L+          K G IIR G   VI+G  NAGKSS+ 
Sbjct: 184 SLDGYSAKLKKIVKKLLGGIEYLQKSF-------KEGSIIREGINTVIIGKPNAGKSSIL 236

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L++ D AIVTDI GTTRD LT ++ L G  + I+DTAGIRETDD+VE  G+K+     
Sbjct: 237 NLLSRTDRAIVTDIAGTTRDTLTENIKLSGISLNITDTAGIRETDDVVESIGVKKAIEAS 296

Query: 297 ENADL---------------ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
            NADL               I L + +  K+ I      D     +  D+   Y+++   
Sbjct: 297 NNADLNLVVIDGLLPLDSEDISLFESVKDKQAIILINKSDKELKVSVDDIRK-YSDKDVI 355

Query: 342 LISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
           + S+    GL+EL N IKS  +SN+       I ++ RH   +++ +  L+M  S  E+ 
Sbjct: 356 IFSAKDNTGLDELENMIKSKFISNEINFNDQIIITNIRHQEIINEAMESLDMCLSSIEEG 415

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D    +L  A  +LG+I G    + +++ IFSKFC+GK
Sbjct: 416 YEEDFFTIDLLNAYEALGEIIGETVDDDVVNEIFSKFCMGK 456


>gi|153811977|ref|ZP_01964645.1| hypothetical protein RUMOBE_02370 [Ruminococcus obeum ATCC 29174]
 gi|149831876|gb|EDM86962.1| hypothetical protein RUMOBE_02370 [Ruminococcus obeum ATCC 29174]
          Length = 486

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 154/459 (33%), Positives = 246/459 (53%), Gaps = 30/459 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKA---SLRYFFGLDGR-I 60
           TI A+ST    S I I+R+SG +   V   I + K  K   R     ++ Y F  DG  +
Sbjct: 33  TIAAISTAMSASGIGIVRISGENAMDVIAKIYRSKNGKKDIRTVVSHTIHYGFIYDGEEV 92

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+++   P ++TGED+ E   HGG+  +  +LE + K   + +A PGEF++RAF N
Sbjct: 93  VDEVLVMIMRGPHTYTGEDTVEIDCHGGVYAMKRVLETVLKNGAV-IAEPGEFTKRAFLN 151

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ D+I ++  M  + S+E + G +     +   +L H  ++IE  LD  E
Sbjct: 152 GRLDLSQAEAVMDVIQAKNSMALKSSVEQLKGSVQRAVKEIRARLLHQIAYIETALDDPE 211

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D+ ++  +E+   +     +IS  +     G +I+ G K VILG  NAGKSSL N L 
Sbjct: 212 HFDLTDYP-QELQKIVEKESENISELLKTADDGRMIQEGIKTVILGKPNAGKSSLLNFLV 270

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVT+I GTTRD+L   + L G  +++ DTAGIRET+D+VEK G+ +     ENAD
Sbjct: 271 GEDRAIVTEIAGTTRDILEEYISLNGITLRVIDTAGIRETEDVVEKIGVGKAKQMAENAD 330

Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTY-TEEYDHL-------ISSF 346
           LIL + +       N ++ +        I I  K+DL +    EE           +S  
Sbjct: 331 LILYVVDSSLPLDDNDREIMELLSGRKSIVIYNKTDLEAAVDIEELKEKTGSPVIPVSVV 390

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402
              G+ +L ++IK +  +   +L F+     ++ RH   L ++   L++  ++    G+ 
Sbjct: 391 EETGISQLEDEIKRMFFH--GELSFNDEVYITNARHKAALEESKESLKLV-MDSIAMGMS 447

Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  + +L  A  SLG+I G    E L++ IFSKFC+GK
Sbjct: 448 EDFFSIDLMNAYESLGRIVGESVGEDLVNEIFSKFCVGK 486


>gi|153815417|ref|ZP_01968085.1| hypothetical protein RUMTOR_01652 [Ruminococcus torques ATCC 27756]
 gi|145847276|gb|EDK24194.1| hypothetical protein RUMTOR_01652 [Ruminococcus torques ATCC 27756]
          Length = 465

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 247/478 (51%), Gaps = 57/478 (11%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGRI-- 60
           KETI A+STG   S I I+R+SG     V + I + KK     +  ++ Y + +D  I  
Sbjct: 3   KETIAAISTGMTNSGIGIVRISGEEAVLVADRIYRGKKKLCEVKSHTINYGYIVDREISS 62

Query: 61  --------LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
                   +D+ L+ V  +P +FTGED+ E + HGG  VV  +LE + K      A PGE
Sbjct: 63  AEKKSEEVIDEVLVTVMKAPGTFTGEDTVEINCHGGTFVVKKVLELVLK-NGASPAEPGE 121

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NGK+DL +AE++ D+I+SE E   + S+  + G +         K+ +  +FI
Sbjct: 122 FTKRAFLNGKMDLSQAEAVIDVINSENEYALQSSVSQLKGSVKKKINDIRKKIIYHTAFI 181

Query: 173 EADLDFSEEEDVQNFS------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
           E  LD  E   V  +S      ++E++ ++  L       I     G +I+ G K VI+G
Sbjct: 182 ETALDDPEHISVDGYSDTLRSSAEEIIQELERL-------IHSADDGRVIKEGIKTVIVG 234

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             NAGKSSL N LA  + AIVTDI GTTRDVL   + L G  + + DTAGIR+T+D++EK
Sbjct: 235 KPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGGLNLNVVDTAGIRQTEDLIEK 294

Query: 287 EGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
            G+ +     E ADLI+ + +       N +K I+   +   I +  KSD+ +  + E  
Sbjct: 295 IGVDKALEYAETADLIIYVVDASRSLDENDEKIINMISDKKSIVLLNKSDIDTVISAE-- 352

Query: 341 HL-----------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           H+           IS+    G+++L +K+K +    F K   S  + + ++ ++ Q    
Sbjct: 353 HIKEKVSNIPIISISAKEERGIKDLEDKVKEM----FLKGDISF-NDQVYISNVRQKNAL 407

Query: 390 LEMASLNEK-------DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LE     +K       +   D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 408 LEALESMKKVIRSIDDNMPEDFYSIDLMDAYESLGYITGNSVGEDLINEIFSKFCMGK 465


>gi|322712825|gb|EFZ04398.1| GTPase family protein [Metarhizium anisopliae ARSEF 23]
          Length = 505

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 148/449 (32%), Positives = 223/449 (49%), Gaps = 79/449 (17%)

Query: 60  ILD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM---PNLRLANPGEFSR 115
           ILD + LL+  PSP++ TGE+  E HVHGG A V  +L  + K      +R A PGEF++
Sbjct: 38  ILDVEALLLHLPSPKTVTGEEVLELHVHGGPATVKAVLSAIPKCQASTRIRYAEPGEFTK 97

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL + ESL D + +ETE QRR ++ G SG L   Y  W  +L   R  IEA 
Sbjct: 98  RAFFNGRLDLAQIESLGDTLDAETEQQRRAAVRGNSGALGRNYEDWRHQLLQARGEIEAL 157

Query: 176 LDFSEEEDVQNF--SSKEVLNDILFLKNDISSHISQGKLG----EIIRNGYKIVILGHSN 229
           +DFSE+   Q+F  S  E+L ++      I   I   +LG    E++RNG +I ++G  N
Sbjct: 158 IDFSED---QHFDESQSELLENVARQVAKILRSIDLHELGSQRSELLRNGIRIALVGPPN 214

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDD---- 282
           AGKSSL N +  ++ +IV+   GTTRD++   LD+ G+L   +DTAG R   ET D    
Sbjct: 215 AGKSSLMNIIVGREASIVSGEAGTTRDIVEASLDIRGFLCSFADTAGFRSKTETSDEVIG 274

Query: 283 IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
            VE+EGI+R     + +D++L+L  +    S   I F K    +    +S L     ++ 
Sbjct: 275 AVEEEGIRRARARAQESDVVLVLASVEPGPSGPFIHFDKETMALATEAQSSLVVVNKQD- 333

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLP----------------------------- 370
                +  G+ L  L+ + + ++  ++  LP                             
Sbjct: 334 -----TVDGDVLSHLLRQFRQLVREEYPGLPQEPICISCKEDGSASRDSGVQSVVDALVA 388

Query: 371 -FS----IPSHKRHLYHLSQTVRYL---------EMASLNEKDCGLD----IIAENLRLA 412
            FS    +P   R L  +++  R L         +     +   GLD    + AE LR A
Sbjct: 389 SFSQMTDMPPDMRDLLGVTERQRQLLAKCRGHLEDFMGEAQPQEGLDSDIVLAAEYLRYA 448

Query: 413 SVSLGKITG---CVDVEQLLDIIFSKFCI 438
           +  L +ITG     DVE++L ++F KFC+
Sbjct: 449 ADCLARITGKGEAGDVEEVLGVVFEKFCV 477


>gi|206900693|ref|YP_002251652.1| tRNA modification GTPase TrmE [Dictyoglomus thermophilum H-6-12]
 gi|206739796|gb|ACI18854.1| tRNA modification GTPase TrmE [Dictyoglomus thermophilum H-6-12]
          Length = 455

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 153/461 (33%), Positives = 256/461 (55%), Gaps = 32/461 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG---LDGR 59
           K+ I A++T    SAI +IRLSGP    + +  FI KK+K      S    +G       
Sbjct: 2   KDNIVAIATPLGFSAIGVIRLSGPDVIDIVKKIFIPKKEKDLKEVLSHTIHYGNIVYKNE 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L+ V+ +P+S+TGED  E   HG   ++  IL+ L +    R+A  GEF++RAF 
Sbjct: 62  IIDEVLVAVYKAPKSYTGEDMVEIFTHGSPIILEEILKILVE-EGARIAERGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DLL+AES+ ++I +E+++  + ++  + GELS        K+ ++R ++EA +DF 
Sbjct: 121 NGKVDLLQAESINEIIRAESKIALKRALSKLKGELSRKLRDLKSKVEYLRIYLEASIDFP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+  V+    ++ + +I  +K ++S  + + + G+ IR GY ++++G  N GKSSLFNAL
Sbjct: 181 ED--VEEKEKEDWIRNIEEIKKEVSDLLEKAEKGDWIREGYGVILVGRPNVGKSSLFNAL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            ++D AIVT IPGTTRD +  +L L  G+LVKI DTAG+    DI++K G++RT   +E 
Sbjct: 239 MREDRAIVTPIPGTTRDYIEGELYLSSGHLVKIYDTAGLGIPKDILDKMGMERTEKILEK 298

Query: 299 ADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHL-I 343
           ++LIL +         +EIN  ++I   +N   I +  K DL      S + ++ + + +
Sbjct: 299 SNLILFVVDGSCEASEEEINLLEKIKSYQNKKLILVVNKIDLPQKVDLSVFPKDIEKIFV 358

Query: 344 SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHK---RHLYHLSQTVRYLEMASLNEKD 399
           S+   +G+EE+   I + I S   +   F    H+   + +Y+L +      +  L    
Sbjct: 359 SAKERKGIEEIEKVIERHITSQDVEDGIFLNMYHREKLKEVYNLCEE----GLNVLKNLP 414

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LD++ + +     + G+I G      + D IF  FC+GK
Sbjct: 415 QSLDVLGDIIYDMDRAFGEILGEEVSLDITDKIFENFCVGK 455


>gi|323303561|gb|EGA57352.1| Mss1p [Saccharomyces cerevisiae FostersB]
          Length = 413

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/327 (38%), Positives = 188/327 (57%), Gaps = 25/327 (7%)

Query: 4   EKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGR-- 59
           ++ TI+A+ST A   SAI+IIR+SG    +     +     P  RK  LR  +       
Sbjct: 35  QQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKXILRNIYSPSSCSV 94

Query: 60  ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103
                     +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  +       
Sbjct: 95  KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
           ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W +
Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLND----ILFLKNDISSHISQGKLGEIIRNG 219
            +      + A +DF+++   +  ++ E+ +D    I+ L++ I + + + +   I++NG
Sbjct: 215 TIIENMXQLTAIIDFADDNSQEIQNTDEIFHDVEKNIICLRDQIVTFMQKVEKSTILQNG 274

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAGIRE
Sbjct: 275 IKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIRE 334

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            + D +E  GI+R   +   +DL L +
Sbjct: 335 KSSDKIEMLGIERAKKKSVQSDLCLFI 361


>gi|167975307|ref|ZP_02557584.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195659820|gb|EDX53200.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
          Length = 437

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 142/446 (31%), Positives = 234/446 (52%), Gaps = 23/446 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILDK 63
           TI A++T  +  AI IIR+SGP  F++   I   K    +K + + ++     + ++LD+
Sbjct: 3   TIVALATAPMNCAIHIIRISGPQAFEMINKISTTK---IKKETFKIWYTTLKDNDQVLDE 59

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L+  F  P++FTGED  E + HGG+ V N I++ L K    + A  GEFSRRA  N K+
Sbjct: 60  VLVNTFVGPKTFTGEDLVEINCHGGVIVANLIIKILIKY-GCQPAQRGEFSRRALLNKKM 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH----IRSFIEADLDFS 179
           DL + E++ +L++++ E    LS++G+ G L     Q I    H    I   IE ++D+ 
Sbjct: 119 DLSKIEAINNLVNAKNE----LSVKGVIGALLGRVSQSISDFKHELFMIIGQIEVNIDYP 174

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+   +  +   +L L   I   I Q K     + G K++I+G  N GKS+L NA+
Sbjct: 175 EYDDVEQVDAINLKQRLLVLNEKIKKIIDQSKNCTNYK-GIKVLIIGKPNVGKSTLLNAI 233

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +  AIVTDIPGTTRDV+   ++++   + I DTAGI  T+D VE  GI +    +   
Sbjct: 234 CNEQKAIVTDIPGTTRDVIESSINIDNITLNILDTAGIHSTNDFVENLGINKAKELINKV 293

Query: 300 DLILLLKEINSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           DL+L L   N+++++      K+   + + TK DL   Y++  D +  +     ++ LI+
Sbjct: 294 DLVLYLVPANNQQDLELYDLIKDQKHLLVYTKKDLIDQYSD--DQIYINAKDNDIQALID 351

Query: 357 KIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASV 414
           KIK +    +F      +   +R +  L      ++ A  N EK   +D++  +L   ++
Sbjct: 352 KIKELFYVQEFDNANIDVLQSQRQIGILENVNYLIDNAITNLEKGDTVDLVVADLEFCNL 411

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            L ++ G       LD +F  FC+GK
Sbjct: 412 RLNELLGIGSEYDFLDDLFKNFCVGK 437


>gi|254525774|ref|ZP_05137826.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9202]
 gi|221537198|gb|EEE39651.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9202]
          Length = 303

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 118/281 (41%), Positives = 166/281 (59%), Gaps = 9/281 (3%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPSPE 73
            ++IIR+SG      C+ I + K  +  + S R F G        + +D+ L+ V  SP 
Sbjct: 24  GVAIIRVSGKDSINSCKKIVQTKSKYAWE-SHRVFHGFIQENKQNKFIDEVLISVMKSPN 82

Query: 74  SFTGEDSAEFHVHGGIAVVNGILE-ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
           SFTGED  E H HGG+ +VN +L+  L+    +RLANPGEFS+RAF NGKIDL +AES+ 
Sbjct: 83  SFTGEDVVELHCHGGVIIVNKVLKILLSSNSRVRLANPGEFSQRAFLNGKIDLTQAESIN 142

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
            LI++       L+  G+ GE+        + L +    IEA +DF  EED  +F   + 
Sbjct: 143 QLINASNTRSAELAFSGIQGEIKKKINDIKNDLINQLCEIEARVDF--EEDFTDFDYTKY 200

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           L +I  +K  I   I   K    I +G  I ++G +N GKSSL N LAKK+ AIVT+IPG
Sbjct: 201 LKNIKKVKEKIEVLIENAKRNSYIHDGISIALIGKTNVGKSSLLNLLAKKEKAIVTNIPG 260

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           TTRDV+ ++L +    +KI DTAGIRET + +E+ GIK++F
Sbjct: 261 TTRDVIEVNLTINDIPMKIIDTAGIRETREQIERIGIKKSF 301


>gi|227498804|ref|ZP_03928944.1| thiophene and furan oxidation protein thdF [Acidaminococcus sp.
           D21]
 gi|226904256|gb|EEH90174.1| thiophene and furan oxidation protein thdF [Acidaminococcus sp.
           D21]
          Length = 455

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 250/462 (54%), Gaps = 34/462 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFFGLDGR--I 60
           ++TI A++T     A+ IIR+SGP   ++   I + K+P    R   L+Y    DG+   
Sbjct: 2   EDTISAIATALGVGAVGIIRVSGPESLRLVNRIFRAKEPLSSSRPRYLQYGHIHDGKGVD 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L +  P P S+TGED  E   HGG   +  IL  L      R A PGEF++RAF N
Sbjct: 62  VDEVLAVYMPGPHSYTGEDVVEIQCHGGREALKEILR-LTFSEGARPAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL EAE++ D+I++++      +  G  G LS    +   +L  +   +EA +D+ E
Sbjct: 121 GRLDLTEAEAVMDIINAKSRRALVAAGRGHKGALSRSIREIRGRLRDLVVHLEAIIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           + D+++ +  E    +    + +     +G+ G+I+R G +I I+G  N GKSSL N L 
Sbjct: 181 D-DIEDVTYDETEGVLQQCYDAVMQLRKKGETGQILREGLRIAIVGRPNVGKSSLLNRLL 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + D AIV++IPGTTRD++   + L+G  + ++DTAG+R+T+D VE+ G+KR+   +E+A+
Sbjct: 240 QTDRAIVSNIPGTTRDIIEEQMTLDGIPLVLTDTAGLRDTEDYVEQIGVKRSRAILEDAE 299

Query: 301 LILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHL-------ISSF 346
           L+L++ +  S      +K ++  KN   + +  KSDL    + EE + L       +S  
Sbjct: 300 LVLVVLDSASPLTDEDRKLLAAVKNRPHLVLLNKSDLAPALSREEVEALSGGDVLSLSVK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSH--------KRHLYHLSQTVRYLEMASLNEK 398
            G G++++   ++  +  +       + +         ++  +HL++T+R  +  +    
Sbjct: 360 DGAGMDQVGIHLRHFVMGEGSDAEMGLMTQNARQGMLLEQAAHHLAETLR--DARAHLPY 417

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           DC    +  +L      LG+ITG    E++++ IF++FC+GK
Sbjct: 418 DC----LTIDLTQVLHELGEITGDDVPEEIINEIFAQFCVGK 455


>gi|225377579|ref|ZP_03754800.1| hypothetical protein ROSEINA2194_03229 [Roseburia inulinivorans DSM
           16841]
 gi|225210555|gb|EEG92909.1| hypothetical protein ROSEINA2194_03229 [Roseburia inulinivorans DSM
           16841]
          Length = 457

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 155/459 (33%), Positives = 245/459 (53%), Gaps = 29/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLDG-R 59
           +TI A++T    S I I+R+SG     + + I      KK +  P   ++ Y    DG  
Sbjct: 4   DTIAAIATAMTSSGIGIVRISGDEAVSITDRIFEMKNQKKLEDMPTH-TIHYGHIHDGDE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ ++++   P+S+T ED+ E   HGG+ V+  ILE + K    R A PGEF++RAF 
Sbjct: 63  VIDEVMVVLMRGPKSYTREDTVEIDCHGGVYVMKRILETVIKY-GARPAEPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AES+ D+I+S+ E   + S+  +SG +S    +    + H  +FIE+ LD  
Sbjct: 122 NGRIDLSQAESVIDVINSKNEFALKSSLSQLSGSVSEKIKEIRGNVLHEIAFIESALDDP 181

Query: 180 EEEDVQNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           E   +  +  K   +++D++     I   ++    G++++ G   VI+G  NAGKSSL N
Sbjct: 182 EHISLDGYPEKLSGIVSDVI---KKIDKLLANSDNGKMLKEGISTVIVGKPNAGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ AIVTDI GTTRDVL   ++L G L+ I DTAGIR+T+D+VEK G++R    + 
Sbjct: 239 FLVGEEKAIVTDIAGTTRDVLEEQINLNGILLNIIDTAGIRDTEDVVEKIGVERAKKYLN 298

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--YDHL------I 343
           NADL++ + +       N  + +   K+   I +  KSDL    T E    HL      I
Sbjct: 299 NADLVIYVVDTSTALDENDHEIMELLKDRHAIVLLNKSDLSPVTTVEDIRKHLDKKMISI 358

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
           S+    G+++L   IK +  S +         ++ RH   L + +R L +   +   D  
Sbjct: 359 SAKEQTGMDDLEETIKEMFFSGEVTFNDEVYITNIRHKTSLQEALRSLHLVLQSIADDMP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  + +L  A   LG I G    + L++ IFSKFC+GK
Sbjct: 419 EDFYSIDLMNAYEELGNIIGESVEDDLVNEIFSKFCMGK 457


>gi|81429490|ref|YP_396491.1| tRNA modification GTPase TrmE [Lactobacillus sakei subsp. sakei
           23K]
 gi|123563597|sp|Q38UE9|MNME_LACSS RecName: Full=tRNA modification GTPase mnmE
 gi|78611133|emb|CAI56186.1| tRNA modification GTPase trmE [Lactobacillus sakei subsp. sakei
           23K]
          Length = 462

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 249/459 (54%), Gaps = 25/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGR-- 59
           E +TI A+ST     AISI+RLSG     + + + + K    + AS    +G  +D +  
Sbjct: 7   EFDTITAISTPPGEGAISIVRLSGDDSLAIIKRVYRGKD-LDKVASHTINYGHIIDPKTD 65

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ ++ V  +P++FT ED  E + HGGI   N IL+ L      R+A PGEF++RAF
Sbjct: 66  AVVDEVMVSVMRAPKTFTREDVIEINCHGGIVATNRILQLLMSY-GARMAEPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AES+ DLI ++T+   +++++ + G L+ L      ++  + + +E ++D+
Sbjct: 125 LNGRIDLTQAESVMDLIRAKTDRAMQVAVDQLDGSLTHLIKNLRQEILEVLAQVEVNIDY 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D    +++ +L     +K  I   +   + G+++R G    I+G  N GKSSL N 
Sbjct: 185 PEY-DTDEMTTRILLEKAELVKGRIGELLQTAQQGKVLREGLATAIVGRPNVGKSSLLNH 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVTD+ GTTRDVL   +++ G  +K+ DTAGI +T+D VEK G++R+   +  
Sbjct: 244 LLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTEDKVEKIGVERSRAAITK 303

Query: 299 ADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI-------- 343
           ADLILL+        I  ++ I+   +   I I  K+DL +    +E   L+        
Sbjct: 304 ADLILLVLNQSEPLTIEDRELITATTDKKRIIILNKTDLPNQLDLDELQTLVRADEVIQT 363

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S  T EG+ +L  +I  +     +    ++  ++ R +  L+Q  + L E+ S       
Sbjct: 364 SILTSEGVTDLEAQIAKLFFGGIENSQSTVMITNARQIGLLNQAQQSLDEVISGIAAGMP 423

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 424 VDLVQIDMTNCWDKLGEITGDSAPDELITELFSQFCLGK 462


>gi|189347846|ref|YP_001944375.1| tRNA modification GTPase TrmE [Chlorobium limicola DSM 245]
 gi|189341993|gb|ACD91396.1| tRNA modification GTPase TrmE [Chlorobium limicola DSM 245]
          Length = 473

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 155/471 (32%), Positives = 252/471 (53%), Gaps = 41/471 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRI 60
           +++ I A++T     A+++IR+SG     + + + +K   F  +  LR   G     GR+
Sbjct: 10  QEDPIAAIATPLGVGALAVIRISGSGVLDIAQGLFRKSGHFDFQ--LRESKGFTAHFGRV 67

Query: 61  LDK-GLL-----IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            D+ GL+     +VF SP S+T ED  EF  HGG  VV  +L+ L +    R A PGEF+
Sbjct: 68  YDRDGLVDEVIALVFRSPNSYTREDMVEFSCHGGPVVVRHMLQALYE-AGCRPAEPGEFT 126

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAF NG+IDLL+AE++ ++I + +E   R ++  M G LS    Q   +L    + +E 
Sbjct: 127 RRAFINGRIDLLQAEAIGEMIHARSESAYRTAVNQMQGNLSMKLEQLRQRLLESCAMLEL 186

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFSEE DV+  S  E+   ++ L+ ++   +   + G ++  G   VI+G  NAGKS+
Sbjct: 187 ELDFSEE-DVEFQSRGELREQLMQLQAEVQKLVDSYQHGRLLSEGVATVIVGKPNAGKST 245

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIV+ +PGTTRD +      E  + +++DTAG+RE  + +E+EG+ R++ 
Sbjct: 246 LLNTLLGEERAIVSHMPGTTRDYIEECFVHEKTMFRLTDTAGLREAAEEIEREGVGRSYK 305

Query: 295 EVENADLILLLKEINSKKEISFPKNI----------DFIFIGTKSDLYSTYTEEYDHL-- 342
           ++  ADLIL + +++  + +   + I            I I  K+DL S   E    L  
Sbjct: 306 KIGEADLILYMLDLSQPESLKESEVIREFRETYTHAKLIVIANKTDLASDSEERLQQLRE 365

Query: 343 --------ISSFTGEGLEELINKIKSILS--NKFKKLPFSIPS--HKRHLYHLSQTVR-Y 389
                   IS+  GEG++ L+  + S++   +K       + S  H   L +    VR  
Sbjct: 366 ETGCDVAGISAKQGEGIDGLLRLMSSMVEGLDKLHDASVLVTSLRHYVSLRNAGDAVRNA 425

Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LE+        G ++IA  LR A   +G+ITG V  E++L++IF +FC+GK
Sbjct: 426 LELLGAY---AGTELIAFELRSALDYVGEITGKVVSEEVLNVIFDRFCVGK 473


>gi|289422583|ref|ZP_06424426.1| tRNA modification GTPase TrmE [Peptostreptococcus anaerobius 653-L]
 gi|289157155|gb|EFD05777.1| tRNA modification GTPase TrmE [Peptostreptococcus anaerobius 653-L]
          Length = 459

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/433 (34%), Positives = 230/433 (53%), Gaps = 45/433 (10%)

Query: 42  KPFPRKASLRY-----FFG--LDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVN 93
           KPF ++  L Y      +G  +D  R++D+ L+     P S+T ED  E + HGG   V 
Sbjct: 38  KPFYKENLLDYPNRSLVYGNIVDSDRVIDEVLIARMEGPNSYTAEDVVEINCHGGFISVK 97

Query: 94  GILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGE 153
            ILE + K    RLA+PGEF++RAF NG+IDL +AE++ D+I+++T+    ++   + G 
Sbjct: 98  KILELVLK-KGARLADPGEFTKRAFLNGRIDLSQAEAVIDIINAKTDQSHDIAQTQLEGA 156

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213
           LS       + +T + + +E  +D+ EE D++  + KE+ +    ++ ++         G
Sbjct: 157 LSQKVRSLRNMITEVLAQVEVSIDYPEE-DIEFITYKELTDKTSQIQKEVVKMYETSDTG 215

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +I+R G K  ILG  N GKSSL N +  ++ AIVT+I GTTRDV+   ++++G  +KI D
Sbjct: 216 KILREGLKTAILGKPNVGKSSLMNWILGENRAIVTEIAGTTRDVIEEFVNIKGIPLKIVD 275

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLIL---------------LLKEINSKKEISFPK 318
           TAGIRETDDIVEK G++++   ++++DL+L               +L  IN KK +    
Sbjct: 276 TAGIRETDDIVEKIGVEKSRDHMKSSDLVLVVLDSSRELEEDDLEILDAINPKKTLVLIN 335

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI-----LSNKFKKLPFSI 373
            ID         +     EE    IS+   +GLE + +KI+++     +SNK   +  + 
Sbjct: 336 KIDLESRLDMDKVKEYIAEENIIHISAMENKGLESIHDKIETMVYEGRVSNK-GDVMITN 394

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQ 427
             HK  +Y          M S+N+   GL      D I  +L+ A  SLG I G    E 
Sbjct: 395 TRHKDAIYK--------AMNSINDAIKGLEDHMSYDFIGVDLKDAWDSLGFINGDTVTED 446

Query: 428 LLDIIFSKFCIGK 440
           LLD IF  FCIGK
Sbjct: 447 LLDTIFKNFCIGK 459


>gi|220909026|ref|YP_002484337.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7425]
 gi|254811474|sp|B8HSJ3|MNME_CYAP4 RecName: Full=tRNA modification GTPase mnmE
 gi|219865637|gb|ACL45976.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7425]
          Length = 460

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 150/466 (32%), Positives = 245/466 (52%), Gaps = 32/466 (6%)

Query: 1   MNHEKETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL 56
           M +  +TI A++T  +P   +I+I+RLSG     + +  FI   ++ +    S R  +G 
Sbjct: 1   MLNPGQTIAAIATAIVPQQGSIAIVRLSGSEAVAIAQRLFIAPGQQVW---ESHRILYGY 57

Query: 57  -----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
                 G+ +D+ LL++  +P S+T ED  EFH HGG+  V  +L+ L       LA PG
Sbjct: 58  VCNPRTGQRVDEALLLLMLAPRSYTKEDVVEFHCHGGMIAVQQVLQ-LCLEAGAVLAQPG 116

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+ RAF +G++DL +AES+ADL+ +++    + ++ G+ G+L     Q       I + 
Sbjct: 117 EFTLRAFLHGRLDLTQAESVADLVGAKSPQAAQAALAGLQGKLIQPLQQLRRTCIDILAE 176

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           IEA +DF  EED+      ++ + I     +++  ++    GE++R G K+ I+G  N G
Sbjct: 177 IEARIDF--EEDLPPLDLNQISSQIQHSLTEVNRILATADRGELLRTGLKVAIVGRPNVG 234

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NA ++ D AIVT++PGTTRDV+   L + G  V++ DTAGIRET D VE+ G++R
Sbjct: 235 KSSLLNAWSRSDRAIVTELPGTTRDVVESYLVVGGIPVQVLDTAGIRETSDQVEQIGVER 294

Query: 292 TFLEVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--- 342
           +    + ADL+LL+ +  +      +   +  +    I +  K DL     +    L   
Sbjct: 295 SHKAAQAADLVLLVIDAQTGWTAEDQAIYTQVQERSLILVINKIDLVDQAFQPQACLPDP 354

Query: 343 ------ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MAS 394
                  ++   +G+E+L + I S +   + +        ++R    L++    LE +  
Sbjct: 355 ALTYLCTAAAQNQGIEDLESAILSKVQGGELEGANLDWAINQRQAAALTRAKLSLENVQE 414

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                  LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 415 TIANQLPLDFWTIDLREAIRALGEITGEEVTESVLDQIFSRFCIGK 460


>gi|15605431|ref|NP_220217.1| tRNA modification GTPase TrmE [Chlamydia trachomatis D/UW-3/CX]
 gi|166154040|ref|YP_001654158.1| tRNA modification GTPase TrmE [Chlamydia trachomatis 434/Bu]
 gi|166154915|ref|YP_001653170.1| tRNA modification GTPase TrmE [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237803128|ref|YP_002888322.1| tRNA modification GTPase TrmE [Chlamydia trachomatis B/Jali20/OT]
 gi|237805049|ref|YP_002889203.1| tRNA modification GTPase TrmE [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311527|ref|ZP_05354097.1| tRNA modification GTPase TrmE [Chlamydia trachomatis 6276]
 gi|255317828|ref|ZP_05359074.1| tRNA modification GTPase TrmE [Chlamydia trachomatis 6276s]
 gi|255349090|ref|ZP_05381097.1| tRNA modification GTPase TrmE [Chlamydia trachomatis 70]
 gi|255503627|ref|ZP_05382017.1| tRNA modification GTPase TrmE [Chlamydia trachomatis 70s]
 gi|255507306|ref|ZP_05382945.1| tRNA modification GTPase TrmE [Chlamydia trachomatis D(s)2923]
 gi|301335241|ref|ZP_07223485.1| tRNA modification GTPase TrmE [Chlamydia trachomatis L2tet1]
 gi|14195259|sp|O84704|MNME_CHLTR RecName: Full=tRNA modification GTPase mnmE
 gi|205829133|sp|B0B8S4|MNME_CHLT2 RecName: Full=tRNA modification GTPase mnmE
 gi|205829134|sp|B0BAF3|MNME_CHLTB RecName: Full=tRNA modification GTPase mnmE
 gi|3329152|gb|AAC68293.1| Thiophene/Furan Oxidation Protein [Chlamydia trachomatis D/UW-3/CX]
 gi|165930028|emb|CAP03511.1| tRNA modification GTPase [Chlamydia trachomatis 434/Bu]
 gi|165930903|emb|CAP06465.1| tRNA modification GTPase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231273349|emb|CAX10264.1| tRNA modification GTPase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274362|emb|CAX11157.1| tRNA modification GTPase [Chlamydia trachomatis B/Jali20/OT]
 gi|289525742|emb|CBJ15223.1| tRNA modification GTPase [Chlamydia trachomatis Sweden2]
 gi|296435314|gb|ADH17492.1| tRNA modification GTPase TrmE [Chlamydia trachomatis E/150]
 gi|296436242|gb|ADH18416.1| tRNA modification GTPase TrmE [Chlamydia trachomatis G/9768]
 gi|296437171|gb|ADH19341.1| tRNA modification GTPase TrmE [Chlamydia trachomatis G/11222]
 gi|296438102|gb|ADH20263.1| tRNA modification GTPase TrmE [Chlamydia trachomatis G/11074]
 gi|296439031|gb|ADH21184.1| tRNA modification GTPase TrmE [Chlamydia trachomatis E/11023]
 gi|297140603|gb|ADH97361.1| tRNA modification GTPase TrmE [Chlamydia trachomatis G/9301]
 gi|297748829|gb|ADI51375.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Chlamydia trachomatis D-EC]
 gi|297749709|gb|ADI52387.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Chlamydia trachomatis D-LC]
          Length = 444

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 156/457 (34%), Positives = 237/457 (51%), Gaps = 37/457 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRIL 61
            +TI A++T     +I+I+R+SGP    + + I          AS     G    +   +
Sbjct: 4   NDTITAIATPPGEGSIAIVRVSGPDAISISDRIFSGN--IAGYASHTAHLGTVSHNAVCI 61

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGI----AVVNGILEELAKMPNLRLANPGEFSRRA 117
           D+ L++V  +P SFTGED  EF  HGG      +VN +L E A     R A PGEFS+RA
Sbjct: 62  DQALVLVMRAPRSFTGEDIVEFQCHGGYFACSQIVNALLAEGA-----RAALPGEFSQRA 116

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGKIDL++AE++  LI+++     R++     G  S         +    ++IE   D
Sbjct: 117 FLNGKIDLIQAEAIQQLIAADNIDAFRIAQNQFQGHTSQAISSISSLIIEALAYIEVLAD 176

Query: 178 FSEEE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F EE+ + ++   K  + + L + +++ S   +G+    +  G  IV+ G  NAGKSS+ 
Sbjct: 177 FPEEDIETEDSLPKHRIMEALSITDELLSSFDEGQR---LAQGTSIVLAGLPNAGKSSIL 233

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL +K+ AIVTDIPGTTRD+L  +  L+G  +++ D+AG+RET+++VEKEGI R    +
Sbjct: 234 NALTQKNRAIVTDIPGTTRDILEENWVLQGKNLRLIDSAGLRETENLVEKEGIARAREAM 293

Query: 297 ENADLILLLKEINSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHL---ISSFTGEG 350
             A+ IL + +  S+    FP  +     I +  K D+ S    E       +S+ TGEG
Sbjct: 294 SQAEGILWVVDA-SQPLPEFPTILYQKPTILLWNKCDIVSPPQIEVPFQQISVSAKTGEG 352

Query: 351 LEELINKIKSILSN----KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLD 403
           L EL   ++  L+     K  K+ F + +    L H   T     +    E    +C   
Sbjct: 353 LLELKQALQKWLNTTQLGKSSKI-FLVSARHHSLLHSVYTCLTAALNGFTEHLPNEC--- 408

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            IA +LR A  S+G ++G    E +L  IFSKFCIGK
Sbjct: 409 -IALDLRQALHSIGNLSGSEVTENVLGEIFSKFCIGK 444


>gi|34483365|emb|CAE10363.1| PUTATIVE TRNA MODIFICATION GTPASE TRME [Wolinella succinogenes]
          Length = 432

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/435 (31%), Positives = 229/435 (52%), Gaps = 17/435 (3%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           +++++LSG    ++   + ++    PR A+L   +  +  ++D+ +LI F +P S+T E+
Sbjct: 1   MAVVKLSGSRALEIALKLSRRDHLQPRHATLANLWNREDEMMDEAILIYFKAPHSYTAEE 60

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HGG  +   I++E A     R+A  GEF+ RAF NG+IDL +AE++  LI +++
Sbjct: 61  VVEIQCHGGTLIARKIIQE-ALALGARVARAGEFTYRAFLNGRIDLSQAEAIGKLIEAKS 119

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           +   ++ ++ + GEL          L  I ++ E  +D++EE+   +  ++ ++  I  +
Sbjct: 120 DESYKVLLKQLKGELGRYVEGVRGSLVEILAYAEVSIDYAEEDLPSDLEAR-MVEKIERI 178

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             D+       K    +  GYK+ I+G  N GKSSL NAL   + AIV+DIPGTTRD + 
Sbjct: 179 AEDLERIYQGSKRRSSLVEGYKLAIIGRPNVGKSSLLNALLLWERAIVSDIPGTTRDTIE 238

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL--------KEINSK 311
             L L  + V+I DTAGIRE  D +EK GI+RT L ++ +D++L L         E    
Sbjct: 239 ESLHLGNHWVRIVDTAGIREAQDAIEKIGIERTLLALKESDMVLALFDSSQSLSPEDEQI 298

Query: 312 KEI--SFPKNIDFIFIGTKSD----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           KE+  +  +N   + +  KSD    L  +  E Y H   S    G+EEL++ + S L  +
Sbjct: 299 KELLRAHQENRRILVLFNKSDLSRELQDSELESYPHRYISAKEGGVEELLSLLASWLDEQ 358

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425
                  + S +R L  +   +  L+ A     +  L++ A +++ A   L  IT   + 
Sbjct: 359 GGGEELMLTS-ERQLLCVKSALGELKEARDRLIEGELELFAYHIQGALKELSLITRPYET 417

Query: 426 EQLLDIIFSKFCIGK 440
            +LLD++F +FC+GK
Sbjct: 418 SELLDVMFGQFCLGK 432


>gi|227878343|ref|ZP_03996300.1| tRNA modification GTP-binding protein TrmE [Lactobacillus crispatus
           JV-V01]
 gi|256843835|ref|ZP_05549322.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 125-2-CHN]
 gi|256849610|ref|ZP_05555042.1| thiophene and furan oxidation protein [Lactobacillus crispatus
           MV-1A-US]
 gi|262046278|ref|ZP_06019241.1| tRNA modification GTPase TrmE [Lactobacillus crispatus MV-3A-US]
 gi|312984011|ref|ZP_07791359.1| tRNA modification GTPase TrmE [Lactobacillus crispatus CTV-05]
 gi|227862079|gb|EEJ69641.1| tRNA modification GTP-binding protein TrmE [Lactobacillus crispatus
           JV-V01]
 gi|256613740|gb|EEU18942.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 125-2-CHN]
 gi|256713726|gb|EEU28715.1| thiophene and furan oxidation protein [Lactobacillus crispatus
           MV-1A-US]
 gi|260573608|gb|EEX30165.1| tRNA modification GTPase TrmE [Lactobacillus crispatus MV-3A-US]
 gi|310894513|gb|EFQ43587.1| tRNA modification GTPase TrmE [Lactobacillus crispatus CTV-05]
          Length = 461

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/461 (32%), Positives = 252/461 (54%), Gaps = 30/461 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST      ISI+R+SG    ++ + + K +     P   ++ Y   +D   G
Sbjct: 7   EFDTIAAISTPIGEGGISIVRMSGEDAIKIADEVFKGEDLSKVPTH-TIHYGHIIDPDTG 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RAF
Sbjct: 66  KTIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSH-GARMADPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AES+ D++ ++T+  R++++  ++G L         ++ +  + +E ++D+
Sbjct: 125 VNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILNTLANVEVNIDY 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D    ++K++ +    + + I+  +   + G+I+RNG    I+G  N GKSSL N 
Sbjct: 185 PEY-DADTVTAKQMADTSRSVIDKINRLLKTAQEGKILRNGLATAIVGRPNVGKSSLLNY 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  T+D VEK G++R+   +E 
Sbjct: 244 LTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVERSKKALER 303

Query: 299 ADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISS------ 345
           ADL+LLL + +       +  I   K+   I I  KSDL     T E + L  S      
Sbjct: 304 ADLVLLLIDASQALTAEDQALIEATKDKKRIVILNKSDLGQKITTTEMEKLTGSDVISTS 363

Query: 346 ----FTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKD 399
                  + LEELINK+  + + N   ++   + +++R    L +  + LE +    E  
Sbjct: 364 ILKEQNLDALEELINKLFFAGIENSNDQI---MVTNQRQASLLHKAKKELEDVIQAVEDG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 VPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|163814995|ref|ZP_02206382.1| hypothetical protein COPEUT_01148 [Coprococcus eutactus ATCC 27759]
 gi|158449678|gb|EDP26673.1| hypothetical protein COPEUT_01148 [Coprococcus eutactus ATCC 27759]
          Length = 459

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 146/465 (31%), Positives = 243/465 (52%), Gaps = 36/465 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI--- 60
           +++TI A++TG   + + IIR+SG    ++ + + + +    + ++++ +    G+I   
Sbjct: 3   KEDTIAAITTGISNAGVGIIRISGDRACEITDRVFQAENKKKKASNMKSYTAAFGKIYDG 62

Query: 61  ---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +L+V  +P ++T ED  E   HGGI V+  IL+ L      R A PGEF++RA
Sbjct: 63  DDLIDESILLVMKAPHTYTCEDVCELQCHGGIVVLRKILD-LVLRNGARAAEPGEFTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F  G+ID+ +AES+  LI+++ +   R S++ + G L +      +K+ +  +FIE+ LD
Sbjct: 122 FLGGRIDMSQAESVMSLINAKNDFAVRTSVDQLQGRLKNTIVNMREKILYNVAFIESALD 181

Query: 178 FSEEEDVQNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
             E   +  F  K   +++DIL     +   I+    G+I+  G   VI+G  NAGKSSL
Sbjct: 182 DPEHYSLDGFPDKLRMIIDDILI---QVEGLINTFDNGKILSEGINTVIVGKPNAGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N    +D AIVTD+ GTTRD L+  +++ G  + I DTAGIRETDD+VEK G+ +    
Sbjct: 239 LNMFVGEDRAIVTDMAGTTRDTLSEIVNVRGITLNIIDTAGIRETDDLVEKIGVDKAIKS 298

Query: 296 VENADLILLLK------EINSKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDH 341
           V+ ADL+L +       + N ++ I   ++ + I I  KSDL           Y +    
Sbjct: 299 VDKADLVLYVVDGSVELDENDQRIIEKIRDKNVIVIINKSDLEIKIERDAICRYIDAEVI 358

Query: 342 LISSFTGEGLEELINKIKSIL---SNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
            +S+ TG+G EEL + +  +    S  +  +L  +   HK  L      ++ +    +  
Sbjct: 359 QLSAMTGDGSEELYDMLNKMFFEGSLSYNDQLYITNARHKNELVCTKNALKKV----IES 414

Query: 398 KDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D G+  D  + ++  A   LG I G    + L D IF  FC+GK
Sbjct: 415 IDMGMEEDFFSIDMMDAYEHLGLIIGETARDDLADKIFKDFCMGK 459


>gi|46445656|ref|YP_007021.1| tRNA modification GTPase TrmE [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|81829092|sp|Q6MFA3|MNME_PARUW RecName: Full=tRNA modification GTPase mnmE
 gi|46399297|emb|CAF22746.1| probable GTP-binding protein in thiophene and furan oxidation
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 458

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 154/452 (34%), Positives = 236/452 (52%), Gaps = 22/452 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63
           ETI A++T      ++IIR+SG    +V   I        R  +  Y   +   G  +D 
Sbjct: 12  ETIAAIATPPGEGGVAIIRISGDQSLEVAAKIFSGPIFSYRSHTAHYGQIYNSSGEHVDD 71

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L+++     S+TGE++ E H HGG  +   +LE +      R A PGEF+ +A+ NGKI
Sbjct: 72  VLVLIMLGKRSYTGENTVEIHCHGGSLITRKVLE-VVLAAGARAALPGEFTFKAYMNGKI 130

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ +LI ++ E     +   + G LS+    +   LT I + +EA +DF EE  
Sbjct: 131 DLAQAEAVQELICAKNEKALGAAESQLKGSLSNRVLAFQSTLTQIAAILEAWVDFPEE-G 189

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++  +  E+  D+     D+   ++    G+I+ +G  I ++G  N GKSSL NAL  KD
Sbjct: 190 LEFATMDELDQDLERTAKDMEKLVNSFHNGKILHDGLSICLIGCPNVGKSSLMNALLDKD 249

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV+ IPGTTRDVL   L L G  +K+SDTAGIRE ++ VE+EGI+R+   ++ ADLIL
Sbjct: 250 RAIVSPIPGTTRDVLEDHLRLNGLHIKLSDTAGIREANESVEQEGIRRSKKAMQEADLIL 309

Query: 304 LLKEINS---KKEISFPKNIDF---IFIGTKSDLYSTYTE--EYDHLISSFTGE--GLEE 353
           L+ + +    K++    K + F   I I  K DL        E   L+     E  GLEE
Sbjct: 310 LVLDAHKGLEKEDQELLKQVPFHKTIVIWNKIDLNPRNLPCLEVPFLVHLSAKEKIGLEE 369

Query: 354 LINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAEN 408
           L   I +I+   ++  P S    + ++ RH   L +++  L    +        + +  +
Sbjct: 370 LHQTIDTII---WQDGPPSKEEILITNVRHKEALIESIESLRRVKIGLRHQVSPEFLTLD 426

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +R + + LGKI G    E +L  IFSKFCIGK
Sbjct: 427 MRQSLLELGKIIGTNISEDILSAIFSKFCIGK 458


>gi|295693883|ref|YP_003602493.1| tRNA modification GTPase mnme [Lactobacillus crispatus ST1]
 gi|295031989|emb|CBL51468.1| tRNA modification GTPase mnmE [Lactobacillus crispatus ST1]
          Length = 461

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/461 (32%), Positives = 252/461 (54%), Gaps = 30/461 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST      ISI+R+SG    ++ + + K +     P   ++ Y   +D   G
Sbjct: 7   EFDTIAAISTPIGEGGISIVRMSGEDAIKIADEVFKGEDLSKVPTH-TIHYGHIIDPDTG 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RAF
Sbjct: 66  KTIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSH-GARMADPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AES+ D++ ++T+  R++++  ++G L         ++ +  + +E ++D+
Sbjct: 125 VNGRIDLTQAESVMDIVRAKTDKARQVAIGQLAGGLLHKIQAMRQEILNTLANVEVNIDY 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D    ++K++ +    + + I+  +   + G+I+RNG    I+G  N GKSSL N 
Sbjct: 185 PEY-DADTVTAKQMADTSRSVIDKINRLLKTAQEGKILRNGLATAIVGRPNVGKSSLLNY 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  T+D VEK G++R+   +E 
Sbjct: 244 LTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVERSKKALER 303

Query: 299 ADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISS------ 345
           ADL+LLL + +       +  I   K+   I I  KSDL     T E + L  S      
Sbjct: 304 ADLVLLLIDASQALTAEDQALIEATKDKKRIVILNKSDLGQKITTTEMEKLTGSDVISTS 363

Query: 346 ----FTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKD 399
                  + LEELINK+  + + N   ++   + +++R    L +  + LE +    E  
Sbjct: 364 ILKEQNLDALEELINKLFFAGIENSNDQI---MVTNQRQASLLHKAKKELEDVIQAVEDG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 VPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|238926048|ref|YP_002939566.1| tRNA modification GTPase TrmE [Eubacterium rectale ATCC 33656]
 gi|238877725|gb|ACR77432.1| tRNA modification GTPase TrmE [Eubacterium rectale ATCC 33656]
          Length = 458

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 156/462 (33%), Positives = 248/462 (53%), Gaps = 30/462 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-----RKASLRYFFGLDG 58
           + +TI A++T   PS I IIR+SG     V + I K K         +  ++ Y F  DG
Sbjct: 2   QNDTIAAIATAMSPSGIGIIRISGDDALSVIDRIYKSKNNKKKISACQSHTIHYGFIYDG 61

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ ++++  +P ++T ED+ E   HGG+ V+  +LE + K    R A PGEF++RA
Sbjct: 62  DEKIDEVMVLLMKAPNTYTREDTVEIDCHGGVYVMKRVLEAVIK-NGARPAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D+I+S+ +   + S+  + G +     Q  ++L H  +FIE+ LD
Sbjct: 121 FLNGRIDLSQAESVIDVINSKNDFALKSSLSQLGGAVLGSIRQIREQLLHEIAFIESALD 180

Query: 178 FSEEEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
             E   +  +  K   + D  +++  I   +     G I++ G   VI+G  NAGKSSL 
Sbjct: 181 DPEHISLDGYPQKLRAIVDNEYME--IDGLLKTSDNGRILKEGINTVIIGKPNAGKSSLL 238

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L   D AIVTDI GTTRDVL   +++ G  + + DTAGIR T+D+VEK G+K+     
Sbjct: 239 NVLVGTDRAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDVVEKIGVKKAMEHA 298

Query: 297 ENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLISS 345
             ADLI+ + +       N    I+F K+   + +  KSDL S  + +      D  + S
Sbjct: 299 NGADLIIYVVDSSVALDDNDYDIINFIKDKKAVILLNKSDLASKVSADDIKKLVDKTVIS 358

Query: 346 FTGE---GLEELINKIKSILSN---KFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            + +   G++EL + IK +  +    F  ++  +   HK+ L    ++++ L M S+++ 
Sbjct: 359 VSAKESSGIDELSDTIKEMFFDGEVSFNDEIYITNIRHKKLLSDAKESLK-LVMNSIDD- 416

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D   D  + +L  A  SLG I G    + L+D IFSKFC+GK
Sbjct: 417 DMPEDFYSIDLMSAYESLGLIIGESVEDDLMDEIFSKFCMGK 458


>gi|160893418|ref|ZP_02074203.1| hypothetical protein CLOL250_00967 [Clostridium sp. L2-50]
 gi|156864813|gb|EDO58244.1| hypothetical protein CLOL250_00967 [Clostridium sp. L2-50]
          Length = 459

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/466 (31%), Positives = 247/466 (53%), Gaps = 42/466 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI----- 60
           +TI A++TG   + + IIR+SG +  +V   + +      +  S++ +    G++     
Sbjct: 5   DTIAAIATGMGNAGVGIIRISGKNAVEVASKVFRPANKEKKIESMKSYTAAFGQVYDGDK 64

Query: 61  -LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+G+L++  +P ++T ED  E   HGG+ V+  +L  + K    RLA PGEF++RAF 
Sbjct: 65  ELDEGILLLMRAPHTYTCEDVCELQCHGGMVVLRNVLAAVIK-NGARLAEPGEFTKRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AES+ DLIS++ +   + S+  + G+L +      +++ +  +FIE+ LD  
Sbjct: 124 NGRIDLSQAESVMDLISAKNDFAVKSSLMQLRGDLKNQIIDMREQILYNVAFIESALDDP 183

Query: 180 EEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           E   +  +  K  L  I+  L +++   +     G I++ G K VI+G  NAGKSSL N 
Sbjct: 184 EHYSLDGYPQK--LQTIVDKLGDNVDKLLRTFDNGRILKEGIKTVIVGKPNAGKSSLLNM 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
              ++ AIVTDI GTTRD L   +++ G ++ I DTAGIR+T+DIVEK G+ +       
Sbjct: 242 FLGENRAIVTDIAGTTRDTLEEVVNINGIILNIVDTAGIRDTEDIVEKMGVDKALEFASQ 301

Query: 299 ADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--------IS 344
           ADLIL +       + N K+ IS  K  + I +  K+DL +   + +           +S
Sbjct: 302 ADLILYVIDGSVPLDDNDKQIISEIKGKNVIAVMNKNDLQTVVDKMWITCELGCDIVELS 361

Query: 345 SFTGEGLEELINKIKSILSNKF--------KKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           + TG+G E+L +    +L++KF         +L  +   HK  L    +++  +  +   
Sbjct: 362 ASTGDGKEKLYD----LLNDKFFSGELDYNDQLYITNARHKEELMKTEESLLKVRESI-- 415

Query: 397 EKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D G+  D  + +L  A   LG I G  + + L D IF +FC+GK
Sbjct: 416 --DMGMEEDFFSIDLMDAYEHLGLIIGETNRDDLADKIFEEFCMGK 459


>gi|171913044|ref|ZP_02928514.1| putative tRNA modification GTPase [Verrucomicrobium spinosum DSM
           4136]
          Length = 451

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/455 (32%), Positives = 231/455 (50%), Gaps = 26/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDGRIL 61
           +TI A+ST    +AIS++RLSG    QV + + K K+      PR          +G ++
Sbjct: 3   DTIAAISTAFGEAAISVLRLSGEHALQVAQRVFKGKRVLEALEPRVQHFGNILDEEGAVV 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  LL  F +P S+TGED  E   HGGI V   I E L      R A  GEF++RAF NG
Sbjct: 63  DSVLLSHFRAPASYTGEDVVEISCHGGILVTRRIFE-LLMHHGARAAEAGEFTQRAFVNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSS----LYGQWIDKLTHIRSFIEADLD 177
           K+DL +AE++ DLI +++EM  + + + + G L      L    I+ L H+ ++I    D
Sbjct: 122 KMDLTQAEAVMDLIHAQSEMALKAATQQLEGRLGKESEHLRADLIELLAHVEAYI----D 177

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F +E D+   +   +   +  +   + S +     G I+R+G + VI G  N GKSSL N
Sbjct: 178 FPDE-DIDPDTGAAMQKRLASIHLRVGSLLDTAHHGRILRSGARTVICGEPNVGKSSLLN 236

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L+  D AIV+   GTTRD +   L + G    + DTAGIRE    +E+ GI RT  E+ 
Sbjct: 237 LLSGFDRAIVSAEAGTTRDTIEEVLHIHGLPFVLVDTAGIREGAGSIEQSGIDRTNREMA 296

Query: 298 NADLIL-----LLKEINSKKEISFPKNIDFIFIGTKSD--LYSTYTEEYDH---LISSFT 347
            AD+IL      L    +++         ++ I  KSD  L+ ++  + +    L+S   
Sbjct: 297 RADVILEVVDGSLPRDAARRVPGLEDRRGYLLILNKSDLGLHPSWLPDVERGAILLSCEN 356

Query: 348 GEGLEELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDII 405
            EGL+ L   ++ ++ +         +  + RH     +    L   A+  ++    + +
Sbjct: 357 QEGLDPLRAAMRDAVWTGAGAGNSQMVAINARHQACFQRAAESLVHGAAALKRGEAPEFV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  LR A  ++G++TG VDVE++L  IFS+FCIGK
Sbjct: 417 AVFLREAMEAVGEVTGRVDVEEILGAIFSRFCIGK 451


>gi|253581093|ref|ZP_04858353.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847629|gb|EES75599.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 474

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 156/460 (33%), Positives = 245/460 (53%), Gaps = 32/460 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK------KPFPRKASLRYFFGLDGR- 59
           TI A+ST    S I IIR+SG +   V   I + K      K  P   ++ Y +  DG  
Sbjct: 21  TIAAISTAMSASGIGIIRISGENAMDVISRIYRSKGGKKKIKEVPTH-TIHYGYIYDGEE 79

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ L+++  +P +FTGED+ E   HGG+  +  +L+ + K     +A PGEF++RAF 
Sbjct: 80  LIDEVLVMIMHAPRTFTGEDTVEIDCHGGVYAMQRVLDTVLK-NGAEIAEPGEFTKRAFL 138

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++ D+I ++ E   R SM+ + G +        +KL +  ++IE+ LD  
Sbjct: 139 NGRMDLSQAEAVMDVIQAKNEYALRSSMDQLRGSVQKAIRDIREKLIYHIAYIESALDDP 198

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +  +  +E+L  +   + ++   +     G++I+ G + VILG  NAGKSSL N L
Sbjct: 199 EHISLDGYP-QELLEVVDNEQKEVKRLLKTSSDGKMIQEGIQTVILGKPNAGKSSLLNLL 257

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTDI GTTRD+L   + L G  +KI DTAGIRET DIVEK G+ R     + A
Sbjct: 258 IGENRAIVTDIAGTTRDILEEYITLHGISLKIIDTAGIRETKDIVEKIGVDRAREMAQKA 317

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLY-----STYTEEYDH---LISS 345
           DLIL + +       N ++ +        I +  K+DL          E+  H    IS+
Sbjct: 318 DLILYVVDSSVPLDENDEEIMEMLTGKKAIILYNKTDLQPEIQPEILKEKTGHPVIPISA 377

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
              +G+ EL  +IK +      ++ F+     ++ RH   L +  R L++   N  + G+
Sbjct: 378 KEEKGITELEEQIKDMFFG--GEISFNDEVYITNARHKAALEEADRSLDLVR-NSIEMGM 434

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D  + +L  A  +LGKI G    E L++ IFSKFC+GK
Sbjct: 435 PEDFFSIDLMNAYENLGKILGESVGEDLVNEIFSKFCMGK 474


>gi|312897434|ref|ZP_07756858.1| tRNA modification GTPase TrmE [Megasphaera micronuciformis F0359]
 gi|310621495|gb|EFQ05031.1| tRNA modification GTPase TrmE [Megasphaera micronuciformis F0359]
          Length = 459

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 233/456 (51%), Gaps = 26/456 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----DGRI 60
           TI A++T    S + IIR+SG   + + E  F  K K  F         FG      GR 
Sbjct: 8   TIAAIATATGESGVGIIRISGTEAYNIGEKIFRSKGKTRFKDFKDRTIHFGTIVDEKGRE 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+++   P S+T ED  E   HGG   V+GIL+ L      RLA  GEF++RAF N
Sbjct: 68  IDEALVLIMKRPHSYTAEDVLEIQCHGGRQSVSGILK-LVLRSGARLARAGEFTQRAFMN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL++AE++ D+I +++      ++  + G LS +      +LT   + +E  +D+ E
Sbjct: 127 GRIDLVQAEAVMDVIQAKSSKGLSTALSQLEGRLSGIVAAMRTELTDFITRLEVTVDYPE 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+++    ++   +  +   +   +     G IIR+G  + I G  NAGKSSL N L 
Sbjct: 187 E-DLEDIVVHDLEKTMRCMMERMEQMLKDSSKGRIIRDGMTVAIAGAPNAGKSSLLNYLL 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDIPGTTRD L   + ++G   ++ DTAGIRET D VE  G+ +    +E AD
Sbjct: 246 AEDRAIVTDIPGTTRDALEEWVSIQGIPFRLVDTAGIRETTDTVEAIGVTKARNYIETAD 305

Query: 301 LILLLKE-----INSKKEI--SFPKNIDFIFIGTKSDLYSTYT----EEYD---HLISSF 346
            +L+LK+      +  K +  S P     I + TKSDL         E Y      +SS 
Sbjct: 306 TVLILKDRTQPFSDEDKALINSVPDGKGAIVL-TKSDLKPLLECKDLEVYGLPVFSLSSK 364

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DI 404
           TG+G+  L   + S            + S+ RH+  + Q++  L+ A       G+  D+
Sbjct: 365 TGDGISLLEEYLVSRSGESGAGENEVLLSNMRHIELMRQSLNALKRAE-ETMYAGMPTDL 423

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I  +LR A   LG +TG    + ++  IFS+FC+GK
Sbjct: 424 ILVDLREAWELLGAVTGETVQDDMVGEIFSRFCLGK 459


>gi|227543714|ref|ZP_03973763.1| tRNA modification GTP-binding protein TrmE [Lactobacillus reuteri
           CF48-3A]
 gi|300908779|ref|ZP_07126242.1| tRNA modification GTPase TrmE [Lactobacillus reuteri SD2112]
 gi|227186282|gb|EEI66353.1| tRNA modification GTP-binding protein TrmE [Lactobacillus reuteri
           CF48-3A]
 gi|300894186|gb|EFK87544.1| tRNA modification GTPase TrmE [Lactobacillus reuteri SD2112]
          Length = 477

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/465 (32%), Positives = 252/465 (54%), Gaps = 31/465 (6%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD-- 57
           N E +TI A+ST      ISIIR+SG    +V + I K K    + A+    +G  +D  
Sbjct: 18  NSENDTIAAISTPVGEGGISIIRISGDDAVKVAQRIYKGKD-LAKVATHTINYGHIVDPD 76

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ ++ V  +P ++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 77  TDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQ-LVLSFGARMAEPGEFTKR 135

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL ++E++ DLI ++T+   ++++  + G+LS L       +  + + +E ++
Sbjct: 136 AFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLAQVEVNI 195

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  ++K +      ++  I   +   K G+++R+G    I+G  N GKSSL 
Sbjct: 196 DYPEYDAVEEMTTKLLKEKAEDIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNVGKSSLL 255

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  +D AIVT++ GTTRDV+   +++ G  +K+ DTAGIR+T+D VEK G++R+   +
Sbjct: 256 NSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVERSRKAL 315

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDHL----- 342
             ADL+LLL  I+S  E++          K+   I I  K+DL      EE   L     
Sbjct: 316 GAADLVLLL--IDSSNELTDEDRQLLEATKDKQRIIILNKTDLPRKVDLEELKSLAGKSA 373

Query: 343 ---ISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLE--MASL 395
               S    EG+++L  +I  +  NK         + ++ RH+  L Q    L   +  +
Sbjct: 374 VIETSIVNHEGMDQLGEQIGHMFFNKGIESNQNNVMVTNARHIGLLHQANDALSDVLKGI 433

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           N+    +D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 434 NDG-MPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 477


>gi|150024725|ref|YP_001295551.1| tRNA modification GTPase TrmE [Flavobacterium psychrophilum
           JIP02/86]
 gi|205829151|sp|A6GXB2|MNME_FLAPJ RecName: Full=tRNA modification GTPase mnmE
 gi|149771266|emb|CAL42735.1| tRNA modification GTPase TrmE [Flavobacterium psychrophilum
           JIP02/86]
          Length = 462

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 156/466 (33%), Positives = 252/466 (54%), Gaps = 39/466 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDG-RI 60
           +TI A++T +   AI++IR+SG +   +    F     K   ++ S     G   DG ++
Sbjct: 5   DTIVALATPSGAGAIAVIRISGNNAITIASEVFQSVSGKDITKQKSHTLHLGHITDGTKV 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ LL +F    S+TGE++ E   HG   +   I++ L +    R+A  GEF+ R+F N
Sbjct: 65  LDQVLLSIFKGTNSYTGENTIEISCHGSTYIQQQIIQLLLR-KGCRMAQAGEFTLRSFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLISS+ E   +++M+ M G  S+   +  ++L +  S IE +LDF+E
Sbjct: 124 GKMDLSQAEAVADLISSDNEAAHQIAMQQMRGGFSNEIAKLREELLNFASLIELELDFAE 183

Query: 181 EEDVQNFSSKEVLNDIL-----FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           E DV+ F+ +   +D+L      LK  I S      +G +I+NG  + I+G  N GKS+L
Sbjct: 184 E-DVE-FADRTQFDDLLNRIEFVLKRLIDSF----AVGNVIKNGIPVAIVGEPNVGKSTL 237

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  ++ AIV++I GTTRD +  +L + G   +  DTAGIRET D+VE  GIK+TF +
Sbjct: 238 LNTLLNEERAIVSEIAGTTRDTIEDELVIGGIGFRFIDTAGIRETKDVVESIGIKKTFEK 297

Query: 296 VENADLILL-------------LKEINSKKEISFPKNIDFIFIGTKSD-LYSTYTEEYDH 341
           +E + +++              LK    K +  FP     I IG KSD L  T  +    
Sbjct: 298 IEQSQVVVFLFDSSEFKISGLKLKVALEKIKNQFPLK-PLIIIGNKSDKLSETEIQNIKT 356

Query: 342 ------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                 LIS+    G+E+L N++ S ++    +   +I ++ RH   L + +  ++    
Sbjct: 357 EIPEILLISAKEKLGVEDLKNQLLSFVNTGALRNNQTIVTNTRHYDSLLKALDEIQKVKF 416

Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + +   D++A +++ A    G+ITG V  ++LL  IF+ FCIGK
Sbjct: 417 GLQTNLPSDLMAIDIKQALYYFGEITGQVTNDELLGNIFANFCIGK 462


>gi|291539801|emb|CBL12912.1| tRNA modification GTPase trmE [Roseburia intestinalis XB6B4]
          Length = 457

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 157/461 (34%), Positives = 247/461 (53%), Gaps = 33/461 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLDG-R 59
           +TI A++T    S I IIR+SG     + + I      KK    P   ++ Y    DG  
Sbjct: 4   DTIAAIATAMSSSGIGIIRISGDEAVGIVDRIFSMKNGKKLSDMPTH-TIHYGHIKDGDE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ ++++  +P+S+T ED+ E   HGG+ V+  +LE + K    R A PGEF++RAF 
Sbjct: 63  VIDEVMVVLMRAPKSYTKEDTVEIDCHGGVYVMKRVLETVIKY-GARPAEPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AES+ D+I ++ E   + S + +SG LS+   +  +KL H  +FIE+ LD  
Sbjct: 122 NGRIDLAQAESVIDIIHAKNEFALKSSEQQLSGSLSAAVRKVREKLLHEIAFIESALDDP 181

Query: 180 EEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           E   +  +   E L+ I+   + +I   ++    G+I++ G   VI+G  NAGKSSL N 
Sbjct: 182 EHISLDGYP--ETLHGIVEEAQKEIQKLLANSDNGKILKEGISTVIIGKPNAGKSSLLNT 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVTDI GTTRDVL   ++L G ++ + DTAGIRETDD+VEK G+ R    +  
Sbjct: 240 LVGEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDVVEKIGVDRAKKYLNE 299

Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE--YDHL------IS 344
           ADL + + + +++ +      +   K+   I +  KSDL      E    HL      IS
Sbjct: 300 ADLAIYVVDTSTQLDENDFEIMELLKDRKAIVLLNKSDLTPVTDSESIRKHLDKKMIAIS 359

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           +    G+EEL   I+ +      ++ F+     ++ RH   L +    L +   +  D G
Sbjct: 360 AKEQTGIEELEETIREMFFT--GEVTFNDEVYITNIRHKTALQEARNSLNLVVQSILD-G 416

Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  D  + +L  A   LG I G    + L++ IFSKFC+GK
Sbjct: 417 MPEDFYSIDLMNAYEELGSIVGEAVEDDLVNEIFSKFCMGK 457


>gi|293380887|ref|ZP_06626923.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 214-1]
 gi|290922560|gb|EFD99526.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 214-1]
          Length = 461

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/461 (32%), Positives = 252/461 (54%), Gaps = 30/461 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST      ISI+R+SG    ++ + + K +     P   ++ Y   +D   G
Sbjct: 7   EFDTIAAISTPIGEGGISIVRMSGEDAIKIADEVFKGEDLSKVPTH-TIHYGHIIDPDTG 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RAF
Sbjct: 66  KTIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSH-GARMADPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AES+ D++ ++T+  R++++  ++G L         ++ +  + +E ++D+
Sbjct: 125 VNGRIDLTQAESVMDIVRAKTDKARQVAIGQLAGGLLHKIQAMRQEILNTLANVEVNIDY 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D    ++K++ +    + + I+  +   + G+I+RNG    I+G  N GKSSL N 
Sbjct: 185 PEY-DADTVTAKQMADTSKSVIDKINRLLKTAQEGKILRNGLATAIVGRPNVGKSSLLNY 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  T+D VEK G++R+   +E 
Sbjct: 244 LTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVERSKKALER 303

Query: 299 ADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISS------ 345
           ADL+LLL + +       +  I   K+   I I  KSDL     T E + L  S      
Sbjct: 304 ADLVLLLIDASQALTAEDQALIEATKDKKRIVILNKSDLGQKITTTEMEKLTGSDVISTS 363

Query: 346 ----FTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKD 399
                  + LEELINK+  + + N   ++   + +++R    L +  + LE +    E  
Sbjct: 364 ILKEQNLDALEELINKLFFAGIENSNDQI---MVTNQRQASLLHKAKKELEDVIQAVEDG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 VPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|253563506|ref|ZP_04840963.1| tRNA modification GTPase mnmE [Bacteroides sp. 3_2_5]
 gi|251947282|gb|EES87564.1| tRNA modification GTPase mnmE [Bacteroides sp. 3_2_5]
          Length = 465

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 154/475 (32%), Positives = 255/475 (53%), Gaps = 51/475 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFG--LDGR 59
           ++TI A++T A   AI  IR+SGP    +   I    K  K    +      FG   +G 
Sbjct: 3   QDTICAIAT-AQGGAIGSIRVSGPEAITITSRIFTPAKSGKLLSEQKPYTLTFGRIYNGE 61

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EMIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL++  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELTTLREKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +     ++ + ++    +G +I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRRLADEIEEVIARLANSFSVGNVIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET D +E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQKLD 298

Query: 298 NADLILLLKEINSKKEIS---------FPK--NIDFIFIGTKSDLYSTYTEEYDHLISSF 346
            A+++L +  I+S   IS          P+  +   I +  K +L +    + + L S F
Sbjct: 299 QAEIVLWM--IDSADAISQLTLLSDKILPRCEHKQLILVFNKVELINET--QKNELASQF 354

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHK----RHLYHLSQ------TVRYLE----- 391
           +    E + ++I+SI  +  ++L       +     HL  ++Q       +R+ E     
Sbjct: 355 S----EHIGSEIESIFISAKQRLHTDELQQRLVAAAHLPTVTQNDVIVTNIRHYEALTRA 410

Query: 392 MASLNEKDCGLDI------IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +++    GLD+      +++++R     L  I G V  + +L  IF+ FCIGK
Sbjct: 411 LDAIHRVQEGLDVNISGDFLSQDIRECIFHLSDIAGEVTNDMVLQNIFAHFCIGK 465


>gi|94971754|ref|YP_593802.1| tRNA modification GTPase TrmE [Candidatus Koribacter versatilis
           Ellin345]
 gi|205829050|sp|Q1IHC2|MNME_ACIBL RecName: Full=tRNA modification GTPase mnmE
 gi|94553804|gb|ABF43728.1| tRNA modification GTPase trmE [Candidatus Koribacter versatilis
           Ellin345]
          Length = 454

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 142/452 (31%), Positives = 241/452 (53%), Gaps = 19/452 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60
           +TI A++T      I ++RL+GP    V   + +         + R  F   +D   G  
Sbjct: 5   DTIVAIATPPGRGGIGVVRLAGPEARTVALLMLRLANGKAELEAQRAHFAELVDPESGER 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ ++  F  P S+T +D  E   HG   ++  ++E LA    +R+A+PGEF+ RAF N
Sbjct: 65  LDEVVVAYFAKPHSYTTDDIVEISCHGSPVLLARVVE-LALAKGVRMADPGEFTMRAFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI S+T  Q R++ + + G +S        KL ++ + +EA +DF++
Sbjct: 124 GRIDLTQAEAVRDLIESQTLYQARVAAQQLGGSVSRRLQPTKQKLVNLIAVLEAGIDFAD 183

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           + DV    +KE +  I  +   ++        G+++  G  + I+G  N GKSSLFN L 
Sbjct: 184 D-DVSVLPAKEAIARIAEVHEPLAKLKEGFAFGKVVHEGLTLAIVGRPNVGKSSLFNRLV 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++D AIVT IPGTTRD++T  + L G  V + DTAGIRE+ D  E  GI+++   + +AD
Sbjct: 243 ERDRAIVTAIPGTTRDLVTETVSLGGIPVHLVDTAGIRESHDEAESIGIQKSREAMADAD 302

Query: 301 LILLLKEINSK-------KEISFPKNIDFIFIGTKSDL--YSTYTEEYDHLI--SSFTGE 349
           L+L++ + +++       + IS       I +  K DL  +S    +   ++  S+ +GE
Sbjct: 303 LVLVVVDAHAETGHELDHQLISAAAERSAILVENKIDLGRHSVANGKSIPVVRTSAVSGE 362

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAEN 408
           G+ EL  +I  ++S +  +      ++ R    ++ ++  LE A+   E     +++  +
Sbjct: 363 GIAELREQILRMVSGESGREESGFLTNIRQHQLVTDSLAALEAATNALEVRVPHEMVLMD 422

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L  A   L  ITG    + +L++IFS FCIGK
Sbjct: 423 LYNALRPLDDITGATTADDILNLIFSTFCIGK 454


>gi|317476897|ref|ZP_07936140.1| tRNA modification GTPase TrmE [Bacteroides eggerthii 1_2_48FAA]
 gi|316907072|gb|EFV28783.1| tRNA modification GTPase TrmE [Bacteroides eggerthii 1_2_48FAA]
          Length = 461

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/469 (31%), Positives = 250/469 (53%), Gaps = 43/469 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI---- 60
           ++TI A++T A   AI  IR+SGP   ++   I        R    + +    GRI    
Sbjct: 3   QDTICAIAT-AQGGAIGCIRVSGPEAIEITSRIFTPAISNKRLEESKPYTLTFGRIHEGS 61

Query: 61  --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+ +F +P S+TGE+S E   HG   ++  +L+ L K    R+A PGE+++RAF
Sbjct: 62  EIIDEVLVSLFRAPHSYTGENSTEITCHGSAYILQKVLQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       ++L H  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTTLRNQLLHFTSLIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHI----SQGKLGEIIRNGYKIVILGHSNAGKSS 234
           S+ E+++ F+ +   +++  L ++I   I    +   +G  I+NG  + I+G +NAGKS+
Sbjct: 181 SDHEELE-FADR---SELCLLADNIEKVIVRLVNSFSVGNAIKNGVPVAIIGETNAGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF 
Sbjct: 237 LLNVLLNEEKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQ 296

Query: 295 EVENADLIL-LLKEINSKKEIS------FP--KNIDFIFIGTKSDLYSTYTEEYDH---- 341
           +++ A+++L ++   N++ +I+       P  +    I +  K DL +    +       
Sbjct: 297 KLDQAEIVLWMIDATNAQTQITQLSSQLLPRCRAKQLILVYNKVDLVANIQNDIPTNFPD 356

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLS---QTVRYLE 391
                +IS+   E +EEL   +  I S     +  +  I ++ RH   L+   + +  ++
Sbjct: 357 DVKSIVISAKKREHIEELQQML--ITSAHLPTITQNDVIVTNVRHYEALNNALEAIHRVQ 414

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +N  +   D +++++R     L  I G V  + +L  IF  FCIGK
Sbjct: 415 EGLVN--NLSGDFVSQDIRECIFHLSDIAGEVTNDMVLHNIFQHFCIGK 461


>gi|325685111|gb|EGD27242.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 461

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 258/465 (55%), Gaps = 38/465 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST      ISI+R+SG     +   + K +  +  P   ++ Y   +D   G
Sbjct: 7   EFDTIAAISTPLGEGGISIVRVSGEDAAAIVNRLFKGEDLEKVPSH-TINYGHIVDPATG 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ +  V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RAF
Sbjct: 66  QVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQ-LLLANGARMADPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174
            NG+IDL +AES+ D+I ++T+  R+++++ +SG    E+  L  + +D L ++    E 
Sbjct: 125 VNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRVLRQEILDVLANV----EV 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E  D +  +++++L     +   I   +   + G+I+RNG K  I+G  N GKSS
Sbjct: 181 NIDYPEY-DEEEVTAQKMLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  T+D VEK G++R+  
Sbjct: 240 LLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIGVERSKK 299

Query: 295 EVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHL 342
            +  ADLILLL    +E+    ++ +        I +  K DL    T      E    +
Sbjct: 300 AIAQADLILLLLDGSQELTEEDRRLLELTAGKKRIIVLNKMDLGQKLTAAEIAKESGSEV 359

Query: 343 ISS--FTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYL-EMASL 395
           IS+     E L+EL   IK +    FK +  S    + +++R    L++  + L ++AS 
Sbjct: 360 ISTSIMMKENLDELEALIKKLF---FKGIENSNDQVLVTNQRQAGLLAKAKQQLADVASG 416

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            E    +D++  +   A  SLG+ITG   +++L++ +FS+FC+GK
Sbjct: 417 LESGMPVDLVQIDFTGAWESLGEITGDSALDELINDLFSQFCLGK 461


>gi|297623423|ref|YP_003704857.1| tRNA modification GTPase TrmE [Truepera radiovictrix DSM 17093]
 gi|297164603|gb|ADI14314.1| tRNA modification GTPase TrmE [Truepera radiovictrix DSM 17093]
          Length = 455

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 151/461 (32%), Positives = 236/461 (51%), Gaps = 39/461 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDG--- 58
           +TI A++T     A+ I+RLSGP  + V E  F  +   P       R  +G  +D    
Sbjct: 8   DTIAAIATAPGVGAVGIVRLSGPESYAVAERLFAPRSGAPVAALPPGRVVYGRIVDAATD 67

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ LL+ F +P S+TGED  E   HGG AV+  +L+ L      RLA PGEF+ RAF
Sbjct: 68  ETVDEALLLTFRAPHSYTGEDVLELQTHGGPAVLRRVLD-LCTAHGARLAGPGEFTLRAF 126

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            +G++DL++AE++ DL++++++  RR +  G+S  L+   G   D +T +   I+A  D+
Sbjct: 127 LSGRLDLVQAEAVLDLVNAQSDSARRNAALGLSKALTEQLGLIQDDITRVYGDIQAVFDY 186

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            +E  V   + +  L   L     +   +S  + G + + G ++ ++G  NAGKSSL NA
Sbjct: 187 PDE-GVPEAAFQAPLERAL---GRVRGLLSTARAGRVAQRGARLALIGRPNAGKSSLLNA 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L     +IV+  PGTTRD L   +D+ G  V   DTAGIR+T D VE  G++      E+
Sbjct: 243 LLGYRRSIVSSTPGTTRDYLEAPVDILGVPVTAVDTAGIRDTGDAVEASGVEAAKEIAEH 302

Query: 299 ADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH-------- 341
           ADL LLL + ++           E+S  +    + + +KSDL   +              
Sbjct: 303 ADLGLLLLDSSTPLAPDDRALVGELSPAR---LLVVASKSDLPPAWDPCAAQRELGVGPV 359

Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
             +S+ TGEGL  L   I+  L          + +++RH+  L     +LE A    K  
Sbjct: 360 LRVSAATGEGLGALKEAIRERLVGDAGGSALWL-TNERHIAALEAVREHLERA----KAA 414

Query: 401 GLDIIAENLRLASVSLGKITGCVDV-EQLLDIIFSKFCIGK 440
             D+ A +L  A  +LG++TG  +V E+ L  IF+ FC+GK
Sbjct: 415 PDDLAALDLEDALKTLGELTGRGEVAEETLAHIFANFCVGK 455


>gi|307718005|ref|YP_003873537.1| tRNA modification GTPase [Spirochaeta thermophila DSM 6192]
 gi|306531730|gb|ADN01264.1| tRNA modification GTPase [Spirochaeta thermophila DSM 6192]
          Length = 449

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/451 (33%), Positives = 238/451 (52%), Gaps = 27/451 (5%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG--- 64
           I A++T    SAI++IR SG  C +  + + + +K   R +S+R +    G ++D G   
Sbjct: 8   IVALATPWGRSAIAVIRTSGVGCLEALDPLFRGRK---RPSSMRGYSLAHGALVDPGTGE 64

Query: 65  -----LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
                LL VF +P S+TGED+AE   HG  A V  I+  L      R A PGEF+ RAF 
Sbjct: 65  MLDEVLLAVFRAPHSYTGEDAAEISCHGSPAGVERIMRTLLAH-GFRAAEPGEFTLRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL EAE++ +++S+ T     L++  + G L +      +K+  + + +E  LD+ 
Sbjct: 124 NGKVDLTEAEAVHEVVSARTANAHTLALHRLEGRLHARIDAIKEKIASVVAEVEVQLDYP 183

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE DV++  S  ++ + L   +++   ++  ++G + R G ++V+ G +NAGKSSLFN  
Sbjct: 184 EE-DVEHPVSAHLIQEAL---HEVDGLLATYRVGRLYREGVRVVLAGRTNAGKSSLFNLF 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++D AIV+++ GTTRD L   + L+G  V + DTAGIR+  D VE EGI+RT   + +A
Sbjct: 240 MREDRAIVSEVHGTTRDYLEGWISLKGVPVLLYDTAGIRDGGDPVETEGIRRTREILSHA 299

Query: 300 DLILLL---KEINSKKEISFPKNI----DFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGL 351
           D ++ L    E  S+ E +    +      I +  K D  +        + +S  TGEG 
Sbjct: 300 DAVIYLVDGTEGFSEGEEALIAELGAERPLIPVWNKVDASAVLPPPEGFIPLSCRTGEGF 359

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENL 409
             L   +  +           +   +R    L +    LE  + +L+ +   LD +A  L
Sbjct: 360 ARLEETLHRVFPEAEGGGAEVVIDSERQRDALVRCRDSLEGGLDALS-RGAPLDALAVYL 418

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             A  +LG+ITG V  E +L+ IFS FC+GK
Sbjct: 419 HDAMEALGEITGEVTREDILERIFSCFCVGK 449


>gi|182412706|ref|YP_001817772.1| tRNA modification GTPase TrmE [Opitutus terrae PB90-1]
 gi|205415785|sp|B1ZWP5|MNME_OPITP RecName: Full=tRNA modification GTPase mnmE
 gi|177839920|gb|ACB74172.1| tRNA modification GTPase TrmE [Opitutus terrae PB90-1]
          Length = 452

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 136/458 (29%), Positives = 247/458 (53%), Gaps = 24/458 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   ++TI A++T A  SA++I+R SGP   ++ E I  +  P PR+     +    G I
Sbjct: 1   MPPLEDTIAALATPAGISALAILRASGPDTRRIAEAILGRT-PLPRRIQRVDYRDRAGHI 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L + FP P S+TGED  E   HG   +   +L++L      R A PGEF++RAF N
Sbjct: 60  LDEVLCVFFPQPRSYTGEDLLEISTHGNPFIAQRVLQDLFAR-GCRPAGPGEFTQRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ DLI ++++     +   + G L     + ID++  + + +EA +DF +
Sbjct: 119 GRLDLSQAEAVMDLIHAQSDRALAAANHQLRGSLGRHVQRIIDRVVRVLAQVEAYIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+ + +   +  ++   +++    I+  + G +IR+G K VI+G  N GKSSL N L 
Sbjct: 179 E-DLPSSNRDTLAAELEMARHEAEQLIATQRYGNLIRDGIKTVIVGAPNVGKSSLLNRLV 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ A+V+  PGTTRD +   + +  + +++ DTAG+  +   +E  GI ++  ++ +AD
Sbjct: 238 GRERALVSAEPGTTRDFIEERIAVGEHCIRLVDTAGLNVSPAPLEALGIHKSLEQLADAD 297

Query: 301 LILLLKEINSKKEISFPKNI-------DFIFIGTKSDLYS-----TYTEEYDHLI--SSF 346
           L+L + ++ S  E S P  +       + + +  K DL +        +++  ++  S+ 
Sbjct: 298 LVLAIVDL-SDPEPSLPPELAKRLDPKNTLLVANKIDLCAGKCVLDTVDQWFGMVFCSAK 356

Query: 347 TGEGLEELINKIKSILSNKFK----KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
            G GL++L   I    +++++    +   ++ +   H   L+       +  L   D   
Sbjct: 357 IGVGLDDLFGAIGR-WADQWQITVGQDVIAVNARHSHALALALEALDAALDKLRSGDAA- 414

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++A +LR A ++LG I G VD E++LD +F+ FCIGK
Sbjct: 415 ELLASDLRSALLALGDIAGRVDNERVLDELFATFCIGK 452


>gi|315039281|ref|YP_004032849.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1112]
 gi|325957755|ref|YP_004293167.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus 30SC]
 gi|312277414|gb|ADQ60054.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1112]
 gi|325334320|gb|ADZ08228.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus 30SC]
 gi|327184388|gb|AEA32835.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1118]
          Length = 461

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 153/469 (32%), Positives = 253/469 (53%), Gaps = 46/469 (9%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD-- 57
           E +TI A+ST      ISI+R+SG    ++   + K     K P     ++ Y   +D  
Sbjct: 7   EFDTIAAISTPIGEGGISIVRMSGEDAVKIANEVFKGANLAKVP---THTIHYGHIIDPD 63

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G  +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++R
Sbjct: 64  TGETIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNRILQLLLSH-GARMADPGEFTKR 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFI 172
           AF NG+IDL +AES+ D++ ++T+  R+++ + + G    ++ ++  + +D L ++    
Sbjct: 123 AFVNGRIDLTQAESVMDIVRAKTDKARKVAEKQLEGGLLHKIRAMRQEILDTLANV---- 178

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E ++D+ E  D    ++K++ +    +   I   +S  + G+I+RNG    I+G  N GK
Sbjct: 179 EVNIDYPEY-DADTVTAKQMADTANSVIKKIDRLLSTAQEGKILRNGLATAIVGQPNVGK 237

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  TDD VEK G++R+
Sbjct: 238 SSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVERS 297

Query: 293 FLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
              +E ADL+LLL  I++ +E        I   K+   I I  KSDL    T   D +  
Sbjct: 298 KKALERADLVLLL--IDASQELTDEDKALIDETKDKKRIIILNKSDLGQKLT--VDQMKQ 353

Query: 345 SFTGEGLEELINKIKSI--LSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLE-- 391
               E +   I K K++  L     KL FS         + +++R    L +  + L+  
Sbjct: 354 MTGSEVISTSILKEKNLDQLEEVISKLFFSGIENSNDQVMVTNQRQTSLLQKAKKELQDV 413

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + ++N+    +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 414 VQAVNDG-VPVDIAQIDFTGAWDTLGEITGESAPDELITTLFSQFCLGK 461


>gi|218129883|ref|ZP_03458687.1| hypothetical protein BACEGG_01465 [Bacteroides eggerthii DSM 20697]
 gi|217987993|gb|EEC54318.1| hypothetical protein BACEGG_01465 [Bacteroides eggerthii DSM 20697]
          Length = 461

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 148/469 (31%), Positives = 250/469 (53%), Gaps = 43/469 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI---- 60
           ++TI A++T A   AI  IR+SGP   ++   I        R    + +    GRI    
Sbjct: 3   QDTICAIAT-AQGGAIGCIRVSGPEAIEITSRIFTPAISNKRLEESKPYTLTFGRIHEGS 61

Query: 61  --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+ +F +P S+TGE+S E   HG   ++  +L+ L K    R+A PGE+++RAF
Sbjct: 62  EIIDEVLVSLFRAPHSYTGENSTEITCHGSAYILQKVLQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       ++L H  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTTLRNQLLHFTSLIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHI----SQGKLGEIIRNGYKIVILGHSNAGKSS 234
           S+ E+++ F+ +   +++  L ++I   I    +   +G  I+NG  + I+G +NAGKS+
Sbjct: 181 SDHEELE-FADR---SELCLLADNIEKVIVRLVNSFNVGNAIKNGVPVAIIGETNAGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF 
Sbjct: 237 LLNVLLNEEKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQ 296

Query: 295 EVENADLIL-LLKEINSKKEIS------FP--KNIDFIFIGTKSDLYSTYTEEYDH---- 341
           +++ A+++L ++   N++ +I+       P  +    I +  K DL +    +       
Sbjct: 297 KLDQAEIVLWMIDATNAQTQITQLSSQLLPRCRAKQLILVYNKVDLVANIQNDIPTNFPD 356

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLS---QTVRYLE 391
                +IS+   E +EEL   +  I S     +  +  I ++ RH   L+   + +  ++
Sbjct: 357 DVKSIVISAKKREHIEELQQML--ITSAHLPTITQNDVIVTNVRHYEALNNALEAIHRVQ 414

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +N  +   D +++++R     L  I G V  + +L  IF  FC+GK
Sbjct: 415 EGLVN--NLSGDFVSQDIRECIFHLSDIAGEVTNDMVLQNIFQHFCVGK 461


>gi|205422284|sp|A5UY19|MNME_ROSS1 RecName: Full=tRNA modification GTPase mnmE
          Length = 461

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 150/464 (32%), Positives = 232/464 (50%), Gaps = 36/464 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD--GRILD 62
           +TI A++T      I I+R+SG    ++ E I    +P   K   +RY   +D  G ++D
Sbjct: 5   DTIAAIATPPGEGGIGIVRISGRDALKILERIFVPVRPGRWKPYQMRYGRVVDQNGAVVD 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L +    P SFT ED+AE  VHGG  VV  +L++       R A PGEF+ RAF NG+
Sbjct: 65  EALAVFMRGPRSFTAEDTAEISVHGGPLVVERVLQQALAA-GARAAAPGEFTMRAFLNGR 123

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AE+  D+I++ T     L+   + G LS    +  D L    ++  A +DF E+E
Sbjct: 124 IDLAQAEATLDIITARTTTALALAEAQLGGWLSQELHRIRDLLMDPLAYCTALVDFPEDE 183

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                  +++   +      + + ++  + G I R G +  ++G  NAGKSSL NAL + 
Sbjct: 184 ----VDPQDIETPLTAAVQALDALVASAQHGIIYRQGARAALIGRPNAGKSSLLNALLRV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVT IPGTTRD L     L G  V ++DTAGI E+DD VE+ G+ R+   V  ADL 
Sbjct: 240 DRAIVTPIPGTTRDTLEETASLGGVPVVLTDTAGIVESDDPVERLGVARSRQAVRLADLA 299

Query: 303 LLLKEIN---------------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342
           LL+ +++                K+ I     ID   I     + +    EY+ +     
Sbjct: 300 LLVVDVSLPVADDDREIVALTEEKRTILTLNKID--LIDADRSIIAARQREYEQIRGKAF 357

Query: 343 -----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
                +S+ TG+GL+EL   +  +L          + ++ RH   L++   +   A    
Sbjct: 358 DAMVTVSALTGQGLDELGATVARLLLGAPIAADGRLVTNARHRDALARAADHARDALTGF 417

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++    D++A +L  A  ++G++TG    E LL  IFS+FCIGK
Sbjct: 418 QQGVSPDLLAVDLTAAINAIGEVTGESVGEDLLHAIFSRFCIGK 461


>gi|282877893|ref|ZP_06286702.1| tRNA modification GTPase TrmE [Prevotella buccalis ATCC 35310]
 gi|281299894|gb|EFA92254.1| tRNA modification GTPase TrmE [Prevotella buccalis ATCC 35310]
          Length = 469

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 145/456 (31%), Positives = 244/456 (53%), Gaps = 28/456 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPF----PRKASLRYFFGLDGRI 60
           TI A+ST A   AI++IRLSG     + +  F+ K         P+     +    DG +
Sbjct: 20  TICALSTPA-GGAIAVIRLSGNDAINIADKVFVSKSNHRLTEAKPQTLHFGHLTNQDGEV 78

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ VF SP S+TGE++ E   HG   V++ IL+   +    R ANPGE+++RAF N
Sbjct: 79  IDEVLVSVFRSPHSYTGENAVEISCHGSQYVISQILKTFIQ-NGCRQANPGEYTQRAFMN 137

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI+S      +++M  + G  S       ++L  I S +E +LDFS+
Sbjct: 138 GKMDLSQAEAVADLIASTNRATHQMAMSQLKGHFSDELALLRNQLLKITSLLELELDFSD 197

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+++     E+L+    +   + +     + G+  + G  + I+G +N GKS+L N L 
Sbjct: 198 HEELEFADRTELLDLAQTIDQRLYTLARSFETGKAYKQGVAVAIVGKTNVGKSTLLNQLL 257

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIV++I GTTRDV+    +++G   +  DTAGIR T+D +E+ GI+RT+ ++  A 
Sbjct: 258 KEEKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTAGIRSTNDEIERLGIERTYKKLNEAR 317

Query: 301 LIL-LLKEINSKKEIS----FPKNIDFIFIGTKSDLYSTYTEEYDHLISSF-------TG 348
           +IL L+ E  ++ EI     + ++   I +  K D+ +   +   + +S+        T 
Sbjct: 318 IILWLVDEQPNRSEIQEMLEYCEDKQVILVQNKIDIRTIPDKLSTNNLSTIQISAKLGTN 377

Query: 349 EG-LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EKDCGLDII 405
            G LE L+ +  +I       +  +   H   L H  +++  +    +N  + D   D+I
Sbjct: 378 IGQLENLLYQKANIPEITENDVIITSARHYDALIHAKESITRV----INGLKADLSGDLI 433

Query: 406 AENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
           AE+LR+    L  ITG  +   ++L+ IF  FCIGK
Sbjct: 434 AEDLRVCLDQLADITGGQITTPEVLENIFKHFCIGK 469


>gi|265762625|ref|ZP_06091193.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_16]
 gi|263255233|gb|EEZ26579.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_16]
          Length = 465

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 156/476 (32%), Positives = 257/476 (53%), Gaps = 53/476 (11%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFG--LDGR 59
           ++TI A++T A   AI  IR+SGP    +   I    K  K    +      FG   +G 
Sbjct: 3   QDTICAIAT-AQGGAIGSIRVSGPEAITITGRIFTPAKSGKLLSEQKPYTLTFGRIYNGE 61

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EMIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL++  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELTTLREKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +     ++ + ++    +G +I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRRLADEIEEVIARLANSFSVGNVIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET D +E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQKLD 298

Query: 298 NADLILLLKEINSKKEIS---------FPK--NIDFIFIGTKSDLYSTYTEEYDHLISSF 346
            A+++L +  I+S   IS          P+  +   I +  K +L +    + + L S F
Sbjct: 299 QAEIVLWM--IDSADAISQLTLLSDKILPRCEHKQLILVFNKVELINET--QKNELASQF 354

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKR-----HLYHLSQ------TVRYLE---- 391
           +    E + ++I+SI  +  ++L ++    +R     HL  ++Q       VR+ E    
Sbjct: 355 S----EHIGSEIESIFISAKQRL-YTDELQQRLVAAAHLPAVTQNDVIVTNVRHYEALTR 409

Query: 392 -MASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +++    GL      D +++++R     L  I G V  + +L  IF+ FCIGK
Sbjct: 410 ALDAIHRVQEGLDANISGDFLSQDIRECIFHLSDIAGEVTNDMVLQNIFAHFCIGK 465


>gi|257127029|ref|YP_003165143.1| tRNA modification GTPase TrmE [Leptotrichia buccalis C-1013-b]
 gi|257050968|gb|ACV40152.1| tRNA modification GTPase TrmE [Leptotrichia buccalis C-1013-b]
          Length = 455

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 155/458 (33%), Positives = 241/458 (52%), Gaps = 29/458 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGR-ILD 62
           +TI A+ST      I+IIR+SG   F++ + I  KK P        L Y F  DG+  +D
Sbjct: 4   DTIAAISTPKGEGGIAIIRISGDKSFEILDKIFIKKNPNADLGFYKLNYGFIKDGKKTID 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + + +   +P S+T ED  E + HGG  V   +LE L      R A  GEF++RAF NG+
Sbjct: 64  EVMAVRLKAPRSYTCEDIVEINCHGGTLVSEKVLE-LVLRNGARHAESGEFTKRAFMNGR 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AE++ D+I  +TE    LS++ + G+L     ++   L  I + +   LD+ EE 
Sbjct: 123 IDLSQAEAVMDIIQGKTEKSVSLSLDQLRGDLRDKVNEFKKALLDITAHVNVVLDYPEE- 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            + +    E+ +++  +  + +  I     G+ I+ G K VI+G  N GKS+L NAL  +
Sbjct: 182 GIDDPLPVELRDNLEKVYEEANRLIDSYNTGKKIKEGIKTVIVGKPNVGKSTLLNALLHE 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT I GTTRDV+   ++++G  + + DTAGIR+TDDIVE  G++++   +E ADL+
Sbjct: 242 ERAIVTHIAGTTRDVIEEIINIKGIPLVLVDTAGIRKTDDIVENIGVEKSKQFIEKADLV 301

Query: 303 LLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL-----ISSFTGE 349
           LL+ + + K E             N   I +  K DL      E  +L     IS+    
Sbjct: 302 LLVLDASKKLETEDIEVITKIKENNKKVIVLLNKIDLNKKINLEGYNLENIVEISAKDNI 361

Query: 350 GLEELINKIKSIL-----SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-- 402
           G+E++  KI S +      N  +KL  +   HK  L      +R +        D GL  
Sbjct: 362 GIEDMQEKIYSYIVEEDVENSSEKLIITNIRHKTALEKTKDAIRNI----FETIDMGLPM 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+I+ +L+ A  SL +ITG +  E +LD +F+ FC+GK
Sbjct: 418 DLISVDLKEALDSLSEITGEISSEDILDHVFANFCVGK 455


>gi|195953055|ref|YP_002121345.1| tRNA modification GTPase TrmE [Hydrogenobaculum sp. Y04AAS1]
 gi|195932667|gb|ACG57367.1| tRNA modification GTPase TrmE [Hydrogenobaculum sp. Y04AAS1]
          Length = 438

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 156/451 (34%), Positives = 241/451 (53%), Gaps = 33/451 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A +T  L SAISI+RLSG +C  +       + P PR A  R  F ++ + LD  + 
Sbjct: 4   TIVAPATPVLKSAISILRLSGFNCIDIANRFLHIENPKPRYA-YRTSFYVNNKELDDVIA 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I + +P S+TGED  E   HG   ++   +E L        A+PGEF++RAF NGK+ L 
Sbjct: 63  IYYKAPRSYTGEDMLEIFFHGNPIIIEKAIETLVDY-GCSFASPGEFTKRAFLNGKMTLD 121

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           EA S+  LIS+ TE     ++  + G+ SS       +   I + IEAD++F  E D+Q 
Sbjct: 122 EASSVELLISANTEKALENALNMLKGKFSSFIEGLRKEFIRIIANIEADIEFGYE-DIQP 180

Query: 187 FSSKEVLNDILFLKNDISSHISQ--GKLGE--IIRNGYKIVILGHSNAGKSSLFNALAKK 242
               E+  +I    ND+   + +   KL E   + +G K+ I+G  N GKSSLFN L +K
Sbjct: 181 LDVNEIKKEI----NDLICRLEEFHKKLKEQSYLYDGIKVAIVGKPNVGKSSLFNTLLQK 236

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             AIV+DIPGTTRD +   L++ G+ VK+ DTAGIR+TD+ +E+EGI      ++ A ++
Sbjct: 237 RRAIVSDIPGTTRDYIEDRLEINGFPVKLVDTAGIRKTDNPIEREGINIAIEHMKEAHVV 296

Query: 303 LLLKEINSKKEI--------SFPKNIDFIFIGTKSDL-YSTYTEEYDH----LISSFTGE 349
           L +  ++  K++           KN++ +    KSDL  ++ T ++      +IS    E
Sbjct: 297 LFV--VDGSKDLEEEDYFIYDIVKNLNTLVALNKSDLGINSKTLDFFKNNAIIISIRNQE 354

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            +E L NK+  +L      +  S    KR+ + +++ +  L+ A L  K    +++   +
Sbjct: 355 NVEYLKNKVLHMLDLADDGIYVS----KRNKFLVAKALESLKEAVLQNK---TEVMMLYI 407

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R A   L +I G +  E +LD IFS FCIGK
Sbjct: 408 REALDYLEEILGLIKDEDVLDEIFSTFCIGK 438


>gi|297618522|ref|YP_003703681.1| tRNA modification GTPase TrmE [Syntrophothermus lipocalidus DSM
           12680]
 gi|297146359|gb|ADI03116.1| tRNA modification GTPase TrmE [Syntrophothermus lipocalidus DSM
           12680]
          Length = 460

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 153/473 (32%), Positives = 250/473 (52%), Gaps = 52/473 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR----YFFGL---- 56
           ++TI A++T      I+I+R+SG     + E + +   P P    L+    Y  GL    
Sbjct: 3   EDTIAAIATPLGEGGIAIVRVSGREAVDIVEKVFR---PVPGGKRLKDRGGYTLGLGWIV 59

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
              G  +D+ L+ V   P+S+T ED  E + HGG+      LE + +    RLA PGEF+
Sbjct: 60  DRKGNHVDEVLVTVMRGPKSYTAEDVVEINCHGGVLAAIRCLETVLE-NGARLAEPGEFT 118

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++D+ +AE++ D+I ++TE    ++++ + G L     +  D+L  + + +EA
Sbjct: 119 KRAFLNGRLDISQAEAVIDIIRAKTEKGMSMAVKQLEGMLRKRVAELEDRLVGLNTMVEA 178

Query: 175 DLDFSEE-----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
            +DF EE     E++    ++E+L ++  L       +  G+   + + G K+VI G  N
Sbjct: 179 SIDFPEEVGDLDEEIARQQAQEILRELEGL-------LRAGERNRVYQWGVKVVIAGKPN 231

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKSSL NAL +K  AIVTDIPGTTRD++   ++++G  V I DTAGIRET D+VE+ G+
Sbjct: 232 VGKSSLLNALLRKKKAIVTDIPGTTRDIVEDYINVKGIPVNIMDTAGIRETGDLVERIGV 291

Query: 290 KRTFLEVENADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYT--EEYDH 341
           +R+   +  AD+IL + +     S+++    K +     I +  K DL       EE + 
Sbjct: 292 ERSEEVISEADIILAVLDAGAGISEEDERVAKMVAGRRVIVLVNKEDLEEKRVTLEEVER 351

Query: 342 LISSFTGE-----------GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           L   F G+           GLEEL + I +++L+ K +     I  + R      +    
Sbjct: 352 L---FPGQTVVRGSVKEEIGLEELESAIEEAVLAGKVEAGDEDIMVNLRQEEAFRRVKTS 408

Query: 390 LE--MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +E  +A L E +  LD +A ++  A  +LG+ITG    E +++ IF  +CIGK
Sbjct: 409 MEGFLAGL-ETNTSLDCLAVDIGEALEALGEITGKTLKEDVIERIFRDYCIGK 460


>gi|76789438|ref|YP_328524.1| tRNA modification GTPase TrmE [Chlamydia trachomatis A/HAR-13]
 gi|123606658|sp|Q3KKZ6|MNME_CHLTA RecName: Full=tRNA modification GTPase mnmE
 gi|76167968|gb|AAX50976.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Chlamydia trachomatis A/HAR-13]
          Length = 444

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 156/457 (34%), Positives = 239/457 (52%), Gaps = 37/457 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRIL 61
            +TI A++T     +I+I+R+SGP    + + I          AS     G    +   +
Sbjct: 4   NDTITAIATPPGEGSIAIVRVSGPDAISISDRIFSGN--IAGYASHTAHLGTVSHNAVYI 61

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGI----AVVNGILEELAKMPNLRLANPGEFSRRA 117
           D+ L++V  +P SFTGED  EF  HGG      +VN +L E A     R A PGEFS+RA
Sbjct: 62  DQALVLVMRAPRSFTGEDIVEFQCHGGYFACSQIVNTLLAEGA-----RAALPGEFSQRA 116

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGKIDL++AE++  LI+++     R++     G  S         +    ++IE   D
Sbjct: 117 FLNGKIDLIQAEAIQQLIAADNIDAFRIAQNQFQGHTSQAISSISSLIIEALAYIEVLAD 176

Query: 178 FSEEE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F EE+ + ++   K  + + L + +++ S   +G+    +  G  IV+ G  NAGKSS+ 
Sbjct: 177 FPEEDIETEDSLPKHRIMEALSITDELLSSFDEGQR---LAQGTSIVLAGLPNAGKSSIL 233

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL +K+ AIVTDIPGTTRD+L  +  L+G  +++ D+AG+RET+++VEKEGI R    +
Sbjct: 234 NALTQKNRAIVTDIPGTTRDILEENWVLQGKNLRLIDSAGLRETENLVEKEGIARAREAM 293

Query: 297 ENADLILLLKEINSKKEISFPKNI---DFIFIGTKSDLYSTYTEE--YDHL-ISSFTGEG 350
             A+ IL + +  S+    FP  +     I +  K D+ S    E  +  + +S+ TGEG
Sbjct: 294 SQAEGILWVVDA-SQPLPEFPTILYQKPTILLWNKCDIVSPPQIEVPFQQISVSAKTGEG 352

Query: 351 LEELINKIKSILSN----KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLD 403
           L EL   ++  L+     K  K+ F + +    L H   T     +    E    +C   
Sbjct: 353 LLELKQALQKWLNTTQLGKSSKI-FLVSARHHSLLHSVYTCLTAALNGFTEHLPNEC--- 408

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            IA +LR A  S+G ++G    E +L  IFSKFCIGK
Sbjct: 409 -IALDLRQALHSIGNLSGSEVTENVLGEIFSKFCIGK 444


>gi|1902827|dbj|BAA19450.1| ORF4 [Leptospira interrogans]
 gi|2780770|dbj|BAA24373.1| ORF4; putative [Leptospira interrogans]
          Length = 435

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 146/440 (33%), Positives = 228/440 (51%), Gaps = 29/440 (6%)

Query: 25  LSGPSCFQVCEFICKKKKPF-------PRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
           +SGP    +       K  F       PR A ++  F +  R +D+ L   F SP S+TG
Sbjct: 1   MSGPEALTISSSFLFSKNKFLSPSEILPRTA-IQCVFQIGDRKIDQILFFYFKSPNSYTG 59

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  EFH HG   ++   L+ + +    R A  GEFSRRAF N K+DL E E++  LIS+
Sbjct: 60  EDLCEFHFHGNPILLREALDAIFR-AGARPAKQGEFSRRAFLNEKLDLTEVEAIGRLISA 118

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +  +  L+ + + GE++        +L  +++  EA++DFS E D+   S +E    I 
Sbjct: 119 RSRFELELAQKNVFGEVTRFTSNLRSQLISLKAECEAEIDFSTE-DLTYESLEERKTRIE 177

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +K+   + IS+    E +   ++IV+ G  N GKSSL N L  K+ +I+++IPGTTRD 
Sbjct: 178 NVKSLCQTLISKSSSAEKLIQQFRIVLYGEPNTGKSSLMNVLLGKERSIISEIPGTTRDY 237

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---- 313
           ++ ++ LEG  V++ DTAG+RET D +EK GI+R+  E ++AD+ L L ++ SKKE    
Sbjct: 238 ISEEIFLEGIPVRLVDTAGVRETTDHIEKLGIERSEKEFQSADVRLFLVDV-SKKENWKE 296

Query: 314 ------------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
                       I     ID +      +L+S   +     IS  T EG+  L++ IK  
Sbjct: 297 FINKSRERLEGSILIANKIDILNSSWDRNLFSDVKDLIVLEISCKTKEGISNLLDAIKE- 355

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKIT 420
            + K       +   +R  YH    VR L+    L ++    +I  + +  A   +G++ 
Sbjct: 356 RTGKLGHSEDYVLLEERQRYHFETIVRCLDKTLHLLKEGAPAEIYIQEINYALAEIGEVN 415

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G VD E++L  IFSKFC+GK
Sbjct: 416 GKVDTEEVLGRIFSKFCVGK 435


>gi|295698382|ref|YP_003603037.1| tRNA modification GTPase TrmE [Candidatus Riesia pediculicola USDA]
 gi|291157050|gb|ADD79495.1| tRNA modification GTPase TrmE [Candidatus Riesia pediculicola USDA]
          Length = 465

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 162/465 (34%), Positives = 251/465 (53%), Gaps = 40/465 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A ST      I I+R+SG    QVC+ I K+K   PR A+   F+G   +++D G
Sbjct: 12  QDTIVAQSTPPGIGGIGILRISGTEIDQVCQKILKRKLQ-PRYATYLPFYGEFDQVIDHG 70

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + I F  P SFTGE+  E H HGG  +++ ++E + K P +R+A PGEF++RAF N KID
Sbjct: 71  IAIYFIKPNSFTGENVLELHAHGGQIIIDILMENILKFPRIRVAYPGEFTKRAFLNNKID 130

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQ---WIDKLT-HIRSFIEADLDFSE 180
           L++AES+ +LI + T    R S++ +  E +S + +    I K+   I+S +E  ++F E
Sbjct: 131 LIQAESICELIHANTREAARNSVKYV--EKNSKFSKNLFSIKKMVEEIQSLVEIKINFPE 188

Query: 181 EE---DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           E       N S K + + IL L+N I   I    + E I    KI I+G  N+GKSSL N
Sbjct: 189 ENLSFSKDNLSCK-IQDVILKLENLIDGLIYNSNVSEFI----KISIVGKPNSGKSSLMN 243

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L++K+ +IVT I GTTRD++  ++ + G  V+ISDTAGIR + + +E+ GIK+   E++
Sbjct: 244 ILSEKEASIVTSIRGTTRDIIKENIHIHGVSVQISDTAGIRRSKNEIERIGIKKALKELK 303

Query: 298 NADLILLLKE-INSKKEISFPKNIDFI----FIGTKSDLYSTYTEEYDHL---------- 342
            ++ +L + E +  K   S   NI  I    F  +KS        + D+L          
Sbjct: 304 ESEHVLYVTEDVICKNFFSEKNNILSILKKNFSSSKSFTIIKNKIDIDNLSSGIKVIEGC 363

Query: 343 ----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NE 397
               +SS T +GLE L   +K IL N+   +     S  +H Y L        +  + N 
Sbjct: 364 TVIFLSSKTKDGLEMLKTHLKKILQNR-NHIENKFLS--KHRYRLLLKKSLKHLKKIENV 420

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDV--EQLLDIIFSKFCIGK 440
            +  ++I+AE ++L +  L +I        + +L+ IFS FCIGK
Sbjct: 421 SNYSIEILAEEIKLTNEYLDQIFDGRRYYPQNMLNDIFSNFCIGK 465


>gi|115398542|ref|XP_001214860.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114191743|gb|EAU33443.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 367

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 170/298 (57%), Gaps = 25/298 (8%)

Query: 33  VCEFICKKKK-PFPRKASLRYFFGL-----DGRILDKGLLIV-FPSPESFTGEDSAEFHV 85
           +C  +C K   P PR A++R  +          +LD G L++ FP P++ TGED  EFH+
Sbjct: 1   MCAALCPKGSFPRPRVAAVRALYDPTTPPSSNSVLDSGALVLYFPGPKTVTGEDVLEFHL 60

Query: 86  HGGIAVVNGILEELAKMPN----LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141
           HGG A+V  +L  +++       +R A PGEF+RRAF N ++DL + E+L D ++++TE 
Sbjct: 61  HGGPAIVKSVLTAISRTNRDECLVRYAEPGEFTRRAFLNNRLDLPQIEALGDTLTADTEQ 120

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK---EVLNDILF 198
           QRRL++ G S  LS  Y QW  +L + R  +EA +DF+E++     S +    V + +  
Sbjct: 121 QRRLAVRGASDALSKRYEQWRQQLLYARGELEALIDFAEDQHFDESSDELVHSVASQVQA 180

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L+  I  HI     GE++R+G K+ +LG  NAGKSSL N +  K+ AIV+   GTTRD++
Sbjct: 181 LRVQIELHIQNASKGELLRHGIKVALLGAPNAGKSSLLNRIVGKEAAIVSTEEGTTRDIV 240

Query: 259 TIDLDLEGYLVKISDTAGIRETD-----------DIVEKEGIKRTFLEVENADLILLL 305
            + +DL G+  K+ D AGIR                VEKEGI+R       +D+++ +
Sbjct: 241 DVGVDLSGWYCKLGDMAGIRSEAGNGAGEGPVVIGAVEKEGIRRAKARALESDVVIAV 298


>gi|28379977|ref|NP_786869.1| tRNA modification GTPase TrmE [Lactobacillus plantarum WCFS1]
 gi|300769099|ref|ZP_07078988.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308182180|ref|YP_003926308.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|32171799|sp|Q88RX5|MNME_LACPL RecName: Full=tRNA modification GTPase mnmE
 gi|28272818|emb|CAD65747.1| thiophene and furan oxidation protein ThdF [Lactobacillus plantarum
           WCFS1]
 gi|300493339|gb|EFK28518.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308047671|gb|ADO00215.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 463

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 240/474 (50%), Gaps = 53/474 (11%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDG--- 58
           E +TI A+ST      ISIIR+SG   F V   I K K    R  S    +G  +D    
Sbjct: 6   EFDTIAAISTPPGEGGISIIRISGDQTFNVVTQIFKGKD-LSRVQSHTINYGHIVDPDTH 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ +  V  +P+++T ED  E + HGG+   N IL+ L      R+A PGEF++RAF
Sbjct: 65  QEVDEVMATVMRAPKTYTREDVVEINCHGGLVATNEILQ-LILSHGARMAEPGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ DLI ++T+   ++++  + G+LS L       +  + + +E ++D+
Sbjct: 124 LNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSKLIRHLRQDILDVLAQVEVNIDY 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E + V+  ++K +      +   I+  ++  K G+++R G    I+G  N GKSSL N 
Sbjct: 184 PEYDAVETMTTKMLKEKATEVAQSINQLLATAKQGKVLREGLATAIIGRPNVGKSSLLNH 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVTD+ GTTRDV+   +++ G  +K+ DTAGIR+T+D VEK G++R+   +  
Sbjct: 244 LLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRDTEDKVEKIGVERSRKAIGA 303

Query: 299 ADLIL---------------LLKEINSKKEI------SFPKNIDFIFIGTKSDL------ 331
           ADL+L               LL+E +  K I        P  +D   +    DL      
Sbjct: 304 ADLVLLVLDNSQPLTAEDRELLQETDQSKRIVILNKTDLPARLDQAELAQLVDLSDVLSM 363

Query: 332 ----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
                S  T+    +   F  EG+E   N +              + ++ RH+  L+Q  
Sbjct: 364 SVLEQSGVTQLEQRIAKMFFNEGIESSQNNV--------------MVTNARHIGLLNQAK 409

Query: 388 RYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + L+           +D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 410 QALQDVQTGLAAGMPVDLVQIDMTRCWEFLGQITGDSYEDELLDQLFSQFCLGK 463


>gi|169333910|ref|ZP_02861103.1| hypothetical protein ANASTE_00296 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259475|gb|EDS73441.1| hypothetical protein ANASTE_00296 [Anaerofustis stercorihominis DSM
           17244]
          Length = 458

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 152/471 (32%), Positives = 257/471 (54%), Gaps = 49/471 (10%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFGLD-- 57
           +++TI A++T +    ISIIR+SG   F+VC+ + K KK      P K ++ Y   ++  
Sbjct: 3   KEDTIAAIATPSGYGGISIIRISGSEAFEVCDRVFKMKKGSIFDVP-KNTINYGHIVNKD 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              I+D+ L+     P SFT ED  E + HGG++V   +L  + K    RLA  GEF++R
Sbjct: 62  TNEIIDEVLVSKMCEPHSFTAEDVIEINCHGGMSVTKDVLTLVLK-NGARLAEAGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL++AE+++D+I+++T    + +M  + G+LSS   +    +T++ + +E  +
Sbjct: 121 AFLNGRIDLVQAEAISDIITAKTSNFAKSAMSSLKGDLSSKIDEIKADITNMLARLEVTI 180

Query: 177 DFSE--EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            + E  EED+ N    E++N + +  N I   IS  + GEI+++G K+ I+G  N GKS 
Sbjct: 181 QYPEYDEEDLTNNEIVELINSMKYKLNKI---ISTFEKGEILKDGIKVAIIGKPNVGKSQ 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL  ++ AIVT+  GTTRD++   ++++G  VK  DTAGIR  D  VEK GI ++  
Sbjct: 238 LLNALINENKAIVTEEAGTTRDIVDEVVNIKGVPVKFIDTAGIRNADSKVEKIGIDKSIE 297

Query: 295 EVENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYSTY--TEEYDHL- 342
            +E +++IL    I++ + +           P N + + +  K DL +     + +D+  
Sbjct: 298 MLEESNIILFC--IDTSRALDTEDMDIIKMLPDNKEVLVVLNKMDLNTNVDTVKAFDNYK 355

Query: 343 ---ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
              IS+   EG+E++ NKI  +   ++   +  ++ S+ RH        + L + + ++ 
Sbjct: 356 TVEISALKKEGIEKIENKIYELAGLSEDDGVGNTLVSNIRH--------KNLLIGARDDF 407

Query: 399 DCGLDIIAENLRL---------ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  + +I E L +         A   LG ITG    E ++D IF  FC+GK
Sbjct: 408 DNAIKMINEGLEVDLVEIDINAALYKLGGITGETTSEDIIDEIFKNFCLGK 458


>gi|294155306|ref|YP_003559690.1| tRNA modification GTPase [Mycoplasma crocodyli MP145]
 gi|291600068|gb|ADE19564.1| tRNA modification GTPase [Mycoplasma crocodyli MP145]
          Length = 453

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 145/458 (31%), Positives = 250/458 (54%), Gaps = 30/458 (6%)

Query: 6   ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A+S+G+ +   ISIIR+SGP   ++ + I   K    R  +       + ++LD+ 
Sbjct: 3   DTIAAISSGSKVNQPISIIRISGPDTKKIMKKIFTGKIGEDRTITFGNIINQEQQVLDEV 62

Query: 65  LLIVFPSPE--------SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           L++ F   E        ++ GE+  E + HGG+ V N ILE + K    RLA PGEF+RR
Sbjct: 63  LVMWFLGTEKNNKVEYRNYVGEELVEINCHGGLIVTNLILELILK-NGARLALPGEFTRR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGK+DL++AE++ DLI +++  Q   S++   G+ S +   ++++L  +    E ++
Sbjct: 122 AFLNGKLDLVKAEAIHDLIMAKSSKQATFSVKKFDGKTSKMIESFLEELALLIGLCEINI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +D++   + +++  +  L N+I   ++  +  + +  G K+ +LG  N GKSSL 
Sbjct: 182 DYPEYDDIEEIDNTKMIEKLNILINEIDEILTVSQRSKKVFEGVKVALLGKPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  ++ AIVTDI GTTRD++    +L+G L  + DTAGIRE+ + +E  GI+++F ++
Sbjct: 242 NALISENKAIVTDIAGTTRDIIEASYELDGILFTLVDTAGIRESKEKIEVIGIEKSFEQL 301

Query: 297 ENADLILLLKEINSKKEISFPKNID---------FIFIGTKSDLYSTYTEEYDHL-ISSF 346
           E ADL++ + +  S+KE  F K I          +I +  K DL     ++ + + IS+ 
Sbjct: 302 EKADLVIHILD-PSQKENEFDKKIKDKSKMLNKIYIEVINKDDLILKNKKDKNKIYISAL 360

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNE-KDCGL 402
                +E++N  K I+ N +  +      I ++ R L  +      L  A  N   +   
Sbjct: 361 N----KEILNLEKEIIKN-YSNINLEDERILANTRQLALIEDAKNKLLCAKNNLINNETF 415

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  ++  A   + +I G V+ E LLD +F  FC+GK
Sbjct: 416 DVVIVDIHEAWEKISEIKGVVNKEDLLDSMFKNFCLGK 453


>gi|148657267|ref|YP_001277472.1| tRNA modification GTPase TrmE [Roseiflexus sp. RS-1]
 gi|148569377|gb|ABQ91522.1| tRNA modification GTPase trmE [Roseiflexus sp. RS-1]
          Length = 471

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 150/464 (32%), Positives = 232/464 (50%), Gaps = 36/464 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD--GRILD 62
           +TI A++T      I I+R+SG    ++ E I    +P   K   +RY   +D  G ++D
Sbjct: 15  DTIAAIATPPGEGGIGIVRISGRDALKILERIFVPVRPGRWKPYQMRYGRVVDQNGAVVD 74

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L +    P SFT ED+AE  VHGG  VV  +L++       R A PGEF+ RAF NG+
Sbjct: 75  EALAVFMRGPRSFTAEDTAEISVHGGPLVVERVLQQALAA-GARAAAPGEFTMRAFLNGR 133

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AE+  D+I++ T     L+   + G LS    +  D L    ++  A +DF E+E
Sbjct: 134 IDLAQAEATLDIITARTTTALALAEAQLGGWLSQELHRIRDLLMDPLAYCTALVDFPEDE 193

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                  +++   +      + + ++  + G I R G +  ++G  NAGKSSL NAL + 
Sbjct: 194 ----VDPQDIETPLTAAVQALDALVASAQHGIIYRQGARAALIGRPNAGKSSLLNALLRV 249

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVT IPGTTRD L     L G  V ++DTAGI E+DD VE+ G+ R+   V  ADL 
Sbjct: 250 DRAIVTPIPGTTRDTLEETASLGGVPVVLTDTAGIVESDDPVERLGVARSRQAVRLADLA 309

Query: 303 LLLKEIN---------------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342
           LL+ +++                K+ I     ID   I     + +    EY+ +     
Sbjct: 310 LLVVDVSLPVADDDREIVALTEEKRTILTLNKID--LIDADRSIIAARQREYEQIRGKAF 367

Query: 343 -----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
                +S+ TG+GL+EL   +  +L          + ++ RH   L++   +   A    
Sbjct: 368 DAMVTVSALTGQGLDELGATVARLLLGAPIAADGRLVTNARHRDALARAADHARDALTGF 427

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++    D++A +L  A  ++G++TG    E LL  IFS+FCIGK
Sbjct: 428 QQGVSPDLLAVDLTAAINAIGEVTGESVGEDLLHAIFSRFCIGK 471


>gi|145220471|ref|YP_001131180.1| tRNA modification GTPase TrmE [Prosthecochloris vibrioformis DSM
           265]
 gi|205415794|sp|A4SGR9|MNME_PROVI RecName: Full=tRNA modification GTPase mnmE
 gi|145206635|gb|ABP37678.1| tRNA modification GTPase trmE [Chlorobium phaeovibrioides DSM 265]
          Length = 473

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 149/453 (32%), Positives = 240/453 (52%), Gaps = 35/453 (7%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFGL--DGR-ILDKGLLIVFPS 71
           A++I+R+SG    ++ + + +KK      F         FG   D R ++D+ + +VF +
Sbjct: 25  ALAIVRMSGRGVLEIADRVFRKKGGTAFSFKEAEGFSAHFGTLSDSRGMVDEVIALVFRA 84

Query: 72  PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131
           P SFT ED  EF  HGG  VV  +L+ L      RLA PGEF+RRAF +G+IDLL+AE++
Sbjct: 85  PSSFTMEDMVEFTCHGGPVVVRHLLQALLD-SGCRLAEPGEFTRRAFLSGRIDLLQAEAI 143

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
            ++I + TE   R ++  M G LS    +    L    + +E +LDFSE+ DV+ F S++
Sbjct: 144 GEMIHARTESAFRTAVTQMQGNLSRHLQEMRAGLLQSCALLELELDFSED-DVE-FQSRD 201

Query: 192 VLN-DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
            L  ++  L+ +I   +   + G ++  G   VI G  NAGKS+L NAL   + AIV+ +
Sbjct: 202 ALRLEVGRLQGEILRLVESYREGHLLTEGVAAVIAGRPNAGKSTLLNALLGHERAIVSHM 261

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL---KE 307
           PGTTRD +      E  + +++DTAG+R +D+ VE EGI+R++ ++  ADL+L +    E
Sbjct: 262 PGTTRDYIEECFIHEKTMFRLTDTAGLRHSDEEVEHEGIRRSYRKISEADLMLYIIDSSE 321

Query: 308 INSKKEISFPKNI-------DFIFIGTKSDLYSTYTEEYDHL----------ISSFTGEG 350
            + ++E +  + +         I +  K+DL          L          +++  G+G
Sbjct: 322 GDMQQEAAAARELRQRHPESRMIVVANKTDLAPDAGGMIAQLQSETACPVIAMAASKGDG 381

Query: 351 LEELINKIKSILS--NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAE 407
           L EL + +  ++   +K  +    + S  RH   L      L+ A  L       ++IA 
Sbjct: 382 LNELKSTMAGMVEGLDKLHEASVLVTS-LRHYEALRNAADSLDNALQLITAREPAELIAF 440

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR A   +G+ITG V  ++LL+ IF +FCIGK
Sbjct: 441 ELRSALDYVGEITGKVVSQELLNTIFDQFCIGK 473


>gi|256830922|ref|YP_003159650.1| tRNA modification GTPase TrmE [Desulfomicrobium baculatum DSM 4028]
 gi|256580098|gb|ACU91234.1| tRNA modification GTPase TrmE [Desulfomicrobium baculatum DSM 4028]
          Length = 457

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 150/463 (32%), Positives = 239/463 (51%), Gaps = 29/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FPRKASLRYFFGL--D 57
           MN   +TI A++T     AI I+RLSGPS  ++   +    +P F      +   G   D
Sbjct: 1   MNTNNDTIVAIATPPGQGAIGIVRLSGPSAGEIARSLFHSSRPGFTDFKPYQLHHGQLRD 60

Query: 58  GR--ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           GR   LD+ L    P P SFTGED  E   HGG A++  ++EE       RLA  GEFS+
Sbjct: 61  GRGNFLDEVLAAFMPGPGSFTGEDVVELQCHGGGAILRRVVEECLA-GGARLAEAGEFSK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N ++DL +AE++ +L+ + T +   L+   + G L+   GQ    L  +R  +   
Sbjct: 120 RAFLNTRMDLTQAEAIMELVGAPTAVAVGLAGSKLEGLLAHRIGQLRAGLESVRVQLCVA 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF E+E V+  + +++  DI  ++  ++        G   R+G  +V+ G  NAGKSSL
Sbjct: 180 VDFPEDE-VECLAPQDLARDIAEIREAMAELADNYDRGRCWRDGALVVLAGQVNAGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NA+   + AIVTDIPGTTRD L   + ++G  V++ DTAG+R   D VE  GI+R+   
Sbjct: 239 MNAILGINRAIVTDIPGTTRDYLEESVQIDGLPVRLVDTAGLRAALDSVELLGIERSREL 298

Query: 296 VENADLILLL--KEINSKKE-ISFPKNI-DFIFIGTKSDLYS---TYTEEYDH------L 342
           +  ADL+LL+   E+    E +       + + +  K DL +    +T E          
Sbjct: 299 LARADLVLLVIDSELGPGAEDLDLAAETENLLVVANKMDLVAGEPAWTRESPWKDKELCR 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRH--LYHLSQTVRYLEMASLNEKD 399
           + +  G+G+  L+  I+ +++        + +P+ ++H  L   ++ + +L    L+E  
Sbjct: 359 LCAKHGQGVSGLLAAIRRMVAATGAPEAGTLVPNLRQHTALVRAAEELAHL----LDELA 414

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            GL  DI++  L  A   L +ITG +  E++L  +F  FCIGK
Sbjct: 415 AGLPYDILSVRLDTACAILAEITGEITSEEVLRAVFDGFCIGK 457


>gi|329960747|ref|ZP_08299071.1| tRNA modification GTPase TrmE [Bacteroides fluxus YIT 12057]
 gi|328532462|gb|EGF59260.1| tRNA modification GTPase TrmE [Bacteroides fluxus YIT 12057]
          Length = 461

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 147/464 (31%), Positives = 240/464 (51%), Gaps = 33/464 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FGL---DG 58
           ++TI A++T A   AI  IR+SGP    +   I        +    + +   FG    D 
Sbjct: 3   QDTICAIAT-AQGGAIGCIRVSGPEAIDITSRIFTPAAAGKKLEDCKPYTLTFGRIYEDA 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P S+TGE+S E   HG   ++  +L+ L K    R+A PGE+++R+F
Sbjct: 62  EVVDEVLVSLFRAPHSYTGENSTEITCHGSNYILQKVLQLLIK-NGCRMAKPGEYTQRSF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       D+L H  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMNQMRGGFSKELAALRDQLLHFTSLIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+ E+++     E+      ++  IS  +    +G  I++G  + I+G +NAGKS+L N 
Sbjct: 181 SDHEELEFADRSELCQLAGSIEKVISRLVHSFSVGNAIKSGVPVAIIGETNAGKSTLLNV 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIV+DI GTTRDV+    ++ G   +  DTAGIRET D +E  GI+RTF +++ 
Sbjct: 241 LLNEEKAIVSDIHGTTRDVIEDTANIGGITFRFIDTAGIRETSDAIENLGIERTFQKLDQ 300

Query: 299 ADLILLL-------KEINSKKEISFP--KNIDFIFIGTKSDLY----STYTEEYDHLISS 345
           A+++L +        +I+   E   P  +    I +  K+DL     +T +      I S
Sbjct: 301 AEIVLWMIDATDASAQISQLSEQILPHCEGKQLILVLNKADLVEKSSNTISINLPENIKS 360

Query: 346 FTGEGLEEL-INKIKSILSNKFKKLPFS-----IPSHKRH---LYHLSQTVRYLEMASLN 396
                 E++ I+ ++ +L      LP       I ++ RH   L H  + +  ++    N
Sbjct: 361 IRISAKEKMNIDGLQQMLITA-ANLPIVTQNDIIVTNIRHYEALSHALEAIHRVQQGLAN 419

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +   D +++++R     L  I G V  + +L  IF  FCIGK
Sbjct: 420 --NLSGDFVSQDIRECIFHLNDIAGEVTNDMVLQNIFGHFCIGK 461


>gi|193216965|ref|YP_002000207.1| tRNA modification GTPase TrmE [Mycoplasma arthritidis 158L3-1]
 gi|193002288|gb|ACF07503.1| tRNA modification GTPase TrmE [Mycoplasma arthritidis 158L3-1]
          Length = 442

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 150/451 (33%), Positives = 234/451 (51%), Gaps = 28/451 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           + I A+S+G +  AISIIR+ GP   ++ + I   K    +  +  +    D   +D+ L
Sbjct: 4   DNITAISSGNINQAISIIRICGPDAIEILKKIYTGKIGTDKTITYGWIVDKDKTKIDEVL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +  F    ++ GED+ E + HGG+ V N IL  L      RLA  GEF+RRAF NG++ L
Sbjct: 64  VNFFIGKNNYIGEDTVEINAHGGVVVTNKILN-LILANGARLAERGEFTRRAFLNGRLSL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++  LI ++T  Q ++++     E++ L     ++L  I S +E ++D+S+  D++
Sbjct: 123 EKAEAINALIHAKTNKQAKIAITQFEPEINQLINSLENELLQIISLVEINIDYSDYNDIE 182

Query: 186 NFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               K  LN +L   +  I   + + +    I  G  I I+G  N GKSSL NAL +KD 
Sbjct: 183 QMD-KNKLNKLLDNFQKRIKVVVEKSENASDIYRGINIAIVGKPNTGKSSLLNALIQKDK 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL- 303
           AIVTDIPGTTRD++  + ++ G L +I DTAGIR+TD+ +E  GIK++   ++NA +I+ 
Sbjct: 242 AIVTDIPGTTRDLVEAEFEINGILFRIIDTAGIRKTDNEIESIGIKKSLEAIDNAKVIIH 301

Query: 304 ----LLKEINSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
               L K+    ++I    K+  +I +  K DL     E  D +  S     L EL    
Sbjct: 302 LHDPLQKDSTEDEQIKKLAKDKIYINVLNKRDLIKNLPE--DMVCISAKDNNLYEL---- 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC--------GLDIIAENLR 410
           ++ L  K+  +       K  LY+  Q +  L+    N  D         G +++  +L 
Sbjct: 356 RNALVKKYNDIDL---DDKEVLYNTRQ-LSLLKQVEYNINDALEGLGQGFGPEVVILDLT 411

Query: 411 LASVSLGKI-TGCVDVEQLLDIIFSKFCIGK 440
            A  +L  I     D E LLD IFSKFC+GK
Sbjct: 412 KAWENLRSILNKSHDNEALLDNIFSKFCLGK 442


>gi|301162191|emb|CBW21736.1| putative tRNA modification GTPase [Bacteroides fragilis 638R]
          Length = 465

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 155/475 (32%), Positives = 254/475 (53%), Gaps = 51/475 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFG--LDGR 59
           ++TI A++T A   AI  IR+SGP    +   I    K  K    +      FG   +G 
Sbjct: 3   QDTICAIAT-AQGGAIGSIRVSGPEAITITGRIFTPAKSGKLLSEQKPYTLTFGRIYNGE 61

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EMIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL++  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELTTLREKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +     ++ + ++    +G +I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRRLADEIEEVIARLANSFSVGNVIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET D +E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQKLD 298

Query: 298 NADLILLLKEINSKKEIS---------FPK--NIDFIFIGTKSDLYSTYTEEYDHLISSF 346
            A+++L +  I+S   IS          P+  +   I +  K +L +    + + L S F
Sbjct: 299 QAEIVLWM--IDSADAISQLTLLSDKILPRCEHKQLILVFNKVELINET--QKNELASQF 354

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHK----RHLYHLSQ------TVRYLE----- 391
           +    E + ++I+SI  +  ++L       +     HL  ++Q       VR+ E     
Sbjct: 355 S----EHIGSEIESIFISAKQRLHTDELQQRLVAAAHLPAVTQNDVIVTNVRHYEALTRA 410

Query: 392 MASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +++    GL      D +++++R     L  I G V  + +L  IF+ FCIGK
Sbjct: 411 LDAIHRVQEGLDANISGDFLSQDIRECIFHLSDIAGEVTNDMVLQNIFAHFCIGK 465


>gi|60680664|ref|YP_210808.1| tRNA modification GTPase TrmE [Bacteroides fragilis NCTC 9343]
 gi|81316267|sp|Q5LG80|MNME_BACFN RecName: Full=tRNA modification GTPase mnmE
 gi|60492098|emb|CAH06861.1| putative tRNA modification GTPase [Bacteroides fragilis NCTC 9343]
          Length = 465

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 155/475 (32%), Positives = 254/475 (53%), Gaps = 51/475 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFG--LDGR 59
           ++TI A++T A   AI  IR+SGP    +   I    K  K    +      FG   +G 
Sbjct: 3   QDTICAIAT-AQGGAIGSIRVSGPEAITITGRIFTPAKSGKLLSEQKPYTLTFGRIYNGE 61

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EMIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL++  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELTTLREKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +     ++ + ++    +G +I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRRLADEIEEVIARLANSFSVGNVIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET D +E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQKLD 298

Query: 298 NADLILLLKEINSKKEIS---------FPK--NIDFIFIGTKSDLYSTYTEEYDHLISSF 346
            A+++L +  I+S   IS          P+  +   I +  K +L +    + + L S F
Sbjct: 299 QAEIVLWM--IDSADAISQLTLLSDKILPRCEHKQLILVFNKVELINET--QKNELASQF 354

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHK----RHLYHLSQ------TVRYLE----- 391
           +    E + ++I+SI  +  ++L       +     HL  ++Q       VR+ E     
Sbjct: 355 S----EHIGSEIESIFISAKQRLHTDELQQRLVAAAHLPTVTQNDVIVTNVRHYEALTRA 410

Query: 392 MASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +++    GL      D +++++R     L  I G V  + +L  IF+ FCIGK
Sbjct: 411 LDAIHRVQEGLDANISGDFLSQDIRECIFHLSDIAGEVTNDMVLQNIFAHFCIGK 465


>gi|315185859|gb|EFU19624.1| tRNA modification GTPase TrmE [Spirochaeta thermophila DSM 6578]
          Length = 449

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 239/452 (52%), Gaps = 25/452 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGLD---GRI 60
           + I A++T    SAI++IR SG  C +  +  F  +K     R  SL +   +D   G +
Sbjct: 6   DRIVALATPWGRSAIAVIRASGAGCLEALDPLFRGRKTPSSMRGYSLAHGALVDPGTGEM 65

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ LL VF +P S+TGED+AE   HG  A V  I+  L +    R A PGEF+ RAF N
Sbjct: 66  LDEVLLAVFRAPHSYTGEDAAEISCHGSPAGVERIMRTL-RAHGFRAAEPGEFTLRAFLN 124

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE++ +++S+ T     L++  + G L +      +K+  + + +E  LD+ E
Sbjct: 125 GKLDLTEAEAVHEVVSARTANAHTLALHRLEGRLRARIDAIKEKIASVVAEVEVQLDYPE 184

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV++  S  ++ +     +++   ++  ++G + R G ++V+ G +NAGKSSLFN   
Sbjct: 185 E-DVEHPVSAHLIQEA---SHEVDGLLATYRVGRLYREGVRVVLAGRTNAGKSSLFNLFM 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++D AIV+++ GTTRD L   + L+G  V + DTAGIR+  D VE EGI+RT   + +AD
Sbjct: 241 REDRAIVSEVHGTTRDYLEGWISLKGVPVLLYDTAGIRDGGDPVEAEGIRRTREILSHAD 300

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE----------EYDHLISSFTGEG 350
            ++ L  ++  + +S  +      +G +  L   + +          E    +S  TGEG
Sbjct: 301 AVIYL--VDGTEGLSEGEEALIAELGAERPLIPVWNKVDASAVLPPPEGFIPLSCRTGEG 358

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAEN 408
              L   +  +           +   +R    L +    LE  + +L+ +   LD +A  
Sbjct: 359 FARLEETLHRVFPEAEGGGAEVVIDSERQRDALVRCRDSLEGGLDALS-RGAPLDALAVY 417

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L  A  +LG+ITG V  E +L+ IFS FC+GK
Sbjct: 418 LHDAMEALGEITGEVTREDILERIFSCFCVGK 449


>gi|313202911|ref|YP_004041568.1| tRNA modification GTPase trme [Paludibacter propionicigenes WB4]
 gi|312442227|gb|ADQ78583.1| tRNA modification GTPase trmE [Paludibacter propionicigenes WB4]
          Length = 462

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 160/472 (33%), Positives = 250/472 (52%), Gaps = 50/472 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKK-PFPRKASLRYFFG--LDGR-- 59
           TI A+ST      I++IR+SG   F+     FI +KK   F  + +    FG  ++G+  
Sbjct: 3   TITAISTAPGTGGIAVIRVSGKDAFKNFNPIFIPRKKNFVFLEQEANTVSFGNIVNGKNE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L+ VF +P SFTGED  E   HG + V   IL+ L    +  LA PGEF++RAF 
Sbjct: 63  IVDEVLVSVFRAPHSFTGEDVVEISCHGSVFVQQQILQLLINQ-HCVLAQPGEFTQRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI++ +    R+++  M G  SS   +   +L +  S +E +LDF+
Sbjct: 122 NGKMDLSQAEAVADLIAANSAASHRMALNQMRGGFSSELLKLRTQLLNFVSLVELELDFN 181

Query: 180 EEE----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           EE+    D     S     + L LK  +S   S   LG  ++NG  + ++G +N GKS+L
Sbjct: 182 EEDVEFADRTQLKSLATTIERLILK--LSDSFS---LGNALKNGIPVALVGETNVGKSTL 236

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  +D AIV+DI GTTRDV+   ++++G   +  DTAGIR+T D +E  GI+RT+ +
Sbjct: 237 LNVLLNEDKAIVSDIHGTTRDVIEDSINIDGITFRFIDTAGIRDTKDKIENMGIERTYQK 296

Query: 296 VENADLILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTEEYD---H 341
           +E A ++L + +     E            S  K +  +F    + +     +E D    
Sbjct: 297 IEQASIVLWILDCTQLSEHMEWLTDRIAKRSAGKKVILVF----NKIDKIADDERDVLSQ 352

Query: 342 LISSFTGEGL----EELIN--KIKSILSNKFKKLPFSIP-----SHKRHLYHLSQTVRYL 390
           L   F GE +     E IN  K++  L+ K  +LP   P     S+ RH   L+     +
Sbjct: 353 LFEQFEGERIYISARERINTDKLQKALT-KAAQLPDIHPGDVVVSNVRHYEALNHAHSAI 411

Query: 391 EMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               ++  D G+  D +++++R     LG+ITG +  +++L  IF KFCIGK
Sbjct: 412 -CRVIDGLDAGISGDFLSQDIRECMHFLGEITGQISNDEILGNIFGKFCIGK 462


>gi|332655106|ref|ZP_08420847.1| tRNA modification GTPase TrmE [Ruminococcaceae bacterium D16]
 gi|332515966|gb|EGJ45575.1| tRNA modification GTPase TrmE [Ruminococcaceae bacterium D16]
          Length = 457

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 151/464 (32%), Positives = 241/464 (51%), Gaps = 37/464 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGP-------SCFQVCEFICKKKKPFPRKASLRYFFGLD 57
           ++TI A++T A+PSAI I+RLSGP       +CF+       +  P  +   L Y   LD
Sbjct: 3   QDTIAAMATPAVPSAIGILRLSGPRAVETASACFRPAAGNRLEDHPAHK---LVYGSLLD 59

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G ++D+ L      P S+TGED+AE   HG   V+   LE L      R A PGEF++
Sbjct: 60  AQGEVIDQVLCTYSRGPGSYTGEDTAELQCHGSPMVLTLGLEALFAQ-GARQAGPGEFTQ 118

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ADL+ + +    R +   +SG LS   GQ    L  + +   A 
Sbjct: 119 RAFLNGRLDLAQAEAVADLLDARSREGARHAAGRLSGALSRRVGQIYSALVDVMAHFHAV 178

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LD+ +E D+  F+  ++ +D+      +   ++  + G  +  G +  ++G  NAGKSSL
Sbjct: 179 LDYPDE-DIDPFTLTKLEDDLSAQSRALHDLLATYQRGRRLNQGVRCALVGRPNAGKSSL 237

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL   D AIVTDIPGTTRD L  +++L G  +++ DTAG+R++ D +E+ G++R+   
Sbjct: 238 LNALVGYDRAIVTDIPGTTRDTLEAEVELGGVPLRLIDTAGLRDSSDPIERLGVERSRQA 297

Query: 296 VENADLILLLKE--INSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL--- 342
           +E A+LIL+L +  + + +E        +S       I I TK+DL S     + +L   
Sbjct: 298 MEEAELILVLWDSSVPATQEDGELLETALSLAPT---ILIHTKTDLPSAPV-PFLNLSPL 353

Query: 343 -----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
                +S+ TGEGL +L   +  +           + S+ R      + +  +E A    
Sbjct: 354 PPVVELSTKTGEGLADLEAAVAQLFPKGSDSAYGELLSNARQAQAAQRALEGVERARQAL 413

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E     D +  ++  A  +LG++TG    E +   IF +FC+GK
Sbjct: 414 EAGMTPDALLTDVEEALQALGELTGQSVGEDVTARIFQRFCVGK 457


>gi|257452996|ref|ZP_05618295.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_5R]
 gi|257466623|ref|ZP_05630934.1| tRNA modification GTPase TrmE [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917778|ref|ZP_07914018.1| thiophene and furan oxidation protein THDF [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317059536|ref|ZP_07924021.1| thiophene and furan oxidation protein THDF [Fusobacterium sp.
           3_1_5R]
 gi|313685212|gb|EFS22047.1| thiophene and furan oxidation protein THDF [Fusobacterium sp.
           3_1_5R]
 gi|313691653|gb|EFS28488.1| thiophene and furan oxidation protein THDF [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 457

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 157/462 (33%), Positives = 251/462 (54%), Gaps = 35/462 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR-I 60
           +TI A+ST      ISI+R+SGP    + E I   KK  P    R   + Y     G  I
Sbjct: 4   DTIAAISTPRGEGGISIVRISGPESLHILEKIFFPKKNIPVKELRNYGIHYGHIKKGEEI 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ +  +P ++T ED  E + HGG  +   ILE L      RLA  GEF+RRAF +
Sbjct: 64  IDEVLVSIMKAPNTYTREDIVEINCHGGYLITEKILE-LVLSSGARLAEMGEFTRRAFFH 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELS----SLYGQWIDKLTHIRSFIEADL 176
           G+IDL +AE++ D+I  +TE    LSM  + G+L     SL    +D   HI       L
Sbjct: 123 GRIDLTQAEAVMDIIHGKTETSLSLSMNQLRGDLKEKILSLKKAILDLAAHINVV----L 178

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ EE  + +   + +L ++  +  +I   IS  + G++I+ G K VI+G  N GKSSL 
Sbjct: 179 DYPEE-GIDDPIPENLLKNLRQVSVEIKELISSYQKGKMIKEGVKTVIIGKPNVGKSSLL 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N++ +++ AIVT + GTTRD++   ++++G  + + DTAGIR T D+VE  G+ ++   +
Sbjct: 238 NSILREERAIVTQVAGTTRDIIEEVINIKGIPLVLVDTAGIRNTTDLVENIGVMKSKEFL 297

Query: 297 ENADLILLL----KEINSKKE---ISFPKNIDFIFIGTKSDL-----YSTYTEEYDHL-I 343
           + ADL+L +    +E++ + E    S  +N   I I  K+DL      S+ ++  + + I
Sbjct: 298 QKADLVLFVLDASQELSKEDEEIYASLQENQKVIGILNKTDLEKKIQISSLSKIKNWIEI 357

Query: 344 SSFTGEGLEELINKI-KSILSNKF----KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           S+    G+EE+  KI + IL        KKL  +   HK  L   +Q +  +  A++ E+
Sbjct: 358 SAMKYIGIEEMEEKIYQYILQENVEESSKKLILTNIRHKSALEKTNQAIENI-FATV-EQ 415

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++A +++ A  SL +ITG +  E +LD IF  FC+GK
Sbjct: 416 GLPMDLMAVDIKEALDSLSEITGEISTEDVLDHIFHNFCVGK 457


>gi|94502356|ref|ZP_01308823.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|94451088|gb|EAT14046.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
          Length = 429

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 143/401 (35%), Positives = 222/401 (55%), Gaps = 26/401 (6%)

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +I+DK L+ +F  P+S+TGED  E   HG I + N +L  +      RLANPGEF+ RAF
Sbjct: 36  QIIDKVLIFLFKKPKSYTGEDIVEISCHGSIYIQNKLLSIIID-QGARLANPGEFTLRAF 94

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGKIDL +AES+ D+++SET    + ++  M G +S L  +   ++ ++ S IE +LDF
Sbjct: 95  LNGKIDLCQAESILDIVNSETFFSHKFAINQMRGNISLLIRKLSKEIINLLSLIEFELDF 154

Query: 179 SEEED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           SEE    +     K++L +I+     + + I   K+G  ++NG  + I+G  N GKS+LF
Sbjct: 155 SEENCNFINYLEFKKMLYNII---KKLKTLIRSFKIGNALKNGISVSIIGCPNVGKSTLF 211

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLE 295
           N L K + +IV++I GTTR+ +   L + G   +  DTAGI   T D +EK GIK+T+ +
Sbjct: 212 NKLLKYERSIVSNIAGTTRNYIEDSLIINGIKFRFIDTAGINNNTKDYIEKLGIKKTYSK 271

Query: 296 VENADLIL----------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---- 341
           +  +DLIL          +LK++ S +E  +PK      I  K DL     +E+++    
Sbjct: 272 INKSDLILYVFDDLNEKFILKKVKSLQE-KYPKKKI-FIIINKYDLIKKKIKEFNYKKIF 329

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKD 399
            IS+  G G+  L+++I +  S K   L  +  + +  RH     + + YL     N   
Sbjct: 330 KISAKYGYGVNNLLSEI-TFFSKKITSLKENTIVITQTRHYESFKKAIFYLYKVKKNLYS 388

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              + ++ ++R A   LGK+TG V  E +L  IFSKFCIGK
Sbjct: 389 ISPEFLSIDIRTALDYLGKVTGEVTNEDILSNIFSKFCIGK 429


>gi|319945013|ref|ZP_08019275.1| tRNA modification GTPase TrmE [Lautropia mirabilis ATCC 51599]
 gi|319741583|gb|EFV94008.1| tRNA modification GTPase TrmE [Lautropia mirabilis ATCC 51599]
          Length = 518

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 113/311 (36%), Positives = 173/311 (55%), Gaps = 8/311 (2%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPS----CFQVCEFICKKKKPFPRKASLRYFFGLDG 58
            +K  I A++T     AI ++R+S P          + +  +++   RKA+   F   D 
Sbjct: 2   QDKRPICAIATAPGQGAIGVVRVSAPEPDIITALAADILGPERRLVARKAAYGPFLAADA 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSR 115
           + +D GL + FP+P S+TGE   E   HGG  V   +L  + ++     +RLA PGEF+ 
Sbjct: 62  QPIDYGLALWFPAPHSYTGEHILELQGHGGPVVQQILLRRVLQVGAAFGIRLAEPGEFTE 121

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL++AE++ADLI + TE   R +   + G  S       ++L  +R  +EA 
Sbjct: 122 RAFLNDKLDLVQAEAVADLIEASTEQAARSATRSLQGVFSRQIDDLAEQLLTLRMLVEAT 181

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EEE +      +    +  + + +       + G  +R G  +V+ G  N GKSSL
Sbjct: 182 LDFPEEE-IDFLQKADAAGRLARIDDTLRRLFDTAQSGARLRQGLNVVLTGAPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  +VAIVT I GTTRD +   + +EG  + + DTAG+R+TDD VEK GI+RT+ E
Sbjct: 241 LNALAGAEVAIVTPIAGTTRDRVIEQISIEGVPINLIDTAGLRDTDDPVEKIGIQRTWAE 300

Query: 296 VENADLILLLK 306
           +E AD+++ L+
Sbjct: 301 IEKADVVVHLR 311



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 3/100 (3%)

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDC 400
           +S+ TG+G+E    K+  I   +  +    I + +RHL  LS+ + +L+ A   ++  D 
Sbjct: 420 LSARTGQGIEAFRRKLLDIAGFQPGQEGVFI-ARERHLQALSEALSHLQNARQHVSLGDQ 478

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD+ AE LRLA  +LG+ITG V  + LL +IFS+FCIGK
Sbjct: 479 ALDLFAEELRLAHQALGRITGAVTADDLLGVIFSRFCIGK 518


>gi|328947106|ref|YP_004364443.1| tRNA modification GTPase mnmE [Treponema succinifaciens DSM 2489]
 gi|328447430|gb|AEB13146.1| tRNA modification GTPase mnmE [Treponema succinifaciens DSM 2489]
          Length = 462

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 154/474 (32%), Positives = 247/474 (52%), Gaps = 56/474 (11%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGRI-- 60
           +E I A++T  +PSAI I+R SG +C ++   I  +KK   + A  SL Y +  D RI  
Sbjct: 7   EEPIAAIATALVPSAIGIVRTSGKNCIELVSKIFSRKKALLQAAGNSLVYGWIEDSRIQN 66

Query: 61  ----LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
               +D+ +L V+ +P+SFTGED  E   HGG+ VV  I   L +    R A  GEF+ R
Sbjct: 67  GNKKIDEVMLGVYKAPKSFTGEDMVEIFCHGGVNVVTSIFSLLLE-NGFRKAERGEFTFR 125

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL----SSLYGQWIDKLTHIRSFI 172
           A+ NGK+DL +AE++ ++I S T   R  +   +SG L    SS+    +D + +I    
Sbjct: 126 AYINGKVDLTKAEAVKEIIDSRTNASRSRAAGRLSGNLFEQISSIKKLILDTIGNI---- 181

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E ++++ E+E  +N S     + +   +  +S   S  K  ++ ++G ++V+ G +NAGK
Sbjct: 182 EVEIEYPEDE--ENISESFDTSLLKAAQKKLSDLASSWKAEKLYQDGARVVLCGKTNAGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSLFN+L K++ AIV+ I GTTRD L    D  G  V++ DTAG+R+T D++E+ G++  
Sbjct: 240 SSLFNSLLKEERAIVSSIEGTTRDWLECWTDFAGIPVRLFDTAGLRKTSDLIEERGVELA 299

Query: 293 FLEVENADLILLLKEINS---KKEISF---PKNIDFIFIGTKSDLYSTYTEEYDHL---- 342
               ++AD+IL + + +    K ++ F    KNI  + +  K D +    +    +    
Sbjct: 300 KDLSQDADVILYIVDSSKGILKDDLDFIESQKNIPVVLVLNKCDSFDLNLDGIKKVWKDS 359

Query: 343 --ISSFTGEGLEELINKIKSIL--------------SNKFKKLPFSIPSHKRHLYHLSQT 386
             IS+    G+E L+ K+K IL              S + KK          H   +SQ 
Sbjct: 360 VKISAKNNIGIELLVFKVKDILFDGEKTEREQSGLGSARQKKSVQEALERVTHALEISQD 419

Query: 387 VRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             Y           GLD + ++L  A   LG++ G V  + +L+ IFS+FC+GK
Sbjct: 420 FSY-----------GLDAVVQDLEDALECLGEVAGEVSPDDVLENIFSRFCVGK 462


>gi|22002507|gb|AAM82659.1| TrmE [Synechococcus elongatus PCC 7942]
          Length = 482

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 146/462 (31%), Positives = 240/462 (51%), Gaps = 33/462 (7%)

Query: 6   ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56
           +TI A++T  +P   ++ I+RLSG +  ++    F    ++P+    S R  +G      
Sbjct: 27  DTIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQIAGQQPWE---SHRILYGYIRDPE 83

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            GR++D+ LL+   +P S+T ED  E H HGG+  V   L+ L      RLA PGEF+ R
Sbjct: 84  SGRLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQ-LCIRAGARLAEPGEFTLR 142

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AES+ADLIS+++    + ++  + G+L     Q  D+   I + +EA +
Sbjct: 143 AFLNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAEVEARI 202

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF  E+D+     + +   +       +S     +    +  G KI I+G  N GKSSL 
Sbjct: 203 DF--EDDLPPLDLEAIAAQLTAAGAGHASDFINCRSRGTVAYGPKIAIVGRPNVGKSSLL 260

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NA ++ D AIVTD+PGTTRD++   L + G  V++ DTAGIRET D VE+ G++R+    
Sbjct: 261 NAWSRCDRAIVTDLPGTTRDLVESQLIVGGIPVQVLDTAGIRETSDQVEQIGVERSRRAA 320

Query: 297 ENADLILLLKEIN---SKKEISFPKNID---FIFIGTKSDLYSTY--------TEEYDHL 342
           ++ADL+LL  + +   S ++ +  + +     + +  K D  S           +E+  +
Sbjct: 321 QSADLVLLTIDASAGWSAEDQTIWEAVSDRPILLVINKRDRLSEAERHAIALPQQEFKAI 380

Query: 343 ISSFTG--EGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
           + +     +G+E+L   I  ++ +       +    ++R +  L+     L       + 
Sbjct: 381 VWTAAAQQQGIEDLEAAILAAVGTGDLTSANWDWALNQRQVAALTTAQTALRRVEETLQA 440

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LD    +LR A  +LG ITG    E +LD+IFS+FCIGK
Sbjct: 441 QLPLDFWTIDLREAIAALGSITGEEIAESMLDLIFSRFCIGK 482


>gi|254558111|ref|YP_003064528.1| tRNA modification GTPase TrmE [Lactobacillus plantarum JDM1]
 gi|254047038|gb|ACT63831.1| tRNA modification GTPase TrmE [Lactobacillus plantarum JDM1]
          Length = 463

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 148/479 (30%), Positives = 242/479 (50%), Gaps = 63/479 (13%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDG--- 58
           E +TI A+ST      ISIIR+SG   F V   I K K    R  S    +G  +D    
Sbjct: 6   EFDTIAAISTPPGEGGISIIRISGDQTFNVVTQIFKGKD-LSRVQSHTINYGHIVDPDTH 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ +  V  +P+++T ED  E + HGG+   N IL+ L      R+A PGEF++RAF
Sbjct: 65  QEVDEVMATVMRAPKTYTREDVVEINCHGGLVATNEILQ-LILSHGARMAEPGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ DLI ++T+   ++++  + G+LS L       +  + + +E ++D+
Sbjct: 124 LNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSKLIRHLRQDILDVLAQVEVNIDY 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E + V+  ++K +      +   I+  ++  K G+++R G    I+G  N GKSSL N 
Sbjct: 184 PEYDAVETMTTKMLKEKATEVAQSINQLLATAKQGKVLREGLATAIIGRPNVGKSSLLNH 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVTD+ GTTRDV+   +++ G  +K+ DTAGIR+T+D VEK G++R+   +  
Sbjct: 244 LLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRDTEDKVEKIGVERSRKAIGA 303

Query: 299 ADLIL---------------LLKEINSKKEI------SFPKNIDFIFIGTKSDL------ 331
           ADL+L               LL+E +  K I        P  +D   +    DL      
Sbjct: 304 ADLVLLVLDNSQPLTAEDRELLQETDQSKRIVILNKTDLPARLDQAELAQLVDLSDVLSM 363

Query: 332 ----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
                S  T+    +   F  EG+E   N +              + ++ RH+  L+Q  
Sbjct: 364 SVLEQSGVTQLEQRIAKMFFNEGIESSQNNV--------------MVTNARHIGLLNQAK 409

Query: 388 RYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +     +L +   GL      D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 410 Q-----ALQDVQTGLVAGMPVDLVQIDMTRCWEFLGQITGDSYEDELLDQLFSQFCLGK 463


>gi|237752888|ref|ZP_04583368.1| tRNA modification GTPase TrmE [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375155|gb|EEO25246.1| tRNA modification GTPase TrmE [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 462

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 161/481 (33%), Positives = 246/481 (51%), Gaps = 69/481 (14%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC------EFICKKKKPFPRKASLRYFFGLDGR 59
           +TI A +T    S+++++RLSG +   +       +F   K    PR A L   +  DG 
Sbjct: 5   DTIIAPATTYGQSSLNVLRLSGANALFIASKLARLDFNAIKSLIKPRLARLTKIYFEDGT 64

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ +L+ F +P S+T ED  EF  HGG  +   IL+   K    RLANPGEF++RAF 
Sbjct: 65  LLDECILLYFKAPNSYTTEDVIEFQCHGGSFIAQNILQTCLKF-GARLANPGEFTKRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS----SLYGQWIDKLTHIRSFIEAD 175
            G+IDL +A+++A LI S+     ++ M  + GE+     +L    I  L H   FI   
Sbjct: 124 GGRIDLSQAQAVAKLIESQNVNAHQMLMRHLKGEMQEFCENLRATLISFLAHSEVFI--- 180

Query: 176 LDFSEEEDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
            D+++EE  Q+   + K+ L  +L    ++ + + Q +   ++ +GYK+ I+G  N GKS
Sbjct: 181 -DYADEELPQDLLENLKQKLQVVL---KNLKALLEQSQNKRVLFDGYKLCIIGKPNVGKS 236

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NAL + D AIV+DI GTTRD +  +  L GYL+++ DTAGIRE+ D VE EGIKR+ 
Sbjct: 237 SLLNALLRNDRAIVSDIAGTTRDSIEENFVLGGYLLRLIDTAGIRESTDAVENEGIKRSL 296

Query: 294 LEVENADLILLL------------KEINSKKEISFPKNIDFIFIGT--KSDLYSTYTEEY 339
            + + +DL+L+L            + I   K     K I  +   T  K  L S   +E+
Sbjct: 297 EKAKESDLLLVLFDGSLPLSAEDFQIIELLKAYKLQKKILVLINKTDLKMQLESKVLDEF 356

Query: 340 --------------DHLISSFTGEGLEELIN---KIKSIL---SNKFKKLPFSIPSHKRH 379
                         D L+  F    LEEL+N   K++S+L     +F+ +   I + K  
Sbjct: 357 NPLLLSLKGDLLNEDSLLERFKLR-LEELLNENEKMESLLLVSEYQFQAVQECINALKNS 415

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439
           L  L      LE+ S +        I E LR    ++  IT   +  Q+LD++F  FC+G
Sbjct: 416 LNPLENG--ELELFSFH--------INEALR----AISTITKPYEYSQMLDVMFGDFCLG 461

Query: 440 K 440
           K
Sbjct: 462 K 462


>gi|58338215|ref|YP_194800.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus NCFM]
 gi|227902598|ref|ZP_04020403.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus ATCC 4796]
 gi|75357100|sp|Q5FHQ5|MNME_LACAC RecName: Full=tRNA modification GTPase mnmE
 gi|58255532|gb|AAV43769.1| thiophene and furan oxidation protein [Lactobacillus acidophilus
           NCFM]
 gi|227869687|gb|EEJ77108.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus ATCC 4796]
          Length = 461

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 155/471 (32%), Positives = 253/471 (53%), Gaps = 50/471 (10%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST      ISI+R+SG    ++   + K       P   ++ Y   +D   G
Sbjct: 7   EFDTIAAISTPIGEGGISIVRMSGEDAIKIANEVFKGADLAQVPTH-TIHYGHIIDPDTG 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L K    R+A+PGEF++RAF
Sbjct: 66  KTIDESMVTVLRAPKTFTCEDIVEINCHGGIVVTNHILQLLLKH-GARMADPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174
            NG+IDL +AES+ D++ ++T+  R++++  + G    ++ ++  + +D L ++    E 
Sbjct: 125 VNGRIDLTQAESVMDIVRAKTDKARQVAVSQLEGGLLHKIRTMRQEILDTLANV----EV 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E  D    ++ ++ +    +   I   +   + G+I+RNG    I+G  N GKSS
Sbjct: 181 NIDYPEY-DADTVTANQMADTAKSVIEKIDRLLKTAQEGKILRNGLATAIVGQPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  TDD VEK G++R+  
Sbjct: 240 LLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVERSKK 299

Query: 295 EVENADLILLLKEINSKKEI-----SFPKNIDF---IFIGTKSDLYSTYTEEYDHLISSF 346
            +E ADL+LLL  I++ KE+     S     D    I I  KSDL    T E    +   
Sbjct: 300 ALERADLVLLL--IDASKELTAEDKSLINETDSKKRIIILNKSDLGQKITVEQ---MKKL 354

Query: 347 TG--------------EGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
           TG              + LEELINK+  + + N   ++   + +++R    L +    LE
Sbjct: 355 TGSEVISTSILKEDNMDELEELINKLFFAGIENSNDQV---MVTNQRQTSLLHKAKSELE 411

Query: 392 MASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +   D G+  DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 412 DV-IQAVDDGIPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|116630435|ref|YP_819588.1| tRNA modification GTPase TrmE [Lactobacillus gasseri ATCC 33323]
 gi|238853335|ref|ZP_04643715.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 202-4]
 gi|282850777|ref|ZP_06260152.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 224-1]
 gi|311111579|ref|ZP_07712976.1| tRNA modification GTPase TrmE [Lactobacillus gasseri MV-22]
 gi|122272628|sp|Q040F3|MNME_LACGA RecName: Full=tRNA modification GTPase mnmE
 gi|116096017|gb|ABJ61169.1| tRNA modification GTPase trmE [Lactobacillus gasseri ATCC 33323]
 gi|238834023|gb|EEQ26280.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 202-4]
 gi|282558185|gb|EFB63772.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 224-1]
 gi|311066733|gb|EFQ47073.1| tRNA modification GTPase TrmE [Lactobacillus gasseri MV-22]
          Length = 461

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 152/465 (32%), Positives = 253/465 (54%), Gaps = 42/465 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-- 59
           +TI A+ST      ISI+RLSG     +   + K     K P     ++ Y   +D +  
Sbjct: 9   DTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGADLTKVP---THTIHYGHIVDPKTK 65

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ ++ V  +P++FT ED  E + HGG+ V N IL+ L      R+A+PGEF++RAF
Sbjct: 66  EVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174
            NG+IDL +AES+ D++ ++T+  R+++M  ++G    ++ ++  + +D + H     E 
Sbjct: 125 MNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIKTMRQELLDTMAHE----EV 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E  D+ + +S+E+      +   I   +   + G+IIRNG    I+G  N GKSS
Sbjct: 181 NIDYPEY-DMDDLTSQEMKKKAQEVSKQIEQLLQTAQEGKIIRNGLATAIVGRPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L + D AIVTDI GTTRD L   + ++G  +K+ DTAGI  T+D VEK G++R+  
Sbjct: 240 LLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVERSKK 299

Query: 295 EVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
            ++ ADL+LLL + +       K+ +    N   I I  K DL +  ++E   +I   T 
Sbjct: 300 AIKEADLVLLLLDASQDLTAEDKRLLDLTANKKRIIILNKQDLGTKISQE---MIKDITD 356

Query: 349 EGL---EELINKIKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLE-MASL 395
             +     L  K    L N  +KL FS         + +++R    L++  + LE + S 
Sbjct: 357 NPIIVTSILKQKNMDALENAIEKLFFSGIENSQNQILVTNQRQAGLLTKAKQSLEDVISG 416

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    LD++  +L+ A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 417 IDDAMPLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|310825624|ref|YP_003957982.1| tRNA modification GTPase mnme [Stigmatella aurantiaca DW4/3-1]
 gi|309398696|gb|ADO76155.1| tRNA modification GTPase MnmE [Stigmatella aurantiaca DW4/3-1]
          Length = 427

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 140/431 (32%), Positives = 225/431 (52%), Gaps = 14/431 (3%)

Query: 20  ISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
           + I+RLSGP+  +V   +     + P PR A L  F    G  LD+GL + F +P SFTG
Sbjct: 1   MGILRLSGPAALEVGRRLAPGIPEAPVPRHAYLASFVDAQGLTLDEGLFLYFRAPHSFTG 60

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HG   ++  +L  + +   +R A PGEF+RRAF  G+IDL  AE++ADL+++
Sbjct: 61  EDVVELQAHGSPRLLQLLLARVLEDERVRPARPGEFTRRAFLQGRIDLTRAEAVADLVAA 120

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           ++E   R +  G++G LS       + L  + + +E  L+F +E +  +  +      + 
Sbjct: 121 DSEAAVRAAAAGLAGALSHRVRALEEPLRALHADLEGVLNFPDEAEGADEGAG---PRVA 177

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L+++  + +S+   G ++R G ++ + G  NAGKS+LFN L  +  A+V   PGTTRDV
Sbjct: 178 ALRSEAEALLSEAGRGRLVRRGARVALYGPVNAGKSTLFNRLVGEARALVDAEPGTTRDV 237

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKE- 313
           L   ++  G  + + DTAG+RET   +E  GI RT   + + DL LL+   + + ++ E 
Sbjct: 238 LEARVEWNGLALSLLDTAGLRETPGRLEALGIARTRQTLASVDLALLVLPPEALPAEAEG 297

Query: 314 -ISFPKNIDFIFIGTKSDLYSTYTE---EYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                     + +  K D+  +      E    +S  TGEGLE L   I S L  +    
Sbjct: 298 WAHEAGATAVLRVAGKCDVAPSLPSPAWERGLRVSGRTGEGLEPLRAAILSHLWGEGTPA 357

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLL 429
             ++ S +RH   L +    L  A    +   L++++  + LA  +LG+++G    E LL
Sbjct: 358 AVALVS-ERHADALRRAAEALGRAHEASRLSTLEVLSGEVGLALEALGEVSGTSASEALL 416

Query: 430 DIIFSKFCIGK 440
           D IF +FCIGK
Sbjct: 417 DAIFQRFCIGK 427


>gi|331089219|ref|ZP_08338121.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330405771|gb|EGG85300.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 465

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 247/478 (51%), Gaps = 57/478 (11%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGRI-- 60
           KETI A+STG   S I I+R+SG     V + I + KK     +  ++ Y + +D  I  
Sbjct: 3   KETIAAISTGMTNSGIGIVRISGEEAVLVADRIYRGKKKLCEVKSHTINYGYIVDREISS 62

Query: 61  --------LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
                   +D+ L+ V  +P +FTGED+ E + HGG  VV  +LE + K      A PGE
Sbjct: 63  AEKKSEEVIDEVLVTVMKAPGTFTGEDTVEINCHGGTFVVKKVLELVLK-NGASPAEPGE 121

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NGK+DL +AE++ D+I+SE E   + S+  + G +        +K+ +  +FI
Sbjct: 122 FTKRAFLNGKMDLSQAEAVIDVINSENEYALQSSVSQLKGSVKKKINDIREKIIYHTAFI 181

Query: 173 EADLDFSEEEDVQNFS------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
           E  LD  E   V  +S      ++E++ ++  L       I     G +I+ G K VI+G
Sbjct: 182 ETALDDPEHISVDGYSDTLRSSAEEIIQELERL-------IHSADDGRVIKEGIKTVIVG 234

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             NAGKSSL N LA  + AIVTDI GTTRDVL   + L    + + DTAGIR+T+D++EK
Sbjct: 235 KPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGVLNLNVVDTAGIRQTEDLIEK 294

Query: 287 EGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
            G+ +     E ADLI+ + +       N +K I+   +   I +  KSD+ +  + E  
Sbjct: 295 IGVDKALEYAETADLIIYVVDASRSLDENDEKIINMISDKKSIVLLNKSDIDTVISAE-- 352

Query: 341 HL-----------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           H+           IS+    G+++L +K+K +    F K   S  + + ++ ++ Q    
Sbjct: 353 HIKEKVSNIPIISISAKEERGIKDLEDKVKEM----FLKGDISF-NDQVYISNVRQKNAL 407

Query: 390 LEMASLNEK-------DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LE     +K       +   D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 408 LEALESMKKVIRSIDDNMPEDFYSIDLMDAYESLGYITGNSVGEDLINEIFSKFCMGK 465


>gi|53712463|ref|YP_098455.1| tRNA modification GTPase TrmE [Bacteroides fragilis YCH46]
 gi|81825067|sp|Q64X55|MNME_BACFR RecName: Full=tRNA modification GTPase mnmE
 gi|52215328|dbj|BAD47921.1| putative ThdF family GTPase [Bacteroides fragilis YCH46]
          Length = 465

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 154/475 (32%), Positives = 254/475 (53%), Gaps = 51/475 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFG--LDGR 59
           ++TI A++T A   AI  IR+SGP    +   I    K  K    +      FG   +G 
Sbjct: 3   QDTICAIAT-AQGGAIGSIRVSGPEAITITGRIFTPAKSGKLLSEQKPYTLTFGRIYNGE 61

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EMIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL++  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELTTLREKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE DV+ F+ +  L  +     ++ + ++    +G +I+NG  + I+G +NAGKS+L N
Sbjct: 181 SEE-DVE-FADRSALRRLADEIEEVIARLANSFSVGNVIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET D +E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQKLD 298

Query: 298 NADLILLLKEINSKKEIS---------FPK--NIDFIFIGTKSDLYSTYTEEYDHLISSF 346
            A+++L +  I+S   IS          P+  +   I +  K +L +    + + L S F
Sbjct: 299 QAEIVLWM--IDSADAISQLTLLSDKILPRCEHKQLILVFNKVELINET--QKNELASQF 354

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHK----RHLYHLSQ------TVRYLE----- 391
           +    E + ++I+SI  +  ++L       +     HL  ++Q       +R+ E     
Sbjct: 355 S----EHIGSEIESIFISAKQRLHTDELQQRLVAAAHLPTVTQNDVIVTNIRHYEALTRA 410

Query: 392 MASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +++    GL      D +++++R     L  I G V  + +L  IF+ FCIGK
Sbjct: 411 LDAIHRVQEGLDANISGDFLSQDIRECIFHLSDIAGEVTNDMVLQNIFAHFCIGK 465


>gi|317502978|ref|ZP_07961067.1| thiophene and furan oxidation protein ThdF [Prevotella salivae DSM
           15606]
 gi|315665914|gb|EFV05492.1| thiophene and furan oxidation protein ThdF [Prevotella salivae DSM
           15606]
          Length = 454

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 148/459 (32%), Positives = 245/459 (53%), Gaps = 28/459 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQV--CEFICKKKKPF--PRKASLRY--FFGLD 57
           +  TI A++T A   AI I+R+SG    ++  C F   + K     +  SL Y      +
Sbjct: 2   DNHTICALAT-ATGGAIGIVRVSGEKAIEITDCIFKSTRLKTLCDAKGNSLHYGEVHDKE 60

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ++D+ L+ +F SP S+TGEDS E   HG   ++  +++ L      R A PGEF++RA
Sbjct: 61  GNVIDEVLVSIFRSPHSYTGEDSTEISCHGSAFILGQVIKALID-SGCRQAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           + NGK+DL +AE++ADLI+S  +   +L++  + G  SS   Q  ++L  I S +E +LD
Sbjct: 120 YLNGKMDLSQAEAVADLIASSNKASHQLALNQLKGHFSSELSQLREQLLKITSLLELELD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FS+ E+++     E+      +++ IS  I   + G  ++ G  + I+G +N GKS+L N
Sbjct: 180 FSDHEELEFADRGELEALAEKIQHRISDLILSFETGNALKKGIPVAIVGKTNVGKSTLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV++I GTTRD++    ++ G   +  DTAGIR+T+D VE+ GI++ F +++
Sbjct: 240 CLLHEDKAIVSNIHGTTRDIIEDTTEINGITFRFIDTAGIRKTEDYVEQLGIEKAFKKID 299

Query: 298 NADLILLL-------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344
            A ++L          +IN  + ++  K +  +F   K D  S    + +HL      IS
Sbjct: 300 EASIVLWTIDQIPTADDINEMQRLTEGKKLLIVF--NKMDCLSQQQVD-NHLPFRVIYIS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-- 402
           +   E + EL   I         +    I ++ RH   L++    ++   ++    GL  
Sbjct: 357 AKYKEHINELETAIYESADIPTIRENSVIVTNARHYEALARAKESIQRV-IDGIQLGLSG 415

Query: 403 DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
           D+I+E+LRL    LG+ITG  +   ++L  IF  FCIGK
Sbjct: 416 DLISEDLRLCLEQLGEITGGQITTNEVLGNIFKHFCIGK 454


>gi|197294186|ref|YP_001798727.1| tRNA modification GTPase TrmE [Candidatus Phytoplasma australiense]
 gi|171853513|emb|CAM11355.1| tRNA modification GTPase [Candidatus Phytoplasma australiense]
          Length = 453

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 150/456 (32%), Positives = 234/456 (51%), Gaps = 27/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLDGRILD 62
           +TI A++T      IS+IR+SG         I K K   +         +    D  ILD
Sbjct: 4   DTIAAITTPLGTGGISVIRVSGAQAITEINKIFKGKNLLEALTHTVHHGFILNQDETILD 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+ VF +P SFTGE+  E   HGGI +   +LE +  + +LRLA PGEFS+RA+ NGK
Sbjct: 64  EVLVSVFKAPNSFTGENVVEISAHGGILITQMVLERILTL-DLRLAYPGEFSQRAYMNGK 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AE++ DLI +  +   +++  G+    S L     +K+  + + IE ++D+ E +
Sbjct: 123 IDLVQAEAIMDLIHATNQNAIKIANLGLHKHTSQLVSSLREKILTLIAQIEVNIDYPEYD 182

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D    +   +   +  L  ++ + +   +    +R+G K +I+G  N GKSSL NAL  +
Sbjct: 183 DTLLMTQSIIAPQVKSLIEELEAILFHSQKSRYLRDGIKTLIIGRPNVGKSSLLNALLNE 242

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             AIV+DI GTTRD +    + +G  + + DTAGI +T + +EK GI RT   + +A+LI
Sbjct: 243 PKAIVSDIAGTTRDFVDASFNCQGITLNLIDTAGIHQTTNPIEKIGISRTKKILSSAELI 302

Query: 303 LL-------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-----ISSFTGEG 350
           LL       LKE + +K +   +    I IG K+DL +  T     +     ISS    G
Sbjct: 303 LLVLDQSEPLKE-DDEKLLELTRLKPRIIIGNKADLSNEKTVTSFPIKNFISISSLKKTG 361

Query: 351 LEELINKI------KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           L+EL   I      + I S  F    FS   H   +    Q ++  + A ++     +D+
Sbjct: 362 LDELQKAILQKFQLEQISSKDFNS--FSNVRHINQIQIAHQALKDFQTAFMDS--MPIDV 417

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +L  A  +LGKI G      L+  +FSKFC+GK
Sbjct: 418 YSIDLTKAYQALGKIIGDNQENDLIKELFSKFCLGK 453


>gi|118474837|ref|YP_891745.1| tRNA modification GTPase TrmE [Campylobacter fetus subsp. fetus
           82-40]
 gi|205829129|sp|A0RNG2|MNME_CAMFF RecName: Full=tRNA modification GTPase mnmE
 gi|118414063|gb|ABK82483.1| tRNA modification GTPase TrmE [Campylobacter fetus subsp. fetus
           82-40]
          Length = 438

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 148/450 (32%), Positives = 243/450 (54%), Gaps = 29/450 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKGL 65
            I A+++     +ISI+RLSG   + +   +CKK  P  PR A LR  +  +   LD+ +
Sbjct: 2   NIVALASAYGVGSISIVRLSGDGAYDLAINLCKK--PLTPRYAHLRKLYCENMVFLDEAI 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I + +P SFTGED  EF  HGG+ V N I++EL ++   R+ANPGEFS+RAF NGK+DL
Sbjct: 60  VIYYKAPFSFTGEDVVEFQTHGGVVVANLIIDELLRL-GARVANPGEFSKRAFLNGKMDL 118

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182
           ++AES+  LI++ +E   ++    M+GELS       D+L  I ++ E  +D+++++   
Sbjct: 119 VKAESIQSLINARSEGAAKILARTMNGELSVFVNSLRDELIKILAYTETCIDYADDDLPS 178

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+ + S   +LN    L++ I  +IS  K G I  +GYK+ I+G  N GKSS+ N+L   
Sbjct: 179 DILHSSKDLLLNSYKKLEHII--NISNSKKGLI--DGYKVAIIGRPNVGKSSILNSLLHY 234

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADL 301
           + AI ++  GTTRD +   +    +LV+I DTAGIR E D  +E  GI+ +      AD+
Sbjct: 235 ERAITSETAGTTRDTIEEQIKFGSHLVRIIDTAGIRDEFDSSIEAAGIEYSKRAAREADI 294

Query: 302 ILLLKEINSKKEISFPKNIDF--------IFIGTKSDLYSTYTEEYDHLISSFTGEGL-- 351
           I  + + + K  +   + ++F        I++  KSDL   +    + ++ S   +    
Sbjct: 295 IFCVFDSSQKASLEDRQILEFISNLNKKTIYVLNKSDLEFKFDISLNAVLVSAKLDSTPL 354

Query: 352 -EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
            +EL + + S  +N        + S  R +         ++ A     +  L++ A  L 
Sbjct: 355 SKELESYLNSQDTNDI------MLSSNRQIEASRLASEAIKNALELLNESELELFAYELN 408

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A   +G IT  ++  +LLD +FS FC+GK
Sbjct: 409 IALKHIGSITKPMENSELLDKMFSSFCLGK 438


>gi|13507747|ref|NP_109696.1| tRNA modification GTPase TrmE [Mycoplasma pneumoniae M129]
 gi|2495119|sp|P75104|MNME_MYCPN RecName: Full=tRNA modification GTPase mnmE
 gi|1673806|gb|AAB95794.1| thiophene and furan oxidation protein [Mycoplasma pneumoniae M129]
          Length = 442

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 140/454 (30%), Positives = 247/454 (54%), Gaps = 33/454 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGRILDK 63
           K+T+FA++T    SAI IIRLSGP  +++   I  K+ KP   +    +    + + +D 
Sbjct: 4   KQTMFALATAPFNSAIHIIRLSGPDVYRIINQITNKEVKPLGMRIQRVWLIDHNQKKVDD 63

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            LL  F +P S+TGED  E   HG + +VN I+  L K   ++ A PGEF++R + NGK+
Sbjct: 64  VLLFKFVAPNSYTGEDLIEISCHGSMVIVNEIIGLLLKHGAVQ-AQPGEFTQRGYLNGKM 122

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
            L +A S+ +L+ S     + +++  ++G++ +     ++KL  +   +E +LD+ E  D
Sbjct: 123 SLNQAASVNNLVLSPNTTLKDVALNALAGQVDARLEPLVEKLGQLVMQMEVNLDYPEYTD 182

Query: 184 VQN--FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            Q    +  + +  I  + N I   + Q +L  + ++ +KI I+G++N GKSSL NAL  
Sbjct: 183 EQRELVTMNQAVVQITQILNQIV--VGQDQLQRL-KDPFKIAIIGNTNVGKSSLLNALLD 239

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIV+ I G+TRD++  D  L G+ VKI DTAGIR+    +EK GI++TF  ++ A+L
Sbjct: 240 QDKAIVSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQHQSALEKAGIQKTFGAIKTANL 299

Query: 302 ILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           ++ L  +++++    PK I        DF  +  K+DL     ++   +  S   + ++ 
Sbjct: 300 VIYL--LDARQPEPDPKIIARLKKLKKDFFLVHNKADL----VQQSFQVSISAKQKQIQP 353

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY------LEMASLNEKDC-GLDIIA 406
           L++ +   L ++F    +S+  ++ +L    QT+        LE   + +++C   DI+ 
Sbjct: 354 LVDLLTQYL-HQF----YSVEQNQLYLISDWQTILLQKAIAELEHFLIKQQNCLFFDILV 408

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LR A   + ++ G      L++ IF  FC+GK
Sbjct: 409 VHLRAAHEYILQVLGKNTNYDLINEIFKHFCLGK 442


>gi|194337753|ref|YP_002019547.1| tRNA modification GTPase TrmE [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194310230|gb|ACF44930.1| tRNA modification GTPase TrmE [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 473

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 155/471 (32%), Positives = 248/471 (52%), Gaps = 35/471 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFGL 56
           +  ++  + A++T     A++++R+SG   F + + + +KK      F      R  FG 
Sbjct: 7   LPRQEAPVAAIATPVGVGALAVLRISGEGVFDIAQKVFRKKNNPNFRFTASKGFRAHFGT 66

Query: 57  ----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
               +G ++D+ + +VF SP SFT ED  EF  HGG  VV  IL+ L      RLA PGE
Sbjct: 67  VHDSEG-LIDEVVALVFRSPNSFTMEDMVEFTCHGGPVVVQHILKVLLD-EGCRLAEPGE 124

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF NG+IDLL+AE++ ++I + TE   R ++  M G LS       + L    + +
Sbjct: 125 FTRRAFLNGRIDLLQAEAIGEMIHARTESAFRTAVTQMQGTLSLRLDAMRELLLRSCALL 184

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E +LDFSEE DV+  S  ++  ++  L+ ++   +   + G +++ G   VI G  NAGK
Sbjct: 185 ELELDFSEE-DVEFQSRTQLQEELAGLQEELHRLVDSYQHGRLLKEGVATVIAGLPNAGK 243

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           S+L N L  ++ +IV+ +PGTTRD +      E  + +++DTAG+RE  + VE EGI+R+
Sbjct: 244 STLLNVLLGEERSIVSHMPGTTRDYIEECFLYEKTMFRLTDTAGLREGGEEVEHEGIRRS 303

Query: 293 FLEVENADLILLLKEINSKK---EISFPK-------NIDFIFIGTKSDLYSTYTEEYDHL 342
           F ++  ADL++ L +I+ +    E+   +       N   I    K DL +   E    L
Sbjct: 304 FKKISEADLLVYLLDISLESYLDEVPLIRDLLERNSNARMIVAANKIDLATGSEERLQKL 363

Query: 343 ----------ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYL 390
                     +S+  GEGLE L  ++ S +     KL  +  + +  RH   L      L
Sbjct: 364 RAATGCEVCALSAAKGEGLEAL-KRLMSTMVEGLDKLHEASVLVTSLRHYEALRNASDAL 422

Query: 391 EMAS-LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             A  L  +    ++IA  LR A   +G+ITG V  E+++++IF +FCIGK
Sbjct: 423 ANAQELITRQAETELIAFELRSALDYVGEITGKVVSEEIVNLIFEQFCIGK 473


>gi|262341101|ref|YP_003283956.1| tRNA modification GTPase TrmE [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272438|gb|ACY40346.1| tRNA modification GTPase TrmE [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 464

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 156/468 (33%), Positives = 254/468 (54%), Gaps = 41/468 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-------LRYFFGLDG 58
           +TI A++T    SAIS+IRLSG +     E I    KP  +  +       L Y    + 
Sbjct: 5   DTIVALATPIGSSAISVIRLSGKTSISTVENIFLPIKPGKKLKNQSTHTIHLGYLIEENK 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            +LD+ L+ +F SP S+TGE+  E   HG   +   IL+ L +   +RLA PGEF+ RAF
Sbjct: 65  NLLDQVLISIFKSPFSYTGENMIEISCHGSYYIQQQILQLLIR-KGIRLARPGEFTFRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            N K+DL +AE++ADLISSE +    +S++ + G LS+L      KL    S +E +LDF
Sbjct: 124 LNKKVDLSQAEAVADLISSENKAYHEISLQQIKGRLSNLIKDLRIKLLDFASLLELELDF 183

Query: 179 SEEEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           SEE  +  F+++ E+ + +  LK  +   I    LG  I+ G  +VI+G  N GKS+ FN
Sbjct: 184 SEENVI--FANRSELFSFLQELKETLKDLIESFSLGNSIKKGVYVVIIGEPNVGKSTFFN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            + ++D +IV+ I GTTRD +   + L G L    DTAGIR+T D +E  G+++T  +++
Sbjct: 242 QVIQEDRSIVSHIKGTTRDCIEGKIILNGILFHFYDTAGIRKTIDPIEVMGVEKTMKKMD 301

Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
            + +IL               +++EI  K +  +P   D   I  KSDL  +Y +++ ++
Sbjct: 302 ESQMILYIFDSSSSEKKKQKRIVREIQ-KIQKKYPLK-DIFAIANKSDL--SYFQDFYNI 357

Query: 343 ---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
                    IS+     ++++++ + ++   +FK+    + +  RH   L  ++R + +A
Sbjct: 358 KSKVSYFFEISARNRHEVKKVLDTLSNLFFERFKEKKI-VVTQSRHYEALKLSLREVLLA 416

Query: 394 SLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +K    D+++  ++ A   LG+ITG V  E++L  IFSKFCIGK
Sbjct: 417 DEALKKGLSEDLVSIYIKEALRYLGEITGEVTSEEILKNIFSKFCIGK 464


>gi|242310493|ref|ZP_04809648.1| tRNA modification GTPase TrmE [Helicobacter pullorum MIT 98-5489]
 gi|239522891|gb|EEQ62757.1| tRNA modification GTPase TrmE [Helicobacter pullorum MIT 98-5489]
          Length = 461

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 146/461 (31%), Positives = 246/461 (53%), Gaps = 32/461 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGLDGRILDK 63
           +TI A +T    S+++IIRLSG    ++   + K   K P  R A L   +  +G +LD+
Sbjct: 7   DTIVAPATTYGKSSLNIIRLSGQDSLKIASKLAKIDLKNPKVRHAKLTKIYFENGELLDE 66

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++I F SP S+T ED  EF  HGG  +   ILEE  K    RLANPGEF++RAF  G+I
Sbjct: 67  CIIIYFKSPHSYTTEDVIEFQCHGGTFIAQNILEECLKY-GARLANPGEFTKRAFLGGRI 125

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +A+++A LI S      ++ M  ++GE+          L  + +  E  +D+++EE 
Sbjct: 126 DLSQAQAVAKLIESSNANAHKMLMRHLNGEMQEFCENLRTDLITLLAHSEVFIDYADEEL 185

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
            Q+   K + N +  +   + S + Q    + +  GYK+ I+G  N GKSS  NAL   +
Sbjct: 186 PQDLL-KNLQNKLTSILKTLQSLLEQSIQKKSLFEGYKLCIIGKPNVGKSSFLNALLHNE 244

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV+DI GTTRD +  +  LEG+L+++ DTAGIR++ DI+E +GI+R+  + + +D+++
Sbjct: 245 RAIVSDIAGTTRDSIEENFVLEGHLLRLIDTAGIRKSQDIIENKGIERSLQKAKESDILI 304

Query: 304 LLKEINSKKE------ISFPKNID----FIFIGTKSDLYSTYTEEYDHLISSFTGEGL-- 351
            L + +   +      I   KN       I +  K+DL + +  E   ++  F    L  
Sbjct: 305 ALFDSSRPLDHEDLEIIELLKNYQDSKKIIVLLNKTDLQNHFDSE---VLKPFLPLNLCL 361

Query: 352 -EELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQ--------TVRYLEMASLNEKD 399
               +N  +S+LSN FK    S+ + +   + L  +SQ         ++ L  + +  ++
Sbjct: 362 KNTNLNSQESLLSN-FKNHLISLLNSQESTQSLLLISQYQFQAVKNCIQALYDSKIPLEN 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L++ + ++  A  ++  IT   +  Q+LD++F +FC+GK
Sbjct: 421 GELELFSFHINEALRAIASITKPYEYSQMLDVMFGEFCLGK 461


>gi|301633488|gb|ADK87042.1| tRNA modification GTPase TrmE [Mycoplasma pneumoniae FH]
          Length = 442

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 140/454 (30%), Positives = 247/454 (54%), Gaps = 33/454 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGRILDK 63
           K+T+FA++T    SAI IIRLSGP  +++   I  K+ KP   +    +    + + +D 
Sbjct: 4   KQTMFALATAPFNSAIHIIRLSGPDVYRIINQITNKEVKPLGMRIQRVWLIDHNQKKVDD 63

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            LL  F +P S+TGED  E   HG + +VN I+  L K   ++ A PGEF++R + NGK+
Sbjct: 64  VLLFKFVAPNSYTGEDLIEISCHGSMVIVNEIIGLLLKHGAVQ-AQPGEFTQRGYLNGKM 122

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
            L +A S+ +L+ S     + +++  ++G++ +     ++KL  +   +E +LD+ E  D
Sbjct: 123 SLNQAASVNNLVLSPNTTLKDVALNALAGQVDARLEPLVEKLGQLVMQMEVNLDYPEYTD 182

Query: 184 VQN--FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            Q    +  + +  I  + N I   + Q +L  + ++ +KI I+G++N GKSSL NAL  
Sbjct: 183 EQRELVTMNQAVLQITQILNQIV--VGQDQLQRL-KDPFKIAIIGNTNVGKSSLLNALLD 239

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIV+ I G+TRD++  D  L G+ VKI DTAGIR+    +EK GI++TF  ++ A+L
Sbjct: 240 QDKAIVSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQHQSALEKAGIQKTFGAIKTANL 299

Query: 302 ILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           ++ L  +++++    PK I        DF  +  K+DL     ++   +  S   + ++ 
Sbjct: 300 VIYL--LDARQPEPDPKIIARLKKLKKDFFLVHNKADL----VQQSFQVSISAKQKQIQP 353

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY------LEMASLNEKDC-GLDIIA 406
           L++ +   L ++F    +S+  ++ +L    QT+        LE   + +++C   DI+ 
Sbjct: 354 LVDLLTQYL-HQF----YSVEQNQLYLISDWQTILLQKAIAELEHFLIKQQNCLFFDILV 408

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LR A   + ++ G      L++ IF  FC+GK
Sbjct: 409 VHLRAAHEYILQVLGKNTNYDLINEIFKHFCLGK 442


>gi|260425018|ref|ZP_05733999.2| tRNA modification GTPase TrmE [Dialister invisus DSM 15470]
 gi|260403939|gb|EEW97486.1| tRNA modification GTPase TrmE [Dialister invisus DSM 15470]
          Length = 485

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 146/463 (31%), Positives = 245/463 (52%), Gaps = 30/463 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDG 58
           +E+ TI A++T      I IIRLSG S  ++ +  F   K K F        +FG   DG
Sbjct: 28  YEETTIAAIATAPGEGGIGIIRLSGVSAAEIADKIFHTGKIKTFKEAVPYMMYFGHVTDG 87

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+GL +   +P S+TGED  E  +HG    +   L  LA       A  GEF++RA
Sbjct: 88  EKRIDEGLAVYMKAPHSYTGEDVVEIQIHGSAEALRETLA-LALRSGAVPAMRGEFTKRA 146

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ D+IS++ E     +   +SG LS      +++L  + + +E  +D
Sbjct: 147 FLNGRLDLAQAEAVMDIISAKGEAALTQAESHLSGALSGFVHGVMEELKDLITKLEVTID 206

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + EE D+++ + +E  + +  +   +S+ + + + G +IR G +  I+G  NAGKSSL N
Sbjct: 207 YPEE-DLEDLTMEETGDALEKIDKSLSALLKRSEEGRVIREGLRTAIIGRPNAGKSSLLN 265

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL +++ AIVTD+PGTTRD +   + + G  + + DTAG+RETD+ VE+ GI+R    +E
Sbjct: 266 ALLQEERAIVTDVPGTTRDTIEEAVRISGVSLLLMDTAGLRETDNKVEQIGIERARASME 325

Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
            ADLIL               +L  +  KK I      D        D++          
Sbjct: 326 KADLILAVIDGSSPLDEEDKEILHSLVGKKAIVILNKYDLTPEVKAEDIWEIAGHVPVVS 385

Query: 343 ISSFTGEGLEELINKIKSILSNK---FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           +S+  G G++EL  +++ I   +     ++ F   ++ RH+  + + +  +  A  + ++
Sbjct: 386 LSARYGSGMDELREELRKITEKQDTDAGRILF--LTNLRHVELVRKALDNVLRARASVRE 443

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            GL  D I  +L  A  ++G+ITG    ++L+  IFS+FC+GK
Sbjct: 444 -GLQADFIVIDLTEAWKTMGEITGDTMDDELIHSIFSRFCVGK 485


>gi|240145748|ref|ZP_04744349.1| tRNA modification GTPase TrmE [Roseburia intestinalis L1-82]
 gi|257202164|gb|EEV00449.1| tRNA modification GTPase TrmE [Roseburia intestinalis L1-82]
          Length = 457

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 246/461 (53%), Gaps = 33/461 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG----LDGR 59
           +TI A++T    S I IIR+SG     + +  F  K  K      +    +G    +D  
Sbjct: 4   DTIAAIATAMSSSGIGIIRISGDEAVGIVDRIFSMKNGKKLSDMPTHTIHYGHIKDVD-E 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ ++++  +P+S+T ED+ E   HGG+ V+  +LE + K    R A PGEF++RAF 
Sbjct: 63  VIDEVMVVLMRAPKSYTKEDTVEIDCHGGVYVMKRVLETVIKY-GARPAEPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AES+ D+I ++ E   + S + +SG LS+   +  +KL H  +FIE+ LD  
Sbjct: 122 NGRIDLAQAESVIDIIHAKNEFALKSSEQQLSGSLSAAVRKVREKLLHEIAFIESALDDP 181

Query: 180 EEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           E   +  +   E L+ I+   + +I   ++    G+I++ G   VI+G  NAGKSSL N 
Sbjct: 182 EHISLDGYP--ETLHGIVEEAQKEIQKLLANSDNGKILKEGISTVIIGKPNAGKSSLLNT 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVTDI GTTRDVL   ++L G ++ + DTAGIRETDD+VEK G+ R    +  
Sbjct: 240 LVGEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDVVEKIGVDRAKKYLNE 299

Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE--YDHL------IS 344
           ADL + + + +++ +      +   K+   I +  KSDL      E    HL      IS
Sbjct: 300 ADLAIYVVDTSTQLDENDFEIMELLKDRKAIVLLNKSDLTPVTDSESIRKHLDKKMIAIS 359

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           +    G+EEL   I+ +      ++ F+     ++ RH   L +    L +   +  D G
Sbjct: 360 AKEQTGIEELEETIREMFFT--GEVTFNDEVYITNIRHKTALQEARNSLNLVVQSILD-G 416

Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  D  + +L  A   LG I G    + L++ IFSKFC+GK
Sbjct: 417 MPEDFYSIDLMNAYEELGSIVGEAVEDDLVNEIFSKFCMGK 457


>gi|237741002|ref|ZP_04571483.1| thiophene and furan oxidation protein thdf [Fusobacterium sp.
           4_1_13]
 gi|229431046|gb|EEO41258.1| thiophene and furan oxidation protein thdf [Fusobacterium sp.
           4_1_13]
          Length = 455

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 243/459 (52%), Gaps = 31/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61
           +TI A+ST      ISI+R+SG     + E I K   KK    +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFKPKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVILK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ EE
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   + +++++     +I   +S    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 183 -GIDDPVPENLVDNLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           IL + +               IN+ K I     ID   I   +DL      E    IS+ 
Sbjct: 302 ILYVIDTSREIDEEDYRIYDIINTDKVIGILNKID---IKRNTDLSEFPKIEKWIEISAL 358

Query: 347 TGEGLEELINKI-----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           +  G++ L N+I     K  + +  +KL  +   HK  L   ++ +  L +    +    
Sbjct: 359 SKTGIDNLENEIYKYIMKENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMGLP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++A +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|161508218|ref|YP_001578189.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DPC 4571]
 gi|205415770|sp|A8YTQ7|MNME_LACH4 RecName: Full=tRNA modification GTPase mnmE
 gi|160349207|gb|ABX27881.1| Thiophene and furan oxidation protein [Lactobacillus helveticus DPC
           4571]
          Length = 461

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 149/469 (31%), Positives = 258/469 (55%), Gaps = 46/469 (9%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD-- 57
           E +TI A+ST      ISI+R+SG    ++   + K     K P     ++ Y   +D  
Sbjct: 7   EFDTIAAISTPIGEGGISIVRMSGEDAVKIANEVFKGADLTKVP---THTIHYGHIVDPD 63

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++R
Sbjct: 64  TDKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSH-GARMADPGEFTKR 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFI 172
           AF NG+IDL +AES+ D++ ++T+  R++++  ++G    ++ ++  + +D L ++    
Sbjct: 123 AFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILDTLANV---- 178

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E ++D+ E  D    ++K++ +    +   I   +   + G+I+RNG    I+G  N GK
Sbjct: 179 EVNIDYPEY-DADTVTAKQMADTAKSVIKKIDRLLKTAQEGKILRNGLATAIVGRPNVGK 237

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  TDD VEK G++R+
Sbjct: 238 SSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVERS 297

Query: 293 FLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEE------ 338
              ++ ADL+LLL  I++ +E++          K+   I +  KSDL    T +      
Sbjct: 298 KKALDRADLVLLL--IDASQELTAEDKALIEETKDKKRIIVLNKSDLGQKITVDEMKKQT 355

Query: 339 -YDHLISSFTGE----GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE- 391
             D +++S   E     LEELINK+  + + N   ++   + +++R    L++  + L+ 
Sbjct: 356 GSDVILTSILKEKNLDKLEELINKLFFAGIENSNDQV---MVTNQRQTSLLTKAKKELQD 412

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +    E    +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 413 VVQAVEDGIPIDIAQIDFTGAWDTLGEITGESAPDELVTQLFSQFCLGK 461


>gi|154499098|ref|ZP_02037476.1| hypothetical protein BACCAP_03090 [Bacteroides capillosus ATCC
           29799]
 gi|150271938|gb|EDM99164.1| hypothetical protein BACCAP_03090 [Bacteroides capillosus ATCC
           29799]
          Length = 458

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 152/476 (31%), Positives = 232/476 (48%), Gaps = 61/476 (12%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL----DGR 59
           +TI AV+T     AI I+RLSGP   +    + K    +        R  +G     +G 
Sbjct: 3   DTIAAVATPMARGAIGILRLSGPEAVRAASAVFKSVSGRALEEYEGRRLVYGTLYDREGN 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ L      P S+TGED+AE   HG  AV+   LE L     +R A PGEF+RRAF 
Sbjct: 63  AIDQVLATYTRGPGSYTGEDTAELQCHGSPAVLTLGLEALFAQ-GVRQAGPGEFTRRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++ADLI +ET    R +   +SG L        D LT + +   A LD+ 
Sbjct: 122 NGRLDLTQAEAVADLIDAETASAVRQAAGQLSGALGRRVAAVYDALTDLTAHFCAVLDYP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +E D+  F ++ +   +   + ++S+ ++    G  + +G    I+G  NAGKSSL NAL
Sbjct: 182 DE-DIDPFRAETMERALSQAQRELSALLATYGRGRQLVHGVPCAIVGRPNAGKSSLLNAL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE-- 297
              D AIVTDIPGTTRD +     L G L+++ DTAG+R+T D VE+ G++R+   +   
Sbjct: 241 VGYDRAIVTDIPGTTRDTIEEKCRLGGVLLRLIDTAGLRDTTDTVEQLGVERSRAALAEA 300

Query: 298 -------------NADLILLLKEINSKKEISFPKNIDFIFIGTKSDL-------YSTYTE 337
                         A+ + +L++  +  E         I + TKSDL        + + E
Sbjct: 301 ELALVLIDPQGGVTAEDLAILEQARAAAE-------KVIVVLTKSDLDRGPCIGLTLWGE 353

Query: 338 EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-- 393
               ++  S+ TGEGLEEL   + ++            P  + +   L    R  E A  
Sbjct: 354 NCPPVVSLSAKTGEGLEELEAAVAALF-----------PQGEENWGELLTNARQAEAAGR 402

Query: 394 -------SLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                  +L+    G+  D +  ++  A  +LG +TG    E + D IFS+FC+GK
Sbjct: 403 ALEAVGSALSALTAGIPADAVFSDVEAALDALGALTGRSVQEDVTDRIFSRFCVGK 458


>gi|260101882|ref|ZP_05752119.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DSM 20075]
 gi|260084310|gb|EEW68430.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DSM 20075]
 gi|328463992|gb|EGF35490.1| tRNA modification GTPase TrmE [Lactobacillus helveticus MTCC 5463]
          Length = 461

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 149/469 (31%), Positives = 258/469 (55%), Gaps = 46/469 (9%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD-- 57
           E +TI A+ST      ISI+R+SG    ++   + K     K P     ++ Y   +D  
Sbjct: 7   EFDTIAAISTPIGEGGISIVRMSGEDAVKIANEVFKGADLTKVP---THTIHYGHIVDPD 63

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++R
Sbjct: 64  TDKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSH-GARMADPGEFTKR 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFI 172
           AF NG+IDL +AES+ D++ ++T+  R++++  ++G    ++ ++  + +D L ++    
Sbjct: 123 AFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILDTLANV---- 178

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E ++D+ E  D    ++K++ +    +   I   +   + G+I+RNG    I+G  N GK
Sbjct: 179 EVNIDYPEY-DADTVTAKQMTDTAKSVIKKIDRLLKTAQEGKILRNGLATAIVGRPNVGK 237

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  TDD VEK G++R+
Sbjct: 238 SSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVERS 297

Query: 293 FLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEE------ 338
              ++ ADL+LLL  I++ +E++          K+   I +  KSDL    T +      
Sbjct: 298 KKALDRADLVLLL--IDASQELTAEDKALIEETKDKKRIIVLNKSDLGQKITVDEMKKQT 355

Query: 339 -YDHLISSFTGE----GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE- 391
             D +++S   E     LEELINK+  + + N   ++   + +++R    L++  + L+ 
Sbjct: 356 GSDVILTSILKEKNLDKLEELINKLFFAGIENSNDQV---MVTNQRQTSLLTKAKKELQD 412

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +    E    +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 413 VVQAVEDGIPIDIAQIDFTGAWDTLGEITGESAPDELVTQLFSQFCLGK 461


>gi|34763011|ref|ZP_00143987.1| THIOPHENE AND FURAN OXIDATION PROTEIN THDF [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887312|gb|EAA24406.1| THIOPHENE AND FURAN OXIDATION PROTEIN THDF [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 455

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 243/459 (52%), Gaps = 31/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61
           +TI A+ST      ISI+R+SG     + E I K   KK    +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFKPKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ EE
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   + +++++     +I   +S    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 183 -GIDDPVPENLVDNLKKASAEIRDLVSSYNKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           IL + +               IN+ K I     ID   I   +DL      E    IS+ 
Sbjct: 302 ILYVIDTSREIDEEDYRIYDIINTDKVIGILNKID---IKRNTDLSEFPKIEKWIEISAL 358

Query: 347 TGEGLEELINKI-----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           +  G++ L N+I     K  + +  +KL  +   HK  L   ++ +  L +    +    
Sbjct: 359 SKTGIDNLENEIYKYIMKENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMGLP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++A +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|148545139|ref|YP_001272509.1| tRNA modification GTPase TrmE [Lactobacillus reuteri DSM 20016]
 gi|184154471|ref|YP_001842812.1| tRNA modification GTPase TrmE [Lactobacillus reuteri JCM 1112]
 gi|148532173|gb|ABQ84172.1| tRNA modification GTPase trmE [Lactobacillus reuteri DSM 20016]
 gi|183225815|dbj|BAG26332.1| thiophene and furan oxidation protein ThdF [Lactobacillus reuteri
           JCM 1112]
          Length = 462

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 143/463 (30%), Positives = 252/463 (54%), Gaps = 27/463 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD-- 57
           N E +TI A+ST      ISIIR+SG    +V + I K K    + A+    +G  +D  
Sbjct: 3   NSENDTIAAISTPVGEGGISIIRISGDDAVKVAQRIYKGKN-LAKVATHTINYGHIVDPD 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ ++ V  +P ++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 62  TDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQ-LVLSFGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL ++E++ DLI ++T+   ++++  + G+LS L       +  + + +E ++
Sbjct: 121 AFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  ++K +      ++  I   +   K G+++R+G    I+G  N GKSSL 
Sbjct: 181 DYPEYDAVEEMTTKLLKEKAADIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  +D AIVT++ GTTRDV+   +++ G  +K+ DTAGIR+T+D VEK G++R+   +
Sbjct: 241 NSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVERSRKAL 300

Query: 297 ENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG-- 348
             ADL+LLL + ++K      + +   K+   I I  K+DL          L++  +   
Sbjct: 301 GAADLVLLLIDSSNKLTDEDRQLLEATKDKQRIIILNKTDLPRKVDLAELKLLAGKSAVI 360

Query: 349 -------EGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397
                  EG+++L  +I  +  N+         + ++ RH+  L Q    L   +  +N+
Sbjct: 361 ETSIVNYEGMDQLGEQIGHMFFNEGIESNQNNVMVTNARHIGLLHQANDALSDVLKGIND 420

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 421 G-MPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 462


>gi|237743154|ref|ZP_04573635.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 7_1]
 gi|229433450|gb|EEO43662.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 7_1]
          Length = 455

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 149/459 (32%), Positives = 243/459 (52%), Gaps = 31/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61
           +TI A+ST      ISI+R+SG     + E I +   KK    +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRPKNKKVSELKNCSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ EE
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   + +++++     +I   +S    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 183 -GIDDPVPENLVDNLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDI+E  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENIGVEKSKELINSADL 301

Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           IL + +               IN+ K I     ID   I    DL      E    IS+ 
Sbjct: 302 ILYVIDTSRKIDEEDFRIYDIINTDKVIGILNKID---IKKDIDLSKFSKIEKWVEISAL 358

Query: 347 TGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           +  G++ L N+I   + N+      +KL  +   HK  L   ++ +  L +    +K   
Sbjct: 359 SKIGIDNLENEIYKFIMNENIEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDKGFP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++A +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|294673439|ref|YP_003574055.1| tRNA modification GTPase TrmE [Prevotella ruminicola 23]
 gi|294472346|gb|ADE81735.1| tRNA modification GTPase TrmE [Prevotella ruminicola 23]
          Length = 448

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 148/450 (32%), Positives = 241/450 (53%), Gaps = 20/450 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKG 64
           +TI A++T A   AI I+R+SG    ++   +  K     +  ++ Y    +G  I+D+ 
Sbjct: 4   DTICALAT-APGGAIGIVRISGNETLEILSRVFTKDLTNAQPNTIHYGHIRNGEEIVDEV 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+ VF +P S+TGE+SAE   HG   ++N +L  L      R A PGEF++RA+ NGK+D
Sbjct: 63  LVSVFRAPHSYTGEESAEISCHGSRYILNKVLA-LLIANGCRQAGPGEFTQRAYLNGKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI+S  +   +++M  + G  SS   Q  ++L  + S +E +LDFS+ ED+
Sbjct: 122 LSQAEAVADLIASTNQATHQIAMSQLRGHFSSKLAQLREQLLKLTSLLELELDFSDHEDL 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +     E+++    + N I+      + G+ ++ G  + I+G +N GKS+L N L K D 
Sbjct: 182 EFADRSELMDLTKTIDNHITRLAKSFETGQALKQGIPVAIVGKTNVGKSTLLNRLLKDDR 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+D+ GTTRD +   +D+ G   +  DTAGIR+T D VE+ GI RT+  ++ A ++L 
Sbjct: 242 AIVSDVHGTTRDTIEDTIDINGITFRFIDTAGIRQTQDEVEQIGITRTYAAIDKARIVLW 301

Query: 305 LKEINSKKE-----ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGLEE 353
           L +     E     +   +N   I I  K+D        Y+ L      IS+  G G+EE
Sbjct: 302 LIDAEPSTEEINDILQHTENKKLIVIKNKAD--KADNNSYNLLNYPFITISAKFGTGIEE 359

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRL 411
           L   I    +         I ++ RH   L +    ++  +  L  +  G D+++E+LR 
Sbjct: 360 LEQAIYEAANIPALTENDIIVTNARHYDALVRAHDNIQRVIDGLQMQLSG-DLLSEDLRQ 418

Query: 412 ASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
           A  +L +ITG  +   ++L  IF  FC+GK
Sbjct: 419 ALDTLAEITGGQITPNEVLGNIFKNFCVGK 448


>gi|15834695|ref|NP_296454.1| tRNA modification GTPase TrmE [Chlamydia muridarum Nigg]
 gi|270284862|ref|ZP_06194256.1| tRNA modification GTPase TrmE [Chlamydia muridarum Nigg]
 gi|270288890|ref|ZP_06195192.1| tRNA modification GTPase TrmE [Chlamydia muridarum Weiss]
 gi|301336241|ref|ZP_07224443.1| tRNA modification GTPase TrmE [Chlamydia muridarum MopnTet14]
 gi|14195291|sp|Q9PLM9|MNME_CHLMU RecName: Full=tRNA modification GTPase mnmE
 gi|8163124|gb|AAF73529.1| thiophene and furan oxidation protein ThdF [Chlamydia muridarum
           Nigg]
          Length = 444

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 154/455 (33%), Positives = 230/455 (50%), Gaps = 31/455 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           + +TI A++T     +++I+R+SGP    +   I          AS     G    +   
Sbjct: 3   QNDTIAAIATPPGEGSVAIVRVSGPDAISISNRIFSGN--IAGYASHTAHLGTVVHNEVC 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+++  +P SFTGED  EF  HGG    + IL  L      R A PGEFS+RAF N
Sbjct: 61  IDQALVLIMRTPRSFTGEDIVEFQCHGGYFACSQILNALLA-EGARAALPGEFSQRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL++AE++  LIS+E      ++     G  S         +    ++IE   DF E
Sbjct: 120 GKIDLIQAEAIQQLISAENIDAFHIAQNQFQGHTSQAISSISSLIIEALAYIEVLADFPE 179

Query: 181 EEDVQNFSSKEV--LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           E D++   S  V  + + L +  ++ S   +G+    +  G  IV+ G  NAGKSS+ NA
Sbjct: 180 E-DIETERSLPVQKITEALTITQELLSSFDEGQR---LAQGTSIVLAGLPNAGKSSILNA 235

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +K+ AIVTDIPGTTRD+L  +  L+G  +++ D+AGIRET++IVEKEGI+R    +  
Sbjct: 236 LTQKNRAIVTDIPGTTRDILEENWVLQGKNLRLIDSAGIRETENIVEKEGIERARQAMSQ 295

Query: 299 ADLILLLKEINSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLE 352
           A+ IL + +  S+    FP  +     I +  K D+ S    E       +S+ TG+G  
Sbjct: 296 AEGILWVMDA-SQPVPEFPAILYQKPTILLWNKCDVASPPQLEVPFQQIFVSAKTGKGFS 354

Query: 353 ELINKIKSILSN----KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLDII 405
           EL   +   L      K  K+ F + +    L H   T     +    E    +C    +
Sbjct: 355 ELRQALNKWLHTTQLGKSSKV-FLVSARHHSLLHAVHTCLTDALTGFQEHLPNEC----L 409

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A +LR A  S+G ++G    E +L  IFSKFCIGK
Sbjct: 410 ALDLRQALHSIGNLSGSEVTENVLGEIFSKFCIGK 444


>gi|197302262|ref|ZP_03167321.1| hypothetical protein RUMLAC_00989 [Ruminococcus lactaris ATCC
           29176]
 gi|197298693|gb|EDY33234.1| hypothetical protein RUMLAC_00989 [Ruminococcus lactaris ATCC
           29176]
          Length = 477

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/344 (37%), Positives = 194/344 (56%), Gaps = 15/344 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGR-IL 61
           K+TI A+STG   S I I+RLSG    ++ + + + K+      S    +G   DG   +
Sbjct: 3   KDTIAAISTGMTNSGIGIVRLSGNEALEIADKVYRGKEKITEVPSHTIHYGHIADGEETV 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L++V   P +FTGED+ E + HGG  VV+ +LE + K    R A PGEF++RAF NG
Sbjct: 63  DEVLMMVMHGPRTFTGEDTVEINCHGGTYVVSRVLETVLKY-GARAAEPGEFTKRAFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ DLI+SE E   + S+  + G + S   +   K+ +  +FIE  LD  E 
Sbjct: 122 KMDLSQAEAVIDLINSENEYALQSSVSQLKGSVKSAINELRSKILYHTAFIETALDDPEH 181

Query: 182 EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
             V  +    K V  +I+     +   I     G I++ G + VI+G  NAGKSSL N L
Sbjct: 182 ISVDGYGEILKGVSEEII---EKLQKLIDSADDGRIMKEGIQTVIVGKPNAGKSSLLNLL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A  + AIVTDI GTTRDVL   + L+G  + + DTAGIR+T+D+VEK G+ +     + A
Sbjct: 239 AGHERAIVTDIAGTTRDVLEEQIRLQGLNLNVIDTAGIRQTEDLVEKMGVDKAKEYAQKA 298

Query: 300 DLILLLKEINSKKEISFPKNIDFIF------IGTKSDLYSTYTE 337
           DLI+ + + + K + +  K ++ I+      +  KSDL +   E
Sbjct: 299 DLIIYVVDASKKLDENDEKIMELIYDKKAIILLNKSDLETVVDE 342


>gi|77920732|ref|YP_358547.1| tRNA modification GTPase TrmE [Pelobacter carbinolicus DSM 2380]
 gi|77546815|gb|ABA90377.1| tRNA modification GTPase trmE [Pelobacter carbinolicus DSM 2380]
          Length = 461

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 240/459 (52%), Gaps = 31/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61
           +TI A +T      I I+RLSG    ++       ++   R  S   ++G      G+I+
Sbjct: 10  DTIVAPATAPGEGGIGIVRLSGSGAEKLLLKFFSPRRFCERLDSHFLYYGKFTDETGKIV 69

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ + ++   P S+T ED  E H HGG  +V  I++        RLA PGEF+ RAF NG
Sbjct: 70  DEVMAVIMRKPRSYTREDVVEIHCHGGGLLVRSIIDVFLA-AGARLARPGEFTLRAFLNG 128

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ DLI S + +   +++  + G L+   G +   +  + + +EA +DF EE
Sbjct: 129 RIDLTQAEAVIDLIRSRSNLASDVALSQLEGRLAQQIGVFGQVIADLLAQVEAAIDFPEE 188

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D++    + +      L  D+   I   + G ++R G +++I G  N GKSSL N L  
Sbjct: 189 -DIELDDQQMLGASAGALIADMDRIIDTFESGRVLREGLRVLIFGKPNVGKSSLMNGLLG 247

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +  AIVTDIPGTTRD +  DL L G  ++I DTAGIR T D VE+EG++R   +VE+ADL
Sbjct: 248 EARAIVTDIPGTTRDTIEEDLVLGGLPLRIVDTAGIRNTLDPVEEEGVRRARSKVESADL 307

Query: 302 ILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYS-TYTEEYDHL----ISSFTG 348
           +LL+  I+  +E+         F +N + + +  K DL +   +   D L     S    
Sbjct: 308 VLLV--IDGSQEMGEDDLLALEFCRNREVLVVINKCDLATLPISSALDGLPYVRTSVLEK 365

Query: 349 EGLEELINKIK------SILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCG 401
            GL+ L++ I+      + ++   + +  +   H++ L    Q++ R+ E      +   
Sbjct: 366 NGLDGLVSAIQERFVHNAHVAENRETVVLTQRRHRQALVKARQSLGRFRETLV---QGMS 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  A  LR A  ++G+ITG    + +L+ IF++FCIGK
Sbjct: 423 PEFGAVELRDALDAVGEITGETTPDDILERIFTRFCIGK 461


>gi|205422380|sp|Q39ZT0|MNME_PELCD RecName: Full=tRNA modification GTPase mnmE
          Length = 456

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 240/459 (52%), Gaps = 31/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61
           +TI A +T      I I+RLSG    ++       ++   R  S   ++G      G+I+
Sbjct: 5   DTIVAPATAPGEGGIGIVRLSGSGAEKLLLKFFSPRRFCERLDSHFLYYGKFTDETGKIV 64

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ + ++   P S+T ED  E H HGG  +V  I++        RLA PGEF+ RAF NG
Sbjct: 65  DEVMAVIMRKPRSYTREDVVEIHCHGGGLLVRSIIDVFLA-AGARLARPGEFTLRAFLNG 123

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ DLI S + +   +++  + G L+   G +   +  + + +EA +DF EE
Sbjct: 124 RIDLTQAEAVIDLIRSRSNLASDVALSQLEGRLAQQIGVFGQVIADLLAQVEAAIDFPEE 183

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D++    + +      L  D+   I   + G ++R G +++I G  N GKSSL N L  
Sbjct: 184 -DIELDDQQMLGASAGALIADMDRIIDTFESGRVLREGLRVLIFGKPNVGKSSLMNGLLG 242

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +  AIVTDIPGTTRD +  DL L G  ++I DTAGIR T D VE+EG++R   +VE+ADL
Sbjct: 243 EARAIVTDIPGTTRDTIEEDLVLGGLPLRIVDTAGIRNTLDPVEEEGVRRARSKVESADL 302

Query: 302 ILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYS-TYTEEYDHL----ISSFTG 348
           +LL+  I+  +E+         F +N + + +  K DL +   +   D L     S    
Sbjct: 303 VLLV--IDGSQEMGEDDLLALEFCRNREVLVVINKCDLATLPISSALDGLPYVRTSVLEK 360

Query: 349 EGLEELINKIK------SILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCG 401
            GL+ L++ I+      + ++   + +  +   H++ L    Q++ R+ E      +   
Sbjct: 361 NGLDGLVSAIQERFVHNAHVAENRETVVLTQRRHRQALVKARQSLGRFRETLV---QGMS 417

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  A  LR A  ++G+ITG    + +L+ IF++FCIGK
Sbjct: 418 PEFGAVELRDALDAVGEITGETTPDDILERIFTRFCIGK 456


>gi|227364302|ref|ZP_03848395.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM2-3]
 gi|325683501|ref|ZP_08163017.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM4-1A]
 gi|227070615|gb|EEI08945.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM2-3]
 gi|324977851|gb|EGC14802.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM4-1A]
          Length = 477

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 143/463 (30%), Positives = 252/463 (54%), Gaps = 27/463 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD-- 57
           N E +TI A+ST      ISIIR+SG    +V + I K K    + A+    +G  +D  
Sbjct: 18  NSENDTIAAISTPVGEGGISIIRISGDDAVKVAQRIYKGKN-LAKVATHTINYGHIVDPD 76

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ ++ V  +P ++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 77  TDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQ-LVLSFGARMAEPGEFTKR 135

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL ++E++ DLI ++T+   ++++  + G+LS L       +  + + +E ++
Sbjct: 136 AFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLAQVEVNI 195

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  ++K +      ++  I   +   K G+++R+G    I+G  N GKSSL 
Sbjct: 196 DYPEYDAVEEMTTKLLKEKAADIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNVGKSSLL 255

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  +D AIVT++ GTTRDV+   +++ G  +K+ DTAGIR+T+D VEK G++R+   +
Sbjct: 256 NSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVERSRKAL 315

Query: 297 ENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG-- 348
             ADL+LLL + ++K      + +   K+   I I  K+DL          L++  +   
Sbjct: 316 GAADLVLLLIDSSNKLTDEDRQLLEATKDKQRIIILNKTDLPRKVDLAELKLLAGKSAVI 375

Query: 349 -------EGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397
                  EG+++L  +I  +  N+         + ++ RH+  L Q    L   +  +N+
Sbjct: 376 ETSIVNYEGMDQLGEQIGHMFFNEGIESNQNNVMVTNARHIGLLHQANDALSDVLKGIND 435

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 436 G-MPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 477


>gi|299140501|ref|ZP_07033639.1| tRNA modification GTPase TrmE [Prevotella oris C735]
 gi|298577467|gb|EFI49335.1| tRNA modification GTPase TrmE [Prevotella oris C735]
          Length = 455

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 145/464 (31%), Positives = 244/464 (52%), Gaps = 44/464 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL---DGRI 60
           TI A++T A   AI I+R+SG    ++ + +     KK     K +  ++  +    G I
Sbjct: 6   TICALATSA-GGAIGIVRVSGDKAIEITDRVFSGIGKKSLLEAKGNTVHYGEIHDQQGNI 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ VF +P S+TGED  E   HG   V++ +++ L      R A PGEF++RA+ N
Sbjct: 65  IDEVLVSVFRAPHSYTGEDCTEISCHGSTYVLSQVVKVLID-AGCRQAAPGEFTKRAYLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI+S  +   +L++  + G  SS   +  ++L  I S +E +LDFS+
Sbjct: 124 GKMDLSQAEAVADLIASTNKASHKLALSQLKGHFSSELSRLREQLLKITSLLELELDFSD 183

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+++     E+      +   I++ I   + G  ++ G  + I+G +N GKS+L N L 
Sbjct: 184 HEELEFADRSELKTLAEKIHGRIATLIHSFETGNALKKGIPVAIIGKTNVGKSTLLNCLL 243

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIV++I GTTRDV+    +++G   +  DTAGIRET D+VE+ GI+R + ++  A 
Sbjct: 244 HEDKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTAGIRETKDVVEQLGIERAYKKIGEAT 303

Query: 301 LILLL-------KEINSKKEISFPKNIDFIF----------IGTKSDLYSTYTEEYDHLI 343
           ++L +       +E    ++++  K +  +F          I   S L+  Y       I
Sbjct: 304 IVLWVVDEQPTTEEYTEIQQLTAEKKLLLVFNKMDRKEFKPITINSKLHVIY-------I 356

Query: 344 SSFTGEGLEEL---INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKD 399
           S+   + + EL   I ++  I       +  +   H   L H + ++ R +E       D
Sbjct: 357 SAKHKQNMAELETAIYEVADIPEITENSIIVTNARHYEALVHANDSILRVIEAM-----D 411

Query: 400 CGL--DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
            GL  D+I+E+LRL    L +ITG  +   ++L+ IF  FCIGK
Sbjct: 412 TGLSGDLISEDLRLCLEQLAEITGGQITTNEVLENIFKHFCIGK 455


>gi|237736115|ref|ZP_04566596.1| thiophene and furan oxidation protein ThdF [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421826|gb|EEO36873.1| thiophene and furan oxidation protein ThdF [Fusobacterium
           mortiferum ATCC 9817]
          Length = 456

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 152/459 (33%), Positives = 247/459 (53%), Gaps = 30/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDG-RI 60
           +TI A+ST      I I+R+SG   F + + I K    KK    R  S+ Y    DG ++
Sbjct: 4   DTIAAISTPRGEGGIGIVRISGSDAFTILKKIFKPKSGKKIEELRNFSINYGHIYDGEQL 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ ++ +  +P ++T E+  E + HGG  +   +LE + K    R A  GEF+RRAF N
Sbjct: 64  IDEVMVSIMKAPHTYTKENIVEINCHGGFVITEKLLETVLKY-GARHAEIGEFTRRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ E
Sbjct: 123 GRIDLTQAEAIIDIIHGKTEKSVSLSLNQLRGDLKEQIEHLKKLILDVAAHINVVLDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  + +   + ++ ++  + +     I     G++I+ G K  I+G  N GKSSL N++ 
Sbjct: 183 E-GIDDPLPENLVGNLQEVVDTTDRLIKSYDKGKMIKEGIKTAIVGKPNVGKSSLLNSVL 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVT IPGTTRDV+   ++L+G  + + DTAGIR+TDDIVE  G++++   +ENAD
Sbjct: 242 REERAIVTHIPGTTRDVIEEVVNLKGIPLILVDTAGIRKTDDIVENIGVEKSKKMIENAD 301

Query: 301 LILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-IS 344
           LIL +               + INS+K I     ID      K DL S  T+  + + IS
Sbjct: 302 LILFVIDGSRELEEEDIKIHESINSEKVIGILNKIDM---ERKVDL-SKLTKIKNWIEIS 357

Query: 345 SFTGEGLEELINKI-KSILSNKFKKLPFSIP-SHKRHLYHLSQTVRYLE-MASLNEKDCG 401
           +    G++E+ +KI   I+    +     I  ++ RH   L +T +Y+E +         
Sbjct: 358 AMKNIGIDEMEDKIYHHIVDGNVEDSSQKITITNVRHKSALEKTKQYVENIFDTIHAGLP 417

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++A +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 418 MDLMAVDIKGALNSLSEVTGEISSEDLLDHIFSNFCVGK 456


>gi|227893842|ref|ZP_04011647.1| tRNA modification GTP-binding protein TrmE [Lactobacillus
           ultunensis DSM 16047]
 gi|227864331|gb|EEJ71752.1| tRNA modification GTP-binding protein TrmE [Lactobacillus
           ultunensis DSM 16047]
          Length = 461

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 150/467 (32%), Positives = 254/467 (54%), Gaps = 42/467 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD-- 57
           E +TI A+ST      ISI+R+SG    ++   + K     K P     ++ Y   +D  
Sbjct: 7   EFDTIAAISTPIGEGGISIVRMSGEDAVKIANKVFKGADLSKVP---THTIHYGHIIDPH 63

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G+ +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L      R+A PGEF++R
Sbjct: 64  TGKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLS-NGARMAEPGEFTKR 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFI 172
           AF NG+IDL +AES+ D++ ++T+  R++++  ++G    ++ +L  + +D L ++    
Sbjct: 123 AFVNGRIDLTQAESVMDIVRAKTDKARQVAVHQLAGGLLHKIRALRQEILDTLANV---- 178

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E ++D+ E  D    ++K++ +    +   I   +   + G+I+RNG    I+G  N GK
Sbjct: 179 EVNIDYPEY-DADQVTAKQMSDTATDVIKKIDRLLKTAQEGKILRNGLATAIVGRPNVGK 237

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  T+D VEK G++R+
Sbjct: 238 SSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVERS 297

Query: 293 FLEVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEY------- 339
              +E ADL+LLL + +       K  I   K+   I I  KSDL    T +        
Sbjct: 298 KKALERADLVLLLIDASQDLTAEDKALIEETKSKKRIIILNKSDLGQKITVDQMKKLTGS 357

Query: 340 DHLISSFTGE----GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MA 393
           D + +S   E     LEE+INK+  + + N   ++   + +++R    L++  + L+ + 
Sbjct: 358 DVISTSILQEKNLDDLEEMINKLFFAGIENSNDQI---MVTNQRQASLLTKAKKELQDVV 414

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +    +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 415 QAVDNGIPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|150392473|ref|YP_001322522.1| tRNA modification GTPase TrmE [Alkaliphilus metalliredigens QYMF]
 gi|166988167|sp|A6TXE5|MNME_ALKMQ RecName: Full=tRNA modification GTPase mnmE
 gi|149952335|gb|ABR50863.1| tRNA modification GTPase TrmE [Alkaliphilus metalliredigens QYMF]
          Length = 461

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 148/466 (31%), Positives = 248/466 (53%), Gaps = 40/466 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPF----PRKASLRYFFGLD-G 58
           +TI A++T    + I I+R+SG     + +  F  K+ K      PR+ +  +    +  
Sbjct: 5   DTIAAIATAHGEAGIGIVRISGEKALHIIDQVFQSKQGKKLKDISPRRITYGHIIDTERN 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+     P ++T ED  E + HGG+  V  ILE + +    R A+ GEF++RAF
Sbjct: 65  ERIDEVLVSYMKGPHTYTTEDVVEINCHGGMIPVKRILELILR-KGARAADAGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DL+S++T+M   +++  + G LS    +  D+L  + + IE  +DF
Sbjct: 124 LNGRIDLAQAEAVMDLVSAKTDMGFDVALNQLEGSLSKRVKKVKDELLDMLAHIEVSIDF 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+E DV   +   +L   + ++  I   +     G+I+R G   VI+G  N GKSSL NA
Sbjct: 184 SDE-DVDEVTLDLLLKQSMEIEKKIKVLLETADTGKILREGLNTVIVGKPNVGKSSLLNA 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L K+  AIVT++PGTTRD +    ++ G  + + DTAGIRET+DIVEK G++R+      
Sbjct: 243 LLKESRAIVTEVPGTTRDAIEEHFNIRGIPLNLIDTAGIRETEDIVEKIGVERSKAFFNK 302

Query: 299 ADLILLLKEINSKKEISFPKNIDF---------IFIGTKSDLYSTYTEEYDHLISSFTGE 349
           ADLI+L+  +++ +E++ P+++           + +  K+DL S    +YD +I    GE
Sbjct: 303 ADLIILM--LDASRELT-PEDLQIMELVKSKKALILVNKTDLTSQI--DYDRII-EIVGE 356

Query: 350 GLEELINKIKS-------------ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MAS 394
                I+ I+              +   + +     + ++ RH   L + +  L   + +
Sbjct: 357 KKVIKISLIEESGLEEVEEALVEIVYKGETRAKDSLLVTNVRHKNALERALESLTDGVQA 416

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +K   LD +  +++ A  +LG+ITG    E LLD IF  FCIGK
Sbjct: 417 IKQK-MPLDFVEVDVKNAWDALGEITGDTVGEDLLDHIFQNFCIGK 461


>gi|183219714|ref|YP_001837710.1| tRNA modification GTPase TrmE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189909849|ref|YP_001961404.1| tRNA modification GTPase TrmE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|205415774|sp|B0SAE4|MNME_LEPBA RecName: Full=tRNA modification GTPase mnmE
 gi|205415775|sp|B0SJ24|MNME_LEPBP RecName: Full=tRNA modification GTPase mnmE
 gi|167774525|gb|ABZ92826.1| tRNA modification GTPase TrmE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778136|gb|ABZ96434.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 461

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 147/470 (31%), Positives = 241/470 (51%), Gaps = 46/470 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSG----PSCFQVCEFICKKKKPFP-------RKASLRYFF 54
           +TI A+ST   P AI I+R+SG    P    V E   K +KP         +++++   F
Sbjct: 3   DTIAALSTAQGPGAIGILRVSGSLVMPIALAVLE---KNQKPLTETFLQNQKRSAIFCDF 59

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             +G+ LD+ +   FP+P S+TGED AEFH+HG   ++   L  L +    R A  GEF+
Sbjct: 60  VENGKPLDQIVFFYFPAPNSYTGEDLAEFHLHGNPLLLKRALHVLFE-KGARPAQKGEFT 118

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RA+ NGKI+L  AE+++ LI + ++ +  L+ + + GE++ L  +    L  +++  EA
Sbjct: 119 KRAYMNGKINLSGAEAISRLIEARSKYELELAQKNVFGEITKLSSKIRSDLISLKAECEA 178

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++DFS E D+   S +E  N ++ LKN  S  I   +  E       +V+ G  N GKSS
Sbjct: 179 EIDFSTE-DLTFESLEERKNRMVALKNLCSKLIKDSERAESYILQSTVVLYGEPNTGKSS 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  KD +I++D+PGTTRD +  +L L+G  +++ DTAGIR+T D +E+ GI+R+  
Sbjct: 238 LMNLLIGKDRSIISDVPGTTRDYIAEELSLDGIPIRLVDTAGIRDTTDNIEQMGIERSKR 297

Query: 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST--YTEEYDHLISSFTGEGLE 352
           E ++A++ L L       + S P       +  K  L+ +     + D    S+  E + 
Sbjct: 298 EADSANVKLFL------IDTSLPFEKQSFLLKHKDRLFGSLIVANKIDSKHPSWHTESIH 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---------------------HKRHLYHLSQTVRYL- 390
           ++  + +  +S    K    IP                        R  YH+ +    L 
Sbjct: 352 DIQEEFQLTISEISCKTKQGIPELLELLKSKLTSKDDTEDLVLLEDRQRYHIQKIESCLS 411

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E   L E +   +I  + + +A   +G++ G V+ E++L  IFSKFC+GK
Sbjct: 412 EAIQLMENNAPAEIYIQEINVALHEIGQVNGVVENEEILGRIFSKFCVGK 461


>gi|255535209|ref|YP_003095580.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341405|gb|ACU07518.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Flavobacteriaceae
           bacterium 3519-10]
          Length = 462

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 157/469 (33%), Positives = 251/469 (53%), Gaps = 36/469 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDG- 58
           MN++  TI A++T     AI IIR+SG    ++   I + K        ++ Y F  DG 
Sbjct: 1   MNND--TICALATANGIGAIGIIRVSGSDSIRIVNLIFEGKDLEKANSHTVHYGFIKDGD 58

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ ++ VF +P++FT EDS E   HG   +   ILE L K    R+A  GEF+ RAF
Sbjct: 59  ETVDEVMVTVFMAPKTFTTEDSVEISFHGSPFIGKKILEVLIK-NGARMARAGEFTMRAF 117

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AES+ADLI+SE E  R++++  + G +++        L +  S IE +LDF
Sbjct: 118 MNGRIDLSQAESIADLIASENEASRKVALNQLKGGITNEISILRTDLLNFVSLIELELDF 177

Query: 179 SEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +EE DV+ F+ ++ L  +L  ++  + S I   + G  I+NG  + I+G  NAGKS+L N
Sbjct: 178 AEE-DVE-FADRDALVQLLRKIEEKLISLIDSFEYGNAIKNGVGVAIIGKPNAGKSTLLN 235

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL K++ AIV+DI GTTRD +   L ++G   ++ DTAG+RET D +EK G+ +   +V 
Sbjct: 236 ALLKEERAIVSDIAGTTRDTIEEMLHIKGNAFRLIDTAGLRETSDEIEKIGVAKAREKVA 295

Query: 298 NADLILLL---KEINSKKEISFPK-----NIDFIFIGTKSDLYSTYTEEYD--------- 340
            A++++ L    E +  +++   +     ++  I + TK+DL  +  +  +         
Sbjct: 296 TAEILVYLIDSTETDISEDVELIRDLARYDLSLIVLLTKTDLPKSALQSEEIRNSLPVLD 355

Query: 341 ----HLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH---LYHLSQTVRYLE 391
               HLI  S+     L+EL       + +        + +++RH   L H  Q V  + 
Sbjct: 356 FKDFHLIPVSAKQNSNLDELKEAFTGYVDDLNSGENNVVITNQRHFEALQHSLQAVHAVH 415

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A         +++A  LR A   LG+I+G    +++L  IFSKFCIGK
Sbjct: 416 EAV--SSRITTELLAYELRNALEYLGEISGEFTNDEVLGNIFSKFCIGK 462


>gi|194476819|ref|YP_002048998.1| tRNA modification GTPase [Paulinella chromatophora]
 gi|171191826|gb|ACB42788.1| tRNA modification GTPase [Paulinella chromatophora]
          Length = 406

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/404 (31%), Positives = 222/404 (54%), Gaps = 26/404 (6%)

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           ++G  +D+ LL++  +P SFT ED  EF  HGG+  V  +LE L      R A PGEF++
Sbjct: 10  INGERIDEALLLIMKAPRSFTAEDVIEFQCHGGLVCVQRVLE-LVISEGARRALPGEFTQ 68

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RA  +G++D+  AE++++LI + +    +L+M G+ G +      + ++L    + IEA 
Sbjct: 69  RAVLHGRLDITRAEAISELIGARSRRASQLAMVGLGGGVQKSILGFRERLLDQLAEIEAR 128

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF  EE++       +  ++  +  ++   +  G+   I++ G +I ++G  N GKSSL
Sbjct: 129 VDF--EENILPVDECAIKREVQSIVQELIQLVVDGRCSAIVQRGLRIALVGRPNVGKSSL 186

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L++++ AIVTDIPGTTRD++  ++ L G  + + DTAGI+ T+D VEK GI+R+   
Sbjct: 187 LNRLSRRERAIVTDIPGTTRDLIETEIILNGVPITLLDTAGIQVTEDKVEKVGIERSREA 246

Query: 296 VENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342
           + +AD I+L+ ++     ++        P ++  + +G K+D YS  +     L      
Sbjct: 247 IASADAIVLVFDLVEGWTLADAILLKEIPSDVTLLIVGNKADRYSNKSHSPIQLSDPLWA 306

Query: 343 --ISSFTGEG----LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
             +S+ TGEG    L EL+N+     + + +++  ++ + +  L   + ++    + +  
Sbjct: 307 MPVSAMTGEGEASMLTELLNRCG---AGEIQEINLALNARQCDLASSAASILEQGLQTF- 362

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E    +D    +LR A   LG+ITG    E  LD IFS+FCIGK
Sbjct: 363 EDGLPIDFFTIDLRQAIKFLGQITGDDISESTLDRIFSRFCIGK 406


>gi|188994926|ref|YP_001929178.1| tRNA modification GTPase TrmE [Porphyromonas gingivalis ATCC 33277]
 gi|188594606|dbj|BAG33581.1| tRNA modification GTPase [Porphyromonas gingivalis ATCC 33277]
          Length = 518

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 151/469 (32%), Positives = 243/469 (51%), Gaps = 36/469 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKK-----KPFPRKASLRYFFGLD 57
           K+TI AV+T      I++IR+SG + F++    F+ + K     +  PR A        D
Sbjct: 53  KDTICAVATAPGVGGIAVIRVSGANAFRLVSPLFLHRGKAIDLSEAKPRTALYGEIMEAD 112

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ +L  F +P SFT E + E   HG I +   ILE L      RLA PGEF+RRA
Sbjct: 113 -ELIDEVVLTCFHAPHSFTAEHTVEIACHGSIYIRRRILEALINQ-GCRLAQPGEFTRRA 170

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           + NG++DL  AE++AD+I+SE++ Q +++M+ + G  S       ++L  +   +E +LD
Sbjct: 171 YLNGRMDLSSAEAVADIIASESKAQHQMAMKQLRGGYSEELNALREELLRLTGLMELELD 230

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EE DV+     E+L     ++  +   I   +LG  ++ G  + I+G +N GKS+L N
Sbjct: 231 FPEE-DVEFADRTELLALCDQIELKLKKLIDSYRLGNAVKRGIPVAIVGTTNVGKSTLLN 289

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ AIV+DI GTTRD +   + + GYL +  DTAG+RET+D +E  GI+R+  +++
Sbjct: 290 TLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTAGLRETEDTIESLGIERSRSKIK 349

Query: 298 NADLILLL---KEINSKKEISFPKNI-------DFIFIGTKSDLYSTY------------ 335
            AD+IL +     I+   ++ + K+I         I +  KS+  +              
Sbjct: 350 EADIILAVVDGTRISEANQLDYIKSIWDEREERTVILLVNKSESLAEADRIGLSEALQTK 409

Query: 336 --TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EM 392
             T      IS+  G G++EL  ++  I+          I S+ RH   L +    L  M
Sbjct: 410 LSTPTRPIFISAREGRGIDELKGELTQIMETSGANEADLIVSNARHHQLLREAFDALRRM 469

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
            S  +     D++  +LR A  S+G+ITG  +  +  L  IF+ FCIGK
Sbjct: 470 RSGFDMGLSTDLLTLDLRHAITSIGEITGREITSDDTLHYIFAHFCIGK 518


>gi|291526551|emb|CBK92138.1| tRNA modification GTPase trmE [Eubacterium rectale DSM 17629]
          Length = 458

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 249/462 (53%), Gaps = 30/462 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-----RKASLRYFFGLDG 58
           + +TI A++T   PS I IIR+SG     V + I K K         +  ++ Y F  DG
Sbjct: 2   QNDTIAAIATAMSPSGIGIIRISGDDALSVIDRIYKSKNNKKKISACQSHTIHYGFIYDG 61

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ ++++  +P ++T ED+ E   HGG+ V+  +LE + K    R A PGEF++RA
Sbjct: 62  DEKIDEVMVLLMKAPNTYTREDTVEIDCHGGVYVMKRVLEAVIK-NGARPAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D+I+S+ +   + S+  + G +     Q  ++L H  +FIE+ LD
Sbjct: 121 FLNGRIDLSQAESVIDVINSKNDFALKSSLSQLGGAVLGSIRQIREQLLHEIAFIESALD 180

Query: 178 FSEEEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
             E   +  +  K   + D  +++  I   +     G I++ G   VI+G  NAGKSSL 
Sbjct: 181 DPEHISLDGYPQKLRAIVDNEYVE--IDGLLKTSDNGRILKEGINTVIIGKPNAGKSSLL 238

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L   + AIVTDI GTTRDVL   +++ G  + + DTAGIR T+D+VEK G+K+     
Sbjct: 239 NVLVGSERAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDVVEKIGVKKAMEHA 298

Query: 297 ENADLIL------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLISS 345
           + ADLI+      ++ + N    I+F K+   + +  KSDL S  + +      D  + S
Sbjct: 299 DEADLIIYVVDSSVVLDDNDYDIINFIKDKKAVILLNKSDLASKVSADDIKKLVDKTVIS 358

Query: 346 FTGE---GLEELINKIKSILSN---KFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            + +   G++ L + IK +  +    F  ++  +   HK+ L    ++++ L M S+++ 
Sbjct: 359 VSAKESSGIDGLSDTIKEMFFDGQVSFNDEIYITNIRHKKLLSDAKESLK-LVMNSIDD- 416

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D   D  + +L  A  SLG I G    + L+D IFSKFC+GK
Sbjct: 417 DMPEDFYSIDLMSAYESLGLIIGESVEDDLMDEIFSKFCMGK 458


>gi|242079095|ref|XP_002444316.1| hypothetical protein SORBIDRAFT_07g020060 [Sorghum bicolor]
 gi|241940666|gb|EES13811.1| hypothetical protein SORBIDRAFT_07g020060 [Sorghum bicolor]
          Length = 548

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 150/481 (31%), Positives = 244/481 (50%), Gaps = 60/481 (12%)

Query: 7   TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKK------KKPF-PRKASLRYFFGLD 57
           TI A+ T  G  P+A+ I+RLSGP    V + + +         P+ PR   + Y   LD
Sbjct: 81  TIAAIVTSLGGGPAAVGIVRLSGPDAVAVADRVFRPAGARRASAPWQPRSHFVEYGLALD 140

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G ++D+ L++   +P S+T ED  E   HG    +  +L    +    RLA+PGEF+ 
Sbjct: 141 ADGSVIDEVLVVPMLAPRSYTREDVVELQCHGNDLCLRRVLRACLEA-GARLADPGEFTL 199

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE+++ LIS+++      ++ G+ G  S+L      +   + + IEA 
Sbjct: 200 RAFLNGRLDLAQAENVSRLISAKSAAVADSALAGIQGGFSTLVRSLRSRCIELLTEIEAR 259

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF  E+++       +++ I  ++ ++   +      +++++G +I I+G  N GKSSL
Sbjct: 260 LDF--EDEMPPLDLVMLVSKINCMRQEVQDALDTSNYDKLLQSGLQIAIIGRPNVGKSSL 317

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NA +K + AIVT+I GTTRDV+  ++ + G  V + DTAGIRETDD+VEK G+KR+   
Sbjct: 318 LNAWSKSERAIVTEIAGTTRDVVEANVSIHGVPVTLLDTAGIRETDDVVEKIGVKRSEAA 377

Query: 296 VENADLILL--------------LKE---INSKKEISFPKNIDFIFIGTKSDLYS-TYTE 337
              ADLI++              L E   IN K   S    +  + +  K D       E
Sbjct: 378 AMGADLIVMAISAVDGWTDDDTKLMEHVLINRKSSGS---AVPMVLVINKVDCAPFVPGE 434

Query: 338 EYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL----YHLS 384
           +++     F         TG+G+ +L + +  +   +       +PS  R          
Sbjct: 435 QFEQFSGLFIKHVQTCAVTGKGISDLESAVIEVRGIEH------VPSEGRRWTVNQRQFE 488

Query: 385 QTVRYLEM-----ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439
           Q +R  E      +S+NE+   +D    +LR A+++L  I+G    E++L  IFSKFCIG
Sbjct: 489 QLLRTKEAFLRLESSINEQ-LPMDFWTVDLREAALALATISGEDISEEVLSSIFSKFCIG 547

Query: 440 K 440
           K
Sbjct: 548 K 548


>gi|239993743|ref|ZP_04714267.1| tRNA modification GTPase [Alteromonas macleodii ATCC 27126]
          Length = 367

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 196/365 (53%), Gaps = 36/365 (9%)

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
           + RLANPGEFS +AF N K+DL +AE++ADLI + ++   + ++  + GE S+      D
Sbjct: 11  DARLANPGEFSEQAFLNDKLDLAQAEAIADLIDASSKQAAKSALRSLQGEFSTQIQTLSD 70

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
           ++ H+R ++EA +DF EEE +   S  +V  D+  +   ++    Q K G ++R G ++V
Sbjct: 71  QIVHLRMYVEAAIDFPEEE-IDFLSDGKVSGDLSAIMQSLTKVREQAKQGTLLREGMQVV 129

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I G  NAGKSSL NALA +D AIVTDI GTTRDVL   + ++G  V I DTAG+RE+ D 
Sbjct: 130 IAGRPNAGKSSLLNALAGRDSAIVTDIAGTTRDVLKEHIHIDGMPVHIIDTAGLRESPDK 189

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL- 331
           VE+ GI+R +  +  AD +L + +  +   I             P+ I    +  K+DL 
Sbjct: 190 VEQIGIERAWQAINEADHVLFVVDSTATAVIDPYEIWPEFMARLPQGIPVTVVRNKADLS 249

Query: 332 -----YSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS------H 376
                 ST   E   +    +S+  G G    ++ +K+ L+   K + F   +       
Sbjct: 250 TLDIGQSTVATEQGDISVINLSAKEGSG----VDTLKAHLA---KTMGFDTTTEGQFIAR 302

Query: 377 KRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435
           +RH+  L Q   Y+        D    +++AE LRLA  +L +ITG    + LL  IFS 
Sbjct: 303 RRHIDALDQAYSYVSTGEQQLHDAMAGELLAEELRLAHQALCEITGEFTSDDLLGKIFSS 362

Query: 436 FCIGK 440
           FCIGK
Sbjct: 363 FCIGK 367


>gi|194467398|ref|ZP_03073385.1| tRNA modification GTPase TrmE [Lactobacillus reuteri 100-23]
 gi|194454434|gb|EDX43331.1| tRNA modification GTPase TrmE [Lactobacillus reuteri 100-23]
          Length = 462

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 147/465 (31%), Positives = 251/465 (53%), Gaps = 31/465 (6%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD-- 57
           N E +TI A+ST      ISIIR+SG    +V + I K K    + A+    +G  +D  
Sbjct: 3   NSENDTIAAISTPVGEGGISIIRISGDDAVKVAQRIYKGKN-LAKVATHTINYGHIVDPD 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ ++ V  +P ++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 62  TDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQ-LVLSFGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL ++E++ DLI ++T+   ++++  + G+LS L       +  + + +E ++
Sbjct: 121 AFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  ++K +      ++  I   +   K G+++R+G    I+G  N GKSSL 
Sbjct: 181 DYPEYDAVEEMTTKLLKEKAEDIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  +D AIVT++ GTTRDV+   +++ G  +K+ DTAGIR+T+D VEK G++R+   +
Sbjct: 241 NSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVERSRKAL 300

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDHL----- 342
             ADL+LLL  I+S  E++          K+   I I  K+DL       E   L     
Sbjct: 301 GAADLVLLL--IDSSNELTEEDYQLLEATKDKQRIIILNKTDLPRKVDLAELKSLAGKSA 358

Query: 343 ---ISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLE--MASL 395
               S    EG+++L  +I  +  N+         + ++ RH+  L Q    L   +  +
Sbjct: 359 VIETSIVNHEGMDQLGEQIGYMFFNEGIESNQNNVMVTNARHIGLLHQANDALSDVLKGI 418

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           N+    +D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 419 NDG-MPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 462


>gi|46579492|ref|YP_010300.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81830466|sp|Q72D51|MNME_DESVH RecName: Full=tRNA modification GTPase mnmE
 gi|46448906|gb|AAS95559.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233307|gb|ADP86161.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris RCH1]
          Length = 457

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 132/398 (33%), Positives = 209/398 (52%), Gaps = 22/398 (5%)

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD  L +  P P +FTGED +E H HGG  V+  +LE   +    R A  GEF+RRAF N
Sbjct: 64  LDDVLAVHMPGPRTFTGEDVSEIHCHGGSGVLAAVLEACVRH-GARYAERGEFTRRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++A++I++ +    RL+   + G L    G    +L  +R  +   +DF E
Sbjct: 123 GRMDLTQAEAVAEMIAAPSREGMRLAQAKLDGLLGQRVGALRARLDALRMQLCVAVDFPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE V+  + +  L +I  ++  +    +        ++G  +V+ G  NAGKSSL NAL 
Sbjct: 183 EE-VECLAPEAFLAEIEAVRQGVVELSAGYARTRCWQDGALVVLAGQVNAGKSSLMNALL 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +  AIVTD+PGTTRD +   L+L G  ++++DTAG+RET DIVE+EG++ +   V  AD
Sbjct: 242 GRRRAIVTDLPGTTRDFIEEPLNLSGLAIRLADTAGLRETGDIVEQEGVRMSRDLVAQAD 301

Query: 301 LILLLKEIN---SKKEISF-----PKNIDFIFIGTKSDLY------STYTEEYDHLISSF 346
           L+LL+ +        E+       P+ +  +F   K+DL       ST        +++ 
Sbjct: 302 LVLLVTDATQGLQGPELELLRHAGPERVLVVF--NKTDLLEGRILPSTPEGCRSVHVAAA 359

Query: 347 TGEGLEELINKIK-SILSNKFKKLPFS--IPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
           +G+G+E L+  I+ ++L+      P +  +  + R    L +    L E+A         
Sbjct: 360 SGDGVESLVTAIRAAVLAATGAGEPEAGELAPNMRQAAALDKAATILDELAGDIRAHVPY 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+    L  A  +L  +TG    E +LD IF+ FCIGK
Sbjct: 420 DLCGVRLDGACAALMDVTGQSTPEAILDAIFASFCIGK 457


>gi|290953967|ref|ZP_06558588.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312644|ref|ZP_06803394.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 379

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 127/349 (36%), Positives = 200/349 (57%), Gaps = 30/349 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + K+TI A++T      I IIR+SG    ++ E + KK+   PR A+    +  D  I+D
Sbjct: 2   YTKDTIVAIATPQGNGGIGIIRISGIDALEIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GEF+ RAF N K
Sbjct: 60  HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++EA +DF EEE
Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178

Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
                D +  SS +E+   IL +KN         K G I+  G  ++++G  NAGKSSL 
Sbjct: 179 INFLEDQKIHSSLEEIYKVILAIKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR   ++
Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291

Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDL 331
           + AD +L + +  +  ++ F              PK+ID  ++  K DL
Sbjct: 292 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDL 340


>gi|46577356|sp|Q7MVZ2|MNME_PORGI RecName: Full=tRNA modification GTPase mnmE
          Length = 474

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 151/474 (31%), Positives = 239/474 (50%), Gaps = 46/474 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKK-----PFPRKASLRYFFGLD 57
           K+TI AV+T      I++IR+SG   F++    F+ + K        PR A        D
Sbjct: 9   KDTICAVATAPGVGGIAVIRVSGADAFRLVSPLFLYRGKAIDLSGAKPRTALYGEIMEAD 68

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ +L  F  P SFT E + E   HG I +   ILE L      RLA PGEF+RRA
Sbjct: 69  -ELIDEVILTCFHGPHSFTAEHTVEIACHGSIYIRRRILEALINQ-GCRLAQPGEFTRRA 126

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           + NG++DL  AE++AD+I+SE++ Q +++M+ + G  S       ++L  +   +E +LD
Sbjct: 127 YLNGRMDLSSAEAVADIIASESKAQHQMAMKQLRGGYSEELNALREELLRLTGLMELELD 186

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EE DV+     E+L     ++  +   I   +LG  ++ G  + I+G +N GKS+L N
Sbjct: 187 FPEE-DVEFADRTELLALCDQIELKLKKLIDSYRLGNAVKRGIPVAIVGTTNVGKSTLLN 245

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ AIV+DI GTTRD +   + + GYL +  DTAG+RET+D +E  GI+R+  +++
Sbjct: 246 TLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTAGLRETEDTIESLGIERSRSKIK 305

Query: 298 NADLILLL---KEINSKKEISFPKNI-------DFIFIGTKSDLYSTY------------ 335
            AD+IL +     I+   ++ + K+I         I +  KS+  +              
Sbjct: 306 EADIILAVVDGTRISEANQLDYIKSIWDEREERTLILLVNKSESLAEADRIGLSETLQTK 365

Query: 336 --TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
             T      IS+  G G++EL  ++  I+          I S+ RH   L +    L   
Sbjct: 366 LSTPTKPIFISAREGRGIDELKGELTQIMETSGANEADLIVSNARHHQLLREAFDALRRM 425

Query: 394 SLNEKDCGLDI------IAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
            L     G D+      +  +LR A  S+G+ITG  +  +  L  IF+ FCIGK
Sbjct: 426 RL-----GFDMGLSTDLLTLDLRHAITSIGEITGREITSDDTLHYIFAHFCIGK 474


>gi|291543431|emb|CBL16540.1| tRNA modification GTPase TrmE [Ruminococcus sp. 18P13]
          Length = 454

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 148/465 (31%), Positives = 236/465 (50%), Gaps = 44/465 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----DGRI 60
           TI A+ST      I++IR+SGP    V    F     KP    A     +G     DG  
Sbjct: 3   TIAAISTPNAVGGIAVIRVSGPDALTVAARVFTPANGKPVSGMAGYTCAYGTVLDQDGNP 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +L VF +P S+TGED+AE   HGG+ +   +L  L        A PGEF++RAF  
Sbjct: 63  VDDVVLTVFRAPHSYTGEDTAELSCHGGLFLSRQVLR-LCFAAGAEPAQPGEFTKRAFLA 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+ L +AES+ DLIS++ + Q R +     G +        D+L  + S + A +D+ E
Sbjct: 122 GKLSLTQAESVMDLISAQGDAQLRCARSLREGAVFRRIHSCTDQLVVLLSDLAAWVDYPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+ +     +   +  L  D+S+  S    G I+R G   VI+G  N GKS+L N L+
Sbjct: 182 E-DIPSVEPDALDASLTALHADLSAIASTYDYGRILREGINTVIVGRPNVGKSTLMNRLS 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + +IVTDI GTTRDV+   + L    +++SDTAG+R+T D +E+ G++  +  +E A+
Sbjct: 241 GFERSIVTDIAGTTRDVVEESVRLGDLTLRLSDTAGLRDTPDRIEQLGVEIAYRRLEEAE 300

Query: 301 LILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEE-------YDHLISSFT 347
           LIL + +  +      ++ IS       + I  KSD  S+ T +       Y   IS+ T
Sbjct: 301 LILAVFDSTAPLLPQDRELISRIGKRRAVAICNKSDAGSSLTPDELSAHFAYVIPISAKT 360

Query: 348 GEGLEELINKIKS------------ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
           GEG+E+L + + +            +LSN+ +KL       +R + H+S  +  +     
Sbjct: 361 GEGMEQLSSALHALFLSDAPDPQAGVLSNERQKLCV-----ERAMEHISAAIAAVRSGE- 414

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 LD +   L  A+ +L ++TG    E +++ +F++FC+GK
Sbjct: 415 -----PLDCVTVLLDDAANTLLELTGERATEAVVEQVFARFCVGK 454


>gi|156742840|ref|YP_001432969.1| tRNA modification GTPase TrmE [Roseiflexus castenholzii DSM 13941]
 gi|205415804|sp|A7NN19|MNME_ROSCS RecName: Full=tRNA modification GTPase mnmE
 gi|156234168|gb|ABU58951.1| tRNA modification GTPase TrmE [Roseiflexus castenholzii DSM 13941]
          Length = 464

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 151/469 (32%), Positives = 237/469 (50%), Gaps = 43/469 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR--ILD 62
           +TI A++T      I I+R+SG     + E I    +P   K   +RY   +DG    +D
Sbjct: 5   DTIAAIATPPGEGGIGIVRISGKDALSILERIFVPVRPGRWKPYRMRYGHVVDGAGVRVD 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L +    P SFT ED+ E  VHGG  VV  +L++       R ANPGEF+ RAF NG+
Sbjct: 65  EALAVFMRGPRSFTAEDTVEISVHGGPLVVERVLQQALAA-GARAANPGEFTMRAFLNGR 123

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDF 178
           IDL +AE+  D+I++ T     L+   + G    EL  +    ID L +  + ++   D 
Sbjct: 124 IDLTQAEATLDIITARTTTALALAEAQLGGWLSHELRRIRALLIDPLAYCTALVDFPEDE 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+   +  V          + + ++  + G I R G +  ++G  NAGKSSL NA
Sbjct: 184 VEPQDVETPLTAAV--------QALDTLVATAEQGIIYRQGARATLVGRPNAGKSSLLNA 235

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + D AIVT IPGTTRD L    +L G  V ++DTAGI E+ D VE+ G++R+   V  
Sbjct: 236 LLRIDRAIVTPIPGTTRDTLEETANLGGVPVVLTDTAGIVESVDPVERLGVERSRQAVAQ 295

Query: 299 ADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSDLY--STYTEE--------YDHL 342
           ADL+LL+ E     ++  +EI +  ++   + I  K DL   +   +E        Y++L
Sbjct: 296 ADLLLLVVEGVSQPVDDDREIVALTRDKRTVLIVNKIDLIDGADAVQECMKFLKCAYENL 355

Query: 343 ----------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
                     +S+ TG+GL+ L   +  +L          + ++ RH   L++   +   
Sbjct: 356 RGVPFDATIAVSALTGQGLDMLGATVARLLLGDSSPADGRLVTNVRHRDALARAATHARD 415

Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +  +    D++A +L  A  ++G++TG    + LL  IFS+FCIGK
Sbjct: 416 ALDSFRRGVSPDLLAVDLTAAINAIGEVTGEAVGDDLLHAIFSRFCIGK 464


>gi|14195296|sp|Q9RL97|MNME_STRAG RecName: Full=tRNA modification GTPase mnmE
 gi|6448626|emb|CAB61255.1| thiophene degradation protein F [Streptococcus agalactiae]
          Length = 462

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 150/468 (32%), Positives = 256/468 (54%), Gaps = 36/468 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGL 56
           +  E +TI A+ST     AI I+R+SG    ++   I +    K     +  +L Y   +
Sbjct: 3   ITKEFDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGLRGKDLSAIQSHTLNYGHIV 62

Query: 57  D---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE-LAKMPNLRLANPGE 112
           D     ILD+ +L V  +P++FT ED  E + HGGIAV N IL+  LA M +   A PGE
Sbjct: 63  DPDKNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILATMDHN--AEPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQR-RLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           F++RAF NG++DL +AE++ DLI ++T  Q   +S++ + G L +L      ++ +  + 
Sbjct: 121 FTKRAFLNGRVDLTQAEAVMDLIRAKTIKQWIYVSLKQLDGSLKTLINNTRQEILNTLAQ 180

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           +E ++D+ E +DV+  ++  +       +  + + +   + G+I+R G     +G  N G
Sbjct: 181 VEVNIDYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAKIGRPNVG 240

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KS L N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDDIVEK G++R
Sbjct: 241 KSQLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVER 300

Query: 292 TFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYSTYTEEYDHL- 342
           +   +E ADL+LL+  +NS + ++          K  + I +  K+DL      E + L 
Sbjct: 301 SKKALEEADLVLLV--LNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKI--EVNELP 356

Query: 343 -----ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASL 395
                IS    E ++++  +I  I  +    +       S+ RH+  + + V  L+  ++
Sbjct: 357 ENVIPISVLENENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLK--AV 414

Query: 396 NEK-DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           NE  + G+  D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 415 NEGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 462


>gi|326335516|ref|ZP_08201703.1| thiophene and furan oxidation protein ThdF [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692282|gb|EGD34234.1| thiophene and furan oxidation protein ThdF [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 475

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 160/483 (33%), Positives = 257/483 (53%), Gaps = 51/483 (10%)

Query: 1   MNHEK-----ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYF 53
           MNHEK     +TI A++T     AI+IIRLSG     + + + K    K      S    
Sbjct: 1   MNHEKIPYTNDTIVALATATGVGAIAIIRLSGKEAIALADKVFKTLSGKTLSEAPSHTVH 60

Query: 54  FGL---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANP 110
            G    + +++D+ L  +F   +S+TGE   EF  HG   ++  +++ L      RLA  
Sbjct: 61  LGTIKNENQVIDECLATIFKGKKSYTGEPVVEFSCHGSPYIIQEVIK-LCLTNGARLAQA 119

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           GEF++RAF N K+ L +AE++ADLI+S+++   +++++ M G  +S       +L +  S
Sbjct: 120 GEFTKRAFLNRKLALNQAEAVADLIASDSKASHQVALQQMRGGFTSKIEGLRQELLNFAS 179

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSN 229
            IE +LDFSEE DV  F+ +E L  +L     I   + Q    G  I+NG  + I+G  N
Sbjct: 180 LIELELDFSEE-DVA-FADREQLEQLLQRIRTILQRLVQSFSAGNAIKNGIPVAIVGKPN 237

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
           AGKS+L N L  ++ AIV+DI GTTRD +   L ++G   +  DTAGIR+T D +E  G+
Sbjct: 238 AGKSTLLNTLLNEERAIVSDIAGTTRDTIEETLHIDGITFRFIDTAGIRDTQDKIEAIGV 297

Query: 290 KRTFLEVENADLILLL--KEINSKKEI------SFPKNIDFIFIGTKSDL----YSTYTE 337
           ++   +++ A ++L L  ++ N+  E+      ++ K +  + +  K+D      S + E
Sbjct: 298 EKAKEKIKKAQIVLYLYNEKENTTDEVVQFVQENYRKGLKILLLHNKTDSEYIGLSDFDE 357

Query: 338 EYDHLISSFT---GEG-----LEELIN--KIKSILSNKFKKLP----FSIPSHKRHLYHL 383
           E +  ++S     G G      +E IN   +K ILS+  K+L      +I ++ RHL  L
Sbjct: 358 EIEEKLNSKERKYGYGQLRISAKEKINIEALKEILSSYAKELTTTESATIITNIRHLEAL 417

Query: 384 SQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437
            QT     + +L+  + GL      D++A ++R     LG ITG V  +++L  IFS+FC
Sbjct: 418 QQT-----LVALDRVEEGLATQLSGDLLAIDIREMLYHLGSITGAVSNDEVLGNIFSRFC 472

Query: 438 IGK 440
           IGK
Sbjct: 473 IGK 475


>gi|94266686|ref|ZP_01290361.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [delta proteobacterium MLMS-1]
 gi|93452674|gb|EAT03231.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [delta proteobacterium MLMS-1]
          Length = 500

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 151/496 (30%), Positives = 253/496 (51%), Gaps = 62/496 (12%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-------LRYFF-- 54
           +++TI A++T      I IIR+SG    +V + + +  +P PR+ S       LRY +  
Sbjct: 8   DQQTIAAIATPPGAGGIGIIRISGARAAEVLQQLFRPARP-PREPSAHLPSHRLRYGWIS 66

Query: 55  -GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
               GR+LD+ + +   +P ++T ED  E H HGG  V+  IL  +  +  +R A PGEF
Sbjct: 67  EPASGRLLDEVMAVYMAAPATYTREDVVEIHGHGGHLVLREILALILTIKGVRAAEPGEF 126

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG+IDL  AE++ +L+++ET     L+++ ++G L          L  + + +E
Sbjct: 127 TKRAFLNGRIDLTRAEAVIELLNAETRQGVELAIQQLAGGLQQRVEAVRQALLAMLAVVE 186

Query: 174 ADLDFSEEED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
             +DF +E+D  V +   ++ L   + +   +   +SQ + G I R G  + ILG  N G
Sbjct: 187 VAIDFPDEDDEIVDHAGLQQQLA--VAVVAPLEQLLSQRRRGRIYREGAAVAILGRPNVG 244

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NAL +++ AIVT +PGTTRD +   +++ G  V++ DTAGIR+T + VE+ GI+R
Sbjct: 245 KSSLLNALLREERAIVTPVPGTTRDTIEESIEVNGVPVRLIDTAGIRDTPESVEEIGIER 304

Query: 292 TFLEVENADLILLLKEINS---KKEISFPKNI---DFIFIGTKSDL-------------- 331
           +      ADL+LLL +  S    ++++  +++   + + +  K DL              
Sbjct: 305 SRRHGREADLVLLLVDATSGLVPEDLTLYQSLAGQNLVLVVNKLDLPGPDGQPPKKGDTI 364

Query: 332 --YSTYTEEYDHL-----------------------ISSFTGEGLEELINKIKSILSNKF 366
             + T  E+ +                         IS+ TG+GLEEL   I + L+   
Sbjct: 365 PIFHTRREKRETPAMKNRYGVPLFWRQRFADQPLVGISARTGQGLEELTEAIFTALTGGR 424

Query: 367 KKLP--FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
            + P    +P+ +      +  V      +  +     +++A  L+ A  +LG+I G   
Sbjct: 425 HRDPEHACVPNARHEAALQAALVAARRTTTTLQSGGAPELLAVELQGALAALGEIVGETS 484

Query: 425 VEQLLDIIFSKFCIGK 440
            E+LLD IFS+FCIGK
Sbjct: 485 GEELLDAIFSRFCIGK 500


>gi|222823559|ref|YP_002575133.1| tRNA modification GTPase, TrmE [Campylobacter lari RM2100]
 gi|222538781|gb|ACM63882.1| tRNA modification GTPase, TrmE [Campylobacter lari RM2100]
          Length = 442

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 155/455 (34%), Positives = 240/455 (52%), Gaps = 35/455 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISIIR+SG    +      +K+K  PR A L   +  +   LD+ L
Sbjct: 3   DTIAAIATAHGVGSISIIRVSGDQALEFALKFTRKEKLTPRYAHLCKIYKNNDDFLDEAL 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF +HGG ++   +L+EL  +   RLANPGEFS+RA  NGK+DL
Sbjct: 63  VIYFKAPYSFTGEDIVEFQLHGGFSLSEILLDELV-LAGARLANPGEFSKRACLNGKMDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           L+A S+ D I S++     +  + + G+LS         L    +F+E  +D+++++  Q
Sbjct: 122 LKALSIQDAIMSKSACAANIIAKNIKGDLSKFLNTIRIDLVQTLAFVETSIDYADDDLPQ 181

Query: 186 NF---------SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +           + ++L DI+         IS  K G I   G+K+ I+G  NAGKSSL 
Sbjct: 182 DLLDQIITMCEKNSKLLRDIV--------DISLSKKGLI--EGFKVAIIGKPNAGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L   D AIV+DI GTTRD +   L +  +L+KI DTAGIR  DD +EK G+  ++  +
Sbjct: 232 NSLLAFDRAIVSDIAGTTRDRIEESLKIGSHLIKIIDTAGIRNADDEIEKIGVHLSYESI 291

Query: 297 ENADLILLL----KEINSKKE--ISFPKNID--FIFIGTKSDLYSTYTEEYDHLIS-SFT 347
           + AD+I+++    KE   + E  +   K+ D   I++  KSDL    T +++H IS S  
Sbjct: 292 KEADIIIVVFDGSKEFEEEDERILQALKDCDKKIIYVLNKSDL----TTKFEHEISTSCI 347

Query: 348 GEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
               +E    IK  L+     L     + S+   L         +  A    K+  L++ 
Sbjct: 348 RICAQENTQAIKENLNEYLNTLDGDGMLISNTLILNACKNASEAILRARDLLKESSLELF 407

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  L LA   + + T   + +++LD +FS FC+GK
Sbjct: 408 AFELNLAIGEIAQFTKDFERDEILDAMFSNFCLGK 442


>gi|309791157|ref|ZP_07685689.1| tRNA modification GTPase TrmE [Oscillochloris trichoides DG6]
 gi|308226719|gb|EFO80415.1| tRNA modification GTPase TrmE [Oscillochloris trichoides DG6]
          Length = 456

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 151/464 (32%), Positives = 232/464 (50%), Gaps = 40/464 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD--GRILD 62
           +TI A++T      I ++RLSGP  + + + + +   P P R   LRY + +D  G  +D
Sbjct: 4   DTIAAIATPPGEGGIGVVRLSGPQAYTIAQAVFRPLHPGPLRPHRLRYGYVVDASGAPID 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L     +P SFT ED  E   HGG   V   L  +      RLA PGEF+ RAF NG+
Sbjct: 64  EALCTYMRAPRSFTREDVVEISCHGGALPVQMTLARVLAA-GARLARPGEFTLRAFLNGR 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDF 178
           IDL +AE+  D+I ++T     L+   + G    E+  L  Q ++ L ++ + I    DF
Sbjct: 123 IDLTQAEATLDVIRAQTTAGLALAQAQLGGWLAQEVRDLRAQLLEPLAYLTALI----DF 178

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E+E       +E L  +      +   ++    G + R G +  ++G  N GKSSL NA
Sbjct: 179 PEDE----VPHQEYLPALQTSLEGVERLLAGAAQGIVYRQGARAALVGRPNVGKSSLLNA 234

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +   AIVT IPGTTRD L    +L+G  V + DTAGIRE+ D VE+ G++R+   +  
Sbjct: 235 LLRVQRAIVTPIPGTTRDTLEETANLDGIPVVLIDTAGIRESHDPVEQLGVERSRQALAG 294

Query: 299 ADLILLLKEINSKK--------EISFPKNIDFIF----IGTKSDLYSTYTEEYDHLI--- 343
           ADL LL+ +             E+++ K    I+    +    DL +    E+ HL+   
Sbjct: 295 ADLALLVLDATVPPGPADRVIAELTYDKPTILIWNKQDVVHNPDLVAPSPFEHPHLLGVV 354

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLP-----FSIPSHKRHLYHLSQTVRYLEMASLN 396
             ++ TG G++ L + I   L              S P H+  L   +  +R + +AS  
Sbjct: 355 ATTATTGAGIDTLSHSISRALLGGAPLGAGAAHLVSSPRHRDALQRAADHLRAV-LASCA 413

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +    +D++A +L +A  +LG+ITG    E LLD IF++FCIGK
Sbjct: 414 QG-VTVDLVAGDLTVALNALGEITGEAVGEDLLDTIFTRFCIGK 456


>gi|225386360|ref|ZP_03756124.1| hypothetical protein CLOSTASPAR_00104 [Clostridium asparagiforme
           DSM 15981]
 gi|225047542|gb|EEG57788.1| hypothetical protein CLOSTASPAR_00104 [Clostridium asparagiforme
           DSM 15981]
          Length = 470

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 152/466 (32%), Positives = 242/466 (51%), Gaps = 35/466 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLDG- 58
           +TI A++TG   S I I+R+SG   F V + I + K   P      R  ++ Y F  DG 
Sbjct: 9   DTIAAIATGMSNSGIGIVRISGGEAFAVIDRIFRNKAGKPVKLSQERSHTVHYGFIYDGD 68

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+I+   P SFT ED+ E   HGG+ +V  ILE + +    R A PGEF++RAF
Sbjct: 69  ERVDEALVILMRGPRSFTAEDTVEIDCHGGVLMVKKILETVIRY-GARTAEPGEFTKRAF 127

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++AD+I+++ +   R S+  + G +S    +    + +  +FIE+ LD 
Sbjct: 128 LNGRIDLSQAEAVADVINAKNDYALRNSVGQLGGSVSKKIKELRAGILYQIAFIESALDD 187

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E   +  F+ + +  +I  +   +   I     G ++  G + VILG  NAGKSSL N 
Sbjct: 188 PEHISLDGFA-QSLRAEIEEMTEQVEKLIRSADDGRVMTEGVRTVILGKPNAGKSSLMNV 246

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVT+I GTTRD L   + L+G  + + DTAGIR+T+D+VEK G+ R       
Sbjct: 247 LIGEDRAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDVVEKIGVDRAMKAARE 306

Query: 299 ADLILLLKEINSKKEISFPKNIDF------------IFIGTKSDLYS-----TYTEEYDH 341
           ADL++ + + ++  + +  + +DF            I +  K+DL +         E   
Sbjct: 307 ADLLIYVVDGSTPLDENDREIMDFIRSNSGEGGKKAIVLLNKTDLETCVDAGVLERETGC 366

Query: 342 L---ISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASL 395
           +   IS+   +G+E L  +IK +  +    L F+     +  RH   L +    LEM   
Sbjct: 367 VVIPISAKEEQGIEALEQEIKQMFYH--GTLSFNDEVYITSVRHKEALGRARESLEMVKC 424

Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + E+    D  + +L  A   LG I G    + +++ IF+KFC+GK
Sbjct: 425 SVEQGLPEDFYSIDLMDAYEQLGLIIGEAVDDDVVNEIFAKFCMGK 470


>gi|34540645|ref|NP_905124.1| tRNA modification GTPase TrmE [Porphyromonas gingivalis W83]
 gi|34396959|gb|AAQ66023.1| thiophene and furan oxidation protein ThdF [Porphyromonas
           gingivalis W83]
          Length = 518

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 151/474 (31%), Positives = 239/474 (50%), Gaps = 46/474 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKK-----PFPRKASLRYFFGLD 57
           K+TI AV+T      I++IR+SG   F++    F+ + K        PR A        D
Sbjct: 53  KDTICAVATAPGVGGIAVIRVSGADAFRLVSPLFLYRGKAIDLSGAKPRTALYGEIMEAD 112

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ +L  F  P SFT E + E   HG I +   ILE L      RLA PGEF+RRA
Sbjct: 113 -ELIDEVILTCFHGPHSFTAEHTVEIACHGSIYIRRRILEALINQ-GCRLAQPGEFTRRA 170

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           + NG++DL  AE++AD+I+SE++ Q +++M+ + G  S       ++L  +   +E +LD
Sbjct: 171 YLNGRMDLSSAEAVADIIASESKAQHQMAMKQLRGGYSEELNALREELLRLTGLMELELD 230

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EE DV+     E+L     ++  +   I   +LG  ++ G  + I+G +N GKS+L N
Sbjct: 231 FPEE-DVEFADRTELLALCDQIELKLKKLIDSYRLGNAVKRGIPVAIVGTTNVGKSTLLN 289

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ AIV+DI GTTRD +   + + GYL +  DTAG+RET+D +E  GI+R+  +++
Sbjct: 290 TLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTAGLRETEDTIESLGIERSRSKIK 349

Query: 298 NADLILLL---KEINSKKEISFPKNI-------DFIFIGTKSDLYSTY------------ 335
            AD+IL +     I+   ++ + K+I         I +  KS+  +              
Sbjct: 350 EADIILAVVDGTRISEANQLDYIKSIWDEREERTLILLVNKSESLAEADRIGLSETLQTK 409

Query: 336 --TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
             T      IS+  G G++EL  ++  I+          I S+ RH   L +    L   
Sbjct: 410 LSTPTKPIFISAREGRGIDELKGELTQIMETSGANEADLIVSNARHHQLLREAFDALRRM 469

Query: 394 SLNEKDCGLDI------IAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
            L     G D+      +  +LR A  S+G+ITG  +  +  L  IF+ FCIGK
Sbjct: 470 RL-----GFDMGLSTDLLTLDLRHAITSIGEITGREITSDDTLHYIFAHFCIGK 518


>gi|116620213|ref|YP_822369.1| tRNA modification GTPase TrmE [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122255446|sp|Q02A42|MNME_SOLUE RecName: Full=tRNA modification GTPase mnmE
 gi|116223375|gb|ABJ82084.1| tRNA modification GTPase trmE [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 444

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 140/448 (31%), Positives = 229/448 (51%), Gaps = 21/448 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T    + I ++R+SGP    +           P +A L       G  +D+ +
Sbjct: 5   ETIVAIATPPGRAGIGMVRVSGPDARAIVSRFVTSIAWQPWQAHLAKLLDQQGHEIDQVI 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +  F  P S+T ED  E   HG   V+   +E  A     RLA PGEF+ RAF NG+IDL
Sbjct: 65  VTFFERPRSYTAEDLVEITCHGSPVVLRHAVER-ALEAGARLARPGEFTLRAFLNGRIDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE++ DLI + T  Q R++ + + G +S       ++L  + + +EA +DF+E+ D+ 
Sbjct: 124 PRAEAVRDLIDATTLYQARIAAQQVEGSVSRRIAPLKEQLLELIALLEAGIDFAED-DIS 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                E+L  +  +        +  + G ++  G  + I+G  N GKSSLFN L ++D A
Sbjct: 183 VAPPAEILRRLSPVLEGTERLAASFQYGGLVHQGLTLAIVGRPNVGKSSLFNRLLEQDRA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+IPGTTRDV++    + G  VK+ DTAGIRET++ VE  GI+R++  + ++DL L++
Sbjct: 243 IVTEIPGTTRDVVSETAAIGGIPVKLYDTAGIRETEERVESLGIERSYQAIVDSDLALVV 302

Query: 306 KEIN---SKKEISF--PKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIK 359
            ++    + ++ S         + +  K DL +      + + +S+ TG+G+ EL + I 
Sbjct: 303 LDLTRPVTAEDASLIARAGARALIVANKCDLPAAGDVPAEAIPVSALTGQGVPELRSAIL 362

Query: 360 SILSNKFKKLPFSIPSHK-------RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
             ++      P  +  H+       RH   L + V YL+ A         +++  +L  A
Sbjct: 363 DAVA------PKGVLEHETGFITSLRHEQLLREAVEYLQKAREAVASIPHEMLLLDLYAA 416

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +  ITG    + +L+ IFS FCIGK
Sbjct: 417 LRPIDAITGATTADDILNRIFSTFCIGK 444


>gi|303325513|ref|ZP_07355956.1| tRNA modification GTPase TrmE [Desulfovibrio sp. 3_1_syn3]
 gi|302863429|gb|EFL86360.1| tRNA modification GTPase TrmE [Desulfovibrio sp. 3_1_syn3]
          Length = 471

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 145/474 (30%), Positives = 240/474 (50%), Gaps = 45/474 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDK-- 63
           TI A++T      I I+RLSGP   +    + +   P  PR  + R +F   GR+LD+  
Sbjct: 3   TIAAIATPPGAGGIGIVRLSGP---RAKALLARMFLPLSPRFENFRPWFLHRGRVLDRYG 59

Query: 64  ----GLLIVF-PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
                +L VF P P +FTGED AE H HGG  +V  +LE + ++   R A  GEFSRRAF
Sbjct: 60  EALDDVLAVFMPGPRTFTGEDMAEIHCHGGPLIVQAVLESILRL-GARQAERGEFSRRAF 118

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++A+LI++ +    R S+  + G L        ++L  +R  +   +DF
Sbjct: 119 ANGRMDLSQAEAVAELIAAPSREALRYSLNRLDGLLGRRVLALREELEALRVQVCLAVDF 178

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            EEE V+  +       +  +   +   ++  K   +++ G  +V+ G  NAGKSSL NA
Sbjct: 179 PEEE-VECLAPAAFGRAVTEVACSVRRLLAGQKRARVMQQGAVVVLAGAVNAGKSSLLNA 237

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD------DIVEKEGIKRT 292
           L  ++ A+VTDIPGTTRD L    DL+G  V+++DTAG+R+T+      D VE  G+  +
Sbjct: 238 LLGRNRALVTDIPGTTRDFLEEACDLDGLPVRLTDTAGLRQTEEGRHGADAVEALGMALS 297

Query: 293 FLEVENADLILLL----------------KEINSKKEISFPKNIDFIFIGTKSDLYST-- 334
             ++  AD ILL+                 +  +++ +    +   + +  KSDL S   
Sbjct: 298 REKLGEADCILLVLDGARLGEAGAAAESCPDAAARQVLELAGDTPVLLVWNKSDLCSPEL 357

Query: 335 YTEEY-DHL----ISSFTGEGLEELINKIK-SILSNKFKKLPFS--IPSHKRHLYHLSQT 386
           +   + D L    +S+ +G  ++ L   ++ ++L++   + P     P+ ++ L      
Sbjct: 358 FPPRWADGLSCCKVSARSGGNVDALAMALRQTLLADGCDRPPSDGLAPNARQALALEEAL 417

Query: 387 VRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                + +        D  A  L  A+  LG++TG     ++LD +F++FCIGK
Sbjct: 418 AELEALEADVRAGQPYDCCAVRLDTAAAHLGEVTGLSSPAEVLDRVFAQFCIGK 471


>gi|223937602|ref|ZP_03629505.1| tRNA modification GTPase TrmE [bacterium Ellin514]
 gi|223893765|gb|EEF60223.1| tRNA modification GTPase TrmE [bacterium Ellin514]
          Length = 457

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 148/477 (31%), Positives = 241/477 (50%), Gaps = 66/477 (13%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF------PRKASLRYF-FGL-- 56
           +TI A++T      +++IRLSG     + +   K  +P       P  A      +G   
Sbjct: 5   DTIAAIATPLGEGGLAVIRLSGREALSIAD---KSFQPVGKSSINPSAAPTHTIHYGRII 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIA----VVNGILEELAKMPNLRLANPG 111
             G+ +D+ LL V  +P + T ED  E   HGG+     V++ +LE  A     RLA PG
Sbjct: 62  RHGQSVDEVLLAVMRAPRTLTREDVVEITCHGGLLPAKLVLDTVLENGA-----RLAEPG 116

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF++RAF NG+IDL +AE++ADLI + TE+    + E ++G+LS       D +    + 
Sbjct: 117 EFTKRAFLNGRIDLAQAEAVADLIHARTELALTAANEQLAGKLSQRINALRDDMVKTLAH 176

Query: 172 IEADLDFSEEEDVQNFSSK---------EVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
           +EA +DF +E+   +   K         E + ++L   N+          G+I+R G + 
Sbjct: 177 VEAHIDFPDEDISPDTKVKLIGRLERGLEFMEELLRTSNE----------GQILRRGIRA 226

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  NAGKSSL N L  +D AIV+ IPGTTRD +    ++ G  +   DTAG+RE  D
Sbjct: 227 AIIGRPNAGKSSLLNQLLGRDRAIVSHIPGTTRDTIEETANVRGLPIVFVDTAGLREAGD 286

Query: 283 IVEKEGIKRTFLEVENADLIL---------------LLKEINSKKEISFPKNIDF-IFIG 326
            +E EGI+R+   +  A+ IL                L E + KK I     +D    + 
Sbjct: 287 EIEVEGIRRSRETLSKAEFILHVLDASEPLTMADENYLAEFSDKKRILVRNKMDLPAKLD 346

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHL 383
            ++ +++   E     +   +G+G+E L + IKS++     + + L   I S  +   + 
Sbjct: 347 LQTGIHAPVVE-----VCCLSGKGIETLKDAIKSMVWAGEIRAEMLQVMINSRHQEALNR 401

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++     + +L + D  L+++A +LR+A  ++G+I G    E +LD IFS+FCIGK
Sbjct: 402 ARSATQRTITAL-KGDETLELVAMDLRIAVNAVGEIVGKTTTEDILDSIFSQFCIGK 457


>gi|268320269|ref|YP_003293925.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii FI9785]
 gi|262398644|emb|CAX67658.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii FI9785]
          Length = 461

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 150/462 (32%), Positives = 248/462 (53%), Gaps = 36/462 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-- 59
           +TI A+ST      ISI+RLSG     +   + K     K P     ++ Y   +D +  
Sbjct: 9   DTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGADLTKVP---SHTIHYGHIVDPKTK 65

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ ++ V  +P++FT ED  E + HGG+ V N IL+ L      R+A+PGEF++RAF
Sbjct: 66  DVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174
            NG+IDL +AES+ D++ ++T+  R+++M  ++G    ++ ++  + +D + H     E 
Sbjct: 125 MNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIRTMRQELLDTMAHE----EV 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E  D+ + +S+E+      +   I   +   + G+IIRNG    I+G  N GKSS
Sbjct: 181 NIDYPEY-DMDDLTSQEMKKKAEEVSKQIDQLLKTAQEGKIIRNGLATAIVGRPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L + D AIVTDI GTTRD L   + ++G  +K+ DTAGI  T+D VEK G++R+  
Sbjct: 240 LLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVERSKK 299

Query: 295 EVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
            +  ADL+LLL + +       K  ++   N   I I  K DL +  ++E    I+    
Sbjct: 300 AIAEADLVLLLLDASQDLTDEDKNLLNLTANKKRIIILNKQDLGTKISQEMIRKITDNPI 359

Query: 349 EGLEELINKIKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLEMASLNEKD 399
                L  K    L N  ++L FS         + +++R    L++  + LE       D
Sbjct: 360 IVTSILKQKNMDALENAIEQLFFSGIENSQNQILVTNQRQAGLLAKAKQSLEDVVNGIDD 419

Query: 400 C-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LD++  +L+ A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 AMPLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|291515475|emb|CBK64685.1| tRNA modification GTPase trmE [Alistipes shahii WAL 8301]
          Length = 451

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 151/456 (33%), Positives = 238/456 (52%), Gaps = 21/456 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           MN + +TI A +T A   AI++IR+SG   F VC+ I + ++P          +G     
Sbjct: 1   MNTDHDTIVAPATAA-GGAIAVIRISGGEAFAVCDRIFRGRRPLAEADGYTVHYGTIAEG 59

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            R++D  L  VF +P S+TGE+S E   HG   +V+ IL  L      R+A PGEF+ RA
Sbjct: 60  DRVIDDVLAAVFRAPHSYTGENSVEISCHGSSYIVSEILRLLIAAGG-RMAQPGEFTIRA 118

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           +  GK+DL +AE++AD+I+S +     L+   M G  S       +KL ++ S +E +LD
Sbjct: 119 YLAGKLDLSQAEAVADMIASSSRAAHALASTQMRGGYSEELESLREKLLNLTSLLELELD 178

Query: 178 FSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           FSEE DV+ F+ +  L   +  +  +I    S   LG  IR G  + I G  N GKS+L 
Sbjct: 179 FSEE-DVE-FADRTALRATMQRIAAEIDRLRSSFALGNAIREGVAVAIAGAPNVGKSTLL 236

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  ++ A+V++I GTTRDV+    ++ G L +  DTAGIR TDD +E+ GI+RT   +
Sbjct: 237 NRLLNEERAMVSEIAGTTRDVIEECANIGGVLFRFLDTAGIRPTDDRLEQMGIQRTMSSI 296

Query: 297 ENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--ISSFTG 348
           E A +++ + + ++        +         + +  K+D         + +  IS+  G
Sbjct: 297 ERARIVIHMVDASTLTGPVPAPDFPLRPGQKLLTVVNKTDKAPAAWRLPEGVVGISAKHG 356

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIA 406
           EG++ L + ++  +  +       + S+ RH   LS     L  A L+    GL  D+++
Sbjct: 357 EGIDALCDALRESVDTEALYHGDPVVSNSRHYEALSAAREALGQA-LDGLAHGLPTDLLS 415

Query: 407 ENLRLASVSLGKIT--GCVDVEQLLDIIFSKFCIGK 440
           E +R     L  IT  G +  +++L  IFSKFCIGK
Sbjct: 416 EEIRQVITHLSAITGRGAIAPDEILQNIFSKFCIGK 451


>gi|291278439|ref|YP_003495274.1| tRNA modification GTPase TrmE [Deferribacter desulfuricans SSM1]
 gi|290753141|dbj|BAI79518.1| tRNA modification GTPase TrmE [Deferribacter desulfuricans SSM1]
          Length = 442

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 156/456 (34%), Positives = 249/456 (54%), Gaps = 36/456 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFGLDGRILD 62
           +TI A  T  + +++ +IR+SGP  F V +++    KK   F  K      F  D  I D
Sbjct: 2   DTIVAPITPLMRTSVIVIRVSGPRAFDVSKYLYVSGKKINDFKHKYVYHGEFIADD-IKD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
             +   F SP S+TGE+  E   HG   +V   L+ + K+  +RLA PGEF+++AF NGK
Sbjct: 61  DVIFYAFHSPNSYTGENVVEISFHGNPIIVQKALKNIYKL-GIRLAEPGEFTKQAFLNGK 119

Query: 123 IDLLEAESLADLISSETEMQRRLSME----GMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           IDL++AE++ +LI S++      S E    GM GE+  +    +D    I S +EA +DF
Sbjct: 120 IDLIQAEAVYELIDSKSVTGIYSSYEKLRSGMRGEVDFIKENLLD----ILSVVEAYIDF 175

Query: 179 SEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
            EE D+ +F  K V   L++I+F    +   IS  +  + +  G KI I+G  N GKSSL
Sbjct: 176 PEE-DLSDFELKYVYERLDNIIF---KLEKLISTFETFKYVNEGVKIAIIGKPNVGKSSL 231

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++  IV+DIPGTTRDV+  +++++GY VK+ DTAGIR ++D +E  GI+ +  +
Sbjct: 232 MNYLLRENRVIVSDIPGTTRDVVEEEINIKGYNVKLIDTAGIRNSNDKIEVIGIEFSKNK 291

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
           +  A+++L L ++    +      ++  K+ + I +  K D       + D  IS  TGE
Sbjct: 292 LNEANIVLFLFDLEKGVDEDDLQIMNLVKDKNIIKVANKLD-KKMVDIDCDVEISVKTGE 350

Query: 350 GLEELIN----KIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           G+++L+N    +IKSI + N+  K   S    +R      + + +++    N     LD+
Sbjct: 351 GVDDLLNILEKQIKSIVVVNEDNKQLLS----ERQRDAFLEILNHIQDIKKNFNVLTLDL 406

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A +L      + ++TG +  E LL  IF KFCIGK
Sbjct: 407 LAVDLHFCLNKISELTGEIYTEDLLKNIFDKFCIGK 442


>gi|312869237|ref|ZP_07729409.1| tRNA modification GTPase TrmE [Lactobacillus oris PB013-T2-3]
 gi|311095258|gb|EFQ53530.1| tRNA modification GTPase TrmE [Lactobacillus oris PB013-T2-3]
          Length = 463

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 148/474 (31%), Positives = 246/474 (51%), Gaps = 48/474 (10%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD-- 57
           N E +TI A+ST      ISIIR+SG     V + + +  K   + AS    +G  +D  
Sbjct: 3   NSENDTIAAISTPVGEGGISIIRISGEDAVAVAKRLYRGSKDLDQVASHTINYGHIVDPD 62

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G  +D+ ++ V  +P ++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 63  TGAEVDEVMVSVMRAPHTYTCEDVIEINCHGGLLATNRILQ-LVLSYGARMAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL ++E++ DLI ++T+   ++++  + G+LS L       +  + + +E ++
Sbjct: 122 AFLNGRIDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRHLRQDILDVLAQVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  ++K +    L ++  I + +   K G+++R G    I+G  N GKSSL 
Sbjct: 182 DYPEYDAVEEMTTKMLKEKALDIQQRIQALLKTAKQGKVLREGLATAIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF--- 293
           N L  +D AIVTD+ GTTRDV+   ++++G  +K+ DTAGIR+TDD VEK G++R+    
Sbjct: 242 NTLLHEDKAIVTDVAGTTRDVIEEYVNVDGVPLKLIDTAGIRDTDDTVEKIGVERSKKAL 301

Query: 294 ---------------LEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLY 332
                          L  E+ +   LL     K+ I        P+ +D        D  
Sbjct: 302 DAADLILLLIDSSAPLTAEDRE---LLTATQGKQRIVILNKTDLPRQVDL-------DEL 351

Query: 333 STYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVR 388
              T   D LI  S    EG+++L  +I  +  N+  +   +  + ++ RH+  L Q   
Sbjct: 352 KKLT-AGDALIETSIVKHEGMDQLGQQISRMFFNEGIESSQNNVMVTNARHIGLLHQANA 410

Query: 389 YLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L    L   + G+  D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 411 ALSDV-LKGINAGMPVDLVQIDMTRCWDLLGEITGDSYQDELLDQLFSQFCLGK 463


>gi|323467508|gb|ADX71195.1| tRNA modification GTPase mnmE [Lactobacillus helveticus H10]
          Length = 467

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 148/469 (31%), Positives = 257/469 (54%), Gaps = 46/469 (9%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD-- 57
           E +TI A+ST      ISI+R+SG    ++   + K     K P     ++ Y   +D  
Sbjct: 13  EFDTIAAISTPIGEGGISIVRMSGEDAVKIANEVFKGADLTKVP---THTIHYGHIVDPD 69

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++R
Sbjct: 70  TDKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSH-GARMADPGEFTKR 128

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFI 172
           AF NG+IDL +AES+ D++ ++T+  R++++  ++G    ++ ++  + +D L ++    
Sbjct: 129 AFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILDTLANV---- 184

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E ++D+ E  D    ++K++ +    +   I   +   + G+I+RNG    I+G  N GK
Sbjct: 185 EVNIDYPEY-DADAVTAKQMADTAKSVIKKIDRLLKTAQEGKILRNGLATAIVGRPNVGK 243

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  TDD VEK G++R+
Sbjct: 244 SSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVERS 303

Query: 293 FLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEE------ 338
              ++ ADL+LLL  I++ +E++          K+   I +  KSDL    T +      
Sbjct: 304 KKALDRADLVLLL--IDASQELTAEDKALIEETKDKKRIIVLNKSDLGQKITVDEMKKQT 361

Query: 339 -YDHLISSFTGE----GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE- 391
             D +++S   E     LEELINK+  + + N   ++   + +++R    L++  + L+ 
Sbjct: 362 GSDVILTSILKEKNLDKLEELINKLFFAGIENSNDQV---MVTNQRQTSLLTKAKKELQD 418

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +    E    +DI   +   A  +LG+ITG    ++L+  +F +FC+GK
Sbjct: 419 VVQAVEDGIPIDIAQIDFTGAWDTLGEITGESAPDELVTQLFRQFCLGK 467


>gi|294784390|ref|ZP_06749681.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_27]
 gi|294487962|gb|EFG35317.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_27]
          Length = 455

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 148/461 (32%), Positives = 244/461 (52%), Gaps = 35/461 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61
           +TI A+ST      ISI+R+SG     + E I +   KK    +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRPKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ EE
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   + +++++     +I   +S    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 183 -GIDDPVPENLVDNLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--IS 344
           IL + +               IN+ K I     ID      K D+  T   + +    IS
Sbjct: 302 ILYVIDTSREIDEEDYRIYDIINTDKVIGILNKIDI-----KKDIDLTKFPKIEKWIEIS 356

Query: 345 SFTGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           + +  G++ L N+I   + N+      +KL  +   HK  L   ++ +  L +    +  
Sbjct: 357 ALSKLGIDNLENEIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMG 414

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++A +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 415 LPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|149036122|gb|EDL90788.1| rCG38694, isoform CRA_a [Rattus norvegicus]
          Length = 280

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 103/234 (44%), Positives = 146/234 (62%), Gaps = 2/234 (0%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64
           TIFA+S+G    AI++IR SGP+       +   ++P P R A LR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALREPPPARSACLRLLRHPCSGEPLDRS 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  E HVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCMELHVHGGPAVVSGVLQALGSVPGLRPAKAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GELS L   W   LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +    ++V  D+  L+  +SSH+   + G+ +R+G  +V+ G  NAGKSSL  A
Sbjct: 215 EEGVLEQVDRDVRALEVALSSHLRDARRGQRLRSGANVVVAGPPNAGKSSLPEA 268


>gi|227889160|ref|ZP_04006965.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii ATCC 33200]
 gi|227850389|gb|EEJ60475.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii ATCC 33200]
          Length = 487

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 150/462 (32%), Positives = 248/462 (53%), Gaps = 36/462 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-- 59
           +TI A+ST      ISI+RLSG     +   + K     K P     ++ Y   +D +  
Sbjct: 35  DTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGADLTKVP---SHTIHYGHIVDPKTK 91

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ ++ V  +P++FT ED  E + HGG+ V N IL+ L      R+A+PGEF++RAF
Sbjct: 92  DVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRAF 150

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174
            NG+IDL +AES+ D++ ++T+  R+++M  ++G    ++ ++  + +D + H     E 
Sbjct: 151 MNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIRTMRQELLDTMAHE----EV 206

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E  D+ + +S+E+      +   I   +   + G+IIRNG    I+G  N GKSS
Sbjct: 207 NIDYPEY-DMDDLTSQEMKKKAQEVSKQIDQLLKTAQEGKIIRNGLATAIVGRPNVGKSS 265

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L + D AIVTDI GTTRD L   + ++G  +K+ DTAGI  T+D VEK G++R+  
Sbjct: 266 LLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVERSKK 325

Query: 295 EVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
            +  ADL+LLL + +       K  ++   N   I I  K DL +  ++E    I+    
Sbjct: 326 AIAEADLVLLLLDASQDLTDEDKNLLNLTANKKRIIILNKQDLGTKISQEMIREITDNPI 385

Query: 349 EGLEELINKIKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLEMASLNEKD 399
                L  K    L N  ++L FS         + +++R    L++  + LE       D
Sbjct: 386 IVTSILKQKNMDALENAIEQLFFSGIENSQNQILVTNQRQAGLLAKAKQSLEDVVNGIDD 445

Query: 400 C-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LD++  +L+ A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 446 AMPLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 487


>gi|238926591|ref|ZP_04658351.1| tRNA modification GTPase TrmE [Selenomonas flueggei ATCC 43531]
 gi|238885537|gb|EEQ49175.1| tRNA modification GTPase TrmE [Selenomonas flueggei ATCC 43531]
          Length = 466

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 141/459 (30%), Positives = 234/459 (50%), Gaps = 25/459 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP------FPRKASLRYFFGLDG 58
           ++TI  ++T      I IIR+SG     V   + +           P  A   +    DG
Sbjct: 10  EDTISQIATPHGAGGIGIIRVSGEDALGVARRVFRPAAGGTLGDMAPYTARYGHIVAADG 69

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ +L+   +P S+TGED+AE   HGG  V+  +L    +    R A  GEF++RAF
Sbjct: 70  TVIDECILLYMRAPHSYTGEDTAELQCHGGAVVLREVLLRTWEA-GARPAEAGEFTKRAF 128

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            +G++DL  AES+ +LI++++      + E ++G  S        ++    + IEA +DF
Sbjct: 129 LHGRLDLARAESVMELIAAKSTRAAHAARERLAGAFSHAVTDIRTQILGAVAHIEAGIDF 188

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E+ D+   S++ +  +I      +   ++    G I+R+G K VI+G  N GKSSL NA
Sbjct: 189 PED-DIPAASAEHLAAEIDAASAAVRRLLAGADTGRILRDGVKTVIVGRPNVGKSSLLNA 247

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L   + AIVTD+PGTTRD++  ++ + G  +++ DTAG+R  +D VE+ G+ RT   + +
Sbjct: 248 LLGMERAIVTDVPGTTRDIIEEEISVAGIPLRLLDTAGLRAAEDAVEQIGVARTEQHLTD 307

Query: 299 ADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHL------I 343
           A+LIL        L  E ++          D I + +K D  S  + E++  +      I
Sbjct: 308 AELILAVFDASEPLTAEDHALLARLSAAAADIIILCSKEDRPSVLSAEDFAAVAAPVLRI 367

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLP-FSIPSHKRHLYHLSQ-TVRYLEMASLNEKDCG 401
           S+  G GL+ L  +I + +  +   L   ++P+ +R +  L +        A     D G
Sbjct: 368 SAQEGTGLDALREEIAAHIVQREGDLSDGALPNKEREIEALRRAEAHLAAAAETLAADLG 427

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D ++ +LR A  +LG+I G      L+D IFS+FCIGK
Sbjct: 428 TDFVSIDLRAAYDALGEILGETVDTDLIDRIFSEFCIGK 466


>gi|212550616|ref|YP_002308933.1| tRNA modification GTPase TrmE [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548854|dbj|BAG83522.1| tRNA modification GTPase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 464

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 148/463 (31%), Positives = 239/463 (51%), Gaps = 33/463 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKASLRYFFGL---DGR 59
           TI A++T      ++IIR+SG     +   I     K       +A+    FG+   +  
Sbjct: 6   TICAIATPPGQGGVAIIRISGKEALAIASRIYTPKAKNITTIEDQAAYTSSFGIIHKENE 65

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ILDK ++ VF SP SFTGED+ E   HG I +   I++ L       LA PGEF+++AF 
Sbjct: 66  ILDKVVVFVFRSPHSFTGEDTVEITCHGSIYIQQEIIKLLLD-NGCHLARPGEFTQKAFL 124

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AES+ DLISS +    RL+   M G           +L    S IE +LDF 
Sbjct: 125 NGKMDLSQAESVIDLISSSSAAAHRLAFNQMRGGFGKKLKNLRFQLLRFVSLIELELDF- 183

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            EEDV+     ++L+ +L +K+ +S  I    LG  I+NG  +VI+G +N GKS+L N L
Sbjct: 184 -EEDVEFVDRVKLLDSVLSIKDTLSHLIQSFSLGNAIKNGIPVVIIGETNVGKSTLLNHL 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV++I GTTRD++   +++ G   +  DTAGIR T + +E  GI+RT+ +++ A
Sbjct: 243 LNEEKAIVSEIHGTTRDIIEDVINISGIAFRFIDTAGIRNTKNEIELLGIERTYQKIKKA 302

Query: 300 DLILLLKEINS-KKEIS-FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            +++ + +     KEI      I  + +  K  +     ++ +H    F  + L   I+ 
Sbjct: 303 SIVIWMIDATKFNKEIKHIADRISPLIMDKKLIVIFNKIDKLNHSKQFFLKKKLPH-ISA 361

Query: 358 IKSILSNKFKK-----------------LPFS--IPSHKRHLYHLSQTVRYLEMASLNEK 398
               LS K+K+                 L ++  I ++ RH   L   +  L+      K
Sbjct: 362 EYICLSAKYKRNTDILEKTLLEAAKLSSLNYNDIIVTNMRHYEALRSALGALQRIEEGLK 421

Query: 399 -DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   ++I++++R  +  LG+ITG +  +++L+ IF  FCIGK
Sbjct: 422 TNVSYELISQDIRECTHYLGEITGEISTDEILENIFKNFCIGK 464


>gi|291457893|ref|ZP_06597283.1| tRNA modification GTPase TrmE [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291419437|gb|EFE93156.1| tRNA modification GTPase TrmE [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 459

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 159/465 (34%), Positives = 242/465 (52%), Gaps = 31/465 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFGL 56
           M   ++TI A++T A  + I IIR+SG     V   + + K        +   +RY F  
Sbjct: 1   MERAEDTICALATAAAEAGIGIIRISGEHALSVAGSLLRTKSGERLDLSKPNRVRYAFVY 60

Query: 57  DGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           D    +D+ L+  F +P S+TGEDS E + HGG+ ++  +L  L      R A PGEF++
Sbjct: 61  DNEEAVDEVLVTSFLAPHSYTGEDSVEINCHGGVLLLQKVLS-LCVRSGARPAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL EAE+++DLI + +E   R  +  + G LS    +    L    ++IEA 
Sbjct: 120 RAFLNGRLDLSEAEAVSDLIHARSEDAIRAGLSQLRGSLSRKIREMRKILLEDDAYIEAA 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKND--ISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           LD  E   ++ FS K  L+    L++   + +  S G+L   +R G + VI+G  NAGKS
Sbjct: 180 LDDPEHISLEGFSEKLRLHAESLLRDTEALEASFSSGRL---LREGIRTVIVGKPNAGKS 236

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NAL  ++ AIVT+I GTTRD L  +L L+   ++  DTAGIRET+D VE+ G++R  
Sbjct: 237 SLLNALLGEERAIVTEIEGTTRDTLEEELSLKDLNLRAIDTAGIRETEDPVERIGVERAK 296

Query: 294 LEVENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342
              E+ADLI+ +    + ++S  E  + F      + +  KSDL +  +EE         
Sbjct: 297 KAAEDADLIIYVVDASRPLDSSDEEILRFLPGKKALLLLNKSDLRTIISEEEMKKRSGCP 356

Query: 343 ---ISSFTGEGLEELINKIKSILSNK----FKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
              IS+ T EG+  L  KI+ +         ++L       ++ L +  Q +R  E+   
Sbjct: 357 VLSISARTEEGISMLSEKIREMFFGGELRWNQELIICSERQRKLLQNAGQALR--ELCRS 414

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            E     D    ++  A   LG+I G    E L+D IFSKFC+GK
Sbjct: 415 IEIGMPEDFYTIDIMRAYEELGQILGERVSEDLIDEIFSKFCMGK 459


>gi|120602958|ref|YP_967358.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris DP4]
 gi|205829135|sp|A1VER5|MNME_DESVV RecName: Full=tRNA modification GTPase mnmE
 gi|120563187|gb|ABM28931.1| tRNA modification GTPase trmE [Desulfovibrio vulgaris DP4]
          Length = 457

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 131/398 (32%), Positives = 210/398 (52%), Gaps = 22/398 (5%)

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD  L +  P P +FTGED +E H HGG  V+  +LE   +    R A  GEF+RRAF N
Sbjct: 64  LDDVLAVHMPGPRTFTGEDVSEIHCHGGSGVLAAVLEACVRH-GARYAERGEFTRRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++A++I++ +    RL+   + G L    G    +L  +R  +   +DF E
Sbjct: 123 GRMDLTQAEAVAEMIAAPSREGMRLAQAKLDGLLGQRVGALRARLDALRMQLCVAVDFPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE V+  + +  L +I  ++  +    +        ++G  +V+ G  NAGKSSL NAL 
Sbjct: 183 EE-VECLAPEAFLAEIEAVRQGVVELSAGYARTRCWQDGALVVLAGQVNAGKSSLMNALL 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +  AIVTD+PGTTRD +   L+L G  ++++DTAG+RET DIVE+EG++ +   V  AD
Sbjct: 242 GRRRAIVTDLPGTTRDFIEEPLNLSGLAIRLADTAGLRETGDIVEQEGVRMSRDLVAQAD 301

Query: 301 LILLLKEIN---SKKEISF-----PKNIDFIFIGTKSDL-----YSTYTEEYDHL-ISSF 346
           L+LL+ +        E+       P+ +  +F   K+DL       +  E    + +++ 
Sbjct: 302 LVLLVTDATQGLQGPELELLRHAGPERVLVVF--NKTDLLEGRILPSAPEGCRSVHVAAA 359

Query: 347 TGEGLEELINKIK-SILSNKFKKLPFS--IPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
           +G+G+E L+  I+ ++L+      P +  +  + R    L +    L E+A         
Sbjct: 360 SGDGVESLVTAIRAAVLAATGAGEPEAGELAPNMRQAAALDKAATILDELAGDIRAHVPY 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+    L  A  +L  +TG    E +LD IF+ FCIGK
Sbjct: 420 DLCGVRLDGACAALMDVTGQSTPEAILDAIFASFCIGK 457


>gi|256846684|ref|ZP_05552140.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_36A2]
 gi|256717904|gb|EEU31461.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_36A2]
          Length = 455

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 242/459 (52%), Gaps = 31/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61
           +TI A+ST      ISI+R+SG     + E I K   KK    +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFKPKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ EE
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   + +++++     +I   +S    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 183 -GIDDPVPENLVDNLKKASAEIRDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           IL + +               IN+ K I     ID   I    DL      E    IS+ 
Sbjct: 302 ILYVIDTSREIDEEDFRIYDIINTDKVIGILNKID---IKKDIDLSRFPKIEKWIEISAL 358

Query: 347 TGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           +  G++ L N+I   + N+      +KL  +   HK  L   ++ +  L +    +    
Sbjct: 359 SKMGIDNLENEIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMGLP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++A +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|33519494|ref|NP_878326.1| tRNA modification GTPase TrmE [Candidatus Blochmannia floridanus]
 gi|46577399|sp|Q7VQV3|MNME_BLOFL RecName: Full=tRNA modification GTPase mnmE
 gi|33517157|emb|CAD83539.1| GTPase for tRNA modification and thiophene and furan oxidation
           [Candidatus Blochmannia floridanus]
          Length = 474

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 161/479 (33%), Positives = 257/479 (53%), Gaps = 47/479 (9%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
           N+E +TI A+ST      I IIR+SG    +V   +  K  P PR A        +G I+
Sbjct: 3   NNEIDTIAAISTPIGRGGIGIIRVSGKLVPEVAMKLFNKI-PKPRTAEYLTCIDHNGSIM 61

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-LRLANPGEFSRRAFEN 120
           +K + + FP P SFTGE+  E H HGG  +++ +L+ +  + + +RLANPGEF+ RAF N
Sbjct: 62  EKVITLFFPEPHSFTGENILEIHGHGGQMILDLLLDRILNISSRIRLANPGEFTERAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            KIDL++AES+AD+I++ +    + +   + G  S+     ++K+T+ R++IE+ LDFS+
Sbjct: 122 EKIDLIQAESIADIINATSYQAAKSACNSLQGHFSNQIRIILNKITNFRTYIESTLDFSD 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +E + + S + + N +  + ++ +        G ++R+G K+VI G  NAGKSSLFN+L 
Sbjct: 182 QE-ISDISYQHIYNTLQNIIDNTNQICKLTHSGVLLRDGIKVVIAGKPNAGKSSLFNSLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENA 299
            KD AI+++I GTTRD+L   + L G    I DTAG ++ + + +E  G++++  E+  A
Sbjct: 241 NKDRAIISNISGTTRDILHEYIQLNGIAFHIIDTAGFKKNSTNEIELIGMQKSKYELSKA 300

Query: 300 DLILLLKEINS--------------KKEISFPKNIDFIFIG---TKSDLYSTY-----TE 337
           D IL + +                 KKE+S   NI+ +FI     KSDL   +     T 
Sbjct: 301 DHILWVIDSTDYSHNNSYNNIINSLKKELS-SNNIEAVFITIIRNKSDLSFEHNGIDTTN 359

Query: 338 EYDHL-ISSFTGEGLEELINKI-KSILSNKFKKLPFS--------IPSHKRHLYHLSQTV 387
           +Y  + +S+    G++ L   +  S +    K   FS          + KRHL  L +  
Sbjct: 360 KYACITLSALLNHGIDLLKKHLYDSAMLQIHKNSNFSSVEENQGNFIARKRHLKILQKVF 419

Query: 388 RYLEMA------SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +YL  A      ++   DC     AE+L+ A   L +I G +  + LL+ IF  FCIGK
Sbjct: 420 QYLLSAKTQLQYNMTVNDC----FAEDLKKAHEELAQIFGKLTPDDLLEEIFRAFCIGK 474


>gi|322698186|gb|EFY89958.1| GTPase family protein [Metarhizium acridum CQMa 102]
          Length = 483

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 145/450 (32%), Positives = 221/450 (49%), Gaps = 79/450 (17%)

Query: 60  ILD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSR 115
           ILD + LL+ FPSP++ TGE+  E HVHGG A V  +L  + K      +R A PGEF++
Sbjct: 33  ILDVEALLLYFPSPKTVTGEEVLELHVHGGPATVKAVLSAIPKCQTSTRVRYAEPGEFTK 92

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL + ESL D + +ETE QRR ++ G SG L   Y  W   L   R  IEA 
Sbjct: 93  RAFFNGRLDLAQIESLGDTLDAETEQQRRAAVRGNSGALGRSYEDWRHHLLQARGEIEAL 152

Query: 176 LDFSEEEDVQNF--SSKEVLNDILFLKNDISSHISQGKLG----EIIRNGYKIVILGHSN 229
           +DFSE+   Q+F  S  E+L ++      I   I   +LG    E++RNG +I ++G  N
Sbjct: 153 IDFSED---QHFDESQSELLGNVARQVAKILHSIDLHELGSQRSELLRNGIRIALVGPPN 209

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDD---- 282
            GKSSL N +  ++ +IV+   GTTRD++   LD+ G+L   +DTAG R   ET D    
Sbjct: 210 TGKSSLMNIIVGREASIVSGEAGTTRDIVEASLDIRGFLCSFADTAGFRSKTETSDEVIG 269

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEY 339
            VE+EGI+R     + +D++++L  + +      I F K    I    +S L     ++ 
Sbjct: 270 AVEEEGIRRARERAQESDMVVVLASVEAGPSGPFIHFDKETMAIATEAQSSLVIVNKQD- 328

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLP----------------------------- 370
                +  G  L  L+ + + ++  ++  LP                             
Sbjct: 329 -----TVDGGILSHLLQQFRQLIREEYPSLPQEPICISCKEDGSASKDGGVQHVVNALVA 383

Query: 371 -FS----IPSHKRHLYHLSQTVR------------YLEMASLNEK-DCGLDIIAENLRLA 412
            FS    +P   R L  +++  R            +++ A   E  D  + + AE LR A
Sbjct: 384 SFSQMTDMPPDMRDLLGVTERQRQLLAKCRGHLEDFMDEAQPREGLDSDIVLAAEYLRYA 443

Query: 413 SVSLGKITG---CVDVEQLLDIIFSKFCIG 439
           +  L +ITG     DVE++L ++F K+  G
Sbjct: 444 ADCLARITGKGEAGDVEEVLGVVFEKYASG 473


>gi|254302386|ref|ZP_04969744.1| thiophene/furan oxidation protein ThdF [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148322578|gb|EDK87828.1| thiophene/furan oxidation protein ThdF [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 455

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 149/459 (32%), Positives = 242/459 (52%), Gaps = 31/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61
           +TI A+ST      ISI+R+SG     + E I +   KK    +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTSRGEGGISIVRMSGQDSLNILEKIFRPKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ EE
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   + +++++     +I   +S    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 183 -GIDDPVPENLVDNLKKASAEIKELVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           IL + +               IN+ K I     ID   I    DL      E    IS+ 
Sbjct: 302 ILYVIDTSREIDEEDYRIYDIINTDKVIGILNKID---IKQDIDLSKFPKIEKWIEISAL 358

Query: 347 TGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           +  G++ L N+I   + N+      +KL  +   HK  L   ++ +  L +    +    
Sbjct: 359 SKIGIDNLENEIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMGLP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++A +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|269115231|ref|YP_003302994.1| tRNA modification GTPase [Mycoplasma hominis]
 gi|268322856|emb|CAX37591.1| tRNA modification GTPase [Mycoplasma hominis ATCC 23114]
          Length = 448

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/454 (32%), Positives = 243/454 (53%), Gaps = 23/454 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---G 58
           N+ ++TI A+S+G +  AISIIRLSG    ++ + +   K    +  ++ Y   +D   G
Sbjct: 3   NNIQDTIVAISSGNVNQAISIIRLSGEDSIEIVKKVFSGK--VGKDKTITYGNIIDNITG 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +I+D+ L+  F   +++TGE++ E + HGGI V N IL  L      RLAN GEF+RRAF
Sbjct: 61  KIVDEVLVNWFIGNKNYTGENTVEINAHGGIVVTNKILNLLI-ANGARLANRGEFTRRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGKI L +AE++  LI ++T  Q  +++   + + + +    I++L  I S IE ++D+
Sbjct: 120 LNGKISLDKAEAINSLIHAKTNKQAEIAISQFNSKDNLIIENLINELLTIISLIEINIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+  D++   +  + + +      + S I++ +    I  G  + I+G  N GKSSL N+
Sbjct: 180 SDYNDIKEMDANTLTSQLSKFNRKLDSIINKSENACDIYKGINVAIVGRPNTGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L     AIVT+IPGTTRDV+  +  + G+L  + DTAGIR+T D+VE  GI+R+   ++ 
Sbjct: 240 LIGSQKAIVTNIPGTTRDVVEGEFQINGFLFNLIDTAGIRQTKDLVESIGIERSKNAIKE 299

Query: 299 ADLILLLKE--INSKKEISFPKNID----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           A +++ + E  I   +E    K +     +I +  K DL +      + ++ S     L 
Sbjct: 300 AKIVIHMHEPFIKENEEDQIIKELSKGKVYIPVMNKQDLLNKDQYPKNMVLISSKENSLW 359

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAE 407
           EL    K+ L   +  +    P    + R L  L Q    +  A  SL++   G +++  
Sbjct: 360 EL----KNALVKNYLNIDLDDPQIIFNNRKLSLLKQAKISINTALESLSQ-GLGPEVVIL 414

Query: 408 NLRLASVSLGKITGCV-DVEQLLDIIFSKFCIGK 440
           ++  A  SL +I     D E LLD IFSKFC+GK
Sbjct: 415 DINEAWGSLSEILNKKHDNEALLDNIFSKFCLGK 448


>gi|225619284|ref|YP_002720510.1| tRNA modification GTPase TrmE [Brachyspira hyodysenteriae WA1]
 gi|254811473|sp|C0QXH9|MNME_BRAHW RecName: Full=tRNA modification GTPase mnmE
 gi|225214103|gb|ACN82837.1| tRNA modification GTPase TrmE [Brachyspira hyodysenteriae WA1]
          Length = 464

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 148/465 (31%), Positives = 253/465 (54%), Gaps = 36/465 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-------KKKKPFPRKASLRYFFGLD 57
           K+TI A+ST    SA++IIR+SG    ++   IC       K    F  + S       +
Sbjct: 7   KDTIAALSTPYSKSALAIIRMSGSKALEIASKICFYANNENKNINNFEHRKSYYALIKDE 66

Query: 58  GRI-LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             I +D+ +++   SP +FT ED+ EF  HG I V++ ++  L K    R AN GEF+ R
Sbjct: 67  NNIPVDEVIVLSSLSPNTFTSEDTIEFISHGSIVVIDALMNLLIK-NGARAANRGEFTYR 125

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           A+ NG+I + EAE++ DLI S  ++    S+  M G L+    +  + + +    +  +L
Sbjct: 126 AYINGRIGISEAEAIHDLIDSNNKLMAEASIYKMRGRLTREIDKLRENIKNSLMLVYGEL 185

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF E+E  ++FS  +++ +   +K DI + +S  K  E + NG K+ ILG  NAGKSS+F
Sbjct: 186 DFPEDE-TESFSYDKLIENFEIIKKDIENILSNSKRVENLINGIKVAILGRVNAGKSSIF 244

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLE 295
           N +  ++ AIV++I GTTRD L+ ++ +E     + DTAG  ++ D+ +E EGI+R    
Sbjct: 245 NMILDRERAIVSNIAGTTRDFLSENIYIENIPFYLMDTAGFHKKADNDIELEGIERAKKC 304

Query: 296 VENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---- 342
              +D+IL +          +IN  + ++  +N + I+I  KSD    + +E D+     
Sbjct: 305 AYESDIILAVFDGSDIANEDDINLIEFLNALENKNIIYILNKSDEDKKFNKEIDNANIIN 364

Query: 343 ISSFTGEGLEELINKIKSILSNK----FKKLPFSIPSHKRHLYHLSQTVRYLEMA---SL 395
           IS+ T +G ++LI+ +K  +S+     F K  +    + R   +L   ++ +++    SL
Sbjct: 365 ISTKTKDGKDKLISALKDYVSDSDMDIFNKETY---VNNRERCYLENGLKQIDICIKKSL 421

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +   LD +AE + + +  LG ++G VD E++++ IF+ FCIGK
Sbjct: 422 --ESYSLDEVAEEMNILNNILGNVSGKVDAEEVINEIFANFCIGK 464


>gi|302388592|ref|YP_003824414.1| tRNA modification GTPase TrmE [Clostridium saccharolyticum WM1]
 gi|302199220|gb|ADL06791.1| tRNA modification GTPase TrmE [Clostridium saccharolyticum WM1]
          Length = 459

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 235/460 (51%), Gaps = 31/460 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL------RYFFGLDG-R 59
           TI A++T    S I I+R+SG   FQ+ + I K K    +K SL       Y    DG  
Sbjct: 5   TIAAIATAMSSSGIGIVRISGEESFQIIDRIFKAKGNGEKKLSLEPSHTIHYGCIYDGDE 64

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L+++   P S+T ED+ E   HGG+ V   ILE + K    R A PGEF++RAF 
Sbjct: 65  IIDEVLVLIMKGPRSYTAEDTVEIDCHGGVLVTKRILETVLKY-GARPAEPGEFTKRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++ D+I ++     + S+  + G +S       +K+ +  +FIE+ LD  
Sbjct: 124 NGRVDLSQAEAVIDVIHAKNNYALKSSVSQLEGAVSRKIKDMREKIIYQIAFIESALDDP 183

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +  +  + +L  +  +K +++  I     G ++  G + VILG  NAGKSSL N L
Sbjct: 184 EHISLDGYQ-ELLLKTLEPIKEELNLLIKSSDNGRVLSEGIETVILGKPNAGKSSLLNVL 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTDI GTTRD L   + LE   + I DTAGIR+T D+VEK G+++     + A
Sbjct: 243 VGEERAIVTDIAGTTRDTLKEQIRLEDLSLNIIDTAGIRDTQDVVEKIGVEKARSAAQEA 302

Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
           DLI+               +L  I S+K +      D I + T+ D+    T      IS
Sbjct: 303 DLIIYVVDGSCPLDENDEEILTFIESRKAVVLLNKTDLIPVVTE-DMLKMRTRHQVIPIS 361

Query: 345 SFTGEGLEELINKIKSILSNK----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
           +    G+  L N+IK++  +       ++  +   HK  L    +++  +E +  NE   
Sbjct: 362 AKERLGIGNLENEIKAMFYHGEIDFNDQVYITNVRHKNALLEALKSLSMVEQSVRNE--M 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D  + +L  A   LG I G    + L++ IF KFC+GK
Sbjct: 420 PEDFYSIDLMDAYEQLGTILGESVEDDLVNEIFRKFCMGK 459


>gi|42560644|ref|NP_975095.1| tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|81400855|sp|Q6MUE7|MNME_MYCMS RecName: Full=tRNA modification GTPase mnmE
 gi|42492140|emb|CAE76737.1| tRNA modification GTPase, TrmE [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320928|gb|ADK69571.1| tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. mycoides
           SC str. Gladysdale]
          Length = 452

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 242/449 (53%), Gaps = 15/449 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +T+ A +T     AI++IR+SG   F +   + K KK   ++         +  ++D+ +
Sbjct: 5   DTVVAPATNISTQAIALIRVSGSEAFLIVNKLIKDKKLEEKRGLFLRKLYFEDELIDEVV 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L  F +P SFTGE+  E   HGGI   N I+  L +    R+A  GEFS+R+F NGKIDL
Sbjct: 65  LSCFVAPNSFTGENVVEIACHGGILNTNKIINILIQ-SGARMALRGEFSQRSFLNGKIDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE + +LI ++ E+  ++ +  MSG  +    +  D L  I S I+  +D+ + +DV+
Sbjct: 124 IQAEGINNLIHAKNELALKIGVANMSGSNNKAIIELKDNLLDIISRIQVSIDYPDYDDVE 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S +++ N +  + + I+  + + K+      G K  I+G +N GKSS+ NAL  +D A
Sbjct: 184 GSSIEDLTNLLEIINDQINKLLMRSKMAFKNSEGIKTAIIGQTNVGKSSILNALINEDKA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL- 304
           IVTDIPGTTRD++   ++LE   + + DTAGIR+T D+VE  GI ++   +  ADL+L  
Sbjct: 244 IVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLFV 303

Query: 305 -----LKEINSKKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLI-SSFTGEGLEE 353
                + ++++++     KN  +I I  K++  S        ++Y +++ +S     +++
Sbjct: 304 VNKENINDLDNQEIFELLKNKTYILIVNKAEKLSKTEKQNLEKKYQNIVFTSAINHDIDQ 363

Query: 354 LINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRL 411
           L+ +I  + L+ +  K    I      +  + Q    L  A S+ +    +DI+  +L  
Sbjct: 364 LVLRINQMYLNEEINKNDELILIGLNQITLVEQIKNKLSTALSIIKSGMPIDIVNVDLYD 423

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   L ++ G    ++++D IF K+C+GK
Sbjct: 424 AWNLLNELIGVEYEDEIIDNIFRKYCLGK 452


>gi|229496106|ref|ZP_04389828.1| tRNA modification GTPase TrmE [Porphyromonas endodontalis ATCC
           35406]
 gi|229317002|gb|EEN82913.1| tRNA modification GTPase TrmE [Porphyromonas endodontalis ATCC
           35406]
          Length = 468

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 160/472 (33%), Positives = 250/472 (52%), Gaps = 46/472 (9%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPS---CFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           ++ TI A+++G     I++IR+SG     C Q   F   +    PR A    ++G     
Sbjct: 8   DESTICALASGR-GGGIALIRVSGSQALPCLQQI-FSPHRDSWTPRHA----YYGTISRS 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ILD+ ++  + +P S+TGED  E   H    +V  +L  L      R A PGE++ R+
Sbjct: 62  GEILDEVVVTYYQAPNSYTGEDLVEISCHASPYIVQTLLRWLVA-EGCRPAQPGEYTLRS 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           + NG+ DL EAE++AD+I++E+  Q RL+++ + G+LS   G   D+L    S +E +LD
Sbjct: 121 YLNGRRDLAEAEAVADVIAAESAAQHRLALQQLRGKLSQELGSLHDQLLEFASLLELELD 180

Query: 178 FSEEEDVQNFSSKEVLNDI-LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           FSEE DV+ F+ +E L  +   ++  I   I     G+ ++ G  I ILG  N GKS+L 
Sbjct: 181 FSEE-DVE-FADREALRSLATAIQQRIGQLIGSFTQGKHLKEGIPIAILGQPNTGKSTLL 238

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  +D AIV+DI GTTRD +   L ++G L +I DTAG+R T D +E+ GIKR   + 
Sbjct: 239 NALLGEDRAIVSDIEGTTRDSIEEKLVIKGVLFRIIDTAGLRHTQDPIEQLGIKRALQKA 298

Query: 297 ENADLILLL-------KE-INSKKE--ISFP----------KNIDFIFIGTKSDLYSTYT 336
           E+A L L+L       KE +NS  E   S P            ID +    +  L +  +
Sbjct: 299 EDAALSLILLDALRVQKEGVNSSLEQLASLPLSPENRLVLLNKIDLLTEEEREALAAEVS 358

Query: 337 EEYDH---LISSFTGEG---LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
             +     L+S+  G G   L+EL+ K   I     ++   ++ +++RHL+ L +   +L
Sbjct: 359 AAFRQTPVLLSAKEGRGLEELQELLLKKSGIQEGNTEE--ETLITNERHLHALEKAATHL 416

Query: 391 EMA-SLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440
                  + +  +D I  +LR    +LG+ITG  +  E++L  IF+ FCIGK
Sbjct: 417 RTVLEALDANVSVDFITLDLRCVLEALGEITGHTITGEEVLHSIFAHFCIGK 468


>gi|212704371|ref|ZP_03312499.1| hypothetical protein DESPIG_02426 [Desulfovibrio piger ATCC 29098]
 gi|212672196|gb|EEB32679.1| hypothetical protein DESPIG_02426 [Desulfovibrio piger ATCC 29098]
          Length = 465

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/472 (31%), Positives = 239/472 (50%), Gaps = 47/472 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS------LRYFFGLD--G 58
           TI A++T      I I+R+SGP   Q  E + +   P   K S      L     LD  G
Sbjct: 3   TIAAIATAPGAGGIGIVRISGP---QSREILSRMFSPASAKFSGFRPWVLHRGRALDHEG 59

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             LD  L +  P P +FTGED AE H HGG  +V  ILE   ++   R A  GEFSRRAF
Sbjct: 60  APLDDVLAVFMPGPRTFTGEDVAEIHCHGGPFIVQAILETALRL-GARAAERGEFSRRAF 118

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++A+LI++ +    R S+  + G L         +L  +R  +   +DF
Sbjct: 119 VNGRMDLSQAEAVAELIAAPSREALRYSLNRLDGLLGRKVTALRQRLEELRVQMSLAVDF 178

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            +EE V+  + +     +  +   +   ++  +  ++++ G  +V+ G  NAGKSSL NA
Sbjct: 179 PDEE-VECLAPEAFAAVVEEVAAAVRGLLTGQRRAQVMQQGAVVVLAGAVNAGKSSLLNA 237

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ A+VTDIPGTTRD L     L+G  V+++DTAG+RETD+ VE+ G+  +  +V  
Sbjct: 238 LLGRNRALVTDIPGTTRDFLEESCQLDGLPVRLTDTAGLRETDESVEEMGVALSRQKVRQ 297

Query: 299 ADLILLLKEINS----------------KKEISFPKNIDFIFIGTKSDLY--STYTEEYD 340
           AD ILLL +                   ++ +    +I  + +  K DL   + +   + 
Sbjct: 298 ADAILLLVDGGRLGPAGAAADICPDEAVREVLEQAGDIPVLLVWNKVDLAEPAVWPPAWG 357

Query: 341 H-----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLE-- 391
           H      IS+ TG  ++ L  +++++L +     P S  +  + R    L + +  L+  
Sbjct: 358 HGRPCVRISASTGHNVDTLARRLRALLLDDGSHTPPSDGLAPNARQSLVLERALHELDAL 417

Query: 392 ---MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +A+ +  DC     +  L  A+  LG++TG    E++L+ +FS FCIGK
Sbjct: 418 LADIAAGSPYDC----CSVRLDAAAALLGEVTGLDSPEEVLNRVFSSFCIGK 465


>gi|291288764|ref|YP_003505580.1| tRNA modification GTPase TrmE [Denitrovibrio acetiphilus DSM 12809]
 gi|290885924|gb|ADD69624.1| tRNA modification GTPase TrmE [Denitrovibrio acetiphilus DSM 12809]
          Length = 437

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 142/446 (31%), Positives = 230/446 (51%), Gaps = 21/446 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI+A  +  + SA+ ++R+SG     V   +  +     R    +Y     G + D  L
Sbjct: 2   ETIYAALSPLITSAVIVVRISGSDALDVLSLLGAEGLEDKRVIHTKY----SGSVNDDVL 57

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +  F  P S+TGED  E   HG   +V+    +  K+   R A PGEF++RAF NGKIDL
Sbjct: 58  VTYFKGPASYTGEDVVEISFHGNPLIVSSAFADFEKL-GFRGAQPGEFTKRAFINGKIDL 116

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AES+A+LI S+T+     S   + G +        D   +I + IEA +DF EE D++
Sbjct: 117 TQAESVAELIDSKTKRGIDYSYSQLKGSMRKEVEGIRDIFINILTVIEAHIDFPEE-DIE 175

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                 V N++  L++ +S  +      +++R+GY+I I+G  N GKSSL N L K+D A
Sbjct: 176 EAHENIVFNNLQTLRDSVSEILRSYTTHKVLRDGYRIAIVGKPNTGKSSLMNYLLKEDRA 235

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+++ GTTRD +     L+G  V + DTAG+R TDD +EK GI++T   + +ADL+++L
Sbjct: 236 IVSEVAGTTRDYIESSFVLDGVPVSLVDTAGMRFTDDAIEKAGIEKTVSLINDADLVVVL 295

Query: 306 KE----INSKKE--ISFPKNIDFIFIGTKSDLYSTYT-EEYDHLISSFTGEGLEELINKI 358
            +    +N + E  +S  + +D + +  K D  +    +  D  +S    + ++  +N  
Sbjct: 296 LDNSLPLNHEDENVLSITEGMDRLLVVNKCDSQNILDLDNVDCHVSVKHDKNMKVFLNMC 355

Query: 359 KSILS----NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
            + +S    + F K   S+   +R  ++  Q +  +E   +   +   DI    L  +  
Sbjct: 356 AAKVSLSDADVFGK---SVMVTERQKHYFDQILTSVEKL-IEYSEIDFDIFEYELNSSLR 411

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            L +ITG    E +L  IF  FCIGK
Sbjct: 412 LLSEITGLSYTEDVLSNIFDNFCIGK 437


>gi|213609504|ref|ZP_03369330.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 268

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/271 (39%), Positives = 163/271 (60%), Gaps = 3/271 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE +   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            ++ AIVTDI GTTRDVL   + ++G  + I
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHI 268


>gi|302672308|ref|YP_003832268.1| tRNA modification GTPase TrmE [Butyrivibrio proteoclasticus B316]
 gi|302396781|gb|ADL35686.1| tRNA modification GTPase TrmE [Butyrivibrio proteoclasticus B316]
          Length = 478

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 154/478 (32%), Positives = 247/478 (51%), Gaps = 45/478 (9%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKA-SLRYFFGL 56
           N   +TI A++T    + I IIR+SGP   ++C+ I     K+      KA ++ Y + +
Sbjct: 7   NFNGDTICAIATAMSDAGIGIIRVSGPMALEICDKIYVSAAKEHNLLKHKANTITYGYIV 66

Query: 57  DG------RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANP 110
           D       +I+D+ ++    +P S+T ED  E + HGG+ ++N IL+ L K    R+A P
Sbjct: 67  DNSLPEENQIIDEVMISFMKAPHSYTREDVIEINSHGGMLIMNQILQLLLK-NGCRIAEP 125

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           GEF++RAF NG+IDL +AE++ D+IS++       S   + G++        +K+ +  +
Sbjct: 126 GEFTKRAFLNGRIDLTKAEAIMDVISAQNNFALEASRNQLQGKIYKKIKSLREKIIYQMA 185

Query: 171 FIEADLDFSEEEDVQNFSSKE--VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           FIE+ LD  E  D+  FS K   +++DI+   ++I   I     G+I ++G K VI+G  
Sbjct: 186 FIESALDDPENYDLTGFSDKLDIIISDIM---SEIGHMIDTADEGKIRKDGIKTVIVGKP 242

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           NAGKSSL N L   + AIVTDI GTTRD++   + L   ++ + DTAGIR T+D++EK G
Sbjct: 243 NAGKSSLLNTLTGDERAIVTDIAGTTRDIIEETVRLGDIVLHLIDTAGIRNTEDVIEKIG 302

Query: 289 IKRTFLEVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYS--------- 333
           + +    ++ A+L+L + +  +         I   KN   I +  K DL           
Sbjct: 303 VDKAKSMIQEAELVLYILDSTAEIDDEDNDIIDLCKNKKTIVLLNKDDLSDEIKITDDIV 362

Query: 334 ----TYTEEYDHLI---SSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLS 384
               + T  Y+  I   S   G G+++L   +  +  N     K    I ++ RH   L 
Sbjct: 363 RMRFSDTSNYNLPIIKTSMLKGNGIDDLKKAVSDLFLNGEIVPKQELYI-TNLRHKALLQ 421

Query: 385 QTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   L++   N  + GL  D    +L  A  SLG+I G    + L++ IFSKFC+GK
Sbjct: 422 DSFDSLQLVR-NSIEQGLSEDFYTVDLNDAYASLGEIIGEEVGDDLVEEIFSKFCMGK 478


>gi|149280420|ref|ZP_01886540.1| tRNA modification GTPase TrmE [Pedobacter sp. BAL39]
 gi|149228834|gb|EDM34233.1| tRNA modification GTPase TrmE [Pedobacter sp. BAL39]
          Length = 456

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 159/460 (34%), Positives = 244/460 (53%), Gaps = 31/460 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--DG-RIL 61
            +TI A+ST     AI +IRLSG     +   I   K    ++ S    FGL  DG  ++
Sbjct: 4   NDTIVALSTPPGAGAIGVIRLSGKDAITITNAIFSGKDLL-KQDSHTLHFGLIKDGDTVI 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ ++ +F +P+S+T E+  E   HG   ++  I+  L +      A PGEF+ RAF NG
Sbjct: 63  DEVVVSLFVAPKSYTKENVVEISCHGSNYIIQQIISLLIR-KGASAAKPGEFTLRAFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
            +DL +AE++ADLISS+++    ++M  + G  S+      ++L H  S IE +LDFSEE
Sbjct: 122 SLDLSQAEAVADLISSDSQAAHNVAMNQLRGGFSNELNVLREQLIHFASMIELELDFSEE 181

Query: 182 EDVQNFSSKEVLNDILFLKNDIS----SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
            DV+ F++++ L D++   N I+      I   +LG +I+ G   VI G  NAGKS+L N
Sbjct: 182 -DVE-FANRDQLQDLI---NKITVVLNKLIRSFELGNVIKEGINTVIAGRPNAGKSTLLN 236

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV- 296
           AL  +D AIV+DI GTTRD +   L++ G   ++ DTAGIRE  D +E  G+++T  ++ 
Sbjct: 237 ALLNEDRAIVSDIAGTTRDTIEELLNINGINFRLIDTAGIREATDTIEAIGVEKTMQKIN 296

Query: 297 ENADLILLLKEIN-----SKKEIS--FPKNIDFIFIGTKSDLYSTYTEEYDHL------- 342
           ++A L+ L   +N      K +I+      + FI +  K DL S    +   L       
Sbjct: 297 QSAVLVYLFDVVNLTIDQIKDDIASLHKPGLTFIAVANKIDLSSEEVLKSLDLPSDVHFI 356

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
            IS+   E +EEL   +             ++ ++ RH+  L +T   L   S   E   
Sbjct: 357 AISAKENEKVEELKQLVYDAAVGDQLSANHTMVTNIRHVEALQRTQDALRSVSNGLENPV 416

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D +A +++ A   LG+ITG V  + LL+ IFSKFCIGK
Sbjct: 417 TSDFLAMDIKQALHYLGEITGQVTTDDLLENIFSKFCIGK 456


>gi|212692016|ref|ZP_03300144.1| hypothetical protein BACDOR_01511 [Bacteroides dorei DSM 17855]
 gi|212665408|gb|EEB25980.1| hypothetical protein BACDOR_01511 [Bacteroides dorei DSM 17855]
          Length = 500

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 159/506 (31%), Positives = 255/506 (50%), Gaps = 81/506 (16%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG------- 55
           ++TI A++T A   AI IIR+SGP   ++    F     KP   +A     FG       
Sbjct: 6   QDTICAIAT-AQGGAIGIIRVSGPKAIEITSRIFTPATGKPLTERAPYTLTFGKICSPKR 64

Query: 56  --------------------LDGR---------ILDKGLLIVFPSPESFTGEDSAEFHVH 86
                               L  +         ++D+ L+ +F +P S+TGEDS E   H
Sbjct: 65  KINNTLFQKTSEIPQEKSETLQKKESIIPSAEEVIDEVLISLFRAPHSYTGEDSTEIMCH 124

Query: 87  GGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS 146
           G   ++  +++ L      R A PGE+++RAF NGK+DL +AE++ADLI+S +    RL+
Sbjct: 125 GSSYILQQVIQ-LLIYNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSAATHRLA 183

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           M  M G  S       ++L H  S +E +LDFS+ E+++ F++++ L+ +      + + 
Sbjct: 184 MSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELE-FANRDELSSLATHIEQVIAQ 242

Query: 207 ISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           ++    +G  I+NG  + I+G +NAGKS+L NAL  ++ AIV+DI GTTRDV+   ++L+
Sbjct: 243 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 302

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEIS 315
           G   +  DTAGIR+T+D +E  GI+RTF +++ A +IL +  I+S          K EI 
Sbjct: 303 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWM--IDSTDAQRRFEELKAEI- 359

Query: 316 FP--KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK-----SILSNKFKK 368
            P  +    I +  KSDL     +E   L + F    +E+L    K     +IL  K  +
Sbjct: 360 LPHCEGKKMIILFNKSDLLLAIQKE--ELSAIFADMKVEKLFISAKKRENITILEKKLVQ 417

Query: 369 LPFSIPSHKR------HLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSL 416
              ++P   +      ++ H     R L+  S++    GL      D+++E+LR     L
Sbjct: 418 AA-ALPEINQNDIIITNVRHYEALTRALD--SIHRVQEGLQLGLSGDLVSEDLRQCIHEL 474

Query: 417 GKIT--GCVDVEQLLDIIFSKFCIGK 440
            +I   G +  E+ L  IF  FCIGK
Sbjct: 475 SEIVAEGGITSEETLQNIFQNFCIGK 500


>gi|294660633|ref|NP_853501.2| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str.
           R(low)]
 gi|298286914|sp|Q7NAD9|MNME_MYCGA RecName: Full=tRNA modification GTPase mnmE
 gi|284812296|gb|AAP57069.2| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str.
           R(low)]
 gi|284931001|gb|ADC30940.1| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str.
           R(high)]
          Length = 453

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 150/452 (33%), Positives = 246/452 (54%), Gaps = 25/452 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGRILDK 63
           ETI+A++T    SAI +IRLSGP  F++   IC K+  K   R  + R     + +I+D 
Sbjct: 10  ETIYALATAPYNSAIHVIRLSGPDAFEIINKICDKQITKEGYRIQNARIVD--NDQIIDD 67

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            LL+ F +P+SFTGEDS E + HGG+ V+N I+  L K     LA  GEFS+R++ N KI
Sbjct: 68  VLLMKFVAPKSFTGEDSIEINCHGGLFVINKIMALLNKH-GAHLARRGEFSKRSYINKKI 126

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +A ++ DLI ++  +    S++ +SGE S        ++  +   +E  +D+ E ED
Sbjct: 127 DLNQATAIHDLIFAKNNLSHSASIKALSGEFSKDIKNIQQEIFRLIGLVEIAIDYPEYED 186

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
            +   ++E  N +  ++  +   +++    + I  G KI I+G  NAGKSSL NAL  + 
Sbjct: 187 EKKELTEEFKN-LTNIRQKLQRIVNKSLKLKQISEGIKIAIVGEPNAGKSSLLNALLNEQ 245

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            AIVT+IPGTTRD +   + L   L + + DTAGIR++ D +E+ GI ++F  ++ +DL+
Sbjct: 246 KAIVTNIPGTTRDTVEGQIVLNDELIINLIDTAGIRKSSDQIEQIGINKSFKTIDKSDLV 305

Query: 303 LLLKEINSKKEIS--------FPKNIDFIFIGTKSDLY--STYTEEYDHLISSFTGEGLE 352
           + L ++N  +             K   F+ +G K D    +  T E    IS+   + + 
Sbjct: 306 IYLIDLNKYQNYDKTNIYKYLINKKKQFVLVGNKVDEVDPTLNTGEIQIKISAKNND-IS 364

Query: 353 ELINKIK----SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           +LI  ++    +I +++ K+   SI   +  + +L QT  Y     LN+ +   D++ ++
Sbjct: 365 DLIKYLEETSLAIFNDENKQ--DSIFQEEWQI-NLLQTALYNINLILNDPNQYHDLVIQH 421

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L  A+ SL K+    +   L+D IF  FC+GK
Sbjct: 422 LNEANNSLLKVLSEYEDYNLIDEIFKNFCLGK 453


>gi|42519903|ref|NP_965833.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii NCC 533]
 gi|81832151|sp|Q74H94|MNME_LACJO RecName: Full=tRNA modification GTPase mnmE
 gi|41584193|gb|AAS09799.1| probable tRNA modification GTPase TrmE [Lactobacillus johnsonii NCC
           533]
          Length = 461

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 148/460 (32%), Positives = 248/460 (53%), Gaps = 32/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGR---I 60
           +TI A+ST      ISI+RLSG     +   + K       P   ++ Y   +D +   +
Sbjct: 9   DTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGADLTQVPSH-TIHYGHIVDPKTKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ ++ V  +P++FT ED  E + HGG+ V N IL+ L      R+A+PGEF++RAF N
Sbjct: 68  VDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRAFMN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176
           G+IDL +AES+ D++ ++T+  R+++M  ++G    ++ ++  + +D + H     E ++
Sbjct: 127 GRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIRTMRQELLDTMAHE----EVNI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  D+ + +S+E+      +   I   +   + G+IIRNG    I+G  N GKSSL 
Sbjct: 183 DYPEY-DMDDLTSQEMKKKAEEVSKQIDQLLKTAQEGKIIRNGLATAIVGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L + D AIVTDI GTTRD L   + ++G  +K+ DTAGI  T+D VEK G++R+   +
Sbjct: 242 NYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVERSKKAI 301

Query: 297 ENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
             ADL+LLL + +       K  ++   N   I I  K DL +  ++E    I+      
Sbjct: 302 AEADLVLLLLDASQDLTDEDKNLLNLTANKKRIIILNKQDLGTKISQEMIREITDNPIIV 361

Query: 351 LEELINKIKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLEMASLNEKDC- 400
              L  +  + L N  ++L FS         + +++R    L++  + LE       D  
Sbjct: 362 TSILKQENMAALENAIEQLFFSGIENSQNQILVTNQRQAGLLAKAKQSLEDVVNGIDDAM 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD++  +L+ A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 422 PLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|260495366|ref|ZP_05815493.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_33]
 gi|260197144|gb|EEW94664.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_33]
          Length = 455

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 148/459 (32%), Positives = 242/459 (52%), Gaps = 31/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61
           +TI A+ST      ISI+R+SG     + E I +   KK    +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRPKNKKASELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ EE
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKITTIKKSVLDLAAHINVVLDYPEE 182

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   + +++++     +I   +     G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 183 -GIDDPVPENLVDNLKKASAEIKDLVLSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDI+E  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENIGVEKSKELINSADL 301

Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           IL + +               IN+ K I     ID   I    DL      E    IS+ 
Sbjct: 302 ILYVIDISREIDEEDFRIYDIINTDKVIGILNKID---IKKDIDLSKFSKIEKWIEISAL 358

Query: 347 TGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           +  G++ L N+I   + N+      +KL  +   HK  L   ++ +  L +    +K   
Sbjct: 359 SKIGIDNLENEIYKFIMNENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDKGFP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++A +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|238855502|ref|ZP_04645807.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 269-3]
 gi|260665206|ref|ZP_05866055.1| tRNA modification GTPase TrmE [Lactobacillus jensenii SJ-7A-US]
 gi|282931528|ref|ZP_06337027.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1]
 gi|238831868|gb|EEQ24200.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 269-3]
 gi|260560943|gb|EEX26918.1| tRNA modification GTPase TrmE [Lactobacillus jensenii SJ-7A-US]
 gi|281304335|gb|EFA96438.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1]
          Length = 460

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 150/464 (32%), Positives = 248/464 (53%), Gaps = 36/464 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---G 58
           E +TI A+ST      ISI+RLSG    ++   + K K    + AS    +G  +D    
Sbjct: 6   EFDTIAAISTPIGEGGISIVRLSGEDAVKIANKLFKGKN-LSKVASHTINYGHIVDPETS 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ ++ V  +P++FT ED  E + HGGI V N IL+ L K    R+A  GEF++RAF
Sbjct: 65  EVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLKH-GARMAEAGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174
            NG+IDL +AES+ D++ ++T+  R+++M  + G    ++ ++  + +D L +I    E 
Sbjct: 124 VNGRIDLTQAESVMDIVRAKTDKARQVAMNQLEGGLLVKIRTMRQEILDTLANI----EV 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E  D    ++K++      +   I+  +     G+I+R+G    I+G  N GKSS
Sbjct: 180 NIDYPEY-DADQVTAKQMQETSKSVIEKINRLLKTASEGKIMRSGLATAIVGRPNVGKSS 238

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L + D AIVTD+ GTTRD L   + ++G  +K+ DTAGI  T+D VEK G++R+  
Sbjct: 239 LLNYLTQDDKAIVTDVAGTTRDTLEEYVSIKGVPLKLVDTAGIHHTEDKVEKIGVERSKK 298

Query: 295 EVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE-------YDH 341
            +E ADL+LLL   +       +K I + K+   I +  KSDL     +E        + 
Sbjct: 299 AIEQADLVLLLLNASEDLTPEDEKLIDYTKDKKRIVVLNKSDLGMKLNKEDLAKKTNAEI 358

Query: 342 LISSFTGE----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLN 396
           +++S   E     LEE I+K+    S         + +++R    L +    L ++    
Sbjct: 359 VVTSILKEENLDDLEEAISKL--FFSGIHNSNNDVLVTNQRQAGLLEKAKTQLTDVIDAV 416

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + D  +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 417 DNDVPVDIAQIDFTGAWDTLGEITGDSAPDELITQLFSQFCLGK 460


>gi|226490853|ref|NP_001149416.1| LOC100283042 [Zea mays]
 gi|195627080|gb|ACG35370.1| tRNA modification GTPase trmE [Zea mays]
          Length = 546

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 148/478 (30%), Positives = 241/478 (50%), Gaps = 54/478 (11%)

Query: 7   TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKK------KKPF-PRKASLRYFFGLD 57
           TI A+ T  G  P+A+ I+R+SGP    V + + +         P+ PR   + Y   LD
Sbjct: 79  TIAAIVTSLGGGPAAVGIVRISGPDAVAVADRVFRPAGTRRASTPWQPRSHFVEYGLALD 138

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G ++D+ L++   SP S+T ED  E   HG    +  +L    +    RLA+PGEF+ 
Sbjct: 139 ADGSVIDEVLVVPMLSPRSYTREDVVELQCHGNDLCLRRLLRACLEA-GARLADPGEFTL 197

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE+++ LIS+++      ++ G+ G  S+L      +   + + IEA 
Sbjct: 198 RAFLNGRLDLAQAENVSRLISAKSAAAADSALAGIQGGFSTLVKSLRSRCIELLTEIEAR 257

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF  E+++       +++ I  ++ ++   +      +++++G +I I+G  N GKSSL
Sbjct: 258 LDF--EDEMPPLDPVMLVSKINCMRKEVQDALDTSNYDKLLQSGLQIAIIGRPNVGKSSL 315

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NA +K + AIVT+I GTTRDV+  ++ + G  V + DTAGIRETDD+VEK G+KR+   
Sbjct: 316 LNAWSKSERAIVTEIAGTTRDVVEANVSIHGVPVTLLDTAGIRETDDVVEKIGVKRSEAA 375

Query: 296 VENADLILL--------------LKEINSKKEISFPKNIDFIFIGTKSDLYS-TYTEEYD 340
              ADLI++              L E  S    S    +  + +  K D       E++ 
Sbjct: 376 AMGADLIVMAISAVDGWTDDDTKLMEHVSVNRKSSGSAVPMVLVINKVDCAPFVPGEQFK 435

Query: 341 HLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL----YHLSQTV 387
                F         TG+G+ +L + +  +   +       +PS  R          Q +
Sbjct: 436 QFSGLFRKHVQTCAVTGKGISDLESAVIEVRGIEH------VPSEGRRWTVNQRQFEQLL 489

Query: 388 RYLEM-----ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R  E      +S+NE+   +D    +LR A+++L  I+G    E++L  IFSKFCIGK
Sbjct: 490 RTKEAFARLESSINEQ-LPMDFWTVDLREAALALATISGEDISEEVLSSIFSKFCIGK 546


>gi|302340304|ref|YP_003805510.1| tRNA modification GTPase TrmE [Spirochaeta smaragdinae DSM 11293]
 gi|301637489|gb|ADK82916.1| tRNA modification GTPase TrmE [Spirochaeta smaragdinae DSM 11293]
          Length = 456

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 149/456 (32%), Positives = 239/456 (52%), Gaps = 34/456 (7%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLD--GRILDK 63
           I A++T    SAI+++R SG  C  +      +       +  SL Y   LD  G  +++
Sbjct: 12  IAALATPWGRSAIAVVRTSGEGCLDLLARTFSRPAALSGAKSHSLTYGHMLDASGLPIEQ 71

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            +L VF +P  +TGE+S E + HG  + +  +L  L ++     A PGEF+ RAF NGKI
Sbjct: 72  VVLGVFHAPRGYTGEESVEIYTHGSPSGIQRLLSRLYEV-GFSEAAPGEFTLRAFLNGKI 130

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL EAE++A++I +++     ++M+ +SG L         ++  + + +E  LD+ EEE 
Sbjct: 131 DLTEAEAVAEIIDAKSSAAHAMAMDRLSGSLFRSIDALKKRIVEVLASVEVLLDYPEEEL 190

Query: 184 VQ----NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +     +F+    L+++L     +S+   +G+L    R G K+ I G +NAGKSSLFN  
Sbjct: 191 LDAPEPDFAP---LSEVLHSVEALSATFQEGRL---YREGAKVAIAGRTNAGKSSLFNLF 244

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K+D +IV+DI GTTRD +     + G  V + DTAG+R+    VE EGI+R+   V+ A
Sbjct: 245 LKEDRSIVSDIHGTTRDYIEAWTTIAGIPVCLYDTAGLRDAGHPVEVEGIRRSGKVVDAA 304

Query: 300 DLILLLKEINS----------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
           DL+L L +  +            + S      +IF+ T+SDL     ++    +S+ TG+
Sbjct: 305 DLVLYLIDGTTGPSPDEFSLLADQTSAEGQGRYIFVMTRSDLGCQVWDDGVVAVSAVTGQ 364

Query: 350 GLEELINKIKSILSNKFKKLPFSIP-----SHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           GL+ L  K+   LS K   L    P       KR L   S  ++ + +  +  +    D 
Sbjct: 365 GLDRLQKKMAKCLSAK-APLTSGEPVVDSLRQKRLLDRCSSALQAV-LEGVGSRS--WDE 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A +L+ A  +LG+ITG V    +L+ IFS FC+GK
Sbjct: 421 LAMDLKDAVDALGEITGEVTSADILESIFSGFCLGK 456


>gi|237708959|ref|ZP_04539440.1| tRNA modification GTPase TrmE [Bacteroides sp. 9_1_42FAA]
 gi|265756268|ref|ZP_06090597.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_33FAA]
 gi|229457021|gb|EEO62742.1| tRNA modification GTPase TrmE [Bacteroides sp. 9_1_42FAA]
 gi|263233859|gb|EEZ19468.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_33FAA]
          Length = 498

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 157/504 (31%), Positives = 253/504 (50%), Gaps = 77/504 (15%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG------- 55
           ++TI A++T A   AI IIR+SGP   ++    F     KP   +A     FG       
Sbjct: 4   QDTICAIAT-AQGGAIGIIRVSGPKAIEITSRIFTPATGKPLTERAPYTLTFGKICSPKR 62

Query: 56  --------------------LDGR---------ILDKGLLIVFPSPESFTGEDSAEFHVH 86
                               L  +         ++D+ L+ +F +P S+TGEDS E   H
Sbjct: 63  KINNTLFQKTSEIPQEKSETLQKKESIIPSAEEVIDEVLISLFRAPHSYTGEDSTEIMCH 122

Query: 87  GGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS 146
           G   ++  +++ L      R A PGE+++RAF NGK+DL +AE++ADLI+S +    RL+
Sbjct: 123 GSSYILQQVIQ-LLIYNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSAATHRLA 181

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           M  M G  S       ++L H  S +E +LDFS+ E+++ F++++ L+ +      + + 
Sbjct: 182 MSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELE-FANRDELSSLATHIEQVIAQ 240

Query: 207 ISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           ++    +G  I+NG  + I+G +NAGKS+L NAL  ++ AIV+DI GTTRDV+   ++L+
Sbjct: 241 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 300

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFP 317
           G   +  DTAGIR+T+D +E  GI+RTF +++ A +IL + +           K EI  P
Sbjct: 301 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWMIDSTDAQRRFEELKAEI-LP 359

Query: 318 --KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK-----SILSNKFKKLP 370
             +    I +  KSDL     +E   L + F    +E+L    K     +IL  K  +  
Sbjct: 360 HCEGKKMIILFNKSDLLLAIQKE--ELSAIFADMKVEKLFISAKKRENITILEKKLVQAA 417

Query: 371 FSIPSHKR------HLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGK 418
            ++P   +      ++ H     R L+  S++    GL      D+++E+LR     L +
Sbjct: 418 -ALPEINQNDIIITNVRHYEALTRALD--SIHRVQEGLQLGLSGDLVSEDLRQCIHELSE 474

Query: 419 IT--GCVDVEQLLDIIFSKFCIGK 440
           I   G +  E+ L  IF  FCIGK
Sbjct: 475 IVAEGGITSEETLQNIFQNFCIGK 498


>gi|150006140|ref|YP_001300884.1| tRNA modification GTPase TrmE [Bacteroides vulgatus ATCC 8482]
 gi|254883528|ref|ZP_05256238.1| tRNA modification GTPase TrmE [Bacteroides sp. 4_3_47FAA]
 gi|205829059|sp|A6L6E8|MNME_BACV8 RecName: Full=tRNA modification GTPase mnmE
 gi|149934564|gb|ABR41262.1| putative GTPase, ThdF family [Bacteroides vulgatus ATCC 8482]
 gi|254836321|gb|EET16630.1| tRNA modification GTPase TrmE [Bacteroides sp. 4_3_47FAA]
          Length = 500

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 155/503 (30%), Positives = 250/503 (49%), Gaps = 75/503 (14%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL------ 56
           ++TI A++T A   AI IIR+SGP   ++    F     KP   +A     FG       
Sbjct: 6   QDTICAIAT-AQGGAIGIIRVSGPKAIEITSRIFTPATGKPLTERAPYTLTFGKICSPKR 64

Query: 57  ------------------------------DGRILDKGLLIVFPSPESFTGEDSAEFHVH 86
                                            ++D+ L+ +F +P S+TGEDS E   H
Sbjct: 65  KINNTLFQQTSEIPQEKSETLQKTSSITSSAEEVIDEVLISLFRAPHSYTGEDSTEIMCH 124

Query: 87  GGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS 146
           G   ++  +++ L      R A PGE+++RAF NGK+DL +AE++ADLI+S +    RL+
Sbjct: 125 GSSYILQQVIQ-LLIYNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSASTHRLA 183

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           M  M G  S       ++L H  S +E +LDFS+ E+++ F++++ L+ +      + + 
Sbjct: 184 MSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELE-FANRDELSSLATHIEQVIAR 242

Query: 207 ISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           ++    +G  I+NG  + I+G +NAGKS+L NAL  ++ AIV+DI GTTRDV+   ++L+
Sbjct: 243 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 302

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFP- 317
           G   +  DTAGIR+T+D +E  GI+RTF +++ A +IL +       +     K    P 
Sbjct: 303 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWMIDSTDAQRRFEELKADILPH 362

Query: 318 -KNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELINKIK----SILSNKFKKLPF 371
            +    I +  KSD L +T  EE   + +    E L   I+  K    +IL  K  +   
Sbjct: 363 CEGKKMIILFNKSDLLLATQKEELSAIFADMKVEKL--FISAKKRENITILEKKLVQAA- 419

Query: 372 SIPSHKR------HLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKI 419
           ++P   +      ++ H     R L+  S++    GL      D+++E+LR     L +I
Sbjct: 420 ALPEVNQNDIIITNVRHYEALTRALD--SIHRVQEGLQLELSGDLVSEDLRQCIHELSEI 477

Query: 420 T--GCVDVEQLLDIIFSKFCIGK 440
              G +  E+ L  IF  FCIGK
Sbjct: 478 VAEGGITSEETLQNIFQNFCIGK 500


>gi|313665711|ref|YP_004047582.1| tRNA modification GTPase TrmE [Mycoplasma leachii PG50]
 gi|312949836|gb|ADR24432.1| tRNA modification GTPase TrmE [Mycoplasma leachii PG50]
          Length = 452

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/449 (30%), Positives = 243/449 (54%), Gaps = 15/449 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +T+ A +T     AI++IR+SG   F +   + K KK   ++         +  ++D+ +
Sbjct: 5   DTVVAPATNISTQAIALIRVSGSEAFLIVNKLIKDKKLEEKRGLFLRKLYFEDELIDEVV 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L  F +P SFTGE+  E   HGGI   N I+  L +    R+A  GEFS+R+F NGKIDL
Sbjct: 65  LSCFVAPNSFTGENVVEIACHGGILNTNKIINILIQ-SGARMALRGEFSQRSFLNGKIDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE + +LI ++ ++  ++ +  MSG  +    +  D L  I S I+  +D+ + +DV+
Sbjct: 124 IQAEGINNLIHAKNDLALKIGVANMSGSNNKAIIELKDNLLDIISRIQVSIDYPDYDDVE 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S +++ N +  + + I+  + + K+      G K  I+G +N GKSS+ NAL  +D A
Sbjct: 184 GSSIEDLTNLLEIINDQINKLLMRSKMAFKNSEGIKTAIVGQTNVGKSSILNALINEDKA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL- 304
           IVTDIPGTTRD++   ++LE   + + DTAGIR+T D+VE  GI ++   +  ADL+L  
Sbjct: 244 IVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLFV 303

Query: 305 -----LKEINSKKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLI-SSFTGEGLEE 353
                + ++++++     KN  +I I  K++  S        ++Y++++ +S     +++
Sbjct: 304 VNKENINDLDNQEIFELLKNKTYILIVNKAEKLSKTEKQNLEKKYENIVFTSAINHNIDQ 363

Query: 354 LINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRL 411
           L+ +I  + L+ +  K    I      +  + Q    L  A S+ +    +DI+  +L  
Sbjct: 364 LVLRINQMYLNEEINKNDELILIGLNQITLVEQIKNKLSTALSVIKSGMPIDIVNVDLYD 423

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   L ++ G    ++++D IF K+C+GK
Sbjct: 424 AWNLLNELIGVEYEDEIIDNIFRKYCLGK 452


>gi|319641684|ref|ZP_07996367.1| tRNA modification GTPase mnmE [Bacteroides sp. 3_1_40A]
 gi|317386658|gb|EFV67554.1| tRNA modification GTPase mnmE [Bacteroides sp. 3_1_40A]
          Length = 498

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 153/503 (30%), Positives = 250/503 (49%), Gaps = 75/503 (14%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL------ 56
           ++TI A++T A   AI IIR+SGP   ++    F     KP   +A     FG       
Sbjct: 4   QDTICAIAT-AQGGAIGIIRVSGPKAIEITSRIFTPATGKPLTERAPYTLTFGKICSPKR 62

Query: 57  ------------------------------DGRILDKGLLIVFPSPESFTGEDSAEFHVH 86
                                            ++D+ L+ +F +P S+TGEDS E   H
Sbjct: 63  KINNTLFQQTSEIPQEKSETLQKTSSITSSAEEVIDEVLISLFRAPHSYTGEDSTEIMCH 122

Query: 87  GGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS 146
           G   ++  +++ L      R A PGE+++RAF NGK+DL +AE++ADLI+S +    RL+
Sbjct: 123 GSSYILQQVIQ-LLIYNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSASTHRLA 181

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           M  M G  S       ++L H  S +E +LDFS+ E+++ F++++ L+ +      + + 
Sbjct: 182 MSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELE-FANRDELSSLATHIEQVIAR 240

Query: 207 ISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           ++    +G  I+NG  + I+G +NAGKS+L NAL  ++ AIV+DI GTTRDV+   ++L+
Sbjct: 241 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 300

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISF 316
           G   +  DTAGIR+T+D +E  GI+RTF +++ A +IL + +    +          +  
Sbjct: 301 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWMIDSTDAQRRFEELKADILPH 360

Query: 317 PKNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELINKIK----SILSNKFKKLPF 371
            +    I +  KSD L +T  EE   + +    E L   I+  K    +IL  K  +   
Sbjct: 361 CEGKKMIILFNKSDLLLATQKEELSAIFADMKVEKL--FISAKKRENITILEKKLVQAA- 417

Query: 372 SIPSHKR------HLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKI 419
           ++P   +      ++ H     R L+  S++    GL      D+++E+LR     L +I
Sbjct: 418 ALPEVNQNDIIITNVRHYEALTRALD--SIHRVQEGLQLELSGDLVSEDLRQCIHELSEI 475

Query: 420 T--GCVDVEQLLDIIFSKFCIGK 440
              G +  E+ L  IF  FCIGK
Sbjct: 476 VAEGGITSEETLQNIFQNFCIGK 498


>gi|294775319|ref|ZP_06740842.1| small GTP-binding protein domain protein [Bacteroides vulgatus
           PC510]
 gi|294450896|gb|EFG19373.1| small GTP-binding protein domain protein [Bacteroides vulgatus
           PC510]
          Length = 500

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 155/503 (30%), Positives = 250/503 (49%), Gaps = 75/503 (14%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL------ 56
           ++TI A++T A   AI IIR+SGP   ++    F     KP   +A     FG       
Sbjct: 6   QDTICAIAT-AQGGAIGIIRVSGPKAIEITSRIFTPATGKPLTERAPYTLTFGKICSPKR 64

Query: 57  ------------------------------DGRILDKGLLIVFPSPESFTGEDSAEFHVH 86
                                            ++D+ L+ +F +P S+TGEDS E   H
Sbjct: 65  KINNTLFQQTSEIPQEKSETLQKTSSITSSAEEVIDEVLISLFRAPHSYTGEDSTEIMCH 124

Query: 87  GGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS 146
           G   ++  +++ L      R A PGE+++RAF NGK+DL +AE++ADLI+S +    RL+
Sbjct: 125 GSSYILQQVIQ-LLIYNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSASTHRLA 183

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           M  M G  S       ++L H  S +E +LDFS+ E+++ F++++ L+ +      + + 
Sbjct: 184 MSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELE-FANRDELSSLATHIEQVIAR 242

Query: 207 ISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           ++    +G  I+NG  + I+G +NAGKS+L NAL  ++ AIV+DI GTTRDV+   ++L+
Sbjct: 243 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 302

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFP- 317
           G   +  DTAGIR+T+D +E  GI+RTF +++ A +IL +       +     K    P 
Sbjct: 303 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWMIDSTDTQRRFEELKADILPH 362

Query: 318 -KNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELINKIK----SILSNKFKKLPF 371
            +    I +  KSD L +T  EE   + +    E L   I+  K    +IL  K  +   
Sbjct: 363 CEGKKMIILFNKSDLLLATQKEELSAIFADMKVEKL--FISAKKRENITILEKKLVQAA- 419

Query: 372 SIPSHKR------HLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKI 419
           ++P   +      ++ H     R L+  S++    GL      D+++E+LR     L +I
Sbjct: 420 ALPEVNQNDIIITNVRHYEALTRALD--SIHRVQEGLQLELSGDLVSEDLRQCIHELSEI 477

Query: 420 T--GCVDVEQLLDIIFSKFCIGK 440
              G +  E+ L  IF  FCIGK
Sbjct: 478 VAEGGITSEETLQNIFQNFCIGK 500


>gi|114568076|ref|YP_755230.1| GTPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|122317083|sp|Q0ATU5|MNME_SYNWW RecName: Full=tRNA modification GTPase mnmE
 gi|114339011|gb|ABI69859.1| tRNA modification GTPase trmE [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 459

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 235/467 (50%), Gaps = 47/467 (10%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-------SLRYFFGLDGRI 60
           I A+ST      I+I+RLSG    +  E I K  +   + +       SL +       I
Sbjct: 6   IAAISTAPGEGGIAIVRLSGNDVIEKVERIFKPYRAGIKLSDKEGYSLSLGWLCDEKMEI 65

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL +  +P S+TGED  E + HGG       LE +     +RLA PGEF+RRAF N
Sbjct: 66  IDEVLLGLMRAPRSYTGEDVVEINCHGGTLPARRCLEAVM-WQGVRLAQPGEFTRRAFLN 124

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++D+ +AE++ ++I ++TE    L+++ ++G  S       D++  + + +EA LDF +
Sbjct: 125 GRLDVSQAEAVIEVIRAKTERGMNLALKQLAGRNSQEINLLEDQMIEVNAMLEASLDFPD 184

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E    ++S+ +    +  +KN I   +  G+  EI R G  + I G  N GKSSL NAL 
Sbjct: 185 EVGDLDYSAAQ--GKLQEVKNRIDKLLLAGERAEIYREGINVAICGKPNVGKSSLLNALL 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +K+ AIVT IPGTTRD++   +++ G  VK+ DTAGIR T+D+VE+ GI+R+   +  AD
Sbjct: 243 RKEKAIVTSIPGTTRDIIEDYINIRGIPVKLKDTAGIRSTEDLVERIGIERSQEVISEAD 302

Query: 301 LILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           L+L + ++ +      +K     +  + I +  K DL      E +          LE+L
Sbjct: 303 LVLFILDVGTGIDQEDRKIYEKIEKKNKIVLVNKEDLEEKNISEAE----------LEQL 352

Query: 355 INKI---------------------KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +                     K++LS + +     +  + R    L    R++E +
Sbjct: 353 FPGVKIVRGSIIEETGLEELEESIEKAVLSGQLQSDDMEVMINLRQKNALLTAKRHIEES 412

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                   LD +  ++  A  +LG+I+G    E++++ IF  FCIGK
Sbjct: 413 LAAMGKVSLDCLGVDIWGALEALGEISGKNLKEEVIERIFHDFCIGK 459


>gi|288928132|ref|ZP_06421979.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330966|gb|EFC69550.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 460

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 150/464 (32%), Positives = 245/464 (52%), Gaps = 35/464 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPF----PRKASLRYFFGL 56
           ++++TI A++T ++  A+ +IR+SG     + +  F   K K      P+     +    
Sbjct: 6   NDRQTICALAT-SVGGALGVIRVSGNDAIDIVDHAFKAPKGKKLHALPPQTVQYGHIVDE 64

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ L+  F +P S+TGE+S E   HG   ++N +L+ L ++   R A PGEF++R
Sbjct: 65  GEQTIDEVLVTCFRAPHSYTGENSVEISCHGSAYILNEVLKLLVRL-GCRQAQPGEFTQR 123

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGK+DL +AE++ADLI++      +L++  + G  S       DKL HI S IE +L
Sbjct: 124 AFLNGKMDLSQAEAVADLIAATNRASAQLALGQLRGHFSGELAALRDKLLHITSLIELEL 183

Query: 177 DFSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           DFS++ DV  F+ ++ L  +   ++  I++  +  + G  I+ G  + I+G +N GKS+L
Sbjct: 184 DFSDQ-DV-TFADRQELQALAEEIRTKIATLATSFETGRAIKAGISVAIVGKTNVGKSTL 241

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L K++ AIV+DI GTTRDV+   + + G   +  DTAGIR+T D +E  GI+RT+ +
Sbjct: 242 LNRLLKEERAIVSDIHGTTRDVIEDTIQINGINFRFIDTAGIRKTSDEIESLGIERTYQK 301

Query: 296 VENADLILL-------LKEINSKKEISFPKNIDFIFIGTKSDLYS------TYTEE--YD 340
           +  A ++L        L EI      +  K +  I +  K+D  S      ++TE+  + 
Sbjct: 302 LTEAAIVLWVIDKAPTLSEIEEMNAHTRGKRL--IVVSNKTDAQSFAFPTFSWTEQPTFV 359

Query: 341 HLISSFTG--EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH-LSQTVRYLEMASLNE 397
            + + F    E LE  I    +I       +  +   H   L H L+   R LE  +L  
Sbjct: 360 SVSAKFNTNIETLETCIYNAANIPEIHENDVVVTNVRHYEALSHALASIQRVLEGIAL-- 417

Query: 398 KDCGLDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
            D   D++AE+LR     L +IT G +   ++L  IF  FCIGK
Sbjct: 418 -DLSGDLLAEDLRQCLHFLAEITGGSITSNEVLGNIFRHFCIGK 460


>gi|224063199|ref|XP_002301037.1| predicted protein [Populus trichocarpa]
 gi|222842763|gb|EEE80310.1| predicted protein [Populus trichocarpa]
          Length = 483

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 149/476 (31%), Positives = 239/476 (50%), Gaps = 48/476 (10%)

Query: 7   TIFAV--STGALPSAISIIRLSGPSCFQVCEFICKKKKPF---------PRKASLRYFFG 55
           TI A+  S G  P+++ I+RLSGPS  ++   + K  +           P    + Y   
Sbjct: 14  TIAAIVTSVGGPPASVGIVRLSGPSAVEIAARVFKPMRKKKKKGFCVWKPTSHVVDYGVV 73

Query: 56  LD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           LD  G ++D+ L +   +P S+T ED  E   HG    +  +L    +    RLA PGEF
Sbjct: 74  LDHQGNVVDEVLAVPMLAPRSYTREDVVELQCHGTEVCLRRVLRACIEA-GARLAEPGEF 132

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           + RAF NG++DL +AE++  LISS++      ++ G+ G  +SL      +   + + IE
Sbjct: 133 TLRAFLNGRLDLSQAENVGKLISSKSVAAADAALAGIQGGFASLVKSLRTQCIELLTEIE 192

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF +E  +       +++ I  +  ++ + +      +++++G +I I+G  N GKS
Sbjct: 193 ARLDFDDE--MPPLDLNLIMDKIHSMSENVENALKTANYDKLLQSGLQIAIVGRPNVGKS 250

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NA +K + AIVT+I GTTRD++   + + G  V + DTAGIR TDD+VEK G++R+ 
Sbjct: 251 SLLNAWSKSERAIVTEIAGTTRDIVEASITVGGIPVILLDTAGIRVTDDVVEKIGVERSE 310

Query: 294 LEVENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338
                AD+I+               LL  I SKK+ S       I +  K D   +   E
Sbjct: 311 AVALGADVIVMTVSALDGWTPEDTELLNRIVSKKK-SVGSFTPMILVVNKIDCSPSLCSE 369

Query: 339 Y---------DHLIS-SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           +          H+ + + TG+G+++L   I  I+     K+P        +     Q VR
Sbjct: 370 WVDRGGGSFSKHVFTCAITGQGIQDLEMAISEIVG--LNKIPAGGLKWTVNHRQCEQLVR 427

Query: 389 YLE----MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E    + S  E++  LD    +LR A+++LG+I+G    E++L  IF KFCIGK
Sbjct: 428 MKEALVRLKSSIEEEMPLDFWTIDLRDAALALGQISGENISEEILSNIFGKFCIGK 483


>gi|160946598|ref|ZP_02093801.1| hypothetical protein PEPMIC_00556 [Parvimonas micra ATCC 33270]
 gi|158446982|gb|EDP23977.1| hypothetical protein PEPMIC_00556 [Parvimonas micra ATCC 33270]
          Length = 468

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 246/460 (53%), Gaps = 33/460 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGRIL 61
           TI A++T    S I I+RLSG     + +  F    KK   +K+     +G       ++
Sbjct: 16  TIVAIATATGESGIGIVRLSGEKSIDIVKNFFKPHDKKEIDKKSDRMMKYGHIYDKDELI 75

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ ++    +P ++T E+  E   HGGI  +  +L  L       LA  GEF++RAF NG
Sbjct: 76  DEVMVCFMFAPHTYTRENVVEIFTHGGIVCLKRVLN-LCLENGADLAEKGEFTKRAFLNG 134

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE + DLI ++TE   + ++  + G LS    ++ ++L  I SF+E  ++F+E 
Sbjct: 135 RLDLSQAEGVIDLIKAKTEFSHKSAINQLEGHLSKKIKEFREELLDILSFVEYSINFTE- 193

Query: 182 EDVQNFSSKEVLNDILFLKND-----ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
            D+Q    +E+  D + LK +     +   + +   G+I+++G  + I+G  N GKSSL 
Sbjct: 194 -DMQ----EELPFDNVILKTEKLMAEMEELLGESNKGKILKDGINVSIIGKPNVGKSSLL 248

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N + +++ AIVTDI GTTRD++  D++L G  + I+DTAGIR+T D+VEK G++++    
Sbjct: 249 NRILRQERAIVTDIAGTTRDLIKEDIELSGIKLNINDTAGIRDTADVVEKIGVQKSIEAS 308

Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-------YDHL- 342
           EN+DL L+L    +E++ + E  I+       I I  K DL     EE       ++ + 
Sbjct: 309 ENSDLNLVLFDISRELDEEDEKIINLANTTKSIGILNKVDLDKKLNEEKLKEKVNFELIE 368

Query: 343 ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400
           IS+   EG+ +L   I  +    K +    ++ ++ RH   L  ++ YL+    + K+  
Sbjct: 369 ISALKNEGISKLEQAIIDMFFDGKIEIKDKALITNVRHENSLKSSLEYLKSFYADLKNMV 428

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D    +LR A   LG+I G    E +LD IFS FCIGK
Sbjct: 429 PIDCCEVDLRRAYEVLGEIIGENISENILDNIFSNFCIGK 468


>gi|326804314|ref|YP_004322132.1| tRNA modification GTPase TrmE [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650573|gb|AEA00756.1| tRNA modification GTPase TrmE [Aerococcus urinae ACS-120-V-Col10a]
          Length = 466

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 254/462 (54%), Gaps = 33/462 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG--LDGRI-- 60
           +TI A+ST     AI I+RLSG     + + + +   K    + S    +G  +D +   
Sbjct: 11  DTIAAISTAPGEGAIGIVRLSGDQALAIADTVYQMGTKQLANQDSHTIHYGHIVDPQSEQ 70

Query: 61  -LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+ ++ V  +P+++T ED  E + HGG+   + IL+ L      R+A PGEF++RAF 
Sbjct: 71  ELDEVMVTVLRAPKTYTREDIVEINCHGGMVATDRILQ-LVLREGARMAEPGEFTKRAFL 129

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF- 178
           NG+IDL +AE++ D+I S+T+     +M+ + G+LS+      ++++     +E ++D+ 
Sbjct: 130 NGRIDLTQAEAVQDMIRSKTDRSMDQAMKQLDGKLSTKISTLRNRISDAMVQVEVNIDYP 189

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
             EE+       +   D +  + ++   ++  K G+I+R+G +  I+G  N GKSSL N 
Sbjct: 190 EYEEEEMTLELLDQTADTI--QAELQRLLTTAKQGKILRDGIETAIIGRPNVGKSSLLNH 247

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++D AIVTDI GTTRD +   ++L G  +K+ DTAGIR+T+D+VEK G++R+   +E 
Sbjct: 248 LLREDKAIVTDIEGTTRDTIEEYVNLRGVPLKLVDTAGIRDTEDVVEKIGVERSRKAMEE 307

Query: 299 ADLILLL------KEINSKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLIS 344
           ADL+LL+       +   ++ ++  K+ + I +  K+DL         + Y ++ + + +
Sbjct: 308 ADLVLLILNQSEPLQAMDRELLTMTKDSNRIILLNKTDLDPALSLDDLADYADKEEIIKT 367

Query: 345 SFT-GEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL----EMASLNEK 398
           S T  +G+++L  +I  +  S +      +  S+ RH+  L +  + +    E  SL   
Sbjct: 368 SITQDQGVDDLEERISQLFFSGQTGDRDATYVSNTRHIDLLQKASQAIAEAKEAISLG-- 425

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D+I  +   A   LG+ITG    ++L+  +FS+FC+GK
Sbjct: 426 -TPVDLIQIDFNRAFEFLGEITGENAPDELITKLFSQFCLGK 466


>gi|206895094|ref|YP_002246517.1| tRNA modification GTPase TrmE [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737711|gb|ACI16789.1| tRNA modification GTPase TrmE [Coprothermobacter proteolyticus DSM
           5265]
          Length = 431

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 149/445 (33%), Positives = 233/445 (52%), Gaps = 25/445 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           E I A++T     A+ +IR+SG +     E    K    PR ASLRYF     ++ D+ +
Sbjct: 2   EPIVALATPWGVGALHVIRISGDASKNTVEAFLDKPLQKPRHASLRYFSS--EKVEDQVV 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I +  P S+TGE+  E   HG  A+   I+E L     ++ A PGEF+ RAF NGK+DL
Sbjct: 60  AIWYSEPHSYTGEEMVEIMCHGNPAIAELIIETLLDA-GMKPAQPGEFTFRAFLNGKMDL 118

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ DLI + +    +     + G+LS       +K+ ++ +F++A +DF E  DV+
Sbjct: 119 TQAEAVNDLILARSTELLKAGENTLKGKLSDRIASLRNKVLNVLAFLQAAMDFPE--DVE 176

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S +E L +IL    D+   I   K  EI+R G  +VI G  N GKSSL NAL   + +
Sbjct: 177 ESSIEEQLREILVETEDL---IESAKTAEILRKGISLVIAGRPNVGKSSLMNALVGMERS 233

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+ IPGTTRD +     L    V + DTAG+R TDD +E+EG+K     +E ADL++ L
Sbjct: 234 IVSQIPGTTRDYIEQYTVLGKIPVNVVDTAGLRHTDDPIEQEGVKLALRRIEEADLVIFL 293

Query: 306 KEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYD--HLISSFTGEGLEELINK 357
            + ++      K+  +  +    I +G K D      E++   + +S+    G++ +I  
Sbjct: 294 YDASTGWTDEDKQMFNLIQEEKTIVVGNKID-KGKGNEQHPKAYFVSAKEKTGIDRIIEA 352

Query: 358 IKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           I  +++  +  KL  S    +R +  L +T+  +  A L       ++ A++L  A  +L
Sbjct: 353 IHQLMNITEPPKLLVS----QRQMGLLEKTLGDVHDA-LEHLSVYAEVAADDLFSALRNL 407

Query: 417 GK-ITGCVDVEQLLDIIFSKFCIGK 440
              I G V+ E LL  +FS FCIGK
Sbjct: 408 TTLIDGDVE-EDLLSTVFSNFCIGK 431


>gi|19703358|ref|NP_602920.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|25009491|sp|Q8RHA2|MNME_FUSNN RecName: Full=tRNA modification GTPase mnmE
 gi|19713420|gb|AAL94219.1| Thiophene and furan oxidation protein THDF [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 455

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 149/459 (32%), Positives = 242/459 (52%), Gaps = 31/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61
           +TI A+ST      ISI+R+SG     + E I K   KK    +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFKPKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ EE
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSILDLAAHINVVLDYPEE 182

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   + ++ ++     +I   +S    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 183 -GIDDPVPENLVENLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           IL + +               IN+ K I     ID   I  + +L      E    IS+ 
Sbjct: 302 ILYVIDTSREIDEEDFRIYDIINTDKVIGILNKID---IKKEINLSKFPKIEKWIEISAL 358

Query: 347 TGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           +  G++ L N+I   + N+      +KL  +   HK  L   ++ +  L +    +    
Sbjct: 359 SKLGIDNLENEIYKYIMNENIEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMGLP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++A +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|75761491|ref|ZP_00741455.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74491030|gb|EAO54282.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 332

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 187/307 (60%), Gaps = 7/307 (2%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +  + I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKDLTEVP-SHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+   ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLL 305
           ADL+L++
Sbjct: 300 ADLVLVV 306


>gi|313671977|ref|YP_004050088.1| tRNA modification gtpase trme [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312938733|gb|ADR17925.1| tRNA modification GTPase TrmE [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 437

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 142/441 (32%), Positives = 229/441 (51%), Gaps = 11/441 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A  T  + SA+ ++R+SG    +V +          R  +  Y+      + D  +
Sbjct: 2   DTIVAPITPLINSAVIVVRISGDDALKVLKLFDISNLEHRRVYNATYY---GSEVRDDVI 58

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L  F +P S+TGED  E   HG   +V+  + +  K+   R A PGEF++R F NGKIDL
Sbjct: 59  LTFFKAPNSYTGEDVLEVSFHGNPLIVSSFISDCYKL-GFRFAEPGEFTKRRFLNGKIDL 117

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AES+ DLI+S+++   + S   ++G L       I K+  I S IEA ++F EEE  Q
Sbjct: 118 SQAESILDLINSKSKYSIQFSYNTLTGALKKRVDSIISKMVDIGSVIEAFIEFPEEELDQ 177

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           + S   + ++I  + N++S+ IS     +  + G+ +VI G  N GKSSL N L  ++ +
Sbjct: 178 S-SFDNLYHEIELISNEVSTLISNYNTIQHYKTGFAVVIAGKPNVGKSSLLNFLLSQERS 236

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+DIPGTTRD +    +L G  +K+ DTAG+R + D +EK GI R+   +++ADL+++L
Sbjct: 237 IVSDIPGTTRDYILEYANLGGIPIKLIDTAGVRSSSDTIEKLGIDRSLEMIQHADLVIVL 296

Query: 306 KEINSKKE-----ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
            + +S  +     +   K+   +    K DL +    E+D   S      +++++ KI  
Sbjct: 297 LDASSFDDEDRYILDITKDKTRLIFVNKVDLVANLDIEHDLAFSLKYSIDVDKIVPKITE 356

Query: 361 ILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
            LS       + S+  + RHL      +  L           LDI A  L+ +   L +I
Sbjct: 357 KLSLSDSDSAYTSVLINDRHLTLFKDFLSCLNSLVNGLTSLDLDIAAFELQQSLNILYEI 416

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG    + +L+ IF +FCIGK
Sbjct: 417 TGERYTDSILNNIFERFCIGK 437


>gi|296328796|ref|ZP_06871310.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154131|gb|EFG94935.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 455

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 149/459 (32%), Positives = 242/459 (52%), Gaps = 31/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61
           +TI A+ST      ISI+R+SG     + E I K   KK    +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFKPKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ EE
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   + ++ ++     +I   +S    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 183 -GIDDPVPENLVENLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           IL + +               IN+ K I     ID   I  + +L      E    IS+ 
Sbjct: 302 ILYVIDTSREIDEEDFRIYDIINTDKVIGILNKID---IKKEINLSKFPKIEKWIEISAL 358

Query: 347 TGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           +  G++ L N+I   + N+      +KL  +   HK  L   ++ +  L +    +    
Sbjct: 359 SKLGIDNLENEIYKYIMNENIEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMRLP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++A +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|320530991|ref|ZP_08032023.1| tRNA modification GTPase TrmE [Selenomonas artemidis F0399]
 gi|320136740|gb|EFW28690.1| tRNA modification GTPase TrmE [Selenomonas artemidis F0399]
          Length = 462

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 151/463 (32%), Positives = 236/463 (50%), Gaps = 25/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF------PRKASLRYFF 54
           M  E++TI  ++T      I I+R+SG     V   + +  +        P  A   +  
Sbjct: 2   MRGERDTISQIATPPGAGGIGIVRVSGADALHVARAVFRPARGGRLEGIEPYTARYGHIV 61

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             DG ++D+ +L+   +P S+TGED+AE   HGG  V+  +L    +    R A  GEF+
Sbjct: 62  AADGTVIDECVLLYMRAPHSYTGEDTAELQCHGGTLVLREVLLRTWEA-GARPAEAGEFT 120

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL  AE + +LIS+++    R + E M+G L+        +L    + IEA
Sbjct: 121 KRAFLNGRLDLSRAEGVMELISAKSARAVRAARERMAGALAEKIAGIRTRLLGAIAHIEA 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF E+ D+    +  +  DI     D++  +     G I+R G K VI+G  N GKSS
Sbjct: 181 GIDFPED-DIPEARTGALAADIAAASADVARLLEGADAGRILREGMKTVIVGRPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL   + AIVTD+PGTTRDV+   + +EG  +++ DTAG+R  +D VE+ G+ RT  
Sbjct: 240 LLNALLGMERAIVTDVPGTTRDVIEEQIVIEGIPLRLLDTAGLRAAEDAVEQIGVARTQR 299

Query: 295 EVENADLILLL----KEINSKKE--ISFPKNI--DFIFIGTKSDLYSTYT-EEYDHL--- 342
            + +A+L+L +      +  + E  I   +N   + I +  K D  S  T  ++  L   
Sbjct: 300 HLADAELVLAVFDGAAPLTPEDEDLIVRLRNCAAEMIILCNKEDRDSVLTAADFSMLDAP 359

Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
              IS+  G GL++L   I  I+      L   ++P+ +R    L +   +L  A     
Sbjct: 360 VLVISAQAGTGLDDLRRAIAEIVRRMEGDLGDGALPNVERETEALRRAAEHLRTAQETLA 419

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D G D ++ +LR A   LG+I G      L+D IFS+FCIGK
Sbjct: 420 ADMGTDFVSIDLRAAYEILGEILGETADTDLIDKIFSEFCIGK 462


>gi|281423258|ref|ZP_06254171.1| tRNA modification GTPase TrmE [Prevotella oris F0302]
 gi|281402594|gb|EFB33425.1| tRNA modification GTPase TrmE [Prevotella oris F0302]
          Length = 454

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 144/464 (31%), Positives = 241/464 (51%), Gaps = 44/464 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL---DGRI 60
           TI A++T A   AI I+R+SG    ++ + +     K+     K +  ++  +    G I
Sbjct: 5   TICALATSA-GGAIGIVRVSGDKATEITDRVFSGIGKRSLLEAKGNTVHYGEIHDQQGNI 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ VF +P S+TGED  E   HG   V++ +++ L      R A PGEF++RA+ N
Sbjct: 64  IDEVLVSVFRAPHSYTGEDCTEISCHGSTYVLSQVVKVLID-AGCRQAAPGEFTKRAYLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI+S  +   +L++  + G  SS   +  ++L  I S +E +LDFS+
Sbjct: 123 GKMDLSQAEAVADLIASTNKASHKLALSQLKGHFSSELSRLREQLLKITSLLELELDFSD 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+++     E+      +   I++ I   + G  ++ G  + I+G +N GKS+L N L 
Sbjct: 183 HEELEFADRSELKTLAEKIHERIATLIHSFETGNALKKGIPVAIIGKTNVGKSTLLNCLL 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIV++I GTTRDV+    +++G   +  DTAGIRET D+VE+ GI+R + ++  A 
Sbjct: 243 HEDKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTAGIRETKDVVEQLGIERAYKKISEAT 302

Query: 301 LILLL-------KEINSKKEISFPKNI----------DFIFIGTKSDLYSTYTEEYDHLI 343
           ++L +       +E     +++  K +          DF  I   S  +  Y       I
Sbjct: 303 IVLWVADEQPTTEEYTEIHQLTAEKKLLLVFNKMDRKDFKPITINSKFHVIY-------I 355

Query: 344 SSFTGEGLEEL---INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKD 399
           S+   + + EL   I ++  I       +  +   H   L H + ++ R +E       D
Sbjct: 356 SAKHKQNMAELETAIYEVADIPEITENSIIVTNARHYEALVHANDSILRVIEAM-----D 410

Query: 400 CGL--DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
            GL  D+I+E+LRL    L +ITG  +   ++L  IF  FCIGK
Sbjct: 411 TGLSGDLISEDLRLCLEQLAEITGGQITTNEVLGNIFKHFCIGK 454


>gi|323700635|ref|ZP_08112547.1| tRNA modification GTPase TrmE [Desulfovibrio sp. ND132]
 gi|323460567|gb|EGB16432.1| tRNA modification GTPase TrmE [Desulfovibrio desulfuricans ND132]
          Length = 463

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 144/464 (31%), Positives = 232/464 (50%), Gaps = 30/464 (6%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFG--LDG 58
            H ++TI A++T      + IIR+SGP    +   + +     F   A  R   G  +D 
Sbjct: 5   RHAQDTIAAIATPPGDGGVGIIRISGPRARAIARALFRPAVASFTDFAPYRLHHGRVVDA 64

Query: 59  R--ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           R  +LD  L    P P S+TGED  E + HGG  V+  +L+E       RLA  GEF+ R
Sbjct: 65  REAVLDDVLCAFMPGPNSYTGEDVVELNCHGGRTVLAAVLQECLDR-GARLAERGEFTYR 123

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF +G++DL +AE++A++I + T+    L+   +SG L         +L  +R+ +   +
Sbjct: 124 AFMHGRMDLSQAEAVAEMIHAPTKAALHLAQVKLSGLLGRRIADLRARLEGLRAQLAVAV 183

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF +EE ++  S  E+   +  ++ DI+  +         R G  +V+ G  NAGKSSL 
Sbjct: 184 DFPDEE-LECLSPDELAGTVEAVRADIAGLLRAVDRTRAWREGALVVLAGRVNAGKSSLM 242

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  ++ AIVTD PGTTRD L   L+L+G  ++++DTAG+R TDD VE  G++      
Sbjct: 243 NALLGRNRAIVTDRPGTTRDYLEETLNLDGLSIRLADTAGMRATDDAVEAAGLEMGRELR 302

Query: 297 ENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHL-- 342
           + A L+LLL         + +++ + +   K +  +    K+DL +   T   +   L  
Sbjct: 303 DRAALVLLLLDGTAAADAETLDAARRMGPDKGLAVL---NKADLDAFDETGGAQLAALGF 359

Query: 343 ----ISSFTGEGLEELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVR-YLEMASLN 396
               +S+ TG GL+ L  +I+  +L    +  P  +  + R    L++  R    +A+  
Sbjct: 360 ETLAVSAKTGAGLDRLAARIRERVLRGAGQPDPDELAPNARQAAVLAEADRELAGLAADA 419

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 D+++  L  A   L  ITG +    +L+ IF  FCIGK
Sbjct: 420 GAGIPYDLLSVRLETACDVLASITGEIAANDVLNAIFDTFCIGK 463


>gi|224418482|ref|ZP_03656488.1| tRNA modification GTPase TrmE [Helicobacter canadensis MIT 98-5491]
 gi|253827795|ref|ZP_04870680.1| tRNA modification GTPase [Helicobacter canadensis MIT 98-5491]
 gi|313142012|ref|ZP_07804205.1| tRNA modification GTPase TrmE [Helicobacter canadensis MIT 98-5491]
 gi|253511201|gb|EES89860.1| tRNA modification GTPase [Helicobacter canadensis MIT 98-5491]
 gi|313131043|gb|EFR48660.1| tRNA modification GTPase TrmE [Helicobacter canadensis MIT 98-5491]
          Length = 461

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 142/464 (30%), Positives = 242/464 (52%), Gaps = 38/464 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGRILDK 63
           +TI A +T    S++++IRLSG     +   + K        R A L   +  +G +LD+
Sbjct: 7   QTIVAPATTYGKSSLNVIRLSGQDSLLIASKLAKVNPNHFKVRYAKLTKIYFQNGELLDE 66

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            +LI F +P S+T ED  EF  HGG  +   ILEE  K+   RLA PGEF++RAF  G+I
Sbjct: 67  CILIYFKAPHSYTTEDVIEFQCHGGTFIAQSILEECIKL-GARLAKPGEFTKRAFLGGRI 125

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +A+++A LI S      ++ M  ++GE+ S        L  + +  E  +D+++E  
Sbjct: 126 DLSQAQAIAKLIESSNANAHKMLMRHLNGEMYSFCENLRKNLLTLLAHSEVFIDYADEAL 185

Query: 184 VQNFSSKEVLN----DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            Q+   + +LN     +  L+N +   I +  L E    GY++ I+G  N GKSSL NAL
Sbjct: 186 PQDLM-ENLLNRLDSTLQTLQNLLEQSIQKKSLFE----GYRLCIIGKPNVGKSSLLNAL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIV+DI GTTRD +  +  LEG+L+++ DTAGIR++ DI+E +GI+R+  + E +
Sbjct: 241 LHEDRAIVSDIAGTTRDSIEENFLLEGHLLRLIDTAGIRQSQDIIETKGIERSLQKAEQS 300

Query: 300 DLILLLKEINSKKE----------ISFPKNIDFIFIGTKSDLYSTYTEEY---------- 339
           D+++ L + +   E           ++  +   I +  K+DL  ++  +           
Sbjct: 301 DILIALFDSSRPLEEEDLKIIEILKTYQDSKKIIVLLNKTDLKGSFDTQILAPFNPLNLC 360

Query: 340 ---DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
              D+L S+     L    N + S+L+++       + S +     +   ++ L  + L 
Sbjct: 361 LKDDNLASN--NSLLSHFKNHLISLLNSQESSQMLLLVS-QYQFQAIQACIQALYDSKLP 417

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++  L++ + ++  A  +L  IT   +  Q+LD++FS FC+GK
Sbjct: 418 LENGELELFSFHINEALKALASITKPYEYSQMLDVMFSDFCLGK 461


>gi|295320975|gb|ADG01353.1| tRNA modification GTPase TrmE [Clostridium botulinum F str. 230613]
          Length = 301

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/300 (39%), Positives = 180/300 (60%), Gaps = 17/300 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFF 54
            E +TI AV+T      ISIIR+SG     +   I K K        KP+    S+RY F
Sbjct: 2   KEFDTIAAVATPVGEGGISIIRISGDKSLDIVSSIFKGKNDRTLDDIKPY----SMRYGF 57

Query: 55  GLDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
            ++     ++D+ L+     P SFT ED+ E + HGG+     IL+EL K    RLA PG
Sbjct: 58  IIEKESKEMIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIK-SGARLAEPG 116

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF++RAF NG+IDL +AE++ D+I S+T++  + +++   G LS       +++  I + 
Sbjct: 117 EFTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKIIAH 176

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           IEA +D+ E+ D++  + +++  D+  + N I + IS  + G+I+R G   VI+G  N G
Sbjct: 177 IEATVDYPED-DLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVG 235

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NAL  ++ AIVT+IPGTTRDV+   ++++G   KI DTAGIRET+D+VEK   ++
Sbjct: 236 KSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPTKIVDTAGIRETEDVVEKNWCRK 295


>gi|37572951|dbj|BAC98601.1| putative tRNA modification GTPase trmE [Oryza sativa Japonica
           Group]
          Length = 552

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 149/479 (31%), Positives = 245/479 (51%), Gaps = 58/479 (12%)

Query: 7   TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKKKK----PF-PRKASLRYFFGLD-- 57
           TI A+ T  G  P+A+ I+RLSGP    V   + +  +    P+ PR   + Y   LD  
Sbjct: 87  TIAAIVTSLGGGPAAVGIVRLSGPDAAAVAGRVFRPARRAAPPWRPRSHFVEYGVALDRD 146

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ++D+ L++   +P S+T ED  E   HG    +  +L    +    RLA+PGEF+ RA
Sbjct: 147 GGVIDEVLVVPMLAPRSYTREDVVELQCHGNDLCLRRVLRACLEA-GARLADPGEFTVRA 205

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE+++ LIS+++      ++ G+ G  S+L      +   + + IEA LD
Sbjct: 206 FLNGRLDLAQAENVSRLISAKSAAAADSALAGIQGGFSALVKSLRSRCIELLTEIEARLD 265

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F  E+++       +++ I  ++ ++   +      +++++G ++ I+G  N GKSSL N
Sbjct: 266 F--EDELPPLDLTMLVSKINGMRQEVQDALDTANYDKLLQSGLQVAIIGRPNVGKSSLLN 323

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           A +K + AIVT+I GTTRDV+  ++ + G  + + DTAGIRETDDIVEK G++R+     
Sbjct: 324 AWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGIRETDDIVEKIGVERSEAAAL 383

Query: 298 NADLILL-LKEIN---------------SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYD 340
            ADLI++ +  ++               SKK    P  +  + +  K D     + E+++
Sbjct: 384 GADLIIMTISAVDGWTEDDTKLIEHVLISKKSSGAP--VPMVLVINKVDCAPFISGEQFE 441

Query: 341 HLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR----------HLY 381
                F         TG+G+ EL   I  +   +       +PS  R           L 
Sbjct: 442 QFHGVFKKHVQTCAVTGKGISELEKAIIEVRGLE------PVPSEGRRWTVNQRQFEQLL 495

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              Q    LE +S+NE+   +D    +LR A+++L  I+G    E++L  IFSKFCIGK
Sbjct: 496 RTQQAFTRLE-SSINEQ-LPMDFWTIDLREAALALATISGEDISEEVLSSIFSKFCIGK 552


>gi|255532210|ref|YP_003092582.1| tRNA modification GTPase TrmE [Pedobacter heparinus DSM 2366]
 gi|255345194|gb|ACU04520.1| tRNA modification GTPase TrmE [Pedobacter heparinus DSM 2366]
          Length = 456

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 163/466 (34%), Positives = 248/466 (53%), Gaps = 45/466 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--DGRI-LD 62
           ETI A+ST     AI +IRLSG     +   +   K     +AS    FGL  DG I +D
Sbjct: 5   ETIVALSTPPGLGAIGVIRLSGKDAIAITNSVFSGKNLLA-QASHTIHFGLIKDGDIVID 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+ +F +P+S+T E+  E   HG   ++  I+  L +      A PGEF+ RAF NG 
Sbjct: 64  EVLVSLFVAPKSYTKENVVEISCHGSNYIIQQIINLLIR-KGASAAKPGEFTLRAFLNGG 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLISS++     ++M  + G  S+      ++L H  S IE +LDF+EE 
Sbjct: 123 LDLSQAEAVADLISSDSAAAHSVAMNQLRGGFSTELNVLREQLIHFASMIELELDFAEE- 181

Query: 183 DVQNFSSK----EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           DV+ F+++    E++N I  + N +   I   +LG +I+ G   VI G  NAGKS+L NA
Sbjct: 182 DVE-FANRGQLQELINKITLVLNKL---IRSFELGNVIKMGINTVIAGRPNAGKSTLLNA 237

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV-E 297
           L  +D AIV++I GTTRD +   L++ G   ++ DTAGIRE  D +E  G+++T  ++ +
Sbjct: 238 LLNEDRAIVSEIAGTTRDTIEEVLNINGINFRLIDTAGIREATDAIEVIGVEKTMQKISQ 297

Query: 298 NADLILLLKEIN-SKKEI-----SFPK-NIDFIFIGTKSDLYSTYTEEYDHL-------- 342
           +A L+ L   +N S  E+     S  K  I FI +  K DL  +Y++    L        
Sbjct: 298 SAVLVYLFDVVNISATEVRDDILSLHKPGIAFIAVANKMDL--SYSDRLKELKLPSDISF 355

Query: 343 --ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
             IS+   + +E+    +  I          ++ ++ RH+  L +T      A+LN    
Sbjct: 356 ISISAKEHQNIEDFKQLLYEIAVGDKLSDNHTMVTNIRHVEALEKT-----RAALNNVAE 410

Query: 401 GL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           GL      D +A +++ A   LG ITG V  + LL+ IFSKFCIGK
Sbjct: 411 GLRNPVTSDFLAMDIKQALHYLGLITGVVSTDDLLENIFSKFCIGK 456


>gi|262066862|ref|ZP_06026474.1| tRNA modification GTPase TrmE [Fusobacterium periodonticum ATCC
           33693]
 gi|291379413|gb|EFE86931.1| tRNA modification GTPase TrmE [Fusobacterium periodonticum ATCC
           33693]
          Length = 455

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 148/461 (32%), Positives = 244/461 (52%), Gaps = 35/461 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLDG-RIL 61
           +TI A+ST      ISI+R+SG     + E  F  K KK    K  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRAKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +L+ + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEQVLQVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ EE
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   + +++++     +I   IS    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 183 -GIDDPVPENLVDNLKKASAEIKDLISSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--IS 344
           IL + +               IN+ K I     ID      K ++  +   + D    IS
Sbjct: 302 ILYVIDTSREIDEEDFRIYDIINTDKVIGILNKIDI-----KKEIDLSKFPKIDKWIEIS 356

Query: 345 SFTGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           + +  G++ L ++I   + N+      +KL  +   HK  L   ++ +  L +    +  
Sbjct: 357 ALSKIGIDNLEDQIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMG 414

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++A +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 415 LPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|256027561|ref|ZP_05441395.1| tRNA modification GTPase TrmE [Fusobacterium sp. D11]
 gi|289765520|ref|ZP_06524898.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D11]
 gi|289717075|gb|EFD81087.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D11]
          Length = 455

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 148/459 (32%), Positives = 241/459 (52%), Gaps = 31/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61
           +TI A+ST      ISI+R+SG     + E I +   KK    +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRPKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ EE
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKITTIKKSVLDLAAHINVVLDYPEE 182

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   + ++ ++     +I   +     G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 183 -GIDDPVPENLVENLKKASAEIKDLVLSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDI+E  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENIGVEKSKELINSADL 301

Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           IL + +               IN+ K I     ID   I    DL      E    IS+ 
Sbjct: 302 ILYVIDISREIDEEDFRIYDIINTDKVIGILNKID---IKKDIDLSKFPKIEKWVEISAL 358

Query: 347 TGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           +  G++ L N+I   + N+      +KL  +   HK  L   ++ +  L +    +K   
Sbjct: 359 SKIGIDNLENEIYKFIMNENIEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDKGFP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++A +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|239908445|ref|YP_002955187.1| putative tRNA modification GTPase TrmE [Desulfovibrio magneticus
           RS-1]
 gi|239798312|dbj|BAH77301.1| putative tRNA modification GTPase TrmE [Desulfovibrio magneticus
           RS-1]
          Length = 463

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 139/459 (30%), Positives = 218/459 (47%), Gaps = 26/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRYFFGLDGRI 60
           +TI AV+T      + IIR+SGP+   + E + +  +P      P +     F    GR+
Sbjct: 7   DTIAAVATPPGRGGVGIIRVSGPAARDIAEKLFRSPRPDFSGLRPYRLHHGTFHAPGGRL 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+    P P S+TG+D+AE   HG  AV+  +L     +   R A  GEF++RAF N
Sbjct: 67  LDEGMAAFMPGPGSYTGQDTAELFCHGSPAVLAAVLGAAYAL-GARPAEAGEFTKRAFLN 125

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++A+LI++   +Q  L++  ++G +     +    L  + + I   +DF E
Sbjct: 126 GRLDLSQAEAVAELIAARGAVQADLALNRLTGGMGEAARELGQALADLLAGICLAVDFPE 185

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE V+    +   + +      I + +  G+     R G  + + G  NAGKSSLFNAL 
Sbjct: 186 EE-VECLPREAFADGVAAAVARIDALLEAGQRAAPYRQGATVALFGKVNAGKSSLFNALL 244

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVT +PGTTRD L   LDL+G  V+++DTAG+R TDD +E  G KR   +   A 
Sbjct: 245 GTDRAIVTALPGTTRDYLEESLDLDGLPVRLTDTAGLRATDDAIEDMGKKRGLEKARRAT 304

Query: 301 LIL-----------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
           L L                 +L E+   K ++     D                     +
Sbjct: 305 LGLYVVDGSTPFAPDPEAEAVLAELGPGKVLAVATKADLPPAEPAPLAALAGRGIRGVAV 364

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402
           SS TG GL  L+  I+++L+ +        P+            R    A   +   G+ 
Sbjct: 365 SSRTGHGLTGLVAAIRAMLTAENGPPEPDTPAPSDREAAALSAARAELAALAEDIASGIP 424

Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D++   L  A+  +  ITG    + +L+ +F +FCIGK
Sbjct: 425 YDLMGVRLETAAGLVADITGETTPDDVLNAVFDRFCIGK 463


>gi|310830137|ref|YP_003962494.1| tRNA modification GTPase TrmE [Eubacterium limosum KIST612]
 gi|308741871|gb|ADO39531.1| tRNA modification GTPase TrmE [Eubacterium limosum KIST612]
          Length = 458

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 147/454 (32%), Positives = 252/454 (55%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG-----LD 57
           ++TI AV+TG   + I IIR+SGP    +    F+    K      S +  +G      D
Sbjct: 8   EDTIAAVATGLGGAGIGIIRVSGPEAVDIVTRLFVNHAGKTVEGAESHKLLYGNILEPED 67

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+I+D+ L+     P S+T ED  E + HGGI  +  IL+ + +    RLA PGEF++RA
Sbjct: 68  GKIIDEVLVSKMKGPFSYTAEDVVEINCHGGIVSLKRILDAVIR-SGARLAEPGEFTKRA 126

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ D+IS++TE     S+  + G+LS       D L  + + +EA++D
Sbjct: 127 FLNGRLDLAQAEAVMDIISAKTEKSLEYSVGQLEGKLSQRLTAIDDLLIDVMANVEANID 186

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D++  ++  +   I    + +   +   + G+I R G    ILG  N GKSSL N
Sbjct: 187 YPEY-DIEEVTAAYLNAHIHQAMDMVDMLLKASETGKIYREGITTAILGEPNVGKSSLLN 245

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ AIVT+IPGTTRD++   +++ G   KI DTAGIRETD++VE+ G++++   ++
Sbjct: 246 TLLMENKAIVTEIPGTTRDIIEEYINIGGIPFKIIDTAGIRETDNLVEQIGVEKSRQLIK 305

Query: 298 NADLILLLKEIN---SKKEISFPKNID---FIFIGTKSD--LYSTYTEEYDHLISSFTGE 349
           N +LIL + +++   S++E +  + +D    IFI  K+D  + +    E    +S    E
Sbjct: 306 NTNLILFMTDLSRPFSEEEKTLIEELDPSKTIFIANKTDSMIENRDVPEGWLPLSLKEDE 365

Query: 350 GLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIA 406
           G+E L +K ++ ++     +    I ++ RH++ L + +  L+ A L   D G  L++++
Sbjct: 366 GVEALKDKMLEMVMGGSVDQEADYIVNNVRHVHLLEEAMACLKNA-LGTIDMGMPLELVS 424

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++     + +ITG      +++ IF  FCIGK
Sbjct: 425 IDIQDGLEKIREITGRSVGSDIINQIFKNFCIGK 458


>gi|225459366|ref|XP_002285809.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|302141924|emb|CBI19127.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 153/480 (31%), Positives = 241/480 (50%), Gaps = 53/480 (11%)

Query: 7   TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKKKKP-------------FPRKASLR 51
           TI A+ T  G  PSA+ I+RLSGP    +   + +  +               P    + 
Sbjct: 99  TIAAIVTSLGGPPSAVGIVRLSGPEAVAIVARVFRPARRNKGKTLGSGSGSWRPTSHVVE 158

Query: 52  YFFGLD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109
           Y   LD  G ++D+ L I   +P S+T ED  E   HG    +  +L    +    RLA 
Sbjct: 159 YGVVLDHHGNVVDEVLAIPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLES-GARLAE 217

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+ RAF NG++DL +AE++  LIS+++      ++ G+ G  SSL      +   + 
Sbjct: 218 PGEFTLRAFLNGRLDLSQAENVGKLISAKSIAAADAALAGIQGGFSSLVRSLRIQCIELL 277

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           + IEA LDF +E  +       +++ I  +  D+ + +      +++++G +I I+G  N
Sbjct: 278 TEIEARLDFDDE--MPPLDLNLIMDKIHSMSQDVENALETANYDQLLQSGLQIAIIGRPN 335

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKSSL NA +K + AIVT+I GTTRDV+   + + G  V + DTAGIRETDDIVEK G+
Sbjct: 336 VGKSSLLNAWSKSERAIVTEIAGTTRDVVEASVSIHGIPVTLLDTAGIRETDDIVEKIGV 395

Query: 290 KRTFLEVENADLILLL----------------KEINSKK--EISFPKNIDFIFIGTKSDL 331
           +R+     +AD+I++                 + I++KK  E S P     I +  K D 
Sbjct: 396 ERSEAVAISADVIIMTISALDGWTSQDTKLFNRIISNKKFVESSTP----VILVVNKIDC 451

Query: 332 YSTYTEEY--------DHLIS-SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLY 381
             +   E          H+ + + TG+G+ +L + I  I+  NK          ++R   
Sbjct: 452 APSACTELFMEGNSFSKHIFTCAVTGQGISDLESAIIEIVGLNKIPAGGRRWTVNQRQCE 511

Query: 382 HLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L +T   L  + S  E++  LD    +LR A+++LG+I+G    E++L  IF KFCIGK
Sbjct: 512 QLVRTKEALARLISSIEEEMPLDFWTIDLREAALALGQISGEDISEEVLTNIFGKFCIGK 571


>gi|295425821|ref|ZP_06818502.1| tRNA modification GTPase TrmE [Lactobacillus amylolyticus DSM
           11664]
 gi|295064514|gb|EFG55441.1| tRNA modification GTPase TrmE [Lactobacillus amylolyticus DSM
           11664]
          Length = 461

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 249/467 (53%), Gaps = 42/467 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD-- 57
           E +TI A+ST      ISI+R+SG    ++   + K     K P     ++ Y   +D  
Sbjct: 7   EFDTIAAISTPIGEGGISIVRMSGEDAVKIANQVFKGADLTKVP---THTIHYGHIIDPD 63

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ ++ V  +P++FT ED  E + HGGI V N +L+ L      R+A+PGEF++R
Sbjct: 64  TNKTIDEAMVTVLRAPKTFTREDIIEINCHGGIVVTNHVLQ-LLLAHGARMADPGEFTKR 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFI 172
           AF NG+IDL +AES+ D++ ++T+  R++++  ++G    ++ ++  + +D L ++    
Sbjct: 123 AFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLMHKIRAMRKEILDTLANV---- 178

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E ++D+ E  D    ++K++ +    +   I   +   + G I+RNG    I+G  N GK
Sbjct: 179 EVNIDYPEY-DADQVTAKQMADTSKNVIQKIDRLLKTAQEGTILRNGLATAIVGRPNVGK 237

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N L + D AIVTD+ GTTRD L   + +    +K+ DTAGI  TDD VEK G++R+
Sbjct: 238 SSLLNYLTQSDKAIVTDVAGTTRDTLEEYISVNSVPLKLIDTAGIHHTDDKVEKIGVERS 297

Query: 293 FLEVENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
              ++ ADL+L               LLKE  +KK I     +D     T   ++ +   
Sbjct: 298 QKALKQADLVLLLLDGSQELTDEDKTLLKETENKKRIIILNKMDLGQKLTAKGMHDSTGS 357

Query: 338 EY--DHLISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MA 393
           E     ++     + LE+LI K+  S ++N   ++   + +++R    L++  + L+ + 
Sbjct: 358 EVVSTSILKETNLDELEDLIKKMFFSGITNSNDQI---MVTNQRQAGLLAKAKKQLQDVV 414

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              E    +DI   +   A  +LG+ITG    ++L++ +FS+FC+GK
Sbjct: 415 KAVEDGVPVDIAQIDFNGAWDTLGEITGDSAPDELVNALFSQFCLGK 461


>gi|237738571|ref|ZP_04569052.1| thiophene and furan oxidation protein THDF [Fusobacterium sp.
           2_1_31]
 gi|229424054|gb|EEO39101.1| thiophene and furan oxidation protein THDF [Fusobacterium sp.
           2_1_31]
          Length = 455

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 148/461 (32%), Positives = 244/461 (52%), Gaps = 35/461 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLDG-RIL 61
           +TI A+ST      ISI+R+SG     + E  F  K KK    K  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRAKSKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +L+ + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEQVLQVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ EE
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   + +++++     +I   IS    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 183 -GIDDPVPENLVDNLKKASAEIKDLISSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--IS 344
           IL + +               IN+ K I     ID      K ++  +   + D    IS
Sbjct: 302 ILYVIDISREIDEEDFRIYDIINTDKVIGILNKIDI-----KKEIDLSKFPKIDKWIEIS 356

Query: 345 SFTGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           + +  G++ L ++I   + N+      +KL  +   HK  L   ++ +  L +    +  
Sbjct: 357 ALSKIGIDNLEDEIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMG 414

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++A +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 415 LPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|329668160|gb|AEB94108.1| putative tRNA modification GTPase TrmE [Lactobacillus johnsonii DPC
           6026]
          Length = 461

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 248/460 (53%), Gaps = 32/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGR---I 60
           +TI A+ST      ISI+RLSG     +   + K       P   ++ Y   +D +   +
Sbjct: 9   DTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGADLTQVPSH-TIHYGHIVDPKTKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ ++ V  +P++FT ED  E + HGG+ V N IL+ L      R+A+PGEF++RAF N
Sbjct: 68  VDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRAFMN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176
           G+IDL +AES+ D++ ++T+  R+++M  ++G    ++ ++  + +D + H     E ++
Sbjct: 127 GRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIRTMRQELLDTMAHE----EVNI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  D+ + +S+E+      +   I   +   + G+IIRNG    I+G  N GKSSL 
Sbjct: 183 DYPEY-DMDDLTSQEMKKKAEEVSKQIDQLLKTAQEGKIIRNGLATAIVGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L + D AIVTDI GTTRD L   + ++G  +K+ DTAGI  T++ VEK G++R+   +
Sbjct: 242 NYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTENKVEKIGVERSKKAI 301

Query: 297 ENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
             ADL+LLL + +       K  ++   N   I I  K DL +  ++E    I+      
Sbjct: 302 AEADLVLLLLDASQDLTDEDKNLLNLTANKKRIIILNKQDLGTKISQEMIREITDNPIIV 361

Query: 351 LEELINKIKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLEMASLNEKDC- 400
              L  +  + L N  ++L FS         + +++R    L++  + LE       D  
Sbjct: 362 TSILKQENMAALENAIEQLFFSGIENSQNQILVTNQRQAGLLAKAKQSLEDVVNGIDDAM 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD++  +L+ A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 422 PLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|296125427|ref|YP_003632679.1| tRNA modification GTPase TrmE [Brachyspira murdochii DSM 12563]
 gi|296017243|gb|ADG70480.1| tRNA modification GTPase TrmE [Brachyspira murdochii DSM 12563]
          Length = 464

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 143/463 (30%), Positives = 249/463 (53%), Gaps = 32/463 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGL---- 56
           K+TI A+ST    SA+++IR+SG    ++   IC     + K   +    + ++ L    
Sbjct: 7   KDTIAALSTPYSKSALALIRMSGSKALEIASKICFYAGDENKNITKFEHRKSYYALVKDE 66

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +   +D+ +++   +P +FT ED+ EF  HG I V++ +L  L +    R AN GEF+ R
Sbjct: 67  NNTPIDELIVLSTLAPNTFTSEDTIEFISHGSIVVIDSLLNLLIR-NGARAANRGEFTYR 125

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           A+ NG+I + EAE++ DLI S   +    S+  M G L+    +  D + +    +  +L
Sbjct: 126 AYINGRIGISEAEAIHDLIDSNNRLMAEASIYKMRGRLTREIDKLRDNIKNSLILVYGEL 185

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF E+ D + FS  +++ + + +K DI + +      E + NG KI ILG  NAGKSS+F
Sbjct: 186 DFPED-DTETFSYDKLIENFINIKKDIENILYNSNRVENLINGIKIAILGRVNAGKSSIF 244

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLE 295
           N +  K+ AIV++I GTTRD L+ ++ ++     + DTAG  +E D+ +E EGI+R    
Sbjct: 245 NMILDKNRAIVSNIAGTTRDFLSENIYIDNIPFYLMDTAGFHKEADNDIELEGIERAKKC 304

Query: 296 VENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH----L 342
              A++IL +          +IN  + ++  K+ + I+I  KSD    +    D      
Sbjct: 305 AYEANIILAVFDSSRNADENDINLIEFLTTLKDKNIIYILNKSDEEKKFDYNIDSNNIIT 364

Query: 343 ISSFTGEGLEELINKIKSILSNK----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           IS+ T EG ++LI ++K+ +++     F K  +    + R   +L + ++ L++     K
Sbjct: 365 ISTKTKEGKDKLIKELKNYVNDSDIDIFNKESY---VNNRERGYLEKGLKQLDICIEKSK 421

Query: 399 -DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               LD +AE + + +  LG ++G +D E++++ IF+ FCIGK
Sbjct: 422 MSFSLDEVAEEMNILNNILGNVSGKIDAEEVINEIFANFCIGK 464


>gi|304437938|ref|ZP_07397884.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369078|gb|EFM22757.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 491

 Score =  192 bits (489), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 141/459 (30%), Positives = 234/459 (50%), Gaps = 25/459 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP------FPRKASLRYFFGLDG 58
           ++TI  ++T      I IIR+SG     V   + +           P  A   +    DG
Sbjct: 35  EDTISQIATPHGAGGIGIIRVSGEDALGVARRVFRPAAGGTLGDIAPYTARYGHIVAADG 94

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ +L+   +P S+TGED+AE   HGG  V+  +L    +    R A  GEF++RAF
Sbjct: 95  TVIDECILLYMRAPHSYTGEDTAELQCHGGAVVLREVLLRTWEA-GARPAEAGEFTKRAF 153

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            +G++DL  AES+ +LI++++      + E ++G  S        ++    + IEA +DF
Sbjct: 154 LHGRLDLARAESVMELIAAKSTRAAHAARERLAGAFSHAVTDIRTQILSAVAHIEAGIDF 213

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E+ D+   S++ +  +I      +   ++    G ++R+G K VI+G  N GKSSL NA
Sbjct: 214 PED-DIPAASAERLAAEIDAASAAVRRLLAGADTGRVLRDGVKTVIVGRPNVGKSSLLNA 272

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L   + AIVTD+PGTTRDV+  ++ + G  +++ DTAG+R  +D VE+ G+ RT   + +
Sbjct: 273 LLGMERAIVTDVPGTTRDVIEEEISVAGIPLRLLDTAGLRAAEDAVEQIGVARTEQHLMD 332

Query: 299 ADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHL------I 343
           A+LIL        L  E ++          D I + +K D  S  + E++  +      I
Sbjct: 333 AELILAVFDASEPLTAEDHALLARLSAAAADTIILCSKEDRPSVLSAEDFAAVAAPVLRI 392

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLP-FSIPSHKRHLYHLSQT-VRYLEMASLNEKDCG 401
           S+  G GL+ L  +I + +  +   L   ++P+ +R +  L +        A     D G
Sbjct: 393 SAQEGTGLDALREEIAAHIVRQEGDLSDGALPNKEREIEALRRAETHLAAAAETLAADLG 452

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D ++ +LR A  +LG+I G      L+D IFS+FCIGK
Sbjct: 453 TDFVSIDLRAAYDALGEILGETVDTDLIDRIFSEFCIGK 491


>gi|261749388|ref|YP_003257073.1| tRNA modification GTPase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497480|gb|ACX83930.1| tRNA modification GTPase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 463

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 152/467 (32%), Positives = 246/467 (52%), Gaps = 36/467 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL---D 57
           +++TI A++T    SAIS+IR+SG +     E I       K    +++     G    +
Sbjct: 3   DEDTIVALATPMGSSAISVIRISGNNSISTVETIFVSVISGKKLENQSTHTLHLGSIVDE 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             +LD+ L+ +F SP S+TGE+  E   HG   +   IL+ L K   LRLA PGEF+ RA
Sbjct: 63  NVLLDQVLVSIFRSPSSYTGENMIEISCHGSYYIQQKILQLLIK-KGLRLARPGEFTFRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K+DL +AE++ADLI SE +    +S++ + G L+        KL    S +E +LD
Sbjct: 122 FLNKKVDLSQAEAIADLILSENQADHEISLQQIKGSLTHTIKNLRKKLLDFASLLELELD 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSEE DV      E+ + +  L+  +   I    LG  I+ G  + I+G  N GKS+LFN
Sbjct: 182 FSEE-DVIFAKRSELFSFLKDLEKTLKDLIESFSLGNAIKKGIYVAIIGEPNVGKSTLFN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            + K++ +I++ I GTTRD +  +  L G      DTAGIRET D +E  G+++T  +++
Sbjct: 241 YVIKENRSIISHIEGTTRDSIEGEFVLNGIHFHFVDTAGIRETKDPIEIMGVQKTMEKIQ 300

Query: 298 NADLILLLKEINSK---------KEIS-----FPKNIDFIFIGTKSDLYSTYTEEYD--- 340
            + ++L L E ++K          EI      +P     + I  KSD+ S++ + Y    
Sbjct: 301 ESQVLLYLFEASTKEKKKQKKILHEIQLLHKKYPLK-KILAIANKSDV-SSFKDFYKIKS 358

Query: 341 -----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR--YLEMA 393
                  IS+    G+++++  + ++   K ++    I +  RH   L +++   +L   
Sbjct: 359 KIPYFFEISAKNHHGIKKMLYTLSNLFIKKLQEKNI-IVTQNRHYEALKKSLEEVFLAHE 417

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + N K    D+I+ +++ A   LG+ITG +  E++L  IFSKFCIGK
Sbjct: 418 AFN-KRVSEDLISIHIKEALRYLGEITGEITNEEILKNIFSKFCIGK 463


>gi|260655716|ref|ZP_05861189.1| tRNA modification GTPase TrmE [Jonquetella anthropi E3_33 E1]
 gi|260629633|gb|EEX47827.1| tRNA modification GTPase TrmE [Jonquetella anthropi E3_33 E1]
          Length = 454

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 238/460 (51%), Gaps = 34/460 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC--EFICKKKKPFPRKASLRYFFGLDGRILDK 63
           +TI A++T      ++I+RLSGP  +++     I    +  PR A         G+ +D 
Sbjct: 4   DTIAAIATPWGDGGVAIVRLSGPDSWRIAHARVILPCGEMTPRYAHNGQLTDEWGQTIDH 63

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L++ F +P S+TGED  E H HGG  +    LE L      R A PGEF+RRAFENG++
Sbjct: 64  VLVLPFKAPRSYTGEDVVEIHCHGGSLLAQRCLE-LVISAGARQALPGEFTRRAFENGRL 122

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE- 182
           DL +AE++A LI + +    R +   +SGEL+       D L  + + +E  LDF +E+ 
Sbjct: 123 DLSQAEAVAALIHARSNEALRAANRTLSGELTEQVKDLRDGLISLAAEVEVGLDFPDEDV 182

Query: 183 ---DVQNFSSK-EVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
              D    + + EVL  +L  LK+  +S       G I+R G ++ ++G  NAGKSSL N
Sbjct: 183 PLVDDGTLAERMEVLRSLLADLKDRCAS-------GVILREGVRVALVGRPNAGKSSLLN 235

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEV 296
           AL K+  +IVT +PGTTRD++   L   G  +++ DTAG+ E + D VE  G++R    +
Sbjct: 236 ALLKESRSIVTSVPGTTRDIVEAVLTYRGVPLRLVDTAGMGEPSHDEVELLGVERAKKAM 295

Query: 297 ENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTY-----TEEYDH---- 341
           ++AD+ + + + +        K I+       + + +KSDL   +      E++      
Sbjct: 296 KSADVRVWIIDGSRPADDLDMKLIADAAAGSHVLVISKSDLERKFDEKELAEQFPDSPLV 355

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           ++S+  G GL+EL   I S L+   K +  S+ +  R +  L      LE   L  E   
Sbjct: 356 VLSAKKGAGLDELKEAIVS-LAYGNKSVDDSLNASVRQVGELKAASESLEDGRLALESGL 414

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G   +A  L  A  +L ++ G  + + LLD IFS+FC+GK
Sbjct: 415 GQGAVASCLADAKRALDRLLGLENDQSLLDEIFSRFCVGK 454


>gi|257067216|ref|YP_003153472.1| tRNA modification GTPase TrmE [Anaerococcus prevotii DSM 20548]
 gi|256799096|gb|ACV29751.1| tRNA modification GTPase TrmE [Anaerococcus prevotii DSM 20548]
          Length = 452

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 140/458 (30%), Positives = 245/458 (53%), Gaps = 28/458 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL---- 56
           E+ TI A+ST +    ISI+R+SG   F +   +      K+    K + +  +G+    
Sbjct: 2   EERTIAAISTPSGTGGISIVRMSGSKSFDIISRVFSPINGKELDKDKDNRKMRYGVIKDR 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G  +D+ ++     P ++T ED  E + HG    V  IL  L       +A  GEF++R
Sbjct: 62  KGETIDEVMVCFMKGPFTYTREDICEINCHGSFVSVKKILNLLLD-EGCDMAEGGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFI 172
           AF NG+IDL +AE++ D+I+S  ++ ++ S+  + G    ++SS+    +D L+ +    
Sbjct: 121 AFLNGRIDLSQAEAVLDIINSTNDLSQKESIHQLQGSVKEKISSIRQDLLDALSRL---- 176

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E  ++F+E  D ++ S  E+++ +   K  I   ++    G+I+R+G    I+G  N GK
Sbjct: 177 EYSINFTE--DGEDLSPDEIISYMEKAKATIDKLLNTSNKGKILRDGINTTIIGKPNVGK 234

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N + K++ AIVTD+PGTTRD++T  +    + +KI+DTAGIRETDD+VEK G+ ++
Sbjct: 235 SSLLNKMLKENRAIVTDVPGTTRDLITEYISFGDFTLKINDTAGIRETDDLVEKIGVDKS 294

Query: 293 FLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---I 343
              ++ +DLI+ + + +       +K I   K  + I I  K+DL   +  ++D +    
Sbjct: 295 IELIDESDLIIAIFDTSRPFDKEDEKIIDLIKGRNAIIILNKADLEDKFFHDFDQVTIKT 354

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           S    EG+++L   I  + + K  K    + ++ RH   L +    L  + ++ ++   L
Sbjct: 355 SMAQDEGIDKLEEAITEMFNTKDIKRESVLITNTRHERLLKEASNKLSESLVDIKRGIPL 414

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D    +LR A   LG I G    ++++D +F +FC+GK
Sbjct: 415 DACEVDLRGAYDDLGFIIGEAVSDEIMDKVFKEFCVGK 452


>gi|284931758|gb|ADC31696.1| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str. F]
          Length = 453

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 246/452 (54%), Gaps = 25/452 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGRILDK 63
           ETI+A++T    SAI +IRLSGP  F++   IC K+  K   R  + R     + +++D 
Sbjct: 10  ETIYALATAPYNSAIHVIRLSGPDAFEIINKICDKQINKEGYRIQNARIVD--NDQVIDD 67

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            LL+ F +P+SFTGEDS E + HGG+ V+N I+  L K     LA  GEFS+R++ N KI
Sbjct: 68  VLLMKFVAPKSFTGEDSIEINCHGGLFVINKIMALLNKHG-AHLAQRGEFSKRSYINKKI 126

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +A ++ DLI ++  +    S++ +SGE S        ++  +   +E  +D+ E ED
Sbjct: 127 DLNQATAIHDLIFAKNNLSHSASIKALSGEFSKDIKNIQQEIFKLIGLVEIAIDYPEYED 186

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
            +   ++E  N +  ++  +   +++    + I  G KI I+G  NAGKSSL N+L  + 
Sbjct: 187 EKKELTEEFKN-LTNIRQKLQRIVNKSLKLKQISEGIKIAIVGEPNAGKSSLLNSLLNEQ 245

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            AIVT+IPGTTRD +   + L   L + + DTAGIR++ D +E+ GI ++F  ++ +DL+
Sbjct: 246 KAIVTNIPGTTRDTVEGQIVLNDQLIINLIDTAGIRKSSDQIEQIGINKSFKTIDKSDLV 305

Query: 303 LLLKEINSKKEIS--------FPKNIDFIFIGTKSDLY--STYTEEYDHLISSFTGEGLE 352
           + L ++N  +             K   F+ +G K D    +  T E    IS+   + + 
Sbjct: 306 IYLIDLNKYQNYDKTNIYKYLINKKKQFVLVGNKVDEVDPTLNTGEIQIKISAKNND-IS 364

Query: 353 ELINKIK----SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           +LI  ++    +I +++ K+   SI   +  + +L QT  Y     LN+ +   D++ ++
Sbjct: 365 DLIKYLEETSLAIFNDENKQ--DSIFQEEWQI-NLLQTALYNINLILNDLNQYHDLVIQH 421

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L  A+ SL K+    +   L+D IF  FC+GK
Sbjct: 422 LNEANNSLLKVLSEYEDYNLIDEIFKNFCLGK 453


>gi|167766870|ref|ZP_02438923.1| hypothetical protein CLOSS21_01387 [Clostridium sp. SS2/1]
 gi|317499289|ref|ZP_07957562.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711418|gb|EDS21997.1| hypothetical protein CLOSS21_01387 [Clostridium sp. SS2/1]
 gi|291558409|emb|CBL37209.1| tRNA modification GTPase trmE [butyrate-producing bacterium SSC/2]
 gi|316893458|gb|EFV15667.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 458

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 151/458 (32%), Positives = 235/458 (51%), Gaps = 28/458 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI------ 60
           TI A++T    S I IIR+SG     + E + K KK   +   ++ +    G +      
Sbjct: 5   TIAAIATPMTNSGIGIIRISGDEALDIIEKVFKPKKKDKKIKDVKTYTAHYGHVYDESTL 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ +++V   P S+T ED  E + HGG+ V+  +LE + K      A PGEF++RAF N
Sbjct: 65  LDECIVLVMKGPHSYTAEDVVEINCHGGVVVMKKVLEAVFK-AGATPAEPGEFTKRAFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL EAE++ DLI S+ E     S++ + G L     +   ++ H  +FIE+ LD  E
Sbjct: 124 GRIDLSEAEAVMDLIQSKNEFAMSTSLKQLEGALGKKITEIRKQIIHSVAFIESALDDPE 183

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              V  FS  E+ + +  + N ++  +     G I++ G + VI+G  NAGKSS+ N L 
Sbjct: 184 HYSVDGFSD-ELKDQVEVIINQLNEFLENADNGRILKEGIQTVIVGKPNAGKSSVLNVLL 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRD L   + ++G  + I DTAGIR+T+D++EK G+ +    +  AD
Sbjct: 243 GEERAIVTDIAGTTRDTLEESIQIKGIPLNIIDTAGIRDTNDLIEKIGVDKAKDLLTKAD 302

Query: 301 LIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISS 345
           L+L               +++ I  K+ I      D   +   SDL     E+    IS+
Sbjct: 303 LVLYVVDTSDPLTKDDEEIMELIEDKQTIVLLNKADLDQVVKVSDLKEKGFEQIVQ-ISA 361

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQTVRYLEMASLNEKDCGL-- 402
               G+EEL   I+ I           I  ++ RH   +S+ ++ L M  L   + G+  
Sbjct: 362 KEQTGIEELYQLIQDIFFEGHVSFNDEIYLTNMRHKTEVSEALKSLAMV-LQSIEDGMPE 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  + +L  A   LG ITG    E L++ IF++FC+GK
Sbjct: 421 DFFSIDLLDAYEHLGFITGESVGEDLVNEIFAEFCMGK 458


>gi|309807783|ref|ZP_07701715.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 01V1-a]
 gi|308168885|gb|EFO70971.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 01V1-a]
          Length = 386

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/319 (36%), Positives = 194/319 (60%), Gaps = 18/319 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176
           G+IDL +AES+ D+I ++T+  R+++M  + G    E+  L  + ++ + H     E ++
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMNQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL 
Sbjct: 183 DYPEY-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L+K++ AIVT+I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301

Query: 297 ENADLILLLKEINSKKEIS 315
             +DL+LLL  INS +E++
Sbjct: 302 TESDLVLLL--INSSEELT 318


>gi|83319722|ref|YP_424766.1| tRNA modification GTPase TrmE [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|123535480|sp|Q2SR47|MNME_MYCCT RecName: Full=tRNA modification GTPase mnmE
 gi|83283608|gb|ABC01540.1| tRNA modification GTPase TrmE [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 452

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/449 (30%), Positives = 243/449 (54%), Gaps = 15/449 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +T+ A +T     AI++IR+SG   F +   + K KK   ++         +  ++D+ +
Sbjct: 5   DTVVAPATNISTQAIALIRVSGSEAFLIVNKLIKDKKLEEKRGLFLRKLYFEDELIDEVV 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L  F +P SFTGE+  E   HGGI   N I+  L +    R+A  GEFS+R+F NGKIDL
Sbjct: 65  LSCFVAPNSFTGENVVEIACHGGILNTNKIINILIQ-SGARMALRGEFSQRSFLNGKIDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE + +LI ++ ++  ++ +  MSG  +    +  D L  I S I+  +D+ + +DV+
Sbjct: 124 IQAEGINNLIHAKNDLALKIGVANMSGSNNKAIIELKDNLLDIISRIQVSIDYPDYDDVE 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S +++ N +  + + I+  + + K+      G K  I+G +N GKSS+ NAL  +D A
Sbjct: 184 GSSIEDLTNLLEIINDQINKLLMRSKMAFKNSEGIKTAIVGQTNVGKSSILNALINEDKA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL- 304
           IVTDIPGTTRD++   ++LE   + + DTAGIR+T D+VE  GI ++   +  ADL+L  
Sbjct: 244 IVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLFV 303

Query: 305 -----LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLI-SSFTGEGLEE 353
                + ++++++     K+  +I I  K++  S   ++     Y++++ +S     +++
Sbjct: 304 VNKENINDLDNQEIFELLKDKTYILIVNKAEKLSQTEKQNLEKKYENIVFTSAINHDIDQ 363

Query: 354 LINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRL 411
           L+ +I  + L+ +  K    I      +  + Q    L  A S+ +    +DI+  +L  
Sbjct: 364 LVLRINQMYLNEEISKSDELILIGLNQITLVEQIKNKLSTALSVIKSGMPIDIVNVDLYD 423

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   L ++ G    ++++D IF K+C+GK
Sbjct: 424 AWNLLNELIGVEYEDEIIDNIFRKYCLGK 452


>gi|57167879|ref|ZP_00367019.1| tRNA modification GTPase TrmE [Campylobacter coli RM2228]
 gi|305432095|ref|ZP_07401262.1| tRNA modification GTPase TrmE [Campylobacter coli JV20]
 gi|57021001|gb|EAL57665.1| tRNA modification GTPase TrmE [Campylobacter coli RM2228]
 gi|304445179|gb|EFM37825.1| tRNA modification GTPase TrmE [Campylobacter coli JV20]
          Length = 442

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 152/473 (32%), Positives = 231/473 (48%), Gaps = 71/473 (15%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISIIRLSG    ++   + KK +  PR A+    F      LD+ +
Sbjct: 3   DTIVAIATAHGVGSISIIRLSGERALEIALKLSKKNELCPRYATFTKLFNQKNEFLDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF VHGG +V   +LEEL  +   RLA PGEFS+RA   GK+  
Sbjct: 63  VIYFKAPFSFTGEDIVEFQVHGGFSVSEILLEELISL-GARLAEPGEFSKRACLRGKMSP 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181
           L+A ++ DLI +++    ++    M G L  L  +    L    +F+E  +D++++    
Sbjct: 122 LKALNIQDLILAKSANAAKIIARNMQGSLGELLDKIRTDLVKTLAFVETSIDYADDDLPS 181

Query: 182 ---EDVQNFS--SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
              E +      + ++L +I  L        S+ K G I   G+KI I+G  N GKSSL 
Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SESKKGLI--EGFKIAIVGKPNVGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL     AIV+DI GTTRD +     L  +L++I DTAGIRE+ D +E+ GI+ +   +
Sbjct: 232 NALLSYKRAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDEIEQIGIELSKKSI 291

Query: 297 ENADLIL-----------------------------LLKEINSKKEISFPKNIDFIFIGT 327
           E+AD+IL                             LL + + K +   P +IDFI +  
Sbjct: 292 EDADIILAIFDNSRKKDEEDENIFKLLSQSDKKIFYLLNKSDLKTQFDKPCDIDFIELSV 351

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
           ++D+     E+ +  ++S   +G   L++ I  I + K                     +
Sbjct: 352 QNDI-QILKEKLEKYLNSLDSDGF--LVSSIALINACKISS---------------EAIL 393

Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R  E+ S N     L++ A  L LA   L K T   D  ++LD +F  FC+GK
Sbjct: 394 RAKELLSEN----SLELFAFELNLAIGELAKFTKDFDRNEILDEMFGNFCLGK 442


>gi|258406257|ref|YP_003198999.1| tRNA modification GTPase TrmE [Desulfohalobium retbaense DSM 5692]
 gi|257798484|gb|ACV69421.1| tRNA modification GTPase TrmE [Desulfohalobium retbaense DSM 5692]
          Length = 461

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/464 (29%), Positives = 242/464 (52%), Gaps = 31/464 (6%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKK-----KPFPRKASLRYFF 54
               ETI A++T      + I+RLSGP    V +  F+  ++     KP+  +    +  
Sbjct: 4   GQSTETIGAIATPLGSGGVGIVRLSGPKSLTVAQRLFLSARQTFEAFKPY--RLHHGWVT 61

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            + G  LD+ L+   P P S++GED  E + HGG AVV  +LE + +   +RLA PGEF+
Sbjct: 62  DVHGARLDEVLVSFMPGPGSYSGEDIVEINCHGGPAVVQAVLEAVLEC-GVRLARPGEFT 120

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RA+ NG++DL +AE++A++I++ T    RL+   ++G L         +L  +R  +  
Sbjct: 121 LRAYLNGRLDLTQAEAVAEMINAPTASSLRLAGSKLAGGLGRYIRDLRQRLESLRVQMCV 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF EEE ++  + +E+   +  +  DI + ++  +     R+G  +V+ G  NAGKSS
Sbjct: 181 AVDFPEEE-IECLAPEELQAGLEQVLVDIEAIMANFERDRYWRDGALVVLAGRVNAGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NA+  ++ AIVT I GTTRD L   ++L G  V++ DTAG+RETDD+VE+ G+ R+  
Sbjct: 240 LMNAILGRERAIVTPIAGTTRDYLEEQVNLSGLPVRLVDTAGLRETDDLVERAGLSRSRE 299

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS---- 344
            +E ADL+ ++ +       + +  +    N   + +  K DL   +TE  + + +    
Sbjct: 300 LLEQADLVCVVLDSSQALTADDRALLQEAPNETTLVVLNKQDL-PPHTETQEAVAAQGLP 358

Query: 345 -----SFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                +   +G++ LI  ++  ++  + +     +  + R    L+Q    L  A  +E 
Sbjct: 359 TVPAVAVEADGVDALIRAVRQRLVGERQEPEQGELVPNLRQSQGLAQAREELR-ALYDEC 417

Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             G+  D+++  L  A   L +I G +    +L+ +F +FCIGK
Sbjct: 418 RNGVPYDLLSVRLETACTILSEIIGEMTPAAVLEQVFGEFCIGK 461


>gi|260911951|ref|ZP_05918515.1| thiophene and furan oxidation protein ThdF [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260633898|gb|EEX52024.1| thiophene and furan oxidation protein ThdF [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 460

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 151/463 (32%), Positives = 249/463 (53%), Gaps = 33/463 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFPRKASLRYFFGLD 57
           ++++TI A++T A   A+ +IR+SG     + +   K  K       P +  ++Y   +D
Sbjct: 6   NDRQTICALATSA-GGALGVIRVSGSDAIDIVDRAFKAPKGKSLHTLPAQM-VQYGHIVD 63

Query: 58  GRI--LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            R   +D+ L+  F +P S+TGE+S E   HG   ++N +L+ L ++   R A PGEF++
Sbjct: 64  ERAHPIDEVLVTCFHAPHSYTGENSVEISCHGSAYILNEVLKLLVRL-GCRQAQPGEFTQ 122

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NGK+DL +AE++ADLI++      +L++  + G  S       DKL HI S IE +
Sbjct: 123 RAFLNGKMDLSQAEAVADLIAATNRASAQLALGQLRGHFSGELATLRDKLLHITSLIELE 182

Query: 176 LDFSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           LDFS++ DV  F+ ++ L  +   ++  I+S  +  + G  I+ G  + I+G +N GKS+
Sbjct: 183 LDFSDQ-DV-TFADRQELQALAEEIRTKIASLATSFETGRAIKAGISVAIVGKTNVGKST 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L K++ AIV+DI GTTRDV+   + + G   +  DTAGIR+T D +E  GI+RT+ 
Sbjct: 241 LLNRLLKEERAIVSDIHGTTRDVIEDTIQINGINFRFIDTAGIRKTSDEIESLGIERTYQ 300

Query: 295 EVENADLIL-LLKEINSKKEI----SFPKNIDFIFIGTKSDLYS------TYTEE--YDH 341
           ++  A ++L ++ +  S  EI    +  +    I +  K+D  S      ++TE+  +  
Sbjct: 301 KLTEAAVVLWVIDKAPSLSEIEEMDAHTRGKRLIVVSNKNDEQSFVFPTFSWTEQPTFVS 360

Query: 342 LISSFTG--EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH-LSQTVRYLEMASLNEK 398
           + + F    E LE  I    +I       +  +   H   L H L+   R L+  +L   
Sbjct: 361 VSAKFNTNIETLETSIYNAANIPEIHENDVVVTNVRHYEALTHALASIQRVLDGIAL--- 417

Query: 399 DCGLDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           D   D+++E+LR     L +IT G +   ++L  IF  FCIGK
Sbjct: 418 DLSGDLLSEDLRQCLHFLAEITGGGITSNEVLGNIFKHFCIGK 460


>gi|294101372|ref|YP_003553230.1| tRNA modification GTPase TrmE [Aminobacterium colombiense DSM
           12261]
 gi|293616352|gb|ADE56506.1| tRNA modification GTPase TrmE [Aminobacterium colombiense DSM
           12261]
          Length = 455

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/457 (30%), Positives = 231/457 (50%), Gaps = 25/457 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDGRI 60
           ++ I A+ST    + I+I+RLSG +  ++ + +    +P     PR     Y        
Sbjct: 3   EDIIAAISTAWGEAGIAIVRLSGFNSRELADEVVHGIRPLSETPPRVLRNGYLLDEKKEP 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L   F +P+S+TGE+  E   HGG  V    LE L      RLA PGEF+RRAF N
Sbjct: 63  IDQVLFSWFRAPKSYTGEEMVEISTHGGTLVAQKCLESLIG-KGARLAEPGEFTRRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL +AE++  +I S++E   R +   + GELSS      +++  I S IE  LDF E
Sbjct: 122 GKIDLSQAEAVLGIIRSKSEEALRAATRTLRGELSSFAKDIYNEMLTISSSIEVGLDFPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E D+    ++ V + +  LK  +   + +   G ++R G ++ ++G  N GKSSL NAL 
Sbjct: 182 E-DIPFIENEGVESALYTLKQGLEDLLDRCNTGFLLREGIRVALVGRPNVGKSSLLNALL 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K+  AIVT IPGTTRD++   L   G  +++ DTAGI    D +E  GI R    +  AD
Sbjct: 241 KESRAIVTAIPGTTRDLIEEVLTYRGIPIRLVDTAGIGAPGDEIEAMGIARAEKAMMEAD 300

Query: 301 L---------------ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISS 345
           +               + L+++I++   I      D   + ++  +     +    +IS+
Sbjct: 301 VRIWVIDGSEPLTPADLALVQKISATNHIVTINKADLPLVISEEMINGLLPQSPVFVISA 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLD 403
              EG+E L + I + ++     L   + +  R +  + + ++ L   +++LNE   G D
Sbjct: 361 EKREGIEALKDAIVTNIAGG-GTLTSGLNASSRQVEEIRKAIQALGQGISALNE-GMGQD 418

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++A  L      + ++ G    + LL+ IFS+FC+GK
Sbjct: 419 VVAACLYDGRTCMERLLGLSVDDALLETIFSQFCVGK 455


>gi|304383244|ref|ZP_07365715.1| tRNA modification GTPase TrmE [Prevotella marshii DSM 16973]
 gi|304335626|gb|EFM01885.1| tRNA modification GTPase TrmE [Prevotella marshii DSM 16973]
          Length = 460

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 147/464 (31%), Positives = 240/464 (51%), Gaps = 35/464 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---- 56
           ++  TI A++T A   A+ +IR+SG +   + +  F+   K+      +    +G     
Sbjct: 6   NDHHTICAMAT-ASGGAMGVIRVSGDNAIAIVDKTFVPASKQSLQDAKAQSVLYGYIQAE 64

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           D  ++D+ L+ VF +P S+TGED+ E   HG   ++  +LE L ++   R A PGEF++R
Sbjct: 65  DRTVIDEVLVSVFRAPHSYTGEDTVEISCHGSAYIIKEVLERLIRL-GCRQALPGEFTQR 123

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGK+DL +AE++ADLISS  +   +L++  + G  S       DKL  I S IE +L
Sbjct: 124 AFLNGKMDLSQAEAVADLISSTNKATHQLALGQLRGHFSDELRALRDKLLKITSLIELEL 183

Query: 177 DFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           DFS++ DV  F+++E L  +   +K  I+      + G  +++G  + I+G +N GKS+L
Sbjct: 184 DFSDQ-DV-TFANREELQQLAQHIKEKITRLAQSFQTGRALKSGVSVAIVGKTNVGKSTL 241

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L K++ AIV++I GTTRDV+   + + G   +  DTAGIRET+D +E  GI+RT+ +
Sbjct: 242 LNRLLKEERAIVSEIHGTTRDVIEDTMQIRGVTFRFIDTAGIRETNDKIESLGIERTYRK 301

Query: 296 VENADLILLLKEINSK-KEI----SFPKNIDFIFIGTKSDLYSTYTEEYDHLIS-SFTG- 348
           +  A +++ + + +    EI    +  K    I +  K D       +Y   I  +F   
Sbjct: 302 LSEAAIVIWMIDASPTFSEIQEMEARVKGKKLIVVANKMDEKEVVLADYPWTIQPAFLAV 361

Query: 349 --------EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKD 399
                   + LE  I     I       +  +   H   L H  +++ R +E        
Sbjct: 362 SAKYNRNIDLLEATIYHAADIPEIHENDVIVTNARHYEALLHAQESIGRVIEGIV----- 416

Query: 400 CGL--DIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
            GL  D+++E+LR     L +IT G +    +L+ IF  FCIGK
Sbjct: 417 TGLSGDLLSEDLRQCIHQLSEITGGTITTSDVLNSIFKDFCIGK 460


>gi|282856945|ref|ZP_06266200.1| tRNA modification GTPase TrmE [Pyramidobacter piscolens W5455]
 gi|282585236|gb|EFB90549.1| tRNA modification GTPase TrmE [Pyramidobacter piscolens W5455]
          Length = 455

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 233/459 (50%), Gaps = 31/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL-RYFFGLD--GRILD 62
           +TI A+ST    S I+I+RLSGP  + + +   + +   P K    R    LD  G ++D
Sbjct: 4   DTIAAISTAWGNSGIAIVRLSGPDSWAIAQRQVRLQTEAPLKVRFARNAVLLDESGEVID 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
             L++ F  P S+TGED  E H HGG       LE L      R+A PGE++RRAFENG+
Sbjct: 64  HILVLPFRGPRSYTGEDLVELHCHGGSLAAQRCLELLIS-GGARMALPGEYTRRAFENGR 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++  LI + +    R +   + GEL+    +  ++LT + + IE  LDF EE 
Sbjct: 123 LDLSQAEAVGALIQARSNEALRAANRTLDGELTRAVSEIYEELTSLGAEIEVGLDFPEE- 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV   + + +   +  ++  ++  + +   G I+R G ++ I+G  NAGKSSL NAL K+
Sbjct: 182 DVPYIADESLAGRLEIVRQSLADLLERCSSGVILREGIRVAIVGRPNAGKSSLLNALLKE 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENADL 301
             AIVT IPGTTRDV+   L   G  +++ DTAGI E   D VE  G++R    ++ AD+
Sbjct: 242 SRAIVTAIPGTTRDVIEAVLTYRGIPLRLVDTAGITENYHDEVEAIGVERARAAMKEADV 301

Query: 302 ILLL---------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE-------YDHLISS 345
            + +         ++++   E++   +   + +  K+DL    +E           +IS 
Sbjct: 302 CVWVIDGSEPLHQEDVDRVHELA---DTPHLVVLNKADLPQQISEASLTALIPASTVISV 358

Query: 346 FTGEG--LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
              +G  L+EL   +  ++S     L   + +  R +  L   +  +    L     GLD
Sbjct: 359 SAAKGLRLDELKESLVGLVSGT-GALDTGLNASSRQVEELRGAIASVGTG-LKALGDGLD 416

Query: 404 --IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++  +  A  SL +I G    E LL  IF +FCIGK
Sbjct: 417 QALVSSCVGDARRSLSRILGGDRDEDLLHEIFGRFCIGK 455


>gi|331703092|ref|YP_004399779.1| tRNA modification GTPase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801647|emb|CBW53800.1| tRNA modification GTPase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 452

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/449 (30%), Positives = 242/449 (53%), Gaps = 15/449 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +T+ A +T     AI++IR+SG   F +   + K KK   ++            ++D+ +
Sbjct: 5   DTVVAPATNISTQAIALIRVSGSEAFLIVNKLIKDKKLEEKRGLFLRKLYFKNELIDEVV 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L  F +P SFTGE+  E   HGGI   N I+  L +    R+A  GEFS+R+F NGKIDL
Sbjct: 65  LSCFVAPNSFTGENVVEIACHGGILNTNKIINILIQ-SGARMALRGEFSQRSFLNGKIDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE + +LI ++ ++  ++ +  MSG  +    +  D L  I S I+  +D+ + +DV+
Sbjct: 124 IQAEGINNLIHAKNDLALKIGVANMSGSNNKAIIELKDNLLDIISRIQVSIDYPDYDDVE 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S +++ N +  + + I+  + + K+      G K  I+G +N GKSS+ NAL  +D A
Sbjct: 184 GSSIEDLTNLLEVINDQINKLLMRSKMAFKNSEGIKTAIVGQTNVGKSSILNALINEDKA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL- 304
           IVTDIPGTTRD++   ++LE   + + DTAGIR+T D+VE  GI ++   +  ADL+L  
Sbjct: 244 IVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLFV 303

Query: 305 -----LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLI-SSFTGEGLEE 353
                + ++++++     K+  +I I  K++  S   ++     Y++++ +S     +++
Sbjct: 304 VNKENINDLDNQEIFDLLKDKTYILIVNKAEKLSQTEKQNLEKKYENIVFTSAINHDIDQ 363

Query: 354 LINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRL 411
           L+ +I  + L+ +  K    I      +  + Q    L  A S+ +    +DI+  +L  
Sbjct: 364 LVLRINQMFLNEEISKNDELILIGLNQITLVEQIKNKLSTALSVIKSGMPIDIVNVDLYD 423

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   L ++ G    ++++D IF K+C+GK
Sbjct: 424 AWNLLNELIGVEYEDEIIDNIFRKYCLGK 452


>gi|282889533|ref|ZP_06298075.1| hypothetical protein pah_c001o004 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500546|gb|EFB42823.1| hypothetical protein pah_c001o004 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 476

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 144/458 (31%), Positives = 227/458 (49%), Gaps = 35/458 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63
           +TI A++T      ++IIR+SG +  +V      +        +++Y      +G  +D 
Sbjct: 31  DTIAAIATPPGEGGVAIIRISGNAAIEVASRCFSRPVEGLPTHTVQYGKIKNREGECVDH 90

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            LL+   +P S+TGE + E H HGG  +   +L+ + +    R A PGEF+ +AF NGK+
Sbjct: 91  VLLLPMHAPRSYTGEHTVEIHCHGGSLIARRVLQTVLEA-GARAARPGEFTFKAFMNGKL 149

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ +LI ++ E     +   + G L+     +   L  I + +EA +DF EE  
Sbjct: 150 DLAQAEAVQELIGAKNEKALHAAGSQLQGALTRKISTFQHGLNDIAAILEAWVDFPEEG- 208

Query: 184 VQNFSSKE----VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
              F++ E     L + +     +++    GK   I+R+G  + ++G  N GKSSL NAL
Sbjct: 209 -LEFATMEEIQVTLREAIEAMQKLAATFHNGK---ILRDGVSLCLIGCPNVGKSSLMNAL 264

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             KD AIV+ I GTTRD+L   L L G   ++ DTAGIR++D+IVE EGI+R+   ++ A
Sbjct: 265 LGKDRAIVSAIAGTTRDILEDHLKLNGLNFRLLDTAGIRDSDEIVEAEGIRRSRQAIQEA 324

Query: 300 DLI---------------LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
           DLI               LL+++I  +K I     ID          +ST        +S
Sbjct: 325 DLILFVLDSSRGLQADDHLLMQQIPHEKTIGVWNKIDIQKPEMTPLPFSTVC------VS 378

Query: 345 SFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402
           +   +GL+ L   I + I  N        + +  RHL  L+Q + + +       D    
Sbjct: 379 AQERQGLDTLHETIDQVIWKNGMPDQQEVVITSMRHLQALTQAILFAQNVHDGLTDNLSP 438

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +  ++R     LGKI G    E +L  IFSKFCIGK
Sbjct: 439 EFLCVDMRQCLRELGKIIGTNVTEDILSSIFSKFCIGK 476


>gi|11465467|ref|NP_045142.1| thiophen and furan oxidation protein [Cyanidium caldarium]
 gi|14195300|sp|Q9TLX6|MNME_CYACA RecName: Full=Probable tRNA modification GTPase mnmE
 gi|6466370|gb|AAF12952.1|AF022186_75 unknown [Cyanidium caldarium]
          Length = 465

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 155/473 (32%), Positives = 246/473 (52%), Gaps = 44/473 (9%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFF--GLDG 58
           ++++TI A++T      +SI+RLSG     V + +      + +     L  +     D 
Sbjct: 2   YKRDTIAAIATCPNGGGVSILRLSGSKSIDVVKTVSLVSSNQCWHSHCILYGWIKDNEDQ 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+++  +P S+T E+  E H H  I + N IL  L K   +RLA PGEF+ RAF
Sbjct: 62  SFVDEVLILLMMAPRSYTAENVVEIHCHASIVLANEILRILVK-QGVRLAKPGEFTMRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL-- 176
            NG+I L + ES+  +I S+T    +L+    +  L     + I +L H  S + ADL  
Sbjct: 121 LNGRIGLSQVESVLKVIHSKTIASAKLA----ANTLRRGGSERIRRLKHTLSLLLADLEF 176

Query: 177 --DFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
             DFS+E    + +++     + + +L +K+ ISS+    KL E    G K+ I+G  N 
Sbjct: 177 HIDFSDEFIDVDSIEDELRSTIQSSLLDIKDLISSYNKVSKLNE----GTKVCIIGKPNV 232

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSL NA+AK++ +IVT+ PGTTRD+++ +  L   LV++ DTAGIR++ D +EK GI 
Sbjct: 233 GKSSLLNAIAKRECSIVTNFPGTTRDIVSFETMLGNTLVRLYDTAGIRQSVDEIEKIGIS 292

Query: 291 RTFLEVENADLILL----LKEINSKKEISFPK----NIDFIFIGTKSD--LYSTYTEEYD 340
           +T L V+   ++      ++ ++S+  + F K    N +F+ +  K D  +     E Y+
Sbjct: 293 KTELFVDECQIVFFVLDAIQGLSSEDSVIFNKLNLMNKNFVILINKIDKKVQRKIDEIYE 352

Query: 341 HL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            L         +S+    GLE+L N I  + S +   LP     + ++L  L+     L+
Sbjct: 353 TLKCSNRRIIEVSAIKNIGLEKLNNCILDLSSKEDFDLPVHFSVNCKYLEILNNIYLILD 412

Query: 392 ---MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE-QLLDIIFSKFCIGK 440
                SLN+     D IA  LR     L +ITG   VE  +LD IFSKFC+GK
Sbjct: 413 ELYTGSLNKSVTSYDFIAVELRRVLQGLNQITGDEVVENNVLDAIFSKFCVGK 465


>gi|313896881|ref|ZP_07830428.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312974328|gb|EFR39796.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 461

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 150/463 (32%), Positives = 236/463 (50%), Gaps = 25/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF------PRKASLRYFF 54
           M  E++TI  ++T      I I+R+SG     V   + +  +        P  A   +  
Sbjct: 1   MRGERDTISQIATPPGAGGIGIVRVSGADALHVARAVFRPARGGRLEGIEPYTARYGHIT 60

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             DG ++D+ +L+   +P S+TGED+AE   HGG  V+  +L    +    R A  GEF+
Sbjct: 61  AADGTVIDECVLLYMRAPHSYTGEDTAELQCHGGTLVLREVLLRTWEA-GARPAEAGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL  AE + +LIS+++    R + E M+G L+        +L    + IEA
Sbjct: 120 KRAFLNGRLDLSRAEGVMELISAKSARAVRAARERMAGALAEKIAGIRTRLLGAIAHIEA 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF E+ D+    +  +  DI     D++  +     G I+R G K VI+G  N GKSS
Sbjct: 180 GIDFPED-DIPEARTGALAADIAAASADVARLLEGADAGRILREGMKTVIVGRPNVGKSS 238

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL   + AIVTD+PGTTRDV+   + +EG  +++ DTAG+R  +D VE+ G+ RT  
Sbjct: 239 LLNALLGMERAIVTDVPGTTRDVIEEQIVIEGIPLRLLDTAGLRAAEDAVEQIGVARTQR 298

Query: 295 EVENADLILLL----KEINSKKE--ISFPKNI--DFIFIGTKSDLYSTYT-EEYDHL--- 342
            + +A+L+L +      +  + E  I   +N   + I +  K D  S  T  ++  L   
Sbjct: 299 HLADAELVLAVFDGAAPLTPEDEDLIVRLRNCAAEMIVLCNKEDRDSVLTAADFSMLDAP 358

Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
              IS+  G GL++L   I  I+      L   ++P+ +R    L +   +L+ A     
Sbjct: 359 VLVISAQAGTGLDDLRRAIAEIVRRMEGDLGDGALPNVERETEALRRAAEHLQAAQETLA 418

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D G D ++ +L  A   LG+I G      L+D IFS+FCIGK
Sbjct: 419 GDMGTDFVSIDLHAAYEILGEILGETADTDLIDKIFSEFCIGK 461


>gi|269836202|ref|YP_003318430.1| tRNA modification GTPase TrmE [Sphaerobacter thermophilus DSM
           20745]
 gi|269785465|gb|ACZ37608.1| tRNA modification GTPase TrmE [Sphaerobacter thermophilus DSM
           20745]
          Length = 466

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 236/470 (50%), Gaps = 42/470 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----PRKASLRYFFGL---- 56
           +TI A++T      I I+R+SGP   Q+   I ++ +        +  S R ++G     
Sbjct: 4   DTISAIATPLGEGGIGIVRISGPDADQIASRIFRRGRSLRPVDVAQLESHRLYYGYVVDP 63

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            D R++D+ LL    +P S+T ED  E   HGG  VV  +L  L      R A PGEF+ 
Sbjct: 64  RDERVVDEVLLARMAAPRSYTREDVVEISCHGGPLVVREVLR-LTLAAGARQAEPGEFTL 122

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++  ++S+ T     L++  + G +    G   + L    ++++A 
Sbjct: 123 RAFLNGRIDLAQAEAVMAVVSARTPDSLDLAVGELRGRMVGRLGPAREALIEALAYLDAS 182

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
            DF E+E        ++   +   +  +   ++  +LG + R G +I I+G  N GKSSL
Sbjct: 183 ADFPEDE----VPPLDLTGTLARAEAALDEVVAGARLGLLYREGVQIAIVGRPNVGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L + + AIVTDI GTTRDV+   ++L+G    + DTAGI +T+DI+E+ GI R+   
Sbjct: 239 LNTLLRAERAIVTDIAGTTRDVIAESINLQGIPATLIDTAGIADTEDIIERMGIDRSRRA 298

Query: 296 VENADLILLLKEINS-------------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
           ++ A L + + + +              ++ ++   +   + +  K DL   +  ++D +
Sbjct: 299 LDTAGLAIFVLDGSMPPTPDDFRVAELLQRRVASDGHDRLVLVLNKRDLPDRH--DHDEI 356

Query: 343 -----------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                      +S+ TGEG+ +L   +   L  +  +         R    L++ +  + 
Sbjct: 357 RALLPGAPVVEVSTRTGEGIAQLEATLAEALIARAAEGAAPALVTLRQQQALTRALESIR 416

Query: 392 MASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A    + +  LD++A ++R A +++G+ITG    E +LD IF++FCIGK
Sbjct: 417 QARAALDAEIPLDLVAVDVRDALLAVGEITGEQVSETILDEIFARFCIGK 466


>gi|256383901|gb|ACU78471.1| tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256384732|gb|ACU79301.1| tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455373|gb|ADH21608.1| tRNA modification GTPase TrmE [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 452

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 139/449 (30%), Positives = 243/449 (54%), Gaps = 15/449 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +T+ A +T     AI++IR+SG   F +   + K KK   ++         +  ++D+ +
Sbjct: 5   DTVVAPATNISTQAIALIRVSGSEAFLIVNKLIKDKKLEEKRGLFLRKLYFENELIDEVV 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L  F +P SFTGE+  E   HGGI   N I+  L +    R+A  GEFS+R+F NGKIDL
Sbjct: 65  LSCFVAPNSFTGENVVEIACHGGILNTNKIINILIQ-SGARMALRGEFSQRSFLNGKIDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE + +LI ++ ++  ++ +  MSG  +    +  D L  I S I+  +D+ + +DV+
Sbjct: 124 IQAEGINNLIHAKNDLALKIGVANMSGSNNKAIIELKDNLLDIISRIQVSIDYPDYDDVE 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S +++ N +  + + I+  + + K+      G K  I+G +N GKSS+ NAL  +D A
Sbjct: 184 GSSIEDLTNLLEVINDQINKLLMRSKMAFKNSEGIKTAIIGQTNVGKSSILNALINEDKA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDIPGTTRD++   ++LE   + + DTAGIR+T D+VE  GI ++   +  ADL+L +
Sbjct: 244 IVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLFV 303

Query: 306 ---KEIN--SKKEI-SFPKNIDFIFIGTKSDLYSTYTEE-----YDHLI-SSFTGEGLEE 353
              + IN    +EI    K+  +I I  K++  S   ++     Y++++ +S     +++
Sbjct: 304 VNKENINDSDNQEIFELLKDKTYILIVNKAEKLSQTEKQNLEKKYENIVFTSAINHDIDQ 363

Query: 354 LINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRL 411
           L+ +I  + L+ +  K    I      +  + Q    L  A S+ +    +DI+  +L  
Sbjct: 364 LVLRINQMFLNEEISKNDELILIGLNQITLVEQIKNKLSTALSVIKSGMPIDIVNVDLYD 423

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   L ++ G    ++++D IF K+C+GK
Sbjct: 424 AWNLLNELIGVEYEDEIIDNIFRKYCLGK 452


>gi|237724699|ref|ZP_04555180.1| tRNA modification GTPase mnmE [Bacteroides sp. D4]
 gi|229436894|gb|EEO46971.1| tRNA modification GTPase mnmE [Bacteroides dorei 5_1_36/D4]
          Length = 498

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 157/506 (31%), Positives = 255/506 (50%), Gaps = 81/506 (16%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--------CKKKKPF---------PRK 47
           ++TI A++T A   AI IIR+SGP   ++   I          ++ P+         P++
Sbjct: 4   QDTICAIAT-AQGGAIGIIRVSGPKAIEITSRIFTPATGKLLTERAPYTLTFGKICSPKR 62

Query: 48  ASLRYFFGLDGRI---------------------LDKGLLIVFPSPESFTGEDSAEFHVH 86
                 F     I                     +D+ L+ +F +P S+TGEDS E   H
Sbjct: 63  KINNTLFQKTSEIPQEKSETLQKKESIIPSAEEVIDEVLISLFRAPHSYTGEDSTEIMCH 122

Query: 87  GGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS 146
           G   ++  +++ L      R A PGE+++RAF NGK+DL +AE++ADLI+S +    RL+
Sbjct: 123 GSSYILQQVIQ-LLIYNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSAATHRLA 181

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           M  M G  S       ++L H  S +E +LDFS+ E+++ F++++ L+ +      + + 
Sbjct: 182 MSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELE-FANRDELSSLATHIEQVIAQ 240

Query: 207 ISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           ++    +G  I+NG  + I+G +NAGKS+L NAL  ++ AIV+DI GTTRDV+   ++L+
Sbjct: 241 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 300

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEIS 315
           G   +  DTAGIR+T+D +E  GI+RTF +++ A +IL +  I+S          K EI 
Sbjct: 301 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWM--IDSTDAQRRFEELKAEI- 357

Query: 316 FP--KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK-----SILSNKFKK 368
            P  +    I +  KSDL     +E   L + F    +E+L    K     +IL  K  +
Sbjct: 358 LPHCEGKKMIILFNKSDLLLAIQKE--ELSAIFADMKVEKLFISAKKRENITILEKKLVQ 415

Query: 369 LPFSIPSHKR------HLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSL 416
              ++P   +      ++ H     R L+  S++    GL      D+++E+LR     L
Sbjct: 416 AA-ALPEINQNDIIITNVRHYEALTRALD--SIHRVQEGLQLGLSGDLVSEDLRQCIHEL 472

Query: 417 GKIT--GCVDVEQLLDIIFSKFCIGK 440
            +I   G +  E+ L  IF  FCIGK
Sbjct: 473 SEIVAEGGITSEETLQNIFQNFCIGK 498


>gi|313158073|gb|EFR57478.1| tRNA modification GTPase TrmE [Alistipes sp. HGB5]
          Length = 476

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 145/460 (31%), Positives = 230/460 (50%), Gaps = 45/460 (9%)

Query: 22  IIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LDGRILDKGLLIVFPSPESFTGE 78
           +IR+SG +   +C+ I +   P          +G    DGR LD  L+ VF +P S+TGE
Sbjct: 21  VIRVSGGNALTICDRIFRGSAPLADAGGYTVHYGHIMADGRTLDDVLVTVFRAPRSYTGE 80

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D+AE   HG   +V   L  L      R+A PGEF+ RA+  GK+DL +AE++AD+I+S 
Sbjct: 81  DAAEISCHGSQYIVTETLR-LLTAAGARMAQPGEFTIRAYLAGKLDLSQAEAVADIIASS 139

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +     L+   M G  S+ +    +KL H+ S +E +LDFSEEE    F+ +  L D + 
Sbjct: 140 SRASHALAANQMRGGYSAAFDTLREKLLHLTSLLELELDFSEEE--VEFADRTQLRDTMR 197

Query: 199 -LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +K  I +  S   LG  I+ G  + I+G  N GKS+L N L  ++ A+V+DI GTTRD+
Sbjct: 198 QIKERIDALRSSFSLGNAIKEGVAVAIVGAPNVGKSTLLNRLLNEERAMVSDIAGTTRDI 257

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL------------ 305
           +    +++G + +  DTAGIR T+D +E+ GI RT   +E A +I+ L            
Sbjct: 258 IEERANIDGIVFRFLDTAGIRSTNDTLEQMGIARTMSSIERAQIIIRLIDASQPAVPVSG 317

Query: 306 -----KEINSKKEISFP--------KNIDFIFIGTKSDLYSTYTE----------EYDHL 342
                 +   K   + P        ++ DF     ++ L + Y +          E    
Sbjct: 318 GSPSSGQTGRKSAPAVPSADSAADTQSPDFPLRPDQT-LLTVYNKIDKTPGLALPEGAVG 376

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CG 401
           IS+  G+G+++L   ++  +  +      ++ S+ RH   L+     L  A    +D   
Sbjct: 377 ISARNGDGIDDLRRILRDAVDTEALYHGGTVISNSRHYEALTSASEALSAALDGLRDNLP 436

Query: 402 LDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
            D+++E +R     L  +TG  +  E++L  IFSKFCIGK
Sbjct: 437 TDLLSEEIRQVIRHLSGVTGQDIVPEEVLKTIFSKFCIGK 476


>gi|320354718|ref|YP_004196057.1| tRNA modification GTPase trmE [Desulfobulbus propionicus DSM 2032]
 gi|320123220|gb|ADW18766.1| tRNA modification GTPase trmE [Desulfobulbus propionicus DSM 2032]
          Length = 463

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 145/468 (30%), Positives = 243/468 (51%), Gaps = 35/468 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           ++   +TI A++T      I IIR+SGP    +   +    KP     S + ++G     
Sbjct: 3   VHRANDTIAAIATAPGTGGIGIIRISGPEALTLLRQLFVSHKPHSHFTSHQLYYGTVMNR 62

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G++LD+ L +   +P ++T ED  E   HG   V+  IL  + +    R A+PGEF++R
Sbjct: 63  AGQVLDEALAVYMRAPHTYTREDVVELQCHGSYLVLQEILRTVFER-GARPADPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF  G+IDL  AE++ DL+ ++TE    L++  + G L +   Q  D L  I + +E  +
Sbjct: 122 AFLAGRIDLTRAEAVVDLLQAQTEKGALLAVNQLRGALFAELEQIRDHLLSILAVLEVAI 181

Query: 177 DFSEEEDVQNFSSKEVLNDI-LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           DF +E D + F+++++ + +   L   +   I+  + G+I+R G K+VI G  N GKSSL
Sbjct: 182 DFPDE-DAEIFAAQQIQDQLQTHLIGPLERLIAMAEQGKIVREGVKVVITGQPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ A+VT +PGTTRD +   + + G  + + DTAGIR   D VE  GI+R   +
Sbjct: 241 LNTLLQEERALVTPLPGTTRDTIEERIAIRGIPLHLVDTAGIRLHHDPVEALGIERARQK 300

Query: 296 VENADLILLL-------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           VE ADL+L L       +E + +   S   N   + +  K DL +   E+   + S F+G
Sbjct: 301 VEQADLVLFLVDAQVGWRETDEELYRSL-GNKPHVIVVNKRDLAT--KEQIASIFSRFSG 357

Query: 349 -----------EGLEELINKI-KSILSNK---FKKLPFSIPSHKRHLYHLSQTV-RYLEM 392
                      EG++EL   + ++I+ +     +++  +  +  R + H + T  R  E 
Sbjct: 358 KKVVAISAKQQEGIDELQEAVYQAIIGDGAELCERMTCAPNTRHRSILHKTLTACRGFEA 417

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A        +D++A  ++ A   LG I G    + +LD++FS+FCIGK
Sbjct: 418 AM--AMAAPVDLLAVEVQSALDHLGDIVGLTTPDDVLDVVFSQFCIGK 463


>gi|323345523|ref|ZP_08085746.1| thiophene and furan oxidation protein ThdF [Prevotella oralis ATCC
           33269]
 gi|323093637|gb|EFZ36215.1| thiophene and furan oxidation protein ThdF [Prevotella oralis ATCC
           33269]
          Length = 453

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 150/458 (32%), Positives = 237/458 (51%), Gaps = 31/458 (6%)

Query: 6   ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPF----PRKASLRYFFGLD 57
           ETI A++T   PS  AI +IR+SGP    +    F     +      P            
Sbjct: 4   ETICALAT---PSGGAIGVIRISGPQAISITANTFHSANGRSLTEANPNTIHYGEIINRK 60

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ++D  L+ +F +P S+TGEDS E   HG   ++N IL  L      R A  GE+++RA
Sbjct: 61  GDVIDDVLVSIFRAPHSYTGEDSTEISCHGSHYIINEILHTLIDA-GCRQAKAGEYTQRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           + NGK+DL +AE++ADLI++      R+++  + G  S+      D+L  I S IE +LD
Sbjct: 120 YLNGKMDLSQAEAVADLIATTNRATHRIALSQLKGNFSNELSILRDQLLKITSLIELELD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FS++ DV     +E+L  +   +  I +  +  +    ++ G  + I+G +N GKS+L N
Sbjct: 180 FSDQ-DVNFADRQELLELVQKAEQRIGTLATSFETDNALKKGVPVAIVGKTNVGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+    ++     +  DTAGIR TDD +E  GI+RT+ ++ 
Sbjct: 239 RLLHEDKAIVSDIHGTTRDVIEDTTEIHDITFRFIDTAGIRHTDDKIELLGIERTYQKIN 298

Query: 298 NADLIL-LLKEINSKKEIS-FPKNI---DFIFIGTKSDLYS-----TYTEEYDHLISSFT 347
            A +IL L+ +  + +EIS   KNI     I +  K DL +     T  +     IS+  
Sbjct: 299 EATIILWLIDKQPTNEEISEIKKNIRGKKLITVWNKIDLENPPPIPTSLQSPIIYISAKQ 358

Query: 348 GEG---LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGLD 403
           G     LE+ + +   I   K   +  +   H   L H  +++ R +E     +K+   D
Sbjct: 359 GTNIPQLEDALFQAADIPEIKENDIIITSARHYEALTHAHESISRVIEGL---QKNLSGD 415

Query: 404 IIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
           +++E+LR+    L +ITG  +   ++L+ IFS FCIGK
Sbjct: 416 LLSEDLRICIDHLAEITGGQITTNEVLENIFSHFCIGK 453


>gi|297621993|ref|YP_003710130.1| tRNA modification GTPase TrmE [Waddlia chondrophila WSU 86-1044]
 gi|297377294|gb|ADI39124.1| tRNA modification GTPase TrmE [Waddlia chondrophila WSU 86-1044]
          Length = 452

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 140/452 (30%), Positives = 237/452 (52%), Gaps = 25/452 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY-FFGLDGRILDKGL 65
           TI A++T      +++IR+SG     +   I        +  ++RY      G  +D  L
Sbjct: 8   TIAAIATPPGEGGVAVIRISGKESIPIANAIFSGSIDSMKSHTVRYGHIRCQGEHIDDVL 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+V  +P S+TGED+ E H HGG  +   +L+ +      + A PGEF+ RAF + K+DL
Sbjct: 68  LLVMRAPRSYTGEDTVEIHCHGGSLITRRVLDTVLAA-GAKQALPGEFTFRAFIHNKLDL 126

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ +LI ++ E     S + + G LS     +  +L  I + +EA +DF +E  ++
Sbjct: 127 SQAEAVQELIGAKNERALDASKQQLQGRLSDKILSFQSQLNSIAAILEAWVDFPDE-GLE 185

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S +EV +D+  +  ++    S    G+I+ +G  + ++G  N GKSSL NAL  K+ A
Sbjct: 186 FASFEEVCSDLESVIGEMKELKSTYHDGKILHDGISLCLIGRPNVGKSSLMNALLDKERA 245

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTD PGTTRD++   L + G   ++ DTAGIRE  + +E+EGI+R+   +E ADL+LL+
Sbjct: 246 IVTDTPGTTRDIVEDSLRINGLNFRLIDTAGIREGAETIEQEGIRRSKEALEKADLVLLV 305

Query: 306 KEINSKKEISFPKN--IDFIFIGTKSDLYSTYTEEYDHL----------ISSFTGEGLEE 353
             +++K+ ++      ID +  G    +++     +D            IS+   +GL++
Sbjct: 306 --LDAKRGVTAEDEQLIDLVPKGKTIAVWNKIDLPHDEAPQLGIPYIVPISAKEKKGLKQ 363

Query: 354 LINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAEN 408
           L  +I  ++   ++  P S    + ++ RH   LS  +   E        D   + +A +
Sbjct: 364 LHEQIDRVV---WEHGPPSKEEILITNVRHKESLSDAIAACEKVLEGLRSDISPEFVAFD 420

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +R    +LGK+ G    E +L  IFSKFC+GK
Sbjct: 421 MRDCLENLGKVIGTDVTEDILSAIFSKFCVGK 452


>gi|88803376|ref|ZP_01118902.1| tRNA modification GTPase [Polaribacter irgensii 23-P]
 gi|88780942|gb|EAR12121.1| tRNA modification GTPase [Polaribacter irgensii 23-P]
          Length = 464

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 150/476 (31%), Positives = 246/476 (51%), Gaps = 53/476 (11%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFG--LDG 58
           + +TI A++T +   AIS+IRLSG     + E   K   K K    + +     G  +D 
Sbjct: 3   QNDTIIALATPSGVGAISVIRLSGEQAIPIVEANFKSIQKNKYLKDQKTHTIHLGHIVDN 62

Query: 59  R-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           + +LD+ L+ +F +P+S+TGE+  E   HG   +   I++   +    R+AN GEF+ RA
Sbjct: 63  KSVLDEVLVSIFKNPKSYTGENVVEISCHGSSFIQQEIIQLFLR-KGCRMANNGEFTMRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIE 173
           F N K+DL +AE++AD+I+S +    +++++ M G    EL  L  Q +D      + IE
Sbjct: 122 FLNAKMDLSQAEAVADVIASNSAASHQMAIQQMRGGITNELKELRAQLLD----FAALIE 177

Query: 174 ADLDFSEEE----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
            +LDFS E+    D   F  KE++  I F+   +   I     G  ++NG  + I+G  N
Sbjct: 178 LELDFSGEDVEFADRTKF--KELVVQITFV---LKRLIDSFSFGNAMKNGIPVAIIGEPN 232

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKS+L N L  ++ AIV++I GTTRD +  +L + G   +  DTAGIRET DI+E  GI
Sbjct: 233 VGKSTLLNTLLNEEKAIVSEIAGTTRDAIEDELIIAGVAFRFIDTAGIRETIDIIESIGI 292

Query: 290 KRTFLEVENADLILLLKEIN---------------------SKKEISFPKNIDFIFIGTK 328
           K+ + + +NA LI+ L + N                     +K+ +     ID +    K
Sbjct: 293 KKAYEKADNAQLIVFLIDANKFNHNQPQFLTEIDTIKSRFPTKRVLVIANKIDTLLASEK 352

Query: 329 SDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           ++L +    E ++LI  S+    G+E L +++  +++        +I ++ RH   L+  
Sbjct: 353 AELQT----EIENLILLSAKNNTGVEALKSELTDLVNIGALSNNETIVTNSRHFEALNNA 408

Query: 387 VRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQ-LLDIIFSKFCIGK 440
           +R +       E +   D+ + ++R     LG ITG  DV++ +L  IFS FCIGK
Sbjct: 409 LRAISSVQQGIELEISTDLFSIDIRECLRHLGAITGDYDVDKDILGHIFSNFCIGK 464


>gi|303235717|ref|ZP_07322324.1| tRNA modification GTPase TrmE [Prevotella disiens FB035-09AN]
 gi|302484164|gb|EFL47152.1| tRNA modification GTPase TrmE [Prevotella disiens FB035-09AN]
          Length = 460

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 144/459 (31%), Positives = 245/459 (53%), Gaps = 34/459 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63
           ETI A++T     AI +IR+SG    ++ + I  K        +L Y      D + +D+
Sbjct: 12  ETICALATQP-GGAIGVIRISGSKAIEIVDSIFSKSILNATANTLHYGEIIDKDQQTIDE 70

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++ ++ +P S+TGED+ E   HG   ++  +L  L +    + A PGE+++RA+ NGK+
Sbjct: 71  VVVSLWRAPHSYTGEDAVEISCHGSAYILEQVLHRLIE-AGCQQAKPGEYTQRAYLNGKM 129

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL + E++ADLI+S  +   +L++  + G  SS      ++L  I S +E +LDFS+ E+
Sbjct: 130 DLSQTEAVADLIASTNKASYKLALSQLKGHFSSELSTLREQLLKINSLLELELDFSDHEE 189

Query: 184 VQNFSSKEVLNDILFLKNDISSHIS----QGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           ++ F+ +  L +   L N+I S ++      K G+ ++NG  + I+G +N GKS+L N L
Sbjct: 190 LE-FADRTELKE---LANEIDSKVTTLARSFKTGQALKNGIPVAIIGKTNVGKSTLLNRL 245

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            + + AIV+DI GTTRDV+   + + G      DTAGIR+T D VE+ GI+RT  E++ A
Sbjct: 246 LRDNRAIVSDIHGTTRDVIEDSISINGVDFLFIDTAGIRKTTDYVEQLGIERTLAELQKA 305

Query: 300 DLILLL-----KEINSKKEISFPKNIDFIFIGTKSD--LYSTYTEEYDHLISSFTGEGLE 352
            ++L +      E   ++ I+   +   I +  K D    +T T   +         G  
Sbjct: 306 QIVLWVVDQEPTEAEKEEIITQCTDKQLILVRNKVDDLPETTPTLSENQTYHEIAISGKY 365

Query: 353 EL-INKIKSILSNKFKKLP-----FSIPSHKRHLYHLSQT----VRYLEMASLNEKDCGL 402
            L I++++S++  K   LP      +I ++ RH   L++     +R  E  ++N      
Sbjct: 366 NLGIDRLESLIY-KVADLPELTENTTIITNARHYDALTRAHASLLRVQEAMAMN---LSG 421

Query: 403 DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
           D+I+E+L+     LG+ITG  +  ++ L  IF  FCIGK
Sbjct: 422 DLISEDLKDTIAILGEITGNQITSQETLHNIFKHFCIGK 460


>gi|224437875|ref|ZP_03658822.1| tRNA modification GTPase TrmE [Helicobacter cinaedi CCUG 18818]
 gi|313144324|ref|ZP_07806517.1| tRNA modification GTPase TrmE [Helicobacter cinaedi CCUG 18818]
 gi|313129355|gb|EFR46972.1| tRNA modification GTPase TrmE [Helicobacter cinaedi CCUG 18818]
          Length = 465

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 142/466 (30%), Positives = 238/466 (51%), Gaps = 46/466 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T     AISI+RLSG   + +   +  +    PR A L   +  +   +D+ ++
Sbjct: 14  TIVAIATPVGVGAISIVRLSGEFAYNIALKLTHRDSLKPRYAHLCQIYD-ENTAIDEAIV 72

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP P S+T +D  E   HGGI+   GI+E   ++   RLAN GEF++RAF  G++DL 
Sbjct: 73  LFFPKPHSYTTQDVCEVQCHGGISSAKGIVELCLRL-GARLANAGEFTKRAFLGGRLDLA 131

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +  ++A +I S++    ++ M  + GELS       +KL  + +F E ++D+SEE + Q+
Sbjct: 132 QTHAIAGIIQSQSLEANKILMRQLKGELSGFVKTNREKLLTLLAFSEVNIDYSEEVE-QD 190

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEI-IRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           + ++  + D L        HI +  +  + +  GY + I+G  N GKSSL NAL   + A
Sbjct: 191 YITQ--MQDSLQELESCFKHIYEASIMRLGVIEGYTLSIVGKPNVGKSSLLNALLMYERA 248

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+D+ GTTRD +   L +EG +V+I DTAGIR++ D +E+ GI +T   ++ +D+I+ L
Sbjct: 249 IVSDVEGTTRDTIEESLQIEGVIVRIVDTAGIRQSPDAIEQIGIAKTKEALDRSDVIIAL 308

Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE----- 349
                      +EI         K+I  + + TKSDL   +  +Y   +S F  +     
Sbjct: 309 FDSSRAFDEKDREILDLLATHTDKHI--LLVLTKSDLPLAFDTKY---LSEFVAQNPNVL 363

Query: 350 ------------GLEELINKIKSILSNKFKKLPFSIPSH---KRHLYHLSQTVRYLEMAS 394
                       G + +I  +KS+++         + SH   K     L    +  ++ +
Sbjct: 364 QESPLYISIESGGAKAVIEALKSVINTHSGGDGLILTSHYQLKSLKDVLDSITKAYDVLN 423

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L E    L++ + ++R    +L  IT   +  QLLD +F  FC+GK
Sbjct: 424 LGE----LELFSYHIRDCITALSNITHPYEDSQLLDKLFGTFCLGK 465


>gi|307110642|gb|EFN58878.1| hypothetical protein CHLNCDRAFT_19706 [Chlorella variabilis]
          Length = 477

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 142/499 (28%), Positives = 244/499 (48%), Gaps = 87/499 (17%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCE-----FICKKKK----------------PFP 45
           TI A+ TGA   A+SIIR+SG     + +     +  +++                 P P
Sbjct: 1   TIAAIVTGAAQGAVSIIRVSGADAVAIAQQVFAPYSAQRRHAAAAGPAARQAPAAGHPDP 60

Query: 46  -------RKASLRYFFGL----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNG 94
                  +  S R ++G      G +LD+ LL+   +P S+T ED  E H HGG      
Sbjct: 61  ATHAAAWQPESHRVYYGTAIDAGGTVLDEVLLLTMLAPRSYTAEDVVEVHTHGGGVSAAR 120

Query: 95  ILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG-- 152
           +L+   +    RLA PGEF+ RAF NG++DL +AES+A LI + T      ++ G+SG  
Sbjct: 121 VLQRCLEA-GARLAQPGEFTLRAFLNGRLDLSQAESVAQLIDARTVAAADSALAGLSGGL 179

Query: 153 --ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
             E+  +  + +D L  +    +A LDF  +ED+       +++ I  L   + + +   
Sbjct: 180 GREVQRMRRECVDLLVEM----DARLDF--DEDLPPLDVPGLIDRIRRLSQQLEATLQTA 233

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           + G+++R G ++ ++G  N GKSSL NAL+  + AIVT I GTTRD++   + + G  + 
Sbjct: 234 RHGQLLRTGLQVALVGRPNVGKSSLLNALSGTERAIVTHIAGTTRDIVEAGVVIGGIPIT 293

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-----------KEINSK-------- 311
           + DTAG+RE+ D+VE+ G++R+      AD++L++            EI ++        
Sbjct: 294 LLDTAGLRESVDLVEQIGVERSMAAARQADIVLMVLDAQAGWTPGDAEIAAQITPAAAGA 353

Query: 312 ------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL-SN 364
                 +++  P  +   F    S              S+ T EGL++L   + S+  + 
Sbjct: 354 DASSAARQLGVPPAVGSRFAAVVS-------------TSAATREGLQDLQQAVLSLAGAP 400

Query: 365 KFKKLPFSIPSHKRH---LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
           +      S   ++R    L   S+ ++ ++ +  +E    +D    +LR A ++LG+++G
Sbjct: 401 QLAPGGISWAVNERQGEALIRASEALQRVQGSIADE--LPVDFWTIDLRAAVLALGEVSG 458

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               E++LD IFS+FCIGK
Sbjct: 459 EDVTEEVLDSIFSRFCIGK 477


>gi|167750134|ref|ZP_02422261.1| hypothetical protein EUBSIR_01103 [Eubacterium siraeum DSM 15702]
 gi|167656877|gb|EDS01007.1| hypothetical protein EUBSIR_01103 [Eubacterium siraeum DSM 15702]
          Length = 457

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 146/457 (31%), Positives = 227/457 (49%), Gaps = 24/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FG---LDGR 59
           + I A+ST      +S+IR+SG    +V   +   K P      +  +   +G    DG 
Sbjct: 3   DCIAAISTPMASGGVSMIRISGADALKVAAKVFIPKYPVRDIEKMDGYTAAYGDITADGT 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD G+L++F +P S+TGE++AE   HGGI V   +L+ +     + +A  GEF+++A  
Sbjct: 63  KLDDGVLLIFRAPHSYTGENTAEITCHGGIHVTKRVLQAVLSAGAV-MAQAGEFTKQALV 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+ L EAE + DLI++  +     +     G L        +++  I S I   +D+ 
Sbjct: 122 NGKLSLTEAEGVIDLINAGNDQLLSCARAQTDGALYRRIEALCEEIIAITSEIAVWIDYP 181

Query: 180 EE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E ED    +  + L   L +K +I S I+    GEI+RNG    I+G  NAGKS+L N 
Sbjct: 182 DESEDEDEIAKADWLRSTLAVKENIDSLIATYDCGEILRNGIATAIVGKPNAGKSTLMNR 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L     +IVTDI GTTRD++   + L   ++K++D AGIRET+D VE  G++R    +  
Sbjct: 242 LTGVQKSIVTDIEGTTRDIVEDTVQLGDIMLKLADCAGIRETEDTVENIGVQRMIERIGT 301

Query: 299 ADLILLL----KEI--NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-------LISS 345
           A LIL +    +E+  + K+ I        I I  KSDL +     +         +IS+
Sbjct: 302 AQLILAVFDGSRELSDDDKRLIELLHGKTVIPIINKSDLEARADTAFIENELGKAVIISA 361

Query: 346 FTGEGLEELINKIKSI--LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
            TG G +EL   IK    +SN      F     +R     +Q        +L+      D
Sbjct: 362 KTGGGADELEQAIKQRCGISNLDAGAGFLANERQRQCALSAQAAVDRAYNALH-GGMTAD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +    L  A  SL +++G    E+++D IFS+FC+GK
Sbjct: 421 VAGLELEAALSSLYELSGKTASEEVIDRIFSRFCVGK 457


>gi|57237784|ref|YP_179032.1| tRNA modification GTPase TrmE [Campylobacter jejuni RM1221]
 gi|81353660|sp|Q5HUK3|MNME_CAMJR RecName: Full=tRNA modification GTPase mnmE
 gi|57166588|gb|AAW35367.1| tRNA modification GTPase TrmE [Campylobacter jejuni RM1221]
          Length = 442

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 151/477 (31%), Positives = 234/477 (49%), Gaps = 79/477 (16%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ +
Sbjct: 3   DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF +HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+  
Sbjct: 63  MIYFKAPYSFTGEDIVEFQIHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181
           L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D++++    
Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181

Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
              E +      + ++L +I  L        SQ K G I   G+KI I+G  N GKSSL 
Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D++E+ G+  +   +
Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSL 291

Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327
           E+AD+IL +        KE         N+ K+I +              +N +FI +  
Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSA 351

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           + D+ +   EE  + ++SF  EG+     +LIN  K                       +
Sbjct: 352 QKDI-TLLKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------I 387

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S    +     L E    L++ A  L LA   L + T     +++LD +F  FC+GK
Sbjct: 388 SSEAIFRAKGLLEE--SSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|315058397|gb|ADT72726.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 442

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 151/477 (31%), Positives = 234/477 (49%), Gaps = 79/477 (16%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ +
Sbjct: 3   DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF +HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+  
Sbjct: 63  MIYFKAPYSFTGEDIVEFQIHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181
           L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D++++    
Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPP 181

Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
              E +      + ++L +I  L        SQ K G I   G+KI I+G  N GKSSL 
Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D++E+ G+  +   +
Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSL 291

Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327
           E+AD+IL +        KE         N+ K+I +              +N +FI +  
Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSA 351

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           + D+ +   EE  + ++SF  EG+     +LIN  K                       +
Sbjct: 352 QKDI-TLLKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------I 387

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S    +     L E    L++ A  L LA   L + T     +++LD +F  FC+GK
Sbjct: 388 SSEAIFRAKGLLEE--SSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|78357435|ref|YP_388884.1| tRNA modification GTPase TrmE [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123552067|sp|Q30YQ7|MNME_DESDG RecName: Full=tRNA modification GTPase mnmE
 gi|78219840|gb|ABB39189.1| tRNA modification GTPase trmE [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 468

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 142/470 (30%), Positives = 229/470 (48%), Gaps = 36/470 (7%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FP--RKASLRYFFGLDG 58
           +H  +TI AV+T      + IIRLSGP    +   +     P F   R   L +    DG
Sbjct: 4   HHGTDTIAAVATPLGQGGVGIIRLSGPRSHAILTALFDSTSPGFSGFRPRVLHHGHIHDG 63

Query: 59  ----RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               RILD  L +  P+P +FTGED  E + HGG A++  +L+ + +    R A  GEF+
Sbjct: 64  TPQRRILDDVLAVHMPAPRTFTGEDVVEINCHGGPAILAAVLDAVLRQ-GARPAAHGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAF NG++DL +AE++A++I++      RL+   + G L        ++L  +R  +  
Sbjct: 123 RRAFLNGRMDLTQAEAVAEMIAAPAAEGVRLAQARLDGMLGRHINALRERLELVRVQLCV 182

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF E+E V+  +  + ++ +    + I   I   +     R G ++V+ G  NAGKSS
Sbjct: 183 AVDFPEDE-VECLAPADFMHAVEETADAIRKLIGNYERARCWREGAQVVLAGQVNAGKSS 241

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL  +  AIVTD+PGTTRD L   + L+G  V++ DTAG+RET DIVE+EG++ +  
Sbjct: 242 LLNALLGRKRAIVTDVPGTTRDFLEESITLDGLAVRLVDTAGLRETGDIVEQEGVRMSRD 301

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT- 347
               ADL+LL+ +       + ++ ++  +    + +  K+D  +   +E D  + S   
Sbjct: 302 LAAQADLVLLVVDSRLGTGPHEQELMAAMEAGSVLVVLNKTD--AATEDELDRCVRSLAG 359

Query: 348 ----------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
                     G+G++ L   ++ ++  +   L     +      +L QT          E
Sbjct: 360 RPHVAVSAREGKGMDSLAAAVREMVLRRSNALTADAAASD-MAPNLRQTEALRRALEELE 418

Query: 398 -------KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                       D+    L  A   L +ITG    + +L+ IF  FCIGK
Sbjct: 419 ALAADIVSGVPYDLAGVRLESACSVLSEITGETTPDDILNRIFDSFCIGK 468


>gi|291556568|emb|CBL33685.1| tRNA modification GTPase TrmE [Eubacterium siraeum V10Sc8a]
          Length = 457

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 227/457 (49%), Gaps = 24/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FG---LDGR 59
           + I A+ST      +S+IR+SG    +V   +   K P      +  +   +G    DG 
Sbjct: 3   DCIAAISTPMASGGVSMIRISGADALEVAAKVFIPKYPVRDIEKMDGYTAAYGDITADGT 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD G+L++F +P S+TGE++AE   HGGI V   +L+ +     + +A  GEF+++A  
Sbjct: 63  KLDDGVLLIFRAPHSYTGENTAEITCHGGIHVTKRVLQAVLSAGAV-MAQAGEFTKQALV 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+ L EAE + DLI++  +     +     G L        +++  I S I   +D+ 
Sbjct: 122 NGKLSLTEAEGVIDLINAGNDQLLSCARAQTDGALYRRIEALCEEIIAITSEIAVWIDYP 181

Query: 180 EE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E ED    +  + L  +  +K +I S I+    GEI+RNG    I+G  NAGKS+L N 
Sbjct: 182 DESEDEDEIAKADWLKSVTAVKENIDSLIATYDCGEILRNGIATAIVGKPNAGKSTLMNR 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L     +IVTDI GTTRD++   + L   ++K++D AGIRET+D VE  G++R    +  
Sbjct: 242 LTGVQKSIVTDIEGTTRDIVEDTVQLGDIMLKLADCAGIRETEDTVENIGVQRMIERIGT 301

Query: 299 ADLILLL----KEI--NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-------LISS 345
           A LIL +    +E+  + K+ I        I I  KSDL +     +         +IS+
Sbjct: 302 AQLILAVFDGSRELSDDDKRLIELLHGKTVIPIINKSDLEARADTAFIENELGKAVIISA 361

Query: 346 FTGEGLEELINKIKSI--LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
            TG G +EL   IK    +SN      F     +R     +Q        +L+      D
Sbjct: 362 KTGGGADELEQAIKQRCGISNLDAGAGFLANERQRQCALSAQAAVDRAYNALH-GGMTAD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +    L  A  SL +++G    E+++D IFS+FC+GK
Sbjct: 421 VAGLELEAALSSLYELSGKTASEEVIDRIFSRFCVGK 457


>gi|283954515|ref|ZP_06372034.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793919|gb|EFC32669.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           414]
          Length = 442

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 149/454 (32%), Positives = 232/454 (51%), Gaps = 33/454 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A+ST     +ISI+RLSG    +    + +K K  PR A+    F  +  I+D+ +
Sbjct: 3   DTIVAISTAHGVGSISIVRLSGERALEFALKLSRKTKLTPRYATFTKLFNQNNEIIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F SP SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+  
Sbjct: 63  MIYFKSPFSFTGEDIVEFQTHGGFSVSEILLEELVSL-GARLALAGEFSKRACLNGKMTP 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181
           L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D++++    
Sbjct: 122 LKALNIQDLILSKSVLAAKIIARNMQGNLGELLEKIRIDLVKTLAFVETSIDYADDDLPS 181

Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
              E +      + ++L +I  L        SQ K G I   G+KI I+G  N GKSSL 
Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIIGKPNVGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D +E+ G+  +   +
Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDTIEQIGVALSKKSL 291

Query: 297 ENADLILLLKEINSKKE------ISFPKNID--FIFIGTKSDLYSTY-TEEYDHLISSFT 347
           E+AD+IL + + + K++          +NID    +I  K+DL S +   +  + I    
Sbjct: 292 EDADIILAVFDASRKEDEEDKKIFKLLENIDKKIFWILNKTDLESIFENTQNKNFIKLSA 351

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKR-HLYHLSQTVRYLEMASLNEKDCGLDIIA 406
            + +  L  ++++ L N F      + S    +   +S    +     L E    L++ A
Sbjct: 352 QKDIALLKQELQNYL-NSFDSEGIMVSSLDLINACKISSEAIFRAKGLLKEN--SLELFA 408

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               LA   L + T     +++LD IF  FC+GK
Sbjct: 409 FEFNLAINELARFTKDFQRDEILDEIFGNFCLGK 442


>gi|325270021|ref|ZP_08136629.1| thiophene and furan oxidation protein ThdF [Prevotella multiformis
           DSM 16608]
 gi|324987606|gb|EGC19581.1| thiophene and furan oxidation protein ThdF [Prevotella multiformis
           DSM 16608]
          Length = 483

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 142/447 (31%), Positives = 231/447 (51%), Gaps = 33/447 (7%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDG--RILDKGLLIVFPSP 72
           AI IIR+SG    +  + I +  K  P    R  +L Y   LD   + +D  L+ VF +P
Sbjct: 45  AIGIIRVSGVGAIEATDRIFRGVKGRPLAEARGNTLHYGEILDKEKKAVDDVLVSVFRAP 104

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            S+TGEDS E   HG + V+N ++  L      R A PGEF++RA+ NGK+DL +AE++A
Sbjct: 105 HSYTGEDSTEISCHGSVYVLNQVMRLLID-AGCRQAQPGEFTQRAYLNGKMDLSQAEAVA 163

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI++      +L++  + G  SS   +  ++L  + S +E +LDFS+ E+++     E+
Sbjct: 164 DLITASNRASHQLALSQLKGHFSSELSRLREQLLRMTSLLELELDFSDHEELEFADRAEL 223

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
                 + + I+S     + G I++ G  + I+G +N GKS+L N L  ++ AIV++I G
Sbjct: 224 SALAAKIHDRIASLTKSFETGNILKKGVPVAIIGKTNVGKSTLLNCLLHEEKAIVSNIHG 283

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL-------L 305
           TTRDV+    ++ G   +  DTAG+R TDD +E+ GI+R + +++ A ++L        +
Sbjct: 284 TTRDVIEDTTEINGVTFRFIDTAGLRHTDDQIERLGIRRAYEKMKEAAVVLWVNDRQPTI 343

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLY-----STYTEEYDHLISSFTGE---GLEELINK 357
           +E    + ++  K +  +F   K D       ST  E     IS+   +   GLE  I  
Sbjct: 344 EECREMRHLAEGKKLITVF--NKMDDMPVRPGSTGLEAQTVYISAKLKQNIAGLETAIYN 401

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGL--DIIAENLRLASV 414
              I       +  +   H   L H   ++ R ++   L     GL  D+++E+LR+   
Sbjct: 402 AAGIPEIDENSIIVTSVRHYDALVHADASILRVIDALQL-----GLSGDLVSEDLRICLD 456

Query: 415 SLGKITGC-VDVEQLLDIIFSKFCIGK 440
            L  ITG  +   ++LD IF  FCIGK
Sbjct: 457 QLADITGGQITTHEVLDNIFRHFCIGK 483


>gi|121612630|ref|YP_001000638.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005565|ref|ZP_02271323.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|166200472|sp|A1VZU7|MNME_CAMJJ RecName: Full=tRNA modification GTPase mnmE
 gi|87248887|gb|EAQ71850.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 442

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 151/477 (31%), Positives = 234/477 (49%), Gaps = 79/477 (16%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ +
Sbjct: 3   DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+  
Sbjct: 63  MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181
           L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D++++    
Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181

Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
              E +      + ++L +I  L        SQ K G I   G+KI I+G  N GKSSL 
Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + AIV+DI GTTRD +  +  L  +L++I DTAGIRE+ D++E+ G+  +   +
Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEENFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSL 291

Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327
           E+AD+IL +        KE         N+ K+I +              +N +FI +  
Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSA 351

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           + D+ +   EE  + ++SF  EG+     +LIN  K                       +
Sbjct: 352 QKDI-TLLKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------I 387

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S    +     L E    L++ A  L LA   L + T     +++LD +F  FC+GK
Sbjct: 388 SSEAIFRAKGLLEE--SSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|148926123|ref|ZP_01809809.1| putative thiophene and furan oxidation protein [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|145845602|gb|EDK22694.1| putative thiophene and furan oxidation protein [Campylobacter
           jejuni subsp. jejuni CG8486]
          Length = 442

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 146/456 (32%), Positives = 227/456 (49%), Gaps = 37/456 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ +
Sbjct: 3   DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+  
Sbjct: 63  MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181
           L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D++++    
Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGKLLEKIRTDLVKTLAFVETSIDYADDDLPS 181

Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
              E +      + ++L +I  L        SQ K G I   G+KI I+G  N GKSSL 
Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D++E+ G+  +   +
Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSL 291

Query: 297 ENADLILLLKEINSKKEISFPKNIDFI--------FIGTKSDLYSTYTEEYDHLISSFTG 348
           E+AD+IL + + +  ++    K  D +        +I  KSDL + +    +    +F  
Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNK---NFIK 348

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK----DCGLDI 404
              ++ I  +K  L N F    F           L    +    A    K    +  L++
Sbjct: 349 LSAQKDITLLKEELQNYFN--SFDSEGIMVSSLDLINACKISSEAIFRAKGLLEESSLEL 406

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  L LA   L + T     +++LD +F  FC+GK
Sbjct: 407 FAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|325854323|ref|ZP_08171522.1| tRNA modification GTPase TrmE [Prevotella denticola CRIS 18C-A]
 gi|325484117|gb|EGC87051.1| tRNA modification GTPase TrmE [Prevotella denticola CRIS 18C-A]
          Length = 510

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 228/442 (51%), Gaps = 23/442 (5%)

Query: 19  AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG----LDGRILDKGLLIVFPSP 72
           AI I+R+SG    +V +  F  KK+K           +G     DG  +D  L+ VF +P
Sbjct: 72  AIGIVRVSGEGALEVTDRIFRSKKRKHLTEAGGYTLHYGEILDKDGETIDDVLVSVFRAP 131

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            S+TGEDS E   HG   ++N +++ L K    R A PGE+++RA+ NGK+DL +AE++A
Sbjct: 132 HSYTGEDSTEIACHGSAYILNKVVQVLIKA-GCRQAQPGEYTQRAYLNGKMDLSQAEAVA 190

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI++      ++++  + G  SS   Q   +L  + S +E +LDFS+ E+++     E+
Sbjct: 191 DLIAASNRASHQIALSQLKGHFSSELSQLRKQLLKMTSLLELELDFSDHEELEFADRSEL 250

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
                 + N I +     + G  ++ G  + I+G +N GKS+L N L  ++ AIV++I G
Sbjct: 251 KVLAEKIHNRIITLTESFETGNALKRGIPVAIIGKTNVGKSTLLNCLLHEEKAIVSNIHG 310

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL------- 305
           TTRD +    +++G   +  DTAG+R TDD +E+ GI+R + +++ A ++L +       
Sbjct: 311 TTRDTIEDTTEIQGVTFRFIDTAGLRHTDDQIEQLGIRRAYAKLDEASIVLWVVDRQPTT 370

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE------GLEELINKIK 359
           +E    + ++  K +  +F    +   +    E +  +   + +       LE  I +  
Sbjct: 371 EERMEMRHLTEEKKLITVFNKMDTMPAAARCPEVNPQVIYISAKLKQNITALETAIYEAA 430

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
            + +     +  +   H   L H  +++  + + +LN+   G D+I+E+LR+    L  I
Sbjct: 431 GLQTINENSVIITSARHYDALSHADESILRV-INALNDGLSG-DLISEDLRICLDQLADI 488

Query: 420 TGC-VDVEQLLDIIFSKFCIGK 440
           TG  +   ++L  IF  FCIGK
Sbjct: 489 TGGQITTHEVLGNIFKNFCIGK 510


>gi|294781805|ref|ZP_06747138.1| tRNA modification GTPase TrmE [Fusobacterium sp. 1_1_41FAA]
 gi|294481915|gb|EFG29683.1| tRNA modification GTPase TrmE [Fusobacterium sp. 1_1_41FAA]
          Length = 455

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 242/459 (52%), Gaps = 31/459 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLDG-RIL 61
           +TI A+ST      ISI+R+SG     + E  F  K KK    K  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRAKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +L+ + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEQVLQVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ EE
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             + +   + +++++     +I   IS    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 183 -GIDDPVPENLVDNLKKASAEIKDLISSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++    + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININSIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           IL + +               IN+ K I     ID   I  + DL      +    IS+ 
Sbjct: 302 ILYVIDTSREIDEEDFRIYEIINTDKVIGILNKID---IKKEIDLSKFSKIDKWIEISAL 358

Query: 347 TGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           +  G++ L ++I   + N+      +KL  +   HK  L   ++ +  L +    +    
Sbjct: 359 SKIGIDNLEDQIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMGLP 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++A +++ A  SL ++TG +  E LL+ IFS FC+GK
Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLNHIFSNFCVGK 455


>gi|307566127|ref|ZP_07628585.1| tRNA modification GTPase TrmE [Prevotella amnii CRIS 21A-A]
 gi|307345315|gb|EFN90694.1| tRNA modification GTPase TrmE [Prevotella amnii CRIS 21A-A]
          Length = 447

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 143/456 (31%), Positives = 242/456 (53%), Gaps = 34/456 (7%)

Query: 7   TIFAVSTGALPS-AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63
           TI A++T  LP  AI +IR+SG     +   I  K        +L Y     + G+++D+
Sbjct: 4   TICALAT--LPGGAIGVIRVSGKDAIVIVNRIFSKDILSMPANTLCYGNIIDMAGKVIDE 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++ ++ +P S+TGE++ E   HG   ++  +L  L +    + A PGEF++RA+ NGK+
Sbjct: 62  VVVSIWHAPHSYTGENAVEISCHGSAYILKEVLHLLIEAGCYQ-ALPGEFTQRAYLNGKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADL++S  +   RL++  M G  S+       +L  I S +E +LDFSE ED
Sbjct: 121 DLSQAEAVADLVASSNKASYRLALSQMKGHFSNELSSLRKRLLKITSLLELELDFSEHED 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     E+++    +   + S +   K+G+ ++ G  + I+G +N GKS+L NAL  ++
Sbjct: 181 LEFADRTELISLTDEIDKKVLSLLHSFKIGQALKEGVAVAIIGKTNVGKSTLLNALLGEE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV++I GTTRDV+    ++ G   +  DTAGIR+T D VEK GI+RT+  ++ A +++
Sbjct: 241 RAIVSNIEGTTRDVIEDVTEINGISFRFIDTAGIRQTTDEVEKLGIERTYKMLDKAQMVI 300

Query: 304 LLKEIN-SKKEI-SFPKNID---FIFIGTKSDLYSTYTEEYDHL---ISSFTGEGLEELI 355
            + + N S+KE     K +    FI +  K D           +   +S+  G  +EEL 
Sbjct: 301 WVIDDNPSRKEYEDIKKKVGERPFIIVRNKVDTIVNKEALPSFITLSVSAKEGTNIEELK 360

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL----------DII 405
             I       +KK   +IP+   +   ++    Y  +   +E  C +          D++
Sbjct: 361 QAI-------YKKA--NIPAFNENSVIVTNARHYDVLTKAHEALCRVHNAFKANLPGDLV 411

Query: 406 AENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
           AE+L+     LG+ITG  +  ++ L+ IF  FCIGK
Sbjct: 412 AEDLKDVLSLLGEITGTQISSQETLNNIFKHFCIGK 447


>gi|255994565|ref|ZP_05427700.1| tRNA modification GTPase TrmE [Eubacterium saphenum ATCC 49989]
 gi|255993278|gb|EEU03367.1| tRNA modification GTPase TrmE [Eubacterium saphenum ATCC 49989]
          Length = 453

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 138/457 (30%), Positives = 241/457 (52%), Gaps = 30/457 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKASLRYFFGL---DGR 59
           TI A+ST     AI +I++SG    ++ E +     K++    +  + R ++G    D R
Sbjct: 4   TIAAISTAGY-GAIGVIKISGNRSKKILEELFKNAGKQRIESDKWQNKRLYYGTIEQDNR 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ + +   +P ++T ED  E + HG       IL+ +       LA PGEF++ AF 
Sbjct: 63  VLDEVMAVYMKAPHTYTREDVVEIYTHGNAVCQRRILDAVID-EGAELAEPGEFTKLAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ ++I++++E    L+++G++G+     G    +L  I   +  ++D+ 
Sbjct: 122 NGRIDLTQAEAIIEMINAKSEEAFDLALQGLAGQNERSIGNARVRLQEILVEMAVNIDYP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +E D++  + ++ +  I  + N++   I   +   + R+G ++ ILG  NAGKSSL N L
Sbjct: 182 DE-DIEEINYQKTIESIEDVINELDEVIDITRKRRVYRDGIRVAILGKPNAGKSSLLNEL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AI++DI GTTRDV+   + L G  + + DTAGIRE+D+++EKEGI R++     A
Sbjct: 241 LMEDRAIISDIEGTTRDVIEEQILLSGIPITLIDTAGIRESDNVIEKEGIDRSYKAANEA 300

Query: 300 DLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDL-YSTYTEEYDHL------IS 344
           D+++ L  I+S K         I   +    +   +KSDL  S   +E   L      IS
Sbjct: 301 DVVVYL--IDSTKGPDGEDENVIKRLRADSLVVCFSKSDLPMSAKNKENKGLFDKSIDIS 358

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLD 403
                G+EEL ++++ I     K +  +     R +Y   +  + L E     +K   LD
Sbjct: 359 IRNKSGMEELKSELRKIAEE--KNVAKTEGKRDRTVYEAIKAKKSLNEAKKALKKGLSLD 416

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +++ A   LG ITG    E++++ +F +FC+GK
Sbjct: 417 FAEVDVKNAYAYLGNITGDTASEEVINKVFERFCLGK 453


>gi|205356679|ref|ZP_03223440.1| putative thiophene and furan oxidation protein [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|205345417|gb|EDZ32059.1| putative thiophene and furan oxidation protein [Campylobacter
           jejuni subsp. jejuni CG8421]
          Length = 442

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 146/456 (32%), Positives = 227/456 (49%), Gaps = 37/456 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ +
Sbjct: 3   DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+  
Sbjct: 63  MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181
           L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D++++    
Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181

Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
              E +      + ++L +I  L        SQ K G I   G+KI I+G  N GKSSL 
Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D++E+ G+  +   +
Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSL 291

Query: 297 ENADLILLLKEINSKKEISFPKNIDFI--------FIGTKSDLYSTYTEEYDHLISSFTG 348
           E+AD+IL + + +  ++    K  D +        +I  KSDL + +    +    +F  
Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNK---NFIK 348

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK----DCGLDI 404
              ++ I  +K  L N F    F           L    +    A    K    +  L++
Sbjct: 349 LSAQKDITLLKEELQNYFN--SFDSEGIMVSSLDLINACKISSEAIFRAKGLLEESSLEL 406

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  L LA   L + T     +++LD +F  FC+GK
Sbjct: 407 FAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|256851670|ref|ZP_05557058.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 27-2-CHN]
 gi|260661613|ref|ZP_05862525.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 115-3-CHN]
 gi|256615628|gb|EEU20817.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 27-2-CHN]
 gi|260547670|gb|EEX23648.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 115-3-CHN]
          Length = 460

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 152/467 (32%), Positives = 242/467 (51%), Gaps = 42/467 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---G 58
           E +TI A+ST      ISI+RLSG    ++   + K K    + AS    +G  +D    
Sbjct: 6   EFDTIAAISTPIGEGGISIVRLSGEDAVKIANKLFKGK-DLSKVASHTINYGHIIDPETS 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ ++ V  +P++FT ED  E + HGGI V N IL+ L K    R+A  GEF++RAF
Sbjct: 65  KVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLKH-GARMAEAGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR-------SF 171
            NG+IDL +AES+ D++ ++T+  R+++M  + G L       +DK+ ++R       + 
Sbjct: 124 VNGRIDLTQAESVMDIVRAKTDKARQVAMNQLEGGL-------LDKIRNMRQEILDTLAN 176

Query: 172 IEADLDFSE--EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           +E ++D+ E   + V     +E    ++   N +    +QGK   I+RNG    I+G  N
Sbjct: 177 VEVNIDYPEYDADQVTATQMQETSKKVIEAINRLLKTANQGK---IMRNGLATAIVGRPN 233

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKSSL N L + D AIVTD+ GTTRD L   + + G  +K+ DTAGI  T+D VEK G+
Sbjct: 234 VGKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTEDKVEKIGV 293

Query: 290 KRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
           +R+   +E ADL+LLL   +       +K I + KN   I +  K+DL     +E   + 
Sbjct: 294 ERSKKAIEQADLVLLLLNASEALTTEDEKLIDYTKNKKRIVVLNKADLGIKLNKEDLKVQ 353

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLEMAS 394
           +  +      L  +  + L     KL FS         + +++R    L +    L    
Sbjct: 354 TQASIVVTSILKEENLNELEEAISKLFFSGIHNSNDEVLVTNQRQAGLLEKAKDQLTDVV 413

Query: 395 LNEKDCG-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +   LDI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 414 DAVDNDVPLDIAQIDFTGAWDTLGEITGDSAPDELITQLFSQFCLGK 460


>gi|297205279|ref|ZP_06922675.1| tRNA modification GTPase TrmE [Lactobacillus jensenii JV-V16]
 gi|297149857|gb|EFH30154.1| tRNA modification GTPase TrmE [Lactobacillus jensenii JV-V16]
          Length = 483

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 152/467 (32%), Positives = 242/467 (51%), Gaps = 42/467 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---G 58
           E +TI A+ST      ISI+RLSG    ++   + K K    + AS    +G  +D    
Sbjct: 29  EFDTIAAISTPIGEGGISIVRLSGEDAVKIANKLFKGKD-LSKVASHTINYGHIIDPETS 87

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ ++ V  +P++FT ED  E + HGGI V N IL+ L K    R+A  GEF++RAF
Sbjct: 88  KVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLKH-GARMAEAGEFTKRAF 146

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR-------SF 171
            NG+IDL +AES+ D++ ++T+  R+++M  + G L       +DK+ ++R       + 
Sbjct: 147 VNGRIDLTQAESVMDIVRAKTDKARQVAMNQLEGGL-------LDKIRNMRQEILDTLAN 199

Query: 172 IEADLDFSE--EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           +E ++D+ E   + V     +E    ++   N +    +QGK   I+RNG    I+G  N
Sbjct: 200 VEVNIDYPEYDADQVTATQMQETSKKVIEAINRLLKTANQGK---IMRNGLATAIVGRPN 256

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKSSL N L + D AIVTD+ GTTRD L   + + G  +K+ DTAGI  T+D VEK G+
Sbjct: 257 VGKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTEDKVEKIGV 316

Query: 290 KRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
           +R+   +E ADL+LLL   +       +K I + KN   I +  K+DL     +E   + 
Sbjct: 317 ERSKKAIEQADLVLLLLNASEALTTEDEKLIDYTKNKKRIVVLNKADLGIKLNKEDLKVQ 376

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLEMAS 394
           +  +      L  +  + L     KL FS         + +++R    L +    L    
Sbjct: 377 TQASIVVTSILKEENLNELEEAISKLFFSGIHNSNDEVLVTNQRQAGLLEKAKDQLTDVV 436

Query: 395 LNEKDCG-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +   LDI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 437 DAVDNDVPLDIAQIDFTGAWDTLGEITGDSAPDELITQLFSQFCLGK 483


>gi|86150688|ref|ZP_01068909.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596778|ref|ZP_01100015.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562575|ref|YP_002344354.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|14195292|sp|Q9PNX9|MNME_CAMJE RecName: Full=tRNA modification GTPase mnmE
 gi|85838869|gb|EAQ56137.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88191619|gb|EAQ95591.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360281|emb|CAL35076.1| putative tRNA modification GTPase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|284926189|gb|ADC28541.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315927915|gb|EFV07238.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315928514|gb|EFV07818.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           305]
          Length = 442

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 151/477 (31%), Positives = 233/477 (48%), Gaps = 79/477 (16%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ +
Sbjct: 3   DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+  
Sbjct: 63  MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181
           L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D++++    
Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181

Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
              E +      + ++L +I  L        SQ K G I   G+KI I+G  N GKSSL 
Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + AIV+DI GTTRD +  +  L  +L++I DTAGIRE+ D++E+ G+  +   +
Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEENFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSL 291

Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327
           E+AD+IL +        KE         N+ K+I +              +N +FI +  
Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSA 351

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           + D+ +   EE  + ++SF  EG+     +LIN  K                       +
Sbjct: 352 QKDI-TLLKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------I 387

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S    +     L E    L+  A  L LA   L + T     +++LD +F  FC+GK
Sbjct: 388 SSEAIFRAKGLLEE--SSLEFFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|86150742|ref|ZP_01068958.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124454|ref|YP_004066458.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841912|gb|EAQ59158.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018176|gb|ADT66269.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 442

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 151/477 (31%), Positives = 233/477 (48%), Gaps = 79/477 (16%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ +
Sbjct: 3   DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+  
Sbjct: 63  MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181
           L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D++++    
Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181

Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
              E +      + ++L +I  L        SQ K G I   G+KI I+G  N GKSSL 
Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D++E+ G+  +   +
Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSL 291

Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327
           E+AD+IL +        KE         N+ K+I +              +N +FI +  
Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSA 351

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           + D+ +   EE  + ++SF  EG+     +LIN  K                       +
Sbjct: 352 QKDI-TLLKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------I 387

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S    +     L E    L++ A  L LA   L + T     +++LD +F  FC+GK
Sbjct: 388 SSEAIFRAKGLLEE--SSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|291531889|emb|CBK97474.1| tRNA modification GTPase TrmE [Eubacterium siraeum 70/3]
          Length = 457

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 146/457 (31%), Positives = 228/457 (49%), Gaps = 24/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FG---LDGR 59
           + I A+ST      +S+IR+SG    +V   +   K P      +  +   +G    DG 
Sbjct: 3   DCIAAISTPMASGGVSMIRISGADALEVAAKVFIPKYPVRDIEKMDGYTAAYGDITADGT 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD G+L++F +P S+TGE++AE   HGGI V   +L+ +     + +A  GEF+++A  
Sbjct: 63  KLDDGVLLIFRAPHSYTGENTAEITCHGGIHVTKRVLQAVLSAGAV-MAQAGEFTKQALV 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+ L EAE + DLI++  +     +     G L        +++  I S I   +D+ 
Sbjct: 122 NGKLSLTEAEGVIDLINAGNDQLLSCARAQTDGALYRRIEALCEEIIAITSEIAVWIDYP 181

Query: 180 EE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E ED    +  + L  +  +K +I S I+    GEI+RNG    I+G  NAGKS+L N 
Sbjct: 182 DESEDEDEIAKADWLKSVTAVKENIDSLIATYDCGEILRNGIATAIVGKPNAGKSTLMNR 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L     +IVTDI GTTRD++   + L   ++K++D AGIRET+D VE  G++R    +  
Sbjct: 242 LTGVQKSIVTDIEGTTRDIVEDTVQLGDIMLKLADCAGIRETEDTVENIGVQRMIERIGT 301

Query: 299 ADLILLL----KEI--NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY--DHL-----ISS 345
           A LIL +    +E+  + K+ I        I I  KSDL +     +  + L     IS+
Sbjct: 302 AQLILAVFDGSRELSDDDKRLIELLHGKTVIPIINKSDLEARADTAFIENELGKAVKISA 361

Query: 346 FTGEGLEELINKIKSI--LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
            TG G +EL   IK    +SN      F     +R     +Q        +L+      D
Sbjct: 362 KTGGGADELEQAIKQRCGISNLDAGAGFLANERQRQCALSAQAAVDRAYNALH-GGMTAD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +    L  A  SL +++G    E+++D IFS+FC+GK
Sbjct: 421 VAGLELEAALSSLYELSGKTASEEVIDRIFSRFCVGK 457


>gi|86152727|ref|ZP_01070932.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843612|gb|EAQ60822.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 442

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 151/477 (31%), Positives = 232/477 (48%), Gaps = 79/477 (16%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ +
Sbjct: 3   DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLIPRHATFTKLFNQNNEIIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+  
Sbjct: 63  MIYFKTPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181
           L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D++++    
Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181

Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
              E +      + ++L +I  L        SQ K G I   G+KI I+G  N GKSSL 
Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D +E+ G+  +   +
Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDTIEQIGVALSKKSL 291

Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327
           E+AD+IL +        KE         N+ K+I +              +N +FI +  
Sbjct: 292 EDADIILAVFDASRVQDKEDGKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSA 351

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           + D+ +   EE  + ++SF  EG+     +LIN  K                       +
Sbjct: 352 QKDI-TLLKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------I 387

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S    +     L E    L++ A  L LA   L + T     +++LD +F  FC+GK
Sbjct: 388 SSEAIFRAKGLLEE--SSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|327313587|ref|YP_004329024.1| tRNA modification GTPase TrmE [Prevotella denticola F0289]
 gi|326945796|gb|AEA21681.1| tRNA modification GTPase TrmE [Prevotella denticola F0289]
          Length = 510

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/442 (29%), Positives = 227/442 (51%), Gaps = 23/442 (5%)

Query: 19  AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG----LDGRILDKGLLIVFPSP 72
           AI I+R+SG    +V +  F  KK K           +G     DG  +D  L+ VF +P
Sbjct: 72  AIGIVRVSGEGALEVTDRIFRSKKGKHLTEAGGYTLHYGEILDKDGETIDDVLVSVFRTP 131

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            S+TGEDS E   HG   ++N +++ L K    R A PGE+++RA+ NGK+DL +AE++A
Sbjct: 132 HSYTGEDSTEIACHGSAYILNKVVQVLIKA-GCRQAQPGEYTQRAYLNGKMDLSQAEAVA 190

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI++      ++++  + G  SS   Q   +L  + S +E +LDFS+ E+++     E+
Sbjct: 191 DLIAASNRASHQIALSQLKGHFSSELSQLRKQLLKMTSLLELELDFSDHEELEFADRSEL 250

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
                 + N I +     + G  ++ G  + I+G +N GKS+L N L  ++ AIV++I G
Sbjct: 251 KVLAEKIHNRIITLTESFETGNALKRGIPVAIIGKTNVGKSTLLNCLLHEEKAIVSNIHG 310

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL------- 305
           TTRD +    +++G   +  DTAGIR TDD +E+ GI+R + +++ A ++L +       
Sbjct: 311 TTRDTIEDTTEIQGVTFRFIDTAGIRHTDDQIEQLGIRRAYEKLDEASIVLWVVDRQPTT 370

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE------GLEELINKIK 359
           +E    + ++  K +  +F    +   +    E +  +   + +       LE  I +  
Sbjct: 371 EERMEMRHLTEEKKLITVFNKMDTMPAAARCPEVNPQVIYISAKLKQNITALETAIYEAA 430

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
            + +     +  +   H   L H  +++  + + +LN+   G D+I+E+LR+    L  I
Sbjct: 431 GLQTINENSVIITSARHYDALSHADESILRV-INALNDGLSG-DLISEDLRICLDQLADI 488

Query: 420 TGC-VDVEQLLDIIFSKFCIGK 440
           TG  +   ++L  IF  FCIGK
Sbjct: 489 TGGQITTHEVLGNIFKNFCIGK 510


>gi|52627366|gb|AAU84697.1| tRNA modification GTPase TrmE [Prevotella intermedia]
          Length = 467

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/459 (29%), Positives = 238/459 (51%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63
           ETI A++T     AI +IR+SG    ++ + I  +        +L Y      D + +D+
Sbjct: 12  ETICALATQP-GGAIGVIRVSGSKAIEIVDSIFSRPILNAPANTLHYGEILDKDHQTIDE 70

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++ ++ +P S+TGEDS E   HG   ++  +L  L +  N R A PGE+++RA+ NGK+
Sbjct: 71  VVVSIWRAPHSYTGEDSVEISCHGSAYILEQVLHRLIE-SNCRQAKPGEYTQRAYLNGKM 129

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL + E++ADLI+S  +   +L++  + G  SS      ++L  I S +E +LDFS+ E+
Sbjct: 130 DLSQTEAVADLIASTNKASYKLALSQLKGHFSSELSTLRNQLLKINSLLELELDFSDHEE 189

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     E++     +   +++     K G+ ++NG  + I+G +N GKS+L N L + +
Sbjct: 190 LEFADRTELIALSEEIDRKVTTLARSFKTGQALKNGIPVAIIGKTNVGKSTLLNRLLRDN 249

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV++I GTTRD++   + + G      DTAGIR+T D VE+ GI+RT   +E A ++L
Sbjct: 250 RAIVSNIHGTTRDIIEDTISINGVDFHFIDTAGIRKTTDYVEQLGIERTLATLEKAQIVL 309

Query: 304 LL-----KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG---------E 349
            +      E   K+ ++   +   I +  K D  +  T + +H  +S             
Sbjct: 310 WVVDNEPTESEKKEILAQCTDKHLILVHNKVDDLTEPTNQQNHAATSHDSTYTYHEIAIS 369

Query: 350 GLEEL-INKIKSILSNKFKKLP-----FSIPSHKRHLYHLSQT-VRYLEMASLNEKDCGL 402
           G   L IN++++++  K   LP      +I ++ RH   L++     L +          
Sbjct: 370 GKYNLGINQLEALIY-KVADLPEITENTTIITNARHYDALTRAHASLLRVQEAMAMSLSG 428

Query: 403 DIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440
           D+I+E+L+     L +ITG  +  ++ L  IF  FCIGK
Sbjct: 429 DLISEDLKDTISILAEITGDQITPQETLHNIFKHFCIGK 467


>gi|299135903|ref|ZP_07029087.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX8]
 gi|298602027|gb|EFI58181.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX8]
          Length = 506

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 144/498 (28%), Positives = 234/498 (46%), Gaps = 65/498 (13%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-----GRI 60
           +TI A+ST      I I+RL+GP    +   + +  +P    A  R+   LD      + 
Sbjct: 11  DTIVAISTPPGRGGIGIVRLAGPQSLPIAAQLLQLTQPL-EHARARFARVLDSADPNAKT 69

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD  ++  F +P S+TG+D  E   HG   V+  I+   A     RLA PGEF++RAF +
Sbjct: 70  LDDAIVTAFLAPHSYTGDDLIEIAAHGSPVVLEAIVRA-ALSHGARLATPGEFTQRAFLS 128

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS- 179
           G++DL +AE++ DLI+++T  Q R++ + M G +S       + L H+ + +EA +DF+ 
Sbjct: 129 GRLDLTQAEAVHDLIAAQTLDQARVAAQQMGGAMSRRVAPAKESLLHLIALLEAGMDFAS 188

Query: 180 -EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV      ++   IL ++  + +  +  + G+++R+G  + ++G  NAGKSSLFN 
Sbjct: 189 GELDDVDVVPPSQIEAAILSVQTPLEALAASFRHGQMLRSGASLALVGRPNAGKSSLFNR 248

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR----ETDDIVEKEGIKRTFL 294
           L ++D AIVT +PGTTRD +   L L G  +++ DTAG+R       D  E  GI R+  
Sbjct: 249 LLERDRAIVTPLPGTTRDTVEESLALGGIPLRLIDTAGLRLQGDRPADEAEALGIARSHE 308

Query: 295 EVENADLILLLKEIN---------------------------------SKKEISF-PKNI 320
            + +ADL+LL+ +                                   S K  +F  K  
Sbjct: 309 ALADADLVLLIHDATQTMTEEERTLAASLEGRPHLLVLNKIDLQGSDFSLKSTAFMSKGT 368

Query: 321 DFIFIGTKSDLYSTYTEEY-----------------DHLISSFTGEGLEELINKI-KSIL 362
           +F    T S L  T    Y                   L S+ TGEGLEEL   I +++ 
Sbjct: 369 NFSSQDTSSSLKGTGFSPYIPTRQSKGALAPEGTPAPILTSALTGEGLEELRTAILRALQ 428

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
           +        ++ + ++     +         + N      +++  +L  A  +L  +TG 
Sbjct: 429 AEGALADSGALNNLRQQEAVATTLQALATAQAANINGLPHELMLLDLHAALRALDSLTGA 488

Query: 423 VDVEQLLDIIFSKFCIGK 440
              + +L  IFS FCIGK
Sbjct: 489 TTTDDILGRIFSTFCIGK 506


>gi|212697394|ref|ZP_03305522.1| hypothetical protein ANHYDRO_01964 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675586|gb|EEB35193.1| hypothetical protein ANHYDRO_01964 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 454

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 148/457 (32%), Positives = 248/457 (54%), Gaps = 30/457 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKAS---LRY-FFGLDGRI 60
           TI A+ST      ISI+R+SG   F + + I K   K+   R      +RY     DGRI
Sbjct: 5   TIAAISTPQGSGGISIVRMSGDKSFDIIKKIFKPINKRALDRDKDNRMMRYGHIEKDGRI 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
            D+ ++     P ++T ED  E + HG +  V  IL  L  +    LA+ GEF++RAF N
Sbjct: 65  YDEVMVNFMKGPNTYTREDICEINCHGSMISVRDILNLLLDL-GCELADRGEFTKRAFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR----SFIEADL 176
           G+IDL +AE++ D+I+S  E+ ++  ++ +SG    L  + I+++  I     S IE  +
Sbjct: 124 GRIDLSQAEAVLDIINSTNEISQKQGLKQLSG----LLREKIEEIRKIELEALSRIEYSI 179

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +F+E  D ++    +++  +    ++I+  +S    G+++++G +  I+G  N GKSSL 
Sbjct: 180 NFTE--DGEDLPLDDIVEYMDRANDEITKLLSTANKGKLVKDGIETTIIGKPNVGKSSLL 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  ++ AIVTDIPGTTRD +T  ++L    +KI+DTAGIRET D VEK G++R+    
Sbjct: 238 NVLLNENRAIVTDIPGTTRDSITEYINLGNLTLKINDTAGIRETHDEVEKIGVQRSKELA 297

Query: 297 ENADLILLL----KEINSKKEI--SFPKNIDFIFIGTKSDLYSTYT-EEYDH-----LIS 344
           + ADLI+ +    +EI+ + +I     K  + I I  K DL S  + E++D        S
Sbjct: 298 QGADLIIAIFDRSREIDEEDKIILDLLKGKNAIIILNKIDLDSKISKEDFDENFTIIETS 357

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLD 403
             + +G+++L   I  I  +K       + ++ RH   L+ +   L+ +  + K    +D
Sbjct: 358 MVSRDGIDKLEGAIFDIFDSKELNKESLMITNLRHERLLNSSKEKLQSSLKDIKSFVPID 417

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  +LR +   LG I G    ++++D +F +FC+GK
Sbjct: 418 CVEVDLRSSYDDLGLIIGETVSDEIMDKVFREFCVGK 454


>gi|291521111|emb|CBK79404.1| tRNA modification GTPase trmE [Coprococcus catus GD/7]
          Length = 458

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 148/471 (31%), Positives = 233/471 (49%), Gaps = 48/471 (10%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-------SLRYFFGL 56
           + +TI A+STG   + I  +RLSG     + + I +   P  RK        ++ Y +  
Sbjct: 2   QSDTIAAISTGMTNAGIGKVRLSGDDAVTIVDRIYRS--PGGRKRLSDVSTHTIHYGYIY 59

Query: 57  DGRIL-DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           DG  L D+ ++++   P S+T ED  E   HGG+ V+  +LE + K    RLA PGEF++
Sbjct: 60  DGDCLIDEVMVLIMRGPNSYTREDVVEIDCHGGVVVMKKLLETVLKY-GARLAEPGEFTK 118

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I+++++M    S+  + G +     +    +    +FIEA 
Sbjct: 119 RAFLNGRIDLSQAEAVIDVINAKSDMALESSLNQLRGSVKKSIEKLRKGIIGNIAFIEAA 178

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LD  E    + F   E+   +     ++   +     G +++ G K VILG  NAGKSSL
Sbjct: 179 LDDPEHIQAEGFGD-ELAVQVRGYMAELQKMLDSADNGRLVKEGIKTVILGKPNAGKSSL 237

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  ++ AIVT+I GTTRD L   + + G  + I DTAGIR+T+D+VEK G+++    
Sbjct: 238 MNVLLGENRAIVTEIAGTTRDTLEEHVSIHGIPLNIIDTAGIRQTEDVVEKIGVRKAIDF 297

Query: 296 VENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
            E ADLI+               +++ I SKK I      D   + ++SD+         
Sbjct: 298 AEEADLIIYVVDSSTEMDQNDDDIIRMIQSKKVIVLMNKSDLRPVVSRSDIEKQLQAPII 357

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK---------RHLYHLSQTVRYLE 391
             IS+    GL+        I  +  K + F+   H          RH   ++  +  L+
Sbjct: 358 E-ISAREETGLD--------IFEDTLKDMFFAGDIHYNDELCITNVRHKAAIAAALESLK 408

Query: 392 MASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           M   + +D G+  D  + +L  A   LG I G    + L+D IFS FC+GK
Sbjct: 409 MVMHSIED-GMPEDFFSIDLMDAYEQLGHIIGEAVEDDLVDTIFSDFCMGK 458


>gi|312879308|ref|ZP_07739108.1| tRNA modification GTPase TrmE [Aminomonas paucivorans DSM 12260]
 gi|310782599|gb|EFQ22997.1| tRNA modification GTPase TrmE [Aminomonas paucivorans DSM 12260]
          Length = 472

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 138/456 (30%), Positives = 221/456 (48%), Gaps = 26/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGRIL 61
           + I A++T      I+++RLSG  C  + +   + + P  R    R   G     +G IL
Sbjct: 22  DVIAALATPWGEGGIAVLRLSGDGCTALLDRAFRGRVPLSRTEPWRMRHGHVIDPEGEIL 81

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L + F +P+S+TGE+S E H HGG       L+ L  +   RLA PGEF+RRAF NG
Sbjct: 82  DEVLAVRFAAPKSYTGEESGELHCHGGALPAQACLDLLLSL-GARLAQPGEFTRRAFANG 140

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++  +I S +      +   + G     +   + + T + + +EA LDF EE
Sbjct: 141 RLDLSQAEAVLSVIRSRSREALTAAGRALQGRTGEAFRDLLGRATDLAAHLEALLDFPEE 200

Query: 182 EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E         +  L  +     D+      G L   +R G ++ ++G  N GKSSL NAL
Sbjct: 201 EIPPLEEGDLRAGLRSLKGRTEDLRQRCLGGML---LREGIRVGLVGRPNVGKSSLLNAL 257

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVT +PGTTRD++       G  +++ DTAGIR + D +E  GI+R    +E A
Sbjct: 258 LQEARAIVTPLPGTTRDLVEAVTTHRGVPLRLVDTAGIRSSADPLEALGIQRARRTLEEA 317

Query: 300 DLILLLKEINSK-----KEISFP-KNIDFIFIGTKSDLYSTYTEEYDHL---------IS 344
           DL + + +         +E++   +    +    K+DL    +E              +S
Sbjct: 318 DLRVWVVDAGEPLTEEDRELAASLRGKTLLVARNKTDLPEAVSEAALKALVPGCAVCSVS 377

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           +  G GLE L +++  +L      L  ++   +R +  L +T   L+ A+   +    D 
Sbjct: 378 ALEGVGLEALKDRMVEVLGGS-GTLEGALSITRRQMEALDRTGEALQTAASALEASEWDA 436

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  L  A  +L  +TG    E LLD +F +FCIGK
Sbjct: 437 AAACLGEARSALAGLTGQDPGEDLLDRVFGEFCIGK 472


>gi|223040362|ref|ZP_03610637.1| tRNA modification GTPase TrmE [Campylobacter rectus RM3267]
 gi|222878320|gb|EEF13426.1| tRNA modification GTPase TrmE [Campylobacter rectus RM3267]
          Length = 439

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 149/458 (32%), Positives = 238/458 (51%), Gaps = 44/458 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI AV+T     +ISIIRLSG     +   + K     PR A+L   +  +G ++D+ L
Sbjct: 3   DTIAAVATAHGVGSISIIRLSGADALSLALKLTKITSLVPRYATLTKIYA-EGELIDEAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           LI F +P SFTGED  EF +HGG+ V N IL EL K    RLA  GEFS+RA  NGK+D 
Sbjct: 62  LIYFKAPHSFTGEDVVEFQLHGGLVVANLILGELIK-NGARLARAGEFSKRALINGKMDF 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182
            + E++  LI++++E   ++    M G+L+    +   +L    +F+E  +D+++++   
Sbjct: 121 SKIEAINSLINAKSEDSVKIIARTMRGDLAKFANEIRSELVKTLAFVETSIDYADDDLPA 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+    S+ +  + + L   ++  ISQ + G  +  G+KI I+G  N GKSS+ N+L   
Sbjct: 181 DLLESISQMLKQNSVKLDKIVA--ISQSRKG--LLEGFKIAIVGKPNVGKSSILNSLLSF 236

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AI++D  GTTRD +   L +  +LV+I DTAGIR+    +E+ GI  +   +E AD+I
Sbjct: 237 DRAIISDEAGTTRDSIEEALKIGTHLVRIIDTAGIRKNAGKIEQIGISYSLRAIEEADVI 296

Query: 303 L------------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
           L                  LLK  NS+K+I +  N        K DL   +    +  I 
Sbjct: 297 LAVFDASQEADEQDSEILELLK--NSQKKIFYVLN--------KCDLGVKFASPGNP-IK 345

Query: 345 SFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGL 402
               +G  E+IN +K+ L + +  ++  +           S+ + R L + + +E    L
Sbjct: 346 ICAKQGTGEVINSLKTYLDAQETSEILLNSTRQISSCEAASEAIKRALNLLAESE----L 401

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ A  L  A   +  IT   +  ++LD +FS FC+GK
Sbjct: 402 ELFAYELNTAIEQISSITKPFERSEILDEMFSNFCLGK 439


>gi|323141443|ref|ZP_08076333.1| tRNA modification GTPase TrmE [Phascolarctobacterium sp. YIT 12067]
 gi|322414099|gb|EFY04928.1| tRNA modification GTPase TrmE [Phascolarctobacterium sp. YIT 12067]
          Length = 459

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 140/469 (29%), Positives = 239/469 (50%), Gaps = 45/469 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFPRKA-SLRYFFGLDG 58
           ++TI AV+T     A+ I+R+SGP    V E + K         +P    +  + +  DG
Sbjct: 3   EDTISAVTTALGEGAVGIVRISGPKALAVGETLFKAASGKALGAYPVNTLAYGHVYDTDG 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L +   +P S+T ED  E   HGG+  +  IL+ L      R A  GEF++RAF
Sbjct: 63  SLVDEVLAVYMRAPRSYTAEDVVEIQCHGGVQPLQKILQ-LTFAAGARPAEAGEFTKRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEG----MSGELSSLYGQWIDKLTHIRSFIEA 174
            NG+IDL +AE++ D+I S +E   +L+       ++GEL SL  Q +D + ++    EA
Sbjct: 122 LNGRIDLTQAEAVMDIIRSRSEASLKLAARQQQGQLAGELRSLRKQLVDIVVNL----EA 177

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +D+ EE D+++ +   V   +  + + I   ++    G+I+R G +  I+G  N GKSS
Sbjct: 178 VIDYPEE-DIEDVTYGRVQESLSTVCSGIEHLLAHAHTGKILREGLRTAIVGRPNVGKSS 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL +++ AIV+   GTTRDV+   L L+G  + ++DTAGIR TDD VEK G++++  
Sbjct: 237 LLNALLREERAIVSQYAGTTRDVIEEQLLLDGVPLVLADTAGIRATDDFVEKIGVEKSRQ 296

Query: 295 EVENADLIL---------------LLKEINSKKEI------SFPKNIDFIFIGTKSDLYS 333
            + +++L++               +L+    K  +        P+ +D       + L  
Sbjct: 297 LLADSELVICVIDGSDGLTDEDEAILEAAAGKPCVVIVNKSDLPQQVDL------AQLRE 350

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
            +  +    +S+ T  G+E     +KS +  +K      +   + R    L + +  L+ 
Sbjct: 351 RFGADKVMTLSAKTLVGIEAFTAWLKSYVYGSKGTLGDGAYIQNARQERLLREALAGLQD 410

Query: 393 ASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A    +D    D I  ++R A   LG+ITG    +++++ IF +FCIGK
Sbjct: 411 AEFAAQDYLPYDCIVIDVRSAIDLLGEITGDTVQDEIINEIFERFCIGK 459


>gi|157415218|ref|YP_001482474.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           81116]
 gi|172047131|sp|A8FM10|MNME_CAMJ8 RecName: Full=tRNA modification GTPase mnmE
 gi|157386182|gb|ABV52497.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           81116]
 gi|315931242|gb|EFV10213.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           327]
          Length = 442

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 151/477 (31%), Positives = 232/477 (48%), Gaps = 79/477 (16%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ +
Sbjct: 3   DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+  
Sbjct: 63  MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181
           L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D++++    
Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181

Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
              E +      + ++L +I  L        SQ K G I   G+KI I+G  N GKSSL 
Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D +E+ G+  +   +
Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDAIEQIGVALSKKSL 291

Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327
           E+AD+IL +        KE         N+ K+I +              +N +FI +  
Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSA 351

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           + D+ +   EE  + ++SF  EG+     +LIN  K                       +
Sbjct: 352 QKDI-TLLKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------I 387

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S    +     L E    L++ A  L LA   L + T     +++LD +F  FC+GK
Sbjct: 388 SSEAIFRAKGLLEE--SSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|300727852|ref|ZP_07061232.1| tRNA modification GTPase TrmE [Prevotella bryantii B14]
 gi|299774900|gb|EFI71512.1| tRNA modification GTPase TrmE [Prevotella bryantii B14]
          Length = 454

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 147/454 (32%), Positives = 241/454 (53%), Gaps = 22/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGRIL 61
           ++I A++T A   AI+IIR+SG     + + I + +K      +    +G     +G  +
Sbjct: 4   QSICALATKA-GGAIAIIRVSGDDSIAITDQIFQGRKSLTEVKANSVHYGNIIDKEGNTI 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  L+ VF +P S+TGE+S E + HG I +V  I++ L +    R A PGE+++RA+ NG
Sbjct: 63  DDVLISVFHAPHSYTGENSIEINCHGSIYIVKNIIQALIE-KGCRQAGPGEYTQRAYLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ADLI++  +   +L++  + G  SS      ++L  + S +E +LDFS+ 
Sbjct: 122 KMDLSQAEAVADLIAATNKATHKLALSQLKGHFSSELSTLREQLLKLTSLLELELDFSDH 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E+++     E+      +   I++     + G  ++NG  + I+G +N GKS+L N L  
Sbjct: 182 EELEFADRSELQALAEKIDKRITTLAHSFETGRALKNGIPVAIIGKTNVGKSTLLNQLLH 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIV+DI GTTRDV+   +D+ G   +  DTAGIR+T+D VE+ GIKR + ++E A +
Sbjct: 242 EEKAIVSDIDGTTRDVIEDTIDIHGVNFRFIDTAGIRQTEDKVEQIGIKRAYQKLEEATI 301

Query: 302 IL-LLKEINSKKEI----SFPKNIDFIFIGTKSDL--YSTYTEEYDH------LISSFTG 348
           +L +L    SK+E+    +  K    I +  K D+   S+Y   YD        IS+  G
Sbjct: 302 VLWILDNQPSKEEVLDIQNRTKEKQVIILSNKMDIKPQSSYN-FYDFRPFAELQISAKEG 360

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAE 407
            G+ EL  K+              I +  RH   L +    +E      K     D++AE
Sbjct: 361 IGITELEQKLYEASDIPEIDEDSIIVTSARHYEALIRAKESIERVIEGMKMSLSGDLLAE 420

Query: 408 NLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
           +LR+    L  ITG  +   ++L  IF  FC+GK
Sbjct: 421 DLRICLQELADITGGQITTHEVLGNIFKHFCVGK 454


>gi|256545944|ref|ZP_05473299.1| tRNA modification GTPase TrmE [Anaerococcus vaginalis ATCC 51170]
 gi|256398366|gb|EEU11988.1| tRNA modification GTPase TrmE [Anaerococcus vaginalis ATCC 51170]
          Length = 454

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 149/461 (32%), Positives = 251/461 (54%), Gaps = 38/461 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--------SLRY-FFGLD 57
           TI A+ST      ISI+R+SG   F + + I K   P   +A         +RY     D
Sbjct: 5   TIAAISTPQGSGGISIVRMSGDKSFDIIKKIFK---PINNRALDKEKDNRMMRYGHIEKD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           GRI D+ ++     P ++T ED  E + HG +  V  IL  L  M    LA+ GEF++RA
Sbjct: 62  GRIFDEVMVNFMKGPNTYTREDICEINCHGSMISVRDILNLLLDM-GCELADRGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR----SFIE 173
           F NG+IDL +AE++ D+I+S  E+ ++  ++ +SG    L  + I+++ +I     S IE
Sbjct: 121 FLNGRIDLSQAEAVLDIINSTNELSQKQGLKHLSG----LLREKIEEIRNIELEALSRIE 176

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
             ++F+E  D ++     +++ +    ++IS  ++    G+++++G +  I+G  N GKS
Sbjct: 177 YSINFTE--DGEDLPVDNIIDFMQKAYDEISKLLATANKGKLVKDGIETTIIGKPNVGKS 234

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N L  ++ AIVTDIPGTTRD +T  ++L    +KI+DTAGIRET D VEK G++R+ 
Sbjct: 235 SLLNVLLNENRAIVTDIPGTTRDSITEYINLGNLTLKINDTAGIRETHDEVEKIGVQRSK 294

Query: 294 LEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTE-EYDHLI--- 343
              E+ADLI+ + + + K +      +   K  + I I  K DL S  ++ ++D      
Sbjct: 295 ELAEDADLIIAIFDRSRKLDHEDKMILDMLKGKNAIIILNKIDLDSKISKIDFDDSFKII 354

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC- 400
             S  + +G+++L   I  I  +K       + ++ RH   L+ + + LE +SL++    
Sbjct: 355 ETSMVSRDGVDKLEGAIFDIFDSKELNKESLMITNLRHERLLNSSRKKLE-SSLDDIKAY 413

Query: 401 -GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D +  +LR +   LG I G    ++++D +F +FC+GK
Sbjct: 414 VPIDCVEVDLRSSYDDLGLIIGETVSDKIMDKVFREFCVGK 454


>gi|257470414|ref|ZP_05634505.1| tRNA modification GTPase TrmE [Fusobacterium ulcerans ATCC 49185]
 gi|317064622|ref|ZP_07929107.1| thiophene and furan oxidation protein THDF [Fusobacterium ulcerans
           ATCC 49185]
 gi|313690298|gb|EFS27133.1| thiophene and furan oxidation protein THDF [Fusobacterium ulcerans
           ATCC 49185]
          Length = 456

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 141/462 (30%), Positives = 246/462 (53%), Gaps = 36/462 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP--RKASLRYFFGLDGR-I 60
           +TI A+ST      I I+R+SG +  ++    F  K KK     +  S+ Y    DG+ +
Sbjct: 4   DTIAAISTPRGEGGIGIVRISGNNALEILGKIFKPKSKKNIEELKNFSINYGHLYDGKNL 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ +  +P ++T ED  E + HGG  +   +LE + K    R++  GEF+RRAF N
Sbjct: 64  VDEVLVSIMKAPNTYTKEDIVEINCHGGFVITEKVLETVLK-NGARISESGEFTRRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ D+I  +TE    LS++ + G+L    G     +  + + I   LD+ E
Sbjct: 123 GRLDLTQAEAVMDIIHGKTEKSVSLSLDQLRGDLKEQIGHLKKLVLDVAAHINVVLDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  + +   + ++ ++  + +     I     G++I+ G K  I+G  N GKSS+ N++ 
Sbjct: 183 E-GIDDPLPENLVGNLREVMDTTDILIRSYDKGKMIKEGIKTAIVGKPNVGKSSILNSVL 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIVT + GTTRDV+   ++L+G  + + DTAGIR+TDD+VE  G++++   +E+AD
Sbjct: 242 KEERAIVTHVAGTTRDVIEEVVNLKGIPLVLVDTAGIRKTDDLVENIGVEKSKQLIESAD 301

Query: 301 LILLL---------------KEINSKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHL-I 343
           LIL +               + I ++K I     ID      + D+  S  T+    L I
Sbjct: 302 LILFVVDGSRALDEEDMRIHEAIKAEKVIGILNKIDI-----REDIDLSPLTKINKWLEI 356

Query: 344 SSFTGEGLEELINK-----IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           S+   +G++E+  +     I+  + +  +K+  +   HK  L    Q++    +    E 
Sbjct: 357 SAIKNQGIDEMEEEIYNHIIEENVEDSSQKITITNIRHKSALEKTKQSIE--NIFETIEN 414

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++A +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 415 GLPMDLMAVDIKGALDSLSEVTGEISSEDLLDHIFSNFCVGK 456


>gi|226229337|ref|YP_002763443.1| putative tRNA modification GTPase TrmE [Gemmatimonas aurantiaca
           T-27]
 gi|226092528|dbj|BAH40973.1| putative tRNA modification GTPase TrmE [Gemmatimonas aurantiaca
           T-27]
          Length = 452

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 137/451 (30%), Positives = 231/451 (51%), Gaps = 21/451 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFF--GLDGRIL 61
           +TI A++T     A++++RLSG     +   +      +P  R A LR      +    L
Sbjct: 7   DTIVALATPPGRGAVALVRLSGARAVDIARALGAYDTGQPEARHA-LRAVLHDPVSREPL 65

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGG-IAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           D+ L+  F  P S+TGE + E   HGG IA +   ++        R A PGEF+RRA  N
Sbjct: 66  DEVLVTWFAPPRSYTGEMTVEITTHGGHIAPMR--VQAACIAAGARPALPGEFTRRAVLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DLL+AE++AD+I + T   ++ ++  + G LS       +++ H+ + I  D+DF E
Sbjct: 124 GRLDLLQAEAVADIIDARTSAMQQQALTQLDGGLSRRLLALREEVVHLEALIAYDIDFPE 183

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+D    ++  + +    L + + + +     G ++R+G  +V+ G  NAGKSSLFNAL 
Sbjct: 184 EDD-GPIAASRITDAGERLVSSLDALLRTAPAGTMVRDGALVVLAGPPNAGKSSLFNALL 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +  AIVT I GTTRD +   LD   + +++ DTAG+R+T D +E+ GI+ +   +  A 
Sbjct: 243 GQSRAIVTPIAGTTRDAIEALLDRTPWPLRLVDTAGLRDTTDPIEQLGIEVSRRYLAQAQ 302

Query: 301 LILLLKE-----INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEEL 354
           ++L   +     + + + ++       + + TK DL    T   + HL+S+ +GEGL  L
Sbjct: 303 VVLACGDDMESVVQTIEALAPHTAASVLAVHTKWDLIGPETTWVNIHLVSAESGEGLTSL 362

Query: 355 INKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDIIAENL 409
           +  I + L           ++ + +RH   L+   R    A L+    G     + A +L
Sbjct: 363 LQAIDTALGATAVVSASNDAVITRERHRAGLTN-ARDEVRAFLDAWTSGALPAPVAAVHL 421

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             A  +L  + G +D + +LD +F  FCIGK
Sbjct: 422 FTAREALSDLIGTIDTDDVLDRVFRDFCIGK 452


>gi|307747860|gb|ADN91130.1| tRNA modification GTPase mnmE [Campylobacter jejuni subsp. jejuni
           M1]
          Length = 442

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 150/477 (31%), Positives = 232/477 (48%), Gaps = 79/477 (16%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ +
Sbjct: 3   DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+  
Sbjct: 63  MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181
           L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D++++    
Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181

Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
              E +      + ++L +I  L        SQ K G  +  G+KI I+G  N GKSSL 
Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKG--LLEGFKIAIVGKPNVGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D +E+ G+  +   +
Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDAIEQIGVALSKKSL 291

Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327
           E+AD+IL +        KE         N+ K+I +              +N +FI +  
Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSA 351

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           + D+ +   EE  + ++SF  EG+     +LIN  K                       +
Sbjct: 352 QKDI-TLLKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------I 387

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S    +     L E    L++ A  L LA   L + T     +++LD +F  FC+GK
Sbjct: 388 SSEAIFRAKGLLEE--SSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|219847583|ref|YP_002462016.1| tRNA modification GTPase TrmE [Chloroflexus aggregans DSM 9485]
 gi|219541842|gb|ACL23580.1| tRNA modification GTPase TrmE [Chloroflexus aggregans DSM 9485]
          Length = 452

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 158/458 (34%), Positives = 229/458 (50%), Gaps = 31/458 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRY--FFGLDGRILD 62
           +TI A++T      I IIRLSGP    +   I +  +P   R   +RY    G DG ++D
Sbjct: 3   DTIAAIATPPGEGGIGIIRLSGPDAQSIAVKIFRPIRPGRLRSHRVRYGHVIGPDGNVID 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LL    +P SFT ED  E   HGG   V   LE        RLANPGEF+ RAF NG+
Sbjct: 63  EALLTFMAAPHSFTREDVIEISCHGGALPVQLTLEAALAA-GARLANPGEFTMRAFLNGR 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AE+  D+I ++T     ++   + G L+         L    ++I A +DF EE 
Sbjct: 122 IDLSQAEATLDVIRAQTSAGLAVAQAQLGGWLAREVRVARAALLEPLAYITALIDFPEE- 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                  + V   I      +   ++  + G ++RNG ++ ++G  N GKSSL NAL + 
Sbjct: 181 ---GIEPQAVAAPIAQALATVERLLASAEQGIVLRNGARVALVGRPNVGKSSLLNALLRV 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT IPGTTRD L    +L G  V + DTAG+R + D VE+ G++R    + +ADL 
Sbjct: 238 ERAIVTPIPGTTRDTLEETANLAGVPVVLIDTAGMRNSTDPVEQIGVERAAAALASADLA 297

Query: 303 LLL----KEINSKKEISFPKNID--FIFIGTKSD---LYSTYTEEYDHLI-----SSFTG 348
           LL+    + +  + E       D   I +  K D   +      E+ H +     S+  G
Sbjct: 298 LLVFDAQQPLTDEDEAMLTTTADKPTIIVWNKCDDPAILPPTAPEHPHRVAVAACSARYG 357

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSH----KRHLYHLSQTVRYLEMA--SLNEKDCGL 402
            G++EL   I + L      LP    +H     RH   L +   YL  A  +LN  +   
Sbjct: 358 HGIDELAKTIATTLLG--GTLPAVGATHLVSNPRHRAALRRAAEYLRAAQETLN-TNAAT 414

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++A +L  A+ +LG+ITG    E LLD+IFS+FCIGK
Sbjct: 415 DLLAADLTGATNALGEITGETVGEDLLDVIFSRFCIGK 452


>gi|225873776|ref|YP_002755235.1| tRNA modification GTPase TrmE [Acidobacterium capsulatum ATCC
           51196]
 gi|225794461|gb|ACO34551.1| tRNA modification GTPase TrmE [Acidobacterium capsulatum ATCC
           51196]
          Length = 486

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 147/488 (30%), Positives = 239/488 (48%), Gaps = 53/488 (10%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-------- 53
           N   ETI A+ST      I I+RLSGP    + E + + + P  + AS R+         
Sbjct: 3   NLAHETIVAISTPPGRGGIGIVRLSGPRAVPMAEALVRLRHPL-QHASARFAEIYEPSAP 61

Query: 54  --FGLDG-----RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLR 106
                +G     R LD+ ++  F +P S+TGED  E   HG   V+  +L   A     R
Sbjct: 62  GEPAAEGTSEAPRKLDEAVVTCFQAPRSYTGEDLVEIAAHGSPVVLQ-MLVRAALAQGAR 120

Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166
           LA PGEF+ RAF +G++DL +AE++ DLI ++T  Q R++ E M G LS        +L 
Sbjct: 121 LARPGEFTERAFLSGRLDLTQAEAVRDLIDAQTLYQARVAAEQMGGALSRRVQPAKQQLV 180

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            + + +EA +DF+E+ DV    + ++L  I  ++  + S       G ++ +G  + I+G
Sbjct: 181 ELIALLEAGIDFAED-DVDVTPNAQILTRIDAMQPILESLHRSFARGRLVHSGLTLAIVG 239

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N GKSSLFN L +++ AIVT +PGTTRD+++  + L G  +++ DTAG+RE  D  E 
Sbjct: 240 RPNVGKSSLFNRLVERERAIVTAMPGTTRDLVSERVSLGGIPLELVDTAGLREGADEAET 299

Query: 287 EGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYS------- 333
            GI+++   + +A L++L+ E N   S++E +   ++     + +  KSDL         
Sbjct: 300 IGIQKSREALADAHLVMLVVEGNTPLSEEEQALAASLAGRRALLVRNKSDLVQQKSLLDT 359

Query: 334 -------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                              T T       S+ TGEG+  L   +  ++  +       + 
Sbjct: 360 QPEALFASPPEASSEKESETVTNIRAVSTSALTGEGIAGLRETLLQMMQAEGMGSESGML 419

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDII 432
           +  RH   +S  +  L  A    +  G+  +++  +L  A   L  +TG    + +L+ I
Sbjct: 420 TSLRHHEAVSAALAALGKARAAAQ-AGIPHEMVLLDLYEALRQLDSLTGETTADDILNRI 478

Query: 433 FSKFCIGK 440
           FS FCIGK
Sbjct: 479 FSTFCIGK 486


>gi|227500993|ref|ZP_03931042.1| tRNA modification GTP-binding protein TrmE [Anaerococcus tetradius
           ATCC 35098]
 gi|227216766|gb|EEI82164.1| tRNA modification GTP-binding protein TrmE [Anaerococcus tetradius
           ATCC 35098]
          Length = 470

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 145/461 (31%), Positives = 246/461 (53%), Gaps = 25/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRK---ASLRYFFG 55
           +N E+ TI A+ST +    ISI+R+SGP  +++   I +    KP  +      +RY   
Sbjct: 14  VNMEERTIAAISTPSGTGGISIVRMSGPKAYEIVSQIFRPIMGKPLDKNDDNRKMRYGNI 73

Query: 56  LD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           +D  G I+D+ ++    +P ++T ED  E + HG    V  IL  L       LA  GEF
Sbjct: 74  IDNQGEIIDEVMVCFMKAPFTYTREDICEINCHGSFVSVKKILNLLLDR-GCDLAEAGEF 132

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG+IDL +AE++ D+I++  ++ ++  +  ++G L         +L    S +E
Sbjct: 133 TKRAFLNGRIDLSQAEAVLDIINARNDLSQKEGINQLNGALREKINSIRQELLEALSRLE 192

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
             ++F+E  D ++    E++  +   K+ I   ++    G+I+R+G    I+G  N GKS
Sbjct: 193 YSINFTE--DGEDLPKDEIIVYMDKAKDMIDKLLNTSNKGKIVRDGINTTIIGKPNVGKS 250

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N L  ++ AIVTDIPGTTRD++T  +    + +KI+DTAGIRETDD+VEK G+ ++ 
Sbjct: 251 SLLNNLLNENRAIVTDIPGTTRDLITEYISFGDFTLKINDTAGIRETDDVVEKIGVDKSI 310

Query: 294 LEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342
             ++ +DLI+ + + +       KK +   +  + I I  K+DL   + E+         
Sbjct: 311 ELIDQSDLIIAIFDSSRDFDQEDKKIMDLIEGKNAIIILNKTDLSGKFDEKILKTSLPII 370

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
             S    EG+++L   I  + + K  K    + ++ RH   L+   + L  +SL + + G
Sbjct: 371 RTSMINEEGIDKLEETITEMFNTKELKRESVLITNTRHERLLNMASKKL-TSSLYDINRG 429

Query: 402 LDIIA--ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + I A   +LR A   LG I G    ++++D +F +FC+GK
Sbjct: 430 IPIDACEVDLRGAYDDLGLIIGESVSDEIMDKVFKEFCVGK 470


>gi|228473018|ref|ZP_04057775.1| tRNA modification GTPase TrmE [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275600|gb|EEK14377.1| tRNA modification GTPase TrmE [Capnocytophaga gingivalis ATCC
           33624]
          Length = 475

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 151/473 (31%), Positives = 245/473 (51%), Gaps = 46/473 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL---DGRI 60
           +TI A++T     AIS+IRLSG    ++ + + K    KP     S     G    + ++
Sbjct: 11  DTIVALATATGVGAISVIRLSGKEAIELADKVFKTLSGKPLSEAPSHTVHLGTIKSETQV 70

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L  +F   +S+TGE   EF  HG   +   +++ L      RLA  GEF++RAF N
Sbjct: 71  IDECLATIFKGKKSYTGEPVVEFSCHGSAYITQEVIK-LCLANGARLAQAGEFTKRAFLN 129

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+ L +AE++ADLI+S+++   +++++ M G  +S       +L +  S IE +LDFSE
Sbjct: 130 GKLALNQAEAVADLIASDSKASHQVALQQMRGGFTSEIEGLRQELLNFASLIELELDFSE 189

Query: 181 EEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E DV  F+ ++ L  +L  +K  +   +     G  I+NG  + I+G  NAGKS+L N L
Sbjct: 190 E-DVA-FADRKQLEQLLKRIKTTLQELVQSFSAGNAIKNGIPVAIVGKPNAGKSTLLNTL 247

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DI GTTRD +   L + G   +  DTAGIR+T D +E  G+++   +++ A
Sbjct: 248 LNEERAIVSDIAGTTRDTIEETLHIAGVTFRFIDTAGIRDTRDQIEAIGVEKAKEKIKKA 307

Query: 300 DLILLL--KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT---- 347
            ++L L  ++ N+  E+      ++ K +  + +  K+D       ++D  I        
Sbjct: 308 QIVLYLYNEKENTTDEVVQFVGENYRKGLKILLLHNKTDNEYIGLSDFDEEIEKKLNPEE 367

Query: 348 ---GEG-----LEELIN--KIKSILSNKFKKLP----FSIPSHKRHLYHLSQTVRYLEMA 393
              G G      +E IN   +K +LS   K+L      +I ++ RH   L   +  LE  
Sbjct: 368 RKYGYGKLRISAKEKINIEALKKLLSFYAKELTSTESATIITNIRHYEALKNALEALEKV 427

Query: 394 SLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                + GL      D++A ++R     LG ITG V  ++LL  IFS+FCIGK
Sbjct: 428 -----EEGLINHLSGDLLAIDIREVLYHLGSITGAVSNDELLGNIFSRFCIGK 475


>gi|292669286|ref|ZP_06602712.1| tRNA modification GTPase TrmE [Selenomonas noxia ATCC 43541]
 gi|292649127|gb|EFF67099.1| tRNA modification GTPase TrmE [Selenomonas noxia ATCC 43541]
          Length = 458

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 139/458 (30%), Positives = 234/458 (51%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP------FPRKASLRYFFGLDG 58
           ++TI   +T      I IIR+SG     +   + +           P  A   +    DG
Sbjct: 3   EDTISQTATAPGAGGIGIIRMSGVQALPIARRVFRPAAGGVLGDMAPYTARYGHITAADG 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ +L+   +P S+TGED+ E   HGG  V+  +L    +    R A  GEF++RAF
Sbjct: 63  SVIDECILLYMRAPHSYTGEDTVELQCHGGRVVLRAVLLRTWEA-GARPAEAGEFTKRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL  AE + +LI++++      +   + G  S+       +L    + IEA +DF
Sbjct: 122 LNGRLDLARAEGVMELITAKSARAAHAARARIEGAFSAEITAVRQRLLGAIARIEAGIDF 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E+ D+    +  +  D+      +   ++    G ++R G K VI+G  N GKSSL NA
Sbjct: 182 PED-DLPEVHTAALSADVEEASAAVRRLLAGADAGRVLREGVKTVIVGRPNVGKSSLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L   + AIVTD+PGTTRDV+  ++ +EG  +++ DTAG+R  +D VE+ G++RT   + +
Sbjct: 241 LLGMERAIVTDVPGTTRDVIEEEIIVEGIPLRLLDTAGLRAAEDAVEQIGVRRTEEHLAD 300

Query: 299 ADLILLLKEINS------KKEISFPKNI--DFIFIGTKSDLYSTYTEEYDHL------IS 344
           A+LIL + + ++      +  ++  +N   D + +  K D  +  T     L      IS
Sbjct: 301 AELILAVFDASAALTDEDRDLLARLQNTAADILVLCNKEDRSAVLTAADFALDAPVLTIS 360

Query: 345 SFTGEGLEELINKIKSILSNKFKKLP-FSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
           +  G GL+ L   I + ++ +  +L   ++P+ +R +  L +   +L E A+    D G 
Sbjct: 361 AREGTGLDALRAAIAARVATREGELSDGALPNKEREVDALRRAAGHLDEAAAALAADMGT 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D ++ +LR A   LG+I G      L+D IFS+FCIGK
Sbjct: 421 DFVSIDLRAAYDILGEILGETADTDLIDRIFSEFCIGK 458


>gi|332702562|ref|ZP_08422650.1| tRNA modification GTPase mnmE [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332552711|gb|EGJ49755.1| tRNA modification GTPase mnmE [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 521

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 176/316 (55%), Gaps = 13/316 (4%)

Query: 1   MNHE------KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----PRKAS 49
           M+H+      ++TI A++T      + I+RLSGP   ++   + +   P      PR   
Sbjct: 1   MHHDTDTQDIQDTIAAIATPPGQGGVGIVRLSGPDAKRIGLAMFRATSPAFRDFTPRMLH 60

Query: 50  LRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109
                   G  +D+ L ++ P P S+TGED  E H HG  AV+  +L+    +   RLA 
Sbjct: 61  HGAILDAQGSPIDEALAVLMPGPRSYTGEDVLELHCHGSSAVLREVLDATLAL-GARLAE 119

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
            GEF+RRAF NG++DL +AE++A+LI++       L+   ++G L         +L H+R
Sbjct: 120 RGEFTRRAFLNGRLDLSQAEAVAELIAAPDRAAAHLARTRLAGLLGERVRALRTRLEHLR 179

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           + +   +DF E+E V   + ++ L+ +  +  ++   ++  +     R G  +V+ G  N
Sbjct: 180 AALCVAVDFPEDE-VDCLAPEDFLSGVRAVMAEVRGLLTSHERTRAFREGAVVVLAGPVN 238

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
           AGKSSL NAL  ++ AIV+D PGTTRD L   + L+G  V++ DTAG+RET D VE EG+
Sbjct: 239 AGKSSLLNALLGRERAIVSDTPGTTRDWLEESISLDGLPVRLVDTAGLRETADAVELEGV 298

Query: 290 KRTFLEVENADLILLL 305
           +R+   +E ADL+LL+
Sbjct: 299 RRSRELLERADLVLLV 314


>gi|303247604|ref|ZP_07333875.1| tRNA modification GTPase TrmE [Desulfovibrio fructosovorans JJ]
 gi|302491084|gb|EFL50978.1| tRNA modification GTPase TrmE [Desulfovibrio fructosovorans JJ]
          Length = 465

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 145/463 (31%), Positives = 225/463 (48%), Gaps = 34/463 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FPRKASLRYFFG----LDGRI 60
           +TI AV+T      + I+RLSGP    V   +    +P F      R   G      GR+
Sbjct: 9   DTIAAVATPPGRGGVGIVRLSGPLAKAVATKLFTSARPDFAGLRPYRLHHGTVRDASGRV 68

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ +    P P S+TGED+AE   HG   V+  +L         R A PGEF++RA+ N
Sbjct: 69  LDEVMAAFMPGPGSYTGEDTAEIFCHGAPVVLAAVLAAACAA-GARPAGPGEFTKRAYLN 127

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++A+LI++   +   L++  +SG +     +    L  +R+ +   +DF +
Sbjct: 128 GRLDLSQAEAVAELIAARGAVDASLALTRLSGGMGEAARELGRALGELRAGVCLAVDFPD 187

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE V+    +   + +  + + I + ++ G+     R G  + + G  NAGKSSLFNA  
Sbjct: 188 EE-VECQPKEAFADGVAAVMDRIDALLAAGRRARPFREGAVVALFGKVNAGKSSLFNAFL 246

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D A+V D PGTTRD L   LDL+G  V+++DTAG+RET D VE  G KR       AD
Sbjct: 247 GTDRALVADQPGTTRDYLEEGLDLDGVPVRLTDTAGLRETPDAVEAAGKKRGRDVAGRAD 306

Query: 301 LILLL----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------- 342
           L L +           E  +  E   P+ +  + +  K+DL +        L        
Sbjct: 307 LGLYVVDGAAPYAPDPEAEALLEELGPRRV--LVVVNKADLPAAEPGAAKKLKARGLETV 364

Query: 343 -ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKD 399
            +S+ TG GL  L+  ++  L +      P +   + R    L      LE+A L  +  
Sbjct: 365 AVSARTGFGLTGLLTAMRERLTATDGPPEPAATAPNAREAASLEAA--RLELAGLVADIR 422

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G+  D++   L  A+  +  ITG    + +L+ +FSKFCIGK
Sbjct: 423 AGVPYDLLGARLETAAALVADITGETTPDDVLNAVFSKFCIGK 465


>gi|331239929|ref|XP_003332616.1| tRNA modification GTPase GTPBP3 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309311606|gb|EFP88197.1| tRNA modification GTPase GTPBP3 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 534

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 113/316 (35%), Positives = 178/316 (56%), Gaps = 18/316 (5%)

Query: 6   ETIFAVSTG-ALPSAISIIRLSGPSCFQVCEFICKK----------KKPFPRKASLRYFF 54
           +TI+  +T   L +A++IIR+ GP   Q+C  I +             P PRKA+LR   
Sbjct: 26  DTIYGPATPVGLKAALAIIRIDGPQAIQLCRSITRPLNPSIPHSHLPPPAPRKATLRKLV 85

Query: 55  -GLDGRILD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
             +  +++D + LL+ F  P+      + EFH+HG  AV   +L  L+++  LRLA PGE
Sbjct: 86  CPITQKVIDPEALLLRFDHPKH--AASTIEFHLHGSPAVSKSLLSTLSQLDYLRLAQPGE 143

Query: 113 FSRRAFE--NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           F+RR F+  +G +D+ +   L  LI +ETE QRR ++     +    Y Q   KL    +
Sbjct: 144 FTRRRFDRAHGSMDINKVLGLKHLIEAETEEQRRWAVSEFDSKFDHTYQQMRKKLKQSMA 203

Query: 171 FIEADLDFSEEEDVQNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
             EA +DFSE+  + +     +V++ +L L++ I++ +SQ K  E I  G K+ + G  N
Sbjct: 204 LCEAIIDFSEDGSMDDREIWNQVIDHLLDLQSTINAQLSQSKRREKISMGIKVSLYGSPN 263

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKS+L N L  ++ AIV+  PGTTRD++ + +D  G+ + +SDTAG+R + D VE+ GI
Sbjct: 264 VGKSTLLNYLVNREAAIVSPYPGTTRDIIELSIDYHGFPIILSDTAGLRSSTDPVEEIGI 323

Query: 290 KRTFLEVENADLILLL 305
            R    +  AD+ LLL
Sbjct: 324 NRAKENIGKADVRLLL 339


>gi|329565809|gb|AEB92241.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
          Length = 404

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 209/379 (55%), Gaps = 23/379 (6%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++RAF 
Sbjct: 30  VYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFL 88

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+++T +  + + + +SG +     +  DK+  + + + A +DF 
Sbjct: 89  NGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLAHLLALIDFP 148

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+ DV+    KE+L     +  DI   I   + G +IR G K  I+G  N GKSSL NAL
Sbjct: 149 ED-DVEELERKEMLKTAKEIVKDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNAL 207

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   +  A
Sbjct: 208 LKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEA 267

Query: 300 DLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-------- 342
           DLIL        L KE     +I   KNI  +F+  K DL     E E  +L        
Sbjct: 268 DLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIIIE 325

Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDC 400
           +S+    GL+EL + I + +           I ++ RH   L    +Y+E +    E++ 
Sbjct: 326 VSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIEREY 385

Query: 401 GLDIIAENLRLASVSLGKI 419
             D+I  +L  A   +GKI
Sbjct: 386 SEDLITIDLNAALEQIGKI 404


>gi|325846391|ref|ZP_08169360.1| tRNA modification GTPase TrmE [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481575|gb|EGC84615.1| tRNA modification GTPase TrmE [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 454

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 248/460 (53%), Gaps = 36/460 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--------SLRY-FFGLD 57
           TI A+ST      ISI+R+SG   F + + I K   P   +A         +RY     D
Sbjct: 5   TIAAISTPQGSGGISIVRMSGDKSFDIIKKIFK---PINERALDRDKDNRMMRYGHIEKD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           GRI D+ ++     P ++T ED  E + HG +  V  IL  L  +    LA+ GEF++RA
Sbjct: 62  GRIYDEVMINFMKGPNTYTREDICEINCHGSMISVRDILNLLLDL-GCELADRGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR----SFIE 173
           F NG+IDL +AE++ D+I+S  E+ ++  ++ +SG    L  + I+++  I     S IE
Sbjct: 121 FLNGRIDLSQAEAVLDIINSTNEISQKQGLKQLSG----LLREKIEEIRKIELEALSRIE 176

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
             ++F+E  D ++    +++  +    ++I+  +S    G+++++G +  I+G  N GKS
Sbjct: 177 YSINFTE--DGEDLPLDDIVEYMDRANDEITKLLSTANKGKLVKDGIETTIIGKPNVGKS 234

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N L  ++ AIVTDIPGTTRD +T  ++L    +KI+DTAGIRET D VEK G++R+ 
Sbjct: 235 SLLNVLLNENRAIVTDIPGTTRDSITEYINLGNLTLKINDTAGIRETHDEVEKIGVQRSK 294

Query: 294 LEVENADLILLL----KEINSKKEI--SFPKNIDFIFIGTKSDLYSTYTEE---YDHLI- 343
              + ADLI+ +    +EI+ + +I     K  + I I  K DL S  ++E    D  I 
Sbjct: 295 ELAKGADLIIAIFDRSREIDEEDKIILDLLKGKNAIIILNKIDLDSKISKEDFDKDFTII 354

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400
             S  + +G+++L   I  I  +K       + ++ RH   L+ +   L+ +  + K   
Sbjct: 355 ETSMVSRDGIDKLEGAIFDIFDSKELNKESLMITNLRHERLLNSSKEKLQSSLKDIKSFV 414

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D +  +LR +   LG I G    ++++D +F +FC+GK
Sbjct: 415 PIDCVEVDLRSSYDDLGLIIGETVSDEIMDKVFREFCVGK 454


>gi|310779689|ref|YP_003968022.1| tRNA modification GTPase trmE [Ilyobacter polytropus DSM 2926]
 gi|309749012|gb|ADO83674.1| tRNA modification GTPase trmE [Ilyobacter polytropus DSM 2926]
          Length = 455

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 143/460 (31%), Positives = 239/460 (51%), Gaps = 32/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP--RKASLRYFFGLDGRIL 61
           +TI A+ST      I I+R+SG    ++    F  K +K     +  ++ Y    DG +L
Sbjct: 3   DTIAAISTPRGEGGIGIVRMSGDDSIKILSKVFRAKSEKKVEDLKSHTINYGHIYDGEVL 62

Query: 62  -DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
            D+ ++     P+++T ED  E + HGG  +   ILE L K    R+A  GEF+RRAF N
Sbjct: 63  LDEVMVSFLKGPKTYTREDIVEINCHGGYLITEKILELLLK-KGARIAEQGEFTRRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ D+I  +T+    LS+  + G+L +  G     +  + + +   LD+ E
Sbjct: 122 GRLDLTQAEAVMDIIHGKTDKSISLSLNQLRGDLKNQIGILKKMILDVAAHVNVVLDYPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  + +     +++++L +       I+    G++I+ G K  I+G  N GKSSL N + 
Sbjct: 182 E-GIDDPLPDNLMDNLLEVLKSSDVLIASYDKGKMIKEGVKTAIVGKPNVGKSSLLNTIL 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIVT I GTTRD++   ++L+G  + + DTAGIR TDD++E  G+K++   ++ AD
Sbjct: 241 KEERAIVTHIAGTTRDIIEEVINLKGIPLILVDTAGIRTTDDVIENIGVKKSEDLIDKAD 300

Query: 301 LILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISS 345
           L+L +                ++N+ K I     ID      K DL           IS+
Sbjct: 301 LVLFVVDGSRELEEEDIKVHDQLNADKVIGILNKIDM---ERKLDLTPLNKVGKWIEISA 357

Query: 346 FTGEGLEELINKI-KSILSNKF----KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
               G+  + ++I K I+S +     +KL  +   HK  L    Q V  + + ++N    
Sbjct: 358 TENLGISNMEDEIYKYIISGQVEDSSQKLIITNVRHKSALEKTKQAVENI-LETIN-MGL 415

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++A +L+ A  SL ++TG +  E LLD +FS FC+GK
Sbjct: 416 PMDLMAVDLKEALDSLSEVTGEISTEDLLDHVFSNFCVGK 455


>gi|283956362|ref|ZP_06373842.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792082|gb|EFC30871.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 442

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 148/470 (31%), Positives = 229/470 (48%), Gaps = 65/470 (13%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ +
Sbjct: 3   DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+  
Sbjct: 63  MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182
           L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D+++++   
Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+    S     +   LK   +  +SQ + G I   G+KI I+G  N GKSSL NAL   
Sbjct: 182 DLLEQISTMCEENSKILKEVYT--LSQSRKGLI--EGFKIAIVGKPNVGKSSLLNALLSY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D +E+ G+  +   +E+AD+I
Sbjct: 238 ERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDAIEQIGVALSKKSLEDADII 297

Query: 303 LLLKEINSKKEISFPKNIDFI--------FIGTKSDLYSTY------------------- 335
           L + + +  ++    K  D +        +I  KSDL + +                   
Sbjct: 298 LAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNIQNKNFIKLSAQKDITL 357

Query: 336 -TEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
             EE  + ++SF  EG+     +LIN  K                       +S    + 
Sbjct: 358 LKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------ISSEAIFR 394

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               L E    L++ A  L LA   L + T     +++LD +F  FC+GK
Sbjct: 395 AKGLLEE--SSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|329565807|gb|AEB92240.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
 gi|329565811|gb|AEB92242.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
          Length = 404

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 209/379 (55%), Gaps = 23/379 (6%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++RAF 
Sbjct: 30  VYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFL 88

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+++T +  + + + +SG +     +  DK+  + + + A +DF 
Sbjct: 89  NGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLAHLLALIDFP 148

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+ DV+    KE+L     +  DI   I   + G +IR G K  I+G  N GKSSL NAL
Sbjct: 149 ED-DVEELERKEMLETAKEIVKDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNAL 207

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   +  A
Sbjct: 208 LKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEA 267

Query: 300 DLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-------- 342
           DLIL        L KE     +I   KNI  +F+  K DL     E E  +L        
Sbjct: 268 DLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIIIE 325

Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDC 400
           +S+    GL+EL + I + +           I ++ RH   L    +Y+E +    E++ 
Sbjct: 326 VSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIEREY 385

Query: 401 GLDIIAENLRLASVSLGKI 419
             D+I  +L  A   +GKI
Sbjct: 386 SEDLITIDLNAALEQIGKI 404


>gi|329565797|gb|AEB92235.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
          Length = 404

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 209/379 (55%), Gaps = 23/379 (6%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++RAF 
Sbjct: 30  VYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFL 88

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+++T +  + + + +SG +     +  DK+  + + + A +DF 
Sbjct: 89  NGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLAHLLALIDFP 148

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+ DV+    KE+L     +  DI   I   + G +IR G K  I+G  N GKSSL NAL
Sbjct: 149 ED-DVEELERKEMLKTAKEIVEDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNAL 207

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   +  A
Sbjct: 208 LKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEA 267

Query: 300 DLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-------- 342
           DLIL        L KE     +I   KNI  +F+  K DL     E E  +L        
Sbjct: 268 DLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIIIE 325

Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDC 400
           +S+    GL+EL + I + +           I ++ RH   L    +Y+E +    E++ 
Sbjct: 326 VSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIEREY 385

Query: 401 GLDIIAENLRLASVSLGKI 419
             D+I  +L  A   +GKI
Sbjct: 386 SEDLITIDLNAALEQIGKI 404


>gi|298528962|ref|ZP_07016365.1| tRNA modification GTPase TrmE [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510398|gb|EFI34301.1| tRNA modification GTPase TrmE [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 466

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 140/458 (30%), Positives = 226/458 (49%), Gaps = 29/458 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRILD 62
           TI A++T      + I+RLSGP    + E +      F    + +  +G     + +ILD
Sbjct: 14  TIAAIATPMGQGGVGIVRLSGPQSLDIAEKLFVPGPRFKGFKAYKLHYGWIKNRNQQILD 73

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LL   P+P S+T ED  E + HGG AV+ G+LE L  +     A PGEF++RAF N +
Sbjct: 74  EVLLAYMPAPYSYTREDVVEINCHGGPAVLEGVLEALYHL-GAEPAAPGEFTKRAFLNNR 132

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE+  ++I++ T+    L+ + + G L        D L  ++  +   +DF EE 
Sbjct: 133 MDLTQAEAALEMINAPTQDGALLARDKLQGHLKERVDSLRDSLEKLKQELCLAVDFPEE- 191

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D++     ++         +I   +   +   + R G  +V+ G  NAGKSSL NAL  +
Sbjct: 192 DLECLPLADLAQRTNSAVREIDQLLKAFEQNRVFREGALVVLAGRVNAGKSSLMNALLGR 251

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT IPGTTRD L   ++L+G  V++ DTAG R T D +E  G++     +  +DL 
Sbjct: 252 ERAIVTSIPGTTRDYLEEAINLDGLPVRLVDTAGRRPTRDKIEMMGLETGRQLISRSDLC 311

Query: 303 LLLKEINSKKEISFPKNID---------FIFIGTKSDLYSTYTEEYDHL---------IS 344
           +L+  +++ +E + P+++D          +    K DL S        L          S
Sbjct: 312 ILV--LDAGQEPA-PEDLDILEEISPGKLVLAVNKQDLVSGTPGWVQDLKDKGLDLVHTS 368

Query: 345 SFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVR-YLEMASLNEKDCGL 402
           +  G GLE L   I+S IL  K  +   S+  + R    L +  +  L +A    ++   
Sbjct: 369 ATLGHGLENLTRAIRSRILGEKRPQATSSLAPNLRQKTALDKARQELLLLADEARQEMPY 428

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++   L  A   L +ITG +  + +L+ IF  FCIGK
Sbjct: 429 DVLGVRLDYACTFLDEITGRIVTDDILNSIFENFCIGK 466


>gi|269122893|ref|YP_003305470.1| tRNA modification GTPase TrmE [Streptobacillus moniliformis DSM
           12112]
 gi|268314219|gb|ACZ00593.1| tRNA modification GTPase TrmE [Streptobacillus moniliformis DSM
           12112]
          Length = 455

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 153/462 (33%), Positives = 244/462 (52%), Gaps = 37/462 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGLD-GRILD 62
           +TI A+ST    S I I+R+SG   F +    FI   K        L Y +  D G+ +D
Sbjct: 4   DTIAAISTARGESGIGIVRISGDRAFDILNEIFIPYTKNKDLGNYKLNYGYIYDEGKAVD 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+     P S+T ED  E + HGG      ILE + K    R+A  GEF++RAF NG+
Sbjct: 64  EVLVSRMKGPRSYTTEDIVEINCHGGYYTTKKILEVVLK-KGARMAEIGEFTKRAFMNGR 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE- 181
           IDL +AE++ D+I  +TE    LS++ + G L     ++ +    I + +   +D+ EE 
Sbjct: 123 IDLSQAEAVIDIIHGKTEKSVSLSLDQLKGSLRDQIKEFKEAFLDITAHVNVVMDYPEEG 182

Query: 182 -EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +D      ++ L ++ + K D  + IS    G+ I+ G K VI+G  N GKS+L N L 
Sbjct: 183 IDDPLPLELRKKLEEV-YKKAD--TLISSYDKGKKIKEGIKTVIVGKPNVGKSTLLNTLL 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVT +PGTTRDV+   ++++G  + + DTAGIRETDDIVE  G+K++   +E AD
Sbjct: 240 QEERAIVTSVPGTTRDVIEEIINIKGIPLVLVDTAGIRETDDIVENIGVKKSLEFIEMAD 299

Query: 301 LILLLKEINSKKEIS----------FPKNIDFIFIGTKSDL-----YSTYTEEYDHLISS 345
           L+LL+  ++S KEI                 +I +  K DL      S Y       IS+
Sbjct: 300 LVLLV--LDSSKEIEEEDIRVIEKILELEKQYIVLLNKIDLERKLDISKYNLNNIVEISA 357

Query: 346 FTGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
                ++++ N+I   +++       ++L  +   HK  L    ++++ +     +  D 
Sbjct: 358 QNNINMDKMENEIYEFITDNEIDDSSERLILTNIRHKTALEKTKESIKNI----FDTIDM 413

Query: 401 G--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G  LD+I+ +L+    SL +ITG +  E +LD IF+KFC+GK
Sbjct: 414 GMPLDLISVDLKEGLDSLSEITGEITSEDVLDHIFAKFCVGK 455


>gi|329565801|gb|AEB92237.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
          Length = 404

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 208/379 (54%), Gaps = 23/379 (6%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++RAF 
Sbjct: 30  VYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFL 88

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+++T +  + + + +SG +     +  DK+  + + + A +DF 
Sbjct: 89  NGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLAHLLALIDFP 148

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+ DV+    KE+L     +  DI   I   + G +IR G K  I+G  N GKSSL NAL
Sbjct: 149 ED-DVEELERKEMLETAKEIVKDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNAL 207

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   +  A
Sbjct: 208 LKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEA 267

Query: 300 DLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-------- 342
           DLIL        L KE     +I   KNI  +F+  K DL     E E  +L        
Sbjct: 268 DLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIIIE 325

Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDC 400
           +S     GL+EL + I + +           I ++ RH   L    +Y+E +    E++ 
Sbjct: 326 VSPVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIEREY 385

Query: 401 GLDIIAENLRLASVSLGKI 419
             D+I  +L  A   +GKI
Sbjct: 386 SEDLITIDLNAALEQIGKI 404


>gi|269791929|ref|YP_003316833.1| tRNA modification GTPase TrmE [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269099564|gb|ACZ18551.1| tRNA modification GTPase TrmE [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 450

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 142/463 (30%), Positives = 232/463 (50%), Gaps = 39/463 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLD--G 58
            +++ I A+ST      I++IRLSG    QV + + + + P       ++R+   +D  G
Sbjct: 2   RDEQVIAAISTPFGQGGIAVIRLSGRGSAQVVDRVFRGRSPLSSSPPWTMRHGHLVDPRG 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L + F +P+S+TGEDSAE H HGG  V    LE L      RLA  GEF+RRA 
Sbjct: 62  NPIDEVLAVHFKAPKSYTGEDSAEVHCHGGPLVAQMCLEALISA-GARLAERGEFTRRAV 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            N ++DL  A ++  L+S ++      +M  +SG       + +  LT   S +EA LD 
Sbjct: 121 INRRMDLSAASAVMALVSGQSPKAVEAAMGSLSGATRRAMEELMRDLTRACSHLEATLDM 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E+E +     + +  D+  +   I     +G  G  +  G ++ ++G  N GKSSL N+
Sbjct: 181 PEDE-IPPLDWERLREDLSRIARGIRDLHQRGLAGMALSQGVQVTLVGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L+++  AIVT IPGTTRDV+   +   G  +K+ DTAGIR+++D +E  G+K     +  
Sbjct: 240 LSRQARAIVTPIPGTTRDVVEAAVIHRGVPIKLLDTAGIRDSNDPIEALGVKLARETMLT 299

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGT----------KSDLYSTYTEEYDHL------ 342
           ADL +L+ + +S      P   D   +G+          K+DL +  +  +D +      
Sbjct: 300 ADLRVLVLDGSSP-----PHREDLELLGSLDMPAAAALNKADLGTDPS--WDQVLRDARV 352

Query: 343 ----ISSFTGEGLEELIN-KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
               +S+ +G+G+EEL +  ++SI SN       ++  H+  L  LS+    L+ A  + 
Sbjct: 353 PNVTLSALSGKGVEELKDLMVRSICSNPAVDGAVTMFRHQ--LDALSRAAEALDGALSSP 410

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               LD  A+    A   L    G    E++L+ +F  FC+GK
Sbjct: 411 Y---LDATAQLALEAQRHLASALGLDPTEEVLEAVFRNFCVGK 450


>gi|227485741|ref|ZP_03916057.1| tRNA modification GTP-binding protein TrmE [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227236296|gb|EEI86311.1| tRNA modification GTP-binding protein TrmE [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 454

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 147/461 (31%), Positives = 241/461 (52%), Gaps = 35/461 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFPRKASLRYFFGLDGR- 59
           +TI A+ST A    ISI+R++G     +   I +        P      LRY   +DG  
Sbjct: 3   KTIAAISTPAGTGGISIVRMTGDLTLDIINEIFRPINNRLIDPDIDNRYLRYGHIVDGEG 62

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ ++    +P ++T ED  E + HG    V  IL  L       LA PGEF++RAF
Sbjct: 63  EIVDEVMVAFMKAPATYTREDVCEINCHGSFVAVREILNLLLD-KGADLAEPGEFTKRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE---AD 175
            NG+IDL +AE++ D+I+S  ++         S  +S L G    K+  IR+ ++   A 
Sbjct: 122 LNGRIDLSQAEAVLDIINSTNKLS-------ASQGISQLQGSLTKKIREIRTDLKEGLAR 174

Query: 176 LDFSEE--EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           L++S    ED ++    ++   I   K  I    S    G+++++G    I+G  N GKS
Sbjct: 175 LEYSINFTEDGEDLPVSDITAYIKTAKAKIDDLASTSNKGKLVKDGINTTIVGKPNVGKS 234

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N L  ++ AIVTDIPGTTRD++T  + L  + +KI+DTAGIR+TDD+VEK G+ ++ 
Sbjct: 235 SLLNVLLDENRAIVTDIPGTTRDLITEYISLGDFTLKINDTAGIRDTDDLVEKIGVDKSI 294

Query: 294 LEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE-YDH----L 342
             ++ +DLIL + +++       KK +   +  + + I  K+DL   + E+ +D     +
Sbjct: 295 ELIDESDLILAIFDMSRDFDEEDKKILDLIRGKNALLILNKADLEGKFDEKIFDVNLPII 354

Query: 343 ISSFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            +S   + G+ +L + I+ I   K  K    + ++ RH   L      ++  SLN+ + G
Sbjct: 355 KTSMVDQLGIRKLEDTIRDIFDTKEIKRESVLITNTRHERLLKSAKEKIDQ-SLNDMEAG 413

Query: 402 LDIIAENLRLASV--SLGKITGCVDVEQLLDIIFSKFCIGK 440
           + I A  + L+S    LG I G     +++D +F +FC+GK
Sbjct: 414 IPIDACEVDLSSAYEDLGLIIGESVSGEIMDKVFKEFCVGK 454


>gi|149012956|ref|ZP_01833845.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP19-BS75]
 gi|147763109|gb|EDK70050.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP19-BS75]
          Length = 285

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/284 (37%), Positives = 171/284 (60%), Gaps = 7/284 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG + F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTNSFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMIGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRE
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRE 283


>gi|220905227|ref|YP_002480539.1| tRNA modification GTPase TrmE [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869526|gb|ACL49861.1| tRNA modification GTPase TrmE [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 468

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 142/475 (29%), Positives = 234/475 (49%), Gaps = 51/475 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRI---- 60
           +TI A++T      + I+R+SGP   Q    + +   P  P+  + R +F   GR+    
Sbjct: 5   DTIAAIATPPGSGGVGIVRISGPEAKQT---LARMFLPLSPKFENFRPWFLHRGRVVDWN 61

Query: 61  ---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              LD  L +  P P SFTGED AE H HGG  +V  +LE   ++   R A  GEFSRRA
Sbjct: 62  GENLDDVLAVFMPGPRSFTGEDVAEIHCHGGPFIVQSVLEAALRL-GARQAQQGEFSRRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++A+LI++ +    R  +  + G L+        +L  +R  +   +D
Sbjct: 121 FINGRMDLSQAEAVAELIAAPSREALRYGLNRLDGLLARRTETLRRELEDLRMQVCVAVD 180

Query: 178 FSEEE----DVQNFSSK-EVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAG 231
           F E+E    D   FS+  E +   L        H+ QG +   +++ G  +V+ G  NAG
Sbjct: 181 FPEDEVEGMDAPTFSAAVEKVASAL-------RHLLQGSRRARVMQQGAVVVLAGAVNAG 233

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NAL  ++ A+VTDIPGTTRD L    DL G  V+++DTAG+R+  + +E+ G++R
Sbjct: 234 KSSLMNALLGRNRALVTDIPGTTRDFLEEACDLGGLPVRLTDTAGLRKAAESIEEMGVER 293

Query: 292 TFLEVENADLILLL----------------KEINSKKEISFPKNIDFIFIGTKSDLY--S 333
           +  ++  AD ++L+                 +  +++ +        + +  K DL   S
Sbjct: 294 SRQKLAEADAVVLVLDGGVLGEAGAAAATCPDPAAREVLELAGATPVLVVWNKCDLCTPS 353

Query: 334 TYTEEYDH-----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            +   +         S+F+   +E++   ++++L                    ++    
Sbjct: 354 VFPPRWIQGQTCCTTSAFSDTQVEDMAESLRALLLAGGGGAAAEEGLAPNARQSMALEAA 413

Query: 389 YLEMASLNEK-DCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E+A+L E  D G   D  A  L +A+  L ++TG     ++LD +FS+FCIGK
Sbjct: 414 LAELAALREDVDAGRSYDCCAVRLDVAAAHLAEVTGLSSPAEVLDRVFSQFCIGK 468


>gi|260592851|ref|ZP_05858309.1| tRNA modification GTPase TrmE [Prevotella veroralis F0319]
 gi|260535221|gb|EEX17838.1| tRNA modification GTPase TrmE [Prevotella veroralis F0319]
          Length = 463

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 140/466 (30%), Positives = 239/466 (51%), Gaps = 45/466 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL----DGR 59
           +TI A++T     AI ++R+SG    ++ E + +   KKP          +G+    DG+
Sbjct: 12  DTITALATQP-GGAIGVVRVSGAKAIELTEKVFRGVGKKPLHEAKGNTLHYGVIVDKDGK 70

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D  L+ VF +P S+TGEDS E   HG   V+N +++ L      R A PGE+++RA+ 
Sbjct: 71  EIDDVLVSVFRAPHSYTGEDSTEVSCHGSAYVLNQVVKALID-AGCRQARPGEYTQRAYL 129

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI++      ++++  + G  SS   +  D+L  + S +E +LDFS
Sbjct: 130 NGKMDLSQAEAVADLIAATNRASHQVALSQLKGHFSSELSKLRDQLLKMTSLLELELDFS 189

Query: 180 EEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           + E+++ F+ +  L  +   +   IS  I   + G  ++ G  + I+G +N GKS+L N 
Sbjct: 190 DHEELE-FADRGQLKALAETIHERISVLIKSFETGNALKRGVPVAIIGKTNVGKSTLLNC 248

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIV++I GTTRDV+    +++G   +  DTAG+R TDD VE+ GI+R++ ++  
Sbjct: 249 LLHEEKAIVSNIHGTTRDVIEDTTEIQGITFRFIDTAGLRNTDDQVEQLGIERSYKKLAE 308

Query: 299 ADLILLLKEINSK-KEIS----FPKNIDFIFIGTKSD------------------LYSTY 335
           A +IL + +   +  E+S      +    I +  K D                  + + Y
Sbjct: 309 ARIILWVVDTPPRTSELSDMQARCEGKSLILVRNKVDESAAEEVSASDSPCPVVAISAKY 368

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
               D          LE+LI    +I       +  +   H   L   ++++R + + +L
Sbjct: 369 KRNIDQ---------LEQLIYTSANIPEINENSVIITSVRHYEALTRANESIRRV-IEAL 418

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
                G D+I+E+LR+    L  ITG  +   ++L  IF  FCIGK
Sbjct: 419 ATNLSG-DLISEDLRICLNELADITGGQITPHEVLGNIFKHFCIGK 463


>gi|212546265|ref|XP_002153286.1| mitochondrial GTPase (Mss1), putative [Penicillium marneffei ATCC
           18224]
 gi|210064806|gb|EEA18901.1| mitochondrial GTPase (Mss1), putative [Penicillium marneffei ATCC
           18224]
          Length = 579

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/259 (40%), Positives = 153/259 (59%), Gaps = 29/259 (11%)

Query: 60  ILDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-------------L 105
           +LD G L++ FPSP + TGED  E HVHGG A V  +L  + K  +             +
Sbjct: 19  LLDPGALVLYFPSPRTVTGEDVLELHVHGGPATVKAVLAAIEKCNDVIKSDEDNVSSSLI 78

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           R A PGEF+RRAF N  +DL + E+L + +++ETE QRRL++ G +  LS+ Y  W  +L
Sbjct: 79  RYAEPGEFTRRAFMNDVLDLPQIEALGETLNAETEQQRRLAVRGANNTLSARYEDWRQQL 138

Query: 166 THIRSFIEADLDFSEEEDVQNF--SSKEVLNDIL----FLKNDISSHISQGKLGEIIRNG 219
            + R  +EA +DFSE+   Q+F  S +E+++ +      L+  I  HI     GE++RNG
Sbjct: 139 LYARGELEALIDFSED---QHFDESPQELISSVSTQVDVLRQQIRFHIQNASKGELLRNG 195

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI +LG  NAGKSSL N +  K+ AIV+   GTTRD++ + +DL G+  KI D AG+R 
Sbjct: 196 IKIALLGAPNAGKSSLLNRVVGKEAAIVSTEEGTTRDIVDVGIDLGGWYCKIGDMAGLRS 255

Query: 280 TDD------IVEKEGIKRT 292
           + +       VE EGI+R 
Sbjct: 256 SKNNAERIGAVELEGIRRA 274



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 4/43 (9%)

Query: 402 LDII--AENLRLASVSLGKITG--CVDVEQLLDIIFSKFCIGK 440
           +DI+  AENLR A+ SL +ITG    DVE +L ++F KFC+GK
Sbjct: 537 VDIVTAAENLRFAAESLAQITGRGGADVEDVLGVVFEKFCVGK 579


>gi|32265609|ref|NP_859641.1| tRNA modification GTPase TrmE [Helicobacter hepaticus ATCC 51449]
 gi|32261657|gb|AAP76707.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 476

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 142/465 (30%), Positives = 244/465 (52%), Gaps = 42/465 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T     AISI+RLSG   + +   +  K+   PR A L + +      +D+ L+
Sbjct: 23  TIVAIATPIGVGAISIVRLSGEKAYHIALALTHKESLKPRYAHLCHIYDAQQMPIDEALV 82

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP P S+T +D  E   HGGI     I++   K+   R+A  GEF++RAF  G++DL 
Sbjct: 83  LYFPKPYSYTTQDVCEVQCHGGIVSARAIVQLCLKL-GARMAQAGEFAKRAFLGGRLDLA 141

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           + +++A LI S++    ++ M  + G+L +   +  + L  I +F E  +D+SEE  V+ 
Sbjct: 142 QVQAVAGLIQSQSLEANKILMRQLKGDLGTFVNRTRENLLEILAFSEVHIDYSEE--VEE 199

Query: 187 FSSKEVLNDILFLKNDISS--HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +++   + +++N++S   HIS  +  + I  GY + I+G  N GKSSL NAL + + 
Sbjct: 200 SYIRDIQQKLAYVENELSHIYHISLTR--QSIIEGYTLSIIGKPNVGKSSLLNALLRYER 257

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV++I GTTRD +   L ++G L++I DTAGIRE+DD +E+ GI +T   +  +++I+ 
Sbjct: 258 AIVSEIEGTTRDTIEEMLTIKGSLLRIVDTAGIRESDDKIEQIGILKTKEALMRSNIIVA 317

Query: 305 L--------KEINSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYD-------------- 340
           +         E  +  EI  +  +N   + I  KSDL     EE                
Sbjct: 318 IFDGSRPFDAEDKAIMEILKTQCQNKYILVIINKSDLPLQCEEELLHNLLRLHNKALLCM 377

Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLN 396
             HL + +  EG+++++  ++ ++S         + S     Y L    + LE  + + N
Sbjct: 378 PLHLSTKY--EGVQKVLECLEEVVSTHNGDESMILTSS----YQLDCIKKALECIVKAHN 431

Query: 397 EKDCG-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D G L++ +  ++    S+ KIT   +  +LLD +F+ FC+GK
Sbjct: 432 VLDIGQLELFSYQIQDCIESICKITHPYENAELLDRLFATFCLGK 476


>gi|329565793|gb|AEB92233.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
 gi|329565813|gb|AEB92243.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
          Length = 404

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 208/379 (54%), Gaps = 23/379 (6%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++RAF 
Sbjct: 30  VYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFL 88

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+++T +  + + + +SG +     +  DK+  +   + A +DF 
Sbjct: 89  NGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLVHLLALIDFP 148

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+ DV+    KE+L     +  DI   I   + G +IR G K  I+G  N GKSSL NAL
Sbjct: 149 ED-DVEELERKEMLETAKEIVKDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNAL 207

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   +  A
Sbjct: 208 LKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEA 267

Query: 300 DLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-------- 342
           DLIL        L KE     +I   KNI  +F+  K DL     E E  +L        
Sbjct: 268 DLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIIIE 325

Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDC 400
           +S+    GL+EL + I + +           I ++ RH   L    +Y+E +    E++ 
Sbjct: 326 VSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIEREY 385

Query: 401 GLDIIAENLRLASVSLGKI 419
             D+I  +L  A   +GKI
Sbjct: 386 SEDLITIDLNAALEQIGKI 404


>gi|291536994|emb|CBL10106.1| tRNA modification GTPase trmE [Roseburia intestinalis M50/1]
          Length = 411

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 141/413 (34%), Positives = 225/413 (54%), Gaps = 27/413 (6%)

Query: 49  SLRYFFGLDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107
           ++ Y    DG  ++D+ ++++  +P+S+T ED+ E   HGG+ V+  +LE + K    R 
Sbjct: 5   TIHYGHIKDGDEVIDEVMVVLMRAPKSYTKEDTVEIDCHGGVYVMKRVLETVIKY-GARP 63

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEF++RAF NG+IDL +AES+ D+I ++ E   + S + +SG LS+   +  +KL H
Sbjct: 64  AEPGEFTKRAFLNGRIDLAQAESVIDIIHAKNEFALKSSEQQLSGSLSAAVRKVREKLLH 123

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILG 226
             +FIE+ LD  E   +  +   E L+ I+   + +I   ++    G+I++ G   VI+G
Sbjct: 124 EIAFIESALDDPEHISLDGYP--ETLHGIVEEAQKEIQKLLANSDNGKILKEGISTVIIG 181

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             NAGKSSL N L  ++ AIVTDI GTTRDVL   ++L G ++ + DTAGIRETDD+VEK
Sbjct: 182 KPNAGKSSLLNTLVGEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDVVEK 241

Query: 287 EGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE-- 338
            G+ R    +  ADL + + + +++ +      +   K+   I +  KSDL      E  
Sbjct: 242 IGVDRAKKYLNEADLAIYVVDTSTQLDENDFEIMELLKDRKAIVLLNKSDLTPVTDSESI 301

Query: 339 YDHL------ISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRY 389
             HL      IS+    G+EE    I+ +      ++ F+     ++ RH   L +    
Sbjct: 302 RKHLDKKMIAISAKEQTGIEEFEETIREMFFT--GEVTFNDEVYITNIRHKTALQEARNS 359

Query: 390 LEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L +   +  D G+  D  + +L  A   LG I G    + L++ IFSKFC+GK
Sbjct: 360 LNLVVQSILD-GMPEDFYSIDLMNAYEELGSIVGEAVEDDLVNEIFSKFCMGK 411


>gi|329565799|gb|AEB92236.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
 gi|329565803|gb|AEB92238.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
 gi|329565805|gb|AEB92239.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
          Length = 404

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 208/379 (54%), Gaps = 23/379 (6%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++RAF 
Sbjct: 30  VYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFL 88

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+++T +  + + + +SG +     +  DK+  +   + A +DF 
Sbjct: 89  NGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLVHLLALIDFP 148

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+ DV+    KE+L     +  DI   I   + G +IR G K  I+G  N GKSSL NAL
Sbjct: 149 ED-DVEELERKEMLETAKEIVEDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNAL 207

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   +  A
Sbjct: 208 LKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEA 267

Query: 300 DLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-------- 342
           DLIL        L KE     +I   KNI  +F+  K DL     E E  +L        
Sbjct: 268 DLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIIIE 325

Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDC 400
           +S+    GL+EL + I + +           I ++ RH   L    +Y+E +    E++ 
Sbjct: 326 VSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIEREY 385

Query: 401 GLDIIAENLRLASVSLGKI 419
             D+I  +L  A   +GKI
Sbjct: 386 SEDLITIDLNAALEQIGKI 404


>gi|205829161|sp|Q7VJY2|MNME_HELHP RecName: Full=tRNA modification GTPase mnmE
          Length = 467

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 142/465 (30%), Positives = 244/465 (52%), Gaps = 42/465 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T     AISI+RLSG   + +   +  K+   PR A L + +      +D+ L+
Sbjct: 14  TIVAIATPIGVGAISIVRLSGEKAYHIALALTHKESLKPRYAHLCHIYDAQQMPIDEALV 73

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP P S+T +D  E   HGGI     I++   K+   R+A  GEF++RAF  G++DL 
Sbjct: 74  LYFPKPYSYTTQDVCEVQCHGGIVSARAIVQLCLKL-GARMAQAGEFAKRAFLGGRLDLA 132

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           + +++A LI S++    ++ M  + G+L +   +  + L  I +F E  +D+SEE  V+ 
Sbjct: 133 QVQAVAGLIQSQSLEANKILMRQLKGDLGTFVNRTRENLLEILAFSEVHIDYSEE--VEE 190

Query: 187 FSSKEVLNDILFLKNDISS--HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +++   + +++N++S   HIS  +  + I  GY + I+G  N GKSSL NAL + + 
Sbjct: 191 SYIRDIQQKLAYVENELSHIYHISLTR--QSIIEGYTLSIIGKPNVGKSSLLNALLRYER 248

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV++I GTTRD +   L ++G L++I DTAGIRE+DD +E+ GI +T   +  +++I+ 
Sbjct: 249 AIVSEIEGTTRDTIEEMLTIKGSLLRIVDTAGIRESDDKIEQIGILKTKEALMRSNIIVA 308

Query: 305 L--------KEINSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYD-------------- 340
           +         E  +  EI  +  +N   + I  KSDL     EE                
Sbjct: 309 IFDGSRPFDAEDKAIMEILKTQCQNKYILVIINKSDLPLQCEEELLHNLLRLHNKALLCM 368

Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLN 396
             HL + +  EG+++++  ++ ++S         + S     Y L    + LE  + + N
Sbjct: 369 PLHLSTKY--EGVQKVLECLEEVVSTHNGDESMILTSS----YQLDCIKKALECIVKAHN 422

Query: 397 EKDCG-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D G L++ +  ++    S+ KIT   +  +LLD +F+ FC+GK
Sbjct: 423 VLDIGQLELFSYQIQDCIESICKITHPYENAELLDRLFATFCLGK 467


>gi|167770827|ref|ZP_02442880.1| hypothetical protein ANACOL_02180 [Anaerotruncus colihominis DSM
           17241]
 gi|167666867|gb|EDS10997.1| hypothetical protein ANACOL_02180 [Anaerotruncus colihominis DSM
           17241]
          Length = 456

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 232/458 (50%), Gaps = 25/458 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FGL---- 56
           E +TI A++T      I I+R+SGP  F   E I +  K   R +SL  +   +GL    
Sbjct: 3   EIDTIAAIATPLGTGGIGIVRISGPDAFGTAERIVRLAKG-GRVSSLAGYTCAYGLAADQ 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +G I D+ ++  F  P S+TGED  E   HGG+ +++ +L    K    R A  GEF++R
Sbjct: 62  EGPI-DEVIVTAFRGPHSYTGEDIVEISAHGGVYLMDRLLNACCK-NGARPALAGEFTKR 119

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGK+DL +AE++ DLIS+      R ++    G L    G+  D+LT+  + + A +
Sbjct: 120 AFLNGKLDLTQAEAVIDLISAHGGQAARAALSARGGALYRCVGEIADRLTYFAAHLSAWI 179

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ EEE ++      +  D+      + S     + G ++R G + VI+G  N GKSSL 
Sbjct: 180 DYPEEE-IEAVDPNALQCDLAKCLQRLDSLAGSYETGRLVREGIETVIVGRPNVGKSSLM 238

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N +     +IV+DIPGTTRD+++  +   G++  ++DTAGIR+ DD +E+EG+     ++
Sbjct: 239 NLMTGVKRSIVSDIPGTTRDLVSDTVLCGGFVFHLTDTAGIRKPDDPIEQEGVGLALEQI 298

Query: 297 ENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDH--LI 343
           E A L+L + +       + ++ +   + ++ + +  K+DL        +  ++    LI
Sbjct: 299 ERAQLVLAVFDGSEPLTGDDRRVMEACRGLNALALVNKADLTQVLDAQAFASDFKRVLLI 358

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           S+     ++ L   +  ++    F      + + ++    ++      E     E     
Sbjct: 359 SAHDTNIIKPLTEALTEMVGLGAFDSSAAIVANTRQRAAVMAAAGELREAVEALENGVSY 418

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D +A  +  A  +L ++TG    + ++D +FS+FC+GK
Sbjct: 419 DAVAVCIERALDALLELTGKRASQAVVDSVFSRFCVGK 456


>gi|255321603|ref|ZP_05362761.1| tRNA modification GTPase TrmE [Campylobacter showae RM3277]
 gi|255301459|gb|EET80718.1| tRNA modification GTPase TrmE [Campylobacter showae RM3277]
          Length = 439

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 141/448 (31%), Positives = 236/448 (52%), Gaps = 24/448 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI AV+T     +ISIIRLSG     +   + K     PR A+L   +  +G ++D+ L
Sbjct: 3   ETIAAVATAHGVGSISIIRLSGSGALGLALKLTKITSLIPRYATLTKIYA-EGELIDEAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           LI F +P SFTGED  EF +HGG+ V N IL EL K    RLA  GEFS+RA  NGK+D 
Sbjct: 62  LIYFKAPHSFTGEDVVEFQLHGGLVVANLILGELIK-NGARLARAGEFSKRALINGKMDF 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182
            + E++  LI++++E   ++    M G+L+    +   +L    +F+E  +D+++++   
Sbjct: 121 SKIEAINSLINAKSEDSVKIIARTMRGDLAKFANEIRSELVKTLAFVETSIDYADDDLPA 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+    S+ +  +   L   ++  ISQ + G  +  G+KI I+G  N GKSS+ N+L   
Sbjct: 181 DLLESISQMLKQNSAKLDKIVA--ISQSRKG--LLEGFKIAIVGKPNVGKSSILNSLLSY 236

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AI++D  GTTRD +   L +  +LV+I DTAGIR+    +E+ GI  +   ++ AD+I
Sbjct: 237 ERAIISDEAGTTRDSIEEALKIGTHLVRIIDTAGIRKNAGKIEQIGISYSLRAIKEADVI 296

Query: 303 LLL--------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           L +        ++ N   E+         ++  K DL   +    ++ I     +G +E+
Sbjct: 297 LAIFDASQEADEQDNEILELLKRSQKKIFYVLNKCDLGVKFISP-ENPIKICAKQGTDEI 355

Query: 355 INKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGLDIIAENLRLA 412
           I+ +K+ L + +  ++  +           S+ + R L + + +E    L++ A  L  A
Sbjct: 356 ISNLKTYLDAQETSEILLNSTRQISSCEAASEAIKRALNLLAGSE----LELFAYELNTA 411

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +  IT   +  ++LD +FS FC+GK
Sbjct: 412 IEQISSITKPFERSEILDEMFSNFCLGK 439


>gi|242278542|ref|YP_002990671.1| tRNA modification GTPase TrmE [Desulfovibrio salexigens DSM 2638]
 gi|242121436|gb|ACS79132.1| tRNA modification GTPase TrmE [Desulfovibrio salexigens DSM 2638]
          Length = 483

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 230/459 (50%), Gaps = 30/459 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----PRKASLRYFFGLDGRIL 61
           TI A++T      + IIR+SG     + + I    K       P           D   +
Sbjct: 30  TIAAIATPPGDGGVGIIRISGEQALSIAKDIFHPAKDSFSGFKPYTMHYGTIVDADSVEI 89

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE-LAKMPNLRLANPGEFSRRAFEN 120
           D  L +  P P S+TGED+ E + HGG A+++ +L E LAK    RLAN GEF+ RAF N
Sbjct: 90  DDVLTVFMPGPNSYTGEDTVEINCHGGRAILSAVLGEVLAK--GARLANAGEFTLRAFLN 147

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++A++I + +    +L+   +SG L         +L  +R+ +   +DF E
Sbjct: 148 GRMDLTQAEAVAEMIHAPSRGAAQLAKVKLSGVLGERISGLRLRLEELRAQLCVAVDFPE 207

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +E ++    +++ +++     +IS  +S  +  +  R G   V+ G  NAGKSSL NAL 
Sbjct: 208 DE-LECLPLEQMQSEVGDAVKNISEILSGVERTKAWREGGLAVLSGKVNAGKSSLLNALL 266

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDIPGTTRD +   L+L+G  V++ DTAG+RET D VE  G+         AD
Sbjct: 267 GRNRAIVTDIPGTTRDFIEETLNLDGLQVRVVDTAGLRETSDAVELAGVDMGRDLASQAD 326

Query: 301 LILLLKEINSKKEISF----PKNIDF----IFIGTKSDLYSTYTEE--------YDHL-I 343
           L+LL+  I+  K  +     P+  D     + +  KSDL               Y+ + I
Sbjct: 327 LVLLI--IDGSKPFALADLDPQFADMADKCLAVINKSDLEQADPSPAVIMRESGYEVVEI 384

Query: 344 SSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDCG 401
           S+  G+G+E L   I+  IL    +  P  +  + R    L +  V   E+         
Sbjct: 385 SAKKGQGIERLAALIREHILQGAGEPDPDELVPNSRQAASLKKAHVELEELMGDIAMQVP 444

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D++   L  A  SL +ITG +  +++L+ IF  FC+GK
Sbjct: 445 YDLLGVRLESACSSLSEITGEITPQEVLNSIFENFCVGK 483


>gi|325478822|gb|EGC81932.1| tRNA modification GTPase TrmE [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 455

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 144/457 (31%), Positives = 240/457 (52%), Gaps = 23/457 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-------KKKPFPRKASLRYFFGL 56
           E+ TI A+ST +    ISI+R+SG   +++ + I +        +    RK       GL
Sbjct: 2   EERTIAAISTPSGTGGISIVRMSGNKSYEIIKEIFRPIAGKEIDRDEDNRKMRYGNIIGL 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           DG I+D+ ++     P ++T ED  E + HG    V  IL  L       LA  GEF++R
Sbjct: 62  DGEIIDEVMVCFMKGPYTYTREDICEINCHGSFVSVKKILNLLLD-KRCDLAEGGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ D+I++  E+ ++  +  ++G L          L    S +E  +
Sbjct: 121 AFLNGRIDLSQAEAVLDIINATNELSQKEGVNQLNGALREKINDIRKSLLEALSRLEYSI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +F+E  D ++ S  E++  +   K+ I   +S    G+I+R+G    I+G  N GKSSL 
Sbjct: 181 NFTE--DGEDLSPDEIIKYMDDAKSMIDRLLSTSNKGKILRDGINTTIIGKPNVGKSSLL 238

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  ++ AIVTDIPGTTRD++T  +    + +K++DTAGIR+T+D+VEK G+ ++   V
Sbjct: 239 NNLLNENRAIVTDIPGTTRDLITEYISFGDFTLKVNDTAGIRDTEDLVEKIGVDKSIELV 298

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTE-----EYDHLISS 345
           + +DLI+ + + +       KK +S     + I I  K DL   + E     E+  + +S
Sbjct: 299 DKSDLIIAIFDTSRDFDEEDKKILSLINGKNAIIILNKLDLSPKFDESKLGSEHKIVKTS 358

Query: 346 FTG-EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ-TVRYLEMASLNEKDCGLD 403
            T  EG++ L   I  +   K  K    + ++ RH   L + +++  E  +  ++   LD
Sbjct: 359 MTNEEGIDLLEAAITEMFDTKDLKRESVLITNTRHERLLKEASLKLNESLTDIKRGIPLD 418

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +LR A   LG I G    ++++D +F +FC+GK
Sbjct: 419 ACEVDLRGAYDDLGLIIGESVSDEIMDKVFKEFCVGK 455


>gi|149197584|ref|ZP_01874634.1| tRNA modification GTPase [Lentisphaera araneosa HTCC2155]
 gi|149139154|gb|EDM27557.1| tRNA modification GTPase [Lentisphaera araneosa HTCC2155]
          Length = 452

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 149/464 (32%), Positives = 241/464 (51%), Gaps = 36/464 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDG 58
           M+H+  TI A++T A   +I+IIR+SG     V + + + K         R   G  +D 
Sbjct: 1   MDHD--TIAALAT-APGGSIAIIRVSGLDALSVAKKVWRGKTNLENNER-RLVLGQMIDP 56

Query: 59  RIL---DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
                 D+ + +    P+++TGED  EF  HGG       L    K         GEF++
Sbjct: 57  ETQEPGDQAMAVYMKGPQTYTGEDVVEFQCHGGNFTAKHTLMCTLKAGARAAEA-GEFTK 115

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSF 171
           RAF NGK+DL +AE++ D+IS+ +E   ++++  ++G    E+ S+Y    D L+ + + 
Sbjct: 116 RAFVNGKLDLTQAEAVMDVISAGSEKAMQIAVNQLNGRFGNEIRSMY----DGLSDLLAE 171

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNA 230
            E  +DF +E+   N++  E +N  L   + + + + +G K GE++R+G K++I G  NA
Sbjct: 172 CEVRMDFVDED--LNWTPPETMNKTLNDASTLMAKLLEGRKDGEVLRDGVKVIIGGPPNA 229

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSL N +  +D AIVTDI GTTRD L     + G  +KI+DTAGIRE +DIVE+ GI+
Sbjct: 230 GKSSLMNHVLGRDRAIVTDIAGTTRDTLEEYTRIRGIPLKITDTAGIREAEDIVERTGIE 289

Query: 291 RTFLEVENADLILLLKEINSKKEISFP-----KNIDFIFIGTKSD------LYSTYTEEY 339
           R+   ++ A LIL L +++   E   P      +   I I  KSD      L S + + +
Sbjct: 290 RSKQALKEAQLILWLMDLSRPLEDQLPPEDFKSDAPLIVILNKSDIALEQELPSYFNQSH 349

Query: 340 -DHLISSFTGE-GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
             H+  S   E  L  L + I +++       +P  +  + RH   L Q V+ ++     
Sbjct: 350 VSHVRVSVKSEDNLNRLYDLIEEAVWQEDHHHIP-DVAVNARHGVLLEQAVQQIDDCQAC 408

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 ++++ +LR A   LG+I G   +  +L  IF ++CIGK
Sbjct: 409 IDGEAWELVSVHLRGALDPLGEILGLTLMPDILHTIFGRYCIGK 452


>gi|329565815|gb|AEB92244.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
          Length = 404

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 207/379 (54%), Gaps = 23/379 (6%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++RAF 
Sbjct: 30  VYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFL 88

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+++T +  +   + +SG +     +  DK+  + + + A +DF 
Sbjct: 89  NGRIDLSQAEAVIDIITAKTMLANKYPQKQLSGHIGQKMKELKDKIMGLLAHLLALIDFP 148

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+ DV+    KE+L     +  DI   I   + G +IR G K  I+G  N GKSSL NAL
Sbjct: 149 ED-DVEELERKEMLETAKEIVEDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNAL 207

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   +  A
Sbjct: 208 LKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEA 267

Query: 300 DLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-------- 342
           DLIL        L KE     +I   KNI  +F+  K DL     E E  +L        
Sbjct: 268 DLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIIIE 325

Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDC 400
           +S     GL+EL + I + +           I ++ RH   L    +Y+E +    E++ 
Sbjct: 326 VSPVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIEREY 385

Query: 401 GLDIIAENLRLASVSLGKI 419
             D+I  +L  A   +GKI
Sbjct: 386 SEDLITIDLNAALEQIGKI 404


>gi|332296911|ref|YP_004438833.1| tRNA modification GTPase mnmE [Treponema brennaborense DSM 12168]
 gi|332180014|gb|AEE15702.1| tRNA modification GTPase mnmE [Treponema brennaborense DSM 12168]
          Length = 509

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 143/493 (29%), Positives = 239/493 (48%), Gaps = 79/493 (16%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDG-----RILDKGLLIVFPSP 72
           + IIR SG  C ++   +  + +     A  +L Y + +D      R +D+ L+ VF +P
Sbjct: 24  LGIIRTSGKGCIELVAALFSRPEALRNAAGNTLVYGWIVDPAGGGVRRIDEVLISVFRAP 83

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
           +SFTGED AE   HGG A+V GI   L +    R A  GEF+ RAF NGK DL  AE++ 
Sbjct: 84  KSFTGEDMAEICCHGGPAIVTGIYRLLTEN-GFRAAQHGEFTFRAFINGKADLTRAEAVH 142

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           ++IS++T+  R  +   ++G L         +L    + +EA++++ E+E+    +  + 
Sbjct: 143 EIISAKTDESRGRAAGRLAGSLYDEISAVKKELVATLASVEAEIEYPEDEE----TIADA 198

Query: 193 LNDILF--LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
            +D     ++ +++S  S     ++ ++G ++V+ G +NAGKSSLFN L K++ AIV+DI
Sbjct: 199 FDDTRLRRVETELASLCSSWASEKLYQDGARVVLCGRTNAGKSSLFNMLLKEERAIVSDI 258

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD---------- 300
            GTTRD L       G   ++ DTAG+RETDD+VE+ G++RTF   ++AD          
Sbjct: 259 HGTTRDWLESWASFGGIPARLFDTAGLRETDDVVEQSGVRRTFDLTKDADLILYVVDAVE 318

Query: 301 ----------------------LILLLKEINSKKEISFPKNIDFIFIGT---KSDLYSTY 335
                                 LIL+L + +   E      +    + T    +D  + +
Sbjct: 319 GITDEDESFLTAFAAAPNVRTPLILILNKCDKLSESGDSAAMHAATMNTATMNTDAATRH 378

Query: 336 TEEYDHL------------------------ISSFTGEGLEELINKIKSIL----SNKFK 367
           T  ++                          +S+ TG G   L   IK+ L    S   +
Sbjct: 379 TAAFNSAGSTTAEDFTSNAALGSFSPAAAVRLSAKTGSGTAALTKAIKACLTAAASTDRE 438

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQ 427
           +        K+       +VR+  +A+   ++  LD +A+++  A  +LG+ITG V  + 
Sbjct: 439 QPGLGSARQKQCAQDALDSVRHALLAA--RQNYPLDAVAQDMEDALDALGEITGAVTPDD 496

Query: 428 LLDIIFSKFCIGK 440
           +LD +FS FC+GK
Sbjct: 497 ILDTVFSNFCLGK 509


>gi|329565795|gb|AEB92234.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
          Length = 404

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 207/379 (54%), Gaps = 23/379 (6%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++RAF 
Sbjct: 30  VYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFL 88

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+++T +  + + + +SG +     +  DK+  +   + A +DF 
Sbjct: 89  NGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLVHLLALIDFP 148

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+ DV+    KE+L     +  DI   I   + G +IR G K  I+G  N GKSSL NAL
Sbjct: 149 ED-DVEELERKEMLETAKEIVKDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNAL 207

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   +  A
Sbjct: 208 LKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEA 267

Query: 300 DLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-------- 342
           DLIL        L KE     +I   KNI  +F+  K DL     E E  +L        
Sbjct: 268 DLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIIIE 325

Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDC 400
           +S     GL+EL + I + +           I ++ RH   L    +Y+E +    E++ 
Sbjct: 326 VSPVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIEREY 385

Query: 401 GLDIIAENLRLASVSLGKI 419
             D+I  +L  A   +GKI
Sbjct: 386 SEDLITIDLNAALEQIGKI 404


>gi|320537537|ref|ZP_08037479.1| tRNA modification GTPase TrmE [Treponema phagedenis F0421]
 gi|320145619|gb|EFW37293.1| tRNA modification GTPase TrmE [Treponema phagedenis F0421]
          Length = 467

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 144/456 (31%), Positives = 230/456 (50%), Gaps = 51/456 (11%)

Query: 22  IIRLSGPSCFQVCEFICKKKKPFPRKASLR--------YFFGLD-GRILDKGLLIVFPSP 72
           I+R SG +C +      +  + F R A+L+        Y + +D G+ LD+ + +V+ +P
Sbjct: 26  IVRTSGKTCIE------RVSRFFSRPAALQKAPGNSIVYGWIIDAGKKLDEVVALVYRAP 79

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
           +SFTGE+  E   HGG+  V   L  L      R A  GEFS R+F NGK DL  AE++A
Sbjct: 80  KSFTGENCIEIICHGGVQTVKS-LYRLCLDSGFRAAEKGEFSFRSFINGKTDLTGAEAIA 138

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE-EEDVQNFSSKE 191
           ++I ++T   + L+   +SG L +      +KL    + IE ++++ E EE + +     
Sbjct: 139 EIIGAKTLQAQTLAAGRLSGNLFAELQAIKEKLLTALAAIEVEIEYPEDEETIADAFDTA 198

Query: 192 VLNDILFLKNDISSHISQGKLGE-IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           +L + L    ++ +     + GE I + G +IV+ G +N+GKSSLFNAL K+D AIV+DI
Sbjct: 199 LLEEPLTRLQELEAS----RAGEKIFQEGVRIVLAGKTNSGKSSLFNALLKEDRAIVSDI 254

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            GTTRD L  D+D  G  VK+ DTAGIRET D +E  G++R+   +  AD +  L +  +
Sbjct: 255 HGTTRDWLETDIDFSGIPVKLFDTAGIRETSDTIEAIGVQRSLDLLAEADAVFYLADGRT 314

Query: 311 KKEISFPKNIDFIFIGTKS------------------------DLYSTYTEEYDHL-ISS 345
           K     P++ DFI   TK                          L +   +E+  + I S
Sbjct: 315 KLS---PEDKDFIVQNTKPLIVVRSRAALMTDGEKDYALKEMRALSAQAKKEFSCICIDS 371

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
            T EG+  L+    ++++  K      S+ + ++ +                 +   LD 
Sbjct: 372 KTMEGVGALVQTTAALITEGKPATSDISLGTERQKIAVQQAAAAAKHALHAARQGFPLDA 431

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I +++  +   LG+ITG V  + +LD IFS FC+GK
Sbjct: 432 IVQDIEESLAFLGEITGEVRSDDILDKIFSGFCVGK 467


>gi|149919106|ref|ZP_01907590.1| tRNA modification GTPase TrmE [Plesiocystis pacifica SIR-1]
 gi|149820036|gb|EDM79457.1| tRNA modification GTPase TrmE [Plesiocystis pacifica SIR-1]
          Length = 445

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 142/452 (31%), Positives = 229/452 (50%), Gaps = 36/452 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI  V+TG     ++I+RLSGP+   +   +   + P PR A+LR        + ++ L+
Sbjct: 12  TIVGVATGRPDGGVAIVRLSGPAARTIAAAMLTGELPEPRVAALRRLV-----LGERALV 66

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           +  P P SFTGED  E HVHGG   V  ++E          A PG+F+RRAFE+G++ L 
Sbjct: 67  LDMPGPRSFTGEDVVELHVHGGERNVGQVVEAALAA-GASPAGPGDFTRRAFEHGRLSLD 125

Query: 127 EAESLADLISSETE----MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +AE +A +I ++T+      RRL    ++GEL         +L  +R  +EA+LDF E  
Sbjct: 126 QAEGIAAIIGAQTQGALDQARRL----VAGELGRAVEAVHGRLRLLRVEVEANLDFPE-- 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV              L+ ++   +++ + G   R   ++V+ G  NAGKSSLFNAL  +
Sbjct: 180 DVSAADEARFAETAASLRVELEGWLARFEGGRRARERARVVLAGPPNAGKSSLFNALLGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADL 301
             A+V+   GTTRD +  +L+LE   V + DTAG+RE ++D +E  G+     ++  AD+
Sbjct: 240 SRALVSPTAGTTRDFVEAELELE-RSVALVDTAGLREASEDAIELAGVALGQDQLAGADV 298

Query: 302 ILLLK--------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           ++ L+        E   ++ +        I    K+DL S         +S+ TG GL++
Sbjct: 299 VIWLEGADQPALAESERQRWLEGADTATVIPALAKADLDSPRVVAGWLSLSAHTGAGLDD 358

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLA 412
           L   +   +    + +  +     RH    ++ V  L E+ +   +  GL+++A +L +A
Sbjct: 359 LRRALADAVRPGEQWIGLA-----RHRQCAAEAVEALGEVEAQLREGLGLELVAFSLAVA 413

Query: 413 SVSLGKITGCVDV----EQLLDIIFSKFCIGK 440
              LG ITG   +    E++L  IFS FCIGK
Sbjct: 414 QTRLGAITGHTGLGPVGEEVLHAIFSSFCIGK 445


>gi|297570497|ref|YP_003691841.1| tRNA modification GTPase TrmE [Desulfurivibrio alkaliphilus AHT2]
 gi|296926412|gb|ADH87222.1| tRNA modification GTPase TrmE [Desulfurivibrio alkaliphilus AHT2]
          Length = 474

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 139/423 (32%), Positives = 217/423 (51%), Gaps = 29/423 (6%)

Query: 46  RKASLRYFFGLD---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102
           R   LRY + ++   GR LD+ + +   +P ++T ED  E H HGG  V+  IL  +   
Sbjct: 53  RSHQLRYGWIVEPESGRPLDEVMAVYMAAPATYTREDVVEIHGHGGYVVLREILGLILAR 112

Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162
             +R A  GEF++RAF NG+IDL  AE++ D++++ T     L+M  + G L        
Sbjct: 113 EGVRAAEAGEFTKRAFLNGRIDLTRAEAVLDVLNAGTREGLNLAMSQLQGGLQQQLEPVR 172

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI-LFLKNDISSHISQGKLGEIIRNGYK 221
             L  + + +E  +DF +E D +   +  +   + L ++  +   + +   G I R G  
Sbjct: 173 RALLEVLAVVEVAIDFPDE-DAEIIDTAALGRRLELEVRQPLQELLERADRGRIFREGAT 231

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +VILG  N GKSSL NAL + + AIVT IPGTTRD +   L++ G  ++I DTAGIRET 
Sbjct: 232 VVILGRPNVGKSSLLNALLQDERAIVTAIPGTTRDTIEECLNIHGMPLRIVDTAGIRETT 291

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNI---DFIFIGTKSDLYS-- 333
           + VE  GI+R+   V  ADL+LLL E  S+   ++++   ++     + +  K DL    
Sbjct: 292 EEVEGIGIERSRRRVAEADLVLLLVEAGSEPSSEDMALFDSVREKKVLVVVNKLDLLGDA 351

Query: 334 ------TYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLP-FSIPSHKR 378
                      + H         IS+    GLE+L + +  ++S    + P ++   + R
Sbjct: 352 SPAAAEAALAAWRHRFPGRELTGISARARVGLEQLEDLVFRLISGDEPRDPGYACVPNAR 411

Query: 379 HLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437
           H   L++T+  LE            +++A  L+    SLG+I G V  E+LLD IFS FC
Sbjct: 412 HRAALARTLPALERVQQGLAAGLAPELLAVELQACLGSLGEIIGEVGSEELLDTIFSSFC 471

Query: 438 IGK 440
           IGK
Sbjct: 472 IGK 474


>gi|71028036|ref|XP_763661.1| tRNA modification GTPase [Theileria parva strain Muguga]
 gi|68350615|gb|EAN31378.1| tRNA modification GTPase, putative [Theileria parva]
          Length = 562

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 184/332 (55%), Gaps = 30/332 (9%)

Query: 1   MNHEKETIFAVSTGALP---SAISIIRLSGPSCFQVCEFICKKKKPFPRKASL----RYF 53
           +N   ETI+ +S+G +P    A+++IR+SGP+       + K     P K       + +
Sbjct: 47  LNVLNETIYGLSSG-VPEGGCAVAVIRISGPNSLHTLNLLTKNSDNVPYKPRFVKLCKLY 105

Query: 54  FGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-----LRLA 108
             ++  ++D  L + F SP S+TG+D  E H HG   ++  + +    + N     LR A
Sbjct: 106 SLINNNLIDDALTLYFKSPNSYTGDDVVEIHTHGNEVIIKELFDNFRHIANNYNIKLRQA 165

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
             GEF+RRA+ + K++L++ ES+ +LI S+  +Q++ SM  ++  L  +Y +W ++L  I
Sbjct: 166 EKGEFTRRAYYSNKLNLIQVESINELIRSKNYIQKQNSMLKLNNSLCEIYKRWSNELIDI 225

Query: 169 RSFIEADLDFSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            S +E  +DF EE   D+       +LN I  L  +I   I+  K  E I +G K+++LG
Sbjct: 226 ISKVEGSIDFQEESCSDIILKDKSSILNPIQNLTEEIFKFINDKK--ETIVDGIKLLLLG 283

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET------ 280
            +N+GKSS  N L   D++IV++IPGTTRD++ ++ +L+G   +I+D+AGI         
Sbjct: 284 PTNSGKSSFINNLFNDDISIVSNIPGTTRDLIRVNYNLDGLNYQITDSAGINNRILDGDT 343

Query: 281 -------DDIVEKEGIKRTFLEVENADLILLL 305
                  +D +E  GIK+   E+E +++IL L
Sbjct: 344 NATESLDNDTIELIGIKKALNEIETSNVILFL 375


>gi|282934246|ref|ZP_06339523.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1]
 gi|281301720|gb|EFA93987.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1]
          Length = 332

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 182/316 (57%), Gaps = 26/316 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---G 58
           E +TI A+ST      ISI+RLSG    ++   + K K    + AS    +G  +D    
Sbjct: 6   EFDTIAAISTPIGEGGISIVRLSGEDAVKIANKLFKGK-DLSKVASHTINYGHIIDPETS 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ ++ V  +P++FT ED  E + HGGI V N IL+ L K    R+A  GEF++RAF
Sbjct: 65  KVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLKH-GARMAEAGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR-------SF 171
            NG+IDL +AES+ D++ ++T+  R+++M       + L G  +DK+ ++R       + 
Sbjct: 124 VNGRIDLTQAESVMDIVRAKTDKARQVAM-------NQLEGGLLDKIRNMRQEILDTLAN 176

Query: 172 IEADLDFSE--EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           +E ++D+ E   + V     +E    ++   N +    +QGK   I+RNG    I+G  N
Sbjct: 177 VEVNIDYPEYDADQVTATQMQETSKKVIEAINRLLKTANQGK---IMRNGLATAIVGRPN 233

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKSSL N L + D AIVTD+ GTTRD L   + + G  +K+ DTAGI  T+D VEK G+
Sbjct: 234 VGKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTEDKVEKIGV 293

Query: 290 KRTFLEVENADLILLL 305
           +R+   +E ADL+LLL
Sbjct: 294 ERSKKAIEQADLVLLL 309


>gi|205829164|sp|Q6APY7|MNME_DESPS RecName: Full=tRNA modification GTPase mnmE
          Length = 467

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 145/479 (30%), Positives = 236/479 (49%), Gaps = 60/479 (12%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGR 59
           + ETI A+ST      I +IR+SG     + + I +         S + ++G     DG 
Sbjct: 7   DNETIAAISTPMGTGGIGVIRISGKESLTILQTIFRPHNDSCSYRSHQMYYGQIVAADGH 66

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+ L++   +P+++T ED  E H HG   V+  +LE L       LA PGEF++RAF 
Sbjct: 67  QLDEVLVVYMRAPKTYTCEDIVEIHCHGNFLVLQNVLE-LVIEKGASLAEPGEFTKRAFF 125

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D++S++T     ++ E ++G L        + L H+R+  E  +DF 
Sbjct: 126 NGRIDLTKAEAVIDVLSAKTRKGVDVAQEQLAGSLYRRIEPIRNALVHMRALFEVAIDFP 185

Query: 180 EE-EDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSS 234
           ++  D+ ++   +     L LK ++ + + +       G I R G  +VI G  N GKSS
Sbjct: 186 DQSHDIVDYEQID-----LQLKTEVIAPVKELLAGVDRGRIYRQGISMVIAGRPNVGKSS 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NA+ +++ A+VT I GTTRD +   +D+ G  V+I DTAGIR     VE  GI+R   
Sbjct: 241 LLNAVLQEERALVTSIAGTTRDSIEEMVDILGMPVRIVDTAGIRRQAGEVEALGIQRAKD 300

Query: 295 EVENADLIL---------------LLKEINSKKEISFPKNIDFIF-IGTKSD-LYSTYTE 337
            + +ADL+L               L ++I  K  I+    +D +   GT +  L      
Sbjct: 301 LINSADLVLFMVDGSRQLDQSDLELYEDIAHKPMIAVINKLDLLAEDGTAAAALLDFVPA 360

Query: 338 EYDHL-ISSFTGEGLEELINKIKSILSNK---------------FKKLPFSIPSHKRHLY 381
               L IS+  GEGLE L   I ++++                  K L  ++ + +R + 
Sbjct: 361 SVPRLAISAREGEGLEALKQAIFTVVTGSDTPWDEEGCAPNLRHKKSLEATLIAAERMVD 420

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L+Q +   ++ S++ ++C LD            LG I G    + + D+IFS+FC+GK
Sbjct: 421 DLAQGMGSSDLLSIDMQEC-LD-----------QLGDIIGITTTDDVFDVIFSEFCLGK 467


>gi|159481624|ref|XP_001698878.1| hypothetical protein CHLREDRAFT_121098 [Chlamydomonas reinhardtii]
 gi|158273370|gb|EDO99160.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 465

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 143/462 (30%), Positives = 227/462 (49%), Gaps = 56/462 (12%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPR------KASLRYFFG--LDG--RILDKGLLIV 68
           ++SIIRLSG     +     K  +P  R       AS R ++G  +DG   +LD+ LL+V
Sbjct: 20  SVSIIRLSGTEAVPIA---LKAFRPGGRFRIGWSPASHRVYYGTAVDGDENVLDEVLLLV 76

Query: 69  FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEA 128
             SP S+T ED  EFH HGG      +   L +    R A PGEF+ RAF NG++DL +A
Sbjct: 77  MLSPRSYTAEDVVEFHCHGGGVCAARVQRALIEA-GARPAKPGEFTLRAFLNGRLDLAQA 135

Query: 129 ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS 188
           ES+++L+ + T      ++ G+ G + S       +   + + +EA LDF  +ED+    
Sbjct: 136 ESVSELVGARTAAAADSALAGLRGGVGSAVSDMRRQCLDLLAELEARLDF--DEDLPPID 193

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
              + + I  ++  I   +   + G ++R G ++ I+G  N GKSSL NA    D AIVT
Sbjct: 194 VPALKSQIEAIQAGIEKALRTARAGSLLRRGLQVAIVGRPNVGKSSLLNAWTNSDRAIVT 253

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE- 307
           +I GTTRDVL   L + G  V + DTAGIR++ D+VE+ G++R+      AD+++++ + 
Sbjct: 254 EIAGTTRDVLEAQLSVGGVPVTLLDTAGIRDSTDVVERIGVERSQAAAAAADVVIMVVDS 313

Query: 308 ----INSKKEI--SFPKNIDFIFIGTKSDL------------YSTYTEEYDHLISSFTG- 348
                ++  EI  S   +   + +  K DL             ST++       S   G 
Sbjct: 314 AEGWTDADTEIYRSLWGDGPALLVANKDDLRAAGAAIQLVERQSTFSATVRTSASQRKGL 373

Query: 349 ----------EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                      G  +L        +   ++    + SH+  L  LS++V           
Sbjct: 374 ESLDAALLDLAGAPQLAASGGVSWAVNERQAEALVRSHE-ALMRLSESV---------AA 423

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  LD    +LR A ++LG+++G    E++LD +FS+FCIGK
Sbjct: 424 DLPLDFWTIDLRSALLALGEVSGDEVAEEVLDNVFSRFCIGK 465


>gi|51244709|ref|YP_064593.1| tRNA modification GTPase TrmE [Desulfotalea psychrophila LSv54]
 gi|50875746|emb|CAG35586.1| probable tRNA modification GTPase (TrmE) [Desulfotalea psychrophila
           LSv54]
          Length = 501

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 145/479 (30%), Positives = 236/479 (49%), Gaps = 60/479 (12%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGR 59
           + ETI A+ST      I +IR+SG     + + I +         S + ++G     DG 
Sbjct: 41  DNETIAAISTPMGTGGIGVIRISGKESLTILQTIFRPHNDSCSYRSHQMYYGQIVAADGH 100

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+ L++   +P+++T ED  E H HG   V+  +LE L       LA PGEF++RAF 
Sbjct: 101 QLDEVLVVYMRAPKTYTCEDIVEIHCHGNFLVLQNVLE-LVIEKGASLAEPGEFTKRAFF 159

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D++S++T     ++ E ++G L        + L H+R+  E  +DF 
Sbjct: 160 NGRIDLTKAEAVIDVLSAKTRKGVDVAQEQLAGSLYRRIEPIRNALVHMRALFEVAIDFP 219

Query: 180 EE-EDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSS 234
           ++  D+ ++   +     L LK ++ + + +       G I R G  +VI G  N GKSS
Sbjct: 220 DQSHDIVDYEQID-----LQLKTEVIAPVKELLAGVDRGRIYRQGISMVIAGRPNVGKSS 274

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NA+ +++ A+VT I GTTRD +   +D+ G  V+I DTAGIR     VE  GI+R   
Sbjct: 275 LLNAVLQEERALVTSIAGTTRDSIEEMVDILGMPVRIVDTAGIRRQAGEVEALGIQRAKD 334

Query: 295 EVENADLIL---------------LLKEINSKKEISFPKNIDFIF-IGTKSD-LYSTYTE 337
            + +ADL+L               L ++I  K  I+    +D +   GT +  L      
Sbjct: 335 LINSADLVLFMVDGSRQLDQSDLELYEDIAHKPMIAVINKLDLLAEDGTAAAALLDFVPA 394

Query: 338 EYDHL-ISSFTGEGLEELINKIKSILSNK---------------FKKLPFSIPSHKRHLY 381
               L IS+  GEGLE L   I ++++                  K L  ++ + +R + 
Sbjct: 395 SVPRLAISAREGEGLEALKQAIFTVVTGSDTPWDEEGCAPNLRHKKSLEATLIAAERMVD 454

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L+Q +   ++ S++ ++C LD            LG I G    + + D+IFS+FC+GK
Sbjct: 455 DLAQGMGSSDLLSIDMQEC-LD-----------QLGDIIGITTTDDVFDVIFSEFCLGK 501


>gi|153952344|ref|YP_001397952.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. doylei
           269.97]
 gi|166200471|sp|A7H372|MNME_CAMJD RecName: Full=tRNA modification GTPase mnmE
 gi|152939790|gb|ABS44531.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 442

 Score =  182 bits (462), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 149/477 (31%), Positives = 231/477 (48%), Gaps = 79/477 (16%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISI+RLSG    +      +K K  PR A+    F  +  I+D+ +
Sbjct: 3   DTIAAIATAHGVGSISIVRLSGERALEFALRFSRKTKLTPRHATFTKLFNQNNEIIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF  HGG +V   +LEEL  +   R A  GEFS+RA  NGK+  
Sbjct: 63  MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARFALAGEFSKRACLNGKMTP 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D+++++   
Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181

Query: 186 NFSSK---------EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +   K         ++L +I  L        SQ K G I   G+KI I+G  N GKSSL 
Sbjct: 182 DLLEKISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIIGKPNVGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D +E+ G+  +   +
Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDTIEQIGVALSKKSL 291

Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327
           E+AD+IL +        KE         N+ K+I +              +N +FI +  
Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFELLANTDKKIFWILNKSDLENVFKNTRNKNFIKLSA 351

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           + D+ +   EE  + ++SF  EG+     +LIN  K      F+                
Sbjct: 352 QKDI-ALLKEELQNYLNSFDSEGIMVSSLDLINACKISSEAIFR---------------- 394

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                    A    ++  L++ A  L LA   L + T     +++LD +F  FC+GK
Sbjct: 395 ---------AKELLEESSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|331086948|ref|ZP_08336024.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409609|gb|EGG89048.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 400

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 142/413 (34%), Positives = 221/413 (53%), Gaps = 41/413 (9%)

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
           +DG   +D+ L+++   P S+TGED+ E   HGG+ V+  ILE + K    R A PGEF+
Sbjct: 1   MDGEETIDEVLVLLMRGPHSYTGEDTVEIDCHGGVYVMKRILETVIKY-GARPAEPGEFT 59

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR----- 169
           +RAF NG++DL +AE++ D+I S+ E         +   +S L G  ++K++ IR     
Sbjct: 60  KRAFLNGRLDLSQAEAVIDVIQSKNEY-------ALKSSVSQLKGSVLEKISEIRKEILY 112

Query: 170 --SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
             +FIE  LD  E   +  +  K +   +  L+  I   +     G II+ G + VI+G 
Sbjct: 113 HTAFIETALDDPEHISIDGYGEK-LQGTVEKLQGAIRRLLESADNGRIIKEGIQTVIVGK 171

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL N LA K+ AIVTDI GTTRD+L  ++ + G  + I DTAGIR+T+DIVEK 
Sbjct: 172 PNAGKSSLLNVLAGKERAIVTDIEGTTRDILEENIQINGISLNIIDTAGIRDTEDIVEKI 231

Query: 288 GIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           G+ +     ++ADLI+ + +       N ++ +   +    + +  KSDL +  T+E   
Sbjct: 232 GVDKAKDYAKDADLIIYVVDASRALDENDEQILEMIREKQALILLNKSDLDTVITKE--- 288

Query: 342 LISSFTGEGLEEL-------INKIKSILSNKF--KKLPFS---IPSHKRHLYHLSQTVRY 389
           L+  +T + + E+       I K++  L   F   K+ F+     ++ R    L      
Sbjct: 289 LLQKYTEKPMIEISAKQEHGIEKVEHALKEMFFEGKVSFNDEVYITNIRQKTALQNAYDS 348

Query: 390 LE--MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LE  + S+ E +   D  + +L  A  +LG ITG    E L++ IFSKFC+GK
Sbjct: 349 LEKVIGSI-ENNMPEDFYSIDLMDAYEALGSITGETIGEDLVNEIFSKFCMGK 400


>gi|295101869|emb|CBK99414.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii L2-6]
          Length = 455

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 135/463 (29%), Positives = 234/463 (50%), Gaps = 31/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M H   TI A++T      I+I+RLSGP  ++V   + +   P  + A  + +  + G  
Sbjct: 1   MQHS--TIAAIATAPGAGGIAIVRLSGPESYEVAAKVLRPANPAKKVADAKGYTAMFGAF 58

Query: 61  L------DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
           +      D+G+ + F +P S+TGED  E   HGG AV   ++E          A   E++
Sbjct: 59  VEGEEAFDEGVALFFRAPHSYTGEDVVELSCHGGSAVARRLVEACIAAGASPAAPG-EYT 117

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAF NGK+ L +AE++ D+IS++      L+   ++G L+       D LT +++ + A
Sbjct: 118 RRAFLNGKLSLTQAEAVMDIISADGRQGAALANASLNGALARKTAAQKDALTALQAHLAA 177

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF EE DV   S   +   +  ++ ++ + I     G ++R G    I+G  NAGKS+
Sbjct: 178 WVDFPEE-DVPELSQSHLCEVLGGVEQELDALIRSYDAGAVLREGVDCAIVGKPNAGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N LA  D AIVT + GTTRDV+   + L    + + DTAG+R+T+D +E EGI+R++ 
Sbjct: 237 LLNLLAGFDRAIVTPVAGTTRDVVEQAVQLGDVRLNLFDTAGLRQTEDEIEAEGIRRSWK 296

Query: 295 EVENADLILLL---KEINSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           +++ A LIL +    E  +++++   +       I +  K D  + +  E   LI+ +  
Sbjct: 297 KLDEAGLILAVFDGSERPTREDLELAQRCAGRPAIALVNKEDKPTRFDAE---LIAPYFA 353

Query: 349 ---------EGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
                    EG  ++I    + L  +N+      S+ S +R L   ++    +  A    
Sbjct: 354 MVLPVCCQEEGARKVIAAAVARLLGTNQIDPHAASL-SGQRQLSAATRAREAVAGALDAA 412

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  GLD ++  +  A  +L ++TG    E +++ +F +FC+GK
Sbjct: 413 QGLGLDAVSVCVDDALDALCELTGENASEAVINEVFERFCVGK 455


>gi|315453615|ref|YP_004073885.1| putative thiophene and furan oxidation protein [Helicobacter felis
           ATCC 49179]
 gi|315132667|emb|CBY83295.1| putative thiophene and furan oxidation protein [Helicobacter felis
           ATCC 49179]
          Length = 457

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 141/473 (29%), Positives = 234/473 (49%), Gaps = 54/473 (11%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
           N    TI A++T    +AISII++SGP    +   +  K    PR+A+L   +   G +L
Sbjct: 5   NPNPSTIAAIATSPGRAAISIIKISGPDSLAILRALTHKLDFSPRRATLVCIYDQQGDLL 64

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L + F +P S+TGED  E   HGG+ V   IL+   +     LA  GEFS+RAF NG
Sbjct: 65  DQSLALYFKAPHSYTGEDVVEIQCHGGVVVAKLILQACLQ-AGASLAQGGEFSKRAFLNG 123

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI-------EA 174
           ++D  + ++L  L+ + +    +     + GEL        D +TH R  I       EA
Sbjct: 124 RMDFSQIQALGTLLEANSARMVKAMARQLKGELR-------DFVTHTRHDILALLASSEA 176

Query: 175 DLDFSEEE---DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN----GYKIVILGH 227
            +D++EE+   D+      ++   +  L+N +          ++ RN    GY + ++G 
Sbjct: 177 LIDYAEEDLPLDLYPRMHAQLQAILAKLENTL----------DVSRNARIEGYCLGLVGK 226

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKSSL NAL  KD A+V+ I GTTRD +   L+L+G  +K+ DTAGIR   D +E+ 
Sbjct: 227 PNVGKSSLLNALLLKDRALVSSIAGTTRDTIEEYLELQGISLKLIDTAGIRTAQDAIEQL 286

Query: 288 GIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFIFIGTKSDLYSTY-T 336
           GI ++   ++ +D++L + ++++  E          +   KNI  +F   KSD  +   T
Sbjct: 287 GIAKSLKSLQESDIVLAIFDLSTPLESQDRQVIALLLEHAKNIIVVF--NKSDCPAQLDT 344

Query: 337 EEYDHLIS-------SFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTV 387
           +E  +L+        + +       +  ++  L+   +  P    I +       L  T+
Sbjct: 345 QEVLNLLQGKFSSALTLSTTNPTHCLQSLRQALTPLLEDNPHDTLICASLAQQQALESTI 404

Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  A        L++ + +L+ A  SL  IT   +VE++LD +FS+FC+GK
Sbjct: 405 SHLNHAQSLLATQELELFSYHLQDALNSLATITQPYNVEEMLDSMFSQFCLGK 457


>gi|325663376|ref|ZP_08151826.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470830|gb|EGC74060.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 400

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 141/413 (34%), Positives = 221/413 (53%), Gaps = 41/413 (9%)

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
           +DG   +D+ L+++   P S+TGED+ E   HGG+ V+  ILE + K    R A PGEF+
Sbjct: 1   MDGEETIDEVLVLLMRGPHSYTGEDTVEIDCHGGVYVMKRILETVIKY-GARPAEPGEFT 59

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR----- 169
           +RAF NG++DL +AE++ D+I S+ E         +   +S L G  ++K++ IR     
Sbjct: 60  KRAFLNGRLDLSQAEAVIDVIQSKNEY-------ALKSSVSQLKGSVLEKISEIRKEILY 112

Query: 170 --SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
             +FIE  LD  E   +  +  K +   +  L+  I   +     G II+ G + VI+G 
Sbjct: 113 HTAFIETALDDPEHISIDGYGEK-LQGTVEKLQGAIRRLLESADNGRIIKEGIQTVIVGK 171

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL N LA K+ AIVTDI GTTRD+L  ++ + G  + I DTAGIR+T+DIVEK 
Sbjct: 172 PNAGKSSLLNVLAGKERAIVTDIEGTTRDILEENIQINGISLNIIDTAGIRDTEDIVEKI 231

Query: 288 GIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           G+ +     ++ADL++ + +       N ++ +   +    + +  KSDL +  T+E   
Sbjct: 232 GVDKAKDYAKDADLVIYVVDASRALDENDEQILEMIREKQALILLNKSDLDTVITKE--- 288

Query: 342 LISSFTGEGLEEL-------INKIKSILSNKF--KKLPFS---IPSHKRHLYHLSQTVRY 389
           L+  +T + + E+       I K++  L   F   K+ F+     ++ R    L      
Sbjct: 289 LLQKYTEKPMIEISAKQEHGIEKVEHALKEMFFEGKVSFNDEVYITNIRQKTALQNAYDS 348

Query: 390 LE--MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LE  + S+ E +   D  + +L  A  +LG ITG    E L++ IFSKFC+GK
Sbjct: 349 LEKVIGSI-ENNMPEDFYSIDLMDAYEALGSITGETIGEDLVNEIFSKFCMGK 400


>gi|56807533|ref|ZP_00365460.1| COG0486: Predicted GTPase [Streptococcus pyogenes M49 591]
          Length = 291

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 175/291 (60%), Gaps = 7/291 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G  +D 
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+ + ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIYEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
            N L ++D AIVTDI GTTRDV+   ++++G   K+ DTAGIRETDD+VE+
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPSKLVDTAGIRETDDLVEQ 291


>gi|288802559|ref|ZP_06407998.1| tRNA modification GTPase TrmE [Prevotella melaninogenica D18]
 gi|288335087|gb|EFC73523.1| tRNA modification GTPase TrmE [Prevotella melaninogenica D18]
          Length = 462

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/452 (30%), Positives = 233/452 (51%), Gaps = 43/452 (9%)

Query: 19  AISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD--GRILDKGLLIVFPSP 72
           AI +IR+SG    +V + +      K     +  +L Y   LD  G  +D  L+ VF +P
Sbjct: 24  AIGVIRVSGEKAIEVTDKVFHGVRGKHLTDAKGNTLHYGEILDKEGNTIDDVLVSVFRAP 83

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            S+TGE+S E   HG   ++N +++ L      R A PGE+++RA+ NGK+DL +AE++A
Sbjct: 84  HSYTGENSTEISCHGSAYILNQVVKALIN-AGCRQAQPGEYTQRAYLNGKMDLSQAEAVA 142

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI++      ++++  + G  SS      ++L  + S +E +LDFS+ E+++     E+
Sbjct: 143 DLIAASNRATHQVALSQLKGHFSSELSLLREQLLKMTSLLELELDFSDHEELEFADRTEL 202

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
                 +   I       + G+ ++ G  + I+G +N GKS+L N L  ++ AIV+DI G
Sbjct: 203 KALAETIHQKIKLLTDSFETGKALKKGVPVAIVGKTNVGKSTLLNCLLHEEKAIVSDIHG 262

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL------- 305
           TTRDV+    +++G   +  DTAGIR TDD +EK GI+R + +++ A ++L +       
Sbjct: 263 TTRDVIEDTTEIKGVTFRFIDTAGIRHTDDQIEKLGIERAYQKMDEAAIVLWVIDEQPTA 322

Query: 306 KEINSKKEISFPKNIDFIF--IGTKS--------DLYSTYTEEYDHLISSFTGE---GLE 352
           +E    + ++  K++  IF  I +K+        DL++ Y       IS+   +    LE
Sbjct: 323 EECTEMQRLTQGKHLITIFNKIDSKAVEPKQVDNDLHTVY-------ISAKLKQNIKALE 375

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGL--DIIAENL 409
           E I +   I       +  +   H   L H  +++ R +E       D GL  D+++E+L
Sbjct: 376 EAIYEAADIPEISENSVIITSARHYEALTHADESILRVIEAL-----DFGLSGDLVSEDL 430

Query: 410 RLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
           R+    L  ITG  +   ++L  IF  FCIGK
Sbjct: 431 RICLHQLADITGGQITPHEVLGNIFKHFCIGK 462


>gi|261415134|ref|YP_003248817.1| tRNA modification GTPase TrmE [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371590|gb|ACX74335.1| tRNA modification GTPase TrmE [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326526|gb|ADL25727.1| tRNA modification GTPase TrmE [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 460

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 239/465 (51%), Gaps = 34/465 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK---KKPFPRKASL------RYFF 54
           + +TI A  T A  SA++ IR+SG    +V   +  +   K   PR+A L      R   
Sbjct: 2   DSQTIVAPMTPAGVSAVAAIRVSGSKVREVVRLLFGESAIKNLKPREAKLATARDYRTMV 61

Query: 55  GLD---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
           G D     ++D  L I F  P S+TGED  E + HG   +V  +++ +  +  +RLA PG
Sbjct: 62  GEDRATALVIDSLLYIFFEGPNSYTGEDVLELYPHGNPIIVRELIQVIKSVDGVRLAEPG 121

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           E++RRAF NG++DL++AES+AD+I S    + + +   + G LS       + +  I + 
Sbjct: 122 EYTRRAFLNGRMDLVQAESVADVIHSANRDELKNAHRLLGGALSKKVKTLTELVMDISAR 181

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           +E D+DFSEEE   ++++  V   I  ++  + S +   K    +      V+ G  NAG
Sbjct: 182 LELDVDFSEEEADPDYATWGV--KISAIRESVESILKSFKGKAAVSRLPLAVLYGAPNAG 239

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RETD--DIVEKE 287
           KSSL NAL  +D  +V++IPGTTRD + + L L+G  +++ DTAGI  + TD  D +  E
Sbjct: 240 KSSLVNALLGEDRILVSNIPGTTRDFVEVRLFLDGGEIRLVDTAGIADKATDALDALSME 299

Query: 288 GIKRTFLEVENADLILLLKE--INSKKEISFPKN----IDFIFIGTKSDLYSTYTEEYDH 341
             K    E   AD+ +L+ +  ++       P+N     D + I +KSDL     E  D 
Sbjct: 300 KSKEILAE---ADMKILVVDGSLDENCASCHPENGAAQPDIVVI-SKSDLLDERRETRDE 355

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SL 395
                 ISS TGEGL EL   + + L  K +       + +R    L + +  ++ A +L
Sbjct: 356 RGESIRISSKTGEGLAELKRAMNAALFKKMENSEDLWITSEREKTCLEEALAGIDRALNL 415

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +  ++++A  ++L   SL  ITG +  E +L  IF+ FCIGK
Sbjct: 416 IRTNPAVELLAFEMQLVRRSLQSITGEISSEDVLQQIFAGFCIGK 460


>gi|218885988|ref|YP_002435309.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756942|gb|ACL07841.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 478

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 145/482 (30%), Positives = 232/482 (48%), Gaps = 49/482 (10%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI-- 60
            ++ TI A++T      + IIR+SGP    +   +     P  R A  R +    GR   
Sbjct: 2   RQEGTIAAIATPPGHGGVGIIRISGPDSHAILGRLFLPASP--RFAGFRPWTLHRGRACD 59

Query: 61  -----LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
                LD  L +  P P +FTGED AE H HGG AV+  +LE        RLA  GEF+R
Sbjct: 60  AMGAPLDDVLAVAMPGPRTFTGEDVAEIHCHGGPAVLAAVLEAACAC-GARLAGRGEFTR 118

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++A++I++  +   RL+   + G L +   +   +L  +R+ +   
Sbjct: 119 RAFLNGRMDLTQAEAVAEMIAAPAQGGLRLAQARLQGLLGTRVAELRARLLDLRAQLCVA 178

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF E+E V   + +  + +   +   +   +S  + G   + G  +V+ GH NAGKSSL
Sbjct: 179 VDFPEDE-VDCLAPEAFVAECDAVAAGVRGLLSAHERGRCWQEGALVVLAGHVNAGKSSL 237

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  +  AIVTD+PGTTRD +   + L G  V++ DTAG+R+T DIVE+EG++ +   
Sbjct: 238 MNALLGRRRAIVTDMPGTTRDFIEEPVQLAGLPVRLVDTAGLRDTGDIVEQEGVRISRDL 297

Query: 296 VENADLILLL-----------KEI-----NSKKEISFPKNID--FIFIGTKSDLYSTYTE 337
           V  ADL+LL+           +E+     +   ++  P       + +  K+DL +  + 
Sbjct: 298 VAQADLVLLVVDAAAGLGHAERELLRHVRDQHAQVGRPGRPGGRVLVVLNKTDLAAEASA 357

Query: 338 EYDH----------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
            +             +S+  G G++EL    ++++                 L    +  
Sbjct: 358 AFRCPTEVEGCPCVAVSALRGLGVDELAAAARAMVLAGLGGDDAGGEPESGDLAPNLRQA 417

Query: 388 RYLEMASLNEKDC---------GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
           + L  A L+E D            D+ +  L  A   L +ITG     ++L+ IFS FCI
Sbjct: 418 QVLRRA-LDELDALVADVRAGVPYDLCSVRLDGACAVLSEITGETTPAEVLEHIFSSFCI 476

Query: 439 GK 440
           GK
Sbjct: 477 GK 478


>gi|302346393|ref|YP_003814691.1| tRNA modification GTPase TrmE [Prevotella melaninogenica ATCC
           25845]
 gi|302151216|gb|ADK97477.1| tRNA modification GTPase TrmE [Prevotella melaninogenica ATCC
           25845]
          Length = 462

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 230/447 (51%), Gaps = 33/447 (7%)

Query: 19  AISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD--GRILDKGLLIVFPSP 72
           AI +IR+SG    +V + +      K     +  +L Y   LD  G+ +D  L+ VF +P
Sbjct: 24  AIGVIRVSGEKAIEVTDKVFHGVRGKHLTDAKGNTLHYGEILDKEGKTIDDVLVSVFRAP 83

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            S+TGE+S E   HG   ++N +++ L      R A PGE+++RA+ NGK+DL +AE++A
Sbjct: 84  HSYTGENSTEISCHGSAYILNQVVKALID-AGCRQAQPGEYTQRAYVNGKMDLSQAEAVA 142

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI++      ++++  + G  SS      ++L  + S +E +LDFS+ E+++     E+
Sbjct: 143 DLIAASNRATHQVALSQLKGHFSSELSLLREQLLKMTSLLELELDFSDHEELEFADRTEL 202

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
                 +   I       + G+ ++ G  + I+G +N GKS+L N L  ++ AIV+DI G
Sbjct: 203 KALAETIHQKIKLLTDSFETGKALKKGVPVAIVGKTNVGKSTLLNCLLHEEKAIVSDIHG 262

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-LLKEINSK 311
           TTRDV+    +++G   +  DTAGIR TDD +EK GI+R + +++ A ++L ++ E  + 
Sbjct: 263 TTRDVIEDTTEIKGVTFRFIDTAGIRHTDDQIEKLGIERAYQKMDEAAIVLWVIDEQPTA 322

Query: 312 KEIS----FPKNIDFIFIGTKSDLYSTYTEEY---DHLISSFTG-------EGLEELINK 357
           +E +      K    I I  K D  S  TE     D L + F         + LEE I +
Sbjct: 323 EECAEMQRLAKGKHLIAIFNKID--SKETERKLLNDELPTIFISAKLKQNIKALEEAIYE 380

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGL--DIIAENLRLASV 414
              I       +  +   H   L H  +++ R +E       D GL  D+++E+LR+   
Sbjct: 381 AADIPEISENSVIITSARHYEALTHADESILRVIEAL-----DFGLSGDLVSEDLRICLH 435

Query: 415 SLGKITGC-VDVEQLLDIIFSKFCIGK 440
            L  ITG  +   ++L  IF  FCIGK
Sbjct: 436 QLADITGGQITPHEVLGNIFKHFCIGK 462


>gi|225678567|gb|EEH16851.1| tRNA modification GTPase mss1 [Paracoccidioides brasiliensis Pb03]
          Length = 478

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 141/478 (29%), Positives = 228/478 (47%), Gaps = 107/478 (22%)

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-----------NLRLANPGEF 113
           +++ FP+P++ TGED  E HVHGG AVV  +L  + +             ++R A PGEF
Sbjct: 1   MVLYFPAPKTVTGEDLLELHVHGGPAVVKAVLNAIPRCTKVDFTGSNFPLSIRYAEPGEF 60

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N ++ L + E+L + +S+ETE QRRL++ G S  L++ Y +W  +L + R  +E
Sbjct: 61  TRRAFLNDRLSLPQIEALGNTLSAETEQQRRLAVRGTSDALATRYERWHQQLLYARGEME 120

Query: 174 ADLDFSEEEDVQNFSSKEVL---NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           A +DFSE++     + + VL   ++I  L   I+ H+     GE++RNG K+ +LG  NA
Sbjct: 121 ALIDFSEDQHFDESAEEFVLSVTDEIRNLVRQINLHVENASKGELLRNGIKVALLGAPNA 180

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD-------- 282
           GKSSL N +  ++ AIV+   GTTRD++ + +D+ G+  K  D AG+R            
Sbjct: 181 GKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGFFCKFGDMAGLRPDHSAQAGQMPP 240

Query: 283 --IVEKEGIKRTFLEVENADLILL---LKEINSKKE----------------ISFPKNI- 320
              VEKEGI+R       +D++++   ++E +   E                ++  KN+ 
Sbjct: 241 IGAVEKEGIRRAKARALESDVVIVVLSVEECDGGTEAKLVLEPEVVDAVRSCLTLGKNVI 300

Query: 321 -----------DFIFIGTKSDLYSTYTEE----YDH-------LISSFTGE--------- 349
                        I  GT+ + +     E    + H       LIS    E         
Sbjct: 301 VAVNKADKCTTSMITAGTREEFFGRLAREIRSKFPHVAQDQIILISCREAENEQSETPDP 360

Query: 350 --------GLEELINKIKSIL-----SNKFKKLPF--SIPSHKRHLYHLSQTVRYL---- 390
                   GL  +  KI +        ++F +L +  S+    R   +L + V++L    
Sbjct: 361 GNIQILLGGLVRIFKKISTPAELENEGDQFDQLYWQDSLGVTHRQSSNLQKCVQHLNDFL 420

Query: 391 ---EMASLNEKDC-----GLDII--AENLRLASVSLGKITG---CVDVEQLLDIIFSK 435
              E    N ++       +DI+  AE+LR A+  L KITG     DVE +L ++F K
Sbjct: 421 SQTEQTPENAENAEQIELNIDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVVFEK 478


>gi|167999799|ref|XP_001752604.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696135|gb|EDQ82475.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 481

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 142/489 (29%), Positives = 240/489 (49%), Gaps = 71/489 (14%)

Query: 14  GALPSAISIIRLSGPSCFQVCEFICKKKKPF-------------PRKASLRYFFGLD--G 58
           G    A++I+RLSG S  ++   + +  K               P+   ++Y   +D  G
Sbjct: 2   GGQQGAVAIVRLSGNSAVKIVGRLFRTAKTMRNKENSHLNNEWNPKSHRVQYGNLIDASG 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L++   +P S+T ED  E   HGG   V  +L+ L      RLA PGEF+ RAF
Sbjct: 62  TLVDEVLVLPMLAPRSYTREDVVELQCHGGDVCVRRVLQ-LCLEAGARLAQPGEFTLRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS----SLYGQWIDKLTHIRSFIEA 174
            NG++DL +AES+A L++++T +  + ++ G+ G LS    SL  + ID L  +    EA
Sbjct: 121 LNGRLDLAQAESVAQLVAAKTSVAAQSALAGIQGGLSAFVQSLRMECIDLLVEM----EA 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LDF +E  + N     ++  I  +   +   ++    G ++++G ++ I+G  N GKSS
Sbjct: 177 RLDFDDE--MPNLDINALITRIETMCQRLQQALATAGRGRLLQSGLQVAIVGRPNVGKSS 234

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NA ++ + AIVTDIPGTTRD++   + + G  V + DTAGIR+T D+VEK G++R+  
Sbjct: 235 LLNAWSQSERAIVTDIPGTTRDIVEARMVVGGIAVNLLDTAGIRDTADLVEKIGVERSEA 294

Query: 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE- 353
             + AD+I+++  I++    +    I F  I     +     E+         G G  + 
Sbjct: 295 VAKAADVIVMV--ISASDGWTPADEIIFQRIWGTDGILRQRKEQTGGECEDQPGSGSVQT 352

Query: 354 ----LINKIKSI----------LSNKF--------------KKLPFSI----------PS 375
               ++NK+             + N F              ++L F+I            
Sbjct: 353 PSLLVVNKVDRAAAGSVILPQEVQNAFFKRVATCATQGVGLQELDFAILDLVGLGHVSSE 412

Query: 376 HKRHLYHLSQTVRYLE----MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
            ++      Q VR  E    +    + D  LD+   +L+ A+++LG+I+G    E++L  
Sbjct: 413 GQQWARQAEQLVRAQEALRRVVESVQLDIPLDMWTIDLKEAAIALGEISGDDVSEEVLTN 472

Query: 432 IFSKFCIGK 440
           IF++FCIGK
Sbjct: 473 IFNRFCIGK 481


>gi|315638574|ref|ZP_07893748.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis JV21]
 gi|315481198|gb|EFU71828.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis JV21]
          Length = 442

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 154/473 (32%), Positives = 237/473 (50%), Gaps = 71/473 (15%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISIIR+SG    ++   +  K +  PR A     F  +   +D+ +
Sbjct: 3   DTIAALATAYGTGSISIIRVSGSRALELGLKLSHKDELSPRYAYFVKLFNDENVFIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF +HGG +V   +L+EL K  ++RLA  GEFS+RA  NGK+  
Sbjct: 63  MIYFKAPFSFTGEDVVEFQIHGGFSVSEILLDELLK-NDVRLAKAGEFSKRACLNGKMSA 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           L+A ++ DLIS+++    ++    M G L++L  +    L    +F+E  +D+++++   
Sbjct: 122 LKALNIQDLISAKSAKSAKIIARNMQGTLANLIEKIRLDLIKSLAFVETSIDYADDDLPS 181

Query: 186 NFSSK---------EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +   +          +L +I  L        SQ K  + +  G+KI I+G  NAGKSSL 
Sbjct: 182 DLMEQIRMMCEENARILEEIYTL--------SQSK--KALLEGFKIAIIGKPNAGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + AIV+ + GTTRD +   L +  +LVKI DTAGIRE+++ +EK GI+ +   +
Sbjct: 232 NALLAYERAIVSPLAGTTRDFIEESLKIGTHLVKIMDTAGIRESEEELEKIGIELSKKSL 291

Query: 297 ENADLILLL-----------KEI-----NSKKEISFPKN-------------IDFIFIGT 327
             AD+IL L           KEI     NS+K++ +  N             ID I I  
Sbjct: 292 NEADIILALFDSSREFDEEDKEILNLLKNSEKKVFYLLNKCDLKPQFENLNEIDLIKISA 351

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
           K D+     +  +  ++S   EG   L++ +  I  N  KK   +I   K  L       
Sbjct: 352 KEDIM-PLKKALESYLNSLDSEGF--LVSSLDFI--NACKKASEAIQRAKTLLDE----- 401

Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R LE+             A  L +A   L K T     E++LD +FS FC+GK
Sbjct: 402 RVLEL------------FAFELNVAIEELAKFTKDFKREEILDEMFSNFCLGK 442


>gi|218781965|ref|YP_002433283.1| tRNA modification GTPase TrmE [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763349|gb|ACL05815.1| tRNA modification GTPase TrmE [Desulfatibacillum alkenivorans
           AK-01]
          Length = 463

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 144/469 (30%), Positives = 235/469 (50%), Gaps = 48/469 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP----FPRKASLRYFFGLDGRIL 61
           +TI A++T      I +IR+SGP    + + I +        +P +A    +  + G+I+
Sbjct: 9   QTIAAIATPPGVGGIGVIRISGPLSSSILKSIFQPAHSSFDIWPPQA----YKLIRGKIV 64

Query: 62  DKG--------LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           D          L +  P P ++TGED AE   HGG  V++ +LE +      RLA PGEF
Sbjct: 65  DPKTTAVKDEVLAVFMPGPGTYTGEDVAEIQGHGGPVVLSAVLETVLSQ-GARLAEPGEF 123

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF NG++DL +AE++ DLI + T    + +   + G L S     +D +   R+ IE
Sbjct: 124 TRRAFLNGRMDLSQAEAVVDLIHARTSRAAKTAAAHVGGALKSRVEGILDSIMECRAQIE 183

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSN 229
           A LDFS+  D  +  +K +L     L   + S + +     +LG+    G +  I+G  N
Sbjct: 184 AALDFSD--DTGDGETKWILAK---LDQGVISPLKELAEAAELGKAHMEGLRAAIVGRPN 238

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKSSL NALA ++ +IVT+ PG TRDV+   + + G    +SDTAG+R + D VE  G+
Sbjct: 239 VGKSSLMNALAGQERSIVTETPGATRDVIREPVLIRGLHFTLSDTAGLRTSSDAVEMIGV 298

Query: 290 KRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKSDLYSTY--- 335
           +R    +  +DL++L+ E  S  ++S P++ +            + +  K DL+  +   
Sbjct: 299 QRAKDAMGESDLVMLVVEAGS--DLS-PEDQELLHQAEHSCNRVLMVYNKMDLHPGFIPS 355

Query: 336 -TEEYDHL-ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
              +Y  + +S+ TG+GL+ L   +++ L    +    P  IP + R    L   +    
Sbjct: 356 PVRDYAPVAVSAKTGQGLDGLRRAMENSLRQGRELDAAPGIIP-NLRQKGALESALESAT 414

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A     +   ++ A ++  A  SL ++ G      +LD IFS FCIGK
Sbjct: 415 EARSRILEEAWELAAFDMEEAQKSLEQVLGLGVSPDILDRIFSDFCIGK 463


>gi|12044858|ref|NP_072668.1| tRNA modification GTPase TrmE [Mycoplasma genitalium G37]
 gi|1351237|sp|P47254|MNME_MYCGE RecName: Full=tRNA modification GTPase mnmE
 gi|1045676|gb|AAC71224.1| tRNA modification GTPase TrmE [Mycoplasma genitalium G37]
 gi|166078782|gb|ABY79400.1| tRNA modification GTPase TrmE [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 442

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 138/445 (31%), Positives = 232/445 (52%), Gaps = 19/445 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRYFFGLDGRILDK 63
            IFA++T    SA+ IIR SGP  +++   I  KK    RK       +    + + +D 
Sbjct: 6   NIFALATAPFNSALHIIRFSGPDVYEILNKITNKK--ITRKGMQIQRTWIVDENNKRIDD 63

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            LL  F SP S+TGED  E   HG + +VN I   L K   +  A PGEF++R+F NGK+
Sbjct: 64  VLLFKFVSPNSYTGEDLIEISCHGNMLIVNEICALLLKKGGV-YAKPGEFTQRSFLNGKM 122

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
            L +A ++  LI S   + + + +  ++GE+     Q   ++  +   +E ++D+ E  D
Sbjct: 123 SLQQASAVNKLILSPNLLVKDIVLNNLAGEMDQQLEQIAQQVNQLVMQMEVNIDYPEYLD 182

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
            Q      + N +  +   +   I   K  + + + +KI I+G +N GKSSL NAL  +D
Sbjct: 183 EQ-VELSTLNNKVKLIIEKLKRIIENSKQLKKLHDPFKIAIIGETNVGKSSLLNALLNQD 241

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV++I G+TRDV+  D +L GYL+KI DTAGIR+    +EK GIK++F  ++ A+L++
Sbjct: 242 KAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKHKSGLEKAGIKKSFESIKQANLVI 301

Query: 304 -LLKEINSKKEISF-----PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            LL   + KK++           DF     K DL    T ++++ IS+   + ++EL++ 
Sbjct: 302 YLLDATHPKKDLELISFFKKNKKDFFVFYNKKDL---ITNKFENSISA-KQKDIKELVDL 357

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLRLASVS 415
           +   ++  +KK+   I   +     L + ++    +     +K    D++  +LR A   
Sbjct: 358 LTKYINEFYKKIDQKIYLIENWQQILIEKIKEQLEQFLKQQKKYLFFDVLVTHLREAQQD 417

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           + K+ G      L++ IF+ FC+GK
Sbjct: 418 ILKLLGKDVGFDLVNEIFNNFCLGK 442


>gi|283853590|ref|ZP_06370827.1| tRNA modification GTPase TrmE [Desulfovibrio sp. FW1012B]
 gi|283571015|gb|EFC19038.1| tRNA modification GTPase TrmE [Desulfovibrio sp. FW1012B]
          Length = 466

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 228/462 (49%), Gaps = 32/462 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-------GLDG 58
           +TI AV+T      + I+R+SGP    V   +     P P  + LR +           G
Sbjct: 10  DTIAAVATPPGRGGVGIVRVSGPQSRLVASRLFLS--PRPGFSGLRPYILHHGSLRAPSG 67

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           RI+D+ +    P P S+TGED+ EF  HG  AV+  +L         R A PGEF+RRA+
Sbjct: 68  RIIDEAMAAYMPGPGSYTGEDTVEFFCHGSPAVLRAVLAAAFAY-GARPAGPGEFTRRAY 126

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++A+L+++  + Q  +++  +SG +     +    L  +R+ +   +DF
Sbjct: 127 VNGRLDLSQAEAVAELVAARGDAQADMALVRLSGGMGQAARELGLALDDLRASVCLAVDF 186

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            ++E V+    K     +  + + + + ++  +     R G ++ + G  NAGKSSLFNA
Sbjct: 187 PDDE-VECLPKKSFGAGVSAVIDRVETLLAAHRRARPFREGARVALFGRVNAGKSSLFNA 245

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L   D A+V D+PGTTRD L   LDL+G  V ++DTAG+R+T D VE+ G  R       
Sbjct: 246 LLGTDRALVADVPGTTRDYLEEGLDLDGLPVNLTDTAGLRQTLDAVEQAGKARGLALAGT 305

Query: 299 ADLILLLKEIN-------SKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHL-------- 342
           A L L + + +         +E+      D +  +  K+DL +      D L        
Sbjct: 306 AALGLYVVDGSVPFAPDAEAEELVAALGPDRVLGVVAKADLPAATPAPGDILAIRGLESV 365

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLP---FSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            +S+ TG GL  L+  I++ L+     LP      PS +     ++     L +      
Sbjct: 366 AVSARTGHGLAGLLTAIRTRLTRD-AGLPEPETPAPSDREAACLVATRDELLALLGDIRD 424

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D   D++   L  AS++L  ITG    + +L+ +FSKFCIGK
Sbjct: 425 DLPYDLLGVRLEAASLALADITGETSADDVLNAVFSKFCIGK 466


>gi|313892276|ref|ZP_07825869.1| tRNA modification GTPase TrmE [Dialister microaerophilus UPII
           345-E]
 gi|313119414|gb|EFR42613.1| tRNA modification GTPase TrmE [Dialister microaerophilus UPII
           345-E]
          Length = 459

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 148/469 (31%), Positives = 247/469 (52%), Gaps = 42/469 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---D 57
           +E+ TI A++TG+    I IIR+SG S   + E  F  KK   F      + +FG    D
Sbjct: 2   YEETTIAAIATGSGEGGIGIIRISGISACDIAERVFYTKKLNTFKDAIPYKMYFGYVKRD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+GL +   +P S+TGED  E  +HG    +   LE L       +A  GEF++RA
Sbjct: 62  EKKIDEGLAVYMKAPHSYTGEDVVEIQIHGSQEALRQTLE-LVLEKGATIAERGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ D+I ++  +    +   +SG LS    +  +K+  + + +E  +D
Sbjct: 121 FLNGRLDLTQAEAVMDIIEAKNAVALTQAESHLSGALSKFVHENREKMKDLITKLEVTID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + +E D+++ +  E+  ++  ++  + + +   K G II++G +  I+G  NAGKSSL N
Sbjct: 181 YPDE-DLKDLTRHEMETELSEIEKTLYALLETSKKGRIIKDGIRTAIVGKPNAGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDIPGTTRD +   + L G  + + DTAGIR+T++ VEK GI+R    +E
Sbjct: 240 TLLQEERAIVTDIPGTTRDTIEESISLSGIPLILMDTAGIRKTENKVEKIGIERARESME 299

Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
            ADL+L               LL+EI+ +K +      D     TK  + S Y ++   L
Sbjct: 300 KADLVLMVIDSSKELEESDKKLLEEISKRKAVVLLNKSDLEKKTTKETV-SKYAKDLPVL 358

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFS-----IPSHKRHLYHLSQT----VRYLEM 392
            IS+    G+    NK++ +L +  K            ++ RH+  + +     +R  E 
Sbjct: 359 EISAKNKTGM----NKLEKVLEDYVKTGDIEDGRALFLTNLRHIDLVKKAYESVIRAKES 414

Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L    DC +  + E+  +    LG+ITG    ++L++ IFS+FC+GK
Sbjct: 415 LQLYMPADCIVVDLTESWNI----LGEITGDTVDDELINSIFSRFCVGK 459


>gi|329121701|ref|ZP_08250318.1| tRNA modification GTPase TrmE [Dialister micraerophilus DSM 19965]
 gi|327468171|gb|EGF13657.1| tRNA modification GTPase TrmE [Dialister micraerophilus DSM 19965]
          Length = 459

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 149/469 (31%), Positives = 246/469 (52%), Gaps = 42/469 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---D 57
           +E+ TI A++TG+    I IIR+SG S   + E  F  KK   F      + +FG    D
Sbjct: 2   YEETTIAAIATGSGEGGIGIIRISGISACDIAERVFYTKKLNTFKDAIPYKMYFGYVKRD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+GL +   +P S+TGED  E  +HG    +   LE L       +A  GEF++RA
Sbjct: 62  ETKIDEGLAVYMKAPHSYTGEDVVEIQIHGSQEALRQTLE-LVLEKGATIAERGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ D+I ++  +    +   +SG LS    +  +K+  + + +E  +D
Sbjct: 121 FLNGRLDLTQAEAVMDIIEAKNAVALTQAESHLSGALSKFVHENREKMKDLITKLEVTID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + +E D+++ +  E+  ++  ++  + S +   K G II++G +  I+G  NAGKSSL N
Sbjct: 181 YPDE-DLKDLTRHEMETELSEIEKTLYSLLETSKKGRIIKDGIRTAIVGKPNAGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDIPGTTRD +   + L G  + + DTAGIR+T++ VEK GI+R    +E
Sbjct: 240 TLLQEERAIVTDIPGTTRDTIEESISLSGIPLILMDTAGIRKTENKVEKIGIERARESME 299

Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
            ADL+L               LL+EI+ +K +      D     TK  + S Y ++   L
Sbjct: 300 KADLVLMVIDSSKELEESDKKLLEEISKRKAVVLLNKSDLEKKTTKETV-SKYAKDLPVL 358

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFS-----IPSHKRHLYHLSQT----VRYLEM 392
            IS+    G+    NK++ +L +  K            ++ RH+  + +     +R  E 
Sbjct: 359 EISAKNKTGM----NKLEKVLEDYVKTGDIEDGRALFLTNLRHIDLVKKAYESVIRAKES 414

Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L    DC +  + E+  +    LG+ITG    ++L++ IFS+FC+GK
Sbjct: 415 LQLYMPADCIVVDLTESWNI----LGEITGDTVDDELINSIFSRFCVGK 459


>gi|57242376|ref|ZP_00370315.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis RM3195]
 gi|57017056|gb|EAL53838.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis RM3195]
          Length = 442

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 153/473 (32%), Positives = 236/473 (49%), Gaps = 71/473 (15%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     +ISIIR+SG    ++   +  K +  PR A     F  +   +D+ +
Sbjct: 3   DTIAALATAYGTGSISIIRVSGSRALELGLKLSHKDELSPRYAYFVKLFNDENVFIDEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF +HGG +V   +L+EL K  ++RLA  GEFS+RA  NGK+  
Sbjct: 63  MIYFKAPFSFTGEDVVEFQIHGGFSVSEILLDELLK-NDVRLAKAGEFSKRACLNGKMSA 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           L+A ++ DLI++++    ++    M G L+ L  +    L    +F+E  +D+++++   
Sbjct: 122 LKALNIQDLINAKSAKSAKIIARNMQGTLADLIEKIRLDLIKSLAFVETSIDYADDDLPS 181

Query: 186 NFSSK---------EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +   +          +L +I  L        SQ K  + +  G+KI I+G  NAGKSSL 
Sbjct: 182 DLMEQIRMMCEENARILEEIYTL--------SQSK--KALLEGFKIAIIGKPNAGKSSLL 231

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + AIV+ + GTTRD +   L +  +LVKI DTAGIRE+++ +EK GI+ +   +
Sbjct: 232 NALLAYERAIVSPLAGTTRDFIEESLKIGTHLVKIMDTAGIRESEEELEKIGIELSKKSL 291

Query: 297 ENADLILLL-----------KEI-----NSKKEISFPKN-------------IDFIFIGT 327
             AD+IL L           KEI     NSKK++ +  N             ID I I  
Sbjct: 292 NEADIILALFDSSRKFDDEDKEILNLLRNSKKKVFYLLNKCDLKPQFENLNEIDLIKISA 351

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
           K D+ +   +  +  ++S   EG   L++ +  I  N  KK   +I   K  L       
Sbjct: 352 KEDI-APLKKALESYLNSLDSEGF--LVSSLDFI--NACKKASEAIQRAKTLLDE----- 401

Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R LE+             A    +A   L K T     E++LD +FS FC+GK
Sbjct: 402 RVLEL------------FAFEFNVAIEELAKFTKDFKREEILDEMFSNFCLGK 442


>gi|291243985|ref|XP_002741880.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 245

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 124/183 (67%), Gaps = 2/183 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFF-GLDGRILDK 63
           +TI+A+++G     I++IRLSGPS   V  E   +K+ P PR+AS+R     + G  +D+
Sbjct: 56  DTIYALASGHGKCGIAVIRLSGPSASLVLKELTGRKQLPIPRQASIRRLHDSVSGEHVDR 115

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            LL+ FP P SFTGED  EFH+HGGIAV++ +   L  +P +R A PGEF++RAF NGK+
Sbjct: 116 ALLLWFPGPNSFTGEDVCEFHIHGGIAVISALYHALDNIPGVRPAEPGEFTKRAFLNGKL 175

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E L DLI +ETE QR+ ++  M GELS LY  W D+L    + IEA +DFSE+++
Sbjct: 176 DLTEVEGLGDLIHAETEAQRKQALRQMEGELSKLYKDWKDRLVKCAANIEAYIDFSEDDN 235

Query: 184 VQN 186
           +++
Sbjct: 236 IED 238


>gi|268610510|ref|ZP_06144237.1| putative tRNA modification GTPase [Ruminococcus flavefaciens FD-1]
          Length = 453

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 137/463 (29%), Positives = 234/463 (50%), Gaps = 41/463 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDG-RIL 61
           TI AVST      +++IR+SG    ++ E + +    +K    +  +  Y    DG   +
Sbjct: 3   TIAAVSTPNAVGGLAVIRISGERAIEIAEAVFRPAGGRKVSDMKGYTCAYGDAYDGDEHI 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  +L VF +P S+TGED+AE   HGG+ V   IL  +        A  GEF++RAF NG
Sbjct: 63  DDCILTVFRAPHSYTGEDTAEISCHGGLYVSKKILRAILAH-GAENAEAGEFTKRAFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ D+IS+  E + +++     G       +  DKL  I   + A  D+ EE
Sbjct: 122 KLDLTQAEAVMDIISARGEKELKMAESLREGAAYRTARKCSDKLMKILGDLAAWADYPEE 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D+       ++ ++  +++D+S+ +     G +IR G    I+G  N GKS+LFN L+ 
Sbjct: 182 -DIPEVEPDTLMKELREVRSDLSTLVENYDSGRLIREGISTAIIGRPNVGKSTLFNCLSG 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            + +IVTDI GTTRD++   + L    +++SDTAGI +TDD++E  G+      ++ A+L
Sbjct: 241 CERSIVTDIAGTTRDIVEESVRLGDITLRLSDTAGIHDTDDVIEGIGVDMAEKMIDKAEL 300

Query: 302 IL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--IS 344
           +L               L+ +IN    I+     D   +  K D+ +  T+ + H+  IS
Sbjct: 301 VLAVFDGSCPLTEDDLYLVNKINKSNTIAVINKSD---VEQKLDI-NELTKYFIHIVYIS 356

Query: 345 SFTGEGLEELINKIKSILS---NKFKKLPFSIPSHKR----HLYHLSQTVRYLEMASLNE 397
           +    G+ +L NK++ I S     F+ +  +    K+     L  + + +  LE+  +  
Sbjct: 357 AKENSGVIDLKNKVEEIFSINEQTFENVSAANERQKKCIDSALRSIDEAISALEIGEM-- 414

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               LD +   +  A  S+  +TG    + ++D +FS+FC+GK
Sbjct: 415 ----LDAVNVIIDEAEQSILSLTGEKITDAVVDEVFSRFCVGK 453


>gi|251772739|gb|EES53301.1| tRNA modification GTPase TrmE [Leptospirillum ferrodiazotrophum]
          Length = 441

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 133/446 (29%), Positives = 222/446 (49%), Gaps = 17/446 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++I A  T  +P  + I+RLSG + +Q +         P PRKA+L       G+ +D  
Sbjct: 2   DSIVAPVTALVPQPVGILRLSGLNLWQQIQPLFPGLPCPAPRKATL-LTLKRQGQAIDSV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGED  E   HG    +  IL  + +   +R A PGEFS RA++NGKI 
Sbjct: 61  LVLFFPGPHSFTGEDVVEIQAHGNPQNIRSILHSIEEC-GIRQAKPGEFSLRAYKNGKIS 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMS----GELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           LL+AESL  +I++ T      +    S      L+++   ++D L    +F    LD+ E
Sbjct: 120 LLKAESLHRMITAPTYGDFLSAHSSFSRPENHPLATIKEAFLDLLASFYAF----LDYPE 175

Query: 181 E--EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           E  +   ++S   +   IL L++     +S  +    + + + +++ G  N+GKSSLFN 
Sbjct: 176 ELTDSEHSYSHSLLFPKILTLQHLSRHQLSLFRKNRRVFSSFSVLLAGPPNSGKSSLFNR 235

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVE 297
           L + D AIV+  PGTTRD+L   L L    + + D+AG R  ++D++E  GI +    + 
Sbjct: 236 LLQSDRAIVSPYPGTTRDLLEGRLSLPFGDLLLLDSAGFRSSSNDLIEGMGISKARKTIA 295

Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISSFTGEGLEELIN 356
           + D +L +    +   + F     +  I  K DL         D ++S+ T +GL +L++
Sbjct: 296 HVDRLLWVTSPETLAPLPFSTRTPYFTIWNKVDLSPPPPILPPDFVVSARTRKGLRQLLD 355

Query: 357 KIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
            + S+  + +     S P    +R    LS  ++ +  A  + +    D+   +L  A  
Sbjct: 356 ALVSLAEDFYSHHNNSTPLLDSERQAQALSSFLKAITRAEDSLRSNAFDLALTSLEEARN 415

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            L   TG +  E++ D +FS+FC+GK
Sbjct: 416 LLEDGTGMISTEEIYDRVFSRFCLGK 441


>gi|257437744|ref|ZP_05613499.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii A2-165]
 gi|257199759|gb|EEU98043.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii A2-165]
          Length = 456

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 169/308 (54%), Gaps = 8/308 (2%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL-- 61
           E  TI A++T      I+++RLSGP  + V   +     P  R    + +  L G  +  
Sbjct: 2   EHSTIAAIATAPGAGGIAVVRLSGPESYAVAAKVFCPANPAKRVEEAKGYTALFGHFMEG 61

Query: 62  ----DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
               D+G+ + F +P S+TGED  E   HGG AV   ++E          A   E++RRA
Sbjct: 62  EEAFDEGVALFFRAPHSYTGEDVVELSCHGGSAVARRLVESCIAAGAAPAAPG-EYTRRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+ L +AE++ DLIS++      L+   ++G L+   G   D LT +++ + A +D
Sbjct: 121 FLNGKLGLTQAEAVMDLISADGRQGAALANASLNGALAKKIGAEKDALTALQAHLTAWVD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EE DV      ++++ +  +K ++ + I     G ++R G    I+G  NAGKS+L N
Sbjct: 181 FPEE-DVPALEDAQLVSTLTAVKGELDTLIRNYDAGAVLREGVDCAIVGRPNAGKSTLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            LA  D AIVT + GTTRDV+   + L    + + DTAG+RET+D +E EGI+R++ +++
Sbjct: 240 LLAGFDRAIVTPVAGTTRDVVEQAVRLGDIRLNLFDTAGLRETEDAIEAEGIRRSWKKLD 299

Query: 298 NADLILLL 305
            A LIL +
Sbjct: 300 EAGLILAV 307


>gi|302909904|ref|XP_003050176.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256731113|gb|EEU44463.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 439

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 133/434 (30%), Positives = 206/434 (47%), Gaps = 79/434 (18%)

Query: 82  EFHVHGGIAVVNGILEELAK---MPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           E HVHGG A V  +L  + +      +R A PGEF++RAF N ++DL + ESL+D +++E
Sbjct: 10  ELHVHGGAATVKAVLSAIPRCSTAQRIRYAEPGEFTKRAFFNDRLDLAQIESLSDTLAAE 69

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE------V 192
           TE QRR ++ G SG L   Y  W ++L   R  IEA +DFSE+   Q+F   +      V
Sbjct: 70  TEQQRRAAVRGNSGALGRQYEAWREQLLLARGEIEALIDFSED---QHFDESQADLLHNV 126

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  + + I  H    +  E++RNG +I +LG  N GKSSL N +  ++ +IV+   G
Sbjct: 127 TTQVARMLHSIELHEQGSQRSELLRNGIRIALLGPPNVGKSSLMNLIVGREASIVSGEAG 186

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDD------------IVEKEGIKRTFLEVENAD 300
           TTRD++   LD+ GYL   +DTAG R                 VE+EGI+R   +  ++D
Sbjct: 187 TTRDIIEASLDIRGYLCSFADTAGFRSNGSGTINGDGGGAIGAVEEEGIRRAKQKAMDSD 246

Query: 301 LILLLKEINSKKEISF-----------PKNIDFIFIGTKSDL-----YSTYTEEYDHLIS 344
           L+++L  +      SF               D + +  K D      +    EE+   +S
Sbjct: 247 LVIVLASVEDGPGGSFLQYDEETLDLAAGAEDCLIVVNKRDAVDAGQFEKLVEEFRRTVS 306

Query: 345 ------------SFTGEGLEEL---------INKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                       S + +  + L         +  +   L   F+K+  S+P   + L  +
Sbjct: 307 EKAPKLAAAELVSISCKEAQTLGSESKDPGGVQAVMDQLVGSFEKMT-SMPVDLQDLLGV 365

Query: 384 SQTVRYLE----------MASLNEKDCGLD----IIAENLRLASVSLGKITG---CVDVE 426
           ++  R L           MA    ++ G+D    + AE LR A+  L +ITG     DVE
Sbjct: 366 TERQRQLLVKCRGHLQDFMAEATPEEEGMDADTVLAAEYLRYAADCLARITGRGEFGDVE 425

Query: 427 QLLDIIFSKFCIGK 440
            +L +IF KFC+GK
Sbjct: 426 DVLGVIFEKFCVGK 439


>gi|317133704|ref|YP_004093018.1| tRNA modification GTPase TrmE [Ethanoligenens harbinense YUAN-3]
 gi|315471683|gb|ADU28287.1| tRNA modification GTPase TrmE [Ethanoligenens harbinense YUAN-3]
          Length = 455

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 136/458 (29%), Positives = 230/458 (50%), Gaps = 29/458 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG----LDGR 59
           E I A++T      I +IRLSG   F V +  F  K  K     A     FG    +DG 
Sbjct: 4   EPIAAIATPHGTGGIGVIRLSGDGAFTVAQRVFHAKSGKALADMAGYTAAFGQVCDVDGP 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           + D+ +++VF +P+S+TGED  E   HGG  ++   L  L      RLA PGEF+RRAF 
Sbjct: 64  V-DEAVVLVFRAPKSYTGEDVVEISCHGGETILRRTLAALLAT-GARLAGPGEFTRRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           +G+IDL EAE++  LI +++    R ++    G L     Q  + L  + + + A  D+ 
Sbjct: 122 HGRIDLTEAEAVMQLIGAQSADAVRAAIAQHEGALYREIRQIKEILYQLSAELAAFFDYP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           ++ D+   + + VL  +  ++  +     Q + G ++R+G  + I+G  N GKS+L N L
Sbjct: 182 DD-DIPALTRESVLPRLAEVQEKLEKLCVQYETGRVLRDGVTVAIVGKPNVGKSTLMNRL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ +IVT+I GTTRDV+       G  + + DTAG+RETDD VE+ G+ R   ++E A
Sbjct: 241 LGEERSIVTEIAGTTRDVVEESAQFAGMTLHLFDTAGLRETDDPVERIGVARAKSKIEQA 300

Query: 300 DLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDL---------YSTYTEEYDHLIS 344
            L+ +L    + ++ + E   S  +    I I  K+DL          S + +     IS
Sbjct: 301 MLVFVLFDGSRPLDGEDESIFSMLQGKRVIAILNKADLPQRCDMARIRSVFPDMVS--IS 358

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--L 402
           +    G++ L  +++     +       + ++ R L   +   +   M S      G  L
Sbjct: 359 AAEAHGMDALETRLRDRFRLEAIDPRAGMLANARQL-DCALRAKTAVMESRQGLIAGFTL 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+++  L+ A  +L ++TG    E +++ +F++FC+GK
Sbjct: 418 DVLSVGLQTAEDALAELTGEQASEAVIEKVFAQFCVGK 455


>gi|229826871|ref|ZP_04452940.1| hypothetical protein GCWU000182_02255 [Abiotrophia defectiva ATCC
           49176]
 gi|229788489|gb|EEP24603.1| hypothetical protein GCWU000182_02255 [Abiotrophia defectiva ATCC
           49176]
          Length = 455

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 147/458 (32%), Positives = 238/458 (51%), Gaps = 28/458 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRY--FFGLDGRI 60
           +TI A+ST    S ISIIR+SG   F +   + K       K    +++Y   +   G I
Sbjct: 3   DTITAISTAVGNSGISIIRISGDEAFDIAGKLMKLSSTDVEKIKTHTIKYGHIYNEAG-I 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+     P+++T ED  E + HGG  +   +LE   K    R A PGEF++RAF +
Sbjct: 62  VDEVLVSFMKGPKTYTREDVVEINCHGGAFITKKVLETAIK-AGARPAEPGEFTKRAFLS 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I ++++   + +   ++G +        D +    ++IEA LD  E
Sbjct: 121 GRIDLTQAEAVMDIIRADSDYAIKSAGRRLNGGIGDKLKPVKDSILTDMAYIEAALDDPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              +    ++E+  +++   N +++ +     G II+ G K VI+G  N GKSS  N ++
Sbjct: 181 HMSLDG-KAEEIRENVINNINALNNILENAGKGRIIKEGIKTVIVGKPNVGKSSFLNYIS 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++VAIVTDIPGTTRD L  ++ L    + I DTAGIRETD+ +E+ GI+R    + +AD
Sbjct: 240 GEEVAIVTDIPGTTRDALLQNVSLGDISLNIVDTAGIRETDNEIERMGIERAKEHLSDAD 299

Query: 301 LILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHL-------ISSF 346
           L+L++ +++       K+ ++  K+   + I  K+DL    T EEY          IS+ 
Sbjct: 300 LVLMIIDVSKPLSTEDKELLAEIKSKKTVLILNKTDLERGLTDEEYKEFSEFNLVEISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGL-- 402
              G+E L   IK +  N   +L F+   +  +L       R  E  +  L   D G+  
Sbjct: 360 KRIGIERLTEIIKEMFFN--GELDFNNEIYLSNLRQEGAIRRAKESLNMVLESIDSGVSE 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D    +L  A  ++G++TG    E L D IF  FC+GK
Sbjct: 418 DFYTIDLMNAYNAIGEVTGDTTSEDLADKIFKDFCMGK 455


>gi|224532071|ref|ZP_03672703.1| tRNA modification GTPase TrmE [Borrelia valaisiana VS116]
 gi|224511536|gb|EEF81942.1| tRNA modification GTPase TrmE [Borrelia valaisiana VS116]
          Length = 464

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 144/467 (30%), Positives = 245/467 (52%), Gaps = 43/467 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGLD 57
           + I A++T  L SA+ +IR SG S       I K  K F   ++L         Y + LD
Sbjct: 9   DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALSSASGNTIHYGYILD 62

Query: 58  GR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                 +D+ ++ ++ +P+SFTG+D+ E   HG +  +  I++   K    R+A PGEF+
Sbjct: 63  RENNCKVDEVVVCLYRAPKSFTGQDAIEVMAHGSVVGIKKIIDLFLK-SGFRMAEPGEFT 121

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF   KIDL +AE++ +++ ++T     L++  +SG L          + +  S +  
Sbjct: 122 LRAFLAKKIDLTKAEAINEIVFAKTNKTYSLAVNKLSGALFVKIDAIKKNILNFLSAVSV 181

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LD+  ++   N     +LN    LK  I+S+    K+ E I +G  +V+ G  NAGKSS
Sbjct: 182 YLDYEVDDHEINIPFDLILNSKAELKKLINSY----KIYEKIDHGVTLVLAGSVNAGKSS 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           LFN   KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++  
Sbjct: 238 LFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNS 297

Query: 295 EVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH----- 341
            ++ A L++ + ++NS   + +ISF      N   +F+  K DL  +  TEE+       
Sbjct: 298 LIKEASLVIYVIDVNSNLTRDDISFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSSVLN 357

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMA 393
                +IS+   EG++ L +KI++++S +  ++     I S +R +  L +     L++ 
Sbjct: 358 SSNLIMISTKNLEGIDILYDKIRALISYERVEIGLDDIIISSRRQIQLLEKAYALILDLL 417

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S  ++    D++A +       LG+ITG V  E +L+ +F  FC+GK
Sbjct: 418 SKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLNNMFKNFCLGK 464


>gi|291277158|ref|YP_003516930.1| putative thiophene and furan oxidation protein [Helicobacter
           mustelae 12198]
 gi|290964352|emb|CBG40202.1| putative thiophene and furan oxidation protein [Helicobacter
           mustelae 12198]
          Length = 441

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 125/442 (28%), Positives = 235/442 (53%), Gaps = 25/442 (5%)

Query: 19  AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
           AI ++RLSG     + + + +KK+  PR A+L + +  +G ++D+ +++ F +P S+T E
Sbjct: 5   AIGVVRLSGKDALSITQRLTQKKEFLPRYATLCHVYD-EGEVVDEVIVLYFQAPHSYTCE 63

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HGG+ +   IL  L  +   R+A  GEF++RAF +G+ID  + +++ +LI ++
Sbjct: 64  DVCEIQCHGGVVLAREILR-LCLVNGARMATEGEFTKRAFLHGRIDFSQVQAIGNLIQAQ 122

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +    ++    + G L     Q  + L    +F E  +D+S+E D+   + +E+  DI  
Sbjct: 123 SLQASKMMSRQLMGSLRDFVEQSRESLLRALAFSETMIDYSDE-DIPEDALEELGRDISS 181

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L+  +   +   K+   I  G+ + I+G  N GKSSL NA+  ++ AIV+++ GTTRD +
Sbjct: 182 LQKQLVQILEFSKMRSKILEGHVLCIVGKPNVGKSSLLNAILMQERAIVSNVAGTTRDTI 241

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEIS 315
              + ++G+LV+I DTAGIRE  D +E  G++R+   +E +D++L++ + + +   +++ 
Sbjct: 242 EEVIFIDGHLVRIIDTAGIREGGDEIESIGVQRSLRAIEKSDIVLVVFDASRRLDEEDLQ 301

Query: 316 FPKNIDFI------FIGTKSDLYSTYTEEYDHLISSFTG-EGLEELINKIKSILSNKFK- 367
              ++D +       I  K+DL      E   L     G E        +  IL  K + 
Sbjct: 302 IIAHLDALPRKQVFAICNKNDLAPLLDVEL--LKGKLKGVEFFSMQTQSVGDILELKARI 359

Query: 368 --KLPFSIPSHKRHL----YHL---SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
             K+   +P+ +  L    Y +   ++ +  LEMA  + +   L++ + +L  A   +  
Sbjct: 360 GQKILQEMPAQENILLTADYQIDCVTKAIATLEMAEKHLQTLELELFSYHLNDAIEQISL 419

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           +T   ++E++ D +FS FC+GK
Sbjct: 420 LTKPYNIEEMFDRMFSIFCLGK 441


>gi|116750025|ref|YP_846712.1| tRNA modification GTPase TrmE [Syntrophobacter fumaroxidans MPOB]
 gi|205829177|sp|A0LLH5|MNME_SYNFM RecName: Full=tRNA modification GTPase mnmE
 gi|116699089|gb|ABK18277.1| tRNA modification GTPase trmE [Syntrophobacter fumaroxidans MPOB]
          Length = 470

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 130/408 (31%), Positives = 206/408 (50%), Gaps = 28/408 (6%)

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+ LD+ L+    +P ++T ED  E + H G AV+N ILE L      RLA+PGEF+RRA
Sbjct: 66  GQSLDEVLVGTMAAPHTYTREDVVEINCHSGFAVLNRILE-LVLREGARLADPGEFTRRA 124

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ ++I S +E    L+   + G L      W + L  ++S IEA +D
Sbjct: 125 FLNGRIDLSQAEAVIEVIRSRSEQGLLLANRLLRGALGEKVRSWREGLLELQSRIEATID 184

Query: 178 FSEEEDVQNFSSKEVLNDILFLKN-------DISSHISQGKLGEIIRNGYKIVILGHSNA 230
           F  E+D+   +   V +   F+          +S+ +   +    +R G  +V+ G  N 
Sbjct: 185 F--EDDLDEDALCAVSDRARFVTRLDGELIPALSAALESAERSRALREGVSLVLAGKPNV 242

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSL NAL  +D AIVT  PGTTRDV+     L G LV++ DTAG+R   D +E  GI 
Sbjct: 243 GKSSLLNALVGRDRAIVTPFPGTTRDVVEDTFLLSGILVRVLDTAGLRHDPDEIESFGIA 302

Query: 291 RTFLEVENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYT-----EEY 339
           RT   +E AD++L +    + ++++ +  +    +  F+ +  K DL    +     E Y
Sbjct: 303 RTIQSLEEADIVLCVMDRSRPLSAEDDAVVEAVASRPFVIVLNKEDLPPAISTGKIRERY 362

Query: 340 DHLISSFTGEGLEEL-INKIKSILSNKFKKLPF-----SIPSHKRHLYHLSQTVRYLEMA 393
              +       L    + +++  L+ +F +LP      +I  + R    + + ++ +  A
Sbjct: 363 GENVPIMAISALRPPDVERLRDFLNQRFLRLPLEQSGSAIVPNLRQRGCIEKALQAMIRA 422

Query: 394 -SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L       ++ +  LR A   L  + G    + LLD IFS FCIGK
Sbjct: 423 RDLISGGGFWELASTELRTARNELDSVLGWNGDDALLDRIFSDFCIGK 470


>gi|291165946|gb|EFE27993.1| tRNA modification GTPase TrmE [Filifactor alocis ATCC 35896]
          Length = 457

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 135/437 (30%), Positives = 218/437 (49%), Gaps = 57/437 (13%)

Query: 39  KKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE 98
           K+ + +PR     +    D  +LD+ L +  P+P ++T ED  E   HGG+     ILE 
Sbjct: 43  KQPEEYPRTLCYGHIVK-DNTVLDEVLTVYMPAPHTYTKEDIVEIQCHGGMIATKMILEW 101

Query: 99  LAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLY 158
           + +    R+A  GEF++RAF NG+IDL +AE++ D+IS++T     ++   + G +S+  
Sbjct: 102 VLE-NGARMAEHGEFTKRAFLNGRIDLSQAEAIKDIISAQTAKSFLVAQNQLQGSISNKI 160

Query: 159 GQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN 218
               +K+T   + I   +DF EE D    + +E+   +L  + ++   +   + G +++ 
Sbjct: 161 KSIRNKVTEDVAKITVAVDFPEE-DTPEVTYEELKESMLLCQTEMKQLLETFETGRLLKE 219

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G K  I+G  N GKSSL N + ++  AIVTDI GTTRDV+   + ++G  ++I DTAGIR
Sbjct: 220 GLKTAIIGKPNVGKSSLLNEILQEQRAIVTDIEGTTRDVIEEMITIDGVPLRIIDTAGIR 279

Query: 279 ETDDIVEKEGIKRTFLEVENA----------------DLILLLKEINSKKEISFPKNIDF 322
           +T+DIVE+ G+ R+   ++ A                D I+L +    K+          
Sbjct: 280 DTEDIVEQIGVSRSKEIMQQADLVLVLLDLSRPLTEEDHIILEQSKEKKR---------- 329

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGE-----------GLEELINKIKS-------ILSN 364
           I +  K+DL S +    +    S  GE           G+E L  +IK        I+SN
Sbjct: 330 ILLLNKTDLPSVWNPNEE---PSIAGEMVIQTSMSQKIGIETLKEQIKELVFQGQVIISN 386

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCV 423
                   + ++ RH   L   ++  E A  + E+   LDI+  + +     LG+ITG  
Sbjct: 387 D------GMLNNVRHKNSLIHAIKSSEDALDSIEQALPLDILETDFKNCWTYLGEITGET 440

Query: 424 DVEQLLDIIFSKFCIGK 440
             E+LLD IF  FCIGK
Sbjct: 441 VSEELLDTIFKNFCIGK 457


>gi|302842518|ref|XP_002952802.1| hypothetical protein VOLCADRAFT_82002 [Volvox carteri f.
           nagariensis]
 gi|300261842|gb|EFJ46052.1| hypothetical protein VOLCADRAFT_82002 [Volvox carteri f.
           nagariensis]
          Length = 596

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 139/481 (28%), Positives = 233/481 (48%), Gaps = 61/481 (12%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----PRKASLRYFFGL 56
             +++TI A+ +G    +++IIR+SG     +   + +    F     P+   + Y   +
Sbjct: 135 TRDEDTIAAIVSGMAHGSVAIIRVSGTDAVSIASRVFRPGGRFRFGWQPKSHRVYYGTAV 194

Query: 57  DG--RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
           DG   +LD+ LL+   SP S+T ED  E H HGG      +L  L +    RLA PGEF+
Sbjct: 195 DGDESLLDEVLLLAMLSPRSYTAEDVVEVHCHGGGVCGGRVLRALIEA-GARLAKPGEFT 253

Query: 115 RRAFENGKIDLLEAESLADLISSET----EMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
            RAF NG++DL +AE++++L+++ T    +        G+ G +S L  Q +D L  +  
Sbjct: 254 LRAFLNGRLDLAQAEAVSELLTARTPAAADSALAGLRGGLGGVVSELRSQCLDVLAEL-- 311

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
             EA LDF  +ED+      E+   +  ++  I   +   + G ++RNG ++ I+G  N 
Sbjct: 312 --EARLDF--DEDLTQIDIPELKRKVERIQAGIERALRTARAGTLLRNGLQVAIVGRPNV 367

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSL NA    D AIVT++ GTTRDVL   L + G  V + DTAGIR+++D+VE+ G++
Sbjct: 368 GKSSLLNAWTNSDRAIVTEVAGTTRDVLEATLSIGGVPVTLLDTAGIRQSNDVVERIGVE 427

Query: 291 RTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
           R+      AD+++++ +  +             +    SD++     +     +   G  
Sbjct: 428 RSQAAAAAADIVIMVVDGAAG------------WTDADSDIFKALWGDGPGSSTCKVGRL 475

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA----------SLNEK-- 398
             +    +  +  + F  +  +  S +R L  L   +  L  A          S+NE+  
Sbjct: 476 SLQQQLLLPLVARDTFAAVVRTSASQRRGLEELDAALLQLAGAPKLASGGVSWSINERQG 535

Query: 399 -------------------DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439
                              D  LD    +LR A ++LG+++G    E++LD +FS+FCIG
Sbjct: 536 EALVRSHEALMRLTESIAADLPLDFWTIDLRSALLALGEVSGDEVAEEVLDTVFSRFCIG 595

Query: 440 K 440
           K
Sbjct: 596 K 596


>gi|224367780|ref|YP_002601943.1| TrmE [Desulfobacterium autotrophicum HRM2]
 gi|223690496|gb|ACN13779.1| TrmE [Desulfobacterium autotrophicum HRM2]
          Length = 465

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 135/421 (32%), Positives = 215/421 (51%), Gaps = 45/421 (10%)

Query: 52  YFFGLD-GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANP 110
           Y F +  G ++D+ LL+   +P S+T ED  E   H G   +  IL+++      R+A P
Sbjct: 58  YIFDIKTGYVIDEVLLVTMEAPRSYTAEDVVEIQSHAGHLAMATILDQVVSA-GARIAEP 116

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           GEF++RAF NG+IDL +AE++AD+I++ T    +++    +GEL        + L  + +
Sbjct: 117 GEFTKRAFLNGRIDLTQAEAVADIINARTAGALKIAAAQGTGELKDAIHGAREILIELLA 176

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS---HISQGKLGEIIRNGYKIVILGH 227
            +EA +DF +E   Q+    +    I+ +K  +++    I   +    +R+G K+ I G 
Sbjct: 177 LLEAAIDFPDE--TQDLVPSD--QGIVRVKQVLTACEKFIQTYEEAHFLRDGIKLAICGP 232

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKSSL N L +K+ +IVT++PGTTRD++   L++ G    +SDTAG+ +TDD+VE+ 
Sbjct: 233 PNVGKSSLMNRLLQKERSIVTELPGTTRDLIEETLNINGITFLVSDTAGMHQTDDLVERI 292

Query: 288 GIKRTFLEVENADLILLLKEINSKKEIS-------FPKNIDFIFI--------------- 325
           GI+R    +  +DLIL +K   + KEIS        PK+   I +               
Sbjct: 293 GIERAKKHIAASDLILFMK--GADKEISESELQSIVPKDKKVILVINKIDLIEGKTAGSA 350

Query: 326 GTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           G +  L  T  +     IS+    G++ L   I  +      +    +P + RH   L +
Sbjct: 351 GVEKSLPPTLAQLPQVRISALKNTGIDHLRKTITRLSMENIGEASSVVP-NLRHRTALKR 409

Query: 386 TVRYLEMASL------NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439
            ++ L+ A        NE+   LDI     R A+  LG+ITG      +LD IFS FCIG
Sbjct: 410 AIKSLKTAEAGFLNGQNEETLALDI-----RRAADLLGEITGNTAGIDILDTIFSNFCIG 464

Query: 440 K 440
           K
Sbjct: 465 K 465


>gi|160932434|ref|ZP_02079824.1| hypothetical protein CLOLEP_01269 [Clostridium leptum DSM 753]
 gi|156868393|gb|EDO61765.1| hypothetical protein CLOLEP_01269 [Clostridium leptum DSM 753]
          Length = 464

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 135/462 (29%), Positives = 223/462 (48%), Gaps = 39/462 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGRIL 61
           TI A+ST      I +IR+SG     + +  F     K   +       +G    +G  +
Sbjct: 14  TIAAISTAQGVGGIGVIRVSGRDALAIGDRVFQSSGGKKLSQMKGYTAAYGRIRSNGEDI 73

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEFSRRAF 118
           D+ + +VF +P S+TGED  EF  HGG+ +   +L  +      P    A PGEF+RRAF
Sbjct: 74  DEAVALVFRAPHSYTGEDVVEFSCHGGLYLTRRVLRAVLDGGASP----AGPGEFTRRAF 129

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+ L EAE++ D+I ++     R ++ G  G +        D L    + + A  D+
Sbjct: 130 LNGKMGLTEAEAVMDMIGAKGRQAARTALAGRDGAIHKAIASVKDSLVFTAAHLSAWADY 189

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            EE D+      E+   +   +  +   +SQ   G+ IR G   VI G  N GKS+L N 
Sbjct: 190 PEE-DIPQVEEMELTARLKKAEAALERLLSQYDAGKAIREGLNTVIAGRPNVGKSTLMNL 248

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L+  + +IVT++PGTTRDV+   + +    +++SDTAGIR T+D+VE+ G+ R    ++ 
Sbjct: 249 LSGCERSIVTELPGTTRDVVEETVLVGDVTLRLSDTAGIRSTEDLVEQIGVNRAKDRIQT 308

Query: 299 ADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH--------LIS 344
           ADL+L +    +E+N   +  +   + +  I +  K+DL +    +Y          L++
Sbjct: 309 ADLVLAVFDASQELNEDDRNLLDSLQGVPSIAVINKTDLDAKIDVKYIKNKVKQIVFLVA 368

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK------ 398
           S  G+GLE+L   +  +      +     PS         Q      +A +NE       
Sbjct: 369 S-EGKGLEDLQQALAELAGTSELE-----PSEGLLATERQQQAAKEALACVNEGLEALEL 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LD +  ++  A  +L ++TG    E ++D +F +FC+GK
Sbjct: 423 GMTLDAVTVSIEGAVQALLELTGERASEAVVDQVFHRFCVGK 464


>gi|291541857|emb|CBL14967.1| tRNA modification GTPase TrmE [Ruminococcus bromii L2-63]
          Length = 455

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 135/464 (29%), Positives = 236/464 (50%), Gaps = 33/464 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL- 56
           MN++  T+ A+ST      I +IR+SG    ++ + I      KK    K     F  + 
Sbjct: 1   MNYD--TVAAISTAQGEGGIGVIRISGDDALRIADKIFYSVSGKKVTEMKGYTASFGKIS 58

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +G  +D+ + +VF +P S+TGED  E   HGG+ +   +L  +     +  A  GEF++
Sbjct: 59  ENGEDIDEAVALVFKAPHSYTGEDVVELSCHGGLYITKRVLRAVLNAGAVP-AQAGEFTK 117

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NGKIDL EAE++ D+IS+++    R ++    G L        + L  + + + A 
Sbjct: 118 RAFLNGKIDLTEAEAVIDIISAKSRGAARSALCVKEGALRKKIDGVKNDLLSMAAHLSAW 177

Query: 176 LDFSEEEDVQNFSSKEVL----NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
            D+ EE D+   ++  V+    N I   K+ + S+      G+ ++ G   VI G  N G
Sbjct: 178 ADYPEE-DIAEVTADSVIETCDNAIKCFKSLLDSY----DCGQAVKKGIDTVIAGRPNVG 232

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KS+L N L+  + +IVTDIPGTTRD++   + +   ++ +SDTAG+R+T+D VEK G+ R
Sbjct: 233 KSTLMNLLSGYEKSIVTDIPGTTRDIVEDTVTVGDVVLNLSDTAGLRDTEDTVEKIGVDR 292

Query: 292 TFLEVENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDL-------YSTYTEE 338
               +E   L+L +    +E++      I   K +  I +  K+DL       Y +   +
Sbjct: 293 ARKRLEQCGLLLAVFDNSRELDEDDYALIESAKLVPSIAVINKTDLDNKLDIEYISKNIK 352

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           Y   IS+ +G+G +EL   ++ I   +       + S++R    +   +  + + ++N  
Sbjct: 353 YIVYISAISGDGRDELTKAVEKIAGTQNFNPSEGVLSNERQRIAVKNALDSV-VEAMNAL 411

Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            CG+  D +  ++  A   L ++TG    ++++D +F  FC+GK
Sbjct: 412 KCGMTFDAVTVSIEDAISHLLELTGERTSDEVVDRVFHNFCVGK 455


>gi|328794276|ref|XP_001123208.2| PREDICTED: tRNA modification GTPase mnmE-like, partial [Apis
           mellifera]
          Length = 342

 Score =  176 bits (445), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 189/345 (54%), Gaps = 25/345 (7%)

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AES+ADLI + ++   R+++    G  S    + +D L  +R  +EA 
Sbjct: 1   RAFLNNKLDLAQAESVADLIDAASQSAARMAVRSXKGAFSEEIHRLVDDLITLRMLVEAT 60

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF EE D+    + +    +  L++ +   +   + G ++R G  +V++G  N GKSSL
Sbjct: 61  LDFPEE-DIDFLQAADASGKLKQLRDRLDKVLQHAQQGALLREGMNVVLVGAPNVGKSSL 119

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  D+AIVTDI GTTRD +   + L+G  V I DTAG+RET+D+VE+ GI+R+   
Sbjct: 120 LNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETEDVVERIGIERSQQA 179

Query: 296 VENADLILLL----KEINSKKE---ISFPKNIDFIFIGTKSDL----YSTYTEEYDHL-- 342
           V+ AD+ L+L    + +N+         P ++  I +  K DL     S  + E   L  
Sbjct: 180 VQQADVALILIDQCEGLNATTAAILAQLPASLHKIEVHNKIDLTGEAASCVSRETGKLRA 239

Query: 343 ---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
                    +S+ TGEGL+ L   +   +  + +     + +  RH+  L Q    L  A
Sbjct: 240 FTDAGQVIALSARTGEGLDLLRQALLQQVGWQGESEGLFL-ARTRHIQALEQAKEELLNA 298

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
           S+ +++  +++ AE+LRLA  +L +ITG    + LL +IFS+FCI
Sbjct: 299 SMCQEN-QIELFAEHLRLAQNALNEITGEFSADDLLGVIFSRFCI 342


>gi|317178156|dbj|BAJ55945.1| tRNA modification GTPase TrmE [Helicobacter pylori F16]
          Length = 450

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 148/455 (32%), Positives = 232/455 (50%), Gaps = 27/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AIS+I++SG +   + + + +K+   PR A +R  F  +G +LDK L
Sbjct: 3   DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +  D L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARDNLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLNDILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +F  +  LN    L+  I+S    +    + +    G+ + I+G  NAGKSSL NA+  +
Sbjct: 181 DFLDEVSLN----LEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLE 236

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+I
Sbjct: 237 ERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDII 296

Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           L + +++   E      ID         I +  K+DL      E            LE  
Sbjct: 297 LGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETN 356

Query: 355 INKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASL---NEKDC--GLDII 405
               K+ L +  +K+    P     +K  L  L+Q    LE A     N KD    L++ 
Sbjct: 357 TLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTA-LENAIFELQNAKDHLETLELF 415

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 416 SYHLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450


>gi|42525230|ref|NP_970610.1| tRNA modification GTPase TrmE [Bdellovibrio bacteriovorus HD100]
 gi|81829094|sp|Q6MGL5|MNME_BDEBA RecName: Full=tRNA modification GTPase mnmE
 gi|39577441|emb|CAE81264.1| probable tRNA modification GTPase trmE [Bdellovibrio bacteriovorus
           HD100]
          Length = 479

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 138/476 (28%), Positives = 240/476 (50%), Gaps = 41/476 (8%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----L 56
           + +K+TI A+ST      IS+IR+SGP    +   IC+     P   S + +FG      
Sbjct: 8   DRDKDTICAISTPHGVGGISVIRVSGPQTLNIVSKICQFLPAHPE--SHKVYFGNLKNSQ 65

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G  +D+ L   F    SFTGE+  E   HG   +   IL +L  +   R A+ GEF+ R
Sbjct: 66  TGDEIDEVLATYFKEGRSFTGEEVIEISCHGSPLICQTILNQLVNL-GARPADRGEFTFR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGK+DL++AES+  LI S+++   +L++  + G LS    +  D +T I +  EA +
Sbjct: 125 AFMNGKLDLVQAESVLSLIESQSQQAAKLALRQLKGTLSHKLEEIEDDMTWILAHAEASI 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DFS E  ++      +   +  ++  +   ++  K+G ++++G++IV+ G  N GKSSL 
Sbjct: 185 DFSTE-GIEVIEENVIQVRLKKIEAGLKELVATFKVGRLLKDGFRIVLTGLPNVGKSSLL 243

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLE 295
           N   + + AIVTDIPGTTRDV+  D   EG      DTAG+R E  D+VE+ GI++++  
Sbjct: 244 NLFLEDERAIVTDIPGTTRDVIHGDTTFEGVKFTFVDTAGLRDEATDLVERIGIQKSYEA 303

Query: 296 VENADLILLLKEIN---SKKEISFPKNID---FIFIGTKSDLY---------------ST 334
              +D++  + +I      +E+   +++D      +  K+D                 S 
Sbjct: 304 QNESDVVFFVYDIEKGLGAEELQILESLDPAKTYILANKTDKIGGSKPLETVEKTLKNSK 363

Query: 335 YTEEYDHLISSFTGEG--LEELINKIKS----ILSNKFKKLPFS---IPSHKRHLYHLSQ 385
           + ++     + FT     +  L  K++S     L  +F  L      + S+ RH  +L++
Sbjct: 364 FFQKLADPAAFFTRRVFFVSALDKKVRSEVLKDLVKEFADLQVENTVLISNARHFENLTR 423

Query: 386 TVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   + + S+  +  G + +A   + A +++ +  G    +Q++D +F +FCIGK
Sbjct: 424 ALENTQRSQSVVAQGLGAEFLALEFKEALIAIHETLGKRFDDQIMDRVFKEFCIGK 479


>gi|254779963|ref|YP_003058070.1| tRNA modification GTPase TrmE [Helicobacter pylori B38]
 gi|254001876|emb|CAX30126.1| tRNA modification GTPase [Helicobacter pylori B38]
          Length = 450

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 149/457 (32%), Positives = 234/457 (51%), Gaps = 31/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AISII++SG +   + + + +K+   PR A +   F  DG +LDK L
Sbjct: 3   DTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVHDIFS-DGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGSPILAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +  D L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARDNLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241
            F  +  LN    I   K+ +    +Q +     RN G+ + I+G  NAGKSSL NA+  
Sbjct: 181 EFLKEVSLNLEKQIASFKDLLDFSNTQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 235

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+
Sbjct: 236 EERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDI 295

Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEY--DHLISSFTGEGL 351
           IL + +++   E      ID         I +  K+DL      E    HL   +T   L
Sbjct: 296 ILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKNDLAPKLELEILKSHLKIPYT--LL 353

Query: 352 EELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLD 403
           E      K+ L +  +K+    P     +K  L  L+QT       +E+ +       L+
Sbjct: 354 ETNTLNSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQTTALENAIIELQNAKNHLETLE 413

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + + ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 414 LFSYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|227529882|ref|ZP_03959931.1| tRNA modification GTP-binding protein TrmE [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350186|gb|EEJ40477.1| tRNA modification GTP-binding protein TrmE [Lactobacillus vaginalis
           ATCC 49540]
          Length = 462

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 139/462 (30%), Positives = 242/462 (52%), Gaps = 25/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD--- 57
           N + +TI A+ST      ISIIR+SG     V + I + K        ++ Y   +D   
Sbjct: 3   NTDNDTIAAISTPVGEGGISIIRISGDDAIPVAQKIYRGKDLAKVHTNTINYGHVIDPDN 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ ++ V  +P ++T ED  E + HGG+   N IL+ L      R+A PGEF++RA
Sbjct: 63  NEEVDEVMVSVMRAPHTYTCEDVVEINCHGGLLATNRILQ-LVLSYGARMAEPGEFTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL ++E++ DLI ++T+   ++++  + G LS L  +    +  + + +E ++D
Sbjct: 122 FLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGNLSHLIRKLRKDILDVLAQVEVNID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E + V+  ++K +      ++  I + +   K G+++R G    I+G  N GKSSL N
Sbjct: 182 YPEYDAVEEMTTKMLKEKATEIRQRIEALLKTAKQGKVLREGLATAIIGRPNVGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +L  +D AIVT++ GTTRDV+   +++ G  +K+ DTAGI +T D VEK G++R+  +  
Sbjct: 242 SLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIHDTKDQVEKIGVERSR-KAL 300

Query: 298 NADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYSTYTEEY-------DHLI 343
           +A  ++LL   NS       ++ +   K+   I I  K+DL +    +        D LI
Sbjct: 301 DAADLILLLIDNSEELTAEDRELLEATKDKQRIVILNKTDLPNKVDRDELKKLVGDDKLI 360

Query: 344 SS--FTGEGLEELINKI-KSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYL-EMASLNEK 398
            +     EG+ +L   I K       +    S+  ++ RH+  L Q    L ++      
Sbjct: 361 ETSIVKNEGMNQLGETISKMFFEEGIENNQNSVMVTNARHIGLLHQADDALGDVLKGIAA 420

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 421 GMPVDLVQIDMTRCWDLLGEITGDSYQDELLDQLFSQFCLGK 462


>gi|94987514|ref|YP_595447.1| tRNA modification GTPase TrmE [Lawsonia intracellularis PHE/MN1-00]
 gi|205415772|sp|Q1MPF1|MNME_LAWIP RecName: Full=tRNA modification GTPase mnmE
 gi|94731763|emb|CAJ55126.1| predicted GTPase [Lawsonia intracellularis PHE/MN1-00]
          Length = 459

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 141/415 (33%), Positives = 216/415 (52%), Gaps = 35/415 (8%)

Query: 52  YFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
           Y        LD  L +  P+P +FTGED  E H HGG  ++  ILE +    N+RLA PG
Sbjct: 54  YLVAPTNEFLDDILAVYMPAPYTFTGEDVVELHCHGGHFLLLTILETVL-CKNIRLAKPG 112

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI----DKLTH 167
           EFS+RAF NG++DL +AE++A+LI++ +  +  L+    S  L  L GQ I     ++  
Sbjct: 113 EFSQRAFLNGRMDLTQAEAVAELIAASSRNEVLLA----SNRLKGLLGQKIIDIRRRIEE 168

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R +I   +DF EEE    F  ++ +N +L +   I   I   +     + G  + + G 
Sbjct: 169 LRVWICLAVDFPEEES-GIFPLEKFINGLLEIHEIIQKLIHAAERSRCWKEGVTVALAGA 227

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL NAL  K+ AIVT+ PGTTRD L   + +    +++ DTAG+R T D +E++
Sbjct: 228 VNAGKSSLLNALLGKERAIVTEHPGTTRDFLEECIIVNSLSIRLIDTAGLRVTSDPIEEQ 287

Query: 288 GIKRTFLEVENADLILLLKE--INSKKEISFPKNIDF-----IFIGTKSDLY---STYTE 337
           GI++   +++ AD+IL + +  +   +E     N +F     I +  K DL    S +TE
Sbjct: 288 GIQKGREKIDEADVILFIIDGTVGVTEESKLLIN-NFGVERTILVWNKVDLKVPPSNWTE 346

Query: 338 EYDH------LISSFTGEGLEELINKIKS-ILSNKFKKLPF--SIPSHKRHLYHLSQTVR 388
            Y         +S+ TG G+EEL+  + + +LS    + P   +I  + R +   S  + 
Sbjct: 347 LYTSSQVSGICVSAKTGSGIEELLVLLYNFVLSQHNAQEPTFDTIVPNMRQVEVFSLVLE 406

Query: 389 YLEMASLNE---KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E+ SL E        D+ A  L   S  L  I G    E++L+ IF+ FCIGK
Sbjct: 407 --EIRSLYEDIRSGIPYDLCAVMLENISSMLNSIIGFDTPEEVLNRIFASFCIGK 459


>gi|225575683|ref|ZP_03784293.1| hypothetical protein RUMHYD_03776 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037100|gb|EEG47346.1| hypothetical protein RUMHYD_03776 [Blautia hydrogenotrophica DSM
           10507]
          Length = 364

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/305 (37%), Positives = 174/305 (57%), Gaps = 8/305 (2%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGL---DGRI 60
           TI A+ST    S I I+R+SG     V + I + K   K   +  S    +G    +  +
Sbjct: 4   TIAAISTAMSASGIGIVRISGEHSVDVIKKIYRSKNGKKQLDQVPSHTIHYGYIYDEEEM 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L++V  +P ++TGED+ E   HGG+  +  +L+ + K    + A PGEF++RAF N
Sbjct: 64  IDEVLVMVMRAPRTYTGEDTVEIDCHGGVCAMRRVLDTVLK-HGAKTAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ D+I+S+ E   + SM  + G +     +    L +  ++IE+ LD  E
Sbjct: 123 GKLDLSQAEAVIDVINSKNEFALKSSMSQLKGSVKREIEKIRSSLIYHIAYIESALDDPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              +  +  +E+       K  I   +S  + G++IR G + VILG  NAGKSSL N L 
Sbjct: 183 HISIDGYG-EELKMTTTQEKEKIYRLLSTVREGKMIREGIQTVILGKPNAGKSSLLNLLI 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + L G  +KI DTAGIR+T+D+VE+ G+ +     + AD
Sbjct: 242 GENKAIVTDIAGTTRDVLEECITLSGISLKIIDTAGIRDTEDLVEQIGVDKAKEMGKEAD 301

Query: 301 LILLL 305
           LIL +
Sbjct: 302 LILYV 306


>gi|288925846|ref|ZP_06419777.1| tRNA modification GTPase TrmE [Prevotella buccae D17]
 gi|288337501|gb|EFC75856.1| tRNA modification GTPase TrmE [Prevotella buccae D17]
          Length = 512

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 190/346 (54%), Gaps = 17/346 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRY--FFGLDGRI 60
           TI A++T A   AI ++R+SG    ++ + I K    +K    +  +L Y      +   
Sbjct: 9   TICALATPA-GGAIGVVRVSGSEAIKIADHIFKAKSGRKLANAKGNTLHYGEIVNHNRET 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +  V+ +P S+TGED+ EF  HG   ++  +L  L +    R A PGE+++RA+ N
Sbjct: 68  IDDVMASVYRAPFSYTGEDAVEFSCHGSQYILQEVLHLLIQ-NGCRQAEPGEYTQRAYLN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI+S      ++++  + G  S+      D+L  + S +E +LDFS+
Sbjct: 127 GKMDLSQAEAVADLIASTNRATHKMAISQLKGHFSNELVLLRDRLLKMTSLLELELDFSD 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+++    K++L     +   I+S I   + G  ++NG  + I+G +N GKS+L N L 
Sbjct: 187 HEELEFADRKQLLELACQIDEKITSLIQSFETGNALKNGIPVAIVGKTNVGKSTLLNRLL 246

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV+DI GTTRD +     + G   +  DTAGIR+T+D VE+ GI RT+ +++ A 
Sbjct: 247 HEERAIVSDIHGTTRDTIEDTTLINGVAFRFIDTAGIRKTEDEVERIGIDRTYQKIDQAT 306

Query: 301 LILLLKEINSK-------KEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +++ + + +         K     KN+  I +  K D+  T++  Y
Sbjct: 307 VVVWMIDTSPSALEQEDMKSKCIGKNV--ILVHNKVDIARTHSPSY 350


>gi|217033917|ref|ZP_03439341.1| hypothetical protein HP9810_870g49 [Helicobacter pylori 98-10]
 gi|216943680|gb|EEC23125.1| hypothetical protein HP9810_870g49 [Helicobacter pylori 98-10]
          Length = 450

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 146/455 (32%), Positives = 233/455 (51%), Gaps = 27/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AIS+I++SG +   + + + +K+   PR A +R  F  +G +LDK L
Sbjct: 3   DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +  + L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLNDILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +F ++  LN    L+  I+S    +    + +    G+ + I+G  NAGKSSL NA+  +
Sbjct: 181 DFLNEVSLN----LEKQIASFKDLLDFSNMQKQKNKGHTLSIVGKPNAGKSSLLNAMLLE 236

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D++
Sbjct: 237 ERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIV 296

Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           L + +++   E      ID         I +  K+DL      E            LE  
Sbjct: 297 LGVFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELETLKSYLKIPYSLLETN 356

Query: 355 INKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASL---NEKDC--GLDII 405
               K+ L +  +K+    P     +K  L  L+Q    LE A     N KD    L++ 
Sbjct: 357 TLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTA-LENAIFELQNAKDHLETLELF 415

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 416 SYHLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450


>gi|317154267|ref|YP_004122315.1| tRNA modification GTPase TrmE [Desulfovibrio aespoeensis Aspo-2]
 gi|316944518|gb|ADU63569.1| tRNA modification GTPase TrmE [Desulfovibrio aespoeensis Aspo-2]
          Length = 469

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 146/479 (30%), Positives = 230/479 (48%), Gaps = 54/479 (11%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-------PFPRKASLRYFF 54
              ++TI A++T      + I+R+SG     +   I +  +       P+    +L Y  
Sbjct: 5   RRSRDTIAAIATPPGDGGVGIVRISGDRSRAIAARIFRPARASFTEFIPY----TLHYGR 60

Query: 55  GLDGR--ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
            +DGR  +LD  L+   P P S+TGED  E + HGG AV+  +LEE+ +    RLA  GE
Sbjct: 61  IVDGRDAVLDDVLVACMPGPGSYTGEDVVEINCHGGRAVLAAVLEEVLRC-GARLAERGE 119

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL----THI 168
           F+ RAF +G++DL +AE++A++I + T     L+      +LS L GQ I  L      +
Sbjct: 120 FTYRAFMHGRLDLTQAEAVAEMIHAPTRSAAHLA----QAKLSGLLGQRIAALRTRLEAL 175

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           R+ +   +DF ++E V+    + +   +  ++ DI   +         R G  +V+ G  
Sbjct: 176 RAALAVAVDFPDDE-VECLPPEALAGGVAGVRVDIMDLLRAVDRTRTWREGALVVLAGRV 234

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD------D 282
           NAGKSSL N L  +  AIVTD PGTTRD L   + L+G  V++ DTAG+R         D
Sbjct: 235 NAGKSSLMNGLLGRTRAIVTDQPGTTRDYLEETVTLDGLSVRLVDTAGMRADTAAAPRID 294

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST 334
            VE  G+      ++ ADL+LLL +  +           +  P+    +   T+ DL   
Sbjct: 295 AVEAAGMAMGRELMDRADLVLLLADGTAPLDSGTLSLATVLSPERTLAVL--TRRDLPGF 352

Query: 335 YTEEYDHL---------ISSFTGEGLEELINKIK-SILSNKFKKLPFSIPSHKRH---LY 381
                  L         ISS TG GL+ L  +++  +L+   +  P  +  + R    L 
Sbjct: 353 DPAHGAPLAGLGFELVEISSVTGHGLDTLCARVRERVLAGAGQPDPDELAPNARQAAILA 412

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++ +R LE  +L       D++   L  A V+L  ITG +  +++L  IF  FCIGK
Sbjct: 413 EAAEELRQLEADALAA--VPYDLLGVRLETACVTLSSITGEITSQEVLASIFDTFCIGK 469


>gi|157781563|gb|ABV72136.1| GTP-binding thiophene and furan oxidation protein [Tetragenococcus
           solitarius]
          Length = 269

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/270 (36%), Positives = 161/270 (59%), Gaps = 6/270 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGR---ILDKGL 65
           +ST     AISI+RLSG       + + K K+   +  S    +G  +D +   +LD+ +
Sbjct: 1   ISTPPGEGAISIVRLSGEEAIPAADRVFKAKRSLEQAQSHTIHYGHIVDPKTNELLDEVM 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           + +  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG+IDL
Sbjct: 61  VSIMRAPKTFTREDIVEINCHGGIVVVNQILQLLLR-SGARLAEPGEFTKRAFLNGRIDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ DLI ++T+    +++  + G LS L      ++ +  + +E ++D+ E +DV+
Sbjct: 120 SQAEAVMDLIRAKTDKAMNVALNQLDGNLSHLIRSLRQEVLNTLAQVEVNIDYPEYDDVE 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +SK +L     +K  I S ++  + G+I+R G    I+G  N GKSSL N L K++ A
Sbjct: 180 EMTSKLLLEKATQVKQQIQSLLATAQQGKILREGLNTAIIGRPNVGKSSLLNQLLKEEKA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IVT++ GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 IVTEVAGTTRDVVEEYVNVRGVPLKLIDTA 269


>gi|158520121|ref|YP_001527991.1| tRNA modification GTPase TrmE [Desulfococcus oleovorans Hxd3]
 gi|158508947|gb|ABW65914.1| tRNA modification GTPase TrmE [Desulfococcus oleovorans Hxd3]
          Length = 462

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 137/452 (30%), Positives = 217/452 (48%), Gaps = 38/452 (8%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGL---DGRILDKGLLIV 68
           I I+RLSGP    +   +   + P    ASL        R + G    D  ++D+ LL+V
Sbjct: 18  IGIVRLSGPRAVAIALSVFSSR-PDAAAASLSEAGAESHRMYHGYVFDDDALVDEVLLVV 76

Query: 69  FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEA 128
             +P S+TGED AE H HGG AVV+ + + L        A PGEF++RAF NG+IDL +A
Sbjct: 77  MRAPRSYTGEDVAEIHTHGGPAVVSAVCD-LVLRAGAEPAAPGEFTQRAFLNGRIDLTQA 135

Query: 129 ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS 188
           E++AD+I + +  Q + +   +SGE+          L  + + +EA ++F ++ +  +FS
Sbjct: 136 EAVADMIEAASIEQVKAAAAQVSGEIRQAVSGLKQSLAGLMAEMEAAIEFDDQVE-GSFS 194

Query: 189 SKEVL----NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            ++       ++L    D+       + G     G  +VI G  NAGKS+L N L   D 
Sbjct: 195 PEKAACRIETEVLPCLQDLLDRRRATEAG----RGATVVIAGPPNAGKSTLLNRLLGTDR 250

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           A+V++IPGTTRD++   + + G     +DTAG+R ++ D VE  G+ R    ++ ADLIL
Sbjct: 251 ALVSEIPGTTRDLVDGRVWVSGTPFVFTDTAGLRPDSGDAVEAMGMARARTAMDQADLIL 310

Query: 304 LLKEI------NSKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLISSFTGE 349
            + +        S           F+ +  KSDL         S +       +S+  G 
Sbjct: 311 FVVDAAAGMGPESGALFCEASAKPFVVVANKSDLPEARGFMPPSAWPAAPVVHVSALHGL 370

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAEN 408
           G++EL N +  ++  +          + RH   L      L  A    K+    D+   +
Sbjct: 371 GIKELKNLLVRMVGEQAVPASGRAAPNPRHRAALVACREALVAAGAALKNGVPADVAVLD 430

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +R A   L +I+G      +LD IF +FCIGK
Sbjct: 431 IRAAVDRLNEISGEGAGPTVLDAIFERFCIGK 462


>gi|154149158|ref|YP_001406236.1| tRNA modification GTPase TrmE [Campylobacter hominis ATCC BAA-381]
 gi|205829130|sp|A7I145|MNME_CAMHC RecName: Full=tRNA modification GTPase mnmE
 gi|153805167|gb|ABS52174.1| tRNA modification GTPase TrmE [Campylobacter hominis ATCC BAA-381]
          Length = 466

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 140/479 (29%), Positives = 232/479 (48%), Gaps = 59/479 (12%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--------------------- 44
           ETI AV+T      ISI+RLSG +   + + +  K +                       
Sbjct: 3   ETIVAVATAHGIGGISIVRLSGENALSLSDILINKNRKKNKTQNSVSSSQNRIQNFKKIN 62

Query: 45  --PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102
             PR A+L   +  DG  +D+ ++I + SP SFTGED  EF +HGG  + N I++EL   
Sbjct: 63  LKPRYATLCELYDNDGNFMDESVVIYYKSPNSFTGEDIVEFQIHGGFTLENLIMDELI-T 121

Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162
              R+A PGEFS+RAF N K+DL +AE++  +I S ++   ++    + GEL +      
Sbjct: 122 NGARIAMPGEFSKRAFLNDKMDLSKAEAIQSIILSRSKSAAKILARNLHGELKNFVIDLR 181

Query: 163 DKLTHIRSFIEADLDFSEEE-------DVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
            ++    +F+E  +D+++++        +QN  S+ +       K D  + IS  + G  
Sbjct: 182 KEIVKTMAFVETCIDYADDDLPNDILDKIQNLLSENIT------KIDEITQISASRRG-- 233

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +  G+K+ I+G  N GKSS+ N+L K   AIV+D  GTTRD +  +L +  +L++I DTA
Sbjct: 234 LLEGFKVAIIGKPNVGKSSILNSLLKFSRAIVSDEAGTTRDRIEENLQIGSHLIRIIDTA 293

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYS 333
           GIR++++ VE  GI  +      AD+IL +   ++ +E  F K  + IF  +  + D   
Sbjct: 294 GIRKSENSVENIGISYSIKAANEADIILAV--FDASRE--FDKEDEKIFEILQNQKDKKI 349

Query: 334 TYTEEYDHLISSFTGEGLEELI--------NKIKSILSNKFKKLPFS--IPSHKRHLYHL 383
                   L   F     +  +          I  +L++      F   + S  R +   
Sbjct: 350 IKILNKIDLALKFKAGNSDNFLKISAKNDTKIITKVLNDYLNSQNFDGIMLSSNRQIMAF 409

Query: 384 SQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S   + L+ A   LNE    L++ A  L +A   +  I    + +++L+ +FS FC+GK
Sbjct: 410 SNAGKALKRAQNLLNEN--SLELFAFELNIAIKEIASIYKPFERDEILESMFSNFCLGK 466


>gi|261840127|gb|ACX99892.1| tRNA modification GTPase TrmE [Helicobacter pylori 52]
          Length = 450

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 148/456 (32%), Positives = 233/456 (51%), Gaps = 29/456 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AIS+I++SG +   + + + +K+   PR A +R  F  +G +LDK L
Sbjct: 3   DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +  + L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241
           +F  +  LN    I   K+ +    +Q +     RN G+ + I+G  NAGKSSL NA+  
Sbjct: 181 DFLDEVSLNLEKQIASFKDLLDFSNTQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 235

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+
Sbjct: 236 EERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDI 295

Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           +L + +++   E      ID         I +  K+DL      E            LE 
Sbjct: 296 VLGVFDLSKPLEQEDFNLIDTLNRTKKPCIVVLNKNDLVPKLELEILKSYLKIPYSLLET 355

Query: 354 LINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASL---NEKDC--GLDI 404
                K+ L +  +K+    P     +K  L  L+Q    LE A     N KD    L++
Sbjct: 356 NTLNSKACLKDLSQKISTFFPKLDTQNKLLLTSLAQKTA-LENAIFELQNAKDHLETLEL 414

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 415 FSYHLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450


>gi|269122719|ref|YP_003310896.1| tRNA modification GTPase TrmE [Sebaldella termitidis ATCC 33386]
 gi|268616597|gb|ACZ10965.1| tRNA modification GTPase TrmE [Sebaldella termitidis ATCC 33386]
          Length = 456

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 150/461 (32%), Positives = 237/461 (51%), Gaps = 33/461 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--DG-RILD 62
           ETI A+ST      I IIR+SG   F++   I K K P       ++ +G   DG  +LD
Sbjct: 3   ETIAAISTPRGEGGIGIIRISGDDSFEILNKIFKAKNPNKDLGFYKFNYGFIYDGDYMLD 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + + +    P+++T ED  E + HGG  V   ILE + K    R A  GEF++RAF NG+
Sbjct: 63  EAMTVRMKGPKTYTCEDVVEINCHGGYLVTQKILELVLK-KGARHAEKGEFTKRAFMNGR 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AE++ D+I  +TE    LS+E + G+L          L  + + +   LD+ EE 
Sbjct: 122 IDLSQAEAVMDIIQGKTEKSISLSLEQLRGDLRDKIQNLKKLLLDVTAHVNVVLDYPEE- 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +       + +++  +  +I+  I+    G+ I+ G K  I+G  N GKS+L N+L K+
Sbjct: 181 GIDEPLPAHLRDNLENVHTEINKLINSYDKGKKIKEGIKTAIIGKPNVGKSTLLNSLLKE 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT IPGTTRD++   +++ G  + + DTAGIRET+D+VE  G++++   +E +DLI
Sbjct: 241 ERAIVTHIPGTTRDIIEEVINVRGIPLVLVDTAGIRETEDLVENIGVEKSKEIIEKSDLI 300

Query: 303 LLL--------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE-- 352
           L +        K+ +   E+    N   I +  K DL    T E    I  F GE LE  
Sbjct: 301 LFVLDASRELEKDDHQIIELIRENNKKAIILLNKIDLSRKITREN---IDFFDGEILEIS 357

Query: 353 ------------ELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
                        + N I +  + +  +KL  +   HK  L    + V    +    + +
Sbjct: 358 AKEETGIEEMEERIYNYILEEDVEDSSEKLVITNIRHKSALEKTKEAVE--NIFETIDSE 415

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D+I+ +L+ A  SL +ITG +  E +LD +FS FC+GK
Sbjct: 416 MPMDLISVDLKEALDSLSEITGEISSEDILDHVFSNFCVGK 456


>gi|315585839|gb|ADU40220.1| tRNA modification GTPase TrmE [Helicobacter pylori 35A]
          Length = 450

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 142/454 (31%), Positives = 230/454 (50%), Gaps = 25/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AIS+I++SG S   + + + +K+   PR A +R  F  +G +LDK L
Sbjct: 3   DTIAAIATPLGKGAISVIKISGNSALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKVL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +  + L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLNDILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +F ++  LN    L+  I+S    +    + +    G+ + I+G  NAGKSSL NA+  +
Sbjct: 181 DFLNEVSLN----LEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLE 236

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D++
Sbjct: 237 ERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIV 296

Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           L + +++   E      ID         I +  K+DL      E            LE  
Sbjct: 297 LGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETN 356

Query: 355 INKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDIIA 406
               K+ L +  +K+    P     +K  L  L+Q         E+ +       L++ +
Sbjct: 357 TLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIFELQNAKNHLETLELFS 416

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 417 YHLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450


>gi|207091818|ref|ZP_03239605.1| tRNA modification GTPase TrmE [Helicobacter pylori HPKX_438_AG0C1]
          Length = 450

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 146/457 (31%), Positives = 238/457 (52%), Gaps = 31/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T +   AISII++SG +   V + + +K+   PR A +R  F  DG +LDK L
Sbjct: 3   DTIAAIATPSGKGAISIIKISGHNALNVLKQLTQKQDFTPRYAYVRDIFS-DGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +  + L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNDLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241
           +F  +   N    I   K+ +    +Q +     RN G+ + I+G  NAGKSSL NA+  
Sbjct: 181 DFLKEVSFNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 235

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+
Sbjct: 236 EERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDI 295

Query: 302 ILLLKEINS---KKEISFPKNID-----FIFIGTKSDLYSTYTEEY--DHLISSFTGEGL 351
           IL + +++    K++ +  + ++      I +  K+DL      E    HL   ++   L
Sbjct: 296 ILGVFDLSKPLEKEDFNLIETLNRAKKPCIVVLNKNDLAPKLELEILKSHLKIPYS--LL 353

Query: 352 EELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLD 403
           E      K+ L +  +K+    P     +K  L  L+Q         E+ +       L+
Sbjct: 354 ETNTLNSKACLKDLGQKISAFFPKLDTQNKLLLTSLAQKTALENAITELQNAKNHLETLE 413

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + + +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 414 LFSYHLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|257461373|ref|ZP_05626469.1| tRNA modification GTPase TrmE [Campylobacter gracilis RM3268]
 gi|257441096|gb|EEV16243.1| tRNA modification GTPase TrmE [Campylobacter gracilis RM3268]
          Length = 582

 Score =  172 bits (436), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 168/302 (55%), Gaps = 10/302 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T      I I+R+SG     +   +  +    PR A+L   F   G    + +
Sbjct: 3   ETIAAIATAHGIGGICIVRISGEEALSIALSLSHRSSLRPRYATLVNLFDASGEAFGEAI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           LI F +P SFTGED  E   HGG    +  L+ +  +   R+ANPGEFS+RAF NGK+DL
Sbjct: 63  LIYFKAPHSFTGEDVVEVQTHGGFTASSLALDAVLAL-GARIANPGEFSKRAFLNGKMDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182
            +AE+++DLI+S ++   ++    + GEL+         L    +F+E  +D++E++   
Sbjct: 122 SKAEAISDLINSRSQSAAKILARNLRGELADFVANLRAALVKTLAFVEVCIDYAEDDLPS 181

Query: 183 DV-QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           DV QN  S+E+L+  +     I+  IS+ + G I   G+K+ I+G  N GKSS+ N++  
Sbjct: 182 DVLQN--SQEMLSQNIASLEKIT-RISRSRRGLI--EGFKVAIVGKPNVGKSSILNSMLS 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
              AIV+D  GTTRD++   L +  +L++I DTAGIR +   +E  GI  +      AD+
Sbjct: 237 FSRAIVSDEAGTTRDLIEESLQIGTHLIRIVDTAGIRHSGSKLESIGISYSLRAASEADV 296

Query: 302 IL 303
           IL
Sbjct: 297 IL 298


>gi|157781579|gb|ABV72144.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           canis]
          Length = 270

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/271 (36%), Positives = 161/271 (59%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFI-CKKKKPFPRKASLRYFFG--LDGR---ILDKG 64
           +ST     AISI+RLSG     + + +    KK     AS    +G  +D R   +LD+ 
Sbjct: 1   ISTPPGEGAISIVRLSGEDAVSIADLVFSAGKKQLCDVASHTIHYGHIIDRRREQLLDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGG+ V N +L+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVTVMRAPKTFTREDVIEINCHGGMVVANQVLQLLLR-EGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+   +L+++ + G LS L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMQLAIQQLDGNLSQLIRTLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L    F++  I + +   + G+I+R G    I+G  N GKSSL N L K+D 
Sbjct: 180 EELTTQLLLEKARFVQAQIQNLLVTAQQGKILREGLSTAIIGRPNVGKSSLLNHLLKEDK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLVDTA 270


>gi|108563803|ref|YP_628119.1| tRNA modification GTPase TrmE [Helicobacter pylori HPAG1]
 gi|123073715|sp|Q1CRH7|MNME_HELPH RecName: Full=tRNA modification GTPase mnmE
 gi|107837576|gb|ABF85445.1| putative thiophene/furan oxidation protein [Helicobacter pylori
           HPAG1]
          Length = 461

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 148/458 (32%), Positives = 231/458 (50%), Gaps = 33/458 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T +   AISII++SG +   + + + KK+   PR A +R  F  DG +LDK L
Sbjct: 14  DTIAAIATPSGKGAISIIKISGHNALNILKQLTKKQDFTPRYAYVRDIFS-DGVLLDKAL 72

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 73  VIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 131

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 132 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARSDLLKLLASSEVLIDYSEEDIPS 191

Query: 186 NFSSKEVLN---DILFLKN--DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +F  +   N    I   K+  D S+   Q         G+ + I+G  NAGKSSL NA+ 
Sbjct: 192 DFLKEVSFNLEKQIASFKDLLDFSNAQKQK------NKGHALSIVGKPNAGKSSLLNAML 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D
Sbjct: 246 LEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCD 305

Query: 301 LILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEY--DHLISSFTGEG 350
           +IL + +++   E      ID         I +  K+DL      E    HL   ++   
Sbjct: 306 IILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKNDLAPKLELEILKSHLKIPYS--I 363

Query: 351 LEELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGL 402
           LE      K+ L +  +K+    P     +K  L  L+Q         E+ +       L
Sbjct: 364 LETNTLNSKACLKDLGQKISAFFPKLDTQNKLLLTSLAQKTALENAITELQNAKNHLETL 423

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ + +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 424 ELFSYHLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 461


>gi|15594524|ref|NP_212313.1| tRNA modification GTPase TrmE [Borrelia burgdorferi B31]
 gi|195941910|ref|ZP_03087292.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 80a]
 gi|216264582|ref|ZP_03436574.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 156a]
 gi|218249887|ref|YP_002374707.1| tRNA modification GTPase TrmE [Borrelia burgdorferi ZS7]
 gi|221217543|ref|ZP_03589013.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 72a]
 gi|223889248|ref|ZP_03623836.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 64b]
 gi|224532855|ref|ZP_03673470.1| tRNA modification GTPase TrmE [Borrelia burgdorferi WI91-23]
 gi|225548539|ref|ZP_03769587.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 94a]
 gi|226320914|ref|ZP_03796465.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 29805]
 gi|226321497|ref|ZP_03797023.1| tRNA modification GTPase TrmE [Borrelia burgdorferi Bol26]
 gi|3915895|sp|P53364|MNME_BORBU RecName: Full=tRNA modification GTPase mnmE
 gi|226704779|sp|B7J1B2|MNME_BORBZ RecName: Full=tRNA modification GTPase mnmE
 gi|2688058|gb|AAC66556.1| thiophene and furan oxidation protein (thdF) [Borrelia burgdorferi
           B31]
 gi|215981055|gb|EEC21862.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 156a]
 gi|218165075|gb|ACK75136.1| tRNA modification GTPase TrmE [Borrelia burgdorferi ZS7]
 gi|221192606|gb|EEE18823.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 72a]
 gi|223885281|gb|EEF56383.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 64b]
 gi|224512244|gb|EEF82630.1| tRNA modification GTPase TrmE [Borrelia burgdorferi WI91-23]
 gi|225370802|gb|EEH00237.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 94a]
 gi|226232686|gb|EEH31439.1| tRNA modification GTPase TrmE [Borrelia burgdorferi Bol26]
 gi|226233686|gb|EEH32416.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 29805]
 gi|312149716|gb|ADQ29787.1| tRNA modification GTPase TrmE [Borrelia burgdorferi N40]
          Length = 464

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 144/467 (30%), Positives = 242/467 (51%), Gaps = 43/467 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGLD 57
           + I A++T  L SA+ +IR SG S       I K  K F   ++L         Y + LD
Sbjct: 9   DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALNSASGNTIHYGYILD 62

Query: 58  ---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
              G  +D+ ++ ++ +P+SFTG+D+ E   HG +  +  I++   K    R+A PGEF+
Sbjct: 63  SENGCKVDEVVVCLYRAPKSFTGQDAIEVMAHGSVIGIKKIIDLFLK-SGFRMAEPGEFT 121

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF   KIDL +AE++ ++I ++T     L++  +SG L          + +  S +  
Sbjct: 122 LRAFLAKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGALFVKIDAIKKSILNFLSAVSV 181

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LD+    +V +       + IL  K ++   I+  K+ E I NG  +V+ G  NAGKSS
Sbjct: 182 YLDY----EVDDHEISIPFDLILSSKAELKKLINSYKVYEKIDNGVALVLAGSVNAGKSS 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           LFN   KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++  
Sbjct: 238 LFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNS 297

Query: 295 EVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH----- 341
            ++ A L++ + +++S   K +  F      N   +F+  K DL  +  TEE+       
Sbjct: 298 LIKEASLVIYVIDVSSNLTKDDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSKVLN 357

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMA 393
                +IS+   EG++ L +KI++++S +  ++     I S  R +  L +     L++ 
Sbjct: 358 SSNLIMISTKNLEGIDILYDKIRALISYERVEIGLDDIIISSNRQMQLLEKAYALILDLL 417

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S  ++    D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 418 SKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|46121683|ref|XP_385396.1| hypothetical protein FG05220.1 [Gibberella zeae PH-1]
          Length = 436

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/439 (30%), Positives = 204/439 (46%), Gaps = 82/439 (18%)

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADL 134
           +D  E HVHGG A V  +L  + K      +R A PGEF++RAF N ++DL + ESL+D 
Sbjct: 4   DDVLELHVHGGSATVKAVLAAIPKCATAHRIRYAEPGEFTKRAFFNNRLDLAQIESLSDT 63

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF--SSKEV 192
           +++ETE QRR ++ G SG L   Y  W ++L   R  IEA +DFSE+   Q+F  S  E+
Sbjct: 64  LAAETEQQRRAAVRGNSGSLGRQYEAWREQLLLTRGEIEALIDFSED---QHFDESQAEL 120

Query: 193 LNDILF----LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           L ++      + + I  H    +  E++RNG +I +LG  N GKSSL N +  ++ +IV+
Sbjct: 121 LQNVTAQVARMLHSIELHEQGSQRSELLRNGIRIALLGPPNVGKSSLMNLIVGREASIVS 180

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD------------IVEKEGIKRTFLEV 296
              GTTRD++   LD+ GYL   +DTAG R                 VE+EGI+R     
Sbjct: 181 GEAGTTRDIVEASLDIRGYLCSFADTAGFRSQSSQITSEAESGAIGAVEEEGIRRAKQRA 240

Query: 297 ENADLILLLKEINSKKEISFPK-----------NIDFIFIGTKSDLYSTYTEEYDHLISS 345
             +DL+++L  +       F +             D + +  K D       E+  L+  
Sbjct: 241 LESDLVIVLASVEKGPRGFFLQYDEETLDLAAGAEDCLVVVNKQDAVDKV--EFGKLVQK 298

Query: 346 F-------------------------TGEGLEELINKIKSILSN---KFKKLPFSIPSHK 377
           F                         TG    +    I+++++     F+++  S+P   
Sbjct: 299 FRQNAQLRAPKLAAAELVSISCKEAQTGSWESKDPGGIQAVITRLVESFERMT-SMPVDL 357

Query: 378 RHLYHLSQTVRYL-------------EMASLNEKDCGLDIIAENLRLASVSLGKITG--- 421
           + L  +++  R L             E       D    + AE LR A+  L +ITG   
Sbjct: 358 QDLLGVTERQRQLLIKCRQHLEDFMVEATPEEGMDADTVLAAEYLRYAADCLARITGRGE 417

Query: 422 CVDVEQLLDIIFSKFCIGK 440
             DVE +L +IF KFC+GK
Sbjct: 418 FGDVEDVLGVIFEKFCVGK 436


>gi|225549804|ref|ZP_03770768.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 118a]
 gi|225369612|gb|EEG99061.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 118a]
          Length = 464

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 144/467 (30%), Positives = 242/467 (51%), Gaps = 43/467 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGLD 57
           + I A++T  L SA+ +IR SG S       I K  K F   ++L         Y + LD
Sbjct: 9   DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALNSASGNTIHYGYILD 62

Query: 58  ---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
              G  +D+ ++ ++ +P+SFTG+D+ E   HG +  +  I++   K    R+A PGEF+
Sbjct: 63  SENGCKVDEVVVCLYRAPKSFTGQDAIEVMAHGSVIGIKKIIDLFLK-SGFRMAEPGEFT 121

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF   KIDL +AE++ ++I ++T     L++  +SG L          + +  S +  
Sbjct: 122 LRAFLAKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGALFVKIDAIKKSILNFLSAVSV 181

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LD+    +V +       + IL  K ++   I+  K+ E I NG  +V+ G  NAGKSS
Sbjct: 182 YLDY----EVDDHEISIPFDLILSSKAELKKLINSYKVYEKIDNGVALVLAGSVNAGKSS 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           LFN   KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++  
Sbjct: 238 LFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNS 297

Query: 295 EVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH----- 341
            ++ A L++ + +++S   K +  F      N   +F+  K DL  +  TEE+       
Sbjct: 298 LIKEASLVIYVIDVSSNLTKDDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSKVLN 357

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMA 393
                +IS+   EG++ L +KI++++S +  ++     I S  R +  L +     L++ 
Sbjct: 358 SSNLIMISTKNLEGIDILYDKIRALISYERVEIGVDDIIISSSRQMQLLEKAYALILDLL 417

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S  ++    D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 418 SKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|308185215|ref|YP_003929348.1| tRNA modification GTPase TrmE [Helicobacter pylori SJM180]
 gi|308061135|gb|ADO03031.1| tRNA modification GTPase TrmE [Helicobacter pylori SJM180]
          Length = 450

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 148/462 (32%), Positives = 239/462 (51%), Gaps = 41/462 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AISII++SG +   + + + +K+   PR A +R  F  +G +LDK L
Sbjct: 3   DTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    + + RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGSPLLAQHILQACLNLGS-RLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +  + L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNDLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241
           +F  +  LN    I   K+ +    +Q +     RN G+ + I+G  NAGKSSL NA+  
Sbjct: 181 DFLKEVSLNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 235

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+
Sbjct: 236 EERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDI 295

Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDL--------YSTYTEEYDHLISS 345
           IL + +++   E      ID         I +  K+DL          +Y +    L+ +
Sbjct: 296 ILGVFDLSKPLEKEDFNLIDALNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLKT 355

Query: 346 FT---GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY----LEMASLNEK 398
            T      L++L  KI +     F KL      +K  L  L+QT       +E+ +    
Sbjct: 356 NTLNSKACLKDLSQKISAF----FPKLD---TQNKLLLTSLAQTTALENAIIELQNAKSH 408

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              L++ + ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 409 LDTLELFSYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|315608192|ref|ZP_07883184.1| tRNA modification GTPase TrmE [Prevotella buccae ATCC 33574]
 gi|315250161|gb|EFU30158.1| tRNA modification GTPase TrmE [Prevotella buccae ATCC 33574]
          Length = 512

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 192/344 (55%), Gaps = 13/344 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRY--FFGLDGRI 60
           TI A++T A   AI ++R+SG    ++ + I K    +K    +  +L Y      +   
Sbjct: 9   TICALATPA-GGAIGVVRVSGSEAIKIADHIFKAKSGRKLANAKGNTLHYGEIVNHNRET 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +  V+ +P S+TGED+ EF  HG   ++  +L  L +    R A PGE+++RA+ N
Sbjct: 68  IDDVMASVYRAPFSYTGEDAVEFSCHGSQYILQEVLHLLIQN-GCRQAEPGEYTQRAYLN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI+S      ++++  + G  S+      D+L  + S +E +LDFS+
Sbjct: 127 GKMDLSQAEAVADLIASTNRATHKMAISQLKGHFSNELILLRDRLLKMTSLLELELDFSD 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+++    K++L     +   I+S I   + G  ++NG  + I+G +N GKS+L N L 
Sbjct: 187 HEELEFADRKQLLELACQIDEKITSLIQSFETGNALKNGIPVAIVGKTNVGKSTLLNRLL 246

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV+DI GTTRD +     + G   +  DTAGIR+T+D VE+ GI RT+ +++ A 
Sbjct: 247 HEERAIVSDIHGTTRDTIEDTTLINGVAFRFIDTAGIRKTEDEVERIGIDRTYQKIDQAT 306

Query: 301 LILLLKEINS---KKEISFPKNI--DFIFIGTKSDLYSTYTEEY 339
           +++ + + +    ++E    K I  + I +  K D+  T++  Y
Sbjct: 307 VVVWMIDTSPSALEQEDMRSKCIGKNVILVHNKVDIALTHSPSY 350


>gi|317181135|dbj|BAJ58921.1| tRNA modification GTPase TrmE [Helicobacter pylori F32]
          Length = 450

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 141/454 (31%), Positives = 228/454 (50%), Gaps = 25/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AIS+I++SG +   + + + +K+   PR A +R  F  +G +LDK L
Sbjct: 3   DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQVCLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLNDILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +F  +  LN    L+  I+S    +    + +    G+ + I+G  NAGKSSL NA+  +
Sbjct: 181 DFLDEVSLN----LEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLE 236

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D++
Sbjct: 237 ERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADTIERLGIEKSLKSLENCDIV 296

Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           L + +++   E      ID         I +  K+DL      E            LE  
Sbjct: 297 LGVFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETN 356

Query: 355 INKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDIIA 406
               K+ L +  +K+    P     +K  L  L+Q         E+ +       L++ +
Sbjct: 357 TLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIFELQNAKNHLETLELFS 416

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 417 YHLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450


>gi|257462448|ref|ZP_05626861.1| tRNA modification GTPase TrmE [Fusobacterium sp. D12]
          Length = 404

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/399 (33%), Positives = 225/399 (56%), Gaps = 22/399 (5%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L+ +  +P ++T ED  E + HGG  +   ILE L      RLA  GEF+RRAF 
Sbjct: 10  IVDEVLVSIMKAPNTYTREDIVEINCHGGYLITEKILE-LVLSSGARLAEVGEFTRRAFF 68

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           +G+IDL +AE++ D+I  +TE    +S+  + G+L          + ++ + I   LD+ 
Sbjct: 69  HGRIDLTQAEAVMDIIHGKTEKSLSVSINQLRGDLKEKIISLKKAILNLAAHINVVLDYP 128

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE  ++    + +LN++  +  +I   IS  + G++I+ G K VI+G  N GKSSL N++
Sbjct: 129 EEG-IEEPIPENLLNNLRKVSIEIQELISSYQKGKMIKEGVKTVIIGKPNVGKSSLLNSI 187

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            +++ AIVT + GTTRDV+   ++++G  + + DTAGIR+T D VE  G+ ++   ++ A
Sbjct: 188 LREERAIVTQVAGTTRDVIEEVINIKGIPLILVDTAGIRDTTDFVENIGVMKSKEFLQKA 247

Query: 300 DLILLLKEIN---SKKE----ISFPKNIDFIFIGTKSDL-----YSTYTEEYDHL-ISSF 346
           DL+L + + +   SK++    IS  +N   I I  K+DL      S+ ++  + + +S+ 
Sbjct: 248 DLVLFVLDASQELSKEDREIYISLQENQKVIGILNKTDLEKKIQVSSLSKIKNWIEVSAM 307

Query: 347 TGEGLEELINKI-KSILSNKF----KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
              G+EE+  KI + IL  K     +KL  +   HK  L   +  ++   + S  E+   
Sbjct: 308 KCIGIEEMEEKIYQYILQEKVEENSQKLILTNIRHKAALEKTNGAIK--NIFSTVEQGLP 365

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++A +++ A  SL +ITG +  E +LD IF  FC+GK
Sbjct: 366 MDLMAVDIKEALDSLSEITGEISTEDVLDHIFHNFCVGK 404


>gi|302781180|ref|XP_002972364.1| hypothetical protein SELMODRAFT_97275 [Selaginella moellendorffii]
 gi|300159831|gb|EFJ26450.1| hypothetical protein SELMODRAFT_97275 [Selaginella moellendorffii]
          Length = 469

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 141/485 (29%), Positives = 235/485 (48%), Gaps = 67/485 (13%)

Query: 6   ETIFAVSTGAL--PSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL---- 56
           ETI A+ T       A++I+R+SGPS   V + I    +KKK  P+  S R  +G     
Sbjct: 2   ETIAAIVTPLCGKQGAVAIVRMSGPSAVSVAQAIFRPLRKKKWIPQ--SHRVVYGTIIEY 59

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               I+D+ +++   +P S+T ED  E   HGG   V  IL+ L      RLA PGEF+ 
Sbjct: 60  PKETIIDEVIIVPMLAPRSYTREDVVEIQCHGGDVCVRRILD-LCLQHGARLAQPGEFTL 118

Query: 116 RAFENGKIDLLEAESLADLISSETE---------MQRRLSMEGMSGELSSLYGQWIDKLT 166
           RAF NG+IDL +AE++A L+S++T          +Q R    G+S  + S+  Q I+ L 
Sbjct: 119 RAFLNGRIDLSQAENVAQLVSAKTASAAETALAGLQARKIFGGLSNFVRSMRSQCIELLA 178

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            I    +A +DF  E+++      +++  +  +   +   +     G ++++G ++ I+G
Sbjct: 179 EI----DAHVDF--EDELAPLDVDKIMEAVGSVSAQVEQALETAARGRLLQSGIQVAIVG 232

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N GKSSL N  ++ + AIVTD+ GTTRD++  D+ + G  V++ DTAGIR T+D VE 
Sbjct: 233 RPNVGKSSLLNGWSQSERAIVTDVAGTTRDIVEADVVVSGVPVRLLDTAGIRITEDPVES 292

Query: 287 -EGIKRTFLEVENADL----------------------------ILLLKEINS--KKEIS 315
             G++R+      AD+                            IL++ +I+   + +++
Sbjct: 293 IAGVQRSQAAATGADVLVMVINACDGWTTGDKLIFDHTLQQQPWILVMNKIDQVCEGDVT 352

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            P+++   F    S        + D L ++        LI     + S   +    +   
Sbjct: 353 IPEDVRAAFSAVVSTCAVKEALDIDKLDTALA-----ALIAAGGDVFSAGQQHWAVN-ER 406

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435
            K  L    Q +  L  ++  E    +D+   +LR   ++LG+I+G    E++L  IFS+
Sbjct: 407 QKEQLIRAKQALERLRQSAHEE--LPVDLWTVDLRDTILALGQISGDDVSEEVLANIFSR 464

Query: 436 FCIGK 440
           FCIGK
Sbjct: 465 FCIGK 469


>gi|308064209|gb|ADO06096.1| tRNA modification GTPase TrmE [Helicobacter pylori Sat464]
          Length = 450

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 143/454 (31%), Positives = 227/454 (50%), Gaps = 25/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AIS+I++SG +   + + + +K+   PR A +R  F  +G +LDK L
Sbjct: 3   DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLNDILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +F  +  LN    L+  I+S    +    + +    G+ + I+G  NAGKSSL NA+  +
Sbjct: 181 DFLDEVSLN----LEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLE 236

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+I
Sbjct: 237 ERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDII 296

Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           L + +++   E      ID         I +  K+DL      E            LE  
Sbjct: 297 LGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETN 356

Query: 355 INKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDIIA 406
               K+ L +  +K+    P     +K  L  L+Q         E+ +       L+  +
Sbjct: 357 TLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIFELQNAKNHLETLEFFS 416

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  A  SL  +T   +  Q+LD +FS+FC+GK
Sbjct: 417 YHLLSAIESLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|332674218|gb|AEE71035.1| tRNA modification GTPase TrmE [Helicobacter pylori 83]
          Length = 450

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 146/456 (32%), Positives = 233/456 (51%), Gaps = 29/456 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AIS+I++SG +   + + + +K+   PR A +R  F  +G +LDK L
Sbjct: 3   DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESALNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLNDILF-LKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +F     L+++ F L+  I+S    +    + +    G+ + I+G  NAGKSSL NA+  
Sbjct: 181 DF-----LDEVSFNLEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLL 235

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+
Sbjct: 236 EERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDI 295

Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           +L + +++   E      ID         I +  K+DL      E            LE 
Sbjct: 296 VLGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLVPKLELEILKSYLKIPYSLLET 355

Query: 354 LINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASL---NEKDC--GLDI 404
                K+ L +  +K+    P     +K  L  L+Q    LE A     N KD    L++
Sbjct: 356 NTLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTA-LENAIFELQNAKDHLETLEL 414

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 415 FSYHLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|308062715|gb|ADO04603.1| tRNA modification GTPase TrmE [Helicobacter pylori Cuz20]
          Length = 450

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 143/456 (31%), Positives = 228/456 (50%), Gaps = 29/456 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T +   AIS+I++SG +   + + + +K+   PR A +R  F  +G +LDK L
Sbjct: 3   DTIAAIATPSGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPN 180

Query: 186 NF---SSKEVLNDILFLKN--DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +F    S+ +   I   K+  D S+   Q         G+ + I+G  NAGKSSL NA+ 
Sbjct: 181 DFLDEVSQNLEKQIASFKDLLDFSNMQKQK------NKGHALSIVGKPNAGKSSLLNAML 234

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D
Sbjct: 235 LEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCD 294

Query: 301 LILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           ++L + +++   E      ID         I +  K+DL      E            LE
Sbjct: 295 IVLGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELETLKSYLKIPYSLLE 354

Query: 353 ELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDI 404
                 K+ L +  +K+    P     +K  L  L+Q         E+ +       L++
Sbjct: 355 TNTLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIFELQNAKNHLETLEL 414

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +L  A  SL  +T   +  Q+LD +FS+FC+GK
Sbjct: 415 FSYHLLSAIESLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|262038122|ref|ZP_06011523.1| tRNA modification GTPase TrmE [Leptotrichia goodfellowii F0264]
 gi|261747846|gb|EEY35284.1| tRNA modification GTPase TrmE [Leptotrichia goodfellowii F0264]
          Length = 455

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 153/463 (33%), Positives = 247/463 (53%), Gaps = 39/463 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILD 62
           +TI A+ST      I IIR+SG   F++   I   K P       ++ +G    +G+I+D
Sbjct: 4   DTIAAISTPKGEGGIGIIRISGDKSFEILSKIFNMKNPNKDLGFYKFNYGFVHDNGKIID 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + + +   +P+++T ED  E + HGG  +   +LE + K    R A  GEF++RAF NG+
Sbjct: 64  EVMTVRMKAPKTYTCEDIVEINCHGGNLITEKVLELVLK-NGARHAEQGEFTKRAFMNGR 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE- 181
           IDL +AE++ DLI  +TE    LSM+ + G+L     ++   L  + + +   LD+ EE 
Sbjct: 123 IDLSQAEAVMDLIQGKTEKSISLSMDQLRGDLKEKINKFKKALLDVTAHVNVVLDYPEEG 182

Query: 182 -EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +D    + +E L  +    N +   I     G+ I+ G K VI+G  N GKS+L N+L 
Sbjct: 183 IDDPLPENLRENLEKVYKEANIL---IESYDKGKKIKEGIKTVIVGKPNVGKSTLLNSLL 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIVT IPGTTRD++   ++++G  + + DTAGIR+T+DIVE  G++++   +E AD
Sbjct: 240 KEERAIVTHIPGTTRDIIEEIINIKGIPLVLVDTAGIRKTEDIVENIGVEKSKQFIEKAD 299

Query: 301 LILLLKEINSKKEISFPKNIDFI-----------FIGTKSDL-----YSTYTEEYDHLIS 344
           LILL+  +++ KE+   ++I+ I            +  K DL      S Y  E    IS
Sbjct: 300 LILLV--LDASKELE-KEDIEVIEKIKKNNKKTIVLLNKIDLERKIDLSNYDLENILEIS 356

Query: 345 SFTGEGLEELINKIKSIL-----SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           +    G++E+  KI S +      N  +KL  +   HK  L    + V  +        D
Sbjct: 357 AKDNIGIDEMEEKIYSYIVEEDVENTSEKLIITNIRHKTALEKTKEAVNNI----FETID 412

Query: 400 CG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G  +D+I+ +L+ A  +L +ITG +  E +LD +F  FC+GK
Sbjct: 413 NGMPMDLISVDLKEALDALSEITGEISSEDILDHVFGNFCVGK 455


>gi|308273513|emb|CBX30115.1| tRNA modification GTPase mnmE [uncultured Desulfobacterium sp.]
          Length = 460

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 149/463 (32%), Positives = 234/463 (50%), Gaps = 30/463 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRYFFGLD- 57
           +K+TI A+ST      I II++SG     +   I +K K      F     L +   +D 
Sbjct: 2   DKDTIAAISTPVGSGGIGIIKISGDKAKHITSLIFRKSKKNEVNYFKESHKLYHGHIIDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
              +ILD+ L+ V  +P S+TGED  E +VH G  ++  IL  + +  + RLA PGEF++
Sbjct: 62  DSNQILDEVLVSVMLAPHSYTGEDVIEINVHSGTFILKTILNIIIR-KDARLAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I+S +     ++   + G L +     +  L  I   IEA 
Sbjct: 121 RAFLNGRIDLTQAEAIIDIINSNSLKALEIANAQVDGVLRNEIESMLTVLNDIIVKIEAV 180

Query: 176 LDFSEEEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +DF +E +  N      VL + + +K  ++  IS    G +IR G K+VI G  N GKSS
Sbjct: 181 IDFPDETENINIDEYISVLENSIIIK--LNKLISDYNEGHVIREGLKVVIAGRPNVGKSS 238

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L KK+ +IVT IPGTTRD++   + + G    I DTAG   T D VE+ GI++   
Sbjct: 239 LMNVLLKKERSIVTSIPGTTRDIIDETIIISGIPAVIFDTAGFHNTVDPVEEIGIQKALE 298

Query: 295 EVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLY--STYTEEYDHL---- 342
            + N+D+IL + ++      + +  +   K+ + I +  K DL   ++  E    L    
Sbjct: 299 IINNSDIILFMLDVINPFTEDDRTLLEIVKDKELIVVLNKIDLLNENSLIEINKELKCFP 358

Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
              +SS    G++ L   IK I +         I  + R    +   ++ ++ + LN   
Sbjct: 359 IVRVSSLCNTGIDVLKETIKEITTKSVHSDCSCIVPNLRQKTAIENCLKNMK-SFLNGIK 417

Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            GL  + I+ ++  A   L +I G      +LD IF+KFCIGK
Sbjct: 418 AGLPYEFISLDIHEAITELSQIVGIKIKLNILDQIFNKFCIGK 460


>gi|297380695|gb|ADI35582.1| tRNA modification GTPase TrmE [Helicobacter pylori v225d]
          Length = 461

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 142/454 (31%), Positives = 227/454 (50%), Gaps = 25/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AIS+I++SG +   + + + +K+   PR A +R  F  +G +LDK L
Sbjct: 14  DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 72

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 73  VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 131

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 132 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 191

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKK 242
           +F ++  LN    L+  I+S           R    G+ + I+G  NAGKSSL NA+  +
Sbjct: 192 DFLNEVSLN----LEKQIASFKDLLDFSNTQRQKNKGHALSIVGKPNAGKSSLLNAMLLE 247

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D++
Sbjct: 248 ERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIV 307

Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           L + +++   E      ID         I +  K+DL      E            LE  
Sbjct: 308 LGVFDLSKPLEKEDFNLIDALNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETN 367

Query: 355 INKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDIIA 406
               K+ L +  +K+    P     +K  L  L+Q         E+ +       L++ +
Sbjct: 368 TLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIFELQNAKNHLETLELFS 427

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 428 YHLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 461


>gi|225016766|ref|ZP_03705958.1| hypothetical protein CLOSTMETH_00678 [Clostridium methylpentosum
           DSM 5476]
 gi|224950434|gb|EEG31643.1| hypothetical protein CLOSTMETH_00678 [Clostridium methylpentosum
           DSM 5476]
          Length = 454

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 144/465 (30%), Positives = 239/465 (51%), Gaps = 44/465 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGRIL 61
           TI A++T      IS+IRLSG    ++ +  F     KP  +    R  +G        +
Sbjct: 3   TIAAIATPHAVGGISVIRLSGDKAIEIAQKIFHPLSGKPLQKMDGYRAAYGTINNQAGEI 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D G+ +VF +P+S+TGED  E   HGG+ +   +L   A     ++A  GEF++RAF N 
Sbjct: 63  DDGVALVFHAPKSYTGEDVVEISCHGGLYISRQVLRA-ALEAGAKMAENGEFTKRAFLNK 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+ L +AES+ +LI++++E   + ++  M G L     +  D+L  I   ++A +D+ EE
Sbjct: 122 KMTLTQAESVINLINAQSEQAAKSALTTMGGALYKEIRRICDRLITIAGHLDAWVDYPEE 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSH------ISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           E  +  +          LK    SH      +S+   G I + G +  I+G  N GKS+L
Sbjct: 182 EIEEIEADS-------LLKQLKESHQALVGLLSRYDTGRIYQQGVETAIVGKPNVGKSTL 234

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGIRETDDIVEKEGIKRTFL 294
            N LA    +IVT+I GTTRDV+   +D+ G ++ +++DTAGIRET+D+VE+ G+ R   
Sbjct: 235 MNLLAGYQKSIVTEIAGTTRDVVEEAVDIGGGIILRLADTAGIRETEDLVERIGVDRAKE 294

Query: 295 EVENADLILLL---KEINSKKEISFPKNID---FIFIGTKSDLYSTYTEEYDHL------ 342
            +++A L+L L    E   +++ SF + +     I +  KSDL +    + D L      
Sbjct: 295 RIQSASLVLALFDSSEPVEEQDASFIEQLSGFPVIAVVNKSDLPARI--DLDLLKKKFRW 352

Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNE 397
              IS+   EG+E+L   I  +L  + +++  + P  +++R          YL  A ++ 
Sbjct: 353 VVSISAKQNEGIEQLKESIFDLL--QMEEIDGNAPMLANERQRVCAQNAENYLGEA-IDA 409

Query: 398 KDCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              G  LD +  ++  A   L ++TG    E ++D +FS FC+GK
Sbjct: 410 LKVGFTLDAVTVSVESAIQELLELTGERVTEAVVDEVFSHFCVGK 454


>gi|261838727|gb|ACX98493.1| thiophene/furan oxidation protein [Helicobacter pylori 51]
          Length = 461

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 145/455 (31%), Positives = 231/455 (50%), Gaps = 27/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AIS+I++SG +   + + + +K+   PR A +   F  +G +LDK L
Sbjct: 14  DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVHDIFS-NGVLLDKAL 72

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 73  VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQTCLNL-GARLAKAGEFSKKAFLNHKMDL 131

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +  D L  + +  E  +D+SEE+   
Sbjct: 132 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARDNLLKLLASSEVLIDYSEEDIPS 191

Query: 186 NFSSKEVLNDILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +F  +  L+    L+  I+S    +    + +    G+ + I+G  NAGKSSL NA+  +
Sbjct: 192 DFLDEVSLD----LEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLE 247

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D++
Sbjct: 248 ERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIV 307

Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           L + +++   E      ID         I +  K+DL      E            LE  
Sbjct: 308 LGVFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELETLKSYLKIPYSLLETN 367

Query: 355 INKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASL---NEKDC--GLDII 405
               K+ L +  +K+    P     +K  L  L+Q    LE A     N KD    L++ 
Sbjct: 368 TLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTA-LENAIFELQNAKDHLETLELF 426

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 427 SYHLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 461


>gi|312148439|gb|ADQ31098.1| tRNA modification GTPase TrmE [Borrelia burgdorferi JD1]
          Length = 464

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 241/467 (51%), Gaps = 43/467 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGLD 57
           + I A++T  L SA+ +IR SG S       I K  K F   ++L         Y + LD
Sbjct: 9   DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALNSASGNTIHYGYILD 62

Query: 58  GR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                 +D+ ++ ++ +P+SFTG+D+ E   HG +  +  I++   K    R+A PGEF+
Sbjct: 63  NENDCKVDEVVVCLYRAPKSFTGQDTIEVMAHGSVIGIKKIIDLFLK-SGFRMAEPGEFT 121

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF   KIDL +AE++ ++I ++T     L++  +SG L          + +  S +  
Sbjct: 122 LRAFLAKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGALFVKIDAIKKSILNFLSAVSV 181

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LD+    +V +       + IL  K ++   I+  K+ E I NG  +V+ G  NAGKSS
Sbjct: 182 YLDY----EVDDHEISIPFDLILSSKAELKKLINSYKVYEKIDNGVALVLAGSVNAGKSS 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           LFN   KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++  
Sbjct: 238 LFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNS 297

Query: 295 EVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH----- 341
            ++ A L++ + +++S   K +  F      N   +F+  K DL  +  TEE+       
Sbjct: 298 LIKEASLVIYVIDVSSNLTKDDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSKVLN 357

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMA 393
                +IS+   EG++ L +KI++++S +  ++     I S  R +  L +     L++ 
Sbjct: 358 SSNLIMISTKNLEGIDILYDKIRALISYERVEIGLDDIIISSSRQMQLLEKAYALILDLL 417

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S  ++    D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 418 SKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|302780125|ref|XP_002971837.1| hypothetical protein SELMODRAFT_96586 [Selaginella moellendorffii]
 gi|300160136|gb|EFJ26754.1| hypothetical protein SELMODRAFT_96586 [Selaginella moellendorffii]
          Length = 469

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 139/480 (28%), Positives = 237/480 (49%), Gaps = 57/480 (11%)

Query: 6   ETIFAVSTGAL--PSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGLD--- 57
           ETI A+ T       A++I+R+SGPS   V + I    +KKK  P+   + Y   ++   
Sbjct: 2   ETIAAIVTPLCGKQGAVAIVRMSGPSAVSVAQAIFRPLRKKKWIPQSHKVVYGTIIEYPK 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ +++   +P S+T ED  E   HGG   V  IL+ L      RLA PGEF+ RA
Sbjct: 62  ETIIDEVIIVPMLAPRSYTREDVVEIQCHGGDVCVRRILD-LCLQHGARLAQPGEFTLRA 120

Query: 118 FENGKIDLLEAESLADLISSETE---------MQRRLSMEGMSGELSSLYGQWIDKLTHI 168
           F NG+IDL +AE++A L+S++T          +Q R    G+S  + S+  Q I+ L  I
Sbjct: 121 FLNGRIDLSQAENVAQLVSAKTASAAETALAGLQARKIFGGLSNFVRSMRSQCIELLAEI 180

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
               +A +DF  E+++      +++  +  +   +   +     G ++++G ++ I+G  
Sbjct: 181 ----DAHVDF--EDELAPLDVDKIMEAVGSVSAQVEQALETAARGRLLQSGIQVAIVGRP 234

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK-E 287
           N GKSSL N  ++ + AIVTD+ GTTRD++  D+ + G  V++ DTAGIR T+D VE   
Sbjct: 235 NVGKSSLLNGWSQSERAIVTDVAGTTRDIVEADVVVSGVPVRLLDTAGIRITEDPVESIA 294

Query: 288 GIKRTFLEVENADLILLL----------------KEINSKKEISFPKNIDFIFIGTKSDL 331
           G++R+      AD+++++                  +  K  I     ID +  G    +
Sbjct: 295 GVQRSQAAATGADVLVMVINACDGWTTGDKLIFDHTLQQKPWILVMNKIDQV-CGGDVTI 353

Query: 332 YSTYTEEYDHLISSFT-GEGLEELINKIKSILSNKFKKLPFSIPSHKRH----------L 380
                  +  ++S+    E L+  I+K+ + L+           + ++H          L
Sbjct: 354 PEDVRAAFSAVVSTCAVKEALD--IDKLDTALAALIAAGGDVFSAGQQHWAVNERQKEQL 411

Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               Q +  L  ++  E    +D+   +LR   ++LG+I+G    E++L  IFS+FCIGK
Sbjct: 412 IRAKQALERLRQSAHEE--LPVDLWTVDLRDTILALGQISGDDVSEEVLANIFSRFCIGK 469


>gi|30468066|ref|NP_848953.1| tRNA modification GTPase [Cyanidioschyzon merolae strain 10D]
 gi|75272287|sp|Q85FG3|MNME_CYAME RecName: Full=Probable tRNA modification GTPase mnmE
 gi|30409166|dbj|BAC76115.1| tRNA modification GTPase [Cyanidioschyzon merolae strain 10D]
          Length = 446

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 135/455 (29%), Positives = 230/455 (50%), Gaps = 36/455 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDK 63
           ++TI A++T   PS+++IIRLSG    ++ + IC KK  +     +  +   D  +++D+
Sbjct: 9   QDTIVAIATYLAPSSVAIIRLSGNEAIRLAKSICVKKNHWHSHRIIHTYVQDDQNQLIDE 68

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L++   +P S+T +D  E H HGG+ V   IL+ L      RLA PGEF+ RAF NG++
Sbjct: 69  VLVLPMLAPRSYTRQDVVEIHAHGGVVVAQTILQLLINR-GARLAKPGEFTLRAFINGRL 127

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
            L +AES+ +LI + +    + ++  + G LS+   Q   +L  + + IEA LDF    D
Sbjct: 128 TLTQAESVLELIHAPSVAMAKKALSNLRGALSTQLHQVRSELIQLLAQIEAHLDF----D 183

Query: 184 VQN-FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           + N F     +N +  + N I + ++     +  R G ++ +LG +NAGKS+LFNAL  +
Sbjct: 184 LDNTFVFNSFINSLTNIINQIQNLLNTP--SKFYRYGIQVALLGPANAGKSTLFNALIGE 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + +IVT I GTT DV+   L  +    +  DTAG++E    +E + + +     +  DLI
Sbjct: 242 ERSIVTPIAGTTTDVVEATLQWQQICFRFFDTAGLKEASSEIETKAMAKAQQIAKQCDLI 301

Query: 303 LLLKEINSKKEISFPKNI----DFIFIGTKSDLYSTYTEEY--DHL------ISSFTGEG 350
           L + +  S   +  P  +      + +  K D+ S+   ++  DH       +S+     
Sbjct: 302 LWIIDATSPN-LPIPPYLLNSKPLLVVYNKIDVDSSDVLDHVLDHTSYPTVKVSALYATN 360

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENL 409
           L +L   I    +  F+     I   +  L  L Q  ++L  + S  ++   L+II+ +L
Sbjct: 361 LSQLKQLIWQQATQLFQLDGIYINERQSQL--LQQAKQHLCNLQSALDEGYPLEIISWHL 418

Query: 410 RLASVSLGKITGCVDVEQL----LDIIFSKFCIGK 440
           + A         C+D   +    L+ IFS+FCIGK
Sbjct: 419 KNA-------IQCLDENDVNASTLNAIFSQFCIGK 446


>gi|307638103|gb|ADN80553.1| GTPase and tRNA-U345-formylation enzyme [Helicobacter pylori 908]
 gi|325996704|gb|ADZ52109.1| tRNA modification GTPase [Helicobacter pylori 2018]
 gi|325998296|gb|ADZ50504.1| tRNA modification GTPase [Helicobacter pylori 2017]
          Length = 450

 Score =  169 bits (429), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 145/455 (31%), Positives = 233/455 (51%), Gaps = 27/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AISII++SG +   + + + +K+   PR A +   F  DG +LDK L
Sbjct: 3   DTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVCDIFS-DGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEVQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +  + L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLNDILF-LKNDISS--HISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241
           +F     L+++ F L+  I+S   +      +  RN G+ + I+G  NAGKSSL NA+  
Sbjct: 181 DF-----LDEVSFNLEKQIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLL 235

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+
Sbjct: 236 EERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDI 295

Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           IL + +++   E      ID         I +  K+DL      E            LE 
Sbjct: 296 ILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSTLET 355

Query: 354 LINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDII 405
                K+ L +  +K+    P     +K  L  L+QT       +E+ +       L++ 
Sbjct: 356 NTLNSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQTTALENAIIELQNAKSHLDTLELF 415

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 416 SYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|311359265|gb|ADP94166.1| TrmE [Treponema pallidum subsp. pertenue]
 gi|311705156|gb|ADQ01045.1| TrmE [Treponema pallidum subsp. pertenue]
 gi|311705164|gb|ADQ01052.1| TrmE [Treponema pallidum subsp. pertenue str. Gauthier]
 gi|313505077|gb|ADR64245.1| TrmE [Treponema pallidum]
          Length = 495

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 136/494 (27%), Positives = 230/494 (46%), Gaps = 71/494 (14%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRI-LDKG 64
           I A++T   P+A+ I+R SG S  +       + +   R  +  +  G  LDG+  +D+ 
Sbjct: 12  IVAIATALSPAALGIVRTSGSSSIERVASFFSRAQALTRARAHTFLHGWILDGKTRVDEV 71

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +L+V+ +P SFTGE + E   HGG+  V  +   L      R A  GEFS R+F +GK D
Sbjct: 72  VLLVYRAPHSFTGEHAVEIICHGGVRTVQAVYR-LCLAQGFRAAQRGEFSFRSFFHGKRD 130

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED- 183
           L   E++  L+ + T   ++ ++  +SG L          L    + ++ ++++ E+E+ 
Sbjct: 131 LTRIEAIQSLVDARTCAAQQQAVLHLSGALQQEIAALTRALLAFSATLQGEIEYPEDEET 190

Query: 184 -VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            V +   +E+   +  L+   +    +     + R G +IV+ G  NAGKSSLFNAL  +
Sbjct: 191 RVHDIDMRELEPLVERLRRLRACWQERA----LQRTGVRIVLGGCPNAGKSSLFNALLGQ 246

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIV+ +PGTTRD L  DLDL G  V++ DTAG+R TD+ +E +G+ R+   ++ AD +
Sbjct: 247 DRAIVSSVPGTTRDWLEADLDLSGIPVRLCDTAGLRVTDNPIEAQGVVRSEQLLQGADCV 306

Query: 303 LLLKEINSKKEISFPK-------NIDFIFIGTKSDLYS--------------------TY 335
             +  IN +  +            +  + + T +DL S                    + 
Sbjct: 307 FYI--INGRAGVQAADCAFLSDCAVPLVVVVTHNDLMSMSERTQVCQAVQPFISAPVLSC 364

Query: 336 TEEYDH-------------------------LISSFTGEGLEELINKIKSILSNKFKKLP 370
               D                           +S+ T  GL+ L  +   +L     ++P
Sbjct: 365 ARSQDARGAGEQCLAGGKNGEVRDRAPRAFVCVSAKTHAGLDALRAQTLHLLHG--GQVP 422

Query: 371 F---SIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
           +   S+ S ++++  +   V+ LE A     +  GLD +  +L  A    G +TG V  E
Sbjct: 423 YEELSLGSERQYVL-VDAAVQALEHAQEAYARGFGLDAVVHDLEEALYHCGALTGEVHSE 481

Query: 427 QLLDIIFSKFCIGK 440
            +LD +F K C+GK
Sbjct: 482 DILDALFEKLCVGK 495


>gi|210135618|ref|YP_002302057.1| tRNA modification GTPase TrmE [Helicobacter pylori P12]
 gi|210133586|gb|ACJ08577.1| thiophene/furan oxidation protein [Helicobacter pylori P12]
          Length = 461

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 146/457 (31%), Positives = 232/457 (50%), Gaps = 31/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AISII++SG +   + + + +K+   PR A +   F  +G +LDK L
Sbjct: 14  DTIAAIATPLGKGAISIIKISGNNALNILKQLTQKQDFTPRYAYVHDIFS-NGVLLDKAL 72

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 73  VIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 131

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 132 SEIEASVQLILCEDESALNALARQLKGELKIFIEEARSDLLKLLASSEVLIDYSEEDIPS 191

Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241
           +F  +  LN    I   K+ +    +Q +     RN G+ + I+G  NAGKSSL NA+  
Sbjct: 192 DFLKEVSLNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+
Sbjct: 247 EERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDI 306

Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEY--DHLISSFTGEGL 351
           IL + +++   E      ID         I +  K+DL      E    HL   +    L
Sbjct: 307 ILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLVPKLELEILKSHLKIPYA--LL 364

Query: 352 EELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLD 403
           E      K+ L +  +K+    P     +K  L  L+QT        E+ +       L+
Sbjct: 365 ETNTLNSKACLKDLGQKISTFFPKLDTQNKLLLTSLAQTTALENAITELQNAKNHLETLE 424

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + + ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 425 LFSYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 461


>gi|15639539|ref|NP_218989.1| tRNA modification GTPase TrmE [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025778|ref|YP_001933550.1| tRNA modification GTPase TrmE [Treponema pallidum subsp. pallidum
           SS14]
 gi|6647879|sp|O83561|MNME_TREPA RecName: Full=tRNA modification GTPase mnmE
 gi|226704786|sp|B2S3E2|MNME_TREPS RecName: Full=tRNA modification GTPase mnmE
 gi|3322842|gb|AAC65535.1| thiophene and furan oxidation protein (thdF) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018353|gb|ACD70971.1| thiophene and furan oxidation protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059927|gb|ADD72662.1| tRNA modification GTPase TrmE [Treponema pallidum subsp. pallidum
           str. Chicago]
 gi|313505085|gb|ADR64252.1| TrmE [Treponema pallidum subsp. pallidum str. Mexico A]
 gi|313505093|gb|ADR64259.1| TrmE [Treponema pallidum subsp. pallidum]
          Length = 495

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 136/494 (27%), Positives = 230/494 (46%), Gaps = 71/494 (14%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRI-LDKG 64
           I A++T   P+A+ I+R SG S  +       + +   R  +  +  G  LDG+  +D+ 
Sbjct: 12  IVAIATALSPAALGIVRTSGSSSIERVASFFSRAQALTRARAHTFLHGWILDGKTRVDEV 71

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +L+V+ +P SFTGE + E   HGG+  V  +   L      R A  GEFS R+F +GK D
Sbjct: 72  VLLVYRAPHSFTGEHAVEIICHGGVRTVQAVYR-LCLAQGFRAAQRGEFSFRSFFHGKRD 130

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED- 183
           L   E++  L+ + T   ++ ++  +SG L          L    + ++ ++++ E+E+ 
Sbjct: 131 LTRIEAIQSLVDARTCAAQQQAVLHLSGALQQEIAALTRALLAFSATLQGEIEYPEDEET 190

Query: 184 -VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            V +   +E+   +  L+   +    +     + R G +IV+ G  NAGKSSLFNAL  +
Sbjct: 191 RVHDIDMRELEPLVERLRRLRACWQERA----LQRTGVRIVLGGCPNAGKSSLFNALLGQ 246

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIV+ +PGTTRD L  DLDL G  V++ DTAG+R TD+ +E +G+ R+   ++ AD +
Sbjct: 247 DRAIVSSVPGTTRDWLEADLDLSGIPVRLCDTAGLRVTDNPIEAQGVVRSEQLLQGADCV 306

Query: 303 LLLKEINSKKEISFPK-------NIDFIFIGTKSDLYS--------------------TY 335
             +  IN +  +            +  + + T +DL S                    + 
Sbjct: 307 FYI--INGRAGVQAADCAFLSDCAVPLVVVVTHNDLMSMSERIQVCQAVQPFISAPVLSC 364

Query: 336 TEEYDH-------------------------LISSFTGEGLEELINKIKSILSNKFKKLP 370
               D                           +S+ T  GL+ L  +   +L     ++P
Sbjct: 365 ARSQDARGAGEQCLAGGKNGEVRDRAPRAFVCVSAKTHAGLDALRAQTLHLLHG--GQVP 422

Query: 371 F---SIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
           +   S+ S ++++  +   V+ LE A     +  GLD +  +L  A    G +TG V  E
Sbjct: 423 YEELSLGSERQYVL-VDAAVQALEHAQEAYARGFGLDAVVHDLEEALYHCGALTGEVHSE 481

Query: 427 QLLDIIFSKFCIGK 440
            +LD +F K C+GK
Sbjct: 482 DILDALFEKLCVGK 495


>gi|157781607|gb|ABV72158.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           casseliflavus]
          Length = 270

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 97/271 (35%), Positives = 156/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     + + I +   K   +  S    +G      + R++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGEEAIAIADRIFQAGTKTLAQVPSHTIHYGHIVDPEENRLMDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +L V   P +FT ED  E + HGGI VVN +L+ L      RLA PGEF++RAF NG++D
Sbjct: 61  MLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +K  I + ++  + G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|1199801|emb|CAA64971.1| thdF [Borrelia burgdorferi]
 gi|2689169|emb|CAA06004.1| thdF [Borrelia burgdorferi]
          Length = 463

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 144/466 (30%), Positives = 238/466 (51%), Gaps = 42/466 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRILD 62
           + I A++T  L SA+ +IR SG S       I K  K F   ++L    G     G ILD
Sbjct: 9   DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALNSASGNTIHYGYILD 62

Query: 63  KG-------LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
                    +++   +P+SFTG+D+ E   HG +  +  I++   K    R+A PGEF+ 
Sbjct: 63  SENGCKVDEVVVCLYAPKSFTGQDAIEVMAHGSVIGIKKIIDLFLK-SGFRMAEPGEFTL 121

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF   KIDL +AE++ ++I ++T     L++  +SG L          + +  S +   
Sbjct: 122 RAFLAKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGALFVKIDAIKKSILNFLSAVSVY 181

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LD+    +V +       + IL  K ++   I+  K+ E I NG  +V+ G  NAGKSSL
Sbjct: 182 LDY----EVDDHEISIPFDLILSSKAELKKLINSYKVYEKIDNGVALVLAGSVNAGKSSL 237

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
           FN   KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++   
Sbjct: 238 FNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNSL 297

Query: 296 VENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH------ 341
           ++ A L++ + +++S   K +  F      N   +F+  K DL  +  TEE+        
Sbjct: 298 IKEASLVIYVIDVSSNLTKDDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSKVLNS 357

Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMAS 394
               +IS+   EG++ L +KI++++S +  ++     I S  R +  L +     L++ S
Sbjct: 358 SNLIMISTKNLEGIDILYDKIRALISYERVEIGLDDIIISSNRQMQLLEKAYALILDLLS 417

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++    D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 418 KIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 463


>gi|257457804|ref|ZP_05622965.1| tRNA modification GTPase TrmE [Treponema vincentii ATCC 35580]
 gi|257444854|gb|EEV19936.1| tRNA modification GTPase TrmE [Treponema vincentii ATCC 35580]
          Length = 459

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 142/452 (31%), Positives = 232/452 (51%), Gaps = 48/452 (10%)

Query: 22  IIRLSGPSCFQ-VCEFICKKKKPFPRKA-SLRYFFGLD-GRILDKGLLIVFPSPESFTGE 78
           I+R SG    + +  F  + +     K  SL Y +  D G  +D+ +L V+ +P+S TGE
Sbjct: 23  IVRTSGKRSLEFISRFFSRPQALLQAKGHSLVYGWIHDEGVKIDEVVLCVYRAPKSNTGE 82

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           ++ E   HGG  VV  +   L      R A  GEF+ R+F +GK DL  AE++ ++I S+
Sbjct: 83  NAVEIICHGGPGVVKTVYR-LCIKNGFRAAERGEFTFRSFIHGKADLTRAEAVREIIDSK 141

Query: 139 TEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           T   ++ +   +SG    E+ S+    I  L    + +E  +++ E+E+    S  E L 
Sbjct: 142 THTAQKKAAGRLSGNVFREIESVKSDLITAL----AALEVGIEYPEDEETIADSFDETL- 196

Query: 195 DILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
               LK  +S+        +  +I + G ++V+ G +NAGKSSLFNAL K+D AIV+DI 
Sbjct: 197 ----LKKPLSALQLLADSWQTEKIYQAGVRLVLAGKTNAGKSSLFNALLKEDRAIVSDIH 252

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL---KEI 308
           GTTRD L  +LD +G    I DTAG+R T+D +E  G++R+      AD++L L    + 
Sbjct: 253 GTTRDWLEAELDFKGIPAHIFDTAGLRATEDAIEAIGVRRSVELASAADIVLYLIDGTKP 312

Query: 309 NSKKEISFPK--NIDFIFIGTKSD--------LYSTYTEEYDHL-ISSFTGEGLEELINK 357
            ++++I+F +   +  I + TK+D        +     + Y  + +SS TG G++ LI+ 
Sbjct: 313 PAEEDIAFIRENTVPLIIVQTKADKTGKVEPEVLPAALQRYPAVSLSSKTGAGIDRLIDT 372

Query: 358 IKSILSNKFKKLP-------FSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAEN 408
           +  +++     LP             K  +    + VRY    +L     G  LD + ++
Sbjct: 373 VVDLVTAD-TALPMPDGNVSLGTERQKEAVTAALEAVRY----ALEAGRSGYPLDAVIQD 427

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  A  +LG +TG V  + +LD IFS FC+GK
Sbjct: 428 IEDAVHALGSVTGEVRSDDILDKIFSGFCVGK 459


>gi|157781615|gb|ABV72162.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           columbae]
          Length = 270

 Score =  169 bits (427), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 99/271 (36%), Positives = 163/271 (60%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLD---GRILDKG 64
           +ST     AISI+RLSG     + +  F+  KK+    ++ +L Y    D    ++LD+ 
Sbjct: 1   ISTAPGEGAISIVRLSGSEALAIADQVFVAGKKQLSAVESHTLHYGHIHDKERNQVLDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGG+ V N IL+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVAVMRAPKTFTREDVVEINCHGGMVVTNKILQLLLR-KGARLAEPGEFTKRAFLNGRMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+   +L+M  + G LS L  +   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIHAKTDKAMQLAMNQLDGRLSQLIRKLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +S+ +  +   ++ +I   +S    G+I+R+G K  I+G  N GKSSL N L  ++ 
Sbjct: 180 EEMTSQLMFANAKQVEAEIIRLLSTANQGKILRDGLKTAIIGRPNVGKSSLLNYLLDEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVNGVPLKLVDTA 270


>gi|262200042|ref|YP_003271251.1| tRNA modification GTPase TrmE [Haliangium ochraceum DSM 14365]
 gi|262083389|gb|ACY19358.1| tRNA modification GTPase TrmE [Haliangium ochraceum DSM 14365]
          Length = 474

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 135/479 (28%), Positives = 228/479 (47%), Gaps = 45/479 (9%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGL--- 56
           ++ +++TI A++T      + ++R+SGP    V    + +     P +A     +GL   
Sbjct: 2   LSAQRDTIAAIATPTGTGGVGVVRISGPQAGAVLGRVLARAPDDLPDRA---LVYGLARD 58

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            DG  LD  L ++  +P SFTGED AE H HGG   ++ +L  + +    R A PGEF+R
Sbjct: 59  RDGGRLDDVLAVLMRAPRSFTGEDVAEIHGHGGPVNMSRLLRAVLEQ-GARPAEPGEFTR 117

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAFENGK+DL+ AE++ D+I + +E   RL+   ++G+          + T + + +EA 
Sbjct: 118 RAFENGKLDLVRAEAILDVIEAGSERAWRLAQAQLAGDFGQQVTALRARATSLLAEVEAC 177

Query: 176 LDFSEE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +DF EE ED    ++ EV      L  ++S       LG  +R+G ++ ++G  NAGKSS
Sbjct: 178 IDFPEEGEDY--LATSEVAARCRTLGRELSGFAGTFALGRALRSGIEVALVGPVNAGKSS 235

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-----ETDDIVEKEGI 289
           +FNAL   + AIV   PGTTRD +      +G  V + DTAG R     +  + +E  GI
Sbjct: 236 IFNALIGSERAIVDAAPGTTRDYVEARAVWDGVPVTVIDTAGERDVAGSQAGERIEARGI 295

Query: 290 KRTFLEVENADLILLLK--------------------------EINSKKEISFPKNIDFI 323
           +        ADL + L+                          + ++    +   +   +
Sbjct: 296 EMGRARAAQADLRVHLRSATGAGGAQGEGGGDGADRAHGAAGTQDDAGAWSAASADEREL 355

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYH 382
            + +K DL +    +     S+ TG GL+ L   I + +     +     + + +R    
Sbjct: 356 QVWSKCDLGAPADGDPRPRTSARTGAGLDALKQLILERVCGASLEADEGHVVTSERQRDL 415

Query: 383 LSQTVRYLEMASLNEKDCG-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L+      E A+        ++++A  +R A+  L ++ G    E++LD +F +FCIGK
Sbjct: 416 LAHAAAAFERAAQARDARAPIEVLALEIREATEQLARLMGERVGEEVLDDLFGRFCIGK 474


>gi|308800228|ref|XP_003074895.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri]
 gi|116061445|emb|CAL52163.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri]
          Length = 508

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 146/475 (30%), Positives = 228/475 (48%), Gaps = 45/475 (9%)

Query: 4   EKETIFAVST---GALPSAISIIRLSGPSCFQVCE---FICKKKKPFPRKASLRYFFG-- 55
           + +TI  V+T   GA+   ++I+RLSGP+   +      + +  K      S R  +G  
Sbjct: 41  DADTIVGVATATAGAV-GGVAIVRLSGPNALTIASDVFAVGRGGKGVETWESHRATYGRV 99

Query: 56  --LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
              DGR +D+ + I F +P S+T ED  E H HGG   V   L    ++   R A  GEF
Sbjct: 100 TEADGRAIDEAIAIAFIAPRSYTAEDVVELHCHGGAVCVQRTLMRCREL-GARTARRGEF 158

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           + RAF NG++DL +AE++  L+S+ T      ++  M G L++   +       + + +E
Sbjct: 159 TLRAFLNGRLDLAQAEAVHALVSARTTAGADSALAAMRGGLTTPVSEARRTCVDLLAELE 218

Query: 174 ADLDFSEEE---DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           A LDF +E    DV+    K         +  I   +   K G ++  G  + ILG  N 
Sbjct: 219 ARLDFDDEMVPLDVEAIERKAS-----EAREKIREVLQTAKRGALLETGVTVAILGRPNV 273

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGI 289
           GKS L NAL + + +IVT   GTTRDV+   +++ G  V + DTAGIR ETDD VE+ G+
Sbjct: 274 GKSRLLNALTRSERSIVTSREGTTRDVVEASMNVAGIPVVLLDTAGIRSETDDEVEQIGV 333

Query: 290 KRTFLEVENADLILLLKEINS----------KKEISFPKNID--FIFIGTKSDLYST--Y 335
           +R+      AD++ L+ + +           K EI+  +      I +  K+D+      
Sbjct: 334 ERSRAAAAGADVVALVVDASRGWVSEDYDIWKSEIAANERARGAAILVINKTDVADAENA 393

Query: 336 TEEYDHL--------ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           T   D +        IS+ TG+ L EL   + + I  +       S   ++R    L   
Sbjct: 394 TPPADVVDSFSDVVRISAATGDNLVELERALARCITGDVVNTESESWAVNQRQAEALHVA 453

Query: 387 VRYLE-MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  L+ +    + D  LD    +LR A+ +LG +TG    E +LD IF +FCIGK
Sbjct: 454 LDSLDRLRDTIDADMPLDFWTIDLREAAFALGTVTGEDVTEDVLDTIFERFCIGK 508


>gi|188528222|ref|YP_001910909.1| tRNA modification GTPase TrmE [Helicobacter pylori Shi470]
 gi|254811486|sp|B2UVJ7|MNME_HELPS RecName: Full=tRNA modification GTPase mnmE
 gi|188144462|gb|ACD48879.1| tRNA modification GTPase TrmE [Helicobacter pylori Shi470]
          Length = 450

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 145/456 (31%), Positives = 231/456 (50%), Gaps = 29/456 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AIS+I++SG S   + + + +K+   PR A +   F  +G +LDK L
Sbjct: 3   DTIAAIATPLGKGAISVIKISGNSALNILKQLTQKQDFTPRYAYVCDIFS-NGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +F  +  LN    I   K+ +    +Q +  +    G+ + I+G  NAGKSSL NA+  +
Sbjct: 181 DFLDEVSLNLEKQIASFKDLLDFSNTQKQKNK----GHALSIVGKPNAGKSSLLNAMLLE 236

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+I
Sbjct: 237 ERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDII 296

Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEY--DHLISSFTGEGLE 352
           L + +++   E      ID         I +  K+DL      E    HL   ++   LE
Sbjct: 297 LGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSHLKIPYS--LLE 354

Query: 353 ELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDI 404
                 K+ L +  +K+    P     +K  L  L+Q         E+ +       L++
Sbjct: 355 TNTLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIFELQNAKNHLETLEL 414

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +L  A  SL  +T   +  Q+LD +FS+FC+GK
Sbjct: 415 FSYHLLSAIESLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|317013217|gb|ADU83825.1| tRNA modification GTPase TrmE [Helicobacter pylori Lithuania75]
          Length = 450

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 234/457 (51%), Gaps = 31/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AISII++SG +   V + + +K+   PR A +R  F  +G +LDK L
Sbjct: 3   DTIAAIATPLGKGAISIIKISGHNALNVLKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDMCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARSDLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NF---SSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241
           +F    S+ +   I   K+ +    +Q +     RN G+ + I+G  NAGKSSL NA+  
Sbjct: 181 DFLDGVSQNLEKQIASFKDLLDFSNTQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 235

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+
Sbjct: 236 EERALVSDIKGTTRDTIEEIIELQGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDI 295

Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEY--DHLISSFTGEGL 351
           IL + +++   E      ID         I +  K+DL      E    HL   ++   L
Sbjct: 296 ILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSHLKIPYS--LL 353

Query: 352 EELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLD 403
           E      K+ L +  +K+    P     +K  L  L+Q +       E+ +       L+
Sbjct: 354 ETNTLNSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQKIALENAITELQNAKNHLETLE 413

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + + ++  A  +L  +T   +  Q+LD +F++FC+GK
Sbjct: 414 LFSYHILSAIENLNLLTRPYETSQMLDSMFAEFCLGK 450


>gi|300871775|ref|YP_003786648.1| tRNA-modification GTPase TrmE [Brachyspira pilosicoli 95/1000]
 gi|300689476|gb|ADK32147.1| tRNA-modification GTPase, TrmE [Brachyspira pilosicoli 95/1000]
          Length = 462

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 143/463 (30%), Positives = 244/463 (52%), Gaps = 36/463 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGL----D 57
           +TI A++T    SA+++IR+SG     +   IC     + K   +    + ++ L    +
Sbjct: 8   DTIVALATPYSKSALALIRMSGKDSLNIASKICYYANNENKNITKFEHRKSYYALIKDEN 67

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +++   SP +FT ED+ EF  HG I V+  ++  + +    R AN GEF+ RA
Sbjct: 68  NTPIDELVVLTTLSPNTFTSEDTVEFMCHGSIVVIESLINLIIR-NGARQANRGEFTYRA 126

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           + NG+I + EAE++ DLI S   +    S+  + G L+    +  + + +    I  +LD
Sbjct: 127 YINGRIGISEAEAIHDLIDSNNRLMAEASIYKIRGRLTREIDKLRENVKNTLMLIYGELD 186

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E+ D + FS  +++ +   +K DI + ++  K  E + NG K+ I+G  NAGKSS+FN
Sbjct: 187 FPED-DTETFSYDKLIENFYTIKKDIENILNNSKRVENLINGIKVSIVGRVNAGKSSIFN 245

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEV 296
            +  K+ AIV++I GTTRD L+ ++ ++       DTAG  +E D+ +E EGI+R     
Sbjct: 246 MILDKERAIVSNIAGTTRDFLSENIYIDNIPFYFMDTAGFHKEADNDIELEGIERAKKCA 305

Query: 297 ENADLILLL------KEINSKKEISF---PKNIDFIFIGTKSDLYSTYTEEYDHL--ISS 345
             AD+I+ +         +    I F    KN + I++  K DL   + E+ D+   IS+
Sbjct: 306 NEADIIIAVFDYNDNANDDDINLIEFLQQLKNKNIIYVLNKIDLEKKFNEKIDNAIEIST 365

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN---EKDC 400
            T +G E+LI  +K    N  K    +I + + ++ +  +   YLE A   LN   EK  
Sbjct: 366 KTKQGKEKLIEALK----NHIKDSDITIFNKESYVNNRERG--YLERAIEQLNICIEKSN 419

Query: 401 G---LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               LD +AE + + +  LG ++G ++ E++++ IF  FCIGK
Sbjct: 420 NNHLLDEVAEEINILNNILGNVSGKIEAEEIINEIFENFCIGK 462


>gi|224534206|ref|ZP_03674784.1| tRNA modification GTPase TrmE [Borrelia spielmanii A14S]
 gi|224514308|gb|EEF84624.1| tRNA modification GTPase TrmE [Borrelia spielmanii A14S]
          Length = 464

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 149/476 (31%), Positives = 251/476 (52%), Gaps = 61/476 (12%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGLD 57
           + I A++T  L SA+ +IR SG S       I K  K F  +A+L         Y + LD
Sbjct: 9   DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNQAALNSAAGNTIHYGYILD 62

Query: 58  GR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                 +D+ ++ ++ +P+SFTG+DS E   HG +  +  I++   K    R+A PGEF+
Sbjct: 63  NENNCKVDEVVVCLYRAPKSFTGQDSIEVIAHGSVIGIKKIIDLFLK-SGFRMAEPGEFT 121

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT-HIRSFIE 173
            R+F   KIDL +AE++ ++I ++T     L++  +SG L       ID +  HI +F+ 
Sbjct: 122 FRSFLAKKIDLTKAEAINEIIFAKTNKTYSLAVNKLSGAL----FVKIDTIKKHILNFLS 177

Query: 174 A---DLDFSEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           A    LD+  ++       +E+    + IL  K ++   I+  K+ E I +G  +V+ G 
Sbjct: 178 AVSVYLDYEVDD-------REIGIPFDLILSSKAELKKLINSYKVYEKIDHGITLVLAGS 230

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSLFN   KKD +IV+  PGTTRD +    +L+G L  I DTAG+R+ D+ VE+ 
Sbjct: 231 VNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGVLFNIFDTAGLRDADNFVERL 290

Query: 288 GIKRTFLEVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEY 339
           GI+++   ++ A L++ + +++S   + ++ F      N   +F+  K DL  +  TEE+
Sbjct: 291 GIEKSNSLIKEASLVIYVIDVSSDLTRDDLLFIDSNKSNAKILFVLNKIDLKINKSTEEF 350

Query: 340 DH----------LISSFTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQ 385
                       +IS    EG++ L +KIK+++S  ++K+       I S +R +  L +
Sbjct: 351 VRSNVLNSSNLIMISIKDLEGIDILYDKIKTLIS--YEKVEIGLDDIIISSRRQIQLLEK 408

Query: 386 TVRY-LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                L++ S  ++    D++A +       LG+ITG V  E +L+ +F  FC+GK
Sbjct: 409 AYALILDLLSKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLNNMFKNFCLGK 464


>gi|308183548|ref|YP_003927675.1| tRNA modification GTPase TrmE [Helicobacter pylori PeCan4]
 gi|308065733|gb|ADO07625.1| tRNA modification GTPase TrmE [Helicobacter pylori PeCan4]
          Length = 450

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 169/301 (56%), Gaps = 9/301 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AIS+I++SG +   + + + +K+   PR A +R  F  DG +LDK L
Sbjct: 3   DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-DGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARSDLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLNDILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +F  +   N    L+  I+S    +    + +    G+ + I+G  NAGKSSL NA+  +
Sbjct: 181 DFLKEVSFN----LEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLE 236

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+I
Sbjct: 237 ERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADRIERLGIEKSLKSLENCDII 296

Query: 303 L 303
           L
Sbjct: 297 L 297


>gi|157781585|gb|ABV72147.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           hirae]
 gi|157781587|gb|ABV72148.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           hirae]
          Length = 270

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/271 (36%), Positives = 161/271 (59%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLDGR---ILDKG 64
           +ST     AISI+RLSG     + +  + C KK      + ++ Y    D +   I+D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVALADKVYRCGKKSLLEVPSHTIHYGHITDPKNEQIIDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMLAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LSSL      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMGLALNQLDGNLSSLIRSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     ++  I + ++  K G+++R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTRLLLEKATMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|219684548|ref|ZP_03539491.1| tRNA modification GTPase TrmE [Borrelia garinii PBr]
 gi|219671910|gb|EED28964.1| tRNA modification GTPase TrmE [Borrelia garinii PBr]
          Length = 464

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 144/473 (30%), Positives = 250/473 (52%), Gaps = 55/473 (11%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGLD 57
           + I A++T  L SA+ +IR SG S       I K  K F   ++L         Y + LD
Sbjct: 9   DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALNSAPGNTIHYGYILD 62

Query: 58  GR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                 +D+ ++ ++ +P+SFTG+DS E   HG +  +  I++   K    R+A PGEF+
Sbjct: 63  NENNCKVDEVVVCLYRAPKSFTGQDSIEVIAHGSVIGIKKIIDLFLK-SGFRMAEPGEFT 121

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL----SSLYGQWIDKLTHIRS 170
            R+F   KIDL +AE++ ++I ++T     L++  +SG L     ++ G  ++ L+ +  
Sbjct: 122 LRSFFAKKIDLTKAEAINEIIFAKTNKTYSLAVNKLSGALFVKIDAIKGCILNFLSAVSV 181

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           +++ ++D  E     +     +LN    LK  I+S+    K+ E I +G  +V+ G  NA
Sbjct: 182 YLDYEVDDHE----ISIPFDLILNSKAELKKLINSY----KVYEKIDHGVTLVLAGSVNA 233

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSLFN   KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+
Sbjct: 234 GKSSLFNMFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIE 293

Query: 291 RTFLEVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH- 341
           ++   ++ A L++ + +++S   +++  F      N   +F+  K DL  +  TEE+   
Sbjct: 294 KSNSLIKEASLVIYVIDVSSNLTREDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRS 353

Query: 342 ---------LISSFTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVR 388
                    +IS+   EG++ L +KIK+++S  ++K+       I S  R +  L +   
Sbjct: 354 SVLNSSNLIMISTKNLEGIDILYDKIKTLIS--YEKVEIGLDDIIISSSRQMQLLEKAYA 411

Query: 389 -YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L++ +  ++    D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 412 LVLDLLNKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|51598440|ref|YP_072628.1| tRNA modification GTPase TrmE [Borrelia garinii PBi]
 gi|81610174|sp|Q662I5|MNME_BORGA RecName: Full=tRNA modification GTPase mnmE
 gi|51573011|gb|AAU07036.1| thiophene and furan oxidation protein [Borrelia garinii PBi]
          Length = 464

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 144/470 (30%), Positives = 244/470 (51%), Gaps = 43/470 (9%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFF 54
              + I A++T  L SA+ +IR SG S       I K  K F   ++L         Y +
Sbjct: 6   QRDDDIVALATPFLSSALCVIRSSGASS------IPKFSKIFSNHSALNSAPGNTIHYGY 59

Query: 55  GLDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
            LD      +D+ ++ ++ +P+SFTG+DS E   HG +  +  I++   K    R+A PG
Sbjct: 60  ILDNENNCKVDEVVVCLYRAPKSFTGQDSIEVIAHGSVIGIKKIIDLFLK-SGFRMAEPG 118

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+ R+F   KI L +AE+L ++I + T     L++  +SG L +        L +I S 
Sbjct: 119 EFTLRSFLAKKIALTKAEALHEIIFATTNKTYSLAVTPLSGALFANLDAIQRCLLNILSA 178

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           + A LD+  ++   +     +LN    LK  I+S+    K+ E I +G  +V+ G  NAG
Sbjct: 179 VSAYLDYEVDDHEISIPFDLILNSKAELKKLINSY----KVYEKIDHGVTLVLAGSVNAG 234

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSLFN   KKD +IV+  PGTTRD +    +L+G L  + DTAG+++ D+ VE+ GI++
Sbjct: 235 KSSLFNMFLKKDRSIVSSYPGTTRDYIEATFELDGILFNLFDTAGLKDADNFVERLGIEK 294

Query: 292 TFLEVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH-- 341
           +   ++ A L++ + +++S   +++  F      N   +F+  K DL  +  TEE+    
Sbjct: 295 SNSLIKEASLVIYVIDVSSNLPREDFLFIDSNKSNSKILFVLNKIDLNINKSTEEFVRSS 354

Query: 342 --------LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVR-YL 390
                   +IS+   EG++ L +KIK+++S +  ++     I S  R +  L +     L
Sbjct: 355 VLNSSNLIMISTKNLEGIDILYDKIKTLISYERVEIGLDDIIISSSRQMQLLEKAYALVL 414

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ +  ++    D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 415 DLLNKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|157781603|gb|ABV72156.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           casseliflavus]
 gi|157781605|gb|ABV72157.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           casseliflavus]
          Length = 270

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/270 (35%), Positives = 155/270 (57%), Gaps = 7/270 (2%)

Query: 12  STGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGL-----DGRILDKGL 65
           ST     AISI+RLSG     + + I +   K   +  S    +G      + R++D+ +
Sbjct: 2   STPPGEGAISIVRLSGEEAIAIADQIFQAGTKTLAQVPSHTIHYGHIVDPEENRLMDEVM 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L V   P +FT ED  E + HGGI VVN +L+ L      RLA PGEF++RAF NG++DL
Sbjct: 62  LSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFTKRAFLNGRVDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ DLI ++T+    L++  + G LS L      ++    + +E ++D+ E +DV+
Sbjct: 121 SQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEVNIDYPEYDDVE 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +++ +L     +K  I + ++  + G+I+R G    I+G  N GKSSL N L +++ A
Sbjct: 181 ELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSSLLNHLLREEKA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 241 IVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781617|gb|ABV72163.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           phoeniculicola]
          Length = 270

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/271 (36%), Positives = 158/271 (58%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG--LDGR---ILDKG 64
           +ST     AISI+RLSG    Q+ + + +   K      S    +G  +D +   I+D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVQIADKVYQSGSKSLIEVPSHTIHYGHIIDPKSEQIIDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +L+ L      RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMKAPKTFTREDVVEINCHGGIVVVNQLLQ-LVLREGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDRAMNLALNQLDGNLSHLIRTLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++K +L    F++  I   +   K G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTKLLLEKANFVQKQIDQLLVTAKQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781591|gb|ABV72150.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           faecium]
          Length = 270

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/272 (35%), Positives = 162/272 (59%), Gaps = 9/272 (3%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLD---GRILDK 63
           +ST     AISI+RLSG    Q+ + +     K+    P   ++ Y   +D    +++D+
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSH-TIHYGHIVDPKSNQLVDE 59

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG++
Sbjct: 60  VMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRV 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++D+ E +D
Sbjct: 119 DLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNIDYPEYDD 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL N L +++
Sbjct: 179 VEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHLLREE 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 239 KAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|225552070|ref|ZP_03773010.1| tRNA modification GTPase TrmE [Borrelia sp. SV1]
 gi|225371068|gb|EEH00498.1| tRNA modification GTPase TrmE [Borrelia sp. SV1]
          Length = 464

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 142/467 (30%), Positives = 240/467 (51%), Gaps = 43/467 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGLD 57
           + I A++T  L SA+ +IR SG S       I K  K F   ++L         Y + LD
Sbjct: 9   DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALNSASGNTIHYGYILD 62

Query: 58  GR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                 +D+ ++ ++ +P+SFTG+D+ E   HG +  +  I++   K    R+A PGEF+
Sbjct: 63  NENDCKVDEVVVCLYRAPKSFTGQDAIEVMAHGSVIGIKKIIDLFLK-SGFRMAEPGEFT 121

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF   KIDL +AE++ ++I ++T     L++  +SG L          + +  S +  
Sbjct: 122 LRAFLAKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGALFVKIDAIKKSILNFLSAVSV 181

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LD+    +V +       + IL  K ++   I+  K+ E I +G  +V+ G  NAGKSS
Sbjct: 182 YLDY----EVDDHEISIPFDLILSSKAELKKLINSYKVYEKIDHGVALVLAGSVNAGKSS 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           LFN   KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++  
Sbjct: 238 LFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNS 297

Query: 295 EVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH----- 341
            ++ A L++ + +++S   K +  F      N   +F+  K DL  +  TEE+       
Sbjct: 298 LIKEASLVIYVIDVSSNLTKDDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSKVLN 357

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMA 393
                +IS+   EG++ L +KI++++S +  ++     I S  R +  L +     L + 
Sbjct: 358 SSNLIMISTKNLEGIDILYDKIRALISYERVEIGLDDIIISSSRQMQLLEKAYALILNLL 417

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S  ++    D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 418 SKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|15612410|ref|NP_224063.1| tRNA modification GTPase TrmE [Helicobacter pylori J99]
 gi|14195308|sp|Q9ZJG6|MNME_HELPJ RecName: Full=tRNA modification GTPase mnmE
 gi|4155957|gb|AAD06922.1| putative thiophene/furan oxidation protein [Helicobacter pylori
           J99]
          Length = 461

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 142/455 (31%), Positives = 232/455 (50%), Gaps = 27/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AISII++SG +   + + + +K+   PR A +   F  DG +LDK L
Sbjct: 14  DTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVCDIFS-DGVLLDKAL 72

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 73  VIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 131

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +  + L  + +  E  +D+SEE+   
Sbjct: 132 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIPS 191

Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241
           +F  +   N    I   K+ +    +Q +     RN G+ + I+G  NAGKSSL NA+  
Sbjct: 192 DFLKEVSFNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+
Sbjct: 247 EERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDI 306

Query: 302 ILLLKEINS---KKEISFPKNID-----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           IL + +++    K++ +    ++      I +  K+DL      E            LE 
Sbjct: 307 ILGVFDLSKPLEKEDFNLMDTLNRTKKPCIVVLNKNDLAPKLELEILKSYLKIPYSILET 366

Query: 354 LINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDII 405
                K+ L +  +K+    P     +K  L  L+QT        E+ +       L++ 
Sbjct: 367 NTLNSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQTTALENAITELQNAKSHLDTLELF 426

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 427 SYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 461


>gi|317010176|gb|ADU80756.1| tRNA modification GTPase TrmE [Helicobacter pylori India7]
          Length = 450

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 232/457 (50%), Gaps = 31/457 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AISII++SG +   + + + +K+   PR A +   F  +G +LDK L
Sbjct: 3   DTIAAIATPLGKGAISIIKISGNNALNILKQLTQKQDFTPRYAYVCDIFS-NGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241
           +F  +  LN    I   K+ +    +Q +     RN G+ + I+G  N GKSSL NA+  
Sbjct: 181 DFLDEVSLNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNTGKSSLLNAMLL 235

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+
Sbjct: 236 EERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADTIERLGIEKSLKSLENCDI 295

Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEY--DHLISSFTGEGL 351
           IL + +++   E      ID         I +  K+DL      E    HL   ++   L
Sbjct: 296 ILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEVLKSHLKIPYS--IL 353

Query: 352 EELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLD 403
           E      K+ L +  +K+    P     +K  L  L+Q        +E+ +       L+
Sbjct: 354 ETNTLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIIELQNAQNHLETLE 413

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + + +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 414 LFSYHLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|317060108|ref|ZP_07924593.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D12]
 gi|313685784|gb|EFS22619.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D12]
          Length = 390

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/391 (32%), Positives = 219/391 (56%), Gaps = 22/391 (5%)

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127
           +  +P ++T ED  E + HGG  +   ILE L      RLA  GEF+RRAF +G+IDL +
Sbjct: 4   IMKAPNTYTREDIVEINCHGGYLITEKILE-LVLSSGARLAEVGEFTRRAFFHGRIDLTQ 62

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           AE++ D+I  +TE    +S+  + G+L          + ++ + I   LD+ EE  ++  
Sbjct: 63  AEAVMDIIHGKTEKSLSVSINQLRGDLKEKIISLKKAILNLAAHINVVLDYPEEG-IEEP 121

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             + +LN++  +  +I   IS  + G++I+ G K VI+G  N GKSSL N++ +++ AIV
Sbjct: 122 IPENLLNNLRKVSIEIQELISSYQKGKMIKEGVKTVIIGKPNVGKSSLLNSILREERAIV 181

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           T + GTTRDV+   ++++G  + + DTAGIR+T D VE  G+ ++   ++ ADL+L + +
Sbjct: 182 TQVAGTTRDVIEEVINIKGIPLILVDTAGIRDTTDFVENIGVMKSKEFLQKADLVLFVLD 241

Query: 308 IN---SKKE----ISFPKNIDFIFIGTKSDL-----YSTYTEEYDHL-ISSFTGEGLEEL 354
            +   SK++    IS  +N   I I  K+DL      S+ ++  + + +S+    G+EE+
Sbjct: 242 ASQELSKEDREIYISLQENQKVIGILNKTDLEKKIQVSSLSKIKNWIEVSAMKCIGIEEM 301

Query: 355 INKI-KSILSNKF----KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
             KI + IL  K     +KL  +   HK  L   +  ++   + S  E+   +D++A ++
Sbjct: 302 EEKIYQYILQEKVEENSQKLILTNIRHKAALEKTNGAIK--NIFSTVEQGLPMDLMAVDI 359

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + A  SL +ITG +  E +LD IF  FC+GK
Sbjct: 360 KEALDSLSEITGEISTEDVLDHIFHNFCVGK 390


>gi|157781583|gb|ABV72146.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           durans]
          Length = 270

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/271 (35%), Positives = 162/271 (59%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLDGR---ILDKG 64
           +ST     AISI+RLSG     + +  + C KK      + ++ Y   +D +   ++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVALADKVYSCGKKSLLEVPSHTIHYGHIVDPKNEQLVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVILAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTKLLLEKATMIQERIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781567|gb|ABV72138.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           saccharolyticus]
          Length = 269

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/270 (35%), Positives = 157/270 (58%), Gaps = 6/270 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRILDKGL 65
           +ST     AISI+RLSG     + + + K  K     AS    +G        +++D+ +
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVTIADKVFKANKSLADVASHTINYGHLYDPQTEQLVDEVM 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           + V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG++DL
Sbjct: 61  VSVMRAPKTFTREDVIEINCHGGIVVVNQILQLLLRQ-GARLAEPGEFTKRAFLNGRVDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ DLI ++T+    L++  + G LS L      ++    + +E ++D+ E +DV+
Sbjct: 120 SQAEAVMDLIRAKTDKAMNLALNQLDGNLSHLIRALRQEILETLAQVEVNIDYPEYDDVE 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +++ ++     ++  I + +   + G+I+R G    I+G  N GKSSL N L +++ A
Sbjct: 180 EMTTRLLVEKATQVQAQIQALLQTAQQGKILREGLNTAIIGRPNVGKSSLLNHLLREEKA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 IVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 269


>gi|328859150|gb|EGG08260.1| hypothetical protein MELLADRAFT_34988 [Melampsora larici-populina
           98AG31]
          Length = 350

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 168/309 (54%), Gaps = 24/309 (7%)

Query: 6   ETIFAVSTGA-LPSAISIIRLSGPSC----FQVCEFICKKK---------KPFPRKASLR 51
           + IFA +T     SA+SIIR+ GP       Q+   I  KK         K  PR A LR
Sbjct: 39  QNIFAAATPTNSKSALSIIRVDGPQAAGLYHQMTSTISPKKHSNAPLHQSKLPPRTAKLR 98

Query: 52  YFFGLDGR-ILD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109
                  +  LD + ++I FP  +S +   + EFH+HG  A+   ++  L+++ N RLA 
Sbjct: 99  RIVDPSTKETLDPEAIVINFPH-QSTSTTSTFEFHLHGSPAITKSVILSLSRLSNFRLAQ 157

Query: 110 PGEFSRRAFENGKI------DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
           PGEF++R +E   I      DL +  +L +LI +ET+ QR+L++    G    +Y     
Sbjct: 158 PGEFTQRRYERSMIRDQPEFDLNQLLALKNLIDAETDEQRKLAIHQFDGPFKQVYQSMRK 217

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
            L    +  EA +DFSE+  + + S  K+V + +  L++ I SH++     E + NG ++
Sbjct: 218 TLLESMALCEAIIDFSEDGSIDDESVWKQVSHKVQSLRSIIRSHLNDSNRHEKVLNGIRL 277

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            + G  N GKS+L N L  ++ +IV+  PGTTRDV+ I LD  G+ + +SDTAG+R+T D
Sbjct: 278 TLFGAPNVGKSTLLNWLVNREASIVSPHPGTTRDVIEISLDFHGFPIIVSDTAGLRDTQD 337

Query: 283 IVEKEGIKR 291
            +E+ GI R
Sbjct: 338 PIEEIGIDR 346


>gi|298735582|ref|YP_003728105.1| tRNA modification GTPase [Helicobacter pylori B8]
 gi|298354769|emb|CBI65641.1| tRNA modification GTPase [Helicobacter pylori B8]
          Length = 461

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 147/470 (31%), Positives = 233/470 (49%), Gaps = 57/470 (12%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AISII++SG +   V + + +K+   PR A +   F  +G +LDK L
Sbjct: 14  DTIAAIATPLGKGAISIIKISGNNALNVLKQLTQKQDFTPRYAYVCDIFS-NGVLLDKAL 72

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 73  AIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 131

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 132 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 191

Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241
           +F ++  LN    I   K+ +    +Q +     RN G+ + I+G  NAGKSSL NA+  
Sbjct: 192 DFLNEVSLNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+
Sbjct: 247 EERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDI 306

Query: 302 ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
           IL + +++   E       DF       +L  T        I         +L+ K++  
Sbjct: 307 ILGVFDLSKPLEKE-----DF-------NLIDTLNRAKKPCIVVLNK---NDLVPKLELE 351

Query: 362 LSNKFKKLPFSI-----PSHKRHLYHLSQ----------TVRYLEMASLNEKDC------ 400
           +   + K+P+S+      + K  L  LSQ          T   L + SL +K        
Sbjct: 352 ILKSYLKIPYSLLETNTLNSKACLKDLSQKISTFFPKLDTQNKLLLTSLAQKTALENAIF 411

Query: 401 ----------GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                      L++ + +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 412 ELQNAKNHLETLELFSYHLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 461


>gi|157781581|gb|ABV72145.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           durans]
          Length = 270

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/271 (35%), Positives = 162/271 (59%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLDGR---ILDKG 64
           +ST     AISI+RLSG     + +  + C KK      + ++ Y   +D +   ++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVALADKVYSCGKKSLLEVPSHTIHYGHIVDPKNEQLVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMLAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTKLLLEKATMIQERIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|317182657|dbj|BAJ60441.1| tRNA modification GTPase TrmE [Helicobacter pylori F57]
          Length = 450

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 142/456 (31%), Positives = 227/456 (49%), Gaps = 29/456 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AIS+I++SG +   + + + +K+   PR A +   F  +G +LDK L
Sbjct: 3   DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVHDIFS-NGALLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 180

Query: 183 DVQNFSSKEVLNDILFLKN--DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           D  N  S+ +   I   K+  D S+   Q         G+ + I+G  NAGKSSL NA+ 
Sbjct: 181 DFLNEVSQNLEKQIASFKDLLDFSNMQKQK------NKGHALSIVGKPNAGKSSLLNAML 234

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D
Sbjct: 235 LEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCD 294

Query: 301 LILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           +IL + +++   E      ID         I +  K+DL      E            LE
Sbjct: 295 IILGVFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLE 354

Query: 353 ELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDI 404
                 K+ L +  +K+    P     +K  L  L+Q        +E+ +       L++
Sbjct: 355 TNTLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIIELQNAKNHLETLEL 414

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 415 FSYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|317179628|dbj|BAJ57416.1| tRNA modification GTPase TrmE [Helicobacter pylori F30]
          Length = 450

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 143/465 (30%), Positives = 233/465 (50%), Gaps = 47/465 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AIS+I++SG +   + + + +K+   PR A +   F  +G +LDK L
Sbjct: 3   DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVHDIFS-NGALLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 180

Query: 183 DVQNFSSKEVLNDILFLKN--DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           D  N  S+ +   I   K+  D S+   Q         G+ + I+G  NAGKSSL NA+ 
Sbjct: 181 DFLNEVSQNLEKQIASFKDLLDFSNMQKQK------NKGHALSIVGKPNAGKSSLLNAML 234

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +E+ D
Sbjct: 235 LEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESTDKIERLGIEKSLKSLESCD 294

Query: 301 LILLLKEINSKKEISFPKNID--------FIFIGTKSDL--------YSTYTEEYDHLIS 344
           ++L + +++   E      ID         I +  K+DL          +Y +    L+ 
Sbjct: 295 IVLGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELETLKSYLKIPHSLLE 354

Query: 345 SFT---GEGLEELINKIKSI---LSNKFKKLPFSIPSH---KRHLYHLSQTVRYLEMASL 395
           + T      L++L  KI +    L  + K L  S+      +  ++ L     +LE    
Sbjct: 355 TNTLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIFELQNAKNHLET--- 411

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 L++ + +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 412 ------LELFSYHLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450


>gi|157781609|gb|ABV72159.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           casseliflavus]
          Length = 270

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 96/271 (35%), Positives = 155/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST      ISI+RLSG     + + I +   K   +  S    +G      + R++D+ 
Sbjct: 1   ISTPPGEGPISIVRLSGEEAIAIADRIFQAGTKTLAQVPSHTIHYGHIVDPEENRLMDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +L V   P +FT ED  E + HGGI VVN +L+ L      RLA PGEF++RAF NG++D
Sbjct: 61  MLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +K  I + ++  + G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|321311014|ref|YP_004193343.1| tRNA modification GTPase [Mycoplasma haemofelis str. Langford 1]
 gi|319802858|emb|CBY93504.1| tRNA modification GTPase [Mycoplasma haemofelis str. Langford 1]
          Length = 431

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 138/449 (30%), Positives = 237/449 (52%), Gaps = 35/449 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR---KASLRYFFGLDGRILDK 63
           TI A++T     A+ +IR+SG   F++   I     P  R   +  + +    + +++D+
Sbjct: 3   TIVALATPPGIGALHVIRVSGSEAFEILNRI--SINPVLRTEDRIQVTFLKSRNNKLIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            +L  F +P S+TGED  E   HG   +   I+EE+ K   +  A  GEF++RAF N KI
Sbjct: 61  VVLSKFYAPHSYTGEDCIEISCHGNSLISKLIIEEILKNGAVH-AKRGEFTKRAFLNNKI 119

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +A S+ +L ++ +E +    +E + G  S L   +I++L+ IRS  E ++D+  + +
Sbjct: 120 DLNQAISIGNLFAANSEGEIYSFVEEIKGATSKLIHSFIEELSSIRSECEMNIDYPPDIE 179

Query: 184 VQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           V++  SK   ++   I  L + +   +   K  ++  +G+++V++G  NAGKSSL N L 
Sbjct: 180 VED--SKFIGDIQERISSLHSKLLFFLESSKKQKL--SGFRVVLVGRPNAGKSSLINHLI 235

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            KD  IV+   GTTRD + +D   + YL+ + DTAGI E DD +  E I+R+   + +AD
Sbjct: 236 GKDKIIVSPEAGTTRDTVEVDYQFDDYLLTLVDTAGIYEVDDFLTNESIRRSKDAIRDAD 295

Query: 301 LILLLKEINSKKEIS------FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           L++ L  +  KK +         K++  IF  TKSDL+  +T E + +  S     + E 
Sbjct: 296 LLVHLVSLEDKKNLKELVGEFGGKSVITIF--TKSDLF-PHTRESNCI--SVKNSEISEF 350

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLA 412
           +  +++ L   +  +       +  + HL+ +   LE  + +L+     LD+IAE+L  A
Sbjct: 351 LRLLRNHLKENYSSVGV---KSQEGINHLNNSCLELEKSLGALS-----LDLIAEHLNFA 402

Query: 413 SVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
              L +I G   D  + ++ +F  FCIGK
Sbjct: 403 HDHLCRIVGLQQDSFEKINYLFDNFCIGK 431


>gi|216263825|ref|ZP_03435819.1| tRNA modification GTPase TrmE [Borrelia afzelii ACA-1]
 gi|215979869|gb|EEC20691.1| tRNA modification GTPase TrmE [Borrelia afzelii ACA-1]
          Length = 464

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 139/461 (30%), Positives = 239/461 (51%), Gaps = 31/461 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGR---I 60
           + I A++T  L SA+ +IR SG S       I          A  ++ Y + LD      
Sbjct: 9   DDIVALATPFLSSALCVIRSSGASSISKFSKIFSNHSALNSAAGNTIHYGYILDNENNCK 68

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ ++ ++ +P+SFTG+D+ E   HG +  +  I++   K    R+A PGEF+ R+F  
Sbjct: 69  VDEVVVCLYRAPKSFTGQDAVEVIAHGSVIGIKKIIDLFLK-SGFRMAEPGEFTFRSFLA 127

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            KIDL +AE++ ++I ++T     L++  +SG L          + +  S +   LD+  
Sbjct: 128 KKIDLTKAEAINEIIFAKTNKAYSLAVNKLSGALFVKIDTIKKCILNFLSAVSVYLDYEV 187

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           ++   +     +LN  + LK  I S+    K+ E I +G  +V+ G  NAGKSSLFN   
Sbjct: 188 DDREIDIPFDLILNSKVELKKLIDSY----KVYEKIDHGITLVLAGSVNAGKSSLFNLFL 243

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++   ++ A 
Sbjct: 244 KKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNSLIKEAS 303

Query: 301 LILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH----------L 342
           L++ + +I+S   + ++ F      N   +F+  K DL  +  TEE+            +
Sbjct: 304 LVIYVIDISSNLTRDDLLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSSVLNSSNLIM 363

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMASLNEKD 399
           IS    EG++ L +KI++++S +  ++     I S  R +  L +     L++ S  ++ 
Sbjct: 364 ISIKNLEGIDILYDKIRTLISYERVEIGLDDIIISSSRQIQLLEKAYALILDLLSKIDRQ 423

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 424 VSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|217033108|ref|ZP_03438572.1| hypothetical protein HPB128_27g15 [Helicobacter pylori B128]
 gi|216945181|gb|EEC23872.1| hypothetical protein HPB128_27g15 [Helicobacter pylori B128]
          Length = 450

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 147/470 (31%), Positives = 233/470 (49%), Gaps = 57/470 (12%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AISII++SG +   V + + +K+   PR A +   F  +G +LDK L
Sbjct: 3   DTIAAIATPLGKGAISIIKISGNNALNVLKQLTQKQDFTPRYAYVCDIFS-NGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  AIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241
           +F ++  LN    I   K+ +    +Q +     RN G+ + I+G  NAGKSSL NA+  
Sbjct: 181 DFLNEVSLNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 235

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+
Sbjct: 236 EERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDI 295

Query: 302 ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
           IL + +++   E       DF       +L  T        I         +L+ K++  
Sbjct: 296 ILGVFDLSKPLEKE-----DF-------NLIDTLNRAKKPCIVVLNK---NDLVPKLELE 340

Query: 362 LSNKFKKLPFSI-----PSHKRHLYHLSQ----------TVRYLEMASLNEKDC------ 400
           +   + K+P+S+      + K  L  LSQ          T   L + SL +K        
Sbjct: 341 ILKSYLKIPYSLLETNTLNSKACLKDLSQKISTFFPKLDTQNKLLLTSLAQKTALENAIF 400

Query: 401 ----------GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                      L++ + +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 401 ELQNAKNHLETLELFSYHLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|111115001|ref|YP_709619.1| tRNA modification GTPase TrmE [Borrelia afzelii PKo]
 gi|122956413|sp|Q0SNY5|MNME_BORAP RecName: Full=tRNA modification GTPase mnmE
 gi|110890275|gb|ABH01443.1| thiophene and furan oxidation protein [Borrelia afzelii PKo]
          Length = 464

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 139/461 (30%), Positives = 239/461 (51%), Gaps = 31/461 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGR---I 60
           + I A++T  L SA+ +IR SG S       I          A  ++ Y + LD      
Sbjct: 9   DDIVALATPFLSSALCVIRSSGASSISKFSKIFSNHSALNSAAGNTIHYGYILDNENNCK 68

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ ++ ++ +P+SFTG+D+ E   HG +  +  I++   K    R+A PGEF+ R+F  
Sbjct: 69  VDEVVVCLYRAPKSFTGQDAVEVIAHGSVIGIKKIIDLFLK-SGFRMAEPGEFTFRSFLA 127

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            KIDL +AE++ ++I ++T     L++  +SG L          + +  S +   LD+  
Sbjct: 128 KKIDLTKAEAINEIIFAKTNKAYSLAVNKLSGALFVKIDTIKKCILNFLSAVSVYLDYEV 187

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           ++   +     +LN  + LK  I S+    K+ E I +G  +V+ G  NAGKSSLFN   
Sbjct: 188 DDREIDIPFDLILNSKVELKKLIDSY----KVYEKIDHGITLVLAGSVNAGKSSLFNLFL 243

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++   ++ A 
Sbjct: 244 KKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNSLIKEAS 303

Query: 301 LILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH----------L 342
           L++ + +I+S   + ++ F      N   +F+  K DL  +  TEE+            +
Sbjct: 304 LVIYVIDISSNLTRDDLLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSSVLNSSNLIM 363

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMASLNEKD 399
           IS    EG++ L +KI++++S +  ++     I S  R +  L +     L++ S  ++ 
Sbjct: 364 ISIKNLEGIDILYDKIRTLISYERVEIGLDDIIISSSRQIQLLEKAYALILDLLSKIDRQ 423

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 424 VSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|219685816|ref|ZP_03540625.1| tRNA modification GTPase TrmE [Borrelia garinii Far04]
 gi|219672649|gb|EED29679.1| tRNA modification GTPase TrmE [Borrelia garinii Far04]
          Length = 464

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 143/473 (30%), Positives = 249/473 (52%), Gaps = 55/473 (11%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGLD 57
           + I A++T  L SA+ +IR SG S       I K  K F   ++L         Y + LD
Sbjct: 9   DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALNSAPGNTIHYGYILD 62

Query: 58  GR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                 +D+ ++ ++ +P+SFTG+DS E   HG +  +  I++   K    R+A PGEF+
Sbjct: 63  NENNCKVDEVVVCLYRAPKSFTGQDSIEVIAHGSVIGIKKIIDLFLK-SGFRMAEPGEFT 121

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL----SSLYGQWIDKLTHIRS 170
            R+F   KIDL +AE++ ++I ++T     L++  +SG L     ++ G  ++ L+ +  
Sbjct: 122 LRSFLAKKIDLTKAEAINEIIFAKTNKTYSLAVNKLSGALFVKIDAIKGCILNFLSAVSV 181

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           +++ ++D  E     +     +LN    LK  I+S+    K+ E I +G  +V+ G  N 
Sbjct: 182 YLDYEVDDHE----ISIPFDLILNSKAELKKLINSY----KVYEKIDHGVTLVLAGSVNV 233

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSLFN   KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+
Sbjct: 234 GKSSLFNMFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIE 293

Query: 291 RTFLEVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH- 341
           ++   ++ A L++ + +++S   +++  F      N   +F+  K DL  +  TEE+   
Sbjct: 294 KSNSLIKEASLVIYVIDVSSNLTREDFLFIDSNKSNSKILFVLNKIDLNINKSTEEFVRS 353

Query: 342 ---------LISSFTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVR 388
                    +IS+   EG++ L +KIK+++S  ++K+       I S  R +  L +   
Sbjct: 354 NVLNSSNLIMISTKNLEGIDILYDKIKTLIS--YEKVEIGLDDIIISSSRQMQLLEKAYA 411

Query: 389 -YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L++ +  ++    D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 412 LVLDLLNKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|71894377|ref|YP_278485.1| tRNA modification GTPase TrmE [Mycoplasma synoviae 53]
 gi|123644156|sp|Q4A647|MNME_MYCS5 RecName: Full=tRNA modification GTPase mnmE
 gi|71851165|gb|AAZ43774.1| tRNA modification GTPase ThdF/TrmE [Mycoplasma synoviae 53]
          Length = 463

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 155/471 (32%), Positives = 244/471 (51%), Gaps = 39/471 (8%)

Query: 1   MNHEK--ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY-FFGL 56
           MN++   +TI A+S+G  +   ISIIR+SG +   +   I   K       ++ Y F   
Sbjct: 1   MNYQSYSDTICAISSGNNINQPISIIRISGKNAQSIVSKIFSGK--VGENKTITYGFIKE 58

Query: 57  DGRILDKGLLIVF-PSPE-------SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLA 108
           +  I+D+ L+  F   P+       ++ GE   E + HGG+ V N ILE L      RLA
Sbjct: 59  NSEIVDEVLVSWFLGEPQGDITVYNNYVGEPLIEINAHGGMIVTNKILELLIS-NGARLA 117

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
            PGEF+RRAF NGK+DL +A+++ +LI S+T +Q R     + G  S +    + +L+ +
Sbjct: 118 EPGEFTRRAFLNGKLDLSKADAIHNLIMSKTRLQARNEASKLKGSASKVIKDLLKELSLL 177

Query: 169 RSFIEADLDFSE-----EEDVQNFSSKEVLNDILFLKNDISSHISQ-GKLGEIIRN---G 219
              IE  +D+ E     EED++  +SKE +N  L   N + + + +  K  E   N   G
Sbjct: 178 IGSIEVGIDYPEYIDDYEEDLK-ANSKEDIN--LTRINKLIARLEKIVKSSETALNYFEG 234

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKSSL N + K+D AIVT++ GTTRD++     L+ ++ KI DTAGIR+
Sbjct: 235 IKLAIVGKPNVGKSSLLNTMLKEDKAIVTNVAGTTRDIVEGIYYLDNFIFKIIDTAGIRK 294

Query: 280 TDDIVEKEGIKRTFLEVENADLIL-LLKEINSK-------KEISFPKNIDFIFIGTKSDL 331
           T   +EK GI+R++  + +AD++L L   +NS+       K+I    N ++I +  KSDL
Sbjct: 295 TRQEIEKIGIERSYKAILDADIVLHLFDNLNSEDEFDLDIKKIVQENNKNYIKVVNKSDL 354

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            S      D +  S     ++ L + +  I S  F      I +  R +    +++ Y  
Sbjct: 355 KSDIKWSDDFIKISAKNNDIKNLEDHLLKIYSG-FDFNSEDIFATARQIKLFKESLEY-A 412

Query: 392 MASLNEKDCGLDIIAENLRLASV--SLGKITGCVDVEQLLDIIFSKFCIGK 440
            A+  E    L  I   + L ++  +L  I G  + E LLD +F  FC+GK
Sbjct: 413 YAAREEIKNQLTYITAIVDLNNLFDTLQLIIGNSNREDLLDEMFKNFCLGK 463


>gi|15646061|ref|NP_208243.1| tRNA modification GTPase TrmE [Helicobacter pylori 26695]
 gi|14195258|sp|O25991|MNME_HELPY RecName: Full=tRNA modification GTPase mnmE
 gi|2314627|gb|AAD08492.1| thiophene and furan oxidizer (tdhF) [Helicobacter pylori 26695]
          Length = 461

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 228/455 (50%), Gaps = 27/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AISII++SG +   + + + +K+   PR A +   F  +G +LDK L
Sbjct: 14  DTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVHDIFS-NGVLLDKAL 72

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 73  VIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 131

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 132 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 191

Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241
           +F     LN    I   K+ +    +Q +     RN G+ + I+G  NAGKSSL NA+  
Sbjct: 192 DFLDGVSLNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+
Sbjct: 247 EERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDI 306

Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           IL + +++   E      ID         I +  K+DL      E            LE 
Sbjct: 307 ILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYTLLET 366

Query: 354 LINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDII 405
                K+ L +  +K+    P     +K  L  L+Q +       E+ +       L++ 
Sbjct: 367 NTLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKIALENAITELQNAKNHLETLELF 426

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 427 SYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 461


>gi|213021691|ref|ZP_03336138.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 309

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/310 (34%), Positives = 170/310 (54%), Gaps = 22/310 (7%)

Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209
           + G  S+     ++ LTH+R ++EA +DF +EE +   S  ++   +  +  D+ +  ++
Sbjct: 3   LQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLNGVIADLDAVRTE 61

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL   + ++G  +
Sbjct: 62  ARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 121

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPK 318
            I DTAG+R+ +D VE+ GI+R + E+E AD +L + +  +   +             PK
Sbjct: 122 HIIDTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPK 181

Query: 319 NIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           N+    +  K+D+       +E   H    +S+ TGEG++ L N +K  +      +   
Sbjct: 182 NLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFD-TNMEGG 240

Query: 373 IPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
             + +RHL  L++   +LE   A L     G +++AE LRLA  SL +ITG    + LL 
Sbjct: 241 FLARRRHLQALAEAANHLEQGKAQLLGAWAG-ELLAEELRLAQQSLSEITGEFTSDDLLG 299

Query: 431 IIFSKFCIGK 440
            IFS FCIGK
Sbjct: 300 RIFSSFCIGK 309


>gi|91202839|emb|CAJ72478.1| similar to universal bacterial GTPase ThdF/TrmE [Candidatus
           Kuenenia stuttgartiensis]
          Length = 468

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 147/476 (30%), Positives = 248/476 (52%), Gaps = 53/476 (11%)

Query: 5   KETIFAVSTGALPSAISIIRLSG----PSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           ++TI  V+T A  S  ++IR+SG    PS  ++  F+           +L+ F  + G I
Sbjct: 6   QDTILTVATPAGRSFHAVIRVSGSEAIPSIHEI--FVPSANIKL---ENLQTFVSIKGCI 60

Query: 61  L-------DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-----NLRLA 108
                      +L V   P S+T ED  E H  GG  +   IL+ + +        LRL+
Sbjct: 61  CLPAESLKIPAVLYVMRQPHSYTKEDIVEIHTLGGRPIGEMILQYILQKKEGLKDGLRLS 120

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
            PGEF++RAF +G+IDL +AE++ +LI S+++ +  L++  +SG  S       +K+T +
Sbjct: 121 RPGEFTKRAFLHGRIDLAQAEAIKNLIRSQSDSELDLAILQLSGNASLRIKDIQNKITSL 180

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
            ++IE  +DFS++ D++  S  E++N +  ++NDI + +++    +I     + V+ G  
Sbjct: 181 CTYIEMSIDFSDQ-DIELISRMEMINKMEDIRNDIVNLMNKPLTDKISSEEIRTVLYGKP 239

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           N GKSSL NAL  +  AIV+D PGTTRD++T  L++     K++D AG  E  + V  + 
Sbjct: 240 NVGKSSLINALLGEKRAIVSDRPGTTRDMVTGVLEIGSVCFKLTDIAGFDEAREPVFLQA 299

Query: 289 IKRTFLEVENADLILLLKEINSKKEI-SFPKN-----IDFIFIGTKSDLY---------- 332
            ++    +++A L+LL+   N K +I S   N      + I +  K DL           
Sbjct: 300 REKAQGALKSAHLLLLVFAGNEKMDIQSLEINHSEVANNVIVVVNKCDLMPESSSFELPE 359

Query: 333 --STYTEEYDHLISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYH---LSQ 385
               YT  Y   +S+ TGEGLE    ++K+++ +K    ++  S   H  ++Y    + +
Sbjct: 360 EVKKYTVVY---VSALTGEGLE----RLKTLMFDKVLAGQIERSNTLHFFNVYQKDAMQR 412

Query: 386 TVRYLEMASLNEKDCGLD-IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   +E A  + +D   D  IA +LR+A   LG++ G +  E +LD IF +FCIGK
Sbjct: 413 SYERIEQAIASFRDTMSDEFIAMDLRMAVDILGEVVGEITTEDILDKIFQEFCIGK 468


>gi|157781593|gb|ABV72151.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           ratti]
          Length = 270

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 162/271 (59%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LDGRILDKG 64
           +ST     AISI+RLSG    ++ + + +  KK   +  S    +G      + +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVRLADKVYRGGKKSLSQVPSHTIHYGHIVDPKNQQVIDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ +  +P++FT ED  E + HGG+ VVN IL+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSIMLAPKTFTREDVVEINCHGGMIVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAIDLALNQLDGNLSALIRSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     ++  I + ++  K G+++R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTRLLLEKATMIQRSIQTLLATSKQGKVLREGLSTAIIGRPNVGKSSLLNYLLQEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|203284100|ref|YP_002221840.1| thiophene and furan oxidation protein [Borrelia duttonii Ly]
 gi|226704780|sp|B5RL05|MNME_BORDL RecName: Full=tRNA modification GTPase mnmE
 gi|201083543|gb|ACH93134.1| thiophene and furan oxidation protein [Borrelia duttonii Ly]
          Length = 464

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 143/473 (30%), Positives = 238/473 (50%), Gaps = 49/473 (10%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKA------SLRYFF 54
            +++ I A++T    SA+ +IR SG S  +      K  K F  P K       ++ Y +
Sbjct: 6   QKEDDIVALATPFFSSALCVIRSSGVSAIE------KFSKMFSDPSKLLEASGHTIHYGY 59

Query: 55  GLDGRI---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
            LD      LD+ ++ ++ +P+SFTG+DS E   HG +  +  I++   K+   R+A PG
Sbjct: 60  ILDNETKEKLDEVVVCLYRAPKSFTGQDSIEVMAHGSLIGIRRIIDFFLKV-GFRMAEPG 118

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+ R+F  GK+DL +AE++ +LIS++T     L++  +SG L          + +  S 
Sbjct: 119 EFTLRSFLAGKLDLTKAEAINELISAKTRQVHALAVNKLSGSLFDKIDLIKKDILNFLSA 178

Query: 172 IEADLDFSEEEDVQNFSSKEVL---NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           I   LD+  +++       EV+   + IL  K+++   I        + NG  +V+ G  
Sbjct: 179 ISVYLDYETDDN-------EVVIPVDIILKSKSELERLIDSYDTARKLENGVTLVLAGSV 231

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           N GKSSLFN L K+D AIV+   GTTRD +    + +G L  + DTAG+RET D VE+ G
Sbjct: 232 NVGKSSLFNLLLKEDRAIVSSYAGTTRDYIQASFEFDGILFNVFDTAGLRETSDFVEQLG 291

Query: 289 IKRTFLEVENADLILLLKEINSKKEISFPKNID-------FIFIGTKSDL-YSTYTEEYD 340
           I R+   ++ A LI  + +++ K      K ID        +F+  K DL  +  T E+ 
Sbjct: 292 IVRSNSLIKEASLIFYVVDLSGKLTDDDLKFIDAYKEDSRVLFVLNKVDLEQNNQTVEFF 351

Query: 341 H----------LISSFTGEGLEELINKIKSILSNKFKKLP---FSIPSHKRHLYHLSQTV 387
           +           IS+ T  G+  L ++I+S+++  + K       I S ++         
Sbjct: 352 NSNNVVSLNTVKISTKTLFGINSLYDRIRSLIAVDYMKTSDYDVVISSTRQAELLKRAYA 411

Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +E+ S  E++   D++A ++      LG+ITG V  + +LD +F  FC+GK
Sbjct: 412 LIIELLSKIEQNISYDMLAFDVYEVVNVLGEITGEVTSDDVLDNMFKNFCLGK 464


>gi|109946790|ref|YP_664018.1| tRNA modification GTPase TrmE [Helicobacter acinonychis str.
           Sheeba]
 gi|122973443|sp|Q17ZA7|MNME_HELAH RecName: Full=tRNA modification GTPase mnmE
 gi|109714011|emb|CAJ99019.1| thiophene and furan oxidizer [Helicobacter acinonychis str. Sheeba]
          Length = 450

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 146/458 (31%), Positives = 234/458 (51%), Gaps = 33/458 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI AV+T     AISI+++SG +   + + + KK+   PR A +   F  +  +LDK L
Sbjct: 3   DTIAAVATPLGKGAISIVKISGNNALNILKQLTKKQDFTPRYAYVCDIFS-NNILLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  AIYFKAPYSFTGEDVCEIQCHGSPLLTQNILQACLNL-GARLAQAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +  + L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASIRLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLNDI-LFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +F     LN++ L L+  I+S    +    + +    G+ + I+G  NAGKSSL NA+  
Sbjct: 181 DF-----LNEVSLSLEKQIASFKDLLDFSNMQKQKNKGHALSIIGKPNAGKSSLLNAMLL 235

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+
Sbjct: 236 EERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESVDKIERLGIEKSLKSLENCDI 295

Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEY--DHLISSFTGEGL 351
           IL + +++   E      ID         I +  K+DL      E    HL   ++   L
Sbjct: 296 ILSVFDLSKPLEKEDFNIIDALNRTKKPCIVVLNKNDLSPKLELEVLKSHLQIPYS--ML 353

Query: 352 EELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GL 402
           E      K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L
Sbjct: 354 ETNTLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQK-NALENAITELQNAKNHLETL 412

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ + ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 413 ELFSYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|157781565|gb|ABV72137.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           sulfureus]
          Length = 270

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/271 (36%), Positives = 159/271 (58%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LDGRILDKG 64
           +ST     AISI+RLSG    ++ + + K   K     AS    +G      D +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVEIADRVFKAGSKQLVNVASHTIHYGHIVDPKDDKLMDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +L+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPKTFTREDVIEINCHGGIVVVNQLLQLLLRQ-GARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLALNQLDGNLSHLIRALRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +K  I S +   + G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EEMTTRLLLEKATQVKAQIESLLQTAQQGKILREGLDTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLVDTA 270


>gi|145347727|ref|XP_001418313.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578542|gb|ABO96606.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 525

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/422 (30%), Positives = 206/422 (48%), Gaps = 34/422 (8%)

Query: 47  KASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLR 106
           KA+       DG I+D+ + + F +P S+T ED  E H HGG   V   +         R
Sbjct: 110 KATYGVVVDGDGEIIDEVIALAFIAPRSYTAEDVVELHCHGGAVCVQRAMARCLD-EGAR 168

Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166
           LA  GEF+ RAF NG++DL +AE++  L+S++T      ++  M G L++   +      
Sbjct: 169 LARNGEFTLRAFLNGRLDLTQAEAVHALVSAKTTAAADSALAAMRGGLTTPVSEARRACV 228

Query: 167 HIRSFIEADLDFSEEE---DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
            + + +EA LDF +E    DV+   +K         +  I   ++  K G ++  G  + 
Sbjct: 229 DLLAELEARLDFDDEMVPLDVRAIEAKAA-----GARETIRKVLTTAKRGALLETGVTVA 283

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDD 282
           I+G  N GKS L NAL + + +IVT   GTTRDV+   +++ G    + DTAGIR ETDD
Sbjct: 284 IVGRPNVGKSRLLNALTRSERSIVTSREGTTRDVVEASVNIGGLPATLLDTAGIRSETDD 343

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNI--DFIFIGTKSD 330
            VEK G++R+      AD+++L+ +             + EI+         + +  K+D
Sbjct: 344 EVEKIGVERSRAAAAGADIVVLVVDAERGWVSEDSAIWQSEIANNARARGSSVLVVNKTD 403

Query: 331 L--YSTYTEEYDHL--------ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRH 379
           +   S  T   + L        +S+ TG+ LE L + I +++   +      +  +++R 
Sbjct: 404 IADASNATPPPEVLESFSTVVHVSAATGDNLEHLEHAIVRTVSGGEVDAEGGAWAANQRQ 463

Query: 380 LYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
              L   +  L+ +      D  LD    +LR A+ +LG +TG    E +LD IF +FCI
Sbjct: 464 AEALQNALDSLDRLRDTIAADMPLDFWTIDLREAAFALGSVTGDDVTEDVLDTIFERFCI 523

Query: 439 GK 440
           GK
Sbjct: 524 GK 525


>gi|317014865|gb|ADU82301.1| tRNA modification GTPase TrmE [Helicobacter pylori Gambia94/24]
          Length = 450

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 140/455 (30%), Positives = 232/455 (50%), Gaps = 27/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AISII++SG +   + + + +K+   PR A +   F  +G +LDK L
Sbjct: 3   DTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVCDIFS-NGVLLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E+   LI  E E         + GEL     +  + L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIPS 180

Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241
           +F  +   N    I   K+ +    +Q +     RN G+ + I+G  NAGKSSL NA+  
Sbjct: 181 DFLKEVSFNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 235

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ A+V++I GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+
Sbjct: 236 EERALVSNIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDI 295

Query: 302 ILLLKEINS---KKEISFPKNID-----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           IL + +++    K++ +    ++      I +  K+DL      E            LE 
Sbjct: 296 ILGVFDLSKPLEKEDFNLMDTLNRAKKPCIVVLNKNDLVPKLELEILKSYLKIPYSILET 355

Query: 354 LINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDII 405
                K+ L +  +K+    P     +K  L  L+QT        E+ +       L++ 
Sbjct: 356 NTLNSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQTTALENAITELQNAKSHLETLELF 415

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 416 SYHVLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450


>gi|157781613|gb|ABV72161.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           cecorum]
          Length = 270

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/271 (35%), Positives = 158/271 (58%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLDGR---ILDKG 64
           +ST     AIS++RLSG    ++ +  F+  KKK     + ++ Y    D +    LD+ 
Sbjct: 1   ISTAPGEGAISMVRLSGSQALEIADEIFVAGKKKLSQVDSHTIHYGHIYDDKREGFLDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGG+ V N IL+ L      RLA PGEF++RAF NG+ID
Sbjct: 61  MVSVLKAPKTFTREDIIEINCHGGMVVTNQILQ-LVLRKGARLAEPGEFTKRAFLNGRID 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+   +++ + + G LS+L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIQAKTDQSMQMAYQQLEGRLSTLIKSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +S+ +L     ++  I   +     G+I+R G +  I+G  N GKSSL N L  ++ 
Sbjct: 180 EEMTSQLMLTTAKHIEEKIEQLLKTATQGKILREGLQTAIIGRPNVGKSSLLNYLLDEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVNGVPLKLIDTA 270


>gi|157781597|gb|ABV72153.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           gallinarum]
 gi|157781599|gb|ABV72154.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           gallinarum]
          Length = 270

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/271 (35%), Positives = 157/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGLDG---RILDKG 64
           +ST     AISI+RLSG     + + +    KKK       ++ Y    D    +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGEQAISIADAVFQSGKKKLIDVSSHTIHYGHIFDPEKYQMMDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ +   P++FT ED  E + HGGI VVN IL+ L      RLA PGEF++RAF NG++D
Sbjct: 61  MVSIMRKPKTFTREDIVEINCHGGIVVVNQILQ-LVLRQGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS L  Q   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLAINQLDGNLSRLIRQLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     ++  I + +   + G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTRLLLEKANQVQKQIQALLQTAQQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLVDTA 270


>gi|187918053|ref|YP_001883616.1| tRNA modification GTPase TrmE [Borrelia hermsii DAH]
 gi|119860901|gb|AAX16696.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Borrelia hermsii DAH]
          Length = 464

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 144/472 (30%), Positives = 237/472 (50%), Gaps = 47/472 (9%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGRI 60
             ++ I A++T  L SA+ +IR SG S       I    K        ++ Y + +D   
Sbjct: 6   QREDDIVALATPFLSSALCVIRSSGVSSIDKFSKIFSDPKRLLEAPGHTIHYGYIIDKET 65

Query: 61  ---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              LD+ ++ ++ +P+SFTG+DS E   HG +  +  I++   K+   R+A PGEF+ R+
Sbjct: 66  CEKLDEVVVCLYRAPKSFTGQDSIEVMAHGSLIGIKRIIDFFLKV-GFRMAEPGEFTLRS 124

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F  GK+DL +AE++ +LIS++T     L++  +SG L +        + +  S +   LD
Sbjct: 125 FLAGKLDLTKAEAVNELISAKTNKTHALAVNNLSGSLFTKIDLIKKDILNFLSALSVHLD 184

Query: 178 FSEEE-------DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           +  +E       DV + S  E       LK  I S+ +  KL     +G  +V+ G  N 
Sbjct: 185 YETDEYEVVIPFDVISKSRDE-------LKRLIDSYDTARKLD----HGITLVLAGSVNV 233

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSLFN L K+D AIV+   GTTRD +    +L+G L  + DTAG+RET D VE+ GI 
Sbjct: 234 GKSSLFNLLLKEDRAIVSSYAGTTRDYIQASFELDGILFNVFDTAGLRETSDFVEQLGIV 293

Query: 291 RTFLEVENADLILLLKEINSKKEISFPKNID-------FIFIGTKSDLYSTYTEEYDHL- 342
           R+   ++ A L+L + +++++      K ID        +F+  K DL    ++  D   
Sbjct: 294 RSNSLIKEASLVLYVIDLSARLTNDDLKFIDSYMGHSKVLFVLNKMDLEQD-SQTVDFFN 352

Query: 343 -----------ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY 389
                      IS+ T  G++ L +KI+S+    +  +     I S  R +  L +    
Sbjct: 353 SGNINSSNLVKISTKTLFGIDSLYDKIRSLTCFDYIDINAYDVIVSSSRQVELLKKAYTL 412

Query: 390 -LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +E+ +  E+D   D++A ++      LG+ITG V  E +L+ +F  FC+GK
Sbjct: 413 IIELLNKIEQDISYDMLAFDVYEVINLLGEITGEVTSEDVLNNMFKNFCLGK 464


>gi|157781601|gb|ABV72155.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           gallinarum]
          Length = 270

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 157/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGLDG---RILDKG 64
           +ST     AISI+RLSG     + + +    KKK       ++ Y    D    +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGEQAISIADAVFQSGKKKLIDVSSHTIHYGHIFDPEKYQMMDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ +   P++FT ED  E + HGGI VVN IL+ L      RLA PGEF++RAF NG++D
Sbjct: 61  MVSIMRKPKTFTREDVVEINCHGGIVVVNQILQ-LVLRQGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS L  Q   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLAINQLDGNLSRLIRQLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     ++  I + +   + G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTRLLLEKANQVQKQIQALLQTAQQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRD++   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDIIEEYVNVRGVPLKLVDTA 270


>gi|317011582|gb|ADU85329.1| tRNA modification GTPase TrmE [Helicobacter pylori SouthAfrica7]
          Length = 450

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 150/479 (31%), Positives = 232/479 (48%), Gaps = 75/479 (15%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T     AISI+++SG +   + + + KK+   PR A +   F  +  +LDK L
Sbjct: 3   DTIAAIATPLGKGAISIVKISGNNALNILKQLTKKQDFTPRYAYVCDIFS-NNILLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+DL
Sbjct: 62  VIYFKAPYSFTGEDVCEIQCHGSPLLTQNILQACLNL-GARLAQAGEFSKKAFLNHKMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182
            E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+   
Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARSNLLKLLASSEVLIDYSEEDIPS 180

Query: 183 DVQNFSSKEVLNDILFLKN--DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           D  N  S+ +   I   K+  D S+   Q         G+ + I+G  NAGKSSL NA+ 
Sbjct: 181 DFLNEVSQNLEKQIASFKDLLDFSNMQKQK------NKGHALSIIGKPNAGKSSLLNAML 234

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D
Sbjct: 235 LEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESMDEIERLGIEKSLKSLENCD 294

Query: 301 LILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           +IL + +++   E      ID         I +  K+DL                  GLE
Sbjct: 295 IILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKNDLAPKL--------------GLE 340

Query: 353 ELINKIKSILSNKFKKLPFSI-----PSHKRHLYHLSQ----------TVRYLEMASLNE 397
                   IL + F K+P+SI      + K  L  LSQ          T   L + SL +
Sbjct: 341 --------ILKSYF-KIPYSILETNTLNSKACLKDLSQQISAFFPKLDTQNKLLLTSLAQ 391

Query: 398 KDC----------------GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           K+                  L++ + ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 392 KNALENAIIELQNAKNHLETLELFSYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|157781557|gb|ABV72133.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           malodoratus]
          Length = 270

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/271 (35%), Positives = 158/271 (58%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LDGRILDKG 64
           +ST     AISI+RLSG     + + + K  KK   +  S    +G      D +I+D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVAIADNVYKSGKKSLEQVPSHTIHYGHIIDPADQQIVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +L+ + +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPKTFTREDIVEINCHGGIVVVNQLLQLILR-SGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    +++  + G LS L  Q   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDRAMSVAINQLDGNLSHLIRQLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +   I + +   K G+I+R G    I+G  N GKSSL N L  ++ 
Sbjct: 180 EELTTQLLLEKAQQVGQQIKALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVT+I GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781571|gb|ABV72140.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           moraviensis]
          Length = 270

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/272 (36%), Positives = 162/272 (59%), Gaps = 9/272 (3%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKASLRYFFGLDGR---ILDK 63
           +ST     AISI+RLSG     + + +     K+    P   ++ Y   LD +   +LD+
Sbjct: 1   ISTPPGEGAISIVRLSGDQAIAIADKVYRSGSKQLLDVPTH-TIHYGHILDPKDESLLDE 59

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++ V  +P++FT ED  E + HGGI VVN +L+ L +    RLA PGEF++RAF NG++
Sbjct: 60  VMVSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARLAEPGEFTKRAFLNGRM 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ DLI ++T+    ++++ + G LSSL      ++    + +E ++D+ E +D
Sbjct: 119 DLSQAEAVMDLIRAKTDRAMHVALDQLDGNLSSLIRSLRQEILETLAQVEVNIDYPEYDD 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL N L +++
Sbjct: 179 VEELTTKLLLEKAGFVKAQIEGLLTTAKQGKILREGLSTAIIGRPNVGKSSLLNHLLREE 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 239 KAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|206603436|gb|EDZ39916.1| tRNA modification GTPase TrmE [Leptospirillum sp. Group II '5-way
           CG']
          Length = 445

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 133/452 (29%), Positives = 221/452 (48%), Gaps = 25/452 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGLDGRILDK 63
           + I + +T  +   + IIRLSG   F       +   ++P PR+        +DG+ +D 
Sbjct: 2   DPIVSAATRLISQPVGIIRLSGNGLFPKFSTLMVPPMEEPDPRRVYRIQVRDIDGQTIDD 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ F SP S TGED  E  +HG    +  I+   A     R A PGEF  RA+ + KI
Sbjct: 62  GLLLYFKSPHSLTGEDVLELQLHGNPHSLRKIISH-AICLGARQARPGEFLYRAYLHHKI 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSS----LYGQWIDKLTHIRSFIEADLDFS 179
            LL+AESL  LI + +    R   +  SG+  S    L  QW+D +          LD S
Sbjct: 121 SLLKAESLNKLIQAPSFEHYRSQFQEYSGQKESPIEILRDQWMDLI----GLFYVALDHS 176

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +++ V     + ++  I  + + I  +       +    G+ ++I G  N+GKSSLFN L
Sbjct: 177 DDDIV--IEKEMIVQRIQDILDSIRLYRKAYMRAKKRWRGFSVLITGPVNSGKSSLFNRL 234

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
                A+V+DIPGTTRD+L   +  E   + + D+AG R+T D +EK+GI+R   E ++ 
Sbjct: 235 LGDSRALVSDIPGTTRDLLEGRISSEYGDIILLDSAGFRKTGDDIEKQGIRRAIKESKDV 294

Query: 300 DLILLLK--EINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
            LIL +   E+N+  EI   K    I  +  K DL      + D  +SS T +G+  L +
Sbjct: 295 SLILWVNSPEMNTNPEIVIGKRKSGILRVWNKCDLRPAGIGQADFEVSSRTRKGISRLYH 354

Query: 357 KIKSILSNKFKK--------LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            ++    + +++        +   + SH+++L+ L +  ++L     + ++   +I+  +
Sbjct: 355 FLEEKARSYYQEESEEEGNLMEGVLSSHRQYLF-LDRLAKHLVSLKDSLENRSWEILLHD 413

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L   +  +   +G V  + + D +F  FCIGK
Sbjct: 414 LERYNQEIQLASGLVTHQMIYDRVFQSFCIGK 445


>gi|157781569|gb|ABV72139.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           haemoperoxidus]
          Length = 270

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/272 (36%), Positives = 162/272 (59%), Gaps = 9/272 (3%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKASLRYFFGLDGR---ILDK 63
           +ST     AISI+RLSG     + + +     K+    P   ++ Y   LD +   +LD+
Sbjct: 1   ISTPPGEGAISIVRLSGDEAVAIADKVYRSGSKQLLDVPSH-TIHYGHILDPKDDSLLDE 59

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++ V  +P++FT ED  E + HGGI VVN +L+ L +    RLA PGEF++RAF NG++
Sbjct: 60  VMVSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARLAEPGEFTKRAFLNGRM 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ DLI ++T+    ++++ + G LSSL      ++    + +E ++D+ E +D
Sbjct: 119 DLSQAEAVMDLIRAKTDRAMHVALDQLDGNLSSLIRSLRQEILETLAQVEVNIDYPEYDD 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL N L +++
Sbjct: 179 VEELTTKLLLEKAGFVKAQIEGLLTTAKQGKILREGLSTAIIGRPNVGKSSLLNHLLREE 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 239 KAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|124516564|gb|EAY58072.1| TRNA modification GTPase TrmE [Leptospirillum rubarum]
          Length = 445

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 137/457 (29%), Positives = 218/457 (47%), Gaps = 35/457 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGLDGRILDK 63
           + I + +T  +   + IIRLSG   F       I   ++P PR+         DG+ +D 
Sbjct: 2   DPIVSAATRLISQPVGIIRLSGNGLFPKFSTLMIPPMEEPEPRRIYRIRVRDRDGQPIDD 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ F SP S TGED  E  +HG    +  I+   A     R A PGEF  RA+ + KI
Sbjct: 62  GLLLYFKSPHSLTGEDVLELQLHGNPHSLRKIISH-AICLGARQARPGEFLYRAYLHHKI 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSS----LYGQWIDKLTHIRSFIEADLDFS 179
            LL+AESL  LI + +  Q R   +  SG+  S    L  QW+D +          LD S
Sbjct: 121 SLLKAESLNKLIQAPSFEQYRSQFQEYSGQRRSPIDLLREQWMDLI----GLFYVALDHS 176

Query: 180 E-----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           E     E+D+     +++L  I   +        + K       G+ ++I G  N+GKSS
Sbjct: 177 EDDIVVEKDLILQRIQDILESIRLYRKAYRHSKKRWK-------GFSVLITGPVNSGKSS 229

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           LFN L     A+V+DIPGTTRD+L   +  E   + + D+AGIR+T D +EK+GI+R   
Sbjct: 230 LFNRLLGDSRALVSDIPGTTRDLLEGRISSEFGDIILLDSAGIRKTGDDIEKQGIRRAIK 289

Query: 295 EVENADLILLLK--EINSKKEISFPKN-IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           E+ +  L+L +   +++S  EI   K     + +  K DL        D  +SS T +G+
Sbjct: 290 EINDVSLVLWVNSPDMDSNPEIVIGKRKTGIVRVWNKCDLRPAGKGHSDFEVSSRTRKGI 349

Query: 352 EELINKIKSILSNKFK--------KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
             L   ++    + ++         L   + SH+++L+ L +  ++L     + +    +
Sbjct: 350 SRLYRFLEEKAQSYYQDENEEEGNLLEGDLSSHRQYLF-LDRLAKHLVSLRDSLEQRSWE 408

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  +L   +  +   +G V  + + D +F  FCIGK
Sbjct: 409 ILLHDLERYNQEIQLASGLVTHQMIYDRVFQSFCIGK 445


>gi|157781573|gb|ABV72141.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           faecalis]
 gi|157781575|gb|ABV72142.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           faecalis]
          Length = 270

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 160/271 (59%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LDGRILDKG 64
           +ST     AISI+RLSG     +   + +   K   +  +    +G      + +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQNDQLIDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +L V  +P++FT ED  E + HGGI VVN +L+ L +    R+A PGEF++RAF NG++D
Sbjct: 61  MLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMAEPGEFTKRAFLNGRMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|326436265|gb|EGD81835.1| hypothetical protein PTSG_02550 [Salpingoeca sp. ATCC 50818]
          Length = 395

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 213/448 (47%), Gaps = 73/448 (16%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-LDGRILD 62
           + ETIFA+S+G + + +++IR+SGP        + K   P  R AS+R  F  L G +LD
Sbjct: 10  QGETIFALSSGGVRAGVAVIRVSGPQAHDSITQLTKAAAPPARLASVRKLFDPLSGDMLD 69

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
             L++ F    SFTGE  AEF VHGG AVV+ +L+ L  +  LR A PGEF+RR+F N +
Sbjct: 70  HALVLRFDEGHSFTGEAIAEFQVHGGNAVVSSVLKALEGVEGLRHAEPGEFTRRSFWNDR 129

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL + E L+DLI++ETE QR+ ++  M+G+ S +Y  W   L    + IEA +DFSEEE
Sbjct: 130 MDLTQVEGLSDLITAETEQQRKQALSYMTGKASKVYQTWKSTLLRAVAQIEAYIDFSEEE 189

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +++                D+++ + Q    +  E  R     V +  S+   SS  ++L
Sbjct: 190 NIE---------------EDVTARVDQAGVRRATEAARQADLRVCVQDSSQPPSSRCSSL 234

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEV 296
                      PG          + EG  + I +   I  T D     +      T    
Sbjct: 235 -----------PGGQGPCHCTQAN-EGETLVILNKTDISSTPDFGSDADASPTTWTPTAS 282

Query: 297 ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG-EGLEELI 355
            + D  L +  ++ K E   P  ++ +             +    L S   G  G + +I
Sbjct: 283 SHCDQGLAVFRLSCKTEQGLPAFLEAL------------EDRVRRLCSEGAGSSGTDVVI 330

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDII--AENLRLA 412
            + +                H++H   ++  ++YL+ A    K+ G +DI+  A+ +R A
Sbjct: 331 TRER----------------HRQH---VATCLQYLKEA----KEYGEVDIVSRAQMMRFA 367

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LG I G V +E +LD +F++FCIGK
Sbjct: 368 LNELGLILGSVHLEDILDELFAEFCIGK 395


>gi|157781619|gb|ABV72164.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           hermanniensis]
          Length = 270

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 97/271 (35%), Positives = 157/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LDGRILDKG 64
           +ST     AISI+RLSG    Q+ + I +  KK     +S    +G      D +I+D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVQIADSIYRSGKKSLVDVSSHTIHYGHIIDPSDQQIVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +L+ L      RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPKTFTREDIVEINCHGGIVVVNQLLQ-LVLRSGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    +++  + G LS L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNIAINQLDGNLSHLIRSLRQEILQTLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +   I + +   K G+I+R G    I+G  N GKSSL N L  ++ 
Sbjct: 180 EELTTQLLLEKSQQVGQQIDALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVT+I GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|303285410|ref|XP_003061995.1| hypothetical protein MICPUCDRAFT_21154 [Micromonas pusilla
           CCMP1545]
 gi|226456406|gb|EEH53707.1| hypothetical protein MICPUCDRAFT_21154 [Micromonas pusilla
           CCMP1545]
          Length = 545

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 142/507 (28%), Positives = 235/507 (46%), Gaps = 85/507 (16%)

Query: 4   EKETIFAVSTGALPSA--ISIIRLSGPSCFQVCEFICKKKKPFPRKASLR--------YF 53
           + ETI AV+T  +P A  ++I+RLSG +       I +   P   +ASLR          
Sbjct: 54  DSETIAAVATPVVPQAGGVAILRLSGDNALAATSRIFR---PASSRASLRRGECVSHLAL 110

Query: 54  FG-----LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGIL------------ 96
           +G       G I+D+ L++   +P S+T ED  E H HGG   V  +L            
Sbjct: 111 YGDVVDPASGEIVDEALVLPMLAPRSYTTEDVVEIHCHGGSVCVQRVLALLVNAGGDRSG 170

Query: 97  ----------EELAK---MPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143
                     EE AK   +P +RLA  GEF+ RAF NG+IDL +AE++  L+S++T +  
Sbjct: 171 SGTGGARGTDEEDAKDAAIPAVRLARAGEFTLRAFLNGRIDLTQAEAVQSLVSAKTTVAA 230

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
             ++  + G L++           + + +EA LDF +E D        V   +   +  I
Sbjct: 231 SSALASLRGGLATPVKDARRVCVDLLAELEARLDFDDEMD--PLDEDGVATSVERAEAKI 288

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
              ++  + G ++  G  + I+G  NAGKSSL NA  + + AIVT I GTTRDV+   ++
Sbjct: 289 REVLATARRGALLDAGVVVAIVGRPNAGKSSLLNAWTRSERAIVTPIAGTTRDVVEASIN 348

Query: 264 LEGYLVKISDTAGIR--ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID 321
           + G  V + DTAGIR     D VE  G++R+   +  AD+++ + + +      +    D
Sbjct: 349 VRGVPVTLLDTAGIRFGVGIDEVEAMGVERSRAALAGADVVVFVVDASE----GWTDGDD 404

Query: 322 FIFIGTKSD--------------------------LYSTYTEEYDHLISSFTGEGLEELI 355
            I  G   +                            ST T      +S+  G+G+++L 
Sbjct: 405 DILRGITGERVVIGDGDGDDDDDEDEDAGEVKDGAFASTVT------LSATRGDGVDDLE 458

Query: 356 NKIKSILSNKFKKLP-FSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLAS 413
             +  ++      +   +  +++R    L+  +  L  +     +   +D    +LR A+
Sbjct: 459 RALAEVIGGGDVDVEGAAWVANQRQAEALTTALDALSRLKDTIAEGLPVDFWTIDLREAA 518

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++LG++TG    E +LD+IF+KFCIGK
Sbjct: 519 LALGEVTGEDVAEDVLDVIFTKFCIGK 545


>gi|84995997|ref|XP_952720.1| trna modification gtpase [Theileria annulata strain Ankara]
 gi|65303717|emb|CAI76094.1| trna modification gtpase, putative [Theileria annulata]
          Length = 538

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 180/332 (54%), Gaps = 39/332 (11%)

Query: 1   MNHEKETIFAVSTGALP---SAISIIRLSGPSCFQVCEFICKKKKPFPRKASL----RYF 53
           +N   ETI+ +S+G +P     ++++R+SGP        + KK    P K       + +
Sbjct: 44  LNILNETIYGLSSG-IPEGGCGVAVVRISGPDSIHTLNLLTKKSDNVPYKPRFVKLCKLY 102

Query: 54  FGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-----LRLA 108
             ++  ++D+ L + F SP S+TG+D  E H HG   ++  + +    + N     LR A
Sbjct: 103 SLINNNLIDEPLTLYFKSPNSYTGDDVVEIHTHGNEVIIKELFDNFRHIANNYNIKLRQA 162

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
             GEF+RRA+ + K++L++ ES+ +LI S+  +Q++ S+         L   W + L  I
Sbjct: 163 ERGEFTRRAYYSNKLNLIQVESINELIRSKNHIQKQNSI---------LKVIWTNDLIDI 213

Query: 169 RSFIEADLDFSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            S +EA +DF EE   D+   ++  +L+ +  L  +I   I+  K  E I +G K+++LG
Sbjct: 214 ISKVEASIDFQEESCSDIILMNTSSILDPVQNLTQEIFKFINDKK--ETIVDGIKLLLLG 271

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RETD--- 281
            +N+GKSS  N L   D++IV++IPGTTRD++ ++ +L G   +I D+AGI  R  D   
Sbjct: 272 PTNSGKSSFINNLFNDDISIVSNIPGTTRDLIRVNYNLNGLNYQIIDSAGINNRILDGIT 331

Query: 282 --------DIVEKEGIKRTFLEVENADLILLL 305
                   D +E  GIK+   ++E +++IL L
Sbjct: 332 NWSESSDCDAIELIGIKKALDQIETSNVILFL 363


>gi|203287638|ref|YP_002222653.1| thiophene and furan oxidation protein [Borrelia recurrentis A1]
 gi|226704781|sp|B5RQZ8|MNME_BORRA RecName: Full=tRNA modification GTPase mnmE
 gi|201084858|gb|ACH94432.1| thiophene and furan oxidation protein [Borrelia recurrentis A1]
          Length = 464

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 234/467 (50%), Gaps = 37/467 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGRI 60
            +++ I A++T    SA+ +IR SG S  +    +          +  ++ Y + LD   
Sbjct: 6   QKEDDIVALATPFFSSALCVIRSSGVSAIEKFSTMFSDPSKLLEASGHTIHYGYILDNET 65

Query: 61  ---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              LD+ ++ ++ +P+SFTG+DS E   HG +  +  I++   K+   R+A PGEF+ R+
Sbjct: 66  KEKLDEVVVCLYRAPKSFTGQDSIEVMAHGSLIGIRRIIDFFLKV-GFRMAEPGEFTLRS 124

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F  GK+DL +AE++ +LIS++T     L++  +SG L          + +  S I   LD
Sbjct: 125 FLAGKLDLTKAEAINELISAKTRQVHALAVNKLSGSLFDKIDLIKKDILNFLSAISVYLD 184

Query: 178 FSEEEDVQNFSSKEVL---NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +  +++       EV+   + IL  K+++   I        + NG  +V+ G  N GKSS
Sbjct: 185 YETDDN-------EVVIPVDIILKSKSELERLIDSYDTARKLENGVTLVLAGSVNVGKSS 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           LFN L K+D AIV+   GTTRD +    + +G L  + DTAG+RET D VE+ GI R+  
Sbjct: 238 LFNLLLKEDRAIVSSYAGTTRDYIQASFEFDGILFNVFDTAGLRETSDFVEQLGIVRSNS 297

Query: 295 EVENADLILLLKEINSKKEISFPKNID-------FIFIGTKSDL-YSTYTEEYDHL---- 342
            ++ A LI  + +++ K      K ID        +F+  K DL  +  T E+ +     
Sbjct: 298 LIKEASLIFYVVDLSGKLTDDDLKFIDAYKEDSRVLFVLNKVDLEQNNQTVEFFNSNDIV 357

Query: 343 ------ISSFTGEGLEELINKIKSILSNKFKKLP---FSIPSHKRHLYHLSQTVRYLEMA 393
                 IS+ T  G+  L ++I+S ++  + K       I S ++           +E+ 
Sbjct: 358 SLNTVKISTKTLFGINSLYDRIRSFIAVDYMKTSDYDIVISSTRQAALLKRAYALIIELL 417

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S  E++   D++A ++      LG+ITG V  + +L+ +F  FC+GK
Sbjct: 418 SKIEQNISYDMLAFDVYEVVNVLGEITGEVTSDDVLNNMFKNFCLGK 464


>gi|157781561|gb|ABV72135.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           pallens]
          Length = 270

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 157/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRYFFGLDGR---ILDKG 64
           +ST     AISI+RLSG    ++ + + +  K   +K    ++ Y   +D     ++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAIEIADKVFQSGKKTLKKVDSHTIHYGHIVDPANQVLVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V   P++FT ED  E + HGGI VVN +L+ + +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRRPKTFTREDVVEINCHGGIVVVNELLQLILR-EGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    +++  + G LS L  Q   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNVAINQLDGNLSKLIRQLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++K +L     +   I + +   K G+I+R G    I+G  N GKSSL N L  ++ 
Sbjct: 180 EELTTKLLLEKAGQVSQQIDALLVNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   + + G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVSVRGVPLKLVDTA 270


>gi|157781589|gb|ABV72149.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           villorum]
          Length = 270

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/271 (35%), Positives = 161/271 (59%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLDGR---ILDKG 64
           +ST     AISI+RLSG     + +  + C KK      + ++ Y   +D +   ++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVAIADKVYRCGKKSLLEVPSHTIHYGHIIDPKTQQLVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ +  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MISIMLAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LSSL      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMGLALNQLDGNLSSLIRSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     ++  I   ++  K G+++R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTRLLLEKATMIQQQIQQLLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHLLQEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|330925757|ref|XP_003301179.1| hypothetical protein PTT_12622 [Pyrenophora teres f. teres 0-1]
 gi|311324284|gb|EFQ90706.1| hypothetical protein PTT_12622 [Pyrenophora teres f. teres 0-1]
          Length = 406

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 188/403 (46%), Gaps = 71/403 (17%)

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
            +R A PGEF+RRAF N ++DL + ESL + +S+ TE QR+LS+ G +  L++ Y  W  
Sbjct: 4   QIRYAEPGEFTRRAFANNRMDLPQIESLGETLSASTEQQRKLSVRGTTSSLAARYEHWRM 63

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSS---KEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
            L   R  +EA +DFSE++      +     V   +  L+  + +H++    GE++RNG 
Sbjct: 64  LLLQARGELEALIDFSEDQHFDESPAVLCASVAAQVDALRVLMEAHVANAVRGELLRNGI 123

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + +LG  NAGKSSL N +  +D AIV+   GTTRDV+ + LDL G+LVKI D AG+R+ 
Sbjct: 124 SVALLGAPNAGKSSLLNRVVGRDAAIVSQEAGTTRDVVEVGLDLGGWLVKIGDMAGLRKA 183

Query: 281 DDI-------VEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFI 325
             +       VEKEGI+R       ++++++++        E+    +      ID I  
Sbjct: 184 GLVGADVVGAVEKEGIRRAKQRALESNVVIVVQDATADVDPEVMVTAKQCVDSGIDVIVA 243

Query: 326 GTKSD---LYSTYTEEYDHLISSFTGEGLEELI-----------NKIKS---ILSNKFKK 368
             K+D     ST    ++  I S  G     +              IKS   IL N FK 
Sbjct: 244 INKTDRLPALSTARSAWEEKIQSTLGISSHRICFISCNETTPTAGNIKSFLDILQNTFKS 303

Query: 369 L-----PFSIPSHKRHLYHLSQTVRY----------------------------LEMASL 395
           +     P S P        L  T R                              E A+ 
Sbjct: 304 MTTALVPDSDPDPSIWQESLGATERQRLLLSESLSHLSTFLSTVADPTIADLPAFETAAH 363

Query: 396 NEKDCGLDIIAENLRLASVSLGKITG---CVDVEQLLDIIFSK 435
              +  + + AE LR A+ +L +ITG     DVE++L ++F K
Sbjct: 364 EADEVDIVVAAECLRSAADALARITGRGDNGDVEEVLGVVFEK 406


>gi|157781559|gb|ABV72134.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           pseudoavium]
          Length = 270

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/271 (34%), Positives = 157/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LDGRILDKG 64
           +ST     AISI+RLSG     + + + +  KK      S    +G      D +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVAIADSVYQSGKKSLLDVPSHTIHYGHIVDPADHQVVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +L+ + +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPKTFTREDIVEINCHGGIVVVNQLLQLILR-SGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    +++  + G LS L  Q   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDRAMNVAINQLDGNLSHLIRQLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +   I + +   K G+I+R G    I+G  N GKSSL N L  ++ 
Sbjct: 180 EELTTQLLLEKAQQVGQQIEALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVT+I GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781595|gb|ABV72152.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           mundtii]
          Length = 270

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/272 (34%), Positives = 158/272 (58%), Gaps = 9/272 (3%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDGR---ILDK 63
           +ST     AISI+RLSG     +   +     K+    P   ++ Y   +D +   ++D+
Sbjct: 1   ISTPPGEGAISIVRLSGDQALTIANKVYQSGNKQLLDVPSH-TIHYGHIVDPKSEQLVDE 59

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++ V  +P +FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG++
Sbjct: 60  VMVSVMRAPRTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRV 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ DLI ++T+    +++  + G LS+L      ++    + +E ++D+ E +D
Sbjct: 119 DLSQAEAVMDLIRAKTDKAMGVALNQLDGNLSALIRSLRQEILETLAQVEVNIDYPEYDD 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V+  ++K +L     ++  I   ++  + G+++R G    I+G  N GKSSL N L +++
Sbjct: 179 VEELTTKLLLEKAQMIQQRIEVLLATSQQGKVLREGLSTAIIGRPNVGKSSLLNHLLREE 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 239 KAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781553|gb|ABV72131.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           gilvus]
          Length = 270

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 158/271 (58%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LDGRILDKG 64
           +ST     AISI+RLSG     + + + +  KK      S    +G     ++ +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVTIADKVYRSGKKSLSDVPSHTIHYGHIIDPVEQQVVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +L+ + +    RLA PGEF++RAF NG++D
Sbjct: 61  MISVMRAPKTFTREDIVEINCHGGIVVVNQLLQLILR-SGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    +++  + G LS L  Q   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDRAMSVAINQLDGNLSHLIRQLRQEILGTLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +   I + +   K G+I+R G    I+G  N GKSSL N L  ++ 
Sbjct: 180 EELTTQLLLEKAQQVGQQIDALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVT+I GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|322381046|ref|ZP_08055074.1| tRNA modification GTPase TrmE [Helicobacter suis HS5]
 gi|321146516|gb|EFX41388.1| tRNA modification GTPase TrmE [Helicobacter suis HS5]
          Length = 455

 Score =  159 bits (402), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 225/464 (48%), Gaps = 33/464 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M     TI A++T     AI+I++LSG     +   +  +++  PR A+L   +   G +
Sbjct: 1   MTFTNSTIAAIATPPGLGAIAIVKLSGSKSLSILNALSHRQRFTPRMATLVSLYDATGDL 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L + F +P S+TGED  E   HGG+ V   ILE   K   + LA  GEF++RAF N
Sbjct: 61  LDQCLALYFKAPHSYTGEDVVELQCHGGMVVARLILEACLKQGAI-LAKGGEFTQRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            ++DL + ++LA L+ S+     ++  + + G L          L  + +  E  +D++E
Sbjct: 120 NRMDLSQVQALAKLLESQNANMVKVMAKQIKGALKDFVQTTRTALLKLLASSEVLIDYAE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+   N   + +  D+  ++  +   +   +       GY + I+G  N GKSSL NAL 
Sbjct: 180 EDLPLNLLDR-MQEDLEQIEQQLLKVLEVSRARSAKLEGYTLSIIGKPNVGKSSLLNALL 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ A+V++I GTTRD +   + L G  +KI DTAGIR ++D +E+ GI ++   ++ +D
Sbjct: 239 LEERALVSEIAGTTRDTIEEVISLYGSSLKIIDTAGIRTSNDPIERLGIAKSKQRMQESD 298

Query: 301 LILLLKEINSKKEIS-------FPKNIDFIF--IGTKSD---------LYSTYTEEYDHL 342
           +IL L +++S  +            N D I   I  K+D         L +     +   
Sbjct: 299 IILALFDLSSPLDHQDQVILELLQANQDKILCVIFNKNDCPTKLDTTALLAVLPPLFAPA 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT------VRYLEMASLN 396
           +S  T E    L+ K         K L    P+    L  L+Q       ++ L+ A   
Sbjct: 359 MSLNTKEPCLPLLKK-------ALKPLFEHNPNDSLILATLTQQNSLELGIKSLQSAKKP 411

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   L++ + +++ A  S+  I+     +++LD +F +FC+GK
Sbjct: 412 LQHAELELFSYHIKDALESIVAISTPYYTDEMLDAMFQEFCLGK 455


>gi|157781577|gb|ABV72143.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           dispar]
          Length = 270

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/271 (34%), Positives = 158/271 (58%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG---RILDKG 64
           +ST     AISI+RLSG    ++   + +   K+       ++ Y    D    +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDDAVKIANEVYRSGSKQLADVDSHTIHYGHIFDPATEKMVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPKTFTREDVIEINCHGGIVVVNQILQLLLRQ-GARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LSSL      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLALNQLDGNLSSLIRSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     ++  I+  +   + G+I+R G    I+G  N GKSSL N L  ++ 
Sbjct: 180 EELTTRLLLEKANQVQGQINQLLLTAQQGKILREGLSTAIIGRPNVGKSSLLNHLLAEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTD+ GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDVAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|332853901|ref|XP_001161204.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like [Pan
           troglodytes]
          Length = 354

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 166/319 (52%), Gaps = 34/319 (10%)

Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209
           + GEL  L   W + LT   + +EA +DF E+++++    ++    +  L+  + +H+  
Sbjct: 42  LDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLEQADIKVRALEVALGAHLRD 101

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            + G+ +R+G  +V+ G  NAGKSSL N L++K V+IV+  PGTTRDVL   +DL G+ V
Sbjct: 102 ARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPV 161

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF------- 322
            +SDTAG+RE    VE+EG++R    +E ADLIL + + +   +++ P + +F       
Sbjct: 162 LLSDTAGLREGVGPVEQEGVRRARERLEQADLILAMLDAS---DLASPSSCNFLATVVAS 218

Query: 323 -------------IFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKIKSILS 363
                        + +  KSDL S              L+S  TGEGL+ L+  ++  L+
Sbjct: 219 VGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLDGLLEALRKELA 278

Query: 364 NKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
                     P  +  RH +HL   +  L       KD  L + AE LR+A   L ++TG
Sbjct: 279 AVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-QSKD--LALAAEALRVARGHLTRLTG 335

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               E++LDIIF  FC+GK
Sbjct: 336 GGGTEEILDIIFRDFCVGK 354


>gi|157781621|gb|ABV72165.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           italicus DSM 15952]
          Length = 270

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/272 (34%), Positives = 159/272 (58%), Gaps = 9/272 (3%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKASLRYFFGLDGR---ILDK 63
           +ST     AISI+RLSG     +   +     K+    P   ++ Y   +D +   ++D+
Sbjct: 1   ISTPPGEGAISIVRLSGDQAIAIAANVFQAGTKQLAAVPSH-TIHYGHIIDPKTEQLVDE 59

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++ V  +P++FT ED  E + HGGI VVN +L+ L +    RLA PGEF++RAF NG++
Sbjct: 60  VMVSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLRQ-GARLAEPGEFTKRAFLNGRV 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++D+ E +D
Sbjct: 119 DLSQAEAVMDLIRAKTDKAMNLALNQLDGRLSNLIRALRQEILETLAQVEVNIDYPEYDD 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V+  +S+ ++     ++  I + +   K G+I+R G    I+G  N GKSSL N L +++
Sbjct: 179 VEALTSQLLVEKAHHVQAQIQALLQTAKQGKILREGLNTTIIGRPNVGKSSLLNHLLREE 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            AIVTD+ GTTRDV+   +++ G  +K+ DTA
Sbjct: 239 KAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTA 270


>gi|325678533|ref|ZP_08158144.1| tRNA modification GTPase TrmE [Ruminococcus albus 8]
 gi|324109752|gb|EGC03957.1| tRNA modification GTPase TrmE [Ruminococcus albus 8]
          Length = 455

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 146/468 (31%), Positives = 234/468 (50%), Gaps = 49/468 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FGL---DGRI 60
           TI A+ST      IS+IR+SG +   V E I       P  A +  +   +G    +GR 
Sbjct: 3   TICAISTPVAEGGISVIRISGENALNVAEKIFAPHT-CPSVAGMAGYTCAYGQINDNGRA 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+L VF +P S+TGED  E   HGGI V   +L  L        A  GEF++RA  N
Sbjct: 62  VDDGVLTVFRAPHSYTGEDVCEISCHGGIYVTKRVLR-LCLENGAEPAQAGEFTKRAMLN 120

Query: 121 GKIDLLEAESLADLISSETE---MQRRLSMEGMSGELSSLYGQWIDKLTH----IRSFIE 173
           GK+ L +AE++ D I+++ E       L+ +G      SL+G+ IDK+T     +   + 
Sbjct: 121 GKLSLTQAEAVMDTIAAQGEYALASANLTRKG------SLFGR-IDKVTKELVKLLGELA 173

Query: 174 ADLDFSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           A +D+ EE+   V+  + +E L + + +   + +    G L   I+NG   VI G  N G
Sbjct: 174 AWVDYPEEDLPAVEENALRESLKNAVSVTGRLLADSDNGML---IKNGIDTVIAGRPNVG 230

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KS+L N L   D +IVT++ GTTRDV+     L   + ++SDTAGIR+T+D VEK G++ 
Sbjct: 231 KSTLMNLLLGYDRSIVTEVAGTTRDVIEESARLGELIFRLSDTAGIRDTEDKVEKIGVEM 290

Query: 292 TFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
               +E   L++ + + + K          K  S  K    + +  KSDL S   E++  
Sbjct: 291 AQKRLEECMLVIEVFDTSVKPDDDDTALLEKVRSLGKRA--LIVLNKSDLESAVGEDFFR 348

Query: 342 -------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
                   IS+      E++ + ++ I + +      +I +++R    L +  + L  A+
Sbjct: 349 EYCENIVCISAKDPNDREKIQHALEKIFTPENYDADSTIFANERQRGCLVKANKNL-TAA 407

Query: 395 LNEKDCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L   + G  LD +   +  A+ SL ++TG    E ++  +FSKFC+GK
Sbjct: 408 LEALEMGETLDAVTVMIDYAADSLLELTGEKATEAVVSEVFSKFCVGK 455


>gi|322379149|ref|ZP_08053545.1| tRNA modification GTPase TrmE [Helicobacter suis HS1]
 gi|321148412|gb|EFX42916.1| tRNA modification GTPase TrmE [Helicobacter suis HS1]
          Length = 455

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 224/464 (48%), Gaps = 33/464 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M     TI A++T     AI+I++LSG     +   +  +++  PR A+L   +   G +
Sbjct: 1   MTFTNSTIAAIATPPGLGAIAIVKLSGSKSLSILNALSHRQRFTPRMATLVSLYDATGDL 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L + F +P S+TGED  E   HGG+ V   ILE   K   + LA  GEF++RAF N
Sbjct: 61  LDQCLALYFKAPHSYTGEDVVELQCHGGMVVARLILEACLKQGAI-LAKGGEFTQRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            ++DL + ++LA L+ S+     +   + + G L          L  + +  E  +D++E
Sbjct: 120 NRMDLSQVQALAKLLESQNANMVKAMAKQIKGALKDFVQTTRTALLKLLASSEVLIDYAE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+   N   + +  D+  ++  +   +   +       GY + I+G  N GKSSL NAL 
Sbjct: 180 EDLPLNLLDR-MQEDLEQIEQQLLKVLEVSRARSAKLEGYTLSIIGKPNVGKSSLLNALL 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ A+V++I GTTRD +   + L G  +KI DTAGIR ++D +E+ GI ++   ++ +D
Sbjct: 239 LEERALVSEIAGTTRDTIEEVISLYGSSLKIIDTAGIRTSNDPIERLGIAKSKQRMQESD 298

Query: 301 LILLLKEINSKKEIS-------FPKNIDFIF--IGTKSD---------LYSTYTEEYDHL 342
           +IL L +++S  +            N D I   I  K+D         L +     +   
Sbjct: 299 IILALFDLSSPLDHQDQVILELLQANQDKILCVIFNKNDCPTKLDTTALLAVLPPLFAPA 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT------VRYLEMASLN 396
           +S  T E    L+ K         K L    P+    L  L+Q       ++ L+ A   
Sbjct: 359 MSLNTKEPCLPLLKK-------ALKPLFEHNPNDSLILATLTQQNSLELGIKSLQSAKKP 411

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   L++ + +++ A  S+  I+     +++LD +F +FC+GK
Sbjct: 412 LQHAELELFSYHIKDALESIVAISTPYYTDEMLDAMFQEFCLGK 455


>gi|302341712|ref|YP_003806241.1| tRNA modification GTPase TrmE [Desulfarculus baarsii DSM 2075]
 gi|301638325|gb|ADK83647.1| tRNA modification GTPase TrmE [Desulfarculus baarsii DSM 2075]
          Length = 460

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 217/436 (49%), Gaps = 22/436 (5%)

Query: 24  RLSGPSCFQVCEFI--CKKKKPF-PRKASLRYFF-GLDGRILDKGLLIVFPSPESFTGED 79
           RLSGP  + V   +     ++P  PR+  L        G  +D+ L + F  P S+T ED
Sbjct: 28  RLSGPRSWAVGRALLPWTARRPIIPRRMELGLVVDPASGEAVDQALAVFFRGPHSYTTED 87

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
           S E H HGG A V  ++  LA+    RLA PGEF+ RA   G++DL +AE++  L ++++
Sbjct: 88  SVEIHCHGGSACVWRVIG-LAQAQGCRLAGPGEFTMRAMLGGRLDLTQAEAVGRLAAAQS 146

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE-EDVQNFSSKEVLNDILF 198
           +++ RL+M  ++G L    G     +    + +EA +DF ++  ++   +    L D   
Sbjct: 147 DIEARLAMAMLAGGLGRALGPARQAIVAAAASVEAAIDFPDDAPELAGPAQATALEDGAA 206

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
                    + G+       G K+ I G  N GKSSLFNAL  +  AIV++ PG TRDV+
Sbjct: 207 RPLAALLAGTVGR--AAYWEGAKVAICGRPNVGKSSLFNALLGRQRAIVSERPGATRDVV 264

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL----KEINSKKE- 313
              L L G   +++DTAG+    D +++ G +R    + + DL L+L    + + S    
Sbjct: 265 DEVLILGGVACRLADTAGLGPAADELDRLGQERATSFLADCDLALVLLDGSRPLTSADHA 324

Query: 314 -ISFPKNIDFIFIGTKSDLYSTYTEEYDHL-----ISSFTGEGLEELINKI-KSILSNKF 366
            ++  ++   + +  K+DL   +      L     IS+ +G GL EL   + +++     
Sbjct: 325 VLALCQDRPRLLVVNKADLPPAWQPSALGLGPTLAISATSGLGLNELARAVAEALCQGAA 384

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +  P  +  + R    L + + ++   +A L   +   ++I+ +L  A  +LG++ G   
Sbjct: 385 EPAPGEVVVNARQRAALGRGLAFVRRAVAELGRPEPRPELISLDLAGALAALGEVDGQGA 444

Query: 425 VEQLLDIIFSKFCIGK 440
            +++++ +FS FC+GK
Sbjct: 445 PDEVIEAVFSTFCVGK 460


>gi|157781555|gb|ABV72132.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           raffinosus]
          Length = 270

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 154/263 (58%), Gaps = 7/263 (2%)

Query: 19  AISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LDGRILDKGLLIVFPSP 72
           AISI+RLSG    ++ + +    KK      S    +G      + +++D+ ++ V  +P
Sbjct: 9   AISIVRLSGDRAVEIADSVYNSGKKCLLDVPSHTIHYGHIIDPANQQVVDEVMVTVMRAP 68

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
           ++FT ED  E + HGGI VVN +L+ + +    RLA PGEF++RAF NG++DL +AE++ 
Sbjct: 69  KTFTREDIVEINCHGGIVVVNQLLQLILR-SGARLAEPGEFTKRAFLNGRVDLSQAEAVM 127

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI ++T+    +++  + G LS L  Q   ++    + +E ++D+ E +DV+  +++ +
Sbjct: 128 DLIRAKTDRAMNVAINQLDGNLSHLIRQLRQEILETLAQVEVNIDYPEYDDVEELTTQLL 187

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           L     +   I + +   K G+I+R G    I+G  N GKSSL N L  ++ AIVT+I G
Sbjct: 188 LEKAQQVGQQIDALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEKAIVTEIAG 247

Query: 253 TTRDVLTIDLDLEGYLVKISDTA 275
           TTRDV+   +++ G  +K+ DTA
Sbjct: 248 TTRDVIEEYVNVRGVPLKLIDTA 270


>gi|163848366|ref|YP_001636410.1| tRNA modification GTPase TrmE [Chloroflexus aurantiacus J-10-fl]
 gi|222526288|ref|YP_002570759.1| tRNA modification GTPase TrmE [Chloroflexus sp. Y-400-fl]
 gi|205829131|sp|A9WKE3|MNME_CHLAA RecName: Full=tRNA modification GTPase mnmE
 gi|163669655|gb|ABY36021.1| tRNA modification GTPase TrmE [Chloroflexus aurantiacus J-10-fl]
 gi|222450167|gb|ACM54433.1| tRNA modification GTPase TrmE [Chloroflexus sp. Y-400-fl]
          Length = 452

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 107/290 (36%), Positives = 153/290 (52%), Gaps = 8/290 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRY--FFGLDGRIL 61
            +TI A++T      I IIRLSGP    +   I +  +P   R   +RY    G DG ++
Sbjct: 2   NDTIAAIATPPGEGGIGIIRLSGPDAQSIALRIFRPVRPGRLRSHRVRYGHVIGPDGEVI 61

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ LL +  +P SFT ED  E   HGG   V   LE        RLANPGEF+ RAF NG
Sbjct: 62  DEALLTLMAAPHSFTREDVVEISCHGGALPVQLTLEAALAA-GARLANPGEFTLRAFLNG 120

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE+  D+I ++T     ++   + G L+         +    ++I A +DF EE
Sbjct: 121 RIDLSQAEATLDVIRAQTSAGLAIAQAQLGGWLAREVRAARTAILEPLAYITALIDFPEE 180

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
                   + V   I      +   ++    G ++RNG ++V++G  N GKSSL NAL +
Sbjct: 181 ----GIEPQTVAGPIEQALATVERLLAGADQGMVLRNGARVVLVGRPNVGKSSLLNALLR 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
            + AIVT IPGTTRD L    +L G  V + DTAG+R + D VE+ G++R
Sbjct: 237 VERAIVTPIPGTTRDTLEEMANLAGVPVVLIDTAGMRTSTDPVEQIGVER 286



 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 29/38 (76%)

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++A +L  A+ +LG+ITG    E LLD+IFS+FCIGK
Sbjct: 415 DLLAADLTGAANALGEITGETVGEDLLDMIFSRFCIGK 452


>gi|269469285|gb|EEZ80798.1| GTPase [uncultured SUP05 cluster bacterium]
          Length = 325

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 178/327 (54%), Gaps = 13/327 (3%)

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           +++AE++AD+I + +E   R ++  +SG  S         +  +R F+EA +DFS+EE +
Sbjct: 1   MVQAEAVADIIEANSEQASRSALRSLSGVFSKQVNTLTRAIIELRIFVEATIDFSDEE-I 59

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S++V      +++++   +     G I+R G  + I G  NAGKSSL NAL ++  
Sbjct: 60  DFLQSEQVKERAQHIQDEVQEILHSATQGAILREGLNVAIAGKPNAGKSSLLNALTQRSS 119

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+ E+ D+VEKEGIKR    +  AD++L+
Sbjct: 120 AIVTDIAGTTRDVLRETIHIDGMPLNIIDTAGLHESQDVVEKEGIKRAIDVIAQADVVLM 179

Query: 305 LKEINSKK-EIS-FPKNID---FIFIGTKSDLYSTY----TEEYDHLISSFTGE--GLEE 353
           + +   +  + S  P+ +D    + I  K DL +       E+    +S    E  G++ 
Sbjct: 180 MYDAQDQSPDFSLLPEKLDLKKLLVIKNKIDLTNERPGRCIEQGKTQLSICAKEIQGVDL 239

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  ++   ++         + + KRH+  L +++  +  A L  +   ++++AE+LR A 
Sbjct: 240 LRQELAD-MAGLDSGAEGVVLARKRHIIALEESLEAINNALLQLEGGAIELMAEDLRHAG 298

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++G ITG    + LL  IFS FCIGK
Sbjct: 299 QAMGSITGEFSSDDLLGEIFSSFCIGK 325


>gi|157781611|gb|ABV72160.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           asini]
          Length = 270

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 155/272 (56%), Gaps = 9/272 (3%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDGR---ILDK 63
           +ST     AISI+RLSG     + + I     K+    P   ++ Y   +D +    LD+
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVAIADGIYHMGQKRLTQVPSH-TIHYGHIVDPKNEKTLDE 59

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++ V  +P++FT ED  E + HGG+ V N IL+ L      RLA PGEF++RAF NG++
Sbjct: 60  VMVTVLRAPKTFTREDIVEINCHGGMVVTNQILQ-LVLRCGARLAEPGEFTKRAFLNGRM 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ DLI ++T+    L++  + G LS L      ++ +  + +E ++D+ E +D
Sbjct: 119 DLSQAEAVMDLIRAKTDKAMDLALTQLDGNLSHLIRNLRQEILNTLAQVEVNIDYPEYDD 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V+  ++K +L     ++  I   +   + G+I+R G    I+G  N GKSSL N L  ++
Sbjct: 179 VEELTTKLLLEKAQEVQGQIDGLLQTAQQGKILREGLSTAIIGRPNVGKSSLLNYLLDEE 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            AIVT+I GTTRDV+   +++ G  +K+ DTA
Sbjct: 239 KAIVTEIAGTTRDVIEEYVNVRGVPLKLVDTA 270


>gi|255660441|ref|ZP_05405850.1| tRNA modification GTPase TrmE [Mycoplasma genitalium G37]
          Length = 388

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 123/395 (31%), Positives = 212/395 (53%), Gaps = 20/395 (5%)

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           + + +D  LL  F SP S+TGED  E   HG + +VN I   L K   +  A PGEF++R
Sbjct: 3   NNKRIDDVLLFKFVSPNSYTGEDLIEISCHGNMLIVNEICALLLKKGGV-YAKPGEFTQR 61

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           +F NGK+ L +A ++  LI S   + + + +  ++GE+     Q   ++  +   +E ++
Sbjct: 62  SFLNGKMSLQQASAVNKLILSPNLLVKDIVLNNLAGEMDQQLEQIAQQVNQLVMQMEVNI 121

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  D Q      + N +  +   +   I   K  + + + +KI I+G +N GKSSL 
Sbjct: 122 DYPEYLDEQ-VELSTLNNKVKLIIEKLKRIIENSKQLKKLHDPFKIAIIGETNVGKSSLL 180

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  +D AIV++I G+TRDV+  D +L GYL+KI DTAGIR+    +EK GIK++F  +
Sbjct: 181 NALLNQDKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKHKSGLEKAGIKKSFESI 240

Query: 297 ENADLIL-LLKEINSKKEISF-----PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
           + A+L++ LL   + KK++           DF     K DL    T ++++ IS+   + 
Sbjct: 241 KQANLVIYLLDATHPKKDLELISFFKKNKKDFFVFYNKKDL---ITNKFENSISA-KQKD 296

Query: 351 LEELINKIKSILSNKFKKLP---FSIPSHKRHLYH--LSQTVRYLEMASLNEKDCGLDII 405
           ++EL++ +   ++  +KK+    + I + ++ L      Q  ++L+     +K    D++
Sbjct: 297 IKELVDLLTKYINEFYKKIDQKIYLIENWQQILIEKIKEQLEQFLKQQ---KKYLFFDVL 353

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +LR A   + K+ G      L++ IF+ FC+GK
Sbjct: 354 VTHLREAQQDILKLLGKDVGFDLVNEIFNNFCLGK 388


>gi|119952977|ref|YP_945186.1| tRNA modification GTPase TrmE [Borrelia turicatae 91E135]
 gi|254811472|sp|A1QYX4|MNME_BORT9 RecName: Full=tRNA modification GTPase mnmE
 gi|119861748|gb|AAX17516.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Borrelia turicatae 91E135]
          Length = 464

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 143/466 (30%), Positives = 235/466 (50%), Gaps = 35/466 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGRI 60
             ++ I A++T  L SA+ +IR SG S  +    +    K     +  ++ Y + +D  I
Sbjct: 6   QREDDIVALATPLLSSALCVIRSSGISSIEKFSKMFSDPKRLLEASGHTIHYGYLIDKEI 65

Query: 61  ---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              LD+ ++ ++ +P+SFTG++S E   HG    +  I+    K+   R+A PGEF+ RA
Sbjct: 66  CEKLDEVVVCIYRAPKSFTGQNSIEVMAHGSPIGIKRIIGCFLKV-GFRMAEPGEFTLRA 124

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F  GK+DL +AE++ +LIS++T     L++  +SG L +        + +  S +   LD
Sbjct: 125 FLAGKLDLTKAEAVNELISAKTNKTHSLAVNKLSGSLFAKIDLIKKDILNFLSALSVHLD 184

Query: 178 F--SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +  SE E    F       D L  K  + S+ +  KL      G  +V+ G  N GKSSL
Sbjct: 185 YETSEYEVAIPFEIISKSRDEL--KRLVDSYNTARKLDY----GIALVLAGSVNVGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
           FN L K+D AIV+   GTTRD +    + +G L  + DTAG+RET D VE+ GI ++   
Sbjct: 239 FNLLLKEDRAIVSSYAGTTRDYIQASFEFDGILFNVFDTAGLRETTDFVEQLGIVKSNSL 298

Query: 296 VENADLILLLKEINSKKEISFPKNID-------FIFIGTKSDL---------YSTYTEEY 339
           ++ A L+L + +++++      K ID        IF+  K DL         +++     
Sbjct: 299 IKEASLVLYVIDLSARLTNDDLKFIDSYKGHSKVIFVLNKMDLEPNRQTVEFFNSGNINS 358

Query: 340 DHL--ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMAS 394
            +L  IS+ T  G++ L +KI+S+    +  +     I S  R    L +     +E+ +
Sbjct: 359 SNLVKISTKTLFGIDSLYDKIRSLTCFDYIDIDAYDVIVSSSRQAELLKKAYTLIIELLN 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             EKD   D++A ++      LG+ITG V  E +L+ +F  FC+GK
Sbjct: 419 KIEKDISYDMLAFDVYEVLNFLGEITGEVTSEDVLNNMFKNFCLGK 464


>gi|253582574|ref|ZP_04859795.1| thiophene/furan oxidation protein ThdF [Fusobacterium varium ATCC
           27725]
 gi|251835444|gb|EES63984.1| thiophene/furan oxidation protein ThdF [Fusobacterium varium ATCC
           27725]
          Length = 293

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 166/291 (57%), Gaps = 7/291 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP--RKASLRYFFGLDG-RI 60
           +TI A+ST      I I+R+SG    ++    F  K KK     +  S+ Y    DG  +
Sbjct: 4   DTIAAISTPRGEGGIGIVRISGNHALEILGKIFRPKSKKVIGDLKNFSINYGHLYDGENL 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P ++T ED  E + HGG  +   +LE + K    RL+  GEF+RRAF N
Sbjct: 64  IDEVLVSVMKAPNTYTKEDMVEINCHGGFVITEKVLETVLK-NGARLSESGEFTRRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ D+I  +TE    LS+E + G+L          +  + + I   LD+ E
Sbjct: 123 GRLDLTQAEAVMDIIHGKTEKSVSLSLEQLRGDLKEQIEHLKKLVLDVAAHINVVLDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  + +   + +++++  + +   + I     G++I+ G K  I+G  N GKSS+ N++ 
Sbjct: 183 E-GIDDPLPENLVDNLKEVMDTTDALIKSYDKGKMIKEGIKTAIVGKPNVGKSSILNSVL 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           K++ AIVT + GTTRDV+   ++L+G  + + DTAGIR+TDD+VE  G+++
Sbjct: 242 KEERAIVTHVAGTTRDVIEEVVNLKGIPLVLVDTAGIRKTDDLVENIGVEK 292


>gi|295103710|emb|CBL01254.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii SL3/3]
          Length = 456

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 132/460 (28%), Positives = 223/460 (48%), Gaps = 28/460 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           +  TI A++T      I+++RLSG   + V   +     P  +    + +  L G  +D+
Sbjct: 2   QGSTIAAIATPPGAGGIAVVRLSGAESYAVAARVFHPANPAKKVEQAKGYTALFGHFVDR 61

Query: 64  ------GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
                 G+ + F +P S+TGED  E   HGG AV   ++E          A  GE++RRA
Sbjct: 62  EEAFDEGVALFFRAPHSYTGEDVVELSCHGGSAVARRLVEACLAAGAQPAAP-GEYTRRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+ L +AE++ DLI+++      L+   + G L+        +LT +++ + A +D
Sbjct: 121 FLNGKLGLTQAEAVMDLIAADGRRGAALANAALGGALAKKINAQKAQLTALQAHLAAWVD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EE DV       +   +  ++ ++   I     G ++R G    I+G  NAGKS+L N
Sbjct: 181 FPEE-DVPELDPAHLRTVLGAVREELDGLIRSYDAGAVLREGVDCAIVGRPNAGKSTLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            LA  D AIVT + GTTRDV+   + L    + + DTAG+RET+D +E EGI+R++ ++E
Sbjct: 240 LLAGFDRAIVTPVAGTTRDVVEQAVQLGDIRLNLFDTAGLRETEDAIEAEGIRRSWKKLE 299

Query: 298 NADLILLL---KEINSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            A LIL +    E  S+++++  +       I +  K D  + +  E   LI+ +    L
Sbjct: 300 EAGLILAVFDGSEPPSREDLALAQRCAGRPAIALVNKEDKPTQFDAE---LIAPYFAMVL 356

Query: 352 EELINK--IKSILSNKFKKL--PFSIPSHKRHL---YHLSQTVRYLE----MASLNEKDC 400
                +   + +++    +L    SI  H   L     LS  +R  +             
Sbjct: 357 PVCCREEGSRKVIAAAVARLLGTGSIDPHAASLSGQRQLSAALRARDAVAGALDAAAGGF 416

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           GLD ++  +  A  +L  +TG    E +++ +F +FC+GK
Sbjct: 417 GLDAVSVCVDDALDALCDLTGENASEAVIEQVFERFCVGK 456


>gi|157781549|gb|ABV72129.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           avium]
 gi|157781551|gb|ABV72130.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           avium]
          Length = 270

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 155/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     + + +    KK      S    +G      +  I+D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDHAVAIADSVYHSGKKSLLDVPSHTIHYGHIIDPEEQEIVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +L+ + +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPKTFTREDIVEINCHGGIVVVNQLLQLILR-SGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    +++  + G LS L  +   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDRAMSVAINQLDGNLSHLIRRLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +   I + +   K G+I+R G    I+G  N GKSSL N L  ++ 
Sbjct: 180 EELTTQLLLEKAQQVGQQIDALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVT+I GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|160944275|ref|ZP_02091504.1| hypothetical protein FAEPRAM212_01784 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444457|gb|EDP21461.1| hypothetical protein FAEPRAM212_01784 [Faecalibacterium prausnitzii
           M21/2]
          Length = 456

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 130/444 (29%), Positives = 218/444 (49%), Gaps = 28/444 (6%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK------GLLIVFPSPE 73
           I+++RLSG   +QV   +     P  +    + +  L G  +D+      G+ + F +P 
Sbjct: 18  IAVVRLSGAESYQVAARVFHPANPAKKVEEAKGYTALFGHFVDREEAFDEGVALFFRAPH 77

Query: 74  SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133
           S+TGED  E   HGG AV   ++E          A  GE++RRAF NGK+ L +AE++ D
Sbjct: 78  SYTGEDVVELSCHGGNAVARRLVEACLAAGAQPAAP-GEYTRRAFLNGKLGLTQAEAVMD 136

Query: 134 LISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           LIS++      L+   + G L+        +LT +++ + A +DF EE DV       + 
Sbjct: 137 LISADGRQGAALANAALGGALAKKINAQKAQLTALQAHLAAWVDFPEE-DVPELDPAHLR 195

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             +  ++ ++ + I     G ++R G    I+G  NAGKS+L N LA  D AIVT + GT
Sbjct: 196 TVLGAVREELDALIRGYDAGAVLREGVDCAIVGRPNAGKSTLLNLLAGFDRAIVTPVAGT 255

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL---KEINS 310
           TRDV+   + L    + + DTAG+RET+D +E EGI+R++ ++E A LIL +    E  S
Sbjct: 256 TRDVVEQAVQLGDIRLNLFDTAGLRETEDAIEAEGIRRSWKKLEEAGLILAVFDGSEPPS 315

Query: 311 KKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK--IKSILSNK 365
           +++++  +       I +  K D  + +  E   LI+ +    L     +   + +++  
Sbjct: 316 REDLALAQRCAGRPAIALVNKEDKPTRFDAE---LIAPYFAMVLPVCCREEGSRKVIAAA 372

Query: 366 FKKL--PFSIPSHKRHL---YHLSQTVRYLE----MASLNEKDCGLDIIAENLRLASVSL 416
             +L    SI  H   L     LS  +R  +             GLD ++  +  A  +L
Sbjct: 373 VARLLGTGSIDPHAASLSGQRQLSAALRARDAVAGALDAAAGGFGLDAVSVCVDDALDAL 432

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
             +TG    E +++ +F +FC+GK
Sbjct: 433 CDLTGENASEAVIEQVFERFCVGK 456


>gi|148668862|gb|EDL01030.1| GTP binding protein 3, isoform CRA_b [Mus musculus]
          Length = 236

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 80/162 (49%), Positives = 104/162 (64%), Gaps = 2/162 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64
           TIFA+S+G    AI++IR SGP+       +   ++P P R+A LR       G  LD+ 
Sbjct: 30  TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALQEPPPARRACLRLLRHPCSGEPLDRS 89

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 90  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 149

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166
           L E E LADLI +ETE QRR ++  + GELS L   W   LT
Sbjct: 150 LTEVEGLADLIRAETEAQRRQALRQLDGELSQLCQGWAKTLT 191


>gi|62024520|gb|AAH92042.1| Gtpbp3 protein [Mus musculus]
          Length = 241

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 80/162 (49%), Positives = 104/162 (64%), Gaps = 2/162 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64
           TIFA+S+G    AI++IR SGP+       +   ++P P R+A LR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALQEPPPARRACLRLLRHPCSGEPLDRS 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166
           L E E LADLI +ETE QRR ++  + GELS L   W   LT
Sbjct: 155 LTEVEGLADLIRAETEAQRRQALRQLDGELSQLCQGWAKTLT 196


>gi|313621862|gb|EFR92546.1| tRNA modification GTPase MnmE [Listeria innocua FSL J1-023]
          Length = 340

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 184/344 (53%), Gaps = 25/344 (7%)

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D
Sbjct: 1   FLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNID 60

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N
Sbjct: 61  YPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLN 120

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + 
Sbjct: 121 QLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALA 180

Query: 298 NADLILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEYDHL------- 342
           +AD ILL+  +N  +E++             +++ +  K+DL +    + D +       
Sbjct: 181 DADFILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKL--DIDRVRELAGEN 236

Query: 343 ----ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
                S    EGLE L   IK++  +        +  S+ RH+  L Q +  L   +   
Sbjct: 237 PIVATSLVNDEGLEALEEAIKALFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGI 296

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +    +DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 297 QLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 340


>gi|320102561|ref|YP_004178152.1| GTP-binding protein TrmE [Isosphaera pallida ATCC 43644]
 gi|319749843|gb|ADV61603.1| GTP-binding protein TrmE [Isosphaera pallida ATCC 43644]
          Length = 526

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 145/521 (27%), Positives = 239/521 (45%), Gaps = 89/521 (17%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVC--EFICKKKKPFPRKAS----------LRY 52
           ++TI A+S+   P+A  I+R+SGP  + V    F  +     P  A+            +
Sbjct: 10  EDTIAAISSPHGPAARGILRISGPRAWSVALARFTPRAHVGDPVGATSTVSWTPGVHAGW 69

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK----------M 102
           F  L+        L +  +P +FTG+D AE+H+ G   ++N  LE +             
Sbjct: 70  FHALEIATPIPAELTLGRAPRTFTGQDLAEWHLPGSEPLLNAALETILTENVDVSSELVA 129

Query: 103 PNL-------------------RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143
           PNL                   R A PGEF+ RA+  GK+DL++AE++ +++ + T  + 
Sbjct: 130 PNLGEFSNPEATQAFSTRRGRVRSARPGEFTLRAYLAGKLDLIQAEAVWEVVHATTPQRL 189

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
           R +++ ++G L S   +    L  + + IEA+LDF +E DV      +++  +   +  +
Sbjct: 190 RAALDRLAGGLGSPLLETRSDLLDVLAIIEANLDFVDEADVDPVELAQLVAVLDHQRERL 249

Query: 204 SSHISQGKLGEIIRNGY--KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
              + +G+  E  R+G   ++VI+G  NAGKS LFNAL   D A+V+ + GTTRD L   
Sbjct: 250 RQLLERGRARE--RDGRVPRVVIVGAPNAGKSCLFNALLGSDRALVSPVVGTTRDYLAEP 307

Query: 262 LDL---------EGYLVKISDTAG------IRETDDIVEKE--------------GIKRT 292
           L L         E ++V++ DTAG      + +TD     E                +R+
Sbjct: 308 LQLPADESDPASEPFVVELIDTAGDERLETLWDTDPPPHSEPRPAPLESIRHQADAARRS 367

Query: 293 FLEVENADLILLLKEINSKKE---ISFPKNI--DFIFIGTKSDLYSTY-TEEYDH----- 341
            LE   ADL+L     ++      I++      D + +GTK DL   +   E+ H     
Sbjct: 368 QLEA--ADLVLRCWAHDAPPTPELIAWRPGPGQDLLEVGTKGDLDQRHCASEHRHHQVLD 425

Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
            + S+ TGEGL+EL   I   L+++ +          R    L   +  L+ A+    + 
Sbjct: 426 VITSTATGEGLKELRRLIVRRLADRIQDEDEEAALPARVTEGLRNALAALDRAAWAVAQG 485

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L++ A +L  A   LG + G    + +LD IF +FCIGK
Sbjct: 486 RDLELAAVDLAQAINDLGAVVGIEVEDDILDRIFQRFCIGK 526


>gi|313112541|ref|ZP_07798206.1| tRNA modification GTPase TrmE [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310625141|gb|EFQ08431.1| tRNA modification GTPase TrmE [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 475

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 131/460 (28%), Positives = 222/460 (48%), Gaps = 28/460 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG----- 58
           ++ TI A++T      I+++RLSG   + +   + +      +  + + +  + G     
Sbjct: 21  QETTIAAIATAPGAGGIAVVRLSGAESYPIAARVFRPANAAKKVENAKGYTAMYGTFREG 80

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
               D+G+ + F +P S+TGED  E   HGG AV   ++E          A  GE++RRA
Sbjct: 81  DEAFDEGVALFFRAPHSYTGEDVVELSCHGGSAVARRLVEACLAAGAQPAAP-GEYTRRA 139

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+ L +AE++ DLIS++      L+   + G L+       + LT I++ + A +D
Sbjct: 140 FLNGKLGLTQAEAVMDLISADGRQGAALANAALGGALAKKISAQKEALTAIQAHLAAWVD 199

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EE DV       +   +  +K ++   I   +   ++R G    I+G  NAGKS+L N
Sbjct: 200 FPEE-DVPELDGDHLHRVLSGVKAELDELIHNYQADTVLREGVDCAIVGRPNAGKSTLLN 258

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            LA  D AIVT + GTTRDV+   + L    + + DTAG+RET+D +E EGI+R++ ++E
Sbjct: 259 LLAGFDRAIVTPVAGTTRDVVEQAVQLGDIQLNLFDTAGLRETEDAIEAEGIRRSWKKLE 318

Query: 298 NADLILLL---KEINSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            A LIL +    E  +++++   +       I +  K D  + +  E   LI+      L
Sbjct: 319 EAGLILAVFDGSEPPTREDLELAQRCTGRPAIALINKEDKPTQFDAE---LIAPCFAMVL 375

Query: 352 EELINKIKS--ILSNKFKKL--PFSIPSHKRHL---YHLSQTVRYLE----MASLNEKDC 400
                + +S  ++S    +L     I  H   L     LS  +R  +             
Sbjct: 376 PVCCQEEESRKVISAAVARLLGTSQIDPHAASLSGQRQLSAALRARDAVAGALDAAAGGF 435

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           GLD ++  +  A  +L  +TG    E +++ +F +FC+GK
Sbjct: 436 GLDAVSVCVDDALAALCDLTGENASEAVIEQVFERFCVGK 475


>gi|149036123|gb|EDL90789.1| rCG38694, isoform CRA_b [Rattus norvegicus]
          Length = 208

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 102/162 (62%), Gaps = 2/162 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64
           TIFA+S+G    AI++IR SGP+       +   ++P P R A LR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALREPPPARSACLRLLRHPCSGEPLDRS 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  E HVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCMELHVHGGPAVVSGVLQALGSVPGLRPAKAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166
           L E E LADLI +ETE QRR ++  + GELS L   W   LT
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELSQLCQGWAKTLT 196


>gi|261368861|ref|ZP_05981744.1| tRNA modification GTPase TrmE [Subdoligranulum variabile DSM 15176]
 gi|282569034|gb|EFB74569.1| tRNA modification GTPase TrmE [Subdoligranulum variabile DSM 15176]
          Length = 389

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 167/312 (53%), Gaps = 11/312 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF------F 54
           M+  ++TI A++T      I++IR+SGP  + + E +    +   R A  + +      +
Sbjct: 1   MDRLEQTICALATPPGEGGIAVIRVSGPDAYPIVEKVFVPVRQGRRVAQAKGYTAMLGHY 60

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            L G  +D+ + + + +P S+TGED  E  VHGG A+  G+LE L            EF+
Sbjct: 61  TLRGEEMDETVALFYRAPHSYTGEDVIELSVHGGTAMAEGLLEALLLAGAAPAGPG-EFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRA E+GK+ L +AE++ ++I++       L+   + G L+   G     L  + + + A
Sbjct: 120 RRALEHGKLSLTQAEAVMEVIAANGRQGAALAKSALDGRLAKRIGSIQAALQSLNAHLTA 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +D+ EE DV   S   +   +L  K ++   I+    G ++R+G   V+LG  N GKS+
Sbjct: 180 WVDYPEE-DVPELSDAALTGTLLTQKAELDDLIAGYGAGAVLRHGVDCVLLGRPNVGKST 238

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKR 291
           L N LA  D AIVT + GTTRD++   + L    + + DTAG+RE     D +E EGI+R
Sbjct: 239 LLNLLAGFDRAIVTPVAGTTRDIVEQAVQLGEIRLNLFDTAGVREVGADGDAIEAEGIRR 298

Query: 292 TFLEVENADLIL 303
           ++ +++ A L+L
Sbjct: 299 SWKKLDEAGLVL 310


>gi|207342423|gb|EDZ70194.1| YMR023Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 290

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/256 (37%), Positives = 144/256 (56%), Gaps = 24/256 (9%)

Query: 4   EKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGR-- 59
           ++ TI+A+ST A   SAI+IIR+SG    +     +     P  RKA LR  +       
Sbjct: 35  QQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSCSV 94

Query: 60  ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103
                     +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  +       
Sbjct: 95  KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
           ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W +
Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214

Query: 164 KLTHIRSFIEADLDFSEE--EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNG 219
            +    + + A +DF+++  +++QN       V  +I+ L++ I + + + +   I++NG
Sbjct: 215 TIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTILQNG 274

Query: 220 YKIVILGHSNAGKSSL 235
            K+V+LG  N GKSSL
Sbjct: 275 IKLVLLGAPNVGKSSL 290


>gi|32477206|ref|NP_870200.1| tRNA modification GTPase TrmE [Rhodopirellula baltica SH 1]
 gi|81659201|sp|Q7UJI3|MNME_RHOBA RecName: Full=tRNA modification GTPase mnmE
 gi|32447757|emb|CAD77275.1| probable tRNA modification GTPase trmE [Rhodopirellula baltica SH
           1]
          Length = 465

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 132/478 (27%), Positives = 226/478 (47%), Gaps = 62/478 (12%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK----------KPFPRKASLRYFFG 55
           +TI A+++   P+   I+RLSG  C  V   +C+ K          +PF    +L     
Sbjct: 7   DTIAAIASPMTPAPRGIVRLSGHDCIDV---LCRMKVLDTDEASGRRPFRSSKTLSLGEP 63

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L    +D   ++V+P+  S+TG+ SAE H+ G   ++   L+   +    R A PGEF+ 
Sbjct: 64  LGAIEVD---VMVWPTQRSYTGQPSAELHLIGSAPLLQSSLDAAIRA-GARAARPGEFTM 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           R+F  G++DL +AE++  +I +E       ++  ++G LS         L  + + +EA 
Sbjct: 120 RSFLAGRLDLTQAEAVLGVIEAEDRGTLDQALSQLAGNLSRPLQAARSTLLDLLADVEAG 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAG 231
           LDF +E D++  S + ++  +  L++ +    SQ    G     IR    +V+ G  NAG
Sbjct: 180 LDFVDE-DIEFISDEALIQRLDELRSLLLQTRSQLSDRGGASSTIR----VVLRGLPNAG 234

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG--IRETDD------- 282
           KS L N L++ + AIVTD  GTTRD++T++    G+  ++ DTAG   RE  D       
Sbjct: 235 KSRLLNVLSRTESAIVTDQAGTTRDLVTVESSWGGHSFQLIDTAGSESREESDPEAPISQ 294

Query: 283 --------IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334
                         +    ++    D    LK  N+       ++   I + TK DL  T
Sbjct: 295 EAQLQAAEAARGADVHVWCIDATGGDGFESLKSPNAVL-AEAKRSAQLICVATKRDLMPT 353

Query: 335 ----YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI--------PSHKRHLYH 382
                +   D  +SS +G G++ LI ++      +      S+         S    + H
Sbjct: 354 DWNGESMRADLAVSSESGTGVDSLIERLVQFAEQRDAGETGSVIGTAARCQDSLAAAIEH 413

Query: 383 LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L+Q +++ E A+      G +++A  +RLA  ++G++TG V  + +LD +F +FCIGK
Sbjct: 414 LAQAIQWTEQAA------GHELVAAEMRLAVEAIGEVTGQVYTDDILDRVFGRFCIGK 465


>gi|327540499|gb|EGF27081.1| tRNA modification GTPase TrmE [Rhodopirellula baltica WH47]
          Length = 465

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 132/478 (27%), Positives = 227/478 (47%), Gaps = 62/478 (12%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK----------KPFPRKASLRYFFG 55
           +TI A+++   P+   I+RLSG  C  V   +C+ K          +PF    +L     
Sbjct: 7   DTIAAIASPMTPAPRGIVRLSGHDCIDV---LCRMKLLDTDEASGRRPFRSSKTLSLREP 63

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L    +D   ++V+P+  S+TG+ SAE H+ G   ++   L+   +    R A PGEF+ 
Sbjct: 64  LGAIEVD---VMVWPTQRSYTGQPSAELHLIGSAPLLQSSLDAAIRA-GARAARPGEFTM 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           R+F  G++DL +AE++  +I +E       ++  ++G LS         L  + + +EA 
Sbjct: 120 RSFLAGRLDLTQAEAVLGVIEAEDRGTLDQALSQLAGNLSRPLQAARSTLLDLLADVEAG 179

Query: 176 LDFSEEEDVQNFSSKEV---LNDILFLKNDISSHIS-QGKLGEIIRNGYKIVILGHSNAG 231
           LDF +E D++  S + +   L+++  L     S +S +G     IR    +V+ G  NAG
Sbjct: 180 LDFVDE-DIEFISDEALIQRLDELRTLLLQTRSQLSDRGGASSTIR----VVLRGLPNAG 234

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RETDD------- 282
           KS L N L++ + AIV D  GTTRD++T++    G+  ++ DTAG+  RE  D       
Sbjct: 235 KSRLLNVLSRTESAIVNDQAGTTRDLVTVESSWGGHSFQLIDTAGLESREESDPEAPISQ 294

Query: 283 --------IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334
                         +    ++    D    LK  N+       ++   I + TK DL  T
Sbjct: 295 EAQLQAAEAARGADVHVWCIDATGGDGFESLKSPNAVL-AEAKRSAQLICVATKRDLMPT 353

Query: 335 ----YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI--------PSHKRHLYH 382
                +   D  +SS +G G++ LI ++      +      S+         S    + H
Sbjct: 354 DWNGESMRADLAVSSESGAGIDSLIEQLVQFAEQRDAGETGSVIGTAARCQDSLAAAIEH 413

Query: 383 LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L+Q +++ E A+      G +++A  +RLA  ++G++TG V  + +LD +F +FCIGK
Sbjct: 414 LAQAIQWTEQAA------GHELVAAEMRLAVEAIGEVTGQVYTDDILDRVFGRFCIGK 465


>gi|147772302|emb|CAN64562.1| hypothetical protein VITISV_038233 [Vitis vinifera]
          Length = 434

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 189/359 (52%), Gaps = 36/359 (10%)

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           GEF+ RAF NG++DL +AE++  LIS+++      ++ G+ G  SSL      +   + +
Sbjct: 55  GEFTLRAFLNGRLDLSQAENVGKLISAKSIAAADAALAGIQGGFSSLVRSLRIQCIELLT 114

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV-ILGHSN 229
            IEA LDF +E  +       +++ I  +  D+ + +      +++++G +++ I+G  N
Sbjct: 115 EIEARLDFDDE--MPPLDLNLIMDKIHXMSQDVENALETANYDQLLQSGLQVIAIIGRPN 172

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKSSL NA +K + AIVT+I GTTRDV+   + + G  V + DTAGIRETDDIVEK G+
Sbjct: 173 VGKSSLLNAWSKSERAIVTEIAGTTRDVVEASVSIHGIPVTLLDTAGIRETDDIVEKIGV 232

Query: 290 KRTFLEVENADLILLL----------------KEINSKK--EISFPKNIDFIFIGTKSDL 331
           +R+     +AD+I++                 + I++KK  E S P     I +  K D 
Sbjct: 233 ERSEAVAISADVIIMTISALDGWTSQDTKLFNRIISNKKFVESSTP----VILVVNKIDC 288

Query: 332 YSTYTEEYDHLISSF---------TGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLY 381
             +   E     +SF         TG+G+ +L + I  I+  NK          ++R   
Sbjct: 289 APSACTELFMXGNSFSKHIFTCAVTGQGISDLESAIIEIVGLNKIPAGGRRWTVNQRQCE 348

Query: 382 HLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439
            L +T   L  + S  E++  LD    +LR A+++LG+I+G    E++L  IF KFCIG
Sbjct: 349 QLVRTKEALARLISSIEEEMPLDFWTIDLREAALALGQISGEDISEEVLTNIFGKFCIG 407


>gi|269468659|gb|EEZ80299.1| GTPase [uncultured SUP05 cluster bacterium]
          Length = 203

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/192 (41%), Positives = 117/192 (60%), Gaps = 4/192 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H + TI A+++      I I+R+SG  C ++ + +     P PR A    FF  DG  
Sbjct: 1   MSHNETTICALASSTGQGGIGIVRVSGARCIEIAKKMLGHV-PKPRYAHYGSFFNQDGVE 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +DKG+ + FP+P SFTGED  EF  HGGI V+  +LE    + ++  A PGEFS+RAF N
Sbjct: 60  IDKGVALFFPAPNSFTGEDVLEFQGHGGILVMRSLLESAMALGSIA-AEPGEFSKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DLL+AE++ADLI + +E   R ++  +SGE S         L  +R F+EA +DFS+
Sbjct: 119 GKMDLLQAEAVADLIDASSEQSARSALRSLSGEFSDQVNALTKALIELRVFVEATIDFSD 178

Query: 181 EEDVQNFSSKEV 192
           EE   +FS +E+
Sbjct: 179 EE--IDFSDEEI 188


>gi|325108824|ref|YP_004269892.1| tRNA modification GTPase mnmE [Planctomyces brasiliensis DSM 5305]
 gi|324969092|gb|ADY59870.1| tRNA modification GTPase mnmE [Planctomyces brasiliensis DSM 5305]
          Length = 471

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 139/471 (29%), Positives = 221/471 (46%), Gaps = 46/471 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC-----------EFICKKKKPFPRKASLRYFF 54
           ETI A+++   P    I+R+SG     +            EF  ++ K +P +  L    
Sbjct: 11  ETIAALASAPGPGQRGIVRISGEETVALLNSLLEDSPNAPEFDNRRAKRYPVEICL---- 66

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
           G  G      +  V+P   S+TG+ SAE H+ G   +++ +L  + K+   R A PGEF+
Sbjct: 67  GERGGSFPMAVH-VWPGQRSYTGQPSAELHLLGAPPILDWLLGRIYKL-GARPAQPGEFT 124

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            R+F +G++ L++AE++  +I +    Q  ++++ ++G +S    +  D+L    + +EA
Sbjct: 125 LRSFLSGRLSLVQAEAVLGVIDARGNAQLDVALQQLAGGVSQRMRRMRDQLLEDLADLEA 184

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LDF  EED++     E  + +   +++++                +IV+ G  NAGKSS
Sbjct: 185 GLDFV-EEDIEFIDRAEFADRLQNWQSEVALLCEAADRRMHSAEEPRIVLAGLPNAGKSS 243

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           LFNAL   + AIV+DI GTT D L     L G  V I DTAG     + + +  + + F 
Sbjct: 244 LFNAL-TGETAIVSDIEGTTTDYLVGRTQLTGTNVAIFDTAGWETGSNPIGE--LAQVFR 300

Query: 295 E--VENADLILLLKEINSKKEISFPKNIDF----------IFIGTKSDLYSTYTEEYDHL 342
           +   E ADLI+     +  K+     +I F          I + TK+D     T   +H 
Sbjct: 301 QSGYEQADLIVWCTPADWSKDQRQADDIHFDKLASGAVPTIRVCTKTDRAKAVTTTEEHE 360

Query: 343 ISSFTGE-----------GLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL 390
            ++  G            GL+ L   I   +S N+ +       +  R    L +T  +L
Sbjct: 361 DAARNGRFTCGATATQAGGLDALKAAIAEAVSENQGQSQELLGSTAARCRDSLFRTRSHL 420

Query: 391 EMAS-LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E A  L E   G + +AE LR A   LG I G V  + LLD +FSKFCIGK
Sbjct: 421 EEACHLAETSLGDEFLAEELRGAIQELGVILGHVYTDDLLDRVFSKFCIGK 471


>gi|257890523|ref|ZP_05670176.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,410]
 gi|257826883|gb|EEV53509.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,410]
          Length = 339

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 194/346 (56%), Gaps = 33/346 (9%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++D+ 
Sbjct: 2   NGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNIDYP 61

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL N L
Sbjct: 62  EYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHL 121

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  A
Sbjct: 122 LREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKALAEA 181

Query: 300 DLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-YDHL--------IS 344
           DLILL+    + + ++ E  +     +  I +  K+DL +   +E    L        IS
Sbjct: 182 DLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEPVFSIS 241

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK---- 398
               +GL    ++++S +S+ F    FS  + +R   ++S T  +  LE ASL+ +    
Sbjct: 242 VAKNDGL----DRLESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEEVIA 293

Query: 399 --DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D G+  D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 294 GIDSGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 339


>gi|260902393|ref|ZP_05910788.1| putative tRNA modification GTPase TrmE [Vibrio parahaemolyticus
           AQ4037]
 gi|308107141|gb|EFO44681.1| putative tRNA modification GTPase TrmE [Vibrio parahaemolyticus
           AQ4037]
          Length = 319

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 161/314 (51%), Gaps = 30/314 (9%)

Query: 155 SSLYGQWIDKLT----------HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS 204
           + LY ++ D L+          H+R ++EA +DF EEE +   +  +V  D+  + +++ 
Sbjct: 8   NPLYNRYKDSLSAHPDAGGIAIHLRIYVEAAIDFPEEE-IDFLADGKVAGDLQAIIDNLD 66

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           +   +   G I+R G K+VI G  NAGKSSL NAL+ K+ AIVTDI GTTRDVL   + +
Sbjct: 67  AVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHI 126

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEI----- 314
           +G  + I DTAG+R+  D VEK GI+R + E+  AD +L +      +    KEI     
Sbjct: 127 DGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLFMVDGTTTDATDPKEIWPDFV 186

Query: 315 -SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
              P++I    I  K+D            +     +S+ TG G++ L N +K  +     
Sbjct: 187 DRLPESIGMTVIRNKADQTGEDMGICHVNDPTLIRLSAKTGAGVDALRNHLKECMGFS-G 245

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVE 426
                  + +RHL  L +  ++L++     E     +I+AE LR+    L +ITG    +
Sbjct: 246 NTEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGEILAEELRITQQHLNEITGEFSSD 305

Query: 427 QLLDIIFSKFCIGK 440
            LL  IFS FCIGK
Sbjct: 306 DLLGRIFSSFCIGK 319


>gi|168701783|ref|ZP_02734060.1| tRNA modification GTPase TrmE [Gemmata obscuriglobus UQM 2246]
          Length = 422

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 127/430 (29%), Positives = 207/430 (48%), Gaps = 20/430 (4%)

Query: 23  IRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-------GLDGRILDKGLLIVFPSPESF 75
           +R+SGP+   V   +   + P P     R F        G+   +    +L  F  P+S+
Sbjct: 1   MRVSGPNARAVVARVFAAE-PLPTSPGSRRFVRGVLRLSGVSSPL--PAVLYFFAGPKSY 57

Query: 76  TGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLI 135
           TG+D AE H+ G   +V  ++ +L      R A PGEF+ RAF  GK DL +AE++  +I
Sbjct: 58  TGQDLAELHLVGSPPLVERLISDLLSA-GARPARPGEFTMRAFLAGKKDLPQAEAVQAVI 116

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            + T+     ++E ++G +S       D L ++ + +EA LDF+ +ED++  +    +  
Sbjct: 117 EAGTDSDLSAALEQLAGGVSRPLDALRDDLLNLLADVEAALDFA-DEDIEFVTQAATVAR 175

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +      +     Q     +     ++ ++G  NAGKSSLFNALA    A+V+ + GTTR
Sbjct: 176 VRGAVEHLEMVRKQLDARTLSGRSVRVALVGLPNAGKSSLFNALA-SGAALVSPVAGTTR 234

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----K 311
           D LT  L L G  V++ DTAG  +  D +E++  +    +   AD+I+   E  +     
Sbjct: 235 DYLTKPLALAGVPVELVDTAGWLDATDTIEEQAQRLGAEQATRADVIVWCDESGAFGARD 294

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           K        + + + TKSDL S  + E   L  S    G  +L+       +    +   
Sbjct: 295 KTHLRATGAELLKVRTKSDLTSEVS-EGQSLACSVIAPGGLDLLLAALVDAATSLTRSAL 353

Query: 372 SIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
           + PS  R   H+   + +L E  +L  +    +++A  LR A   LG++TG +    LLD
Sbjct: 354 A-PSQSRCRGHVLACLEHLWEAETLAARGEHPELLALALRGALEPLGEMTGAIYTNDLLD 412

Query: 431 IIFSKFCIGK 440
            IFS+FCIGK
Sbjct: 413 RIFSRFCIGK 422


>gi|317054820|ref|YP_004103287.1| tRNA modification GTPase TrmE [Ruminococcus albus 7]
 gi|315447089|gb|ADU20653.1| tRNA modification GTPase TrmE [Ruminococcus albus 7]
          Length = 455

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 228/470 (48%), Gaps = 53/470 (11%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCE-----FICKKKKPFPRKASLRYFFGLDG-RI 60
           T+ A+S       IS+IR+SG +           F C+  +   +  +  Y    DG + 
Sbjct: 3   TVCAISPPLAEGGISVIRISGENAINCAAEVFKPFTCESVEKM-QGYTCAYGQIHDGDKT 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+L VF +P S+TGED  E   HGGI V   +L  L        A  GEF++RA  N
Sbjct: 62  VDDGVLTVFRAPHSYTGEDVCEISCHGGIYVTKKVLR-LCLENGCEPAQAGEFTKRAMLN 120

Query: 121 GKIDLLEAESLADLISSETE---MQRRLSMEG-MSGELSSLYGQWIDKLTHIRSFIEADL 176
           GK+ L +AE++ D I+++ E       L+ +G + G++  + G  +  L  + +++    
Sbjct: 121 GKLSLTQAEAVMDTIAAQGEYALASANLTRQGSLFGQIHEVTGDLVKLLGELAAWV---- 176

Query: 177 DFSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           D+ EE+   V+  + +E +   L +   +   I+    G +I+ G   VI G  N GKS+
Sbjct: 177 DYPEEDLPAVEETALRESIGKALSVTGKL---IADHDNGMLIKQGIDTVIAGKPNVGKST 233

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT-- 292
           L N L   D +IVT++ GTTRDV+     L   + ++SDTAGIR+T+D VEK G++    
Sbjct: 234 LMNLLLGYDRSIVTEVAGTTRDVIEESAKLGELVFRLSDTAGIRDTEDRVEKIGVEMAEK 293

Query: 293 -------FLEV------ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
                   +EV       + D I LL+++ +  + S       + +  KSDL S   E +
Sbjct: 294 RLDECMFVIEVFDTSVRPDEDDIALLEKVKASGKRS-------LIVLNKSDLESAVDEGF 346

Query: 340 DH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
                     IS+   +   ++   ++ I + +      +I +++R    L +    L+ 
Sbjct: 347 FRGYSENIVYISAKNRDDRAQIQAAVEKIFTPENYDANSTIFANERQKQCLDKAHTNLK- 405

Query: 393 ASLNEKDCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A+L   D G  LD +   +  A+ SL ++TG    E ++  +FSKFC+GK
Sbjct: 406 AALEALDMGETLDAVTVMVDFAADSLLELTGEKATEAVVAEVFSKFCVGK 455


>gi|149176567|ref|ZP_01855180.1| tRNA modification GTPase [Planctomyces maris DSM 8797]
 gi|148844680|gb|EDL59030.1| tRNA modification GTPase [Planctomyces maris DSM 8797]
          Length = 457

 Score =  145 bits (367), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 141/467 (30%), Positives = 229/467 (49%), Gaps = 48/467 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGP---SCFQVCEFICKKKKPFPRKASLRY-----FFGLD 57
           +TI A+++     A  +IR+SG     C Q C F    K    R  + RY       G D
Sbjct: 7   DTIVALASAPGSGAAGLIRISGNEILPCLQDC-FDSDAKWQNSRLPT-RYSGTIKLAGSD 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            R+   G L  +P+  SFTG+  AEFH      ++   +E LA     R+A PGEF+ RA
Sbjct: 65  SRL--PGALYFWPTARSFTGQPLAEFHTVSSPPLLESAIENLAAH-GARMARPGEFTLRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F  G++DL++AE++  +I +    +  L++  ++G +S+  G     L  + S +EA LD
Sbjct: 122 FLAGRVDLVQAEAVLGVIDAYDHEELNLALSQLAGGVSTRIGAARVDLLELLSELEAGLD 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKN-------DISSHI-SQGKLGEIIRNGYKIVILGHSN 229
           F  EED++    + ++N +  ++        D S  + S G L         +V+ G  N
Sbjct: 182 FV-EEDIEFIDRETLVNRLQKIREFCEQLYLDSSERMESTGSL--------SLVLAGLPN 232

Query: 230 AGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           AGKS+L+NAL   +  A+V+DI GTTRD L   L+  G  +++ DTAG+      +    
Sbjct: 233 AGKSTLYNALVGDEQAALVSDIEGTTRDYLVTSLNWSGQPIQLIDTAGLEAGVHEISVSA 292

Query: 289 IKRTFLEVENADLILL---------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
            +    ++  ADL++          L+ I+  +     ++++ I + TKSDL      + 
Sbjct: 293 QQFRQQQMAQADLVVWCTAADLRPELRSIDQSQRTQLAESLNVITVLTKSDLSPALNGDA 352

Query: 340 DHLISSFTGE--GLEELINKIKSILSNK---FKKLPFSIPSHKR-HLYHLSQTVRYLEMA 393
              ++    E  GLE+L + + S LS      ++L  S  S  R  L     +++  E A
Sbjct: 353 ACEVALSVAEESGLEDLKHAVLSRLSESRRGSRQLIGSTASRCRDSLRQAGHSLQAAEEA 412

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +   G +++A  +R A   LG+I G V  + +LD IFSKFCIGK
Sbjct: 413 A--QLQVGEELVAIEIRGALQHLGQIVGQVYTDDILDRIFSKFCIGK 457


>gi|153820111|ref|ZP_01972778.1| probable tRNA modification GTPase TrmE [Vibrio cholerae NCTC 8457]
 gi|126509342|gb|EAZ71936.1| probable tRNA modification GTPase TrmE [Vibrio cholerae NCTC 8457]
          Length = 294

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 156/291 (53%), Gaps = 20/291 (6%)

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R ++EA +DF EEE +   +  +V  D+  + +++++   +   G I+R G K+VI G 
Sbjct: 6   LRIYVEAAIDFPEEE-IDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGR 64

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL NAL+ K+ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK 
Sbjct: 65  PNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKI 124

Query: 288 GIKRTFLEVENADLILLL-----KEINSKKEI------SFPKNIDFIFIGTKSD-----L 331
           GI+R + E+  AD +L +      E    ++I        P+NI    I  K+D     L
Sbjct: 125 GIERAWEEIRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPL 184

Query: 332 YSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
              +  +   + +S+ TG+G++ L   +K  +     +      + +RHL  L +   +L
Sbjct: 185 GICHVNQPTLIRLSAKTGQGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHL 243

Query: 391 EMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +     E     +I+AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 244 AIGQQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 294


>gi|208435318|ref|YP_002266984.1| putative thiophene/furanoxidation protein [Helicobacter pylori G27]
 gi|208433247|gb|ACI28118.1| putative thiophene/furanoxidation protein [Helicobacter pylori G27]
          Length = 404

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 127/411 (30%), Positives = 205/411 (49%), Gaps = 27/411 (6%)

Query: 50  LRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109
           +R  F  +G +LDK L+I F +P SFTGED  E   HG   +   IL+    +   RLA 
Sbjct: 1   MRDIFS-NGVLLDKALVIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAK 58

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
            GEFS++AF N K+DL E E+   LI  E E         + GEL     +  + L  + 
Sbjct: 59  AGEFSKKAFLNHKMDLSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLL 118

Query: 170 SFIEADLDFSEEEDVQNF---SSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVIL 225
           +  E  +D+SEE+   +F    S+ +   I   K+ +    +Q +     RN G+ + I+
Sbjct: 119 ASSEVLIDYSEEDIPSDFLDGVSQNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIV 173

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  NAGKSSL NA+  ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E
Sbjct: 174 GKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIE 233

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTE 337
           + GI+++   +EN D+IL + +++   E      ID         I +  K+DL      
Sbjct: 234 RLGIEKSLKSLENCDIILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKNDLAPKLEL 293

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY---- 389
           E            LE      ++ L +  +K+    P     +K  L  L+Q        
Sbjct: 294 EVLKSYLKIPYALLETNTLNSRACLKDLSQKISEFFPKLDTQNKLLLTSLAQKTALENAI 353

Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +E+ +       L++ + ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 354 IELQNAKNHLETLELFSYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 404


>gi|255081831|ref|XP_002508134.1| hypothetical protein MICPUN_60555 [Micromonas sp. RCC299]
 gi|226523410|gb|ACO69392.1| hypothetical protein MICPUN_60555 [Micromonas sp. RCC299]
          Length = 662

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 166/333 (49%), Gaps = 46/333 (13%)

Query: 4   EKETIFAVSTGALPSA--ISIIRLSGPSCFQVCEFI----------CKKKKPFPRKASLR 51
           + +TI A++T  +P+A  ++IIRLSGP   +    +            ++   P   +  
Sbjct: 92  DGDTIVAIATPVVPNAGGVAIIRLSGPRAVEAARAVFRPASRAARAAAREGAPPSSHTAL 151

Query: 52  YFFGLDGR--------------------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAV 91
           Y   +D                      ++D+ L++    P S+T ED  E H HGG   
Sbjct: 152 YGVVVDPTSVPNGSRRVNDEDVDADALDVVDEVLVLPMLRPRSYTAEDVVEIHCHGGSVC 211

Query: 92  VNGILEELAK----------MPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141
           V  +L  L +             +RLA PGEF+ RAF NG++DL +AE++  L+++ TE 
Sbjct: 212 VQRVLSLLTRRDLLDPSGDTAGGVRLARPGEFTLRAFLNGRLDLTQAEAVHSLVAARTER 271

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
               ++  + G L+S       +   + + +EA LDF  E+++    S  +  ++  ++ 
Sbjct: 272 AADGALAALRGGLASPVRDARARCVDLLAELEARLDF--EDELTPLDSDAIAAEVAAVRA 329

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           D++  ++  + G+++  G  + I+G  NAGKSSL NA ++ + AIVT I GTTRDV+   
Sbjct: 330 DVAKVLATARRGKLLDTGVTVAIVGKPNAGKSSLLNAWSRSERAIVTPIAGTTRDVVEAR 389

Query: 262 LDLEGYLVKISDTAGIRETD--DIVEKEGIKRT 292
           ++  G  V + DTAGIR     D VE  G+KR+
Sbjct: 390 VECAGLPVTLLDTAGIRRGAGVDEVEAIGVKRS 422



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 343 ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
           +S+ TG GLEEL  ++  I+          +  +++R    L Q +  LE   A + + +
Sbjct: 562 VSAVTGAGLEELERELGRIVEGGSVDAEGGAWSANQRQAEALEQALGALERLEAIVVDGN 621

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D    +LR A+++LG +TG    E +LD++F+KFCIGK
Sbjct: 622 LPVDFWTIDLREAAMALGAVTGEDVSEDVLDVVFTKFCIGK 662


>gi|283782054|ref|YP_003372809.1| small GTP-binding protein [Pirellula staleyi DSM 6068]
 gi|283440507|gb|ADB18949.1| small GTP-binding protein [Pirellula staleyi DSM 6068]
          Length = 466

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/392 (30%), Positives = 194/392 (49%), Gaps = 22/392 (5%)

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+V+P   S+T + + E H  G   +++ ++   A     R A  GEF+ RA   G++DL
Sbjct: 80  LLVWPGRRSYTRQPTVEIHTVGCTPILD-VITSTACAAGARAARRGEFTLRALLAGRLDL 138

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++  +I + +  Q   ++  ++G L+S      ++L  + S +EA LDF++E D+ 
Sbjct: 139 TQAEAVLGVIEARSPQQLSTALSQLAGGLASPLAALREELLDLLSLVEAGLDFADE-DLD 197

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             SS E+ + I  +   + +   Q     +  +  ++++ G  NAGKSSLFNALA    A
Sbjct: 198 LLSSDELTSRIEAVAAQVIALEDQLASRAVRTSRPRVLLAGRPNAGKSSLFNALAGYHAA 257

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR--TFLEVENADLIL 303
           IV D+ GTTRD LT  + L    + + DTAG+ E     + + + +  T      ADL+L
Sbjct: 258 IVADVAGTTRDYLTQTIRLGLLEIDLLDTAGLDEMVPTTKLDALAQQLTISAAAEADLVL 317

Query: 304 LL---KEINSKKEISFPKN----IDFIFIGTKSDLYSTY-----TEEYDHLISSFTGEGL 351
                + +   +E + P+        + IGTK DL S         + D L+SS   EGL
Sbjct: 318 WCIDARRLGDPRE-AIPEVWKTLAPAVVIGTKCDLLSPAEMAQGRSQVDLLVSSAANEGL 376

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR--YLEMASLNEKDCGLD-IIAEN 408
            +L  +I   ++     L  ++ S      H   T R    E A +     G D ++A  
Sbjct: 377 AQLRERIAQEVA--LDALSPAVASTAARSQHSLATARASLAEAAQIARSAIGADELVAAE 434

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LR+A  +LG I G    + +LD +FSKFCIGK
Sbjct: 435 LRIAIDALGDIAGVTYTDDILDRVFSKFCIGK 466


>gi|296121960|ref|YP_003629738.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776]
 gi|296014300|gb|ADG67539.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776]
          Length = 461

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 194/392 (49%), Gaps = 20/392 (5%)

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L ++P   S+ G+  AE  + G   ++   L E  +    R A PGEF+ RAF NGK+DL
Sbjct: 73  LTLWPDHRSYCGQPQAEITLAGCQPLLEATLAECFRH-GARGAQPGEFTLRAFLNGKVDL 131

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++  +I +  E   R+++  +SG +S       + L ++ + IEA LDF  +ED++
Sbjct: 132 IQAEAVLGVIEARHEEDLRVALNQLSGGVSQPLIDLRNDLLNLLADIEAGLDFV-DEDIE 190

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL-GHSNAGKSSLFNALAKKDV 244
                +V+  +      + S I       +  N  K V+L G  NAGKS+L N L+  D 
Sbjct: 191 FVPRSQVIQRLQTAFAQLKS-IEGRSPSRLTSNSRKRVVLAGRPNAGKSTLLNRLSNADA 249

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+ I GTTRD L   +  EG    + DTAG  E+ + + +   ++   ++ ++D +L 
Sbjct: 250 ALVSPIAGTTRDYLLWSIAWEGLSFDLIDTAGWEESLNPIAEASQRQREEQMASSDFLLW 309

Query: 305 -------LKEINSKKE---ISFPKNIDFIFIGTKSDLYST--YTEEYDHLI--SSFTGEG 350
                  L E    +E   ++  K    I I TK DLY    +    D L+  S+  G G
Sbjct: 310 CSPANLSLAEAAEDQEFFDLAASKTSKAIRITTKFDLYEPEKHYLPKDSLVSLSAVNGTG 369

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYH-LSQTVRYLEMASLNEKDCGLD-IIAEN 408
           L++L   ++ +L++      F + +     +  L    R L+ A    +    D ++A +
Sbjct: 370 LDQLAGLLRKLLTSDHSLSQFWLGTTAARCHEVLGSAFRALDSALQAARSGTADELLAAD 429

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LR    +LG +TG    E LLD IFS+FCIGK
Sbjct: 430 LRQVINALGLMTGATQTEDLLDRIFSRFCIGK 461


>gi|222640528|gb|EEE68660.1| hypothetical protein OsJ_27256 [Oryza sativa Japonica Group]
          Length = 415

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 188/365 (51%), Gaps = 48/365 (13%)

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+ RAF NG++DL +AE+++ LIS+++      ++ G+ G  S+L      +   + + 
Sbjct: 63  EFTVRAFLNGRLDLAQAENVSRLISAKSAAAADSALAGIQGGFSALVKSLRSRCIELLTE 122

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           IEA LDF  E+++       +++ I  ++ ++   +      +++++G ++ I+G  N G
Sbjct: 123 IEARLDF--EDELPPLDLTMLVSKINGMRQEVQDALDTANYDKLLQSGLQVAIIGRPNVG 180

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NA +K + AIVT+I GTTRDV+  ++ + G  + + DTAGIRETDDIVEK G++R
Sbjct: 181 KSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGIRETDDIVEKIGVER 240

Query: 292 TFLEVENADLILL-LKEIN---------------SKKEISFPKNIDFIFIGTKSDLYSTY 335
           +      ADLI++ +  ++               SKK    P  +  + +  K D     
Sbjct: 241 SEAAALGADLIIMTISAVDGWTEDDTKLIEHVLISKKSSGAP--VPMVLVINKVDCAPFI 298

Query: 336 T-EEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR------- 378
           + E+++     F         TG+G+ EL   I  +   +       +PS  R       
Sbjct: 299 SGEQFEQFHGVFKKHVQTCAVTGKGISELEKAIIEVRGLE------PVPSEGRRWTVNQR 352

Query: 379 ---HLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435
               L    Q    LE +S+NE+   +D    +LR A+++L  I+G    E++L  IFSK
Sbjct: 353 QFEQLLRTQQAFTRLE-SSINEQ-LPMDFWTIDLREAALALATISGEDISEEVLSSIFSK 410

Query: 436 FCIGK 440
           FCIGK
Sbjct: 411 FCIGK 415


>gi|291333887|gb|ADD93568.1| tRNA modification GTPase TrmE [uncultured marine bacterium
           MedDCM-OCT-S04-C293]
          Length = 341

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 165/301 (54%), Gaps = 7/301 (2%)

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           +K L+  F  P S+TGED AE   HG   +V  ++E+  ++   R A PGEF++RAF N 
Sbjct: 12  EKCLVSCFEGPSSYTGEDVAEISCHGNPLIVRALIEKCIEL-GARNAKPGEFTQRAFLNS 70

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           KIDL ++E++ DLI++ +      + + +SG       + ++ L  IR  +E+ +DFS++
Sbjct: 71  KIDLAQSEAVIDLINASSSAAMVAASKSVSGNFGENVDKILESLRKIRMLVESSIDFSDQ 130

Query: 182 EDVQNFSSKEVL-NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   +F     L  D   L  D    I +G     I + +++V+ G  N GKSS+ N L+
Sbjct: 131 DTNIDFKQINALFKDFKLLLGDFDERIEEGIR---IMSEHRVVVAGPPNVGKSSIMNILS 187

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENA 299
            ++ +IVT+I GTTRD +   + ++   V I DTAGI  ET D +E+ GI ++   +E A
Sbjct: 188 GEEASIVTEIKGTTRDPIYKKIQIKDLQVDIYDTAGINDETTDEIERLGIDKSRSLIEGA 247

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
           DL+L + +  + ++ S  KN + + +  KSD+ S   E    ++S+   + +  L  K  
Sbjct: 248 DLVLEVVDAEN-RDFSLEKNENILKVFNKSDISSPPKEFGGVIVSALEKKNISALEEKFS 306

Query: 360 S 360
           S
Sbjct: 307 S 307


>gi|229087972|ref|ZP_04220079.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-44]
 gi|228695341|gb|EEL48219.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-44]
          Length = 326

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 176/327 (53%), Gaps = 21/327 (6%)

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI ++T+    +++  M G LS+L G+   ++    + +E ++D+ E +DV+  +   +
Sbjct: 2   DLIRAKTDRAMSVAINQMEGRLSNLIGRLRQEILETLAHVEVNIDYPEYDDVEEMTHNIL 61

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +    +++ +I   +   K G+I+R G    I+G  N GKSSL N+L ++  AIVTDI G
Sbjct: 62  IEKATYVRGEIKKILETSKQGKILREGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAG 121

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  ADL+L++  +N  +
Sbjct: 122 TTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMGQADLVLIV--VNYSE 179

Query: 313 EISFP--------KNIDFIFIGTKSDLYSTYTEEY-------DHLISS--FTGEGLEELI 355
            ++          +  DFI I  K+DL      E        + +I++     +G++EL 
Sbjct: 180 ALTIEDEELFRAVQGKDFIVIVNKTDLPKQIDMERVTKLAGDNRIITTSLIEEKGVDELE 239

Query: 356 NKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLAS 413
             I  +      +    +  S+ RH+  L+Q  + + +     E    +D++  +L    
Sbjct: 240 KAIADLFFEGAIESADMTYVSNARHIGLLTQAEKTIGDAIEAIENGVPIDMVQIDLTRTW 299

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LG+ITG    E L+D +FS+FC+GK
Sbjct: 300 EILGEITGDTVHESLIDQLFSQFCLGK 326


>gi|242209081|ref|XP_002470389.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730559|gb|EED84414.1| predicted protein [Postia placenta Mad-698-R]
          Length = 647

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 116/202 (57%), Gaps = 18/202 (8%)

Query: 102 MPNLRL-----------ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM 150
           MP LRL             PGE SR A +  ++DL + E L DLI +ETE QRR +++  
Sbjct: 450 MPFLRLIDSPPFDAPPRCRPGELSRCASKGRRLDLTQVEGLKDLIYAETESQRRAALKAA 509

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
            G          D+   +R  I    DF E ED++  +       +  L   + +H++  
Sbjct: 510 GGITR-------DRFEQLREEIIQCTDFEEGEDIEEGTYDLARLRVQDLCRTLEAHLADN 562

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           + GEI+R+G ++ I G  NAGKSSL N LA+++ AIVT IPGTTRD+L + LD+ G  V 
Sbjct: 563 RRGEILRSGIRLAIFGPPNAGKSSLLNFLAQREAAIVTPIPGTTRDILELSLDIGGLPVL 622

Query: 271 ISDTAGIRETDDIVEKEGIKRT 292
           I+DTAGIR+T+D+VE  G++R 
Sbjct: 623 IADTAGIRQTEDVVESIGVERA 644


>gi|224534062|ref|ZP_03674645.1| tRNA modification GTPase TrmE [Borrelia burgdorferi CA-11.2a]
 gi|224512761|gb|EEF83129.1| tRNA modification GTPase TrmE [Borrelia burgdorferi CA-11.2a]
          Length = 373

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 196/376 (52%), Gaps = 26/376 (6%)

Query: 86  HGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRL 145
           HG +  +  I++   K    R+A PGEF+ RAF   KIDL +AE++ ++I ++T     L
Sbjct: 3   HGSVIGIKKIIDLFLK-SGFRMAEPGEFTLRAFLAKKIDLTKAEAIHEIIFAKTNKTYSL 61

Query: 146 SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS 205
           ++  +SG L          + +  S +   LD+    +V +       + IL  K ++  
Sbjct: 62  AVNKLSGALFVKIDAIKKSILNFLSAVSVYLDY----EVDDHEISIPFDLILSSKAELKK 117

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            I+  K+ E I NG  +V+ G  NAGKSSLFN   KKD +IV+  PGTTRD +    +L+
Sbjct: 118 LINSYKVYEKIDNGVALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELD 177

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISF----PK 318
           G L  + DTAG+R+ D+ VE+ GI+++   ++ A L++ + +++S   K +  F      
Sbjct: 178 GILFNLFDTAGLRDADNFVERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFIDSNKS 237

Query: 319 NIDFIFIGTKSDL-YSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKFK 367
           N   +F+  K DL  +  TEE+            +IS+   EG++ L +KI++++S +  
Sbjct: 238 NSKILFVLNKIDLKINKSTEEFVRSKVLNSSNLIMISTKNLEGIDILYDKIRALISYERV 297

Query: 368 KLPFS--IPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           ++     I S  R +  L +     L++ S  ++    D++A +       LG+ITG V 
Sbjct: 298 EIGVDDIIISSSRQMQLLEKAYALILDLLSKIDRQVSYDMLAFDAYEIINCLGEITGEVS 357

Query: 425 VEQLLDIIFSKFCIGK 440
            E +LD +F  FC+GK
Sbjct: 358 SEDVLDNMFKNFCLGK 373


>gi|229106078|ref|ZP_04236691.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-28]
 gi|228677344|gb|EEL31608.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-28]
          Length = 326

 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 174/325 (53%), Gaps = 17/325 (5%)

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI ++T+    +++  M G LS L G+    +    + +E ++D+ E +DV+  +   +
Sbjct: 2   DLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYPEYDDVEEMTHNIL 61

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+L ++  AIVTDI G
Sbjct: 62  IEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAG 121

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL----KEI 308
           TTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  ADL+L++    + +
Sbjct: 122 TTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQADLVLVVVNYSEAL 181

Query: 309 NSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS--FTGEGLEELINK 357
            ++ E  F   +  DFI I  K+DL      E        + +I++     +G++EL   
Sbjct: 182 TNEDEELFRAVQGKDFIVIVNKTDLPQVIDMERVTELAAGNRVITTSLIEEQGIDELEKA 241

Query: 358 IKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVS 415
           I  +           +  S+ RH+  L+Q  + + +     E    +D++  +L      
Sbjct: 242 IADLFFEGAIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVPIDMVQIDLTRTWEI 301

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG+ITG    E L+D +FS+FC+GK
Sbjct: 302 LGEITGDTVHESLIDQLFSQFCLGK 326


>gi|148668863|gb|EDL01031.1| GTP binding protein 3, isoform CRA_c [Mus musculus]
          Length = 306

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/296 (32%), Positives = 150/296 (50%), Gaps = 28/296 (9%)

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           +++EA +DF E+++++    ++   ++  L+  + SH+   + G+ + +G  +V+ G  N
Sbjct: 14  AYVEAYIDFGEDDNLEEGVLEQADREVRALEVALGSHLRDARRGQRLLSGANVVVTGPPN 73

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
           AGKSSL N L++K V+IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG+
Sbjct: 74  AGKSSLVNLLSQKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGAVEQEGV 133

Query: 290 KRTFLEVENADLIL---LLKEINSKKEISFPKNIDFIFIGTKSD--------------LY 332
           +R    +E AD+IL      ++ S    SF   +    +    D              L 
Sbjct: 134 RRARHRLEQADIILGVLDASDLASSSSCSFLDTVVTPLLAQSQDSGGQRLLLLLNKSDLL 193

Query: 333 STYTEEYD-----H-LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLS 384
           S      D     H L+S  TG G++ L+  +K+ L+          P  +  RH YHL 
Sbjct: 194 SANAPACDIALPPHLLLSCHTGAGMDSLLQALKTELAAVCGDPSTGPPLLTRVRHQYHLQ 253

Query: 385 QTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +  L    L      L + AE LR A   L  +TG    E++LD+IF  FC+GK
Sbjct: 254 GCLDALGHYQLATD---LALAAEALRQARRQLNHLTGGGGTEEILDLIFQDFCVGK 306


>gi|87311361|ref|ZP_01093482.1| tRNA modification GTPase [Blastopirellula marina DSM 3645]
 gi|87285941|gb|EAQ77854.1| tRNA modification GTPase [Blastopirellula marina DSM 3645]
          Length = 445

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 223/454 (49%), Gaps = 32/454 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKP--FPRKASLRYFFGLDGRIL 61
           ++TI A+ +G+  +   +IR+SGP  F+  E ++  ++ P  F R++++         + 
Sbjct: 6   EDTIVAIGSGSGGALRGVIRISGPDAFRCVEPWLELRETPATFGRRSAMAAALAK---VA 62

Query: 62  DKGL---LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEFSR 115
           D+ L   L  +P   S+T + S E H  G       +LEEL   A     R+A PGEF+ 
Sbjct: 63  DRQLACDLYYWPDDRSYTRQPSIEIHTIGSPP----LLEELVAAACRHGARMAEPGEFTL 118

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF  G++DL +AE++  +I +E + + + S+  ++G LSS   +   +L  + + +EA 
Sbjct: 119 RAFLAGRLDLTQAEAVLGVIDAEGDARLKQSLAQLAGGLSSPLAEARRQLLELLAHLEAG 178

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF  EED++  SS  +   +   +  +   + Q    +      K+V  G  N GKSSL
Sbjct: 179 LDFV-EEDIEFISSAALCAQLQDAQRCVEQSLMQLSGRDAGEKAIKVVFCGAPNVGKSSL 237

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
           FNA+  +  AIV D+ GTTRD L   + + G  V + DTAG  E     ++   +    +
Sbjct: 238 FNAVLGESAAIVADLAGTTRDTLQKSIVIGGEPVALIDTAGREEVAAGPQQSAQRLGSDQ 297

Query: 296 VENADL-ILLLKEINSKKEISF------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           V  ADL I+      +  +  +      P++   + + TK DL +          S  TG
Sbjct: 298 VSRADLRIICFDASRAATDAEWRLWNESPEDRRLLVL-TKGDLATATITAG-ITTSVATG 355

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIA 406
            G    I  +++ ++ K   LP +  +         +       A+LN   CGL  ++IA
Sbjct: 356 AG----IAALRAAIAEKLAALPAADDATASRCRASLEQATNSLAAALNAAQCGLGEELIA 411

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +R+A   LG++ G +  + +LD+IFS+FCIGK
Sbjct: 412 VEIRMALSELGRVVGAIATDDILDVIFSRFCIGK 445


>gi|289808227|ref|ZP_06538856.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 185

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 111/186 (59%), Gaps = 1/186 (0%)

Query: 38  CKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE 97
           C  K P PR A    F  +DG  LD+G+ + FP P SFTGED  E   HGG  +++ +L+
Sbjct: 1   CWAKLPKPRYADYLPFKDVDGSALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLK 60

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSL 157
            +  +P +R+A PGEFS RAF N K+DL +AE++ADLI + +E   R ++  + G  S+ 
Sbjct: 61  RILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSAR 120

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
               ++ LTH+R ++EA +DF +EE +   S  ++   +  +  D+ +  ++ + G ++R
Sbjct: 121 VNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLR 179

Query: 218 NGYKIV 223
            G K+V
Sbjct: 180 EGMKVV 185


>gi|207741910|ref|YP_002258302.1| trna modification gtpase protein [Ralstonia solanacearum IPO1609]
 gi|206593296|emb|CAQ60223.1| trna modification gtpase protein [Ralstonia solanacearum IPO1609]
          Length = 292

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 151/292 (51%), Gaps = 27/292 (9%)

Query: 173 EADLDFSEEEDVQNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           +A LDF EEE   NF  + +    +  ++  +   ++Q + G ++R G  +V+ G  N G
Sbjct: 4   KATLDFPEEE--INFPKAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVG 61

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+R
Sbjct: 62  KSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIER 121

Query: 292 TFLEVENADLILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           T+  +  AD++L L                 I+++     P  +  + +  K DL    T
Sbjct: 122 TWAAIARADVVLHLLDAADYRAHGLSAEDAAIDARIAGHVPAGVPTLRVINKIDLSGAAT 181

Query: 337 ------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                 +  +  +S+  G G+E L   +  I   +       + + +RHL  L     +L
Sbjct: 182 PARVDAQPPEVWLSARDGSGIELLRAVLLEIAGWQGGGEGLYL-ARERHLSALRTAKDHL 240

Query: 391 EMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +A+   +++   LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 241 AIAADHADQRAQSLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 292


>gi|213422211|ref|ZP_03355277.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 216

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 109/182 (59%), Gaps = 2/182 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EE 182
           EE
Sbjct: 179 EE 180


>gi|21326644|gb|AAL30084.1| GTP-binding protein [Xanthomonas campestris pv. campestris]
          Length = 243

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 126/246 (51%), Gaps = 3/246 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN    TI A++T A    I I+RLSGP   Q+   +        R A    F    G +
Sbjct: 1   MNASPSTIVAIATAAGTGGIGIVRLSGPQSVQIAAALGIAGLQ-SRHARYARFRDAQGEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + FP+P SFTGE+  E   HG   ++  ++     +   R A  GEFS RAF N
Sbjct: 60  IDDGIAVWFPAPHSFTGEEVVELQGHGSPVLLRQLVARCIAL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       + LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAASDLRAARAARRSLDGVFSRRVDAVSESLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E  +      +V  ++   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 EP-LDTLGGAQVREELTRTRALLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAI 246
             D AI
Sbjct: 238 GSDRAI 243


>gi|169596815|ref|XP_001791831.1| hypothetical protein SNOG_01177 [Phaeosphaeria nodorum SN15]
 gi|160707379|gb|EAT90826.2| hypothetical protein SNOG_01177 [Phaeosphaeria nodorum SN15]
          Length = 385

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 116/201 (57%), Gaps = 10/201 (4%)

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL + ESL + +S+ TE QR+LS+ G +  L+  Y  W   L   R  +EA +DFSE++
Sbjct: 1   MDLPQIESLGETLSASTEQQRKLSVRGTTSSLAVRYEHWRQLLLAARGELEALIDFSEDQ 60

Query: 183 DVQNFSS---KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
                 +     V   +  L+  + +H++    GE++RNG  + +LG  NAGKSSL N +
Sbjct: 61  HFDESPAILCASVAEQVRALRTQMEAHVANAVRGELLRNGISVALLGAPNAGKSSLLNRI 120

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-------ETDDIVEKEGIKRT 292
             +D AIV+   GTTRDV+ + +DL G+LVKI D AG+R       E    VE+EGIKR 
Sbjct: 121 VGRDAAIVSQEAGTTRDVVEVGVDLGGWLVKIGDMAGLRRAGLVGAEAVGAVEQEGIKRA 180

Query: 293 FLEVENADLILLLKEINSKKE 313
                 +D+++++++  ++ +
Sbjct: 181 KQRALESDVLIVVQDATAETD 201


>gi|281419980|ref|ZP_06250979.1| thiophene and furan oxidation protein ThdF [Prevotella copri DSM
           18205]
 gi|281405780|gb|EFB36460.1| thiophene and furan oxidation protein ThdF [Prevotella copri DSM
           18205]
          Length = 341

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 175/347 (50%), Gaps = 35/347 (10%)

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI+S  +   ++++  + G  S+      +KL  + S +E +LDFS+ E
Sbjct: 1   MDLSQAEAVADLIASTNKATHKMALSQLKGHFSNELSLLREKLLKMTSLLELELDFSDHE 60

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +++     E+      + + I++     + G  ++ G  + I+G +N GKS+L N L  +
Sbjct: 61  ELEFADRSELQALAEEINHKITTLAHSFETGNALKQGVAVAIVGKTNVGKSTLLNRLLHE 120

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRDV+     ++G   +  DTAGIR+TDD+VE  GI+RTF ++E A ++
Sbjct: 121 EKAIVSDIHGTTRDVIEDTTLIDGITFRFIDTAGIRKTDDVVENIGIERTFQKMEEAKIV 180

Query: 303 L-LLKEINSKKEISFPK----NIDFIFIGTKSD-------LYSTYTE---------EYDH 341
           + LL E  S  EI   K        + +  K D        +  +T          E   
Sbjct: 181 IWLLDEQPSASEIEEMKLKNQGKKLLVVFNKMDKLENDKLAFDKFTHSCGSDSSESEAPL 240

Query: 342 LISSFTGEG---LEELINKIKSILSNKFKKLPFSIPSHKRHLYH----LSQTVRYLEMAS 394
            IS+ TGE    LE+ + K   I       +  +   H   L      LS+ +  +EM  
Sbjct: 241 FISARTGENVSSLEQALVKAADIPEITENDVIITSARHYEALLRAHDSLSRVLESMEMG- 299

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
                   DIIAE+L++    LG+ITG  +  ++ L+ IF  FCIGK
Sbjct: 300 -----MSGDIIAEDLKMVLEELGEITGGQISSQETLNNIFKHFCIGK 341


>gi|262189625|ref|ZP_06048013.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae CT
           5369-93]
 gi|262034492|gb|EEY52844.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae CT
           5369-93]
          Length = 242

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 128/243 (52%), Gaps = 19/243 (7%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R G K+VI G  NAGKSSL N L+ K+ AIVTDI GTTRDVL   + ++G  + I DTA
Sbjct: 1   MREGMKVVIAGRPNAGKSSLLNVLSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTA 60

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEI------SFPKNIDFIF 324
           G+R+  D VEK GI+R + E+  AD +L +      E    ++I        P+NI    
Sbjct: 61  GLRDASDAVEKIGIERAWEEIRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITV 120

Query: 325 IGTKSD-----LYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           I  K+D     L   +  +   + +S+ TG+G++ L   +K  +     +      + +R
Sbjct: 121 IRNKADQTGEPLGICHVNQPTLIRLSAKTGQGVDALRQHLKECMGFSGNQ-EGGFMARRR 179

Query: 379 HLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437
           HL  L +   +L +     E     +I+AE LR+A   L +ITG    + LL  IFS FC
Sbjct: 180 HLDALERAAEHLAIGQQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFC 239

Query: 438 IGK 440
           IGK
Sbjct: 240 IGK 242


>gi|291520339|emb|CBK75560.1| small GTP-binding protein domain [Butyrivibrio fibrisolvens 16/4]
          Length = 273

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/247 (37%), Positives = 139/247 (56%), Gaps = 29/247 (11%)

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLISS +E+  + S++ +SG L+ +     DK+ +  ++IE+ LD  E  D+ ++  +  
Sbjct: 2   DLISSNSELAMKNSIKQLSGSLNKIIVDLRDKILYETAYIESALDDPEHYDLTDYPVE-- 59

Query: 193 LNDILFLKNDISSHISQG-------KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                 LKN +S  IS+          G I++ G   +ILG  NAGKSSL N L++++ A
Sbjct: 60  ------LKNKVSDMISRVDDLIDSFNSGHILKEGINTLILGKPNAGKSSLLNTLSRRERA 113

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDIPGTTRD L   + + G  + I DTAGIRETDDIVEK G+ +    +++ADLIL +
Sbjct: 114 IVTDIPGTTRDTLEEQITINGVSLNIIDTAGIRETDDIVEKIGVDKALDSIDDADLILFV 173

Query: 306 ----KEINSKKEISFPKNID--FIFIGTKSDLYSTYTEE-----YDHLISSFTG---EGL 351
               + ++        K +D   I +  KSDL S  +EE     Y+  + SF+    +GL
Sbjct: 174 IDSSRPLDENDHFIIDKIMDKKVIILLNKSDLVSKISEEEIYKKYNKPVISFSSVSLDGL 233

Query: 352 EELINKI 358
           + L +KI
Sbjct: 234 KALESKI 240


>gi|307069505|ref|YP_003877982.1| tRNA modification GTPase mnmE (trmE) [Candidatus Zinderia
           insecticola CARI]
 gi|306482765|gb|ADM89636.1| tRNA modification GTPase mnmE (trmE) [Candidatus Zinderia
           insecticola CARI]
          Length = 455

 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 186/355 (52%), Gaps = 18/355 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGR 59
           M + K +I A+ST      I IIR+SG   F + E +C KK K    + S   +F     
Sbjct: 1   MKYFKNSIIALSTPNGIGGIGIIRISGNKIFNILEKLCNKKVKNLKPRHSYYTYFKNKEE 60

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE---LAKMPNLRLANPGEFSRR 116
           ILD G+LI + SP S+TGE+  E   H    ++N I+     L     L++A  GEF++R
Sbjct: 61  ILDYGILIYYNSPFSYTGENIIEIQCHSNPIIINKIINTCLFLGSNSKLKIAKRGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF N KI+L++ +S+ DLI+S   +  ++ +              ++K+  +R  IE+++
Sbjct: 121 AFLNKKINLIQVKSIIDLINSSNYLSNKIFLNFYCNNFKKKIKYILNKIIKLRIIIESNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
            F   +   N + K++ N +  +K  I   + +        N   I+I+G +N GKSSL 
Sbjct: 181 IFLNNK--LNINIKKIYNYLYIIKKSIKKLLFKINNNNNNNNL-NIIIIGRTNMGKSSLM 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLE 295
           N L+K  V+IVT I GTT D +   +  +  L+ + DTAGI ++  + +E+  IK+++ E
Sbjct: 238 NILSKSKVSIVTSISGTTIDKIKNSIFFKNNLINLIDTAGIKKKIYNKIERISIKKSWKE 297

Query: 296 VENADLILLLKEINS---KKEI----SFPKNIDFIFIGTKSDL--YSTYTEEYDH 341
           ++ +++IL L E      KK+       PK    IFIG K DL  Y  + +++++
Sbjct: 298 IKKSNIILYLFESYKGLLKKDYYIINKLPKK-KIIFIGNKIDLIKYKPFIKKFNN 351


>gi|255521612|ref|ZP_05388849.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-175]
          Length = 301

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 156/288 (54%), Gaps = 21/288 (7%)

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           +E ++D+ E +DV+  + + +L     ++  +   +     G+I+R G    I+G  N G
Sbjct: 16  VEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVG 75

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL N L +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R
Sbjct: 76  KSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVER 135

Query: 292 TFLEVENADLILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYS----TYTEEY 339
           +   + +AD ILL+  +N  +E++             +++ +  K+DL +        E 
Sbjct: 136 SRKALADADFILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVREL 193

Query: 340 ---DHLISS--FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              + ++S+     EGLE L   IK++  +        +  S+ RH+  L Q +  L   
Sbjct: 194 AGENPIVSTSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGV 253

Query: 394 SLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   +    +DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 254 TTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 301


>gi|237756915|ref|ZP_04585387.1| probable tRNA modification GTPase TrmE [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237690916|gb|EEP60052.1| probable tRNA modification GTPase TrmE [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 157

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/152 (45%), Positives = 98/152 (64%), Gaps = 2/152 (1%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDK 63
           K+TI A +T  +PSAISI+R+SG    ++ + I    +K  PRK      F   G I+D+
Sbjct: 3   KDTIVANATPLIPSAISIVRISGDKALEIGKKIFSLPEKITPRKVYFGKIFNHKGEIIDE 62

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GL + F  P+SFTGED  E + HG + VV  ILE    M   RLA PGEF+ RAF NGKI
Sbjct: 63  GLFVYFQKPKSFTGEDLVEIYPHGSVPVVKSILEACF-MHGARLARPGEFTERAFLNGKI 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELS 155
           DLL+AE++ADLI++++E   ++++  + G+LS
Sbjct: 122 DLLQAEAIADLINAKSEKAAKIAVSILEGKLS 153


>gi|23009194|ref|ZP_00050334.1| COG0486: Predicted GTPase [Magnetospirillum magnetotacticum MS-1]
          Length = 141

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/139 (46%), Positives = 87/139 (62%), Gaps = 1/139 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI+A+++ A  S +++ RLSG         +  +  P PRKA         G ++D GL
Sbjct: 3   ETIYALASAAGRSGVAVWRLSGEGSAAALTALTGQLLPEPRKAVRARLRDGIGEVIDDGL 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP+P SFTGED AE H+HGG AV   +   L ++  LR A PGEFSRRAF NGK+DL
Sbjct: 63  VLWFPAPHSFTGEDVAELHLHGGRAVAAALTARLGEL-GLRPAEPGEFSRRAFLNGKLDL 121

Query: 126 LEAESLADLISSETEMQRR 144
             AE++ADL+ +ET  QRR
Sbjct: 122 TRAEAIADLVDAETSAQRR 140


>gi|302421188|ref|XP_003008424.1| tRNA modification GTPase GTPBP3 [Verticillium albo-atrum VaMs.102]
 gi|261351570|gb|EEY13998.1| tRNA modification GTPase GTPBP3 [Verticillium albo-atrum VaMs.102]
          Length = 421

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 206/471 (43%), Gaps = 100/471 (21%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDG----R 59
           ++TI+A+ST    + I++IR+SGP+C  +   +C  +  P PR+A++R  +         
Sbjct: 11  EDTIYALSTAPGRAGIAVIRISGPACLDIYRQLCPSRALPPPRQATVRTLYDPSAPPTAN 70

Query: 60  ILDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +LD   LI+ F  P + TG+D  E HVHGG A V  +L   A +P  R A+      R  
Sbjct: 71  VLDPSALILYFAGPRTVTGDDVLELHVHGGQATVKAVL---AAIP--RCASASVAVVRYA 125

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           E G                  E  RR                         +F+   LD 
Sbjct: 126 EPG------------------EFTRR-------------------------AFLNDRLDL 142

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG---KLGEII-----RNGYKIVILGHSNA 230
           ++ E          L D L    +      QG   + G        R+G +I +LG  N 
Sbjct: 143 TQVES---------LGDTLAADTEQQRWRRQGLIWRPGRTYEDGARRSGIRIALLGPPNV 193

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI------- 283
           GKSSL N +  ++ +IV+   GTTRD++   LD+ G+L   +DTAG R    +       
Sbjct: 194 GKSSLMNLVIGREASIVSGEAGTTRDIVEASLDIRGFLCLFADTAGFRGEASLESGGSVG 253

Query: 284 -VEKEGIKRTFLEVENADLILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEY 339
            VE+EGI+R   +  ++ ++++L  +    +   I +      +    ++ + S   +  
Sbjct: 254 AVEREGIRRAKQKALDSHIVVVLAAVEPTPDGHAIVYDAETVELAAQAQAAISSEAQDAT 313

Query: 340 DHLISSFTGE-GLEELINKIKSILSNKFKKLP------FSIPSHKRHLYHLSQTVRYLE- 391
                S T   G++  I+ +  +  +    LP        + + +R L  L Q   +L+ 
Sbjct: 314 SRGTHSTTSNGGVDTFIDTLAGLFGD-MTSLPVEMQDMLGVTARQRQL--LDQCGAWLDE 370

Query: 392 -MA---SLNEKDCGLDIIAENLRLASVSLGKITG---CVDVEQLLDIIFSK 435
            MA   + +++D  + + AE+LR A+  L KITG     DVE++L +IF K
Sbjct: 371 YMAIAEAGDQQDPDVVLAAEHLRYAAECLAKITGRGEGGDVEEVLGVIFEK 421


>gi|301168598|emb|CBW28188.1| putative tRNA modification GTPase [Bacteriovorax marinus SJ]
          Length = 514

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 149/298 (50%), Gaps = 15/298 (5%)

Query: 3   HEKETIFAVSTGALP-SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI- 60
           ++   I A STG    SAI +IR+SG S   + +   K      +     +   +DG I 
Sbjct: 5   YDDRPIIACSTGLQSNSAIGLIRISGFSDLSIFQDFFKIDLANVKARYSHFTSIIDGDIT 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ +L  + +P S+ GE+  E  VHG    +  I+        +R A  GEFS RA +N
Sbjct: 65  LDEIVLTFYSAPNSYNGENILELGVHGNQINIQRIISLFINSKLVRAAKEGEFSYRALKN 124

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+ L + E L  L+++ +       ++ +SG+L   Y    D    ++S +E  +DFSE
Sbjct: 125 KKLTLSQVEGLDLLLNANSSFMLDQGLQVLSGDLHKQYLSLHDSFLKLKSSVEISIDFSE 184

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHIS------QGKLGEIIRNGYKIVILGHSNAGKSS 234
             DV       +L + L    + SS ++      Q    ++      +V  G +NAGKS+
Sbjct: 185 --DVGEEQCAILLKESLL---EFSSRVTSLWRRVQSDRSDLANPSVSLV--GQTNAGKST 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           LFN L   D +IV+D  GTTRD ++  L + G   ++ DTAG+RET+D +EK GI R 
Sbjct: 238 LFNYLLANDRSIVSDQAGTTRDYVSEYLTISGNTYRLVDTAGLRETEDNIEKIGIDRA 295



 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 354 LINKIKSILSNKFKKL----PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           LI  I+ ++S+KF  L    P  I  H+  + ++  +++  E  SL E    + II+  L
Sbjct: 426 LITYIEGLISHKFNDLCSDNPLLIGRHRECINNIYLSLQ--EFQSLTENVEDIAIISSEL 483

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    + ++ G V  + +L+ IF+ FCIGK
Sbjct: 484 NILEAKVSELLGIVSPDDVLNNIFTNFCIGK 514


>gi|312601166|gb|ADQ90421.1| tRNA modification GTPase mnmE [Mycoplasma hyopneumoniae 168]
          Length = 255

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/233 (37%), Positives = 132/233 (56%), Gaps = 9/233 (3%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +I  G K  ++G  N+GKSSL N L  ++ AI+++IPGTTRDV+  +  L+G L K+ DT
Sbjct: 25  LIYQGIKTCLVGAPNSGKSSLLNILINENKAIISEIPGTTRDVVEGNFVLDGLLFKLFDT 84

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------KEISFPKNIDFIFIGT 327
           AGIR+T + +E+ GI++++  ++ ADLIL + + + K       K  + P  I ++ I  
Sbjct: 85  AGIRKTTEKIEQIGIEKSYESIKKADLILHIIDASEKNRQNLDLKAKARPDQI-YLKIYN 143

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
           KSDL     E  D ++ S   + +E L+ KIKSI +   K   F   S +     L + +
Sbjct: 144 KSDLLENQEEFKDEILISAKYQKIENLLEKIKSIFAFLGKNKEFVANSFQISQIELGK-L 202

Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L+  +  E   G +I   +LR+A   L  I G VD E LLD IFSKFC+GK
Sbjct: 203 AILDAKTSLESGFGPEIAIVDLRIAWKELKTIFGRVDDENLLDSIFSKFCLGK 255


>gi|269468660|gb|EEZ80300.1| GTPase [uncultured SUP05 cluster bacterium]
          Length = 229

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/233 (37%), Positives = 129/233 (55%), Gaps = 18/233 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +VI G  NAGKSSL NAL ++  AIVTDI GTTRDVL   + + G  + I DTAG+  ++
Sbjct: 1   MVIAGKPNAGKSSLLNALTQRSSAIVTDIAGTTRDVLKETIHVNGMPLNIIDTAGLHVSE 60

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSDLYSTYT 336
           D +E+EGIKR   E+E AD++L++ +   K+       +  K+   + I  K DL S  T
Sbjct: 61  DKIEQEGIKRAHGEIERADVVLMVFDAQDKEPDLSILPAVVKDKPLLLIKNKVDLTSEST 120

Query: 337 ------EEYDHLISSFTGEGLEELINKIKSI--LSNKFKKLPFSIPSHKRHLYHLSQTVR 388
                      L+ +   +GL+ L  ++  I  LS+  + +     + KRH+  L   ++
Sbjct: 121 GMSKVNGRTQILLCAKRADGLDLLRQELSDIAGLSDTGEGVLL---ARKRHIVALESALK 177

Query: 389 YLEMASLNEKDCGL-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  A L + D G  +++AE+LR A  SLG ITG    + LL  IFS FCIGK
Sbjct: 178 SIHSA-LEQLDNGASELVAEDLRQAGQSLGSITGEFSSDDLLGEIFSSFCIGK 229


>gi|270690959|ref|ZP_06222897.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
 gi|270316102|gb|EFA28108.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
          Length = 155

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 93/151 (61%), Gaps = 1/151 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I  K  P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELS 155
           L +AE++ADLI + +E   R +++ + GE S
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFS 151


>gi|218281199|ref|ZP_03487723.1| hypothetical protein EUBIFOR_00286 [Eubacterium biforme DSM 3989]
 gi|218217587|gb|EEC91125.1| hypothetical protein EUBIFOR_00286 [Eubacterium biforme DSM 3989]
          Length = 283

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 162/290 (55%), Gaps = 19/290 (6%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND----ISSHISQGKLGEIIR 217
           ID L  I + IE ++D+ E EDV+  ++    ND+L   ND    I   +S+ + G++++
Sbjct: 2   IDDLMDIIAQIEVNIDYPEYEDVEQLTT----NDLLPKTNDWLEKIDHILSRVQTGQMLK 57

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G   +I+G  N GKSSL NAL ++D AIVTDI GTTRD++   + +    + + DTAGI
Sbjct: 58  KGIDTIIVGKPNVGKSSLLNALLEEDKAIVTDIAGTTRDLVEGQIHIGSVQLNLIDTAGI 117

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDL 331
           RE++D +E+ GI+++  ++++A L+LL+    KE++   K+ +   K+   + I  K D 
Sbjct: 118 RESNDKIEQIGIEKSQEKLKDAKLVLLVFDGSKELDEEDKQLLELTKDKMRLIIYNKLDK 177

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL 390
                   D +  S + + ++ LI+ ++++  N   K+ P      +  L +L++     
Sbjct: 178 AEANK---DGIWISASNKEIQPLIDALENLYQNDLLKEDPLLSNERQIGLLNLAKEDMLR 234

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              ++N +    D+I  +++ A   L +I G V  E LLD +FSKFC+GK
Sbjct: 235 AKEAMN-RMVEPDLIEIDIQAAHDHLKEILGEVHREDLLDTLFSKFCLGK 283


>gi|296005027|ref|XP_002808852.1| GTPase, putative [Plasmodium falciparum 3D7]
 gi|225632248|emb|CAX64129.1| GTPase, putative [Plasmodium falciparum 3D7]
          Length = 830

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 194/443 (43%), Gaps = 122/443 (27%)

Query: 105 LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK 164
           +R +  GEF+RRAFEN K+ LL+ E L +L+  + ++Q+++++  M+G    +Y +  + 
Sbjct: 403 IRESYKGEFTRRAFENNKMSLLQIEGLKELLFCKQKVQKQIALNYMNGYAKDIYLKLKEL 462

Query: 165 LTHIRSFIEADLDFSEE--------EDVQNF---SSKEVLNDILFL--KNDISSHISQGK 211
           L  +  + E  +DF EE        E++QN      +E +N I ++  KN++        
Sbjct: 463 LKELLVYTELKIDFEEEHITSPKEKEEIQNMVLRKIREAINHINYILKKNNV-------- 514

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E I N + I++ G+ N+GKS+L N +   D++IVT+I G+T D++  ++ +      +
Sbjct: 515 --EDISNSFDILLFGNVNSGKSTLMNNICNNDISIVTNIKGSTLDIIQKNIQIFNNSYNL 572

Query: 272 SDTAGIRETDDI------------------------VEKEGIKRT--FLEVENADLILLL 305
            D+AG+ +++ I                        +E  GIK+T  FL+       +LL
Sbjct: 573 CDSAGVIKSEKIKSLNEKNYILYEKKKKKKKNIHKTLESMGIKKTLSFLKNNCISAFVLL 632

Query: 306 KEINSKKEI---------SFPKNID---------------------FIFIGTKSDLYST- 334
              N KKE+         +F   I+                     FIF   K DL ST 
Sbjct: 633 NIKNYKKELINIIKILNHNFKGKINQENNKGELNKNKMTNKIKIPYFIFCLNKCDLVSTC 692

Query: 335 -----------------------YTEEYDHLISSFTGEGL--------EELINKIKSILS 363
                                     +    ISS  G  +        E++I K K +  
Sbjct: 693 KFSKIKRNVKKCLLANLSTHILKRCSKKIFFISSKNGYNIDTLLKYFNEKMIKKRKLLFD 752

Query: 364 NKFKK------LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
            K+        LPF     +RH  +L + + +L     N  +   DII+E ++LA  SL 
Sbjct: 753 KKYSNGNNIMFLPF-----ERHKLYLKKAINHLLFIQKNIHNLTFDIISEEIKLAVNSLN 807

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           +I G +  EQ+L+ I   FCIGK
Sbjct: 808 RIIGTIKNEQILNKILDSFCIGK 830



 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK 42
           +KETI+A+S+G + SAIS+IR+SGP    + E +  K K
Sbjct: 160 DKETIYALSSGNVQSAISVIRISGPLSKMILEILLHKGK 198



 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 46  RKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL 105
           RK  +   +  +  I+D  +   F  P+S+TGE+  E + HG + +V  I+  +  M  L
Sbjct: 278 RKLYMGKLYDKNNDIIDIVMYSYFKEPKSYTGEELVEIYCHGNMLIVKEIMSAINNMNEL 337


>gi|324512672|gb|ADY45241.1| tRNA modification GTPase mnmE [Ascaris suum]
          Length = 308

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 149/302 (49%), Gaps = 35/302 (11%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
           + L  +   +EA +DF++  DV  F     L+ +  + +++     + + G +I +G ++
Sbjct: 18  ESLVQLACSLEAGIDFAD--DVP-FDWDSFLSHVRDVTSELKMIEQRAQKGCLIIDGIRV 74

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           V+LG +N GKSSL N +A++DVAIV+++ GTTRD L   ++L    V  +DTAGIR   D
Sbjct: 75  VMLGQTNVGKSSLLNCIAERDVAIVSEVEGTTRDALEARIELASVPVIFTDTAGIRSAHD 134

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-------------FIFIGTKS 329
            +E E I RT      A   +LL  +++ K +     +D              + +  K 
Sbjct: 135 FLEAESISRTIARAAEAH--VLLPVVDASKCVDIAAEVDVLLRQCHCEDASRVVVVCNKI 192

Query: 330 DLYSTYTEEYDHLISSFTGEGL-EELINK--IKSILSNKFKKLPFSIP--------SHKR 378
           DL   +     H++SS   + +    IN+  I +IL    +++    P        S  R
Sbjct: 193 DLIPAHMH---HVVSSLPWKVVFTSCINRTGITNILEAVKEQIAALCPDEGDDALLSRYR 249

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
               LS  V  LE    +  D  L   AE +R AS  +G+I+G +  E++LD IFS FCI
Sbjct: 250 QRILLSDAVSLLEQVQ-STSDAAL--AAEYVREASALIGEISGAIVNEEILDRIFSSFCI 306

Query: 439 GK 440
           GK
Sbjct: 307 GK 308


>gi|255023683|ref|ZP_05295669.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-208]
          Length = 273

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 146/275 (53%), Gaps = 21/275 (7%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 1   EEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRPNVGKSSLLNQLIQEEK 60

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD ILL
Sbjct: 61  AIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADADFILL 120

Query: 305 LKEINSKKEISFPKNI--------DFIFIGTKSDLYS----TYTEEY---DHLISS--FT 347
           +  +N  +E++             +++ +  K+DL +        E    + ++S+    
Sbjct: 121 V--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETRLDINRVRELAGENPIVSTSLVN 178

Query: 348 GEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
            EGLE L   IK++  +        +  S+ RH+  L Q +  L   +   +    +DI+
Sbjct: 179 DEGLEALEEAIKALFFAGGIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMPVDIV 238

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 239 QIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 273


>gi|94992362|ref|YP_600461.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS2096]
 gi|94545870|gb|ABF35917.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS2096]
          Length = 261

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 139/248 (56%), Gaps = 21/248 (8%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            K G+I+R G    I+G  N GKSSL N L ++D AIVTDI GTTRDV+   ++++G  +
Sbjct: 18  AKRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPL 77

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFI 323
           K+ DTAGIRETDD+VE+ G++R+   ++ ADL+LL+   + K        ++  ++ + I
Sbjct: 78  KLVDTAGIRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSNRI 137

Query: 324 FIGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPS 375
            +  K+DL      E + L      IS  T + +  + ++I  +  +     +   +  S
Sbjct: 138 ILLNKTDLEQKI--ELEQLPADLIPISVLTNQNINLIEDRINQLFFDNAGLVEQDATYLS 195

Query: 376 HKRHLYHLSQTVRYLEMASLNEK---DCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432
           + RH+  + + V+ LE  ++N+       +D++  +L      LG+ITG    ++L+  +
Sbjct: 196 NARHISLIEKAVQSLE--AVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQL 253

Query: 433 FSKFCIGK 440
           FS+FC+GK
Sbjct: 254 FSQFCLGK 261


>gi|94992363|ref|YP_600462.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS2096]
 gi|94545871|gb|ABF35918.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS2096]
          Length = 215

 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 115/194 (59%), Gaps = 7/194 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G  +D 
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSS 189
           +D+ E +DV+  ++
Sbjct: 181 IDYPEYDDVEEMTT 194


>gi|283778508|ref|YP_003369263.1| small GTP-binding protein [Pirellula staleyi DSM 6068]
 gi|283436961|gb|ADB15403.1| small GTP-binding protein [Pirellula staleyi DSM 6068]
          Length = 407

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 156/347 (44%), Gaps = 57/347 (16%)

Query: 74  SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133
           +    D+AE   HGG + V  I + LA+     L +P  +  R+      D L+ +++  
Sbjct: 81  ALVAPDAAEISCHGGRSAVARITQSLARE-GCVLVDPALYVARS----TCDALKLQAMER 135

Query: 134 LISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           L  ++T +     ++   G LSS     ID L              E  DV    ++  +
Sbjct: 136 LTRAKTSLAAAHLLDQTRGALSSAVRYMIDSL--------------ERGDVAG--ARRQI 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
            D+L      + H+++          Y++ I+G  NAGKS+L N L     A+V D PGT
Sbjct: 180 KDLLTTARQ-AIHLTEP---------YRVTIVGRPNAGKSALLNQLVGYARAMVFDQPGT 229

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           TRDV+ +   L GY V+ISDTAG+RET + +E+EGI+RT   +   DL LL+ + ++   
Sbjct: 230 TRDVVQVTTALGGYAVEISDTAGVRETSEPIEREGIERTLASIATCDLALLVFDQSAPLT 289

Query: 314 IS--------FPK-NIDFIFIGTKSDLYSTYTEEYDHLI------------SSFTGEGLE 352
                      P+     I +G KSDL    + E    I            S+ TG G+ 
Sbjct: 290 ADDQAFLAQVLPRLTAALIVVGNKSDLPPQCSFEQLAAINTTIARAPSLSASALTGAGIR 349

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           EL+    ++L  +    P +  S       L Q  R + +A+L++ +
Sbjct: 350 ELL----ALLEKQLVPTPLAQGSPLLFSRELEQAFRQI-LAALDQSN 391


>gi|70944814|ref|XP_742297.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521196|emb|CAH74740.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 529

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 120/523 (22%), Positives = 211/523 (40%), Gaps = 125/523 (23%)

Query: 40  KKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHG----------GI 89
           KK    RK      +     ++D  +   F SP S+TGED  E + HG           I
Sbjct: 10  KKNIESRKLYYSKIYDNSNDVIDNVMYSYFKSPNSYTGEDVVEIYCHGNPFIVKEIMGAI 69

Query: 90  AVVNGILEE-----------------------------LAKMPNLRLANPGEFSRRAFEN 120
             VN IL E                             L     +R +  GEF++RAFEN
Sbjct: 70  EHVNSILYEVINAEKEKIRSRQIMDDDNFDKVGQTLFDLTNFIKIRESKRGEFTQRAFEN 129

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DLL+ E L +L+  + ++Q+++++  ++G   ++Y +  + +  +  +I+  +DF E
Sbjct: 130 NKMDLLQIEGLKELLFCKQKIQKKIALNYLNGYAKNIYLKLRNNIKKLLVYIQLKIDF-E 188

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKL------GEIIRNGYKIVILGHSNAGKSS 234
           +E +     K+ +N  + +K  +++ I   K        E +     ++I G+ NAGKS+
Sbjct: 189 DEHIITKKKKKYIN--MLIKKKVNNAIKNIKTILKRENIESLNTPSNVLIFGNVNAGKST 246

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI----------------R 278
             N +   D++IVT I GTT D++  ++ +        D+AGI                +
Sbjct: 247 FMNYICNSDISIVTKIKGTTIDIIQKNIKIFNNDYNFCDSAGINNLVNTKLEADKDEQHK 306

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN-------------SKKEISFPKNIDFIFI 325
                +E  GIK+T   +E    + +L  IN             ++K ++  K   + F+
Sbjct: 307 NVHKKLESIGIKKTLNFLEKCSSVFVLININNYFNELKNVISLLNRKFMNNAKKTPYFFV 366

Query: 326 G-TKSDLYST------YTEEYDHLISSF-------------------TGEGLEELINKIK 359
              K DL                ++S+F                    G  + +L+    
Sbjct: 367 CINKCDLQQNPEKLLKIKNNVKKMLSNFLNPRIFKKFNKKIFFISSKKGNNINKLLLHFN 426

Query: 360 SILSNKF-------------KKLPFSIPSHKRHLY---------HLSQTVRYLEMASLNE 397
             + NK               K+  ++ S  +++Y         +L +++ +L     N 
Sbjct: 427 KTMVNKQSLHNSTINIDVEKNKIKKNLSSDNKNIYFLPFERHKIYLKESLTHLSFVQKNI 486

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                DIIAE ++LA   L +I G +  EQ+L  I   FCIGK
Sbjct: 487 NLVDFDIIAEEIKLAVKPLHEIIGKISNEQILSNILDTFCIGK 529


>gi|163784025|ref|ZP_02178984.1| tRNA modification GTPase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880710|gb|EDP74255.1| tRNA modification GTPase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 270

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/271 (33%), Positives = 146/271 (53%), Gaps = 14/271 (5%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV+     ++  D+  + N I + +S  K G+++  G K+ I G  N GKSSLFNAL   
Sbjct: 1   DVEEIPLTDIKKDLEAVINQIKNLLSTYKKGKLVTEGIKLAIAGRPNVGKSSLFNALIGY 60

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV++I GTTRD +    ++ G  VK+ DTAGIRE  D +EK GI++T  +++ AD++
Sbjct: 61  ERAIVSEIKGTTRDFIEESFNIHGIPVKLIDTAGIREAGDKIEKIGIEKTKEKIKEADIV 120

Query: 303 LLL---KEINSKKEISFPKNIDF---IFIGTKSD-LYSTYTEEYDH----LISSFTGEGL 351
           L +    E  ++++    ++I     I +  KSD L   Y ++Y        S+ T EG+
Sbjct: 121 LFVFDAYEGLTEEDFKIYEDIKHKSPIIVANKSDLLLDKYEKKYYFKDIIFTSTKTQEGI 180

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENL 409
           +EL NKI + L    +     +  + RH   L ++++ LE    N K+     +I+   +
Sbjct: 181 QELENKILNTLGLT-EDTDSEVYINIRHQTVLEKSLKLLEKIYNNLKNYENFKEILMLEI 239

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R     LG+I G +  E +L  IFS FCIGK
Sbjct: 240 REVKELLGEIIGEITTEDILGNIFSSFCIGK 270


>gi|213022849|ref|ZP_03337296.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 149

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 90/151 (59%), Gaps = 2/151 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +  K  P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMS 151
            K+DL +AE++ADLI + +E   R ++  ++
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLT 149


>gi|302421192|ref|XP_003008426.1| tRNA modification GTPase GTPBP3 [Verticillium albo-atrum VaMs.102]
 gi|261351572|gb|EEY14000.1| tRNA modification GTPase GTPBP3 [Verticillium albo-atrum VaMs.102]
          Length = 202

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 16/173 (9%)

Query: 37  ICKKKK-PFPRKASLRYFFGLDG----RILDKGLLIV-FPSPESFTGEDSAEFHVHGGIA 90
           +C  +  P PR+A++R  +         +LD   LI+ F  P + TG+D  E HVHGG A
Sbjct: 9   LCPSRALPPPRQATVRTLYDPSAPPTANVLDPSALILYFAGPRTVTGDDVLELHVHGGQA 68

Query: 91  VVNGILEELAKMPN-----LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRL 145
            V  +L  + +  +     +R A PGEF+RRAF N ++DL + ESL D ++++TE QR  
Sbjct: 69  TVKAVLAAIPRCASASVAVVRYAEPGEFTRRAFLNDRLDLTQVESLGDTLAADTEQQRLA 128

Query: 146 SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF--SSKEVLNDI 196
           ++ G SG L   Y +W   L   R+ +EA +DFSE+   Q+F  S  E+L ++
Sbjct: 129 AVRGSSGALGRTYEEWRATLLAARAELEALIDFSED---QHFDESPAELLRNV 178


>gi|198274784|ref|ZP_03207316.1| hypothetical protein BACPLE_00943 [Bacteroides plebeius DSM 17135]
 gi|198272231|gb|EDY96500.1| hypothetical protein BACPLE_00943 [Bacteroides plebeius DSM 17135]
          Length = 265

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 133/265 (50%), Gaps = 42/265 (15%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +G  ++NG  + I+G +NAGKS+L NAL  ++ AIV+DI GTTRDV+   ++L G   + 
Sbjct: 7   VGNALKNGVPVAIVGETNAGKSTLLNALLNEERAIVSDIHGTTRDVIEDTMNLGGITFRF 66

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDF 322
            DTAGIRET D +E  GI+R+F +++ AD++L + +    +E         +   KN   
Sbjct: 67  IDTAGIRETTDTIESLGIERSFQKLDQADIVLWVIDATCAEEQYRQLADKILPRCKNKHL 126

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTG-------------------EGLEELINKIKSILS 363
           + +  K+DL S+     D  ++                       EGL +L  ++     
Sbjct: 127 VIVFNKADLLSSADSSADKQLARLKAALPDLPEDACVLSLSAKQKEGLSQLQKQLVD--- 183

Query: 364 NKFKKLP-----FSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSL 416
             F  LP       + S+ RH   LS+ +  +      L  +  G D+++++LR     L
Sbjct: 184 --FAALPDLSQNDVVVSNIRHYEALSRALEAIHRVQDGLAMQLSG-DLVSQDLRECLYHL 240

Query: 417 GKIT-GCVDVEQLLDIIFSKFCIGK 440
           G+I  G ++ +++L  IF  FCIGK
Sbjct: 241 GEIVGGTIETDEVLGNIFKHFCIGK 265


>gi|255017531|ref|ZP_05289657.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL F2-515]
          Length = 158

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 4/157 (2%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSL 157
           G+IDL +AE++ DLI ++T+    +++  M G LS L
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRL 157


>gi|159162931|pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
           Protein
          Length = 172

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 92/165 (55%), Gaps = 17/165 (10%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL   + ++G  + I 
Sbjct: 1   GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHII 60

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNID 321
           DTAG+RE  D VE+ GI+R + E+E AD +L + +  +   +             P  + 
Sbjct: 61  DTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP 120

Query: 322 FIFIGTKSDLYST---YTEEYDHL---ISSFTGEGLEELINKIKS 360
              +  K+D+       +E   H    +S+ TGEG++ L N +K 
Sbjct: 121 ITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQ 165


>gi|121591475|ref|ZP_01678748.1| probable tRNA modification GTPase TrmE [Vibrio cholerae 2740-80]
 gi|121546677|gb|EAX56859.1| probable tRNA modification GTPase TrmE [Vibrio cholerae 2740-80]
          Length = 158

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 80/129 (62%)

Query: 45  PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN 104
           PR A    F   DG+ LD+G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  
Sbjct: 28  PRYAEYLPFTDEDGQQLDQGIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKG 87

Query: 105 LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK 164
           +R A PGEFS RAF N K+DL +AE++ADLI + +E   + +++ + GE S      ++ 
Sbjct: 88  VRPARPGEFSERAFLNDKMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVES 147

Query: 165 LTHIRSFIE 173
           L H+R +++
Sbjct: 148 LIHLRIYVK 156


>gi|221053584|ref|XP_002258166.1| GTPase [Plasmodium knowlesi strain H]
 gi|193807999|emb|CAQ38703.1| GTPase, putative [Plasmodium knowlesi strain H]
          Length = 765

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 169/394 (42%), Gaps = 103/394 (26%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEF------------IC---------- 38
           M  E +TI+A+S+G   SAI+++R+SG     V E             IC          
Sbjct: 138 MLSEGDTIYALSSGRDVSAIAVVRMSGSLSRIVLEVLLHGGENHIGNKICGEGNSEFSPE 197

Query: 39  ---------KKKKPFP-------------RKASLRYFFGLDGRILDKGLLIVFPSPESFT 76
                    KKK  +              RK      +      +D+ +   F  P+S+T
Sbjct: 198 EPPPDIPAGKKKTEYSLDQVIKLRKDFEERKMYHGEIYSNSNEPIDQIMYTFFKGPKSYT 257

Query: 77  GEDSAEFHVHGGIAVVNGILEELAKMPNL------------------------------- 105
           GED  E + HG   +VN I++E+ K+  L                               
Sbjct: 258 GEDIVEIYCHGSPLIVNEIMDEIEKLNTLFSNLLKTEKQKYYSQNDKKENFTCTCSEEIW 317

Query: 106 ---------------RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM 150
                          RL+  GEF+RR+F NGK++LL+ E L +L+  + + Q+++++  +
Sbjct: 318 NKLLTPRNDFFFNKIRLSMKGEFTRRSFLNGKMNLLQVEGLKELLWCKKKEQKKVALNYL 377

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI-----LFLKNDISS 205
            G+  ++Y    + +  +  + +  +D  +E    + SSKE   +I     L L+N I S
Sbjct: 378 KGQARNVYVTLRNNMKKLLLYTQVKIDLEDE----HLSSKEERTNINQFIKLHLENVIES 433

Query: 206 --HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
              I      E + N   +++ G  N+GKS+L N +   DV+IVT I G+T DV+   + 
Sbjct: 434 IRKILMKPNVEDLSNPLDVLLFGQVNSGKSTLMNRICGSDVSIVTRIKGSTIDVVQKGVS 493

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           + G      D+AG+  +  ++ +E ++R +  V+
Sbjct: 494 IGGRSYNFCDSAGV--STHVLREEFLRRDYPNVD 525



 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           EG  E  N  ++I S  F  LPF     +RH  HL + +++L     +      DIIAE 
Sbjct: 681 EGKNEEENTGENIHSPTF--LPF-----ERHKTHLRRALKHLLFIKRHRHLLTFDIIAEE 733

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++LA  +L  I G     ++L+ I   FC+GK
Sbjct: 734 IKLAVKALNGIIGGFSQAKILNEILDSFCVGK 765


>gi|260890873|ref|ZP_05902136.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254]
 gi|260859426|gb|EEX73926.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254]
          Length = 214

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 99/179 (55%), Gaps = 4/179 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDG-RILD 62
           +TI A+ST      I+IIR+SG   F++ + I  KK P        L Y F  DG +I+D
Sbjct: 4   DTIAAISTPKGEGGIAIIRISGDKSFEILDKIFIKKNPNADLGFYKLNYGFIKDGEKIVD 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + + +   +P+S+T ED  E + HGG  V   +LE L      R A  GEF++RAF NG+
Sbjct: 64  EAMAVRLKAPKSYTCEDIVEINCHGGTLVSEKVLE-LVLRNGARHAESGEFTKRAFMNGR 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           IDL +AE++ D+I  +TE    LS++ + G+L     ++   L  I + +   LD+ EE
Sbjct: 123 IDLSQAEAVMDIIQGKTEKSVSLSLDQLRGDLRDKVNEFKKALLDITAHVNVVLDYPEE 181


>gi|156097935|ref|XP_001615000.1| tRNA modification GTPase trmE [Plasmodium vivax SaI-1]
 gi|148803874|gb|EDL45273.1| tRNA modification GTPase trmE, putative [Plasmodium vivax]
          Length = 761

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 131/273 (47%), Gaps = 62/273 (22%)

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL--------------- 105
           +D+ +   F SP+S+TGED  E + HG   +VN I+EE+ K+ +L               
Sbjct: 228 IDQVVYSFFKSPKSYTGEDVVEIYCHGSPLIVNEIMEEIEKLNSLFANILKSEKEKYFLS 287

Query: 106 --------------------------------RLANPGEFSRRAFENGKIDLLEAESLAD 133
                                           R +  GEF+RRAF+NGK++LL+ E L +
Sbjct: 288 QIGKNDNFTCTCSEEIWNKLVNTRNDAFFSKIRPSRRGEFTRRAFQNGKMNLLQVEGLKE 347

Query: 134 LISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           L+    + Q+++++  ++G+   +Y    + +  +  + +  +D  +E    + SS E  
Sbjct: 348 LLWCSKKEQKKIALNYLNGKAKKIYATLRNDMKKLLLYTQVKIDLEDE----HLSSDEER 403

Query: 194 NDI-LFLKNDISSHISQGKLGEIIRN--------GYKIVILGHSNAGKSSLFNALAKKDV 244
           + I  F++  +S+ I  G + +I+R            +++ G  N+GKS+L N + + DV
Sbjct: 404 SSINRFIQRHLSNAI--GSIRKILRQPNVEDLSTPLDVLLFGQVNSGKSTLMNRICRSDV 461

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +IVT I G+T DV+   + +EG      D+AG+
Sbjct: 462 SIVTRIQGSTIDVVQKGVTVEGRPYNFCDSAGV 494



 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428
           LPF     +RH  HL + +++L     +      DIIAE LRLA  +L  I G     ++
Sbjct: 695 LPF-----ERHKTHLRRALKHLLFIKRHRHLLTFDIIAEELRLAVAALNAIIGGFSQARI 749

Query: 429 LDIIFSKFCIGK 440
           L+ I   FC+GK
Sbjct: 750 LNEILETFCVGK 761


>gi|237756509|ref|ZP_04585039.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691325|gb|EEP60403.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 267

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 140/261 (53%), Gaps = 27/261 (10%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +K+ I   ++  K G +I+ G K+ I+G  N GKSSLFNAL   + AIV++I GTTRD +
Sbjct: 15  VKSQIEKLLASYKKGNLIKEGIKLAIVGRPNVGKSSLFNALVGYERAIVSEIQGTTRDFI 74

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS------KK 312
              L ++   V + DTAG+R+T+D +EK GI++   ++  AD+IL + + +S      KK
Sbjct: 75  EESLKIKDIPVILLDTAGLRDTEDKIEKIGIEKAQEKINEADIILFVIDASSGFTEEDKK 134

Query: 313 EISFPKNIDFIFIGTKSDLYST---YTEEYDHLI--SSFTGEGLEELINKIKSIL----- 362
                K+   I +  KSDL +    + E+YD+++  S    +G++EL  KI + L     
Sbjct: 135 IYDKIKDKPHITVVNKSDLNNKPIDFFEKYDNIVYTSVVNNQGIKELEEKIITSLGIIEK 194

Query: 363 -SNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
             + F  L  S  +   K  +  +   + YL    +N K+  +  I E L      L ++
Sbjct: 195 EDDLFINLRQSTLLKQAKEKIEEIENHINYL----INNKEILMIYIQEALNY----LDEV 246

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
            G +  E +LD IFSKFCIGK
Sbjct: 247 VGAISTEDVLDNIFSKFCIGK 267


>gi|325116750|emb|CBZ52303.1| tRNA modification GTPase TrmE, related [Neospora caninum Liverpool]
          Length = 852

 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 99  LAKMPNLRLANPGEFSRRAFENGKIDLLE-AESLADLISSETEMQRRLSMEGM---SGEL 154
           L ++  LRLA  GEF+ RA+ NGKI+ ++  E+LADL++++T  Q RL++  +     E+
Sbjct: 219 LREVGELRLAEAGEFTFRAYLNGKIETVQQVEALADLVNADTVAQHRLAVRRLRRQPREV 278

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF------SSKEVLNDILFLKNDISSHIS 208
            +L   W   L    +F EA L+  ++    +        + +    +  L  +I  H+ 
Sbjct: 279 HALLDNWRGLLQEALAFSEAALEIGDDAQEADAEAAQEAGATKAEARVRRLLREIRLHLE 338

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
            G    ++ +G K+V  G +NAGKS+LFN+L  +D AIV+ + GTTRDVLT  + L G  
Sbjct: 339 LGLREALVHSGVKVVFCGPTNAGKSTLFNSLVGRDAAIVSPLAGTTRDVLTWPVQLRGAK 398

Query: 269 VKISDTAGIR 278
           + ++DTAG+R
Sbjct: 399 LLLTDTAGLR 408


>gi|270717108|ref|ZP_06223233.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
 gi|270315556|gb|EFA27772.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
          Length = 155

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 69/98 (70%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           S+ K G I+R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL   + ++G 
Sbjct: 25  SEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM 84

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            + I DTAG+R+  D VE+ GI R + E+E AD I+L+
Sbjct: 85  PLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIILM 122


>gi|121591728|ref|ZP_01678946.1| probable tRNA modification GTPase TrmE [Vibrio cholerae 2740-80]
 gi|121546410|gb|EAX56653.1| probable tRNA modification GTPase TrmE [Vibrio cholerae 2740-80]
          Length = 221

 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 19/222 (8%)

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL+ K+ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+
Sbjct: 1   NALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEI 60

Query: 297 ENADLILLL-----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYD 340
             AD +L +      E    ++I        P+NI    I  K+D     L   +  +  
Sbjct: 61  RQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPT 120

Query: 341 HL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
            + +S+ TG+G++ L   +K  +     +      + +RHL  L +   +L +     E 
Sbjct: 121 LIRLSAKTGQGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEG 179

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +I+AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 180 YMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 221


>gi|110590301|pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And Rb+
 gi|110590302|pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And Rb+
 gi|110590303|pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And Rb+
 gi|110590304|pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And Rb+
 gi|110590305|pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And Nh4+
 gi|110590306|pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And Nh4+
          Length = 172

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 89/160 (55%), Gaps = 17/160 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL   + ++G  + I DTAG+
Sbjct: 3   HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 62

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNIDFIFIG 326
           RE  D VE+ GI+R + E+E AD +L + +  +   +             P  +    + 
Sbjct: 63  REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR 122

Query: 327 TKSDLYS---TYTEEYDHL---ISSFTGEGLEELINKIKS 360
            K+D+       +E   H    +S+ TGEG++ L N +K 
Sbjct: 123 NKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQ 162


>gi|32474218|ref|NP_867212.1| tRNA modification GTPase [Rhodopirellula baltica SH 1]
 gi|32444756|emb|CAD74757.1| probable tRNA modification GTPase [Rhodopirellula baltica SH 1]
          Length = 426

 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 180/423 (42%), Gaps = 57/423 (13%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGP---SCFQVCEFICKKKKPFPRKASLRYFFGL- 56
           M    ET     TG   SA+++I L GP    C Q C               +RY     
Sbjct: 23  MTSTNETTATRLTGVGLSAVAVIGLRGPRALQCVQDCFTPATNASSSLSAGQVRYGTWKS 82

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             DG     G  IV  +P +   + S E H HGG A V+ IL  L      R     E S
Sbjct: 83  SDDG----PGESIVL-TPMT---DGSFEIHGHGGEAAVSAILASLTD----RGVESVESS 130

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
               ++  I L EAE +  L    T  Q  ++++   G+L+     W+ ++  + S  E 
Sbjct: 131 TWQ-KSAPILLSEAEHV--LQRCVTSQQAAVALDQTRGQLAQWGQHWLQRIDEVSSSDE- 186

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
               SEE +          + +  L  D  +  + G+ G  +    ++V+ G  N GKSS
Sbjct: 187 ---LSEETE----------SLLAALCKDAQTIAANGERGVRLTEPRRLVLAGPPNVGKSS 233

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI------VEKEG 288
           L N +     +I  D  GTTRDVL  D  + G  V++SDTAGIRET  +      +E+EG
Sbjct: 234 LMNQIVGFRRSITHDSAGTTRDVLQCDTVIAGVPVRMSDTAGIRETSHLTESSVAIEREG 293

Query: 289 IKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYSTYTE---- 337
           I+R  + VE+ADL+L++ + ++       ++ +        + +  K+DL S   +    
Sbjct: 294 IRRASVAVESADLLLIVCQPSTLIDLQDFRRSLPVSNKTHVVEVLNKADLLSDNAKSIAN 353

Query: 338 --EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL---YHLSQTVRYLEM 392
             E+  + S     G+ +L+  + + L+         +P  +R L     L QT      
Sbjct: 354 EIEHQTIASEDDDPGVGKLMKTLAAHLTATLPPRHSPVPICQRQLELTNQLCQTTSLKNA 413

Query: 393 ASL 395
           A++
Sbjct: 414 ATM 416


>gi|221483862|gb|EEE22166.1| GTPase mss1/trme, putative [Toxoplasma gondii GT1]
          Length = 981

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 109/194 (56%), Gaps = 10/194 (5%)

Query: 99  LAKMPNLRLANPGEFSRRAFENGKID-LLEAESLADLISSETEMQRRLSMEGMSGELSS- 156
           L+ + +LR A  GEF+ RAF NGKI+ + + E+LADL++++T  Q RL++  +       
Sbjct: 373 LSSVGDLRPAEAGEFTLRAFLNGKIESVQQVEALADLLNADTVAQHRLALRRLRRHPREL 432

Query: 157 --LYGQWIDKLTHIRSFIEADL---DFSEEEDVQ---NFSSKEVLNDILFLKNDISSHIS 208
             L  +W   L    +F EA L   D ++E D +      +++    +  L  ++   + 
Sbjct: 433 RDLLERWRKLLQEALAFSEAALEIGDDAQEADAELARACGAQDAEKRVRRLLQELRCQLE 492

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
            G    +++ G  +V  G +NAGKS+LFN+L  +D AIV+ I GTTRDVLT  + L G  
Sbjct: 493 LGMRDALVQTGVTVVFCGPTNAGKSTLFNSLVGRDTAIVSPIAGTTRDVLTAPIQLSGSK 552

Query: 269 VKISDTAGIRETDD 282
           V ++DTAG+R   D
Sbjct: 553 VLLTDTAGLRPARD 566


>gi|255522653|ref|ZP_05389890.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-175]
          Length = 146

 Score = 99.8 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 57/140 (40%), Positives = 84/140 (60%), Gaps = 4/140 (2%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETE 140
           G+IDL +AE++ DLI ++T+
Sbjct: 121 GRIDLSQAEAVMDLIRAKTD 140


>gi|237836819|ref|XP_002367707.1| hypothetical protein TGME49_004350 [Toxoplasma gondii ME49]
 gi|211965371|gb|EEB00567.1| hypothetical protein TGME49_004350 [Toxoplasma gondii ME49]
          Length = 990

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 109/194 (56%), Gaps = 10/194 (5%)

Query: 99  LAKMPNLRLANPGEFSRRAFENGKID-LLEAESLADLISSETEMQRRLSMEGMSGELSS- 156
           L+ + +LR A  GEF+ RAF NGKI+ + + E+LADL++++T  Q RL++  +       
Sbjct: 382 LSSVGDLRPAEAGEFTLRAFLNGKIESVQQVEALADLLNADTVAQHRLALRRLRRHPREL 441

Query: 157 --LYGQWIDKLTHIRSFIEADL---DFSEEEDVQ---NFSSKEVLNDILFLKNDISSHIS 208
             L  +W   L    +F EA L   D ++E D +      +++    +  L  ++   + 
Sbjct: 442 RDLLERWRKLLQEALAFSEAALEIGDDAQEADAELARACGAQDAEKRVRRLLQELRCQLE 501

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
            G    +++ G  +V  G +NAGKS+LFN+L  +D AIV+ I GTTRDVLT  + L G  
Sbjct: 502 LGMRDALVQTGVTVVFCGPTNAGKSTLFNSLVGRDTAIVSPIAGTTRDVLTAPIQLSGSK 561

Query: 269 VKISDTAGIRETDD 282
           V ++DTAG+R   D
Sbjct: 562 VLLTDTAGLRPARD 575


>gi|167947905|ref|ZP_02534979.1| tRNA modification GTPase TrmE [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 118

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/109 (47%), Positives = 72/109 (66%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           ND+  L   ++  I     G ++R+G  +VI G  NAGKSSL N L+ ++ AIVTDIPGT
Sbjct: 6   NDLKTLTEQLAQLIQSANTGRLLRDGMTLVIAGRPNAGKSSLLNQLSGEERAIVTDIPGT 65

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           TRD+L   + ++G  + I DTAGIR+++D VE EGI+R   E+E AD I
Sbjct: 66  TRDLLREQIQIDGLPLHIIDTAGIRDSEDPVEIEGIRRARQEIEQADRI 114


>gi|221505148|gb|EEE30802.1| GTP-binding protein enga, putative [Toxoplasma gondii VEG]
          Length = 990

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 109/194 (56%), Gaps = 10/194 (5%)

Query: 99  LAKMPNLRLANPGEFSRRAFENGKID-LLEAESLADLISSETEMQRRLSMEGMSGELSS- 156
           L+ + +LR A  GEF+ RAF NGKI+ + + E+LADL++++T  Q RL++  +       
Sbjct: 382 LSSVGDLRPAEAGEFTLRAFLNGKIESVQQVEALADLLNADTVAQHRLALRRLRRHPREL 441

Query: 157 --LYGQWIDKLTHIRSFIEADL---DFSEEEDVQ---NFSSKEVLNDILFLKNDISSHIS 208
             L  +W   L    +F EA L   D ++E D +      +++    +  L  ++   + 
Sbjct: 442 RDLLERWRKLLQEALAFSEAALEIGDDAQEADAELARACGAQDAEKRVRRLLQELRCQLE 501

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
            G    +++ G  +V  G +NAGKS+LFN+L  +D AIV+ I GTTRDVLT  + L G  
Sbjct: 502 LGMRDALVQTGVTVVFCGPTNAGKSTLFNSLVGRDTAIVSPIAGTTRDVLTAPIQLSGSK 561

Query: 269 VKISDTAGIRETDD 282
           V ++DTAG+R   D
Sbjct: 562 VLLTDTAGLRPARD 575


>gi|110590297|pdb|2GJ8|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And K+
 gi|110590298|pdb|2GJ8|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And K+
 gi|110590299|pdb|2GJ8|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And K+
 gi|110590300|pdb|2GJ8|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And K+
          Length = 172

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 88/159 (55%), Gaps = 17/159 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL   + ++G  + I DTAG+
Sbjct: 3   HGXKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGL 62

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNIDFIFIG 326
           RE  D VE+ GI+R + E+E AD +L   +  +   +             P  +    + 
Sbjct: 63  REASDEVERIGIERAWQEIEQADRVLFXVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR 122

Query: 327 TKSDLYSTY---TEEYDHL---ISSFTGEGLEELINKIK 359
            K+D+       +E   H    +S+ TGEG++ L N +K
Sbjct: 123 NKADITGETLGXSEVNGHALIRLSARTGEGVDVLRNHLK 161


>gi|87308881|ref|ZP_01091020.1| tRNA modification GTPase TrmE [Blastopirellula marina DSM 3645]
 gi|87288592|gb|EAQ80487.1| tRNA modification GTPase TrmE [Blastopirellula marina DSM 3645]
          Length = 383

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 132/295 (44%), Gaps = 37/295 (12%)

Query: 74  SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133
           S TG +  E H HGG+A    IL  L +    R     E++ R  E          +LA 
Sbjct: 73  SRTGPERLEVHCHGGVAASRRILNHL-QAAGCREIAWTEYAERT-EAAPTIAAARIALAR 130

Query: 134 LISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
             +S T                 L  Q+   L    + I A LD  E  D Q        
Sbjct: 131 ARTSRTAAH--------------LLDQYNGALQSELASIAALLDSQETSDAQ-------- 168

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
                L+  I++ ++  + G  +   +K+VI G  N GKSSL NAL   + AIV D PGT
Sbjct: 169 -----LR--ITALLATARFGLHLTRPWKVVIAGRPNVGKSSLINALVGYERAIVFDQPGT 221

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--- 310
           TRD +T     +G+ V+++DTAG+RE+DD +E+EG+ R       ADLILL  + ++   
Sbjct: 222 TRDAVTAAAAFDGWPVELADTAGLRESDDAIEREGVSRARQLQSEADLILLAFDASAAWT 281

Query: 311 -KKEISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
            + +     + D I +  K DL   S+        +S+  G+G+  LI  I   L
Sbjct: 282 DEDQQLVDAHPDAIIVHNKCDLPISSSGHRPAGLKVSAQRGDGIALLIETIGHAL 336


>gi|320102486|ref|YP_004178077.1| small GTP-binding protein [Isosphaera pallida ATCC 43644]
 gi|319749768|gb|ADV61528.1| small GTP-binding protein [Isosphaera pallida ATCC 43644]
          Length = 404

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 144/324 (44%), Gaps = 54/324 (16%)

Query: 82  EFHVHGGIAV---VNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           EF  HGG+A    V  ILE     P      P    R   E   +  ++A++  DL  + 
Sbjct: 113 EFQGHGGLAARQAVEAILEAAGSRPV-----PARVWR--IETQGLTTIQADAYDDLAYAP 165

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           T     + ++   G L                  + DLD  E  +  + +    L   LF
Sbjct: 166 TRRTAAILLDQALGAL------------------DRDLDSLERLEADDPACAADLRATLF 207

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
            + ++ S +          +G+ + + G  N GKSSL NALA    AIV+   GTTRDVL
Sbjct: 208 QRFEVGSRLI---------SGWNVALAGRPNVGKSSLMNALAGHARAIVSPQAGTTRDVL 258

Query: 259 TIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI--- 314
           T+ L  +G+ + + DTAG+R +  D +E +GI R       ADL+LLL + +   E    
Sbjct: 259 TVPLACDGWPMTLFDTAGLRDQPSDDLEAQGILRARNAQTQADLVLLLLDSSQPLEPLDL 318

Query: 315 ----SFPKNIDFIFIGTKSDLYSTYTEE----YDHLI--SSFTGEGLEELINKIKSILSN 364
               ++P   + + + TK+DL   +  E       L+  S+ TGEGL+ L++++   L  
Sbjct: 319 ALLHTYP---NALLVATKADLAPHWRAEDLPTTRKLVSLSALTGEGLDRLLDRLAQRLVP 375

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVR 388
                  ++P    HL  L++T R
Sbjct: 376 NPPPAGSAVPFRIDHLTQLNRTNR 399


>gi|221042244|dbj|BAH12799.1| unnamed protein product [Homo sapiens]
          Length = 151

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 65/107 (60%), Gaps = 2/107 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A PG
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEPG 141


>gi|325109259|ref|YP_004270327.1| small GTP-binding protein [Planctomyces brasiliensis DSM 5305]
 gi|324969527|gb|ADY60305.1| small GTP-binding protein [Planctomyces brasiliensis DSM 5305]
          Length = 370

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 144/328 (43%), Gaps = 53/328 (16%)

Query: 76  TGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLI 135
           T   S E H HGG A +  ILE+L                  F   KI   E +S++   
Sbjct: 74  TSTCSVEIHCHGGPAAIGRILEDLE-----------------FLGAKILPRETDSVSI-- 114

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS-SKEVLN 194
                        G S  LS L       +   R+F  A+  +S+   +  +   +++L 
Sbjct: 115 -------------GHSRWLSDLE----TAVVQARTFRAAEFLWSQRPLLSVWERCEQILR 157

Query: 195 DILFLKNDISSHISQGK----LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           +   L  ++ S + +       G+ +   +++VI G  NAGKSSL NAL   + AIV D 
Sbjct: 158 ENGPLPTELRSQLIEASRWSLFGQHLTQPWQVVIGGAPNAGKSSLINALLGYERAIVYDQ 217

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK--RTFLEVENADLILLLKEI 308
           PGTTRD +  +  ++G+ V +SDTAG R + + +E  GI+  RT L   +  +IL+ +  
Sbjct: 218 PGTTRDAVKAETAIDGWPVMLSDTAGQRASSETIEAAGIEIARTLLRSADLAVILIDRSA 277

Query: 309 NSKKEI-----SFPKNIDFIFIGTKSDLYSTYTE-EYDHL---ISSFTGEGLEELINKIK 359
            S  +I     +FP N   +F       ++ +T+ E+D     +S     GLEEL+  I 
Sbjct: 278 PSDSDIETLLQAFP-NALVVFNKCDQSAHADWTDREFDSTVLEVSCRDQTGLEELLTTIT 336

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTV 387
             L          IP     L+ L Q++
Sbjct: 337 EKLVPALPAADTLIPVTATQLHLLQQSL 364


>gi|327539637|gb|EGF26245.1| tRNA modification GTPase TrmE [Rhodopirellula baltica WH47]
          Length = 404

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 108/405 (26%), Positives = 172/405 (42%), Gaps = 54/405 (13%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGP---SCFQVCEFICKKKKPFPRKASLRYFFGL- 56
           M    ET     TG   SA+++I L GP    C Q C               +RY     
Sbjct: 1   MTSTNETTATRLTGVGLSAVAVIGLRGPRALQCVQDCFTPATNASSSLSAGQVRYGTWKS 60

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             DG     G  IV  +P +   + S E H HGG A V+ IL  L     +       + 
Sbjct: 61  SDDG----PGESIVL-TPMT---DGSFEIHGHGGEAAVSAILASLTDR-GVESVESSTWQ 111

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           + A     I L EAE +  L    T  Q  ++++   G+L+    QW+ +   I  F  +
Sbjct: 112 KSA----PILLSEAEYV--LQRCVTGQQAAVALDQTRGQLAQWGQQWLQR---IDEFSSS 162

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           D    E E +     K           D  +  + G+ G  +    ++V+ G  N GKSS
Sbjct: 163 DELSEESESLLAALCK-----------DAQTIATNGERGVRLTEPRRLVLAGPPNVGKSS 211

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI------VEKEG 288
           L N +     +I  D  GTTRDVL  D  + G  V++SDTAGIRET  +      +E+EG
Sbjct: 212 LMNQIVGFRRSITHDSAGTTRDVLQCDTVIAGVPVRMSDTAGIRETSHLTESSVAIEREG 271

Query: 289 IKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYSTYTE---- 337
           I+R  + +E+ADL+L++ + ++       ++ +        + +  K+DL S  T+    
Sbjct: 272 IRRASVAIESADLLLIVCQPSTLIDLQDFRRSLPVSNKTHVVEVLNKADLLSDNTKSIAG 331

Query: 338 --EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
             E+  + S     G+ +L+  + + L+         +P  +R L
Sbjct: 332 EIEHQTIASEDDDPGVGKLMKTLAAHLTATLPPRHSPVPICQRQL 376


>gi|167947906|ref|ZP_02534980.1| tRNA modification GTPase TrmE [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 102

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/93 (47%), Positives = 62/93 (66%), Gaps = 1/93 (1%)

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
           F   DG ++D G+L+ FP+P SFTGED  EF  HGG  +++ +L+ +  +  +R A  GE
Sbjct: 1   FHDQDGSVIDTGILLYFPAPHSFTGEDVLEFQAHGGAVILDLLLQRILDL-GIRPARAGE 59

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRL 145
           F+ RAF NGKIDL +AE++ADLI + T    RL
Sbjct: 60  FTERAFLNGKIDLAQAEAVADLIEARTVSAARL 92


>gi|270667892|ref|ZP_06222479.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
 gi|270316770|gb|EFA28527.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
          Length = 112

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 61/86 (70%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+
Sbjct: 1   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRD 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
             D VE+ GI R + E+E AD I+L+
Sbjct: 61  ATDEVERIGISRAWTEIEQADRIILM 86


>gi|149176952|ref|ZP_01855561.1| tRNA modification GTPase [Planctomyces maris DSM 8797]
 gi|148844207|gb|EDL58561.1| tRNA modification GTPase [Planctomyces maris DSM 8797]
          Length = 387

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 177/397 (44%), Gaps = 63/397 (15%)

Query: 19  AISIIRLSG-----PSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPE 73
           A++ IR+ G      +    C F    +K    +   R  +GL G+  ++ L++      
Sbjct: 25  AVATIRVCGELISVAAAIDAC-FHAVNQKSLEAQPLNRIVYGLWGQGSNEDLVVCR---- 79

Query: 74  SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133
               +++ + H HGG+A V  IL +L +            SR ++E           LA 
Sbjct: 80  --LDQNTVDIHCHGGMAAVERILSDLEEQ---------GCSRNSWEQ----------LAK 118

Query: 134 LISSE--TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
              +E   E+Q RL+          L  Q       ++S  EA L      + Q+F++  
Sbjct: 119 FTRTELDVELQERLTAATTFRTAEILLRQ---SEGLLKSAFEALLPV----EGQSFNTGH 171

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
                   ++ I   +     G  +   +++V+ G  N GKSSL NA+   + +IV +  
Sbjct: 172 -------FQSQIEKLLYWEPFGLHLVTPWRVVLAGRPNVGKSSLINAILGYERSIVFNEA 224

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           GTTRDVLT    +EG+ ++ SDTAGIRE  D +E  GI+R    ++++D  L+L +++  
Sbjct: 225 GTTRDVLTATTAIEGWPIQFSDTAGIREQADALETTGIQRAEQMMQSSDCNLILIDVSQP 284

Query: 312 KEISFPKNI----DFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSN 364
           ++    + I    D I +  K+DL   + +        +SS T  G++ L++++   L  
Sbjct: 285 EQADDQRLIALWSDSILVAHKTDLPRRWKQSLPDSAVSVSSITKSGIDILLDRLIQKLVP 344

Query: 365 KF--KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           +   +  P  + S +  L H     R LE  +LN+ D
Sbjct: 345 EVPDQNTPVPVTSRQIQLLH-----RALE--ALNKAD 374


>gi|82540701|ref|XP_724648.1| tRNA modification GTPase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479363|gb|EAA16213.1| probable tRNA modification GTPase trme [Plasmodium yoelii yoelii]
          Length = 754

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 151/392 (38%), Gaps = 122/392 (31%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGP---------------------------------- 28
           +EKETI+A+S+G   SAISIIR+SG                                   
Sbjct: 126 NEKETIYALSSGTNLSAISIIRISGSLSKIILEILLHKDAEKDVEKDVEKKGDQINSYST 185

Query: 29  -------------SCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESF 75
                          + + E I  KK    RK      +     I+D  +   F SP S+
Sbjct: 186 QLLERNAKKKKKKKKWNLEEIIKLKKNIESRKLYYSKIYDNSNDIIDNVMYAYFKSPNSY 245

Query: 76  TGEDSAEFH----------VHGGIAVVNGILEE--------------------------- 98
           TGED  E +          +   I  +N I+ E                           
Sbjct: 246 TGEDVVEIYCHGNPFIVKEIMNAIDHINNIMYEIINDEKEKVKNKVKIKNKIKKTTHDEN 305

Query: 99  -------------------------LAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133
                                    L     +R +  GEF+ RAFEN K++LL+ E L +
Sbjct: 306 YNYNNDDWNYFNQIEQNQIEQTIFDLNNFVKIRESKKGEFTLRAFENNKMNLLQIEGLKE 365

Query: 134 LISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--------DVQ 185
           L+  + ++Q+++++  ++G   ++Y +  + +  +  +I+  +DF ++          + 
Sbjct: 366 LLFCKQKIQKKIALNYLNGYAKNIYLKLRNDIKKLLIYIQLKIDFEDDHIITKKKKKYIN 425

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
            +  K+V N I  +K      I + K  E +     ++I G+ NAGKS+  N +   D++
Sbjct: 426 MYIKKKVNNSIKHIK-----EILKRKNIESLNTPSNVLIFGNVNAGKSTFMNYICNSDIS 480

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           IVT I GTT D++   + L        D+AG+
Sbjct: 481 IVTKIKGTTLDIIQKTVKLFKNDYNFCDSAGV 512


>gi|10802646|gb|AAG23546.1|AF244597_1 thiophene degradation protein F [Carboxydothermus hydrogenoformans]
          Length = 184

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 102/189 (53%), Gaps = 22/189 (11%)

Query: 25  LSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGLD---GRILDKGLLIVFPSPES 74
           LSG     +   I +   P+ +K        +L Y   +D   G + D+ L+ +   P +
Sbjct: 1   LSGDRALDIISRIFR---PYKKKDVKNVKTHTLHYGHIVDPDTGEVYDEVLVSIMKKPNT 57

Query: 75  FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134
           +T ED  E + HGGI V + ILE + K    RLA PGEF++RAF NG+IDL +AE++ D+
Sbjct: 58  YTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFLNGRIDLSQAEAVIDI 116

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF------- 187
           I+++T +  + + + +SG L     +  D++  + + + A +DF  E+DV          
Sbjct: 117 ITAKTMLANKYAQKQLSGYLGQKMRKLKDRMMELLAHLLALIDFP-EDDVDELERWQMLE 175

Query: 188 SSKEVLNDI 196
           S+KE+L +I
Sbjct: 176 SAKEILKEI 184


>gi|218281198|ref|ZP_03487722.1| hypothetical protein EUBIFOR_00285 [Eubacterium biforme DSM 3989]
 gi|218217586|gb|EEC91124.1| hypothetical protein EUBIFOR_00285 [Eubacterium biforme DSM 3989]
          Length = 161

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 3/155 (1%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG--RILD 62
           + TI A+ST     AISIIRLSG    ++ + I  +     +  ++ Y F +D     +D
Sbjct: 3   ENTIAAISTSLQDGAISIIRLSGDQAIEITQKIFDRNIMNAKSHTIHYGFIIDPDKNPVD 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+ +F +P+++T ED  E + HGG  +   IL  +A      LA PGEF++RAF +G+
Sbjct: 63  EVLISIFRAPKTYTREDIVEINCHGGTFITRKILS-MALSAGADLAKPGEFTQRAFYHGR 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSL 157
           IDL +AE++ D+I +       +++ G+ G +  +
Sbjct: 122 IDLSQAEAVQDMIEASNNTAATMAIHGIKGSVKKI 156


>gi|296122241|ref|YP_003630019.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776]
 gi|296014581|gb|ADG67820.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776]
          Length = 411

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 8/193 (4%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G  +  G+ + I+G  NAGKSSL N L   + +IV D PGTTRD++     + G+LV ++
Sbjct: 204 GRRLTEGWVVSIVGLPNAGKSSLINRLLGYERSIVIDQPGTTRDIVRASTAIGGWLVHLA 263

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNI-DFIFIGTK 328
           DTAG+RE++D +E EGI++T      ADL++ + + +      ++   +   D + +  K
Sbjct: 264 DTAGVRESEDPLEAEGIQKTMATAGQADLVMYVVDASQSLQAADVQLSRQFRDVVVLLNK 323

Query: 329 SDL---YSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
            DL        +  D L IS+ T +G+  L++ +   L  +       IP   R    L 
Sbjct: 324 CDLPMDRDVLQQWPDALPISTVTSQGIMPLLDILARRLMRRGPAPDVMIPVTLRQQSCLQ 383

Query: 385 QTVRYLEMASLNE 397
           + +  L  + +++
Sbjct: 384 KVLTALRASDIDQ 396


>gi|168705339|ref|ZP_02737616.1| tRNA modification GTPase TrmE [Gemmata obscuriglobus UQM 2246]
          Length = 275

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 5/169 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+VI G  N GKSSL NALA    A+V+D+ GTTRD +++    +G+ V++ DTAGIR+
Sbjct: 71  WKVVIAGAPNVGKSSLINALAGYQRAVVSDVAGTTRDTVSVRTAFDGWPVELIDTAGIRD 130

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-- 337
            + + E EGI R    ++ ADL++ + +  +   + +P       +  KSD      +  
Sbjct: 131 AEGL-EAEGIARAKRALDEADLVVWVLD-GAALRLEWPGAGRLHVVINKSDALVNRNDIA 188

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
               L+S+ TGEG++ L N + + L  +      ++P +   L  L +T
Sbjct: 189 RTLPLVSARTGEGVQNLANDLVTKLVPQPPAAGAAVP-YTPQLVDLVRT 236


>gi|207741911|ref|YP_002258303.1| trna modification gtpase protein [Ralstonia solanacearum IPO1609]
 gi|206593297|emb|CAQ60224.1| probable trna modification gtpase protein [Ralstonia solanacearum
           IPO1609]
          Length = 192

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 4/121 (3%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A++T      I ++R+SGP    V + +C +    PR+A+   F   DG  +D+G+ +
Sbjct: 36  IAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRLL-QPRQAAYLPFLDADGHAIDRGIAL 94

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRAFENGKID 124
            FP+P S+TGED  E   HGG  V+  +L    +  +   +R+A PGEF+RR F N K+D
Sbjct: 95  WFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGREIGVRVAEPGEFTRRPFLNDKMD 154

Query: 125 L 125
           L
Sbjct: 155 L 155


>gi|213418886|ref|ZP_03351952.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 186

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 21/187 (11%)

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNID 321
           DTAG+R+ +D VE+ GI+R + E+E AD +L + +  +   +             PKN+ 
Sbjct: 2   DTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLP 61

Query: 322 FIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
              +  K+D+       +E   H    +S+ TGEG++ L N +K  +      +     +
Sbjct: 62  ITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFD-TNMEGGFLA 120

Query: 376 HKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
            +RHL  L++   +LE   A L     G +++AE LRLA  SL +ITG    + LL  IF
Sbjct: 121 RRRHLQALAEAANHLEQGKAQLLGAWAG-ELLAEELRLAQQSLSEITGEFTSDDLLGRIF 179

Query: 434 SKFCIGK 440
           S FCIGK
Sbjct: 180 SSFCIGK 186


>gi|23007906|ref|ZP_00049576.1| COG0486: Predicted GTPase [Magnetospirillum magnetotacticum MS-1]
          Length = 189

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 100/178 (56%), Gaps = 12/178 (6%)

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL--KEINSKKEISFPKNID--FIFIGT 327
           +DTAG+R++   +E EG++R       +DL L +    +    + +  + ID   + +  
Sbjct: 15  ADTAGLRDSHCEIESEGVRRAEARAAQSDLRLCVFDGALYPSLDAATREMIDDASLVVLN 74

Query: 328 KSDLYS-----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           K DL       T        +S+  GEG+++L+  +++++ ++F      + + +RH   
Sbjct: 75  KRDLMGPDIPDTIMGRPVLALSAKGGEGMDDLVAALQAMVESRFAVGAAPVLTRERHRVA 134

Query: 383 LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++ V  L   +  +   G+++ AE+LRLA+ SLG+ITG VDV+++LD+IF +FCIGK
Sbjct: 135 VAEAVLAL---TRFDPGMGVEMAAEDLRLAARSLGRITGRVDVDEILDVIFHEFCIGK 189


>gi|62719467|gb|AAX93334.1| tRNA modification GTPase TtrmE [Lactobacillus sanfranciscensis]
          Length = 232

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 127/239 (53%), Gaps = 36/239 (15%)

Query: 231 GKSSLFN----ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
           G+ ++ N    +L  ++ AIVTD+PGTTRDVL   +++ G  + + DTAGIRET+D VEK
Sbjct: 1   GRPNVVNQVVESLLHEEKAIVTDVPGTTRDVLDEYVNVAGVPLHLIDTAGIRETEDKVEK 60

Query: 287 EGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-----YS 333
            G+ R+   ++ ADL+LL+  +NS + ++          ++   + +  K+DL       
Sbjct: 61  IGVDRSRAAIKKADLVLLV--LNSSEPLTDEDRQLLDLTRDSKRVILLNKTDLPMKLDIE 118

Query: 334 TYTEEY---DHLISSFTGEG----LEELINKI---KSILSNKFKKLPFSIPSHKRHLYHL 383
               EY   D + +S   E     LE+ I+++   K I S +   +     ++ RH+  L
Sbjct: 119 KIKAEYGNSDMIKTSAMAENGTKTLEDTISQMFFTKGIASTQNSVM----VTNARHISLL 174

Query: 384 SQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            Q +  ++   ++    GL  DI+  +L+ A   LG ITG    ++L+D +F +FCIGK
Sbjct: 175 QQALDSVQTV-IDGIGAGLPVDIVQIDLQSAWDDLGAITGDSYDDELMDQLFDQFCIGK 232


>gi|20146198|dbj|BAB88986.1| thiopen and furan oxidase homolog [Bacillus cereus]
          Length = 141

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 7/142 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58
           E +TI A+ST     AI+I+R+SG    +    I K K     P   ++ Y   +D    
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETE 140
            NG+IDL +AE++ DLI ++T+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTD 141


>gi|260890872|ref|ZP_05902135.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254]
 gi|260859425|gb|EEX73925.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254]
          Length = 162

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 59/81 (72%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L NAL  ++ AIVT I GTTRDV+   ++++G  + + DTAGIR+TDDIV
Sbjct: 1   MGKPNVGKSTLLNALLHEERAIVTHIAGTTRDVIEEIINIKGIPLVLVDTAGIRKTDDIV 60

Query: 285 EKEGIKRTFLEVENADLILLL 305
           E  G++++   +E ADL+LL+
Sbjct: 61  ENIGVEKSKQFIEKADLVLLV 81


>gi|325283649|ref|YP_004256190.1| GTP-binding protein engA [Deinococcus proteolyticus MRP]
 gi|324315458|gb|ADY26573.1| GTP-binding protein engA [Deinococcus proteolyticus MRP]
          Length = 441

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL NA+ + D AIV D+PGTTRD L ++ D  G    + DTAGIR+ 
Sbjct: 174 RISLIGRPNVGKSSLLNAITQSDRAIVADVPGTTRDSLDVEWDYGGQRFVLVDTAGIRKK 233

Query: 281 DDI-VEKEGIKRTFLEVENADLILLL 305
            D  +E   I+R+   +E +DLI L+
Sbjct: 234 PDTAIEDYAIQRSQAAIERSDLIWLV 259



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  N GKSSLFN L  +  A+V D PG TRD     +    + + + DT G+  
Sbjct: 2   HKVAIVGRPNVGKSSLFNRLIGRREAVVADFPGVTRDAKEEIMLYHNHRITLVDTGGLWS 61

Query: 280 TDDIVEKEGIKRTFLE--VENADLILLL 305
            D   E E + R   E  +E AD ++ +
Sbjct: 62  GD---EWEAVIREKAEWALEGADAVIFV 86


>gi|315305259|ref|ZP_07875214.1| tRNA modification GTPase MnmE [Listeria ivanovii FSL F6-596]
 gi|313626371|gb|EFR95549.1| tRNA modification GTPase MnmE [Listeria ivanovii FSL F6-596]
          Length = 208

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 31/215 (14%)

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD ILL+  +N
Sbjct: 1   IAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADADFILLV--LN 58

Query: 310 SKKEISFPKNIDF--------IFIGTKSDLYSTYT-------EEYDHLISS--FTGEGLE 352
             +E++      F        + +  K+DL +             + ++S+     EGLE
Sbjct: 59  QNEELTVEDEALFEAAAGHHYVVVLNKTDLETKLDINRVRKLAGNNPIVSTSLVNDEGLE 118

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DII 405
            L   IK++  +        +  S+ RH+  L Q      + SLN    G+      DI+
Sbjct: 119 ALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQA-----LESLNAVTTGIQLGMPVDIV 173

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 174 QIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 208


>gi|238602569|ref|XP_002395715.1| hypothetical protein MPER_04185 [Moniliophthora perniciosa FA553]
 gi|215466926|gb|EEB96645.1| hypothetical protein MPER_04185 [Moniliophthora perniciosa FA553]
          Length = 112

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/72 (50%), Positives = 53/72 (73%)

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           K+ L N LA+++ AIVT IPGTTRD+L + LD+ G  V ++DTAG+R+T+D+VE  GI+R
Sbjct: 4   KAVLLNFLAQREAAIVTSIPGTTRDILEVSLDIGGLPVIVADTAGLRQTEDVVENIGIER 63

Query: 292 TFLEVENADLIL 303
               V+ +D+ L
Sbjct: 64  ARNRVQGSDISL 75


>gi|61679426|pdb|1XZP|B Chain B, Structure Of The Gtp-Binding Protein Trme From Thermotoga
           Maritima
          Length = 150

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 74/119 (62%), Gaps = 3/119 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI AV+T     AI+I+RLSGP  +++ +  +  + K  PRKA +  +   +G  +D+ 
Sbjct: 34  DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKA-IHGWIHENGEDVDEV 92

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           +++ + SP+S+TGED  E   HGG  VV  +L+   K    R+A PGEF++RAF NGK+
Sbjct: 93  VVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKS-GARMAEPGEFTKRAFLNGKM 150


>gi|284097722|ref|ZP_06385732.1| tRNA modification GTPase trmE [Candidatus Poribacteria sp. WGA-A3]
 gi|283830768|gb|EFC34868.1| tRNA modification GTPase trmE [Candidatus Poribacteria sp. WGA-A3]
          Length = 173

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 26/163 (15%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------------------- 42
           N   +TI A++T      I I+R+SG    +V   + + +                    
Sbjct: 3   NSVDDTICAIATPVGEGGIGIVRVSGAQAIEVAAHVVRPRNRQSLQELENHRLYLSDVLY 62

Query: 43  ---PFPR---KASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGIL 96
              P P    +          G  +D+ L+++   P S+TGED  E   HGG  ++    
Sbjct: 63  PESPLPPGEGQGEGPSQAVEQGTAIDEALVVIMRKPRSYTGEDVVEIQTHGGAWILQATC 122

Query: 97  EELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             L +    RLA+PGEF++RAF NG++DL +AE++ D I + T
Sbjct: 123 HGLIRH-GARLAHPGEFTKRAFLNGRLDLTQAEAVLDTIQATT 164


>gi|61679428|pdb|1XZQ|B Chain B, Structure Of The Gtp-Binding Protein Trme From Thermotoga
           Maritima Complexed With 5-Formyl-Thf
          Length = 149

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 3/118 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI AV+T     AI+I+RLSGP  +++ +  +  + K  PRKA +  +   +G  +D+ 
Sbjct: 34  DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKA-IHGWIHENGEDVDEV 92

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +++ + SP+S+TGED  E   HGG  VV  +L+   K    R+A PGEF++RAF NGK
Sbjct: 93  VVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKS-GARMAEPGEFTKRAFLNGK 149


>gi|15807299|ref|NP_296029.1| GTP-binding protein EngA [Deinococcus radiodurans R1]
 gi|26006746|sp|Q9RS19|DER_DEIRA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|6460115|gb|AAF11852.1|AE002062_5 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 438

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL NA+ + D AIV D+PGTTRD L ++ D  G    + DTAGIR+ 
Sbjct: 174 RISLIGRPNVGKSSLLNAITQSDRAIVADLPGTTRDSLDVEWDYGGQRFVLVDTAGIRKK 233

Query: 281 DDI-VEKEGIKRTFLEVENADLILLL 305
            D  +E   I+R+   +E +D+I L+
Sbjct: 234 PDTAIEDFAIQRSQAAIERSDVIWLV 259



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  N GKSSLFN L  +  A+V D PG TRD     +    + + + DT G+  
Sbjct: 2   HKVAIVGRPNVGKSSLFNRLIGRREAVVADFPGVTRDAKEGLMLYHNHRITLIDTGGLWS 61

Query: 280 TDD 282
            D+
Sbjct: 62  GDE 64


>gi|116491039|ref|YP_810583.1| GTPase [Oenococcus oeni PSU-1]
 gi|290890519|ref|ZP_06553594.1| hypothetical protein AWRIB429_0984 [Oenococcus oeni AWRIB429]
 gi|116091764|gb|ABJ56918.1| Predicted GTPase [Oenococcus oeni PSU-1]
 gi|290479915|gb|EFD88564.1| hypothetical protein AWRIB429_0984 [Oenococcus oeni AWRIB429]
          Length = 442

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 61/89 (68%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           KI I+G  N GKSS+FN+L K++ +IV+DI GTTRD +     D +G +  ISDTAGIR+
Sbjct: 182 KIAIIGRPNVGKSSIFNSLIKRNRSIVSDIQGTTRDTVDSQFEDNQGNVFTISDTAGIRK 241

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLL 305
           +  ++   EK  + R  + +E+AD+IL++
Sbjct: 242 SGKVIESTEKYAVLRAQMAIESADVILVV 270



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y I I+G  N GKS+LFN +     AIV DI G TRD L    +  G    + DT GI  
Sbjct: 5   YTIAIVGRPNVGKSTLFNRIVGTRKAIVNDISGVTRDRLYEKAEWNGSEFSVIDTGGISA 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           ++D+  KE  ++  L ++ AD I+ +
Sbjct: 65  SNDVFIKEIKEQAELAIKEADAIIFV 90


>gi|115372271|ref|ZP_01459581.1| thiophene and furan oxidation protein ThdF [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370736|gb|EAU69661.1| thiophene and furan oxidation protein ThdF [Stigmatella aurantiaca
           DW4/3-1]
          Length = 164

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 89/158 (56%), Gaps = 3/158 (1%)

Query: 82  EFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141
           E   HG   ++  +L  + +   +R A PGEF+RRAF  G+IDL  AE++ADL+++++E 
Sbjct: 3   ELQAHGSPRLLQLLLARVLEDERVRPARPGEFTRRAFLQGRIDLTRAEAVADLVAADSEA 62

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
             R +  G++G LS       + L  + + +E  L+F +E +  +  +      +  L++
Sbjct: 63  AVRAAAAGLAGALSHRVRALEEPLRALHADLEGVLNFPDEAEGADEGAG---PRVAALRS 119

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +  + +S+   G ++R G ++ + G  NAGKS+LFN L
Sbjct: 120 EAEALLSEAGRGRLVRRGARVALYGPVNAGKSTLFNRL 157


>gi|226357377|ref|YP_002787117.1| GTP-binding protein EngA [Deinococcus deserti VCD115]
 gi|259645869|sp|C1D094|DER_DEIDV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226319367|gb|ACO47363.1| putative GTP-binding protein [Deinococcus deserti VCD115]
          Length = 441

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL NA+   D AIV D PGTTRD L ++ D  G    + DTAGIR+ 
Sbjct: 174 RISLIGRPNVGKSSLLNAITNTDRAIVADQPGTTRDSLDVEWDFGGQRFVLVDTAGIRKK 233

Query: 281 DDI-VEKEGIKRTFLEVENADLILLL 305
            D  +E   I+R+   ++ +DLI L+
Sbjct: 234 PDTAIEDYAIQRSQAAIQRSDLIWLV 259



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  N GKSSLFN L  +  A+V D PG TRD     +    + + + DT G+  
Sbjct: 2   HKVAIVGRPNVGKSSLFNRLIGRREAVVADFPGVTRDAKEGLMLYHNHRITLVDTGGLWS 61

Query: 280 TDD 282
            D+
Sbjct: 62  GDE 64


>gi|297565398|ref|YP_003684370.1| ribosome-associated GTPase EngA [Meiothermus silvanus DSM 9946]
 gi|296849847|gb|ADH62862.1| ribosome-associated GTPase EngA [Meiothermus silvanus DSM 9946]
          Length = 437

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           KI I+G  NAGKSSL NA+  ++  IV++ PGTTRD + ++ D  G L ++ DTAGIR+ 
Sbjct: 176 KIAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDSIDVEFDYGGTLFQLVDTAGIRKR 235

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            + +VE+  I R    +E AD++ L+
Sbjct: 236 PETLVEELAIARAHKSIEEADIVFLV 261



 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 22/162 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           YK+VI+G  N GKSSLFN L  K  A+V D PG TRD+    ++ E    K+ DT G+  
Sbjct: 2   YKVVIVGRPNVGKSSLFNRLLGKRHAVVADQPGVTRDLKEATVESERGRFKLVDTGGLW- 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----------KNIDFIFIGTKS 329
           + D+ E++  ++    +E+ADL+L    ++ + +IS            K+ + + + TK 
Sbjct: 61  SGDVWEQKIKEKVEAALEDADLVLFT--VDGRADISPADLEVADFLRRKHSNVLLVATKV 118

Query: 330 D--LYSTYTEEYDHL-------ISSFTGEGLEELINKIKSIL 362
           D   +  Y  +   L        SS    GL+EL +KI S L
Sbjct: 119 DDPKHENYLGDLWALGFGEPVPTSSSHARGLDELEDKIWSKL 160


>gi|320451137|ref|YP_004203233.1| ribosome-associated GTPase EngA [Thermus scotoductus SA-01]
 gi|320151306|gb|ADW22684.1| ribosome-associated GTPase EngA [Thermus scotoductus SA-01]
          Length = 432

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G K+ I+G  NAGKSSL NA+  ++  IV++ PGTTRD + +     G    + DTAGIR
Sbjct: 173 GIKLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDAIDVHFTFRGQPFVLVDTAGIR 232

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLL 305
           +  + +VE+  I+R+   +E AD++LL+
Sbjct: 233 KRPESLVEELAIRRSLKAIEEADVVLLV 260



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 29/170 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+VI+G  N GKSSLFN L  K  A+V D+PG TRD+    ++ E     + DT G+  
Sbjct: 2   HKVVIVGRPNVGKSSLFNRLLGKRSAVVADVPGVTRDLKEGVVESEKGRFLLVDTGGLW- 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKS 329
           + D  EK+  ++    +E+A+++L    ++ + E++            K    I + TK 
Sbjct: 61  SGDRWEKKIQEKVDQALEDAEVVLF--AVDGRSELTQADYEVAEYLRKKGRPVILVATKV 118

Query: 330 D-------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLP 370
           D       L   Y   +   I  SS    GLEEL+  I       ++KLP
Sbjct: 119 DDPKHEHYLGPLYALGFGDPIPTSSEHARGLEELLEAI-------WEKLP 161


>gi|319941508|ref|ZP_08015835.1| GTP-binding protein engA [Sutterella wadsworthensis 3_1_45B]
 gi|319804982|gb|EFW01821.1| GTP-binding protein engA [Sutterella wadsworthensis 3_1_45B]
          Length = 451

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 31/179 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ + G  NAGKS+L NAL  ++  I  D+PGTTRD + ID + +G   ++ DTAG+R+ 
Sbjct: 184 KVTLAGRPNAGKSTLINALVGEERVIAFDMPGTTRDAIKIDFEYDGRPYELVDTAGLRKK 243

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGT 327
             +   VEK  + +T   +E+A++++L+  +++K+ +S                 +    
Sbjct: 244 GRVFEAVEKFSVVKTLQAIEDANVVILV--VDAKEGVSEGDAHIAGYVLEAGRALVVAVN 301

Query: 328 KSDLYSTYTEEYDHL----------------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           K DL  +Y  E  +L                IS+    GL  L+  +    +  + KLP
Sbjct: 302 KWDLLDSYERERFNLDLERKLHFLRWARMIRISALKRNGLNHLMRAVDEAHAAAYAKLP 360



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 28/171 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+ FN L +   AIV D PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTFFNRLTRSRDAIVADFPGLTRDRQYGQGRVGPGPYIVVDTGGF---- 60

Query: 282 DIVEKEGIKRTF-----LEVENADLILLLKEIN---SKKEISFPKNID------FIFIGT 327
           + V  EGI +       L +E AD++L L +     + ++I   +++        + +  
Sbjct: 61  EPVRTEGIVQAMAGQAELAIEEADVVLFLTDARAGLTPQDIRIAQHLRRADRPVVLLVNK 120

Query: 328 KSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              L  T   E+        HL+S   G+G+ + ++   S L   F   PF
Sbjct: 121 AEGLTETAKAEFYELGLGEPHLVSGAHGQGVRDALDLAFSCLPEDF---PF 168


>gi|291320725|ref|YP_003515990.1| GTP binding protein EngA [Mycoplasma agalactiae]
 gi|290753061|emb|CBH41037.1| GTP binding protein engA [Mycoplasma agalactiae]
          Length = 436

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 67/99 (67%), Gaps = 5/99 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
           +K+ I+G  N+GKSSL NA+  ++ +IV+DI GTTRD +   ++L G+ ++I DTAGI  
Sbjct: 172 FKLSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDSVKSVVELRGHKIEIIDTAGITR 231

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             + DDIVE   +KR    ++ +DL ++L  I+S +E++
Sbjct: 232 KSKIDDIVEHLALKRAMSSLDESDLSIVL--IDSTRELA 268



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  K  +I  D PG TRD L       G  + + DT GI+   
Sbjct: 6   IAIIGKPNVGKSTLFNRLVGKRSSITFDRPGVTRDRLYESFTWNGKEINVIDTGGIQIEK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + + + +  + +E A++++ +
Sbjct: 66  KDFQDQILIQAKIAIEEANVVIFI 89


>gi|291279462|ref|YP_003496297.1| small GTP-binding protein [Deferribacter desulfuricans SSM1]
 gi|290754164|dbj|BAI80541.1| small GTP-binding protein [Deferribacter desulfuricans SSM1]
          Length = 438

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 17/146 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN LA K +AIV D+PG TRD L    + EG   KI DT G   
Sbjct: 2   FTVGIIGRPNVGKSTLFNRLAGKRIAIVDDMPGVTRDRLEYIAEWEGKKFKIVDTCGYDL 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------EISFPKNIDFIFIGTKS 329
            +++++KE IK+ +  ++ AD  +LL  +++K+           I   +   FI +  K 
Sbjct: 62  REELLKKEMIKQFYASLDEADFFVLL--VDAKEGLHPLDEMVCNILREREKKFIVVANKV 119

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELI 355
           D      E+    ++ F   G+EE+I
Sbjct: 120 D-----NEKLQSFVADFYQLGVEEII 140



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+V++G  N GKSSL N+    +  IVT IPGTTRD +    +       + DTAGIR+ 
Sbjct: 175 KVVVVGRPNVGKSSLINSWLGDERLIVTPIPGTTRDSVDTYFEYNSKKYTLIDTAGIRKK 234

Query: 281 D----DIVEKEGIKRTFLEVENADL 301
                D +EK G  R++  +  AD+
Sbjct: 235 SVMFKDKIEKYGFYRSYDAIRRADI 259


>gi|291613885|ref|YP_003524042.1| ribosome-associated GTPase EngA [Sideroxydans lithotrophicus ES-1]
 gi|291583997|gb|ADE11655.1| ribosome-associated GTPase EngA [Sideroxydans lithotrophicus ES-1]
          Length = 465

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 31/179 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L NA+  ++  I  D PGTTRD + ID +  G    I DTAGIR  
Sbjct: 178 KLAIVGRPNVGKSTLVNAILGEERVIAFDQPGTTRDSIYIDFERAGRQYTIIDTAGIRRR 237

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN--IDFIFIGTKS------ 329
            + D+ +EK  + +T   +E+A++++L+  ++++ +I+       DF+    ++      
Sbjct: 238 GKIDEAIEKFSVVKTLQAIEDANVVVLV--VDARDQITEQDAHLADFVLQAGRALVLAVN 295

Query: 330 -----DLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
                D Y   T + D             H IS+  G G++ L+  +    +    K+P
Sbjct: 296 KWDGLDEYKRDTVKRDIERKLHFLSFAKHHFISALNGTGVDALLKSVNQAYTAAMTKMP 354



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +V++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G+    
Sbjct: 5   LVLVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGRGRVGERPYLVVDTGGL---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V KEGI     K+T   V+ ADL+L +
Sbjct: 61  EPVAKEGIMHEMAKQTRQAVDEADLVLFI 89


>gi|148377986|ref|YP_001256862.1| GTP-binding protein EngA [Mycoplasma agalactiae PG2]
 gi|238686669|sp|A5IZG5|DER_MYCAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|148292032|emb|CAL59424.1| GTP binding protein engA [Mycoplasma agalactiae PG2]
          Length = 436

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 66/99 (66%), Gaps = 5/99 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
           +K+ I+G  N+GKSSL NA+  ++ +IV+DI GTTRD +   ++L G+ ++I DTAGI  
Sbjct: 172 FKLSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDGVKSVVELRGHKIEIIDTAGITR 231

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             + DD VE   +KR    ++ +DL ++L  INS +E++
Sbjct: 232 KSKIDDTVEHLALKRAMSSLDESDLSIVL--INSTRELA 268



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  K  +I  D PG TRD L       G  + + DT GI+   
Sbjct: 6   IAIIGKPNVGKSTLFNRLVGKRSSITFDRPGVTRDRLYESFTWNGKEINVIDTGGIQIEK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + + + +  + +E A++++ +
Sbjct: 66  KDFQDQILIQAKIAIEEANVVIFI 89


>gi|218294927|ref|ZP_03495781.1| small GTP-binding protein [Thermus aquaticus Y51MC23]
 gi|218244835|gb|EED11359.1| small GTP-binding protein [Thermus aquaticus Y51MC23]
          Length = 432

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 1/88 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  NAGKSSL NA+  ++  IV++ PGTTRD + +++   G    + DTAGIR
Sbjct: 173 GIRLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDTIDVEVYRNGNRFVLLDTAGIR 232

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLL 305
           +  + IVE+  I+R+   +E AD++LL+
Sbjct: 233 KRPESIVEELAIRRSLRAIEEADVVLLV 260



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+VI+G  N GKSSLFN L  K  A+V D PG TRD+    ++ E     + DT G+  
Sbjct: 2   HKVVIVGRPNVGKSSLFNRLLGKRSAVVADEPGVTRDLKEGVVETEQGRFLLVDTGGL-W 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILL 304
           + D  EK+  ++    +E A+L+L 
Sbjct: 61  SGDRWEKKIQEKVDRALEEAELVLF 85


>gi|294675553|ref|YP_003576169.1| ribosome-associated GTPase EngA [Prevotella ruminicola 23]
 gi|294472941|gb|ADE82330.1| ribosome-associated GTPase EngA [Prevotella ruminicola 23]
          Length = 437

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 83/169 (49%), Gaps = 22/169 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV+D  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRHAIVSDEAGTTRDRQYGKCEWNGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +DD+ E+E  K+  +  E ADL+L L +IN+          +I     +  I +  K+
Sbjct: 62  VNSDDVFEEEIRKQVIIATEEADLVLFLCDINNGVTGWDMDVAQILRRAKLPVILVANKA 121

Query: 330 ----DLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFK 367
               DLY  Y  E+  L       IS+ TG G  +L++K+  IL  K K
Sbjct: 122 DDGKDLYDQY--EFYKLGLGDPFPISAATGSGTGDLLDKVLEILPEKPK 168



 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVTDI GTTRD +    D  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTDIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRK 236

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
           + + E      + R+   +EN+D+ +L+
Sbjct: 237 NKVTEDLEFYSVMRSIRAIENSDVCVLM 264


>gi|291297034|ref|YP_003508432.1| small GTP-binding protein [Meiothermus ruber DSM 1279]
 gi|290471993|gb|ADD29412.1| small GTP-binding protein [Meiothermus ruber DSM 1279]
          Length = 453

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 57/86 (66%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKSSL NA+  ++  IV++IPGTTRD + ++ D  G    + DTAGIR+ 
Sbjct: 187 RLAIVGRPNAGKSSLLNAILGEERVIVSEIPGTTRDSIDVEFDYGGSRFLLVDTAGIRKR 246

Query: 281 DDI-VEKEGIKRTFLEVENADLILLL 305
            +  VE++ I R    + +AD++LL+
Sbjct: 247 PETGVEEQAIVRAHQAIRDADVVLLV 272



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 13/97 (13%)

Query: 220 YKIVILGHSNAGKSSLFNAL------------AKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           Y++VI+G  N GKSSLFN L            A    A+V D+PG TRD+    ++ E  
Sbjct: 2   YRVVIVGRPNVGKSSLFNKLLGLRAAPEKAAKAGSQFAVVADVPGVTRDLKEGVVESEQG 61

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
             K+ DT G+  + D+ EK+  ++    + +ADL+L 
Sbjct: 62  RFKLVDTGGL-WSGDVWEKKIKQKVERAIADADLVLF 97


>gi|307299325|ref|ZP_07579126.1| ribosome-associated GTPase EngA [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915121|gb|EFN45507.1| ribosome-associated GTPase EngA [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 441

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 32/183 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  NAGKSS+FN +     ++VT++ GTTRD +   ++++G  +   DTAGIR+ 
Sbjct: 182 KIAIVGKPNAGKSSIFNWIVGSPRSLVTEVSGTTRDTVDETVEVDGIPITFIDTAGIRKK 241

Query: 281 DDI----VEKEGIKRTFLEVENADLILL-----------------LKEINSKKEISFPKN 319
             +    VE   + R    +E +D++++                 L E N K  I+    
Sbjct: 242 SKVKVMNVEYYSVMRAIDALERSDIMVMVIDSADGVGNQDQRIAGLAEKNGKATIAVFNK 301

Query: 320 IDFIFIGTKSDLYSTYTE-----EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D +    +  L  T+ +     +Y  +I  S+ TGEG++ELI+ IK +     KK+   
Sbjct: 302 CDLVDERRRKALLRTFKQDLYFIDYSPVIFTSTLTGEGMDELIDSIKLV----SKKIDLR 357

Query: 373 IPS 375
           +P+
Sbjct: 358 LPT 360



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++I+G  N GKS+LFN L     AIV D+PG TRD     ++ +    ++ DT G+ E  
Sbjct: 4   VLIIGRPNVGKSTLFNRLVGGRRAIVDDLPGVTRDFTVGRVNWQQRTFQLVDTCGLFENP 63

Query: 282 DIVEKEGIKRTFLE-VENADLILLL 305
           + + +E +K   LE +   DLIL +
Sbjct: 64  ENIVEEKMKEVTLELLSEGDLILFV 88


>gi|320159766|ref|YP_004172990.1| GTP-binding protein EngA [Anaerolinea thermophila UNI-1]
 gi|319993619|dbj|BAJ62390.1| GTP-binding protein EngA [Anaerolinea thermophila UNI-1]
          Length = 455

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  NAGKSSL N L  ++ AIV+ IPGTTRD +   ++  G  + + DTAGIR  
Sbjct: 196 KIAIVGKPNAGKSSLLNRLVGEERAIVSPIPGTTRDAVDTRIEYNGVPITLIDTAGIRRR 255

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VEK  + R+   +E +D+ LL+
Sbjct: 256 GKIEPGVEKYSVLRSLRAIERSDVALLM 283



 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 8/95 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN LA + +AIV DIPGTTRD L    +  G    I DT GI   D
Sbjct: 6   VALVGRPNVGKSTLFNRLAGEPLAIVDDIPGTTRDRLFATAEWSGVEFDIVDTGGI---D 62

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
               + G  R  L + +A+ I   KEI S+ E++ 
Sbjct: 63  PSAARAG--REPLSIGSAEFI---KEIRSQAELAI 92


>gi|170718421|ref|YP_001783641.1| GTP-binding protein EngA [Haemophilus somnus 2336]
 gi|168826550|gb|ACA31921.1| small GTP-binding protein [Haemophilus somnus 2336]
          Length = 511

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 105/230 (45%), Gaps = 48/230 (20%)

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E D +F+ EED+Q      +L++ L  + + S                KI I+G  N GK
Sbjct: 192 EKDFNFNSEEDIQ------LLDEALVEEQEESED-----------KNIKIAIVGRPNVGK 234

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289
           S+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+   +   VEK  +
Sbjct: 235 STLTNRILGEDRVVVYDLPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLTVEKFSV 294

Query: 290 KRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFI-------GTKSDLYST 334
            +T   +++A++ILL   I++++ IS        F  N     +       G   D+   
Sbjct: 295 IKTLQAIQDANVILLT--IDARQGISDQDLSLLGFILNTGRSLVIVVNKWDGLNQDIKDQ 352

Query: 335 YTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              E D           H IS+  G G+  L + IK   +   KK+  S+
Sbjct: 353 VKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATKKMTTSL 402



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 18/163 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD         GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAHFNGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDL- 331
           + VE++  +++ L +E AD++L L          ++   + +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADVGIAQYLRKRQNKTTVLVANKTDGI 125

Query: 332 -YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKF 366
              ++  E+  L       I++  G G+  L+ K+   +++K 
Sbjct: 126 DADSHCAEFYQLGLGEIEKIAASQGRGISALMEKVLPPVADKL 168


>gi|218680771|ref|ZP_03528668.1| tRNA modification GTPase TrmE [Rhizobium etli CIAT 894]
          Length = 77

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 54/78 (69%), Gaps = 1/78 (1%)

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
           + +F  L  +IPS  RH   L++ +  L+ A++++ D  L++  E LR+A+  LGKITG 
Sbjct: 1   AERFGALSMAIPSRTRHKDSLAKCLLALD-AAISQIDVNLELRTEQLRVAAEFLGKITGR 59

Query: 423 VDVEQLLDIIFSKFCIGK 440
           VDVEQLL +IFS+FCIGK
Sbjct: 60  VDVEQLLGVIFSEFCIGK 77


>gi|113461468|ref|YP_719537.1| GTP-binding protein EngA [Haemophilus somnus 129PT]
 gi|112823511|gb|ABI25600.1| GTP-binding protein [Haemophilus somnus 129PT]
          Length = 511

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 105/230 (45%), Gaps = 48/230 (20%)

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E D +F+ EED+Q      +L++ L  + + S                KI I+G  N GK
Sbjct: 192 EKDFNFNSEEDIQ------LLDEALVEEQEESED-----------KNIKIAIVGRPNVGK 234

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289
           S+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+   +   VEK  +
Sbjct: 235 STLTNRILGEDRVVVYDLPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLTVEKFSV 294

Query: 290 KRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFI-------GTKSDLYST 334
            +T   +++A++ILL   I++++ IS        F  N     +       G   D+   
Sbjct: 295 IKTLQAIQDANVILLT--IDARQGISDQDLSLLGFILNTGRSLVIVVNKWDGLNQDIKDQ 352

Query: 335 YTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              E D           H IS+  G G+  L + IK   +   KK+  S+
Sbjct: 353 VKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATKKMTTSL 402



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD         GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAHFNGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIEEADIVLFL 89


>gi|293604545|ref|ZP_06686950.1| GTP-binding protein EngA [Achromobacter piechaudii ATCC 43553]
 gi|292817126|gb|EFF76202.1| GTP-binding protein EngA [Achromobacter piechaudii ATCC 43553]
          Length = 454

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 33/189 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N L  ++  I  D+PGTTRD + ID D +G    + DTAG+R+ 
Sbjct: 190 KLAIVGRPNVGKSTLINTLMGEERVIAFDLPGTTRDAIEIDFDRDGRRYTLIDTAGLRKR 249

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
             +   VEK  + +T   +E ++++LL+  +++  EIS        F+            
Sbjct: 250 GKVFEAVEKFSVIKTLQAIEASNVVLLM--LDAHTEISEQDAHIAGFVLETGRAVVVAIN 307

Query: 338 EYD--------------------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           ++D                          H IS+  G+G++ L+  I S  +  F KL  
Sbjct: 308 KWDGLDGEEKERIEREFQRKLRFLSFARVHTISALRGQGIKPLLKSINSAHAAAFAKL-- 365

Query: 372 SIPSHKRHL 380
           S P   R L
Sbjct: 366 STPKLTREL 374



 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 17/93 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS----DTAGI 277
           + ++G  N GKS+LFN L +   A+V D  G TRD        EG + +I     DT G 
Sbjct: 7   VALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHY----GEGRVGEIPFIAIDTGGF 62

Query: 278 RETDDIVEKEGI-----KRTFLEVENADLILLL 305
               + V K+GI     ++T   +  AD+++ L
Sbjct: 63  ----EPVAKDGILLEMARQTRQAIAEADVVVFL 91


>gi|94986202|ref|YP_605566.1| GTP-binding protein EngA [Deinococcus geothermalis DSM 11300]
 gi|166198711|sp|Q1IWI7|DER_DEIGD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|94556483|gb|ABF46397.1| Small GTP-binding protein domain [Deinococcus geothermalis DSM
           11300]
          Length = 441

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL NA+ + + AIV D PGTTRD L ++ +  G    + DTAGIR+ 
Sbjct: 174 RISLIGRPNVGKSSLLNAITQSERAIVADQPGTTRDSLDVEWNYGGQRFVLVDTAGIRKK 233

Query: 281 DDI-VEKEGIKRTFLEVENADLILLL 305
            D  +E+  I+R+   +E +D+I L+
Sbjct: 234 PDTAIEEYAIQRSEAAIERSDIIWLV 259



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSLFN L  +  A+V D PG TRD     +    + + + DT G+   
Sbjct: 3   KVAIVGRPNVGKSSLFNRLVGRREAVVADFPGVTRDAKEGLMLYHNHRIVLVDTGGLWSG 62

Query: 281 DD 282
           D+
Sbjct: 63  DE 64


>gi|313678873|ref|YP_004056613.1| ribosome-associated GTPase EngA [Mycoplasma bovis PG45]
 gi|312950564|gb|ADR25159.1| ribosome-associated GTPase EngA [Mycoplasma bovis PG45]
          Length = 436

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 66/99 (66%), Gaps = 5/99 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  N+GKSSL NA+  ++ +IV+DI GTTRD +   ++L G+ ++I DTAGI +
Sbjct: 172 FKLSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDSVKSVVELRGHKIEIIDTAGITK 231

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               DD VE   +KR    ++ +DL ++L  I+S +E++
Sbjct: 232 KSKIDDTVEHLALKRAMSSLDESDLSIVL--IDSTRELA 268



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  K  +I  D PG TRD L       G  + + DT GI+   
Sbjct: 6   IAIIGKPNVGKSTLFNRLVGKRSSITFDRPGVTRDRLYESFMWNGKEINVIDTGGIQIEK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + + + +  + ++ A++++ +
Sbjct: 66  KDFQDQILIQAKIAIQEANVVIFI 89


>gi|52424789|ref|YP_087926.1| GTP-binding protein EngA [Mannheimia succiniciproducens MBEL55E]
 gi|52306841|gb|AAU37341.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 507

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 27/180 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 220 KIAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSVYIPMERDGQQYTIIDTAGVRKR 279

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI-----DFIFIGTKS 329
             +   VEK  + +T   +++A+++LL    +E  S +++S    I       + +  K 
Sbjct: 280 GKVHLSVEKFSVIKTLQAIQDANVVLLTVDAREGISDQDLSLLGFILNAGRSLVIVVNKW 339

Query: 330 DLYSTYTE-----EYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           D  S YT+     E D           H IS+  G G+  L + ++   +   KK+  S+
Sbjct: 340 DGLSQYTKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVQEAYACATKKMTTSM 399



 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 18/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANISGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDL- 331
           + VE++  +++ L +E AD++L L          +I   + +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLTPADIGIAQYLRQRQNKITVVVANKTDGI 125

Query: 332 -YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFK 367
              ++  E+  L       I++  G G+ +L+  + + L+ K K
Sbjct: 126 DADSHCAEFYQLGLGEIAQIAASQGRGVTQLMEDVLAPLAEKMK 169


>gi|312796097|ref|YP_004029019.1| GTP-binding protein [Burkholderia rhizoxinica HKI 454]
 gi|312167872|emb|CBW74875.1| GTP-binding protein [Burkholderia rhizoxinica HKI 454]
          Length = 444

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 65/101 (64%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + ID + +G    + DTAG+
Sbjct: 177 HGVKIAIVGRPNVGKSTLVNALLGEERVIAFDLPGTTRDSIYIDFERQGRPYTLIDTAGL 236

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R+   +   VEK  + +T   + +A++++LL  ++++++IS
Sbjct: 237 RKRGKVFEAVEKFSVVKTLQSIADANVVILL--LDARQDIS 275



 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFV 89


>gi|213649049|ref|ZP_03379102.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 174

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 21/176 (11%)

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLY 332
           VE+ GI+R + E+E AD +L + +  +   +             PKN+    +  K+D+ 
Sbjct: 1   VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADIT 60

Query: 333 STY---TEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
                 +E   H    +S+ TGEG++ L N +K  +      +     + +RHL  L++ 
Sbjct: 61  GETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEA 119

Query: 387 VRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +LE   A L     G +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 120 ANHLEQGKAQLLGAWAG-ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 174


>gi|325972629|ref|YP_004248820.1| GTP-binding protein engA [Spirochaeta sp. Buddy]
 gi|324027867|gb|ADY14626.1| GTP-binding protein engA [Spirochaeta sp. Buddy]
          Length = 514

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           KI ILG  N GKS+L N L  KD++IV+DI GTTRDV+    + +G    + DTAGIR  
Sbjct: 194 KIAILGKPNTGKSTLTNLLVGKDISIVSDIAGTTRDVVMGSFNYKGSDFTVLDTAGIRRK 253

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + D+ VE   + R    ++ AD++LL+
Sbjct: 254 SKVDEDVEYYSVNRAIKTIDEADVVLLM 281



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 20/160 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + I+G  N GKS+LFN L  K  AI    PG TRD++     L  + V + D+ G++   
Sbjct: 22  VSIIGRPNVGKSTLFNRLIGKRRAITDPTPGVTRDLIPERWLLGNHPVTLIDSGGVKVDR 81

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILL-LKEINSKK----EISFPKNIDFIFIGTKSD-- 330
              DD+V ++ +  + LE+ +A + ++   E+ ++     E   P     + +  K D  
Sbjct: 82  DSMDDLVAQKSL--SLLELSDAIVFMMDCTEVTAEDRELLEYLRPFTEKIVLVVNKVDDP 139

Query: 331 -----LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILS 363
                L+  Y   Y  +  IS+  G G+EEL + +  +L+
Sbjct: 140 KRENLLWEYYEYGYQRILGISAAHGLGIEELEDTLLGMLN 179


>gi|297180284|gb|ADI16503.1| predicted GTPases [uncultured bacterium HF4000_05M23]
          Length = 440

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ I G  NAGKS+LFNALA +D AIV+ +PGTTRD L    D EG  +   DTAG+R  
Sbjct: 179 RVAIAGRPNAGKSALFNALAGEDRAIVSPVPGTTRDTLDSQFDFEGTRITFLDTAGLRRR 238

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + +  +EK    RT   +E + + +L+
Sbjct: 239 GKAEAGIEKYSAIRTIGAIERSYVSILV 266



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           I I+G  N GKS+LFN LA + +AIV+DIPGTTRD ++ID +   +   + DTAG+  R 
Sbjct: 6   IAIIGRPNVGKSTLFNRLAGRRIAIVSDIPGTTRDRVSIDAEWGRHRYLLVDTAGVEDRP 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN 309
            + ++  +  K+  + +  AD I+   ++N
Sbjct: 66  HNALLWDDIKKQVEIALNQADGIIFTVDVN 95


>gi|159900085|ref|YP_001546332.1| GTP-binding protein EngA [Herpetosiphon aurantiacus ATCC 23779]
 gi|238687093|sp|A9B567|DER_HERA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|159893124|gb|ABX06204.1| small GTP-binding protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 455

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L ++I  H+  G+  E   N  KI I+G  N GKSSL N L  ++  +V++IPGTTRD +
Sbjct: 162 LLDEIVRHLPAGQEEEEDDNSLKIAIVGRPNVGKSSLLNKLVGEERVVVSNIPGTTRDSI 221

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
              L  +G  + + DTAGIR    I   +E+  + RT   +E   + L+L
Sbjct: 222 DTKLTYKGIPITLIDTAGIRRRGSIEQGIERYSVLRTMKAIERCHIALIL 271



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 7/94 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  +  AI+ D  GTTRD    +    G +  I DTAG+   D
Sbjct: 6   VAIVGRPNVGKSTLFNKLIGERRAIIADEAGTTRDRQYGETIWNGRVFTIVDTAGLLVGD 65

Query: 282 D---IVEKEGIKRTF----LEVENADLILLLKEI 308
           D   +   E ++RT     L ++ AD+I+ + ++
Sbjct: 66  DDPNLPLAEIVRRTHQQAQLAIDEADVIVFMVDV 99


>gi|270308559|ref|YP_003330617.1| GTP-binding protein [Dehalococcoides sp. VS]
 gi|270154451|gb|ACZ62289.1| GTP-binding protein [Dehalococcoides sp. VS]
          Length = 441

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  K+ ++G +N GKS+L N    ++ +IV++IPGTTRD +   LD  G  V + DTAGI
Sbjct: 178 NSVKLALVGRANVGKSTLLNTFLGQERSIVSNIPGTTRDAIDTPLDFNGTNVLLIDTAGI 237

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R    +   VEK  + R    V+ AD++LL+
Sbjct: 238 RRRGKVESGVEKYSVLRALKAVDRADVVLLV 268



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           I I+G  N GKS+L N LA K++AI  D+PGTTRD L   +      + + DT G+  + 
Sbjct: 8   IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFTTVSWLDRKLIMVDTGGLDPDI 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF--------IFIGTKSD-- 330
           + ++ ++   +  L ++ ADL+LL+ ++ +    S  +  D         I +  K+D  
Sbjct: 68  ESVIGQQVNIQISLAIKEADLVLLVVDVKTGLVTSDYEMADIIRRTGKSVILVANKADNL 127

Query: 331 -LYSTYTEEYD------HLISSFTGEGLEELINKI 358
            +     E Y        +IS+F G G+ +L++++
Sbjct: 128 KMGQDAAEFYSLGFGEPSVISAFHGNGISDLMDRV 162


>gi|118594978|ref|ZP_01552325.1| GTP-binding protein EngA [Methylophilales bacterium HTCC2181]
 gi|118440756|gb|EAV47383.1| GTP-binding protein EngA [Methylophilales bacterium HTCC2181]
          Length = 474

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 58/94 (61%), Gaps = 3/94 (3%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I +   KI I+G  N GKS+L NAL  ++  IV D  GTTRD +++D D  G    ++DT
Sbjct: 171 IFKGAPKITIVGRPNVGKSTLVNALVGEERFIVFDQAGTTRDAVSVDFDFNGDRFVLTDT 230

Query: 275 AGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           AGIR+   +   VEK  + +T   VE++D+I+L+
Sbjct: 231 AGIRKKGKVFETVEKFSVLKTLAAVESSDVIILV 264



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN L K   A+V D+PG TRD     + +E     + DT G     
Sbjct: 4   VAIVGRPNVGKSSLFNRLTKSRDALVADLPGLTRDRHYGKITIEDAQFILVDTGGFEPKK 63

Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305
            I + K+   +T L ++  D+IL +
Sbjct: 64  KIGIAKKMALQTLLAIDECDVILFV 88


>gi|313673994|ref|YP_004052105.1| ribosome-associated gtpase enga [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940750|gb|ADR19942.1| ribosome-associated GTPase EngA [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 440

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 13/144 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ILG  N GKS+LFN +A + +AI  D+PG TRD+L      EG    + DT G    
Sbjct: 3   KVGILGRPNVGKSTLFNRIAGRRIAITDDMPGVTRDMLETICHWEGKNFLLIDTPGFDLK 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLL---KE-INSKKEISFP----KNIDFIFIGTKSDLY 332
           DDI++KE  K+ F  +E  DL++L+   KE ++   EI       +NI FI +  K D  
Sbjct: 63  DDIIKKEMHKQFFSALEEVDLVILMLDGKEGLHPLDEIVVSMMRERNIPFILVINKID-- 120

Query: 333 STYTEEYDHLISSFTGEGLEELIN 356
              ++E +  ++ F   G++++++
Sbjct: 121 ---SDERELNVAEFYKLGIDDILS 141



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 4/111 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L + I SHI +     I     KIV++G  N GKSSL NA   ++  IVT IPGTTRD +
Sbjct: 153 LLDRIVSHIKEEPENFIENERLKIVVIGRPNMGKSSLINAWLNEERVIVTPIPGTTRDAV 212

Query: 259 TIDLDLEGYLVKISDTAGIRETD----DIVEKEGIKRTFLEVENADLILLL 305
               +  G    + DTAGIR+      D +EK G  R +  +E +D+++ L
Sbjct: 213 DSYFEYNGEKYILIDTAGIRKKSVMFKDRIEKYGYYRAYDSIERSDVVVAL 263


>gi|313680391|ref|YP_004058130.1| ribosome-associated GTPase enga [Oceanithermus profundus DSM 14977]
 gi|313153106|gb|ADR36957.1| ribosome-associated GTPase EngA [Oceanithermus profundus DSM 14977]
          Length = 433

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKSSL NA+  +D  IV+D PGTTRD + ++LD  G    + DTAGIR+ 
Sbjct: 175 RIAIIGRPNAGKSSLLNAILGEDRVIVSDQPGTTRDSIDVELDYGGTRFVLVDTAGIRKR 234

Query: 281 DDI-VEKEGIKRTFLEVENADLILL 304
            +  VE   I+R    ++ AD+ +L
Sbjct: 235 PETAVEHFAIQRAHRVIQEADVAVL 259



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 7/97 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+VI+G  N GKSSL+N L  +  A+V D  G TRD+    ++ E    K+ DT G+   
Sbjct: 3   KVVIVGRPNVGKSSLYNRLLGRRDAVVADEAGVTRDLKEAVVETERGKFKLVDTGGLWSG 62

Query: 281 DDIVE--KEGIKRTFLEVENADLILLLKEINSKKEIS 315
           D      KE + R   E   ADL+L L  ++ + E++
Sbjct: 63  DAWEPKIKEKVDRALAE---ADLVLFL--VDGRAELA 94


>gi|302871345|ref|YP_003839981.1| ribosome-associated GTPase EngA [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574204|gb|ADL41995.1| ribosome-associated GTPase EngA [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 440

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 3/106 (2%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + +++    + EI  N  K+ I+G  N GKSSL N +  ++  IV+DIPGTTRD +    
Sbjct: 159 VVNYLDNVGINEIEENTIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTF 218

Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           + EG  + + DTAG+R    I   VE+  + RT   +E +D+ ++L
Sbjct: 219 EFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIIL 264



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  +  AIV D PG TRD +  + +  G    + DT GI   +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGEAEWRGITFNVIDTGGIEPYS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+ K+  ++    ++ +D+I+ +
Sbjct: 65  EDIILKQMRRQAQFAIDMSDVIIFI 89


>gi|284931171|gb|ADC31109.1| predicted GTPase EngA [Mycoplasma gallisepticum str. F]
          Length = 456

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 95/193 (49%), Gaps = 34/193 (17%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           ++L++I+ LKN  ++   Q    E++       I+G  N GKSSL N L KK+  +V+DI
Sbjct: 154 DLLDEIIRLKNQFANKKEQ----ELVAT---FCIIGKPNVGKSSLLNQLLKKERVLVSDI 206

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL-- 305
           PGTTRD +         L K+ DTAGIR    I   +EK  ++RT   +  + +ILL+  
Sbjct: 207 PGTTRDAIDATFSYNKELYKVIDTAGIRRKGKIETRIEKFSVQRTQQAISRSKMILLMLD 266

Query: 306 --KEINSKKEI----SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
              +++ + E+     +  N+  I +  K DL     ++ D  +  F            K
Sbjct: 267 GSVDLSEQDEVIGGLCYEANLPTIIVVNKWDL----VKKDDKTMELF------------K 310

Query: 360 SILSNKFKKLPFS 372
             + +KFK LP+S
Sbjct: 311 KQIRSKFKYLPWS 323



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 49/85 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+LFN L K  +AIV D PG TRD +  D++      +I DT G+   
Sbjct: 3   KVAIVGKPNVGKSTLFNRLIKNRIAIVDDTPGITRDRIFGDVEWLTKRFQIIDTGGLTTE 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            DI ++   ++    ++ AD+IL +
Sbjct: 63  SDIFQRAIEQQVQFAIDEADIILFV 87


>gi|323526574|ref|YP_004228727.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1001]
 gi|323383576|gb|ADX55667.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1001]
          Length = 445

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 64/101 (63%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D + +G    + DTAG+
Sbjct: 178 HGIKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERQGKPYTLIDTAGL 237

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R    +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 238 RRRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276



 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE +D+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEESDIVVFI 89


>gi|147669843|ref|YP_001214661.1| GTP-binding protein EngA [Dehalococcoides sp. BAV1]
 gi|146270791|gb|ABQ17783.1| small GTP-binding protein [Dehalococcoides sp. BAV1]
          Length = 442

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 3/90 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G +N GKS+L N    +D +IV++IPGTTRD +   LD +G  V + DTAGIR  
Sbjct: 182 KLALVGRTNVGKSTLLNTFLGEDRSIVSNIPGTTRDAIDTPLDFDGTNVLLIDTAGIRRR 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKE 307
             +   VEK  + R    ++ AD++LL+ +
Sbjct: 242 GKVESGVEKYSVLRALKAIDRADVVLLVMD 271



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 22/171 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           I I+G  N GKS+L N LA K++AI  D+PGTTRD L   +      + + DT G+  + 
Sbjct: 9   IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFATVSWLDRRLIMVDTGGLDPDI 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSD-- 330
           + ++ ++   +  L ++ ADL+LL+ ++            +I        I +  K+D  
Sbjct: 69  ESVIGQQVNIQISLAIKEADLVLLVVDVKDGLITPDYEMADIIRRTGKPVILVANKADNL 128

Query: 331 -LYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            +    TE Y        +IS+F G G+ +L++++   L ++    P + P
Sbjct: 129 KMGQEATEFYSLGFGEPAVISAFHGTGISDLMDRVLEELPDQ----PIATP 175


>gi|186476174|ref|YP_001857644.1| GTP-binding protein EngA [Burkholderia phymatum STM815]
 gi|238691310|sp|B2JIU7|DER_BURP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|184192633|gb|ACC70598.1| small GTP-binding protein [Burkholderia phymatum STM815]
          Length = 446

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 66/105 (62%), Gaps = 5/105 (4%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D + +G    + D
Sbjct: 175 EKAQHGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERQGKKYTLID 234

Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           TAG+R+   +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 235 TAGLRKRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 277



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 14/92 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG---YLVKISDTAGIR 278
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  + G   YLV   DT G  
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGGERPYLV--VDTGGF- 61

Query: 279 ETDDIVEKEGI-----KRTFLEVENADLILLL 305
              + V K+GI     ++T   VE +D+I+ +
Sbjct: 62  ---EPVAKDGILFEMARQTRQAVEESDVIVFI 90


>gi|330837623|ref|YP_004412264.1| GTP-binding protein engA [Spirochaeta coccoides DSM 17374]
 gi|329749526|gb|AEC02882.1| GTP-binding protein engA [Spirochaeta coccoides DSM 17374]
          Length = 547

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ +LG  N GKS+L N L  ++V+IV+DIPGTTRDV++ D   +G    I DTAGIR  
Sbjct: 197 KLAVLGKPNTGKSTLTNLLVGQEVSIVSDIPGTTRDVVSGDFLYKGTPFTILDTAGIRRK 256

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + D+ VE   + R    ++ ++++LL+
Sbjct: 257 SKVDEDVEYYSVNRAIKTIDESNVVLLM 284



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  K   I    PG TRD ++    L G+ V + DT G++   
Sbjct: 24  IAIVGRPNTGKSTLFNRLVGKRRMITDPTPGVTRDPVSEHWMLGGHSVMLVDTGGVK--- 80

Query: 282 DIVEKEGIKRTFLE-----VENADLILLLKEINS 310
             +++EG+     E     +E A +++LL E  +
Sbjct: 81  --LDREGLDHLVSEKSLSILERAHVLILLLECTT 112


>gi|170694783|ref|ZP_02885934.1| small GTP-binding protein [Burkholderia graminis C4D1M]
 gi|170140414|gb|EDT08591.1| small GTP-binding protein [Burkholderia graminis C4D1M]
          Length = 445

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 63/101 (62%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D + +G    + DTAG+
Sbjct: 178 RGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERQGKPYTLIDTAGL 237

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R    +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 238 RRRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276



 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 32/161 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKEINSKKEISFPKNID------------FIF 324
           + V K+GI     ++T   VE +D+++ +  ++ +  ++ P++              F+ 
Sbjct: 61  EPVAKDGILHEMARQTRQAVEESDIVVFI--VDGRNGLA-PQDKSIADYLRKTGRPIFLV 117

Query: 325 IGTKSDL-YSTYTEEYDHL-------ISSFTGEGLEELINK 357
           +     + YST   ++  L       IS+  G+G+ E+IN+
Sbjct: 118 VNKAEGMKYSTVAADFYELGLGDPRAISAAHGDGVTEMINE 158


>gi|157364503|ref|YP_001471270.1| small GTP-binding protein [Thermotoga lettingae TMO]
 gi|166920104|sp|A8F7S2|DER_THELT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157315107|gb|ABV34206.1| small GTP-binding protein [Thermotoga lettingae TMO]
          Length = 435

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSLFNAL   D A VT +PGTTRD +   +++ G    + DTAG+R  
Sbjct: 179 KIAIVGKPNVGKSSLFNALLNMDRATVTPVPGTTRDPVDEMIEINGKKYILVDTAGMRRK 238

Query: 281 DDI----VEKEGIKRTFLEVENADLILLL 305
             I    +E+  I RT   +++AD++LL+
Sbjct: 239 SRIERKTIEQFSISRTIDTIQSADVVLLV 267



 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIRE 279
           +VI G +N GKS+LFN L  +  AI   I G TRD++   +  +   +L  + DT G+ E
Sbjct: 4   VVIAGRANVGKSTLFNRLIGRRKAITEKIEGVTRDIIKGLVVYNETSFL--LYDTCGVFE 61

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            T D V      + F     ADLIL +
Sbjct: 62  STRDPVLLAMRDKAFEAFRKADLILFV 88


>gi|21231435|ref|NP_637352.1| GTP-binding protein EngA [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768511|ref|YP_243273.1| GTP-binding protein EngA [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991681|ref|YP_001903691.1| GTP-binding protein EngA [Xanthomonas campestris pv. campestris
           str. B100]
 gi|26006714|sp|Q8P979|DER_XANCP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|81305517|sp|Q4UUM0|DER_XANC8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|229807529|sp|B0RT56|DER_XANCB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|21113105|gb|AAM41276.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66573843|gb|AAY49253.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733441|emb|CAP51642.1| GTP-binding protein, probable [Xanthomonas campestris pv.
           campestris]
          Length = 465

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 84/162 (51%), Gaps = 17/162 (10%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209
           W+ KL      +   +D ++EE V++  S+   +D++ L             ++ + + +
Sbjct: 106 WLRKLARPTVLVINKIDGTDEESVRSEFSRYGFSDVVALSAAHRQGIDDLLEEVGARLPE 165

Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              GE++ N     +I  +G  N GKS+L N L  ++  I +++PGTTRD + +DL+ +G
Sbjct: 166 EGAGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDG 225

Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
              ++ DTAG+R   + ++ VEK    +T   +E   + +L+
Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267



 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + ++G  N GKS++FNAL +   A+V D PG TRD
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39


>gi|307729253|ref|YP_003906477.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1003]
 gi|307583788|gb|ADN57186.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1003]
          Length = 445

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 63/101 (62%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D + +G    + DTAG+
Sbjct: 178 RGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERQGKPYTLIDTAGL 237

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R    +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 238 RRRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276



 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE +D+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEESDIVVFI 89


>gi|161524640|ref|YP_001579652.1| GTP-binding protein EngA [Burkholderia multivorans ATCC 17616]
 gi|189350604|ref|YP_001946232.1| GTP-binding protein EngA [Burkholderia multivorans ATCC 17616]
 gi|238687037|sp|A9AH00|DER_BURM1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|160342069|gb|ABX15155.1| small GTP-binding protein [Burkholderia multivorans ATCC 17616]
 gi|189334626|dbj|BAG43696.1| GTP-binding protein [Burkholderia multivorans ATCC 17616]
          Length = 445

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 63/100 (63%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RSGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|55981360|ref|YP_144657.1| GTP-binding protein EngA [Thermus thermophilus HB8]
 gi|55772773|dbj|BAD71214.1| GTP-binding protein [Thermus thermophilus HB8]
          Length = 431

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 59/88 (67%), Gaps = 1/88 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  NAGKSSL NA+  ++  IV++ PGTTRD + ++    G    + DTAGIR
Sbjct: 173 GIRLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDAIDVEFFFGGQRFVLVDTAGIR 232

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLL 305
           +  +++VE+  I+R+   ++ AD++LL+
Sbjct: 233 KRPENLVEELAIRRSLRAMDEADVVLLV 260



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 5/87 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGI 277
           +K+VI+G  N GKSSLFN L KK  A+V D+PG TRD+    ++ D   +L  + DT G+
Sbjct: 2   HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFL--LVDTGGL 59

Query: 278 RETDDIVEKEGIKRTFLEVENADLILL 304
             + D  EK+  ++    +E+A+++L 
Sbjct: 60  -WSGDKWEKKIQEKVDRALEDAEVVLF 85


>gi|148656272|ref|YP_001276477.1| GTP-binding protein EngA [Roseiflexus sp. RS-1]
 gi|148568382|gb|ABQ90527.1| small GTP-binding protein [Roseiflexus sp. RS-1]
          Length = 493

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 29/181 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSL N L  ++ ++V+D+PGTTRD +   ++++G    + DTAGIR  
Sbjct: 184 KIAIVGRPNVGKSSLLNRLIGQERSVVSDVPGTTRDSIDTPVEIDGIKALLIDTAGIRRR 243

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKNID 321
             I   +E+  + R    +E AD+ LLL +                + S K ++   N  
Sbjct: 244 GKIERGLERYSVMRALRAIERADVALLLIDATEGVTAQDTHIAGMILESLKGVAILVNKW 303

Query: 322 FIFI--GTKSDLYSTYTEE------YDHL--ISSFTGEGLEELINKIKSILSNKFKKLPF 371
            + +   T  D +S +  E      Y  L  IS+ TG+ +++++     I SN+ +++P 
Sbjct: 304 DLVVKDNTTFDAFSRHVREAFKFISYAPLLFISAKTGQRVDKVLPLALEIASNRQRRIPT 363

Query: 372 S 372
           S
Sbjct: 364 S 364



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+LFN L  +  AIV DIPGTTRD L  D +  G +  + DTAG+
Sbjct: 5   VALVGRPNVGKSTLFNRLIGERRAIVEDIPGTTRDRLYGDTEWNGRVFTVVDTAGL 60


>gi|294340463|emb|CAZ88844.1| GTPase involved in ribosome synthesis and maintenance [Thiomonas
           sp. 3As]
          Length = 465

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 27/177 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I G  N GKS+L NAL  ++  I  D+PGTTRD + +  + +G    + DTAG+R  
Sbjct: 201 RLAIAGRPNVGKSTLVNALVGEERVIAFDMPGTTRDAIEVPFERDGRKFILIDTAGLRRK 260

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +   VEK  + +T   +E A++++LL +               +       +    K 
Sbjct: 261 GKVFEAVEKFSVIKTLQAIEQANVVVLLLDATEGVSDQDAHIASFAVEAGRALVLAANKW 320

Query: 330 DLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
           D   TY  E                  H IS+ TG GL  L+  + +  +  ++KLP
Sbjct: 321 DAVDTYGRERLMVAIRQRLPFVSFAKFHSISARTGSGLNGLMKSVVAAHAAAYRKLP 377



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN + +   AIV D+PG TRD     L +    V + DT G     
Sbjct: 5   VSLVGRPNVGKSTLFNRMTRSRDAIVADMPGLTRDRHYGMLRMADRPVIVVDTGGFEPVV 64

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEINS 310
           D  +  +  ++T   +  +DL++ L ++ +
Sbjct: 65  DTGIVHQMARQTRQAIAESDLVVFLVDLRT 94


>gi|57233850|ref|YP_182104.1| GTP-binding protein EngA [Dehalococcoides ethenogenes 195]
 gi|57224298|gb|AAW39355.1| GTP-binding protein [Dehalococcoides ethenogenes 195]
          Length = 441

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  K+ ++G +N GKS+L N    ++ +IV++IPGTTRD +   L+  G  V + DTAGI
Sbjct: 178 NSVKLALVGRTNVGKSTLLNTFMGQERSIVSNIPGTTRDAIDTPLNFNGTNVLLIDTAGI 237

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R    +   VEK  + R    V+ AD++LL+
Sbjct: 238 RRRGKVESGVEKYSVLRALKAVDRADIVLLV 268



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 22/171 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           I I+G  N GKS+L N LA K++AI  D+PGTTRD L   +      + + DT G+  + 
Sbjct: 8   IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFTTVSWLDRRLIMVDTGGLDPDL 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----------------KKEISFPKNIDFI 323
           + I+ ++   +  L ++ ADL+LL+ ++ +                 K  I      D +
Sbjct: 68  ESIIGQQVNIQISLAIKEADLVLLVVDVKAGLITPDYEMADIIRRTGKPVILVANKADNL 127

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            +G ++  + +       +IS+F G G+ +L++++   L ++    P + P
Sbjct: 128 KMGQEAAEFYSLGFGEPSVISAFHGSGISDLMDRVLEELPDQ----PIATP 174


>gi|296136228|ref|YP_003643470.1| ribosome-associated GTPase EngA [Thiomonas intermedia K12]
 gi|295796350|gb|ADG31140.1| ribosome-associated GTPase EngA [Thiomonas intermedia K12]
          Length = 457

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 27/177 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I G  N GKS+L NAL  ++  I  D+PGTTRD + +  + +G    + DTAG+R  
Sbjct: 193 RLAIAGRPNVGKSTLVNALVGEERVIAFDMPGTTRDAIEVPFERDGRKFILIDTAGLRRK 252

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +   VEK  + +T   +E A++++LL +               +       +    K 
Sbjct: 253 GKVFEAVEKFSVIKTLQAIEQANVVVLLLDATEGVSDQDAHIASFAVEAGRALVLAANKW 312

Query: 330 DLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
           D   TY  E                  H IS+ TG GL  L+  + +  +  ++KLP
Sbjct: 313 DAVDTYGRERLMVAIRQRLPFVSFAKFHSISARTGSGLNGLMKSVIAAHAAAYRKLP 369



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN + +   AIV D+PG TRD     L +    V + DT G     
Sbjct: 5   VSLVGRPNVGKSTLFNRMTRSRDAIVADMPGLTRDRHYGMLRMADRPVIVVDTGGFEPVV 64

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEINS 310
           D  +  +  ++T   +  +DL++ L ++ +
Sbjct: 65  DTGIVHQMARQTRQAIAESDLVVFLVDLRT 94


>gi|167957385|ref|ZP_02544459.1| small GTP-binding protein [candidate division TM7 single-cell
           isolate TM7c]
 gi|169835713|ref|ZP_02868901.1| small GTP-binding protein [candidate division TM7 single-cell
           isolate TM7a]
          Length = 473

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ ++G  N GKS+LFNALA K  A+V +I GTTRD+  + +      +++ DTAGIR  
Sbjct: 177 RVALIGRPNVGKSTLFNALAGKQQALVANIAGTTRDINRVQVRYNQNTIELLDTAGIRRQ 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
            + +  +EK  + RT   +E +D+ LLL ++N
Sbjct: 237 GKQETGIEKFSVLRTLQAIEESDICLLLLDVN 268



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 5/102 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKSSLFN + +   AIV    GTTRD +   ++ + +   + DTAG+++ +
Sbjct: 8   VALIGQANVGKSSLFNRMVRAQQAIVAREAGTTRDSVIGKVEYKKHQFWLVDTAGLKDPN 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           D  E     +     E+AD+IL++ +      I +P + D I
Sbjct: 68  DDFEATIQDQITEASESADVILVVVD-----SIMYPSDQDKI 104


>gi|78047628|ref|YP_363803.1| GTP-binding protein EngA [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|123743974|sp|Q3BTW0|DER_XANC5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78036058|emb|CAJ23749.1| GTP-binding protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 465

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 17/162 (10%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209
           W+ KL      +   +D ++EE V++  ++   +D++ L            +++ + + +
Sbjct: 106 WLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLDEVGARLPE 165

Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              GE++ N     +I  +G  N GKS+L N L  ++  I +++PGTTRD + +DL+ +G
Sbjct: 166 EGAGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDG 225

Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
              ++ DTAG+R   + ++ VEK    +T   +E   + +L+
Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + ++G  N GKS++FNAL +   A+V D PG TRD
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39


>gi|294625013|ref|ZP_06703663.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294666614|ref|ZP_06731853.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292600688|gb|EFF44775.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292603634|gb|EFF47046.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 465

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 17/162 (10%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209
           W+ KL      +   +D ++EE V++  ++   +D++ L            +++ + + +
Sbjct: 106 WLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLDEVGARLPE 165

Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              GE++ N     +I  +G  N GKS+L N L  ++  I +++PGTTRD + +DL+ +G
Sbjct: 166 EGAGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDG 225

Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
              ++ DTAG+R   + ++ VEK    +T   +E   + +L+
Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + ++G  N GKS++FNAL +   A+V D PG TRD
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39


>gi|21242765|ref|NP_642347.1| GTP-binding protein EngA [Xanthomonas axonopodis pv. citri str.
           306]
 gi|325927625|ref|ZP_08188854.1| small GTP-binding protein domain/GTP-binding hypothetical protein
           [Xanthomonas perforans 91-118]
 gi|26006715|sp|Q8PKY6|DER_XANAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|21108245|gb|AAM36883.1| GTP-binding protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|325541992|gb|EGD13505.1| small GTP-binding protein domain/GTP-binding hypothetical protein
           [Xanthomonas perforans 91-118]
          Length = 465

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 17/162 (10%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209
           W+ KL      +   +D ++EE V++  ++   +D++ L            +++ + + +
Sbjct: 106 WLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLDEVGARLPE 165

Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              GE++ N     +I  +G  N GKS+L N L  ++  I +++PGTTRD + +DL+ +G
Sbjct: 166 EGAGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDG 225

Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
              ++ DTAG+R   + ++ VEK    +T   +E   + +L+
Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + ++G  N GKS++FNAL +   A+V D PG TRD
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39


>gi|309791206|ref|ZP_07685738.1| small GTP-binding protein [Oscillochloris trichoides DG6]
 gi|308226768|gb|EFO80464.1| small GTP-binding protein [Oscillochloris trichoides DG6]
          Length = 525

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 31/179 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSL N L  ++ ++V+ IPGTTRD +  ++   G  V + DTAGIR + 
Sbjct: 250 IAIVGRPNVGKSSLLNKLLGQERSVVSAIPGTTRDSIDTEITFHGERVTLIDTAGIRRSG 309

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKNIDF 322
            I   +EK  + RT   +E  D+ LLL +                +++KK I+   N  +
Sbjct: 310 RIEQGIEKYSVMRTLRAIERCDVALLLIDAEEGITAQDTHIAGMVLDAKKGIAILVN-KW 368

Query: 323 IFIGTKSDLYSTYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLP 370
             I   ++ +  Y ++               IS+ +G+ +  +I   + I   + K++P
Sbjct: 369 DVIEKDNETFQEYEDQVRQAFKFIDYAPVLFISALSGQRVSRVIQLAQEIYDQRQKRVP 427



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---R 278
           + ++G  N GKS+ FN L  +  AIV D+PGTTRD +  D    G    + DTAG+    
Sbjct: 71  VALVGRPNVGKSTFFNRLIGERRAIVEDMPGTTRDRIYGDTFWNGRDFTVVDTAGLLFGG 130

Query: 279 ETDDIVEKEGIKRTF----LEVENADLILLL 305
           +  ++   E  +RT     L +E AD ++ +
Sbjct: 131 DDPNLPVAEMSRRTREQANLAIEEADAVIFM 161


>gi|254252261|ref|ZP_04945579.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158]
 gi|124894870|gb|EAY68750.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158]
          Length = 445

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GVKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSIADANVVILL--LDAQQDIS 276



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|269792400|ref|YP_003317304.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100035|gb|ACZ19022.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 443

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 3/90 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ ++G  N GKSSLFN L  ++ A+V+ IPGTTRD + +D+ L    V++ DTAG+R  
Sbjct: 177 KLSVVGRPNVGKSSLFNRLIGQERAVVSPIPGTTRDTVDVDVRLGDVDVRLMDTAGMRRK 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKE 307
              DD +E   + RT   ++ +D+ L+L +
Sbjct: 237 SRVDDPLEYYSVVRTLKAIDRSDVSLVLMD 266



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 35/56 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G  N GKSSLFN L  + +AIV DIPG TRD L  + + +G    + DT GI
Sbjct: 4   VAIVGRPNVGKSSLFNRLIGRKLAIVEDIPGVTRDRLYAETEWDGKRFYLVDTGGI 59


>gi|222528757|ref|YP_002572639.1| GTP-binding protein EngA [Caldicellulosiruptor bescii DSM 6725]
 gi|222455604|gb|ACM59866.1| small GTP-binding protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 440

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 3/106 (2%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + +++++  + EI     K+ I+G  N GKSSL N +  ++  IV+DIPGTTRD +    
Sbjct: 159 VVNYLNKEGINEIEEGTIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTF 218

Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           + EG  + + DTAG+R    I   VE+  + RT   +E +D+ ++L
Sbjct: 219 EFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIIL 264



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  +  AIV D PG TRD +  + +  G    + DT GI   +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPYS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+ K+  ++    ++ +D+I+ +
Sbjct: 65  EDIILKQMRRQAQFAIDMSDVIIFM 89


>gi|46199327|ref|YP_004994.1| GTP-binding protein EngA [Thermus thermophilus HB27]
 gi|46196952|gb|AAS81367.1| GTP-binding protein [Thermus thermophilus HB27]
          Length = 431

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 1/88 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  NAGKSSL NA+  ++  IV++ PGTTRD + ++    G    + DTAGIR
Sbjct: 173 GIRLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDAIDVEFFFGGQRFVLVDTAGIR 232

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLL 305
           +  + +VE+  I+R+   ++ AD++LL+
Sbjct: 233 KRPESLVEELAIRRSLRAMDEADVVLLV 260



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 5/87 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGI 277
           +K+VI+G  N GKSSLFN L KK  A+V D+PG TRD+    ++ D   +L  + DT G+
Sbjct: 2   HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFL--LVDTGGL 59

Query: 278 RETDDIVEKEGIKRTFLEVENADLILL 304
             + D  EK+  ++    +E+A+++L 
Sbjct: 60  -WSGDKWEKKIQEKVDRALEDAEVVLF 85


>gi|325524779|gb|EGD02753.1| GTP-binding protein Der [Burkholderia sp. TJI49]
          Length = 445

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276



 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|221198076|ref|ZP_03571122.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2M]
 gi|221204366|ref|ZP_03577383.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2]
 gi|221212773|ref|ZP_03585749.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD1]
 gi|221166986|gb|EED99456.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD1]
 gi|221175223|gb|EEE07653.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2]
 gi|221182008|gb|EEE14409.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2M]
          Length = 445

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|78066578|ref|YP_369347.1| GTP-binding protein EngA [Burkholderia sp. 383]
 gi|123728977|sp|Q39FR3|DER_BURS3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|77967323|gb|ABB08703.1| Small GTP-binding protein [Burkholderia sp. 383]
          Length = 445

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|206560243|ref|YP_002231007.1| GTP-binding protein EngA [Burkholderia cenocepacia J2315]
 gi|238693091|sp|B4EAW5|DER_BURCJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|198036284|emb|CAR52180.1| GTP-binding protein EngA [Burkholderia cenocepacia J2315]
          Length = 445

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276



 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|256827122|ref|YP_003151081.1| small GTP-binding protein domain/GTP-binding hypothetical protein
           [Cryptobacterium curtum DSM 15641]
 gi|256583265|gb|ACU94399.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Cryptobacterium curtum DSM 15641]
          Length = 444

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 56/87 (64%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + I+G  NAGKSSL N L++ D +IV+D+ GTTRD +   +  EG   ++ DTAG+R   
Sbjct: 184 VAIIGRPNAGKSSLTNMLSRNDRSIVSDVAGTTRDAIDTLVAHEGRAYRLVDTAGLRRKS 243

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           + D+ VE  G  R+   ++ AD++LL+
Sbjct: 244 KIDEDVEYYGFVRSMRAIDRADVVLLM 270



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+  N +   D AIV  + G TRD    D D  G+   + DT GI   D
Sbjct: 6   VAVVGRPNVGKSTFVNRIVHSDEAIVHAMRGVTRDRSYHDADWNGHHFTLIDTGGIEMGD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305
           +   +  I+ + F      D+ILLL
Sbjct: 66  EDAFQTSIRNQAFTAARECDVILLL 90


>gi|219850590|ref|YP_002465023.1| GTP-binding protein EngA [Chloroflexus aggregans DSM 9485]
 gi|254783144|sp|B8GAY7|DER_CHLAD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|219544849|gb|ACL26587.1| small GTP-binding protein [Chloroflexus aggregans DSM 9485]
          Length = 449

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 45/189 (23%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N L  K+ ++V+ IPGTTRD +   +   G  + + DTAGIR  
Sbjct: 184 RVAIVGRPNVGKSSLLNRLLGKERSVVSPIPGTTRDPIDTTITYYGEPITLIDTAGIRRA 243

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKNID 321
             I   +EK  + RT   +E  D+ +LL +                I +KK +       
Sbjct: 244 GKIERGIEKYSVLRTLRAIERCDVAMLLVDATEGVTAQDTHIAGMVIEAKKGL------- 296

Query: 322 FIFIGTKSDLYSTYTE---EYDH---------------LISSFTGEGLEELINKIKSILS 363
            I +  K D  +  ++   E++H                IS+ TG+ +  L++  + I +
Sbjct: 297 -ILVVNKWDAITKDSQTYYEFEHRVREAFKFVDYAPIVFISALTGQRVSHLLDYAREIYA 355

Query: 364 NKFKKLPFS 372
            + K++P S
Sbjct: 356 QRQKRIPTS 364



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---R 278
           + I+G  N GKS+ FN L  +  AIV DIPGTTRD L  D    G    + DTAG+    
Sbjct: 6   VAIVGRPNVGKSTFFNRLIGERRAIVEDIPGTTRDRLYGDTFWNGREFTVVDTAGLLFGD 65

Query: 279 ETDDIVEKEGIKRTFLEVENA 299
           E   + E E  +RT ++ E+A
Sbjct: 66  EDPSLPEVEIARRTRVQAEHA 86


>gi|107029013|ref|YP_626108.1| GTP-binding protein EngA [Burkholderia cenocepacia AU 1054]
 gi|116689829|ref|YP_835452.1| GTP-binding protein EngA [Burkholderia cenocepacia HI2424]
 gi|170733168|ref|YP_001765115.1| GTP-binding protein EngA [Burkholderia cenocepacia MC0-3]
 gi|123370031|sp|Q1BGX0|DER_BURCA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166224312|sp|A0K7T2|DER_BURCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238688579|sp|B1JT88|DER_BURCC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|105898177|gb|ABF81135.1| Small GTP-binding protein domain protein [Burkholderia cenocepacia
           AU 1054]
 gi|116647918|gb|ABK08559.1| small GTP-binding protein [Burkholderia cenocepacia HI2424]
 gi|169816410|gb|ACA90993.1| small GTP-binding protein [Burkholderia cenocepacia MC0-3]
          Length = 445

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|209521123|ref|ZP_03269851.1| small GTP-binding protein [Burkholderia sp. H160]
 gi|209498433|gb|EDZ98560.1| small GTP-binding protein [Burkholderia sp. H160]
          Length = 445

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276



 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRAGERPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE +D+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEESDVVVFI 89


>gi|90021085|ref|YP_526912.1| GTP-binding protein EngA [Saccharophagus degradans 2-40]
 gi|123396308|sp|Q21KS9|DER_SACD2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|89950685|gb|ABD80700.1| Small GTP-binding protein domain [Saccharophagus degradans 2-40]
          Length = 471

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 57/90 (63%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I+ + +G    I DTAG+R
Sbjct: 176 GIKLAIVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSIYIEYERDGKAYTIIDTAGVR 235

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305
              +I   VEK  I +T   +++A++++L+
Sbjct: 236 RRKNIKLSVEKFSIVKTLQAIDDANVVILV 265



 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   AIV +  G TRD    +         + DT GI   +
Sbjct: 5   LALVGRPNVGKSTLFNRLTRSRDAIVANFSGLTRDRQYGEATHGDKRFIVVDTGGISGEE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++     ++   +E AD++  +
Sbjct: 65  EGIDSYMAGQSLQAIEEADMVAFI 88


>gi|134295839|ref|YP_001119574.1| GTP-binding protein EngA [Burkholderia vietnamiensis G4]
 gi|166224317|sp|A4JEN6|DER_BURVG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|134138996|gb|ABO54739.1| small GTP-binding protein [Burkholderia vietnamiensis G4]
          Length = 445

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|115351797|ref|YP_773636.1| GTP-binding protein EngA [Burkholderia ambifaria AMMD]
 gi|170702835|ref|ZP_02893684.1| small GTP-binding protein [Burkholderia ambifaria IOP40-10]
 gi|171321331|ref|ZP_02910290.1| small GTP-binding protein [Burkholderia ambifaria MEX-5]
 gi|122323095|sp|Q0BEX1|DER_BURCM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|115281785|gb|ABI87302.1| small GTP-binding protein [Burkholderia ambifaria AMMD]
 gi|170132253|gb|EDT00732.1| small GTP-binding protein [Burkholderia ambifaria IOP40-10]
 gi|171093388|gb|EDT38576.1| small GTP-binding protein [Burkholderia ambifaria MEX-5]
          Length = 445

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276



 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHQMARQTRQAVEEADVVVFI 89


>gi|312128144|ref|YP_003993018.1| ribosome-associated gtpase enga [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778163|gb|ADQ07649.1| ribosome-associated GTPase EngA [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 440

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 3/106 (2%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + +++++  + EI     K+ I+G  N GKSSL N +  ++  IV+DIPGTTRD +    
Sbjct: 159 VVNYLNKEGINEIEEGTIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTF 218

Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           + EG  + + DTAG+R    I   VE+  + RT   +E +D+ ++L
Sbjct: 219 EFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIIL 264



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  +  AIV D PG TRD +  + +  G    + DT GI   +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPYS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+ K+  ++    ++ +D+I+ +
Sbjct: 65  EDIILKQMRRQAQFAIDMSDVIIFM 89


>gi|254248074|ref|ZP_04941395.1| Small GTP-binding protein domain [Burkholderia cenocepacia PC184]
 gi|124872850|gb|EAY64566.1| Small GTP-binding protein domain [Burkholderia cenocepacia PC184]
          Length = 445

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      I DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLIVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|172060768|ref|YP_001808420.1| GTP-binding protein EngA [Burkholderia ambifaria MC40-6]
 gi|238689149|sp|B1YR40|DER_BURA4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|171993285|gb|ACB64204.1| small GTP-binding protein [Burkholderia ambifaria MC40-6]
          Length = 445

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276



 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHQMARQTRQAVEEADVVVFI 89


>gi|295676899|ref|YP_003605423.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1002]
 gi|295436742|gb|ADG15912.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1002]
          Length = 445

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276



 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE +D+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEESDVVVFI 89


>gi|114566850|ref|YP_754004.1| hypothetical protein Swol_1325 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337785|gb|ABI68633.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 441

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSL NAL  ++  IV+D+PGTTRD +      +G    + DTAG+R  
Sbjct: 177 KIAIVGRPNVGKSSLVNALLGEERVIVSDVPGTTRDAIDTPFQFKGQNYLLIDTAGMRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I    E+  + RT   +E AD++L++
Sbjct: 237 SRIKETTERYSVIRTLKAIERADVVLIM 264



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN LA    AIV DIPG TRD L    D  G    I DT GIR  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLAGARKAIVEDIPGVTRDRLYDSSDWNGREFIIIDTGGIRFNE 64

Query: 282 -DIVEKEGIKRTFLEVENADLILLL 305
            DI  +E   +  L +E AD+I+L+
Sbjct: 65  GDIFAREIKLQAELAIEEADVIVLV 89


>gi|261416631|ref|YP_003250314.1| ribosome-associated GTPase EngA [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373087|gb|ACX75832.1| ribosome-associated GTPase EngA [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326129|gb|ADL25330.1| ribosome-associated GTPase EngA [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 475

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           +  ILG  NAGKS+L N L  +D A+V+DIPGTTRD +  D  ++G    ++DTAG+R+ 
Sbjct: 180 RFAILGRPNAGKSTLLNRLLNEDRAVVSDIPGTTRDSIDCDFVVDGQKFVVTDTAGLRKK 239

Query: 280 --TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              +D VE     RT   +  +DL +L+ +     EI 
Sbjct: 240 ARVEDEVEVFSNMRTLESIRRSDLSVLVVDCTRGMEIQ 277



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 19/165 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN +  +  A+V+D  G TRD    +   +G+   + DT G    D
Sbjct: 6   VCIIGRPNVGKSSLFNRILGRRAAVVSDRDGVTRDRHYQNAIYKGHEFTVVDTGGFLPDD 65

Query: 282 --DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKSDL 331
             D++      + F  V  ADL+L + +I    +K +  F + I       I +  KS+L
Sbjct: 66  SIDVLADSVRAQIFNAVNEADLVLFMVDIRVGITKLDQQFARLIRKLDKKVILVANKSEL 125

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFK 367
                E Y+ L         +S+ TG     L++++ S+L    +
Sbjct: 126 QGDRQESYEFLKLGFGQPRTVSALTGYACLSLLDEVVSVLPTPVR 170


>gi|260913735|ref|ZP_05920211.1| ribosome-associated GTPase EngA [Pasteurella dagmatis ATCC 43325]
 gi|260632274|gb|EEX50449.1| ribosome-associated GTPase EngA [Pasteurella dagmatis ATCC 43325]
          Length = 511

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 224 KIAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMERDGQHYTIIDTAGVRKR 283

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 284 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDAREGVSDQDLSL---LGFILNAGRSLVIVV 340

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 341 NKWDGLNQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 400

Query: 371 FSI 373
            S+
Sbjct: 401 TSM 403



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIEEADVVLFL 89


>gi|295106000|emb|CBL03543.1| ribosome-associated GTPase EngA [Gordonibacter pamelaeae 7-10-1-b]
          Length = 438

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + I+G  NAGKSSL N + K D +IV+D+ GTTRD +   ++ +G L  I DTAG+R   
Sbjct: 181 VAIIGRPNAGKSSLTNKMTKGDRSIVSDVAGTTRDAIDTAVEHDGTLYTIVDTAGLRRKS 240

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           + D  VE  G  R    ++ AD+ LL+
Sbjct: 241 QIDQDVEYYGFVRAMRAIDRADVALLV 267



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+  N +A+ D AIV ++ G TRD    + D  G   K+ DT GI   D
Sbjct: 6   VAVVGRPNVGKSTFVNRIAQADEAIVHEMRGVTRDRSYHEADWNGVEFKLVDTGGIEMGD 65

Query: 282 DIVEKEGIKRTFLEVEN-ADLILLL 305
           D   +  I+   +   N AD+++ +
Sbjct: 66  DDAFQGSIRAQAIAGANEADVVIFI 90


>gi|289666002|ref|ZP_06487583.1| GTP-binding protein EngA [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 465

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 17/162 (10%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209
           W+ KL      +   +D ++EE V++  ++   +D++ L             ++++ + +
Sbjct: 106 WLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLEEVAARLPE 165

Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              GE++ N     +I  +G  N GKS+L N L  ++  I +++PGTTRD + +DL+ +G
Sbjct: 166 EGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDG 225

Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
              ++ DTAG+R   + ++ VEK    +T   +E   + +L+
Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + ++G  N GKS++FNAL +   A+V D PG TRD
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39


>gi|257093699|ref|YP_003167340.1| GTP-binding protein EngA [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046223|gb|ACV35411.1| small GTP-binding protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 492

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 31/179 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L NAL  +D  I  D PGTTRD + +D +  G    + DTAG+R  
Sbjct: 177 KVAIVGRPNVGKSTLINALLGEDRVIAFDQPGTTRDAIEVDFERGGKKYTLIDTAGLRRR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG----------T 327
             +   +EK  + +T   VE+A +++L+  ++++++I+        FI            
Sbjct: 237 GRVFETIEKFSVIKTLQAVEDAQVVILV--LDARQDIAEQDAHIAAFIRESGRALVVAVN 294

Query: 328 KSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
           K D   +Y  E                  H +S+  G+GLE L   + +        LP
Sbjct: 295 KWDGLDSYVREQIKGALEGQLGFIDFARFHYVSALRGQGLEPLFRSVDAAYRAAIADLP 353



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IV++G  N GKS+LFN L +   A+V D+PG TRD       L      + DT G     
Sbjct: 5   IVLVGRPNVGKSTLFNRLTRTRDALVADLPGLTRDRHYGHGKLGSKPYLVIDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + + K+GI     ++T   ++ AD+++L+
Sbjct: 61  EPLAKDGIMYHMARQTEQAIDEADVVILV 89


>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254547822|gb|ACT56895.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 470

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 88/181 (48%), Gaps = 23/181 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y I I+G  N GKS+LFN L KK +A+V + PG TRD L     + G +  I DTAGI +
Sbjct: 3   YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62

Query: 280 TDDI-VEKEGIKRTFLEVENADLILLLKEINSKKEI--------SF--PKNIDFIFIGTK 328
             +  + K+   +T L +  A LIL L  I+SK  I        SF   KNI  I +  K
Sbjct: 63  GKNCSIAKQMNDQTELAINEAHLILFL--IDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120

Query: 329 SD-------LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKR 378
            D        Y  Y+ ++  +  IS+    G  EL + I  I   K+   P   I ++KR
Sbjct: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180

Query: 379 H 379
           +
Sbjct: 181 N 181



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS+L N L   +  +     G TRD ++I  + + + ++I DTAG+R+ 
Sbjct: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E++ +K++   V   +  ++L
Sbjct: 265 SRITESLEQKTVKKSMQSVRTCETTIVL 292


>gi|156743465|ref|YP_001433594.1| GTP-binding protein EngA [Roseiflexus castenholzii DSM 13941]
 gi|156234793|gb|ABU59576.1| small GTP-binding protein [Roseiflexus castenholzii DSM 13941]
          Length = 494

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSL N L  ++ ++V+DIPGTTRD +   +++ G    + DTAGIR  
Sbjct: 184 KIAIVGRPNVGKSSLLNRLIGQERSVVSDIPGTTRDSIDTPIEIGGVRALLIDTAGIRRR 243

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  + R    +E AD+ LLL
Sbjct: 244 GKIDRGLERYSVMRALRAIERADVALLL 271



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+LFN L  +  AIV DIPGTTRD L  D +  G +  + DTAG+
Sbjct: 5   VALVGRPNVGKSTLFNRLIGERRAIVEDIPGTTRDRLYGDTEWNGRVFTVVDTAGL 60


>gi|58426746|gb|AAW75783.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 490

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 93/179 (51%), Gaps = 21/179 (11%)

Query: 147 MEGMSGELSSLYGQ---WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK--- 200
           ++G  GE SSL  +   W+ KL      +   +D ++EE V++  ++   +D++ L    
Sbjct: 115 VDGREGE-SSLDDEILAWLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAH 173

Query: 201 --------NDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
                    ++ + + +   GE++ N     +I  +G  N GKS+L N L  ++  I ++
Sbjct: 174 RQGIDELLEEVGARLPEEGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASE 233

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           +PGTTRD + +DL+ +G   ++ DTAG+R   + ++ VEK    +T   +E   + +L+
Sbjct: 234 VPGTTRDSIAVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIERCQVAVLM 292



 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS++FNAL +   A+V D PG TRD    V  +D   E     + DT GI
Sbjct: 30  VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLD---EQQPFIVVDTGGI 86

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305
              +D +     ++       ADL+L +
Sbjct: 87  AGDEDGLAGATARQARAAAGEADLVLFV 114


>gi|326204998|ref|ZP_08194849.1| ribosome-associated GTPase EngA [Clostridium papyrosolvens DSM
           2782]
 gi|325984864|gb|EGD45709.1| ribosome-associated GTPase EngA [Clostridium papyrosolvens DSM
           2782]
          Length = 441

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 56/88 (63%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N++  ++  IV++IPGTTRD +   ++++G      DTAGIR+ 
Sbjct: 179 KVAVVGKPNAGKSSLINSILGENRVIVSNIPGTTRDAIDTHVEMDGQKYTFIDTAGIRKR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +EK    R++  +E AD+ L++
Sbjct: 239 SKINETIEKYSTIRSWTAIERADVCLIM 266



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+ FN LA   ++IV D PG TRD +  +++       + DT GI   +
Sbjct: 6   VAVVGRPNVGKSTFFNYLAGSRISIVEDTPGVTRDRIYTEIEWRSTKFTLIDTGGIEPYS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+ ++  ++  + +E AD+I+ +
Sbjct: 66  EDIIMQQMKRQAEIAIETADVIVFM 90


>gi|312622952|ref|YP_004024565.1| ribosome-associated GTPase enga [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203419|gb|ADQ46746.1| ribosome-associated GTPase EngA [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 440

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 3/106 (2%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + ++ ++  + EI     K+ I+G  N GKSSL N +  ++  IV+DIPGTTRD +    
Sbjct: 159 VVNYFNKEGINEIEEGTIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTF 218

Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           + EG  + + DTAG+R    I   VE+  + RT   +E +D+ ++L
Sbjct: 219 EFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIIL 264



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  +  AIV D PG TRD +  + +  G    + DT GI   +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPYS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+ K+  ++    ++ +D+I+ +
Sbjct: 65  EDIILKQMRRQAQFAIDMSDVIIFM 89


>gi|73749080|ref|YP_308319.1| GTP-binding protein EngA [Dehalococcoides sp. CBDB1]
 gi|73660796|emb|CAI83403.1| GTP-binding protein EngA [Dehalococcoides sp. CBDB1]
          Length = 442

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G +N GKS+L N    ++ +IV++IPGTTRD +   LD +G  V + DTAGIR  
Sbjct: 182 KLALVGRTNVGKSTLLNTFLGEERSIVSNIPGTTRDAIDTPLDFDGTNVLLIDTAGIRRR 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VEK  + R    ++ AD++LL+
Sbjct: 242 GKVESGVEKYSVLRALKAIDRADVVLLV 269



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 22/171 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           I I+G  N GKS+L N LA K++AI  D+PGTTRD L   +      + + DT G+  + 
Sbjct: 9   IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFATVSWLDRRLIMVDTGGLDPDI 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSD-- 330
           + ++ ++   +  L ++ ADL+LL+ ++            +I        I +  K+D  
Sbjct: 69  ESVIGQQVNIQISLAIKEADLVLLVVDVKDGLITPDYEMADIIRRTGKPVILVANKADNL 128

Query: 331 -LYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            +    TE Y        +IS+F G G+ +L++++   L ++    P + P
Sbjct: 129 KMGQEATEFYSLGFGEPAVISAFHGTGISDLMDRVLEELPDQ----PIATP 175


>gi|209694322|ref|YP_002262250.1| GTP-binding protein EngA [Aliivibrio salmonicida LFI1238]
 gi|238058970|sp|B6EGZ1|DER_ALISL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|208008273|emb|CAQ78418.1| GTP-binding protein [Aliivibrio salmonicida LFI1238]
          Length = 500

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 106/202 (52%), Gaps = 22/202 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ EG    + DTAG+R  
Sbjct: 212 KLAIIGRPNVGKSTLINRILGEERVVVYDMPGTTRDSIYIPMEREGQEYVLIDTAGVRRR 271

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
              ++ VEK  + +T   +E+A+++LL+  I++++ IS   + D   +G   +   +   
Sbjct: 272 GRINETVEKFSVIKTLKAIEDANVVLLV--IDARENIS---DQDLSLLGFALNAGRSL-- 324

Query: 338 EYDHLISSFTGEGL-EELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLE 391
               +I+    +GL  E+  K+KS L  +     F +L F    H   + HL ++V+   
Sbjct: 325 ----VIAVNKWDGLNNEVKEKVKSELDRRLGFVDFARLHFISALHGTGVGHLYESVQEAY 380

Query: 392 MASLNEKDCGLDIIAENLRLAS 413
           +++   K  G  ++   +++A 
Sbjct: 381 VSAT--KRVGTSVLTRVMKMAQ 400



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN + +   A+V D PG TRD       LE     + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRVTRTRDALVADFPGLTRDRKYGRAKLEEQEFILIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   +E AD++L +
Sbjct: 65  EGVETKMAEQSLAAIEEADVVLFM 88


>gi|187924514|ref|YP_001896156.1| GTP-binding protein EngA [Burkholderia phytofirmans PsJN]
 gi|238689579|sp|B2SXS6|DER_BURPP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|187715708|gb|ACD16932.1| small GTP-binding protein [Burkholderia phytofirmans PsJN]
          Length = 445

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 62/101 (61%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + DTAG+
Sbjct: 178 RGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLIDTAGL 237

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R    +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 238 RRRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276



 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADLPGLTRDRHYGEGRAGDRPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE +D+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEESDIVVFI 89


>gi|225374467|ref|ZP_03751688.1| hypothetical protein ROSEINA2194_00082 [Roseburia inulinivorans DSM
           16841]
 gi|225213705|gb|EEG96059.1| hypothetical protein ROSEINA2194_00082 [Roseburia inulinivorans DSM
           16841]
          Length = 449

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSL N LA++D  IV+DI GTTRD +  D+   G      DTAG+R  
Sbjct: 186 KIAIIGKPNVGKSSLINKLAQEDRVIVSDIAGTTRDAIDTDIKYNGKEYVFIDTAGLRRK 245

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + I   +E+  I R    VE AD+ +++
Sbjct: 246 NKIKEEIERYSIIRAVTAVERADVCIIV 273



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  ++    +   + DT GI  ++
Sbjct: 13  VAIVGRPNVGKSTLFNALAGERISIVQDTPGVTRDRIYAEVSWLDHNFTMIDTGGIEPDS 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           +DI+  +  ++  + +  AD+I+ + ++
Sbjct: 73  NDIILSQMREQAEIAIATADVIMFIVDV 100


>gi|239616622|ref|YP_002939944.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1]
 gi|259645881|sp|C5CIV1|DER_KOSOT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|239505453|gb|ACR78940.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1]
          Length = 442

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 4/92 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  K+ I+G  NAGKSSLFN++   D ++VT+IPGTTRD++   ++++G  V   DTAG+
Sbjct: 180 DNLKVAIIGKPNAGKSSLFNSIVGSDRSLVTEIPGTTRDMVDETIEIDGMPVTFIDTAGM 239

Query: 278 RETDDI----VEKEGIKRTFLEVENADLILLL 305
           R    +    VE   + R    +E +D+ +L+
Sbjct: 240 RRKSKVGVKNVEYYSVMRAVDAIERSDICILV 271



 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           ++I+G  N GKS+LFN L     AI+ D PG TRD +   +  +    ++ DT G+ ++ 
Sbjct: 4   VLIVGRPNVGKSTLFNRLVGGRRAIIDDQPGVTRDFVFGRVFWQHKSFEVVDTCGLFDSP 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            DI+E++  + T   +   DL+L +
Sbjct: 64  KDIIEEKMKEVTLALLSEGDLLLFV 88


>gi|296158988|ref|ZP_06841816.1| ribosome-associated GTPase EngA [Burkholderia sp. Ch1-1]
 gi|295890863|gb|EFG70653.1| ribosome-associated GTPase EngA [Burkholderia sp. Ch1-1]
          Length = 445

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 62/101 (61%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + DTAG+
Sbjct: 178 RGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLIDTAGL 237

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R    +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 238 RRRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276



 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 26/158 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKE------INSKKEISFPKNID---FIFIGT 327
           + V K+GI     ++T   VE +D+++ + +         K    + + +    F+ +  
Sbjct: 61  EPVAKDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKVGRPIFLVVNK 120

Query: 328 KSDL-YSTYTEEYDHL-------ISSFTGEGLEELINK 357
              + YST   ++  L       IS+  G+G+ E+IN+
Sbjct: 121 AEGMKYSTVAADFYELGLGDPRAISAAHGDGVTEMINE 158


>gi|260891170|ref|ZP_05902433.1| ribosome-associated GTPase EngA [Leptotrichia hofstadii F0254]
 gi|260859197|gb|EEX73697.1| ribosome-associated GTPase EngA [Leptotrichia hofstadii F0254]
          Length = 441

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG  I ILG  NAGKSSL N L  ++ +IV+DI GTTRD +   L   G    + DTAGI
Sbjct: 174 NGINIAILGRPNAGKSSLVNKLLNEERSIVSDIAGTTRDTIDSSLKYNGETYTLIDTAGI 233

Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305
           R   + DD +E   + R    ++ AD+ +L+
Sbjct: 234 RRKSKVDDDIEYYSVLRAIKAIKRADVCVLM 264



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           + + I+G  N GKS+LFN L    ++IV D PG TRD L  +++  G    + DT G+  
Sbjct: 3   HTVAIVGRPNVGKSTLFNKLVGDRLSIVKDEPGVTRDRLYREMEWSGKEFILVDTGGLEP 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
            T+D +  +  ++  + ++ AD+I+ L
Sbjct: 63  RTEDFMMGKIKQQAQVAIDEADVIIFL 89


>gi|91784203|ref|YP_559409.1| GTP-binding protein EngA [Burkholderia xenovorans LB400]
 gi|123168328|sp|Q13X32|DER_BURXL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|91688157|gb|ABE31357.1| Small GTP-binding protein [Burkholderia xenovorans LB400]
          Length = 445

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 62/101 (61%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + DTAG+
Sbjct: 178 RGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLIDTAGL 237

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R    +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 238 RRRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 26/158 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKE------INSKKEISFPKNID---FIFIGT 327
           + V K+GI     ++T   VE +D+++ + +         K    + + +    F+ +  
Sbjct: 61  EPVAKDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKVGRPIFLVVNK 120

Query: 328 KSDL-YSTYTEEYDHL-------ISSFTGEGLEELINK 357
              + YST   ++  L       IS+  G+G+ E+IN+
Sbjct: 121 AEGMKYSTVAADFYELGLGDPRAISAAHGDGVTEMINE 158


>gi|84624044|ref|YP_451416.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898989|ref|YP_201168.2| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188576711|ref|YP_001913640.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188576902|ref|YP_001913831.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|123752759|sp|Q2P2T5|DER_XANOM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|84367984|dbj|BAE69142.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521163|gb|ACD59108.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521354|gb|ACD59299.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 465

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 93/179 (51%), Gaps = 21/179 (11%)

Query: 147 MEGMSGELSSLYGQ---WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK--- 200
           ++G  GE SSL  +   W+ KL      +   +D ++EE V++  ++   +D++ L    
Sbjct: 90  VDGREGE-SSLDDEILAWLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAH 148

Query: 201 --------NDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
                    ++ + + +   GE++ N     +I  +G  N GKS+L N L  ++  I ++
Sbjct: 149 RQGIDELLEEVGARLPEEGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASE 208

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           +PGTTRD + +DL+ +G   ++ DTAG+R   + ++ VEK    +T   +E   + +L+
Sbjct: 209 VPGTTRDSIAVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIERCQVAVLM 267



 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + ++G  N GKS++FNAL +   A+V D PG TRD
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39


>gi|167569736|ref|ZP_02362610.1| GTP-binding protein EngA [Burkholderia oklahomensis C6786]
          Length = 445

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKRYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|294660274|ref|NP_852940.2| putative GTPase EngA [Mycoplasma gallisepticum str. R(low)]
 gi|298286805|sp|Q7NBV2|DER_MYCGA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|284811930|gb|AAP56508.2| predicted GTPase EngA [Mycoplasma gallisepticum str. R(low)]
 gi|284930404|gb|ADC30343.1| predicted GTPase EngA [Mycoplasma gallisepticum str. R(high)]
          Length = 456

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 27/160 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL N L KK+  +V+DIPGTTRD +         L K+ DTAGIR    I
Sbjct: 180 IIGKPNVGKSSLLNQLLKKERVLVSDIPGTTRDAIDATFSYNKELYKVIDTAGIRRKGKI 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL----KEINSKKEI----SFPKNIDFIFIGTKSDLY 332
              +EK  ++RT   +  + +ILL+     +++ + E+     +  N+  I +  K DL 
Sbjct: 240 ATRIEKFSVQRTQQAISRSKMILLMLDGSVDLSEQDEVIGGLCYEANLPTIIVVNKWDL- 298

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               ++ D  +  F            K  + +KFK LP+S
Sbjct: 299 ---VKKDDKTMELF------------KKQIRSKFKYLPWS 323



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 49/85 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+LFN L K  +AIV D PG TRD +  D++      +I DT G+   
Sbjct: 3   KVAIVGKPNVGKSTLFNRLIKNRIAIVDDTPGITRDRIFGDVEWLTKRFQIIDTGGLTTE 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D+ ++   ++    ++ AD+IL +
Sbjct: 63  SDVFQRAIEQQVQFAIDEADIILFV 87


>gi|121598397|ref|YP_993149.1| GTP-binding protein EngA [Burkholderia mallei SAVP1]
 gi|217421388|ref|ZP_03452892.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 576]
 gi|237812544|ref|YP_002896995.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei MSHR346]
 gi|238563546|ref|ZP_00438709.2| ribosome-associated GTPase EngA [Burkholderia mallei GB8 horse 4]
 gi|242314802|ref|ZP_04813818.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1106b]
 gi|251767656|ref|ZP_02268028.2| ribosome-associated GTPase EngA [Burkholderia mallei PRL-20]
 gi|254197870|ref|ZP_04904292.1| GTP-binding protein EngA [Burkholderia pseudomallei S13]
 gi|254199946|ref|ZP_04906312.1| GTP-binding protein EngA [Burkholderia mallei FMH]
 gi|254206279|ref|ZP_04912631.1| GTP-binding protein EngA [Burkholderia mallei JHU]
 gi|52426961|gb|AAU47554.1| GTPase family protein [Burkholderia mallei ATCC 23344]
 gi|76581515|gb|ABA50990.1| GTPase family protein [Burkholderia pseudomallei 1710b]
 gi|121227207|gb|ABM49725.1| GTPase family protein [Burkholderia mallei SAVP1]
 gi|147749542|gb|EDK56616.1| GTP-binding protein EngA [Burkholderia mallei FMH]
 gi|147753722|gb|EDK60787.1| GTP-binding protein EngA [Burkholderia mallei JHU]
 gi|169654611|gb|EDS87304.1| GTP-binding protein EngA [Burkholderia pseudomallei S13]
 gi|217395130|gb|EEC35148.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 576]
 gi|237503777|gb|ACQ96095.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei MSHR346]
 gi|238520490|gb|EEP83949.1| ribosome-associated GTPase EngA [Burkholderia mallei GB8 horse 4]
 gi|242138041|gb|EES24443.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1106b]
 gi|243062055|gb|EES44241.1| ribosome-associated GTPase EngA [Burkholderia mallei PRL-20]
          Length = 460

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+
Sbjct: 193 RGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKHYTLIDTAGL 252

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R    +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 253 RRRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 291



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 20  IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 75

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 76  EPVAKDGILHEMARQTRQAVEEADVVVFI 104


>gi|312794132|ref|YP_004027055.1| ribosome-associated gtpase enga [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312877879|ref|ZP_07737825.1| ribosome-associated GTPase EngA [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311795342|gb|EFR11725.1| ribosome-associated GTPase EngA [Caldicellulosiruptor lactoaceticus
           6A]
 gi|312181272|gb|ADQ41442.1| ribosome-associated GTPase EngA [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 440

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 3/106 (2%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + ++  +  + EI  +  K+ I+G  N GKSSL N +  ++  IV+DIPGTTRD +    
Sbjct: 159 VVNYFDKEGINEIEESTIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTF 218

Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           + EG  + + DTAG+R    I   VE+  + RT   +E +D+ ++L
Sbjct: 219 EFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIIL 264



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  +  AIV D PG TRD +  + +  G    + DT GI   +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPYS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+ K+  ++    ++ +D+I+ +
Sbjct: 65  EDIILKQMRRQAQFAIDMSDVIIFM 89


>gi|312134636|ref|YP_004001974.1| ribosome-associated gtpase enga [Caldicellulosiruptor owensensis
           OL]
 gi|311774687|gb|ADQ04174.1| ribosome-associated GTPase EngA [Caldicellulosiruptor owensensis
           OL]
          Length = 440

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 3/106 (2%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + +++    + EI  +  K+ I+G  N GKSSL N +  ++  IV+DIPGTTRD +    
Sbjct: 159 VVNYLDNVGINEIEESTIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTF 218

Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           + EG  + + DTAG+R    I   VE+  + RT   +E +D+ ++L
Sbjct: 219 EFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIIL 264



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  +  AIV D PG TRD +  + +  G    + DT GI   +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPYS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+ K+  ++    V+ +D+I+ +
Sbjct: 65  EDIILKQMRRQAQFAVDMSDVIIFI 89


>gi|167562554|ref|ZP_02355470.1| GTP-binding protein EngA [Burkholderia oklahomensis EO147]
          Length = 445

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKRYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 13/91 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID--LDLEGYLVKISDTAGIRE 279
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  + +  YLV   DT G   
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGVRPYLV--VDTGGF-- 60

Query: 280 TDDIVEKEGI-----KRTFLEVENADLILLL 305
             + V K+GI     ++T   VE AD+++ +
Sbjct: 61  --EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|207743439|ref|YP_002259831.1| gtp-binding protein enga (partial sequence c terminus) [Ralstonia
           solanacearum IPO1609]
 gi|206594836|emb|CAQ61763.1| putative gtp-binding protein enga (partial sequence c terminus)
           [Ralstonia solanacearum IPO1609]
          Length = 363

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 64/101 (63%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + DTAG+
Sbjct: 95  HGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGL 154

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R+   +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 155 RKRGKVFEAIEKFSVVKTLQSIADANVVVLL--LDAQQDIS 193


>gi|329897033|ref|ZP_08271805.1| GTP-binding protein EngA [gamma proteobacterium IMCC3088]
 gi|328921473|gb|EGG28859.1| GTP-binding protein EngA [gamma proteobacterium IMCC3088]
          Length = 463

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 57/91 (62%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G K+ I+G  N GKS+L N +  ++  +V D PGTTRD + ID + EG    + DTAG+
Sbjct: 174 HGIKVAIVGRPNVGKSTLVNRMLGEERVVVYDHPGTTRDSVYIDFEREGEQYTLIDTAGV 233

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R   ++   VEK  I +T   +++++++LLL
Sbjct: 234 RRRKNVKESVEKFSIVKTLKAIDDSNVVLLL 264



 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D  G TRD    +  +      + DT GI   +
Sbjct: 5   IALMGRPNVGKSTLFNQLTRSRDALVADFSGLTRDRKYGEGKVGERPYVVIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++    +++    + AD++LL+
Sbjct: 65  NGIDLPMAQQSMAAADEADIVLLI 88


>gi|320335804|ref|YP_004172515.1| GTP-binding protein engA [Deinococcus maricopensis DSM 21211]
 gi|319757093|gb|ADV68850.1| GTP-binding protein engA [Deinococcus maricopensis DSM 21211]
          Length = 441

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL NA+   +  IV+D+PGTTRD + ++ D  G    + DTAGIR+ 
Sbjct: 174 RISLIGRPNVGKSSLLNAITGSERVIVSDVPGTTRDSVDVEWDYAGQRFVLVDTAGIRKR 233

Query: 281 DDI-VEKEGIKRTFLEVENADLILLL 305
            D  +E+  + R+   +  +D+ILL+
Sbjct: 234 PDTSIEEYAMMRSEAAITRSDVILLV 259



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  N GKSSLFN L  +  A+V D PG TRD     +  + + + + DT G+  
Sbjct: 2   HKVAIVGRPNVGKSSLFNRLVGRREAVVADFPGVTRDAKEGVMLYQNHRIVLIDTGGLWS 61

Query: 280 TDDIVE 285
            D+  E
Sbjct: 62  GDEWEE 67


>gi|289670462|ref|ZP_06491537.1| GTP-binding protein EngA [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 465

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 84/162 (51%), Gaps = 17/162 (10%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209
           W+ KL      +   +D ++EE V++  ++   +D++ L             ++ + + +
Sbjct: 106 WLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLEEVGARLPE 165

Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              GE++ N     +I  +G  N GKS+L N L  ++  I +++PGTTRD + +DL+ +G
Sbjct: 166 EGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDG 225

Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
              ++ DTAG+R   + ++ VEK    +T   +E   + +L+
Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267



 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + ++G  N GKS++FNAL +   A+V D PG TRD
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39


>gi|16330798|ref|NP_441526.1| GTP-binding protein EngA [Synechocystis sp. PCC 6803]
 gi|8928101|sp|P74120|DER_SYNY3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|1653291|dbj|BAA18206.1| slr1974 [Synechocystis sp. PCC 6803]
          Length = 452

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSL NAL  +  AIV+ I GTTRD + + ++  G   ++ DTAGIR  
Sbjct: 178 KVAIVGRPNVGKSSLLNALTGEQRAIVSPISGTTRDAIDMVVERNGQKYRLIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEI 308
            ++    E  GI R F  +  AD++L + ++
Sbjct: 238 KNVDYGAEFFGINRAFKAIRRADVVLFVLDV 268



 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 29/61 (47%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N LA    AIV D PG TRD             ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTFVNRLAGNQQAIVHDQPGITRDRTYRPAFWRDRDFQVVDTGGLVFND 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|17545938|ref|NP_519340.1| GTP-binding protein EngA [Ralstonia solanacearum GMI1000]
 gi|26006721|sp|Q8Y026|DER_RALSO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|17428233|emb|CAD14921.1| putative gtp-binding protein [Ralstonia solanacearum GMI1000]
          Length = 447

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 64/101 (63%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + DTAG+
Sbjct: 179 HGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGL 238

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R+   +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RKRGKVFEAIEKFSVVKTLQSIADANVVVLL--LDAQQDIS 277



 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 28/159 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILL------------------LKEINSKKEISFPK 318
           + V KEGI     K+T   V  AD+++                   L++   +  ++  K
Sbjct: 61  EPVAKEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNK 120

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
                +    +D Y     +    ISS  G+G+ EL+++
Sbjct: 121 AEGMKYTAVATDFYELGLGD-PRAISSAHGDGVRELVDE 158


>gi|83747951|ref|ZP_00944982.1| GTP-binding protein [Ralstonia solanacearum UW551]
 gi|207723168|ref|YP_002253567.1| gtp-binding protein [Ralstonia solanacearum MolK2]
 gi|83725369|gb|EAP72516.1| GTP-binding protein [Ralstonia solanacearum UW551]
 gi|206588362|emb|CAQ35325.1| gtp-binding protein [Ralstonia solanacearum MolK2]
          Length = 447

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 64/101 (63%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + DTAG+
Sbjct: 179 HGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGL 238

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R+   +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RKRGKVFEAIEKFSVVKTLQSIADANVVVLL--LDAQQDIS 277



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V KEGI     K+T   V  AD+++ +
Sbjct: 61  EPVAKEGIVAEMAKQTRQAVVEADVVIFI 89


>gi|299067270|emb|CBJ38467.1| GTPase involved in ribosome synthesis and maintenance [Ralstonia
           solanacearum CMR15]
          Length = 447

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 64/101 (63%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + DTAG+
Sbjct: 179 HGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGL 238

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R+   +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RKRGKVFEAIEKFSVVKTLQSIADANVVVLL--LDAQQDIS 277



 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 28/159 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFIAIDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILL------------------LKEINSKKEISFPK 318
           + V KEGI     K+T   V  AD+++                   L++   +  ++  K
Sbjct: 61  EPVAKEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNK 120

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
                +    +D Y     +    ISS  G+G+ EL+++
Sbjct: 121 AEGMKYTAVATDFYELGLGD-PRAISSAHGDGVRELVDE 158


>gi|226320990|ref|ZP_03796535.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 29805]
 gi|226233591|gb|EEH32327.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 29805]
          Length = 433

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 7/110 (6%)

Query: 207 ISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           +  GK+G  I +G   K+ I+G  N+GKS+L N L+  ++AIV+D PGTTRD +      
Sbjct: 161 VEVGKVG--IESGADIKVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTR 218

Query: 265 EGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            G + ++ DTAGIR     ++IVE   + R    ++  D++ LL ++  K
Sbjct: 219 NGKVFEVVDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEK 268



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D + K  +++    +E  DLILL+ +IN
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDIN 94


>gi|167587055|ref|ZP_02379443.1| GTP-binding protein EngA [Burkholderia ubonensis Bu]
          Length = 445

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GTKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSIADANVVILL--LDARQDIS 276



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|300312253|ref|YP_003776345.1| GTP-binding protein [Herbaspirillum seropedicae SmR1]
 gi|300075038|gb|ADJ64437.1| GTP-binding protein [Herbaspirillum seropedicae SmR1]
          Length = 447

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G KI I+G  N GKS+L N L  ++  I  D+PGTTRD + I  + EG    + DTAGI
Sbjct: 179 RGTKIAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDSIEIPFEREGRHYTLIDTAGI 238

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R    +   +EK  + +T   + +A+++LLL  ++++++IS
Sbjct: 239 RRRGKVFEAIEKFSVVKTLKSISDANVVLLL--LDAQQDIS 277



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     K+T   V  AD+++ +
Sbjct: 61  EPVAKDGIMYEMAKQTKQAVVEADVVVFI 89


>gi|134277744|ref|ZP_01764459.1| GTP-binding protein EngA [Burkholderia pseudomallei 305]
 gi|226197301|ref|ZP_03792878.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei Pakistan
           9]
 gi|134251394|gb|EBA51473.1| GTP-binding protein EngA [Burkholderia pseudomallei 305]
 gi|225930680|gb|EEH26690.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei Pakistan
           9]
          Length = 433

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 167 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKHYTLIDTAGLR 226

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 227 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 264



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI- 289
           GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     + V K+GI 
Sbjct: 2   GKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF----EPVAKDGIL 57

Query: 290 ----KRTFLEVENADLILLL 305
               ++T   VE AD+++ +
Sbjct: 58  HEMARQTRQAVEEADVVVFI 77


>gi|83652896|gb|ABC36959.1| GTPase family protein [Burkholderia thailandensis E264]
          Length = 460

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+
Sbjct: 193 RGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKQYTLIDTAGL 252

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R    +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 253 RRRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 291



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 20  IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 75

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 76  EPVAKDGILHEMARQTRQAVEEADVVVFI 104


>gi|53719151|ref|YP_108137.1| GTP-binding protein EngA [Burkholderia pseudomallei K96243]
 gi|124383522|ref|YP_001026075.1| GTP-binding protein EngA [Burkholderia mallei NCTC 10229]
 gi|126439512|ref|YP_001059220.1| GTP-binding protein EngA [Burkholderia pseudomallei 668]
 gi|126449445|ref|YP_001080656.1| GTP-binding protein EngA [Burkholderia mallei NCTC 10247]
 gi|126454834|ref|YP_001066487.1| GTP-binding protein EngA [Burkholderia pseudomallei 1106a]
 gi|161579520|ref|YP_103001.2| GTP-binding protein EngA [Burkholderia mallei ATCC 23344]
 gi|162210023|ref|YP_333745.2| GTP-binding protein EngA [Burkholderia pseudomallei 1710b]
 gi|167719273|ref|ZP_02402509.1| GTP-binding protein EngA [Burkholderia pseudomallei DM98]
 gi|167738270|ref|ZP_02411044.1| GTP-binding protein EngA [Burkholderia pseudomallei 14]
 gi|167815459|ref|ZP_02447139.1| GTP-binding protein EngA [Burkholderia pseudomallei 91]
 gi|167823871|ref|ZP_02455342.1| GTP-binding protein EngA [Burkholderia pseudomallei 9]
 gi|167845410|ref|ZP_02470918.1| GTP-binding protein EngA [Burkholderia pseudomallei B7210]
 gi|167902402|ref|ZP_02489607.1| GTP-binding protein EngA [Burkholderia pseudomallei NCTC 13177]
 gi|167910644|ref|ZP_02497735.1| GTP-binding protein EngA [Burkholderia pseudomallei 112]
 gi|167918673|ref|ZP_02505764.1| GTP-binding protein EngA [Burkholderia pseudomallei BCC215]
 gi|254177966|ref|ZP_04884621.1| GTPase family protein [Burkholderia mallei ATCC 10399]
 gi|254189054|ref|ZP_04895565.1| GTP-binding protein EngA [Burkholderia pseudomallei Pasteur 52237]
 gi|254259698|ref|ZP_04950752.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1710a]
 gi|254297432|ref|ZP_04964885.1| GTP-binding protein EngA [Burkholderia pseudomallei 406e]
 gi|254358306|ref|ZP_04974579.1| GTP-binding protein EngA [Burkholderia mallei 2002721280]
 gi|81824774|sp|Q63US9|DER_BURPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166224313|sp|A3MK70|DER_BURM7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166224314|sp|A2S2A6|DER_BURM9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166224315|sp|A3NVW6|DER_BURP0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166224316|sp|A3NA49|DER_BURP6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|52209565|emb|CAH35518.1| putative GTPase [Burkholderia pseudomallei K96243]
 gi|124291542|gb|ABN00811.1| ribosome-associated GTPase EngA [Burkholderia mallei NCTC 10229]
 gi|126219005|gb|ABN82511.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 668]
 gi|126228476|gb|ABN92016.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1106a]
 gi|126242315|gb|ABO05408.1| ribosome-associated GTPase EngA [Burkholderia mallei NCTC 10247]
 gi|148027433|gb|EDK85454.1| GTP-binding protein EngA [Burkholderia mallei 2002721280]
 gi|157808014|gb|EDO85184.1| GTP-binding protein EngA [Burkholderia pseudomallei 406e]
 gi|157936733|gb|EDO92403.1| GTP-binding protein EngA [Burkholderia pseudomallei Pasteur 52237]
 gi|160699005|gb|EDP88975.1| GTPase family protein [Burkholderia mallei ATCC 10399]
 gi|254218387|gb|EET07771.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1710a]
          Length = 445

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKHYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|300704410|ref|YP_003746013.1| GTPase [Ralstonia solanacearum CFBP2957]
 gi|299072074|emb|CBJ43406.1| GTPase involved in ribosome synthesis and maintenance [Ralstonia
           solanacearum CFBP2957]
          Length = 447

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 64/101 (63%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + DTAG+
Sbjct: 179 HGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGL 238

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R+   +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RKRGKVFEAIEKFSVVKTLQSIADANVVVLL--LDAQQDIS 277



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V KEGI     K+T   V  AD+++ +
Sbjct: 61  EPVAKEGIVAEMAKQTRQAVVEADVVIFI 89


>gi|254179556|ref|ZP_04886155.1| GTP-binding protein EngA [Burkholderia pseudomallei 1655]
 gi|184210096|gb|EDU07139.1| GTP-binding protein EngA [Burkholderia pseudomallei 1655]
          Length = 445

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKHYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|223937585|ref|ZP_03629488.1| small GTP-binding protein [bacterium Ellin514]
 gi|223893748|gb|EEF60206.1| small GTP-binding protein [bacterium Ellin514]
          Length = 519

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 7/104 (6%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           +GK    ++   K+ I+G  N GKSS+ NAL + +  IV+ IPGTTRD + +  ++E   
Sbjct: 190 EGKTKSELKGPLKLAIVGRPNVGKSSIINALTQSERVIVSPIPGTTRDAVDVPFEVEADG 249

Query: 269 VKIS----DTAGIRET---DDIVEKEGIKRTFLEVENADLILLL 305
           ++ S    DTAG+R++   DD VE   +KRT   +  AD+ +L+
Sbjct: 250 IRQSYLLIDTAGLRKSRRVDDSVEFYSVKRTEDSIARADICVLV 293



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 5/93 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           I I+G  N GKS+LFN +A + +AIV D+PG TRD ++ +++  G+   + DT GI    
Sbjct: 5   IAIVGRPNVGKSALFNRIAGRRIAIVHDMPGVTRDRVSAEVEWGGHAFTLVDTGGIGLLR 64

Query: 278 RE-TDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           RE   D++ K  +++  L +E A +I+L   + 
Sbjct: 65  REKAADVITKAALEQVDLAIEAAHVIILAANVQ 97


>gi|167893952|ref|ZP_02481354.1| GTP-binding protein EngA [Burkholderia pseudomallei 7894]
          Length = 454

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 167 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKHYTLIDTAGLR 226

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 227 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 264



 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI- 289
           GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     + V K+GI 
Sbjct: 2   GKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF----EPVAKDGIL 57

Query: 290 ----KRTFLEVENADLILLL 305
               ++T   VE AD+++ +
Sbjct: 58  HEMARQTRQAVEEADVVVFI 77


>gi|223888990|ref|ZP_03623581.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 64b]
 gi|223885806|gb|EEF56905.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 64b]
          Length = 433

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N+GKS+L N L+  ++AIV+D PGTTRD +       G + ++ DTAGIR  
Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRR 234

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
              ++IVE   + R    ++  D++ LL ++  K
Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEK 268



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESAYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D + K  +++    +E  DLILL+ +IN
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDIN 94


>gi|224533510|ref|ZP_03674099.1| ribosome-associated GTPase EngA [Borrelia burgdorferi CA-11.2a]
 gi|224513183|gb|EEF83545.1| ribosome-associated GTPase EngA [Borrelia burgdorferi CA-11.2a]
          Length = 433

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N+GKS+L N L+  ++AIV+D PGTTRD +       G + ++ DTAGIR  
Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRR 234

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
              ++IVE   + R    ++  D++ LL ++  K
Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEK 268



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D + K  +++    +E  DLILL+ +IN
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDIN 94


>gi|216264686|ref|ZP_03436678.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 156a]
 gi|215981159|gb|EEC21966.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 156a]
          Length = 433

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N+GKS+L N L+  ++AIV+D PGTTRD +       G + ++ DTAGIR  
Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRR 234

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
              ++IVE   + R    ++  D++ LL ++  K
Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEK 268



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D + K  +++    +E  DLILL+ +IN
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDIN 94


>gi|312148299|gb|ADQ30958.1| ribosome-associated GTPase EngA [Borrelia burgdorferi JD1]
          Length = 433

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N+GKS+L N L+  ++AIV+D PGTTRD +       G + ++ DTAGIR  
Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRR 234

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
              ++IVE   + R    ++  D++ LL ++  K
Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEK 268



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDIKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D + K  +++    +E  DLILL+ +IN
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDIN 94


>gi|15594853|ref|NP_212642.1| GTP-binding protein EngA [Borrelia burgdorferi B31]
 gi|218249913|ref|YP_002375018.1| ribosome-associated GTPase EngA [Borrelia burgdorferi ZS7]
 gi|221218131|ref|ZP_03589597.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 72a]
 gi|224532891|ref|ZP_03673503.1| ribosome-associated GTPase EngA [Borrelia burgdorferi WI91-23]
 gi|225548736|ref|ZP_03769783.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 94a]
 gi|225549607|ref|ZP_03770573.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 118a]
 gi|226321818|ref|ZP_03797344.1| ribosome-associated GTPase EngA [Borrelia burgdorferi Bol26]
 gi|8134424|sp|O51461|DER_BORBU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|2688422|gb|AAC66872.1| GTP-binding protein [Borrelia burgdorferi B31]
 gi|218165101|gb|ACK75162.1| ribosome-associated GTPase EngA [Borrelia burgdorferi ZS7]
 gi|221192079|gb|EEE18300.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 72a]
 gi|224512167|gb|EEF82556.1| ribosome-associated GTPase EngA [Borrelia burgdorferi WI91-23]
 gi|225369884|gb|EEG99331.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 118a]
 gi|225370766|gb|EEH00202.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 94a]
 gi|226233007|gb|EEH31760.1| ribosome-associated GTPase EngA [Borrelia burgdorferi Bol26]
          Length = 433

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N+GKS+L N L+  ++AIV+D PGTTRD +       G + ++ DTAGIR  
Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRR 234

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
              ++IVE   + R    ++  D++ LL ++  K
Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEK 268



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D + K  +++    +E  DLILL+ +IN
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDIN 94


>gi|161723167|ref|YP_442759.2| GTP-binding protein EngA [Burkholderia thailandensis E264]
 gi|167581710|ref|ZP_02374584.1| GTP-binding protein EngA [Burkholderia thailandensis TXDOH]
 gi|167619826|ref|ZP_02388457.1| GTP-binding protein EngA [Burkholderia thailandensis Bt4]
 gi|257138969|ref|ZP_05587231.1| GTP-binding protein EngA [Burkholderia thailandensis E264]
          Length = 445

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKQYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|167836401|ref|ZP_02463284.1| GTP-binding protein EngA [Burkholderia thailandensis MSMB43]
          Length = 445

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GTKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKQYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|289433056|ref|YP_003462929.1| ribosome-associated GTPase EngA [Dehalococcoides sp. GT]
 gi|288946776|gb|ADC74473.1| ribosome-associated GTPase EngA [Dehalococcoides sp. GT]
          Length = 442

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G +N GKS+L N    ++ ++V++IPGTTRD +   LD +G  V + DTAGIR  
Sbjct: 182 KLALVGRTNVGKSTLLNTFLGEERSVVSNIPGTTRDAIDTPLDFDGTNVLLIDTAGIRRR 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VEK  + R    ++ AD++LL+
Sbjct: 242 GKVESGVEKYSVLRALKAIDRADVVLLV 269



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 22/171 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           I I+G  N GKS+L N LA K++AI  D+PGTTRD L   +      + + DT G+  + 
Sbjct: 9   IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFATVSWLDRRLIMVDTGGLDPDI 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSD-- 330
           + ++ ++   +  L ++ ADL+LL+ ++            +I        I +  K+D  
Sbjct: 69  ESVIGQQVNIQISLAIKEADLVLLVVDVKDGLITPDYEMADIIRRTGKPVILVANKADNL 128

Query: 331 -LYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            +    TE Y        +IS+F G G+ +L++++   L ++    P + P
Sbjct: 129 KMGQEATEFYSLGFGEPAVISAFHGTGISDLMDRVLEELPDQ----PIATP 175


>gi|238027075|ref|YP_002911306.1| GTP-binding protein EngA [Burkholderia glumae BGR1]
 gi|237876269|gb|ACR28602.1| GTPase family protein [Burkholderia glumae BGR1]
          Length = 448

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GVKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGARPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|291288774|ref|YP_003505590.1| ribosome-associated GTPase EngA [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885934|gb|ADD69634.1| ribosome-associated GTPase EngA [Denitrovibrio acetiphilus DSM
           12809]
          Length = 450

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 17/156 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN LA K +AIV D+PG TRD +    + EG   +I DTAG   
Sbjct: 2   FTVGIIGRPNVGKSTLFNRLAGKRLAIVDDMPGVTRDRIEFTTEWEGEKFRIVDTAGFDL 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFP----KNIDFIFIGTKSD- 330
            +++V+KE  ++ +  ++ AD  +L+ +    ++   EI       KN  F  +  K D 
Sbjct: 62  KEELVKKEMQQQFYSALDEADYFILMADGTEGVHPLDEIVIDLLRHKNKPFQLVVNKVDS 121

Query: 331 ------LYSTYTEEYDHL--ISSFTGEGLEELINKI 358
                 +Y  Y    +H+  IS+  G  ++ L+++I
Sbjct: 122 DSKEDFIYDFYRMGVEHIIAISASHGRNVDMLLDEI 157



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KIV+ G  N GKSS+ N    ++  IVT IPGTTRD +    +L+G    + DTAGIR+ 
Sbjct: 176 KIVVTGRPNVGKSSMINKWLGEERLIVTPIPGTTRDAVDTFFELDGDKYVLIDTAGIRKK 235

Query: 281 ----DDIVEKEGIKRTFLEVENADLILLL 305
                D +EK G  R    VE AD+ + L
Sbjct: 236 KSMFKDKIEKYGYYRWKDAVERADISVCL 264


>gi|330817163|ref|YP_004360868.1| GTPase family protein [Burkholderia gladioli BSR3]
 gi|327369556|gb|AEA60912.1| GTPase family protein [Burkholderia gladioli BSR3]
          Length = 448

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GVKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAGLR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRAGARPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   VE AD+++ +
Sbjct: 61  EPVAKDGILHEMARQTRQAVEEADVVVFI 89


>gi|311105363|ref|YP_003978216.1| GTP-binding protein EngA [Achromobacter xylosoxidans A8]
 gi|310760052|gb|ADP15501.1| GTP-binding protein EngA [Achromobacter xylosoxidans A8]
          Length = 450

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N L  ++  I  D+PGTTRD + ID + +G    + DTAG+R+ 
Sbjct: 186 KLAIVGRPNVGKSTLINTLMGEERVIAFDMPGTTRDAIEIDFERDGRRYTLIDTAGLRKR 245

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E ++++LL+  ++++ EIS
Sbjct: 246 GKVFEAVEKFSVIKTLQAIEASNVVLLM--LDAQTEIS 281



 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D  G TRD    +  +      + DT G     
Sbjct: 7   VALVGRPNVGKSTLFNRLTRSRAALVADYSGLTRDRHYGEGRVGEIPFIVIDTGGF---- 62

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   +  AD+++ L
Sbjct: 63  EPVAKDGILLEMARQTRQAIAEADVVVFL 91


>gi|260598897|ref|YP_003211468.1| GTP-binding protein Der [Cronobacter turicensis z3032]
 gi|260218074|emb|CBA32819.1| GTP-binding protein engA [Cronobacter turicensis z3032]
          Length = 492

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 64/98 (65%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 206 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREFVLIDTAGVRKR 265

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D+VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 266 GKITDVVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 301



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGAE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L +
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFM 88


>gi|302339695|ref|YP_003804901.1| ribosome-associated GTPase EngA [Spirochaeta smaragdinae DSM 11293]
 gi|301636880|gb|ADK82307.1| ribosome-associated GTPase EngA [Spirochaeta smaragdinae DSM 11293]
          Length = 453

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  N GKS+L N L  +DV+IV+D+PGTTRDV+       G    I DTAGIR  
Sbjct: 194 RLALLGKPNTGKSTLANRLIGRDVSIVSDLPGTTRDVVESSFSYRGMNCTILDTAGIRRK 253

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    +E A ++LL+
Sbjct: 254 KKVGENIEYYSVNRALSAIEEAHVVLLM 281



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 52/88 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +K  AI    PG TRD +  +  L+ Y + I DT G +   
Sbjct: 18  IAVVGRPNVGKSTLFNRLVRKRRAITDPTPGVTRDSIEHEWILDPYALTIVDTGGFKVEG 77

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
           D ++++  +++   ++ ADLILLL ++ 
Sbjct: 78  DSLDEQVKEKSVSYLKRADLILLLMDVT 105


>gi|152978550|ref|YP_001344179.1| GTP-binding protein EngA [Actinobacillus succinogenes 130Z]
 gi|150840273|gb|ABR74244.1| small GTP-binding protein [Actinobacillus succinogenes 130Z]
          Length = 503

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 22/146 (15%)

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E   DFS+E D        +L++ L  +N    H          RN  KI I+G  N GK
Sbjct: 185 EQGFDFSDENDT------ALLDEALEEENTKPDH----------RN-IKIAIVGRPNVGK 227

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289
           S+L N +  +D  +V D+PGTTRD + I ++ +G    I DTAG+R+   +   VEK  +
Sbjct: 228 STLTNRILGEDRVVVYDLPGTTRDSIYIPMERDGQHYTIIDTAGVRKRGKVHLAVEKFSV 287

Query: 290 KRTFLEVENADLILLLKEINSKKEIS 315
            +T   +++A+++LL   I++++ IS
Sbjct: 288 IKTLQAIQDANVVLLT--IDAREGIS 311



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 24/168 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANISGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF------------IFIGTKS 329
           + VE++  +++ L +E AD++L L  ++++  ++ P +I              I +  K+
Sbjct: 66  EGVEEKMAEQSLLAIEEADVVLFL--VDARAGLT-PADIGIANYLRQRQSKTTIVVANKT 122

Query: 330 DL--YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368
           D     ++  E+  L       I++  G G+ +L+  + + L+ K KK
Sbjct: 123 DGIDADSHCAEFYQLGLGEITQIAAAQGRGVAQLMEAVLAPLAEKIKK 170


>gi|317403342|gb|EFV83855.1| GTP-binding protein engA [Achromobacter xylosoxidans C54]
          Length = 451

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N L  ++  I  D+PGTTRD + ID + +G    + DTAG+R+ 
Sbjct: 187 KLAIVGRPNVGKSTLINTLMGEERVIAFDMPGTTRDAIEIDFERDGRRYTLIDTAGLRKR 246

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E ++++LL+  ++++ EIS
Sbjct: 247 GKVFEAVEKFSVIKTLQAIEASNVVLLM--LDAQTEIS 282



 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D  G TRD    +  +      + DT G     
Sbjct: 7   VALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYGEGRVGEIPFIVIDTGGF---- 62

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   +  AD+++ L
Sbjct: 63  EPVAKDGILLEMARQTRQAIAEADVVVFL 91


>gi|240146998|ref|ZP_04745599.1| ribosome-associated GTPase EngA [Roseburia intestinalis L1-82]
 gi|257200843|gb|EEU99127.1| ribosome-associated GTPase EngA [Roseburia intestinalis L1-82]
 gi|291535193|emb|CBL08305.1| ribosome-associated GTPase EngA [Roseburia intestinalis M50/1]
 gi|291539724|emb|CBL12835.1| ribosome-associated GTPase EngA [Roseburia intestinalis XB6B4]
          Length = 441

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSL N LA++D  IV+DI GTTRD +  D+   G      DTAG+R  
Sbjct: 179 KVAIIGKPNVGKSSLINKLAQEDRVIVSDIAGTTRDAIDTDIRYNGKEYVFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + I   +E+  I R    VE AD+ +++
Sbjct: 239 NKIKEEIERYSIIRAVTAVERADVCIIV 266



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  D+    Y   + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGERISIVKDTPGVTRDRIYADVTWLDYHFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
            DI+  +  ++  + +  AD+I+ L ++  
Sbjct: 66  KDIILSQMREQAEIAIATADVIIFLTDVRQ 95


>gi|300691802|ref|YP_003752797.1| GTPase involved in ribosome synthesis and maintenance [Ralstonia
           solanacearum PSI07]
 gi|299078862|emb|CBJ51523.1| GTPase involved in ribosome synthesis and maintenance [Ralstonia
           solanacearum PSI07]
          Length = 447

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 63/100 (63%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 180 GTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGLR 239

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +   +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 240 KRGKVFEAIEKFSVVKTLQSIADANVVVLL--LDAQQDIS 277



 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V DIPG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADIPGLTRDRHYGEGRVGERPFIAIDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V KEGI     K+T   V  AD+++ +
Sbjct: 61  EPVAKEGIVAEMAKQTRQAVVEADVVIFI 89


>gi|195941645|ref|ZP_03087027.1| GTP-binding protein EngA [Borrelia burgdorferi 80a]
 gi|312149483|gb|ADQ29554.1| ribosome-associated GTPase EngA [Borrelia burgdorferi N40]
          Length = 433

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N+GKS+L N L+  ++AIV+D PGTTRD +       G + ++ DTAGIR  
Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFARNGKVFEVVDTAGIRRR 234

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
              ++IVE   + R    ++  D++ LL ++  K
Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEK 268



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D + K  +++    +E  DLILL+ +IN
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDIN 94


>gi|156932946|ref|YP_001436862.1| GTP-binding protein EngA [Cronobacter sakazakii ATCC BAA-894]
 gi|166198713|sp|A7MGU7|DER_ENTS8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|156531200|gb|ABU76026.1| hypothetical protein ESA_00749 [Cronobacter sakazakii ATCC BAA-894]
          Length = 492

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 64/98 (65%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 206 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREFVLIDTAGVRKR 265

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D+VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 266 GKITDVVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 301



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L +
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFM 88


>gi|254228662|ref|ZP_04922086.1| GTP-binding protein EngA [Vibrio sp. Ex25]
 gi|262395114|ref|YP_003286968.1| GTP-binding protein EngA [Vibrio sp. Ex25]
 gi|151938841|gb|EDN57675.1| GTP-binding protein EngA [Vibrio sp. Ex25]
 gi|262338708|gb|ACY52503.1| GTP-binding protein EngA [Vibrio sp. Ex25]
          Length = 498

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 37/223 (16%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED+  F  +E L +      D +   ++ +   +     K+ I+G  N GKS+L N +
Sbjct: 176 EIEDLTGFEDEEPLVE------DYTEEDAEAEFKRLQEQPIKLAIIGRPNVGKSTLTNRI 229

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEV 296
             ++  +V D+PGTTRD + I ++ +G    + DTAG+R     ++ VEK  + +T   V
Sbjct: 230 LGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRINETVEKFSVVKTLKAV 289

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFI-------GTKSDLYSTYTEEYD- 340
           E+A+++LL+  I++++ IS        F  N     +       G  SD+  +  +E D 
Sbjct: 290 EDANVVLLV--IDARENISDQDLSLLGFALNAGRSIVIAVNKWDGLDSDVKESVKKELDR 347

Query: 341 ----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                     H IS+  G G+  L   I+   ++   ++  S+
Sbjct: 348 RLGFVDFARIHFISALHGTGVGHLFESIQEAYNSATTRVGTSV 390



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       L E +   + DT GI  T
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           ++ VE +  +++   ++ AD++L L
Sbjct: 65  EEGVETKMAEQSLAAIDEADVVLFL 89


>gi|146295934|ref|YP_001179705.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|166224318|sp|A4XHX9|DER_CALS8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145409510|gb|ABP66514.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 440

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 3/106 (2%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + S+  +  + EI  +  K+ I+G  N GKSSL N +  ++  IV+DIPGTTRD +   +
Sbjct: 160 VVSYFDKVGINEIEEDSIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSYV 219

Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           + EG  + + DTAG+R    I   +E+  + RT   +E +D+ ++L
Sbjct: 220 EFEGIPLTLIDTAGLRRKSKIYDNIERYSMLRTISAIERSDICVIL 265



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  +  AIV D PG TRD +  + +  G    + DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIVGETEWRGITFNVIDTGGIEPYS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+ K+  ++    ++ +D+I+ +
Sbjct: 66  EDIILKQMRRQAQFAIDMSDVIIFM 90


>gi|167630055|ref|YP_001680554.1| GTP-binding protein [Heliobacterium modesticaldum Ice1]
 gi|238687893|sp|B0TFW3|DER_HELMI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|167592795|gb|ABZ84543.1| GTP-binding protein [Heliobacterium modesticaldum Ice1]
          Length = 442

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL NA+  ++  IV+DIPGTTRD +    D +G    + DTAG+R  
Sbjct: 179 KIAVIGRPNVGKSSLVNAILGQERVIVSDIPGTTRDAIDTAFDRDGKRYILIDTAGMRRK 238

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305
              ++ VE+  + R+   ++ +D++L++
Sbjct: 239 GRIEEAVERYSVMRSLRAIDRSDVVLMV 266



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L    VAIV D PG TRD L  D +       + DT G+    
Sbjct: 6   VAIVGRPNVGKSTLFNRLTGGRVAIVEDQPGVTRDRLYRDANWLDREFTVVDTGGL---- 61

Query: 282 DIVEKEGI------KRTFLEVENADLILLL 305
           D  ++E        K+    +E AD+IL L
Sbjct: 62  DFGDRENPFSAIIHKQAEAAMEEADVILFL 91


>gi|15601970|ref|NP_245042.1| GTP-binding protein EngA [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431507|sp|P57812|DER_PASMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|12720316|gb|AAK02189.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 510

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 223 KIAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMERDGQHYTIIDTAGVRKR 282

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 283 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDAREGVSDQDLSL---LGFILNAGRSLVIVV 339

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + I+   +   +K+ 
Sbjct: 340 NKWDGLNQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIQEAYACATQKMT 399

Query: 371 FSI 373
            S+
Sbjct: 400 TSM 402



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIEEADVVLFL 89


>gi|160892719|ref|ZP_02073509.1| hypothetical protein CLOL250_00249 [Clostridium sp. L2-50]
 gi|156865760|gb|EDO59191.1| hypothetical protein CLOL250_00249 [Clostridium sp. L2-50]
          Length = 440

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+    Y   I DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVSWLDYNFTIIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           D+I+ K   ++  + +E AD+I+ + ++
Sbjct: 66  DNIILKSMREQAEIAIETADVIIFMTDV 93



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 3/108 (2%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           +++ SH  +    E   +  +I I+G  N GKSS+ N L  ++  IV+DI GTTRD +  
Sbjct: 159 DEVVSHFDEDSKNEEEDDRPRIAIIGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAIDT 218

Query: 261 DLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           ++   G      DTAG+R    I   +E+  I RT   VE  ++ +L+
Sbjct: 219 EIVRNGTEYVFIDTAGLRRKSKIKEDIERYSIIRTVSAVERCNVAVLV 266


>gi|163813998|ref|ZP_02205391.1| hypothetical protein COPEUT_00150 [Coprococcus eutactus ATCC 27759]
 gi|158450692|gb|EDP27687.1| hypothetical protein COPEUT_00150 [Coprococcus eutactus ATCC 27759]
          Length = 445

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  D++   Y   + DT GI  ET
Sbjct: 11  VAIVGRPNVGKSTLFNVLAGEKISIVQDTPGVTRDRIYADINWLDYNFTLIDTGGIEPET 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           D+I+ K   ++  + +E AD+I+ + ++
Sbjct: 71  DNIILKSMREQAEIAIETADVIIFMTDV 98



 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           SS+  + D+L   +++ SH  +    E+     +I I+G  N GKSS+ N L  +D  IV
Sbjct: 154 SSRLGIGDML---DEVVSHFDESAKEEVEDERPRIAIIGKPNVGKSSIINKLLGEDRVIV 210

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILL 304
           +DI GTTRD +  ++   G      DTAG+R+   I   +E+  I RT   VE  ++ +L
Sbjct: 211 SDIAGTTRDAIDTEVVRNGREYVFIDTAGLRKKSKIKEDIERYSIIRTVSAVERCNVAVL 270

Query: 305 L 305
           +
Sbjct: 271 V 271


>gi|219669400|ref|YP_002459835.1| GTP-binding protein EngA [Desulfitobacterium hafniense DCB-2]
 gi|254783150|sp|B8G2P9|DER_DESHD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|219539660|gb|ACL21399.1| small GTP-binding protein [Desulfitobacterium hafniense DCB-2]
          Length = 441

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L +++ SH  +    E+  +  +I ++G  N GKSSL N L  ++  IV++IPGTTRD +
Sbjct: 156 LLDEVVSHFPEDIEEEVDPDTIRIAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDAI 215

Query: 259 TIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLL 305
               + EG    I DTAG+R     +++ E+  + R+   V+ +D+IL+L
Sbjct: 216 DSAFEHEGKHYIIIDTAGMRRKGRIEELTEQYSVSRSLRAVDRSDVILML 265



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN LA   VAIV + PG TRD L  D +  G    I DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLFNRLAGGLVAIVENRPGVTRDRLYRDSEWLGRKFTIIDTGGIEFVN 65

Query: 282 D--IVEKEGIKRTFLEVENADLILLL 305
           +   +  +  ++  + +E AD+I+ +
Sbjct: 66  ENTSISAQMRRQAEIAIEEADVIVFV 91


>gi|111115337|ref|YP_709955.1| GTP-binding protein EngA [Borrelia afzelii PKo]
 gi|122956350|sp|Q0SMZ9|DER_BORAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|110890611|gb|ABH01779.1| GTP-binding protein [Borrelia afzelii PKo]
          Length = 433

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N+GKS+L N L+  +++IV+D PGTTRD +   L   G + +I DTAGIR  
Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEISIVSDKPGTTRDFIKTKLTRNGKVFEIIDTAGIRRR 234

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++IVE   + R    ++  D++ LL  I+ K+E++
Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLL--IDVKEELT 270



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I  +  G TRD++     +  +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITENTYGVTRDLVEEVCKVGSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D + K  +++    +E  DLILL+ ++N
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDVN 94


>gi|89894997|ref|YP_518484.1| hypothetical protein DSY2251 [Desulfitobacterium hafniense Y51]
 gi|122482578|sp|Q24VA2|DER_DESHY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|89334445|dbj|BAE84040.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 441

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L +++ SH  +    E+  +  +I ++G  N GKSSL N L  ++  IV++IPGTTRD +
Sbjct: 156 LLDEVVSHFPEDIEEEVDPDTIRIAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDAI 215

Query: 259 TIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLL 305
               + EG    I DTAG+R     +++ E+  + R+   V+ +D+IL+L
Sbjct: 216 DSAFEHEGKHYIIIDTAGMRRKGRIEELTEQYSVSRSLRAVDRSDVILML 265



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN LA   VAIV + PG TRD L  D +  G    I DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLFNRLAGGLVAIVENRPGVTRDRLYRDSEWLGRKFTIIDTGGIEFVN 65

Query: 282 D--IVEKEGIKRTFLEVENADLILLL 305
           +   +  +  ++  + +E AD+I+ +
Sbjct: 66  ENTPITAQMRRQAEIAIEEADVIVFV 91


>gi|91225135|ref|ZP_01260357.1| GTP-binding protein EngA [Vibrio alginolyticus 12G01]
 gi|269965174|ref|ZP_06179308.1| GTP-binding protein [Vibrio alginolyticus 40B]
 gi|91190078|gb|EAS76349.1| GTP-binding protein EngA [Vibrio alginolyticus 12G01]
 gi|269830160|gb|EEZ84387.1| GTP-binding protein [Vibrio alginolyticus 40B]
          Length = 498

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 37/223 (16%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED+  F  +E L +      D +   ++ +   +     K+ I+G  N GKS+L N +
Sbjct: 176 EIEDLTGFEDEEPLVE------DYTEEDAEAEFKRLQEQPIKLAIIGRPNVGKSTLTNRI 229

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEV 296
             ++  +V D+PGTTRD + I ++ +G    + DTAG+R     ++ VEK  + +T   V
Sbjct: 230 LGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRINETVEKFSVVKTLKAV 289

Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFI-------GTKSDLYSTYTEEYD- 340
           E+A+++LL+  I++++ IS        F  N     +       G  SD+  +  +E D 
Sbjct: 290 EDANVVLLV--IDARENISDQDLSLLGFALNAGRSIVIAVNKWDGLDSDVKESVKKELDR 347

Query: 341 ----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                     H IS+  G G+  L   I+   ++   ++  S+
Sbjct: 348 RLGFVDFARIHFISALHGTGVGHLFESIQEAYNSATTRVGTSV 390



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       L E +   + DT GI  T
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           ++ VE +  +++   ++ AD++L L
Sbjct: 65  EEGVETKMAEQSLAAIDEADVVLFL 89


>gi|33593199|ref|NP_880843.1| GTP-binding protein EngA [Bordetella pertussis Tohama I]
 gi|33597408|ref|NP_885051.1| GTP-binding protein EngA [Bordetella parapertussis 12822]
 gi|33602148|ref|NP_889708.1| GTP-binding protein EngA [Bordetella bronchiseptica RB50]
 gi|41017018|sp|Q7VWL4|DER_BORPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|41017021|sp|Q7W6Q0|DER_BORPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|41017022|sp|Q7WHN4|DER_BORBR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|33563574|emb|CAE42473.1| putative GTP-binding protein [Bordetella pertussis Tohama I]
 gi|33573835|emb|CAE38143.1| putative GTP-binding protein [Bordetella parapertussis]
 gi|33576586|emb|CAE33664.1| putative GTP-binding protein [Bordetella bronchiseptica RB50]
 gi|332382610|gb|AEE67457.1| GTP-binding protein EngA [Bordetella pertussis CS]
          Length = 451

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 33/196 (16%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +++ +  K+ I+G  N GKS+L N L  ++  I  D+PGTTRD + ID + +G    + D
Sbjct: 180 DVVDHRIKLAIVGRPNVGKSTLINTLLGEERVIAFDMPGTTRDAIEIDFERDGRKYTLID 239

Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI----- 325
           TAG+R+   +   +EK  + +T   +E ++++LL+  I+++ E+S        F+     
Sbjct: 240 TAGLRKRGKVFEAIEKFSVIKTLQAIEASNVVLLM--IDAQAEVSEQDAHIAGFVLETGR 297

Query: 326 ----------GTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSN 364
                     G  SD       E+            H IS+  G+G++ L+  + +  + 
Sbjct: 298 AVVVAINKWDGLDSDQRERIEREFQRKLRFLGFARMHTISALKGQGVKPLLKSVNAAHAA 357

Query: 365 KFKKLPFSIPSHKRHL 380
            F KL  S P   R L
Sbjct: 358 AFAKL--STPRLTREL 371



 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D  G TRD    +  +      + DT G     
Sbjct: 7   VALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYGEGRVGDTPFLVIDTGGF---- 62

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   +  AD+++ L
Sbjct: 63  EPVAKDGILAEMARQTRQAIAEADVVVFL 91


>gi|219685247|ref|ZP_03540067.1| ribosome-associated GTPase EngA [Borrelia garinii Far04]
 gi|219673343|gb|EED30362.1| ribosome-associated GTPase EngA [Borrelia garinii Far04]
          Length = 433

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N+GKS+L N L+  +++IV+D PGTTRD +   L   G + +I DTAGIR  
Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKTKLTRNGKVFEIIDTAGIRRR 234

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              +++VE   I R    ++  D++ LL  I+ K+E++
Sbjct: 235 ARVNEVVEYYSINRALKVIDMVDIVFLL--IDVKEELT 270



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     +  +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D + K  +++    +E  DLILL+ ++N
Sbjct: 66  KDEISKIVVQKVLSSLEQVDLILLVLDVN 94


>gi|216263461|ref|ZP_03435456.1| ribosome-associated GTPase EngA [Borrelia afzelii ACA-1]
 gi|215980305|gb|EEC21126.1| ribosome-associated GTPase EngA [Borrelia afzelii ACA-1]
          Length = 433

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N+GKS+L N L+  +++IV+D PGTTRD +   L   G + +I DTAGIR  
Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEISIVSDKPGTTRDFIKTKLTRNGKVFEIIDTAGIRRR 234

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++IVE   + R    ++  D++ LL  I+ K+E++
Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLL--IDVKEELT 270



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I  +  G TRD++     +  +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITENTYGVTRDLVEEVCKVGSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D + K  +++    +E  DLILL+ ++N
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDVN 94


>gi|163848650|ref|YP_001636694.1| GTP-binding protein EngA [Chloroflexus aurantiacus J-10-fl]
 gi|222526586|ref|YP_002571057.1| GTP-binding protein EngA [Chloroflexus sp. Y-400-fl]
 gi|189037140|sp|A9WHH9|DER_CHLAA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783145|sp|B9LBT6|DER_CHLSY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|163669939|gb|ABY36305.1| small GTP-binding protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450465|gb|ACM54731.1| small GTP-binding protein [Chloroflexus sp. Y-400-fl]
          Length = 449

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKSSL N L  ++ ++V+ IPGTTRD +   +   G  + + DTAGIR  
Sbjct: 184 RIAIVGRPNVGKSSLLNRLLGQERSVVSSIPGTTRDPIDTTITYHGEPITLIDTAGIRRA 243

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +EK  + RT   +E  D+ LLL
Sbjct: 244 GKIERGIEKYSVLRTLRAIERCDVALLL 271



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---R 278
           + I+G  N GKS+ FN L  +  AIV D+PGTTRD L  D    G    + DTAG+    
Sbjct: 6   VAIVGRPNVGKSTFFNRLIGERRAIVEDLPGTTRDRLYGDTFWNGREFTVVDTAGVLFGG 65

Query: 279 ETDDIVEKEGIKRTFLEVENA 299
           E  ++ E E  +RT  + E+A
Sbjct: 66  EDPNLPEAEIARRTRAQAEHA 86


>gi|269103271|ref|ZP_06155968.1| GTP-binding protein EngA [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163169|gb|EEZ41665.1| GTP-binding protein EngA [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 499

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 82/141 (58%), Gaps = 6/141 (4%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKN-DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           S+EE   +  S E LN +  ++N ++S   ++     +     K+ I+G  N GKS+L N
Sbjct: 169 SDEELESDEISIEDLNSVAEIENANLSEQDAEAAYKRLQEQPIKLAIIGRPNVGKSTLTN 228

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFL 294
            +  ++  +V D+PGTTRD + I ++ +G    + DTAGIR   ++   VEK  + +T  
Sbjct: 229 RILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRRKNMHEAVEKFSVIQTLK 288

Query: 295 EVENADLILLLKEINSKKEIS 315
            VE+A+++LL+  I++++ IS
Sbjct: 289 AVEDANVVLLI--IDARENIS 307



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEINEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++ + +E AD++L L
Sbjct: 65  EGVETKMAEQSLMAIEEADVVLFL 88


>gi|33862476|ref|NP_894036.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9313]
 gi|41017013|sp|Q7V8X0|DER_PROMM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|33640589|emb|CAE20378.1| GTP-binding protein (HSR1-related):AAA ATPase superfamily
           [Prochlorococcus marinus str. MIT 9313]
          Length = 455

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD +   L+ EG+  ++ DTAGIR  
Sbjct: 179 QMAIIGRPNVGKSSLLNAICGEPRAIVSPIRGTTRDTIDTRLEREGHPWRLIDTAGIRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  +E +D+ +L+
Sbjct: 239 RSVNYGPEFFGINRSFKAIERSDVCVLV 266



 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVDDKPGVTRDRTYQDGFWGDREFKVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|322514868|ref|ZP_08067886.1| ribosome-associated GTPase EngA [Actinobacillus ureae ATCC 25976]
 gi|322119172|gb|EFX91317.1| ribosome-associated GTPase EngA [Actinobacillus ureae ATCC 25976]
          Length = 505

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 36/235 (15%)

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE---IIRNGYKIVILGHS 228
           + AD     EED  N  + E   D  F   + ++ + +    E   I     KI I+G  
Sbjct: 166 LNADQAVENEEDSANEEADEWDTDFDFDNEEDTALLDEALEDESESIEDKNIKIAIVGRP 225

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VE 285
           N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    I DTAG+R+   +   VE
Sbjct: 226 NVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVNLAVE 285

Query: 286 KEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI-------------FIGTKS 329
           K  + +T   +++A+++LL    +E  S +++S    + FI             + G   
Sbjct: 286 KFSVIKTLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVVNKWDGLSQ 342

Query: 330 DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           D+      E D           H IS+  G G+  L + +K   +   +K   S+
Sbjct: 343 DIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTSM 397



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFL 88


>gi|269215396|ref|ZP_06159250.1| ribosome-associated GTPase EngA [Slackia exigua ATCC 700122]
 gi|269130883|gb|EEZ61958.1| ribosome-associated GTPase EngA [Slackia exigua ATCC 700122]
          Length = 440

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   + I+G  NAGKSSL N L  K+ +IV+D+ GTTRD +   ++ EG    I DTAG+
Sbjct: 179 NIVNVAIIGRPNAGKSSLTNRLIGKERSIVSDVAGTTRDAIDTTIEHEGTFYTIVDTAGL 238

Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305
           R   + D  VE  G  R    ++ AD+ LL+
Sbjct: 239 RRKAQIDQDVEYYGFVRAMRAIDRADVALLV 269



 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+  N +   + AIV ++ G TRD    + +  G    + DT GI   D
Sbjct: 8   VAVVGRPNVGKSTFVNRITHGNDAIVHEMRGVTRDRSYHEAEWSGVHFTLVDTGGIEMGD 67

Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305
           D V +  I+ + F+  E AD I+ +
Sbjct: 68  DDVFQGSIREQAFVGAEEADAIVFI 92


>gi|145628971|ref|ZP_01784770.1| GTP-binding protein EngA [Haemophilus influenzae 22.1-21]
 gi|144978474|gb|EDJ88197.1| GTP-binding protein EngA [Haemophilus influenzae 22.1-21]
          Length = 504

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393

Query: 371 FSI 373
            S+
Sbjct: 394 TSL 396



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIVGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L ++ AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFL 89


>gi|124023844|ref|YP_001018151.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9303]
 gi|123964130|gb|ABM78886.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str.
           MIT 9303]
          Length = 461

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD +   L+ EG+  ++ DTAGIR  
Sbjct: 185 QMAIIGRPNVGKSSLLNAICGEPRAIVSPIRGTTRDTIDTRLEREGHPWRLIDTAGIRRR 244

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  +E +D+ +L+
Sbjct: 245 RSVNYGPEFFGINRSFKAIERSDVCVLV 272



 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 12  VAIIGRPNVGKSTLVNRLCRSREAIVDDKPGVTRDRTYQDGFWGDREFKVVDTGGLVFDD 71

Query: 282 D 282
           D
Sbjct: 72  D 72


>gi|225551948|ref|ZP_03772888.1| ribosome-associated GTPase EngA [Borrelia sp. SV1]
 gi|225370946|gb|EEH00376.1| ribosome-associated GTPase EngA [Borrelia sp. SV1]
          Length = 433

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N+GKS+L N L+  ++AIV+D PGTTRD +       G + ++ DTAGIR  
Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRR 234

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++IVE   + R    ++  D++ LL  I+ K+E++
Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLL--IDVKEELT 270



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D + K  +++    ++  DLILL+ +IN
Sbjct: 66  KDEISKIVVQKVLSSLKKVDLILLVLDIN 94


>gi|198275294|ref|ZP_03207825.1| hypothetical protein BACPLE_01453 [Bacteroides plebeius DSM 17135]
 gi|198271877|gb|EDY96147.1| hypothetical protein BACPLE_01453 [Bacteroides plebeius DSM 17135]
          Length = 394

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 90/166 (54%), Gaps = 20/166 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276
           N   I + G  NAGKSSL NAL  +D A+V+DIPGTT D +   +++ G    +  DTAG
Sbjct: 8   NRLHIGLFGKRNAGKSSLINALTHQDTALVSDIPGTTTDPVFKAMEIHGLGPCVFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDFIFIGTKS 329
             +  ++ E   I++T   +E  D+ L++       +E++ ++ +   KN+  I+I  K 
Sbjct: 68  FDDEGELGELR-IRQTQRALEKTDIALMVCTDEHLDEELHWQRLLK-EKNVPVIWILNKC 125

Query: 330 DLYSTYTE----------EYDHLISSFTGEGLEELINKIKSILSNK 365
           DL S   +          +   L+S+ TG+GL++++  +++ L ++
Sbjct: 126 DLLSDAEQTMRRIEHQCGQVPLLVSTLTGKGLDDILRSLRNKLPDE 171


>gi|194365440|ref|YP_002028050.1| GTP-binding protein EngA [Stenotrophomonas maltophilia R551-3]
 gi|238693498|sp|B4SSW8|DER_STRM5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|194348244|gb|ACF51367.1| small GTP-binding protein [Stenotrophomonas maltophilia R551-3]
          Length = 465

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +I  +G  N GKS+L N +  ++  I +D+PGTTRD + +DL+ +G   ++ DTAG+
Sbjct: 177 NRIRIAFVGRPNVGKSTLVNRILGEERMIASDVPGTTRDSIAVDLERDGREYRLIDTAGL 236

Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305
           R     D++VEK  + +T   +E   + +L+
Sbjct: 237 RRRSRVDEVVEKFSVVKTMQSIEQCQVAVLM 267



 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 12/72 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS++FNAL +   A+V D PG TRD    V  +D D    +V   DT GI
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEDNHFLVV---DTGGI 61

Query: 278 RETDDIVEKEGI 289
            E     E+EG+
Sbjct: 62  AE-----EEEGL 68


>gi|301155940|emb|CBW15410.1| predicted GTP-binding protein [Haemophilus parainfluenzae T3T1]
          Length = 506

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 278

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 279 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 335

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 336 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 395

Query: 371 FSI 373
            S+
Sbjct: 396 TSL 398



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 18/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANISGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDL- 331
           + VE++  +++ L +E AD++L L          +I     +    N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLTAADIGIANYLRQRTNKTTVVVANKTDGI 125

Query: 332 -YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368
              ++  E+  L       I++  G G+ +L+ ++ + L+ K ++
Sbjct: 126 DADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPLAEKLQE 170


>gi|71893425|ref|YP_278871.1| GTP-binding protein EngA [Mycoplasma hyopneumoniae J]
          Length = 434

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 29/179 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ ++G  NAGKSSL N L  ++ +I+++IPGTTRD ++    + G  ++I DTAGIR+
Sbjct: 172 FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRK 231

Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              + E        R F  ++ ADL L+L +               +F +N   I +  K
Sbjct: 232 KSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFDLRIAGYAFERNKPIILVINK 291

Query: 329 SDLYSTYT---EEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKL 369
            DL    T   +EY                  IS+ TGE + +LI+ I  + +N  KK+
Sbjct: 292 WDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQVKNNLEKKI 350



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G SN GKS+LFN +A K ++I   +PG TRD +  ++    +   + DT GI+  +
Sbjct: 6   VALVGKSNVGKSTLFNRIAGKKISITNPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIEN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL----KEINS 310
           +  +     +  + +E AD+++ +    KEI+S
Sbjct: 66  ENFQDLVRIQVQIALEEADILVWVLDGTKEIDS 98


>gi|220929546|ref|YP_002506455.1| GTP-binding protein EngA [Clostridium cellulolyticum H10]
 gi|254783147|sp|B8I442|DER_CLOCE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|219999874|gb|ACL76475.1| small GTP-binding protein [Clostridium cellulolyticum H10]
          Length = 441

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N++  ++  IV++IPGTTRD +   ++ +G      DTAGIR  
Sbjct: 179 KVAVVGKPNAGKSSLINSILGENRVIVSNIPGTTRDAIDTHVEKDGQKYTFIDTAGIRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +EK    R++  VE AD+ L++
Sbjct: 239 SKISENIEKYSTIRSWTAVERADVCLIM 266



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+ FN LA   ++IV D PG TRD +  +++       + DT GI   +
Sbjct: 6   VAVVGRPNVGKSTFFNYLAGSRISIVEDTPGVTRDRIYTEIEWRNTKFTLIDTGGIEPYS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+ ++  ++  + +E AD+I+ +
Sbjct: 66  EDIIMQQMKRQAEIAIETADVIIFM 90


>gi|54020024|ref|YP_115589.1| GTP-binding protein EngA [Mycoplasma hyopneumoniae 232]
 gi|53987197|gb|AAV27398.1| putative GTP-binding protein [Mycoplasma hyopneumoniae 232]
          Length = 433

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 29/179 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ ++G  NAGKSSL N L  ++ +I+++IPGTTRD ++    + G  ++I DTAGIR+
Sbjct: 171 FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRK 230

Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              + E        R F  ++ ADL L+L +               +F +N   I +  K
Sbjct: 231 KSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFDLRIAGYAFERNKPIILVINK 290

Query: 329 SDLYSTYT---EEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKL 369
            DL    T   +EY                  IS+ TGE + +LI+ I  + +N  KK+
Sbjct: 291 WDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQVKNNLEKKI 349



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 14/98 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G SN GKS+LFN +A K ++I   +PG TRD +  ++    +   + DT GI+   
Sbjct: 5   VALVGKSNVGKSTLFNRIAGKKISITDPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQ--- 61

Query: 282 DIVEKEGIK-----RTFLEVENADLILLL----KEINS 310
             +E E  +     +  + +E AD+++ +    KEI+S
Sbjct: 62  --IENENFQDLIRIQVQIALEEADILVWVLDGTKEIDS 97


>gi|302391816|ref|YP_003827636.1| ribosome-associated GTPase EngA [Acetohalobium arabaticum DSM 5501]
 gi|302203893|gb|ADL12571.1| ribosome-associated GTPase EngA [Acetohalobium arabaticum DSM 5501]
          Length = 438

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 70/124 (56%), Gaps = 8/124 (6%)

Query: 187 FSSKEVLN--DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            S+K  LN  D+L   +++ SH S  + GE   +  +I ++G  N GKSSL N++  K+ 
Sbjct: 146 ISAKHALNTGDLL---DEVISHFSTEETGEYDEDTIRISVIGRPNVGKSSLVNSILGKER 202

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADL 301
            IV D+PGTTRD +    ++      I DTAG+R+   +   +EK  + R+   V+ +D+
Sbjct: 203 VIVNDVPGTTRDAIDTYFEVGDNQFVIIDTAGMRKRSKVEAGIEKYSVIRSLKAVDRSDV 262

Query: 302 ILLL 305
            L++
Sbjct: 263 ALMV 266



 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +    ++IV D P  TRD L  + +       + DT G+  ++
Sbjct: 6   VAIVGRPNVGKSTLFNRIVGNRISIVEDEPSITRDRLYGEGEWLDNHFLVVDTGGLDLDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +  ++ E  ++  L +E A+++L +
Sbjct: 66  EAELKDEVRQQAELAIEEAEVVLFV 90


>gi|325578764|ref|ZP_08148811.1| ribosome-associated GTPase EngA [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159588|gb|EGC71720.1| ribosome-associated GTPase EngA [Haemophilus parainfluenzae ATCC
           33392]
          Length = 506

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 278

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 279 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNTGRSLVIVV 335

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 336 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 395

Query: 371 FSI 373
            S+
Sbjct: 396 TSL 398



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 18/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANISGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDL- 331
           + VE++  +++ L +E AD++L L          +I     +    N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLTAADIGIANYLRQRTNKTTVVVANKTDGI 125

Query: 332 -YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368
              ++  E+  L       I++  G G+ +L+ ++ + L+ K ++
Sbjct: 126 DADSHCAEFYQLGLGKIEQIAASQGRGVTQLMEQVLAPLAEKLQE 170


>gi|144227450|gb|AAZ44160.2| GTP-binding protein EngA [Mycoplasma hyopneumoniae J]
          Length = 433

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 29/179 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ ++G  NAGKSSL N L  ++ +I+++IPGTTRD ++    + G  ++I DTAGIR+
Sbjct: 171 FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRK 230

Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              + E        R F  ++ ADL L+L +               +F +N   I +  K
Sbjct: 231 KSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFDLRIAGYAFERNKPIILVINK 290

Query: 329 SDLYSTYT---EEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKL 369
            DL    T   +EY                  IS+ TGE + +LI+ I  + +N  KK+
Sbjct: 291 WDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQVKNNLEKKI 349



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G SN GKS+LFN +A K ++I   +PG TRD +  ++    +   + DT GI+  +
Sbjct: 5   VALVGKSNVGKSTLFNRIAGKKISITNPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIEN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL----KEINS 310
           +  +     +  + +E AD+++ +    KEI+S
Sbjct: 65  ENFQDLVRIQVQIALEEADILVWVLDGTKEIDS 97


>gi|309782317|ref|ZP_07677044.1| ribosome-associated GTPase EngA [Ralstonia sp. 5_7_47FAA]
 gi|308918935|gb|EFP64605.1| ribosome-associated GTPase EngA [Ralstonia sp. 5_7_47FAA]
          Length = 376

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 64/101 (63%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + DTAG+
Sbjct: 108 HGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGL 167

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R+   +   +EK  + +T   + +A++++L+  ++++++IS
Sbjct: 168 RKRGKVFEAIEKFSVVKTLQSIADANVVVLI--LDAQQDIS 206


>gi|187928156|ref|YP_001898643.1| GTP-binding protein EngA [Ralstonia pickettii 12J]
 gi|238691801|sp|B2U9V3|DER_RALPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|187725046|gb|ACD26211.1| small GTP-binding protein [Ralstonia pickettii 12J]
          Length = 447

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 64/101 (63%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + DTAG+
Sbjct: 179 HGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGL 238

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R+   +   +EK  + +T   + +A++++L+  ++++++IS
Sbjct: 239 RKRGKVFEAIEKFSVVKTLQSIADANVVVLI--LDAQQDIS 277



 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V DIPG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADIPGLTRDRHYGEGRVGDRPFIAIDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V KEGI     K+T   V  AD+++ +
Sbjct: 61  EPVAKEGIVAEMAKQTRQAVVEADVVIFI 89


>gi|226324619|ref|ZP_03800137.1| hypothetical protein COPCOM_02403 [Coprococcus comes ATCC 27758]
 gi|225207067|gb|EEG89421.1| hypothetical protein COPCOM_02403 [Coprococcus comes ATCC 27758]
          Length = 442

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 29/174 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSS+ N L  KD  IV+DI GTTRD +  ++   G      DTAG+R  
Sbjct: 179 RVAIVGKPNVGKSSIINRLIGKDRVIVSDIAGTTRDAIDTEVVHNGKEYVFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKS 329
           + I   +E+  I RT   VE AD++L+       + E ++K   I+  +    I +  K 
Sbjct: 239 NKIKEELERYSIIRTVTAVERADVVLVVIDAAEGVTEQDAKIAGIAHERGKGVIIVVNKW 298

Query: 330 DLY---STYTEEYDHLI---------------SSFTGEGLEELINKIKSILSNK 365
           D        T EY+H I               S+ TG+ L +L + I +++ N+
Sbjct: 299 DAIEKNDKTTREYEHQIRMVLSFLPYAEIMYVSALTGQRLPKLFDMIDTVIENQ 352



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + +AIV D PG TRD +  +++       + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEKIAIVKDTPGVTRDRIYAEVNWLDKEFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            D++  +  ++  + ++ AD+IL + ++
Sbjct: 66  RDVILSQMREQAQIAIDTADVILFMTDV 93


>gi|254521460|ref|ZP_05133515.1| GTP-binding protein [Stenotrophomonas sp. SKA14]
 gi|219719051|gb|EED37576.1| GTP-binding protein [Stenotrophomonas sp. SKA14]
          Length = 465

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +I  +G  N GKS+L N +  ++  I +D+PGTTRD + +DL+ +G   ++ DTAG+
Sbjct: 177 NRIRIAFVGRPNVGKSTLVNRILGEERMIASDVPGTTRDSIAVDLERDGREYRLIDTAGL 236

Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305
           R     D++VEK  + +T   +E   + +L+
Sbjct: 237 RRRSRVDEVVEKFSVVKTMQSIEQCQVAVLM 267



 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 12/72 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS++FNAL +   A+V D PG TRD    V  +D D    +V   DT GI
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEDNHFLVV---DTGGI 61

Query: 278 RETDDIVEKEGI 289
            E     E+EG+
Sbjct: 62  AE-----EEEGL 68


>gi|145633562|ref|ZP_01789290.1| GTP-binding protein EngA [Haemophilus influenzae 3655]
 gi|144985768|gb|EDJ92382.1| GTP-binding protein EngA [Haemophilus influenzae 3655]
          Length = 504

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393

Query: 371 FSI 373
            S+
Sbjct: 394 TSL 396



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFILIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L ++ AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFL 89


>gi|241662759|ref|YP_002981119.1| GTP-binding protein EngA [Ralstonia pickettii 12D]
 gi|240864786|gb|ACS62447.1| small GTP-binding protein [Ralstonia pickettii 12D]
          Length = 447

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 64/101 (63%), Gaps = 5/101 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + DTAG+
Sbjct: 179 HGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGL 238

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R+   +   +EK  + +T   + +A++++L+  ++++++IS
Sbjct: 239 RKRGKVFEAIEKFSVVKTLQSIADANVVVLI--LDAQQDIS 277



 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V DIPG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADIPGLTRDRHYGEGRVGDRPFIAIDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V KEGI     K+T   V  AD+++ +
Sbjct: 61  EPVAKEGIVAEMAKQTRQAVVEADVVIFI 89


>gi|33239840|ref|NP_874782.1| GTP-binding protein EngA [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|41017014|sp|Q7VDI8|DER_PROMA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|33237366|gb|AAP99434.1| Predicted GTPase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 456

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD +   +  EG L K+ DTAGIR  
Sbjct: 179 QVAIVGRPNVGKSSLLNAICGEKRAIVSAIRGTTRDTIDTSIVREGKLWKLIDTAGIRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  +E +D+ +L+
Sbjct: 239 KSVNYGPEFFGINRSFKAIERSDVCVLV 266



 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+
Sbjct: 6   VAIIGRPNVGKSTLVNRLCQSREAIVHDQPGVTRDRSYQDGFWGDREFKLVDTGGL 61


>gi|145631633|ref|ZP_01787398.1| GTP-binding protein EngA [Haemophilus influenzae R3021]
 gi|144982767|gb|EDJ90296.1| GTP-binding protein EngA [Haemophilus influenzae R3021]
          Length = 504

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393

Query: 371 FSI 373
            S+
Sbjct: 394 TSL 396



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L ++ AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFL 89


>gi|260583275|ref|ZP_05851051.1| ribosome-associated GTPase EngA [Haemophilus influenzae NT127]
 gi|260093682|gb|EEW77594.1| ribosome-associated GTPase EngA [Haemophilus influenzae NT127]
          Length = 503

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 216 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 275

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 276 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 332

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 333 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 392

Query: 371 FSI 373
            S+
Sbjct: 393 TSL 395



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L ++ AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFL 89


>gi|295094896|emb|CBK83987.1| ribosome-associated GTPase EngA [Coprococcus sp. ART55/1]
          Length = 440

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  D++   Y   + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGEKISIVQDTPGVTRDRIYADINWLDYNFTLIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           D+I+ K   ++  + +E AD+IL + ++
Sbjct: 66  DNIILKSMREQAEIAIETADVILFMTDV 93



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 6/121 (4%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           SS+  + D+L   +++ SH ++    +      +I I+G  N GKSS+ N L  +D  IV
Sbjct: 149 SSRLGIGDML---DEVVSHFNESAKDDTEDERPRIAIIGKPNVGKSSIINKLLGEDRVIV 205

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILL 304
           +DI GTTRD +  ++   G      DTAG+R    I   +E+  I RT   VE  ++ +L
Sbjct: 206 SDIAGTTRDAVDTEIVRNGREYVFIDTAGLRRKSKIKEDIERYSIIRTVSAVERCNVAVL 265

Query: 305 L 305
           +
Sbjct: 266 V 266


>gi|229845438|ref|ZP_04465568.1| GTP-binding protein EngA [Haemophilus influenzae 6P18H1]
 gi|229811634|gb|EEP47333.1| GTP-binding protein EngA [Haemophilus influenzae 6P18H1]
          Length = 504

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393

Query: 371 FSI 373
            S+
Sbjct: 394 TSL 396



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L ++ AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFL 89


>gi|16272103|ref|NP_438305.1| GTP-binding protein EngA [Haemophilus influenzae Rd KW20]
 gi|68248744|ref|YP_247856.1| GTP-binding protein EngA [Haemophilus influenzae 86-028NP]
 gi|260581297|ref|ZP_05849114.1| ribosome-associated GTPase EngA [Haemophilus influenzae RdAW]
 gi|1175159|sp|P44536|DER_HAEIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|1573089|gb|AAC21807.1| GTP-binding protein [Haemophilus influenzae Rd KW20]
 gi|68056943|gb|AAX87196.1| GTP-binding protein EngA [Haemophilus influenzae 86-028NP]
 gi|260092046|gb|EEW75992.1| ribosome-associated GTPase EngA [Haemophilus influenzae RdAW]
          Length = 504

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393

Query: 371 FSI 373
            S+
Sbjct: 394 TSL 396



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L ++ AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFL 89


>gi|284048574|ref|YP_003398913.1| ribosome-associated GTPase EngA [Acidaminococcus fermentans DSM
           20731]
 gi|283952795|gb|ADB47598.1| ribosome-associated GTPase EngA [Acidaminococcus fermentans DSM
           20731]
          Length = 443

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 56/88 (63%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKSS+FN +  +  +IV+D+ GTTRD + + ++ +G      DTAG+R  
Sbjct: 179 KVAIIGRPNVGKSSIFNDIIGQTRSIVSDVAGTTRDAIDVPVEKDGQTYLFIDTAGMRRK 238

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + D+ +EK  I RT   V+ +D++LL+
Sbjct: 239 GKIDEPIEKYSIIRTLRAVDRSDVVLLV 266



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN  A   ++IV D PG TRD L  D +       + DT GI  + 
Sbjct: 6   VAIVGRPNVGKSTLFNIFADSRISIVEDTPGVTRDRLYADAEWLDRKFTMVDTGGIEMQN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D +     ++  + V  AD+IL +
Sbjct: 66  TDSIAVSIRQQAEVAVREADVILFV 90


>gi|148827277|ref|YP_001292030.1| GTP-binding protein EngA [Haemophilus influenzae PittGG]
 gi|148718519|gb|ABQ99646.1| GTP-binding protein EngA [Haemophilus influenzae PittGG]
          Length = 504

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393

Query: 371 FSI 373
            S+
Sbjct: 394 TSL 396



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L ++ AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFL 89


>gi|148825596|ref|YP_001290349.1| GTP-binding protein EngA [Haemophilus influenzae PittEE]
 gi|229847254|ref|ZP_04467357.1| GTP-binding protein EngA [Haemophilus influenzae 7P49H1]
 gi|148715756|gb|ABQ97966.1| GTP-binding protein EngA [Haemophilus influenzae PittEE]
 gi|229809797|gb|EEP45520.1| GTP-binding protein EngA [Haemophilus influenzae 7P49H1]
          Length = 504

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393

Query: 371 FSI 373
            S+
Sbjct: 394 TSL 396



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L ++ AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFL 89


>gi|325919426|ref|ZP_08181452.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Xanthomonas gardneri ATCC 19865]
 gi|325550092|gb|EGD20920.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Xanthomonas gardneri ATCC 19865]
          Length = 465

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 82/162 (50%), Gaps = 17/162 (10%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209
           W+ KL      +   +D ++EE V++  ++   +D++ L             ++ + +  
Sbjct: 106 WLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLEEVGARLPA 165

Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              GE++       +I  +G  N GKS+L N L  ++  I +++PGTTRD + +D+D +G
Sbjct: 166 EGAGELLDTDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDMDRDG 225

Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
              ++ DTAG+R   + ++ VEK    +T   +E   + +L+
Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267



 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS++FNAL +   A+V D PG TRD       LD E   + + DT GI
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEERPFI-VVDTGGI 61


>gi|145641461|ref|ZP_01797039.1| GTP-binding protein EngA [Haemophilus influenzae R3021]
 gi|145273752|gb|EDK13620.1| GTP-binding protein EngA [Haemophilus influenzae 22.4-21]
          Length = 504

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393

Query: 371 FSI 373
            S+
Sbjct: 394 TSL 396



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L ++ AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFL 89


>gi|319775992|ref|YP_004138480.1| GTP-binding protein [Haemophilus influenzae F3047]
 gi|329123858|ref|ZP_08252415.1| ribosome-associated GTPase EngA [Haemophilus aegyptius ATCC 11116]
 gi|317450583|emb|CBY86800.1| predicted GTP-binding protein [Haemophilus influenzae F3047]
 gi|327468821|gb|EGF14295.1| ribosome-associated GTPase EngA [Haemophilus aegyptius ATCC 11116]
          Length = 504

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393

Query: 371 FSI 373
            S+
Sbjct: 394 TSL 396



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L ++ AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFL 89


>gi|190574024|ref|YP_001971869.1| GTP-binding protein EngA [Stenotrophomonas maltophilia K279a]
 gi|229463762|sp|B2FNR1|DER_STRMK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|190011946|emb|CAQ45567.1| putative GTP-binding protein [Stenotrophomonas maltophilia K279a]
          Length = 465

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +I  +G  N GKS+L N +  ++  I +D+PGTTRD + +DL+ +G   ++ DTAG+
Sbjct: 177 NRIRIAFVGRPNVGKSTLVNRILGEERMIASDVPGTTRDSIAVDLERDGREYRLIDTAGL 236

Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305
           R     D++VEK  + +T   +E   + +L+
Sbjct: 237 RRRSRVDEVVEKFSVVKTMQSIEQCQVAVLM 267



 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS++FNAL +   A+V D PG TRD    V  +D D    +V   DT GI
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEDNHFLVV---DTGGI 61

Query: 278 RETDD 282
              D+
Sbjct: 62  AGEDE 66


>gi|188587902|ref|YP_001920548.1| GTP-binding protein EngA [Clostridium botulinum E3 str. Alaska E43]
 gi|238689667|sp|B2V3Z1|DER_CLOBA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|188498183|gb|ACD51319.1| ribosome-associated GTPase EngA [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 438

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + I+G  N GKS+LFN LA K ++IV D PG TRD +  + +   Y   + DT GI  T 
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTGGIEPTN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI+ K+  ++  + +E AD+I+ +
Sbjct: 66  DDIIMKQMRRQANIAIETADVIVFI 90



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N L  ++  IV+D+ GTTRD +   L+ E     + DTAG+R  
Sbjct: 178 RIAMIGKPNVGKSSLINKLLGEERLIVSDVAGTTRDAIDSYLETEQGKFILIDTAGLRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E+  + RT+  +E AD+ +L+
Sbjct: 238 SKVKEEIERYSVIRTYASIEKADVCILM 265


>gi|145640014|ref|ZP_01795612.1| GTP-binding protein EngA [Haemophilus influenzae PittII]
 gi|145270901|gb|EDK10820.1| GTP-binding protein EngA [Haemophilus influenzae PittII]
          Length = 504

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393

Query: 371 FSI 373
            S+
Sbjct: 394 TSL 396



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L ++ AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFL 89


>gi|251778692|ref|ZP_04821612.1| ribosome-associated GTPase EngA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083007|gb|EES48897.1| ribosome-associated GTPase EngA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 438

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + I+G  N GKS+LFN LA K ++IV D PG TRD +  + +   Y   + DT GI  T 
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTGGIEPTN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI+ K+  ++  + +E AD+I+ +
Sbjct: 66  DDIIMKQMRRQANIAIETADVIVFI 90



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N L  ++  IV+D+ GTTRD +   L+ E     + DTAG+R  
Sbjct: 178 RIAMIGKPNVGKSSLINKLLGEERLIVSDVAGTTRDAIDSYLETEQGKFILIDTAGLRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E+  + RT+  +E AD+ +L+
Sbjct: 238 SKVKEEIERYSVIRTYASIEKADVCILM 265


>gi|301168789|emb|CBW28380.1| predicted GTP-binding protein [Haemophilus influenzae 10810]
          Length = 503

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 216 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 275

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 276 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 332

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 333 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 392

Query: 371 FSI 373
            S+
Sbjct: 393 TSL 395



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L ++ AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFL 89


>gi|187935025|ref|YP_001885401.1| GTP-binding protein EngA [Clostridium botulinum B str. Eklund 17B]
 gi|238691598|sp|B2THQ9|DER_CLOBB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|187723178|gb|ACD24399.1| ribosome-associated GTPase EngA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 438

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + I+G  N GKS+LFN LA K ++IV D PG TRD +  + +   Y   + DT GI  T 
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTGGIEPTN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI+ K+  ++  + +E AD+I+ +
Sbjct: 66  DDIIMKQMRRQANIAIETADVIVFI 90



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N L  ++  IV+D+ GTTRD +   L+ E     + DTAG+R  
Sbjct: 178 RIAMIGKPNVGKSSLINKLLGEERLIVSDVAGTTRDAIDSYLETEQGKFILIDTAGLRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E+  + RT+  +E AD+ +L+
Sbjct: 238 SKVKEEIERYSVIRTYASIEKADVCILM 265


>gi|72080412|ref|YP_287470.1| GTP-binding protein EngA [Mycoplasma hyopneumoniae 7448]
          Length = 434

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 29/179 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ ++G  NAGKSSL N L  ++ +I+++IPGTTRD ++    + G  ++I DTAGIR+
Sbjct: 172 FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRK 231

Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              + E        R F  ++ ADL L+L +               +F +N   I +  K
Sbjct: 232 KSKLAESVDFYAFLRAFRSLDQADLTLILLDACHDFHHFDLRIAGYAFERNKPIILVINK 291

Query: 329 SDLYSTYT---EEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKL 369
            DL    T   +EY                  IS+ TGE + +LI+ I  + +N  KK+
Sbjct: 292 WDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQVKNNLEKKI 350



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G SN GKS+LFN +A K ++I   +PG TRD +  ++    +   + DT GI+  +
Sbjct: 6   VALVGKSNVGKSTLFNRIAGKKISITDPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIEN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL----KEINS 310
           +  +     +  + +E AD+++ +    KEI+S
Sbjct: 66  ENFQDLVRIQVQIALEEADILVWVLDGTKEIDS 98


>gi|219684291|ref|ZP_03539235.1| ribosome-associated GTPase EngA [Borrelia garinii PBr]
 gi|219672280|gb|EED29333.1| ribosome-associated GTPase EngA [Borrelia garinii PBr]
          Length = 433

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N+GKS+L N L+  +++IV+D PGTTRD +   L   G + +I DTAGIR  
Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKTKLTRNGKVFEIIDTAGIRRR 234

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              +++VE   + R    ++  D++ LL  I+ K+E++
Sbjct: 235 ARVNEVVEYYSVNRALKVIDMVDIVFLL--IDVKEELT 270



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     +  +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D + K  +++    +E  DLILL+ ++N
Sbjct: 66  KDEISKIVVQKVLSSLEQVDLILLVLDVN 94


>gi|54307962|ref|YP_128982.1| GTP-binding protein EngA [Photobacterium profundum SS9]
 gi|81828838|sp|Q6LU45|DER_PHOPR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|46912388|emb|CAG19180.1| putative GTP-binding protein [Photobacterium profundum SS9]
          Length = 493

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 81/143 (56%), Gaps = 10/143 (6%)

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           L  ++EE + + SS E +      K D++   ++     +     K+ I+G  N GKS+L
Sbjct: 166 LKGNDEEGLIDLSSVEDIE-----KADLTEEDAEAAYKRLQEQPIKLAIIGRPNVGKSTL 220

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKRT 292
            N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R     + +VEK  + +T
Sbjct: 221 TNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGVRRRKNMNQVVEKFSVIQT 280

Query: 293 FLEVENADLILLLKEINSKKEIS 315
              VE+A+++LL+  I++++ IS
Sbjct: 281 LKAVEDANVVLLI--IDARENIS 301



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      +LE +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   +E AD++L L
Sbjct: 65  EGVETKMAEQSLAAIEEADVVLFL 88


>gi|319898104|ref|YP_004136301.1| gtp-binding protein [Haemophilus influenzae F3031]
 gi|309750447|gb|ADO80431.1| GTP-binding protein EngA [Haemophilus influenzae R2866]
 gi|317433610|emb|CBY81994.1| predicted GTP-binding protein [Haemophilus influenzae F3031]
          Length = 504

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393

Query: 371 FSI 373
            S+
Sbjct: 394 TSL 396



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L ++ AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFL 89


>gi|144575266|gb|AAZ53447.2| GTP-binding protein EngA [Mycoplasma hyopneumoniae 7448]
          Length = 433

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 29/179 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ ++G  NAGKSSL N L  ++ +I+++IPGTTRD ++    + G  ++I DTAGIR+
Sbjct: 171 FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRK 230

Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              + E        R F  ++ ADL L+L +               +F +N   I +  K
Sbjct: 231 KSKLAESVDFYAFLRAFRSLDQADLTLILLDACHDFHHFDLRIAGYAFERNKPIILVINK 290

Query: 329 SDLYSTYT---EEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKL 369
            DL    T   +EY                  IS+ TGE + +LI+ I  + +N  KK+
Sbjct: 291 WDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQVKNNLEKKI 349



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G SN GKS+LFN +A K ++I   +PG TRD +  ++    +   + DT GI+  +
Sbjct: 5   VALVGKSNVGKSTLFNRIAGKKISITDPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIEN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL----KEINS 310
           +  +     +  + +E AD+++ +    KEI+S
Sbjct: 65  ENFQDLVRIQVQIALEEADILVWVLDGTKEIDS 97


>gi|145635317|ref|ZP_01791020.1| GTP-binding protein EngA [Haemophilus influenzae PittAA]
 gi|145267461|gb|EDK07462.1| GTP-binding protein EngA [Haemophilus influenzae PittAA]
          Length = 504

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393

Query: 371 FSI 373
            S+
Sbjct: 394 TSL 396



 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L ++ AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFL 89


>gi|145637903|ref|ZP_01793547.1| GTP-binding protein EngA [Haemophilus influenzae PittHH]
 gi|145268903|gb|EDK08862.1| GTP-binding protein EngA [Haemophilus influenzae PittHH]
          Length = 503

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 216 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 275

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 276 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 332

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 333 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 392

Query: 371 FSI 373
            S+
Sbjct: 393 TSL 395



 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L ++ AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFL 89


>gi|33152292|ref|NP_873645.1| GTP-binding protein EngA [Haemophilus ducreyi 35000HP]
 gi|41017016|sp|Q7VM29|DER_HAEDU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|33148515|gb|AAP96034.1| conserved putative GTP-binding protein [Haemophilus ducreyi
           35000HP]
          Length = 510

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 49/236 (20%)

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           D DF+ EED        +L++ L  +N  S          I     KI I+G  N GKS+
Sbjct: 191 DFDFNNEEDTA------LLDEALDEENSES----------IADKNIKIAIIGRPNVGKST 234

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKR 291
           L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+   I   VEK  + +
Sbjct: 235 LTNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYTIIDTAGVRKRGKINLAVEKFSVIK 294

Query: 292 TFLEVENADLILLL---KEINSKKEISFPKNIDFIFIGTKS-------------DLYSTY 335
           T   +++A+++LL    +E  S +++S    + FI    +S             D+    
Sbjct: 295 TLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVVNKWDGLSYDIKEQV 351

Query: 336 TEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
             E D           H IS+  G G+  L + +K   +   +K   S+ +   H+
Sbjct: 352 KSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTSMLTRILHM 407



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ G+   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGHDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E++  +++ L +E AD++L L
Sbjct: 65  EGIEEKMAEQSLLAIEEADVVLFL 88


>gi|302380361|ref|ZP_07268831.1| ribosome-associated GTPase EngA [Finegoldia magna ACS-171-V-Col3]
 gi|303233791|ref|ZP_07320445.1| ribosome-associated GTPase EngA [Finegoldia magna BVS033A4]
 gi|302311851|gb|EFK93862.1| ribosome-associated GTPase EngA [Finegoldia magna ACS-171-V-Col3]
 gi|302495225|gb|EFL54977.1| ribosome-associated GTPase EngA [Finegoldia magna BVS033A4]
          Length = 438

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G +N GKS+LFN L KK +AI  D PG TRD L ++ + +     + DT G+  ++
Sbjct: 6   VAIVGRANVGKSTLFNKLIKKRIAITQDDPGVTRDRLYMEAEWQNKYFTVVDTGGLEPKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           ++I+ K   K+T L +E AD+IL +
Sbjct: 66  NEIITKNIKKQTELAIETADVILFM 90



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKSSL N L  ++  IVTDI GTTRD +   ++ +G      DTAG+R+ 
Sbjct: 178 KVCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDAIDSKINYKGNEYVFIDTAGLRKR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VE+  + RT   ++ +D+ +L+
Sbjct: 238 KKIDTEVERYSVVRTLSAIDRSDICVLM 265


>gi|169824551|ref|YP_001692162.1| GTP-binding protein [Finegoldia magna ATCC 29328]
 gi|238687753|sp|B0S1N2|DER_FINM2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|167831356|dbj|BAG08272.1| GTP-binding protein [Finegoldia magna ATCC 29328]
          Length = 438

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G +N GKS+LFN L KK +AI  D PG TRD L ++ + +     + DT G+  ++
Sbjct: 6   VAIVGRANVGKSTLFNKLIKKRIAITQDDPGVTRDRLYMEAEWQNKYFTVVDTGGLEPKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           ++I+ K   K+T L +E AD+IL +
Sbjct: 66  NEIITKNIKKQTELAIETADVILFM 90



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKSSL N L  ++  IVTDI GTTRD +   ++ +G      DTAG+R+ 
Sbjct: 178 KVCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDAIDSKINYKGNEYIFIDTAGLRKR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VE+  + RT   ++ +D+ +L+
Sbjct: 238 KKIDTEVERYSVVRTLSAIDRSDICVLM 265


>gi|297588533|ref|ZP_06947176.1| ribosome-associated GTPase EngA [Finegoldia magna ATCC 53516]
 gi|297573906|gb|EFH92627.1| ribosome-associated GTPase EngA [Finegoldia magna ATCC 53516]
          Length = 438

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G +N GKS+LFN L KK +AI  D PG TRD L ++ + +     + DT G+  ++
Sbjct: 6   VAIVGRANVGKSTLFNKLIKKRIAITQDDPGVTRDRLYMEAEWQNKYFTVVDTGGLEPKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           ++I+ K   K+T L +E AD+IL +
Sbjct: 66  NEIITKNIKKQTELAIETADVILFM 90



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKSSL N L  ++  IVTDI GTTRD +   ++ +G      DTAG+R+ 
Sbjct: 178 KVCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDAIDSKINYKGNEYIFIDTAGLRKR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VE+  + RT   ++ +D+ +L+
Sbjct: 238 RKIDTEVERYSVVRTLSAIDRSDICVLM 265


>gi|309972741|gb|ADO95942.1| GTP-binding protein EngA [Haemophilus influenzae R2846]
          Length = 504

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + IK   +   +K+ 
Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393

Query: 371 FSI 373
            S+
Sbjct: 394 TSL 396



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L ++ AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFL 89


>gi|1162972|gb|AAB02035.1| similar to thdF genes from E. coli, B. subtilis and P. putida;
           possible involvement in thiophene and furan oxidation
           [Rhodobacter sphaeroides]
          Length = 98

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 60/100 (60%), Gaps = 6/100 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFFGLDGRILDK 63
           +TI+A+++    + ++++RLSGP   +  +       P P  R A+LR     +G +LD+
Sbjct: 2   DTIYALASARGKAGVAVLRLSGPRSHEAVQAF---GVPLPSLRHAALRRL-TWNGEVLDE 57

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP 103
            L+++F +  SFTGE SAE H+HG  A V+ +L  L+ +P
Sbjct: 58  ALVLLFGAGASFTGETSAELHLHGSPAAVSSVLRVLSGLP 97


>gi|224541354|ref|ZP_03681893.1| hypothetical protein CATMIT_00514 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525688|gb|EEF94793.1| hypothetical protein CATMIT_00514 [Catenibacterium mitsuokai DSM
           15897]
          Length = 435

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSL NA+  +D  IV++I GTTRD +    + +GY  +I DTAG+R+ 
Sbjct: 176 KVSIIGRPNVGKSSLTNAILGEDRVIVSNIEGTTRDAIDTAFEKDGYKYRIIDTAGMRKK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + R    VE +D+IL +
Sbjct: 236 GKVYENIEKYSVLRALKAVEQSDVILCV 263



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G +N GKS+LFN +  + V+IV D+PG TRD +           +I DT GI   +
Sbjct: 6   VAIVGRANVGKSTLFNRIIGERVSIVEDVPGVTRDRIYAKASWLTKEFRIIDTGGIELKN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  ADFTEQIKTQAEIAIEEADVIIFV 89


>gi|307245234|ref|ZP_07527325.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307254181|ref|ZP_07536026.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258646|ref|ZP_07540381.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306853878|gb|EFM86092.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306862881|gb|EFM94830.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867303|gb|EFM99156.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 506

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 278

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 279 GKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVV 335

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + +K   +   +K  
Sbjct: 336 NKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTS 395

Query: 371 FSI 373
            S+
Sbjct: 396 TSM 398



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFL 88


>gi|116075028|ref|ZP_01472288.1| GTP-binding protein EngA [Synechococcus sp. RS9916]
 gi|116067225|gb|EAU72979.1| GTP-binding protein EngA [Synechococcus sp. RS9916]
          Length = 455

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD +  +++ +G   K+ DTAGIR  
Sbjct: 179 QMAIVGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTNIERQGMPWKLVDTAGIRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  +E +D+ +L+
Sbjct: 239 RSVNYGPEFFGINRSFKAIERSDVCVLV 266



 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|291276972|ref|YP_003516744.1| putative GTP-binding protein [Helicobacter mustelae 12198]
 gi|290964166|emb|CBG40011.1| putative GTP-binding protein [Helicobacter mustelae 12198]
          Length = 466

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 3/86 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ILG  N GKSSLFN LA++ +AI +D+ GTT DV    + LEG+ ++I DT GI + 
Sbjct: 3   KIAILGKPNVGKSSLFNRLARERIAITSDVSGTTCDVNKKTIQLEGHPLQILDTGGIDKN 62

Query: 281 DDIVEKEGIKR-TFLEVENADLILLL 305
           +       IK+  F   E ADLIL +
Sbjct: 63  NQYF--SSIKKFAFQAAEMADLILYV 86



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSL NAL  KD ++V+ I GTT D +   +  + Y ++  DTAG+R  
Sbjct: 197 KIGIIGRVNVGKSSLLNALVGKDRSVVSPIEGTTLDPVDEGIIYKDYQLEFVDTAGLRRR 256

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINS 310
             I  +EK  + RT   +E +D+ LL+ ++++
Sbjct: 257 GKIRGLEKFALDRTGKMLEKSDIALLVLDVST 288


>gi|187478830|ref|YP_786854.1| GTP-binding protein EngA [Bordetella avium 197N]
 gi|115423416|emb|CAJ49950.1| GTP-binding protein [Bordetella avium 197N]
          Length = 451

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 70/115 (60%), Gaps = 6/115 (5%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           +  I+  + GE+ ++  K+ I+G  N GKS+L N L  ++  I  D+PGTTRD + I+ +
Sbjct: 170 ADEIADAEEGEV-QHRIKLAIVGRPNVGKSTLINTLMGEERVIAFDMPGTTRDAIEIEFE 228

Query: 264 LEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +G    + DTAG+R+   +   VEK  + +T   +E ++++LL+  ++++ EIS
Sbjct: 229 RDGRQYTLIDTAGLRKRGKVFEAVEKFSVIKTLQAIEASNVVLLM--LDAQSEIS 281



 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D  G TRD    +  +      + DT G     
Sbjct: 7   VALVGRPNVGKSTLFNRLTRSRAALVADYSGLTRDRHYGEGRVGDIPFIVIDTGGF---- 62

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     ++T   +  AD+++ L
Sbjct: 63  EPVAKDGILAEMARQTRQAIAEADVVVFL 91


>gi|269837313|ref|YP_003319541.1| small GTP-binding protein [Sphaerobacter thermophilus DSM 20745]
 gi|269786576|gb|ACZ38719.1| small GTP-binding protein [Sphaerobacter thermophilus DSM 20745]
          Length = 445

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  +   IV+ IPGTTRD +  ++   G  V + DTAGIR   
Sbjct: 184 IAIVGRPNVGKSALLNALLGQSRQIVSSIPGTTRDAVDTEITWAGNRVVLVDTAGIRRPG 243

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            I   +EK  + R+   VE AD+ +L+
Sbjct: 244 RIERGIEKYSVLRSTRAVERADVAVLV 270



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  +  AIV D+PGTTRD +  +    G    + DT G+    
Sbjct: 6   VAIVGRPNTGKSTLFNRLVGERRAIVEDLPGTTRDRIYAEASWGGVTFDVVDTGGLLSEQ 65

Query: 282 DI-------VEKEGIKRTFLEVENADLILLL 305
           +I       + +   ++  L +E AD+I+ +
Sbjct: 66  EIERASAAEIAQATQEQAELAIEQADVIVFM 96


>gi|328950011|ref|YP_004367346.1| GTP-binding protein engA [Marinithermus hydrothermalis DSM 14884]
 gi|328450335|gb|AEB11236.1| GTP-binding protein engA [Marinithermus hydrothermalis DSM 14884]
          Length = 431

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKSSL NA+  ++  IV++ PGTTRD + ++ D  G    + DTAGIR+ 
Sbjct: 176 RLAIIGRPNAGKSSLMNAILGEERVIVSEQPGTTRDAIDVEFDYGGQRFVLVDTAGIRKR 235

Query: 281 DDI-VEKEGIKRTFLEVENADLILLL 305
            +  VE   I+R+   +  AD+++L+
Sbjct: 236 PETAVEYFAIQRSHRVIREADVVVLV 261



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+VI+G  N GKSSL+N L  +  A+V D PG TRD+    ++ +    K+ DT G+   
Sbjct: 3   KVVIVGRPNVGKSSLYNRLLGRRDAVVADEPGVTRDLKEAVIETDRGRFKLVDTGGLWSG 62

Query: 281 DDIVEK--EGIKRTFLEVENADLILLL 305
           D    K  E + R    +++ADL+L L
Sbjct: 63  DAWEPKIQEKVDRA---IQDADLVLFL 86


>gi|194476538|ref|YP_002048717.1| GTP-binding protein EngA [Paulinella chromatophora]
 gi|171191545|gb|ACB42507.1| GTP-binding protein EngA [Paulinella chromatophora]
          Length = 456

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD +   ++ EGY  ++ DTAGIR  
Sbjct: 178 QLAIVGRPNVGKSSLLNAICGETRAIVSQIRGTTRDTIDTYVEREGYHWRLIDTAGIRRR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E   I R+F  +E +D+ LL+
Sbjct: 238 RSVDYGPELFSINRSFKAIERSDVCLLI 265


>gi|310827223|ref|YP_003959580.1| hypothetical protein ELI_1631 [Eubacterium limosum KIST612]
 gi|308738957|gb|ADO36617.1| hypothetical protein ELI_1631 [Eubacterium limosum KIST612]
          Length = 439

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  NAGKS+L N +   D  IV+D+PGTTRD +  ++   G    + DTAG+R+ 
Sbjct: 179 KIAVIGKPNAGKSTLINKMVGHDRLIVSDVPGTTRDAIDTEVRFNGRDYTLIDTAGLRKK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  I R    V+ +D++L+L
Sbjct: 239 KKIYEDIERYSIVRAIAAVDRSDVVLVL 266



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           + ++G  N GKS+LFN L  + +AIV D PG TRD +  D + + +   + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNKLVGERIAIVEDTPGVTRDRIIADAEWQNHHFTLIDTGGIEPHT 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            DDI+ +  ++   L ++ ADLI+LL
Sbjct: 66  KDDILLQMRVQAE-LAIDMADLIVLL 90


>gi|187918374|ref|YP_001883937.1| GTP-binding protein EngA [Borrelia hermsii DAH]
 gi|119861222|gb|AAX17017.1| GTP-binding protein [Borrelia hermsii DAH]
          Length = 438

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +FLKN +      GKL        KI I+G  N+GKS+L N LA  +V+IV+ I GTTRD
Sbjct: 162 IFLKNSV------GKLASEDNTDVKIGIIGKPNSGKSTLINFLAGDEVSIVSPIAGTTRD 215

Query: 257 VLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEI 308
            +       G + ++ DTAGIR     +++VE   + R    ++  D++ LL ++
Sbjct: 216 FIKARFQRNGKIFELIDTAGIRRRARVNELVEHYSVSRALRVIDMVDIVFLLVDV 270



 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++N   ++I G  N GKS+LFN L   + +I  ++ G TRD++     ++ Y   + D  
Sbjct: 6   VQNYKSVLIAGRPNVGKSTLFNKLLSSNRSITDEVYGVTRDLVKEVCTVDSYKFYLIDAG 65

Query: 276 G 276
           G
Sbjct: 66  G 66


>gi|134094495|ref|YP_001099570.1| GTP-binding protein EngA [Herminiimonas arsenicoxydans]
 gi|166198721|sp|A4G4K6|DER_HERAR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|133738398|emb|CAL61443.1| GTP-binding protein EngA [Herminiimonas arsenicoxydans]
          Length = 447

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 10/124 (8%)

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI F +      + + K   I     ++ I+G  N GKS+L N L  ++  I  D+PGTT
Sbjct: 161 DIAFAQRPPEEEVPESKDRSI-----RLAIVGRPNVGKSTLVNTLLGEERVIAFDLPGTT 215

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK 311
           RD + I  + EG L  + DTAGIR    +   +EK  + +T   +  A+++LLL  ++++
Sbjct: 216 RDSIEIPFEREGKLYTLIDTAGIRRRGKVFEAIEKFSVVKTLQSISEANVVLLL--LDAQ 273

Query: 312 KEIS 315
           ++IS
Sbjct: 274 QDIS 277



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRMGERPFLVIDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V KEGI     K+T   V  AD+++ +
Sbjct: 61  EPVAKEGIMHEMAKQTKQAVAEADVVIFI 89


>gi|317968893|ref|ZP_07970283.1| GTP-binding protein Der [Synechococcus sp. CB0205]
          Length = 454

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD +   ++ EG   K+ DTAGIR  
Sbjct: 178 QMAIVGRPNVGKSSLLNAVCGEKRAIVSPIRGTTRDTIDTSIEREGKPWKLLDTAGIRRR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  +E +D+ +L+
Sbjct: 238 RSVNYGPEYFGINRSFKAIERSDVCVLV 265



 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 30/61 (49%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD             K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQQGYWRDRHFKVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|312879956|ref|ZP_07739756.1| ribosome-associated GTPase EngA [Aminomonas paucivorans DSM 12260]
 gi|310783247|gb|EFQ23645.1| ribosome-associated GTPase EngA [Aminomonas paucivorans DSM 12260]
          Length = 447

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 91/182 (50%), Gaps = 29/182 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ ++G  N GKSSLFN+L  ++  +V+DIPGTTRD +   L  +G  ++I DTAG+R  
Sbjct: 177 RVALVGRPNVGKSSLFNSLLGEERTLVSDIPGTTRDTVDSLLVWKGMNLRIMDTAGLRRK 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI-----DFIFIGTKS 329
              D  +E     RTF  V+ +D+ ++L   +E+ ++++     ++       +    K 
Sbjct: 237 SRVDGALEYYSTVRTFQAVDRSDVTVVLLDAQELLAEQDKRLVGHVLDRGKGLVLGVNKW 296

Query: 330 DLYSTYTEEYDHL------------------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           DL     +  D +                  +S+ TG G++ ++  +K++  N+ + L  
Sbjct: 297 DLLPPTEDLGDRIRDRIREELPLVRHAPVVFLSAKTGRGVQRVLPYVKTVDENRRRHLKT 356

Query: 372 SI 373
           S+
Sbjct: 357 SV 358



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 35/56 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I ++G  N GKSSLFN L  K +AIV DIPG TRD L  + + +G    + DT GI
Sbjct: 4   IALVGRPNVGKSSLFNRLIGKRLAIVDDIPGVTRDRLYGEAEWDGKRFYLVDTGGI 59


>gi|317132122|ref|YP_004091436.1| ribosome-associated GTPase EngA [Ethanoligenens harbinense YUAN-3]
 gi|315470101|gb|ADU26705.1| ribosome-associated GTPase EngA [Ethanoligenens harbinense YUAN-3]
          Length = 441

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ ++G  NAGKSSL N +A ++  +V+DIPGTTRD +   ++ E       DTAGIR  
Sbjct: 178 RVAVIGKPNAGKSSLVNRIAGEERMLVSDIPGTTRDAVDTRIENEYGTFVFVDTAGIRRH 237

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +  + VE+  + R F  VE AD+ +++
Sbjct: 238 SKVQEAVERYSVMRAFSAVERADVCVMM 265



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  + ++IV D PG TRD +    +  G+   ++DT GI    
Sbjct: 6   VAIVGRPNVGKSTLFNKLVGRRISIVEDTPGVTRDRIYAPCEWCGHTFLLADTGGIEMKS 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINS 310
           D V   GI+ +    ++ AD+I+ + ++ S
Sbjct: 66  DDVFLSGIREQAKAAIDTADVIIFMTDLRS 95


>gi|59711240|ref|YP_204016.1| GTP-binding protein EngA [Vibrio fischeri ES114]
 gi|197336109|ref|YP_002155390.1| ribosome-associated GTPase EngA [Vibrio fischeri MJ11]
 gi|81311005|sp|Q5E768|DER_VIBF1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238690264|sp|B5FAX6|DER_VIBFM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|59479341|gb|AAW85128.1| predicted GTP-binding protein [Vibrio fischeri ES114]
 gi|197317599|gb|ACH67046.1| ribosome-associated GTPase EngA [Vibrio fischeri MJ11]
          Length = 500

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ EG    + DTAG+R  
Sbjct: 212 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMEREGQEYVLIDTAGVRRR 271

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 272 GRINETVEKFSVIKTLKAVEDANVVLLV--IDARENIS 307



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       LE     + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAKLEEQEFILIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             VE +  +++   +E AD++L +
Sbjct: 65  QGVETKMAEQSLAAIEEADVVLFM 88


>gi|186682120|ref|YP_001865316.1| GTP-binding protein EngA [Nostoc punctiforme PCC 73102]
 gi|238691263|sp|B2J1L2|DER_NOSP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|186464572|gb|ACC80373.1| small GTP-binding protein [Nostoc punctiforme PCC 73102]
          Length = 456

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  K+ I+G  N GKSSL NA   ++ AIV+ I GTTRD +   ++ +G   ++ DTAGI
Sbjct: 175 NEIKVAIVGRPNVGKSSLLNAFVGEERAIVSPISGTTRDAIDTVIERDGQTYRLIDTAGI 234

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R+   I    E   I R F  +  AD++LL+
Sbjct: 235 RKKKHIEYGTEFFSINRAFKAIRRADVVLLV 265



 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 32/61 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LA +  AIV D PG TRD   +     G    + DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYMPAFWNGREFLVVDTGGLVFND 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|307249625|ref|ZP_07531611.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858323|gb|EFM90393.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 506

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 278

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +++A+++LL   I+++K IS
Sbjct: 279 GKVNLAVEKFSVIKTLQAIQDANVVLL--TIDARKGIS 314



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ G+   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGHDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFL 88


>gi|119476373|ref|ZP_01616724.1| predicted GTPase [marine gamma proteobacterium HTCC2143]
 gi|119450237|gb|EAW31472.1| predicted GTPase [marine gamma proteobacterium HTCC2143]
          Length = 466

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  ++  IV D PGTTRD + ID + EG    + DTAG+R
Sbjct: 177 GTKIAIIGRPNVGKSTLVNRLLGEERVIVFDHPGTTRDSIYIDYEREGQPYTLIDTAGVR 236

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305
              ++   VEK  I +    +++A++++L+
Sbjct: 237 RRKNVRETVEKFSIVKALKAIDDANVVVLV 266



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   A+V ++PG TRD    +  +      + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKTRDALVANLPGLTRDRKYGEARVGSRRFIVIDTGGITGEE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++    +++ L V+ AD +  L
Sbjct: 65  EGIDVAMAQQSMLAVDEADAVFFL 88


>gi|251792908|ref|YP_003007634.1| GTP-binding protein EngA [Aggregatibacter aphrophilus NJ8700]
 gi|247534301|gb|ACS97547.1| GTP-binding protein EngA [Aggregatibacter aphrophilus NJ8700]
          Length = 509

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 222 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 281

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +++A+++LL   I++++ IS
Sbjct: 282 GKVHLAVEKFSVIKTLQAIQDANVVLLT--IDARENIS 317



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHLAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIEEADIVLFL 89


>gi|300869581|ref|ZP_07114162.1| GTP-binding protein engA [Oscillatoria sp. PCC 6506]
 gi|300332449|emb|CBN59362.1| GTP-binding protein engA [Oscillatoria sp. PCC 6506]
          Length = 454

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 64/111 (57%), Gaps = 6/111 (5%)

Query: 199 LKNDISSHISQ-GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           L +++ SH+   G+L EI     K+ I+G  N GKSSL NA   +  AIV+ I GTTRD 
Sbjct: 157 LLDELISHLPAVGELPEIEET--KVAIVGRPNVGKSSLLNAFLGETRAIVSPISGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +   ++  G   ++ DTAGIR+  ++    E  GI R F  +  AD++LL+
Sbjct: 215 IDTVVERNGTTYRLIDTAGIRKKKNVEYGPEFFGINRAFKAIRRADVVLLV 265


>gi|153838555|ref|ZP_01991222.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810]
 gi|149748070|gb|EDM58929.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810]
          Length = 498

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R  
Sbjct: 211 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRR 270

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 271 GRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 306



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           + ++G  N GKS+LFN L +   A+V D PG TRD       LD E   + I DT GI  
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVI-DTGGIDG 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           T++ VE +  +++   ++ AD++L L
Sbjct: 64  TEEGVETKMAEQSLAAIDEADVVLFL 89


>gi|282895428|ref|ZP_06303565.1| GTP-binding protein engA [Raphidiopsis brookii D9]
 gi|281199461|gb|EFA74324.1| GTP-binding protein engA [Raphidiopsis brookii D9]
          Length = 453

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSL NA   ++ AIV+ I GTTRD +   ++ EG   ++ DTAGIR+ 
Sbjct: 178 KVAIVGRPNVGKSSLLNAFVGEERAIVSPISGTTRDTIDTLIEREGQAYRLIDTAGIRKK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E   I R F  +  AD++LL+
Sbjct: 238 KHVEYGTEFFSINRAFKAIRRADVVLLV 265



 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 21/35 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + I+G  N GKS+  N LA    AIV D PG TRD
Sbjct: 6   VAIIGRPNVGKSTFVNRLAGDQTAIVHDEPGVTRD 40


>gi|28897386|ref|NP_796991.1| GTP-binding protein EngA [Vibrio parahaemolyticus RIMD 2210633]
 gi|308094331|ref|ZP_05888700.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AN-5034]
 gi|308095608|ref|ZP_05907112.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus Peru-466]
 gi|308125630|ref|ZP_05776379.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus K5030]
 gi|308126072|ref|ZP_05907679.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AQ4037]
 gi|31340057|sp|Q87S12|DER_VIBPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|28805598|dbj|BAC58875.1| GTP-binding protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086906|gb|EFO36601.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus Peru-466]
 gi|308092889|gb|EFO42584.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AN-5034]
 gi|308106660|gb|EFO44200.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AQ4037]
 gi|308113011|gb|EFO50551.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus K5030]
          Length = 498

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R  
Sbjct: 211 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRR 270

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 271 GRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 306



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           + ++G  N GKS+LFN L +   A+V D PG TRD       LD E   + I DT GI  
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVI-DTGGIDG 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           T++ VE +  +++   ++ AD++L L
Sbjct: 64  TEEGVETKMAEQSLAAIDEADVVLFL 89


>gi|226939618|ref|YP_002794691.1| GTP-binding protein engA [Laribacter hongkongensis HLHK9]
 gi|226714544|gb|ACO73682.1| GTP-binding protein engA [Laribacter hongkongensis HLHK9]
          Length = 415

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K  I+G  N GKS+L NA+  ++  I  D PGTTRD + ID + EG    I DTAG+R  
Sbjct: 133 KFAIIGRPNVGKSTLVNAILGEERVIAFDHPGTTRDSIYIDFEREGKTYTIIDTAGVRRR 192

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + D+ +EK  + +T   +E+A++ +L+
Sbjct: 193 AKIDESIEKFSVVKTLQAIEDANVCVLV 220


>gi|27262166|gb|AAN87364.1| GTP-binding protein [Heliobacillus mobilis]
          Length = 445

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           KI ++G  N GKSS+ NA+  ++  IV++IPGTTRD +    + EG    + DTAG+R  
Sbjct: 182 KIAVIGKPNVGKSSMVNAILGEERVIVSNIPGTTRDAIDTPFEREGKHYVLIDTAGMRRK 241

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + D+ VE+  + R+   V+ +D++L++
Sbjct: 242 GKIDESVERYSVMRSLRAVDRSDVVLMV 269



 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+LFN L    VAIV D PG TRD L  +         + DT G+
Sbjct: 9   VAVVGRPNVGKSTLFNRLTGGRVAIVEDRPGVTRDRLYRNAKWLNREFTLVDTGGL 64


>gi|332288185|ref|YP_004419037.1| GTP-binding protein EngA [Gallibacterium anatis UMN179]
 gi|330431081|gb|AEC16140.1| GTP-binding protein EngA [Gallibacterium anatis UMN179]
          Length = 507

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 220 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 279

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +++A+++LL   I++++ IS
Sbjct: 280 GKVTLTVEKFSVIKTLQAIQDANVVLLT--IDAREGIS 315



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V + PG TRD       L G    + DT GI  ++
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVANFPGLTRDRKYGQGQLNGTEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +E++  +++ L ++ AD++L L
Sbjct: 65  QGIEEKMAEQSLLAIDEADIVLFL 88


>gi|328472592|gb|EGF43455.1| GTP-binding protein Der [Vibrio parahaemolyticus 10329]
          Length = 498

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R  
Sbjct: 211 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRR 270

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 271 GRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 306



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           + ++G  N GKS+LFN L +   A+V D PG TRD       LD E   + I DT GI  
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVI-DTGGIDG 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           T++ VE +  +++   ++ AD++L L
Sbjct: 64  TEEGVETKMAEQSLAAIDEADVVLFL 89


>gi|254506757|ref|ZP_05118897.1| GTP-binding protein EngA [Vibrio parahaemolyticus 16]
 gi|219550338|gb|EED27323.1| GTP-binding protein EngA [Vibrio parahaemolyticus 16]
          Length = 494

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 97/179 (54%), Gaps = 17/179 (9%)

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHI--RSFIEADLDFS--EEEDVQNFSSKEVLNDILFL 199
           +L +E M  ++++ +G+ +  L  +    F E  LD S  E ED+  F  +E        
Sbjct: 134 QLGVENMY-QIAAAHGRGVTALIELALNPFAEKLLDESKGELEDLTEFEDEEE------- 185

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           K D S   ++ +   +     K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + 
Sbjct: 186 KLDYSEEEAEEEFTRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIY 245

Query: 260 IDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           I ++ +G    + DTAG+R     ++ VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 246 IPMERDGREYVLIDTAGVRRRTRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 302



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFM 88


>gi|170767411|ref|ZP_02901864.1| GTP-binding protein EngA [Escherichia albertii TW07627]
 gi|170123745|gb|EDS92676.1| GTP-binding protein EngA [Escherichia albertii TW07627]
          Length = 499

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 14  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L +
Sbjct: 74  EGVETRMAEQSLLAIEEADVVLFM 97


>gi|282900427|ref|ZP_06308377.1| Small GTP-binding protein domain protein [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194740|gb|EFA69687.1| Small GTP-binding protein domain protein [Cylindrospermopsis
           raciborskii CS-505]
          Length = 453

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSL NA   ++ AIV+ I GTTRD +   ++ EG   ++ DTAGIR+ 
Sbjct: 178 KVAIVGRPNVGKSSLLNAFVGEERAIVSPISGTTRDTIDTLIEREGQAYRLIDTAGIRKK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E   I R F  +  AD++LL+
Sbjct: 238 KHVEYGTEFFSINRAFKAIRRADVVLLV 265



 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 29/61 (47%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N LA    AIV D PG TRD        +     + DT G+   D
Sbjct: 6   VAIIGRPNVGKSTFVNRLAGDQTAIVHDEPGVTRDRTYRPAFWQNREFLVVDTGGLVFND 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|307718980|ref|YP_003874512.1| GTP-binding protein EngA [Spirochaeta thermophila DSM 6192]
 gi|306532705|gb|ADN02239.1| GTP-binding protein EngA [Spirochaeta thermophila DSM 6192]
          Length = 450

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + ILG  N GKS+L N L  ++ A+V+D PGTTRD+L       G   +I DTAGIR   
Sbjct: 194 VAILGKPNTGKSTLLNTLLGEERALVSDAPGTTRDLLEGRFQYRGRWFRIVDTAGIRRRS 253

Query: 281 --DDIVEKEGIKRTFLEVENADLILLL 305
             +D +E   ++R+   +E A ++ LL
Sbjct: 254 RIEDDLEFYSVRRSLKVIEEAHVVFLL 280



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           ++VI+G  N GKS+LFN L  +  AI    PG TRD +    +L G  V + DT GI  E
Sbjct: 19  RVVIVGRPNVGKSTLFNRLIGRRKAITHPRPGVTRDAVEETWELGGGRVLLVDTGGITSE 78

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              I E    +R   EV+ AD++LL+ ++ 
Sbjct: 79  RGGIFEPLVRERALREVDRADVLLLVLDVT 108


>gi|271501567|ref|YP_003334593.1| ribosome-associated GTPase EngA [Dickeya dadantii Ech586]
 gi|270345122|gb|ACZ77887.1| ribosome-associated GTPase EngA [Dickeya dadantii Ech586]
          Length = 498

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 212 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGRDYVLIDTAGVRKR 271

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 272 GKITDTVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 307



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324
           D VE    +++ L +E AD++L L               + + S+++ +F     +D I 
Sbjct: 65  DGVETRMAEQSLLAIEEADIVLFLVDARDGLMPADYAIAQHLRSREKDTFLVANKVDGID 124

Query: 325 IGTK-SDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           I T  +D YS    +  + I++  G G+  L+ K+
Sbjct: 125 IDTGIADFYSLGLGDV-YPIAASHGRGVTSLLEKV 158


>gi|283769536|ref|ZP_06342432.1| ribosome-associated GTPase EngA [Bulleidia extructa W1219]
 gi|283103804|gb|EFC05190.1| ribosome-associated GTPase EngA [Bulleidia extructa W1219]
          Length = 437

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G K+ ++G  N GKSSL NA+  ++ AIV++I GTTRD +      EG    I DTAGIR
Sbjct: 174 GVKMAVIGEPNVGKSSLVNAILNEERAIVSNIQGTTRDAIDTPFTHEGKPYIIVDTAGIR 233

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305
           +   I   +EK  + R    +E  D++L +
Sbjct: 234 KRGKIYESIEKYSVLRAMRAIERCDVVLFV 263



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN L  + ++IV DIPG TRD L    +  G   ++ DT GI+  +
Sbjct: 6   VAIVGRPNVGKSTIFNRLVGERMSIVEDIPGVTRDRLYGSAEWAGNSFRVIDTGGIQLAN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + E   +  + +E AD+IL++
Sbjct: 66  QPFQTEIRAQVDIAMEEADVILMV 89


>gi|332291461|ref|YP_004430070.1| ribosome-associated GTPase EngA [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169547|gb|AEE18802.1| ribosome-associated GTPase EngA [Krokinobacter diaphorus 4H-3-7-5]
          Length = 435

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAMDTKYNRFGFEFNLVDTAGIRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E+AD+ILL+
Sbjct: 237 AKVKEDLEFYSVMRSVRAIEHADVILLV 264



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRLVQRREAIVDAVSGVTRDRHYGKTDWNGREFTVIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           DD+ E E  K+  L ++ AD I+ + ++
Sbjct: 65  DDVFEAEIDKQVELAIDEADAIIFMVDV 92


>gi|315186467|gb|EFU20227.1| ribosome-associated GTPase EngA [Spirochaeta thermophila DSM 6578]
          Length = 450

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + ILG  N GKS+L N L  ++ A+V+D PGTTRD+L       G   +I DTAGIR   
Sbjct: 194 VAILGKPNTGKSTLLNTLLGEERALVSDAPGTTRDLLEGRFQYRGRWFRIVDTAGIRRRS 253

Query: 281 --DDIVEKEGIKRTFLEVENADLILLL 305
             +D +E   ++R+   +E A ++ LL
Sbjct: 254 RIEDDLEFYSVRRSLKVIEEAHVVFLL 280



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           ++VI+G  N GKS+LFN L  +  AI    PG TRD +    +L G  V + DT GI  E
Sbjct: 19  RVVIVGRPNVGKSTLFNRLIGRRKAITHPRPGVTRDAVEETWELGGGRVLLVDTGGITSE 78

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              I E    +R   EV+ AD++LL+ ++ 
Sbjct: 79  RGGIFEPLVRERALREVDRADVLLLVLDVT 108


>gi|163856334|ref|YP_001630632.1| GTP-binding protein EngA [Bordetella petrii DSM 12804]
 gi|229710727|sp|A9IK66|DER_BORPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|163260062|emb|CAP42363.1| putative GTP-binding protein [Bordetella petrii]
          Length = 451

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N L  ++  I  D+PGTTRD + ID + +G    + DTAG+R  
Sbjct: 187 KLAIVGRPNVGKSTLINTLLGEERVIAFDLPGTTRDAIEIDFERDGRKYTLIDTAGLRRR 246

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E ++++LL+  ++++ E+S
Sbjct: 247 GKVFEAVEKFSVIKTLQAIEASNVVLLM--LDAQTEVS 282



 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D  G TRD    +  +      + DT G     
Sbjct: 7   VALVGRPNVGKSTLFNRLTRSRAALVADYSGLTRDRHYGEGRVGDTPFIVIDTGGF---- 62

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K GI     ++T   +  AD+++ L
Sbjct: 63  EPVAKTGILREMARQTRQAIAEADVVVFL 91


>gi|254428914|ref|ZP_05042621.1| GTPase, putative [Alcanivorax sp. DG881]
 gi|196195083|gb|EDX90042.1| GTPase, putative [Alcanivorax sp. DG881]
          Length = 469

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD    D  L GYL  + DT GI E D
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGDGQLGGYLYTVVDTGGIGEND 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D ++     ++   V  AD++L +
Sbjct: 65  DGIDVPMTSQSLQAVGEADVVLFM 88



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 62/113 (54%), Gaps = 8/113 (7%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           H +  K GE   +  ++ +LG  N GKS+L N +  ++  +V D  GTTRD + +  +  
Sbjct: 173 HRTSKKPGE---DSIRVAVLGRPNVGKSTLINRMLGEERVVVFDHAGTTRDSIEVPFERM 229

Query: 266 GYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           G    + DTAG+R      ++VEK  + +    +E A +++++  I++++ I+
Sbjct: 230 GRAYTLIDTAGVRRRGKVFEMVEKFSVIKALQAMEAAQVVVVV--IDAREGIT 280


>gi|17227979|ref|NP_484527.1| GTP-binding protein EngA [Nostoc sp. PCC 7120]
 gi|26006724|sp|Q8YZH7|DER_NOSS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|17129828|dbj|BAB72441.1| GTP binding protein [Nostoc sp. PCC 7120]
          Length = 453

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  KI I+G  N GKSSL NA A ++  IV+ I GTTRD +   ++ +G   ++ DTAGI
Sbjct: 175 NEIKIAIIGRPNVGKSSLLNAFAGEERVIVSPISGTTRDAIDTFIERDGQNYRLIDTAGI 234

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R+   I    E   I R F  +  AD++LL+
Sbjct: 235 RKKKSIDYGTEFFSINRAFKAIRRADVVLLV 265



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LA +  AIV D PG TRD   +         ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYLPAYWSDREFQVVDTGGLVFND 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|262274783|ref|ZP_06052594.1| GTP-binding protein EngA [Grimontia hollisae CIP 101886]
 gi|262221346|gb|EEY72660.1| GTP-binding protein EngA [Grimontia hollisae CIP 101886]
          Length = 501

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 31/182 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K  I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R  
Sbjct: 212 KFSIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRR 271

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFI---- 325
              +D VEK  + +T   +E+A+++LL+  I++++ IS        F  N     +    
Sbjct: 272 KRVNDKVEKFSVVQTLKAIEDANVVLLV--IDARENISDQDLSLLGFALNAGRSIVIAVN 329

Query: 326 ---GTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              G  SD+      E D           H IS+  G G+  L   I+    +  +++  
Sbjct: 330 KWDGLDSDVKERVKSELDRRLGFVDFARIHFISALHGTGVGHLFESIQEAYESATRRIST 389

Query: 372 SI 373
           S+
Sbjct: 390 SM 391



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGKALLGEHEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   +E AD++L +
Sbjct: 65  EGVETKMAEQSLAAIEEADVVLFM 88


>gi|224531730|ref|ZP_03672362.1| ribosome-associated GTPase EngA [Borrelia valaisiana VS116]
 gi|224511195|gb|EEF81601.1| ribosome-associated GTPase EngA [Borrelia valaisiana VS116]
          Length = 433

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N+GKS+L N L+  +++IV+D PGTTRD +       G + +I DTAGIR  
Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKTKFTSNGKVFEIIDTAGIRRR 234

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++IVE   + R    ++  D++ LL  I+ K+E++
Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLL--IDVKEELT 270



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     +  +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFSFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D + K  +++    +E  +LILL+ ++N
Sbjct: 66  RDEISKIVVQKVLSSLEKVNLILLVLDVN 94


>gi|91217172|ref|ZP_01254134.1| GTP-binding protein EngA [Psychroflexus torquis ATCC 700755]
 gi|91184772|gb|EAS71153.1| GTP-binding protein EngA [Psychroflexus torquis ATCC 700755]
          Length = 442

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  NAGKSS  NAL  +D  IVTDIPGTTRD +       G+  K+ DTAGIR    +
Sbjct: 187 VVGRPNAGKSSFINALIGEDRYIVTDIPGTTRDSIDTRYTRFGFDFKLVDTAGIRRKAKV 246

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
              +E   + R+   +EN+D+ L++
Sbjct: 247 KEDLEFYSVMRSVRAIENSDVCLIV 271



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + ++G  N GKS+LFN + K+  AIV    G TRD      D  G    + DT G +  +
Sbjct: 13  VAVVGRPNVGKSTLFNRMIKRREAIVDSASGVTRDRHYGKSDWNGREFTLIDTGGYVIGS 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           DD+ EKE  K+  L ++ AD+I+ + ++
Sbjct: 73  DDVFEKEIDKQVELAIDEADVIIFVVDV 100


>gi|90410877|ref|ZP_01218891.1| GTP-binding protein EngA [Photobacterium profundum 3TCK]
 gi|90328090|gb|EAS44401.1| GTP-binding protein EngA [Photobacterium profundum 3TCK]
          Length = 493

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 5/119 (4%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           K D++   ++     +     K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + 
Sbjct: 185 KADLTEEDAEAAYKRLQEQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIY 244

Query: 260 IDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           I ++ +G    + DTAG+R   ++   VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 245 IPMERDGQEYVLIDTAGVRRRKNMNQAVEKFSVIQTLKAVEDANVVLLI--IDARENIS 301



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      +LE +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   +E AD++L L
Sbjct: 65  EGVETKMAEQSLAAIEEADVVLFL 88


>gi|82703488|ref|YP_413054.1| GTP-binding protein EngA [Nitrosospira multiformis ATCC 25196]
 gi|123768150|sp|Q2Y6F9|DER_NITMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|82411553|gb|ABB75662.1| Small GTP-binding protein domain [Nitrosospira multiformis ATCC
           25196]
          Length = 466

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           KI I+G  N GKS+L N L  ++  I  D PGTTRD + ID +  G    + DTAG+R  
Sbjct: 177 KIAIVGRPNVGKSTLVNTLLGEERVIAFDQPGTTRDSIYIDFERNGRTYTLIDTAGLRRR 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  + VEK  + +T   +E+A++++L+  +++  EIS
Sbjct: 237 GKVQETVEKFSVVKTLQAIEDANVVILV--LDAASEIS 272



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-- 279
           +V++G SN GKS+LFN L +   A+V D+PG TRD       L      + DT G     
Sbjct: 5   LVLVGRSNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGHGKLGDRPYLVVDTGGFEPMA 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           T+ I+  E  K+T   ++ AD++L +
Sbjct: 65  TEGILH-EMAKQTLQAIDEADVVLFI 89


>gi|315924473|ref|ZP_07920695.1| ribosome-associated GTPase EngA [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622352|gb|EFV02311.1| ribosome-associated GTPase EngA [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 440

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 29/177 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  NAGKS+L N L  ++  IV+DIPGTTRD +   ++  G      DTAG+R   
Sbjct: 179 IAVVGKPNAGKSTLVNQLIGENRMIVSDIPGTTRDAIDSKIERGGVEYTFIDTAGLRRKS 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLL-------KEINSK-KEISFPKNIDFIFIGTKSD 330
            I   VE+  I R    V+ AD++L++        E +SK   I+  + I  I +  K D
Sbjct: 239 KIADEVERYSIIRAIAAVDRADVVLMMVNAQTGVTEQDSKIAGIAHNRFIPTIIVVNKWD 298

Query: 331 LYSTYTEEYDHL------------------ISSFTGEGLEELINKIKSILSNKFKKL 369
           L    T+    +                  IS+ TG+  E++ +KI+ +++   K++
Sbjct: 299 LIEKDTKTMQKMTGDIRNSLAFMPYAPMLFISAKTGKRAEKIYDKIQYVVTQSRKRV 355



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + +AIV + PG TRD +  D + + +   + DT GI  +T
Sbjct: 5   VAVVGKPNVGKSTLFNKLVGERIAIVENTPGVTRDRIIADAEWQNHRFTLIDTGGIELKT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            + +  +   +  + +E ADLILLL
Sbjct: 65  GNTIMHQMRVQAEIAIETADLILLL 89


>gi|110834717|ref|YP_693576.1| GTP-binding protein [Alcanivorax borkumensis SK2]
 gi|123149362|sp|Q0VNE4|DER_ALCBS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|110647828|emb|CAL17304.1| GTP-binding protein, putative [Alcanivorax borkumensis SK2]
          Length = 471

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD    D  L GYL  + DT GI E D
Sbjct: 7   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGDGQLGGYLYTVVDTGGIGEND 66

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D ++     ++   V  AD++L +
Sbjct: 67  DGIDVPMTSQSLQAVGEADVVLFM 90



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 62/113 (54%), Gaps = 8/113 (7%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           H +  K GE   +  ++ +LG  N GKS+L N +  ++  +V D  GTTRD + +  +  
Sbjct: 175 HRTSKKPGE---DSIRVAVLGRPNVGKSTLINRMLGEERVVVFDHAGTTRDSIEVPFERM 231

Query: 266 GYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           G    + DTAG+R      ++VEK  + +    +E A +++++  I++++ I+
Sbjct: 232 GRAYTLIDTAGVRRRGKVFEMVEKFSVIKALQAMEAAQVVVVV--IDAREGIT 282


>gi|315634680|ref|ZP_07889964.1| ribosome-associated GTPase EngA [Aggregatibacter segnis ATCC 33393]
 gi|315476628|gb|EFU67376.1| ribosome-associated GTPase EngA [Aggregatibacter segnis ATCC 33393]
          Length = 512

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 225 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQNYTLIDTAGVRKR 284

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +++A+++LL   I++++ IS
Sbjct: 285 GKVHLAVEKFSVIKTLQAIQDANVVLLT--IDARENIS 320



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAHLAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIEEADIVLFL 89


>gi|323452265|gb|EGB08139.1| hypothetical protein AURANDRAFT_64089 [Aureococcus anophagefferens]
          Length = 552

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 9/85 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           ++ ++G  N GKS+L NALA+ +VA+    PG TRD +   +D+ G  V++ DTAG+R  
Sbjct: 231 RVALVGRPNVGKSTLVNALARSNVAVAAPEPGVTRDAVECAVDVAGRAVRLVDTAGVRRV 290

Query: 280 --------TDDIVEKEGIKRTFLEV 296
                   + D VE+   + T LEV
Sbjct: 291 LEGTTSRASKDAVEERAARSTELEV 315


>gi|223985795|ref|ZP_03635838.1| hypothetical protein HOLDEFILI_03144 [Holdemania filiformis DSM
           12042]
 gi|223962243|gb|EEF66712.1| hypothetical protein HOLDEFILI_03144 [Holdemania filiformis DSM
           12042]
          Length = 434

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +  I+G  N GKSSL NAL K++  IV+DI GTTRD +    + +G    + DTAGIR
Sbjct: 173 GIRFAIIGRPNVGKSSLVNALLKEERVIVSDIEGTTRDAVDTPFEHDGKQYVVVDTAGIR 232

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305
           +   +   +EK  + R    +E  D++L +
Sbjct: 233 KRGKVYENIEKYSVLRAMSAIERCDVVLFV 262



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +           ++ DT GI+  +
Sbjct: 6   VAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGKGTWLTQDFRLIDTGGIQLEN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              ++E   +  + +E AD+IL +
Sbjct: 66  QPFQEEIKAQVEIAIEEADVILFV 89


>gi|159028658|emb|CAO88129.1| engA [Microcystis aeruginosa PCC 7806]
          Length = 452

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSL NAL  +  AIV+ I GTTRD +   ++ EG + ++ DTAGIR  
Sbjct: 178 KVAIIGRPNVGKSSLLNALTGQQRAIVSPISGTTRDSIDTLIEREGQVYRLIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEI 308
            ++    E   I R F  +  +D++L + ++
Sbjct: 238 KNVDYGAEFFSINRAFKAIRRSDVVLFVIDV 268



 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 10/66 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKS+L N +A    AIV D PG TRD         D D +     I DT G
Sbjct: 6   VAIIGRPNVGKSTLVNRIAGDQQAIVFDQPGITRDRTYQPAFWCDRDFQ-----IVDTGG 60

Query: 277 IRETDD 282
           +   DD
Sbjct: 61  LVFNDD 66


>gi|296113385|ref|YP_003627323.1| GTP-binding protein EngA [Moraxella catarrhalis RH4]
 gi|295921079|gb|ADG61430.1| GTP-binding protein EngA [Moraxella catarrhalis RH4]
 gi|326559230|gb|EGE09661.1| GTP-binding protein EngA [Moraxella catarrhalis 46P47B1]
 gi|326559869|gb|EGE10269.1| GTP-binding protein EngA [Moraxella catarrhalis 7169]
 gi|326569645|gb|EGE19697.1| GTP-binding protein EngA [Moraxella catarrhalis BC1]
 gi|326570126|gb|EGE20171.1| GTP-binding protein EngA [Moraxella catarrhalis BC8]
 gi|326570864|gb|EGE20888.1| GTP-binding protein EngA [Moraxella catarrhalis BC7]
 gi|326574414|gb|EGE24356.1| GTP-binding protein EngA [Moraxella catarrhalis 101P30B1]
 gi|326576405|gb|EGE26314.1| GTP-binding protein EngA [Moraxella catarrhalis O35E]
          Length = 472

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 61/97 (62%), Gaps = 5/97 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N L  +D  +V D+PGTTRD + I  + EG    + DTAG+R  
Sbjct: 181 KLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIYIPFEREGRSYVLIDTAGVRRR 240

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
              D+ VEK  + +T   +++A++++L+  I++K+ I
Sbjct: 241 GRIDEKVEKFSVVKTLQAIKDANVVVLV--IDAKEGI 275



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L K   A+V D+ G TRD    D   E     + DT GI E D
Sbjct: 7   VALIGRPNVGKSTLFNQLTKSRQALVADLAGLTRDRQYGDAHFENKSFIVVDTGGIGEMD 66

Query: 282 D---IVEKEGIKRTFLEVENADLILLL 305
           D    ++     +++  +  AD+++ +
Sbjct: 67  DGSGNIDDYMATQSYTAIHEADIVVFV 93


>gi|302389542|ref|YP_003825363.1| ribosome-associated GTPase EngA [Thermosediminibacter oceani DSM
           16646]
 gi|302200170|gb|ADL07740.1| ribosome-associated GTPase EngA [Thermosediminibacter oceani DSM
           16646]
          Length = 436

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 9/100 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKSSL NA+  ++  IV+DIPGTTRD +    + EG  + + DTAG+R  
Sbjct: 177 KVAVVGKPNVGKSSLVNAILGEERVIVSDIPGTTRDAIDTPFEYEGQKMVLIDTAGMRRK 236

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315
             +  KE I+     R    VE AD++L++  +++ +EIS
Sbjct: 237 SRV--KEDIEFYSNIRALGAVERADIVLVV--LDATQEIS 272



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-R 278
           + + I+G  N GKS+LFN +  K ++IV D PG TRD +   ++  G    + DT GI  
Sbjct: 3   FTVAIVGRPNVGKSTLFNRIIGKRISIVDDKPGVTRDRIYGQVEWRGKKFTLVDTGGIDP 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           E  D++     ++    ++++DLIL L
Sbjct: 63  EGSDVMTSHIRRQVEFAIDSSDLILFL 89


>gi|269926863|ref|YP_003323486.1| small GTP-binding protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790523|gb|ACZ42664.1| small GTP-binding protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 448

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKS L NA+  ++ AIV+D+PGTTRD +  ++      + + DTAGIR  
Sbjct: 187 RIAIVGRPNVGKSRLLNAILGQERAIVSDVPGTTRDPVDTEIQWGDQRIVLIDTAGIRRR 246

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E+  + RT   +  +D++LLL
Sbjct: 247 GKVESGIEQYSVFRTLRAIGRSDVVLLL 274



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+ FN L  +  AIV D PGTTRD L  ++   G    I DT G+  + 
Sbjct: 7   VAIVGRPNVGKSTFFNRLLGERAAIVQDEPGTTRDRLYGEVSWRGRTFTIVDTGGLETSV 66

Query: 282 DIV--EKEGIKRTFLE-----VENADLILLLKEINS 310
           D    E + I+R   E     +  ADLI+ + ++ +
Sbjct: 67  DSSSDEPDPIRRMVREQAEQAIREADLIVFMIDVKT 102


>gi|89072706|ref|ZP_01159271.1| GTP-binding protein EngA [Photobacterium sp. SKA34]
 gi|89051526|gb|EAR56980.1| GTP-binding protein EngA [Photobacterium sp. SKA34]
          Length = 500

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAGIR  
Sbjct: 213 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRR 272

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            ++   VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 273 KNMHQAVEKFSVIQTLKAVEDANVVLLI--IDARENIS 308



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      +LE +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   +E AD++L L
Sbjct: 65  EGVETKMAEQSLAAIEEADVVLFL 88


>gi|166362822|ref|YP_001655095.1| GTP-binding protein EngA [Microcystis aeruginosa NIES-843]
 gi|189037151|sp|B0JFL6|DER_MICAN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166085195|dbj|BAF99902.1| GTP binding protein [Microcystis aeruginosa NIES-843]
          Length = 452

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSL NAL  +  AIV+ I GTTRD +   ++ EG + ++ DTAGIR  
Sbjct: 178 KVAIIGRPNVGKSSLLNALTGQQRAIVSPISGTTRDSIDTLIEREGQVYRLIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEI 308
            ++    E   I R F  +  +D++L + ++
Sbjct: 238 KNVDYGAEFFSINRAFKAIRRSDVVLFVIDV 268



 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 10/66 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKS+L N +A    AIV D PG TRD         D D +     I DT G
Sbjct: 6   VAIIGRPNVGKSTLVNRIAGDQQAIVFDQPGITRDRTYQPAFWCDRDFQ-----IVDTGG 60

Query: 277 IRETDD 282
           +   DD
Sbjct: 61  LVFNDD 66


>gi|291618407|ref|YP_003521149.1| EngA [Pantoea ananatis LMG 20103]
 gi|291153437|gb|ADD78021.1| EngA [Pantoea ananatis LMG 20103]
 gi|327394799|dbj|BAK12221.1| GTP-binding protein EngA [Pantoea ananatis AJ13355]
          Length = 494

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 207 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 266

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I+++  IS
Sbjct: 267 GKITDTVEKFSVIKTLQAIEDANVVMLV--IDARAGIS 302



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|295132650|ref|YP_003583326.1| GTP-binding protein EngA [Zunongwangia profunda SM-A87]
 gi|294980665|gb|ADF51130.1| GTP-binding protein EngA [Zunongwangia profunda SM-A87]
          Length = 434

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTKYNRFGFEFNLVDTAGIRRK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +ENAD+ LL+
Sbjct: 236 SKVKEDLEFYSVMRSVRAIENADVCLLV 263



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRLIQRREAIVDSVSGVTRDRHYGKSDWNGRNFSLIDTGGYVIGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD+ E E  K+  L +  AD I+ + ++ S
Sbjct: 65  DDVFEAEIDKQVELAIGEADAIIFMVDVES 94


>gi|325915367|ref|ZP_08177684.1| small GTP-binding protein domain/GTP-binding hypothetical protein
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538414|gb|EGD10093.1| small GTP-binding protein domain/GTP-binding hypothetical protein
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 465

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 83/162 (51%), Gaps = 17/162 (10%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209
           W+ KL      +   +D ++EE V++  ++   +D++ L             ++ + + +
Sbjct: 106 WLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLEEVGARLPE 165

Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              GE++ N     +I  +G  N GKS+L N L  ++  I +++PGTTRD + +DL+ + 
Sbjct: 166 EGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDN 225

Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
              ++ DTAG+R   + ++ VEK    +T   +E   + +L+
Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267



 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + ++G  N GKS++FNAL +   A+V D PG TRD
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39


>gi|257125220|ref|YP_003163334.1| GTP-binding protein EngA [Leptotrichia buccalis C-1013-b]
 gi|257049159|gb|ACV38343.1| small GTP-binding protein [Leptotrichia buccalis C-1013-b]
          Length = 441

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 3/93 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I +G  I ILG  NAGKSSL N L  ++ +IV+DI GTTRD +   L   G    + DTA
Sbjct: 172 IEDGLNIAILGRPNAGKSSLVNKLLNEERSIVSDIAGTTRDSIDSSLRYNGETYTLIDTA 231

Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           GIR   + +D +E   I R    ++ AD+ +L+
Sbjct: 232 GIRRKSKVEDDIEYYSILRAMKAIKRADVCVLM 264



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           + + I+G  N GKS+LFN L    ++IV D PG TRD L  +++  G    + DT G+  
Sbjct: 3   HTVAIVGRPNVGKSTLFNKLVGDRLSIVKDEPGVTRDRLYREIEWSGKEFILVDTGGLEP 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
            T+D +  +  ++  + ++ AD+I+ L
Sbjct: 63  RTEDFMMGKIKQQAQVAIDEADVIIFL 89


>gi|296126458|ref|YP_003633710.1| ribosome-associated GTPase EngA [Brachyspira murdochii DSM 12563]
 gi|296018274|gb|ADG71511.1| ribosome-associated GTPase EngA [Brachyspira murdochii DSM 12563]
          Length = 484

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 3/90 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKS+L N L  KD +IV+DI GTTRD +    + +G  + + DTAGIR+  
Sbjct: 223 IAIVGKPNAGKSTLLNTLIGKDRSIVSDIAGTTRDAIDETFNFKGDDICLVDTAGIRKKK 282

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEI 308
           ++   VE   + R    +E++D+ +L+ ++
Sbjct: 283 NVNTDVEYYSVNRAIKAIESSDVCILMLDV 312



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 12/142 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKS+LFN  A +  +IV    G TRD+      ++     + DT G+ +  
Sbjct: 4   IAILGRPNVGKSTLFNRFAGRRKSIVDPTAGVTRDISMSLAYIDDIAFNVFDTGGLLDIS 63

Query: 282 DIVEKEGIKRTFLEV--ENADLILLLKEINSKKEISFPKNIDFIFIGTKSD------LYS 333
           D    E ++   L+   E+AD++L L + +     S P +  FI I  KS       +  
Sbjct: 64  DDTLNEKVREKALKTAAEDADILLFLVDAHQ----SHPDDRHFINIIRKSGKPIILVINK 119

Query: 334 TYTEEYDHLISSFTGEGLEELI 355
              + +++LI+ F   G+ +++
Sbjct: 120 VDADSHNNLINEFYSLGINDVV 141


>gi|302878616|ref|YP_003847180.1| ribosome-associated GTPase EngA [Gallionella capsiferriformans
           ES-2]
 gi|302581405|gb|ADL55416.1| ribosome-associated GTPase EngA [Gallionella capsiferriformans
           ES-2]
          Length = 470

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L NA+  +   I  D PGTTRD + ID + +G    I DTAG+R  
Sbjct: 180 KLAIVGRPNVGKSTLVNAILGEQRVIAFDQPGTTRDSIYIDFERDGKQYTIIDTAGVRRR 239

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            + ++ +EK  + +T   +E+A++++L+  ++++ +I+
Sbjct: 240 GKVEEAIEKFSVIKTMQAIEDANVVVLV--VDARDQIT 275



 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +V++G  N GKS+LFN L +   A+V D PG TRD       +      + DT G+    
Sbjct: 5   LVLVGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRHYGRGRVGERPYLVVDTGGL---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V K+GI     +++   V+ AD++L L
Sbjct: 61  EPVAKDGIMFEMARQSRQAVDEADVVLFL 89


>gi|71279565|ref|YP_270897.1| GTP-binding protein EngA [Colwellia psychrerythraea 34H]
 gi|123733686|sp|Q47WC5|DER_COLP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|71145305|gb|AAZ25778.1| GTP-binding protein EngA [Colwellia psychrerythraea 34H]
          Length = 498

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++  G    + DTAGIR  
Sbjct: 214 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSVYIPMERNGREYTLIDTAGIRRR 273

Query: 280 --TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D+VEK  + +T   +E+A++ LL+  I++++ IS
Sbjct: 274 KNVTDVVEKYSVIKTLRAIEDANVCLLI--IDAQEGIS 309



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 18/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++E +   + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADYPGLTRDRQYGQAEVEEHPFIVIDTGGINGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----------------NSKKEISFPKNIDFIF 324
             ++ +  +++ + +E AD +L L +                   +KK       ID I 
Sbjct: 65  QGIDVKMAEQSLMAIEEADAVLFLVDARDGLTAADHGIADHLRKQNKKIFVVANKIDGIH 124

Query: 325 IGTK-SDLYSTYTEEYDHLISSFTGEGLEELIN 356
             +  ++ YS    E+ H I++  G G+ +L+ 
Sbjct: 125 GDSAVAEFYSLGLGEHVHQIAAAHGRGVTQLLT 157


>gi|188997363|ref|YP_001931614.1| small GTP-binding protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|229807528|sp|B2V5W6|DER_SULSY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|188932430|gb|ACD67060.1| small GTP-binding protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 445

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 59/97 (60%), Gaps = 3/97 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+  K+ I+G  NAGKSSL NAL  ++  +V++IPGTTRD + I  + +G      DTAG
Sbjct: 179 RDYIKVAIVGKPNAGKSSLINALLNEERVLVSEIPGTTRDTVDILYEKDGQKFLFLDTAG 238

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINS 310
           +R+   +   +E   + RT   +E AD+++L+ + N 
Sbjct: 239 MRKKSKVDFGLEFFSVGRTIEAIEKADVVVLVIDANQ 275



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +++ I+G  N GKSSLFN +  +  AIV DIPG TRD +    +  G   ++ DT G
Sbjct: 2   FRVAIVGIPNVGKSSLFNRIIGQRKAIVEDIPGVTRDRIVSTAEWRGVKFEVVDTGG 58


>gi|303252646|ref|ZP_07338809.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307247405|ref|ZP_07529452.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302648614|gb|EFL78807.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306856102|gb|EFM88258.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 506

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 278

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 279 GKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVV 335

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + +K   +   +K  
Sbjct: 336 NKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTS 395

Query: 371 FSI 373
            S+
Sbjct: 396 TSV 398



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFL 88


>gi|260881015|ref|ZP_05403389.2| ribosome-associated GTPase EngA [Mitsuokella multacida DSM 20544]
 gi|260850181|gb|EEX70188.1| ribosome-associated GTPase EngA [Mitsuokella multacida DSM 20544]
          Length = 445

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 54/87 (62%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           I ++G  N GKSS+ NA+  ++  IV+D+PGTTRD +      +G    + DTAG+R   
Sbjct: 181 IAVIGRPNVGKSSIVNAILGEERVIVSDVPGTTRDAIDTHFTKDGTKFTLIDTAGMRRRG 240

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           + D+ VE+  + R+   ++ AD++L++
Sbjct: 241 KIDEPVERYSVMRSLRAIDRADVVLMM 267



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS+LFN + KK V+IV D+PG TRD + +D +       + DT GI   E
Sbjct: 8   VAIVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYLDAEWLNQHFTMIDTGGIEFDE 67

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           ++ I+ K   ++  L ++ AD+IL L
Sbjct: 68  SNHIL-KSMRQQAQLAMDEADVILFL 92


>gi|308187766|ref|YP_003931897.1| GTP-binding protein engA [Pantoea vagans C9-1]
 gi|308058276|gb|ADO10448.1| GTP-binding protein engA [Pantoea vagans C9-1]
          Length = 496

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 268

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305
               D VEK  + +T   +E+A++++L+
Sbjct: 269 AKISDTVEKFSVIKTLQAIEDANVVMLV 296



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L +
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFM 88


>gi|51598763|ref|YP_072951.1| GTP-binding protein EngA [Borrelia garinii PBi]
 gi|81825627|sp|Q661B2|DER_BORGA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|51573334|gb|AAU07359.1| GTP-binding protein [Borrelia garinii PBi]
          Length = 433

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 3/91 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N+GKS+L N L+  +++IV+D PGTTRD +   L   G + +I DTAGIR  
Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKTKLTRNGKVFEIIDTAGIRRR 234

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI 308
              +++VE   + R    ++  D++ LL ++
Sbjct: 235 ARVNEVVEYYSVNRALKVIDIVDIVFLLIDV 265



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     +  +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDAKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D + K  +++    +E  DLILL+ ++N
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDVN 94


>gi|224534791|ref|ZP_03675363.1| ribosome-associated GTPase EngA [Borrelia spielmanii A14S]
 gi|224514039|gb|EEF84361.1| ribosome-associated GTPase EngA [Borrelia spielmanii A14S]
          Length = 433

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N+GKS+L N L+  +++I++D PGTTRD +   +   G + +I DTAGIR  
Sbjct: 175 KVGIIGKPNSGKSTLINHLSGNEISIISDQPGTTRDFIKTKVTRNGKVFEIIDTAGIRRR 234

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++IVE   + R    ++  D++ LL  I+ K+E++
Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLL--IDVKEELT 270



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN L     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRLLDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D + K  +++    +E  DLILL+ ++N
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDVN 94


>gi|121535817|ref|ZP_01667617.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1]
 gi|121305589|gb|EAX46531.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1]
          Length = 440

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+  +G  N GKSSL NAL  ++  IV+DIPGTTRD +    + +G    + DTAG+R  
Sbjct: 178 KVAFIGRPNVGKSSLVNALLGEERVIVSDIPGTTRDAIDTYFEKDGTKFILIDTAGMRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VE+  + R+   VE AD++L++
Sbjct: 238 ARINQPVERYSVIRSLRAVERADVVLVV 265



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +AKK V+IV D+PG TRD + +D +  G    + DT GI  ET
Sbjct: 6   VAIVGRPNVGKSTLFNFIAKKRVSIVEDLPGVTRDRIYMDAEWLGREFTMIDTGGIEIET 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D +      +  L +E AD+I+ +
Sbjct: 66  TDRILAATRHQAQLAIEEADVIIFV 90


>gi|315637972|ref|ZP_07893157.1| ribosome-associated GTPase EngA [Campylobacter upsaliensis JV21]
 gi|315481820|gb|EFU72439.1| ribosome-associated GTPase EngA [Campylobacter upsaliensis JV21]
          Length = 459

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 20/158 (12%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213
           L  LY  W++K  H       + + S EE ++NF  ++                 Q K  
Sbjct: 149 LDELYA-WLEKFLHTSILKNDEEEQSLEEFLENFDEEK-----------------QIKFK 190

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI  N  KI I+G  N GKSSL NAL K+  ++V+ I GTT D +   +  +  L++  D
Sbjct: 191 EIDENHIKIGIVGRVNVGKSSLLNALVKEQRSVVSSIAGTTIDPVNESVMYKDKLLEFID 250

Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEIN 309
           TAGIR+   I  +E+  + RT   +EN+ + LL+ + N
Sbjct: 251 TAGIRKRGKIQGLERFALNRTEKMLENSQIALLVLDAN 288



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI ++I GTTRD   I +++ G    + D+ G+ E++
Sbjct: 4   IILIGKPNVGKSSLFNRIARQRIAITSEISGTTRDTNKIKVNINGKEALLIDSGGLDESN 63

Query: 282 DIVEKEGIKRTFLE-VENADLILLL 305
           ++   + +K+  L   +NAD+IL L
Sbjct: 64  ELF--KNVKQNSLNAAKNADIILYL 86


>gi|154483558|ref|ZP_02026006.1| hypothetical protein EUBVEN_01262 [Eubacterium ventriosum ATCC
           27560]
 gi|149735468|gb|EDM51354.1| hypothetical protein EUBVEN_01262 [Eubacterium ventriosum ATCC
           27560]
          Length = 441

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA K ++IV D PG TRD +  D+D   +   + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGKKISIVKDTPGVTRDRIHADIDWLDHKFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           +DI+  +  ++  + ++ AD+I+ + ++
Sbjct: 66  NDIILSQMREQAQIAIDTADVIIFMTDV 93



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKSS+ N +  +   IV++I GTTRD +  D+   G      DTAG+R  
Sbjct: 179 RIAIVGKPNVGKSSIINKITGESRVIVSNIAGTTRDAIDTDVKWNGKDYVFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  I RT   VE AD+++++
Sbjct: 239 SKVKEEIEKYSIIRTVTAVERADVVIIV 266


>gi|90579361|ref|ZP_01235171.1| GTP-binding protein EngA [Vibrio angustum S14]
 gi|90440194|gb|EAS65375.1| GTP-binding protein EngA [Vibrio angustum S14]
          Length = 500

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAGIR  
Sbjct: 213 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRR 272

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            ++   VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 273 KNMHQAVEKFSVIQTLKAVEDANVVLLV--IDARENIS 308



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      +LE +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   +E AD++L L
Sbjct: 65  EGVETKMAEQSLAAIEEADVVLFL 88


>gi|298492105|ref|YP_003722282.1| ribosome-associated GTPase EngA ['Nostoc azollae' 0708]
 gi|298234023|gb|ADI65159.1| ribosome-associated GTPase EngA ['Nostoc azollae' 0708]
          Length = 454

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  K+ I+G  N GKSSL NA   ++ AIV+ I GTTRD +  ++   G   ++ DTAGI
Sbjct: 175 NVIKVAIIGRPNVGKSSLLNAFVGEERAIVSPISGTTRDTIDTEIVRNGQTYRLIDTAGI 234

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R+   I    E   I R F  +  AD++LL+
Sbjct: 235 RKKKHIEYGTEFFSINRAFKAIRRADVVLLV 265



 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + I+G  N GKS+L N LA    AIV D PG TRD
Sbjct: 6   VAIIGRPNVGKSTLVNRLAGDQTAIVHDEPGVTRD 40


>gi|330446667|ref|ZP_08310319.1| small GTP-binding domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490858|dbj|GAA04816.1| small GTP-binding domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 500

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAGIR  
Sbjct: 213 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRR 272

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            ++   VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 273 KNMHQAVEKFSVIQTLKAVEDANVVLLV--IDARENIS 308



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      +LE +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   +E AD++L L
Sbjct: 65  EGVETKMAEQSLAAIEEADVVLFL 88


>gi|168334058|ref|ZP_02692274.1| small GTP-binding protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 455

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 3/95 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  K+ I+G  N GKSSL N +  +D  IV+DI GTTR+ +  ++ ++G    + DTAG+
Sbjct: 189 DAIKVAIVGKPNVGKSSLVNKILGEDRVIVSDIAGTTRESVDTEVVIDGQKYVLIDTAGV 248

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEIN 309
           R+   +   +EK  + RT   +E AD++L+L + N
Sbjct: 249 RKRKKVKEDIEKYSVIRTISAIERADIVLILIDAN 283



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 1/96 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N   + ++G  N GKS+LFN LAK  ++I+ D PG TRD +  D +       + DT 
Sbjct: 13  VMNKPVVAVVGRPNVGKSTLFNRLAKAKISIIDDTPGVTRDRIYADAEWLNKKFTLVDTG 72

Query: 276 GIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           GI  +++D++  +  K+  + ++ AD+I+ L ++ +
Sbjct: 73  GIEPDSNDVILSQMRKQAEVAIDTADVIIFLVDVKT 108


>gi|85712733|ref|ZP_01043778.1| GTP-binding protein EngA [Idiomarina baltica OS145]
 gi|85693465|gb|EAQ31418.1| GTP-binding protein EngA [Idiomarina baltica OS145]
          Length = 479

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 193 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSVYIPMERDGREYVLIDTAGVRRR 252

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              D+ +EK  + +T   +E+A+++L +  I++++ IS
Sbjct: 253 GRIDEAIEKYSVVKTLQAIEDANVVLAV--IDARETIS 288



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      + +GY   + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYQFIVVDTGGIHGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +++   K++   +E AD++L L
Sbjct: 65  EGIDEVMAKQSLQAIEEADVVLFL 88


>gi|326791376|ref|YP_004309197.1| ribosome-associated GTPase EngA [Clostridium lentocellum DSM 5427]
 gi|326542140|gb|ADZ83999.1| ribosome-associated GTPase EngA [Clostridium lentocellum DSM 5427]
          Length = 441

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N +  ++  IV++I GTTRD +  ++ +EG    + DTAGIR  
Sbjct: 179 RVAIIGKPNVGKSSLVNKIVGEERVIVSNIAGTTRDSVDTEVTIEGQEYVLIDTAGIRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +EK  I RT   ++ AD++L+L
Sbjct: 239 SKIKENIEKYSIIRTIAAIDRADVVLIL 266



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L K   +IV D PG TRD +  +++   +   I DT GI  ++
Sbjct: 6   VAVIGRPNVGKSTLFNRLTKSKTSIVDDTPGVTRDRIYGEVEWLNHKFTIIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
            DI+  +  ++    +E+AD+I+ L ++ +
Sbjct: 66  TDIILSQMRRQAEAAIESADVIIFLVDVKT 95


>gi|304398581|ref|ZP_07380453.1| ribosome-associated GTPase EngA [Pantoea sp. aB]
 gi|304353792|gb|EFM18167.1| ribosome-associated GTPase EngA [Pantoea sp. aB]
          Length = 496

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 268

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305
               D VEK  + +T   +E+A++++L+
Sbjct: 269 AKISDTVEKFSVIKTLQAIEDANVVMLV 296



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L +
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFM 88


>gi|227872320|ref|ZP_03990675.1| GTPase [Oribacterium sinus F0268]
 gi|227841827|gb|EEJ52102.1| GTPase [Oribacterium sinus F0268]
          Length = 440

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+LFN +A K ++IV D PG TRD +  + +   Y   + DT GI   +
Sbjct: 6   VAVVGRPNVGKSTLFNTIAGKQISIVQDTPGVTRDRIYAEGNWLNYYFTMVDTGGIEPIS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD++ K+   +  L +E AD+I+ + ++ S
Sbjct: 66  DDVLLKQMRSQAELAIETADVIIFVTDVKS 95



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 8/117 (6%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           L D+L   +++  H  +  L E      KI ++G  N GKSSL N L  ++  IV+DI G
Sbjct: 154 LGDLL---DEVVKHFPKEGLEEEEDGTLKIALIGKPNVGKSSLTNKLLGENRVIVSDIAG 210

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRE----TDDIVEKEGIKRTFLEVENADLILLL 305
           TTRD +  ++   G      DTAG+R     T+DI E+  + RT   V+ AD+ ++L
Sbjct: 211 TTRDAIDTEVTYNGTPYIFIDTAGLRRKGKVTEDI-ERYSVIRTVAAVDRADICIVL 266


>gi|75909106|ref|YP_323402.1| GTP-binding protein EngA [Anabaena variabilis ATCC 29413]
 gi|123609166|sp|Q3M929|DER_ANAVT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|75702831|gb|ABA22507.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC
           29413]
          Length = 453

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  KI I+G  N GKSSL NA A ++  IV+ I GTTRD +   ++  G   ++ DTAGI
Sbjct: 175 NEIKIAIIGRPNVGKSSLLNAFAGEERVIVSPISGTTRDAIDTFIERNGQNYRLIDTAGI 234

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R+   I    E   I R F  +  AD++LL+
Sbjct: 235 RKKKSIDYGTEFFSINRAFKAIRRADVVLLV 265



 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LA +  AIV D PG TRD   +         ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYLPAYWSDREFQVVDTGGLVFND 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|92117234|ref|YP_576963.1| GTP-binding protein EngA [Nitrobacter hamburgensis X14]
 gi|122418012|sp|Q1QMP4|DER_NITHX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|91800128|gb|ABE62503.1| Small GTP-binding protein domain [Nitrobacter hamburgensis X14]
          Length = 460

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 29/179 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N L  ++  + +   GTTRD ++++L+ +G   +I DTAG+R  
Sbjct: 190 RVAIVGRPNAGKSTLINYLLGEERLLTSPEAGTTRDSISVELNWQGRDFRIFDTAGLRRR 249

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI-------------- 323
             I   +EK  +  T      A++++L+ +  ++ E    +  D I              
Sbjct: 250 SRIEEKLEKLSVADTLRAARFAEVVVLMMDAQNRFEEQDLRIADLIEREGRALVIAVNKW 309

Query: 324 -FIGTKSDLYSTYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLP 370
             +G +S L +    + DHL           +S   GEG++ L+  I+   +   +++P
Sbjct: 310 DLMGRQSSLIAALRTDADHLLPQVKGMPIVAVSGLMGEGVDRLMTAIQDAYAIWNRRVP 368



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I I+G  N GKS+LFN L  + +A+V D PG TRD       L      + DTAG+ E
Sbjct: 3   FTIAIIGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRREGQARLGDLDFTVIDTAGLDE 62


>gi|288930105|ref|ZP_06423943.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288328578|gb|EFC67171.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 437

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L K   AIV+D  GTTRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTKTRSAIVSDTAGTTRDRQYGKCDWAGREFSVVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DDI E    ++  +  E ADL+L L ++N+
Sbjct: 65  DDIFEDAIRRQVLVATEEADLVLFLVDVNT 94



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 6/105 (5%)

Query: 207 ISQGKLGEI--IRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           I+Q K GE   + +G  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    D
Sbjct: 160 IAQLKPGENENVEDGIPRFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRFD 219

Query: 264 LEGYLVKISDTAGIRETDDIVEK---EGIKRTFLEVENADLILLL 305
             G+   + DTAGIR  + + E      + R+   +E++D+ +L+
Sbjct: 220 KFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRAIEHSDVCILM 264


>gi|254362978|ref|ZP_04979042.1| possible GTP-binding protein [Mannheimia haemolytica PHL213]
 gi|153094634|gb|EDN75438.1| possible GTP-binding protein [Mannheimia haemolytica PHL213]
          Length = 511

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 224 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 283

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL  E     S +++S    + FI           
Sbjct: 284 GKVNLAVEKFSVIKTLQAIQDANVVLLTIEAREGISDQDLSL---LGFILNAGRSLVIVV 340

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + +K   +   +K  
Sbjct: 341 NKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTS 400

Query: 371 FSI 373
            S+
Sbjct: 401 TSM 403



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFL 88


>gi|148241565|ref|YP_001226722.1| GTP-binding protein EngA [Synechococcus sp. RCC307]
 gi|166225929|sp|A5GR60|DER_SYNR3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|147849875|emb|CAK27369.1| GTP-binding protein engA [Synechococcus sp. RCC307]
          Length = 452

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N +  ++ AIV+ I GTTRD +   ++ EG   K+ DTAGIR  
Sbjct: 178 QMAIVGRPNVGKSSLLNTVCGENRAIVSPIRGTTRDTIDTSIEREGQSWKLLDTAGIRRR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  +E +D+ +L+
Sbjct: 238 RSVNYGPEFFGINRSFKAIERSDVCVLV 265



 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    +    G   ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSRDAIVHDEPGVTRDRTYQEGFWGGRTFRVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|299133685|ref|ZP_07026879.1| ribosome-associated GTPase EngA [Afipia sp. 1NLS2]
 gi|298591521|gb|EFI51722.1| ribosome-associated GTPase EngA [Afipia sp. 1NLS2]
          Length = 461

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 29/181 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  NAGKS+L N L  ++  + +   GTTRD + +D++ +G  +++ DTAG+R  
Sbjct: 191 RVAVLGRPNAGKSTLINHLLGEERLLTSPEAGTTRDSIAVDVEWKGRKLRVFDTAGLRRR 250

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------FIFIGTKS 329
              DD +EK  +      V  A++++L+ +  ++ E    +  D         +    K 
Sbjct: 251 SRIDDKLEKLSVSDALRAVRFAEVVVLVVDAQNRFEEQDLRLADLVEREGRALVLAVNKW 310

Query: 330 DLY-------STYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           DL            E  DHL           IS   GEG++ LI  I+   +   K++P 
Sbjct: 311 DLVERAPSAIGKLRETADHLLPQVRGAPVVAISGLMGEGIDRLIGAIEKAYATWNKRIPT 370

Query: 372 S 372
           S
Sbjct: 371 S 371



 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 25/37 (67%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + I I+G  N GKS+LFN L  + +A+V D PG TRD
Sbjct: 3   FTIAIIGRPNVGKSTLFNRLVGQKLALVDDQPGVTRD 39


>gi|260887150|ref|ZP_05898413.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185]
 gi|330839080|ref|YP_004413660.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185]
 gi|260863212|gb|EEX77712.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185]
 gi|329746844|gb|AEC00201.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185]
          Length = 442

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L +K V+IV D+PG TRD + +D +  G    + DT GI  +T
Sbjct: 6   VAIVGRPNVGKSTLFNKLGRKRVSIVDDLPGVTRDRIYLDAEWLGKEFTMIDTGGIELDT 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D++ +   ++  + +E AD+IL L
Sbjct: 66  SDVILRSMRQQAQIAMEEADVILFL 90



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           I ++G  N GKSSL NAL  ++  IV+D+ GTTRD +      E     + DTAG+R   
Sbjct: 179 IAVIGRPNVGKSSLVNALLGEERVIVSDVAGTTRDAIDTHFMAEDTKFILIDTAGMRRKG 238

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           + D  +E+  + R    V+ AD++L++
Sbjct: 239 KIDAPIERYSVMRALRAVDRADVVLVV 265


>gi|255525663|ref|ZP_05392596.1| small GTP-binding protein [Clostridium carboxidivorans P7]
 gi|296185422|ref|ZP_06853832.1| ribosome-associated GTPase EngA [Clostridium carboxidivorans P7]
 gi|255510649|gb|EET86956.1| small GTP-binding protein [Clostridium carboxidivorans P7]
 gi|296050256|gb|EFG89680.1| ribosome-associated GTPase EngA [Clostridium carboxidivorans P7]
          Length = 438

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI  +G  N GKSSL N L  +D  IV++IPGTTRD +   L+ E     + DTAG+R  
Sbjct: 178 KIAFVGKPNVGKSSLINKLLGEDRVIVSEIPGTTRDAIDSYLETEQGKFTLIDTAGLRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E+  + RT+  +E AD+ +L+
Sbjct: 238 SKVKEEIERYSVIRTYTAIERADVCILM 265



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +A K ++IV D PG TRD +  + +   Y   I DT GI  E 
Sbjct: 6   VAIVGRPNVGKSTLFNKMAGKRISIVQDTPGVTRDRIYAEAEWLKYNFTIIDTGGIEPEN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            DI+  +  ++  + VE A++I+ +
Sbjct: 66  SDIIISQMRRQATMAVETANVIVFI 90


>gi|91203327|emb|CAJ72966.1| similar to GTP-binding protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 446

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  NAGKS+L N LA+K   IV+++PGTTRD + +  +++       DTAG+R  
Sbjct: 180 KMAIVGKRNAGKSTLINTLARKQRVIVSEVPGTTRDSIDVKFEMDNKQFLAIDTAGVRKK 239

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +  D +E   + R    +  AD++L L
Sbjct: 240 SQVKDSIEFYSMARAERSIRRADVVLFL 267



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 99/227 (43%), Gaps = 48/227 (21%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           VI+G  N GKS+LFN  +++ ++IV    G TRD ++ ++  +  + ++ DT G+  TD 
Sbjct: 7   VIVGRPNVGKSALFNCFSRRRISIVEPTSGVTRDRVSTEIRHKDCVFELVDTGGMGITDS 66

Query: 283 IVEKEGIKRTF-LEVENADLILLLKEINS----------------KKEISFPKNIDFIFI 325
               E I+    + +  AD++L + ++                  KKE+        I I
Sbjct: 67  DGLTEDIEMQIEVALAAADVVLFVVDVREGVTPLDRIVAERLRHVKKEV--------ILI 118

Query: 326 GTKSDL--YSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             K D   +     E++       H +S+  G G  +L++KI S+        P   P  
Sbjct: 119 ANKVDTPKFEHSMGEFNELGFGEPHPVSAIEGYGRSDLLDKIISL-------FPLQEP-- 169

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL-RLASVSLGKITGC 422
               Y  + +V  ++MA + +++ G   +   L R   V + ++ G 
Sbjct: 170 ----YDNTDSVPIMKMAIVGKRNAGKSTLINTLARKQRVIVSEVPGT 212


>gi|166712110|ref|ZP_02243317.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 465

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 83/162 (51%), Gaps = 17/162 (10%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209
           W+ KL      +   +D ++EE V++  ++    +++ L             ++ + + +
Sbjct: 106 WLRKLARQTVLVINKIDGTDEETVRSEFARYGFCNVVALSAAHRQGIDELLEEVGARLPE 165

Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              GE++ N     +I  +G  N GKS+L N L  ++  I +++PGTTRD + +DL+ +G
Sbjct: 166 EGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDG 225

Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
              ++ DTAG+R   + ++ VEK    +T   +E   + +L+
Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267



 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + ++G  N GKS++FNAL +   A+V D PG TRD
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39


>gi|255021269|ref|ZP_05293318.1| GTP-binding protein EngA [Acidithiobacillus caldus ATCC 51756]
 gi|254969280|gb|EET26793.1| GTP-binding protein EngA [Acidithiobacillus caldus ATCC 51756]
          Length = 447

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 79/145 (54%), Gaps = 12/145 (8%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           E L D +F   D++  + +    E+  +G +I +LG  N GKS+L NA+  +   IV D 
Sbjct: 153 ETLLDAIF--ADLA--VPEEAAAELSLSGPRIAVLGRPNVGKSTLVNAMLGEQRVIVYDA 208

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKE 307
           PGTTRD + I  +  G    + DTAGIR    +   +EK  + +T   ++ AD++L++  
Sbjct: 209 PGTTRDSIRIPYERAGRPYVMIDTAGIRRRARVGEGLEKLSVLKTLAALKEADVVLMV-- 266

Query: 308 INSKKEISFPKNIDFIFIGTKSDLY 332
           ++++  ++   + D   +G  ++L+
Sbjct: 267 LDARDGVT---DQDAHLVGVAAELW 288



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN L +   A+V D+PG TRD
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSREALVADLPGLTRD 39


>gi|238921035|ref|YP_002934550.1| GTP-binding protein EngA [Edwardsiella ictaluri 93-146]
 gi|259645874|sp|C5BES7|DER_EDWI9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238870604|gb|ACR70315.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 494

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 63/103 (61%), Gaps = 5/103 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I    KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTA
Sbjct: 203 INQPIKIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTA 262

Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           G+R   +  D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 263 GVRKRGKVTDTVEKFSVIKTLQAIEDANVVLLV--IDARQGIS 303



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ G+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVNGHEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ + +E AD++L L
Sbjct: 65  NGVETHMAEQSLMAIEEADIVLFL 88


>gi|237807666|ref|YP_002892106.1| small GTP-binding protein [Tolumonas auensis DSM 9187]
 gi|259645887|sp|C4LC41|DER_TOLAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|237499927|gb|ACQ92520.1| small GTP-binding protein [Tolumonas auensis DSM 9187]
          Length = 498

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  I+G  N GKS+L N +  +D  IV D+PGTTRD + I L+ +     + DTAG+R+ 
Sbjct: 213 KFAIIGRPNVGKSTLTNRMLGEDRVIVYDLPGTTRDSIYIPLERDDQHYIVIDTAGVRKK 272

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +T   +E+A+++LLL  I++++ +S
Sbjct: 273 KKIYETVEKFSVVKTLQAIEDANVVLLL--IDAREGVS 308



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       ++     + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAVVDDMNFIVVDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E +  +++   ++ +D++L +
Sbjct: 65  EGIEVKMAEQSLQAIDESDVVLFM 88


>gi|37222112|gb|AAP49306.1| Uvs063 [uncultured bacterium]
          Length = 435

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    D  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSFINALIGQDRYIVTDIAGTTRDAIDTKFDRFGFEFNLVDTAGIRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E+AD+ +L+
Sbjct: 237 AKVKEDLEFYSVMRSVRAIEHADICILV 264



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++  AIV  + G TRD      +  G    + DT G +R +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYVRGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           DD+ E E  K+  L ++ AD+I+ + ++
Sbjct: 65  DDVFEGEIRKQVELAIDEADVIIFVVDV 92


>gi|238924644|ref|YP_002938160.1| GTP-binding protein EngA [Eubacterium rectale ATCC 33656]
 gi|259645876|sp|C4ZD63|DER_EUBR3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238876319|gb|ACR76026.1| GTP-binding protein EngA [Eubacterium rectale ATCC 33656]
 gi|291525305|emb|CBK90892.1| ribosome-associated GTPase EngA [Eubacterium rectale DSM 17629]
 gi|291529236|emb|CBK94822.1| ribosome-associated GTPase EngA [Eubacterium rectale M104/1]
          Length = 441

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N LA++D  IV+DI GTTRD +   +  +G      DTAG+R  
Sbjct: 179 RVAIVGKPNVGKSSLINKLAREDRVIVSDIAGTTRDAIDTAIKYDGKEYIFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + I   +E+  I R    VE AD+++++
Sbjct: 239 NKIKEDIERYSIIRAVSAVERADVVIVV 266



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+    Y   + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNALAGERISIVKDTPGVTRDRIYADVSWLDYNFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            D++  +  ++  + ++ AD+I+ + ++
Sbjct: 66  GDVILSQMREQAQIAIDTADVIIFITDV 93


>gi|260910017|ref|ZP_05916700.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635847|gb|EEX53854.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 437

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L K   AIV+D  GTTRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTKTRSAIVSDTAGTTRDRQYGKCDWSGREFSVVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DDI E    ++  +  E ADL+L L ++N+
Sbjct: 65  DDIFEDAIRRQVLVATEEADLVLFLVDVNT 94



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  N GKSS+ NA   +D  IVT+I GTTRD +    D  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRK 236

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
           + + E      + R+   +E++D+ +L+
Sbjct: 237 NKVTEDLEFYSVMRSIRSIEHSDVCILM 264


>gi|167854675|ref|ZP_02477455.1| GTP-binding protein EngA [Haemophilus parasuis 29755]
 gi|167854212|gb|EDS25446.1| GTP-binding protein EngA [Haemophilus parasuis 29755]
          Length = 504

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 276

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFIFIGTKS----- 329
             +   VEK  + +T   +++A+++LL    ++  S +++S    + FI    KS     
Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARDGVSDQDLSL---LGFILNAGKSLVIVV 333

Query: 330 --------DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
                   D+      E D           H IS+  G G+  L + I+       KK+ 
Sbjct: 334 NKWDGLSQDIKDNVKSELDRRLDFIDFARVHFISALHGSGVGNLFSSIQEAYQCATKKMT 393

Query: 371 FSI 373
            S+
Sbjct: 394 TSM 396



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 82/163 (50%), Gaps = 17/163 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ G+   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRNALVADFPGLTRDRKYGHANIAGHDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-- 331
           + VE++  +++ L ++ AD++L L +  +          +    +N   + +  K+D   
Sbjct: 65  EGVEEKMAEQSLLAIKEADVVLFLVDARAGLLPADVGIAQYLRQRNKTTVVVANKTDGID 124

Query: 332 YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFK 367
             ++  E+  L       I++  G G+ +LI ++ + L+ K +
Sbjct: 125 ADSHIAEFYQLGLGEVEPIAAAQGRGVTQLIEQVLAPLAEKLE 167


>gi|323141760|ref|ZP_08076630.1| ribosome biogenesis GTPase Der [Phascolarctobacterium sp. YIT
           12067]
 gi|322413749|gb|EFY04598.1| ribosome biogenesis GTPase Der [Phascolarctobacterium sp. YIT
           12067]
          Length = 442

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ ++G  N GKSS+FNAL  ++ +IV+DI GTTRD +   +   G      DTAG+R  
Sbjct: 180 KVALIGRPNVGKSSIFNALVGEERSIVSDIAGTTRDAIDTPVVRNGQKYLFIDTAGMRRK 239

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + D+ +EK  + R+   V+ +D++L++
Sbjct: 240 AKVDEPIEKYSVMRSLRAVDRSDVVLMV 267



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 21/117 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG----- 276
           + I+G  N GKS+LFN  A   ++IV D PG TRD L    +   +   + DT G     
Sbjct: 6   VAIVGRPNVGKSTLFNIFANSRISIVEDTPGVTRDRLYATAEWLDHEFMMVDTGGIEIMN 65

Query: 277 -------IRETDDIVEKEG-------IKRTFLEVENADLILLLKEINSKKEISFPKN 319
                  IR+   I  KE          R  +  E+AD+  LL++  SKK I    N
Sbjct: 66  ADAIAVSIRQQAQIAIKEADVILFVCDARAGITTEDADVARLLRQ--SKKPIVLAVN 120


>gi|153843824|ref|ZP_01993596.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810]
 gi|149745287|gb|EDM56538.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810]
          Length = 286

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R  
Sbjct: 126 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRR 185

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 186 GRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 221


>gi|219870952|ref|YP_002475327.1| GTP-binding protein EngA [Haemophilus parasuis SH0165]
 gi|254783156|sp|B8F4X7|DER_HAEPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|219691156|gb|ACL32379.1| GTP-binding protein EngA [Haemophilus parasuis SH0165]
          Length = 504

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 276

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFIFIGTKS----- 329
             +   VEK  + +T   +++A+++LL    ++  S +++S    + FI    KS     
Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARDGVSDQDLSL---LGFILNAGKSLVIVV 333

Query: 330 --------DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
                   D+      E D           H IS+  G G+  L + I+       KK+ 
Sbjct: 334 NKWDGLSQDIKDNVKSELDRRLDFIDFARVHFISALHGSGVGNLFSSIQEAYQCATKKMT 393

Query: 371 FSI 373
            S+
Sbjct: 394 TSM 396



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 82/163 (50%), Gaps = 17/163 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ G+   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRNALVADFPGLTRDRKYGHANIAGHDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-- 331
           + VE++  +++ L ++ AD++L L +  +          +    +N   + +  K+D   
Sbjct: 65  EGVEEKMAEQSLLAIKEADVVLFLVDARAGLLPADVGIAQYLRQRNKTTVVVANKTDGID 124

Query: 332 YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFK 367
             ++  E+  L       I++  G G+ +LI ++ + L+ K +
Sbjct: 125 ADSHIAEFYQLGLGEVEPIAAAQGRGVTQLIEQVLAPLAEKLE 167


>gi|146299639|ref|YP_001194230.1| GTP-binding protein EngA [Flavobacterium johnsoniae UW101]
 gi|238686648|sp|A5FIR0|DER_FLAJ1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|146154057|gb|ABQ04911.1| small GTP-binding protein [Flavobacterium johnsoniae UW101]
          Length = 437

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    D  G+   + DTAGIR  
Sbjct: 179 RFAVVGRPNAGKSSFINALIGQDRYIVTDIAGTTRDAIDTKFDRFGFEFNLVDTAGIRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E+AD+ +L+
Sbjct: 239 AKVKEDLEFYSVMRSVRAIEHADVCILV 266



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++  AIV  + G TRD      +  G    + DT G +R +
Sbjct: 6   VAIVGRPNVGKSTLFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYVRGS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           DD+ E E  K+  L ++ AD+I+ + ++
Sbjct: 66  DDVFEGEIRKQVELAIDEADVIIFVVDV 93


>gi|22125256|ref|NP_668679.1| GTP-binding protein EngA [Yersinia pestis KIM 10]
 gi|45442513|ref|NP_994052.1| GTP-binding protein EngA [Yersinia pestis biovar Microtus str.
           91001]
 gi|108808309|ref|YP_652225.1| GTP-binding protein EngA [Yersinia pestis Antiqua]
 gi|108811426|ref|YP_647193.1| GTP-binding protein EngA [Yersinia pestis Nepal516]
 gi|145599492|ref|YP_001163568.1| GTP-binding protein EngA [Yersinia pestis Pestoides F]
 gi|149365335|ref|ZP_01887370.1| putative GTP-binding protein [Yersinia pestis CA88-4125]
 gi|153948065|ref|YP_001400171.1| GTP-binding protein EngA [Yersinia pseudotuberculosis IP 31758]
 gi|162419655|ref|YP_001605020.1| GTP-binding protein EngA [Yersinia pestis Angola]
 gi|165925991|ref|ZP_02221823.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937070|ref|ZP_02225635.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008076|ref|ZP_02228974.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212264|ref|ZP_02238299.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398998|ref|ZP_02304522.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421200|ref|ZP_02312953.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423353|ref|ZP_02315106.1| GTP-binding protein EngA [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170023543|ref|YP_001720048.1| GTP-binding protein EngA [Yersinia pseudotuberculosis YPIII]
 gi|218929935|ref|YP_002347810.1| GTP-binding protein EngA [Yersinia pestis CO92]
 gi|229838454|ref|ZP_04458613.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895156|ref|ZP_04510332.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Yersinia pestis
           Pestoides A]
 gi|229899021|ref|ZP_04514165.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901683|ref|ZP_04516805.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Yersinia pestis
           Nepal516]
 gi|270489878|ref|ZP_06206952.1| ribosome-associated GTPase EngA [Yersinia pestis KIM D27]
 gi|294504563|ref|YP_003568625.1| GTP-binding protein EngA [Yersinia pestis Z176003]
 gi|26006726|sp|Q8ZCT9|DER_YERPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123246587|sp|Q1CK87|DER_YERPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123372277|sp|Q1C5J2|DER_YERPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225935|sp|A4TMT3|DER_YERPP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166920105|sp|A7FFZ3|DER_YERP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238687331|sp|A9R7Z8|DER_YERPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238688573|sp|B1JSA4|DER_YERPY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|21958127|gb|AAM84930.1|AE013738_7 putative GTP-binding factor [Yersinia pestis KIM 10]
 gi|45437378|gb|AAS62929.1| putative GTP-binding protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775074|gb|ABG17593.1| GTP-binding protein [Yersinia pestis Nepal516]
 gi|108780222|gb|ABG14280.1| putative GTP-binding protein [Yersinia pestis Antiqua]
 gi|115348546|emb|CAL21486.1| putative GTP-binding protein [Yersinia pestis CO92]
 gi|145211188|gb|ABP40595.1| GTP-binding protein [Yersinia pestis Pestoides F]
 gi|149291748|gb|EDM41822.1| putative GTP-binding protein [Yersinia pestis CA88-4125]
 gi|152959560|gb|ABS47021.1| GTP-binding protein EngA [Yersinia pseudotuberculosis IP 31758]
 gi|162352470|gb|ABX86418.1| GTP-binding protein EngA [Yersinia pestis Angola]
 gi|165914933|gb|EDR33545.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922195|gb|EDR39372.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992458|gb|EDR44759.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206195|gb|EDR50675.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960689|gb|EDR56710.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051502|gb|EDR62910.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057523|gb|EDR67269.1| GTP-binding protein EngA [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750077|gb|ACA67595.1| small GTP-binding protein [Yersinia pseudotuberculosis YPIII]
 gi|229681612|gb|EEO77706.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Yersinia pestis
           Nepal516]
 gi|229687966|gb|EEO80038.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694820|gb|EEO84867.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701918|gb|EEO89941.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Yersinia pestis
           Pestoides A]
 gi|262362442|gb|ACY59163.1| GTP-binding protein EngA [Yersinia pestis D106004]
 gi|262366551|gb|ACY63108.1| GTP-binding protein EngA [Yersinia pestis D182038]
 gi|270338382|gb|EFA49159.1| ribosome-associated GTPase EngA [Yersinia pestis KIM D27]
 gi|294355022|gb|ADE65363.1| GTP-binding protein EngA [Yersinia pestis Z176003]
 gi|320016011|gb|ADV99582.1| ferrous iron transport protein B [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 495

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324
           D VE +   ++ L +E AD++L +               + + S+++ +F      D I 
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358
             T + D YS    E  H I++  G G+ +LI  +
Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDDREYILIDTAGVRKR 268

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +T   +E+++++LL+  I+++  IS
Sbjct: 269 GKITETVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 304


>gi|260776629|ref|ZP_05885524.1| GTP-binding protein EngA [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607852|gb|EEX34117.1| GTP-binding protein EngA [Vibrio coralliilyticus ATCC BAA-450]
          Length = 495

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 208 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 267

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 268 KRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 303



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAEQSLAAIDEADVVLFM 88


>gi|303239305|ref|ZP_07325833.1| ribosome-associated GTPase EngA [Acetivibrio cellulolyticus CD2]
 gi|302593091|gb|EFL62811.1| ribosome-associated GTPase EngA [Acetivibrio cellulolyticus CD2]
          Length = 440

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 5/89 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K+ ++G  NAGKSSL N +  +D  IV+DIPGTTRD + T   + EG  V I DTAGIR 
Sbjct: 179 KVAVIGKPNAGKSSLINKVLGEDRVIVSDIPGTTRDAIDTYVENEEGKFVFI-DTAGIRR 237

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              I   +E+    R++  +E AD+ L++
Sbjct: 238 QSKINENIERYSTIRSWTAIERADVCLIM 266



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+ FN LA + ++IV D PG TRD +  +++       + DT GI   +
Sbjct: 6   VAIVGRPNVGKSTFFNYLAGRRISIVEDTPGVTRDRIYTEVEWRNRKFTLIDTGGIEPYS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +D + ++   +  + +E A++I+ +
Sbjct: 66  EDKIMQQMKSQAEIAIETANVIVFM 90


>gi|261252182|ref|ZP_05944755.1| GTP-binding protein EngA [Vibrio orientalis CIP 102891]
 gi|260935573|gb|EEX91562.1| GTP-binding protein EngA [Vibrio orientalis CIP 102891]
          Length = 495

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 208 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 267

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 268 KRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 303



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAEQSLAAIDEADVVLFM 88


>gi|237747713|ref|ZP_04578193.1| GTP-binding protein engA [Oxalobacter formigenes OXCC13]
 gi|229379075|gb|EEO29166.1| GTP-binding protein engA [Oxalobacter formigenes OXCC13]
          Length = 446

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS++ NAL  ++  I  D+PGTTRD + I  + +G    + DTAG+R+ 
Sbjct: 183 KLAIVGRPNVGKSTMINALLGEERVIAFDLPGTTRDAIEIPFERDGKQYTLVDTAGLRKR 242

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   +EK  + +T   +  A+++LLL  ++++++IS
Sbjct: 243 GKVFQAIEKFSVVKTLQAISEANVVLLL--MDAQQDIS 278



 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRAALVADYPGLTRDRHYGEGRMGDRPFLVIDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V KEG+     K+T   V  AD+++ +
Sbjct: 61  EPVVKEGVMQEMAKQTKQAVAEADVVIFI 89


>gi|294637684|ref|ZP_06715962.1| ribosome-associated GTPase EngA [Edwardsiella tarda ATCC 23685]
 gi|291089160|gb|EFE21721.1| ribosome-associated GTPase EngA [Edwardsiella tarda ATCC 23685]
          Length = 496

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R  
Sbjct: 210 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 269

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 270 GKVTDTVEKFSVIKTLQAIEDANVVLLV--IDARQGIS 305



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 51/89 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ G+   I DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVNGHEFIIIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + VE    +++ L +E AD++L L +  S
Sbjct: 65  NGVETHMAEQSLLAIEEADIVLFLVDARS 93


>gi|291085040|ref|ZP_06570912.1| ribosome-associated GTPase EngA [Citrobacter youngae ATCC 29220]
 gi|291071734|gb|EFE09843.1| ribosome-associated GTPase EngA [Citrobacter youngae ATCC 29220]
          Length = 504

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 218 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 277

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 278 GKITEAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 313



 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 19  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 78

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 79  DGVETRMAEQSLLAIEEADVVLFM 102


>gi|257791089|ref|YP_003181695.1| small GTP-binding protein [Eggerthella lenta DSM 2243]
 gi|317488189|ref|ZP_07946760.1| ribosome-associated GTPase EngA [Eggerthella sp. 1_3_56FAA]
 gi|325830789|ref|ZP_08164173.1| ribosome biogenesis GTPase Der [Eggerthella sp. HGA1]
 gi|257474986|gb|ACV55306.1| small GTP-binding protein [Eggerthella lenta DSM 2243]
 gi|316912694|gb|EFV34232.1| ribosome-associated GTPase EngA [Eggerthella sp. 1_3_56FAA]
 gi|325487196|gb|EGC89639.1| ribosome biogenesis GTPase Der [Eggerthella sp. HGA1]
          Length = 438

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G  + I+G  NAGKSSL N L   D +IV+D+ GTTRD +   +  +G    I DTAG+
Sbjct: 177 DGINVAIIGRPNAGKSSLTNKLTANDRSIVSDVAGTTRDAIDTHIVHDGQRYTIVDTAGL 236

Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305
           R   + D+ VE  G  R    ++ A++ LL+
Sbjct: 237 RRKSQIDEDVEYYGFVRAMRAIDRANVALLV 267



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+  N +A+ D AIV ++ G TRD    + D  G   K+ DT GI   D
Sbjct: 6   VAVVGRPNVGKSTFVNRIAQADEAIVHEMRGVTRDRSYHEADWNGVDFKLIDTGGIEMGD 65

Query: 282 DIVEKEGIKRTFLEVEN-ADLILLL 305
           D   +  I+   L   N AD+IL L
Sbjct: 66  DDAFQGSIRNQALAGANEADVILFL 90


>gi|225181110|ref|ZP_03734557.1| small GTP-binding protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168307|gb|EEG77111.1| small GTP-binding protein [Dethiobacter alkaliphilus AHT 1]
          Length = 440

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV--LTIDLDLEGYLVKISDTAGIR 278
           ++ I+G  N GKSSL N L+  +  IV+D+PGTTRD   L I+ D   YL    DTAGIR
Sbjct: 175 RVAIIGRPNVGKSSLTNKLSGTERVIVSDMPGTTRDAIDLLIERDNRKYL--FVDTAGIR 232

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305
              + D+ VE   + R+    E+AD++L+L
Sbjct: 233 RKSKVDEAVEYYSVLRSIRAAESADVVLML 262



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L ++ +AI     G TRD +    D  G+   + DT G+   +
Sbjct: 6   VAIVGRPNVGKSTLFNRLIQRRLAIEEPTAGVTRDRIYGRADWTGHEFWLIDTGGLTFEE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           D + +E  ++  L +E A++I+ + ++ S
Sbjct: 66  DKISREIHRQVKLAMEEANVIIFVVDVRS 94


>gi|261495041|ref|ZP_05991508.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309283|gb|EEY10519.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 504

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 276

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 277 GKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVV 333

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + +K   +   +K  
Sbjct: 334 NKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTS 393

Query: 371 FSI 373
            S+
Sbjct: 394 TSM 396



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 49/81 (60%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T++ V
Sbjct: 1   MGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTEEGV 60

Query: 285 EKEGIKRTFLEVENADLILLL 305
           E++  +++ L +E AD++L L
Sbjct: 61  EEKMAEQSLLAIEEADVVLFL 81


>gi|326575993|gb|EGE25916.1| GTP-binding protein EngA [Moraxella catarrhalis CO72]
          Length = 472

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 61/97 (62%), Gaps = 5/97 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N L  +D  +V D+PGTTRD + I  + EG    + DTAG+R  
Sbjct: 181 KLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIYIPFEREGRSYVLIDTAGVRRR 240

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
              D+ VEK  + +T   +++A++++++  I++K+ I
Sbjct: 241 GRIDEKVEKFSVVKTLQAIKDANVVMVV--IDAKEGI 275



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L K   A+V D+ G TRD    D   E     + DT GI E D
Sbjct: 7   VALIGRPNVGKSTLFNQLTKSRQALVADLAGLTRDRQYGDAHFENKSFIVVDTGGIGEMD 66

Query: 282 D---IVEKEGIKRTFLEVENADLILLL 305
           D    ++     +++  +  AD+++ +
Sbjct: 67  DGSGNIDDYMATQSYTAIHEADIVVFV 93


>gi|261493816|ref|ZP_05990330.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261310519|gb|EEY11708.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 511

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 224 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 283

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 284 GKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVV 340

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + +K   +   +K  
Sbjct: 341 NKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTS 400

Query: 371 FSI 373
            S+
Sbjct: 401 TSM 403



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFL 88


>gi|163802477|ref|ZP_02196370.1| GTP-binding protein EngA [Vibrio sp. AND4]
 gi|159173778|gb|EDP58593.1| GTP-binding protein EngA [Vibrio sp. AND4]
          Length = 498

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 211 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 270

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 271 GRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 306



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       L E +   + DT GI  T
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQASLGEEHEFIVIDTGGIDGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           ++ VE +  +++   ++ AD++L L
Sbjct: 65  EEGVETKMAEQSLAAIDEADVVLFL 89


>gi|113868334|ref|YP_726823.1| GTP-binding protein EngA [Ralstonia eutropha H16]
 gi|113527110|emb|CAJ93455.1| GTP-binding protein [Ralstonia eutropha H16]
          Length = 456

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 67/111 (60%), Gaps = 8/111 (7%)

Query: 211 KLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +LGE I +   G KI I+G  N GKS+L N L  ++  I  D+PGTTRD + ++ +  G 
Sbjct: 178 ELGEEIPDEGKGVKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGK 237

Query: 268 LVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              + DTAG+R    +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 238 PYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSIADANVVILL--LDAQQDIS 286



 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 28/176 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + +   A+V D+PG TRD    +  +        DT G     
Sbjct: 14  IALVGRPNVGKSTLFNRMTRSRDALVADLPGLTRDRHYGEGRIGERPFIAIDTGGF---- 69

Query: 282 DIVEKEGI-----KRTFLEVENADLILL------------------LKEINSKKEISFPK 318
           + V KEGI     K+T   V  AD+++                   L++   +  ++  K
Sbjct: 70  EPVVKEGIVAEMAKQTKQAVVEADVVIFIVDGRLGLAPQDRAIADYLRKTGRRIMLAVNK 129

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                +    +D Y     +  + IS+  G+G+ EL+++   +   +  +L   IP
Sbjct: 130 AEGMKYTSVAADFYELGMGD-PYAISAAHGDGVSELVDEAIELAVQERPELGEEIP 184


>gi|254468967|ref|ZP_05082373.1| GTP-binding protein EngA [beta proteobacterium KB13]
 gi|207087777|gb|EDZ65060.1| GTP-binding protein EngA [beta proteobacterium KB13]
          Length = 466

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 3/93 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I + +KI ILG  NAGKS+L N+L   D  I +D+PGTT D + I+++L      + DTA
Sbjct: 172 IDDNFKIAILGKPNAGKSTLINSLIGSDRLIASDLPGTTIDSIEIEIELNSDKYILVDTA 231

Query: 276 GIRETDDIVEKE---GIKRTFLEVENADLILLL 305
           GIR    +  KE    + ++    +NA+ ILL+
Sbjct: 232 GIRRKGKVTVKEEKFALLKSLESAKNANFILLI 264



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKSSLFN L K   AIV++  G TRD       ++    +I D+ G+   +
Sbjct: 4   VAIVGRPNVGKSSLFNKLTKSKKAIVSEFEGLTRDRQVGKSVIDNLAYEIIDSGGLNFSK 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            ++ ++ + + +T L  + ADLIL + +  S
Sbjct: 64  NNNALDTQILNQTNLAADEADLILFVVDYKS 94


>gi|163784433|ref|ZP_02179314.1| GTP-binding protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880300|gb|EDP73923.1| GTP-binding protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 451

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 3/86 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  NAGKSS+ NA+  ++ A+V++IPGTTRDV+   + +E    +  DTAG+R+ 
Sbjct: 186 KVAIIGKPNAGKSSILNAITGEERALVSNIPGTTRDVVDTMVKIENKTYRFLDTAGLRKK 245

Query: 281 DDI---VEKEGIKRTFLEVENADLIL 303
             +   VE   + RT   ++ AD+++
Sbjct: 246 SKVDYGVEFFSVGRTLDAIKKADVVV 271



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y++ I+G  N GKSSLFN +  +  AIV DIPG TRD L    +      ++ DT G  E
Sbjct: 2   YRVAIVGRPNVGKSSLFNRIIGQKKAIVEDIPGITRDRLIQTTEWRNIPFELVDTGGYIE 61

Query: 280 TDDIVEKEGIKRTF-LEVENADLILLL 305
           TDD      I++    E+E+AD  +L+
Sbjct: 62  TDDDKFAPFIRKQIEKEMEDADAFILV 88


>gi|94311040|ref|YP_584250.1| GTP-binding protein EngA [Cupriavidus metallidurans CH34]
 gi|123383733|sp|Q1LLJ5|DER_RALME RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|93354892|gb|ABF08981.1| GTP-binding protein [Cupriavidus metallidurans CH34]
          Length = 447

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 64/102 (62%), Gaps = 5/102 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N L  ++  I  D+PGTTRD + ++ +  G    + DTAG
Sbjct: 178 QHGVKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAG 237

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +R+   +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 238 LRKRGKVFEAIEKFSVVKTLQSIADANVVVLL--LDAQQDIS 277



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 28/159 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRMTRSRDALVADLPGLTRDRHYGEGRIGDRPFIVIDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILL------------------LKEINSKKEISFPK 318
           + V KEGI     K+T   V  AD+++                   L++   +  ++  K
Sbjct: 61  EPVAKEGIVAEMAKQTRQAVVEADVVIFLVDGRLGLAPQDRVIADYLRKTGRRVMLAINK 120

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
                +    +D Y     +  + ISS  G+G+ EL+++
Sbjct: 121 AEGMKYTSVAADFYELGMGD-PYAISSTHGDGVRELVDE 158


>gi|269962406|ref|ZP_06176756.1| GTP-binding protein [Vibrio harveyi 1DA3]
 gi|269832902|gb|EEZ87011.1| GTP-binding protein [Vibrio harveyi 1DA3]
          Length = 498

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 211 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 270

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 271 GRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 306



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       L E +   + DT GI  T
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           ++ VE +  +++   ++ AD++L L
Sbjct: 65  EEGVETKMAQQSLAAIDEADVVLFL 89


>gi|165975864|ref|YP_001651457.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|238687527|sp|B0BTQ8|DER_ACTPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|165875965|gb|ABY69013.1| conserved putative GTP-binding protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 506

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 278

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 279 GKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVV 335

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + +K   +   +K  
Sbjct: 336 NKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTS 395

Query: 371 FSI 373
            S+
Sbjct: 396 TSM 398



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYNFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFL 88


>gi|238763554|ref|ZP_04624515.1| GTP-binding protein engA [Yersinia kristensenii ATCC 33638]
 gi|238698186|gb|EEP90942.1| GTP-binding protein engA [Yersinia kristensenii ATCC 33638]
          Length = 494

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324
           D VE +   ++ L +E AD++L +               + + S+++ +F      D I 
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 325 IGT-KSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
             T  +D YS    E  H I++  G G+ +LI  +
Sbjct: 125 ADTAAADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMTRDEREYILIDTAGVRKR 267

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +T   +E+++++LL+  I+++  IS
Sbjct: 268 GKITETVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 303


>gi|257063685|ref|YP_003143357.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Slackia heliotrinireducens DSM 20476]
 gi|256791338|gb|ACV22008.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Slackia heliotrinireducens DSM 20476]
          Length = 438

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + I+G  NAGKSSL N L  +D +IV+D+ GTTRD +   ++ +G +  I DTAG+R
Sbjct: 178 GINVAIIGRPNAGKSSLTNRLIGRDRSIVSDVAGTTRDAIDTRVEHDGKVYTIVDTAGLR 237

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLLKE 307
              + D+ VE     R    ++ AD+ +L+ +
Sbjct: 238 RKSQIDEDVEYYSYVRAMRAIDRADVAILVMD 269



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 28/170 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+  N +A  D AIV ++ G TRD    + D  G    + DT GI   D
Sbjct: 6   VAVVGRPNVGKSTFVNRIAHADDAIVHEMRGVTRDRSYHNADWRGVHFTLIDTGGIEMGD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSKKEISFP--------KNID---FIFIGTKS 329
           D   +  I+ + F+  + AD+IL +  ++ K  I+          + +D   F+ +  K 
Sbjct: 66  DDAFQSSIRDQAFMAADEADVILFM--VDGKTGITADDEEVARVLRKVDTPVFLLV-NKM 122

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           D  S   E ++           ISS  G G  +L++++ +IL    ++LP
Sbjct: 123 DNPSKMEENWEFYSLGLGDPRSISSTHGHGTGDLLDEVVAIL----RELP 168


>gi|291522204|emb|CBK80497.1| ribosome-associated GTPase EngA [Coprococcus catus GD/7]
          Length = 441

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D++       + DT GI   T
Sbjct: 6   VAIIGRPNVGKSTLFNALAGQQISIVKDTPGVTRDRIYADVNWLNTQFTMIDTGGIEPST 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           +D++ K   ++  + +E AD+I+ L ++
Sbjct: 66  NDLILKSMREQAEIAIETADVIIFLTDV 93



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 8/131 (6%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           +SK  L D+L   +++  H   G   E       + I+G  N GKSSL N L  ++  IV
Sbjct: 149 NSKLGLGDML---DEVIKHFKPGTAEEEADERPHVAIVGKPNVGKSSLINKLTGENRVIV 205

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILL 304
           ++I GTTRD +   +   G      DTAG+R    I   +E+  I RT   VE A++++L
Sbjct: 206 SNIAGTTRDAIDTVIKHNGKEYVFIDTAGLRRKSKIKEDIERYSIIRTVSAVERANVVVL 265

Query: 305 LKEINSKKEIS 315
           +  I++K+ ++
Sbjct: 266 M--IDAKEGVT 274


>gi|168186800|ref|ZP_02621435.1| GTP-binding protein EngA [Clostridium botulinum C str. Eklund]
 gi|169295122|gb|EDS77255.1| GTP-binding protein EngA [Clostridium botulinum C str. Eklund]
          Length = 438

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D+PG TRD +  + +       I DT GI  E 
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAEAEWLNNNFTIIDTGGIEPEN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI+  +  ++  L +E AD++L +
Sbjct: 66  DDIIVAQMRRQAQLAIEMADVVLFI 90



 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N +  ++  IV++IPGTTRD +   ++ E     + DTAG+R  
Sbjct: 178 RIAMIGRPNVGKSSLINRILGEEKHIVSNIPGTTRDAVDSYIETEEGKFVLIDTAGLRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VE+    RT   +ENAD+ +L+
Sbjct: 238 SKIKEQVERYSAVRTLASIENADVCILM 265


>gi|253999419|ref|YP_003051482.1| GTP-binding protein EngA [Methylovorus sp. SIP3-4]
 gi|313201441|ref|YP_004040099.1| small GTP-binding protein [Methylovorus sp. MP688]
 gi|253986098|gb|ACT50955.1| small GTP-binding protein [Methylovorus sp. SIP3-4]
 gi|312440757|gb|ADQ84863.1| small GTP-binding protein [Methylovorus sp. MP688]
          Length = 523

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L NAL  ++  I  D PGTTRD + IDL+  G    I DTAG+R+ 
Sbjct: 179 KVAIVGRPNVGKSTLVNALLGQERVIAFDQPGTTRDSIHIDLERNGKHYTIIDTAGVRKR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +E A++ +L+
Sbjct: 239 GKVFEAIEKFSVIKTIQAIEEANVAILV 266



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 7/88 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISDTAGIR 278
           IV++G  N GKS+LFN L K   A+V D+PG TRD      I  D + +LV   DT G  
Sbjct: 5   IVLVGRPNVGKSTLFNRLTKSRDALVADLPGLTRDRHYGRGIGGD-KPFLV--VDTGGFE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLL 305
              D  + KE  K+T L ++ AD+++ +
Sbjct: 62  PLVDSGILKEMAKQTLLAIDEADVVIFM 89


>gi|32034718|ref|ZP_00134849.1| COG1160: Predicted GTPases [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126207887|ref|YP_001053112.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae L20]
 gi|307260878|ref|ZP_07542564.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|166224300|sp|A3MZC1|DER_ACTP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|126096679|gb|ABN73507.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|306869445|gb|EFN01236.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 506

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 278

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 279 GKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVV 335

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + +K   +   +K  
Sbjct: 336 NKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTS 395

Query: 371 FSI 373
            S+
Sbjct: 396 TSM 398



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFL 88


>gi|153833535|ref|ZP_01986202.1| GTP-binding protein EngA [Vibrio harveyi HY01]
 gi|148870186|gb|EDL69127.1| GTP-binding protein EngA [Vibrio harveyi HY01]
          Length = 498

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 211 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 270

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 271 GRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 306



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       L E +   + DT GI  T
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           ++ VE +  +++   ++ AD++L L
Sbjct: 65  EEGVETKMAEQSLAAIDEADVVLFL 89


>gi|118443488|ref|YP_878327.1| GTP-binding protein EngA [Clostridium novyi NT]
 gi|166224330|sp|A0Q125|DER_CLONN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|118133944|gb|ABK60988.1| GTP-binding protein engA [Clostridium novyi NT]
          Length = 438

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D+PG TRD +  + +       I DT GI  E 
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAEAEWLNNNFTIIDTGGIEPEN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI+  +  ++  L +E AD++L +
Sbjct: 66  DDIIVAQMRRQAQLAIEMADVVLFI 90



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N +  ++  IV++IPGTTRD +   ++ E     + DTAG+R  
Sbjct: 178 RIAMIGRPNVGKSSLINKILGEEKHIVSNIPGTTRDAVDSYVETEEGKFVLIDTAGLRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VE+    RT   +ENAD+ +L+
Sbjct: 238 SKIKEQVERYSAVRTLASIENADVCILM 265


>gi|51597153|ref|YP_071344.1| GTP-binding protein EngA [Yersinia pseudotuberculosis IP 32953]
 gi|186896248|ref|YP_001873360.1| GTP-binding protein EngA [Yersinia pseudotuberculosis PB1/+]
 gi|81825749|sp|Q668A3|DER_YERPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238691441|sp|B2K9P6|DER_YERPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|51590435|emb|CAH22075.1| putative GTP-binding protein [Yersinia pseudotuberculosis IP 32953]
 gi|186699274|gb|ACC89903.1| small GTP-binding protein [Yersinia pseudotuberculosis PB1/+]
          Length = 495

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324
           D VE +   ++ L +E AD++L +               + + S+++ +F      D I 
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358
             T + D YS    E  H I++  G G+ +LI  +
Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDDREYILIDTAGVRKR 268

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +T   +E+++++LL+  I+++  IS
Sbjct: 269 GKITETVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 304


>gi|303249765|ref|ZP_07335969.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307251953|ref|ZP_07533854.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307256448|ref|ZP_07538230.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|302651332|gb|EFL81484.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860645|gb|EFM92657.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306865078|gb|EFM96979.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 506

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 278

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323
             +   VEK  + +T   +++A+++LL    +E  S +++S    + FI           
Sbjct: 279 GKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVV 335

Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             + G   D+      E D           H IS+  G G+  L + +K   +   +K  
Sbjct: 336 NKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTS 395

Query: 371 FSI 373
            S+
Sbjct: 396 TSM 398



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFL 88


>gi|220904769|ref|YP_002480081.1| small GTP-binding protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869068|gb|ACL49403.1| small GTP-binding protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 408

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 22/149 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           I +LG  N GKSSL NAL  +DVAIV+  PGTT D +  T+++   G +V + DTAG   
Sbjct: 12  IAVLGRCNVGKSSLLNALCGQDVAIVSATPGTTADPVEKTLEMAPLGPVVFL-DTAG--- 67

Query: 280 TDDIVEKEGIK--RTFLEVENADLILLLKEINS----KKEISF---PKNIDFIFIGTKSD 330
           TDD  E  G++  R+   +  ADL LL+ +  S    +++++     + I F+ +  K+D
Sbjct: 68  TDDTGELGGLRAGRSLAAMTRADLALLVTDSPSWGPYERDLAARLKEQEIPFVAVRNKAD 127

Query: 331 LYSTYTEEY---DHL----ISSFTGEGLE 352
              +        D +    +S+++G+GL+
Sbjct: 128 QPGSMARPQGLSDEVPFVCVSAYSGQGLD 156


>gi|156973384|ref|YP_001444291.1| GTP-binding protein EngA [Vibrio harveyi ATCC BAA-1116]
 gi|166225933|sp|A7MZE5|DER_VIBHB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|156524978|gb|ABU70064.1| hypothetical protein VIBHAR_01071 [Vibrio harveyi ATCC BAA-1116]
          Length = 498

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 211 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 270

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 271 GRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 306



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       L E +   + DT GI  T
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           ++ VE +  +++   ++ AD++L L
Sbjct: 65  EEGVETKMAEQSLAAIDEADVVLFL 89


>gi|332284650|ref|YP_004416561.1| GTP-binding protein [Pusillimonas sp. T7-7]
 gi|330428603|gb|AEC19937.1| GTP-binding protein [Pusillimonas sp. T7-7]
          Length = 478

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 10/144 (6%)

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           D    +E D     ++ VL D      D++   +  +  E + +  K+ I+G  N GKS+
Sbjct: 173 DAGTDDEPDFMPDDAEPVLAD-----GDLAEQDTNQEPEEPVSHRIKLAIVGRPNVGKST 227

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKR 291
           L N L  +D  I  D+PGTTRD + I+ +  G    + DTAG+R    +   +EK  + +
Sbjct: 228 LINTLLGEDRVIAFDMPGTTRDAIEIEFERNGVSYTLIDTAGLRRRGKVFEAIEKFSVIK 287

Query: 292 TFLEVENADLILLLKEINSKKEIS 315
           T   +E  ++++L+  ++++ EIS
Sbjct: 288 TLQAIEACNVVVLM--LDAQTEIS 309



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 28/170 (16%)

Query: 219 GYKIVI--LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
            YK V+  +G +N GKS+LFN + +   A+V D  G TRD    +  +  +     DT G
Sbjct: 5   AYKPVVALVGRANVGKSTLFNRITRSRAALVADFSGLTRDRHYGEGRVGEHPFIAVDTGG 64

Query: 277 IRETDDIVEKEGI-----KRTFLEVENADLILLLKEINS-----KKEIS--FPKNIDFIF 324
                + V K+GI     ++T   +  +D+++ L +  +       EI+    K+   +F
Sbjct: 65  F----EPVAKDGILLEMARQTQQAIAESDVVIFLVDARAGVNAHDHEIARLLRKSGQRVF 120

Query: 325 IGTKSD---LYSTYTEEYD-------HLISSFTGEGLEELINKIKSILSN 364
           +         Y + T E+        H IS+  G+G+ ELI +  S + +
Sbjct: 121 LAVNKAEGMRYGSATAEFHELGLGEPHAISASHGDGVVELIERALSYMDD 170


>gi|153953981|ref|YP_001394746.1| GTP-binding protein EngA [Clostridium kluyveri DSM 555]
 gi|219854595|ref|YP_002471717.1| hypothetical protein CKR_1252 [Clostridium kluyveri NBRC 12016]
 gi|189037142|sp|A5N7W7|DER_CLOK5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783148|sp|B9E1C8|DER_CLOK1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|146346862|gb|EDK33398.1| Hypothetical protein CKL_1356 [Clostridium kluyveri DSM 555]
 gi|219568319|dbj|BAH06303.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 438

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI  +G  N GKSSL N L  ++  IV+DIPGTTRD +   L+ +     + DTAG+R  
Sbjct: 178 KIAFIGKPNVGKSSLINKLLGEERVIVSDIPGTTRDAIDSYLETDEGKFLLIDTAGVRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + RT+  VE AD+ +L+
Sbjct: 238 SKVKEEIEKYSVIRTYTAVERADVCILM 265



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K ++IV D PG TRD +    +   Y   I DT GI  E 
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRISIVEDTPGVTRDRVYAQAEWLNYNFTIIDTGGIEPEN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +D++  +  ++  + +E A++I+ +
Sbjct: 66  NDVIISKMRRQAQVAIETANVIIFI 90


>gi|297538116|ref|YP_003673885.1| ribosome-associated GTPase EngA [Methylotenera sp. 301]
 gi|297257463|gb|ADI29308.1| ribosome-associated GTPase EngA [Methylotenera sp. 301]
          Length = 484

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L NAL  ++  I  D PGTTRD ++IDL+  G    + DTAG+R+ 
Sbjct: 181 KVAIVGRPNVGKSTLVNALLGEERVIAFDEPGTTRDSISIDLEKNGKHYTLIDTAGVRKR 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +E A++++L+
Sbjct: 241 GRVLEAIEKFSVIKTIQSIEEANVVILV 268



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISDTAGIR 278
           +V++G  N GKS+LFN L K   A+V D+PG TRD      I    + YLV   DT G  
Sbjct: 5   VVLVGRPNVGKSTLFNRLTKSRDALVADLPGLTRDRHYGRGIGAS-QPYLV--VDTGGFE 61

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
             TD  + K    +T L ++ AD+I+ L
Sbjct: 62  PNTDSGILKAMAVQTLLAIDEADVIIFL 89


>gi|291519504|emb|CBK74725.1| ribosome-associated GTPase EngA [Butyrivibrio fibrisolvens 16/4]
          Length = 441

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+    Y   + DT GI  +T
Sbjct: 6   VAIVGRPNVGKSTLFNALAGERISIVKDTPGVTRDRIYADVSWLNYDFTMIDTGGIEPDT 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           +DI+  +  ++  + ++ AD+I+ L ++
Sbjct: 66  NDIILSQMREQAQIAIDTADVIIFLVDV 93



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N L  ++  IV+DI GTTRD +   +          DTAG+R  
Sbjct: 179 KIAVIGKPNVGKSSLINKLCGEERVIVSDIAGTTRDAVDTRVRYNHKDYIFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  I R    VE AD+++++
Sbjct: 239 SKIKEDLERYSIVRAVASVEKADVVIIM 266


>gi|212702039|ref|ZP_03310167.1| hypothetical protein DESPIG_00041 [Desulfovibrio piger ATCC 29098]
 gi|212674554|gb|EEB35037.1| hypothetical protein DESPIG_00041 [Desulfovibrio piger ATCC 29098]
          Length = 382

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ +LG  NAGKSS+ NALA ++  IV+D+ GTTRD + +  + +G      DTAG+R  
Sbjct: 121 RLAMLGRPNAGKSSMINALAGEERMIVSDVAGTTRDSVDVRFERDGQDYVFVDTAGVRRR 180

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILL 304
            +  DIVEK  +         AD+ LL
Sbjct: 181 TKITDIVEKYSVNAALKSTTKADVTLL 207


>gi|251788752|ref|YP_003003473.1| GTP-binding protein EngA [Dickeya zeae Ech1591]
 gi|247537373|gb|ACT05994.1| small GTP-binding protein [Dickeya zeae Ech1591]
          Length = 497

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 28/170 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324
           D VE    +++ L +E AD++L L               + + ++++ +F     ID I 
Sbjct: 65  DGVETRMAEQSLLAIEEADIVLFLVDARDGLMPADHAIAQHLRTREKDTFLVANKIDGID 124

Query: 325 IGT-KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           I T  +D YS    E  + I++  G G+  L+ K+          LPF++
Sbjct: 125 IDTGTADFYSLGLGEV-YPIAASHGRGVTALLEKV---------LLPFAV 164



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 211 KLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDGRDYVLIDTAGVRKR 270

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 271 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 306


>gi|238897953|ref|YP_002923633.1| putative GTP-binding protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259645880|sp|C4K4J2|DER_HAMD5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|229465711|gb|ACQ67485.1| putative GTP-binding protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 496

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 27/166 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V DIPGTTRD + I L          DTAG+R++
Sbjct: 211 KLAIVGRPNVGKSTLVNHILAQDRMLVYDIPGTTRDSIYIPLIRNNREYIFIDTAGVRKS 270

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKS 329
             I   VE+  + +T   +ENA+++LL+ + N   S +++S    I       +    K 
Sbjct: 271 AKIKEKVERFSVIKTLKAIENANVVLLVIDANEGVSDQDLSLLSFILNSGRSLVITVNKW 330

Query: 330 DLYSTYTEEY----------------DHLISSFTGEGLEELINKIK 359
           D  S+   +                  H IS+  G G+E L   IK
Sbjct: 331 DAISSEKRKQIKNSLDLRLGFMDFARTHFISALHGSGVENLFKSIK 376



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+ FN L +   A+V D PG TRD      ++E +   I DT GI   +
Sbjct: 5   IALIGRPNVGKSTFFNRLTQTANALVADFPGLTRDRQYGHAEIENHKFIIIDTGGINGIE 64

Query: 282 DI--VEKEGIKRTFLEVENADLILLL 305
            I  ++K    ++FL +E AD++L +
Sbjct: 65  GIENIQKHMTHQSFLAIEEADVVLFI 90


>gi|78045106|ref|YP_360738.1| GTP-binding protein EngA [Carboxydothermus hydrogenoformans Z-2901]
 gi|123575819|sp|Q3AAU6|DER_CARHZ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|77997221|gb|ABB16120.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 440

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL NAL  ++  +V+DIPGTTRD +   +  +G    + DTAG+R  
Sbjct: 178 KIAVVGRPNVGKSSLVNALLGEERVVVSDIPGTTRDAIDTPMWYQGKPYLLIDTAGMRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  + R+   +  AD+ LL+
Sbjct: 238 SRIEEDLERYSVNRSIKAIRRADVALLV 265



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD L  + + +G +  + DT G+  ++
Sbjct: 6   VAIVGRPNVGKSTLFNRIIGERIAIVEDTPGVTRDRLYSEAEWQGKVFDLIDTGGLEFSE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D++  +  ++    +  ADLIL +
Sbjct: 66  DLITTKVREQIEKAINEADLILFV 89


>gi|311278558|ref|YP_003940789.1| ribosome-associated GTPase EngA [Enterobacter cloacae SCF1]
 gi|308747753|gb|ADO47505.1| ribosome-associated GTPase EngA [Enterobacter cloacae SCF1]
          Length = 492

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 206 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 265

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D+VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 266 GKITDVVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 301



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L +
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFM 88


>gi|221632763|ref|YP_002521985.1| GTP-binding protein EngA [Thermomicrobium roseum DSM 5159]
 gi|254783175|sp|B9KZ43|DER_THERP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|221155859|gb|ACM04986.1| ribosome-associated GTPase EngA [Thermomicrobium roseum DSM 5159]
          Length = 460

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L NA+  +   IV+ IPGTTRD +  +L  +G  + + DTAGIR  
Sbjct: 185 KIAIVGRPNVGKSALLNAILGQPRQIVSPIPGTTRDAVDTELVWKGQPIVLIDTAGIRRP 244

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  I R    +E +D+ +L+
Sbjct: 245 GRIERGIERYSILRAERAIERSDVAILV 272



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           ++ I+G  N GKS+LFN L ++  AIV ++PGTTRD +   ++       + DT G+
Sbjct: 5   QVAIVGRPNVGKSTLFNRLLRQRRAIVEEVPGTTRDRIYGIVEWNDLRFGLFDTGGL 61


>gi|15644195|ref|NP_229245.1| GTP-binding protein EngA [Thermotoga maritima MSB8]
 gi|8134441|sp|Q9X1F8|DER_THEMA RecName: Full=GTPase Der; Short=TmDer; AltName: Full=GTP-binding
           protein EngA
 gi|4982010|gb|AAD36514.1|AE001796_6 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 439

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 4/94 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I +  K+ I+G  N GKS+LFNA+  K+ A+V+ IPGTTRD +  ++ ++G      DTA
Sbjct: 177 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 236

Query: 276 GIRETDDI----VEKEGIKRTFLEVENADLILLL 305
           G+R    +    VEK    R    +E AD+++++
Sbjct: 237 GLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIV 270



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           ++I+G  N GKS+LFN L KK  AIV D  G TRD +   ++  G   K+ DT G+ +  
Sbjct: 4   VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            DI+ ++  + T   +  ADL+L +  ++ K+ I+
Sbjct: 64  QDIISQKMKEVTLNMIREADLVLFV--VDGKRGIT 96


>gi|323435972|ref|ZP_01049346.2| GTP-binding protein EngA [Dokdonia donghaensis MED134]
 gi|321496287|gb|EAQ39318.2| GTP-binding protein EngA [Dokdonia donghaensis MED134]
          Length = 450

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  ++  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 192 RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDAMDTKYNRYGFEFNLVDTAGIRRK 251

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E+AD++LL+
Sbjct: 252 AKVKEDLEFYSVMRSVRAIEHADVVLLV 279



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      D  G    + DT G +  +
Sbjct: 20  VAIVGRPNVGKSTFFNRLVQRREAIVDAVSGVTRDRHYGKTDWNGREFTVIDTGGYVVGS 79

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           DDI E E  K+  L ++ AD I+ + ++
Sbjct: 80  DDIFEAEIDKQVELAIDEADAIIFMVDV 107


>gi|91775967|ref|YP_545723.1| small GTP-binding protein domain-containing protein
           [Methylobacillus flagellatus KT]
 gi|91709954|gb|ABE49882.1| Small GTP-binding protein domain [Methylobacillus flagellatus KT]
          Length = 499

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L NAL  ++  I  D PGTTRD + +DL+  G    I DTAG+R  
Sbjct: 180 KVAIVGRPNVGKSTLVNALLGEERVIAFDQPGTTRDSIYLDLERNGKRYTIIDTAGVRRR 239

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VEK  + +T   +E A++ +L+
Sbjct: 240 GKVFEAVEKFSVIKTMQAIEEANVAILV 267



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 5/87 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID--LDLEGYLVKISDTAGIRE 279
           IV++G  N GKS+LFN L K   A+V D+PG TRD       +  + YLV   DT G   
Sbjct: 6   IVLVGRPNVGKSTLFNRLTKTRDALVADLPGLTRDRHYGRGVVGSKPYLV--VDTGGFEP 63

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
             D  + KE  ++T L ++ AD+++ L
Sbjct: 64  LVDSGILKEMARQTLLAIDEADVVIFL 90


>gi|320157270|ref|YP_004189649.1| GTP-binding protein EngA [Vibrio vulnificus MO6-24/O]
 gi|319932582|gb|ADV87446.1| GTP-binding protein EngA [Vibrio vulnificus MO6-24/O]
          Length = 496

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 209 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 268

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  + VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 269 GKVHETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 304



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       +  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   +  AD++L +
Sbjct: 65  EGVETKMAEQSLAAIREADVVLFM 88


>gi|46447114|ref|YP_008479.1| hypothetical protein pc1480 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81697623|sp|Q6MB45|DER_PARUW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|46400755|emb|CAF24204.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 487

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G +N GKSSL N L  +D  IV+ IPGTTRD + I    +     + DTAGIR  
Sbjct: 179 KVAIVGRANVGKSSLVNYLLDEDRCIVSPIPGTTRDSVDISFTHKDECYTLIDTAGIRRK 238

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN 309
               ++V+K    RT   +E ADL +L+ ++ 
Sbjct: 239 RAEHEVVDKFAAIRTERAIERADLCVLMLDVQ 270



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+LFN + K+ +AIV +  G TRD L  + +L G   ++ DT GI   
Sbjct: 6   KLAIVGRPNVGKSALFNRICKQKIAIVDEAEGITRDRLYAEGELFGLHFQVIDTGGINAR 65

Query: 281 DDIVEKEGIKRTF-LEVENADLIL 303
              V  E IKR   + +E AD I+
Sbjct: 66  SKEVFNEEIKRQAEIAIEEADTIV 89


>gi|123441422|ref|YP_001005409.1| GTP-binding protein EngA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166225934|sp|A1JKS6|DER_YERE8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|122088383|emb|CAL11174.1| putative GTP-binding protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 494

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324
           D VE +   ++ L +E AD++L +               + + S+++ +F      D I 
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358
             T + D YS    E  H I++  G G+ +LI  +
Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKR 267

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +T   +E+++++LL+  I+++  IS
Sbjct: 268 GKITEAVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 303


>gi|37197696|dbj|BAC93534.1| predicted GTP-binding protein [Vibrio vulnificus YJ016]
          Length = 511

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 224 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 283

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  + VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 284 GKVHETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 319



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       +  +   + DT GI  ++
Sbjct: 20  VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGIDGSE 79

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   +  AD++L +
Sbjct: 80  EGVETKMAEQSLAAIREADVVLFM 103


>gi|148270478|ref|YP_001244938.1| GTP-binding protein EngA [Thermotoga petrophila RKU-1]
 gi|166225931|sp|A5IMD9|DER_THEP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|147736022|gb|ABQ47362.1| small GTP-binding protein [Thermotoga petrophila RKU-1]
          Length = 439

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 4/94 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I +  K+ I+G  N GKS+LFNA+  K+ A+V+ IPGTTRD +  ++ ++G      DTA
Sbjct: 177 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDEEVFIDGRKYVFVDTA 236

Query: 276 GIRETDDI----VEKEGIKRTFLEVENADLILLL 305
           G+R    +    VEK    R    +E AD+++++
Sbjct: 237 GLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIV 270



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           ++I+G  N GKS+LFN L +K  AIV D  G TRD +   ++  G   K+ DT G+ +  
Sbjct: 4   VLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLY 332
            DI+ ++  + T   +  ADL+L +        KE  S  +     N+D I +  K++  
Sbjct: 64  QDIISQKMKEVTLNMIREADLVLFVVDGKKGITKEDESLADFLRKSNVDTILVANKTENL 123

Query: 333 STYTEE 338
             +  E
Sbjct: 124 REFERE 129


>gi|161486654|ref|NP_933563.2| GTP-binding protein EngA [Vibrio vulnificus YJ016]
 gi|41016999|sp|Q7MNE7|DER_VIBVY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
          Length = 496

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 209 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 268

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  + VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 269 GKVHETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 304



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       +  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   +  AD++L +
Sbjct: 65  EGVETKMAEQSLAAIREADVVLFM 88


>gi|28373695|pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
           Switch Protein Containing Two Gtpase Domains
          Length = 439

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 4/94 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I +  K+ I+G  N GKS+LFNA+  K+ A+V+ IPGTTRD +  ++ ++G      DTA
Sbjct: 177 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 236

Query: 276 GIRETDDI----VEKEGIKRTFLEVENADLILLL 305
           G+R    +    VEK    R    +E AD+++++
Sbjct: 237 GLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIV 270



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           ++I+G  N GKS+LFN L KK  AIV D  G TRD +   ++  G   K+ DT G+ +  
Sbjct: 4   VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            DI+ ++  + T   +  ADL+L +  ++ K+ I+
Sbjct: 64  QDIISQKXKEVTLNXIREADLVLFV--VDGKRGIT 96


>gi|269140141|ref|YP_003296842.1| GTP-binding protein [Edwardsiella tarda EIB202]
 gi|267985802|gb|ACY85631.1| GTP-binding protein [Edwardsiella tarda EIB202]
 gi|304559975|gb|ADM42639.1| GTP-binding protein EngA [Edwardsiella tarda FL6-60]
          Length = 494

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 63/103 (61%), Gaps = 5/103 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I    KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTA
Sbjct: 203 INQPIKIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTA 262

Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           G+R   +  D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 263 GVRKRGKVTDTVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 303



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ G+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVNGHEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ + +E AD++L L
Sbjct: 65  NGVETHMAEQSLMAIEEADIVLFL 88


>gi|222100021|ref|YP_002534589.1| GTP-binding protein engA [Thermotoga neapolitana DSM 4359]
 gi|254783174|sp|B9K8E0|DER_THENN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|221572411|gb|ACM23223.1| GTP-binding protein engA [Thermotoga neapolitana DSM 4359]
          Length = 439

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 36/194 (18%)

Query: 127 EAESLAD----------LISSETEMQRRLSMEGMSGELSSL-YGQWIDKLTHIRSFIEAD 175
           E ESLAD          L++++TE QRR   E +  EL  L +G  I     + +    +
Sbjct: 98  EDESLADFLRKSGVDVILVANKTENQRRFERE-IKPELYRLGFGDPI----PVSAEHSIN 152

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LD   E+ +Q    K +    L  K +I+  I             KI I+G  N GKS+L
Sbjct: 153 LDTLMEKIIQKLEEKGL---DLETKPEITEAI-------------KIAIVGRPNVGKSTL 196

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI----VEKEGIKR 291
           FNA+  K+ A+V+ IPGTTRD +  ++ ++G      DTAG+R    I    VE+    R
Sbjct: 197 FNAILNKERALVSPIPGTTRDPVDDEVFIDGKKYIFVDTAGLRRKSRIEPKTVERYSTYR 256

Query: 292 TFLEVENADLILLL 305
               +E AD+ +++
Sbjct: 257 VVESIERADVAVIV 270



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           ++I+G  N GKS+LFN L +K  AIV D  G TRD +   ++  G   ++ DT G+ +  
Sbjct: 4   VLIVGKPNVGKSTLFNKLVRKRKAIVEDEEGVTRDPVQDTVEWYGKTFRLVDTCGVFDNP 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D++ K+  + T   +  ADL+L +
Sbjct: 64  QDVISKKMKEVTLNMIREADLVLFV 88


>gi|307243742|ref|ZP_07525882.1| hydrogenase maturation GTP-binding protein HydF [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492951|gb|EFM64964.1| hydrogenase maturation GTP-binding protein HydF [Peptostreptococcus
           stomatis DSM 17678]
          Length = 399

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 61/89 (68%), Gaps = 2/89 (2%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           I N   IV++G+ N+GKSSLFN +  +D++IV+D  GTT D +  +++L GY  V+I DT
Sbjct: 6   IANRKTIVLVGNRNSGKSSLFNLILGQDMSIVSDYAGTTTDPVGRNMELIGYGPVRIIDT 65

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
           AG+ +  D+ +   +++T LE+  ADL++
Sbjct: 66  AGLDDLGDLGQMR-VRKTQLEIGEADLVV 93


>gi|254478784|ref|ZP_05092152.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
 gi|214035296|gb|EEB76002.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
          Length = 439

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N +  ++  IV+DIPGTTRD +      +G    + DTAGIR  
Sbjct: 178 KIAVIGRPNVGKSSLVNRILGEERVIVSDIPGTTRDAIDTPFTKDGRNYILIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  + R    +E AD+ LL+
Sbjct: 238 SRISESIERYSVLRALAAIERADICLLM 265



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+LFN + K+ ++IV DIPG TRD +  + +       + DT G+  + 
Sbjct: 6   VAIVGRPNVGKSTLFNRILKRRISIVEDIPGVTRDRIYGNAEWLNRKFILVDTGGLDPDP 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D++  +   +    +E ADLIL +
Sbjct: 66  KDVIFSKVKLQVEAAIEAADLILFV 90


>gi|20808046|ref|NP_623217.1| GTP-binding protein EngA [Thermoanaerobacter tengcongensis MB4]
 gi|26006716|sp|Q8R9J1|DER_THETN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|20516626|gb|AAM24821.1| predicted GTPases [Thermoanaerobacter tengcongensis MB4]
          Length = 439

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N +  ++  IV+DIPGTTRD +      +G    + DTAGIR  
Sbjct: 178 KIAVIGRPNVGKSSLVNRILGEERVIVSDIPGTTRDAIDTPFTKDGRNYILIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  + R    +E AD+ LL+
Sbjct: 238 SRISESIERYSVLRALAAIERADICLLM 265



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+LFN + K+ ++IV DIPG TRD +  + +       + DT G+  + 
Sbjct: 6   VAIVGRPNVGKSTLFNRILKRRISIVEDIPGVTRDRIYGNAEWLNRKFILVDTGGLDPDP 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D++  +   +    +E ADLIL +
Sbjct: 66  KDVIFSKVKLQVEAAIEAADLILFV 90


>gi|323499818|ref|ZP_08104777.1| GTP-binding protein Der [Vibrio sinaloensis DSM 21326]
 gi|323315059|gb|EGA68111.1| GTP-binding protein Der [Vibrio sinaloensis DSM 21326]
          Length = 494

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 208 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 267

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   VE+A++++L+  I++++ IS
Sbjct: 268 TRINETVEKFSVVKTLKAVEDANVVMLV--IDARENIS 303



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFM 88


>gi|254514003|ref|ZP_05126064.1| GTP-binding protein EngA [gamma proteobacterium NOR5-3]
 gi|219676246|gb|EED32611.1| GTP-binding protein EngA [gamma proteobacterium NOR5-3]
          Length = 474

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + G ++ ++G  N GKS+L N +  +D  +V D PGTTRD + I+   EG    + DTAG
Sbjct: 175 QGGTRVAVVGRPNVGKSTLVNRILGEDRVVVYDQPGTTRDSVYINFSREGRPYTLIDTAG 234

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R   ++   VEK  I +T   + +A++++LL
Sbjct: 235 VRRRKNVREAVEKFSIIKTLSAISDANVVVLL 266



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 75/157 (47%), Gaps = 23/157 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V ++ G TRD    +   E     + DT G+   +
Sbjct: 5   IALVGRPNVGKSTLFNQLTRSRDALVANLSGLTRDRKYGEGRSEDRAFIVIDTGGVSGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI-FIGTKSDLYSTYTEEYD 340
           + ++    +++ L ++ AD++LLL  +++K  ++ P ++  + ++  KS  +     + D
Sbjct: 65  EGIDAAMAEQSLLAIDEADVVLLL--VDAKDGLN-PVDVQLVQYLRQKSRDFHLVVNKID 121

Query: 341 -------------------HLISSFTGEGLEELINKI 358
                              H I++  G G+ ++I  +
Sbjct: 122 GRDPDVAISDFHSLGIASMHAIAASHGRGVRQMIETV 158


>gi|32186993|gb|AAP73740.1| EngA [Escherichia coli]
          Length = 369

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 83  KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 142

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 143 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 178


>gi|90417497|ref|ZP_01225420.1| hypothetical protein GB2207_07462 [marine gamma proteobacterium
           HTCC2207]
 gi|90330738|gb|EAS46017.1| hypothetical protein GB2207_07462 [marine gamma proteobacterium
           HTCC2207]
          Length = 467

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG +I ++G  N GKS+L N L  +D  +V D  GTTRD + ID +  G    + DTAGI
Sbjct: 174 NGIRIGVVGRPNVGKSTLVNRLLGEDRVVVYDEAGTTRDSVYIDYERHGKKYTLIDTAGI 233

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R+  +I   +EK  I +T   +++A++++L+
Sbjct: 234 RKRKNIKLAIEKFSIVKTLQAIDDANVVVLM 264



 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V +  G TRD    D ++      + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVANYSGLTRDRKYGDGEMHDRRFMVIDTGGISGEE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + ++    +++ L ++ AD++L + +  S
Sbjct: 65  EGIDVGMAEQSLLAMDEADIVLFIVDCRS 93


>gi|83945266|ref|ZP_00957615.1| GTP-binding protein EngA [Oceanicaulis alexandrii HTCC2633]
 gi|83851436|gb|EAP89292.1| GTP-binding protein EngA [Oceanicaulis alexandrii HTCC2633]
          Length = 459

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 85/173 (49%), Gaps = 29/173 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ + G  N GKS+L NAL  +D  I     G TRD + ++ + +G  V++ DTAG+R  
Sbjct: 193 RLAVAGRPNVGKSTLINALIGEDRLITGPEAGLTRDAIAVEWEWDGQRVRLHDTAGLRKR 252

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKS 329
            + DD +E+     T   ++ A+++LLL +      K++++    +       + + TK 
Sbjct: 253 GKVDDRLERMSAADTLRAIKFAEIVLLLVDAERPFEKQDLTIADRVVTEGRGLVVLITKW 312

Query: 330 DL-------YSTYTEEYDHL-----------ISSFTGEGLEELINKIKSILSN 364
           DL        +   EE++ L           ISS +G GLE+++  + ++  N
Sbjct: 313 DLIEDKQAKLAELREEFERLLPQIKGAPLIPISSISGRGLEKIMPAVSALHKN 365



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN LA K +AIV D PG TRD       +    +++ DTAG  +  
Sbjct: 8   LAIVGRPNVGKSTLFNRLAGKPLAIVDDRPGVTRDRREARGRIGDLELRLVDTAGYEDDK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +E     +T   ++ AD+ + L
Sbjct: 68  AGIEARMRAQTEAALDEADVCVFL 91


>gi|284006778|emb|CBA72042.1| GTP-binding protein [Arsenophonus nasoniae]
          Length = 493

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEERVVVYDLPGTTRDSIYIPMERDGCEYVLIDTAGVRKR 267

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 268 GKITETVEKFSVIKTLQSIEDANVVLLV--IDARQGIS 303



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD      +  G    I DT GI  ++
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGKAEFAGQEFIIIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E     ++ L +E AD++  + ++ S
Sbjct: 65  EGIENHMASQSLLAIEEADIVFFMVDVRS 93


>gi|190149696|ref|YP_001968221.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263004|ref|ZP_07544626.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|238692380|sp|B3H0R7|DER_ACTP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189914827|gb|ACE61079.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871630|gb|EFN03352.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 506

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 278

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +++A+++LL   I++++ IS
Sbjct: 279 GKVNLAVEKFSVIKTLQAIQDANVVLL--TIDAREGIS 314



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFL 88


>gi|154249913|ref|YP_001410738.1| GTP-binding protein EngA [Fervidobacterium nodosum Rt17-B1]
 gi|154153849|gb|ABS61081.1| small GTP-binding protein [Fervidobacterium nodosum Rt17-B1]
          Length = 444

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 60/93 (64%), Gaps = 7/93 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTA 275
           N  ++ ++G  NAGKSSLFN + K++ A+VT I GTTRD++   + ++ + YL    DTA
Sbjct: 188 NIIRVTLVGKPNAGKSSLFNMIVKEERALVTPIAGTTRDIIDEIVQINNKNYL--FVDTA 245

Query: 276 GIRET---DDIVEKEGIKRTFLEVENADLILLL 305
           G+R+    +D +E+    RT   +E +D+++L+
Sbjct: 246 GLRKKSRIEDFIERVSTMRTIDSIERSDVVVLV 278



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-- 279
           ++++G SN GKS+LFN L  K  +IV D  GTTRD +   +       ++ DT GI E  
Sbjct: 14  VILVGKSNVGKSTLFNKLVGKRKSIVADENGTTRDAVVDRVVWYDKTFQLVDTCGIFEGK 73

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            D+I EK   + T   +  ADL++ +
Sbjct: 74  NDEIYEKSK-EITIKSLSEADLVIFV 98


>gi|27363891|ref|NP_759419.1| GTP-binding protein Der [Vibrio vulnificus CMCP6]
 gi|31340067|sp|Q8DF02|DER_VIBVU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|27360008|gb|AAO08946.1| GTP-binding protein EngA [Vibrio vulnificus CMCP6]
          Length = 496

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 209 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 268

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  + VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 269 GKVHETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 304



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       +  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   +  AD++L +
Sbjct: 65  EGVETKMAEQSLAAIREADVVLFM 88


>gi|304311812|ref|YP_003811410.1| GTP-binding protein [gamma proteobacterium HdN1]
 gi|301797545|emb|CBL45765.1| GTP-binding protein [gamma proteobacterium HdN1]
          Length = 474

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G +I ++G  N GKS+L N +  ++  +V D+PGTTRD + I  +  G    + DTAG+
Sbjct: 176 TGIRIAVVGRPNVGKSTLINRMLGEERVVVFDMPGTTRDSIYIPYERRGQKYTLIDTAGV 235

Query: 278 RE---TDDIVEKEGIKRTFLEVENADLILLL 305
           R+    D+ VEK  + +T   +E+A +++L+
Sbjct: 236 RKRGRVDEAVEKFSVIKTLQAIEDAHVVILV 266



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L K   AIV D+PG TRD    +  +  +   + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTKTRDAIVADMPGLTRDRKYGEARVGAHAFLVIDTGGITGEE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++    +++ L +E ADL+  +
Sbjct: 65  EGIDSLMAEQSMLAIEEADLVFFI 88


>gi|134299998|ref|YP_001113494.1| small GTP-binding protein [Desulfotomaculum reducens MI-1]
 gi|134052698|gb|ABO50669.1| iron-only hydrogenase maturation protein HydF [Desulfotomaculum
           reducens MI-1]
          Length = 409

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 2/94 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I I G  NAGKSSL NAL  +D+A+V++IPGTT D +   ++ L    V I DTAG
Sbjct: 8   NRLHIAIFGRRNAGKSSLINALTSQDIAVVSNIPGTTTDPVYKAMEILPVGPVVIIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           I ++ D+ E   +KR+   +  AD++LL+ +  S
Sbjct: 68  IDDSGDLGELR-VKRSMDVLNKADMVLLVIDAGS 100


>gi|332162632|ref|YP_004299209.1| GTP-binding protein EngA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606735|emb|CBY28233.1| GTP-binding protein EngA [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666862|gb|ADZ43506.1| GTP-binding protein EngA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859281|emb|CBX69631.1| GTP-binding protein engA [Yersinia enterocolitica W22703]
          Length = 494

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324
           D VE +   ++ L +E AD++L +               + + S+++ +F      D I 
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358
             T + D YS    E  H I++  G G+ +LI  +
Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKR 267

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +T   +E+++++LL+  I+++  IS
Sbjct: 268 GKITEAVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 303


>gi|307152641|ref|YP_003888025.1| ribosome-associated GTPase EngA [Cyanothece sp. PCC 7822]
 gi|306982869|gb|ADN14750.1| ribosome-associated GTPase EngA [Cyanothece sp. PCC 7822]
          Length = 452

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 4/97 (4%)

Query: 213 GEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           GE+  N   K+ I+G  N GKSSL NA   +  AIV+ I GTTRD +   ++  G   ++
Sbjct: 169 GEVPENDEIKVAIVGRPNVGKSSLLNAFTGQQRAIVSPISGTTRDTIDTIIERNGQHYRL 228

Query: 272 SDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
            DTAGIR   ++    E  GI R F  +  +D++L +
Sbjct: 229 IDTAGIRRKKNVEYGAEFFGINRAFKAIRRSDVVLFV 265



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LA    AIV D PG TRD        +    ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLAGDQQAIVHDEPGITRDRTYRPAFWQDRDFQVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|238788166|ref|ZP_04631961.1| GTP-binding protein engA [Yersinia frederiksenii ATCC 33641]
 gi|238723753|gb|EEQ15398.1| GTP-binding protein engA [Yersinia frederiksenii ATCC 33641]
          Length = 494

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324
           D VE +   ++ L +E AD++L +               + + S+++ +F      D I 
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358
             T + D YS    E  H I++  G G+ +LI  +
Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKR 267

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +T   +E+++++LL+  I+++  IS
Sbjct: 268 GKITEAVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 303


>gi|326560782|gb|EGE11149.1| GTP-binding protein EngA [Moraxella catarrhalis 103P14B1]
 gi|326563523|gb|EGE13782.1| GTP-binding protein EngA [Moraxella catarrhalis 12P80B1]
          Length = 472

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 61/97 (62%), Gaps = 5/97 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N L  +D  +V D+PGTTRD + I  + EG    + DTAG+R  
Sbjct: 181 KLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIYIPFEREGRSYVLIDTAGVRRR 240

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
              D+ VEK  + +T   +++A++++++  I++K+ I
Sbjct: 241 GRIDEKVEKFSVVKTLQAIKDANVVVVV--IDAKEGI 275



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L K   A+V D+ G TRD    D   E     + DT GI E D
Sbjct: 7   VALIGRPNVGKSTLFNQLTKSRQALVADLAGLTRDRQYGDAHFENKSFIVVDTGGIGEMD 66

Query: 282 D---IVEKEGIKRTFLEVENADLILLL 305
           D    ++     +++  +  AD+++ +
Sbjct: 67  DGSGNIDDYMATQSYTAIHEADIVVFV 93


>gi|160903053|ref|YP_001568634.1| small GTP-binding protein [Petrotoga mobilis SJ95]
 gi|160360697|gb|ABX32311.1| small GTP-binding protein [Petrotoga mobilis SJ95]
          Length = 460

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 34/184 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSLFN++   + AIV++IPGTTRD +   + +     +  DTAG+R+ 
Sbjct: 187 KVSIVGRPNVGKSSLFNSIIGSERAIVSEIPGTTRDAIDHLVTMGDNTFRFIDTAGMRKK 246

Query: 281 DDI----VEKEGIKRTFLEVENADLILLLKEINSKKEISFP----------KNIDFIFIG 326
             I    +E   I RT   +E +D+++L+  ++S + I+            +    I   
Sbjct: 247 STIHYASIEMFSISRTINAIEKSDVVILV--VDSTEGITHQDKSIIGIAEKRGKGTIIAF 304

Query: 327 TKSDLYSTYTEEYDHLISSFTGE------------------GLEELINKIKSILSNKFKK 368
            K DL S   +  +   + F  E                  G++ELI  IK +  ++ KK
Sbjct: 305 NKWDLVSNNHQRKEEFFNYFEKELYFVNYSPLVFTSAPKRWGIQELITAIKEVEKSRNKK 364

Query: 369 LPFS 372
           +P S
Sbjct: 365 IPTS 368



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           ++I+G  N GKS+LFN +  +  +IV D+PG TRD ++  +  +     + DT GI E  
Sbjct: 6   VLIIGKPNVGKSTLFNRMIGERKSIVHDMPGVTRDNVSSTIQWDDISFTLVDTCGIFEQP 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +D +E+   K  F  +++  L++ +
Sbjct: 66  EDNIEERQKKIIFESLKDVSLVIFV 90


>gi|206579507|ref|YP_002237139.1| GTP-binding protein EngA [Klebsiella pneumoniae 342]
 gi|206568565|gb|ACI10341.1| GTP-binding protein EngA [Klebsiella pneumoniae 342]
          Length = 498

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 212 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKR 271

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D+VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 272 GKITDVVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 307



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 11  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 70

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L +
Sbjct: 71  EGVETRMAEQSLLAIEEADVVLFM 94


>gi|83815424|ref|YP_444485.1| Era/ThdF family GTP-binding protein [Salinibacter ruber DSM 13855]
 gi|83756818|gb|ABC44931.1| GTP-binding protein, Era/ThdF family [Salinibacter ruber DSM 13855]
          Length = 505

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 14/142 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L     AIV D PG TRD +  + + +G+ + + DT G +  +
Sbjct: 76  VAIVGRPNVGKSTLFNRLTGSRQAIVEDTPGVTRDRVYGEAEWKGHTIPLVDTGGYVPRS 135

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           DD  E+   ++  + +E+AD+IL + ++ +      KEI+    P     + +  K+D  
Sbjct: 136 DDPYERAIREQAEIALEDADVILFVVDVTTGITEMDKEIATVLRPTETPVMVVANKAD-- 193

Query: 333 STYTEEYDHLISSFTGEGLEEL 354
               EE +   S F   GL E+
Sbjct: 194 ---NEEREWDASEFYQLGLGEV 212



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 28/191 (14%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           G   E  ++  ++ ++G  NAGKSSL NA    D AIVT+ PGTTRD +   +  EG  +
Sbjct: 236 GTEDEADKDRVQVSLVGKPNAGKSSLVNATLGFDRAIVTERPGTTRDTVQSVVQYEGRDL 295

Query: 270 KISDTAGI--RETDDIVEKEGIKRTFLEVENADLILL---------------LKEINSKK 312
            + DTAG+  R   D VE     R+   +   D+ +L               L E+N  K
Sbjct: 296 MLVDTAGMQKRSKADGVEFYATVRSERAIRAGDVCVLVLDATEELHKQDLSVLSEVNEHK 355

Query: 313 E--ISFPKNIDFIFIGTKS-DLYSTYTEEY----DHL----ISSFTGEGLEELINKIKSI 361
           +  +      D +     + D Y+ Y  +Y    DH+    +S+ T + + EL++K   +
Sbjct: 356 KGMVVAVNKWDLVPKDDGTMDQYTKYLRQYLGTLDHVPIVYVSAVTKQRVYELLDKALEV 415

Query: 362 LSNKFKKLPFS 372
              +  ++  S
Sbjct: 416 AEARATRVQTS 426


>gi|331673966|ref|ZP_08374729.1| ribosome-associated GTPase EngA [Escherichia coli TA280]
 gi|331069239|gb|EGI40631.1| ribosome-associated GTPase EngA [Escherichia coli TA280]
          Length = 503

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 277 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 312



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 18  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 78  DGVETRMAEQSLLAIEEADVVLFM 101


>gi|322434484|ref|YP_004216696.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX9]
 gi|321162211|gb|ADW67916.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX9]
          Length = 622

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 26/191 (13%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +Q   GE      K+ I+G  N GKS+L NAL + D AIV+ I GTTRD +   ++ +G+
Sbjct: 335 TQRTHGEYESRETKVAIIGRPNVGKSTLLNALTETDRAIVSPIAGTTRDAVDEIVEKKGH 394

Query: 268 LVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
           + +  DTAGIR   +T  + EK  +      +E AD+ LL+  I++++ ++   NID   
Sbjct: 395 IFRFVDTAGIRKKGKTKMMAEKLSVIMARKHLEAADVSLLV--IDAQEGVT---NIDANI 449

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
            G        Y  E        +G  +  +INK   + + +    P +    K +   + 
Sbjct: 450 GG--------YAHE--------SGRSVIIVINKWDLVTTARTDGKPAA--DQKAYAQQVR 491

Query: 385 QTVRYLEMASL 395
             ++YL+ A L
Sbjct: 492 DALKYLDYAPL 502



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G  N GKS+LFN L     +IV D PG TRD +  +++ +    ++ DT G+   D
Sbjct: 142 IAVCGRPNVGKSTLFNRLTGSRRSIVGDEPGITRDRIYGEIEWQNVKARLVDTGGVVPDD 201

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           + ++  E  ++  + ++ AD I+++  ++ + E++ P
Sbjct: 202 EALIPSEIFRQAQVALQEADAIVMV--VDGRTELASP 236


>gi|323491635|ref|ZP_08096814.1| GTP-binding protein Der [Vibrio brasiliensis LMG 20546]
 gi|323314211|gb|EGA67296.1| GTP-binding protein Der [Vibrio brasiliensis LMG 20546]
          Length = 494

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 266

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   VE+A++++L+  I++++ IS
Sbjct: 267 TRINETVEKFSVVKTLKAVEDANVVMLV--IDARENIS 302



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFM 88


>gi|194290002|ref|YP_002005909.1| gtp-binding protein enga [Cupriavidus taiwanensis LMG 19424]
 gi|238692737|sp|B3R1J8|DER_CUPTR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|193223837|emb|CAQ69846.1| Ribosome-Associated GTP-binding protein protein [Cupriavidus
           taiwanensis LMG 19424]
          Length = 447

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  ++  I  D+PGTTRD + ++ +  G    + DTAG+R
Sbjct: 180 GVKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAGLR 239

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 240 RRGKVFEAIEKFSVVKTLQSIADANVVILL--LDAQQDIS 277



 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN + +   A+V D+PG TRD
Sbjct: 5   IALVGRPNVGKSTLFNRMTRSRDALVADLPGLTRD 39


>gi|315288063|gb|EFU47463.1| ribosome-associated GTPase EngA [Escherichia coli MS 110-3]
 gi|324008519|gb|EGB77738.1| ribosome-associated GTPase EngA [Escherichia coli MS 57-2]
          Length = 499

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 14  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           D VE    +++ L +E AD++L + +  S
Sbjct: 74  DGVETRMAEQSLLAIEEADVVLFMVDARS 102


>gi|300898385|ref|ZP_07116728.1| ribosome-associated GTPase EngA [Escherichia coli MS 198-1]
 gi|300940238|ref|ZP_07154836.1| ribosome-associated GTPase EngA [Escherichia coli MS 21-1]
 gi|300357925|gb|EFJ73795.1| ribosome-associated GTPase EngA [Escherichia coli MS 198-1]
 gi|300454934|gb|EFK18427.1| ribosome-associated GTPase EngA [Escherichia coli MS 21-1]
          Length = 499

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 14  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 74  DGVETRMAEQSLLAIEEADVVLFM 97


>gi|294506233|ref|YP_003570291.1| GTPases [Salinibacter ruber M8]
 gi|294342561|emb|CBH23339.1| putative GTPases [Salinibacter ruber M8]
          Length = 505

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 14/142 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L     AIV D PG TRD +  + + +G+ + + DT G +  +
Sbjct: 76  VAIVGRPNVGKSTLFNRLTGSRQAIVEDTPGVTRDRVYGEAEWKGHTIPLVDTGGYVPRS 135

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           DD  E+   ++  + +E+AD+IL + ++ +      KEI+    P     + +  K+D  
Sbjct: 136 DDPYERAIREQAEIALEDADVILFVVDVTTGITEMDKEIATVLRPTETPVMVVANKAD-- 193

Query: 333 STYTEEYDHLISSFTGEGLEEL 354
               EE +   S F   GL E+
Sbjct: 194 ---NEEREWDASEFYQLGLGEV 212



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 28/180 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--R 278
           ++ ++G  NAGKSSL NA    D AIVT+ PGTTRD +   +  EG  + + DTAG+  R
Sbjct: 247 QVSLVGKPNAGKSSLVNATLGFDRAIVTERPGTTRDTVQSVVQYEGRDLMLVDTAGMQKR 306

Query: 279 ETDDIVEKEGIKRTFLEVENADLILL---------------LKEINSKKE--ISFPKNID 321
              D VE     R+   +   D+ +L               L E+N  K+  +      D
Sbjct: 307 SKADGVEFYATVRSERAIRAGDVCVLVLDATEELHKQDLSVLSEVNEHKKGMVVAVNKWD 366

Query: 322 FIFIGTKS-DLYSTYTEEY----DHL----ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            +     + D Y+ Y  +Y    DH+    +S+ T + + EL++K   +   +  ++  S
Sbjct: 367 LVPKDDGTMDQYTKYLRQYLGTLDHVPIVYVSAVTKQRVYELLDKALEVAEARATRVQTS 426


>gi|293410925|ref|ZP_06654501.1| ribosome-associated GTPase EngA [Escherichia coli B354]
 gi|291471393|gb|EFF13877.1| ribosome-associated GTPase EngA [Escherichia coli B354]
          Length = 499

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 14  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L +
Sbjct: 74  NGVETRMAEQSLLAIEEADVVLFM 97


>gi|170289127|ref|YP_001739365.1| small GTP-binding protein [Thermotoga sp. RQ2]
 gi|238688753|sp|B1LBI4|DER_THESQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|170176630|gb|ACB09682.1| small GTP-binding protein [Thermotoga sp. RQ2]
          Length = 439

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 4/94 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I +  K+ I+G  N GKS+LFNA+  K+ A+V+ IPGTTRD +  ++ ++G      DTA
Sbjct: 177 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDEEVFIDGKKYVFVDTA 236

Query: 276 GIRETDDI----VEKEGIKRTFLEVENADLILLL 305
           G+R    +    VEK    R    +E AD+++++
Sbjct: 237 GLRRRSRVEPRTVEKYSNYRVVDSIEKADVVVIV 270



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           ++I+G  N GKS+LFN L +K  AIV D  G TRD +   ++  G   K+ DT G+ +  
Sbjct: 4   VLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDIVEWYGKTFKLVDTCGVFDNP 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLY 332
            DI+ ++  + T   +  ADL+L +        KE  S  +     N+D I +  K++  
Sbjct: 64  QDIISQKMKEITLNMIREADLVLFVVDGKRGITKEDESLADFLRKSNVDTILVANKAENL 123

Query: 333 STYTEE 338
             +  E
Sbjct: 124 REFERE 129


>gi|117624740|ref|YP_853653.1| GTP-binding protein EngA [Escherichia coli APEC O1]
 gi|237705021|ref|ZP_04535502.1| GTP-binding protein EngA [Escherichia sp. 3_2_53FAA]
 gi|91073411|gb|ABE08292.1| probable GTP-binding protein EngA [Escherichia coli UTI89]
 gi|115513864|gb|ABJ01939.1| putative GTP-binding protein EngA [Escherichia coli APEC O1]
 gi|226901387|gb|EEH87646.1| GTP-binding protein EngA [Escherichia sp. 3_2_53FAA]
          Length = 503

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 277 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 312



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 18  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           D VE    +++ L +E AD++L + +  S
Sbjct: 78  DGVETRMAEQSLLAIEEADVVLFMVDARS 106


>gi|330443932|ref|YP_004376918.1| GTP-binding protein engA [Chlamydophila pecorum E58]
 gi|328807042|gb|AEB41215.1| GTP-binding protein engA [Chlamydophila pecorum E58]
          Length = 483

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 20/160 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           +I ILG  N GKSSLFN L K+ +AIV    GTTRD L     +    +++ DT G+ ++
Sbjct: 3   RIAILGRPNVGKSSLFNRLCKRSLAIVNAEEGTTRDRLYGSAQICDSTIQVIDTGGVNKD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSD- 330
           + D  +K   K+  +  + ADL+LL+ +I    +++++       P N   I +  K+D 
Sbjct: 63  SQDHFQKHIFKQALVGAKEADLLLLVVDIRCGITEQDMQLAKLLRPLNKPIILVANKADS 122

Query: 331 ---------LYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
                    LYS    E   + S+  G+ ++ L++KI+ +
Sbjct: 123 RKDEFGIHELYSLGIPEIV-VTSAAHGKHIDTLVHKIQRL 161



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 15/166 (9%)

Query: 155 SSLYGQWIDKLTH-IRSFI----------EADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
           S+ +G+ ID L H I+             + D D  EE+++      E + + +F +N  
Sbjct: 144 SAAHGKHIDTLVHKIQRLAKIPEIQPESPQDDEDLHEEKELLCDKESEAIFEEVFDENHE 203

Query: 204 SSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           S  +   +L  +  N   KI ++G  N GKSS+ N L  ++  I  +IPGTTRD + I  
Sbjct: 204 SFFVEDPQLPPLETNQPLKIALIGRPNVGKSSIINGLLNEERCITDNIPGTTRDNVDILY 263

Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
             E       DTAG+R+   +   VE     RT   +  AD+ LL+
Sbjct: 264 TKEDRSYLFIDTAGLRKMKSVKNSVEWISTSRTEKAISRADICLLV 309


>gi|281412785|ref|YP_003346864.1| ribosome-associated GTPase EngA [Thermotoga naphthophila RKU-10]
 gi|281373888|gb|ADA67450.1| ribosome-associated GTPase EngA [Thermotoga naphthophila RKU-10]
          Length = 439

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 4/94 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I +  K+ I+G  N GKS+LFNA+  K+ A+V+ IPGTTRD +  ++ ++G      DTA
Sbjct: 177 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDEEVFIDGKKYVFVDTA 236

Query: 276 GIRETDDI----VEKEGIKRTFLEVENADLILLL 305
           G+R    +    VEK    R    +E AD+++++
Sbjct: 237 GLRRRSRVEPRTVEKYSNYRVVDSIEKADVVVIV 270



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           ++I+G  N GKS+LFN L +K  AIV D  G TRD +   ++  G   K+ DT G+ +  
Sbjct: 4   VLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDIVEWYGKTFKLVDTCGVFDNP 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLY 332
            DI+ ++  + T   +  ADL+L +        KE  S  +     N+D I +  K++  
Sbjct: 64  QDIISQKMKEITLNMIREADLVLFVVDGKRGITKEDESLADFLRKSNVDTILVANKAENL 123

Query: 333 STYTEE 338
             +  E
Sbjct: 124 REFERE 129


>gi|254884683|ref|ZP_05257393.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319642352|ref|ZP_07997007.1| hypothetical protein HMPREF9011_02607 [Bacteroides sp. 3_1_40A]
 gi|254837476|gb|EET17785.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317386012|gb|EFV66936.1| hypothetical protein HMPREF9011_02607 [Bacteroides sp. 3_1_40A]
          Length = 396

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 20/167 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   IV+ G  N+GKSSL NAL  +D A+V+DIPGTT D ++  ++++  G  + I DT 
Sbjct: 10  NRLHIVLFGKRNSGKSSLINALTGQDTALVSDIPGTTTDAVSKAMEIQHIGPCLFI-DTP 68

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISF-----PKNIDFIFIGTKS 329
           G  +  ++ E   I RT   +E  D+ LLL E  N + E  +      +NI  I I  K+
Sbjct: 69  GFDDEGELGEMR-ITRTLKAIERTDIALLLCEDGNCEDEKQWMEQLNKRNIPVILILNKA 127

Query: 330 DLYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKF 366
           D+        D           +IS+    G+E+++  I   L   F
Sbjct: 128 DIRKDIASTRDRIEKECGQNPLIISAKEQTGIEKILQAILEKLPADF 174


>gi|238752471|ref|ZP_04613947.1| GTP-binding protein engA [Yersinia rohdei ATCC 43380]
 gi|238709320|gb|EEQ01562.1| GTP-binding protein engA [Yersinia rohdei ATCC 43380]
          Length = 494

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324
           D VE +   ++ L +E AD++L +               + + S+++ +F      D I 
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358
             T + D YS    E  H I++  G G+ +LI  +
Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKR 267

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +T   +E+++++LL+  I+++  IS
Sbjct: 268 GKITEAVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 303


>gi|323697490|ref|ZP_08109402.1| ribosome-associated GTPase EngA [Desulfovibrio sp. ND132]
 gi|323457422|gb|EGB13287.1| ribosome-associated GTPase EngA [Desulfovibrio desulfuricans ND132]
          Length = 505

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 105/224 (46%), Gaps = 38/224 (16%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +  G ++ +LG  NAGKSS+ NAL  KD  IV+D+ GTTRD + +  +  G      DTA
Sbjct: 182 VEKGLRLTMLGRPNAGKSSIINALIGKDRLIVSDVAGTTRDSIDVTFEKGGKRYTFVDTA 241

Query: 276 GIRETDDI---VEKEGIKRTFLEVENADLILLLKEI------NSKKEISF--PKNIDFIF 324
           G+R+  +I   +EK  + R     + +D+ +L  +I        K+ I F   +   F+ 
Sbjct: 242 GVRKRANIQDHLEKISVIRALKNSKRSDVTVLTIDITLGVGRQDKRLIEFLAKEKTPFMV 301

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           +  K+DL      E +  + +F  E    L+  +  ++++  K L          L  L+
Sbjct: 302 VVNKADLIP--RSETNRALEAFREE--LRLVPHVPVVMTSAVKGLGIG------KLLPLA 351

Query: 385 QTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428
           +T+R         K+C       ++R+ +  L +I   V VE+L
Sbjct: 352 ETMR---------KEC-------DIRVGTGELNRIMQAV-VEKL 378



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+LFN L +K  +I  D+PG TRD +  +  +      + DT G+
Sbjct: 5   VALVGRPNVGKSTLFNRLLRKSRSITHDLPGVTRDRIYGECIMGETRFDLVDTGGM 60


>gi|312884308|ref|ZP_07744017.1| GTP-binding protein EngA [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368081|gb|EFP95624.1| GTP-binding protein EngA [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 495

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 208 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 267

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 268 KRINETVEKFSVVKTLKAIEDANVVLLV--IDARENIS 303



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAEQSLAAIDEADVVLFM 88


>gi|301024743|ref|ZP_07188383.1| ribosome-associated GTPase EngA [Escherichia coli MS 69-1]
 gi|300396412|gb|EFJ79950.1| ribosome-associated GTPase EngA [Escherichia coli MS 69-1]
          Length = 499

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 14  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 74  DGVETRMAEQSLLAIEEADVVLFM 97


>gi|331648208|ref|ZP_08349298.1| ribosome-associated GTPase EngA [Escherichia coli M605]
 gi|26109281|gb|AAN81483.1|AE016764_165 Probable GTP-binding protein engA [Escherichia coli CFT073]
 gi|331043068|gb|EGI15208.1| ribosome-associated GTPase EngA [Escherichia coli M605]
          Length = 503

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 277 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 312



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 18  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 78  DGVETRMAEQSLLAIEEADVVLFM 101


>gi|331643131|ref|ZP_08344266.1| ribosome-associated GTPase EngA [Escherichia coli H736]
 gi|331653939|ref|ZP_08354940.1| ribosome-associated GTPase EngA [Escherichia coli M718]
 gi|331678502|ref|ZP_08379177.1| ribosome-associated GTPase EngA [Escherichia coli H591]
 gi|332278336|ref|ZP_08390749.1| conserved hypothetical protein [Shigella sp. D9]
 gi|25328223|pir||E91050 probable GTP-binding factor [imported] - Escherichia coli  (strain
           O157:H7, substrain RIMD 0509952)
 gi|25328252|pir||A85895 probable GTP-binding factor Z3774 [imported] - Escherichia coli
           (strain O157:H7, substrain EDL933)
 gi|12516902|gb|AAG57621.1|AE005480_8 putative GTP-binding factor [Escherichia coli O157:H7 str. EDL933]
 gi|13362843|dbj|BAB36796.1| putative GTP-binding factor [Escherichia coli O157:H7 str. Sakai]
 gi|209763418|gb|ACI80021.1| putative GTP-binding factor [Escherichia coli]
 gi|209763420|gb|ACI80022.1| putative GTP-binding factor [Escherichia coli]
 gi|209763422|gb|ACI80023.1| putative GTP-binding factor [Escherichia coli]
 gi|209763426|gb|ACI80025.1| putative GTP-binding factor [Escherichia coli]
 gi|331039929|gb|EGI12149.1| ribosome-associated GTPase EngA [Escherichia coli H736]
 gi|331048788|gb|EGI20864.1| ribosome-associated GTPase EngA [Escherichia coli M718]
 gi|331074962|gb|EGI46282.1| ribosome-associated GTPase EngA [Escherichia coli H591]
 gi|332100688|gb|EGJ04034.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 503

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 277 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 312



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 18  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 78  DGVETRMAEQSLLAIEEADVVLFM 101


>gi|238794826|ref|ZP_04638427.1| GTP-binding protein engA [Yersinia intermedia ATCC 29909]
 gi|238725839|gb|EEQ17392.1| GTP-binding protein engA [Yersinia intermedia ATCC 29909]
          Length = 495

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324
           D VE +   ++ L +E AD++L +               + + S+++ +F      D I 
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358
             T + D YS    E  H I++  G G+ +LI  +
Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKR 268

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +T   +E+++++LL+  I+++  IS
Sbjct: 269 GKITETVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 304


>gi|71898142|ref|ZP_00680328.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa
           Ann-1]
 gi|71732116|gb|EAO34172.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa
           Ann-1]
          Length = 465

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           I  +G  N GKS+L N L  ++  IV+D+PGTTRD +T+DL+ + +  ++ DTAG+R   
Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTRDSITVDLERDEFRYRLVDTAGLRRKS 240

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           + ++ VEK    +T   +E   + +LL
Sbjct: 241 KVEEAVEKFSAFKTLQAIEQCQVAVLL 267



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 22/179 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           + ++G  N GKS+LFNAL     A+V D PG TRD       ++G  L  + DT G+   
Sbjct: 5   VALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGGMVGK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTK 328
           +D +     ++  L    AD++L +  +               +++S P  +    I   
Sbjct: 65  EDGLAGATARQARLAAAEADVLLFVVNVREGASALDDDILAWLRKLSQPTLLVINKIDGV 124

Query: 329 SDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           SD  +T   E+ H        +S+   +GL++LI ++ + L  +     F+  S + H+
Sbjct: 125 SD--TTVHSEFAHYGFSDVVPVSAAHRQGLDDLIEQVLAWLPERSIGEAFNEDSERIHI 181


>gi|320175074|gb|EFW50187.1| GTP-binding protein EngA [Shigella dysenteriae CDC 74-1112]
          Length = 490

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|300920666|ref|ZP_07137077.1| ribosome-associated GTPase EngA [Escherichia coli MS 115-1]
 gi|300412347|gb|EFJ95657.1| ribosome-associated GTPase EngA [Escherichia coli MS 115-1]
          Length = 499

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 14  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 74  DGVETRMAEQSLLAIEEADVVLFM 97


>gi|299135837|ref|ZP_07029021.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX8]
 gi|298601961|gb|EFI58115.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX8]
          Length = 631

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 3/96 (3%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           GE I    KI I+G  N GKS+L NAL   D AIV+ I GTTRD +   +  EG+  +  
Sbjct: 347 GEHISRETKIAIIGRPNVGKSTLLNALTGSDRAIVSPIAGTTRDAVDEVVTREGHDFRFI 406

Query: 273 DTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           DTAGIR   +T  + EK  +  +   +E AD+ LL+
Sbjct: 407 DTAGIRRKGKTKLLAEKLSVIMSRKHLEAADVALLV 442



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 58/97 (59%), Gaps = 3/97 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G  N GKS+LFN L +   +IV D PG TRD +  +++  G  V++ DT G+   D
Sbjct: 137 VAICGRPNVGKSTLFNRLTQTRRSIVGDEPGITRDRIYGEVEWAGRDVRLVDTGGVIPDD 196

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           + ++  E  ++  + +E AD+I+++  ++ + E++ P
Sbjct: 197 EALIPAEIFRQAKVGLEEADVIIMV--VDGRTELAAP 231


>gi|209763424|gb|ACI80024.1| putative GTP-binding factor [Escherichia coli]
          Length = 503

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 277 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 312



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 18  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 78  DGVETRMAEQSLLAIEEADVVLFM 101


>gi|227887546|ref|ZP_04005351.1| GTP-binding protein [Escherichia coli 83972]
 gi|300981973|ref|ZP_07175819.1| ribosome-associated GTPase EngA [Escherichia coli MS 45-1]
 gi|300998067|ref|ZP_07181927.1| ribosome-associated GTPase EngA [Escherichia coli MS 200-1]
 gi|301047143|ref|ZP_07194239.1| ribosome-associated GTPase EngA [Escherichia coli MS 185-1]
 gi|227835896|gb|EEJ46362.1| GTP-binding protein [Escherichia coli 83972]
 gi|300300945|gb|EFJ57330.1| ribosome-associated GTPase EngA [Escherichia coli MS 185-1]
 gi|300304046|gb|EFJ58566.1| ribosome-associated GTPase EngA [Escherichia coli MS 200-1]
 gi|300408868|gb|EFJ92406.1| ribosome-associated GTPase EngA [Escherichia coli MS 45-1]
 gi|315292449|gb|EFU51801.1| ribosome-associated GTPase EngA [Escherichia coli MS 153-1]
 gi|324011217|gb|EGB80436.1| ribosome-associated GTPase EngA [Escherichia coli MS 60-1]
          Length = 499

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 14  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 74  DGVETRMAEQSLLAIEEADVVLFM 97


>gi|86605901|ref|YP_474664.1| GTP-binding protein EngA [Synechococcus sp. JA-3-3Ab]
 gi|123506716|sp|Q2JV46|DER_SYNJA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|86554443|gb|ABC99401.1| GTP-binding protein EngA [Synechococcus sp. JA-3-3Ab]
          Length = 459

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N L   + AIV+ I GTTRD +   ++ EG   ++ DTAGIR   
Sbjct: 181 VAIVGRPNVGKSSLLNRLVGSERAIVSPIAGTTRDAVDTLVEWEGQSYRLIDTAGIRRKS 240

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   VE   I R F  ++ +D++LL+
Sbjct: 241 RVEYGVEFFSINRAFKAIQRSDVVLLV 267



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N LA    AIV D PG TRD L  +++  G  +++ DT G+   D
Sbjct: 6   VAVVGRPNVGKSSLVNRLAGVRSAIVHDEPGITRDRLYQEVEWNGRRLRVVDTGGLVFGD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|81242044|gb|ABB62754.1| putative GTP-binding factor [Shigella dysenteriae Sd197]
          Length = 503

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 277 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 312



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 18  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 78  DGVETRMAEQSLLAIEEADVVLFM 101


>gi|81246371|gb|ABB67079.1| putative GTP-binding factor [Shigella boydii Sb227]
          Length = 503

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 277 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 312



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 18  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 78  DGVETRMAEQSLLAIEEADVVLFM 101


>gi|71274603|ref|ZP_00650891.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa
           Dixon]
 gi|71900907|ref|ZP_00683022.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa
           Ann-1]
 gi|170730865|ref|YP_001776298.1| GTP-binding protein EngA [Xylella fastidiosa M12]
 gi|238687938|sp|B0U489|DER_XYLFM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|71164335|gb|EAO14049.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa
           Dixon]
 gi|71729319|gb|EAO31435.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa
           Ann-1]
 gi|167965658|gb|ACA12668.1| GTP-binding protein [Xylella fastidiosa M12]
          Length = 465

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           I  +G  N GKS+L N L  ++  IV+D+PGTTRD +T+DL+ + +  ++ DTAG+R   
Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTRDSITVDLERDEFRYRLVDTAGLRRKS 240

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           + ++ VEK    +T   +E   + +LL
Sbjct: 241 KVEEAVEKFSAFKTLQAIEQCQVAVLL 267



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 22/164 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           + ++G  N GKS+LFNAL     A+V D PG TRD       ++G  L  + DT G+   
Sbjct: 5   VALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGGMVGK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTK 328
           +D +     ++  L    AD++L +  +               +++S P  +    I   
Sbjct: 65  EDGLAGATARQARLAAAEADVVLFVVNVREGASALDDDILAWLRKLSQPTLLVINKIDGV 124

Query: 329 SDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNK 365
           SD  +T   E+ H        +S+   +GL++LI ++ + L  +
Sbjct: 125 SD--TTVHSEFAHYGFSDVVPVSAAHRQGLDDLIEQVLAWLPER 166


>gi|325496456|gb|EGC94315.1| putative GTP-binding factor [Escherichia fergusonii ECD227]
          Length = 499

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 14  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 74  DGVETRMAEQSLLAIEEADVVLFM 97


>gi|150002947|ref|YP_001297691.1| putative GTP-binding protein, putative GTPase [Bacteroides vulgatus
           ATCC 8482]
 gi|149931371|gb|ABR38069.1| putative GTP-binding protein, putative GTPase [Bacteroides vulgatus
           ATCC 8482]
          Length = 396

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 20/167 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   IV+ G  N+GKSSL NAL  +D A+V+DIPGTT D ++  ++++  G  + I DT 
Sbjct: 10  NRLHIVLFGKRNSGKSSLINALTGQDTALVSDIPGTTTDAVSKAMEIQHIGPCLFI-DTP 68

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISF-----PKNIDFIFIGTKS 329
           G  +  ++ E   I RT   +E  D+ LLL E  N + E  +      +NI  I I  K+
Sbjct: 69  GFDDEGELGEMR-ITRTLKAIERTDIALLLCEDGNCEDEKQWMEQLNKRNIPVILILNKA 127

Query: 330 DLYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKF 366
           D+        D           +IS+    G+E+++  I   L   F
Sbjct: 128 DIRKDIASTRDRIEKECGQNPLIISAKEQTGIEKILQAILEKLPADF 174


>gi|73541770|ref|YP_296290.1| GTP-binding protein EngA [Ralstonia eutropha JMP134]
 gi|123732900|sp|Q46ZI7|DER_RALEJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|72119183|gb|AAZ61446.1| Small GTP-binding protein domain:GTP-binding [Ralstonia eutropha
           JMP134]
          Length = 447

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  ++  I  D+PGTTRD + ++ +  G    + DTAG+R
Sbjct: 180 GVKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAGLR 239

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   + +A++++LL  ++++++IS
Sbjct: 240 RRGKVFEAIEKFSVVKTLQSIADANVVILL--LDAQQDIS 277



 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 28/159 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + +   A+V D+PG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRMTRSRDALVADLPGLTRDRHYGEGRIGDRPFIAIDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILL------------------LKEINSKKEISFPK 318
           + V KEGI     K+T   V  AD+++                   L++   +  ++  K
Sbjct: 61  EPVVKEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRAIADYLRKTGRRVMLAVNK 120

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
                +    +D Y     +  + IS+  G+G+ EL+++
Sbjct: 121 AEGMKYTSVAADFYELGMGD-PYAISAAHGDGVRELVDE 158


>gi|87125615|ref|ZP_01081460.1| putative GTP-binding protein [Synechococcus sp. RS9917]
 gi|86166915|gb|EAQ68177.1| putative GTP-binding protein [Synechococcus sp. RS9917]
          Length = 455

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD +   L+  G   ++ DTAGIR  
Sbjct: 179 QMAIIGRPNVGKSSLLNAICGEPRAIVSPIRGTTRDTIDTRLERNGLSWRLVDTAGIRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  +E +D+ +L+
Sbjct: 239 RSVHYGPEFFGINRSFKAIERSDVCVLV 266



 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQDGYWGDREFKLVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|238785325|ref|ZP_04629314.1| GTP-binding protein engA [Yersinia bercovieri ATCC 43970]
 gi|238713778|gb|EEQ05801.1| GTP-binding protein engA [Yersinia bercovieri ATCC 43970]
          Length = 494

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324
           D VE +   ++ L +E AD++L +               + + S+++ +F      D I 
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358
             T + D YS    E  H I++  G G+ +LI  +
Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMTRDEREYVLIDTAGVRKR 267

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+++++LL+  I+++  IS
Sbjct: 268 GKVTETVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 303


>gi|120554059|ref|YP_958410.1| GTP-binding protein EngA [Marinobacter aquaeolei VT8]
 gi|166225823|sp|A1TZQ4|DER_MARAV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|120323908|gb|ABM18223.1| small GTP-binding protein [Marinobacter aquaeolei VT8]
          Length = 473

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +I ++G  N GKS+L N +  +D  +V D+PGTTRD + I  + +G+   + DTAG+R
Sbjct: 176 GIRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYERQGHEYTLIDTAGVR 235

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305
              ++   VEK  I +T   +++A +++L+
Sbjct: 236 RRKNVREAVEKFSIIKTLQAIDDAHVVILV 265



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + +   A+V D PG TRD    + + EG    + DT G+   +
Sbjct: 5   IALVGRPNVGKSTLFNQMTRSRDALVADFPGLTRDRKYGEGNYEGQKFIVIDTGGLTGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++ E  +++   VE AD++L L
Sbjct: 65  AGIDAEMARQSMQAVEEADIVLFL 88


>gi|288934098|ref|YP_003438157.1| ribosome-associated GTPase EngA [Klebsiella variicola At-22]
 gi|290508296|ref|ZP_06547667.1| ribosome-associated GTPase EngA [Klebsiella sp. 1_1_55]
 gi|288888827|gb|ADC57145.1| ribosome-associated GTPase EngA [Klebsiella variicola At-22]
 gi|289777690|gb|EFD85687.1| ribosome-associated GTPase EngA [Klebsiella sp. 1_1_55]
          Length = 492

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 206 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKR 265

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D+VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 266 GKITDVVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 301



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L +
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFM 88


>gi|170681267|ref|YP_001744699.1| GTP-binding protein EngA [Escherichia coli SMS-3-5]
 gi|218706014|ref|YP_002413533.1| GTP-binding protein EngA [Escherichia coli UMN026]
 gi|293405952|ref|ZP_06649944.1| GTP-binding protein engA [Escherichia coli FVEC1412]
 gi|298381753|ref|ZP_06991352.1| GTP-binding protein engA [Escherichia coli FVEC1302]
 gi|331664074|ref|ZP_08364984.1| ribosome-associated GTPase EngA [Escherichia coli TA143]
 gi|226741139|sp|B7N699|DER_ECOLU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226741140|sp|B1LNG6|DER_ECOSM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|170518985|gb|ACB17163.1| GTP-binding protein EngA [Escherichia coli SMS-3-5]
 gi|218433111|emb|CAR14008.1| GTPase involved in ribosome synthesis and maintenance [Escherichia
           coli UMN026]
 gi|284922461|emb|CBG35548.1| GTP-binding protein [Escherichia coli 042]
 gi|291428160|gb|EFF01187.1| GTP-binding protein engA [Escherichia coli FVEC1412]
 gi|298279195|gb|EFI20709.1| GTP-binding protein engA [Escherichia coli FVEC1302]
 gi|323961327|gb|EGB56939.1| ribosome GTPase EngA [Escherichia coli H489]
 gi|331059873|gb|EGI31850.1| ribosome-associated GTPase EngA [Escherichia coli TA143]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|162138394|ref|YP_541823.2| GTP-binding protein EngA [Escherichia coli UTI89]
 gi|218559437|ref|YP_002392350.1| GTP-binding protein EngA [Escherichia coli S88]
 gi|218690631|ref|YP_002398843.1| GTP-binding protein EngA [Escherichia coli ED1a]
 gi|306814419|ref|ZP_07448581.1| GTP-binding protein EngA [Escherichia coli NC101]
 gi|226741136|sp|B7MHZ6|DER_ECO45 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783154|sp|B7MYE6|DER_ECO81 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|218366206|emb|CAR03954.1| GTPase involved in ribosome synthesis and maintenance [Escherichia
           coli S88]
 gi|218428195|emb|CAR09112.2| GTPase involved in ribosome synthesis and maintenance [Escherichia
           coli ED1a]
 gi|222034222|emb|CAP76963.1| GTP-binding protein engA [Escherichia coli LF82]
 gi|294491525|gb|ADE90281.1| ribosome-associated GTPase EngA [Escherichia coli IHE3034]
 gi|305851813|gb|EFM52265.1| GTP-binding protein EngA [Escherichia coli NC101]
 gi|307625933|gb|ADN70237.1| GTP-binding protein EngA [Escherichia coli UM146]
 gi|312947088|gb|ADR27915.1| GTP-binding protein EngA [Escherichia coli O83:H1 str. NRG 857C]
 gi|323949171|gb|EGB45062.1| ribosome GTPase EngA [Escherichia coli H252]
 gi|323955752|gb|EGB51510.1| ribosome GTPase EngA [Escherichia coli H263]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           D VE    +++ L +E AD++L + +  S
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARS 93


>gi|300820819|ref|ZP_07100969.1| ribosome-associated GTPase EngA [Escherichia coli MS 119-7]
 gi|300927126|ref|ZP_07142874.1| ribosome-associated GTPase EngA [Escherichia coli MS 182-1]
 gi|300930151|ref|ZP_07145572.1| ribosome-associated GTPase EngA [Escherichia coli MS 187-1]
 gi|300951784|ref|ZP_07165599.1| ribosome-associated GTPase EngA [Escherichia coli MS 116-1]
 gi|300958859|ref|ZP_07170967.1| ribosome-associated GTPase EngA [Escherichia coli MS 175-1]
 gi|301302868|ref|ZP_07208996.1| ribosome-associated GTPase EngA [Escherichia coli MS 124-1]
 gi|301330398|ref|ZP_07223040.1| ribosome-associated GTPase EngA [Escherichia coli MS 78-1]
 gi|301648266|ref|ZP_07248009.1| ribosome-associated GTPase EngA [Escherichia coli MS 146-1]
 gi|309794442|ref|ZP_07688865.1| ribosome-associated GTPase EngA [Escherichia coli MS 145-7]
 gi|300314511|gb|EFJ64295.1| ribosome-associated GTPase EngA [Escherichia coli MS 175-1]
 gi|300416896|gb|EFK00207.1| ribosome-associated GTPase EngA [Escherichia coli MS 182-1]
 gi|300448981|gb|EFK12601.1| ribosome-associated GTPase EngA [Escherichia coli MS 116-1]
 gi|300461957|gb|EFK25450.1| ribosome-associated GTPase EngA [Escherichia coli MS 187-1]
 gi|300526572|gb|EFK47641.1| ribosome-associated GTPase EngA [Escherichia coli MS 119-7]
 gi|300841803|gb|EFK69563.1| ribosome-associated GTPase EngA [Escherichia coli MS 124-1]
 gi|300843627|gb|EFK71387.1| ribosome-associated GTPase EngA [Escherichia coli MS 78-1]
 gi|301073653|gb|EFK88459.1| ribosome-associated GTPase EngA [Escherichia coli MS 146-1]
 gi|308121898|gb|EFO59160.1| ribosome-associated GTPase EngA [Escherichia coli MS 145-7]
 gi|315256531|gb|EFU36499.1| ribosome-associated GTPase EngA [Escherichia coli MS 85-1]
 gi|324020071|gb|EGB89290.1| ribosome-associated GTPase EngA [Escherichia coli MS 117-3]
          Length = 499

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 14  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 74  DGVETRMAEQSLLAIEEADVVLFM 97


>gi|218548052|ref|YP_002381843.1| GTP-binding protein EngA [Escherichia fergusonii ATCC 35469]
 gi|331684159|ref|ZP_08384755.1| ribosome-associated GTPase EngA [Escherichia coli H299]
 gi|226741141|sp|B7LKC7|DER_ESCF3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|218355593|emb|CAQ88204.1| GTPase involved in ribosome synthesis and maintenance [Escherichia
           fergusonii ATCC 35469]
 gi|323967959|gb|EGB63371.1| ribosome GTPase EngA [Escherichia coli M863]
 gi|327252218|gb|EGE63890.1| small GTP-binding domain protein [Escherichia coli STEC_7v]
 gi|331079111|gb|EGI50313.1| ribosome-associated GTPase EngA [Escherichia coli H299]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|333002306|gb|EGK21870.1| small GTP-binding domain protein [Shigella flexneri K-272]
 gi|333016129|gb|EGK35461.1| small GTP-binding domain protein [Shigella flexneri K-227]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|332087958|gb|EGI93083.1| small GTP-binding domain protein [Shigella boydii 5216-82]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|324113005|gb|EGC06981.1| ribosome GTPase EngA [Escherichia fergusonii B253]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|323977306|gb|EGB72392.1| ribosome GTPase EngA [Escherichia coli TW10509]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|110642676|ref|YP_670406.1| GTP-binding protein EngA [Escherichia coli 536]
 gi|161486155|ref|NP_754915.2| GTP-binding protein EngA [Escherichia coli CFT073]
 gi|191172582|ref|ZP_03034121.1| ribosome-associated GTPase EngA [Escherichia coli F11]
 gi|218701021|ref|YP_002408650.1| GTP-binding protein EngA [Escherichia coli IAI39]
 gi|312965427|ref|ZP_07779659.1| small GTP-binding domain protein [Escherichia coli 2362-75]
 gi|31563151|sp|Q8FF59|DER_ECOL6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123147831|sp|Q0TEX4|DER_ECOL5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226741137|sp|B7NQW0|DER_ECO7I RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|110344268|gb|ABG70505.1| probable GTP-binding protein EngA [Escherichia coli 536]
 gi|190907055|gb|EDV66655.1| ribosome-associated GTPase EngA [Escherichia coli F11]
 gi|218371007|emb|CAR18835.1| GTPase involved in ribosome synthesis and maintenance [Escherichia
           coli IAI39]
 gi|281179565|dbj|BAI55895.1| putative GTP-binding protein [Escherichia coli SE15]
 gi|307554534|gb|ADN47309.1| GTP-binding protein EngA [Escherichia coli ABU 83972]
 gi|312289847|gb|EFR17735.1| small GTP-binding domain protein [Escherichia coli 2362-75]
 gi|320196348|gb|EFW70972.1| GTP-binding protein EngA [Escherichia coli WV_060327]
 gi|323188371|gb|EFZ73663.1| small GTP-binding domain protein [Escherichia coli RN587/1]
 gi|330912286|gb|EGH40796.1| GTP-binding protein EngA [Escherichia coli AA86]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|113474219|ref|YP_720280.1| GTP-binding protein EngA [Trichodesmium erythraeum IMS101]
 gi|123161345|sp|Q119L7|DER_TRIEI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|110165267|gb|ABG49807.1| small GTP-binding protein [Trichodesmium erythraeum IMS101]
          Length = 453

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 6/111 (5%)

Query: 199 LKNDISSHI-SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           L +D+ +++ +QG++ E   N  KI I+G  N GKSSL N+   +  AIV+ I GTTRD 
Sbjct: 157 LLDDLITYLPTQGEITET--NQTKIAIVGRPNVGKSSLLNSFIGEKRAIVSPISGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +   ++  G   ++ DTAGIR+  ++    E  GI R F  +  A++++ +
Sbjct: 215 IDTVVERNGKTYRLIDTAGIRKKKNVEYGAEFFGINRAFKAIRRAEVVMFV 265



 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G  N GKS++ N LA+   AIV D PG TRD    +   E    ++ DT G+
Sbjct: 6   VAIIGRPNVGKSTIVNRLAESKDAIVHDEPGITRDRTYRNAYWEDREFQVVDTGGL 61


>gi|320185211|gb|EFW59991.1| GTP-binding protein EngA [Shigella flexneri CDC 796-83]
 gi|332092745|gb|EGI97814.1| small GTP-binding domain protein [Shigella boydii 3594-74]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|89109317|ref|AP_003097.1| predicted GTP-binding protein [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111450|ref|NP_417006.2| GTPase; multicopy suppressor of ftsJ [Escherichia coli str. K-12
           substr. MG1655]
 gi|157156728|ref|YP_001463833.1| GTP-binding protein EngA [Escherichia coli E24377A]
 gi|157161986|ref|YP_001459304.1| GTP-binding protein EngA [Escherichia coli HS]
 gi|161367551|ref|NP_289064.2| GTP-binding protein EngA [Escherichia coli O157:H7 EDL933]
 gi|162139766|ref|NP_311400.2| GTP-binding protein EngA [Escherichia coli O157:H7 str. Sakai]
 gi|168748430|ref|ZP_02773452.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756283|ref|ZP_02781290.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761121|ref|ZP_02786128.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768603|ref|ZP_02793610.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773575|ref|ZP_02798582.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778477|ref|ZP_02803484.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787857|ref|ZP_02812864.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC869]
 gi|168798882|ref|ZP_02823889.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC508]
 gi|170019206|ref|YP_001724160.1| GTP-binding protein EngA [Escherichia coli ATCC 8739]
 gi|170082121|ref|YP_001731441.1| GTP-binding protein [Escherichia coli str. K-12 substr. DH10B]
 gi|188494621|ref|ZP_03001891.1| GTP-binding protein EngA [Escherichia coli 53638]
 gi|191167672|ref|ZP_03029481.1| ribosome-associated GTPase EngA [Escherichia coli B7A]
 gi|193064026|ref|ZP_03045111.1| ribosome-associated GTPase EngA [Escherichia coli E22]
 gi|194427302|ref|ZP_03059852.1| ribosome-associated GTPase EngA [Escherichia coli B171]
 gi|194437572|ref|ZP_03069668.1| ribosome-associated GTPase EngA [Escherichia coli 101-1]
 gi|195936653|ref|ZP_03082035.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. EC4024]
 gi|208814338|ref|ZP_03255667.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821434|ref|ZP_03261754.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399678|ref|YP_002271981.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919988|ref|YP_002294072.1| GTP-binding protein EngA [Escherichia coli SE11]
 gi|217326913|ref|ZP_03442996.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555036|ref|YP_002387949.1| GTP-binding protein EngA [Escherichia coli IAI1]
 gi|218696138|ref|YP_002403805.1| GTP-binding protein EngA [Escherichia coli 55989]
 gi|238901676|ref|YP_002927472.1| putative GTP-binding protein [Escherichia coli BW2952]
 gi|253772595|ref|YP_003035426.1| GTP-binding protein EngA [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162485|ref|YP_003045593.1| GTP-binding protein EngA [Escherichia coli B str. REL606]
 gi|254794457|ref|YP_003079294.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. TW14359]
 gi|256017341|ref|ZP_05431206.1| GTP-binding protein EngA [Shigella sp. D9]
 gi|256021803|ref|ZP_05435668.1| GTP-binding protein EngA [Escherichia sp. 4_1_40B]
 gi|260845141|ref|YP_003222919.1| putative GTP-binding protein Der [Escherichia coli O103:H2 str.
           12009]
 gi|260856605|ref|YP_003230496.1| putative GTP-binding protein Der [Escherichia coli O26:H11 str.
           11368]
 gi|260869200|ref|YP_003235602.1| putative GTP-binding protein Der [Escherichia coli O111:H- str.
           11128]
 gi|261223057|ref|ZP_05937338.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259392|ref|ZP_05951925.1| putative GTP-binding protein Der [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283732|ref|YP_003500550.1| GTP-binding protein engA [Escherichia coli O55:H7 str. CB9615]
 gi|293415776|ref|ZP_06658419.1| ribosome-associated GTPase EngA [Escherichia coli B185]
 gi|293446864|ref|ZP_06663286.1| ribosome-associated GTPase EngA [Escherichia coli B088]
 gi|301022369|ref|ZP_07186258.1| ribosome-associated GTPase EngA [Escherichia coli MS 196-1]
 gi|307139146|ref|ZP_07498502.1| GTP-binding protein EngA [Escherichia coli H736]
 gi|307312494|ref|ZP_07592127.1| ribosome-associated GTPase EngA [Escherichia coli W]
 gi|312973248|ref|ZP_07787420.1| small GTP-binding domain protein [Escherichia coli 1827-70]
 gi|331669257|ref|ZP_08370105.1| ribosome-associated GTPase EngA [Escherichia coli TA271]
 gi|68566316|sp|P0A6P5|DER_ECOLI RecName: Full=GTPase Der; AltName: Full=Double era-like domain
           protein; AltName: Full=GTP-binding protein EngA
 gi|68566317|sp|P0A6P6|DER_ECO57 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166920098|sp|A7ZPV4|DER_ECO24 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166920099|sp|A8A317|DER_ECOHS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037147|sp|B1IWF0|DER_ECOLC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226741138|sp|B7M7L5|DER_ECO8A RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|229784133|sp|B1XAY6|DER_ECODH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238058973|sp|B5Z0Y0|DER_ECO5E RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238058974|sp|B6I583|DER_ECOSE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783153|sp|B7LCQ1|DER_ECO55 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|259645873|sp|C4ZX86|DER_ECOBW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|85675433|dbj|BAA16397.2| predicted GTP-binding protein [Escherichia coli str. K12 substr.
           W3110]
 gi|87082120|gb|AAC75564.2| GTPase; multicopy suppressor of ftsJ [Escherichia coli str. K-12
           substr. MG1655]
 gi|157067666|gb|ABV06921.1| GTP-binding protein EngA [Escherichia coli HS]
 gi|157078758|gb|ABV18466.1| GTP-binding protein EngA [Escherichia coli E24377A]
 gi|169754134|gb|ACA76833.1| small GTP-binding protein [Escherichia coli ATCC 8739]
 gi|169889956|gb|ACB03663.1| predicted GTP-binding protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187770576|gb|EDU34420.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017037|gb|EDU55159.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489820|gb|EDU64923.1| GTP-binding protein EngA [Escherichia coli 53638]
 gi|189003270|gb|EDU72256.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356591|gb|EDU75010.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362188|gb|EDU80607.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368460|gb|EDU86876.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372347|gb|EDU90763.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC869]
 gi|189378586|gb|EDU97002.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC508]
 gi|190902271|gb|EDV62011.1| ribosome-associated GTPase EngA [Escherichia coli B7A]
 gi|192929261|gb|EDV82870.1| ribosome-associated GTPase EngA [Escherichia coli E22]
 gi|194414623|gb|EDX30895.1| ribosome-associated GTPase EngA [Escherichia coli B171]
 gi|194423378|gb|EDX39369.1| ribosome-associated GTPase EngA [Escherichia coli 101-1]
 gi|208735615|gb|EDZ84302.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741557|gb|EDZ89239.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161078|gb|ACI38511.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209913247|dbj|BAG78321.1| putative GTP-binding protein [Escherichia coli SE11]
 gi|217319280|gb|EEC27705.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352870|emb|CAU98669.1| GTPase involved in ribosome synthesis and maintenance [Escherichia
           coli 55989]
 gi|218361804|emb|CAQ99403.1| GTPase involved in ribosome synthesis and maintenance [Escherichia
           coli IAI1]
 gi|238862452|gb|ACR64450.1| predicted GTP-binding protein [Escherichia coli BW2952]
 gi|242378109|emb|CAQ32882.1| 50S ribosomal subunit stability factor [Escherichia coli BL21(DE3)]
 gi|253323639|gb|ACT28241.1| small GTP-binding protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974386|gb|ACT40057.1| GTP-binding protein EngA [Escherichia coli B str. REL606]
 gi|253978553|gb|ACT44223.1| GTP-binding protein EngA [Escherichia coli BL21(DE3)]
 gi|254593857|gb|ACT73218.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Escherichia coli
           O157:H7 str. TW14359]
 gi|257755254|dbj|BAI26756.1| predicted GTP-binding protein Der [Escherichia coli O26:H11 str.
           11368]
 gi|257760288|dbj|BAI31785.1| predicted GTP-binding protein Der [Escherichia coli O103:H2 str.
           12009]
 gi|257765556|dbj|BAI37051.1| predicted GTP-binding protein Der [Escherichia coli O111:H- str.
           11128]
 gi|260448409|gb|ACX38831.1| small GTP-binding protein [Escherichia coli DH1]
 gi|290763605|gb|ADD57566.1| GTP-binding protein engA [Escherichia coli O55:H7 str. CB9615]
 gi|291323694|gb|EFE63122.1| ribosome-associated GTPase EngA [Escherichia coli B088]
 gi|291433424|gb|EFF06403.1| ribosome-associated GTPase EngA [Escherichia coli B185]
 gi|299881282|gb|EFI89493.1| ribosome-associated GTPase EngA [Escherichia coli MS 196-1]
 gi|306907417|gb|EFN37921.1| ribosome-associated GTPase EngA [Escherichia coli W]
 gi|309702843|emb|CBJ02174.1| GTP-binding protein [Escherichia coli ETEC H10407]
 gi|310331843|gb|EFP99078.1| small GTP-binding domain protein [Escherichia coli 1827-70]
 gi|315061830|gb|ADT76157.1| predicted GTP-binding protein [Escherichia coli W]
 gi|315137135|dbj|BAJ44294.1| GTP-binding protein engA [Escherichia coli DH1]
 gi|315615770|gb|EFU96402.1| small GTP-binding domain protein [Escherichia coli 3431]
 gi|320180501|gb|EFW55432.1| GTP-binding protein EngA [Shigella boydii ATCC 9905]
 gi|320188844|gb|EFW63503.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. EC1212]
 gi|320200075|gb|EFW74664.1| GTP-binding protein EngA [Escherichia coli EC4100B]
 gi|320640855|gb|EFX10343.1| GTP-binding protein Der [Escherichia coli O157:H7 str. G5101]
 gi|320646298|gb|EFX15225.1| GTP-binding protein Der [Escherichia coli O157:H- str. 493-89]
 gi|320651803|gb|EFX20183.1| GTP-binding protein Der [Escherichia coli O157:H- str. H 2687]
 gi|320657189|gb|EFX24998.1| GTP-binding protein Der [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662795|gb|EFX30127.1| GTP-binding protein Der [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667599|gb|EFX34514.1| GTP-binding protein Der [Escherichia coli O157:H7 str. LSU-61]
 gi|323156165|gb|EFZ42324.1| small GTP-binding domain protein [Escherichia coli EPECa14]
 gi|323159381|gb|EFZ45366.1| small GTP-binding domain protein [Escherichia coli E128010]
 gi|323170218|gb|EFZ55871.1| small GTP-binding domain protein [Escherichia coli LT-68]
 gi|323177365|gb|EFZ62953.1| small GTP-binding domain protein [Escherichia coli 1180]
 gi|323184428|gb|EFZ69803.1| small GTP-binding domain protein [Escherichia coli 1357]
 gi|323377589|gb|ADX49857.1| ribosome-associated GTPase EngA [Escherichia coli KO11]
 gi|323936404|gb|EGB32694.1| ribosome-associated GTPase EngA [Escherichia coli E1520]
 gi|323941227|gb|EGB37412.1| ribosome GTPase EngA [Escherichia coli E482]
 gi|323944733|gb|EGB40800.1| ribosome-associated GTPase EngA [Escherichia coli H120]
 gi|323971076|gb|EGB66324.1| ribosome GTPase EngA [Escherichia coli TA007]
 gi|324118145|gb|EGC12042.1| ribosome GTPase EngA [Escherichia coli E1167]
 gi|326340309|gb|EGD64113.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. 1125]
 gi|326344993|gb|EGD68737.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. 1044]
 gi|331064451|gb|EGI36362.1| ribosome-associated GTPase EngA [Escherichia coli TA271]
 gi|332344383|gb|AEE57717.1| conserved hypothetical protein [Escherichia coli UMNK88]
 gi|333000699|gb|EGK20275.1| small GTP-binding domain protein [Shigella flexneri VA-6]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|300904315|ref|ZP_07122172.1| ribosome-associated GTPase EngA [Escherichia coli MS 84-1]
 gi|300403747|gb|EFJ87285.1| ribosome-associated GTPase EngA [Escherichia coli MS 84-1]
          Length = 492

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 14  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 74  DGVETRMAEQSLLAIEEADVVLFM 97


>gi|238753871|ref|ZP_04615231.1| GTP-binding protein engA [Yersinia ruckeri ATCC 29473]
 gi|238707859|gb|EEQ00217.1| GTP-binding protein engA [Yersinia ruckeri ATCC 29473]
          Length = 496

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF---PKNIDFI 323
           D VE     ++ L +E AD++L +               + + S+++ +F    K     
Sbjct: 65  DGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSRQKATFLVANKTDGME 124

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
                +D YS    E  H I++  G G+ +LI ++
Sbjct: 125 PEAAAADFYSLGMGEV-HPIAASHGRGVAQLIEEV 158



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 211 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMIRDEREYILIDTAGVRKR 270

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+++++LL+  I+++  IS
Sbjct: 271 GKVTETVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 306


>gi|215487861|ref|YP_002330292.1| GTP-binding protein EngA [Escherichia coli O127:H6 str. E2348/69]
 gi|254783152|sp|B7UGV7|DER_ECO27 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|215265933|emb|CAS10342.1| predicted GTP-binding protein [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|161950068|ref|YP_404245.2| GTP-binding protein EngA [Shigella dysenteriae Sd197]
 gi|309784738|ref|ZP_07679371.1| small GTP-binding domain protein [Shigella dysenteriae 1617]
 gi|308927108|gb|EFP72582.1| small GTP-binding domain protein [Shigella dysenteriae 1617]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|152971372|ref|YP_001336481.1| GTP-binding protein EngA [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238895966|ref|YP_002920702.1| GTP-binding protein EngA [Klebsiella pneumoniae NTUH-K2044]
 gi|262040248|ref|ZP_06013499.1| ribosome-associated GTPase EngA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330007822|ref|ZP_08306080.1| ribosome biogenesis GTPase Der [Klebsiella sp. MS 92-3]
 gi|166198723|sp|A6TCD0|DER_KLEP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|150956221|gb|ABR78251.1| GTP-binding protein EngA [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238548284|dbj|BAH64635.1| GTP-binding protein EngA [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259042357|gb|EEW43377.1| ribosome-associated GTPase EngA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535310|gb|EGF61796.1| ribosome biogenesis GTPase Der [Klebsiella sp. MS 92-3]
          Length = 492

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 206 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKR 265

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D+VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 266 GKITDVVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 301



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L +
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFM 88


>gi|56480123|ref|NP_708350.2| GTP-binding protein EngA [Shigella flexneri 2a str. 301]
 gi|161984887|ref|YP_408907.2| GTP-binding protein EngA [Shigella boydii Sb227]
 gi|56383674|gb|AAN44057.2| putative GTP-binding factor [Shigella flexneri 2a str. 301]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|30063903|ref|NP_838074.1| GTP-binding protein EngA [Shigella flexneri 2a str. 2457T]
 gi|110806442|ref|YP_689962.1| GTP-binding protein EngA [Shigella flexneri 5 str. 8401]
 gi|123146827|sp|Q0T208|DER_SHIF8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|30042158|gb|AAP17884.1| putative GTP-binding factor [Shigella flexneri 2a str. 2457T]
 gi|110615990|gb|ABF04657.1| putative GTP-binding factor [Shigella flexneri 5 str. 8401]
 gi|281601913|gb|ADA74897.1| GTP-binding protein engA [Shigella flexneri 2002017]
 gi|313650997|gb|EFS15397.1| small GTP-binding domain protein [Shigella flexneri 2a str. 2457T]
 gi|332754198|gb|EGJ84566.1| small GTP-binding domain protein [Shigella flexneri 4343-70]
 gi|332755561|gb|EGJ85925.1| small GTP-binding domain protein [Shigella flexneri K-671]
 gi|332756305|gb|EGJ86656.1| small GTP-binding domain protein [Shigella flexneri 2747-71]
 gi|332766344|gb|EGJ96554.1| small GTP-binding domain protein [Shigella flexneri 2930-71]
 gi|333001904|gb|EGK21470.1| small GTP-binding domain protein [Shigella flexneri K-218]
 gi|333016427|gb|EGK35758.1| small GTP-binding domain protein [Shigella flexneri K-304]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|193068430|ref|ZP_03049393.1| ribosome-associated GTPase EngA [Escherichia coli E110019]
 gi|192958382|gb|EDV88822.1| ribosome-associated GTPase EngA [Escherichia coli E110019]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|194432132|ref|ZP_03064421.1| ribosome-associated GTPase EngA [Shigella dysenteriae 1012]
 gi|194419661|gb|EDX35741.1| ribosome-associated GTPase EngA [Shigella dysenteriae 1012]
 gi|332089695|gb|EGI94796.1| small GTP-binding domain protein [Shigella dysenteriae 155-74]
          Length = 490

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|257465498|ref|ZP_05629869.1| GTP-binding protein EngA [Actinobacillus minor 202]
 gi|257451158|gb|EEV25201.1| GTP-binding protein EngA [Actinobacillus minor 202]
          Length = 510

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+ 
Sbjct: 223 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQHYTIIDTAGVRKR 282

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +++A+++LL   I++++ IS
Sbjct: 283 GKVNLAVEKFSVIKTLQAIQDANVVLLT--IDAREGIS 318



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIGGYDFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFL 88


>gi|253996245|ref|YP_003048309.1| GTP-binding protein EngA [Methylotenera mobilis JLW8]
 gi|253982924|gb|ACT47782.1| small GTP-binding protein [Methylotenera mobilis JLW8]
          Length = 484

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L NAL  ++  I  D PGTTRD + IDL+  G    + DTAG+R+ 
Sbjct: 181 KVAIVGRPNVGKSTLVNALLGEERVIAYDEPGTTRDSIHIDLEKNGKHYTLIDTAGVRKR 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +E A++++L+
Sbjct: 241 GRVFEAIEKFSVIKTIQAIEEANVVILV 268



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 10/105 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISDTAGIR 278
           IV++G  N GKS+LFN L K   A+V D+PG TRD      I    + YLV   DT G  
Sbjct: 5   IVLVGRPNVGKSTLFNRLTKTRDALVADLPGLTRDRHYGRGIGAS-QPYLV--VDTGGFE 61

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322
             TD  + K   K+T   ++ AD I+ L  ++ ++ +S P++++ 
Sbjct: 62  PHTDSGILKAMAKQTLQAIDEADAIIFL--VDGRQGVS-PQDMEI 103


>gi|261880032|ref|ZP_06006459.1| ribosome-associated GTPase EngA [Prevotella bergensis DSM 17361]
 gi|270333272|gb|EFA44058.1| ribosome-associated GTPase EngA [Prevotella bergensis DSM 17361]
          Length = 437

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSSL NA   +D  IVT+I GTTRD +    D  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSLVNAFIGEDRHIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRK 236

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
           + + E      + R+   +EN+D+ +L+
Sbjct: 237 NKVTEDLEFYSVMRSIRAIENSDVCILM 264



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+DI GTTRD      +  G    I DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTRTRHAIVSDIAGTTRDRQYGKCNWNGREFSIVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DDI E    ++  +  + ADLIL L ++ +
Sbjct: 65  DDIFEDAIRQQVRIASDEADLILFLVDVET 94


>gi|269118862|ref|YP_003307039.1| small GTP-binding protein [Sebaldella termitidis ATCC 33386]
 gi|268612740|gb|ACZ07108.1| small GTP-binding protein [Sebaldella termitidis ATCC 33386]
          Length = 440

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           I +LG  NAGKSSL N +  K+ +IV+DI GTTRD +  D   +    +I DTAGIR   
Sbjct: 178 IAVLGRPNAGKSSLVNKILNKERSIVSDIAGTTRDSIDSDFRYKNRKYRIIDTAGIRRKS 237

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           + DD +E   + R    +  AD+ +L+
Sbjct: 238 KIDDSIEYYSVLRAIKAINRADVCVLM 264



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L  + ++IV D+PG TRD L  D++  G    + DT G+  +T
Sbjct: 5   VAIVGRPNVGKSTLFNKLIGERLSIVKDVPGVTRDRLYRDVEWSGKEFTLVDTGGLEPKT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D +  +   +  + ++ AD+++ L
Sbjct: 65  QDFIMSKIKDQAQVAIDEADVVVFL 89


>gi|220906981|ref|YP_002482292.1| GTP-binding protein EngA [Cyanothece sp. PCC 7425]
 gi|254783149|sp|B8HQE1|DER_CYAP4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|219863592|gb|ACL43931.1| small GTP-binding protein [Cyanothece sp. PCC 7425]
          Length = 453

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL NA+  +  AIV+ I GTTRD +   ++ +G   ++ DTAGIR+  
Sbjct: 180 VAIVGRPNVGKSSLLNAVVGEQRAIVSPISGTTRDAIDTLVERDGQRYRLIDTAGIRKQK 239

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
           ++    E  GI R F  ++ A+++LL+
Sbjct: 240 NVDYGPEFFGINRAFKAIQRAEVVLLV 266



 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + I+G  N GKS+L N L  + VAIV D PG TRD
Sbjct: 6   VAIVGRPNVGKSTLVNRLTGERVAIVHDQPGVTRD 40


>gi|29840678|ref|NP_829784.1| GTP-binding protein EngA [Chlamydophila caviae GPIC]
 gi|33301057|sp|Q821L7|DER_CHLCV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|29835028|gb|AAP05662.1| GTP-binding protein [Chlamydophila caviae GPIC]
          Length = 474

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 14/144 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           +I ILG  N GKSSLFN + K+ +AIV    GTTRD L  ++      V++ DT G+ ++
Sbjct: 3   RIAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWSVPVQVIDTGGVDKD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL 331
           ++D  +K   K+       AD++LL+ +I            ++  P N   I +  K+D 
Sbjct: 63  SEDHFQKHIYKQALAGANEADILLLVVDIRCGITEQDAELAKMLLPLNKPLILVANKAD- 121

Query: 332 YSTYTEEYDHLISSFTGEGLEELI 355
             T+ +E  H I      G+ E++
Sbjct: 122 --TFKDE--HRIHELYKLGISEIL 141



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSS+ N L  ++  I+ ++PGTTRD + I            DTAG+R+ 
Sbjct: 213 KIALIGRPNVGKSSIINGLLNEERCIIDNVPGTTRDNVDILYSHNDRSYLFIDTAGLRKM 272

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E     RT   +  AD+ LL+
Sbjct: 273 KSVKNSIEWISSSRTEKAIARADVCLLV 300


>gi|255505344|ref|ZP_05345588.3| ribosome-associated GTPase EngA [Bryantella formatexigens DSM
           14469]
 gi|255268481|gb|EET61686.1| ribosome-associated GTPase EngA [Bryantella formatexigens DSM
           14469]
          Length = 442

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 56/88 (63%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA ++++IV D PG TRD +  D++   Y   + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGENISIVKDTPGVTRDRIYADVEWLNYQFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            D++  +  ++  + ++ AD+I+ + ++
Sbjct: 66  SDVILSQMREQAQIAIDTADVIIFMVDV 93



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSS+ N L  ++  IV+DI GTTRD +   +   G      DTAG+R  
Sbjct: 179 RIAVVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAIDTAITWGGREYVFIDTAGLRRK 238

Query: 281 DDIVEK 286
           + I E+
Sbjct: 239 NKIKEE 244


>gi|187731692|ref|YP_001881302.1| GTP-binding protein EngA [Shigella boydii CDC 3083-94]
 gi|238691721|sp|B2TXT6|DER_SHIB3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|187428684|gb|ACD07958.1| ribosome-associated GTPase EngA [Shigella boydii CDC 3083-94]
          Length = 490

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|1518044|gb|AAB62738.1| ThdF protein [Borrelia burgdorferi]
          Length = 140

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 17/137 (12%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRILDKG 64
           I A++T  L SA+ +IR SG S       I K  K F   ++L    G     G ILD  
Sbjct: 11  IVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALNSASGNTIHYGYILDSE 64

Query: 65  -------LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
                  +++   +P+SFTG+D+ E   HG +  +  I++   K    R+A PGEF+ RA
Sbjct: 65  NGCKVDEVVVCLYAPKSFTGQDAIEVMAHGSVIGIKKIIDLFLK-SGFRMAEPGEFTLRA 123

Query: 118 FENGKIDLLEAESLADL 134
           F   KIDL +AE++ ++
Sbjct: 124 FLAKKIDLTKAEAIHEI 140


>gi|238797968|ref|ZP_04641458.1| GTP-binding protein engA [Yersinia mollaretii ATCC 43969]
 gi|238718173|gb|EEQ09999.1| GTP-binding protein engA [Yersinia mollaretii ATCC 43969]
          Length = 495

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324
           D VE +   ++ L +E AD++L +               + + S+++ +F      D I 
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358
             T + D YS    E  H I++  G G+ +LI  +
Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMTRDEREYVLIDTAGVRKR 268

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+++++LL+  I+++  IS
Sbjct: 269 GKVTETVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 304


>gi|289578647|ref|YP_003477274.1| ribosome-associated GTPase EngA [Thermoanaerobacter italicus Ab9]
 gi|289528360|gb|ADD02712.1| ribosome-associated GTPase EngA [Thermoanaerobacter italicus Ab9]
          Length = 439

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N +  ++  IV+DIPGTTRD +      +G    + DTAGIR  
Sbjct: 178 KIAVIGRPNVGKSSLVNKILGEERVIVSDIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  + R    +E +D+ LL+
Sbjct: 238 SRISESIERYSVLRALTAIERSDICLLM 265



 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+LFN +  K ++IV D PG TRD +  + +       + DT G+  + 
Sbjct: 6   VSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRICGNAEWLNKKFILVDTGGLDPDA 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+  +   +    +E +++IL L
Sbjct: 66  EDIIFSKVRLQVEAAIEASEVILFL 90


>gi|331005663|ref|ZP_08329030.1| GTP-binding protein EngA [gamma proteobacterium IMCC1989]
 gi|330420521|gb|EGG94820.1| GTP-binding protein EngA [gamma proteobacterium IMCC1989]
          Length = 482

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  +D  +V D  GTTRD + I+ +  G    I DTAGIR  
Sbjct: 192 KIAIVGRPNVGKSTLVNRMLGEDRVVVYDEAGTTRDSIYINYERHGKPYTIIDTAGIRRR 251

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
            +I   VEK  I +T   +E+A++++LL
Sbjct: 252 KNISLTVEKFSIVKTLQSIEDANVVVLL 279



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L ++  AIV D  G TRD    ++  E       DT G+   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRRRDAIVADFAGLTRDRQYGEVIWEERRFLFVDTGGLSGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++    +++ L +E ADL+L +
Sbjct: 65  EGIDSAMAEQSLLAIEEADLVLFM 88


>gi|240949663|ref|ZP_04753998.1| GTP-binding protein EngA [Actinobacillus minor NM305]
 gi|240295921|gb|EER46597.1| GTP-binding protein EngA [Actinobacillus minor NM305]
          Length = 510

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R  
Sbjct: 223 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQHYTIIDTAGVRRR 282

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +++A+++LL   I++++ IS
Sbjct: 283 GKVNLAVEKFSVIKTLQAIQDANVVLLT--IDAREGIS 318



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIGGYDFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFL 88


>gi|297544868|ref|YP_003677170.1| ribosome-associated GTPase EngA [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842643|gb|ADH61159.1| ribosome-associated GTPase EngA [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 439

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N +  ++  IV+DIPGTTRD +      +G    + DTAGIR  
Sbjct: 178 KIAVIGRPNVGKSSLVNKILGEERVIVSDIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  + R    +E +D+ LL+
Sbjct: 238 SRISESIERYSVLRALTAIERSDICLLM 265



 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+LFN +  K ++IV D PG TRD +  + +       + DT G+  + 
Sbjct: 6   VSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRICGNAEWLNKKFILVDTGGLDPDA 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+  +   +    +E +++IL L
Sbjct: 66  EDIIFSKVRLQVEAAIEASEVILFL 90


>gi|242278504|ref|YP_002990633.1| GTP-binding protein EngA [Desulfovibrio salexigens DSM 2638]
 gi|259645870|sp|C6C0G0|DER_DESAD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|242121398|gb|ACS79094.1| small GTP-binding protein [Desulfovibrio salexigens DSM 2638]
          Length = 450

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI +LG  NAGKSS+ NAL  ++  IV+D+ GTTRD + +  +  G +    DTAG+R
Sbjct: 182 GLKIAMLGRPNAGKSSMVNALTGEERVIVSDVAGTTRDSVDVTFESGGKIYTFVDTAGVR 241

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305
              +I   +E+  + R       AD+ +++
Sbjct: 242 RRTNITDTIERFSVVRALRSSTKADITVMV 271



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           I ++G  N GKS+LFN L +K  AI  D+PG TRD +  + +  G    + DT G + E+
Sbjct: 5   IALIGRPNVGKSTLFNRLLRKKRAITHDMPGITRDRIYAEGNYNGVHYALIDTGGLVMES 64

Query: 281 DD 282
           D+
Sbjct: 65  DN 66


>gi|170757031|ref|YP_001782064.1| GTP-binding protein EngA [Clostridium botulinum B1 str. Okra]
 gi|229710728|sp|B1IIN2|DER_CLOBK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169122243|gb|ACA46079.1| ribosome-associated GTPase EngA [Clostridium botulinum B1 str.
           Okra]
          Length = 439

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D PG TRD +  + +   Y   + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+  +  ++  + +E A++I+ L
Sbjct: 66  EDIIVSQMRRQAQIAIEMANVIIFL 90



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I  +G  N GKSSL N L  ++  IV+DIPGTTRD +   +D E     + DTAG+R   
Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTEFGEFTLIDTAGLRRKS 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   +E+  + RT+  +E AD+ +L+
Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILM 265


>gi|284929084|ref|YP_003421606.1| ribosome-associated GTPase EngA [cyanobacterium UCYN-A]
 gi|284809543|gb|ADB95248.1| ribosome-associated GTPase EngA [cyanobacterium UCYN-A]
          Length = 452

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL NA   +  AIV+ I GTTRDV+   ++ +G + ++ DTAGIR   
Sbjct: 179 VSIVGRPNVGKSSLLNAFLGEKRAIVSPIAGTTRDVIDTIVERKGKVYRLVDTAGIRRKK 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
           ++    E   I R F  +  AD++LL+
Sbjct: 239 NVEYGAEFFSINRAFKAIRRADVVLLV 265



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N LAK   AIV D PG TRD +        +   + DT G+   D
Sbjct: 6   VAVIGRPNVGKSTLVNRLAKNRQAIVHDEPGITRDRVYRQAFWRTHDFLVVDTGGLVFND 65

Query: 282 D 282
           +
Sbjct: 66  N 66


>gi|239831251|ref|ZP_04679580.1| small GTP-binding protein [Ochrobactrum intermedium LMG 3301]
 gi|239823518|gb|EEQ95086.1| small GTP-binding protein [Ochrobactrum intermedium LMG 3301]
          Length = 489

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 24/165 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 8   GFTVAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 67

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326
           E  +D +E     +T   ++ AD+IL +  +++K  ++ P +  F           + + 
Sbjct: 68  EAANDSLEARMRAQTEAAIQEADVILFV--VDAKNGLT-PTDSTFAEVVRRSGKPVVLVA 124

Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
            K++     +  YD           IS+  G+G+ +L + I  +L
Sbjct: 125 NKAEARGAQSGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL 169



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N +  +D  +     G TRD +++D +     +K+ DTAG+R  
Sbjct: 219 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISVDWEWRDRKIKLFDTAGLRRK 278

Query: 281 DDIVEK 286
             + EK
Sbjct: 279 SRVQEK 284


>gi|306820449|ref|ZP_07454085.1| ribosome-associated GTPase EngA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551524|gb|EFM39479.1| ribosome-associated GTPase EngA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 439

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  NAGKSS+ NA+  ++  IV+ I GTTRD +    +++G      DTAGIR+ 
Sbjct: 177 KVAIVGRPNAGKSSILNAIIGEERTIVSPIAGTTRDAIDEKCEIDGKSYTFIDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + I   +EK  + R++  +E  D++L++
Sbjct: 237 NKIFDNIEKYSVLRSYTAIERCDVVLMV 264



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L  + ++IV D PG TRD +  D++   Y   + DT GI  +T
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGEKISIVEDTPGVTRDRIFADVNWLTYTFTLIDTGGIETDT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           ++++     K+  + ++ +D+I+ +
Sbjct: 65  EEMIPAMMRKQAQVAIDMSDVIMFV 89


>gi|153007833|ref|YP_001369048.1| GTP-binding protein EngA [Ochrobactrum anthropi ATCC 49188]
 gi|166225832|sp|A6WW65|DER_OCHA4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|151559721|gb|ABS13219.1| small GTP-binding protein [Ochrobactrum anthropi ATCC 49188]
          Length = 483

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 24/165 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTVAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326
           E  +D +E     +T   ++ AD+IL +  +++K  ++ P +  F           + + 
Sbjct: 62  EAANDSLEARMRAQTEAAIQEADVILFV--VDAKNGLT-PTDSTFAEVVRRSGKPVVLVA 118

Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
            K++     +  YD           IS+  G+G+ +L + I  +L
Sbjct: 119 NKAEARGAQSGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL 163



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N +  +D  +     G TRD +++D +  G  +K+ DTAG+R  
Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISVDWEWRGRKIKLFDTAGLRRK 272

Query: 281 DDIVEK 286
             + EK
Sbjct: 273 SRVQEK 278


>gi|91792618|ref|YP_562269.1| GTP-binding protein EngA [Shewanella denitrificans OS217]
 gi|122968866|sp|Q12PT0|DER_SHEDO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|91714620|gb|ABE54546.1| Small GTP-binding protein domain [Shewanella denitrificans OS217]
          Length = 491

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ EG    + DTAG+R  
Sbjct: 201 KLAIIGKPNVGKSTLINRILGEERVVVYDAPGTTRDSIYIPMEREGREYVLIDTAGVRRR 260

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +  +++EK  + +T   VE+A+++LL+
Sbjct: 261 SKVHEVIEKFSVIKTLKAVEDANVVLLV 288



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E +  +++   +E AD++L L +  +
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFLTDARA 93


>gi|207342426|gb|EDZ70196.1| YMR023Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 214

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 100/215 (46%), Gaps = 41/215 (19%)

Query: 262 LDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320
           +++ GY V I DTAGIRE + D +E  GI R   +   +DL L + +     ++  P++I
Sbjct: 5   INVNGYKVIICDTAGIREKSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKL-LPEDI 63

Query: 321 ------------DFIFIGTKSDLYST--YTEEYDHL------------ISSFTGEGLEEL 354
                         I +  KSDL S    T+  + L            +S  T EG+E L
Sbjct: 64  LAHLSSKTFGNKRIIIVVNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESL 123

Query: 355 INKIKSILSNKFKKLPFS------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--A 406
           I    S L++ F+ L  S      +   KR    L   V Y        KD   DI+   
Sbjct: 124 I----STLTSNFESLSQSSADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLAT 179

Query: 407 ENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440
           ENLR AS  + KITG  + +E++LD +FSKFCIGK
Sbjct: 180 ENLRYASDGIAKITGQAIGIEEILDSVFSKFCIGK 214


>gi|319787003|ref|YP_004146478.1| ribosome-associated GTPase EngA [Pseudoxanthomonas suwonensis 11-1]
 gi|317465515|gb|ADV27247.1| ribosome-associated GTPase EngA [Pseudoxanthomonas suwonensis 11-1]
          Length = 465

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 82/162 (50%), Gaps = 17/162 (10%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-------NDISSHI-----S 208
           W+ KL      +   +D + EE V+   ++    D+L +        +D+ + +      
Sbjct: 106 WLRKLARPTLLVVNKIDGTFEEAVRGEFARYGFADMLAVSAAHRQGLDDLHAEVLERLPE 165

Query: 209 QGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +G + E+  +    +I  +G  N GKS+L N +  ++  I +++PGTTRD + +DL+ +G
Sbjct: 166 EGSVEELDNDPDRLRIAFVGRPNVGKSTLVNRVLGEERMIASEVPGTTRDSIAVDLERDG 225

Query: 267 YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
            L ++ DTAGIR    I   VEK  + +T   +E   + +L+
Sbjct: 226 RLYRLIDTAGIRRKGKIEEAVEKFSVVKTLQAIERCQVAVLM 267



 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+LFNAL +   A+V D PG TRD    V  +D D    LV   DT GI
Sbjct: 5   VALVGRPNVGKSTLFNALTRSRDALVHDEPGVTRDRHYGVCRLDPDRPFLLV---DTGGI 61


>gi|170760623|ref|YP_001787836.1| GTP-binding protein EngA [Clostridium botulinum A3 str. Loch Maree]
 gi|238688523|sp|B1KX71|DER_CLOBM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169407612|gb|ACA56023.1| ribosome-associated GTPase EngA [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 439

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D PG TRD +  + +   Y   + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+  +  ++  + +E A++I+ L
Sbjct: 66  EDIIVSQMRRQAQIAIEMANVIIFL 90



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I  +G  N GKSSL N L  ++  IV+DIPGTTRD +   +D E     + DTAG+R   
Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTEFGEFTLIDTAGLRRKS 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   +E+  + RT+  +E AD+ +L+
Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILM 265


>gi|311694388|gb|ADP97261.1| GTP-binding protein EngA [marine bacterium HP15]
          Length = 452

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +I ++G  N GKS+L N +  +D  +V D+PGTTRD + I  + +G    + DTAG+R
Sbjct: 155 GIRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYERQGSQYTLIDTAGVR 214

Query: 279 E---TDDIVEKEGIKRTFLEVENADLILLL 305
                 ++VEK  I +T   +++A +++L+
Sbjct: 215 RRKNVSEVVEKFSIIKTLQAIDDAHVVILV 244


>gi|183599734|ref|ZP_02961227.1| hypothetical protein PROSTU_03237 [Providencia stuartii ATCC 25827]
 gi|188021993|gb|EDU60033.1| hypothetical protein PROSTU_03237 [Providencia stuartii ATCC 25827]
          Length = 490

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 205 KLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 264

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 265 GKITETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 300



 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 25/157 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFI- 323
           + VE     ++   +E AD++L +               K + S+K+ ++      D I 
Sbjct: 65  EGVETHMAAQSLQAIEEADVVLFMVDARAGLMPADEGIAKHLRSRKKKTYLVANKTDGID 124

Query: 324 ---FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
               IG   D YS    E  H I++  G G+ +LI K
Sbjct: 125 ADSVIG---DFYSLGLGEI-HPIAASHGRGVTQLIEK 157


>gi|315637145|ref|ZP_07892368.1| ribosome-associated GTPase EngA [Arcobacter butzleri JV22]
 gi|315478681|gb|EFU69391.1| ribosome-associated GTPase EngA [Arcobacter butzleri JV22]
          Length = 485

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 2/86 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSLFN +A K +AIV+D+ GTTRD+   ++++   +  + DT GI +T
Sbjct: 7   KIALIGQPNVGKSSLFNRIANKRIAIVSDMAGTTRDIRKHEIEILDRVGLLVDTGGIDDT 66

Query: 281 DDIVEKEGIKRTFLEV-ENADLILLL 305
           +D +    +KR  +E  + AD+IL +
Sbjct: 67  NDAI-FSNVKRKAIETAKEADIILFM 91



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 29/186 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI  +   + I+G  N GKSS+ NA+   + ++V+ I GTT D +    + +   +   D
Sbjct: 212 EIDESKINVAIIGRVNVGKSSILNAIVGAERSVVSPIAGTTIDPVDESFEYKEKQITFVD 271

Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSKKEIS-----FPKNIDFIFIG 326
           TAG+R    I  +EK  + RT   +E A++ L++  +++ +E++         +D   +G
Sbjct: 272 TAGLRRRGSIEGIEKYALMRTKEMLEKANMALVV--LDASRELTDLDEKIAGLVDEYGLG 329

Query: 327 T---------KSDLYSTYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKF 366
           T           D +    EE               +S+ TG  +E L +KI  I  N  
Sbjct: 330 TIIVLNKWDENMDTFQKIEEEIRRRFRFLSYAPIIAVSAKTGRSIERLKDKIIEIFDNYT 389

Query: 367 KKLPFS 372
           +++P S
Sbjct: 390 QRIPTS 395


>gi|293391945|ref|ZP_06636279.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952479|gb|EFE02598.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 510

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 51/231 (22%)

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           + D DFS EED               L  +++   +  K         KI I+G  N GK
Sbjct: 193 DEDFDFSNEEDTA------------LLDEELAQEQTPDK------KNIKIAIVGRPNVGK 234

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289
           S+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R+   +   VEK  +
Sbjct: 235 STLTNRILGEDRVVVYDLPGTTRDSIYIPMERDNQNYTLIDTAGVRKRGKVHLAVEKFSV 294

Query: 290 KRTFLEVENADLILLL---KEINSKKEISFPKNIDFI-------------FIGTKSDLYS 333
            +T   +++A+++LL+   +E  S +++S    + FI             + G  +++ +
Sbjct: 295 IKTLQAIQDANVVLLVIDARENISDQDLSL---LGFILNAGRSLVIVVNKWDGLDTEVKN 351

Query: 334 TYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               E D           H IS+  G G+  L + IK       +K+  S+
Sbjct: 352 RVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYECATQKMTTSM 402



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L G+   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHLAGHDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIEEADIVLFL 89


>gi|15828559|ref|NP_325919.1| GTP-binding protein EngA [Mycoplasma pulmonis UAB CTIP]
 gi|26006733|sp|Q98RC1|DER_MYCPU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|14089501|emb|CAC13261.1| GTP-BINDING PROTEIN [Mycoplasma pulmonis]
          Length = 435

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 91/163 (55%), Gaps = 27/163 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K V+IV D PG TRD +  +++  G   +I DT GI  +D
Sbjct: 10  VAIVGKPNVGKSTLFNRLVGKRVSIVYDQPGVTRDRIYENINWSGKNFRIIDTGGIVVSD 69

Query: 282 D-IVEKEGIKRTFLEVENADLILLL----KEI------------NSKKEISFPKN-IDFI 323
              VE+  I+   + +E +++IL +    +EI            NSKK++    N +D  
Sbjct: 70  QPFVEQIRIQAQ-IAIEESEIILFVIDGSEEITSDDLYIASILRNSKKKVLVLANKLD-- 126

Query: 324 FIGTKSDLYSTYT---EEYDHLISSFTGEGLEELINKIKSILS 363
               K++ YS Y+   E+Y + ISS  GEG+ E+++K+ ++++
Sbjct: 127 --NNKNEDYSIYSLGFEDY-YKISSVHGEGIGEVLDKVINLMN 166



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 5/99 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +KI ILG  NAGKSSL NAL K++ +IV++I GTTRD +   +++E     I DTAGI  
Sbjct: 176 FKIAILGKPNAGKSSLLNALTKQERSIVSEIAGTTRDSIKSTIEIEDQKFFIIDTAGINR 235

Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSKKEIS 315
              +VE      + R    ++ +DL +++  I++ +E+S
Sbjct: 236 KSKLVESVDHYALMRAMGSLDESDLSIII--IDATEELS 272


>gi|227498500|ref|ZP_03928646.1| small GTP-binding protein [Acidaminococcus sp. D21]
 gi|226903958|gb|EEH89876.1| small GTP-binding protein [Acidaminococcus sp. D21]
          Length = 403

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKSS+FN +  +  +IV+D+ GTTRD + + +  +G      DTAG+R  
Sbjct: 180 KVAIIGRPNVGKSSIFNDIIGQTRSIVSDVAGTTRDAIDVPVMKDGQTYLFIDTAGMRRK 239

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + D+ +EK  I RT   V+ +D++L++
Sbjct: 240 GKIDEPIEKYSIIRTLRAVDRSDVVLMV 267



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 7/88 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS+LFN  A   ++IV D PG TRD L  + +       + DT GI    
Sbjct: 6   VAIVGRPNVGKSTLFNIFADSRISIVEDTPGVTRDRLYAEAEWLDRRFMMVDTGGIEIAN 65

Query: 280 TDDIVE--KEGIKRTFLEVENADLILLL 305
           TD I    +E  K   + ++ AD+IL +
Sbjct: 66  TDSIAVSIREQAK---IAIKEADVILFV 90


>gi|167747191|ref|ZP_02419318.1| hypothetical protein ANACAC_01905 [Anaerostipes caccae DSM 14662]
 gi|317473608|ref|ZP_07932897.1| ribosome-associated GTPase EngA [Anaerostipes sp. 3_2_56FAA]
 gi|167654151|gb|EDR98280.1| hypothetical protein ANACAC_01905 [Anaerostipes caccae DSM 14662]
 gi|316898898|gb|EFV20923.1| ribosome-associated GTPase EngA [Anaerostipes sp. 3_2_56FAA]
          Length = 440

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA ++++IV D PG TRD +  D+    Y   + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGENISIVKDTPGVTRDRIYADISWLNYNFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            D++     ++  + +E AD+I+ L ++
Sbjct: 66  GDVILSRMREQAQIAIETADVIIFLVDV 93



 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  NAGKSS+ N +  ++  IV+D+ GTTRD +   +   G      DTAG+R  
Sbjct: 179 KIAIIGKPNAGKSSIINKMLGEERVIVSDVAGTTRDAIDTVIQKNGKEYVFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + I   +E+  + RT   VE  D+ +L+
Sbjct: 239 NKIKEDLERYSVIRTVSAVERCDVAVLV 266


>gi|150016018|ref|YP_001308272.1| GTP-binding protein EngA [Clostridium beijerinckii NCIMB 8052]
 gi|189037141|sp|A6LSI6|DER_CLOB8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|149902483|gb|ABR33316.1| small GTP-binding protein [Clostridium beijerinckii NCIMB 8052]
          Length = 438

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K ++IV D PG TRD +  + +   Y   + DT GI  E 
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLRYNFTMIDTGGIEPEN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+ K+  ++  + +E AD+I+ +
Sbjct: 66  NDIIIKQMRRQANIAIETADVIIFI 90



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N L  ++  IV+DIPGTTRD +   L+ E     + DTAG+R  
Sbjct: 178 RIAMIGKPNVGKSSLINKLLGEERVIVSDIPGTTRDSIDSHLETEEGKFILVDTAGLRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E+  + RT+  +E AD+ +L+
Sbjct: 238 SKVKEEIERYSVIRTYAAIERADVCILM 265


>gi|332519774|ref|ZP_08396238.1| ribosome-associated GTPase EngA [Lacinutrix algicola 5H-3-7-4]
 gi|332044333|gb|EGI80527.1| ribosome-associated GTPase EngA [Lacinutrix algicola 5H-3-7-4]
          Length = 435

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFDFNLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEIN 309
             +   +E   + R+   +E++D+ LL+ + N
Sbjct: 237 SKVKEDLEFYSVMRSVRAIEHSDVCLLVVDAN 268



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      D  G    + DT G ++ +
Sbjct: 5   VAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGKEFSLIDTGGYVKGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DDI E E  K+  L +E AD I+ + ++ +
Sbjct: 65  DDIFEAEIDKQVELAIEEADAIIFMVDVEA 94


>gi|289423237|ref|ZP_06425048.1| small GTP-binding protein [Peptostreptococcus anaerobius 653-L]
 gi|289156337|gb|EFD04991.1| small GTP-binding protein [Peptostreptococcus anaerobius 653-L]
          Length = 417

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 2/93 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   IV+LG  N+GKSS+FN L  +D +IV D  GTT D +   ++L  Y  VKI DTAG
Sbjct: 7   NRKNIVLLGRRNSGKSSIFNLLIDQDKSIVADYLGTTTDPVYHMMELLPYGPVKIVDTAG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I + + +V ++ + +T LE+E+ADL++ + + N
Sbjct: 67  I-DDEGLVGQKRVDKTRLEIEDADLLVYVIDAN 98


>gi|255533659|ref|YP_003094031.1| small GTP-binding protein [Pedobacter heparinus DSM 2366]
 gi|255346643|gb|ACU05969.1| small GTP-binding protein [Pedobacter heparinus DSM 2366]
          Length = 433

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSL NAL  K+  IVT I GTTRD + I  +  G+     DTAG+R+ 
Sbjct: 175 KITIVGRPNVGKSSLINALMGKERNIVTPIAGTTRDSIHIHYNQFGHEFMFIDTAGLRKK 234

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + RT   +E AD+++L+
Sbjct: 235 TKVKENIEFYSVMRTIKALEEADVVILM 262



 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           I I+G  N GKS+LFN L +   AIV D  G TRD      +       + DT G +  +
Sbjct: 5   IAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYGVAEWTDKQFTVIDTGGYVANS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN----------------SKKEISFPKN-IDFI 323
           +D+ E    ++  + +E A ++L + ++                 SKK +    N +D  
Sbjct: 65  EDVFEAAIREQVIIAIEEATVLLFMVDVTTGITDLDDEIAQLLRRSKKPVFIVVNKVDNT 124

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
            +   + ++  +     H ISS TG G  +L++++
Sbjct: 125 QLQNDAAVFYGFGLGEIHPISSMTGSGTGDLLDEV 159


>gi|254519255|ref|ZP_05131311.1| small GTP-binding protein [Clostridium sp. 7_2_43FAA]
 gi|226913004|gb|EEH98205.1| small GTP-binding protein [Clostridium sp. 7_2_43FAA]
          Length = 438

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N L  ++  IV+DIPGTTRD +   L+ E     + DTAG+R  
Sbjct: 178 RIAMIGKPNVGKSSLINRLLGEERLIVSDIPGTTRDSIDSALETEQGKFILVDTAGLRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E+  + RT+  +E AD+ +L+
Sbjct: 238 SKVKEEIERYSVIRTYAAIERADVCILM 265



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +    +   Y   + DT GI  E 
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGQRISIVQDTPGVTRDRVYAQAEWLNYNFTMIDTGGIEPER 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+ K+  ++  + +E AD+I+ +
Sbjct: 66  EDIIVKQMRRQANIAIETADVIIFV 90


>gi|157737421|ref|YP_001490104.1| GTP-binding protein EngA [Arcobacter butzleri RM4018]
 gi|157699275|gb|ABV67435.1| GTP-binding protein [Arcobacter butzleri RM4018]
          Length = 485

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 2/86 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSLFN +A K +AIV+D+ GTTRD+   ++++   +  + DT GI +T
Sbjct: 7   KIALIGQPNVGKSSLFNRIANKRIAIVSDMAGTTRDIRKHEIEILDRVGLLVDTGGIDDT 66

Query: 281 DDIVEKEGIKRTFLEV-ENADLILLL 305
           +D +    +KR  +E  + AD+IL +
Sbjct: 67  NDAI-FSNVKRKAIETAKEADIILFM 91



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 29/178 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSS+ NA+   + ++V+ I GTT D +    + +   +   DTAG+R   
Sbjct: 220 VAIIGRVNVGKSSVLNAIVGAERSVVSPIAGTTIDPVDESFEYKEKQITFVDTAGLRRRG 279

Query: 282 DI--VEKEGIKRTFLEVENADLILLLKEINSKKEIS-----FPKNIDFIFIGT------- 327
            I  +EK  + RT   +E A++ L++  +++ +E++         +D   +GT       
Sbjct: 280 SIEGIEKYALMRTKEMLEKANMALVV--LDASRELTDLDEKIAGLVDEYGLGTIIVLNKW 337

Query: 328 --KSDLYSTYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               D +    EE               +S+ TG  +E L +KI  I  N  +++P S
Sbjct: 338 DENMDTFQKIEEEIRRRFRFLSYAPIIAVSAKTGRSIERLKDKIIEIFDNYTQRIPTS 395


>gi|125973539|ref|YP_001037449.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405]
 gi|256003357|ref|ZP_05428348.1| small GTP-binding protein [Clostridium thermocellum DSM 2360]
 gi|281417743|ref|ZP_06248763.1| ribosome-associated GTPase EngA [Clostridium thermocellum JW20]
 gi|166224331|sp|A3DE77|DER_CLOTH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|125713764|gb|ABN52256.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405]
 gi|255992647|gb|EEU02738.1| small GTP-binding protein [Clostridium thermocellum DSM 2360]
 gi|281409145|gb|EFB39403.1| ribosome-associated GTPase EngA [Clostridium thermocellum JW20]
 gi|316940220|gb|ADU74254.1| ribosome-associated GTPase EngA [Clostridium thermocellum DSM 1313]
          Length = 440

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKSSL N +  ++  IV+DIPGTTRD +   ++ E       DTAGIR  
Sbjct: 179 KVAVVGKPNVGKSSLINRILGEERVIVSDIPGTTRDAIDTFVENEHGKFVFIDTAGIRRQ 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   +EK  I R++  +E AD+ L+L  I++K+ ++
Sbjct: 239 SKINEKIEKYSIIRSWTAIERADVCLIL--IDAKEGVT 274



 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 19/156 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+ FN L  K ++IV D PG TRD +  +++       + DT GI   +
Sbjct: 6   VAVVGRPNVGKSTFFNYLVGKRISIVEDTPGVTRDRIYAEVEWRNKKFTLIDTGGIEPYS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS--FPKNIDFIFIGTK----- 328
           +D + ++  ++  + +E AD+I+ + ++      S KE++    K    + +        
Sbjct: 66  EDKIMQQMKRQAEIAIETADIIIFMVDVKDGVTASDKEVATLLRKTKKPVIVAVNKVDKI 125

Query: 329 ----SDLYSTYTEEYDHL--ISSFTGEGLEELINKI 358
               +D Y  Y   +  L  ISS  G G+ +L+++I
Sbjct: 126 GELPADFYEFYNLGFGELMAISSIHGLGMGDLLDEI 161


>gi|331658656|ref|ZP_08359600.1| ribosome-associated GTPase EngA [Escherichia coli TA206]
 gi|331054321|gb|EGI26348.1| ribosome-associated GTPase EngA [Escherichia coli TA206]
          Length = 396

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 277 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 312



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 18  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           D VE    +++ L +E AD++L + +  S
Sbjct: 78  DGVETRMAEQSLLAIEEADVVLFMVDARS 106


>gi|264679419|ref|YP_003279326.1| small GTP-binding protein [Comamonas testosteroni CNB-2]
 gi|262209932|gb|ACY34030.1| small GTP-binding protein [Comamonas testosteroni CNB-2]
          Length = 446

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            GE  +   ++ + G  NAGKS+L N    ++  +  D+PGTTRD +T+  +  G   ++
Sbjct: 173 FGEEDQKPVRLAVAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAITVPFERNGQKFEL 232

Query: 272 SDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
            DTAG+R    +   +EK  + +T   +E A+++LLL
Sbjct: 233 IDTAGLRRKGKVFEAIEKFSVVKTLQAIEGANVVLLL 269



 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD          +   + DT G   + 
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
              + KE  K+T   V  AD+++ +
Sbjct: 65  SRGIFKEMAKQTQQAVAEADVVIFV 89


>gi|254283197|ref|ZP_04958165.1| GTP-binding protein EngA [gamma proteobacterium NOR51-B]
 gi|219679400|gb|EED35749.1| GTP-binding protein EngA [gamma proteobacterium NOR51-B]
          Length = 472

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G ++  +G  N GKS+L N L   D  +V D PGTTRD + ID +  G    + DTAG+
Sbjct: 174 GGIRVAAIGRPNVGKSTLINRLLGDDRVVVFDEPGTTRDSIYIDFERRGQAYTLIDTAGV 233

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R   ++   VEK  I +T   + +A +++LL
Sbjct: 234 RRRKNVRETVEKFSIVKTLKAIADAHVVILL 264



 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V ++ G TRD    D  +      + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNQLTRTRDALVANLSGLTRDRQYGDGKVGAVPYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     ++   +E AD++LL+
Sbjct: 65  SGIDAAMAGQSQTAIEEADIVLLM 88


>gi|167749166|ref|ZP_02421293.1| hypothetical protein EUBSIR_00117 [Eubacterium siraeum DSM 15702]
 gi|167657844|gb|EDS01974.1| hypothetical protein EUBSIR_00117 [Eubacterium siraeum DSM 15702]
 gi|291530430|emb|CBK96015.1| ribosome-associated GTPase EngA [Eubacterium siraeum 70/3]
          Length = 439

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N +A +   IV++I GTTRD +   ++ +G    + DTAGIR  
Sbjct: 179 KVAVIGKPNAGKSSLVNKIAGEQRMIVSNIAGTTRDAVDTVIERDGQEYVLIDTAGIRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + R ++ V+ AD+ +++
Sbjct: 239 SKVNEQIEKYSVLRAYMAVDRADVCVIM 266



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN +  K ++IV D PG TRD +    +  G    + DT GI  ++
Sbjct: 5   VAVVGRPNVGKSTLFNRIVGKRMSIVDDTPGVTRDRIYAKAEWLGKEFMLVDTGGIEPDS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D++  +   +  L ++ AD+I+ + ++ S
Sbjct: 65  KDVILSQMRMQAQLAIDKADVIIFVTDVTS 94


>gi|122700829|emb|CAL88003.1| GTPase [Helicobacter pylori]
 gi|122700843|emb|CAL88010.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|261867584|ref|YP_003255506.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412916|gb|ACX82287.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 510

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 51/231 (22%)

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           + D DFS EED               L  +++   +  K         KI I+G  N GK
Sbjct: 193 DEDFDFSNEEDTA------------LLDEELAQEQTPDK------KNIKIAIVGRPNVGK 234

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289
           S+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R+   +   VEK  +
Sbjct: 235 STLTNRILGEDRVVVYDLPGTTRDSIYIPMERDNQDYTLIDTAGVRKRGKVHLAVEKFSV 294

Query: 290 KRTFLEVENADLILLL---KEINSKKEISFPKNIDFI-------------FIGTKSDLYS 333
            +T   +++A+++LL+   +E  S +++S    + FI             + G  +++ +
Sbjct: 295 IKTLQAIQDANVVLLVIDARENISDQDLSL---LGFILNAGRSLVIVVNKWDGLDTEVKN 351

Query: 334 TYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               E D           H IS+  G G+  L + IK       +K+  S+
Sbjct: 352 RVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYECATQKMTTSM 402



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L G+   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHLAGHDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE++  +++ L +E AD++L L
Sbjct: 66  EGVEEKMAEQSLLAIEEADIVLFL 89


>gi|240047358|ref|YP_002960746.1| GTP-binding protein EngA [Mycoplasma conjunctivae HRC/581]
 gi|239984930|emb|CAT04923.1| GTP-binding protein EngA [Mycoplasma conjunctivae]
          Length = 435

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 15/127 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N +K+ I+G  NAGKS+L N L K + +I ++IPGTTRD ++    +  + ++I DTAGI
Sbjct: 169 NLFKLAIIGKPNAGKSTLLNKLVKSERSITSNIPGTTRDSVSSKWVVNNHELEIVDTAGI 228

Query: 278 RETDDIVEK---EGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIF 324
                +VE      + R F  ++ ADL L++  +++ + +S          F KN   I 
Sbjct: 229 IRKSKVVESVDFYALLRAFNSLDEADLSLVI--VDASQPLSHFDSRLSGYAFEKNKPIIL 286

Query: 325 IGTKSDL 331
           +  K DL
Sbjct: 287 VINKWDL 293



 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 31/165 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + ++G  N GKS+LFN +  K  +I   +PG TRD +       G    I DT GI    
Sbjct: 5   VALIGKPNVGKSTLFNKIIGKKKSITDSMPGVTRDRIYAKTTWLGKTFNIIDTGGIEIEN 64

Query: 278 RETDDIVEKEGIKRTFLEVENADLILL-----------------LKEINSKKEISFPKNI 320
           R   D+++ +    + + +E A +I+L                 L   ++KK +     +
Sbjct: 65  RTFQDLIQMQ----SKVAIEEAQVIVLVLDGQNAIDSDDYYVVDLLRKSNKKVLVVANKL 120

Query: 321 DFIFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILS 363
           +    G KS   S Y+  ++H+  IS+  GEG+ +L+++I + +S
Sbjct: 121 E----GRKSFDTSIYSLGFEHIFPISAIHGEGVGDLLDEIIANMS 161


>gi|319406081|emb|CBI79711.1| GTP-binding protein [Bartonella sp. AR 15-3]
          Length = 477

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 29/186 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  + +A+V D PG TRD        +     + DTAG+ ++D
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRRIHSAKFQDLHFNVIDTAGLEKSD 64

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKS 329
           +  +E     +T + +  ADLIL +  +++K  I+ P ++DF           + +  KS
Sbjct: 65  NHTLEGRMRSQTKIAIAEADLILFV--LDAKSGIT-PSDLDFSSLIRKSGKPIVLVANKS 121

Query: 330 DLYSTYTEEYDH---------LISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRH 379
           +  +    EY+          LIS+  G+GL +L + I  +I ++K     F++   K  
Sbjct: 122 ESKAAIGGEYEAWSLGLGEPCLISAEHGQGLSDLRDAIVAAIGTDKI----FNLRREKEK 177

Query: 380 LYHLSQ 385
           +Y  +Q
Sbjct: 178 VYTAAQ 183



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKS+L N++  +D  +     G TRD +++D +     +K+ DTAG+R  
Sbjct: 208 RIAIVGRPNTGKSTLINSMLGQDRLLTGSEAGITRDSVSVDWEWNNRRIKLFDTAGLRRK 267

Query: 281 DDIVEK 286
             + EK
Sbjct: 268 SKVQEK 273


>gi|269114942|ref|YP_003302705.1| GTP-binding protein engA [Mycoplasma hominis]
 gi|268322567|emb|CAX37302.1| GTP-binding protein engA [Mycoplasma hominis ATCC 23114]
          Length = 441

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 68/105 (64%), Gaps = 6/105 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ +LG +N GKS+L N LA ++ +IV+++ GTTRD ++  + + G + ++ DTAGI+ 
Sbjct: 175 FKLALLGKTNVGKSTLLNTLANEERSIVSNVEGTTRDSVSSLIKINGEIFEVVDTAGIKR 234

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS-FPKNI 320
              +   VE   + R    +E+A+L LL+  +++ +E+S F +N+
Sbjct: 235 KSKLTESVEHYALMRANQSIEDANLCLLV--LDATEEVSHFSQNV 277



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++RN   + I+G  N GKS+LFN +  K  +IV D PG TRD L  D    G   ++ DT
Sbjct: 1   MMRNNI-VAIIGKPNVGKSTLFNKIINKRKSIVYDTPGVTRDRLYEDAIWTGKKFRVVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI   D+  +K+   +  + ++ A++I+ L
Sbjct: 60  GGITIEDEDFKKQIKLQAQIAIDEANVIVFL 90


>gi|237745515|ref|ZP_04575995.1| GTP-binding protein engA [Oxalobacter formigenes HOxBLS]
 gi|229376866|gb|EEO26957.1| GTP-binding protein engA [Oxalobacter formigenes HOxBLS]
          Length = 445

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKS++ NAL  ++  I  D+PGTTRD + I  + +G    + DTAG+R+ 
Sbjct: 182 RLAVVGRPNVGKSTMINALLGEERVIAFDLPGTTRDAIEIPFERDGKHYTLVDTAGLRKR 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   +EK  + +T   +  A+++LLL  ++++++IS
Sbjct: 242 GKVFQAIEKFSVVKTLQAISEANVVLLL--LDAQQDIS 277



 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRAALVADYPGLTRDRHYGEGRMGDRPFLVIDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V KEG+     K+T   V  +D+++ +
Sbjct: 61  EPVVKEGVLQEMAKQTKQAVAESDVVVFM 89


>gi|114562298|ref|YP_749811.1| GTP-binding protein EngA [Shewanella frigidimarina NCIMB 400]
 gi|122300418|sp|Q085U2|DER_SHEFN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|114333591|gb|ABI70973.1| small GTP-binding protein [Shewanella frigidimarina NCIMB 400]
          Length = 488

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I +  EG    + DTAG+R  
Sbjct: 201 KLAIIGKPNVGKSTLINRILGEERVVVYDEPGTTRDSIYIPMSREGREYVLIDTAGVRRR 260

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            + ++++EK  + +T   VE+A+++LL+  I++++ I+
Sbjct: 261 SKVNEVIEKFSVIKTLKAVEDANVVLLV--IDAREGIA 296



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLAGYEFIVVDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E +  +++   +E AD++L + +  +
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARA 93


>gi|108563245|ref|YP_627561.1| GTP-binding protein EngA [Helicobacter pylori HPAG1]
 gi|122980493|sp|Q1CT35|DER_HELPH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|107837018|gb|ABF84887.1| GTP-binding protein-like protein [Helicobacter pylori HPAG1]
          Length = 461

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 25/178 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             I  +EK  ++RT   +E + + LL+ ++++           ++   ++  I I  K D
Sbjct: 261 SKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           + Y+ Y E            EY  +I  S      ++E+ +KI  +     K++P S+
Sbjct: 321 IRYAPYEEIMETLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSL 378


>gi|297617642|ref|YP_003702801.1| ribosome-associated GTPase EngA [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145479|gb|ADI02236.1| ribosome-associated GTPase EngA [Syntrophothermus lipocalidus DSM
           12680]
          Length = 442

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 29/179 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N L  ++  IV++IPGTTRD +       G    + DTAGIR  
Sbjct: 178 RIALVGRPNVGKSSLLNRLIGEERVIVSEIPGTTRDAIDTPFRYGGNRYVLIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLY----- 332
             I    E+  + R    VE +D++L++ +   +      K   F+    KS++      
Sbjct: 238 SRIKEPTERYSVLRALRAVERSDVVLIILDATERVTEQDKKIAGFVHEAGKSNIIIVNKW 297

Query: 333 ------STYTEEYDHL---------------ISSFTGEGLEELINKIKSILSNKFKKLP 370
                     +E+D L               IS+ TG+ ++++I  +  +    ++K+P
Sbjct: 298 DLVKKTERTMKEFDDLIREELKFLAYSPILYISALTGQRVKQVIEVVDFVAEQYWRKVP 356



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN +A    AIV D PG TRD +    +  G    + DT GIR E 
Sbjct: 6   VALVGRPNVGKSTLFNRMAGLRKAIVEDTPGVTRDRIYEQAEWAGREFIVVDTGGIRFEE 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            DI+  E  K++ L +E AD+I+++
Sbjct: 66  GDILAPEVKKQSELAIEEADVIVMV 90


>gi|253988871|ref|YP_003040227.1| GTP-binding protein EngA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780321|emb|CAQ83482.1| gtp-binding protein enga (double era-like domain protein)
           [Photorhabdus asymbiotica]
          Length = 499

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 214 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 273

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 274 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 309



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 28/169 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 10  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGIDGTE 69

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324
           D VE     ++ + +E AD++L +               K + S+++ +F      D I 
Sbjct: 70  DGVETHMAAQSLMAIEEADIVLFMVDARAGLMPADHAIAKHLRSREKATFLVANKTDGID 129

Query: 325 IGTK-SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           I T  ++ YS    +  + I++  G G+ +LI ++          LPFS
Sbjct: 130 IDTSIAEFYSLGLGDI-YSIAASHGRGVTQLIERV---------LLPFS 168


>gi|122702447|emb|CAL88414.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|34541718|ref|NP_906197.1| GTP-binding protein EngA [Porphyromonas gingivalis W83]
 gi|188994055|ref|YP_001928307.1| GTP-binding protein EngA [Porphyromonas gingivalis ATCC 33277]
 gi|41017000|sp|Q7MT48|DER_PORGI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|34398036|gb|AAQ67096.1| GTP-binding protein, Era/ThdF family [Porphyromonas gingivalis W83]
 gi|188593735|dbj|BAG32710.1| GTP-binding protein EngA [Porphyromonas gingivalis ATCC 33277]
          Length = 437

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKSSL NA   +D  IVTDI GTTRD +    +  G    + DTAGIR+ 
Sbjct: 178 RIAIVGRPNAGKSSLLNAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +EN+D+ +L+
Sbjct: 238 GKVNEDLEYYSVIRSIRAIENSDVCVLM 265



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L +   AIV +  GTTRD     +   G    I DT G +
Sbjct: 2   GALVAIVGRPNVGKSTLFNRLTQSRQAIVAEEAGTTRDRQYGRVHWNGREFSIVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKE 307
             ++D+ E+E  K+ ++ VE AD++L + +
Sbjct: 62  VNSEDVFEEEINKQVYIAVEEADVVLFVAD 91


>gi|319404573|emb|CBI78179.1| GTP-binding protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 477

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 29/186 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  + +A+V D PG TRD       L+     + DTAG+ E D
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRRIHSAKLQDLHFDVIDTAGLEEAD 64

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKS 329
           +  +E     +T + ++ ADLIL +  +++K  I+ P ++DF           + +  KS
Sbjct: 65  NHTLEGRMRAQTKIAIDEADLILFV--LDAKSGIT-PSDLDFSSLIRKSGKPIVLVSNKS 121

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRH 379
           +  +    EY+           IS+  G GL +L + I  +I ++K     F++   K  
Sbjct: 122 ESKTAIAGEYEAWSLGLGEPCPISAEHGHGLSDLRDAIVAAIGADKV----FNLRQEKEK 177

Query: 380 LYHLSQ 385
            Y  +Q
Sbjct: 178 TYTTAQ 183



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS+L N++ K+D  +     G TRD +++D +     +K+ DTAG+R  
Sbjct: 208 RIAVVGRPNTGKSTLINSMLKQDRLLTGPEAGITRDSISVDWEWNNRRIKLFDTAGLRRK 267

Query: 281 DDIVEK 286
             + EK
Sbjct: 268 SKVQEK 273


>gi|163754018|ref|ZP_02161141.1| hypothetical protein KAOT1_20387 [Kordia algicida OT-1]
 gi|161326232|gb|EDP97558.1| hypothetical protein KAOT1_20387 [Kordia algicida OT-1]
          Length = 434

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSSL NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSLINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFEFNLVDTAGIRRK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E++D+ LL+
Sbjct: 236 AKVKEDLEFYSVMRSIRAIEHSDVCLLV 263



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN + K+  AIV  + G TRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRMIKRREAIVDSVSGVTRDRHYGKSDWNGKEFSLIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DDI E+E  K+  L ++ AD IL + ++ S
Sbjct: 65  DDIFEQEIDKQVELAIDEADAILFVVDVES 94


>gi|120598182|ref|YP_962756.1| GTP-binding protein EngA [Shewanella sp. W3-18-1]
 gi|166225859|sp|A1RHQ7|DER_SHESW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|120558275|gb|ABM24202.1| small GTP-binding protein [Shewanella sp. W3-18-1]
          Length = 488

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ EG    I DTAG+R  
Sbjct: 200 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMEREGREYVIIDTAGVRRR 259

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +   ++EK  + +T   VE+A+++LL+
Sbjct: 260 SKVHQVIEKFSVIKTLKAVEDANVVLLI 287



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E +  +++   +E AD++L + +  +
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARA 93


>gi|146293744|ref|YP_001184168.1| GTP-binding protein EngA [Shewanella putrefaciens CN-32]
 gi|166225857|sp|A4Y8T6|DER_SHEPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145565434|gb|ABP76369.1| small GTP-binding protein [Shewanella putrefaciens CN-32]
 gi|319427118|gb|ADV55192.1| ribosome-associated GTPase EngA [Shewanella putrefaciens 200]
          Length = 488

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ EG    I DTAG+R  
Sbjct: 200 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMEREGREYVIIDTAGVRRR 259

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +   ++EK  + +T   VE+A+++LL+
Sbjct: 260 SKVHQVIEKFSVIKTLKAVEDANVVLLI 287



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E +  +++   +E AD++L + +  +
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARA 93


>gi|225620645|ref|YP_002721903.1| putative GTP-binding protein [Brachyspira hyodysenteriae WA1]
 gi|225215465|gb|ACN84199.1| putative GTP-binding protein [Brachyspira hyodysenteriae WA1]
          Length = 501

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 5/105 (4%)

Query: 209 QGKLGEII--RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           Q +L E I  +    I I+G  NAGKS+L N L  KD +IV++I GTTRD +    + +G
Sbjct: 225 QYRLDEYIAQKKTINIAIVGKPNAGKSTLLNTLIGKDRSIVSNIAGTTRDAIDETFNFKG 284

Query: 267 YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEI 308
             + + DTAGIR+  ++   VE   + R    +E +D+ +L+ ++
Sbjct: 285 DDICLVDTAGIRKKKNVNTDVEYYSVNRAIKAIEASDVCILMLDV 329



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 12/141 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKS+LFN  A +  +IV  + G TRD+      ++     + DT G+ +  
Sbjct: 4   IAILGRPNVGKSTLFNRFAGRRKSIVDPMAGVTRDISIAKTYIDDIEFNVFDTGGLLDVS 63

Query: 282 DIVEKEGIKRTFLE--VENADLILLLKEINSKKEISFPKNIDFIFIGTKSD------LYS 333
           D    E ++   L+  +E++D++L L + +     S P +  FI I  KS       +  
Sbjct: 64  DDTLNEKVREKALKTALEDSDILLFLVDAHQ----SHPDDRHFINIIRKSGKPIILVINK 119

Query: 334 TYTEEYDHLISSFTGEGLEEL 354
              + +++L+S F   G++++
Sbjct: 120 VDADSHNNLVSEFYSLGIKDV 140


>gi|149194988|ref|ZP_01872081.1| GTP-binding protein EngA [Caminibacter mediatlanticus TB-2]
 gi|149134909|gb|EDM23392.1| GTP-binding protein EngA [Caminibacter mediatlanticus TB-2]
          Length = 460

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSL NAL   + AIV+DI GTT D +   +   GY +   DTAGIR  
Sbjct: 199 KVAIVGRVNVGKSSLLNALVGSERAIVSDIDGTTIDPIDETIYFNGYHITFVDTAGIRRR 258

Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305
             I  +EK  + RT   +E AD+ +L+
Sbjct: 259 SKIKDIEKYALMRTEKVLEEADVAILV 285



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 26/169 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAG 276
           K+ ILG  N GKSS FN + ++  AIV++  GTTRD    V+++D DLE  +  + DT G
Sbjct: 3   KVAILGKPNVGKSSFFNRIIRERDAIVSEKAGTTRDIKKRVVSLDDDLEEII--LIDTGG 60

Query: 277 IRETDDIVEKEGIKRTFLEV-ENADLILLL---KEINSKKEISFPK-----NIDFIFIGT 327
           + E D++  K  +K    EV + ADLIL +   + I  ++EI + +     N   I +  
Sbjct: 61  LEERDELFNK--VKEKAFEVAKEADLILYMVDGRTIPDEEEIKYFRKLQKLNKPLILVVN 118

Query: 328 KSD-------LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFK 367
           K D       +Y  Y+   D +  IS     G+ +LI +IK  +  K K
Sbjct: 119 KVDNDKLMEGVYDFYSLGADEVFPISIAHNRGVGKLIERIKEFVPKKQK 167


>gi|322831770|ref|YP_004211797.1| ribosome-associated GTPase EngA [Rahnella sp. Y9602]
 gi|321166971|gb|ADW72670.1| ribosome-associated GTPase EngA [Rahnella sp. Y9602]
          Length = 494

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L K   A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTKTRDALVADFPGLTRDRKYGRAEIEGNEFIIVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE     ++ L +E AD++L +
Sbjct: 65  DGVETRMAGQSLLAIEEADIVLFM 88



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 267

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 268 GKVTETVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 303


>gi|294776607|ref|ZP_06742076.1| small GTP-binding protein domain protein [Bacteroides vulgatus
           PC510]
 gi|294449522|gb|EFG18053.1| small GTP-binding protein domain protein [Bacteroides vulgatus
           PC510]
          Length = 396

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 20/167 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   IV+ G  N+GKSSL NAL  +D A+V+DIPGTT D ++  ++++  G  + I DT 
Sbjct: 10  NRLHIVLFGKRNSGKSSLINALTGQDTALVSDIPGTTTDAVSKAMEIQHIGPCLFI-DTP 68

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISF-----PKNIDFIFIGTKS 329
           G  +  ++ E   I RT   +E  D+ LLL E  N + E  +      +NI  I I  K+
Sbjct: 69  GFDDEGELGEMR-ITRTLKAIERTDIALLLCEDGNCEDEKQWMEQLNKRNIPVILILNKA 127

Query: 330 DLYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKF 366
           D+        D           +IS+    G+E+++  I   L   F
Sbjct: 128 DIRKDIASTRDCIEKECGQNPLIISAKEQTGIEKILQAILEKLPADF 174


>gi|260221255|emb|CBA29636.1| GTP-binding protein engA [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 445

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ + G  N GKS+L N    ++  +  D+PGTTRD +++  + EG   ++ DTAG+R+ 
Sbjct: 181 KLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFEREGQKFELVDTAGLRKK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +E+A ++LLL
Sbjct: 241 GKVFEAIEKFSVVKTLQAIESASVVLLL 268



 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN L K   AIV D  G TRD
Sbjct: 5   IALVGRPNVGKSTLFNRLTKTRDAIVADYAGLTRD 39


>gi|257784531|ref|YP_003179748.1| small GTP-binding protein [Atopobium parvulum DSM 20469]
 gi|257473038|gb|ACV51157.1| small GTP-binding protein [Atopobium parvulum DSM 20469]
          Length = 441

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N LA K  +IV+D+ GTTRD +   ++ +G  +++ DTAGIR+  
Sbjct: 181 LAIIGRPNVGKSSLANRLANKKRSIVSDVAGTTRDAIDTMIEWKGTPIRLVDTAGIRKKS 240

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   VE   + R    ++ AD+ LL+
Sbjct: 241 QVHEDVEYYSLVRGLQAMDRADICLLV 267



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS+L N +A+K  AIV +  G TRD    D D  G   K+ DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLVNRIAEKRDAIVHESRGVTRDRSYHDADWNGREFKLIDTGGIESIK 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           + D       ++  L  + AD+I+ +
Sbjct: 66  SQDRFAPHIREQALLACDEADVIVFV 91


>gi|257892054|ref|ZP_05671707.1| tRNA modification GTPase TrmE [Enterococcus faecium 1,231,410]
 gi|257828414|gb|EEV55040.1| tRNA modification GTPase TrmE [Enterococcus faecium 1,231,410]
          Length = 121

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 9/117 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLD-- 57
           E +TI A+ST     AISI+RLSG    Q+ + +     K+    P   ++ Y   +D  
Sbjct: 7   EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSH-TIHYGHIVDPK 65

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
             +++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF
Sbjct: 66  SNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEF 121


>gi|122702759|emb|CAL88569.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|229815385|ref|ZP_04445720.1| hypothetical protein COLINT_02432 [Collinsella intestinalis DSM
           13280]
 gi|229809165|gb|EEP44932.1| hypothetical protein COLINT_02432 [Collinsella intestinalis DSM
           13280]
          Length = 445

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKSSLFN +   D +IV++I GTTRD +   ++ +G   ++ DTAGIR+ 
Sbjct: 181 RVAIIGRPNAGKSSLFNKMIGNDRSIVSNIAGTTRDAIDTVVERDGKRYRMVDTAGIRKK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ LL+
Sbjct: 241 STVYENIEYYSMVRGLRAIDRADVALLV 268



 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS+L N +A+   AIV    G TRD      D  G    + DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLVNRIAQTSDAIVHQSRGVTRDRSYHVADWNGREFMLVDTGGIEPMK 65

Query: 280 TDDI 283
           +DD+
Sbjct: 66  SDDV 69


>gi|122700823|emb|CAL88000.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|146312646|ref|YP_001177720.1| GTP-binding protein EngA [Enterobacter sp. 638]
 gi|166920100|sp|A4WD89|DER_ENT38 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145319522|gb|ABP61669.1| small GTP-binding protein [Enterobacter sp. 638]
          Length = 490

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D+VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKITDVVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADIVLFM 88


>gi|292806562|gb|ADE42411.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNHLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702277|emb|CAL88329.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|160931619|ref|ZP_02079014.1| hypothetical protein CLOLEP_00451 [Clostridium leptum DSM 753]
 gi|156869490|gb|EDO62862.1| hypothetical protein CLOLEP_00451 [Clostridium leptum DSM 753]
          Length = 440

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ ++G  NAGKSSL N +A +D  IV+DI GTTRD +   ++ +     + DTAGIR  
Sbjct: 179 RVAVIGKPNAGKSSLINQIAGEDRCIVSDIAGTTRDAIDTQIENDYGRFTLIDTAGIRRK 238

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
              DD +EK  + R  + ++ +D+ +++
Sbjct: 239 SRVDDEIEKYSVIRAQMAIDRSDVCVIM 266



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  + VAIV D PG TRD +  + +     V + DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLFNKLIGQRVAIVNDTPGVTRDRIYGECEWRSRKVTLVDTGGIEPYS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD++  +  ++  L ++ AD+I+L+ ++ +
Sbjct: 66  DDVILSQMRRQAELAIDTADVIVLVTDVKT 95


>gi|46203982|ref|ZP_00209197.1| COG0486: Predicted GTPase [Magnetospirillum magnetotacticum MS-1]
          Length = 132

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           + + TK+DL +   E     IS+ TG GL+ L++ I++           ++ + +RH   
Sbjct: 16  LVVQTKADLAAGGAEPQGLAISAVTGAGLDALLDAIQAAAEASLGHGD-ALITRERHREA 74

Query: 383 LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L++  ++LE           +++AE+LRLA  +LG++ G V VE++LD +F+ FCIGK
Sbjct: 75  LTRAAQHLERLITAPSGFPPELLAEDLRLAVRALGEVGGHVGVEEMLDRLFAGFCIGK 132


>gi|303327492|ref|ZP_07357933.1| ribosome-associated GTPase EngA [Desulfovibrio sp. 3_1_syn3]
 gi|302862432|gb|EFL85365.1| ribosome-associated GTPase EngA [Desulfovibrio sp. 3_1_syn3]
          Length = 452

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I  L  D+++ + +G +        ++ +LG  NAGKSSL NALA ++  IV+D+ GTT
Sbjct: 165 NINALCEDLAALLPEGAVEPPAPPALRLAMLGRPNAGKSSLINALAGEERMIVSDVAGTT 224

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILL 304
           RD + +    +G      DTAG+R      D VEK  +         AD+ LL
Sbjct: 225 RDSVDVRFRRDGQDYVFVDTAGVRRRTRITDSVEKYSVNAAIKSSTKADVTLL 277



 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 13/63 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK-------ISDT 274
           IV++G  N GKS+LFN L + + AI  D PG TRD       +EG + +       I DT
Sbjct: 8   IVLVGRPNVGKSTLFNRLIRSNRAITHDRPGVTRD------RMEGVVRRKDLPSFGIVDT 61

Query: 275 AGI 277
            GI
Sbjct: 62  GGI 64


>gi|122701551|emb|CAL88165.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|99905859|gb|ABF68624.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  TLLSKEIKALNLKAAQMSDLIL 90


>gi|127512226|ref|YP_001093423.1| GTP-binding protein EngA [Shewanella loihica PV-4]
 gi|166225856|sp|A3QCG6|DER_SHELP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|126637521|gb|ABO23164.1| small GTP-binding protein [Shewanella loihica PV-4]
          Length = 489

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 31/182 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I L+ +G    I DTAG+R  
Sbjct: 201 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPLERDGQEYVIIDTAGVRRR 260

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFI---- 325
             +   VEK  + +T   VE+A+++LL+  +++++ I+        F  N+    +    
Sbjct: 261 SKVHETVEKFSVIKTLKAVEDANVVLLV--VDAREGIAEQDLGLLGFALNVGRALVIAVN 318

Query: 326 ---GTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              G   D+      E D           H IS+  G G+  L   ++    +  +++  
Sbjct: 319 KWDGIDQDVKERVKSELDRRLGFIDFARIHFISALHGTGVGHLFESVEEAYESATRRVST 378

Query: 372 SI 373
           S+
Sbjct: 379 SM 380



 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADYPGLTRDRKYGRAHLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E    +++   +E AD++L L +  +
Sbjct: 65  EGIETRMAEQSLAAIEEADVVLFLTDARA 93


>gi|268593180|ref|ZP_06127401.1| ribosome-associated GTPase EngA [Providencia rettgeri DSM 1131]
 gi|291311226|gb|EFE51679.1| ribosome-associated GTPase EngA [Providencia rettgeri DSM 1131]
          Length = 492

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 19/154 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324
           + VE     ++   +E AD++L +               K + S+K+ ++      D I 
Sbjct: 65  EGVETHMAAQSLQAIEEADIVLFMVDARAGLMPADEGIAKHLRSRKKKTYLVANKTDGID 124

Query: 325 IGTK-SDLYSTYTEEYDHLISSFTGEGLEELINK 357
           + T   D YS    E  H I++  G G+ +LI +
Sbjct: 125 VTTAIGDFYSLGLGEI-HPIAASHGRGVTQLIEQ 157



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 207 KLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDEREYILIDTAGVRKR 266

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 267 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 302


>gi|122702281|emb|CAL88331.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122700839|emb|CAL88008.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700881|emb|CAL88029.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|157165129|ref|YP_001466229.1| GTP-binding protein EngA [Campylobacter concisus 13826]
 gi|166224319|sp|A7ZBS1|DER_CAMC1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|112801522|gb|EAT98866.1| GTP-binding protein EngA [Campylobacter concisus 13826]
          Length = 462

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++++G  N GKSSLFN LA++ +AI +D+ GTTRD     +++EG    + D+ G+ ++
Sbjct: 3   KVILVGKPNVGKSSLFNRLARRRIAITSDVSGTTRDTNKAKIEVEGKECILIDSGGLDDS 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            ++  K    +T  E +N+D+IL +
Sbjct: 63  SELF-KNVKAKTLAEAKNSDVILYM 86



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL K+  A+V+D+ GTT D +    + +G + +  DTAGIR+ 
Sbjct: 199 RVGIIGRVNVGKSSLLNALVKESRAVVSDVAGTTIDPVNEIYEHDGRVFEFVDTAGIRKR 258

Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305
             I  +E+  + RT   +E  D+ LL+
Sbjct: 259 GKIEGIERYALNRTEKILEETDVALLV 285


>gi|310659189|ref|YP_003936910.1| GTPase involved in ribosome synthesis and maintenance [Clostridium
           sticklandii DSM 519]
 gi|308825967|emb|CBH22005.1| GTPase involved in ribosome synthesis and maintenance [Clostridium
           sticklandii]
          Length = 438

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L +++  +  Q    E+  +  K+ I+G  NAGKSS+ N L  ++  IV+ I GTTRD +
Sbjct: 155 LLDEVVKNFPQDMDTELDEDVVKVAIVGKPNAGKSSILNRLIGEERVIVSPIAGTTRDAI 214

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
              ++++G      DTAGIR    +   +EK  + R +  VE AD++L +
Sbjct: 215 DTYIEMDGKKYLFIDTAGIRRKSKVYENIEKYSVIRAYASVEKADVVLTV 264



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +A + +AIV D PG TRD +    +       I DT GI  ++
Sbjct: 5   VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRIYAQAEWVSKHFTIIDTGGIEPDS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           ++++ K+  ++  L ++ A +IL +
Sbjct: 65  EELIPKKMRQQAELAMDMAQVILFV 89


>gi|238916971|ref|YP_002930488.1| GTP-binding protein [Eubacterium eligens ATCC 27750]
 gi|259645875|sp|C4Z0C8|DER_EUBE2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238872331|gb|ACR72041.1| GTP-binding protein [Eubacterium eligens ATCC 27750]
          Length = 441

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           +++ SH  +G   +   +  K+ I+G  N GKSS+ N L  K+  IV+DI GTTRD +  
Sbjct: 159 DEVVSHFPEGSDTDKEDDRPKVAIIGKPNVGKSSIINKLVGKNRVIVSDIAGTTRDAIDT 218

Query: 261 DLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
            +   G      DTAG+R    I   +E+  I RT   VE AD+ +L+
Sbjct: 219 AIKYNGKEYVFIDTAGLRRKSKIKEDLERFSIIRTVAAVERADIAILV 266



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN+L  + ++IV D PG TRD +  ++    +   + DT GI  +T
Sbjct: 6   VAVVGRPNVGKSTLFNSLCGQQISIVKDTPGVTRDRIYAEVSWLNHNFTLIDTGGIEPDT 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+  +  ++  + +E AD+I+ + ++
Sbjct: 66  GDIILSQMREQAEIAIETADVIIFMTDV 93


>gi|122700889|emb|CAL88033.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700833|emb|CAL88005.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|288924558|ref|ZP_06418495.1| ribosome-associated GTPase EngA [Prevotella buccae D17]
 gi|315607420|ref|ZP_07882416.1| ribosome-associated GTPase EngA [Prevotella buccae ATCC 33574]
 gi|288338345|gb|EFC76694.1| ribosome-associated GTPase EngA [Prevotella buccae D17]
 gi|315250852|gb|EFU30845.1| ribosome-associated GTPase EngA [Prevotella buccae ATCC 33574]
          Length = 437

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           DDI E    ++  +  E ADL+L L ++++      ++++       +  I +  K D  
Sbjct: 65  DDIFEDAIRRQVLVATEEADLVLFLVDVSTGVTDWDEDVAMILRRTKLPVILVANKVDNS 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKI 358
           S Y E  +         H IS+ TG G  +L++ I
Sbjct: 125 SEYYEAAEFYKLGLGDPHCISAATGGGTGDLLDLI 159



 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 86/173 (49%), Gaps = 9/173 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  N GKSS+ NA   +D  IVT+I GTTRD +    D  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
           + +   +E   + R+   +EN+D+ +L+  I++ + I       F  I   +        
Sbjct: 237 NKVSEDLEFYSVMRSIRAIENSDVCILM--IDATRGIETQDMNIFQLIQKNNKSLVVVVN 294

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVR 388
           ++D L+   T + ++   N I++ ++  F   P  FS    K+ ++ + +T +
Sbjct: 295 KWD-LVEDKTQKVIDTFENAIRARMA-PFVDFPIIFSSAVTKQRIFKVLETAK 345


>gi|210633108|ref|ZP_03297675.1| hypothetical protein COLSTE_01584 [Collinsella stercoris DSM 13279]
 gi|210159262|gb|EEA90233.1| hypothetical protein COLSTE_01584 [Collinsella stercoris DSM 13279]
          Length = 444

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKSSLFN +   D +IV++I GTTRD +   ++ +G   ++ DTAGIR+ 
Sbjct: 180 RVAIIGRPNAGKSSLFNKMIGNDRSIVSNIAGTTRDAIDTVVERDGKRYRMVDTAGIRKK 239

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ LL+
Sbjct: 240 STVYENIEYYSMVRGLRAIDRADVALLV 267



 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS+L N +A+   AIV    G TRD      D  G    + DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLVNRIAQTSDAIVHQSRGVTRDRSYHVADWNGREFTLVDTGGIEPMK 65

Query: 280 TDDI 283
           +DD+
Sbjct: 66  SDDV 69


>gi|122700861|emb|CAL88019.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700859|emb|CAL88018.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|37525336|ref|NP_928680.1| GTP-binding protein EngA [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|41017002|sp|Q7N702|DER_PHOLL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|36784763|emb|CAE13673.1| GTP-binding protein EngA [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 493

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 208 KLAIVGKPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYILIDTAGVRKR 267

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 268 GKITETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 303



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE     ++ L +E AD++L +
Sbjct: 65  DGVETHMAAQSLLAIEEADIVLFM 88


>gi|224372205|ref|YP_002606577.1| GTP-binding protein EngA [Nautilia profundicola AmH]
 gi|254783161|sp|B9L7G9|DER_NAUPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|223589108|gb|ACM92844.1| ribosome-associated GTPase EngA [Nautilia profundicola AmH]
          Length = 461

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 26/174 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV----LTIDLDLEGYLVKISDTAG 276
           K+ ILG  N GKSSLFN + ++  AIV++  GTTRD+    +++D DLE   + + DT G
Sbjct: 3   KVAILGKPNVGKSSLFNRILRERDAIVSEKAGTTRDIKKREVSLDDDLEE--IVLLDTGG 60

Query: 277 IRETDDIVEKEGIKRTFLEV-ENADLILLL---KEINSKKEISFPKNID-----FIFIGT 327
           + E D++  K  +K   LEV + ADL+L +   K I  ++EI + +N+       I +  
Sbjct: 61  LEERDELFNK--VKEKALEVAKEADLVLYMVDGKTIPDEEEIKYFRNLQKLGKHIILVVN 118

Query: 328 KSD-------LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           K D       +Y  Y    D +  IS     G+ +LI +IK  +  K K    S
Sbjct: 119 KIDNDKMMEKVYDFYELGADEIFPISVSHNRGVGKLIERIKKFVPKKPKTFEVS 172



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSL NAL  ++ AIV+D+ GTT D +  ++  +G+ +   DTAGIR  
Sbjct: 200 KVAIVGRVNVGKSSLLNALVGEERAIVSDVDGTTIDPIDENIYHDGWNITFVDTAGIRRR 259

Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305
             I  +EK  + RT   +E AD+ +L+
Sbjct: 260 SKIKDIEKYALLRTEKVLEEADIAILV 286


>gi|154175320|ref|YP_001407734.1| GTP-binding protein EngA [Campylobacter curvus 525.92]
 gi|166224320|sp|A7GWZ2|DER_CAMC5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|112803598|gb|EAU00942.1| putative GTPase [Campylobacter curvus 525.92]
          Length = 461

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI+++G  N GKSSLFN LA++ +AI ++I GTTRD     +++EG    + D+ G+ E+
Sbjct: 3   KIILVGKPNVGKSSLFNRLARQRIAITSEISGTTRDTNKAKIEVEGKDCLLIDSGGLDES 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            ++ +    K T  E +N+D+I+ +
Sbjct: 63  SELFKNVKFK-TLAEAKNSDIIIYM 86



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 18/158 (11%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212
           E+S  +   ID+L+    +I   L    E+DV      E  +D L   ND      +G+L
Sbjct: 140 EISVSHNTGIDELSQ---WIAGQL----EDDVIKTDESEDFDDFLENFND------EGEL 186

Query: 213 --GEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
              E   + Y ++ I+G  N GKSSL NAL K   A+V+DI GTT D +    + EG + 
Sbjct: 187 ESSENFEDRYIRVGIVGRVNVGKSSLLNALVKDARAVVSDIAGTTIDPVNEIYEHEGRIF 246

Query: 270 KISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLL 305
           +  DTAGIR+   I  +E+  + RT   +EN+D+ LL+
Sbjct: 247 EFVDTAGIRKRGKIEGIERYALNRTEKILENSDIALLV 284


>gi|149277444|ref|ZP_01883585.1| GTP-binding protein EngA [Pedobacter sp. BAL39]
 gi|149231677|gb|EDM37055.1| GTP-binding protein EngA [Pedobacter sp. BAL39]
          Length = 433

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSL NAL  K+  IVT I GTTRD + I  +  G+     DTAG+R+ 
Sbjct: 175 KITIVGRPNVGKSSLINALIGKERNIVTPIAGTTRDSIHIHYNQFGHEFMFIDTAGLRKK 234

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + RT   +E AD+++L+
Sbjct: 235 TKVKENIEFYSVMRTIKALEEADVVVLM 262



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           I I+G  N GKS+LFN L +   AIV D  G TRD      +       + DT G +  +
Sbjct: 5   IAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYGSAEWTDKQFTVIDTGGYVANS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           +D+ E    ++  + +E A ++L + ++
Sbjct: 65  EDVFEAAIREQVVIAIEEATVLLFMVDV 92


>gi|119494580|ref|ZP_01624713.1| GTP-binding protein EngA [Lyngbya sp. PCC 8106]
 gi|119452086|gb|EAW33297.1| GTP-binding protein EngA [Lyngbya sp. PCC 8106]
          Length = 453

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA   ++ AIV+ I GTTRD +   ++  G   ++ DTAGIR  
Sbjct: 178 RVAIVGRPNVGKSSLLNAFLGENRAIVSPISGTTRDAIDTVVERNGKTYRLVDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
            ++    E  GI R F  +  ++++LL+
Sbjct: 238 KNVEYGAEFFGINRAFKAIRRSNIVLLI 265



 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + I+G  N GKS+L N L++   +IV D PG TRD
Sbjct: 6   VAIVGRPNVGKSTLVNRLSETQDSIVHDQPGITRD 40


>gi|71908594|ref|YP_286181.1| GTP-binding protein EngA [Dechloromonas aromatica RCB]
 gi|123760409|sp|Q47BS0|DER_DECAR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|71848215|gb|AAZ47711.1| Small GTP-binding protein protein domain:GTP-binding protein
           [Dechloromonas aromatica RCB]
          Length = 443

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 13/155 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKS+L N L  ++  I  D PGTTRD + ID +  G    + DTAG+R+ 
Sbjct: 177 RVAIVGRPNVGKSTLINTLLGEERVIAFDAPGTTRDSIEIDFERGGRKYVLVDTAGMRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
             +   +EK  + +T   +E+A++++L+ +  +          DFI    ++ + +    
Sbjct: 237 GKVFESIEKFSVVKTLQSIEDANVVILMVDAQADVSDQDAHIADFILQSGRALVVA--VN 294

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           ++D L  ++T E       + + IL  K K L F+
Sbjct: 295 KWDGL-DAYTRE-------QTRQILQRKLKFLDFA 321



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 32/159 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +V++G  N GKS+LFN L K   AIV D+PG TRD       L      + DT G     
Sbjct: 5   LVLVGRPNVGKSTLFNRLTKSRDAIVADMPGLTRDRHYGHGKLGKKPYLVVDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL-----------KEINSK-KEISFPKNIDFIF 324
           + + KEGI     ++T   +  AD I+ +           KEI +K + I  P    F+ 
Sbjct: 61  EPLVKEGILHEMARQTEQAIAEADAIIFVVDGRSGLTPHDKEIANKLRRIDRPV---FVA 117

Query: 325 IGTKSDLYSTYTEEYDH--------LISSFTGEGLEELI 355
           +     + S   E   H         IS+  GEG+  L+
Sbjct: 118 VNKAEGMNSGMVEAEFHELGLGEPNAISAAHGEGIRGLV 156


>gi|288801362|ref|ZP_06406816.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288331745|gb|EFC70229.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 437

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    D  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSIINAFMGEDRNIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRK 236

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
           + + E      + R+   +EN+D+ +L+
Sbjct: 237 NKVTEDLEFYSVMRSIRAIENSDVCILM 264



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 28/164 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L K   AIV+D  GTTRD     +D  G    I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTKTRSAIVSDTAGTTRDRQYGKVDWNGREFSIVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +DI E    ++  +  E A+L+L + ++ +          +I     +  I +  K D  
Sbjct: 65  EDIFEDAIRRQVLIATEEANLVLFVVDVQTGLTDWDEDVAQILRKSKVPIILVVNKVD-- 122

Query: 333 STYTEEYD------------HLISSFTGEG----LEELINKIKS 360
               ++YD              ISS TG G    L+E+IN +K+
Sbjct: 123 -KNEQQYDAAEFYSLGLGEPFCISSSTGSGTGDLLDEVINNLKA 165


>gi|122700821|emb|CAL87999.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|289806068|ref|ZP_06536697.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 188

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 21/174 (12%)

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS------ 315
           + ++G  + I DTAG+R+ +D VE+ GI+R + E+E AD +L + +  +   +       
Sbjct: 11  IHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWP 70

Query: 316 -----FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKSILSN 364
                 PKN+    +  K+D+       +E   H    +S+ TGEG++ L N +K  +  
Sbjct: 71  DFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGF 130

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416
               +     + +RHL  L++   +LE   A L     G +++AE LRLA  SL
Sbjct: 131 D-TNMEGGFLARRRHLQALAEAANHLEQGKAQLLGAWAG-ELLAEELRLAQQSL 182


>gi|242255946|gb|ACS88957.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG SN GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQSNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|238758839|ref|ZP_04620012.1| GTP-binding protein engA [Yersinia aldovae ATCC 35236]
 gi|238702947|gb|EEP95491.1| GTP-binding protein engA [Yersinia aldovae ATCC 35236]
          Length = 494

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324
           D VE +   ++ L +E AD++L +               + + S+++ +F      D I 
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358
             T + D YS    +  H I++  G G+ +LI  +
Sbjct: 125 PDTATADFYSLGLGDV-HAIAASHGRGVTQLIEDV 158



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKR 267

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +T   +E+++++LL+  I+++  IS
Sbjct: 268 GKITETVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 303


>gi|187778884|ref|ZP_02995357.1| hypothetical protein CLOSPO_02479 [Clostridium sporogenes ATCC
           15579]
 gi|187772509|gb|EDU36311.1| hypothetical protein CLOSPO_02479 [Clostridium sporogenes ATCC
           15579]
          Length = 439

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D PG TRD +  + +   Y   + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+  +  ++  + +E A++I+ L
Sbjct: 66  EDIIISQMRRQAQIAIEMANVIIFL 90



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I  +G  N GKSSL N L  ++  IV++IPGTTRD +   ++ +     + DTAG+R   
Sbjct: 179 IAFVGKPNVGKSSLINKLLGEERLIVSNIPGTTRDSIDSYVNTDFGEFTLIDTAGLRRKS 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   +E+  + RT+  +E AD+ +L+
Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILM 265


>gi|307132056|ref|YP_003884072.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Dickeya dadantii
           3937]
 gi|306529585|gb|ADM99515.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Dickeya dadantii
           3937]
          Length = 495

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDGRDYVLIDTAGVRKR 268

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 269 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 304



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    I DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGIDGNE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----------------INSKKEISFPKNIDFIF 324
           D VE    +++ L +E AD++L L +                 +  K        +D I 
Sbjct: 65  DGVETRMAEQSLLAIEEADIVLFLVDARDGLMPADHAIAQHLRMREKDTFLVANKVDGID 124

Query: 325 IGTK-SDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           I T  +D YS    E  H I++  G G+  L+ K+
Sbjct: 125 IDTGIADFYSLGLGEV-HPIAASHGRGVTSLLEKV 158


>gi|313904194|ref|ZP_07837573.1| ribosome-associated GTPase EngA [Eubacterium cellulosolvens 6]
 gi|313470996|gb|EFR66319.1| ribosome-associated GTPase EngA [Eubacterium cellulosolvens 6]
          Length = 443

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+    +   + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGERISIVKDTPGVTRDRIYADVTWLNHEFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+ K+  ++  + +E AD+I+ + ++
Sbjct: 66  SDIILKQMREQAVIAMETADVIIFITDV 93



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSS+ N L   +  IV+DI GTTRD +   +   G      DTAG+R  
Sbjct: 179 KIAIVGKPNVGKSSIINKLLGTNRVIVSDIAGTTRDAIDTVIKRNGKDYTFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  I RT   VE  D+ +++
Sbjct: 239 SKIKEELERYSIVRTVAAVERCDIAVVV 266


>gi|294102070|ref|YP_003553928.1| ribosome-associated GTPase EngA [Aminobacterium colombiense DSM
           12261]
 gi|293617050|gb|ADE57204.1| ribosome-associated GTPase EngA [Aminobacterium colombiense DSM
           12261]
          Length = 436

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 47/213 (22%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NALA  D  +V+DIPGTTRD     ++++    +  DTAG+R+ 
Sbjct: 176 RVSIVGRPNVGKSSLVNALAGSDRVLVSDIPGTTRDATDTVIEMKEGKFRFIDTAGLRKK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKS 329
             I   +E     RT   V+ +D+ LL+ +      +  K+++     K    I +  K 
Sbjct: 236 SRIDSDIEYYSFVRTLQAVDRSDVALLVMDASEPTTDQDKKMAAQVIEKGKGLILLINKW 295

Query: 330 DLYSTYTEEYDHL------------------ISSFTGEGLEELINKIKSILSNK------ 365
           D      +  D +                  +S+ T  GL +L   IK++  N+      
Sbjct: 296 DTLEAADKLGDEMRKRVRDEMPFLSHAPLLFVSALTKRGLNKLTQTIKNVQENRSRRIGT 355

Query: 366 ------------FKKLPFSIPSHKRHLYHLSQT 386
                       F+ LP S       +Y+ +QT
Sbjct: 356 TELNRLIRDVLAFQTLPTSRKGRVLKIYYCTQT 388



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSLFN +  +  AIV D+PG TRD +  + + +G    I DT G+   D
Sbjct: 4   IAIVGRPNVGKSSLFNRILGRREAIVDDMPGVTRDRIYGETEWKGRQFYIVDTGGLLVRD 63

Query: 282 DIVEKEGI-KRTFLEVENADLILLL 305
           +    EGI K+  L +E + +IL +
Sbjct: 64  EHPLVEGIRKQATLAIEESHVILFV 88


>gi|122700853|emb|CAL88015.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|293115597|ref|ZP_05792245.2| ribosome-associated GTPase EngA [Butyrivibrio crossotus DSM 2876]
 gi|292809015|gb|EFF68220.1| ribosome-associated GTPase EngA [Butyrivibrio crossotus DSM 2876]
          Length = 446

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKSS+ N +  +   IV+DI GTTRD +  D+   G      DTAG+R  
Sbjct: 184 RIAIVGKPNVGKSSIINKIVGESRVIVSDIAGTTRDAIDTDITYNGNEYVFIDTAGLRRK 243

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + I   +E+  I RT   VE AD++L++
Sbjct: 244 NKIKEELERYSIIRTVTAVERADVVLVV 271



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+    Y   + DT GI  E+
Sbjct: 11  VAIVGRPNVGKSTLFNALAGEQISIVKDTPGVTRDRIYADVTWLNYNFTLIDTGGIEPES 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+  +  ++  + + +AD+I+ + ++
Sbjct: 71  KDIILSQMREQAEIAIASADVIIFMVDV 98


>gi|193216656|ref|YP_001999898.1| GTP-binding protein EngA [Mycoplasma arthritidis 158L3-1]
 gi|193001979|gb|ACF07194.1| GTPase protein EngA [Mycoplasma arthritidis 158L3-1]
          Length = 434

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 65/105 (61%), Gaps = 6/105 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ +LG +N GKS+L N L+ ++ +IV+DI GTTRD ++  + + G   ++ DTAGI+ 
Sbjct: 172 FKLALLGKTNVGKSTLLNTLSNEERSIVSDIAGTTRDAISSFIKINGEEFEVVDTAGIKR 231

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-FPKNI 320
                D +E   + R    +E A+L LL+  +++  E+S F +NI
Sbjct: 232 KSKLIDSIEHYSLIRAHAAIEEANLCLLV--LDATDEVSHFHQNI 274



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+ FN L  K  AIV D PG TRD +   +   G    + DT GI  E 
Sbjct: 5   VAIIGKPNVGKSTFFNKLINKRKAIVYDRPGVTRDRIYDVVSWAGSTFTLIDTGGITIEN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DD  E+  I+   + ++ A +I+ L
Sbjct: 65  DDFKEQIKIQAQ-VAIDEASVIVFL 88


>gi|116328637|ref|YP_798357.1| GTP-binding protein EngA [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330706|ref|YP_800424.1| GTP-binding protein EngA [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122281540|sp|Q04TV4|DER_LEPBJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|122283577|sp|Q04ZS1|DER_LEPBL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|116121381|gb|ABJ79424.1| GTPase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124395|gb|ABJ75666.1| GTPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 487

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           +++ I+G  N+GKSSL NA+   + A+V+D+ GTTRD +   L+     + ++DTAGIR 
Sbjct: 225 FRLAIVGKPNSGKSSLLNAVCGYERAVVSDVAGTTRDSVDTLLEFGNRKLLLTDTAGIRK 284

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLL 305
             +T + +E    +RT   +E++DL++ L
Sbjct: 285 HSKTAEALEYYSYQRTLKAIESSDLVIHL 313



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 9/94 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGYLVKISDTAG 276
           + I+G  N GKS+LFN+L KK +AI  D PG TRDVL+  +     DL+ YL    DT G
Sbjct: 30  VSIVGRQNVGKSTLFNSLLKKKLAITEDYPGVTRDVLSARVYQEEKDLDFYLC---DTPG 86

Query: 277 IR-ETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  E  D + +  ++  + ++  +D+I+ L + N
Sbjct: 87  LDIENPDSLSQSILEAAYRQLNESDVIIFLLDKN 120


>gi|319779671|ref|YP_004130584.1| GTP-binding protein EngA [Taylorella equigenitalis MCE9]
 gi|317109695|gb|ADU92441.1| GTP-binding protein EngA [Taylorella equigenitalis MCE9]
          Length = 452

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 31/179 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N+L  +   I  D+PGTTRD + ID +      K+ DTAG+R+ 
Sbjct: 188 KLAIVGRPNVGKSTLINSLIGEQRVIAFDLPGTTRDAIEIDFEHNNKKYKLIDTAGLRKR 247

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI------------ 325
             +   +EK  + +T   +E  ++++L+  ++++ EIS        FI            
Sbjct: 248 GRVFESIEKFSVIKTLQAIEACNVVVLV--LDAQSEISEQDAHIAGFILESGRALVVAIN 305

Query: 326 ---GTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
              G   D       E++           H IS+   +G++ L+  +       F+KLP
Sbjct: 306 KWDGLDEDKRDWVIREFERKLRFLSFAKVHFISALKSQGIKSLLKSVNLAHEAAFRKLP 364



 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L +   AIV D  G TRD    +  +      + DT G   + 
Sbjct: 7   IALVGRPNVGKSTLFNRLTRSRNAIVADYSGLTRDRHYGEGRIGDRPFLVIDTGGFEPKV 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
              + KE  ++T L +  +D+++ L +  S
Sbjct: 67  KTGILKEMARQTELAISESDVVIFLVDARS 96


>gi|119471071|ref|ZP_01613630.1| GTP-binding protein EngA [Alteromonadales bacterium TW-7]
 gi|119445911|gb|EAW27192.1| GTP-binding protein EngA [Alteromonadales bacterium TW-7]
          Length = 488

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD      + +GY   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E E   ++ L +E AD++L L
Sbjct: 65  EGIEIEMADQSLLAIEEADIVLFL 88



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  IV D+PGTTRD + I +        + DTAG+R  
Sbjct: 203 KLAIIGRPNVGKSTLTNRILGEERVIVYDMPGTTRDSIYIPMTRNEKEYVLIDTAGVRKR 262

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  D+VEK  + +T   +E+ +++LL+  ++++  IS
Sbjct: 263 KKVSDVVEKFSVIKTLQAIEDCNVVLLV--VDARDGIS 298


>gi|301312102|ref|ZP_07218024.1| ribosome-associated GTPase EngA [Bacteroides sp. 20_3]
 gi|300830204|gb|EFK60852.1| ribosome-associated GTPase EngA [Bacteroides sp. 20_3]
          Length = 437

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKSSL NA   +D  IVTDI GTTRD +    +  G    + DTAGIR+ 
Sbjct: 177 RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +EN+D+ +L+
Sbjct: 237 GKVNEDLEYYSVIRSIRAIENSDVCVLM 264



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L     AIV +  GTTRD     ++  G    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             ++D+ E+E  K+  + +E AD+IL + ++
Sbjct: 62  VNSEDVFEEEINKQVKVAIEEADVILFVVDV 92


>gi|300817719|ref|ZP_07097934.1| ribosome-associated GTPase EngA [Escherichia coli MS 107-1]
 gi|300529707|gb|EFK50769.1| ribosome-associated GTPase EngA [Escherichia coli MS 107-1]
          Length = 499

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305
               D VEK  + +T   +E+A++++L+
Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV 300



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 14  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 74  DGVETRMAEQSLLAIEEADVVLFM 97


>gi|283786127|ref|YP_003365992.1| GTP-binding protein [Citrobacter rodentium ICC168]
 gi|282949581|emb|CBG89199.1| GTP-binding protein [Citrobacter rodentium ICC168]
          Length = 490

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L +
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFM 88


>gi|219124383|ref|XP_002182484.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405830|gb|EEC45771.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 489

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 5/97 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ILG  N GKS+L NAL K+D  IV   PG TRD + ++   +   V+I DTAGIR+ 
Sbjct: 230 QLAILGRQNVGKSTLVNALLKQDRVIVGATPGLTRDAIAVEWTWKNRPVQIVDTAGIRKR 289

Query: 281 -----DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
                +D +E   ++     ++ AD+ +L+ +  ++K
Sbjct: 290 SQRNHEDAIEDLSVEDALRAMKVADVAVLVLDAEARK 326



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 5/61 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ILG  NAGKS+LFN L  K       AIV+++PGTTRD       + G L ++ DTAG
Sbjct: 5   VSILGPPNAGKSTLFNRLLDKAANRAGTAIVSNVPGTTRDRRECVGRIGGTLFRLVDTAG 64

Query: 277 I 277
           +
Sbjct: 65  V 65


>gi|228473598|ref|ZP_04058350.1| ribosome-associated GTPase EngA [Capnocytophaga gingivalis ATCC
           33624]
 gi|228274970|gb|EEK13780.1| ribosome-associated GTPase EngA [Capnocytophaga gingivalis ATCC
           33624]
          Length = 434

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTRYNRFGFEFNLVDTAGIRRK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E++D+ LLL
Sbjct: 236 AKVKEDLEFYSVMRSVRAIEHSDVCLLL 263



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  I G TRD      D  G    + DT G +   
Sbjct: 5   VAIVGRPNVGKSTFFNRLVQRREAIVDSISGVTRDRHYGKTDWNGRDFSVIDTGGYVAGG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DDI +KE  K+  L +E AD I+ L ++ S
Sbjct: 65  DDIFQKEIDKQVNLAIEEADAIIFLTDVES 94


>gi|311745511|ref|ZP_07719296.1| ribosome-associated GTPase EngA [Algoriphagus sp. PR1]
 gi|126578066|gb|EAZ82286.1| ribosome-associated GTPase EngA [Algoriphagus sp. PR1]
          Length = 437

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 6/113 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ILG  N GKSS  NAL  K+ +IVT+  GTTRD +     L G    I+DTAGIR+ 
Sbjct: 179 KISILGRPNVGKSSFLNALLGKERSIVTNEAGTTRDAIHTRYKLYGQDFIITDTAGIRKK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
             +   VE   + R+   +E +D+I+++ + +   E    ++I+ I +G K++
Sbjct: 239 AKVKEDVEFYSVMRSLRTLEESDVIIVMVDASRGLE---SQDINLISLGIKNN 288



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++  AI  ++ G TRD         G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLVEERKAIEDNMSGVTRDRHYGHAQWTGKFFSVIDTGGYVTGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DD+ E E  K+  L VE AD+IL +
Sbjct: 65  DDVYEAEIRKQVKLAVEEADVILFV 89


>gi|296273309|ref|YP_003655940.1| ribosome-associated GTPase EngA [Arcobacter nitrofigilis DSM 7299]
 gi|296097483|gb|ADG93433.1| ribosome-associated GTPase EngA [Arcobacter nitrofigilis DSM 7299]
          Length = 480

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 52/85 (61%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSLFN +AK+ +AIV+D  GTTRDV   ++++      + DT GI ET
Sbjct: 12  KIALVGQPNVGKSSLFNRIAKQRIAIVSDQAGTTRDVRKHEVEIFDKKALMLDTGGIDET 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +D +     ++     + AD+IL +
Sbjct: 72  NDAIFSTVKRKAVETAKEADIILFM 96



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 2/96 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  K+ I+G  N GKSS+ NAL  ++ ++V+ I GTT D +    + +   +   DTAG+
Sbjct: 213 NNIKVAIIGRVNVGKSSILNALIGQERSVVSPIAGTTIDPVDESFEYKDKNITFVDTAGL 272

Query: 278 RETDDI--VEKEGIKRTFLEVENADLILLLKEINSK 311
           R    I  +EK  + RT   +E A+L L++ + +S+
Sbjct: 273 RRRGSIEGIEKFALMRTKEMLEKANLALVVLDASSE 308


>gi|283850821|ref|ZP_06368107.1| small GTP-binding protein [Desulfovibrio sp. FW1012B]
 gi|283573744|gb|EFC21718.1| small GTP-binding protein [Desulfovibrio sp. FW1012B]
          Length = 444

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 5/102 (4%)

Query: 193 LNDILFLKNDISSHISQGK---LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +ND+     ++   +S+ K     E +  G ++ +LG  NAGKSSL NAL  +D  IV++
Sbjct: 152 VNDLAGALAELLPEVSENKDEPRAEPVEAGIRLAVLGRPNAGKSSLVNALLGEDRMIVSE 211

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           +PGTTRD + + +   G      DTAG+R+   I   +G++R
Sbjct: 212 VPGTTRDAVDVAVIRNGRRYVFVDTAGVRKRTRIT--DGVER 251



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN LAK+  AI  D PG TRD L   ++L+  +V + DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNRLAKRPKAITHDRPGVTRDRLEATVELDDRIVTLIDTGGM---- 60

Query: 282 DIVEKEGIKRTF-----LEVENADLILLL 305
           D    EG++R       + +  AD++L L
Sbjct: 61  DFDAPEGLERQIVVQAEIALNMADVVLFL 89


>gi|242255828|gb|ACS88898.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 1/89 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
            ++ KE         + +DLIL + ++ S
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDVKS 97


>gi|298207544|ref|YP_003715723.1| GTP-binding protein EngA [Croceibacter atlanticus HTCC2559]
 gi|83850180|gb|EAP88048.1| GTP-binding protein EngA [Croceibacter atlanticus HTCC2559]
          Length = 434

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTKYNRFGFEFNLVDTAGIRRK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E+AD+ LL+
Sbjct: 236 TKVKEDLEFYSVMRSVRAIEHADVCLLV 263



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 20/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN + ++  AI   I G TRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRMIQRREAITDAISGVTRDRHYGKADWNGKEFTLIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
           DDI E+E  K+  L ++ AD+IL + ++ S          ++    N   + +  K D  
Sbjct: 65  DDIFEQEIDKQVELAIDEADVILFMVDVTSGITGMDEDVAKLLRRSNKPMMLVVNKVDNA 124

Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                    Y+    EY H I S  G G  +L++++  IL  K ++   S+P
Sbjct: 125 ERHADAVEFYNLGLGEY-HAIGSMNGAGTGDLLDELVKILPEKEEREEDSLP 175


>gi|298291071|ref|YP_003693010.1| ribosome-associated GTPase EngA [Starkeya novella DSM 506]
 gi|296927582|gb|ADH88391.1| ribosome-associated GTPase EngA [Starkeya novella DSM 506]
          Length = 449

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 29/167 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  NAGKS+L NAL  +D  +     G TRD + +D++  G  +++ DTAG+R+ 
Sbjct: 183 RVAVLGRPNAGKSTLINALLGEDRLLTGPEAGITRDSIAVDIERHGVALRVFDTAGMRKR 242

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF--------IFIGTKS 329
              DD +EK  +         A+++++L +     E    +  D         +   +K+
Sbjct: 243 ARIDDKLEKLSVADGLRAARFAEVVVVLMDATHPFEEQDLRIADLAEREGRAVVLALSKA 302

Query: 330 DL-------YSTYTEEYDH-----------LISSFTGEGLEELINKI 358
           DL            EE DH           L+S  TGEGL+ L+  +
Sbjct: 303 DLVKDQPGIVKRMREEADHWLPQLRGAPVVLVSGLTGEGLDRLVRAV 349



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 4/113 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L     ++ DTAG+ E  
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDGRLGHLSFRVIDTAGLEEAK 64

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYS 333
            + +E     +T   +++AD++L L  I++K  ++ P +  F  +  +S  ++
Sbjct: 65  AESLEGRMRAQTEAAIDDADVLLFL--IDAKAGVT-PSDRAFADLARRSGKHT 114


>gi|262383937|ref|ZP_06077073.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_33B]
 gi|262294835|gb|EEY82767.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_33B]
          Length = 437

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKSSL NA   +D  IVTDI GTTRD +    +  G    + DTAGIR+ 
Sbjct: 177 RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +EN+D+ +L+
Sbjct: 237 GKVNEDLEYYSVIRSIRAIENSDVCVLM 264



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L     AIV +  GTTRD     ++  G    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             ++D+ E+E  K+  + +E AD+IL + ++
Sbjct: 62  VNSEDVFEEEINKQVKVAIEEADVILFVVDV 92


>gi|260588686|ref|ZP_05854599.1| ribosome-associated GTPase EngA [Blautia hansenii DSM 20583]
 gi|260541161|gb|EEX21730.1| ribosome-associated GTPase EngA [Blautia hansenii DSM 20583]
          Length = 441

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N +  +D  IV++I GTTRD +   +  +G      DTAG+R  
Sbjct: 179 KIAVVGKPNVGKSSLINKILGEDRVIVSNIAGTTRDAIDTKVTYQGKEYTFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + I   +E+  I RT   VE AD+++++
Sbjct: 239 NKIKEELERYSIIRTVTAVERADVVVMM 266



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  ++        + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYAEVTWLDKTFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           +D++  +  ++  + ++ AD+I+ + ++
Sbjct: 66  NDVILSQMREQAQIAIDTADVIIFMTDV 93


>gi|85716391|ref|ZP_01047363.1| GTP-binding protein EngA [Nitrobacter sp. Nb-311A]
 gi|85696748|gb|EAQ34634.1| GTP-binding protein EngA [Nitrobacter sp. Nb-311A]
          Length = 458

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 31/198 (15%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           D    I  G+  ++ R   ++ I+G  NAGKS++ N L  +D  + +   GTTRD ++++
Sbjct: 171 DADDSIESGE--DVSRRPIRVAIVGRPNAGKSTVINYLLNEDRLLTSPEAGTTRDSISVE 228

Query: 262 LDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
           LD  G   +I DTAG+R    I   +EK  +  T   V  A++++L+ +  ++ E    +
Sbjct: 229 LDWHGRDFRIFDTAGLRRRSRIEEKLEKLSVADTLRAVRFAEVVVLMMDAQNRFEEQDLR 288

Query: 319 NIDFI--------FIGTKSDLY-------STYTEEYDHL-----------ISSFTGEGLE 352
             D I            K DL        ++   + DH            +S  TGEG+ 
Sbjct: 289 IADLIEREGRALVIAVNKWDLMQGGSARIASLRNDADHWLPQVKGAPVVALSGLTGEGVG 348

Query: 353 ELINKIKSILSNKFKKLP 370
            L+  I++  +   +++P
Sbjct: 349 GLMTAIQAAYAVWNRRVP 366



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I I+G  N GKS+LFN L  + +A+V D PG TRD       L      + DTAG+ E
Sbjct: 3   FTIAIIGRPNVGKSTLFNRLVGQRLALVDDEPGVTRDRREGQARLGDLDFTVIDTAGLDE 62


>gi|331081965|ref|ZP_08331093.1| GTP-binding protein engA [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330405560|gb|EGG85090.1| GTP-binding protein engA [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 441

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N +  +D  IV++I GTTRD +   +  +G      DTAG+R  
Sbjct: 179 KIAVVGKPNVGKSSLINKILGEDRVIVSNIAGTTRDAIDTKVTYQGKEYTFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + I   +E+  I RT   VE AD+++++
Sbjct: 239 NKIKEELERYSIIRTVTAVERADVVVMM 266



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  ++        + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYAEVTWLDKTFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           +D++  +  ++  + ++ AD+I+ + ++
Sbjct: 66  NDVILSQMREQAQIAIDTADVIIFMTDV 93


>gi|299530502|ref|ZP_07043922.1| GTP-binding protein EngA [Comamonas testosteroni S44]
 gi|298721478|gb|EFI62415.1| GTP-binding protein EngA [Comamonas testosteroni S44]
          Length = 446

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ + G  NAGKS+L N    ++  +  D+PGTTRD +T+  +  G   ++ DTAG+R  
Sbjct: 182 RLAVAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAITVPFERNGQKFELIDTAGLRRK 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +E A+++LLL
Sbjct: 242 GKVFEAIEKFSVVKTLQAIEGANVVLLL 269



 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD          +   + DT G   + 
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
              + KE  K+T   V  AD+++ +
Sbjct: 65  SRGIFKEMAKQTQQAVAEADVVIFV 89


>gi|150009038|ref|YP_001303781.1| GTP-binding protein EngA [Parabacteroides distasonis ATCC 8503]
 gi|166225833|sp|A6LEP5|DER_PARD8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|149937462|gb|ABR44159.1| GTP-binding protein, Era/ThdF family [Parabacteroides distasonis
           ATCC 8503]
          Length = 437

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKSSL NA   +D  IVTDI GTTRD +    +  G    + DTAGIR+ 
Sbjct: 177 RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +EN+D+ +L+
Sbjct: 237 GKVNEDLEYYSVIRSIRTIENSDVCVLM 264



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L     AIV +  GTTRD     ++  G    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             ++D+ E+E  K+  + +E AD+IL + ++
Sbjct: 62  VNSEDVFEEEINKQVKVAIEEADVILFVVDV 92


>gi|4467677|emb|CAB37790.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 4/96 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V+  DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEFLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEI 314
            ++ KE     F   + +DLIL +   K I S ++I
Sbjct: 69  ALLSKEIKALNFKAAQMSDLILYVVDGKSIPSDEDI 104


>gi|134299023|ref|YP_001112519.1| GTP-binding protein EngA [Desulfotomaculum reducens MI-1]
 gi|172044273|sp|A4J3P1|DER_DESRM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|134051723|gb|ABO49694.1| small GTP-binding protein [Desulfotomaculum reducens MI-1]
          Length = 439

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +    +AIV D+PG TRD L  D + +G    + DT G+   +
Sbjct: 6   VAIVGRPNVGKSTLFNRIVGARIAIVEDMPGVTRDRLYQDAEWQGREFTLVDTGGLDFAE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           DI+  +  K+  L +  AD+IL +
Sbjct: 66  DIITAQIRKQAELAIYEADIILFV 89



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N +  ++  IV++IPGTTRD +    +  G    + DTAG+R  
Sbjct: 176 RIAVIGRPNVGKSSLVNTILGEERVIVSNIPGTTRDAIDSSFEKNGKNYVLVDTAGMRRR 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I    E+  + R    V+  D+ L++
Sbjct: 236 KKIDLPTERYSVVRALRAVDRCDVALMV 263


>gi|126175188|ref|YP_001051337.1| GTP-binding protein EngA [Shewanella baltica OS155]
 gi|166225854|sp|A3D6V5|DER_SHEB5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|125998393|gb|ABN62468.1| small GTP-binding protein [Shewanella baltica OS155]
          Length = 488

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ EG    I DTAG+R  
Sbjct: 200 KLAIIGKPNVGKSTLTNRILGEERVVVFDEPGTTRDSIYIPMEREGREYVIIDTAGVRRR 259

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +   ++EK  + +T   VE+A+++LL+  I++++ I+
Sbjct: 260 SKVHQVIEKFSVIKTLKAVEDANVVLLI--IDAREGIA 295



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E +  +++   +E AD++L + +  +
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARA 93


>gi|167753390|ref|ZP_02425517.1| hypothetical protein ALIPUT_01664 [Alistipes putredinis DSM 17216]
 gi|167658015|gb|EDS02145.1| hypothetical protein ALIPUT_01664 [Alistipes putredinis DSM 17216]
          Length = 433

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 20/156 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L  +  AIV    GTTRD      D  G    + DT G    +
Sbjct: 4   VAIVGRPNVGKSTLFNRLVGQRKAIVDATAGTTRDRHYGKTDWNGREFSVIDTGGYSVNS 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----------------SKKEISFPKNID-F 322
           DDI E +  ++  L +E AD+IL L E+N                 SKK +     +D +
Sbjct: 64  DDIFEDDIRRQVMLAIEEADVILFLVEVNTGITDLDQMMADILRRTSKKVLLVCNKVDNY 123

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
             I +  + YS    E  + ISS +G G  +L+++I
Sbjct: 124 DLIYSSHEFYSLGLGE-PYCISSMSGSGTGDLMDEI 158



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKSSL NAL  ++  IVT I GTTRD +    +  G    + DTAG+R+ 
Sbjct: 175 RITIVGRPNVGKSSLTNALLGEERNIVTPIAGTTRDAIHSRYNKYGLDFYLVDTAGMRKK 234

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
             + E      + R+   +E +D+ +L+
Sbjct: 235 GKVTEDLEFYSVMRSIRAIEESDVCILM 262


>gi|152981185|ref|YP_001353813.1| GTP-binding protein EngA [Janthinobacterium sp. Marseille]
 gi|166198722|sp|A6SZW6|DER_JANMA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|151281262|gb|ABR89672.1| GTP-binding protein EngA [Janthinobacterium sp. Marseille]
          Length = 447

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N L  ++  I  D+PGTTRD + I  + +G    + DTAGIR  
Sbjct: 182 KLAIVGRPNVGKSTLVNTLLGEERVIAFDLPGTTRDSIEIPFERDGKHYTLIDTAGIRRR 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   +EK  + +T   +  A+++LLL  ++++++IS
Sbjct: 242 GKVFEAIEKFSVVKTLQSISEANVVLLL--LDAQQDIS 277



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 32/165 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALIGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKEINSKKEISFPKN---IDFIFIGTKSDL-- 331
           + V KEGI     K+T   V  AD+++ +  ++ ++ ++ P +    DF+    +S +  
Sbjct: 61  EPVAKEGIMHEMAKQTKQAVAEADVVIFI--VDGRQGLT-PHDKTITDFLRKSGRSVMLV 117

Query: 332 --------YSTYTEEY-------DHLISSFTGEGLEELINKIKSI 361
                   Y+T T ++        ++IS+  G+G+ +L+ +  +I
Sbjct: 118 VNKAEGMKYTTVTADFYELGMGDPYVISAAHGDGVNDLVEEALNI 162


>gi|153001514|ref|YP_001367195.1| GTP-binding protein EngA [Shewanella baltica OS185]
 gi|160876250|ref|YP_001555566.1| GTP-binding protein EngA [Shewanella baltica OS195]
 gi|217972557|ref|YP_002357308.1| GTP-binding protein EngA [Shewanella baltica OS223]
 gi|304410031|ref|ZP_07391650.1| ribosome-associated GTPase EngA [Shewanella baltica OS183]
 gi|307302256|ref|ZP_07582014.1| ribosome-associated GTPase EngA [Shewanella baltica BA175]
 gi|166225855|sp|A6WQP3|DER_SHEB8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037160|sp|A9KWW9|DER_SHEB9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783166|sp|B8E9T1|DER_SHEB2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|151366132|gb|ABS09132.1| small GTP-binding protein [Shewanella baltica OS185]
 gi|160861772|gb|ABX50306.1| small GTP-binding protein [Shewanella baltica OS195]
 gi|217497692|gb|ACK45885.1| small GTP-binding protein [Shewanella baltica OS223]
 gi|304351440|gb|EFM15839.1| ribosome-associated GTPase EngA [Shewanella baltica OS183]
 gi|306914294|gb|EFN44715.1| ribosome-associated GTPase EngA [Shewanella baltica BA175]
 gi|315268439|gb|ADT95292.1| ribosome-associated GTPase EngA [Shewanella baltica OS678]
          Length = 488

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ EG    I DTAG+R  
Sbjct: 200 KLAIIGKPNVGKSTLTNRILGEERVVVFDEPGTTRDSIYIPMEREGREYVIIDTAGVRRR 259

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +   ++EK  + +T   VE+A+++LL+  I++++ I+
Sbjct: 260 SKVHQVIEKFSVIKTLKAVEDANVVLLI--IDAREGIA 295



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E +  +++   +E AD++L + +  +
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARA 93


>gi|304382194|ref|ZP_07364702.1| ribosome-associated GTPase EngA [Prevotella marshii DSM 16973]
 gi|304336659|gb|EFM02887.1| ribosome-associated GTPase EngA [Prevotella marshii DSM 16973]
          Length = 437

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    D  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRK 236

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
           + + E      + R+   +EN+D+ +L+
Sbjct: 237 NKVTEDLEFYSVMRSIRAIENSDVCILM 264



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L K   AIV+D  GTTRD      +  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTKSRRAIVSDEAGTTRDRQYGKCEWNGREFSVVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DDI E    K+  +  E ADL+L L +I +
Sbjct: 65  DDIFEDAIRKQVIVATEEADLVLFLVDITN 94


>gi|291557289|emb|CBL34406.1| ribosome-associated GTPase EngA [Eubacterium siraeum V10Sc8a]
          Length = 439

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N +A +   IV++I GTTRD +   ++ +G    + DTAGIR  
Sbjct: 179 KVAVIGKPNAGKSSLVNKIAGEQRMIVSNIAGTTRDAVDTVIERDGQEYVLIDTAGIRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + R ++ ++ AD+ +++
Sbjct: 239 SKVNEQIEKYSVLRAYMAIDRADVCVIM 266



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN +  K ++IV D PG TRD +    +  G    + DT GI  ++
Sbjct: 5   VAVVGRPNVGKSTLFNRIVGKRMSIVDDTPGVTRDRIYAKAEWLGKEFMLVDTGGIEPDS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D++  +   +  L ++ AD+I+ + ++ S
Sbjct: 65  KDVILSQMRMQAQLAIDKADVIIFVTDVTS 94


>gi|241764499|ref|ZP_04762520.1| small GTP-binding protein [Acidovorax delafieldii 2AN]
 gi|241366083|gb|EER60680.1| small GTP-binding protein [Acidovorax delafieldii 2AN]
          Length = 462

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ + G  N GKS+L N    ++  +  D+PGTTRD +T+  +  G   ++ DTAG+R  
Sbjct: 196 KLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAITVPFERNGQRFELVDTAGLRRK 255

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +E+A+++LLL
Sbjct: 256 GKVFEAIEKFSVVKTLQAIESANVVLLL 283



 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD    +     +   + DT G   + 
Sbjct: 20  IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGKQGKHEYIVIDTGGFEPDA 79

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
              + +E  K+T   V  AD+++ +
Sbjct: 80  SSGIYREMAKQTQQAVAEADVVIFV 104


>gi|221066038|ref|ZP_03542143.1| small GTP-binding protein [Comamonas testosteroni KF-1]
 gi|220711061|gb|EED66429.1| small GTP-binding protein [Comamonas testosteroni KF-1]
          Length = 446

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ + G  NAGKS+L N    ++  +  D+PGTTRD +T+  +  G   ++ DTAG+R  
Sbjct: 182 RLAVAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAITVPFERNGQKFELIDTAGLRRK 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +E A+++LLL
Sbjct: 242 GKVFEAIEKFSVVKTLQAIEGANVVLLL 269



 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD          +   + DT G   + 
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
              + KE  K+T   V  AD+++ +
Sbjct: 65  SRGIFKEMAKQTQQAVAEADVVIFV 89


>gi|317128566|ref|YP_004094848.1| ribosome-associated GTPase EngA [Bacillus cellulosilyticus DSM
           2522]
 gi|315473514|gb|ADU30117.1| ribosome-associated GTPase EngA [Bacillus cellulosilyticus DSM
           2522]
          Length = 438

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKSSL NA+  ++  IV+DIPGTTRD +      +G    + DTAG+R+ 
Sbjct: 177 RISIIGRPNVGKSSLTNAILGEERVIVSDIPGTTRDAIDTPFSKDGQDYVVIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E +D++L++
Sbjct: 237 GKVYESTEKYSVLRALRAIERSDVVLMV 264



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + +AIV D PG TRD +    +       I DT GI   D
Sbjct: 6   LAIVGRPNVGKSTIFNRIVGERIAIVEDKPGVTRDRIYSSAEWLNKEFNIIDTGGIEIND 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           + +  +   +  L +E AD+I  +  +N ++ I+
Sbjct: 66  EPLMVQMRYQAELAIEEADVICFI--VNGREGIT 97


>gi|154494318|ref|ZP_02033638.1| hypothetical protein PARMER_03672 [Parabacteroides merdae ATCC
           43184]
 gi|154085762|gb|EDN84807.1| hypothetical protein PARMER_03672 [Parabacteroides merdae ATCC
           43184]
          Length = 437

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKSSL NA   +D  IVTDI GTTRD +    +  G    + DTAGIR+ 
Sbjct: 177 RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +EN+D+ +L+
Sbjct: 237 GKVNEDLEYYSVIRSIRAIENSDVCVLM 264



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L +   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTQTRQAIVNEEAGTTRDRQYGKAEWTGKEFSLIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +DD+ E+E  K+  + +E AD+IL + ++
Sbjct: 62  INSDDVFEEEINKQVKVALEEADVILFVVDV 92


>gi|255014874|ref|ZP_05287000.1| GTP-binding protein EngA [Bacteroides sp. 2_1_7]
 gi|256840958|ref|ZP_05546465.1| ribosome-associated GTPase EngA [Parabacteroides sp. D13]
 gi|298375727|ref|ZP_06985683.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_19]
 gi|256736801|gb|EEU50128.1| ribosome-associated GTPase EngA [Parabacteroides sp. D13]
 gi|298266764|gb|EFI08421.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_19]
          Length = 437

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKSSL NA   +D  IVTDI GTTRD +    +  G    + DTAGIR+ 
Sbjct: 177 RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +EN+D+ +L+
Sbjct: 237 GKVNEDLEYYSVIRSIRAIENSDVCVLM 264



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L     AIV +  GTTRD     ++  G    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             ++D+ E+E  K+  + +E AD+IL + ++
Sbjct: 62  VNSEDVFEEEINKQVKVAIEEADVILFVVDV 92


>gi|209964703|ref|YP_002297618.1| GTP-binding protein EngA [Rhodospirillum centenum SW]
 gi|209958169|gb|ACI98805.1| GTP-binding protein, putative [Rhodospirillum centenum SW]
          Length = 478

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L G  + + DTAG+ E  
Sbjct: 10  VAIVGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDWRAGEARLAGIELTVVDTAGLEEVF 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DD +E    ++T   +E AD+ L L
Sbjct: 70  DDSLEARMRRQTERAIERADVALFL 94



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ I+G  N GKS+L NAL  ++  +     G TRD + ++ +  G  V++ DTAG+R  
Sbjct: 212 QLAIVGRPNVGKSTLLNALVGEERVLTGPEAGMTRDAIAVEWNWRGQPVRLVDTAGLRRR 271

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
              D  +EK  +  T   +  A +++L+
Sbjct: 272 ARVDGKLEKLAVADTLRVIRMAHVVVLV 299


>gi|188533178|ref|YP_001906975.1| GTP-binding protein EngA [Erwinia tasmaniensis Et1/99]
 gi|238689730|sp|B2VE93|DER_ERWT9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|188028220|emb|CAO96078.1| GTP-binding protein [Erwinia tasmaniensis Et1/99]
          Length = 499

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 212 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKR 271

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VEK  + +T   +E+A++++L+
Sbjct: 272 GKVTETVEKFSVIKTLQAIEDANVVMLV 299



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGNE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L +
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFM 88


>gi|251796400|ref|YP_003011131.1| GTP-binding protein EngA [Paenibacillus sp. JDR-2]
 gi|247544026|gb|ACT01045.1| small GTP-binding protein [Paenibacillus sp. JDR-2]
          Length = 440

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 8/103 (7%)

Query: 211 KLGEIIRNGY-----KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           KL E+  +GY     ++ ++G  N GKSSL NAL  ++  IV+++ GTTRD +    + +
Sbjct: 163 KLPELEDDGYDDDVIRVALIGRPNVGKSSLVNALLGEERVIVSNVAGTTRDAIDTPFERD 222

Query: 266 GYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           G    + DTAG+R+   +    EK  + R    +E AD++L+L
Sbjct: 223 GQKYVLIDTAGMRKRGKVYESTEKYSVMRALKAIERADVVLVL 265



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS++FN +    +AIV D PG TRD L    +  G    I DT GI  + 
Sbjct: 6   IAIVGRPNVGKSTIFNRVVGDRLAIVEDKPGVTRDRLYSPGEWNGKAFSIVDTGGIEIDG 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +D + K    +  L +E AD+I+ +
Sbjct: 66  EDEIMKSVRMQAELAIEEADVIIFM 90


>gi|74316616|ref|YP_314356.1| GTP-binding protein EngA [Thiobacillus denitrificans ATCC 25259]
 gi|123773049|sp|Q3SL66|DER_THIDA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|74056111|gb|AAZ96551.1| GTP-binding protein [Thiobacillus denitrificans ATCC 25259]
          Length = 469

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS+L NAL   +  I  D PGTTRD + +D +  G    + DTAG+R  
Sbjct: 177 KIALVGRPNVGKSTLVNALVGAERVIAFDQPGTTRDSIYVDFERGGKPYVLIDTAGVRRR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A++++L+  +++++ IS
Sbjct: 237 GKVFETVEKFSVIKTLQAIEDANVVVLV--LDARENIS 272



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           +V++G  N GKS+LFN L     A+V D+PG TRD       + G    + DT G+    
Sbjct: 5   LVLVGRPNVGKSTLFNRLTGTRDALVHDLPGMTRDRHYGRGRIGGKPYLVVDTGGLEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D +  E  ++T   ++ AD I+ +
Sbjct: 65  KDGILAEMARQTLQAIDEADAIIFM 89


>gi|300717947|ref|YP_003742750.1| GTP-binding protein [Erwinia billingiae Eb661]
 gi|299063783|emb|CAX60903.1| GTP-binding protein [Erwinia billingiae Eb661]
          Length = 495

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 210 KLAIVGRPNVGKSTLTNRILGEDRVVVFDAPGTTRDSIYIPMERDGREYILIDTAGVRKR 269

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 270 GKVTETVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 305



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD      ++EG      DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGQQFICIDTGGIDGNE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE     ++ L +E AD++L +
Sbjct: 65  EGVETRMAAQSLLAIEEADVVLFM 88


>gi|262037969|ref|ZP_06011387.1| ribosome-associated GTPase EngA [Leptotrichia goodfellowii F0264]
 gi|261748010|gb|EEY35431.1| ribosome-associated GTPase EngA [Leptotrichia goodfellowii F0264]
          Length = 439

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  I ILG  NAGKSSL N L  ++ +IV+DI GTTRD +   L  +G +  + DTAGIR
Sbjct: 175 GLCIAILGRPNAGKSSLINKLLNEERSIVSDIAGTTRDAIDSTLKYDGEIYTLIDTAGIR 234

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305
              + +D +E   + R    ++  D+ +L+
Sbjct: 235 RKSKIEDSIEYYSVLRAVKSIKRVDVCVLM 264



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    ++IV D PG TRD L  + +  G    + DT G+  +T
Sbjct: 5   VAIVGRPNVGKSTLFNKLVGDRLSIVKDEPGVTRDRLYRETEWSGKNFILVDTGGLEPKT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DD + ++  ++  + ++ AD+++ L
Sbjct: 65  DDFMMRKIKEQAQVAIDEADVVIFL 89


>gi|283779752|ref|YP_003370507.1| small GTP-binding protein [Pirellula staleyi DSM 6068]
 gi|283438205|gb|ADB16647.1| small GTP-binding protein [Pirellula staleyi DSM 6068]
          Length = 486

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++VI+G  N GKSSL N LA K ++IV D  G TRD +T  ++ EG   ++ DT GI   
Sbjct: 5   QVVIVGRPNVGKSSLLNWLAGKRISIVDDTAGVTRDRITYLMEEEGRFFELVDTGGIGIV 64

Query: 281 D-DIVEKEGIKRTFLEVENADLILLLKEINS 310
           D D + K+  ++  + +E+ADL+L + +  S
Sbjct: 65  DCDNLTKQVEQQIEIAIESADLVLFVVDTRS 95



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 28/177 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I G  N GKS+  N LA+ +  IV+++ GTTRD + +  +L+G      DT G+R  
Sbjct: 180 KVAICGRRNTGKSTFVNTLARAERVIVSEVAGTTRDSIDVRFELDGKTFMAIDTPGLRRN 239

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI-----DFIFIGTKS 329
             +   ++     R    +  AD++LL    K+  SK +    K I       IF+  K 
Sbjct: 240 RSVRTDIDFYSTHRAQRSIRRADVVLLFFDCKQRLSKVDKQLCKYIADNYRPCIFVVNKW 299

Query: 330 DLY--STYTEEY-DHLISSF--------------TGEGLEELINKIKSILSNKFKKL 369
           DL      TE + D+L  +F              TG+ ++ L+N  + +     +++
Sbjct: 300 DLLYGQMPTERWVDYLRDNFPTMWHVPIAFVTGQTGKNVKALLNHAQMLYKQSLERV 356


>gi|28210831|ref|NP_781775.1| GTP-binding protein EngA [Clostridium tetani E88]
 gi|37999662|sp|Q895X8|DER_CLOTE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|28203269|gb|AAO35712.1| GTP-binding protein [Clostridium tetani E88]
          Length = 438

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D PG TRD +    +   +   I DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVEDTPGVTRDRIYAQAEWLNHNFTIIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+  +  ++  + +E AD+I+ +
Sbjct: 66  EDIIVAQMRRQAEMAIEMADVIMFI 90



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I  +G  N GKSSL N +  ++  IV++IPGTTRD +   L+ +     + DTAG+R  
Sbjct: 178 RIAFVGKPNVGKSSLINKILGEERNIVSNIPGTTRDAIDSFLERDEDKFILIDTAGLRRR 237

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +  D +E+    RT+  ++ AD+ +LL
Sbjct: 238 SKVKDQIERYSTVRTYAAIDRADVCILL 265


>gi|300726752|ref|ZP_07060182.1| ribosome-associated GTPase EngA [Prevotella bryantii B14]
 gi|299775865|gb|EFI72445.1| ribosome-associated GTPase EngA [Prevotella bryantii B14]
          Length = 437

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    D  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTKYDKFGFDFYLVDTAGIRRK 236

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
           + + E      + R+   +EN+D+ +L+
Sbjct: 237 NKVTEDLEFYSVMRSIRAIENSDVCILM 264



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN   +   AIV+D  GTTRD     +   G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRFTQSRRAIVSDTAGTTRDRQYGKVSWNGKDFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI E    ++  +  E ADL+L L
Sbjct: 65  DDIFEDAIRRQVLVATEEADLVLFL 89


>gi|218262398|ref|ZP_03476878.1| hypothetical protein PRABACTJOHN_02553 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223401|gb|EEC96051.1| hypothetical protein PRABACTJOHN_02553 [Parabacteroides johnsonii
           DSM 18315]
          Length = 437

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKSSL NA   +D  IVTDI GTTRD +    +  G    + DTAGIR+ 
Sbjct: 177 RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +EN+D+ +L+
Sbjct: 237 GKVNEDLEYYSVIRSIRAIENSDVCVLM 264



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L +   AIV +  GTTRD     ++       + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTQTRQAIVNEEAGTTRDRQYGKVEWTSKEFSLIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +DD+ E+E  K+  + +E AD+IL + ++
Sbjct: 62  INSDDVFEEEINKQVKIALEEADVILFVVDV 92


>gi|312131342|ref|YP_003998682.1| ribosome-associated gtpase enga [Leadbetterella byssophila DSM
           17132]
 gi|311907888|gb|ADQ18329.1| ribosome-associated GTPase EngA [Leadbetterella byssophila DSM
           17132]
          Length = 437

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ILG  NAGKSS  NAL  KD +IVTDI GTTRD +     + G    ++DTAGIR+ 
Sbjct: 179 RIAILGRPNAGKSSFLNALLGKDRSIVTDIAGTTRDAIDTRYKMFGKDFILTDTAGIRKK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   ++ +D+ ++L
Sbjct: 239 AKVNEDLEFYSVLRSIKALDKSDVCIIL 266



 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++ VAI  + PG TRD    +         + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIEERVAITDNQPGVTRDRHYGNAFWLKKHFTLIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DD  E+    +  L +E A +IL +
Sbjct: 65  DDTFEEAIRSQVELAIEEATVILFV 89


>gi|281421766|ref|ZP_06252765.1| ribosome-associated GTPase EngA [Prevotella copri DSM 18205]
 gi|281404261|gb|EFB34941.1| ribosome-associated GTPase EngA [Prevotella copri DSM 18205]
          Length = 437

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCSWNGREFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DDI E    K+  +  E ADL+L L ++N+
Sbjct: 65  DDIFEDAIRKQVLVATEEADLVLFLVDVNT 94



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    D  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 237 NKVSEDLEFYSVMRSIRAIENSDVCILM 264


>gi|296104190|ref|YP_003614336.1| GTP-binding protein EngA [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058649|gb|ADF63387.1| GTP-binding protein EngA [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 511

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 225 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 284

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D+VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 285 GKITDVVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 320



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 25  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 84

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 85  DGVETRMAEQSLLAIEEADVVLFM 108


>gi|329904161|ref|ZP_08273691.1| GTP-binding protein EngA [Oxalobacteraceae bacterium IMCC9480]
 gi|327548117|gb|EGF32835.1| GTP-binding protein EngA [Oxalobacteraceae bacterium IMCC9480]
          Length = 340

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 9/107 (8%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           LG+ IR    I I+G  N GKS++ N L  ++  I  D+PGTTRD + I  +  G    +
Sbjct: 131 LGKAIR----IAIVGRPNVGKSTMVNTLLGEERVIAFDMPGTTRDSIEIPFERSGQQYTL 186

Query: 272 SDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            DTAGIR    +   +EK  + +T   +  A+++LLL  ++++++IS
Sbjct: 187 IDTAGIRRRGKVFEAIEKFSVVKTLQSISEANVVLLL--LDAQQDIS 231


>gi|323453254|gb|EGB09126.1| hypothetical protein AURANDRAFT_37344 [Aureococcus anophagefferens]
          Length = 540

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 11/134 (8%)

Query: 191 EVLNDIL-FLKNDISSHISQGKLGEII--RNGYKIVILGHSNAGKSSLFNAL--AKKDVA 245
           EVL+ +L  L   I +  +Q K  + I  +    +  LG  N GKSSL N      +  A
Sbjct: 228 EVLDALLPALDASIEAKAAQIKTMDAIDAKPHVNVCFLGRPNVGKSSLLNRFLGPGETRA 287

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE----TDDIVEKEGIKRTFLEVENADL 301
           IV+D+ GTTRD +  +LD++G + +  DTAG+R     T    E E + R       AD+
Sbjct: 288 IVSDVAGTTRDAVDAELDVDGTIFRFVDTAGVRRKARVTKQGTEPEMVARALRTARLADV 347

Query: 302 ILLLKEINSKKEIS 315
           +LL+  +++ +E+S
Sbjct: 348 VLLV--VDATQELS 359


>gi|308234454|ref|ZP_07665191.1| small GTP-binding protein [Atopobium vaginae DSM 15829]
 gi|328944301|ref|ZP_08241765.1| ribosome-associated GTPase EngA [Atopobium vaginae DSM 15829]
 gi|327491220|gb|EGF22995.1| ribosome-associated GTPase EngA [Atopobium vaginae DSM 15829]
          Length = 438

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL N L++   ++V D  GTTRD + I  D +G  +++ DTAG+R+  
Sbjct: 181 IAVIGRPNVGKSSLVNKLSRSQRSLVADYAGTTRDAIDITFDYKGQTIRLVDTAGMRKKT 240

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   VE   + R    ++ AD+ LL+
Sbjct: 241 QVHEDVEYYSMVRGLQAMDKADVCLLV 267



 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LA    AIV +  G TRD      D  G    + DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLVNRLATTKSAIVHESRGVTRDRSYHACDWNGREFTLIDTGGI---E 62

Query: 282 DIVEKE----GIK-RTFLEVENADLILLL 305
            +  K+    GI+ +  L  + AD+I+++
Sbjct: 63  SLKSKDRFALGIREQALLGCDEADVIVMV 91


>gi|88809283|ref|ZP_01124792.1| GTP-binding protein EngA [Synechococcus sp. WH 7805]
 gi|88787225|gb|EAR18383.1| GTP-binding protein EngA [Synechococcus sp. WH 7805]
          Length = 455

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD +   L  E    ++ DTAGIR  
Sbjct: 179 QLAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTSLVRENRPWRLVDTAGIRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  +E +D+ +L+
Sbjct: 239 RSVSYGPEFFGINRSFKAIERSDVCVLV 266



 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 30/61 (49%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L     AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCHSREAIVHDEPGVTRDRTYQDGYWSDREFKVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|325294541|ref|YP_004281055.1| GTP-binding protein engA [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325064989|gb|ADY72996.1| GTP-binding protein engA [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 478

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 51/84 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSLFN L +K VAI+ D PG TRD +  + D++ + V + DT G+  + 
Sbjct: 7   ISIVGRPNVGKSSLFNRLLEKKVAIIDDTPGVTRDRIVQEADIDDHKVILVDTGGVDTSG 66

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   KE  ++    +E AD+I+ +
Sbjct: 67  EGFAKETTEQAKRAMEEADIIVFV 90



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L NAL  ++ AIV+DIPGTTRD +     +        DTAGIR  
Sbjct: 222 KVAIVGRPNMGKSTLLNALVGEERAIVSDIPGTTRDAIDTYAKIGDDEFIFIDTAGIRRR 281

Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305
             I  +E     R    ++ AD+++LL
Sbjct: 282 GKIKDIEYYSYLRALDAIDRADVVVLL 308


>gi|120437317|ref|YP_863003.1| GTP-binding protein EngA [Gramella forsetii KT0803]
 gi|166198719|sp|A0M5P1|DER_GRAFK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|117579467|emb|CAL67936.1| GTP-binding protein EngA [Gramella forsetii KT0803]
          Length = 434

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGIRRK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +EN D+ L++
Sbjct: 236 SKVKENLEFYSVMRSVRAIENCDVCLVV 263



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+ FN L ++  AI+  + G TRD      D  G    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTFFNRLIQRREAIIDSVSGVTRDRHYGKSDWNGKKFSLIDTGGYV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +DDI E E  K+  L ++ AD I+ + ++ S
Sbjct: 62  KGSDDIFEAEIDKQVELAIDEADAIIFIVDVES 94


>gi|292806650|gb|ADE42455.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|262280930|ref|ZP_06058713.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257830|gb|EEY76565.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 469

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N L  +D  +  D PGTTRD + I  + +G    + DTAG+R
Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVR 235

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305
              + D+++EK  I +T   +++A +I+++
Sbjct: 236 RKGKVDEMIEKFSIVKTLQAIKDAHVIVVV 265



 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN + K   A+V D  G TRD
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39


>gi|24374819|ref|NP_718862.1| GTP-binding protein EngA [Shewanella oneidensis MR-1]
 gi|37999695|sp|Q8EC36|DER_SHEON RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|24349505|gb|AAN56306.1|AE015769_2 GTP-binding protein EngA [Shewanella oneidensis MR-1]
          Length = 487

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ +G    I DTAG+R  
Sbjct: 200 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERDGREYVIIDTAGVRRR 259

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +  +++EK  + +T   VE+A+++LL+
Sbjct: 260 SKVHEVIEKFSVIKTLKAVEDANVVLLI 287



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E +  +++   +E AD++L + +  +
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARA 93


>gi|300724175|ref|YP_003713492.1| GTP-binding protein [Xenorhabdus nematophila ATCC 19061]
 gi|297630709|emb|CBJ91374.1| GTP-binding protein, essential for cell growth [Xenorhabdus
           nematophila ATCC 19061]
          Length = 496

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 211 KLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKR 270

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 271 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 306



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 19/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324
           + VE     ++ + +E AD++L +               K + S+++ +F      D I 
Sbjct: 65  EGVETHMAAQSLMAIEEADIVLFMVDARSGLMPADHAIAKHLRSREKATFLVANKTDGID 124

Query: 325 IGTK-SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           I T  ++ YS    +  + I++  G G+ +LI ++    S+K
Sbjct: 125 IETSVAEFYSLGLGDI-YSIAASHGRGVTQLIERVLRPFSDK 165


>gi|56461130|ref|YP_156411.1| GTP-binding protein EngA [Idiomarina loihiensis L2TR]
 gi|81821723|sp|Q5QYB3|DER_IDILO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|56180140|gb|AAV82862.1| GTPase EngA [Idiomarina loihiensis L2TR]
          Length = 479

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      + +GY   + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYQFIVIDTGGIHGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +++E  K++ L V+ AD++L +
Sbjct: 65  EGIDEEMAKQSLLAVDEADVVLFM 88



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +        + DTAG+R  
Sbjct: 193 KLAIVGRPNVGKSTLINRILGEERVVVYDMPGTTRDSVYIPMQRNEREYVLIDTAGVRRR 252

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   +EK  + +T   +E+A+++L++  +++++ IS
Sbjct: 253 GRIGEAIEKFSVVKTLQAIEDANVVLIV--VDARETIS 288


>gi|281425284|ref|ZP_06256197.1| hypothetical protein HMPREF0971_02256 [Prevotella oris F0302]
 gi|299141484|ref|ZP_07034620.1| ribosome-associated GTPase EngA [Prevotella oris C735]
 gi|281400577|gb|EFB31408.1| ribosome-associated GTPase EngA [Prevotella oris F0302]
 gi|298576820|gb|EFI48690.1| ribosome-associated GTPase EngA [Prevotella oris C735]
          Length = 437

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    D  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 237 NKVSEDLEFYSVMRSIRAIENSDVCILM 264



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD              + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCSWNAKEFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E    ++  +  E ADL+L L ++ +           I     +  I +  K D  
Sbjct: 65  DDIFEDAIRRQVLVATEEADLVLFLVDVTTGVTDWDEDVATILRRAKLPVILVANKVDNS 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKI 358
           S Y E  +           IS+ TG G  +L++ I
Sbjct: 125 SEYYEAAEFYKLGIGEPQCISAATGGGTGDLLDMI 159


>gi|170076756|ref|YP_001733394.1| GTP-binding protein EngA [Synechococcus sp. PCC 7002]
 gi|238692797|sp|B1XLH8|DER_SYNP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169884425|gb|ACA98138.1| GTPase of unknown function [Synechococcus sp. PCC 7002]
          Length = 453

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL NAL  +  AIV+ I GTTRD +   ++  G   ++ DTAGIR   
Sbjct: 179 VAIIGRPNVGKSSLLNALTGEQRAIVSPISGTTRDAIDTIIERNGQQYRLIDTAGIRRKK 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEI 308
           ++    E   I R F  +  AD++L + ++
Sbjct: 239 NVDYGAEFFSINRAFKAIRRADVVLFVIDV 268



 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I ++G  N GKS+L N +A    AIV D PG TRD        +    +I DT GI
Sbjct: 6   IAVIGRPNVGKSTLVNRIAGDQQAIVHDQPGITRDRTYRPGFWQDRNFQIVDTGGI 61


>gi|168182597|ref|ZP_02617261.1| ribosome-associated GTPase EngA [Clostridium botulinum Bf]
 gi|237795959|ref|YP_002863511.1| GTP-binding protein EngA [Clostridium botulinum Ba4 str. 657]
 gi|259645868|sp|C3L0M1|DER_CLOB6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|182674194|gb|EDT86155.1| ribosome-associated GTPase EngA [Clostridium botulinum Bf]
 gi|229263345|gb|ACQ54378.1| ribosome-associated GTPase EngA [Clostridium botulinum Ba4 str.
           657]
          Length = 439

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K ++IV D PG TRD +  + +   Y   + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+  +  ++  + +E A++I+ L
Sbjct: 66  EDIIVSQMRRQAQIAIEMANVIIFL 90



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I  +G  N GKSSL N L  ++  IV+DIPGTTRD +   ++ +     + DTAG+R   
Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVNTDFGEFTLIDTAGLRRKS 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   +E+  + RT+  +E AD+ +L+
Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILM 265


>gi|183220801|ref|YP_001838797.1| GTP-binding protein EngA [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189910901|ref|YP_001962456.1| GTP-binding protein EngA [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775577|gb|ABZ93878.1| GTPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779223|gb|ABZ97521.1| GTP-binding protein EngA [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 450

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           KI I+G  N+GKSSL N       A+V+++PGTTRD ++     + + ++I DTAGIR  
Sbjct: 183 KIAIIGKPNSGKSSLLNTFLGYKRAVVSEVPGTTRDSVSDQFFFQNHKLEIIDTAGIRRK 242

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +T + +E    KRT   +  AD+++LL
Sbjct: 243 SKTGESLEFYSYKRTLHSLGEADVVVLL 270



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK--ISDTAGIR- 278
           + I+G  N GKS+LFNA+ +   AI  +  G TRDVL   ++   + +   +SDT G+  
Sbjct: 7   VTIVGRQNVGKSTLFNAILRAQSAITENTAGVTRDVLQKTVERAEFKIPFTLSDTPGLDI 66

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           E  D + KE I+  F  + ++DLIL
Sbjct: 67  ENIDEISKEIIEIAFEHLRHSDLIL 91


>gi|122702869|emb|CAL88624.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE        V+ +DLIL
Sbjct: 69  ALLSKEIKALNLKAVQMSDLIL 90


>gi|113969576|ref|YP_733369.1| GTP-binding protein EngA [Shewanella sp. MR-4]
 gi|117919682|ref|YP_868874.1| GTP-binding protein EngA [Shewanella sp. ANA-3]
 gi|123029832|sp|Q0HKV5|DER_SHESM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225858|sp|A0KUJ9|DER_SHESA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|113884260|gb|ABI38312.1| small GTP-binding protein [Shewanella sp. MR-4]
 gi|117612014|gb|ABK47468.1| small GTP-binding protein [Shewanella sp. ANA-3]
          Length = 488

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ +G    I DTAG+R  
Sbjct: 200 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERDGREYVIIDTAGVRRR 259

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  +++EK  + +T   VE+A+++LL+  I++++ I+
Sbjct: 260 SKVHEVIEKFSVIKTLKAVEDANVVLLI--IDAREGIA 295



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E +  +++   +E AD++L + +  +
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARA 93


>gi|328955502|ref|YP_004372835.1| ribosome-associated GTPase EngA [Coriobacterium glomerans PW2]
 gi|328455826|gb|AEB07020.1| ribosome-associated GTPase EngA [Coriobacterium glomerans PW2]
          Length = 445

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKSSLFN +   + +IV+D+ GTTRD +   +  +  L ++ DTAGIR+  
Sbjct: 181 VAIIGRPNAGKSSLFNKMIGSERSIVSDVAGTTRDAIDTIVRRDARLYRMVDTAGIRKKS 240

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
           ++   VE   + R    ++ AD+ LL+
Sbjct: 241 NVYENVEYYSMVRGLRAIDRADVALLV 267



 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+L N LA+   AIV +  G TRD    D D  G    I DT GI
Sbjct: 5   VAVVGRPNVGKSTLVNRLAQTSEAIVHETRGVTRDRSYHDADWAGREFTIVDTGGI 60


>gi|114046809|ref|YP_737359.1| GTP-binding protein EngA [Shewanella sp. MR-7]
 gi|123131595|sp|Q0HX53|DER_SHESR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|113888251|gb|ABI42302.1| small GTP-binding protein [Shewanella sp. MR-7]
          Length = 488

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ +G    I DTAG+R  
Sbjct: 200 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERDGREYVIIDTAGVRRR 259

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +  +++EK  + +T   VE+A+++LL+
Sbjct: 260 SKVHEVIEKFSVIKTLKAVEDANVVLLI 287



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E +  +++   +E AD++L + +  +
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARA 93


>gi|332703981|ref|ZP_08424069.1| GTP-binding protein engA [Desulfovibrio africanus str. Walvis Bay]
 gi|332554130|gb|EGJ51174.1| GTP-binding protein engA [Desulfovibrio africanus str. Walvis Bay]
          Length = 443

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 27/172 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G +I  LG  NAGKSSL N+L   D  IV+ + GTTRD + +  ++EG      DTAG+
Sbjct: 178 QGLRIAFLGKPNAGKSSLVNSLTGSDRVIVSPVAGTTRDSVDVTFEVEGKRYTFVDTAGV 237

Query: 278 RET---DDIVEKEGIKRTFLEVENADLILLLKEINS------KKEISF--PKNIDFIFIG 326
           R+    +D +E+  + R     + A + +L+ +  +      KK +SF   +   FI + 
Sbjct: 238 RKRTKIEDNLEQFSVLRALKASKKAQITVLVLDAQAGMTTQDKKLLSFLEKEKTPFIAVI 297

Query: 327 TKSDLYS-----TYTEEYDH-----------LISSFTGEGLEELINKIKSIL 362
            K DL          E Y               S+ TG G+ EL+   + +L
Sbjct: 298 NKMDLVPRDERKVAREHYKKELSIASYAPVTFTSAMTGVGVAELLPMAERLL 349



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L +++ AI  D PG TRD +  + DL G  V   DT G+ E +
Sbjct: 5   VAIIGRPNVGKSTLFNRLLRREAAITHDRPGVTRDRIYAETDLGGRKVAFVDTGGL-EME 63

Query: 282 DIVE 285
           + VE
Sbjct: 64  EQVE 67


>gi|282878065|ref|ZP_06286870.1| ribosome-associated GTPase EngA [Prevotella buccalis ATCC 35310]
 gi|281299805|gb|EFA92169.1| ribosome-associated GTPase EngA [Prevotella buccalis ATCC 35310]
          Length = 437

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSSL NA   +D  IVT+I GTTRD +    D  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSLINAFIGEDRHIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +EN+D+ +L+
Sbjct: 237 SKVSEDLEFYSVMRSIRSIENSDVCILM 264



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 18/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSRKAIVSDTAGTTRDRQYGKCSWNGREFSVVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
           DD+ E    ++  +  E ADL+L + ++ +          +I     +  I +G K D  
Sbjct: 65  DDVFEDAIRRQVIVATEEADLVLFMVDVKNGLTDWDADVAQILRRTKLPVILVGNKVDNS 124

Query: 331 -LYSTYTEEY------DHLISSFTGEGLEELIN 356
             Y T  E Y         IS+ TG G  +L++
Sbjct: 125 AEYYTAAEFYRLGLGDPQCISAATGGGTGDLLD 157


>gi|122702471|emb|CAL88426.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 1/89 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
            ++ KE         + +DLIL + ++ S
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDVKS 97


>gi|33860948|ref|NP_892509.1| GTP-binding protein EngA [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|41017012|sp|Q7V2S6|DER_PROMP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|33639680|emb|CAE18850.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 458

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL NA+  +  AIV+DI GTT D +   +  + +L KI DTAGIR   ++
Sbjct: 182 IIGRPNVGKSSLLNAICGEKRAIVSDISGTTTDSIDTLIKKDSHLWKIVDTAGIRRKKNV 241

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E  GI R F  ++ +D+ +L+
Sbjct: 242 KYGTEFFGINRAFKSIDRSDVCVLV 266



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   ++ DT G + E 
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWAGREFQVVDTGGLVFED 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
           D     E   + FL +E A L L + + N
Sbjct: 66  DSEFLPEIRTQVFLALEEASLALFVVDGN 94


>gi|90105796|gb|ABD87833.1| Small GTP-binding protein domain [Rhodopseudomonas palustris
           BisB18]
          Length = 465

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 32/205 (15%)

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           D+LF ++D    +S+           ++ I+G  NAGKS++ N L  ++  + +   GTT
Sbjct: 172 DVLFDEDDDVEGVSEEDFST---RPIRVAIVGRPNAGKSTMINHLLGEERLLTSAEAGTT 228

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK 311
           RD +++++D +G   +I DTAG+R    I   +EK  +      +  A++++L+ +  +K
Sbjct: 229 RDSISVEVDYKGRQFRIFDTAGLRRRSRIEEKLEKLSVADALRAIRFAEVVVLMMDSQNK 288

Query: 312 KEISFPKNIDFI---------------FIGTKSDLYSTYTEEYDHL-----------ISS 345
            E    +  D I                +G ++ L +    + DHL           +S 
Sbjct: 289 FEEQDLRIADLIEREGRALVIAVNKWDLMGKQASLVAGLRADVDHLLPQVKGVPIVAVSG 348

Query: 346 FTGEGLEELINKIKSILSNKFKKLP 370
             GEG++ L+  I+   +   +++P
Sbjct: 349 LMGEGIDRLMKAIEDSYAVWNRRVP 373



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 32/60 (53%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +   I+G  N GKS+LFN L  + +A+V D PG TRD       L      I DTAG+ E
Sbjct: 8   FTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGQGKLGDLEFTIIDTAGLDE 67


>gi|218708645|ref|YP_002416266.1| GTP-binding protein EngA [Vibrio splendidus LGP32]
 gi|254783178|sp|B7VJU2|DER_VIBSL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|218321664|emb|CAV17618.1| GTP-binding protein engA [Vibrio splendidus LGP32]
          Length = 493

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRRR 266

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +I   VEK  + +T   +E+A+++LLL  I++++ IS
Sbjct: 267 KNINETVEKFSVVKTLKAIEDANVVLLL--IDARENIS 302



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD          +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHFSEHDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAEQSLAAIDEADVVLFM 88


>gi|163782118|ref|ZP_02177117.1| GTP binding protein Era [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882650|gb|EDP76155.1| GTP binding protein Era [Hydrogenivirga sp. 128-5-R1-1]
          Length = 431

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E+   G ++ + G  N GKSSL NAL K+D  IV+ + GTTRD + +  +  G    + D
Sbjct: 169 ELSYEGIRLTLAGRPNVGKSSLLNALLKEDRVIVSPVAGTTRDTVEVPFEWNGNKFVLVD 228

Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           TAG+R   ++   VE   + R+   +E++D++ L+
Sbjct: 229 TAGVRRPSNVEYGVEFFSVGRSLKAIESSDVVCLV 263



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 22/158 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--R 278
           ++VI+G  N GKSSLFN +  +  AIV DIPG TRD +    +  G    + DT G+   
Sbjct: 4   RVVIIGRPNVGKSSLFNRIVGRRKAIVEDIPGVTRDSVESKAEWGGKEFLLVDTGGLVPD 63

Query: 279 ETDDIVEKEGIKRTF-LEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKS 329
             D+I+  EG+++T   EVE +D+IL +  +        +EI+   +P     I +  K 
Sbjct: 64  SHDEIL--EGVRKTIEREVERSDVILFVVSVKDGVTPLDEEIARLLYPFGDKVILVVNKV 121

Query: 330 D-------LYSTYTEEYDHL--ISSFTGEGLEELINKI 358
           D       +   Y   + H+  +SS  G G+ EL++++
Sbjct: 122 DTDRDEEVVSEFYQLGFRHVFPVSSVHGRGVGELLDEV 159


>gi|157144555|ref|YP_001451874.1| GTP-binding protein EngA [Citrobacter koseri ATCC BAA-895]
 gi|166224326|sp|A8AD75|DER_CITK8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157081760|gb|ABV11438.1| hypothetical protein CKO_00275 [Citrobacter koseri ATCC BAA-895]
          Length = 490

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R  
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 264 GKVTDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|86145598|ref|ZP_01063928.1| GTP-binding protein EngA [Vibrio sp. MED222]
 gi|85836569|gb|EAQ54695.1| GTP-binding protein EngA [Vibrio sp. MED222]
          Length = 493

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRRR 266

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +I   VEK  + +T   +E+A+++LLL  I++++ IS
Sbjct: 267 KNINETVEKFSVVKTLKAIEDANVVLLL--IDARENIS 302



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD          +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHFSEHDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAEQSLAAIDEADVVLFM 88


>gi|93005486|ref|YP_579923.1| GTP-binding protein EngA [Psychrobacter cryohalolentis K5]
 gi|122415786|sp|Q1QD14|DER_PSYCK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|92393164|gb|ABE74439.1| Small GTP-binding protein domain [Psychrobacter cryohalolentis K5]
          Length = 480

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G K+ I+G  N GKS+L N L  +D  +V D+PGTTRD + I    EG    + DTAG+R
Sbjct: 177 GLKLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIYIPYTREGKDYVLIDTAGVR 236

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305
              + D+ VEK  + +T   +E++++ +++
Sbjct: 237 RRGKIDEKVEKFSVIKTLQAIEDSNVTVIV 266



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN   K   A+V D+ G TRD    D   E     + DT GI E D
Sbjct: 7   VALIGRPNVGKSTLFNQFTKSRQALVADLSGLTRDRQYGDATYEDKAFIVVDTGGIGEAD 66

Query: 282 D---IVEKEGIKRTFLEVENADLILLL 305
           D    ++    ++++  +  AD+I+ +
Sbjct: 67  DGRGDIDDYMSEQSYTAIHEADIIVFV 93


>gi|259907722|ref|YP_002648078.1| GTP-binding protein EngA [Erwinia pyrifoliae Ep1/96]
 gi|224963344|emb|CAX54829.1| GTP-binding protein [Erwinia pyrifoliae Ep1/96]
 gi|283477576|emb|CAY73492.1| GTP-binding protein engA [Erwinia pyrifoliae DSM 12163]
 gi|310764770|gb|ADP09720.1| GTP-binding protein EngA [Erwinia sp. Ejp617]
          Length = 498

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 211 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKR 270

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VEK  + +T   +E+A++++L+
Sbjct: 271 GKVTETVEKFSVIKTLKAIEDANVVMLV 298



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGNE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L +
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFM 88


>gi|212550485|ref|YP_002308802.1| GTP-binding protein EngA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|229710725|sp|B6YQB9|DER_AZOPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|212548723|dbj|BAG83391.1| GTP-binding protein EngA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 437

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 29/178 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV +  GTTRD     ++  G +  I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSHQAIVDEEEGTTRDRQYSKVEWCGQIFSIIDTGGWVLNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-------------FIFIGT 327
           DDI E+E  K+  + +E AD+IL L ++     I    ++D              I +  
Sbjct: 65  DDIFEEEINKQVQIAIEEADIILFLVDV-----IHGTTDLDQQIAALLRREKKLVILVSN 119

Query: 328 KSDLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLP-FSIPS 375
           K+D Y  Y +  +         + +S+  G G  EL++ + S  + K    P  +IP+
Sbjct: 120 KADNYKLYAQSAEFYALGLGDPYNVSAINGSGTGELLDYLISNFTKKVDNKPEITIPA 177



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 17/227 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---R 278
           I I+G  N GKSSL NAL  ++  IVT+I GTTRD +    D  G    + DTAGI   +
Sbjct: 178 IAIVGKPNVGKSSLINALTNEERNIVTNIAGTTRDSIYTLYDKFGLKFYLVDTAGICKKK 237

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338
           + ++  E   I R    +E++D+ +LL  I++ + I   ++I+   I  K++        
Sbjct: 238 KVEENSEYYSIIRAIRSIESSDICILL--IDATQCI-MAQDINIFSIIQKNEKGLIIVVN 294

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQT------VRYL 390
              LI +   + +    N I+   +  F  +P  FS    K+ +Y + Q       +R +
Sbjct: 295 KWDLIQNKNPKTIYTFENAIRQ-RTAPFTDVPIIFSSAQTKKRIYKILQVAKEVYDIRQI 353

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437
           ++ +       L IIA+      ++ GK+     V QL + I   F 
Sbjct: 354 KIPTSQLNRILLPIIAKT--PPPINKGKVVRIKYVTQLTNTIIPSFV 398


>gi|149369730|ref|ZP_01889582.1| GTP-binding protein EngA [unidentified eubacterium SCB49]
 gi|149357157|gb|EDM45712.1| GTP-binding protein EngA [unidentified eubacterium SCB49]
          Length = 433

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 175 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGIRRK 234

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E++D+I+L+
Sbjct: 235 AKVKEDLEFYSVMRSVRAIEHSDVIILV 262



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN + ++  AIV  + G TRD      D  G    + DT G ++ +
Sbjct: 4   VAIVGRPNVGKSTFFNRMIQRREAIVDAVSGVTRDRHYGKSDWNGREFSLIDTGGYVKGS 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DD+ E E  K+  L ++ AD I+ +
Sbjct: 64  DDVFETEIDKQVELAIDEADAIIFM 88


>gi|313901830|ref|ZP_07835252.1| ribosome-associated GTPase EngA [Thermaerobacter subterraneus DSM
           13965]
 gi|313467912|gb|EFR63404.1| ribosome-associated GTPase EngA [Thermaerobacter subterraneus DSM
           13965]
          Length = 454

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN + ++ +AI  D+PG TRD L  D D  G    + DT G+ E D
Sbjct: 5   VAIVGRPNVGKSTLFNRIIERRLAIEDDVPGVTRDRLYADTDWAGREFTLVDTGGLAEGD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D +  +  ++    V  ADL++++
Sbjct: 65  DPLTVQVRRQVEAAVREADLLIMV 88



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 34/199 (17%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            D       G+ GEI      + I+G  N GKSSL N L  ++  +V+DIPGTTRD + +
Sbjct: 171 GDAGDRGPWGETGEI-----AVAIVGRPNVGKSSLVNRLLGEERVVVSDIPGTTRDAVDV 225

Query: 261 DLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENAD---LILLLKEINSKKEI 314
                  + +  DTAG+R      D VE     RT   +  AD   L+L  ++  ++++ 
Sbjct: 226 LWRRGERVFRFIDTAGLRRKSRVKDDVEFYSTLRTQRALARADVACLVLDARDPATEQDK 285

Query: 315 SFPKNI------------DFIFIGTKSDLYSTYTE----EYDHL-------ISSFTGEGL 351
                I             +  +    D    Y E    EYD L       +S+ TG+ +
Sbjct: 286 RIAGMILEEGKACVLAVNKWDLVAKGPDTADQYREALYREYDFLQFAPVVFLSALTGQRV 345

Query: 352 EELINKIKSILSNKFKKLP 370
           + L+  +     N  +++P
Sbjct: 346 DRLVEVLAGAAENHRRRVP 364


>gi|256370714|ref|YP_003108539.1| GTP-binding protein EngA [Candidatus Sulcia muelleri SMDSEM]
 gi|256009506|gb|ACU52866.1| GTP-binding protein EngA [Candidatus Sulcia muelleri SMDSEM]
          Length = 438

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N L KK+  IV++I GTTRD L +     G    + DTAGIR+ 
Sbjct: 181 KLAIVGRPNVGKSTLINTLLKKNQNIVSNISGTTRDSLEVFYKKFGIECILVDTAGIRKK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + I   +E   + R    ++N+D+ LLL
Sbjct: 241 NKIKENIEFYSVMRAIKSIKNSDVCLLL 268



 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G SN GKS+LFN L     +IV    G TRD      +  G    + DT G   + 
Sbjct: 5   VSIVGRSNVGKSTLFNRLIGYKKSIVNSKSGVTRDRNYGFCNWNGIDFCLIDTGGYTNKF 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           ++I +K+  ++ F  +E +DLIL L
Sbjct: 65  NNIFDKKICEQFFFALEESDLILFL 89


>gi|213649667|ref|ZP_03379720.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 136

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|88802177|ref|ZP_01117705.1| GTP-binding protein EngA [Polaribacter irgensii 23-P]
 gi|88782835|gb|EAR14012.1| GTP-binding protein EngA [Polaribacter irgensii 23-P]
          Length = 436

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  KD  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 178 RFAVVGRPNAGKSSFINALIGKDRNIVTNIAGTTRDSIDTKYNRFGFDFNLVDTAGIRKK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    +E AD+I+L+
Sbjct: 238 SKVKEDLEFYSVMRAVRSIEYADVIILV 265



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L ++  AIV  + G TRD      D  G    + DT G    +
Sbjct: 5   VAIVGRPNVGKSTLFNRLVQRRDAIVDSVSGVTRDRHYGKSDWNGKEFSVIDTGGYSIGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           DDI E+E  K+  L +E AD+I+ + ++
Sbjct: 65  DDIFEEEIRKQVTLAIEEADIIVFVVDV 92


>gi|121604778|ref|YP_982107.1| GTP-binding protein EngA [Polaromonas naphthalenivorans CJ2]
 gi|166225835|sp|A1VNF8|DER_POLNA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|120593747|gb|ABM37186.1| small GTP-binding protein [Polaromonas naphthalenivorans CJ2]
          Length = 445

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG+R  
Sbjct: 181 KLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFEHAGQKFELIDTAGLRRK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +ENA+++LLL
Sbjct: 241 GKVFEAIEKFSVVKTLQAIENANVVLLL 268



 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   AIV D  G TRD    +  L  +   + DT G  E D
Sbjct: 5   IALVGRPNVGKSTLFNRLTKTRDAIVADFAGLTRDRHYGNGKLGPHEYIVIDTGGF-EPD 63

Query: 282 DI--VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  + KE  ++T   V  +D+++ +  ++++  IS
Sbjct: 64  AVTGIYKEMARQTRQAVAESDVVIFV--VDARAGIS 97


>gi|331269697|ref|YP_004396189.1| small GTP-binding protein [Clostridium botulinum BKT015925]
 gi|329126247|gb|AEB76192.1| small GTP-binding protein [Clostridium botulinum BKT015925]
          Length = 438

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D+PG TRD +    +       I DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAQAEWLNNKFTIIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +D++  +  ++  + +E AD++L +
Sbjct: 66  EDVIVAQMRRQAQMAIEMADVVLFI 90



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N +  ++  IV++IPGTTRD +   ++ E     + DTAG+R  
Sbjct: 178 RIAMVGRPNVGKSSLINRILGEEKHIVSNIPGTTRDSVDSYIEREEGKFALIDTAGLRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VE+    RT   +ENAD+ +L+
Sbjct: 238 SKIKEQVERYSAVRTIASIENADVCILM 265


>gi|269797893|ref|YP_003311793.1| small GTP-binding protein [Veillonella parvula DSM 2008]
 gi|269094522|gb|ACZ24513.1| small GTP-binding protein [Veillonella parvula DSM 2008]
          Length = 444

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL  +D  IV+D+ GTTRD +      EG    + DTAG+R   
Sbjct: 181 VAVIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTYWTHEGQKFVLIDTAGMRRKS 240

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            I   VE+  I R+   V+ AD+++L+
Sbjct: 241 KIEEAVERYSIVRSLRSVDRADIVVLV 267



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + ++G  N GKS+LFNA+  K ++IV DIPG TRD +  D +       + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           E   ++ K    +  L +E AD+IL +
Sbjct: 66  ENSHVIPKMMRLQAELAIEEADVILFV 92


>gi|148559467|ref|YP_001258406.1| GTP-binding protein EngA [Brucella ovis ATCC 25840]
 gi|166224311|sp|A5VNV9|DER_BRUO2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|148370724|gb|ABQ60703.1| GTP-binding protein [Brucella ovis ATCC 25840]
          Length = 483

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 24/165 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326
           E  +D +E     +T   +  AD +L +  I++K  I+ P +  F           + + 
Sbjct: 62  EAANDSLEARMRAQTEAAISEADAVLFV--IDAKAGIT-PADSTFAEAVRRSGKPVVLVA 118

Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
            K++   +    YD           IS+  G+G+ +L + I  +L
Sbjct: 119 NKAEARGSEAGMYDAFQLGLGEPCPISAKHGQGMPDLRDAIVELL 163



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N +  +D  +     G TRD ++ D +  G  +K+ DTAG+R  
Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRK 272

Query: 281 DDIVEK 286
             + EK
Sbjct: 273 ARVQEK 278


>gi|28199496|ref|NP_779810.1| GTP-binding protein EngA [Xylella fastidiosa Temecula1]
 gi|182682229|ref|YP_001830389.1| GTP-binding protein EngA [Xylella fastidiosa M23]
 gi|32129520|sp|Q87B41|DER_XYLFT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238691082|sp|B2I7V0|DER_XYLF2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|28057611|gb|AAO29459.1| GTP-binding protein [Xylella fastidiosa Temecula1]
 gi|182632339|gb|ACB93115.1| small GTP-binding protein [Xylella fastidiosa M23]
 gi|307578503|gb|ADN62472.1| GTP-binding protein EngA [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 465

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           I  +G  N GKS+L N L  ++  IV+D+PGTTRD +T+DL+ +    ++ DTAG+R   
Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTRDSITVDLERDELRYRLVDTAGLRRKS 240

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           + ++ VEK    +T   +E   + +LL
Sbjct: 241 KVEEAVEKFSAFKTLQAIEQCQVAVLL 267



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 22/179 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           + ++G  N GKS+LFNAL     A+V D PG TRD       ++G  L  + DT G+   
Sbjct: 5   VALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGGMVGK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTK 328
           +D +     ++  L V  AD++L +  +               +++S P  +    I   
Sbjct: 65  EDGLAGATARQARLAVAEADVVLFVVNVREGASALDDDILAWLRKLSQPTLLVINKIDGV 124

Query: 329 SDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           SD  +T   E+ H        +S+   +GL++LI ++ + L  +     F+  S + H+
Sbjct: 125 SD--TTVHSEFAHYGFSDVVPVSAAHRQGLDDLIEQVLAWLPERSIGEAFNEDSERIHI 181


>gi|118474391|ref|YP_892485.1| GTP-binding protein EngA [Campylobacter fetus subsp. fetus 82-40]
 gi|166224321|sp|A0RQK2|DER_CAMFF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|118413617|gb|ABK82037.1| GTP-binding protein EngA [Campylobacter fetus subsp. fetus 82-40]
          Length = 463

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 67/111 (60%), Gaps = 6/111 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI+++G  N GKSSLFN LAK+ +AI +D+ GTTRD    ++ ++     + D+ G+ ++
Sbjct: 3   KIILVGRPNVGKSSLFNRLAKQRIAITSDVSGTTRDTNKAEIFIDDKNCILIDSGGLDDS 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
           +++ +   I  T  E +NAD+I+ +  ++ K   +FP  ID  F    S+L
Sbjct: 63  NELFKNVKIN-TLNEAKNADIIVFM--VDGK---NFPDEIDKRFFYELSNL 107



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSL NAL K+D ++V+ I GTT D +      E  + +  DTAGIR+ 
Sbjct: 199 KIGIIGRVNVGKSSLLNALVKEDRSVVSKIAGTTIDPVNESYVYEDRVFEFVDTAGIRKR 258

Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305
             I  +E+  + RT   +E AD+ LL+
Sbjct: 259 GKIEGIERLALHRTEKILEEADIALLV 285


>gi|303236880|ref|ZP_07323459.1| ribosome-associated GTPase EngA [Prevotella disiens FB035-09AN]
 gi|302483048|gb|EFL46064.1| ribosome-associated GTPase EngA [Prevotella disiens FB035-09AN]
          Length = 437

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSSL NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSLINAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRRK 236

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
           + + E      + R+   +EN+D+ +L+
Sbjct: 237 NKVTEDLEFYSVMRSIRSIENSDVCILM 264



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCQWNGREFSIVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI E    K+  +  E AD +L L
Sbjct: 65  DDIFEDAIRKQVLVATEEADFVLFL 89


>gi|242240151|ref|YP_002988332.1| GTP-binding protein EngA [Dickeya dadantii Ech703]
 gi|242132208|gb|ACS86510.1| small GTP-binding protein [Dickeya dadantii Ech703]
          Length = 494

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYILIDTAGVRKR 267

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 268 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 303



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++   +E AD++L L
Sbjct: 65  DGVETRMAEQSLQAIEEADIVLFL 88


>gi|162136030|ref|YP_532152.2| GTP-binding protein EngA [Rhodopseudomonas palustris BisB18]
          Length = 460

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 32/205 (15%)

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           D+LF ++D    +S+           ++ I+G  NAGKS++ N L  ++  + +   GTT
Sbjct: 167 DVLFDEDDDVEGVSEEDFST---RPIRVAIVGRPNAGKSTMINHLLGEERLLTSAEAGTT 223

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK 311
           RD +++++D +G   +I DTAG+R    I   +EK  +      +  A++++L+ +  +K
Sbjct: 224 RDSISVEVDYKGRQFRIFDTAGLRRRSRIEEKLEKLSVADALRAIRFAEVVVLMMDSQNK 283

Query: 312 KEISFPKNIDFI---------------FIGTKSDLYSTYTEEYDHL-----------ISS 345
            E    +  D I                +G ++ L +    + DHL           +S 
Sbjct: 284 FEEQDLRIADLIEREGRALVIAVNKWDLMGKQASLVAGLRADVDHLLPQVKGVPIVAVSG 343

Query: 346 FTGEGLEELINKIKSILSNKFKKLP 370
             GEG++ L+  I+   +   +++P
Sbjct: 344 LMGEGIDRLMKAIEDSYAVWNRRVP 368



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 32/60 (53%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +   I+G  N GKS+LFN L  + +A+V D PG TRD       L      I DTAG+ E
Sbjct: 3   FTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGQGKLGDLEFTIIDTAGLDE 62


>gi|317504953|ref|ZP_07962902.1| ribosome-associated GTPase EngA [Prevotella salivae DSM 15606]
 gi|315663945|gb|EFV03663.1| ribosome-associated GTPase EngA [Prevotella salivae DSM 15606]
          Length = 437

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    D  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 237 NKVSEDLEFYSVMRSIRAIENSDVCILM 264



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD              I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCSWNSKEFSIVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           DDI E    ++  +  E ADL+L L ++++      ++++       +  I +  K D  
Sbjct: 65  DDIFEDAIRRQVLVATEEADLVLFLVDVSTGVTDWDEDVAMILRRAKLPVILVANKVDNN 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKI 358
           S Y E  +           IS+ TG G  +L++ I
Sbjct: 125 SEYYEAAEFYKLGLGEPQCISAATGGGTGDLLDLI 159


>gi|261884860|ref|ZP_06008899.1| GTP-binding protein EngA [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 153

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 67/111 (60%), Gaps = 6/111 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI+++G  N GKSSLFN LAK+ +AI +D+ GTTRD    ++ ++     + D+ G+ ++
Sbjct: 3   KIILVGRPNVGKSSLFNRLAKQRIAITSDVSGTTRDTNKAEIFIDDKNCILIDSGGLDDS 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
           +++ +   I  T  E +NAD+I+ +  ++ K   +FP  ID  F    S+L
Sbjct: 63  NELFKNVKIN-TLNEAKNADIIVFM--VDGK---NFPDEIDKRFFYELSNL 107


>gi|261820577|ref|YP_003258683.1| GTP-binding protein EngA [Pectobacterium wasabiae WPP163]
 gi|261604590|gb|ACX87076.1| ribosome-associated GTPase EngA [Pectobacterium wasabiae WPP163]
          Length = 495

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE     ++ + +E AD++L +
Sbjct: 65  DGVETRMAGQSLVAIEEADIVLFM 88



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYILIDTAGVRKR 268

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 269 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 304


>gi|312143158|ref|YP_003994604.1| small GTP-binding protein [Halanaerobium sp. 'sapolanicus']
 gi|311903809|gb|ADQ14250.1| small GTP-binding protein [Halanaerobium sp. 'sapolanicus']
          Length = 409

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 24/162 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  NAGKSSL N+L  + +A+V+++PGTT D +   ++L     V + DTAG
Sbjct: 8   NRPHIAVFGRRNAGKSSLINSLCNQKLALVSEVPGTTTDPVYKAMELLPLGPVMMIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL------------KEINSKKEISFP-----KN 319
           I ++ D+ E   +K+++  +   DL +L+            K +++  + + P       
Sbjct: 68  IDDSGDLGEMR-VKKSYEIIRKTDLAVLVIDNQVEFGKYEQKLLDNFNKTNTPVVAVINK 126

Query: 320 IDFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKI 358
           ID  F   K+++      EYD    L+S+ +G+G+EEL +KI
Sbjct: 127 IDLAF--DKTEVVDKLQREYDLKPILLSAESGQGIEELRDKI 166


>gi|148238904|ref|YP_001224291.1| GTP-binding protein EngA [Synechococcus sp. WH 7803]
 gi|166225928|sp|A5GJ79|DER_SYNPW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|147847443|emb|CAK22994.1| GTP-binding protein engA [Synechococcus sp. WH 7803]
          Length = 455

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD +   L  E    ++ DTAGIR  
Sbjct: 179 QLAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTSLVRENRPWRLVDTAGIRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  +E +D+ +L+
Sbjct: 239 RSVNYGPEFFGINRSFKAIERSDVCVLV 266



 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 30/61 (49%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L     AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCHSREAIVHDEPGVTRDRTYQDGYWGDRDFKVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|298246134|ref|ZP_06969940.1| ribosome-associated GTPase EngA [Ktedonobacter racemifer DSM 44963]
 gi|297553615|gb|EFH87480.1| ribosome-associated GTPase EngA [Ktedonobacter racemifer DSM 44963]
          Length = 474

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           +I I+G  N GKSSL NA+   + +IV+DIPGTTRD +  +L+     +K+ DTAGI   
Sbjct: 192 RIAIVGRPNVGKSSLLNAILGVNRSIVSDIPGTTRDAIDTELEFGDQKIKLVDTAGIRRR 251

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305
                 VEK  + R+   +E  D+ L+L
Sbjct: 252 GRVGVGVEKYSVLRSTRAIERCDVALML 279



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 15/103 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + I+G  N GKS+ FN +  + VAIV D+PGTTRD L  D D  G    + DT G+    
Sbjct: 5   VAIVGRPNVGKSTFFNRMIGERVAIVEDMPGTTRDRLYGDADWNGREFTLIDTGGLELGT 64

Query: 279 -----------ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
                      ++ DI++   + +  L +E AD+I+ + +  S
Sbjct: 65  GIPVGQVGLTGQSGDIMDHV-MSQAQLAIEEADVIVFMVDARS 106


>gi|292806682|gb|ADE42471.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702597|emb|CAL88488.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S ++I      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILSVL 166


>gi|56476106|ref|YP_157695.1| GTP-binding protein EngA [Aromatoleum aromaticum EbN1]
 gi|81821192|sp|Q5P7B7|DER_AZOSE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|56312149|emb|CAI06794.1| GTP-binding protein engA [Aromatoleum aromaticum EbN1]
          Length = 442

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKS+  N+L  ++  I  D+PGTTRD + I  + +G    + DTAG+R  
Sbjct: 178 RIAIVGRPNVGKSTFVNSLLGEERVIAFDMPGTTRDAIAIPFERDGRHYTLIDTAGLRRR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E A++++L+  +++ ++IS
Sbjct: 238 GKVFEAVEKFSVIKTLQAIEQANVVVLV--LDASQDIS 273



 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 39/73 (53%), Gaps = 14/73 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-----LTIDLDLEGYLVKISDTAG 276
           IV++G  N GKS+LFN L K   A+V D PG TRD         D D   YLV   DTAG
Sbjct: 5   IVLVGRPNVGKSTLFNRLTKTRDALVADQPGLTRDRHYGIGRVGDRD---YLV--VDTAG 59

Query: 277 IRETDDIVEKEGI 289
                D V K+GI
Sbjct: 60  F----DPVAKDGI 68


>gi|253682586|ref|ZP_04863383.1| ribosome-associated GTPase EngA [Clostridium botulinum D str. 1873]
 gi|253562298|gb|EES91750.1| ribosome-associated GTPase EngA [Clostridium botulinum D str. 1873]
          Length = 438

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D+PG TRD +    +       I DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAQAEWLNNKFTIIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +D++  +  ++  + +E AD++L +
Sbjct: 66  EDVIVAQMRRQAQMAIEMADVVLFI 90



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N +  ++  IV++IPGTTRD +   ++ E     + DTAG+R  
Sbjct: 178 RIAMVGRPNVGKSSLINRILGEEKHIVSNIPGTTRDSVDSYIEREEGKFALIDTAGLRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VE+    RT   +ENAD+ +L+
Sbjct: 238 SKIKEQVERYSAVRTIASIENADVCILM 265


>gi|227328671|ref|ZP_03832695.1| GTP-binding protein EngA [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 495

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE     ++ + +E AD++L +
Sbjct: 65  DGVETRMAGQSLVAIEEADIVLFM 88



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 268

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 269 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 304


>gi|73856514|gb|AAZ89221.1| putative GTP-binding factor [Shigella sonnei Ss046]
          Length = 503

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+ ++++L+  I++++ IS
Sbjct: 277 GKITDAVEKFSVIKTLQAIEDTNVVMLV--IDAREGIS 312



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 18  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 78  DGVETRMAEQSLLAIEEADVVLFM 101


>gi|328952198|ref|YP_004369532.1| GTP-binding protein engA [Desulfobacca acetoxidans DSM 11109]
 gi|328452522|gb|AEB08351.1| GTP-binding protein engA [Desulfobacca acetoxidans DSM 11109]
          Length = 449

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKS+LFN L ++  A+V D PG TRD L  D+  E +   + DT G  +T+
Sbjct: 5   VALIGRTNVGKSTLFNRLTRQSRALVDDQPGVTRDRLYGDVTWEDHAFLLIDTGGFGDTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           D +     ++  L    ADL+L +  ++ ++EI 
Sbjct: 65  DALSSRVRQQAELAAGEADLVLFM--VDGRQEIQ 96



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ +LG  N GKSS  N +  ++  IV+D PGTTRD +   L  +     + DTAGIR
Sbjct: 174 GIRVAVLGRPNVGKSSFINRVLGEERLIVSDTPGTTRDAIDAPLIWDNRPYVLIDTAGIR 233

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305
               I   +E+  I +    ++ A+++LLL
Sbjct: 234 RRSRIHQNLERGMIWQALRALQRAEVVLLL 263


>gi|315300482|gb|EFU59711.1| ribosome-associated GTPase EngA [Escherichia coli MS 16-3]
          Length = 499

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTR+ + I ++ +G    + DTAG+R+ 
Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRESIYIPMERDGREYVLIDTAGVRKR 272

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 14  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 74  DGVETRMAEQSLLAIEEADVVLFM 97


>gi|224367274|ref|YP_002601437.1| GTPase [Desulfobacterium autotrophicum HRM2]
 gi|223689990|gb|ACN13273.1| GTPase [Desulfobacterium autotrophicum HRM2]
          Length = 405

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 19/151 (12%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +S   L E+ R    IV+ G  NAGKSSL N L +KD+AI ++ PGTT D +T  ++L  
Sbjct: 1   MSTPPLAEMTR----IVLAGVRNAGKSSLMNNLFQKDIAITSETPGTTTDPVTRKIELGK 56

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK-----EINSKKEIS---FP 317
             +  I+DTAG+ +   + E+  I +T   +E ADLIL +         ++KE+      
Sbjct: 57  LGMCAITDTAGLDDAGALGEQR-ILKTRERLETADLILFVSPGDKAPTPAEKELKNWLLE 115

Query: 318 KNIDFIFIGTKSDL-----YSTYTEEYDHLI 343
           KN+ +I + +  DL       T+ E+ + ++
Sbjct: 116 KNLPWIGVISFKDLPRHEEKKTFFEQQEQIV 146


>gi|161986480|ref|YP_311456.2| GTP-binding protein EngA [Shigella sonnei Ss046]
 gi|323169045|gb|EFZ54722.1| small GTP-binding domain protein [Shigella sonnei 53G]
          Length = 490

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+ ++++L+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDTNVVMLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|332880020|ref|ZP_08447704.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332682016|gb|EGJ54929.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 434

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTRYNRFGFEFNLVDTAGIRRK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E++D+ +L+
Sbjct: 236 SKVKEDLEFYSVMRSIRAIEHSDVCILM 263



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 32/178 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L K+  AIV  + G TRD      D  G    + DT G +   
Sbjct: 5   VAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVEFSVIDTGGYLAGG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKNIDFIF 324
           DD  +KE  K+  L ++ AD I+ +  +                 SKK +       F+ 
Sbjct: 65  DDTFQKEIDKQVNLAIDEADAIIFMVNVEDGLTGMDESVAALLRKSKKPV-------FVV 117

Query: 325 IGT------KSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +        + D +  Y   ++HL  ISS  G G  +L++++   L  K +K   ++P
Sbjct: 118 VNKVDSNNRRDDAHEFYALGFEHLFSISSINGSGTGDLLDELVKNLPEKEQKEEENLP 175


>gi|253578391|ref|ZP_04855663.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850709|gb|EES78667.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 441

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKSSL N L  +D  IV+DI GTTRD +   +  +G      DTAG+R  
Sbjct: 179 RIAIVGKPNVGKSSLVNKLLGEDRVIVSDIAGTTRDAVDTRVKWQGKDYIFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E+  + RT   VE AD+++++
Sbjct: 239 GKVKEEIERYSVIRTVTAVERADVVIVM 266



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVTWLDKTFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
            DI+  +  ++  + ++ AD+I+ + +++ 
Sbjct: 66  SDIILSQMREQAQIAIDTADVIIFITDVHQ 95


>gi|302874737|ref|YP_003843370.1| ribosome-associated GTPase EngA [Clostridium cellulovorans 743B]
 gi|307690648|ref|ZP_07633094.1| GTP-binding protein EngA [Clostridium cellulovorans 743B]
 gi|302577594|gb|ADL51606.1| ribosome-associated GTPase EngA [Clostridium cellulovorans 743B]
          Length = 438

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D PG TRD +    +  G    I DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVEDKPGVTRDRIYASSEWVGQEFTIIDTGGIEPKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI+  +  ++  + +E A++I+ +
Sbjct: 66  DDIILAQMRRQALIAIETANVIIFI 90



 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N L  ++  IV++IPGTTRD +   L+ E     + DTAG+R  
Sbjct: 178 KIAMIGKPNVGKSSLINKLLGEERNIVSNIPGTTRDAIDSPLETEIGKFMLIDTAGLRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E+  + RT   +E AD+ +L+
Sbjct: 238 SKVKEEIERYSVIRTLTAIERADVCILM 265


>gi|122702839|emb|CAL88609.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|312173198|emb|CBX81453.1| GTP-binding protein engA [Erwinia amylovora ATCC BAA-2158]
          Length = 499

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 212 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKR 271

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VEK  + +T   +E+A++++L+
Sbjct: 272 GKVTETVEKFSVIKTLKAIEDANVVMLV 299



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGNE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L +
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFM 88


>gi|227112682|ref|ZP_03826338.1| GTP-binding protein EngA [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 495

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE     ++ + +E AD++L +
Sbjct: 65  DGVETRMAGQSLVAIEEADIVLFM 88



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 268

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 269 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 304


>gi|292489043|ref|YP_003531930.1| GTP-binding protein engA [Erwinia amylovora CFBP1430]
 gi|292900172|ref|YP_003539541.1| GTP-binding protein [Erwinia amylovora ATCC 49946]
 gi|291200020|emb|CBJ47145.1| GTP-binding protein [Erwinia amylovora ATCC 49946]
 gi|291554477|emb|CBA22001.1| GTP-binding protein engA [Erwinia amylovora CFBP1430]
          Length = 499

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 212 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKR 271

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VEK  + +T   +E+A++++L+
Sbjct: 272 GKVTETVEKFSVIKTLKAIEDANVVMLV 299



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGNE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L +
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFM 88


>gi|290475995|ref|YP_003468891.1| GTP-binding protein, essential for cell growth [Xenorhabdus
           bovienii SS-2004]
 gi|289175324|emb|CBJ82127.1| GTP-binding protein, essential for cell growth [Xenorhabdus
           bovienii SS-2004]
          Length = 496

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 211 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYILIDTAGVRKR 270

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A+++LL+  +++++ +S
Sbjct: 271 GKVTETVEKFSVIKTLQAIEDANVVLLI--VDAREGVS 306



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           D VE     ++ + +E AD++L + +  S
Sbjct: 65  DGVETHMAAQSLMAIEEADIVLFMVDARS 93


>gi|78186288|ref|YP_374331.1| GTP-binding protein EngA [Chlorobium luteolum DSM 273]
 gi|123583448|sp|Q3B5U3|DER_PELLD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78166190|gb|ABB23288.1| Small GTP-binding protein domain [Chlorobium luteolum DSM 273]
          Length = 436

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + ++  AIV   PG TRD    +   +G   ++ DT G    D
Sbjct: 5   IALVGRPNVGKSTLFNRILREKAAIVDPTPGVTRDRHIAEGHWQGREFRLMDTGGYAPED 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
            ++    +++T + +++AD+I+ L ++ S
Sbjct: 65  GVISTAMLEQTMMAIQDADIIIFLADVRS 93



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSS  NAL   +  IV+ IPGTTRD +      +     + DTAG+R+ 
Sbjct: 178 RLAVIGRPNVGKSSFVNALLGSNRQIVSSIPGTTRDAIDTRFTRKQQEFMLIDTAGLRKR 237

Query: 281 DDI 283
             I
Sbjct: 238 TKI 240


>gi|15639676|ref|NP_219126.1| GTP-binding protein EngA [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025914|ref|YP_001933686.1| GTP-binding protein EngA [Treponema pallidum subsp. pallidum SS14]
 gi|8134438|sp|P96128|DER_TREPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238689339|sp|B2S3S8|DER_TREPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|1732241|gb|AAB38705.1| GTP-binding protein [Treponema pallidum]
 gi|3322993|gb|AAC65658.1| GTP-binding protein [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018489|gb|ACD71107.1| GTP-binding protein [Treponema pallidum subsp. pallidum SS14]
 gi|291060055|gb|ADD72790.1| ribosome-associated GTPase EngA [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 460

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 27/162 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKS+L N L ++ V++V D  GTTRDV+T  ++ + Y   I+DTAGIR+ 
Sbjct: 199 RLAIVGKPNTGKSTLMNYLMRRTVSLVCDRAGTTRDVVTGHVEFKQYKFIIADTAGIRKR 258

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEI------NSKKEIS--FPKNIDFIFIGTKS 329
             +   +E   + R    +   D++L + +         KK +S    +N+  IF+  K 
Sbjct: 259 QKVYESIEYYSVIRAISILNAVDIVLYIVDARDGFSEQDKKIVSQISKRNLGVIFLLNKW 318

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           DL                 EG   LI K K  +   F K+ F
Sbjct: 319 DLL----------------EGSTSLIAKKKRDVRTAFGKMNF 344



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 6/91 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           ++VI+G  N GKS+LFN L  +  +I ++  G TRD +   + L G+ +++ DT+G    
Sbjct: 22  RVVIVGRPNVGKSTLFNRLLGRRRSITSNTSGVTRDSIEETVILRGFPLRLVDTSGFTVF 81

Query: 278 ---RETDDIVEKEGIKRTFLEVENADLILLL 305
              + +   ++   +++T+  ++ AD ILL+
Sbjct: 82  SEKKASRQHIDTLVLEQTYKSIQCADKILLV 112


>gi|168180594|ref|ZP_02615258.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
 gi|226949875|ref|YP_002804966.1| GTP-binding protein EngA [Clostridium botulinum A2 str. Kyoto]
 gi|254783146|sp|C1FSU2|DER_CLOBJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|182668460|gb|EDT80439.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
 gi|226841615|gb|ACO84281.1| ribosome-associated GTPase EngA [Clostridium botulinum A2 str.
           Kyoto]
 gi|322806789|emb|CBZ04358.1| GTP-binding protein EngA [Clostridium botulinum H04402 065]
          Length = 439

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D PG TRD +  + +   Y   + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+  +  ++  + +E A++I+ L
Sbjct: 66  EDIIVSQMRRQAQIAIEMANVIIFL 90



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I  +G  N GKSSL N L  ++  IV+DIPGTTRD +   +D E     + DTAG+R   
Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTEFGEFTLIDTAGLRRKS 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   +E+  + RT+  +E AD+ +L+
Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILM 265


>gi|78217514|gb|ABB36863.1| GTP-binding protein EngA [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 475

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ +LG  NAGKSSL NAL+     IV+D+ GTTRD + I ++L G      DTAG+R  
Sbjct: 210 KLAMLGRPNAGKSSLVNALSGSRRMIVSDVAGTTRDSVDIAVELGGRRYVFVDTAGVRRR 269

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +  D VE+  +  +      AD+ L++
Sbjct: 270 AKIQDPVERYSVNSSLKSTTKADVTLVV 297



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 7/53 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           KI ++G  N GKS+LFN L + + AI  D PG TRD       +EGY VK+ D
Sbjct: 24  KIALIGRPNVGKSTLFNRLIRSNRAITHDRPGVTRD------RMEGY-VKVGD 69


>gi|34558325|ref|NP_908140.1| GTP-binding protein EngA [Wolinella succinogenes DSM 1740]
 gi|41016995|sp|Q7M7W8|DER_WOLSU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|34484044|emb|CAE11040.1| PUTATIVE GTP-BINDING PROTEIN [Wolinella succinogenes]
          Length = 470

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL   + ++V+D+ GTT D +   +++EG  V   DTAGIR  
Sbjct: 202 RVGIIGKVNVGKSSLLNALLGSERSVVSDVAGTTIDPVDESMEIEGQKVLFVDTAGIRRR 261

Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305
             I  +EK  + RT   +E AD+ LL+
Sbjct: 262 GKIEGIEKYALDRTQKALEKADIALLV 288



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I I+G  N GKSSLFN LAK+ +AI +D+ GTTRD+    +++EG  V + DT GI
Sbjct: 4   IAIIGKPNVGKSSLFNRLAKERIAITSDVSGTTRDIKKQVIEIEGNEVLLVDTGGI 59


>gi|332883522|gb|EGK03805.1| GTP-binding protein engA [Dysgonomonas mossii DSM 22836]
          Length = 468

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 11/92 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD---LEGYLVKISDTAGI 277
           +I I+G  NAGKSSL NAL  ++  IVT+I GTTRD +    D   L+ YLV   DTAGI
Sbjct: 208 RIAIVGRPNAGKSSLVNALMDEERNIVTNIAGTTRDSIYTRFDKFNLDFYLV---DTAGI 264

Query: 278 RE----TDDIVEKEGIKRTFLEVENADLILLL 305
           R+    T+D+ E   + R+   +EN+D+ +L+
Sbjct: 265 RKKGKVTEDL-EYYSVIRSIKAIENSDVCVLM 295



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L +   AIV +  GTTRD     ++  G    + DT G +
Sbjct: 33  GNLVAIVGRPNVGKSTLFNRLTESRQAIVDETSGTTRDRQYGKVEWGGQDFSLVDTGGWV 92

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             ++D+ E E  K+  + +E AD+IL + ++
Sbjct: 93  VNSEDVFENEINKQVAIAIEEADVILFMVDV 123


>gi|256820197|ref|YP_003141476.1| GTP-binding protein EngA [Capnocytophaga ochracea DSM 7271]
 gi|256581780|gb|ACU92915.1| small GTP-binding protein [Capnocytophaga ochracea DSM 7271]
          Length = 434

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFEFNLVDTAGIRRK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E++D+ +L+
Sbjct: 236 AKVKEDLEFYSVMRSIRAIEHSDVCILM 263



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 22/173 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L K+  AIV  + G TRD      D  G    + DT G +   
Sbjct: 5   VAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVSFSVIDTGGYLAGG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS---------FPKNIDFIFIGT---- 327
           DD  EKE  K+  L ++ AD I+ +  +N ++ ++           K    I +      
Sbjct: 65  DDSFEKEINKQVALAIDEADAIIFM--VNVEEGLTGMDESVAELLRKCHKPILVAVNKVD 122

Query: 328 ----KSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               ++D++  Y   ++HL  +SS  G G  EL++ + ++L  K K+   ++P
Sbjct: 123 SNNRRNDMHEFYALGFEHLYALSSVNGSGTGELLDDLVALLPEKEKQEENTLP 175


>gi|253689379|ref|YP_003018569.1| small GTP-binding protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259645883|sp|C6DBH0|DER_PECCP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|251755957|gb|ACT14033.1| small GTP-binding protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 495

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE     ++ + +E AD++L +
Sbjct: 65  DGVETRMAGQSLVAIEEADIVLFM 88



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 268

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 269 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 304


>gi|122701421|emb|CAL88100.1| GTPase [Helicobacter pylori]
 gi|122701485|emb|CAL88132.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|242255834|gb|ACS88901.1| GTPase [Helicobacter pylori]
 gi|242255836|gb|ACS88902.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI++D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAIISDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|153939462|ref|YP_001391817.1| GTP-binding protein EngA [Clostridium botulinum F str. Langeland]
 gi|166224329|sp|A7GGA7|DER_CLOBL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|152935358|gb|ABS40856.1| ribosome-associated GTPase EngA [Clostridium botulinum F str.
           Langeland]
 gi|295319842|gb|ADG00220.1| ribosome-associated GTPase EngA [Clostridium botulinum F str.
           230613]
          Length = 439

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D PG TRD +  + +   Y   + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+  +  ++  + +E A++I+ L
Sbjct: 66  EDIIVSQMRRQAQIAIEMANVIIFL 90



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I  +G  N GKSSL N L  ++  IV+DIPGTTRD +   +D E     + DTAG+R   
Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTEFGEFTLIDTAGLRRKS 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   +E+  + RT+  +E AD+ +L+
Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILM 265


>gi|122702589|emb|CAL88484.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+      L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKTALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYV 92


>gi|320527698|ref|ZP_08028870.1| ribosome-associated GTPase EngA [Solobacterium moorei F0204]
 gi|320131941|gb|EFW24499.1| ribosome-associated GTPase EngA [Solobacterium moorei F0204]
          Length = 437

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G  I ++G  N GKSSL NA+ K+  +IV+++ GTTRD +      EG    I DTAGI
Sbjct: 173 TGIHIAVIGEPNVGKSSLVNAILKEKRSIVSNVQGTTRDAVDTPFVYEGKPYVIVDTAGI 232

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R+   +   VEK  + R    +E  D+ L +
Sbjct: 233 RKRGKVYESVEKYSVLRAMTAIERCDVALFV 263



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A   V+IV D PG TRD +    +  G   ++ DT GI+  D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGSRVSIVEDFPGVTRDRIYTTGEWTGKKFQLIDTGGIQLAD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
              ++E   +  + +  AD+IL +  +N K
Sbjct: 66  QPYQEEIRAQVQIAMNEADVILFV--VNGK 93


>gi|242255824|gb|ACS88896.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702635|emb|CAL88507.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT GI + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGIAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700591|emb|CAL87884.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|32267038|ref|NP_861070.1| GTP-binding protein EngA [Helicobacter hepaticus ATCC 51449]
 gi|41017015|sp|Q7VFY6|DER_HELHP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|32263090|gb|AAP78136.1| GTP-binding protein YphC [Helicobacter hepaticus ATCC 51449]
          Length = 487

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 29/177 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL NAL  K+ ++V+++ GTT D +  ++D+EG  V+  DTAGIR    I
Sbjct: 207 IIGRVNVGKSSLLNALLGKERSVVSEVAGTTIDPVDDEMDIEGKRVRFVDTAGIRRASKI 266

Query: 284 --VEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKN-IDFIFIGTKSDL-- 331
             +EK  + RT   +  + +++L+        E++ K     PK+ +  I +  K D   
Sbjct: 267 WGIEKFALLRTNAALAQSHIVILVLDASESFVELDEKISSLIPKHALGVIVVLNKWDKKH 326

Query: 332 --YSTYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
             Y    +E+ H            +S+  G  +++L  +I  +    +++  + IP+
Sbjct: 327 KEYKEIIKEFKHRFPFLSFAPVMTLSALNGRNIDKLKKEILKV----YQRFAYRIPT 379



 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L K+ +AI +D+ GTTRDV     D+ G  V++ DT GI + +
Sbjct: 4   IAILGKPNVGKSSLFNRLIKQHLAITSDVSGTTRDVKRACFDISGVEVELLDTGGIDKAE 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
            +  K     +    + ADL+L + + N
Sbjct: 64  GLFAKVS-ANSLKAGQEADLVLYMVDGN 90


>gi|301123827|ref|XP_002909640.1| ras family GTPase, putative [Phytophthora infestans T30-4]
 gi|262100402|gb|EEY58454.1| ras family GTPase, putative [Phytophthora infestans T30-4]
          Length = 503

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G +N GKS+LFN L K   AIV ++PGTTRD       L G  + + DT G+ + 
Sbjct: 43  RIALVGRTNVGKSTLFNRLTKTRSAIVHNVPGTTRDRRYKRATLAGLELDVVDTGGLEDA 102

Query: 281 DDIVEKEG-IKRTFLEVENADLILLL 305
                +EG +++T L V  ADL+  L
Sbjct: 103 PSGTLEEGMLEQTRLAVHEADLVFFL 128



 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 45/173 (26%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISDTAGI- 277
           K+ I+G  N GKS+L N + + D  +     +P T            G  +K+ DTAGI 
Sbjct: 209 KLAIVGRPNVGKSTLLNKIVRNDRVLTGPEYVPWT----------FHGRSIKLVDTAGIR 258

Query: 278 ----RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI---------DFIF 324
               R+ DD +E   ++ +F  +++A +++++ +++  K I     I           + 
Sbjct: 259 RYGKRDHDDQIENLSVRDSFRAIDSAQVVVVVVDMSEPKLIHMDLTIAQRVIEEGRALVL 318

Query: 325 IGTKSDLYST---------YTEEYDHL----------ISSFTGEGLEELINKI 358
              KSDL              E  D L          IS+ TG G+++L+ ++
Sbjct: 319 AANKSDLAGASVDLEMQRIQNELQDSLAQVRGVPVVPISALTGNGIKKLVPEV 371


>gi|62289366|ref|YP_221159.1| GTP-binding protein EngA [Brucella abortus bv. 1 str. 9-941]
 gi|82699291|ref|YP_413865.1| GTP-binding protein EngA [Brucella melitensis biovar Abortus 2308]
 gi|189023620|ref|YP_001934388.1| GTP-binding protein EngA [Brucella abortus S19]
 gi|237814855|ref|ZP_04593853.1| small GTP-binding protein [Brucella abortus str. 2308 A]
 gi|254688683|ref|ZP_05151937.1| GTP-binding protein EngA [Brucella abortus bv. 6 str. 870]
 gi|254696810|ref|ZP_05158638.1| GTP-binding protein EngA [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729717|ref|ZP_05188295.1| GTP-binding protein EngA [Brucella abortus bv. 4 str. 292]
 gi|256256930|ref|ZP_05462466.1| GTP-binding protein EngA [Brucella abortus bv. 9 str. C68]
 gi|260545880|ref|ZP_05821621.1| GTP-binding protein engA [Brucella abortus NCTC 8038]
 gi|260754159|ref|ZP_05866507.1| GTP-binding protein engA [Brucella abortus bv. 6 str. 870]
 gi|260757379|ref|ZP_05869727.1| GTP-binding protein engA [Brucella abortus bv. 4 str. 292]
 gi|260761203|ref|ZP_05873546.1| GTP-binding protein engA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883184|ref|ZP_05894798.1| GTP-binding protein engA [Brucella abortus bv. 9 str. C68]
 gi|297247781|ref|ZP_06931499.1| ribosome-associated GTPase EngA [Brucella abortus bv. 5 str. B3196]
 gi|75505338|sp|Q57EY6|DER_BRUAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123546332|sp|Q2YM98|DER_BRUA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238691492|sp|B2S9M3|DER_BRUA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|62195498|gb|AAX73798.1| GTP-binding protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615392|emb|CAJ10361.1| Uridine kinase:ATP/GTP-binding site motif A (P-loop):Ras GTPase
           superfamily:GTP-binding protein, HSR1-related:Small
           GTP-bindi [Brucella melitensis biovar Abortus 2308]
 gi|189019192|gb|ACD71914.1| GTP-binding protein EngA [Brucella abortus S19]
 gi|237789692|gb|EEP63902.1| small GTP-binding protein [Brucella abortus str. 2308 A]
 gi|260097287|gb|EEW81162.1| GTP-binding protein engA [Brucella abortus NCTC 8038]
 gi|260667697|gb|EEX54637.1| GTP-binding protein engA [Brucella abortus bv. 4 str. 292]
 gi|260671635|gb|EEX58456.1| GTP-binding protein engA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674267|gb|EEX61088.1| GTP-binding protein engA [Brucella abortus bv. 6 str. 870]
 gi|260872712|gb|EEX79781.1| GTP-binding protein engA [Brucella abortus bv. 9 str. C68]
 gi|297174950|gb|EFH34297.1| ribosome-associated GTPase EngA [Brucella abortus bv. 5 str. B3196]
          Length = 483

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 24/165 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326
           E  +D +E     +T   +  AD +L +  I++K  I+ P +  F           + + 
Sbjct: 62  EAANDSLEARMRAQTEAAISEADAVLFV--IDAKAGIT-PADSTFAEAVRRSGKPVVLVA 118

Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
            K++   +    YD           IS+  G+G+ +L + I  +L
Sbjct: 119 NKAEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL 163



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N +  +D  +     G TRD ++ D +  G  + + DTAG+R  
Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKINLFDTAGMRRK 272

Query: 281 DDIVEK 286
             + EK
Sbjct: 273 ARVQEK 278


>gi|315225621|ref|ZP_07867430.1| ribosome-associated GTPase EngA [Capnocytophaga ochracea F0287]
 gi|314944438|gb|EFS96478.1| ribosome-associated GTPase EngA [Capnocytophaga ochracea F0287]
          Length = 434

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFEFNLVDTAGIRRK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E++D+ +L+
Sbjct: 236 AKVKEDLEFYSVMRSIRAIEHSDVCILM 263



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 22/173 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L K+  AIV  + G TRD      D  G    + DT G +   
Sbjct: 5   VAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVSFSVIDTGGYLAGG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKN-IDFI 323
           DD  EKE  K+  L ++ AD I+ +  +                  +K I    N +D  
Sbjct: 65  DDSFEKEINKQVALAIDEADAIIFMVNVEEGLTGMDESVAELLRKCRKPILVAVNKVD-- 122

Query: 324 FIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               ++D++  Y   ++HL  +SS  G G  EL++ + ++L  K ++   ++P
Sbjct: 123 SNNRRNDMHEFYALGFEHLYALSSVNGSGTGELLDDLVALLPVKEQQEEDTLP 175


>gi|312962901|ref|ZP_07777388.1| GTP-binding protein EngA [Pseudomonas fluorescens WH6]
 gi|311282928|gb|EFQ61522.1| GTP-binding protein EngA [Pseudomonas fluorescens WH6]
          Length = 489

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 31/183 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 192 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNDEKYTLIDTAG 251

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309
           +R+   I   VEK  + +T   +++A++++ + +                          
Sbjct: 252 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 311

Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
            +K +   P   DF+ I  +  L+  + E  D H IS+  G G+  L   +++   +   
Sbjct: 312 INKWDGMTPSERDFVKIELQRRLF--FVEFADIHFISALHGTGVGNLYASVQNSFKSAVT 369

Query: 368 KLP 370
           + P
Sbjct: 370 RWP 372



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   AIV D+ G TRD    +   +G    I DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYIIVDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD++L L
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFL 88


>gi|261340815|ref|ZP_05968673.1| ribosome-associated GTPase EngA [Enterobacter cancerogenus ATCC
           35316]
 gi|288317241|gb|EFC56179.1| ribosome-associated GTPase EngA [Enterobacter cancerogenus ATCC
           35316]
          Length = 491

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 205 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREFVLIDTAGVRKR 264

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D+VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 265 GKITDVVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 300



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|122702445|emb|CAL88413.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V+I DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEILDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701375|emb|CAL88077.1| GTPase [Helicobacter pylori]
 gi|122701413|emb|CAL88096.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|17987833|ref|NP_540467.1| GTP-binding protein EngA [Brucella melitensis bv. 1 str. 16M]
 gi|225851918|ref|YP_002732151.1| GTP-binding protein EngA [Brucella melitensis ATCC 23457]
 gi|256044100|ref|ZP_05447011.1| GTP-binding protein EngA [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112898|ref|ZP_05453814.1| GTP-binding protein EngA [Brucella melitensis bv. 3 str. Ether]
 gi|256264570|ref|ZP_05467102.1| GTP-binding protein engA [Brucella melitensis bv. 2 str. 63/9]
 gi|260563458|ref|ZP_05833944.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. 16M]
 gi|265990512|ref|ZP_06103069.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994340|ref|ZP_06106897.1| GTP-binding protein engA [Brucella melitensis bv. 3 str. Ether]
 gi|26006723|sp|Q8YFH2|DER_BRUME RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783140|sp|C0RH89|DER_BRUMB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|17983561|gb|AAL52731.1| gtp-binding protein [Brucella melitensis bv. 1 str. 16M]
 gi|225640283|gb|ACO00197.1| small GTP-binding protein [Brucella melitensis ATCC 23457]
 gi|260153474|gb|EEW88566.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. 16M]
 gi|262765453|gb|EEZ11242.1| GTP-binding protein engA [Brucella melitensis bv. 3 str. Ether]
 gi|263001296|gb|EEZ13871.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094935|gb|EEZ18643.1| GTP-binding protein engA [Brucella melitensis bv. 2 str. 63/9]
 gi|326408416|gb|ADZ65481.1| GTP-binding protein EngA [Brucella melitensis M28]
 gi|326538130|gb|ADZ86345.1| small GTP-binding protein [Brucella melitensis M5-90]
          Length = 483

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 24/165 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326
           E  +D +E     +T   +  AD +L +  I++K  I+ P +  F           + + 
Sbjct: 62  EAANDSLEARMRAQTEAAISEADAVLFV--IDAKAGIT-PADSTFAEAVRRSGKPVVLVA 118

Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
            K++   +    YD           IS+  G+G+ +L + I  +L
Sbjct: 119 NKAEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL 163



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N +  +D  +     G TRD ++ D +  G  +K+ DTAG+R  
Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRK 272

Query: 281 DDIVEK 286
             + EK
Sbjct: 273 ARVQEK 278


>gi|23501279|ref|NP_697406.1| GTP-binding protein EngA [Brucella suis 1330]
 gi|161618354|ref|YP_001592241.1| GTP-binding protein EngA [Brucella canis ATCC 23365]
 gi|225626893|ref|ZP_03784932.1| small GTP-binding protein [Brucella ceti str. Cudo]
 gi|254703735|ref|ZP_05165563.1| GTP-binding protein EngA [Brucella suis bv. 3 str. 686]
 gi|254707885|ref|ZP_05169713.1| GTP-binding protein EngA [Brucella pinnipedialis M163/99/10]
 gi|254709531|ref|ZP_05171342.1| GTP-binding protein EngA [Brucella pinnipedialis B2/94]
 gi|254713052|ref|ZP_05174863.1| GTP-binding protein EngA [Brucella ceti M644/93/1]
 gi|254716595|ref|ZP_05178406.1| GTP-binding protein EngA [Brucella ceti M13/05/1]
 gi|254718562|ref|ZP_05180373.1| GTP-binding protein EngA [Brucella sp. 83/13]
 gi|256031025|ref|ZP_05444639.1| GTP-binding protein EngA [Brucella pinnipedialis M292/94/1]
 gi|256060517|ref|ZP_05450686.1| GTP-binding protein EngA [Brucella neotomae 5K33]
 gi|256159079|ref|ZP_05456908.1| GTP-binding protein EngA [Brucella ceti M490/95/1]
 gi|256254428|ref|ZP_05459964.1| GTP-binding protein EngA [Brucella ceti B1/94]
 gi|256368832|ref|YP_003106338.1| GTP-binding protein EngA [Brucella microti CCM 4915]
 gi|260168157|ref|ZP_05754968.1| GTP-binding protein EngA [Brucella sp. F5/99]
 gi|260567011|ref|ZP_05837481.1| GTP-binding protein engA [Brucella suis bv. 4 str. 40]
 gi|261218394|ref|ZP_05932675.1| GTP-binding protein engA [Brucella ceti M13/05/1]
 gi|261221596|ref|ZP_05935877.1| GTP-binding protein engA [Brucella ceti B1/94]
 gi|261315376|ref|ZP_05954573.1| GTP-binding protein engA [Brucella pinnipedialis M163/99/10]
 gi|261317057|ref|ZP_05956254.1| GTP-binding protein engA [Brucella pinnipedialis B2/94]
 gi|261320757|ref|ZP_05959954.1| GTP-binding protein engA [Brucella ceti M644/93/1]
 gi|261324511|ref|ZP_05963708.1| GTP-binding protein engA [Brucella neotomae 5K33]
 gi|261754380|ref|ZP_05998089.1| GTP-binding protein engA [Brucella suis bv. 3 str. 686]
 gi|261757615|ref|ZP_06001324.1| GTP-binding protein engA [Brucella sp. F5/99]
 gi|265983537|ref|ZP_06096272.1| GTP-binding protein engA [Brucella sp. 83/13]
 gi|265988095|ref|ZP_06100652.1| GTP-binding protein engA [Brucella pinnipedialis M292/94/1]
 gi|265997559|ref|ZP_06110116.1| GTP-binding protein engA [Brucella ceti M490/95/1]
 gi|294851760|ref|ZP_06792433.1| ribosome-associated GTPase EngA [Brucella sp. NVSL 07-0026]
 gi|306837298|ref|ZP_07470181.1| small GTP-binding protein [Brucella sp. NF 2653]
 gi|306845011|ref|ZP_07477592.1| small GTP-binding protein [Brucella sp. BO1]
 gi|37999701|sp|Q8G2E8|DER_BRUSU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037138|sp|A9M8F4|DER_BRUC2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|23347166|gb|AAN29321.1| GTP-binding protein [Brucella suis 1330]
 gi|161335165|gb|ABX61470.1| small GTP-binding protein domain [Brucella canis ATCC 23365]
 gi|225618550|gb|EEH15593.1| small GTP-binding protein [Brucella ceti str. Cudo]
 gi|255998990|gb|ACU47389.1| GTP-binding protein EngA [Brucella microti CCM 4915]
 gi|260156529|gb|EEW91609.1| GTP-binding protein engA [Brucella suis bv. 4 str. 40]
 gi|260920180|gb|EEX86833.1| GTP-binding protein engA [Brucella ceti B1/94]
 gi|260923483|gb|EEX90051.1| GTP-binding protein engA [Brucella ceti M13/05/1]
 gi|261293447|gb|EEX96943.1| GTP-binding protein engA [Brucella ceti M644/93/1]
 gi|261296280|gb|EEX99776.1| GTP-binding protein engA [Brucella pinnipedialis B2/94]
 gi|261300491|gb|EEY03988.1| GTP-binding protein engA [Brucella neotomae 5K33]
 gi|261304402|gb|EEY07899.1| GTP-binding protein engA [Brucella pinnipedialis M163/99/10]
 gi|261737599|gb|EEY25595.1| GTP-binding protein engA [Brucella sp. F5/99]
 gi|261744133|gb|EEY32059.1| GTP-binding protein engA [Brucella suis bv. 3 str. 686]
 gi|262552027|gb|EEZ08017.1| GTP-binding protein engA [Brucella ceti M490/95/1]
 gi|264660292|gb|EEZ30553.1| GTP-binding protein engA [Brucella pinnipedialis M292/94/1]
 gi|264662129|gb|EEZ32390.1| GTP-binding protein engA [Brucella sp. 83/13]
 gi|294820349|gb|EFG37348.1| ribosome-associated GTPase EngA [Brucella sp. NVSL 07-0026]
 gi|306274643|gb|EFM56432.1| small GTP-binding protein [Brucella sp. BO1]
 gi|306407611|gb|EFM63807.1| small GTP-binding protein [Brucella sp. NF 2653]
          Length = 483

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 24/165 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326
           E  +D +E     +T   +  AD +L +  I++K  I+ P +  F           + + 
Sbjct: 62  EAANDSLEARMRAQTEAAISEADAVLFV--IDAKAGIT-PADSTFAEAVRRSGKPVVLVA 118

Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
            K++   +    YD           IS+  G+G+ +L + I  +L
Sbjct: 119 NKAEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL 163



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N +  +D  +     G TRD ++ D +  G  +K+ DTAG+R  
Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRK 272

Query: 281 DDIVEK 286
             + EK
Sbjct: 273 ARVQEK 278


>gi|303257594|ref|ZP_07343606.1| ribosome-associated GTPase EngA [Burkholderiales bacterium 1_1_47]
 gi|330999635|ref|ZP_08323344.1| ribosome biogenesis GTPase Der [Parasutterella excrementihominis
           YIT 11859]
 gi|302859564|gb|EFL82643.1| ribosome-associated GTPase EngA [Burkholderiales bacterium 1_1_47]
 gi|329574141|gb|EGG55717.1| ribosome biogenesis GTPase Der [Parasutterella excrementihominis
           YIT 11859]
          Length = 443

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I G  NAGKS+L NAL  +D  I  D+PGTTRD + ++   +     + DTAG+R  
Sbjct: 179 KVAIAGRPNAGKSTLINALIGEDRLIAFDMPGTTRDAIEVEFQYKDRDYTLIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +E++++++LL
Sbjct: 239 GKVFEAIEKFSVIKTLQAIESSNVVVLL 266



 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           I ++G  N GKS+LFN L +   A+V D PG TRD    D  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRHYGDGRIGDKPYLVIDTGGFEPIR 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           T+ IV KE   +  L +  +D++L L
Sbjct: 65  TEGIV-KEMTGQAQLAITESDVVLFL 89


>gi|256383817|gb|ACU78387.1| ribosome-associated GTPase EngA [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256384647|gb|ACU79216.1| ribosome-associated GTPase EngA [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455372|gb|ADH21607.1| ribosome-associated GTPase EngA [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 435

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 8/121 (6%)

Query: 199 LKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           L + + S+IS+ +  EII++   KI I+G  N GKSSL N+L  ++  IV++I GTT D 
Sbjct: 155 LLDKVISYISKNE--EIIKDDSTKIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           + I          + DTAGIR+   +   +EK    R+   + NAD++LL+  I++ K I
Sbjct: 213 VDISFSYNKKKYTVIDTAGIRKKSKLGQTIEKYSYLRSLSAISNADIVLLM--IDATKPI 270

Query: 315 S 315
           +
Sbjct: 271 T 271



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN + K+  +IV + PG TRD +    +       + DT GI  +D
Sbjct: 6   VAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSSAEWLTREFILIDTGGISLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            +   E   +T + +E AD+I+ +
Sbjct: 66  QLFSNEIKLQTQIAIEQADVIIFV 89


>gi|213961763|ref|ZP_03390029.1| ribosome-associated GTPase EngA [Capnocytophaga sputigena Capno]
 gi|213955552|gb|EEB66868.1| ribosome-associated GTPase EngA [Capnocytophaga sputigena Capno]
          Length = 434

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFEFNLVDTAGIRRK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E++D+ +L+
Sbjct: 236 AKVKEDLEFYSVMRSIRAIEHSDVCILM 263



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 22/164 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + ++G  N GKS+ FN L K+  AIV  + G TRD      D  G    + DT G +   
Sbjct: 5   VAVVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVSFSVIDTGGYLAGG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS---------FPKNIDFIFIGT---- 327
           DD  EKE  K+  L ++ AD I+ +  +N ++ ++           K    I +      
Sbjct: 65  DDSFEKEINKQVALAIDEADAIIFM--VNVEEGLTGMDEAVSEMLRKCHKPILVAVNKVD 122

Query: 328 ----KSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNK 365
               ++D++  Y   ++HL  +SS  G G  EL++ + ++L  K
Sbjct: 123 SNNRRNDMHEFYALGFEHLYALSSVNGSGTGELLDDLVALLPVK 166


>gi|302670901|ref|YP_003830861.1| GTP-binding protein [Butyrivibrio proteoclasticus B316]
 gi|302395374|gb|ADL34279.1| GTP-binding protein [Butyrivibrio proteoclasticus B316]
          Length = 442

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 6/120 (5%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           +K+ + D+L    ++ SH S+    E   +  KI I+G  N GKSS+ N L  ++  IV+
Sbjct: 151 NKQGIGDLL---EEVVSHFSKSSTDEEEDDSVKIAIIGKPNVGKSSIINKLIGENRLIVS 207

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           DI GTTRD +   +   G      DTAG+R  + I   +E   I RT   VE AD+ +L+
Sbjct: 208 DIAGTTRDAIDTPVKYNGKKYTFIDTAGLRRKNKIKDELEHYMIVRTVGAVERADVAILV 267



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFNALA   +AIV D PG TRD +  D++   +   + DT GI  ++
Sbjct: 7   VAVVGRPNVGKSTLFNALAGSRIAIVQDTPGVTRDRIYQDVEWLNHSFTLIDTGGIEPDS 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+  +   +  + ++ AD+I+ + ++
Sbjct: 67  KDIILAQMRDQAQIAIDTADVIIFMVDV 94


>gi|124025156|ref|YP_001014272.1| GTP-binding protein EngA [Prochlorococcus marinus str. NATL1A]
 gi|166225837|sp|A2C0J7|DER_PROM1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123960224|gb|ABM75007.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str.
           NATL1A]
          Length = 456

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 3/97 (3%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L E+  +  ++ I+G  N GKSSL N++  +  AIV+ I GTTRD +   +  +G   K+
Sbjct: 170 LDEVSDSPVQLAIIGRPNVGKSSLLNSICGETRAIVSSIRGTTRDTIDTRITHQGKEWKL 229

Query: 272 SDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
            DTAGIR    +    E  GI R+F  +E +D+ +L+
Sbjct: 230 VDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLV 266



 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCQSREAIVHDEPGVTRDRTYQDGFWRDRDFKVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|319936463|ref|ZP_08010879.1| GTP-binding protein engA [Coprobacillus sp. 29_1]
 gi|319808578|gb|EFW05130.1| GTP-binding protein engA [Coprobacillus sp. 29_1]
          Length = 435

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL NAL  ++  IV+DI GTTRD +    + +G   ++ DTAG+R+   +
Sbjct: 179 IIGRPNVGKSSLTNALLGEERVIVSDIEGTTRDAIDTAFEKDGQKYRVIDTAGMRKKGKV 238

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
              +EK  I R    VE +D++L++
Sbjct: 239 YENIEKYSILRALSAVEKSDVVLVV 263



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 4/95 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G +N GKS++FN +  + V+IV DIPG TRD +  +        ++ DT GI E +
Sbjct: 6   VAIVGRANVGKSTIFNRIVGERVSIVEDIPGVTRDRIYANASWLTRDFRLIDTGGI-ELE 64

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSKKEIS 315
           D    E IK +  + +E AD+IL +  +N ++ I+
Sbjct: 65  DASFTEQIKMQAEIAIEEADVILFV--VNGREGIT 97


>gi|167772322|ref|ZP_02444375.1| hypothetical protein ANACOL_03699 [Anaerotruncus colihominis DSM
           17241]
 gi|167665425|gb|EDS09555.1| hypothetical protein ANACOL_03699 [Anaerotruncus colihominis DSM
           17241]
          Length = 442

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           I I+G  N GKS+LFN LA   ++IV D PG TRD +  + +     V + DT GI    
Sbjct: 6   IAIVGRPNVGKSTLFNKLAGARISIVEDTPGVTRDRVYYECEWRAKTVMLVDTGGIEPYS 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           TD I+ +   ++  L +++AD+I+L+ +I S
Sbjct: 66  TDKILSQMR-RQAQLAIDSADVIILVTDIQS 95



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 61/105 (58%), Gaps = 5/105 (4%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           +HI   +  E      K+ ++G  N GKSSL N +A ++ +IV+D+ GTTRD +   ++ 
Sbjct: 163 AHIDFNRADEYGEEYVKVAVIGKPNVGKSSLVNRVAGEERSIVSDMAGTTRDAVDTVVEN 222

Query: 265 E-GYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           E G  V I DTAGIR    +   +E+  + R ++ V+ +D+ +++
Sbjct: 223 EYGRFVFI-DTAGIRRKSRVEEQIERYSVLRAYMAVDRSDVCVIM 266


>gi|45658262|ref|YP_002348.1| GTP-binding protein EngA [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|73919333|sp|Q72PQ1|DER_LEPIC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|45601504|gb|AAS70985.1| GTP-binding protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 489

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           +++ I+G  N+GKSSL NA+   + A+V+D+ GTTRD +   L+     + ++DTAGIR 
Sbjct: 227 FRLAIVGKPNSGKSSLLNAICGYERAVVSDVAGTTRDSIDTLLEFGDRRLLLTDTAGIRK 286

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLL 305
             +T + +E    +RT   +E++DL++ L
Sbjct: 287 QSKTAEALEFYSYQRTIKAIESSDLVIHL 315



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 17/98 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGYLVKISDTAG 276
           + I+G  N GKS+LFN+L KK +AI  D PG TRDVL+  +     DL+ YL    DT G
Sbjct: 32  VSIVGRQNVGKSTLFNSLLKKKLAITEDYPGVTRDVLSARIYQEEKDLDFYLC---DTPG 88

Query: 277 IRETDDIVEKEGIKRTFLE-----VENADLILLLKEIN 309
           +    DI   + + +T LE     +  +D+I+ L + N
Sbjct: 89  L----DIENPDSLSQTILETAYGQLRESDVIVFLLDKN 122


>gi|34498989|ref|NP_903204.1| GTP-binding protein EngA [Chromobacterium violaceum ATCC 12472]
 gi|41017007|sp|Q7NS92|DER_CHRVO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|34104839|gb|AAQ61196.1| probable GTP-binding protein [Chromobacterium violaceum ATCC 12472]
          Length = 469

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K  ++G  N GKS+L NA+  ++  I  D  GTTRD + ID + EG+   I DTAG+R  
Sbjct: 176 KFAVIGRPNVGKSTLVNAILGEERVIAFDQAGTTRDSIYIDFEREGHTYTIIDTAGVRRR 235

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + ++++EK  + +T   +E+A++ +L+
Sbjct: 236 AKVNEMLEKFSVIKTMKAIEDANVAVLV 263



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 13/91 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           + ++G  N GKS+LFN L +   A+V D PG TRD       +  + YLV   DT G   
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRHYGQGRVGEKPYLV--VDTGGFEP 62

Query: 280 TDDIVEKEGI-----KRTFLEVENADLILLL 305
             D    EGI     K+T   V+ AD ++ L
Sbjct: 63  VVD----EGILFEMAKQTLQAVDEADAVVFL 89


>gi|24214003|ref|NP_711484.1| GTP-binding protein EngA [Leptospira interrogans serovar Lai str.
           56601]
 gi|73919334|sp|Q8F6K1|DER_LEPIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|24194868|gb|AAN48502.1| GTP-binding protein EngA [Leptospira interrogans serovar Lai str.
           56601]
          Length = 489

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           +++ I+G  N+GKSSL NA+   + A+V+D+ GTTRD +   L+     + ++DTAGIR 
Sbjct: 227 FRLAIVGKPNSGKSSLLNAICGYERAVVSDVAGTTRDSIDTLLEFGDRRLLLTDTAGIRK 286

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLL 305
             +T + +E    +RT   +E++DL++ L
Sbjct: 287 QSKTAEALEFYSYQRTIKAIESSDLVIHL 315



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 9/94 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGYLVKISDTAG 276
           + I+G  N GKS+LFN+L KK +AI  D PG TRDVL+  +     DL+ YL    DT G
Sbjct: 32  VSIVGRQNVGKSTLFNSLLKKKLAITEDYPGVTRDVLSARIYQEEKDLDFYLC---DTPG 88

Query: 277 IR-ETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  E  D + +  ++  + ++  +D+I+ L + N
Sbjct: 89  LDIENPDSLSQTILETAYRQLRESDVIVFLLDKN 122


>gi|325661996|ref|ZP_08150615.1| GTP-binding protein engA [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331085846|ref|ZP_08334929.1| GTP-binding protein engA [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325471659|gb|EGC74878.1| GTP-binding protein engA [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330406769|gb|EGG86274.1| GTP-binding protein engA [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 442

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 6/121 (4%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           SS+  L D+L   + +++H  +    E      +I I+G  N GKSS+ N L  ++  IV
Sbjct: 149 SSRLGLGDML---DAVAAHFPEHSAEEEEDERPRIAIVGKPNVGKSSIINKLVGENRVIV 205

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILL 304
           ++I GTTRD +  ++   G      DTAG+R  + I   +E+  I RT   VE AD++L+
Sbjct: 206 SNIAGTTRDAIDTEITWNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLV 265

Query: 305 L 305
           +
Sbjct: 266 V 266



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIR 278
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  +   LD E  L+   DT GI 
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYAEVTWLDREFTLI---DTGGIE 62

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            ++ DI+  +  ++  + ++ AD+I+ + ++  
Sbjct: 63  PDSKDIILAQMREQAQIAIDTADVIIFITDVRQ 95


>gi|315646409|ref|ZP_07899527.1| GTP-binding protein EngA [Paenibacillus vortex V453]
 gi|315278052|gb|EFU41372.1| GTP-binding protein EngA [Paenibacillus vortex V453]
          Length = 440

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 8/102 (7%)

Query: 212 LGEIIRNGY-----KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           L E+  +GY     ++ ++G  N GKSSL NA+  ++  IV+D+ GTTRD +    + +G
Sbjct: 164 LPELEDDGYDEDVIRVALIGRPNVGKSSLVNAILGEERVIVSDVAGTTRDAIDTPFEKDG 223

Query: 267 YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
               + DTAG+R+   +    EK  + R    +E AD++L+L
Sbjct: 224 QRYVLIDTAGMRKRGKVYETTEKYSVMRAMRAIERADVVLVL 265



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS++FN L    +AIV D PG TRD +    +  G    + DT GI  + 
Sbjct: 6   VAIVGRPNVGKSTIFNRLIGDRLAIVEDKPGITRDRIYGSAEWNGKAFSVIDTGGIEIDG 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DD++ K    +  L +E AD+I+ +
Sbjct: 66  DDMILKSIRMQAELAIEEADVIVFM 90


>gi|222823547|ref|YP_002575121.1| predicted GTP-binding protein [Campylobacter lari RM2100]
 gi|254783143|sp|B9KFN5|DER_CAMLR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|222538769|gb|ACM63870.1| conserved hypothetical protein, predicted GTP-binding protein
           [Campylobacter lari RM2100]
          Length = 461

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 2/97 (2%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           KL  I  N  K+ I+G  N GKSSL NAL K++ ++V+DI GTT D +   +  +  +++
Sbjct: 188 KLKTINENHIKVGIIGRVNVGKSSLLNALVKEERSVVSDIAGTTIDPVNESIMHKDKIIE 247

Query: 271 ISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLL 305
             DTAGIR+   I  +E+  + RT   + NA + LL+
Sbjct: 248 FVDTAGIRKRGKIQGLERYALNRTEYALTNAQIALLV 284



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN LA+K +AI +DI GTTRD   I++ ++G    + D+ G+ E++
Sbjct: 4   IILIGKPNVGKSSLFNRLARKRIAITSDISGTTRDTNKIEVQIDGKKALLIDSGGLDESN 63

Query: 282 DIVEKEGIKRTFLE-VENADLILLL 305
           ++   + +K   L+  +N+D+I  +
Sbjct: 64  ELF--KNVKANSLKAAKNSDIIFYM 86


>gi|300871553|ref|YP_003786426.1| GTP-binding protein EngA [Brachyspira pilosicoli 95/1000]
 gi|300689254|gb|ADK31925.1| GTP-binding protein, EngA [Brachyspira pilosicoli 95/1000]
          Length = 489

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKS+L N L  KD +IV++I GTTRD +    + +G  + + DTAGIR+  
Sbjct: 228 IAIVGKPNAGKSTLLNTLIGKDRSIVSNIAGTTRDSIDETFNFKGDDICLVDTAGIRKKK 287

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEI 308
           ++   VE   + R    +E +D+ +L+ ++
Sbjct: 288 NVNTDVEYYSVNRAIKAIEASDVCILMLDV 317



 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 8/140 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKS+LFN  A +  +IV    G TRD+      ++     + DT G+ +  
Sbjct: 4   IAILGRPNVGKSTLFNRFAGRRKSIVDPTAGVTRDISIAKTYIDDIAFNVFDTGGLLDMS 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD------LYSTY 335
           + V  E ++   L+    +  LLL  +++ +  + P +  FI    K +      +    
Sbjct: 64  EDVLNEKVREKALKTATDEAHLLLFVVDAHQ--THPDDRHFINTIRKLNKPIILVINKID 121

Query: 336 TEEYDHLISSFTGEGLEELI 355
           ++ +++LI+ F   G+++++
Sbjct: 122 SDSHNNLINEFYSLGIKDIV 141


>gi|300854433|ref|YP_003779417.1| putative GTP-binding protein [Clostridium ljungdahlii DSM 13528]
 gi|300434548|gb|ADK14315.1| putative GTP-binding protein [Clostridium ljungdahlii DSM 13528]
          Length = 438

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+  +G  N GKSSL N L  ++  IV+DIPGTTRD +   L+ +   + + DTAG+R+ 
Sbjct: 178 KVAFIGKPNVGKSSLINKLLGEERVIVSDIPGTTRDAVDSYLETDYGKLLLIDTAGLRKK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E+  + RT+  +E AD+ +L+
Sbjct: 238 SKVKEEIERYSVIRTYTAIERADVCVLI 265



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K ++IV D PG TRD +  + +   Y   I DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRISIVEDTPGVTRDRVYAEAEWLKYNFTIIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D++  +  ++  + VE AD I+ +
Sbjct: 66  TDVIISQMRRQAQVAVETADTIIFI 90


>gi|299115668|emb|CBN75868.1| MEngA, mitochondrial EngA GTPase [Ectocarpus siliculosus]
          Length = 629

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 14/133 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           ++ ++G  N GKSSL NA+ ++D A+    PG TRD + ++    G  V++ DTAGI   
Sbjct: 323 QLALVGRPNVGKSSLLNAVLREDRALTGPTPGLTRDAVAVEWTWGGKAVRLVDTAGIRKS 382

Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLL----KEINSKKEISFPKNI-----DFIFIG 326
             R+T   +E+  +K +   +  A +++L+    + +  K E+S    +       +   
Sbjct: 383 GSRDTTTPLEELAVKDSMNAIHKAQVVVLVLDGSEGMLRKTELSIASMVATEGRALVVAA 442

Query: 327 TKSDLYSTYTEEY 339
            KSDL      EY
Sbjct: 443 NKSDLSGVSPGEY 455



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 13/112 (11%)

Query: 207 ISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           + +  L    R G +++VI+G  N GKS+L+N LA ++ AIVT I GTTRD     + L 
Sbjct: 100 VKRPPLSAPARGGAFRVVIVGRPNVGKSTLYNRLATRNRAIVTPIAGTTRDRKESTVSLG 159

Query: 266 GYLVKISDTAGIRETDDIVEKEG------------IKRTFLEVENADLILLL 305
           G     +DT G+ +  D   K              +K+T   +E++D++L +
Sbjct: 160 GMTFDFADTGGLEDGADEPWKGPPGTPHPGMPQVVLKKTEEAIEDSDIVLFM 211


>gi|257457196|ref|ZP_05622372.1| ribosome-associated GTPase EngA [Treponema vincentii ATCC 35580]
 gi|257445455|gb|EEV20522.1| ribosome-associated GTPase EngA [Treponema vincentii ATCC 35580]
          Length = 506

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS+L N L K   +IV+DI GTTRDV+  +   +G    I DTAGIR  
Sbjct: 239 RIALIGKPNTGKSTLSNYLTKTSASIVSDIAGTTRDVVEGEFFYKGRQFIIQDTAGIRRK 298

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    +ENAD++  L
Sbjct: 299 TKVKEDIEYYSVVRAMKSLENADIVFHL 326



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           +VI G  N GKS+LFN   +K  AI    PG TRD +     + G  V++ DT G + T 
Sbjct: 62  VVIAGRPNVGKSTLFNRFLRKRRAITDPTPGVTRDPIEAQAIINGLPVRLMDTGGFKLTR 121

Query: 281 -----DDIVEKEGIKRTFLEVENADLILLLKEINS 310
                DD++++  +++T   +  AD ILLL E ++
Sbjct: 122 SGDKNDDMMDELVVEKTQDALRRADKILLLLEASA 156


>gi|254693167|ref|ZP_05154995.1| GTP-binding protein EngA [Brucella abortus bv. 3 str. Tulya]
 gi|261213405|ref|ZP_05927686.1| GTP-binding protein engA [Brucella abortus bv. 3 str. Tulya]
 gi|260915012|gb|EEX81873.1| GTP-binding protein engA [Brucella abortus bv. 3 str. Tulya]
          Length = 483

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 24/165 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326
           E  +D +E     +T   +  AD +L +  I++K  I+ P +  F           + + 
Sbjct: 62  EAANDSLEARMRAQTEAAISEADAVLFV--IDAKAGIT-PADSTFAEAVRRSGKPVVLVA 118

Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
            K++   +    YD           IS+  G+G+ +L + I  +L
Sbjct: 119 NKAEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL 163



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N +  +D  +     G TRD ++ D +  G  + + DTAG+R  
Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKINLFDTAGMRRK 272

Query: 281 DDIVEK 286
             + EK
Sbjct: 273 ARVQEK 278


>gi|161485612|ref|YP_386558.2| GTP-binding protein EngA [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 455

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ +LG  NAGKSSL NAL+     IV+D+ GTTRD + I ++L G      DTAG+R  
Sbjct: 190 KLAMLGRPNAGKSSLVNALSGSRRMIVSDVAGTTRDSVDIAVELGGRRYVFVDTAGVRRR 249

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +  D VE+  +  +      AD+ L++
Sbjct: 250 AKIQDPVERYSVNSSLKSTTKADVTLVV 277



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 7/53 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           KI ++G  N GKS+LFN L + + AI  D PG TRD       +EGY VK+ D
Sbjct: 4   KIALIGRPNVGKSTLFNRLIRSNRAITHDRPGVTRD------RMEGY-VKVGD 49


>gi|86142085|ref|ZP_01060609.1| GTP-binding protein EngA [Leeuwenhoekiella blandensis MED217]
 gi|85831648|gb|EAQ50104.1| GTP-binding protein EngA [Leeuwenhoekiella blandensis MED217]
          Length = 433

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 175 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFEFNLVDTAGIRRK 234

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E+ D+ LL+
Sbjct: 235 SKVKEDLEFYSVMRSVRAIEHCDVCLLV 262



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      D  G    + DT G +R +
Sbjct: 4   VAIVGRPNVGKSTFFNRLIQRREAIVDSVSGVTRDRHYGKTDWNGKEFSVIDTGGYVRGS 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DDI E++  K+  L ++ AD I+ + ++ +
Sbjct: 64  DDIFEEQIDKQVELAIDEADAIIFMVDVEA 93


>gi|293363486|ref|ZP_06610242.1| ribosome-associated GTPase EngA [Mycoplasma alligatoris A21JP2]
 gi|292552835|gb|EFF41589.1| ribosome-associated GTPase EngA [Mycoplasma alligatoris A21JP2]
          Length = 434

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 5/99 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  NAGKSSL N LAK++ +IV++I GTTRD +   +++ G    I DTAGI +
Sbjct: 171 FKLSIIGKPNAGKSSLLNNLAKENRSIVSEIAGTTRDSVKSIVEINGQKYNIIDTAGIMK 230

Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSKKEIS 315
              +VE      + R    +  ADL L++  ++S  +IS
Sbjct: 231 KSRLVESVDHYALMRAMDSLNEADLSLII--VDSTSQIS 267



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 19/154 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+ FN L  + V+IV D PG TRD L  ++D  G  +K  DT GI   
Sbjct: 4   KVAIIGKPNVGKSTFFNRLIGRKVSIVYDQPGVTRDRLYENVDWVGKQLKFIDTGGIEIE 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----FPKNI------DFIFIGTKSD 330
           +   +++   +  + +E AD+I+ L   +   EI+    F  NI        I +  K +
Sbjct: 64  NKPFQEQIQIQAKIAIEEADVIIFL--FDGTSEITNDDLFIMNILRKSNKHIITVANKLE 121

Query: 331 L-----YSTYTEEYDHL--ISSFTGEGLEELINK 357
                 YS Y    DH+  IS+  GEG+ E++++
Sbjct: 122 SNQQFDYSWYKLGSDHIFAISALHGEGVGEVLDE 155


>gi|72383562|ref|YP_292917.1| GTP-binding protein EngA [Prochlorococcus marinus str. NATL2A]
 gi|123620367|sp|Q46H20|DER_PROMT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|72003412|gb|AAZ59214.1| Small GTP-binding protein protein domain:GTP-binding protein
           [Prochlorococcus marinus str. NATL2A]
          Length = 456

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 3/97 (3%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L E+  +  ++ I+G  N GKSSL N++  +  AIV+ I GTTRD +   +  +G   K+
Sbjct: 170 LDEVSDSPVQLAIIGRPNVGKSSLLNSICGETRAIVSSIRGTTRDTIDTRITHQGKEWKL 229

Query: 272 SDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
            DTAGIR    +    E  GI R+F  +E +D+ +L+
Sbjct: 230 VDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLV 266



 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCQSREAIVHDEPGVTRDRTYQDGFWRDRDFKVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|289522946|ref|ZP_06439800.1| ribosome-associated GTPase EngA [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503489|gb|EFD24653.1| ribosome-associated GTPase EngA [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 443

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 3/91 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSS+FN+L  ++ AIV+++PGTTRD +  ++  EG    + DTAG+R+ 
Sbjct: 179 KISIVGRPNVGKSSIFNSLIGEERAIVSNLPGTTRDPIDTEITFEGKKYLLIDTAGLRKK 238

Query: 281 D---DIVEKEGIKRTFLEVENADLILLLKEI 308
               D +E   + R    ++ +D++LL+ ++
Sbjct: 239 SRLKDDIEFYSLLRAERAIDRSDVVLLVLDV 269



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 8/93 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           RN   + I+G +N GKS+LFN L +K +AIV DIPG TRD L   ++  G    + DT G
Sbjct: 3   RNTNVVAIIGRANVGKSTLFNRLIQKRMAIVDDIPGVTRDRLYAQVEWAGKSFYLVDTGG 62

Query: 277 IRETD----DIVEKEGIKRTFLEVENADLILLL 305
               D    D+V K+ I R    +E A +I+ +
Sbjct: 63  FPNEDEPLFDLVGKQ-IDRA---IEEASVIIFV 91


>gi|122701405|emb|CAL88092.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|300814694|ref|ZP_07094944.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511167|gb|EFK38417.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 439

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSLFN L+K++ +IVT+I GTTRD +   +  +       DTAG+R+ 
Sbjct: 177 RVSIIGKPNVGKSSLFNYLSKEERSIVTNIAGTTRDAIDTKISYKDNEYIFVDTAGLRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VE+  + RT   +E + + LLL
Sbjct: 237 KKIKESVERYSVIRTLTAIERSSVCLLL 264



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 19/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  K ++I  D PG TRD +        Y   + DT G+   D
Sbjct: 6   VSIIGKPNVGKSTLFNKILGKKISITEDTPGVTRDRIYQTASWLDYSFLLVDTGGLDLKD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           + +    IK +  + VE + +I+ L +       + +EI+      N   I    K D  
Sbjct: 66  EDIFMSSIKAQVDIAVETSQVIIFLTDGIEGVSPTDREIANYLRKSNKKVILAVNKCDAK 125

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKI-KSI 361
            T    YD         +L+SS  G GL +L++++ KSI
Sbjct: 126 KTKENIYDFFELGLGEPYLVSSEQGTGLGDLLDEVTKSI 164


>gi|260173329|ref|ZP_05759741.1| putative GTP-binding protein, putative GTPase [Bacteroides sp. D2]
 gi|299149447|ref|ZP_07042504.1| GTP-binding protein [Bacteroides sp. 3_1_23]
 gi|315921602|ref|ZP_07917842.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|298512634|gb|EFI36526.1| GTP-binding protein [Bacteroides sp. 3_1_23]
 gi|313695477|gb|EFS32312.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 396

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 18/166 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V+D PGTT D+++  ++++G       DT G
Sbjct: 10  NRLHIALFGRRNSGKSSLINALTGQDTALVSDTPGTTTDLVSKAMEIQGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---------KEINS---KKEISFPKNIDFIF 324
             +  ++ E   I RT   +E  D+ LLL         KE+ +   +K I     ++ I 
Sbjct: 70  FDDEGELGELR-ISRTLKAIEKTDIALLLCGDTTFSHEKEMLALLKEKNIPVIPVLNKID 128

Query: 325 IGTKSDLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKF 366
           I   SD  +TY EE       LIS+    G+E++   I   L + F
Sbjct: 129 IRENSDSLATYIEEECKIRPLLISAKEKTGIEQIRQAILEKLPSDF 174


>gi|329297578|ref|ZP_08254914.1| GTP-binding protein Der [Plautia stali symbiont]
          Length = 496

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDDREYILIDTAGVRKR 268

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I+++  IS
Sbjct: 269 GKITDTVEKFSVIKTLQAIEDANVVMLV--IDARAGIS 304



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L L
Sbjct: 65  EGVENRMAEQSLLAIEEADVVLFL 88


>gi|292806566|gb|ADE42413.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|317049132|ref|YP_004116780.1| ribosome-associated GTPase EngA [Pantoea sp. At-9b]
 gi|316950749|gb|ADU70224.1| ribosome-associated GTPase EngA [Pantoea sp. At-9b]
          Length = 496

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDDREYILIDTAGVRKR 268

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A++++L+  I+++  IS
Sbjct: 269 GKITDTVEKFSVIKTLQAIEDANVVMLV--IDARAGIS 304



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ L +E AD++L L
Sbjct: 65  EGVENRMAEQSLLAIEEADVVLFL 88


>gi|325299810|ref|YP_004259727.1| GTP-binding protein engA [Bacteroides salanitronis DSM 18170]
 gi|324319363|gb|ADY37254.1| GTP-binding protein engA [Bacteroides salanitronis DSM 18170]
          Length = 437

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSSL NA   ++  IVT+I GTTRD +    D  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSLINAFVGEERNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 237 NKVNEDLEYYSVIRSIRAIENSDVCILM 264



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      + +G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWQGKEFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             +DDI E+E  K+  L ++ AD+IL L ++ +
Sbjct: 62  VNSDDIFEEEIRKQVILAMDEADVILFLVDVKN 94


>gi|317121946|ref|YP_004101949.1| ribosome-associated GTPase EngA [Thermaerobacter marianensis DSM
           12885]
 gi|315591926|gb|ADU51222.1| ribosome-associated GTPase EngA [Thermaerobacter marianensis DSM
           12885]
          Length = 455

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN + ++ +AI  D+PG TRD L  D D  G    + DT G+ E D
Sbjct: 5   VAIVGRPNVGKSTLFNRIIERRLAIEDDVPGVTRDRLYADTDWAGRAFTLVDTGGLAEGD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D +  +  ++    V  AD+++++
Sbjct: 65  DPLTVQVRRQVEAAVREADVLVMV 88



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 34/192 (17%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           + G+ GEI      + I+G  N GKSSL N L  ++  +V+DIPGTTRD + +       
Sbjct: 180 AWGEPGEI-----AVAIVGRPNVGKSSLVNRLLGEERVVVSDIPGTTRDAVDVLWRRGER 234

Query: 268 LVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEI---SF 316
           + +  DTAG+R      D VE     RT   +  AD+  L+        +  K I   + 
Sbjct: 235 VFRFIDTAGLRRKSRVKDDVEFYSTLRTQRALARADVACLVLDARDPATDQDKRIAGMAL 294

Query: 317 PKNIDFIFIGTKSDLYS-------TYTE----EYDHL-------ISSFTGEGLEELINKI 358
            +    +    K DL +        Y E    EYD L       +S+ TG+ ++ L+  I
Sbjct: 295 EEGKACVLAVNKWDLVARGPDTADQYREALYREYDFLQFAPIVFLSALTGQRIDRLVEWI 354

Query: 359 KSILSNKFKKLP 370
             +  N  +++P
Sbjct: 355 GRVADNHRRQVP 366


>gi|122701401|emb|CAL88090.1| GTPase [Helicobacter pylori]
 gi|122701443|emb|CAL88111.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|78184221|ref|YP_376656.1| GTP-binding protein EngA [Synechococcus sp. CC9902]
 gi|123581907|sp|Q3AZ65|DER_SYNS9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78168515|gb|ABB25612.1| Small GTP-binding protein domain [Synechococcus sp. CC9902]
          Length = 455

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD +  ++  E    ++ DTAGIR  
Sbjct: 179 QMSIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTNIVRENRPWRLVDTAGIRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  +E +D+ +L+
Sbjct: 239 RSVNYGPEYFGINRSFKAIERSDVCVLV 266



 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|306842332|ref|ZP_07474991.1| small GTP-binding protein [Brucella sp. BO2]
 gi|306287548|gb|EFM59007.1| small GTP-binding protein [Brucella sp. BO2]
          Length = 483

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 24/165 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDARLYDLKFQVIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326
           E  +D +E     +T   +  AD +L +  I++K  I+ P +  F           + + 
Sbjct: 62  EAANDSLEARMRAQTEAAISEADAVLFV--IDAKAGIT-PADSTFAEAVRRSGKPVVLVA 118

Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
            K++   +    YD           IS+  G+G+ +L + I  +L
Sbjct: 119 NKAEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL 163



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N +  +D  +     G TRD ++ D +  G  +K+ DTAG+R  
Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRK 272

Query: 281 DDIVEK 286
             + EK
Sbjct: 273 ARVQEK 278


>gi|116071134|ref|ZP_01468403.1| GTP-binding protein EngA [Synechococcus sp. BL107]
 gi|116066539|gb|EAU72296.1| GTP-binding protein EngA [Synechococcus sp. BL107]
          Length = 455

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD +  ++  E    ++ DTAGIR  
Sbjct: 179 QMSIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTNIVRENRPWRLVDTAGIRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  +E +D+ +L+
Sbjct: 239 RSVNYGPEYFGINRSFKAIERSDVCVLV 266



 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|298373119|ref|ZP_06983109.1| ribosome-associated GTPase EngA [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298276023|gb|EFI17574.1| ribosome-associated GTPase EngA [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 438

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL NA    +  IVT+I GTTRD +    +  GY   + DTAGIR+ 
Sbjct: 178 KLAVVGRPNAGKSSLVNAFLDDNRNIVTEIAGTTRDSIYTRYNKFGYDFYLVDTAGIRKK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VE   + R    +EN+D+ +L+
Sbjct: 238 AKVNEDVEYYSVIRAIRAIENSDVCVLM 265



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L K   AIV D  GTTRD     ++  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTKSRRAIVNDEAGTTRDRHYGKVEWNGKEFSVIDTGGWVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           +DI E+E  ++  + +E AD+IL + ++
Sbjct: 65  EDIFEEEINRQVSIAIEEADVILFVVDV 92


>gi|304406963|ref|ZP_07388617.1| ribosome-associated GTPase EngA [Paenibacillus curdlanolyticus YK9]
 gi|304343950|gb|EFM09790.1| ribosome-associated GTPase EngA [Paenibacillus curdlanolyticus YK9]
          Length = 440

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL NA+  ++  IV+D+ GTTRD +    + +G    + DTAG+R+ 
Sbjct: 178 RVALIGRPNVGKSSLVNAILGEERVIVSDVAGTTRDAIDTPFEKDGQRYVLIDTAGMRKR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R+   +E AD++L+L
Sbjct: 238 GKVYETTEKYSVMRSLKAIERADVVLIL 265



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS++FN +    +AIV D PG TRD +    +  G    I DT GI  + 
Sbjct: 6   IAIVGRPNVGKSTIFNRVIGDRLAIVEDKPGVTRDRIYGTGEWNGRAFSIVDTGGIEIDG 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +D + K    +  L VE AD+I+ +
Sbjct: 66  EDEIMKSVRMQAELAVEEADVIIFM 90


>gi|192362315|ref|YP_001981972.1| GTP-binding protein EngA [Cellvibrio japonicus Ueda107]
 gi|238692428|sp|B3PDM5|DER_CELJU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|190688480|gb|ACE86158.1| GTP-binding protein EngA [Cellvibrio japonicus Ueda107]
          Length = 466

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 8/119 (6%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           + ++ D+L    +I     QG+       G KI I+G  N GKS+L N L  +D  +V D
Sbjct: 152 RSLMEDVLAEYPEIPEEEQQGEA-----TGIKIAIVGRPNVGKSTLVNRLLGEDRVVVYD 206

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
            PGTTRD + I+         + DTAG+R   +I   VEK  I +T   + +A++++L+
Sbjct: 207 QPGTTRDSIYINYTRFDKPYTLIDTAGVRRRKNIDLAVEKFSIVKTMQAIADANVVILV 265



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD    +  LE     + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTNSRDALVADYPGLTRDRKYGEARLENRRFIVIDTGGISGEE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++     ++ L ++ AD++L +
Sbjct: 65  EGIDSAMAGQSLLAIQEADIVLFI 88


>gi|122701379|emb|CAL88079.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|86608739|ref|YP_477501.1| GTP-binding protein EngA [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123502588|sp|Q2JM09|DER_SYNJB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|86557281|gb|ABD02238.1| GTP-binding protein EngA [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 459

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N L   + AIV+ I GTTRD +   +  EG   ++ DTAGIR+ +
Sbjct: 181 VSIVGRPNVGKSSLLNRLVGSERAIVSPISGTTRDAIDTVVTWEGQPYRLIDTAGIRKKN 240

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   +E   I R F  ++ +D +LL+
Sbjct: 241 RVQYGIEFFSINRAFKAIQRSDAVLLV 267



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +A    AIV D PG TRD L  +++  G  +++ DT G+   D
Sbjct: 6   VAIVGRPNVGKSTLVNRMAGVRSAIVHDEPGVTRDRLYQEVEWNGRRLRVVDTGGLVFGD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|122701465|emb|CAL88122.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNCLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|218437880|ref|YP_002376209.1| GTP-binding protein EngA [Cyanothece sp. PCC 7424]
 gi|226741132|sp|B7KHD2|DER_CYAP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|218170608|gb|ACK69341.1| small GTP-binding protein [Cyanothece sp. PCC 7424]
          Length = 452

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  K+ I+G  N GKSSL NAL  ++ AIV+ I GTTRD + + +       ++ DTAGI
Sbjct: 175 NEIKVAIVGRPNVGKSSLLNALTGENRAIVSPISGTTRDAIDMVVQRNEQQYRLIDTAGI 234

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R   ++    E   I R F  +  AD++L +
Sbjct: 235 RRKKNVEYGAEFFSINRAFKAIRRADVVLFV 265



 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LA    AIV D PG TRD        +    ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLAGDQQAIVHDEPGITRDRTYRPAFWQDRDFQVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|195952865|ref|YP_002121155.1| small GTP-binding protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932477|gb|ACG57177.1| small GTP-binding protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 429

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+  +G  N+GKSSL N++ K+D  IV++I GTTRD + ++   EG    + DTAGIR  
Sbjct: 173 KLSFVGKPNSGKSSLLNSILKQDRVIVSNIAGTTRDAVDVEFSYEGKDFILVDTAGIRRP 232

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
            +I   VE   + R+   +E +D+  L+
Sbjct: 233 SNIDYGVEFFAVNRSLEAIEKSDVCALV 260



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 42/62 (67%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KIVI G +N GKS+LFN ++K+ ++IV +IPG TRDV+      +  + K+ DT G+ ++
Sbjct: 3   KIVITGRANVGKSTLFNKISKRRISIVENIPGITRDVIESKAVFQDKVFKLVDTGGLTDS 62

Query: 281 DD 282
            +
Sbjct: 63  KE 64


>gi|153853314|ref|ZP_01994723.1| hypothetical protein DORLON_00710 [Dorea longicatena DSM 13814]
 gi|149754100|gb|EDM64031.1| hypothetical protein DORLON_00710 [Dorea longicatena DSM 13814]
          Length = 442

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSS+ N L  K   IV+D+ GTTRD +  ++   G      DTAG+R  
Sbjct: 179 RVAIVGKPNVGKSSIINKLTGKQRVIVSDVAGTTRDAIDTNVKYNGKDYVFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  I RT   VE AD++L++
Sbjct: 239 SKIKEELERYSIIRTVTAVERADVVLVV 266



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  D+        + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADVTWLDKEFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+  +  ++  + ++ AD+I+ + ++
Sbjct: 66  KDIILSQMREQAQIAIDTADVIIFITDV 93


>gi|144898965|emb|CAM75829.1| Small GTP-binding protein domain:GTP-binding [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 470

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 24/162 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN LA + +AIV D+PG TRD       L G   ++ DTAG  +
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLAGRRLAIVHDMPGVTRDRREAAASLLGMEFRVIDTAGFED 62

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGT 327
             D+ +E     +T   V  AD++L+L  I+++  ++ P +  F           I +  
Sbjct: 63  AHDESIEARMRYQTDTAVAEADVVLML--IDARAGVT-PLDAHFADYLRKQKTPVILVAN 119

Query: 328 KSD-------LYSTYTEEYDHLI--SSFTGEGLEELINKIKS 360
           K +       +Y +Y       +  S+  GEGL EL + ++ 
Sbjct: 120 KCEGKAGAPGMYESYGLGLGEPVPFSAEHGEGLAELFDALRP 161



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 83/181 (45%), Gaps = 29/181 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++VI+G  N GKS+L N L  +D  +     G TRD +++D       +++ DTAG+R+ 
Sbjct: 201 QLVIVGRPNVGKSTLVNRLLGQDRMLTGPEAGLTRDAISVDWQHRDRGIRLVDTAGLRKR 260

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPKNI-----DFIFIGTKS 329
              +D VEK     T   +  A++++L+ +   I  K++++  + +       +    K 
Sbjct: 261 ANIEDPVEKLSASNTLEAIRMAEVVVLVMDSAAILDKQDLTIARMVVEEGRSLVIAINKW 320

Query: 330 DLYSTYTEEYDHL------------------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           D      E    L                  IS+ TG G++++++ + ++     +++P 
Sbjct: 321 DAVEKPQEALQRLADRLETSLPMVRGLPTVTISALTGRGVDKMMDAVLAVHKTWNRRIPT 380

Query: 372 S 372
           S
Sbjct: 381 S 381


>gi|122701363|emb|CAL88071.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|150026003|ref|YP_001296829.1| GTP-binding protein EngA [Flavobacterium psychrophilum JIP02/86]
 gi|166198714|sp|A6H103|DER_FLAPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|149772544|emb|CAL44027.1| GTP-binding protein EngA [Flavobacterium psychrophilum JIP02/86]
          Length = 436

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  K+  +VTDI GTTRD +    D  G+   + DTAGIR  
Sbjct: 178 RFAVVGRPNAGKSSFINALIGKERFMVTDIAGTTRDSIDTKYDRFGFEFNLVDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E+AD+ +L+
Sbjct: 238 AKVKEDLEFYSVMRSVRAIEHADVCILI 265



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++  AIV  + G TRD      +  G    + DT G IR +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYIRGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           DDI E E  K+  L ++ +D+I+ + ++
Sbjct: 65  DDIFEGEIRKQVELAIDESDVIIFVVDV 92


>gi|122702621|emb|CAL88500.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303
            ++ KE IK   L+V + +DLIL
Sbjct: 69  ALLSKE-IKALNLKVAQMSDLIL 90


>gi|122700681|emb|CAL87929.1| GTPase [Helicobacter pylori]
 gi|122700687|emb|CAL87932.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S +++      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|18075561|emb|CAD11176.1| GTP-binding protein [Helicobacter pylori]
 gi|122702801|emb|CAL88590.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNCLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|84387629|ref|ZP_00990646.1| GTP-binding protein EngA [Vibrio splendidus 12B01]
 gi|84377474|gb|EAP94340.1| GTP-binding protein EngA [Vibrio splendidus 12B01]
          Length = 493

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRRR 266

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +I   VEK  + +T   +E+A+++LLL  I+++  IS
Sbjct: 267 KNINETVEKFSVVKTLKAIEDANVVLLL--IDARDNIS 302



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD          +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHFSEHDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAEQSLAAIDEADVVLFM 88


>gi|148979611|ref|ZP_01815616.1| GTP-binding protein EngA [Vibrionales bacterium SWAT-3]
 gi|145961696|gb|EDK26993.1| GTP-binding protein EngA [Vibrionales bacterium SWAT-3]
          Length = 493

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMSRDEREYVLIDTAGVRRR 266

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +I   VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 267 KNINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 302



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAQLGEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAEQSLAAIDEADVVLFM 88


>gi|122701557|emb|CAL88168.1| GTPase [Helicobacter pylori]
 gi|242255830|gb|ACS88899.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S +++      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|122700597|emb|CAL87887.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRDV    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|331090851|ref|ZP_08339697.1| GTP-binding protein engA [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330399710|gb|EGG79372.1| GTP-binding protein engA [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 442

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 6/121 (4%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           SS+  + D+L   +++  H  +    E   +  +I I+G  N GKSS+ N L   +  IV
Sbjct: 149 SSRLGIGDML---DEVVKHFPETTAEEAEDDRPRIAIVGKPNVGKSSIINKLQGDNRVIV 205

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILL 304
           +DI GTTRD +   +   G      DTAG+R  + I   +E+  I RT   VE AD++L+
Sbjct: 206 SDIAGTTRDAIDTPITYNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLI 265

Query: 305 L 305
           +
Sbjct: 266 V 266



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  +++       + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYAEVNWLDKEFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+  +  ++  + ++ AD+I+ L ++
Sbjct: 66  KDIILSQMREQAQIAIDTADVIIFLTDV 93


>gi|255994066|ref|ZP_05427201.1| ribosome-associated GTPase EngA [Eubacterium saphenum ATCC 49989]
 gi|255993734|gb|EEU03823.1| ribosome-associated GTPase EngA [Eubacterium saphenum ATCC 49989]
          Length = 441

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 9/132 (6%)

Query: 183 DVQNFSSKEVLN--DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           DVQ  S+  +L   D+L    D ++  +Q  L E I     + ++G  NAGKSSL N LA
Sbjct: 142 DVQGVSAANMLGLGDVLDFIVD-NAPKAQTTLDEDI---LSVAVIGRPNAGKSSLLNYLA 197

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVE 297
            ++ AIV+++ GTTRD +   +  +G    I DTAGIR      D VEK  + R    +E
Sbjct: 198 SENRAIVSEMQGTTRDSIDEVVTYKGDRYNIIDTAGIRRKSKIGDAVEKFSVIRAISAIE 257

Query: 298 NADLILLLKEIN 309
             D+ +L+ + N
Sbjct: 258 RCDVCVLMIDAN 269



 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N     I+G  N GKS+ FN L  K ++IV D  G TRD +        + + + DT GI
Sbjct: 3   NRVTAAIIGSPNTGKSTFFNKLIGKKLSIVHDERGVTRDRIYGYTQWRNHEILLIDTGGI 62

Query: 278 RETD--DIVEKEGIKRTFLEVENADLILLL 305
            ETD  D +     ++  + +E AD+I+ L
Sbjct: 63  -ETDSKDEMMTNIRQQADVAIELADVIIFL 91


>gi|225848630|ref|YP_002728793.1| GTP-binding protein EngA [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644538|gb|ACN99588.1| ribosome-associated GTPase EngA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 443

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 33/179 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  NAGKSSL NA+  ++  +V+DIPGTTRD +    + +       DTAGIR+ 
Sbjct: 182 KVAIVGKPNAGKSSLLNAILNEERVLVSDIPGTTRDTVDTLFEKDSQRFLFLDTAGIRKR 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKE-------------------------INSKK 312
             +   VE   + R+   +E AD+++L+ +                         + +K 
Sbjct: 242 SKVEYGVEFFSVGRSIEAIEKADVVVLVIDAIIGATEQDQKIAGLIQRRYKPAVIVINKI 301

Query: 313 EISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKL 369
           ++   K+I+ +    K  LY     +Y  ++  S++   G+EEL+N+I  + +  +K++
Sbjct: 302 DMLKEKDIEKVIRQVKEKLYFL---DYAPIVLTSAYKKIGIEELLNQIVKVYNQVWKRV 357



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +++ I+G  N GKSSLFN L  K  AIV DIPG TRD +    +  G   ++ DT G   
Sbjct: 2   FRVAIVGRPNVGKSSLFNRLIGKRKAIVEDIPGVTRDRIISQTEWRGVKFEVVDTGGYIT 61

Query: 280 TDDIVEKEGIKRTF-LEVENADLILLL 305
           +D+      I++    E++ ADL++ +
Sbjct: 62  SDEDKFAPYIRKQVEKELQEADLLVFV 88


>gi|50122138|ref|YP_051305.1| GTP-binding protein EngA [Pectobacterium atrosepticum SCRI1043]
 gi|81827050|sp|Q6D280|DER_ERWCT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|49612664|emb|CAG76114.1| probable GTP-binding protein [Pectobacterium atrosepticum SCRI1043]
          Length = 495

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE     ++ + +E AD++L +
Sbjct: 65  DGVETRMAGQSLVAIEEADIVLFM 88



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYILIDTAGVRKR 268

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 269 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 304


>gi|308182994|ref|YP_003927121.1| GTP-binding protein EngA [Helicobacter pylori PeCan4]
 gi|308065179|gb|ADO07071.1| GTP-binding protein EngA [Helicobacter pylori PeCan4]
          Length = 460

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S +++      F  N +   +  K D   
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKTNPNCFLVINKIDNDK 129

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LIN I S L
Sbjct: 130 EKERAYAFSSFGMPKSFNISVSHNRGISALINAILSAL 167



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 47/231 (20%)

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +   IE DLD    E ++N + KE   +                  E+I+ G    I+G 
Sbjct: 169 LNQIIEQDLDADILESLENNAPKEETKE------------------EVIQVG----IIGR 206

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VE 285
            N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR    I  +E
Sbjct: 207 VNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHRGKILGIE 266

Query: 286 KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-YSTYT 336
           K  + RT   +E + + LL+ ++++           ++   ++  I I  K D+ Y+ Y 
Sbjct: 267 KYALDRTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYE 326

Query: 337 E------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           E            EY  +I  S      ++E+ +KI  +     K++P S+
Sbjct: 327 EIMAALKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSL 377


>gi|209527936|ref|ZP_03276422.1| small GTP-binding protein [Arthrospira maxima CS-328]
 gi|209491626|gb|EDZ91995.1| small GTP-binding protein [Arthrospira maxima CS-328]
          Length = 453

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N    ++ AIV+ I GTTRD +   ++  G   ++ DTAGIR  
Sbjct: 178 RVAIVGRPNVGKSSLLNTFLGQERAIVSPISGTTRDAIDTIVEHNGNTYRLVDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R F  +  AD++L +
Sbjct: 238 KHVEYGAEFFGINRAFKAIRRADVVLFV 265



 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 30/61 (49%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD        +     + DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLTQTQDAIVHDQPGMTRDRTYRSAYWQDREFTVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|291460309|ref|ZP_06599699.1| ribosome-associated GTPase EngA [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291417064|gb|EFE90783.1| ribosome-associated GTPase EngA [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 441

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN +A K ++IV D PG TRD +  D +   +   + DT GI  ++
Sbjct: 6   VAVVGRPNVGKSTLFNVIAGKQISIVKDTPGVTRDRIYADCEWLNHPFTLVDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D++  +   +  L +E AD+IL + ++ S
Sbjct: 66  RDVLLSQMRSQAELAIETADVILFVVDVRS 95



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           H  +G   E   +  ++ ++G  N GKSS+ N L  ++  IV++I GTTRD +  ++  +
Sbjct: 164 HFPKGLEEEAEDDRIRVALIGKPNVGKSSMINKLLGENRVIVSEIAGTTRDAIDTEIVHD 223

Query: 266 GYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           G      DTAG+R      D +E+  + RT   V+ AD+ ++L
Sbjct: 224 GERYIFIDTAGLRRKGRVTDEIERYSVIRTVSAVDRADICVVL 266


>gi|121607080|ref|YP_994887.1| GTP-binding protein EngA [Verminephrobacter eiseniae EF01-2]
 gi|166225932|sp|A1WE12|DER_VEREI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|121551720|gb|ABM55869.1| small GTP-binding protein [Verminephrobacter eiseniae EF01-2]
          Length = 468

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ + G  N GKS+L N    ++  +  D PGTTRD +T+  +  G   ++ DTAG+R  
Sbjct: 200 RLAVAGRPNVGKSTLINTWLGEERLVAFDTPGTTRDAITVPFERNGQRFELVDTAGLRRK 259

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VEK  + +T   +E+A ++LLL
Sbjct: 260 GKVFAAVEKFSVVKTLQAIESAHVVLLL 287



 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + ++G +N GKS+LFN L +   A+V D  G TRD
Sbjct: 5   MALVGRANVGKSTLFNRLTRSRDALVADFAGLTRD 39


>gi|123965688|ref|YP_001010769.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9515]
 gi|166225838|sp|A2BV51|DER_PROM5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123200054|gb|ABM71662.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str.
           MIT 9515]
          Length = 458

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL NA+  +  AIV+DI GTT D +   +    +L KI DTAGIR   ++
Sbjct: 182 IIGRPNVGKSSLLNAICGEKRAIVSDISGTTTDSIDTLIKKNSHLWKIVDTAGIRRKKNV 241

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E  GI R F  ++ +D+ +L+
Sbjct: 242 KYGTEFFGINRAFKSIDRSDVCVLV 266



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   ++ DT G + E 
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQVVDTGGLVFED 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
           D     E   + FL +E A + L + + N
Sbjct: 66  DSEFLPEIRTQVFLALEEASIALFVVDGN 94


>gi|122701349|emb|CAL88064.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303
            ++ KE IK   L+V + +DLIL
Sbjct: 69  ALLSKE-IKALNLKVAQMSDLIL 90


>gi|122701597|emb|CAL88188.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S +++      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERVYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|225011402|ref|ZP_03701840.1| small GTP-binding protein [Flavobacteria bacterium MS024-2A]
 gi|225003905|gb|EEG41877.1| small GTP-binding protein [Flavobacteria bacterium MS024-2A]
          Length = 434

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  N+L  KD  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINSLIGKDRYIVTDIAGTTRDSIDTQYNRFGFDFNLVDTAGIRRK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E  D+ LL+
Sbjct: 236 AKVKEDIEFYSVMRSVRAIEYCDVCLLV 263



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+ FN + +K  AIV  I G TRD      D  G    + DT G  E +
Sbjct: 5   VAIVGRPNVGKSTFFNRMIQKREAIVDSISGVTRDRHYGKSDWNGRNFTLIDTGGYVEGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           DDI +KE  K+  L +E AD+I+ + ++
Sbjct: 65  DDIFQKEIDKQVNLAIEEADVIVFMVDV 92


>gi|161349991|ref|YP_175372.2| GTP-binding protein EngA [Bacillus clausii KSM-K16]
          Length = 437

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKSSL NAL  ++  IV+ IPGTTRD +      +G    + DTAG+R+ 
Sbjct: 177 KMALIGRPNVGKSSLVNALLGEERVIVSQIPGTTRDAIDTSFTRDGQHYVVIDTAGMRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R+   +E +D++L++
Sbjct: 237 GKVYEATEKYSVLRSLKAIERSDVVLVV 264



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + VAIV D+PG TRD L    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVAIVEDLPGVTRDRLYSKGEWLNHEFYVIDTGGIELGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           + +  +  ++  + ++ A++I+ +  +N ++ I+
Sbjct: 66  EPLLVQMRQQAEIAIDEANVIIFM--VNGREGIT 97


>gi|29349244|ref|NP_812747.1| GTP-binding protein EngA [Bacteroides thetaiotaomicron VPI-5482]
 gi|253573091|ref|ZP_04850482.1| GTP-binding protein engA [Bacteroides sp. 1_1_6]
 gi|298384785|ref|ZP_06994344.1| ribosome-associated GTPase EngA [Bacteroides sp. 1_1_14]
 gi|37999664|sp|Q8A135|DER_BACTN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|29341152|gb|AAO78941.1| putative phosphoglycerate dehydrogenase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837314|gb|EES65414.1| GTP-binding protein engA [Bacteroides sp. 1_1_6]
 gi|298261929|gb|EFI04794.1| ribosome-associated GTPase EngA [Bacteroides sp. 1_1_14]
          Length = 437

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +ENAD+ +L+
Sbjct: 237 NKVNEDLEYYSVVRSIRSIENADVCILM 264



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 22/165 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP-------KNIDFIFIGTKSD-- 330
           DDI E+E  K+  L VE AD+IL + ++ N   ++           N   I +  K+D  
Sbjct: 65  DDIFEEEIRKQVLLAVEEADVILFVVDVMNGVTDLDMQVATILRRANSPVIMVANKTDNN 124

Query: 331 -LYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKK 368
            L     E Y       + IS+ TG G  +L++ I S    KF K
Sbjct: 125 ELQYNAPEFYKLGLGDPYCISAITGSGTGDLMDLIVS----KFNK 165


>gi|292806662|gb|ADE42461.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRDV    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|213649668|ref|ZP_03379721.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 339

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 53  KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 112

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 113 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 148


>gi|119953297|ref|YP_945506.1| GTP-binding protein EngA [Borrelia turicatae 91E135]
 gi|119862068|gb|AAX17836.1| GTP-binding protein [Borrelia turicatae 91E135]
          Length = 438

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +FLKN      S GKL        KI ++G  N+GKS+L N LA ++V+IV+ + GTTRD
Sbjct: 162 IFLKN------SVGKLAIDDNVDVKIGLIGKPNSGKSTLINFLAGREVSIVSRVAGTTRD 215

Query: 257 VLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEI 308
            +       G   ++ DTAGIR     ++++E   + R    ++  D++ LL ++
Sbjct: 216 FVKARFQRNGKTFELIDTAGIRRRARVNELIEHYSVSRALRVIDMVDIVFLLVDV 270



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 52/98 (53%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +G  +++   ++I+G  N GKS+LFN L   + +I  +I G TRD++     ++ Y   +
Sbjct: 2   IGSKVQDYKSVLIVGRPNVGKSTLFNKLLSSNRSITDEIYGVTRDLIKEICTVDSYKFYL 61

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D  G     D + +  + +    +++ DLIL + ++N
Sbjct: 62  IDAGGFTLLRDELSRVVVNKVISLLDSIDLILFVLDVN 99


>gi|308050453|ref|YP_003914019.1| ribosome-associated GTPase EngA [Ferrimonas balearica DSM 9799]
 gi|307632643|gb|ADN76945.1| ribosome-associated GTPase EngA [Ferrimonas balearica DSM 9799]
          Length = 495

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 208 KLAIIGKPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 267

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VEK  + +T   +E+A+++LL+
Sbjct: 268 KSVYEAVEKFSVIKTLQAIEDANVVLLV 295



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD      +L G+   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTGTRDALVADFPGLTRDRKYGQANLAGHDFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E +  +++   +E AD++L L
Sbjct: 65  EGIETKMAEQSLRAIEEADVVLFL 88


>gi|299473466|emb|CBN77863.1| PEngA, plastid EngA GTPase [Ectocarpus siliculosus]
          Length = 680

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N L  +  +IV+D+PGTTRD +    +  G   ++ DTAGIR   
Sbjct: 400 VAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERGGRTYRLVDTAGIRRKG 459

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEINS 310
            +    E   + R F  +  AD++LL+ ++ +
Sbjct: 460 KVDYGNEFFMVNRAFKAIRRADVVLLMVDVEA 491



 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 222 IVILGHSNAGKSSLFNALAK--KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + ++G  N GKS++ N LAK  KD +IV D  G TRD         G    + DT G+  
Sbjct: 222 VAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVF 281

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLL 305
            D   D+  KE  ++  + +E A  ++++
Sbjct: 282 DDKGGDVFAKEIRQQALIALEEATAVIMV 310


>gi|285018364|ref|YP_003376075.1| GTP-binding protein enga [Xanthomonas albilineans GPE PC73]
 gi|283473582|emb|CBA16085.1| probable gtp-binding protein enga [Xanthomonas albilineans]
          Length = 465

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I  +G  N GKS+L N L  ++  I +D+PGTTRD + +DL+ +    ++ DTAG+R  
Sbjct: 180 RIAFVGRPNVGKSTLVNRLLGEERMIASDVPGTTRDSIAVDLERDDRPYRLIDTAGLRRR 239

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
              ++ VEK  + +T   +E  ++ +LL
Sbjct: 240 GRVEEAVEKFSVFKTLQAIEQCEVAVLL 267



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + ++G  N GKS+LFNAL +   A+V D PG TRD
Sbjct: 5   VALVGRPNVGKSTLFNALTRSRDALVHDQPGVTRD 39


>gi|122701495|emb|CAL88137.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGVAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|229592437|ref|YP_002874556.1| GTP-binding protein EngA [Pseudomonas fluorescens SBW25]
 gi|229364303|emb|CAY52040.1| GTP-binding protein [Pseudomonas fluorescens SBW25]
          Length = 493

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 31/183 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 196 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNDEKYTLIDTAG 255

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309
           +R+   I   VEK  + +T   +++A++++ + +                          
Sbjct: 256 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 315

Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
            +K +   P   DF+ I  +  L+  + E  D H IS+  G G+  L   +++   +   
Sbjct: 316 INKWDGMTPSERDFVKIELQRRLF--FVEFADIHFISALHGTGVGNLYASVQNSFKSAVT 373

Query: 368 KLP 370
           + P
Sbjct: 374 RWP 376



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   AIV D+ G TRD    +   +G    I DT GI   +
Sbjct: 9   IALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYIIVDTGGISGDE 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD++L L
Sbjct: 69  HGMDEKMAEQSLLAIEEADVVLFL 92


>gi|217967546|ref|YP_002353052.1| small GTP-binding protein [Dictyoglomus turgidum DSM 6724]
 gi|217336645|gb|ACK42438.1| small GTP-binding protein [Dictyoglomus turgidum DSM 6724]
          Length = 436

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+  +G  N+GKSSL NAL  +D +IV++IPGTTRD + +  D  G    I DT G+R  
Sbjct: 179 KLAFVGRPNSGKSSLLNALIGRDRSIVSEIPGTTRDAVDLIWDFNGKKYIIVDTPGLRRP 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E+  +++T   +   D+ +++
Sbjct: 239 AKVEEGLEELSVQKTLQTIRRIDIAIMV 266



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 35/180 (19%)

Query: 216 IRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++ G  +V I+G  N GKS LFN +  ++ AIV D PG TRD L    + EG    + D+
Sbjct: 1   MKKGVPVVSIVGRPNVGKSVLFNRIVGEEKAIVADEPGVTRDPLVHLCEHEGKYFYLVDS 60

Query: 275 AGIRETDDIVEKEGIKRTFLEVEN-ADLILLLKEINSKKEISFPKNIDFIFI------GT 327
           AG   TDD+   E I+    EV N +DLIL +  ++ + E++    +D  F+      G 
Sbjct: 61  AGWGLTDDL--SELIQEKIQEVINISDLILFV--VDGRSELT---ALDHEFVDILRKSGK 113

Query: 328 KSDLYSTYTE---EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS-HKRHLYHL 383
           +  L     E   + +  ++ FT  GL E                PF I + HK++LY L
Sbjct: 114 RVILVVNKMEGRIDREEYLAPFTALGLGE----------------PFPISALHKQNLYEL 157


>gi|213585218|ref|ZP_03367044.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 330

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 44  KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 103

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 104 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 139


>gi|167758361|ref|ZP_02430488.1| hypothetical protein CLOSCI_00701 [Clostridium scindens ATCC 35704]
 gi|167664258|gb|EDS08388.1| hypothetical protein CLOSCI_00701 [Clostridium scindens ATCC 35704]
          Length = 442

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSS+ N L  +   IV+DI GTTRD +  D+   G      DTAG+R  +
Sbjct: 180 IAIVGKPNVGKSSIINKLLGEQRVIVSDIAGTTRDAIDTDIVYNGKEYVFIDTAGLRRKN 239

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            I   +E+  I RT   VE AD++L++
Sbjct: 240 KIKEELERYSIIRTVTAVERADVVLIV 266



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA   ++IV D PG TRD +  D++       + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGGMISIVKDTPGVTRDRIYADVNWLDKDFTLIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+  +  ++  + ++ AD+I+ + ++
Sbjct: 66  KDIILSQMREQAQIAIDTADVIIFITDV 93


>gi|169334783|ref|ZP_02861976.1| hypothetical protein ANASTE_01189 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257521|gb|EDS71487.1| hypothetical protein ANASTE_01189 [Anaerofustis stercorihominis DSM
           17244]
          Length = 439

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L +++  H  + K G       KI ++G  NAGKSSL N L  ++  IV++I GTTRD +
Sbjct: 156 LLDEVVKHFPENKKGVEEEERTKIAVVGKPNAGKSSLVNTLLGENRVIVSNISGTTRDAI 215

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
               + EG    + DTAGIR    I   +E     R    +E AD+ LL+
Sbjct: 216 DTIFNYEGKNYTLIDTAGIRRKAKIYDDIEHYSTIRAIGAIERADICLLM 265



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN ++ K ++IV D PG TRD +  D    G    + DT GI  ++
Sbjct: 6   VALIGRPNTGKSTLFNKISGKRISIVEDTPGVTRDRIITDTSWSGNSFFLIDTGGIEPKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DD++ K+  ++  L ++ AD+I+L+
Sbjct: 66  DDVILKQMKRQANLAIDMADVIVLV 90


>gi|77362053|ref|YP_341627.1| GTP-binding protein EngA [Pseudoalteromonas haloplanktis TAC125]
 gi|123744148|sp|Q3ICZ9|DER_PSEHT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|76876964|emb|CAI89181.1| GTP-binding protein, essential for cell growth in E. coli and B.
           subtilis, regulates ribosome synthesis
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 487

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD      + +GY   + DT GI  ++
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYEFIVVDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E E   ++ L +E AD++L L
Sbjct: 65  EGIEIEMADQSLLAIEEADIVLFL 88



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 20/176 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  IV D+PGTTRD + I +        + DTAG+R  
Sbjct: 202 KLAIIGRPNVGKSTLTNRILGEERVIVYDMPGTTRDSIYIPMTRNDKEYILIDTAGVRKR 261

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
            +  D+VEK  + +T   +E+ +++LL+  ++++  IS   + D   +G   +   +   
Sbjct: 262 KKVSDVVEKFSVIKTLQAIEDCNVVLLV--VDARAGIS---DQDLSLLGFALNSGRSL-- 314

Query: 338 EYDHLISSFTGEGLEELI-NKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTV 387
               +I+    +GL++ + ++IKS L  +     F +L F    H   + HL ++V
Sbjct: 315 ----VIAVNKWDGLDDYVKDRIKSELDRRLGFIDFARLHFISALHGTGVGHLFESV 366


>gi|323343319|ref|ZP_08083546.1| ribosome-associated GTPase EngA [Prevotella oralis ATCC 33269]
 gi|323095138|gb|EFZ37712.1| ribosome-associated GTPase EngA [Prevotella oralis ATCC 33269]
          Length = 458

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  N GKSS+ NA   +D  IVT+I GTTRD +    D  G+   + DTAGIR  
Sbjct: 198 RFAVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRK 257

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
           + + E      + R+   +EN+D+ +L+
Sbjct: 258 NKVTEDLEFYSVMRSIRSIENSDVCILM 285



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 22/161 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD      +  G    + DT G +  +
Sbjct: 26  VAIVGRPNVGKSTLFNRLTQSRKAIVSDTAGTTRDRQYGKCNWNGREFSVVDTGGWVVNS 85

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E    ++  +  E AD+++ L +  +          +I     +  + +  K D  
Sbjct: 86  DDIFEDAIRRQVLVATEEADIVIFLVDTMTGVTDWDEDVAQILRRSKLPVLLVANKVDNS 145

Query: 333 STYTEEYDHL---------ISSFTGEG----LEELINKIKS 360
           S Y +  D           +S+ TG G    L+ LI K+K+
Sbjct: 146 SDYYQAADFYRLGLGDPVCVSAATGGGTGDLLDLLITKLKT 186


>gi|225572013|ref|ZP_03780877.1| hypothetical protein RUMHYD_00307 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040546|gb|EEG50792.1| hypothetical protein RUMHYD_00307 [Blautia hydrogenotrophica DSM
           10507]
          Length = 441

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N L  ++  IV+DI GTTRD +   +  +G      DTAG+R  
Sbjct: 179 KIAVVGKPNVGKSSLINKLVGEERVIVSDIAGTTRDAIDTKVKWQGREYVFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  + RT   VE A++++++
Sbjct: 239 GKIKEEIERYSVIRTVTAVERANVVVIM 266



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA ++++IV D PG TRD +  ++        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGENISIVKDTPGVTRDRIYAEVTWLDKSFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           +DI+  +  ++  + ++ AD+I+ L ++  
Sbjct: 66  NDIILSQMREQAQIAIDTADVIVFLVDVRQ 95


>gi|122701381|emb|CAL88080.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303
            ++ KE IK   L+V + +DLIL
Sbjct: 69  ALLSKE-IKALNLKVAQMSDLIL 90


>gi|242255840|gb|ACS88904.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHKVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|213028788|ref|ZP_03343235.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 365

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 79  KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 138

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 139 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 174


>gi|122701629|emb|CAL88204.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303
            ++ KE IK   L+V + +DLIL
Sbjct: 69  ALLSKE-IKSLNLKVAQMSDLIL 90


>gi|122701425|emb|CAL88102.1| GTPase [Helicobacter pylori]
 gi|122701427|emb|CAL88103.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S +++      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|56909884|dbj|BAD64411.1| EngA subfamily GTP-binding protein [Bacillus clausii KSM-K16]
          Length = 439

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKSSL NAL  ++  IV+ IPGTTRD +      +G    + DTAG+R+ 
Sbjct: 179 KMALIGRPNVGKSSLVNALLGEERVIVSQIPGTTRDAIDTSFTRDGQHYVVIDTAGMRKR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R+   +E +D++L++
Sbjct: 239 GKVYEATEKYSVLRSLKAIERSDVVLVV 266



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + VAIV D+PG TRD L    +   +   + DT GI   D
Sbjct: 8   VAIVGRPNVGKSTIFNRIVGERVAIVEDLPGVTRDRLYSKGEWLNHEFYVIDTGGIELGD 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           + +  +  ++  + ++ A++I+ +  +N ++ I+
Sbjct: 68  EPLLVQMRQQAEIAIDEANVIIFM--VNGREGIT 99


>gi|325280073|ref|YP_004252615.1| GTP-binding protein engA [Odoribacter splanchnicus DSM 20712]
 gi|324311882|gb|ADY32435.1| GTP-binding protein engA [Odoribacter splanchnicus DSM 20712]
          Length = 435

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKSS  NAL  ++  IVTDI GTTRD L    +  GY   + DTAG+R+ 
Sbjct: 177 RITIVGRPNVGKSSTINALIGEERNIVTDIAGTTRDTLNTRYNRFGYDFLLVDTAGLRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VE   + R+   +E +D+ +LL
Sbjct: 237 AKVSEDVEFYSVMRSIRAIEESDVCILL 264



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 37/167 (22%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L     AIV +  G TRD         G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGTRKAIVNEESGVTRDRNYGKSSWNGKDFSVIDTGGYVSNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKN----- 319
           DDI E+E  K+  L ++ AD+IL + +                 N  K +    N     
Sbjct: 65  DDIFEEEINKQVILALDEADVILFMVDAEIGVTDLDQNFARLLRNIDKPVYLVANKVDNH 124

Query: 320 ------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                  DF  +G K DL+          ISS +G G  +L++++ S
Sbjct: 125 ERLYEAQDFYRLGIKGDLFC---------ISSVSGSGTGDLLDQVVS 162


>gi|302335702|ref|YP_003800909.1| ribosome-associated GTPase EngA [Olsenella uli DSM 7084]
 gi|301319542|gb|ADK68029.1| ribosome-associated GTPase EngA [Olsenella uli DSM 7084]
          Length = 439

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N LA+++ +IV D+ GTTRD + I +  +G    + DTAG+R+ +
Sbjct: 181 VAIIGRPNVGKSSLTNRLARRERSIVADVAGTTRDAVDITIAWKGQRFCLVDTAGMRKRN 240

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   VE   + R    ++ AD+ LL+
Sbjct: 241 QVHEDVEYYSLVRGLEAMDRADVCLLV 267



 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + ++G  N GKS+L N LA    AIV +  G TRD      D  G    + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLVNRLAVNRDAIVHESRGVTRDRSYHACDWNGREFVLIDTGGIESAR 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           + D+      ++  +  + AD I+ +
Sbjct: 66  SKDVFAPRIREQALVACDEADAIIFV 91


>gi|261406031|ref|YP_003242272.1| GTP-binding protein EngA [Paenibacillus sp. Y412MC10]
 gi|329929734|ref|ZP_08283410.1| ribosome biogenesis GTPase Der [Paenibacillus sp. HGF5]
 gi|261282494|gb|ACX64465.1| ribosome-associated GTPase EngA [Paenibacillus sp. Y412MC10]
 gi|328935712|gb|EGG32173.1| ribosome biogenesis GTPase Der [Paenibacillus sp. HGF5]
          Length = 440

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL NA+  ++  IV+D+ GTTRD +    + +G    + DTAG+R+ 
Sbjct: 178 RVALIGRPNVGKSSLVNAILGEERVIVSDVAGTTRDAIDTPFEKDGQRYVLIDTAGMRKR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E AD++L+L
Sbjct: 238 GKVYETTEKYSVMRAMRAIERADVVLVL 265



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS++FN L    +AIV D PG TRD +    +  G    + DT GI  + 
Sbjct: 6   VAIVGRPNVGKSTIFNRLIGDRLAIVEDKPGITRDRIYGSAEWNGKAFSVIDTGGIEIDG 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DD++ K    +  L +E AD+I+ +
Sbjct: 66  DDMILKSIRMQAELAIEEADVIVFM 90


>gi|122700695|emb|CAL87936.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S +++      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISTLIDAILSVLN 167


>gi|332982413|ref|YP_004463854.1| ribosome-associated GTPase EngA [Mahella australiensis 50-1 BON]
 gi|332700091|gb|AEE97032.1| ribosome-associated GTPase EngA [Mahella australiensis 50-1 BON]
          Length = 437

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L  + ++IV D PG TRD +  D++  G +  + DT GI    
Sbjct: 6   VAIIGRPNVGKSTLFNRLVGRRISIVDDTPGITRDRIYADVEWTGKIFSLVDTGGIDFSG 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D +  + I++    ++ AD+ILL+ + N           +I    N   + +  K D +
Sbjct: 66  KDSIVNQMIRQAQYAIDTADVILLVVDANEGMTSADEEVADILRRSNKSVLLVCNKVDNF 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKI 358
           +     YD           IS+  G G+ +L++KI
Sbjct: 126 NRKDLLYDFYKLGLGDPIPISAGNGLGIGDLLDKI 160



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I ++G  NAGKSS+ N L  ++  IV+D PGTTRD + + ++ EG    + DTAG+R  
Sbjct: 177 RIAVIGKPNAGKSSIVNRLLGQERVIVSDQPGTTRDAIDVLIEHEGDRYILIDTAGLRRK 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + ++ VE+  + R    V+ +D+  L+
Sbjct: 237 AKINEAVERYSVSRALEAVQRSDVAALV 264


>gi|317453527|emb|CBL87873.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKQKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|297623927|ref|YP_003705361.1| ribosome-associated GTPase EngA [Truepera radiovictrix DSM 17093]
 gi|297165107|gb|ADI14818.1| ribosome-associated GTPase EngA [Truepera radiovictrix DSM 17093]
          Length = 439

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL   +  IV D+PGTTRD + +  D  G    + DTAGIR  
Sbjct: 176 RVAIIGRPNVGKSSLLNALVGDERVIVADVPGTTRDSVDVRFDFGGRPFVLIDTAGIRRK 235

Query: 281 DD 282
            D
Sbjct: 236 PD 237



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV--LTIDLDLEGYLVKISDTAGIR 278
           K+ I+G  N GKSSLFN L  +  AIV D+PG TRDV    ++ DL G    + DT G+ 
Sbjct: 3   KVAIVGRPNVGKSSLFNRLVGRREAIVADMPGVTRDVKEARVEDDL-GRSFTLLDTGGLW 61

Query: 279 ETDDIVEKEGIKR 291
             D+   +E IKR
Sbjct: 62  SNDEW--QEPIKR 72


>gi|149190086|ref|ZP_01868363.1| GTP-binding protein EngA [Vibrio shilonii AK1]
 gi|148836116|gb|EDL53076.1| GTP-binding protein EngA [Vibrio shilonii AK1]
          Length = 494

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 206 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDDREYVLIDTAGVRRR 265

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   VE+A+++LL+  I++++ IS
Sbjct: 266 RRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 301



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L L
Sbjct: 65  EGVETKMAEQSLAAIDEADVVLFL 88


>gi|122701621|emb|CAL88200.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGVAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700827|emb|CAL88002.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303
            ++ KE IK   L+V + +DLIL
Sbjct: 69  ALLSKE-IKALNLKVAQMSDLIL 90


>gi|121593586|ref|YP_985482.1| GTP-binding protein EngA [Acidovorax sp. JS42]
 gi|166224299|sp|A1W581|DER_ACISJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|120605666|gb|ABM41406.1| small GTP-binding protein [Acidovorax sp. JS42]
          Length = 447

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +N  ++ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG
Sbjct: 177 KNVIRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQKFELIDTAG 236

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R    +   +EK  + +T   +E+A+++LLL
Sbjct: 237 LRRKGKVFEAIEKFSVVKTLQAIESANVVLLL 268



 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN L K   AIV D  G TRD
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRD 39


>gi|62185493|ref|YP_220278.1| GTP-binding protein EngA [Chlamydophila abortus S26/3]
 gi|81312359|sp|Q5L4W4|DER_CHLAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|62148560|emb|CAH64331.1| putative GTP-binding protein [Chlamydophila abortus S26/3]
          Length = 474

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 26/163 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           +I ILG  N GKSSLFN + K+ +AIV    GTTRD L  ++   G  V++ DT G+ ++
Sbjct: 3   RIAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWGIPVQVIDTGGVDKD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS---------KKEISFPKNIDFIFIGTKSD 330
           ++D  +K   K+       AD++LL+ +I            K++ + K    I +  K+D
Sbjct: 63  SEDHFQKHIYKQALAGANEADILLLVIDIRCGITELDAEIAKQLLYLKK-PLILVANKAD 121

Query: 331 LYSTYTEEYD-H-----------LISSFTGEGLEELINKIKSI 361
              T  +EY  H            +S+   + +++LI+KIK++
Sbjct: 122 ---TLKDEYRVHELYKIGISEIVTVSASHDKHIDKLIHKIKTL 161



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSS+ NAL  ++  I+ ++PGTTRD + I            DTAG+R+ 
Sbjct: 213 KIALIGRPNVGKSSIINALLNEERCIIDNVPGTTRDNIDILYSHNDRSYLFIDTAGLRKM 272

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E     RT   +  AD+ LL+
Sbjct: 273 KSVKNSIEWISSSRTEKAIARADICLLV 300


>gi|307267081|ref|ZP_07548594.1| ribosome-associated GTPase EngA [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917912|gb|EFN48173.1| ribosome-associated GTPase EngA [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 439

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N +  ++  IV++IPGTTRD +      +G    + DTAGIR  
Sbjct: 178 KIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  + R    +E +D+ LL+
Sbjct: 238 SRISESIERYSVLRALAAIERSDICLLM 265



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 48/182 (26%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-----------------ID 261
           G  + I+G  N GKS+LFN +  K ++IV D PG TRD +                  +D
Sbjct: 3   GAMVSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNAEWLDKKFILVDTGGLD 62

Query: 262 LDLEGYL---VKISDTAGIRETDDIV----EKEGIKRTFLEVEN------ADLILLLKEI 308
            + E  L   V++   A I  +D I+     KEG+     E+ N       ++IL+  ++
Sbjct: 63  PNAEDILFSKVRLQVEAAIDASDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNKV 122

Query: 309 NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           +S KE+  P   DF  +G  + +           IS+  G G+ EL++++        KK
Sbjct: 123 DSFKEMP-PTYYDFFSLGLGNPIP----------ISASNGLGIGELLDEV-------VKK 164

Query: 369 LP 370
           LP
Sbjct: 165 LP 166


>gi|317056789|ref|YP_004105256.1| ribosome-associated GTPase EngA [Ruminococcus albus 7]
 gi|315449058|gb|ADU22622.1| ribosome-associated GTPase EngA [Ruminococcus albus 7]
          Length = 443

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 5/89 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           K+ ++G  N GKSSL N +  ++  IV+DI GTTRD    D++ E G  V I DTAGIR 
Sbjct: 179 KVAVIGKPNVGKSSLINRICGEERVIVSDIAGTTRDATDTDIENEFGKFVFI-DTAGIRR 237

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +   VEK  + R ++ V+ AD+ +++
Sbjct: 238 KSKVLESVEKYSVLRAYMAVDRADVAVIV 266



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + ++IV D PG TRD +    +  G    + DT GI  E+
Sbjct: 6   VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYGKCEWLGREFMLVDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           +DI+  +  +++ L + +A++I+L+ +I S
Sbjct: 66  NDIILSQMRRQSELAITSANVIILVTDIKS 95


>gi|292806620|gb|ADE42440.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLRAAQMSDLIL 90


>gi|253576396|ref|ZP_04853726.1| ribosome-associated GTPase EngA [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844289|gb|EES72307.1| ribosome-associated GTPase EngA [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 442

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL NA+  ++  IV+DI GTTRD +    + +G    + DTAG+R+ 
Sbjct: 180 RVALIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAIDTPFEKDGQRYVLIDTAGMRKR 239

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E AD++L+L
Sbjct: 240 GKVYETTEKYSVMRAMKAIERADVVLVL 267



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +    +AIV D PG TRD +    +  G    I DT GI E D
Sbjct: 8   VAIVGRPNVGKSTIFNRIIGDRLAIVEDKPGITRDRIYGASEWNGKPFSIIDTGGI-ELD 66

Query: 282 DIVEKEGIKRTF-----LEVENADLILLL 305
           D   +E I ++      L +E AD+I+ +
Sbjct: 67  D---EEPILKSIRMQAELAIEEADVIVFM 92


>gi|122700863|emb|CAL88020.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRDV    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|332799113|ref|YP_004460612.1| GTP-binding protein engA [Tepidanaerobacter sp. Re1]
 gi|332696848|gb|AEE91305.1| GTP-binding protein engA [Tepidanaerobacter sp. Re1]
          Length = 439

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSL NA+  ++  IV+DIPGTTRD +    ++ G  +   DTAG+R+ 
Sbjct: 177 KVAIIGKPNVGKSSLLNAILGEERVIVSDIPGTTRDAIDSYFEINGKKMLFIDTAGLRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VE     R    ++ AD++L++
Sbjct: 237 SRISEDVEYYSTVRALGAIDRADVVLMV 264



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 24/158 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN +  K ++IV D PG TRD +  + +  G    + DT G+   +
Sbjct: 5   VAVVGKPNVGKSTLFNRIIGKRISIVDDKPGVTRDRIYGEAEWNGKKFTMVDTGGVEPAS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-----------FIFIGTKS 329
            DI+  +  ++    +E A+LIL +  ++ K+ ++ P ++D            + +  K 
Sbjct: 65  KDIILSQMKRQADFAIETANLILFM--VDGKEGLT-PTDLDVAQILRRSGKPVLLVVNKV 121

Query: 330 DLYSTYTEEYDH---------LISSFTGEGLEELINKI 358
           D Y+    +Y+           IS+  G  + +L++KI
Sbjct: 122 DNYTNTAYDYEFYKLGFGDPIFISAVHGLAVGDLLDKI 159


>gi|122702343|emb|CAL88362.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806684|gb|ADE42472.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|294155882|ref|YP_003560266.1| GTP-binding protein [Mycoplasma crocodyli MP145]
 gi|291600022|gb|ADE19518.1| GTP-binding protein [Mycoplasma crocodyli MP145]
          Length = 434

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  NAGKSSL N LAK++ +IV++I GTTRD +   + + G    I DTAGI  
Sbjct: 171 FKLSIIGKPNAGKSSLLNNLAKENRSIVSEIAGTTRDSVKSTVQINGQKYNIIDTAGIMR 230

Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINS 310
              +VE      + R    +  ADL L++ +  S
Sbjct: 231 KSRLVESVDHYALMRAMNSLNEADLSLIIVDATS 264



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 51/85 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+ FN L  K ++IV D PG TRD L  +++  G ++K+ DT GI   
Sbjct: 4   KIAIIGKPNVGKSTFFNRLIGKKISIVYDQPGVTRDRLYENIEWCGRVIKMIDTGGIEIE 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +   +++   +  + ++ AD+I+ +
Sbjct: 64  NKPFQEQIQIQAKIAIDEADVIIFI 88


>gi|269302630|gb|ACZ32730.1| putative GTP-binding protein Era [Chlamydophila pneumoniae LPCoLN]
          Length = 485

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           KI ILG  N GKSSLFN L K+ +AIV    GTTRD L  +L   G   ++ DT G+   
Sbjct: 3   KIAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGELHAFGVPAQVIDTGGVDHN 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI 308
           ++D  +K    +     + AD++LL+ +I
Sbjct: 63  SEDYFQKHIYNQALTGAKEADVLLLVIDI 91



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSS+ N L  ++  I+ + PGTTRD + I    +       DTAG+R+ 
Sbjct: 224 KIALIGRPNVGKSSIINGLLNEERCIIDNTPGTTRDNIDILYSHKDRQYLFIDTAGLRKM 283

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSK 311
             +   +E     RT   +  AD+ LL+ +   K
Sbjct: 284 KSVKNSIEWISSSRTEKAISRADICLLVIDATQK 317


>gi|122702417|emb|CAL88399.1| GTPase [Helicobacter pylori]
          Length = 168

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNCLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEI 314
             + KE         + +DLIL +   K I S ++I
Sbjct: 67  AFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDI 102


>gi|317177334|dbj|BAJ55123.1| GTP-binding protein EngA [Helicobacter pylori F16]
          Length = 461

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 25/178 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             I  +EK  ++RT   +E + + LL+ ++++           ++   ++  I I  K D
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           + Y+ Y E            EY  +I  S      ++E+ +KI  +     K++P S+
Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSL 378


>gi|317153825|ref|YP_004121873.1| ribosome-associated GTPase EngA [Desulfovibrio aespoeensis Aspo-2]
 gi|316944076|gb|ADU63127.1| ribosome-associated GTPase EngA [Desulfovibrio aespoeensis Aspo-2]
          Length = 497

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 11/125 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G ++ +LG  NAGKSS+ N +   D  IV+D+ GTTRD + +  + +G      DTAG+
Sbjct: 184 RGLRLTMLGRPNAGKSSIINRIIGTDRLIVSDVAGTTRDSIDVTFERQGKRYTFVDTAGV 243

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEI------NSKKEISF--PKNIDFIFIG 326
           R   +I   +EK  + R     + +D+ +L+ +I        K+ I F   +   F+ + 
Sbjct: 244 RRRANIQEHLEKISVIRALKNSKRSDVTILVIDITLGVGRQDKRLIEFLAKEKTPFMVVC 303

Query: 327 TKSDL 331
            K+DL
Sbjct: 304 NKADL 308



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+LFN L +K  AI  D+PG TRD +  +  +      + DT G+
Sbjct: 5   VALVGRPNVGKSTLFNRLLRKSRAITHDLPGVTRDRIYGECQMGDVKFDLVDTGGM 60


>gi|78213545|ref|YP_382324.1| GTP-binding protein EngA [Synechococcus sp. CC9605]
 gi|123577697|sp|Q3AI13|DER_SYNSC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78198004|gb|ABB35769.1| Small GTP-binding protein domain [Synechococcus sp. CC9605]
          Length = 455

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD +   +  E    ++ DTAGIR  
Sbjct: 179 QMAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTSIIRENRPWRLVDTAGIRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  +E +D+ +L+
Sbjct: 239 RSVNYGPEFFGINRSFKAIERSDVCVLV 266



 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|326391582|ref|ZP_08213112.1| ribosome-associated GTPase EngA [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992364|gb|EGD50826.1| ribosome-associated GTPase EngA [Thermoanaerobacter ethanolicus JW
           200]
          Length = 439

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N +  ++  IV++IPGTTRD +      +G    + DTAGIR  
Sbjct: 178 KIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  + R    +E +D+ LL+
Sbjct: 238 SRISESIERYSVLRALAAIERSDICLLM 265



 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 48/182 (26%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-----------------ID 261
           G  + I+G  N GKS+LFN +  K ++IV D PG TRD +                  +D
Sbjct: 3   GAIVSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNAEWLDKKFILVDTGGLD 62

Query: 262 LDLEGYL---VKISDTAGIRETDDIV----EKEGIKRTFLEVEN------ADLILLLKEI 308
            + E  L   V++   A I  +D I+     KEG+     E+ N       ++IL+  ++
Sbjct: 63  PNAEDILFSKVRLQVEAAIDASDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNKV 122

Query: 309 NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           +S KE+  P   DF  +G  + +           IS+  G G+ EL++++        KK
Sbjct: 123 DSFKEMP-PTYYDFFSLGLGNPIP----------ISASNGLGIGELLDEV-------VKK 164

Query: 369 LP 370
           LP
Sbjct: 165 LP 166


>gi|122701343|emb|CAL88061.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303
            ++ KE IK   L+V + +DLIL
Sbjct: 69  ALLSKE-IKALNLKVAQMSDLIL 90


>gi|289811789|ref|ZP_06542418.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 377

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 91  KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 150

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 151 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 186


>gi|222110307|ref|YP_002552571.1| gtp-binding protein enga [Acidovorax ebreus TPSY]
 gi|254783151|sp|B9MFY0|DER_ACIET RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|221729751|gb|ACM32571.1| Miro domain protein [Acidovorax ebreus TPSY]
          Length = 447

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +N  ++ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG
Sbjct: 177 KNVIRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQKFELIDTAG 236

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R    +   +EK  + +T   +E+A+++LLL
Sbjct: 237 LRRKGKVFEAIEKFSVVKTLQAIESANVVLLL 268



 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN L K   AIV D  G TRD
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRD 39


>gi|163842662|ref|YP_001627066.1| GTP-binding protein EngA [Brucella suis ATCC 23445]
 gi|189037139|sp|B0CK66|DER_BRUSI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|163673385|gb|ABY37496.1| small GTP-binding protein domain [Brucella suis ATCC 23445]
          Length = 483

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 24/165 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQLIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326
           E  +D +E     +T   +  AD +L +  I++K  I+ P +  F           + + 
Sbjct: 62  EAANDSLEARMRAQTEAAISEADAVLFV--IDAKAGIT-PADSTFAEAVRRSGKPVVLVA 118

Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
            K++   +    YD           IS+  G+G+ +L + I  +L
Sbjct: 119 NKAEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL 163



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N +  +D  +     G TRD ++ D +  G  +K+ DTAG+R  
Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRK 272

Query: 281 DDIVEK 286
             + EK
Sbjct: 273 ARVQEK 278


>gi|122702541|emb|CAL88460.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S ++I      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGTPKSFNISVSHNRGISALIDAILSALN 167


>gi|15618753|ref|NP_225039.1| GTP-binding protein EngA [Chlamydophila pneumoniae CWL029]
 gi|15836377|ref|NP_300901.1| GTP-binding protein EngA [Chlamydophila pneumoniae J138]
 gi|16752195|ref|NP_445562.1| GTP-binding protein EngA [Chlamydophila pneumoniae AR39]
 gi|33242204|ref|NP_877145.1| GTP-binding protein EngA [Chlamydophila pneumoniae TW-183]
 gi|8134434|sp|Q9Z762|DER_CHLPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|4377159|gb|AAD18982.1| GTPase/GTP-binding protein [Chlamydophila pneumoniae CWL029]
 gi|7189939|gb|AAF38801.1| GTP-binding protein [Chlamydophila pneumoniae AR39]
 gi|8979218|dbj|BAA99052.1| GTPase/GTP-binding protein [Chlamydophila pneumoniae J138]
 gi|33236715|gb|AAP98802.1| GTPase/GTP-binding protein [Chlamydophila pneumoniae TW-183]
          Length = 487

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           KI ILG  N GKSSLFN L K+ +AIV    GTTRD L  +L   G   ++ DT G+   
Sbjct: 3   KIAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGELHAFGVPAQVIDTGGVDHN 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI 308
           ++D  +K    +     + AD++LL+ +I
Sbjct: 63  SEDYFQKHIYNQALTGAKEADVLLLVIDI 91



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSS+ N L  ++  I+ + PGTTRD + I    +       DTAG+R+ 
Sbjct: 226 KIALIGRPNVGKSSIINGLLNEERCIIDNTPGTTRDNIDILYSHKDRQYLFIDTAGLRKM 285

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSK 311
             +   +E     RT   +  AD+ LL+ +   K
Sbjct: 286 KSVKNSIEWISSSRTEKAISRADICLLVIDATQK 319


>gi|122701695|emb|CAL88237.1| GTPase [Helicobacter pylori]
 gi|122701699|emb|CAL88239.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDIKLFREI 110


>gi|167037254|ref|YP_001664832.1| GTP-binding protein EngA [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256752010|ref|ZP_05492879.1| small GTP-binding protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|320115673|ref|YP_004185832.1| ribosome-associated GTPase EngA [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|238687651|sp|B0K8N3|DER_THEP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166856088|gb|ABY94496.1| small GTP-binding protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256749120|gb|EEU62155.1| small GTP-binding protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|319928764|gb|ADV79449.1| ribosome-associated GTPase EngA [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 439

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N +  ++  IV++IPGTTRD +      +G    + DTAGIR  
Sbjct: 178 KIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  + R    +E +D+ LL+
Sbjct: 238 SRISESIERYSVLRALAAIERSDICLLM 265



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 48/182 (26%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-----------------ID 261
           G  + I+G  N GKS+LFN +  K ++IV D PG TRD +                  +D
Sbjct: 3   GAMVSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNVEWLDKKFILVDTGGLD 62

Query: 262 LDLEGYL---VKISDTAGIRETDDIV----EKEGIKRTFLEVEN------ADLILLLKEI 308
            + E  L   V++   A I  +D I+     KEG+     E+ N       ++IL+  ++
Sbjct: 63  PNAEDILFSKVRLQVEAAIDASDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNKV 122

Query: 309 NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           +S KE+  P   DF  +G  + +           IS+  G G+ EL++++        KK
Sbjct: 123 DSFKEMP-PTYYDFFSLGLGNPIP----------ISASNGLGIGELLDEV-------VKK 164

Query: 369 LP 370
           LP
Sbjct: 165 LP 166


>gi|47094517|ref|ZP_00232186.1| GTPase family protein [Listeria monocytogenes str. 4b H7858]
 gi|47017110|gb|EAL07974.1| GTPase family protein [Listeria monocytogenes str. 4b H7858]
          Length = 311

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 8/125 (6%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           L D+L   + + +H  + +  E   +  K  ++G  N GKSS+ NAL  +D  IV+DI G
Sbjct: 27  LGDML---DAVRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAG 83

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEIN 309
           TTRD +      +G    + DTAG+R+   +    EK  + R    +E +D++L++  IN
Sbjct: 84  TTRDAIDTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVV--IN 141

Query: 310 SKKEI 314
           +++ I
Sbjct: 142 AEEGI 146


>gi|317131054|ref|YP_004090368.1| small GTP-binding protein [Ethanoligenens harbinense YUAN-3]
 gi|315469033|gb|ADU25637.1| small GTP-binding protein [Ethanoligenens harbinense YUAN-3]
          Length = 414

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 14/136 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDT 274
           I N   I   G  NAGKSSL NA+A + VA+ +D+PGTT D +   ++ L    V ++DT
Sbjct: 6   IANRTHIAFFGRRNAGKSSLLNAIAGQPVAVTSDVPGTTTDPVHKTMEILPLGPVLLTDT 65

Query: 275 AGIRETDDIVEKEGIK--RTFLEVENADLILLLKEINSKK---EISF-----PKNIDFIF 324
           AG+   DD  E  G++  + + E+   DL +L+ +        E +F      + + F+ 
Sbjct: 66  AGL---DDTGELGGLRVEKAYEELRRTDLAVLVADAADGVGNFETAFIGELRKRRVPFVV 122

Query: 325 IGTKSDLYSTYTEEYD 340
           +  K D ++  T+E D
Sbjct: 123 VLNKCDTHAVSTDELD 138


>gi|296122493|ref|YP_003630271.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776]
 gi|296014833|gb|ADG68072.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776]
          Length = 496

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 31/178 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+  N+LA+ +  IV++IPGTTRD + +  +L+G      DT G+R+ 
Sbjct: 185 KLAIVGRRNVGKSTFVNSLAETERMIVSEIPGTTRDSVDVRFELDGKSFVAIDTPGVRKR 244

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGT 327
             +   +E  G+ R    +  A+++L+    +  + IS          +  +   IF+  
Sbjct: 245 KSLANDIEWYGLARAKRSIRRANVVLMF--FDCTQPISRVDKQLVHEIYEYHKPCIFVVN 302

Query: 328 KSDLYSTYTEEY--DHLISSF--------------TGEGLEELINKIKSILSNKFKKL 369
           K DL+     E   ++L+ +F              TG+ +++LIN  +SI      ++
Sbjct: 303 KWDLHGDQEMEAWNEYLLQNFASMRHVPLAFITGMTGKNVKKLINLAQSIFKQALMRI 360



 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSS+ N LA+K +++V    G TRD +   +       ++ DT GI   
Sbjct: 5   KVAIVGRPNVGKSSILNWLAQKRISVVDPTAGVTRDRVMYLMHEGDRYFELVDTGGIGIV 64

Query: 281 D-DIVEKEGIKRTFLEVENADLILLL 305
           D D +  E   +  + ++ ADLIL +
Sbjct: 65  DVDDLSNEIDYQINVGIQEADLILFV 90


>gi|122700927|emb|CAL88051.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  TLLSKEIKALNLKAAQMSDLIL 90


>gi|114328959|ref|YP_746116.1| GTP-binding protein EngA [Granulibacter bethesdensis CGDNIH1]
 gi|114317133|gb|ABI63193.1| GTP-binding protein [Granulibacter bethesdensis CGDNIH1]
          Length = 483

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 19/176 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + I G  N GKS+LFN L  + +A+V D PG TRD    +  L G LVK+ DTAG+ E  
Sbjct: 22  VAIAGRPNVGKSTLFNRLVGRRMALVADTPGVTRDRKEAEAMLRGRLVKLIDTAGLEEAP 81

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLY 332
            D +     + +   V  ADL++ + +  S     +  F      +N   + +  K++  
Sbjct: 82  QDTIAGRMRQSSETAVSQADLVVFVVDARSGITPADTHFASWLRRQNRPVLLVTNKAEAR 141

Query: 333 STYT---EEY-----DHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  E Y     D L +S+  G G+ +L+ +I   LS    + P  +P  KR 
Sbjct: 142 GAGAEALEAYRLGLGDPLAVSAEHGLGIADLMREIADRLSTDADR-PSDMPKRKRR 196



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  NAGKS+L N L  +D  I    PG TRD +++ L  +   +++ DTAG+R  
Sbjct: 218 KLAIVGRPNAGKSTLLNRLLGEDRVITGPEPGLTRDSISVTLSDDIGEIELVDTAGLRRR 277

Query: 281 ---DDIVEKEGIKRTFLEVENADLILL 304
              D+ +EK  +  +   ++ A++++L
Sbjct: 278 ARIDESLEKMSVSASIEALKMAEIVVL 304


>gi|86158079|ref|YP_464864.1| GTP-binding protein EngA [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774590|gb|ABC81427.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 465

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN LA + VAIV D+PG TRD    D+  EG  V + DT G   E+
Sbjct: 8   VALVGRPNVGKSTLFNRLAGRRVAIVEDVPGVTRDRNYADVIWEGRAVSVVDTGGFEPES 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D +  +  ++  L V+ A +++L+
Sbjct: 68  RDRLMSQVREQAQLAVDEASVVVLV 92



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKS+  NAL  ++  +V+D+PGTTRD +   +  +G    ++DTAGIR  
Sbjct: 197 RLAIVGRPNVGKSTFVNALLGEERFVVSDVPGTTRDAIDSLVAHKGRRFVVTDTAGIRRK 256

Query: 281 DDIVEK 286
             I +K
Sbjct: 257 RSIAQK 262


>gi|242255856|gb|ACS88912.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S +++      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166


>gi|15894988|ref|NP_348337.1| GTP-binding protein EngA [Clostridium acetobutylicum ATCC 824]
 gi|26006729|sp|Q97ID7|DER_CLOAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|15024676|gb|AAK79677.1|AE007680_10 Predicted GTPase [Clostridium acetobutylicum ATCC 824]
 gi|325509125|gb|ADZ20761.1| GTP-binding protein EngA [Clostridium acetobutylicum EA 2018]
          Length = 438

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K V+IV D PG TRD +  + +  G    I DT GI  E 
Sbjct: 6   VTIVGRPNVGKSTLFNKLAGKRVSIVEDTPGVTRDRIYAESEWVGKKFTIIDTGGIEPEN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+  +  ++  + +E +D+I+ +
Sbjct: 66  NDIILTQMRRQAQIAIEMSDVIIFM 90



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           KI  +G  N GKSSL N +  ++  IV+DIPGTTRD +   L+ + G LV I DTAG+R 
Sbjct: 178 KIAFVGKPNVGKSSLTNRILGEERVIVSDIPGTTRDAIDSFLETDFGKLVLI-DTAGLRR 236

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              I   +E+    RT   +E  D+  L+
Sbjct: 237 KSRIKEEIERYSAVRTMAAIERCDVCTLI 265


>gi|284050435|ref|ZP_06380645.1| GTP-binding protein EngA [Arthrospira platensis str. Paraca]
 gi|291569696|dbj|BAI91968.1| GTP-binding protein [Arthrospira platensis NIES-39]
          Length = 453

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N    ++ AIV+ I GTTRD +   ++  G   ++ DTAGIR  
Sbjct: 178 RVAIVGRPNVGKSSLLNTFLGQERAIVSPISGTTRDAIDTIVEHNGNTYRLVDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R F  +  AD++L +
Sbjct: 238 KHVEYGAEFFGINRAFKAIRRADVVLFV 265



 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 30/61 (49%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD        +     + DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLTQTQDAIVHDQPGMTRDRTYRSAYWQDREFIVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|122702619|emb|CAL88499.1| GTPase [Helicobacter pylori]
 gi|122702667|emb|CAL88523.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S +++      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166


>gi|167040606|ref|YP_001663591.1| GTP-binding protein EngA [Thermoanaerobacter sp. X514]
 gi|300914647|ref|ZP_07131963.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X561]
 gi|307724119|ref|YP_003903870.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X513]
 gi|238687595|sp|B0K3E4|DER_THEPX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166854846|gb|ABY93255.1| small GTP-binding protein [Thermoanaerobacter sp. X514]
 gi|300889582|gb|EFK84728.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X561]
 gi|307581180|gb|ADN54579.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X513]
          Length = 439

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N +  ++  IV++IPGTTRD +      +G    + DTAGIR  
Sbjct: 178 KIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  + R    +E +D+ LL+
Sbjct: 238 SRISESIERYSVLRALAAIERSDICLLM 265



 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 48/182 (26%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-----------------ID 261
           G  + I+G  N GKS+LFN +  K ++IV D PG TRD +                  +D
Sbjct: 3   GAMVSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNAEWLDKKFILVDTGGLD 62

Query: 262 LDLEGYL---VKISDTAGIRETDDIV----EKEGIKRTFLEVEN------ADLILLLKEI 308
            + E  L   V++   A I  +D I+     KEG+     E+ N       ++IL+  ++
Sbjct: 63  PNAEDILFSKVRLQVEAAIDTSDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNKV 122

Query: 309 NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           +S KE+  P   DF  +G  + +           IS+  G G+ EL++++        K+
Sbjct: 123 DSFKEMP-PTYYDFFSLGLGNPIP----------ISASNGLGIGELLDEV-------VKR 164

Query: 369 LP 370
           LP
Sbjct: 165 LP 166


>gi|326336190|ref|ZP_08202362.1| ribosome-associated GTPase EngA [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325691699|gb|EGD33666.1| ribosome-associated GTPase EngA [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 434

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  ++  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDAIDTRYNRFGFEFNLVDTAGIRRK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E++D+ LLL
Sbjct: 236 AKVKEDLEFYSVMRSVRAIEHSDVCLLL 263



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  I G TRD      D  G    + DT G +   
Sbjct: 5   VAIVGRPNVGKSTFFNRLVQRREAIVDSISGVTRDRHYGKTDWNGRDFSVIDTGGYVAGG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD+ +KE  K+  L +E AD I+ L ++ S
Sbjct: 65  DDVFQKEIDKQVNLAIEEADAIIFLTDVES 94


>gi|260434834|ref|ZP_05788804.1| ribosome-associated GTPase EngA [Synechococcus sp. WH 8109]
 gi|260412708|gb|EEX06004.1| ribosome-associated GTPase EngA [Synechococcus sp. WH 8109]
          Length = 455

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD +   +  E    ++ DTAGIR  
Sbjct: 179 QMAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTSIIRENRPWRLVDTAGIRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  +E +D+ +L+
Sbjct: 239 RSVNYGPEFFGINRSFKAIERSDVCVLV 266



 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|122702657|emb|CAL88518.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S ++I      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVLN 167


>gi|122701635|emb|CAL88207.1| GTPase [Helicobacter pylori]
 gi|122701665|emb|CAL88222.1| GTPase [Helicobacter pylori]
 gi|122701667|emb|CAL88223.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKITLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700903|emb|CAL88040.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|329943260|ref|ZP_08292034.1| small GTP-binding domain protein [Chlamydophila psittaci Cal10]
 gi|332287839|ref|YP_004422740.1| ribosome-associated GTPase [Chlamydophila psittaci 6BC]
 gi|313848411|emb|CBY17415.1| putative GTP-binding protein [Chlamydophila psittaci RD1]
 gi|325506575|gb|ADZ18213.1| ribosome-associated GTPase [Chlamydophila psittaci 6BC]
 gi|328814807|gb|EGF84797.1| small GTP-binding domain protein [Chlamydophila psittaci Cal10]
 gi|328915100|gb|AEB55933.1| GTP-binding protein engA [Chlamydophila psittaci 6BC]
          Length = 474

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 1/89 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           +I ILG  N GKSSLFN + K+ +AIV    GTTRD L  ++   G  V++ DT G+ ++
Sbjct: 3   RIAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWGIPVQVIDTGGVDKD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI 308
           ++D  +K   K+       AD++LL+ +I
Sbjct: 63  SEDHFQKHIYKQALAGANEADILLLVIDI 91



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSS+ NAL  ++  I+ +IPGTTRD + I            DTAG+R+ 
Sbjct: 213 KIALIGRPNVGKSSIINALLNEERCIIDNIPGTTRDNIDILYSYNDRSYLFIDTAGLRKM 272

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E     RT   +  AD+ LL+
Sbjct: 273 KSVKNSIEWISSSRTEKAIARADICLLV 300


>gi|254701190|ref|ZP_05163018.1| GTP-binding protein EngA [Brucella suis bv. 5 str. 513]
 gi|261751727|ref|ZP_05995436.1| GTP-binding protein engA [Brucella suis bv. 5 str. 513]
 gi|261741480|gb|EEY29406.1| GTP-binding protein engA [Brucella suis bv. 5 str. 513]
          Length = 483

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 24/165 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326
           E  +D +E     +T   +  AD +L +  I++K  I+ P +  F           + + 
Sbjct: 62  EAANDSLEARMRAQTEAAISEADAVLFV--IDAKAGIT-PADSTFAEAVRRSGKPVVLVA 118

Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
            K++   +    YD           IS+  G+G+ +L + I   L
Sbjct: 119 NKAEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVEFL 163



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N +  +D  +     G TRD ++ D +  G  +K+ DTAG+R  
Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRK 272

Query: 281 DDIVEK 286
             + EK
Sbjct: 273 ARVQEK 278


>gi|160946385|ref|ZP_02093594.1| hypothetical protein PEPMIC_00345 [Parvimonas micra ATCC 33270]
 gi|158447501|gb|EDP24496.1| hypothetical protein PEPMIC_00345 [Parvimonas micra ATCC 33270]
          Length = 441

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N +  ++  IV+DI GTTRD +   ++++G     +DTAG+R  
Sbjct: 178 KIALIGKPNVGKSSLMNRILGEERMIVSDIAGTTRDSIDSRVEIDGKTYIFTDTAGLRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
            +I   +E+  + RT   VE +D+ +LL
Sbjct: 238 RNITENLERYSVVRTLNAVERSDIAILL 265



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 19/164 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  K +AI  D PG TRD L  D + +     + DT G+   +
Sbjct: 6   VCVVGRPNVGKSTLFNKLINKRIAITEDTPGVTRDRLYQDAEWQNKHFILCDTGGLEPNS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           DDI+ ++   +  + +ENAD+IL + +     ++  +EIS          +    K D +
Sbjct: 66  DDIILQKIKAQADVAMENADVILFVVDGKSGLMDEDREISNYLRRTKKPVVLAVNKVDTH 125

Query: 333 STYTEEYD---------HLISSFTGEGLEELINK-IKSILSNKF 366
               E Y+         ++IS+  G GL +L+++ IK    NK+
Sbjct: 126 KMPAEVYEFYELGFENLNIISATQGFGLGDLLDEIIKEFPENKY 169


>gi|122702649|emb|CAL88514.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S +++      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVLN 167


>gi|122701453|emb|CAL88116.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122702237|emb|CAL88309.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|325289812|ref|YP_004265993.1| GTP-binding protein engA [Syntrophobotulus glycolicus DSM 8271]
 gi|324965213|gb|ADY55992.1| GTP-binding protein engA [Syntrophobotulus glycolicus DSM 8271]
          Length = 443

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N +  ++  IV+DI GTTRD +      E     + DTAGIR  
Sbjct: 180 KIAVIGRPNVGKSSLVNKMVGEERVIVSDIAGTTRDAIDTPFRFEDRDYVLIDTAGIRRR 239

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I    E   + R+F  ++ AD++L++
Sbjct: 240 KKIAELTENYSVIRSFRAIDRADVVLMM 267



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV + PG TRD L  +         + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTLFNRVVGRMIAIVENTPGVTRDRLYFEAQWLNRNFTLIDTGGIEFKD 65

Query: 282 DIVEKEGIKRTFLE--VENADLILLL 305
                  + +   E  VE AD+++ +
Sbjct: 66  QSTPLSSLMKQQAEIAVEEADVVVFV 91


>gi|317452835|emb|CBL87853.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|260591202|ref|ZP_05856660.1| ribosome-associated GTPase EngA [Prevotella veroralis F0319]
 gi|260537067|gb|EEX19684.1| ribosome-associated GTPase EngA [Prevotella veroralis F0319]
          Length = 437

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +       G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRK 236

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
           + + E      + R+   +ENAD+ +L+
Sbjct: 237 NKVTEDLEFYSVMRSIRSIENADVCILM 264



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DD+ E    K+  +  E ADL+L L
Sbjct: 65  DDVFEDAIRKQVLVATEEADLVLFL 89


>gi|122701599|emb|CAL88189.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122700777|emb|CAL87977.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI++D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAIISDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|284116005|ref|ZP_06386701.1| GTP-binding protein engA [Candidatus Poribacteria sp. WGA-A3]
 gi|283829542|gb|EFC33894.1| GTP-binding protein engA [Candidatus Poribacteria sp. WGA-A3]
          Length = 435

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKS+L N +  ++ A+V+D+PGTTRD +   L+ EG    ++DTAG+R  
Sbjct: 176 RVAMVGRPNVGKSTLVNTILGEERAVVSDVPGTTRDPIDTHLEREGRTFLLTDTAGLRRR 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + RT   +  +D+ +LL
Sbjct: 236 GRVEPGIEGYSVARTMRALGRSDIGVLL 263



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           + ++G  N GKS+LFN +     AIV D PG TRD +  +   +G   ++ DT G+    
Sbjct: 4   VAVIGRPNVGKSTLFNRILGTRNAIVDDRPGVTRDRIYAECTYQGRRFQVVDTGGLDPTS 63

Query: 280 TDDIV 284
           TDD++
Sbjct: 64  TDDML 68


>gi|149926362|ref|ZP_01914623.1| GTP-binding protein EngA [Limnobacter sp. MED105]
 gi|149824725|gb|EDM83939.1| GTP-binding protein EngA [Limnobacter sp. MED105]
          Length = 441

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I G  N GKS++ N L  ++  I  D+PGTTRD + ID +       + DTAG+R+ 
Sbjct: 177 KVAIAGRPNVGKSTMVNTLLGEERVIAFDLPGTTRDSIYIDFERNDKPYTLIDTAGLRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A++++L+  ++++++IS
Sbjct: 237 GKVFESVEKFSVIKTLQAIEDANVVILM--LDAQQDIS 272



 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           I ++G  N GKS+LFN L +   A+V + PG TRD       +    YLV   DT G+  
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVANQPGLTRDRHYGVGRIGPREYLV--VDTGGLEP 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
              D +  E  K++   +  +DL+L L
Sbjct: 63  VAKDGIYAEMAKQSRQAIVESDLVLFL 89


>gi|122702189|emb|CAL88285.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303
            ++ KE IK   L+V + +DLIL
Sbjct: 69  ALLSKE-IKALNLKVAQMSDLIL 90


>gi|122700895|emb|CAL88036.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|22298421|ref|NP_681668.1| GTP-binding protein EngA [Thermosynechococcus elongatus BP-1]
 gi|34222551|sp|Q8DKI1|DER_THEEB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|22294600|dbj|BAC08430.1| GTP-binding protein [Thermosynechococcus elongatus BP-1]
          Length = 449

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 7/100 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I G  N GKSSL NAL   D AIV+ I GTTRD +   ++  G   +  DTAGIR+ 
Sbjct: 178 QVAIAGRPNVGKSSLLNALIGSDRAIVSPISGTTRDAIDTVIEHGGTQYRFIDTAGIRKR 237

Query: 281 DDIV---EKEGIKRTFLEVENADLILL----LKEINSKKE 313
             +    E   + R F  +  +D++LL    L+EI  + +
Sbjct: 238 THVAYGPEMFSVHRAFKAIHRSDVVLLVLDALEEITEQDQ 277



 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + ++G  N GKS+  N LA +  AIV D PG TRD
Sbjct: 6   VAVVGRPNVGKSTFVNRLAGERDAIVHDEPGVTRD 40


>gi|292806602|gb|ADE42431.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|301632619|ref|XP_002945379.1| PREDICTED: hypothetical protein LOC100487340 [Xenopus (Silurana)
           tropicalis]
          Length = 937

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ + G  N GKS+L N    ++  +  D+PGTTRD +++  + +G   ++ DTAG+R  
Sbjct: 190 KLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFERQGQKFELIDTAGLRRK 249

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +E+A+++LLL
Sbjct: 250 GRVFEAIEKFSVVKTLQAIESANVVLLL 277



 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 8/107 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAG- 276
           + I ++G++NAGKS+LFNAL K   A   D    T D  T  L L+  G  V +SDT G 
Sbjct: 747 FNISLVGYTNAGKSTLFNALVKAR-AYAADQLFATLDTTTRQLYLQDAGRSVSLSDTVGF 805

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           IR+    +  +  + T  E  +ADL+L    +       FP+ I  +
Sbjct: 806 IRDLPHGL-VDAFQATLQEAVDADLLL---HVVDAANPHFPEQIQQV 848



 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L +   AIV D  G TRD    +     +   + DT G   + 
Sbjct: 12  IALVGRPNVGKSTLFNRLTRSRDAIVADFAGLTRDRHYGNGRQGKHAYIVIDTGGFEPDA 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              + +E  K+T   V  +D++L +  ++++  +S
Sbjct: 72  SSGIFREMAKQTRQAVAESDVVLFV--VDARAGVS 104


>gi|217034119|ref|ZP_03439539.1| hypothetical protein HP9810_868g12 [Helicobacter pylori 98-10]
 gi|216943403|gb|EEC22859.1| hypothetical protein HP9810_868g12 [Helicobacter pylori 98-10]
          Length = 461

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINS 310
             I  +EK  ++RT   +E + ++LL+ ++++
Sbjct: 261 GKILGIEKYALERTQKALEKSHIVLLVLDVSA 292


>gi|122702519|emb|CAL88449.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|99905853|gb|ABF68621.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303
            ++ KE IK   L+V + +DLIL
Sbjct: 69  ALLSKE-IKALNLKVAQMSDLIL 90


>gi|33865191|ref|NP_896750.1| GTP-binding protein EngA [Synechococcus sp. WH 8102]
 gi|41017009|sp|Q7U8G2|DER_SYNPX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|33638875|emb|CAE07172.1| putative GTP-binding protein [Synechococcus sp. WH 8102]
          Length = 455

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD +  ++  E    ++ DTAGIR  
Sbjct: 179 QMAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTNIVRENRPWRLVDTAGIRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  ++ +D+ +L+
Sbjct: 239 RSVNYGPEYFGINRSFKAIDRSDVCVLV 266



 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|317178805|dbj|BAJ56593.1| GTP-binding protein EngA [Helicobacter pylori F30]
          Length = 461

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTTDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINS 310
             I  +EK  ++RT   +E + + LL+ ++++
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSA 292


>gi|308062155|gb|ADO04043.1| GTP-binding protein EngA [Helicobacter pylori Cuz20]
          Length = 461

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 25/178 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             I  +EK  ++RT   +E + + LL+ ++++           ++   ++  I I  K D
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           + Y+ Y E            EY  +I  S      ++E+ +KI  +     K++P S+
Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSL 378


>gi|292806538|gb|ADE42399.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAREKIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|261837935|gb|ACX97701.1| GTP-binding protein [Helicobacter pylori 51]
          Length = 461

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINS 310
             I  +EK  ++RT   +E + + LL+ ++++
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSA 292


>gi|225028014|ref|ZP_03717206.1| hypothetical protein EUBHAL_02283 [Eubacterium hallii DSM 3353]
 gi|224954728|gb|EEG35937.1| hypothetical protein EUBHAL_02283 [Eubacterium hallii DSM 3353]
          Length = 445

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFNALA   ++IV D PG TRD +  ++    Y   + DT GI  E+
Sbjct: 10  VAVVGRPNVGKSTLFNALAGSRISIVEDTPGVTRDRIYAEVSWLDYQFTLIDTGGIEPES 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DDI+     ++    +  AD+IL L ++  
Sbjct: 70  DDIIISRMREQAETAIMTADVILFLVDVRQ 99



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  NAGKSS+ N L  ++  IV+ + GTTRD +   +   G      DTAG+R  
Sbjct: 184 KIAVIGKPNAGKSSIINKLLGEERVIVSPVAGTTRDAIDTTVKRNGQEYVFIDTAGLRRK 243

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  I RT   VE  D+ +L+
Sbjct: 244 SKIKEELERYSIIRTVTAVERCDVAVLI 271


>gi|188527319|ref|YP_001910006.1| GTP-binding protein EngA [Helicobacter pylori Shi470]
 gi|238691915|sp|B2USZ4|DER_HELPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|188143559|gb|ACD47976.1| GTP-binding protein EngA [Helicobacter pylori Shi470]
          Length = 461

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINS 310
             I  +EK  ++RT   +E + + LL+ ++++
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSA 292


>gi|152991112|ref|YP_001356834.1| GTP-binding protein EngA [Nitratiruptor sp. SB155-2]
 gi|166225831|sp|A6Q4R8|DER_NITSB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|151422973|dbj|BAF70477.1| GTP-binding protein, Era/ThdF family [Nitratiruptor sp. SB155-2]
          Length = 462

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 2/101 (1%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           I++G+  +   N   + ILG  N GKSSL NAL K++ +IV+D+ GTT D +        
Sbjct: 182 INEGEKKQEESNEINVAILGRVNVGKSSLLNALLKEERSIVSDVAGTTIDTIDESTIYND 241

Query: 267 YLVKISDTAGIRETDDIV--EKEGIKRTFLEVENADLILLL 305
            ++   DTAGIR    IV  EK  + RT   +E AD+ LL+
Sbjct: 242 KVITFIDTAGIRRRGKIVGIEKYALNRTQKMLERADVALLV 282



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 3/86 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSLFN + K+  AIV++  GTTRDV    + +     +I DT GI + 
Sbjct: 3   KIAIIGKPNVGKSSLFNRILKQRDAIVSETEGTTRDVKRRIVQIGEKEAEILDTGGIEDR 62

Query: 281 DDIVEKEGIKRTFLE-VENADLILLL 305
           +++ EK  +K+  LE  ++AD+IL +
Sbjct: 63  NELFEK--VKQKSLEAAKDADIILYM 86


>gi|122701547|emb|CAL88163.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122702223|emb|CAL88302.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700871|emb|CAL88024.1| GTPase [Helicobacter pylori]
 gi|122701701|emb|CAL88240.1| GTPase [Helicobacter pylori]
 gi|122701719|emb|CAL88249.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|315586500|gb|ADU40881.1| ribosome-associated GTPase EngA [Helicobacter pylori 35A]
          Length = 461

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINS 310
             I  +EK  ++RT   +E + + LL+ ++++
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSA 292


>gi|292806622|gb|ADE42441.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806524|gb|ADE42392.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|292806490|gb|ADE42375.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806478|gb|ADE42369.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806508|gb|ADE42384.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|208434748|ref|YP_002266414.1| GTP-binding protein-like protein [Helicobacter pylori G27]
 gi|238058976|sp|B5Z7J9|DER_HELPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|208432677|gb|ACI27548.1| GTP-binding protein-like protein [Helicobacter pylori G27]
          Length = 460

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 4/98 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISF 316
            ++ KE         + +DLIL +   K I S ++I  
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKL 107



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 6/99 (6%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EII+ G    I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   D
Sbjct: 197 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVD 252

Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310
           TAGIR    I  +EK  ++RT   +E + + LL+ ++++
Sbjct: 253 TAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSA 291


>gi|122701575|emb|CAL88177.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701391|emb|CAL88085.1| GTPase [Helicobacter pylori]
 gi|122701439|emb|CAL88109.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|99905867|gb|ABF68628.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806554|gb|ADE42407.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806556|gb|ADE42408.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|300770935|ref|ZP_07080812.1| ribosome-associated GTPase EngA [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300762208|gb|EFK59027.1| ribosome-associated GTPase EngA [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 441

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  I+G  N GKSSL NAL  KD  IVT + GTTRD + I  +  G+   + DTAG+R  
Sbjct: 183 KYTIVGRPNVGKSSLTNALLGKDRNIVTPVAGTTRDSIRIHYNQFGHEFLLIDTAGMRRK 242

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + RT   +E++D+++L+
Sbjct: 243 SKVNEDIEFYSVMRTIKALEDSDVVILM 270



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV D  G TRD      +  G    + DT G +  +
Sbjct: 13  VAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYESAEWIGKKFTVIDTGGFVHGS 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD+ E+    + ++ +E A +I+ + ++ +
Sbjct: 73  DDVFEEAIRDQVYIAIEEASVIIFMVDVTT 102


>gi|195954217|gb|ACG58814.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  XLLSKEIKALNLKAAQMSDLIL 90


>gi|122702845|emb|CAL88612.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S ++I      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122701567|emb|CAL88173.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701527|emb|CAL88153.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700677|emb|CAL87927.1| GTPase [Helicobacter pylori]
 gi|122701411|emb|CAL88095.1| GTPase [Helicobacter pylori]
 gi|122701429|emb|CAL88104.1| GTPase [Helicobacter pylori]
 gi|122701497|emb|CAL88138.1| GTPase [Helicobacter pylori]
 gi|122701601|emb|CAL88190.1| GTPase [Helicobacter pylori]
 gi|122702695|emb|CAL88537.1| GTPase [Helicobacter pylori]
 gi|122702873|emb|CAL88626.1| GTPase [Helicobacter pylori]
 gi|242255826|gb|ACS88897.1| GTPase [Helicobacter pylori]
 gi|242255930|gb|ACS88949.1| GTPase [Helicobacter pylori]
 gi|292806510|gb|ADE42385.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806520|gb|ADE42390.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806586|gb|ADE42423.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806646|gb|ADE42453.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700669|emb|CAL87923.1| GTPase [Helicobacter pylori]
 gi|122700699|emb|CAL87938.1| GTPase [Helicobacter pylori]
 gi|122701361|emb|CAL88070.1| GTPase [Helicobacter pylori]
 gi|122701505|emb|CAL88142.1| GTPase [Helicobacter pylori]
 gi|122701511|emb|CAL88145.1| GTPase [Helicobacter pylori]
 gi|122701515|emb|CAL88147.1| GTPase [Helicobacter pylori]
 gi|122701559|emb|CAL88169.1| GTPase [Helicobacter pylori]
 gi|122702591|emb|CAL88485.1| GTPase [Helicobacter pylori]
 gi|122702615|emb|CAL88497.1| GTPase [Helicobacter pylori]
 gi|122702665|emb|CAL88522.1| GTPase [Helicobacter pylori]
 gi|122702867|emb|CAL88623.1| GTPase [Helicobacter pylori]
 gi|122702875|emb|CAL88627.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|99905871|gb|ABF68630.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|317014244|gb|ADU81680.1| GTP-binding protein Der [Helicobacter pylori Gambia94/24]
          Length = 463

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 4/98 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISF 316
            ++ KE         + +DLIL +   K I S ++I  
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKL 107



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 25/177 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 203 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 262

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             I  +EK  ++RT   +E + + LL+ ++++           ++   ++  I I  K D
Sbjct: 263 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 322

Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           + Y+ Y E            EY  +I  S      ++E+ +KI  +     K++P S
Sbjct: 323 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHMDEIKHKIIEVYECFSKRIPTS 379


>gi|292806452|gb|ADE42356.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  TLLSKEIKALNLKAAQMSDLIL 90


>gi|228470615|ref|ZP_04055472.1| ribosome-associated GTPase EngA [Porphyromonas uenonis 60-3]
 gi|228307742|gb|EEK16718.1| ribosome-associated GTPase EngA [Porphyromonas uenonis 60-3]
          Length = 436

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIVTD  GTTRD     +        I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTRSRQAIVTDEAGTTRDRQYGHVTWCERTFSIVDTGGWVLRS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF---PKNIDFIFIGTKSDLY 332
           DD+ E+E  K+  + VE ADLIL + +I     +   EI+      +   I +  K+D +
Sbjct: 65  DDVFEEEINKQVRIAVEEADLILFVVDILNGVTDLDDEIALMLRQTSKPVILVANKADNF 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + + +  +         H IS+  G    +L++ I  +L  +    P 
Sbjct: 125 TQHNDAAEFYSLGLGDPHPISAINGSSTGDLLDHILGLLPKEGNHEPL 172



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  I+G  NAGKSSL NAL  ++  IVTD  GTTRD +  + D       + DTAGIR+ 
Sbjct: 177 RFAIVGRPNAGKSSLLNALIGEERNIVTDRSGTTRDSIFAEYDKYNQHFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    +ENAD+ ++L
Sbjct: 237 GKVNEDLEYYSVIRAIRAIENADVCIML 264


>gi|242309125|ref|ZP_04808280.1| GTP-binding protein engA [Helicobacter pullorum MIT 98-5489]
 gi|239524166|gb|EEQ64032.1| GTP-binding protein engA [Helicobacter pullorum MIT 98-5489]
          Length = 461

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKSSLFN   K  +AI +++ GTTRDV   ++ +      + DT GI ++D
Sbjct: 8   IAIMGRPNAGKSSLFNRFCKSRIAITSEVAGTTRDVKKANILILDTPFLLLDTGGIDQSD 67

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            +  K   + + L  ENADLIL L
Sbjct: 68  SLFAKVS-EHSHLAGENADLILYL 90



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSL NAL K++ ++V+++ GTT D +    ++EG  V   DTAGIR   
Sbjct: 200 IGIIGRVNVGKSSLLNALLKQERSVVSEVAGTTIDPVDEKGEIEGRRVNFVDTAGIRRRG 259

Query: 282 DI--VEKEGIKRTFLEVENADLILLL 305
            I  +EK  + RT   ++  D+++L+
Sbjct: 260 KIEGLEKFALNRTREVLKRTDIVILV 285


>gi|122701393|emb|CAL88086.1| GTPase [Helicobacter pylori]
 gi|122702681|emb|CAL88530.1| GTPase [Helicobacter pylori]
 gi|242255958|gb|ACS88963.1| GTPase [Helicobacter pylori]
 gi|242255960|gb|ACS88964.1| GTPase [Helicobacter pylori]
 gi|292806426|gb|ADE42343.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|122701449|emb|CAL88114.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701487|emb|CAL88133.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702311|emb|CAL88346.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122701593|emb|CAL88186.1| GTPase [Helicobacter pylori]
 gi|122702727|emb|CAL88553.1| GTPase [Helicobacter pylori]
 gi|242255950|gb|ACS88959.1| GTPase [Helicobacter pylori]
 gi|292806416|gb|ADE42338.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700707|emb|CAL87942.1| GTPase [Helicobacter pylori]
 gi|122700725|emb|CAL87951.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|17826782|emb|CAD18957.1| GTP-binding protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|16761434|ref|NP_457051.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140869|ref|NP_804211.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213161952|ref|ZP_03347662.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425335|ref|ZP_03358085.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213609480|ref|ZP_03369306.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213861384|ref|ZP_03385854.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289825430|ref|ZP_06544667.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|26006725|sp|Q8Z4P6|DER_SALTI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|25328266|pir||AF0821 probable GTP-binding protein STY2764 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503734|emb|CAD02722.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136494|gb|AAO68060.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 490

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|332673360|gb|AEE70177.1| ribosome-associated GTPase EngA [Helicobacter pylori 83]
          Length = 460

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 24/146 (16%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
           ++   IE DLD    E ++N + KE   +                  E+I+ G    I+G
Sbjct: 168 NLNQIIEQDLDADILESLENNAPKEETKE------------------EVIQVG----IIG 205

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--V 284
             N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR    I  +
Sbjct: 206 RVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRGKILGI 265

Query: 285 EKEGIKRTFLEVENADLILLLKEINS 310
           EK  ++RT   +E + + LL+ ++++
Sbjct: 266 EKYALERTQKALEKSHIALLVLDVST 291


>gi|292806576|gb|ADE42418.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702595|emb|CAL88487.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122701671|emb|CAL88225.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|122701603|emb|CAL88191.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701345|emb|CAL88062.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122702129|emb|CAL88255.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701641|emb|CAL88210.1| GTPase [Helicobacter pylori]
 gi|122702203|emb|CAL88292.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702131|emb|CAL88256.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|93004282|gb|ABE97061.1| YphC [Helicobacter pylori]
 gi|122701353|emb|CAL88066.1| GTPase [Helicobacter pylori]
 gi|122701445|emb|CAL88112.1| GTPase [Helicobacter pylori]
 gi|317452817|emb|CBL87844.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|317453541|emb|CBL87880.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|4467655|emb|CAB37779.1| GTP-binding protein homologue [Helicobacter pylori]
 gi|122701539|emb|CAL88159.1| GTPase [Helicobacter pylori]
 gi|242255860|gb|ACS88914.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|305666364|ref|YP_003862651.1| GTP-binding protein EngA [Maribacter sp. HTCC2170]
 gi|88708356|gb|EAR00593.1| GTP-binding protein EngA [Maribacter sp. HTCC2170]
          Length = 496

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  ++  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 237 RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDTKYNRFGFEFNLVDTAGIRRK 296

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E++D+ LLL
Sbjct: 297 SKVKEDLEFYSVMRSVRAIEHSDVCLLL 324



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 1/108 (0%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           SS+I+        R    + I+G  N GKS+ FN L ++  AIV  + G TRD      D
Sbjct: 49  SSNINGTFAANYSRMSAIVAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSD 108

Query: 264 LEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             G    I DT G +  +DDI E+E  K+  L +E AD ++ + ++ +
Sbjct: 109 WNGKEFSIIDTGGYVVGSDDIFEQEIDKQVELAIEEADALIFMVDVET 156


>gi|317453537|emb|CBL87878.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S ++I      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|292806500|gb|ADE42380.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|325681451|ref|ZP_08160977.1| ribosome biogenesis GTPase Der [Ruminococcus albus 8]
 gi|324106941|gb|EGC01231.1| ribosome biogenesis GTPase Der [Ruminococcus albus 8]
          Length = 443

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 5/89 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           K+ ++G  N GKSSL N +  ++  IV+DI GTTRD    D++ E G  V I DTAGIR 
Sbjct: 179 KVAVIGKPNVGKSSLINRICGEERVIVSDIAGTTRDATDTDIENEFGKFVFI-DTAGIRR 237

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +   VEK  + R ++ V+ AD+ +++
Sbjct: 238 KSKVLETVEKYSVLRAYMAVDRADVAVIV 266



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + ++IV D PG TRD +    +  G    + DT GI  E+
Sbjct: 6   VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYGKCEWLGREFMLVDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DDI+  +  +++ L + +A++I+L+ +I S
Sbjct: 66  DDIILSQMRRQSELAITSANVIILVTDIKS 95


>gi|242255888|gb|ACS88928.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122702849|emb|CAL88614.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  TLLSKEIKALNLKAAQMSDLIL 90


>gi|122702545|emb|CAL88462.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|122702879|emb|CAL88629.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  TLLSKEIKALNLKAAQMSDLIL 90


>gi|122701589|emb|CAL88184.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122701523|emb|CAL88151.1| GTPase [Helicobacter pylori]
 gi|122701525|emb|CAL88152.1| GTPase [Helicobacter pylori]
 gi|122701531|emb|CAL88155.1| GTPase [Helicobacter pylori]
 gi|122702611|emb|CAL88495.1| GTPase [Helicobacter pylori]
 gi|122702773|emb|CAL88576.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700639|emb|CAL87908.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700683|emb|CAL87930.1| GTPase [Helicobacter pylori]
 gi|122702235|emb|CAL88308.1| GTPase [Helicobacter pylori]
 gi|122702661|emb|CAL88520.1| GTPase [Helicobacter pylori]
 gi|242255832|gb|ACS88900.1| GTPase [Helicobacter pylori]
 gi|242255862|gb|ACS88915.1| GTPase [Helicobacter pylori]
 gi|242255864|gb|ACS88916.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|119897222|ref|YP_932435.1| GTP-binding protein EngA [Azoarcus sp. BH72]
 gi|166224303|sp|A1K3Z3|DER_AZOSB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|119669635|emb|CAL93548.1| probable GTP-binding protein [Azoarcus sp. BH72]
          Length = 442

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 59/100 (59%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N L  ++  I  D+PGTTRD + I  +  G    + DTAG+R
Sbjct: 176 GPRVAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDAIAIPFERGGKQYTLIDTAGLR 235

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   VEK  + +T   ++ A++++L+  +++ ++IS
Sbjct: 236 RRGKVFEAVEKFSVIKTLQAIQEANVVVLV--LDAAQDIS 273



 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 48/94 (51%), Gaps = 19/94 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-----LTIDLDLEGYLVKISDTAG 276
           IV++G  N GKS+LFN L K   A+V D PG TRD         D D   YLV   DTAG
Sbjct: 5   IVLVGRPNVGKSTLFNRLTKTRDALVADQPGLTRDRHYGVGRVGDRD---YLV--VDTAG 59

Query: 277 IRETDDIVEKEGI-----KRTFLEVENADLILLL 305
                D V K+GI     ++    +  AD++L L
Sbjct: 60  F----DPVAKDGIMHEMARQAEQAIAEADVLLFL 89


>gi|99905879|gb|ABF68634.1| YphC [Helicobacter pylori]
 gi|122702729|emb|CAL88554.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|292806688|gb|ADE42474.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806542|gb|ADE42401.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|289677942|ref|ZP_06498832.1| GTP-binding protein EngA [Pseudomonas syringae pv. syringae FF5]
          Length = 391

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309
           +R+   I   VEK  + +T   +++A++++ + +                          
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
            +K +   P   DF+ I  +  L+  + +  D H IS+  G G+  L   +++   +   
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISALHGTGVGNLYQSVQNSFKSAVT 370

Query: 368 KLPFS 372
           + P S
Sbjct: 371 RWPTS 375



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD++L L
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFL 88


>gi|242255948|gb|ACS88958.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122702463|emb|CAL88422.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702871|emb|CAL88625.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702127|emb|CAL88254.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700805|emb|CAL87991.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|18075603|emb|CAD11197.1| GTP-binding protein [Helicobacter pylori]
 gi|122700743|emb|CAL87960.1| GTPase [Helicobacter pylori]
 gi|122700913|emb|CAL88045.1| GTPase [Helicobacter pylori]
 gi|122702779|emb|CAL88579.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|77460818|ref|YP_350325.1| GTP-binding protein EngA [Pseudomonas fluorescens Pf0-1]
 gi|123603396|sp|Q3K7C0|DER_PSEPF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|77384821|gb|ABA76334.1| GTP-binding protein [Pseudomonas fluorescens Pf0-1]
          Length = 490

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNDEKYTLIDTAG 252

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309
           +R+   I   VEK  + +T   +++A++++ + +                          
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
            +K +   P   DF+ +  +  L+  + +  D H IS+  G G+  L   +++   +   
Sbjct: 313 INKWDGMTPSERDFVKVELQRRLF--FVDFADIHFISALHGTGVGNLYASVQNSFKSAVT 370

Query: 368 KLPFS 372
           + P S
Sbjct: 371 RWPTS 375



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD++L L
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFL 88


>gi|16765839|ref|NP_461454.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56412602|ref|YP_149677.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|167549461|ref|ZP_02343220.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167991827|ref|ZP_02572926.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168261443|ref|ZP_02683416.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168466731|ref|ZP_02700585.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194446079|ref|YP_002041777.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|197264629|ref|ZP_03164703.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197361537|ref|YP_002141173.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|238912639|ref|ZP_04656476.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|17865704|sp|Q9XCI8|DER_SALTY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|81821610|sp|Q5PNI6|DER_SALPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238689919|sp|B5BAY9|DER_SALPK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238693574|sp|B4T0P5|DER_SALNS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|16421063|gb|AAL21413.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56126859|gb|AAV76365.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194404742|gb|ACF64964.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|195630729|gb|EDX49321.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093013|emb|CAR58446.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197242884|gb|EDY25504.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205325405|gb|EDZ13244.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205329876|gb|EDZ16640.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205349650|gb|EDZ36281.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|261247715|emb|CBG25543.1| GTP-binding protein engA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994635|gb|ACY89520.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159068|emb|CBW18582.1| GTP-binding protein engA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913506|dbj|BAJ37480.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320087014|emb|CBY96783.1| GTP-binding protein engA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222780|gb|EFX47851.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613736|gb|EFY10675.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619521|gb|EFY16397.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625026|gb|EFY21855.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629531|gb|EFY26307.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634038|gb|EFY30775.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635524|gb|EFY32235.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639800|gb|EFY36479.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644422|gb|EFY40963.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648567|gb|EFY45016.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655213|gb|EFY51522.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658260|gb|EFY54526.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664261|gb|EFY60458.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669428|gb|EFY65577.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673155|gb|EFY69261.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676547|gb|EFY72615.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683297|gb|EFY79311.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685817|gb|EFY81810.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323130847|gb|ADX18277.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194760|gb|EFZ79948.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199552|gb|EFZ84643.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204673|gb|EFZ89671.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208121|gb|EFZ93066.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210155|gb|EFZ95056.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217023|gb|EGA01745.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221821|gb|EGA06225.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225000|gb|EGA09255.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229289|gb|EGA13413.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235396|gb|EGA19480.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237418|gb|EGA21481.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245172|gb|EGA29173.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248875|gb|EGA32801.1| GTP-binding protein Der [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253162|gb|EGA36994.1| GTP-binding protein Der [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255396|gb|EGA39164.1| GTP-binding protein Der [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263529|gb|EGA47056.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266356|gb|EGA49844.1| GTP-binding protein Der [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269813|gb|EGA53263.1| GTP-binding protein Der [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|332989446|gb|AEF08429.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 490

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|317180598|dbj|BAJ58384.1| GTP-binding protein EngA [Helicobacter pylori F32]
          Length = 459

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 25/178 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             I  +EK  ++RT   +E + ++LL+ ++++           ++   ++  I I  K D
Sbjct: 261 GKILGIEKYALERTQKALEKSHIVLLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           + Y+ Y E            EY  +I  S      ++E+ +KI  +     K++P S+
Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSL 378


>gi|308184621|ref|YP_003928754.1| GTP-binding protein EngA [Helicobacter pylori SJM180]
 gi|308060541|gb|ADO02437.1| GTP-binding protein EngA [Helicobacter pylori SJM180]
          Length = 462

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 29/185 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EII+ G    I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   D
Sbjct: 199 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVD 254

Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFI 323
           TAGIR    I  +EK  ++RT   +E + + LL+ ++++           ++   ++  I
Sbjct: 255 TAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGII 314

Query: 324 FIGTKSDL-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKK 368
            I  K D+ Y+ Y E            EY  +I  S      ++E+ +KI  +     K+
Sbjct: 315 LILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKR 374

Query: 369 LPFSI 373
           +P S+
Sbjct: 375 IPTSL 379


>gi|292806618|gb|ADE42439.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|292806570|gb|ADE42415.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|207857927|ref|YP_002244578.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|238690463|sp|B5R578|DER_SALEP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|206709730|emb|CAR34082.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 490

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|122702859|emb|CAL88619.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702393|emb|CAL88387.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701563|emb|CAL88171.1| GTPase [Helicobacter pylori]
 gi|122702643|emb|CAL88511.1| GTPase [Helicobacter pylori]
 gi|122702877|emb|CAL88628.1| GTPase [Helicobacter pylori]
 gi|242255820|gb|ACS88894.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701467|emb|CAL88123.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702229|emb|CAL88305.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806606|gb|ADE42433.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S ++I      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSVLN 167


>gi|292806512|gb|ADE42386.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|226954466|ref|ZP_03824930.1| GTP-binding protein EngA [Acinetobacter sp. ATCC 27244]
 gi|294651482|ref|ZP_06728795.1| GTP-binding protein EngA [Acinetobacter haemolyticus ATCC 19194]
 gi|226834815|gb|EEH67198.1| GTP-binding protein EngA [Acinetobacter sp. ATCC 27244]
 gi|292822632|gb|EFF81522.1| GTP-binding protein EngA [Acinetobacter haemolyticus ATCC 19194]
          Length = 469

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N L  ++  +  D PGTTRD + I  + +G    + DTAG+R
Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVR 235

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305
              + D+++EK  I +T   +++A++++++
Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDANVVVIV 265



 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN + K   A+V D  G TRD
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39


>gi|217032525|ref|ZP_03438016.1| hypothetical protein HPB128_180g24 [Helicobacter pylori B128]
 gi|298736539|ref|YP_003729065.1| GTP-binding protein [Helicobacter pylori B8]
 gi|216945803|gb|EEC24426.1| hypothetical protein HPB128_180g24 [Helicobacter pylori B128]
 gi|298355729|emb|CBI66601.1| GTP-binding protein [Helicobacter pylori B8]
          Length = 461

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 25/178 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             I  +EK  ++RT   +E + + LL+ ++++           ++   ++  I I  K D
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           + Y+ Y E            EY  +I  S      ++E+ +KI  +     K++P S+
Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSL 378


>gi|205353618|ref|YP_002227419.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|238690507|sp|B5RCY8|DER_SALG2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|205273399|emb|CAR38374.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628718|gb|EGE35061.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 490

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|122702669|emb|CAL88524.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702719|emb|CAL88549.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  TLLSKEIKALNLKAAQMSDLIL 90


>gi|122701675|emb|CAL88227.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122700689|emb|CAL87933.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|62181086|ref|YP_217503.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224582944|ref|YP_002636742.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|81309623|sp|Q57LJ0|DER_SALCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783165|sp|C0PYN4|DER_SALPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|62128719|gb|AAX66422.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224467471|gb|ACN45301.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322715573|gb|EFZ07144.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 490

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|32455227|gb|AAP83329.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Enteritidis]
          Length = 490

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|317453515|emb|CBL87867.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  TLLSKEIKALNLKAAQMSDLIL 90


>gi|292806428|gb|ADE42344.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|242255822|gb|ACS88895.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|226328000|ref|ZP_03803518.1| hypothetical protein PROPEN_01891 [Proteus penneri ATCC 35198]
 gi|225203704|gb|EEG86058.1| hypothetical protein PROPEN_01891 [Proteus penneri ATCC 35198]
          Length = 343

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     I DTAG+R+ 
Sbjct: 57  KLAIVGRPNVGKSTLTNRMLGEDRVVVYDMPGTTRDSIYIPMERDDKDYIIIDTAGVRKR 116

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A++ LL+  I++++ IS
Sbjct: 117 GKVKETVEKFSVIKTLQAIEDANVALLV--IDAREGIS 152


>gi|160890563|ref|ZP_02071566.1| hypothetical protein BACUNI_03006 [Bacteroides uniformis ATCC 8492]
 gi|270295703|ref|ZP_06201903.1| ribosome-associated GTPase EngA [Bacteroides sp. D20]
 gi|317479893|ref|ZP_07939009.1| ribosome-associated GTPase EngA [Bacteroides sp. 4_1_36]
 gi|156859562|gb|EDO52993.1| hypothetical protein BACUNI_03006 [Bacteroides uniformis ATCC 8492]
 gi|270273107|gb|EFA18969.1| ribosome-associated GTPase EngA [Bacteroides sp. D20]
 gi|316903940|gb|EFV25778.1| ribosome-associated GTPase EngA [Bacteroides sp. 4_1_36]
          Length = 437

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +ENAD+ +L+
Sbjct: 237 NKVNEDLEYYSVIRSIRSIENADVCILM 264



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKTEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +DDI E+E  K+  + V+ AD+IL + ++
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDV 92


>gi|122702751|emb|CAL88565.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702571|emb|CAL88475.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702633|emb|CAL88506.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701335|emb|CAL88057.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701637|emb|CAL88208.1| GTPase [Helicobacter pylori]
 gi|122701643|emb|CAL88211.1| GTPase [Helicobacter pylori]
 gi|122701645|emb|CAL88212.1| GTPase [Helicobacter pylori]
 gi|122701659|emb|CAL88219.1| GTPase [Helicobacter pylori]
 gi|122701661|emb|CAL88220.1| GTPase [Helicobacter pylori]
 gi|122701663|emb|CAL88221.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700917|emb|CAL88047.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700785|emb|CAL87981.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|122700691|emb|CAL87934.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700685|emb|CAL87931.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700645|emb|CAL87911.1| GTPase [Helicobacter pylori]
 gi|122702599|emb|CAL88489.1| GTPase [Helicobacter pylori]
 gi|122702781|emb|CAL88580.1| GTPase [Helicobacter pylori]
 gi|122702785|emb|CAL88582.1| GTPase [Helicobacter pylori]
 gi|242255848|gb|ACS88908.1| GTPase [Helicobacter pylori]
 gi|242255854|gb|ACS88911.1| GTPase [Helicobacter pylori]
 gi|242255870|gb|ACS88919.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|99905877|gb|ABF68633.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|99905851|gb|ABF68620.1| YphC [Helicobacter pylori]
 gi|122700757|emb|CAL87967.1| GTPase [Helicobacter pylori]
 gi|122700893|emb|CAL88035.1| GTPase [Helicobacter pylori]
 gi|122701347|emb|CAL88063.1| GTPase [Helicobacter pylori]
 gi|122702159|emb|CAL88270.1| GTPase [Helicobacter pylori]
 gi|122702165|emb|CAL88273.1| GTPase [Helicobacter pylori]
 gi|122702243|emb|CAL88312.1| GTPase [Helicobacter pylori]
 gi|122702253|emb|CAL88317.1| GTPase [Helicobacter pylori]
 gi|122702257|emb|CAL88319.1| GTPase [Helicobacter pylori]
 gi|122702351|emb|CAL88366.1| GTPase [Helicobacter pylori]
 gi|122702359|emb|CAL88370.1| GTPase [Helicobacter pylori]
 gi|122702371|emb|CAL88376.1| GTPase [Helicobacter pylori]
 gi|122702385|emb|CAL88383.1| GTPase [Helicobacter pylori]
 gi|122702627|emb|CAL88503.1| GTPase [Helicobacter pylori]
 gi|242255952|gb|ACS88960.1| GTPase [Helicobacter pylori]
 gi|292806456|gb|ADE42358.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806540|gb|ADE42400.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806544|gb|ADE42402.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806630|gb|ADE42445.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|317452827|emb|CBL87849.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|317453507|emb|CBL87863.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|4467665|emb|CAB37784.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303
            ++ KE IK   L+V + +DLIL
Sbjct: 69  ALLSKE-IKALNLKVAQMSDLIL 90


>gi|4467651|emb|CAB37777.1| GTP-binding protein homologue [Helicobacter pylori]
 gi|122701565|emb|CAL88172.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|242255968|gb|ACS88968.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKSLNLKAAQMSDLIL 90


>gi|242255956|gb|ACS88962.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYV 92


>gi|242255858|gb|ACS88913.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702551|emb|CAL88465.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702717|emb|CAL88548.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122702829|emb|CAL88604.1| GTPase [Helicobacter pylori]
 gi|195954197|gb|ACG58804.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  TLLSKEIKALNLKAAQMSDLIL 90


>gi|122700623|emb|CAL87900.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKSLNLKAAQMSDLIL 90


>gi|122700663|emb|CAL87920.1| GTPase [Helicobacter pylori]
 gi|122701585|emb|CAL88182.1| GTPase [Helicobacter pylori]
 gi|122701587|emb|CAL88183.1| GTPase [Helicobacter pylori]
 gi|292806594|gb|ADE42427.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806596|gb|ADE42428.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700635|emb|CAL87906.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKSLNLKAAQMSDLIL 90


>gi|325272131|ref|ZP_08138563.1| GTP-binding protein Der [Pseudomonas sp. TJI-51]
 gi|324102727|gb|EGC00142.1| GTP-binding protein Der [Pseudomonas sp. TJI-51]
          Length = 487

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  +V D PGTTRD + I  + +G      DTAG
Sbjct: 190 KDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDQPGTTRDSIYIPFERDGEKYTFIDTAG 249

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R+   I   VEK  + +T   +++A++++ +
Sbjct: 250 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 281



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L K   AIV D+ G TRD    D   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ + +E AD +L L
Sbjct: 65  VGMDEKMAEQSLMAIEEADYVLFL 88


>gi|317452853|emb|CBL87862.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|302342246|ref|YP_003806775.1| ribosome-associated GTPase EngA [Desulfarculus baarsii DSM 2075]
 gi|301638859|gb|ADK84181.1| ribosome-associated GTPase EngA [Desulfarculus baarsii DSM 2075]
          Length = 479

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL NAL      +V+D+PGTTRD +   + +      I DTAGIR  
Sbjct: 210 RVALIGRPNVGKSSLLNALFGGPRVVVSDVPGTTRDAVDTPIQVGDKKYVIIDTAGIRRR 269

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKE 307
             +   +EK G+ R+   ++ A +++ + E
Sbjct: 270 GKVAPGIEKAGVFRSLRAIDRAHVVVAMME 299



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+LFN L +   A+V D+PG TRD L     ++   V + DT G     
Sbjct: 5   MAIVGRPNVGKSTLFNRLTRTRQALVHDLPGVTRDRLYGRAIIDDRQVTVIDTGGFDPPA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D     E   +  + +E ADLIL +
Sbjct: 65  DQPFAAEVHAQIAMAMEEADLILFV 89


>gi|161612723|ref|YP_001586688.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|189037158|sp|A9N205|DER_SALPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|161362087|gb|ABX65855.1| hypothetical protein SPAB_00422 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 490

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|122702883|emb|CAL88631.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702123|emb|CAL88252.1| GTPase [Helicobacter pylori]
 gi|122702555|emb|CAL88467.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702149|emb|CAL88265.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702185|emb|CAL88283.1| GTPase [Helicobacter pylori]
 gi|122702721|emb|CAL88550.1| GTPase [Helicobacter pylori]
 gi|292806450|gb|ADE42355.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806462|gb|ADE42361.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806468|gb|ADE42364.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806616|gb|ADE42438.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701617|emb|CAL88198.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702233|emb|CAL88307.1| GTPase [Helicobacter pylori]
 gi|122702601|emb|CAL88490.1| GTPase [Helicobacter pylori]
 gi|122702603|emb|CAL88491.1| GTPase [Helicobacter pylori]
 gi|122702609|emb|CAL88494.1| GTPase [Helicobacter pylori]
 gi|122702671|emb|CAL88525.1| GTPase [Helicobacter pylori]
 gi|122702673|emb|CAL88526.1| GTPase [Helicobacter pylori]
 gi|122702847|emb|CAL88613.1| GTPase [Helicobacter pylori]
 gi|122702863|emb|CAL88621.1| GTPase [Helicobacter pylori]
 gi|122702885|emb|CAL88632.1| GTPase [Helicobacter pylori]
 gi|242255866|gb|ACS88917.1| GTPase [Helicobacter pylori]
 gi|242255868|gb|ACS88918.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700719|emb|CAL87948.1| GTPase [Helicobacter pylori]
 gi|292806668|gb|ADE42464.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806676|gb|ADE42468.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700653|emb|CAL87915.1| GTPase [Helicobacter pylori]
 gi|122700671|emb|CAL87924.1| GTPase [Helicobacter pylori]
 gi|122701499|emb|CAL88139.1| GTPase [Helicobacter pylori]
 gi|122701605|emb|CAL88192.1| GTPase [Helicobacter pylori]
 gi|122701609|emb|CAL88194.1| GTPase [Helicobacter pylori]
 gi|242255850|gb|ACS88909.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700675|emb|CAL87926.1| GTPase [Helicobacter pylori]
 gi|122701503|emb|CAL88141.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|18075557|emb|CAD11174.1| GTP-binding protein [Helicobacter pylori]
 gi|122700659|emb|CAL87918.1| GTPase [Helicobacter pylori]
 gi|122700771|emb|CAL87974.1| GTPase [Helicobacter pylori]
 gi|122700915|emb|CAL88046.1| GTPase [Helicobacter pylori]
 gi|122701325|emb|CAL88052.1| GTPase [Helicobacter pylori]
 gi|122701383|emb|CAL88081.1| GTPase [Helicobacter pylori]
 gi|122701549|emb|CAL88164.1| GTPase [Helicobacter pylori]
 gi|122701561|emb|CAL88170.1| GTPase [Helicobacter pylori]
 gi|122701705|emb|CAL88242.1| GTPase [Helicobacter pylori]
 gi|122702473|emb|CAL88427.1| GTPase [Helicobacter pylori]
 gi|122702559|emb|CAL88469.1| GTPase [Helicobacter pylori]
 gi|122702651|emb|CAL88515.1| GTPase [Helicobacter pylori]
 gi|122702659|emb|CAL88519.1| GTPase [Helicobacter pylori]
 gi|122702723|emb|CAL88551.1| GTPase [Helicobacter pylori]
 gi|122702775|emb|CAL88577.1| GTPase [Helicobacter pylori]
 gi|122702817|emb|CAL88598.1| GTPase [Helicobacter pylori]
 gi|122702861|emb|CAL88620.1| GTPase [Helicobacter pylori]
 gi|242255846|gb|ACS88907.1| GTPase [Helicobacter pylori]
 gi|242255942|gb|ACS88955.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|330874711|gb|EGH08860.1| GTP-binding protein Der [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 440

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309
           +R+   I   VEK  + +T   +++A++++ + +                          
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
            +K +   P   DF+ I  +  L+  + +  D H IS+  G G+  L   +++   +   
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISAMHGTGVGNLYQSVQNSFKSAVT 370

Query: 368 KLPFS 372
           + P S
Sbjct: 371 RWPTS 375



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD++L L
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFL 88


>gi|317453539|emb|CBL87879.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  TLLSKEIKALNLKAAQMSDLIL 90


>gi|307637526|gb|ADN79976.1| GTP-binding protein [Helicobacter pylori 908]
 gi|325996115|gb|ADZ51520.1| GTP-binding protein [Helicobacter pylori 2018]
 gi|325997711|gb|ADZ49919.1| GTP-binding protein [Helicobacter pylori 2017]
          Length = 462

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 6/99 (6%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EII+ G    I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   D
Sbjct: 199 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVD 254

Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310
           TAGIR    I  +EK  + RT   +E + + LL+ ++++
Sbjct: 255 TAGIRHRGKILGIEKYALDRTKKALEKSHIALLVLDVSA 293


>gi|295085093|emb|CBK66616.1| iron-only hydrogenase maturation protein HydF [Bacteroides
           xylanisolvens XB1A]
          Length = 396

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 18/166 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D+A+V++ PGTT D+++  ++++G       DT G
Sbjct: 10  NRLHITLFGRRNSGKSSLINALTGQDIALVSNTPGTTTDLVSKAMEIQGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISF---PKNIDFIFIGTK-- 328
             +  ++ E   I RT   +E  D+ LLL E  +   +KEI      KNI  I +  K  
Sbjct: 70  FDDEGELGELR-ISRTLKAIEKTDIALLLCEDTTFFHEKEILALLKEKNIPVIPVLNKID 128

Query: 329 ----SDLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKF 366
               SD  +TY EE    +  LIS+    G+E +   I   L + F
Sbjct: 129 IRENSDHLATYIEEQCKIHPLLISAKEKIGIELIRQAILEKLPSDF 174


>gi|262374928|ref|ZP_06068162.1| ribosome-associated GTPase EngA [Acinetobacter lwoffii SH145]
 gi|262309941|gb|EEY91070.1| ribosome-associated GTPase EngA [Acinetobacter lwoffii SH145]
          Length = 469

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N L  ++  +  D PGTTRD + I  + +G    + DTAG+R
Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVR 235

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305
              + D+++EK  I +T   +++A++I+++
Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDANVIVVV 265



 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN + K   A+V D  G TRD
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39


>gi|254779193|ref|YP_003057298.1| GTP-binding protein EngA [Helicobacter pylori B38]
 gi|254001104|emb|CAX29059.1| Putative GTP-binding protein, EngA family [Helicobacter pylori B38]
          Length = 461

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 4/98 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISF 316
            ++ KE         + +DLIL +   K I S ++I  
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKL 107



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 25/178 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             I  +EK  ++RT   +E + + LL+ ++++           ++   ++  I I  K D
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           + Y+ Y E            EY  +I  S      ++E+ +KI  +     K++P S+
Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSL 378


>gi|189502515|ref|YP_001958232.1| GTP-binding protein EngA [Candidatus Amoebophilus asiaticus 5a2]
 gi|238692314|sp|B3ETF1|DER_AMOA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189497956|gb|ACE06503.1| hypothetical protein Aasi_1169 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 433

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ILG  N GKSSL NAL  ++ +IVT I GTTRD +    +L G    ++DTAGIR+ 
Sbjct: 175 KIAILGRPNVGKSSLLNALLGEERSIVTPIAGTTRDAIDTTYNLYGKNFILTDTAGIRKK 234

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E     R    +++AD+ +++
Sbjct: 235 SKVKEDIEFYSTLRALKALQDADVCIIM 262



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++  AI+    GTTRD         G    + DT G ++ +
Sbjct: 5   VAIVGRPNVGKSTLFNRLVEERKAIMASESGTTRDRHYGYATWNGKNFTVVDTGGYVQGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            DI EK   ++  + +E A ++L +
Sbjct: 65  SDIFEKSICEQAKIAIEEASVVLFM 89


>gi|122702605|emb|CAL88492.1| GTPase [Helicobacter pylori]
 gi|242255882|gb|ACS88925.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701577|emb|CAL88178.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701651|emb|CAL88215.1| GTPase [Helicobacter pylori]
 gi|122701653|emb|CAL88216.1| GTPase [Helicobacter pylori]
 gi|122701669|emb|CAL88224.1| GTPase [Helicobacter pylori]
 gi|122702187|emb|CAL88284.1| GTPase [Helicobacter pylori]
 gi|122702191|emb|CAL88286.1| GTPase [Helicobacter pylori]
 gi|122702197|emb|CAL88289.1| GTPase [Helicobacter pylori]
 gi|122702201|emb|CAL88291.1| GTPase [Helicobacter pylori]
 gi|122702685|emb|CAL88532.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701409|emb|CAL88094.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701473|emb|CAL88126.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702247|emb|CAL88314.1| GTPase [Helicobacter pylori]
 gi|122702289|emb|CAL88335.1| GTPase [Helicobacter pylori]
 gi|122702401|emb|CAL88391.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKITLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700909|emb|CAL88043.1| GTPase [Helicobacter pylori]
 gi|122702283|emb|CAL88332.1| GTPase [Helicobacter pylori]
 gi|122702285|emb|CAL88333.1| GTPase [Helicobacter pylori]
 gi|122702299|emb|CAL88340.1| GTPase [Helicobacter pylori]
 gi|122702325|emb|CAL88353.1| GTPase [Helicobacter pylori]
 gi|122702765|emb|CAL88572.1| GTPase [Helicobacter pylori]
 gi|292806472|gb|ADE42366.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806578|gb|ADE42419.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806702|gb|ADE42481.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|122700655|emb|CAL87916.1| GTPase [Helicobacter pylori]
 gi|122702851|emb|CAL88615.1| GTPase [Helicobacter pylori]
 gi|122702855|emb|CAL88617.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700723|emb|CAL87950.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S +++      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166


>gi|18075571|emb|CAD11181.1| GTP-binding protein [Helicobacter pylori]
 gi|122702803|emb|CAL88591.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806410|gb|ADE42335.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|237654043|ref|YP_002890357.1| GTP-binding protein EngA [Thauera sp. MZ1T]
 gi|237625290|gb|ACR01980.1| small GTP-binding protein [Thauera sp. MZ1T]
          Length = 442

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 59/100 (59%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G K+ I+G  N GKS+L N L  ++  I  D+PGTTRD ++I  +  G    + DTAG+R
Sbjct: 176 GPKVAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDAISIPFERGGKRYTLIDTAGLR 235

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   VEK  + +T   V+  ++++L+  +++ ++IS
Sbjct: 236 RRGKVFEAVEKFSVIKTLQAVQECNVVVLV--LDAAQDIS 273



 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 19/94 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-----LTIDLDLEGYLVKISDTAG 276
           IV++G  N GKS+LFN L +   A+V D PG TRD         D D   YLV   DTAG
Sbjct: 5   IVLVGRPNVGKSTLFNRLTRTRDALVADQPGLTRDRHYGIGRVGDRD---YLV--VDTAG 59

Query: 277 IRETDDIVEKEGI-----KRTFLEVENADLILLL 305
                D V K+GI     ++    +  AD++L L
Sbjct: 60  F----DPVAKDGIMHEMARQAEQAIAEADVLLFL 89


>gi|122702767|emb|CAL88573.1| GTPase [Helicobacter pylori]
 gi|122702769|emb|CAL88574.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|122702379|emb|CAL88380.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|122702507|emb|CAL88444.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKSLNLKAAQMSDLIL 90


>gi|122702887|emb|CAL88633.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701371|emb|CAL88075.1| GTPase [Helicobacter pylori]
 gi|122701395|emb|CAL88087.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122701493|emb|CAL88136.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701657|emb|CAL88218.1| GTPase [Helicobacter pylori]
 gi|242255818|gb|ACS88893.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701455|emb|CAL88117.1| GTPase [Helicobacter pylori]
 gi|122702121|emb|CAL88251.1| GTPase [Helicobacter pylori]
 gi|292806598|gb|ADE42429.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701683|emb|CAL88231.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700793|emb|CAL87985.1| GTPase [Helicobacter pylori]
 gi|122700897|emb|CAL88037.1| GTPase [Helicobacter pylori]
 gi|122702145|emb|CAL88263.1| GTPase [Helicobacter pylori]
 gi|122702403|emb|CAL88392.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700783|emb|CAL87980.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122700679|emb|CAL87928.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700731|emb|CAL87954.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|4467681|emb|CAB37792.1| GTP-binding protein homologue [Helicobacter pylori]
 gi|122702711|emb|CAL88545.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|4467647|emb|CAB37775.1| GTP-binding protein homologue [Helicobacter pylori]
 gi|4467649|emb|CAB37776.1| GTP-binding protein homologue [Helicobacter pylori]
 gi|99905845|gb|ABF68617.1| YphC [Helicobacter pylori]
 gi|99905847|gb|ABF68618.1| YphC [Helicobacter pylori]
 gi|122700649|emb|CAL87913.1| GTPase [Helicobacter pylori]
 gi|122700651|emb|CAL87914.1| GTPase [Helicobacter pylori]
 gi|122700693|emb|CAL87935.1| GTPase [Helicobacter pylori]
 gi|122701359|emb|CAL88069.1| GTPase [Helicobacter pylori]
 gi|122701367|emb|CAL88073.1| GTPase [Helicobacter pylori]
 gi|122701385|emb|CAL88082.1| GTPase [Helicobacter pylori]
 gi|122701489|emb|CAL88134.1| GTPase [Helicobacter pylori]
 gi|122701501|emb|CAL88140.1| GTPase [Helicobacter pylori]
 gi|122701513|emb|CAL88146.1| GTPase [Helicobacter pylori]
 gi|122701521|emb|CAL88150.1| GTPase [Helicobacter pylori]
 gi|122701529|emb|CAL88154.1| GTPase [Helicobacter pylori]
 gi|122701553|emb|CAL88166.1| GTPase [Helicobacter pylori]
 gi|122701569|emb|CAL88174.1| GTPase [Helicobacter pylori]
 gi|122701571|emb|CAL88175.1| GTPase [Helicobacter pylori]
 gi|122702219|emb|CAL88300.1| GTPase [Helicobacter pylori]
 gi|122702607|emb|CAL88493.1| GTPase [Helicobacter pylori]
 gi|122702631|emb|CAL88505.1| GTPase [Helicobacter pylori]
 gi|122702777|emb|CAL88578.1| GTPase [Helicobacter pylori]
 gi|242255852|gb|ACS88910.1| GTPase [Helicobacter pylori]
 gi|242255872|gb|ACS88920.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|4467679|emb|CAB37791.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKPAQMSDLIL 90


>gi|15611840|ref|NP_223491.1| GTP-binding protein EngA [Helicobacter pylori J99]
 gi|8134435|sp|Q9ZL09|DER_HELPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|4155327|gb|AAD06341.1| putative [Helicobacter pylori J99]
          Length = 462

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 6/106 (5%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           + + K  EII+ G    I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +  
Sbjct: 192 LEETKEEEIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGD 247

Query: 267 YLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310
             +   DTAGIR    I  +EK  + RT   +E + + LL+ ++++
Sbjct: 248 QKICFVDTAGIRHRGKILGIEKYALDRTQKALEKSHIALLVLDVSA 293


>gi|292670962|ref|ZP_06604388.1| GTP-binding protein EngA [Selenomonas noxia ATCC 43541]
 gi|292647583|gb|EFF65555.1| GTP-binding protein EngA [Selenomonas noxia ATCC 43541]
          Length = 428

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 5/96 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL N L  +D  IV+D+PGTTRD +      +G    + DTAG+R   
Sbjct: 166 IAVVGRPNVGKSSLVNRLLGEDRVIVSDVPGTTRDAIDTHFTRDGVKYLLIDTAGMRRKG 225

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
            I   VE+  + R+   ++ A ++L++  IN+ + I
Sbjct: 226 KITLPVERYSVMRSLRAIDRAGVVLMV--INAAEGI 259



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEG 288
           GKS+LFN + KK ++IV D+PG TRD + +D +   +   + DT GI   E+D I+ +  
Sbjct: 2   GKSTLFNQIGKKRISIVDDMPGVTRDRIYMDAEWLNHEFIMIDTGGIEFDESDHIL-RSM 60

Query: 289 IKRTFLEVENADLILLL 305
             +  L +E AD+IL L
Sbjct: 61  RSQAELAIEEADVILFL 77


>gi|242255874|gb|ACS88921.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|212690606|ref|ZP_03298734.1| hypothetical protein BACDOR_00092 [Bacteroides dorei DSM 17855]
 gi|212666852|gb|EEB27424.1| hypothetical protein BACDOR_00092 [Bacteroides dorei DSM 17855]
          Length = 396

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 8/121 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   + + G  N+GKSSL NAL  +D A+V+DIPGTT D ++  ++++G       DT G
Sbjct: 10  NRLHVALFGRRNSGKSSLINALTGQDTALVSDIPGTTTDTVSKAMEIQGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFIGTKSD 330
             +  ++ E   I RT   +E  D+ LLL E  + +E          KNI  I +  K+D
Sbjct: 70  FDDEGELGEMR-IIRTLKAIEQTDIALLLCEDEAHEEEKKWMKQLEEKNIPVILLLNKAD 128

Query: 331 L 331
           +
Sbjct: 129 I 129


>gi|122702195|emb|CAL88288.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702273|emb|CAL88327.1| GTPase [Helicobacter pylori]
          Length = 168

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNRLAKEKIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             + KE         + +DLIL +
Sbjct: 67  AFLSKEIKAFNLKAAQMSDLILYV 90


>gi|122702279|emb|CAL88330.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S ++I      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166


>gi|122700665|emb|CAL87921.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|99905855|gb|ABF68622.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|18075565|emb|CAD11178.1| GTP-binding protein [Helicobacter pylori]
 gi|122702807|emb|CAL88593.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|328949043|ref|YP_004366380.1| GTP-binding protein engA [Treponema succinifaciens DSM 2489]
 gi|328449367|gb|AEB15083.1| GTP-binding protein engA [Treponema succinifaciens DSM 2489]
          Length = 517

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 27/194 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ILG  N GKS+L NAL   + +IV+D  GTTRDV+       G+ ++I DTAGIR  
Sbjct: 243 RIAILGKPNVGKSTLSNALTHTESSIVSDYAGTTRDVVEGSFRYNGHDIQILDTAGIRRK 302

Query: 281 DDI---VEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKS 329
             +   VE   + R    ++  D+  +       L E + K   ++F +    +FI  K 
Sbjct: 303 SKVKENVEYYSVNRAIKTLDECDIAFIMIDAVEGLAEQDKKITGLAFERGRGVVFILNKW 362

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH-------KRHLYH 382
           DL     E+  +     T E ++ +  ++     N    +P S  +H          L  
Sbjct: 363 DLL----EDQGNKTVKKTKEWIQTMFGQM-----NWAPIIPLSAKNHDGIKNLMDTALEI 413

Query: 383 LSQTVRYLEMASLN 396
            SQ  R ++ ASLN
Sbjct: 414 YSQLTRKVDTASLN 427



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IVI G  N GKS+LFNAL     AI    PG TRD +     L G  V + DT G + T 
Sbjct: 65  IVIAGRPNVGKSTLFNALTHTKRAITDPTPGVTRDPVEGTCFLSGLPVHLMDTGGYKLTR 124

Query: 282 DIVEKEG------IKRTFLEVENADLILLL---KEINSKKE 313
           ++  +E       +++T    + AD ILLL    EINS+ E
Sbjct: 125 NLKSRESEMDDLVVEKTVSMFQKADKILLLLDATEINSEDE 165


>gi|317012645|gb|ADU83253.1| GTP-binding protein EngA [Helicobacter pylori Lithuania75]
          Length = 461

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 6/99 (6%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EII+ G    I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   D
Sbjct: 198 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVD 253

Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310
           TAGIR    I  +EK  ++RT   +E + ++LL+ ++++
Sbjct: 254 TAGIRHRGKILGIEKYALERTQKALEKSHIVLLVLDVSA 292


>gi|292806696|gb|ADE42478.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|242255816|gb|ACS88892.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|195954215|gb|ACG58813.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702691|emb|CAL88535.1| GTPase [Helicobacter pylori]
 gi|317453533|emb|CBL87876.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702865|emb|CAL88622.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA+  +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARGRIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S +++      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|122702543|emb|CAL88461.1| GTPase [Helicobacter pylori]
 gi|122702749|emb|CAL88564.1| GTPase [Helicobacter pylori]
 gi|122702757|emb|CAL88568.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702629|emb|CAL88504.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701519|emb|CAL88149.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702213|emb|CAL88297.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701481|emb|CAL88130.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|122701387|emb|CAL88083.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700919|emb|CAL88048.1| GTPase [Helicobacter pylori]
 gi|122701631|emb|CAL88205.1| GTPase [Helicobacter pylori]
 gi|122702527|emb|CAL88453.1| GTPase [Helicobacter pylori]
 gi|292806412|gb|ADE42336.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700631|emb|CAL87904.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKSLNLKAAQMSDLIL 90


>gi|122700599|emb|CAL87888.1| GTPase [Helicobacter pylori]
 gi|122700735|emb|CAL87956.1| GTPase [Helicobacter pylori]
 gi|122700809|emb|CAL87993.1| GTPase [Helicobacter pylori]
 gi|122700813|emb|CAL87995.1| GTPase [Helicobacter pylori]
 gi|122700819|emb|CAL87998.1| GTPase [Helicobacter pylori]
 gi|122701463|emb|CAL88121.1| GTPase [Helicobacter pylori]
 gi|122701483|emb|CAL88131.1| GTPase [Helicobacter pylori]
 gi|122701707|emb|CAL88243.1| GTPase [Helicobacter pylori]
 gi|122702183|emb|CAL88282.1| GTPase [Helicobacter pylori]
 gi|122702481|emb|CAL88431.1| GTPase [Helicobacter pylori]
 gi|122702509|emb|CAL88445.1| GTPase [Helicobacter pylori]
 gi|122702827|emb|CAL88603.1| GTPase [Helicobacter pylori]
 gi|195954209|gb|ACG58810.1| YphC [Helicobacter pylori]
 gi|195954211|gb|ACG58811.1| YphC [Helicobacter pylori]
 gi|292806464|gb|ADE42362.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806558|gb|ADE42409.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806568|gb|ADE42414.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806666|gb|ADE42463.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806686|gb|ADE42473.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|15645453|ref|NP_207627.1| GTP-binding protein EngA [Helicobacter pylori 26695]
 gi|3915379|sp|O25505|DER_HELPY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|2313967|gb|AAD07883.1| GTP-binding protein homologue (yphC) [Helicobacter pylori 26695]
          Length = 458

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 6/99 (6%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EII+ G    I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   D
Sbjct: 195 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVD 250

Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310
           TAGIR    I  +EK  ++RT   +E + + LL+ ++++
Sbjct: 251 TAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSA 289


>gi|326624338|gb|EGE30683.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 504

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 218 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 277

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 278 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 313



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 19  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 78

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 79  DGVETRMAEQSLLAIEEADVVLFM 102


>gi|317452813|emb|CBL87842.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|317182147|dbj|BAJ59931.1| GTP-binding protein EngA [Helicobacter pylori F57]
          Length = 461

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA+  +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARARIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYI 93



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILVGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINS 310
             I  +EK  ++RT   +E + + LL+ ++++
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSA 292


>gi|317009155|gb|ADU79735.1| GTP-binding protein EngA [Helicobacter pylori India7]
          Length = 462

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 29/192 (15%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           + + K  EII+ G    I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +  
Sbjct: 192 LEETKEEEIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGD 247

Query: 267 YLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISF 316
             +   DTAGIR    I  +EK  ++RT   +E + + LL+ ++++           ++ 
Sbjct: 248 QKICFVDTAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLAD 307

Query: 317 PKNIDFIFIGTKSDL-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSI 361
             ++  I I  K D+ Y+ Y E            EY  +I  S      ++E+ +KI  +
Sbjct: 308 KHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEV 367

Query: 362 LSNKFKKLPFSI 373
                K++P S+
Sbjct: 368 YECFSKRIPTSL 379


>gi|292806672|gb|ADE42466.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806654|gb|ADE42457.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806694|gb|ADE42477.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|242255814|gb|ACS88891.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702625|emb|CAL88502.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702537|emb|CAL88458.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702561|emb|CAL88470.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702557|emb|CAL88468.1| GTPase [Helicobacter pylori]
 gi|122702575|emb|CAL88477.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702835|emb|CAL88607.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702563|emb|CAL88471.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702791|emb|CAL88585.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701639|emb|CAL88209.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNHLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701491|emb|CAL88135.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702151|emb|CAL88266.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701433|emb|CAL88106.1| GTPase [Helicobacter pylori]
 gi|292806486|gb|ADE42373.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|122700841|emb|CAL88009.1| GTPase [Helicobacter pylori]
 gi|122701461|emb|CAL88120.1| GTPase [Helicobacter pylori]
 gi|122702239|emb|CAL88310.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700739|emb|CAL87958.1| GTPase [Helicobacter pylori]
 gi|122702841|emb|CAL88610.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700899|emb|CAL88038.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700643|emb|CAL87910.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700667|emb|CAL87922.1| GTPase [Helicobacter pylori]
 gi|122700867|emb|CAL88022.1| GTPase [Helicobacter pylori]
 gi|122701573|emb|CAL88176.1| GTPase [Helicobacter pylori]
 gi|122702389|emb|CAL88385.1| GTPase [Helicobacter pylori]
 gi|122702437|emb|CAL88409.1| GTPase [Helicobacter pylori]
 gi|122702443|emb|CAL88412.1| GTPase [Helicobacter pylori]
 gi|122702465|emb|CAL88423.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|330969066|gb|EGH69132.1| GTP-binding protein Der [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 490

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309
           +R+   I   VEK  + +T   +++A++++ + +                          
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
            +K +   P   DF+ I  +  L+  + +  D H IS+  G G+  L   +++   +   
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISAMHGTGVGNLYQSVQNSFKSAVT 370

Query: 368 KLPFS 372
           + P S
Sbjct: 371 RWPTS 375



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD++L L
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFL 88


>gi|308063376|gb|ADO05263.1| GTP-binding protein EngA [Helicobacter pylori Sat464]
          Length = 460

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 47/231 (20%)

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +   IE DLD    E ++N + KE   +                  E+I+ G    I+G 
Sbjct: 169 LNQIIEQDLDADILESLENNAPKEETKE------------------EVIQVG----IIGR 206

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VE 285
            N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR    I  +E
Sbjct: 207 VNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRGKILGIE 266

Query: 286 KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-YSTYT 336
           K  ++RT   +E + + LL+ ++++           ++   ++  I I  K D+ Y+ Y 
Sbjct: 267 KYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYE 326

Query: 337 E------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           E            EY  +I  S      ++E+ +KI  +     K++P S+
Sbjct: 327 EIMATLKRKFRFLEYAPIITTSCLKAHHIDEIKHKIIEVYECFSKRIPTSL 377


>gi|297380037|gb|ADI34924.1| GTP-binding protein EngA [Helicobacter pylori v225d]
          Length = 461

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 25/178 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             I  +EK  ++RT   +E + ++LL+ ++++           ++   ++  I I  K D
Sbjct: 261 GKILGIEKYALERTQKALEKSHIVLLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           + Y+ Y E            EY  +I  S      ++E+ +KI  +     K++P S+
Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSL 378


>gi|292806670|gb|ADE42465.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806466|gb|ADE42363.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|242255878|gb|ACS88923.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|237725197|ref|ZP_04555678.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229436463|gb|EEO46540.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 396

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 8/121 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   + + G  N+GKSSL NAL  +D A+V+DIPGTT D ++  ++++G       DT G
Sbjct: 10  NRLHVALFGRRNSGKSSLINALTGQDTALVSDIPGTTTDTVSKAMEIQGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFIGTKSD 330
             +  ++ E   I RT   +E  D+ LLL E  + +E          KNI  I +  K+D
Sbjct: 70  FDDEGELGEMR-IIRTLKAIEQTDIALLLCEDEAHEEEKKWMKQLEEKNIPVILLLNKAD 128

Query: 331 L 331
           +
Sbjct: 129 I 129


>gi|227499570|ref|ZP_03929677.1| GTPase [Anaerococcus tetradius ATCC 35098]
 gi|227218329|gb|EEI83583.1| GTPase [Anaerococcus tetradius ATCC 35098]
          Length = 437

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E I +  +I I+G  NAGKSSL N L  ++  IVTDI GTTRD +       G    + D
Sbjct: 170 EKIEDETRIAIIGKPNAGKSSLVNLLLNEERMIVTDIAGTTRDAVDSYWTYNGNNYVLID 229

Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEIN 309
           TAG+R    +   VE    +RTF  V++A++ L L + N
Sbjct: 230 TAGLRRKSKVKESVEYYANQRTFDAVDSAEICLFLIDAN 268



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 30/165 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + ++G +N GKS+LFN L  K  +I  DI G TRD +   ++ +     + DT G+    
Sbjct: 6   VTLVGRTNVGKSTLFNRLVGKRKSITEDISGVTRDRIVDKVEWQNKEFLLVDTGGLDISN 65

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326
           +E  +   K  +++  LE    DL+L + +    +E   P ++D            I + 
Sbjct: 66  KEIMNAEVKSQVEKALLE---TDLVLFVVD---GREGPNPHDVDIANEVRKYNKPVIIVA 119

Query: 327 TKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSIL 362
            K D +    E YD          +IS+   +GL +L++KI S +
Sbjct: 120 NKIDSFKMPDEIYDFYQFGFDDLLMISAEQSKGLGDLLDKIVSYI 164


>gi|161502327|ref|YP_001569439.1| GTP-binding protein EngA [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863674|gb|ABX20297.1| hypothetical protein SARI_00360 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 504

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 218 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 277

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 278 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 313



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 19  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 78

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 79  DGVETRMAEQSLLAIEEADVVLFM 102


>gi|122702843|emb|CAL88611.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702373|emb|CAL88377.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702345|emb|CAL88363.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|122701477|emb|CAL88128.1| GTPase [Helicobacter pylori]
 gi|122702565|emb|CAL88472.1| GTPase [Helicobacter pylori]
 gi|122702569|emb|CAL88474.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702215|emb|CAL88298.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701627|emb|CAL88203.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701435|emb|CAL88107.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701711|emb|CAL88245.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|122701397|emb|CAL88088.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702153|emb|CAL88267.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700619|emb|CAL87898.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|18075573|emb|CAD11182.1| GTP-binding protein [Helicobacter pylori]
 gi|122702805|emb|CAL88592.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  TLLSKEIKALNLKAAQMSDLIL 90


>gi|330975909|gb|EGH75975.1| GTP-binding protein Der [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 490

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309
           +R+   I   VEK  + +T   +++A++++ + +                          
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
            +K +   P   DF+ I  +  L+  + +  D H IS+  G G+  L   +++   +   
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISALHGTGVGNLYQSVQNSFKSAVT 370

Query: 368 KLPFS 372
           + P S
Sbjct: 371 RWPTS 375



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD++L L
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFL 88


>gi|304387839|ref|ZP_07370013.1| ribosome-associated GTPase EngA [Neisseria meningitidis ATCC 13091]
 gi|304338104|gb|EFM04240.1| ribosome-associated GTPase EngA [Neisseria meningitidis ATCC 13091]
          Length = 536

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 230 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 289

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 290 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 323



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 56  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFL 140


>gi|122702485|emb|CAL88433.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702193|emb|CAL88287.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700883|emb|CAL88030.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700845|emb|CAL88011.1| GTPase [Helicobacter pylori]
 gi|122700855|emb|CAL88016.1| GTPase [Helicobacter pylori]
 gi|122702531|emb|CAL88455.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700789|emb|CAL87983.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|71065252|ref|YP_263979.1| GTP-binding protein EngA [Psychrobacter arcticus 273-4]
 gi|123649239|sp|Q4FTW3|DER_PSYA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|71038237|gb|AAZ18545.1| putative GTP-binding protein, HSR1-related [Psychrobacter arcticus
           273-4]
          Length = 473

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G K+ I+G  N GKS+L N L  +D  +V D+PGTTRD + I    +G    + DTAG+R
Sbjct: 177 GLKLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIYIPYKRDGKDYVLIDTAGVR 236

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305
              + D+ VEK  + +T   +E++++ +++
Sbjct: 237 RRGKIDEKVEKFSVIKTLQAIEDSNVTVIV 266



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN   K   A+V D+ G TRD    D   E     + DT GI E D
Sbjct: 7   VALIGRPNVGKSTLFNQFTKSRQALVADLSGLTRDRQYGDATYEDKAFIVVDTGGIGEAD 66

Query: 282 D---IVEKEGIKRTFLEVENADLILLL 305
           D    ++    ++++  +  AD+I+ +
Sbjct: 67  DGRGDIDDYMSEQSYTAIHEADIIVFV 93


>gi|325135934|gb|EGC58544.1| GTP-binding protein [Neisseria meningitidis M0579]
          Length = 536

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 230 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 289

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 290 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 323



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 56  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFL 140


>gi|317453511|emb|CBL87865.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|317452847|emb|CBL87859.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|309775502|ref|ZP_07670502.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916596|gb|EFP62336.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 263

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NA+  ++  IV++I GTTRD +      EG    + DTAGIR+ 
Sbjct: 3   KFCVIGRPNVGKSSLVNAVLNQERVIVSNIEGTTRDAIDTPFKREGKEYVVIDTAGIRKR 62

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + R    +E +D++L++
Sbjct: 63  GKVYESIEKYSVLRAMSAIERSDVVLVV 90


>gi|302185741|ref|ZP_07262414.1| GTP-binding protein EngA [Pseudomonas syringae pv. syringae 642]
 gi|330950783|gb|EGH51043.1| GTP-binding protein Der [Pseudomonas syringae Cit 7]
          Length = 490

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309
           +R+   I   VEK  + +T   +++A++++ + +                          
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
            +K +   P   DF+ I  +  L+  + +  D H IS+  G G+  L   +++   +   
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISALHGTGVGNLYQSVQNSFKSAVT 370

Query: 368 KLPFS 372
           + P S
Sbjct: 371 RWPTS 375



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD++L L
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFL 88


>gi|292806592|gb|ADE42426.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806590|gb|ADE42425.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806438|gb|ADE42349.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|254670450|emb|CBA06089.1| putative GTP-binding protein [Neisseria meningitidis alpha153]
          Length = 536

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 230 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 289

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 290 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 323



 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 56  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFL 140


>gi|242255894|gb|ACS88931.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701333|emb|CAL88056.1| GTPase [Helicobacter pylori]
 gi|122702713|emb|CAL88546.1| GTPase [Helicobacter pylori]
 gi|292806502|gb|ADE42381.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701389|emb|CAL88084.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701709|emb|CAL88244.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701543|emb|CAL88161.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700891|emb|CAL88034.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKATQMSDLIL 90


>gi|122700797|emb|CAL87987.1| GTPase [Helicobacter pylori]
 gi|122700865|emb|CAL88021.1| GTPase [Helicobacter pylori]
 gi|122701331|emb|CAL88055.1| GTPase [Helicobacter pylori]
 gi|122702441|emb|CAL88411.1| GTPase [Helicobacter pylori]
 gi|122702529|emb|CAL88454.1| GTPase [Helicobacter pylori]
 gi|292806614|gb|ADE42437.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700885|emb|CAL88031.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|122700647|emb|CAL87912.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|99905873|gb|ABF68631.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|18075575|emb|CAD11183.1| GTP-binding protein [Helicobacter pylori]
 gi|122702579|emb|CAL88479.1| GTPase [Helicobacter pylori]
 gi|122702809|emb|CAL88594.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|325144121|gb|EGC66428.1| GTP-binding protein [Neisseria meningitidis M01-240013]
          Length = 536

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 230 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 289

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 290 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 323



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 56  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFL 140


>gi|292806414|gb|ADE42337.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806504|gb|ADE42382.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|242255902|gb|ACS88935.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702593|emb|CAL88486.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702701|emb|CAL88540.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122702501|emb|CAL88441.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702761|emb|CAL88570.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702613|emb|CAL88496.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702227|emb|CAL88304.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702217|emb|CAL88299.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702173|emb|CAL88277.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMTK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702221|emb|CAL88301.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700769|emb|CAL87973.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|4467659|emb|CAB37781.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|66044500|ref|YP_234341.1| GTP-binding protein EngA [Pseudomonas syringae pv. syringae B728a]
 gi|81308464|sp|Q4ZX19|DER_PSEU2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|63255207|gb|AAY36303.1| Small GTP-binding protein domain:GTP-binding [Pseudomonas syringae
           pv. syringae B728a]
          Length = 490

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309
           +R+   I   VEK  + +T   +++A++++ + +                          
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
            +K +   P   DF+ I  +  L+  + +  D H IS+  G G+  L   +++   +   
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISAMHGTGVGNLYQSVQNSFKSAVT 370

Query: 368 KLPFS 372
           + P S
Sbjct: 371 RWPTS 375



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD++L L
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFL 88


>gi|317453535|emb|CBL87877.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|317452845|emb|CBL87858.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|317452831|emb|CBL87851.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806700|gb|ADE42480.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|292806644|gb|ADE42452.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806636|gb|ADE42448.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806534|gb|ADE42397.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806440|gb|ADE42350.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|242255876|gb|ACS88922.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|224535783|ref|ZP_03676322.1| hypothetical protein BACCELL_00647 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522603|gb|EEF91708.1| hypothetical protein BACCELL_00647 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 437

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +ENAD+ +L+
Sbjct: 237 NKVNEDLEYYSVIRSIRSIENADVCILM 264



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGKEFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +DDI E+E  K+  + V+ AD+IL + ++
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDV 92


>gi|210135034|ref|YP_002301473.1| GTP-binding protein EngA [Helicobacter pylori P12]
 gi|238058975|sp|B6JM65|DER_HELP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|210133002|gb|ACJ07993.1| GTP-binding protein-like protein [Helicobacter pylori P12]
          Length = 462

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 29/185 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EII+ G    I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   D
Sbjct: 199 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVD 254

Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFI 323
           TAGIR    I  +EK  ++RT   +E + + LL+ ++++           ++   ++  I
Sbjct: 255 TAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSTPFVELDEKISSLADKHSLGII 314

Query: 324 FIGTKSDL-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKK 368
            I  K D+ Y+ Y E            EY  +I  S      ++E+ +KI  +     K+
Sbjct: 315 LILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKR 374

Query: 369 LPFSI 373
           +P S+
Sbjct: 375 IPTSL 379


>gi|122702623|emb|CAL88501.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702833|emb|CAL88606.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702433|emb|CAL88407.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701327|emb|CAL88053.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|122702267|emb|CAL88324.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701703|emb|CAL88241.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701403|emb|CAL88091.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|99905849|gb|ABF68619.1| YphC [Helicobacter pylori]
 gi|115605761|gb|ABJ15862.1| YphC [Helicobacter pylori]
 gi|122700601|emb|CAL87889.1| GTPase [Helicobacter pylori]
 gi|122700603|emb|CAL87890.1| GTPase [Helicobacter pylori]
 gi|122700611|emb|CAL87894.1| GTPase [Helicobacter pylori]
 gi|122700613|emb|CAL87895.1| GTPase [Helicobacter pylori]
 gi|122700617|emb|CAL87897.1| GTPase [Helicobacter pylori]
 gi|122702639|emb|CAL88509.1| GTPase [Helicobacter pylori]
 gi|122702857|emb|CAL88618.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYV 92


>gi|317453525|emb|CBL87872.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|317452819|emb|CBL87845.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806564|gb|ADE42412.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|289626149|ref|ZP_06459103.1| GTP-binding protein EngA [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649055|ref|ZP_06480398.1| GTP-binding protein EngA [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298486027|ref|ZP_07004101.1| GTP-binding protein EngA [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298159504|gb|EFI00551.1| GTP-binding protein EngA [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330869573|gb|EGH04282.1| GTP-binding protein Der [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 490

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309
           +R+   I   VEK  + +T   +++A++++ + +                          
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
            +K +   P   DF+ I  +  L+  + +  D H IS+  G G+  L   +++   +   
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISALHGTGVGNLYQSVQNSFKSAVT 370

Query: 368 KLPFS 372
           + P S
Sbjct: 371 RWPTS 375



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD++L L
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFL 88


>gi|210612261|ref|ZP_03289209.1| hypothetical protein CLONEX_01409 [Clostridium nexile DSM 1787]
 gi|210151635|gb|EEA82642.1| hypothetical protein CLONEX_01409 [Clostridium nexile DSM 1787]
          Length = 442

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKSS+ N L  ++  IV+D+ GTTRD +   +   G      DTAG+R  
Sbjct: 179 RIAIVGKPNVGKSSIVNKLLGENRVIVSDVAGTTRDAIDTAIKYHGKEYVFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + I   +E+  I RT   VE AD++L++
Sbjct: 239 NKIKEELERYSIIRTVTAVERADVVLMV 266



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  ++        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYAEVTWLDKEFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
            DI+  +  ++  + ++ AD+I+ + ++  
Sbjct: 66  KDIILSQMREQAQIAIDTADVIVFITDVRQ 95


>gi|161869787|ref|YP_001598955.1| GTP-binding protein EngA [Neisseria meningitidis 053442]
 gi|161595340|gb|ABX73000.1| GTP-binding protein engA [Neisseria meningitidis 053442]
          Length = 536

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 230 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 289

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 290 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 323



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 56  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFL 140


>gi|122702139|emb|CAL88260.1| GTPase [Helicobacter pylori]
 gi|317452841|emb|CBL87856.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701693|emb|CAL88236.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702143|emb|CAL88262.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701377|emb|CAL88078.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702263|emb|CAL88322.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700605|emb|CAL87891.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|99905875|gb|ABF68632.1| YphC [Helicobacter pylori]
 gi|122701423|emb|CAL88101.1| GTPase [Helicobacter pylori]
 gi|122701475|emb|CAL88127.1| GTPase [Helicobacter pylori]
 gi|122702479|emb|CAL88430.1| GTPase [Helicobacter pylori]
 gi|122702505|emb|CAL88443.1| GTPase [Helicobacter pylori]
 gi|122702697|emb|CAL88538.1| GTPase [Helicobacter pylori]
 gi|122702753|emb|CAL88566.1| GTPase [Helicobacter pylori]
 gi|292806470|gb|ADE42365.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806532|gb|ADE42396.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806612|gb|ADE42436.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806652|gb|ADE42456.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806678|gb|ADE42469.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|317453519|emb|CBL87869.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|93004278|gb|ABE97059.1| YphC [Helicobacter pylori]
 gi|99905861|gb|ABF68625.1| YphC [Helicobacter pylori]
 gi|122702715|emb|CAL88547.1| GTPase [Helicobacter pylori]
 gi|242255892|gb|ACS88930.1| GTPase [Helicobacter pylori]
 gi|242255896|gb|ACS88932.1| GTPase [Helicobacter pylori]
 gi|242255934|gb|ACS88951.1| GTPase [Helicobacter pylori]
 gi|317453531|emb|CBL87875.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|18075553|emb|CAD11172.1| GTP-binding protein [Helicobacter pylori]
 gi|122700621|emb|CAL87899.1| GTPase [Helicobacter pylori]
 gi|122702467|emb|CAL88424.1| GTPase [Helicobacter pylori]
 gi|122702741|emb|CAL88560.1| GTPase [Helicobacter pylori]
 gi|122702823|emb|CAL88601.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|15837067|ref|NP_297755.1| GTP-binding protein EngA [Xylella fastidiosa 9a5c]
 gi|26006743|sp|Q9PG37|DER_XYLFA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|9105311|gb|AAF83275.1|AE003896_12 GTP-binding protein [Xylella fastidiosa 9a5c]
          Length = 465

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           I  +G  N GKS+L N L  ++  IV+D+PGTTRD +T+DL+ +    ++ DTAG+R   
Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTRDSITVDLERDECRYRLVDTAGLRRKS 240

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           + ++ VEK    +T   +E   + +LL
Sbjct: 241 KVEEAVEKFSAFKTLQVIEQCQVAVLL 267



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 22/164 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           + ++G  N GKS+LFNAL     A+V D PG TRD       ++G  L  + DT G+   
Sbjct: 5   VALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGGMVGK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTK 328
           +D +     ++  L    AD++L +  +               +++S P  +    I   
Sbjct: 65  EDGLAGATARQARLAAAEADVVLFVVNVREGVSALDDDILAWLRKLSQPTLLVINKIDGV 124

Query: 329 SDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNK 365
           SD  +T   E+ H        +S+   +GL++LI ++ + L  +
Sbjct: 125 SD--ATVHSEFAHYGFSDVVPVSAAHRQGLDDLIEQVLAWLPER 166


>gi|330957531|gb|EGH57791.1| GTP-binding protein Der [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 489

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 192 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 251

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309
           +R+   I   VEK  + +T   +++A++++ + +                          
Sbjct: 252 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 311

Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
            +K +   P   DF+ I  +  L+  + +  D H IS+  G G+  L   +++   +   
Sbjct: 312 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISALHGTGVGNLYQSVQNSFKSAVT 369

Query: 368 KLPFS 372
           + P S
Sbjct: 370 RWPTS 374



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  K++ L +E AD++L L
Sbjct: 65  HGMDEKMAKQSLLAIEEADVVLFL 88


>gi|317453509|emb|CBL87864.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806632|gb|ADE42446.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806574|gb|ADE42417.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806546|gb|ADE42403.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|289811471|ref|ZP_06542100.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 119

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 16  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 75

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 76  DGVETRMAEQSLLAIEEADVVLFM 99


>gi|242255918|gb|ACS88943.1| GTPase [Helicobacter pylori]
 gi|242255920|gb|ACS88944.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|242255914|gb|ACS88941.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|269123837|ref|YP_003306414.1| small GTP-binding protein [Streptobacillus moniliformis DSM 12112]
 gi|268315163|gb|ACZ01537.1| small GTP-binding protein [Streptobacillus moniliformis DSM 12112]
          Length = 438

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  I +LG  NAGKSS  N +  K+ +IV+DI GTTRD +    + +G    I DTAGIR
Sbjct: 172 GLSIAVLGRPNAGKSSFVNKILNKERSIVSDIAGTTRDSIDSSFNYDGQKYTIIDTAGIR 231

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305
              + +D +E   + R    ++ A++ +L+
Sbjct: 232 RKSKVEDDIEYYSVLRAVKAIQRANVCVLM 261



 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    ++IV D  G TRD L  + +  G    + DT G+   +
Sbjct: 3   VAIVGRPNVGKSTLFNKLIGDRLSIVKDEIGVTRDRLYRETEWSGKKFLLVDTGGLEPRS 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +D +  +   +  + ++ AD I+ L
Sbjct: 63  NDFMMNKIKDQARVAIDEADSIIFL 87


>gi|237709649|ref|ZP_04540130.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|265754281|ref|ZP_06089470.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229456285|gb|EEO62006.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263234990|gb|EEZ20545.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 396

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 8/121 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   + + G  N+GKSSL NAL  +D A+V+DIPGTT D ++  ++++G       DT G
Sbjct: 10  NRLHVALFGRRNSGKSSLINALTGQDTALVSDIPGTTTDTVSKAMEIQGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFIGTKSD 330
             +  ++ E   I RT   +E  D+ LLL E  + +E          KNI  I +  K+D
Sbjct: 70  FDDEGELGEMR-IIRTLKAIERTDIALLLCEDEAHEEEKKWMKQLEEKNIPVILLLNKAD 128

Query: 331 L 331
           +
Sbjct: 129 I 129


>gi|261365613|ref|ZP_05978496.1| ribosome-associated GTPase EngA [Neisseria mucosa ATCC 25996]
 gi|288565845|gb|EFC87405.1| ribosome-associated GTPase EngA [Neisseria mucosa ATCC 25996]
          Length = 485

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|122702699|emb|CAL88539.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702399|emb|CAL88390.1| GTPase [Helicobacter pylori]
 gi|122702503|emb|CAL88442.1| GTPase [Helicobacter pylori]
 gi|122702831|emb|CAL88605.1| GTPase [Helicobacter pylori]
 gi|195954199|gb|ACG58805.1| YphC [Helicobacter pylori]
 gi|195954201|gb|ACG58806.1| YphC [Helicobacter pylori]
 gi|195954203|gb|ACG58807.1| YphC [Helicobacter pylori]
 gi|195954213|gb|ACG58812.1| YphC [Helicobacter pylori]
 gi|195954221|gb|ACG58816.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701373|emb|CAL88076.1| GTPase [Helicobacter pylori]
 gi|122702783|emb|CAL88581.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701687|emb|CAL88233.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701459|emb|CAL88119.1| GTPase [Helicobacter pylori]
 gi|122701697|emb|CAL88238.1| GTPase [Helicobacter pylori]
 gi|122702709|emb|CAL88544.1| GTPase [Helicobacter pylori]
 gi|242255954|gb|ACS88961.1| GTPase [Helicobacter pylori]
 gi|292806420|gb|ADE42340.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806432|gb|ADE42346.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806488|gb|ADE42374.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806530|gb|ADE42395.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806648|gb|ADE42454.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806658|gb|ADE42459.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702175|emb|CAL88278.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701451|emb|CAL88115.1| GTPase [Helicobacter pylori]
 gi|242255898|gb|ACS88933.1| GTPase [Helicobacter pylori]
 gi|242255932|gb|ACS88950.1| GTPase [Helicobacter pylori]
 gi|292806698|gb|ADE42479.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701611|emb|CAL88195.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700807|emb|CAL87992.1| GTPase [Helicobacter pylori]
 gi|122700837|emb|CAL88007.1| GTPase [Helicobacter pylori]
 gi|122702163|emb|CAL88272.1| GTPase [Helicobacter pylori]
 gi|122702469|emb|CAL88425.1| GTPase [Helicobacter pylori]
 gi|242255966|gb|ACS88967.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700701|emb|CAL87939.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122700607|emb|CAL87892.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYV 92


>gi|122700615|emb|CAL87896.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|18075579|emb|CAD11185.1| GTP-binding protein [Helicobacter pylori]
 gi|122702797|emb|CAL88588.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|4467657|emb|CAB37780.1| GTP-binding protein homologue [Helicobacter pylori]
 gi|122701615|emb|CAL88197.1| GTPase [Helicobacter pylori]
 gi|122701685|emb|CAL88232.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|330894498|gb|EGH27159.1| GTP-binding protein Der [Pseudomonas syringae pv. mori str. 301020]
          Length = 490

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309
           +R+   I   VEK  + +T   +++A++++ + +                          
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
            +K +   P   DF+ I  +  L+  + +  D H IS+  G G+  L   +++   +   
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISAMHGTGVGNLYQSVQNSFKSAVT 370

Query: 368 KLPFS 372
           + P S
Sbjct: 371 RWPTS 375



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L ++ AD++L L
Sbjct: 65  HGMDEKMAEQSLLAIKEADVVLFL 88


>gi|292806474|gb|ADE42367.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|292806418|gb|ADE42339.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702647|emb|CAL88513.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702489|emb|CAL88435.1| GTPase [Helicobacter pylori]
 gi|122702495|emb|CAL88438.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702483|emb|CAL88432.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701417|emb|CAL88098.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701583|emb|CAL88181.1| GTPase [Helicobacter pylori]
 gi|122702269|emb|CAL88325.1| GTPase [Helicobacter pylori]
 gi|292806628|gb|ADE42444.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806638|gb|ADE42449.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|115605759|gb|ABJ15861.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|93004276|gb|ABE97058.1| YphC [Helicobacter pylori]
 gi|122700717|emb|CAL87947.1| GTPase [Helicobacter pylori]
 gi|122701717|emb|CAL88248.1| GTPase [Helicobacter pylori]
 gi|122702179|emb|CAL88280.1| GTPase [Helicobacter pylori]
 gi|195954219|gb|ACG58815.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|18075593|emb|CAD11192.1| GTP-binding protein [Helicobacter pylori]
 gi|99905869|gb|ABF68629.1| YphC [Helicobacter pylori]
 gi|122700765|emb|CAL87971.1| GTPase [Helicobacter pylori]
 gi|122700825|emb|CAL88001.1| GTPase [Helicobacter pylori]
 gi|122701713|emb|CAL88246.1| GTPase [Helicobacter pylori]
 gi|122701715|emb|CAL88247.1| GTPase [Helicobacter pylori]
 gi|122702333|emb|CAL88357.1| GTPase [Helicobacter pylori]
 gi|122702499|emb|CAL88440.1| GTPase [Helicobacter pylori]
 gi|122702553|emb|CAL88466.1| GTPase [Helicobacter pylori]
 gi|122702679|emb|CAL88529.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|319410209|emb|CBY90548.1| GTP-binding protein engA [Neisseria meningitidis WUE 2594]
          Length = 536

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 230 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 289

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 290 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 323



 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 56  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFL 140


>gi|317452851|emb|CBL87861.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806642|gb|ADE42451.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806548|gb|ADE42404.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806460|gb|ADE42360.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|260773381|ref|ZP_05882297.1| GTP-binding protein EngA [Vibrio metschnikovii CIP 69.14]
 gi|260612520|gb|EEX37723.1| GTP-binding protein EngA [Vibrio metschnikovii CIP 69.14]
          Length = 496

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 209 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDDREYVLIDTAGVRRR 268

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 269 KSINETVEKFSVVKTLKAIEDANVVLLV--IDARENIS 304



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L      + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGENEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFM 88


>gi|242255890|gb|ACS88929.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122702491|emb|CAL88436.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702689|emb|CAL88534.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702535|emb|CAL88457.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|122702261|emb|CAL88321.1| GTPase [Helicobacter pylori]
 gi|122702271|emb|CAL88326.1| GTPase [Helicobacter pylori]
 gi|122702339|emb|CAL88360.1| GTPase [Helicobacter pylori]
 gi|122702375|emb|CAL88378.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701355|emb|CAL88067.1| GTPase [Helicobacter pylori]
 gi|122702169|emb|CAL88275.1| GTPase [Helicobacter pylori]
 gi|122702319|emb|CAL88350.1| GTPase [Helicobacter pylori]
 gi|122702421|emb|CAL88401.1| GTPase [Helicobacter pylori]
 gi|122702587|emb|CAL88483.1| GTPase [Helicobacter pylori]
 gi|292806660|gb|ADE42460.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701469|emb|CAL88124.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701581|emb|CAL88180.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S ++I      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                 ++S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYVFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122702167|emb|CAL88274.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701337|emb|CAL88058.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701647|emb|CAL88213.1| GTPase [Helicobacter pylori]
 gi|122701655|emb|CAL88217.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702211|emb|CAL88296.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700905|emb|CAL88041.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700767|emb|CAL87972.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|122700733|emb|CAL87955.1| GTPase [Helicobacter pylori]
 gi|122702349|emb|CAL88365.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700633|emb|CAL87905.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKSLNLKAAQMSDLIL 90


>gi|4467667|emb|CAB37785.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKSLNLKAAQMSDLIL 90


>gi|18075595|emb|CAD11193.1| GTP-binding protein [Helicobacter pylori]
 gi|18075597|emb|CAD11194.1| GTP-binding protein [Helicobacter pylori]
 gi|18075599|emb|CAD11195.1| GTP-binding protein [Helicobacter pylori]
 gi|122700747|emb|CAL87962.1| GTPase [Helicobacter pylori]
 gi|122700749|emb|CAL87963.1| GTPase [Helicobacter pylori]
 gi|122700755|emb|CAL87966.1| GTPase [Helicobacter pylori]
 gi|122700761|emb|CAL87969.1| GTPase [Helicobacter pylori]
 gi|122700795|emb|CAL87986.1| GTPase [Helicobacter pylori]
 gi|122700801|emb|CAL87989.1| GTPase [Helicobacter pylori]
 gi|122700803|emb|CAL87990.1| GTPase [Helicobacter pylori]
 gi|122700817|emb|CAL87997.1| GTPase [Helicobacter pylori]
 gi|122700851|emb|CAL88014.1| GTPase [Helicobacter pylori]
 gi|122700877|emb|CAL88027.1| GTPase [Helicobacter pylori]
 gi|122700923|emb|CAL88050.1| GTPase [Helicobacter pylori]
 gi|122701535|emb|CAL88157.1| GTPase [Helicobacter pylori]
 gi|122701673|emb|CAL88226.1| GTPase [Helicobacter pylori]
 gi|122701681|emb|CAL88230.1| GTPase [Helicobacter pylori]
 gi|122701691|emb|CAL88235.1| GTPase [Helicobacter pylori]
 gi|122702245|emb|CAL88313.1| GTPase [Helicobacter pylori]
 gi|122702295|emb|CAL88338.1| GTPase [Helicobacter pylori]
 gi|122702317|emb|CAL88349.1| GTPase [Helicobacter pylori]
 gi|122702331|emb|CAL88356.1| GTPase [Helicobacter pylori]
 gi|122702363|emb|CAL88372.1| GTPase [Helicobacter pylori]
 gi|122702365|emb|CAL88373.1| GTPase [Helicobacter pylori]
 gi|122702381|emb|CAL88381.1| GTPase [Helicobacter pylori]
 gi|122702383|emb|CAL88382.1| GTPase [Helicobacter pylori]
 gi|122702431|emb|CAL88406.1| GTPase [Helicobacter pylori]
 gi|122702449|emb|CAL88415.1| GTPase [Helicobacter pylori]
 gi|122702477|emb|CAL88429.1| GTPase [Helicobacter pylori]
 gi|122702525|emb|CAL88452.1| GTPase [Helicobacter pylori]
 gi|122702825|emb|CAL88602.1| GTPase [Helicobacter pylori]
 gi|292806442|gb|ADE42351.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806484|gb|ADE42372.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806506|gb|ADE42383.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|317453523|emb|CBL87871.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806640|gb|ADE42450.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806634|gb|ADE42447.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806448|gb|ADE42354.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|291543597|emb|CBL16706.1| ribosome-associated GTPase EngA [Ruminococcus sp. 18P13]
          Length = 442

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 5/89 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K+ ++G  NAGKSSL N +A ++  IV+DI GTTRD   T+  + +G  V I DTAGIR+
Sbjct: 179 KVAVIGKPNAGKSSLINKIAGEERVIVSDIAGTTRDATDTVVENEQGKFVFI-DTAGIRK 237

Query: 280 TDDIVEKE---GIKRTFLEVENADLILLL 305
              I E+     + R ++ V+ AD+ +++
Sbjct: 238 KSRITERVEHFSVLRAYMAVDRADVCIIM 266



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + ++IV D PG TRD +    +  G    + DT GI  +T
Sbjct: 6   VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYSKCEWRGREFMVVDTGGIEPDT 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           DD++  +  ++  + +  AD+I+L+ ++
Sbjct: 66  DDVILAQMRRQAEVAIHRADVIVLVTDV 93


>gi|242255842|gb|ACS88905.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702521|emb|CAL88450.1| GTPase [Helicobacter pylori]
 gi|122702585|emb|CAL88482.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702687|emb|CAL88533.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702789|emb|CAL88584.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702567|emb|CAL88473.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702881|emb|CAL88630.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702455|emb|CAL88418.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702341|emb|CAL88361.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701595|emb|CAL88187.1| GTPase [Helicobacter pylori]
 gi|122702771|emb|CAL88575.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702147|emb|CAL88264.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700737|emb|CAL87957.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|115605755|gb|ABJ15859.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|99905865|gb|ABF68627.1| YphC [Helicobacter pylori]
 gi|122702641|emb|CAL88510.1| GTPase [Helicobacter pylori]
 gi|242255928|gb|ACS88948.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|93004280|gb|ABE97060.1| YphC [Helicobacter pylori]
 gi|122700815|emb|CAL87996.1| GTPase [Helicobacter pylori]
 gi|122700849|emb|CAL88013.1| GTPase [Helicobacter pylori]
 gi|122700873|emb|CAL88025.1| GTPase [Helicobacter pylori]
 gi|122702547|emb|CAL88463.1| GTPase [Helicobacter pylori]
 gi|292806580|gb|ADE42420.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|317452829|emb|CBL87850.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|320536777|ref|ZP_08036777.1| ribosome-associated GTPase EngA [Treponema phagedenis F0421]
 gi|320146373|gb|EFW37989.1| ribosome-associated GTPase EngA [Treponema phagedenis F0421]
          Length = 473

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  ++ +LG  N GKS+L N L K   +IV+DI GTTRDV+  +   +G    ++DTAGI
Sbjct: 203 NTIRLALLGKPNTGKSTLANYLTKSSASIVSDIAGTTRDVVHGNFSYKGMHFVLADTAGI 262

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R+ + +   +E   + R    +++ D++  L
Sbjct: 263 RKKNKVTAGIEYYSVLRAIKSLDSTDIVFYL 293



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 10/108 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           IVI+G  N GKS+LFN   +K  AI   + G TRD +     + G  V++ DT G + T 
Sbjct: 28  IVIVGRPNVGKSTLFNRFLRKRRAITDSVQGVTRDPIEEQAIVNGLPVRLMDTGGFKLTR 87

Query: 281 -----DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
                +D+++   +++T   +E AD ILLL +       + P++ +FI
Sbjct: 88  SGLQDEDVMDSLVVEKTIEALERADRILLLLDAGH----ALPEDEEFI 131


>gi|319794354|ref|YP_004155994.1| ribosome-associated GTPase enga [Variovorax paradoxus EPS]
 gi|315596817|gb|ADU37883.1| ribosome-associated GTPase EngA [Variovorax paradoxus EPS]
          Length = 447

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG+R  
Sbjct: 182 KLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQRFELIDTAGLRRK 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +E+A+++LLL
Sbjct: 242 GKVFEAIEKFSVVKTLQAIESANVVLLL 269



 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L +   AIV D  G TRD    +  L  +   + DT G   + 
Sbjct: 5   VALVGRPNVGKSTLFNRLTQTRDAIVADYAGLTRDRHYGNGRLGKHEFIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
              + KE  K+T   V  AD+++ +
Sbjct: 65  GSGIYKEMAKQTRQAVAEADVVIFV 89


>gi|298480725|ref|ZP_06998921.1| GTP-binding protein [Bacteroides sp. D22]
 gi|298273159|gb|EFI14724.1| GTP-binding protein [Bacteroides sp. D22]
          Length = 396

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 18/166 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D+A+V++ PGTT D+++  ++++G       DT G
Sbjct: 10  NRLHITLFGRRNSGKSSLINALTGQDIALVSNTPGTTTDLVSKAMEIQGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISF---PKNIDFIFIGTK-- 328
             +  ++ E   I RT   +E  D+ LLL E  +   +KEI      KNI  I +  K  
Sbjct: 70  FDDEGELGELR-ISRTLKAIEKTDIALLLCEDTTFFHEKEILALLKEKNIPVIPVLNKID 128

Query: 329 ----SDLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKF 366
               SD  +TY EE    +  LIS+    G+E +   I   L + F
Sbjct: 129 IRENSDHLATYIEEQCKIHPLLISAKEKIGIELIRQAILEKLPSDF 174


>gi|261417942|ref|YP_003251624.1| GTP-binding protein EngA [Geobacillus sp. Y412MC61]
 gi|297529610|ref|YP_003670885.1| ribosome-associated GTPase EngA [Geobacillus sp. C56-T3]
 gi|319767246|ref|YP_004132747.1| ribosome-associated GTPase EngA [Geobacillus sp. Y412MC52]
 gi|261374399|gb|ACX77142.1| ribosome-associated GTPase EngA [Geobacillus sp. Y412MC61]
 gi|297252862|gb|ADI26308.1| ribosome-associated GTPase EngA [Geobacillus sp. C56-T3]
 gi|317112112|gb|ADU94604.1| ribosome-associated GTPase EngA [Geobacillus sp. Y412MC52]
          Length = 436

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L + +  H  +G   E   +  K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +
Sbjct: 155 LLDAVVRHFPKGGGQEYEEDVIKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAV 214

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
                 EG    I DTAG+R+   I    EK  + R    +E +D++L++
Sbjct: 215 DTSFVREGQEYVIIDTAGMRKRGKIYESTEKYSVLRALRAIERSDVVLVV 264



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSRAEWLNHSFYLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +  +  ++  + ++ AD+I+ +
Sbjct: 66  EPLLVQIRQQAEIAIDEADVIIFM 89


>gi|122702367|emb|CAL88374.1| GTPase [Helicobacter pylori]
 gi|122702395|emb|CAL88388.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701649|emb|CAL88214.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700609|emb|CAL87893.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700697|emb|CAL87937.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700657|emb|CAL87917.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|18075583|emb|CAD11187.1| GTP-binding protein [Helicobacter pylori]
 gi|122702811|emb|CAL88595.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKAFNLKAAQMSDLILYV 92


>gi|56420756|ref|YP_148074.1| GTP-binding protein EngA [Geobacillus kaustophilus HTA426]
 gi|81819681|sp|Q5KXT0|DER_GEOKA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|56380598|dbj|BAD76506.1| GTP-binding protein [Geobacillus kaustophilus HTA426]
          Length = 436

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L + +  H  +G   E   +  K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +
Sbjct: 155 LLDAVVRHFPKGGGQEYEEDVIKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAV 214

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
                 EG    I DTAG+R+   I    EK  + R    +E +D++L++
Sbjct: 215 DTSFVREGQEYVIIDTAGMRKRGKIYESTEKYSVLRALRAIERSDVVLVV 264



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSRAEWLNHSFYLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +  +  ++  + ++ AD+I+ +
Sbjct: 66  EPLLVQIRQQAEIAIDEADVIIFM 89


>gi|28868645|ref|NP_791264.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213971514|ref|ZP_03399625.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato T1]
 gi|301386119|ref|ZP_07234537.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato Max13]
 gi|302060181|ref|ZP_07251722.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato K40]
 gi|302135124|ref|ZP_07261114.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|37999588|sp|Q886Y6|DER_PSESM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|28851883|gb|AAO54959.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213923706|gb|EEB57290.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato T1]
 gi|330872875|gb|EGH07024.1| GTP-binding protein Der [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330965919|gb|EGH66179.1| GTP-binding protein Der [Pseudomonas syringae pv. actinidiae str.
           M302091]
 gi|331019376|gb|EGH99432.1| GTP-binding protein Der [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 489

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 192 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 251

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309
           +R+   I   VEK  + +T   +++A++++ + +                          
Sbjct: 252 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 311

Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
            +K +   P   DF+ I  +  L+  + +  D H IS+  G G+  L   +++   +   
Sbjct: 312 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISALHGTGVGNLYQSVQNSFKSAVT 369

Query: 368 KLPFS 372
           + P S
Sbjct: 370 RWPTS 374



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD++L L
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFL 88


>gi|332879048|ref|ZP_08446757.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332682997|gb|EGJ55885.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 437

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSSL NA   ++  IVTDI GTTRD +       G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSLINAFIGEERNIVTDIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRK 236

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
           + + E      + R+   +EN+D+ +L+
Sbjct: 237 NKVTEDLEYYSVMRSIRAIENSDVCILM 264



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L +   AIV+D  GTTRD      +  G    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTQTRHAIVSDEAGTTRDRQYGKSEWTGREFSVIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             +DDI E+E  K+  L  E AD+IL L ++ +
Sbjct: 62  VNSDDIFEEEIRKQVTLATEEADVILFLVDVRN 94


>gi|255065190|ref|ZP_05317045.1| ribosome-associated GTPase EngA [Neisseria sicca ATCC 29256]
 gi|255050611|gb|EET46075.1| ribosome-associated GTPase EngA [Neisseria sicca ATCC 29256]
          Length = 535

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 229 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 288

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 289 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 322



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 55  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGFEPVV 114

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+TF  V+ AD ++ L
Sbjct: 115 DSGILHEMAKQTFQAVDEADAVVFL 139


>gi|122702733|emb|CAL88556.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702731|emb|CAL88555.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  TLLSKEIKALNLKAAQMSDLIL 90


>gi|122702459|emb|CAL88420.1| GTPase [Helicobacter pylori]
 gi|292806608|gb|ADE42434.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701369|emb|CAL88074.1| GTPase [Helicobacter pylori]
 gi|122701407|emb|CAL88093.1| GTPase [Helicobacter pylori]
 gi|122701441|emb|CAL88110.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702157|emb|CAL88269.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S ++I      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S+L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSVL 166


>gi|122700781|emb|CAL87979.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700901|emb|CAL88039.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700857|emb|CAL88017.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700641|emb|CAL87909.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKTAQMSDLIL 90


>gi|122700721|emb|CAL87949.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S +++      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVL 166


>gi|122700729|emb|CAL87953.1| GTPase [Helicobacter pylori]
 gi|122701679|emb|CAL88229.1| GTPase [Helicobacter pylori]
 gi|122702581|emb|CAL88480.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700629|emb|CAL87903.1| GTPase [Helicobacter pylori]
 gi|122700703|emb|CAL87940.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|115486387|ref|NP_001068337.1| Os11g0638000 [Oryza sativa Japonica Group]
 gi|113645559|dbj|BAF28700.1| Os11g0638000 [Oryza sativa Japonica Group]
          Length = 315

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +   E G   K+ DTAGIR  
Sbjct: 25  IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRR 84

Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307
             +       E   +KR F  +  +D++ L+ E
Sbjct: 85  AAVASAGSTTETLSVKRAFRAIRRSDVVALVVE 117


>gi|93004284|gb|ABE97062.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|18075563|emb|CAD11177.1| GTP-binding protein [Helicobacter pylori]
 gi|122702795|emb|CAL88587.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|315123111|ref|YP_004065117.1| GTP-binding protein EngA [Pseudoalteromonas sp. SM9913]
 gi|315016872|gb|ADT70209.1| GTP-binding protein EngA [Pseudoalteromonas sp. SM9913]
          Length = 489

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD      + +G+   + DT GI  ++
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGFEFIVVDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E E   ++ L +E AD++L L
Sbjct: 65  EGIETEMADQSLLAIEEADIVLFL 88



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  +D  IV D+PGTTRD + I +        + DTAG+R  
Sbjct: 203 KLAIIGRPNVGKSTLTNRILGEDRVIVYDMPGTTRDSIYIPMTRNDKEYILIDTAGVRKR 262

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  D+VEK  + +T   +E+ +++LL+  ++++  IS
Sbjct: 263 KKVSDVVEKFSVIKTLQAIEDCNVVLLV--VDARDGIS 298


>gi|122702475|emb|CAL88428.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702837|emb|CAL88608.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702739|emb|CAL88559.1| GTPase [Helicobacter pylori]
 gi|292806494|gb|ADE42377.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702549|emb|CAL88464.1| GTPase [Helicobacter pylori]
 gi|292806680|gb|ADE42470.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|317452843|emb|CBL87857.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701329|emb|CAL88054.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701633|emb|CAL88206.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701479|emb|CAL88129.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700879|emb|CAL88028.1| GTPase [Helicobacter pylori]
 gi|122701623|emb|CAL88201.1| GTPase [Helicobacter pylori]
 gi|122701677|emb|CAL88228.1| GTPase [Helicobacter pylori]
 gi|122702155|emb|CAL88268.1| GTPase [Helicobacter pylori]
 gi|122702241|emb|CAL88311.1| GTPase [Helicobacter pylori]
 gi|122702369|emb|CAL88375.1| GTPase [Helicobacter pylori]
 gi|122702397|emb|CAL88389.1| GTPase [Helicobacter pylori]
 gi|122702511|emb|CAL88446.1| GTPase [Helicobacter pylori]
 gi|317453543|emb|CBL87881.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700713|emb|CAL87945.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700673|emb|CAL87925.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +   K I S +++      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKATQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|325268712|ref|ZP_08135341.1| ribosome-associated GTPase EngA [Prevotella multiformis DSM 16608]
 gi|324988956|gb|EGC20910.1| ribosome-associated GTPase EngA [Prevotella multiformis DSM 16608]
          Length = 437

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRRK 236

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
           + + E      + R+   +EN+D+ +L+
Sbjct: 237 NKVTEDLEFYSVMRSIRSIENSDVCILM 264



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI E    K+  +  E ADL+L L
Sbjct: 65  DDIFEDAIRKQVLVATEEADLVLFL 89


>gi|317453513|emb|CBL87866.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|317452839|emb|CBL87855.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|325106044|ref|YP_004275698.1| ribosome-associated GTPase EngA [Pedobacter saltans DSM 12145]
 gi|324974892|gb|ADY53876.1| ribosome-associated GTPase EngA [Pedobacter saltans DSM 12145]
          Length = 433

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSS+ NAL  KD  IVT++ GTTRD + I     G+   + DTAG+R+   +
Sbjct: 178 IVGRPNVGKSSMINALLGKDRNIVTNVAGTTRDSIHIHYKQFGHDFMLVDTAGLRKKTKV 237

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
              +E   + RT   +E AD+I+L+
Sbjct: 238 RENIEFYSVMRTIGALEEADVIILM 262



 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+L+N L +   AIV D+ G TRD      +       + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLYNRLTETRKAIVDDMSGVTRDRHYGLAEWTDKTFTVIDTGGYV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             ++DI E    ++  + +E A  I+ + ++ +
Sbjct: 62  ANSEDIFEIAIREQVLIAIEEATAIIFMVDVTT 94


>gi|292806436|gb|ADE42348.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|242255912|gb|ACS88940.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|308189713|ref|YP_003922644.1| GTP-binding protein [Mycoplasma fermentans JER]
 gi|319776899|ref|YP_004136550.1| gtp-binding protein enga [Mycoplasma fermentans M64]
 gi|238809685|dbj|BAH69475.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624455|gb|ADN68760.1| GTP-binding protein [Mycoplasma fermentans JER]
 gi|318037974|gb|ADV34173.1| GTP-binding protein engA [Mycoplasma fermentans M64]
          Length = 435

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 64/99 (64%), Gaps = 5/99 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
           +K+ I+G  N+GKSS+ N LA ++ +IV+DI GTTRD +   + ++  + +I DTAGI  
Sbjct: 172 FKLSIIGRPNSGKSSMLNRLANENRSIVSDIAGTTRDSVKSIVKIKDEVFEIIDTAGITR 231

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             + +D V+   +KR    ++ ++L L+L  I+S +E+S
Sbjct: 232 KSKIEDSVDHYALKRAMSSLDESNLSLVL--IDSTQELS 268



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  K  +I+ D PG TRD L       G  +K+ DT GI E +
Sbjct: 6   IAIIGKPNVGKSTLFNRLIGKRSSIIYDRPGVTRDRLYETFSWNGKEIKVIDTGGI-EIE 64

Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305
           +   +E I+ +  + +E A++I+ +
Sbjct: 65  NRPFQEHIQIQAKIAIEEANVIIFM 89


>gi|229822882|ref|ZP_04448952.1| hypothetical protein GCWU000282_00172 [Catonella morbi ATCC 51271]
 gi|229787695|gb|EEP23809.1| hypothetical protein GCWU000282_00172 [Catonella morbi ATCC 51271]
          Length = 437

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 30/183 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K   +G  N GKSSL NA+ K++  IV++I GTTR+ +     D EG    + DTAGIR+
Sbjct: 177 KFCFIGRPNVGKSSLVNAILKEERVIVSNIEGTTREAVDTHFTDEEGTRYTMIDTAGIRK 236

Query: 280 TDDI---VEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTK 328
              +    EK  + R    +E +D++ L       ++E + K    ++      + +  K
Sbjct: 237 RGKVYENTEKYSVLRAMSAIERSDIVCLVLDAETGIREQDKKVAGYAYEAGKGMVILVNK 296

Query: 329 SD-------LYSTYTEE----YDHL-------ISSFTGEGLEELINKIKSILSNKFKKLP 370
            D       L+ T+T+E    + +L       +S+ TG+ L +L   +K+I  N+ +++ 
Sbjct: 297 WDAVDKSDKLFETFTKEIRAHFQYLTFAPILFVSAHTGQRLNKLPELLKTIYDNRHRRIQ 356

Query: 371 FSI 373
            S+
Sbjct: 357 SSV 359



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN L  + ++IV D PG TRD +       G   ++ DT GI   D
Sbjct: 6   VALVGRPNVGKSTIFNRLVGERLSIVEDYPGVTRDRIYATGKWLGREFRVIDTGGIDMID 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
           + +  +   +  + +E AD+I+ L  + 
Sbjct: 66  EPLMDQVRYQADIAMEEADVIVFLTSMQ 93


>gi|122702703|emb|CAL88541.1| GTPase [Helicobacter pylori]
 gi|292806446|gb|ADE42353.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702663|emb|CAL88521.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701357|emb|CAL88068.1| GTPase [Helicobacter pylori]
 gi|122701537|emb|CAL88158.1| GTPase [Helicobacter pylori]
 gi|292806600|gb|ADE42430.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701689|emb|CAL88234.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701351|emb|CAL88065.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702265|emb|CAL88323.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702135|emb|CAL88258.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700779|emb|CAL87978.1| GTPase [Helicobacter pylori]
 gi|122700875|emb|CAL88026.1| GTPase [Helicobacter pylori]
 gi|122701457|emb|CAL88118.1| GTPase [Helicobacter pylori]
 gi|122701471|emb|CAL88125.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|18075585|emb|CAD11188.1| GTP-binding protein [Helicobacter pylori]
 gi|122700727|emb|CAL87952.1| GTPase [Helicobacter pylori]
 gi|122700751|emb|CAL87964.1| GTPase [Helicobacter pylori]
 gi|122700921|emb|CAL88049.1| GTPase [Helicobacter pylori]
 gi|122702487|emb|CAL88434.1| GTPase [Helicobacter pylori]
 gi|122702583|emb|CAL88481.1| GTPase [Helicobacter pylori]
 gi|292806536|gb|ADE42398.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|71735846|ref|YP_273582.1| GTP-binding protein EngA [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257487194|ref|ZP_05641235.1| GTP-binding protein EngA [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|123637657|sp|Q48LZ0|DER_PSE14 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|71556399|gb|AAZ35610.1| GTP-binding protein engA [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320322917|gb|EFW79007.1| GTP-binding protein EngA [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329960|gb|EFW85948.1| GTP-binding protein EngA [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330985018|gb|EGH83121.1| GTP-binding protein Der [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331009189|gb|EGH89245.1| GTP-binding protein Der [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 490

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309
           +R+   I   VEK  + +T   +++A++++ + +                          
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
            +K +   P   DF+ I  +  L+  + +  D H IS+  G G+  L   +++   +   
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISAMHGTGVGNLYQSVQNSFKSAVT 370

Query: 368 KLPFS 372
           + P S
Sbjct: 371 RWPTS 375



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD++L L
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFL 88


>gi|116620165|ref|YP_822321.1| GTP-binding protein EngA [Candidatus Solibacter usitatus Ellin6076]
 gi|116223327|gb|ABJ82036.1| small GTP-binding protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 441

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G K+ I+G  N GKS+L NAL   D AIV+ I GTTRD +   +  +G      DTAGIR
Sbjct: 181 GIKVAIIGRPNVGKSTLLNALTGADRAIVSPIAGTTRDAVDETVSHDGQEYVFVDTAGIR 240

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305
              +T D+ EK  +      +  A ++LL+
Sbjct: 241 RKGKTHDMAEKLSVVMARRHIRMAHVVLLV 270



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +VI+G  N GKS+LFN +  +  AIV D PG TRD L    + +G   ++ DT GI   D
Sbjct: 8   VVIVGRPNVGKSTLFNRITGQRRAIVGDEPGITRDRLHGAAEHDGRHFELIDTGGIVVHD 67

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            + +  + +K+    ++ AD I+ L  ++ + EI+
Sbjct: 68  QEYIPAQILKQAEFALKAADHIIFL--VDGRAEIT 100


>gi|292806498|gb|ADE42379.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806480|gb|ADE42370.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|292806434|gb|ADE42347.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|242255922|gb|ACS88945.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|152993507|ref|YP_001359228.1| GTP-binding protein EngA [Sulfurovum sp. NBC37-1]
 gi|151425368|dbj|BAF72871.1| GTP-binding protein, Era/ThdF family [Sulfurovum sp. NBC37-1]
          Length = 467

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 2/90 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   + I+G  N GKSSL NAL  ++ ++V+D+ GTT D +   ++   Y +   DTAGI
Sbjct: 201 NKISVAIIGRVNTGKSSLLNALLGEERSVVSDVAGTTIDPIDETIEHNDYEITFVDTAGI 260

Query: 278 RETDDIV--EKEGIKRTFLEVENADLILLL 305
           R+   IV  EK  + RT   +E AD+ LL+
Sbjct: 261 RKRSKIVGIEKYALGRTEAMLEKADIALLI 290



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 7/64 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV----LTIDLDLEGYLVKISD 273
           N  K+ ILG  N GKSSLFN LA++  AI +D+ GTTRD+    +TI  + E    ++ D
Sbjct: 5   NLTKVAILGRPNVGKSSLFNRLARQRDAITSDVSGTTRDIKKRLVTISGNRE---FEVID 61

Query: 274 TAGI 277
           T GI
Sbjct: 62  TGGI 65


>gi|147677317|ref|YP_001211532.1| GTPase [Pelotomaculum thermopropionicum SI]
 gi|146273414|dbj|BAF59163.1| predicted GTPase [Pelotomaculum thermopropionicum SI]
          Length = 411

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 61/103 (59%), Gaps = 7/103 (6%)

Query: 207 ISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-L 264
           +S G L E  R     I I G  NAGKSSL NAL  +++AIV+D+PGTT D +   ++ L
Sbjct: 1   MSVGSLNETPRGSRLHIAIFGRRNAGKSSLINALTNQNIAIVSDVPGTTTDPVYKSMEIL 60

Query: 265 EGYLVKISDTAGIRETDDIVE--KEGIKRTFLEVENADLILLL 305
               V I DTAGI   DD+ E  +  +K+T   +  ADL++L+
Sbjct: 61  PVGPVVIIDTAGI---DDVGELGQLRVKKTIGVLNKADLMVLV 100


>gi|122701415|emb|CAL88097.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700775|emb|CAL87976.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|114798294|ref|YP_759502.1| GTP-binding protein EngA [Hyphomonas neptunium ATCC 15444]
 gi|122942672|sp|Q0C441|DER_HYPNA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|114738468|gb|ABI76593.1| GTP-binding protein EngA [Hyphomonas neptunium ATCC 15444]
          Length = 510

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 18/161 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           K+ I+G  N GKS+LFN L  K +A+V D PG TRD    D  L    + + DTAG    
Sbjct: 4   KLAIVGRPNVGKSTLFNRLVGKKIALVDDQPGVTRDRKMADGRLASLPLSLIDTAGFDNV 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDL 331
            DD +E     +T   +  ADL+L L +     + ++ +F       NI  +    K++ 
Sbjct: 64  NDDSLEARMRAQTEAAIAEADLVLFLVDARVGVTPEDETFAGLLRKANIPVVLAANKAEG 123

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
            +     +D           +S+  GEG+ EL   I++ L 
Sbjct: 124 RAGEAGVFDAFRLGFGEPVGLSAEHGEGMAELYESIRNALG 164



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N L + D  +     G TRD +T++ + EG  +++ DTAG+R  
Sbjct: 231 RLAIVGRPNAGKSTLINQLLQSDRMLTGPEAGITRDSITVNWEWEGRQIRLVDTAGLRRK 290

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKE 313
           + +   +E+     T   ++ AD++ L+ + +   E
Sbjct: 291 NKVQERLERMSTAETIRSLKYADIVALVMDAHEAME 326


>gi|18075581|emb|CAD11186.1| GTP-binding protein [Helicobacter pylori]
 gi|122702305|emb|CAL88343.1| GTPase [Helicobacter pylori]
 gi|122702307|emb|CAL88344.1| GTPase [Helicobacter pylori]
 gi|122702321|emb|CAL88351.1| GTPase [Helicobacter pylori]
 gi|122702353|emb|CAL88367.1| GTPase [Helicobacter pylori]
 gi|122702799|emb|CAL88589.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|18075587|emb|CAD11189.1| GTP-binding protein [Helicobacter pylori]
 gi|18075589|emb|CAD11190.1| GTP-binding protein [Helicobacter pylori]
 gi|18075591|emb|CAD11191.1| GTP-binding protein [Helicobacter pylori]
 gi|122700753|emb|CAL87965.1| GTPase [Helicobacter pylori]
 gi|122700759|emb|CAL87968.1| GTPase [Helicobacter pylori]
 gi|122700763|emb|CAL87970.1| GTPase [Helicobacter pylori]
 gi|122700835|emb|CAL88006.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|325130014|gb|EGC52808.1| GTP-binding protein [Neisseria meningitidis OX99.30304]
          Length = 485

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|292806430|gb|ADE42345.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|317452821|emb|CBL87846.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|290968707|ref|ZP_06560245.1| ribosome-associated GTPase EngA [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781360|gb|EFD93950.1| ribosome-associated GTPase EngA [Megasphaera genomosp. type_1 str.
           28L]
          Length = 443

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFNA+ KK +AIV DIPG TRD +  D +  G    + DT GI   D
Sbjct: 6   VAVVGRPNVGKSTLFNAIVKKRIAIVEDIPGVTRDRIYFDAEWLGREFTMIDTGGIEFVD 65

Query: 282 --DIVEKEGIKRTFLEVENADLILLL 305
             D +  +   +  L +  AD+IL +
Sbjct: 66  AADRIFTDMRYQAELAIREADVILFV 91



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L + +  HI      E   +   I ++G  N GKSS+ NAL  ++  IV+++PGTTRD +
Sbjct: 157 LLDSVLQHIQHLPTPEEREDTIHIALVGRPNVGKSSMTNALLGQERVIVSNVPGTTRDSI 216

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
                       + DTAG+R   + D  VE+  + R    V+ +D+ +L+
Sbjct: 217 DTYWTYNDTSFVLIDTAGMRRKAKVDIPVERYSVVRALRAVDRSDVAVLV 266


>gi|282860196|ref|ZP_06269270.1| ribosome-associated GTPase EngA [Prevotella bivia JCVIHMP010]
 gi|282587017|gb|EFB92248.1| ribosome-associated GTPase EngA [Prevotella bivia JCVIHMP010]
          Length = 437

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSSL NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSLINAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 237 NKVSEDLEFYSVMRSIRSIENSDVCILM 264



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L K   AIV+D+ GTTRD         G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTKTRHAIVSDVAGTTRDRQYGKCTWNGREFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI E    ++  +  E ADL+L +
Sbjct: 65  DDIFEDAIRQQVLVATEEADLVLFV 89


>gi|122702439|emb|CAL88410.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKTLNLKAAQMSDLIL 90


>gi|122701579|emb|CAL88179.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702275|emb|CAL88328.1| GTPase [Helicobacter pylori]
          Length = 168

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
             + KE         + +DLIL
Sbjct: 67  AFLSKEIKAFNLKAAQMSDLIL 88


>gi|122702137|emb|CAL88259.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700907|emb|CAL88042.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700711|emb|CAL87944.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|99905881|gb|ABF68635.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|108864612|gb|ABA94923.2| small GTP-binding protein domain containing protein, expressed
           [Oryza sativa Japonica Group]
          Length = 344

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +   E G   K+ DTAGIR  
Sbjct: 54  IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRR 113

Query: 281 DDI------VEKEGIKRTFLEVENADLILLLKE 307
             +       E   +KR F  +  +D++ L+ E
Sbjct: 114 AAVASAGSTTETLSVKRAFRAIRRSDVVALVVE 146


>gi|317452833|emb|CBL87852.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806588|gb|ADE42424.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806582|gb|ADE42421.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806528|gb|ADE42394.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|195954205|gb|ACG58808.1| YphC [Helicobacter pylori]
 gi|195954207|gb|ACG58809.1| YphC [Helicobacter pylori]
 gi|195954223|gb|ACG58817.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702617|emb|CAL88498.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702539|emb|CAL88459.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702387|emb|CAL88384.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702637|emb|CAL88508.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702251|emb|CAL88316.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701613|emb|CAL88196.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700593|emb|CAL87885.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|115605757|gb|ABJ15860.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806572|gb|ADE42416.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|242255936|gb|ACS88952.1| GTPase [Helicobacter pylori]
 gi|242255938|gb|ACS88953.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|225077176|ref|ZP_03720375.1| hypothetical protein NEIFLAOT_02231 [Neisseria flavescens
           NRL30031/H210]
 gi|224951524|gb|EEG32733.1| hypothetical protein NEIFLAOT_02231 [Neisseria flavescens
           NRL30031/H210]
          Length = 486

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 180 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 239

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 240 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 273



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 6   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 66  DSGILHEMAKQTLQAVDEADAVVFL 90


>gi|210622342|ref|ZP_03293111.1| hypothetical protein CLOHIR_01059 [Clostridium hiranonis DSM 13275]
 gi|210154330|gb|EEA85336.1| hypothetical protein CLOHIR_01059 [Clostridium hiranonis DSM 13275]
          Length = 441

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L ++I ++  +G   EI  +  K+ I G  NAGKSS+ N +  +D  IV+ I GTTRD +
Sbjct: 159 LLDEIVANFPEGLNTEIDEDTIKVAITGKPNAGKSSILNNILGEDRVIVSPIAGTTRDAV 218

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
               +  G    + DTAG+R    +   VEK  + R    V+ AD++L++
Sbjct: 219 DTYFEKNGQNYLLIDTAGLRRKSKVYESVEKYSVIRAMSAVDRADVVLIV 268



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 22/157 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS++FN  A + ++IV D PG TRD +  +++       + DT GI  ++
Sbjct: 9   VAVVGRPNVGKSTIFNKFAGRRISIVEDTPGVTRDRIFTEVEWLNKYFTLIDTGGIEPKS 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----------KNIDFIFIGTKSD 330
           DDI+  +   +  L ++ A +IL++  ++ K+ I+             N   I +  K D
Sbjct: 69  DDIIVSQMRNQAMLAMDMAHVILMV--VDGKQGITAADREIAETLRRTNKPVILVVNKID 126

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
             S Y   YD           IS     GL +L+++I
Sbjct: 127 SMSQYDNVYDFYELGLGEPFAISGANSMGLGDLLDEI 163


>gi|122702435|emb|CAL88408.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702423|emb|CAL88402.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702705|emb|CAL88542.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|122701545|emb|CAL88162.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702125|emb|CAL88253.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKAFNLKAAQMSDLILYV 92


>gi|122701419|emb|CAL88099.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKTAQMSDLIL 90


>gi|122700847|emb|CAL88012.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|242255906|gb|ACS88937.1| GTPase [Helicobacter pylori]
 gi|242255908|gb|ACS88938.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|237732490|ref|ZP_04562971.1| GTP-binding protein EngA [Citrobacter sp. 30_2]
 gi|226908029|gb|EEH93947.1| GTP-binding protein EngA [Citrobacter sp. 30_2]
          Length = 504

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 218 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKR 277

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 278 GKITEAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 313



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 19  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 78

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 79  DGVETRMAEQSLLAIEEADVVLFM 102


>gi|261345330|ref|ZP_05972974.1| ribosome-associated GTPase EngA [Providencia rustigianii DSM 4541]
 gi|282566664|gb|EFB72199.1| ribosome-associated GTPase EngA [Providencia rustigianii DSM 4541]
          Length = 491

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 206 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDEREYILIDTAGVRKR 265

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 266 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 301



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE     ++   +E AD++L +
Sbjct: 65  EGVETHMAAQSLQAIEEADVVLFM 88


>gi|207108954|ref|ZP_03243116.1| GTP-binding protein EngA [Helicobacter pylori HPKX_438_CA4C1]
          Length = 121

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91


>gi|122702427|emb|CAL88404.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702329|emb|CAL88355.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701607|emb|CAL88193.1| GTPase [Helicobacter pylori]
 gi|122702199|emb|CAL88290.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701533|emb|CAL88156.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|4467669|emb|CAB37786.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKAFNLKAAQMSDLILYV 92


>gi|23015371|ref|ZP_00055149.1| COG1160: Predicted GTPases [Magnetospirillum magnetotacticum MS-1]
          Length = 464

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           + + I+G  N GKS+LFN L  K +AIV D+PG TRD       L G   ++ DTAG   
Sbjct: 3   FTVAIIGRPNVGKSTLFNRLVGKRLAIVHDLPGVTRDRREGRASLLGMEFQVVDTAGFED 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           +T D +E     +T + V  AD+ LLL
Sbjct: 63  DTGDSIEARMRHQTDMAVSEADVALLL 89



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 82/180 (45%), Gaps = 29/180 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  +D  +     G TRD + ++ +  G  +K+ DTAG+R+  
Sbjct: 197 MAIVGRPNVGKSTLGNQLLGQDRLLTGPEAGLTRDAIAVEWEHRGRRMKLVDTAGLRKKA 256

Query: 282 ---DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPKNI-----DFIFIGTKSD 330
              D +EK  +  T   +  +++++L+ +   I  K++++  + +       +    K D
Sbjct: 257 QIYDAIEKLSVGNTIETIRMSEVVVLVMDAAAILDKQDLTIARMVVEEGRALVLAINKWD 316

Query: 331 LYSTYTEEYDHL------------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +          L                  +S+ TG+G+E L++ +    +N  +++P +
Sbjct: 317 VVDDPQTALKRLKDRLETSLPQAKGVTTVTLSALTGKGIERLMDGVLDTWTNWNRRIPTA 376


>gi|317453521|emb|CBL87870.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|242255944|gb|ACS88956.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702523|emb|CAL88451.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702497|emb|CAL88439.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700661|emb|CAL87919.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806560|gb|ADE42410.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|268608007|ref|ZP_06141738.1| small GTP-binding protein [Ruminococcus flavefaciens FD-1]
          Length = 442

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 5/89 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K+ ++G  NAGKSSL N +A ++  IV+DI GTTRD   T+  + +G  V I DTAGIR+
Sbjct: 179 KVAVIGKPNAGKSSLINKIAGEERVIVSDIAGTTRDSTDTVIENEQGKFVFI-DTAGIRK 237

Query: 280 TDDIVEK---EGIKRTFLEVENADLILLL 305
              + EK     + R ++ V+ AD+ +++
Sbjct: 238 KSKVTEKIEHYSVLRAYMAVDRADVCVIM 266



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + ++IV D PG TRD +    +  G    + DT GI  ++
Sbjct: 6   VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYSKCEWRGKEFMVVDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           DD++  +  +++ L +E AD+I+ + +I
Sbjct: 66  DDVILSQMRRQSELAIEKADVIVFVTDI 93


>gi|167031915|ref|YP_001667146.1| GTP-binding protein EngA [Pseudomonas putida GB-1]
 gi|189037155|sp|B0KPJ1|DER_PSEPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166858403|gb|ABY96810.1| small GTP-binding protein [Pseudomonas putida GB-1]
          Length = 487

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  +V D PGTTRD + I  + +G      DTAG
Sbjct: 190 KDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDEPGTTRDSIYIPFERDGEKYTFIDTAG 249

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R+   I   VEK  + +T   +++A++++ +
Sbjct: 250 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 281



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L K   AIV D+ G TRD    D   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDATWQGRSFILIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ + +E AD +L L
Sbjct: 65  VGMDEKMAEQSLMAIEEADYVLFL 88


>gi|122702425|emb|CAL88403.1| GTPase [Helicobacter pylori]
 gi|122702533|emb|CAL88456.1| GTPase [Helicobacter pylori]
 gi|122702693|emb|CAL88536.1| GTPase [Helicobacter pylori]
 gi|292806584|gb|ADE42422.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|93004286|gb|ABE97063.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|296314652|ref|ZP_06864593.1| ribosome-associated GTPase EngA [Neisseria polysaccharea ATCC
           43768]
 gi|296838560|gb|EFH22498.1| ribosome-associated GTPase EngA [Neisseria polysaccharea ATCC
           43768]
          Length = 485

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|156603663|ref|XP_001618879.1| hypothetical protein NEMVEDRAFT_v1g153067 [Nematostella vectensis]
 gi|156200746|gb|EDO26779.1| predicted protein [Nematostella vectensis]
          Length = 304

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 46  RFAVVGRPNAGKSSFINALIGEDRNIVTNIAGTTRDSIDTKYNRFGFDFNLVDTAGIRKK 105

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    +E +D+I+L+
Sbjct: 106 SKVKEDLEFYSVMRAVRTIEYSDVIILM 133


>gi|122702737|emb|CAL88558.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702259|emb|CAL88320.1| GTPase [Helicobacter pylori]
 gi|122702335|emb|CAL88358.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKAFNLKAAQMSDLILYV 92


>gi|332305588|ref|YP_004433439.1| ribosome-associated GTPase EngA [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172917|gb|AEE22171.1| ribosome-associated GTPase EngA [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 482

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 61/101 (60%), Gaps = 3/101 (2%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           ++ +L +++ +  K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ +G 
Sbjct: 183 AEKQLEKLLASPIKLAIVGKPNVGKSTLTNRILGEERVVVYDQPGTTRDSIFIPMERDGR 242

Query: 268 LVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
              + DTAG+R    I   VEK  I +T   +E A+++LL+
Sbjct: 243 EYVLIDTAGVRRRRSISEAVEKFSIVKTLQAIEEANVVLLV 283



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      + EG    + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYEGLQFIVVDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     ++ + ++ AD++L L
Sbjct: 65  QGIDMAMANQSLMAIDEADVVLFL 88


>gi|317453517|emb|CBL87868.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806626|gb|ADE42443.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806518|gb|ADE42389.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 4/96 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEI 314
            ++ KE         + +DLIL +   K I S ++I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDI 104


>gi|291533878|emb|CBL06991.1| ribosome-associated GTPase EngA [Megamonas hypermegale ART12/1]
          Length = 401

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL NAL  ++  IV+D+ GTTRD +    D       + DTAG+R  
Sbjct: 137 RIAVIGRPNVGKSSLVNALLGQERVIVSDVAGTTRDAIDTKFDDGNTHFTLIDTAGMRRK 196

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  + R+   V+ AD++L++
Sbjct: 197 GKIDMPIERYSVMRSLRAVDRADVVLMV 224


>gi|289449698|ref|YP_003474787.1| ribosome-associated GTPase EngA [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184245|gb|ADC90670.1| ribosome-associated GTPase EngA [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 441

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+ FN LA + ++IV D PG TRD +  +++  G    + DT GI   T
Sbjct: 6   VAVVGRPNVGKSTFFNFLAGERISIVDDTPGVTRDRIYAEVEWLGRKFSLIDTGGIEPRT 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD++ ++   +  L +E AD+IL + ++ +
Sbjct: 66  DDVLLQQMRIQAELAIETADVILFMVDLKA 95



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  NAGKSSL N L  ++ +IV+ I GTTRD L   L  E     + DTAG+R+ 
Sbjct: 179 KICLIGKPNAGKSSLTNRLLGQNRSIVSSISGTTRDSLDTPLTNEFGNYVLIDTAGLRKK 238

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305
              DD VE+  + R    +E +D+ L+L
Sbjct: 239 SRIDDQVERYSMIRALAAIERSDVCLIL 266


>gi|242255904|gb|ACS88936.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|255693537|ref|ZP_05417212.1| ribosome-associated GTPase EngA [Bacteroides finegoldii DSM 17565]
 gi|260620675|gb|EEX43546.1| ribosome-associated GTPase EngA [Bacteroides finegoldii DSM 17565]
          Length = 437

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEAAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +DDI E+E  K+  L VE AD+IL + ++
Sbjct: 62  VNSDDIFEEEIRKQVLLAVEEADVILFVVDV 92



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E +D+ +L+
Sbjct: 237 SKVNEDLEYYSVIRSIRAIEGSDVCILM 264


>gi|122702763|emb|CAL88571.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702573|emb|CAL88476.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702315|emb|CAL88348.1| GTPase [Helicobacter pylori]
 gi|122702337|emb|CAL88359.1| GTPase [Helicobacter pylori]
          Length = 168

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             + KE         + +DLIL +
Sbjct: 67  AFLSKEIKAFNLKAAQMSDLILYV 90


>gi|122702291|emb|CAL88336.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|317452815|emb|CBL87843.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+   D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAR-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|313668681|ref|YP_004048965.1| GTP-binding protein [Neisseria lactamica ST-640]
 gi|313006143|emb|CBN87604.1| putative GTP-binding protein [Neisseria lactamica 020-06]
          Length = 485

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|242255900|gb|ACS88934.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702407|emb|CAL88394.1| GTPase [Helicobacter pylori]
          Length = 168

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             + KE         + +DLIL +
Sbjct: 67  AFLSKEIKAFNLKAAQMSDLILYV 90


>gi|122701341|emb|CAL88060.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700791|emb|CAL87984.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 4/96 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEI 314
            ++ KE         + +DLIL +   K I S ++I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDI 104


>gi|104780244|ref|YP_606742.1| GTP-binding protein EngA [Pseudomonas entomophila L48]
 gi|166225841|sp|Q1IEH7|DER_PSEE4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|95109231|emb|CAK13928.1| GTP-binding protein EngA [Pseudomonas entomophila L48]
          Length = 488

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  +V D PGTTRD + I  + +G      DTAG
Sbjct: 190 KDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDQPGTTRDSIYIPFERDGEKYTFIDTAG 249

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R+   I   VEK  + +T   +++A++++ +
Sbjct: 250 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 281



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L K   AIV D+ G TRD    D   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSYILIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ + +E AD +L L
Sbjct: 65  VGMDEKMAEQSLMAIEEADYVLFL 88


>gi|18075555|emb|CAD11173.1| GTP-binding protein [Helicobacter pylori]
 gi|122702821|emb|CAL88600.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKTLNLKAAQMSDLIL 90


>gi|26987593|ref|NP_743018.1| GTP-binding protein EngA [Pseudomonas putida KT2440]
 gi|37999649|sp|Q88PJ3|DER_PSEPK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|24982270|gb|AAN66482.1|AE016277_1 GTP-binding protein EngA [Pseudomonas putida KT2440]
          Length = 487

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  +V D PGTTRD + I  + +G      DTAG
Sbjct: 190 KDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDEPGTTRDSIYIPFERDGEKYTFIDTAG 249

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R+   I   VEK  + +T   +++A++++ +
Sbjct: 250 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 281



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L K   AIV D+ G TRD    D   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ + +E AD +L L
Sbjct: 65  VGMDEKMAEQSLMAIEEADYVLFL 88


>gi|317484901|ref|ZP_07943790.1| ribosome-associated GTPase EngA [Bilophila wadsworthia 3_1_6]
 gi|316923839|gb|EFV45036.1| ribosome-associated GTPase EngA [Bilophila wadsworthia 3_1_6]
          Length = 452

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  ++ +LG  NAGKSSL NA+  +D  IV+D+ GTTRD + I    +G   +  DTAG+
Sbjct: 187 NVLRLAMLGRPNAGKSSLVNAMIGEDRMIVSDVAGTTRDSVDIPFVSDGRACEFVDTAGV 246

Query: 278 RET---DDIVEKEGIKRTFLEVENADLILLL 305
           R      D VE+  +  +      AD+ L +
Sbjct: 247 RRRTRITDTVERFSVNSSLKTTTKADVTLYV 277



 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGI 277
           KI +LG  N GKS+LFN L + + AI  D PG TRD +  +     G    + DT G+
Sbjct: 4   KIALLGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGVVRSRSGRSFTLIDTGGV 61


>gi|122702133|emb|CAL88257.1| GTPase [Helicobacter pylori]
 gi|122702141|emb|CAL88261.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|47459318|ref|YP_016180.1| GTP-binding protein EngA [Mycoplasma mobile 163K]
 gi|47458648|gb|AAT27969.1| predicted GTPase protein [Mycoplasma mobile 163K]
          Length = 432

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 15/149 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  K  A+V DIPG TRD L      +G   ++ DT GI+  D
Sbjct: 5   IAIVGKPNVGKSTIFNRIIGKRQAVVADIPGVTRDRLYEKATWDGKTFEVVDTGGIQIED 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD--- 330
              +K+   +  + +E AD+I+ + E  S+         +I    N    F+  K +   
Sbjct: 65  VPFQKQIKIQAMIAIEEADVIIFVVEGRSELSKDDYLIVDILRKSNKQIFFVANKLEDNH 124

Query: 331 --LYSTYTEEYDHL--ISSFTGEGLEELI 355
              +S Y   +D +  IS+  GEG+ +L+
Sbjct: 125 EFDHSLYKLGFDKIFKISALHGEGIGDLL 153



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 5/90 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
           +KI I+G  NAGKSSL N +  ++ +IV+ IPGTT D ++     +   +KI DTAGI  
Sbjct: 171 FKIAIIGKPNAGKSSLLNTILDEERSIVSPIPGTTHDPISESFYYKDEKLKIIDTAGIIK 230

Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLL 305
             R  DDI +   + R F  +E ++L+LL+
Sbjct: 231 KSRMADDI-DFYILNRAFKTIEESNLVLLI 259


>gi|47097577|ref|ZP_00235108.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854]
 gi|47014052|gb|EAL05054.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854]
          Length = 400

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 5/115 (4%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + +H  + +  E   +  K  ++G  N GKSS+ NAL  +D  IV+DI GTTRD +    
Sbjct: 123 VRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTY 182

Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             +G    + DTAG+R+   +    EK  + R    +E +D++L++  IN+++ I
Sbjct: 183 TFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVV--INAEEGI 235


>gi|298368463|ref|ZP_06979781.1| ribosome-associated GTPase EngA [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282466|gb|EFI23953.1| ribosome-associated GTPase EngA [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 492

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 186 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 245

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 246 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 279



 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 12  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGFEPVV 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 72  DSGILHEMAKQTLQAVDEADAVVFL 96


>gi|296532289|ref|ZP_06895028.1| ribosome-associated GTPase EngA [Roseomonas cervicalis ATCC 49957]
 gi|296267365|gb|EFH13251.1| ribosome-associated GTPase EngA [Roseomonas cervicalis ATCC 49957]
          Length = 445

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKS+LFN LA + +AIV D PG TRD    +  L G  V + DTAG+ E 
Sbjct: 4   RIAIIGRPNVGKSTLFNRLAGRKLAIVDDTPGVTRDRKETEARLGGRAVLLLDTAGLEEA 63

Query: 281 -DDIVEKEGIKRTFLEVENADLILLL 305
             D V       +   + +ADL+L +
Sbjct: 64  PPDTVAGRMRASSEAAIRDADLVLFV 89



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 32/181 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           ++ I+G  NAGKS+L NAL  ++  I    PG TRD + ++  D  G  V++ DTAG+R+
Sbjct: 179 RLAIVGRPNAGKSTLLNALLGEERMITGPEPGLTRDAVAVEWTDETGGKVRLVDTAGMRK 238

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN-------------SKKE-----ISFPK 318
              I+   E+  +  T   ++ A+  +L+ + N             +++E     I+F K
Sbjct: 239 KARIIEGLEQMSVAATIAALKEAEAAILVLDANLGMDEQDLRIARLAEREGRAVIIAFNK 298

Query: 319 NIDFI--FIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKL 369
             D +      +  L    T     L       +S+ TG G+E L+  ++  +    +++
Sbjct: 299 -WDAVEDRAACRRKLDDVLTASLAQLKGVEVVTLSAMTGRGVERLMPAVRQTVERWNRRI 357

Query: 370 P 370
           P
Sbjct: 358 P 358


>gi|122702683|emb|CAL88531.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702743|emb|CAL88561.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702453|emb|CAL88417.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702287|emb|CAL88334.1| GTPase [Helicobacter pylori]
 gi|122702327|emb|CAL88354.1| GTPase [Helicobacter pylori]
          Length = 168

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEI 314
             + KE         + +DLIL +   K I S ++I
Sbjct: 67  AFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDI 102


>gi|122702297|emb|CAL88339.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700831|emb|CAL88004.1| GTPase [Helicobacter pylori]
 gi|122700869|emb|CAL88023.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|4467663|emb|CAB37783.1| GTP-binding protein homologue [Helicobacter pylori]
 gi|4467673|emb|CAB37788.1| GTP-binding protein homologue [Helicobacter pylori]
 gi|122700741|emb|CAL87959.1| GTPase [Helicobacter pylori]
 gi|292806526|gb|ADE42393.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806604|gb|ADE42432.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|319899216|ref|YP_004159309.1| GTP-binding protein [Bartonella clarridgeiae 73]
 gi|319403180|emb|CBI76739.1| GTP-binding protein [Bartonella clarridgeiae 73]
          Length = 478

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 24/158 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  + +A+V + PG TRD       L+     + DTAG+ E D
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGQKLALVDNQPGVTRDRRIHSAKLQDLHFDVIDTAGLEEAD 64

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKS 329
           +  +E     +T + ++ ADLIL +  +++K  I+   ++DF           + +  KS
Sbjct: 65  NHTLEGRMRSQTKIAIDEADLILFV--LDAKSGIT-SSDLDFASLIRKSGKPIVLVSNKS 121

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
           +  +    EYD           IS+  G+GL +L + I
Sbjct: 122 ESKAAIAGEYDAWSLRLGKPCSISAEHGQGLSDLRDAI 159



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKS+L N++  ++  +     G TRD +++D +     +K+ DTAG+R  
Sbjct: 209 RIAIVGRPNTGKSTLINSMLGQNRLLTGPEAGITRDSISVDWEWNNRRIKLFDTAGLRRK 268

Query: 281 DDIVEK 286
             + EK
Sbjct: 269 SKVQEK 274


>gi|122700715|emb|CAL87946.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|270264725|ref|ZP_06192990.1| GTP-binding protein EngA [Serratia odorifera 4Rx13]
 gi|270041408|gb|EFA14507.1| GTP-binding protein EngA [Serratia odorifera 4Rx13]
          Length = 493

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE     ++ L +E AD++L +
Sbjct: 65  DGVETRMAGQSLLAIEEADIVLFM 88



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 207 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 266

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A+++LL+  +++++ IS
Sbjct: 267 GKVTETVEKFSVIKTLQAIEDANVVLLV--VDAREGIS 302


>gi|242255916|gb|ACS88942.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|261379855|ref|ZP_05984428.1| ribosome-associated GTPase EngA [Neisseria subflava NJ9703]
 gi|284797551|gb|EFC52898.1| ribosome-associated GTPase EngA [Neisseria subflava NJ9703]
          Length = 485

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|18075559|emb|CAD11175.1| GTP-binding protein [Helicobacter pylori]
 gi|122702347|emb|CAL88364.1| GTPase [Helicobacter pylori]
 gi|122702819|emb|CAL88599.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|99905863|gb|ABF68626.1| YphC [Helicobacter pylori]
 gi|122702231|emb|CAL88306.1| GTPase [Helicobacter pylori]
 gi|242255926|gb|ACS88947.1| GTPase [Helicobacter pylori]
 gi|292806516|gb|ADE42388.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|325127951|gb|EGC50852.1| GTP-binding protein [Neisseria meningitidis N1568]
 gi|325134015|gb|EGC56670.1| GTP-binding protein [Neisseria meningitidis M13399]
 gi|325202361|gb|ADY97815.1| GTP-binding protein [Neisseria meningitidis M01-240149]
 gi|325206317|gb|ADZ01770.1| GTP-binding protein [Neisseria meningitidis M04-240196]
 gi|325207887|gb|ADZ03339.1| GTP-binding protein [Neisseria meningitidis NZ-05/33]
          Length = 485

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|292806482|gb|ADE42371.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|257460130|ref|ZP_05625234.1| ribosome-associated GTPase EngA [Campylobacter gracilis RM3268]
 gi|257442571|gb|EEV17710.1| ribosome-associated GTPase EngA [Campylobacter gracilis RM3268]
          Length = 461

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++I+G  N GKSSLFN LA   +AI +D+ GTTRD    + ++    V++ D+ G+ +T 
Sbjct: 4   LIIIGRPNVGKSSLFNRLAGARIAITSDVAGTTRDTNRAEAEIFDRRVRVIDSGGLDDTS 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
           ++  +   K T  E ++ADLI+ + +
Sbjct: 64  ELFARVQAK-TLSEAKSADLIIFMTD 88



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL NAL     ++V+D  GTT D +    +  G  ++  DTAGIR    I
Sbjct: 203 IIGRVNVGKSSLLNALVGSQRSVVSDYAGTTIDPVNESTEFGGRTLEFIDTAGIRRRGKI 262

Query: 284 --VEKEGIKRTFLEVENADLILLL 305
             +E+  + RT   ++N+D+ LL+
Sbjct: 263 EGIERFALNRTEKILQNSDITLLV 286


>gi|254804723|ref|YP_003082944.1| putative GTP-binding protein [Neisseria meningitidis alpha14]
 gi|254668265|emb|CBA05137.1| putative GTP-binding protein [Neisseria meningitidis alpha14]
 gi|254673335|emb|CBA08527.1| putative GTP-binding protein [Neisseria meningitidis alpha275]
 gi|325132265|gb|EGC54958.1| GTP-binding protein [Neisseria meningitidis M6190]
 gi|325137764|gb|EGC60339.1| GTP-binding protein [Neisseria meningitidis ES14902]
          Length = 485

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|269214116|ref|ZP_05983629.2| ribosome-associated GTPase EngA [Neisseria cinerea ATCC 14685]
 gi|269144512|gb|EEZ70930.1| ribosome-associated GTPase EngA [Neisseria cinerea ATCC 14685]
          Length = 537

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 3/86 (3%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 231 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 290

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            D+ VEK  + +    VE A++ +L+
Sbjct: 291 VDEAVEKFSVIKAMQAVEAANVAVLV 316



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 57  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 116

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 117 DSGILHEMAKQTLQAVDEADAVVFL 141


>gi|122702293|emb|CAL88337.1| GTPase [Helicobacter pylori]
 gi|122702303|emb|CAL88342.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701625|emb|CAL88202.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702205|emb|CAL88293.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKAINLKAAQMSDLIL 90


>gi|122700787|emb|CAL87982.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|121634628|ref|YP_974873.1| GTP-binding protein EngA [Neisseria meningitidis FAM18]
 gi|166225830|sp|A1KT93|DER_NEIMF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|120866334|emb|CAM10076.1| putative GTP-binding protein [Neisseria meningitidis FAM18]
 gi|261392799|emb|CAX50375.1| putative GTP-binding protein EngA [Neisseria meningitidis 8013]
 gi|325142105|gb|EGC64531.1| GTP-binding protein [Neisseria meningitidis 961-5945]
 gi|325198052|gb|ADY93508.1| GTP-binding protein [Neisseria meningitidis G2136]
 gi|325203920|gb|ADY99373.1| GTP-binding protein [Neisseria meningitidis M01-240355]
          Length = 485

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|15676748|ref|NP_273893.1| GTP-binding protein EngA [Neisseria meningitidis MC58]
 gi|26006741|sp|Q9JZY1|DER_NEIMB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|7226088|gb|AAF41263.1| essential GTPase [Neisseria meningitidis MC58]
 gi|316984259|gb|EFV63235.1| small GTP-binding domain protein [Neisseria meningitidis H44/76]
 gi|325140003|gb|EGC62532.1| GTP-binding protein [Neisseria meningitidis CU385]
 gi|325200471|gb|ADY95926.1| GTP-binding protein [Neisseria meningitidis H44/76]
          Length = 485

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVITFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|326797802|ref|YP_004315621.1| GTP-binding protein engA [Sphingobacterium sp. 21]
 gi|326548566|gb|ADZ76951.1| GTP-binding protein engA [Sphingobacterium sp. 21]
          Length = 433

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  I+G  N GKSS  NAL  K+  IVT I GTTRD + I  +  G+   + DTAG+R  
Sbjct: 175 KYAIVGRPNVGKSSFINALIGKERNIVTPIAGTTRDSIQIHYNQFGHEFMLIDTAGLRRK 234

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + RT   +E AD+++L+
Sbjct: 235 TKVKENIEFYSVMRTIKALEEADVVILM 262



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           I I+G  N GKS+L+N L +   AIV D+ G TRD      +  G    + DT G +  +
Sbjct: 5   IAIVGRPNVGKSTLYNRLTESRKAIVDDMSGVTRDRHYGQAEWVGKTFTVIDTGGYVHGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           +DI E    ++  + +E A +IL + ++
Sbjct: 65  EDIFEAAIREQVLIAIEEASVILFMVDV 92


>gi|317011055|gb|ADU84802.1| GTP-binding protein EngA [Helicobacter pylori SouthAfrica7]
          Length = 460

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 9   IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 67

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
             + KE         + +DLIL
Sbjct: 68  AFLSKEIKAFNLKAAQMSDLIL 89



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 25/178 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ +IV+ + GTT D +   + +    +   DTAGIR  
Sbjct: 200 QVGIIGRVNVGKSSLLNALTKKERSIVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 259

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             I  +EK  ++RT   +E + + LL+ ++++           ++   ++  I I  K D
Sbjct: 260 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 319

Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           + Y+ Y E            EY  +I  S      +EE+ +KI  +     K++P S+
Sbjct: 320 IRYAPYEEIMAVLKRKFRFLEYAPVITTSCLKTRHIEEIKHKIIEVYECFSKRIPTSL 377


>gi|122700811|emb|CAL87994.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700705|emb|CAL87941.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|157371840|ref|YP_001479829.1| GTP-binding protein EngA [Serratia proteamaculans 568]
 gi|166920103|sp|A8GHW1|DER_SERP5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157323604|gb|ABV42701.1| small GTP-binding protein [Serratia proteamaculans 568]
          Length = 494

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE     ++ L +E AD++L +
Sbjct: 65  DGVETRMAGQSLLAIEEADIVLFM 88



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 268

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A+++LL+  +++++ IS
Sbjct: 269 GKVTETVEKFSVIKTLQAIEDANVVLLV--VDAREGIS 304


>gi|313497226|gb|ADR58592.1| EngA [Pseudomonas putida BIRD-1]
          Length = 487

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  +V D PGTTRD + I  + +G      DTAG
Sbjct: 190 KDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDEPGTTRDSIYIPFERDGEKYTFIDTAG 249

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R+   I   VEK  + +T   +++A++++ +
Sbjct: 250 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 281



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L K   AIV D+ G TRD    D   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ + +E AD +L L
Sbjct: 65  VGMDEKMAEQSLMAIEEADYVLFL 88


>gi|292806454|gb|ADE42357.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|225010004|ref|ZP_03700476.1| small GTP-binding protein [Flavobacteria bacterium MS024-3C]
 gi|225005483|gb|EEG43433.1| small GTP-binding protein [Flavobacteria bacterium MS024-3C]
          Length = 436

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGIRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E++D+ +L+
Sbjct: 237 AKVREDLEFYSVMRSVRAIEHSDVCILI 264



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGREFSVIDTGGYVLGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD+ EKE  K+  L ++ AD I+ + ++ +
Sbjct: 65  DDVFEKEIDKQVELAIDEADAIIFMVDVET 94


>gi|122701509|emb|CAL88144.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHKVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702377|emb|CAL88379.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKAFNLKAAQMSDLILYV 92


>gi|122702309|emb|CAL88345.1| GTPase [Helicobacter pylori]
 gi|122702409|emb|CAL88395.1| GTPase [Helicobacter pylori]
          Length = 168

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
             + KE         + +DLIL
Sbjct: 67  AFLSKEIKSFNLKAAQMSDLIL 88


>gi|309379417|emb|CBX21984.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 485

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|292806492|gb|ADE42376.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|288958550|ref|YP_003448891.1| GTP-binding protein [Azospirillum sp. B510]
 gi|288910858|dbj|BAI72347.1| GTP-binding protein [Azospirillum sp. B510]
          Length = 464

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + +V++G  N GKS+LFN LA K +A+V D PG TRD  +    + G    + DTAG+ +
Sbjct: 3   FTVVLVGRPNVGKSTLFNRLAGKKLALVDDTPGVTRDWRSAPAHVGGLSFTVVDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TDD +E    ++T   +  AD+ L +
Sbjct: 63  VTDDSLEARMRRQTEQALARADVALFI 89



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I I+G  N GKS+L N+L  ++  +     G TRD +T+D +      K+ DTAG+R  
Sbjct: 199 QIAIVGRPNVGKSTLLNSLLGEERVLTGPEAGMTRDAITVDWEWRDRRFKLVDTAGMRRR 258

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
              D+ VEK  +  +   +  A++++L+
Sbjct: 259 ARVDEKVEKLAVADSLRVIRMANVVVLV 286


>gi|212710611|ref|ZP_03318739.1| hypothetical protein PROVALCAL_01677 [Providencia alcalifaciens DSM
           30120]
 gi|212686692|gb|EEB46220.1| hypothetical protein PROVALCAL_01677 [Providencia alcalifaciens DSM
           30120]
          Length = 492

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 207 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDEREYILIDTAGVRKR 266

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 267 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 302



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE     ++   +E AD++L +
Sbjct: 65  EGVETHMAAQSLQAIEEADVVLFM 88


>gi|122702301|emb|CAL88341.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700595|emb|CAL87886.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKAINLKAAQMSDLIL 90


>gi|323703070|ref|ZP_08114725.1| ribosome-associated GTPase EngA [Desulfotomaculum nigrificans DSM
           574]
 gi|323531964|gb|EGB21848.1| ribosome-associated GTPase EngA [Desulfotomaculum nigrificans DSM
           574]
          Length = 442

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL NA+  ++  IV++IPGTTRD +    +  G    I DTAG+R  
Sbjct: 178 RIAVIGRPNVGKSSLVNAILGEERVIVSNIPGTTRDAIDSPFERNGKSYVIVDTAGMRRR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + I    E+  + R    ++  D+ L+L
Sbjct: 238 NRIDLPAERYSVVRALRAIDRCDVALML 265



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS LFN +    +AIV D+PG TRD L  D + +G    + DT G+   +
Sbjct: 6   VAIVGRPNVGKSMLFNRIVGSRIAIVEDMPGVTRDRLYQDAEWQGREFTLVDTGGLDFAE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D++  +  K+  L +  AD ++ +
Sbjct: 66  DVITSQIRKQAELAMREADAVIFV 89


>gi|292806664|gb|ADE42462.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKAINLKAAQMSDLIL 90


>gi|122702323|emb|CAL88352.1| GTPase [Helicobacter pylori]
 gi|122702361|emb|CAL88371.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|109947730|ref|YP_664958.1| GTP-binding protein EngA [Helicobacter acinonychis str. Sheeba]
 gi|123362586|sp|Q17WL7|DER_HELAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|109714951|emb|CAJ99959.1| GTP-binding protein [Helicobacter acinonychis str. Sheeba]
          Length = 462

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLAKERIAITSDFVGTTRDINKRKITLNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
             + KE         + +DLIL +   K I S ++I   + I
Sbjct: 70  AFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 111



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 29/185 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EII+ G    I+G  N GKSSL N L +K+ +IV+ + GTT D +   + ++   +   D
Sbjct: 199 EIIQVG----IIGRVNVGKSSLLNVLTQKERSIVSSVAGTTIDPIDETILVKNQKICFVD 254

Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFI 323
           TAGIR    I  +EK  ++RT   +E + + LL+ ++++           ++   ++  I
Sbjct: 255 TAGIRHKGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGII 314

Query: 324 FIGTKSDL-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKK 368
            I  K D+ Y+ Y E            EY  +I  S      +EE+ +KI  +     K+
Sbjct: 315 LILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSCLKTRHIEEIKHKIIEVYECFSKR 374

Query: 369 LPFSI 373
           +P S+
Sbjct: 375 IPTSL 379


>gi|317453529|emb|CBL87874.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGRPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|242255962|gb|ACS88965.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKAINLKAAQMSDLIL 90


>gi|225849583|ref|YP_002729817.1| GTP-binding protein EngA [Persephonella marina EX-H1]
 gi|254783162|sp|C0QT02|DER_PERMH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|225645742|gb|ACO03928.1| ribosome-associated GTPase EngA [Persephonella marina EX-H1]
          Length = 447

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 3/86 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  NAGKSSL NA+  ++ A+V++IPGTTRDV+    + +       DTAG+R+ 
Sbjct: 184 KVAIVGKPNAGKSSLLNAILGEERAVVSEIPGTTRDVVDTLFEWKDQKFLFLDTAGLRKK 243

Query: 281 DDI---VEKEGIKRTFLEVENADLIL 303
             +   +E   I RT   ++ AD+I+
Sbjct: 244 SKVDYGIEFFSIGRTLDAIKKADVIV 269



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 37/62 (59%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y++ I+G  N GKSSLFN +  K  AIV DIPG TRD +    +  G   ++ DT G  E
Sbjct: 2   YRVAIVGRPNVGKSSLFNRIIGKRKAIVEDIPGVTRDRIVSTAEWRGVTFEVVDTGGYIE 61

Query: 280 TD 281
           +D
Sbjct: 62  SD 63


>gi|122702461|emb|CAL88421.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702255|emb|CAL88318.1| GTPase [Helicobacter pylori]
          Length = 168

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
             + KE         + +DLIL
Sbjct: 67  AFLSKEIKAFNLKAAQMSDLIL 88


>gi|331701406|ref|YP_004398365.1| GTP-binding protein engA [Lactobacillus buchneri NRRL B-30929]
 gi|329128749|gb|AEB73302.1| GTP-binding protein engA [Lactobacillus buchneri NRRL B-30929]
          Length = 435

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL NA+  +D  IV+DI GTTRD +    + +G    + DTAGIR+   +
Sbjct: 179 IIGRPNVGKSSLVNAILGEDRVIVSDIAGTTRDAIDTRFEADGIKFTMVDTAGIRKRGKV 238

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E+  + R    ++ +D+IL +
Sbjct: 239 YENTERYSVMRAMKAIDQSDVILFV 263



 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G  N GKS++FN +A   ++IV D PG TRD +    +       + DT GI+ +D
Sbjct: 6   VAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYSHGEWLATKFAMIDTGGIQISD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
                +   +  + ++ AD+I+ +
Sbjct: 66  APFATQIKSQAEIAIDEADVIVFI 89


>gi|325265768|ref|ZP_08132455.1| ribosome-associated GTPase EngA [Kingella denitrificans ATCC 33394]
 gi|324982751|gb|EGC18376.1| ribosome-associated GTPase EngA [Kingella denitrificans ATCC 33394]
          Length = 489

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVVDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  ++T   ++ AD ++ L
Sbjct: 65  DSGILHEMARQTLQAIDEADAVIFL 89


>gi|167768008|ref|ZP_02440061.1| hypothetical protein CLOSS21_02551 [Clostridium sp. SS2/1]
 gi|317498398|ref|ZP_07956693.1| ribosome-associated GTPase EngA [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167710337|gb|EDS20916.1| hypothetical protein CLOSS21_02551 [Clostridium sp. SS2/1]
 gi|291561010|emb|CBL39810.1| ribosome-associated GTPase EngA [butyrate-producing bacterium
           SSC/2]
 gi|316894292|gb|EFV16479.1| ribosome-associated GTPase EngA [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 440

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFNALA + ++IV D PG TRD +  D+    Y   + DT GI  ++
Sbjct: 6   IAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVTWLNYQFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            D++      +  + +E AD+I+ L ++
Sbjct: 66  GDLLLSHMRGQAEIAMETADVIIFLTDV 93



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKSSL N L  +D  IV+DI GTTRD +   +   G      DTAG+R+ 
Sbjct: 179 RVAIIGKPNAGKSSLINKLLGEDRLIVSDIAGTTRDAIDTTVKRNGKEYVFIDTAGLRKK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E+  + RT   VE  D+ +L+
Sbjct: 239 ARVKEDIERYSVIRTVAAVERCDVAILV 266


>gi|18075601|emb|CAD11196.1| GTP-binding protein [Helicobacter pylori]
 gi|122700745|emb|CAL87961.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|18310737|ref|NP_562671.1| GTP-binding protein EngA [Clostridium perfringens str. 13]
 gi|110798819|ref|YP_696441.1| GTP-binding protein EngA [Clostridium perfringens ATCC 13124]
 gi|110803315|ref|YP_699041.1| GTP-binding protein EngA [Clostridium perfringens SM101]
 gi|168207282|ref|ZP_02633287.1| putative GTP-binding protein Era [Clostridium perfringens E str.
           JGS1987]
 gi|168210612|ref|ZP_02636237.1| putative GTP-binding protein Era [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214232|ref|ZP_02639857.1| putative GTP-binding protein Era [Clostridium perfringens CPE str.
           F4969]
 gi|168217042|ref|ZP_02642667.1| putative GTP-binding protein Era [Clostridium perfringens NCTC
           8239]
 gi|169342731|ref|ZP_02863772.1| putative GTP-binding protein Era [Clostridium perfringens C str.
           JGS1495]
 gi|182625851|ref|ZP_02953617.1| putative GTP-binding protein Era [Clostridium perfringens D str.
           JGS1721]
 gi|26006720|sp|Q8XJK1|DER_CLOPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123148666|sp|Q0TPJ9|DER_CLOP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123341699|sp|Q0SS66|DER_CLOPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|18145418|dbj|BAB81461.1| probable GTP binding protein [Clostridium perfringens str. 13]
 gi|110673466|gb|ABG82453.1| ribosome-associated GTPase EngA [Clostridium perfringens ATCC
           13124]
 gi|110683816|gb|ABG87186.1| ribosome-associated GTPase EngA [Clostridium perfringens SM101]
 gi|169299237|gb|EDS81307.1| putative GTP-binding protein Era [Clostridium perfringens C str.
           JGS1495]
 gi|170661368|gb|EDT14051.1| putative GTP-binding protein Era [Clostridium perfringens E str.
           JGS1987]
 gi|170711316|gb|EDT23498.1| putative GTP-binding protein Era [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714259|gb|EDT26441.1| putative GTP-binding protein Era [Clostridium perfringens CPE str.
           F4969]
 gi|177908885|gb|EDT71377.1| putative GTP-binding protein Era [Clostridium perfringens D str.
           JGS1721]
 gi|182380862|gb|EDT78341.1| putative GTP-binding protein Era [Clostridium perfringens NCTC
           8239]
          Length = 438

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N L  ++  IV+++PGTTRD +   L+ E     + DTAG+R  
Sbjct: 178 RIAMIGKPNVGKSSLINRLLGEERVIVSNVPGTTRDSIDSYLETEDGKFILVDTAGLRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E+  + RT+  +E AD+ +L+
Sbjct: 238 SKVKEEIERYSVIRTYAAIEKADVAILV 265



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN LA K ++IV D PG TRD +  + +       + DT GI  E+
Sbjct: 6   VAMVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAESEWLNRKFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            DI+ K+  ++  + +E AD+I+ +
Sbjct: 66  SDIIVKQMRRQAQIAIEMADVIVFV 90


>gi|218767960|ref|YP_002342472.1| GTP-binding protein EngA [Neisseria meningitidis Z2491]
 gi|26006740|sp|Q9JV01|DER_NEIMA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|121051968|emb|CAM08277.1| putative GTP-binding protein [Neisseria meningitidis Z2491]
          Length = 485

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|332534677|ref|ZP_08410508.1| GTP-binding protein EngA [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035889|gb|EGI72371.1| GTP-binding protein EngA [Pseudoalteromonas haloplanktis ANT/505]
          Length = 476

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  +D  IV D+PGTTRD + I +        + DTAG+R  
Sbjct: 191 KLAIIGRPNVGKSTLTNRILGEDRVIVYDMPGTTRDSIYIPMTRNDKEYVLIDTAGVRKR 250

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  D+VEK  + +T   +E+ +++LL+  ++++  IS
Sbjct: 251 KKVSDVVEKFSVIKTLQAIEDCNVVLLV--VDARDGIS 286



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 43/75 (57%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKS+LFN L +   A+V D PG TRD        +GY   + DT GI  +++ +E E   
Sbjct: 2   GKSTLFNRLTRTRDALVADFPGLTRDRKYGQASYDGYEFIVVDTGGIDGSEEGIEIEMAD 61

Query: 291 RTFLEVENADLILLL 305
           ++ L +E AD++L L
Sbjct: 62  QSLLAIEEADIVLFL 76


>gi|291166767|gb|EFE28813.1| ribosome-associated GTPase EngA [Filifactor alocis ATCC 35896]
          Length = 437

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 29/179 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  NAGKSS+ N +  ++  IV+ I GTTRD +     ++       DTAGIR+ 
Sbjct: 177 KVAIVGKPNAGKSSIINRILGEERVIVSPIAGTTRDAIDTYFHVKDQEYLFIDTAGIRKK 236

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKE-----ISFPKNIDFIFIGTKS 329
              D+ +EK  + R++  VE AD++L++ + N   S+++     ++       + +  K 
Sbjct: 237 SKIDENIEKYSVIRSYAAVERADVVLIVIDANIGISEQDSKIAGLAHNAGKSTVIVVNKW 296

Query: 330 DLY-------STYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLP 370
           DL         TYTE                +S+ TG+   ++I  I ++     K++P
Sbjct: 297 DLVEKDNKSIQTYTESIRQELPFMSYAPIIFVSTTTGQRFGKIIESINAVYQESQKRVP 355



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+LFN L    VAIV D PG TRD +  + +       + DT GI  ++
Sbjct: 5   VAIVGRPNVGKSTLFNKLVGSRVAIVEDTPGVTRDRIYGEAEWLTDYFTVIDTGGIDNDS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI+  +  ++  L ++ AD+IL +
Sbjct: 65  DDIIPAQMRRQAELAMDTADVILFV 89


>gi|282890013|ref|ZP_06298547.1| hypothetical protein pah_c009o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500105|gb|EFB42390.1| hypothetical protein pah_c009o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 493

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKS+LFN +  K +AIV +  G TRD L  + DL G   ++ DT GI   
Sbjct: 11  KLALVGRPNVGKSALFNKICGKKIAIVDEAEGVTRDRLYAEADLFGRHFQVIDTGGINPR 70

Query: 281 DDIVEKEGIKRTF-LEVENADLILLL 305
            D    E +KR   + +E AD I+++
Sbjct: 71  SDAPFNEEVKRQAEIAIEEADTIVMV 96



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 31/177 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           I I+G  N GKSSL N L  +   IV+ IPGTTRD + +      +   + DTAGIR   
Sbjct: 185 IAIIGRPNVGKSSLINYLLDEQRCIVSPIPGTTRDSVDVSFTHNEHAYTLIDTAGIRRKH 244

Query: 281 --DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-KNI---------DFIFIGTK 328
              ++V+K    RT   +  AD+ LL+  ++S++ I+   K I           I +  K
Sbjct: 245 SEHEVVDKFAAIRTERAIARADICLLV--LDSQQGITVQEKRIANLIEEAGKGCILLFNK 302

Query: 329 SDLYSTYTEEY------------DH----LISSFTGEGLEELINKIKSILSNKFKKL 369
            DL   +  E+            +H     +S+ TG  +E++  +I+++  N  K++
Sbjct: 303 WDLVKGFRMEHCLKEIESEASFLNHCPKIFMSAKTGRNVEKIFEEIQTVHENSQKRI 359


>gi|242255964|gb|ACS88966.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|261400171|ref|ZP_05986296.1| ribosome-associated GTPase EngA [Neisseria lactamica ATCC 23970]
 gi|269210170|gb|EEZ76625.1| ribosome-associated GTPase EngA [Neisseria lactamica ATCC 23970]
          Length = 485

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|122702735|emb|CAL88557.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|292806692|gb|ADE42476.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLNAAQMSDLIL 90


>gi|282880854|ref|ZP_06289547.1| ribosome-associated GTPase EngA [Prevotella timonensis CRIS 5C-B1]
 gi|281305236|gb|EFA97303.1| ribosome-associated GTPase EngA [Prevotella timonensis CRIS 5C-B1]
          Length = 437

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  N GKSS+ NA   +D  IVT+I GTTRD +    D  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRK 236

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
           + + E      + R+   +EN+D+ +L+
Sbjct: 237 NKVTEDLEFYSVMRSIHSIENSDVCILM 264



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSRKAIVSDTAGTTRDRQYGKCSWNGREFSVVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DDI E    K+  +  E ADL+L + ++ +
Sbjct: 65  DDIFEDAIRKQVVVATEEADLVLFVVDVKN 94


>gi|319763709|ref|YP_004127646.1| ribosome-associated gtpase enga [Alicycliphilus denitrificans BC]
 gi|330824028|ref|YP_004387331.1| ribosome-associated GTPase EngA [Alicycliphilus denitrificans K601]
 gi|317118270|gb|ADV00759.1| ribosome-associated GTPase EngA [Alicycliphilus denitrificans BC]
 gi|329309400|gb|AEB83815.1| ribosome-associated GTPase EngA [Alicycliphilus denitrificans K601]
          Length = 447

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  ++ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG+
Sbjct: 178 NVIRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQKFELIDTAGL 237

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R    +   +EK  + +T   +E+A+++LLL
Sbjct: 238 RRKGKVFEAIEKFSVVKTLQAIESANVVLLL 268



 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD    +     +   + DT G   + 
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGRQGKHEFIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
              + +E  K+T   V  AD+++ + ++
Sbjct: 65  SSGIYREMAKQTQQAVAEADVVIFVVDV 92


>gi|292806444|gb|ADE42352.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKAINLKAAQMSDLIL 90


>gi|293394879|ref|ZP_06639169.1| ribosome-associated GTPase EngA [Serratia odorifera DSM 4582]
 gi|291422630|gb|EFE95869.1| ribosome-associated GTPase EngA [Serratia odorifera DSM 4582]
          Length = 497

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE     ++ L +E AD++L +
Sbjct: 65  DGVETRMAGQSLLAIEEADIVLFM 88



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 210 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 269

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A+++LL+  +++++ IS
Sbjct: 270 GKVTETVEKFSVIKTLQAIEDANVVLLV--VDAREGIS 305


>gi|212690523|ref|ZP_03298651.1| hypothetical protein BACDOR_00005 [Bacteroides dorei DSM 17855]
 gi|212666872|gb|EEB27444.1| hypothetical protein BACDOR_00005 [Bacteroides dorei DSM 17855]
          Length = 455

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 195 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYEKFGFDFYLVDTAGIRKK 254

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 255 NKVNEDLEYYSVIRSIRSIENSDVCILM 282



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 7/114 (6%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I ++K D  S  ++ K+G ++       I+G  N GKS+LFN L K   AIV +  GTTR
Sbjct: 3   IKWIKIDCDSRKTRKKMGNLV------AIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTR 56

Query: 256 DVLTIDLDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           D      +  G+   + DT G +  + D+ E+E  K+  L ++ AD+IL + ++
Sbjct: 57  DRQYGKSEWVGHEFSVVDTGGWVVNSGDVFEEEIRKQVSLAIDEADVILFVVDV 110


>gi|122702493|emb|CAL88437.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L+++ +AI +D+ GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLSRERIAITSDLAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  TLLSKEIKALNLKAAQMSDLIL 90


>gi|304436527|ref|ZP_07396500.1| ribosome-associated GTPase EngA [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370470|gb|EFM24122.1| ribosome-associated GTPase EngA [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 442

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + ++G  N GKS+LFN + KK V+IV D+PG TRD + +D +   +   I DT GI   E
Sbjct: 6   VAVVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYLDAEWLNHEFTIIDTGGIEFDE 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           +D I+ +    +  L +E AD+IL L
Sbjct: 66  SDHIL-RSMRSQAELAMEEADVILFL 90



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL N L  ++  IV+D+PGTTRD +      +G    + DTAG+R   
Sbjct: 179 IAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDTHFTKDGAKYLLIDTAGMRRKG 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            I   VE+  + R+   ++ A ++L++
Sbjct: 239 KITLPVERYSVMRSLRAIDRAGVVLMV 265


>gi|294140150|ref|YP_003556128.1| GTP-binding protein EngA [Shewanella violacea DSS12]
 gi|293326619|dbj|BAJ01350.1| GTP-binding protein EngA [Shewanella violacea DSS12]
          Length = 490

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ EG    + DTAG+R  
Sbjct: 201 KLAIIGKPNVGKSTLINRILGEERVVVYDSPGTTRDSIYIPMEREGREYVLIDTAGVRRR 260

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+ +++LL+  I++++ I+
Sbjct: 261 SKVHETVEKFSVIKTLKAIEDCNVVLLI--IDAREGIA 296



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRASLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E    +++   +E AD++L L +  +
Sbjct: 65  EGIEVHMAEQSLAAIEEADVVLFLTDARA 93


>gi|237708020|ref|ZP_04538501.1| GTP-binding protein EngA [Bacteroides sp. 9_1_42FAA]
 gi|265754193|ref|ZP_06089382.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_33FAA]
 gi|229458006|gb|EEO63727.1| GTP-binding protein EngA [Bacteroides sp. 9_1_42FAA]
 gi|263234902|gb|EEZ20457.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_33FAA]
          Length = 437

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYEKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 237 NKVNEDLEYYSVIRSIRSIENSDVCILM 264



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G+   + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             + D+ E+E  K+  L ++ AD+IL + ++
Sbjct: 62  VNSGDVFEEEIRKQVSLAIDEADVILFVVDV 92


>gi|83647146|ref|YP_435581.1| GTP-binding protein EngA [Hahella chejuensis KCTC 2396]
 gi|123531965|sp|Q2SDW8|DER_HAHCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|83635189|gb|ABC31156.1| predicted GTPase [Hahella chejuensis KCTC 2396]
          Length = 472

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G +I I+G  N GKS+L N L  +D  +V D PGTTRD + I  +  G    + DTAG+
Sbjct: 174 SGIRIGIIGRPNVGKSTLVNRLLGEDRVVVFDQPGTTRDSVYIPYERLGERYTLIDTAGV 233

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R   ++   VEK  I +T   +++A +++L+
Sbjct: 234 RRRKNVSEAVEKFSIVKTLQAIKDAHVVVLV 264



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + +   AIV ++PG TRD    + +LEG    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRMTRSRDAIVANLPGLTRDRKYGEGELEGKHYIVVDTGGITGEE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     ++F  +  AD++L +
Sbjct: 65  QGIDAAMAGQSFTAMNEADVVLFV 88


>gi|292806550|gb|ADE42405.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806552|gb|ADE42406.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|294670887|ref|ZP_06735743.1| hypothetical protein NEIELOOT_02591 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307374|gb|EFE48617.1| hypothetical protein NEIELOOT_02591 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 491

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       L      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGRLGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL----------KEINSKKEISFPKNIDFIFIGTKSD 330
           D  +  E  K+T   V+ AD ++ L           +I + +    P+ +       +  
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKI 358
            +     E+        H+IS   G+G+  LI K+
Sbjct: 125 RHDVLAAEFYELALGEPHVISGAHGDGVYHLIEKV 159


>gi|289435286|ref|YP_003465158.1| GTPase family protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171530|emb|CBH28074.1| GTPase family protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|313632616|gb|EFR99602.1| ribosome-associated GTPase EngA [Listeria seeligeri FSL N1-067]
 gi|313637164|gb|EFS02696.1| ribosome-associated GTPase EngA [Listeria seeligeri FSL S4-171]
          Length = 436

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 5/115 (4%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + +H  + +  E   +  K  ++G  N GKSS+ NAL  +D  IV+DI GTTRD +    
Sbjct: 159 VRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTY 218

Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             +G    + DTAG+R+   +    EK  + R    +E +D++L++  IN+++ I
Sbjct: 219 TFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVV--INAEEGI 271



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKDFNIIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++   +  + ++ AD+I+ +
Sbjct: 66  EPFLEQIRAQAEIAIDEADVIIFI 89


>gi|150003043|ref|YP_001297787.1| GTP-binding protein EngA [Bacteroides vulgatus ATCC 8482]
 gi|254883681|ref|ZP_05256391.1| GTP-binding protein engA [Bacteroides sp. 4_3_47FAA]
 gi|294775667|ref|ZP_06741175.1| ribosome-associated GTPase EngA [Bacteroides vulgatus PC510]
 gi|319642181|ref|ZP_07996841.1| GTP-binding protein engA [Bacteroides sp. 3_1_40A]
 gi|166224306|sp|A6KXK1|DER_BACV8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|149931467|gb|ABR38165.1| putative phosphoglycerate dehydrogenase [Bacteroides vulgatus ATCC
           8482]
 gi|254836474|gb|EET16783.1| GTP-binding protein engA [Bacteroides sp. 4_3_47FAA]
 gi|294450511|gb|EFG19003.1| ribosome-associated GTPase EngA [Bacteroides vulgatus PC510]
 gi|317386167|gb|EFV67086.1| GTP-binding protein engA [Bacteroides sp. 3_1_40A]
          Length = 437

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYEKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 237 NKVSEDLEYYSVIRSIRSIENSDVCILM 264



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G+   + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +DD+ E+E  K+  L ++ AD+IL + ++
Sbjct: 62  VNSDDVFEEEIRKQVSLAIDEADVILFVVDV 92


>gi|122702405|emb|CAL88393.1| GTPase [Helicobacter pylori]
 gi|122702411|emb|CAL88396.1| GTPase [Helicobacter pylori]
 gi|122702413|emb|CAL88397.1| GTPase [Helicobacter pylori]
 gi|122702415|emb|CAL88398.1| GTPase [Helicobacter pylori]
 gi|122702419|emb|CAL88400.1| GTPase [Helicobacter pylori]
          Length = 168

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
             + KE         + +DLIL
Sbjct: 67  AFLSKEIKAFNLKAAQMSDLIL 88


>gi|15834701|ref|NP_296460.1| GTP-binding protein EngA [Chlamydia muridarum Nigg]
 gi|270284867|ref|ZP_06194261.1| GTP-binding protein EngA [Chlamydia muridarum Nigg]
 gi|301336246|ref|ZP_07224448.1| GTP-binding protein EngA [Chlamydia muridarum MopnTet14]
 gi|14194736|sp|Q9PLM3|DER_CHLMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|7190111|gb|AAF38958.1| GTP-binding protein, Era/ThdF family [Chlamydia muridarum Nigg]
          Length = 490

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           +I ILG  N GKSS+FN L K+ +AIV    GTTRD L  ++     +V + DT G+ +E
Sbjct: 2   RIAILGRPNVGKSSIFNRLCKRSLAIVNAQEGTTRDRLYGEIRAWDSIVHVIDTGGVDQE 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI 308
           + D  +K+  K+     E A ++LL+ +I
Sbjct: 62  STDRFQKQIHKQALAAAEEASVLLLVVDI 90



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++Q     I     K+ ++GH N GKSS+ NAL K++  I  + PGTTRD + +      
Sbjct: 214 VAQTTTPSISNRPLKVALIGHPNVGKSSIVNALLKEERCITDNSPGTTRDNVDVSYTYND 273

Query: 267 YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
                 DTAG+R+   I   VE     RT   +  AD+ LL+  I++ +++S+
Sbjct: 274 KEYVFIDTAGLRKAKSIKNSVEWMSSSRTEKAISRADICLLV--IDATQQLSY 324


>gi|160886572|ref|ZP_02067575.1| hypothetical protein BACOVA_04583 [Bacteroides ovatus ATCC 8483]
 gi|156108457|gb|EDO10202.1| hypothetical protein BACOVA_04583 [Bacteroides ovatus ATCC 8483]
          Length = 396

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I + G  N+GKSSL NAL  +D A+V+D PGTT D+++  ++++G       DT G  + 
Sbjct: 14  IALFGRRNSGKSSLINALTGQDTALVSDTPGTTTDLVSKAMEIQGIGPCLFIDTPGFDDE 73

Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------KEINS---KKEISFPKNIDFIFIGTK 328
            ++ E   I RT   +E  D+ LLL         KE+ +   +K I     ++ I I   
Sbjct: 74  GELGELR-ISRTLKAIEKTDIALLLCGDTTFSHEKEMLTLLKEKNIPVIPVLNKIDIREN 132

Query: 329 SDLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKF 366
           SD  +TY EE       LIS+    G+E++   I   L + F
Sbjct: 133 SDSLATYIEEEYKIRPLLISAKEKTGIEQIRQAILEKLPSDF 174


>gi|122701447|emb|CAL88113.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DL+L
Sbjct: 69  ALLSKEIKALNLKAAQMSDLVL 90


>gi|313203779|ref|YP_004042436.1| ribosome-associated GTPase enga [Paludibacter propionicigenes WB4]
 gi|312443095|gb|ADQ79451.1| ribosome-associated GTPase EngA [Paludibacter propionicigenes WB4]
          Length = 437

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 24/169 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV D  GTTRD      + EG    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTKSRRAIVNDEAGTTRDRQYGKCEWEGREFSVIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             + D+ E E  +   L +E AD+IL L +I +          +I   +    + +  K+
Sbjct: 62  INSSDVFEGEIKRHVVLAIEEADVILFLVDIQNGITDYDLEVAQILRGQTKPVMLVSNKA 121

Query: 330 DLYSTYTEEY------------DHLISSFTGEGLEELINKIKSILSNKF 366
           D   T+  +Y             H+IS+  G G  + ++K+ +     F
Sbjct: 122 D---TFEWQYGVAEFYKLGLGEPHMISAINGLGTGDFLDKLLTYFKPDF 167



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   ++  IVTDI GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIINAFVGEERTIVTDIAGTTRDSIYTRFNKFGHDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +EN D+ +L+
Sbjct: 237 AKVNEDLEYYSVVRSIRAIENCDVCILM 264


>gi|308270408|emb|CBX27020.1| GTP-binding protein engA [uncultured Desulfobacterium sp.]
          Length = 442

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKSSL N +  KD  IV+D+PGTTRD +    +++G    I DTAGIR  
Sbjct: 176 KVAVIGRPNVGKSSLINRILGKDRHIVSDVPGTTRDAVDSLCEIKGKQYLIIDTAGIRRK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  I +    ++  D+ L++
Sbjct: 236 SKVSKKIEKFSIIKALKSLDRCDIALII 263



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           I I+G  N GKS+ FN + +   AIV D PG TRD +  D         + DT G    +
Sbjct: 5   ITIVGRPNVGKSTFFNRVTRSKDAIVDDFPGVTRDCIHRDAVWNDVEFTLVDTGGFAYGD 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            DDI  K  ++     +++AD I+++
Sbjct: 65  EDDINSKVRMQ-VKQSIDDADAIIMM 89


>gi|295696375|ref|YP_003589613.1| ribosome-associated GTPase EngA [Bacillus tusciae DSM 2912]
 gi|295411977|gb|ADG06469.1| ribosome-associated GTPase EngA [Bacillus tusciae DSM 2912]
          Length = 451

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 5/106 (4%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           GE   +  ++ ++G  N GKSSL N L  ++  +V++IPGTTRD +    + EG+   + 
Sbjct: 177 GEPDHDAIRVAVIGRPNVGKSSLVNRLLGEERVLVSEIPGTTRDAVDTLFEREGHSFILI 236

Query: 273 DTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           DTAG+R+   +    EK  + R    ++ +D+ LL+  I+ K+ I+
Sbjct: 237 DTAGLRKRGRVWEDTEKYSVLRALRAIDRSDVCLLV--IDGKQGIA 280



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 212 LGEIIRN--GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +G++++   G  + I+G  N GKS+LFN +    +AIV D PG TRD L       G   
Sbjct: 1   MGKVVKAMPGGLVAIVGRPNVGKSTLFNRIVGGRIAIVEDKPGVTRDRLYALASWNGRGF 60

Query: 270 KISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLL 305
           +I DT G+     D + K    +  L +E AD ++ L
Sbjct: 61  RIIDTGGLDFGGSDAIVKSIRAQVELALEEADAVIFL 97


>gi|122700709|emb|CAL87943.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKAINLKAAQMSDLILYV 92


>gi|57505514|ref|ZP_00371441.1| GTP-binding protein, Era/ThdF family [Campylobacter upsaliensis
           RM3195]
 gi|57016061|gb|EAL52848.1| GTP-binding protein, Era/ThdF family [Campylobacter upsaliensis
           RM3195]
          Length = 457

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI ++I GTTRD   I +++ G    + D+ G+ E++
Sbjct: 4   IILIGKPNVGKSSLFNRIARQRIAITSEISGTTRDTNKIKVNINGKEALLIDSGGLDESN 63

Query: 282 DIVEKEGIKRTFLE-VENADLILLL 305
           ++   + +K+  L   +NAD+IL L
Sbjct: 64  ELF--KNVKQNSLNAAKNADIILYL 86



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 20/158 (12%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213
           L  LY  W++   H       + + S EE ++NF  ++ +                 K  
Sbjct: 149 LDELYA-WLENFLHTSVLKNDEEEQSLEEFLENFDEEKEI-----------------KFK 190

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI  N  KI I+G  N GKSSL NAL K+  ++V+ I GTT D +   +  +  +++  D
Sbjct: 191 EIDENHIKIGIVGRVNVGKSSLLNALVKEQRSVVSSIAGTTIDPVNESVMYKDKVLEFID 250

Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEIN 309
           TAGIR+   I  +E+  + RT   ++N+ + LL+ + N
Sbjct: 251 TAGIRKRGKIQGIERFALNRTEKMLQNSQIALLVLDAN 288


>gi|310642585|ref|YP_003947343.1| gtp-binding protein enga [Paenibacillus polymyxa SC2]
 gi|309247535|gb|ADO57102.1| GTP-binding protein engA [Paenibacillus polymyxa SC2]
          Length = 440

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL NA+  ++  IV+DI GTTRD +    + +G    + DTAG+R+ 
Sbjct: 178 RVALIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAIDTPFEKDGQKYVLIDTAGMRKR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E AD++L++
Sbjct: 238 GKVYETTEKYSVMRAMRAIERADVVLVV 265



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS++FN +    ++IV D PG TRD +    +  G    I DT GI  + 
Sbjct: 6   VAIVGRPNVGKSTIFNRIIGDRLSIVEDKPGITRDRIYGISEWNGKSFSIIDTGGIEIDG 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
           +D++ K    +  L +E AD+I+ + +
Sbjct: 66  EDVILKSIRMQAELAIEEADVIVFMSD 92


>gi|242255924|gb|ACS88946.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQVSDLIL 90


>gi|126640577|ref|YP_001083561.1| GTP-binding protein EngA [Acinetobacter baumannii ATCC 17978]
          Length = 399

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N L  +D  +  D PGTTRD + I  + EG    + DTAG+R
Sbjct: 106 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVR 165

Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299
              + D+++EK  I +T   +++A
Sbjct: 166 RKGKVDEMIEKFSIVKTLQAMKDA 189


>gi|122700627|emb|CAL87902.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKAFNLKAAQMSDLILYV 92


>gi|88703668|ref|ZP_01101384.1| GTP-binding protein engA [Congregibacter litoralis KT71]
 gi|88702382|gb|EAQ99485.1| GTP-binding protein engA [Congregibacter litoralis KT71]
          Length = 495

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N +  ++  +V D PGTTRD + I    EG    + DTAG+R
Sbjct: 198 GTRVAIVGRPNVGKSTLVNRILGEERVVVYDQPGTTRDSVYIKFVREGRPYTLIDTAGVR 257

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305
              ++   +EK  I +T   + +A++++LL
Sbjct: 258 RRKNVREAIEKFSIIKTLSAISDANVVVLL 287



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V ++ G TRD    +   +     + DT G+   +
Sbjct: 5   IALVGRPNVGKSTLFNQLTRSRDALVANLSGLTRDRKYGEGRSDDRAFIVIDTGGVSGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++    +++ L +E AD++LLL
Sbjct: 65  EGIDAAMAEQSLLAIEEADIVLLL 88


>gi|308069529|ref|YP_003871134.1| GTP-binding protein engA [Paenibacillus polymyxa E681]
 gi|305858808|gb|ADM70596.1| GTP-binding protein engA [Paenibacillus polymyxa E681]
          Length = 440

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL NA+  ++  IV+DI GTTRD +    + +G    + DTAG+R+ 
Sbjct: 178 RVALIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAIDTPFEKDGQKYVLIDTAGMRKR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E AD++L++
Sbjct: 238 GKVYETTEKYSVMRAMRAIERADVVLVV 265



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS++FN +    ++IV D PG TRD +    +  G    I DT GI  + 
Sbjct: 6   VAIVGRPNVGKSTIFNRIIGDRLSIVEDKPGITRDRIYGISEWNGKSFSIIDTGGIEIDG 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
           +D++ K    +  L +E AD+I+ + +
Sbjct: 66  EDVILKSIRMQAELAIEEADVIVFMSD 92


>gi|122702747|emb|CAL88563.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702853|emb|CAL88616.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQISDLIL 90


>gi|293373216|ref|ZP_06619578.1| small GTP-binding protein domain protein [Bacteroides ovatus SD CMC
           3f]
 gi|292631864|gb|EFF50480.1| small GTP-binding protein domain protein [Bacteroides ovatus SD CMC
           3f]
          Length = 395

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 80/161 (49%), Gaps = 17/161 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I   G  N+GKSSL NAL  +D A+V+D PGTT D+++  ++++G       DT G  + 
Sbjct: 14  IAFFGRRNSGKSSLINALTGQDTALVSDTPGTTTDLVSKAMEIQGIGPCLFIDTPGFDDE 73

Query: 281 DDIVEKEGIKRTFLEVENADLILLL--------KEINS---KKEISFPKNIDFIFIGTKS 329
            ++ E   I RT   +E  D+ LLL        KE+ +   +K I     ++ I I   S
Sbjct: 74  GELGELR-ISRTLKAIEKTDIALLLCGDTFSHEKEMLALLKEKNIPVIPVLNKIDIRENS 132

Query: 330 DLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKF 366
           D  +TY EE       LIS+    G+E++   I   L + F
Sbjct: 133 DSLATYIEEECKIRPLLISAKEKTGIEQIRQAILEKLPSDF 173


>gi|16803976|ref|NP_465461.1| GTP-binding protein EngA [Listeria monocytogenes EGD-e]
 gi|46908170|ref|YP_014559.1| GTP-binding protein EngA [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|217963911|ref|YP_002349589.1| GTP-binding protein EngA [Listeria monocytogenes HCC23]
 gi|224498613|ref|ZP_03666962.1| GTP-binding protein EngA [Listeria monocytogenes Finland 1988]
 gi|224501264|ref|ZP_03669571.1| GTP-binding protein EngA [Listeria monocytogenes FSL R2-561]
 gi|226224541|ref|YP_002758648.1| hypothetical protein Lm4b_01954 [Listeria monocytogenes Clip81459]
 gi|254825568|ref|ZP_05230569.1| GTPase [Listeria monocytogenes FSL J1-194]
 gi|254827178|ref|ZP_05231865.1| GTPase [Listeria monocytogenes FSL N3-165]
 gi|254831462|ref|ZP_05236117.1| GTP-binding protein EngA [Listeria monocytogenes 10403S]
 gi|254899366|ref|ZP_05259290.1| GTP-binding protein EngA [Listeria monocytogenes J0161]
 gi|254912495|ref|ZP_05262507.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254931892|ref|ZP_05265251.1| GTPase [Listeria monocytogenes HPB2262]
 gi|254936822|ref|ZP_05268519.1| GTPase [Listeria monocytogenes F6900]
 gi|254993214|ref|ZP_05275404.1| GTP-binding protein EngA [Listeria monocytogenes FSL J2-064]
 gi|255028956|ref|ZP_05300907.1| GTP-binding protein EngA [Listeria monocytogenes LO28]
 gi|284802382|ref|YP_003414247.1| GTP-binding protein EngA [Listeria monocytogenes 08-5578]
 gi|284995524|ref|YP_003417292.1| GTP-binding protein EngA [Listeria monocytogenes 08-5923]
 gi|290892097|ref|ZP_06555093.1| GTPase [Listeria monocytogenes FSL J2-071]
 gi|300763753|ref|ZP_07073750.1| GTPase [Listeria monocytogenes FSL N1-017]
 gi|26006722|sp|Q8Y5W8|DER_LISMO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|67460310|sp|Q71Y78|DER_LISMF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783158|sp|B8DBY9|DER_LISMH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|259645882|sp|C1KWN7|DER_LISMC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|16411390|emb|CAD00015.1| lmo1937 [Listeria monocytogenes EGD-e]
 gi|46881440|gb|AAT04736.1| GTPase family protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|217333181|gb|ACK38975.1| GTP-binding protein EngA [Listeria monocytogenes HCC23]
 gi|225877003|emb|CAS05712.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258599561|gb|EEW12886.1| GTPase [Listeria monocytogenes FSL N3-165]
 gi|258609417|gb|EEW22025.1| GTPase [Listeria monocytogenes F6900]
 gi|284057944|gb|ADB68885.1| GTP-binding protein EngA [Listeria monocytogenes 08-5578]
 gi|284060991|gb|ADB71930.1| GTP-binding protein EngA [Listeria monocytogenes 08-5923]
 gi|290558220|gb|EFD91738.1| GTPase [Listeria monocytogenes FSL J2-071]
 gi|293583444|gb|EFF95476.1| GTPase [Listeria monocytogenes HPB2262]
 gi|293590479|gb|EFF98813.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|293594811|gb|EFG02572.1| GTPase [Listeria monocytogenes FSL J1-194]
 gi|300515489|gb|EFK42539.1| GTPase [Listeria monocytogenes FSL N1-017]
 gi|307571519|emb|CAR84698.1| GTPase family protein [Listeria monocytogenes L99]
 gi|313607930|gb|EFR84070.1| ribosome-associated GTPase EngA [Listeria monocytogenes FSL F2-208]
 gi|328466285|gb|EGF37442.1| GTP-binding protein Der [Listeria monocytogenes 1816]
 gi|328472780|gb|EGF43629.1| GTP-binding protein Der [Listeria monocytogenes 220]
 gi|332312377|gb|EGJ25472.1| GTPase Der [Listeria monocytogenes str. Scott A]
          Length = 436

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 5/115 (4%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + +H  + +  E   +  K  ++G  N GKSS+ NAL  +D  IV+DI GTTRD +    
Sbjct: 159 VRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTY 218

Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             +G    + DTAG+R+   +    EK  + R    +E +D++L++  IN+++ I
Sbjct: 219 TFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVV--INAEEGI 271



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++   +  + ++ AD+I+ +
Sbjct: 66  EPFLEQIRAQAEIAIDEADVIIFI 89


>gi|325479528|gb|EGC82624.1| ribosome biogenesis GTPase Der [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 439

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 3/99 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E I +  +I I+G  NAGKSSL N L  +D  IVTDI GTTRD +            + D
Sbjct: 170 EAIEDETRIAIIGKPNAGKSSLVNLLLNEDRMIVTDIAGTTRDAVDSYWTYNDNNYVLID 229

Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEIN 309
           TAG+R    +   VE    +RTF  V++A++ L L + N
Sbjct: 230 TAGLRRKSKVKENVEYYANQRTFDAVDSAEVCLFLIDAN 268



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 30/165 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + ++G +N GKS+LFN L  K  +I  D+ G TRD +   ++ +     + DT G+    
Sbjct: 6   VTLVGRTNVGKSTLFNRLVGKKKSITEDVSGVTRDRIVDKVEWQNNEFLLVDTGGLDISN 65

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326
           +E  +   K  +++  LE    D+IL +  ++ K+ ++ P +ID            I + 
Sbjct: 66  KEIMNTEVKSQVEKALLE---TDMILFV--VDGKEGVN-PYDIDIANEIRKYNKPVIIVA 119

Query: 327 TK-------SDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSIL 362
            K        D+Y  Y   +D L  IS+   +GL +L++KI S +
Sbjct: 120 NKLDSFKIPDDIYDFYQFGFDDLSMISAEQSKGLGDLLDKIISFI 164


>gi|325124482|gb|ADY84005.1| GTP-binding protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 469

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N L  +D  +  D PGTTRD + I  + EG    + DTAG+R
Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVR 235

Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299
              + D+++EK  I +T   +++A
Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDA 259



 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN + K   A+V D  G TRD
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39


>gi|258647985|ref|ZP_05735454.1| ribosome-associated GTPase EngA [Prevotella tannerae ATCC 51259]
 gi|260851826|gb|EEX71695.1| ribosome-associated GTPase EngA [Prevotella tannerae ATCC 51259]
          Length = 437

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  NAGKSSL NA   ++  IVTDI GTTRD +    D  G+   + DTAGIR+   +
Sbjct: 180 IVGRPNAGKSSLINAFIGEERNIVTDIAGTTRDSILTRYDKFGFDFYLVDTAGIRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
              +E   + R+   +E++D+ +LL
Sbjct: 240 NEDLEFYSVMRSIRAIEHSDVCILL 264



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L     AIV++  GTTRD      +  G +  I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTGTRQAIVSEEAGTTRDRQYGKCEWGGQIFSIVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI E E  K+  +  E ADLIL L
Sbjct: 65  DDIFEGEIRKQVLVATEEADLILFL 89


>gi|220917392|ref|YP_002492696.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955246|gb|ACL65630.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 465

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN LA + VAIV D+PG TRD    D+  EG  V + DT G   E+
Sbjct: 8   VALVGRPNVGKSTLFNRLAGRRVAIVEDVPGVTRDRNYADVIWEGRAVSVVDTGGFEPES 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D +  +  ++  L V+ A  ++L+
Sbjct: 68  RDRLMSQVREQAQLAVDEASAVVLV 92



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKS+  NAL  ++  +V+D+PGTTRD +   +  +G    ++DTAGIR  
Sbjct: 197 RLAIVGRPNVGKSTFVNALLGEERFVVSDVPGTTRDAIDSLVAHKGRRFVVTDTAGIRRK 256

Query: 281 DDIVEK 286
             I +K
Sbjct: 257 RSIAQK 262


>gi|122702645|emb|CAL88512.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMVK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|116873379|ref|YP_850160.1| GTP-binding protein EngA [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123458584|sp|A0AK49|DER_LISW6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|116742257|emb|CAK21381.1| GTPase family protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 436

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 5/115 (4%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + +H  + +  E   +  K  ++G  N GKSS+ NAL  +D  IV+DI GTTRD +    
Sbjct: 159 VRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTY 218

Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             +G    + DTAG+R+   +    EK  + R    +E +D++L++  IN+++ I
Sbjct: 219 TFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVV--INAEEGI 271



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++   +  + ++ AD+I+ +
Sbjct: 66  EPFLEQIRAQAEIAIDEADVIIFI 89


>gi|319956402|ref|YP_004167665.1| ribosome-associated GTPase enga [Nitratifractor salsuginis DSM
           16511]
 gi|319418806|gb|ADV45916.1| ribosome-associated GTPase EngA [Nitratifractor salsuginis DSM
           16511]
          Length = 462

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 54/91 (59%), Gaps = 12/91 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAG 276
           K+ ILG  N GKSSLFN LA+K  AI +D+ GTTRD    ++TI  D E  L+   DT G
Sbjct: 3   KVAILGRPNVGKSSLFNRLARKRDAITSDVSGTTRDIKKNIVTISEDREFELL---DTGG 59

Query: 277 IRETDDIVEK--EGIKRTFLEVENADLILLL 305
           I E+D +  K  E  KR   E   AD+IL +
Sbjct: 60  IDESDALFSKVAEMSKRAAKE---ADVILYM 87



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ILG  N GKSSL NAL  ++ ++V+++ GTT D +   +    Y +   DTAGIR  
Sbjct: 199 KVAILGRPNVGKSSLLNALLGEERSVVSEVAGTTIDPVDETIIHGDYEITFVDTAGIRRR 258

Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305
             I  +EK  + RT   ++ AD+ LLL
Sbjct: 259 SKILGIEKYALGRTEKMLQEADIALLL 285


>gi|262371080|ref|ZP_06064402.1| GTPase [Acinetobacter johnsonii SH046]
 gi|262313966|gb|EEY95011.1| GTPase [Acinetobacter johnsonii SH046]
          Length = 469

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G ++ I+G  N GKS+L N L  ++  +  D PGTTRD + I  + +G    + DTAG+
Sbjct: 175 TGLRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPYERDGRQYTLIDTAGV 234

Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305
           R   + D+++EK  I +T   +++A +I+++
Sbjct: 235 RRKGKVDEMIEKFSIVKTLQAIKDAHVIVVV 265



 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN + K   A+V D  G TRD
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39


>gi|260549069|ref|ZP_05823290.1| small GTP-binding domain-containing protein [Acinetobacter sp.
           RUH2624]
 gi|260407797|gb|EEX01269.1| small GTP-binding domain-containing protein [Acinetobacter sp.
           RUH2624]
          Length = 469

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N L  +D  +  D PGTTRD + I  + EG    + DTAG+R
Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVR 235

Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299
              + D+++EK  I +T   +++A
Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDA 259



 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN + K   A+V D  G TRD
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39


>gi|255323406|ref|ZP_05364537.1| ribosome-associated GTPase EngA [Campylobacter showae RM3277]
 gi|255299443|gb|EET78729.1| ribosome-associated GTPase EngA [Campylobacter showae RM3277]
          Length = 467

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   ++ I+G  N GKSSL NAL K+  A+V+DI GTT D +      E  + +  DTAG
Sbjct: 197 RKNIQVGIIGRVNVGKSSLLNALVKESRAVVSDIAGTTIDPVNETFVYEDRVFEFVDTAG 256

Query: 277 IRETDDI--VEKEGIKRTFLEVENADLILLL 305
           IR+   I  +E+  + RT   +E AD+ LL+
Sbjct: 257 IRKRGKIEGIERYALNRTESALELADIALLV 287



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI+++G  N GKSSLFN LA + +AI +D+ GTTRD     +++      + D+ G+ ++
Sbjct: 3   KIILVGKPNVGKSSLFNRLAGRRIAITSDVSGTTRDTNKTIIEIYDRSCVLIDSGGLDDS 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            ++ +    K T  E  ++D I+ +
Sbjct: 63  SELFKNVKAK-TLAEARSSDAIIFM 86


>gi|189462216|ref|ZP_03011001.1| hypothetical protein BACCOP_02899 [Bacteroides coprocola DSM 17136]
 gi|189431069|gb|EDV00054.1| hypothetical protein BACCOP_02899 [Bacteroides coprocola DSM 17136]
          Length = 437

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   ++  IVT+I GTTRD +    D  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 237 NKVSEDLEYYSVVRSIRSIENSDVCILM 264



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 22/168 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWLGKEFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             ++DI E+E  K+  L ++ AD++L + ++ +           I        I +  K+
Sbjct: 62  VNSEDIFEEEIRKQVVLAIDEADVVLFVVDVTNGVTDLDMQVASILRRAKTPVIVVANKT 121

Query: 330 ---DLYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKK 368
              DL     E Y       + IS+ +G G  +L++ I S    KFKK
Sbjct: 122 DNNDLQYNAAEFYSLGLGDPYCISALSGSGTGDLLDLIVS----KFKK 165


>gi|148380476|ref|YP_001255017.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932865|ref|YP_001384700.1| GTP-binding protein EngA [Clostridium botulinum A str. ATCC 19397]
 gi|153936714|ref|YP_001388221.1| GTP-binding protein EngA [Clostridium botulinum A str. Hall]
 gi|166224327|sp|A7FW89|DER_CLOB1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166224328|sp|A5I4V0|DER_CLOBH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|148289960|emb|CAL84073.1| putative GTP-binding protein EngA [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928909|gb|ABS34409.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932628|gb|ABS38127.1| ribosome-associated GTPase EngA [Clostridium botulinum A str. Hall]
          Length = 439

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K ++IV D PG TRD +  + +   Y   + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+  +  ++  + +E A++I+ L
Sbjct: 66  EDIIVSQMRRQAQIAIEMANVIIFL 90



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I  +G  N GKSSL N L  ++  IV+DIPGTTRD +   +D +     + DTAG+R   
Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTDFGEFTLIDTAGLRRKS 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   +E+  + RT+  +E AD+ +L+
Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILM 265


>gi|159902929|ref|YP_001550273.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9211]
 gi|226706248|sp|A9BE09|DER_PROM4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|159888105|gb|ABX08319.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str.
           MIT 9211]
          Length = 456

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N++  +  AIV+ I GTTRD +   L  E    K+ DTAGIR  
Sbjct: 179 QLAIIGRPNVGKSSLLNSICGETRAIVSSIRGTTRDTIDTLLKREQQAWKLIDTAGIRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+   +E +D+ LL+
Sbjct: 239 RSVSYGPEYFGINRSLKAIERSDVCLLV 266



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 28/56 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G  N GKS+L N L     AIV D PG TRD    D        K+ DT G+
Sbjct: 6   VAIIGRPNVGKSTLVNRLCGSREAIVDDQPGVTRDRTYQDAFWADREFKVVDTGGL 61


>gi|292806656|gb|ADE42458.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQISDLIL 90


>gi|122702755|emb|CAL88567.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKQKIVLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|189500937|ref|YP_001960407.1| GTP-binding protein EngA [Chlorobium phaeobacteroides BS1]
 gi|238692267|sp|B3EMI7|DER_CHLPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189496378|gb|ACE04926.1| small GTP-binding protein [Chlorobium phaeobacteroides BS1]
          Length = 435

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSS  NAL   +  IV+DIPGTTRD +   L   G  V + DTAG+R+ 
Sbjct: 177 KLAIIGRPNVGKSSFVNALLGTNRHIVSDIPGTTRDAIDSRLKRNGKEVLLIDTAGLRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E     RT   +E  D+ LLL
Sbjct: 237 TKIDRGIEFYSSVRTDKSIERCDVALLL 264



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L++   AI    PG TRD      + +G    + DT G     
Sbjct: 5   VALVGRPNVGKSTLFNRLSRSKSAITDSTPGVTRDRHIASAEWQGRKFMVMDTGGYCHDK 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           D + +  +++T   +  AD+IL + ++ S
Sbjct: 65  DSLNRAMMEQTLAAIAEADVILFMVDVRS 93


>gi|330807651|ref|YP_004352113.1| GTP-binding protein engA [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375759|gb|AEA67109.1| GTP-binding protein engA [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 490

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 31/183 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309
           +R+   I   VEK  + +T   +++A++++ + +                          
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
            +K +   P   DF+ I  +  L+  + +  D H IS+  G G+  L   +++   +   
Sbjct: 313 INKWDGMTPSERDFVKIELQRRLF--FVDFADIHFISALHGTGVGNLYASVQNSFKSAVT 370

Query: 368 KLP 370
           + P
Sbjct: 371 RWP 373



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRTYILVDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD++L L
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFL 88


>gi|237725292|ref|ZP_04555773.1| GTP-binding protein engA [Bacteroides sp. D4]
 gi|229436558|gb|EEO46635.1| GTP-binding protein engA [Bacteroides dorei 5_1_36/D4]
          Length = 437

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYEKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 237 NKVNEDLEYYSVIRSIRSIENSDVCILM 264



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G+   + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +DD+ E+E  K+  L ++ AD+IL + ++
Sbjct: 62  VNSDDVFEEEIRKQVSLAIDEADVILFVVDV 92


>gi|126663301|ref|ZP_01734299.1| GTP-binding protein EngA [Flavobacteria bacterium BAL38]
 gi|126624959|gb|EAZ95649.1| GTP-binding protein EngA [Flavobacteria bacterium BAL38]
          Length = 436

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  +VTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 178 RFCVVGRPNAGKSSFINALIGEDRFVVTDIAGTTRDAIDTRYNRFGFEFNLVDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E++D+ LL+
Sbjct: 238 AKVKEDLEFYSVMRSVRAIEHSDVCLLV 265



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 20/160 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      +  G    + DT G I+ +
Sbjct: 5   VAIVGRPNVGKSTFFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYIKGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLIL------------------LLKEINSKKEISFPKNIDF 322
           DDI E E  K+  L ++ AD I+                  LL+++     +   K  + 
Sbjct: 65  DDIFEAEIRKQVELAIDEADAIIFVVDVEEGITPMDDEVAKLLRKVKKPVLLVINKVDNA 124

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           +      + Y+    EY   IS  +G G  EL++K+  +L
Sbjct: 125 MREKDAVEFYNLGLGEY-FTISGMSGSGTGELLDKLVEVL 163


>gi|157961137|ref|YP_001501171.1| GTP-binding protein EngA [Shewanella pealeana ATCC 700345]
 gi|189037162|sp|A8H249|DER_SHEPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157846137|gb|ABV86636.1| small GTP-binding protein [Shewanella pealeana ATCC 700345]
          Length = 490

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAHLAGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E    +++   +E AD++L L +  +
Sbjct: 65  EGIETRMAEQSLAAIEEADVVLFLTDARA 93



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 201 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERQGREYVLIDTAGVRRR 260

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   VE+++++LL+  I++++ I+
Sbjct: 261 SKVHETVEKFSVIKTLKAVEDSNVVLLV--IDAREGIA 296


>gi|88858476|ref|ZP_01133118.1| GTP-binding protein EngA [Pseudoalteromonas tunicata D2]
 gi|88820093|gb|EAR29906.1| GTP-binding protein EngA [Pseudoalteromonas tunicata D2]
          Length = 492

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  IV D+PGTTRD + I +        + DTAG+R  
Sbjct: 206 KLAIIGRPNVGKSTLTNRILGEERVIVYDMPGTTRDSIYIPMTRNDQEYVLIDTAGVRKR 265

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  D+ EK  + +T   +E+A+++LL+  +++++ IS
Sbjct: 266 KKVSDVAEKFSVIKTLKAIEDANVVLLV--VDAREGIS 301



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD        + Y   + DT GI  ++
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKYDEYEFIVVDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E E  +++ L +E AD+++ L
Sbjct: 65  EGIELEMAEQSLLAIEEADVVMFL 88


>gi|330997747|ref|ZP_08321586.1| ribosome biogenesis GTPase Der [Paraprevotella xylaniphila YIT
           11841]
 gi|329569846|gb|EGG51604.1| ribosome biogenesis GTPase Der [Paraprevotella xylaniphila YIT
           11841]
          Length = 437

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 20/161 (12%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L +   AIV+D  GTTRD      +  G    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTQTRHAIVSDEAGTTRDRQYGKSEWTGCEFSVIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKS 329
             +DDI E+E  K+  L  E AD++L L ++         +   I        I +  K+
Sbjct: 62  VNSDDIFEEEIRKQVTLATEEADVVLFLVDVRNGVTDLDEAVANILRRTKKPVILVANKA 121

Query: 330 D----LYSTYTEEY------DHLISSFTGEGLEELINKIKS 360
           D    +YS   E Y       + IS+ TG G  EL+++I S
Sbjct: 122 DTNEWIYSA-AEFYALGLGDPYCISAATGSGTGELLDQIVS 161



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 32/183 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  N GKSSL NA   ++  IVTDI GTTRD +       G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNVGKSSLINAFIGEERNIVTDIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRK 236

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTK 328
           + + E      + R+   +EN+D+ +L+         +++N  + I    N   + +  K
Sbjct: 237 NKVTEDLEYYSVMRSIRAIENSDVCILMLDAERGIEAQDLNIFQLIQ-RNNKSLVVVVNK 295

Query: 329 SDLY----STYTEEYDHLI---------------SSFTGEGLEELINKIKSILSNKFKKL 369
            DL     +    EY++ I               S+ T + + +++   K +  N+ K++
Sbjct: 296 WDLVEEKNTVVMNEYEYAIRNRMAPFDDFPIIFASALTKQRIFKVLETAKEVYQNRKKRV 355

Query: 370 PFS 372
           P S
Sbjct: 356 PTS 358


>gi|297517161|ref|ZP_06935547.1| GTP-binding protein EngA [Escherichia coli OP50]
          Length = 202

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 14  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 74  DGVETRMAEQSLLAIEEADVVLFM 97


>gi|325187572|emb|CCA22109.1| ras family GTPase putative [Albugo laibachii Nc14]
 gi|325188870|emb|CCA23399.1| ras family GTPase putative [Albugo laibachii Nc14]
          Length = 535

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N +++ ++G +N GKS+LFN L K   AIV ++PGTTRD       + G   ++ DT G+
Sbjct: 49  NQFRLALVGRTNVGKSTLFNRLTKSRRAIVHNVPGTTRDRRFAPGRIAGLEFEVIDTGGL 108

Query: 278 RETDDIVEKEG-IKRTFLEVENADLILLL 305
            +      +EG + +T + V  ADLI  L
Sbjct: 109 EDAPSGSLEEGMLSQTKIAVHEADLIFFL 137



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           K  I+G  N GKS+L N + ++D  +    PG TRD + +      + +K+ DTAGI   
Sbjct: 243 KFAIVGRPNVGKSTLLNRIIREDRVLTGPEPGVTRDSIEVPWTFGEHEIKLIDTAGIRRH 302

Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
             R+  + +E   ++ +F  ++ A ++ ++ +++ KK
Sbjct: 303 SKRDHSNQIEDLSVRDSFDAIDKAQVVAIVTDLSEKK 339


>gi|196229979|ref|ZP_03128843.1| small GTP-binding protein [Chthoniobacter flavus Ellin428]
 gi|196226305|gb|EDY20811.1| small GTP-binding protein [Chthoniobacter flavus Ellin428]
          Length = 462

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 4/136 (2%)

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI-SQGKLGEIIRNGYKIVILGHSNAGK 232
           + L FSE   +    ++ +L  + +L+  + + I  +   G    +  KI I+G  N GK
Sbjct: 102 SQLGFSESIAISAEHNRGILPLVAWLERMLPAPIFDEAGPGSDPASPIKIAIVGRPNVGK 161

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGI 289
           SSL NA+   D  +V+ I GTTRD + I  +  G    + DTAGIR   + D+ VE   +
Sbjct: 162 SSLTNAILNDDRTLVSPISGTTRDAIDIPYERHGQHYVLIDTAGIRPRGKVDNSVEVFSV 221

Query: 290 KRTFLEVENADLILLL 305
            R+   +  AD+  L+
Sbjct: 222 MRSETSIRRADICCLV 237


>gi|122700887|emb|CAL88032.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQVSDLIL 90


>gi|317452837|emb|CBL87854.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMVK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|139439670|ref|ZP_01773083.1| Hypothetical protein COLAER_02111 [Collinsella aerofaciens ATCC
           25986]
 gi|133775011|gb|EBA38831.1| Hypothetical protein COLAER_02111 [Collinsella aerofaciens ATCC
           25986]
          Length = 444

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +   + I+G  NAGKSSLFN +   D +IV++I GTTRD +   ++  G   ++ DTAGI
Sbjct: 178 DALNVAIIGRPNAGKSSLFNRILGADRSIVSNIAGTTRDAIDTVVERNGKHYRMVDTAGI 237

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R+   +   +E   + R    ++ AD+ LL+
Sbjct: 238 RKKSTVYENIEYYSMVRGLRAIDRADVALLV 268



 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + ++G  N GKS+L N LA+   AIV +  G TRD      D  G    I DT GI   +
Sbjct: 5   VAVVGRPNVGKSTLVNRLAQTSDAIVHESRGVTRDRSYHTADWNGREFTIVDTGGIEPLK 64

Query: 280 TDDI 283
           +DD+
Sbjct: 65  SDDV 68


>gi|119513020|ref|ZP_01632078.1| Small GTP-binding protein domain [Nodularia spumigena CCY9414]
 gi|119462337|gb|EAW43316.1| Small GTP-binding protein domain [Nodularia spumigena CCY9414]
          Length = 454

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  K+ I+G  N GKSSL NA   ++ +IV+ I GTTRD +   +     + ++ DTAGI
Sbjct: 175 NEIKVAIIGRPNVGKSSLLNAFVGEERSIVSPISGTTRDAIDTVISRNDQVYRLIDTAGI 234

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R    I    E   I R F  +  AD++L++
Sbjct: 235 RRKKQIDYGTEFFSINRAFKAIRRADVVLMV 265



 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LA +  AIV D PG TRD   +          + DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYMPSYWRDRDFLVVDTGGLVFND 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|299771613|ref|YP_003733639.1| GTP-binding protein EngA [Acinetobacter sp. DR1]
 gi|298701701|gb|ADI92266.1| GTP-binding protein EngA [Acinetobacter sp. DR1]
          Length = 469

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N L  +D  +  D PGTTRD + I  + +G    + DTAG+R
Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVR 235

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305
              + ++++EK  I +T   +++A +++++
Sbjct: 236 RKGKVEEMIEKFSIVKTLQAIKDAHVVVVV 265



 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN + K   A+V D  G TRD
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39


>gi|293610300|ref|ZP_06692601.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827532|gb|EFF85896.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 469

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N L  +D  +  D PGTTRD + I  + EG    + DTAG+R
Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVR 235

Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299
              + D+++EK  I +T   +++A
Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDA 259



 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN + K   A+V D  G TRD
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39


>gi|317452849|emb|CBL87860.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V+  DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEFLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701555|emb|CAL88167.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKASQMSDLIL 90


>gi|122701431|emb|CAL88105.1| GTPase [Helicobacter pylori]
 gi|122701437|emb|CAL88108.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYI 92


>gi|122701723|emb|CAL88250.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|18075605|emb|CAD11198.1| GTP-binding protein [Helicobacter pylori]
          Length = 347

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 6/99 (6%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EII+ G    I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   D
Sbjct: 199 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVD 254

Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310
           TAGIR    I  +EK  ++RT   +E + + LL+ ++++
Sbjct: 255 TAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSA 293


>gi|312866411|ref|ZP_07726629.1| ribosome biogenesis GTPase Der [Streptococcus downei F0415]
 gi|311098105|gb|EFQ56331.1| ribosome biogenesis GTPase Der [Streptococcus downei F0415]
          Length = 436

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NAL  +D  I + + GTTRD +  D +D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINALLGEDRVIASPVAGTTRDAIDTDFVDEEGQEYTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  I R+   ++ +D++L++  IN+++ I                      
Sbjct: 236 SGKVYENTEKYSIMRSMRAIDRSDVVLMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            +YD  I+ F    G+G+  ++NK  +I
Sbjct: 272 RDYDKRIAGFAHEAGKGIVIVVNKWDTI 299



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSLIDTGGIDDVD 65


>gi|222616294|gb|EEE52426.1| hypothetical protein OsJ_34551 [Oryza sativa Japonica Group]
          Length = 563

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +   E G   K+ DTAGIR  
Sbjct: 273 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRR 332

Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307
             +       E   +KR F  +  +D++ L+ E
Sbjct: 333 AAVASAGSTTETLSVKRAFRAIRRSDVVALVVE 365


>gi|197122609|ref|YP_002134560.1| GTP-binding protein EngA [Anaeromyxobacter sp. K]
 gi|196172458|gb|ACG73431.1| small GTP-binding protein [Anaeromyxobacter sp. K]
          Length = 465

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN LA + VAIV D+PG TRD    D+  EG  V + DT G   E+
Sbjct: 8   VALVGRPNVGKSTLFNRLAGRRVAIVEDVPGVTRDRNYADVIWEGRAVSVVDTGGFEPES 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D +  +  ++  L V+ A  ++L+
Sbjct: 68  RDRLMSQVREQAQLAVDEASAVVLV 92



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKS+  NAL  ++  +V+D+PGTTRD +   +  +G    ++DTAGIR  
Sbjct: 197 RLAIVGRPNVGKSTFVNALLGEERFVVSDVPGTTRDAIDSLVAHKGRRFVVTDTAGIRRK 256

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VE   + R    ++ A+++  L
Sbjct: 257 RSIALKVESFSVVRAMKAMDQAEVVACL 284


>gi|122700911|emb|CAL88044.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQISDLIL 90


>gi|70732274|ref|YP_262030.1| GTP-binding protein EngA [Pseudomonas fluorescens Pf-5]
 gi|123653208|sp|Q4K6V3|DER_PSEF5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|68346573|gb|AAY94179.1| GTP-binding protein EngA [Pseudomonas fluorescens Pf-5]
          Length = 490

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNDEKYTLIDTAG 252

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R+   I   VEK  + +T   +++A++++ +
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 284



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRTYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD++L L
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFL 88


>gi|51892817|ref|YP_075508.1| GTP-binding protein [Symbiobacterium thermophilum IAM 14863]
 gi|81826113|sp|Q67NS9|DER_SYMTH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|51856506|dbj|BAD40664.1| GTP-binding protein [Symbiobacterium thermophilum IAM 14863]
          Length = 471

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS+LFN L +   AIV D PG TRD L  D +  G  + + DT GI+  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSRHAIVEDQPGVTRDRLYADTEWNGRTLTLVDTGGIQLDK 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN 309
             D +E    ++  L +  AD+I+ + ++ 
Sbjct: 65  EGDTIEAHVTRQAELAIREADVIIFVVDVT 94



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ ++G  N GKSSL NA+  ++  IV+D+PGTTRD + + ++       + DTAG+R  
Sbjct: 179 RVAVIGRPNVGKSSLVNAILGEERVIVSDVPGTTRDAIDVLVERGEDKFLLIDTAGMRRK 238

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
              ++ VE+  + R    VE A ++L++
Sbjct: 239 ARVEEAVERYSVMRALRAVERAQVVLIV 266


>gi|148546131|ref|YP_001266233.1| GTP-binding protein EngA [Pseudomonas putida F1]
 gi|166225843|sp|A5VYT9|DER_PSEP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|148510189|gb|ABQ77049.1| small GTP-binding protein [Pseudomonas putida F1]
          Length = 487

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  +V D PGTTRD + I  + +G      DTAG
Sbjct: 190 KDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDEPGTTRDSIYIPFERDGDKYTFIDTAG 249

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R+   I   VEK  + +T   +++A++++ +
Sbjct: 250 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 281



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L K   AIV D+ G TRD    D   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ + +E AD +L L
Sbjct: 65  VGMDEKMAEQSLMAIEEADYVLFL 88


>gi|242255838|gb|ACS88903.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|239500761|ref|ZP_04660071.1| GTP-binding protein EngA [Acinetobacter baumannii AB900]
          Length = 469

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N L  +D  +  D PGTTRD + I  + EG    + DTAG+R
Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVR 235

Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299
              + D+++EK  I +T   +++A
Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDA 259



 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN + K   A+V D  G TRD
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39


>gi|218186089|gb|EEC68516.1| hypothetical protein OsI_36791 [Oryza sativa Indica Group]
          Length = 676

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +   E G   K+ DTAGIR  
Sbjct: 386 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRR 445

Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307
             +       E   +KR F  +  +D++ L+ E
Sbjct: 446 AAVASAGSTTETLSVKRAFRAIRRSDVVALVVE 478



 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 25/38 (65%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ I+G  N GKS+LFN L   + AIV D PG TRD L
Sbjct: 163 RVAIIGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRL 200


>gi|167623303|ref|YP_001673597.1| GTP-binding protein EngA [Shewanella halifaxensis HAW-EB4]
 gi|189037161|sp|B0TLI8|DER_SHEHH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|167353325|gb|ABZ75938.1| small GTP-binding protein [Shewanella halifaxensis HAW-EB4]
          Length = 490

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAHLAGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E    +++   +E AD++L L +  +
Sbjct: 65  EGIETRMAEQSLAAIEEADVVLFLTDARA 93



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 201 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERQGREYVLIDTAGVRRR 260

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   VE+++++LL+  I++++ I+
Sbjct: 261 SKVHETVEKFSVIKTLKAVEDSNVVLLV--IDAREGIA 296


>gi|332970913|gb|EGK09889.1| ribosome-associated GTPase EngA [Psychrobacter sp. 1501(2011)]
          Length = 473

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + G K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I  +  G    + DTAG
Sbjct: 175 QGGLKLAIIGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSIYIPYERNGKNYVLIDTAG 234

Query: 277 IRET---DDIVEKEGIKRTFLEVENADLILLL 305
           +R     D+ VEK  + +T   ++++++++ +
Sbjct: 235 VRRRGRIDEKVEKFSVVKTLQAIKDSNVVVAV 266



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN + K   A+V D+ G TRD    D         + DT GI E D
Sbjct: 7   VALIGRPNVGKSTIFNQMTKTRQALVADLSGLTRDRQYGDATYNNKSFVVIDTGGIGEAD 66

Query: 282 D 282
           D
Sbjct: 67  D 67


>gi|320529134|ref|ZP_08030226.1| ribosome-associated GTPase EngA [Selenomonas artemidis F0399]
 gi|320138764|gb|EFW30654.1| ribosome-associated GTPase EngA [Selenomonas artemidis F0399]
          Length = 441

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + ++G  N GKS+LFN + KK V+IV D+PG TRD + +D +   +   I DT GI   E
Sbjct: 6   VAVVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYMDAEWLNHEFTIIDTGGIEFDE 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           +D I+ +    +  L +E AD+IL L
Sbjct: 66  SDHIL-RSMRSQAELAMEEADVILFL 90



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 5/96 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL N L  ++  IV+D+PGTTRD +      +G    + DTAG+R   
Sbjct: 179 IAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDTHFTRDGAKYLLIDTAGMRRKG 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
            I   VE+  + R+   ++ A ++L++  IN+ + I
Sbjct: 239 KITLPVERYSVMRSLRAIDRAGVVLMV--INAAEGI 272


>gi|292806522|gb|ADE42391.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQISDLIL 90


>gi|197104999|ref|YP_002130376.1| GTP-binding protein [Phenylobacterium zucineum HLK1]
 gi|196478419|gb|ACG77947.1| GTP-binding protein [Phenylobacterium zucineum HLK1]
          Length = 509

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 32/179 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N L  +D  +     G TRD + +D + EG  +++ DTAG+R  
Sbjct: 181 RIAIVGRPNAGKSTLVNRLIGEDRLLTGPEAGITRDAIPVDWEWEGRPIRLVDTAGLRRK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------FIFIGTKS 329
             +   +EK   + T   +  A+++LL+ +     EI   +  D         +F+ TK 
Sbjct: 241 AKVQEKLEKLSTQDTIRAITFAEVVLLVMDATHPFEIQDLQIADLCEREGRGLVFVLTKW 300

Query: 330 DLY-------STYTEEYDHL-----------ISSFTGEGLEELIN---KIKSILSNKFK 367
           DL        +  TEE   L           +S+ TG G++ L+    K+    S K K
Sbjct: 301 DLVEEPQAVLAEITEEAYRLLPQVKGSPIVALSAETGRGMDRLMPAVLKVHGDWSTKVK 359



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 14/116 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-----LTIDLDLEGYLVKISDTA 275
           K+ I+G  N GKS+LFN LA + +AIV D PG TRD         DLDLE     + DTA
Sbjct: 4   KLAIVGRPNVGKSTLFNRLAGRKLAIVDDRPGVTRDRRFGTGRLGDLDLE-----LIDTA 58

Query: 276 GIRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
           G  + TD+ +E     +T   V+  D+ L +  I+S++ ++ P +  F  I  K D
Sbjct: 59  GFEDVTDESLEARMRAQTERAVDECDVALFV--IDSREGVT-PADRIFAEILRKRD 111


>gi|122702655|emb|CAL88517.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|118588128|ref|ZP_01545538.1| GTP-binding protein EngA [Stappia aggregata IAM 12614]
 gi|118439750|gb|EAV46381.1| GTP-binding protein EngA [Stappia aggregata IAM 12614]
          Length = 473

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 18/159 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L      I DTAG+ 
Sbjct: 2   GATVAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGDARLGDLRFTIIDTAGLE 61

Query: 279 ETD-DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           + D + +E    ++T   +E AD +L + +  +          E++       I +  K+
Sbjct: 62  DADKESLEGRMRRQTEEAIETADAVLFVIDARAGVTPLDAHFAEVARKTTRPVILLANKA 121

Query: 330 D-------LYSTYTEEYDH--LISSFTGEGLEELINKIK 359
           +       LY +Y+        IS+  GEGL +L + +K
Sbjct: 122 EGRAGESGLYESYSLGLGDPIAISAEHGEGLADLYDALK 160



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N +  +D  +     G TRD +++D       +K+ DTAGIR+ 
Sbjct: 204 RVAIVGRPNAGKSTLINRMLGEDRMLTGPEAGITRDSISVDWVWRDRHIKLFDTAGIRKK 263

Query: 281 DDIVEK 286
             + EK
Sbjct: 264 ARVQEK 269


>gi|120610115|ref|YP_969793.1| GTP-binding protein EngA [Acidovorax citrulli AAC00-1]
 gi|166224298|sp|A1TM31|DER_ACIAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|120588579|gb|ABM32019.1| small GTP-binding protein [Acidovorax citrulli AAC00-1]
          Length = 447

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG+R  
Sbjct: 181 RLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQQFELIDTAGLRRK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +E+A+++LLL
Sbjct: 241 GKVFEAIEKFSVVKTLQAIESANVVLLL 268



 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD    +  L  +   + DT G   + 
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGKLGKHEYIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
              + +E  K+T   V  AD+++ +
Sbjct: 65  SSGIYREMAKQTQQAVAEADVVIFV 89


>gi|239815182|ref|YP_002944092.1| GTP-binding protein EngA [Variovorax paradoxus S110]
 gi|259645888|sp|C5CXH0|DER_VARPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|239801759|gb|ACS18826.1| small GTP-binding protein [Variovorax paradoxus S110]
          Length = 447

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG+R  
Sbjct: 182 KLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFERNGQRFELIDTAGLRRK 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +E+A ++LLL
Sbjct: 242 GKVFEAIEKFSVVKTLQAIESASVVLLL 269



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L +   AIV D  G TRD    +  L  +   + DT G   + 
Sbjct: 5   VALVGRPNVGKSTLFNRLTQTRDAIVADFAGLTRDRHYGNGRLGKHEFIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
              + KE  K+T   V  AD+++ +
Sbjct: 65  GSGIYKEMAKQTRQAVAEADVVIFV 89


>gi|213155967|ref|YP_002318012.1| small GTP-binding protein [Acinetobacter baumannii AB0057]
 gi|301346486|ref|ZP_07227227.1| GTP-binding protein EngA [Acinetobacter baumannii AB056]
 gi|301594209|ref|ZP_07239217.1| GTP-binding protein EngA [Acinetobacter baumannii AB059]
 gi|254783128|sp|B7I5H1|DER_ACIB5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|213055127|gb|ACJ40029.1| small GTP-binding protein [Acinetobacter baumannii AB0057]
          Length = 469

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N L  +D  +  D PGTTRD + I  + EG    + DTAG+R
Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVR 235

Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299
              + D+++EK  I +T   +++A
Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDA 259



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E++
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGESE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++    +++   +  AD+I+ +
Sbjct: 65  CGIDNYMAEQSKTAINEADIIIFV 88


>gi|169797239|ref|YP_001715032.1| GTP-binding protein EngA [Acinetobacter baumannii AYE]
 gi|184156836|ref|YP_001845175.1| GTP-binding protein EngA [Acinetobacter baumannii ACICU]
 gi|215484680|ref|YP_002326915.1| small GTP-binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|260556121|ref|ZP_05828340.1| ribosome-associated GTPase EngA [Acinetobacter baumannii ATCC
           19606]
 gi|301509976|ref|ZP_07235213.1| GTP-binding protein EngA [Acinetobacter baumannii AB058]
 gi|332851256|ref|ZP_08433329.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013150]
 gi|332866125|ref|ZP_08436840.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013113]
 gi|332873250|ref|ZP_08441207.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6014059]
 gi|254783127|sp|B7H065|DER_ACIB3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783129|sp|B2I3F0|DER_ACIBC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783131|sp|B0V4V6|DER_ACIBY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783285|sp|A3M215|DER_ACIBT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169150166|emb|CAM88060.1| putative GTP-binding protein EngA [Acinetobacter baumannii AYE]
 gi|183208430|gb|ACC55828.1| predicted GTPase [Acinetobacter baumannii ACICU]
 gi|193076314|gb|ABO10959.2| putative GTP-binding protein EngA [Acinetobacter baumannii ATCC
           17978]
 gi|213986103|gb|ACJ56402.1| small GTP-binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|260410176|gb|EEX03475.1| ribosome-associated GTPase EngA [Acinetobacter baumannii ATCC
           19606]
 gi|322506727|gb|ADX02181.1| engA [Acinetobacter baumannii 1656-2]
 gi|323516601|gb|ADX90982.1| GTP-binding protein EngA [Acinetobacter baumannii TCDC-AB0715]
 gi|332730136|gb|EGJ61463.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013150]
 gi|332734766|gb|EGJ65860.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013113]
 gi|332738762|gb|EGJ69632.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6014059]
          Length = 469

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N L  +D  +  D PGTTRD + I  + EG    + DTAG+R
Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVR 235

Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299
              + D+++EK  I +T   +++A
Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDA 259



 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN + K   A+V D  G TRD
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39


>gi|163749553|ref|ZP_02156800.1| GTP-binding protein EngA [Shewanella benthica KT99]
 gi|161330663|gb|EDQ01600.1| GTP-binding protein EngA [Shewanella benthica KT99]
          Length = 492

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRASLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E    +++   +E AD++L L +  +
Sbjct: 65  EGIEVHMAQQSLAAIEEADVVLFLTDARA 93



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I +  EG    + DTAG+R  
Sbjct: 201 KLAIIGKPNVGKSTLINRILGEERVVVYDSPGTTRDSIYIPMVREGREYVLIDTAGVRRR 260

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            + ++ VEK  + +T   VE+ +++LL+  I++++ I+
Sbjct: 261 SKVNETVEKFSVIKTLKAVEDCNVVLLI--IDAREGIT 296


>gi|122702653|emb|CAL88516.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIILNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|4467653|emb|CAB37778.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V+  DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVECLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|148259762|ref|YP_001233889.1| GTP-binding protein EngA [Acidiphilium cryptum JF-5]
 gi|146401443|gb|ABQ29970.1| tRNA modification GTPase trmE [Acidiphilium cryptum JF-5]
          Length = 451

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I G  N GKS+LFN LA K +A+V D PG TRD      +L G  V++ DTAG+ E 
Sbjct: 10  RVAICGRPNVGKSTLFNRLAGKRIALVADEPGVTRDRKEAWGELAGVKVQLIDTAGLEEA 69

Query: 281 -DDIVEKEGIKRTFLEVENADLILLL 305
             D +       T   V+ ADL+L +
Sbjct: 70  PPDTLPGRMRASTGTAVDEADLVLFV 95



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRET 280
           + I+G  NAGKS+L N L  +   I    PG TRD +  +L D  G   ++ DTAG+R  
Sbjct: 186 LAIVGRPNAGKSTLMNRLLGEQRVITGPEPGLTRDAIAAELTDSAGRRYRLFDTAGLRRR 245

Query: 281 DDI---VEKEGIKRTFLEVENADLILL 304
             +   +EK     T   ++ AD ++L
Sbjct: 246 ARVEAGLEKLSTSSTIEALKFADTVVL 272


>gi|292806476|gb|ADE42368.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|326316284|ref|YP_004233956.1| ribosome-associated GTPase EngA [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373120|gb|ADX45389.1| ribosome-associated GTPase EngA [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 447

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG+R  
Sbjct: 181 RLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQQFELIDTAGLRRK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +E+A+++LLL
Sbjct: 241 GKVFEAIEKFSVVKTLQAIESANVVLLL 268



 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD    +  L  +   + DT G   + 
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGKLGKHEYIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
              + +E  K+T   V  AD+++ +
Sbjct: 65  SSGIYREMAKQTQQAVAEADVVIFV 89


>gi|169634401|ref|YP_001708137.1| GTP-binding protein EngA [Acinetobacter baumannii SDF]
 gi|254783130|sp|B0VKR4|DER_ACIBS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169153193|emb|CAP02283.1| putative GTP-binding protein EngA [Acinetobacter baumannii]
          Length = 469

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N L  +D  +  D PGTTRD + I  + EG    + DTAG+R
Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVR 235

Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299
              + D+++EK  I +T   +++A
Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDA 259



 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN + K   A+V D  G TRD
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39


>gi|50313209|gb|AAT74552.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 333

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 6/109 (5%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           ++ + + K  EII+ G    I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + 
Sbjct: 189 NNALEENKEEEIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETIL 244

Query: 264 LEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310
           +    +   DTAGIR    I  +EK  ++RT   +E + + LL+ ++++
Sbjct: 245 IGDQKICFVDTAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSA 293


>gi|18075778|emb|CAD11317.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 347

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 6/99 (6%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EII+ G    I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   D
Sbjct: 199 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVD 254

Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310
           TAGIR    I  +EK  ++RT   +E + + LL+ ++++
Sbjct: 255 TAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSA 293


>gi|326403270|ref|YP_004283351.1| GTP-binding protein EngA [Acidiphilium multivorum AIU301]
 gi|325050131|dbj|BAJ80469.1| GTP-binding protein EngA [Acidiphilium multivorum AIU301]
          Length = 451

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I G  N GKS+LFN LA K +A+V D PG TRD      +L G  V++ DTAG+ E 
Sbjct: 10  RVAICGRPNVGKSTLFNRLAGKRIALVADEPGVTRDRKEAWGELAGVKVQLIDTAGLEEA 69

Query: 281 -DDIVEKEGIKRTFLEVENADLILLL 305
             D +       T   V+ ADL+L +
Sbjct: 70  PPDTLPGRMRASTGTAVDEADLVLFV 95



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRET 280
           + I+G  NAGKS+L N L  +   I    PG TRD +  +L D  G   ++ DTAG+R  
Sbjct: 186 LAIVGRPNAGKSTLMNRLLGEQRVITGPEPGLTRDAIAAELTDSAGRRYRLFDTAGLRRR 245

Query: 281 DDI---VEKEGIKRTFLEVENADLILL 304
             +   +EK     T   ++ AD ++L
Sbjct: 246 ARVEAGLEKLSTSSTIEALKFADTVVL 272


>gi|282848929|ref|ZP_06258319.1| ribosome-associated GTPase EngA [Veillonella parvula ATCC 17745]
 gi|282581434|gb|EFB86827.1| ribosome-associated GTPase EngA [Veillonella parvula ATCC 17745]
          Length = 444

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL NAL  +D  IV+D+ GTTRD +      E     + DTAG+R   
Sbjct: 181 VAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTYWTHENQKFVLIDTAGMRRKS 240

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            I   VE+  I R+   V+ AD+++L+
Sbjct: 241 KIEEAVERYSIVRSLRSVDRADIVVLV 267



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + ++G  N GKS+LFNA+  K ++IV DIPG TRD +  D +       + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           E   ++ K    +  L +E AD+IL +
Sbjct: 66  ENSHVIPKMMRLQAELAIEEADVILFV 92


>gi|254480079|ref|ZP_05093327.1| putative GTPase [marine gamma proteobacterium HTCC2148]
 gi|214039641|gb|EEB80300.1| putative GTPase [marine gamma proteobacterium HTCC2148]
          Length = 417

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  ++ ++G  N GKS+L N L  +D  +V D PGTTRD + ID   +     + DTAG+
Sbjct: 124 NSTRVAVVGRPNVGKSTLVNRLLGEDRVVVFDEPGTTRDSIYIDYQRDEQEYTLIDTAGV 183

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R   ++   VEK  I +T   +++A +++L+
Sbjct: 184 RRRKNVKQTVEKFSIVKTLKAIDDAHVVILV 214


>gi|17932845|emb|CAD11319.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 347

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 6/99 (6%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EII+ G    I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   D
Sbjct: 199 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVD 254

Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310
           TAGIR    I  +EK  ++RT   +E + + LL+ ++++
Sbjct: 255 TAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSA 293


>gi|258545523|ref|ZP_05705757.1| GTP-binding protein EngA [Cardiobacterium hominis ATCC 15826]
 gi|258519223|gb|EEV88082.1| GTP-binding protein EngA [Cardiobacterium hominis ATCC 15826]
          Length = 463

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + ++G  N GKS+L+NAL +   ++V+D PG TRD    D  L G   +I DT G +RE 
Sbjct: 18  VALVGRPNVGKSTLYNALTRSRDSLVSDTPGLTRDRNYGDATLAGMPCRIVDTGGLLREE 77

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +D +++   K+    VE AD+++ +
Sbjct: 78  EDQIDRRVDKQARAAVEEADIVVFV 102



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 4/91 (4%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGI 277
           G  + ++G  NAGKS+L N L  ++  + + + GTTRD + I   D +G    + DTAGI
Sbjct: 197 GIALAVIGRPNAGKSTLLNRLIGEERLVASPVAGTTRDAIAIPYEDAQGDRFTLIDTAGI 256

Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305
           R     +D +EK  I +T   +E A++++L+
Sbjct: 257 RRKARVNDKIEKFSIVKTLDAIERANVVILM 287


>gi|292806458|gb|ADE42359.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDSAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|50313211|gb|AAT74553.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 332

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 70  ALLSKEIKALNLKAAQMSDLIL 91



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 6/109 (5%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           ++ + + K  EII+ G    I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + 
Sbjct: 189 NNALEENKEEEIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETIL 244

Query: 264 LEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310
           +    +   DTAGIR    I  +EK  ++RT   +E + + LL+ ++++
Sbjct: 245 IGDQKICFVDTAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSA 293


>gi|296134487|ref|YP_003641734.1| small GTP-binding protein [Thermincola sp. JR]
 gi|296033065|gb|ADG83833.1| small GTP-binding protein [Thermincola potens JR]
          Length = 404

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 80/151 (52%), Gaps = 22/151 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I I G+ NAGKSSL NAL  +++A+V+D PGTT D +   ++L   G +V I DTAG+ +
Sbjct: 12  IAIFGNRNAGKSSLINALTGQNLAVVSDYPGTTTDPVYKSMELLPLGPVVLI-DTAGLDD 70

Query: 280 TDDIVE-KEGIKRTFLEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSD- 330
           T D+ E ++G  +T   +  ADL L+L +     +           K I  I + TK D 
Sbjct: 71  TGDLGELRKG--KTLEVLRKADLALVLVDAGCSNQSDEDLLHKIMEKKIPIIGVLTKIDK 128

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEEL 354
                  L+S     +   +SS TG+G+ EL
Sbjct: 129 FGVPEDNLFSRKGIPWTP-VSSKTGQGIHEL 158


>gi|294791776|ref|ZP_06756924.1| ribosome-associated GTPase EngA [Veillonella sp. 6_1_27]
 gi|294793637|ref|ZP_06758774.1| ribosome-associated GTPase EngA [Veillonella sp. 3_1_44]
 gi|294455207|gb|EFG23579.1| ribosome-associated GTPase EngA [Veillonella sp. 3_1_44]
 gi|294457006|gb|EFG25368.1| ribosome-associated GTPase EngA [Veillonella sp. 6_1_27]
          Length = 444

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL NAL  +D  IV+D+ GTTRD +      E     + DTAG+R   
Sbjct: 181 VAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTYWTHENQKFVLIDTAGMRRKS 240

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            I   VE+  I R+   V+ AD+++L+
Sbjct: 241 KIEEAVERYSIVRSLRSVDRADIVVLV 267



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFNA+  K ++IV DIPG TRD +  D +       + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65

Query: 282 D---IVEKEGIKRTFLEVENADLILLL 305
           D   ++ K    +  L +E AD+IL +
Sbjct: 66  DNSHVIPKMMRLQAELAIEEADVILFV 92


>gi|293400643|ref|ZP_06644788.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305669|gb|EFE46913.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 438

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  N GKSSL NAL  ++  IV++I GTTRD +      EG    + DTAGIR+ 
Sbjct: 178 RFCVIGRPNVGKSSLVNALLNQERVIVSNIEGTTRDAIDTPFKREGKEYVVIDTAGIRKR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + R    +E +D++L++
Sbjct: 238 GKVYENIEKYSVLRAMSAIERSDVVLVV 265



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  +  +IV D PG TRD +    +      ++ DT GI+  D
Sbjct: 8   VAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTKEFRVIDTGGIQLAD 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +E   +  + ++ AD IL +  +N K+ I+
Sbjct: 68  QPFREEINMQVEIAIDEADTILFV--VNGKEGIT 99


>gi|268594476|ref|ZP_06128643.1| GTP-binding protein engA [Neisseria gonorrhoeae 35/02]
 gi|268596471|ref|ZP_06130638.1| GTP-binding protein engA [Neisseria gonorrhoeae FA19]
 gi|291044231|ref|ZP_06569940.1| GTP-binding protein engA [Neisseria gonorrhoeae DGI2]
 gi|293399430|ref|ZP_06643583.1| ribosome-associated GTPase EngA [Neisseria gonorrhoeae F62]
 gi|268547865|gb|EEZ43283.1| GTP-binding protein engA [Neisseria gonorrhoeae 35/02]
 gi|268550259|gb|EEZ45278.1| GTP-binding protein engA [Neisseria gonorrhoeae FA19]
 gi|291011125|gb|EFE03121.1| GTP-binding protein engA [Neisseria gonorrhoeae DGI2]
 gi|291609999|gb|EFF39121.1| ribosome-associated GTPase EngA [Neisseria gonorrhoeae F62]
          Length = 502

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  +   I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 196 AVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 255

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 256 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 289



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 22  IALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGFEPVV 81

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 82  DSGILHEMAKQTLQAVDEADAVVFL 106


>gi|242255844|gb|ACS88906.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKVLNLKAAQMSDLIL 90


>gi|223041036|ref|ZP_03611294.1| ribosome-associated GTPase EngA [Campylobacter rectus RM3267]
 gi|222877708|gb|EEF12831.1| ribosome-associated GTPase EngA [Campylobacter rectus RM3267]
          Length = 467

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   ++ I+G  N GKSSL NAL K+  A+V+D+ GTT D +      E  + +  DTAG
Sbjct: 197 RKNIQVGIIGRVNVGKSSLLNALVKESRAVVSDVAGTTIDPVNETFVYEDRIFEFVDTAG 256

Query: 277 IRETDDI--VEKEGIKRTFLEVENADLILLL 305
           IR+   I  +E+  + RT   +E AD+ LL+
Sbjct: 257 IRKRGKIEGIERYALNRTESALELADIALLV 287



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI+++G  N GKSSLFN LA + +AI +D+ GTTRD     +++      + D+ G+ ++
Sbjct: 3   KIILVGKPNVGKSSLFNRLAGRRIAITSDVSGTTRDTNKTIIEIYDKSCVLIDSGGLDDS 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            ++  K    +T  E  ++D I+ +
Sbjct: 63  SELF-KNVKAKTLAEARSSDAIIFM 86


>gi|213418595|ref|ZP_03351661.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 320

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R  
Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  D VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|212634303|ref|YP_002310828.1| GTP-binding protein EngA [Shewanella piezotolerans WP3]
 gi|226741196|sp|B8CKR5|DER_SHEPW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|212555787|gb|ACJ28241.1| GTP-binding protein EngA [Shewanella piezotolerans WP3]
          Length = 490

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ EG    + DTAG+R  
Sbjct: 201 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMEREGREYVLIDTAGVRRR 260

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   VE+ +++LL+  I++++ I+
Sbjct: 261 SKVHETVEKFSVIKTLKAVEDCNVVLLI--IDAREGIA 296



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAHLAGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E    +++   +E AD++L + +  +
Sbjct: 65  EGIETRMAEQSLAAIEEADVVLFMTDARA 93


>gi|220935213|ref|YP_002514112.1| GTP-binding protein EngA [Thioalkalivibrio sp. HL-EbGR7]
 gi|254783176|sp|B8GTN1|DER_THISH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|219996523|gb|ACL73125.1| GTP-binding protein EngA [Thioalkalivibrio sp. HL-EbGR7]
          Length = 464

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 60/100 (60%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +I  +G  NAGKS+L N +  ++  + T+IPGTTRD + I  + +G    + DTAG+R
Sbjct: 177 GIRIAFVGRPNAGKSTLINRILGEERVVATEIPGTTRDSIFIPFERDGQQYTLIDTAGVR 236

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               +   +EK  + +T   ++ A +++++  +++++ IS
Sbjct: 237 RRSRVHEAIEKFSVVKTLQAIDAAHVVVMV--LDAREGIS 274



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD       + G+   + DT G+    
Sbjct: 5   IALVGRPNVGKSTLFNQLTRSRDALVADFPGLTRDRQYGPGRVGGFPYMVVDTGGLSGEA 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++    ++T   ++ +D++L L
Sbjct: 65  ETLDNLMARQTQQAIDESDVVLFL 88


>gi|122700637|emb|CAL87907.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE           +DLIL
Sbjct: 69  ALLSKEIKALNLKAARMSDLIL 90


>gi|319760649|ref|YP_004124587.1| GTP-binding protein engA [Candidatus Blochmannia vafer str. BVAF]
 gi|318039363|gb|ADV33913.1| GTP-binding protein engA [Candidatus Blochmannia vafer str. BVAF]
          Length = 478

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 5/97 (5%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  K+ ++G  N+GKS+  N + ++   I + IPGTTRD + I +        + DTAGI
Sbjct: 202 NSIKLAVVGRPNSGKSTFINYVVQESRVITSSIPGTTRDSVYIPIICYNQKYMLIDTAGI 261

Query: 278 RE-----TDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           R       D++ E+  + +TF  +++A +ILL+ +IN
Sbjct: 262 RRGNNKYIDNLPERISVLKTFQVIKDAHVILLIIDIN 298



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +V++G  N GKS+LFN L +   A+V D  G TRD     +  +     I DT G+ E+ 
Sbjct: 9   VVLVGQKNVGKSTLFNRLTQNYRALVADYFGVTRDRQYGYIQHKNDKCIIVDTGGVDESS 68

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT 327
           D   +  I  +T L +  AD++L +  +N +   ++  +ID+  IG 
Sbjct: 69  DSFLQNAINYQTNLAIREADIVLFV--VNGR---AYESSIDYNIIGN 110


>gi|229496957|ref|ZP_04390662.1| ribosome-associated GTPase EngA [Porphyromonas endodontalis ATCC
           35406]
 gi|229316059|gb|EEN81987.1| ribosome-associated GTPase EngA [Porphyromonas endodontalis ATCC
           35406]
          Length = 436

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 18/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L     AIVT+I GTTRD      +  G+   I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGSRQAIVTEISGTTRDRQYGHTNWTGHEFSIVDTGGWVSGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKN-IDFI 323
           +D+ E E  K+  + +E AD+IL + ++                 +KK I    N  D  
Sbjct: 65  EDVFESEINKQVQIAIEEADVILFVVDVMAGMTDLDREVAGLLRRAKKPILLVANKADTF 124

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
            IG +S  +        + IS+  G G  +L++ I + L  + ++
Sbjct: 125 EIGYQSAEFYALGLGDPYAISAINGSGTGDLLDAIVNSLPEQHER 169



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSSL NA   ++  IVT++ GTTRD +  + +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSLINAFIGEERNIVTNVAGTTRDSIYTEYNKFGFSFYLVDTAGIRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEI 308
             +   +E   + R+   +EN+D+ + + ++
Sbjct: 237 GKVQEDLEYYSVIRSIRAIENSDICIAMIDV 267


>gi|170725905|ref|YP_001759931.1| GTP-binding protein EngA [Shewanella woodyi ATCC 51908]
 gi|238688689|sp|B1KLB1|DER_SHEWM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169811252|gb|ACA85836.1| small GTP-binding protein [Shewanella woodyi ATCC 51908]
          Length = 488

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 86/182 (47%), Gaps = 31/182 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ ++G  N GKS+L N +  ++  +V D PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 201 KLAVIGKPNVGKSTLTNRILGEERVVVYDAPGTTRDSIYIPMERDGREYVLIDTAGVRRR 260

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFI---- 325
            + ++ VEK  + +T   VE+ +++LL+  +++++ I+        F  N     +    
Sbjct: 261 SKVNETVEKFSVIKTLKAVEDCNVVLLI--VDAREGIAEQDLGLLGFALNAGRALVIAVN 318

Query: 326 ---GTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              G   D+      E D           H IS+  G G+  L   ++    +  +++  
Sbjct: 319 KWDGIDQDIKDRVKSELDRRLGFIDFARIHFISALHGTGVGHLFESVQEAYESATRRVST 378

Query: 372 SI 373
           S+
Sbjct: 379 SM 380



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADYPGLTRDRKYGRAHLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E    +++   +E AD++L L +  +
Sbjct: 65  EGIETHMAEQSMAAIEEADVVLFLTDARA 93


>gi|292806514|gb|ADE42387.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            +  KE         + +DLIL
Sbjct: 69  ALWSKEIKALNLKAAQMSDLIL 90


>gi|292806424|gb|ADE42342.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMVK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|295689707|ref|YP_003593400.1| ribosome-associated GTPase EngA [Caulobacter segnis ATCC 21756]
 gi|295431610|gb|ADG10782.1| ribosome-associated GTPase EngA [Caulobacter segnis ATCC 21756]
          Length = 588

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           K+ I+G  N GKS+LFN LA K +AIV D PG TRD    D  L    +++ DTAG  + 
Sbjct: 4   KLAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYADGRLGDLDLQLIDTAGFEDV 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            D+ +E     +T L +E ADL L +
Sbjct: 64  ADESLEARMRAQTELAIEEADLSLFI 89



 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 37/66 (56%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N L  +   +     G TRD +++D       V++ DTAG+R+ 
Sbjct: 180 RLAIVGRPNAGKSTLINRLIGEQRLLTGPEAGITRDSISVDWVWGDKKVRLVDTAGLRKK 239

Query: 281 DDIVEK 286
             + EK
Sbjct: 240 AKVQEK 245


>gi|330752592|emb|CBL87538.1| GTP-binding protein [uncultured Flavobacteria bacterium]
          Length = 447

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 32/192 (16%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K+G+ + N     ++G  NAGKSS  NA+  K+  IVT I GTTRD +       G+   
Sbjct: 182 KIGDELPN---FAVVGRPNAGKSSFINAIIGKERNIVTKIAGTTRDSINSRYKRFGFDFN 238

Query: 271 ISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKN 319
           + DTAGIR+   I   +E   I R+   +E AD+ +L+         ++ +   ++   N
Sbjct: 239 LIDTAGIRKKTKIKEDIEFYSIMRSVRSIEYADVCILIVDATRGFDGQVQNIFWLTHRNN 298

Query: 320 IDFIFIGTKSDLY---STYTEEYD---------------HLISSFTGEGLEELINKIKSI 361
              + +  K DL+   S  T+EY+                 +SS T + + + ++    +
Sbjct: 299 KGIVILVNKWDLFEKSSNATKEYEIQIREAISPFKDVPIVFVSSLTKQRIYKAVSTAIEV 358

Query: 362 LSNKFKKLPFSI 373
             N+ +K+P  I
Sbjct: 359 FKNRKRKIPTKI 370



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 20/183 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L +I   G  + I+G  N GKS+ FN + +K  AIV    G TRD      D  G    +
Sbjct: 8   LQQINMMGGIVAIVGRPNVGKSTFFNRMVQKRDAIVDSQSGVTRDRHYGKSDWNGRGFTL 67

Query: 272 SDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEI 314
            DT G  E ++D+ +KE  K+  L VE AD I+ + ++                 S K I
Sbjct: 68  IDTGGYLENSEDVFQKEIDKQVSLAVEEADAIIFIVDVIDGVTGMDQNIAKLLRRSSKPI 127

Query: 315 SFPKN-IDFI-FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               N +D        S+ YS   + + + ISS +G G  EL++ + S + ++ KK+   
Sbjct: 128 YLAINKVDNTSRTQMTSEFYSLGYKNF-YCISSVSGSGTGELLDDLISQMPDEEKKIGDE 186

Query: 373 IPS 375
           +P+
Sbjct: 187 LPN 189


>gi|160882378|ref|ZP_02063381.1| hypothetical protein BACOVA_00327 [Bacteroides ovatus ATCC 8483]
 gi|237719052|ref|ZP_04549533.1| GTP-binding protein EngA [Bacteroides sp. 2_2_4]
 gi|260172013|ref|ZP_05758425.1| GTP-binding protein EngA [Bacteroides sp. D2]
 gi|299148136|ref|ZP_07041198.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_23]
 gi|315920326|ref|ZP_07916566.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156112191|gb|EDO13936.1| hypothetical protein BACOVA_00327 [Bacteroides ovatus ATCC 8483]
 gi|229451431|gb|EEO57222.1| GTP-binding protein EngA [Bacteroides sp. 2_2_4]
 gi|298512897|gb|EFI36784.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_23]
 gi|313694201|gb|EFS31036.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 437

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 22/168 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP-------KNIDFIFIGTKS 329
             +DD+ E+E  K+  L VE AD+IL + ++ N   ++           N   I +  K+
Sbjct: 62  VNSDDVFEEEIRKQVLLAVEEADVILFVVDVMNGVTDLDMQVAAILRRANSPVIMVANKT 121

Query: 330 ---DLYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKK 368
              DL     E Y       + +S+ TG G  +L++ I S     FKK
Sbjct: 122 DNHDLQYNAPEFYKLGLGDPYCVSAMTGSGTGDLMDLIVS----NFKK 165



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   ++  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +E +D+ +L+
Sbjct: 237 NKVNEDLEYYSVVRSIRSIEGSDVCILM 264


>gi|122702745|emb|CAL88562.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE           +DLIL
Sbjct: 69  ALLSKEIKALNLKAARMSDLIL 90


>gi|254493337|ref|ZP_05106508.1| GTP-binding protein engA [Neisseria gonorrhoeae 1291]
 gi|268598604|ref|ZP_06132771.1| GTP-binding protein engA [Neisseria gonorrhoeae MS11]
 gi|268600957|ref|ZP_06135124.1| GTP-binding protein engA [Neisseria gonorrhoeae PID18]
 gi|268603264|ref|ZP_06137431.1| GTP-binding protein engA [Neisseria gonorrhoeae PID1]
 gi|268681744|ref|ZP_06148606.1| GTP-binding protein engA [Neisseria gonorrhoeae PID332]
 gi|268683971|ref|ZP_06150833.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-92-679]
 gi|268686216|ref|ZP_06153078.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-93-1035]
 gi|226512377|gb|EEH61722.1| GTP-binding protein engA [Neisseria gonorrhoeae 1291]
 gi|268582735|gb|EEZ47411.1| GTP-binding protein engA [Neisseria gonorrhoeae MS11]
 gi|268585088|gb|EEZ49764.1| GTP-binding protein engA [Neisseria gonorrhoeae PID18]
 gi|268587395|gb|EEZ52071.1| GTP-binding protein engA [Neisseria gonorrhoeae PID1]
 gi|268622028|gb|EEZ54428.1| GTP-binding protein engA [Neisseria gonorrhoeae PID332]
 gi|268624255|gb|EEZ56655.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-92-679]
 gi|268626500|gb|EEZ58900.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-93-1035]
          Length = 500

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  +   I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 194 AVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 253

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 254 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 287



 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 20  IALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGFEPVV 79

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 80  DSGILHEMAKQTLQAVDEADAVVFL 104


>gi|149183701|ref|ZP_01862112.1| GTP-binding protein EngA [Bacillus sp. SG-1]
 gi|148848583|gb|EDL62822.1| GTP-binding protein EngA [Bacillus sp. SG-1]
          Length = 436

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NAL  +D  IV+++ GTTRD +   L ++G    I DTAG+R+ 
Sbjct: 177 KFSLIGRPNVGKSSLVNALLGEDRVIVSNVAGTTRDAIDSKLKVDGQEYVIIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E +D++L++
Sbjct: 237 GKVYESTEKYSVLRALRAIERSDVVLVV 264



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    D   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSADWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++  ++  + ++ AD+I+ L
Sbjct: 66  EPFLEQIRQQAEIAIDEADVIVFL 89


>gi|53802988|ref|YP_115285.1| GTPase family protein [Methylococcus capsulatus str. Bath]
 gi|81823578|sp|Q603B5|DER_METCA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|53756749|gb|AAU91040.1| GTPase family protein [Methylococcus capsulatus str. Bath]
          Length = 463

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 210 GKLGEI-IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           G+ GE     G +I ++G  N GKS+L N +  ++  +V D PGTTRD + I  +  G  
Sbjct: 166 GETGETEAEGGIRIAVVGRPNVGKSTLVNRILGEERVVVYDQPGTTRDSIYIPFERRGER 225

Query: 269 VKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
             + DTAGIR    +   VEK  + ++F  +E A +++ L
Sbjct: 226 YTLIDTAGIRRRARVNEGVEKFSVIKSFQAIEKAHVVIYL 265



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKS+LFN L +   A+V D PG TRD     +        + DT GI E  
Sbjct: 5   VALIGRTNVGKSTLFNYLTRTRDALVADFPGLTRDRQYGRVQRGERDYFVVDTGGIIEAA 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + ++ + +K+    ++ AD+IL L ++++
Sbjct: 65  EGIDDQAMKQVDHVLDEADVILFLVDVHA 93


>gi|332530165|ref|ZP_08406113.1| GTP-binding protein Der [Hylemonella gracilis ATCC 19624]
 gi|332040357|gb|EGI76735.1| GTP-binding protein Der [Hylemonella gracilis ATCC 19624]
          Length = 444

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  + G  N GKS+L N    ++  I  D+PGTTRD + +  + +G   ++ DTAG+R  
Sbjct: 180 RFAVAGRPNVGKSTLINTWLGEERLIAFDMPGTTRDAIRVPFERQGQKFELIDTAGLRRK 239

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VEK  + +T   +E+A+++LLL
Sbjct: 240 GRVFEAVEKFSVVKTLQAIESANVVLLL 267



 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   AIV D  G TRD    +         + DT G   T 
Sbjct: 5   LALVGRPNVGKSTLFNRLTQTRDAIVADYAGLTRDRHYGNGRQGRREFIVIDTGGFEPTA 64

Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305
           +  + KE   +T   V  AD ++ +
Sbjct: 65  ETGIYKEMANQTRQAVAEADAVIFV 89


>gi|297621840|ref|YP_003709977.1| GTP-binding protein EngA [Waddlia chondrophila WSU 86-1044]
 gi|297377141|gb|ADI38971.1| GTP-binding protein EngA [Waddlia chondrophila WSU 86-1044]
          Length = 454

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 9/124 (7%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           QNF   E+L  I+   + +SS I +    E +    K+ I+G  N GKS+L N L  ++ 
Sbjct: 150 QNFQIAELLESIV---SRLSSPIEKE---EELDTSIKVAIIGRPNVGKSTLTNYLLDEER 203

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADL 301
            +V+ IPGTTRD + + +  +  +    DTAGIR      + V+K    RT   +E  D+
Sbjct: 204 CLVSPIPGTTRDSVDVRVSHDDEIYTFIDTAGIRRKGAEHEAVDKFAAIRTQRAIERCDI 263

Query: 302 ILLL 305
            LL+
Sbjct: 264 CLLM 267



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  K+ I+G  N GKSSLFN + KK +AIV +  G TRD L  + D  G   ++ DT GI
Sbjct: 3   NKPKLAIVGRPNVGKSSLFNRICKKRMAIVDEAEGITRDRLYAEADCFGKEFEVIDTGGI 62

Query: 278 RETDDIVEKEGIKRTF-LEVENADLILL 304
                +   E I R   + +E AD ++L
Sbjct: 63  NPRSQVPFNEQIMRQAEIAIEEADGLIL 90


>gi|194098169|ref|YP_002001217.1| GTP-binding protein EngA [Neisseria gonorrhoeae NCCP11945]
 gi|239998620|ref|ZP_04718544.1| GTP-binding protein EngA [Neisseria gonorrhoeae 35/02]
 gi|240013743|ref|ZP_04720656.1| GTP-binding protein EngA [Neisseria gonorrhoeae DGI18]
 gi|240016181|ref|ZP_04722721.1| GTP-binding protein EngA [Neisseria gonorrhoeae FA6140]
 gi|240080325|ref|ZP_04724868.1| GTP-binding protein EngA [Neisseria gonorrhoeae FA19]
 gi|240112536|ref|ZP_04727026.1| GTP-binding protein EngA [Neisseria gonorrhoeae MS11]
 gi|240115276|ref|ZP_04729338.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID18]
 gi|240117563|ref|ZP_04731625.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID1]
 gi|240120813|ref|ZP_04733775.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID24-1]
 gi|240123118|ref|ZP_04736074.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID332]
 gi|240125369|ref|ZP_04738255.1| GTP-binding protein EngA [Neisseria gonorrhoeae SK-92-679]
 gi|240127821|ref|ZP_04740482.1| GTP-binding protein EngA [Neisseria gonorrhoeae SK-93-1035]
 gi|260440907|ref|ZP_05794723.1| GTP-binding protein EngA [Neisseria gonorrhoeae DGI2]
 gi|238690187|sp|B4RKD2|DER_NEIG2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|193933459|gb|ACF29283.1| essential Gc protein [Neisseria gonorrhoeae NCCP11945]
 gi|317163893|gb|ADV07434.1| GTP-binding protein EngA [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 485

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  +   I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|122702675|emb|CAL88527.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|110596891|ref|ZP_01385181.1| Small GTP-binding protein domain:GTP-binding [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341578|gb|EAT60038.1| Small GTP-binding protein domain:GTP-binding [Chlorobium
           ferrooxidans DSM 13031]
          Length = 437

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + ++  AIV   PG TRD    D + +G    + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRILRQRSAIVDSTPGVTRDRHIADGEWQGKQFLLMDTGGYNAES 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
           D++ K  +++T + + +AD+I+ + +
Sbjct: 65  DLISKAMLEQTLMAIRDADIIVFVTD 90



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSS  NAL   +  IV+ I GTTRD +      +     + DTAG+R+  
Sbjct: 180 LAIVGRPNVGKSSFVNALLNSNRHIVSSIAGTTRDAIDSRFTRKKQEFVLIDTAGLRKRT 239

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            I   +E     RT   +E  D+ L++
Sbjct: 240 KIDRGIEYYSSLRTEKALERCDVALVM 266


>gi|59800867|ref|YP_207579.1| GTP-binding protein EngA [Neisseria gonorrhoeae FA 1090]
 gi|8134430|sp|O87407|DER_NEIG1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|3722226|gb|AAC63508.1| essential Gc protein [Neisseria gonorrhoeae]
 gi|59717762|gb|AAW89167.1| putative GTP-binding protein [Neisseria gonorrhoeae FA 1090]
          Length = 485

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  +   I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|182418977|ref|ZP_02950233.1| GTP-binding protein EngA [Clostridium butyricum 5521]
 gi|237668464|ref|ZP_04528448.1| ribosome-associated GTPase EngA [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377260|gb|EDT74828.1| GTP-binding protein EngA [Clostridium butyricum 5521]
 gi|237656812|gb|EEP54368.1| ribosome-associated GTPase EngA [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 438

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN LA K ++IV D PG TRD +  + +   +   + DT GI  E 
Sbjct: 6   VAMVGRPNVGKSTLFNRLAGKRISIVQDTPGVTRDRVYAEAEWLTHTFTMIDTGGIEPER 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+ ++  ++  + +E AD+I+ +
Sbjct: 66  NDIIVQQMRRQANIAIETADVIVFI 90



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N L  +D  IV+++ GTTRD +  +L+ E     + DTAG+R  
Sbjct: 178 RIAMIGKPNVGKSSLINKLLGEDRVIVSEVAGTTRDAIDSELETEEGKFILIDTAGLRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E+  + RT+  +E +D+ +L+
Sbjct: 238 SKVKEEIERYSVVRTYAAIERSDVCILM 265


>gi|122700799|emb|CAL87988.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA+  +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARGRIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|85059734|ref|YP_455436.1| GTP-binding protein EngA [Sodalis glossinidius str. 'morsitans']
 gi|123519082|sp|Q2NS44|DER_SODGM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|84780254|dbj|BAE75031.1| putative GTP-binding protein [Sodalis glossinidius str.
           'morsitans']
          Length = 488

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      + EG+   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYCRAEWEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE     ++ + +E AD++L +
Sbjct: 65  EGVETRMAGQSLVAIEEADIVLFM 88



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+ 
Sbjct: 202 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 261

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 262 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 297


>gi|113954294|ref|YP_729814.1| GTP-binding protein EngA [Synechococcus sp. CC9311]
 gi|123031842|sp|Q0ICK8|DER_SYNS3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|113881645|gb|ABI46603.1| GTP-binding protein EngA [Synechococcus sp. CC9311]
          Length = 455

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N++  +  AIV+ I GTTRD +   ++ E    ++ DTAGIR  
Sbjct: 179 QLSIIGRPNVGKSSLLNSICGETRAIVSPIRGTTRDTIDTRIERENRRWRLIDTAGIRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  +E +D+ +L+
Sbjct: 239 RSVNYGPEFFGINRSFKAIERSDVCVLV 266



 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|329962635|ref|ZP_08300583.1| ribosome biogenesis GTPase Der [Bacteroides fluxus YIT 12057]
 gi|328529666|gb|EGF56564.1| ribosome biogenesis GTPase Der [Bacteroides fluxus YIT 12057]
          Length = 437

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 237 NKVSEDLEYYSVIRSIRSIENSDVCILM 264



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKSRQAIVNEEAGTTRDRQYGKTEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +DDI E+E  K+  + V+ AD+IL + ++
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDV 92


>gi|15640782|ref|NP_230412.1| GTP-binding protein EngA [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121585667|ref|ZP_01675462.1| GTP-binding protein [Vibrio cholerae 2740-80]
 gi|121726039|ref|ZP_01679338.1| GTP-binding protein [Vibrio cholerae V52]
 gi|147675115|ref|YP_001216248.1| GTP-binding protein EngA [Vibrio cholerae O395]
 gi|153817276|ref|ZP_01969943.1| GTP-binding protein [Vibrio cholerae NCTC 8457]
 gi|153821375|ref|ZP_01974042.1| GTP-binding protein [Vibrio cholerae B33]
 gi|227080942|ref|YP_002809493.1| GTP-binding protein [Vibrio cholerae M66-2]
 gi|229505623|ref|ZP_04395133.1| GTP-binding protein EngA [Vibrio cholerae BX 330286]
 gi|229510705|ref|ZP_04400184.1| GTP-binding protein EngA [Vibrio cholerae B33]
 gi|229517827|ref|ZP_04407271.1| GTP-binding protein EngA [Vibrio cholerae RC9]
 gi|229608641|ref|YP_002879289.1| GTP-binding protein EngA [Vibrio cholerae MJ-1236]
 gi|254847900|ref|ZP_05237250.1| GTP-binding protein EngA [Vibrio cholerae MO10]
 gi|255744569|ref|ZP_05418520.1| GTP-binding protein EngA [Vibrio cholera CIRS 101]
 gi|262161296|ref|ZP_06030407.1| GTP-binding protein EngA [Vibrio cholerae INDRE 91/1]
 gi|262168789|ref|ZP_06036484.1| GTP-binding protein EngA [Vibrio cholerae RC27]
 gi|298499104|ref|ZP_07008911.1| ribosome-associated GTPase EngA [Vibrio cholerae MAK 757]
 gi|26006742|sp|Q9KTW7|DER_VIBCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|172047436|sp|A5F3E6|DER_VIBC3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783177|sp|C3LT16|DER_VIBCM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|9655209|gb|AAF93928.1| GTP-binding protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121550030|gb|EAX60046.1| GTP-binding protein [Vibrio cholerae 2740-80]
 gi|121631521|gb|EAX63891.1| GTP-binding protein [Vibrio cholerae V52]
 gi|126512192|gb|EAZ74786.1| GTP-binding protein [Vibrio cholerae NCTC 8457]
 gi|126521085|gb|EAZ78308.1| GTP-binding protein [Vibrio cholerae B33]
 gi|146316998|gb|ABQ21537.1| GTP-binding protein [Vibrio cholerae O395]
 gi|227008830|gb|ACP05042.1| GTP-binding protein [Vibrio cholerae M66-2]
 gi|227012587|gb|ACP08797.1| GTP-binding protein [Vibrio cholerae O395]
 gi|229344542|gb|EEO09516.1| GTP-binding protein EngA [Vibrio cholerae RC9]
 gi|229350670|gb|EEO15611.1| GTP-binding protein EngA [Vibrio cholerae B33]
 gi|229357846|gb|EEO22763.1| GTP-binding protein EngA [Vibrio cholerae BX 330286]
 gi|229371296|gb|ACQ61719.1| GTP-binding protein EngA [Vibrio cholerae MJ-1236]
 gi|254843605|gb|EET22019.1| GTP-binding protein EngA [Vibrio cholerae MO10]
 gi|255737600|gb|EET92994.1| GTP-binding protein EngA [Vibrio cholera CIRS 101]
 gi|262022907|gb|EEY41613.1| GTP-binding protein EngA [Vibrio cholerae RC27]
 gi|262029046|gb|EEY47699.1| GTP-binding protein EngA [Vibrio cholerae INDRE 91/1]
 gi|297543437|gb|EFH79487.1| ribosome-associated GTPase EngA [Vibrio cholerae MAK 757]
          Length = 494

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   +E+A+++LL+  +++++ IS
Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFM 88


>gi|122702391|emb|CAL88386.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|331703406|ref|YP_004400093.1| GTP binding protein EngA [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801961|emb|CBW54115.1| GTP binding protein EngA, probably truncated inC terminal
           [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 435

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 8/121 (6%)

Query: 199 LKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           L + + S+IS+ +  EII++   KI I+G  N GKSSL N+L  ++  IV++I GTT D 
Sbjct: 155 LLDKVISYISKNE--EIIKDDSTKIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           + I          + DTAGIR+   +   +EK    R+   + +AD++LL+  I++ K I
Sbjct: 213 VDISFSYNKKKYTVIDTAGIRKKSKLGQTIEKYSYLRSLSAISDADIVLLM--IDATKPI 270

Query: 315 S 315
           +
Sbjct: 271 T 271



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN + K+  +IV D PG TRD +    +       + DT GI  +D
Sbjct: 6   VAIVGKPNVGKSSLFNRIIKEKKSIVDDKPGVTRDRIYSSAEWLTREFILIDTGGISLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            +   E   +T + +E AD+I+ +
Sbjct: 66  QLFSNEIKLQTQIAIEQADVIIFV 89


>gi|242255940|gb|ACS88954.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-- 67

Query: 282 DIVEKEGIKRTFLE-VENADLIL 303
           D++  + IK   L+  + +DLIL
Sbjct: 68  DVLLSKKIKALNLKAAQMSDLIL 90


>gi|218128437|ref|ZP_03457241.1| hypothetical protein BACEGG_00005 [Bacteroides eggerthii DSM 20697]
 gi|317475737|ref|ZP_07934996.1| ribosome-associated GTPase EngA [Bacteroides eggerthii 1_2_48FAA]
 gi|217989328|gb|EEC55641.1| hypothetical protein BACEGG_00005 [Bacteroides eggerthii DSM 20697]
 gi|316908120|gb|EFV29815.1| ribosome-associated GTPase EngA [Bacteroides eggerthii 1_2_48FAA]
          Length = 437

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 237 NKVNEDLEYYSVIRSIRSIENSDVCILM 264



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +DDI E+E  K+  + V+ AD+IL + ++
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDV 92


>gi|122702725|emb|CAL88552.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKVLNLKAAQMSDLIL 90


>gi|309809326|ref|ZP_07703195.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 2503V10-D]
 gi|308170439|gb|EFO72463.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 2503V10-D]
          Length = 435

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 89/185 (48%), Gaps = 29/185 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +  I+G  N GKSS+ N++  ++  IV D+ GTTRD +    + +G    I DTAGI
Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEIS------------FP 317
           R    +   VEK  + R+   +E +D+ +++ +     I   K I+              
Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292

Query: 318 KNIDFIFIGTKS--DLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368
              D  +  T S  D      +E+ +L       +S+ TG+ +E++++ +K++  N+ ++
Sbjct: 293 NKWDVPYKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352

Query: 369 LPFSI 373
           +  S+
Sbjct: 353 IQSSV 357



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D PG TRD +  +    G    + DT GI   D
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
           +++E++   +  + +  AD+I++L ++
Sbjct: 66  NVIEEQIKTQAEIAINEADVIVMLSDV 92


>gi|313897444|ref|ZP_07830987.1| ribosome biogenesis GTPase Der [Clostridium sp. HGF2]
 gi|312957814|gb|EFR39439.1| ribosome biogenesis GTPase Der [Clostridium sp. HGF2]
          Length = 436

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NA+  ++  IV++I GTTRD +      EG    + DTAGIR+ 
Sbjct: 176 KFCVIGRPNVGKSSLVNAILNQERVIVSNIEGTTRDAIDTPFKREGKEYVVIDTAGIRKR 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + R    +E +D++L++
Sbjct: 236 GKVYENIEKYSVLRAMSAIERSDVVLVV 263



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  +  +IV D PG TRD +    +      ++ DT GI+  +
Sbjct: 6   VAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTREFRVIDTGGIQLAN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + E   +  + ++ AD I+ +
Sbjct: 66  QDFQTEINMQVEIAIDEADCIVFV 89


>gi|292806690|gb|ADE42475.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ +E         + +DLIL
Sbjct: 69  ALLSQEIKALNLKAAQMSDLIL 90


>gi|242255910|gb|ACS88939.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKVLNLKAAQMSDLIL 90


>gi|329957356|ref|ZP_08297876.1| ribosome biogenesis GTPase Der [Bacteroides clarus YIT 12056]
 gi|328523069|gb|EGF50172.1| ribosome biogenesis GTPase Der [Bacteroides clarus YIT 12056]
          Length = 437

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 237 NKVSEDLEYYSVIRSIRSIENSDVCILM 264



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +DDI E+E  K+  + V+ AD+IL + ++
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDV 92


>gi|319637814|ref|ZP_07992580.1| GTP-binding protein engA [Neisseria mucosa C102]
 gi|317400969|gb|EFV81624.1| GTP-binding protein engA [Neisseria mucosa C102]
          Length = 485

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + +G    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFERDGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D +VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDKVVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|315656788|ref|ZP_07909675.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492743|gb|EFU82347.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 523

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 9/91 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N+L+    A+V+++PGTTRD +   L+L+G      DTAG+R  
Sbjct: 263 RVALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTTRDPVDEVLELDGQQWVFVDTAGVRRR 322

Query: 281 DDIVEKE------GIKRTFLEVENADLILLL 305
              V++        + RT   +ENAD+ L+L
Sbjct: 323 ---VKRSVGADYYSVLRTQAAIENADVALVL 350



 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N   + ++G  N GKS+L N +  +  A+V D PG TRD +T D    G    + DT 
Sbjct: 83  VPNWPTLAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVTYDAHWNGRNFHLVDTG 142

Query: 276 G 276
           G
Sbjct: 143 G 143


>gi|238926984|ref|ZP_04658744.1| GTP-binding protein EngA [Selenomonas flueggei ATCC 43531]
 gi|238885218|gb|EEQ48856.1| GTP-binding protein EngA [Selenomonas flueggei ATCC 43531]
          Length = 441

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + ++G  N GKS+LFN + KK V+IV D+PG TRD + +D +   +   I DT GI   E
Sbjct: 6   VAVVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYLDAEWLTHEFTIIDTGGIEFDE 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           +D I+ +    +  L +E AD+IL L
Sbjct: 66  SDHIL-RSMRSQAELAMEEADVILFL 90



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL N L  ++  IV+D+PGTTRD +      +G    + DTAG+R   
Sbjct: 179 IAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDTHFTKDGAKYLLIDTAGMRRKG 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            I   VE+  + R+   ++ A ++L++
Sbjct: 239 KITLPVERYSVMRSLRAIDRAGVVLMV 265


>gi|167765447|ref|ZP_02437560.1| hypothetical protein BACSTE_03837 [Bacteroides stercoris ATCC
           43183]
 gi|167697075|gb|EDS13654.1| hypothetical protein BACSTE_03837 [Bacteroides stercoris ATCC
           43183]
          Length = 437

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 237 NKVNEDLEYYSVIRSIRSIENSDVCILM 264



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +DDI E+E  K+  + V+ AD+IL + ++
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDV 92


>gi|122702249|emb|CAL88315.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             + KE         + +DLIL +
Sbjct: 69  AFLSKEIKAFNLKAAQMSDLILYV 92


>gi|89890093|ref|ZP_01201604.1| GTPase [Flavobacteria bacterium BBFL7]
 gi|89518366|gb|EAS21022.1| GTPase [Flavobacteria bacterium BBFL7]
          Length = 433

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  ++  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 175 RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDTKYNRFGFEFNLVDTAGIRRK 234

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E+AD+ +L+
Sbjct: 235 KKVKEDLEFYSVMRSVRAIEHADVCILI 262



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++  AI   + G TRD      D  G    + DT G +  +
Sbjct: 4   VAIVGRPNVGKSTLFNRLIQRREAITDAVSGVTRDRHYGKSDWNGKEFSVIDTGGYVVGS 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD+ E E   +  L ++ AD+I+ + +  S
Sbjct: 64  DDVFEAEIDHQVELAIDEADVIVFMVDAES 93


>gi|238021706|ref|ZP_04602132.1| hypothetical protein GCWU000324_01609 [Kingella oralis ATCC 51147]
 gi|237866320|gb|EEP67362.1| hypothetical protein GCWU000324_01609 [Kingella oralis ATCC 51147]
          Length = 489

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    +E A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAIEAANIAVLV--LDAQQDIA 272



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVVDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|169830379|ref|YP_001716361.1| small GTP-binding protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637223|gb|ACA58729.1| small GTP-binding protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 427

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 18/150 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           + I G  NAGKSSL NAL  + VAIV D+PGTT D +   ++L     V + DTAG+ +T
Sbjct: 12  LAIFGRRNAGKSSLINALTGQQVAIVADVPGTTTDPVAKAMELLPLGPVMLIDTAGLDDT 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDLY 332
            ++  +  ++++   ++ ADL+LL+ +        ++++      +++  I +  K+DLY
Sbjct: 72  GEL-GRLRVEKSLDVLQKADLVLLVVDPGQGFGACEQDVLAHVRARDLPVIAVINKADLY 130

Query: 333 S-TYTEEYDHL-------ISSFTGEGLEEL 354
                 E+  L       +S+ TG G++ L
Sbjct: 131 PEGAAGEWPELSSLPRIPVSARTGYGIDRL 160


>gi|153828302|ref|ZP_01980969.1| GTP-binding protein [Vibrio cholerae 623-39]
 gi|254285481|ref|ZP_04960445.1| GTP-binding protein [Vibrio cholerae AM-19226]
 gi|148876256|gb|EDL74391.1| GTP-binding protein [Vibrio cholerae 623-39]
 gi|150424343|gb|EDN16280.1| GTP-binding protein [Vibrio cholerae AM-19226]
          Length = 494

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   +E+A+++LL+  +++++ IS
Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFM 88


>gi|297581162|ref|ZP_06943086.1| GTP-binding protein [Vibrio cholerae RC385]
 gi|297534478|gb|EFH73315.1| GTP-binding protein [Vibrio cholerae RC385]
          Length = 494

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   +E+A+++LL+  +++++ IS
Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFM 88


>gi|258619961|ref|ZP_05715001.1| GTP-binding protein [Vibrio mimicus VM573]
 gi|258627193|ref|ZP_05721981.1| GTP-binding protein [Vibrio mimicus VM603]
 gi|262165075|ref|ZP_06032812.1| GTP-binding protein EngA [Vibrio mimicus VM223]
 gi|262172166|ref|ZP_06039844.1| GTP-binding protein EngA [Vibrio mimicus MB-451]
 gi|258580495|gb|EEW05456.1| GTP-binding protein [Vibrio mimicus VM603]
 gi|258587694|gb|EEW12403.1| GTP-binding protein [Vibrio mimicus VM573]
 gi|261893242|gb|EEY39228.1| GTP-binding protein EngA [Vibrio mimicus MB-451]
 gi|262024791|gb|EEY43459.1| GTP-binding protein EngA [Vibrio mimicus VM223]
          Length = 494

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   +E+A+++LL+  +++++ IS
Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFM 88


>gi|317452823|emb|CBL87847.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE           +DLIL
Sbjct: 69  ALLSKEIKALNLKAARMSDLIL 90


>gi|198274289|ref|ZP_03206821.1| hypothetical protein BACPLE_00431 [Bacteroides plebeius DSM 17135]
 gi|198272779|gb|EDY97048.1| hypothetical protein BACPLE_00431 [Bacteroides plebeius DSM 17135]
          Length = 441

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 181 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 241 NKVSEDLEYYSVIRSIRSIENSDVCILM 268



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 6   GNLVAIVGRPNVGKSTLFNRLTKSRQAIVNEQAGTTRDRQYGKSEWLGKEFSVVDTGGWV 65

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +DD+ E+E  K+  L ++ AD+IL + ++
Sbjct: 66  VNSDDVFEEEIRKQVMLAIDEADVILFVVDV 96


>gi|315655298|ref|ZP_07908198.1| ribosome-associated GTPase EngA [Mobiluncus curtisii ATCC 51333]
 gi|315490238|gb|EFU79863.1| ribosome-associated GTPase EngA [Mobiluncus curtisii ATCC 51333]
          Length = 523

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 9/91 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N+L+    A+V+++PGTTRD +   L+L+G      DTAG+R  
Sbjct: 263 RVALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTTRDPVDEVLELDGQQWVFVDTAGVRRR 322

Query: 281 DDIVEKE------GIKRTFLEVENADLILLL 305
              V++        + RT   +ENAD+ L+L
Sbjct: 323 ---VKRSVGADYYSVLRTQAAIENADVALVL 350



 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N   + ++G  N GKS+L N +  +  A+V D PG TRD +  D    G    + DT 
Sbjct: 83  VPNWPTLAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVMYDAHWNGRNFHLVDTG 142

Query: 276 G 276
           G
Sbjct: 143 G 143


>gi|291550925|emb|CBL27187.1| ribosome-associated GTPase EngA [Ruminococcus torques L2-14]
          Length = 442

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 6/121 (4%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           +S+  L D+L   + +++H  +    E   +  +I I+G  N GKSS+ N L  ++  IV
Sbjct: 149 ASRLGLGDML---DAVTAHFPEWDPSEADDDRPRIAIVGKPNVGKSSIINRLLGENRVIV 205

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILL 304
           ++I GTTRD +  ++  +G      DTAG+R  + I   +E+  I RT   VE AD++L+
Sbjct: 206 SNIAGTTRDAIDTEIVHDGKEYIFIDTAGLRRKNKIKEELERYSIIRTVSAVERADVVLM 265

Query: 305 L 305
           +
Sbjct: 266 V 266



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  D+D       + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADVDWLDRDFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+  +  ++  + ++ AD+I+ + ++
Sbjct: 66  SDIILSQMREQAQIAIDTADVIIFITDV 93


>gi|261212137|ref|ZP_05926423.1| GTP-binding protein EngA [Vibrio sp. RC341]
 gi|260838745|gb|EEX65396.1| GTP-binding protein EngA [Vibrio sp. RC341]
          Length = 494

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   +E+A+++LL+  +++++ IS
Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFM 88


>gi|292806674|gb|ADE42467.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ +E         + +DLIL
Sbjct: 69  ALLSQEIKALNLKAAQMSDLIL 90


>gi|262402852|ref|ZP_06079413.1| GTP-binding protein EngA [Vibrio sp. RC586]
 gi|262351634|gb|EEZ00767.1| GTP-binding protein EngA [Vibrio sp. RC586]
          Length = 494

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   +E+A+++LL+  +++++ IS
Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVVDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFM 88


>gi|237723395|ref|ZP_04553876.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229447917|gb|EEO53708.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 396

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I   G  N+GKSSL NAL  +D A+V+D PGTT D+++  ++++G       DT G  + 
Sbjct: 14  IAFFGRRNSGKSSLINALTGQDTALVSDTPGTTTDLVSKAMEIQGIGPCLFIDTPGFDDE 73

Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------KEINS---KKEISFPKNIDFIFIGTK 328
            ++ E   I RT   +E  D+ LLL         KE+ +   +K I     ++ I I   
Sbjct: 74  GELGELR-ISRTLKAIEKTDIALLLCGDTTFSYEKEMLALLKEKNIPVIPVLNKIDIREN 132

Query: 329 SDLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKF 366
           SD  +TY EE       LIS+    G+E++   I   L + F
Sbjct: 133 SDSLATYIEEECKIRPLLISAKEKTGIEQIRQAILEKLPSDF 174


>gi|149908865|ref|ZP_01897525.1| GTP-binding protein EngA [Moritella sp. PE36]
 gi|149808139|gb|EDM68080.1| GTP-binding protein EngA [Moritella sp. PE36]
          Length = 493

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 27/180 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKS+L N +  ++  +V D+PGTTRD + I ++  G    + DTAG+R  
Sbjct: 207 KLAMIGCPNVGKSTLVNRILGEERVVVYDMPGTTRDSIYIPMERAGRNYMLIDTAGVRRR 266

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKN-I 320
            +I   VEK  I +    +++A+++L++ +                INS + I    N  
Sbjct: 267 KNINEAVEKFSIVKALQAIDDANVVLMVLDARVGVTSQDLTLLGFAINSGRSIVIAINKW 326

Query: 321 DFIFIGTKSDLYSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           D +  G K  + S              H IS+  G G+  L   I     +  K++  S+
Sbjct: 327 DGLDAGVKDRIKSELDRRLGFIDFARIHFISALHGTGVGNLFESITEAFDSSTKRVSTSM 386



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD      +L G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANLAGREFIVVDTGGINGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++ +   ++ L +E AD +L +
Sbjct: 65  EGIDAKMADQSLLAIEEADAVLFM 88


>gi|153216257|ref|ZP_01950357.1| GTP-binding protein [Vibrio cholerae 1587]
 gi|124114402|gb|EAY33222.1| GTP-binding protein [Vibrio cholerae 1587]
          Length = 494

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   +E+A+++LL+  +++++ IS
Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFM 88


>gi|153800614|ref|ZP_01955200.1| GTP-binding protein [Vibrio cholerae MZO-3]
 gi|153824529|ref|ZP_01977196.1| GTP-binding protein [Vibrio cholerae MZO-2]
 gi|229513098|ref|ZP_04402564.1| GTP-binding protein EngA [Vibrio cholerae TMA 21]
 gi|229523415|ref|ZP_04412822.1| GTP-binding protein EngA [Vibrio cholerae TM 11079-80]
 gi|229525408|ref|ZP_04414813.1| GTP-binding protein EngA [Vibrio cholerae bv. albensis VL426]
 gi|229530107|ref|ZP_04419497.1| GTP-binding protein EngA [Vibrio cholerae 12129(1)]
 gi|254225026|ref|ZP_04918640.1| GTP-binding protein [Vibrio cholerae V51]
 gi|124123903|gb|EAY42646.1| GTP-binding protein [Vibrio cholerae MZO-3]
 gi|125622413|gb|EAZ50733.1| GTP-binding protein [Vibrio cholerae V51]
 gi|149741747|gb|EDM55776.1| GTP-binding protein [Vibrio cholerae MZO-2]
 gi|229333881|gb|EEN99367.1| GTP-binding protein EngA [Vibrio cholerae 12129(1)]
 gi|229338989|gb|EEO04006.1| GTP-binding protein EngA [Vibrio cholerae bv. albensis VL426]
 gi|229339778|gb|EEO04793.1| GTP-binding protein EngA [Vibrio cholerae TM 11079-80]
 gi|229349991|gb|EEO14945.1| GTP-binding protein EngA [Vibrio cholerae TMA 21]
 gi|327483547|gb|AEA77954.1| GTP-binding protein EngA [Vibrio cholerae LMA3894-4]
          Length = 494

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   +E+A+++LL+  +++++ IS
Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFM 88


>gi|282882100|ref|ZP_06290741.1| ribosome-associated GTPase EngA [Peptoniphilus lacrimalis 315-B]
 gi|281298130|gb|EFA90585.1| ribosome-associated GTPase EngA [Peptoniphilus lacrimalis 315-B]
          Length = 439

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSLFN L+K++ +IVT+I GTTRD +   +  +       DTAG+R+ 
Sbjct: 177 RVSIIGKPNVGKSSLFNYLSKEERSIVTNIAGTTRDAIDTKIIYKDNEYIFVDTAGLRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  + RT   +E + + LLL
Sbjct: 237 KKIKESIERYSVIRTLTAIERSSVCLLL 264



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 19/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  K ++I  D PG TRD +        Y   + DT G+   D
Sbjct: 6   VSIIGKPNVGKSTLFNKILGKKISITEDTPGVTRDRIYQTASWLDYSFLLVDTGGLDLKD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           + +    IK +  + VE + +I+ L +       + +EI+      N   I    K D  
Sbjct: 66  EDIFMSSIKAQVDIAVETSQVIIFLTDGIEGVSPTDREIANYLRKSNKKVILAVNKCDAK 125

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKI-KSI 361
            T    YD         +L+SS  G GL +L++++ KSI
Sbjct: 126 KTKENIYDFFELGLGEPYLVSSEQGTGLGDLLDEVTKSI 164


>gi|317452825|emb|CBL87848.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ +++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHELELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKATQMSDLIL 90


>gi|304389543|ref|ZP_07371506.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327353|gb|EFL94588.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 523

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 9/91 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N+L+    A+V+++PGTTRD +   L+L+G      DTAG+R  
Sbjct: 263 RVALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTTRDPVDEVLELDGQQWVFVDTAGVRRR 322

Query: 281 DDIVEKE------GIKRTFLEVENADLILLL 305
              V++        + RT   +ENAD+ L+L
Sbjct: 323 ---VKRSVGADYYSVLRTQAAIENADVALVL 350



 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N   + ++G  N GKS+L N +  +  A+V D PG TRD +T D    G    + DT 
Sbjct: 83  VPNWPTLAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVTYDAHWNGRNFHLVDTG 142

Query: 276 G 276
           G
Sbjct: 143 G 143


>gi|262192496|ref|ZP_06050647.1| GTP-binding protein EngA [Vibrio cholerae CT 5369-93]
 gi|262031655|gb|EEY50242.1| GTP-binding protein EngA [Vibrio cholerae CT 5369-93]
          Length = 494

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   +E+A+++LL+  +++++ IS
Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +  +++   ++ AD++L +
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFM 88


>gi|298346752|ref|YP_003719439.1| GTP-binding protein EngA [Mobiluncus curtisii ATCC 43063]
 gi|298236813|gb|ADI67945.1| GTP-binding protein EngA [Mobiluncus curtisii ATCC 43063]
          Length = 523

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 9/91 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N+L+    A+V+++PGTTRD +   L+L+G      DTAG+R  
Sbjct: 263 RVALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTTRDPVDEVLELDGQQWVFVDTAGVRRR 322

Query: 281 DDIVEKE------GIKRTFLEVENADLILLL 305
              V++        + RT   +ENAD+ L+L
Sbjct: 323 ---VKRSVGADYYSVLRTQAAIENADVALVL 350



 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N   + ++G  N GKS+L N +  +  A+V D PG TRD +T D    G    + DT 
Sbjct: 83  VPNWPTLAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVTYDAHWNGRNFHLVDTG 142

Query: 276 G 276
           G
Sbjct: 143 G 143


>gi|122700625|emb|CAL87901.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ +++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEMELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|160900447|ref|YP_001566029.1| GTP-binding protein EngA [Delftia acidovorans SPH-1]
 gi|238687162|sp|A9BMU9|DER_DELAS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|160366031|gb|ABX37644.1| small GTP-binding protein [Delftia acidovorans SPH-1]
          Length = 448

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           ++ +   ++ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ D
Sbjct: 176 DVAQKPIRLTVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERAGQKFELID 235

Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           TAG+R    +   +EK  + +T   +E+A+++LLL
Sbjct: 236 TAGLRRKGRVFEAIEKFSVVKTLQAIESANVVLLL 270



 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN L K   AIV D  G TRD
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRD 39


>gi|319900091|ref|YP_004159819.1| ribosome-associated GTPase EngA [Bacteroides helcogenes P 36-108]
 gi|319415122|gb|ADV42233.1| ribosome-associated GTPase EngA [Bacteroides helcogenes P 36-108]
          Length = 437

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 237 NKVNEDLEYYSVIRSIRSIENSDVCILM 264



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKTEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +DD+ E+E  K+  + ++ AD+IL + ++
Sbjct: 62  VNSDDVFEEEIRKQVLMALDEADVILFVVDV 92


>gi|167041117|gb|ABZ05877.1| putative GTPase of unknown function [uncultured marine
           microorganism HF4000_001A02]
          Length = 438

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 68/142 (47%), Gaps = 15/142 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKSSL NAL KK+ +IVT I GTTRD +   L   G  + + DTAG+R
Sbjct: 178 GMRLAIVGMPNVGKSSLTNALLKKEQSIVTPIAGTTRDSIDSVLKYYGNEITLVDTAGLR 237

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGT 327
              +  D +E     RT   +E  D+ L+L        K+  S  +    K    I +  
Sbjct: 238 KRSKVSDSIEFYSSLRTQRAIEYCDVALVLIDGEKGFSKQDKSILDYVIKKGKGLILLVN 297

Query: 328 KSDLYSTYTEEYDHLISSFTGE 349
           K DL    T    H +  FT E
Sbjct: 298 KWDLVDKDT----HTMKDFTDE 315



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           I I+G  N GKS+ FN + ++  AIV  + G TRD +  D+D  G+ +   DT G I E 
Sbjct: 6   IAIVGRPNVGKSTFFNRVLRQRKAIVDAMEGITRDRIYGDMDWVGHNLTFVDTGGYIPED 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            DI      ++    V  ADLILL+
Sbjct: 66  VDIFNSAIRQQAQAAVAEADLILLM 90


>gi|157374575|ref|YP_001473175.1| GTP-binding protein EngA [Shewanella sediminis HAW-EB3]
 gi|189037163|sp|A8FT74|DER_SHESH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157316949|gb|ABV36047.1| small GTP-binding protein [Shewanella sediminis HAW-EB3]
          Length = 488

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 31/182 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 201 KMAIIGKPNVGKSTLTNRILGEERVVVYDSPGTTRDSIYIPMERDGREYVMIDTAGVRRR 260

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFI---- 325
             +   VEK  + +T   VE+ +++LL+  I++++ I+        F  N     +    
Sbjct: 261 SKVHETVEKFSVIKTLKAVEDCNVVLLI--IDAREGIAEQDLGLLGFALNAGRALVIAVN 318

Query: 326 ---GTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              G   D+      E D           H IS+  G G+  L   ++    +  +++  
Sbjct: 319 KWDGIDQDIKDRVKSELDRRLGFIDFARIHFISALHGTGVGHLFESVQEAYDSATRRVST 378

Query: 372 SI 373
           S+
Sbjct: 379 SM 380



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E    +++   +E AD++L L +  +
Sbjct: 65  EGIETHMAEQSLAAIEEADVVLFLTDARA 93


>gi|149375007|ref|ZP_01892780.1| predicted GTPase [Marinobacter algicola DG893]
 gi|149360896|gb|EDM49347.1| predicted GTPase [Marinobacter algicola DG893]
          Length = 453

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +I I+G  N GKS+L N +  +D  IV D+PGTTRD + I  +       + DTAG+R
Sbjct: 155 GIRIGIVGRPNVGKSTLVNRMLGEDRVIVYDMPGTTRDSVYIPFERMDNQYTLIDTAGVR 214

Query: 279 E---TDDIVEKEGIKRTFLEVENADLILLL 305
                 ++VEK  I +T   +++A +++L+
Sbjct: 215 RRKNVSEVVEKFSIIKTLQAIDDAHVVILV 244


>gi|153809063|ref|ZP_01961731.1| hypothetical protein BACCAC_03371 [Bacteroides caccae ATCC 43185]
 gi|149128396|gb|EDM19615.1| hypothetical protein BACCAC_03371 [Bacteroides caccae ATCC 43185]
          Length = 437

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 22/168 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKSRRAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP-------KNIDFIFIGTKS 329
             +DDI E+E  K+  L V+ AD+IL + ++ N   ++           N   I +  K+
Sbjct: 62  VNSDDIFEEEIRKQVLLAVDEADVILFVVDVMNGVTDLDMQVATILRRANSPVIVVANKT 121

Query: 330 D---LYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKK 368
           D   L     E Y       + IS+ TG G  +L++    ++  KFKK
Sbjct: 122 DNNELQYNAPEFYKLGLGDPYCISAITGSGTGDLMD----LIVGKFKK 165



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +E +D+ +L+
Sbjct: 237 NKVNEDLEYYSVIRSIRAIEGSDVCILM 264


>gi|117620764|ref|YP_856299.1| GTP-binding protein EngA [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166224301|sp|A0KJ48|DER_AERHH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|117562171|gb|ABK39119.1| GTP-binding protein EngA [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 499

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K  I+G  N GKS+L N +  +D  IV D+PGTTRD + I ++ +     I DTAG+R  
Sbjct: 214 KFAIVGRPNVGKSTLTNRMLGEDRVIVYDMPGTTRDSVYIPMERDEQKYVIIDTAGVRRR 273

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  + VEK  + +T   +E+A++ LL+  I++++ I+
Sbjct: 274 GKVHETVEKFSVIKTLKAIEDANVCLLV--IDAQETIT 309



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L      + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGELEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E +  +++ L +E AD++L +
Sbjct: 65  EGIELKMAEQSLLAIEEADVVLFM 88


>gi|198283717|ref|YP_002220038.1| GTP-binding protein EngA [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667499|ref|YP_002426346.1| ribosome-associated GTPase EngA [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|226741127|sp|B7JC34|DER_ACIF2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238690897|sp|B5EJF7|DER_ACIF5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|198248238|gb|ACH83831.1| small GTP-binding protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519712|gb|ACK80298.1| ribosome-associated GTPase EngA [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 449

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 3/101 (2%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           S+    +  R G +I +LG  N GKS+L N +  +   +V D PGTTRD + I  + +G 
Sbjct: 166 SEDDTADAARKGPRIAMLGRPNVGKSTLVNTMLGEKRVLVFDEPGTTRDSIRIPYERQGK 225

Query: 268 LVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
              + DTAG+R    +   +EK  + +T   +  AD++LL+
Sbjct: 226 PYVMIDTAGMRRRARVGEGLEKLSVLKTLSALREADVVLLV 266



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 11/99 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+ FN L +   A+V D+PG TRD        EG    + DT G     
Sbjct: 5   IALVGRPNVGKSTFFNRLTRTREALVADLPGLTRDRHYGTAQFEGRQYLVVDTGGFEPE- 63

Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKEINSKKEIS 315
              E+EG+      +T L +  AD I  L  +++K+ +S
Sbjct: 64  ---EREGLVAAMAAQTRLAITEADAICFL--VDAKEGLS 97


>gi|104773911|ref|YP_618891.1| GTP-binding protein EngA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116513918|ref|YP_812824.1| GTP-binding protein EngA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|37999708|sp|Q8KH12|DER_LACDA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|122275312|sp|Q04AY6|DER_LACDB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|21633222|gb|AAM22484.1| conserved hypothetical GTP-binding protein [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103422992|emb|CAI97674.1| Putative GTP-binding protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093233|gb|ABJ58386.1| Predicted GTPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325125585|gb|ADY84915.1| Probable GTP-binding protein engA [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 435

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + VAIV D PG TRD         G+   I DT GI   D
Sbjct: 6   VAIVGQPNVGKSTLFNRIINERVAIVEDRPGVTRDRNYARASWMGHQFSIIDTGGITWED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
             +++E   +  + +E AD+I++L +
Sbjct: 66  STIDEEIRAQAEIAIEEADVIVMLAD 91



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 29/179 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSS+ N L  ++  IV +  GTTRD +      +G   ++ DTAGIR    +
Sbjct: 179 VIGRPNVGKSSIVNRLLGEERVIVANEEGTTRDAIDTPFVKDGTKFRVVDTAGIRRRGKV 238

Query: 284 VEKE---GIKRTFLEVENADL-ILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLY 332
            EK     + R    +E +D+ IL+L      +E        +    +  I    K DL 
Sbjct: 239 YEKTEKYSVMRAMSAMERSDVAILVLDASTGIREQDKHVAGYAHEAGLGMIIAVNKWDLP 298

Query: 333 -----------STYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                      +   EE+ +L       +S+ TG+ +++L   +K +  NK +++  S+
Sbjct: 299 KKDSSSGKDFEAVIREEFSYLDYAPIVFVSAKTGKNIDQLPKMVKEVYENKNQRIQSSV 357


>gi|160915095|ref|ZP_02077308.1| hypothetical protein EUBDOL_01103 [Eubacterium dolichum DSM 3991]
 gi|158432894|gb|EDP11183.1| hypothetical protein EUBDOL_01103 [Eubacterium dolichum DSM 3991]
          Length = 436

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  N GKSSL NA+  +D  IV++I GTTRD +      EG    + DTAGIR  
Sbjct: 176 RFCLIGRPNVGKSSLVNAILDQDRVIVSNIEGTTRDAIDTPFTREGKDYVVIDTAGIRRR 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + R    +E +D++L++
Sbjct: 236 GKVYENIEKYSVLRAMSAIERSDVVLVV 263



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  +  +IV D PG TRD +    +      ++ DT GI+  D
Sbjct: 6   VAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTKEFRLIDTGGIQLED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              ++E   +  + +E AD I+ +
Sbjct: 66  QDFQQEIQMQVEIAIEEADAIVFV 89


>gi|122701541|emb|CAL88160.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L+++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701517|emb|CAL88148.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L+++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122700773|emb|CAL87975.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L+++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701399|emb|CAL88089.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ +++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEMELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|213581531|ref|ZP_03363357.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 162

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFM 88


>gi|153872876|ref|ZP_02001641.1| Small GTP-binding protein domain [Beggiatoa sp. PS]
 gi|152070659|gb|EDN68360.1| Small GTP-binding protein domain [Beggiatoa sp. PS]
          Length = 515

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G K+ I+G  N GKS+L N +   +  I  D PGTTRD + I  + +G L  + DTAG+
Sbjct: 227 QGIKVAIIGRPNVGKSTLVNRMLGYERVITFDQPGTTRDSIFIPFERDGQLYTLIDTAGV 286

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R    +   +EK  + ++   +E  +++++L
Sbjct: 287 RRRARVSEKIEKFSVIKSLQAIETGNVVIML 317



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IVI+G  N GKS+LFNAL K   A+V D PG TRD       +      I DT G+   D
Sbjct: 5   IVIVGRPNVGKSTLFNALTKTRDALVADQPGLTRDRRIGRGCVGDSDYWIIDTGGLSTED 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS-----FPKNIDFIFI----GT 327
           D + +    +  L ++ AD +L L +         +EI+     F   I F+ I    G 
Sbjct: 65  DAILERISHQARLAIKEADGVLFLVDGRGGLTGGDQEITQYLRRFNTPI-FLVINKAEGL 123

Query: 328 KSDLYST--YTEEYD--HLISSFTGEGLEELINKIKSILSN 364
           + DL S   Y   ++  H IS+   +G+ +L++ +  I+S 
Sbjct: 124 QKDLVSAEFYQLGFENIHAISAVHRQGINDLMDAVLPIISQ 164


>gi|122702451|emb|CAL88416.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G  V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGREVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|253567260|ref|ZP_04844710.1| GTP-binding protein engA [Bacteroides sp. 3_2_5]
 gi|251944091|gb|EES84610.1| GTP-binding protein engA [Bacteroides sp. 3_2_5]
          Length = 437

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV D  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNDEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             +DDI E+E  K+  + V+ AD+IL + ++ +
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDVTN 94



 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   ++  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +E AD+ +L+
Sbjct: 237 NKVNEDLEYYSVVRSIRAIEGADVCILM 264


>gi|260061763|ref|YP_003194843.1| GTP-binding protein EngA [Robiginitalea biformata HTCC2501]
 gi|88785895|gb|EAR17064.1| GTP-binding protein EngA [Robiginitalea biformata HTCC2501]
          Length = 412

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  ++  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 154 RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGIRRK 213

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E++D+ L+L
Sbjct: 214 SKVKEDLEFYSVMRSVRAIEHSDVCLIL 241


>gi|317490873|ref|ZP_07949309.1| ribosome-associated GTPase EngA [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920420|gb|EFV41743.1| ribosome-associated GTPase EngA [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 495

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 209 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 268

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  D VEK  + +T   +E++++ LL+  I++++ IS
Sbjct: 269 GKVTDTVEKFSVIKTLQAIEDSNVALLV--IDAREGIS 304



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD      ++ G+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVSGHEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE    +++ + +E AD++L +
Sbjct: 65  NGVETHMAEQSLMAIEEADIVLFM 88


>gi|138895798|ref|YP_001126251.1| GTP-binding protein EngA [Geobacillus thermodenitrificans NG80-2]
 gi|196248680|ref|ZP_03147380.1| small GTP-binding protein [Geobacillus sp. G11MC16]
 gi|166198718|sp|A4IQA2|DER_GEOTN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|134267311|gb|ABO67506.1| GTP-binding protein-like protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211556|gb|EDY06315.1| small GTP-binding protein [Geobacillus sp. G11MC16]
          Length = 436

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L + ++ H  +    E   +  K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +
Sbjct: 155 LLDAVARHFPKDHGQEYEEDVIKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAV 214

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
                 EG    I DTAG+R+   I    EK  + R    +E +D++L++
Sbjct: 215 DTSFVREGQKYVIIDTAGMRKRGKIYESTEKYSVLRALRAIERSDVVLVV 264



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHSFYLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +  +  ++  + ++ AD+I+ +
Sbjct: 66  EPLLVQIRQQAEIAIDEADVIIFM 89


>gi|122702357|emb|CAL88369.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L+++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|294788428|ref|ZP_06753671.1| ribosome-associated GTPase EngA [Simonsiella muelleri ATCC 29453]
 gi|294483859|gb|EFG31543.1| ribosome-associated GTPase EngA [Simonsiella muelleri ATCC 29453]
          Length = 489

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRKRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    +E A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAIEAANVAVLV--LDAQQDIA 272



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L K   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTKTKDALVHDLPGLTRDRHYGHGRVGSKPYLVVDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVIFL 89


>gi|4467671|emb|CAB37787.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTR++    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRNINNRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYV 92


>gi|325855153|ref|ZP_08171776.1| ribosome biogenesis GTPase Der [Prevotella denticola CRIS 18C-A]
 gi|325483890|gb|EGC86834.1| ribosome biogenesis GTPase Der [Prevotella denticola CRIS 18C-A]
          Length = 437

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +       G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRK 236

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
           + + E      + R+   +EN+D+ +L+
Sbjct: 237 NKVTEDLEFYSVMRSIRSIENSDVCILM 264



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI E    K+  +  E ADL+L L
Sbjct: 65  DDIFEDAIRKQVLVATEEADLVLFL 89


>gi|154505327|ref|ZP_02042065.1| hypothetical protein RUMGNA_02842 [Ruminococcus gnavus ATCC 29149]
 gi|153794370|gb|EDN76790.1| hypothetical protein RUMGNA_02842 [Ruminococcus gnavus ATCC 29149]
          Length = 450

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 5/109 (4%)

Query: 201 NDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           +++ SH  +G  GE   +   KI I+G  N GKSS+ N L  ++  IV+DI GTTRD + 
Sbjct: 167 DEVVSHFPEGA-GETEEDERPKIAIVGKPNVGKSSIVNKLLGENRVIVSDIAGTTRDAID 225

Query: 260 IDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
             +  E       DTAG+R  + I   +E+  I RT   VE AD++L++
Sbjct: 226 TAIKHEDREYIFIDTAGLRRKNKIKEELERFSIIRTVTAVERADVVLMV 274



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  D+        + DT GI  ++
Sbjct: 14  VAIVGRPNVGKSTLFNTLAGERISIVKDTPGVTRDRIYADVSWLDKEFTMIDTGGIEPDS 73

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+  +  ++  + ++ AD+I+ + ++
Sbjct: 74  SDIILSQMREQAQIAIDTADVIVFITDV 101


>gi|122702161|emb|CAL88271.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L+++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|254423770|ref|ZP_05037488.1| GTPase, putative [Synechococcus sp. PCC 7335]
 gi|196191259|gb|EDX86223.1| GTPase, putative [Synechococcus sp. PCC 7335]
          Length = 449

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 11/95 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL------DLEGYLVKISD 273
           Y++ I+G  N GKSS+ NA   ++ +IV+ I GTTRD + + +      D + Y  ++ D
Sbjct: 160 YRVAIVGRPNVGKSSILNAFVGENRSIVSPISGTTRDAIDMVVTRGDGDDQKRY--RLID 217

Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           TAGIR+  ++    E  GI R F  ++ AD++LL+
Sbjct: 218 TAGIRKKKNVDFGPEYFGINRAFKAIKRADVVLLV 252


>gi|53715371|ref|YP_101363.1| GTP-binding protein EngA [Bacteroides fragilis YCH46]
 gi|60683339|ref|YP_213483.1| GTP-binding protein EngA [Bacteroides fragilis NCTC 9343]
 gi|255011702|ref|ZP_05283828.1| GTP-binding protein EngA [Bacteroides fragilis 3_1_12]
 gi|265767858|ref|ZP_06095390.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_16]
 gi|313149536|ref|ZP_07811729.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|81313609|sp|Q5L8K8|DER_BACFN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|81824906|sp|Q64NV3|DER_BACFR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|52218236|dbj|BAD50829.1| putative phosphoglycerate dehydrogenase [Bacteroides fragilis
           YCH46]
 gi|60494773|emb|CAH09579.1| putative GTP-binding protein [Bacteroides fragilis NCTC 9343]
 gi|263252530|gb|EEZ24058.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_16]
 gi|301164828|emb|CBW24388.1| putative GTP-binding protein [Bacteroides fragilis 638R]
 gi|313138303|gb|EFR55663.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 437

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV D  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNDEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             +DDI E+E  K+  + V+ AD+IL + ++ +
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDVTN 94



 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   ++  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +E AD+ +L+
Sbjct: 237 NKVNEDLEYYSVVRSIRAIEGADVCILM 264


>gi|327312576|ref|YP_004328013.1| ribosome biogenesis GTPase Der [Prevotella denticola F0289]
 gi|326944058|gb|AEA19943.1| ribosome biogenesis GTPase Der [Prevotella denticola F0289]
          Length = 437

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +       G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRK 236

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
           + + E      + R+   +EN+D+ +L+
Sbjct: 237 NKVTEDLEFYSVMRSIRSIENSDVCILM 264



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI E    K+  +  E ADL+L L
Sbjct: 65  DDIFEDAIRKQVLVATEEADLVLFL 89


>gi|260771392|ref|ZP_05880317.1| GTP-binding protein EngA [Vibrio furnissii CIP 102972]
 gi|260613518|gb|EEX38712.1| GTP-binding protein EngA [Vibrio furnissii CIP 102972]
 gi|315180972|gb|ADT87886.1| GTP-binding protein [Vibrio furnissii NCTC 11218]
          Length = 495

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 208 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRRR 267

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++ VEK  + +T   +E+A+++LL+  +++++ IS
Sbjct: 268 KRINETVEKFSVVKTLKAIEDANVVLLV--VDARENIS 303



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE +   ++   ++ AD++L +
Sbjct: 65  EGVETKMAAQSLAAIDEADVVLFM 88


>gi|304317178|ref|YP_003852323.1| ribosome-associated GTPase EngA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778680|gb|ADL69239.1| ribosome-associated GTPase EngA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 439

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI  +G  N GKSSL N +  ++ AIV+DIPGTTRD L    + +     I DTAG+R+ 
Sbjct: 178 KICFIGKPNVGKSSLVNKILGEERAIVSDIPGTTRDALDTYFEKDNKKYVIIDTAGMRKK 237

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305
              +D +E+  + R    ++ +D+ +L+
Sbjct: 238 GRIEDKIERYSVLRALSAIDRSDICILV 265



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 219 GYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            Y +V I+G  N GKS+LFN +  + ++IV D PG TRD +  + +  G    + DT G+
Sbjct: 2   AYPMVGIVGRPNVGKSTLFNKITGQRISIVEDKPGVTRDRIYYETEWLGRKFILVDTGGL 61

Query: 278 RETDDIVEKEGIKRTFLEVENA----DLILLL 305
            E D   E E   +  ++VE A    DLIL +
Sbjct: 62  -EPDS--EDEFFSKIRMQVEAALKTVDLILFV 90


>gi|226503143|ref|NP_001146320.1| hypothetical protein LOC100279896 [Zea mays]
 gi|219886617|gb|ACL53683.1| unknown [Zea mays]
          Length = 653

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +    +G   K+ DTAGIR  
Sbjct: 363 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTADGEKYKLIDTAGIRRR 422

Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307
             ++      E   +KR F  +  +D++ L+ E
Sbjct: 423 TAVISAGSTTESLSVKRAFRAIRRSDVVALVIE 455



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           K  +S HI    L        K+ I+G  N GKS+LFN L   + AIV D PG TRD L
Sbjct: 140 KTSVSKHIPDNLLP-------KVAIIGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRL 191


>gi|126668584|ref|ZP_01739538.1| GTP-binding protein EngA [Marinobacter sp. ELB17]
 gi|126626989|gb|EAZ97632.1| GTP-binding protein EngA [Marinobacter sp. ELB17]
          Length = 474

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +I I+G  N GKS+L N +  ++  +V D+PGTTRD + I  +  G    + DTAG+R
Sbjct: 176 GIRIGIVGRPNVGKSTLVNRMLGEERVVVYDLPGTTRDSIYIPYERLGQEYTLIDTAGVR 235

Query: 279 E---TDDIVEKEGIKRTFLEVENADLILLL 305
                 ++VEK  I +T   +++A +++L+
Sbjct: 236 RRKNVREVVEKFSIIKTLQAIDDAHVVILV 265



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + +   A+V D PG TRD    + + E     + DT G+   +
Sbjct: 5   IALVGRPNVGKSTLFNQMTRSRDALVADFPGLTRDRKYGEGNYENQRFIVIDTGGLMGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++    K++   VE AD++L +
Sbjct: 65  LGLDAAMAKQSLQAVEEADIVLFI 88


>gi|213027904|ref|ZP_03342351.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 153

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 16  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 75

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE    +++ L +E AD++L +
Sbjct: 76  DGVETRMAEQSLLAIEEADVVLFM 99


>gi|78484970|ref|YP_390895.1| small GTP-binding protein domain-containing protein [Thiomicrospira
           crunogena XCL-2]
 gi|78363256|gb|ABB41221.1| GTP-binding protein [Thiomicrospira crunogena XCL-2]
          Length = 480

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ ++G  N GKS+L N +  ++  +  D+PGTTRD + +  + +G L  + DTAG+R
Sbjct: 180 GIRVAVIGRPNVGKSTLINRMIGEERVVAFDMPGTTRDSIYVPFERQGELYTLIDTAGVR 239

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305
              +I   +EK  I +    +E++++++L+
Sbjct: 240 RRKNIKEKIEKFSIVKAIEAMESSNVVVLV 269



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN L +   AIV D PG TRD
Sbjct: 6   IALVGRPNVGKSTLFNRLTRSRDAIVADYPGLTRD 40


>gi|171463406|ref|YP_001797519.1| small GTP-binding protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|238689056|sp|B1XU78|DER_POLNS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|171192944|gb|ACB43905.1| small GTP-binding protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 454

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 31/179 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS+L N L  ++  I  D+PGTTRD + +  +  G    + DTAG+R  
Sbjct: 182 KIAVVGRPNVGKSTLINKLIGEERVIAFDMPGTTRDAIEVPFERNGKPYILVDTAGLRRR 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGT 327
             +   +EK  + +T   + + ++++L+  ++++++IS                 +    
Sbjct: 242 GKVFEAIEKFSVVKTLQAIADCNVVILM--LDAQQDISEQDAHIAGFIVEAGRALVVAVN 299

Query: 328 KSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
           K D   TY +E                  H IS+  G GL++L   + +  +    KLP
Sbjct: 300 KWDGIDTYVKERARLEIAQKLRFLDFANVHPISAKKGTGLKDLFKDVDAAYAAAMAKLP 358



 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I I+G SN GKS+LFN L +   A+V D  G TRD
Sbjct: 5   ITIVGRSNVGKSTLFNRLTRSRDALVADFSGLTRD 39


>gi|158522145|ref|YP_001530015.1| small GTP-binding protein [Desulfococcus oleovorans Hxd3]
 gi|226741135|sp|A8ZU05|DER_DESOH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|158510971|gb|ABW67938.1| small GTP-binding protein [Desulfococcus oleovorans Hxd3]
          Length = 458

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +VILG  N GKS+LFN L +   A+V D+PG TRD L  D++  G    + DT G    D
Sbjct: 5   VVILGRPNVGKSTLFNRLTRTQNALVDDMPGVTRDRLYGDVEWNGVFFSLVDTGGFLSGD 64

Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305
           D      I+ +    ++ AD +LL+
Sbjct: 65  DDFFMPHIQSQIHRAIDEADAVLLV 89



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKS+L N +  ++  IV+D+PGTTR+ +    +++G    + DTAG+R  
Sbjct: 177 KLAVVGRPNVGKSTLINRILGQERMIVSDVPGTTRESVDTVCEIDGRSYLLIDTAGLRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK    +T   ++  D+ L+L
Sbjct: 237 SRVSVKLEKFSAIKTLKSLDRCDIALIL 264


>gi|254445513|ref|ZP_05058989.1| GTPase, putative [Verrucomicrobiae bacterium DG1235]
 gi|198259821|gb|EDY84129.1| GTPase, putative [Verrucomicrobiae bacterium DG1235]
          Length = 468

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 3/58 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + + I+G  N GKS LFN LA K ++IV D+PG TRD++T DLD +GY   + DT G+
Sbjct: 3   FTVAIVGRPNVGKSRLFNRLAGKRISIVHDMPGVTRDIITRDLD-DGYT--LMDTGGM 57



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 8/93 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-----EGYLVKISDTA 275
           K+  +G  N GKSSL N L + +  IV+D+PGTTRD + +         E +   ++DTA
Sbjct: 184 KVCFIGRPNVGKSSLSNCLVQSERFIVSDVPGTTRDSIEMPFVWKSKRGEDWHFMLTDTA 243

Query: 276 GIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           GIR+   +   VE     R+   + + D++ ++
Sbjct: 244 GIRKQTKLNSSVEYFSRVRSLDAIRDVDVVFMV 276


>gi|224025980|ref|ZP_03644346.1| hypothetical protein BACCOPRO_02731 [Bacteroides coprophilus DSM
           18228]
 gi|224019216|gb|EEF77214.1| hypothetical protein BACCOPRO_02731 [Bacteroides coprophilus DSM
           18228]
          Length = 437

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWLGKEFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +DD+ E+E  K+  L VE AD+IL + ++
Sbjct: 62  VNSDDVFEEEIRKQVLLAVEEADVILFVVDV 92



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   ++  IVTDI GTTRD +    D  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEERNIVTDIAGTTRDSIYTRYDKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +E +D+ +L+
Sbjct: 237 NKVSEDLEYYSVIRSIRAIEGSDVCILM 264


>gi|122702171|emb|CAL88276.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L+++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|261856783|ref|YP_003264066.1| ribosome-associated GTPase EngA [Halothiobacillus neapolitanus c2]
 gi|261837252|gb|ACX97019.1| ribosome-associated GTPase EngA [Halothiobacillus neapolitanus c2]
          Length = 567

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ ++G  N GKS+L N L  +D  +  D PGTTRD + I  +  G    + DTAG+R  
Sbjct: 181 RVALIGRPNVGKSTLTNRLLGEDRVLAFDQPGTTRDSIYIPFEQNGKAYTLIDTAGVRRR 240

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
              ++++EK  I +T   +E A++++L+
Sbjct: 241 ARVNEMIEKFSIVKTLQAIEAANVVILV 268



 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + +   A+V D  G TRD      + EG    + DT G+    
Sbjct: 5   IALVGRPNVGKSTLFNQMTRSRAALVADYAGLTRDRQYGSAEHEGRDFIVIDTGGLTGER 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +E     + +  +E AD ++ +
Sbjct: 65  GGIEALMQDQAWAAIEEADCVVFM 88


>gi|121997392|ref|YP_001002179.1| GTP-binding protein EngA [Halorhodospira halophila SL1]
 gi|166198720|sp|A1WUL5|DER_HALHL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|121588797|gb|ABM61377.1| small GTP-binding protein [Halorhodospira halophila SL1]
          Length = 472

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G  + ++G  N GKS+L N L  ++  +V D PGTTRD + +  + +G    + DTAG+
Sbjct: 176 GGIPVAMIGRPNVGKSTLVNRLLGEERVVVYDEPGTTRDSIAVPFERDGQHYTLIDTAGV 235

Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLLKE 307
           R      + VEK  + +T   +E A +++L+ +
Sbjct: 236 RRRARVQETVEKFSVVKTLEAIERASVVMLVTD 268



 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           I ++G  N GKS+LFN L     A+V D PG TRD     +  +G    + DT G+ E
Sbjct: 5   IALVGRPNVGKSTLFNRLTGSRDALVADHPGLTRDRQYGIVRHQGGHAVVVDTGGMGE 62


>gi|332830164|gb|EGK02792.1| GTP-binding protein engA [Dysgonomonas gadei ATCC BAA-286]
          Length = 437

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 11/92 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD---LEGYLVKISDTAGI 277
           +I I+G  NAGKSS  NAL  ++  IVT+I GTTRD +    D   ++ YLV   DTAGI
Sbjct: 177 RIAIVGRPNAGKSSFVNALMDEERNIVTNIAGTTRDSIYTRFDRFNMDFYLV---DTAGI 233

Query: 278 RE----TDDIVEKEGIKRTFLEVENADLILLL 305
           R+    T+D+ E   + R+   +EN+D+ +L+
Sbjct: 234 RKKGKVTEDL-EYYSVIRSIKAIENSDVCVLM 264



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L +   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTESRQAIVDETSGTTRDRQYGKTEWGGQEFSLVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +DD+ E E  K+  + +E AD+IL L ++
Sbjct: 62  VNSDDVFESEINKQVSIAIEEADVILFLVDV 92


>gi|283955809|ref|ZP_06373300.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792764|gb|EFC31542.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 460

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD    ++ +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTEIHIHSKKAMLIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305
           ++   + +K+  L+V + +D+IL L
Sbjct: 64  ELF--KNVKKNTLKVAKESDIILYL 86



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 27/157 (17%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211
           L  LY +W+ K  H   F+  D    EEE++++F                  H  +GK  
Sbjct: 149 LDELY-EWLGKFLH-EEFLIPD----EEENLEDFLE----------------HYEEGKEF 186

Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E+ +N  ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++
Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIE 246

Query: 271 ISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLL 305
             DTAGIR+   I  +E+  + RT   + ++ + LL+
Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALLV 283


>gi|258611783|ref|ZP_05711645.1| GTP-binding protein engA [Listeria monocytogenes FSL R2-503]
 gi|258606169|gb|EEW18777.1| GTP-binding protein engA [Listeria monocytogenes FSL R2-503]
          Length = 345

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 5/115 (4%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + +H  + +  E   +  K  ++G  N GKSS+ NAL  +D  IV+DI GTTRD +    
Sbjct: 159 VRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTY 218

Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             +G    + DTAG+R+   +    EK  + R    +E +D++L++  IN+++ I
Sbjct: 219 TFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVV--INAEEGI 271



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++   +  + ++ AD+I+ +
Sbjct: 66  EPFLEQIRAQAEIAIDEADVIIFI 89


>gi|227356207|ref|ZP_03840596.1| GTP-binding protein [Proteus mirabilis ATCC 29906]
 gi|227163671|gb|EEI48587.1| GTP-binding protein [Proteus mirabilis ATCC 29906]
          Length = 501

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 215 KLAIVGRPNVGKSTLTNRMLGEERVVVYDMPGTTRDSIYIPMERDGKEYILIDTAGVRKR 274

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+ ++ LL+  I++++ IS
Sbjct: 275 GKVKETVEKFSVIKTLQAIEDCNVALLV--IDAREGIS 310



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD      +L+G    I DT GI   +
Sbjct: 10  IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELDGEEFIIIDTGGIDGAE 69

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE     ++   ++ AD++L L
Sbjct: 70  EGVETHMASQSLQAIQEADIVLFL 93


>gi|122701591|emb|CAL88185.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + ++LIL
Sbjct: 69  ALLSKEIKALNLKAAQMSNLIL 90


>gi|237737857|ref|ZP_04568338.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419737|gb|EEO34784.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817]
          Length = 440

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           K+ I+G  NAGKSSL N LA ++  IV+DI GTTRD +   ++ D + Y+  I DTAGIR
Sbjct: 178 KLAIIGKPNAGKSSLVNRLAGEERTIVSDIAGTTRDAIDTIVEFDEKKYM--IIDTAGIR 235

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305
               +   +E   + R    ++ AD+ LL+
Sbjct: 236 RKSKVEESLEYYSVLRAIKTIKRADVCLLM 265



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 17/139 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    VAIV D+PG TRD L  + +  G    + DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDRVAIVDDMPGVTRDRLYRETEWNGTEFVVVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE----INS-KKEISF---PKNIDFI--------F 324
           +D +  +  ++  + +  AD+IL + +    +N   +EI++    KN   I        F
Sbjct: 65  NDFMMTKIKQQAEVAMNEADVILFVVDGKCGVNPLDEEIAYILRKKNKPIILCVNKIDNF 124

Query: 325 IGTKSDLYSTYTEEYDHLI 343
           +  + D+Y  +   ++HLI
Sbjct: 125 LEQQDDVYDFWALGFEHLI 143


>gi|49473957|ref|YP_031999.1| GTP-binding protein EngA [Bartonella quintana str. Toulouse]
 gi|81696063|sp|Q6G0H5|DER_BARQU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|49239460|emb|CAF25811.1| GTP-binding protein [Bartonella quintana str. Toulouse]
          Length = 477

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 24/158 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           I ++G  N GKS+LFN L  + +A+V D PG TRD      +L+     + DTAG+ E  
Sbjct: 5   IAVVGRPNVGKSTLFNRLVGQKLALVCDKPGVTRDRRIHAAELQDLCFDVIDTAGLEEAG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKS 329
           D  +E      T   +  ADLIL +   ++K  I+ P +++F           + +  KS
Sbjct: 65  DHTLEGRMCSHTKAAINEADLILFM--FDAKSGIT-PSDLNFASLVRKSGKPIVLVANKS 121

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
           +  +    EY+           IS+  G GL +L + I
Sbjct: 122 ESKAAVGVEYEAWSLGLGEPCPISAEHGLGLSDLRDAI 159



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           +G + +  +   +I + G  N GKS+L N +  +D  +     G TRD +++D +  G  
Sbjct: 195 KGSVCDESKQPLRIAVAGRPNTGKSTLINRMLGQDRLLTGPEAGLTRDSISVDWEWRGRH 254

Query: 269 VKISDTAGIRETDDIVEK 286
           +K+ DTAG+R    I EK
Sbjct: 255 IKLFDTAGLRRKSKIQEK 272


>gi|313896288|ref|ZP_07829841.1| ribosome biogenesis GTPase Der [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975087|gb|EFR40549.1| ribosome biogenesis GTPase Der [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 441

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + ++G  N GKS+LFN + KK ++IV D+PG TRD + +D +   +   I DT GI   E
Sbjct: 6   VAVVGRPNVGKSTLFNQIGKKRISIVDDMPGVTRDRIYMDAEWLNHEFTIIDTGGIEFDE 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           +D I+ +    +  L +E AD+IL L
Sbjct: 66  SDHIL-RSMRSQAELAMEEADVILFL 90



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 5/96 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL N L  ++  IV+D+PGTTRD +      +G    + DTAG+R   
Sbjct: 179 IAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDTHFTRDGAKYLLIDTAGMRRKG 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
            I   VE+  + R+   ++ A ++L++  IN+ + I
Sbjct: 239 KITLPVERYSVMRSLRAIDRAGVVLMV--INAAEGI 272


>gi|254786612|ref|YP_003074041.1| GTP-binding protein EngA [Teredinibacter turnerae T7901]
 gi|259645886|sp|C5BLV6|DER_TERTT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|237684664|gb|ACR11928.1| GTP-binding protein EngA [Teredinibacter turnerae T7901]
          Length = 464

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + ID + +     + DTAG+R  
Sbjct: 178 KMAIIGRPNVGKSTLVNRMLGEERVVVFDMPGTTRDSIYIDYERDEKHYTLIDTAGVRRR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
            ++   VEK  I +T   + +A++++L+
Sbjct: 238 KNVKLTVEKFSIIKTLQAINDANVVILV 265



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   AIV +  G TRD    D + EG    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKTRDAIVANFAGLTRDRKYGDAEFEGKRFIVVDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++    +++   +  +D+IL L
Sbjct: 65  EGIDSVMAEQSLQAIAESDIILFL 88


>gi|197285696|ref|YP_002151568.1| GTP-binding protein EngA [Proteus mirabilis HI4320]
 gi|238693198|sp|B4EZS9|DER_PROMH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|194683183|emb|CAR43820.1| GTP-binding protein [Proteus mirabilis HI4320]
          Length = 496

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+ 
Sbjct: 210 KLAIVGRPNVGKSTLTNRMLGEERVVVYDMPGTTRDSIYIPMERDGKEYILIDTAGVRKR 269

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK  + +T   +E+ ++ LL+  I++++ IS
Sbjct: 270 GKVKETVEKFSVIKTLQAIEDCNVALLV--IDAREGIS 305



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD      +L+G    I DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELDGEEFIIIDTGGIDGAE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE     ++   ++ AD++L L
Sbjct: 65  EGVETHMASQSLQAIQEADIVLFL 88


>gi|242069257|ref|XP_002449905.1| hypothetical protein SORBIDRAFT_05g025430 [Sorghum bicolor]
 gi|241935748|gb|EES08893.1| hypothetical protein SORBIDRAFT_05g025430 [Sorghum bicolor]
          Length = 684

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +    +G   K+ DTAGIR  
Sbjct: 394 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTADGEKYKLIDTAGIRRR 453

Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307
             ++      E   +KR F  +  +D++ L+ E
Sbjct: 454 AAVISAGSTTESLSVKRAFRAIRRSDVVALVIE 486



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           K  +S HI    L        K+ I+G  N GKS+LFN L   + AIV D PG TRD L
Sbjct: 146 KTSVSKHIPDNLLP-------KVAIIGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRL 197


>gi|16801117|ref|NP_471385.1| GTP-binding protein EngA [Listeria innocua Clip11262]
 gi|26006727|sp|Q92A71|DER_LISIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|16414552|emb|CAC97281.1| lin2051 [Listeria innocua Clip11262]
          Length = 436

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 5/97 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSS+ NAL  +D  IV+DI GTTRD +      +G    + DTAG+R+ 
Sbjct: 177 KFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             +    EK  + R    +E +D++L++  IN+++ I
Sbjct: 237 GKVYESTEKYSVLRAMRAIERSDVVLVV--INAEEGI 271



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++   +  + ++ AD+I+ +
Sbjct: 66  EPFLEQIRAQAEIAIDEADVIIFI 89


>gi|300812163|ref|ZP_07092607.1| ribosome-associated GTPase EngA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496848|gb|EFK31926.1| ribosome-associated GTPase EngA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 435

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + VAIV D PG TRD         G+   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTLFNRIINERVAIVEDRPGVTRDRNYARASWMGHQFSIIDTGGITWED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
             +++E   +  + +E AD+I++L +
Sbjct: 66  STIDEEIRAQAEIAIEEADVIVMLAD 91



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 29/179 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSS+ N L  ++  IV +  GTTRD +      +G   ++ DTAGIR    +
Sbjct: 179 VIGRPNVGKSSIVNRLLGEERVIVANEEGTTRDAIDTPFVKDGTKFRVVDTAGIRRRGKV 238

Query: 284 ---VEKEGIKRTFLEVENADL-ILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLY 332
               EK  + R    +E +D+ IL+L      +E        +    +  I    K DL 
Sbjct: 239 YEKTEKYSVMRAMSAMERSDVAILVLDASTGIREQDKHVAGYAHEAGLGMIIAVNKWDLP 298

Query: 333 -----------STYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                      +   EE+ +L       +S+ TG+ +++L   +K +  NK +++  S+
Sbjct: 299 KKDSSSGKDFEAVIREEFSYLDYAPIVFVSAKTGKNVDQLPKMVKEVYENKNQRIQSSV 357


>gi|313675797|ref|YP_004053793.1| ribosome-associated GTPase enga [Marivirga tractuosa DSM 4126]
 gi|312942495|gb|ADR21685.1| ribosome-associated GTPase EngA [Marivirga tractuosa DSM 4126]
          Length = 435

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ ILG  NAGKSS  NAL   +  IVTDI GTTRD +     L G    ++DTAG+R  
Sbjct: 177 RLAILGRPNAGKSSFLNALLGDERTIVTDIAGTTRDSINTHYKLYGKDFILTDTAGLRKK 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +T D +E     R    ++++D+ +++
Sbjct: 237 TKTKDDIEFYSTIRAIQALQDSDVCIVM 264



 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AI+ +  G TRD    +    G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRLVERKQAIMDNESGVTRDRQYGEAQWIGKKFTVIDTGGYVTGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI EKE  K+    ++ A +IL +
Sbjct: 65  NDIFEKEIRKQVKEALKEATVILFM 89


>gi|119775495|ref|YP_928235.1| GTP-binding protein EngA [Shewanella amazonensis SB2B]
 gi|166225853|sp|A1S859|DER_SHEAM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|119767995|gb|ABM00566.1| small GTP-binding protein domain [Shewanella amazonensis SB2B]
          Length = 488

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADYPGLTRDRKYGRAHLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +E +  +++   +E AD++L + +  +
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARA 93



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ +G    + DTAG+R  
Sbjct: 201 KLAIIGKPNVGKSTLTNRILGEERVVVYDQPGTTRDSVYIPMERDGRNYVLIDTAGVRRR 260

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
               +++EK  + +T   VE+++++LL+
Sbjct: 261 ARVHEVIEKFSVIKTLKAVEDSNVVLLV 288


>gi|89901081|ref|YP_523552.1| GTP-binding protein EngA [Rhodoferax ferrireducens T118]
 gi|122479081|sp|Q21W32|DER_RHOFD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|89345818|gb|ABD70021.1| Small GTP-binding protein domain [Rhodoferax ferrireducens T118]
          Length = 447

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG+R  
Sbjct: 181 KLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFERNGQKFELVDTAGLRRR 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +E+++++LLL
Sbjct: 241 GKVFEAIEKFSVVKTLQAIESSNVVLLL 268



 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L K   AIV D  G TRD    +     +   + DT G  E D
Sbjct: 5   VALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNAKQGKHEFIVIDTGGF-EPD 63

Query: 282 DI--VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               + KE  K+T   V  AD+++ +  +++++ IS
Sbjct: 64  AAGGIFKEMAKQTTQAVAEADVVIFV--VDAREGIS 97


>gi|313623121|gb|EFR93388.1| ribosome-associated GTPase EngA [Listeria innocua FSL J1-023]
          Length = 436

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 5/97 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSS+ NAL  +D  IV+DI GTTRD +      +G    + DTAG+R+ 
Sbjct: 177 KFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             +    EK  + R    +E +D++L++  IN+++ I
Sbjct: 237 GKVYESTEKYSVLRAMRAIERSDVVLVV--INAEEGI 271



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++   +  + ++ AD+I+ +
Sbjct: 66  EPFLEQIRAQAEIAIDEADVIIFI 89


>gi|309805732|ref|ZP_07699772.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 09V1-c]
 gi|309807723|ref|ZP_07701658.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 01V1-a]
 gi|312875513|ref|ZP_07735516.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2053A-b]
 gi|315653509|ref|ZP_07906430.1| ribosome-associated GTPase EngA [Lactobacillus iners ATCC 55195]
 gi|308164985|gb|EFO67228.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 09V1-c]
 gi|308169034|gb|EFO71117.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 01V1-a]
 gi|311089024|gb|EFQ47465.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2053A-b]
 gi|315489200|gb|EFU78841.1| ribosome-associated GTPase EngA [Lactobacillus iners ATCC 55195]
          Length = 435

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 29/185 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +  I+G  N GKSS+ N++  ++  IV D+ GTTRD +    + +G    I DTAGI
Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326
           R    +   VEK  + R+   +E +D+ +++ +     I   K I   +       I   
Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292

Query: 327 TKSDLYSTYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368
            K D+ S  T           +E+ +L       +S+ TG+ +E++++ +K++  N+ ++
Sbjct: 293 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352

Query: 369 LPFSI 373
           +  S+
Sbjct: 353 IQSSV 357



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D PG TRD +  +    G    + DT GI   D
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
           +++E++   +  + +  AD+I++L ++
Sbjct: 66  NVIEEQIKTQAEIAINEADVIVMLSDV 92


>gi|205355964|ref|ZP_03222732.1| putative GTP binding protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346088|gb|EDZ32723.1| putative GTP binding protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 460

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD    ++ +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTEIHINSKKAMLIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305
           ++   + +K+  L+V + +D+IL L
Sbjct: 64  ELF--KNVKKNTLKVAKESDIILYL 86



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 27/144 (18%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211
           L  LY +W++K  H   F+ +D    EEE++++F                  +  +GK  
Sbjct: 149 LDELY-EWLEKFLH-EEFLISD----EEENLEDFLE----------------YYEEGKEF 186

Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E+ +N  ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++
Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIE 246

Query: 271 ISDTAGIRETDDI--VEKEGIKRT 292
             DTAGIR+   I  +E+  + RT
Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRT 270


>gi|313123537|ref|YP_004033796.1| GTP-binding protein enga [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280100|gb|ADQ60819.1| GTP-binding protein engA [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|325684298|gb|EGD26471.1| ribosome-associated GTPase EngA [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 435

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + VAIV D PG TRD         G+   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTLFNRIINERVAIVEDRPGVTRDRNYARASWMGHQFSIIDTGGITWED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
             +++E   +  + +E AD+I++L +
Sbjct: 66  STIDEEIRAQAEIAIEEADVIVMLAD 91



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 29/179 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSS+ N L  ++  IV +  GTTRD +      +G   ++ DTAGIR    +
Sbjct: 179 VIGRPNVGKSSIVNRLLGEERVIVANEEGTTRDAIDTPFVKDGTKFRVVDTAGIRRRGKV 238

Query: 284 ---VEKEGIKRTFLEVENADL-ILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLY 332
               EK  + R    +E +D+ IL+L      +E        +    +  I    K DL 
Sbjct: 239 YEKTEKYSVMRAMSAMERSDVAILVLDASTGIREQDKHVAGYAHEAGLGMIIAVNKWDLP 298

Query: 333 -----------STYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                      +   EE+ +L       +S+ TG+ +++L   +K +  NK +++  S+
Sbjct: 299 KKDSSSGKDFEAVIREEFSYLDYAPIVFVSAKTGKNIDQLPKMVKEVYENKNQRIQSSV 357


>gi|296133088|ref|YP_003640335.1| ribosome-associated GTPase EngA [Thermincola sp. JR]
 gi|296031666|gb|ADG82434.1| ribosome-associated GTPase EngA [Thermincola potens JR]
          Length = 440

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L +++  H+ +    E   +  KI ++G  N GKSS+ NAL  ++  IV+D+ GTTRD +
Sbjct: 157 LLDEVVKHLPEYAAEEYGDDVIKIAVIGRPNVGKSSIVNALLGEERVIVSDVAGTTRDAI 216

Query: 259 TIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLL 305
               +  G    + DTAG+R+    D+  E+  + R+   V+ +D++L++
Sbjct: 217 DTYFERGGQRYLLIDTAGMRKKGKIDEPTERYSVLRSLKAVDRSDVVLMI 266



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 8/94 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIR 278
           + I+G  N GKS+LFN +A   +AIV D PG TRD +  D   LD E  LV   DT GI 
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGSRIAIVEDKPGVTRDRIYKDAVWLDKEFTLV---DTGGIE 62

Query: 279 ETDDIVEKEG--IKRTFLEVENADLILLLKEINS 310
             DD        +++  L +E A++IL + +  S
Sbjct: 63  FRDDKGSMSDLILQQARLAIEEAEVILFVVDARS 96


>gi|325981901|ref|YP_004294303.1| ribosome-associated GTPase EngA [Nitrosomonas sp. AL212]
 gi|325531420|gb|ADZ26141.1| ribosome-associated GTPase EngA [Nitrosomonas sp. AL212]
          Length = 464

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           KI I+G  N GKS+L N L  ++  I  D PGTTRD + +D   +     + DTAG+R  
Sbjct: 176 KIAIVGRPNVGKSTLINTLLGEERVIAFDQPGTTRDSIYVDFTHKDKQYTLIDTAGLRRR 235

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  + +EK    +T   +E+A++++L+  ++++ EIS
Sbjct: 236 GQVHETIEKFSAIKTLQAIEDANVVVLI--LDARNEIS 271



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 13/91 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           +V++G  N GKS+LFN L +   AIV DIPG TRD       +  + YLV   DT G   
Sbjct: 5   LVLVGRPNVGKSTLFNRLTRTRDAIVADIPGLTRDRHYGAGRVGDKPYLV--VDTGGF-- 60

Query: 280 TDDIVEKEGI-----KRTFLEVENADLILLL 305
             + V KEG+     K+T   ++ AD +L +
Sbjct: 61  --EPVIKEGVLYAMAKQTIQAIDEADKVLFI 89


>gi|114319757|ref|YP_741440.1| GTP-binding protein EngA [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312352|sp|Q0AB37|DER_ALHEH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|114226151|gb|ABI55950.1| small GTP-binding protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 467

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I I+G  N GKS+L N L  ++  +V D+PGTTRD + I L+ +G    + DTAG+R  
Sbjct: 183 RIAIVGRPNVGKSTLVNRLLGEERVLVYDMPGTTRDSVFIPLERDGRPYTLIDTAGMRRR 242

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               + VEK  + +T   +E A +++L+  I++++ ++
Sbjct: 243 ARVHETVEKFSVIQTLKAMEAAHVVILV--IDAREGVT 278



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD       +      + DT G+ +  
Sbjct: 5   IALVGRPNVGKSTLFNQLTRSRDALVADHPGLTRDRQYGVGKVGERPYIVVDTGGLGDDP 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE+   ++    +E AD IL L
Sbjct: 65  EGVEQGMHQQALAAIEEADAILFL 88


>gi|99905857|gb|ABF68623.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI ++  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|325265091|ref|ZP_08131818.1| ribosome-associated GTPase EngA [Clostridium sp. D5]
 gi|324029781|gb|EGB91069.1| ribosome-associated GTPase EngA [Clostridium sp. D5]
          Length = 442

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 6/121 (4%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           +S+  L D+L   +++++H  +    E   +  +I I+G  N GKSS+ N L  ++  IV
Sbjct: 149 ASRLGLGDML---DEVTAHFPKSAGEEEEDDRPRIAIVGKPNVGKSSIINKLLGENRVIV 205

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILL 304
           +D+ GTTRD +  ++  +G      DTAG+R    I   +E+  I RT   VE AD++L+
Sbjct: 206 SDVAGTTRDAIDTEILHDGKEYIFIDTAGLRRKSRIKEELERYSIIRTVTAVERADVVLI 265

Query: 305 L 305
           +
Sbjct: 266 V 266



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVSWLDREFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            D++  +  ++  + ++ AD+I+ + ++
Sbjct: 66  RDVILSQMREQAQIAIDTADVIIFITDV 93


>gi|292806496|gb|ADE42378.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + ++LIL
Sbjct: 69  ALLSKEIKALNLKAAQMSNLIL 90


>gi|302191345|ref|ZP_07267599.1| GTP-binding protein EngA [Lactobacillus iners AB-1]
 gi|309804160|ref|ZP_07698238.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 11V1-d]
 gi|312872309|ref|ZP_07732379.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2062A-h1]
 gi|312873983|ref|ZP_07734019.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2052A-d]
 gi|325912827|ref|ZP_08175205.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 60-B]
 gi|329921288|ref|ZP_08277726.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 1401G]
 gi|308163743|gb|EFO66012.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 11V1-d]
 gi|311090532|gb|EFQ48940.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2052A-d]
 gi|311092132|gb|EFQ50506.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2062A-h1]
 gi|325477820|gb|EGC80954.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 60-B]
 gi|328934580|gb|EGG31084.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 1401G]
          Length = 435

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 29/185 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +  I+G  N GKSS+ N++  ++  IV D+ GTTRD +    + +G    I DTAGI
Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326
           R    +   VEK  + R+   +E +D+ +++ +     I   K I   +       I   
Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292

Query: 327 TKSDLYSTYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368
            K D+ S  T           +E+ +L       +S+ TG+ +E++++ +K++  N+ ++
Sbjct: 293 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352

Query: 369 LPFSI 373
           +  S+
Sbjct: 353 IQSSV 357



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D PG TRD +  +    G    + DT GI   D
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
           +++E++   +  + +  AD+I++L ++
Sbjct: 66  NVIEEQIKTQAEIAINEADVIVMLSDV 92


>gi|229824833|ref|ZP_04450902.1| hypothetical protein GCWU000182_00182 [Abiotrophia defectiva ATCC
           49176]
 gi|229790836|gb|EEP26950.1| hypothetical protein GCWU000182_00182 [Abiotrophia defectiva ATCC
           49176]
          Length = 445

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSS+ N L  ++  IV+D+ GTTRD +   +   G    + DTAGIR  
Sbjct: 178 KIAIIGKPNVGKSSIINRLLGENRVIVSDVAGTTRDAIDTRIRRNGKDYIMIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E   I RT   VE AD+++L+
Sbjct: 238 SRIKEDIEYYSIVRTVSAVERADIVVLV 265



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA  D++IV D PG TRD +  D +       + DT GI  +T
Sbjct: 5   VAIVGRPNVGKSTLFNKLAGSDISIVKDTPGVTRDRIYADAEWLNKAFTMIDTGGIEPDT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D++     ++  + ++ AD+I+ + ++ +
Sbjct: 65  SDMMLANMREQAEIAIDTADVIIFITDVKT 94


>gi|325285620|ref|YP_004261410.1| GTP-binding protein engA [Cellulophaga lytica DSM 7489]
 gi|324321074|gb|ADY28539.1| GTP-binding protein engA [Cellulophaga lytica DSM 7489]
          Length = 434

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  ++  IVTD+ GTTRD +    +  G+   + DTAGIR  
Sbjct: 175 RFAVVGRPNAGKSSFINALIGEERYIVTDVAGTTRDSIDTKYNRFGFEFNLVDTAGIRRK 234

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E+AD+ +L+
Sbjct: 235 AKVKEDLEFYSVMRSVRAIEHADVCILM 262



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGVEFSLIDTGGYVLGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           +D+ E E  K+  L ++ AD I+ + ++ S
Sbjct: 65  EDVFEAEIDKQVELAIDEADAIVFMVDVES 94


>gi|311113301|ref|YP_003984523.1| ribosome-associated GTPase EngA [Rothia dentocariosa ATCC 17931]
 gi|310944795|gb|ADP41089.1| ribosome-associated GTPase EngA [Rothia dentocariosa ATCC 17931]
          Length = 529

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA  + A+V D+ GTTRD +   +DL GY  +  DTAGIR
Sbjct: 252 RVALIGRPNVGKSSLLNKLAGSERAVVNDLAGTTRDPIDEVIDLGGYPWRFIDTAGIR 309



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++ N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 78  VAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWVGKRFTLVDTGGWESDA 137

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++ +   +  + VE AD+++L+
Sbjct: 138 RGIDAQVADQAEIAVEQADVVILV 161


>gi|282855425|ref|ZP_06264746.1| ribosome-associated GTPase EngA [Pyramidobacter piscolens W5455]
 gi|282586721|gb|EFB91968.1| ribosome-associated GTPase EngA [Pyramidobacter piscolens W5455]
          Length = 443

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + ++G  N GKSS+ NAL     ++V+DIPGTTRD +   L+ +G   +I DTAG+R   
Sbjct: 178 VALVGRPNVGKSSILNALTGSQRSLVSDIPGTTRDSIDAVLEYKGERFRIVDTAGLRRKS 237

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI 308
              D +E     RT   V+  D+ + + ++
Sbjct: 238 RVKDDIEFYSTVRTMDAVDQCDVAIFVMDV 267



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 24/165 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN +  +  AIV D+PG TRD L   +  +     + DT G+   D
Sbjct: 4   VSIVGRPNVGKSSLFNRIIGERRAIVDDMPGVTRDRLYGCVQWKDKSFYVVDTGGLLLKD 63

Query: 282 DIVEKEGIK-RTFLEVENADLIL------------------LLKEINSKKEISFPKNIDF 322
                EG+K + F  +E +D+++                  +L+  +S   ++  K  DF
Sbjct: 64  KDPIMEGMKDQIFQAIEESDVVIFMVDGSRGVTWMDEDVAQVLRSHSSMVILAVNKIDDF 123

Query: 323 IFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNK 365
                + D+   Y+  ++ +  +S+    G++EL++++  +L +K
Sbjct: 124 ---SHEDDVAEAYSLGFEKVVGVSALHDRGIDELLDQVVQMLGDK 165


>gi|258515338|ref|YP_003191560.1| GTP-binding protein EngA [Desulfotomaculum acetoxidans DSM 771]
 gi|257779043|gb|ACV62937.1| small GTP-binding protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 443

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 15/145 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N++  ++  IV+++PGTTRD +    + +     + DTAGIR  
Sbjct: 180 KIAVIGRPNVGKSSLVNSILGQERVIVSNVPGTTRDAIDTPFERDDKHYVLIDTAGIRRK 239

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKS 329
             I    EK  + R+   ++ +D+ L++ +      +  K I   +  K    I I  K 
Sbjct: 240 SRIYISTEKYSVLRSLKAIDRSDVALIVLDAEEGVTDQDKRIAGYAHEKGKASIIIINKW 299

Query: 330 DLYSTYTEEYDHLISSFTGEGLEEL 354
           DL     E+ DH +S FT +  EE+
Sbjct: 300 DL----IEKDDHTMSIFTRKIREEM 320



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           + I+G  N GKS+LFN +    VAIV   PG TRD L  + +  G    + DT GI  +E
Sbjct: 6   VAIVGRPNVGKSTLFNRIVGARVAIVEGQPGITRDRLYQEAEWSGRSFMLVDTGGIDFQE 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D+IV      +  L +E ADL+L + +  S
Sbjct: 66  NDEIVSNVR-HQARLAIEEADLVLFVVDARS 95


>gi|227537540|ref|ZP_03967589.1| GTP-binding protein EngA [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242677|gb|EEI92692.1| GTP-binding protein EngA [Sphingobacterium spiritivorum ATCC 33300]
          Length = 441

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  I+G  N GKSSL NAL  K+  IVT + GTTRD + I  +  G+   + DTAG+R  
Sbjct: 183 KYTIVGRPNVGKSSLTNALLGKERNIVTPVAGTTRDSIRIHYNQFGHEFLLIDTAGMRRK 242

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + RT   +E++D+++L+
Sbjct: 243 SKVNEDIEFYSVMRTIKALEDSDVVILM 270



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV D  G TRD      +  G    + DT G +  +
Sbjct: 13  VAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYESAEWIGKKFTVIDTGGFVHGS 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD+ E+    + ++ +E A +I+ + ++ +
Sbjct: 73  DDVFEEAIRDQVYIAIEEASVIIFMVDVTT 102


>gi|254417083|ref|ZP_05030829.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196176061|gb|EDX71079.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 461

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 11/95 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI--------DLDLEGYLVKISD 273
           + I+G  N GKSSL NAL  +  AIV+ + GTTRD + +        + + E  L ++ D
Sbjct: 179 VAIVGRPNVGKSSLLNALTGEKRAIVSSVSGTTRDAIDMIVERPGNPETETESQLYRLID 238

Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           TAGIR   ++    E  GI R F  +  AD++L +
Sbjct: 239 TAGIRRKKNVEYGPEFFGINRAFKAIRRADVVLFV 273



 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 30/61 (49%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N LA    AIV D PG TRD        +     I DT G+   D
Sbjct: 6   VAVIGRPNVGKSTLVNRLAGVMDAIVHDQPGVTRDRTYRPAFWQDRDYSIVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|169831333|ref|YP_001717315.1| small GTP-binding protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|238688334|sp|B1I462|DER_DESAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169638177|gb|ACA59683.1| small GTP-binding protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 438

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 29/182 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL NA+  ++  IV+D+PGTTRD +      +G      DTAG+R  
Sbjct: 177 RIAVVGRPNVGKSSLVNAILGEERVIVSDVPGTTRDAVDTLFRRDGREYVFIDTAGMRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF---PKNIDFIFIGTKS 329
             I   +E   + R    +E +DL L++ +      N  + I+          I +  K 
Sbjct: 237 ARIRESIEYYSVLRAKKALERSDLALVVLDFTDGVTNQDQRIAGLAEEAGKGTIIVVNKW 296

Query: 330 DL-------YSTYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
           DL        S Y EE               +S+ +G G+ ++++ ++S++    +++P 
Sbjct: 297 DLAEGSGVSASRYQEEVRRELIFIGYAPVLCVSAVSGLGVPKILDTVESVMGEYRRQIPT 356

Query: 372 SI 373
           S+
Sbjct: 357 SM 358



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           + I+G  N GKS+LFN +  +  A+V   PG TRD L  ++D  G    + DT GI  + 
Sbjct: 6   VAIVGRPNVGKSTLFNRILGRQAAVVDAEPGVTRDRLYQEVDWAGRHFILVDTGGIESQA 65

Query: 280 TDDIVEK--EGIKRTFLEVENADLILLLKEINS 310
            +D+  +  + ++R   E   A LIL + + N+
Sbjct: 66  GEDMANRVFDQVRRAMAE---AQLILYVLDGNA 95


>gi|171913936|ref|ZP_02929406.1| GTP-binding protein [Verrucomicrobium spinosum DSM 4136]
          Length = 502

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+N   + I+G  N GKS+LFN LA K++AIV D PG TRD L            I DT 
Sbjct: 3   IQNPKMVAIVGRPNVGKSALFNRLAGKNIAIVHDRPGVTRDRLVATCRRGVVPFDIMDTG 62

Query: 276 GIRET-DDIVEKEGIKRTFLEVENADLILLL 305
           GI  T +D    +      L +E ADLIL +
Sbjct: 63  GIGATIEDEFAAQVQAEANLAMEEADLILFV 93



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I I+G  NAGKSSL NA+  +   IV++I GTTRD + I   + G    + DTAG+R  
Sbjct: 220 RIAIVGKPNAGKSSLVNAILGEQRTIVSEIAGTTRDAIDIPCTVAGKNYTLVDTAGLRRK 279

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +  D VE     +    +  ADL LL+
Sbjct: 280 AKIQDAVESFSAMQATKTIRRADLCLLM 307


>gi|87306807|ref|ZP_01088953.1| probable GTP-binding protein [Blastopirellula marina DSM 3645]
 gi|87290180|gb|EAQ82068.1| probable GTP-binding protein [Blastopirellula marina DSM 3645]
          Length = 473

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 3/87 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--R 278
           +IVI+G  N GKSSLFN LA + +AIV ++ G TRD +T  +       +I DT GI   
Sbjct: 5   QIVIVGRPNVGKSSLFNWLAGRRLAIVDNVAGVTRDRMTYLMQWRERYFEIVDTGGIGVN 64

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           + DD+ + E  ++  + +++ADLIL +
Sbjct: 65  DVDDLTD-EIEQQIAIAIDSADLILFV 90



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS+  N LA+ +  IV+++ GTTRD + I  +L+G      DT G+R  
Sbjct: 179 KIAVVGRRNVGKSTFVNTLARAERMIVSEVAGTTRDSVDIRFELDGKSFTAIDTPGLRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   V+     R    +  AD++L+    ++ ++IS
Sbjct: 239 VSVKTDVDFYSTHRAERSIRRADVVLMF--FDASQQIS 274


>gi|323706096|ref|ZP_08117665.1| ribosome-associated GTPase EngA [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534540|gb|EGB24322.1| ribosome-associated GTPase EngA [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 439

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI  +G  N GKSSL N +  ++ AIV+DIPGTTRD L    + +     I DTAG+R+ 
Sbjct: 178 KISFIGKPNVGKSSLVNKILGEERAIVSDIPGTTRDALDTYFEKDDRKYVIIDTAGMRKK 237

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305
              +D +E+  + R    ++ +D+ +L+
Sbjct: 238 GRIEDKIERYSVLRALAAIDRSDICILV 265



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 10/102 (9%)

Query: 219 GYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            Y +V I+G  N GKS+LFN +  + ++IV D PG TRD +  + +       + DT G+
Sbjct: 2   AYPMVGIVGRPNVGKSTLFNKITGQRISIVEDQPGVTRDRIYFETEWMDKRFILVDTGGL 61

Query: 278 RETDDIVEKEGIKRTFLEVENA----DLILLLKEINSKKEIS 315
            E D   E E   +  ++VE A    DLIL +  I+ K+ +S
Sbjct: 62  -EPDS--EDEFFSKIKMQVEAALKTVDLILFV--IDGKEGVS 98


>gi|83319844|ref|YP_424546.1| GTP-binding protein EngA [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|123535633|sp|Q2SRR7|DER_MYCCT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|83283730|gb|ABC01662.1| GTP-binding protein engA [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 435

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 6/120 (5%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L + + S+IS+  + E+  +  KI I+G  N GKSSL N+L  ++  IV++I GTT D +
Sbjct: 155 LLDKVISYISKNDV-ELKDDSTKIAIIGKPNVGKSSLVNSLVNENRMIVSEIEGTTLDAV 213

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            I          + DTAGIR+   +   VEK    R+   + N+D++LL+  I++ K I+
Sbjct: 214 DISFSYNKKKYIVIDTAGIRKKSKLGQTVEKYSYLRSLSAIANSDIVLLM--IDATKPIT 271



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN + K+  +IV + PG TRD +  + +       + DT GI    
Sbjct: 6   VAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSNAEWLTREFILIDTGGISVDQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            +   E   +T + +E AD+I+ +
Sbjct: 66  QLFSNEIQIQTQIAIEQADVIIFV 89


>gi|330830064|ref|YP_004393016.1| GTP-binding protein engA [Aeromonas veronii B565]
 gi|328805200|gb|AEB50399.1| GTP-binding protein engA [Aeromonas veronii B565]
          Length = 498

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K  I+G  N GKS+L N +  +D  IV D+PGTTRD + I ++ +     + DTAG+R  
Sbjct: 214 KFAIVGRPNVGKSTLTNRMLGEDRVIVYDMPGTTRDSVYIPMERDEQKYVVIDTAGVRRR 273

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  + VEK  + +T   +E+A++ LL+  I++++ I+
Sbjct: 274 GKVHETVEKFSVIKTLKAIEDANVCLLV--IDAQETIT 309



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L      + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGELEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E +  +++ L +E AD++L +
Sbjct: 65  EGIELKMAEQSLLAIEEADVVLFM 88


>gi|122702577|emb|CAL88478.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI ++  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702355|emb|CAL88368.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI ++  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  ALLSKEIKAFNLKAAQMSDLILYV 92


>gi|189345964|ref|YP_001942493.1| GTP-binding protein EngA [Chlorobium limicola DSM 245]
 gi|238692187|sp|B3EFY1|DER_CHLL2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189340111|gb|ACD89514.1| small GTP-binding protein [Chlorobium limicola DSM 245]
          Length = 437

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 49/89 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + ++  AIV   PG TRD   +  + +G    + DT G    +
Sbjct: 5   IALVGRPNVGKSTLFNRILRQKSAIVDSTPGVTRDRHIMPGEWQGKQFLLMDTGGYCAAN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           D++    I++T   + +AD ++ L ++ S
Sbjct: 65  DVISSSMIEQTLTAIRDADCVIFLTDVRS 93



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKSS  NAL   +  IV+DIPGTTRD +      +     + DTAG+R+ 
Sbjct: 179 KLAVVGRPNVGKSSFVNALLGTNRHIVSDIPGTTRDAIDSRFIRKQQEYVLIDTAGLRKR 238

Query: 281 DDI 283
             I
Sbjct: 239 TKI 241


>gi|225389099|ref|ZP_03758823.1| hypothetical protein CLOSTASPAR_02845 [Clostridium asparagiforme
           DSM 15981]
 gi|225044833|gb|EEG55079.1| hypothetical protein CLOSTASPAR_02845 [Clostridium asparagiforme
           DSM 15981]
          Length = 441

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSS+ N L  ++  IV+DI GTTRD +  ++  +G      DTAG+R  
Sbjct: 179 RIAVVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAVDTEIVHDGTPYVFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   +E+  I RT   VE AD+++++  I++K+ ++
Sbjct: 239 SKIHEELERYSIIRTVTAVERADIVVVV--IDAKEGVT 274



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  D         + DT GI  +T
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGETISIVKDTPGVTRDRIYADCSWLNMNFTLIDTGGIEPDT 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            D++  +  ++  + +  AD+I+ + ++
Sbjct: 66  SDVILSQMREQAEIAIATADVIVFIVDV 93


>gi|309807087|ref|ZP_07701066.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 03V1-b]
 gi|308166517|gb|EFO68717.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 03V1-b]
          Length = 431

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 29/185 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +  I+G  N GKSS+ N++  ++  IV D+ GTTRD +    + +G    I DTAGI
Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326
           R    +   VEK  + R+   +E +D+ +++ +     I   K I   +       I   
Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292

Query: 327 TKSDLYSTYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368
            K D+ S  T           +E+ +L       +S+ TG+ +E++++ +K++  N+ ++
Sbjct: 293 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352

Query: 369 LPFSI 373
           +  S+
Sbjct: 353 IQSSV 357



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 50/87 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D PG TRD +  +    G    + DT GI   D
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
           +++E++   +  + +  AD+I+LL ++
Sbjct: 66  NVIEEQIKTQAEIAINEADVIVLLSDV 92


>gi|299144092|ref|ZP_07037172.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518577|gb|EFI42316.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 439

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++  +G  N GKSSL N +  ++  IVTDIPGTTRD +    +  G      DTAG+R+ 
Sbjct: 177 RVTFIGKPNVGKSSLINRILGEERVIVTDIPGTTRDAIDSKFNFNGENYVFVDTAGLRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  + RT   +E A + +L+
Sbjct: 237 KKIYENIERYSVIRTLTAIERASVCVLV 264



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  K ++I  D PG TRD +  D         + DT G+   D
Sbjct: 6   VSIIGTPNVGKSTLFNKIVGKKISITEDTPGVTRDRIYSDATWLNKQFLLVDTGGLDLKD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKE 307
           + +    IK +  L ++ +D+I+ L +
Sbjct: 66  EDIFMSSIKAQVDLALDMSDVIIFLTD 92


>gi|295091914|emb|CBK78021.1| ribosome-associated GTPase EngA [Clostridium cf. saccharolyticum
           K10]
          Length = 444

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 23/154 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKSS+ N L  ++  IV++I GTTRD +  ++   G      DTAG+R  
Sbjct: 181 RIAIVGKPNVGKSSIVNKLLGENRVIVSNIAGTTRDAVDTEIVHNGTEYVFIDTAGLRRK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKS 329
           + I   +E+  I RT   VE AD++L+       + E ++K   I+  +    I +  K 
Sbjct: 241 NKIKEELERYSIIRTVTAVERADVVLVVIDATEGVTEQDAKIAGIAHDRGKGIIIVVNKW 300

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           D      E+ D  I  +T        NKIK+ILS
Sbjct: 301 DA----IEKNDKTIYEYT--------NKIKTILS 322



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN LA + ++IV D PG TRD +  D         + DT GI  ++
Sbjct: 8   VAVVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADCTWLDKAFTLIDTGGIEPDS 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+  +  ++  + +  AD+I+ + ++
Sbjct: 68  RDIILAQMREQAEIAIATADVIIFIVDV 95


>gi|294055426|ref|YP_003549084.1| ribosome-associated GTPase EngA [Coraliomargarita akajimensis DSM
           45221]
 gi|293614759|gb|ADE54914.1| ribosome-associated GTPase EngA [Coraliomargarita akajimensis DSM
           45221]
          Length = 514

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 7/92 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL----EGYLVKISDTAG 276
           +I ++G  N GKSSL NAL +    IV+D+PGTTRD + +DLD     E    +++DTAG
Sbjct: 182 RISLVGRPNVGKSSLGNALLESTRLIVSDVPGTTRDSVELDLDYQKDGESIKFRLADTAG 241

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R    +   VE     RT   +E +D++ L+
Sbjct: 242 LRSKRKVGNPVEYFSNVRTQHAIERSDVVFLV 273



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS LFN L  + ++IV D+PG TRD+++ ++  +  L+   DT GI
Sbjct: 8   VALVGRPNVGKSRLFNRLCGRRMSIVHDMPGVTRDLISTEVRDDYVLL---DTGGI 60


>gi|259500656|ref|ZP_05743558.1| ribosome-associated GTPase EngA [Lactobacillus iners DSM 13335]
 gi|259168040|gb|EEW52535.1| ribosome-associated GTPase EngA [Lactobacillus iners DSM 13335]
          Length = 442

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 29/185 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +  I+G  N GKSS+ N++  ++  IV D+ GTTRD +    + +G    I DTAGI
Sbjct: 180 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 239

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326
           R    +   VEK  + R+   +E +D+ +++ +     I   K I   +       I   
Sbjct: 240 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 299

Query: 327 TKSDLYSTYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368
            K D+ S  T           +E+ +L       +S+ TG+ +E++++ +K++  N+ ++
Sbjct: 300 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 359

Query: 369 LPFSI 373
           +  S+
Sbjct: 360 IQSSV 364



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D PG TRD +  +    G    + DT GI   D
Sbjct: 13  VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
           +++E++   +  + +  AD+I++L ++
Sbjct: 73  NVIEEQIKTQAEIAINEADVIVMLSDV 99


>gi|257453876|ref|ZP_05619154.1| ribosome-associated GTPase EngA [Enhydrobacter aerosaccus SK60]
 gi|257448803|gb|EEV23768.1| ribosome-associated GTPase EngA [Enhydrobacter aerosaccus SK60]
          Length = 467

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G +I I+G  N GKS+L N L  ++  +V D+PGTTRD + I  + +     + DTAG+
Sbjct: 175 DGLRIAIIGRPNVGKSTLVNRLLGEERVVVFDMPGTTRDSIYIPYERDNRHYVLIDTAGV 234

Query: 278 RET---DDIVEKEGIKRTFLEVENADLILLL 305
           R     D+ VEK  + +T   +++A +++++
Sbjct: 235 RRRGRIDEKVEKFSVVKTLQAIKDAHVVIVV 265



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D+ G TRD    D   E     + DT GI E D
Sbjct: 5   VALIGRPNVGKSTLFNQLTRSRQALVADLAGLTRDRQYGDATFEEKSFIVIDTGGIGEVD 64

Query: 282 D---IVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +    ++     ++   +  AD+I+ +  ++S+  I+
Sbjct: 65  EGDGTIDDYMSHQSHTAIHEADIIVFV--VDSRAGIT 99


>gi|237713807|ref|ZP_04544288.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409286|ref|ZP_06085829.1| GTP-binding protein Era [Bacteroides sp. 2_1_22]
 gi|294644703|ref|ZP_06722452.1| small GTP-binding protein domain protein [Bacteroides ovatus SD CC
           2a]
 gi|294805936|ref|ZP_06764803.1| small GTP-binding protein domain protein [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229446254|gb|EEO52045.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352738|gb|EEZ01835.1| GTP-binding protein Era [Bacteroides sp. 2_1_22]
 gi|292639966|gb|EFF58235.1| small GTP-binding protein domain protein [Bacteroides ovatus SD CC
           2a]
 gi|294446818|gb|EFG15418.1| small GTP-binding protein domain protein [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 396

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 14/134 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V++ PGTT D+++  ++++G       DT G
Sbjct: 10  NRLHITLFGRRNSGKSSLINALTGQDTALVSNTPGTTTDLVSKAMEIQGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISF---PKNIDFIFIGTK-- 328
             +  ++ E   I RT   +E  D+ LLL E  +   +KEI      KNI  I +  K  
Sbjct: 70  FDDEGELGELR-ISRTLKAIEKTDIALLLCEDTTFFHEKEILALLKEKNIPVIPVLNKID 128

Query: 329 ----SDLYSTYTEE 338
               SD  +TY EE
Sbjct: 129 IRENSDHLATYIEE 142


>gi|224417838|ref|ZP_03655844.1| GTP-binding protein EngA [Helicobacter canadensis MIT 98-5491]
          Length = 473

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKSSLFN   K  +AI ++I GTTRDV   ++ L+     + DT G+ E+D
Sbjct: 15  IAIMGRPNAGKSSLFNRFCKSRIAITSEIAGTTRDVKKANVSLKDTPFLLLDTGGLDESD 74

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            +   +  K +    E+ADLIL +
Sbjct: 75  SLFV-QVTKHSHNAGESADLILYV 97



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSL NAL  ++ ++V+   GTT D +    ++EG  V   DTAGIR   
Sbjct: 207 IGIIGRVNVGKSSLLNALLGQERSVVSSKAGTTIDPVDEMGEIEGRKVNFVDTAGIRRRG 266

Query: 282 DI--VEKEGIKRTFLEVENADLILLLKEINS 310
            I  +EK  + RT   ++ +D+ +L+ + +S
Sbjct: 267 KIEGLEKFALNRTREILKRSDIAVLVLDASS 297


>gi|166030917|ref|ZP_02233746.1| hypothetical protein DORFOR_00598 [Dorea formicigenerans ATCC
           27755]
 gi|166029184|gb|EDR47941.1| hypothetical protein DORFOR_00598 [Dorea formicigenerans ATCC
           27755]
          Length = 442

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSS+ N L  +   IV+DI GTTRD +  ++   G      DTAG+R  
Sbjct: 179 RVAIVGKPNVGKSSIINKLLGEQRVIVSDIAGTTRDAIDTEIVHNGKEYVFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + I   +E+  I RT   VE AD++L++
Sbjct: 239 NKIKEELERYSIIRTVTAVERADVVLVV 266



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+        + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVSWLDKDFTLIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+  +  ++  + ++ +D+I+ + ++
Sbjct: 66  KDIILSQMREQAQIAIDTSDVIIFITDV 93


>gi|153816157|ref|ZP_01968825.1| hypothetical protein RUMTOR_02405 [Ruminococcus torques ATCC 27756]
 gi|317500477|ref|ZP_07958701.1| GTP-binding protein engA [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089422|ref|ZP_08338321.1| GTP-binding protein engA [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846492|gb|EDK23410.1| hypothetical protein RUMTOR_02405 [Ruminococcus torques ATCC 27756]
 gi|316898232|gb|EFV20279.1| GTP-binding protein engA [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404790|gb|EGG84328.1| GTP-binding protein engA [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 441

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSS+ N L  ++  IV+DI GTTRD +  ++   G      DTAG+R  
Sbjct: 179 RVAIVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAIDTEILHNGKEYIFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + I   +E+  I RT   VE AD++L++
Sbjct: 239 NKIKEELERYSIIRTVTAVERADVVLMV 266



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVTWLDKEFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+  +  ++  + ++ AD+I+ + ++
Sbjct: 66  KDIILSQMREQAQIAIDTADVIIFITDV 93


>gi|120601244|ref|YP_965644.1| GTP-binding protein EngA [Desulfovibrio vulgaris DP4]
 gi|166198712|sp|A1V9V1|DER_DESVV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|120561473|gb|ABM27217.1| small GTP-binding protein [Desulfovibrio vulgaris DP4]
          Length = 495

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  NAGKSSL NAL   +  IV+D+ GTTRD + +  + +G      DTAG+R  
Sbjct: 232 RLCMLGRPNAGKSSLVNALTGTNRMIVSDVAGTTRDSVDVAFEKDGLSYTFVDTAGVRRR 291

Query: 281 D---DIVEKEGIKRTFLEVENADLILLL 305
               D VE+  +  +      A + LL+
Sbjct: 292 SRITDTVERYSVNSSLKSTTKAHVTLLV 319



 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 16/74 (21%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL----------------TIDLDL 264
           KI ++G  N GKS+LFN L + + AI  D+PG TRD +                T  + L
Sbjct: 4   KIALVGRPNVGKSTLFNRLIRSNRAITHDMPGVTRDRMEGIVRGRNKRPFGIIDTGGITL 63

Query: 265 EGYLVKISDTAGIR 278
           +G+       AGIR
Sbjct: 64  DGHAAVAEGPAGIR 77


>gi|325912018|ref|ZP_08174420.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 143-D]
 gi|325476203|gb|EGC79367.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 143-D]
          Length = 435

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 29/185 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +  I+G  N GKSS+ N++  ++  IV D+ GTTRD +    + +G    I DTAGI
Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326
           R    +   VEK  + R+   +E +D+ +++ +     I   K I   +       I   
Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292

Query: 327 TKSDLYSTYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368
            K D+ S  T           +E+ +L       +S+ TG+ +E++++ +K++  N+ ++
Sbjct: 293 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352

Query: 369 LPFSI 373
           +  S+
Sbjct: 353 IQSSV 357



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 50/87 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D PG TRD +  +    G    + DT GI   D
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
           +++E++   +  + +  AD+I+LL ++
Sbjct: 66  NVIEEQIKTQAEIAINEADVIVLLSDV 92


>gi|242255884|gb|ACS88926.1| GTPase [Helicobacter pylori]
 gi|242255886|gb|ACS88927.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + +
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-N 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|161833759|ref|YP_001597955.1| GTP-binding protein EngA [Candidatus Sulcia muelleri GWSS]
 gi|293977869|ref|YP_003543299.1| ribosome-associated GTPase EngA [Candidatus Sulcia muelleri DMIN]
 gi|229807527|sp|A8Z608|DER_SULMW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|152206249|gb|ABS30559.1| GTP-binding protein EngA [Candidatus Sulcia muelleri GWSS]
 gi|292667800|gb|ADE35435.1| ribosome-associated GTPase EngA [Candidatus Sulcia muelleri DMIN]
          Length = 433

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +N  +I I+G  N GKS+L N L  K+  IVT+I GTTRD + +     G    + DTAG
Sbjct: 172 KNIPRIAIVGRPNVGKSTLINTLLNKNKNIVTNISGTTRDSIDVLYSKFGIECILVDTAG 231

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           IR+  +I   +E   + R    ++N+D+ LL+
Sbjct: 232 IRKKKNIKEDIEFYSVMRAIKSIQNSDVSLLI 263



 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 23/175 (13%)

Query: 221 KIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IR 278
           KIV I+G  N GKS+LFN +     +IV    G TRD      +  G    + DT G   
Sbjct: 3   KIVSIVGRPNVGKSTLFNRIIGYKKSIVNSKSGITRDRNYGFCNWNGIEFCLIDTGGYTN 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNIDFIF--IG 326
           E+ +I +K+  ++    +  +D+IL L + +          SK+     K+I  +   I 
Sbjct: 63  ESKNIFDKKICEQFLFALAESDVILFLVDPSNDILGIDYDISKRIRKLKKSIYLVINKID 122

Query: 327 TKSDLYSTY-------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              ++Y+TY       T+ Y   ISS  G G E+L++ I S      K    +IP
Sbjct: 123 IYKNIYNTYKYCKFGITKTY--CISSINGTGTEKLLDSIVSNFDKNIKIYKKNIP 175


>gi|295692881|ref|YP_003601491.1| GTP-binding protein enga [Lactobacillus crispatus ST1]
 gi|295030987|emb|CBL50466.1| GTP-binding protein engA [Lactobacillus crispatus ST1]
          Length = 435

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 29/179 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSS+ N L  +D  IV +  GTTRD +      +G   K+ DTAGIR    +
Sbjct: 179 VIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTHDGVKFKVVDTAGIRRRGKV 238

Query: 284 ---VEKEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDL- 331
               EK  + R    +E +D++LL+ + ++      K +   +       I +  K DL 
Sbjct: 239 YEKTEKYSVMRAMSAIERSDVVLLVIDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLP 298

Query: 332 --YSTYTEEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              ST  +E++                 +S+ TG+ L+++ N +K +  N+ +++  S+
Sbjct: 299 KKNSTSAKEFEREIRDEFQYLDYAPILFVSAKTGQRLDQIPNMVKEVYDNQNQRIQSSV 357



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD      +  G+   + DT GI    
Sbjct: 6   VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
             +E+E   +  + +E AD+I++L  +
Sbjct: 66  GKIEEEIRAQAEIAIEEADVIVMLTNV 92


>gi|240850057|ref|YP_002971450.1| GTP-binding protein EngA [Bartonella grahamii as4aup]
 gi|240267180|gb|ACS50768.1| GTP-binding protein EngA [Bartonella grahamii as4aup]
          Length = 474

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 24/158 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           I I+G  N GKS+LFN L  + +A+V D PG TRD       L+     + DTAG+ E  
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRRIHAAKLQDLRFDVVDTAGLEEAG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKS 329
           D  +E      T   ++ ADLIL +   ++K  I+ P +++F           + +  KS
Sbjct: 65  DHTLEGRMRSHTKAAIDEADLILFV--FDAKSGIT-PSDLNFASLVRKSGKPIVLVANKS 121

Query: 330 DLYSTYTEEYDH---------LISSFTGEGLEELINKI 358
           +  +    EY+          LIS+  G GL +L + I
Sbjct: 122 ESRAATGGEYEAWSLGLGEPCLISAEHGLGLSDLRDAI 159



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I G  N GKS+L N++ K++  +     G TRD +++D +  G  +K+ DTAG+R  
Sbjct: 205 RIAIAGRPNTGKSTLINSMLKQERLLTGPEAGLTRDSISVDWEWRGRHIKLFDTAGLRRK 264

Query: 281 DDIVEK 286
             I EK
Sbjct: 265 SKIQEK 270


>gi|122702225|emb|CAL88303.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + ++LIL
Sbjct: 69  ALLSKEIKALNLKAAQMSNLIL 90


>gi|189485147|ref|YP_001956088.1| GTP-binding protein EngA [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287106|dbj|BAG13627.1| GTP-binding protein EngA [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 441

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           KI+++G  N GKSS  N +AK++ +IV D PGTTRD LT  +  +G    ++DTAG+   
Sbjct: 178 KIILVGKPNVGKSSFINTVAKEERSIVHDTPGTTRDSLTARIQSDGKEYILTDTAGLHRG 237

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +T D +E      T   +E+AD+ +L+
Sbjct: 238 NKTKDGMEYLSNLSTGHAIEDADVAVLI 265



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+LFN L  +  AI+ + PGTTRD    ++         +DTAG    
Sbjct: 6   KVAIVGRPNVGKSALFNRLIGRKKAIIHETPGTTRDRNDHEVSWRDKNFIATDTAGWSTD 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
                K+  ++  + VE +D++L +
Sbjct: 66  ISAFSKDMSRQLDIAVEKSDIVLFV 90


>gi|227879096|ref|ZP_03996985.1| GTP-binding protein EngA [Lactobacillus crispatus JV-V01]
 gi|256843085|ref|ZP_05548573.1| ribosome-associated GTPase EngA [Lactobacillus crispatus 125-2-CHN]
 gi|256850263|ref|ZP_05555692.1| phosphoglycerate dehydrogenase [Lactobacillus crispatus MV-1A-US]
 gi|262046345|ref|ZP_06019307.1| ribosome-associated GTPase EngA [Lactobacillus crispatus MV-3A-US]
 gi|293379768|ref|ZP_06625900.1| ribosome-associated GTPase EngA [Lactobacillus crispatus 214-1]
 gi|312977269|ref|ZP_07789017.1| ribosome-associated GTPase EngA [Lactobacillus crispatus CTV-05]
 gi|227861337|gb|EEJ68967.1| GTP-binding protein EngA [Lactobacillus crispatus JV-V01]
 gi|256614505|gb|EEU19706.1| ribosome-associated GTPase EngA [Lactobacillus crispatus 125-2-CHN]
 gi|256712900|gb|EEU27892.1| phosphoglycerate dehydrogenase [Lactobacillus crispatus MV-1A-US]
 gi|260573216|gb|EEX29774.1| ribosome-associated GTPase EngA [Lactobacillus crispatus MV-3A-US]
 gi|290923677|gb|EFE00548.1| ribosome-associated GTPase EngA [Lactobacillus crispatus 214-1]
 gi|310895700|gb|EFQ44766.1| ribosome-associated GTPase EngA [Lactobacillus crispatus CTV-05]
          Length = 435

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 29/179 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSS+ N L  +D  IV +  GTTRD +      +G   K+ DTAGIR    +
Sbjct: 179 VIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTHDGVKFKVVDTAGIRRRGKV 238

Query: 284 ---VEKEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDL- 331
               EK  + R    +E +D++LL+ + ++      K +   +       I +  K DL 
Sbjct: 239 YEKTEKYSVMRAMSAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLP 298

Query: 332 --YSTYTEEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              ST  +E++                 +S+ TG+ L+++ N +K +  N+ +++  S+
Sbjct: 299 KKNSTSAKEFEREIRDEFQYLDYAPILFVSAKTGQRLDQIPNMVKEVYDNQNQRIQSSV 357



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD      +  G+   + DT GI    
Sbjct: 6   VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
             +E+E   +  + +E AD+I++L  +
Sbjct: 66  GKIEEEIRAQAEIAIEEADVIVMLTNV 92


>gi|49475207|ref|YP_033248.1| GTP-binding protein EngA [Bartonella henselae str. Houston-1]
 gi|81696225|sp|Q6G5J7|DER_BARHE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|49238012|emb|CAF27217.1| GTP-binding protein [Bartonella henselae str. Houston-1]
          Length = 475

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 24/158 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           I I+G  N GKS+LFN L  + +A+V D PG TRD       L+     + DTAG+ ET 
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRRVHAATLQDLRFDVIDTAGLEETG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKS 329
           D  +E      T   ++ ADLIL +   ++K  I+ P +++F           + +  KS
Sbjct: 65  DHTLEGRMRAHTKAAIDEADLILFV--FDAKSGIT-PSDLNFASLVRKSGKPIVLVANKS 121

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
           +  +    EY+           IS+  G GL +L + I
Sbjct: 122 ESKAAIGGEYEAWSLGLGEPCSISAEHGLGLSDLRDAI 159



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I + G  N GKS+L N +  +D  +     G TRD +++D +  G  +K+ DTAG+R  
Sbjct: 206 RIAVAGRPNTGKSTLINRMLGQDRLLTGPEAGLTRDSISVDWEWRGRHIKLFDTAGLRRK 265

Query: 281 DDIVEK 286
             I EK
Sbjct: 266 SKIQEK 271


>gi|296282892|ref|ZP_06860890.1| GTP-binding protein EngA [Citromicrobium bathyomarinum JL354]
          Length = 464

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +++I+G  N GKS+LFN LA K +A+V D PG TRD    D+ L G    I DTAG  E 
Sbjct: 4   RVIIIGRPNVGKSTLFNRLAGKKLALVDDQPGVTRDRRFGDVTLAGMRFTIVDTAGW-ED 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +D     G  R   EV  AD   +L  ++++  ++
Sbjct: 63  EDPSTLPGRMRMQTEVSIADADAVLFVVDARAGLT 97



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL------EGYLVKISDT 274
           K+ I+G  NAGKS+L N +  +D  +     G TRD + ID +       +   V++ DT
Sbjct: 192 KLAIVGRPNAGKSTLINRMLGEDRLLTGPEAGITRDSIAIDWEWTDPDSGDTREVRLIDT 251

Query: 275 AGIRETDDIVEK 286
           AG+R+  ++VEK
Sbjct: 252 AGMRKKRNVVEK 263


>gi|189463677|ref|ZP_03012462.1| hypothetical protein BACINT_00008 [Bacteroides intestinalis DSM
           17393]
 gi|189438627|gb|EDV07612.1| hypothetical protein BACINT_00008 [Bacteroides intestinalis DSM
           17393]
          Length = 437

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   ++  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +ENAD+ +L+
Sbjct: 237 NKVNEDLEYYSVIRSIRSIENADVCILM 264



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGKEFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +DDI E+E  K+  + V+ AD+IL + ++
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDV 92


>gi|145589468|ref|YP_001156065.1| small GTP-binding protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|189037153|sp|A4SYD7|DER_POLSQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145047874|gb|ABP34501.1| small GTP-binding protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 454

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 34/179 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS+L N L  ++  I  D+PGTTRD + +  +  G    + DTAG+R  
Sbjct: 182 KIAVVGRPNVGKSTLINKLIGEERVIAFDMPGTTRDAIEVPFERNGKPYILVDTAGLRRR 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
             +   +EK  + +T   + + ++++L+  ++++++IS                      
Sbjct: 242 GKVFEAIEKFSVVKTLQAIADCNVVILM--LDAQQDIS---------------------- 277

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           E D  I+ F  E    L+     +  NK+  L   +    R    ++Q +R+L+ A+++
Sbjct: 278 EQDAHIAGFIVEAGRALV-----VAVNKWDGLDAYVKERAR--LEIAQKLRFLDFANVH 329



 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I I+G  N GKS+LFN L +   A+V D  G TRD
Sbjct: 5   ITIVGRPNVGKSTLFNRLTRSRDALVADFSGLTRD 39


>gi|124008576|ref|ZP_01693268.1| GTP-binding protein EngA [Microscilla marina ATCC 23134]
 gi|123985950|gb|EAY25807.1| GTP-binding protein EngA [Microscilla marina ATCC 23134]
          Length = 436

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           KI I+G  NAGKSSL N L  K+ +IVTDI GTTRD +       G    ++DTAG+R  
Sbjct: 178 KIAIVGRPNAGKSSLVNVLTGKERSIVTDIAGTTRDSVNTHYKAFGKNFILTDTAGLRRK 237

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
               D +E     R    +E +D+ +++
Sbjct: 238 SRVKDNIEFYSTMRALRSLEASDICIVM 265



 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++  +I+ +  G TRD +    +  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIEQRKSIMDNQSGVTRDRVYGQAEWIGKFFTVIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +D+ E    ++  + +E + ++L +
Sbjct: 65  EDVFEGAIREQVEIAIEESSVVLFV 89


>gi|122702207|emb|CAL88294.1| GTPase [Helicobacter pylori]
 gi|122702209|emb|CAL88295.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + +
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-E 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|313665450|ref|YP_004047321.1| ribosome-associated GTPase EngA [Mycoplasma leachii PG50]
 gi|312949987|gb|ADR24583.1| ribosome-associated GTPase EngA [Mycoplasma leachii PG50]
          Length = 435

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSL N+L  ++  IV++I GTT D + I          + DTAGIR+ 
Sbjct: 176 KIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDISFSYNKNKYTVIDTAGIRKK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK    R+   + N+D++LL+  I++ K I+
Sbjct: 236 SKLGQTVEKYSYLRSLSAITNSDIVLLM--IDATKPIT 271



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN + K+  +IV + PG TRD +  + +       + DT GI    
Sbjct: 6   VAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSNAEWLTREFILVDTGGISIDQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            +   E   +T + +E AD+I+ +
Sbjct: 66  QLFSNEIQIQTQIAIEQADVIIFV 89


>gi|253827178|ref|ZP_04870063.1| GTP-binding protein EngA [Helicobacter canadensis MIT 98-5491]
 gi|313141379|ref|ZP_07803572.1| GTP-binding protein engA [Helicobacter canadensis MIT 98-5491]
 gi|253510584|gb|EES89243.1| GTP-binding protein EngA [Helicobacter canadensis MIT 98-5491]
 gi|313130410|gb|EFR48027.1| GTP-binding protein engA [Helicobacter canadensis MIT 98-5491]
          Length = 466

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKSSLFN   K  +AI ++I GTTRDV   ++ L+     + DT G+ E+D
Sbjct: 8   IAIMGRPNAGKSSLFNRFCKSRIAITSEIAGTTRDVKKANVSLKDTPFLLLDTGGLDESD 67

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            +   +  K +    E+ADLIL +
Sbjct: 68  SLFV-QVTKHSHNAGESADLILYV 90



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSL NAL  ++ ++V+   GTT D +    ++EG  V   DTAGIR   
Sbjct: 200 IGIIGRVNVGKSSLLNALLGQERSVVSSKAGTTIDPVDEMGEIEGRKVNFVDTAGIRRRG 259

Query: 282 DI--VEKEGIKRTFLEVENADLILLLKEINS 310
            I  +EK  + RT   ++ +D+ +L+ + +S
Sbjct: 260 KIEGLEKFALNRTREILKRSDIAVLVLDASS 290


>gi|323486971|ref|ZP_08092286.1| hypothetical protein HMPREF9474_04037 [Clostridium symbiosum
           WAL-14163]
 gi|323692018|ref|ZP_08106266.1| GTP-binding protein engA [Clostridium symbiosum WAL-14673]
 gi|323399743|gb|EGA92126.1| hypothetical protein HMPREF9474_04037 [Clostridium symbiosum
           WAL-14163]
 gi|323503941|gb|EGB19755.1| GTP-binding protein engA [Clostridium symbiosum WAL-14673]
          Length = 444

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKSS+ N L  ++  IV+DI GTTRD +  ++   G      DTAG+R  
Sbjct: 181 RIAIVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAVDTEIIHNGTEYVFIDTAGLRRK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  I RT   VE AD++L++
Sbjct: 241 SKIKEELERYSIIRTVTAVERADVVLVV 268



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN LA   ++IV D PG TRD +  D         + DT GI  +T
Sbjct: 8   VAVVGRPNVGKSTLFNVLAGDMISIVKDTPGVTRDRIYADCTWLDKAFTLIDTGGIEPDT 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            D++  +  ++  + +  AD+I+ + ++
Sbjct: 68  KDVILAQMREQAEIAIATADVIIFIVDV 95


>gi|320547399|ref|ZP_08041687.1| ribosome-associated GTPase EngA [Streptococcus equinus ATCC 9812]
 gi|320447944|gb|EFW88699.1| ribosome-associated GTPase EngA [Streptococcus equinus ATCC 9812]
          Length = 436

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 31/153 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + I GTTRD +  +  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R+   ++ +D++L++  IN+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSILSNKF 366
            EYD  I+ F    G+G+  ++NK  +I  N +
Sbjct: 272 REYDKRIAGFAHEAGKGIIIVVNKWDTIEKNNY 304



 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFV 89


>gi|222086678|ref|YP_002545212.1| GTP-binding protein [Agrobacterium radiobacter K84]
 gi|254783132|sp|B9J7W1|DER_AGRRK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|221724126|gb|ACM27282.1| GTP-binding protein [Agrobacterium radiobacter K84]
          Length = 475

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L     +I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGEAKLIDLRFRIVDTAGLEE 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305
            D + +E     +T L ++ ADL L +
Sbjct: 63  ADEETLEGRMRAQTELAIDEADLTLFV 89



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N    +D  +     G TRD +++D    G  VK+ DTAG+R  
Sbjct: 207 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVDWTWRGRTVKMFDTAGMRRK 266

Query: 281 DDIVEK 286
             + EK
Sbjct: 267 ARVTEK 272


>gi|291087651|ref|ZP_06347028.2| ribosome-associated GTPase EngA [Clostridium sp. M62/1]
 gi|291074566|gb|EFE11930.1| ribosome-associated GTPase EngA [Clostridium sp. M62/1]
          Length = 446

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 23/154 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKSS+ N L  ++  IV++I GTTRD +  ++   G      DTAG+R  
Sbjct: 183 RIAIVGKPNVGKSSIVNKLLGENRVIVSNIAGTTRDAVDTEIVHNGTEYVFIDTAGLRRK 242

Query: 281 DDI---VEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKS 329
           + I   +E+  I RT   VE AD++L+       + E ++K   I+  +    I +  K 
Sbjct: 243 NKIKEELERYSIIRTVTAVERADVVLVVIDATEGVTEQDAKIAGIAHDRGKGIIIVVNKW 302

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           D      E+ D  I  +T        NKIK+ILS
Sbjct: 303 DA----IEKNDKTIYEYT--------NKIKTILS 324



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN LA + ++IV D PG TRD +  D         + DT GI  ++
Sbjct: 10  VAVVGCPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADCTWLDKAFTLIDTGGIEPDS 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+  +  ++  + +  AD+I+ + ++
Sbjct: 70  RDIILAQMREQAEIAIATADVIIFIVDV 97


>gi|157414681|ref|YP_001481937.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni 81116]
 gi|172047057|sp|A8FKH3|DER_CAMJ8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157385645|gb|ABV51960.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747321|gb|ADN90591.1| GTP-binding protein engA [Campylobacter jejuni subsp. jejuni M1]
 gi|315932681|gb|EFV11611.1| small GTP-binding domain protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 460

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD     + +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305
           ++   + +K+  L+V + +D+IL L
Sbjct: 64  ELF--KNVKKNTLKVAKESDIILYL 86



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 27/157 (17%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211
           L  LY +W++K  H   F+  D    EEE++++F                  H  +GK  
Sbjct: 149 LDELY-EWLEKFLH-EEFLIPD----EEENLEDFLE----------------HYEEGKEF 186

Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E+ +N  ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++
Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIE 246

Query: 271 ISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLL 305
             DTAGIR+   I  +E+  + RT   + ++ + LL+
Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALLV 283


>gi|122702429|emb|CAL88405.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  G TRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGATRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122702513|emb|CAL88447.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L ++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLVRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|86151224|ref|ZP_01069439.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86153811|ref|ZP_01072014.1| GTP-binding protein engA [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612239|ref|YP_001000097.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005055|ref|ZP_02270813.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|315123946|ref|YP_004065950.1| GTPase family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|166224324|sp|A1VYA6|DER_CAMJJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|85841571|gb|EAQ58818.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85842772|gb|EAQ59984.1| GTP-binding protein engA [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87250505|gb|EAQ73463.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|315017668|gb|ADT65761.1| GTPase family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 460

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD     + +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305
           ++   + +K+  L+V + +D+IL L
Sbjct: 64  ELF--KNVKKNTLKVAKESDIILYL 86



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 27/157 (17%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211
           L  LY +W++K  H   F+  D    EEE++++F                  H  +GK  
Sbjct: 149 LDELY-EWLEKFLH-EEFLIPD----EEENLEDFLE----------------HYEEGKEF 186

Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E+ +N  ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++
Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIE 246

Query: 271 ISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLL 305
             DTAGIR+   I  +E+  + RT   + ++ + LL+
Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALLV 283


>gi|332300532|ref|YP_004442453.1| GTP-binding protein engA [Porphyromonas asaccharolytica DSM 20707]
 gi|332177595|gb|AEE13285.1| GTP-binding protein engA [Porphyromonas asaccharolytica DSM 20707]
          Length = 436

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIVT+  GTTRD     +        I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTRSRQAIVTEEAGTTRDRQYGHVTWCERTFSIVDTGGWVLRS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF---PKNIDFIFIGTKSDLY 332
           DD+ E+E  K+  + VE ADLIL + +I     +   EI+      N   I +  K+D +
Sbjct: 65  DDVFEEEINKQVRIAVEEADLILFVVDILNGVTDLDDEIALMLRQTNKPVILVANKADNF 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + + +  +         + IS+  G    +L++ I  +L  +    P 
Sbjct: 125 TQHNDAAEFYTLGIGDPYPISAINGSSTGDLLDHILELLPKEGNHEPL 172



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  I+G  NAGKSSL NAL  ++  IVTD  GTTRD +  + D       + DTAGIR+ 
Sbjct: 177 RFAIVGRPNAGKSSLLNALIGEERNIVTDRSGTTRDSIFAEYDKFNQHFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    +ENAD+ ++L
Sbjct: 237 GKVNEDLEYYSVIRAIRAIENADVCIML 264


>gi|313886089|ref|ZP_07819824.1| ribosome biogenesis GTPase Der [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924435|gb|EFR35209.1| ribosome biogenesis GTPase Der [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 436

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIVT+  GTTRD     +        I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTRSRQAIVTEEAGTTRDRQYGHVTWCERTFSIVDTGGWVLRS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF---PKNIDFIFIGTKSDLY 332
           DD+ E+E  K+  + VE ADLIL + +I     +   EI+      N   I +  K+D +
Sbjct: 65  DDVFEEEINKQVRIAVEEADLILFVVDILNGVTDLDDEIALMLRQTNKPVILVANKADNF 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + + +  +         + IS+  G    +L++ I  +L  +    P 
Sbjct: 125 TQHNDAAEFYSLGIGDPYPISAINGSSTGDLLDHILELLPKEGNHEPL 172



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  I+G  NAGKSSL NAL  ++  IVTD  GTTRD +  + D       + DTAGIR+ 
Sbjct: 177 RFAIVGRPNAGKSSLLNALIGEERNIVTDRSGTTRDSIFAEYDKFNQHFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    +ENAD+ ++L
Sbjct: 237 GKVNEDLEYYSVIRAIRAIENADVCIML 264


>gi|256425494|ref|YP_003126147.1| small GTP-binding protein [Chitinophaga pinensis DSM 2588]
 gi|256040402|gb|ACU63946.1| small GTP-binding protein [Chitinophaga pinensis DSM 2588]
          Length = 441

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G+ + I+G  N GKS+LFN L ++  AIV D+ G TRD      D  G    + DT G +
Sbjct: 3   GFTVAIVGRPNVGKSTLFNRLLEQRKAIVDDVSGVTRDRQYGVADWNGKSFNVIDTGGFV 62

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             ++D+ E+E  K+  + +E A+L+L + ++ +
Sbjct: 63  SRSEDVFEREIRKQVKIAMEEANLLLFMCDVAT 95



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSL NAL  ++  IV+DIPGTTRD +     +      + DTAG+R  
Sbjct: 182 KIAIIGQPNVGKSSLLNALIGEERNIVSDIPGTTRDTIHTHYKMFQKDFVLIDTAGLRRK 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R    ++ AD+ LLL
Sbjct: 242 NKVQEDLEFYSVIRAIKAMDEADVCLLL 269


>gi|206901733|ref|YP_002250881.1| ribosome-associated GTPase EngA [Dictyoglomus thermophilum H-6-12]
 gi|206740836|gb|ACI19894.1| ribosome-associated GTPase EngA [Dictyoglomus thermophilum H-6-12]
          Length = 380

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +   +G  N+GKSSL NAL  KD +IV++IPGTTRD + +  +  G    I DT G+R  
Sbjct: 123 RFAFVGRPNSGKSSLLNALIGKDRSIVSEIPGTTRDAVDLVWEFNGKKYIIVDTPGLRRP 182

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E+  +++T   +   D+ +++
Sbjct: 183 ARVEEGLEELSVRKTLQTIRKIDVAVMV 210


>gi|22298365|ref|NP_681612.1| hypothetical protein tlr0823 [Thermosynechococcus elongatus BP-1]
 gi|22294544|dbj|BAC08374.1| tlr0823 [Thermosynechococcus elongatus BP-1]
          Length = 358

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 13/144 (9%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++ + IV+LG    GKS+L NAL  + +  V  I GTT+   T+    +  +V ++DT G
Sbjct: 44  QSAWHIVVLGQVGRGKSALLNALYGEAIFPVGAIHGTTQWPRTVRWHCQDQIVDLTDTPG 103

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK-------EINSKKEISFPKNIDFIFIGTKS 329
           +   D++   +    T+  +E ADL+L +        E  ++  +   + I    I TK+
Sbjct: 104 L---DEVAGSDRETMTWSVLETADLVLFVTQDSLTPVECQARDRLHTLR-IPHKLILTKA 159

Query: 330 DLYSTYTEEYDHLISSFTGEGLEE 353
           DLY    E     +SS TG+G+ E
Sbjct: 160 DLYPPMAEGIA--VSSTTGQGIPE 181


>gi|332527857|ref|ZP_08403894.1| GTP-binding protein Der [Rubrivivax benzoatilyticus JA2]
 gi|332112434|gb|EGJ12227.1| GTP-binding protein Der [Rubrivivax benzoatilyticus JA2]
          Length = 447

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ + G  N GKS+L NA   ++  +  D PGTTRD + + L+ EG   ++ DTAG+R  
Sbjct: 182 RLAVAGRPNVGKSTLINAWLGEERLVAFDQPGTTRDAIKVSLEREGRRFELIDTAGLRRK 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   + +A++++L+
Sbjct: 242 GKVFEAIEKFSVVKTLQAIADANVVVLM 269



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN + K   AIV D  G TRD    D  L G    + DT G   E 
Sbjct: 5   IALVGRPNVGKSTLFNRITKSRDAIVADFAGLTRDRHYGDARLGGREFIVVDTGGFEPEK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
              V  E  K+T   V  AD+++ + ++ +
Sbjct: 65  PSGVVAEMAKQTRQAVAEADVVVFVADLRA 94


>gi|297181616|gb|ADI17800.1| predicted GTPases [uncultured Sphingobacteriales bacterium
           HF0130_33B19]
          Length = 434

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  I+G  N GKSS+ N L  K+  IVTDI GTTRD L I     G+   + DTAG+R+ 
Sbjct: 176 KFAIIGRPNVGKSSIINTLIGKEQNIVTDIAGTTRDSLNIRYTQFGFDFSLVDTAGVRKK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLIL 303
            ++   +E   + R+   +E++D+ +
Sbjct: 236 KNVHENLEFYSVMRSIRAIEHSDVCI 261



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS++FN   +   AI  ++ G TRD      +  G    + DT G I+ +
Sbjct: 5   VAIVGRPNVGKSTIFNRFTESRQAITDEVSGVTRDRHYGKAEWNGREFSVIDTGGYIKGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD+ E E  K+  L +E A++IL L ++ +
Sbjct: 65  DDVFEVEIRKQVELAIEEANVILFLVDVKA 94


>gi|42560947|ref|NP_975398.1| GTP-binding protein EngA [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|81829393|sp|Q6MTJ6|DER_MYCMS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|42492444|emb|CAE77040.1| conserved GTPase of unknown function [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301321230|gb|ADK69873.1| ribosome-associated GTPase EngA [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 435

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSL N+L  ++  IV++I GTT D + I          + DTAGIR+ 
Sbjct: 176 KIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDISFSYNKNKYTVIDTAGIRKK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   VEK    R+   + N+D++LL+  I++ K I+
Sbjct: 236 SKLGQTVEKYSYLRSLSAITNSDIVLLM--IDATKPIT 271



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN + K+  +IV + PG TRD +  + +       + DT GI    
Sbjct: 6   VAIIGRPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSNAEWLTREFILVDTGGISIDQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            +   E   +T + +E AD+I+ +
Sbjct: 66  QLFSNEIQIQTQIAIEQADVIIFV 89


>gi|322381805|ref|ZP_08055759.1| EngA-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154193|gb|EFX46515.1| EngA-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 443

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL NA+  ++  IV+D  GTTRD +    + +G    I DTAG+R+ 
Sbjct: 181 RVALIGRPNVGKSSLVNAILGEERVIVSDQAGTTRDAIDTPFEKDGQKYVIIDTAGMRKR 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E AD++L++
Sbjct: 241 GKVYENTEKYSVMRALKAIERADVVLVV 268



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS++FN +    +AIV D PG TRD L    +       I DT GI  + 
Sbjct: 9   IAIVGRPNVGKSTIFNKIIGDRLAIVEDRPGVTRDRLYGIGEWMNREFSIIDTGGIEIDG 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           +D + K    +  L +E +D+I+ + +  S
Sbjct: 69  EDHIMKSVKVQAELAIEESDVIIFMVDAKS 98


>gi|86134521|ref|ZP_01053103.1| GTP-binding protein EngA [Polaribacter sp. MED152]
 gi|85821384|gb|EAQ42531.1| GTP-binding protein EngA [Polaribacter sp. MED152]
          Length = 436

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 178 RFAVVGRPNAGKSSFINALIGEDRNIVTNIAGTTRDSIDTKYNRFGFDFNLVDTAGIRKK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    +E +D+I+L+
Sbjct: 238 SRVKEDLEFYSVMRAVRSIEYSDVIILV 265



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L ++  AIV  + G TRD      D  G    + DT G    +
Sbjct: 5   IAIVGRPNVGKSTLFNRLVQRREAIVDSVSGVTRDRHYGKSDWNGKEFSVIDTGGYAIGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           DDI E+E  K+  L ++ ADLI+ + ++
Sbjct: 65  DDIFEEEIRKQVKLAIDEADLIVFVVDV 92


>gi|94970562|ref|YP_592610.1| GTP-binding protein Era [Candidatus Koribacter versatilis Ellin345]
 gi|94552612|gb|ABF42536.1| GTP-binding protein Era [Candidatus Koribacter versatilis Ellin345]
          Length = 324

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 59/99 (59%), Gaps = 4/99 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDT 274
           R+G+ + I+G  NAGKS+L NAL  + +AIVT  P TTR+ +   + +  +G +V + DT
Sbjct: 4   RSGF-VSIIGRPNAGKSTLLNALVGEKIAIVTHKPQTTRNRIQGIVTVPKKGQIV-LVDT 61

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            G+ + D  + K  ++  +  +E  DL+L + ++  K E
Sbjct: 62  PGVHKPDKTLNKRMMQEVYDALEGCDLLLYIHDVTHKFE 100


>gi|329120372|ref|ZP_08249039.1| ribosome-associated GTPase EngA [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462327|gb|EGF08653.1| ribosome-associated GTPase EngA [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 490

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE +++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEASNVAVLV--LDAQQDIA 272



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       L      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSKDALVHDLPGLTRDRHYGHGRLGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|255321133|ref|ZP_05362299.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens SK82]
 gi|262380178|ref|ZP_06073333.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens
           SH164]
 gi|255301687|gb|EET80938.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens SK82]
 gi|262298372|gb|EEY86286.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens
           SH164]
          Length = 469

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G ++ I+G  N GKS+L N L  ++  +  D PGTTRD + I  + +G    + DTAG+
Sbjct: 175 TGLRLAIIGRPNVGKSTLVNRLLGEERVVAYDEPGTTRDSVYIPFERDGRQYTLIDTAGV 234

Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305
           R   + D+++EK  + +T   +++A +++++
Sbjct: 235 RRKGKVDEMIEKFSVVKTLQAMKDAHVVVVV 265



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E++
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFIVVDTGGIGESE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++    +++   +  ADLI+ +
Sbjct: 65  QGIDSYMAEQSKTAIHEADLIIFV 88


>gi|308389025|gb|ADO31345.1| putative GTP-binding protein EngA [Neisseria meningitidis alpha710]
          Length = 485

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + +G    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFERKGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|241205814|ref|YP_002976910.1| GTP-binding protein EngA [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859704|gb|ACS57371.1| small GTP-binding protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 474

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLLKEINS 310
            D + ++     +T   ++ ADL L + +  S
Sbjct: 63  ADAESLQGRMRAQTEAAIDEADLSLFVVDAKS 94



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R  
Sbjct: 205 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 264

Query: 281 DDIVEK 286
             ++EK
Sbjct: 265 ARVIEK 270


>gi|162454229|ref|YP_001616596.1| GTP-binding protein [Sorangium cellulosum 'So ce 56']
 gi|161164811|emb|CAN96116.1| GTP-binding protein [Sorangium cellulosum 'So ce 56']
          Length = 598

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L  K VAIV D PG TRD    D+   G    + DT G     
Sbjct: 161 VALVGRPNTGKSTLFNRLVGKRVAIVHDEPGVTRDRHYGDVTSRGRRFTLVDTGGFDPES 220

Query: 282 DIVEKEGIKRTF-LEVENADLILLL 305
           D   ++GIKR   L +  AD+I+ +
Sbjct: 221 DDPMRQGIKRQIDLAIAEADVIVCV 245



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I I+G  NAGKSSL N +A ++  +V   PGTTRD +    + +G    + DTAGIR  
Sbjct: 335 RIAIIGRPNAGKSSLVNRIAGEERMLVDATPGTTRDPIDTLAERDGKRFLLIDTAGIRRK 394

Query: 279 ----ETDDIVEKEGIKRTFLEVENADLILLL 305
               + D  VE   +      +E A+++LLL
Sbjct: 395 SKVAKEDSAVEAVSVIHAIRAMERAEVVLLL 425


>gi|153005016|ref|YP_001379341.1| GTP-binding protein EngA [Anaeromyxobacter sp. Fw109-5]
 gi|152028589|gb|ABS26357.1| small GTP-binding protein [Anaeromyxobacter sp. Fw109-5]
          Length = 471

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN LA +  AIV D+PG TRD    D   +G  + + DT G   E+
Sbjct: 13  VALVGRPNVGKSTLFNRLAGRRAAIVQDVPGVTRDRNYADFSFDGRALSVVDTGGFEPES 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D +  +  ++  L VE A  ++L+
Sbjct: 73  RDRLMSQVRQQAQLAVEEAAAVVLV 97



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKS+  N+L   +  +V+D+PGTTRD +   ++  G    ++DTAGIR  
Sbjct: 202 RLAIVGRPNVGKSTFVNSLLGHERFVVSDVPGTTRDAIDSLVEQRGQRFVVTDTAGIRRK 261

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VE   + R+   ++ A+++  L
Sbjct: 262 SAIAQAVEAYSVVRSMKAIDRAEVVACL 289


>gi|315926702|gb|EFV06081.1| small GTP-binding domain protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 460

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD     + +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305
           ++   + +K+  L+V + +D+IL L
Sbjct: 64  ELF--KNVKKNTLKVAKESDIILYL 86



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 27/157 (17%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211
           L  LY +W++K  H   F+  D    EEE++++F                  H  +GK  
Sbjct: 149 LDELY-EWLEKFLH-EEFLIPD----EEENLEDFLE----------------HYEEGKEF 186

Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E+ +N  ++ I+G  N GKSSL N L K++ ++V+ I GTT D +   +  +  +++
Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNTLVKQERSVVSSIAGTTIDPVNESIVYKDKVIE 246

Query: 271 ISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLL 305
             DTAGIR+   I  +E+  + RT   + ++ + LL+
Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALLV 283


>gi|212638926|ref|YP_002315446.1| GTP-binding protein EngA [Anoxybacillus flavithermus WK1]
 gi|212560406|gb|ACJ33461.1| Predicted GTPase [Anoxybacillus flavithermus WK1]
          Length = 449

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 5/119 (4%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L + + +H  + +  E   +  K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +
Sbjct: 168 LLDAVVAHFPKRETKEYDADVIKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAI 227

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
                 +G    I DTAG+R+   +    EK  + R    +E +D++L++  IN+++ I
Sbjct: 228 DTTFKRDGQEYVIIDTAGMRKRGKVYESTEKYSVLRALKAIERSDVVLVV--INAEEGI 284



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +       + DT GI   D
Sbjct: 19  VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNTTFNMIDTGGIDIGD 78

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +  +  ++  + ++ AD+I+ +
Sbjct: 79  EPLLTQIRQQAEIAIDEADVIIFM 102


>gi|193215037|ref|YP_001996236.1| GTP-binding protein EngA [Chloroherpeton thalassium ATCC 35110]
 gi|238692727|sp|B3QZ96|DER_CHLT3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|193088514|gb|ACF13789.1| small GTP-binding protein [Chloroherpeton thalassium ATCC 35110]
          Length = 435

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 19/156 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  K VAIV D+PG TRD    + +  G    + DT G   T 
Sbjct: 5   VAIVGRPNVGKSTLFNRILNKRVAIVDDVPGVTRDRNFSEAEWCGKQFSLIDTGGYSRTG 64

Query: 282 DIVEKEGIKRTFLEVENADLIL------------------LLKEINSKKEISFPKN-IDF 322
           D      ++++ + ++ A++I+                  LL++  S+K +    N +D 
Sbjct: 65  DTFSAAVLEQSLIALQEANIIILVVDLRTGITDIDLEITELLRKQASEKTVFLAVNKVDN 124

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
             + + + L+        + +S+  G G+ EL++ +
Sbjct: 125 NLMESDAQLFRKLGLSEPYFVSALDGRGVAELLDAV 160



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ ++G  N GKSS  NA+  ++  IVTDIPGTTRD +       G    + DTAG+R  
Sbjct: 177 KLTVIGRPNVGKSSFVNAILGQNRQIVTDIPGTTRDAVDSRFKRNGQDFLLIDTAGLRRK 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + DD +E     RT   +E  D+ ++L
Sbjct: 237 AKVDDNIELFSALRTEKAIERCDVAIIL 264


>gi|169333658|ref|ZP_02860851.1| hypothetical protein ANASTE_00042 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259652|gb|EDS73618.1| hypothetical protein ANASTE_00042 [Anaerofustis stercorihominis DSM
           17244]
          Length = 394

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 100/195 (51%), Gaps = 30/195 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I I G  NAGKSS+ NA+  +++AIV+D+ GTT D ++  ++L   G +V I DT G+ +
Sbjct: 14  IGIFGRRNAGKSSIINAITNQNLAIVSDVKGTTTDPVSKAMELFPLGPVV-IIDTPGLDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKE---ISFPKNIDFIFIGTKSDL 331
              + EK  I++ +  +   D+ LL+ +      +  KE   +   KNI +I +  KSD+
Sbjct: 73  VGSLGEKR-IEKAYQVLNKTDIALLILDAEYGLTDVDKELLKLIKEKNIPYIILMNKSDI 131

Query: 332 YSTYTEEYDHL-ISSFTGEG---LEELINK---------IKSILSNKFKKLPFSIPSHK- 377
            S   +  + + +S+ TGE    L+ELI K         I S L NK  K+   IP  K 
Sbjct: 132 LSDDKKNNEFIYVSTKTGENIKELKELIAKKAPKGNEKVIVSDLINKGDKVILVIPIDKA 191

Query: 378 ----RHLYHLSQTVR 388
               R +    QT+R
Sbjct: 192 APKGRLILPQQQTIR 206


>gi|122702515|emb|CAL88448.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ K+         + +DLIL
Sbjct: 69  ALLSKKIKAINLKAAQMSDLIL 90


>gi|83310443|ref|YP_420707.1| GTP-binding protein EngA [Magnetospirillum magneticum AMB-1]
 gi|123542640|sp|Q2W7M7|DER_MAGSA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|82945284|dbj|BAE50148.1| GTP-binding protein engA [Magnetospirillum magneticum AMB-1]
          Length = 464

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           + + I+G  N GKS+LFN L  K +AIV D+PG TRD       L G   ++ DTAG   
Sbjct: 3   FTVAIIGRPNVGKSTLFNRLVGKRLAIVHDLPGVTRDRREGRASLLGMEFQVVDTAGFED 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +  D +E     +T + V  AD+ LLL  I+S+  ++
Sbjct: 63  DGGDSIEARMRHQTDMAVAEADVALLL--IDSRAGVT 97



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 81/180 (45%), Gaps = 29/180 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  +D  +     G TRD + ++ +  G  +K+ DTAG+R+  
Sbjct: 197 MAIVGRPNVGKSTLGNQLLGQDRLLTGPEAGLTRDAIAVEWEHRGRRMKLVDTAGLRKKA 256

Query: 282 ---DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPKNI-----DFIFIGTKSD 330
              D +EK  +  T   +  +++++L+ +   I  K++++  + +       +    K D
Sbjct: 257 QIYDAIEKLSVGNTIETIRMSEVVVLVMDAAAILDKQDLTIARLVVEEGRALVLAINKWD 316

Query: 331 LYSTYTEEYDHL------------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +          L                  +S+ TG G+E+L++ +    +   +++P +
Sbjct: 317 VVDDPQTALKRLKDRLETSLPQARGVATVTLSALTGRGIEKLMDAVLDTWTKWNRRIPTA 376


>gi|163786085|ref|ZP_02180533.1| GTP-binding protein EngA [Flavobacteriales bacterium ALC-1]
 gi|159877945|gb|EDP72001.1| GTP-binding protein EngA [Flavobacteriales bacterium ALC-1]
          Length = 434

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  ++  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDTKYNRFGFEFNLVDTAGIRRK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E+ D+ LL+
Sbjct: 236 SKVKEDLEFYSVMRSVRAIEHCDVCLLV 263



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + ++G  N GKS+ FN L K+  AIV  + G TRD      D  G    + DT G +  +
Sbjct: 5   VAVVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGKEFSLIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DDI E E  K+  L ++ AD I+ + ++ +
Sbjct: 65  DDIFEAEIDKQVELAIDEADAIIFMVDVET 94


>gi|122702181|emb|CAL88281.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L+++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  VLLSKEIKALNLKAAQMSDLIL 90


>gi|46581596|ref|YP_012404.1| GTP-binding protein EngA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81698970|sp|Q725L9|DER_DESVH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|46451019|gb|AAS97664.1| GTP-binding protein EngA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311235239|gb|ADP88093.1| ribosome-associated GTPase EngA [Desulfovibrio vulgaris RCH1]
          Length = 491

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  NAGKSSL NAL   +  IV+D+ GTTRD + +  + +G      DTAG+R  
Sbjct: 228 RLCMLGRPNAGKSSLVNALTGTNRMIVSDVAGTTRDSVDVAFEKDGLSYTFVDTAGVRRR 287

Query: 281 D---DIVEKEGIKRTFLEVENADLILLL 305
               D VE+  +  +      A + LL+
Sbjct: 288 SRITDTVERYSVNSSLKSTTKAHVTLLV 315



 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 16/74 (21%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL----------------TIDLDL 264
           KI ++G  N GKS+LFN L + + AI  D+PG TRD +                T  + L
Sbjct: 4   KIALVGRPNVGKSTLFNRLIRSNRAITHDMPGVTRDRMEGIVRGRNKRPFGIIDTGGITL 63

Query: 265 EGYLVKISDTAGIR 278
           +G+       AGIR
Sbjct: 64  DGHAAVAEGPAGIR 77


>gi|302345898|ref|YP_003814251.1| ribosome-associated GTPase EngA [Prevotella melaninogenica ATCC
           25845]
 gi|302149910|gb|ADK96172.1| ribosome-associated GTPase EngA [Prevotella melaninogenica ATCC
           25845]
          Length = 437

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +       G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 237 NKVSEDLEFYSVMRSIRSIENSDVCILM 264



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    I DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSIVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI E    K+  +  E ADL+L +
Sbjct: 65  DDIFEDAIRKQVLVATEEADLVLFV 89


>gi|227484953|ref|ZP_03915269.1| GTP-binding protein [Anaerococcus lactolyticus ATCC 51172]
 gi|227237108|gb|EEI87123.1| GTP-binding protein [Anaerococcus lactolyticus ATCC 51172]
          Length = 439

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKSSL N L  +D  IVTDI GTTRD +        +   + DTAG+R  
Sbjct: 177 RIAIIGKPNAGKSSLVNLLLNEDRMIVTDIAGTTRDAVDSYWTYNDHNYVLIDTAGLRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E    +RTF  V++A++ L L
Sbjct: 237 SKVKENIEYYANQRTFDAVDSAEICLFL 264



 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 30/165 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G +N GKS+LFN L  K  +I  D+ G TRD +    + +     + DT GI   +
Sbjct: 6   VTLVGRTNVGKSTLFNRLVGKRKSITEDVSGVTRDRIVDKAEWQNNEFLLVDTGGIDISS 65

Query: 281 DDIVEKE---GIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326
            D++  E    +++  LE    +LIL +  ++ K+ ++ P ++D            I + 
Sbjct: 66  KDMMNVEIRGQVEKALLE---TNLILFV--VDGKEGVN-PHDVDIANEIRKYNKPVIIVA 119

Query: 327 TK-------SDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSIL 362
            K        DLY  Y+  +D+L  IS+   +GL +L++ I S +
Sbjct: 120 NKVDNMQVPDDLYDFYSFGFDNLVMISAEQAKGLGDLLDAIISYI 164


>gi|227498485|ref|ZP_03928631.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903943|gb|EEH89861.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 405

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 15/154 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I + G  NAGKSSL NAL  +D++IV+D  GTT D ++  ++ L    V I+DT G+ + 
Sbjct: 16  IGLFGCRNAGKSSLINALTGQDLSIVSDFKGTTTDPVSKAMEILPLGPVLITDTPGLDDE 75

Query: 281 DDIVEKEGIKRTFLEVENADLILL-------LKEINSKKEISFP-KNIDFIFIGTKSDLY 332
             + EK  +K+    + + D+ LL       L E + +    F  + + ++ I  K D+Y
Sbjct: 76  GALGEKR-VKKARFVLRSTDIALLVVDAALGLSEADQRLLKEFKERKVPYLLIVNKIDIY 134

Query: 333 ST---YTEEYDHL--ISSFTGEGLEELINKIKSI 361
           S       E DHL  +S+ T EG+ EL  ++  +
Sbjct: 135 SAPLLPQAEKDHLLFVSAQTHEGITELKERLSRM 168


>gi|197302999|ref|ZP_03168047.1| hypothetical protein RUMLAC_01725 [Ruminococcus lactaris ATCC
           29176]
 gi|197297854|gb|EDY32406.1| hypothetical protein RUMLAC_01725 [Ruminococcus lactaris ATCC
           29176]
          Length = 442

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSS+ N L  ++  IV+DI GTTRD +  ++   G      DTAG+R  
Sbjct: 179 RVAIVGKPNVGKSSIINRLLGENRVIVSDIAGTTRDAIDTEIVHNGKEYVFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + I   +E+  I RT   VE AD++L++
Sbjct: 239 NKIKEELERYSIIRTVSAVERADVVLMV 266



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  D+D       + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADVDWLDREFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+  +  ++  + ++ AD+I+ + ++
Sbjct: 66  RDIILSQMREQAQIAIDTADVIIFITDV 93


>gi|153951852|ref|YP_001398571.1| GTP-binding protein EngA [Campylobacter jejuni subsp. doylei
           269.97]
 gi|166224323|sp|A7H4Z1|DER_CAMJD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|152939298|gb|ABS44039.1| GTPase family protein [Campylobacter jejuni subsp. doylei 269.97]
          Length = 460

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD    ++ +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNKMARQRIAITSDISGTTRDANKTEIYIHSKKAMLIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305
           ++   + +K+  L+V + +D+IL L
Sbjct: 64  ELF--KNVKKNTLKVAKESDIILYL 86



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 27/144 (18%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211
           L  LY +W++K  H + F+  D    EEE++++F                  +  +GK  
Sbjct: 149 LDELY-EWLEKFLH-QEFLIPD----EEENLEDFLE----------------YYEEGKEF 186

Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E+ +N  ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++
Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESIVHKDKVIE 246

Query: 271 ISDTAGIRETDDI--VEKEGIKRT 292
             DTAGIR+   I  +E+  + RT
Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRT 270


>gi|57237441|ref|YP_178454.1| GTP-binding protein EngA [Campylobacter jejuni RM1221]
 gi|86149131|ref|ZP_01067363.1| GTPase family protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597436|ref|ZP_01100671.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562044|ref|YP_002343823.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|26006744|sp|Q9PIB6|DER_CAMJE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|81819560|sp|Q5HW81|DER_CAMJR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|57166245|gb|AAW35024.1| GTPase family protein [Campylobacter jejuni RM1221]
 gi|85840489|gb|EAQ57746.1| GTPase family protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190497|gb|EAQ94471.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359750|emb|CAL34536.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284925657|gb|ADC28009.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315057809|gb|ADT72138.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni S3]
          Length = 460

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD     + +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305
           ++   + +K+  L+V + +D+IL L
Sbjct: 64  ELF--KNVKKNTLKVAKESDIILYL 86



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 27/157 (17%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211
           L  LY +W++K  H   F+  D    EEE++++F                  +  +GK  
Sbjct: 149 LDELY-EWLEKFLH-EEFLIPD----EEENLEDFLE----------------YYEEGKEF 186

Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E+ +N  ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++
Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIE 246

Query: 271 ISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLL 305
             DTAGIR+   I  +E+  + RT   + ++ + LL+
Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALLV 283


>gi|304315770|ref|YP_003850915.1| small GTP-binding protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777272|gb|ADL67831.1| small GTP-binding protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 411

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 35/173 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I G  NAGKSS+ NAL  +++AIV+D+ GTT D +   ++ L    V I DTAG+ +T
Sbjct: 12  IAIFGRRNAGKSSIINALTNQNIAIVSDVAGTTTDPVQKAMEILPIGPVVIIDTAGLDDT 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLL-----------KEINSK-KEISFPKNIDFIFIGTK 328
            ++ E   +K+T+  +   DL LL+           +EI  K KE    KNI  + +  K
Sbjct: 72  GELGELR-VKKTYEVLNRTDLALLIIDGTIGPSEFEEEILKKIKE----KNIPVVGVVNK 126

Query: 329 SDL----YSTYTEEYDHL------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
            DL    +S  TE    L       S+ +G G+EEL  +I        KK P+
Sbjct: 127 VDLVDFHFSKKTEWEKRLKLELVETSANSGYGIEELKRQI-------IKKAPY 172


>gi|145299527|ref|YP_001142368.1| GTP-binding protein EngA [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166224302|sp|A4SNZ8|DER_AERS4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|142852299|gb|ABO90620.1| GTP-binding protein EngA [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 499

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K  I+G  N GKS+L N +  +D  IV D+PGTTRD + + ++ +     + DTAG+R  
Sbjct: 214 KFAIVGRPNVGKSTLTNRMLGEDRVIVYDMPGTTRDSVYVPMERDEQKYVVIDTAGVRRR 273

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  + VEK  + +T   +E+A++ LL+  I++++ I+
Sbjct: 274 GKVHETVEKFSVIKTLKAIEDANVCLLV--IDAQETIT 309



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L      + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGELEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E +  +++ L +E AD++L +
Sbjct: 65  EGIELKMAEQSLLAIEEADVVLFM 88


>gi|319790369|ref|YP_004152002.1| GTP-binding proten HflX [Thermovibrio ammonificans HB-1]
 gi|317114871|gb|ADU97361.1| GTP-binding proten HflX [Thermovibrio ammonificans HB-1]
          Length = 366

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 90/182 (49%), Gaps = 39/182 (21%)

Query: 217 RNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           R G K V ++G++N GKS+L  AL +K+V  V D+P  T DV T  L L G  V ISDT 
Sbjct: 185 RRGQKTVAVVGYTNVGKSTLVRALTRKEV-FVKDMPFATLDVRTGSLYLNGETVLISDTV 243

Query: 276 GIRET--DDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI-----SFPKN 319
           G  +    ++V     + T  EV+ ADL+L++         +E+NS KE+     S+ K 
Sbjct: 244 GFIKNLPHELV--ASFRATLSEVKEADLLLVVFDASSETAEEELNSVKEVLKRLRSWDK- 300

Query: 320 IDFIFIGTKSD-LYST--------------YTEEYDH--LISSFTGEGLEELINKIKSIL 362
              IF+  K+D L S+                EE     LIS+  G GLEEL   I+  L
Sbjct: 301 -PKIFVANKTDKLVSSPQELEELKGELLLKIPEENPKLVLISAVKGWGLEELKRAIEEAL 359

Query: 363 SN 364
            +
Sbjct: 360 KS 361


>gi|190571288|ref|YP_001975646.1| GTP-binding protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018685|ref|ZP_03334493.1| GTP-binding protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357560|emb|CAQ54999.1| GTP-binding protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995636|gb|EEB56276.1| GTP-binding protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 441

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKS+  N+L  ++  IV+  PGTTRD + I  D  G L+ + DTAGIR  
Sbjct: 177 RIAIIGRPNVGKSTFLNSLLAENRLIVSSEPGTTRDSVDISYDHNGKLITLIDTAGIRRK 236

Query: 281 DDIV---EKEGIKRTFLEVENADLILLL 305
            ++V   E   ++++   ++ + +++L+
Sbjct: 237 ANVVDNLESRFVEKSIESIKRSHVVILM 264



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 28/36 (77%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           KIVI+G  NAGKS+LFN L  +  A+V+DIPG TRD
Sbjct: 3   KIVIIGLPNAGKSTLFNRLVGRKAAVVSDIPGVTRD 38


>gi|88810613|ref|ZP_01125870.1| GTP-binding protein EngA [Nitrococcus mobilis Nb-231]
 gi|88792243|gb|EAR23353.1| GTP-binding protein EngA [Nitrococcus mobilis Nb-231]
          Length = 476

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKS+L N L  ++  +V D PGTTRD + I  + +G+   + DTAG+R  
Sbjct: 184 RVAIVGRPNVGKSTLINRLLGEERVLVHDQPGTTRDSIFIPFERDGFAYTLIDTAGMRRR 243

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VEK    +T   V  A +++LL
Sbjct: 244 SRVYEAVEKFSAIKTLQAVTAAQVVILL 271



 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           IV++G  N GKS+LFN L +   A+V D P  TRD
Sbjct: 5   IVLVGRPNVGKSTLFNCLTRSRDALVADFPELTRD 39


>gi|315651881|ref|ZP_07904884.1| ribosome-associated GTPase EngA [Eubacterium saburreum DSM 3986]
 gi|315485883|gb|EFU76262.1| ribosome-associated GTPase EngA [Eubacterium saburreum DSM 3986]
          Length = 443

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 7/91 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIR 278
           + I+G  N GKS+LFNA+A + ++IV D PG TRD +  D   LD+   L+   DT GI 
Sbjct: 6   VAIIGRPNVGKSTLFNAIAGEPISIVKDTPGVTRDRIYADCTWLDMNFTLI---DTGGIE 62

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI 308
            E+ D++  +  ++  + +E AD+I+ + ++
Sbjct: 63  PESSDVILSQMREQAEIAIETADVIVFITDV 93



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 5/89 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           +I I+G  N GKSS+ N L  ++  IV+DI GTTRD + T+ ++ +   + I DTAG+R 
Sbjct: 180 RIAIVGKPNVGKSSIINRLTGQNRVIVSDIAGTTRDAIDTVVVNNKQEYIFI-DTAGLRR 238

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +   +E+  I RT   VE AD+++L+
Sbjct: 239 KSKVKEDIERYSIIRTVTAVERADVVILV 267


>gi|160872137|ref|ZP_02062269.1| GTP-binding protein EngA [Rickettsiella grylli]
 gi|159120936|gb|EDP46274.1| GTP-binding protein EngA [Rickettsiella grylli]
          Length = 455

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 5/103 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   K+ I+G  N GKS+L N +  ++  IV D PGTTRD +  D++  G      DTA
Sbjct: 194 IKPKIKVAIVGKPNVGKSTLLNRILGEERVIVFDQPGTTRDSIANDIEYRGQHYIFIDTA 253

Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           GIR   +T + ++K  + ++   +E + ++LLL  I++++ IS
Sbjct: 254 GIRRKSKTWEAIDKFSVIKSLQAIEASHVVLLL--IDAQEGIS 294



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 26/37 (70%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           IV++G  N GKSSLFN L K   A+V DIPG TRD L
Sbjct: 17  IVLVGRPNVGKSSLFNRLTKTRQALVGDIPGLTRDRL 53


>gi|281358431|ref|ZP_06244912.1| ribosome-associated GTPase EngA [Victivallis vadensis ATCC BAA-548]
 gi|281315054|gb|EFA99086.1| ribosome-associated GTPase EngA [Victivallis vadensis ATCC BAA-548]
          Length = 513

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE----GYLVKISDTAGI 277
           I ++G  N GKSSL NAL  ++  +V+D+ GTTRD + +D  L          + DTAG+
Sbjct: 200 IAVVGRPNVGKSSLVNALLGEERVMVSDVAGTTRDAIDVDFTLRYQGGDRAAVLVDTAGL 259

Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLLKE 307
           R   + D +VE   + R    ++ ADL+L + E
Sbjct: 260 RKKAKVDTVVEFFSVMRAQAAIDRADLVLFVVE 292



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G  N GKSSLFNA+  + ++IV ++PG TRD +   L       ++ DT G+
Sbjct: 17  VAIVGRPNVGKSSLFNAIVGRRLSIVHEMPGVTRDRVVAPLVRGKCRFQLIDTGGL 72


>gi|331002253|ref|ZP_08325772.1| GTP-binding protein engA [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330411347|gb|EGG90763.1| GTP-binding protein engA [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 443

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 5/93 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           +I I+G  N GKSS+ N L  ++  IV+DI GTTRD + T+ ++ +   V I DTAG+R 
Sbjct: 180 RIAIVGKPNVGKSSIINRLTGQNRVIVSDIAGTTRDAIDTVVVNNKQEYVFI-DTAGLRR 238

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEIN 309
              +   +E+  I RT   VE AD+++L+ + N
Sbjct: 239 KSKVKEDIERYSIIRTVTAVERADVVILVIDAN 271



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 7/91 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIR 278
           + I+G  N GKS+LFNA+A + ++IV D PG TRD +  D   LD+   L+   DT GI 
Sbjct: 6   VAIIGRPNVGKSTLFNAIAGEPISIVKDTPGVTRDRIYADCTWLDMNFTLI---DTGGIE 62

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI 308
            ++ DI+  +  ++  + +E AD+I+ + ++
Sbjct: 63  PDSSDIILSQMREQAEIAIETADVIVFITDV 93


>gi|297517162|ref|ZP_06935548.1| GTP-binding protein EngA [Escherichia coli OP50]
          Length = 194

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 59/93 (63%), Gaps = 5/93 (5%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDD 282
           G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R   +  D
Sbjct: 1   GRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITD 60

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            VEK  + +T   +E+A++++L+  I++++ IS
Sbjct: 61  AVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 91


>gi|241758625|ref|ZP_04756739.1| ribosome-associated GTPase EngA [Neisseria flavescens SK114]
 gi|241321136|gb|EER57332.1| ribosome-associated GTPase EngA [Neisseria flavescens SK114]
          Length = 485

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  ++ GTTRD + ID + EG    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFNMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFL 89


>gi|116253295|ref|YP_769133.1| GTP-binding protein EngA [Rhizobium leguminosarum bv. viciae 3841]
 gi|166225846|sp|Q1MDD6|DER_RHIL3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|115257943|emb|CAK09041.1| putative engA GTP-binding protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 473

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLLKEINS 310
            D + ++     +T   ++ ADL L + +  S
Sbjct: 63  ADAESLQGRMRAQTEAAIDEADLSLFVVDAKS 94



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R  
Sbjct: 204 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 263

Query: 281 DDIVEK 286
             ++EK
Sbjct: 264 ARVIEK 269


>gi|291543008|emb|CBL16118.1| ribosome-associated GTPase EngA [Ruminococcus bromii L2-63]
          Length = 440

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L  + ++IV D PG TRD +  +++  G    I DT GI  ++
Sbjct: 6   IAVVGRPNVGKSTLFNKLIGQRLSIVDDTPGVTRDRIYGEVEWCGKTAFIVDTGGIEPKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DDI+  +  ++  L ++ A++I+L+ +  S
Sbjct: 66  DDIILVQMRRQAQLAIDTANVIILVTDCKS 95



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 7/89 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK--ISDTAGIRE 279
           + ++G  NAGKSSL N +  ++  IV+DI GTTRD  TID  +E    K   +DTAG+R 
Sbjct: 180 VAVIGKPNAGKSSLVNKITNEERCIVSDIAGTTRD--TIDTLVENKYGKFNFTDTAGLRR 237

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              I   +EK  I R  + +E +D+ +++
Sbjct: 238 QSKIYDNIEKYSIIRAKMAIERSDVCVIM 266


>gi|289548228|ref|YP_003473216.1| ribosome-associated GTPase EngA [Thermocrinis albus DSM 14484]
 gi|289181845|gb|ADC89089.1| ribosome-associated GTPase EngA [Thermocrinis albus DSM 14484]
          Length = 430

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 48/85 (56%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +++I+G  N GKS+LFN L  +   IV+ IPG TRD++   +  +     ++DT GI E 
Sbjct: 3   RVLIVGRPNVGKSTLFNRLVGRRKNIVSPIPGVTRDIVEAQVQWKDRKFIVADTGGIMEK 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D + +E   +    +  AD+IL +
Sbjct: 63  GDELTREVRDKVLKAIRKADVILFV 87



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E+   G K+  +G  N GKSSL NA+  ++  +V+ + GTTRD + +  +  G    + D
Sbjct: 166 ELSYEGIKVSFVGRPNVGKSSLINAIMGEEKVLVSPVAGTTRDAVELPFEYGGERFVLVD 225

Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           TAG+R    +   VE   + R+   +E +D++ L+
Sbjct: 226 TAGMRRPSKVEYGVEFFSVGRSIKAIELSDVVCLV 260


>gi|262341130|ref|YP_003283985.1| GTP-binding protein EngA [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272467|gb|ACY40375.1| GTP-binding protein EngA [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 443

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 21/168 (12%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI- 277
            Y + I+G  N GKS+ FN L  +  AIV    G TRD +  + +  G    + DT G  
Sbjct: 2   NYTVSIVGRPNVGKSTFFNRLVGRRKAIVHITSGVTRDRIFGNSEWNGVKFSVVDTGGFS 61

Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS------------FPK 318
                +D++EKE   + F+ ++ AD+IL L +I     ++ +EI+               
Sbjct: 62  FATSENDVLEKEIKNQIFIAIKEADVILFLVDIKMGVLDTDREIAKILRKSQKITLLVVN 121

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            +D   + + +D +    E   + IS+  G G  EL++K+  I  +KF
Sbjct: 122 KVDNGILYSDTDFFHLGFENC-YYISAINGSGTGELLDKLVEIFKDKF 168



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKS+L N+   K+  IVT I GTTRD L +     GY   + DT G+R+   I
Sbjct: 186 VVGRPNVGKSTLINSFLDKNHHIVTHISGTTRDSLDVFYKKWGYECILVDTPGVRKKSKI 245

Query: 284 VEKEGIK-----RTFLEVENADLILLL 305
             +E I+     RT   +E  D+ LL+
Sbjct: 246 --RENIEFYSSIRTVRTIEYTDVCLLM 270


>gi|330936977|gb|EGH41077.1| GTP-binding protein Der [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 334

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R+   I   VEK  + +T   +++A++++ +
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 284



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD++L L
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFL 88


>gi|319789668|ref|YP_004151301.1| ribosome-associated GTPase EngA [Thermovibrio ammonificans HB-1]
 gi|317114170|gb|ADU96660.1| ribosome-associated GTPase EngA [Thermovibrio ammonificans HB-1]
          Length = 479

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L NAL  ++ AIV+DIPGTTRD +   + +        DTAGIR  
Sbjct: 223 KVAIVGRPNMGKSTLLNALVGEERAIVSDIPGTTRDAIDTYVRVGDDEFIFIDTAGIRRR 282

Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305
             I  +E     R+   ++ AD+++L+
Sbjct: 283 GKIKDIEYYSYLRSLDAIDRADVVVLM 309



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN L  + VAI+ + PG TRD +  + D++ + V + DT G+ E D
Sbjct: 7   VAIVGRPNVGKSSLFNRLLGRKVAIIDNTPGVTRDRVVQEADIDEHKVVLVDTGGVVEKD 66

Query: 282 -DIVEKEGIKRTFLEVENADLILLL 305
                KE  ++    +E AD+I+ +
Sbjct: 67  AHEFAKETTEQAKRAMEEADVIVFV 91


>gi|260893088|ref|YP_003239185.1| ribosome-associated GTPase EngA [Ammonifex degensii KC4]
 gi|260865229|gb|ACX52335.1| ribosome-associated GTPase EngA [Ammonifex degensii KC4]
          Length = 447

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +VI+G  N GKS+LFN L  K VAIV + PG TRD L  +++  G    + DT G+ E+ 
Sbjct: 6   VVIVGRPNVGKSTLFNRLVGKGVAIVEEEPGVTRDRLYREVEWCGREFVLVDTGGVVESP 65

Query: 282 DIVEKEGIKRTFLE-VENADLILLL 305
           +   +  I+R   + +E ADL+L +
Sbjct: 66  ESPLEVAIRRQVEQALEEADLVLFV 90



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 39/65 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL NAL  ++  IV+DIPGTTRD +      EG    + DTAG+R   
Sbjct: 182 VAIVGRPNVGKSSLVNALLGEERVIVSDIPGTTRDAVDTFFTWEGQPYILIDTAGLRRRS 241

Query: 282 DIVEK 286
            I E+
Sbjct: 242 RIKEE 246


>gi|55820417|ref|YP_138859.1| GTP-binding protein EngA [Streptococcus thermophilus LMG 18311]
 gi|55822299|ref|YP_140740.1| GTP-binding protein EngA [Streptococcus thermophilus CNRZ1066]
 gi|81820353|sp|Q5M1D9|DER_STRT1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|81820516|sp|Q5M5X5|DER_STRT2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|55736402|gb|AAV60044.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           thermophilus LMG 18311]
 gi|55738284|gb|AAV61925.1| GTP-binding protein, putative [Streptococcus thermophilus CNRZ1066]
          Length = 436

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + I GTTRD +  + +D EG    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +    EK  I R+   ++ +D++L++  IN+++ I                       EY
Sbjct: 239 VYENTEKYSIMRSMRAIDRSDVVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  +I
Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTI 299



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQAGIAMTEADVIVFV 89


>gi|326803715|ref|YP_004321533.1| ribosome biogenesis GTPase Der [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651282|gb|AEA01465.1| ribosome biogenesis GTPase Der [Aerococcus urinae ACS-120-V-Col10a]
          Length = 436

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 52/87 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D+PG TRD +    +  G  +++ DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGQRISIVEDVPGVTRDRVYAQGEWLGRKLRLIDTGGIEFND 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
           +   ++   +  + VE ADLI+++  +
Sbjct: 66  EPFVEQIRLQAEIAVEEADLIIMMTSV 92



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  ++  IV+DI GTTRD +           KI DTAGIR    +
Sbjct: 180 LIGRPNVGKSSLVNAILGENRVIVSDIAGTTRDAVDTYFSYNERSFKIIDTAGIRRKGRV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R+   +E A ++LL+
Sbjct: 240 SESTEKYSVMRSMSAIEQASVVLLV 264


>gi|312277722|gb|ADQ62379.1| GTP-binding protein engA [Streptococcus thermophilus ND03]
          Length = 436

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + I GTTRD +  + +D EG    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +    EK  I R+   ++ +D++L++  IN+++ I                       EY
Sbjct: 239 VYENTEKYSIMRSMRAIDRSDVVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  +I
Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTI 299



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQAGIAMTEADVIVFV 89


>gi|295398578|ref|ZP_06808610.1| ribosome-associated GTPase EngA [Aerococcus viridans ATCC 11563]
 gi|294973179|gb|EFG48974.1| ribosome-associated GTPase EngA [Aerococcus viridans ATCC 11563]
          Length = 436

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  ++  IV+++ GTTRD +    + +G + KI DTAGIR+   +
Sbjct: 180 LIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAIDTSFEDDGQVYKIIDTAGIRKRGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E A + L++
Sbjct: 240 YEATEKYSVMRAMRAIERAQVCLVV 264



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +    ++IV D PG TRD +    +  G  + + DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRVVGDRISIVQDEPGVTRDRIYAQGEWLGKQLNVIDTGGIEFND 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
                +   +  + +E AD+I+++  +
Sbjct: 66  QDFMTQIRLQAEIAMEEADVIIMMTNV 92


>gi|224370723|ref|YP_002604887.1| GTP-binding protein EngA [Desulfobacterium autotrophicum HRM2]
 gi|259645871|sp|C0QA05|DER_DESAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|223693440|gb|ACN16723.1| EngA2 [Desulfobacterium autotrophicum HRM2]
          Length = 492

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G  N GKSSL N L  K   +V+ +PGTTRD + + ++  G   ++ DTAGIR   
Sbjct: 190 IAVAGRPNVGKSSLINRLFGKSRVVVSHVPGTTRDSVDLSIERNGRRFRLIDTAGIRRKG 249

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   +EK  I ++   ++  D+ L+L
Sbjct: 250 KVRERIEKYSILKSLKSLDQCDVALIL 276



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + ++G  N GKS+LFN + +   A+V D PG TRD   +D         + DT G +   
Sbjct: 5   VALVGRPNVGKSTLFNRITRSRNALVDDFPGVTRDRHYVDAVWNERPFTLVDTGGFLLSD 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DD   +E      L +E+AD++ L+
Sbjct: 65  DDFFAREIRGHVELAIEDADIVALV 89


>gi|229829020|ref|ZP_04455089.1| hypothetical protein GCWU000342_01105 [Shuttleworthia satelles DSM
           14600]
 gi|229792183|gb|EEP28297.1| hypothetical protein GCWU000342_01105 [Shuttleworthia satelles DSM
           14600]
          Length = 441

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFNALA + ++IV D PG TRD +  D+    +   + DT GI  ++
Sbjct: 6   VAVVGRPNVGKSTLFNALAGERISIVEDTPGVTRDRIYADVSWLDHEFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
            DI+  +  ++  + ++ AD+I+ + ++  
Sbjct: 66  SDIILSQMREQAQIAIDTADVIIFMTDVRQ 95



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N L  K   IV+DI GTTRD +   +          DTAG+R  
Sbjct: 179 RIAVVGKPNVGKSSLINRLCGKQRLIVSDIAGTTRDAVDTRVRFNKKDYIFVDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  I R    VE AD+++L+
Sbjct: 239 SRIQGDIERYSIVRAVAAVEKADVVVLV 266


>gi|206895221|ref|YP_002246509.1| small GTP-binding protein domain [Coprothermobacter proteolyticus
           DSM 5265]
 gi|206737838|gb|ACI16916.1| small GTP-binding protein domain [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 424

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 19/164 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I+G  N GKSSL NA+A +D+A+V+D+PGTT D +   L+++    V + DT G+ + 
Sbjct: 18  IAIVGRRNVGKSSLINAIAGQDIALVSDVPGTTTDPVYKTLEVKPLGPVTLIDTPGLDDE 77

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKE---ISFPKN--IDFIFIGTKSDL-- 331
             + +K  E  KR   + + A  IL++ +     E   +S  +N  I F+    KSD+  
Sbjct: 78  GLLGQKRVERAKRALYKADAA--ILVVDDKPGAFEDFIVSLLRNLSIPFVIAVNKSDVTE 135

Query: 332 -YSTYTEEYDHL------ISSFTGEGLEELINKIKSILSNKFKK 368
              T  ++Y+        +++  G+ + ELI  + S+L ++ +K
Sbjct: 136 DTKTLVKDYEPFNVPVVKVAAAQGKNISELIQVLSSLLPDEEEK 179


>gi|260460374|ref|ZP_05808626.1| small GTP-binding protein [Mesorhizobium opportunistum WSM2075]
 gi|259034019|gb|EEW35278.1| small GTP-binding protein [Mesorhizobium opportunistum WSM2075]
          Length = 476

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 9/135 (6%)

Query: 154 LSSLYGQWIDKLTH--IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK 211
           +S+ +GQ +  L    I +  EA     +EED Q  ++ EVL     +  DI+   ++  
Sbjct: 144 VSAEHGQGMPDLRDAVIAALGEARAFGEDEEDDQEIATGEVL-----IGEDIADPDAEPA 198

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             +      +I ++G  NAGKS+L NAL  ++  +     G TRD +++D D  G  +K+
Sbjct: 199 YDDT--KPMRIAVVGRPNAGKSTLINALIGEERLLTGPEAGITRDSISVDWDWRGRRIKL 256

Query: 272 SDTAGIRETDDIVEK 286
            DTAG+R    I EK
Sbjct: 257 FDTAGMRRKARIHEK 271



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +K+ I+G  N GKS+LFN L  + +A+V D PG TRD       L      + DTAG
Sbjct: 3   FKVAIIGRPNVGKSTLFNRLVGRKLALVDDTPGVTRDRRVHAAKLYDLHFDVIDTAG 59


>gi|158425952|ref|YP_001527244.1| GTP-binding protein EngA [Azorhizobium caulinodans ORS 571]
 gi|172047845|sp|A8HVL5|DER_AZOC5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|158332841|dbj|BAF90326.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 453

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L     +I DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDARLGDLAFRIVDTAGLEE 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305
            D D +E     +T   + +AD +L L
Sbjct: 63  ADADSLEGRMRAQTETAIGDADALLFL 89



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 27/177 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKS+L N L  +D  +     G TRD +++++   G  +++ DTAG+R+ 
Sbjct: 188 KVAVIGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSISVEVTWNGRALEVFDTAGLRKR 247

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI-------FIG-TKS 329
              +D +EK         ++ A+++++L +     E    +  D +        +G  KS
Sbjct: 248 ARIEDKLEKLSAADALRAMKFAEVVVVLMDATKPFEEQDLRIADLVVREGRALVLGYNKS 307

Query: 330 DL-----YSTYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           DL     +S   EE DH            +S  TG GL++L+  I +  +    ++P
Sbjct: 308 DLVGPAAFSRLREEADHWLPQVKGVPIVPLSGLTGRGLDKLVEAIAATYAVWNTRIP 364


>gi|320539280|ref|ZP_08038950.1| ribosome-associated GTPase [Serratia symbiotica str. Tucson]
 gi|320030672|gb|EFW12681.1| ribosome-associated GTPase [Serratia symbiotica str. Tucson]
          Length = 495

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    I DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTQTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGGIDGHE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D VE     ++ L +E AD++L +
Sbjct: 65  DGVETRMAGQSLLAIEEADIVLFM 88



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R  
Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKH 268

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +  + VEK  + +T   +E+A+++LL+  I++++ IS
Sbjct: 269 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 304


>gi|13508214|ref|NP_110163.1| GTP-binding protein EngA [Mycoplasma pneumoniae M129]
 gi|8247924|sp|P75309|DER_MYCPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|11379528|gb|AAG34744.1|AE000034_1 GTPase [Mycoplasma pneumoniae M129]
 gi|301633464|gb|ADK87018.1| ribosome-associated GTPase EngA [Mycoplasma pneumoniae FH]
          Length = 449

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  N GKSSL N L +++  +V+D  GTTRD + I L + G    + DTAGIR  
Sbjct: 181 RFCVIGKPNVGKSSLINQLVQQNRVLVSDESGTTRDAIDIPLRVNGQNYLLIDTAGIRRK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E     +T L +  +++ILL+
Sbjct: 241 GKIAPGIEAASYGKTQLAIARSNIILLM 268



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 26/37 (70%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + + I+G  N GKSSLFN L +K  AI++D P TTRD
Sbjct: 2   FTVAIIGRPNVGKSSLFNRLIQKPYAIISDTPNTTRD 38


>gi|239907769|ref|YP_002954510.1| GTP-binding protein EngA [Desulfovibrio magneticus RS-1]
 gi|259645872|sp|C4XIQ6|DER_DESMR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|239797635|dbj|BAH76624.1| GTP-binding protein EngA [Desulfovibrio magneticus RS-1]
          Length = 444

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 11/128 (8%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++   ++ +LG  NAGKSSL NAL  +   IV+DI GTTRD + + +  +G      DT
Sbjct: 175 LVQTVLRLAVLGRPNAGKSSLINALVGESRLIVSDIAGTTRDAVDVVVHQKGKRYLFVDT 234

Query: 275 AGIRETDDI---VEKEGIKRTFLEVENADLILLLKE------INSKKEISF--PKNIDFI 323
           AG+R+   I   +E+  + +     + AD+ +++ +      +  K+ ISF   +   F+
Sbjct: 235 AGVRKRTRITDGLERYSVAKALSSAKRADVAVVVIDATGGVGVQDKRLISFLDSERKAFL 294

Query: 324 FIGTKSDL 331
               K+DL
Sbjct: 295 VAVNKTDL 302



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+LFN L +   AI  D+PG TRD L    ++EG  V + DT G+  E 
Sbjct: 5   VAIVGRPNVGKSTLFNRLTRGRRAITHDLPGVTRDRLEAPAEIEGRFVTLVDTGGMDYEA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           ++ + ++ +++    +  AD++L L
Sbjct: 65  EESLARQIVEQAEAALVTADVVLFL 89


>gi|254418441|ref|ZP_05032165.1| GTPase, putative [Brevundimonas sp. BAL3]
 gi|196184618|gb|EDX79594.1| GTPase, putative [Brevundimonas sp. BAL3]
          Length = 539

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 6/105 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           K+ I+G  N GKS+LFN L  K +A+V D PG TRD    D ++    + + DTAG  + 
Sbjct: 4   KVAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRRYADGNIGDMDLTLIDTAGYEDV 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
           TDD +E    ++T   +E+A+L++ +  +++++ ++   ++D IF
Sbjct: 64  TDDSLEARMREQTEAALEDAELVMFM--MDAREGVT---SLDRIF 103



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  NAGKS+L N L   D  +     G TRD +++D   EG  +++ DTAG+R  
Sbjct: 179 RIAVIGRPNAGKSTLINRLIGDDRLLTGPEAGITRDSISVDWTFEGKNIRLVDTAGMRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  +  T   +  A++++L+
Sbjct: 239 ARVQEKLEKLSVADTIRAITFAEVVILM 266


>gi|4467675|emb|CAB37789.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L  + V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNAHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKPAQMSDLIL 90


>gi|312110436|ref|YP_003988752.1| ribosome-associated GTPase EngA [Geobacillus sp. Y4.1MC1]
 gi|311215537|gb|ADP74141.1| ribosome-associated GTPase EngA [Geobacillus sp. Y4.1MC1]
          Length = 436

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      EG    I DTAG+R+ 
Sbjct: 177 KFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVDTTFVREGQEYVIIDTAGMRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I    EK  + R    +E +D++L++
Sbjct: 237 GKIYENTEKYSVLRALKAIERSDVVLVV 264



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHKFYLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +  +  ++  + ++ AD+I+ +
Sbjct: 66  EPLLVQIRQQAEIAIDEADVIIFM 89


>gi|256828007|ref|YP_003156735.1| small GTP-binding protein [Desulfomicrobium baculatum DSM 4028]
 gi|256577183|gb|ACU88319.1| small GTP-binding protein [Desulfomicrobium baculatum DSM 4028]
          Length = 445

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 11/128 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + G KI +LG  NAGKSS  NAL  K   +V+   GTTRD + + +   G      DTAG
Sbjct: 178 QGGLKIALLGRPNAGKSSTINALLGKKRLMVSAEAGTTRDCVDVTVQRGGKTYTFVDTAG 237

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEI------NSKKEISF--PKNIDFIFI 325
           +R    ++   E   +  +    + AD+++L+ +I        K+ +SF   + + F+ +
Sbjct: 238 VRRKSKVIDSLEYFSVVHSMQAAKQADVVVLVLDIMDGVVGQDKRLLSFLDTEKVPFVIV 297

Query: 326 GTKSDLYS 333
             K DL S
Sbjct: 298 VNKIDLLS 305



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + ++G  N GKS+LFN L K+ V+I  D+ G TRD +  ++  E     + DT G + ++
Sbjct: 8   VALIGRPNVGKSTLFNRLIKRRVSITHDMAGVTRDSIFSEVRGETRTYMLIDTGGLVPDS 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D +E     +    +  ADLIL +
Sbjct: 68  SDEIEISIFDQAREAMAGADLILFI 92


>gi|18075567|emb|CAD11179.1| GTP-binding protein [Helicobacter pylori]
 gi|18075569|emb|CAD11180.1| GTP-binding protein [Helicobacter pylori]
 gi|122702793|emb|CAL88586.1| GTPase [Helicobacter pylori]
 gi|122702813|emb|CAL88596.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSL N LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLLNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|88799909|ref|ZP_01115481.1| predicted GTPase [Reinekea sp. MED297]
 gi|88777340|gb|EAR08543.1| predicted GTPase [Reinekea sp. MED297]
          Length = 458

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKS+L N +  +D  +V D PGTT D + I  +  G    + DTAG+R  
Sbjct: 178 RLAIIGRPNVGKSTLVNRMLGEDRVVVYDHPGTTMDSIYIPYERHGKAYTLIDTAGVRRR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
            +I   VEK  I +T   +++A++++L+
Sbjct: 238 KNITEAVEKFSIVKTLQAIQDANVVVLV 265



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN   +   A+V D  G TRD    D  L      + DT G+   +
Sbjct: 5   IALVGRPNVGKSTLFNRFTRTRDALVADWSGLTRDRKYGDGKLGERPFIVIDTGGVSGFE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +++   +++F  ++ AD +L L
Sbjct: 65  EGLDEAMARQSFAAIDEADAVLFL 88


>gi|291563224|emb|CBL42040.1| ribosome-associated GTPase EngA [butyrate-producing bacterium
           SS3/4]
          Length = 441

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKSS+ N L  ++  IV++I GTTRD +  ++   G      DTAG+R  
Sbjct: 179 RIAIVGKPNVGKSSIINKLLGENRVIVSNIAGTTRDAVDTEIVRNGTEYIFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  I RT   VE AD++L++
Sbjct: 239 SKIKEDIERYSIIRTVTAVERADVVLMV 266



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA   ++IV D PG TRD +  D         + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGSTISIVKDTPGVTRDRIYADCTWLNNNFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+  +  ++  + ++ AD+I+ + ++
Sbjct: 66  KDIILAQMREQAQIAIDTADVIIFIVDV 93


>gi|330752119|emb|CBL87080.1| GTP-binding protein [uncultured Flavobacteria bacterium]
          Length = 434

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  N+L  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINSLIGEDRYIVTDIAGTTRDSIDTRYNRFGFEFNLIDTAGIRRK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E+ D+ +L+
Sbjct: 236 AKVKEDIEFYSVMRSVRAIEHCDVCILV 263



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN + +K  AIV  + G TRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRMIQKREAIVDAVSGVTRDRHYGKTDWNGRDFSLIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD+ EKE  K+  L +E AD I+ + E+ +
Sbjct: 65  DDVFEKEIDKQVELAIEEADAIIFMVEVET 94


>gi|15606936|ref|NP_214317.1| GTP binding protein Era [Aquifex aeolicus VF5]
 gi|8134426|sp|O67749|DER_AQUAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|2984183|gb|AAC07715.1| GTP binding protein Era [Aquifex aeolicus VF5]
          Length = 433

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE 279
           ++VI+G  N GKS+LFN +  K  AIV D PG TRD +    +  G    I DT G + E
Sbjct: 4   RVVIIGRPNVGKSTLFNRIIGKRYAIVEDYPGVTRDKIEAKAEWAGKEFIIVDTGGLVPE 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           T D + +E  K    E+  AD+IL +
Sbjct: 64  TKDELIREVKKVVEQEIPKADVILFV 89



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 26/176 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G K+  +G  N GKSSL NA+ K +  IV+ I GTTRD + I    +     + DTAG+R
Sbjct: 174 GIKVAFIGRPNVGKSSLVNAILKDERVIVSPIAGTTRDAIEIPFRWKDKNFILIDTAGVR 233

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNID-----FIFIGT 327
              ++   +E   + R+   ++ AD+  L+    E  ++++      I+      + +  
Sbjct: 234 RPSNVEYGIEFYSVGRSLKAIDLADVCCLVIDASEGPTRQDKRLGGLIERRYKGCVIVAN 293

Query: 328 KSDLYSTYTEEYDHLISS-----------FT----GEGLEELINKIKSILSNKFKK 368
           K D+     EE + +I             FT    G+G+EEL+N I  +  +  K+
Sbjct: 294 KMDISPWSEEELEGIIRKELFFLDFAPIVFTVATKGKGVEELLNWIDVVYKDYTKQ 349


>gi|84517346|ref|ZP_01004700.1| GTP-binding protein EngA [Loktanella vestfoldensis SKA53]
 gi|84508826|gb|EAQ05289.1| GTP-binding protein EngA [Loktanella vestfoldensis SKA53]
          Length = 485

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 18/160 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + D+AG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEGRLADLRFTVIDSAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD ++    + T   VE AD+ L + +  +          +I   KN + I    K +
Sbjct: 63  ATDDSLQGRMRRLTERAVEMADVCLFMIDARAGVLPADQVFADILRKKNANVILAANKGE 122

Query: 331 LYS---TYTEEY------DHLISSFTGEGLEELINKIKSI 361
             +   T  E Y         IS+  GEG+ EL++ ++ I
Sbjct: 123 GRAADNTILEAYALGLGEPIRISAEHGEGMGELMDVLRPI 162



 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGYLVKISDTA 275
           +I ++G  NAGKS+L N +  ++  +     G TRD +++       D  G  ++I DTA
Sbjct: 199 QIAVVGRPNAGKSTLINKIIGEERLLTGPEAGITRDAISVKQVWAGPDGIGVPMRIFDTA 258

Query: 276 GIRETDDIVEK 286
           G+R    I EK
Sbjct: 259 GMRRKAKIHEK 269


>gi|58696986|ref|ZP_00372467.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila simulans]
 gi|58698319|ref|ZP_00373236.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535192|gb|EAL59274.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58536766|gb|EAL60014.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila simulans]
          Length = 399

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKS+  N L  ++  I +  PGTTRD + I  D +G L+ + DTAGIR  
Sbjct: 135 RIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRK 194

Query: 281 DDIVEKEGIKRTFLE 295
            ++V  +G++  F+E
Sbjct: 195 ANVV--DGLESRFVE 207


>gi|77463250|ref|YP_352754.1| GTP-binding protein EngA [Rhodobacter sphaeroides 2.4.1]
 gi|126462124|ref|YP_001043238.1| GTP-binding protein EngA [Rhodobacter sphaeroides ATCC 17029]
 gi|221639113|ref|YP_002525375.1| GTP-binding protein EngA [Rhodobacter sphaeroides KD131]
 gi|332558128|ref|ZP_08412450.1| GTP-binding protein Der [Rhodobacter sphaeroides WS8N]
 gi|123592083|sp|Q3J2Y1|DER_RHOS4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225847|sp|A3PJF0|DER_RHOS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783164|sp|B9KRT2|DER_RHOSK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|77387668|gb|ABA78853.1| Probable GTP-binding protein [Rhodobacter sphaeroides 2.4.1]
 gi|126103788|gb|ABN76466.1| small GTP-binding protein [Rhodobacter sphaeroides ATCC 17029]
 gi|221159894|gb|ACM00874.1| GTP-binding protein engA [Rhodobacter sphaeroides KD131]
 gi|332275840|gb|EGJ21155.1| GTP-binding protein Der [Rhodobacter sphaeroides WS8N]
          Length = 487

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   D  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGDARLIDLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TDD ++    + T   VE AD+ L L
Sbjct: 63  VTDDSLQGRMRRLTERAVEMADVCLFL 89



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 33/146 (22%)

Query: 154 LSSLYGQWIDKLTHI----------RSFIEA---DLDFSEEEDVQNFSSKEVLNDILFLK 200
           LS+ +G+ +D L HI          R+  +A   D+D  EEE                L+
Sbjct: 144 LSAEHGEGMDDLYHILRPIAEGFAERAAADAPVVDVDVPEEE--------------ADLE 189

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            D  +H         +++  +I ++G  NAGKS+L N +  +D  +     G TRD +++
Sbjct: 190 ADPEAHKP------TVKHPLQIAVIGRPNAGKSTLINKIIGEDRLLTGPEAGITRDAISV 243

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEK 286
             +  G  ++I DTAG+R+   I +K
Sbjct: 244 RSEWHGTPIRIFDTAGMRKKARISDK 269


>gi|42520904|ref|NP_966819.1| GTP-binding protein EngA [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410645|gb|AAS14753.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 441

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKS+  N L  ++  I +  PGTTRD + I  D +G L+ + DTAGIR  
Sbjct: 177 RIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRK 236

Query: 281 DDIVEKEGIKRTFLE 295
            ++V  +G++  F+E
Sbjct: 237 ANVV--DGLESRFVE 249



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 27/36 (75%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           KI I+G  NAGKS+LFN L  +  A+V++IPG TRD
Sbjct: 3   KIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRD 38


>gi|332140453|ref|YP_004426191.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype']
 gi|332141960|ref|YP_004427698.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype']
 gi|238693251|sp|B4RV85|DER_ALTMD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|327550475|gb|AEA97193.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551982|gb|AEA98700.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype']
          Length = 481

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 195 KLAIVGKPNVGKSTLTNRILGEERVVVYDMPGTTRDSVYIPMERDEREYILIDTAGVRKR 254

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VEK  I +T   +E A+++LL+
Sbjct: 255 KKISEAVEKFSIVKTLQAIEEANVVLLV 282



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD        E     + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTNTRDALVADYPGLTRDRKYGQAKFEKRQFIVVDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++ E  +++ L +E AD++L L
Sbjct: 65  EGIDAEMAQQSLLAIEEADVVLFL 88


>gi|146278196|ref|YP_001168355.1| GTP-binding protein EngA [Rhodobacter sphaeroides ATCC 17025]
 gi|166225848|sp|A4WUI6|DER_RHOS5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145556437|gb|ABP71050.1| small GTP-binding protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 487

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   D  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGDARLIDLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TDD ++    + T   VE AD+ L L
Sbjct: 63  VTDDSLQGRMRRLTERAVEMADVCLFL 89



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 33/147 (22%)

Query: 153 ELSSLYGQWIDKLTHI----------RSFIEA---DLDFSEEEDVQNFSSKEVLNDILFL 199
            LS+ +G+ +D L HI          R+  +A   D+D SEEE                L
Sbjct: 143 RLSAEHGEGMDDLYHILRPIAEGFAERAAADAPVVDVDVSEEE--------------ADL 188

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           + D  +H         ++   +I ++G  NAGKS+L N +  +D  +     G TRD ++
Sbjct: 189 EADPDAHKP------TVKRPLQIAVIGRPNAGKSTLINKIIGEDRLLTGPEAGITRDAIS 242

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEK 286
           +  + +G  ++I DTAG+R+   I +K
Sbjct: 243 VRSEWQGTPIRIFDTAGMRKKARISDK 269


>gi|295398957|ref|ZP_06808939.1| ribosome-associated GTPase EngA [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978423|gb|EFG54019.1| ribosome-associated GTPase EngA [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 436

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      EG    I DTAG+R+ 
Sbjct: 177 KFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVDTTFVREGQEYVIIDTAGMRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I    EK  + R    +E +D++L++
Sbjct: 237 GKIYENTEKYSVLRALKAIERSDVVLVV 264



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHKFYLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +  +  ++  + ++ AD+I+ +
Sbjct: 66  EPLLVQIRQQAEIAIDEADVIIFM 89


>gi|225631062|ref|ZP_03787800.1| GTP-binding protein [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591242|gb|EEH12386.1| GTP-binding protein [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 441

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKS+  N L  ++  I +  PGTTRD + I  D +G L+ + DTAGIR  
Sbjct: 177 RIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRK 236

Query: 281 DDIVEKEGIKRTFLE 295
            ++V  +G++  F+E
Sbjct: 237 ANVV--DGLESRFVE 249



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 27/36 (75%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           KI I+G  NAGKS+LFN L  +  A+V++IPG TRD
Sbjct: 3   KIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRD 38


>gi|239827511|ref|YP_002950135.1| GTP-binding protein EngA [Geobacillus sp. WCH70]
 gi|259645879|sp|C5D3F4|DER_GEOSW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|239807804|gb|ACS24869.1| small GTP-binding protein [Geobacillus sp. WCH70]
          Length = 436

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      EG    I DTAG+R+ 
Sbjct: 177 KFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVDTTFVREGQEYVIIDTAGMRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I    EK  + R    +E +D++L++
Sbjct: 237 GKIYESTEKYSVLRALKAIERSDVVLVV 264



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHKFYLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +  +  ++  + ++ AD+I+ +
Sbjct: 66  EPLLVQIRQQAEIAIDEADVIIFM 89


>gi|148244763|ref|YP_001219457.1| Era/TrmE family GTP-binding protein [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326590|dbj|BAF61733.1| GTP-binding protein, Era/TrmE family [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 465

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E +  G  I +LG  N GKS+L N + ++   I  D+PGTTRD + I  + +G    +
Sbjct: 170 VNEEVVEGITIAVLGKPNVGKSTLINHILREKRVIAIDLPGTTRDSIYIPFERKGQQYTL 229

Query: 272 SDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLL 305
            DTAGIR    T + +E   I +T   +E A +++L+
Sbjct: 230 IDTAGIRRKNSTHEKIEIFSIIKTINALERAHVVILV 266



 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 33/161 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276
           I ++G  N GKS+LFN L+    A+V+D  G TRD     VL  D D + +   I DT G
Sbjct: 6   ICLIGRPNVGKSTLFNRLSHSRQALVSDFAGLTRDRQYAKVLLND-DTQTF-TTIIDTGG 63

Query: 277 IRETDDIVEKEGIKRTFLE-VENADLILLLKEINSKKEI------------SFPKNIDFI 323
                ++V+  GI+   L  +E +D+I  +  +NS+  +               KNI  I
Sbjct: 64  FTNKVNLVD-SGIQDQILSALEESDVIYFI--LNSRDGVISLDLEIASHLRRLKKNI--I 118

Query: 324 FIGTKSD-LYSTYTEEYDH-------LISSFTGEGLEELIN 356
            +  K++ L  T T E+         LIS+  G+G++ LIN
Sbjct: 119 LVCNKAEGLNPTLTTEFFELGLGKPILISAEHGQGIDNLIN 159


>gi|91788466|ref|YP_549418.1| GTP-binding protein EngA [Polaromonas sp. JS666]
 gi|123355649|sp|Q12AC2|DER_POLSJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|91697691|gb|ABE44520.1| Small GTP-binding protein domain [Polaromonas sp. JS666]
          Length = 447

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG+R  
Sbjct: 181 RLAVAGRPNVGKSTLINTWLGEERLVSFDLPGTTRDAISVPFERAGQKFELIDTAGLRRK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +E A+++LLL
Sbjct: 241 GKVFEAIEKFSVVKTLQAIEGANVVLLL 268



 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L K   AIV D  G TRD    +  L  +   + DT G  E D
Sbjct: 5   IALVGRPNVGKSTIFNRLTKTRDAIVADFAGLTRDRHYGNGKLGSHEYIVIDTGGF-EPD 63

Query: 282 DI--VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               + KE  K+T   V  AD+++ +  ++++  IS
Sbjct: 64  AASGIYKEMAKQTRQAVAEADVVIFV--VDARAGIS 97


>gi|323143788|ref|ZP_08078456.1| ribosome biogenesis GTPase Der [Succinatimonas hippei YIT 12066]
 gi|322416501|gb|EFY07167.1| ribosome biogenesis GTPase Der [Succinatimonas hippei YIT 12066]
          Length = 568

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKS+L N L  +D  +V D+PGTTRD + I L+ E     + DTAG+R+ 
Sbjct: 242 KFALVGKPNVGKSTLTNRLLGEDRVVVCDMPGTTRDSIYIPLEREHKKYIVIDTAGVRKR 301

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   +EK  I +T   +E+ ++ +L+  I++++ I+
Sbjct: 302 RKVSEAIEKFSIVKTLKAIEDCNVAVLV--IDARENIT 337



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + ++G  N GKS+LFN L K   A+V D PG TRD        +G    + DT GI    
Sbjct: 4   VALVGCPNVGKSTLFNRLTKTRDALVADFPGLTRDRKYGRALFDGREYIVIDTGGIAKDA 63

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305
            +  D+  K   ++  L +E  DL+L +
Sbjct: 64  EQPSDLTSKM-TEQALLAIEECDLVLFM 90


>gi|283955141|ref|ZP_06372643.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 414]
 gi|283793354|gb|EFC32121.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 414]
          Length = 460

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD    ++ +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTEIFIHSKKAILIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           ++  K   K T   V+ +D+IL L
Sbjct: 64  ELF-KNVKKNTLKVVKESDIILYL 86



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 27/144 (18%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211
           L  LY  W++K  H   F+  D    EEE++++F                  H  +GK  
Sbjct: 149 LDELY-DWLEKFLH-EEFLIPD----EEENLEDFLE----------------HYEEGKEF 186

Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E+ +N  ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++
Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESIVHKDKVIE 246

Query: 271 ISDTAGIRETDDI--VEKEGIKRT 292
             DTAGIR+   I  +E+  + RT
Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRT 270


>gi|225630952|ref|YP_002727743.1| GTP-binding protein [Wolbachia sp. wRi]
 gi|225592933|gb|ACN95952.1| GTP-binding protein [Wolbachia sp. wRi]
          Length = 441

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKS+  N L  ++  I +  PGTTRD + I  D +G L+ + DTAGIR  
Sbjct: 177 RIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRK 236

Query: 281 DDIVEKEGIKRTFLE 295
            ++V  +G++  F+E
Sbjct: 237 ANVV--DGLESRFVE 249



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 27/36 (75%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           KI I+G  NAGKS+LFN L  +  A+V++IPG TRD
Sbjct: 3   KIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRD 38


>gi|122701619|emb|CAL88199.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L  + V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNSHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|30248179|ref|NP_840249.1| GTP-binding protein EngA [Nitrosomonas europaea ATCC 19718]
 gi|37999533|sp|Q82XU6|DER_NITEU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|30180064|emb|CAD84064.1| GTP-binding protein (HSR1-related):AAA ATPase superfamily
           [Nitrosomonas europaea ATCC 19718]
          Length = 467

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 5/97 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I G  N GKS+L N L  ++  I  D PGTTRD + +D +       + DTAG+R + 
Sbjct: 181 IAIAGRPNVGKSTLINTLLGEERVIAFDQPGTTRDSIYVDFEYGQRSYTLIDTAGLRRSG 240

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +   VEK  + +T   +E A++++L+  +++  EIS
Sbjct: 241 KVWETVEKFSVVKTLQSIEAANVVILV--LDAHHEIS 275



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 30/159 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID--LDLEGYLVKISDTAGIRE 279
           +V++G  N GKS+LFN L +   AIV DIPG TRD       L L+ YLV   DT G   
Sbjct: 5   LVLVGRPNVGKSTLFNRLTRSRDAIVADIPGLTRDRHYGHGRLGLKPYLV--VDTGGF-- 60

Query: 280 TDDIVEKEGI-----KRTFLEVENADLILLL----------KEINSKKEISFPKNIDFIF 324
             + V K GI     K+T   V+ AD++L +           +I +++     + I  + 
Sbjct: 61  --EPVVKSGILHAMAKQTLQAVDEADIVLFIVDGRQGLAAQDKIIAEQLRKTGQKIILVV 118

Query: 325 IGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELIN 356
             T+   YS+ T E+  L       +S+  G+ L ELI+
Sbjct: 119 NKTEGMPYSSVTAEFHELGLGTPCAVSALHGDHLGELID 157


>gi|225873267|ref|YP_002754726.1| ribosome-associated GTPase EngA [Acidobacterium capsulatum ATCC
           51196]
 gi|225793600|gb|ACO33690.1| ribosome-associated GTPase EngA [Acidobacterium capsulatum ATCC
           51196]
          Length = 472

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           GE  +   ++ I+G  N GKS+L NAL     AIV+ I GTTRD +   ++  G  ++I 
Sbjct: 194 GEYEQPETRVAIIGRPNVGKSTLLNALTGSSRAIVSPIAGTTRDAVDEVIEHNGQTLRIV 253

Query: 273 DTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           DTAGIR   +T  + EK  +      +E AD+ LL+
Sbjct: 254 DTAGIRRKGKTYLMAEKLSVVMARRHLEAADVALLV 289



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD- 282
           I+G  N GKS+LFN L +   +IV D PG TRD +  ++   G   ++ DT GI   D+ 
Sbjct: 6   IVGRPNVGKSTLFNRLTESRRSIVGDEPGITRDRIYGEVRWAGRTARLVDTGGIVPDDEA 65

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           ++  E  ++  + +E A+ I+++  ++ + E++ P
Sbjct: 66  LIPAEIFRQARVALEEAEAIVMV--VDGRTELAAP 98


>gi|206891018|ref|YP_002249510.1| GTP-binding protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742956|gb|ACI22013.1| GTP-binding protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 423

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 27/171 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I + G +NAGKSSL NAL  + +AIV+D+PGTT D +   +++   G +V I DTAGI +
Sbjct: 11  IALFGRTNAGKSSLINALTGQSLAIVSDVPGTTTDPVAKAMEILPLGPVVLI-DTAGIDD 69

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL-----------KEINSKKEISFPKNIDFIFIGTK 328
              + E    K+++  ++  DL+LL+           ++I  K E +       I++  K
Sbjct: 70  VGKLGELRK-KKSYEVLDKTDLVLLVIDPEKGFGEFERDIVKKAEET---GTPLIYVVNK 125

Query: 329 SDLYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D++    +    E    +S+ T EG+ EL    ++I++N  K   +++P+
Sbjct: 126 IDIHPEAKKYELPEPKVFVSALTAEGIVEL---KQTIVNNAPKD--WTLPT 171


>gi|170723482|ref|YP_001751170.1| GTP-binding protein EngA [Pseudomonas putida W619]
 gi|229784138|sp|B1JDV4|DER_PSEPW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169761485|gb|ACA74801.1| small GTP-binding protein [Pseudomonas putida W619]
          Length = 487

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  +V D PGTTRD + I  + +       DTAG
Sbjct: 190 KDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDQPGTTRDSIYIPFERDNEKYTFIDTAG 249

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R+   I   VEK  + +T   +++A++++ +
Sbjct: 250 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 281



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L K   AIV D+ G TRD    D   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ + +E AD +L L
Sbjct: 65  VGMDEKMAEQSLMAIEEADYVLFL 88


>gi|122701365|emb|CAL88072.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L  + V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNSHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|121602708|ref|YP_988693.1| GTP-binding protein EngA [Bartonella bacilliformis KC583]
 gi|166224307|sp|A1URU0|DER_BARBK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|120614885|gb|ABM45486.1| GTP-binding protein EngA [Bartonella bacilliformis KC583]
          Length = 473

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  K +A+V D PG TRD        +     + DTAG+ E D
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGKKLALVDDKPGVTRDRRIHAARFQDLYFDVIDTAGLEEAD 64

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINS 310
           D  +E     +T + ++ ADLIL + +  S
Sbjct: 65  DHTLEGRMRSQTKVAIDEADLILFVLDAKS 94



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I G  N GKS+L N++  +D  +     G TRD ++ID +     +K+ DTAG+R  
Sbjct: 205 RIAIAGRPNTGKSTLINSMLGQDRLLTGPEAGVTRDSISIDWEWRSRHIKLFDTAGLRRK 264

Query: 281 DDIVEK 286
             I EK
Sbjct: 265 SKIQEK 270


>gi|99034460|ref|ZP_01314456.1| hypothetical protein Wendoof_01000738 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 405

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKS+  N L  ++  I +  PGTTRD + I  D +G L+ + DTAGIR  
Sbjct: 177 RIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRK 236

Query: 281 DDIVEKEGIKRTFLE 295
            ++V  +G++  F+E
Sbjct: 237 ANVV--DGLESRFVE 249



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 27/36 (75%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           KI I+G  NAGKS+LFN L  +  A+V++IPG TRD
Sbjct: 3   KIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRD 38


>gi|237712743|ref|ZP_04543224.1| GTP-binding protein EngA [Bacteroides sp. D1]
 gi|262408120|ref|ZP_06084667.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_22]
 gi|293369492|ref|ZP_06616071.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CMC 3f]
 gi|294644223|ref|ZP_06721993.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CC 2a]
 gi|294808599|ref|ZP_06767339.1| ribosome-associated GTPase EngA [Bacteroides xylanisolvens SD CC
           1b]
 gi|298480163|ref|ZP_06998361.1| ribosome-associated GTPase EngA [Bacteroides sp. D22]
 gi|229447220|gb|EEO53011.1| GTP-binding protein EngA [Bacteroides sp. D1]
 gi|262353672|gb|EEZ02765.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_22]
 gi|292635377|gb|EFF53890.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CMC 3f]
 gi|292640433|gb|EFF58681.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CC 2a]
 gi|294444198|gb|EFG12925.1| ribosome-associated GTPase EngA [Bacteroides xylanisolvens SD CC
           1b]
 gi|295088054|emb|CBK69577.1| ribosome-associated GTPase EngA [Bacteroides xylanisolvens XB1A]
 gi|298273444|gb|EFI15007.1| ribosome-associated GTPase EngA [Bacteroides sp. D22]
          Length = 437

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 22/168 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP-------KNIDFIFIGTKS 329
             +DD+ E+E  K+  L V+ AD+IL + ++ N   ++           N   I +  K+
Sbjct: 62  VNSDDVFEEEIRKQVLLAVDEADVILFVVDVMNGVTDLDMQVAAILRRANSPVIMVANKT 121

Query: 330 ---DLYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKK 368
              DL     E Y       + +S+ TG G  +L++ I S     FKK
Sbjct: 122 DNHDLQYNAPEFYKLGLGDPYCVSAMTGSGTGDLMDLIVS----NFKK 165



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   ++  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +E +D+ +L+
Sbjct: 237 NKVNEDLEYYSVIRSIRAIEGSDVCILM 264


>gi|1813480|gb|AAB41682.1| putative GTPase [Campylobacter jejuni]
          Length = 383

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD     + +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305
           ++   + +K+  L+V + +D+IL L
Sbjct: 64  ELF--KNVKKNTLKVAKESDIILYL 86



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 27/144 (18%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211
           L  LY +W++K  H   F+  D    EEE++++F                  H  +GK  
Sbjct: 149 LDELY-EWLEKFLH-EEFLIPD----EEENLEDFLE----------------HYEEGKEF 186

Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E+ +N  ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++
Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIE 246

Query: 271 ISDTAGIRETDDI--VEKEGIKRT 292
             DTAGIR+   I  +E+  + RT
Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRT 270


>gi|85860147|ref|YP_462349.1| GTP-binding protein EngA [Syntrophus aciditrophicus SB]
 gi|85723238|gb|ABC78181.1| GTP-binding protein [Syntrophus aciditrophicus SB]
          Length = 447

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L++K  AIV D+PG TRD    D    G    + DT G    +
Sbjct: 7   VAIVGRPNVGKSTLFNRLSQKSKAIVIDVPGATRDRNYADCTWHGRRYTLIDTGGFEPAS 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            + +  +  ++T L +E AD+I+ L
Sbjct: 67  TETILIQMREQTHLAIEEADIIIFL 91



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N +   +  I    PGTTRD +    + +G+   + DTAGIR+ 
Sbjct: 183 RIALIGKPNVGKSSLLNKILGYERTIANPTPGTTRDAIDTPFEFDGHRYLLIDTAGIRKK 242

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +EK  + +    ++  D+ LLL
Sbjct: 243 SRISLSLEKYSVIQALKTLDRCDIALLL 270


>gi|30682040|ref|NP_187815.2| emb2738 (embryo defective 2738); GTP binding [Arabidopsis thaliana]
 gi|209529777|gb|ACI49783.1| At3g12080 [Arabidopsis thaliana]
 gi|332641625|gb|AEE75146.1| GTP-binding protein [Arabidopsis thaliana]
          Length = 663

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL ++D  IV+ + GTTRD +  +    +G   ++ DTAGIR+ 
Sbjct: 371 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 430

Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307
             +       E   + R F  +  +D++ L+ E
Sbjct: 431 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIE 463



 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ I+G  N GKS+LFN L  ++ AIV D PG TRD L
Sbjct: 160 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRL 197


>gi|322373918|ref|ZP_08048453.1| ribosome-associated GTPase EngA [Streptococcus sp. C150]
 gi|321277290|gb|EFX54360.1| ribosome-associated GTPase EngA [Streptococcus sp. C150]
          Length = 436

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + I GTTRD +  + +D EG    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +    EK  + R+   ++ +D++L++  IN+++ I                       EY
Sbjct: 239 VYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  +I
Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTI 299



 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFV 89


>gi|319943736|ref|ZP_08018017.1| GTP-binding protein EngA [Lautropia mirabilis ATCC 51599]
 gi|319742969|gb|EFV95375.1| GTP-binding protein EngA [Lautropia mirabilis ATCC 51599]
          Length = 504

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   ++ ++G  N GKS+L NAL  ++  I  + PGTTRD +T+D        ++ DTAG
Sbjct: 235 RKPVRVAVVGRPNGGKSTLINALLGEERLIAFNQPGTTRDSITVDFRYRNRDYQLIDTAG 294

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R    +   VEK  + +T   +E+ ++ +L+
Sbjct: 295 LRRRGKVHETVEKFSVVKTLQAIEDCNVAVLM 326



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V +IPG TRD       L+G  V + DT G     
Sbjct: 8   IALVGRPNVGKSTLFNRLTRSRDALVANIPGLTRDRHYGSATLDGQRVVLIDTGGFEPVA 67

Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305
              V ++  ++T   V  AD+++ +
Sbjct: 68  ATGVAEQMARQTRQAVIEADVVVFV 92


>gi|225018722|ref|ZP_03707914.1| hypothetical protein CLOSTMETH_02672 [Clostridium methylpentosum
           DSM 5476]
 gi|224948450|gb|EEG29659.1| hypothetical protein CLOSTMETH_02672 [Clostridium methylpentosum
           DSM 5476]
          Length = 440

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 5/89 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K+ I+G  N GKSSL N +A ++  IV+DI GTTRD + T+    E   V I DTAGIR 
Sbjct: 179 KVAIVGKPNVGKSSLINKIAGEERVIVSDIAGTTRDAVDTVVTRGEDQFVLI-DTAGIRR 237

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLL 305
                D +E+  + R  + V+ AD+ +++
Sbjct: 238 KSKVLDTIERYSVLRAHMAVDRADVCVII 266



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + ++IV D PG TRD +  + +       + DT GI  E+
Sbjct: 6   VAVVGRPNVGKSTLFNKLIGRRMSIVDDTPGVTRDRIYSECEWCSRPFLLVDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           +DI+  +  ++  L +++A +I+L+ ++
Sbjct: 66  NDIILSQMRRQAELAIQSAQVIILVTDL 93


>gi|188583713|ref|YP_001927158.1| GTP-binding protein EngA [Methylobacterium populi BJ001]
 gi|179347211|gb|ACB82623.1| small GTP-binding protein [Methylobacterium populi BJ001]
          Length = 446

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  NAGKS+L N +  +D  +V    G TRD +++D +  G  +K+ DTAG+R
Sbjct: 179 GLRVAIVGRPNAGKSTLINRMIGEDRLLVGPEAGITRDSISLDWEWRGRRIKLHDTAGMR 238

Query: 279 ET---DDIVEKEGIKRTFLEVENADLILLL 305
                DD +EK  +      V  A+++++L
Sbjct: 239 RRARIDDKLEKLAVSDGLRAVRFAEVVVVL 268



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 8/64 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL----VKISDTAGI 277
           + I+G  N GKS+LFN L  + +A+V D PG TRD      + EG++     ++ DTAG+
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRD----RREGEGFIGDVAFRVIDTAGL 61

Query: 278 RETD 281
            E D
Sbjct: 62  EEAD 65


>gi|86358709|ref|YP_470601.1| GTP-binding protein EngA [Rhizobium etli CFN 42]
 gi|123511179|sp|Q2K5L2|DER_RHIEC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|86282811|gb|ABC91874.1| GTP-binding protein [Rhizobium etli CFN 42]
          Length = 473

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305
            D + ++     +T   ++ ADL L +
Sbjct: 63  ADEESLQGRMRAQTEAAIDEADLSLFV 89



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R  
Sbjct: 204 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 263

Query: 281 DDIVEK 286
             + EK
Sbjct: 264 ARVTEK 269


>gi|116627238|ref|YP_819857.1| GTP-binding protein EngA [Streptococcus thermophilus LMD-9]
 gi|122268159|sp|Q03MB1|DER_STRTD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|116100515|gb|ABJ65661.1| Predicted GTPase [Streptococcus thermophilus LMD-9]
          Length = 436

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + I GTTRD +  + +D EG    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +    EK  + R+   ++ +D++L++  IN+++ I                       EY
Sbjct: 239 VYENTEKYSVMRSMRAIDRSDVVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  +I
Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTI 299



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQAGIAMTEADVIVFV 89


>gi|330719101|ref|ZP_08313701.1| GTP-binding protein Der [Leuconostoc fallax KCTC 3537]
          Length = 436

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + +AIV D+PG TRD L    D   Y  KI DT GI   +
Sbjct: 6   VAIVGRPNVGKSTIFNRMAGERIAIVEDLPGVTRDRLYASADWLNYDFKIIDTGGIEIGN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    E   +  + +E AD+I+++
Sbjct: 66  EPFLSEIRGQVEIALEEADVIVMV 89



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAG 276
           +  +  I+G  N GKSS+ NA+  ++  IV+DI GTTRD +    +  +G    + DTAG
Sbjct: 173 DAIRFSIIGRPNVGKSSIVNAILGEERVIVSDIEGTTRDAIDSRFMTADGDEFVMVDTAG 232

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R+   +    EK  + R    V+ +++IL++
Sbjct: 233 MRKRGKVYENTEKYSVLRALKAVDESNVILMV 264


>gi|288818845|ref|YP_003433193.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
 gi|288788245|dbj|BAI69992.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
 gi|308752432|gb|ADO45915.1| ribosome-associated GTPase EngA [Hydrogenobacter thermophilus TK-6]
          Length = 432

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G K+  +G  N GKSSL NA+   +  IV+++ GTTRD + +  + +G    + DTAGI
Sbjct: 172 SGIKVSFVGRPNVGKSSLINAILGSERVIVSEVAGTTRDAVEVPFEYKGKEFVLIDTAGI 231

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEIN 309
           R    +   VE   + R+   +E +D++ L+ +I+
Sbjct: 232 RRRPKVEYGVEFFAVGRSIKAIEMSDVVCLVLDIS 266



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 85/171 (49%), Gaps = 21/171 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +++I+G  N GKS+LFN +  +  +IV  IPG TRD++  +   +     ++DT GI E 
Sbjct: 4   QVLIVGRPNVGKSTLFNRIVGRRKSIVHGIPGVTRDIIESEASWKDKKFMVADTGGIFEG 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSD 330
            + + ++  K+    +  A +IL +  ++ ++ I+          +P       +  K D
Sbjct: 64  GEEMSEKVEKQVKKALSEAQVILFV--VDGREGITAGDEYIARMLYPYREKVFLVVNKID 121

Query: 331 -------LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  +Y  Y   ++ +  +S+  G G+ EL++ + S+L ++  KL +S
Sbjct: 122 SEKLQKNVYDFYALGFEKVFPVSAQHGIGVAELLDALHSLLPDEPVKLEYS 172


>gi|284040067|ref|YP_003389997.1| ribosome-associated GTPase EngA [Spirosoma linguale DSM 74]
 gi|283819360|gb|ADB41198.1| ribosome-associated GTPase EngA [Spirosoma linguale DSM 74]
          Length = 435

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I ILG  N GKSS  N L  ++ +IVT+I GTTRD +       G    ++DTAGIR  
Sbjct: 177 RIAILGRPNVGKSSFLNVLTGQERSIVTNIAGTTRDAINTRYKAYGKDFILTDTAGIRRK 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
              D  +E   + R+   +E++D+ ++L
Sbjct: 237 ARVDSNIEFYSVLRSIKAMEDSDVCIIL 264



 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++  AI+ +  G TRD      +       + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTEQRQAIMDNQSGVTRDRHYGTAEWNDKYFTVIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +D+ E+   ++  + ++ + L+L +
Sbjct: 65  EDVFEESIREQVEMAIQESTLLLFV 89


>gi|164686350|ref|ZP_02210380.1| hypothetical protein CLOBAR_02788 [Clostridium bartlettii DSM
           16795]
 gi|164601952|gb|EDQ95417.1| hypothetical protein CLOBAR_02788 [Clostridium bartlettii DSM
           16795]
          Length = 450

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I G  NAGKSS+ N +  ++  IV+ I GTTRD +    + +G    + DTAGIR  
Sbjct: 188 RVAITGKPNAGKSSILNNILGENRVIVSPIAGTTRDAIDTYFEKDGQQYLLIDTAGIRRK 247

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VEK  + R+   VE AD++L++
Sbjct: 248 SKVYERVEKFSVIRSMSAVERADVVLIV 275



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + ++G  N GKS+LFN LA K ++IV D PG TRD +  +++       + DT GI ++ 
Sbjct: 16  VAVVGRPNVGKSTLFNKLAGKRISIVEDTPGVTRDRIFAEVEWLNKYFTLIDTGGIEKDN 75

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D++  +   +  L V+ A +I+ +
Sbjct: 76  GDVILSQMRNQAMLAVDMAHIIIFV 100


>gi|313888319|ref|ZP_07821990.1| ribosome biogenesis GTPase Der [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845722|gb|EFR33112.1| ribosome biogenesis GTPase Der [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 446

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N L  ++ +IVT+IPGTTRD +   +  +G      DTAG+R+ 
Sbjct: 177 RVTLIGKPNVGKSSLLNYLTGENRSIVTNIPGTTRDSIDSLIKYKGNEYIFVDTAGLRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VE+  + RT   +E +++ +L+
Sbjct: 237 KKIVPGVERYSVIRTLTAIERSNVCVLM 264



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +  + V+I  D PG TRD +        Y   + DT G+   D
Sbjct: 6   ISIIGRPNVGKSTLFNKIVGRKVSITEDTPGVTRDRIYQPATWLNYKFLLVDTGGLDLKD 65

Query: 282 DIVEKEGIKRTF-LEVENADLILLL 305
           + +    IK    + +E +D+++ +
Sbjct: 66  EDIFMSSIKAQIDIALETSDVVIFV 90


>gi|297617742|ref|YP_003702901.1| small GTP-binding protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145579|gb|ADI02336.1| small GTP-binding protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 416

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 20/166 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I G  N GKSSL NAL  +D+A+V+ + GTT D +   ++ L    V+I DTAGI + 
Sbjct: 13  IAIFGRRNVGKSSLINALTNQDIALVSPMAGTTTDPVYKAMEILPIGPVEIIDTAGI-DD 71

Query: 281 DDIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSD-- 330
           +  + +  IK+T   +   DL +L       + E  ++ KE    KNI  +F  +K+D  
Sbjct: 72  EGFLGQLRIKKTMEVLNKTDLAVLVIDPVLGVGEFETRLKETIEKKNIPIVFAASKADTP 131

Query: 331 -----LYSTYTEEYDHLI---SSFTGEGLEELINKIKSILSNKFKK 368
                   T+ E     I   SS T  GLEEL  ++      +F++
Sbjct: 132 EFSLETVKTWEEVLGKPIIPVSSLTRSGLEELKQQMIKAAPRQFEE 177


>gi|110639446|ref|YP_679655.1| GTP-binding protein EngA [Cytophaga hutchinsonii ATCC 33406]
 gi|123354325|sp|Q11QK1|DER_CYTH3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|110282127|gb|ABG60313.1| GTP-binding protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 435

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I +LG  NAGKSS  NAL   + +IVTD  GTTRD +T   ++ G      DTAGIR+ 
Sbjct: 177 RIAVLGRPNAGKSSYVNALLGTNRSIVTDQAGTTRDSITSHYNVFGKEFIFVDTAGIRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VE   I R+   +E +D+ +++
Sbjct: 237 SRIKEDVEYYSILRSVKALEESDVCVIM 264



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L    +AI+ D  G TRD    + +  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRLVGARIAIMDDESGVTRDRHYGEAEWCGKFFTVIDTGGYVTGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI E +   +  + ++ AD+IL L
Sbjct: 65  DDIFEGQIRDQVDIAIDEADVILFL 89


>gi|297545446|ref|YP_003677748.1| small GTP-binding protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843221|gb|ADH61737.1| small GTP-binding protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 408

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 13/127 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I G  NAGKSSL NAL  ++VA+V+D+ GTT D ++  ++ L    V I DTAG+ +T
Sbjct: 12  IAIFGRRNAGKSSLINALTNQEVALVSDVAGTTTDPVSKAMEILPIGPVVIIDTAGLDDT 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIGTKSDL 331
            ++ E   +K+T+  +   DL +L+          E N  K I   KNI  + +  K DL
Sbjct: 72  GELGELR-VKKTYEVLNRTDLAILVIDGTIGLSEFEENVLKVIR-DKNIPVVGVINKKDL 129

Query: 332 YSTYTEE 338
            S Y+EE
Sbjct: 130 -SQYSEE 135


>gi|71894165|ref|YP_278273.1| GTP-binding protein EngA [Mycoplasma synoviae 53]
          Length = 438

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N +K+ I+G  NAGKSSL N L  +  +IV++IPGTTRD +   L ++    +I DTA
Sbjct: 169 LENNFKLSIIGKPNAGKSSLLNKLTNEYRSIVSEIPGTTRDSVKSFLKIKDQNFEIIDTA 228

Query: 276 GIRETDDIVE 285
           GI     +VE
Sbjct: 229 GIMRKSKLVE 238



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  + ++IV D PG TRD L   +      +KI DT GI   +
Sbjct: 8   IAIIGKPNVGKSTLFNRLNGRKISIVDDTPGVTRDRLYEVISWLNKEIKIIDTGGIEIKN 67

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              +++   +  + +E AD+I  +
Sbjct: 68  APFQEQIQIQAKIAIEEADVIFFV 91


>gi|327189207|gb|EGE56387.1| GTP-binding protein [Rhizobium etli CNPAF512]
          Length = 473

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305
            D + ++     +T   ++ ADL L +
Sbjct: 63  ADEESLQGRMRAQTEAAIDEADLSLFV 89



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R  
Sbjct: 204 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 263

Query: 281 DDIVEK 286
             + EK
Sbjct: 264 ARVTEK 269


>gi|122702787|emb|CAL88583.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|122701339|emb|CAL88059.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  TLLSKEIKALNLKAAQMSDLIL 90


>gi|290993400|ref|XP_002679321.1| [Fe] hydrogenase maturation protein [Naegleria gruberi]
 gi|284092937|gb|EFC46577.1| [Fe] hydrogenase maturation protein [Naegleria gruberi]
          Length = 543

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +N      + +S   S   +G I      I I+G  N+GKS+L N L   + +IV   PG
Sbjct: 60  MNSKQLFHSGVSLSDSANNIGSIYIERTNIAIVGAMNSGKSTLMNCLTNSNTSIVDSTPG 119

Query: 253 TTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           TT DV    ++L G    K+ DT G  E  D+ EK+  ++T + ++ +D+++++
Sbjct: 120 TTADVKMTTMELHGIGPTKLFDTPGTDEASDLGEKKR-QKTLIALKESDIVVVV 172


>gi|209550425|ref|YP_002282342.1| GTP-binding protein EngA [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|238058977|sp|B5ZYX3|DER_RHILW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|209536181|gb|ACI56116.1| small GTP-binding protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 473

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305
            D + ++     +T   ++ ADL L +
Sbjct: 63  ADEESLQGRMRAQTEAAIDEADLSLFV 89



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R  
Sbjct: 204 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 263

Query: 281 DDIVEK 286
             + EK
Sbjct: 264 ARVTEK 269


>gi|218961273|ref|YP_001741048.1| Fe-hydrogenase assembly protein (C-terminal fragment); GTPase
           activity domain [Candidatus Cloacamonas acidaminovorans]
 gi|167729930|emb|CAO80842.1| Fe-hydrogenase assembly protein (C-terminal fragment); GTPase
           activity domain [Candidatus Cloacamonas acidaminovorans]
          Length = 405

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 79/168 (47%), Gaps = 27/168 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I+G  NAGKSSL NAL  +D+AIV+ +PGTT D +    +L     V   DTAG+ +T
Sbjct: 12  IAIIGKRNAGKSSLINALVGQDIAIVSAVPGTTTDPVDKRYELLPLGPVTFFDTAGVDDT 71

Query: 281 DDIVEKEGIKRTFLEVENADLILL-----------LKEINSKKEISFPKNIDFIFIGTKS 329
            ++ EK  IK T   +  AD+ +            LK I   +E+  P  I F     K 
Sbjct: 72  GELGEKR-IKATQKILYRADIAIFVSDGNAFNNAELKMIEKIREMELPMLIVF----NKK 126

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK 368
           D+     E              +SS T EG++E   K+   LS K+ K
Sbjct: 127 DIIPVCQENIAFCQKYSLPYISVSSVTKEGIDECKEKLIQ-LSPKYLK 173


>gi|297829768|ref|XP_002882766.1| EMB2738 [Arabidopsis lyrata subsp. lyrata]
 gi|297328606|gb|EFH59025.1| EMB2738 [Arabidopsis lyrata subsp. lyrata]
          Length = 661

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL ++D  IV+ + GTTRD +  +    +G   ++ DTAGIR+ 
Sbjct: 369 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 428

Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307
             +       E   + R F  +  +D++ L+ E
Sbjct: 429 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIE 461



 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ I+G  N GKS+LFN L  ++ AIV D PG TRD L
Sbjct: 158 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRL 195


>gi|163853441|ref|YP_001641484.1| small GTP-binding protein [Methylobacterium extorquens PA1]
 gi|218532301|ref|YP_002423117.1| GTP-binding protein EngA [Methylobacterium chloromethanicum CM4]
 gi|240140861|ref|YP_002965341.1| GTP-binding protein EngA, GTPase [Methylobacterium extorquens AM1]
 gi|254563370|ref|YP_003070465.1| GTP-binding protein EngA, GTPase [Methylobacterium extorquens DM4]
 gi|163665046|gb|ABY32413.1| small GTP-binding protein [Methylobacterium extorquens PA1]
 gi|218524604|gb|ACK85189.1| small GTP-binding protein [Methylobacterium chloromethanicum CM4]
 gi|240010838|gb|ACS42064.1| GTP-binding protein EngA, GTPase [Methylobacterium extorquens AM1]
 gi|254270648|emb|CAX26652.1| GTP-binding protein EngA, GTPase [Methylobacterium extorquens DM4]
          Length = 446

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  NAGKS+L N +  +D  +V    G TRD +++D +  G  +K+ DTAG+R
Sbjct: 179 GLRVAIVGRPNAGKSTLINRMIGEDRLLVGPEAGITRDSISLDWEWRGRRIKLHDTAGMR 238

Query: 279 ET---DDIVEKEGIKRTFLEVENADLILLL 305
                DD +EK  +      V  A+++++L
Sbjct: 239 RRARIDDKLEKLAVSDGLRAVRFAEVVVVL 268



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 32/166 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL----VKISDTAGI 277
           + I+G  N GKS+LFN L  + +A+V D PG TRD      + EG++     ++ DTAG+
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRD----RREGEGFIGDVAFRVIDTAGL 61

Query: 278 RETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFI 325
            E D D +      +T   +  AD +L +  I+++  +  P +  F           I I
Sbjct: 62  EEADADSLLGRMRAQTEAAILEADAVLFV--IDARAGV-LPSDRPFAELVRRSGCPVILI 118

Query: 326 GTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             K++  +     YD            S+  GEGL  L + ++ +L
Sbjct: 119 ANKAEGGAGMAGAYDAFSLGLGDPIPFSAEHGEGLGSLQDALREVL 164


>gi|94971659|ref|YP_593707.1| GTP-binding protein EngA [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553709|gb|ABF43633.1| Small GTP-binding protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 511

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  +  AIV D PG TRD L    +  G  +++ DT GI   D
Sbjct: 17  IAIVGRPNVGKSTLFNRLVGQRRAIVGDEPGITRDRLYGYSEWAGKRLRVVDTGGIVPDD 76

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322
           + ++  E  ++  + +E AD+I+++  ++++ E++ P +ID 
Sbjct: 77  EALIPAEIFRQAKVALEEADVIVMV--VDARTELASP-DIDL 115



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           KI I+G  N GKS++ N L     AIV+ I GTTRD +   ++ +G + +  DTAGIR  
Sbjct: 241 KIAIIGRPNVGKSTMLNRLTGTARAIVSPIAGTTRDAVDEVVERDGQIFRFIDTAGIRRK 300

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +T  + EK  +      +E ADL L+L
Sbjct: 301 GKTRLMAEKLSVVMARKHLEAADLALVL 328


>gi|40062766|gb|AAR37660.1| GTP-binding protein, Era/TrmE family [uncultured marine bacterium
           439]
          Length = 463

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + +LG  N GKS+L N +  ++  +  DIPGTTRD + I    EG    + DTAGIR
Sbjct: 176 GIAVAVLGRPNVGKSTLINRILGEERVLAIDIPGTTRDTIFIPFTREGEQYTLIDTAGIR 235

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305
               +   VEK  I +    +E++ +++L+
Sbjct: 236 RKRSVEEKVEKFSIIKAIEALEDSHVVILV 265



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           I ++G  N GKS+LFN L+    A+V+D  G TRD    T+ LD E  +  I DT G+  
Sbjct: 6   ISLVGRPNVGKSTLFNRLSNSRQALVSDFEGLTRDRQYATVQLDDE-TMCSIIDTGGLTN 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            D +++    ++    ++ +D+I  +
Sbjct: 65  EDSLIDTGIHEQVLSALDESDVIFFI 90


>gi|22537760|ref|NP_688611.1| GTP-binding protein EngA [Streptococcus agalactiae 2603V/R]
 gi|76788647|ref|YP_330237.1| GTP-binding protein EngA [Streptococcus agalactiae A909]
 gi|76798461|ref|ZP_00780699.1| GTP-binding protein engA [Streptococcus agalactiae 18RS21]
 gi|77408494|ref|ZP_00785232.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae
           COH1]
 gi|77411928|ref|ZP_00788259.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae
           CJB111]
 gi|41017044|sp|Q8DY73|DER_STRA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123601399|sp|Q3JZR6|DER_STRA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|22534651|gb|AAN00484.1|AE014265_13 phosphoglycerate dehydrogenase-related protein [Streptococcus
           agalactiae 2603V/R]
 gi|76563704|gb|ABA46288.1| GTP-binding protein EngA, putative [Streptococcus agalactiae A909]
 gi|76586195|gb|EAO62715.1| GTP-binding protein engA [Streptococcus agalactiae 18RS21]
 gi|77162025|gb|EAO73005.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae
           CJB111]
 gi|77172936|gb|EAO76067.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae
           COH1]
          Length = 436

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + + GTTRD +  + +D +G    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTNFVDSQGQEYTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +    EK  + R+   ++ +D++L++  IN+++ I                       EY
Sbjct: 239 VYENTEKYSVMRSMRAIDRSDVVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F   TG+G+  ++NK  +I
Sbjct: 275 DKRIAGFAHETGKGIIIVVNKWDTI 299



 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFV 89


>gi|291546330|emb|CBL19438.1| ribosome-associated GTPase EngA [Ruminococcus sp. SR1/5]
          Length = 441

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA  +++IV D PG TRD +  D+        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGDNISIVKDTPGVTRDRIYADVTWLDRTFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+     ++  + ++ AD+I+ + ++
Sbjct: 66  SDIILSRMREQAQIAIDTADVIIFITDV 93



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSL N L  ++  IV++I GTTRD +   +          DTAG+R  
Sbjct: 179 KIAIVGKPNVGKSSLINKLLGEERVIVSNIAGTTRDAIDTKVTWNKKDYIFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENAD 300
             +   +E+  + RT   VE AD
Sbjct: 239 GKVKEEIERYSVIRTVTAVERAD 261


>gi|144574977|gb|AAZ43562.2| GTP-binding protein EngA [Mycoplasma synoviae 53]
          Length = 435

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N +K+ I+G  NAGKSSL N L  +  +IV++IPGTTRD +   L ++    +I DTA
Sbjct: 166 LENNFKLSIIGKPNAGKSSLLNKLTNEYRSIVSEIPGTTRDSVKSFLKIKDQNFEIIDTA 225

Query: 276 GIRETDDIVE 285
           GI     +VE
Sbjct: 226 GIMRKSKLVE 235



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  + ++IV D PG TRD L   +      +KI DT GI   +
Sbjct: 5   IAIIGKPNVGKSTLFNRLNGRKISIVDDTPGVTRDRLYEVISWLNKEIKIIDTGGIEIKN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              +++   +  + +E AD+I  +
Sbjct: 65  APFQEQIQIQAKIAIEEADVIFFV 88


>gi|122702707|emb|CAL88543.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|12322014|gb|AAG51052.1|AC069473_14 GTPase, putative; 34281-30152 [Arabidopsis thaliana]
          Length = 659

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL ++D  IV+ + GTTRD +  +    +G   ++ DTAGIR+ 
Sbjct: 367 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 426

Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307
             +       E   + R F  +  +D++ L+ E
Sbjct: 427 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIE 459



 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ I+G  N GKS+LFN L  ++ AIV D PG TRD L
Sbjct: 156 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRL 193


>gi|89897898|ref|YP_515008.1| GTP-binding protein EngA [Chlamydophila felis Fe/C-56]
 gi|123483923|sp|Q256C5|DER_CHLFF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|89331270|dbj|BAE80863.1| GTP-binding GTPase [Chlamydophila felis Fe/C-56]
          Length = 475

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           +I ILG  N GKSSLFN + K+ +AIV    GTTRD L  ++      V++ DT G+ ++
Sbjct: 3   RIAILGRPNVGKSSLFNRMCKQSLAIVNSQEGTTRDRLYGEIRGWSVPVQVIDTGGVDKD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI 308
           ++D  +K   K+       AD++LL+ +I
Sbjct: 63  SEDHFQKHIYKQALAGAGEADILLLVIDI 91



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSS+ N L  ++  I+ +IPGTTRD + I            DTAG+R+ 
Sbjct: 214 KIALIGRPNVGKSSIINGLLNEERCIIDNIPGTTRDNVDILYSHNDRSYLFIDTAGLRKM 273

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E     RT   +  AD+ LL+
Sbjct: 274 KSVKNSIEWISSSRTEKAIARADICLLV 301


>gi|209885506|ref|YP_002289363.1| small GTP-binding protein domain [Oligotropha carboxidovorans OM5]
 gi|209873702|gb|ACI93498.1| small GTP-binding protein domain [Oligotropha carboxidovorans OM5]
          Length = 469

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 3/96 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  NAGKS+L N L  ++  + +   GTTRD + +D++ +G  +++ DTAG+R  
Sbjct: 199 RVAVLGRPNAGKSTLINYLLGEERLLTSPEAGTTRDSIAVDVEWKGRKLRVFDTAGLRRR 258

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
              DD +EK  +      V  A++++L+ +  ++ E
Sbjct: 259 SRIDDKLEKLSVSDALRAVRFAEVVVLVMDAQNRFE 294



 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 32/58 (55%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I I+G  N GKS+LFN L  + +A+V D PG TRD       L      I DTAG+
Sbjct: 13  FTIAIIGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRREGQGRLGDLDFTIIDTAGL 70


>gi|228476619|ref|ZP_04061301.1| ribosome-associated GTPase EngA [Streptococcus salivarius SK126]
 gi|228251814|gb|EEK10879.1| ribosome-associated GTPase EngA [Streptococcus salivarius SK126]
          Length = 457

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + I GTTRD +  + +D EG    + DTAG+R++  
Sbjct: 200 LIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGMRKSGK 259

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +    EK  + R+   ++ +D++L++  IN+++ I                       EY
Sbjct: 260 VYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI----------------------REY 295

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  +I
Sbjct: 296 DKRIAGFAHEAGKGIIIVVNKWDTI 320



 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 27  VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 86

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 87  APFMEQIKHQADIAMTEADVIVFV 110


>gi|190892852|ref|YP_001979394.1| GTP-binding protein [Rhizobium etli CIAT 652]
 gi|238692517|sp|B3PVJ6|DER_RHIE6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|190698131|gb|ACE92216.1| GTP-binding protein [Rhizobium etli CIAT 652]
          Length = 473

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305
            D + ++     +T   ++ ADL L +
Sbjct: 63  ADEESLQGRMRAQTEAAIDEADLSLFV 89



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R  
Sbjct: 204 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 263

Query: 281 DDIVEK 286
             + EK
Sbjct: 264 ARVTEK 269


>gi|307946716|ref|ZP_07662051.1| ribosome-associated GTPase EngA [Roseibium sp. TrichSKD4]
 gi|307770380|gb|EFO29606.1| ribosome-associated GTPase EngA [Roseibium sp. TrichSKD4]
          Length = 478

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 24/162 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L      I DTAG+ 
Sbjct: 2   GATVAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGEARLGDLRFTIVDTAGLE 61

Query: 279 ETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK--------- 328
           + D   +E    K+T   +E A+ IL +  I+++  ++ P +  F  I  K         
Sbjct: 62  DADASSLEGRMRKQTEDAIEEANAILFV--IDARAGVT-PLDAHFAAIARKTTTPVILLA 118

Query: 329 ---------SDLYSTYTEEYDHLI--SSFTGEGLEELINKIK 359
                    S LY +Y+      I  S+  GEGL +L + +K
Sbjct: 119 NKAEGRAGESGLYESYSLGLGEPIAVSAEHGEGLADLYDALK 160



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N +  +D  +     G TRD +++D +     VK+ DTAGIR  
Sbjct: 207 RVAIVGRPNAGKSTLINRMLGEDRMLTGPEAGITRDSISVDWEWRERHVKLFDTAGIRRK 266

Query: 281 DDIVEK 286
             + EK
Sbjct: 267 ARVQEK 272


>gi|122702457|emb|CAL88419.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320
            ++ KE         + +DLIL +   K I S ++I   + I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110


>gi|58617258|ref|YP_196457.1| GTP-binding protein EngA [Ehrlichia ruminantium str. Gardel]
 gi|58416870|emb|CAI27983.1| Probable GTP-binding protein engA [Ehrlichia ruminantium str.
           Gardel]
          Length = 439

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  NAGKS+  N L  +D  IV+  PGTTRD + I+ + +G    + DTAG+R+ 
Sbjct: 175 KISIVGRPNAGKSTFVNRLVGEDRMIVSSEPGTTRDAVDIEYEYQGQKFILIDTAGMRKK 234

Query: 281 DDIVEKEGIKRTFLEVEN---ADLILLL 305
             I E   +   +  +E+   +D+++L+
Sbjct: 235 AKITENIELTSVYKSIESINRSDIVILM 262



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 8/104 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--R 278
           K+ I+G  N GKS++FN L KK  AIV+++P  TRD      DL G   K+ DT G+  R
Sbjct: 3   KVAIVGLPNVGKSTIFNRLVKKRSAIVSNVPNLTRDRREGSADLCGLKFKVIDTGGVDYR 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322
               ++  + +K   L +E  D+I  + +   +++I   KNI+F
Sbjct: 63  IKLSVLILDQVK---LAIEACDVIFFVVDARVERDI---KNIEF 100


>gi|283458421|ref|YP_003363045.1| putative GTPase [Rothia mucilaginosa DY-18]
 gi|283134460|dbj|BAI65225.1| predicted GTPase [Rothia mucilaginosa DY-18]
          Length = 528

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           + L++IL    ++    SQ    E +    ++ ++G  N GKSSL N LA  + A+V D+
Sbjct: 227 DALDEIL----EVMPEHSQFAQPEALGGPRRVALVGRPNVGKSSLLNKLAGSERAVVNDL 282

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            GTTRD +   ++L GY  +  DTAGIR
Sbjct: 283 AGTTRDPIDEIIELGGYPWRFVDTAGIR 310



 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKS++ N +  +  A+V D PG TRD ++   +  G    + DT G
Sbjct: 79  VAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWLGKSFTLVDTGG 133


>gi|307128641|ref|YP_003880671.1| GTP-binding protein EngA [Candidatus Sulcia muelleri CARI]
 gi|306483103|gb|ADM89973.1| GTP-binding protein EngA [Candidatus Sulcia muelleri CARI]
          Length = 436

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I I+G  N GKS+L N L  K+  IVT+I GTTRD + +     G    + DTAGIR  
Sbjct: 177 RIAIVGRPNVGKSTLINTLLNKNQNIVTNISGTTRDSIDVFYKKFGIECILVDTAGIRKK 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            +  + +E   + R    ++N+D+ LL+ +I S
Sbjct: 237 KKIKENIEFYSVMRAIKSIQNSDVCLLIIDIKS 269



 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 221 KIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IR 278
           KIV I+G SN GKS+LFN L     +IV    G TRD      +  G    + DT G   
Sbjct: 3   KIVSIVGRSNVGKSTLFNRLIGYRKSIVNYKSGVTRDRNYGFCNWNGIEFCLIDTGGYTN 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           ++++I EK+  ++ F  +E +D++L L
Sbjct: 63  KSENIFEKKICEQFFFALEESDILLFL 89


>gi|145332365|ref|NP_001078139.1| emb2738 (embryo defective 2738); GTP binding [Arabidopsis thaliana]
 gi|332641626|gb|AEE75147.1| GTP-binding protein [Arabidopsis thaliana]
          Length = 587

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL ++D  IV+ + GTTRD +  +    +G   ++ DTAGIR+ 
Sbjct: 371 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 430

Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307
             +       E   + R F  +  +D++ L+ E
Sbjct: 431 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIE 463



 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ I+G  N GKS+LFN L  ++ AIV D PG TRD L
Sbjct: 160 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRL 197


>gi|57168525|ref|ZP_00367658.1| GTPase [Campylobacter coli RM2228]
 gi|305432942|ref|ZP_07402100.1| ribosome-associated GTPase EngA [Campylobacter coli JV20]
 gi|57020030|gb|EAL56707.1| GTPase [Campylobacter coli RM2228]
 gi|304444096|gb|EFM36751.1| ribosome-associated GTPase EngA [Campylobacter coli JV20]
          Length = 460

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 5/113 (4%)

Query: 202 DISSHISQGK---LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           D   H  +GK     E+ +N  ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +
Sbjct: 175 DFLEHYEEGKEFQFKELDQNYIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPV 234

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEIN 309
              +  +  +++  DTAGIR+   I  +E+  + RT   + N+ + LL+ + N
Sbjct: 235 NESIVYKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSNSQIALLVLDAN 287



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI ++I GTTRD    ++ +      + D+ G+ E++
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSEISGTTRDTNKTEVFINSKKALLIDSGGLDESN 63

Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305
           ++   + +K+  L++ + +D+IL L
Sbjct: 64  ELF--KNVKKNTLKIAKQSDIILYL 86


>gi|311030574|ref|ZP_07708664.1| GTP-binding protein EngA [Bacillus sp. m3-13]
          Length = 436

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NAL  ++  IV+DI GTTRD +      +G    I DTAG+R+ 
Sbjct: 177 KFSLIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDAIDTPYSYDGKDYVIIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E +D++L++
Sbjct: 237 GKVYETTEKYSVLRALRAIERSDVVLVV 264



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +       I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSGEWLNQYFNIIDTGGIEISD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
                +  ++  + ++ AD+I+ +
Sbjct: 66  APFMTQIREQAEIAIDEADVIIFM 89


>gi|292806610|gb|ADE42435.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|260575150|ref|ZP_05843151.1| small GTP-binding protein [Rhodobacter sp. SW2]
 gi|259022772|gb|EEW26067.1| small GTP-binding protein [Rhodobacter sp. SW2]
          Length = 492

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  + +A+V D PG TRD+   D  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGRKLALVDDQPGVTRDLREGDAKLFDLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TDD ++    + T   VE AD+ L L
Sbjct: 63  VTDDSLQGRMRRLTERAVEMADVCLFL 89



 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 37/66 (56%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  NAGKS+L N +   D  +     G TRD +++  D     ++I DTAG+R+ 
Sbjct: 204 QIAVIGRPNAGKSTLINKIVGFDRMLTGPEAGITRDAISVKADWFDTPIRIFDTAGMRKK 263

Query: 281 DDIVEK 286
             I +K
Sbjct: 264 ARISDK 269


>gi|292806624|gb|ADE42442.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|9294105|dbj|BAB01956.1| GTP-binding protein-like [Arabidopsis thaliana]
          Length = 537

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL ++D  IV+ + GTTRD +  +    +G   ++ DTAGIR+ 
Sbjct: 245 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 304

Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307
             +       E   + R F  +  +D++ L+ E
Sbjct: 305 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIE 337



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 11/81 (13%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E+E ++   ++     +      I  H+ Q           ++ I+G  N GKS+LFN
Sbjct: 2   FPEDETIEGKETRRKGKRLAKNTQQIPEHLLQ-----------RVAIVGRPNVGKSALFN 50

Query: 238 ALAKKDVAIVTDIPGTTRDVL 258
            L  ++ AIV D PG TRD L
Sbjct: 51  RLVGENRAIVVDEPGVTRDRL 71


>gi|297161654|gb|ADI11366.1| GTP-binding protein EngA [Streptomyces bingchenggensis BCW-1]
          Length = 488

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 37/191 (19%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            G  I    +I ++G  N GKSSL N +A ++  +V ++ GTTRD +   ++L G   K 
Sbjct: 218 FGAAIGGPRRIALIGRPNVGKSSLLNKVAGEERVVVNEMAGTTRDPVDELIELGGVTWKF 277

Query: 272 SDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
            DTAGIR    +  +EG       RT   VE A+L ++L  I+S + IS  ++   I + 
Sbjct: 278 VDTAGIRRRVHL--QEGADYYASLRTAAAVEKAELAVIL--IDSSESISV-QDQRIISMA 332

Query: 327 TKS--------DLYSTYTEEYDHL-------------------ISSFTGEGLEELINKIK 359
            ++        + + T  EE  +                    +S+ TG  +E+L+  I+
Sbjct: 333 VEAGRAIVVAYNKWDTLDEERRYYLEREIETELGQIQWAPRVNVSARTGRHMEKLVPAIE 392

Query: 360 SILSNKFKKLP 370
           + L+    ++P
Sbjct: 393 TALTGWETRVP 403



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G  +  
Sbjct: 53  LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVTYEAEWSGRRFKVVDTGGWEQDV 112

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     +    +E AD ++ +
Sbjct: 113 LGIDASVAAQAEFAIEAADAVVFV 136


>gi|307720282|ref|YP_003891422.1| ribosome-associated GTPase EngA [Sulfurimonas autotrophica DSM
           16294]
 gi|306978375|gb|ADN08410.1| ribosome-associated GTPase EngA [Sulfurimonas autotrophica DSM
           16294]
          Length = 492

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 7/121 (5%)

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
           +  +E+ +D +F +ND      +  +  I     KI I+G +N GKSSL NAL  ++ ++
Sbjct: 205 WDEEEIEDDSIFAQNDRIKEFDENDINHI-----KIAIIGRTNVGKSSLLNALLGEERSV 259

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV--EKEGIKRTFLEVENADLILL 304
           V+ + GTT D +   +  +   +   DTAG+R    IV  EK  + RT   +ENA++ L+
Sbjct: 260 VSSVAGTTIDPIDETIVYKDKQLTFVDTAGLRRRGKIVGIEKFALMRTKEMLENANMALV 319

Query: 305 L 305
           +
Sbjct: 320 V 320



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 13/91 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-----LTIDLDLEGYLVKISDTA 275
           KI I+G  N GKSSLFN L KK  AI +D+ GTTRDV     L ID + E     + DT 
Sbjct: 3   KIAIIGRPNVGKSSLFNRLVKKRDAITSDLAGTTRDVKRKTALIIDKEAE-----LLDTG 57

Query: 276 GIRETDDIVEKEGIKRTFLEVE-NADLILLL 305
           G+ +  ++ +K  IK   L+    AD+IL +
Sbjct: 58  GLDKGCELFDK--IKEMSLKAAYKADIILFM 86


>gi|226328001|ref|ZP_03803519.1| hypothetical protein PROPEN_01892 [Proteus penneri ATCC 35198]
 gi|225203705|gb|EEG86059.1| hypothetical protein PROPEN_01892 [Proteus penneri ATCC 35198]
          Length = 119

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD      +LEG    I DT GI   +
Sbjct: 10  IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEGEEFIIIDTGGIDGAE 69

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + VE     ++   ++ AD++L L
Sbjct: 70  EGVETHMASQSLQAIQEADIVLFL 93


>gi|115377683|ref|ZP_01464876.1| GTP-binding protein EngA [Stigmatella aurantiaca DW4/3-1]
 gi|310821559|ref|YP_003953917.1| GTP-binding protein EngA [Stigmatella aurantiaca DW4/3-1]
 gi|115365289|gb|EAU64331.1| GTP-binding protein EngA [Stigmatella aurantiaca DW4/3-1]
 gi|309394631|gb|ADO72090.1| GTP-binding protein EngA [Stigmatella aurantiaca DW4/3-1]
          Length = 462

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 33/193 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKS++ NA+ K+   + +++PGTTRD +   L  +G+ + ++DTAGIR  
Sbjct: 184 RVAIIGRPNVGKSTMVNAILKEKRVVASEVPGTTRDPIDSALTYKGHKLILTDTAGIRRK 243

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             I   VE+  +      ++ +D+ +LL +              ++  K    + +  K 
Sbjct: 244 RSIAHRVEQFSVVSALKVMDRSDVAVLLMDATEPAVDQDAKLAGLAEDKGRALVIVVNKW 303

Query: 330 DLYST-------YTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFK-KLP 370
           DL  T       Y E   H             S+ TG  +E++++ I   L+ +F+ + P
Sbjct: 304 DLIGTDQRRQEAYREALKHSLKFVGYAPIIFTSALTGSKVEKVVD-IAVELAEQFRYRAP 362

Query: 371 FSIPSHKRHLYHL 383
              P   R L H+
Sbjct: 363 --TPQLNRLLEHM 373



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN LA + +A+V D PG TRD    D         + DT G +   
Sbjct: 5   VAIVGRPNVGKSTLFNRLAGRRLALVEDEPGVTRDRHYADAQWGDRAFTLIDTGGFVPGE 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            D + K+  ++  L VE  D+IL + +
Sbjct: 65  KDSLLKQVREQAQLAVEECDVILFVTD 91


>gi|85707619|ref|ZP_01038685.1| predicted GTPase [Erythrobacter sp. NAP1]
 gi|85689153|gb|EAQ29156.1| predicted GTPase [Erythrobacter sp. NAP1]
          Length = 475

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +++I+G  N GKS+LFN L  K +A+V D PG TRD    D ++ G    I DTAG  + 
Sbjct: 4   QVIIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRMGDAEIAGLKFTIVDTAGWEDE 63

Query: 281 DDIVEKEGI-KRTFLEVENADLILLL 305
           D++     + K+T   +E AD  L +
Sbjct: 64  DELTLPGRMRKQTEASLEGADAALFV 89



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL------EGYLVKISDT 274
           K+ I+G  NAGKS+L N L  +D  +     G TRD + ID +       E   +++ DT
Sbjct: 190 KLAIVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIAIDWEWTDPKSGETREIRLIDT 249

Query: 275 AGIRETDDIVEK 286
           AG+R+  ++VEK
Sbjct: 250 AGMRKKRNVVEK 261


>gi|288556077|ref|YP_003428012.1| GTP-binding protein Der [Bacillus pseudofirmus OF4]
 gi|288547237|gb|ADC51120.1| GTP-binding protein EngA [Bacillus pseudofirmus OF4]
          Length = 437

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 59/97 (60%), Gaps = 5/97 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL NA+  ++  IV++IPGTTRD +      +G    + DTAG+R+ 
Sbjct: 177 RISLIGRPNVGKSSLVNAMLGEERVIVSNIPGTTRDAIDTSFTRDGQDYVLIDTAGMRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             +    EK  + R+   +E ++++L++  IN+++ I
Sbjct: 237 GKVYESTEKYSVLRSLKAIERSNVVLVV--INAEEGI 271



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 8/97 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIR 278
           + I+G  N GKS++FN +  + VAIV D+PG TRD L      LD E  L+   DT GI 
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVAIVEDMPGVTRDRLYSHGEWLDREFNLI---DTGGIE 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             D+ +  +  ++  L +E AD+I+ +  +N ++ I+
Sbjct: 63  LADEPLLNQMREQAELAIEEADVIVFI--VNGREGIT 97


>gi|193212091|ref|YP_001998044.1| GTP-binding protein EngA [Chlorobaculum parvum NCIB 8327]
 gi|238692612|sp|B3QLF4|DER_CHLP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|193085568|gb|ACF10844.1| small GTP-binding protein [Chlorobaculum parvum NCIB 8327]
          Length = 438

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ +LG  N GKSSL NAL   D  IV+D+PGTTRD +   L   G    + DTAG+R+ 
Sbjct: 180 KLAVLGRPNVGKSSLVNALLGTDRQIVSDVPGTTRDAIDSVLKRNGKEYILIDTAGLRKR 239

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E     RT   +E   + L+L
Sbjct: 240 TKIDPGIEYYSSLRTERAIERCQVALVL 267



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 23/158 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + ++  AIV   PG TRD      + +G    + DT G    +
Sbjct: 5   IALVGRPNVGKSTLFNRILRQKSAIVDPTPGVTRDRHINPGEWQGKQFLLMDTGGYAPEN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL------------------LLKEINSKKEISFPKN-ID- 321
           D +    + +T   + +AD I+                  +LK+  S K+I F  N +D 
Sbjct: 65  DSLSVAMLDQTMRAIADADAIIFMVDARSGLTYLDLDIAKILKQTFSDKKIFFAINKVDN 124

Query: 322 -FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
             + +   + + S +TE Y  LIS+  G G+ ++++ I
Sbjct: 125 PQLALEAAAMVRSGFTEPY--LISARDGGGVADMLDDI 160


>gi|122702677|emb|CAL88528.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|291544296|emb|CBL17405.1| iron-only hydrogenase maturation protein HydF [Ruminococcus sp.
           18P13]
          Length = 390

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 25/149 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I   G  NAGKSSL NA+  + +AIV+D PGTT D ++  ++L   G ++ I DTAG+ +
Sbjct: 14  IAFFGKRNAGKSSLMNAVTNQPMAIVSDTPGTTTDPVSKAMELLPLGPVLMI-DTAGLDD 72

Query: 280 TDDIVEK------EGIKRTFLEV------ENADLI--LLLKEINSKKEISFPKNIDFIFI 325
           T ++  +      + +++T L +      E  D+I   LL+++NS       ++I ++ +
Sbjct: 73  TGELGSQRVHKSMQVMRKTDLAILVTNGAEPLDVIELALLEQLNS-------RSIPYVLV 125

Query: 326 GTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
             K DL      E    +S+ TGEG++ L
Sbjct: 126 RNKCDLTDRRDGE-GVFVSARTGEGIDAL 153


>gi|289579295|ref|YP_003477922.1| small GTP-binding protein [Thermoanaerobacter italicus Ab9]
 gi|289529008|gb|ADD03360.1| small GTP-binding protein [Thermoanaerobacter italicus Ab9]
          Length = 408

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 13/127 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I G  NAGKSSL NAL  ++VA+V+D+ GTT D ++  ++ L    V I DTAG+ +T
Sbjct: 12  IAIFGRRNAGKSSLINALTNQEVALVSDVAGTTTDPVSKAMEILPIGPVVIIDTAGLDDT 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIGTKSDL 331
            ++ E   +K+T+  +   DL +L+          E N  K I   KNI  + +  K DL
Sbjct: 72  GELGELR-VKKTYEVLNRTDLAILVIDGTIGLSEFEENVLKVIR-DKNIPVVGVINKKDL 129

Query: 332 YSTYTEE 338
            S Y+EE
Sbjct: 130 -SQYSEE 135


>gi|148377384|ref|YP_001256260.1| GTP-binding protein Era [Mycoplasma agalactiae PG2]
 gi|226741223|sp|A5IXQ6|ERA_MYCAP RecName: Full=GTPase Era
 gi|148291430|emb|CAL58815.1| GTP binding protein era [Mycoplasma agalactiae PG2]
          Length = 290

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSL N + K D+AIV+++P TTRD +      +GY     DT GI +  
Sbjct: 6   ISILGRPNVGKSSLLNKIIKYDLAIVSNVPQTTRDQIMGVYTEDGYQFVFVDTPGIHKPL 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
           +++ +   K  F  +++ D +L L  +N
Sbjct: 66  NLLGESLNKEAFSSLKDIDCVLFLSPVN 93


>gi|239997025|ref|ZP_04717549.1| GTP-binding protein EngA [Alteromonas macleodii ATCC 27126]
          Length = 481

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 195 KLAIVGKPNVGKSTLTNRILGEERVVVFDMPGTTRDSVYIPMERDEREYILIDTAGVRKR 254

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  I +T   +E A+++LL+  I++++ I+
Sbjct: 255 KKISEAVEKFSIVKTLQAIEEANVVLLV--IDAREGIT 290



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD        E     + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTNTRDALVADYPGLTRDRKYGQAKFEKRQFIVVDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++ E  +++ L +E AD++L L
Sbjct: 65  EGIDAEMAQQSLLAIEEADVVLFL 88


>gi|257066409|ref|YP_003152665.1| small GTP-binding protein [Anaerococcus prevotii DSM 20548]
 gi|256798289|gb|ACV28944.1| small GTP-binding protein [Anaerococcus prevotii DSM 20548]
          Length = 439

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I +  +I I+G  NAGKSSL N L  ++  IVTDI GTTRD +        +   + DTA
Sbjct: 172 IEDETRIAIIGKPNAGKSSLVNLLLNEERMIVTDIAGTTRDAVDSYWQYNDHNYVLIDTA 231

Query: 276 GIRETDDI---VEKEGIKRTFLEVENADLILLLKEIN 309
           G+R    +   VE    +RTF  V+++++ L L + N
Sbjct: 232 GLRRKSKVKENVEYYANQRTFDAVDSSEICLFLIDAN 268



 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 32/166 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKS+LFN L  K  +I  DI G TRD +   ++ +     + DT G+    
Sbjct: 6   VTLVGRTNVGKSTLFNRLVGKRKSITEDISGVTRDRIVDKVEWQNKEFLLVDTGGL---- 61

Query: 282 DIVEKEGIKRTF-LEVENA----DLILLLKEINSKKEISFPKNIDF-----------IFI 325
           DI  KE +      +VE A    +LIL +  ++ K+ ++ P ++D            I +
Sbjct: 62  DISNKEVMNTEIKAQVEKALIETNLILFV--VDGKEGVN-PYDVDIANEIRKYNKPVIIV 118

Query: 326 GTK-------SDLYSTYTEEYDH--LISSFTGEGLEELINKIKSIL 362
             K        D+Y  Y   +D   +IS+   +GL +L++KI S +
Sbjct: 119 ANKLDSFKIPDDIYDFYQFGFDDMSMISAEQSKGLGDLLDKIVSFI 164


>gi|218960708|ref|YP_001740483.1| GTP-binding protein [Candidatus Cloacamonas acidaminovorans]
 gi|167729365|emb|CAO80276.1| GTP-binding protein [Candidatus Cloacamonas acidaminovorans]
          Length = 449

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 22/161 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           Y + I+G  N GKS+LFN L +K  AIV    G TRD    D++  G + K+ DT GI  
Sbjct: 4   YIVSIVGRPNVGKSTLFNRLCRKRSAIVDFEAGITRDRKYEDVEWNGKIFKLVDTGGIVF 63

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD 330
            + + ++K  + +  L ++ +DLI+ + +  +      KEI+   +P     + +  K+D
Sbjct: 64  NSIETIDKMVLHQVMLAIDESDLIIFMVDAQTGTTDIDKEIAKILYPHKDKVMLVANKAD 123

Query: 331 LYSTYTEEYDHLISSF-------------TGEGLEELINKI 358
                 E YD L   F             TG+ L+ +I +I
Sbjct: 124 NEKYEWEVYDFLQLGFGDVIPISASQGRNTGDFLDAVIERI 164



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSS+ N L      IVT+IPGTTRD +            + DTAG+R  
Sbjct: 181 RIAVVGKPNVGKSSIVNLLLGNPKLIVTEIPGTTRDAIDSPFRYHNKDYILIDTAGLRRK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VE     RT   ++  D+++L+
Sbjct: 241 TRVNYGVEYFSTLRTIEAIDRCDIVVLV 268


>gi|122702177|emb|CAL88279.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|76789443|ref|YP_328529.1| GTP-binding protein EngA [Chlamydia trachomatis A/HAR-13]
 gi|237803133|ref|YP_002888327.1| GTP-binding protein EngA [Chlamydia trachomatis B/Jali20/OT]
 gi|237805054|ref|YP_002889208.1| GTP-binding protein EngA [Chlamydia trachomatis B/TZ1A828/OT]
 gi|123606653|sp|Q3KKZ1|DER_CHLTA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|76167973|gb|AAX50981.1| GTP-binding protein [Chlamydia trachomatis A/HAR-13]
 gi|231273354|emb|CAX10269.1| GTP-binding protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274367|emb|CAX11162.1| GTP-binding protein [Chlamydia trachomatis B/Jali20/OT]
          Length = 490

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++Q      +    K+ ++GH N GKSS+ NAL K++  I  + PGTTRD + +      
Sbjct: 214 VAQTATPAPVDRPLKVALIGHPNVGKSSIINALLKEERCITDNSPGTTRDNIDVAYTHNN 273

Query: 267 YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
                 DTAG+R+T  I   VE     RT   +   D+ LL+  I++ +++S+
Sbjct: 274 KEYVFIDTAGLRKTKSIKNSVEWMSSSRTEKAISRTDICLLV--IDATQQLSY 324



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           +I ILG  N GKSSLFN L K+ +AIV    GTTRD L  ++     ++ + DT G+ +E
Sbjct: 2   RIAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGEIRAWDSIIHVIDTGGVDQE 61

Query: 280 TDDIVEKE 287
           + D  +K+
Sbjct: 62  STDRFQKQ 69


>gi|160331570|ref|XP_001712492.1| engA [Hemiselmis andersenii]
 gi|159765940|gb|ABW98167.1| engA [Hemiselmis andersenii]
          Length = 519

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 9/92 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG----YLVKISDTAG 276
           K+ I+G  N GKSS+ N L  K  AIV+DIPGTTRD  + D  + G     +  + DTAG
Sbjct: 256 KVAIIGKPNVGKSSILNFLTNKKRAIVSDIPGTTRD--SCDSFISGGSNSNIYNLIDTAG 313

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           IR+   I    E   I RTF  ++  D +L +
Sbjct: 314 IRKKKMIEYGPEFFMINRTFKAIQKCDCVLFV 345


>gi|312898938|ref|ZP_07758326.1| ribosome-associated GTPase EngA [Megasphaera micronuciformis F0359]
 gi|310620100|gb|EFQ03672.1| ribosome-associated GTPase EngA [Megasphaera micronuciformis F0359]
          Length = 442

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L +++ SHI +  + E   +   I ++G  N GKSSL NAL  K+  IV+D+ GTTRD +
Sbjct: 157 LLDEVLSHIKEVPVQEDDESVVHIALVGRPNVGKSSLTNALLGKERVIVSDMAGTTRDSI 216

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
                 +G    + DTAG+R    I   VE+  + R    ++ +D+ +L+
Sbjct: 217 DTHWKHDGTEFVLIDTAGMRRKGKIDLPVERYSVVRALRAIDRSDVAVLV 266



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + ++G  N GKS+LFNA+ KK ++IV D+PG TRD +  D +  G    + DT GI   +
Sbjct: 6   VAVVGRPNVGKSTLFNAIVKKRISIVEDLPGVTRDRIYFDAEWLGREFTLIDTGGIEFVD 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           +D+ +      +  L +  AD+IL +
Sbjct: 66  SDNNIFTSMRYQAELAIHEADVILYV 91


>gi|295111440|emb|CBL28190.1| iron-only hydrogenase maturation protein HydF [Synergistetes
           bacterium SGP1]
          Length = 407

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 76/163 (46%), Gaps = 34/163 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-------------VLTID---LDLE 265
           +   G  NAGKSSL NA+  +D++IV+D+ GTT D             VL ID   LD E
Sbjct: 14  VAFFGVRNAGKSSLVNAVTGQDLSIVSDVGGTTTDPVRKAMELLPLGPVLIIDTPGLDDE 73

Query: 266 GYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322
           G L  +     +R   ETD  V     +R   E  +  L+ LLKE          + I F
Sbjct: 74  GALGALRVERTLRILAETDAAVLAADARRPLTE-HDHRLLALLKE----------RAIPF 122

Query: 323 IFIGTKSDLYSTYTEE---YDHL-ISSFTGEGLEELINKIKSI 361
           +   TK+DL           D L +S+ TGE +EEL  +I ++
Sbjct: 123 LIARTKADLLRPEERPAPGRDELCVSAVTGENVEELKERIAAL 165


>gi|292806422|gb|ADE42341.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|119357805|ref|YP_912449.1| GTP-binding protein EngA [Chlorobium phaeobacteroides DSM 266]
 gi|166224325|sp|A1BHZ8|DER_CHLPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|119355154|gb|ABL66025.1| small GTP-binding protein [Chlorobium phaeobacteroides DSM 266]
          Length = 437

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 23/169 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS LFN + ++  AIV   PG TRD      + +G    + DT G     
Sbjct: 5   IAIVGRPNVGKSMLFNRILREKSAIVDSTPGVTRDRHISPGEWQGKQFLLMDTGGYCPEG 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS------------------KKEISFPKN---I 320
           D++    +++T + + +AD+IL L ++ S                   K+I F  N    
Sbjct: 65  DVISMAMLEQTLMAIRDADIILFLADVRSGLTYDDLEISKLLQRTFQHKQIFFAVNKVET 124

Query: 321 DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             + I  +S + + +T+ Y   +S+  G G+ EL++ +   L  + K+L
Sbjct: 125 PQLSIDAESFVSTGFTKPY--FVSARDGSGVAELLDDMLDSLPVQEKQL 171



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSS  NAL   +  IV+DIPGTTRD +      +     + DTAG+R+  
Sbjct: 180 LAVVGRPNVGKSSFVNALLGANRLIVSDIPGTTRDAIDSRFTRKKQDFVLIDTAGLRKRT 239

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            I   +E     RT   +E  D+ L++
Sbjct: 240 KIDAGIEYYSSLRTDKAIERCDVALVM 266


>gi|300087240|ref|YP_003757762.1| ribosome-associated GTPase EngA [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299526973|gb|ADJ25441.1| ribosome-associated GTPase EngA [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 439

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 31/179 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA---GI 277
           +I I G +N GKSSL N L  +D AIV+ +PGTTRD +   +D     V + DTA     
Sbjct: 180 RIAIAGRANVGKSSLLNTLVGEDRAIVSPVPGTTRDAVDTPIDFGTGGVVLIDTAGIRRR 239

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKS 329
              +  VE+  + R+   ++ AD++L++ +               +  K    I +  KS
Sbjct: 240 GRIERGVEEYSVIRSLHAIDRADVVLIVLDAGEPATAQDTHIAGYAREKCRGLILVVNKS 299

Query: 330 DL------------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
           DL                  +  Y  + +  +S+ +GEG++++I     +   + +++P
Sbjct: 300 DLLKEVDMAEFDKNMASRFKFIPYARQIN--VSALSGEGVDKIIPAAFEVQQERTRRIP 356



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 19/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS+L N L  +  AI  D+PGTTRD + + +   G    + DT G+   +
Sbjct: 7   VAIVGRQNVGKSTLLNRLTGRRQAITQDLPGTTRDRMYVPVSHSGREFLLVDTGGMAGGD 66

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS-----FPKNIDFIFIGTKS 329
           T D+      ++  + +  A +I+ L E         +EI+       K +  +     +
Sbjct: 67  TGDVFTPAVNEQVRIAMREASVIVFLTEARFGLTPQDEEIAEEVRRSSKPVILVVNKVDN 126

Query: 330 DLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSIL 362
           D    +  E+  L       +S++ G G + L++++  +L
Sbjct: 127 DRQGHHAIEFHALGMGEPVPVSAYHGRGTDALLDRVVELL 166


>gi|15605436|ref|NP_220222.1| GTP-binding protein EngA [Chlamydia trachomatis D/UW-3/CX]
 gi|255311532|ref|ZP_05354102.1| GTP-binding protein EngA [Chlamydia trachomatis 6276]
 gi|255317833|ref|ZP_05359079.1| GTP-binding protein EngA [Chlamydia trachomatis 6276s]
 gi|255349095|ref|ZP_05381102.1| GTP-binding protein EngA [Chlamydia trachomatis 70]
 gi|255503632|ref|ZP_05382022.1| GTP-binding protein EngA [Chlamydia trachomatis 70s]
 gi|255507311|ref|ZP_05382950.1| GTP-binding protein EngA [Chlamydia trachomatis D(s)2923]
 gi|8134429|sp|O84709|DER_CHLTR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|3329158|gb|AAC68298.1| GTPase/GTP-binding protein [Chlamydia trachomatis D/UW-3/CX]
 gi|289525747|emb|CBJ15228.1| GTP-binding protein [Chlamydia trachomatis Sweden2]
 gi|296435319|gb|ADH17497.1| GTP-binding protein EngA [Chlamydia trachomatis E/150]
 gi|296436247|gb|ADH18421.1| GTP-binding protein EngA [Chlamydia trachomatis G/9768]
 gi|296437176|gb|ADH19346.1| GTP-binding protein EngA [Chlamydia trachomatis G/11222]
 gi|296438107|gb|ADH20268.1| GTP-binding protein EngA [Chlamydia trachomatis G/11074]
 gi|296439036|gb|ADH21189.1| GTP-binding protein EngA [Chlamydia trachomatis E/11023]
 gi|297140608|gb|ADH97366.1| GTP-binding protein EngA [Chlamydia trachomatis G/9301]
 gi|297748834|gb|ADI51380.1| GTP-binding protein [Chlamydia trachomatis D-EC]
 gi|297749714|gb|ADI52392.1| GTP-binding protein [Chlamydia trachomatis D-LC]
          Length = 490

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++Q      +    K+ ++GH N GKSS+ NAL K++  I  + PGTTRD + +      
Sbjct: 214 VAQTATPAPVDRPLKVALIGHPNVGKSSIINALLKEERCITDNSPGTTRDNIDVAYTHNN 273

Query: 267 YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
                 DTAG+R+T  I   VE     RT   +   D+ LL+  I++ +++S+
Sbjct: 274 KEYVFIDTAGLRKTKSIKNSVEWMSSSRTEKAISRTDICLLV--IDATQQLSY 324



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           +I ILG  N GKSSLFN L K+ +AIV    GTTRD L  ++     ++ + DT G+ +E
Sbjct: 2   RIAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGEIRAWDSIIHVIDTGGVDQE 61

Query: 280 TDDIVEKE 287
           + D  +K+
Sbjct: 62  STDRFQKQ 69


>gi|329121290|ref|ZP_08249917.1| ribosome-associated GTPase EngA [Dialister micraerophilus DSM
           19965]
 gi|327470224|gb|EGF15687.1| ribosome-associated GTPase EngA [Dialister micraerophilus DSM
           19965]
          Length = 443

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 10/93 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGI- 277
           + I+G  N GKS++ N LA+K V+IV D+PG TRD +  D   LD E  L+   DT GI 
Sbjct: 6   VAIVGRPNVGKSTIINGLAQKRVSIVEDLPGVTRDRIYCDAQWLDREFTLI---DTGGIE 62

Query: 278 -RETDDIVEKEGIK-RTFLEVENADLILLLKEI 308
            RE  D +  +GI+ +  L +E AD+IL + ++
Sbjct: 63  FREEADQIS-DGIRMQAQLAIEEADVILFVTDV 94



 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +  I+G  N GKS+L N+L   + ++V D  GTTRD +      +G    + DTAG+R  
Sbjct: 178 RTAIVGRPNVGKSTLVNSLLGYERSLVADEMGTTRDAIDSLWTHKGKKFVLVDTAGMRKK 237

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + D+ +EK  + R+   +++ D+ + +
Sbjct: 238 NKIDEPLEKYSVIRSIRAIDDCDVAVFV 265


>gi|218245012|ref|YP_002370383.1| GTP-binding protein EngA [Cyanothece sp. PCC 8801]
 gi|257058036|ref|YP_003135924.1| GTP-binding protein EngA [Cyanothece sp. PCC 8802]
 gi|226741133|sp|B7K1S0|DER_CYAP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|218165490|gb|ACK64227.1| small GTP-binding protein [Cyanothece sp. PCC 8801]
 gi|256588202|gb|ACU99088.1| small GTP-binding protein [Cyanothece sp. PCC 8802]
          Length = 452

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSL NAL  ++ AIV+ I GTTRD +   +       ++ DTAGIR  
Sbjct: 178 KVAIIGRPNVGKSSLLNALLGENRAIVSPISGTTRDAIDTVIQHNEQTYRLIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
            ++    E   I R F  +   D++L +
Sbjct: 238 KNVEYGAEFFSINRAFKAIRRCDVVLFV 265



 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LA    AIV D PG TRD        +    +I DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLANRLAGDQHAIVHDEPGITRDRTYRPGFWQDRDFQIVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|166154045|ref|YP_001654163.1| GTP-binding protein EngA [Chlamydia trachomatis 434/Bu]
 gi|166154920|ref|YP_001653175.1| GTP-binding protein EngA [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335246|ref|ZP_07223490.1| GTP-binding protein EngA [Chlamydia trachomatis L2tet1]
 gi|238687413|sp|B0BAF8|DER_CHLTB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238687426|sp|B0B8S9|DER_CHLT2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|165930033|emb|CAP03516.1| GTP-binding protein [Chlamydia trachomatis 434/Bu]
 gi|165930908|emb|CAP06470.1| GTP-binding protein [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 490

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++Q      +    K+ ++GH N GKSS+ NAL K++  I  + PGTTRD + +      
Sbjct: 214 VAQTATPAPVDRPLKVALIGHPNVGKSSIINALLKEERCITDNSPGTTRDNIDVAYTHNN 273

Query: 267 YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
                 DTAG+R+T  I   VE     RT   +   D+ LL+  I++ +++S+
Sbjct: 274 KEYVFIDTAGLRKTKSIKNSVEWMSSSRTEKAISRTDICLLV--IDATQQLSY 324



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           +I ILG  N GKSSLFN L ++ +AIV    GTTRD L  ++     ++ + DT G+ +E
Sbjct: 2   RIAILGRPNVGKSSLFNRLCRRSLAIVNSQEGTTRDRLYGEIRAWDSIIHVIDTGGVDQE 61

Query: 280 TDDIVEKE 287
           + D  +K+
Sbjct: 62  STDRFQKQ 69


>gi|21674598|ref|NP_662663.1| GTP-binding protein EngA [Chlorobium tepidum TLS]
 gi|26006711|sp|Q8KBK3|DER_CHLTE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|21647797|gb|AAM73005.1| GTP-binding protein [Chlorobium tepidum TLS]
          Length = 437

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ +LG  N GKSSL NAL   +  IV+D+PGTTRD +   L   G    + DTAG+R+ 
Sbjct: 179 KLAVLGRPNVGKSSLVNALLGTERHIVSDVPGTTRDAIDSVLKRNGEEYVLIDTAGLRKR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E     RT   +E  D+ L+L
Sbjct: 239 TKIDAGIEFYSSLRTARAIERCDVALVL 266



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 27/160 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + ++  AIV   PG TRD      + +G    + DT G    +
Sbjct: 5   IALVGRPNVGKSTLFNRILRQKSAIVDPTPGVTRDRHISPGEWQGKQFLLMDTGGYAPEN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKS 329
           D + K  +++T   +E+AD ++ +  ++++  +++             K+    F+  K 
Sbjct: 65  DTLSKAMLEQTMRAIEDADAVIFI--VDARSGLTYLDLDIAKILQKTFKDKKIFFVANKV 122

Query: 330 D-----------LYSTYTEEYDHLISSFTGEGLEELINKI 358
           D           + S +TE Y  LIS+  G G+ +++  +
Sbjct: 123 DNPQVALEAQSLVKSGFTEPY--LISARDGAGVADMLEDV 160


>gi|313892548|ref|ZP_07826135.1| ribosome biogenesis GTPase Der [Dialister microaerophilus UPII
           345-E]
 gi|313118945|gb|EFR42150.1| ribosome biogenesis GTPase Der [Dialister microaerophilus UPII
           345-E]
          Length = 443

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 10/93 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGI- 277
           + I+G  N GKS++ N LA+K V+IV D+PG TRD +  D   LD E  L+   DT GI 
Sbjct: 6   VAIVGRPNVGKSTIINGLAQKRVSIVEDLPGVTRDRIYCDAQWLDREFTLI---DTGGIE 62

Query: 278 -RETDDIVEKEGIK-RTFLEVENADLILLLKEI 308
            RE  D +  +GI+ +  L +E AD+IL + ++
Sbjct: 63  FREEADQIS-DGIRMQAQLAIEEADVILFVTDV 94



 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  I+G  N GKS+L N+L   + ++V D  GTTRD +      +G    + DTAG+R+ 
Sbjct: 178 RTAIVGRPNVGKSTLVNSLLGYERSLVADEMGTTRDAIDSLWTHKGKKFVLVDTAGMRKK 237

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305
              D+ +EK  + R+   +++ D+ + +
Sbjct: 238 NKIDEPLEKYSVIRSIRAIDDCDVAVFV 265


>gi|288803890|ref|ZP_06409315.1| ribosome-associated GTPase EngA [Prevotella melaninogenica D18]
 gi|288333655|gb|EFC72105.1| ribosome-associated GTPase EngA [Prevotella melaninogenica D18]
          Length = 437

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    I DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSIVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI E    K+  +  E ADL+L +
Sbjct: 65  DDIFEDAIRKQVLVATEEADLVLFV 89



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +       G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+++ +L+
Sbjct: 237 NKVSEDLEFYSVMRSIRSIENSEVCILM 264


>gi|260893107|ref|YP_003239204.1| small GTP-binding protein [Ammonifex degensii KC4]
 gi|260865248|gb|ACX52354.1| small GTP-binding protein [Ammonifex degensii KC4]
          Length = 425

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 6/87 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I + G  NAGKSSL NAL  ++VAIV+D+PGTT D +   ++ L    V I DTAGI   
Sbjct: 14  IALFGRRNAGKSSLINALTGQEVAIVSDVPGTTTDPVAKAMEILPLGPVMIIDTAGI--- 70

Query: 281 DDIVEKEG--IKRTFLEVENADLILLL 305
           DD+ E     +K++F  +   DL LL+
Sbjct: 71  DDVGELGALRVKKSFEVLNRTDLALLV 97


>gi|321311009|ref|YP_004193338.1| GTP binding protein EngA [Mycoplasma haemofelis str. Langford 1]
 gi|319802853|emb|CBY93499.1| GTP binding protein EngA [Mycoplasma haemofelis str. Langford 1]
          Length = 436

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 12/145 (8%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   I SH+ + ++ E      KI I+G  N GKSSL N+L K++  +V+++ GTTRD +
Sbjct: 154 LLTSIVSHLGEEEIFEEEGERLKIAIIGRPNVGKSSLVNSLLKRERVLVSEVAGTTRDAI 213

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA-----DLILLLKEINSKKE 313
            +D    G    + DT GI+    +   E  K + L  + A      LI +L       E
Sbjct: 214 DLDFSFNGKRYTLIDTPGIKRHSQMRVDEKEKYSVLRAQKAIARANTLIFMLDISEDLSE 273

Query: 314 IS-------FPKNIDFIFIGTKSDL 331
           +        F  NI  + +  K DL
Sbjct: 274 LDERVGGLIFKANIPTLIVANKWDL 298



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +VI+G  N GKS LFN L  +  A+V   PG TRD +T++         ++DT G    +
Sbjct: 6   VVIIGKPNVGKSQLFNRLVGERHAVVFSEPGVTRDRITLECSWLHRSFLLTDTGGYTLDN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              ++E  ++T + ++ ADLIL L
Sbjct: 66  YSFQQEINRQTEIALKEADLILFL 89


>gi|254458756|ref|ZP_05072180.1| GTPase family protein [Campylobacterales bacterium GD 1]
 gi|207084522|gb|EDZ61810.1| GTPase family protein [Campylobacterales bacterium GD 1]
          Length = 496

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 2/90 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  KI I+G +N GKSSL NAL  ++ ++V+ + GTT D +   +D +G  +   DTAG+
Sbjct: 235 NHIKIAIIGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDETIDYKGKQLTFVDTAGL 294

Query: 278 RETDDI--VEKEGIKRTFLEVENADLILLL 305
           R    I  +EK  + RT   ++N+++ L++
Sbjct: 295 RRRGKILGIEKYALMRTTEMLDNSNMALIV 324



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 3/86 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSLFN L KK  AI +DI GTTRDV   +  +    V++ DT G+ + 
Sbjct: 3   KIAIIGRPNVGKSSLFNRLVKKRDAITSDIAGTTRDVKRRNTVIINKEVELLDTGGLDKG 62

Query: 281 DDIVEKEGIKRTFLEVE-NADLILLL 305
            ++ +K  IK   L+    AD+IL +
Sbjct: 63  CELFDK--IKEMSLKAAYKADIILYM 86


>gi|67922213|ref|ZP_00515727.1| Small GTP-binding protein domain:GTP-binding [Crocosphaera watsonii
           WH 8501]
 gi|67855916|gb|EAM51161.1| Small GTP-binding protein domain:GTP-binding [Crocosphaera watsonii
           WH 8501]
          Length = 465

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + I+G  N GKSSL NA   K  AIV+ I GTTRD +   ++      ++ DTAG
Sbjct: 187 REEINVSIIGRPNVGKSSLLNAFLGKKRAIVSPISGTTRDAIDTVVERGEKTYRLIDTAG 246

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           IR   ++    E   I R F  +  AD++LL+
Sbjct: 247 IRRKKNVNYGAEFFSINRAFKAIRRADVVLLV 278



 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + I+G  N GKS+  N LAK   AIV D PG TRD
Sbjct: 19  VAIIGRPNVGKSTFVNRLAKDRQAIVHDEPGITRD 53


>gi|154149467|ref|YP_001405674.1| GTP-binding protein EngA [Campylobacter hominis ATCC BAA-381]
 gi|166224322|sp|A7HZI3|DER_CAMHC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|153805476|gb|ABS52483.1| GTP-binding protein EngA [Campylobacter hominis ATCC BAA-381]
          Length = 460

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSL NAL K++ A+V+++ GTT D +  +      +++  DTAGIR+ 
Sbjct: 200 KVGIIGRVNVGKSSLLNALVKENRAVVSEVAGTTIDPVNENYTFNDKVIEFVDTAGIRKR 259

Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305
             I  +EK  + RT   +E  D+ L++
Sbjct: 260 GKIEGIEKFALNRTEKILEQCDIALMV 286



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++++G  N GKSSLFN    K +AI +DI GTTRD     +++      + D+ G+ ++
Sbjct: 3   KVILIGRPNVGKSSLFNRFVGKRIAITSDISGTTRDTNKTVIEIFDKKCILIDSGGLDDS 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            ++  K   K T  EV N D+IL +
Sbjct: 63  SEMFAKVQAK-TLKEVRNCDIILFI 86


>gi|114332129|ref|YP_748351.1| GTP-binding protein EngA [Nitrosomonas eutropha C91]
 gi|122313190|sp|Q0AE46|DER_NITEC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|114309143|gb|ABI60386.1| small GTP-binding protein [Nitrosomonas eutropha C91]
          Length = 468

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I G  N GKS+L N L  ++  I  D PGTTRD + ID +       + DTAG+R + 
Sbjct: 181 IAIAGRPNVGKSTLINTLLGEERMIAFDQPGTTRDSIYIDFEYGQRRYTLIDTAGLRRSG 240

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEINS 310
            +   VEK  + +T   +E A++++L+ +  S
Sbjct: 241 KVWETVEKFSVVKTLQSIEAANVVVLVLDAQS 272



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 34/161 (21%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID--LDLEGYLVKISDTAGIRE 279
           +V++G  N GKS+LFN L +   AIV DIPG TRD       L L+ YLV   DT G   
Sbjct: 5   LVLVGRPNVGKSTLFNRLTRSRDAIVADIPGLTRDRHYGHGRLGLKPYLV--VDTGGF-- 60

Query: 280 TDDIVEKEGI-----KRTFLEVENADLILLLKEINSKKEISFPKNI----------DFIF 324
             + V K GI     ++T   V+ AD++L +  ++ ++ ++    I            I 
Sbjct: 61  --EPVVKSGILHAMARQTLQAVDEADVVLFI--VDGRQGLASQDKIIADQLRKTGRKIIL 116

Query: 325 IGTKSD--LYSTYTEEYDHL-------ISSFTGEGLEELIN 356
           +  K++   YST   E+  L       +S+  GE L ELI+
Sbjct: 117 VVNKAEGMPYSTAAVEFHELGLGTPCVVSALHGEHLGELID 157


>gi|260753034|ref|YP_003225927.1| GTP-binding protein EngA [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552397|gb|ACV75343.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 454

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N L   D  I     G TRD + ID   +G  V++ DTAG+R+ 
Sbjct: 191 QLAIVGRPNAGKSTLINRLIGVDRMITGPEAGITRDSIAIDWSWQGRPVRLIDTAGLRKK 250

Query: 281 DDIV---EKEGIKRTFLEVENADLILLL 305
             +V   E+  +  TF  ++ A++++LL
Sbjct: 251 ARVVDKMERLSVMDTFRTIDYAEVVVLL 278



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD    D +L G   ++ DTAG  E +
Sbjct: 4   VAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDAELIGMPFRVIDTAGF-EDE 62

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           D     G  R   E    +  + L  I++++ I+
Sbjct: 63  DPASLPGRMRVQTEAAVKECDVALFVIDARQGIT 96


>gi|255326187|ref|ZP_05367273.1| ribosome-associated GTPase EngA [Rothia mucilaginosa ATCC 25296]
 gi|255296641|gb|EET75972.1| ribosome-associated GTPase EngA [Rothia mucilaginosa ATCC 25296]
          Length = 526

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           + L++IL    ++    SQ    E +    ++ ++G  N GKSSL N LA  + A+V D+
Sbjct: 225 DALDEIL----EVMPEHSQFAQPEALGGPRRVALVGRPNVGKSSLLNKLAGSERAVVNDL 280

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            GTTRD +   ++L GY  +  DTAGIR
Sbjct: 281 AGTTRDPIDEIIELGGYPWRFVDTAGIR 308



 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKS++ N +  +  A+V D PG TRD ++   +  G    + DT G
Sbjct: 77  VAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWLGKSFTLVDTGG 131


>gi|167039341|ref|YP_001662326.1| small GTP-binding protein [Thermoanaerobacter sp. X514]
 gi|256752341|ref|ZP_05493202.1| small GTP-binding protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913981|ref|ZP_07131298.1| small GTP-binding protein [Thermoanaerobacter sp. X561]
 gi|307725336|ref|YP_003905087.1| small GTP-binding protein [Thermoanaerobacter sp. X513]
 gi|166853581|gb|ABY91990.1| small GTP-binding protein [Thermoanaerobacter sp. X514]
 gi|256748752|gb|EEU61795.1| small GTP-binding protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890666|gb|EFK85811.1| small GTP-binding protein [Thermoanaerobacter sp. X561]
 gi|307582397|gb|ADN55796.1| small GTP-binding protein [Thermoanaerobacter sp. X513]
          Length = 408

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 11/126 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I G  NAGKSSL NAL  ++VA+V+D+ GTT D ++  ++ L    V I DTAG+ +T
Sbjct: 12  IAIFGRRNAGKSSLINALTNQEVALVSDVAGTTTDPVSKAMEILPIGPVVIIDTAGLDDT 71

Query: 281 DDIVEKEGIKRTFLEVENADLILL-------LKEINSKK-EISFPKNIDFIFIGTKSDLY 332
            ++ E   +K+T+  +   DL +L       L E      +I   KNI  + +  K DL 
Sbjct: 72  GELGELR-VKKTYEVLNRTDLAILVIDGTIGLSEFEENVLKIIRDKNIPVVGVINKKDL- 129

Query: 333 STYTEE 338
           S Y+EE
Sbjct: 130 SQYSEE 135


>gi|167036672|ref|YP_001664250.1| small GTP-binding protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115099|ref|YP_004185258.1| small GTP-binding protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855506|gb|ABY93914.1| small GTP-binding protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928190|gb|ADV78875.1| small GTP-binding protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 408

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 11/126 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I G  NAGKSSL NAL  ++VA+V+D+ GTT D ++  ++ L    V I DTAG+ +T
Sbjct: 12  IAIFGRRNAGKSSLINALTNQEVALVSDVAGTTTDPVSKAMEILPIGPVVIIDTAGLDDT 71

Query: 281 DDIVEKEGIKRTFLEVENADLILL-------LKEINSKK-EISFPKNIDFIFIGTKSDLY 332
            ++ E   +K+T+  +   DL +L       L E      +I   KNI  + +  K DL 
Sbjct: 72  GELGELR-VKKTYEVLNRTDLAILVIDGTIGLSEFEENVLKIIRDKNIPVVGVINKKDL- 129

Query: 333 STYTEE 338
           S Y+EE
Sbjct: 130 SQYSEE 135


>gi|50365015|ref|YP_053440.1| GTP-binding protein EngA [Mesoplasma florum L1]
 gi|81695689|sp|Q6F1R7|DER_MESFL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|50363571|gb|AAT75556.1| GTP-binding protein, cell cycle control [Mesoplasma florum L1]
          Length = 435

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  ++ I+G  N GKSSL N+L  ++  IV+DIPGTT D +   + +      + DTAGI
Sbjct: 173 NRTRVSIIGRPNVGKSSLVNSLIGEERMIVSDIPGTTLDAVDSVVKVNNIEYTLIDTAGI 232

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R+   I   VEK    R+   +  +D++LL+
Sbjct: 233 RKKSKIFQNVEKYSYLRSLTTINGSDVVLLM 263



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN + ++  +IV D PG TRD +    +       + DT GI   D
Sbjct: 6   VAIVGRPNVGKSSLFNRIIREKKSIVEDTPGVTRDRIYGTAEWLTREFIVIDTGGITLED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               KE   +  + +E AD+I+ L
Sbjct: 66  QPFAKEIKVQAEIAMEEADVIVFL 89


>gi|319407564|emb|CBI81214.1| GTP-binding protein [Bartonella sp. 1-1C]
          Length = 477

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 23/183 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  + +A+V D PG TRD       L+     + DTAG+ E D
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRRIHSAKLQDLHFDVIDTAGLEEAD 64

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNI-----DFIFIGTKSDLY 332
           +  +E     +T + ++ ADLIL + +  S   + ++ F   I       + +  KS+  
Sbjct: 65  NHTLEGRMRAQTKIAIDEADLILFVLDAKSGITRSDLDFSSLIRKSGKPIVLVSNKSESK 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYH 382
                EY+           IS+  G GL +L + I  +I ++K     F++   K   Y 
Sbjct: 125 IAIAGEYEAWSLGLGEPCPISAEHGHGLSDLRDAIVAAIGADKV----FNLRQEKEKTYT 180

Query: 383 LSQ 385
            +Q
Sbjct: 181 TTQ 183



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS+L N++ K+D  +     G TRD +++D +     +K+ DTAG+R  
Sbjct: 208 RIAVIGRPNTGKSTLINSMLKQDRLLTGPEAGITRDSISVDWEWNNRRIKLFDTAGLRRK 267

Query: 281 DDIVEK 286
             + EK
Sbjct: 268 SKVQEK 273


>gi|313683277|ref|YP_004061015.1| ribosome-associated GTPase enga [Sulfuricurvum kujiense DSM 16994]
 gi|313156137|gb|ADR34815.1| ribosome-associated GTPase EngA [Sulfuricurvum kujiense DSM 16994]
          Length = 511

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  K+ I+G  N GKSSL NAL  +D ++V+ + GTT D +   ++     +   DTAGI
Sbjct: 238 NQMKVAIIGRVNVGKSSLLNALLGEDRSVVSSVAGTTIDPIDETVEYNDKKITFIDTAGI 297

Query: 278 RETDDI--VEKEGIKRTFLEVENADLILLL 305
           R+   I  +EK  + RT   +E AD+ LL+
Sbjct: 298 RKRGKILGIEKYALMRTEEMLETADIALLV 327



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 9/89 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISDTAGI 277
           K+ I+G  N GKSSLFN L K+  AI ++  GTTRDV   + + +D E   V+I DT G+
Sbjct: 3   KLAIIGRPNVGKSSLFNRLLKQRDAITSEQAGTTRDVKKRVAVVVDKE---VEILDTGGL 59

Query: 278 RETDDIVEKEGIKRTFLEVEN-ADLILLL 305
            E  ++ ++  IK   L+  + AD+IL +
Sbjct: 60  DEGCELYDR--IKEKSLKAAHEADIILFM 86


>gi|303232074|ref|ZP_07318777.1| ribosome-associated GTPase EngA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513180|gb|EFL55219.1| ribosome-associated GTPase EngA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 444

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + I+G  N GKSSL NAL  +D  IV+D+ GTTRD +            + DTAG+R   
Sbjct: 181 VAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTHWTHGDQKFVLIDTAGMRRKS 240

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           + D+ VE+  I R+   V+ +D+++L+
Sbjct: 241 KIDEAVERYSIVRSLRSVDRSDIVVLV 267



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + ++G  N GKS+LFNA+  K ++IV DIPG TRD +  D +       + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFVT 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           E   ++ K    +  L +E AD+IL +
Sbjct: 66  ENSHVIPKMMRLQAELAIEEADVILFV 92


>gi|241761000|ref|ZP_04759089.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374619|gb|EER64080.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 454

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N L   D  I     G TRD + ID   +G  V++ DTAG+R+ 
Sbjct: 191 QLAIVGRPNAGKSTLINRLIGVDRMITGPEAGITRDSIAIDWSWQGRPVRLIDTAGLRKK 250

Query: 281 DDIV---EKEGIKRTFLEVENADLILLL 305
             +V   E+  +  TF  ++ A++++LL
Sbjct: 251 ARVVDKMERLSVMDTFRTIDYAEVVVLL 278



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD    D +L G   ++ DTAG  E +
Sbjct: 4   VAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDAELIGMPFRVIDTAGF-EDE 62

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           D     G  R   E    +  + L  I++++ I+
Sbjct: 63  DPASLPGRMRVQTEAAVKECDVALFVIDARQGIT 96


>gi|148653556|ref|YP_001280649.1| GTP-binding protein EngA [Psychrobacter sp. PRwf-1]
 gi|172048545|sp|A5WGA8|DER_PSYWF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|148572640|gb|ABQ94699.1| small GTP-binding protein [Psychrobacter sp. PRwf-1]
          Length = 473

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + G K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I  +  G    + DTAG
Sbjct: 175 QGGLKLAIIGRPNVGKSTLVNRMLGEERVVVYDMPGTTRDSIYIPFERNGKNYVLIDTAG 234

Query: 277 IRET---DDIVEKEGIKRTFLEVENADLILLL 305
           +R     D+ VEK  + +    +++A++++ +
Sbjct: 235 VRRRGRIDEKVEKFSVIKALQAIKDANVVVAV 266



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN + K   A+V D+ G TRD    D         + DT GI E D
Sbjct: 7   VALIGRPNVGKSTIFNQMTKTRQALVADLSGLTRDRQYGDATYNNKSFVVIDTGGIGEAD 66

Query: 282 D 282
           D
Sbjct: 67  D 67


>gi|122701507|emb|CAL88143.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L  + V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|291320054|ref|YP_003515312.1| GTP binding protein era [Mycoplasma agalactiae]
 gi|290752383|emb|CBH40354.1| GTP binding protein era [Mycoplasma agalactiae]
          Length = 290

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSL N + K D+AIV+++P TTRD +      +GY     DT GI +  
Sbjct: 6   ISILGRPNVGKSSLLNKIIKYDLAIVSNVPQTTRDQIMGVYTEDGYQFVFVDTPGIHKPL 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
           +++ +   K  F  +++ D +L L  +N
Sbjct: 66  NLLGESLNKEAFSSLKDIDCVLFLSPVN 93


>gi|303229883|ref|ZP_07316659.1| ribosome-associated GTPase EngA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515439|gb|EFL57405.1| ribosome-associated GTPase EngA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 444

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + I+G  N GKSSL NAL  +D  IV+D+ GTTRD +            + DTAG+R   
Sbjct: 181 VAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTHWTHGDQKFVLIDTAGMRRKS 240

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           + D+ VE+  I R+   V+ +D+++L+
Sbjct: 241 KIDEAVERYSIVRSLRSVDRSDIVVLV 267



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + ++G  N GKS+LFNA+  K ++IV DIPG TRD +  D +       + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFVT 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           E   ++ K    +  L +E AD+IL +
Sbjct: 66  ENSHVIPKMMRLQAELAIEEADVILFV 92


>gi|4467661|emb|CAB37782.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 38/56 (67%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM 65


>gi|56551349|ref|YP_162188.1| GTP-binding protein EngA [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542923|gb|AAV89077.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 454

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N L   D  I     G TRD + ID   +G  V++ DTAG+R+ 
Sbjct: 191 QLAIVGRPNAGKSTLINRLIGVDRMITGPEAGITRDSIAIDWSWQGRPVRLIDTAGLRKK 250

Query: 281 DDIV---EKEGIKRTFLEVENADLILLL 305
             +V   E+  +  TF  ++ A++++LL
Sbjct: 251 ARVVDKMERLSVMDTFRTIDYAEVVVLL 278



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 36/60 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD    D +L G   ++ DTAG  + D
Sbjct: 4   VAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDAELIGMPFRVIDTAGFEDED 63


>gi|255037605|ref|YP_003088226.1| small GTP-binding protein [Dyadobacter fermentans DSM 18053]
 gi|254950361|gb|ACT95061.1| small GTP-binding protein [Dyadobacter fermentans DSM 18053]
          Length = 436

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKSS  N L   D +IVTDI GTTRD +    +  G    ++DTAGIR  
Sbjct: 178 RIAIMGRPNVGKSSFLNVLTGTDRSIVTDIAGTTRDAIHTHYNAFGMNFILTDTAGIRRK 237

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305
             +  KE I+     R+   +E +D+ ++L
Sbjct: 238 SRV--KEDIEFYSTLRSVKAMEESDVCIVL 265


>gi|327470401|gb|EGF15857.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK330]
          Length = 436

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 33/157 (21%)

Query: 214 EIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVK 270
           E+++N    K  ++G  N GKSSL NA+  +D  I + + GTTRD + T+  D EG    
Sbjct: 167 EVVKNPDMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFT 226

Query: 271 ISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT 327
           + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ I             
Sbjct: 227 MIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI------------- 271

Query: 328 KSDLYSTYTEEYDHLISSF---TGEGLEELINKIKSI 361
                     EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 ---------REYDKRIAGFAHEAGKGIVIVVNKWDTL 299



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|302846043|ref|XP_002954559.1| hypothetical protein VOLCADRAFT_121318 [Volvox carteri f.
           nagariensis]
 gi|300260231|gb|EFJ44452.1| hypothetical protein VOLCADRAFT_121318 [Volvox carteri f.
           nagariensis]
          Length = 269

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 7/91 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR-- 278
           + I+G  N GKSSL NA+A ++ +IV D+ GTTRD +   + L  G  + + DTAGIR  
Sbjct: 52  VAIVGRPNVGKSSLLNAIAGEERSIVCDLSGTTRDAVDTRVTLPGGQRLTLIDTAGIRKR 111

Query: 279 ----ETDDIVEKEGIKRTFLEVENADLILLL 305
               ++ D  E+  + R    V  AD+ +L+
Sbjct: 112 SRVADSPDGAEQLSVDRAMRAVRRADVAVLV 142


>gi|122702313|emb|CAL88347.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L  + V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|317051076|ref|YP_004112192.1| ribosome-associated GTPase EngA [Desulfurispirillum indicum S5]
 gi|316946160|gb|ADU65636.1| ribosome-associated GTPase EngA [Desulfurispirillum indicum S5]
          Length = 457

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +AKK +AIV DIPG TRD    D++ E     I DT G   ET
Sbjct: 7   VCIIGRPNVGKSTLFNRIAKKRIAIVEDIPGVTRDRNYHDVEWEDKEFTIVDTGGFESET 66

Query: 281 -DDIVEKEGIKRTFLEVENADLILLL 305
               +E   +++T +    AD ++ L
Sbjct: 67  GKGSLEASMVEQTGIAAAEADRVIFL 92



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSL N +  ++  + +++PGTTRD +   +  EG    + DTAGIR  
Sbjct: 186 KVAIVGRPNVGKSSLVNKICGENRVVASEVPGTTRDTIHTPVRREGRDFILLDTAGIRRK 245

Query: 281 DDI----VEKEGIKRTFLEVENADLILLL 305
                  +E+  + R+   +E A +++L+
Sbjct: 246 SKAYSENLERYSVFRSITAIEEAHVVILM 274


>gi|327440787|dbj|BAK17152.1| predicted GTPase [Solibacillus silvestris StLB046]
          Length = 436

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L ++ + H  Q    +   +  K  ++G  N GKSSL NA   +D  IV++I GTTRD +
Sbjct: 155 LLDECAKHFPQPDEEQYDDDTIKFSLIGRPNVGKSSLVNAFLGQDRVIVSEIQGTTRDAI 214

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
                 +G    I DTAG+R+   +    EK  + R    +E +D++L++
Sbjct: 215 DSPYSYDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVV 264



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    D   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSADWLAHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++  ++  + ++ AD+I+ +
Sbjct: 66  EPFLEQIRQQAEIAIDEADVIIFM 89


>gi|225570488|ref|ZP_03779513.1| hypothetical protein CLOHYLEM_06589 [Clostridium hylemonae DSM
           15053]
 gi|225160685|gb|EEG73304.1| hypothetical protein CLOHYLEM_06589 [Clostridium hylemonae DSM
           15053]
          Length = 442

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKSS+ N L  +   IV+D+ GTTRD +  ++   G      DTAG+R  
Sbjct: 179 RIAIVGKPNVGKSSIVNKLLGEQRVIVSDVAGTTRDAIDTEIIHGGREYVFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E+  I RT   VE AD++L++
Sbjct: 239 SKIKEELERYSIIRTVTAVERADVVLVV 266



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIR 278
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  +   LD E  L+   DT GI 
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYAEVSWLDKEFTLI---DTGGIE 62

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            E+ D++  +  ++  + ++ AD+I+ + ++  
Sbjct: 63  PESKDVILSQMREQAQIAIDTADVIVFITDVRQ 95


>gi|297559956|ref|YP_003678930.1| ribosome-associated GTPase EngA [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844404|gb|ADH66424.1| ribosome-associated GTPase EngA [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 478

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 27/177 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I +LG  N GKSSL N LA +D  +V  + GTTRD +   ++L G   K  DTAGIR  
Sbjct: 199 RIALLGRPNVGKSSLLNRLAGEDRVVVDAVAGTTRDAVDELIELGGKTWKFIDTAGIRRR 258

Query: 281 DDIVEKE---GIKRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKS 329
              ++        RT   +E A+  ++L +++   ++++I   + +       +    K 
Sbjct: 259 FRALQGADYYATMRTGTALERAEAAVVLMDVSEPLAEQDIRVVEQVVEAGRGLVLAFNKW 318

Query: 330 DL----YSTYTE-EYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           D+      TY E E D             +S+ TG  +E+L+  I++ LS   +++P
Sbjct: 319 DILDEERRTYLEKEIDRQLARVSWAPRVNVSAKTGRHMEKLVPAIETSLSGWNQRIP 375



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DIS  +  G   E       + ++G  N GKSSL N +  +  A+V D+PG TRD +  D
Sbjct: 5   DISDVVHGGADAEEPATLPVVAVVGRPNVGKSSLVNRIIGRREAVVEDVPGVTRDRVAYD 64

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            + +     + DT G   +   +     ++     + AD+IL +
Sbjct: 65  AEWQNTRFTLVDTGGWETSVSGLAAMVARQAEYAAQTADVILFV 108


>gi|295098886|emb|CBK87975.1| ribosome-associated GTPase EngA [Eubacterium cylindroides T2-87]
          Length = 329

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+ K+D  IV++I GTTRD +     ++     I DTAGIR+   I
Sbjct: 179 VIGRPNVGKSSLVNAILKEDRVIVSNIEGTTRDAIDTPFKVDDKEYMIIDTAGIRKRGKI 238

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
              +EK  I R    +E ++++L +
Sbjct: 239 YENIEKYSILRAMNAIERSNVVLFV 263



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN L  +  +IV D PG TRD +   ++       I DT GI+  D
Sbjct: 6   VAIVGRPNVGKSTIFNRLIGERKSIVDDTPGVTRDRIYGTVEWLTQSFHIIDTGGIQIED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
               +E   +  + +E AD+I+    I S KE
Sbjct: 66  QPFSEEINMQVDIAIEEADVIIF---ITSAKE 94


>gi|283770547|ref|ZP_06343439.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus H19]
 gi|283460694|gb|EFC07784.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus H19]
          Length = 436

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD +  +   EG    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYEGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   Y   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTYDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + ++ AD+I+ +
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFM 89


>gi|302383643|ref|YP_003819466.1| ribosome-associated GTPase EngA [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194271|gb|ADL01843.1| ribosome-associated GTPase EngA [Brevundimonas subvibrioides ATCC
           15264]
          Length = 537

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 63/105 (60%), Gaps = 6/105 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           K+ I+G  N GKS+LFN L  K +A+V D PG TRD    +  +    + + DTAG  + 
Sbjct: 4   KLAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRRYAEGSIGDMDLTLIDTAGYEDV 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
           +DD +E    ++T L +E+ DLIL +  +++++ ++   ++D IF
Sbjct: 64  SDDSLESRMREQTELALEDGDLILFM--MDAREGVT---SLDRIF 103



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N L  +D  +     G TRD +++D + EG  +++ DTAG+R  
Sbjct: 179 RIAIIGRPNAGKSTLINHLIGEDRLLTGPEAGITRDSISVDWEYEGQNIRLVDTAGMRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  +  T   +  A++++L+
Sbjct: 239 ARVQEKLEKLSVADTIRAITYAEVVVLV 266


>gi|282916742|ref|ZP_06324500.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus D139]
 gi|282319229|gb|EFB49581.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus D139]
          Length = 436

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD +  +   EG    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYEGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + ++ AD+I+ +
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFM 89


>gi|116515306|ref|YP_802935.1| EngA [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116257160|gb|ABJ90842.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 449

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 4/88 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           I ++G SN GKSSLFN L     A+ +D+P TTRD     L ++   + I DTAGI    
Sbjct: 5   IALIGKSNVGKSSLFNLLTNSKSALTSDLPSTTRDRQYGFLKIKEKKINIIDTAGINNIK 64

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305
           R+  +++EK+  K+T L ++   LI  L
Sbjct: 65  RKFFNLIEKQAYKQTILAIQEFHLIFFL 92



 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 27/132 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           KI  LG +NAGKS+L N+L   +  I +    TTRD++ I L  +      +DTAGI   
Sbjct: 187 KICFLGKTNAGKSTLINSLLNSNRVITSSTKNTTRDMIEISLINKKIKYIFTDTAGINKK 246

Query: 278 ------------RETDDIVEKEGIK----RTFLEVENADLILLLKEINSKKEISFPKNID 321
                       +++ D+V+K  I      +++ + + DL ++   IN        +N+ 
Sbjct: 247 RKKKDFLNYIFEKKSFDVVKKNQIAIIVIDSYVGISSKDLSIITFLIN--------QNVA 298

Query: 322 FIFIGTKSDLYS 333
           F  I  K DL S
Sbjct: 299 FFIIFNKWDLIS 310


>gi|85373044|ref|YP_457106.1| GTP-binding protein EngA [Erythrobacter litoralis HTCC2594]
 gi|84786127|gb|ABC62309.1| predicted GTPase [Erythrobacter litoralis HTCC2594]
          Length = 485

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++I+G  N GKS+LFN L  K +A+V D PG TRD    D +L G    + DTAG  E D
Sbjct: 9   VIIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRMGDAELAGMEFTVVDTAGW-EDD 67

Query: 282 DIVEKEGIKRTFLEV--ENADLILLLKEINSKKEIS 315
           D     G  R   EV  E AD  L +  I+++  I+
Sbjct: 68  DKDSLPGRMRAQTEVSLEGADAALFV--IDARAGIT 101



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 85/185 (45%), Gaps = 35/185 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL------EGYLVKISDT 274
           K+ I+G  NAGKS+L N L  +D  +     G TRD +++D         E   +++ DT
Sbjct: 200 KLAIVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSISVDWQWTDPKSGEPRDIRLIDT 259

Query: 275 AGIRETDDI---VEKEGIKRTFLEVENADLILLLKE-----------INSK--------- 311
           AG+R+   +   +EK  +   F  V+ A++++LL +           I SK         
Sbjct: 260 AGMRKRARVTEKLEKLSVADAFRAVDFAEVVVLLLDATQGLEHQDLKIASKVLEEGRALM 319

Query: 312 ---KEISFPKNIDFIFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELINKIKSILSNK 365
               +    ++  ++F G ++ L    ++        +S+ TG+GL+E++     I  + 
Sbjct: 320 IAINKWDIAEDASYLFNGIRAALDEGLSQVRGLPLFAVSAKTGKGLDEMLRAAFEIRESW 379

Query: 366 FKKLP 370
            K++P
Sbjct: 380 SKRVP 384


>gi|115525346|ref|YP_782257.1| GTP-binding protein EngA [Rhodopseudomonas palustris BisA53]
 gi|122295592|sp|Q07LA7|DER_RHOP5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|115519293|gb|ABJ07277.1| small GTP-binding protein [Rhodopseudomonas palustris BisA53]
          Length = 460

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 29/186 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  +   ++ I+G  NAGKS++ N L  ++  + +   GTTRD + + +D +G   +I D
Sbjct: 183 EFSKRPIRVAIVGRPNAGKSTMINHLLGEERLLTSPEAGTTRDSIAVSVDYKGRQFRIFD 242

Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI------- 323
           TAG+R    I   +EK  +      V  A++++L+ +  +K E    +  D I       
Sbjct: 243 TAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMLDAQTKFEEQDLRIADLIEREGRAL 302

Query: 324 -FIGTKSDLYSTYT-------EEYDHL-----------ISSFTGEGLEELINKIKSILSN 364
                K DL   +         E DH            +S   GEG++ L++ I+   + 
Sbjct: 303 VIAVNKWDLVERHPGQIGALRTEADHWLPQVKGVPIVAVSGLMGEGIDRLMSAIEDSYAT 362

Query: 365 KFKKLP 370
             +++P
Sbjct: 363 WNRRVP 368



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +   I+G  N GKS+LFN L  + +A+V D PG TRD    +  L      + DTAG+ E
Sbjct: 3   FTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGEGRLGDLEFTLIDTAGLDE 62

Query: 280 TDDIVEKEGI-KRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSD 330
                  E + ++T   +E AD ++ + +       N +    F +  N   I +  KS+
Sbjct: 63  GAKGSLTERMQQQTETAIELADALMFVFDARAGLTPNDRAFADFARRANKPVILVANKSE 122

Query: 331 LYS---TYTEEY-----DHL-ISSFTGEGLEELINKIKSIL 362
             +      E Y     D + IS+  GEGL EL +  ++++
Sbjct: 123 GKAGEIGAMESYALGLGDPVQISAEHGEGLSELYDAFRALM 163


>gi|307564580|ref|ZP_07627120.1| ribosome-associated GTPase EngA [Prevotella amnii CRIS 21A-A]
 gi|307346738|gb|EFN92035.1| ribosome-associated GTPase EngA [Prevotella amnii CRIS 21A-A]
          Length = 437

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSSL N+   ++  IVT+I GTTRD +    +  G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSLINSFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +   +E   + R+   +EN+D+ +L+
Sbjct: 237 NKVSEDLEFYSVMRSIRSIENSDVCILM 264



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L K   AIV+D+ GTTRD         G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTKTRHAIVSDVAGTTRDRQYGKCLWNGREFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI E    ++  +  E AD++L L
Sbjct: 65  DDIFEDAIRQQVLVATEEADIVLFL 89


>gi|218516154|ref|ZP_03512994.1| GTP-binding protein EngA [Rhizobium etli 8C-3]
          Length = 284

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305
            D + ++     +T   ++ ADL L +
Sbjct: 63  ADEESLQGRMRAQTEAAIDEADLSLFV 89



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R  
Sbjct: 204 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 263

Query: 281 DDIVEK 286
             + EK
Sbjct: 264 ARVTEK 269


>gi|147677944|ref|YP_001212159.1| GTP-binding protein EngA [Pelotomaculum thermopropionicum SI]
 gi|189037152|sp|A5D1U6|DER_PELTS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|146274041|dbj|BAF59790.1| predicted GTPase [Pelotomaculum thermopropionicum SI]
          Length = 440

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           + I+G  N GKS+LFN +    VAIV   PG TRD L  D +  G    + DT G+  +E
Sbjct: 6   VAIVGRPNVGKSTLFNRIVGNRVAIVEGEPGVTRDRLYQDAEWSGRSFTLVDTGGLDFKE 65

Query: 280 TDDIVEKEGIKRTF-LEVENADLILLL 305
           +D+I+  +G++R   + +  AD +LL+
Sbjct: 66  SDEII--QGVRRQAEIAIREADAVLLV 90



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N +  ++  IV+++PGTTRD +    +  G    I DTAG+R  
Sbjct: 178 KIAVIGRPNVGKSSLVNLILGEERVIVSNVPGTTRDAIDTPFEANGRHYVIIDTAGMRRK 237

Query: 281 ---DDIVEKEGIKRTFLEVENA 299
              D   EK G+ R    ++ +
Sbjct: 238 SRIDRPTEKYGVIRALRAIDRS 259


>gi|318042374|ref|ZP_07974330.1| ferrous iron transport protein B [Synechococcus sp. CB0101]
          Length = 599

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 4/148 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG  N GKS+LFN L     A + + PG T D++  DL+L G+ +++ D  GI +  
Sbjct: 4   VAVLGMPNTGKSTLFNRLTGHH-AHIGNWPGLTVDLMQADLELAGHHLQLIDLPGIYDLR 62

Query: 282 DIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
            + + E + R FLE    DL+L +L      +++     +    +G  + L     +E  
Sbjct: 63  GLSDDEAVVRRFLEQTPVDLVLVVLNASQLDRQLRLALQVQ--QLGCPAVLALNMADEAA 120

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKK 368
                     L E + +    LS K+++
Sbjct: 121 RFGVRINASALSEAVGQPVLPLSAKYRQ 148


>gi|163867849|ref|YP_001609053.1| GTP-binding protein EngA [Bartonella tribocorum CIP 105476]
 gi|189037137|sp|A9IQH4|DER_BART1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|161017500|emb|CAK01058.1| GTP-binding protein [Bartonella tribocorum CIP 105476]
          Length = 474

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 24/158 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           I I+G  N GKS+LFN L  + +A+V D PG TRD       L+     + DTAG+ E  
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRRIHAAKLQDLRFDVIDTAGLEEAG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKS 329
           D  +E     +T   ++ ADLIL +   ++K  I+ P +++F           + +  KS
Sbjct: 65  DHTLEGRMRSQTKAAIDEADLILFV--FDAKSGIT-PSDLNFASLVRKSGKPIVLVANKS 121

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
           +  +    EY+           IS+  G GL +L + I
Sbjct: 122 ESKAATGGEYEAWSLGLGEPCPISAEHGLGLSDLRDAI 159



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I G  N GKS+L N++ K+D  +     G TRD +++D +  G  +K+ DTAG+R  
Sbjct: 205 RIAIAGRPNTGKSTLINSMLKQDRLLTGPEAGLTRDSISVDWEWRGRHIKLFDTAGLRRK 264

Query: 281 DDIVEK 286
             I EK
Sbjct: 265 SKIQEK 270


>gi|18075577|emb|CAD11184.1| GTP-binding protein [Helicobacter pylori]
 gi|122702815|emb|CAL88597.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 4/96 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L  + V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEI 314
            ++ KE         + +DLIL +   K I S ++I
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDI 104


>gi|304440203|ref|ZP_07400093.1| ribosome-associated GTPase EngA [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371252|gb|EFM24868.1| ribosome-associated GTPase EngA [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 442

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N +  ++ +IVTDIPGTTRD +      +   + + DTAG+R+ 
Sbjct: 181 RVTLIGKPNVGKSSLINFILGEERSIVTDIPGTTRDSIDSHFIYKDTELTLVDTAGLRKK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VE+  + RT   +E +++ +LL
Sbjct: 241 KKINEAVERYSVIRTLTAIERSNVCILL 268



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E+I     + I+G  N GKS+LFN +  + ++I  D PG TRD +  D   +G    + D
Sbjct: 2   EVIMEKPIVSIIGKPNVGKSTLFNKIVGRKISITEDTPGVTRDRIYSDASWQGRKFLLVD 61

Query: 274 TAGIRETDDIVEKEGIK-RTFLEVENADLILLL 305
           T G+   D+ +    IK +  L +E +D+I+ +
Sbjct: 62  TGGLDLKDEDIFMSSIKGQADLALETSDVIIFV 94


>gi|124267181|ref|YP_001021185.1| GTP-binding protein EngA [Methylibium petroleiphilum PM1]
 gi|166225824|sp|A2SHB1|DER_METPP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|124259956|gb|ABM94950.1| putative GTP-binding protein EngA [Methylibium petroleiphilum PM1]
          Length = 446

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG+R  
Sbjct: 181 RLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFERNGQKFELIDTAGLRRK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   + +A+++LLL
Sbjct: 241 GKVFESIEKFSVVKTLQAIADANVVLLL 268



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + ++G  N GKS+LFN L K   AIV D  G TRD    D  L      + DT G   T 
Sbjct: 5   LALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGDGRLGEREFIVVDTGGFEPTA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           +  + KE  K+T   V  +D+++ + ++ +
Sbjct: 65  ESGIYKEMAKQTRQAVAESDVVIFVVDVRA 94


>gi|327403775|ref|YP_004344613.1| GTP-binding protein engA [Fluviicola taffensis DSM 16823]
 gi|327319283|gb|AEA43775.1| GTP-binding protein engA [Fluviicola taffensis DSM 16823]
          Length = 436

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-- 279
           I ++G  N GKSS+ NA   ++  IVTDI GTTRD +       G+   + DTAGIR+  
Sbjct: 179 IAVVGKPNVGKSSMINAFTGEERNIVTDISGTTRDSIDTRYKAFGFDFMLIDTAGIRKKA 238

Query: 280 --TDDIVEKEGIKRTFLEVENADLILLL 305
             T+DI E   + R+   +EN+D+ + +
Sbjct: 239 KVTEDI-EYYSVLRSVRTIENSDICIFM 265



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  I I+G  N GKS+LFN L + + AIV +I G TRD +    +  G    + DT G +
Sbjct: 2   GNIIAIVGRPNVGKSTLFNRLTESNHAIVKEISGVTRDRIYGRGEWNGIPFSVIDTGGYV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305
           R ++DI E E  K+  + ++ A++IL +
Sbjct: 62  RGSEDIFEGEIRKQVEIAIDEANVILFV 89


>gi|332880705|ref|ZP_08448378.1| hydrogenase maturation GTPase HydF [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681339|gb|EGJ54263.1| hydrogenase maturation GTPase HydF [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 399

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 23/164 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276
           N + I + G  N+GKSSL N L  + VA+V+D+PGTT DV+  +++L G    +  DTAG
Sbjct: 10  NRFHIGLFGRRNSGKSSLVNMLTGQQVAVVSDVPGTTTDVVLKNIELPGVGASVLVDTAG 69

Query: 277 IRETDDIVEKEG--IKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFI- 325
               DD  E  G  +++T       DL L++       ++KE ++ +     +I  ++I 
Sbjct: 70  Y---DDEGELGGLRVRQTVNAARRVDLALIIVSGLPDGAEKEKAWAERFRADDIPVLYIY 126

Query: 326 -------GTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSI 361
                  G+ +D +       + + +S+ TGEG + L++ +  +
Sbjct: 127 NKVDEDGGSHADAWCMTLGATEVVSVSARTGEGRDRLLSAMAEV 170


>gi|270297048|ref|ZP_06203247.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273035|gb|EFA18898.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 402

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 8/120 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I + G  N+GKSSL NAL  +D A+V+  PGTT D +T  +++   G  + I DT 
Sbjct: 8   NRLHIAVFGRRNSGKSSLVNALTGQDTALVSATPGTTTDPVTKAMEVYPLGPCLFI-DTP 66

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSD 330
           G  + +  +    ++RT   VE AD+ LLL E +   E  +      + I  I I  K+D
Sbjct: 67  GFDDDEGELGGMRVERTLKTVEKADIALLLYEADGTLEQQWIKLLAAREIPVILILNKAD 126


>gi|255690242|ref|ZP_05413917.1| GTP-binding protein [Bacteroides finegoldii DSM 17565]
 gi|260624262|gb|EEX47133.1| GTP-binding protein [Bacteroides finegoldii DSM 17565]
          Length = 396

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 18/166 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V+D PGTT D+++  ++++G       DT G
Sbjct: 10  NRLHIALFGRRNSGKSSLVNALTGQDTALVSDTPGTTTDLVSKAMEMQGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---------KEINS---KKEISFPKNIDFIF 324
             +  ++ E   + RT   +E  D+ LLL         KE+ +   +K I     ++ I 
Sbjct: 70  FDDEGELGELR-VSRTLKAIEKTDIALLLCGDTTFSHEKEMLALLKEKNIPVIPVLNKID 128

Query: 325 IGTKSDLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKF 366
           I   SD  +TY E+       L+S+    G+E++   I   L + F
Sbjct: 129 IRENSDSLATYIEKECKIRPLLVSAKEEIGIEQIRQAILEKLPSDF 174


>gi|23099252|ref|NP_692718.1| GTP-binding protein EngA [Oceanobacillus iheyensis HTE831]
 gi|37999696|sp|Q8EQA8|DER_OCEIH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|22777481|dbj|BAC13753.1| GTP binding protein [Oceanobacillus iheyensis HTE831]
          Length = 436

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NAL  +D  IV++I GTTRD +   L  +     I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNALLNEDRVIVSEIEGTTRDAIDTKLHRDDQDFVIIDTAGMRKRGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D++L+L
Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVL 264



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 55/94 (58%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN L  + ++IV DIPG TRD +  + +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRLVGERISIVEDIPGVTRDRIYANAEWLNHTFNIIDTGGIELGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           + +  +  ++  + ++ AD+I+ L  +N K+ I+
Sbjct: 66  EPLLVQMRQQAEIAIDEADVIVFL--LNGKEGIT 97


>gi|225175916|ref|ZP_03729908.1| small GTP-binding protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168504|gb|EEG77306.1| small GTP-binding protein [Dethiobacter alkaliphilus AHT 1]
          Length = 419

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 24/172 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I I G  NAGKSSL NAL  +D+A+V+ +PGTT D +   +++   G +V I DTAG+ +
Sbjct: 12  IAIFGKRNAGKSSLINALTNQDIALVSSVPGTTTDPVYKAMEILPLGPVVLI-DTAGLDD 70

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDL 331
             ++ E   ++R+   +  ADL+LL+ +        ++EIS     K++  + +  K+D+
Sbjct: 71  EGELGELR-VQRSRAVLNKADLVLLVLDGADVPGVFEEEISRLCQKKDVPVVGVLNKADV 129

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                     ++   ++   ++S+ TG G+ +L  KI  I S   K    SI
Sbjct: 130 NAPDKLTVEAFTRLLQKEPQVVSAATGAGIGQL--KIAMIQSAPEKWDELSI 179


>gi|284048589|ref|YP_003398928.1| small GTP-binding protein [Acidaminococcus fermentans DSM 20731]
 gi|283952810|gb|ADB47613.1| small GTP-binding protein [Acidaminococcus fermentans DSM 20731]
          Length = 405

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 29/171 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I + G  NAGKSSL NA+  +D+AIV+D  GTT D ++  ++ L    V ++DT G+ + 
Sbjct: 16  IGLFGCRNAGKSSLINAITGQDLAIVSDYKGTTTDPVSKAMEILPLGPVLLTDTPGMDDD 75

Query: 281 DDIVEKEGIKRTFLEVENADLIL---------------LLKEINSKKEISFPKNIDFIFI 325
            D+ +   I++  L + + D+ L               LL+EI  +K       I ++ +
Sbjct: 76  TDLGQSR-IEKARLVLRSTDIALLVVDAATGMNDFDRKLLQEIRDRK-------IPYLVV 127

Query: 326 GTKSDLYSTYT-----EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             K DL  ++T     +++  L+S+  G  + EL  +I   L  +  K P 
Sbjct: 128 FNKCDLVPSFTLPEDLKDHSMLVSAQAGTRIWELKERISQALGKEEVKKPL 178


>gi|255086559|ref|XP_002509246.1| predicted protein [Micromonas sp. RCC299]
 gi|226524524|gb|ACO70504.1| predicted protein [Micromonas sp. RCC299]
          Length = 468

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 16/113 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL---EGYLVKISDTAGI 277
           K+ I+G  N GKSSL N LA    +IV+D  GTTRD  TID D+   +G    + DTAGI
Sbjct: 199 KVAIIGRPNVGKSSLLNQLAGDARSIVSDYSGTTRD--TIDSDVIGADGKKYTLIDTAGI 256

Query: 278 RE------TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
           R       + D  E   + R    +  AD+++L+  I++++    P   DF+ 
Sbjct: 257 RRRTSVAASKDAPESLAVGRALQAMRRADVVVLV--IDAEEG---PSQQDFVL 304


>gi|328675592|gb|AEB28267.1| GTP-binding protein EngA [Francisella cf. novicida 3523]
          Length = 465

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 62/102 (60%), Gaps = 5/102 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G+   I DTAG
Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGHKYTIVDTAG 240

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +R+   +   +EK  + +T   ++++++++ +  +++++ IS
Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280



 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276
           + I+G +N GKS+LFN L     A+V D  G TRD         DLD   YLV   DT G
Sbjct: 5   VAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + D   ++   K++ + ++ A+L+  +
Sbjct: 60  ISDKDIGFDEFMAKQSQIAIDEANLVFFV 88


>gi|258513539|ref|YP_003189761.1| small GTP-binding protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257777244|gb|ACV61138.1| small GTP-binding protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 408

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 19/150 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279
           I + G  NAGKSSL NAL ++++AIV+++ GTT D +   +++   G +V I DTAG+ +
Sbjct: 12  IALFGRRNAGKSSLINALTRQNLAIVSNVAGTTTDPVYKSMEILPIGPVVLI-DTAGLDD 70

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSDL 331
             ++ +K  + ++   +   DL+LL+ ++     K E+        K +  I +  K DL
Sbjct: 71  EGELGQKR-VAKSMAVLAKTDLVLLVADVQKGLGKTELELIETARKKELPVIGVANKIDL 129

Query: 332 YSTYTEEYDHL-------ISSFTGEGLEEL 354
                E    L       +S+ TG+G+ EL
Sbjct: 130 LPQPEEISFPLPDMTWVKVSALTGKGINEL 159


>gi|206895297|ref|YP_002247145.1| ribosome-associated GTPase EngA [Coprothermobacter proteolyticus
           DSM 5265]
 gi|206737914|gb|ACI16992.1| ribosome-associated GTPase EngA [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 425

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 46/62 (74%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +++ ++G +NAGKS+L N L  K+  +V+++PGTT D +T  ++++  +V+++DT G+R+
Sbjct: 173 FRVSVIGRTNAGKSTLMNRLLGKERVLVSEMPGTTLDFITETINVKDMVVEVTDTPGLRK 232

Query: 280 TD 281
            D
Sbjct: 233 GD 234



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           + VI+G  N GKSSLFN L     A+  D PG TRD L+   +  G   ++ DT G+   
Sbjct: 3   RFVIIGAPNVGKSSLFNRLVGGRKALTYDQPGVTRDYLSHICEWRGRYFELVDTGGLYRG 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKSDL 331
           +  +E    KR+    ++AD++L + + +   S  E    +++     + I +G K DL
Sbjct: 63  EQDLE-SFWKRSLEIAQDADVVLFVVDASEHLSSVEYDIAQDLRKMGKEVIVVGNKMDL 120


>gi|32473806|ref|NP_866800.1| GTP-binding protein [Rhodopirellula baltica SH 1]
 gi|32444342|emb|CAD74340.1| probable GTP-binding protein [Rhodopirellula baltica SH 1]
          Length = 472

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+  N LA+ D  IV+++ GTTRD + +  +++G      DT G+R+ 
Sbjct: 197 KIAIVGRRNVGKSTFVNTLAESDRMIVSEVAGTTRDSVDVRFEIDGQTFLAIDTPGLRKR 256

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   ++  G  R    V  AD++L+ 
Sbjct: 257 KSIRTDLDFYGTHRAQRSVRRADVVLMF 284



 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 5/93 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA--GIR 278
           ++ I+G  N GKSSLFN LA++ +AIV +  G TRD +T  ++ +    ++ DT   G+ 
Sbjct: 23  QVAIVGRPNVGKSSLFNWLARRRLAIVDNFEGVTRDRMTTLIESDDQFFELIDTGGMGVE 82

Query: 279 ETDDIVEKEGIKRTF-LEVENADLILLLKEINS 310
           + DD+     ++R   + + +AD+ILL+ ++ +
Sbjct: 83  DADDLTSD--VRRQIDMAIASADVILLVVDVQT 113


>gi|315186271|gb|EFU20032.1| small GTP-binding protein [Spirochaeta thermophila DSM 6578]
          Length = 411

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 2/90 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
           +IV+ G  NAGKSSL NA+ +K+VAIV+D PGTT D +T   +L G   V  +DTAG+ +
Sbjct: 11  RIVLFGLRNAGKSSLMNAIFEKEVAIVSDQPGTTTDPVTRAYELIGAGPVAFTDTAGL-D 69

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN 309
            +  +    I+R    +  AD+ LL+  + 
Sbjct: 70  DEGPLGSLRIERAKKALAQADIALLVTPLT 99


>gi|312871411|ref|ZP_07731506.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 3008A-a]
 gi|311093064|gb|EFQ51413.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 3008A-a]
          Length = 435

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 29/185 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +  I+G  N GKSS+ N++  ++  IV ++ GTTRD +    + +G    I DTAGI
Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVAEMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326
           R    +   VEK  + R+   +E +D+ +++ +     I   K I   +       I   
Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292

Query: 327 TKSDLYSTYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368
            K D+ S  T           +E+ +L       +S+ TG+ +E++++ +K++  N+ ++
Sbjct: 293 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352

Query: 369 LPFSI 373
           +  S+
Sbjct: 353 IQSSV 357



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D PG TRD +  +    G    + DT GI   D
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
           +++E++   +  + +  AD+I++L ++
Sbjct: 66  NVIEEQIKTQAEIAINEADVIVMLSDV 92


>gi|52841771|ref|YP_095570.1| GTP-binding protein EngA [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|81823403|sp|Q5ZV99|DER_LEGPH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|52628882|gb|AAU27623.1| GTP-binding protein EngA [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 462

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI   G  N GKS+L N +  ++  +V D+PGTTRD ++I    E     + DTAG+R  
Sbjct: 176 KIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSISIPFTREDKQYVLIDTAGVRRK 235

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN 309
              D+ +EK  + +T   ++ A + LLL + N
Sbjct: 236 SRIDEKIEKFSVIKTLQAIKEAHVCLLLLDAN 267



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D PG TRD        E     I DT GI   D
Sbjct: 5   IALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGIGVDD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             V+    +++ + +  A++IL L
Sbjct: 65  IEVDTLMSRQSQVALNEANVILFL 88


>gi|307610240|emb|CBW99801.1| hypothetical protein LPW_15641 [Legionella pneumophila 130b]
          Length = 462

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI   G  N GKS+L N +  ++  +V D+PGTTRD ++I    E     + DTAG+R  
Sbjct: 176 KIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSISIPFTREDKQYVLIDTAGVRRK 235

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN 309
              D+ +EK  + +T   ++ A + LLL + N
Sbjct: 236 SRIDEKIEKFSVIKTLQAIKEAHVCLLLLDAN 267



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D PG TRD        E     I DT GI   D
Sbjct: 5   IALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGIGVDD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             V+    +++ + +  A++IL L
Sbjct: 65  IEVDTLMSRQSQVALNEANVILFL 88


>gi|212696217|ref|ZP_03304345.1| hypothetical protein ANHYDRO_00753 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676846|gb|EEB36453.1| hypothetical protein ANHYDRO_00753 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 442

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKSSL N L  ++  IVTDI GTTRD +      +     + DTAG+R  
Sbjct: 181 RIAIIGKPNAGKSSLVNHLLNEERMIVTDIAGTTRDAIDTYWQYKDNNYVLIDTAGLRRK 240

Query: 281 D---DIVEKEGIKRTFLEVENADLILLL 305
           +   D +E    +RTF  V+++++ L L
Sbjct: 241 NKVSDNIEYYANQRTFDAVDSSEICLFL 268



 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKS+LFN L  K  AI  D  G TRD +   ++  G    ++DT G+    
Sbjct: 10  VTLVGRTNVGKSTLFNKLVGKRKAITEDENGVTRDRVYDKVEWTGKEFILADTGGL---- 65

Query: 282 DIVEKEGIKRTFL-EVENA----DLILLL 305
           DI  KE + +    +VE A    DLIL +
Sbjct: 66  DISNKEIMNQEIKSQVEKALLESDLILFV 94


>gi|114569754|ref|YP_756434.1| small GTP-binding protein [Maricaulis maris MCS10]
 gi|114340216|gb|ABI65496.1| small GTP-binding protein [Maricaulis maris MCS10]
          Length = 490

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 6/105 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS+LFN LA K +AIV D PG TRD       L    + + DTAG  ++
Sbjct: 7   RIAVVGRPNVGKSTLFNRLAGKPLAIVDDRPGVTRDRREARGRLGDLPLLLIDTAGYDDS 66

Query: 281 D-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
           + D ++ E   +T + + +ADL LLL  I+++  ++    +D +F
Sbjct: 67  EKDGLDAEMRTQTEMAIHDADLCLLL--IDARAGVT---PLDVVF 106



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 11/107 (10%)

Query: 210 GKLGEIIRNGYK--------IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           G + +  R G K        I ++G  NAGKS+L N L  ++  I     G TRD +++D
Sbjct: 167 GPMAKAARRGSKDDGDPPLRIAVIGRPNAGKSTLINTLIGEERLITGPEAGITRDAISVD 226

Query: 262 LDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
              +G  V++ DTAG+R   +  D +E+     T   V+ A+++LLL
Sbjct: 227 WVWDGRRVRLHDTAGLRKRGKVADRLERMSAADTLRAVKFAEVVLLL 273


>gi|319952374|ref|YP_004163641.1| gtp-binding protein enga [Cellulophaga algicola DSM 14237]
 gi|319421034|gb|ADV48143.1| GTP-binding protein engA [Cellulophaga algicola DSM 14237]
          Length = 435

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  ++  IVTD+ GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINALIGEERYIVTDVAGTTRDSIDTKYNRFGFEFNLVDTAGIRRK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E++D+ +++
Sbjct: 236 SKVHEDLEFYSVMRSVRAIEHSDVCIII 263



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L K+  AIV  + G TRD      D  G    + DT G ++ +
Sbjct: 5   VAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKSDWNGREFSVIDTGGYVKGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD+ E E  K+  L ++ AD+I+ + ++ +
Sbjct: 65  DDVFEAEIDKQVELAIDEADVIIFMVDVET 94


>gi|320108687|ref|YP_004184277.1| ribosome-associated GTPase EngA [Terriglobus saanensis SP1PR4]
 gi|319927208|gb|ADV84283.1| ribosome-associated GTPase EngA [Terriglobus saanensis SP1PR4]
          Length = 633

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           GE      K+ I+G  N GKS+L NAL   D +IV+ I GTTRD +   ++  G+  +  
Sbjct: 356 GEYDSKETKVAIIGRPNVGKSTLLNALTGTDRSIVSPIAGTTRDAVDELVERNGHGFRFV 415

Query: 273 DTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           DTAGIR   +T  + EK  +      +E AD+ LL+
Sbjct: 416 DTAGIRRKGKTTLMAEKLSVIMARKHLEAADVGLLI 451



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G  N GKS+LFN L     +IV D PG TRD +  +++ +    +I DT G+   D
Sbjct: 165 IAVCGRPNVGKSTLFNRLTGTRRSIVGDEPGITRDRIYGEIEWQSEYARIVDTGGVVPDD 224

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           + ++  E  ++  + ++ AD I+++  ++ + E++ P
Sbjct: 225 EALIPSEIYRQARVALDEADAIIMV--VDGRTELAAP 259


>gi|262282140|ref|ZP_06059909.1| GTP-binding protein engA [Streptococcus sp. 2_1_36FAA]
 gi|262262594|gb|EEY81291.1| GTP-binding protein engA [Streptococcus sp. 2_1_36FAA]
          Length = 436

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 31/153 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSILSNKF 366
            EYD  I+ F    G+G+  ++NK  ++  + +
Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTLEKDNY 304



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV ++ G TRD +    D       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVENVEGVTRDRIYATADWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADAIVFV 89


>gi|218673078|ref|ZP_03522747.1| GTP-binding protein EngA [Rhizobium etli GR56]
          Length = 393

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 37/63 (58%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62

Query: 280 TDD 282
            D+
Sbjct: 63  ADE 65



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R  
Sbjct: 204 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 263

Query: 281 DDIVEK 286
             + EK
Sbjct: 264 ARVTEK 269


>gi|54297453|ref|YP_123822.1| GTP-binding protein EngA [Legionella pneumophila str. Paris]
 gi|148359075|ref|YP_001250282.1| GTP-binding protein EngA [Legionella pneumophila str. Corby]
 gi|296107123|ref|YP_003618823.1| GTP-binding protein EngA [Legionella pneumophila 2300/99 Alcoy]
 gi|81822576|sp|Q5X522|DER_LEGPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225822|sp|A5IC36|DER_LEGPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|53751238|emb|CAH12649.1| hypothetical protein lpp1498 [Legionella pneumophila str. Paris]
 gi|148280848|gb|ABQ54936.1| GTP-binding protein EngA [Legionella pneumophila str. Corby]
 gi|295649024|gb|ADG24871.1| GTP-binding protein EngA [Legionella pneumophila 2300/99 Alcoy]
          Length = 462

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI   G  N GKS+L N +  ++  +V D+PGTTRD ++I    E     + DTAG+R  
Sbjct: 176 KIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSISIPFTREDKQYVLIDTAGVRRK 235

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN 309
              D+ +EK  + +T   ++ A + LLL + N
Sbjct: 236 SRIDEKIEKFSVIKTLQAIKEAHVCLLLLDAN 267



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D PG TRD        E     I DT GI   D
Sbjct: 5   IALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGIGVDD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             V+    +++ + +  A++IL L
Sbjct: 65  IEVDTLMSRQSQVALNEANVILFL 88


>gi|300741227|ref|ZP_07071248.1| ribosome-associated GTPase EngA [Rothia dentocariosa M567]
 gi|300380412|gb|EFJ76974.1| ribosome-associated GTPase EngA [Rothia dentocariosa M567]
          Length = 529

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA  + A+V D+ GTTRD +   ++L GY  +  DTAGIR
Sbjct: 252 RVALIGRPNVGKSSLLNKLAGSERAVVNDLAGTTRDPIDEVIELGGYPWRFIDTAGIR 309



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++ N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 78  VAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWVGKRFTLVDTGGWESDA 137

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++ +   +  + VE AD+++L+
Sbjct: 138 RGIDAQVADQAEIAVEQADVVILV 161


>gi|325846572|ref|ZP_08169487.1| ribosome biogenesis GTPase Der [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481330|gb|EGC84371.1| ribosome biogenesis GTPase Der [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 438

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKSSL N L  ++  IVTDI GTTRD +      +     + DTAG+R  
Sbjct: 177 RIAIIGKPNAGKSSLVNHLLNEERMIVTDIAGTTRDAIDTYWQYKDNNYVLIDTAGLRRK 236

Query: 281 D---DIVEKEGIKRTFLEVENADLILLL 305
           +   D +E    +RTF  V+++++ L L
Sbjct: 237 NKVSDNIEYYANQRTFDAVDSSEICLFL 264



 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKS+LFN L  K  AI  D  G TRD +   ++  G    ++DT G+    
Sbjct: 6   VTLVGRTNVGKSTLFNKLVGKRKAITEDENGVTRDRVYDKVEWTGKEFILADTGGL---- 61

Query: 282 DIVEKEGIKRTFL-EVENA----DLILLL 305
           DI  KE + +    +VE A    DLIL +
Sbjct: 62  DISNKEIMNQEIKSQVEKALLESDLILFV 90


>gi|109899427|ref|YP_662682.1| GTP-binding protein EngA [Pseudoalteromonas atlantica T6c]
 gi|123170868|sp|Q15R60|DER_PSEA6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|109701708|gb|ABG41628.1| small GTP-binding protein [Pseudoalteromonas atlantica T6c]
          Length = 482

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 95/184 (51%), Gaps = 14/184 (7%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +L +++ +  K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ +     
Sbjct: 186 QLEKLLASPIKLAIVGKPNVGKSTLTNRILGEERVVVYDQPGTTRDSIFIPMERDDREYV 245

Query: 271 ISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFIF 324
           + DTAG+R    I   VEK  I +T   +E A+++LL+   +E  + +++S    + F+ 
Sbjct: 246 LIDTAGVRRRRSISEAVEKFSIVKTLQAIEEANVVLLVIDAQEGVTDQDLSL---LGFVL 302

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
              +S + +    ++D L      E   EL  ++  I    F +L +    H  ++ HL 
Sbjct: 303 NSGRSLVVA--VNKWDGLAKDVKDEIKRELDRRLGFI---DFARLHYISALHGTNVGHLF 357

Query: 385 QTVR 388
           ++V+
Sbjct: 358 ESVQ 361



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      + EG    + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYEGLQFIVVDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     ++ + ++ AD++L L
Sbjct: 65  QGIDMAMANQSLMAIDEADVVLFL 88


>gi|256545124|ref|ZP_05472490.1| ribosome-associated GTPase EngA [Anaerococcus vaginalis ATCC 51170]
 gi|256399165|gb|EEU12776.1| ribosome-associated GTPase EngA [Anaerococcus vaginalis ATCC 51170]
          Length = 442

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKSSL N L  ++  IVTDI GTTRD +      +     + DTAG+R  
Sbjct: 181 RIAIIGKPNAGKSSLVNHLLNEERMIVTDIAGTTRDAIDTYWQYKDNNYVLIDTAGLRRK 240

Query: 281 D---DIVEKEGIKRTFLEVENADLILLL 305
           +   D +E    +RTF  V+++++ L L
Sbjct: 241 NKVSDNIEYYANQRTFDAVDSSEICLFL 268



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 32/174 (18%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E I N   + ++G +N GKS+LFN L  K  AI  D+ G TRD +   ++  G+   ++D
Sbjct: 2   ENIMNAPIVTLVGRTNVGKSTLFNKLVGKRKAITEDVNGVTRDRVYDKVEWIGHEFILAD 61

Query: 274 TAGIRETDDIVEKEGIKRTFL-EVENA----DLILLLKE----IN-------------SK 311
           T G+    DI  KE + +    +VE A    DLIL + +    IN             +K
Sbjct: 62  TGGL----DISNKELMNQEIKSQVEKALLESDLILFVVDGREGINPHDYEIADEIRKYNK 117

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG---LEELINKIKSIL 362
           K I     ID   I     +Y  Y   +D LIS+ + EG   L +L++KI S +
Sbjct: 118 KVIVVANKIDGANI--PDHIYDFYQFGFDDLIST-SAEGSKNLGDLLDKIVSFI 168


>gi|325107065|ref|YP_004268133.1| ribosome-associated GTPase EngA [Planctomyces brasiliensis DSM
           5305]
 gi|324967333|gb|ADY58111.1| ribosome-associated GTPase EngA [Planctomyces brasiliensis DSM
           5305]
          Length = 450

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSS  NALA+ +  IV++I GTTRD + +  +L+       DT G+R+ 
Sbjct: 185 KIAIVGRRNVGKSSFINALAQTERMIVSEIAGTTRDSVDVRFELDDKAFVAIDTPGVRKK 244

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E  G+ R    +  A+L+L+ 
Sbjct: 245 KSLANDIEFYGLVRAQKSIRRANLVLMF 272



 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           K+VI+G  N GKSS+FN +A + +++V    G TRD +T
Sbjct: 5   KVVIVGRPNVGKSSIFNWIAGRMISVVDPTAGVTRDRIT 43


>gi|54294416|ref|YP_126831.1| GTP-binding protein EngA [Legionella pneumophila str. Lens]
 gi|81822385|sp|Q5WWG8|DER_LEGPL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|53754248|emb|CAH15725.1| hypothetical protein lpl1485 [Legionella pneumophila str. Lens]
          Length = 462

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI   G  N GKS+L N +  ++  +V D+PGTTRD ++I    E     + DTAG+R  
Sbjct: 176 KIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSISIPFTREDKQYVLIDTAGVRRK 235

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN 309
              D+ +EK  + +T   ++ A + LLL + N
Sbjct: 236 SRIDEKIEKFSVIKTLQAIKEAHVCLLLLDAN 267



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D PG TRD        E     I DT GI   D
Sbjct: 5   IALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGIGVDD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             V+    K++ + +  A++IL L
Sbjct: 65  IEVDTLMSKQSQVALNEANVILFL 88


>gi|313893405|ref|ZP_07826977.1| ribosome biogenesis GTPase Der [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442046|gb|EFR60466.1| ribosome biogenesis GTPase Der [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 444

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + ++G  N GKS+LFNA+  K ++IV DIPG TRD +  D +       + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           E   ++ K    +  L +E AD+IL +
Sbjct: 66  ENSHVIPKMMRLQAELAIEEADVILFV 92



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + I+G  N GKSSL NAL  +D  IV+D+ GTTRD +            + DTAG+R   
Sbjct: 181 VAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTYWTHGDQKFVLIDTAGMRRKS 240

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           + D+ VE+  I R+   V+ +D+++L+
Sbjct: 241 KIDEAVERYSIVRSLRSVDRSDIVVLV 267


>gi|262371654|ref|ZP_06064933.1| ribosome-associated GTPase EngA [Acinetobacter junii SH205]
 gi|262311679|gb|EEY92764.1| ribosome-associated GTPase EngA [Acinetobacter junii SH205]
          Length = 469

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N L  ++  +  D PGTTRD + I  + +G    + DTAG+R
Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVR 235

Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299
              + D+++EK  I +T   +++A
Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDA 259



 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN + K   A+V D  G TRD
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39


>gi|56751772|ref|YP_172473.1| GTP-binding protein EngA [Synechococcus elongatus PCC 6301]
 gi|81301149|ref|YP_401357.1| GTP-binding protein EngA [Synechococcus elongatus PCC 7942]
 gi|81820595|sp|Q5N167|DER_SYNP6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123556312|sp|Q31KP9|DER_SYNE7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|56686731|dbj|BAD79953.1| GTP-binding protein engA [Synechococcus elongatus PCC 6301]
 gi|81170030|gb|ABB58370.1| Small GTP-binding protein domain [Synechococcus elongatus PCC 7942]
          Length = 453

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N+   +  AIV+ I GTTRD +   ++      ++ DTAGIR   
Sbjct: 180 VAIVGRPNVGKSSLLNSFLGEQRAIVSPIAGTTRDAIDTVIERNDQRYRLVDTAGIRRKR 239

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEI 308
            +    E  GI R+F  +  AD+ LL+ ++
Sbjct: 240 GVDYGPEFFGINRSFKAIRRADVCLLVIDV 269



 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + ILG  N GKS+L N LA    AIV D PG TRD
Sbjct: 6   VAILGRPNVGKSTLVNRLAGSREAIVHDEPGVTRD 40


>gi|170750287|ref|YP_001756547.1| small GTP-binding protein [Methylobacterium radiotolerans JCM 2831]
 gi|170656809|gb|ACB25864.1| small GTP-binding protein [Methylobacterium radiotolerans JCM 2831]
          Length = 448

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  NAGKS+L N +  +D  +V    G TRD +++D +  G  +K+ DTAG+R  
Sbjct: 183 KVAIVGRPNAGKSTLINRMLGEDRLLVGPEAGITRDSISLDWEWRGRRIKLHDTAGMRRR 242

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305
              DD +EK  +      V  A+++++L
Sbjct: 243 ARIDDKLEKLAVSDGLRAVRFAEVVVVL 270



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 36/60 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD    D+   G   ++ DTAG+ E D
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDVAFGGLEFRVIDTAGLEEAD 65


>gi|325846671|ref|ZP_08169586.1| hydrogenase maturation GTPase HydF [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481429|gb|EGC84470.1| hydrogenase maturation GTPase HydF [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 380

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 5/114 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           + +LG +N+GKSS  N ++ +DV+IV++  GTT D +   +++  +  V   DTAG  + 
Sbjct: 11  LALLGKTNSGKSSFLNFISDQDVSIVSNQKGTTTDPIKKSMEIHDFGPVLFFDTAGFDDD 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-KEISF--PKNIDFIFIGTKSDL 331
            ++ EK  I++T   +E AD++L    I+ K +EIS    K    IFI TK DL
Sbjct: 71  TNLYEKR-IEKTKKAIEKADILLYFLSIDDKIEEISVLKEKYDKIIFIATKQDL 123


>gi|307307991|ref|ZP_07587709.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti BL225C]
 gi|307319941|ref|ZP_07599364.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti AK83]
 gi|306894481|gb|EFN25244.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti AK83]
 gi|306901395|gb|EFN31999.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti BL225C]
          Length = 476

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L     +I DTAG+ E
Sbjct: 3   FTVAIIGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGLEE 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305
           +  D ++     +T   ++ ADL L +
Sbjct: 63  SSPDSLQGRMWAQTEAAIDEADLSLFV 89



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 195 DILFLKNDISSHISQGKLGEIIRNGY------KIVILGHSNAGKSSLFNALAKKDVAIVT 248
           D+     DI     +G   E +   Y      ++ I+G  NAGKS+L N    +D  +  
Sbjct: 174 DVAETNVDIRPAAGEGTEDEEVEPAYDETKPLRVAIVGRPNAGKSTLINRFLGEDRLLTG 233

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
              G TRD ++++ D  G  +K+ DTAG+R    + EK
Sbjct: 234 PEAGITRDSISVEWDWRGRTIKMFDTAGMRRKAKVQEK 271


>gi|159479670|ref|XP_001697913.1| hypothetical protein CHLREDRAFT_120661 [Chlamydomonas reinhardtii]
 gi|158274011|gb|EDO99796.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 446

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 7/91 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR-- 278
           + I+G  N GKSSL NA+A ++ +IV D+ GTTRD +   + L  G  + + DTAGIR  
Sbjct: 179 VAIVGRPNVGKSSLLNAIAGEERSIVCDMSGTTRDAVDTKVTLPTGKKLTLIDTAGIRKR 238

Query: 279 ----ETDDIVEKEGIKRTFLEVENADLILLL 305
               ++ D  E+  + R    V  AD+ +L+
Sbjct: 239 SRVADSPDGAEQISVDRAMRAVRRADVAVLV 269



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 24/163 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A   VA+V D PG TRD L            + DT G+    
Sbjct: 1   VAIVGRPNVGKSALFNRIAGASVAVVFDQPGVTRDRLYTRAFWGDKEFVMIDTGGLMSDA 60

Query: 282 DIVEKEGIKRTFLE-VENADLILLL-----------KEINSKKEISFPKNIDFIFIG--- 326
             +  + I+R     V  AD ++LL           +EI S    + P     + +    
Sbjct: 61  TRLPPDAIERQAAAGVAEADTVILLVDGQAGLQPGDEEILSWLRSNHPSKSLLLAVNKCE 120

Query: 327 --TKSD-----LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
              K+D      +ST  E   H +S+ +G G  E+++ +  +L
Sbjct: 121 NVAKADQMVAEFWSTGLEP--HAVSAISGTGTGEMLDVLAKML 161


>gi|307719473|ref|YP_003875005.1| hypothetical protein STHERM_c17970 [Spirochaeta thermophila DSM
           6192]
 gi|306533198|gb|ADN02732.1| hypothetical protein STHERM_c17970 [Spirochaeta thermophila DSM
           6192]
          Length = 423

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 2/90 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
           +IV+ G  NAGKSSL NA+ +K+VAIV+D PGTT D +T   +L G   V  +DTAG+ +
Sbjct: 23  RIVLFGLRNAGKSSLMNAIFEKEVAIVSDQPGTTTDPVTRAYELIGAGPVAFTDTAGLDD 82

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              +     I+R    +  AD+ LL+  + 
Sbjct: 83  EGPLGSIR-IERAKKALAQADIALLVTPLT 111


>gi|126653372|ref|ZP_01725476.1| GTP-binding protein EngA [Bacillus sp. B14905]
 gi|126589888|gb|EAZ84019.1| GTP-binding protein EngA [Bacillus sp. B14905]
          Length = 436

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NA   +D  IV+DI GTTRD +      +     I DTAG+R+ 
Sbjct: 177 KFSLIGRPNVGKSSLVNAFLGQDRVIVSDIAGTTRDAIDTPYAYDDQEYVIIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I    EK  + R    +E +D++L++
Sbjct: 237 GKIYETTEKYSVLRALRAIERSDVVLVV 264



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++  ++  + +E AD+I+ +
Sbjct: 66  EPFLEQIRQQAEIAIEEADVIIFM 89


>gi|41017011|sp|Q7URJ8|DER_RHOBA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|327537179|gb|EGF23928.1| small GTP-binding protein [Rhodopirellula baltica WH47]
          Length = 454

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+  N LA+ D  IV+++ GTTRD + +  +++G      DT G+R+ 
Sbjct: 179 KIAIVGRRNVGKSTFVNTLAESDRMIVSEVAGTTRDSVDVRFEIDGQTFLAIDTPGLRKR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   ++  G  R    V  AD++L+ 
Sbjct: 239 KSIRTDLDFYGTHRAQRSVRRADVVLMF 266



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 5/93 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA--GIR 278
           ++ I+G  N GKSSLFN LA++ +AIV +  G TRD +T  ++ +    ++ DT   G+ 
Sbjct: 5   QVAIVGRPNVGKSSLFNWLARRRLAIVDNFEGVTRDRMTTLIESDDQFFELIDTGGMGVE 64

Query: 279 ETDDIVEKEGIKRTF-LEVENADLILLLKEINS 310
           + DD+     ++R   + + +AD+ILL+ ++ +
Sbjct: 65  DADDLTSD--VRRQIDMAIASADVILLVVDVQT 95


>gi|251771600|gb|EES52176.1| GTP-binding protein (EngA) [Leptospirillum ferrodiazotrophum]
          Length = 468

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+LFN L  ++ AI  D+PG TRD     +    Y  ++ DT GI   D
Sbjct: 14  VAILGRPNVGKSTLFNRLLGENRAITMDMPGVTRDRHYATVTQGPYAYRLVDTGGILFGD 73

Query: 282 DIVEKEGI-KRTFLEVENADLILLL 305
           D    E I K+    +E ADL++ L
Sbjct: 74  DHPLGEAIRKQALFALEEADLLIYL 98



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS+L N L  ++  + + +PGTTRD +   +  +G   +  DTAGIR+ 
Sbjct: 209 RIAVIGRPNVGKSTLINHLLGEERLVTSPLPGTTRDAIDTLVTWKGRPYRFVDTAGIRKR 268

Query: 281 DDIVEKE---GIKRTFLEVENADLILLL 305
             I E     GI RT   +  A++ ++L
Sbjct: 269 GKIAEASEMYGIIRTERTLIQAEIAVVL 296


>gi|220904745|ref|YP_002480057.1| GTP-binding protein EngA [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869044|gb|ACL49379.1| small GTP-binding protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 454

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             ++ +LG  NAGKSSL NAL+ ++  IV+D+ GTTRD + +     G      DTAG+R
Sbjct: 190 ALRLAMLGRPNAGKSSLINALSGEERMIVSDVAGTTRDSVDVRFCRNGKDYVFVDTAGVR 249

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILL 304
              +  D VEK  +         AD+ LL
Sbjct: 250 RRTKITDSVEKYSVNSAIKSSTKADVTLL 278



 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGI 277
           +I+++G  N GKS+LFN L + + AI  D PG TRD +   +  +G     I DT GI
Sbjct: 7   RIILVGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGVVRRKGLPAFGIVDTGGI 64


>gi|187250683|ref|YP_001875165.1| small GTP-binding protein [Elusimicrobium minutum Pei191]
 gi|186970843|gb|ACC97828.1| Small GTP-binding protein [Elusimicrobium minutum Pei191]
          Length = 377

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 10/150 (6%)

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKE 287
           N GKSSLFNALA +  AIV   PGTT D + + +++EG   V + DT GI +    + + 
Sbjct: 2   NVGKSSLFNALAGRAQAIVDSTPGTTTDPVRLIIEIEGLGPVVLLDTGGIDDKSTKLGER 61

Query: 288 GIKRTFLEVENADLILLLKEINS--KKEISF-----PKNIDFIFIGTKSDLYSTYTEEYD 340
            + ++   V   DL LL+   N+    E  F      K I  I I  KSDL     +  D
Sbjct: 62  RVLKSVNAVNQIDLALLVFTDNNFGPYEQDFLETIKAKKIPVILIHNKSDLTPLKLKIED 121

Query: 341 HLISSFTGE--GLEELINKIKSILSNKFKK 368
           H I  F+ +      ++  +K++L+ + KK
Sbjct: 122 HEIIDFSAKNNNTAPILEAVKTVLNKQNKK 151


>gi|320353154|ref|YP_004194493.1| ribosome-associated GTPase EngA [Desulfobulbus propionicus DSM
           2032]
 gi|320121656|gb|ADW17202.1| ribosome-associated GTPase EngA [Desulfobulbus propionicus DSM
           2032]
          Length = 445

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   + ++G  N GKS+LFN + K+  A+V   PG TRD     +  E +   + DT GI
Sbjct: 5   NATLVALIGRPNVGKSTLFNRMVKRRDALVDPTPGVTRDRHYARVSWEEHPFILVDTGGI 64

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305
            + DD +      +  L +E AD+I  L
Sbjct: 65  DDEDDTITNHIRHQALLAIEEADVIFFL 92



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 3/95 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E+  N  +I  LG  N GKSS+ NA+  ++  +V+DI GTTRD +   +  + Y   + D
Sbjct: 175 ELPDNTMRIAFLGRPNVGKSSMVNAIIGQERMVVSDIAGTTRDSVDTLVTRDPYTYLLID 234

Query: 274 TAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           TAGIR   +T D +EK  + +    +   D+ L+L
Sbjct: 235 TAGIRRKGKTTDKLEKFSVLKALKALGRCDIALVL 269


>gi|302797579|ref|XP_002980550.1| hypothetical protein SELMODRAFT_112935 [Selaginella moellendorffii]
 gi|300151556|gb|EFJ18201.1| hypothetical protein SELMODRAFT_112935 [Selaginella moellendorffii]
          Length = 471

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 27/175 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGT--TRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ILG  N GKSSL+N L  +  AIV D P +  TRD+      L     K+ D+AG+  
Sbjct: 4   VIILGRPNVGKSSLYNRLVHRKEAIVYDTPDSHVTRDIREGSAKLSDLRFKVFDSAGLET 63

Query: 280 TDD----IVEKEGIKRTFLEVENADLILL-----LKEINSKKEISFPK---NIDFIFIGT 327
           +++    +    G+  TFL   +A L L+     +  ++ +  + F K   N+  + +  
Sbjct: 64  SEEGATVLARTTGLTATFLRTCHAALFLIDGRAGVSPLDKEAVMWFRKLNLNLPVVLVVN 123

Query: 328 KSD-------LYSTYTEEY-----DHL-ISSFTGEGLEELINKIKSILSNKFKKL 369
           K++       + +   E Y     D + +S+ TGEGL +L  +++ IL    +KL
Sbjct: 124 KAEKITGDHQIMANIAESYSLGLGDPVPVSAETGEGLADLFQRLQPILDAAKEKL 178



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++ I G +N GKS++ N+L +K+  +    PG TRD +TID +     V++ DTAG
Sbjct: 196 RLAIAGRTNVGKSTVINSLLRKERVLTGPEPGLTRDAITIDFEFNKKPVRLVDTAG 251


>gi|295426288|ref|ZP_06818948.1| ribosome-associated GTPase EngA [Lactobacillus amylolyticus DSM
           11664]
 gi|295064027|gb|EFG54975.1| ribosome-associated GTPase EngA [Lactobacillus amylolyticus DSM
           11664]
          Length = 436

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN + K+ +AIV D PG TRD      +  G+   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTLFNRIIKERLAIVEDEPGVTRDRNYAQAEWMGHNFDLIDTGGITWED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +E+E   +  + ++ AD+I++L
Sbjct: 66  GKIEEEIRAQAEIAIDEADVIVML 89



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRETDD 282
           ++G  N GKSS+ N L  +   IV +  GTTRD + T  +  +G   ++ DTAGIR    
Sbjct: 179 VIGRPNVGKSSIVNKLLGEKRVIVANQEGTTRDAIDTPFIGKDGTKFRLIDTAGIRRRGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLL 305
           +    EK  + R    ++ +D+ LL+
Sbjct: 239 VYEKTEKYSVMRALSAIDRSDVALLV 264


>gi|237751648|ref|ZP_04582128.1| GTP-binding protein [Helicobacter bilis ATCC 43879]
 gi|229373014|gb|EEO23405.1| GTP-binding protein [Helicobacter bilis ATCC 43879]
          Length = 489

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   I I+G  N GKSSL NAL   + ++V++I GTT D +   +   GY +   DTAGI
Sbjct: 209 NTISIGIIGRPNVGKSSLLNALTNTNRSLVSNIAGTTIDPVDEHIMYNGYNLTFVDTAGI 268

Query: 278 RETDDI--VEKEGIKRTFLEVENADLILLL 305
           R    I  +EK  + RT   ++  D+ LL+
Sbjct: 269 RRRSKIEGIEKYALDRTQKMLQECDIALLV 298


>gi|227510314|ref|ZP_03940363.1| GTP-binding protein EngA [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189966|gb|EEI70033.1| GTP-binding protein EngA [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 435

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 5/105 (4%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G +  +  +  I+G  N GKSSL NA+  ++  IV+D+ GTTRD +    + +     + 
Sbjct: 168 GNVPNDDIRFSIIGRPNVGKSSLVNAILGENRVIVSDVAGTTRDAIDTRFEADNIKFTMV 227

Query: 273 DTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           DTAGIR+   +    E+  + R    ++ +D+IL +  IN+++ I
Sbjct: 228 DTAGIRKRGKVYENTERYSVMRAMKAIDQSDVILFV--INAEEGI 270



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G  N GKS++FN +A   ++IV D PG TRD +    +       + DT GI+ +D
Sbjct: 6   VAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTHAEWLANEFAMIDTGGIQISD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
                +   +  + +E AD+I+ +
Sbjct: 66  APFNTQIKNQAEIAIEEADVIVFI 89


>gi|90418692|ref|ZP_01226603.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90336772|gb|EAS50477.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 469

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 4/105 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  K +A+V D PG TRD  T D  L     ++ DTAG+ E  
Sbjct: 4   IAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRRTGDATLLDLDFEVVDTAGLEEAG 63

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI 325
            D +E     +T   + +ADL L + ++   K    P++  F+ I
Sbjct: 64  ADTLEGRMRTQTETAIASADLCLFMIDV---KAGVMPQDRAFVEI 105



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 35/170 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N    +D  +     G TRD +  + +  G  +K+ DTAG+R  
Sbjct: 199 RIAIVGRPNAGKSTLINRFLGEDRMLTGPEAGITRDSIASEWEWRGRTIKVFDTAGMRRK 258

Query: 281 DDIVEK-------EGIKR-TFLEV-------------ENADLILLLKEINSKKEISFPKN 319
             + EK       +G++   F EV             ++  ++ L+        I+F K 
Sbjct: 259 AKVQEKLEKLSVADGLRAIKFAEVVVVVFDATIPFERQDMSIVDLVMREGRAPVIAFNK- 317

Query: 320 IDFIFIGTKSDLYSTYTEEYDHL-----------ISSFTGEGLEELINKI 358
             +  I  + ++ +   E+ D L           +S  TGEG+E L+  I
Sbjct: 318 --WDLIEDRQEVLADLREKTDRLLPQARGIRAITVSGETGEGVERLMKAI 365


>gi|302790107|ref|XP_002976821.1| hypothetical protein SELMODRAFT_105942 [Selaginella moellendorffii]
 gi|300155299|gb|EFJ21931.1| hypothetical protein SELMODRAFT_105942 [Selaginella moellendorffii]
          Length = 471

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 27/175 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGT--TRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ILG  N GKSSL+N L  +  AIV D P +  TRD+      L     K+ D+AG+  
Sbjct: 4   VIILGRPNVGKSSLYNRLVHRKEAIVYDTPDSHVTRDIREGSAKLSDLRFKVFDSAGLET 63

Query: 280 TDD----IVEKEGIKRTFLEVENADLILL-----LKEINSKKEISFPK---NIDFIFIGT 327
           +++    +    G+  TFL   +A L L+     +  ++ +  + F K   N+  + +  
Sbjct: 64  SEEGETVLARTTGLTATFLRTCHAALFLIDGRAGVSPLDKEAVMWFRKLNLNLPVVLVVN 123

Query: 328 KSD-------LYSTYTEEY-----DHL-ISSFTGEGLEELINKIKSILSNKFKKL 369
           K++       + +   E Y     D + +S+ TGEGL +L  +++ IL    +KL
Sbjct: 124 KAEKITGDHQIMANIAESYSLGLGDPVPVSAETGEGLADLFQRLQPILDAAKEKL 178



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++ I G +N GKS++ N+L +K+  +    PG TRD +TID +     V++ DTAG
Sbjct: 196 RLAIAGRTNVGKSTVINSLLRKERVLTGPEPGLTRDAITIDFEFNKKPVRLVDTAG 251


>gi|290579757|ref|YP_003484149.1| phosphoglycerate dehydrogenase [Streptococcus mutans NN2025]
 gi|254996656|dbj|BAH87257.1| phosphoglycerate dehydrogenase [Streptococcus mutans NN2025]
          Length = 436

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD + T   D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTTFTDEEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDIVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  +I
Sbjct: 272 REYDKRIAGFAHEAGKGIVVVVNKWDAI 299



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   VAIVGRPNVGKSALFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFV 89


>gi|6681650|dbj|BAA88823.1| phosphoglycerate dehydrogenase [Streptococcus mutans]
          Length = 436

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD + T   D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTTFTDEEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDIVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  +I
Sbjct: 272 REYDKRIAGFAHEAGKGIVVVVNKWDAI 299



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   VAIVGRPNVGKSALFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFV 89


>gi|227513321|ref|ZP_03943370.1| GTP-binding protein EngA [Lactobacillus buchneri ATCC 11577]
 gi|227083194|gb|EEI18506.1| GTP-binding protein EngA [Lactobacillus buchneri ATCC 11577]
          Length = 435

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 5/105 (4%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G +  +  +  I+G  N GKSSL NA+  ++  IV+D+ GTTRD +    + +     + 
Sbjct: 168 GNVPNDDIRFSIIGRPNVGKSSLVNAILGENRVIVSDVAGTTRDAIDTRFEADNIKFTMV 227

Query: 273 DTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           DTAGIR+   +    E+  + R    ++ +D+IL +  IN+++ I
Sbjct: 228 DTAGIRKRGKVYENTERYSVMRAMKAIDQSDVILFV--INAEEGI 270



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G  N GKS++FN +A   ++IV D PG TRD +    +       + DT GI+ +D
Sbjct: 6   VAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTHAEWLANEFAMIDTGGIQISD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
                +   +  + +E AD+I+ +
Sbjct: 66  APFNTQIKNQAEIAIEEADVIVFI 89


>gi|317478951|ref|ZP_07938098.1| small GTP-binding domain-containing protein [Bacteroides sp.
           4_1_36]
 gi|316904928|gb|EFV26735.1| small GTP-binding domain-containing protein [Bacteroides sp.
           4_1_36]
          Length = 396

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 8/120 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I + G  N+GKSSL NAL  +D A+V+  PGTT D +T  +++   G  + I DT 
Sbjct: 8   NRLHIAVFGRRNSGKSSLVNALTGQDTALVSATPGTTTDPVTKAMEVYPLGPCLFI-DTP 66

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSD 330
           G  + +  +    ++RT   VE AD+ LLL E +   E  +      + I  I I  K+D
Sbjct: 67  GFDDDEGELGGMRVERTLKTVEKADIALLLYEADGTLEQQWLKLLAAREIPVILILNKAD 126


>gi|16264869|ref|NP_437661.1| GTP-binding protein EngA [Sinorhizobium meliloti 1021]
 gi|26006728|sp|Q92UK6|DER_RHIME RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|15141008|emb|CAC49521.1| putative GTP-binding protein [Sinorhizobium meliloti 1021]
          Length = 476

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L     +I DTAG+ E
Sbjct: 3   FTVAIIGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGLEE 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305
           +  D ++     +T   ++ ADL L +
Sbjct: 63  SSPDSLQGRMWAQTEAAIDEADLSLFV 89



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 195 DILFLKNDISSHISQGKLGEIIRNGY------KIVILGHSNAGKSSLFNALAKKDVAIVT 248
           D+     DI     +G   E +   Y      ++ I+G  NAGKS+L N    +D  +  
Sbjct: 174 DVAETNVDIRPVAGEGTEDEEVEPAYDETKPLRVAIVGRPNAGKSTLINRFLGEDRLLTG 233

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
              G TRD ++++ D  G  +K+ DTAG+R    + EK
Sbjct: 234 PEAGITRDSISVEWDWRGRTIKMFDTAGMRRKAKVQEK 271


>gi|317060485|ref|ZP_07924970.1| GTP-binding protein [Fusobacterium sp. D12]
 gi|313686161|gb|EFS22996.1| GTP-binding protein [Fusobacterium sp. D12]
          Length = 442

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 182 KLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAIDTLIEYKENRYMIIDTAGIRRK 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ LL+
Sbjct: 242 SKVEESLEYYSVLRAIKTIKRADVCLLM 269



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L    VAIV D+PG TRD L  + +  G    + DT G+   +
Sbjct: 9   VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 68

Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305
           +      IK +  + +  AD+IL +
Sbjct: 69  NDFMMTKIKEQAEVAMNEADVILFV 93


>gi|315918500|ref|ZP_07914740.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059700|ref|ZP_07924185.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
 gi|313685376|gb|EFS22211.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
 gi|313692375|gb|EFS29210.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 442

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 182 KLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAIDTLIEYKENRYMIIDTAGIRRK 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ LL+
Sbjct: 242 SKVEESLEYYSVLRAIKTIKRADVCLLM 269



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L    VAIV D+PG TRD L  + +  G    + DT G+   +
Sbjct: 9   VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 68

Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305
           +      IK +  + +  AD+IL +
Sbjct: 69  NEFMMTKIKEQAEVAMNEADVILFV 93


>gi|221133872|ref|ZP_03560177.1| GTP-binding protein EngA [Glaciecola sp. HTCC2999]
          Length = 481

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 14/174 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKS+L N +  ++  +V D PGTTRD + I ++ +     + DTAG+R+ 
Sbjct: 196 KLAVVGKPNVGKSTLTNRILGEERVVVYDQPGTTRDSIFIPMERDEREYILIDTAGVRKR 255

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFIFIGTKSDLYST 334
             I   VEK  I +T   +E A+++LL+   +E  S +++S    + FI    +S + + 
Sbjct: 256 RKINEAVEKFSIVKTLQAIEEANVVLLVIDAREGISDQDLSL---LGFILNAGRSLVLA- 311

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
              ++D L +    E   EL  ++  +    F +L F    H   + HL ++V+
Sbjct: 312 -VNKWDGLQAHVKDEIKRELDRRLGFV---DFARLHFISALHGTGVGHLFESVQ 361



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD       +E     + DT GI   +
Sbjct: 5   LALVGRPNVGKSTLFNRLTNTRDALVADFPGLTRDRKYGQAKVEDRQFIVIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++    +++ L ++ AD++L L
Sbjct: 65  AGIDAAMAEQSLLAIDEADVVLFL 88


>gi|24380270|ref|NP_722225.1| GTP-binding protein EngA [Streptococcus mutans UA159]
 gi|37999686|sp|Q8DS90|DER_STRMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|24378281|gb|AAN59531.1|AE015016_15 phosphoglycerate dehydrogenase [Streptococcus mutans UA159]
          Length = 436

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD + T   D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTTFTDEEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDIVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  +I
Sbjct: 272 REYDKRIAGFAHEAGKGIVVVVNKWDAI 299



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   VAIVGRPNVGKSALFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFV 89


>gi|257462859|ref|ZP_05627265.1| GTP-binding protein [Fusobacterium sp. D12]
          Length = 438

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 178 KLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAIDTLIEYKENRYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ LL+
Sbjct: 238 SKVEESLEYYSVLRAIKTIKRADVCLLM 265



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L    VAIV D+PG TRD L  + +  G    + DT G+   +
Sbjct: 5   VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 64

Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305
           +      IK +  + +  AD+IL +
Sbjct: 65  NDFMMTKIKEQAEVAMNEADVILFV 89


>gi|206890575|ref|YP_002249177.1| ribosome-associated GTPase EngA [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|238058979|sp|B5YFX9|DER_THEYD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|206742513|gb|ACI21570.1| ribosome-associated GTPase EngA [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 448

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 33/167 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKD---VAIVTDIPGTTRDVL--TIDLDLEGYLVKISDT 274
           + +VI+G  N GKS+LFN + K D    AI    PG TRD+       D + ++V   DT
Sbjct: 2   FTVVIVGRPNVGKSTLFNRMIKSDEKIKAITDKFPGVTRDINYGVAKWDDKEFIV--VDT 59

Query: 275 AGI---RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI----------- 320
            G     + +DI++K+ +++  + + +ADLI+ L +    KE   P +I           
Sbjct: 60  GGFFPEEKIEDIIQKQMLEQIEMAISDADLIIHLLD---SKEGLLPDDIETARQLRQTGK 116

Query: 321 DFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
           D +++  K D  S  +  YD           IS  TG G +ELI+KI
Sbjct: 117 DILWVVNKIDDPSKLSRIYDFYSIGTEELIPISGITGYGFDELIDKI 163



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +N  KI ++G  N GKS++ NAL  K   IV+ IPGTTRD +       G    + DTAG
Sbjct: 178 QNLPKIAVVGRPNVGKSTIINALLGKKRMIVSPIPGTTRDTIDAICTYYGKKYLLIDTAG 237

Query: 277 IRE---------TDDIVEKEGIKRTFLEVENADLILLL 305
           I+           +  VE+    +    +E AD+ +L+
Sbjct: 238 IKRLSYYKKEISQEIYVERLAYFKALRSIERADVAILV 275


>gi|330996163|ref|ZP_08320053.1| hydrogenase maturation GTPase HydF [Paraprevotella xylaniphila YIT
           11841]
 gi|329573667|gb|EGG55258.1| hydrogenase maturation GTPase HydF [Paraprevotella xylaniphila YIT
           11841]
          Length = 399

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 23/164 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276
           N + I + G  N+GKSSL N L  ++VA+V+D+PGTT DV+  +++L G    +  DTAG
Sbjct: 10  NRFHIGLFGRRNSGKSSLVNMLTGQEVAVVSDVPGTTTDVILKNIELPGIGASVLVDTAG 69

Query: 277 IRETDDIVEKEG--IKRTFLEVENADLILLLKE---INSKKEISF-----PKNIDFIFI- 325
               DD  E  G  +K+T       DL L++       ++KE ++       +I  ++I 
Sbjct: 70  Y---DDEGELGGLRVKQTVNAARWVDLALIVVSGLPDGAEKEKAWGERFQADDIPVLYIY 126

Query: 326 -------GTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSI 361
                  G+ +  + T     D + +S+ TGEG + L++ +  +
Sbjct: 127 NKVDEDGGSHAGAWRTALGATDVVSVSARTGEGRDCLLSAMAEV 170


>gi|319901975|ref|YP_004161703.1| iron-only hydrogenase maturation protein HydF [Bacteroides
           helcogenes P 36-108]
 gi|319417006|gb|ADV44117.1| iron-only hydrogenase maturation protein HydF [Bacteroides
           helcogenes P 36-108]
          Length = 402

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTA 275
           N   I I G  N+GKSSL NAL  +D A+V+ +PGTT D +   +++ L G  + I DT 
Sbjct: 14  NRLHIAIFGRRNSGKSSLVNALTGQDTALVSSVPGTTTDPVMKAMEVHLLGSCLFI-DTP 72

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           G  + ++ + +  ++RT   VE  D+ LLL E
Sbjct: 73  GFDDDENKLGEMRVERTLQIVERTDIALLLCE 104


>gi|260662130|ref|ZP_05863026.1| ribosome-associated GTPase EngA [Lactobacillus fermentum 28-3-CHN]
 gi|260553513|gb|EEX26405.1| ribosome-associated GTPase EngA [Lactobacillus fermentum 28-3-CHN]
          Length = 437

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + +AIV D PG TRD L    +  G    + DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGIEMSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +  +  ++  + +E AD+I+++  + +          +I +  N   +    K D   
Sbjct: 66  QPLLTQIRQQAEIAIEEADVIIMVVNVENGVTDADEQVAQILYRSNKPVVLAVNKVDNPE 125

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358
              + YD         + +SS  G GL ++++ +
Sbjct: 126 RRLDVYDFYQLGLGEPYPVSSVHGVGLGDMLDAV 159



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 4/85 (4%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDI 283
           +G  N GKSSL NA+  ++  IV+D+ GTTRD +       +G    + DTAGI++   +
Sbjct: 180 IGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINTQFTAKDGREFTMVDTAGIKKKGKL 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E+  + R+   ++N+D++L++
Sbjct: 240 YENTERYALMRSMRAIDNSDVVLVV 264


>gi|257453165|ref|ZP_05618464.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
 gi|257467370|ref|ZP_05631681.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 438

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 178 KLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAIDTLIEYKENRYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ LL+
Sbjct: 238 SKVEESLEYYSVLRAIKTIKRADVCLLM 265



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L    VAIV D+PG TRD L  + +  G    + DT G+   +
Sbjct: 5   VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 64

Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305
           +      IK +  + +  AD+IL +
Sbjct: 65  NEFMMTKIKEQAEVAMNEADVILFV 89


>gi|332711902|ref|ZP_08431832.1| ribosome-associated GTPase EngA [Lyngbya majuscula 3L]
 gi|332349230|gb|EGJ28840.1| ribosome-associated GTPase EngA [Lyngbya majuscula 3L]
          Length = 463

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 11/96 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD--------LEGYLVKIS 272
           K+ I+G  N GKSSL N L  ++ +IV+ I GTTRD + + +          E    ++ 
Sbjct: 178 KVAIVGRPNVGKSSLLNTLTGENRSIVSPISGTTRDAIDMVVQRSADPEKGTEAQTYRLI 237

Query: 273 DTAGIRETDDIV---EKEGIKRTFLEVENADLILLL 305
           DTAGIR+  ++    E  GI R F  +  +D++LL+
Sbjct: 238 DTAGIRKKKNVTYGPEFFGINRAFKAIRRSDVVLLV 273


>gi|146328838|ref|YP_001209431.1| GTP-binding family protein [Dichelobacter nodosus VCS1703A]
 gi|146232308|gb|ABQ13286.1| GTP-binding family protein [Dichelobacter nodosus VCS1703A]
          Length = 449

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 4/88 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIR-- 278
           + +LG  NAGKS+L N L  ++  + + + GTTRD + I  +D EG    + DTAGIR  
Sbjct: 185 LAVLGRPNAGKSTLLNRLLGEERLVASPVAGTTRDAIRIPYVDNEGDAFTLIDTAGIRRK 244

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
              DD +EK  I +    +E A++++L+
Sbjct: 245 ARVDDKIEKFSIVKALEAIEQANVVILV 272



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   AIV++  G TRD +     L G    + DT G+  T+
Sbjct: 8   VALVGRPNVGKSTLFNTLTRSRQAIVSNKAGLTRDRIYARTTLAGVPCMLIDTGGMLNTE 67


>gi|260424846|ref|ZP_05733464.2| ribosome-associated GTPase EngA [Dialister invisus DSM 15470]
 gi|260403366|gb|EEW96913.1| ribosome-associated GTPase EngA [Dialister invisus DSM 15470]
          Length = 454

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 6/88 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + I+G  N GKS++ N LA+K V+IV DIPG TRD +  D+        + DT GI    
Sbjct: 18  VAIVGRPNVGKSTIINGLAQKRVSIVEDIPGVTRDRIYCDVRWLDREFTMIDTGGIEFRD 77

Query: 279 ETDDIVEKEGIKRTF-LEVENADLILLL 305
           E D I   +GI++   L +E AD+IL +
Sbjct: 78  EADQI--SDGIRQQAQLAMEEADVILFV 103



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  I+G  N GKS+L N+L   + ++V D  GTTRD +      +G    + DTAG+R+ 
Sbjct: 190 RTAIVGRPNVGKSTLINSLLGYERSLVADEMGTTRDAVDSVWKYKGKTFILVDTAGMRKK 249

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN 309
              D+ +EK  + R+   ++N D+ + + + N
Sbjct: 250 GKIDEPLEKYSVIRSIRAIDNCDVAIFVLDAN 281


>gi|167646460|ref|YP_001684123.1| GTP-binding protein EngA [Caulobacter sp. K31]
 gi|167348890|gb|ABZ71625.1| small GTP-binding protein [Caulobacter sp. K31]
          Length = 602

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 11/91 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI-----DLDLEGYLVKISDTA 275
           K+ I+G  N GKS+LFN LA + +A+V D PG TRD         DLDLE     + DTA
Sbjct: 4   KLAIVGRPNVGKSTLFNRLAGRKLALVDDQPGVTRDRRFAHGRLGDLDLE-----LIDTA 58

Query: 276 GIRE-TDDIVEKEGIKRTFLEVENADLILLL 305
           G  + TD+ +E     +T L ++ AD+ LL+
Sbjct: 59  GFEDVTDESLEARMRAQTELAIDEADVSLLV 89



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  NAGKS+L N L  +   +     G TRD +++D D  G  V++ DTAG+R+ 
Sbjct: 181 KIAIVGRPNAGKSTLINRLIGEQRLLTGPEAGITRDSISVDWDWGGRKVRLVDTAGLRKK 240

Query: 281 DDIVEK 286
             + EK
Sbjct: 241 AKVNEK 246


>gi|315641243|ref|ZP_07896320.1| ribosome-associated GTPase EngA [Enterococcus italicus DSM 15952]
 gi|315483010|gb|EFU73529.1| ribosome-associated GTPase EngA [Enterococcus italicus DSM 15952]
          Length = 442

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 34/182 (18%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  IV+D+ GTTRD +      E G    + DTAG+R+   
Sbjct: 185 LIGRPNVGKSSLINAILGEDRVIVSDVEGTTRDAIDTHFTSESGQEFTMIDTAGMRKRGK 244

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKS 329
           +    EK  + R    +E +D++L++  +N+ + I          +  +    I I  K 
Sbjct: 245 VYESTEKYSVMRAMRAIERSDVVLVV--LNADEGIREQDKKIAGYAHEEGRGIIIIVNKW 302

Query: 330 DLYSTYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           DL    T           EE+ +L       +S+ T + L +L   I+S+  N+  ++P 
Sbjct: 303 DLVKKDTNTMRDFEKEIREEFQYLDYAPILFVSAMTKQRLNQLPEMIESVSMNQSMRVPS 362

Query: 372 SI 373
           ++
Sbjct: 363 AV 364



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 51/92 (55%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EII     I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    I D
Sbjct: 4   EIIMAKPTIAIVGRPNVGKSTVFNRIAGERISIVEDTPGVTRDRIYATGEWLGKDFSIID 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           T GI  +D+   ++   +  + ++ AD+I+ +
Sbjct: 64  TGGIDLSDEPFMEQIKHQAEIAIDEADVIVFV 95


>gi|294155403|ref|YP_003559787.1| GTP-binding protein Era [Mycoplasma crocodyli MP145]
 gi|291600406|gb|ADE19902.1| GTP-binding protein Era [Mycoplasma crocodyli MP145]
          Length = 290

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ILG  N GKSSL N++   +++IVT  P TTRD +T   + EGY +  +DT GI +  +
Sbjct: 7   TILGRPNVGKSSLLNSILSYNLSIVTPTPQTTRDQITGVYNEEGYQIIFTDTPGIHKPIN 66

Query: 283 IVEKEGIKRTFLEVENADLILLL 305
            + +   K  +  V+N DL L L
Sbjct: 67  KLGEALNKNAYDTVKNNDLALFL 89


>gi|224826453|ref|ZP_03699555.1| small GTP-binding protein [Lutiella nitroferrum 2002]
 gi|224601554|gb|EEG07735.1| small GTP-binding protein [Lutiella nitroferrum 2002]
          Length = 463

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K  ++G  N GKS+L NA+  ++  I  D  GTTRD + ID + + +   I DTAG+R  
Sbjct: 176 KFAVIGRPNVGKSTLVNAILGEERVIAFDQAGTTRDSIYIDFERDDHTYTIIDTAGVRRR 235

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + ++ +EK  + +T   +E+A++ +L+
Sbjct: 236 GKVNETIEKFSVIKTMKAIEDANVAVLV 263



 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       +      + DT G     
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRHYGHGRVGDKPYLVVDTGGFEPVV 64

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           D    EGI     ++T   V+ AD I+ L
Sbjct: 65  D----EGILFEMARQTLQAVDEADAIVFL 89


>gi|255544860|ref|XP_002513491.1| GTP-binding protein enga, putative [Ricinus communis]
 gi|223547399|gb|EEF48894.1| GTP-binding protein enga, putative [Ricinus communis]
          Length = 624

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRE- 279
           I I+G  N GKSS+ NAL  +D  IV+ I GTTRD +  +    +G   ++ DTAGIR  
Sbjct: 352 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDTAGIRRR 411

Query: 280 -----TDDIVEKEGIKRTFLEVENADLILLLKE 307
                +  + E   + R F  +  +D++ L+ E
Sbjct: 412 AAVASSGSLTEALSVNRAFRAIRRSDVVALVIE 444



 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           ++ I+G  N GKS+LFN L   + AIV D PG TRD L        +   + DT G+   
Sbjct: 142 RVAIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRSFWGDFEFMVVDTGGVLTI 201

Query: 278 -RETDDIVEKEGIKRT 292
            +  D+++E   I  T
Sbjct: 202 SQSQDNVMEDLAITTT 217


>gi|116051824|ref|YP_789333.1| GTP-binding protein EngA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122260971|sp|Q02RV3|DER_PSEAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|115587045|gb|ABJ13060.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 493

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  IV D  GTTRD + I  +    +  + DTAG
Sbjct: 195 KDGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERNEEMYTLIDTAG 254

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R    I   VEK  + +T   +++A++++ +
Sbjct: 255 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFV 286



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   AIV +  G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++ +  +++   +E AD +L L
Sbjct: 65  EGIDAKMAEQSLQAIEEADAVLFL 88


>gi|238597293|ref|XP_002394286.1| hypothetical protein MPER_05849 [Moniliophthora perniciosa FA553]
 gi|215463079|gb|EEB95216.1| hypothetical protein MPER_05849 [Moniliophthora perniciosa FA553]
          Length = 51

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 35/51 (68%)

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           + + F +P+SFT ED  E H+H G A+V+ +L+ L+ +P  R A PGEF+R
Sbjct: 1   MAVFFRAPKSFTTEDVLELHIHSGRAIVSAVLKALSSLPFCRPAEPGEFTR 51


>gi|83590169|ref|YP_430178.1| small GTP-binding protein domain-containing protein [Moorella
           thermoacetica ATCC 39073]
 gi|123524458|sp|Q2RIV4|DER_MOOTA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|83573083|gb|ABC19635.1| Small GTP-binding protein domain [Moorella thermoacetica ATCC
           39073]
          Length = 438

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  K+ I+G  N GKSSL N L  ++  IV+D+PGTTRD +   +        + DTAG+
Sbjct: 174 DALKVAIVGRPNVGKSSLVNRLLGEERVIVSDLPGTTRDAVDTYIRRGEREYILIDTAGM 233

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R    I    E+  + R    VE AD++L++
Sbjct: 234 RRKSRITVPTERYSVLRALRAVERADVVLVI 264



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+LFN +    VAIV D PG TRD L  D +  G    + DT GI    
Sbjct: 6   VAIIGRPNVGKSTLFNRITGGRVAIVEDTPGVTRDRLYRDAEWCGRQFTLVDTGGIATHQ 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           DD +      +    ++ AD+I+ L  ++S+  I+
Sbjct: 66  DDPLVARVRSQAEQALKEADVIIFL--VDSRTGIT 98


>gi|169348409|ref|ZP_02866347.1| hypothetical protein CLOSPI_00124 [Clostridium spiroforme DSM 1552]
 gi|169293878|gb|EDS76011.1| hypothetical protein CLOSPI_00124 [Clostridium spiroforme DSM 1552]
          Length = 434

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL N++  ++  IV++I GTTRD +    + +G   ++ DTAG+R+   I
Sbjct: 178 IIGRPNVGKSSLTNSILGEERVIVSNIEGTTRDAIDTVFEKDGQKYRVIDTAGMRKKGKI 237

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
              VEK  + R    +E +D+I+++
Sbjct: 238 YENVEKYSVLRALSSIEKSDVIVVV 262



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G +N GKS++FN +  + ++IV DI G TRD +           ++ DT GI   D
Sbjct: 5   VAIVGRANVGKSTIFNRIVGERISIVEDIAGVTRDRIYATASWLTKEFRLIDTGGIELKD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
                +   +  + +E ADLI+ +  +N ++ ++
Sbjct: 65  ASFTTQIKMQAEIAIEEADLIIFV--VNGREGVT 96


>gi|160888145|ref|ZP_02069148.1| hypothetical protein BACUNI_00553 [Bacteroides uniformis ATCC 8492]
 gi|160890555|ref|ZP_02071558.1| hypothetical protein BACUNI_02997 [Bacteroides uniformis ATCC 8492]
 gi|156860287|gb|EDO53718.1| hypothetical protein BACUNI_02997 [Bacteroides uniformis ATCC 8492]
 gi|156862280|gb|EDO55711.1| hypothetical protein BACUNI_00553 [Bacteroides uniformis ATCC 8492]
          Length = 396

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 8/120 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I + G  N+GKSSL NAL  +D A+V+  PGTT D +T  +++   G  + I DT 
Sbjct: 8   NRLHIAVFGRRNSGKSSLVNALTGQDTALVSATPGTTTDPVTKAMEVYPLGPCLFI-DTP 66

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSD 330
           G  + +  +    ++RT   VE AD+ LLL E +   E  +      + I  I I  K+D
Sbjct: 67  GFDDDEGELGGMRVERTLKTVEKADIALLLYEADGTLEQQWLKLLAAREIPVILILNKAD 126


>gi|51473858|ref|YP_067615.1| GTP-binding protein EngA [Rickettsia typhi str. Wilmington]
 gi|81692277|sp|Q68W59|DER_RICTY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|51460170|gb|AAU04133.1| probable GTP-binding protein EngA [Rickettsia typhi str.
           Wilmington]
          Length = 447

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFKFLLIDTPGLEENP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D + K  +++T   +  ADLI L+
Sbjct: 66  DNMGKRLMEQTTQAILEADLICLM 89



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 88/217 (40%), Gaps = 32/217 (14%)

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL------SSLYGQWI 162
           NP    +R  E     +LEA    DLI         L ++G SG L      SS   ++ 
Sbjct: 64  NPDNMGKRLMEQTTQAILEA----DLIC--------LMVDGRSGVLPDDKLLSSFVRKYN 111

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEV-----------LNDILFLKNDISSHISQGK 211
                + +  E   DF +E     F S  +           L D +  K  I   I +  
Sbjct: 112 KHCILVVNKCEKAFDFDKEYYKLGFDSIVIISAEHGTGLIDLYDEIIAKLSIKESIERNI 171

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
                 +  +IV+ G  NAGKS+  NA+   +  +     G TR+ + ID   +   +K+
Sbjct: 172 ADPFRGDCLQIVVSGRPNAGKSTFINAIINDERLLTGPEAGITRESIEIDWQYKNTHIKL 231

Query: 272 SDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
            DTAG+R+   I   +EK     T   ++ A+ ++L+
Sbjct: 232 IDTAGLRKKSTITASLEKLSTSDTINAIKFANTVILM 268


>gi|182414655|ref|YP_001819721.1| small GTP-binding protein [Opitutus terrae PB90-1]
 gi|177841869|gb|ACB76121.1| small GTP-binding protein [Opitutus terrae PB90-1]
          Length = 501

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 2/56 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G  N GKS LFN LA+K ++IV D PG TRDV++ D+   GY   + DT GI
Sbjct: 5   VAIVGRPNVGKSRLFNRLARKRISIVHDQPGVTRDVVSTDIADGGYT--LLDTGGI 58



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-----YLVKISDTAG 276
           +  +G  N GKSSL N L + D  IV+++PGTTRD + +  +  G     Y  ++ DTAG
Sbjct: 182 VCFIGRPNVGKSSLSNRLLQSDRLIVSEVPGTTRDAIELPFEFIGRDGKSYPFRLIDTAG 241

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           I+    +   VE     R+   ++  D++ L+
Sbjct: 242 IKAATKLASPVEYFSRLRSLDAIKETDVVFLV 273


>gi|227524465|ref|ZP_03954514.1| GTP-binding protein EngA [Lactobacillus hilgardii ATCC 8290]
 gi|227088335|gb|EEI23647.1| GTP-binding protein EngA [Lactobacillus hilgardii ATCC 8290]
          Length = 435

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G +  +  +  I+G  N GKSSL NA+  ++  IV+D+ GTTRD +    + +     + 
Sbjct: 168 GNVPNDDIRFSIIGRPNVGKSSLVNAILGENRVIVSDVAGTTRDAIDTRFEADNIKFTMV 227

Query: 273 DTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           DTAGIR+   +    E+  + R    ++ +D+IL +
Sbjct: 228 DTAGIRKRGKVYENTERYSVMRAMKAIDQSDVILFV 263



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G  N GKS++FN +A   ++IV D PG TRD +    +       + DT GI+ +D
Sbjct: 6   VAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTHAEWLANEFAMIDTGGIQISD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
                +   +  + +E AD+I+ +
Sbjct: 66  APFNTQIKNQAEIAIEEADVIVFI 89


>gi|289207923|ref|YP_003459989.1| ribosome-associated GTPase EngA [Thioalkalivibrio sp. K90mix]
 gi|288943554|gb|ADC71253.1| ribosome-associated GTPase EngA [Thioalkalivibrio sp. K90mix]
          Length = 484

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 3/95 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N +   +  + TD+ GTTRD + +    +G    + DTAG+R
Sbjct: 198 GIRVAIVGRPNVGKSTLVNRILGDERVVATDVAGTTRDSIFVPFSRDGQDYTLIDTAGVR 257

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
                 +++EK  + +T   +E A +++L+ +  +
Sbjct: 258 RRARVHEVIEKFSVIKTLQAIEAAHVVILVMDAQA 292



 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 42/84 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+ G TRD       +  +   + DT G+    
Sbjct: 5   IALVGRPNVGKSTLFNQLTRSRDALVADVAGLTRDRQYGIGKVGDFPYLVVDTGGLSGEG 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++   ++T   V  AD +L L
Sbjct: 65  AEMDRAMAEQTQRAVAEADHVLFL 88


>gi|312862558|ref|ZP_07722800.1| ribosome biogenesis GTPase Der [Streptococcus vestibularis F0396]
 gi|322517433|ref|ZP_08070306.1| ribosome-associated GTPase EngA [Streptococcus vestibularis ATCC
           49124]
 gi|311101963|gb|EFQ60164.1| ribosome biogenesis GTPase Der [Streptococcus vestibularis F0396]
 gi|322123915|gb|EFX95474.1| ribosome-associated GTPase EngA [Streptococcus vestibularis ATCC
           49124]
          Length = 436

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + I GTTRD +  + +D +G    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSDGQEYTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +    EK  + R+   ++ +D++L++  IN+++ I                       EY
Sbjct: 239 VYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  +I
Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTI 299



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFV 89


>gi|329964947|ref|ZP_08301955.1| hydrogenase maturation GTPase HydF [Bacteroides fluxus YIT 12057]
 gi|328524588|gb|EGF51656.1| hydrogenase maturation GTPase HydF [Bacteroides fluxus YIT 12057]
          Length = 400

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 8/123 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I + G  N+GKSSL NAL  +D A+V+ IPGTT D +   +++   G  + I DT 
Sbjct: 14  NRLHIALFGRRNSGKSSLVNALTGQDTALVSSIPGTTTDPVMKAMEVHPLGPCLFI-DTP 72

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSD 330
           G  + +  +    ++RT   +E  D+ LLL E   ++E     I   ++I  I +  K+D
Sbjct: 73  GFDDDEGELGGMRVERTLKMMERTDIALLLCEDGGEQEKEWLRILAARDIPVIPVLNKAD 132

Query: 331 LYS 333
           L++
Sbjct: 133 LHT 135


>gi|253571982|ref|ZP_04849387.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838579|gb|EES66665.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 405

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V+D PGTT D +   +++ G       DT G
Sbjct: 10  NRLHIALFGKRNSGKSSLINALTGQDTALVSDTPGTTTDPVQKAMEIHGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
             +  ++  +  I+RT+  VE  D+ LLL
Sbjct: 70  FDDEGELGNRR-IERTWKAVEKTDIALLL 97


>gi|167623345|ref|YP_001673639.1| small GTP-binding protein [Shewanella halifaxensis HAW-EB4]
 gi|167353367|gb|ABZ75980.1| small GTP-binding protein [Shewanella halifaxensis HAW-EB4]
          Length = 413

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 20/177 (11%)

Query: 213 GEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LV 269
           G+I   G  Y+I ILG  NAGKSSL N +  + VAIV+DI GTT D +    +L     V
Sbjct: 12  GQIAPRGMRYQIAILGRRNAGKSSLLNMIVGQHVAIVSDIKGTTTDAVAKPYELLPLGPV 71

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-------PKNIDF 322
              DTAGI +   + E+  +K T   +  AD+ LL+ +     E  F          + F
Sbjct: 72  TFFDTAGIDDNGALGEQR-VKATRHVLYRADMALLVADDQGLTEHEFALIEEMTALKLPF 130

Query: 323 IFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           + +  K D+     E+             +S+  G G +E+   I  ++    K+ P
Sbjct: 131 LIVFNKVDICMPTAEDIGFCRQRKLPFIAVSAAKGLGDKEVKRLISELVPANLKEQP 187


>gi|160939128|ref|ZP_02086479.1| hypothetical protein CLOBOL_04022 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438091|gb|EDP15851.1| hypothetical protein CLOBOL_04022 [Clostridium bolteae ATCC
           BAA-613]
          Length = 442

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSS+ N L  ++  IV+DI GTTRD +  ++  EG      DTAG+R  
Sbjct: 179 RIAVVGKPNVGKSSIINKLVGENRVIVSDIAGTTRDAVDTEVIHEGTPYVFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENAD 300
             I   +E+  I RT   VE AD
Sbjct: 239 SKIKEELERYSIIRTVSAVERAD 261



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +A   ++IV D PG TRD +  D D       + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNVIAGDTISIVKDTPGVTRDRIYADCDWLNMNFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+  +  ++  + +  AD+I+ + ++
Sbjct: 66  KDIILSQMREQAEIAISTADVIIFIVDV 93


>gi|194337372|ref|YP_002019166.1| small GTP-binding protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693397|sp|B4SED0|DER_PELPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|194309849|gb|ACF44549.1| small GTP-binding protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 437

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + ++  AIV   PG TRD    + + +G    + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRILRQRSAIVDPTPGVTRDRHIAEGEWQGKQFLLMDTGGYNADG 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           D +    +++T + + +AD+++ L ++ +
Sbjct: 65  DTISMAMLEQTLMAIRDADIVIFLTDVRA 93



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSS  N+L   +  IV++IPGTTRD +      +     + DTAG+R+ 
Sbjct: 179 QLAVVGRPNVGKSSFVNSLLGSNRLIVSNIPGTTRDAIDSRFIRKQQEFILIDTAGLRKR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E     RT   +E  D+ L++
Sbjct: 239 TKIDAGIEYYSSLRTEKAIERCDVALVM 266


>gi|241667168|ref|ZP_04754746.1| GTP-binding protein EngA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875720|ref|ZP_05248430.1| GTP-binding protein engA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841741|gb|EET20155.1| GTP-binding protein engA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 465

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 62/105 (59%), Gaps = 5/105 (4%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G+   I D
Sbjct: 178 EQQRHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGHKYTIVD 237

Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           TAG+R    +   +EK  + +T   ++++++++ +  +++++ IS
Sbjct: 238 TAGVRRRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDAREGIS 280



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           + I+G +N GKS+LFN L     A+V D  G TRD        D  GYLV   DT GI +
Sbjct: 5   VAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLGYLV--VDTGGISD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            D   ++   K++ + ++ A+L+  +
Sbjct: 63  QDAGFDEFMAKQSQMAIDEANLVFFV 88


>gi|227515173|ref|ZP_03945222.1| GTP-binding protein EngA [Lactobacillus fermentum ATCC 14931]
 gi|227086505|gb|EEI21817.1| GTP-binding protein EngA [Lactobacillus fermentum ATCC 14931]
          Length = 437

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + +AIV D PG TRD L    +  G    + DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGIEMSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +  +  ++  + +E AD+I+++  + +          +I +  N   +    K D   
Sbjct: 66  QPLLTQIRQQAEIAIEEADVIIMVVNVENGVTDADEQVAQILYRSNKPVVLAVNKVDNPE 125

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358
              + YD         + +SS  G GL ++++ +
Sbjct: 126 RRLDVYDFYQLGLGEPYPVSSVHGVGLGDMLDAV 159



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 4/85 (4%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDI 283
           +G  N GKSSL NA+  ++  IV+D+ GTTRD +       +G    + DTAGI++   +
Sbjct: 180 IGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINTQFTAKDGREFTMVDTAGIKKKGKL 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E+  + R+   ++++D++L++
Sbjct: 240 YENTERYALMRSMRAIDDSDVVLVV 264


>gi|161507460|ref|YP_001577414.1| GTP-binding protein EngA [Lactobacillus helveticus DPC 4571]
 gi|260101628|ref|ZP_05751865.1| ribosome-associated GTPase EngA [Lactobacillus helveticus DSM
           20075]
 gi|172048280|sp|A8YV35|DER_LACH4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|160348449|gb|ABX27123.1| phosphoglycerate dehydrogenase [Lactobacillus helveticus DPC 4571]
 gi|260084561|gb|EEW68681.1| ribosome-associated GTPase EngA [Lactobacillus helveticus DSM
           20075]
          Length = 435

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 29/179 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSS+ N L  +D  IV +  GTTRD +      +G   K+ DTAGIR    +
Sbjct: 179 VIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGVKFKVVDTAGIRRRGKV 238

Query: 284 VEKE---GIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDL- 331
            EK     + R    +E +D++LL+ + ++      K +   +       I +  K DL 
Sbjct: 239 YEKTEKYSVLRAVAAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLP 298

Query: 332 --YSTYTEEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              ST  +E++                 +S+ TG+ L+++ + +K +  N+ +++  S+
Sbjct: 299 KKNSTSAKEFEREIRAEFQYLDYAPILFVSAKTGQRLDQIPSMVKEVYDNQNQRIQSSV 357



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD      +  G+   + DT GI    
Sbjct: 6   VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
             +E+E   +  + +E AD+I++L  +
Sbjct: 66  GKIEEEIRAQAEIAIEEADVIVMLTNV 92


>gi|21672838|ref|NP_660905.1| GTP-binding protein EngA [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|8134425|sp|O51881|DER_BUCAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|2827027|gb|AAC38119.1| ORF453 hypothetical protein [Buchnera aphidicola]
 gi|21623492|gb|AAM68116.1| probable GPT-binding protein EngA [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 453

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           IV++G +N GKS+LFN L+K   A+V D PG TRD       L E   + I DTAGI   
Sbjct: 5   IVLIGRTNVGKSTLFNILSKTRNALVADYPGLTRDRNYGYCYLKENKKITIVDTAGINFK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
              +EK+  ++T   ++  D IL L
Sbjct: 65  SQKIEKQSHEQTLKAIKECDGILFL 89



 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 9/104 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDT 274
           +N  KI  +G  N GKS+L N+L  K   I ++  GTT D  ++ I  + + Y+    DT
Sbjct: 185 KNSVKIACIGKPNVGKSTLINSLLMKKRMITSNKAGTTLDTVLVPIKYNYKNYI--FIDT 242

Query: 275 AGI---RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           AG+   +   + +EK    +T   +E + L LL+  I++K +IS
Sbjct: 243 AGMSKKKSKTNKIEKFCKIKTLQTIEKSHLTLLI--IDAKDQIS 284


>gi|332362231|gb|EGJ40031.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1056]
          Length = 436

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|29347247|ref|NP_810750.1| putative GTP-binding protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339146|gb|AAO76944.1| putative GTP-binding protein, putative GTPase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 405

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V+D PGTT D +   +++ G       DT G
Sbjct: 10  NRLHIALFGKRNSGKSSLINALTGQDTALVSDTPGTTTDSVQKAMEIHGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
             +  ++  +  I+RT+  VE  D+ LLL
Sbjct: 70  FDDEGELGNRR-IERTWKAVEKTDIALLL 97


>gi|150390617|ref|YP_001320666.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF]
 gi|166920095|sp|A6TS39|DER_ALKMQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|149950479|gb|ABR49007.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF]
          Length = 440

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 5/89 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K+ I+G  N GKSS+ N++  ++  IV+DI GTTRD +     D E   V I DTAG+R 
Sbjct: 178 KVAIIGKPNVGKSSIVNSILGENRVIVSDIAGTTRDAIDTPFNDGEDQYVLI-DTAGLRR 236

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              I   +EK  + R+   VE AD+ LL+
Sbjct: 237 KSKIKENIEKYSVIRSIAAVERADVCLLV 265



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+LFN +    ++IV D PG TRD +  +++   +   + DT GI  +T
Sbjct: 6   VAIVGRPNVGKSTLFNKIIGHRISIVEDQPGVTRDRIYAEVEWLDHYFTLIDTGGIDADT 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           ++I+  +  ++  L +E AD+ + +
Sbjct: 66  EEIIPAQMREQAQLAIETADVTVFM 90


>gi|170740822|ref|YP_001769477.1| GTP-binding protein EngA [Methylobacterium sp. 4-46]
 gi|168195096|gb|ACA17043.1| small GTP-binding protein [Methylobacterium sp. 4-46]
          Length = 446

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ I+G  NAGKS+L N +  +D  +V    G TRD +++D +  G  +K+ DTAG+R  
Sbjct: 180 RVAIVGRPNAGKSTLINRMLGEDRLLVGPEAGITRDSISLDWEWRGRRIKLHDTAGMRRR 239

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
              DD +EK  +      V  A+++++L
Sbjct: 240 ARVDDKLEKLAVSDGLRAVRFAEVVVVL 267



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 34/60 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  + +A+V D PG TRD    +  L      I DTAG+ E D
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGEARLGHLRFTIIDTAGLEEAD 65


>gi|15614201|ref|NP_242504.1| GTP-binding protein EngA [Bacillus halodurans C-125]
 gi|20137999|sp|Q9KCD4|DER_BACHD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|10174255|dbj|BAB05357.1| BH1638 [Bacillus halodurans C-125]
          Length = 437

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL NA+  ++  IV++IPGTTRD +      +     + DTAG+R+ 
Sbjct: 177 RISLIGRPNVGKSSLVNAMLGEERVIVSNIPGTTRDAIDTAFSRDDQEYVLIDTAGMRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R+   +E +D++L++
Sbjct: 237 GKVYESTEKYSVLRSLKAIERSDVVLVV 264



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + VAIV D PG TRD +    +       + DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVAIVEDRPGVTRDRIYSHGEWLNREFNVIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           + +  +   +  L ++ AD+I+ +  +N ++ ++
Sbjct: 66  EPLLVQMRAQAELAIKEADVIIFI--VNGREGVT 97


>gi|332358244|gb|EGJ36072.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK355]
          Length = 436

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|325690931|gb|EGD32931.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK115]
          Length = 436

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|319651358|ref|ZP_08005487.1| GTP-binding protein EngA [Bacillus sp. 2_A_57_CT2]
 gi|317396889|gb|EFV77598.1| GTP-binding protein EngA [Bacillus sp. 2_A_57_CT2]
          Length = 436

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NA+  ++  IV++I GTTRD +   + ++G    I DTAG+R+ 
Sbjct: 177 KFSLIGRPNVGKSSLVNAMLGEERVIVSNIAGTTRDAIDSKVKVDGQEYVIIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E +D++L++
Sbjct: 237 GKVYETTEKYSVLRALRAIERSDVVLVV 264



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +   ++   +  + ++ AD+I+ L  +N ++ ++
Sbjct: 66  EPFLEQIRLQAEIAIDEADVIIFL--VNGREGVT 97


>gi|184155357|ref|YP_001843697.1| GTP-binding protein EngA [Lactobacillus fermentum IFO 3956]
 gi|238692974|sp|B2GC35|DER_LACF3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|183226701|dbj|BAG27217.1| GTP-binding protein [Lactobacillus fermentum IFO 3956]
          Length = 437

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + +AIV D PG TRD L    +  G    + DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGIEMSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +  +  ++  + +E AD+I+++  + +          +I +  N   +    K D   
Sbjct: 66  QPLLTQIRQQAEIAIEEADVIIMVVNVENGVTDADEQVAQILYRSNKPVVLAVNKVDNPE 125

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358
              + YD         + +SS  G GL ++++ +
Sbjct: 126 RRLDVYDFYRLGLGEPYPVSSVHGVGLGDMLDAV 159



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 4/85 (4%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDI 283
           +G  N GKSSL NA+  ++  IV+D+ GTTRD +       +G    + DTAGI++   +
Sbjct: 180 IGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINTQFTAKDGREFTMVDTAGIKKKGKL 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E+  + R+   ++++D++L++
Sbjct: 240 YENTERYALMRSMRAIDDSDVVLVV 264


>gi|167626610|ref|YP_001677110.1| GTP-binding protein EngA [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189037148|sp|B0TZQ0|DER_FRAP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|167596611|gb|ABZ86609.1| GTP-binding protein [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 465

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G+   I DTAG
Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGHKYTIVDTAG 240

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +R    +   +EK  + +T   ++++++++ +  +++++ IS
Sbjct: 241 VRRRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDAREGIS 280



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           + I+G +N GKS+LFN L     A+V D  G TRD        D  GYLV   DT GI +
Sbjct: 5   VAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLGYLV--VDTGGISD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            D   ++   K++ + ++ A+L+  +
Sbjct: 63  QDAGFDEFMAKQSQMAIDEANLVFFV 88


>gi|237752638|ref|ZP_04583118.1| GTP-binding protein engA [Helicobacter winghamensis ATCC BAA-430]
 gi|229376127|gb|EEO26218.1| GTP-binding protein engA [Helicobacter winghamensis ATCC BAA-430]
          Length = 462

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKSSLFN   K+ +AI ++I GTTRDV    + L+     + DT G+ + D
Sbjct: 8   IAIVGRPNAGKSSLFNRFCKQRIAITSEIAGTTRDVKKARILLQDLPFLLFDTGGLDDKD 67

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            + +    K +    E+ADLIL L
Sbjct: 68  ALFQSVS-KHSQRTGESADLILYL 90



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 11/110 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           FL+N+     ++  + E+I  G    I+G  N GKSSL NAL K++ ++V+++ GTT D 
Sbjct: 185 FLENE-----TEKTINELINIG----IIGRVNVGKSSLLNALLKEERSVVSNVAGTTIDP 235

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLL 305
           +    ++ G  V   DTAGIR    I  +EK  + RT   +E  D+ +L+
Sbjct: 236 VDEIGEINGRRVNFVDTAGIRRRGKIEGLEKFALNRTRTILERTDIAILV 285


>gi|149913922|ref|ZP_01902454.1| Small GTP-binding protein domain [Roseobacter sp. AzwK-3b]
 gi|149812206|gb|EDM72037.1| Small GTP-binding protein domain [Roseobacter sp. AzwK-3b]
          Length = 495

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 23/168 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEAKLGDLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS---------FPKNIDFIFIGTK- 328
            TD+ ++    K T   V+ AD+ L L  I+++  ++           K  D + +G   
Sbjct: 63  ATDESLQGRMRKLTERAVDMADVCLFL--IDARAGVTPTDEVLAEILRKRADRVILGANK 120

Query: 329 -------SDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFK 367
                  + +Y  Y       +  S+  GEG+ EL + ++ I S++F+
Sbjct: 121 AEGSAADAGIYEAYGLGLGEPVRLSAEHGEGMNELYSLLQPI-SDEFE 167



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D +G  V+I DTAG+R+ 
Sbjct: 208 QVAVVGRPNAGKSTLINTILGEDRLLTGPEAGITRDAISLQIDWDGLPVRIFDTAGMRKK 267

Query: 280 --TDDIVEKEGIKRTFLEVENADLILLL 305
               D VEK  +      V+ A+++++L
Sbjct: 268 ARVQDKVEKLSVSDGLRAVKFAEVVVVL 295


>gi|327462002|gb|EGF08331.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1057]
          Length = 436

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTL 299



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|116629548|ref|YP_814720.1| GTP-binding protein EngA [Lactobacillus gasseri ATCC 33323]
 gi|116095130|gb|ABJ60282.1| Predicted GTPase [Lactobacillus gasseri ATCC 33323]
          Length = 427

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 29/179 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  +   IV++I GTTRD +      +G    I DTAGIR    +
Sbjct: 179 VIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKV 238

Query: 284 ---VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNI--DFIFIGTKSDLY 332
               EK  + R    +E +D+ LL+ + ++      K    +  +     I +  K DL 
Sbjct: 239 YEKTEKYSVLRAISAIEESDITLLVLDASTGIREQDKHVAGYAHDAGRGVIIVVNKWDLP 298

Query: 333 STYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
             Y+           +E+ +L       +S+ TG+ + +++  +K +  N+ +++  S+
Sbjct: 299 KKYSTSMKDFEDTIRQEFQYLDYAPIVFVSAKTGQRVPDILKLVKEVHDNQTRRIKSSV 357



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D  G TRD +    +  G+   + DT GI    
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLDS 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
             +E++   +  + ++ AD+I++L ++
Sbjct: 66  GEIEEQIKAQAEIAIDEADVIVMLGDV 92


>gi|119505385|ref|ZP_01627459.1| predicted GTPase [marine gamma proteobacterium HTCC2080]
 gi|119458840|gb|EAW39941.1| predicted GTPase [marine gamma proteobacterium HTCC2080]
          Length = 472

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           ++ ++G  N GKS+L N L  +D  +V D PGTTRD + I  +       + DTAG+R  
Sbjct: 177 RVAVVGRPNVGKSTLVNRLLGEDRVVVFDKPGTTRDSVYIRYERHDQAYTLIDTAGVRRR 236

Query: 280 --TDDIVEKEGIKRTFLEVENADLILLLKE 307
               ++VEK  I +T   +  A +++LL +
Sbjct: 237 KNVREVVEKFSIVKTLKAINEAHVVILLMD 266



 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V ++ G TRD    +  +      + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNQLTRSRDALVANLSGLTRDRKYGEGKIGDAPFIVIDTGGISGEE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     ++ + ++ AD++LLL
Sbjct: 65  LGIDAAMADQSRVAIDEADIVLLL 88


>gi|322386141|ref|ZP_08059775.1| ribosome-associated GTPase EngA [Streptococcus cristatus ATCC
           51100]
 gi|321269833|gb|EFX52759.1| ribosome-associated GTPase EngA [Streptococcus cristatus ATCC
           51100]
          Length = 436

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    D       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATADWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|328946827|gb|EGG40964.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1087]
          Length = 436

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTL 299



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|262196911|ref|YP_003268120.1| ribosome-associated GTPase EngA [Haliangium ochraceum DSM 14365]
 gi|262080258|gb|ACY16227.1| ribosome-associated GTPase EngA [Haliangium ochraceum DSM 14365]
          Length = 518

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 28/180 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  NAGKSSL N L   + ++V   PGTT D +    +  G    + DTAGIR  
Sbjct: 243 RVAMLGKPNAGKSSLVNRLVGSERSLVHHQPGTTMDPVDTPFEFAGRSYVLVDTAGIRRR 302

Query: 281 DDI---VEKEGIKRTFLEVENADLILL-----------------LKEINSKKEISFPKNI 320
             +    EK  +     ++E AD+++L                 L E + +  +     +
Sbjct: 303 ARVEAETEKIAVSMAISQIERADIVVLVIDGKLGPSEQDARLAGLVEDSGRGLVVAVNKV 362

Query: 321 DFIF-IGTKSDLYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D +  +G  S + S  ++           L+S+  G+G+ +L++ +  +     K++P +
Sbjct: 363 DLLSGVGAGSKVKSALSDTLHFLSYAPMVLVSALRGDGVADLLSTVDRVALEHAKRVPTA 422



 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           I I+G  N GKS+L+N L     A+V D PG TRD         G+ +++ DT G+  E 
Sbjct: 6   IAIVGRPNVGKSTLYNRLVGGRPALVHDTPGLTRDRRYGAFSYMGHRLRLVDTGGLDPEA 65

Query: 281 DDIVEKEGIKR---TFLEVENADLILL 304
              V   GI R     L+  NA L +L
Sbjct: 66  AKEVIGAGIHRQADAALQEANAVLFVL 92


>gi|323466656|gb|ADX70343.1| GTP-binding protein engA [Lactobacillus helveticus H10]
          Length = 435

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 29/179 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSS+ N L  +D  IV +  GTTRD +      +G   K+ DTAGIR    +
Sbjct: 179 VIGRPNVGKSSVVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGVKFKVVDTAGIRRRGKV 238

Query: 284 ---VEKEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDL- 331
               EK  + R    +E +D++LL+ + ++      K +   +       I +  K DL 
Sbjct: 239 YEKTEKYSVLRAVAAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLP 298

Query: 332 --YSTYTEEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              ST  +E++                 +S+ TG+ L+++ + +K +  N+ +++  S+
Sbjct: 299 KKNSTSAKEFEREIRAEFQYLDYAPILFVSAKTGQRLDQIPSMVKEVYDNQNQRIQSSV 357



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD      +  G+   + DT GI    
Sbjct: 6   VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
             +E+E   +  + +E AD+I++L  +
Sbjct: 66  GKIEEEIRAQAEIAIEEADVIVMLTNV 92


>gi|58040398|ref|YP_192362.1| GTP-binding protein EngA [Gluconobacter oxydans 621H]
 gi|58002812|gb|AAW61706.1| GTP-binding protein [Gluconobacter oxydans 621H]
          Length = 463

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 37/59 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +VI G  N GKS+LFN L  +  AIV+D+PG TRD    +  L G  V++ DTAG+ E 
Sbjct: 13  VVIAGRPNVGKSTLFNRLVGRRQAIVSDMPGVTRDRKEGEALLRGRRVRLIDTAGLEEA 71



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N L  ++  I     G TRD +T++L  E   +++ DTAG+R+ 
Sbjct: 198 RLAIIGRPNAGKSTLLNCLLGEERMITGPEAGLTRDSITVELHDEHGPIQLVDTAGMRKR 257

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  +  +   ++ A++++L+
Sbjct: 258 ARVEQHLEKMSVSASIEALKMAEVVVLV 285


>gi|312143875|ref|YP_003995321.1| ribosome-associated GTPase EngA [Halanaerobium sp. 'sapolanicus']
 gi|311904526|gb|ADQ14967.1| ribosome-associated GTPase EngA [Halanaerobium sp. 'sapolanicus']
          Length = 438

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 9/118 (7%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           IS+ + + +  E  R    I ++G  N GKSSL N L  ++  IV+D+PGTTRD +   +
Sbjct: 161 ISAELPEYEEDEDKREAINIAVIGKPNVGKSSLINHLVGENRVIVSDMPGTTRDAVDTLI 220

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315
           + +       DTAG+R    +  KE I+     R    V+ +D +L++  I++ K +S
Sbjct: 221 EWKDIKFNFIDTAGLRRKSRV--KESIEYYSNLRALKSVDRSDAVLMM--IDATKGVS 274



 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           + I+G  N GKS+LFN L     AIV   P  TRD +  + +       + DT GI  R+
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGGRRAIVEGEPNVTRDRIYGEAEWLDRTFNVIDTGGIVPRD 65

Query: 280 TDDIVEKEGIK-RTFLEVENADLILLL 305
           +D+I  K  IK +  L +E AD+IL +
Sbjct: 66  SDEI--KNKIKYQAELAMEEADVILFV 90


>gi|254501747|ref|ZP_05113898.1| putative GTPase [Labrenzia alexandrii DFL-11]
 gi|222437818|gb|EEE44497.1| putative GTPase [Labrenzia alexandrii DFL-11]
          Length = 478

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 24/162 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L      I DTAG+ 
Sbjct: 5   GATVAIVGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGEARLGDLRFTIIDTAGLE 64

Query: 279 ETDDIVEKEGIKRTFLE-VENADLILLLKEINSKKEISFPKNIDFIFIGTK--------- 328
           + D    +  ++R   E +E AD +L +  I+++  ++ P +  F  +  K         
Sbjct: 65  DADKASLEGRMRRQTEEAIETADAVLFV--IDARAGVT-PLDAHFAAVARKTTRPVILLA 121

Query: 329 ---------SDLYSTYTEEYDHLI--SSFTGEGLEELINKIK 359
                    S LY +++      I  S+  GEGL +L + +K
Sbjct: 122 NKAEGRAGVSGLYESFSLGLGEPIAVSAEHGEGLSDLYDALK 163



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N +  +D  +     G TRD +++D       +K+ DTAGIR+ 
Sbjct: 207 RVAIVGRPNAGKSTLINQMVGEDRMLTGPEAGITRDSISVDWTWHDRHIKLFDTAGIRKK 266

Query: 281 DDIVEK 286
             + EK
Sbjct: 267 ARVQEK 272


>gi|187734830|ref|YP_001876942.1| small GTP-binding protein [Akkermansia muciniphila ATCC BAA-835]
 gi|238691864|sp|B2UMV5|DER_AKKM8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|187424882|gb|ACD04161.1| small GTP-binding protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 464

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           I I+G  N GKS++FN +A + +AIV D PG TRD L+    +     KI DT GI  R 
Sbjct: 7   IAIVGRPNVGKSAIFNRMAGRRIAIVHDEPGVTRDRLSAPCKITDRACKIMDTGGIGARL 66

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           +D   E+   +   + ++ ADLIL +
Sbjct: 67  SDGFAEQVEAE-ADIAIKTADLILFV 91



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ ++G  NAGKSSL NA+ +    IV+++ GTTRD + +    +G    + DTAG+R  
Sbjct: 191 KVAVVGRPNAGKSSLVNAILRDRRTIVSNVAGTTRDAIDVPYLHDGQPYVLIDTAGMRPR 250

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
              D  VE     R+   +  AD+ LL+ +I +
Sbjct: 251 SRRDTSVEVFSAMRSEKAIRRADICLLVIDIAA 283


>gi|325954552|ref|YP_004238212.1| GTP-binding protein engA [Weeksella virosa DSM 16922]
 gi|323437170|gb|ADX67634.1| GTP-binding protein engA [Weeksella virosa DSM 16922]
          Length = 435

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 23/172 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L +K  AIV D+ G TRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRLVQKRQAIVDDVSGVTRDRHYGKSDWNGVEFTVIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISF----PKNIDFIFIG----- 326
           +D  E+E  K+  L V+ A++IL + +      +  KE+S      K   F+ +      
Sbjct: 65  EDTFEEEIRKQVELAVDEANVILFMVDNQVGLTDMDKEVSHLLRKAKKKTFLVVNKVDTN 124

Query: 327 -TKSDLYSTYTEEYDHLIS------SFTGEGLEELINKIKSI-LSNKFKKLP 370
               D Y  YT  +D + +      S TG+ L+E+++  ++    +KF+ LP
Sbjct: 125 KNLDDSYEFYTLGFDKIFTIAAISGSGTGDLLDEVVDSFETKEFEDKFEGLP 176



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L NAL  ++  IVTD+ GTTRD +    +  G+   + DTAG+R+ 
Sbjct: 177 RIAIVGRPNAGKSTLINALLGEERNIVTDVAGTTRDSIETLYNKFGHKFVLVDTAGMRKK 236

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
             + E      + R    +E  D+ +L+
Sbjct: 237 GKVAEDLEFYSVMRAIRTIEECDVCVLV 264


>gi|295110181|emb|CBL24134.1| ribosome-associated GTPase EngA [Ruminococcus obeum A2-162]
          Length = 441

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVTWLDKSFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
            DI+  +  ++  + ++ AD+I+ + ++  
Sbjct: 66  GDIILSQMREQAQIAIDTADVIVFITDVQQ 95



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSL N L  +D  IV+DI GTTRD +   +  +       DTAG+R  
Sbjct: 179 KIAVVGKPNVGKSSLINKLLGEDRVIVSDIAGTTRDAVDAKVKWKDREYIFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENAD 300
             I   +E+  + RT   VE AD
Sbjct: 239 GKIKEELERYSVIRTVTAVERAD 261


>gi|259046866|ref|ZP_05737267.1| ribosome-associated GTPase EngA [Granulicatella adiacens ATCC
           49175]
 gi|259036489|gb|EEW37744.1| ribosome-associated GTPase EngA [Granulicatella adiacens ATCC
           49175]
          Length = 437

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K   +G  N GKSSL NA+  ++  IV+++ GTTRD +     D EG + K+ DTAGIR+
Sbjct: 177 KFSFIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAIDTTFEDEEGTVFKMIDTAGIRK 236

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    +E +D++ ++
Sbjct: 237 KGRVFESTEKYSVLRALRAIERSDIVCVV 265



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN +  + ++IV DI G TRD +  + +  G+   I DT GI  TD
Sbjct: 6   IAVVGRPNVGKSTIFNRIVGERISIVEDIAGVTRDRIYSEGEWLGHSFNIIDTGGIDITD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
           +        +  + +E AD+I+ L  +
Sbjct: 66  EPFMSNIRMQAEIAMEEADVIIFLTSV 92


>gi|49529777|emb|CAG67489.1| putative GTP-binding protein EngA [Acinetobacter sp. ADP1]
          Length = 478

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G ++ I+G  N GKS+L N L  ++  +  D PGTTRD + I  + +G    + DTAG+
Sbjct: 184 TGLRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGV 243

Query: 278 R---ETDDIVEKEGIKRTFLEVENA 299
           R   + D+++EK  + +T   +++A
Sbjct: 244 RRKGKVDEMIEKFSVVKTLQAMKDA 268



 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN + K   A+V D  G TRD
Sbjct: 14  IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 48


>gi|307822499|ref|ZP_07652730.1| ribosome-associated GTPase EngA [Methylobacter tundripaludum SV96]
 gi|307736103|gb|EFO06949.1| ribosome-associated GTPase EngA [Methylobacter tundripaludum SV96]
          Length = 465

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G  I ++G  N GKS+L N L  ++  IV D PGTTRD + I  +  G    + DTAG+
Sbjct: 174 SGIGIAVVGRPNVGKSTLVNRLLGEERVIVFDEPGTTRDSIYIPFERNGKKFTLIDTAGM 233

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R    I   +EK  + ++   +E A++++ L
Sbjct: 234 RRRSKIAETIEKFSVIKSLQAIEKANVVIYL 264



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 23/161 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D  G TRD     + L      + DT GI +  
Sbjct: 5   IALVGRPNVGKSTLFNYLTRSRDALVADFSGLTRDRQYGRVKLGDRPCLVVDTGGIADDA 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI----------DFIFIGTK--- 328
           + +E    K+  + +E AD++  +  +++++ +S    +            I +  K   
Sbjct: 65  EGIESFARKQVQVALEEADIVFFM--VDAREGLSASDKVIADTLRKLQKPVILVTNKVDG 122

Query: 329 -------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  SD YS    E   + +S  G+G+ EL+ K+  +L
Sbjct: 123 LDASTAASDFYSLALGEPVKIAASH-GKGIPELLEKVNQLL 162


>gi|282908791|ref|ZP_06316609.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282327055|gb|EFB57350.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus WW2703/97]
          Length = 348

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD +  +   +G    + DTAG+R+ 
Sbjct: 89  RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 148

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 149 GKVYESTEKYSVLRALKAIERSNVVLVV 176


>gi|161349970|ref|YP_045311.2| GTP-binding protein EngA [Acinetobacter sp. ADP1]
          Length = 469

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G ++ I+G  N GKS+L N L  ++  +  D PGTTRD + I  + +G    + DTAG+
Sbjct: 175 TGLRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGV 234

Query: 278 R---ETDDIVEKEGIKRTFLEVENA 299
           R   + D+++EK  + +T   +++A
Sbjct: 235 RRKGKVDEMIEKFSVVKTLQAMKDA 259



 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I ++G  N GKS+LFN + K   A+V D  G TRD
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39


>gi|312890129|ref|ZP_07749672.1| ribosome-associated GTPase EngA [Mucilaginibacter paludis DSM
           18603]
 gi|311297406|gb|EFQ74532.1| ribosome-associated GTPase EngA [Mucilaginibacter paludis DSM
           18603]
          Length = 433

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  I G  N GKSS+ N L   D  IVT I GTTRD + I  +  G+   + DTAG+R+ 
Sbjct: 175 KYTIAGRPNVGKSSIINTLLGHDRNIVTPIAGTTRDSIHIHYNQFGHDFMLIDTAGMRKK 234

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + RT   +E +D+++L+
Sbjct: 235 TKVKENIEFYSVMRTIKAIEESDVVILM 262



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV D  G TRD      +  G+   + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIEARKAIVDDFSGVTRDRHYGVSEWTGHDFTVIDTGGYVANS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD+ E    ++  + +E A +IL + ++ +
Sbjct: 65  DDVFEAAIREQVIIAIEEASVILFMVDVTT 94


>gi|304414053|ref|ZP_07395421.1| GTP-binding protein [Candidatus Regiella insecticola LSR1]
 gi|304283267|gb|EFL91663.1| GTP-binding protein [Candidatus Regiella insecticola LSR1]
          Length = 491

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N +  ++  IV D+PGTTRD + I +        + DTAG+R+ 
Sbjct: 206 KLAIVGRPNVGKSTLTNRILGEERVIVYDLPGTTRDSIYIPMTRNERQYILIDTAGVRKR 265

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VEK  + +T   +E+++++LL+
Sbjct: 266 GKVTQTVEKFSVIKTLKAIEDSNVVLLV 293



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V+D PG TRD      + E +   + DT G+  T+
Sbjct: 5   VALVGRPNVGKSTLFNHLTRTRSALVSDFPGLTRDRQYGRAEFESHEFIVIDTGGVDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             VE     +  L +E AD++L +
Sbjct: 65  QGVETLMASQALLAIEEADIVLFI 88


>gi|295706430|ref|YP_003599505.1| GTP-binding protein EngA [Bacillus megaterium DSM 319]
 gi|294804089|gb|ADF41155.1| GTP-binding protein EngA [Bacillus megaterium DSM 319]
          Length = 436

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NAL  +D  IV+D+ GTTRD +      E     + DTAG+R+ 
Sbjct: 177 KFSLIGRPNVGKSSLVNALLGEDRVIVSDLAGTTRDAIDTKFTKEDQEYVVIDTAGMRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E +D++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSDVVLVV 264



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +       I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSGEWLNVDFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++  ++  + ++ AD+I+ L
Sbjct: 66  EPFLEQIKQQAEIAIDEADVIIFL 89


>gi|217077884|ref|YP_002335602.1| GTP-binding protein EngA [Thermosipho africanus TCF52B]
 gi|226741195|sp|B7IE34|DER_THEAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|217037739|gb|ACJ76261.1| GTP-binding protein EngA [Thermosipho africanus TCF52B]
          Length = 439

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++  +G  NAGKS+LFN++  K+  +VT IPGTTRD +   + + G      DTAG+R  
Sbjct: 183 RVSFIGRPNAGKSTLFNSILNKERVLVTPIPGTTRDSVDELVTINGRKYLFVDTAGLRRK 242

Query: 281 DDIVEKE----GIKRTFLEVENADLILLL 305
             +  K        R+   +EN+D++++L
Sbjct: 243 SKVDYKSLDMYSNVRSIKSIENSDVVVIL 271



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 25/166 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           ++I+G SN GKS+LFN L     +IV D  G TRD ++  +        I DT GI E  
Sbjct: 4   VLIVGKSNVGKSTLFNKLIGYKKSIVDDKEGVTRDAVSGRVSYYSKTFNIVDTGGIFENP 63

Query: 281 -DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKS 329
            DDI+ K     T   +  ADLIL +  I++K  I+             N D I +  KS
Sbjct: 64  EDDIINKSK-DLTLKMLNEADLILFV--IDAKNGITSEDYYLADIIRKSNNDVILVSNKS 120

Query: 330 --------DLYSTYTEEYDH--LISSFTGEGLEELINKIKSILSNK 365
                   +L   Y   +     +S+  G+ ++ LI +I ++L +K
Sbjct: 121 ESERRVQNNLPDIYKLGFGDPIFVSAEQGKNIDTLIERIVNVLESK 166


>gi|113954844|ref|YP_729899.1| ferrous iron transporter B [Synechococcus sp. CC9311]
 gi|113882195|gb|ABI47153.1| ferrous iron transport protein B [Synechococcus sp. CC9311]
          Length = 613

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV +G  N GKS+ FN + K + A V + PG T D +  +LD  G   +  D  GI + 
Sbjct: 18  RIVFIGQPNTGKSTFFNTVTKSN-AGVANWPGLTVDFMQANLDYNGKTYEFVDLPGIYDL 76

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           +   E E + + FLE  N DLI+ +  IN+ +
Sbjct: 77  EGFTEDELVVQKFLENYNFDLIVCV--INASQ 106


>gi|58584843|ref|YP_198416.1| GTP-binding protein EngA [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58419159|gb|AAW71174.1| Predicted GTPase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 470

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 10/100 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  ++ I+G  N GKS+  N+L  ++  I +  PGTTRD + I  +  G L+ + DTAGI
Sbjct: 203 NRLRVAIIGRPNVGKSTFLNSLLSENRLITSSEPGTTRDSVDITYNHNGKLITLIDTAGI 262

Query: 278 RETDDIVEK----------EGIKRTFLEVENADLILLLKE 307
           R   ++++           E IKR+ + V   D +L +K+
Sbjct: 263 RRRANLIDNLELKFVKKSMESIKRSHVVVLMLDSLLGIKQ 302



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 25/162 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAG 276
           KI I+G  NAGKS+LFN +  +  A+V++IPG TRD    V  I  DLE   +KI DT G
Sbjct: 3   KIAIVGLPNAGKSTLFNRILGRKAAVVSNIPGITRDRQEGVGRIS-DLE---LKIIDTGG 58

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL--KEINSKKEISFPK------NIDFIFIGTK 328
             +  +    + +++    + +AD+I  L   ++ +++   F K      N   I I  K
Sbjct: 59  WNDQTNFFL-QIVEQIEFSLFSADIIFFLVDAKVQNEQNKEFAKWLKRRTNKSVILIANK 117

Query: 329 SDLYST----YTEEYDHL----ISSFTGEGLEELINKIKSIL 362
            + Y +    Y + +D +    IS+    G+ +L N +  ++
Sbjct: 118 CESYKSENIDYLQFFDFIGPVYISAEHNLGMVDLYNALAGVI 159


>gi|34762556|ref|ZP_00143552.1| GTP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887777|gb|EAA24850.1| GTP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 440

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ +L+
Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +       I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSSSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D  +  F G G E L+
Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143


>gi|326794518|ref|YP_004312338.1| GTP-binding protein engA [Marinomonas mediterranea MMB-1]
 gi|326545282|gb|ADZ90502.1| GTP-binding protein engA [Marinomonas mediterranea MMB-1]
          Length = 445

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +I ++G  N GKS+L N +  +D  +V D+PGTTRD + I          + DTAG+R
Sbjct: 179 GIRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYQRHDKEYTLIDTAGVR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305
               +   VEK  I +T   +++A++++ +
Sbjct: 239 RRKHVKEAVEKFSIVKTLQAIQDANVVICV 268



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   A+V D PG TRD    D  L  +   + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDALVADYPGLTRDRKYGDGKLGEHDFIVIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++   ++   +E AD +L L
Sbjct: 65  QGIDEKMASQSLQAIEEADAVLFL 88


>gi|294501083|ref|YP_003564783.1| GTP-binding protein EngA [Bacillus megaterium QM B1551]
 gi|294351020|gb|ADE71349.1| GTP-binding protein EngA [Bacillus megaterium QM B1551]
          Length = 436

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           L D+L   ++ + H  + K  +   +  K  ++G  N GKSSL NAL  +D  IV+D+ G
Sbjct: 152 LGDLL---DEAAKHFPKEKDEDYGEDVIKFSLIGRPNVGKSSLVNALLGEDRVIVSDLAG 208

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           TTRD +      E     + DTAG+R+   +    EK  + R    +E +D++L++
Sbjct: 209 TTRDAIDTKFTKEDQEYVVIDTAGMRKRGKVYESTEKYSVLRALKAIERSDVVLVV 264



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +       I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSGEWLNVDFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++  ++  + ++ AD+I+ L
Sbjct: 66  EPFLEQIKQQAEIAIDEADVIIFL 89


>gi|238809602|dbj|BAH69392.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 290

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL N + K DVAIVT++P TTRD +    + + + +   DT GI +  ++
Sbjct: 9   IIGRPNVGKSSLINQIVKYDVAIVTNVPQTTRDQIVGVYNEDDFQLVFVDTPGIHKPLNL 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311
           + +   K  F   ++ D ++ L  +N K
Sbjct: 69  LGEALNKSAFESTKDVDCLIFLSPVNEK 96


>gi|315038199|ref|YP_004031767.1| GTP-binding protein EngA [Lactobacillus amylovorus GRL 1112]
 gi|325956651|ref|YP_004292063.1| GTP-binding protein Der [Lactobacillus acidophilus 30SC]
 gi|312276332|gb|ADQ58972.1| GTP-binding protein EngA [Lactobacillus amylovorus GRL 1112]
 gi|325333216|gb|ADZ07124.1| GTP-binding protein Der [Lactobacillus acidophilus 30SC]
 gi|327183476|gb|AEA31923.1| GTP-binding protein Der [Lactobacillus amylovorus GRL 1118]
          Length = 435

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 29/179 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSS+ N L  +D  IV +  GTTRD +      +G   K+ DTAGIR    +
Sbjct: 179 VIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGVKFKVVDTAGIRRRGKV 238

Query: 284 ---VEKEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDL- 331
               EK  + R    +E +D++LL+ + ++      K +   +       I +  K DL 
Sbjct: 239 YEKTEKYSVLRAMSAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLP 298

Query: 332 --YSTYTEEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              ST  +E++                 +S+ TG+ L+++ + +K +  N+ +++  S+
Sbjct: 299 KKNSTSAKEFEREIKEEFQYLDYAPILFVSAKTGQRLDQIPSMVKEVYDNQNQRIQSSV 357



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD      +  G+   + DT GI    
Sbjct: 6   VAIVGRPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
             +E+E   +  + +E AD+I++L  +
Sbjct: 66  GKIEEEIRAQAEIAIEEADVIVMLTSV 92


>gi|256545276|ref|ZP_05472641.1| GTPase [Anaerococcus vaginalis ATCC 51170]
 gi|256399103|gb|EEU12715.1| GTPase [Anaerococcus vaginalis ATCC 51170]
          Length = 380

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 15/121 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
           + +V+LG +N+GKSS  N +  +DV+IV+   GTT D +   +++  +  V   DTAG  
Sbjct: 9   FSLVLLGKTNSGKSSFLNYITDQDVSIVSSQKGTTTDPIKKSMEIHDFGPVLFFDTAGFD 68

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL----KEINS----KKEISFPKNIDFIFIGTKSD 330
           +  ++ EK  I++T   +E ADLIL       E+N     KKE    KNI  IFI +K D
Sbjct: 69  DDTNLYEKR-IEKTKKTIEKADLILYFLSMEDELNDIFKLKKEY---KNI--IFIASKQD 122

Query: 331 L 331
           L
Sbjct: 123 L 123


>gi|153812950|ref|ZP_01965618.1| hypothetical protein RUMOBE_03357 [Ruminococcus obeum ATCC 29174]
 gi|149830897|gb|EDM85987.1| hypothetical protein RUMOBE_03357 [Ruminococcus obeum ATCC 29174]
          Length = 441

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVTWLDKSFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
            DI+  +  ++  + ++ AD+I+ + ++  
Sbjct: 66  GDIILSQMREQAQIAIDTADVIVFITDVQQ 95



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKSSL N L  +D  IV+DI GTTRD +   +  +       DTAG+R  
Sbjct: 179 KVAVVGKPNVGKSSLINKLLGEDRVIVSDIAGTTRDAVDAKVKWKDREYIFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENAD 300
             I   +E+  + RT   VE AD
Sbjct: 239 GKIKEEIERYSVIRTVTAVERAD 261


>gi|299538553|ref|ZP_07051836.1| GTP-binding protein EngA [Lysinibacillus fusiformis ZC1]
 gi|298726140|gb|EFI66732.1| GTP-binding protein EngA [Lysinibacillus fusiformis ZC1]
          Length = 436

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NA   ++  IV++I GTTRD +      +G    I DTAG+R+ 
Sbjct: 177 KFSLIGRPNVGKSSLVNAFLGQERVIVSNIAGTTRDAIDTPYAYDGQEYVIIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I    EK  + R    +E +D++L++
Sbjct: 237 GKIYETTEKYSVLRALRAIERSDVVLVV 264



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++  ++  + ++ AD+I+ +
Sbjct: 66  EPFLEQIRQQAEIAIDEADVIIFM 89


>gi|75676210|ref|YP_318631.1| GTP-binding protein EngA [Nitrobacter winogradskyi Nb-255]
 gi|123613178|sp|Q3SR12|DER_NITWN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|74421080|gb|ABA05279.1| Small GTP-binding protein [Nitrobacter winogradskyi Nb-255]
          Length = 455

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 29/169 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS++ N L  ++  + +   GTTRD ++++L+ +G   +I DTAG+R  
Sbjct: 185 RVAIVGRPNAGKSTVINYLLSEERLLTSPEAGTTRDSISVELNWKGRDFRIFDTAGLRRR 244

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--------FIGTKS 329
             I   +EK  +  T   V  A+ ++L+ +  ++ E    +  D I            K 
Sbjct: 245 SRIEAKLEKLSVADTLRAVRFAEAVVLMMDAQNRFEEQDLRIADLIEREGRALVIAVNKW 304

Query: 330 DLY-------STYTEEYDHL-----------ISSFTGEGLEELINKIKS 360
           DL        ++   + DH            IS  TGEG++ L+  I++
Sbjct: 305 DLMKGGSARIASLRNDVDHWLPQIRGAPVVAISGLTGEGIDRLMIAIQT 353



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I I+G  N GKS+LFN L  + +A+V D PG TRD       L      + DTAG+ E
Sbjct: 3   FTIAIIGRPNVGKSTLFNRLVGQKLALVDDEPGVTRDRREGQARLGDLDFTVIDTAGLDE 62


>gi|306832031|ref|ZP_07465186.1| ribosome-associated GTPase EngA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425957|gb|EFM29074.1| ribosome-associated GTPase EngA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 436

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + I GTTRD +  +  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R+   ++ +D++L++  IN+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  +I
Sbjct: 272 REYDKRIAGFAHEAGKGIIIVVNKWDTI 299



 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFV 89


>gi|289706512|ref|ZP_06502865.1| ribosome-associated GTPase EngA [Micrococcus luteus SK58]
 gi|289556770|gb|EFD50108.1| ribosome-associated GTPase EngA [Micrococcus luteus SK58]
          Length = 512

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 213 GEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           G + R G  +I ++G  N GKSSL N LA  D  +V D+ GTTRD +   ++L G L + 
Sbjct: 242 GLVPRGGPRRIALVGRPNVGKSSLLNKLAGSDRVVVDDLAGTTRDPVDELVELGGRLWRF 301

Query: 272 SDTAGIR 278
            DTAGIR
Sbjct: 302 VDTAGIR 308



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 77  LAIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDAEWNGREFTVVDTGGWEH-- 134

Query: 282 DIVEKEGIKRTFLE 295
              + +GI R   E
Sbjct: 135 ---DAKGIHRRVAE 145


>gi|242255880|gb|ACS88924.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ + I +D  GTTRD+    + L  + V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIVITSDFAGTTRDINKRKIALNSHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            ++ KE         + +DLIL
Sbjct: 69  ALLSKEIKALNLKAAQMSDLIL 90


>gi|172035176|ref|YP_001801677.1| GTP-binding protein EngA [Cyanothece sp. ATCC 51142]
 gi|226706247|sp|B1X0B0|DER_CYAA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|171696630|gb|ACB49611.1| GTP-binding protein [Cyanothece sp. ATCC 51142]
          Length = 452

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + I+G  N GKSSL NA   +  AIV+ I GTTRD +   ++      ++ DTAG
Sbjct: 174 REEINVSIIGRPNVGKSSLLNAFLGEQRAIVSPISGTTRDAIDTVVERGDNTYRLIDTAG 233

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           IR   ++    E   I R F  +  AD++LL+
Sbjct: 234 IRRKKNVNYGAEFFSINRAFKAIRRADVVLLV 265



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 10/66 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKS+L N LAK   AIV D PG TRD         D D +     + DT G
Sbjct: 6   VAIIGRPNVGKSTLVNRLAKDRQAIVHDQPGITRDRTYRPAFWCDRDFQ-----VVDTGG 60

Query: 277 IRETDD 282
           +   DD
Sbjct: 61  LVFDDD 66


>gi|315223115|ref|ZP_07864983.1| ribosome-associated GTPase EngA [Streptococcus anginosus F0211]
 gi|315187804|gb|EFU21551.1| ribosome-associated GTPase EngA [Streptococcus anginosus F0211]
          Length = 436

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDNEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGIIIVVNKWDTL 299



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+ FN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTFFNRIAGERISIVEDVEGVTRDRIYATAEWLNRKFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADIIVFV 89


>gi|288906012|ref|YP_003431234.1| GTP-binding protein [Streptococcus gallolyticus UCN34]
 gi|288732738|emb|CBI14312.1| putative GTP-binding protein [Streptococcus gallolyticus UCN34]
          Length = 436

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + I GTTRD +  +  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R+   ++ +D++L++  IN+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  +I
Sbjct: 272 REYDKRIAGFAHEAGKGIIIVVNKWDTI 299



 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFV 89


>gi|325978979|ref|YP_004288695.1| GTP-binding protein EngA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178907|emb|CBZ48951.1| GTP-binding protein EngA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 436

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + I GTTRD +  +  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R+   ++ +D++L++  IN+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  +I
Sbjct: 272 REYDKRIAGFAHEAGKGIIIVVNKWDTI 299



 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFV 89


>gi|319938676|ref|ZP_08013040.1| GTP-binding protein engA [Streptococcus anginosus 1_2_62CV]
 gi|319811726|gb|EFW07992.1| GTP-binding protein engA [Streptococcus anginosus 1_2_62CV]
          Length = 436

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGIIIVVNKWDTL 299



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    D       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATADWLNRKFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFV 89


>gi|294784590|ref|ZP_06749879.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_27]
 gi|294487806|gb|EFG35165.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_27]
          Length = 440

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ +L+
Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D  +  F G G E L+
Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143


>gi|237741193|ref|ZP_04571674.1| GTP-binding protein [Fusobacterium sp. 4_1_13]
 gi|229430725|gb|EEO40937.1| GTP-binding protein [Fusobacterium sp. 4_1_13]
          Length = 440

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ +L+
Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D  +  F G G E L+
Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143


>gi|301059965|ref|ZP_07200844.1| ribosome-associated GTPase EngA [delta proteobacterium NaphS2]
 gi|300445932|gb|EFK09818.1| ribosome-associated GTPase EngA [delta proteobacterium NaphS2]
          Length = 435

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
              +  K +LND++     +S     G+  E IR    + +LG  N GKSSL N + K D
Sbjct: 147 AHGYGVKALLNDLV---KGLSPSEDTGEDSEEIR----VAVLGKPNVGKSSLINRILKTD 199

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             +V+++PGTTRD +       G    + DTAGIR    + EK
Sbjct: 200 RLVVSELPGTTRDTVDSAFSYGGREYLLIDTAGIRRKSRVREK 242



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L +   A+V D PG TRD L   +  EG  + + DT G  +  
Sbjct: 5   IAIVGRPNVGKSTLFNRLTRSKRALVDDRPGITRDRLHGTISHEGLQMTLVDTGGFEDLG 64

Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305
               ++G++ +    ++ AD I+ +
Sbjct: 65  QDPLQKGVRAQVETAIQEADRIIFM 89


>gi|53804568|ref|YP_113568.1| ferrous iron transport protein B [Methylococcus capsulatus str.
           Bath]
 gi|53758329|gb|AAU92620.1| ferrous iron transport protein B [Methylococcus capsulatus str.
           Bath]
          Length = 595

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 4/147 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS+ FN L     A V + PG T D+L+  + L G + ++ D  GI   
Sbjct: 3   RIALVGMPNTGKSTFFNRLTGAS-ARVGNWPGITVDLLSARIILGGTVAQVVDLPGIYSF 61

Query: 281 DDIVEKEGIKRTFLEVENADLI-LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
               E E + R FLE    DL+ ++L      +++ F   +    +G  + L     +E 
Sbjct: 62  HGFSEDEKVVRDFLENNPVDLVAVVLNATQIDRQLPFALQVA--RLGLPTVLLLNMADEA 119

Query: 340 DHLISSFTGEGLEELINKIKSILSNKF 366
            HL  S     + EL+     +LS K+
Sbjct: 120 RHLGISIDARRMAELLRMPVILLSAKY 146


>gi|171780272|ref|ZP_02921176.1| hypothetical protein STRINF_02060 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281620|gb|EDT47055.1| hypothetical protein STRINF_02060 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 437

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + I GTTRD +  +  D EG    + DTAG+R+
Sbjct: 177 KFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGMRK 236

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R+   ++ +D++L++  IN+++ I                      
Sbjct: 237 SGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI---------------------- 272

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  +I
Sbjct: 273 REYDKRIAGFAHEAGKGIIIVVNKWDTI 300



 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFV 89


>gi|90408609|ref|ZP_01216764.1| GTP-binding protein EngA [Psychromonas sp. CNPT3]
 gi|90310301|gb|EAS38431.1| GTP-binding protein EngA [Psychromonas sp. CNPT3]
          Length = 488

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I +  +     + DTAG+R  
Sbjct: 201 KLAIIGKPNVGKSTLINRILGEERVVVFDQPGTTRDSIYIPMSRDDREYILIDTAGVRKR 260

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + ++ VEK  + +T   +E+A+++LL+
Sbjct: 261 KKVNETVEKFSVIKTLKAIEDANVVLLV 288



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD       L+     + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLDEDEFIVIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++     ++ L ++ AD +L +
Sbjct: 65  EGIDSLMAGQSLLAIDEADAVLFM 88


>gi|313157956|gb|EFR57362.1| ribosome biogenesis GTPase Der [Alistipes sp. HGB5]
          Length = 434

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 38/188 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L  +  AIV    GTTRD      D  G    + DT G    +
Sbjct: 4   VAIVGRPNVGKSTLFNRLVGQRKAIVDATAGTTRDRHYGKTDWNGKEFSVIDTGGYTVNS 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----------------NSKKEISFPKNIDFI 323
           +DI E E  ++  L ++ AD+IL L E+                  SKK I     +D  
Sbjct: 64  EDIFEDEIRRQVLLAIDEADVILFLVEVATGITDLDQLMADILRRTSKKVILVCNKVD-- 121

Query: 324 FIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                  +YS++  E+  L       ISS +G G  +L++ I + L  +      ++P  
Sbjct: 122 ---NNDQIYSSH--EFYALGLGDPFCISSMSGSGTGDLMDAILAALPAE------TVPEE 170

Query: 377 KRHLYHLS 384
              L H++
Sbjct: 171 DEDLPHIT 178



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSS+ NAL  ++  IVT I GTTRD +    +  G    + DTAG+R+  
Sbjct: 177 ITIVGRPNVGKSSMTNALLGEERNIVTSIAGTTRDSIHTRYNKFGMDFYLVDTAGMRKKG 236

Query: 282 DIVEK---EGIKRTFLEVENADLILLL 305
             +E      + R+   +EN+D+ +L+
Sbjct: 237 KAMEDLEFYSVMRSIRAIENSDVCILM 263


>gi|299783191|gb|ADJ41189.1| GTP-binding protein engA [Lactobacillus fermentum CECT 5716]
          Length = 370

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + +AIV D PG TRD L    +  G    + DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGIEMSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +  +  ++  + +E AD+I+++  + +          +I +  N   +    K D   
Sbjct: 66  QPLLTQIRQQAEIAIEEADVIIMVVNVENGVTDADEQVAQILYRSNKPVVLAVNKVDNPE 125

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358
              + YD         + +SS  G GL ++++ +
Sbjct: 126 RRLDVYDFYQLGLGEPYPVSSVHGVGLGDMLDAV 159



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 4/85 (4%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDI 283
           +G  N GKSSL NA+  ++  IV+D+ GTTRD +       +G    + DTAGI++   +
Sbjct: 180 IGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINTQFTAKDGREFTMVDTAGIKKKGKL 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E+  + R+   ++++D++L++
Sbjct: 240 YENTERYALMRSMRAIDDSDVVLVV 264


>gi|167754612|ref|ZP_02426739.1| hypothetical protein CLORAM_00114 [Clostridium ramosum DSM 1402]
 gi|237733753|ref|ZP_04564234.1| GTP-binding protein engA [Mollicutes bacterium D7]
 gi|167705444|gb|EDS20023.1| hypothetical protein CLORAM_00114 [Clostridium ramosum DSM 1402]
 gi|229383091|gb|EEO33182.1| GTP-binding protein engA [Coprobacillus sp. D7]
          Length = 434

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 3/90 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL NA+  ++  IV++I GTTRD +      +G   ++ DTAG+R+   +
Sbjct: 178 IIGRPNVGKSSLTNAILGEERVIVSNIEGTTRDAIDTAFVKDGQKYRVIDTAGMRKKGKV 237

Query: 284 ---VEKEGIKRTFLEVENADLILLLKEINS 310
              +EK  I R    +E +D+I+++ + N 
Sbjct: 238 YENIEKYSILRALSSIEKSDVIVVVIDGNQ 267



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G +N GKS++FN +  + ++IV D+ G TRD +           ++ DT GI   D
Sbjct: 5   VAIVGRANVGKSTIFNRIVGERISIVEDVAGVTRDRIYATATWLTKEFRLIDTGGIELQD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
                +   +  + +E ADLI+ +  +N ++ I+
Sbjct: 65  ASFTAQIKMQAEIAIEEADLIVFV--VNGREGIT 96


>gi|308189663|ref|YP_003922594.1| GTP-binding protein [Mycoplasma fermentans JER]
 gi|319776823|ref|YP_004136474.1| gtp-binding protein era [Mycoplasma fermentans M64]
 gi|307624405|gb|ADN68710.1| GTP-binding protein [Mycoplasma fermentans JER]
 gi|318037898|gb|ADV34097.1| GTP-binding protein Era [Mycoplasma fermentans M64]
          Length = 289

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL N + K DVAIVT++P TTRD +    + + + +   DT GI +  ++
Sbjct: 8   IIGRPNVGKSSLINQIVKYDVAIVTNVPQTTRDQIVGVYNEDDFQLVFVDTPGIHKPLNL 67

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311
           + +   K  F   ++ D ++ L  +N K
Sbjct: 68  LGEALNKSAFESTKDVDCLIFLSPVNEK 95


>gi|239917900|ref|YP_002957458.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665]
 gi|281413599|ref|ZP_06245341.1| GTP-binding protein EngA [Micrococcus luteus NCTC 2665]
 gi|239839107|gb|ACS30904.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665]
          Length = 512

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 213 GEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           G + R G  +I ++G  N GKSSL N LA  D  +V D+ GTTRD +   ++L G L + 
Sbjct: 242 GLVPRGGPRRIALVGRPNVGKSSLLNKLAGSDRVVVDDLAGTTRDPVDELVELGGRLWRF 301

Query: 272 SDTAGIR 278
            DTAGIR
Sbjct: 302 VDTAGIR 308



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 77  LAIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDAEWNGREFTVVDTGGWEH-- 134

Query: 282 DIVEKEGIKRTFLE 295
              + +GI R   E
Sbjct: 135 ---DAKGIHRRVAE 145


>gi|288941004|ref|YP_003443244.1| ribosome-associated GTPase EngA [Allochromatium vinosum DSM 180]
 gi|288896376|gb|ADC62212.1| ribosome-associated GTPase EngA [Allochromatium vinosum DSM 180]
          Length = 467

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIR 278
           K+ ++G  NAGKS+L N L  ++  +  D PGTTRD + I  +  G+  + +  DTAG+R
Sbjct: 179 KVAVVGRPNAGKSTLINRLLGEERQVTFDSPGTTRDSIFIPFERPGHDQRYTLIDTAGLR 238

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305
                 D +EK  + +T   +E A++I+L+
Sbjct: 239 RRARVHDPIEKFSVIKTLQAIEEANVIILV 268



 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD       +      I DT GI    
Sbjct: 5   ITLIGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRQYGIGRIGPRPYVIVDTGGIGTAA 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322
           + +E    ++    VE AD +L + +    ++   P++ID 
Sbjct: 65  EGIEALMERQVQRAVEEADHLLFMVDT---RDGCTPEDIDI 102


>gi|311110809|ref|ZP_07712206.1| ribosome-associated GTPase EngA [Lactobacillus gasseri MV-22]
 gi|311065963|gb|EFQ46303.1| ribosome-associated GTPase EngA [Lactobacillus gasseri MV-22]
          Length = 389

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 29/179 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  +   IV++I GTTRD +      +G    I DTAGIR    +
Sbjct: 133 VIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKV 192

Query: 284 VEKE---GIKRTFLEVENADLILLLKEINS------KKEISFPKNI--DFIFIGTKSDLY 332
            EK     + R    +E +D+ LL+ + ++      K    +  +     I +  K DL 
Sbjct: 193 YEKTEKYSVLRAISAIEESDITLLVLDASTGIREQDKHVAGYAHDAGRGVIIVVNKWDLP 252

Query: 333 STYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
             Y+           +E+ +L       +S+ TG+ + +++  +K +  N+ +++  S+
Sbjct: 253 KKYSTSMKDFEDTIRQEFQYLDYAPIVFVSAKTGQRVPDILKLVKEVHDNQTRRIKSSV 311


>gi|302390495|ref|YP_003826316.1| iron-only hydrogenase maturation protein HydF [Thermosediminibacter
           oceani DSM 16646]
 gi|302201123|gb|ADL08693.1| iron-only hydrogenase maturation protein HydF [Thermosediminibacter
           oceani DSM 16646]
          Length = 414

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 24/171 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  NAGKSSL NA+  +D+A+V+ + GTT D +   ++L     V I DTAGI + 
Sbjct: 17  IAIFGRRNAGKSSLINAITNQDIALVSSVAGTTTDPVFKAMELLPIGPVVIIDTAGIDDE 76

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSD 330
            ++ E   IK+T+  +   DL +L+  I+    ++            KNI  + +  KSD
Sbjct: 77  GELGELR-IKKTYQVLNKTDLAVLI--IDGGMGVTGYDLEILERIREKNIPVVGVINKSD 133

Query: 331 LYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +     EE +            +S+   +G+EEL  +I +   + F + P 
Sbjct: 134 VAGYTPEEKETWEKRLGLKLVEVSALKRQGIEELKREIINKAPSSFAERPL 184


>gi|329850909|ref|ZP_08265754.1| ribosome-associated GTPase EngA [Asticcacaulis biprosthecum C19]
 gi|328841224|gb|EGF90795.1| ribosome-associated GTPase EngA [Asticcacaulis biprosthecum C19]
          Length = 556

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 6/108 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           KI I+G  N GKS+LFN LA K +AIV D PG TRD      +L    + + DTAG  + 
Sbjct: 4   KIAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYATGNLGDIPLLLIDTAGFEDL 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT 327
           TDD +E     +T L ++  D+   +  +++++ ++    +D IF  T
Sbjct: 64  TDDSLESRMRVQTELALDECDVAFFV--VDAREGVT---PLDRIFAAT 106



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N L  ++  +     G TRD +++D   EG  +++ DTAG+R  
Sbjct: 186 RIAIIGRPNAGKSTLINKLLGEERLLTGPEAGITRDSISVDWLYEGRTIRLVDTAGLRRK 245

Query: 281 DDIVEK 286
             + EK
Sbjct: 246 ARVQEK 251


>gi|256846327|ref|ZP_05551784.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_36A2]
 gi|256718096|gb|EEU31652.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_36A2]
          Length = 440

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ +L+
Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDAEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFIVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D  +  F G G E L+
Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143


>gi|288575053|ref|ZP_06393410.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570794|gb|EFC92351.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 444

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 5/86 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG--IRE 279
           + I+G  N GKSSLFN L  +  AIV D+PG TRD L   ++  G    + DT G  +R+
Sbjct: 4   VTIVGRPNVGKSSLFNRLIGERRAIVDDVPGVTRDRLYGQVEWRGNSFYLVDTGGLLLRD 63

Query: 280 TDDIVEKEGIKRTFLE-VENADLILL 304
            D I+  EG+K   ++ +E +D+ILL
Sbjct: 64  EDPIM--EGMKGQIVQAMEESDVILL 87



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 55/89 (61%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           K+ ++G  N GKSS+ N L  ++ ++V+D+PGTTRD +   ++L +G  +++ DTAG+R 
Sbjct: 177 KVALVGRPNVGKSSILNRLLGENRSLVSDVPGTTRDSIDSLMELDDGRKLRLIDTAGLRR 236

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLL 305
                D +E     RT   ++ +D+ +L+
Sbjct: 237 KSRFKDDIEYYSFVRTMESIDRSDVSILV 265


>gi|77405817|ref|ZP_00782901.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae
           H36B]
 gi|77414237|ref|ZP_00790399.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae 515]
 gi|77159726|gb|EAO70875.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae 515]
 gi|77175604|gb|EAO78389.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae
           H36B]
 gi|319745628|gb|EFV97929.1| ribosome-associated GTPase EngA [Streptococcus agalactiae ATCC
           13813]
          Length = 436

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + + GTTRD +  + +D +G    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTNFVDSQGQEYTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +    EK  + R+   ++ +D++L++  IN+++ I                       EY
Sbjct: 239 VYENTEKYSVMRSMRAIDRSDVVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  +I
Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTI 299



 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFV 89


>gi|293374967|ref|ZP_06621262.1| ribosome-associated GTPase EngA [Turicibacter sanguinis PC909]
 gi|325843340|ref|ZP_08167923.1| ribosome biogenesis GTPase Der [Turicibacter sp. HGF1]
 gi|292646377|gb|EFF64392.1| ribosome-associated GTPase EngA [Turicibacter sanguinis PC909]
 gi|325489369|gb|EGC91742.1| ribosome biogenesis GTPase Der [Turicibacter sp. HGF1]
          Length = 436

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NAL  ++  IV+DI GTTRD +  +   +G    + DTAG+R+ 
Sbjct: 177 KFSLIGRPNVGKSSLTNALLGEERVIVSDIAGTTRDAIDTEFTKDGQKYVVIDTAGMRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E +D+ L++
Sbjct: 237 GKVYETTEKYSVLRALSAIERSDVCLIV 264



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +    V+IV D PG TRD +    +       + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGSRVSIVEDEPGITRDRIYSSGEWLTRKFNVIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++   +  + ++ AD+I+ +
Sbjct: 66  EPFMRQIKYQAEIAMDEADVIVFV 89


>gi|260583467|ref|ZP_05851215.1| ribosome-associated GTPase EngA [Granulicatella elegans ATCC
           700633]
 gi|260158093|gb|EEW93161.1| ribosome-associated GTPase EngA [Granulicatella elegans ATCC
           700633]
          Length = 437

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 4/85 (4%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDDI 283
           +G  N GKSSL NA+  ++  IV+++ GTTRD +     D EG + K+ DTAGIR+   +
Sbjct: 181 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAIDTSFTDEEGTIFKMIDTAGIRKKGRV 240

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D++ ++
Sbjct: 241 FESTEKYSVLRALRAIERSDIVCVV 265



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + ++IV DI G TRD +  + +  G+   I DT GI  TD
Sbjct: 6   IAIVGRPNVGKSTIFNRVVGERISIVEDIAGVTRDRIYSEGEWLGHQFHIIDTGGIDITD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
           +        +  + +E AD+I+ L  +
Sbjct: 66  EPFMSNIRMQAEIAMEEADVIIFLTSV 92


>gi|254460403|ref|ZP_05073819.1| GTP-binding protein [Rhodobacterales bacterium HTCC2083]
 gi|206676992|gb|EDZ41479.1| GTP-binding protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 490

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   D  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGDARLADLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TD+ ++    + T   V+ AD+ L +
Sbjct: 63  ATDESLQGRMRRLTERAVDMADICLFM 89



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I ++G  NAGKS+L N +  +D  +     G TRD +++  +  G  ++I DTAG+R  
Sbjct: 203 QIAVVGRPNAGKSTLINMIMGEDRLLTGPEAGITRDAISLRSEWNGTHIRIFDTAGMRKK 262

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +  D +EK  +      V+ A+++++L
Sbjct: 263 AKVQDKLEKLSVSDGLRAVKFAEVVVVL 290


>gi|89068274|ref|ZP_01155684.1| GTP-binding protein EngA [Oceanicola granulosus HTCC2516]
 gi|89046191|gb|EAR52249.1| GTP-binding protein EngA [Oceanicola granulosus HTCC2516]
          Length = 488

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLADLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TD+ ++    + T   VE AD+ L L
Sbjct: 63  ATDESLQGRMRRLTERAVEMADVCLFL 89



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 41/66 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N +  ++  +     G TRD +++ L+ EG  V++ DTAG+R+ 
Sbjct: 201 QVAVVGRPNAGKSTLINRILGEERLLTGPEAGITRDSISLTLEWEGTPVRLFDTAGMRKR 260

Query: 281 DDIVEK 286
             + +K
Sbjct: 261 AKVQDK 266


>gi|296328064|ref|ZP_06870598.1| ribosome-associated GTPase EngA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154840|gb|EFG95623.1| ribosome-associated GTPase EngA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 440

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ +L+
Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D  +  F G G E L+
Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143


>gi|256027086|ref|ZP_05440920.1| GTP-binding protein [Fusobacterium sp. D11]
 gi|289765066|ref|ZP_06524444.1| GTP-binding protein [Fusobacterium sp. D11]
 gi|289716621|gb|EFD80633.1| GTP-binding protein [Fusobacterium sp. D11]
          Length = 440

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ +L+
Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D  +  F G G E L+
Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143


>gi|318042392|ref|ZP_07974348.1| GTP-binding protein Der [Synechococcus sp. CB0101]
          Length = 454

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 3/91 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD +   ++ EG+  KI DTAGIR  
Sbjct: 178 QLAIIGRPNVGKSSLLNAICGEKRAIVSPIRGTTRDTIDTTIEREGHTWKILDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEI 308
             +    E  GI R+F  +E +D+ +L+ ++
Sbjct: 238 RSVNYGPEFFGINRSFKAIERSDVCVLVIDV 268



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L K   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCKSREAIVHDEPGVTRDRTYQDGYWRDRHFKVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|303248222|ref|ZP_07334485.1| ribosome-associated GTPase EngA [Desulfovibrio fructosovorans JJ]
 gi|302490360|gb|EFL50271.1| ribosome-associated GTPase EngA [Desulfovibrio fructosovorans JJ]
          Length = 443

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN LAK+  AI  D PG TRD L   ++L   +V + DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNRLAKRPKAITHDRPGVTRDRLEATVELGDRIVTLIDTGGM---- 60

Query: 282 DIVEKEGIKRTF-----LEVENADLILLL 305
           D    EG++R       + +  AD++L L
Sbjct: 61  DFDAPEGLERQIVVQAEIALTMADVVLFL 89



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ +LG  NAGKSSL N L  ++  IV+D+ GTTRD + + L   G      DTAG+R
Sbjct: 180 GIRLAVLGRPNAGKSSLVNELLGQERLIVSDVAGTTRDAVDVALVKNGRRYVFVDTAGVR 239

Query: 279 ETDDIVEKEGIKR 291
           +   I   +G++R
Sbjct: 240 KRTRIT--DGLER 250


>gi|260496851|ref|ZP_05815971.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_33]
 gi|260196593|gb|EEW94120.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_33]
          Length = 440

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ +L+
Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D  +  F G G E L+
Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143


>gi|116334903|ref|YP_802398.1| tRNA modification GTPase [Candidatus Carsonella ruddii PV]
 gi|123126218|sp|Q05FY9|MNME_CARRP RecName: Full=tRNA modification GTPase mnmE
 gi|116235184|dbj|BAF35032.1| tRNA modification GTPase [Candidatus Carsonella ruddii PV]
          Length = 438

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 33/245 (13%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++  + I+ILG  N GKS+LFN +  +  +IVT+IPGTT+++++  + +    +K+ DTA
Sbjct: 207 LKKNFTIMILGRRNVGKSTLFNKICAQYDSIVTNIPGTTKNIISKKIKILSKKIKMMDTA 266

Query: 276 GIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF---------IFI 325
           G++  T +++EK GI +   ++   +LIL + +  + K I F   IDF         I +
Sbjct: 267 GLKIRTKNLIEKIGIIKNINKIYQGNLILYMIDKFNIKNIFFNIPIDFIDKIKLNELIIL 326

Query: 326 GTKSDLYS------TYTEEYDHLISSFTGEGLEELINKIKSILSNK-FKKLPFS---IPS 375
             KSD+                LISS  G  ++ L   I  I+ NK F K  +S   I  
Sbjct: 327 VNKSDILGKEEGVFKIKNILIILISSKNGTFIKNLKCFINKIVDNKDFSKNNYSDVKILF 386

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435
           +K   ++              E  C  D++   L     ++ K+TG    +++++  F  
Sbjct: 387 NKFSFFY-------------KEFSCNYDLVLSKLIDFQKNIFKLTGNFTNKKIINSCFRN 433

Query: 436 FCIGK 440
           FCIGK
Sbjct: 434 FCIGK 438


>gi|87161650|ref|YP_494061.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|161509642|ref|YP_001575301.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294848438|ref|ZP_06789184.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9754]
 gi|123485886|sp|Q2FGW7|DER_STAA3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037166|sp|A8Z454|DER_STAAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|87127624|gb|ABD22138.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|160368451|gb|ABX29422.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294824464|gb|EFG40887.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9754]
 gi|315197778|gb|EFU28112.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320142720|gb|EFW34523.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 436

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD +  +   +G    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264



 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + ++ A +I+ +
Sbjct: 66  APFQTQIRAQAEIAIDEAYVIIFM 89


>gi|332359145|gb|EGJ36966.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK49]
          Length = 436

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGIIIVVNKWDTL 299



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|292492503|ref|YP_003527942.1| small GTP-binding protein [Nitrosococcus halophilus Nc4]
 gi|291581098|gb|ADE15555.1| small GTP-binding protein [Nitrosococcus halophilus Nc4]
          Length = 464

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G +  ++G  N GKS+L N L  ++  +  + PGTTRD + I    +G    + DTAGI
Sbjct: 175 RGLQFAVVGRPNVGKSTLVNRLLGEERVLSFEAPGTTRDSIAIPFCHQGQDYTLVDTAGI 234

Query: 278 RETD---DIVEKEGIKRTFLEVENADLILLL 305
           R      D++EK  I +T   +E A +++L+
Sbjct: 235 RRRSKILDMLEKFSIAKTLEAIEAAQVVILV 265



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           + ++G  N GKS+LFN L +   A+V D PG TRD          + +LV   DT GI E
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADQPGVTRDRKYGIARYGEQSFLV--VDTGGITE 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            +  V +    +  L +E AD+IL L
Sbjct: 63  QESGVGELMRVQAQLAIEEADIILFL 88


>gi|237743522|ref|ZP_04574003.1| GTP-binding protein [Fusobacterium sp. 7_1]
 gi|229433301|gb|EEO43513.1| GTP-binding protein [Fusobacterium sp. 7_1]
          Length = 440

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ +L+
Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D  +  F G G E L+
Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143


>gi|332969954|gb|EGK08954.1| ribosome-associated GTPase EngA [Kingella kingae ATCC 23330]
          Length = 489

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 58/96 (60%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + +     I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFERDNKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D+ VEK  + +    VE A++ +L+  ++++++I+
Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L K   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTKTKDALVHDLPGLTRDRHYGHAKVGSKPYLVVDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVIFL 89


>gi|218282475|ref|ZP_03488734.1| hypothetical protein EUBIFOR_01316 [Eubacterium biforme DSM 3989]
 gi|218216571|gb|EEC90109.1| hypothetical protein EUBIFOR_01316 [Eubacterium biforme DSM 3989]
          Length = 435

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL N++ K+D  IV+++ GTTRD +     ++     I DTAGIR+   I
Sbjct: 179 VIGRPNVGKSSLVNSILKEDRVIVSNVEGTTRDAIDTPFHVDDKEYMIIDTAGIRKKGKI 238

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
              +EK  I R    ++ ++++L L
Sbjct: 239 YENIEKYSILRALSAIDRSNVVLFL 263



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN L  +  +IV D PG TRD +  +++      ++ DT GI+  D
Sbjct: 6   VAIVGRPNVGKSTIFNRLIGQRKSIVDDTPGVTRDRIYGEVEWLTQTFRLIDTGGIQIED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               +E   +  + +E AD+I+ L
Sbjct: 66  QAFAQEINMQVDIAIEEADVIIFL 89


>gi|148556031|ref|YP_001263613.1| GTP-binding protein EngA [Sphingomonas wittichii RW1]
 gi|148501221|gb|ABQ69475.1| small GTP-binding protein [Sphingomonas wittichii RW1]
          Length = 454

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G   ++ DTAG  ETD
Sbjct: 7   VAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDATLIGLDFRVIDTAGF-ETD 65

Query: 282 DIVEKEGIKR--TFLEVENADLILLL 305
           D     G  R  T   V  AD+ L +
Sbjct: 66  DPQTLPGRMRAQTQAAVREADVALFM 91



 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-----YLVKISDTA 275
           K+ I+G  NAGKS+L N +  +   I     G TRD + ID D          +++ DTA
Sbjct: 186 KLAIVGRPNAGKSTLINKILGEQRMITGPEAGITRDSIAIDWDWHAPDGTVRPIRLIDTA 245

Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           G+R   +  D +EK  +      V+ A++++LL
Sbjct: 246 GMRKRAKVQDKLEKLSVADGLRAVDFAEVVVLL 278


>gi|323342077|ref|ZP_08082310.1| ribosome-associated GTPase EngA [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464502|gb|EFY09695.1| ribosome-associated GTPase EngA [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 436

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI- 283
           +G  N GKSSL NA+  +D  IV++I GTTRD +     +      I DTAGIR+   + 
Sbjct: 180 IGRPNVGKSSLVNAMLNQDRVIVSNIEGTTRDAIDTPFRMNERDYVIIDTAGIRKRGKVY 239

Query: 284 --VEKEGIKRTFLEVENADLILLL 305
             VEK  + R    ++ +D++L L
Sbjct: 240 EDVEKYSVLRAMSAIDRSDVVLFL 263



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 30/169 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN +  + ++IV D  G TRD L          ++  DT GI+   
Sbjct: 6   VAIVGRPNVGKSSLFNRIMGERISIVHDEAGVTRDRLYGKTTWLTKDLRFIDTGGIQMEG 65

Query: 282 DIVEKEGIKRTFLEVENADLIL------------------LLKEINSKKEISFPKNIDFI 323
              ++E   +  + ++ AD+IL                  LL++ N    I+  K  D  
Sbjct: 66  QPFQEEIKMQVDIAIDEADIILFVVSAKEGMTTDDEFIARLLRQTNKPVIIAANKVDDVQ 125

Query: 324 FIGTKSDLYSTYTEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLP 370
           F+   SD+Y  Y   YD    +S   G GL +L++++        KKLP
Sbjct: 126 FV---SDIYEFYALGYDEPFAVSCEHGIGLGDLLDEV-------IKKLP 164


>gi|300022385|ref|YP_003754996.1| ribosome-associated GTPase EngA [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524206|gb|ADJ22675.1| ribosome-associated GTPase EngA [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 460

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + I+G  N GKS+LFN L     A+V+D+PG TRD      DL G  +++ DTAG+ E  
Sbjct: 2   VAIVGRPNVGKSTLFNRLTGTRAALVSDLPGLTRDRRDGVTDLFGVNLRLIDTAGLEEAR 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
              +     K+T   +E ADL+L +
Sbjct: 62  QGSIADRMRKQTEQAIEAADLVLFV 86



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 38/65 (58%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L NAL  +D  I    PG TRD +  +L  +G  + + DTAG+R  
Sbjct: 195 RVAIVGRPNAGKSTLVNALLGEDRMITGPEPGLTRDSVASELSYKGQSILLFDTAGLRRK 254

Query: 281 DDIVE 285
             I E
Sbjct: 255 AKITE 259


>gi|212715828|ref|ZP_03323956.1| hypothetical protein BIFCAT_00729 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661195|gb|EEB21770.1| hypothetical protein BIFCAT_00729 [Bifidobacterium catenulatum DSM
           16992]
          Length = 709

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 19/177 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI-----SFPKNIDFIFIGTKSDL 331
           + +E     +  + V+ AD ++L+ +      N+ + I     S  K +  + +    D 
Sbjct: 335 EGIESAIASQAQIAVQLADAVVLVVDGQVGLTNTDERIVKMLRSSGKPV-TLAVNKVDDR 393

Query: 332 YSTY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            S Y T E+  +       IS+  G G+ EL++     L    K   F  PSH R +
Sbjct: 394 ESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALESLKKAEKTSGFLTPSHLRRV 450



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA ++  +V D+ GTTRD +   + +D E +L    DTAGI+
Sbjct: 449 RVALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWL--FIDTAGIK 506


>gi|255534810|ref|YP_003095181.1| GTP-binding protein EngA [Flavobacteriaceae bacterium 3519-10]
 gi|255341006|gb|ACU07119.1| GTP-binding protein EngA [Flavobacteriaceae bacterium 3519-10]
          Length = 436

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I G  N GKS+L NAL  K   IVTD+ GTTRD +    +  G+   + DTAG+R  
Sbjct: 177 KITIAGRPNVGKSTLTNALLDKQQNIVTDVAGTTRDSIQTLYNKFGHEFVLVDTAGMRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E +D+++++
Sbjct: 237 AKVKEDLEFYSVMRSIRSIEYSDVVIIM 264



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN   ++  AIV    G TRD      D  G    + DT G    T
Sbjct: 5   VAIVGRPNVGKSTLFNRFLERREAIVDSTAGVTRDRHYGKSDWNGVEFTVIDTGGYEVNT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +D+ ++E  K+  L V+ A  I+ +
Sbjct: 65  EDVFQEEITKQVQLAVDEATSIIFM 89


>gi|320140353|gb|EFW32209.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 436

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD +  +   +G    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264



 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + ++ A +I+ +
Sbjct: 66  APFQTQIRAQAEIAIDEAYVIIFM 89


>gi|288573910|ref|ZP_06392267.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569651|gb|EFC91208.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 407

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 21/151 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279
           +VI G  N+GKSSL N L +   +IV+D PGTT D +   +++ G L  V + DTAG  +
Sbjct: 12  LVIYGLRNSGKSSLTNNLLRTSASIVSDRPGTTTDPVIHAMEM-GPLGPVSVVDTAGFDD 70

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDL 331
            DD +    ++R+  ++E AD++L +        +K+E +  K    N+  + + T +D 
Sbjct: 71  FDDELGSMRVERSERKLETADIVLFVTRGDIPPTAKEETAVEKLRRRNLPCLTVLTFAD- 129

Query: 332 YSTYTEEYDHLISSF--------TGEGLEEL 354
            S   +E  H  S F        +G GLE+L
Sbjct: 130 -SGVCDEKRHFASGFRRIAVDNRSGFGLEDL 159


>gi|19703515|ref|NP_603077.1| GTP-binding protein EngA [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|26006718|sp|Q8RGV7|DER_FUSNN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|19713605|gb|AAL94376.1| GTP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 440

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ +L+
Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   IAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D  +  F G G E L+
Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143


>gi|303284441|ref|XP_003061511.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456841|gb|EEH54141.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 470

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKI 271
           GE +    K+ I+G  N GKSSL N L+    AIV+D  GTTRD +  D+ D +G    +
Sbjct: 193 GEEVAEPLKVAIVGRPNVGKSSLLNQLSGDARAIVSDHSGTTRDTIDSDVTDADGNKFTL 252

Query: 272 SDTAGIRETDDIV------EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
            DTAGIR    +       E+  + R    +  A++++L+  I++++    P   DF+ 
Sbjct: 253 IDTAGIRRRTAVAAGKDKPEELSVGRALQAMRRAEVVVLV--IDAEEG---PSQQDFVL 306



 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           ++ I+G  N GKS+LFN L     AIV D PG TRD + +
Sbjct: 5   RVAIVGRPNVGKSALFNRLTGTKRAIVYDQPGITRDRMYV 44


>gi|212212370|ref|YP_002303306.1| GTP-binding protein EngA [Coxiella burnetii CbuG_Q212]
 gi|238058972|sp|B6IZN3|DER_COXB2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|212010780|gb|ACJ18161.1| GTP-binding protein [Coxiella burnetii CbuG_Q212]
          Length = 443

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI ++G  N GKS+L N L  ++  IV D PGTTRD + I          + DTAGIR
Sbjct: 175 GIKIAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRDSIYIPFARNDENYTLIDTAGIR 234

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305
              +  D VEK  + ++   +  AD+++ L
Sbjct: 235 RRAKIQDYVEKFSMIKSLQAMHAADVVIFL 264



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L K   A+V D+PG TRD    +  ++   + + DT G+ +T+
Sbjct: 5   IAIVGRPNVGKSTLFNYLTKSRAALVADVPGVTRDRQYGETTIDSQRLLLVDTGGLVDTE 64

Query: 282 DIVEKEGIKRTFLE--VENADLILLL 305
           +  E   +  T +E  ++ +D IL L
Sbjct: 65  N-KEVAPLAETQVEQAIDESDCILFL 89


>gi|254302562|ref|ZP_04969920.1| possible GTPase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148322754|gb|EDK88004.1| possible GTPase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 440

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ +L+
Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S       EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDDEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D  +  F G G E L+
Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143


>gi|302333085|gb|ADL23278.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 436

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD +  +   +G    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 21/158 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN----------------SKKEISFPKN-IDFIF 324
              + +   +  + ++ AD+I+ +  +                 SKK +    N +D + 
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNME 125

Query: 325 IGTKSDLYSTYTEEY--DHLISSFTGEGLEELINKIKS 360
           +  ++D+Y  Y+  +   + IS   G GL +L++ + S
Sbjct: 126 M--RTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVS 161


>gi|57239243|ref|YP_180379.1| GTP-binding protein EngA [Ehrlichia ruminantium str. Welgevonden]
 gi|58579205|ref|YP_197417.1| GTP-binding protein EngA [Ehrlichia ruminantium str. Welgevonden]
 gi|57161322|emb|CAH58245.1| putative GTP binding protein EngA [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417831|emb|CAI27035.1| Probable GTP-binding protein engA [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 439

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  NAGKS+  N L  +D  IV+  PGTTRD + I+ + +     + DTAG+R+ 
Sbjct: 175 KISIVGRPNAGKSTFVNRLVGEDRMIVSSEPGTTRDAVDIEYEYQDQKFILIDTAGMRKK 234

Query: 281 DDIVEKEGIKRTFLEVEN---ADLILLL 305
             I E   +   +  +E+   +D+I+L+
Sbjct: 235 AKITENIEVTSVYKSIESINRSDIIILM 262



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 8/104 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--R 278
           K+ I+G  N GKS++FN L KK  AIV+++P  TRD      DL G   K+ DT G+  R
Sbjct: 3   KVAIVGLPNVGKSTIFNRLVKKRSAIVSNVPNLTRDRREGSADLCGLKFKVIDTGGVDYR 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322
               ++  + +K   L +E  D+I  + +   +++I   KNI+F
Sbjct: 63  IKLSVLILDQVK---LAIEACDVIFFVVDARVERDI---KNIEF 100


>gi|25011707|ref|NP_736102.1| GTP-binding protein EngA [Streptococcus agalactiae NEM316]
 gi|41017045|sp|Q8E3T9|DER_STRA3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|24413247|emb|CAD47326.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 436

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + + GTTRD +  + +D +G    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTNFVDSQGQEYTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +    EK  + R+   ++ +D++L++  IN+++ I                       EY
Sbjct: 239 VYENTEKYSVMRSMRAIDRSDVVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  +I
Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTI 299



 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFV 89


>gi|15924465|ref|NP_371999.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927056|ref|NP_374589.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus N315]
 gi|21283093|ref|NP_646181.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus MW2]
 gi|49483662|ref|YP_040886.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486314|ref|YP_043535.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650430|ref|YP_186359.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus COL]
 gi|88195209|ref|YP_500010.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|148267959|ref|YP_001246902.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus JH9]
 gi|150394023|ref|YP_001316698.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus JH1]
 gi|151221596|ref|YP_001332418.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156979794|ref|YP_001442053.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus Mu3]
 gi|221140958|ref|ZP_03565451.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253315982|ref|ZP_04839195.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253732117|ref|ZP_04866282.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733278|ref|ZP_04867443.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006261|ref|ZP_05144862.2| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425539|ref|ZP_05601964.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428198|ref|ZP_05604596.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257430828|ref|ZP_05607210.1| small GTP-binding protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433587|ref|ZP_05609945.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436428|ref|ZP_05612475.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus M876]
 gi|257795470|ref|ZP_05644449.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9781]
 gi|258413278|ref|ZP_05681554.1| small GTP-binding protein [Staphylococcus aureus A9763]
 gi|258420615|ref|ZP_05683557.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9719]
 gi|258422494|ref|ZP_05685402.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9635]
 gi|258426810|ref|ZP_05688030.1| GTP-binding protein engA [Staphylococcus aureus A9299]
 gi|258444808|ref|ZP_05693137.1| GTP-binding protein engA [Staphylococcus aureus A8115]
 gi|258447358|ref|ZP_05695502.1| small GTP-binding protein [Staphylococcus aureus A6300]
 gi|258449757|ref|ZP_05697858.1| GTP-binding protein engA [Staphylococcus aureus A6224]
 gi|258451133|ref|ZP_05699168.1| GTP-binding protein engA [Staphylococcus aureus A5948]
 gi|258454573|ref|ZP_05702537.1| ribosome-associated GTPase EngA [Staphylococcus aureus A5937]
 gi|262048997|ref|ZP_06021876.1| GTP-binding protein EngA [Staphylococcus aureus D30]
 gi|262051644|ref|ZP_06023864.1| GTP-binding protein EngA [Staphylococcus aureus 930918-3]
 gi|269203100|ref|YP_003282369.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus ED98]
 gi|282892972|ref|ZP_06301207.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8117]
 gi|282904057|ref|ZP_06311945.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905821|ref|ZP_06313676.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282911052|ref|ZP_06318854.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914265|ref|ZP_06322052.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919188|ref|ZP_06326923.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282921722|ref|ZP_06329439.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9765]
 gi|282924372|ref|ZP_06332046.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus C101]
 gi|282928003|ref|ZP_06335612.1| ribosome-associated GTPase EngA [Staphylococcus aureus A10102]
 gi|283958239|ref|ZP_06375690.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024473|ref|ZP_06378871.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus 132]
 gi|293501290|ref|ZP_06667141.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510252|ref|ZP_06668960.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526847|ref|ZP_06671531.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295407224|ref|ZP_06817024.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8819]
 gi|295427983|ref|ZP_06820615.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296275328|ref|ZP_06857835.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus MR1]
 gi|297207866|ref|ZP_06924299.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297244648|ref|ZP_06928531.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8796]
 gi|300911951|ref|ZP_07129394.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304380942|ref|ZP_07363601.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|54037051|sp|P64060|DER_STAAN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|54037052|sp|P64061|DER_STAAW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|54040975|sp|P64059|DER_STAAM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|56748972|sp|Q6G988|DER_STAAS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|56749026|sp|Q6GGT6|DER_STAAR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|71151865|sp|Q5HFU8|DER_STAAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|122539535|sp|Q2FYG0|DER_STAA8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225860|sp|A7X2I1|DER_STAA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|172048892|sp|A6QH24|DER_STAAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037164|sp|A6U1U3|DER_STAA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037165|sp|A5IT03|DER_STAA9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|13701274|dbj|BAB42568.1| SA1307 [Staphylococcus aureus subsp. aureus N315]
 gi|14247246|dbj|BAB57637.1| GTP-binding protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204533|dbj|BAB95229.1| MW1364 [Staphylococcus aureus subsp. aureus MW2]
 gi|49241791|emb|CAG40482.1| putative GTPase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244757|emb|CAG43193.1| putative GTPase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284616|gb|AAW36710.1| GTP-binding protein, Era/TrmE family [Staphylococcus aureus subsp.
           aureus COL]
 gi|87202767|gb|ABD30577.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741028|gb|ABQ49326.1| small GTP-binding protein [Staphylococcus aureus subsp. aureus JH9]
 gi|149946475|gb|ABR52411.1| small GTP-binding protein [Staphylococcus aureus subsp. aureus JH1]
 gi|150374396|dbj|BAF67656.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156721929|dbj|BAF78346.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253724164|gb|EES92893.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728818|gb|EES97547.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271996|gb|EEV04134.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275039|gb|EEV06526.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278956|gb|EEV09575.1| small GTP-binding protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281680|gb|EEV11817.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284710|gb|EEV14830.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus M876]
 gi|257789442|gb|EEV27782.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9781]
 gi|257839842|gb|EEV64310.1| small GTP-binding protein [Staphylococcus aureus A9763]
 gi|257843563|gb|EEV67970.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9719]
 gi|257847251|gb|EEV71257.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9635]
 gi|257849971|gb|EEV73929.1| GTP-binding protein engA [Staphylococcus aureus A9299]
 gi|257850301|gb|EEV74254.1| GTP-binding protein engA [Staphylococcus aureus A8115]
 gi|257853549|gb|EEV76508.1| small GTP-binding protein [Staphylococcus aureus A6300]
 gi|257857005|gb|EEV79905.1| GTP-binding protein engA [Staphylococcus aureus A6224]
 gi|257861188|gb|EEV84001.1| GTP-binding protein engA [Staphylococcus aureus A5948]
 gi|257862956|gb|EEV85720.1| ribosome-associated GTPase EngA [Staphylococcus aureus A5937]
 gi|259160485|gb|EEW45509.1| GTP-binding protein EngA [Staphylococcus aureus 930918-3]
 gi|259162929|gb|EEW47492.1| GTP-binding protein EngA [Staphylococcus aureus D30]
 gi|262075390|gb|ACY11363.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus ED98]
 gi|269940966|emb|CBI49350.1| putative GTPase [Staphylococcus aureus subsp. aureus TW20]
 gi|282313759|gb|EFB44152.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316998|gb|EFB47372.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322333|gb|EFB52657.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324747|gb|EFB55057.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282331113|gb|EFB60627.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282590300|gb|EFB95380.1| ribosome-associated GTPase EngA [Staphylococcus aureus A10102]
 gi|282593984|gb|EFB98973.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9765]
 gi|282595675|gb|EFC00639.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764969|gb|EFC05094.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8117]
 gi|283470686|emb|CAQ49897.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790388|gb|EFC29205.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817155|gb|ADC37642.1| GTP-binding protein EngA [Staphylococcus aureus 04-02981]
 gi|290920405|gb|EFD97469.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096295|gb|EFE26556.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467196|gb|EFF09714.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus M809]
 gi|294967937|gb|EFG43966.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8819]
 gi|295128341|gb|EFG57975.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296887440|gb|EFH26340.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297178678|gb|EFH37924.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8796]
 gi|298694764|gb|ADI97986.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300886197|gb|EFK81399.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302751305|gb|ADL65482.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340528|gb|EFM06463.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312438122|gb|ADQ77193.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|312829865|emb|CBX34707.1| small GTP-binding domain protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129191|gb|EFT85186.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195372|gb|EFU25759.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|323439522|gb|EGA97243.1| GTP-binding protein EngA [Staphylococcus aureus O11]
 gi|323442239|gb|EGA99870.1| GTP-binding protein EngA [Staphylococcus aureus O46]
 gi|329314151|gb|AEB88564.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329723199|gb|EGG59730.1| ribosome biogenesis GTPase Der [Staphylococcus aureus subsp. aureus
           21189]
 gi|329727642|gb|EGG64098.1| ribosome biogenesis GTPase Der [Staphylococcus aureus subsp. aureus
           21172]
 gi|329731317|gb|EGG67683.1| ribosome biogenesis GTPase Der [Staphylococcus aureus subsp. aureus
           21193]
          Length = 436

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD +  +   +G    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 21/158 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN----------------SKKEISFPKN-IDFIF 324
              + +   +  + ++ AD+I+ +  +                 SKK +    N +D + 
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNME 125

Query: 325 IGTKSDLYSTYTEEY--DHLISSFTGEGLEELINKIKS 360
           +  ++D+Y  Y+  +   + IS   G GL +L++ + S
Sbjct: 126 M--RTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVS 161


>gi|332977201|gb|EGK13997.1| ribosome-associated GTPase EngA [Desmospora sp. 8437]
          Length = 455

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N +  ++  IV+ + GTTRD +      EG    I DTAG+R+ 
Sbjct: 193 RVSIIGRPNVGKSSLVNRILGEERVIVSPVAGTTRDAVDTPFTHEGQDYVIVDTAGMRKR 252

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E AD++L++
Sbjct: 253 GKVYETTEKYSVLRALRAIERADVVLIV 280



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS+LFN +A + +AIV D PG TRD +    D  G    + DT G+   +
Sbjct: 21  VAIVGRPNVGKSTLFNRIAGERIAIVEDKPGITRDRIYTRGDWSGRHFHVIDTGGLEFGK 80

Query: 280 TDDIVEKEGIK-RTFLEVENADLILLL 305
            D++VE   I+ +  L +E AD+IL +
Sbjct: 81  KDEVVEH--IRHQAELAIEEADVILFM 105


>gi|320534114|ref|ZP_08034655.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133693|gb|EFW26100.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 734

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 11/122 (9%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S EVL+ ++ +  ++S+  +    G++    ++I ++G  N GKSSL N++A ++  +V 
Sbjct: 446 SGEVLDAVMEILPEVSAVAAAAPEGDL----HRIALVGRPNVGKSSLLNSIAGRERVVVN 501

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG-----IKRTFLEVENADLIL 303
           +  GTTRD +   ++L+G      DTAGIR    + +  G     + RT   ++NA++ +
Sbjct: 502 ETAGTTRDPVDEIIELDGRQWVFVDTAGIRRR--VKQSRGADYYAVLRTQGAIDNAEVAV 559

Query: 304 LL 305
           +L
Sbjct: 560 VL 561



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 3/127 (2%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKL--GEIIRNGYKIV-ILGHSNAGKSSLFNA 238
           ED++  + +  L D    + D++   + G L  G+ +  G  ++ ++G  N GKS+L N 
Sbjct: 257 EDLRAQAMRAGLADYELDEEDLALLEADGGLPTGDSVEPGLPVLAVVGRPNVGKSTLVNR 316

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           +  +  A+V D PG TRD ++   +  G    I DT G       ++     +  + VE 
Sbjct: 317 VLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVDVAGLDAAVATQAEIAVEM 376

Query: 299 ADLILLL 305
           AD +LL+
Sbjct: 377 ADAVLLV 383


>gi|238019393|ref|ZP_04599819.1| hypothetical protein VEIDISOL_01257 [Veillonella dispar ATCC 17748]
 gi|237864092|gb|EEP65382.1| hypothetical protein VEIDISOL_01257 [Veillonella dispar ATCC 17748]
          Length = 444

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFNA+  K ++IV DIPG TRD +  D +       + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65

Query: 282 D---IVEKEGIKRTFLEVENADLILLL 305
           D   ++ K    +  L +E AD+IL +
Sbjct: 66  DNSHVIPKMMRLQAELAIEEADVILFV 92



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL  +D  IV+D+ GTTRD +            + DTAG+R   
Sbjct: 181 VAVIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTYWTHGDQKFVLIDTAGMRRKS 240

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            I   VE+  I R+   V+ +D+++L+
Sbjct: 241 KIEEAVERYSIVRSLRSVDRSDIVVLV 267


>gi|218459464|ref|ZP_03499555.1| GTP-binding protein EngA [Rhizobium etli Kim 5]
          Length = 191

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 18/157 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGEARLMGLNFTIIDTAGLEE 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            D + ++     +T   ++ ADL L + +  +          E+   +    + +  KS+
Sbjct: 63  ADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
              + +  YD           IS+  GEG+ +L + I
Sbjct: 123 ARGSDSGFYDAYTLGLGEPKPISAEHGEGMLDLRDAI 159


>gi|223933730|ref|ZP_03625704.1| small GTP-binding protein [Streptococcus suis 89/1591]
 gi|302024351|ref|ZP_07249562.1| GTP-binding protein EngA [Streptococcus suis 05HAS68]
 gi|330833346|ref|YP_004402171.1| GTP-binding protein EngA [Streptococcus suis ST3]
 gi|223897611|gb|EEF63998.1| small GTP-binding protein [Streptococcus suis 89/1591]
 gi|329307569|gb|AEB81985.1| GTP-binding protein EngA [Streptococcus suis ST3]
          Length = 436

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 33/179 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + + GTTRD +     D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFTDPEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    +E +D+IL++  IN+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIERSDVILMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
            EYD  I+ F  E  + +I     I+ NK+  L     + K+    +    +YL  A +
Sbjct: 272 REYDKRIAGFAHEAGKGMI-----IVVNKWDTLEKDNHTMKKWEDDIRDQFQYLSYAPI 325



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|296875953|ref|ZP_06900012.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC
           15912]
 gi|312868488|ref|ZP_07728688.1| ribosome biogenesis GTPase Der [Streptococcus parasanguinis F0405]
 gi|322390089|ref|ZP_08063624.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC
           903]
 gi|296433028|gb|EFH18816.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC
           15912]
 gi|311096233|gb|EFQ54477.1| ribosome biogenesis GTPase Der [Streptococcus parasanguinis F0405]
 gi|321143216|gb|EFX38659.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC
           903]
          Length = 436

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  I    EK  + R    ++ +D++L++  IN+++ I                      
Sbjct: 236 SGKIYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  +I
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTI 299



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATAEWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|168035467|ref|XP_001770231.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678448|gb|EDQ64906.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 542

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 7/91 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  ++  IV+ + GTTRD +  +  D  G  +K+ DTAGIR  
Sbjct: 241 IAIVGKPNVGKSSILNALVGEERTIVSPVSGTTRDAIDTEFADDNGQTLKLIDTAGIRRR 300

Query: 281 DDI------VEKEGIKRTFLEVENADLILLL 305
             +       E   + R F  +  +D++ L+
Sbjct: 301 GAVASAGSRAESLSVNRAFRAIRRSDVVALV 331



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 32/57 (56%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           KI I+G  N GKS+LFN +A  D+AIV D  G TRD L        +   + DT G+
Sbjct: 37  KIAIVGRPNVGKSALFNRIAGGDIAIVHDEAGVTRDRLYTRAFWSTHEFMLVDTGGV 93


>gi|126658269|ref|ZP_01729419.1| GTP-binding protein EngA [Cyanothece sp. CCY0110]
 gi|126620418|gb|EAZ91137.1| GTP-binding protein EngA [Cyanothece sp. CCY0110]
          Length = 452

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + I+G  N GKSSL NA   +  AIV+ I GTTRD +   ++      ++ DTAG
Sbjct: 174 REEINVSIIGRPNVGKSSLLNAFLGEQRAIVSPISGTTRDTIDTVVERGENTYRLIDTAG 233

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           IR   ++    E   I R F  +  AD++LL+
Sbjct: 234 IRRKKNVNYGAEFFSINRAFKAIRRADVVLLV 265



 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LAK   AIV D PG TRD             ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLAKDRQAIVHDQPGITRDRTYRPAFWRDRDFQVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|29654548|ref|NP_820240.1| GTP-binding protein EngA [Coxiella burnetii RSA 493]
 gi|153208833|ref|ZP_01947057.1| GTP-binding protein EngA [Coxiella burnetii 'MSU Goat Q177']
 gi|154706295|ref|YP_001424682.1| GTP-binding protein EngA [Coxiella burnetii Dugway 5J108-111]
 gi|161830868|ref|YP_001597096.1| GTP-binding protein EngA [Coxiella burnetii RSA 331]
 gi|165921454|ref|ZP_02219642.1| GTP-binding protein EngA [Coxiella burnetii RSA 334]
 gi|212218660|ref|YP_002305447.1| GTP-binding protein EngA [Coxiella burnetii CbuK_Q154]
 gi|41017032|sp|Q83C83|DER_COXBU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037144|sp|A9KFU3|DER_COXBN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037145|sp|A9NDV6|DER_COXBR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238058971|sp|B6J7Q3|DER_COXB1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|29541815|gb|AAO90754.1| GTP-binding protein [Coxiella burnetii RSA 493]
 gi|120575684|gb|EAX32308.1| GTP-binding protein EngA [Coxiella burnetii 'MSU Goat Q177']
 gi|154355581|gb|ABS77043.1| GTP-binding protein [Coxiella burnetii Dugway 5J108-111]
 gi|161762735|gb|ABX78377.1| GTP-binding protein EngA [Coxiella burnetii RSA 331]
 gi|165916769|gb|EDR35373.1| GTP-binding protein EngA [Coxiella burnetii RSA 334]
 gi|212012922|gb|ACJ20302.1| GTP-binding protein [Coxiella burnetii CbuK_Q154]
          Length = 443

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI ++G  N GKS+L N L  ++  IV D PGTTRD + I          + DTAGIR
Sbjct: 175 GIKIAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRDSIYIPFARNDENYTLIDTAGIR 234

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305
              +  D VEK  + ++   +  AD+++ L
Sbjct: 235 RRAKIQDYVEKFSMIKSLQAMHAADVVIFL 264



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L K   A+V D+PG TRD    +  ++   + + DT G+ +T+
Sbjct: 5   IAIVGRPNVGKSTLFNYLTKSRAALVADVPGVTRDRQYGETTIDSQRLLLVDTGGLVDTE 64

Query: 282 DIVEKEGIKRTFLE--VENADLILLL 305
           +  E   +  T +E  ++ +D IL L
Sbjct: 65  N-KEVAPLAETQVEQAIDESDCILFL 89


>gi|199598702|ref|ZP_03212116.1| GTP-binding protein EngA [Lactobacillus rhamnosus HN001]
 gi|229552181|ref|ZP_04440906.1| GTP-binding protein EngA [Lactobacillus rhamnosus LMS2-1]
 gi|258508385|ref|YP_003171136.1| GTP-binding protein EngA [Lactobacillus rhamnosus GG]
 gi|258539596|ref|YP_003174095.1| GTP-binding protein EngA [Lactobacillus rhamnosus Lc 705]
 gi|199590390|gb|EDY98482.1| GTP-binding protein EngA [Lactobacillus rhamnosus HN001]
 gi|229314483|gb|EEN80456.1| GTP-binding protein EngA [Lactobacillus rhamnosus LMS2-1]
 gi|257148312|emb|CAR87285.1| GTP-binding protein EngA [Lactobacillus rhamnosus GG]
 gi|257151272|emb|CAR90244.1| GTP-binding protein EngA [Lactobacillus rhamnosus Lc 705]
 gi|259649699|dbj|BAI41861.1| GTP-binding protein EngA [Lactobacillus rhamnosus GG]
          Length = 435

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 5/97 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NA+  ++  IV+ I GTTRD +    + +G    + DTAGIR+ 
Sbjct: 176 KFSLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEADGETFTMIDTAGIRKR 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             +    EK  + R    ++ +D++L +  IN+++ I
Sbjct: 236 GKVYENTEKYAVMRALRAIDRSDVVLFV--INAEEGI 270



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 47/89 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   LAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGKSEWLGKEFAVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           +    +   +  + ++ AD+IL L  I +
Sbjct: 66  EPFLAQIKDQAEIAIDEADVILFLTSIEA 94


>gi|187931320|ref|YP_001891304.1| GTP-binding protein EngA [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|238691534|sp|B2SF94|DER_FRATM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|187712229|gb|ACD30526.1| GTP-binding protein [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 465

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G    I DTAG
Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +R+   +   +EK  + +T   ++++++++ +  +++++ IS
Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280



 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276
           + I+G +N GKS+LFN L     A+V D  G TRD         DLD   YLV   DT G
Sbjct: 5   VAIVGRANVGKSTLFNVLTNSHDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + D   ++   K++ + ++ A+L+  +
Sbjct: 60  ISDKDVGFDEFMAKQSQIAIDEANLVFFV 88


>gi|329770413|ref|ZP_08261795.1| GTP-binding protein engA [Gemella sanguinis M325]
 gi|328836536|gb|EGF86196.1| GTP-binding protein engA [Gemella sanguinis M325]
          Length = 435

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL N +  K+  I ++I GTTRD +  D    G    + DTAGIR+   +
Sbjct: 179 LIGRPNVGKSSLINTILGKERVIASEIAGTTRDAIDTDFKYNGDEYVVIDTAGIRKRGKV 238

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R+   +E +D++L++
Sbjct: 239 YENCEKYSVLRSLKAIERSDVVLVV 263



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +    ++IV D+ G TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGIELED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              +K+   +  L ++ AD+I+ L
Sbjct: 66  TPFQKQIRAQAELAIDEADVIIFL 89


>gi|307103139|gb|EFN51402.1| hypothetical protein CHLNCDRAFT_37436 [Chlorella variabilis]
          Length = 540

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 42/87 (48%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+LFN +  + VAIV D PG TRD L        +   + DT G+   
Sbjct: 103 KVAIVGRPNVGKSALFNRIVGRQVAIVYDYPGVTRDRLYTRAFWGDHEFLLVDTGGLMSD 162

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + + KE   R FL   N      L +
Sbjct: 163 AEKLPKEQQARPFLPAANPACRAFLPQ 189



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           ++ I+G  N GKSSL NAL  ++ +IV+ + GTTRD +  DL L +G   K+ DTAG+R+
Sbjct: 275 EVAIIGRPNVGKSSLLNALVGEERSIVSSMAGTTRDAIDTDLVLTDGSKFKLVDTAGVRK 334

Query: 280 TDDIV 284
              I 
Sbjct: 335 RTAIA 339


>gi|328544034|ref|YP_004304143.1| GTP-binding protein engA [polymorphum gilvum SL003B-26A1]
 gi|326413778|gb|ADZ70841.1| GTP-binding protein engA [Polymorphum gilvum SL003B-26A1]
          Length = 472

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 6/114 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L      + DTAG+ 
Sbjct: 2   GATVAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGEARLGDLRFTVIDTAGL- 60

Query: 279 ETDDIVEKEGIKRTFLE--VENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
           E  D    EG  R   E  +  AD++L +  I+++  ++ P +  F  +  +SD
Sbjct: 61  EDADATSLEGRMRAQTEEAIAEADVVLFV--IDARSGVT-PLDSHFAEVARRSD 111



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N +  ++  +     G TRD +++D     + VK+ DTAGIR  
Sbjct: 203 RVAIVGRPNAGKSTLINRMIGEERMLTGPEAGITRDSISVDWLWRDHHVKLFDTAGIRRK 262

Query: 281 DDIVEK 286
             + EK
Sbjct: 263 ARVQEK 268


>gi|297591047|ref|ZP_06949685.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus MN8]
 gi|297575933|gb|EFH94649.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus MN8]
          Length = 436

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD +  +   +G    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 21/158 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN----------------SKKEISFPKN-IDFIF 324
              + +   +  + ++ AD+I+ +  +                 SKK +    N +D + 
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNME 125

Query: 325 IGTKSDLYSTYTEEY--DHLISSFTGEGLEELINKIKS 360
           +  ++D+Y  Y+  +   + IS   G GL +L++ + S
Sbjct: 126 M--RTDVYDFYSLGFGEPYPISGAHGLGLGDLLDAVVS 161


>gi|168703924|ref|ZP_02736201.1| probable GTP-binding protein [Gemmata obscuriglobus UQM 2246]
          Length = 495

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+  N+LA  +  IV++IPGTTRD + + ++ +G      DTAG+R+T 
Sbjct: 180 LAIVGRRNAGKSTFINSLAGGERVIVSEIPGTTRDSVDVRIERDGKSYVAIDTAGVRKTA 239

Query: 282 DI---VEKEGIKRTFLEVENADLIL 303
            +   +E     R    V  AD+++
Sbjct: 240 KMGTNIEFYSNHRAQRSVRRADVVM 264



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G  N GKSSLFN LA + ++IV    G TRD ++  ++  G +  + DT GI
Sbjct: 6   VAIVGRPNVGKSSLFNWLAGRRISIVDPTAGVTRDRVSTVVEHGGRVWDLMDTGGI 61


>gi|147785731|emb|CAN73088.1| hypothetical protein VITISV_030762 [Vitis vinifera]
          Length = 344

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRE- 279
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +    +G   ++ DTAGIR  
Sbjct: 54  IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTGPDGQKYRLIDTAGIRRR 113

Query: 280 -----TDDIVEKEGIKRTFLEVENADLILLLKE 307
                +    E   + R F  +  +D++ L+ E
Sbjct: 114 AAVASSGSTTEALSVNRAFRAIRRSDVVALVIE 146


>gi|150021499|ref|YP_001306853.1| GTP-binding protein EngA [Thermosipho melanesiensis BI429]
 gi|166225930|sp|A6LNG7|DER_THEM4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|149794020|gb|ABR31468.1| small GTP-binding protein [Thermosipho melanesiensis BI429]
          Length = 437

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 6/90 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+LFN + +++ A+VT IPGTTRD +   +++ G      DTAG+R  
Sbjct: 181 RVALIGRPNAGKSTLFNGILERERALVTPIPGTTRDAIDELVEINGKKYLFIDTAGLRRK 240

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305
              VE + I      R+   +E +D+++ +
Sbjct: 241 SK-VEYKSIDMYSNVRSIKSIELSDVVVFV 269



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           ++I+G SN GKS+LFN L  K  +IV +  G TRD ++  +   G   K+ DT GI E  
Sbjct: 4   VLIVGKSNVGKSTLFNKLIGKKKSIVDNKEGVTRDAVSDRVSYFGKSFKLIDTCGIFERP 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+ +     T   +   D+I+ +
Sbjct: 64  EDIISERLKNLTLNMLSEGDIIIFV 88


>gi|254473321|ref|ZP_05086718.1| GTP-binding protein EngA [Pseudovibrio sp. JE062]
 gi|211957437|gb|EEA92640.1| GTP-binding protein EngA [Pseudovibrio sp. JE062]
          Length = 468

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 76/163 (46%), Gaps = 26/163 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD  + D  L     +I DTAG+ E  
Sbjct: 5   VAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRSGDARLGDLRFRIVDTAGLEEA- 63

Query: 282 DIVEKEGIKRTFLE--VENADLILLLKEINSKKEISFPKNIDF-----------IFIGTK 328
           +    EG  R   E  +  AD  L L  I+++  +  P +  F           I    K
Sbjct: 64  EASSLEGRMRAQTEEAIREADACLFL--IDARAGL-MPLDEHFANLLRRNSTPVILCANK 120

Query: 329 SD-------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSIL 362
           ++       LY  +T  +   I  S+  GEGL EL + ++ I+
Sbjct: 121 AEGKAGDVGLYDAFTLGFGDPIALSAEHGEGLSELYDMLRPIV 163



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 41/66 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N +  ++  +     G TRD ++++ + + + VK+ DTAGIR+ 
Sbjct: 201 RMAIVGRPNAGKSTLINQMLGEERLLTGPEAGITRDSISVEWEWQDHHVKVFDTAGIRKK 260

Query: 281 DDIVEK 286
             + EK
Sbjct: 261 ARVQEK 266


>gi|146319380|ref|YP_001199092.1| GTP-binding protein EngA [Streptococcus suis 05ZYH33]
 gi|146321585|ref|YP_001201296.1| GTP-binding protein EngA [Streptococcus suis 98HAH33]
 gi|253752406|ref|YP_003025547.1| GTP-binding protein EngA [Streptococcus suis SC84]
 gi|253754232|ref|YP_003027373.1| GTP-binding protein EngA [Streptococcus suis P1/7]
 gi|253756166|ref|YP_003029306.1| GTP-binding protein EngA [Streptococcus suis BM407]
 gi|166225866|sp|A4W3F7|DER_STRS2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225868|sp|A4VX53|DER_STRSY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145690186|gb|ABP90692.1| Predicted GTPase [Streptococcus suis 05ZYH33]
 gi|145692391|gb|ABP92896.1| Predicted GTPase [Streptococcus suis 98HAH33]
 gi|251816695|emb|CAZ52336.1| GTP-binding protein EngA [Streptococcus suis SC84]
 gi|251818630|emb|CAZ56464.1| GTP-binding protein EngA [Streptococcus suis BM407]
 gi|251820478|emb|CAR47214.1| GTP-binding protein EngA [Streptococcus suis P1/7]
 gi|319758811|gb|ADV70753.1| GTP-binding protein EngA [Streptococcus suis JS14]
          Length = 436

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 33/179 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + + GTTRD +     D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFTDPEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    +E +D+IL++  IN+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIERSDVILMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
            EYD  I+ F  E  + +I     I+ NK+  L     + K+    +    +YL  A +
Sbjct: 272 REYDKRIAGFAHEAGKGMI-----IVVNKWDTLEKDNHTMKQWEDDIRDQFQYLSYAPI 325



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|322379379|ref|ZP_08053750.1| GTP-binding protein EngA [Helicobacter suis HS1]
 gi|321148197|gb|EFX42726.1| GTP-binding protein EngA [Helicobacter suis HS1]
          Length = 448

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ILG  N GKSSLFN L +   AI  DI GTTRD+      L G+ V++ DT G  + 
Sbjct: 13  KIAILGKPNVGKSSLFNCLLRSRSAITFDIAGTTRDIKKQTFLLAGHGVELWDTGGF-DA 71

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D I  ++        ++ +DLIL
Sbjct: 72  DSIFGEQIQSFNLEAIKASDLIL 94



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL +++ A+V++IPGTT D +   +      +   DTAG+R+ 
Sbjct: 188 QVGIIGRVNVGKSSLLNALIEQERALVSEIPGTTIDPVDQSISHHNQEICFVDTAGLRQR 247

Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305
             +  +EK  + RT   +E + + LL+
Sbjct: 248 SKVEGLEKFALDRTRKVLEKSHIALLV 274


>gi|303232256|ref|ZP_07318955.1| ribosome-associated GTPase EngA [Atopobium vaginae PB189-T1-4]
 gi|302481666|gb|EFL44727.1| ribosome-associated GTPase EngA [Atopobium vaginae PB189-T1-4]
          Length = 439

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL N L+K + ++V +I GTTRD + I  +     +++ DTAG+R+  
Sbjct: 182 IAVIGRPNVGKSSLVNKLSKTNRSLVANIAGTTRDAIDICFEYHDTPIRLVDTAGMRKKS 241

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   VE   + R    ++ AD+ L++
Sbjct: 242 QVHEDVEYYSLVRGLQAMDKADVALMV 268



 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           + I+G  N GKS+L N LA    AIV +  G TRD    D D  G    + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLVNRLATTKTAIVHESRGVTRDRSYHDCDWRGVDFTLIDTGGIESQK 65

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
           + D+      ++  L  E AD+I+
Sbjct: 66  STDVFALGIREQALLACEEADVIV 89


>gi|33519978|ref|NP_878810.1| GTP-binding protein EngA [Candidatus Blochmannia floridanus]
 gi|33504324|emb|CAD83216.1| predicted GTPase [Candidatus Blochmannia floridanus]
          Length = 485

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 36/173 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-- 279
           +VI+G  N+GKS+  N L K++  IV+DIPGTTRD + I +          DTAGIR+  
Sbjct: 213 VVIIGRPNSGKSTFVNYLLKEERMIVSDIPGTTRDSVYIPITYNNDKYMFVDTAGIRKKK 272

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDFIFIGTKS------ 329
               + E+    +T   ++ A + L + +I      +++S    ++FI   +KS      
Sbjct: 273 HVSSVAEQISKLKTLQILKYAHVTLFILDIQEGIVNQDLSL---LNFITKSSKSLIIAVN 329

Query: 330 --DLYSTYT--------EEYD-----------HLISSFTGEGLEELINKIKSI 361
             D++S+ T        EE +           H IS+  G G++ L   IK I
Sbjct: 330 KYDIFSSKTGFDKTLMKEELNKKISFLNFVKIHYISALYGSGIKNLFQSIKKI 382



 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IV++G  N GKS+LFN L     A+V+  PG TRD     +  + +   + DT G     
Sbjct: 12  IVLVGQENVGKSTLFNRLTCTRDALVSSYPGLTRDRKYGYIKYKNFKFILIDTGGFNIFS 71

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSKKE 313
           D + ++ I  +T + ++ + +IL +  ++ KK+
Sbjct: 72  DTLIQDCINDQTNIAIQESCIILFV--VDGKKQ 102


>gi|227903851|ref|ZP_04021656.1| GTP-binding protein EngA [Lactobacillus acidophilus ATCC 4796]
 gi|227868738|gb|EEJ76159.1| GTP-binding protein EngA [Lactobacillus acidophilus ATCC 4796]
          Length = 435

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL N L  +D  IV +  GTTRD +      +G   K+ DTAGIR    +
Sbjct: 179 MIGRPNVGKSSLVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGIKFKVVDTAGIRRRGKV 238

Query: 284 VEKE---GIKRTFLEVENADLILLL 305
            EK     + R    +E +D++LL+
Sbjct: 239 YEKTEKYSVLRAMSAIERSDVVLLV 263



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 47/87 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD      +  G+   + DT GI    
Sbjct: 6   VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
             +E E   +  + +E AD+I++L  +
Sbjct: 66  GKIEDEIRAQAEIAIEEADVIVMLTNV 92


>gi|134301774|ref|YP_001121742.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|166198717|sp|A4IXH0|DER_FRATW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|134049551|gb|ABO46622.1| GTP-binding protein [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 465

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G    I DTAG
Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +R+   +   +EK  + +T   ++++++++ +  +++++ IS
Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280



 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276
           + I+G +N GKS+LFN L     A+V D  G TRD         DLD   YLV   DT G
Sbjct: 5   VAIVGRANVGKSTLFNVLTNSHDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + D   ++   K++ + ++ A+L+  +
Sbjct: 60  ISDKDVGFDEFMAKQSQIAIDEANLVFFV 88


>gi|16125900|ref|NP_420464.1| GTP-binding protein EngA [Caulobacter crescentus CB15]
 gi|221234663|ref|YP_002517099.1| GTP-binding protein EngA [Caulobacter crescentus NA1000]
 gi|13423060|gb|AAK23632.1| GTP-binding protein [Caulobacter crescentus CB15]
 gi|220963835|gb|ACL95191.1| GTP-binding protein [Caulobacter crescentus NA1000]
          Length = 588

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+LFN LA K +AIV D PG TRD       L    +++ DTAG  + 
Sbjct: 4   KLAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYASGSLGDLELELIDTAGFEDV 63

Query: 281 DD-IVEKEGIKRTFLEVENADLILLL 305
           DD  +E     +T   +E AD+ L +
Sbjct: 64  DDSSLEARMRAQTEAAIEEADVSLFV 89



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I I+G  NAGKS+L N L  +D  +     G TRD +++D + +G  +++ DTAG+R  
Sbjct: 180 RIAIIGRPNAGKSTLVNRLLGEDRLLTGPEAGITRDSISVDWEWDGRKIRLVDTAGLRRK 239

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
            +  D +EK     T   +  A+++LL+ +     EI
Sbjct: 240 AKVQDKLEKLSTADTIRAITFAEVVLLVMDATHPFEI 276


>gi|300114862|ref|YP_003761437.1| ribosome-associated GTPase EngA [Nitrosococcus watsonii C-113]
 gi|299540799|gb|ADJ29116.1| ribosome-associated GTPase EngA [Nitrosococcus watsonii C-113]
          Length = 464

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 3/95 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI   G ++ ++G  N GKS+L N +  ++  + ++IPGTTRD ++I     G    + D
Sbjct: 171 EIQAKGLQLAVIGRPNVGKSTLVNRILGEERVLSSEIPGTTRDSISIPFRHHGRDYTLVD 230

Query: 274 TAGIRETD---DIVEKEGIKRTFLEVENADLILLL 305
           TAGIR      D VEK  + ++   +  A +++L+
Sbjct: 231 TAGIRRRSRILDRVEKFSVIQSLQSIAIAQVVILV 265



 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISDTAGIR 278
           + ++G  N GKS+LFN L +   A+V D PG TRD    L    +   ++V   DT GI 
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADQPGVTRDRQYGLAYCGEQSFFVV---DTGGIM 61

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           E +  +      +  L +E AD+I  L
Sbjct: 62  EQESEIGSLMRGQAQLAIEEADVIFFL 88


>gi|254373886|ref|ZP_04989368.1| hypothetical protein FTDG_00040 [Francisella novicida GA99-3548]
 gi|151571606|gb|EDN37260.1| hypothetical protein FTDG_00040 [Francisella novicida GA99-3548]
          Length = 465

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G    I DTAG
Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +R+   +   +EK  + +T   ++++++++ +  +++++ IS
Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280



 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276
           + I+G +N GKS+LFN L     A+V D  G TRD         DLD   YLV   DT G
Sbjct: 5   VAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + D   ++   K++ + ++ A+L+  +
Sbjct: 60  ISDKDVGFDEFMAKQSQIAIDEANLVFFV 88


>gi|91205027|ref|YP_537382.1| GTP-binding protein EngA [Rickettsia bellii RML369-C]
 gi|122426010|sp|Q1RK21|DER_RICBR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|91068571|gb|ABE04293.1| GTP-binding protein [Rickettsia bellii RML369-C]
          Length = 452

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  D 
Sbjct: 13  LVGRPNVGKSTLFNRLSMRKKAIVHDLPGVTRDRKYTDGRIGSFEFSLIDTPGLEENPDS 72

Query: 284 VEKEGIKRTFLEVENADLILLL 305
             K  +++T   +  ADLI  +
Sbjct: 73  FGKRLMEQTTKAINEADLICFM 94



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +G  +K+ DTAG+R+ 
Sbjct: 186 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKGNHIKLIDTAGLRKK 245

Query: 281 DDIVE 285
             I E
Sbjct: 246 ATITE 250


>gi|154246486|ref|YP_001417444.1| GTP-binding protein EngA [Xanthobacter autotrophicus Py2]
 gi|238686724|sp|A7IIE4|DER_XANP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|154160571|gb|ABS67787.1| small GTP-binding protein [Xanthobacter autotrophicus Py2]
          Length = 458

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L     +I DTAG+ E
Sbjct: 3   FSLAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDARLGDLSFRIVDTAGLEE 62

Query: 280 TDDIVEKEGIKRTFLE--VENADLILLL 305
             D    EG  R   E  + +AD IL +
Sbjct: 63  A-DAASLEGRMRAQTEAAIGHADAILFM 89



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 28/172 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   K+ +LG  NAGKS+L N L  +D  +     G TRD +++++   G  +++ DTAG
Sbjct: 191 RRPIKVTVLGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSISVEVTYAGAKLEVFDTAG 250

Query: 277 IRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI-------FIG 326
           +R+    +D +EK         ++ A++++LL +     E    +  D +        IG
Sbjct: 251 LRKRARIEDKLEKLSAADALRAMKFAEVVVLLVDATHPFEEQDLRIADLVAREGRALVIG 310

Query: 327 -TKSDLY------STYTEEYDHL-----------ISSFTGEGLEELINKIKS 360
             KSDL       +   E+ D L           +S   G GL++L+  I S
Sbjct: 311 YNKSDLVARGGLITRLREDVDRLLPQVKGVPIVPVSGLMGHGLDKLVAAISS 362


>gi|292559009|gb|ADE32010.1| Small GTP-binding domain containing protein [Streptococcus suis
           GZ1]
          Length = 436

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 33/179 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + + GTTRD +     D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFTDPEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    +E +D+IL++  IN+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIERSDVILMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
            EYD  I+ F  E  + +I     I+ NK+  L     + K+    +    +YL  A +
Sbjct: 272 REYDKRIAGFAHEAGKGMI-----IVVNKWDTLEKDNHTMKQWEDDIRDQFQYLSYAPI 325



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|89255825|ref|YP_513187.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314316|ref|YP_763039.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156501805|ref|YP_001427870.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009589|ref|ZP_02274520.1| GTP-binding protein [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367186|ref|ZP_04983217.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257]
 gi|254367192|ref|ZP_04983222.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257]
 gi|254368682|ref|ZP_04984696.1| hypothetical protein FTAG_01704 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953028|ref|ZP_06557649.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313760|ref|ZP_06804335.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica
           URFT1]
 gi|122325651|sp|Q0BND2|DER_FRATO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|122501151|sp|Q2A515|DER_FRATH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166198715|sp|A7NAB1|DER_FRATF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|89143656|emb|CAJ78854.1| GTP-binding protein [Francisella tularensis subsp. holarctica LVS]
 gi|115129215|gb|ABI82402.1| GTP-binding protein [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253007|gb|EBA52101.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257]
 gi|134253012|gb|EBA52106.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257]
 gi|156252408|gb|ABU60914.1| GTP-binding protein [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121597|gb|EDO65774.1| hypothetical protein FTAG_01704 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 465

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G    I DTAG
Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +R+   +   +EK  + +T   ++++++++ +  +++++ IS
Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280



 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276
           + I+G +N GKS+LFN L     A+V D  G TRD         DLD   YLV   DT G
Sbjct: 5   VAIVGRANVGKSTLFNVLTNSHDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + D   ++   K++ + ++ A+L+  +
Sbjct: 60  ISDKDVGFDEFMAKQSQIAIDEANLVFFV 88


>gi|297170725|gb|ADI21748.1| predicted GTPases [uncultured actinobacterium HF0130_15N16]
          Length = 442

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + I+G  N GKS+LFN L   + ++V D+PGTTRD +   ++ E   ++  DTAG+R   
Sbjct: 192 VAIVGRPNVGKSTLFNRLIGDERSVVHDMPGTTRDAIDTVVETELGPLRFIDTAGMRRKA 251

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
             DD  E     R    ++ AD+ LL+
Sbjct: 252 RVDDDTEYYSNLRALRAIDKADVALLV 278



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN +  +  AIV + PG TRD   ++ + +GY  ++ DT G   + 
Sbjct: 10  VSVVGRPNVGKSTLFNRILGRREAIVEEKPGVTRDRKVLEAEWQGYRFELVDTGGWMPSG 69

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++ +   ++   + ++DLI+L+
Sbjct: 70  NELDDKVSAQSERAISDSDLIVLV 93


>gi|150376651|ref|YP_001313247.1| GTP-binding protein EngA [Sinorhizobium medicae WSM419]
 gi|150031198|gb|ABR63314.1| small GTP-binding protein [Sinorhizobium medicae WSM419]
          Length = 477

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L     +I DTAG+ +
Sbjct: 3   FTVAIIGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGLEQ 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305
           +  D ++     +T   ++ ADL L +
Sbjct: 63  SSPDSLQGRMWAQTEAAIDEADLSLFV 89



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R  
Sbjct: 207 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 266

Query: 281 DDIVEK 286
             + EK
Sbjct: 267 AKVQEK 272


>gi|300087259|ref|YP_003757781.1| ferrous iron transport protein B [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299526992|gb|ADJ25460.1| ferrous iron transport protein B [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 676

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSLF+ L  + V I+++ PGTT DV      ++G   ++ DT G+   
Sbjct: 33  KIALVGSPNVGKSSLFHRLTGRRV-IISNYPGTTVDVFRGQAVIQGRQAEVVDTPGMYSL 91

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
             I E+E + R  L  E  D+IL
Sbjct: 92  HSITEEERVARAILLKEKPDVIL 114


>gi|262066723|ref|ZP_06026335.1| ribosome-associated GTPase EngA [Fusobacterium periodonticum ATCC
           33693]
 gi|291379522|gb|EFE87040.1| ribosome-associated GTPase EngA [Fusobacterium periodonticum ATCC
           33693]
          Length = 441

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+  +  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGSERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ +L+
Sbjct: 238 SKVEESLEYYSVLRALKSIKRADVCILM 265



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L    +AIV ++PG TRD L  D +  G    I DT G+    
Sbjct: 5   IAIVGRPNVGKSTLFNNLIGDKIAIVDNLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  +       EI++    KN   I    K D  
Sbjct: 65  NDFLMTKIKEQAEVAMNEADVILFVVDGKAGLNPLDDEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D  I  F G G E L+
Sbjct: 123 -NFFEQQDD-IYDFYGLGFEYLV 143


>gi|253581911|ref|ZP_04859135.1| GTP-binding protein [Fusobacterium varium ATCC 27725]
 gi|251836260|gb|EES64797.1| GTP-binding protein [Fusobacterium varium ATCC 27725]
          Length = 441

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  NAGKSSL N L+ ++  IV+DI GTTRD +   +  +     I DTAGIR  
Sbjct: 178 KLAIIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTIVQYKDNKYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ +L+
Sbjct: 238 SKVEESLEYYSVLRAIKTIKRADVCILM 265



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  + +  G    + DT G+   +
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDRIAIVDDMPGVTRDRLYRETEWNGVEFVVVDTGGLEPRN 64

Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305
           +      IK +  + +  AD+IL +
Sbjct: 65  NEFMMTKIKEQAEVAMNEADVILFV 89


>gi|118497053|ref|YP_898103.1| GTP-binding protein EngA [Francisella tularensis subsp. novicida
           U112]
 gi|194324288|ref|ZP_03058062.1| GTPase of unknown function family protein, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|166198716|sp|A0Q534|DER_FRATN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|118422959|gb|ABK89349.1| GTP-binding protein [Francisella novicida U112]
 gi|194321735|gb|EDX19219.1| GTPase of unknown function family protein, putative [Francisella
           tularensis subsp. novicida FTE]
          Length = 465

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G    I DTAG
Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +R+   +   +EK  + +T   ++++++++ +  +++++ IS
Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280



 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276
           + I+G +N GKS+LFN L     A+V D  G TRD         DLD   YLV   DT G
Sbjct: 5   VAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + D   ++   K++ + ++ A+L+  +
Sbjct: 60  ISDKDVGFDEFMAKQSQIAIDEANLVFFV 88


>gi|294086068|ref|YP_003552828.1| Small GTP-binding protein domain-containing protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665643|gb|ADE40744.1| Small GTP-binding protein domain protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 478

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TD 281
            I+G  N GKS+LFN L  +  AIV D PG TRD    D  L G   +I DTAG+ E +D
Sbjct: 5   AIVGRPNVGKSTLFNRLIGRQHAIVDDQPGVTRDRREGDGRLAGLRFRIIDTAGLEEASD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +E     +T L +  AD+ LL+
Sbjct: 65  GSLEDRMRYQTELAIVGADVTLLV 88



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKS+L N+L  +D  +V    G TRD + +  + +G   K+ DTAG+R  
Sbjct: 215 RIAIVGRPNMGKSTLINSLLDEDRLLVGPEAGITRDAIELPFEWQGRPYKLVDTAGMRRR 274

Query: 281 DDIVEK 286
             +V+K
Sbjct: 275 ARVVDK 280


>gi|237739602|ref|ZP_04570083.1| GTP-binding protein engA [Fusobacterium sp. 2_1_31]
 gi|229423210|gb|EEO38257.1| GTP-binding protein engA [Fusobacterium sp. 2_1_31]
          Length = 441

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+  +  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGSERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ +L+
Sbjct: 238 SKVEESLEYYSVLRALKSIKRADVCILM 265



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   IAIVGRPNVGKSTLFNNLIGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  +       EI++    KN   I    K D  
Sbjct: 65  NDFLMTKIKEQAEVAMNEADVILFVVDGKAGLNPLDDEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             Y E+ D  I  F G G E L+
Sbjct: 123 -NYFEQQDD-IYDFYGLGFEYLV 143


>gi|329571714|gb|EGG53395.1| ribosome biogenesis GTPase Der [Enterococcus faecalis TX1467]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  IV+DI GTTRD +    +  EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    +E +D++L++
Sbjct: 236 RGKVYESTEKYSVMRAMRAIERSDIVLMV 264



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    I DT G    D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGFDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + ++ AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIIFV 89


>gi|330723544|gb|AEC45914.1| GTP-binding protein Der [Mycoplasma hyorhinis MCLD]
          Length = 433

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            +++ I+G  NAGKS+L N LA ++ +IV+ I GTTRD ++  + ++    +I DTAGI 
Sbjct: 170 AFRLAIIGKPNAGKSTLLNKLANENRSIVSPIAGTTRDSVSSFIKIDKIDFEIIDTAGII 229

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               I   V+   + R F  +++A L L+L  I++ +E+S
Sbjct: 230 RKSKIAQSVDFYALLRAFNSLDDAQLSLIL--IDATQELS 267



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 19/152 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L  K V+I+ D PG TRD +   ++  G    + DT GI   +
Sbjct: 5   VALIGKPNVGKSTLFNKLVGKKVSIIHDSPGVTRDRIYSKVEWAGKEFYLIDTGGIEIEN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN--IDFIFIGTKSDLY------- 332
              +++   +T + +E A+LI+ L  ++ + EI    +  ID +   +K  L        
Sbjct: 65  KSFQEQIRIQTQIAIEEANLIIFL--VDGRVEIDSDDHFVIDLLRKSSKKVLIAANKLEG 122

Query: 333 ------STYTEEYDHL--ISSFTGEGLEELIN 356
                 S Y+  ++H+  IS+  GEG+ +L++
Sbjct: 123 NKFFDTSIYSLGFEHIFPISAIHGEGVGDLLD 154


>gi|328676517|gb|AEB27387.1| GTP-binding protein EngA [Francisella cf. novicida Fx1]
          Length = 465

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G    I DTAG
Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +R+   +   +EK  + +T   ++++++++ +  +++++ IS
Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280



 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276
           + I+G +N GKS+LFN L     A+V D  G TRD         DLD   YLV   DT G
Sbjct: 5   VAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + D   ++   K++ + ++ A+L+  +
Sbjct: 60  ISDKDAGFDEFMAKQSQIAIDEANLVFFV 88


>gi|294783341|ref|ZP_06748665.1| ribosome-associated GTPase EngA [Fusobacterium sp. 1_1_41FAA]
 gi|294480219|gb|EFG27996.1| ribosome-associated GTPase EngA [Fusobacterium sp. 1_1_41FAA]
          Length = 441

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N L+  +  IV+DI GTTRD +   ++ +     I DTAGIR  
Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGSERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ +L+
Sbjct: 238 SKVEESLEYYSVLRALKSIKRADVCILM 265



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   IAIVGRPNVGKSTLFNNLIGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  +       EI++    KN   I    K D  
Sbjct: 65  NDFLMTKIKEQAEVAMNEADVILFVVDGKAGLNPLDDEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             Y E+ D  I  F G G E L+
Sbjct: 123 -NYFEQQDD-IYDFYGLGFEYLV 143


>gi|208780512|ref|ZP_03247852.1| GTPase of unknown function family protein, putative [Francisella
           novicida FTG]
 gi|254372413|ref|ZP_04987903.1| hypothetical protein FTCG_01637 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570141|gb|EDN35795.1| hypothetical protein FTCG_01637 [Francisella novicida GA99-3549]
 gi|208743658|gb|EDZ89962.1| GTPase of unknown function family protein, putative [Francisella
           novicida FTG]
          Length = 465

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G    I DTAG
Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +R+   +   +EK  + +T   ++++++++ +  +++++ IS
Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280



 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276
           + I+G +N GKS+LFN L     A+V D  G TRD         DLD   YLV   DT G
Sbjct: 5   VAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + D   ++   K++ + ++ A+L+  +
Sbjct: 60  ISDKDVGFDEFMAKQSQIAIDEANLVFFV 88


>gi|20807296|ref|NP_622467.1| GTPase [Thermoanaerobacter tengcongensis MB4]
 gi|20515806|gb|AAM24071.1| predicted GTPases [Thermoanaerobacter tengcongensis MB4]
          Length = 409

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 29/160 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I G  NAGKSSL NA+  + +AIV+  PGTT D +   ++ L    V + DTAGI   
Sbjct: 18  IAIFGKRNAGKSSLINAITNQPIAIVSPTPGTTTDPVYKSMEILPLGPVVLVDTAGI--- 74

Query: 281 DDIVE--KEGIKRTFLEVENADL-ILLLKEINSKKEISFPKNIDFIF-------IGT--K 328
           DD+ E  K  +++T   +   D+ IL++ EI+   +++F K +  +F       IG   K
Sbjct: 75  DDVGELGKLRVEKTLEVLNRTDIAILVVSEID---DLNFEKQLIKLFREKKVPSIGVLNK 131

Query: 329 SDLYSTYTEEYDHL----------ISSFTGEGLEELINKI 358
            DL   Y E+  +L          +S  T +G+EEL N+I
Sbjct: 132 IDLDKDYKEKLSYLQSTLGIKFLPVSCATLKGIEELKNEI 171


>gi|56708364|ref|YP_170260.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670834|ref|YP_667391.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457492|ref|ZP_03665965.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370986|ref|ZP_04986989.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875187|ref|ZP_05247897.1| GTP-binding protein engA [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|81820765|sp|Q5NFD2|DER_FRATT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123169321|sp|Q14GT5|DER_FRAT1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|56604856|emb|CAG45939.1| GTP-binding protein [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110321167|emb|CAL09322.1| GTP-binding protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151569227|gb|EDN34881.1| hypothetical protein FTBG_01608 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841186|gb|EET19622.1| GTP-binding protein engA [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159981|gb|ADA79372.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 465

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G    I DTAG
Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +R+   +   +EK  + +T   ++++++++ +  +++++ IS
Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280



 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276
           + I+G +N GKS+LFN L     A+V D  G TRD         DLD   YLV   DT G
Sbjct: 5   VAIVGRANVGKSTLFNVLTNSYDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + D   ++   K++ + ++ A+L+  +
Sbjct: 60  ISDKDVGFDEFMAKQSQIAIDEANLVFFV 88


>gi|29376112|ref|NP_815266.1| GTP-binding protein EngA [Enterococcus faecalis V583]
 gi|227518740|ref|ZP_03948789.1| GTP-binding protein EngA [Enterococcus faecalis TX0104]
 gi|227553350|ref|ZP_03983399.1| GTP-binding protein EngA [Enterococcus faecalis HH22]
 gi|257419285|ref|ZP_05596279.1| GTP-binding protein engA [Enterococcus faecalis T11]
 gi|37999534|sp|Q834T4|DER_ENTFA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|29343574|gb|AAO81336.1| GTPase, putative [Enterococcus faecalis V583]
 gi|227073821|gb|EEI11784.1| GTP-binding protein EngA [Enterococcus faecalis TX0104]
 gi|227177519|gb|EEI58491.1| GTP-binding protein EngA [Enterococcus faecalis HH22]
 gi|257161113|gb|EEU91073.1| GTP-binding protein engA [Enterococcus faecalis T11]
 gi|315575878|gb|EFU88069.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0309B]
 gi|315580530|gb|EFU92721.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0309A]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  IV+DI GTTRD +    +  EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    +E +D++L++
Sbjct: 236 RGKVYESTEKYSVMRAMRAIERSDIVLMV 264



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A   ++IV D PG TRD +    +  G    I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGVRISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + ++ AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIIFV 89


>gi|189461432|ref|ZP_03010217.1| hypothetical protein BACCOP_02087 [Bacteroides coprocola DSM 17136]
 gi|189431961|gb|EDV00946.1| hypothetical protein BACCOP_02087 [Bacteroides coprocola DSM 17136]
          Length = 394

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 18/154 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276
           N   I + G  N+GKSSL NAL  ++VA+V+DI GTT D +   +++ G    +  DTAG
Sbjct: 8   NRLHIGLFGKRNSGKSSLINALTNQEVALVSDIAGTTTDPVYKAMEIHGIGPCVFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFP-----KNIDFIFIGTKSD 330
           + + D  +    I++T   ++  D+ LL+   +  +KE+ +      KNI  ++I  K+D
Sbjct: 68  L-DDDGELGALRIQQTMRAMDRTDIALLVCTGDDIEKELEWSRLLKEKNIPVVWILNKAD 126

Query: 331 LYSTYTEEYDHL----------ISSFTGEGLEEL 354
           L +  T     +          +S+ T +G+E++
Sbjct: 127 LLTDVTSTIRSIEKKCGQVPLGVSACTKQGMEDI 160


>gi|307292007|ref|ZP_07571876.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0411]
 gi|306497005|gb|EFM66553.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0411]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  IV+DI GTTRD +    +  EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    +E +D++L++
Sbjct: 236 RGKVYESTEKYSVMRAMRAIERSDIVLMV 264



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + ++ AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIIFV 89


>gi|227884874|ref|ZP_04002679.1| GTPase [Escherichia coli 83972]
 gi|227838166|gb|EEJ48632.1| GTPase [Escherichia coli 83972]
          Length = 242

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   GY + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGYSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|225435462|ref|XP_002282837.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 677

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRE- 279
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +    +G   ++ DTAGIR  
Sbjct: 384 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTGPDGQKYRLIDTAGIRRR 443

Query: 280 -----TDDIVEKEGIKRTFLEVENADLILLLKE 307
                +    E   + R F  +  +D++ L+ E
Sbjct: 444 AAVASSGSTTEALSVNRAFRAIRRSDVVALVIE 476



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           ++ I+G  N GKS+LFN L   + AIV D PG TRD L        Y   + DT G+   
Sbjct: 175 RVTIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRAFWGDYEFMVIDTGGVLTI 234

Query: 278 -RETDDIVEKEGIKRTF 293
            +  D+++E+  I +T 
Sbjct: 235 SKSQDNVMEELAITKTI 251


>gi|51245541|ref|YP_065425.1| GTP-binding protein Era-like protein [Desulfotalea psychrophila
           LSv54]
 gi|50876578|emb|CAG36418.1| probable GTP-binding protein Era homolog [Desulfotalea psychrophila
           LSv54]
          Length = 313

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 97/203 (47%), Gaps = 27/203 (13%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           LG+ +++G  + I+G  NAGKS+L N L  + ++IVT  P TTR+ +   ++ + Y + +
Sbjct: 13  LGKDVKSGM-VAIVGPPNAGKSTLMNQLLGQKISIVTSKPQTTRNRILGIVNDDAYQIVL 71

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEIS-FPKNI 320
            DT G+ + D+ +  E ++     +   D +L L +++           ++E++ + + I
Sbjct: 72  LDTPGLHKADEPLNIEMMRVALESLSEVDAVLFLVDVSLPLPPKALAKQREELAGYMEKI 131

Query: 321 D--FIFIGTKSDLYS-----TYTEEYDHL--------ISSFTGEGLEELINKIKSILSNK 365
           +   I +  K DL          E Y  L        IS+  G+G + L+ +I  ++   
Sbjct: 132 ESPAILVLNKVDLIDKQKLLPMIESYAKLFPFKAVVPISALNGDGADNLLKEILELIPVG 191

Query: 366 FKKLPFSIPSHKRHLYHLSQTVR 388
            +  P  IP+     +  ++ VR
Sbjct: 192 PRYFPEDIPTDATERFLAAEIVR 214


>gi|304372871|ref|YP_003856080.1| Predicted GTPase protein [Mycoplasma hyorhinis HUB-1]
 gi|304309062|gb|ADM21542.1| Predicted GTPase protein [Mycoplasma hyorhinis HUB-1]
          Length = 433

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            +++ I+G  NAGKS+L N LA ++ +IV+ I GTTRD ++  + ++    +I DTAGI 
Sbjct: 170 AFRLAIIGKPNAGKSTLLNKLANENRSIVSPIAGTTRDSVSSFIKIDKIDFEIIDTAGII 229

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               I   V+   + R F  +++A L L+L  I++ +E+S
Sbjct: 230 RKSKIAQSVDFYALLRAFNSLDDAQLSLIL--IDATQELS 267



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 19/152 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L  K V+I+ D PG TRD +   ++  G    + DT GI   +
Sbjct: 5   VALIGKPNVGKSTLFNKLVGKKVSIIHDSPGVTRDRIYSKVEWAGKEFYLIDTGGIEIEN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN--IDFIFIGTKSDLY------- 332
              +++   +T + +E A+LI+ L  ++ + EI    +  ID +   +K  L        
Sbjct: 65  KSFQEQIRIQTQIAIEEANLIIFL--VDGRVEIDSDDHFVIDLLRKSSKKVLIAANKLEG 122

Query: 333 ------STYTEEYDHL--ISSFTGEGLEELIN 356
                 S Y+  ++H+  IS+  GEG+ +L++
Sbjct: 123 NKFFDTSIYSLGFEHIFPISAIHGEGVGDLLD 154


>gi|58337266|ref|YP_193851.1| GTP-binding protein EngA [Lactobacillus acidophilus NCFM]
 gi|81311473|sp|Q5FKF4|DER_LACAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|58254583|gb|AAV42820.1| phosphoglycerate dehydrogenase [Lactobacillus acidophilus NCFM]
          Length = 435

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL N L  +D  IV +  GTTRD +      +G   K+ DTAGIR    +
Sbjct: 179 MIGRPNVGKSSLVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGIKFKVVDTAGIRRRGKV 238

Query: 284 VEKE---GIKRTFLEVENADLILLL 305
            EK     + R    +E +D++LL+
Sbjct: 239 YEKTEKYSVLRAMSAIERSDVVLLV 263



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 47/87 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD      +  G+   + DT GI    
Sbjct: 6   VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
             +E E   +  + +E AD+I++L  +
Sbjct: 66  GKIEDEIRAQAEIAIEEADVIVMLTNV 92


>gi|297746328|emb|CBI16384.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRE- 279
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +    +G   ++ DTAGIR  
Sbjct: 365 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTGPDGQKYRLIDTAGIRRR 424

Query: 280 -----TDDIVEKEGIKRTFLEVENADLILLLKE 307
                +    E   + R F  +  +D++ L+ E
Sbjct: 425 AAVASSGSTTEALSVNRAFRAIRRSDVVALVIE 457



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKS+LFN L   + AIV D PG TRD L        Y   + DT G+   
Sbjct: 189 RVTIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRAFWGDYEFMVIDTGGVLT- 247

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
             I + +  K+    +E + +I+ L
Sbjct: 248 --ISKSQDNKQATAAIEESSVIIFL 270


>gi|149173742|ref|ZP_01852371.1| probable GTP-binding protein [Planctomyces maris DSM 8797]
 gi|148847272|gb|EDL61606.1| probable GTP-binding protein [Planctomyces maris DSM 8797]
          Length = 468

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 14/139 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+  NALA+ +  IV+++ GTTRD + I  + +       DT G+R+ 
Sbjct: 185 KIAIVGRRNVGKSTFINALAESERMIVSEVAGTTRDSVDIRFEFDDKSFLAIDTPGVRKR 244

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNID-----FIFIGTKS 329
             +   +E  G+ R    +  A+++L+    +E  SK +      ID      IF+  K 
Sbjct: 245 KSLANDIEFYGLTRAKRSIRRANVVLMFFDSQETVSKVDKQLVAEIDENHKPCIFVINKW 304

Query: 330 DL---YSTYTEEYDHLISS 345
           DL       +E++D  ++S
Sbjct: 305 DLGREKKMTSEKWDEYLTS 323



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSS+FN LA   VAIV    G TRD +T  +  +    ++ DT GI  T
Sbjct: 5   KIAIVGRPNVGKSSIFNWLAGHRVAIVDPTAGVTRDRVTYLVHEKDRYFELVDTGGIGIT 64

Query: 281 DDIVEKEGIKRTF-LEVENADLILLL 305
           D     E I+R   + ++ ADLIL +
Sbjct: 65  DSDDLSEDIERQIQVGIDEADLILFV 90


>gi|119944927|ref|YP_942607.1| GTP-binding protein EngA [Psychromonas ingrahamii 37]
 gi|166225845|sp|A1SU43|DER_PSYIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|119863531|gb|ABM03008.1| small GTP-binding protein [Psychromonas ingrahamii 37]
          Length = 489

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 84/154 (54%), Gaps = 13/154 (8%)

Query: 168 IRSFIEADLD--FSEEEDVQNFSSKEVLNDILFLKNDISSHIS-QGKLGEIIRNGYKIVI 224
           +R  IE  LD  F + E   +FS  E    + F++ D +  +  Q +L  +     K+ +
Sbjct: 151 VRQMIEIALDGFFDDVEQEDDFSDLE--TGLEFVEEDEALLLKEQERLAAL---PIKLAL 205

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETD 281
           +G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R   + +
Sbjct: 206 IGRPNVGKSTLTNRILGEERVLVYDLPGTTRDSIYIPMSRDDREYILIDTAGVRKRKKVN 265

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           + VEK  + +T   +E+ +++LL+  I+++  IS
Sbjct: 266 ETVEKFSVIKTLQAIEDCNVVLLI--IDARDGIS 297



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       ++ +   + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKIDEHEFIVIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           + ++     ++ L ++ AD +L L +  +   I+
Sbjct: 65  EGIDALMAGQSLLAIDEADAVLFLVDARAGMTIA 98


>gi|54113771|gb|AAV29519.1| NT02FT0401 [synthetic construct]
          Length = 465

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G    I DTAG
Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +R+   +   +EK  + +T   ++++++++ +  +++++ IS
Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280



 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276
           + I+G +N GKS+LFN L     A+V D  G TRD         DLD   YLV   DT G
Sbjct: 5   VAIVGRANVGKSTLFNVLTNSYDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + D   ++   K++ + ++ A+L+  +
Sbjct: 60  ISDKDVGFDEFMAKQSQIAIDEANLVFFV 88


>gi|255975864|ref|ZP_05426450.1| GTP-binding protein engA [Enterococcus faecalis T2]
 gi|256961938|ref|ZP_05566109.1| GTP-binding protein engA [Enterococcus faecalis Merz96]
 gi|257082561|ref|ZP_05576922.1| GTP-binding protein engA [Enterococcus faecalis E1Sol]
 gi|293383006|ref|ZP_06628924.1| ribosome-associated GTPase EngA [Enterococcus faecalis R712]
 gi|293389505|ref|ZP_06633962.1| ribosome-associated GTPase EngA [Enterococcus faecalis S613]
 gi|307278085|ref|ZP_07559169.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0860]
 gi|312907523|ref|ZP_07766514.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 512]
 gi|312910141|ref|ZP_07768988.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 516]
 gi|255968736|gb|EET99358.1| GTP-binding protein engA [Enterococcus faecalis T2]
 gi|256952434|gb|EEU69066.1| GTP-binding protein engA [Enterococcus faecalis Merz96]
 gi|256990591|gb|EEU77893.1| GTP-binding protein engA [Enterococcus faecalis E1Sol]
 gi|291079671|gb|EFE17035.1| ribosome-associated GTPase EngA [Enterococcus faecalis R712]
 gi|291081122|gb|EFE18085.1| ribosome-associated GTPase EngA [Enterococcus faecalis S613]
 gi|306505482|gb|EFM74668.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0860]
 gi|310626551|gb|EFQ09834.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 512]
 gi|311289414|gb|EFQ67970.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 516]
 gi|315172323|gb|EFU16340.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1346]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  IV+DI GTTRD +    +  EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    +E +D++L++
Sbjct: 236 RGKVYESTEKYSVMRAMRAIERSDIVLMV 264



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + ++ AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIIFV 89


>gi|332992293|gb|AEF02348.1| GTP-binding protein Der [Alteromonas sp. SN2]
          Length = 481

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD        E     + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTNTRDALVADYPGLTRDRKYGQAKFEQRQFIVVDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++ E  +++ L +E AD++LLL
Sbjct: 65  EGIDAEMAQQSLLAIEEADVVLLL 88



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+   
Sbjct: 195 KLAIVGKPNVGKSTLTNRILGEERVVVFDLPGTTRDSVFIPMERDEREYILIDTAGVRKR 254

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           R+ ++ VEK  I +T   ++ A+++L++  I++++ I+
Sbjct: 255 RKVNEAVEKFSIVKTLQAIDEANVVLMI--IDAREGIT 290


>gi|257089874|ref|ZP_05584235.1| GTP-binding protein engA [Enterococcus faecalis CH188]
 gi|312903296|ref|ZP_07762476.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0635]
 gi|256998686|gb|EEU85206.1| GTP-binding protein engA [Enterococcus faecalis CH188]
 gi|310633172|gb|EFQ16455.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0635]
 gi|315577718|gb|EFU89909.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0630]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  IV+DI GTTRD +    +  EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    +E +D++L++
Sbjct: 236 RGKVYESTEKYSVMRAMRAIERSDIVLMV 264



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + ++ AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIIFV 89


>gi|229545835|ref|ZP_04434560.1| GTP-binding protein EngA [Enterococcus faecalis TX1322]
 gi|229550027|ref|ZP_04438752.1| GTP-binding protein EngA [Enterococcus faecalis ATCC 29200]
 gi|255972808|ref|ZP_05423394.1| GTP-binding protein engA [Enterococcus faecalis T1]
 gi|256619052|ref|ZP_05475898.1| GTP-binding protein engA [Enterococcus faecalis ATCC 4200]
 gi|256762478|ref|ZP_05503058.1| GTP-binding protein engA [Enterococcus faecalis T3]
 gi|256853114|ref|ZP_05558484.1| GTP-binding protein engA [Enterococcus faecalis T8]
 gi|256958969|ref|ZP_05563140.1| GTP-binding protein engA [Enterococcus faecalis DS5]
 gi|256965136|ref|ZP_05569307.1| GTP-binding protein engA [Enterococcus faecalis HIP11704]
 gi|257079000|ref|ZP_05573361.1| GTP-binding protein engA [Enterococcus faecalis JH1]
 gi|257085194|ref|ZP_05579555.1| GTP-binding protein engA [Enterococcus faecalis Fly1]
 gi|257086755|ref|ZP_05581116.1| GTP-binding protein engA [Enterococcus faecalis D6]
 gi|257416082|ref|ZP_05593076.1| GTP-binding protein engA [Enterococcus faecalis AR01/DG]
 gi|257422630|ref|ZP_05599620.1| GTP-binding protein engA [Enterococcus faecalis X98]
 gi|294781352|ref|ZP_06746695.1| ribosome-associated GTPase EngA [Enterococcus faecalis PC1.1]
 gi|300861220|ref|ZP_07107307.1| ribosome-associated GTPase EngA [Enterococcus faecalis TUSoD Ef11]
 gi|307271029|ref|ZP_07552312.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4248]
 gi|307273236|ref|ZP_07554482.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0855]
 gi|307274973|ref|ZP_07556136.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2134]
 gi|307289094|ref|ZP_07569050.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0109]
 gi|312900749|ref|ZP_07760046.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0470]
 gi|312951482|ref|ZP_07770378.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0102]
 gi|229304833|gb|EEN70829.1| GTP-binding protein EngA [Enterococcus faecalis ATCC 29200]
 gi|229309034|gb|EEN75021.1| GTP-binding protein EngA [Enterococcus faecalis TX1322]
 gi|255963826|gb|EET96302.1| GTP-binding protein engA [Enterococcus faecalis T1]
 gi|256598579|gb|EEU17755.1| GTP-binding protein engA [Enterococcus faecalis ATCC 4200]
 gi|256683729|gb|EEU23424.1| GTP-binding protein engA [Enterococcus faecalis T3]
 gi|256711573|gb|EEU26611.1| GTP-binding protein engA [Enterococcus faecalis T8]
 gi|256949465|gb|EEU66097.1| GTP-binding protein engA [Enterococcus faecalis DS5]
 gi|256955632|gb|EEU72264.1| GTP-binding protein engA [Enterococcus faecalis HIP11704]
 gi|256987030|gb|EEU74332.1| GTP-binding protein engA [Enterococcus faecalis JH1]
 gi|256993224|gb|EEU80526.1| GTP-binding protein engA [Enterococcus faecalis Fly1]
 gi|256994785|gb|EEU82087.1| GTP-binding protein engA [Enterococcus faecalis D6]
 gi|257157910|gb|EEU87870.1| GTP-binding protein engA [Enterococcus faecalis ARO1/DG]
 gi|257164454|gb|EEU94414.1| GTP-binding protein engA [Enterococcus faecalis X98]
 gi|294451582|gb|EFG20041.1| ribosome-associated GTPase EngA [Enterococcus faecalis PC1.1]
 gi|295112973|emb|CBL31610.1| ribosome-associated GTPase EngA [Enterococcus sp. 7L76]
 gi|300850259|gb|EFK78009.1| ribosome-associated GTPase EngA [Enterococcus faecalis TUSoD Ef11]
 gi|306499803|gb|EFM69164.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0109]
 gi|306508421|gb|EFM77528.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2134]
 gi|306510221|gb|EFM79245.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0855]
 gi|306512527|gb|EFM81176.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4248]
 gi|310630448|gb|EFQ13731.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0102]
 gi|311292230|gb|EFQ70786.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0470]
 gi|315027277|gb|EFT39209.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2137]
 gi|315029396|gb|EFT41328.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4000]
 gi|315033958|gb|EFT45890.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0017]
 gi|315036967|gb|EFT48899.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0027]
 gi|315144428|gb|EFT88444.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2141]
 gi|315147253|gb|EFT91269.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4244]
 gi|315152495|gb|EFT96511.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0031]
 gi|315155773|gb|EFT99789.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0043]
 gi|315158060|gb|EFU02077.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0312]
 gi|315160456|gb|EFU04473.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0645]
 gi|315164003|gb|EFU08020.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1302]
 gi|315169046|gb|EFU13063.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1341]
 gi|315169716|gb|EFU13733.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1342]
 gi|323480712|gb|ADX80151.1| small GTP-binding domain protein [Enterococcus faecalis 62]
 gi|327535121|gb|AEA93955.1| ribosome-associated GTPase EngA [Enterococcus faecalis OG1RF]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  IV+DI GTTRD +    +  EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    +E +D++L++
Sbjct: 236 RGKVYESTEKYSVMRAMRAIERSDIVLMV 264



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + ++ AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIIFV 89


>gi|254478618|ref|ZP_05091991.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
 gi|214035472|gb|EEB76173.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
          Length = 403

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 23/157 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I G  NAGKSSL NA+  + +AIV+  PGTT D +   ++ L    V + DTAGI   
Sbjct: 12  IAIFGKRNAGKSSLINAITNQPIAIVSPTPGTTTDPVYKSMEILPLGPVVLVDTAGI--- 68

Query: 281 DDIVE--KEGIKRTFLEVENADL-ILLLKEINSKK------EISFPKNIDFIFIGTKSDL 331
           DD+ E  K  +++T   +   D+ IL++ EI+         E+   K +  I +  K DL
Sbjct: 69  DDVGELGKLRVEKTLEVLNRTDIAILVVSEIDDLNFEKQLIELFREKKVPSIGVLNKIDL 128

Query: 332 YSTYTEEYDHL----------ISSFTGEGLEELINKI 358
              Y E+  +L          +S  T +G+EEL N+I
Sbjct: 129 DKDYKEKLSYLQSTLGIKFLPVSCATLKGIEELKNEI 165


>gi|78189608|ref|YP_379946.1| GTP-binding protein EngA [Chlorobium chlorochromatii CaD3]
 gi|123743429|sp|Q3AQ22|DER_CHLCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78171807|gb|ABB28903.1| Small GTP-binding protein domain [Chlorobium chlorochromatii CaD3]
          Length = 443

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN + ++  AIV   PG TRD    + + +G   K+ DT G     
Sbjct: 5   LALVGRPNVGKSTLFNRILRQRSAIVDPTPGVTRDRHIAEGEWQGKQFKLMDTGGYNTDG 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
           D++ K  +++T   + +AD IL + +
Sbjct: 65  DVLSKAMLEQTLHALADADSILFITD 90



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 199 LKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           L +D+   + +   GE+  +    + I+G  N GKSS  NAL   +  IV++IPGTTRD 
Sbjct: 156 LLDDVLEALPEAPEGEVKGDTAVHLAIVGRPNVGKSSFVNALLGTNRHIVSNIPGTTRDA 215

Query: 258 LTIDL--DLEGYLVKISDTAGIRETDDI 283
           +   L  + + YL  + DTAG+R+   I
Sbjct: 216 IDSRLMRNQQEYL--LIDTAGLRKRTKI 241


>gi|315150548|gb|EFT94564.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0012]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  IV+DI GTTRD +    +  EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    +E +D++L++
Sbjct: 236 RGKVYESTEKYSVMRAMRAIERSDIVLMV 264



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + ++ AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIIFV 89


>gi|256825342|ref|YP_003149302.1| small GTP-binding domain-containing protein [Kytococcus sedentarius
           DSM 20547]
 gi|256688735|gb|ACV06537.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Kytococcus sedentarius DSM 20547]
          Length = 527

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 9/113 (7%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            Q   G ++    ++ +LG  N GKSSL N LA  +  +V ++ GTTRD +   ++L G 
Sbjct: 255 PQSDAGRVVGGPRRVALLGRPNVGKSSLLNRLAGSERVVVDNVAGTTRDPVDEYIELGGR 314

Query: 268 LVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315
                DTAGIR    + +  G+      RT   +E A++ ++L  I++ +EI+
Sbjct: 315 TWMFVDTAGIRRR--VHQTRGVDFYASLRTQSALEKAEVAVVL--IDAGEEIA 363



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD +T   +  G    + DT G     
Sbjct: 94  VAIVGRPNVGKSTLVNRFLGRREAVVQDEPGVTRDRVTYPAEWNGVPFMVMDTGGWEIDA 153

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++K   ++  + VE AD+++ +
Sbjct: 154 KGIQKHVAQQAEVAVELADVVIFV 177


>gi|70726437|ref|YP_253351.1| GTP-binding protein EngA [Staphylococcus haemolyticus JCSC1435]
 gi|123660249|sp|Q4L6I0|DER_STAHJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|68447161|dbj|BAE04745.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD +  +   +G    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAVDTEYSYDGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLIV 264



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + ++ AD+I+ +
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFM 89


>gi|88608743|ref|YP_506419.1| putative GTP-binding protein EngA [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600912|gb|ABD46380.1| putative GTP-binding protein EngA [Neorickettsia sennetsu str.
           Miyayama]
          Length = 473

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I ++++ I   +   K G   +   K+ ILG  N GKSSL N    KD  +V  I GTTR
Sbjct: 150 ISYIESFIPEQLDTPKNGSEEQRRIKVAILGQPNVGKSSLMNKFVGKDRVLVLPIAGTTR 209

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINS 310
           D ++ +L  +    ++ DTAG+R+     D +EK    R       +D+++ + +I++
Sbjct: 210 DPISDELQWKCTTFELVDTAGLRKKQRVTDGLEKICNSRALRTSAESDVVIFMCDISN 267



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 20/166 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +++ +++ I+G +N GKS+LFN +AK+  +I  D  G TRDV+   + L +G  + + DT
Sbjct: 1   MQSTFRVSIVGKANVGKSTLFNKMAKEKRSITMDRKGVTRDVVVRRISLSDGKSLLLLDT 60

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL--KEINSKKEISFPK-------NIDFIFI 325
           AG          E ++RT   ++ +D++L +   +I+S +++ F         N   + +
Sbjct: 61  AGFNPQ----HPETVERTEYAIKESDMVLFVIDNKIDS-EDMLFANWLRRNAGNSKIVLV 115

Query: 326 GTKSDL-----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
             KSD       S +  +   LIS+    GL ELI+ I+S +  + 
Sbjct: 116 CNKSDRKDRDDCSLFGFQNVFLISAEHSLGLRELISYIESFIPEQL 161


>gi|149186494|ref|ZP_01864806.1| GTP-binding protein EngA [Erythrobacter sp. SD-21]
 gi|148829721|gb|EDL48160.1| GTP-binding protein EngA [Erythrobacter sp. SD-21]
          Length = 479

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++I+G  N GKS+LFN L  K +A+V D PG TRD    D ++ G    + DTAG  E D
Sbjct: 9   VIIIGRPNVGKSTLFNRLIGKKLALVDDQPGVTRDRRMGDAEIAGLEFTVVDTAGW-EDD 67

Query: 282 DIVEKEGIKRTFLEV--ENADLILLL 305
           D     G  R   EV  E AD  L +
Sbjct: 68  DPESLPGRMRKQTEVSLEGADAALFV 93



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL------EGYLVKISDT 274
           K+ I+G  NAGKS+L N L  +D  +     G TRD + +D D       E   +++ DT
Sbjct: 194 KLAIVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIAVDWDWFDPKANEQREIRLIDT 253

Query: 275 AGIRETDDIVEK 286
           AG+R+   + EK
Sbjct: 254 AGMRKRAKVTEK 265


>gi|87118473|ref|ZP_01074372.1| GTPase EngA [Marinomonas sp. MED121]
 gi|86166107|gb|EAQ67373.1| GTPase EngA [Marinomonas sp. MED121]
          Length = 454

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +I ++G  N GKS+L N +  +D  +V D+PGTTRD + I          + DTAG+R
Sbjct: 179 GTRIGVIGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYIRNEKEYTLIDTAGVR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305
               I   VEK  I +T   +++A++++++
Sbjct: 239 RRKHIKEAVEKFSIVKTLKAIQDANVVIVV 268



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD    D  +  +   + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNQLTRSRDALVADYPGLTRDRKYGDGRIGEHEFIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD +L L
Sbjct: 65  MGIDEKMARQSLLAIEEADTVLFL 88


>gi|296112016|ref|YP_003622398.1| GTP-binding protein EngA [Leuconostoc kimchii IMSNU 11154]
 gi|295833548|gb|ADG41429.1| GTP-binding protein EngA [Leuconostoc kimchii IMSNU 11154]
          Length = 437

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + +AIV D PG TRD L    +   Y  ++ DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRMAGERIAIVEDQPGVTRDRLYAPAEWLNYEFRMIDTGGIELGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    E   +  L ++ AD+I+++
Sbjct: 66  EPFLAEIRAQVELAIDEADVIVMV 89



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  I+G  N GKSS+ NA+  +D  IV+ I GTTRD + T  +  EG    + DTAG+R+
Sbjct: 177 KFSIIGRPNVGKSSIVNAMLGEDRVIVSSIEGTTRDAIDTRFVTPEGDEFIMVDTAGMRK 236

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    ++N+++IL++
Sbjct: 237 RGKVYENTEKYSVMRALKAIDNSNVILMV 265


>gi|268318173|ref|YP_003291892.1| small GTP-binding protein [Rhodothermus marinus DSM 4252]
 gi|262335707|gb|ACY49504.1| small GTP-binding protein [Rhodothermus marinus DSM 4252]
          Length = 434

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL  ++ +IVTDI GTTRD +   L   G  + + DTAG+R  
Sbjct: 176 RLAIVGRPNVGKSSLTNALLGQERSIVTDISGTTRDAVHSVLKYYGREIVLVDTAGLRRR 235

Query: 281 DDIVE 285
             I E
Sbjct: 236 SRIRE 240



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L +   AI  D PG TRD +    +  G    + DT G +  +
Sbjct: 4   VAIVGRPNVGKSTFFNRLTRSHEAITHDQPGVTRDRVYGTAEWNGVRFSVVDTGGYVPNS 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
            DI E+   ++  + +E AD IL + ++ +
Sbjct: 64  SDIFEQAIREQVQIAIEEADAILFMVDVTT 93


>gi|220931895|ref|YP_002508803.1| small GTP-binding protein [Halothermothrix orenii H 168]
 gi|254783157|sp|B8CWY9|DER_HALOH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|219993205|gb|ACL69808.1| small GTP-binding protein [Halothermothrix orenii H 168]
          Length = 438

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +  ++  IV+DIPGTTRD +   ++  G+   + DTAG+R+  
Sbjct: 180 VAIIGKPNVGKSSLVNYIVGQERVIVSDIPGTTRDAIDTLVEKNGHRYNLIDTAGLRKKS 239

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +    E     RT   ++ +D ++++
Sbjct: 240 RVKEATEYYSALRTIKAIDRSDGVIMM 266



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 21/164 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN LA   ++IV   P  TRD +  D++       I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTLFNRLAGYRISIVEGEPNVTRDRIYADVNWLDRSFIIVDTGGIDPYD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLL-----------KEI------NSKKEISFPKNIDFI 323
               K  +K +  + ++ A LIL +           +E+      ++KK I     +D  
Sbjct: 66  RDQIKNMVKYQAQMAIDEASLILFVVDGRNGLTATDEEVAAFLRKSNKKVILVVNKVD-D 124

Query: 324 FIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNK 365
           F   + D +  YT  +D L  IS+  G+   +L+++I ++L  K
Sbjct: 125 FKNMEEDCWEFYTLGFDKLIPISAEHGKNTGDLLDEIVNMLPEK 168


>gi|302039510|ref|YP_003799832.1| GTP-binding protein EngA [Candidatus Nitrospira defluvii]
 gi|300607574|emb|CBK43907.1| GTP-binding protein EngA [Candidatus Nitrospira defluvii]
          Length = 464

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L +D+ SH+++    E   +  +I I+G  N GKS+L N++  +   +V+++PGTTRD +
Sbjct: 181 LLDDLFSHMAEPLDEEATSDTPRIAIVGRPNVGKSTLVNSVLGEARVVVSNVPGTTRDPV 240

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
                 +     ++DTAGIR    +   +E   + R+   +  +D+ +LL
Sbjct: 241 DSVATFKDRQYVLTDTAGIRRRGRVERGIEGYSVARSLRAIGRSDIAVLL 290



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 18/144 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN +     AIV D+PG TRD    D        ++ DT G+    
Sbjct: 31  IALIGRPNVGKSTLFNRILGTRAAIVDDVPGVTRDRNYADSTYRNRRFRLVDTGGL---- 86

Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY- 335
           D    EG+     +++ L +  AD+++L+  ++++  ++ P + + +     SD    Y 
Sbjct: 87  DPTASEGMLSLIRQQSQLAIAEADILVLV--LDARSGLT-PADEEVVQTLRGSDKPVYYV 143

Query: 336 -----TEEYDHLISSFTGEGLEEL 354
                T + D L++ F   G E+L
Sbjct: 144 INKIDTPKADPLVADFYRLGQEQL 167


>gi|257468935|ref|ZP_05633029.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063183|ref|ZP_07927668.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688859|gb|EFS25694.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185]
          Length = 441

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  NAGKSSL N L+ ++  IV+DI GTTRD +   +  +     I DTAGIR  
Sbjct: 178 KLAIIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAIDTIVQYKDNKYMIIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R    ++ AD+ +L+
Sbjct: 238 SKVEESLEYYSVLRAIKTIKRADVCILM 265



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  + +  G    + DT G+   +
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDRIAIVDDMPGVTRDRLYRETEWNGVEFVVVDTGGLEPRN 64

Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305
           +      IK +  + +  AD+IL +
Sbjct: 65  NEFMMTKIKEQAEVAMNEADVILFV 89


>gi|152975027|ref|YP_001374544.1| GTP-binding protein EngA [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189037136|sp|A7GN41|DER_BACCN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|152023779|gb|ABS21549.1| small GTP-binding protein [Bacillus cytotoxicus NVH 391-98]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L ++++ H  + +  E      +  ++G  N GKSSL NAL  ++  IV+++ GTTRD +
Sbjct: 155 LLDEVAQHFPKVEEEEYDDETIRFCLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAV 214

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
                 +G    I DTAG+R+   +    EK  + R    +E +D++L++
Sbjct: 215 DTPYTKDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVV 264



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +  ++  + ++ AD+I+ +
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFM 89


>gi|259503207|ref|ZP_05746109.1| ribosome-associated GTPase EngA [Lactobacillus antri DSM 16041]
 gi|259168864|gb|EEW53359.1| ribosome-associated GTPase EngA [Lactobacillus antri DSM 16041]
          Length = 437

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHGEWLGKNFNMIDTGGIELSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +  +  ++  + ++ AD+I+L+ ++ S           I +  N   +    K D   
Sbjct: 66  QPLLTQIRQQAEIAIDEADVIVLVVDVESGVTDADEQVARILYRSNKPVVLAVNKVDNPE 125

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358
              + YD         + +SS  G GL +L++ +
Sbjct: 126 RRNDVYDFYSLGLGEPYPVSSVHGVGLGDLLDAV 159



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL N +  ++  IV+++ GTTRD + T  +  +G    + DTAGIR+   
Sbjct: 179 LIGRPNVGKSSLVNGILGENRVIVSNMAGTTRDAINTRFVAPDGQEFTMIDTAGIRKQGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLL 305
           I    E+  + R    ++++D++L++
Sbjct: 239 IYENTERYALMRAMRAIDDSDVVLVV 264


>gi|268680372|ref|YP_003304803.1| ribosome-associated GTPase EngA [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618403|gb|ACZ12768.1| ribosome-associated GTPase EngA [Sulfurospirillum deleyianum DSM
           6946]
          Length = 477

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL NAL  K  A+V+++ GTT D +   ++    ++   DTAG+R   
Sbjct: 210 VAIIGRVNVGKSSLLNALVGKQRAVVSNVAGTTIDPVDESIEYNEKVINFVDTAGLRRRG 269

Query: 282 DI--VEKEGIKRTFLEVENADLILLL 305
            I  +EK  + RT   +E A++ LL+
Sbjct: 270 KIEGIEKFALMRTKEMLERANIALLV 295



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSLFN +AK  +AI +D  GTTRD+ +  + +      I DT G+ ++
Sbjct: 3   KIAIIGLPNVGKSSLFNRIAKARIAITSDFSGTTRDIKSHQVYITEKPCLILDTGGLDKS 62

Query: 281 DDIVE 285
            ++ E
Sbjct: 63  TELFE 67


>gi|296127654|ref|YP_003634906.1| small GTP-binding protein [Brachyspira murdochii DSM 12563]
 gi|296019470|gb|ADG72707.1| small GTP-binding protein [Brachyspira murdochii DSM 12563]
          Length = 394

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 80/181 (44%), Gaps = 27/181 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTA 275
           N   I I G  NAGKSS+ NA+A +DVAIV+D  GTT D +   I+++  G  V I DTA
Sbjct: 8   NRTHIAIFGRRNAGKSSIINAIANQDVAIVSDTAGTTTDPVKKAIEINAIGACV-IVDTA 66

Query: 276 G-----------IRETDDIVEKEGIKRTFLEVE--NADLILLLKEINSKKEISFPKNIDF 322
           G           I +T  I+E   I     +    N D +L LK  N    +  P     
Sbjct: 67  GFDDEGELGALRIHKTRKIMESADIALLVFDSSFINNDYLLELKWKNELVSLEIP----V 122

Query: 323 IFIGTKSDLYSTY-------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           I +  K DL   Y        E +D  + S +      + N I+SI S+  K    SI  
Sbjct: 123 IAVLNKIDLNDNYKNIEQNIKEMFDLEVVSISANSRVNIDNLIESIKSSIPKTEEISITG 182

Query: 376 H 376
           H
Sbjct: 183 H 183


>gi|251781814|ref|YP_002996116.1| GTP-binding protein EngA [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390443|dbj|BAH80902.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|323126626|gb|ADX23923.1| GTP-binding protein EngA [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           I    EK  + R    ++ +D++L++  IN+++ I                       EY
Sbjct: 239 IYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  +I
Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTI 299



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAQIAMEEADVIVFV 89


>gi|322411159|gb|EFY02067.1| GTP-binding protein EngA [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           I    EK  + R    ++ +D++L++  IN+++ I                       EY
Sbjct: 239 IYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  +I
Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTI 299



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV ++ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVENVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKNQAQIAMEEADVIVFV 89


>gi|229815365|ref|ZP_04445700.1| hypothetical protein COLINT_02411 [Collinsella intestinalis DSM
           13280]
 gi|229809145|gb|EEP44912.1| hypothetical protein COLINT_02411 [Collinsella intestinalis DSM
           13280]
          Length = 429

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 27/162 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           ++I + G++NAGKSSL N L    V +  D    T D  T  L L G   V I+DT G  
Sbjct: 210 FRIALTGYTNAGKSSLLNQLCGPSV-LAQDKLFATLDPTTRSLSLPGGRNVTITDTVGFI 268

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI-----FIGTKSDLYS 333
           +       E  K T  EV +ADLIL + +I+   +  +P+++D +      +G       
Sbjct: 269 QKLPHGLVEAFKSTLSEVRDADLILRVVDIS---DADYPRHVDAVEHVLDEVGAADQPAV 325

Query: 334 TYTEEYDHL-----------------ISSFTGEGLEELINKI 358
           T   + D L                  S+ TGEG EEL+N+I
Sbjct: 326 TVYNKIDRLDSSVVESLRRRDPRAVFFSAVTGEGKEELLNRI 367


>gi|126736006|ref|ZP_01751750.1| GTP-binding protein EngA [Roseobacter sp. CCS2]
 gi|126714563|gb|EBA11430.1| GTP-binding protein EngA [Roseobacter sp. CCS2]
          Length = 485

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 18/160 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  +      + D+AG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEGRIADLRFTVIDSAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD ++    + T   VE AD+ L + +  +          +I   KN + I    K +
Sbjct: 63  ATDDSLQGRMRRLTERAVEMADVCLFMIDARAGVLPADEVFADILRKKNANVILAANKGE 122

Query: 331 ---LYSTYTEEY------DHLISSFTGEGLEELINKIKSI 361
                ++  E Y         +S+  GEG+ EL++ ++ I
Sbjct: 123 GKAADASILEAYALGLGEPIRMSAEHGEGMGELMDVLRPI 162



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  NAGKS+L N +  ++  +     G TRD +++  D  G  ++I DTAG+R+ 
Sbjct: 199 QIAVVGRPNAGKSTLINKIIGEERLLTGPEAGITRDAISVQQDWGGVPMRIFDTAGMRKK 258

Query: 281 DDIVEK 286
             + EK
Sbjct: 259 AKVQEK 264


>gi|332201131|gb|EGJ15202.1| GTP-binding protein engA [Streptococcus pneumoniae GA47901]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  IN+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372
            EYD  I+ F    G+G+  ++NK  ++             +  +F+ LP++
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 323



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFV 89


>gi|301164626|emb|CBW24185.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 391

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 8/132 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  ++ A+V+DI GTT D +   +++ G       DTAG
Sbjct: 8   NRLHIALFGKRNSGKSSLINALTNQNAALVSDIAGTTTDPVYQPMEIHGIGPCVFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILL------LKEINSKKEISFPKNIDFIFIGTKSD 330
             +  ++     I+RT    + AD+ L+      L E     E+   +NI ++ +  K+D
Sbjct: 68  FDDEGELGSLR-IERTLQAADKADIALMVCCDTELSEEQRWIELLKERNIPYLLVLNKAD 126

Query: 331 LYSTYTEEYDHL 342
           L     E  D L
Sbjct: 127 LLEKPDEVADKL 138


>gi|220924493|ref|YP_002499795.1| GTP-binding protein EngA [Methylobacterium nodulans ORS 2060]
 gi|219949100|gb|ACL59492.1| small GTP-binding protein [Methylobacterium nodulans ORS 2060]
          Length = 447

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  NAGKS+L N +  ++  +V    G TRD +++D +  G  +K+ DTAG+R  
Sbjct: 181 KVAIVGRPNAGKSTLINRMLGENRLLVGPEAGITRDSISLDWEWRGRRIKLHDTAGMRRR 240

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
              DD +EK  +      V  A+++++L
Sbjct: 241 ARVDDKLEKLAVSDGLRAVRFAEVVVVL 268



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 35/60 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  + +A+V D PG TRD    +  L   L  I DTAG+ E D
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGEARLGHLLFTIIDTAGLEEAD 65


>gi|148984151|ref|ZP_01817446.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|147923440|gb|EDK74553.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|301800517|emb|CBW33156.1| GTP-binding protein EngA [Streptococcus pneumoniae OXC141]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  IN+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372
            EYD  I+ F    G+G+  ++NK  ++             +  +F+ LP++
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 323



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFV 89


>gi|289423092|ref|ZP_06424907.1| ribosome-associated GTPase EngA [Peptostreptococcus anaerobius
           653-L]
 gi|289156423|gb|EFD05073.1| ribosome-associated GTPase EngA [Peptostreptococcus anaerobius
           653-L]
          Length = 439

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    ++IV D PG TRD +  +++       I DT GI  E+
Sbjct: 7   VAIVGRPNVGKSTLFNKLTGTKISIVEDTPGVTRDRIFGEVEWLNKYFTIIDTGGIEPES 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI+  +   +  L V+ A +IL +
Sbjct: 67  DDIIISQMRNQAMLAVDMAHVILFV 91



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I G  NAGKSS+ N +  ++  IV+ I GTTRD +    +       + DTAGIR  
Sbjct: 179 KVAITGKPNAGKSSILNNILGEERVIVSPIAGTTRDAIDTYFEQGDNKFLLIDTAGIRRR 238

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VE+  + R+   V+ AD++L++
Sbjct: 239 SKVYENVERFSVIRSMSAVDRADVVLIV 266


>gi|78778772|ref|YP_396884.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9312]
 gi|123554591|sp|Q31CE7|DER_PROM9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78712271|gb|ABB49448.1| Small GTP-binding protein domain [Prochlorococcus marinus str. MIT
           9312]
          Length = 457

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL N+++ +  AIV+DI GTT D +   +       KI DTAGIR   ++
Sbjct: 181 IIGRPNVGKSSLLNSISGEKRAIVSDISGTTTDSIDTLIKKGDTQWKIVDTAGIRRKKNV 240

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E  GI R F  ++ +D+ +L+
Sbjct: 241 KYGTEFFGINRAFKSIDRSDVCVLV 265



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   +I DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN 309
           D      I+ + FL +E A L LL+ + N
Sbjct: 66  DSEFLPEIRAQVFLALEEASLALLVVDGN 94


>gi|265767007|ref|ZP_06094836.1| GTP-binding protein Era [Bacteroides sp. 2_1_16]
 gi|263253384|gb|EEZ24860.1| GTP-binding protein Era [Bacteroides sp. 2_1_16]
          Length = 391

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 8/132 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276
           N   I + G  N+GKSSL NAL  ++ A+V+DI GTT D +   +++ G    +  DTAG
Sbjct: 8   NRLHIALFGKRNSGKSSLINALTNQNAALVSDIAGTTTDPVYQPMEIHGIGPCVFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILL------LKEINSKKEISFPKNIDFIFIGTKSD 330
             +  ++     I+RT    + AD+ L+      L E     E+   +NI ++ +  K+D
Sbjct: 68  FDDEGELGSLR-IERTLQAADKADIALMVCCDTELSEEQRWIELLKERNIPYLLVLNKAD 126

Query: 331 LYSTYTEEYDHL 342
           L     E  D L
Sbjct: 127 LLEKPDEVADKL 138


>gi|148994026|ref|ZP_01823382.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|168484900|ref|ZP_02709845.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1873-00]
 gi|168488574|ref|ZP_02712773.1| GTP-binding protein EngA [Streptococcus pneumoniae SP195]
 gi|307127923|ref|YP_003879954.1| GTP-binding protein EngA [Streptococcus pneumoniae 670-6B]
 gi|147927493|gb|EDK78521.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|172041949|gb|EDT49995.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1873-00]
 gi|183572668|gb|EDT93196.1| GTP-binding protein EngA [Streptococcus pneumoniae SP195]
 gi|306484985|gb|ADM91854.1| GTP-binding protein EngA [Streptococcus pneumoniae 670-6B]
 gi|332072538|gb|EGI83021.1| GTP-binding protein engA [Streptococcus pneumoniae GA17570]
 gi|332072881|gb|EGI83362.1| GTP-binding protein engA [Streptococcus pneumoniae GA17545]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  IN+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372
            EYD  I+ F    G+G+  ++NK  ++             +  +F+ LP++
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 323



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFV 89


>gi|307707079|ref|ZP_07643876.1| small GTP-binding domain protein [Streptococcus mitis SK321]
 gi|307617605|gb|EFN96775.1| small GTP-binding domain protein [Streptococcus mitis SK321]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  IN+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372
            EYD  I+ F    G+G+  ++NK  ++             +  +F+ LP++
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKSWEEDIREQFQYLPYA 323



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFV 89


>gi|225024393|ref|ZP_03713585.1| hypothetical protein EIKCOROL_01268 [Eikenella corrodens ATCC
           23834]
 gi|224942774|gb|EEG23983.1| hypothetical protein EIKCOROL_01268 [Eikenella corrodens ATCC
           23834]
          Length = 485

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKS+L NA+  ++  I  D+ GTTRD + ID + +G    I DTAG+R   +
Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFERDGKPFTIIDTAGVRRRGK 238

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            ++ VEK  + +    VE +++ +L+  ++++++I+
Sbjct: 239 VEEAVEKFSVIKAMQAVEASNVAVLV--LDAQQDIA 272



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVVDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D  +  E  K+T   V+ AD ++ L
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVIFL 89


>gi|149006625|ref|ZP_01830324.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP18-BS74]
 gi|147761923|gb|EDK68886.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP18-BS74]
          Length = 358

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  IN+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372
            EYD  I+ F    G+G+  ++NK  ++             +  +F+ LP++
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 323



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFV 89


>gi|313678251|ref|YP_004055991.1| GTP-binding protein Era [Mycoplasma bovis PG45]
 gi|312950737|gb|ADR25332.1| GTP-binding protein Era [Mycoplasma bovis PG45]
          Length = 290

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 47/88 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSL N + K D+AIV+++P TTRD +        Y     DT GI +  
Sbjct: 6   ISILGRPNVGKSSLLNKIIKYDLAIVSNVPQTTRDQIMGVYTENDYQFVFVDTPGIHKPL 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
           +++ +   K  F  + + D IL L  +N
Sbjct: 66  NLLGESLNKEAFSSINDIDCILFLTPVN 93


>gi|15901543|ref|NP_346147.1| GTP-binding protein EngA [Streptococcus pneumoniae TIGR4]
 gi|15903596|ref|NP_359146.1| GTP-binding protein EngA [Streptococcus pneumoniae R6]
 gi|111657418|ref|ZP_01408170.1| hypothetical protein SpneT_02001366 [Streptococcus pneumoniae
           TIGR4]
 gi|116515879|ref|YP_816974.1| GTP-binding protein EngA [Streptococcus pneumoniae D39]
 gi|148989364|ref|ZP_01820732.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|148997762|ref|ZP_01825326.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|149011426|ref|ZP_01832673.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP19-BS75]
 gi|149020788|ref|ZP_01835317.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|168487543|ref|ZP_02712051.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1087-00]
 gi|168491409|ref|ZP_02715552.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC0288-04]
 gi|168493616|ref|ZP_02717759.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC3059-06]
 gi|168575101|ref|ZP_02721064.1| GTP-binding protein EngA [Streptococcus pneumoniae MLV-016]
 gi|169832823|ref|YP_001695085.1| GTP-binding protein EngA [Streptococcus pneumoniae Hungary19A-6]
 gi|182684651|ref|YP_001836398.1| GTP-binding protein EngA [Streptococcus pneumoniae CGSP14]
 gi|194398265|ref|YP_002038320.1| GTP-binding protein EngA [Streptococcus pneumoniae G54]
 gi|221232445|ref|YP_002511598.1| GTP-binding protein EngA [Streptococcus pneumoniae ATCC 700669]
 gi|225855139|ref|YP_002736651.1| GTP-binding protein EngA [Streptococcus pneumoniae JJA]
 gi|225857322|ref|YP_002738833.1| GTP-binding protein EngA [Streptococcus pneumoniae P1031]
 gi|225859462|ref|YP_002740972.1| GTP-binding protein EngA [Streptococcus pneumoniae 70585]
 gi|225861533|ref|YP_002743042.1| GTP-binding protein EngA [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649250|ref|ZP_04523502.1| GTP-binding protein EngA [Streptococcus pneumoniae CCRI 1974]
 gi|237822010|ref|ZP_04597855.1| GTP-binding protein EngA [Streptococcus pneumoniae CCRI 1974M2]
 gi|289167434|ref|YP_003445703.1| phosphoglycerate dehydrogenase-related protein, GTP-binding protein
           [Streptococcus mitis B6]
 gi|298229308|ref|ZP_06962989.1| GTP-binding protein EngA [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255748|ref|ZP_06979334.1| GTP-binding protein EngA [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503453|ref|YP_003725393.1| GTP-binding protein EngA [Streptococcus pneumoniae TCH8431/19A]
 gi|303254319|ref|ZP_07340427.1| GTP-binding protein EngA [Streptococcus pneumoniae BS455]
 gi|303258643|ref|ZP_07344623.1| GTP-binding protein EngA [Streptococcus pneumoniae SP-BS293]
 gi|303261806|ref|ZP_07347752.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS292]
 gi|303263670|ref|ZP_07349592.1| GTP-binding protein EngA [Streptococcus pneumoniae BS397]
 gi|303266846|ref|ZP_07352725.1| GTP-binding protein EngA [Streptococcus pneumoniae BS457]
 gi|303269910|ref|ZP_07355651.1| GTP-binding protein EngA [Streptococcus pneumoniae BS458]
 gi|307068334|ref|YP_003877300.1| putative GTPase [Streptococcus pneumoniae AP200]
 gi|307705427|ref|ZP_07642284.1| small GTP-binding domain protein [Streptococcus mitis SK597]
 gi|307707485|ref|ZP_07643967.1| GTP-binding protein EngA [Streptococcus mitis NCTC 12261]
 gi|307709642|ref|ZP_07646094.1| small GTP-binding domain protein [Streptococcus mitis SK564]
 gi|322377454|ref|ZP_08051945.1| ribosome-associated GTPase EngA [Streptococcus sp. M334]
 gi|54037053|sp|P64063|DER_STRR6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|54040976|sp|P64062|DER_STRPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|122278180|sp|Q04J64|DER_STRP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238688353|sp|B1I766|DER_STRPI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238690849|sp|B5E756|DER_STRP4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238691183|sp|B2IRW4|DER_STRPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783168|sp|C1C8U6|DER_STRP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783169|sp|B8ZMH4|DER_STRPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783171|sp|C1CFT0|DER_STRZJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783172|sp|C1CM45|DER_STRZP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783173|sp|C1CSX0|DER_STRZT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|14973204|gb|AAK75787.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae TIGR4]
 gi|15459218|gb|AAL00357.1| Phosphoglycerate dehydrogenase [Streptococcus pneumoniae R6]
 gi|116076455|gb|ABJ54175.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae D39]
 gi|147756261|gb|EDK63303.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|147764416|gb|EDK71347.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP19-BS75]
 gi|147925114|gb|EDK76194.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|147930429|gb|EDK81412.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|168995325|gb|ACA35937.1| GTP-binding protein EngA [Streptococcus pneumoniae Hungary19A-6]
 gi|182629985|gb|ACB90933.1| GTP-binding protein EngA [Streptococcus pneumoniae CGSP14]
 gi|183569654|gb|EDT90182.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1087-00]
 gi|183574158|gb|EDT94686.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC0288-04]
 gi|183576280|gb|EDT96808.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC3059-06]
 gi|183578800|gb|EDT99328.1| GTP-binding protein EngA [Streptococcus pneumoniae MLV-016]
 gi|194357932|gb|ACF56380.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae G54]
 gi|220674906|emb|CAR69481.1| GTP-binding protein EngA [Streptococcus pneumoniae ATCC 700669]
 gi|225721482|gb|ACO17336.1| GTP-binding protein EngA [Streptococcus pneumoniae 70585]
 gi|225723540|gb|ACO19393.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae JJA]
 gi|225724777|gb|ACO20629.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae P1031]
 gi|225727275|gb|ACO23126.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|288907001|emb|CBJ21835.1| phosphoglycerate dehydrogenase-related protein, GTP-binding protein
           [Streptococcus mitis B6]
 gi|298239048|gb|ADI70179.1| GTP-binding protein EngA [Streptococcus pneumoniae TCH8431/19A]
 gi|301794686|emb|CBW37137.1| GTP-binding protein EngA [Streptococcus pneumoniae INV104]
 gi|301802409|emb|CBW35163.1| GTP-binding protein EngA [Streptococcus pneumoniae INV200]
 gi|302598670|gb|EFL65708.1| GTP-binding protein EngA [Streptococcus pneumoniae BS455]
 gi|302636889|gb|EFL67378.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS292]
 gi|302640144|gb|EFL70599.1| GTP-binding protein EngA [Streptococcus pneumoniae SP-BS293]
 gi|302640564|gb|EFL70970.1| GTP-binding protein EngA [Streptococcus pneumoniae BS458]
 gi|302643614|gb|EFL73882.1| GTP-binding protein EngA [Streptococcus pneumoniae BS457]
 gi|302646708|gb|EFL76933.1| GTP-binding protein EngA [Streptococcus pneumoniae BS397]
 gi|306409871|gb|ADM85298.1| Predicted GTPase [Streptococcus pneumoniae AP200]
 gi|307616437|gb|EFN95628.1| GTP-binding protein EngA [Streptococcus mitis NCTC 12261]
 gi|307619540|gb|EFN98664.1| small GTP-binding domain protein [Streptococcus mitis SK564]
 gi|307621026|gb|EFO00106.1| small GTP-binding domain protein [Streptococcus mitis SK597]
 gi|321281654|gb|EFX58663.1| ribosome-associated GTPase EngA [Streptococcus sp. M334]
 gi|327389894|gb|EGE88239.1| GTP-binding protein engA [Streptococcus pneumoniae GA04375]
 gi|332074047|gb|EGI84525.1| GTP-binding protein engA [Streptococcus pneumoniae GA41301]
 gi|332199734|gb|EGJ13809.1| GTP-binding protein engA [Streptococcus pneumoniae GA41317]
 gi|332200267|gb|EGJ14340.1| GTP-binding protein engA [Streptococcus pneumoniae GA47368]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  IN+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372
            EYD  I+ F    G+G+  ++NK  ++             +  +F+ LP++
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 323



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFV 89


>gi|256823051|ref|YP_003147014.1| small GTP-binding protein [Kangiella koreensis DSM 16069]
 gi|256796590|gb|ACV27246.1| small GTP-binding protein [Kangiella koreensis DSM 16069]
          Length = 467

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G K+ I+G  N GKS+L N    ++  +V D+PGTTRD + I+++       + DTAG+
Sbjct: 179 QGLKLAIVGRPNVGKSTLVNRFLGEERVVVYDLPGTTRDSIYIEMERRDKKYTLIDTAGV 238

Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305
           R   +  + VEK  + +T   ++++++ +++
Sbjct: 239 RRRGKVKETVEKFSVLKTLQAIDDSNVSIMV 269



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   A+V ++PG TRD       L+G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDALVANLPGLTRDRQYGQATLKGQKFIVVDTGGIAGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++     ++ L +  A+++L L
Sbjct: 65  EGIDGLMAGQSLLAITEANIVLFL 88


>gi|163797497|ref|ZP_02191448.1| GTP-binding protein engA [alpha proteobacterium BAL199]
 gi|159177246|gb|EDP61805.1| GTP-binding protein engA [alpha proteobacterium BAL199]
          Length = 467

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKS+LFN L     A+V D PG TRD    D  +     ++ DTAG+ + 
Sbjct: 4   KVAVIGRPNVGKSTLFNRLTGTRHALVDDTPGVTRDRREGDGRIADLSFRVIDTAGLEDA 63

Query: 281 -DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            DD +E    ++T   V  ADL+ +L  I+++  I+
Sbjct: 64  FDDSLEARMRRQTERAVAEADLVFML--IDARAGIT 97



 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKS+L N L  +D  +     G TRD + ++       +++ DTAG+R  
Sbjct: 201 RLAIVGRPNVGKSTLVNRLIGEDRLLTGPEAGITRDAIEVEWQYRDRPIRLVDTAGMRRK 260

Query: 281 DDIVEK 286
             + EK
Sbjct: 261 ARVQEK 266


>gi|152995389|ref|YP_001340224.1| small GTP-binding protein [Marinomonas sp. MWYL1]
 gi|189037150|sp|A6VV10|DER_MARMS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|150836313|gb|ABR70289.1| small GTP-binding protein [Marinomonas sp. MWYL1]
          Length = 445

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD    D  L  +   + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNQLTRSRDALVADYPGLTRDRKYGDGKLGEHEFIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEI------SFPKNIDFIFIGTK--- 328
             ++++  +++ L +E AD++L L +    +N   E+         K +  +   T    
Sbjct: 65  QGIDEKMARQSLLAIEEADVVLFLVDGRHGLNPADEMIASHLRRSNKQVSLVVNKTDGIN 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKI 358
                +D YS    E  H I++  G+G+  LI+K+
Sbjct: 125 EDIALADFYSLGFGEL-HPIAASHGKGVHVLIDKV 158



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +I ++G  N GKS+L N +  +D  +V D+PGTTRD + I          + DTAGIR
Sbjct: 179 GIRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYVRNDKEYTLIDTAGIR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305
               +   VEK  I +    +++A++++++
Sbjct: 239 RRKHVKEAVEKFSIVKALQAIQDANVVIVV 268


>gi|225018908|ref|ZP_03708100.1| hypothetical protein CLOSTMETH_02859 [Clostridium methylpentosum
           DSM 5476]
 gi|224948314|gb|EEG29523.1| hypothetical protein CLOSTMETH_02859 [Clostridium methylpentosum
           DSM 5476]
          Length = 397

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 34/186 (18%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  N+GKSSL NA+  +++A+V+D+ GTT D +   +++ G     + DTAG
Sbjct: 11  NRLHIAIFGKRNSGKSSLINAITGQEIALVSDVAGTTTDPVYKAMEIHGIGPCMLIDTAG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-------------KEINSKKEISFPKNIDFI 323
             +T  + E+  +++T   ++  D+ ++L             +E+N +K       I  +
Sbjct: 71  FDDTGKLGEQR-VEKTRQAMDKTDVAIVLFGDCYTDYEQRWIEELNKRK-------IPVV 122

Query: 324 FIGTKSDLYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            +  K D+     E   H          + S+ +  G+ ELI+++   L   F++   SI
Sbjct: 123 AVINKGDILENIPEISQHVWEKFGLKPIVTSALSRSGIRELIDQLIRALPEDFEQK--SI 180

Query: 374 PSHKRH 379
            +H  H
Sbjct: 181 TAHLVH 186


>gi|223043265|ref|ZP_03613312.1| ribosome-associated GTPase EngA [Staphylococcus capitis SK14]
 gi|222443476|gb|EEE49574.1| ribosome-associated GTPase EngA [Staphylococcus capitis SK14]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD +  +   EG    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSYEGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVI 264



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + ++ AD+I+ +
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFM 89


>gi|218887353|ref|YP_002436674.1| GTP-binding protein EngA [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758307|gb|ACL09206.1| small GTP-binding protein [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 506

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  NAGKSSL NAL  +   IV+D+ GTTRD + +  +     +   DTAG+R  
Sbjct: 244 RLAMLGRPNAGKSSLVNALTGQQRMIVSDMAGTTRDSVDVSFESGDKTITFVDTAGVRRR 303

Query: 281 D---DIVEKEGIKRTFLEVENADLILLL 305
               D VE+  +  +      A + LL+
Sbjct: 304 SRITDSVERYSVNASLKSTTKAHVTLLV 331



 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGI 277
           KI ++G  N GKS+LFN L + + AI  D PG TRD +   +   G     I DT GI
Sbjct: 19  KIALVGRPNVGKSTLFNRLIRANRAITHDRPGVTRDRMEGQVRSRGKQTFAIVDTGGI 76


>gi|303239164|ref|ZP_07325693.1| small GTP-binding protein [Acetivibrio cellulolyticus CD2]
 gi|302593209|gb|EFL62928.1| small GTP-binding protein [Acetivibrio cellulolyticus CD2]
          Length = 407

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISD 273
           + N   I I G  NAGKS+L NAL  +D+A+V+++PGTT D +  T++L   G +V I D
Sbjct: 6   VGNRLHIAIFGRRNAGKSTLINALTGQDIAVVSNVPGTTTDPVYKTMELLPLGPVV-IID 64

Query: 274 TAGIRETDDI 283
           TAGI +  D+
Sbjct: 65  TAGIDDVGDL 74


>gi|60683114|ref|YP_213258.1| hypothetical protein BF3665 [Bacteroides fragilis NCTC 9343]
 gi|60494548|emb|CAH09347.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 391

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 8/132 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276
           N   I + G  N+GKSSL NAL  ++ A+V+DI GTT D +   +++ G    +  DTAG
Sbjct: 8   NRLHIALFGKRNSGKSSLINALTNQNAALVSDIAGTTTDPVYQPMEIHGIGPCVFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILL------LKEINSKKEISFPKNIDFIFIGTKSD 330
             +  ++     I+RT    + AD+ L+      L E     E+   +NI ++ +  K+D
Sbjct: 68  FDDEGELGSLR-IERTLQAADKADIALMVCCDTELSEEQRWIELLKERNIPYLLVLNKAD 126

Query: 331 LYSTYTEEYDHL 342
           L     E  D L
Sbjct: 127 LLEKPDEVADKL 138


>gi|53715179|ref|YP_101171.1| putative GTPase [Bacteroides fragilis YCH46]
 gi|253566314|ref|ZP_04843768.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52218044|dbj|BAD50637.1| putative GTPase [Bacteroides fragilis YCH46]
 gi|251945418|gb|EES85856.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 391

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 8/132 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276
           N   I + G  N+GKSSL NAL  ++ A+V+DI GTT D +   +++ G    +  DTAG
Sbjct: 8   NRLHIALFGKRNSGKSSLINALTNQNAALVSDIAGTTTDPVYQPMEIHGIGPCVFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILL------LKEINSKKEISFPKNIDFIFIGTKSD 330
             +  ++     I+RT    + AD+ L+      L E     E+   +NI ++ +  K+D
Sbjct: 68  FDDEGELGSLR-IERTLQAADKADIALMVCCDTELSEEQRWIELLKERNIPYLLVLNKAD 126

Query: 331 LYSTYTEEYDHL 342
           L     E  D L
Sbjct: 127 LLEKPDEVADKL 138


>gi|297608564|ref|NP_001061774.2| Os08g0407000 [Oryza sativa Japonica Group]
 gi|255678439|dbj|BAF23688.2| Os08g0407000 [Oryza sativa Japonica Group]
          Length = 75

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 36/48 (75%)

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           + + AIVT+I GTTRDV+  ++ + G  + + DTAGIRETDDIVEK G
Sbjct: 5   QSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGIRETDDIVEKIG 52


>gi|227822913|ref|YP_002826885.1| GTP-binding protein EngA [Sinorhizobium fredii NGR234]
 gi|254783163|sp|C3MG60|DER_RHISN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|227341914|gb|ACP26132.1| GTP-binding protein, essential for cell growth [Sinorhizobium
           fredii NGR234]
          Length = 476

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L     +I DTAG+ +
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGLEQ 62

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLL 305
           +  D ++     +T   ++ ADL L +
Sbjct: 63  SAPDSLQGRMWAQTEQAIDEADLSLFV 89



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N    +D  +     G TRD ++++ +  G  +K+ DTAG+R  
Sbjct: 206 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWEWRGRTIKMFDTAGMRRK 265

Query: 281 DDIVEK 286
             + EK
Sbjct: 266 AKVQEK 271


>gi|39997323|ref|NP_953274.1| GTP-binding protein EngA [Geobacter sulfurreducens PCA]
 gi|81832003|sp|Q74AX4|DER_GEOSL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|39984214|gb|AAR35601.1| GTP-binding protein Era, putative [Geobacter sulfurreducens PCA]
 gi|298506260|gb|ADI84983.1| GTPase EngA [Geobacter sulfurreducens KN400]
          Length = 438

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L +++ + + Q       RN  KI ++G  N GKSSL N L   +  +    PGTTRD +
Sbjct: 156 LMDEVVAALPQRTTSPEERNATKIAVVGRPNVGKSSLVNRLLGYERVVANPTPGTTRDSV 215

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
                       + DTAGIR   +T   +EK  +  +   +E AD++L++
Sbjct: 216 DTWFTCNKKRYLLIDTAGIRRKGKTTQKIEKYSVVDSLRSIERADVVLIV 265



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISDTAGIR 278
           + I+G  N GKS+LFN L  +  AIV D+PG TRD         D+   L+   DT G  
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGRRKAIVDDMPGVTRDRNYETVTRFDVPFILI---DTGGFE 62

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            E+ D + ++  +++ L +E AD+IL L
Sbjct: 63  PESSDRLLQQMREQSRLAMEEADVILFL 90


>gi|221485521|gb|EEE23802.1| GTP-binding protein, putative [Toxoplasma gondii GT1]
          Length = 499

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 100/240 (41%), Gaps = 42/240 (17%)

Query: 169 RSFIEA--DLDFSEEEDVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIV 223
           R F+ A    +F   ED+   S ++     +     I++H  +    L ++  N + ++ 
Sbjct: 242 RPFVHAFQPREFLNREDLPWLSPEQRKYSRILFGKPIAAHPVLVAQTLHKLPHNPWPQVA 301

Query: 224 ILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDL-------DLEGY-LVKISDT 274
            +GHSN GKSSL NAL   +DVA     PG TR + T DL       DL GY   ++   
Sbjct: 302 AVGHSNVGKSSLLNALMHGRDVARSCSKPGRTRHLFTFDLGNHLSLVDLPGYGFARVKPQ 361

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----KNIDFIFIGTKSD 330
             ++E   I+ +E   R+        L+   K + +  E  +     KN+ F  + TK+D
Sbjct: 362 --LKEEWAILIEEYFTRSKQLRRVLSLVDATKGVEALDERLWQLLAEKNLPFQVVLTKAD 419

Query: 331 LYS----------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           L +                      T    + H +SS    G+ EL   + ++ S+  K+
Sbjct: 420 LLTARELHAAMFDVLSRLQTVEKKETLLHPFVHAVSSRHNHGIPELRASLAAVASDWRKR 479


>gi|312139844|ref|YP_004007180.1| gtpase [Rhodococcus equi 103S]
 gi|325674279|ref|ZP_08153968.1| ribosome-associated GTPase EngA [Rhodococcus equi ATCC 33707]
 gi|311889183|emb|CBH48497.1| GTPase [Rhodococcus equi 103S]
 gi|325554959|gb|EGD24632.1| ribosome-associated GTPase EngA [Rhodococcus equi ATCC 33707]
          Length = 481

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD ++ D +  G    + DT G     
Sbjct: 45  LAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYDANWAGRRFMVQDTGGWEPDA 104

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYS 333
             +++   ++  L +  AD ILL+ +          +   +        I +  K D   
Sbjct: 105 KGLQQSVARQAELAMNTADAILLVVDAVVGATATDEAAVRVLRRSKTPVILVANKVDDAR 164

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSIL 362
           T  E            H++S+  G G  +L++++  +L
Sbjct: 165 TEAEAAALWSLGLGEPHMVSATHGRGTGDLLDEVLRVL 202



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 9/100 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N L+  + ++V D+ GTT D +   ++L G + K  DTAG+R+ 
Sbjct: 217 RVALVGKPNVGKSSLLNKLSGDERSVVHDVAGTTVDPVDSLVELGGKVWKFVDTAGLRKK 276

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315
             +    G +     RT   +E A++ +LL  I++ K I+
Sbjct: 277 --VSHASGHEFYASLRTKSAIEAAEVAILL--IDASKPIT 312


>gi|21909785|ref|NP_664053.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS315]
 gi|28896522|ref|NP_802872.1| GTP-binding protein EngA [Streptococcus pyogenes SSI-1]
 gi|26006710|sp|Q8K8J8|DER_STRP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|21903970|gb|AAM78856.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes
           MGAS315]
 gi|28811776|dbj|BAC64705.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes
           SSI-1]
          Length = 436

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           I    EK  + R    ++ +D++L++  IN+++ I                       EY
Sbjct: 239 IYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  +I
Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDAI 299



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAQIAMEEADVIVFV 89


>gi|229029283|ref|ZP_04185373.1| GTP-binding protein engA [Bacillus cereus AH1271]
 gi|229172241|ref|ZP_04299805.1| GTP-binding protein engA [Bacillus cereus MM3]
 gi|228611229|gb|EEK68487.1| GTP-binding protein engA [Bacillus cereus MM3]
 gi|228732031|gb|EEL82923.1| GTP-binding protein engA [Bacillus cereus AH1271]
          Length = 436

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NAL  ++  IV++I GTTRD +      +G    I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D++L++
Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +  ++  + ++ AD+I+ +
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFM 89


>gi|145579207|pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
           From Thermus Thermophilus Hb8
 gi|145579208|pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
           From Thermus Thermophilus Hb8
          Length = 161

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 26/160 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGI 277
           +K+VI+G  N GKSSLFN L KK  A+V D+PG TRD+    ++ D   +L  + DT G+
Sbjct: 2   HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFL--LVDTGGL 59

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----------KNIDFIFIGT 327
              D   EK+  ++    +E+A+++L    ++ + E++            K    I + T
Sbjct: 60  WSGDKW-EKKIQEKVDRALEDAEVVLF--AVDGRAELTQADYEVAEYLRRKGKPVILVAT 116

Query: 328 KSD-------LYSTYTEEYDHLI--SSFTGEGLEELINKI 358
           K D       L   Y   +   I  SS    GLEEL+  I
Sbjct: 117 KVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAI 156


>gi|15674498|ref|NP_268672.1| GTP-binding protein EngA [Streptococcus pyogenes M1 GAS]
 gi|19745453|ref|NP_606589.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS8232]
 gi|50913661|ref|YP_059633.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS10394]
 gi|56808746|ref|ZP_00366464.1| COG1160: Predicted GTPases [Streptococcus pyogenes M49 591]
 gi|71910101|ref|YP_281651.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS5005]
 gi|94987918|ref|YP_596019.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS9429]
 gi|94991802|ref|YP_599901.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS2096]
 gi|209558845|ref|YP_002285317.1| GTP-binding protein EngA [Streptococcus pyogenes NZ131]
 gi|54037054|sp|P64065|DER_STRP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|54040977|sp|P64064|DER_STRP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|68052093|sp|Q5XDR3|DER_STRP6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225861|sp|Q1JDF1|DER_STRPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225862|sp|Q1JNC4|DER_STRPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238058978|sp|B5XJW0|DER_STRPZ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|13621599|gb|AAK33393.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes M1
           GAS]
 gi|19747567|gb|AAL97088.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes
           MGAS8232]
 gi|50902735|gb|AAT86450.1| GTP-binding protein [Streptococcus pyogenes MGAS10394]
 gi|71852883|gb|AAZ50906.1| GTP-binding protein [Streptococcus pyogenes MGAS5005]
 gi|94541426|gb|ABF31475.1| GTP-binding protein [Streptococcus pyogenes MGAS9429]
 gi|94545310|gb|ABF35357.1| GTP-binding protein [Streptococcus pyogenes MGAS2096]
 gi|209540046|gb|ACI60622.1| GTP-binding protein EngA [Streptococcus pyogenes NZ131]
          Length = 436

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           I    EK  + R    ++ +D++L++  IN+++ I                       EY
Sbjct: 239 IYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  +I
Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTI 299



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAQIAMEEADVIVFV 89


>gi|332686552|ref|YP_004456326.1| GTP-binding protein EngA [Melissococcus plutonius ATCC 35311]
 gi|332370561|dbj|BAK21517.1| GTP-binding protein EngA [Melissococcus plutonius ATCC 35311]
          Length = 436

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D+PG TRD +    +  G    I DT GI   +
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDVPGVTRDRIYATGEWLGQAFSIIDTGGIDLGN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
           +   ++  ++  + +E AD+IL +  I
Sbjct: 66  EPFIEQIKQQAEIAIEEADVILFITSI 92



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  IV++I GTTRD + T      G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSEIEGTTRDAIDTYFTSPNGQKFLMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    +E +D++L++
Sbjct: 236 RGKVYENTEKYSVMRAMRAIERSDIVLMV 264


>gi|302386477|ref|YP_003822299.1| ribosome-associated GTPase EngA [Clostridium saccharolyticum WM1]
 gi|302197105|gb|ADL04676.1| ribosome-associated GTPase EngA [Clostridium saccharolyticum WM1]
          Length = 442

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 6/116 (5%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           +S+  L D+L   ++++ H    +  E   +  +I I+G  N GKSS+ N L  ++  IV
Sbjct: 149 ASRLGLGDLL---DEVAKHFDLSETEEEEDDRPRIAIVGKPNVGKSSIINQLLGENRVIV 205

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENAD 300
           ++I GTTRD +  ++  EG      DTAG+R    I   +E+  I RT   VE AD
Sbjct: 206 SNIAGTTRDAVDTEIVHEGTEYVFIDTAGLRRKSKIKEELERYSIIRTVTAVERAD 261



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 7/91 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIR 278
           + I+G  N GKS+LFN LA   ++IV D PG TRD +  D   LD+   L+   DT GI 
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGDTISIVKDTPGVTRDRIYADCTWLDMNFTLI---DTGGIE 62

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI 308
            ++ DI+  +  ++  + +  AD+I+ + ++
Sbjct: 63  PDSSDIILSQMREQAEIAIATADVIIFIVDV 93


>gi|256847158|ref|ZP_05552604.1| ribosome-associated GTPase EngA [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715822|gb|EEU30797.1| ribosome-associated GTPase EngA [Lactobacillus coleohominis
           101-4-CHN]
          Length = 437

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 21/156 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 7   VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYTHAEWLGKNFNLIDTGGIDMSD 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK------------- 328
             +  +  ++  + ++ AD+I+L+ ++ +    +  K    ++   K             
Sbjct: 67  QPLTTQIREQAEVAIDEADVIVLVVDVQNGITDADEKVAQLLYRSNKPVVLAVNKVDNPE 126

Query: 329 --SDLYSTYT----EEYDHLISSFTGEGLEELINKI 358
             SD+Y  Y+    E Y   +SS  G GL +L++ +
Sbjct: 127 RRSDIYDFYSLGLGEPYP--VSSVHGIGLGDLLDAV 160



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  +   IV+DI GTTRD +      +     + DTAGI++   +
Sbjct: 180 LIGRPNVGKSSLVNAILGQQRVIVSDIAGTTRDAINTQFVADHRKFTMVDTAGIKKKGKL 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E+  + R+   ++++D++L++
Sbjct: 240 YENTERYALMRSMKAIDDSDVVLVV 264


>gi|149002004|ref|ZP_01826958.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS69]
 gi|147759813|gb|EDK66803.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS69]
          Length = 353

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 93  KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 152

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  IN+++ I                      
Sbjct: 153 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI---------------------- 188

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372
            EYD  I+ F    G+G+  ++NK  ++             +  +F+ LP++
Sbjct: 189 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 240


>gi|12045187|ref|NP_072998.1| GTP-binding protein EngA [Mycoplasma genitalium G37]
 gi|255660444|ref|ZP_05405853.1| GTP-binding protein EngA [Mycoplasma genitalium G37]
 gi|1723150|sp|P47571|DER_MYCGE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|3844909|gb|AAC71553.1| GTP-binding protein engA [Mycoplasma genitalium G37]
 gi|166078673|gb|ABY79291.1| GTP-binding protein engA [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 448

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 10/126 (7%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           L D+L  +N +  + +   L +I     +  ++G  N GKSSL N L K++  +V++  G
Sbjct: 157 LMDLLVKQNQLLPNENNDDLAKI-----RFCVIGKPNVGKSSLINQLVKQNRVLVSNESG 211

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEIN 309
           TTRD + + L + G    + DTAGI+    I   +E     +T L +  +++ILL+  ++
Sbjct: 212 TTRDAIDVPLKVNGEKFLLIDTAGIKRKGKINMGIETASYIKTKLAIARSNVILLM--VD 269

Query: 310 SKKEIS 315
             K IS
Sbjct: 270 GSKPIS 275



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 28/37 (75%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + + I+G +N GKS+LFN L +K +AIV+D P TTRD
Sbjct: 2   FTVAIIGRTNVGKSTLFNRLIQKPMAIVSDTPNTTRD 38


>gi|329766866|ref|ZP_08258394.1| GTP-binding protein engA [Gemella haemolysans M341]
 gi|328837591|gb|EGF87216.1| GTP-binding protein engA [Gemella haemolysans M341]
          Length = 435

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL N +  ++  I +DI GTTRD +  D    G    + DTAGIR+   +
Sbjct: 179 LIGRPNVGKSSLINTILGEERVIASDIAGTTRDAIDTDFKHNGDEYVVIDTAGIRKRGKV 238

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R+   +E +D++L++
Sbjct: 239 YESCEKYSVLRSLKAIERSDVVLVV 263



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +    ++IV D+ G TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGIELED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              +K+   +  L ++ AD+I+ L
Sbjct: 66  TPFQKQIRAQAELAIDEADVIIFL 89


>gi|313903264|ref|ZP_07836656.1| GTP-binding protein Era [Thermaerobacter subterraneus DSM 13965]
 gi|313466352|gb|EFR61874.1| GTP-binding protein Era [Thermaerobacter subterraneus DSM 13965]
          Length = 345

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 23/198 (11%)

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           D+        +H + G   +  R+G+ + ++G  N GKS+L N L  + +AI++D P TT
Sbjct: 31  DLPGAPGGPGAHPAPGARAQGFRSGF-VALIGRPNVGKSTLLNQLIGRKIAIMSDKPQTT 89

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI---KRTFLEVENADLILLLKEINSK 311
           R  +   L+  G  +   DT GI +   ++ +  +   +RT  EVE    ++   +    
Sbjct: 90  RTRILGVLNRPGAQLVFVDTPGIHKPQHLLGEHMVQIARRTLQEVEAVCWLVEAPDREPG 149

Query: 312 KEISF----------PK-----NIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLE 352
               F          P+      ID +  G    + + + E       H +S+  G G+ 
Sbjct: 150 PGDRFIAEQLAGLKTPRVLVVNKIDQVAPGEVPAIAARFAELGTFAAVHPVSALHGVGVA 209

Query: 353 ELINKIKSILSNKFKKLP 370
           EL+  ++ +L    +  P
Sbjct: 210 ELVGTLEGLLPEGPRFFP 227


>gi|229096095|ref|ZP_04227068.1| GTP-binding protein engA [Bacillus cereus Rock3-29]
 gi|229102207|ref|ZP_04232916.1| GTP-binding protein engA [Bacillus cereus Rock3-28]
 gi|229115051|ref|ZP_04244461.1| GTP-binding protein engA [Bacillus cereus Rock1-3]
 gi|228668191|gb|EEL23623.1| GTP-binding protein engA [Bacillus cereus Rock1-3]
 gi|228681108|gb|EEL35276.1| GTP-binding protein engA [Bacillus cereus Rock3-28]
 gi|228687055|gb|EEL40960.1| GTP-binding protein engA [Bacillus cereus Rock3-29]
          Length = 436

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NAL  ++  IV++I GTTRD +      +G    I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D++L++
Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +  ++  + ++ AD+I+ +
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFM 89


>gi|314933657|ref|ZP_07841022.1| ribosome-associated GTPase EngA [Staphylococcus caprae C87]
 gi|313653807|gb|EFS17564.1| ribosome-associated GTPase EngA [Staphylococcus caprae C87]
          Length = 436

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD +  +   EG    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSYEGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + ++ AD+I+ +
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFM 89


>gi|71902945|ref|YP_279748.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS6180]
 gi|123640474|sp|Q48V63|DER_STRPM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|71802040|gb|AAX71393.1| GTP-binding protein [Streptococcus pyogenes MGAS6180]
          Length = 436

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           I    EK  + R    ++ +D++L++  IN+++ I                       EY
Sbjct: 239 IYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  +I
Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTI 299



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAQIAMEEADVIVFV 89


>gi|241889489|ref|ZP_04776788.1| ribosome-associated GTPase EngA [Gemella haemolysans ATCC 10379]
 gi|241863796|gb|EER68179.1| ribosome-associated GTPase EngA [Gemella haemolysans ATCC 10379]
          Length = 435

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL N +  ++  I +DI GTTRD +  D    G    + DTAGIR+   +
Sbjct: 179 LIGRPNVGKSSLINTILGEERVIASDIAGTTRDAIDTDFKHNGDEYVVIDTAGIRKRGKV 238

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R+   +E +D++L++
Sbjct: 239 YESCEKYSVLRSLKAIERSDVVLVV 263



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +    ++IV D+ G TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGIELED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              +K+   +  L ++ AD+I+ L
Sbjct: 66  TPFQKQIRAQAELAIDEADVIIFL 89


>gi|227893492|ref|ZP_04011297.1| GTP-binding protein EngA [Lactobacillus ultunensis DSM 16047]
 gi|227864717|gb|EEJ72138.1| GTP-binding protein EngA [Lactobacillus ultunensis DSM 16047]
          Length = 435

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 29/179 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSS+ N L  +D  IV +  GTTRD +       G   K+ DTAGIR    +
Sbjct: 179 VIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTKNGVKYKVVDTAGIRRRGKV 238

Query: 284 VEKE---GIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDLY 332
            EK     + R    +E +D++LL+ + ++      K +   +       I +  K DL 
Sbjct: 239 YEKTEKYSVLRAMSAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLL 298

Query: 333 ---STYTEEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              ST  +E++                 +S+ TG+ L+++   +K +  N+ +++  S+
Sbjct: 299 KKNSTSAKEFEREIRAEFQYLDYAPILFVSAKTGQRLDQIPTLVKEVYDNQNQRIQSSV 357



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD      +  G+   + DT GI    
Sbjct: 6   VAIVGRPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
             +E+E   +  + +E AD+I++L  +
Sbjct: 66  GKIEEEIRAQAEIAIEEADVIVMLTSV 92


>gi|300871622|ref|YP_003786495.1| GTP-binding protein [Brachyspira pilosicoli 95/1000]
 gi|300689323|gb|ADK31994.1| GTP-binding protein [Brachyspira pilosicoli 95/1000]
          Length = 404

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 4/94 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTA 275
           N   I I G  N GKSS+ NA+A +DVAIV+D  GTT D +   I+++  G    I DTA
Sbjct: 20  NRTHIAIFGRRNVGKSSIINAIANQDVAIVSDTAGTTTDPVKKAIEINKIGACT-IVDTA 78

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           G  +  ++ E   IKRT   +E+AD+ LL+ + N
Sbjct: 79  GFDDEGELGELR-IKRTKKIMESADIALLVFDAN 111


>gi|260892064|ref|YP_003238161.1| GTP-binding protein Era [Ammonifex degensii KC4]
 gi|260864205|gb|ACX51311.1| GTP-binding protein Era [Ammonifex degensii KC4]
          Length = 300

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L  + VAIV+D P TTR  +   L L    +   DT G
Sbjct: 7   RSGF-VSVVGRPNVGKSTLINHLVGQKVAIVSDKPQTTRHRILGVLTLPEAQIVFVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFP-----KN 319
           I +    + +  +      ++  DL+L L E  S             K+   P       
Sbjct: 66  IHKPRHRLGEYLVTLALGALKGVDLVLFLSEATSPPGAGDYFILEQLKKAEVPVILVLNK 125

Query: 320 IDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           ID I       L   + +E+D      +S+ TGE LE L+ +I   L    +  P  + +
Sbjct: 126 IDLISKPRLLPLIDLWRQEHDFAAIVPVSALTGENLERLVQEIVEHLPPGPQYFPPEVTT 185

Query: 376 HKRHLYHLSQTVR 388
            +   + +++ +R
Sbjct: 186 SQPPEFVVAELIR 198


>gi|229543990|ref|ZP_04433049.1| small GTP-binding protein [Bacillus coagulans 36D1]
 gi|229325129|gb|EEN90805.1| small GTP-binding protein [Bacillus coagulans 36D1]
          Length = 436

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K   +G  N GKSSLFNA+  ++  IV+DI GTTRD +      E     + DTAG+R+ 
Sbjct: 177 KFCFIGRPNVGKSSLFNAILGEERVIVSDIEGTTRDAVDTVYTYEDQTYVMIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E +D++ ++
Sbjct: 237 GKVYENTEKYSVLRALRAIERSDVVCVV 264



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYSPAEWLTHEFNVIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++  ++  + ++ AD+I+ +
Sbjct: 66  EPFLEQIRQQAEIAIQEADVIIFI 89


>gi|157827640|ref|YP_001496704.1| GTP-binding protein EngA [Rickettsia bellii OSU 85-389]
 gi|166225850|sp|A8GXR7|DER_RICB8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157802944|gb|ABV79667.1| GTP-binding protein EngA [Rickettsia bellii OSU 85-389]
          Length = 452

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 44/82 (53%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G  E  D 
Sbjct: 13  LVGRPNVGKSTLFNRLSMRKKAIVHDLPGVTRDRKYTDGRIGSFEFSLIDTPGFEENPDS 72

Query: 284 VEKEGIKRTFLEVENADLILLL 305
             K  +++T   +  ADLI  +
Sbjct: 73  FGKRLMEQTTKAINEADLICFM 94



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +G  +K+ DTAG+R+ 
Sbjct: 186 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKGNHIKLIDTAGLRKK 245

Query: 281 DDIVE 285
             I E
Sbjct: 246 ATITE 250


>gi|28378534|ref|NP_785426.1| GTP-binding protein EngA [Lactobacillus plantarum WCFS1]
 gi|254556748|ref|YP_003063165.1| GTP-binding protein EngA [Lactobacillus plantarum JDM1]
 gi|300767479|ref|ZP_07077391.1| ribosome-associated GTPase EngA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308180691|ref|YP_003924819.1| GTP-binding protein EngA [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|37999659|sp|Q88VZ6|DER_LACPL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|28271370|emb|CAD64275.1| GTP-binding protein [Lactobacillus plantarum WCFS1]
 gi|254045675|gb|ACT62468.1| GTP-binding protein EngA [Lactobacillus plantarum JDM1]
 gi|300495298|gb|EFK30454.1| ribosome-associated GTPase EngA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308046182|gb|ADN98725.1| GTP-binding protein EngA [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 436

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282
           ++G  N GKSS+ NAL  +D  IV+D+ GTTRD +     D +G    + DTAGIR+   
Sbjct: 179 LIGRPNVGKSSIVNALLGEDRVIVSDVAGTTRDAIDTKFTDQDGDRFVMVDTAGIRKKGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLL 305
           +    E+  + R    ++N+D+ L +
Sbjct: 239 VYENTERYSVMRALKAIDNSDVALFV 264



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A   ++IV D PG TRD +  + +  G    + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYANSEWLGQEFSLIDTGGIDIED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
               K+  ++  + ++ AD+I+ L  I
Sbjct: 66  APFIKQITQQAEIAIDEADVIIYLVSI 92


>gi|99080832|ref|YP_612986.1| GTP-binding protein EngA [Ruegeria sp. TM1040]
 gi|123077693|sp|Q1GHZ2|DER_SILST RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|99037112|gb|ABF63724.1| Small GTP-binding protein domain [Ruegeria sp. TM1040]
          Length = 492

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 19/168 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + D+AG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDSAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ +E    + T   VE AD+ L L +  +          EI   K+   I    KS+
Sbjct: 63  ATDNSLEGRMRRLTERAVEMADVCLFLIDARAGVTPTDEVFAEILRKKSAHVILAANKSE 122

Query: 331 LYST---YTEEYDH------LISSFTGEGLEELINKIKSILSNKFKKL 369
             +      E Y         +S   GEGL +L +++  + S KF+KL
Sbjct: 123 GSAADAGVLEAYGLGLGEPIRMSGEHGEGLNDLYSELLPV-SEKFEKL 169



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 40/66 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D  G  ++I DTAG+R+ 
Sbjct: 208 QVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLKIDWSGTPMRIFDTAGMRKK 267

Query: 281 DDIVEK 286
             + EK
Sbjct: 268 AKVQEK 273


>gi|170017042|ref|YP_001727961.1| GTP-binding protein engA [Leuconostoc citreum KM20]
 gi|238688961|sp|B1MYB5|DER_LEUCK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169803899|gb|ACA82517.1| GTP-binding protein engA [Leuconostoc citreum KM20]
          Length = 437

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + +AIV D PG TRD L    +   Y  ++ DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRMAGERIAIVEDKPGVTRDRLYAPAEWLNYEFRMIDTGGIELGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    E   +  L ++ AD+I+++
Sbjct: 66  EPFLAEIRAQVELAIDEADVIVMV 89



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282
           I+G  N GKSS+ NA+  +D  IV+DI GTTRD +    +  EG    + DTAG+R+   
Sbjct: 180 IIGRPNVGKSSIVNAMLGEDRVIVSDIEGTTRDAIDSRFVTAEGDEFIMVDTAGMRKRGK 239

Query: 283 I---VEKEGIKRTFLEVENADLILLL 305
           +    EK  + R    ++N+++IL++
Sbjct: 240 VYENTEKYSVMRALKAIDNSNVILMV 265


>gi|51891490|ref|YP_074181.1| putative GTPase [Symbiobacterium thermophilum IAM 14863]
 gi|51855179|dbj|BAD39337.1| putative GTPase [Symbiobacterium thermophilum IAM 14863]
          Length = 413

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 4/85 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279
           I   G  NAGKSSL NAL+++ V++V+ +PGTT D +   ++L   G +V I DTAGI +
Sbjct: 14  IAFFGRRNAGKSSLINALSRQAVSLVSPVPGTTTDPVRRPMELHPLGPVVLI-DTAGIDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILL 304
             D+  +  ++R+F  ++  DL +L
Sbjct: 73  EGDL-GRLRVERSFQVLDQTDLAVL 96


>gi|83954198|ref|ZP_00962918.1| GTP-binding protein EngA [Sulfitobacter sp. NAS-14.1]
 gi|83841235|gb|EAP80405.1| GTP-binding protein EngA [Sulfitobacter sp. NAS-14.1]
          Length = 491

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLADLRFTVVDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TDD ++    + T   V+ AD+ L +
Sbjct: 63  VTDDSLQGRMRRLTERAVDMADICLFM 89



 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++  D     ++I DTAG+R+ 
Sbjct: 205 QVAVVGRPNAGKSTLINQIMGEDRLLTGPEAGITRDAISLQTDWFDVPMRIFDTAGMRKR 264

Query: 281 DDIVEK 286
             + EK
Sbjct: 265 AKVQEK 270


>gi|83943023|ref|ZP_00955483.1| GTP-binding protein EngA [Sulfitobacter sp. EE-36]
 gi|83846031|gb|EAP83908.1| GTP-binding protein EngA [Sulfitobacter sp. EE-36]
          Length = 491

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLADLRFTVVDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TDD ++    + T   V+ AD+ L +
Sbjct: 63  VTDDSLQGRMRRLTERAVDMADICLFM 89



 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++  D     ++I DTAG+R+ 
Sbjct: 205 QVAVVGRPNAGKSTLINQIMGEDRLLTGPEAGITRDAISLQTDWFDVPMRIFDTAGMRKR 264

Query: 281 DDIVEK 286
             + EK
Sbjct: 265 AKVQEK 270


>gi|332523593|ref|ZP_08399845.1| ribosome biogenesis GTPase Der [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314857|gb|EGJ27842.1| ribosome biogenesis GTPase Der [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 436

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 31/151 (20%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAG 276
           N  +  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG
Sbjct: 173 NIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTSFTDSDGQEFTMIDTAG 232

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYS 333
           +R++  I    EK  + R    ++ +D++L++  IN+++ I                   
Sbjct: 233 MRKSGKIYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI------------------- 271

Query: 334 TYTEEYDHLISSF---TGEGLEELINKIKSI 361
               EYD  I+ F    G+G+  ++NK  +I
Sbjct: 272 ---REYDKRIAGFAHEAGKGMIIVVNKWDTI 299



 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + +
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAQIAMDEADVIVFV 89


>gi|331265908|ref|YP_004325538.1| phosphoglycerate dehydrogenase, GTP-binding protein [Streptococcus
           oralis Uo5]
 gi|326682580|emb|CBZ00197.1| phosphoglycerate dehydrogenase, GTP-binding protein [Streptococcus
           oralis Uo5]
          Length = 436

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 33/179 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
            EYD  I+ F  E  + +I     I+ NK+  L     + K+    + +  +YL  A +
Sbjct: 272 REYDKRIAGFAHEAGKGMI-----IVVNKWDTLEKDNHTMKKWEEDIREQFQYLPYAPI 325



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFV 89


>gi|255656611|ref|ZP_05402020.1| GTP-binding protein EngA [Clostridium difficile QCD-23m63]
 gi|296449935|ref|ZP_06891699.1| ribosome-associated GTPase EngA [Clostridium difficile NAP08]
 gi|296878317|ref|ZP_06902325.1| ribosome-associated GTPase EngA [Clostridium difficile NAP07]
 gi|296261205|gb|EFH08036.1| ribosome-associated GTPase EngA [Clostridium difficile NAP08]
 gi|296430615|gb|EFH16454.1| ribosome-associated GTPase EngA [Clostridium difficile NAP07]
          Length = 441

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I G  NAGKSS+ N +  ++  IV+ I GTTRD +    +  G    + DTAG+R  
Sbjct: 180 RVAITGKPNAGKSSILNKILGEERVIVSPIAGTTRDAIDTYFEKNGQKFLLIDTAGLRRK 239

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +EK  + R    V+ AD++L++
Sbjct: 240 SKIYETIEKYSVIRAMSAVDRADVVLIV 267



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS++FN  A K ++IV + PG TRD +  +++       + DT GI  ++
Sbjct: 8   VAVVGRPNVGKSTIFNKFAGKRISIVENTPGVTRDRIFAEVEWLDKYFTLVDTGGIEPDS 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+  +   +  L ++ + +IL +
Sbjct: 68  EDIILSQMRNQAMLAMDMSHVILFI 92


>gi|317495375|ref|ZP_07953744.1| ribosome-associated GTPase EngA [Gemella moribillum M424]
 gi|316914434|gb|EFV35911.1| ribosome-associated GTPase EngA [Gemella moribillum M424]
          Length = 435

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL N +  ++  I +DI GTTRD +  D    G    + DTAGIR+   +
Sbjct: 179 LIGRPNVGKSSLINTILGEERVIASDIAGTTRDAIDTDFKHNGDEYVVIDTAGIRKRGKV 238

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R+   +E +D++L++
Sbjct: 239 YEACEKYSVLRSLKAIERSDVVLVV 263



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +    ++IV D+ G TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGIELED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              +K+   +  L ++ AD+I+ L
Sbjct: 66  TPFQKQIRAQAELAIDEADVIIFL 89


>gi|254385852|ref|ZP_05001171.1| GTP-binding protein engA [Streptomyces sp. Mg1]
 gi|194344716|gb|EDX25682.1| GTP-binding protein engA [Streptomyces sp. Mg1]
          Length = 486

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +I ++G  N GKSSL N +AK+D  +V ++ GTTRD +   ++L G   K  DTAGIR+
Sbjct: 222 RIALIGRPNVGKSSLLNKVAKEDRVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRK 280



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G  +  
Sbjct: 47  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 106

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     +    +E AD ++ +
Sbjct: 107 LGIDASVAAQAEYAIEAADAVVFV 130


>gi|293365923|ref|ZP_06612626.1| ribosome-associated GTPase EngA [Streptococcus oralis ATCC 35037]
 gi|307702327|ref|ZP_07639285.1| small GTP-binding domain protein [Streptococcus oralis ATCC 35037]
 gi|315613624|ref|ZP_07888531.1| ribosome-associated GTPase EngA [Streptococcus sanguinis ATCC
           49296]
 gi|291315601|gb|EFE56051.1| ribosome-associated GTPase EngA [Streptococcus oralis ATCC 35037]
 gi|307624130|gb|EFO03109.1| small GTP-binding domain protein [Streptococcus oralis ATCC 35037]
 gi|315314315|gb|EFU62360.1| ribosome-associated GTPase EngA [Streptococcus sanguinis ATCC
           49296]
          Length = 436

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 33/179 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
            EYD  I+ F  E  + +I     I+ NK+  L     + K+    + +  +YL  A +
Sbjct: 272 REYDKRIAGFAHEAGKGMI-----IVVNKWDTLEKDNHTMKKWEEDIREQFQYLPYAPI 325



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFV 89


>gi|300361577|ref|ZP_07057754.1| ribosome-associated GTPase EngA [Lactobacillus gasseri JV-V03]
 gi|300354196|gb|EFJ70067.1| ribosome-associated GTPase EngA [Lactobacillus gasseri JV-V03]
          Length = 435

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  +   IV++I GTTRD +      +G    I DTAGIR    +
Sbjct: 179 VIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKV 238

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D+ LL+
Sbjct: 239 YEKTEKYSVLRAISAIEESDITLLV 263



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D  G TRD +    +  G+   + DT GI    
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLDS 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
             +E++   +  + ++ AD+I++L ++  
Sbjct: 66  GEIEEQIKAQAEIAIDEADVIVMLGDVTQ 94


>gi|332652574|ref|ZP_08418319.1| GTP-binding protein Era [Ruminococcaceae bacterium D16]
 gi|332517720|gb|EGJ47323.1| GTP-binding protein Era [Ruminococcaceae bacterium D16]
          Length = 298

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 23/197 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI ++G  I + G  N GKS+L NAL  + VAIVT+ P TTR+ +T  L+         D
Sbjct: 2   EIKKSGI-ITLCGRPNVGKSTLTNALVGEKVAIVTNKPQTTRNRITAILNRGESQFVFVD 60

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNID 321
           T G+ +    +    +      V + D I+LL E            I+  K +  P  + 
Sbjct: 61  TPGLHKARTRLGDYMVNVVKESVADVDGIMLLVEPIPNIGAPEQQLIDRIKTLGCPSVLV 120

Query: 322 FIFIGTKS------DLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371
              + T        ++   YT+ +D      IS+ TGEG++EL+N ++  L N  +  P 
Sbjct: 121 INKVDTLEQKEKLLEVIQVYTQAHDFTAVVPISAKTGEGVDELLNVLEGFLPNGPQLFPE 180

Query: 372 SIPSHKRHLYHLSQTVR 388
            + S +     +++ +R
Sbjct: 181 GMVSDQPERQMMAEILR 197


>gi|302533632|ref|ZP_07285974.1| LOW QUALITY PROTEIN: ribosome-associated GTPase EngA [Streptomyces
           sp. C]
 gi|302442527|gb|EFL14343.1| LOW QUALITY PROTEIN: ribosome-associated GTPase EngA [Streptomyces
           sp. C]
          Length = 496

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 41/67 (61%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G  I    +I ++G  N GKSSL N +A++D  +V ++ GTTRD +   ++L G   K  
Sbjct: 214 GAAIGGPRRIALIGRPNVGKSSLLNKVAREDRVVVNELAGTTRDPVDELIELGGVTWKFV 273

Query: 273 DTAGIRE 279
           DTAGIR+
Sbjct: 274 DTAGIRK 280



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G  +  
Sbjct: 47  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 106

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     +    +E AD ++ +
Sbjct: 107 LGIDASVAAQAEYAIETADAVVFV 130


>gi|83594414|ref|YP_428166.1| GTP-binding protein EngA [Rhodospirillum rubrum ATCC 11170]
 gi|83577328|gb|ABC23879.1| Small GTP-binding protein domain [Rhodospirillum rubrum ATCC 11170]
          Length = 500

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 4/113 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  + +AIV D+PG TRD       L   + ++ DTAG+ E
Sbjct: 2   FTVAIIGRPNVGKSTLFNRLCGRRLAIVHDMPGVTRDRREGKASLADLVFRVVDTAGLEE 61

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
              +++E    ++T   +  A + L+L  I+S+  ++ P +  F  I  K+ +
Sbjct: 62  AGPEVLEGRMRQQTDRALSEAHVALML--IDSRAGVT-PLDAHFAEILRKAPI 111



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ I+G  N GKS+L N L   D  +     G TRD + +D +  G   ++ DTAG+R  
Sbjct: 234 QMAIIGRPNTGKSTLINRLIGDDRLVTGPEAGVTRDAIEVDWEWGGRRFRLVDTAGLRRK 293

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              ++ +EK  +  T   +  A++ +L+ + N
Sbjct: 294 ARVENSLEKLMVADTLNAIRLAEVCVLMLDAN 325


>gi|311087969|gb|ADP68048.1| GTP-binding protein EngA [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 441

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 19/166 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           IV++G +N GKS+LFN L K   A+V + PG TRD       L+    + + DTAG+   
Sbjct: 5   IVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKIILIDTAGLDIK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------------KEIN--SKKEISFPKNIDFI 323
            + +EK+   +T + ++ A LIL L               K I    KK I     ID I
Sbjct: 65  LNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVINKIDGI 124

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK-IKSILSNKFKK 368
              +K + + +   E    IS+   +G+  LIN+ +   +S KFKK
Sbjct: 125 NEASKINEFYSLGFEKIQKISASHNQGINTLINRYLIPWISEKFKK 170



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIR 278
           K+  +G  N GKS+L N + K++  I ++ PGTT D ++  I  + E Y   + DTAG  
Sbjct: 188 KVAFIGRPNVGKSTLINGILKEERMITSNTPGTTLDSISTPIKYNYENYT--LIDTAGAS 245

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
           +    +   ++  I +T   +E +++ILL+
Sbjct: 246 KKKKKINDFQRFSIIKTLQTIEKSNVILLI 275


>gi|306824736|ref|ZP_07458080.1| ribosome-associated GTPase EngA [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432947|gb|EFM35919.1| ribosome-associated GTPase EngA [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 436

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 33/179 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
            EYD  I+ F  E  + +I     I+ NK+  L     + K+    + +  +YL  A +
Sbjct: 272 REYDKRIAGFAHEAGKGMI-----IVVNKWDTLEKDNHTMKKWEEDIREQFQYLPYAPI 325



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFV 89


>gi|297584434|ref|YP_003700214.1| ribosome-associated GTPase EngA [Bacillus selenitireducens MLS10]
 gi|297142891|gb|ADH99648.1| ribosome-associated GTPase EngA [Bacillus selenitireducens MLS10]
          Length = 446

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSS+ NA+  ++  IV+DI GTTRD +      +G    + DTAG+R+ 
Sbjct: 185 RMSLIGRPNVGKSSMVNAILGEERVIVSDIAGTTRDAIDTSFTKDGKDYVVIDTAGMRKR 244

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E +D++L++
Sbjct: 245 GKVYETTEKYSVLRALKAIERSDVVLVV 272



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + ++IV D PG TRD +    +   +   I DT GI  +D
Sbjct: 14  LAIVGRPNVGKSTLFNRVVGERISIVEDKPGVTRDRIYSSAEWLTHEFFIIDTGGIEISD 73

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + + ++   +  L ++ AD+I  +
Sbjct: 74  EPLLEQMRYQAELAIDEADVICFV 97


>gi|255262204|ref|ZP_05341546.1| ribosome-associated GTPase EngA [Thalassiobium sp. R2A62]
 gi|255104539|gb|EET47213.1| ribosome-associated GTPase EngA [Thalassiobium sp. R2A62]
          Length = 495

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLADLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TD+ ++    K T   V+ AD+ L +
Sbjct: 63  ATDESLQGRMRKLTERAVDMADVCLFM 89



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 40/66 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  NAGKS+L N +  +D  +     G TRD +++  + +G  V+I DTAG+R+ 
Sbjct: 207 QIAVVGRPNAGKSTLINQILGEDRLLTGPEAGITRDAISLRTEWDGTHVRIFDTAGMRKR 266

Query: 281 DDIVEK 286
             + +K
Sbjct: 267 AKVQDK 272


>gi|257784575|ref|YP_003179792.1| GTP-binding proten HflX [Atopobium parvulum DSM 20469]
 gi|257473082|gb|ACV51201.1| GTP-binding proten HflX [Atopobium parvulum DSM 20469]
          Length = 437

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 31/186 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + + ++G++NAGKS+L N L   DV     +   +  TTR  L++D   EG  + ++DT 
Sbjct: 210 FSVSLVGYTNAGKSTLLNQLTGADVYAKDELFATLDPTTR-ALSLD---EGRKIVLTDTV 265

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNI---------DFI 323
           G  +       E  K T +E + ADL+LL+ +   K   KEI+  ++I         D +
Sbjct: 266 GFIQKLPTNLIESFKSTLIEAQEADLLLLVADATDKNLSKEIAVVRSILKDIEADKSDQV 325

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            +  K DL S   +E   L         IS+  G G+  L++KI+ I S   K +   IP
Sbjct: 326 LVLNKVDLLS--EQELQMLKALYPDAVFISAQKGTGINGLLHKIQEIASTGDKVVSALIP 383

Query: 375 SHKRHL 380
            +K  L
Sbjct: 384 FNKGAL 389


>gi|254492694|ref|ZP_05105865.1| putative GTPase [Methylophaga thiooxidans DMS010]
 gi|224462215|gb|EEF78493.1| putative GTPase [Methylophaga thiooxydans DMS010]
          Length = 468

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  N GKS+L N L  ++  +  D PGTTRD + I  + +G    + DTAG+R  
Sbjct: 184 RLAVLGRPNVGKSTLINRLLGEERVVAFDEPGTTRDSIHIPFEKDGVNYTLIDTAGVRRR 243

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   +E+A++ LL+
Sbjct: 244 SKVSEKLEKFSVLKTLQALEDANVALLV 271



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   A+V D  G TRD +   +  E     + DT G+ +  
Sbjct: 5   IALVGRPNVGKSTIFNRLTRSRDALVADYAGLTRDRIYGTVREENLDFILIDTGGLTDQT 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI-----SFPKNIDFIFIGTK--- 328
           D +     K+  L ++ ADL+L + +     + S  ++     S  K +  +   T+   
Sbjct: 65  DNMSDLMRKQAKLAIDEADLVLFIVDGRAGLMPSDTDVAQQLRSDGKPVRLVINKTEGEQ 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                +D YS    E   +IS+  G G  EL+ +IK  L  
Sbjct: 125 REMVAADFYSLGLGE-PQVISATQGRGFTELLEEIKVCLPQ 164


>gi|42519017|ref|NP_964947.1| GTP-binding protein EngA [Lactobacillus johnsonii NCC 533]
 gi|227889871|ref|ZP_04007676.1| GTP-binding protein EngA [Lactobacillus johnsonii ATCC 33200]
 gi|268319593|ref|YP_003293249.1| GTP-binding protein engA [Lactobacillus johnsonii FI9785]
 gi|81832245|sp|Q74JL6|DER_LACJO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|41583304|gb|AAS08913.1| probable GTP-binding protein EngA [Lactobacillus johnsonii NCC 533]
 gi|227849735|gb|EEJ59821.1| GTP-binding protein EngA [Lactobacillus johnsonii ATCC 33200]
 gi|262397968|emb|CAX66982.1| GTP-binding protein engA [Lactobacillus johnsonii FI9785]
          Length = 435

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  +   IV++I GTTRD +      +G    I DTAGIR    +
Sbjct: 179 VIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKV 238

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D+ LL+
Sbjct: 239 YEKTEKYSVLRAISAIEESDITLLV 263



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D  G TRD +    +  G+   + DT GI    
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLDS 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
             +E++   +  + ++ AD+I++L ++  
Sbjct: 66  GEIEEQIKAQAEIAIDEADVIVMLGDVTQ 94


>gi|126700246|ref|YP_001089143.1| GTP-binding protein EngA [Clostridium difficile 630]
 gi|254976225|ref|ZP_05272697.1| GTP-binding protein EngA [Clostridium difficile QCD-66c26]
 gi|255093612|ref|ZP_05323090.1| GTP-binding protein EngA [Clostridium difficile CIP 107932]
 gi|255101800|ref|ZP_05330777.1| GTP-binding protein EngA [Clostridium difficile QCD-63q42]
 gi|255307668|ref|ZP_05351839.1| GTP-binding protein EngA [Clostridium difficile ATCC 43255]
 gi|255315360|ref|ZP_05356943.1| GTP-binding protein EngA [Clostridium difficile QCD-76w55]
 gi|255518025|ref|ZP_05385701.1| GTP-binding protein EngA [Clostridium difficile QCD-97b34]
 gi|255651141|ref|ZP_05398043.1| GTP-binding protein EngA [Clostridium difficile QCD-37x79]
 gi|260684207|ref|YP_003215492.1| GTP-binding protein EngA [Clostridium difficile CD196]
 gi|260687866|ref|YP_003219000.1| GTP-binding protein EngA [Clostridium difficile R20291]
 gi|306520992|ref|ZP_07407339.1| GTP-binding protein EngA [Clostridium difficile QCD-32g58]
 gi|115251683|emb|CAJ69518.1| putative GTP-binding protein EngA [Clostridium difficile]
 gi|260210370|emb|CBA64741.1| putative GTP-binding protein [Clostridium difficile CD196]
 gi|260213883|emb|CBE05907.1| putative GTP-binding protein [Clostridium difficile R20291]
          Length = 441

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I G  NAGKSS+ N +  ++  IV+ I GTTRD +    +  G    + DTAG+R  
Sbjct: 180 RVAITGKPNAGKSSILNKILGEERVIVSPIAGTTRDAIDTYFEKNGQKFLLIDTAGLRRK 239

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +EK  + R    V+ AD++L++
Sbjct: 240 SKIYETIEKYSVIRAMSAVDRADVVLIV 267



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS++FN  A K ++IV + PG TRD +  +++       + DT GI  ++
Sbjct: 8   VAVVGRPNVGKSTIFNKFAGKRISIVENTPGVTRDRIFAEVEWLDKYFTLVDTGGIEPDS 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +DI+  +   +  L ++ + +IL +
Sbjct: 68  EDIILSQMRNQAMLAMDMSHVILFI 92


>gi|27379163|ref|NP_770692.1| GTP-binding protein EngA [Bradyrhizobium japonicum USDA 110]
 gi|37999663|sp|Q89MZ0|DER_BRAJA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|27352313|dbj|BAC49317.1| GTP-binding protein [Bradyrhizobium japonicum USDA 110]
          Length = 460

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 92/213 (43%), Gaps = 47/213 (22%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N L  ++  + +   GTTRD + ++++ +G   ++ DTAG+R  
Sbjct: 189 RVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTRDSIAVEINWKGREFRVFDTAGLRRR 248

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------FIFIGTKS 329
             I   +EK  +      V  A++++L+ +  ++ E    +  D         +    K 
Sbjct: 249 SRIEEKLEKLSVADALRAVRFAEVVVLMMDTQNRFEEQDLRIADLVEREGRALVLAANKW 308

Query: 330 DLYST--------YTEEYDHL-----------ISSFTGEGLEELINKIK----------- 359
           DL  T           + DH            +S   GEG++ L+  I+           
Sbjct: 309 DLMETKGGGAISGLRRDADHWLPQVKGVPIVAVSGLMGEGIDRLMQAIQDAYAVWNRRVS 368

Query: 360 -SILSNKFKKL-----PFSIPSHKRHLYHLSQT 386
            S L+  F++      P ++   +  L +++QT
Sbjct: 369 TSALNRWFEQAVQANPPPAVSGRRLKLNYITQT 401



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 35/60 (58%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I I+G  N GKS+LFN L  + +A+V D+PG TRD    +  L      I DTAG+ E
Sbjct: 3   FTIAIIGRPNVGKSTLFNRLVGQKLALVDDLPGVTRDRREGEARLGDLEFTIIDTAGLDE 62


>gi|315499685|ref|YP_004088488.1| ribosome-associated gtpase enga [Asticcacaulis excentricus CB 48]
 gi|315417697|gb|ADU14337.1| ribosome-associated GTPase EngA [Asticcacaulis excentricus CB 48]
          Length = 550

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 41/177 (23%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-------VLTIDLDLEGYLVKISD 273
           KI I+G  N GKS+LFN LA K +AIV D PG TRD       +  IDLDL        D
Sbjct: 26  KIAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYASGHIGDIDLDL-------ID 78

Query: 274 TAGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSKKEISFP-----------KNID 321
           TAG  +  D  +E    ++T   +E  D+ L + +    +E   P           K+  
Sbjct: 79  TAGFEDVADTSLEARMRQQTEKAIEECDVALFVMDA---REGVVPLDRIFADILRFKDKP 135

Query: 322 FIFIGTKSDLYSTYT-EEYDHL--------ISSFTGEGLEEL---INKIKSILSNKF 366
            I I  K++ ++ +   E  H+        +S+  GEG+ EL   + K + ++   F
Sbjct: 136 VILIANKAEGHAGFAGAEEAHVLGFGAPLHLSAEHGEGISELYEALEKYRQLIEGDF 192



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N L  +D  +     G TRD +++D + EG  +++ DTAG+R  
Sbjct: 208 RIAIIGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSISVDWEYEGRKIRLVDTAGLRRK 267

Query: 281 DDIVEK 286
             + EK
Sbjct: 268 ARVQEK 273


>gi|239616804|ref|YP_002940126.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505635|gb|ACR79122.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1]
          Length = 409

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 215 IIRNGYK--IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKI 271
           I   GY+  +   G  N GKSSL NAL  +DV+IV+D+PGTT D +   L++     V +
Sbjct: 2   IATGGYRKYLAFFGKRNVGKSSLINALVGQDVSIVSDVPGTTTDPVYKSLEIHPIGPVTV 61

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            DT G+ +  ++ E   +KR    +  AD+ +L+
Sbjct: 62  VDTPGVDDVGELGELR-VKRALKAMYKADIAILV 94


>gi|42525602|ref|NP_970700.1| GTP-binding protein EngA [Treponema denticola ATCC 35405]
 gi|41815613|gb|AAS10581.1| GTP-binding protein EngA [Treponema denticola ATCC 35405]
          Length = 476

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 29/181 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I I+G  N GKS+L N L     +I++++ GTTRD++  +   +     I DTAGIR  
Sbjct: 210 RITIVGKPNTGKSTLANYLTGSSASIISNVAGTTRDIVEGEFSYKNKKFLIQDTAGIRRK 269

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKS 329
            + ++ +E   + R    ++NAD++  L ++        KK I    N  +  IF+  K 
Sbjct: 270 AKVNEDIEYYSVVRAIKSMDNADIVFHLIDVQEGLTEQDKKIIVQATNRGLGVIFVLNKW 329

Query: 330 DLY----STYTEEYDHL--------------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           DL       + +E + +              IS+  G G++EL+N    +     KK+  
Sbjct: 330 DLMEQTKKAFKDEEERIKVMFGKMDYAPVLAISANEGTGIKELLNTAVKMFEQLNKKIET 389

Query: 372 S 372
           S
Sbjct: 390 S 390



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           I I+G  N GKS+LFN   +K  +I    PG TRD +     + G  V + DT G + T 
Sbjct: 33  IAIVGRPNVGKSTLFNRFLRKRRSITDPTPGVTRDPVEAQAIINGLPVMLVDTGGFKLTR 92

Query: 281 -----DDIVEKEGIKRTFLEVENADLILLL 305
                +D +++  +++T   ++ AD ILLL
Sbjct: 93  SGDAFEDTIDELVMEKTISTLKKADRILLL 122


>gi|229004376|ref|ZP_04162143.1| GTP-binding protein engA [Bacillus mycoides Rock1-4]
 gi|228756874|gb|EEM06152.1| GTP-binding protein engA [Bacillus mycoides Rock1-4]
          Length = 368

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NAL  ++  IV+++ GTTRD +      +G    I DTAG+R+   +
Sbjct: 112 LIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGKV 171

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D++L++
Sbjct: 172 YESTEKYSVLRALRAIERSDVVLVV 196


>gi|218889917|ref|YP_002438781.1| GTP-binding protein EngA [Pseudomonas aeruginosa LESB58]
 gi|226741143|sp|B7UWJ2|DER_PSEA8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|218770140|emb|CAW25902.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa LESB58]
          Length = 493

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  IV D  GTTRD + I  +       + DTAG
Sbjct: 195 KDGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERNEEKYTLIDTAG 254

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R    I   VEK  + +T   +++A++++ +
Sbjct: 255 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFV 286



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   AIV +  G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++ +  +++   +E AD +L L
Sbjct: 65  EGIDAKMAEQSLQAIEEADAVLFL 88


>gi|306827971|ref|ZP_07461238.1| ribosome-associated GTPase EngA [Streptococcus pyogenes ATCC 10782]
 gi|304429890|gb|EFM32932.1| ribosome-associated GTPase EngA [Streptococcus pyogenes ATCC 10782]
          Length = 436

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           I    EK  + R    ++ +D++L++  IN+++ I                       EY
Sbjct: 239 IYENTEKYSVMRAIRAIDRSDVVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  +I
Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTI 299



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAQIAMEEADVIVFV 89


>gi|108759687|ref|YP_631948.1| GTP-binding protein EngA [Myxococcus xanthus DK 1622]
 gi|122981004|sp|Q1D5X5|DER_MYXXD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|108463567|gb|ABF88752.1| GTP-binding protein EngA [Myxococcus xanthus DK 1622]
          Length = 459

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 35/194 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKS+L NA+ K+   + +D+ GTTRD +  +L  +   + ++DTAGIR  
Sbjct: 184 RLAIIGRPNVGKSTLVNAILKEKRVVASDVAGTTRDPVDSELTYKDRKLLLTDTAGIRRK 243

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             I   VE+  +      +E +D+ +LL +              ++  +    + +  K 
Sbjct: 244 KSIAQRVEQFSVVAALKVMERSDVAVLLMDATEPAVDQDAKLAGLAEERGRALVIVVNKW 303

Query: 330 DLYS-------TYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
           DL         TY E   H             S+ TG  +E++++ + + L+++F+   F
Sbjct: 304 DLVGADQRRQETYRESLKHSLKFVGYAPILFTSALTGSKVEKVVD-VATELADQFR---F 359

Query: 372 SIPSHK--RHLYHL 383
             P+ +  R L H+
Sbjct: 360 RAPTPQLNRLLDHM 373



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  + +A+V D PG TRD    D + EG      DT G    D
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGRRIALVQDEPGVTRDRHYADAEWEGRQFTFIDTGGFVPGD 64

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINS 310
            D + ++  ++  L V+  D+I+ + +  +
Sbjct: 65  EDQLLQQVREQAQLAVDECDVIVFVTDARA 94


>gi|329667448|gb|AEB93396.1| putative GTP-binding protein EngA [Lactobacillus johnsonii DPC
           6026]
          Length = 435

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  +   IV++I GTTRD +      +G    I DTAGIR    +
Sbjct: 179 VIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKV 238

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D+ LL+
Sbjct: 239 YEKTEKYSVLRAISAIEESDITLLV 263



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D  G TRD +    +  G+   + DT GI    
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLDS 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
             +E++   +  + ++ AD+I++L ++  
Sbjct: 66  GEIEEQIKAQAEIAIDEADVIVMLGDVTQ 94


>gi|295099666|emb|CBK88755.1| GTP-binding protein Era [Eubacterium cylindroides T2-87]
          Length = 300

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I I+G  NAGKS+L NAL K+ VAI++D P TTR+ +   L LE       DT G
Sbjct: 4   RSGF-IAIVGRPNAGKSTLMNALLKEKVAIMSDKPNTTRNNIAGILTLEDAQYVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLI 302
           I +    + +   K  +  +E+ D+I
Sbjct: 63  IHKPRQQLGRVLNKNAYTAMEDCDVI 88


>gi|224106171|ref|XP_002314070.1| predicted protein [Populus trichocarpa]
 gi|222850478|gb|EEE88025.1| predicted protein [Populus trichocarpa]
          Length = 489

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRE- 279
           I I+G  N GKSS+ NAL  +D  IV+ I GTTRD +  + +  +G    + DTAGIR  
Sbjct: 218 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFVGPDGQKFLLIDTAGIRRR 277

Query: 280 -----TDDIVEKEGIKRTFLEVENADLILLLKE 307
                +  + E   + R F  +  +D++ L+ E
Sbjct: 278 AAVASSGSVTEALSVNRAFRGIRRSDVVALVIE 310



 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 25/38 (65%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           K+ I+G  N GKS+LFN L   + AIV D PG TRD L
Sbjct: 9   KVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRL 46


>gi|217976948|ref|YP_002361095.1| GTP-binding protein EngA [Methylocella silvestris BL2]
 gi|217502324|gb|ACK49733.1| small GTP-binding protein [Methylocella silvestris BL2]
          Length = 467

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N +  +D  +    PG TRD + ID +  G  +K+ DTAG+R  
Sbjct: 197 RIAIIGRPNAGKSTLLNTIIGQDRLLTGPEPGLTRDTIGIDFEWGGRKIKMFDTAGLRRR 256

Query: 281 DDIVEK 286
             + +K
Sbjct: 257 AKVEDK 262



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 36/60 (60%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I I+G  N GKS+LFN L  K +A+V D PG TRD    +  L   + KI DTAG+ E
Sbjct: 2   FTIAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGEARLGDLVFKIIDTAGLEE 61


>gi|149923268|ref|ZP_01911678.1| GTP-binding protein EngA [Plesiocystis pacifica SIR-1]
 gi|149815865|gb|EDM75385.1| GTP-binding protein EngA [Plesiocystis pacifica SIR-1]
          Length = 487

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 49/240 (20%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I  G +I  +G  NAGKS+L N L ++   IV+D PGTTRD + +    +   + ++DTA
Sbjct: 199 IPPGTRIAFIGRPNAGKSTLVNTLLEEQRVIVSDTPGTTRDPVYLPFRYKDRDLVLTDTA 258

Query: 276 GIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIF 324
           G+R    I   +EK    ++   +E   +++L+ + +            ++F +    + 
Sbjct: 259 GLRRRKQIARAMEKLAAIKSIRTMERTQVVVLVIDASQGVTDQDQRLARMAFERGKGVVV 318

Query: 325 IGTKSDLYS----------TYTEEY------DHLI-SSFTGEG----------LEELINK 357
              K DL             YT+E        ++I SS  GEG          L EL++ 
Sbjct: 319 ALHKWDLIRRDGKLAKDTLAYTQEALGFLENPYIIKSSVIGEGRDEGKGRAFNLAELLDA 378

Query: 358 IKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
             S  +   K++P S         +  H   +Y  +++VR L  A+  E +  L +I+ N
Sbjct: 379 CLSTAAALGKRIPTSALNEELQGAVADHSPPMYR-AKSVR-LYFATQAENEPPLIVISAN 436



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 18/175 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  +  AIV D PG TRD L      EG    + DT G+  + 
Sbjct: 30  VAIIGRPNVGKSTLFNRLVGRREAIVEDRPGVTRDRLYGVASWEGRHFLVVDTGGVDPSL 89

Query: 282 DIVEKEGIK-RTFLEVENADLILLL---KEINSKKEISFPKNI-----DFIFIGTKSD-- 330
           D      I+ +  + +E ADLIL +   KE  +  +I     +       +    K+D  
Sbjct: 90  DTGLPGHIRSQAEVAMEEADLILFVVDAKEGATAVDIDIAAELRRSGKPVMLAANKADSP 149

Query: 331 ---LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
              L +    E      H +S+  G G+ +  + +   L    +  P  IP   R
Sbjct: 150 SRELAAAAMHELGLGEVHAVSAAHGRGVGDFCDALLERLPAATEAQPTPIPPGTR 204


>gi|270293072|ref|ZP_06199283.1| ribosome-associated GTPase EngA [Streptococcus sp. M143]
 gi|270279051|gb|EFA24897.1| ribosome-associated GTPase EngA [Streptococcus sp. M143]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 33/179 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
            EYD  I+ F  E  + +I     I+ NK+  L     + K+    + +  +YL  A +
Sbjct: 272 REYDKRIAGFAHEAGKGMI-----IVVNKWDTLEKDNHTMKKWEEDIREQFQYLPYAPI 325



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFV 89


>gi|223993343|ref|XP_002286355.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977670|gb|EED95996.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 465

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 8/81 (9%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K G++     ++ ILG  N GKS+L N+L  +D  I  D PG TRD +++ L  +   V+
Sbjct: 143 KDGDMSNRPLQLAILGRQNVGKSTLVNSLLGEDRVIAGDTPGLTRDSISVPLMWKDKHVQ 202

Query: 271 ISDTAGIRETDDIVEKEGIKR 291
           + DTAGIR         G+KR
Sbjct: 203 LVDTAGIR--------RGVKR 215


>gi|328881436|emb|CCA54675.1| GTP-binding protein EngA [Streptomyces venezuelae ATCC 10712]
          Length = 482

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           + G  +    +I ++G  N GKSSL N +A +D  +V ++ GTTRD +   ++L G   K
Sbjct: 211 RFGNTVGGPRRIALIGRPNVGKSSLLNKVANEDRVVVNELAGTTRDPVDELIELGGVTWK 270

Query: 271 ISDTAGIRE 279
             DTAGIR+
Sbjct: 271 FVDTAGIRK 279



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G
Sbjct: 47  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGG 101


>gi|310778034|ref|YP_003966367.1| ribosome-associated GTPase EngA [Ilyobacter polytropus DSM 2926]
 gi|309747357|gb|ADO82019.1| ribosome-associated GTPase EngA [Ilyobacter polytropus DSM 2926]
          Length = 439

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 7/87 (8%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRETD 281
           I+G  NAGKSSL N L+ K+ AIV+DI GTTRD +  T + +   Y+  + DTAGIR   
Sbjct: 181 IIGKPNAGKSSLVNRLSGKERAIVSDIAGTTRDAIDTTFEYNYNKYI--LIDTAGIRRKS 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   +E   + R    ++ +D+ +L+
Sbjct: 239 KVEESLEYYSVLRAIKTIKRSDVCMLM 265



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L    +AIV D PG TRD L  + D  G    I DT G+   +
Sbjct: 5   VAIVGRPNVGKSTLFNKLVGDRIAIVDDQPGVTRDRLYRETDWLGTEFVIVDTGGLEPRN 64

Query: 282 -DIVEKEGIKRTFLEVENADLILLL 305
            D +  +  ++  + +  AD+IL +
Sbjct: 65  KDFMMTKIKQQAEVAINEADVILFV 89


>gi|238852698|ref|ZP_04643108.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 202-4]
 gi|282852069|ref|ZP_06261427.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 224-1]
 gi|238834844|gb|EEQ27071.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 202-4]
 gi|282556829|gb|EFB62433.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 224-1]
          Length = 435

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  +   IV++I GTTRD +      +G    I DTAGIR    +
Sbjct: 179 VIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKV 238

Query: 284 VEKE---GIKRTFLEVENADLILLL 305
            EK     + R    +E +D+ LL+
Sbjct: 239 YEKTEKYSVLRAISAIEESDITLLV 263



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D  G TRD +    +  G+   + DT GI    
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLDS 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
             +E++   +  + ++ AD+I++L ++  
Sbjct: 66  GEIEEQIKAQAEIAIDEADVIVMLGDVTQ 94


>gi|225352117|ref|ZP_03743140.1| hypothetical protein BIFPSEUDO_03732 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157364|gb|EEG70703.1| hypothetical protein BIFPSEUDO_03732 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 709

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 19/177 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI-----SFPKNIDFIFIGTKSDL 331
           + +E     +  + V+ AD ++L+ +      N+ + I     +  K +  + +    D 
Sbjct: 335 EGIESAIASQAQIAVQLADAVVLVVDGQVGLTNTDERIVKMLRASGKPV-TLAVNKVDDR 393

Query: 332 YSTY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            S Y T E+  +       IS+  G G+ EL++     L    K   F  PSH R +
Sbjct: 394 ESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALDSLKKAEKTSGFLTPSHLRRV 450



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA ++  +V D+ GTTRD +   + +D E +L    DTAGI+
Sbjct: 449 RVALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWL--FIDTAGIK 506


>gi|219682497|ref|YP_002468881.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|254783142|sp|B8D8C1|DER_BUCAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|219622230|gb|ACL30386.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|311086326|gb|ADP66408.1| GTP-binding protein EngA [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086900|gb|ADP66981.1| GTP-binding protein EngA [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 453

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 19/166 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           IV++G +N GKS+LFN L K   A+V + PG TRD       L+    + + DTAG+   
Sbjct: 5   IVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKIILIDTAGLDIK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------------KEIN--SKKEISFPKNIDFI 323
            + +EK+   +T + ++ A LIL L               K I    KK I     ID I
Sbjct: 65  LNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVINKIDGI 124

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK-IKSILSNKFKK 368
              +K + + +   E    IS+   +G+  LIN+ +   +S KFKK
Sbjct: 125 NEASKINEFYSLGFEKIQKISASHNQGINTLINRYLIPWISEKFKK 170



 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIR 278
           K+  +G  N GKS+L N + K++  I ++ PGTT D ++  I  + E Y   + DTAG  
Sbjct: 188 KVAFIGRPNVGKSTLINGILKEERMITSNTPGTTLDSISTPIKYNYENYT--LIDTAGAS 245

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
           +    +   ++  I +T   +E +++ILL+
Sbjct: 246 KKKKKINDFQRFSIIKTLQTIEKSNVILLI 275


>gi|311087490|gb|ADP67570.1| GTP-binding protein EngA [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 453

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 19/166 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           IV++G +N GKS+LFN L K   A+V + PG TRD       L+    + + DTAG+   
Sbjct: 5   IVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKIILIDTAGLDIK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------------KEIN--SKKEISFPKNIDFI 323
            + +EK+   +T + ++ A LIL L               K I    KK I     ID I
Sbjct: 65  LNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVINKIDGI 124

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK-IKSILSNKFKK 368
              +K + + +   E    IS+   +G+  LIN+ +   +S KFKK
Sbjct: 125 NEASKINEFYSLGFEKIQKISASHNQGINTLINRYLIPWISEKFKK 170



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIR 278
           K+  +G  N GKS+L N + K++  I ++ PGTT D ++  I  + E Y   + DTAG  
Sbjct: 188 KVAFIGRPNVGKSTLINGILKEERMITSNTPGTTLDSISTPIKYNYENYT--LIDTAGAS 245

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
           +    +   ++  I +T   +E +++ILL+
Sbjct: 246 KKKKKINDFQRFSIIKTLQTIEKSNVILLI 275


>gi|91070353|gb|ABE11270.1| GTP-binding protein [uncultured Prochlorococcus marinus clone
           HF10-88F10]
          Length = 457

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL N++  +  AIV+DI GTT D +   +       KI DTAGIR   ++
Sbjct: 181 IIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNYWKIIDTAGIRRKKNV 240

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E  GI R F  ++ +D+ +L+
Sbjct: 241 KYGTEFFGINRAFKSIDRSDVCVLV 265



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   +I DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN 309
           D      I+ + FL +E A L LL+ + N
Sbjct: 66  DSEFLPEIRTQVFLALEEASLALLVVDGN 94


>gi|157412804|ref|YP_001483670.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9215]
 gi|166920102|sp|A8G3A3|DER_PROM2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157387379|gb|ABV50084.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str.
           MIT 9215]
          Length = 457

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL N++  +  AIV+DI GTT D +   +       KI DTAGIR   ++
Sbjct: 181 IIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNYWKIIDTAGIRRKKNV 240

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E  GI R F  ++ +D+ +L+
Sbjct: 241 KYGTEFFGINRAFKSIDRSDVCVLV 265



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   +I DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN 309
           D      I+ + FL +E A L LL+ + N
Sbjct: 66  DSEFLPEIRTQVFLALEEASLALLVVDGN 94


>gi|226946062|ref|YP_002801135.1| GTP-binding protein EngA [Azotobacter vinelandii DJ]
 gi|259645867|sp|C1DE52|DER_AZOVD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226720989|gb|ACO80160.1| Small GTP-binding protein EngA [Azotobacter vinelandii DJ]
          Length = 491

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  IV D  GTTRD + I  + +     + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERDEDKYTLIDTAG 252

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R    I   VEK  + +T   +++A++++ +
Sbjct: 253 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFV 284



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   AIV +  G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKTRDAIVAEYAGLTRDRQYGEAKWQGRTYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++ +  +++   +E AD +L +
Sbjct: 65  EGIDAKMAEQSLQAIEEADAVLFM 88


>gi|312869092|ref|ZP_07729266.1| ribosome biogenesis GTPase Der [Lactobacillus oris PB013-T2-3]
 gi|311095338|gb|EFQ53608.1| ribosome biogenesis GTPase Der [Lactobacillus oris PB013-T2-3]
          Length = 437

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHGEWLGKNFNMIDTGGIELSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +  +  ++  + ++ AD+I+L+ ++ S           I +  N   +    K D   
Sbjct: 66  QPLLTQIRQQAEIAIDEADVIVLVVDVESGVTDADEQVARILYRSNKPVVLAVNKVDNPE 125

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358
              + YD         + +SS  G GL +L++ +
Sbjct: 126 RRNDIYDFYSLGLGEPYPVSSVHGVGLGDLLDAV 159



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL N +  ++  IV+++ GTTRD + T  +  +G    + DTAGIR+   
Sbjct: 179 LIGRPNVGKSSLVNGILGENRVIVSNMAGTTRDAINTRFVAKDGQEFTMIDTAGIRKQGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLL 305
           I    E+  + R    ++ +D++L++
Sbjct: 239 IYENTERYALMRAMRAIDGSDVVLVV 264


>gi|332185040|ref|ZP_08386789.1| ribosome-associated GTPase EngA [Sphingomonas sp. S17]
 gi|332014764|gb|EGI56820.1| ribosome-associated GTPase EngA [Sphingomonas sp. S17]
          Length = 456

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G   ++ DTAG  + D
Sbjct: 7   VAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDAHLLGLDFRVIDTAGYEDED 66

Query: 282 -DIVEKEGIKRTFLEVENADLILLL 305
            D +     ++T   V  AD+ L L
Sbjct: 67  PDTLPGRMRRQTEAAVGEADVALFL 91



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 8/93 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGYLVKISDTA 275
           K+ I+G  NAGKS+L N    +D  I     G TRD + ID      D E   V++ DTA
Sbjct: 185 KLAIVGRPNAGKSTLINRFLGQDRLITGPEAGITRDSIAIDWEWRDRDGEVRQVRLIDTA 244

Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           G+R   +  D +EK  +      V+ A++++LL
Sbjct: 245 GMRKKAKVQDKLEKLSVADALRAVDFAEVVVLL 277


>gi|116626742|ref|YP_828898.1| GTP-binding protein Era [Candidatus Solibacter usitatus Ellin6076]
 gi|116229904|gb|ABJ88613.1| GTP-binding protein Era [Candidatus Solibacter usitatus Ellin6076]
          Length = 304

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L NAL  + VAIV D P TTR  +   L L    +  +DT G
Sbjct: 6   RSGF-VSLIGRPNAGKSTLLNALVGQKVAIVADKPQTTRTSIQGVLTLPEAQIVFADTPG 64

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           I + D  + K  +      +E  DL+L + +   K
Sbjct: 65  IHKADTPLNKRLMDTVRGALEERDLLLFVADATRK 99


>gi|319946441|ref|ZP_08020678.1| ribosome-associated GTPase EngA [Streptococcus australis ATCC
           700641]
 gi|319747409|gb|EFV99665.1| ribosome-associated GTPase EngA [Streptococcus australis ATCC
           700641]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDAEGQEYTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTL 299



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +   +   I DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATAEWLNHQFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|315929258|gb|EFV08474.1| small GTP-binding domain protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 394

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 27/144 (18%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211
           L  LY +W++K  H   F+  D    EEE++++F                  +  +GK  
Sbjct: 83  LDELY-EWLEKFLH-EEFLIPD----EEENLEDFLE----------------YYEEGKEF 120

Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E+ +N  ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++
Sbjct: 121 QFKEVEQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIE 180

Query: 271 ISDTAGIRETDDI--VEKEGIKRT 292
             DTAGIR+   I  +E+  + RT
Sbjct: 181 FVDTAGIRKRGKIQGLERFALNRT 204


>gi|146283357|ref|YP_001173510.1| GTP-binding protein EngA [Pseudomonas stutzeri A1501]
 gi|166225844|sp|A4VNW7|DER_PSEU5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145571562|gb|ABP80668.1| GTP-binding protein EngA [Pseudomonas stutzeri A1501]
 gi|327481749|gb|AEA85059.1| GTP-binding protein EngA [Pseudomonas stutzeri DSM 4166]
          Length = 499

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + G KI I+G  N GKS+L N +  ++  IV D  GTTRD + I  + +     + DTAG
Sbjct: 201 KEGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERDEEKYTLIDTAG 260

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R    I   VEK  + +T   +++A++++ +
Sbjct: 261 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFV 292



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   AIV +  G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEAKWQGRTYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++ +  +++   +E AD +L +
Sbjct: 65  EGIDAKMAEQSLQAIEEADAVLFM 88


>gi|8134431|sp|Q49884|DER_MYCLE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|467147|gb|AAA50911.1| u0247e [Mycobacterium leprae]
          Length = 461

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 29/169 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D    G    + DT G  
Sbjct: 24  GPVVAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDAMWTGRRFVVQDTGGWE 83

Query: 279 ETDDIVEKEGIKRTFLE-----VENADLILLLKEINSKKEIS-------FPKNIDFIFIG 326
                 + +G+KR   E     +  AD ++L+ ++      +         ++   +F+ 
Sbjct: 84  P-----DAKGLKRLVAEQASVAMRTADAVILVVDVGVGATDADEAAARILLRSGKLVFLA 138

Query: 327 TK-----------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                        S L+S    E  H IS+  G G+ +L++K+ + L N
Sbjct: 139 ANKVDGEKGESDASALWSLGLGE-PHAISAMHGRGVADLLDKVLAALPN 186



 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA    ++V +  GTT D +   +++ G + +  DTAG+R  
Sbjct: 199 RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIEMGGRVWRFVDTAGLRRK 258

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305
             + +  G +     RT   +++A+++++L
Sbjct: 259 --VGQASGHEFYASVRTHGAIDSAEVVIML 286


>gi|15617192|ref|NP_240405.1| GTP-binding protein EngA [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681942|ref|YP_002468328.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|257471654|ref|ZP_05635653.1| GTP-binding protein EngA [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11132317|sp|P57662|DER_BUCAI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783141|sp|B8D8G4|DER_BUCA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|25328230|pir||C85000 hypothetical GTP-binding protein [imported] - Buchnera sp.  (strain
           APS)
 gi|10039257|dbj|BAB13291.1| hypothetical GTP-binding protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219624785|gb|ACL30940.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
          Length = 453

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 19/166 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           IV++G +N GKS+LFN L K   A+V + PG TRD       L+    + + DTAG+   
Sbjct: 5   IVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKIILIDTAGLDIK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------------KEIN--SKKEISFPKNIDFI 323
            + +EK+   +T + ++ A LIL L               K I    KK I     ID I
Sbjct: 65  LNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVINKIDGI 124

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK-IKSILSNKFKK 368
              +K + + +   E    IS+   +G+  LIN+ +   +S KFKK
Sbjct: 125 NEASKINEFYSLGFEKIQKISASHNQGINTLINRYLIPWISEKFKK 170



 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIR 278
           K+  +G  N GKS+L N + K++  I ++ PGTT D ++  I  + E Y   + DTAG  
Sbjct: 188 KVAFIGRPNVGKSTLINGILKEERMITSNTPGTTLDSISTPIKYNYENYT--LIDTAGAS 245

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
           +    +   ++  I +T   +E +++ILL+
Sbjct: 246 KKKKKINDFQRFSIIKTLQTIEKSNVILLI 275


>gi|325475284|gb|EGC78469.1| GTP-binding protein EngA [Treponema denticola F0402]
          Length = 476

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 29/181 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I I+G  N GKS+L N L     +I++++ GTTRD++  +   +     I DTAGIR  
Sbjct: 210 RITIVGKPNTGKSTLANYLTGSSASIISNVAGTTRDIVEGEFSYKNKKFLIQDTAGIRRK 269

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKS 329
            + ++ +E   + R    ++NAD++  L ++        KK I    N  +  IF+  K 
Sbjct: 270 AKVNEDIEYYSVVRAIKSMDNADIVFHLIDVQEGLTEQDKKIIVQATNRGLGVIFVLNKW 329

Query: 330 DLY----STYTEEYDHL--------------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           DL       + +E + +              IS+  G G++EL+N    +     KK+  
Sbjct: 330 DLMEQTKKAFKDEEERIKVMFGKMDYAPVLAISANEGTGIKELLNTAVKMFEQLNKKIET 389

Query: 372 S 372
           S
Sbjct: 390 S 390



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           I I+G  N GKS+LFN   +K  +I    PG TRD +     + G  V + DT G + T 
Sbjct: 33  IAIVGRPNVGKSTLFNRFLRKRRSITDPTPGVTRDPVEAQAIVNGLPVMLVDTGGFKLTR 92

Query: 281 -----DDIVEKEGIKRTFLEVENADLILLL 305
                +D +++  +++T   ++ AD ILLL
Sbjct: 93  SGDAFEDTIDELVMEKTISTLKKADRILLL 122


>gi|94986558|ref|YP_594491.1| GTP-binding protein EngA [Lawsonia intracellularis PHE/MN1-00]
 gi|166225821|sp|Q1MS56|DER_LAWIP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|94730807|emb|CAJ54169.1| predicted GTPases [Lawsonia intracellularis PHE/MN1-00]
          Length = 453

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 31/166 (18%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             K+ I+G  NAGKSS+ NA+  K+  IV++I GTTRD + I            DTAGIR
Sbjct: 189 ALKLAIIGRPNAGKSSIINAIIGKNKLIVSNIAGTTRDSIDIPFIFNKTQYLFVDTAGIR 248

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF----------PKNIDFIFI 325
              +  D VE+  +  +      A++ L +  I++ + I+            + I FI +
Sbjct: 249 RRTKITDPVERFSVNASIKSATKANITLYV--IDATEGITAQDKRLLDLLDTRKIPFILL 306

Query: 326 GTKSDLYS---------TYTEEYDH-------LISSFTGEGLEELI 355
             K+DL +         ++ EE          ++S+ T  GL+++I
Sbjct: 307 INKTDLIAKKQKTLLSKSFKEELQFCPHIPILMVSAVTSSGLDQII 352



 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           KI ++G  N GKS+LFN L +K+ AI  D PG TRD
Sbjct: 4   KIALVGRPNVGKSTLFNRLIRKNRAITHDRPGVTRD 39


>gi|15598994|ref|NP_252488.1| GTP-binding protein EngA [Pseudomonas aeruginosa PAO1]
 gi|107103319|ref|ZP_01367237.1| hypothetical protein PaerPA_01004388 [Pseudomonas aeruginosa PACS2]
 gi|152985588|ref|YP_001346699.1| GTP-binding protein EngA [Pseudomonas aeruginosa PA7]
 gi|254236703|ref|ZP_04930026.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254242490|ref|ZP_04935812.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|313109217|ref|ZP_07795185.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa 39016]
 gi|26006739|sp|Q9HXJ8|DER_PSEAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225840|sp|A6V0W4|DER_PSEA7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|9949972|gb|AAG07186.1|AE004798_9 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126168634|gb|EAZ54145.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126195868|gb|EAZ59931.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|150960746|gb|ABR82771.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
 gi|310881687|gb|EFQ40281.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa 39016]
          Length = 493

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  IV D  GTTRD + I  +       + DTAG
Sbjct: 195 KDGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERNEEKYTLIDTAG 254

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R    I   VEK  + +T   +++A++++ +
Sbjct: 255 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFV 286



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   AIV +  G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++ +  +++   +E AD +L L
Sbjct: 65  EGIDAKMAEQSLQAIEEADAVLFL 88


>gi|229084606|ref|ZP_04216875.1| GTP-binding protein engA [Bacillus cereus Rock3-44]
 gi|228698682|gb|EEL51398.1| GTP-binding protein engA [Bacillus cereus Rock3-44]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NAL  ++  IV+++ GTTRD +      +G    I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D++L++
Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +  ++  + ++ +D+I+ +
Sbjct: 66  EPFLTQIRQQAEVAIDESDVIIFM 89


>gi|187934744|ref|YP_001887658.1| GTP-binding protein [Clostridium botulinum B str. Eklund 17B]
 gi|187722897|gb|ACD24118.1| GTP-binding protein [Clostridium botulinum B str. Eklund 17B]
          Length = 395

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 8/128 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  NAGKSSL NAL  + +++V+D PGTT D ++  ++L     V I DTAG
Sbjct: 8   NRLHISIFGKRNAGKSSLINALTNQPLSLVSDTPGTTTDPVSKAMELLPLGPVVIIDTAG 67

Query: 277 IRETDDI--VEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKS 329
           + +T D+  +  E  K   L+ + A L+   ++ N + E  +      KNI  I +  K 
Sbjct: 68  LDDTGDLGTLRVEKTKEVMLKTDLAVLVFSAEDNNIENEKEWLKDLKQKNIPVIGVINKI 127

Query: 330 DLYSTYTE 337
           DL  +  E
Sbjct: 128 DLEMSNLE 135


>gi|296387686|ref|ZP_06877161.1| GTP-binding protein EngA [Pseudomonas aeruginosa PAb1]
          Length = 493

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  IV D  GTTRD + I  +       + DTAG
Sbjct: 195 KDGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERNEEKYTLIDTAG 254

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R    I   VEK  + +T   +++A++++ +
Sbjct: 255 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFV 286



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   AIV +  G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++ +  +++   +E AD +L L
Sbjct: 65  EGIDAKMAEQSLQAIEEADAVLFL 88


>gi|228990617|ref|ZP_04150582.1| GTP-binding protein engA [Bacillus pseudomycoides DSM 12442]
 gi|228996716|ref|ZP_04156353.1| GTP-binding protein engA [Bacillus mycoides Rock3-17]
 gi|228763035|gb|EEM11945.1| GTP-binding protein engA [Bacillus mycoides Rock3-17]
 gi|228769143|gb|EEM17741.1| GTP-binding protein engA [Bacillus pseudomycoides DSM 12442]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NAL  ++  IV+++ GTTRD +      +G    I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D++L++
Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +  ++  + ++ AD+I+ +
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFM 89


>gi|254526548|ref|ZP_05138600.1| small GTP-binding protein domain [Prochlorococcus marinus str. MIT
           9202]
 gi|221537972|gb|EEE40425.1| small GTP-binding protein domain [Prochlorococcus marinus str. MIT
           9202]
          Length = 457

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL N++  +  AIV+DI GTT D +   +       KI DTAGIR   ++
Sbjct: 181 IIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNYWKIIDTAGIRRKKNV 240

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E  GI R F  ++ +D+ +L+
Sbjct: 241 KYGTEFFGINRAFKSIDRSDVCVLV 265



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   +I DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN 309
           D      I+ + FL +E A L LL+ + N
Sbjct: 66  DSEFLPEIRTQVFLALEEASLALLVVDGN 94


>gi|257876568|ref|ZP_05656221.1| GTP-binding protein engA [Enterococcus casseliflavus EC20]
 gi|257810734|gb|EEV39554.1| GTP-binding protein engA [Enterococcus casseliflavus EC20]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      E G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSESGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              I    EK  + R    +E +D++L++
Sbjct: 236 KGKIYESTEKYSVMRAMRAIERSDVVLMV 264



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + ++ AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIVFI 89


>gi|332367384|gb|EGJ45117.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1059]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|323485443|ref|ZP_08090791.1| small GTP-binding protein [Clostridium symbiosum WAL-14163]
 gi|323695069|ref|ZP_08109212.1| small GTP-binding protein [Clostridium symbiosum WAL-14673]
 gi|323401306|gb|EGA93656.1| small GTP-binding protein [Clostridium symbiosum WAL-14163]
 gi|323500871|gb|EGB16790.1| small GTP-binding protein [Clostridium symbiosum WAL-14673]
          Length = 398

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 19/164 (11%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKI 271
           GE I  G+     G  NAGKSSL NA+  +++AIV+++ GTT D +   ++L     V I
Sbjct: 9   GERIHIGF----FGRRNAGKSSLVNAVTGQELAIVSEVKGTTTDPVCKSMELLPLGPVMI 64

Query: 272 SDTAGIRETDDIVEKE-GIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDF 322
            DT GI +  ++ EK  G  R  L     D+ +L+ + ++ K         I   KNI +
Sbjct: 65  IDTPGIDDEGELGEKRVGKSRQIL--NKTDIAVLVVDASAGKGEQEDRLIRIFRRKNIPY 122

Query: 323 IFIGTKSDLYSTYTEE---YDHLISSFTGEGLEELINKIKSILS 363
           +    K+DL      E   ++  +S+ TG  + EL  +I +++S
Sbjct: 123 LVAYNKTDLNGAEGTEGGRHEIWVSAATGYHIHELKERIAALVS 166


>gi|306834169|ref|ZP_07467289.1| ribosome-associated GTPase EngA [Streptococcus bovis ATCC 700338]
 gi|304423742|gb|EFM26888.1| ribosome-associated GTPase EngA [Streptococcus bovis ATCC 700338]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + I GTTRD +  +  D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSDGQEYTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R+   ++ +D++L++  IN+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  +I
Sbjct: 272 REYDKRIAGFAHEAGKGIIIVVNKWDTI 299



 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +  AD+I+ +
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFV 89


>gi|251778361|ref|ZP_04821281.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082676|gb|EES48566.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 397

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 8/128 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  NAGKSSL NAL  + +++V+D PGTT D ++  ++L     V I DTAG
Sbjct: 8   NRLHISIFGKRNAGKSSLINALTNQPLSLVSDTPGTTTDPVSKAMELLPLGPVVIIDTAG 67

Query: 277 IRETDDI--VEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKS 329
           + +T D+  +  E  K   L+ + A L+   ++ N + E  +      KNI  I +  K 
Sbjct: 68  LDDTGDLGTLRVEKTKEVMLKTDLAVLVFSAEDNNIENEKEWFKDLKQKNIPVIGVLNKI 127

Query: 330 DLYSTYTE 337
           DL  +  E
Sbjct: 128 DLGMSNLE 135


>gi|163746867|ref|ZP_02154224.1| GTP-binding protein EngA [Oceanibulbus indolifex HEL-45]
 gi|161379981|gb|EDQ04393.1| GTP-binding protein EngA [Oceanibulbus indolifex HEL-45]
          Length = 493

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAAKLADLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TDD ++    + T   V+ AD+ L +
Sbjct: 63  VTDDSLQGRMRRLTERAVDMADICLFM 89



 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-----YLVKISDTA 275
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++  +  G       ++I DTA
Sbjct: 203 QVAVVGRPNAGKSTLINQILGEDRLLTGPEAGITRDAISLMTEWAGPDGDPVPMRIFDTA 262

Query: 276 GIRETDDIVEK 286
           G+R+   I EK
Sbjct: 263 GMRKKAKIQEK 273


>gi|15827717|ref|NP_301980.1| GTP-binding protein EngA [Mycobacterium leprae TN]
 gi|221230194|ref|YP_002503610.1| GTP-binding protein EngA [Mycobacterium leprae Br4923]
 gi|13093268|emb|CAC31753.1| possible GTP-binding protein [Mycobacterium leprae]
 gi|219933301|emb|CAR71467.1| possible GTP-binding protein [Mycobacterium leprae Br4923]
          Length = 462

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 29/169 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D    G    + DT G  
Sbjct: 25  GPVVAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDAMWTGRRFVVQDTGGWE 84

Query: 279 ETDDIVEKEGIKRTFLE-----VENADLILLLKEINSKKEIS-------FPKNIDFIFIG 326
                 + +G+KR   E     +  AD ++L+ ++      +         ++   +F+ 
Sbjct: 85  P-----DAKGLKRLVAEQASVAMRTADAVILVVDVGVGATDADEAAARILLRSGKLVFLA 139

Query: 327 TK-----------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                        S L+S    E  H IS+  G G+ +L++K+ + L N
Sbjct: 140 ANKVDGEKGESDASALWSLGLGE-PHAISAMHGRGVADLLDKVLAALPN 187



 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA    ++V +  GTT D +   +++ G + +  DTAG+R  
Sbjct: 200 RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIEMGGRVWRFVDTAGLRRK 259

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305
             + +  G +     RT   +++A+++++L
Sbjct: 260 --VGQASGHEFYASVRTHGAIDSAEVVIML 287


>gi|261367335|ref|ZP_05980218.1| ribosome-associated GTPase EngA [Subdoligranulum variabile DSM
           15176]
 gi|282570094|gb|EFB75629.1| ribosome-associated GTPase EngA [Subdoligranulum variabile DSM
           15176]
          Length = 447

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS++FN L  + +AIV D PG TRD +  D +  G    + DT GI    
Sbjct: 6   VAIVGRPNVGKSTIFNKLTGQRLAIVEDTPGVTRDRIFCDCEWCGNKFLLVDTGGIEPRI 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD +     ++  + +++AD I+++ E+ +
Sbjct: 66  DDGLLAHMREQAQIAIDSADCIIMVTELTN 95



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK--ISDTAGIRE 279
           + ++G  N GKSSL N +  ++  IV +  GTTRD   ID  +E    K   +DTAG+R+
Sbjct: 180 VAVIGRPNVGKSSLINHILGENRLIVANEAGTTRD--AIDTLVENKYGKFVFTDTAGLRK 237

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +   VE+  + R+   VE + + +++
Sbjct: 238 KGKVESGVERYSVLRSLAAVERSRVCVIM 266


>gi|222149419|ref|YP_002550376.1| GTP-binding protein EngA [Agrobacterium vitis S4]
 gi|254783133|sp|B9JZQ5|DER_AGRVS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|221736402|gb|ACM37365.1| GTP-binding protein [Agrobacterium vitis S4]
          Length = 474

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L      I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGEAKLVDLRFHIVDTAGLEE 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305
              D +E     +T + ++ ADL L +
Sbjct: 63  AGADTLEGRMRAQTEIAIDEADLSLFV 89



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 8/134 (5%)

Query: 154 LSSLYGQ-WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212
           +S+ +GQ  ID    I   I  D  F E++D       +V    + L+  +     +  L
Sbjct: 144 ISAEHGQGMIDLRDAIVEAIGVDRAFPEDDD-------DVAETDIVLRPTVEGEDDEEDL 196

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
                   ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ 
Sbjct: 197 AYDDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMF 256

Query: 273 DTAGIRETDDIVEK 286
           DTAG+R    ++EK
Sbjct: 257 DTAGMRRKARVIEK 270


>gi|313890874|ref|ZP_07824498.1| ribosome biogenesis GTPase Der [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313120772|gb|EFR43887.1| ribosome biogenesis GTPase Der [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 31/151 (20%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAG 276
           N  +  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG
Sbjct: 173 NIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTSFTDSDGQEFTMIDTAG 232

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYS 333
           +R++  +    EK  + R    ++ +D++L++  IN+++ I                   
Sbjct: 233 MRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI------------------- 271

Query: 334 TYTEEYDHLISSF---TGEGLEELINKIKSI 361
               EYD  I+ F    G+G+  ++NK  +I
Sbjct: 272 ---REYDKRIAGFAHEAGKGMIIVVNKWDTI 299



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAQIAMDEADVIVFV 89


>gi|227431693|ref|ZP_03913723.1| GTP-binding protein EngA [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352517|gb|EEJ42713.1| GTP-binding protein EngA [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + +AIV D+PG TRD L    +   Y  ++ DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRMAGERIAIVEDMPGVTRDRLYAPAEWLNYEFRMIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
                E   +  L +  AD+I+++
Sbjct: 66  APFLAEIRGQVELAINEADVIVMV 89



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRETDD 282
           I+G  N GKSS+ NA+  +   IV+DI GTTRD + T  +  EG    + DTAG+R+   
Sbjct: 179 IIGRPNVGKSSIVNAMLGEKRVIVSDIEGTTRDAIDTRFVTEEGDEFVMVDTAGMRKRGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLL 305
           I    EK  + R    ++++++IL++
Sbjct: 239 IYENTEKYSVMRAMKAIDDSNVILMV 264


>gi|330752472|emb|CBL87421.1| GTP-binding protein engA [uncultured Flavobacteria bacterium]
          Length = 435

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ ++G  N GKS+  N +  ++  IVTDI GTTRD +     + G+  +I DTAG+R  
Sbjct: 177 KLAVVGKPNVGKSTFINTILGEERNIVTDIAGTTRDSVHTHYQMFGFDFEIVDTAGLRKK 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +  D +E     RT   ++ +D+ LL+
Sbjct: 237 KQVTDHLEFYSTVRTIKAIDESDVCLLM 264



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AI  D  GTTRD     +    +   + DT G I ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTETREAITDDTSGTTRDRKYGTVVWTNHQFNVIDTGGWITKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           DD  E     +  + +E ADLIL + EI
Sbjct: 65  DDSFEAAIRGQVEISLEEADLILFMVEI 92


>gi|307264991|ref|ZP_07546552.1| small GTP-binding protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326390092|ref|ZP_08211654.1| small GTP-binding protein [Thermoanaerobacter ethanolicus JW 200]
 gi|306919976|gb|EFN50189.1| small GTP-binding protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325993957|gb|EGD52387.1| small GTP-binding protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 407

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 22/153 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I + G  NAGKSSL NAL  ++VA+V+DI GTT D ++  ++ L    V I DTAG+ + 
Sbjct: 12  IALFGRRNAGKSSLINALTNQEVALVSDIAGTTTDPVSKAMEILPIGPVVIIDTAGLDDV 71

Query: 281 DDIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLY 332
             + E   +K+T+  +   DL +L       + E   K  +I   KNI  + +  K DL 
Sbjct: 72  GPLGELR-VKKTYEVLNKTDLAILVIDGTEGVTEFEEKILQIITEKNIPVVGVINKKDL- 129

Query: 333 STYTE----EYDHL-------ISSFTGEGLEEL 354
           S Y++    E++         +S+   EG+EEL
Sbjct: 130 SNYSQLQKKEWEKRLNLKLIEVSARNKEGIEEL 162


>gi|209545222|ref|YP_002277451.1| GTP-binding protein EngA [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532899|gb|ACI52836.1| small GTP-binding protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 479

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +VI G  N GKS+LFN L  +  A+V D PG TRD    +  + G  V++ DTAG+ E 
Sbjct: 16  VVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEAETVMRGRRVRLVDTAGLEEA 74



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N L  ++  I    PG TRD +T+ L  E   +++ DTAG+R  
Sbjct: 212 RLAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSVTVLLHDEHGPIQLVDTAGLRRR 271

Query: 281 DDI---VEKEGIKRTFLEVENADLILL 304
             I   +EK  +  T   ++ A++++L
Sbjct: 272 ARIEESLEKMSVSATIEALKMAEVVVL 298


>gi|327490071|gb|EGF21859.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1058]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|325068743|ref|ZP_08127416.1| GTP-binding protein Der [Actinomyces oris K20]
          Length = 533

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 4/90 (4%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S EVL+ ++ +  ++S+  +    G++    ++I ++G  N GKSSL N++A ++  +V 
Sbjct: 245 SGEVLDAVMEVLPEVSAVATAAPEGDL----HRIALVGRPNVGKSSLLNSIAGRERVVVN 300

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           +  GTTRD +   ++L+G      DTAGIR
Sbjct: 301 ETAGTTRDPVDEIIELDGRQWVFVDTAGIR 330



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 3/127 (2%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKL--GEIIRNGYKIV-ILGHSNAGKSSLFNA 238
           ED++  + +  L D    + D++   + G L  G+ +  G  ++ ++G  N GKS+L N 
Sbjct: 56  EDLRAQAMRAGLADYELDEEDLALLEADGGLPTGDSVEPGLPVLAVVGRPNVGKSTLVNR 115

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           +  +  A+V D PG TRD ++   +  G    I DT G       ++     +  + VE 
Sbjct: 116 VLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVDVAGLDAAVATQAEIAVEM 175

Query: 299 ADLILLL 305
           AD +LL+
Sbjct: 176 ADAVLLV 182


>gi|323350996|ref|ZP_08086653.1| ribosome-associated GTPase EngA [Streptococcus sanguinis VMC66]
 gi|322122720|gb|EFX94429.1| ribosome-associated GTPase EngA [Streptococcus sanguinis VMC66]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|29833066|ref|NP_827700.1| GTP-binding protein EngA [Streptomyces avermitilis MA-4680]
 gi|37999529|sp|Q828Y7|DER_STRAW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|29610188|dbj|BAC74235.1| putative GTP-binding protein [Streptomyces avermitilis MA-4680]
          Length = 491

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            G  I    +I ++G  N GKSSL N +A +D  +V +I GTTRD +   ++L G   K 
Sbjct: 220 FGAAIGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNEIAGTTRDPVDELIELGGVTWKF 279

Query: 272 SDTAGIRE 279
            DTAGIR+
Sbjct: 280 VDTAGIRK 287



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G  +  
Sbjct: 55  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDV 114

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     +    +E AD ++ +
Sbjct: 115 LGIDASVAAQAEYAIEAADAVVFV 138


>gi|188590462|ref|YP_001922641.1| GTP-binding protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188500743|gb|ACD53879.1| GTP-binding protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 397

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 8/128 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  NAGKSSL NAL  + +++V+D PGTT D ++  ++L     V I DTAG
Sbjct: 8   NRLHISIFGKRNAGKSSLINALTNQPLSLVSDTPGTTTDPVSKAMELLPLGPVVIIDTAG 67

Query: 277 IRETDDI--VEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKS 329
           + +T D+  +  E  K   L+ + A L+   ++ N + E  +      KNI  I +  K 
Sbjct: 68  LDDTGDLGTLRVEKTKEVMLKTDLAVLVFSAEDNNIENEKEWFKDLKQKNIPVIGVINKI 127

Query: 330 DLYSTYTE 337
           DL  +  E
Sbjct: 128 DLGMSNLE 135


>gi|254476934|ref|ZP_05090320.1| small GTP-binding protein domain [Ruegeria sp. R11]
 gi|214031177|gb|EEB72012.1| small GTP-binding protein domain [Ruegeria sp. R11]
          Length = 488

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVVDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TD+ +E    + T   V+ AD+ L +
Sbjct: 63  ATDNSLEGRMRRLTERAVDMADVCLFM 89



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 41/66 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D +G  +++ DTAG+R+ 
Sbjct: 203 QVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQIDWQGVPMRVFDTAGMRKK 262

Query: 281 DDIVEK 286
             + EK
Sbjct: 263 AKVQEK 268


>gi|157150518|ref|YP_001449828.1| GTP-binding protein EngA [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189037167|sp|A8AVL8|DER_STRGC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157075312|gb|ABV09995.1| GTP-binding protein engA [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    D       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATADWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|116618390|ref|YP_818761.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122271410|sp|Q03WN4|DER_LEUMM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|116097237|gb|ABJ62388.1| Predicted GTPase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + +AIV D+PG TRD L    +   Y  ++ DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRMAGERIAIVEDMPGVTRDRLYAPAEWLNYEFRMIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
                E   +  L +  AD+I+++
Sbjct: 66  APFLAEIRGQVELAINEADVIVMV 89



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRETDD 282
           I+G  N GKSS+ NA+  +   IV+DI GTTRD + T  +  EG    + DTAG+R+   
Sbjct: 179 IIGRPNVGKSSIVNAMLGEKRVIVSDIEGTTRDAIDTRFVTEEGDEFVMVDTAGMRKRGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLL 305
           I    EK  + R    ++++++IL++
Sbjct: 239 IYENTEKYSVMRAMKAIDDSNVILMV 264


>gi|26553682|ref|NP_757616.1| GTP-binding protein EngA [Mycoplasma penetrans HF-2]
 gi|37999697|sp|Q8EWH6|DER_MYCPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|26453688|dbj|BAC44020.1| predicted ATP/GTP-binding protein [Mycoplasma penetrans HF-2]
          Length = 444

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 12/142 (8%)

Query: 202 DISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           D+   I   KL EI   + +K  I+G  N GKSSL N +  +D  I ++I  TTRD +  
Sbjct: 154 DLLDAIVDTKLKEIKEEDTFKFCIIGRPNVGKSSLVNCILNEDRMITSNIANTTRDAIDS 213

Query: 261 DLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL----KEINSKKE 313
           +   +  L  I DTAGIR    I   V+K    R    +  ++LI+++    +E N + E
Sbjct: 214 NFKKDNLLYTIIDTAGIRRKGKIQENVDKYAYLRVEQSISRSNLIVIVLDGSEEFNEQDE 273

Query: 314 I----SFPKNIDFIFIGTKSDL 331
           +    +   NI  I +  K D+
Sbjct: 274 VIAGLAHKANIPSIIVVNKWDI 295



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           K+ I+G  N GKS+LFN + K + +IV D PG TRD +  + +      K+ DT G+
Sbjct: 3   KVAIVGKPNVGKSTLFNRIIKVNKSIVDDKPGITRDRIYANAEWLTQHFKLIDTGGL 59


>gi|324993642|gb|EGC25561.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK405]
 gi|324995046|gb|EGC26959.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK678]
 gi|327462911|gb|EGF09232.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|222152562|ref|YP_002561737.1| GTP-binding protein EngA [Streptococcus uberis 0140J]
 gi|254783170|sp|B9DTQ3|DER_STRU0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|222113373|emb|CAR41004.1| GTP-binding protein EngA [Streptococcus uberis 0140J]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 31/151 (20%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKIS 272
           EI  N  +  ++G  N GKSSL NA+  ++  I + + GTTRD +     D +G    + 
Sbjct: 169 EINDNTIRFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFTDQDGQEYNMI 228

Query: 273 DTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS 329
           DTAG+R++  +    EK  + R    ++ +D++LL+  IN+++ I               
Sbjct: 229 DTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLLV--INAEEGI--------------- 271

Query: 330 DLYSTYTEEYDHLISSF---TGEGLEELINK 357
                   EYD  I+ F    G+G+  ++NK
Sbjct: 272 -------REYDKRIAGFAHEAGKGMIIVVNK 295



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAQIAMDEADVIVFV 89


>gi|162149029|ref|YP_001603490.1| GTP-binding protein EngA [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787606|emb|CAP57202.1| GTP-binding protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 479

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +VI G  N GKS+LFN L  +  A+V D PG TRD    +  + G  V++ DTAG+ E 
Sbjct: 16  VVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEAETVMRGRRVRLVDTAGLEEA 74



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N L  ++  I    PG TRD +T+ L  E   +++ DTAG+R  
Sbjct: 212 RLAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSVTVLLHDEHGPIQLVDTAGLRRR 271

Query: 281 DDI---VEKEGIKRTFLEVENADLILL 304
             I   +EK  +  T   ++ A++++L
Sbjct: 272 GRIEESLEKMSVSATIEALKMAEVVVL 298


>gi|325294622|ref|YP_004281136.1| GTP-binding proten HflX [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065070|gb|ADY73077.1| GTP-binding proten HflX [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 357

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +N   I ++G++N GKS+L  AL KKDV  + +IP  T DV T  L LE   V ISDT G
Sbjct: 184 KNFITIAVVGYTNVGKSTLVKALTKKDV-FIKNIPFATLDVKTGSLYLEDKKVLISDTVG 242

Query: 277 -IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
            IR    +++     K T  EV+ +D++L++ +++SKK
Sbjct: 243 FIRNLPHELI--ASFKATLGEVKESDILLIVFDVSSKK 278


>gi|228475961|ref|ZP_04060669.1| ribosome-associated GTPase EngA [Staphylococcus hominis SK119]
 gi|314936392|ref|ZP_07843739.1| ribosome-associated GTPase EngA [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269784|gb|EEK11264.1| ribosome-associated GTPase EngA [Staphylococcus hominis SK119]
 gi|313655011|gb|EFS18756.1| ribosome-associated GTPase EngA [Staphylococcus hominis subsp.
           hominis C80]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD +  +   +G    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSYDGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++LL+
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLLV 264



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + ++ AD+I+ +
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFM 89


>gi|212696573|ref|ZP_03304701.1| hypothetical protein ANHYDRO_01111 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676429|gb|EEB36036.1| hypothetical protein ANHYDRO_01111 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 325

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 5/114 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           + +LG +N+GKSS  N ++ +DV+IV+   GTT D +   +++  +  V   DTAG  + 
Sbjct: 11  LALLGKTNSGKSSFLNFISDQDVSIVSSQKGTTTDPIKKSMEIHDFGPVLFFDTAGFDDN 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP---KNIDFIFIGTKSDL 331
            ++ EK  I++T   VE +D++L    I+ K E  +    K    IFI +K DL
Sbjct: 71  TNLYEKR-IEKTKKAVEKSDILLYFLSIDDKIEEIYALKEKYKKIIFIASKQDL 123


>gi|325696369|gb|EGD38260.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK160]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTL 299



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|324991285|gb|EGC23218.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK353]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTL 299



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|300173424|ref|YP_003772590.1| GTP-binding protein EngA [Leuconostoc gasicomitatum LMG 18811]
 gi|299887803|emb|CBL91771.1| GTP-binding protein EngA [Leuconostoc gasicomitatum LMG 18811]
          Length = 437

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + +AIV D PG TRD L    +   Y  ++ DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRMAGERIAIVEDQPGVTRDRLYAPAEWLNYEFRMIDTGGIELGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
                E   +  L ++ AD+I+++
Sbjct: 66  APFLAEIRAQVELAIDEADVIVMI 89



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRE 279
           K  I+G  N GKSS+ NA+  +D  IV+ I GTTRD +    +  EG    + DTAG+R+
Sbjct: 177 KFSIIGRPNVGKSSIVNAMLGEDRVIVSSIEGTTRDAIDSRFVTPEGDEFIMVDTAGMRK 236

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    ++N+++IL++
Sbjct: 237 RGKVYENTEKYSVMRALKAIDNSNVILMV 265


>gi|327474514|gb|EGF19919.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK408]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|67921883|ref|ZP_00515399.1| Small GTP-binding protein domain [Crocosphaera watsonii WH 8501]
 gi|67856099|gb|EAM51342.1| Small GTP-binding protein domain [Crocosphaera watsonii WH 8501]
          Length = 533

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 30/230 (13%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            +I+ ++++G+L        K+VI G  +AGK+SL NAL    V  V    GTT+   T 
Sbjct: 120 QEITDNLNRGEL--------KVVIFGTGSAGKTSLVNALFGDIVGDVEATMGTTKIGETY 171

Query: 261 DLDLEGYL--VKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
            L L+G    + I+DT GI E   +  E+E + R       ADL+L + + + ++    P
Sbjct: 172 SLKLKGISREILITDTPGILEAGIEGSERETLARQL--ATEADLLLFVVDNDLRQSEYNP 229

Query: 318 KNIDFIFIGTKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNK----FKKL 369
             I  + +G +S L       YTEE ++ I       LE+L  ++KSI++ K        
Sbjct: 230 LEI-LVNLGKRSLLIFNKIDLYTEEEENQI-------LEQLKERVKSIIAEKDVISLSAK 281

Query: 370 PFSIPSHK-RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           P SI S   + +  L      ++  +   +  G D+IA+N+ L S  LG+
Sbjct: 282 PQSITSQNGKKVQPLPNITPLIKRLAAILRAEGEDLIADNILLQSQRLGE 331


>gi|326385799|ref|ZP_08207428.1| GTP-binding protein EngA [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209778|gb|EGD60566.1| GTP-binding protein EngA [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 454

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 36/60 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +VI+G  N GKS+LFN L  K +A+V D PG TRD    D +L G    I DTAG  + D
Sbjct: 4   VVIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRFGDAELLGLAFTIVDTAGWEDDD 63



 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL------EGYLVKISDT 274
           K+ ++G  NAGKS+L N L  +D  +     G TRD + +D +       E   +++ DT
Sbjct: 185 KLAVVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIAVDWEWRDPATGESRPIRLIDT 244

Query: 275 AGIRETDDIVEK 286
           AG+R+   +V+K
Sbjct: 245 AGMRKKAQVVDK 256


>gi|332652769|ref|ZP_08418514.1| ribosome-associated GTPase EngA [Ruminococcaceae bacterium D16]
 gi|332517915|gb|EGJ47518.1| ribosome-associated GTPase EngA [Ruminococcaceae bacterium D16]
          Length = 441

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKSSL N +  ++  IV+++ GTTRD +    + E       DTAG+R  
Sbjct: 178 KVAIIGKPNVGKSSLVNRILGQERVIVSNMAGTTRDAVDSVFENEKGKFLFIDTAGMRKK 237

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + DD +EK  + R  + +E +D+ L+L
Sbjct: 238 SKVDDRIEKFSVLRATMAIERSDVCLIL 265



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS LFN L  + ++IV D PG TRD L    +       I DT GI   T
Sbjct: 5   VAIVGRPNVGKSMLFNKLCGQRLSIVEDTPGVTRDRLYAQCEWRNRTFDIVDTGGIEPGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD +     ++  + +  A +I+ + ++ +
Sbjct: 65  DDQILSFMREQAEIAISTATVIVFVCDVKT 94


>gi|312114899|ref|YP_004012495.1| ribosome-associated GTPase EngA [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220028|gb|ADP71396.1| ribosome-associated GTPase EngA [Rhodomicrobium vannielii ATCC
           17100]
          Length = 464

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            Y + I+G  N GKS+LFN LA + +A+V D+PG TRD     + +    V ++DTAG+ 
Sbjct: 2   AYTVAIIGRPNVGKSTLFNRLAGRRLALVDDLPGLTRDRKETQIRINRRDVVLTDTAGLE 61

Query: 279 ETDD-IVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           + +   +     +++   +  +DLIL +  I+++ E++
Sbjct: 62  DAEPGSIAARMREQSEQAIAESDLILFV--IDARAELT 97



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           K+ I G  NAGKS+L NAL  ++  I     G TRD +  D    G  V++ DTAG+R
Sbjct: 192 KLAIAGRPNAGKSTLVNALLGEERMITGPEAGLTRDAIAADFQWRGRKVRLYDTAGLR 249


>gi|326692494|ref|ZP_08229499.1| GTP-binding protein Der [Leuconostoc argentinum KCTC 3773]
          Length = 437

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + +AIV D PG TRD L    +   Y  ++ DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRMAGERIAIVEDQPGVTRDRLYAPAEWLNYEFRMIDTGGIELGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    E   +  L ++ AD+I+++
Sbjct: 66  EPFLAEIRAQVELALDEADVIVMV 89



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 4/86 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRETDD 282
           I+G  N GKSS+ NA+  ++  IV+DI GTTRD + T  +  EG    + DTAG+R+   
Sbjct: 180 IIGRPNVGKSSIVNAILGEERVIVSDIEGTTRDAIDTRFVTPEGDEFIMVDTAGMRKRGK 239

Query: 283 I---VEKEGIKRTFLEVENADLILLL 305
           +    EK  + R    +++++++L++
Sbjct: 240 VYENTEKYSVMRALKAIDDSNVVLMV 265


>gi|325695118|gb|EGD37020.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK150]
          Length = 436

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|325687138|gb|EGD29161.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK72]
          Length = 436

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|254487934|ref|ZP_05101139.1| GTP-binding protein [Roseobacter sp. GAI101]
 gi|214044803|gb|EEB85441.1| GTP-binding protein [Roseobacter sp. GAI101]
          Length = 491

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLADLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TDD ++    + T   V+ AD+ L +
Sbjct: 63  VTDDSLQGRMRRLTERAVDMADICLFM 89



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++    EG  ++I DTAG+R+ 
Sbjct: 205 QVAVVGRPNAGKSTLINQIMGEDRLLTGPEAGITRDAISLRTVWEGVPMRIFDTAGMRKK 264

Query: 281 DDIVEK 286
             I EK
Sbjct: 265 AKIQEK 270


>gi|188586247|ref|YP_001917792.1| small GTP-binding protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|226741142|sp|B2A4M9|DER_NATTJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|179350934|gb|ACB85204.1| small GTP-binding protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 440

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET--- 280
           ++G  N GKSSL N +  K+  IV+++PGTTRD +   ++ E       DTAG+R+    
Sbjct: 182 VIGRPNVGKSSLINKILNKERLIVSNMPGTTRDAIDTVIEREDQKYVFIDTAGLRKKSKI 241

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           D+ +EK  + R+   +E +++ LLL ++
Sbjct: 242 DERLEKYSVIRSIKGMERSNIALLLIDV 269



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN +  + ++IV D PG TRD +    +  G+   + DT GI + +
Sbjct: 7   VALVGRPNVGKSALFNRIVGQRISIVDDTPGVTRDRIDGKGEWSGHSFNLIDTGGIFDEE 66

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D + K+ + +  + ++ AD+I+ +
Sbjct: 67  DDILKQVVIQAEVAIDEADVIVFV 90


>gi|257068697|ref|YP_003154952.1| cytidylate kinase [Brachybacterium faecium DSM 4810]
 gi|256559515|gb|ACU85362.1| cytidylate kinase [Brachybacterium faecium DSM 4810]
          Length = 755

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 31/179 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA +   +V DI GTTRD +   + L G      DTAGIR  
Sbjct: 496 RVALVGRPNVGKSSLLNRLAGEQRVVVDDIAGTTRDPVDEKISLGGKDWTFVDTAGIRRR 555

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG--------T 327
             +++ +G       RT   ++ A++ ++L E +        K ID +            
Sbjct: 556 --VLQSQGADYYASLRTRAALDRAEVAVVLLEASEPLSTQDLKIIDMVLESGRALVLAFN 613

Query: 328 KSDLYS-------TYTEEYD--HL-------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           K DL          Y  E D  H+       IS+ TG   E+L+  I++ L +  +++P
Sbjct: 614 KWDLIDEERRRALEYEIERDLGHVAWAPRVNISAETGRHAEKLVPAIETALESWDRRIP 672



 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 17/175 (9%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           G    + RN   + ++G  N GKS+L N +  +  A+V D PG TRD +  + +  G   
Sbjct: 312 GPRAAVQRNLPVVAVVGRPNVGKSTLVNRILGRREAVVEDRPGVTRDRVFYEAEWTGKDF 371

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NID 321
            + DT G  +    +     ++  + V  AD++L + + N     +  +        N+ 
Sbjct: 372 WLVDTGGWEDRVQGIAYRVAEQAEVAVSLADVVLFIVDANVGVTTTDEQLLKVLRKANVP 431

Query: 322 FIFIGTKSDLYSTYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFK 367
            + +  K D      E            H +S+  G G  +L++ + + +  + +
Sbjct: 432 IVLVANKVDDQRGELEAAALWNLGLGEPHAVSALHGRGSGDLLDAVVAAMPEEGR 486


>gi|226312035|ref|YP_002771929.1| GTP-binding protein EngA [Brevibacillus brevis NBRC 100599]
 gi|254783139|sp|C0ZCB6|DER_BREBN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226094983|dbj|BAH43425.1| GTP-binding protein EngA [Brevibacillus brevis NBRC 100599]
          Length = 437

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD +    + +     + DTAG+R+ 
Sbjct: 178 RVSIIGRPNVGKSSLTNAILGEERVIVSEVAGTTRDAIDTPFERDDQSYVLVDTAGMRKR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E++D++L++
Sbjct: 238 GKVYETTEKYSVMRAMRSIEDSDVVLVV 265



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS++FN L  + VAIV D+PG TRD L    +   +   + DT GI   E
Sbjct: 6   VAIVGRPNVGKSTIFNRLIGERVAIVEDMPGVTRDRLYGKGEWLTHTFHVIDTGGIEFGE 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE 307
           TD+I+ +   +   L ++ AD+I+++ +
Sbjct: 66  TDEILTQMRYQAE-LAIDEADVIIMIAD 92


>gi|125718602|ref|YP_001035735.1| GTP-binding protein EngA [Streptococcus sanguinis SK36]
 gi|166225867|sp|A3CPT0|DER_STRSV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|125498519|gb|ABN45185.1| GTP-binding protein, putative [Streptococcus sanguinis SK36]
          Length = 436

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  I + + GTTRD + T+  D EG    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361
            EYD  I+ F    G+G+  ++NK  ++
Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFV 89


>gi|313206833|ref|YP_004046010.1| ribosome-associated GTPase enga [Riemerella anatipestifer DSM
           15868]
 gi|312446149|gb|ADQ82504.1| ribosome-associated GTPase EngA [Riemerella anatipestifer DSM
           15868]
 gi|315023907|gb|EFT36909.1| GTP-binding protein EngA [Riemerella anatipestifer RA-YM]
 gi|325335727|gb|ADZ12001.1| Predicted GTPase [Riemerella anatipestifer RA-GD]
          Length = 435

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I G  N GKS+L NAL      IVTDI GTTRD +    +  G+   + DTAG+R+ 
Sbjct: 177 RITIAGRPNVGKSTLTNALLDNKRNIVTDIAGTTRDSIETIYNKFGHEFVLVDTAGMRKK 236

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
             + E      + R+   +E++D+++++
Sbjct: 237 SKVSENLEFYSVMRSVRAIEHSDVVVIM 264



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L ++  AIV  + G TRD      +  G    + DT G    T
Sbjct: 5   VAIVGRPNVGKSTLFNRLLERREAIVDSVAGVTRDRHYGKSEWNGVEFTVIDTGGYDVGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI E+E   +  L V+ A  I+ +
Sbjct: 65  DDIFEEEIRHQVQLAVDEATSIIFM 89


>gi|110633049|ref|YP_673257.1| GTP-binding protein EngA [Mesorhizobium sp. BNC1]
 gi|123162694|sp|Q11KI3|DER_MESSB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|110284033|gb|ABG62092.1| small GTP-binding protein [Chelativorans sp. BNC1]
          Length = 470

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 18/157 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  N GKS+LFN L  + +A+V D PG TRD       L      + DTAG+ E
Sbjct: 3   FKVAIVGRPNVGKSTLFNRLVGRRIALVDDTPGVTRDRRVHSARLLDLRFDVIDTAGLEE 62

Query: 280 TDDIVEKEGIK-RTFLEVENADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSD 330
                    ++ +T   ++ ADL+L        L+ +  +  E+   K    + +  K+D
Sbjct: 63  AAAPTLAGRMRAQTETAIDEADLVLFMIDARAGLMPDDRAFAEVVRRKGKPVVLVANKTD 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
           +  T     +           +S+  G+G+ EL + I
Sbjct: 123 VRGTDAGVLEAFALGLGDPVAVSAEHGQGMVELRDAI 159



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS+L NAL  ++  +     G TRD +++D    G  +K+ DTAG+R  
Sbjct: 200 RIAVVGRPNVGKSTLINALIGEERLLTGPEAGITRDSISVDWHWRGREIKLFDTAGMRRK 259

Query: 281 DDIVEK 286
             + EK
Sbjct: 260 ARVQEK 265


>gi|315452739|ref|YP_004073009.1| GTP-binding protein engA [Helicobacter felis ATCC 49179]
 gi|315131791|emb|CBY82419.1| GTP-binding protein engA [Helicobacter felis ATCC 49179]
          Length = 435

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 2/91 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL +++ A+V+++ GTT D +   +   G  +   DTAG+R+ 
Sbjct: 178 QVGIIGRVNVGKSSLLNALVQQERALVSEVAGTTIDPVDQHISHHGQEICFVDTAGLRQR 237

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEIN 309
             I  +EK  + RT   +E + + +L+ +++
Sbjct: 238 SKIQGLEKYALDRTTKVLEQSQIAILVLDVS 268



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSLFN L K   AI +   GTTRD+    + L G  V++ DT G+ +  
Sbjct: 4   IALVGRPNVGKSSLFNCLVKSRQAITSAFAGTTRDIRQGVVSLGGVFVQLLDTGGL-DPG 62

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +  +  K +   ++  DL+  +
Sbjct: 63  HALGTQITKHSLETIQKCDLVFYV 86


>gi|254796894|ref|YP_003081731.1| putative GTP-binding protein EngA [Neorickettsia risticii str.
           Illinois]
 gi|254590130|gb|ACT69492.1| putative GTP-binding protein EngA [Neorickettsia risticii str.
           Illinois]
          Length = 480

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ I+G +N GKS+LFN +A++  +I  D  G TRDV+   + L EG    + DTAG  
Sbjct: 12  FRVSIVGKANVGKSTLFNKMAREKRSITMDRKGVTRDVVVRKISLNEGKSFLLLDTAGFN 71

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL--KEINSKKEI--SFPK----NIDFIFIGTKSD 330
                   E ++RT   ++ +D+IL +   +I+S+  +  S+ +    N   + +  KSD
Sbjct: 72  PQ----HPETVERTEYAIKESDMILFVIDNKIDSEDMLFASWLRRNAGNSKIVLVCNKSD 127

Query: 331 L-----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                  S +  +   LIS+    GL ELI+ I+S +  + 
Sbjct: 128 RKDRDDCSLFGFQNVFLISAEHSLGLSELISYIESFIPEQL 168



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ILG  N GKSSL N    KD  +V  I GTTRD ++ +   +    ++ DTAG+R+ 
Sbjct: 182 RVSILGQPNVGKSSLMNKFIGKDRVLVLPIAGTTRDPISDEFQWKCTTFELVDTAGLRKK 241

Query: 281 D---DIVEKEGIKRTFLEVENADLILLLKEINS 310
               D +EK    R       +D+++ + +I++
Sbjct: 242 QRVTDGLEKICNSRALRTSAESDVVIFMCDISN 274


>gi|26249489|ref|NP_755529.1| hypothetical protein c3654 [Escherichia coli CFT073]
 gi|26109897|gb|AAN82102.1|AE016766_190 Hypothetical protein yeeP [Escherichia coli CFT073]
 gi|47600677|emb|CAE55799.1| hypothetical protein YeeP [Escherichia coli Nissle 1917]
 gi|307555015|gb|ADN47790.1| putative GTPase [Escherichia coli ABU 83972]
          Length = 290

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   GY + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGYSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|209525601|ref|ZP_03274139.1| small GTP-binding protein [Arthrospira maxima CS-328]
 gi|209493934|gb|EDZ94251.1| small GTP-binding protein [Arthrospira maxima CS-328]
          Length = 222

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N   + ++G  N GKS LFNAL     A V++ PGTT D+ T D+ +    + I DT 
Sbjct: 36  VSNKPTVALVGSPNVGKSVLFNALTSH-YATVSNYPGTTVDISTGDMIIGDKAIAIIDTP 94

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI--GTKSDLYS 333
           G+     I E+E + R  L     DL++    + + + +    N+    +  G    L  
Sbjct: 95  GMYSLLPITEEEKVGRDLLMTRGIDLVI---HVVNAQHLGRMLNLTLQLLEAGLPVLLAV 151

Query: 334 TYTEEYDHLISSFTGEGLEE 353
              +E DHL      E LEE
Sbjct: 152 NLIDEADHLGIKINAEDLEE 171


>gi|83590125|ref|YP_430134.1| small GTP-binding protein domain-containing protein [Moorella
           thermoacetica ATCC 39073]
 gi|83573039|gb|ABC19591.1| iron-only hydrogenase maturation protein HydF [Moorella
           thermoacetica ATCC 39073]
          Length = 405

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 8/92 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTA 275
           N   I I G  NAGKSSL NAL  +D+A+V+ +PGTT D +   +++   G +V I DTA
Sbjct: 8   NRLHIAIFGRRNAGKSSLINALTNQDLAVVSSVPGTTTDPVMKSMEILPLGPVVLI-DTA 66

Query: 276 GIRETDDIVE--KEGIKRTFLEVENADLILLL 305
           GI   DD+ E     +K+T   +   DL +L+
Sbjct: 67  GI---DDVGELGTLRVKKTMEVLRRTDLAILV 95


>gi|92114975|ref|YP_574903.1| small GTP-binding protein protein [Chromohalobacter salexigens DSM
           3043]
 gi|123387342|sp|Q1QTK4|DER_CHRSD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|91798065|gb|ABE60204.1| Small GTP-binding protein protein [Chromohalobacter salexigens DSM
           3043]
          Length = 467

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG +I ++G  N GKS+L N L  +D  +V D  GTTRD + I  +  G    + DTAG+
Sbjct: 176 NGIRIGVIGRPNVGKSTLVNRLLGEDRVVVYDEAGTTRDAIEIPFERRGKPYVLVDTAGV 235

Query: 278 RETDDIVE 285
           R   ++ E
Sbjct: 236 RRRKNVSE 243



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD    +  L      + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGNGVLGDKTYTVIDTGGISGNE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++    +++ L ++ AD++L +
Sbjct: 65  EGLDAAMAEQSLLAIDEADIVLFM 88


>gi|302038214|ref|YP_003798536.1| GTP-binding protein Era-like protein [Candidatus Nitrospira
           defluvii]
 gi|300606278|emb|CBK42611.1| GTP-binding protein Era homolog [Candidatus Nitrospira defluvii]
          Length = 294

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G SN GKS+L N L K+ +AIV+D P TTR  +     +EG  +   DT G  E  
Sbjct: 6   VAIIGRSNVGKSTLLNRLLKEKIAIVSDKPQTTRTRILGVAHVEGAQIVFLDTPGFHEPH 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
            ++ +  ++ T    ++AD++ ++ E  ++
Sbjct: 66  HLLNRRMVRTTLDTFDDADVLYVVVEATAQ 95


>gi|296269475|ref|YP_003652107.1| small GTP-binding protein [Thermobispora bispora DSM 43833]
 gi|296092262|gb|ADG88214.1| small GTP-binding protein [Thermobispora bispora DSM 43833]
          Length = 476

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   ++ ++G  N GKSSL N +A ++  +V  +PGTTRD +   ++L G   +  DTAG
Sbjct: 210 RGPRRVALVGRPNVGKSSLLNRMAGEERVLVDPMPGTTRDPVDELIELGGKTYRFVDTAG 269

Query: 277 IRETD 281
           IR  D
Sbjct: 270 IRRRD 274



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  +   +G    + DT G
Sbjct: 41  VAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYEASWQGRRFTLVDTGG 95


>gi|148255174|ref|YP_001239759.1| GTP-binding protein EngA [Bradyrhizobium sp. BTAi1]
 gi|166224309|sp|A5EI59|DER_BRASB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|146407347|gb|ABQ35853.1| GTP-binding protein, essential for cell growth [Bradyrhizobium sp.
           BTAi1]
          Length = 456

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 29/179 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N L  ++  + +   GTTRD + ++++ +G   +I DTAG+R  
Sbjct: 186 RVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTRDSIAVEIEYKGRGFRIFDTAGLRRR 245

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI-------------- 323
             I   +EK  +      V  A++++L+ +  ++ E    +  D I              
Sbjct: 246 SRIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRFEEQDLRIADLIEREGRALVIAVNKW 305

Query: 324 -FIGTKSDLYSTYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLP 370
             + +K    S    + DH            +S   GEG++ L+  I    +   +++P
Sbjct: 306 DLMESKPGQISALRHDVDHWLPQVSGVPIVAVSGLMGEGIDRLMQAIVESYAVWNRRVP 364



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I I+G  N GKS+LFN L  + +A+V D+PG TRD    +  L      I DTAG+
Sbjct: 3   FTIAIIGRPNVGKSTLFNRLVGQKLALVDDMPGVTRDRREGEAKLGDLQFTIIDTAGL 60


>gi|329946748|ref|ZP_08294160.1| ribosome biogenesis GTPase Der [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526559|gb|EGF53572.1| ribosome biogenesis GTPase Der [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 719

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 11/122 (9%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S EVL+ ++ +  ++S+  +    G++    +++ ++G  N GKSSL N++A ++  +V 
Sbjct: 431 SGEVLDAVMEVLPEVSAVATAAPEGDL----HRVALVGRPNVGKSSLLNSIAGRERVVVN 486

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG-----IKRTFLEVENADLIL 303
           +  GTTRD +   ++L+G      DTAGIR    + +  G     + RT   ++ A++++
Sbjct: 487 ETAGTTRDPVDEIIELDGRQWVFVDTAGIRRR--VKQSRGADYYAVLRTQGAIDKAEVVV 544

Query: 304 LL 305
           +L
Sbjct: 545 VL 546



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 3/128 (2%)

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKL--GEIIRNGYKIV-ILGHSNAGKSSLFN 237
           EED++  + +E L D    + D++   + G L  G+ +  G  ++ ++G  N GKS+L N
Sbjct: 241 EEDLRARAMREGLGDYELDEEDLALLDADGGLPAGDSVEPGLPVLAVVGRPNVGKSTLVN 300

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            +  +  A+V D PG TRD ++   +  G    I DT G       ++     +  + VE
Sbjct: 301 RVLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVDVAGLDAAVATQAEVAVE 360

Query: 298 NADLILLL 305
            AD +LL+
Sbjct: 361 MADAVLLV 368


>gi|322392688|ref|ZP_08066148.1| ribosome-associated GTPase EngA [Streptococcus peroris ATCC 700780]
 gi|321144680|gb|EFX40081.1| ribosome-associated GTPase EngA [Streptococcus peroris ATCC 700780]
          Length = 436

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372
            EYD  I+ F    G+G+  ++NK  ++             +  +F+ LP++
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEDDIREQFQYLPYA 323



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFV 89


>gi|325571137|ref|ZP_08146709.1| ribosome-associated GTPase EngA [Enterococcus casseliflavus ATCC
           12755]
 gi|325156222|gb|EGC68408.1| ribosome-associated GTPase EngA [Enterococcus casseliflavus ATCC
           12755]
          Length = 436

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      E G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSESGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    +E +D++L++
Sbjct: 236 KGKVYESTEKYSVMRAMRAIERSDVVLMV 264



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + ++ AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIVFI 89


>gi|225021514|ref|ZP_03710706.1| hypothetical protein CORMATOL_01535 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945896|gb|EEG27105.1| hypothetical protein CORMATOL_01535 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 484

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 6/89 (6%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           +VL++IL       S   Q +   I     ++ ++G  N GKSSL N +A ++ ++V D+
Sbjct: 201 DVLDEIL------RSFPDQPRQPSITEGPRRVALVGKPNVGKSSLLNKIAGEERSVVDDV 254

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            GTT D +   + L+G+L K  DTAG+R+
Sbjct: 255 AGTTVDPVDSLVQLDGHLWKFIDTAGLRK 283



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD ++   D  G    + DT G     
Sbjct: 53  VAIVGRPNVGKSTLVNRFLGRREAVVEDFPGVTRDRISYIADWGGQRFWVQDTGGWDPNV 112

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++    +E AD+I+++
Sbjct: 113 KGIHGAIARQAETAMETADVIVMV 136


>gi|30019652|ref|NP_831283.1| GTP-binding protein EngA [Bacillus cereus ATCC 14579]
 gi|30261599|ref|NP_843976.1| GTP-binding protein EngA [Bacillus anthracis str. Ames]
 gi|47526799|ref|YP_018148.1| GTP-binding protein EngA [Bacillus anthracis str. 'Ames Ancestor']
 gi|47565966|ref|ZP_00237004.1| GTP-binding protein, Era/ThdF family [Bacillus cereus G9241]
 gi|49184431|ref|YP_027683.1| GTP-binding protein EngA [Bacillus anthracis str. Sterne]
 gi|49477254|ref|YP_035720.1| GTP-binding protein EngA [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52143844|ref|YP_082984.1| GTP-binding protein EngA [Bacillus cereus E33L]
 gi|65318869|ref|ZP_00391828.1| COG1160: Predicted GTPases [Bacillus anthracis str. A2012]
 gi|118477058|ref|YP_894209.1| GTP-binding protein EngA [Bacillus thuringiensis str. Al Hakam]
 gi|165869461|ref|ZP_02214120.1| GTPase family protein [Bacillus anthracis str. A0488]
 gi|167633435|ref|ZP_02391760.1| GTPase family protein [Bacillus anthracis str. A0442]
 gi|167639189|ref|ZP_02397462.1| GTPase family protein [Bacillus anthracis str. A0193]
 gi|170686176|ref|ZP_02877398.1| GTPase family protein [Bacillus anthracis str. A0465]
 gi|170706475|ref|ZP_02896935.1| GTPase family protein [Bacillus anthracis str. A0389]
 gi|177650444|ref|ZP_02933411.1| GTPase family protein [Bacillus anthracis str. A0174]
 gi|190568605|ref|ZP_03021510.1| ribosome-associated GTPase EngA [Bacillus anthracis Tsiankovskii-I]
 gi|196033560|ref|ZP_03100972.1| ribosome-associated GTPase EngA [Bacillus cereus W]
 gi|196038987|ref|ZP_03106294.1| ribosome-associated GTPase EngA [Bacillus cereus NVH0597-99]
 gi|196046647|ref|ZP_03113871.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB108]
 gi|206970720|ref|ZP_03231672.1| ribosome-associated GTPase EngA [Bacillus cereus AH1134]
 gi|206974925|ref|ZP_03235840.1| ribosome-associated GTPase EngA [Bacillus cereus H3081.97]
 gi|217959081|ref|YP_002337629.1| GTP-binding protein EngA [Bacillus cereus AH187]
 gi|218231181|ref|YP_002366284.1| GTP-binding protein EngA [Bacillus cereus B4264]
 gi|218902715|ref|YP_002450549.1| ribosome-associated GTPase EngA [Bacillus cereus AH820]
 gi|222095233|ref|YP_002529293.1| gtp-binding protein enga [Bacillus cereus Q1]
 gi|225863467|ref|YP_002748845.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB102]
 gi|227815649|ref|YP_002815658.1| ribosome-associated GTPase EngA [Bacillus anthracis str. CDC 684]
 gi|228914177|ref|ZP_04077795.1| GTP-binding protein engA [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228920314|ref|ZP_04083661.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228926634|ref|ZP_04089703.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932889|ref|ZP_04095756.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228945203|ref|ZP_04107559.1| GTP-binding protein engA [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228951980|ref|ZP_04114077.1| GTP-binding protein engA [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228957879|ref|ZP_04119619.1| GTP-binding protein engA [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228984682|ref|ZP_04144855.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229043348|ref|ZP_04191066.1| GTP-binding protein engA [Bacillus cereus AH676]
 gi|229069156|ref|ZP_04202447.1| GTP-binding protein engA [Bacillus cereus F65185]
 gi|229078786|ref|ZP_04211339.1| GTP-binding protein engA [Bacillus cereus Rock4-2]
 gi|229090565|ref|ZP_04221800.1| GTP-binding protein engA [Bacillus cereus Rock3-42]
 gi|229109059|ref|ZP_04238659.1| GTP-binding protein engA [Bacillus cereus Rock1-15]
 gi|229121146|ref|ZP_04250383.1| GTP-binding protein engA [Bacillus cereus 95/8201]
 gi|229126917|ref|ZP_04255928.1| GTP-binding protein engA [Bacillus cereus BDRD-Cer4]
 gi|229138297|ref|ZP_04266892.1| GTP-binding protein engA [Bacillus cereus BDRD-ST26]
 gi|229144202|ref|ZP_04272616.1| GTP-binding protein engA [Bacillus cereus BDRD-ST24]
 gi|229149801|ref|ZP_04278030.1| GTP-binding protein engA [Bacillus cereus m1550]
 gi|229155169|ref|ZP_04283281.1| GTP-binding protein engA [Bacillus cereus ATCC 4342]
 gi|229178011|ref|ZP_04305383.1| GTP-binding protein engA [Bacillus cereus 172560W]
 gi|229183798|ref|ZP_04311015.1| GTP-binding protein engA [Bacillus cereus BGSC 6E1]
 gi|229189685|ref|ZP_04316699.1| GTP-binding protein engA [Bacillus cereus ATCC 10876]
 gi|229195804|ref|ZP_04322564.1| GTP-binding protein engA [Bacillus cereus m1293]
 gi|229602142|ref|YP_002866007.1| ribosome-associated GTPase EngA [Bacillus anthracis str. A0248]
 gi|254683091|ref|ZP_05146952.1| GTP-binding protein EngA [Bacillus anthracis str. CNEVA-9066]
 gi|254723679|ref|ZP_05185465.1| GTP-binding protein EngA [Bacillus anthracis str. A1055]
 gi|254734440|ref|ZP_05192152.1| GTP-binding protein EngA [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740851|ref|ZP_05198539.1| GTP-binding protein EngA [Bacillus anthracis str. Kruger B]
 gi|254755089|ref|ZP_05207123.1| GTP-binding protein EngA [Bacillus anthracis str. Vollum]
 gi|254759626|ref|ZP_05211650.1| GTP-binding protein EngA [Bacillus anthracis str. Australia 94]
 gi|296502173|ref|YP_003663873.1| GTP-binding protein EngA [Bacillus thuringiensis BMB171]
 gi|300117468|ref|ZP_07055258.1| GTP-binding protein EngA [Bacillus cereus SJ1]
 gi|301053141|ref|YP_003791352.1| GTP-binding protein EngA [Bacillus anthracis CI]
 gi|37999522|sp|Q81FR5|DER_BACCR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|37999526|sp|Q81SW9|DER_BACAN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|81824337|sp|Q63DM8|DER_BACCZ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|81828346|sp|Q6HL51|DER_BACHK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166224305|sp|A0RBV9|DER_BACAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226741128|sp|B7JGY9|DER_BACC0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226741130|sp|B7HHQ7|DER_BACC4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226741131|sp|B7HL14|DER_BACC7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783135|sp|C3P591|DER_BACAA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783136|sp|C3L9F4|DER_BACAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783137|sp|C1EN01|DER_BACC3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783138|sp|B9IVM6|DER_BACCQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|29895196|gb|AAP08484.1| GTP-binding protein [Bacillus cereus ATCC 14579]
 gi|30255453|gb|AAP25462.1| ribosome-associated GTPase EngA [Bacillus anthracis str. Ames]
 gi|47501947|gb|AAT30623.1| GTPase family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|47556883|gb|EAL15213.1| GTP-binding protein, Era/ThdF family [Bacillus cereus G9241]
 gi|49178358|gb|AAT53734.1| GTPase family protein [Bacillus anthracis str. Sterne]
 gi|49328810|gb|AAT59456.1| GTP-binding protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51977313|gb|AAU18863.1| GTP-binding protein [Bacillus cereus E33L]
 gi|118416283|gb|ABK84702.1| GTP-binding protein [Bacillus thuringiensis str. Al Hakam]
 gi|164714901|gb|EDR20419.1| GTPase family protein [Bacillus anthracis str. A0488]
 gi|167512979|gb|EDR88352.1| GTPase family protein [Bacillus anthracis str. A0193]
 gi|167531473|gb|EDR94151.1| GTPase family protein [Bacillus anthracis str. A0442]
 gi|170128573|gb|EDS97440.1| GTPase family protein [Bacillus anthracis str. A0389]
 gi|170669873|gb|EDT20614.1| GTPase family protein [Bacillus anthracis str. A0465]
 gi|172083588|gb|EDT68648.1| GTPase family protein [Bacillus anthracis str. A0174]
 gi|190560205|gb|EDV14185.1| ribosome-associated GTPase EngA [Bacillus anthracis Tsiankovskii-I]
 gi|195993994|gb|EDX57950.1| ribosome-associated GTPase EngA [Bacillus cereus W]
 gi|196022580|gb|EDX61263.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB108]
 gi|196030132|gb|EDX68732.1| ribosome-associated GTPase EngA [Bacillus cereus NVH0597-99]
 gi|206734356|gb|EDZ51526.1| ribosome-associated GTPase EngA [Bacillus cereus AH1134]
 gi|206746944|gb|EDZ58336.1| ribosome-associated GTPase EngA [Bacillus cereus H3081.97]
 gi|217067748|gb|ACJ81998.1| ribosome-associated GTPase EngA [Bacillus cereus AH187]
 gi|218159138|gb|ACK59130.1| ribosome-associated GTPase EngA [Bacillus cereus B4264]
 gi|218536841|gb|ACK89239.1| ribosome-associated GTPase EngA [Bacillus cereus AH820]
 gi|221239291|gb|ACM12001.1| GTP-binding protein [Bacillus cereus Q1]
 gi|225788315|gb|ACO28532.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB102]
 gi|227004060|gb|ACP13803.1| ribosome-associated GTPase EngA [Bacillus anthracis str. CDC 684]
 gi|228587701|gb|EEK45759.1| GTP-binding protein engA [Bacillus cereus m1293]
 gi|228593734|gb|EEK51539.1| GTP-binding protein engA [Bacillus cereus ATCC 10876]
 gi|228599647|gb|EEK57250.1| GTP-binding protein engA [Bacillus cereus BGSC 6E1]
 gi|228605499|gb|EEK62948.1| GTP-binding protein engA [Bacillus cereus 172560W]
 gi|228628296|gb|EEK85011.1| GTP-binding protein engA [Bacillus cereus ATCC 4342]
 gi|228633665|gb|EEK90265.1| GTP-binding protein engA [Bacillus cereus m1550]
 gi|228639210|gb|EEK95626.1| GTP-binding protein engA [Bacillus cereus BDRD-ST24]
 gi|228645189|gb|EEL01426.1| GTP-binding protein engA [Bacillus cereus BDRD-ST26]
 gi|228656517|gb|EEL12344.1| GTP-binding protein engA [Bacillus cereus BDRD-Cer4]
 gi|228662265|gb|EEL17868.1| GTP-binding protein engA [Bacillus cereus 95/8201]
 gi|228674337|gb|EEL29581.1| GTP-binding protein engA [Bacillus cereus Rock1-15]
 gi|228692768|gb|EEL46492.1| GTP-binding protein engA [Bacillus cereus Rock3-42]
 gi|228704468|gb|EEL56901.1| GTP-binding protein engA [Bacillus cereus Rock4-2]
 gi|228713908|gb|EEL65792.1| GTP-binding protein engA [Bacillus cereus F65185]
 gi|228725996|gb|EEL77235.1| GTP-binding protein engA [Bacillus cereus AH676]
 gi|228775076|gb|EEM23469.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228801795|gb|EEM48672.1| GTP-binding protein engA [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228807705|gb|EEM54227.1| GTP-binding protein engA [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228814438|gb|EEM60703.1| GTP-binding protein engA [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228826810|gb|EEM72577.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833010|gb|EEM78578.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228839337|gb|EEM84631.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228845510|gb|EEM90543.1| GTP-binding protein engA [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229266550|gb|ACQ48187.1| ribosome-associated GTPase EngA [Bacillus anthracis str. A0248]
 gi|296323225|gb|ADH06153.1| GTP-binding protein EngA [Bacillus thuringiensis BMB171]
 gi|298725303|gb|EFI65955.1| GTP-binding protein EngA [Bacillus cereus SJ1]
 gi|300375310|gb|ADK04214.1| GTP-binding protein EngA [Bacillus cereus biovar anthracis str. CI]
 gi|324325620|gb|ADY20880.1| GTP-binding protein Der [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 436

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NAL  ++  IV+++ GTTRD +      +G    I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D++L++
Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +  ++  + ++ AD+I+ +
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFM 89


>gi|224438499|ref|ZP_03659419.1| GTP-binding protein EngA [Helicobacter cinaedi CCUG 18818]
 gi|313144927|ref|ZP_07807120.1| GTP-binding protein engA [Helicobacter cinaedi CCUG 18818]
 gi|313129958|gb|EFR47575.1| GTP-binding protein engA [Helicobacter cinaedi CCUG 18818]
          Length = 527

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L K+ +AI +++ GTTRDV     ++ G  V++ DT G+ +  
Sbjct: 4   IAILGKPNVGKSSLFNRLIKQHLAITSNVSGTTRDVKKACFEISGVDVELIDTGGLDKAQ 63

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            +  K   + +      ADL+L +
Sbjct: 64  GLFAKVS-ENSLKAGAEADLVLYM 86



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL NAL  K+ ++V+++ GTT D +    ++ G  V+  DTAGIR +  I
Sbjct: 211 IIGRVNVGKSSLLNALLGKERSVVSEVAGTTIDPVDETGEILGQKVRFVDTAGIRRSSKI 270

Query: 284 --VEKEGIKRTFLEVENADLILLL 305
             +EK  + RT   +  + + +L+
Sbjct: 271 LGIEKFALDRTNKALAQSHIAILV 294


>gi|94676730|ref|YP_588490.1| GTP-binding protein EngA [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|166224308|sp|Q1LU74|DER_BAUCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|94219880|gb|ABF14039.1| GTP-binding protein EngA [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 472

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G SN GKS+L N+   ++  +V D+PGTTRD   I +        + DTAG+R+ 
Sbjct: 189 KLAIVGSSNVGKSTLANSFLGEERVVVFDMPGTTRDSTYIPMIRAEREYVLIDTAGLRKR 248

Query: 281 D---DIVEKEGIKRTFLEVENADLILLL 305
               DI EK    +T   +E ++++LL+
Sbjct: 249 SKITDIAEKLSTVKTLQSIEESNVVLLV 276



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L   + AIV D  G TRD        + Y   + DT GI  + 
Sbjct: 5   IALVGRPNVGKSTLFNKLTHTNDAIVADYSGLTRDRKYGHAKWKNYNFIVIDTGGIGISK 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +    IK++ L ++ AD+I  +
Sbjct: 65  KGLAIHIIKQSLLAIKEADVIFFV 88


>gi|77164340|ref|YP_342865.1| small GTP-binding protein domain-containing protein [Nitrosococcus
           oceani ATCC 19707]
 gi|254434862|ref|ZP_05048370.1| GTPase, putative [Nitrosococcus oceani AFC27]
 gi|123757906|sp|Q3JCW1|DER_NITOC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|76882654|gb|ABA57335.1| Small GTP-binding domain protein [Nitrosococcus oceani ATCC 19707]
 gi|207091195|gb|EDZ68466.1| GTPase, putative [Nitrosococcus oceani AFC27]
          Length = 464

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI   G +  ++G  N GKS+L N +  ++  + ++IPGTTRD ++I     G    + D
Sbjct: 171 EIQAKGLQFAVIGRPNVGKSTLVNRILGEERVLSSEIPGTTRDSISIPFRHHGKDYTLVD 230

Query: 274 TAGIRETD---DIVEKEGIKRTFLEVENADLILLL 305
           TAGIR      D VEK  + ++   +  A +++L+
Sbjct: 231 TAGIRRRSRILDKVEKFSVIQSLQSIAIAQVVILV 265



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 6/87 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK---ISDTAGIR 278
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  Y  +   + DT G+ 
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVVDQPGVTRDR---KYGLAHYGEQSFFVVDTGGVM 61

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           E +  + +    +  L +E AD+I  L
Sbjct: 62  EQESGIGRLMRAQAQLAIEEADVIFFL 88


>gi|39997324|ref|NP_953275.1| GTP-binding protein Era [Geobacter sulfurreducens PCA]
 gi|39984215|gb|AAR35602.1| GTP-binding protein Era [Geobacter sulfurreducens PCA]
 gi|298506261|gb|ADI84984.1| GTP-binding protein Era [Geobacter sulfurreducens KN400]
          Length = 299

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N +  + + I +D P TTR+ +    +L G  +   DT G
Sbjct: 8   RSGF-VSIIGRPNVGKSTLLNRILGEKIVITSDKPQTTRNRIQGIHNLPGAQIVFIDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS--FPK-NIDFIFIGTK 328
           I      + K  ++     +   DL++LL E N      ++EI+   P  N+    +  K
Sbjct: 67  IHHARSRLNKFMVEEALSSIREVDLVMLLVEANRAPGDQEREIAGLLPSVNVPVFLVVNK 126

Query: 329 SDL---------YSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL          + Y E +       +S+ TGE +E L+  ++  L       P  I +
Sbjct: 127 IDLIDPDILAERLTAYAELFPFREVVPVSAETGENVERLVEVVRDTLPEGPVYFPDDILT 186

Query: 376 HKRHLYHLSQTVR 388
                + +++ VR
Sbjct: 187 DLPERFIVAEIVR 199


>gi|306829944|ref|ZP_07463131.1| ribosome-associated GTPase EngA [Streptococcus mitis ATCC 6249]
 gi|304427955|gb|EFM31048.1| ribosome-associated GTPase EngA [Streptococcus mitis ATCC 6249]
          Length = 436

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372
            EYD  I+ F    G+G+  ++NK  ++             +  +F+ LP++
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 323



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFV 89


>gi|94266754|ref|ZP_01290422.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [delta proteobacterium MLMS-1]
 gi|94270658|ref|ZP_01291794.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [delta proteobacterium MLMS-1]
 gi|93450717|gb|EAT01793.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [delta proteobacterium MLMS-1]
 gi|93452576|gb|EAT03153.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [delta proteobacterium MLMS-1]
          Length = 299

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 23/196 (11%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +I  G+ + ++G  NAGKS+L N L  + +AIVT  P TTR+ +   ++   Y + + DT
Sbjct: 8   VISCGF-VALIGAPNAGKSTLLNRLLGQKIAIVTPKPQTTRNRILGVVNHRDYQMVLLDT 66

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID---------FIFI 325
            G+    + +  E ++         D++  L +++S+ E    ++            + +
Sbjct: 67  PGLHRAKNRLNSEMVRLARNAAGEVDVVAYLVDVSSETEAEQRRHAQKLLREAGKPALLL 126

Query: 326 GTKSD---------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           G K D         L + + E Y       +S+ TGEG +  + +   +L    +  P  
Sbjct: 127 GNKIDRIGKEKLLPLIAAWQEVYPFQAIIPLSALTGEGCQLFLTEASRLLPTGPRLFPED 186

Query: 373 IPSHKRHLYHLSQTVR 388
           IP+     +   + +R
Sbjct: 187 IPTDASERFICGEIIR 202


>gi|305681382|ref|ZP_07404189.1| ribosome-associated GTPase EngA [Corynebacterium matruchotii ATCC
           14266]
 gi|305659587|gb|EFM49087.1| ribosome-associated GTPase EngA [Corynebacterium matruchotii ATCC
           14266]
          Length = 484

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 6/89 (6%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           +VL++IL       S   Q +   I     ++ ++G  N GKSSL N +A ++ ++V D+
Sbjct: 201 DVLDEIL------RSFPDQPRQPSITEGPRRVALVGKPNVGKSSLLNKIAGEERSVVDDV 254

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            GTT D +   + L+G+L K  DTAG+R+
Sbjct: 255 AGTTVDPVDSLVQLDGHLWKFIDTAGLRK 283



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD ++   D  G    + DT G     
Sbjct: 53  VTIVGRPNVGKSTLVNRFLGRREAVVEDFPGVTRDRISYIADWGGQRFWVQDTGGWDPNV 112

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++    +E AD+I+++
Sbjct: 113 KGIHGAIARQAETAMETADVIVMV 136


>gi|239636852|ref|ZP_04677851.1| ribosome-associated GTPase EngA [Staphylococcus warneri L37603]
 gi|239597526|gb|EEQ80024.1| ribosome-associated GTPase EngA [Staphylococcus warneri L37603]
          Length = 436

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD +  +   +G    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSFDGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + +E AD+I+ +
Sbjct: 66  APFQTQIRAQAEIAIEEADVIVFM 89


>gi|255521525|ref|ZP_05388762.1| GTP-binding protein EngA [Listeria monocytogenes FSL J1-175]
          Length = 259

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + +H  + +  E   +  K  ++G  N GKSS+ NAL  +D  IV+DI GTTRD +    
Sbjct: 159 VRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTY 218

Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENAD 300
             +G    + DTAG+R+   +    EK  + R    +E +D
Sbjct: 219 TFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSD 259



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++   +  + ++ AD+I+ +
Sbjct: 66  EPFLEQIRAQAEIAIDEADVIIFI 89


>gi|229160554|ref|ZP_04288549.1| GTP-binding protein engA [Bacillus cereus R309803]
 gi|228622964|gb|EEK79795.1| GTP-binding protein engA [Bacillus cereus R309803]
          Length = 438

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NAL  ++  IV+++ GTTRD +      +G    I DTAG+R+   +
Sbjct: 182 LIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV 241

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D++L++
Sbjct: 242 YESTEKYSVLRALRAIERSDVVLVV 266



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    D   +   I DT GI   D
Sbjct: 8   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGDWLNHEFNIIDTGGIDIGD 67

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +  ++  + ++ AD+I+ +
Sbjct: 68  EPFLTQIRQQAEVAIDEADVIIFM 91


>gi|224476594|ref|YP_002634200.1| GTP-binding protein EngA [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254783167|sp|B9DNV9|DER_STACT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|222421201|emb|CAL28015.1| putative GTP-binding protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 436

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKSSL NA+  +D  IV++I GTTRD +  +   E     + DTAG+R+ 
Sbjct: 177 KLSLIGRPNVGKSSLVNAILGEDRVIVSNIAGTTRDAIDTEYSYEDQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 25/165 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   + DT GI  TD
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNVIDTGGIELTD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDL 331
              + +   +  + ++ AD+I+ +  +N ++ ++          +  N   +    K D 
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFM--VNQREGLTQTDEMIAQMLYKTNKPVVLAVNKVDN 123

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFK 367
               T+ YD           IS   G GL +L++++    +N FK
Sbjct: 124 PEMRTDIYDFYALGFGEPFPISGSHGLGLGDLLDEV----ANNFK 164


>gi|301025019|ref|ZP_07188619.1| small GTP-binding protein [Escherichia coli MS 69-1]
 gi|300396258|gb|EFJ79796.1| small GTP-binding protein [Escherichia coli MS 69-1]
          Length = 290

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   GY + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGYSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|197303809|ref|ZP_03168845.1| hypothetical protein RUMLAC_02548 [Ruminococcus lactaris ATCC
           29176]
 gi|197297102|gb|EDY31666.1| hypothetical protein RUMLAC_02548 [Ruminococcus lactaris ATCC
           29176]
          Length = 417

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 37/172 (21%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRETDD 282
            G  NAGKSS+ NA+  +++A+V+++ GTT D +   ++L   G +V I DT GI + D 
Sbjct: 17  FGCRNAGKSSIVNAVTGQNLAVVSNVKGTTTDPVVKAMELLPAGPVVMI-DTPGI-DDDG 74

Query: 283 IVEKEGIKRTFLEVENADLIL---------------LLKEINSKKEISFPKNIDFIFIGT 327
            + K  +++++  +   DL +               LLKEI  +K       + FI    
Sbjct: 75  ELGKLRVEKSYQMLNRTDLAIVVIDGGTGIKKEDFALLKEIEKRK-------VPFIIAVN 127

Query: 328 KSDLYSTY----------TEEYDHLISSFTGEGLEELINKI-KSILSNKFKK 368
           KSDL   +           EE    +S+ TGEG+ EL  +I +SI + K KK
Sbjct: 128 KSDLLKEHRIQSKGRGKVPEESLIYVSAETGEGIRELKKRIGESICTEKNKK 179


>gi|194246522|ref|YP_002004161.1| GTP-binding protein EngA [Candidatus Phytoplasma mali]
 gi|193806879|emb|CAP18308.1| conserved hypothetical protein [Candidatus Phytoplasma mali]
          Length = 441

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            +K+ I+G  N GKSS+FN + KK ++IV D PG TRD +    D       I DT GI 
Sbjct: 2   NFKVAIVGRPNVGKSSIFNRILKKRLSIVHDKPGITRDRIYAQADWLTKSFDIIDTGGIE 61

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
             +    K+   +  L ++ A+LIL +
Sbjct: 62  IKNTPFLKQIKYQVQLAIDEANLILFV 88



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  +LG  N GKS+L N +  ++  +V+DI GTT D +         + ++ DTAGI++ 
Sbjct: 175 KFCLLGRPNVGKSTLTNMILSQERMVVSDIAGTTTDAVDTFFQKGEKIYQVIDTAGIKKR 234

Query: 281 DDIVEKE 287
             I EKE
Sbjct: 235 GKIYEKE 241


>gi|148543995|ref|YP_001271365.1| GTP-binding protein EngA [Lactobacillus reuteri DSM 20016]
 gi|184153389|ref|YP_001841730.1| GTP-binding protein EngA [Lactobacillus reuteri JCM 1112]
 gi|194467923|ref|ZP_03073909.1| small GTP-binding protein [Lactobacillus reuteri 100-23]
 gi|166920101|sp|A5VJK4|DER_LACRD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|229784134|sp|B2G718|DER_LACRJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|148531029|gb|ABQ83028.1| small GTP-binding protein [Lactobacillus reuteri DSM 20016]
 gi|183224733|dbj|BAG25250.1| GTP-binding protein [Lactobacillus reuteri JCM 1112]
 gi|194452776|gb|EDX41674.1| small GTP-binding protein [Lactobacillus reuteri 100-23]
          Length = 437

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 21/156 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 6   VAVVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKHFSMIDTGGIEISD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK----- 328
             +  +  ++  + ++ AD+I+ + ++ +           I +  N   +    K     
Sbjct: 66  QPLLTQIRQQAEIAIDEADVIIFVADVENGVTDADEQVARILYRSNKPVVLAVNKVDNPE 125

Query: 329 --SDLYSTYT----EEYDHLISSFTGEGLEELINKI 358
             SD+Y  Y+    E Y   +SS  G G+ +L++ +
Sbjct: 126 RRSDIYDYYSLGLGEPY--AVSSVHGIGMGDLLDAV 159



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 4/85 (4%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDI 283
           +G  N GKSSL NA+  ++  IV+++ GTTRD +    +  +G    + DTAGIR+   I
Sbjct: 180 IGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINTQFETADGQKFTMVDTAGIRKKGKI 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E+  + R+   ++++D++L++
Sbjct: 240 YENTERYSLMRSMRAIDDSDVVLVV 264


>gi|322388795|ref|ZP_08062392.1| ribosome-associated GTPase EngA [Streptococcus infantis ATCC
           700779]
 gi|321140414|gb|EFX35922.1| ribosome-associated GTPase EngA [Streptococcus infantis ATCC
           700779]
          Length = 436

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372
            EYD  I+ F    G+G+  ++NK  ++             +  +F+ LP++
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 323



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +T + +E AD+I+ +
Sbjct: 66  APFMEQIKHQTEIAMEEADVIVFV 89


>gi|257873989|ref|ZP_05653642.1| GTP-binding protein engA [Enterococcus casseliflavus EC10]
 gi|257808153|gb|EEV36975.1| GTP-binding protein engA [Enterococcus casseliflavus EC10]
          Length = 436

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      E G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSESGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    +E +D++L++
Sbjct: 236 KGKVYESTEKYSVMRAMRAIERSDVVLMV 264



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + ++ AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIVFI 89


>gi|257869556|ref|ZP_05649209.1| GTP-binding protein engA [Enterococcus gallinarum EG2]
 gi|257803720|gb|EEV32542.1| GTP-binding protein engA [Enterococcus gallinarum EG2]
          Length = 436

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      E G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSENGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    +E +D++L++
Sbjct: 236 KGKVYESTEKYSVMRAMRAIERSDVVLMV 264



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSIIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + ++ AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIVFI 89


>gi|42780705|ref|NP_977952.1| GTP-binding protein EngA [Bacillus cereus ATCC 10987]
 gi|81831124|sp|Q73AZ1|DER_BACC1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|42736625|gb|AAS40560.1| GTPase family protein [Bacillus cereus ATCC 10987]
          Length = 436

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NAL  ++  IV+++ GTTRD +      +G    I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D++L++
Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +  ++  + ++ AD+I+ +
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFM 89


>gi|329770520|ref|ZP_08261898.1| GTP-binding protein Era [Gemella sanguinis M325]
 gi|328836269|gb|EGF85938.1| GTP-binding protein Era [Gemella sanguinis M325]
          Length = 302

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 93/197 (47%), Gaps = 24/197 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKIS 272
           E I+ G+ + I+G  NAGKS+L N + K+ +AI++D P TTR+++  +  D +  +V I 
Sbjct: 4   EQIKTGF-VTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRNIINGVYTDSDSQIVFI- 61

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP--- 317
           DT GI +    +    +K     ++ ++++ L+              IN  KE+  P   
Sbjct: 62  DTPGIHKPKHKLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFL 121

Query: 318 --KNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371
               ID I      ++ + Y E YD +    IS+     ++ L++  K  L   FK  P 
Sbjct: 122 LINKIDLITPEKLLEIITFYNELYDFVEIVPISALKSINVDNLLSTTKKYLQPSFKMYPD 181

Query: 372 SIPSHKRHLYHLSQTVR 388
            + +     + +S+ +R
Sbjct: 182 DVITDSPEYFVISEFIR 198


>gi|227364908|ref|ZP_03848953.1| GTP-binding protein EngA [Lactobacillus reuteri MM2-3]
 gi|325682467|ref|ZP_08161984.1| ribosome-associated GTPase EngA [Lactobacillus reuteri MM4-1A]
 gi|227070055|gb|EEI08433.1| GTP-binding protein EngA [Lactobacillus reuteri MM2-3]
 gi|324978306|gb|EGC15256.1| ribosome-associated GTPase EngA [Lactobacillus reuteri MM4-1A]
          Length = 440

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 21/156 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 9   VAVVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKHFSMIDTGGIEISD 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK----- 328
             +  +  ++  + ++ AD+I+ + ++ +           I +  N   +    K     
Sbjct: 69  QPLLTQIRQQAEIAIDEADVIIFVADVENGVTDADEQVARILYRSNKPVVLAVNKVDNPE 128

Query: 329 --SDLYSTYT----EEYDHLISSFTGEGLEELINKI 358
             SD+Y  Y+    E Y   +SS  G G+ +L++ +
Sbjct: 129 RRSDIYDYYSLGLGEPY--AVSSVHGIGMGDLLDAV 162



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 4/85 (4%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDI 283
           +G  N GKSSL NA+  ++  IV+++ GTTRD +    +  +G    + DTAGIR+   I
Sbjct: 183 IGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINTQFETADGQKFTMVDTAGIRKKGKI 242

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E+  + R+   ++++D++L++
Sbjct: 243 YENTERYSLMRSMRAIDDSDVVLVV 267


>gi|94265607|ref|ZP_01289351.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [delta proteobacterium MLMS-1]
 gi|93453886|gb|EAT04244.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [delta proteobacterium MLMS-1]
          Length = 299

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 23/196 (11%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +I  G+ + ++G  NAGKS+L N L  + +AIVT  P TTR+ +   ++   Y + + DT
Sbjct: 8   VISCGF-VALIGAPNAGKSTLLNRLLGQKIAIVTPKPQTTRNRILGVVNHRDYQMVLLDT 66

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID---------FIFI 325
            G+    + +  E ++         D++  L +++S+ E    ++            + +
Sbjct: 67  PGLHRAKNRLNSEMVRLARNAAGEVDVVAYLVDVSSETEAEQRRHAQKLLREAGKPALLL 126

Query: 326 GTKSD---------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           G K D         L + + E Y       +S+ TGEG +  + +   +L    +  P  
Sbjct: 127 GNKIDRIGKEKLLPLIAAWQEVYPFQAIIPLSALTGEGCQLFLTEASRLLPTGPRLFPED 186

Query: 373 IPSHKRHLYHLSQTVR 388
           IP+     +   + +R
Sbjct: 187 IPTDASERFICGEIIR 202


>gi|322375706|ref|ZP_08050218.1| ribosome-associated GTPase EngA [Streptococcus sp. C300]
 gi|321279414|gb|EFX56455.1| ribosome-associated GTPase EngA [Streptococcus sp. C300]
          Length = 436

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372
            EYD  I+ F    G+G+  ++NK  ++             +  +F+ LP++
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLDKDNHTMKNWEEDIREQFQYLPYA 323



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFV 89


>gi|116073379|ref|ZP_01470641.1| GTP-binding protein Era [Synechococcus sp. RS9916]
 gi|116068684|gb|EAU74436.1| GTP-binding protein Era [Synechococcus sp. RS9916]
          Length = 320

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 24/199 (12%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G   R+G+ + ++G  N GKS+L N L    VAI + +  TTR+ L   L  E   + + 
Sbjct: 15  GSTFRSGF-VALIGRPNVGKSTLVNQLVGDKVAITSPVAQTTRNRLRAILTTETAQLILV 73

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNI 320
           DT GI +   ++ +  ++     +   D +LLL E            +N  ++   P  +
Sbjct: 74  DTPGIHKPHHLLGERLVQSARAAIGEVDQVLLLLEGCEQPGKGDAFIVNLLQQQRLPVQV 133

Query: 321 -----DFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKKL 369
                D + + T+ +  + Y E         H  S+ +GEG  +L+  I + +    +  
Sbjct: 134 VLNKWDRVPVETRPEADAAYRELLSTTNWPLHHCSALSGEGCPDLVEAISAQMPEGPQLY 193

Query: 370 PFSIPSHKRHLYHLSQTVR 388
           P  + S +     +++ +R
Sbjct: 194 PPDMVSDQPERLLMAELIR 212


>gi|307244110|ref|ZP_07526228.1| ribosome-associated GTPase EngA [Peptostreptococcus stomatis DSM
           17678]
 gi|306492481|gb|EFM64516.1| ribosome-associated GTPase EngA [Peptostreptococcus stomatis DSM
           17678]
          Length = 442

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS++FN L    ++IV D PG TRD +  +++       I DT GI  E+
Sbjct: 9   VAVVGRPNVGKSTIFNKLTGTKISIVEDTPGVTRDRIFGEVEWLNKYFTIIDTGGIEPES 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DDI+  +   +  L V+ A +IL +
Sbjct: 69  DDIILSQMRNQAMLAVDMAHVILFV 93



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L +++  +  +G   E   +  ++ I G  NAGKSS+ N +  ++  IV+ I GTTRD +
Sbjct: 159 LLDEVVENFPEGMNTEYDEDVIRVAITGKPNAGKSSILNNILGEERVIVSPIAGTTRDAI 218

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
               + +     + DTAGIR    +   VE+  + R+   V+ AD++L++
Sbjct: 219 DTYFEKDDNKFLLIDTAGIRRRSKVYENVERFSVIRSMSAVDRADVVLIV 268


>gi|218781934|ref|YP_002433252.1| GTP-binding protein EngA [Desulfatibacillum alkenivorans AK-01]
 gi|226741134|sp|B8FM51|DER_DESAA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|218763318|gb|ACL05784.1| small GTP-binding protein [Desulfatibacillum alkenivorans AK-01]
          Length = 445

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  NAGKSSL N +  ++  +V+D PGTTRD +     + G    + DTAGIR   
Sbjct: 176 IGVVGRPNAGKSSLINKILGQERLLVSDTPGTTRDAVDTVCQVNGKPYLLLDTAGIRRKG 235

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   +EK  I R    +E  D+ L++
Sbjct: 236 KVKHKLEKFSIVRALKGLERCDVALVM 262



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 33/60 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN + K   A+V D PG TRD    D + +G    + DT G  + D
Sbjct: 4   LAIMGRPNVGKSTLFNRITKSRKAMVDDSPGVTRDRNYADAEHDGVKFSVVDTGGFSKND 63


>gi|158320432|ref|YP_001512939.1| small GTP-binding protein [Alkaliphilus oremlandii OhILAs]
 gi|166920096|sp|A8MH56|DER_ALKOO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|158140631|gb|ABW18943.1| small GTP-binding protein [Alkaliphilus oremlandii OhILAs]
          Length = 440

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN +A + ++IV + PG TRD +  + +   Y   + DT GI  E+
Sbjct: 6   VAVVGRPNVGKSTLFNKIAGERISIVENKPGVTRDRIYAEAEWLNYQFTLIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           ++I+  +  ++  L +E A++I+ +
Sbjct: 66  EEIIPAQMRRQAELAMETANVIIFV 90



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 5/89 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K+ ++G  N GKSSL N +  ++  IV+DI GTTRD + T   D +   V I DTAGIR 
Sbjct: 178 KVAMIGKPNVGKSSLINRILGEERVIVSDIAGTTRDAIDTPFTDGDDRYVLI-DTAGIRR 236

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              I   +EK  I R    VE +D+ LL+
Sbjct: 237 KSRITESIEKYSIVRAIAAVEKSDVCLLV 265


>gi|325294346|ref|YP_004280860.1| small GTP-binding protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325064794|gb|ADY72801.1| small GTP-binding protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 430

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I + G +N GKSS  N +  ++V+IV+DIPGTT DV+   ++ L    V   DTAGI + 
Sbjct: 12  IGVFGRTNVGKSSFINLVTGQEVSIVSDIPGTTTDVVEKAMEILPIGPVLFLDTAGI-DD 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
           + ++ KE +++ F  +   D+ LL+ E N
Sbjct: 71  ETLLGKERVRKAFEVLRRCDVALLMLEPN 99


>gi|212705028|ref|ZP_03313156.1| hypothetical protein DESPIG_03096 [Desulfovibrio piger ATCC 29098]
 gi|212671580|gb|EEB32063.1| hypothetical protein DESPIG_03096 [Desulfovibrio piger ATCC 29098]
          Length = 419

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           I + G  NAGKSSL NAL  +DVAIV+  PG+T D +  T+++   G +V + DTAG+ +
Sbjct: 17  IGLFGRRNAGKSSLLNALVGQDVAIVSPTPGSTTDPVEKTLEMAPLGPVVFL-DTAGLDD 75

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            +  +  + ++R+   +   D+ LL+
Sbjct: 76  REASLGAQRVERSLRAMRRVDVALLV 101


>gi|166030494|ref|ZP_02233323.1| hypothetical protein DORFOR_00155 [Dorea formicigenerans ATCC
           27755]
 gi|166029746|gb|EDR48503.1| hypothetical protein DORFOR_00155 [Dorea formicigenerans ATCC
           27755]
          Length = 428

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 15/122 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  NAGKSS+ NAL  +++AIV+DI GTT D +   ++L     V I DT G+ + 
Sbjct: 14  IGIFGKRNAGKSSVINALTGQNLAIVSDIKGTTTDPVLKSMELLPLGPVVIIDTPGLDDD 73

Query: 281 DDIVEKEGIKRTFLEVENADLILLL-----------KEINSKKEISFPKNIDFIFIGTKS 329
            DI+ K  I++ +  +   D+ +L+           K+I ++ +    KNI +I +  K+
Sbjct: 74  ADILGKLRIQKAYQMLNKTDIAILVIDGTVGMTEEDKKILTRIQ---DKNIPYIVVLNKA 130

Query: 330 DL 331
           DL
Sbjct: 131 DL 132


>gi|326773386|ref|ZP_08232669.1| ribosome-associated GTPase EngA [Actinomyces viscosus C505]
 gi|326636616|gb|EGE37519.1| ribosome-associated GTPase EngA [Actinomyces viscosus C505]
          Length = 719

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 4/90 (4%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S EVL+ ++ +  ++S+  +    G++    ++I ++G  N GKSSL N++A ++  +V 
Sbjct: 431 SGEVLDAVMEVLPEVSAVATAAPEGDL----HRIALVGRPNVGKSSLLNSIAGQERVVVN 486

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           +  GTTRD +   ++L+G      DTAGIR
Sbjct: 487 ETAGTTRDPVDEIIELDGRQWVFVDTAGIR 516



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 3/127 (2%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKL--GEIIRNGYKIV-ILGHSNAGKSSLFNA 238
           ED++  + +  L D    + D++   + G L  G+ +  G  ++ ++G  N GKS+L N 
Sbjct: 242 EDLRAQAMRAGLADYELDEEDLALLEADGGLPTGDSVEPGLPVLAVVGRPNVGKSTLVNR 301

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           +  +  A+V D PG TRD ++   +  G    I DT G       ++     +  + VE 
Sbjct: 302 VLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVDVAGLDAAVATQAEVAVEM 361

Query: 299 ADLILLL 305
           AD +LL+
Sbjct: 362 ADAVLLV 368


>gi|309798864|ref|ZP_07693125.1| GTP-binding protein EngA [Streptococcus infantis SK1302]
 gi|308117513|gb|EFO54928.1| GTP-binding protein EngA [Streptococcus infantis SK1302]
          Length = 436

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  +    EK  + R    ++ +D++L++  +N+++ I                      
Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372
            EYD  I+ F    G+G+  ++NK  ++             +  +F+ LP++
Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 323



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFV 89


>gi|301307317|ref|ZP_07213328.1| hypothetical protein HMPREF9347_05886 [Escherichia coli MS 124-1]
 gi|300837492|gb|EFK65252.1| hypothetical protein HMPREF9347_05886 [Escherichia coli MS 124-1]
          Length = 205

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|260072547|gb|ACX30447.1| Era/TrmE family GTP-binding protein [uncultured SUP05 cluster
           bacterium]
 gi|269468505|gb|EEZ80163.1| GTPase [uncultured SUP05 cluster bacterium]
          Length = 469

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 38/68 (55%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + +LG  N GKS+L N +  ++  +  D+PGTTRD + I  + EG    + DTAGIR
Sbjct: 178 GIAVAVLGRPNVGKSTLINRILGEERVLAIDMPGTTRDSIYIPFEREGQKYTLIDTAGIR 237

Query: 279 ETDDIVEK 286
                 EK
Sbjct: 238 RKRSTHEK 245



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 7/89 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV----LTIDLDLEGYLVKISDTAGI 277
           I ++G  N GKS+LFN L+    A+V+D  G TRD     + +D D + + V I DT G+
Sbjct: 6   ISLVGRPNVGKSTLFNRLSNSRQALVSDFEGLTRDRQYAEILLDDDSQTF-VTIIDTGGL 64

Query: 278 RETDDIVEKEGIKRTFLE-VENADLILLL 305
              D+IV+  GI+   L  +E +D+I  +
Sbjct: 65  TGDDNIVD-SGIQGQVLNALEESDVIYFI 92


>gi|259419101|ref|ZP_05743018.1| ribosome-associated GTPase EngA [Silicibacter sp. TrichCH4B]
 gi|259345323|gb|EEW57177.1| ribosome-associated GTPase EngA [Silicibacter sp. TrichCH4B]
          Length = 492

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 19/168 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + D+AG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDSAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ +E    + T   VE AD+ L + +  +          EI   K+   I    KS+
Sbjct: 63  ATDNSLEGRMRRLTERAVEMADVCLFIIDARAGVTPTDEMFAEILRKKSAHVILAANKSE 122

Query: 331 LYST---YTEEYDH------LISSFTGEGLEELINKIKSILSNKFKKL 369
             +      E Y         +S   GEGL +L +++  + S KF+KL
Sbjct: 123 GSAADAGVIEAYGLGLGEPIRMSGEHGEGLNDLYSELLPV-SEKFEKL 169



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 40/66 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D  G  ++I DTAG+R+ 
Sbjct: 208 QVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLKIDWSGTPMRIFDTAGMRKK 267

Query: 281 DDIVEK 286
             + EK
Sbjct: 268 AKVQEK 273


>gi|227529194|ref|ZP_03959243.1| GTP-binding protein EngA [Lactobacillus vaginalis ATCC 49540]
 gi|227350919|gb|EEJ41210.1| GTP-binding protein EngA [Lactobacillus vaginalis ATCC 49540]
          Length = 437

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 52/89 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKNFNLIDTGGIEISD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
             +  +  ++  + ++ AD+I+L+ +I +
Sbjct: 66  QPLLTQIRQQAEVAIDEADVIVLVVDIQN 94



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  ++  IV+++ GTTRD +       +G    + DTAGIR+   
Sbjct: 179 LIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINTRFTAKDGREFTMIDTAGIRKKGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLL 305
           I    E+  + R+   ++++D++L++
Sbjct: 239 IYENTERYSLMRSMRAIDDSDVVLVV 264


>gi|94989793|ref|YP_597893.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS10270]
 gi|94993678|ref|YP_601776.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS10750]
 gi|166225863|sp|Q1JIH4|DER_STRPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225864|sp|Q1J8C9|DER_STRPF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|94543301|gb|ABF33349.1| GTP-binding protein [Streptococcus pyogenes MGAS10270]
 gi|94547186|gb|ABF37232.1| GTP-binding protein [Streptococcus pyogenes MGAS10750]
          Length = 436

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           I    EK  + R    ++ +D++L++  IN+++ I                       EY
Sbjct: 239 IYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  ++
Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTL 299



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAQIAMEEADVIVFV 89


>gi|261749359|ref|YP_003257044.1| GTP-binding protein EngA [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497451|gb|ACX83901.1| GTP-binding protein EngA [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 439

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKS+L N+  +K+  IVT++ GTTRD L +     GY   + DT G+R+   I
Sbjct: 182 VIGRPNVGKSTLINSFLEKNHHIVTNVSGTTRDSLDVFCKKLGYKCILVDTPGVRKKSKI 241

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
              +E     RT   +E+ D+  L+
Sbjct: 242 SESLEFYSTMRTVKSIESTDICFLM 266



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 20/162 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y + I+G  N GKS+LFN L  +  AIV    G TRD +  + +  G    + DT G   
Sbjct: 3   YIVSIVGRPNVGKSTLFNRLVGRRKAIVHVRSGVTRDRIYGESEWNGVHFSLVDTGGYNP 62

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS-----FPKNIDFI----- 323
              ++++ E IK+  + ++ AD+IL L +I     ++  EIS     + K I  +     
Sbjct: 63  IHKNLLDAEIIKQILIAIKEADVILFLVDIKIGILDTDVEISQLLRKYKKYILLVVNKVD 122

Query: 324 ---FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
              ++   +D +     EY + IS+  G G  EL++++  I 
Sbjct: 123 NGKYMYHNTDFFCLGFREY-YYISAINGSGTGELLDRLIEIF 163


>gi|91069954|gb|ABE10882.1| GTP-binding protein [uncultured Prochlorococcus marinus clone
           ASNC2259]
          Length = 457

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL N++  +  AIV+DI GTT D +   +       KI DTAGIR   ++
Sbjct: 181 IIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNHWKIIDTAGIRRKKNV 240

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E  GI R F  ++ +D+ +L+
Sbjct: 241 KYGAEFFGINRAFKSIDRSDVCVLV 265



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   +I DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN 309
           D      I+ + FL +E + L LL+ + N
Sbjct: 66  DSEFLPEIRTQVFLALEESSLALLVVDGN 94


>gi|315929184|gb|EFV08408.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 67

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD     + +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63

Query: 282 DI 283
           ++
Sbjct: 64  EL 65


>gi|182679273|ref|YP_001833419.1| GTP-binding protein EngA [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635156|gb|ACB95930.1| small GTP-binding protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 470

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           I I+G  N GKS+LFN L  K +A+V D PG TRD    D  L     KI DTAG+ E  
Sbjct: 4   IAIIGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDAKLGDLTFKIIDTAGLEEGH 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           ++ +      +T   +E AD I  L
Sbjct: 64  EETLSGRMRAQTEAAIEQADGIFFL 88



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I ++G  NAGKS+L N L  ++  +     G TRD + +DL+  G  +KI DTAG+R  
Sbjct: 197 RIAVVGRPNAGKSTLLNRLLGEERLLTGPEAGLTRDSIGLDLEWRGRKMKIFDTAGLRRR 256

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + +D +EK         V  A+++++L
Sbjct: 257 AKIEDKLEKLAAADALRAVRFAEVVVVL 284


>gi|126695749|ref|YP_001090635.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9301]
 gi|166225836|sp|A3PBA9|DER_PROM0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|126542792|gb|ABO17034.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str.
           MIT 9301]
          Length = 457

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL N++  +  AIV+DI GTT D +   +       KI DTAGIR   ++
Sbjct: 181 IIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNHWKIIDTAGIRRKKNV 240

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E  GI R F  ++ +D+ +L+
Sbjct: 241 KYGTEFFGINRAFKSIDRSDVCVLV 265



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   +I DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN 309
           D      I+ + FL +E A L LL+ + N
Sbjct: 66  DSEFLPEIRTQVFLALEEASLALLVVDGN 94


>gi|320101768|ref|YP_004177359.1| ribosome-associated GTPase EngA [Isosphaera pallida ATCC 43644]
 gi|319749050|gb|ADV60810.1| ribosome-associated GTPase EngA [Isosphaera pallida ATCC 43644]
          Length = 547

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS+  N LA+++  IV+++ GTTRD + +  +L+G      DTAG+R  
Sbjct: 217 KIAVVGRPNTGKSTFINTLAQEERMIVSEVAGTTRDSVDVHFELDGLPFTAIDTAGVRRK 276

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305
               D ++   + R    +  +D+ LL 
Sbjct: 277 AKLRDSLDYFSLHRAQRSIRRSDVTLLF 304



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 24/36 (66%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           K+ ++G  N GKSSLFN L  K VAIV   PG TRD
Sbjct: 5   KVAVVGRPNVGKSSLFNWLVGKRVAIVEPTPGVTRD 40


>gi|91069816|gb|ABE10748.1| GTP-binding protein [uncultured Prochlorococcus marinus clone
           ASNC1092]
          Length = 457

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL N++  +  AIV+DI GTT D +   +       KI DTAGIR   ++
Sbjct: 181 IIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNHWKIIDTAGIRRKKNV 240

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E  GI R F  ++ +D+ +L+
Sbjct: 241 KYGTEFFGINRAFKSIDRSDVCVLV 265



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   +I DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN 309
           D      I+ + FL +E A L LL+ + N
Sbjct: 66  DSEFLPQIRTQVFLALEEASLALLVVDGN 94


>gi|84684686|ref|ZP_01012586.1| GTP-binding protein EngA [Maritimibacter alkaliphilus HTCC2654]
 gi|84667021|gb|EAQ13491.1| GTP-binding protein EngA [Rhodobacterales bacterium HTCC2654]
          Length = 481

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V + PG TRD+   +  L      + DTAG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDNQPGVTRDLREGEARLGEMRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TDD +E    + T   VE AD  L L
Sbjct: 63  ATDDSLEGRMRRLTERAVEMADACLFL 89



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N L  ++  +     G TRD +++  D +G   +I DTAG+R+ 
Sbjct: 195 QVAVIGRPNAGKSTLINRLIGEERLLTGPEAGITRDSISLAFDWDGTPTRIFDTAGMRKK 254

Query: 281 DDIVEK 286
             + EK
Sbjct: 255 AKVQEK 260


>gi|291526958|emb|CBK92544.1| iron-only hydrogenase maturation protein HydF [Eubacterium rectale
           M104/1]
          Length = 438

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 7/105 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I I G +N+GKSSL NA+ K++V+IV D+ GTT D +   +++   G  V I DTA
Sbjct: 11  NRLHIGIYGKTNSGKSSLINAVTKQEVSIVADVAGTTTDPVYKSMEIHPLGPCV-IIDTA 69

Query: 276 GIRETDDIVEKEGIKRTFLEVENADL---ILLLKEINSKKEISFP 317
           G  +  ++ E+  +++T L  E  D+   +L + E+ + K+   P
Sbjct: 70  GFDDDSELGERR-VEKTHLAAEKTDIAVVVLDIAEVIAAKKAGVP 113


>gi|68171706|ref|ZP_00545063.1| Small GTP-binding protein domain:GTP-binding [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88657837|ref|YP_507319.1| GTP-binding protein EngA [Ehrlichia chaffeensis str. Arkansas]
 gi|67998875|gb|EAM85570.1| Small GTP-binding protein domain:GTP-binding [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88599294|gb|ABD44763.1| GTP-binding protein EngA [Ehrlichia chaffeensis str. Arkansas]
          Length = 442

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  NAGKS+  N L  ++  IV+  PGTTRD + ++    G    + DTAG+R+ 
Sbjct: 175 KLSIVGRPNAGKSTFINRLLAENRMIVSPEPGTTRDSIDVEYTYRGQKFTLIDTAGMRKK 234

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + +T   +  +D+++L+
Sbjct: 235 AKVTESIEVTSVHKTIESINRSDIVILM 262



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 36/60 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS++FN L  +  AIV++IP  TRD    D DL G   KI DT G+  T
Sbjct: 3   KIAIVGLPNVGKSTIFNRLTSQKSAIVSNIPNLTRDRREGDADLCGLKFKIVDTGGVDNT 62


>gi|224535653|ref|ZP_03676192.1| hypothetical protein BACCELL_00517 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522726|gb|EEF91831.1| hypothetical protein BACCELL_00517 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 407

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 19/166 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I + G  N+GKSSL NAL  +D  IV+  PGTT D +T  +++   G  + I DT 
Sbjct: 22  NRLHIALFGRRNSGKSSLVNALTGQDTVIVSPTPGTTTDPVTKAMEIHPLGPCLLI-DTP 80

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSD 330
           G  +  ++ E   ++RT   +   D+ LLL E    +E  +      + I  I +  K+D
Sbjct: 81  GFDDEGELGEMR-VERTLKIIGKTDIALLLCETGDAQEQEWLQRLKERGIPVILLLNKAD 139

Query: 331 LYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKF 366
                TE  +           ++S+  G G+E +   I   L   F
Sbjct: 140 ARPNTTELAEQIKASCGQPPIIVSAKDGTGIEAIHRAILEKLPADF 185


>gi|330686012|gb|EGG97635.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU121]
          Length = 436

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD +  +   +G    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSYDGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + +E AD+I+ +
Sbjct: 66  APFQTQIRAQAEIAIEEADVIVFM 89


>gi|239623754|ref|ZP_04666785.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521785|gb|EEQ61651.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 442

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 7/91 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIR 278
           + I+G  N GKS+LFN +A   ++IV D PG TRD +  D   LD+   L+   DT GI 
Sbjct: 6   VAIVGRPNVGKSTLFNVIAGDTISIVKDTPGVTRDRIYADCTWLDMNFTLI---DTGGIE 62

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI 308
            +T DI+  +  ++  + +  AD+I+ + ++
Sbjct: 63  PDTKDIILSQMREQAEIAISTADVIIFIVDV 93



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 3/102 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L +++  H    K+ E   +  +I ++G  N GKSS+ N L  ++  IV+DI GTTRD +
Sbjct: 157 LLDEVVKHFDGEKIEEEEDDRPRIAVVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAV 216

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVE 297
             ++   G      DTAG+R    I   +E+  I RT   VE
Sbjct: 217 DTEIVYNGTPYVFIDTAGLRRKSRIKEELERYSIIRTVTAVE 258


>gi|270156684|ref|ZP_06185341.1| putative GTP-binding protein EngA [Legionella longbeachae D-4968]
 gi|289164869|ref|YP_003455007.1| GTPase involved in ribosome synthesis and maintenance [Legionella
           longbeachae NSW150]
 gi|269988709|gb|EEZ94963.1| putative GTP-binding protein EngA [Legionella longbeachae D-4968]
 gi|288858042|emb|CBJ11902.1| GTPase involved in ribosome synthesis and maintenance [Legionella
           longbeachae NSW150]
          Length = 466

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI   G  N GKS+L N +  ++  +V D+PGTTRD + I    +     + DTAG+R  
Sbjct: 176 KIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSIAIPFARDNQQYVLIDTAGVRRK 235

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN 309
              D+ +EK  + +T   +E +++ L L + N
Sbjct: 236 SRIDEKIEKFSVIKTLKAIEESNVCLQLLDAN 267



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   A+V D PG TRD        +     + DT GI   D
Sbjct: 5   IALVGRPNVGKSTLFNKLTKTQDALVADYPGLTRDRQYGQAQHDDKHYIVVDTGGIGIDD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             V+    K++ + +  AD++L L
Sbjct: 65  IAVDSLMSKQSEIALHEADIVLFL 88


>gi|218692698|ref|YP_002400910.1| hypothetical protein ECED1_5176 [Escherichia coli ED1a]
 gi|218430262|emb|CAR11129.1| conserved hypothetical protein with GTPase domain [Escherichia coli
           ED1a]
          Length = 303

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++ R+   I I+G S AGKSSL NAL + ++  V+D+   TR+V 
Sbjct: 30  LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEITPVSDVHAGTREVQ 88

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   GY + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 89  RFRLSGHGYSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134


>gi|154248944|ref|YP_001409769.1| small GTP-binding protein [Fervidobacterium nodosum Rt17-B1]
 gi|154152880|gb|ABS60112.1| small GTP-binding protein [Fervidobacterium nodosum Rt17-B1]
          Length = 403

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 20/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I+G  N GKSS  NAL  ++++IV+D PGTT D +   ++L     V + DT G+ + 
Sbjct: 11  ISIVGRRNVGKSSFMNALTGQEISIVSDTPGTTTDPVHKAMELYPLGPVTLIDTPGLDDV 70

Query: 281 DDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISFPK-----NIDFIFIGTKSDLY-- 332
            ++ EK  +++       +D  IL++ +   + E+   K      I FI +  KSD+   
Sbjct: 71  GELGEKR-VEKAIKAFYKSDAGILVVDDFPHEYEMKIKKLFDELEIPFIVVVNKSDILGE 129

Query: 333 --STYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +   +EY+ +       +SS   +G EE+   + SI+ +  +++PF
Sbjct: 130 KANEIAKEYEKIFSVPVFVVSSLGRQGFEEIGKTLNSIIPSD-EEIPF 176


>gi|227543422|ref|ZP_03973471.1| GTP-binding protein EngA [Lactobacillus reuteri CF48-3A]
 gi|300910088|ref|ZP_07127548.1| ribosome-associated GTPase EngA [Lactobacillus reuteri SD2112]
 gi|227186601|gb|EEI66672.1| GTP-binding protein EngA [Lactobacillus reuteri CF48-3A]
 gi|300892736|gb|EFK86096.1| ribosome-associated GTPase EngA [Lactobacillus reuteri SD2112]
          Length = 440

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 21/156 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 9   VAVVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKHFSMIDTGGIEISD 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK----- 328
             +  +  ++  + ++ AD+I+ + ++ +           I +  N   +    K     
Sbjct: 69  QPLLTQIRQQAEVAIDEADVIIFVADVENGVTDADEQVARILYRSNKPVVLAVNKVDNPE 128

Query: 329 --SDLYSTYT----EEYDHLISSFTGEGLEELINKI 358
             SD+Y  Y+    E Y   +SS  G G+ +L++ +
Sbjct: 129 RRSDIYDYYSLGLGEPY--AVSSVHGIGMGDLLDAV 162



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 4/85 (4%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDI 283
           +G  N GKSSL NA+  ++  IV+++ GTTRD +    +  +G    + DTAGIR+   I
Sbjct: 183 IGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINTQFETADGQKFTMVDTAGIRKKGKI 242

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E+  + R+   ++++D++L++
Sbjct: 243 YENTERYSLMRSMRAIDDSDVVLVV 267


>gi|319408190|emb|CBI81843.1| GTP-binding protein [Bartonella schoenbuchensis R1]
          Length = 469

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 4/109 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I I+G  N GKS+LFN L  + +A+V + PG TRD    +  L+     + DTAG+ + +
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGQKLALVDNKPGVTRDRRVHEARLQDLRFNVIDTAGLEDAS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS 329
           D  +E     +T   ++ ADLIL +  +++K  ++ P +  F  +  KS
Sbjct: 65  DQTLEGRMFFQTKAAIKEADLILFV--LDAKSGVT-PSDCSFASLVRKS 110



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I G  N GKS+L N++  +D  +     G TRD +++D +  G   K+ DTAG+R  
Sbjct: 206 RIAIAGRPNTGKSTLINSMLGQDRLLTGPEAGITRDSISVDWEWRGRCFKLFDTAGLRRK 265

Query: 281 DDIVEK 286
             + EK
Sbjct: 266 LKVQEK 271


>gi|309389060|gb|ADO76940.1| ribosome-associated GTPase EngA [Halanaerobium praevalens DSM 2228]
          Length = 438

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL N L  K   IV+D+PGTTRD +   +  +       DTAG+R   
Sbjct: 180 IAVIGKPNVGKSSLVNHLIGKKRVIVSDMPGTTRDAVDTMIKWKDISFNFIDTAGLRRKS 239

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   VE     R    V+ AD +L++
Sbjct: 240 RVKEDVEYYSNLRALRSVDRADAVLMM 266



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L     AIV   P  TRD +  + +  G    + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGGRRAIVEGEPNVTRDRIYGETEWLGKKFNVIDTGGIVLHD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305
           +   K  IK +  + +E ADLIL +
Sbjct: 66  NDKIKNQIKYQAEIAMEEADLILFV 90


>gi|315652318|ref|ZP_07905310.1| GTP-binding protein [Eubacterium saburreum DSM 3986]
 gi|315485441|gb|EFU75831.1| GTP-binding protein [Eubacterium saburreum DSM 3986]
          Length = 408

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 10/118 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  N GKSSL NA+  +D+AIV+DI GTT D +   ++L  +  V I DT G+ + 
Sbjct: 25  IAIFGCCNVGKSSLINAITSQDIAIVSDISGTTTDPVKKSMELLPFGPVVIIDTPGLDDK 84

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNID-----FIFIGTKSD 330
             +     ++++   +  ADLIL + + +   S  EI F   I      ++ +G KSD
Sbjct: 85  STLGALR-VEKSLEYINQADLILFVVDASNETSPDEIEFLDKIKSNEKRYLVVGNKSD 141


>gi|238922661|ref|YP_002936174.1| GTP-binding protein EngA [Eubacterium rectale ATCC 33656]
 gi|238874333|gb|ACR74040.1| GTP-binding protein EngA [Eubacterium rectale ATCC 33656]
          Length = 454

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 7/105 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I I G +N+GKSSL NA+ K++V+IV D+ GTT D +   +++   G  V I DTA
Sbjct: 27  NRLHIGIYGKTNSGKSSLINAVTKQEVSIVADVAGTTTDPVYKPMEIHPLGPCV-IIDTA 85

Query: 276 GIRETDDIVEKEGIKRTFLEVENADL---ILLLKEINSKKEISFP 317
           G  +  ++ E+  +++T L  E  D+   +L + E+ + K+   P
Sbjct: 86  GFDDDSELGERR-VEKTHLAAEKTDIAVVVLDIAEVIAAKKAGVP 129


>gi|183601656|ref|ZP_02963026.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241190845|ref|YP_002968239.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196251|ref|YP_002969806.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183219262|gb|EDT89903.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249237|gb|ACS46177.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250805|gb|ACS47744.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289178585|gb|ADC85831.1| EngA [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793834|gb|ADG33369.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 710

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 19/177 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 276 IAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 335

Query: 282 DIVEKEGIKRTFLEVENAD------------------LILLLKEINSKKEISFPKNIDFI 323
           + ++     +  + VE AD                  ++ LL++      ++  K  D I
Sbjct: 336 EGIDSAIASQAQIAVELADSVIFVVDALTGLTQTDERIVKLLRQAGKPVTVAVNKIDDQI 395

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                ++ +     E  + IS+  G G+ +L+++  + + +  K   F  PSH R +
Sbjct: 396 SEYMAAEFWKLGLGE-PYPISAMHGRGVGDLLDEAVAQMKSAEKTSGFLTPSHLRRV 451



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N L+  + ++V ++ GTTRD +   + +D E YL    DTAGI+
Sbjct: 450 RVALVGRPNVGKSSLLNQLSHSERSVVNELAGTTRDPVDEIVTIDGEDYL--FIDTAGIK 507

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
                +   E     RT   +E ++L L+L
Sbjct: 508 RRQHKLSGAEYYSSLRTQAAIERSELALVL 537


>gi|149200553|ref|ZP_01877562.1| GTP-binding protein [Lentisphaera araneosa HTCC2155]
 gi|149136350|gb|EDM24794.1| GTP-binding protein [Lentisphaera araneosa HTCC2155]
          Length = 487

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 13/117 (11%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L+ DI S+       +      +I + G  N GKSS+ N L  +D  IV+DI GTTRD +
Sbjct: 167 LREDICSYFPPTDEEDEASPDLRITLAGRPNVGKSSIANRLLGEDRVIVSDIAGTTRDAV 226

Query: 259 TIDLDLE-------GYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLL 305
            I    +       G LV   DTAG+++    D++VEK  + RT   ++ + +IL +
Sbjct: 227 DIPFSFDDEGESRNGLLV---DTAGVKKAGKIDNLVEKFSMMRTEEAIKRSTVILFV 280



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 9/94 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN L +K +AIV +  G TRD +   +   GY  ++ DT G+    
Sbjct: 13  VTIVGRPNVGKSSLFNTLLRKRIAIVHEQCGVTRDRVAQPVSWNGYRYQLVDTGGLGVLS 72

Query: 282 DIVEK------EGIKRTF-LEVENADLILLLKEI 308
           D  EK      E I+    + VE++D++++L ++
Sbjct: 73  D--EKNVEFMDEKIRMQLKVAVESSDILIMLTDV 104


>gi|154253924|ref|YP_001414748.1| small GTP-binding protein [Parvibaculum lavamentivorans DS-1]
 gi|171769688|sp|A7HYV8|DER_PARL1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|154157874|gb|ABS65091.1| small GTP-binding protein [Parvibaculum lavamentivorans DS-1]
          Length = 473

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  N GKS+LFN L  K +A+V D PG TRD    +  L      I DTAG+ E
Sbjct: 3   FKVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRREGEARLGDLSFTIIDTAGLEE 62

Query: 280 ----TDDIVEKEGIKRTFLEVENADLILLL 305
               T +   + G +R    + +ADL LLL
Sbjct: 63  AATGTLEARMRIGTERA---IADADLCLLL 89



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKS+L N L  +D  +     G TRD + I+ +  G  VK+ DTAG+R  
Sbjct: 204 RVAIIGRPNVGKSTLVNQLLGEDRMLTGPEAGITRDSIGIEWEWRGRRVKLWDTAGMRRR 263

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  +  T   V  A+++++L
Sbjct: 264 ARVTEKLEKLSVADTLRAVRFAEVVVIL 291


>gi|300776276|ref|ZP_07086134.1| ribosome-associated GTPase EngA [Chryseobacterium gleum ATCC 35910]
 gi|300501786|gb|EFK32926.1| ribosome-associated GTPase EngA [Chryseobacterium gleum ATCC 35910]
          Length = 436

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I G  N GKS+L NAL   +  IVTDI GTTRD +    +  G+   + DTAG+R  
Sbjct: 177 KITIAGRPNVGKSTLTNALLDVERNIVTDIAGTTRDSIQTLYNKFGHEFVLVDTAGMRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +E   + R+   +E +D+++++
Sbjct: 237 SKVNEDLEFYSVMRSIRSIEYSDVVIIM 264



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L ++  AIV    G TRD      D  G    + DT G    T
Sbjct: 5   VAIVGRPNVGKSTLFNRLLERREAIVDSTAGVTRDRHYGKSDWNGVDFTVIDTGGYDVGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
           DDI E+E  K+  L V+ A  I+ +  +
Sbjct: 65  DDIFEEEIRKQVQLAVDEATSIIFMMNV 92


>gi|123967979|ref|YP_001008837.1| GTP-binding protein EngA [Prochlorococcus marinus str. AS9601]
 gi|166225839|sp|A2BPL9|DER_PROMS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123198089|gb|ABM69730.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str.
           AS9601]
          Length = 457

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL N++  +  AIV+DI GTT D +   +       KI DTAGIR   ++
Sbjct: 181 IIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNNWKIIDTAGIRRKKNV 240

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E  GI R F  ++ +D+ +L+
Sbjct: 241 KYGTEFFGINRAFKSIDRSDVCVLV 265



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   +I DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN 309
           +      I+ + FL +E A L LL+ + N
Sbjct: 66  ESEFLPEIRTQVFLALEEASLALLVVDGN 94


>gi|145219270|ref|YP_001129979.1| GTP-binding protein EngA [Prosthecochloris vibrioformis DSM 265]
 gi|189037154|sp|A4SDB8|DER_PROVI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145205434|gb|ABP36477.1| small GTP-binding protein [Chlorobium phaeovibrioides DSM 265]
          Length = 436

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 47/86 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + ++  AIV   PG TRD    +   +G   ++ DT G    D
Sbjct: 5   IALVGRPNVGKSTLFNRILRERAAIVDSTPGVTRDRHISEGFWQGRAFRLMDTGGYAPED 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
            ++    +++T   + +AD+++ + +
Sbjct: 65  GVISNAMLEQTMTAINDADIVVFVAD 90



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSS  NAL   +  IV+DIPGTTRD +            + DTAG+R+ 
Sbjct: 178 RLAVVGRPNVGKSSFVNALLGNNRQIVSDIPGTTRDAIDTRFTRNQQDFLLIDTAGLRKR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E     R+   +E  ++++++
Sbjct: 238 TKISAGIEYYSSLRSEKAIERCEVVMVM 265


>gi|323705546|ref|ZP_08117120.1| small GTP-binding protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535023|gb|EGB24800.1| small GTP-binding protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 411

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 33/172 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I G  NAGKSS+ NAL  +++AIV+D+ GTT D +   ++ L    V I DTAG+ +T
Sbjct: 12  ISIFGRRNAGKSSIINALTNQNIAIVSDVAGTTTDPVHKAMEILPIGPVVIIDTAGLDDT 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLL-----------KEINSKKEISFPKNIDFIFIGTKS 329
            ++ E   +K+T+  +   DL LL+           +EI  K      KNI  + +  K+
Sbjct: 72  GELGELR-VKKTYEVLNRTDLALLVIDGMVGPSKFEEEILDKIR---EKNIPVVGVLNKA 127

Query: 330 DLYS-TYTEEYD-------HLI--SSFTGEGLEELINKIKSILSNKFKKLPF 371
           DL    + ++ D        L+  S+ +G G+EEL  +I        KK P+
Sbjct: 128 DLAQFNFIQKADWEKRLKLELVETSANSGYGIEELKRQI-------IKKAPY 172


>gi|118602671|ref|YP_903886.1| small GTP-binding protein [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567610|gb|ABL02415.1| small GTP-binding protein [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 465

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + +LG  N GKS+L N +  ++  +V D PGTT D + I  + EG      DTAGIR
Sbjct: 178 GITVAVLGRPNVGKSTLINRILGQERVLVMDFPGTTHDSIYIPFEHEGQKYTFIDTAGIR 237

Query: 279 E---TDDIVEKEGIKRTFLEVENADLILLL 305
               T + VE   I +    +E A +++L+
Sbjct: 238 RKRSTHEKVEIFSIIKAIDALERAHVVILV 267



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV----LTIDLDLEGYLVKISDTAGI 277
           I ++G  N GKS+LFN L+    A+V+D  G TRD     + +D D + +   I DT G+
Sbjct: 6   ICLVGRPNVGKSTLFNRLSHSRQALVSDFEGLTRDRQYAEVLLDNDTQTF-ATIIDTGGL 64

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305
              +++V+     +    +E +D+I  +
Sbjct: 65  TNKNNLVDSSIQGQVLNALEESDIIYFI 92


>gi|319400824|gb|EFV89043.1| small GTP-binding domain protein [Staphylococcus epidermidis
           FRI909]
          Length = 436

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD +  +   +G    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSEVVLVV 264



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + +E AD+I+ +
Sbjct: 66  APFQTQIRAQAEIAIEEADVIIFM 89


>gi|153954948|ref|YP_001395713.1| HydF [Clostridium kluyveri DSM 555]
 gi|219855393|ref|YP_002472515.1| hypothetical protein CKR_2050 [Clostridium kluyveri NBRC 12016]
 gi|146347806|gb|EDK34342.1| HydF [Clostridium kluyveri DSM 555]
 gi|219569117|dbj|BAH07101.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 413

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 41/177 (23%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           I + G  NAGKSS+ NA+  +D+AIV+ + GTT D +  +I++   G  V I DTAG+ +
Sbjct: 14  ITLFGRRNAGKSSIINAITGQDIAIVSSVKGTTTDPVYKSIEILPIGPCV-IIDTAGLDD 72

Query: 280 TDDIVEKEGIKRTFLEVEN-ADLIL---------------LLKEINSKKEISFPKNIDFI 323
           +  + E    K+  LEV N  D+ L               ++ EI SKK       I F+
Sbjct: 73  SGQLGELR--KKKTLEVLNKTDISLVVIDSTVGITEYDRYIIDEIKSKK-------IPFM 123

Query: 324 FIGTKSDLYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILS---NKFK 367
            I  K D+ +   ++  ++          +S+ TG+G++EL N+I  IL    +KFK
Sbjct: 124 GILNKWDISNIDEKDIKNIKEELDIPLIAVSAVTGKGIKELKNQIAGILPKEEDKFK 180


>gi|94267274|ref|ZP_01290827.1| Small GTP-binding protein domain:GTP-binding [delta proteobacterium
           MLMS-1]
 gi|93452066|gb|EAT02754.1| Small GTP-binding protein domain:GTP-binding [delta proteobacterium
           MLMS-1]
          Length = 453

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++  +G  N GKSSL N L   +  +V+++PGTTRD +   L       ++ DTAGIR  
Sbjct: 190 RVAFIGRPNVGKSSLINRLLGSERMVVSEVPGTTRDSVDSLLIRGEKQYRLIDTAGIRRK 249

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VEK  + R    +E  DL LL+
Sbjct: 250 GKVRESVEKFSVMRALAALERCDLALLV 277



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 17/145 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSLFN +A    AIV   PG TRD     +        + DT GI E D
Sbjct: 10  VALVGRPNVGKSSLFNRIAGGRKAIVDPTPGVTRDRHYQQVSWNQRHFMLIDTGGI-EGD 68

Query: 282 DIVEKEGIKRTFLE-----VENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY- 335
              E   I R   E     V  AD+ILLL  +++++ ++ P +   + I  +S     Y 
Sbjct: 69  KSSEVP-INRLIGEQSRQAVAEADVILLL--LDARQGVT-PDDYQVVEILRRSGKPVHYL 124

Query: 336 ------TEEYDHLISSFTGEGLEEL 354
                  E+ D L+ +F   G+ +L
Sbjct: 125 VNKIDAPEQVDKLLPTFYELGVPQL 149


>gi|50954356|ref|YP_061644.1| GTP-binding protein EngA [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71648669|sp|Q6AGF6|DER_LEIXX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|50950838|gb|AAT88539.1| GTP-binding protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 481

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 34/208 (16%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           ++L+ IL    D+S+ +++ ++G       ++ ILG  N GKSSL N  A ++  +V ++
Sbjct: 197 DLLDKILKALPDVSA-VAKQEVG----GPRRVAILGRPNVGKSSLLNKAAGEERVVVNEL 251

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR---------------ETDDIVEKEGIKRTFLE 295
            GTTRD +   ++L G + +  DTAGIR                T   +EK  +    L+
Sbjct: 252 AGTTRDPVDEQVELGGRVWRFVDTAGIRRRVHLQQGADFYASLRTSTALEKAEVAVVVLD 311

Query: 296 V------ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------- 342
           V      ++  +I L+ E      ++F K  D +    +  L     ++  H+       
Sbjct: 312 VSQPISEQDVRIIDLVLESGRALVLAFNK-WDLLDDERRRYLEREIEQDLAHVSWAPRVN 370

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLP 370
           IS+ TG  LE+L+  ++  L +   ++P
Sbjct: 371 ISARTGRHLEKLVPALERALESWETRIP 398



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 49  LAIVGRPNVGKSALVNRILGRREAVVEDTPGVTRDRVSYRAEWNGRRFTVVDTGGWEPDA 108

Query: 282 DIVEKEGIKRTFLEVENADLIL------------------LLKEINSKKEISFPKNIDFI 323
             ++     +  + ++ AD ++                  LL++ +    ++  K  D  
Sbjct: 109 RGIDASVAAQAEVAIDLADAVMFVVDAMVGATSTDEHVVRLLRKSDKPVFLAANKVDDAR 168

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
              + ++L+S    E  H +S+  G G+ +L++KI   L +
Sbjct: 169 QEPSATELWSLGLGE-PHPVSALHGRGVADLLDKILKALPD 208


>gi|103487684|ref|YP_617245.1| GTP-binding protein EngA [Sphingopyxis alaskensis RB2256]
 gi|98977761|gb|ABF53912.1| Small GTP-binding protein domain [Sphingopyxis alaskensis RB2256]
          Length = 456

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 20/160 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G   +I DTAG  E  
Sbjct: 7   IAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRREGDGKLLGLEFRIVDTAGF-EDQ 65

Query: 282 DIVEKEGIKRTFLE--VENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD- 330
           D     G  R   E  V  AD  L L +  +      +EI+     ++   I    K++ 
Sbjct: 66  DAATLPGRMRAQTEKAVREADAALFLIDARAGVTPLDEEIARWLRSEDTPVILCANKAEG 125

Query: 331 ------LYSTYTEEYDHL--ISSFTGEGLEELINKIKSIL 362
                 L   Y+  ++ +  +S+  GEGL +L + ++ I+
Sbjct: 126 KQGEAGLMEAYSLGFETVFALSAEHGEGLVDLFDALRPIV 165



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 7/92 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL----DLEGYLVKISDTAG 276
           K+ I+G  NAGKS+L N +  +D  I     G TRD + +D     D E + +++ DTAG
Sbjct: 188 KLAIVGRPNAGKSTLINRMIGEDRLITGPEAGITRDSIRVDWRWEKDGEVHEIQLFDTAG 247

Query: 277 IR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           +R   +  D +EK  +      V+ A++++LL
Sbjct: 248 MRKRAKVQDKLEKLSVADALHAVDFAEVVVLL 279


>gi|291526461|emb|CBK92048.1| iron-only hydrogenase maturation protein HydF [Eubacterium rectale
           DSM 17629]
          Length = 458

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 7/105 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I I G +N+GKSSL NA+ K++V+IV D+ GTT D +   +++   G  V I DTA
Sbjct: 31  NRLHIGIYGKTNSGKSSLINAVTKQEVSIVADVAGTTTDPVYKPMEIHPLGPCV-IIDTA 89

Query: 276 GIRETDDIVEKEGIKRTFLEVENADL---ILLLKEINSKKEISFP 317
           G  +  ++ E+  +++T L  E  D+   +L + E+ + K+   P
Sbjct: 90  GFDDDSELGERR-VEKTHLAAEKTDIAVVVLDIAEVIAAKKAGVP 133


>gi|260655278|ref|ZP_05860766.1| ribosome-associated GTPase EngA [Jonquetella anthropi E3_33 E1]
 gi|260629726|gb|EEX47920.1| ribosome-associated GTPase EngA [Jonquetella anthropi E3_33 E1]
          Length = 440

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           KI ++G  N GKSS+ N LA +D ++V+D+ GTTRD +  +        +I DTAG+R 
Sbjct: 176 KIALVGRPNCGKSSILNRLAGEDRSLVSDVAGTTRDAIDWETAQNSRTFRIVDTAGLRR 234



 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 32/61 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN L     AIV D PG TRD L   ++       + DT G+   D
Sbjct: 4   VSIVGRPNVGKSSLFNRLVGSRRAIVDDQPGVTRDRLFGRVEWGDRSFYLVDTGGLLLRD 63

Query: 282 D 282
           D
Sbjct: 64  D 64


>gi|254431747|ref|ZP_05045450.1| GTP-binding protein EngA [Cyanobium sp. PCC 7001]
 gi|197626200|gb|EDY38759.1| GTP-binding protein EngA [Cyanobium sp. PCC 7001]
          Length = 441

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  ++ AIV+ I GTTRD +   ++ EG   K+ DTAGIR  
Sbjct: 165 QLAIIGRPNVGKSSLLNAVCGENRAIVSPIRGTTRDTIDTTIEREGKTWKLLDTAGIRRR 224

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  +E +D+ +L+
Sbjct: 225 RSVNYGPEFFGINRSFKAIERSDVCVLV 252


>gi|242242754|ref|ZP_04797199.1| GTP-binding protein EngA [Staphylococcus epidermidis W23144]
 gi|242233890|gb|EES36202.1| GTP-binding protein EngA [Staphylococcus epidermidis W23144]
          Length = 436

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD +  +   +G    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSEVVLVV 264



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + +E AD+I+ +
Sbjct: 66  APFQTQIRAQAEIAIEEADVIIFM 89


>gi|27468081|ref|NP_764718.1| GTP-binding protein EngA [Staphylococcus epidermidis ATCC 12228]
 gi|57867002|ref|YP_188620.1| GTP-binding protein EngA [Staphylococcus epidermidis RP62A]
 gi|251810897|ref|ZP_04825370.1| GTP-binding protein EngA [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876093|ref|ZP_06284960.1| ribosome-associated GTPase EngA [Staphylococcus epidermidis SK135]
 gi|293366558|ref|ZP_06613235.1| ribosome-associated GTPase EngA [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|37999682|sp|Q8CP62|DER_STAES RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|71151866|sp|Q5HP70|DER_STAEQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|27315626|gb|AAO04760.1|AE016747_257 GTP binding protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637660|gb|AAW54448.1| GTP-binding protein, Era/TrmE family [Staphylococcus epidermidis
           RP62A]
 gi|251805577|gb|EES58234.1| GTP-binding protein EngA [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295118|gb|EFA87645.1| ribosome-associated GTPase EngA [Staphylococcus epidermidis SK135]
 gi|291319327|gb|EFE59696.1| ribosome-associated GTPase EngA [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329735360|gb|EGG71652.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU045]
 gi|329737420|gb|EGG73674.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU028]
          Length = 436

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD +  +   +G    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSEVVLVV 264



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERISIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + +E AD+I+ +
Sbjct: 66  APFQTQIRAQAEIAIEEADVIIFM 89


>gi|329725422|gb|EGG61905.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU144]
          Length = 436

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD +  +   +G    + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSEVVLVV 264



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + +E AD+I+ +
Sbjct: 66  APFQTQIRAQAEIAIEEADVIIFM 89


>gi|262091771|gb|ACY25359.1| GTP-binding protein Era [uncultured actinobacterium]
          Length = 653

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++GY K+ ++G  N GKSSLFNA+A + ++IV D  GTTRD +   L   G   +  DTA
Sbjct: 389 QDGYRKVALIGRPNVGKSSLFNAIAGESLSIVDDAAGTTRDPVDSLLSFGGSTWRFIDTA 448

Query: 276 GIRE 279
           G+++
Sbjct: 449 GLKK 452



 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 31/165 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+L N    +  AIV D PG TRD +  + +  G    I DT G     
Sbjct: 223 VAILGRPNVGKSTLINRFLGRREAIVEDTPGVTRDRVQYECEWGGRRFIIMDTGGWEAKP 282

Query: 282 DIVEKEGIKRTFLEVENADLI---------------LLLKEINSKKEISFPKNIDFIFIG 326
           D +  +    + L ++ AD++               +L++ +   K+ +       I IG
Sbjct: 283 DGISVQVSAGSELAMQEADVLAFVVDAQVGALDEDDILVQHLRKAKKPT-------ILIG 335

Query: 327 TKSDLYSTYTEEY---------DHLISSFTGEGLEELINKIKSIL 362
            K D      E +            +S+  G G  +L++ I ++L
Sbjct: 336 NKVDGEREEAEAHGLWSLGLGEPRFVSALHGRGSGDLLDHIVAVL 380


>gi|239978699|ref|ZP_04701223.1| GTP-binding protein EngA [Streptomyces albus J1074]
 gi|291450591|ref|ZP_06589981.1| GTP-binding protein engA [Streptomyces albus J1074]
 gi|291353540|gb|EFE80442.1| GTP-binding protein engA [Streptomyces albus J1074]
          Length = 487

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +I ++G  N GKSSL N +A++D  +V ++ GTTRD +   ++L G   K  DTAGIR+
Sbjct: 226 RIALIGRPNVGKSSLLNKVAREDRVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRK 284



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G
Sbjct: 51  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKLVDTGG 105


>gi|304391252|ref|ZP_07373196.1| ribosome-associated GTPase EngA [Ahrensia sp. R2A130]
 gi|303296608|gb|EFL90964.1| ribosome-associated GTPase EngA [Ahrensia sp. R2A130]
          Length = 478

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  NAGKS+L N +  +D  +     G TRD +++D + +G  +K+ DTAG+R  
Sbjct: 207 KICIVGRPNAGKSTLINRMLGEDRLLTGPEAGITRDSISVDWEWQGRSIKLFDTAGMRRK 266

Query: 281 DDIVEK 286
             + EK
Sbjct: 267 ARVQEK 272



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + + G  N GKS+LFN L  K +A+V D PG TRD  + +  +     ++ DTAG+ E
Sbjct: 3   FTVAVAGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRRSGNARIGDIKFEVIDTAGLEE 62

Query: 280 TD 281
            D
Sbjct: 63  AD 64


>gi|221194359|ref|ZP_03567416.1| ribosome-associated GTPase EngA [Atopobium rimae ATCC 49626]
 gi|221185263|gb|EEE17653.1| ribosome-associated GTPase EngA [Atopobium rimae ATCC 49626]
          Length = 440

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N LA K  +IV+++ GTTRD +   +  +   + + DTAG+R+ 
Sbjct: 180 RLAIIGRPNVGKSSLANRLAGKKRSIVSNVAGTTRDAIDTMIMWKDQPICLVDTAGMRQK 239

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   VE   + R    ++ AD+ LL+
Sbjct: 240 SKVHEDVEYYSLLRGLRAMDRADVCLLV 267



 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + ++G  N GKS+L N LA++  AIV +  G TRD    D D  G    + DT GI   +
Sbjct: 6   VAVVGRPNVGKSTLVNRLAQRREAIVHESRGVTRDRSYHDADWNGREFCLIDTGGIESVK 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           + D       ++  L  E AD+I+ +
Sbjct: 66  SKDQFAPHIREQALLACEEADVIVFV 91


>gi|167749645|ref|ZP_02421772.1| hypothetical protein EUBSIR_00603 [Eubacterium siraeum DSM 15702]
 gi|167657398|gb|EDS01528.1| hypothetical protein EUBSIR_00603 [Eubacterium siraeum DSM 15702]
          Length = 400

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 16/161 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  NAGKSSL NA+  +++A+V+D  GTT D ++  ++L     V I+DT G+ + 
Sbjct: 14  IGIFGRRNAGKSSLINAITGQELAVVSDTAGTTTDPVSKAMELLPLGPVMITDTPGLDDE 73

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSD 330
            D+     +++++  +   D+ LL+  ++S K IS            +NI +I +  K  
Sbjct: 74  GDLGSLR-VRKSYQVLFKTDIALLV--VDSTKGISDFDSAILERLKKQNIPYIIVMNKCG 130

Query: 331 LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKL 369
           L  T   + D  I   +  G  + EL   I S L  K +K+
Sbjct: 131 LLDTVPPKTDGTIYTDALNGTNIYELKELIGSRLDVKDEKM 171


>gi|172034988|ref|YP_001801489.1| hypothetical protein cce_0071 [Cyanothece sp. ATCC 51142]
 gi|171696442|gb|ACB49423.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 537

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 29/227 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDT 274
           R  +K+VI G  +AGK+SL NAL  + +  V    GTT+   T  L L+G    + I+DT
Sbjct: 129 RGEFKVVIFGTGSAGKTSLVNALLGEIIGQVQATMGTTKIGETYALKLKGLSREILITDT 188

Query: 275 AGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL-- 331
            GI E   +  E+E + R       ADL+L + + + ++    P  I  + IG +S L  
Sbjct: 189 PGILEAGIEGTEREKLARQL--ATEADLLLFVVDNDLRQSEYKPLQI-LVDIGKRSLLVF 245

Query: 332 --YSTYTEEYDHLISSFTGEGLEELINKIKSILSNK----FKKLPFSIPSHKRHLYHLSQ 385
                YTEE +  I       L++L  ++KS +  +        P + PS        S 
Sbjct: 246 NKVDLYTEEEETQI-------LQQLRERVKSFIPEQDVISVAANPQTFPSQTGQTIQPSP 298

Query: 386 TVRYL--EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
            +  L   +A++   + G D+IA+N+ L S  LG+     +  QL+D
Sbjct: 299 DILPLIKRLATILRAE-GEDLIADNILLQSQRLGE-----EARQLID 339


>gi|319784770|ref|YP_004144246.1| ribosome-associated GTPase EngA [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170658|gb|ADV14196.1| ribosome-associated GTPase EngA [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 477

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  NAGKS+L NAL  ++  +     G TRD +++D D  G  +K+ DTAG+R  
Sbjct: 207 RIAVVGRPNAGKSTLINALIGEERLLTGPEAGITRDSISVDWDWHGRRLKLFDTAGMRRK 266

Query: 281 DDIVEK 286
             I EK
Sbjct: 267 ARIHEK 272



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  N GKS+LFN L  + +A+V D PG TRD       L      + DTAG  +
Sbjct: 3   FKVAIIGRPNVGKSTLFNRLVGRKLALVDDTPGVTRDRRVHAAKLYDLHFDVIDTAGFED 62

Query: 280 TDDIVEKEGIK-RTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS 329
                    ++ +T + +  ADLI     I++K  +  P +  F  I  KS
Sbjct: 63  AGASTLPGRMRAQTEIAIREADLIFF--TIDAKSGL-LPDDRTFAEIVRKS 110


>gi|165932728|ref|YP_001649517.1| GTPase Era [Rickettsia rickettsii str. Iowa]
 gi|165907815|gb|ABY72111.1| GTP-binding protein [Rickettsia rickettsii str. Iowa]
          Length = 339

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 20/159 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E  
Sbjct: 55  VCIIGQPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114

Query: 282 DIVEKEGIKRTFLEVENADLILL-LKEINSKKEISF-------PKNIDFIFIGTKSDLYS 333
             +EK  ++  +  + +ADL+LL +  + S  +I+          NI  IF+  K D+ S
Sbjct: 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIIPIFLLNKIDIES 174

Query: 334 TY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360
            Y        TE Y D L   IS+ +G+ ++ L+  I S
Sbjct: 175 KYLNDIKAFLTENYPDSLLLPISALSGKNIDGLLEYITS 213


>gi|78776593|ref|YP_392908.1| GTP-binding protein EngA [Sulfurimonas denitrificans DSM 1251]
 gi|123550784|sp|Q30TK8|DER_SULDN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78497133|gb|ABB43673.1| GTPase family protein [Sulfurimonas denitrificans DSM 1251]
          Length = 494

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 2/90 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  KI I+G +N GKSSL NAL  ++ ++V+ + GTT D +   ++ +   +   DTAG+
Sbjct: 233 NHIKISIIGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDESMEYKDKQLTFVDTAGL 292

Query: 278 RETDDIV--EKEGIKRTFLEVENADLILLL 305
           R    IV  EK  + RT   +EN+++ L++
Sbjct: 293 RRRGKIVGIEKFALMRTKEMLENSNMALVV 322



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 9/89 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL---TIDLDLEGYLVKISDTAGI 277
           KI I+G  N GKSSLFN L KK  AI +D+ GTTRDV     + ++ E  L+   DT G+
Sbjct: 3   KIAIIGRPNVGKSSLFNRLMKKRDAITSDVAGTTRDVKRRHVVIINKEALLL---DTGGL 59

Query: 278 RETDDIVEKEGIKRTFLE-VENADLILLL 305
            +  ++ +K  IK   LE  + AD+IL +
Sbjct: 60  DQGCELFDK--IKEKSLEAAKKADIILYM 86


>gi|302806046|ref|XP_002984773.1| hypothetical protein SELMODRAFT_121150 [Selaginella moellendorffii]
 gi|300147359|gb|EFJ14023.1| hypothetical protein SELMODRAFT_121150 [Selaginella moellendorffii]
          Length = 490

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRET 280
           + I+G  N GKSS+ NA+  K+  IV+ + GTTRD +  ++   EG + ++ DTAGIR+ 
Sbjct: 210 VAIIGRPNVGKSSILNAIVGKERTIVSPVSGTTRDAIDTEVAGPEGKVFRLIDTAGIRKR 269

Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307
             I       E   ++     +  AD++ L+ E
Sbjct: 270 AAIASGGSKTESLCVQSALRAIRRADVVALVIE 302



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 27/38 (71%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           K+ I+G  N GKS+LFN +  +++AIV D PG TRD L
Sbjct: 9   KVAIVGRPNVGKSALFNRIVGRNMAIVHDEPGVTRDRL 46


>gi|223040568|ref|ZP_03610840.1| HydF [Campylobacter rectus RM3267]
 gi|222878203|gb|EEF13312.1| HydF [Campylobacter rectus RM3267]
          Length = 394

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 10/131 (7%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDD 282
           I G  N GKSS+ N L+ +  +IV+D+ GTT D +   +++ G     + DTAG+ +  +
Sbjct: 13  IFGRRNVGKSSIMNMLSNQSASIVSDVAGTTTDTVQKSIEIHGLGAATLFDTAGVDDAGE 72

Query: 283 IVEKEGIKRTFLEVENADLILLLKEIN--SKKEISF-----PKNIDFIFIGTKSDLYSTY 335
           + EK  I +T   +EN D+ +L+ E N  SK E          N  F+ +  K DL  T 
Sbjct: 73  LGEKR-ILKTNETIENIDIAVLVVENNEFSKFESELIDKFKSLNKPFLLLVNKCDLKETK 131

Query: 336 TEEYDHLISSF 346
             E+ +LI+ F
Sbjct: 132 G-EFLNLINPF 141


>gi|221506372|gb|EEE32007.1| GTP-binding protein, putative [Toxoplasma gondii VEG]
          Length = 428

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 100/240 (41%), Gaps = 42/240 (17%)

Query: 169 RSFIEA--DLDFSEEEDVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIV 223
           R F+ A    +F   ED+   S ++     +     I++H  +    L ++  N + ++ 
Sbjct: 171 RPFVHAFQPREFLNREDLPWLSPEQRKYSRILFGKPIAAHPVLVAQTLHKLPHNPWPQVA 230

Query: 224 ILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDL-------DLEGY-LVKISDT 274
            +GHSN GKSSL NAL   +DVA     PG TR + T DL       DL GY   ++   
Sbjct: 231 AVGHSNVGKSSLLNALMHGRDVARSCSKPGRTRHLFTFDLGNHLSLVDLPGYGFARVKPQ 290

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----KNIDFIFIGTKSD 330
             ++E   I+ +E   R+        L+   K + +  E  +     KN+ F  + TK+D
Sbjct: 291 --LKEEWAILIEEYFTRSKQLRRVLSLVDATKGVEALDERLWQLLAEKNLPFQVVLTKAD 348

Query: 331 LYS----------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           L +                      T    + H +SS    G+ EL   + ++ S+  K+
Sbjct: 349 LLTARELHAAMFDVLSRLQAVEKKETLLHPFVHAVSSRHNHGIPELRASLAAVASDWRKR 408


>gi|13476158|ref|NP_107728.1| GTP-binding protein EngA [Mesorhizobium loti MAFF303099]
 gi|26006731|sp|Q986D9|DER_RHILO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|14026918|dbj|BAB53514.1| GTP-binding protei [Mesorhizobium loti MAFF303099]
          Length = 479

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  NAGKS+L NAL  ++  +     G TRD +++D D  G  +K+ DTAG+R  
Sbjct: 209 RIAVVGRPNAGKSTLINALIGEERLLTGPEAGITRDSISVDWDWHGRRLKLFDTAGMRRK 268

Query: 281 DDIVEK 286
             I EK
Sbjct: 269 ARIHEK 274



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  N GKS+LFN L  + +A+V D PG TRD       L      + DTAG  +
Sbjct: 3   FKVAIIGRPNVGKSTLFNRLVGRKLALVDDTPGVTRDRRVHAAKLYDLHFDVIDTAGFED 62

Query: 280 TDDIVEKEGIK-RTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS 329
                    ++ +T + +  ADLI     I++K  +  P +  F  I  KS
Sbjct: 63  AGASTLPGRMRAQTEIAIHEADLIFF--TIDAKSGL-LPDDRTFAEIVRKS 110


>gi|89099128|ref|ZP_01172007.1| GTP-binding protein EngA [Bacillus sp. NRRL B-14911]
 gi|89086258|gb|EAR65380.1| GTP-binding protein EngA [Bacillus sp. NRRL B-14911]
          Length = 436

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NA+  ++  IV++I GTTRD +   L   G    I DTAG+R+ 
Sbjct: 177 KFSLIGRPNVGKSSLVNAILGEERVIVSNIAGTTRDAVDSLLTYNGDQYVIIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E +D++L++
Sbjct: 237 GKVYESTEKYSVLRALRAIERSDVVLVV 264



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + ++IV DIPG TRD +    +       I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERISIVEDIPGVTRDRIYSSAEWLNLDFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++  ++  + +E AD+IL L
Sbjct: 66  EPFLEQIRQQAEIAIEEADVILFL 89


>gi|237844091|ref|XP_002371343.1| GTP-binding protein, putative [Toxoplasma gondii ME49]
 gi|211969007|gb|EEB04203.1| GTP-binding protein, putative [Toxoplasma gondii ME49]
          Length = 428

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 100/240 (41%), Gaps = 42/240 (17%)

Query: 169 RSFIEA--DLDFSEEEDVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIV 223
           R F+ A    +F   ED+   S ++     +     I++H  +    L ++  N + ++ 
Sbjct: 171 RPFVHAFQPREFLNREDLPWLSPEQRKYSRILFGKPIAAHPVLVAQTLHKLPHNPWPQVA 230

Query: 224 ILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDL-------DLEGY-LVKISDT 274
            +GHSN GKSSL NAL   +DVA     PG TR + T DL       DL GY   ++   
Sbjct: 231 AVGHSNVGKSSLLNALMHGRDVARSCSKPGRTRHLFTFDLGNHLSLVDLPGYGFARVKPQ 290

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----KNIDFIFIGTKSD 330
             ++E   I+ +E   R+        L+   K + +  E  +     KN+ F  + TK+D
Sbjct: 291 --LKEEWAILIEEYFTRSKQLRRVLSLVDATKGVEALDERLWQLLAEKNLPFQVVLTKAD 348

Query: 331 LYS----------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           L +                      T    + H +SS    G+ EL   + ++ S+  K+
Sbjct: 349 LLTARELHAAMFDVLSRLQAVEKKETLLHPFVHAVSSRHNHGIPELRASLAAVASDWRKR 408


>gi|114565878|ref|YP_753032.1| small GTP-binding protein domain-containing protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114336813|gb|ABI67661.1| small GTP-binding protein domain [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 402

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 23/160 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I I G  NAGKSSL NAL ++++A+V+++PGTT D +   ++ L      I DTAG
Sbjct: 8   NRLHIAIFGRRNAGKSSLINALTRQEIALVSEVPGTTTDPVFKAMEILPIGPCMIIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-----------KEINSKKEISFPKNIDFIFI 325
           I +   + E   IK+T   +   DL LL+           KE+   K+    + I  I +
Sbjct: 68  IDDEGQLGELR-IKKTREVLNQTDLALLVIDPALGISEFEKEL---KQAIRSRKIALIGV 123

Query: 326 GTKSDLYSTYTEEYDH-------LISSFTGEGLEELINKI 358
             K+D      +  +         +SS +GEG+E L  +I
Sbjct: 124 LNKTDQGQVDKKSLEKQLGLSLVAVSSRSGEGIEFLKERI 163


>gi|312128379|ref|YP_003993253.1| small gtp-binding protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311778398|gb|ADQ07884.1| small GTP-binding protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 403

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 25/164 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I I G  NAGKSSL NA+  + +AIV+D+PGTT D +   +++   G +V I DTAGI +
Sbjct: 12  IAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKSMEILPLGPVVLI-DTAGI-D 69

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------IGT--KSD 330
            + I+ K  +++T   +   D+ +L+  ++   ++++ K +  +F       IG   K D
Sbjct: 70  DEGILGKLRVEKTLEVLNKTDIAILV--VSDIDDLTYEKQLAALFDEKKVPRIGVLNKID 127

Query: 331 LYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILSN 364
               Y E+   L          +S  T +G++EL N +  ++ +
Sbjct: 128 KDPNYKEKLSFLQSTLGMPFLAVSCVTLKGIDELKNALSKLVPD 171


>gi|239940226|ref|ZP_04692163.1| GTP-binding protein EngA [Streptomyces roseosporus NRRL 15998]
 gi|239986716|ref|ZP_04707380.1| GTP-binding protein EngA [Streptomyces roseosporus NRRL 11379]
 gi|291443657|ref|ZP_06583047.1| GTP-binding protein engA [Streptomyces roseosporus NRRL 15998]
 gi|291346604|gb|EFE73508.1| GTP-binding protein engA [Streptomyces roseosporus NRRL 15998]
          Length = 489

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K G  +    +I ++G  N GKSSL N +A +D  +V ++ GTTRD +   ++L G   K
Sbjct: 218 KFGTALGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELINLGGITWK 277

Query: 271 ISDTAGIR 278
             DTAGIR
Sbjct: 278 FIDTAGIR 285



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 209 QGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +G LGE       ++ ++G  N GKS+L N +  +  A+V D PG TRD ++ + +  G 
Sbjct: 40  EGALGEAGHGPLPVLAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGR 99

Query: 268 LVKISDTAG 276
             K+ DT G
Sbjct: 100 RFKVVDTGG 108


>gi|322380446|ref|ZP_08054647.1| GTP-binding protein EngA [Helicobacter suis HS5]
 gi|321147128|gb|EFX41827.1| GTP-binding protein EngA [Helicobacter suis HS5]
          Length = 348

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL +++ A+V++IPGTT D +   +      +   DTAG+R+ 
Sbjct: 88  QVGIIGRVNVGKSSLLNALIEQERALVSEIPGTTIDPVDQSISHHNQEICFVDTAGLRQR 147

Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305
             +  +EK  + RT   +E + + LL+
Sbjct: 148 SKVEGLEKFALDRTRKVLEKSHIALLV 174


>gi|302808277|ref|XP_002985833.1| hypothetical protein SELMODRAFT_123195 [Selaginella moellendorffii]
 gi|300146340|gb|EFJ13010.1| hypothetical protein SELMODRAFT_123195 [Selaginella moellendorffii]
          Length = 492

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           + I+G  N GKSS+ NA+  K+  IV+ + GTTRD +  ++   EG + ++ DTAGIR+ 
Sbjct: 212 VAIIGRPNVGKSSILNAIVGKERTIVSPVSGTTRDAIDTEVTGPEGKVFRLIDTAGIRKR 271

Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307
             I       E   ++     +  AD++ L+ E
Sbjct: 272 AAIASGGSKTESLCVQSALRAIRRADVVALVIE 304



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 27/38 (71%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           K+ I+G  N GKS+LFN +  +++AIV D PG TRD L
Sbjct: 11  KVAIVGRPNVGKSALFNRIVGRNMAIVHDEPGVTRDRL 48


>gi|163736771|ref|ZP_02144190.1| Small GTP-binding protein domain [Phaeobacter gallaeciensis BS107]
 gi|161390641|gb|EDQ14991.1| Small GTP-binding protein domain [Phaeobacter gallaeciensis BS107]
          Length = 508

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ +
Sbjct: 25  FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVVDTAGLED 84

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TD+ +E    + T   V+ AD+ L +
Sbjct: 85  ATDNSLEGRMRRLTERAVDMADVCLFM 111



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 40/66 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D +   ++I DTAG+R+ 
Sbjct: 224 QVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQIDWQDVPMRIFDTAGMRKK 283

Query: 281 DDIVEK 286
             + EK
Sbjct: 284 AKVQEK 289


>gi|163743210|ref|ZP_02150592.1| GTP-binding protein EngA [Phaeobacter gallaeciensis 2.10]
 gi|161383627|gb|EDQ08014.1| GTP-binding protein EngA [Phaeobacter gallaeciensis 2.10]
          Length = 508

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ +
Sbjct: 25  FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVVDTAGLED 84

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TD+ +E    + T   V+ AD+ L +
Sbjct: 85  ATDNSLEGRMRRLTERAVDMADVCLFM 111



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 40/66 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D +   ++I DTAG+R+ 
Sbjct: 224 QVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQIDWQDVPMRIFDTAGMRKK 283

Query: 281 DDIVEK 286
             + EK
Sbjct: 284 AKVQEK 289


>gi|159043715|ref|YP_001532509.1| GTP-binding protein EngA [Dinoroseobacter shibae DFL 12]
 gi|189037146|sp|A8LHW1|DER_DINSH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157911475|gb|ABV92908.1| small GTP-binding protein [Dinoroseobacter shibae DFL 12]
          Length = 490

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 41/66 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N L  +D  +     G TRD +++ +D +G  V+I DTAG+R+ 
Sbjct: 204 QVAVVGRPNAGKSTLINQLLGEDRLLTGPEAGITRDAISLAMDWDGLPVRIFDTAGMRKK 263

Query: 281 DDIVEK 286
             + EK
Sbjct: 264 AKVQEK 269



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLGDLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TDD ++    + T   V  AD  L L
Sbjct: 63  ATDDSLQGRMRRLTERAVSMADACLFL 89


>gi|54401991|gb|AAV34670.1| ThdF [Escherichia coli]
          Length = 158

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 4/100 (4%)

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDC 400
           +S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+   A L     
Sbjct: 61  LSARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWA 119

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 120 G-ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 158


>gi|20093894|ref|NP_613741.1| HflX family GTPase [Methanopyrus kandleri AV19]
 gi|19886832|gb|AAM01671.1| GTPase of the HflX family [Methanopyrus kandleri AV19]
          Length = 423

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 33/234 (14%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           R G+++V L G++ AGKS+L  AL  + V + + +  T  D  T  +DL+G+ V ++DT 
Sbjct: 186 RLGFELVTLAGYTCAGKSTLMRALTDETVYVDSKMFSTL-DTKTRAVDLDGHRVLLTDTV 244

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL-------LKEINSK--------KEISFPKNI 320
           G  +       E  K T  E   ADL+LL       L EI  K        +EI     I
Sbjct: 245 GFVDNLPHWLVESFKSTLEETAQADLVLLVVDVSDELPEIKRKLRVCHRTLEEIGAEGPI 304

Query: 321 DFIFIGTKSDLYSTYTEE-----------YDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             +    K+DL      E           +  ++S+ TGEGL++L  +++++LS  +K +
Sbjct: 305 --VTALNKADLIGWEEAERRLRELEGYVSHPVVVSAKTGEGLDDLKAEMRTVLSRYWKNV 362

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
              +P     +  +S   +  E+ ++ ++    D +   L ++  +LG + G V
Sbjct: 363 RIELPMRNETMRVVS---KLHELGNVLDERWSNDGVEVFLEVSEKALGTVRGTV 413


>gi|13357944|ref|NP_078218.1| GTP-binding protein EngA [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762344|ref|YP_001752466.1| GTP-binding protein EngA [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920231|ref|ZP_02931603.1| GTP-binding protein EngA [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508601|ref|ZP_02958112.1| GTP-binding protein EngA [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701797|ref|ZP_02971472.1| GTP-binding protein EngA [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|26006745|sp|Q9PQA7|DER_UREPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037169|sp|B1AJ22|DER_UREP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|11280266|pir||B82899 conserved hypothetical ATP/GTP-binding protein UU383 [imported] -
           Ureaplasma urealyticum
 gi|6899367|gb|AAF30793.1|AE002135_9 conserved hypothetical ATP/GTP-binding protein [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827921|gb|ACA33183.1| GTP-binding protein EngA [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902626|gb|EDT48915.1| GTP-binding protein EngA [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182676057|gb|EDT87962.1| GTP-binding protein EngA [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701078|gb|EDU19360.1| GTP-binding protein EngA [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 442

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K  I+G  N GKSSL N +  +   IV    G+TRD +  D +       I DTAGIR 
Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRVIVNAEAGSTRDSIDNDFNYYNKKYTIIDTAGIRR 234

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              I   VEK  + RT   +E + LILL+
Sbjct: 235 KGKIVESVEKYAVLRTKKAIERSQLILLV 263



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK---ISDTAGIR 278
           I I+G  N GKSSLFN +  +  +IV D PG TRD +    D+  +L +   + DT GI 
Sbjct: 4   IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRI---YDIGNWLTRSFMLIDTGGII 60

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
            + D  +    ++    +  A+ I+ L
Sbjct: 61  SSKDTYQDNINEQVLFAINEANTIIFL 87


>gi|223557988|gb|ACM90994.1| GTPase [uncultured bacterium URE4]
          Length = 424

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSL NAL  ++  IVT + GTTRD ++   +  G+   + DTAG+R+  
Sbjct: 167 IAIVGRPNVGKSSLTNALLGEERNIVTPVAGTTRDSISTYYNKFGHEFMLVDTAGMRKRA 226

Query: 282 DIVEK---EGIKRTFLEVENADLILLL 305
            + E      + R    +E++D+ +L+
Sbjct: 227 KVTEDLEFYSVLRAMRTIEHSDVCILM 253



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKS+LFN L     AIV +  G TRD      +  G    + DT G     D V ++ I+
Sbjct: 2   GKSTLFNRLVGMRQAIVDETAGVTRDRHYGKCEWCGTEFSVVDTGGYTSNSDDVFEDAIR 61

Query: 291 R-TFLEVENADLILLLKEINS 310
           R   + VE AD++L + E  +
Sbjct: 62  RQVVIAVEEADVVLFMCEAQT 82


>gi|295100402|emb|CBK97947.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii L2-6]
          Length = 447

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 27/160 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L  + +AIV D PG TRD +  + +  G+   + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWSGHEFLLVDTGGIEPK- 64

Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKEI----------------NSKKEISFPKNI 320
                EGI     ++  + ++ AD I+++ ++                 S K I    N 
Sbjct: 65  ---ATEGILAHMREQAQIAIDTADCIIMVVDVRNGLTAADEDVAHMLRRSHKPIILAVNK 121

Query: 321 DFIFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINKI 358
                 T  +LY  Y   +D +  ISS  G G  +L++ +
Sbjct: 122 CDNVGETPMELYEFYNLGFDEVMPISSVHGHGTGDLLDAV 161



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +  ++  IV +  GTTRD +   +D        +DTAG+R+  
Sbjct: 179 VAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDAIDTPVDNAYGKFIFTDTAGLRKRS 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
           +I   +E+  + R    VE + + L+L
Sbjct: 239 NITDGLERYMVVRALAAVERSRVALIL 265


>gi|294012485|ref|YP_003545945.1| GTP-binding protein EngA [Sphingobium japonicum UT26S]
 gi|292675815|dbj|BAI97333.1| GTP-binding protein EngA [Sphingobium japonicum UT26S]
          Length = 456

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD      +L G    I DTAG  + D
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRREGQANLLGVDFTIIDTAGYEDED 64

Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305
                  ++ +T   VENAD+ L +
Sbjct: 65  PQTLPGRMRMQTQAAVENADVALFV 89



 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 8/93 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEG--YLVKISDTA 275
           K+ I+G  NAGKS+L N L  ++  +     G TRD + +D    D +G    V++ DTA
Sbjct: 186 KLAIVGRPNAGKSTLINRLLGENRLLTGPEAGITRDSIAVDWQWTDPDGNERPVRLIDTA 245

Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           G+R   +  D +EK  +      V  A++++LL
Sbjct: 246 GMRKRAKVQDKLEKLAVSDGLNAVNFAEVVVLL 278


>gi|182439534|ref|YP_001827253.1| GTP-binding protein EngA [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178468050|dbj|BAG22570.1| putative GTP-binding protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 489

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K G  +    +I ++G  N GKSSL N +A +D  +V ++ GTTRD +   ++L G   K
Sbjct: 218 KFGTALGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELINLGGITWK 277

Query: 271 ISDTAGIR 278
             DTAGIR
Sbjct: 278 FIDTAGIR 285



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD ++ + +  G   K+ DT G
Sbjct: 54  LAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGG 108


>gi|306822736|ref|ZP_07456114.1| ribosome-associated GTPase EngA [Bifidobacterium dentium ATCC
           27679]
 gi|309800900|ref|ZP_07695032.1| ribosome biogenesis GTPase Der [Bifidobacterium dentium JCVIHMP022]
 gi|304554281|gb|EFM42190.1| ribosome-associated GTPase EngA [Bifidobacterium dentium ATCC
           27679]
 gi|308222436|gb|EFO78716.1| ribosome biogenesis GTPase Der [Bifidobacterium dentium JCVIHMP022]
          Length = 709

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 17/176 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE-----ISFPKNIDFIFIGTKSDLY 332
           + +E     +  + V+ AD ++L+ +    + S  E     +        + +    D  
Sbjct: 335 EGIESAIASQAQMAVQLADAVVLVVDGQVGLTSTDERIVKMLRASGKPVTLAVNKVDDRE 394

Query: 333 STY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           S Y T E+  +       IS+  G G+ EL++     L    K   F  PSH R +
Sbjct: 395 SEYLTAEFWKMGLGEPYGISAMHGRGIGELLDVALESLKKAKKTSGFLTPSHLRRV 450



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 82/177 (46%), Gaps = 27/177 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID------LDLEGYLVK 270
           ++ ++G  N GKSSL N LA ++ ++V D+ GTTRD    V+T+D      +D  G   +
Sbjct: 449 RVALVGRPNVGKSSLLNQLAHEERSVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGIKRR 508

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLE---------VENADLILLLKEINSKKEISFPKN-I 320
           +   +G      +  +  I+R+ L          + + DL ++ + +++ + I    N  
Sbjct: 509 LHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRAIVLVFNKW 568

Query: 321 DFIFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           D +    +  +   +  E+D +       +S+ TG     L N ++  L +  K++P
Sbjct: 569 DLMDEFDRQRMERLWKTEFDRVTWAQRVNLSAKTGWHTNRLANAMRGALQSWDKRIP 625


>gi|90961863|ref|YP_535779.1| GTP-binding protein EngA [Lactobacillus salivarius UCC118]
 gi|227890889|ref|ZP_04008694.1| GTP-binding protein EngA [Lactobacillus salivarius ATCC 11741]
 gi|122448999|sp|Q1WTQ4|DER_LACS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|90821057|gb|ABD99696.1| GTP-binding protein [Lactobacillus salivarius UCC118]
 gi|227867298|gb|EEJ74719.1| GTP-binding protein EngA [Lactobacillus salivarius ATCC 11741]
 gi|300214593|gb|ADJ79009.1| GTP-binding protein engA [Lactobacillus salivarius CECT 5713]
          Length = 436

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN LA + ++IV D PG TRD +    +  G+   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRLAGERISIVEDTPGVTRDRIYARTEWLGHPFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +  ++  + +E AD+I+ +
Sbjct: 66  EPFLTQITEQAEIAIEEADVIIFV 89



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           K   +G  N GKSSL NA+  ++  IV++I GTTRD +    + E G    + DTAGIR+
Sbjct: 176 KFSFIGRPNVGKSSLVNAILGENRVIVSNIEGTTRDAIDTRFETEDGTKYTMIDTAGIRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    ++ +D++ ++
Sbjct: 236 KGKVYENTEKYSVLRAMRAIDRSDVVCVV 264


>gi|300176539|emb|CBK24204.2| GTP binding protein [Blastocystis hominis]
          Length = 607

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 39/64 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ILG  N+GKS+L N L K D  I   IPG TRD ++ +++     +++ DT GI + 
Sbjct: 314 QLTILGIPNSGKSTLLNTLLKTDRFITGSIPGLTRDTVSTEIEFHNRRIRVVDTPGIPKA 373

Query: 281 DDIV 284
           D ++
Sbjct: 374 DGVL 377



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           N + + ++G +N GKS+LFN L  +  A+V+   GTTRD       + G    + DT G 
Sbjct: 87  NHFSVALVGRTNVGKSTLFNRLVGRRDALVSKEAGTTRDRREGKGHISGLEFTLIDTGGY 146

Query: 277 IRETDDI--VEKEGIKRTFLEVENADLILLL 305
           + E  +I  +E++  K+T   VE AD++  L
Sbjct: 147 VPENKNISLIEQQINKQTEYAVEKADVLFFL 177


>gi|160880522|ref|YP_001559490.1| small GTP-binding protein [Clostridium phytofermentans ISDg]
 gi|189037143|sp|A9KLK7|DER_CLOPH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|160429188|gb|ABX42751.1| small GTP-binding protein [Clostridium phytofermentans ISDg]
          Length = 441

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFNALA   ++IV D PG TRD +  D+        + DT GI  E+
Sbjct: 6   VAVVGRPNVGKSTLFNALAGDRISIVKDTPGVTRDRIYADITWLDKQFTLVDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            D++     ++  + +  AD+I+ + ++
Sbjct: 66  KDMMLTYMREQAEIAIATADVIMFVVDV 93



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKSS+ N L  ++  IV+D+ GTTRD +   +          DTAG+R  
Sbjct: 179 RIAIVGKPNVGKSSIINKLLGENRVIVSDVAGTTRDAIDTAVTWNKKDYVFIDTAGLRRK 238

Query: 281 DDI---VEKEGIKRTFLEVENAD 300
             I   +E+  I RT   VE AD
Sbjct: 239 SKIKEELERFSIIRTVSAVERAD 261


>gi|326780198|ref|ZP_08239463.1| ribosome-associated GTPase EngA [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660531|gb|EGE45377.1| ribosome-associated GTPase EngA [Streptomyces cf. griseus
           XylebKG-1]
          Length = 489

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K G  +    +I ++G  N GKSSL N +A +D  +V ++ GTTRD +   ++L G   K
Sbjct: 218 KFGTALGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELINLGGITWK 277

Query: 271 ISDTAGIR 278
             DTAGIR
Sbjct: 278 FIDTAGIR 285



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD ++ + +  G   K+ DT G
Sbjct: 54  LAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGG 108


>gi|253699692|ref|YP_003020881.1| GTP-binding protein Era [Geobacter sp. M21]
 gi|259645946|sp|C6E2H7|ERA_GEOSM RecName: Full=GTPase Era
 gi|251774542|gb|ACT17123.1| GTP-binding protein Era [Geobacter sp. M21]
          Length = 297

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N +  + + I +D P TTR+ +    ++ G  +   DT G
Sbjct: 7   RSGF-VSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNRIKGIHNVPGGQIVFIDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTK 328
           I      + K  +      V+  DLIL L        KE    KE+    +   I +  K
Sbjct: 66  IHRAKSRLNKFMVDEALSSVQGVDLILFLVDGAVDPEKEAGMIKEVLSGVDAPVILVMNK 125

Query: 329 SDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL          S Y + Y       +S+ TG+G+E+L+  +  +L       P  I +
Sbjct: 126 IDLVPKGELLERMSCYGDTYPFKEIIPVSAGTGDGVEQLVQLVHGLLPEGPCYFPDDILT 185

Query: 376 HKRHLYHLSQTVR 388
                + +++ VR
Sbjct: 186 DVPERFIVAEIVR 198


>gi|331004162|ref|ZP_08327642.1| hypothetical protein HMPREF0491_02504 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411572|gb|EGG90982.1| hypothetical protein HMPREF0491_02504 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 403

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 15/158 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I + G  N GKSSL NA+  +++AIV++I GTT D +   ++L  +  V + DT GI + 
Sbjct: 20  ICLFGRCNVGKSSLINAITSQNIAIVSEIRGTTTDPVKKSMELLPFGPVVLVDTPGIDDE 79

Query: 281 DDIVEKEGIKRTFLEVENADLILLL----KEINSKKEISFPKNI---DFIFIGTKSDLYS 333
             + E   ++++   ++ ADLIL +     EI SK+E+ F + I     I +G K D   
Sbjct: 80  SSLGELR-VQKSMEYIDQADLILFVVDGGSEI-SKEELEFIEKIKEKKHIIVGNKCDSIE 137

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILS---NKFKK 368
              +E    I     + +   I+K+K++++   NK KK
Sbjct: 138 DNKKECKADIYVSATQNIN--IDKLKALMAEILNKGKK 173


>gi|317418209|emb|CBM95518.1| GTP-binding protein-like protein [Helicobacter cetorum]
          Length = 172

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L    V++ DT G+ + +
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINRRKIFLNESEVELLDTGGM-DKN 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ KE         + +DLIL +
Sbjct: 69  VVLSKEIKTFNLKAAQMSDLILYV 92


>gi|313886420|ref|ZP_07820140.1| hydrogenase maturation GTPase HydF [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924136|gb|EFR34925.1| hydrogenase maturation GTPase HydF [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 399

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 23/170 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
           +++++G  N+GKS+LFN L +++ ++V+D  GTT D +    +L     + + DT G+ +
Sbjct: 13  RLLLVGQVNSGKSTLFNRLLRQERSLVSDQAGTTTDSVEKLFELPSVGPILLVDTPGLAD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSDL- 331
            D  +  E  + T L + +ADL+L L  ++ +  +  P        N+  + I  ++DL 
Sbjct: 73  -DTPLGAERQRVTQLALSSADLVLYL--LSCEDSLDTPIIAALRKANVPTLPIIARADLP 129

Query: 332 -YSTYTEEYDHLISSF----------TGEGLEELINKIKSILSNKFKKLP 370
             S++ E  + ++  F            E L+ L+ KIK +L N  +  P
Sbjct: 130 EQSSWLERQEEIVHCFGHAPLSLRQNDDESLDTLLEKIKQMLHNVSEPTP 179


>gi|308535355|ref|YP_003933744.1| GTP-binding protein Era [Geobacter bemidjiensis Bem]
 gi|308052700|gb|ADO00832.1| LOW QUALITY PROTEIN: GTP-binding protein Era [Geobacter
           bemidjiensis Bem]
          Length = 297

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N +  + + I +D P TTR+ +    ++ G  +   DT G
Sbjct: 7   RSGF-VSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNRIKGIHNVPGGQIVFIDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTK 328
           I      + K  +      V+  DLIL L        KE    KE+    +   I +  K
Sbjct: 66  IHRAKSRLNKFMVDEALSSVQGVDLILFLVDGAVDPEKEAGMIKEVLSGVDAPVILVMNK 125

Query: 329 SDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL          S Y + Y       +S+ TG+G+E+L+  +  +L       P  I +
Sbjct: 126 IDLVPKGELLERMSCYGDTYPFKEIIPVSAGTGDGVEQLVQLVHGLLPEGPCYFPDDILT 185

Query: 376 HKRHLYHLSQTVR 388
                + +++ VR
Sbjct: 186 DVPERFIVAEIVR 198


>gi|260428010|ref|ZP_05781989.1| ribosome-associated GTPase EngA [Citreicella sp. SE45]
 gi|260422502|gb|EEX15753.1| ribosome-associated GTPase EngA [Citreicella sp. SE45]
          Length = 487

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  NAGKS+L N +  +D  +     G TRD +++ LD +G  ++I DTAG+R+ 
Sbjct: 203 QIAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISVRLDWDGTPMRIFDTAGMRKR 262

Query: 281 DDIVEK 286
             I EK
Sbjct: 263 AKIQEK 268



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  + +A+V D PG TRD+   +  L      + DTAG+ E
Sbjct: 3   FSLAIVGRPNVGKSTLFNRLVGRRLALVDDQPGVTRDLREGEGKLGDLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TD+ ++    + T   V+ AD+ L +
Sbjct: 63  ATDESLQGRMRRLTERAVDMADVCLFM 89


>gi|257791363|ref|YP_003181969.1| GTP-binding proten HflX [Eggerthella lenta DSM 2243]
 gi|257475260|gb|ACV55580.1| GTP-binding proten HflX [Eggerthella lenta DSM 2243]
          Length = 436

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 21/186 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +K+ + G++NAGKSSL N L   DV +  D    T D  T   +L EG  + ++DT G  
Sbjct: 217 FKVALAGYTNAGKSSLLNRLTNADV-LAYDKLFATLDSTTRKFELPEGREITVTDTVGFI 275

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEIS---------FPKNIDFIFIG 326
           +       E  K T  E+  ADL+L + + +S   + +I+           +++  + + 
Sbjct: 276 QKLPTTLIEAFKSTLDEITGADLVLHVVDASSDEYEAQIAAVEDVLGQIHAQDLSRVLVF 335

Query: 327 TKSDLYS-------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL                  +S+ TGEG+ EL+  +  + S + + L   IP ++  
Sbjct: 336 NKCDLLGEERLGALKARHPQAQFVSAATGEGVGELVEHVARVASAQDEHLDVLIPYNRGD 395

Query: 380 LYHLSQ 385
           L  ++ 
Sbjct: 396 LVSVAH 401


>gi|153809519|ref|ZP_01962187.1| hypothetical protein BACCAC_03837 [Bacteroides caccae ATCC 43185]
 gi|149127827|gb|EDM19050.1| hypothetical protein BACCAC_03837 [Bacteroides caccae ATCC 43185]
          Length = 408

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 2/88 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V+D PGTT D +   +++ G       DT G
Sbjct: 10  NRLHIALFGRRNSGKSSLINALTGQDTALVSDTPGTTTDPVAKAMEIHGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILL 304
             +  ++  +  I+RT+  VE  D+ +L
Sbjct: 70  FDDEGEL-GRMRIERTWKAVEKTDMAIL 96


>gi|301299471|ref|ZP_07205746.1| ribosome-associated GTPase EngA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852934|gb|EFK80543.1| ribosome-associated GTPase EngA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 436

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN LA + ++IV D PG TRD +    +  G+   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRLAGERISIVEDTPGVTRDRIYARTEWLGHPFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +  ++  + +E AD+I+ +
Sbjct: 66  EPFLTQITEQAEIAIEEADVIIFV 89



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 6/98 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           K   +G  N GKSSL NA+  ++  IV++I GTTRD +    + E G    + DTAGIR+
Sbjct: 176 KFSFIGRPNVGKSSLVNAILGENRVIVSNIEGTTRDAIDTRFETEDGTKYTMIDTAGIRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
              +    EK  + R    ++ +D++ ++  +N++++I
Sbjct: 236 KGKVYENTEKYSVLRAMRAIDRSDVVCVV--LNAEEDI 271


>gi|146340695|ref|YP_001205743.1| GTP-binding protein EngA [Bradyrhizobium sp. ORS278]
 gi|166224310|sp|A4YUE1|DER_BRASO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|146193501|emb|CAL77517.1| GTP-binding protein, essential for cell growth [Bradyrhizobium sp.
           ORS278]
          Length = 456

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 29/179 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N L  ++  + +   GTTRD + ++++ +G   +I DTAG+R  
Sbjct: 186 RVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTRDSIAVEVEWKGRGFRIFDTAGLRRR 245

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------FIFIGTKS 329
             I   +EK  +      V  A++++L+ +  ++ E    +  D         +    K 
Sbjct: 246 SRIEEKLEKLSVADALRAVRFAEVVVLMLDAQNRFEEQDLRIADLVEREGRALVLAVNKW 305

Query: 330 DLY-------STYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           DL        S    + DH            +S   GEG++ L+  I    +   +++P
Sbjct: 306 DLMEAQPGQISALRRDADHWLPQITGAPIVAVSGLMGEGIDRLMQAIVEAYAVWNRRVP 364



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 35/60 (58%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I I+G  N GKS+LFN L  + +A+V D+PG TRD    +  L      I DTAG+ E
Sbjct: 3   FTIAIIGRPNVGKSTLFNRLVGQKLALVDDMPGVTRDRREGEAKLHDLHFTIIDTAGLDE 62


>gi|325116849|emb|CBZ52402.1| putative small GTP-binding protein [Neospora caninum Liverpool]
          Length = 917

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 22/154 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + ++G  NAGKS+L N+L +++  +V   PGTT D +      +G+  ++ DTAG+    
Sbjct: 605 VAVIGRPNAGKSTLVNSLLQEERMVVDSQPGTTTDAVGTLWTFQGHPFRLIDTAGVTRGW 664

Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335
             R TD ++E  G++ T   + NA + +L  + +  ++   P               S++
Sbjct: 665 KMRHTDLLLEA-GLQ-TLRNIRNAQVCILCIDASLARDTGQP--------------ISSH 708

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                HL S   G  L   + K   +  N+ +KL
Sbjct: 709 ELALAHLASEKEGRCLAVCVTKWDLVPENEREKL 742


>gi|4467683|emb|CAB37793.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ + I +D  GTTRD     + L  + V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERMPITSDFAGTTRDFNKRKIALNAHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLI 302
            ++ KE         + +DLI
Sbjct: 69  ALLSKEIKALNLKAAQMSDLI 89


>gi|317495247|ref|ZP_07953617.1| GTP-binding protein Era [Gemella moribillum M424]
 gi|316914669|gb|EFV36145.1| GTP-binding protein Era [Gemella moribillum M424]
          Length = 302

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 24/197 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKIS 272
           E I+ G+ + I+G  NAGKS+L N + K+ +AI++D P TTR+++  +  D +  +V I 
Sbjct: 4   EQIKTGF-VTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRNIINGVYTDQDSQIVFI- 61

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP--- 317
           DT GI +    +    +K     ++ ++++ L+              IN  KE++ P   
Sbjct: 62  DTPGIHKPKHRLGDYMMKLASSAIQESEIVYLIINAGEKFGPGDQHLINIVKELNVPTFL 121

Query: 318 --KNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371
               ID I      ++ S Y + YD +    IS+     ++ L+N  K  L   +K  P 
Sbjct: 122 LINKIDLISPEKLIEIISFYKDLYDFVEIVPISALKSINVDNLLNVTKKYLQLSYKMYPD 181

Query: 372 SIPSHKRHLYHLSQTVR 388
            + +     + +S+ +R
Sbjct: 182 DVITDSPEYFVISEFIR 198


>gi|81428627|ref|YP_395627.1| GTP-binding protein EngA [Lactobacillus sakei subsp. sakei 23K]
 gi|123564226|sp|Q38WW3|DER_LACSS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78610269|emb|CAI55318.1| Putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K]
          Length = 436

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRE 279
           K  ++G  N GKSSL NA+ K+D  IV+ I GTTRD +      E      + DTAGIR+
Sbjct: 176 KFSLIGRPNVGKSSLVNAMLKEDRVIVSQIEGTTRDAIDTKFMAENNQEFTMIDTAGIRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    ++ +D++L++
Sbjct: 236 RGKVYENTEKYAVMRALRAIDRSDVVLVV 264



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 49/84 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G+   + DT GI  +D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTASEWLGHEFSLIDTGGIEISD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++  ++  + ++ AD+I+ L
Sbjct: 66  APFMEQIKQQAEIAIDEADVIIFL 89


>gi|260855974|ref|YP_003229865.1| putative GTP-binding protein [Escherichia coli O26:H11 str. 11368]
 gi|257754623|dbj|BAI26125.1| predicted GTP-binding protein [Escherichia coli O26:H11 str. 11368]
 gi|323155669|gb|EFZ41841.1| hypothetical protein ECEPECA14_2445 [Escherichia coli EPECa14]
          Length = 290

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L +I R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKITRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|258516219|ref|YP_003192441.1| GTP-binding protein Era [Desulfotomaculum acetoxidans DSM 771]
 gi|257779924|gb|ACV63818.1| GTP-binding protein Era [Desulfotomaculum acetoxidans DSM 771]
          Length = 300

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ + I+G  N GKS+L N +  + +AI++D P TTR  +   L  + Y V   D
Sbjct: 5   EQFRSGF-VAIIGRPNVGKSTLMNRMIGRKIAIMSDKPQTTRHKIYCVLTRDNYQVIFLD 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           T GI +    + +  +  +       DLIL L E NS
Sbjct: 64  TPGIHKPKHKLGQHLVDTSLSTFGEVDLILFLVEANS 100


>gi|126739021|ref|ZP_01754715.1| GTP-binding protein EngA [Roseobacter sp. SK209-2-6]
 gi|126719638|gb|EBA16346.1| GTP-binding protein EngA [Roseobacter sp. SK209-2-6]
          Length = 489

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEAKLGDLRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TD+ +E    + T   V+ AD+ L +
Sbjct: 63  ATDNSLEGRMRRLTERAVDMADICLFM 89



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 40/66 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D  G  ++I DTAG+R+ 
Sbjct: 205 QVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQVDWSGTPMRIFDTAGMRKK 264

Query: 281 DDIVEK 286
             + EK
Sbjct: 265 AKVQEK 270


>gi|91205994|ref|YP_538349.1| GTP-binding protein Era [Rickettsia bellii RML369-C]
 gi|122425285|sp|Q1RHA4|ERA_RICBR RecName: Full=GTPase Era
 gi|91069538|gb|ABE05260.1| GTP-binding protein Era [Rickettsia bellii RML369-C]
          Length = 295

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 20/165 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L    + + DT 
Sbjct: 5   IQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLNDTQIILYDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL----LKEINSKKEISFPK----NIDFIFIGT 327
           GI E    +EK  ++  +  + +AD+++L    LK ++S       K    N+  +F+  
Sbjct: 65  GIFEPKGTLEKAMVRCAWSSLHSADIVMLIIDSLKPLDSITHDILNKLRSLNVVPVFLLN 124

Query: 328 KSDLYSTY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360
           K D+ S Y         E Y D L   IS+ +GE +++L+  I S
Sbjct: 125 KIDVESKYIDDTKAFLAENYSDSLLFPISAISGENVDKLLEYITS 169


>gi|325831411|ref|ZP_08164665.1| GTP-binding protein HflX [Eggerthella sp. HGA1]
 gi|325486665|gb|EGC89113.1| GTP-binding protein HflX [Eggerthella sp. HGA1]
          Length = 436

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 21/186 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +K+ + G++NAGKSSL N L   DV +  D    T D  T   +L EG  + ++DT G  
Sbjct: 217 FKVALAGYTNAGKSSLLNRLTNADV-LAYDKLFATLDSTTRKFELPEGREITVTDTVGFI 275

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEIS---------FPKNIDFIFIG 326
           +       E  K T  E+  ADL+L + + +S   + +I+           +++  + + 
Sbjct: 276 QKLPTTLIEAFKSTLDEITGADLVLHVVDASSDEYEAQIAAVEDVLGQIHAQDLSRVLVF 335

Query: 327 TKSDLYS-------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL                  +S+ TGEG+ EL+  +  + S + + L   IP ++  
Sbjct: 336 NKCDLLGEERLGALKARHPQAQFVSAATGEGVGELVEHVARVASAQDEHLDVLIPYNRGD 395

Query: 380 LYHLSQ 385
           L  ++ 
Sbjct: 396 LVSVAH 401


>gi|172034949|ref|YP_001801450.1| ferrous iron transport protein B [Cyanothece sp. ATCC 51142]
 gi|171696403|gb|ACB49384.1| ferrous iron transport protein B [Cyanothece sp. ATCC 51142]
          Length = 664

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 4/149 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  N GKS+LFN +     A V + PG T D+L  +++LEG  V+  D  GI + 
Sbjct: 19  RVGVLGMPNVGKSTLFNQITGAS-AFVGNWPGVTVDLLEAEVELEGETVEFVDLPGIYDL 77

Query: 281 DDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +   E E + + F E    +L+L +L      ++I     +    +G    L     +E 
Sbjct: 78  EGYSEDERVVQDFFERFPVNLVLVVLNAGQIDRQIRLALQVK--ALGIPGILILNMVDEA 135

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKK 368
           +H       + LEE +    +++S K+ +
Sbjct: 136 NHFGIDIDSQKLEEKLGMPVALVSAKYNR 164


>gi|171742925|ref|ZP_02918732.1| hypothetical protein BIFDEN_02042 [Bifidobacterium dentium ATCC
           27678]
 gi|283456054|ref|YP_003360618.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           dentium Bd1]
 gi|171278539|gb|EDT46200.1| hypothetical protein BIFDEN_02042 [Bifidobacterium dentium ATCC
           27678]
 gi|283102688|gb|ADB09794.1| Bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           dentium Bd1]
          Length = 709

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 17/176 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE-----ISFPKNIDFIFIGTKSDLY 332
           + +E     +  + V+ AD ++L+ +    + S  E     +        + +    D  
Sbjct: 335 EGIESAIASQAQMAVQLADAVVLVVDGQVGLTSTDERIVKMLRASGKPVTLAVNKVDDRE 394

Query: 333 STY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           S Y T E+  +       IS+  G G+ EL++     L    K   F  PSH R +
Sbjct: 395 SEYLTAEFWKMGMGEPYGISAMHGRGIGELLDVALESLKKAKKTSGFLTPSHLRRV 450



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 82/177 (46%), Gaps = 27/177 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID------LDLEGYLVK 270
           ++ ++G  N GKSSL N LA ++ ++V D+ GTTRD    V+T+D      +D  G   +
Sbjct: 449 RVALVGRPNVGKSSLLNQLAHEERSVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGIKRR 508

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLE---------VENADLILLLKEINSKKEISFPKN-I 320
           +   +G      +  +  I+R+ L          + + DL ++ + +++ + I    N  
Sbjct: 509 LHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRAIVLVFNKW 568

Query: 321 DFIFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           D +    +  +   +  E+D +       +S+ TG     L N ++  L +  K++P
Sbjct: 569 DLMDEFDRQRMERLWKTEFDRVTWAQRVNLSAKTGWHTNRLANAMRGALESWDKRIP 625


>gi|145351972|ref|XP_001420333.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580567|gb|ABO98626.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 555

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 55/217 (25%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE----GYLVKISDTAGI 277
           + I+G  N GKSSL N LA +  +IV+D  GTTRD  +ID  +E    G    + DTAGI
Sbjct: 285 VAIIGRPNVGKSSLLNGLAGEARSIVSDFSGTTRD--SIDTLVEDKYTGRKFTLIDTAGI 342

Query: 278 RETDDI------VEKEGIKRTFLEVENADLILLL---KEINSKK-----EISFPKNIDFI 323
           R    +       EK  + R    ++ AD+++L+    E  S++     E +  +    +
Sbjct: 343 RRRTQVKSGTDGAEKLSVGRALQAMKRADVVVLVIDGTEGPSQQDFVLAERATQEGCAIV 402

Query: 324 FIGTKSDL-------YSTYTE---------EYDHLI--SSFTGEGLEELINKIKSILSNK 365
               K DL        + YT+         EY  ++  S+ TG+ ++++++  +    N 
Sbjct: 403 LCINKWDLVDKDTHTMNKYTDDMRLKLRVFEYAEIVYTSALTGQRIQKILDAAQVASENH 462

Query: 366 FK-----------------KLPFSIPSHKRHLYHLSQ 385
            K                 KLP S  S K  +Y+++Q
Sbjct: 463 RKRLTTATLNSVVQEATLWKLPPSRNSRKGKIYYITQ 499



 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           ++ ++G  N GKS+LFN L     AIV D PG TRD + +      +   + DT G+
Sbjct: 88  RVAVVGRPNVGKSALFNRLTGTKRAIVYDEPGVTRDRMYVRAYWGEHEFMMVDTGGL 144


>gi|158339018|ref|YP_001520195.1| GTP-binding protein EngA [Acaryochloris marina MBIC11017]
 gi|189037135|sp|B0C1P2|DER_ACAM1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|158309259|gb|ABW30876.1| GTP-binding protein engA [Acaryochloris marina MBIC11017]
          Length = 453

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKSSL NA   ++ +IV+ I GTTRD + + +       +  DTAGIR  
Sbjct: 178 KVALVGRPNVGKSSLLNAFVGENRSIVSPISGTTRDTIDMVVRRGEQTYRFIDTAGIRRK 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
            ++    E  GI R F  +  + ++L +
Sbjct: 238 KNVSYGPEFFGINRAFKAIRRSQVVLFV 265


>gi|157826642|ref|YP_001495706.1| GTP-binding protein Era [Rickettsia bellii OSU 85-389]
 gi|189037663|sp|A8GUZ8|ERA_RICB8 RecName: Full=GTPase Era
 gi|157801946|gb|ABV78669.1| GTP-binding protein Era [Rickettsia bellii OSU 85-389]
          Length = 295

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 20/165 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L    + + DT 
Sbjct: 5   IQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLNDTQIILYDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL----LKEINSKKEISFPK----NIDFIFIGT 327
           GI E    +EK  ++  +  + +AD+++L    LK ++S       K    N+  +F+  
Sbjct: 65  GIFEPKGTLEKAMVRCAWSSLHSADIVMLIIDSLKPLDSITHDILNKLRSLNVVPVFLLN 124

Query: 328 KSDLYSTY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360
           K D+ S Y         E Y D L   IS+ +GE +++L+  I S
Sbjct: 125 KIDVESKYIDDTKAFLAENYSDSLLFPISAISGENVDKLLEYITS 169


>gi|77919006|ref|YP_356821.1| GTP-binding protein Era [Pelobacter carbinolicus DSM 2380]
 gi|77545089|gb|ABA88651.1| GTP-binding protein Era [Pelobacter carbinolicus DSM 2380]
          Length = 303

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 24/168 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N++  + +AI ++ P TTR+ +    +     V   DT G
Sbjct: 12  RSGF-VAIIGRPNVGKSTLLNSVLGQKIAITSNKPQTTRNRILGIYNQPDAQVLFLDTPG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++ +  + +      + D++L+L E N +         +++S   N+  I +  
Sbjct: 71  VHKAKGMLNRYMVDQALSTCGDVDVVLMLVEANDRLGGGDDYVLEQVSR-SNVPVILVIN 129

Query: 328 KSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSIL 362
           K D         L   YT +Y       +S+ TGEG E+L++ +   L
Sbjct: 130 KVDLIHRPELLPLIEAYTGKYAFSEIIPVSALTGEGTEQLVSSLVKYL 177


>gi|330898613|gb|EGH30032.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 152

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
           GEGLE L   +K+ +  + +    S  + +RHL  L      LE   A L     G +++
Sbjct: 60  GEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAGAG-ELL 117

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 118 AEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 152


>gi|329116373|ref|ZP_08245090.1| ribosome biogenesis GTPase Der [Streptococcus parauberis NCFD 2020]
 gi|326906778|gb|EGE53692.1| ribosome biogenesis GTPase Der [Streptococcus parauberis NCFD 2020]
          Length = 436

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTSFKDEDGQEFTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +    EK  + R    ++ +D++L++  IN+++ I                       EY
Sbjct: 239 VYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  ++
Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTL 299



 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 66  APFMEQIKHQAQIAMDEADVIVFV 89


>gi|86138474|ref|ZP_01057048.1| GTP-binding protein EngA [Roseobacter sp. MED193]
 gi|85824999|gb|EAQ45200.1| GTP-binding protein EngA [Roseobacter sp. MED193]
          Length = 489

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TD+ +E    + T   V+ AD+ L +
Sbjct: 63  VTDNSLEGRMRRLTERAVDMADICLFM 89



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 41/66 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D  G  ++I DTAG+R+ 
Sbjct: 205 QVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQIDWSGTPMRIFDTAGMRKK 264

Query: 281 DDIVEK 286
             ++EK
Sbjct: 265 AKVLEK 270


>gi|241890023|ref|ZP_04777321.1| GTP-binding protein Era [Gemella haemolysans ATCC 10379]
 gi|241863645|gb|EER68029.1| GTP-binding protein Era [Gemella haemolysans ATCC 10379]
          Length = 302

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 24/197 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKIS 272
           E I+ G+ + I+G  NAGKS+L N + K+ +AI++D P TTR+++  +  D +  +V I 
Sbjct: 4   EQIKTGF-VTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRNIINGVYTDNDSQIVFI- 61

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP--- 317
           DT GI +    +    +K     ++ ++++ L+              IN  KE+  P   
Sbjct: 62  DTPGIHKPKHRLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFL 121

Query: 318 --KNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371
               ID I       +   Y + YD +    IS+     ++ L+N  K  L   FK  P 
Sbjct: 122 LINKIDLISPEQLIQIIEFYKDLYDFVEIVPISALKSINVDNLLNTTKKYLQPSFKMYPD 181

Query: 372 SIPSHKRHLYHLSQTVR 388
            + +     + +S+ +R
Sbjct: 182 DVITDSPEYFVISEFIR 198


>gi|154487333|ref|ZP_02028740.1| hypothetical protein BIFADO_01183 [Bifidobacterium adolescentis
           L2-32]
 gi|154083851|gb|EDN82896.1| hypothetical protein BIFADO_01183 [Bifidobacterium adolescentis
           L2-32]
          Length = 709

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 21/185 (11%)

Query: 217 RNGYKIV----ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           +NG K V    ++G  N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ 
Sbjct: 266 KNGPKPVGVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWCGTDFKLV 325

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILL-------LKEINSK--KEISFPKNIDFI 323
           DT G     + +E     +  + V+ AD ++L       L + + +  K +        +
Sbjct: 326 DTGGWEADVEGIESAIASQAQIAVQLADAVILVVDGLVGLTDTDERIVKMLRAAGKPVTL 385

Query: 324 FIGTKSDLYSTY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            +    D  S Y T E+  +       IS+  G G+ EL++     L    +   F  PS
Sbjct: 386 AVNKVDDRESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALDSLKKAERTSGFLTPS 445

Query: 376 HKRHL 380
           H R +
Sbjct: 446 HLRRV 450



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 31/179 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGI- 277
           ++ ++G  N GKSSL N LA ++  +V D+ GTTRD +   + +D E +L    DTAGI 
Sbjct: 449 RVALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWL--FIDTAGIK 506

Query: 278 RETDDIVEKEGIK--RTFLEVENADLILLL----KEINSKKEISFPKNID----FIFIGT 327
           R    +   E     RT   +E ++L L+L    + I+ +      + +D     + +  
Sbjct: 507 RRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRCIVLVFN 566

Query: 328 KSDLYST---------YTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           K DL            +  E++ +       +S+ TG     L N ++  L++  K++P
Sbjct: 567 KWDLMDEFDRQRMERLWKTEFNRVTWAQRVNLSAKTGWHTNRLANAMRGALASWDKRIP 625


>gi|88855492|ref|ZP_01130156.1| GTP-binding protein EngA [marine actinobacterium PHSC20C1]
 gi|88815399|gb|EAR25257.1| GTP-binding protein EngA [marine actinobacterium PHSC20C1]
          Length = 506

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 3/107 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ILG  N GKSSL N  A ++  +V ++ GTTRD +   ++L G   +  DTAGIR  
Sbjct: 246 RVAILGRPNVGKSSLLNKTAGEERVVVNELAGTTRDPVDEQIELGGKFWRFVDTAGIRRR 305

Query: 281 DDIVEKE---GIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
             + +        RT   +E A++ +++ +++    +   K +D + 
Sbjct: 306 VALAQGADFYATLRTSAALEKAEVAVVIFDVSQPLSVQDLKIVDLVL 352



 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 39/84 (46%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD +    +       I DT G     
Sbjct: 73  LAIVGRPNVGKSALVNRIIGRREAVVEDTPGVTRDRVNYKAEWNNRHFTIVDTGGWEPDA 132

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     +  + ++ AD +L +
Sbjct: 133 KGIDASVAAQAEIAIDLADAVLFV 156


>gi|157828884|ref|YP_001495126.1| GTP-binding protein EngA [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|166225852|sp|A8GT93|DER_RICRS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157801365|gb|ABV76618.1| GTP-binding protein EngA [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 447

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDEHP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + + K  I++T   +  ADLI  + +  S
Sbjct: 66  NSMGKRLIEQTTKAILEADLICFMVDARS 94



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K+ DTAG+R+ 
Sbjct: 181 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240

Query: 281 DDIVE 285
             I E
Sbjct: 241 STITE 245


>gi|306818602|ref|ZP_07452325.1| ribosome-associated GTPase EngA [Mobiluncus mulieris ATCC 35239]
 gi|304648775|gb|EFM46077.1| ribosome-associated GTPase EngA [Mobiluncus mulieris ATCC 35239]
          Length = 526

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N+LA    ++V+D PGTTRD +   L+L+G      DTAGI+
Sbjct: 267 RVALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVDEVLELDGKEWVFVDTAGIK 324



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + VA+V D PG TRD +  D D  G    + DT G     
Sbjct: 93  VAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVGV 152

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
             ++K    +  + +E AD+ L + + N
Sbjct: 153 KGLDKAVATQAEIAIEMADVSLFVVDAN 180


>gi|307700914|ref|ZP_07637939.1| ribosome-associated GTPase EngA [Mobiluncus mulieris FB024-16]
 gi|307613909|gb|EFN93153.1| ribosome-associated GTPase EngA [Mobiluncus mulieris FB024-16]
          Length = 524

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N+LA    ++V+D PGTTRD +   L+L+G      DTAGI+
Sbjct: 265 RVALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVDEVLELDGKEWVFVDTAGIK 322



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + VA+V D PG TRD +  D D  G    + DT G     
Sbjct: 91  VAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVGV 150

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
             ++K    +  + +E AD+ L + + N
Sbjct: 151 KGLDKAVATQAEIAIEMADVSLFVVDAN 178


>gi|254466194|ref|ZP_05079605.1| GTP-binding protein EngA [Rhodobacterales bacterium Y4I]
 gi|206687102|gb|EDZ47584.1| GTP-binding protein EngA [Rhodobacterales bacterium Y4I]
          Length = 487

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TD+ +E    + T   V+ AD+ L +
Sbjct: 63  ATDNSLEGRMRRLTERAVDMADICLFM 89



 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 40/66 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N +  ++  +     G TRD +++ ++  G  +++ DTAG+R+ 
Sbjct: 203 QVAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLKINWNGVPMRVFDTAGMRKK 262

Query: 281 DDIVEK 286
             + EK
Sbjct: 263 AKVQEK 268


>gi|159466536|ref|XP_001691465.1| iron hydrogenase assembly protein [Chlamydomonas reinhardtii]
 gi|46403155|gb|AAS92601.1| Fe-hydrogenase assembly protein [Chlamydomonas reinhardtii]
 gi|158279437|gb|EDP05198.1| iron hydrogenase assembly protein [Chlamydomonas reinhardtii]
          Length = 1151

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I + G  NAGKS+L NALA+++  IV   PGTT DV T+ L+L      K+ DTAG+ E 
Sbjct: 678 IGVFGVMNAGKSTLVNALAQQEACIVDSTPGTTADVKTVLLELHALGPAKLLDTAGLDEV 737

Query: 281 DDIVEKEGIK--RTFLEVENADLIL 303
             + +K+  K   T  E + A L++
Sbjct: 738 GGLGDKKRRKALNTLKECDVAVLVV 762


>gi|307294125|ref|ZP_07573969.1| ribosome-associated GTPase EngA [Sphingobium chlorophenolicum L-1]
 gi|306880276|gb|EFN11493.1| ribosome-associated GTPase EngA [Sphingobium chlorophenolicum L-1]
          Length = 456

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD       L G    I DTAG  + D
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRREGQASLLGVDFTIIDTAGYEDED 64

Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305
                  ++ +T   VENAD+ L +
Sbjct: 65  PQTLPGRMRMQTQAAVENADVALFV 89



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 8/93 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGYLVKISDTA 275
           K+ I+G  NAGKS+L N L  ++  +     G TRD + +D      D +   V++ DTA
Sbjct: 186 KLAIVGRPNAGKSTLINRLLGENRLLTGPEAGITRDSIAVDWQWTSPDGQERPVRLIDTA 245

Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           G+R   +  D +EK  +      V  A++++LL
Sbjct: 246 GMRKRAKVQDKLEKLAVSDGLNAVNFAEVVVLL 278


>gi|303327684|ref|ZP_07358124.1| GTP-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862045|gb|EFL84979.1| GTP-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 416

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 14/148 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           I + G  NAGKSSL NAL+ + V+IV+D PGTT D +  T+++   G +V + DTAG+ +
Sbjct: 12  IALFGRRNAGKSSLLNALSGQPVSIVSDTPGTTTDPVEKTLEMAPLGPVVFL-DTAGL-D 69

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE--INSKKE-----ISFPKNIDFIFIGTKSDLY 332
            D  + +   +R+   +   D+ LL+ +  I  + E           I F+ +  K+D  
Sbjct: 70  DDGELGRLRAERSLEIMRRTDVALLVTDGRIWGRTEAAAAARLRSLAIPFVVVRNKADAD 129

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKS 360
           S   E  D   +    EGL+  +  I++
Sbjct: 130 SGAKETTD---APDRPEGLDAAVPVIRA 154


>gi|255292050|dbj|BAH90531.1| GTP-binding protein EngA [uncultured bacterium]
          Length = 466

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ET 280
           ++G  NAGKS+L N L  +   I + +PGTTRD + + + L+G    + DTAG+R   + 
Sbjct: 181 VVGRPNAGKSTLINRLLGQSRLIESPLPGTTRDCVRVPVQLDGRDCLLLDTAGLRRRAQV 240

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            + +EK  + +T   ++ A +++L+
Sbjct: 241 HEAIEKFSVVKTLQAIDLAQVVVLV 265



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I +LG  N GKS+LFN L +   A+V D PG TRD L     L      + DT G+
Sbjct: 5   IALLGRPNVGKSTLFNRLTRTRDALVADFPGVTRDRLVGSGQLGDRPFWVVDTGGL 60


>gi|87198885|ref|YP_496142.1| GTP-binding protein EngA [Novosphingobium aromaticivorans DSM
           12444]
 gi|123490336|sp|Q2GA15|DER_NOVAD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|87134566|gb|ABD25308.1| Small GTP-binding protein domain [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 461

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 36/61 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +++I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG  + 
Sbjct: 4   QVIIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRFGDASLLGLDFTIVDTAGWEDE 63

Query: 281 D 281
           D
Sbjct: 64  D 64



 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-----EGYL-VKISDT 274
           K+ I+G  NAGKS+L N L  +D  +     G TRD + ID        E Y  V++ DT
Sbjct: 191 KLAIVGRPNAGKSTLINKLLGEDRLLTGPEAGITRDSIAIDWQWFDPEREAYRPVRLIDT 250

Query: 275 AGIRETDDIVEK 286
           AG+R+   + +K
Sbjct: 251 AGMRKKAQVTDK 262


>gi|73662580|ref|YP_301361.1| GTP-binding protein EngA [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642627|sp|Q49XS9|DER_STAS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|72495095|dbj|BAE18416.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 436

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD +  +   +     + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAVDTEYSYDDQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E +++IL++
Sbjct: 237 GKVYENTEKYSVLRALKAIERSNVILIV 264



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + ++ AD+I+ +
Sbjct: 66  APFQTQIRAQAEVAIDEADVIIFM 89


>gi|156086578|ref|XP_001610698.1| GTPase [Babesia bovis T2Bo]
 gi|154797951|gb|EDO07130.1| GTPase, putative [Babesia bovis]
          Length = 622

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 35/213 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV-------AIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + +LG SN GKSSLFNALA  +V       ++V+  PGTTRD     + ++G  + + DT
Sbjct: 3   VTLLGRSNVGKSSLFNALAGSNVSVPKFMKSVVSSNPGTTRDAKYGQIFIKGKRITLVDT 62

Query: 275 AGIRETDDIVEKEGIKRT-----FLEVENA-------DLILLLKEINSKKEISFPKNIDF 322
            GI   +  V   G+  +     F  +E+A       DL+L +  ++ ++ I+    +D 
Sbjct: 63  GGI---ESAVMPPGLGSSSCSNRFSILEHALKTAGRSDLVLFV--VDGQEGIT---PLDM 114

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK---KLPFSIPSHKRH 379
                  D  S+ +     +++    EG EE    +   +S+ +      P  + +H R 
Sbjct: 115 TIASNLKDQCSSTSSVLKLVVNKLDSEGSEEYYEAVSKCISDCYSLGLGDPIFVSTHDR- 173

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
             H +Q +R +   SLN      D+I+   RLA
Sbjct: 174 --HGAQRLRSIISKSLNISSG--DVISRLERLA 202


>gi|109123865|ref|XP_001113573.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
           [Macaca mulatta]
          Length = 158

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 5/101 (4%)

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKD 399
           L+S  TGEGL+ L+  ++  L+          P  +  RH +HL   +  L       KD
Sbjct: 61  LLSCLTGEGLDGLLEALRKELAAVCGDPSTGSPLLTRARHQHHLQGCLDALSHYK-PSKD 119

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 120 --LALAAEALRVARGHLTRLTGGGGTEEILDIIFRDFCVGK 158


>gi|116511562|ref|YP_808778.1| GTP-binding protein EngA [Lactococcus lactis subsp. cremoris SK11]
 gi|125624594|ref|YP_001033077.1| GTP-binding protein EngA [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|123320527|sp|Q030L6|DER_LACLS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166198724|sp|A2RM49|DER_LACLM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|116107216|gb|ABJ72356.1| Predicted GTPase [Lactococcus lactis subsp. cremoris SK11]
 gi|124493402|emb|CAL98376.1| putative phosphoglycerate dehydrogenase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071385|gb|ADJ60785.1| GTP-binding protein EngA [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 436

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 40/213 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + I GTTRD + T  +D E     + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTHFVDSEDQEFVMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  I    EK  + R    ++ +D++L++  IN+++ I                      
Sbjct: 236 SGKIYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            EYD  I+ F    G+G+  ++NK  ++   ++  KK    I +  + L +    + Y+ 
Sbjct: 272 REYDMRIAGFAHEAGKGILIVVNKWDTLEKDNDTMKKFELEIRTKFKFLDY--APIVYVS 329

Query: 392 MASLNEKDCGLDII-----AENLRLASVSLGKI 419
             +    +   D+I     A+NLR++S  L  +
Sbjct: 330 AKTGQRLNKLPDMIKEIHHAQNLRISSSVLNDV 362



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV DIPG TRD +    +       I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDIPGVTRDRIYATGEWLTRKFNIIDTGGIELSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    E   +  + +  AD+I+ +
Sbjct: 66  EPFMTEIRAQAEIAMTEADVIIAV 89


>gi|157828030|ref|YP_001494272.1| GTP-binding protein Era [Rickettsia rickettsii str. 'Sheila Smith']
 gi|157800511|gb|ABV75764.1| GTP-binding protein Era [Rickettsia rickettsii str. 'Sheila Smith']
          Length = 339

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 20/159 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E  
Sbjct: 55  VCIIGQPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114

Query: 282 DIVEKEGIKRTFLEVENADLILL-LKEINSKKEISF-------PKNIDFIFIGTKSDLYS 333
             +EK  ++  +  + +ADL+LL +  + S  +I+          NI  IF+  K D+ S
Sbjct: 115 GSLEKVMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIIPIFLLNKIDIES 174

Query: 334 TY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360
            Y        TE Y D L   IS+ +G+ ++ L+  I S
Sbjct: 175 KYLNDIKAFLTENYPDSLLLPISALSGKNIDGLLEYITS 213


>gi|332299922|ref|YP_004441843.1| small GTP-binding protein [Porphyromonas asaccharolytica DSM 20707]
 gi|332176985|gb|AEE12675.1| small GTP-binding protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 399

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 23/170 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
           +++++G  N+GKS+LFN L +++ ++V+D  GTT D +    +L     + + DT G+ +
Sbjct: 13  RLLLVGQVNSGKSTLFNRLLRQERSLVSDQAGTTTDSVEKLFELPSVGPILLVDTPGLAD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSDL- 331
            D  +  E  + T L + +ADL+L L  ++ +  +  P        N+  + I  ++DL 
Sbjct: 73  -DTPLGAERQRVTQLALSSADLVLYL--LSCEDSLDTPIIAALRKANVPTLPIIARADLP 129

Query: 332 -YSTYTEEYDHLISSF----------TGEGLEELINKIKSILSNKFKKLP 370
             S++ E  + ++  F            E L+ L+ KIK  L N  +  P
Sbjct: 130 EQSSWLERQEEIVQCFGHAPLSLRQNDDESLDTLLEKIKQTLHNVSEPTP 179


>gi|296446239|ref|ZP_06888186.1| ribosome-associated GTPase EngA [Methylosinus trichosporium OB3b]
 gi|296256276|gb|EFH03356.1| ribosome-associated GTPase EngA [Methylosinus trichosporium OB3b]
          Length = 468

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L      I DTAG+ E
Sbjct: 6   FTLAIIGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGEARLADLRFTIIDTAGLEE 65

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
                +E     +T   +E+AD IL +
Sbjct: 66  GASATLEGRMRAQTEAAIESADAILFM 92



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  NAGKS+L N L  +D  +     G TRD + ++       +K+ DTAG+R+ 
Sbjct: 201 RIAVVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIGVEFRWRDREMKLFDTAGLRKR 260

Query: 281 DDIVEK 286
             +V+K
Sbjct: 261 ARVVDK 266


>gi|295105866|emb|CBL03409.1| GTP-binding protein HflX [Gordonibacter pamelaeae 7-10-1-b]
          Length = 428

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 21/186 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +K+ + G++NAGKSSL N L   DV +  D    T D  T   +L EG  + ++DT G  
Sbjct: 206 FKVALAGYTNAGKSSLLNRLTNADV-LAYDKLFATLDSTTRKFELPEGREITVTDTVGFI 264

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNI-------DF--IFIG 326
           +       E  K T  E+  ADL+L + + +S   + +I+  +++       D   + + 
Sbjct: 265 QKLPTTLIEAFKSTLDEITGADLVLHVVDASSDEYEAQIAAVEDVLGQIEAQDLLRVLVF 324

Query: 327 TKSDLYS-------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL                  +S+ TGEG+ EL+  +  + S + + L   IP ++  
Sbjct: 325 NKCDLLDGEQCGALKARHPQAQFVSAATGEGIAELVGHVARVASAQDEHLDVVIPYNRGD 384

Query: 380 LYHLSQ 385
           L  ++ 
Sbjct: 385 LVSVAH 390


>gi|269978226|ref|ZP_06185176.1| ribosome-associated GTPase EngA [Mobiluncus mulieris 28-1]
 gi|269933735|gb|EEZ90319.1| ribosome-associated GTPase EngA [Mobiluncus mulieris 28-1]
          Length = 547

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N+LA    ++V+D PGTTRD +   L+L+G      DTAGI+
Sbjct: 288 RVALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVDEVLELDGKEWVFVDTAGIK 345



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + VA+V D PG TRD +  D D  G    + DT G     
Sbjct: 114 VAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVGV 173

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
             ++K    +  + +E AD+ L + + N
Sbjct: 174 KGLDKAVATQAEIAIEMADVSLFVVDAN 201


>gi|322420694|ref|YP_004199917.1| GTP-binding protein Era [Geobacter sp. M18]
 gi|320127081|gb|ADW14641.1| GTP-binding protein Era [Geobacter sp. M18]
          Length = 297

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +I R+G+ + I+G  N GKS+L N +  + + I +D P TTR+ +    ++ G  +   D
Sbjct: 4   KIFRSGF-VSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNQIKGIHNVPGGQIVFLD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFI 325
           T GI      + K  ++     V+  DLIL L        KE    KE+    +   I +
Sbjct: 63  TPGIHRAKTRLNKFMVEEALSSVQGVDLILFLVDGAFDPEKEAEMIKEVLSGVDAPVILV 122

Query: 326 GTKSDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL          + Y E Y       +S+ TG+G+++L+  +  +L       P  
Sbjct: 123 LNKIDLIPKGELLGRMAIYGETYPFKEIIPVSASTGDGVDQLVQLVHGLLPEGPCYFPDD 182

Query: 373 IPSHKRHLYHLSQTVR 388
           I +     + +++ +R
Sbjct: 183 ILTDVPERFIVAEIIR 198


>gi|153840641|ref|ZP_01993308.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810]
 gi|149745697|gb|EDM56827.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810]
          Length = 109

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           + ++G  N GKS+LFN L +   A+V D PG TRD       LD E   + I DT GI  
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVI-DTGGIDG 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           T++ VE +  +++   ++ AD++L L
Sbjct: 64  TEEGVETKMAEQSLAAIDEADVVLFL 89


>gi|119025833|ref|YP_909678.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765417|dbj|BAF39596.1| GTP-binding protein engA [Bifidobacterium adolescentis ATCC 15703]
          Length = 675

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 21/185 (11%)

Query: 217 RNGYKIV----ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           +NG K V    ++G  N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ 
Sbjct: 232 KNGPKPVGVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWCGTDFKLV 291

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILL-------LKEINSK--KEISFPKNIDFI 323
           DT G     + +E     +  + V+ AD ++L       L + + +  K +        +
Sbjct: 292 DTGGWETDVEGIESAIASQAQIAVQLADAVILVVDGLVGLTDTDERIVKMLRAAGKPVTL 351

Query: 324 FIGTKSDLYSTY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            +    D  S Y T E+  +       IS+  G G+ EL++     L    +   F  PS
Sbjct: 352 AVNKVDDRESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALDSLKKAERTSGFLTPS 411

Query: 376 HKRHL 380
           H R +
Sbjct: 412 HLRRV 416



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 31/179 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGI- 277
           ++ ++G  N GKSSL N LA ++  +V D+ GTTRD +   + +D E +L    DTAGI 
Sbjct: 415 RVALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWL--FIDTAGIK 472

Query: 278 RETDDIVEKEGIK--RTFLEVENADLILLL----KEINSKKEISFPKNID----FIFIGT 327
           R    +   E     RT   +E ++L L+L    + I+ +      + +D     + +  
Sbjct: 473 RRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRCIVLVFN 532

Query: 328 KSDLYST---------YTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           K DL            +  E++ +       +S+ TG     L N ++  L++  K++P
Sbjct: 533 KWDLMDEFDRQRMERLWKTEFNRVTWAQRVNLSAKTGWHTNRLANAMRGALASWDKRIP 591


>gi|227875339|ref|ZP_03993481.1| GTP-binding protein EngA [Mobiluncus mulieris ATCC 35243]
 gi|227844244|gb|EEJ54411.1| GTP-binding protein EngA [Mobiluncus mulieris ATCC 35243]
          Length = 517

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N+LA    ++V+D PGTTRD +   L+L+G      DTAGI+
Sbjct: 258 RVALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVDEVLELDGKEWVFVDTAGIK 315



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + VA+V D PG TRD +  D D  G    + DT G     
Sbjct: 84  VAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVGV 143

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
             ++K    +  + +E AD+ L + + N
Sbjct: 144 KGLDKAVATQAEIAIEMADVSLFVVDAN 171


>gi|291000700|ref|XP_002682917.1| small GTPase [Naegleria gruberi]
 gi|284096545|gb|EFC50173.1| small GTPase [Naegleria gruberi]
          Length = 644

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 6/94 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL--DLEGYLVKISDTA 275
           N  ++ I+G SN GKS+L N L  ++    +  PGTTRD + ++   +  G    I DTA
Sbjct: 367 NIMRLAIIGRSNVGKSTLLNHLIGEERTRTSSTPGTTRDTIEVEAINEKTGQHYLICDTA 426

Query: 276 GIRE---TD-DIVEKEGIKRTFLEVENADLILLL 305
           GIR+   TD D +E+  +K T+  ++ A++  L+
Sbjct: 427 GIRKKKHTDTDRIEQMSLKDTYRTIKYANVCCLV 460



 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 4/61 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRN--GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           F  N  SS+   GK+ +++R+    ++ I+G  N GKS+LFN+L  +  +IV + PG TR
Sbjct: 15  FDDNSTSSYA--GKVLKMVRSKKNLRVAIIGRENVGKSTLFNSLLGRQHSIVHNSPGVTR 72

Query: 256 D 256
           D
Sbjct: 73  D 73


>gi|116515098|ref|YP_802727.1| hypothetical protein BCc_162 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285506|sp|Q057R5|ERA_BUCCC RecName: Full=GTPase Era
 gi|116256952|gb|ABJ90634.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 297

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI+I+G +N GKS+L N L K +++I++  P TT+  +      + +  +I D+ G+++ 
Sbjct: 9   KIIIVGRTNVGKSTLLNKLIKSNISIISRKPNTTQKHIIGIYTYKLFQFEIFDSPGLQDK 68

Query: 281 -DDIVEKEGIKRTFLEVENADLILLL 305
             +I+EK+ I+ TF  +  +D+I+ L
Sbjct: 69  YHNIIEKKKIRDTFNLINESDIIIFL 94


>gi|21220251|ref|NP_626030.1| GTP-binding protein EngA [Streptomyces coelicolor A3(2)]
 gi|256788632|ref|ZP_05527063.1| GTP-binding protein EngA [Streptomyces lividans TK24]
 gi|289772527|ref|ZP_06531905.1| ribosome-associated GTPase EngA [Streptomyces lividans TK24]
 gi|10799853|emb|CAC12931.1| putative GTP binding protein [Streptomyces coelicolor A3(2)]
 gi|289702726|gb|EFD70155.1| ribosome-associated GTPase EngA [Streptomyces lividans TK24]
          Length = 492

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            G  +    +I ++G  N GKSSL N +A +D  +V ++ GTTRD +   ++L G   K 
Sbjct: 221 FGTAVGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELIELGGVTWKF 280

Query: 272 SDTAGIRE 279
            DTAGIR+
Sbjct: 281 VDTAGIRK 288



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G  +  
Sbjct: 56  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 115

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     +    +E AD ++ +
Sbjct: 116 LGIDASVAAQAEYAIEAADAVVFV 139


>gi|294677824|ref|YP_003578439.1| GTP-binding protein EngA [Rhodobacter capsulatus SB 1003]
 gi|294476644|gb|ADE86032.1| GTP-binding protein EngA [Rhodobacter capsulatus SB 1003]
          Length = 499

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   D  L      + D+AG+  
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDLREGDARLGDLRFVVIDSAGLEL 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
             DD ++    + T   VE AD+ L L
Sbjct: 63  AEDDSLQGRMRRLTERAVEEADVCLFL 89



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 29/167 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++     G  ++I DTAG+R+ 
Sbjct: 201 QLAVIGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISVTKTFMGTPMRIWDTAGMRKK 260

Query: 280 --TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF--------IFIGTKS 329
               D +EK  +      V  A+++++L ++N   E+   +  DF        +    K 
Sbjct: 261 ARVSDKLEKLSVADGLRAVRFAEVVVVLLDVNIPFEVQDLRIADFAETEGRAVVVAANKW 320

Query: 330 DLYSTYT-------EEYDHL-----------ISSFTGEGLEELINKI 358
           DL    T       E ++ L           +S+ TG+GL+ L N I
Sbjct: 321 DLEEEKTEKLKELRENFERLLPQLRGAPLVTVSAKTGKGLDRLHNAI 367


>gi|258511668|ref|YP_003185102.1| ribosome-associated GTPase EngA [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478394|gb|ACV58713.1| ribosome-associated GTPase EngA [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 444

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G +N GKS+LFN L  + V+IV D PG TRD +    +  G   ++ DT GI E D
Sbjct: 6   VAIVGRANVGKSTLFNRLVGRRVSIVEDTPGVTRDRIYGKSEWNGVPFRVIDTGGI-EMD 64

Query: 282 DIVEKEGIKR--TFLEVENADLILLL 305
           +  E   + R    + ++ AD+IL +
Sbjct: 65  EEDEMGNLIRVQAQIAIDEADVILFV 90



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  +I  +G  N GKSSL N L  ++  +V+ + GTTRD +   L+ +G    + DTAG+
Sbjct: 175 DAIRIAFIGRPNVGKSSLVNRLLGEERVMVSPVAGTTRDAVDTPLERDGQTYMLVDTAGM 234

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R    +   +EK  + R    ++ AD+  ++
Sbjct: 235 RRKGKVYERIEKYSVLRALRALDRADVAFVV 265


>gi|319892465|ref|YP_004149340.1| GTP-binding protein EngA [Staphylococcus pseudintermedius HKU10-03]
 gi|317162161|gb|ADV05704.1| GTP-binding protein EngA [Staphylococcus pseudintermedius HKU10-03]
 gi|323464432|gb|ADX76585.1| GTP-binding protein EngA [Staphylococcus pseudintermedius ED99]
          Length = 436

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL NA+  ++  IV++I GTTRD +      EG    + DTAG+R+ 
Sbjct: 177 RLSLIGRPNVGKSSLINAILGEERVIVSNIAGTTRDAIDTVYSYEGQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNVIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + ++ AD+I+ +
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFM 89


>gi|167041437|gb|ABZ06189.1| putative GTPase of unknown function [uncultured marine
           microorganism HF4000_006O13]
          Length = 332

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 37/223 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R+GY + ++G  N GKS+L NAL  + V+IVT  P TT+ ++L I + L    + + DT 
Sbjct: 52  RSGY-VAVIGRPNVGKSTLVNALVGEKVSIVTSKPQTTQINILGI-VHLPHAQIMLVDTP 109

Query: 276 GIR--ETDDIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFPK------NIDFIFIG 326
           G+       +  K+  K T   +  ADL +++ E+N  KKE  +        N + I   
Sbjct: 110 GLLSGRGKRLSSKQTRKETRNALAMADLAVVVVEVNRWKKEDDYLMERLGEFNFEKILAV 169

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEEL----------INKIKSILSNKFKKLPFSIP-- 374
            K DL+   ++  D L  S T    +E+          I +++S++      LPF  P  
Sbjct: 170 NKIDLFKDKSQILDFLAQSSTKGSFKEIVPISALRDKNITRLRSLME---ANLPFQTPQF 226

Query: 375 -----SHKRHLYHLSQTVRYLEMASLNEK-----DCGLDIIAE 407
                + K  ++ +S+ VR   M  L ++      C +D + E
Sbjct: 227 SKTTVTDKSTVFRISEIVREKLMKCLRDELPYSLTCEVDHMEE 269


>gi|311064384|ref|YP_003971109.1| GTP-binding protein [Bifidobacterium bifidum PRL2010]
 gi|310866703|gb|ADP36072.1| GTP-binding protein [Bifidobacterium bifidum PRL2010]
          Length = 711

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA +  A+V D+ GTTRD +  TID+D E +L    DTAGI+
Sbjct: 451 RVALVGRPNVGKSSLLNQLAGEQRAVVNDLAGTTRDPVDETIDIDGEDWL--FIDTAGIK 508



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 17/176 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 277 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWSGTEFKLVDTGGWEADV 336

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK--KEISFPKNIDFIFIGTKSDLY 332
           + +E     +  + V+ +D ++L       L + + +  K +        + +    D  
Sbjct: 337 EGIESAIASQAQIAVQLSDAVILVVDGHVGLTDTDERIVKMLRASGKPVTLAVNKVDDGA 396

Query: 333 STY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           S Y T E+  L       IS+  G G+ +L++     L    K   F  P+H R +
Sbjct: 397 SEYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALDSLRKADKTSGFLTPTHLRRV 452


>gi|310287469|ref|YP_003938727.1| GTP-binding protein [Bifidobacterium bifidum S17]
 gi|309251405|gb|ADO53153.1| GTP-binding protein [Bifidobacterium bifidum S17]
          Length = 711

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA +  A+V D+ GTTRD +  TID+D E +L    DTAGI+
Sbjct: 451 RVALVGRPNVGKSSLLNQLAGEQRAVVNDLAGTTRDPVDETIDIDGEDWL--FIDTAGIK 508



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 17/176 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 277 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWSGTEFKLVDTGGWEADV 336

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK--KEISFPKNIDFIFIGTKSDLY 332
           + +E     +  + V+ +D ++L       L + + +  K +        + +    D  
Sbjct: 337 EGIESAIASQAQIAVQLSDAVILVVDGHVGLTDTDERIVKMLRASGKPVTLAVNKVDDGA 396

Query: 333 STY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           S Y T E+  L       IS+  G G+ +L++     L    K   F  P+H R +
Sbjct: 397 SEYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALDSLRKADKTSGFLTPTHLRRV 452


>gi|239947026|ref|ZP_04698779.1| ribosome-associated GTPase EngA [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921302|gb|EER21326.1| ribosome-associated GTPase EngA [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 447

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    +  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSTRKKAIVHDLPGVTRDRKYTEGKIGSFEFLLIDTPGLEENP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D + ++ +++T   +  ADLI  +
Sbjct: 66  DSMGEKLMEQTTKAILEADLICFM 89



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K+ DTAG+R+ 
Sbjct: 181 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240

Query: 281 DDIVE 285
             I E
Sbjct: 241 STITE 245


>gi|298387441|ref|ZP_06996993.1| GTP-binding protein [Bacteroides sp. 1_1_14]
 gi|298259648|gb|EFI02520.1| GTP-binding protein [Bacteroides sp. 1_1_14]
          Length = 405

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V+D PGTT D +   +++ G       DT G
Sbjct: 10  NRLHIALFGKRNSGKSSLINALTGQDTALVSDTPGTTTDPVQKAMEIHGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
             +  ++  +  I+ T+  VE  D+ LLL
Sbjct: 70  FDDEGELGNRR-IECTWKAVEKTDIALLL 97


>gi|269127039|ref|YP_003300409.1| small GTP-binding protein [Thermomonospora curvata DSM 43183]
 gi|268311997|gb|ACY98371.1| small GTP-binding protein [Thermomonospora curvata DSM 43183]
          Length = 463

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 12/86 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  N GKSSL N LA ++  +V D+ GTTRD +   ++L G   +  DTAGIR  
Sbjct: 201 RVALLGRPNVGKSSLLNKLAGENRVVVDDVAGTTRDPVDELIELGGRTWRFIDTAGIR-- 258

Query: 281 DDIVEKEGIKRTFLEVENADLILLLK 306
                     R + E + AD    L+
Sbjct: 259 ----------RRYRESQGADFYATLR 274



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ + D  G  + I DT G     
Sbjct: 27  VAVVGRPNVGKSTLVNRVLGRREAVVEDVPGVTRDRVSYEADWSGRRLTIVDTGGWLPDA 86

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++  L VE AD++L +
Sbjct: 87  TGLAAAVAEQARLAVELADVVLFV 110


>gi|224283101|ref|ZP_03646423.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313140250|ref|ZP_07802443.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132760|gb|EFR50377.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 711

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA +  A+V D+ GTTRD +  TID+D E +L    DTAGI+
Sbjct: 451 RVALVGRPNVGKSSLLNQLAGEQRAVVNDLAGTTRDPVDETIDIDGEDWL--FIDTAGIK 508



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 17/176 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 277 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWSGTEFKLVDTGGWEADV 336

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK--KEISFPKNIDFIFIGTKSDLY 332
           + +E     +  + V+ +D ++L       L + + +  K +        + +    D  
Sbjct: 337 EGIESAIASQAQIAVQLSDAVILVVDGHVGLTDTDERIVKMLRASGKPVTLAVNKVDDGA 396

Query: 333 STY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           S Y T E+  L       IS+  G G+ +L++     L    K   F  P+H R +
Sbjct: 397 SEYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALDSLRKADKTSGFLTPTHLRRV 452


>gi|256392245|ref|YP_003113809.1| small GTP-binding protein [Catenulispora acidiphila DSM 44928]
 gi|256358471|gb|ACU71968.1| small GTP-binding protein [Catenulispora acidiphila DSM 44928]
          Length = 493

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           + GE++    ++ ++G  N GKSSL N LA ++  +V    GTTRD +   +DL G   +
Sbjct: 221 RFGELMGGPRRVALVGKPNVGKSSLLNKLAGEERVVVDATAGTTRDPVDELIDLGGKTWR 280

Query: 271 ISDTAGIR 278
             DTAGIR
Sbjct: 281 FVDTAGIR 288



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D    G    + DT G
Sbjct: 57  LAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDAHWNGRRFSLVDTGG 111


>gi|26006737|sp|Q9EWW8|DER_STRCO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
          Length = 465

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            G  +    +I ++G  N GKSSL N +A +D  +V ++ GTTRD +   ++L G   K 
Sbjct: 194 FGTAVGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELIELGGVTWKF 253

Query: 272 SDTAGIRE 279
            DTAGIR+
Sbjct: 254 VDTAGIRK 261



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G
Sbjct: 29  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGG 83


>gi|297571444|ref|YP_003697218.1| ribosome-associated GTPase EngA [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931791|gb|ADH92599.1| ribosome-associated GTPase EngA [Arcanobacterium haemolyticum DSM
           20595]
          Length = 504

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+L N +  + VA+V D PG TRD +  D +  G    I DT G     
Sbjct: 69  LAILGRPNVGKSTLVNRIVGQRVAVVQDTPGVTRDRVKYDAEWAGVDFTIMDTGGWEAVV 128

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++K     +   +  AD+++L+
Sbjct: 129 EGIDKSVSDSSEQAINEADVVMLV 152



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA  +  +V ++ GTTRD +   ++L+G      DTAG+R  
Sbjct: 243 RVALVGRPNVGKSSLLNQLAGSNRVVVNELAGTTRDPVDEVIELDGQPWTFVDTAGVRRR 302

Query: 281 DDIVEKE---GIKRTFLEVENADLILLL 305
             + +        RT   +E A+L L+L
Sbjct: 303 VHLTKGADYYATLRTQSAIEKAELGLVL 330


>gi|313200697|ref|YP_004039355.1| ferrous iron transport protein b [Methylovorus sp. MP688]
 gi|312440013|gb|ADQ84119.1| ferrous iron transport protein B [Methylovorus sp. MP688]
          Length = 594

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I +LG  N GKS+ FN ++    A V + PG T D++   L L G++V+I D  GI + 
Sbjct: 3   RIALLGMPNTGKSTFFNRVSGAS-ARVGNWPGITVDLMAAKLLLGGHIVEIIDLPGIYDL 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
               + E + R FLE  + DL +++
Sbjct: 62  HGFSDDESVVRHFLENNDVDLAVIV 86


>gi|332666380|ref|YP_004449168.1| GTP-binding protein Era-like-protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332335194|gb|AEE52295.1| GTP-binding protein Era-like-protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 298

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 14/99 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I I+GH N GKS+L NAL  + ++I+T+ P TTR  +   L  E + + +SDT G
Sbjct: 3   RSGF-INIIGHPNVGKSTLMNALVGERMSIITNKPQTTRHRIIGILSGEDFQMVLSDTPG 61

Query: 277 IRETDDIVEKEGIK-----RTFLE--VENADLILLLKEI 308
                 +V+K   K      +F++   E+ADL+LL+ ++
Sbjct: 62  ------VVDKPAYKMHQAMNSFVQSTFEDADLMLLVTDV 94


>gi|270291293|ref|ZP_06197515.1| ribosome-associated GTPase EngA [Pediococcus acidilactici 7_4]
 gi|304385042|ref|ZP_07367388.1| ribosome-associated GTPase EngA [Pediococcus acidilactici DSM
           20284]
 gi|270280139|gb|EFA25975.1| ribosome-associated GTPase EngA [Pediococcus acidilactici 7_4]
 gi|304329236|gb|EFL96456.1| ribosome-associated GTPase EngA [Pediococcus acidilactici DSM
           20284]
          Length = 435

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  +   IV+DI GTTRD +       G    + DTAG+R+   I
Sbjct: 179 LIGRPNVGKSSLVNAILGEQRVIVSDIAGTTRDAIDTRFTSNGDEFVMVDTAGMRKKGKI 238

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E+  + R    ++N++++L++
Sbjct: 239 YENTERYSVMRAMKAIDNSNVVLVV 263



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI+  +
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTHSEWLGRKFNLIDTGGIQIGE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   +E   +  L +  AD+I+ +
Sbjct: 66  EPFLEEIRDQAELAINEADVIIFI 89


>gi|253998623|ref|YP_003050686.1| ferrous iron transport protein B [Methylovorus sp. SIP3-4]
 gi|253985302|gb|ACT50159.1| ferrous iron transport protein B [Methylovorus sp. SIP3-4]
          Length = 594

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I +LG  N GKS+ FN ++    A V + PG T D++   L L G++V+I D  GI + 
Sbjct: 3   RIALLGMPNTGKSTFFNRVSGAS-ARVGNWPGITVDLMAAKLLLGGHIVEIIDLPGIYDL 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
               + E + R FLE  + DL +++
Sbjct: 62  HGFSDDESVVRHFLENNDVDLAVIV 86


>gi|290961544|ref|YP_003492726.1| GTPase [Streptomyces scabiei 87.22]
 gi|260651070|emb|CBG74191.1| putative GTPase [Streptomyces scabiei 87.22]
          Length = 488

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            G  +    +I ++G  N GKSSL N +A ++  +V +I GTTRD +   ++L G   K 
Sbjct: 216 FGTAVGGPRRIALIGRPNVGKSSLLNKVANEERVVVNEIAGTTRDPVDELIELGGVTWKF 275

Query: 272 SDTAGIRE 279
            DTAGIR+
Sbjct: 276 VDTAGIRK 283



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G
Sbjct: 51  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGG 105


>gi|148265040|ref|YP_001231746.1| ferrous iron transport protein B [Geobacter uraniireducens Rf4]
 gi|146398540|gb|ABQ27173.1| ferrous iron transport protein B [Geobacter uraniireducens Rf4]
          Length = 662

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 4/104 (3%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           K   S H  Q    E   +G K+V++G+ N GKS LFNAL    V  V++ PGT+ +V  
Sbjct: 5   KKKASCHSVQA---EPQSSGKKVVLVGNPNVGKSVLFNALTGSYVT-VSNYPGTSVEVAR 60

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               + G   +I DT G+     I E+E + R  L  E+ D++L
Sbjct: 61  GSASIAGGQYQIIDTPGMYSLLPITEEERVAREILLNESPDVVL 104


>gi|67458640|ref|YP_246264.1| GTP-binding protein EngA [Rickettsia felis URRWXCal2]
 gi|75536894|sp|Q4UMV9|DER_RICFE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|67004173|gb|AAY61099.1| Conserved GTP-binding protein [Rickettsia felis URRWXCal2]
          Length = 447

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    +  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTEGKIGSFEFLLIDTPGLEENP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D + +  I++T   +  ADLI  +
Sbjct: 66  DSMGERLIEQTTKAILEADLICFM 89



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I R+  +IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K+ DT
Sbjct: 175 IKRDCLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDT 234

Query: 275 AGIRETDDIVE 285
           AG+R+   I E
Sbjct: 235 AGLRKKSTITE 245


>gi|326440452|ref|ZP_08215186.1| GTP-binding protein Der [Streptomyces clavuligerus ATCC 27064]
          Length = 482

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            G  +    +I ++G  N GKSSL N +A+++  +V ++ GTTRD +   ++L G   K 
Sbjct: 212 FGTAVGGPRRIALIGRPNVGKSSLLNKVAREERVVVNELAGTTRDPVDELIELGGVTWKF 271

Query: 272 SDTAGIR 278
            DTAGIR
Sbjct: 272 VDTAGIR 278



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G
Sbjct: 47  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGG 101


>gi|188524409|ref|ZP_03004430.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198273778|ref|ZP_03206312.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|195660088|gb|EDX53468.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198249533|gb|EDY74315.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
          Length = 442

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K  I+G  N GKSSL N +  +   IV    G+TRD +  D         I DTAG+R 
Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRMIVNPEAGSTRDSIDNDFSYHNKKYTIIDTAGVRR 234

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              I   VEK  + RT   +E + LILL+
Sbjct: 235 KGKIVEAVEKYAVLRTQKAIERSQLILLV 263



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK---ISDTAGIR 278
           I I+G  N GKSSLFN +  +  +IV D PG TRD +    D+  +L +   + DT GI 
Sbjct: 4   IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRI---YDVGNWLTRDFMLIDTGGII 60

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
            ++D  +    ++    +  A+ I+ L
Sbjct: 61  SSEDTYQDNINEQVLFAINEANTIIFL 87


>gi|126659601|ref|ZP_01730732.1| ferrous iron transport protein B [Cyanothece sp. CCY0110]
 gi|126619144|gb|EAZ89882.1| ferrous iron transport protein B [Cyanothece sp. CCY0110]
          Length = 668

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 8/168 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKS+LFN +     A V + PG T D+L  +++L G  V+  D  GI + 
Sbjct: 20  RVSVMGMPNVGKSTLFNQITGAS-AFVGNWPGVTVDLLEAEVELNGKTVEFVDLPGIYDL 78

Query: 281 DDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +   E E + + F E    +L+L +L      ++I     +    +G    L     +E 
Sbjct: 79  EGYSEDERVVQGFFERFPINLVLVVLNAGQIDRQIRLALQVK--ALGIPGMLILNMADEA 136

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH-LSQT 386
           +H       E LEE +     ++S K+ +    I   K  + H LSQ+
Sbjct: 137 EHFNIKINAEKLEEKLGMPVVLVSAKYNR---GIIQAKHRISHVLSQS 181


>gi|145489801|ref|XP_001430902.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398003|emb|CAK63504.1| unnamed protein product [Paramecium tetraurelia]
          Length = 607

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 4/109 (3%)

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           R F +A+      ED  +   + + N I + K+ I       K    +RN   + I+G  
Sbjct: 252 REFDQAN---PNPEDNSDLDDENIANPI-YTKSPIQEKQGVSKENLQLRNPIMLSIMGRQ 307

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N GKSSL N L  +D  I    PGTTRD ++     +G  +++ DTAGI
Sbjct: 308 NVGKSSLVNTLLGEDRVIADPTPGTTRDPISTFWVYKGQKIQLVDTAGI 356


>gi|256372122|ref|YP_003109946.1| small GTP-binding protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008706|gb|ACU54273.1| small GTP-binding protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 429

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 17/159 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++VI+G  N GKSSLFN +  +  A+V + P  TRD     +D EG  + I DT G    
Sbjct: 3   RVVIVGRPNVGKSSLFNRVVGRREAVVEERPKVTRDAKEATIDWEGAPLAIVDTGGYLAG 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLY 332
            D ++          +  ADL L++        +E  +   +     +  I +  K D  
Sbjct: 63  ADGLDAAVSAAVEAALRRADLALVVVDARVPPTEEDAAIARVVRRAKVPSILVANKVDSP 122

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
                 ++HL         +S+  G G+ EL++ +   L
Sbjct: 123 GHEPAIWEHLALGVGEPVPVSAMHGRGVFELLDLVARRL 161



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DD 282
           G  N GKSSLFN L  +  AIV D PGTT D L   ++ +   ++  DTAG+R     + 
Sbjct: 183 GRPNVGKSSLFNRLVGEPRAIVYDQPGTTVDTLDTVVETDEGRIRFVDTAGLRRRSRYES 242

Query: 283 IVEKEGIKRTFLEVENADLILLL 305
             E   + RT   ++ AD+ LL+
Sbjct: 243 GTEYFSMVRTLAAIDAADVSLLV 265


>gi|284031167|ref|YP_003381098.1| small GTP-binding protein [Kribbella flavida DSM 17836]
 gi|283810460|gb|ADB32299.1| small GTP-binding protein [Kribbella flavida DSM 17836]
          Length = 460

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 27/177 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N +AK+D  +V+D+ GTT D +   + L G   +  DTAGIR  
Sbjct: 200 RVAIVGKPNVGKSSLLNKVAKEDRVVVSDVSGTTVDPVDELITLAGRQWRFIDTAGIRRK 259

Query: 281 DDIV---EKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNID-----FIFIGTKS 329
              V   E     RT   +E A++++++    E  +++++     ++      +    K 
Sbjct: 260 VKNVQGHEYYASLRTNSAIERAEVVVVVIDASEPMTEQDLRIMNTVEEAGKALVIAYNKW 319

Query: 330 DLYST----YTE-EYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLP 370
           DL       Y E E D             IS+ TG  +E+L+  I++ L     ++P
Sbjct: 320 DLVDEDRRYYLEREIDRDLVQFRWAPRVNISALTGRHMEKLVPAIEAALDGWQTRVP 376



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKS+L N +  +  A+V D PG TRD ++ D D  G    + DT G
Sbjct: 27  LAIVGRPNVGKSTLVNRIIGRREAVVEDTPGVTRDRVSYDADWAGRAFTVVDTGG 81


>gi|330504675|ref|YP_004381544.1| GTP-binding protein EngA [Pseudomonas mendocina NK-01]
 gi|328918961|gb|AEB59792.1| GTP-binding protein EngA [Pseudomonas mendocina NK-01]
          Length = 492

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G K+ I+G  N GKS+L N +  ++  IV D  GTTRD + I  + +     + DTAG
Sbjct: 194 KDGIKLAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERDDEKYTLIDTAG 253

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R    I   VEK  + +T   ++++++++ +
Sbjct: 254 VRRRGKIFEAVEKFSVVKTLQAIQDSNVVVFV 285



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDAIVGDLSGLTRDRQYGEAKWQGRTYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++ +  +++   +E AD +L L
Sbjct: 65  EGIDAKMAEQSLQAIEEADAVLFL 88


>gi|184201166|ref|YP_001855373.1| GTP-binding protein EngA [Kocuria rhizophila DC2201]
 gi|183581396|dbj|BAG29867.1| GTP-binding protein EngA [Kocuria rhizophila DC2201]
          Length = 499

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 46/88 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G  +  
Sbjct: 64  VAVVGRPNVGKSTLVNRVIGRREAVVEDTPGVTRDRVSYKAEWNGKNFTLVDTGGWEQDA 123

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
             + K    +  L V+NAD +LL+ ++ 
Sbjct: 124 KGINKRVADQAELAVQNADAVLLVLDVT 151



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 34/58 (58%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA  D  +V D  GTTRD +   + L G   +  DTAGIR
Sbjct: 238 RVALIGRPNVGKSSLLNKLAGSDRVVVDDTAGTTRDPVDEIVMLGGEPWRFIDTAGIR 295


>gi|146308511|ref|YP_001188976.1| GTP-binding protein EngA [Pseudomonas mendocina ymp]
 gi|166225842|sp|A4XY28|DER_PSEMY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145576712|gb|ABP86244.1| small GTP-binding protein [Pseudomonas mendocina ymp]
          Length = 492

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G K+ I+G  N GKS+L N +  ++  IV D  GTTRD + I  + +     + DTAG
Sbjct: 194 KDGIKLAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERDDEKYTLIDTAG 253

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +R    I   VEK  + +T   ++++++++ +
Sbjct: 254 VRRRGKIFEAVEKFSVVKTLQAIQDSNVVVFV 285



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDAIVGDLSGLTRDRQYGEAKWQGRTYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++ +  +++   +E AD +L L
Sbjct: 65  EGIDAKMAEQSLQAIEEADAVLFL 88


>gi|110679080|ref|YP_682087.1| GTP-binding protein EngA [Roseobacter denitrificans OCh 114]
 gi|123065686|sp|Q169E2|DER_ROSDO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|109455196|gb|ABG31401.1| GTP-binding protein [Roseobacter denitrificans OCh 114]
          Length = 492

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLADLRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TDD ++    + T   V+ AD+ L +
Sbjct: 63  VTDDSLQGRMRRLTERAVDMADICLFM 89



 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-----YLVKISDTA 275
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++  D  G       ++I DTA
Sbjct: 202 QVAVVGRPNAGKSTLVNQILGEDRLLTGPEAGITRDAISLRTDWVGPEGDVIPMRIFDTA 261

Query: 276 GIRETDDIVEK 286
           G+R+   + EK
Sbjct: 262 GMRKKAKVQEK 272


>gi|78223647|ref|YP_385394.1| ferrous iron transport protein B [Geobacter metallireducens GS-15]
 gi|78194902|gb|ABB32669.1| Ferrous iron transport protein B [Geobacter metallireducens GS-15]
          Length = 663

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G ++ ++G+ N GKS LFNAL    VA V++ PGT+ +V      +EG   +I DT G+
Sbjct: 20  GGKRVALVGNPNVGKSVLFNALTGAYVA-VSNYPGTSVEVSRGSTTIEGEQYEIIDTPGM 78

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL 303
                I E+E + R  L  E  D++L
Sbjct: 79  YSILPITEEERVAREILLGERPDVVL 104


>gi|116749242|ref|YP_845929.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB]
 gi|189037168|sp|A0LJ92|DER_SYNFM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|116698306|gb|ABK17494.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB]
          Length = 446

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ ILG  N GKS+L N L      IV+ +PGTTRD +   +   G    + DTAGIR  
Sbjct: 180 RVSILGRPNVGKSTLVNHLLGAPRVIVSPVPGTTRDAVDSHIVKAGQEYVLIDTAGIRRK 239

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
             T + +EK  I +    VE + +++LL
Sbjct: 240 GRTREKLEKISIIKALQSVERSHVVVLL 267



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN ++K + A+V D+PG TRD     +        I DTAG    D
Sbjct: 4   VAIVGRPNVGKSTLFNRISKDNSALVDDLPGVTRDRNYARVSWNDKPFVIIDTAGFVGQD 63

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINS 310
               +E  + +  L ++ AD++L + +  +
Sbjct: 64  TSAFEELTREQILLALDEADILLFVADAKT 93


>gi|262038068|ref|ZP_06011473.1| GTP-binding protein Era [Leptotrichia goodfellowii F0264]
 gi|261747888|gb|EEY35322.1| GTP-binding protein Era [Leptotrichia goodfellowii F0264]
          Length = 304

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 7/104 (6%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKI 271
           EI+++G+ I I+G  N GKS+L N L K+ VAIV+D  GTTRD +   +++    Y+   
Sbjct: 6   EIMKSGF-IAIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGENQYI--F 62

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            DT GI +   ++ +   +     + N DLI+ +  ++  KEIS
Sbjct: 63  VDTPGIHKPKHLLGEHMTEIALETLSNVDLIMFM--LDGTKEIS 104


>gi|222528496|ref|YP_002572378.1| small GTP-binding protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222455343|gb|ACM59605.1| small GTP-binding protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 403

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 21/162 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I I G  NAGKSSL NA+  + +AIV+D+PGTT D +   +++   G +V I DTAGI +
Sbjct: 12  IAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKSMEILPLGPVVLI-DTAGI-D 69

Query: 280 TDDIVEKEGIKRTFLEVENADL-ILLLKEINS----KKEISF--PKNIDFIFIGTKSDLY 332
            + I+ K  I++T   +   D+ IL++ +I+     K+ +     K +  I +  K D  
Sbjct: 70  DEGILGKLRIEKTLEVLNKTDIAILVVSDIDDFTYEKQLVKLFDEKKVPRIGVLNKIDKD 129

Query: 333 STYTEEYDHLISSF----------TGEGLEELINKIKSILSN 364
             Y E+   L SS           T +G++EL N +  ++ +
Sbjct: 130 PNYKEKLSFLQSSLGMPFLAVSCATLKGIDELKNALSKLVPD 171


>gi|254439207|ref|ZP_05052701.1| GTPase, putative [Octadecabacter antarcticus 307]
 gi|198254653|gb|EDY78967.1| GTPase, putative [Octadecabacter antarcticus 307]
          Length = 496

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLGDLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TD+ ++      T   VE AD+ L +
Sbjct: 63  ATDESLQGRMRALTERAVEMADVCLFM 89



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL----EGYLVKISDTAG 276
           +I ++G  NAGKS+L N +  +D  +     G TRD +++ +D         V+I DTAG
Sbjct: 200 QIAVVGRPNAGKSTLINQILGEDRLLTGPEAGITRDAISVQMDWGPESATVPVRIFDTAG 259

Query: 277 IRETDDIVEK 286
           IR+   + EK
Sbjct: 260 IRKRAKVQEK 269


>gi|163733995|ref|ZP_02141436.1| GTP-binding protein EngA [Roseobacter litoralis Och 149]
 gi|161392531|gb|EDQ16859.1| GTP-binding protein EngA [Roseobacter litoralis Och 149]
          Length = 492

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLADLRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TDD ++    + T   V+ AD+ L +
Sbjct: 63  VTDDSLQGRMRRLTERAVDMADICLFM 89



 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL---EGYLV--KISDTA 275
           ++ ++G  N+GKS+L N +  +D  +     G TRD +++ +D    EG ++  +I DTA
Sbjct: 202 QVAVVGRPNSGKSTLVNQILGEDRLLTGPEAGITRDAISLRMDWVGPEGDVIPMRIFDTA 261

Query: 276 GIRETDDIVEK 286
           G+R+   + EK
Sbjct: 262 GMRKKAKVQEK 272


>gi|288574808|ref|ZP_06393165.1| GTP-binding protein Era [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570549|gb|EFC92106.1| GTP-binding protein Era [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 309

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           GY+   + ++G  N GKSSL NAL +    IV+  P TTR+ +    D+EG  +  +DT 
Sbjct: 9   GYRSGVVAVVGRPNVGKSSLVNALLRCKATIVSPKPQTTRNRIRCIADVEGGQIVFTDTP 68

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303
           GI +    + +  +    + +++ADLIL
Sbjct: 69  GIHKPQHRLGEAIVDSALVALDDADLIL 96


>gi|20807454|ref|NP_622625.1| GTPase [Thermoanaerobacter tengcongensis MB4]
 gi|25008432|sp|Q8RB50|ERA_THETN RecName: Full=GTPase Era
 gi|20515979|gb|AAM24229.1| GTPases [Thermoanaerobacter tengcongensis MB4]
          Length = 298

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 37/219 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G +N GKS+L NA+ K+ VAI +  P TTR+ +   L  E Y +   DT G
Sbjct: 4   RAGF-VALIGRTNVGKSTLLNAILKEKVAITSPKPQTTRNTIRGILTTEDYQIIFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP-----KN 319
           I +    + +  I+     +++ DLIL + E            +++ KE+  P       
Sbjct: 63  IHKPKSKLSEFMIEVAKRTLKDVDLILYMVEPDTSIGPGDRYILDNLKEVDTPVILVVNK 122

Query: 320 IDFIFIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSIL------------S 363
           ID +      +    +  EY+      IS+  G  +E L  KI S L            +
Sbjct: 123 IDLVPAERVEEAIKVFKSEYNFKDVVAISASLGTNVEVLKEKIVSFLPEGPRYYLDDYIT 182

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVR---YLEMASLNEKD 399
           ++ +KL  +    ++ LY L + V    Y+E+ S+ E++
Sbjct: 183 DQPEKLIVAEIIREKMLYFLEEEVPHGVYVEVESIKERE 221


>gi|254393241|ref|ZP_05008394.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064]
 gi|294811807|ref|ZP_06770450.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064]
 gi|197706881|gb|EDY52693.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064]
 gi|294324406|gb|EFG06049.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064]
          Length = 490

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            G  +    +I ++G  N GKSSL N +A+++  +V ++ GTTRD +   ++L G   K 
Sbjct: 220 FGTAVGGPRRIALIGRPNVGKSSLLNKVAREERVVVNELAGTTRDPVDELIELGGVTWKF 279

Query: 272 SDTAGIR 278
            DTAGIR
Sbjct: 280 VDTAGIR 286



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G
Sbjct: 55  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGG 109


>gi|222151373|ref|YP_002560529.1| GTP-binding protein EngA [Macrococcus caseolyticus JCSC5402]
 gi|254783159|sp|B9E6L5|DER_MACCJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|222120498|dbj|BAH17833.1| GTP-binding protein EngA [Macrococcus caseolyticus JCSC5402]
          Length = 436

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G +N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRANVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIELGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +  +++   +  + +E AD+I+ +  +N +  I+
Sbjct: 66  EPFQEQIRAQAEIAIEEADVIIFM--VNGRDGIT 97



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NA+  ++  IV+ + GTTRD +      E     + DTAG+R+ 
Sbjct: 177 KFSLIGRPNVGKSSLINAILGEERVIVSPVAGTTRDAIDTVYTFENQEYVMIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E+  + R    +E ++++L++
Sbjct: 237 GKVYEATERYSVLRALKAIERSNVVLVV 264


>gi|325293656|ref|YP_004279520.1| GTP-binding protein engA [Agrobacterium sp. H13-3]
 gi|325061509|gb|ADY65200.1| GTP-binding protein engA [Agrobacterium sp. H13-3]
          Length = 476

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L      I DTAG+ +
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLRFTIIDTAGLEQ 62

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLL 305
           +  + ++     +T   ++ AD+ L +
Sbjct: 63  SGPETLQGRMWAQTEAAIDEADVTLFV 89



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R  
Sbjct: 206 RVAIIGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 265

Query: 281 DDIVEK 286
             + EK
Sbjct: 266 ARVTEK 271


>gi|323489679|ref|ZP_08094906.1| GTP-binding protein Der [Planococcus donghaensis MPA1U2]
 gi|323396810|gb|EGA89629.1| GTP-binding protein Der [Planococcus donghaensis MPA1U2]
          Length = 436

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L ++++ +  Q    E   N  K  ++G  N GKSSL N+   ++  IV+++ GTTRD +
Sbjct: 155 LLDEVAKNFPQDDDEEYPDNVIKFSLIGRPNVGKSSLVNSFLGEERVIVSEVAGTTRDAI 214

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
               +       I DTAG+R+   +    EK  + R    +E +D++L++
Sbjct: 215 DTQYEYNEQPYVIIDTAGMRKKGKVYETTEKYSVLRALRAIERSDVVLVV 264



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV DIPG TRD +    D   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRVVGERVSIVEDIPGVTRDRIYSSADWLTHEFNIIDTGGIDLRD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++  ++  + ++ AD+I+ L
Sbjct: 66  EPFLEQIRQQAEIAMDEADVIIFL 89


>gi|171920931|ref|ZP_02932078.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|225550855|ref|ZP_03771804.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|171903162|gb|EDT49451.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|225380009|gb|EEH02371.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 442

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K  I+G  N GKSSL N +  +   IV    G+TRD +  D         I DTAG+R 
Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRMIVNPEAGSTRDSIDNDFSYHNKKYTIIDTAGVRR 234

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              I   VEK  + RT   +E + LILL+
Sbjct: 235 KGKIVEAVEKYAVLRTQKAIERSQLILLV 263



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK---ISDTAGIR 278
           I I+G  N GKSSLFN +  +  +IV D PG TRD +    D+  +L +   + DT GI 
Sbjct: 4   IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRI---YDVGNWLTRDFMLIDTGGII 60

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
            ++D  +    ++    +  A+ I+ L
Sbjct: 61  SSEDTYQDNINEQVLFAINEANTIIFL 87


>gi|4220418|gb|AAD12512.1| Homology to initiation factor DnaA X62539 [Mycoplasma genitalium]
          Length = 91

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 8  IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRYFFGLDGRILDKG 64
          IFA++T    SA+ IIR SGP  +++   I  KK    RK       +    + + +D  
Sbjct: 10 IFALATAPFNSALHIIRFSGPDVYEILNKITNKK--ITRKGMQIQRTWIVDENNKRIDDV 67

Query: 65 LLIVFPSPESFTGEDSAEFHVHGG 88
          LL  F SP S+TGED  E   HG 
Sbjct: 68 LLFKFVSPNSYTGEDLIEISCHGN 91


>gi|332663276|ref|YP_004446064.1| GTP-binding protein engA [Haliscomenobacter hydrossis DSM 1100]
 gi|332332090|gb|AEE49191.1| GTP-binding protein engA [Haliscomenobacter hydrossis DSM 1100]
          Length = 434

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 9/91 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR---DVLTIDLDLEGYLVKISDTAGI 277
           +  I+G  N GKSSL NAL  +D  IVT+I GTTR   D L    D E  LV   DTAGI
Sbjct: 176 RFAIVGQPNVGKSSLTNALLGEDRNIVTEIAGTTRDSIDALYTKFDKEFILV---DTAGI 232

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R+   +   +E   + R    +E+ D+ +L+
Sbjct: 233 RKKAKVHENLEFYSVLRAIKAIEDCDVCILM 263



 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L  +  +IV +I G TRD         G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRLIGERQSIVDNISGVTRDRQYGASYWNGKNFTVVDTGGFVPHS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD+ E    ++  + V+ A +I+ L ++ +
Sbjct: 65  DDVFEAAIREQVKIAVDEASVIIFLVDVTT 94


>gi|317124960|ref|YP_004099072.1| ribosome-associated GTPase EngA [Intrasporangium calvum DSM 43043]
 gi|315589048|gb|ADU48345.1| ribosome-associated GTPase EngA [Intrasporangium calvum DSM 43043]
          Length = 494

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S + L+ +L +   +S+H +  + G       ++ ++G  N GKSSL N LA  +  +V 
Sbjct: 208 SGDALDAVLEVLPQVSAHGAYAQGGP-----RRVALVGRPNVGKSSLLNKLAGSERVVVD 262

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            + GTTRD +   ++L G   +  DTAGIR
Sbjct: 263 SVAGTTRDPVDELIELAGTTWRFVDTAGIR 292



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKSSL N + ++  A+V D+PG TRD ++ + +  G    + DT G
Sbjct: 62  VAVIGRPNVGKSSLVNRILRRREAVVEDVPGVTRDRVSYEGEWAGRRFTVVDTGG 116


>gi|299821633|ref|ZP_07053521.1| ribosome-associated GTPase EngA [Listeria grayi DSM 20601]
 gi|299817298|gb|EFI84534.1| ribosome-associated GTPase EngA [Listeria grayi DSM 20601]
          Length = 447

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSS+ NAL  ++  IV+DI GTTRD +      +     + DTAG+R+ 
Sbjct: 188 KFSLIGRPNVGKSSILNALLGEERVIVSDIAGTTRDAIDTSYIYDDQEYIMIDTAGMRKR 247

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E +D++L++
Sbjct: 248 GKVYEGTEKYSVLRAMRAIERSDVVLVV 275



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 17  VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYNSAEWLGKDFNIIDTGGIDLSD 76

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + ++ AD+I+ +
Sbjct: 77  EPFLDQIRAQAEIAIDEADVIIFI 100


>gi|242278811|ref|YP_002990940.1| small GTP-binding protein [Desulfovibrio salexigens DSM 2638]
 gi|242121705|gb|ACS79401.1| small GTP-binding protein [Desulfovibrio salexigens DSM 2638]
          Length = 400

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 26/170 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I ++G  NAGKSSL NA++ +DVAIV+D PGTT D +    +L     V   DTAG+ ++
Sbjct: 13  ITLVGKRNAGKSSLINAISGQDVAIVSDQPGTTTDPVAKHYELLPLGPVTFYDTAGLDDS 72

Query: 281 DDIVEKEGIKRTFLEVENADLILL-----------LKEINSKKEISFPKNIDFIFIGTKS 329
            ++ E   IK T   +   DL L+           +K I+   E+  P  + F     K+
Sbjct: 73  GEVGELR-IKATNKVMMRTDLALVVIGEDGLTDYEMKLIDKVSELEIPYLVAF----NKN 127

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           DL      + D+           S   G  +++L   I ++   + K+ P
Sbjct: 128 DLCEPLESDMDYCRQRGIPFYKTSVLEGCSIDKLKEAIITLAPEEMKRDP 177


>gi|224418108|ref|ZP_03656114.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491]
 gi|253827435|ref|ZP_04870320.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491]
 gi|313141643|ref|ZP_07803836.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491]
 gi|253510841|gb|EES89500.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491]
 gi|313130674|gb|EFR48291.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491]
          Length = 294

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 6/119 (5%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + +LG  NAGKS+  NAL  + +A+V+     TR  + + L  E   +   DT G
Sbjct: 4   RAGF-VAVLGRPNAGKSTFLNALLGERLALVSHKANATRKRMNLVLMQEEAQIVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSD 330
           I + + ++ +  +K     +++ DL+L L  ++ K +     +   KN   + + TKSD
Sbjct: 63  IHKQEKLLNQYMLKEAMQAMQDCDLLLFLAPVSDKIDFYEEFLQSAKNKPHLLLLTKSD 121


>gi|86749568|ref|YP_486064.1| GTP-binding protein EngA [Rhodopseudomonas palustris HaA2]
 gi|123004191|sp|Q2IXA7|DER_RHOP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|86572596|gb|ABD07153.1| GTP-binding protein [Rhodopseudomonas palustris HaA2]
          Length = 459

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+  N L  +D  + +   GTTRD + ++++ +G   +I DTAG+R  
Sbjct: 189 RVAIVGRPNAGKSTFINRLLGEDRLLTSPEAGTTRDSIAVEVNWKGREFRIFDTAGLRRR 248

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKE 313
             I   +EK  +      V  A++++L+ +  ++ E
Sbjct: 249 SRIEEKLEKLSVADALRAVRFAEVVVLMMDSQNRFE 284



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +   I+G  N GKS+LFN L  + +A+V D PG TRD    +  L      I DTAG+ E
Sbjct: 3   FTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGEGRLGDLEFTIIDTAGLDE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSD 330
                +     ++T   +E AD ++ + +       N +    F +  N   + +  KS+
Sbjct: 63  GAKGSLTARMQQQTETAIELADALMFVFDARAGLTPNDRAFADFARRANKPVVLVANKSE 122

Query: 331 LYS---TYTEEY-----DHL-ISSFTGEGLEELINKIKSIL 362
             +      E Y     D + IS+  GEGL EL + +++I+
Sbjct: 123 GKAGGIGAMESYALGLGDPVQISAEHGEGLSELYDALRAIM 163


>gi|84496370|ref|ZP_00995224.1| GTP-binding protein EngA [Janibacter sp. HTCC2649]
 gi|84383138|gb|EAP99019.1| GTP-binding protein EngA [Janibacter sp. HTCC2649]
          Length = 497

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +VL+ IL +  D S+  +  + G       ++ +LG  N GKSS+ N LA  +  +V 
Sbjct: 209 SGDVLDAILAVLPDKSAVSAYQRGGP-----RRVALLGRPNVGKSSMLNKLAGSERVVVD 263

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           D+ GTTRD +   ++L G   +  DTAGIR
Sbjct: 264 DVAGTTRDPVDEFIELGGKTWRFVDTAGIR 293



 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 10/82 (12%)

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           N GKS+L N +  +  A+V D+PG TRD +  D +  G    + DT G       V+ +G
Sbjct: 70  NVGKSTLVNRIIGRREAVVEDVPGVTRDRVAYDAEWTGTNFTLVDTGGWS-----VDAKG 124

Query: 289 I-----KRTFLEVENADLILLL 305
           I     ++  + VE AD +L +
Sbjct: 125 IHLRVAEQAEIAVELADAVLFV 146


>gi|160942963|ref|ZP_02090201.1| hypothetical protein FAEPRAM212_00440 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445657|gb|EDP22660.1| hypothetical protein FAEPRAM212_00440 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103496|emb|CBL01040.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii
           SL3/3]
          Length = 447

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L  + +AIV D PG TRD +  + +  G+   + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWNGHEFLLVDTGGIEPK- 64

Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKEINS 310
                EGI     ++  + ++ AD I+++ ++ +
Sbjct: 65  ---ATEGILAHMREQAQIAIDTADCIIMVTDVRN 95



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +  ++  IV +  GTTRD +   +D        +DTAG+R+  
Sbjct: 179 VAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDAIDTPVDNAYGKFIFTDTAGLRKRS 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
           +I   +E+  + R    VE + + L+L
Sbjct: 239 NISDGLERYMVVRALAAVERSRVALIL 265


>gi|300818566|ref|ZP_07098774.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|300528738|gb|EFK49800.1| conserved hypothetical protein [Escherichia coli MS 107-1]
          Length = 290

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|297195224|ref|ZP_06912622.1| GTP-binding protein engA [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297152707|gb|EFH31948.1| GTP-binding protein engA [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 494

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            G  +    +I ++G  N GKSSL N +A+++  +V ++ GTTRD +   ++L G   K 
Sbjct: 224 FGTAVGGPRRIALIGRPNVGKSSLLNKVAREERVVVNELAGTTRDPVDELIELGGVTWKF 283

Query: 272 SDTAGIRE 279
            DTAGIR+
Sbjct: 284 VDTAGIRK 291



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G
Sbjct: 59  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGG 113


>gi|296116360|ref|ZP_06834975.1| GTP-binding protein EngA [Gluconacetobacter hansenii ATCC 23769]
 gi|295977060|gb|EFG83823.1| GTP-binding protein EngA [Gluconacetobacter hansenii ATCC 23769]
          Length = 470

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +VI G  N GKS++FN L  +  A+V D PG TRD    +  + G  +++ DTAG+ E 
Sbjct: 16  VVIAGRPNVGKSTIFNRLVGRRQALVADTPGVTRDRKESETTVRGRRIRLIDTAGLEEA 74



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N L  ++  I    PG TRD +++ L  +   +++ DTAG+R  
Sbjct: 204 RLAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSVSVMLHDDEGPIQLVDTAGLRRK 263

Query: 281 ---DDIVEKEGIKRTFLEVENADLILL 304
              D+ +EK  +  +   ++ A++++L
Sbjct: 264 ARIDETLEKMSVSASIEALKMAEVVIL 290


>gi|15604520|ref|NP_221038.1| GTP-binding protein EngA [Rickettsia prowazekii str. Madrid E]
 gi|8928120|sp|Q9ZCP6|DER_RICPR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|3861214|emb|CAA15114.1| unknown [Rickettsia prowazekii]
 gi|292572309|gb|ADE30224.1| GTP-binding protein [Rickettsia prowazekii Rp22]
          Length = 447

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLEENP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D + +  + +T   +  ADLI  +
Sbjct: 66  DNMGERLMGQTTQAILEADLICFM 89



 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV+ G  NAGKS+  NA+   +  +     G TR+ + +D   +   +K+ DTAG+R+ 
Sbjct: 181 QIVVSGRPNAGKSTFINAIINDERLLTGPEAGITRESIEVDWQYKNTHIKLIDTAGLRKK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +EK     T   ++ A+ ++L+
Sbjct: 241 STITASLEKLSTSDTINSIKFANTVILM 268


>gi|332280241|ref|ZP_08392654.1| YeeP protein [Shigella sp. D9]
 gi|332102593|gb|EGJ05939.1| YeeP protein [Shigella sp. D9]
          Length = 303

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 30  LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 88

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 89  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134


>gi|157803303|ref|YP_001491852.1| GTP-binding protein Era [Rickettsia canadensis str. McKiel]
 gi|189037664|sp|A8EXI4|ERA_RICCK RecName: Full=GTPase Era
 gi|157784566|gb|ABV73067.1| GTP-binding protein Era [Rickettsia canadensis str. McKiel]
          Length = 295

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 52/90 (57%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT 
Sbjct: 5   IQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI E    +EK  ++  +  + +ADL++L+
Sbjct: 65  GIFEPKGTLEKAMVRCAWSSLHSADLVMLI 94


>gi|310815879|ref|YP_003963843.1| GTP-binding protein HflX [Ketogulonicigenium vulgare Y25]
 gi|308754614|gb|ADO42543.1| GTP-binding protein HflX [Ketogulonicigenium vulgare Y25]
          Length = 432

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 30/191 (15%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y IV L G++NAGKSSLFN +   DV +  D    T D     L L +G  V +SDT G 
Sbjct: 203 YPIVALVGYTNAGKSSLFNRVTGADV-LAKDQLFATLDPTMRRLTLPDGQEVIMSDTVGF 261

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------EISFPKNIDFIF 324
                       + T  EV  ADLIL +++I+  +             +I  P++   + 
Sbjct: 262 ISDLPTQLVAAFRATLEEVLEADLILHVRDISHPQTAQQARDVMQILHQIGVPEDAPMLE 321

Query: 325 IGTKSDL--------YSTYTEEYDH--LISSFTGEGLEELINKIKSILSNKF----KKLP 370
           +  K DL        + T     D    +S+ TGEG+E L+ +I + L+  F     +LP
Sbjct: 322 VLNKIDLLDEAGREAFQTEAARKDAKIAVSALTGEGVEALLEQISAALAPPFLIEDLRLP 381

Query: 371 FSIPSHKRHLY 381
            +    +  LY
Sbjct: 382 HTAGKLRAWLY 392


>gi|185178903|ref|ZP_02964672.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|195867881|ref|ZP_03079880.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225551179|ref|ZP_03772125.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|184209162|gb|EDU06205.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|195660458|gb|EDX53716.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225378994|gb|EEH01359.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
          Length = 442

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K  I+G  N GKSSL N +  +   IV    G+TRD +  D         I DTAG+R 
Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDSIDNDFSYHNKKYTIIDTAGVRR 234

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              I   VEK  + RT   +E + LILL+
Sbjct: 235 KGKIVEAVEKYAVLRTQKAIERSQLILLV 263



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK---ISDTAGIR 278
           I I+G  N GKSSLFN +  +  +IV D PG TRD +    D+  +L +   + DT GI 
Sbjct: 4   IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRI---YDVGNWLTRDFMLIDTGGII 60

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
            ++D  +    ++    +  A+ I+ L
Sbjct: 61  SSEDTYQDNINEQVLFAINEANTIIFL 87


>gi|124088127|ref|XP_001346973.1| GTP-binding protein [Paramecium tetraurelia strain d4-2]
 gi|145474647|ref|XP_001423346.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057362|emb|CAH03346.1| GTP-binding protein, putative [Paramecium tetraurelia]
 gi|74831356|emb|CAI39288.1| rab_C76 [Paramecium tetraurelia]
 gi|124390406|emb|CAK55948.1| unnamed protein product [Paramecium tetraurelia]
          Length = 222

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 53/171 (30%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT-TRDVLTIDLDLEG--------YLVKI 271
           KI++LG+SNAGK+SL        +   TD   T + + + IDL++E         Y + I
Sbjct: 8   KIILLGNSNAGKTSLI-------IKFKTDRFSTDSVNTIGIDLNMEKNVKINNQLYDIAI 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF---------PKN 319
            DTAG        ++  IK      ++A+  ++   L E NS + ++          P+N
Sbjct: 61  WDTAG--------QEIYIKMVKFSAKDANTAMICFDLSESNSLENVATWIQLLREEGPQN 112

Query: 320 IDFIFIGTKSDLYSTYTEE--------------YDH---LISSFTGEGLEE 353
           I  I IGTK DL + YT+E              YD    L SS TGEGL+E
Sbjct: 113 IQIIIIGTKKDLPTKYTQEQLQQVQNAWKANFNYDFPMLLTSSKTGEGLKE 163


>gi|15672737|ref|NP_266911.1| GTP-binding protein EngA [Lactococcus lactis subsp. lactis Il1403]
 gi|26006736|sp|Q9CHH6|DER_LACLA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|12723672|gb|AAK04853.1|AE006309_2 GTP-binding protein [Lactococcus lactis subsp. lactis Il1403]
 gi|326406306|gb|ADZ63377.1| GTP-binding protein [Lactococcus lactis subsp. lactis CV56]
          Length = 436

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 31/144 (21%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + I GTTRD + T  +D E     + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTHFVDSEDQEFVMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  I    EK  + R    ++ +D++L++  IN+++ I                      
Sbjct: 236 SGKIYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINK 357
            EYD  I+ F    G+G+  ++NK
Sbjct: 272 REYDMRIAGFAHEAGKGILIVVNK 295



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV DIPG TRD +    +       I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDIPGVTRDRIYATGEWLTRKFNIIDTGGIELSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    E   +  + +  AD+I+ +
Sbjct: 66  EPFMTEIRAQAEIAMTEADVIIAV 89


>gi|87303080|ref|ZP_01085878.1| GTP-binding protein EngA [Synechococcus sp. WH 5701]
 gi|87282247|gb|EAQ74207.1| GTP-binding protein EngA [Synechococcus sp. WH 5701]
          Length = 455

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N++  +  AIV+ I GTTRD +   ++ EG   K+ DTAGIR  
Sbjct: 178 QLAIIGRPNVGKSSLLNSICGEARAIVSPIRGTTRDTIDTTIEREGKTWKLLDTAGIRRR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E  GI R+F  VE +D+ +L+
Sbjct: 238 RSVSYGPEYFGINRSFKAVERSDVCVLV 265



 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    +        ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQEGFWGDRRFRVVDTGGLVFDD 65

Query: 282 D 282
           D
Sbjct: 66  D 66


>gi|325000201|ref|ZP_08121313.1| GTP-binding protein Der [Pseudonocardia sp. P1]
          Length = 441

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA ++ ++V D+ GTT D +   +DL+G + +  DTAG+R+ 
Sbjct: 181 RVALVGKPNVGKSSLLNKLAGEERSVVHDVAGTTVDPVDSLVDLDGEVFRFVDTAGLRKR 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   +E     RT   +E A++ L+L  I++ + I+
Sbjct: 241 VKMASGMEYYASLRTSSAIEAAEVALVL--IDASQPIA 276



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D    G   K+ DT G     
Sbjct: 7   LAVVGRPNVGKSTLVNRMLGRREAVVQDVPGVTRDRVVYDGLWNGRRFKLMDTGGWEPDA 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
           D ++    ++    +  AD +LL+ + +        +   +     +  +   TK D   
Sbjct: 67  DGLQGFVAQQAETAMRTADAVLLVVDASVGATATDQAAARVLRRAKVPVMLAATKVDDDR 126

Query: 331 LYSTYTEEY------DHLISSFTGEGLEELINKIKSIL 362
           L S   E +       H +S   G G  +L++ I  +L
Sbjct: 127 LTSDTAELWRLGLGQPHPVSGLHGRGSGDLLDAILEVL 164


>gi|189218193|ref|YP_001938835.1| GTP-binding protein EngA [Methylacidiphilum infernorum V4]
 gi|189185051|gb|ACD82236.1| GTP-binding protein EngA [Methylacidiphilum infernorum V4]
          Length = 433

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 5/99 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  NAGKSSL N+L  +   +V + PGTT D + + +++ G      DTAG+++ 
Sbjct: 149 RIAVIGQPNAGKSSLINSLIGESRLVVHEEPGTTHDAVEVGIEVCGVPFTFIDTAGLKKK 208

Query: 281 DDIVEKEGIK---RTFLEVENADLILLLKEINSKKEISF 316
           + + E   IK   RT   +  + L+  +  I+ +K I+ 
Sbjct: 209 NKLQEGLEIKVSGRTVHSINRSHLVWFI--IDGQKGITL 245


>gi|284921995|emb|CBG35073.1| putative GTP-binding protein [Escherichia coli 042]
          Length = 303

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 30  LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 88

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 89  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134


>gi|157826088|ref|YP_001493808.1| GTP-binding protein EngA [Rickettsia akari str. Hartford]
 gi|166225849|sp|A8GPH5|DER_RICAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157800046|gb|ABV75300.1| GTP-binding protein EngA [Rickettsia akari str. Hartford]
          Length = 447

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   IALVGRPNVGKSTLFNRLSIRKKAIVHDLPGITRDRKYTDGKIGSFEFLLIDTPGLEENH 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D +    +++T   +  ADLI  +
Sbjct: 66  DSMGARLMEQTTKAILEADLICFM 89



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 212 LGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           + + I+  Y +IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K
Sbjct: 171 IADPIKGDYLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWHYKNNHIK 230

Query: 271 ISDTAGIRETDDIVE 285
           + DTAG+R+   I E
Sbjct: 231 LIDTAGLRKKSTITE 245


>gi|188518230|ref|ZP_03003765.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|188998276|gb|EDU67373.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
          Length = 442

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K  I+G  N GKSSL N +  +   IV    G+TRD +  D         I DTAG+R 
Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDSIDNDFSYHNKKYTIIDTAGVRR 234

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              I   VEK  + RT   +E + LILL+
Sbjct: 235 KGKIVEAVEKYAVLRTQKAIERSQLILLV 263



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK---ISDTAGIR 278
           I I+G  N GKSSLFN +  +  +IV D PG TRD +    D+  +L +   + DT GI 
Sbjct: 4   IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRI---YDVGNWLTRDFMLIDTGGII 60

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
            ++D  +    ++    +  A+ I+ L
Sbjct: 61  SSEDTYQDNINEQVLFAINEANTIIFL 87


>gi|126732584|ref|ZP_01748381.1| GTP-binding protein EngA [Sagittula stellata E-37]
 gi|126706868|gb|EBA05937.1| GTP-binding protein EngA [Sagittula stellata E-37]
          Length = 488

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+  
Sbjct: 3   FSLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEAKLGDLRFTVIDTAGLEN 62

Query: 280 TDDIVEKEGIKR-TFLEVENADLILLL 305
            +D      ++R T   V+ AD+ L L
Sbjct: 63  ANDDSLPARMRRLTERAVDMADVCLFL 89



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 33/165 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  NAGKS+L N +  +D  +     G TRD +++  +  G  ++I DTAG+R  
Sbjct: 201 QIAVVGRPNAGKSTLINHIIGEDRLLTGPEAGITRDAISLTHEWGGVPMRIFDTAGMRRR 260

Query: 281 DDIVEK-------EGIKRT-FLEV-----------ENADL-ILLLKEINSKKEISFPKNI 320
             + EK       +GI+   F EV           E  DL I  L E   +  +      
Sbjct: 261 SKVQEKLEKLSVSDGIRAVKFAEVVVVLLDAAIPFETQDLKIADLAEREGRAVVVAVNKW 320

Query: 321 DFIFIGTKSDLYSTYTEEYDHL-----------ISSFTGEGLEEL 354
           D    G K +      E+++H+           +S+ TG+GL++L
Sbjct: 321 D--IEGEKQEKLKWLREQFEHVLPQLRGAPLVTVSARTGKGLDKL 363


>gi|300927013|ref|ZP_07142769.1| hypothetical protein HMPREF9548_05002 [Escherichia coli MS 182-1]
 gi|300416990|gb|EFK00301.1| hypothetical protein HMPREF9548_05002 [Escherichia coli MS 182-1]
          Length = 309

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 36  LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 94

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 95  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 140


>gi|281491251|ref|YP_003353231.1| GTP-binding protein [Lactococcus lactis subsp. lactis KF147]
 gi|281374992|gb|ADA64510.1| GTP-binding protein [Lactococcus lactis subsp. lactis KF147]
          Length = 436

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 31/144 (21%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  I + I GTTRD + T  +D E     + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTHFVDSEDQEFVMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +  I    EK  + R    ++ +D++L++  IN+++ I                      
Sbjct: 236 SGKIYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGI---------------------- 271

Query: 337 EEYDHLISSF---TGEGLEELINK 357
            EYD  I+ F    G+G+  ++NK
Sbjct: 272 REYDMRIAGFAHEAGKGILIVVNK 295



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV DIPG TRD +    +       I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDIPGVTRDRIYATGEWLTRKFNIIDTGGIELSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    E   +  + +  AD+I+ +
Sbjct: 66  EPFMTEIRAQAEIAMTEADVIITV 89


>gi|39938726|ref|NP_950492.1| GTP-binding protein EngA [Onion yellows phytoplasma OY-M]
 gi|39721835|dbj|BAD04325.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 478

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  K  ++G  N GKS+L N+L      IV+D+ GTT D +    + +G   +I DTAGI
Sbjct: 213 NIIKFCVVGRPNVGKSTLTNSLLASQRMIVSDMAGTTTDAVDTFFENDGQKYQIIDTAGI 272

Query: 278 RETDDIVEKE---GIKRTFLEVENADLILLL 305
           ++   I E+E    + R    +E AD+  L+
Sbjct: 273 KKRGKIYEQEDKYSVLRALGALEKADIACLV 303



 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +KI I+G  N GKSSLFN +  +  AI     G TRD +    +       + DT GI E
Sbjct: 3   FKIAIVGRPNVGKSSLFNRIIGRRHAITHQKAGITRDRIYATAEWFTKTFGVIDTGGI-E 61

Query: 280 TDDIVEKEGIK-RTFLEVENADLILLL 305
                  E IK +  L V+ AD+I+ +
Sbjct: 62  IQSTPFLEQIKLQAQLAVDEADVIVFV 88


>gi|111017940|ref|YP_700912.1| GTP-binding protein EngA [Rhodococcus jostii RHA1]
 gi|110817470|gb|ABG92754.1| GTP-binding protein [Rhodococcus jostii RHA1]
          Length = 475

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD ++ + +  G    + DT G     
Sbjct: 41  LAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWSGRRFMVQDTGGWEPDA 100

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++   ++  L ++ AD ILL+
Sbjct: 101 KGLQQSVARQAELAMQTADAILLV 124



 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 9/100 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N L+  + ++V ++ GTT D +   ++L G   +  DTAG+R+ 
Sbjct: 213 RVALVGKPNVGKSSLLNKLSGDERSVVHNVAGTTVDPVDSIVELGGRPWRFVDTAGLRKR 272

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315
             +    G +     RT   +E A++ +LL  I++ + IS
Sbjct: 273 --VSHASGAEFYASLRTKSAIEAAEVAILL--IDASEPIS 308


>gi|306812029|ref|ZP_07446235.1| hypothetical protein ECNC101_08969 [Escherichia coli NC101]
 gi|305854533|gb|EFM54970.1| hypothetical protein ECNC101_08969 [Escherichia coli NC101]
          Length = 290

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|317374946|sp|B3DXK2|DER_METI4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
          Length = 460

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 5/99 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  NAGKSSL N+L  +   +V + PGTT D + + +++ G      DTAG+++ 
Sbjct: 176 RIAVIGQPNAGKSSLINSLIGESRLVVHEEPGTTHDAVEVGIEVCGVPFTFIDTAGLKKK 235

Query: 281 DDIVEKEGIK---RTFLEVENADLILLLKEINSKKEISF 316
           + + E   IK   RT   +  + L+  +  I+ +K I+ 
Sbjct: 236 NKLQEGLEIKVSGRTVHSINRSHLVWFI--IDGQKGITL 272



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I I+G  N GKS LFN L  K++++V D PG TRD +   +  EG  + + DT G+
Sbjct: 4   IAIVGRPNVGKSLLFNRLCGKEISLVYDQPGVTRDRIVCCIKKEGKEIVLVDTGGL 59


>gi|331668216|ref|ZP_08369068.1| conserved hypothetical protein [Escherichia coli TA271]
 gi|331064730|gb|EGI36637.1| conserved hypothetical protein [Escherichia coli TA271]
          Length = 290

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|297198669|ref|ZP_06916066.1| ribosome-associated GTPase EngA [Streptomyces sviceus ATCC 29083]
 gi|297147167|gb|EDY58617.2| ribosome-associated GTPase EngA [Streptomyces sviceus ATCC 29083]
          Length = 492

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           Q   G  I    +I ++G  N GKSSL N +A ++  +V ++ GTTRD +   ++L G  
Sbjct: 218 QQTFGTAIGGPRRIALIGRPNVGKSSLLNKVAGEERVVVNEMAGTTRDPVDELIELGGVT 277

Query: 269 VKISDTAGIRE 279
            K  DTAGIR+
Sbjct: 278 WKFVDTAGIRK 288



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G  +  
Sbjct: 56  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 115

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     +    +E AD ++ +
Sbjct: 116 LGIDASVAAQAEYAIEAADAVVFV 139


>gi|256019137|ref|ZP_05433002.1| hypothetical protein ShiD9_09494 [Shigella sp. D9]
          Length = 290

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|309797253|ref|ZP_07691648.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|308119128|gb|EFO56390.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|315252264|gb|EFU32232.1| putative GTP-binding protein [Escherichia coli MS 85-1]
          Length = 290

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|254294311|ref|YP_003060334.1| GTP-binding protein EngA [Hirschia baltica ATCC 49814]
 gi|254042842|gb|ACT59637.1| small GTP-binding protein [Hirschia baltica ATCC 49814]
          Length = 483

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 11/122 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  NAGKS+L N+L + D  +     G TRD +T+  + EG  +++ DTAG+R+ 
Sbjct: 202 KFTVVGRPNAGKSTLLNSLLQSDRLLTGPEAGITRDSVTVAWEYEGREMRLVDTAGLRKK 261

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI-----DFIFIGTKS 329
             +   +EK     T   ++ AD++ ++   ++   K+++     +       +F+ TK 
Sbjct: 262 AKVQERLEKMSTGETIHSIKYADVVAIVMDSRDAFEKQDLQIADLVLREGRGVVFVCTKW 321

Query: 330 DL 331
           DL
Sbjct: 322 DL 323



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+LFN L  K +A+V D PG TRD       L    + + DTAG  + 
Sbjct: 4   KVAIVGRPNVGKSTLFNRLVGKKIALVDDQPGVTRDRKEARGRLGDLELDLIDTAGFDDV 63

Query: 281 DDI-VEKEGIKRTFLEVENADLILLL 305
           +D  +E    ++T + +  AD+ L +
Sbjct: 64  NDASLEARMRRQTEMAIAEADVSLYV 89


>gi|26369239|dbj|BAC25298.1| unnamed protein product [Mus musculus]
          Length = 157

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 5/101 (4%)

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKD 399
           L+S  TG G++ L+  +K+ L+          P  +  RH YHL   +  L    L    
Sbjct: 60  LLSCHTGAGMDSLLQALKTELAAVCGDPSTGPPLLTRVRHQYHLQGCLDALGHYQLATD- 118

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + AE LR A   L  +TG    E++LD+IF  FC+GK
Sbjct: 119 --LALAAEALRQARRQLNHLTGGGGTEEILDLIFQDFCVGK 157


>gi|39996482|ref|NP_952433.1| ferrous iron transport protein B [Geobacter sulfurreducens PCA]
 gi|39983362|gb|AAR34756.1| ferrous iron transport protein B [Geobacter sulfurreducens PCA]
          Length = 663

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GKS LFNAL    VA V++ PGT+ +V       EG   +I DT G+   
Sbjct: 23  KVALVGNPNVGKSVLFNALTGAYVA-VSNYPGTSVEVSRGSASFEGGSWEIIDTPGMYSI 81

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
             I E+E + R  L  E  D++L
Sbjct: 82  LPITEEERVAREILLTERPDVVL 104


>gi|226360071|ref|YP_002777849.1| GTP-binding protein EngA [Rhodococcus opacus B4]
 gi|226238556|dbj|BAH48904.1| GTP-binding protein EngA [Rhodococcus opacus B4]
          Length = 475

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD ++ + +  G    + DT G     
Sbjct: 41  LAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWSGRRFMVQDTGGWEPDA 100

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++   ++  L ++ AD ILL+
Sbjct: 101 KGLQQSVARQAELAMQTADAILLV 124



 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 9/100 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N L+  + ++V ++ GTT D +   ++L G   +  DTAG+R+ 
Sbjct: 213 RVALVGKPNVGKSSLLNKLSGDERSVVHNVAGTTVDPVDSIVELGGRPWRFVDTAGLRKR 272

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315
             +    G +     RT   +E A++ +LL  I++ + IS
Sbjct: 273 --VSHASGAEFYASLRTKSAIEAAEVAILL--IDASEPIS 308


>gi|241896284|ref|ZP_04783580.1| GTP-binding protein EngA [Weissella paramesenteroides ATCC 33313]
 gi|241870525|gb|EER74276.1| GTP-binding protein EngA [Weissella paramesenteroides ATCC 33313]
          Length = 436

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 22/160 (13%)

Query: 219 GYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           G+ +V ++G  N GKS++FN +A   ++IV D PG TRD +    +   +  ++ DT GI
Sbjct: 2   GFPVVAVVGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTRAEWLTHEFRLIDTGGI 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKN-I 320
              D+    + +++  + ++ AD+I+ +                    SKK +    N +
Sbjct: 62  DMGDEPFMSQIVQQAEIAIDEADVIVFMVSAREGLTEADERVAKILYRSKKPVVLAVNKV 121

Query: 321 DFIFIGTKSDLYSTYTEEY--DHLISSFTGEGLEELINKI 358
           D I +  +S++Y  Y   +   + IS   G GL +L++++
Sbjct: 122 DNIEL--RSEIYEFYALGFGDPYPISGAHGTGLGDLLDQV 159



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRETDDI 283
           +G  N GKSSL NA+  ++  IV+DI GTTRD + T      G    + DTAGIR+   +
Sbjct: 180 IGRPNVGKSSLVNAILGEERVIVSDISGTTRDAIDTRFTSAYGDEFVMVDTAGIRKRGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +++++++L++
Sbjct: 240 YESTEKYSVMRAMRAIDDSNVVLVV 264


>gi|218290942|ref|ZP_03494999.1| small GTP-binding protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239107|gb|EED06310.1| small GTP-binding protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 442

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G +N GKS+LFN L  + V+IV D PG TRD +    +  G   ++ DT GI E D
Sbjct: 6   VAIVGRANVGKSTLFNRLVGRRVSIVEDTPGVTRDRIYGKSEWNGVPFRVIDTGGI-EMD 64

Query: 282 DIVEKEGIKRTFLE--VENADLILLL 305
           +  E   + R   +  ++ AD+IL +
Sbjct: 65  EEDEIGNLIRVQAQIAIDEADVILFV 90



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  +I  +G  N GKSSL N L  ++  +V+ + GTTRD +   L+ +G    + DTAG+
Sbjct: 175 DAIRIAFIGRPNVGKSSLVNRLLGEERVMVSPVAGTTRDAVDTPLERDGQSYVLVDTAGM 234

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305
           R    +   +EK  + R    ++ AD+  ++
Sbjct: 235 RRKGKVYERIEKYSVLRALRALDRADVAFVV 265


>gi|189183414|ref|YP_001937199.1| GTP-binding protein EngA [Orientia tsutsugamushi str. Ikeda]
 gi|238692236|sp|B3CR58|DER_ORITI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189180185|dbj|BAG39965.1| GTP-binding protein, Era/Obg family [Orientia tsutsugamushi str.
           Ikeda]
          Length = 454

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   ++ I+G  N GKS+  NA+  +D  +     G TR+ + ID +  G+L+++ DTAG
Sbjct: 185 RPELELAIVGRPNCGKSTFINAILNEDRVLTGPQSGLTRNSVEIDWEYYGHLIRLVDTAG 244

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLL 305
           +R+ + +    E   +  TF  +  A++++++
Sbjct: 245 VRKKNAVTQSCELLSVNDTFKTIRFANIVVVM 276



 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 93/198 (46%), Gaps = 22/198 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L+ ++ +IV D+PG TRD      +L   L+ + DT G+    
Sbjct: 6   VALVGKPNVGKSTLFNRLSLREKSIVHDLPGITRDRKYAKANLFSDLI-VVDTPGLEFAA 64

Query: 281 DDIVEKEGIKRTFLEVENADL----------ILLLKEINSKKEISFPKNIDFIFIGTKSD 330
              +E   ++++ + +  A +          IL + E  +       K    I +  K++
Sbjct: 65  AGSLEFNMMQQSLVAINEAHIICFVVDAITGILPIDEECANLIRKHNKQSSTILVINKTE 124

Query: 331 LYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                 + Y  L       IS+  G+G+ EL + I++ILS   KK+ F   ++ +  Y+ 
Sbjct: 125 KPIILDKSYYKLGFSESVCISAKHGQGIYELGDIIQNILSED-KKINFLTTTNTKCEYN- 182

Query: 384 SQTVRYLEMASLNEKDCG 401
            Q    LE+A +   +CG
Sbjct: 183 -QQRPELELAIVGRPNCG 199


>gi|188024473|ref|ZP_02997121.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|209554037|ref|YP_002284819.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|238058980|sp|B5ZBM9|DER_UREU1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|188018583|gb|EDU56623.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|209541538|gb|ACI59767.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 442

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K  I+G  N GKSSL N +  +   IV    G+TRD +  D         I DTAG+R 
Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDSIDNDFSYHNKKYTIIDTAGVRR 234

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              I   VEK  + RT   +E + LILL+
Sbjct: 235 KGKIVEAVEKYAVLRTQKAIERSQLILLV 263



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK---ISDTAGIR 278
           I I+G  N GKSSLFN +  +  +IV D PG TRD +    D+  +L +   + DT GI 
Sbjct: 4   IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRI---YDVGNWLTRDFMLIDTGGII 60

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
            ++D  +    ++    +  A+ I+ L
Sbjct: 61  SSEDTYQDNINEQVLFAINEANTIIFL 87


>gi|194334612|ref|YP_002016472.1| GTP-binding protein EngA [Prosthecochloris aestuarii DSM 271]
 gi|238693304|sp|B4S433|DER_PROA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|194312430|gb|ACF46825.1| small GTP-binding protein [Prosthecochloris aestuarii DSM 271]
          Length = 436

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN +  +  AIV   PG TRD   +  +  G    + DT G     
Sbjct: 5   VALVGRPNVGKSTLFNRITHQKSAIVDSTPGVTRDRHIMPAEWIGKEFLVMDTGGYCHDS 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           D + K  +++T   +  AD+I+ L ++ S
Sbjct: 65  DGISKAMLEQTLTAIGEADVIIFLVDVRS 93



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSS  NAL   +  IV++ PGTTRD +       G  + + DTAG+R+ 
Sbjct: 178 RLAIIGRPNVGKSSFVNALLGTNRNIVSNKPGTTRDAIDTRFKRNGREIVLIDTAGLRKR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +E     RT   +E  D+ L+L
Sbjct: 238 ARIDAGIEFYSSLRTERAIERCDVALVL 265


>gi|224368191|ref|YP_002602354.1| Era [Desulfobacterium autotrophicum HRM2]
 gi|223690907|gb|ACN14190.1| Era [Desulfobacterium autotrophicum HRM2]
          Length = 300

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKS+L N +  + ++I +  P TTRD +   ++  G  +   DT GI    
Sbjct: 16  IAIVGAPNAGKSTLLNTVLGQKISITSKKPQTTRDRILGVVERPGAQIIFVDTPGIHRAH 75

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
            ++ K+ + +    V++ D +LL+ ++ SK
Sbjct: 76  SLLNKKIVDQALSAVDDVDAVLLMIDVTSK 105


>gi|139474375|ref|YP_001129091.1| GTP-binding protein EngA [Streptococcus pyogenes str. Manfredo]
 gi|166225865|sp|A2RGB0|DER_STRPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|134272622|emb|CAM30889.1| GTP-binding protein EngA [Streptococcus pyogenes str. Manfredo]
          Length = 436

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R++  
Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           I    EK  + R    ++ + ++L++  IN+++ I                       EY
Sbjct: 239 IYENTEKYSVMRAMRAIDRSGVVLMV--INAEEGI----------------------REY 274

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  +I
Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTI 299



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV DI G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDIEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + +E AD+I+ +
Sbjct: 66  APFMEQIKHQAQIAMEEADVIVFV 89


>gi|255011303|ref|ZP_05283429.1| putative GTPase [Bacteroides fragilis 3_1_12]
 gi|313149114|ref|ZP_07811307.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137881|gb|EFR55241.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 394

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 17/168 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDT 274
           + N   I + G  N+GKSSL NAL  ++ A+V++I GTT D +   +++ G    +  DT
Sbjct: 6   LSNRLHIALFGKRNSGKSSLINALTNQNAALVSNIAGTTTDPVYQPMEIHGIGPCVFIDT 65

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKK---EISFPKNIDFIFIGTK 328
           AG  +  ++     I+RT   V+  D+ L++    E++ +K   E+   K I ++ I  K
Sbjct: 66  AGFDDNGELGSLR-IERTVQAVDKTDIALMVCCDTELSEEKRWIELLKEKGIPYLLILNK 124

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIK------SILSNKFKKLP 370
           +DL     E  + L    TGE    LI   K      SI  +  +KLP
Sbjct: 125 ADLSENPKETANEL-ERQTGE--RPLIVSAKEKTGMDSICRSILQKLP 169


>gi|269791764|ref|YP_003316668.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099399|gb|ACZ18386.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 398

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 21/168 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I I G  NAGKSSL NAL  +D A+V+  PGTT D +   ++L   G +V I DTA
Sbjct: 7   NRLHIAIFGRRNAGKSSLINALTGQDAALVSSEPGTTTDPVMKAMELLPIGPVVFI-DTA 65

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIG 326
           GI +  ++ +   ++RT   ++  DL LL+          E     E+   + I  + + 
Sbjct: 66  GIDDQGELGQLR-VERTRRVLDRTDLALLVVSPPVTDLSMEEGWLAELRG-RGIPVVGVF 123

Query: 327 TKSD---LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFK 367
            KSD   L   +      L    +S+ TG+G++EL   I+  +   ++
Sbjct: 124 NKSDQGELPVQWVSGRLGLRLTPVSALTGDGIQELKAAIQEAVPEGWE 171


>gi|238855193|ref|ZP_04645512.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 269-3]
 gi|260664556|ref|ZP_05865408.1| ribosome-associated GTPase EngA [Lactobacillus jensenii SJ-7A-US]
 gi|282932513|ref|ZP_06337938.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1]
 gi|313471978|ref|ZP_07812470.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 1153]
 gi|238832085|gb|EEQ24403.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 269-3]
 gi|239529090|gb|EEQ68091.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 1153]
 gi|260561621|gb|EEX27593.1| ribosome-associated GTPase EngA [Lactobacillus jensenii SJ-7A-US]
 gi|281303462|gb|EFA95639.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1]
          Length = 436

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD         G+   I DT GI    
Sbjct: 6   VAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
             +E E   +  + +E AD+I+++  +
Sbjct: 66  GRIEDEIRAQADIAMEEADVIVMITSV 92



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 30/180 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDD 282
           ++G  N GKSS+ NA+  +   IV +  GTTRD +      E G   ++ DTAGIR    
Sbjct: 179 VIGRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVDTPFVAEDGTKFRMIDTAGIRRRGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNI--DFIFIGTKSDL 331
           +    EK  + R    ++ +D++ L+ + ++      K    F  +     + +  K DL
Sbjct: 239 VYEKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQDKHVAGFAHDAGRGMLIVVNKWDL 298

Query: 332 -----------YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                           EE+ +L       +S+ TG+ LE+L + IK +  N+ +++  S+
Sbjct: 299 PKKDSNSAKDFTRVIREEFQYLDYAPIVFVSAKTGKNLEQLPDLIKEVAENQSQRIQSSV 358


>gi|261337755|ref|ZP_05965639.1| ribosome-associated GTPase EngA [Bifidobacterium gallicum DSM
           20093]
 gi|270277209|gb|EFA23063.1| ribosome-associated GTPase EngA [Bifidobacterium gallicum DSM
           20093]
          Length = 709

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E     +  + VE AD ++L+
Sbjct: 335 EGIESAIASQAQIAVELADAVILV 358



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N L+  + A+V D+ GTTRD +   +D+D + YL    DTAGI+
Sbjct: 449 RVALVGRPNVGKSSLLNQLSHSERAVVNDLAGTTRDPVDEIVDIDGQDYL--FIDTAGIK 506

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
                +   E     RT   +E ++L L+L
Sbjct: 507 RRQHKLSGAEYYSSLRTQAAIERSELALVL 536


>gi|223558111|gb|ACM91114.1| putative GTPase [uncultured bacterium Rlip2]
          Length = 171

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 6/100 (6%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++Q   GE +  G    + G  NAGKSSL NAL  +  A+V+D+ GTT D +   ++L G
Sbjct: 1   MNQAARGERVHIG----VFGRRNAGKSSLLNALTGQQAALVSDVAGTTTDPVYQPMELHG 56

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
              V   DTAG  +T  ++    ++RT      AD+ L+L
Sbjct: 57  AGAVVFIDTAGFDDT-GMLGGMRVERTRSAAARADIALVL 95


>gi|197294798|ref|YP_001799339.1| GTP-binding protein EngA [Candidatus Phytoplasma australiense]
 gi|171854125|emb|CAM12114.1| GTP-binding protein [Candidatus Phytoplasma australiense]
          Length = 439

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  K  I+G  N GKS+L N+L      +V+DI GTT D +      EG   +I DTAGI
Sbjct: 177 NVIKFCIIGRPNVGKSTLTNSLLFSQRMVVSDIAGTTTDAIDTFFINEGQKYQIIDTAGI 236

Query: 278 RETDDIVEKE---GIKRTFLEVENADLILLL 305
           ++   I E+E    + R    + N D+  L+
Sbjct: 237 KKRGKIYEQEDKYSVLRALQTLANCDIACLV 267



 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSLFN L  K  AI     G TRD +    +       + DT GI E 
Sbjct: 3   KIAIVGRPNVGKSSLFNRLIGKRQAITHHKEGITRDRIYAQANWLTRTFDVIDTGGI-EF 61

Query: 281 DDIVEKEGIKRTF-LEVENADLILLL 305
             I   E IK+   L ++ AD+I+ +
Sbjct: 62  QAIPFLEQIKQQAQLAIDEADVIIFV 87


>gi|162456368|ref|YP_001618735.1| ferrous iron transport protein B [Sorangium cellulosum 'So ce 56']
 gi|161166950|emb|CAN98255.1| ferrous iron transport protein B [Sorangium cellulosum 'So ce 56']
          Length = 653

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 5/78 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK-ISDTAGIRET 280
           I +LG  N+GKSSLFN L     A V + PG T D+LT D+ L G  V  I+D  G+   
Sbjct: 20  IALLGRPNSGKSSLFNRLTGGS-AHVGNFPGITVDILTADVRLAGGAVATIADLPGLYSI 78

Query: 281 DDIVEK---EGIKRTFLE 295
           + +V+    EG+ R FL+
Sbjct: 79  EAVVDPATDEGVARRFLD 96


>gi|15889576|ref|NP_355257.1| GTP-binding protein EngA [Agrobacterium tumefaciens str. C58]
 gi|26006719|sp|Q8UD28|DER_AGRT5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|15157462|gb|AAK88042.1| GTP-binding protein [Agrobacterium tumefaciens str. C58]
          Length = 476

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L      I DTAG+ +
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLIDLRFTIIDTAGLEQ 62

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLL 305
           +  + ++     +T   ++ AD+ L +
Sbjct: 63  SGPETLQGRMWAQTEAAIDEADVTLFV 89



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R  
Sbjct: 206 RVAIIGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 265

Query: 281 DDIVEK 286
             + EK
Sbjct: 266 AKVTEK 271


>gi|332297312|ref|YP_004439234.1| small GTP-binding protein [Treponema brennaborense DSM 12168]
 gi|332180415|gb|AEE16103.1| small GTP-binding protein [Treponema brennaborense DSM 12168]
          Length = 465

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDD 282
           I G  N+GKS+L NA+  ++ A+ + + GTT D +   ++L G   V   DTAG  +T +
Sbjct: 16  IFGRMNSGKSTLLNAITGQNAALTSPVKGTTTDPVYKPMELHGVGPVVFIDTAGFDDTGE 75

Query: 283 IVEKEGIKRTFLEVENADLILLLKE 307
           + EK  I +T L  E  D+ LL+ E
Sbjct: 76  LGEKR-IAQTLLAAEKTDVALLVWE 99


>gi|257439162|ref|ZP_05614917.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii
           A2-165]
 gi|257198413|gb|EEU96697.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii
           A2-165]
          Length = 447

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 27/160 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L  + +AIV D PG TRD +  + +  G+   + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWSGHEFMLVDTGGIEPK- 64

Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKEIN-----SKKEISF---PKNIDFIFIGTK 328
                EGI     ++  + ++ AD I+++ ++      + +E++      +   I    K
Sbjct: 65  ---ATEGILAHMREQAEIAIDTADCIIMVVDVRDGLTAADEEVAHMLRRSHKPIILAVNK 121

Query: 329 SD--------LYSTYTEEYDHL--ISSFTGEGLEELINKI 358
            D        LY  Y   +D +  ISS  G G  +L++ +
Sbjct: 122 CDKTGEAPMELYEFYNLGFDEVLPISSVHGHGTGDLLDAV 161



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +  ++  IV +  GTTRD +   +D        +DTAG+R+  
Sbjct: 179 VAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDAIDTPVDNAYGKFIFTDTAGLRKRS 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
           +I   +E+  + R    VE + + L+L
Sbjct: 239 NISDGLERYMVVRALAAVERSRVALIL 265


>gi|119385154|ref|YP_916210.1| GTP-binding protein EngA [Paracoccus denitrificans PD1222]
 gi|166225834|sp|A1B4S0|DER_PARDP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|119374921|gb|ABL70514.1| small GTP-binding protein [Paracoccus denitrificans PD1222]
          Length = 489

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 29/167 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           +I ++G  NAGKS+L N +  +D  +     G TRD +++  +  G  V+I DTAG+R+ 
Sbjct: 200 QIAVIGRPNAGKSTLINKILGEDRLLTGPEAGITRDSISVSTNFMGTPVRIFDTAGMRKK 259

Query: 280 --TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF--------IFIGTKS 329
               D VEK  +      V  A+++++L ++    E    +  DF        +    K 
Sbjct: 260 ARVTDKVEKLSVADGLRAVRFAEVVVVLLDVGIPFEQQDLRIADFAETEGRAVVVAANKW 319

Query: 330 DLYSTYTEEYDHL------------------ISSFTGEGLEELINKI 358
           DL     E+   L                  +S+ TG+GL+ L N I
Sbjct: 320 DLEEDKPEKLKELREAFERLLPQLKGAPLVTVSARTGKGLDRLHNAI 366



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + D+AG+  
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAGRLGDLRFIVVDSAGLEI 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
             DD ++    + T   V+ AD+ L +
Sbjct: 63  AEDDSLQGRMRRLTERAVDEADVCLFV 89


>gi|226227007|ref|YP_002761113.1| GTP-binding protein EngA [Gemmatimonas aurantiaca T-27]
 gi|259645877|sp|C1A8T3|DER_GEMAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226090198|dbj|BAH38643.1| GTP-binding protein EngA [Gemmatimonas aurantiaca T-27]
          Length = 436

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 14/149 (9%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+  ++ ++G  N GKSS  N L  +D  +V+D  GTTRD +   +      +   DTAG
Sbjct: 171 RDAVRVAVIGRPNVGKSSFVNRLLGEDRLVVSDESGTTRDAIDAPMRYHDTDLVFVDTAG 230

Query: 277 IRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFI 325
           +R     DD VE     RT   ++++D+ +L+ +     +        +++      I +
Sbjct: 231 LRRQSRIDDGVEFYSALRTRRAIDSSDVCILMIDATEGLQNQDLKIATMAWEAGRGLILV 290

Query: 326 GTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
             K DLY   T   D     F  E +E++
Sbjct: 291 INKWDLYEDKT---DKSADKFKKEAVEKV 316



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS LFN +  +  AIV+D  GTTRD    + +  G    + DT G+ E  
Sbjct: 6   VAVVGRPNVGKSHLFNRVIGEATAIVSDEAGTTRDRHFGEAEWAGRQFWLVDTGGLVEDS 65

Query: 282 DIVEKEGIKRTFLE-VENADLILLL 305
            ++    I+R  ++ +E ADL+L +
Sbjct: 66  HLLMDTAIRRQVMQAIEEADLMLFV 90


>gi|85057761|ref|YP_456677.1| GTP-binding protein EngA [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789866|gb|ABC65598.1| GTP-binding protein [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 479

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKS+L N+L      IV+D+ GTT D +    + +G   +I DTAGI++ 
Sbjct: 217 KFCVVGRPNVGKSTLTNSLLASQRMIVSDMAGTTTDAVDTFFENDGQKYQIIDTAGIKKR 276

Query: 281 DDIVEKEGIKRTFLE----VENADLILLL 305
             I E+E  K +FL     +E AD+  L+
Sbjct: 277 GKIYEQED-KYSFLRALGALEKADIACLV 304



 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           +KI I+G  N GKSSLFN +  K  AI     G TRD +            + DT GI  
Sbjct: 3   FKIAIVGRPNVGKSSLFNRIIGKRHAITHQKKGITRDRIYATAHWLTKTFGVIDTGGIEI 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           ++   +E+  I+   L V+ AD+I+ +
Sbjct: 63  KSTPFLEQIKIQAQ-LAVDEADVIVFV 88


>gi|268315826|ref|YP_003289545.1| GTP-binding protein Era [Rhodothermus marinus DSM 4252]
 gi|262333360|gb|ACY47157.1| GTP-binding protein Era [Rhodothermus marinus DSM 4252]
          Length = 311

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 28/165 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + I+G  N GKS+L NAL    ++IVT  P TTR  +   L  + Y +   DT G
Sbjct: 24  RSGY-VAIVGKPNVGKSTLMNALLGHKLSIVTPKPQTTRHRVLGILSGDTYQIVFLDTPG 82

Query: 277 IRETDDIVEKEGIKRTF-LEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS------ 329
           + +       E + RT    V +ADL+L + E   K     P  I    +G +       
Sbjct: 83  VLKKARYKLHEHMLRTVDRAVADADLVLFMAEATQKA----PDTISLGHLGNRPAILALN 138

Query: 330 ------------DLYSTYTEEYDH----LISSFTGEGLEELINKI 358
                        L   Y ++Y       IS+ TG  L+ L+ +I
Sbjct: 139 KMDLVRNQEQVLPLVDAYMKQYPFEAVVPISALTGYNLDVLLKEI 183


>gi|171059545|ref|YP_001791894.1| GTP-binding protein EngA [Leptothrix cholodnii SP-6]
 gi|238689085|sp|B1XXK9|DER_LEPCP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|170776990|gb|ACB35129.1| small GTP-binding protein [Leptothrix cholodnii SP-6]
          Length = 448

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ + G  N GKS+L N    ++  +  D+PGTTRD + +  +      ++ DTAG+R  
Sbjct: 183 RLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAIHVPFERGDKKYELIDTAGLRRK 242

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + +T   + +A+++LLL
Sbjct: 243 GKVFESIEKFSVVKTLQAISDANVVLLL 270



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I I+G  N GKS+LFN L  +  AIV D  G TRD    D  L+ +   + DT G
Sbjct: 5   IAIVGRPNVGKSTLFNRLTGRRDAIVADFAGLTRDRHYGDGKLDNHEFIVIDTGG 59


>gi|332298977|ref|YP_004440899.1| GTP-binding protein engA [Treponema brennaborense DSM 12168]
 gi|332182080|gb|AEE17768.1| GTP-binding protein engA [Treponema brennaborense DSM 12168]
          Length = 497

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           L +KN   S + + +  + IR    + I+G  N GKS+L N L     +IV D  GTTRD
Sbjct: 209 LIVKNLDFSRVERDESAKPIR----VAIMGKPNTGKSTLSNKLTHTQASIVCDYAGTTRD 264

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           V+      +     + DTAGIR    +   +E   + R    +++ D++ L+
Sbjct: 265 VVEGSFTYQDTAFLVLDTAGIRRKARVSENIEYYSVNRAIKTLDDTDVVFLM 316



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 34/62 (54%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           RN   +VI G  N GKS+LFN + +K  AI    PG TRD +     + G  V++ DT G
Sbjct: 47  RNLPLVVIAGRPNVGKSTLFNRILRKRRAITDPTPGVTRDPIEETAFINGCPVRLMDTGG 106

Query: 277 IR 278
            +
Sbjct: 107 FK 108


>gi|227549322|ref|ZP_03979371.1| GTP-binding protein EngA [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078641|gb|EEI16604.1| GTP-binding protein EngA [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 497

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 35/180 (19%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N L++ + ++V ++ GTT D +   + L+G L K  DTAG+R+ 
Sbjct: 236 RVAIVGRPNVGKSSLLNKLSRSNRSVVDNVAGTTVDPVDELIQLDGALWKFIDTAGLRKK 295

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEISFPKN--IDFIFIGTKS---- 329
             +    G +     RT   +E A++ ++L  I++ +EIS      I  +    K+    
Sbjct: 296 --VKNARGHEYYASLRTRGTIEAAEVCVVL--IDASQEISEQDQRVISMVLEAGKAMVIC 351

Query: 330 ---------DLYSTYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKL 369
                    D    +  E+D +           IS+ TG GL  L   +   L N  K++
Sbjct: 352 FNKWDLMDEDRRYYFDREFDEMMGHLPWVTKLNISADTGRGLHRLEAAMTEALENWDKRI 411



 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKS+L N    +  A+V D PG TRD ++   D  G    + DT G
Sbjct: 63  VSIVGRPNVGKSTLVNRFIGRREAVVEDHPGVTRDRVSYISDWNGRRFWVQDTGG 117


>gi|113971588|ref|YP_735381.1| small GTP-binding protein [Shewanella sp. MR-4]
 gi|113886272|gb|ABI40324.1| small GTP-binding protein [Shewanella sp. MR-4]
          Length = 412

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 26/173 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
           Y I ++G  NAGKSSL N +A + ++IV+DI GTT D +T   +L+    V   DTAGI 
Sbjct: 22  YHIALVGRRNAGKSSLLNMIAGQQISIVSDIKGTTTDAVTKAYELQPLGPVTFYDTAGI- 80

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE-----------INSKKEISFPKNIDFIFIGT 327
           + D  +    +K T   +  +D+ LL+ +           +N  +++  P     + +  
Sbjct: 81  DDDGELGAMRVKATRKVLFRSDMALLVVDEQGLYPSDIALVNEIQQMRMP----ILVVFN 136

Query: 328 KSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
           K+D+ +   E+            ++S+ TG   + L   I  +   ++K+ P 
Sbjct: 137 KADICTPKAEDIAFCQQQSLPFIVVSATTGLAAKMLKQLIIDLAPAEYKQEPM 189


>gi|300992774|ref|ZP_07180049.1| small GTP-binding protein [Escherichia coli MS 45-1]
 gi|300406801|gb|EFJ90339.1| small GTP-binding protein [Escherichia coli MS 45-1]
          Length = 276

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 38  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 96

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   GY + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 97  RFRLSGHGYSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 142


>gi|304316658|ref|YP_003851803.1| GTP-binding protein Era [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778160|gb|ADL68719.1| GTP-binding protein Era [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 299

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 6/87 (6%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G +N GKS+L NAL ++ VAI +D P TTR+ +   L  E Y V   DT GI +    
Sbjct: 10  LIGRTNVGKSTLLNALLEEKVAITSDKPQTTRNTIQGILTGEDYQVVFIDTPGIHKPKHK 69

Query: 284 VEK---EGIKRTFLEVENADLILLLKE 307
           + +   E +K+T  EV   DLI+ + E
Sbjct: 70  LSEIMIESVKKTLTEV---DLIIYMVE 93


>gi|42523421|ref|NP_968801.1| GTP-binding protein [Bdellovibrio bacteriovorus HD100]
 gi|39575627|emb|CAE79794.1| probable GTP-binding protein [Bdellovibrio bacteriovorus HD100]
          Length = 449

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+LFN + +   A+V +  G TRD++   +D+ G    + DT GI E 
Sbjct: 12  KVAIIGRPNVGKSTLFNIITETRKAVVKNQAGVTRDIMIEPVDIWGKQFDLIDTGGITEA 71

Query: 281 DDIVEK 286
            DI  K
Sbjct: 72  GDIFSK 77



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 34/190 (17%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++ G  I I+G  N GKSS+ NA+   +  IV+DI GTT D +            + DTA
Sbjct: 177 VKEGMNIAIVGKPNVGKSSICNAILGYNRMIVSDIAGTTIDSVDSPFVYNDKKYTLVDTA 236

Query: 276 GIRETDDIVEKEGIKRTFLEVE---NADLILLLKEIN---SKKEISFPKNI-----DFIF 324
           G+R +    E   I   F   E    AD++LL+ +     + ++    + I       I 
Sbjct: 237 GLRRSAKREEDLEIISAFKSQEAIRRADIVLLMVDGTVGPTDQDARIMQAILEDHKGVIV 296

Query: 325 IGTKSDLYSTYTEEYD-----------------HLI--SSFTGEGLEELINKIKSILSNK 365
           +  KSDL      EY                  H++  S+ TG GLE+L   I+ +    
Sbjct: 297 VANKSDLGGKEVPEYRKTFREQVERVFHFFTDVHIVFTSAKTGYGLEDLFEMIEKVAH-- 354

Query: 366 FKKLPFSIPS 375
             ++ F +P+
Sbjct: 355 --QMTFRVPT 362


>gi|91977473|ref|YP_570132.1| GTP-binding protein EngA [Rhodopseudomonas palustris BisB5]
 gi|123748964|sp|Q135K8|DER_RHOPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|91683929|gb|ABE40231.1| Small GTP-binding protein domain [Rhodopseudomonas palustris BisB5]
          Length = 460

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+  N L  +D  + +   GTTRD + ++++ +G   +I DTAG+R  
Sbjct: 190 RVAIVGRPNAGKSTFINRLLGEDRLLTSPEAGTTRDSIAVEVNWKGRDFRIFDTAGLRRR 249

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKE 313
             I   +EK  +      V  A++++L+ +  ++ E
Sbjct: 250 SRIEEKLEKLSVADALRAVRFAEVVVLMMDSQNRFE 285



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +   I+G  N GKS+LFN L  + +A+V D PG TRD    +  L      I DTAG+ E
Sbjct: 3   FTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGEGRLGDLEFTIIDTAGLDE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSD 330
                +     ++T   +E AD ++ + +       N +    F +  N   + +  KS+
Sbjct: 63  GAKGSLTARMQQQTETAIELADALMFVFDARAGLTPNDRAFADFARRANKPVVLVANKSE 122

Query: 331 LYS---TYTEEY-----DHL-ISSFTGEGLEELINKIKSIL 362
             +      E Y     D + IS+  GEGL EL + +++++
Sbjct: 123 GKAGEIGAMESYALGLGDPVQISAEHGEGLSELYDALRALM 163


>gi|256851011|ref|ZP_05556400.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 27-2-CHN]
 gi|260661223|ref|ZP_05862137.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 115-3-CHN]
 gi|282932036|ref|ZP_06337494.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1]
 gi|256616073|gb|EEU21261.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 27-2-CHN]
 gi|260548160|gb|EEX24136.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 115-3-CHN]
 gi|281303803|gb|EFA95947.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1]
          Length = 436

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD         G+   I DT GI    
Sbjct: 6   VAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
             +E E   +  + +E AD+I+++  +
Sbjct: 66  GRIEDEIRAQADIAMEEADVIVMITSV 92



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 30/180 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDD 282
           ++G  N GKSS+ NA+  +   IV +  GTTRD +      E G   ++ DTAGIR    
Sbjct: 179 VIGRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVDTPFVAEDGTKFRMIDTAGIRRRGK 238

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNI--DFIFIGTKSDL 331
           +    EK  + R    ++ +D++ L+ + ++      K    F  +     I +  K DL
Sbjct: 239 VYEKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQDKHVAGFAHDAGRGMIIVVNKWDL 298

Query: 332 -----------YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                           EE+ +L       +S+ TG+ L++L + IK +  N+ +++  S+
Sbjct: 299 PKKDSNSAKDFTRVIREEFQYLDYAPIIFVSAKTGKNLDQLPDLIKEVAENQSQRIQSSV 358


>gi|84503431|ref|ZP_01001491.1| GTP-binding protein EngA [Oceanicola batsensis HTCC2597]
 gi|84388218|gb|EAQ01170.1| GTP-binding protein EngA [Oceanicola batsensis HTCC2597]
          Length = 494

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V + PG TRD+   D  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDNQPGVTRDLREGDARLGHLKFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TD+ ++    K T   V  AD+ L +
Sbjct: 63  ATDESLQGRMRKLTERAVGMADVCLFV 89



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ ++G  NAGKS+L N +  ++  +     G TRD +++ LD EG  V++ DTAG+R  
Sbjct: 209 QVAVVGRPNAGKSTLINRILGEERLLTGPEAGITRDSISLRLDWEGLPVRLFDTAGMRKR 268

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +  D +EK  +      V+ A+++++L
Sbjct: 269 AKVQDKLEKLSVSDGLRAVKFAEVVVVL 296


>gi|66815479|ref|XP_641756.1| hypothetical protein DDB_G0279259 [Dictyostelium discoideum AX4]
 gi|60469791|gb|EAL67778.1| hypothetical protein DDB_G0279259 [Dictyostelium discoideum AX4]
          Length = 841

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 207 ISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDL 264
           +S  KL E ++ G  +I I+G  NAGKSSL N + +++ +IV+DIPGTT D +  + L  
Sbjct: 331 LSLEKLEEDLKPGPIRISIVGQPNAGKSSLLNKIIEEERSIVSDIPGTTHDPVDCNFLWR 390

Query: 265 EGYLVKISDTAGIR 278
           + + + + DTAGIR
Sbjct: 391 DTHELSLIDTAGIR 404



 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 27/169 (15%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           Q  L + I N   I I+G  N GKS++FN + + +  A+V +IPGTTRD    +  L G 
Sbjct: 142 QRVLMKPISNKPVIAIIGKPNVGKSTIFNRIIEGQRRALVEEIPGTTRDRYYGEGFLYGR 201

Query: 268 LVKISDTAGI--RETDDIVEKEGIKRTFLEV--ENADLILLLKEINS------------- 310
              + DT G+     +D  + +G+ +   E+  E AD IL + +  S             
Sbjct: 202 EFILVDTGGLIGESKEDKDQFQGVIQDQAEIAMEEADAILFVLDYKSGLTSIDKELARML 261

Query: 311 ---KKEISFPKNIDFIFIG-TKSDLYSTYTEEYDHLISSFTGEGLEELI 355
              ++++  P     I+IG  K+D  S   E+++ + +  T  G  E I
Sbjct: 262 RSKRQKLGKP-----IYIGVNKADNVSMRGEDFEEMKTQITRLGFGEPI 305


>gi|57505277|ref|ZP_00371206.1| ferrous iron transport protein B [Campylobacter upsaliensis RM3195]
 gi|57016413|gb|EAL53198.1| ferrous iron transport protein B [Campylobacter upsaliensis RM3195]
          Length = 669

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSL NAL K ++  V + PG T +  +  +  + Y ++  D  G    D
Sbjct: 6   IILVGQPNVGKSSLINALCKSNLK-VGNFPGVTVEKASAKIVYKNYTLEFIDLPGTYALD 64

Query: 282 DIVEKEGIKRTFLEVENADLIL-LLKEINSKKEI 314
              E+E I + +++ +N DLI+ +L   N K+ +
Sbjct: 65  GYSEEEKITQNYIKTQNYDLIINILDSTNLKRNL 98


>gi|296393716|ref|YP_003658600.1| ribosome-associated GTPase EngA [Segniliparus rotundus DSM 44985]
 gi|296180863|gb|ADG97769.1| ribosome-associated GTPase EngA [Segniliparus rotundus DSM 44985]
          Length = 450

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N    +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 14  IAIVGRPNVGKSTLVNRFVGRRAAVVEDVPGVTRDRVSYDAEWGGRSFLVQDTGGWEPDA 73

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++  L +  AD+ILL+
Sbjct: 74  TGIGLSIAQQAELAMATADVILLV 97



 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N L+ ++ ++V  + GTT D +   + L+G   +  DTAG+R  
Sbjct: 186 RVALVGRPNVGKSSLINKLSGENRSVVDSVAGTTVDPVDSLIALDGEEWQFVDTAGLRR- 244

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305
             + +  G +     RT   +E A+++++L
Sbjct: 245 -KVGQASGHEFYAAVRTKSAIEAAEVVIVL 273


>gi|291569962|dbj|BAI92234.1| probable small GTP-binding protein [Arthrospira platensis NIES-39]
          Length = 222

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   + ++G  N GKS LFNAL    V  V++ PGTT D+ T D+ +    + I DT G+
Sbjct: 38  NKPTVALVGSPNVGKSVLFNALTSHYVT-VSNYPGTTVDITTGDMIIGDKAIAIIDTPGM 96

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL 303
                I E+E + R  L     DL++
Sbjct: 97  YSLLPITEEEKVGRDLLMTRGIDLVI 122


>gi|238650994|ref|YP_002916850.1| GTP-binding protein EngA [Rickettsia peacockii str. Rustic]
 gi|259645885|sp|C4K2K1|DER_RICPU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238625092|gb|ACR47798.1| GTP-binding protein EngA [Rickettsia peacockii str. Rustic]
          Length = 447

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDENP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + + +  I++T   +  ADLI  +
Sbjct: 66  NSMGERLIEQTTKAILEADLICFM 89



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K+ DTAG+R+ 
Sbjct: 181 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240

Query: 281 DDIVE 285
             I E
Sbjct: 241 STITE 245


>gi|15892953|ref|NP_360667.1| GTP-binding protein EngA [Rickettsia conorii str. Malish 7]
 gi|24636839|sp|Q92GU2|DER_RICCN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|15620147|gb|AAL03568.1| conserved GTP-binding protein [Rickettsia conorii str. Malish 7]
          Length = 447

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDENP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + + +  I++T   +  ADLI  +
Sbjct: 66  NSMGERLIEQTTKAILEADLICFM 89



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K+ DTAG+R+ 
Sbjct: 181 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240

Query: 281 DDIVE 285
             I E
Sbjct: 241 STITE 245


>gi|117926861|ref|YP_867478.1| small GTP-binding protein [Magnetococcus sp. MC-1]
 gi|117610617|gb|ABK46072.1| small GTP-binding protein [Magnetococcus sp. MC-1]
          Length = 495

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           ++ ++G  NAGKSSL N L  ++  + ++I GTTRD + + + D  G  V + DTAGIR 
Sbjct: 213 RLAVVGCPNAGKSSLVNRLVGEERLLASEIAGTTRDSIDVPITDANGETVILVDTAGIRR 272

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +   VEK  +      +E A++ +L+
Sbjct: 273 KSRVSLRVEKFAVIAALKSMERAEVAILV 301



 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD     +        + DT G  E D
Sbjct: 19  VALVGRPNVGKSTLFNRLTRTRDALVDDTPGLTRDRQYGIMKRGDTPFPMVDTGGF-EAD 77

Query: 282 DIVEKEGIKR--TFLEVENADLILLL 305
                  + R  T L +E AD+I+ +
Sbjct: 78  PGETMVSLIRGQTILAIEEADIIVFV 103


>gi|315122134|ref|YP_004062623.1| GTP-binding protein EngA [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495536|gb|ADR52135.1| GTP-binding protein EngA [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 448

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS+L N L   +  ++    GTTRD + I  + + + +KI DTAG+R+ 
Sbjct: 182 RIAVVGRPNVGKSTLINRLLGYNRVLIGPKAGTTRDSIPISWEWKNHPIKIFDTAGMRKP 241

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   VEK+ + ++   +   +  ++L
Sbjct: 242 SRIIEQVEKKSVTKSMQSIRVCETTIVL 269



 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 25/104 (24%)

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVENADLI 302
           +AIV D PG TRD L     + G+   + DTAGI  E    + K+   +T + ++ A L 
Sbjct: 1   MAIVGDCPGMTRDRLYGKAIINGFEFNVIDTAGIENENSHFIAKQTNDQTEIAIDEAHLA 60

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           L L  I+SK  I+                       YDHLI+ F
Sbjct: 61  LFL--IDSKSGIT----------------------PYDHLIAKF 80


>gi|297538000|ref|YP_003673769.1| ferrous iron transport protein B [Methylotenera sp. 301]
 gi|297257347|gb|ADI29192.1| ferrous iron transport protein B [Methylotenera sp. 301]
          Length = 596

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I +LG  N GKS+LFN ++    A V + PG T D+++  + + G++ ++ D  GI + 
Sbjct: 3   RIALLGMPNTGKSTLFNRISGAS-ARVGNWPGITVDLMSAKILIGGHIAELIDLPGIYDL 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
               E E + R FL     DLI++L  +NS +
Sbjct: 62  HGFSEDEQVVRRFLSNNAVDLIIVL--LNSSQ 91


>gi|253795566|ref|YP_003038662.1| putative tRNA modification GTPase TrmE [Candidatus Hodgkinia
           cicadicola Dsem]
 gi|253739874|gb|ACT34209.1| putative tRNA modification GTPase TrmE [Candidatus Hodgkinia
           cicadicola Dsem]
          Length = 383

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 6/146 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G SNAGKSSLFNAL     AIV     TTRDV+++    +G +V   DT G+  T D 
Sbjct: 206 VIGLSNAGKSSLFNALTHDVKAIVHRGKMTTRDVVSVR---KGEVV-FCDTPGLENTADD 261

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKE-ISFPKNIDFIFIGTKSDL-YSTYTEEYDH 341
           VE + +      V+ A++ +++   +     +        +   +K+DL +     + D 
Sbjct: 262 VEAKALAAAKRRVDTANVTVVVWAGDKPPSFVRLSSRSAVVTATSKADLVHKLKPSQADV 321

Query: 342 LISSFTGEGLEELINKIKSILSNKFK 367
             S++T EG+ +L  K++ +  +  K
Sbjct: 322 ATSAYTLEGVTKLERKLRRLCRSVIK 347



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 9/121 (7%)

Query: 17  PSAISIIRLSGPSCFQVCEFICKKKKPFPRK-ASLRYFFGLDGRILD----KGLLIVFPS 71
           P AI I+R++G    +    +  K    P+  A       + G  L+     G++   P+
Sbjct: 30  PCAICIVRITGSGTLRALTKLVSK---LPKAGACAVQKLAIAGEALNDMITTGVVRWQPA 86

Query: 72  PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131
           P S TGED AE    G   VV  ++ +L     ++ A  GEF+RRA  N K+ L + + L
Sbjct: 87  PRSPTGEDYAEVSTVGASWVVESVVSKLLSW-GVKKAARGEFTRRALANNKLALADVKQL 145

Query: 132 A 132
           A
Sbjct: 146 A 146


>gi|228907236|ref|ZP_04071096.1| GTP-binding protein engA [Bacillus thuringiensis IBL 200]
 gi|228852376|gb|EEM97170.1| GTP-binding protein engA [Bacillus thuringiensis IBL 200]
          Length = 436

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NAL  ++  IV++I GTTRD +      +     I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDDQDYVIIDTAGMRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D++L++
Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +  ++  + ++ AD+I+ +
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFM 89


>gi|229016860|ref|ZP_04173788.1| GTP-binding protein engA [Bacillus cereus AH1273]
 gi|229023066|ref|ZP_04179580.1| GTP-binding protein engA [Bacillus cereus AH1272]
 gi|228738212|gb|EEL88694.1| GTP-binding protein engA [Bacillus cereus AH1272]
 gi|228744421|gb|EEL94495.1| GTP-binding protein engA [Bacillus cereus AH1273]
          Length = 436

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NAL  ++  IV++I GTTRD +      +     I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDDQDYVIIDTAGMRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D++L++
Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +  ++  + ++ AD+I+ +
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFM 89


>gi|218896533|ref|YP_002444944.1| ribosome-associated GTPase EngA [Bacillus cereus G9842]
 gi|228900184|ref|ZP_04064416.1| GTP-binding protein engA [Bacillus thuringiensis IBL 4222]
 gi|228938715|ref|ZP_04101319.1| GTP-binding protein engA [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228964578|ref|ZP_04125687.1| GTP-binding protein engA [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228971597|ref|ZP_04132220.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978207|ref|ZP_04138584.1| GTP-binding protein engA [Bacillus thuringiensis Bt407]
 gi|226741129|sp|B7IP82|DER_BACC2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|218545843|gb|ACK98237.1| ribosome-associated GTPase EngA [Bacillus cereus G9842]
 gi|228781224|gb|EEM29425.1| GTP-binding protein engA [Bacillus thuringiensis Bt407]
 gi|228788120|gb|EEM36076.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228795112|gb|EEM42609.1| GTP-binding protein engA [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228820956|gb|EEM66977.1| GTP-binding protein engA [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228859454|gb|EEN03882.1| GTP-binding protein engA [Bacillus thuringiensis IBL 4222]
 gi|326939221|gb|AEA15117.1| GTP-binding protein EngA [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 436

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NAL  ++  IV++I GTTRD +      +     I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDDQDYVIIDTAGMRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D++L++
Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +  ++  + ++ AD+I+ +
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFM 89


>gi|163939419|ref|YP_001644303.1| GTP-binding protein EngA [Bacillus weihenstephanensis KBAB4]
 gi|229010911|ref|ZP_04168107.1| GTP-binding protein engA [Bacillus mycoides DSM 2048]
 gi|229058239|ref|ZP_04196627.1| GTP-binding protein engA [Bacillus cereus AH603]
 gi|229132411|ref|ZP_04261265.1| GTP-binding protein engA [Bacillus cereus BDRD-ST196]
 gi|229166450|ref|ZP_04294206.1| GTP-binding protein engA [Bacillus cereus AH621]
 gi|229710726|sp|A9VMB3|DER_BACWK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|163861616|gb|ABY42675.1| small GTP-binding protein [Bacillus weihenstephanensis KBAB4]
 gi|228617024|gb|EEK74093.1| GTP-binding protein engA [Bacillus cereus AH621]
 gi|228651117|gb|EEL07098.1| GTP-binding protein engA [Bacillus cereus BDRD-ST196]
 gi|228720103|gb|EEL71687.1| GTP-binding protein engA [Bacillus cereus AH603]
 gi|228750311|gb|EEM00141.1| GTP-binding protein engA [Bacillus mycoides DSM 2048]
          Length = 436

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NAL  ++  IV++I GTTRD +      +     I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDDQDYVIIDTAGMRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +E +D++L++
Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +  ++  + ++ AD+I+ +
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFM 89


>gi|297205894|ref|ZP_06923289.1| ribosome-associated GTPase EngA [Lactobacillus jensenii JV-V16]
 gi|297149020|gb|EFH29318.1| ribosome-associated GTPase EngA [Lactobacillus jensenii JV-V16]
          Length = 439

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD         G+   I DT GI    
Sbjct: 9   VAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGGITWEG 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
             +E E   +  + +E AD+I+++  +
Sbjct: 69  GRIEDEIRAQADIAMEEADVIVMITSV 95



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 30/180 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDD 282
           ++G  N GKSS+ NA+  +   IV +  GTTRD +      E G   ++ DTAGIR    
Sbjct: 182 VIGRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVDTPFVAEDGTKFRMIDTAGIRRRGK 241

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNI--DFIFIGTKSDL 331
           +    EK  + R    ++ +D++ L+ + ++      K    F  +     I +  K DL
Sbjct: 242 VYEKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQDKHVAGFAHDAGRGMIIVVNKWDL 301

Query: 332 -----------YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                           EE+ +L       +S+ TG+ L++L + IK +  N+ +++  S+
Sbjct: 302 PKKDSNSAKDFTRVIREEFQYLDYAPIIFVSAKTGKNLDQLPDLIKEVAENQSQRIQSSV 361


>gi|227495416|ref|ZP_03925732.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces
           coleocanis DSM 15436]
 gi|226830963|gb|EEH63346.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces
           coleocanis DSM 15436]
          Length = 727

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N LA  D  +V D+ GTTRD +   ++++G      DTAG+R  
Sbjct: 468 RIALIGRPNVGKSSLLNQLAGSDRVVVNDLAGTTRDPVDELIEIDGRPWWFVDTAGVRRK 527

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSK 311
             +    G       RT   +E A+L L+L + + K
Sbjct: 528 --MHRTTGADYYASIRTQAALEKAELALVLLDASEK 561



 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 42/84 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N + ++  A+V D PG TRD ++      G    + DT G     
Sbjct: 294 LAIIGRPNVGKSTLVNRILERRAAVVQDTPGVTRDRVSYPAQWAGRDFTLVDTGGWEMDV 353

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++K    +  + +E AD ++ +
Sbjct: 354 KGLDKSVADQAEIAIEMADAVIFV 377


>gi|213621470|ref|ZP_03374253.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 146

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 18/146 (12%)

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS------ 315
           + ++G  + I DTAG+R+ +D VE+ GI+R + E+E AD +L + +  +   +       
Sbjct: 2   IHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWP 61

Query: 316 -----FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIKSILSN 364
                 PKN+    +  K+D+       +E   H    +S+ TGEG++ L N +K  +  
Sbjct: 62  DFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGF 121

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYL 390
               +     + +RHL  L++   +L
Sbjct: 122 D-TNMEGGFLARRRHLQALAEAANHL 146


>gi|329766983|ref|ZP_08258511.1| GTP-binding protein Era [Gemella haemolysans M341]
 gi|328837708|gb|EGF87333.1| GTP-binding protein Era [Gemella haemolysans M341]
          Length = 302

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 24/197 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKIS 272
           E I+ G+ + I+G  NAGKS+L N + ++ +AI++D P TTR+++  +  D +  +V I 
Sbjct: 4   EQIKTGF-VTIIGRPNAGKSTLLNNILQQKIAIMSDKPQTTRNIINGVYTDNDSQIVFI- 61

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP--- 317
           DT GI +    +    +K     ++ ++++ L+              IN  KE+  P   
Sbjct: 62  DTPGIHKPKHRLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFL 121

Query: 318 --KNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371
               ID I       +   Y + YD +    IS+     ++ L+N  K  L   FK  P 
Sbjct: 122 LINKIDLISPEQLIQIIEFYKDLYDFVEIVPISALKSINVDNLLNTTKKYLQPSFKMYPD 181

Query: 372 SIPSHKRHLYHLSQTVR 388
            + +     + +S+ +R
Sbjct: 182 DVITDSPEYFVISEFIR 198


>gi|298505484|gb|ADI84207.1| ferrous iron transport protein B [Geobacter sulfurreducens KN400]
          Length = 663

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GKS LFNAL    VA V++ PGT+ +V       EG   +I DT G+   
Sbjct: 23  KVALVGNPNVGKSVLFNALTGAYVA-VSNYPGTSVEVSRGAASFEGGSWEIIDTPGMYSI 81

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
             I E+E + R  L  E  D++L
Sbjct: 82  LPITEEERVAREILLTERPDVVL 104


>gi|169827483|ref|YP_001697641.1| GTP-binding protein [Lysinibacillus sphaericus C3-41]
 gi|168991971|gb|ACA39511.1| GTP-binding protein [Lysinibacillus sphaericus C3-41]
          Length = 211

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++  ++  + +E AD+I+ +
Sbjct: 66  EPFLEQIRQQAEIAIEEADVIIFM 89


>gi|20093476|ref|NP_613323.1| small, Ras-like GTPase [Methanopyrus kandleri AV19]
 gi|19886302|gb|AAM01253.1| Small, Ras-like GTPase [Methanopyrus kandleri AV19]
          Length = 196

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 23/179 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E+    ++I +LG  NAGKS+L NAL  ++V  V+++PGTT+ V         + + + D
Sbjct: 11  ELDSRAFRIAVLGPENAGKSTLVNALMGREVTEVSEVPGTTKTVSGYRWTSREFPLYVFD 70

Query: 274 TAGIRE-----------TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322
           T G+ +            +D+ EK G     L V +    +  + + +   I +  +++ 
Sbjct: 71  TVGLADERGKRSKRGVRAEDVAEKLGRYDLALFVVDVTRHVGPETLRALHVIKYAADLET 130

Query: 323 IFIGTKSDLY------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           + +  K DL                T      +S+ TGEG+  L+ +I+  +  K + L
Sbjct: 131 LLVANKIDLLDRGELEERLERIRERTGHRPIPVSALTGEGIGRLLREIERRVREKRRTL 189


>gi|254511655|ref|ZP_05123722.1| GTP-binding protein EngA [Rhodobacteraceae bacterium KLH11]
 gi|221535366|gb|EEE38354.1| GTP-binding protein EngA [Rhodobacteraceae bacterium KLH11]
          Length = 487

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ + T
Sbjct: 5   LAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEGRLGDLRFTVIDTAGLEDAT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DD ++    + T   V+ AD+ L +
Sbjct: 65  DDSLQSRMRRLTERAVDMADVCLFM 89



 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL---EG--YLVKISDTA 275
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D    EG    ++I DTA
Sbjct: 199 QVAVVGRPNAGKSTLINKIMGEDRLLTGPEAGITRDAISLRVDWADPEGGSTPMRIFDTA 258

Query: 276 GIRETDDIVEK 286
           G+R+   + EK
Sbjct: 259 GMRKKAKVQEK 269


>gi|116333425|ref|YP_794952.1| GTP-binding protein EngA [Lactobacillus brevis ATCC 367]
 gi|122269888|sp|Q03SA1|DER_LACBA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|116098772|gb|ABJ63921.1| Predicted GTPase [Lactobacillus brevis ATCC 367]
          Length = 435

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D PG TRD +    +  G   ++ DT GI   D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYSRAEWLGTEFRMIDTGGIDMGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +  ++  + ++ AD+I+ +
Sbjct: 66  EPFLTQITQQAEIAIDEADVIVFI 89



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  ++  IV++I GTTRD +      +     + DTAGIR+   +
Sbjct: 179 LIGRPNVGKSSLVNAMLGEERVIVSNIAGTTRDAIDTKFVADDTKFTMVDTAGIRKRGKV 238

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E+  + R    ++++D++L++
Sbjct: 239 YENTERYSVMRAMRAIDDSDVVLVV 263


>gi|221505263|gb|EEE30917.1| GTP-binding protein engA, putative [Toxoplasma gondii VEG]
          Length = 1105

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 22/154 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + I+G  N GKS+L N+L +++  +V + PGTT D +      +G+  ++ DTAG+    
Sbjct: 793 VAIIGRPNVGKSTLVNSLLQEERMVVDNRPGTTTDAVGTLWKFQGHPFRLIDTAGVTRGW 852

Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335
             R TD ++E  G++ T   + N+ + +L  + +  ++   P               S++
Sbjct: 853 KMRHTDLLLEA-GLQ-TLRNIRNSQVCILCIDASLARDTGQP--------------ISSH 896

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                HL S   G  L   + K   +  N+ +KL
Sbjct: 897 ELALAHLASEKEGRCLAVCVTKWDLVPENEREKL 930



 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+V++G  N GKSSLFN L    + IV+   GT+RD         G  + + DT G+ +T
Sbjct: 252 KVVLVGRPNVGKSSLFNRL----ITIVSPQAGTSRDRKEARAVFGGLQLLLVDTGGLEDT 307

Query: 281 DDIVEKEGI----KRTFLEVENADLILLL 305
           +     E +    K+    +++AD +L L
Sbjct: 308 ETTEACELLINMRKQVRFALKDADCVLFL 336


>gi|295839702|ref|ZP_06826635.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB74]
 gi|295827618|gb|EFG65509.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB74]
          Length = 488

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N LA +D  +V +  GTTRD +   ++L G   K  DTAGIR+
Sbjct: 227 RVALIGRPNVGKSSLLNKLAGEDRVVVNEQAGTTRDPVDELIELGGVTWKFVDTAGIRK 285



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           F   D+   I +   G + R    + ++G  N GKS+L N +  +  A+V D PG TRD 
Sbjct: 32  FDVEDVEDAIGEAGHGPLPR----LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDR 87

Query: 258 LTIDLDLEGYLVKISDTAG 276
           +T + +  G   K+ DT G
Sbjct: 88  VTYEAEWAGRRFKLVDTGG 106


>gi|113955090|ref|YP_729987.1| GTP-binding protein Era [Synechococcus sp. CC9311]
 gi|113882441|gb|ABI47399.1| GTP-binding protein Era [Synechococcus sp. CC9311]
          Length = 317

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 26/206 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L    +AI + +  TTR+ L   L  +   + + DT G
Sbjct: 18  RSGF-VALIGRPNVGKSTLVNQLIGDKIAITSPVAQTTRNRLRAILTTDEAQLILVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNI---- 320
           I +   ++ +  ++     +   D +LLL E            +   ++ S P  +    
Sbjct: 77  IHKPHHLLGERLVRTARSAIGEVDQVLLLLEGCEAPGRGDAFIVQLLRQQSLPVQVLLNK 136

Query: 321 -DFIFIGTKSDLYSTYTE---EYD---HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            D + +  K    + Y E   E D   H  S+ +G+G  EL+  I S++    +  P  +
Sbjct: 137 WDLVPLEQKDAADAAYRELLSETDWPVHRCSALSGDGCPELVKAISSLMPEGPQLYPSDM 196

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKD 399
            S +     + + +R  E   LN ++
Sbjct: 197 VSDQPERLLMGELIR--EQVLLNTRE 220


>gi|323356705|ref|YP_004223101.1| GTPase [Microbacterium testaceum StLB037]
 gi|323273076|dbj|BAJ73221.1| predicted GTPase [Microbacterium testaceum StLB037]
          Length = 507

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ILG  N GKSSL N  A ++  +V ++ GTTRD +   ++L G L  + DTAGIR
Sbjct: 242 RVAILGRPNVGKSSLLNKAAGEERVVVNELAGTTRDPVDEVVELGGKLWTLVDTAGIR 299



 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 42/84 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD +T   +       + DT G     
Sbjct: 69  VAIVGRPNVGKSALVNRILGRREAVVEDTPGVTRDRVTYKAEWLDRRFSLVDTGGWEPDA 128

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++    +  + ++ AD++L +
Sbjct: 129 KGIDRSVAAQAEVAIDLADVVLFV 152


>gi|332982748|ref|YP_004464189.1| iron-only hydrogenase maturation protein HydF [Mahella
           australiensis 50-1 BON]
 gi|332700426|gb|AEE97367.1| iron-only hydrogenase maturation protein HydF [Mahella
           australiensis 50-1 BON]
          Length = 413

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 24/154 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  NAGKSS+ NA+  +  A+V+D+ GTT D ++  ++L     V I DTAG+ + 
Sbjct: 15  IAIFGRRNAGKSSIINAITNQKAALVSDVAGTTTDPVSKAMELLPIGPVVIIDTAGLDDI 74

Query: 281 DDIVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIGTKSDL 331
             + E   I+RT+  +   DL +L+          E N  + I   KNI  +    K+D 
Sbjct: 75  GPLGEMR-IQRTYDVLNRTDLAVLVIDGEVGLTDFEENILRRIR-EKNIPVVGAVNKAD- 131

Query: 332 YSTYTE----EYDHL-------ISSFTGEGLEEL 354
            + YT+    E++         +S+ TG+G++EL
Sbjct: 132 KAVYTQEQLKEWEKKLKLELVEVSAATGQGIDEL 165


>gi|315639240|ref|ZP_07894402.1| ferrous iron transport protein B [Campylobacter upsaliensis JV21]
 gi|315480566|gb|EFU71208.1| ferrous iron transport protein B [Campylobacter upsaliensis JV21]
          Length = 669

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSL NAL K ++  V + PG T +  +  +  + Y ++  D  G    D
Sbjct: 6   IILVGQPNVGKSSLINALCKSNLK-VGNFPGVTVEKASAKIVYKNYTLEFIDLPGTYALD 64

Query: 282 DIVEKEGIKRTFLEVENADLIL-LLKEINSKK 312
              E+E I + +++ +N DLI+ +L   N K+
Sbjct: 65  GYSEEEKITQNYIKTQNYDLIINILDSTNLKR 96


>gi|312890130|ref|ZP_07749673.1| GTP-binding protein Era [Mucilaginibacter paludis DSM 18603]
 gi|311297407|gb|EFQ74533.1| GTP-binding protein Era [Mucilaginibacter paludis DSM 18603]
          Length = 292

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 1/95 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  NAGKS+L NAL  + ++I+T    TTR  +   ++ E Y +  SDT G
Sbjct: 4   RAGF-VSIIGKPNAGKSTLMNALVGEKMSIITPKAQTTRHRILGIVNEEDYQIVFSDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           I +    +++  + +    + +AD++LL+ +IN K
Sbjct: 63  IIKPHYALQETMMHQVSGSLVDADMVLLVTDINEK 97


>gi|182416887|ref|ZP_02948272.1| GTP-binding protein [Clostridium butyricum 5521]
 gi|237669589|ref|ZP_04529568.1| GTP-binding protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379260|gb|EDT76760.1| GTP-binding protein [Clostridium butyricum 5521]
 gi|237654905|gb|EEP52466.1| GTP-binding protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 400

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 4/96 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTA 275
           N   I I G  NAGKSSL NAL  + +++V++IPGTT D ++  ++L   G +V I DTA
Sbjct: 8   NRLHISIFGKRNAGKSSLINALTNQSLSVVSEIPGTTTDPVSKSMELLPLGPIVLI-DTA 66

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           G+ ++  + E   I++T   +E  DL +L+ +  SK
Sbjct: 67  GLDDSGLLGELR-IEKTLKVIEKTDLGVLVFDACSK 101


>gi|148273155|ref|YP_001222716.1| GTP-binding protein EngA [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831085|emb|CAN02030.1| putative GTP-binding protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 502

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ILG  N GKSSL N  A ++  +V ++ GTTRD +   +++ G + +  DTAGIR
Sbjct: 243 RVAILGRPNVGKSSLLNKAAGEERVVVNELAGTTRDPVDEQVEIAGKVWRFVDTAGIR 300



 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G
Sbjct: 70  LAVVGRPNVGKSALINRILGRREAVVEDTPGVTRDRVSYKAEHAGRWFTLVDTGG 124


>gi|318061403|ref|ZP_07980124.1| GTP-binding protein Der [Streptomyces sp. SA3_actG]
 gi|318078001|ref|ZP_07985333.1| GTP-binding protein Der [Streptomyces sp. SA3_actF]
          Length = 488

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N LA +D  +V +  GTTRD +   ++L G   K  DTAGIR+
Sbjct: 227 RVALIGRPNVGKSSLLNKLAGEDRVVVNEQAGTTRDPVDELIELGGVTWKFVDTAGIRK 285



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           F   D+   I +   G + R    + ++G  N GKS+L N +  +  A+V D PG TRD 
Sbjct: 32  FDVEDVEDAIGEAGHGPLPR----LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDR 87

Query: 258 LTIDLDLEGYLVKISDTAG 276
           +T + +  G   K+ DT G
Sbjct: 88  VTYEAEWAGRRFKLVDTGG 106


>gi|320011615|gb|ADW06465.1| ribosome-associated GTPase EngA [Streptomyces flavogriseus ATCC
           33331]
          Length = 489

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           +I ++G  N GKSSL N +A +D  +V ++ GTTRD +   ++L G   K  DTAGIR
Sbjct: 228 RIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELINLGGITWKFIDTAGIR 285



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD ++ + +  G   K+ DT G
Sbjct: 54  LAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGG 108


>gi|46205398|ref|ZP_00048589.2| COG1160: Predicted GTPases [Magnetospirillum magnetotacticum MS-1]
          Length = 135

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 35/60 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  + +A+V D PG TRD    D  +     +I DTAG+ E D
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGDGSIGDVTFRIIDTAGLEEAD 65


>gi|218282280|ref|ZP_03488579.1| hypothetical protein EUBIFOR_01161 [Eubacterium biforme DSM 3989]
 gi|218216748|gb|EEC90286.1| hypothetical protein EUBIFOR_01161 [Eubacterium biforme DSM 3989]
          Length = 319

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 8/97 (8%)

Query: 214 EIIRNGYK--------IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           +II NG K        I I+G  NAGKS+L NAL K+ +AI++D P TTR+ ++  L  E
Sbjct: 10  QIILNGGKMKNYKSGFIAIVGRPNAGKSTLLNALLKEKIAIMSDKPNTTRNNISGILTHE 69

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
                  DT GI +    + +   K  +  +E+ D+I
Sbjct: 70  DCQYVFVDTPGIHKPQQQLGRVLNKNAYSAMEDCDVI 106


>gi|85703427|ref|ZP_01034531.1| GTP-binding protein EngA [Roseovarius sp. 217]
 gi|85672355|gb|EAQ27212.1| GTP-binding protein EngA [Roseovarius sp. 217]
          Length = 487

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V + PG TRD+      L      + DTAG+ E
Sbjct: 3   FSLAIVGRPNVGKSTLFNRLVGKRLALVDNQPGVTRDLREGAARLGDLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TD+ ++    K T   V+ AD+ L L
Sbjct: 63  ATDESLQGRMRKLTERAVDMADVCLFL 89



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N +  ++  +     G TRD +++ +D +G  V+I DTAG+R+ 
Sbjct: 202 QVAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLQIDWDGLPVRIFDTAGMRKK 261

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305
               D +EK  +      V+ A+++++L
Sbjct: 262 ARIQDKLEKLSVSDGLRAVKFAEVVVVL 289


>gi|110004318|emb|CAK98656.1| putative gtp-binding protein enga [Spiroplasma citri]
          Length = 438

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G    ++G  N GKSSL NA+  ++  IV+ I GTT D +         L  + DTAGIR
Sbjct: 176 GIHFSLIGKPNVGKSSLTNAILGEERVIVSPIAGTTTDSIDTSFKRNNQLYTVIDTAGIR 235

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305
               +   +EK  + R    ++ +DL+LL+
Sbjct: 236 RKGKVYEKLEKYSVLRAVSAIKRSDLVLLI 265



 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + I+G  N GKS+LFN + K  +AIV D PG TRD
Sbjct: 7   VAIVGRPNVGKSTLFNRIIKNRLAIVEDTPGVTRD 41


>gi|167041994|gb|ABZ06731.1| putative GTPase of unknown function [uncultured marine
           microorganism HF4000_141E02]
          Length = 332

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 37/223 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R+GY + ++G  N GKS+L NAL  + V+IVT  P TT+ ++L I + L    + + DT 
Sbjct: 52  RSGY-VAVIGRPNVGKSTLVNALVGEKVSIVTSKPQTTQINILGI-VHLPHAQIMLVDTP 109

Query: 276 GIR--ETDDIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFPK------NIDFIFIG 326
           G+       +  K+  K T   +  ADL +++ E+N  KKE  +        N + I   
Sbjct: 110 GLLSGRGKRLSSKQTRKETRNALAMADLAVVVVEVNRWKKEDDYLMERLGEFNFEKILAV 169

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEEL----------INKIKSILSNKFKKLPFSIP-- 374
            K DL+   ++  D L  S T    +E+          I +++S++      LPF  P  
Sbjct: 170 NKIDLFKDKSQILDFLAQSSTKGSFKEIVPISALRDKNITRLRSLME---ANLPFQTPQF 226

Query: 375 -----SHKRHLYHLSQTVRYLEMASLNEK-----DCGLDIIAE 407
                + +  ++ +S+ VR   M  L ++      C +D + E
Sbjct: 227 SKTTVTDQSTVFRISEIVREKLMKCLRDELPYSLTCEVDHMEE 269


>gi|239948355|ref|ZP_04700108.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922631|gb|EER22655.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 567

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E  
Sbjct: 283 VCIIGRPNSGKSTLLNIIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 342

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +EK  ++  +  + +ADL+LL+
Sbjct: 343 GTLEKAMVRCAWSSLHSADLVLLI 366


>gi|302546520|ref|ZP_07298862.1| ribosome-associated GTPase EngA [Streptomyces hygroscopicus ATCC
           53653]
 gi|302464138|gb|EFL27231.1| ribosome-associated GTPase EngA [Streptomyces himastatinicus ATCC
           53653]
          Length = 487

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            G  +    +I ++G  N GKSSL N +A ++  +V ++ GTTRD +   ++L G   K 
Sbjct: 217 FGATVGGPRRIALIGRPNVGKSSLLNKVAGEERVVVNEVAGTTRDPVDELIELGGITWKF 276

Query: 272 SDTAGIR 278
            DTAGIR
Sbjct: 277 VDTAGIR 283



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G  +  
Sbjct: 52  LAVVGRPNVGKSTLVNRVLGRREAVVEDKPGVTRDRVTYEAEWSGRRFKVVDTGGWEQDV 111

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     +    +E AD ++ +
Sbjct: 112 LGIDASVAAQAEFAIEAADAVVFV 135


>gi|242373782|ref|ZP_04819356.1| GTP-binding protein EngA [Staphylococcus epidermidis M23864:W1]
 gi|242348519|gb|EES40121.1| GTP-binding protein EngA [Staphylococcus epidermidis M23864:W1]
          Length = 436

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD +  +   E     + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYTYEDQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + ++ AD+I+ +
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFM 89


>gi|222055249|ref|YP_002537611.1| small GTP-binding protein [Geobacter sp. FRC-32]
 gi|254783155|sp|B9M914|DER_GEOSF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|221564538|gb|ACM20510.1| small GTP-binding protein [Geobacter sp. FRC-32]
          Length = 441

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L  +  A+V D+PG TRD    D++       + DT G   ET
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYADVNRFDVPFILIDTGGFEPET 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D + ++  +++ L ++ ADLIL +
Sbjct: 65  SDRLLQQMREQSQLAMDEADLILFV 89



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I ++G  N GKS+L N L   +  +    PGTTRD +    +       + DTAGIR  
Sbjct: 177 RIAVIGRPNVGKSTLVNRLLGVERVVANPTPGTTRDSIDTYFNCNKKRYLLIDTAGIRRK 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +T + +EK  +  +   +E AD++L++
Sbjct: 237 GKTTEKIEKYSVVDSLRSIERADVVLIV 264


>gi|330994712|ref|ZP_08318635.1| GTPase Der [Gluconacetobacter sp. SXCC-1]
 gi|329758353|gb|EGG74874.1| GTPase Der [Gluconacetobacter sp. SXCC-1]
          Length = 467

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           +VI G  N GKS++FN L  +  A+V D PG TRD       + G  ++I DTAG+ E  
Sbjct: 7   VVIAGRPNVGKSTIFNRLVGRRQALVADTPGVTRDRKEGQATVRGRNIRIIDTAGLEEAA 66

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
            D +       +   V +ADL+L
Sbjct: 67  PDTLYGRMRASSESAVAHADLVL 89



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N L  ++  I    PG TRD + + L  +   +++ DTAG+R  
Sbjct: 202 RLAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSIAVMLSDDEGPIQLVDTAGLRRK 261

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305
              D+ +EK  +  +   ++ A++++L+
Sbjct: 262 ARIDETLEKMSVSASIEALKMAEVVILV 289


>gi|328955535|ref|YP_004372868.1| iron-only hydrogenase maturation protein HydF [Coriobacterium
           glomerans PW2]
 gi|328455859|gb|AEB07053.1| iron-only hydrogenase maturation protein HydF [Coriobacterium
           glomerans PW2]
          Length = 422

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 40/193 (20%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKSSL NA+  +D+A+V+D PGTT D +   ++L     V I DT G
Sbjct: 12  NRVHIGFFGRRNAGKSSLVNAVTGQDLAVVSDTPGTTTDPVYKSMELLPLGPVVIIDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
             +T ++ E   +K+T   +   D+ +L+ +  S          E+   + +  + I  K
Sbjct: 72  FDDTGELGELR-VKKTRQVLNKCDIAILVYDAASGVTAADRQLLELIRDRGLPHLIIANK 130

Query: 329 SDLYSTYTEEYDH---------------------LISSFTGEGLEELINKIKSILSNKFK 367
           SD  +   +                          +S+ +G+G+ EL  +I ++      
Sbjct: 131 SDRGAAAGDSATAGPDAATASSASAAAPTDNEALCVSALSGQGIHELKERIGALAGTD-- 188

Query: 368 KLPFSIPSHKRHL 380
                   H+RHL
Sbjct: 189 -------RHERHL 194


>gi|302518233|ref|ZP_07270575.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB78]
 gi|302427128|gb|EFK98943.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB78]
          Length = 488

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N LA +D  +V +  GTTRD +   ++L G   K  DTAGIR+
Sbjct: 227 RVALIGRPNVGKSSLLNKLAGEDRVVVNEQAGTTRDPVDELIELGGVTWKFVDTAGIRK 285



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           F   D+   I +   G + R    + ++G  N GKS+L N +  +  A+V D PG TRD 
Sbjct: 32  FDVEDVEDAIGEAGHGPLPR----LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDR 87

Query: 258 LTIDLDLEGYLVKISDTAG 276
           +T + +  G   K+ DT G
Sbjct: 88  VTYEAEWAGRRFKLVDTGG 106


>gi|227551166|ref|ZP_03981215.1| GTP-binding protein EngA [Enterococcus faecium TX1330]
 gi|257896210|ref|ZP_05675863.1| GTP-binding protein engA [Enterococcus faecium Com12]
 gi|293379548|ref|ZP_06625690.1| ribosome-associated GTPase EngA [Enterococcus faecium PC4.1]
 gi|293570249|ref|ZP_06681318.1| GTP-binding protein EngA [Enterococcus faecium E980]
 gi|227179728|gb|EEI60700.1| GTP-binding protein EngA [Enterococcus faecium TX1330]
 gi|257832775|gb|EEV59196.1| GTP-binding protein engA [Enterococcus faecium Com12]
 gi|291609656|gb|EFF38917.1| GTP-binding protein EngA [Enterococcus faecium E980]
 gi|292641857|gb|EFF60025.1| ribosome-associated GTPase EngA [Enterococcus faecium PC4.1]
          Length = 436

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      E G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    ++ +D++L++
Sbjct: 236 RGKVYENTEKYSVMRAMRAIDRSDIVLMV 264



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + +E AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIEEADVIICV 89


>gi|154498134|ref|ZP_02036512.1| hypothetical protein BACCAP_02115 [Bacteroides capillosus ATCC
           29799]
 gi|150273124|gb|EDN00281.1| hypothetical protein BACCAP_02115 [Bacteroides capillosus ATCC
           29799]
          Length = 441

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ ++G  N GKSSL N +  ++  IV+++ GTTRD +    + +     + DTAG+R  
Sbjct: 178 KVAVIGKPNVGKSSLINRILGEERVIVSNMAGTTRDAIDSYYENDKGKYILIDTAGMRKK 237

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            + DD +EK  + R  + +E  D+ L++
Sbjct: 238 SKVDDRIEKFSVLRATMAIERCDVCLIM 265



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS LFN L  + ++IV D PG TRD +  + +       I DT GI   T
Sbjct: 5   VAIVGRPNVGKSMLFNRLVGQRLSIVEDTPGVTRDRIYAECEWRNRKFDIVDTGGIEPNT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           D  +     ++  + + NAD+ + + +I S
Sbjct: 65  DSEILSFMREQAEIAIRNADVTVFVCDIKS 94


>gi|37522779|ref|NP_926156.1| GTP-binding protein EngA [Gloeobacter violaceus PCC 7421]
 gi|41017005|sp|Q7NGF9|DER_GLOVI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|35213781|dbj|BAC91151.1| gll3210 [Gloeobacter violaceus PCC 7421]
          Length = 455

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G  N GKS+L N LA    AIV D PG TRD L +  +  GY  ++ DT G+
Sbjct: 6   VAIIGRPNVGKSTLLNRLAGGSEAIVYDQPGVTRDRLYLPAEWCGYRFEVVDTGGL 61



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 221 KIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ I+G  N GKSSL NAL   +   ++V+++ GTTRD +   ++      ++ DTAGIR
Sbjct: 179 RVSIVGRPNVGKSSLLNALVGGEHPRSMVSEVAGTTRDAIDTLVEHGERRYRLIDTAGIR 238

Query: 279 ETDDI---VEKEGIKRTFLEVENAD 300
               +    E  G+ R    +  AD
Sbjct: 239 RKSRVDYGPEAFGVTRAIRAIRRAD 263


>gi|333028090|ref|ZP_08456154.1| putative GTP-binding protein EngA [Streptomyces sp. Tu6071]
 gi|332747942|gb|EGJ78383.1| putative GTP-binding protein EngA [Streptomyces sp. Tu6071]
          Length = 488

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N LA +D  +V +  GTTRD +   ++L G   K  DTAGIR+
Sbjct: 227 RVALIGRPNVGKSSLLNKLAGEDRVVVNEQAGTTRDPVDELIELGGVTWKFVDTAGIRK 285



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           F   D+   I +   G + R    + ++G  N GKS+L N +  +  A+V D PG TRD 
Sbjct: 32  FDVEDVEDAIGEAGHGPLPR----LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDR 87

Query: 258 LTIDLDLEGYLVKISDTAG 276
           +T + +  G   K+ DT G
Sbjct: 88  VTYEAEWAGRRFKLVDTGG 106


>gi|221483987|gb|EEE22291.1| GTP-binding protein enga, putative [Toxoplasma gondii GT1]
          Length = 1125

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 22/154 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + I+G  N GKS+L N+L +++  +V + PGTT D +      +G+  ++ DTAG+    
Sbjct: 813 VAIIGRPNVGKSTLVNSLLQEERMVVDNRPGTTTDAVGTLWRFQGHPFRLIDTAGVTRGW 872

Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335
             R TD ++E  G++ T   + N+ + +L  + +  ++   P               S++
Sbjct: 873 KMRHTDLLLEA-GLQ-TLRNIRNSQVCILCIDASLARDTGQP--------------ISSH 916

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                HL S   G  L   + K   +  N+ +KL
Sbjct: 917 ELALAHLASEKEGRCLAVCVTKWDLVPENEREKL 950



 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 20/105 (19%)

Query: 221 KIVILGHSNAGKSSLFN----------------ALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           K+V++G  N GKSSLFN                 L +   AIV+   GT+RD        
Sbjct: 252 KVVLVGRPNVGKSSLFNRLISGTRGNSTSSPFAPLKRLQQAIVSPQAGTSRDRKEARAVF 311

Query: 265 EGYLVKISDTAGIRETDDIVEKEGI----KRTFLEVENADLILLL 305
            G  + + DT G+ +T+     E +    K+    +++AD +L L
Sbjct: 312 GGLQLLLVDTGGLEDTETTEACELLINMRKQVRFALKDADCVLFL 356


>gi|237836573|ref|XP_002367584.1| small GTP-binding protein, putative [Toxoplasma gondii ME49]
 gi|211965248|gb|EEB00444.1| small GTP-binding protein, putative [Toxoplasma gondii ME49]
          Length = 1105

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 22/154 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + I+G  N GKS+L N+L +++  +V + PGTT D +      +G+  ++ DTAG+    
Sbjct: 793 VAIIGRPNVGKSTLVNSLLQEERMVVDNRPGTTTDAVGTLWRFQGHPFRLIDTAGVTRGW 852

Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335
             R TD ++E  G++ T   + N+ + +L  + +  ++   P               S++
Sbjct: 853 KMRHTDLLLEA-GLQ-TLRNIRNSQVCILCIDASLARDTGQP--------------ISSH 896

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                HL S   G  L   + K   +  N+ +KL
Sbjct: 897 ELALAHLASEKEGRCLAVCVTKWDLVPENEREKL 930



 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+V++G  N GKSSLFN L    + IV+   GT+RD         G  + + DT G+ +T
Sbjct: 252 KVVLVGRPNVGKSSLFNRL----ITIVSPQAGTSRDRKEARAVFGGLQLLLVDTGGLEDT 307

Query: 281 DDIVEKEGI----KRTFLEVENADLILLL 305
           +     E +    K+    +++AD +L L
Sbjct: 308 ETTEACELLINMRKQVRFALKDADCVLFL 336


>gi|257887716|ref|ZP_05667369.1| GTP-binding protein engA [Enterococcus faecium 1,141,733]
 gi|257823770|gb|EEV50702.1| GTP-binding protein engA [Enterococcus faecium 1,141,733]
          Length = 436

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      E G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    ++ +D++L++
Sbjct: 236 RGKVYENTEKYSVMRAMRAIDRSDIVLMV 264



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + +E AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIEEADVIICV 89


>gi|293568055|ref|ZP_06679393.1| GTP-binding protein EngA [Enterococcus faecium E1071]
 gi|291589276|gb|EFF21086.1| GTP-binding protein EngA [Enterococcus faecium E1071]
          Length = 436

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      E G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    ++ +D++L++
Sbjct: 236 RGKVYENTEKYSVMRAMRAIDRSDIVLMV 264



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + +E AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIEEADVIICV 89


>gi|266624277|ref|ZP_06117212.1| GTP-binding protein EngA [Clostridium hathewayi DSM 13479]
 gi|288863885|gb|EFC96183.1| GTP-binding protein EngA [Clostridium hathewayi DSM 13479]
          Length = 189

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA   ++IV D PG TRD +  D         + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGDTISIVKDTPGVTRDRIYADCTWLDKNFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308
            DI+  +  ++  + +  AD+I+ + ++
Sbjct: 66  SDIILSQMREQAEIAIATADVIVFIVDV 93


>gi|300781237|ref|ZP_07091091.1| ribosome-associated GTPase EngA [Corynebacterium genitalium ATCC
           33030]
 gi|300532944|gb|EFK54005.1| ribosome-associated GTPase EngA [Corynebacterium genitalium ATCC
           33030]
          Length = 506

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 31/178 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N L++ D A+V ++ GTT D +   + L+  L +  DTAG+R+ 
Sbjct: 246 RVALVGKPNVGKSSLLNKLSRADRAVVDNVAGTTVDPVDELIQLDQKLWRFIDTAGLRKK 305

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL----KEINSKKEISFPKNID----FIFIGT 327
             +   EG +     RT   ++ A++ ++L    +EI  + +      +D     +    
Sbjct: 306 --VKNAEGHEYYASLRTRGTIDAAEVCVVLIDASQEITEQDQRVISMVLDAGKAMVIAFN 363

Query: 328 KSDLYSTYTEEY---------DHL-------ISSFTGEGLEELINKIKSILSNKFKKL 369
           K DL       Y         DHL       IS+ TG GL  L  ++ + L N  K++
Sbjct: 364 KWDLMDEDRRYYFDREFDMQLDHLPWVSKINISAETGRGLHRLEKEMTTALENWDKRI 421



 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD ++   D  G    + DT G     
Sbjct: 73  VAIVGRPNVGKSTLVNRFLGRREAVVEDHPGVTRDRVSYLSDWNGQRFWVQDTGGWDPDA 132

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +      ++   + +AD+I+++
Sbjct: 133 KGIHASIAHQSEAAMADADIIVMV 156


>gi|257877995|ref|ZP_05657648.1| GTP-binding protein engA [Enterococcus faecium 1,230,933]
 gi|257881218|ref|ZP_05660871.1| GTP-binding protein engA [Enterococcus faecium 1,231,502]
 gi|257884882|ref|ZP_05664535.1| GTP-binding protein engA [Enterococcus faecium 1,231,501]
 gi|257889806|ref|ZP_05669459.1| GTP-binding protein engA [Enterococcus faecium 1,231,410]
 gi|257892257|ref|ZP_05671910.1| GTP-binding protein engA [Enterococcus faecium 1,231,408]
 gi|258616518|ref|ZP_05714288.1| GTP-binding protein EngA [Enterococcus faecium DO]
 gi|260559046|ref|ZP_05831232.1| GTP-binding protein engA [Enterococcus faecium C68]
 gi|261207580|ref|ZP_05922265.1| GTP-binding protein engA [Enterococcus faecium TC 6]
 gi|289565092|ref|ZP_06445545.1| ribosome-associated GTPase EngA [Enterococcus faecium D344SRF]
 gi|293556739|ref|ZP_06675302.1| ribosome-associated GTPase EngA [Enterococcus faecium E1039]
 gi|293563397|ref|ZP_06677846.1| GTP-binding protein EngA [Enterococcus faecium E1162]
 gi|294614846|ref|ZP_06694741.1| GTP-binding protein EngA [Enterococcus faecium E1636]
 gi|294618677|ref|ZP_06698211.1| GTP-binding protein EngA [Enterococcus faecium E1679]
 gi|294621937|ref|ZP_06701085.1| GTP-binding protein EngA [Enterococcus faecium U0317]
 gi|314938008|ref|ZP_07845318.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a04]
 gi|314942006|ref|ZP_07848867.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133C]
 gi|314948741|ref|ZP_07852113.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0082]
 gi|314951759|ref|ZP_07854798.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133A]
 gi|314991834|ref|ZP_07857292.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133B]
 gi|314995875|ref|ZP_07860962.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a01]
 gi|257812223|gb|EEV40981.1| GTP-binding protein engA [Enterococcus faecium 1,230,933]
 gi|257816876|gb|EEV44204.1| GTP-binding protein engA [Enterococcus faecium 1,231,502]
 gi|257820720|gb|EEV47868.1| GTP-binding protein engA [Enterococcus faecium 1,231,501]
 gi|257826166|gb|EEV52792.1| GTP-binding protein engA [Enterococcus faecium 1,231,410]
 gi|257828636|gb|EEV55243.1| GTP-binding protein engA [Enterococcus faecium 1,231,408]
 gi|260074803|gb|EEW63119.1| GTP-binding protein engA [Enterococcus faecium C68]
 gi|260077963|gb|EEW65669.1| GTP-binding protein engA [Enterococcus faecium TC 6]
 gi|289163099|gb|EFD10946.1| ribosome-associated GTPase EngA [Enterococcus faecium D344SRF]
 gi|291592308|gb|EFF23922.1| GTP-binding protein EngA [Enterococcus faecium E1636]
 gi|291595060|gb|EFF26403.1| GTP-binding protein EngA [Enterococcus faecium E1679]
 gi|291598486|gb|EFF29555.1| GTP-binding protein EngA [Enterococcus faecium U0317]
 gi|291601071|gb|EFF31360.1| ribosome-associated GTPase EngA [Enterococcus faecium E1039]
 gi|291604658|gb|EFF34143.1| GTP-binding protein EngA [Enterococcus faecium E1162]
 gi|313589979|gb|EFR68824.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a01]
 gi|313593645|gb|EFR72490.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133B]
 gi|313596038|gb|EFR74883.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133A]
 gi|313599258|gb|EFR78103.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133C]
 gi|313642583|gb|EFS07163.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a04]
 gi|313644807|gb|EFS09387.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0082]
          Length = 436

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      E G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    ++ +D++L++
Sbjct: 236 RGKVYENTEKYSVMRAMRAIDRSDIVLMV 264



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + +E AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIEEADVIICV 89


>gi|254478797|ref|ZP_05092164.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
 gi|214035252|gb|EEB75959.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
          Length = 417

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 36/160 (22%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279
           I I G  NAGKSSL NAL  +++AIV+D+ GTT D ++  +++   G +V I DTAG+ +
Sbjct: 12  IGIFGRRNAGKSSLINALTNQEIAIVSDVAGTTTDPVSKAMEILPIGPVVLI-DTAGLDD 70

Query: 280 TDDIVEKEGIKRTFLEVENADLILL---------------LKEINSKKEISFPKNIDFIF 324
              + +   +K+T+  +   DL +L               LKEI         K I  + 
Sbjct: 71  EGPLGQMR-VKKTYEVLNRTDLAILVIDGAEGVTKFEEDILKEIRD-------KGIPVVG 122

Query: 325 IGTKSDL--YS-TYTEEYDHL-------ISSFTGEGLEEL 354
           +  K DL  YS T   E++         +S+   EG+EEL
Sbjct: 123 VINKKDLSNYSQTQKREWERRLGLRLIEVSAANREGIEEL 162


>gi|189467139|ref|ZP_03015924.1| hypothetical protein BACINT_03523 [Bacteroides intestinalis DSM
           17393]
 gi|189435403|gb|EDV04388.1| hypothetical protein BACINT_03523 [Bacteroides intestinalis DSM
           17393]
          Length = 393

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 19/166 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I + G  N+GKSSL NAL  +D  IV+  PGTT D +T  +++   G  + I DT 
Sbjct: 8   NRLHIALFGRRNSGKSSLVNALTGQDTVIVSPTPGTTTDPVTKAMEIHPLGPCLLI-DTP 66

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSD 330
           G  +  ++ E   ++ T   +   D+ LLL E    +E  +      + I  I +  K+D
Sbjct: 67  GFDDEGELGEMR-VECTLKIIGKTDIALLLCETGDAQEQEWLQRLKERGIPVILLLNKAD 125

Query: 331 LYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKF 366
                TE  +           +IS+  G G+E +   I   L   F
Sbjct: 126 ARPNTTELAEQIKASCGQPPIIISAKDGTGIEAIHRAILEKLPADF 171


>gi|218679763|ref|ZP_03527660.1| GTP-binding protein EngA [Rhizobium etli CIAT 894]
          Length = 437

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R  
Sbjct: 169 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 228

Query: 281 DDIVEK 286
             + EK
Sbjct: 229 ARVTEK 234


>gi|15603995|ref|NP_220510.1| GTP-binding protein Era [Rickettsia prowazekii str. Madrid E]
 gi|6225298|sp|Q9ZE30|ERA_RICPR RecName: Full=GTPase Era
 gi|3860686|emb|CAA14587.1| GTP-BINDING PROTEIN ERA (era) [Rickettsia prowazekii]
 gi|292571711|gb|ADE29626.1| GTP-binding protein Era [Rickettsia prowazekii Rp22]
          Length = 295

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   + + DT 
Sbjct: 5   IQKTISVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIVTLKDTQIILYDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303
           GI E   ++EK  ++  +  V +ADL+L
Sbjct: 65  GIFEPKGMLEKAMVRCAWSSVYSADLVL 92


>gi|309810373|ref|ZP_07704208.1| ribosome biogenesis GTPase Der [Dermacoccus sp. Ellin185]
 gi|308435686|gb|EFP59483.1| ribosome biogenesis GTPase Der [Dermacoccus sp. Ellin185]
          Length = 506

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 213 GEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           G   R G  ++ +LG  N GKSSL N LA ++  +V ++ GTTRD +   ++L G   + 
Sbjct: 237 GAYPRGGPRRVALLGRPNVGKSSLLNKLAGEERVVVDNVAGTTRDPVDEYIELGGKTWRF 296

Query: 272 SDTAGIR 278
            DTAGIR
Sbjct: 297 VDTAGIR 303



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D +  G    + DT G
Sbjct: 72  VAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVAYDAEWVGRRFTLVDTGG 126


>gi|139439609|ref|ZP_01773022.1| Hypothetical protein COLAER_02049 [Collinsella aerofaciens ATCC
           25986]
 gi|133774950|gb|EBA38770.1| Hypothetical protein COLAER_02049 [Collinsella aerofaciens ATCC
           25986]
          Length = 356

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L NA   K VAI + +  TTR  +   ++  GY +   DT G
Sbjct: 64  RSGF-VALVGRPNAGKSTLLNACYGKKVAITSPVAQTTRRRMRAVVNRPGYQLVFVDTPG 122

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           I +  D +  E  K    E+ + D++  L  I++ K I
Sbjct: 123 IHKPKDGLGSELNKSALFELNDVDVVAFL--IDATKPI 158


>gi|308809447|ref|XP_003082033.1| GTP-binding protein-like (ISS) [Ostreococcus tauri]
 gi|116060500|emb|CAL55836.1| GTP-binding protein-like (ISS) [Ostreococcus tauri]
          Length = 500

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 17/113 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE----GYLVKISDTAGI 277
           + I+G  N GKSSL N LA +  +IV+D  GTTRD  +ID  +E    G    + DTAGI
Sbjct: 229 LAIIGRPNVGKSSLLNGLAGEMRSIVSDFSGTTRD--SIDTMVEDKYTGKKYTLIDTAGI 286

Query: 278 RET------DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
           R         D  EK  + R    ++ AD++ L+ +         P   DF+ 
Sbjct: 287 RRRTQVKSGSDGAEKLSVGRALQAMKRADVVCLVIDATQG-----PSQQDFVL 334



 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ ++G  N GKS+LFN L     AIV D PG TRD +
Sbjct: 31  RVAVVGRPNVGKSALFNRLTGTKRAIVYDEPGVTRDRM 68


>gi|257898848|ref|ZP_05678501.1| GTP-binding protein engA [Enterococcus faecium Com15]
 gi|257836760|gb|EEV61834.1| GTP-binding protein engA [Enterococcus faecium Com15]
          Length = 436

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      E G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSENGQKFLMIDTAGMRK 235

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R    ++ +D++L++
Sbjct: 236 RGKVYENTEKYSVMRAMRAIDRSDIVLMV 264



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + +E AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIEEADVIICV 89


>gi|218508068|ref|ZP_03505946.1| GTP-binding protein EngA [Rhizobium etli Brasil 5]
          Length = 322

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R  
Sbjct: 53  RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 112

Query: 281 DDIVEK 286
             + EK
Sbjct: 113 ARVTEK 118


>gi|237843971|ref|XP_002371283.1| GTP-binding protein EngA , putative [Toxoplasma gondii ME49]
 gi|211968947|gb|EEB04143.1| GTP-binding protein EngA , putative [Toxoplasma gondii ME49]
 gi|221483760|gb|EEE22072.1| hypothetical protein TGGT1_123310 [Toxoplasma gondii GT1]
          Length = 1146

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L  + R    + I+G  N GKS L N L     ++V+   GTTRD +   +  +G L ++
Sbjct: 862 LPTLAREDVNVAIVGRPNVGKSQLLNRLLGVSRSLVSPQAGTTRDAVDELVQRDGRLYRL 921

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            DTAGIR    +  ++G++  F+ V+ A+  L
Sbjct: 922 VDTAGIRRARVVKAQKGVE--FVMVKRAERAL 951



 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKD----VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +LG  N GKSSLFN L  K+     AIV D  GTTRD         G    + DT G+
Sbjct: 652 VCLLGRPNVGKSSLFNTLKDKEDTAADAIVRDEDGTTRDRHYAFSVWRGRPFIVVDTGGL 711


>gi|332637852|ref|ZP_08416715.1| GTP-binding protein Der [Weissella cibaria KACC 11862]
          Length = 436

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 219 GYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           G+ +V ++G  N GKS++FN +A   ++IV D PG TRD +    +      ++ DT GI
Sbjct: 2   GFPVVAVVGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTRAEWLTREFRLIDTGGI 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305
              D+    + +++  + ++ AD+I+ +
Sbjct: 62  DMADEPFMTQIVQQAEIAIDEADVIVFM 89



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDDI 283
           +G  N GKSSL NA+  ++  IV+DI GTTRD +       +G    + DTAGIR+   +
Sbjct: 180 IGRPNVGKSSLVNAILGEERVIVSDISGTTRDAIDTRFTSADGDEFVMVDTAGIRKRGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    +++++++L++
Sbjct: 240 YESTEKYSVMRAMRAIDDSNVVLMV 264


>gi|313114942|ref|ZP_07800438.1| ribosome-associated GTPase EngA [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622735|gb|EFQ06194.1| ribosome-associated GTPase EngA [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 447

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 9/92 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L  + +AIV D PG TRD +  + +  G+   + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWNGHDFLLVDTGGIEPK- 64

Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKEI 308
                EGI     ++  + ++ AD I+++ ++
Sbjct: 65  ---ATEGILAHMREQAQIAIDTADCIIMVVDV 93



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +  ++  IV +  GTTRD +   +D        +DTAG+R+  
Sbjct: 179 VAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDAIDTPVDNAYGKFIFTDTAGLRKRS 238

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
           +I   +E+  + R    VE + + L+L
Sbjct: 239 NITDGLERYMVVRALAAVERSRVALIL 265


>gi|78357319|ref|YP_388768.1| small GTP-binding protein domain-containing protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219724|gb|ABB39073.1| iron-only hydrogenase maturation protein HydF [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 400

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I ++G  NAGKSSL NALA + +AIV+D+PGTT D +    +L     V   DTAG+ ++
Sbjct: 13  ITLVGRRNAGKSSLINALAGQQIAIVSDVPGTTTDPVAKPYELLPLGPVTFYDTAGLDDS 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEIS--FPKNIDFIFIGTKSDLYS 333
            ++ E   ++     +   D+ LL+      E   K+ ++      I  + +  K D+  
Sbjct: 73  GELGEMR-VRSARKVLARTDVALLVVSEAGMEEAEKRMLADLQAMEISALVVFNKQDIAD 131

Query: 334 TYTEE--------YDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              E+          H+ +SS   +G+ EL + I  ++  + K  P  +
Sbjct: 132 VRPEDVRFCHEAGVRHVQVSSVAQKGISELKSAIVEMVPEELKADPVLV 180


>gi|169832185|ref|YP_001718167.1| GTP-binding protein Era [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169639029|gb|ACA60535.1| GTP-binding protein Era [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 308

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N+L  + VAI++D P TTR  +   L  +   V   DT G
Sbjct: 15  RSGF-VTIIGRPNVGKSTLLNSLVGRKVAIISDKPQTTRHRIRAVLTRDDAQVVFVDTPG 73

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
           I +    + +  +      +++ DLIL L E + +   S P + DFI 
Sbjct: 74  IHKPKHRLGRMMVDTALKTLQDVDLILFLIEAHRE---SGPGD-DFIL 117


>gi|165933610|ref|YP_001650399.1| GTP-binding protein Der [Rickettsia rickettsii str. Iowa]
 gi|189037156|sp|B0BUT3|DER_RICRO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|165908697|gb|ABY72993.1| GTP-binding protein [Rickettsia rickettsii str. Iowa]
          Length = 447

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDEHP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + + +  I++T   +  ADLI  + +  S
Sbjct: 66  NSMGERLIEQTTKAILEADLICFMVDARS 94



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K+ DTAG+R+ 
Sbjct: 181 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240

Query: 281 DDIVE 285
             I E
Sbjct: 241 STITE 245


>gi|32491325|ref|NP_871579.1| hypothetical protein WGLp576 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166532|dbj|BAC24722.1| b2511 [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 456

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 201 NDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           N +SS I    L +I  + Y KI I+G  N+GKS+L N + +++ + V++ PGTT+DVL 
Sbjct: 174 NKVSSAIKNLTLNKIEMDKYPKIAIIGRPNSGKSTLMNCILRQNRSTVSNSPGTTKDVLY 233

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVE--KEGIKRTFLEVENADLILLL 305
                +       DTAG+ +  + V   K  IK T   ++  D+ +L+
Sbjct: 234 SLYSNKEKTYLFIDTAGLVKKKNFVHINKSVIKNTLNVIKKIDVSILV 281



 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + I+G  N+GKS+LFN L KK  A+V+  PG T D
Sbjct: 5   VSIIGKQNSGKSTLFNKLTKKRRALVSKDPGFTSD 39


>gi|223558010|gb|ACM91016.1| putative GTP-binding protein [uncultured bacterium URE4]
          Length = 361

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 4/89 (4%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIR 278
            +I   G +N+GKS+L NALA ++V++V+D+PGTT D +   ++L G    I  DTAG  
Sbjct: 4   MQIAFFGATNSGKSTLVNALAGQEVSLVSDLPGTTTDPVRKAIELPGLGPCILVDTAGYG 63

Query: 279 ETDDI-VEKEGIKRTFLEVENADLILLLK 306
           +   +  E+E  +R+   ++  D+ +LL+
Sbjct: 64  DPGALGAERE--RRSRATIDATDIAVLLR 90


>gi|229587033|ref|YP_002845534.1| GTP-binding protein EngA [Rickettsia africae ESF-5]
 gi|259645884|sp|C3PPD1|DER_RICAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|228022083|gb|ACP53791.1| GTP-binding protein [Rickettsia africae ESF-5]
          Length = 447

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDEHP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + + +  I++T   +  ADLI  +
Sbjct: 66  NSMGERLIEQTTKAILEADLICFM 89



 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K+ DTAG+R+ 
Sbjct: 181 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             I   +EK     T   ++ A+ ++L+
Sbjct: 241 STITKSLEKLSASDTINSIKFANTVILM 268


>gi|117919157|ref|YP_868349.1| small GTP-binding protein [Shewanella sp. ANA-3]
 gi|117611489|gb|ABK46943.1| small GTP-binding protein [Shewanella sp. ANA-3]
          Length = 412

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 26/173 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
           Y I ++G  NAGKSSL N +A + ++IV+DI GTT D +    +L+    V   DTAGI 
Sbjct: 22  YHIALVGRRNAGKSSLLNMIAGQQISIVSDIKGTTTDAVAKAYELQPLGPVTFYDTAGI- 80

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE-----------INSKKEISFPKNIDFIFIGT 327
           + D  +    +K T   +  +D+ LL+ +           +N  +++  P     + +  
Sbjct: 81  DDDGELGAMRVKATRKVLFRSDMALLVVDEQGLYPSDIALVNEIQQMRMP----ILVVFN 136

Query: 328 KSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
           K+D+ +   E             ++S+ TG   + L  +I  +   ++K+ P 
Sbjct: 137 KADICTPKAENIAFCQQQSLPFIVVSATTGLATKMLKQQIIDLAPAEYKQEPL 189


>gi|284924491|emb|CBG37625.1| putative ATP/GTP-binding protein [Escherichia coli 042]
          Length = 290

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI Q  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHI-QEHLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|323704187|ref|ZP_08115766.1| GTP-binding protein Era [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536253|gb|EGB26025.1| GTP-binding protein Era [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 299

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 6/87 (6%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G +N GKS+L NAL  + VAI +D P TTR+ +   L  E Y V   DT GI +    
Sbjct: 10  LIGRTNVGKSTLLNALLNEKVAITSDKPQTTRNTIQGILTGEDYQVIFIDTPGIHKPKHK 69

Query: 284 VEK---EGIKRTFLEVENADLILLLKE 307
           + +   E +K+T  EV   DLI+ + E
Sbjct: 70  LSEFMIESVKKTLAEV---DLIIYMVE 93


>gi|317122971|ref|YP_004102974.1| GTP-binding protein Era [Thermaerobacter marianensis DSM 12885]
 gi|315592951|gb|ADU52247.1| GTP-binding protein Era [Thermaerobacter marianensis DSM 12885]
          Length = 391

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 29/182 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ + ++G  N GKS+L N L  + +AI++D P TTR  +   L+  G  +   D
Sbjct: 96  EGFRSGF-VALIGRPNVGKSTLLNQLIGRKIAIMSDKPQTTRTRILGVLNRPGAQLIFVD 154

Query: 274 TAGIRETDDIVEKEGI---KRTFLEVENADLILLLKEINSKK-------------EISFP 317
           T GI +   ++ +  +   +RT  EVE   ++  L E   ++             E+  P
Sbjct: 155 TPGIHKPQHLLGEHMVRVARRTLQEVE---VVCWLVEAPDREPGPGDRYIAEQLVEVKTP 211

Query: 318 K-----NIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           K      ID +  G    +   + +       H +S+  G G+ EL+ +++  L    + 
Sbjct: 212 KILVVNKIDQVAPGEVPAIAQRFAQLGQFAAVHPVSALHGVGVPELVEELEGRLPQGPRF 271

Query: 369 LP 370
            P
Sbjct: 272 FP 273


>gi|221504233|gb|EEE29908.1| GTPase mss1/trme, putative [Toxoplasma gondii VEG]
          Length = 1151

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L  + R    + I+G  N GKS L N L     ++V+   GTTRD +   +  +G L ++
Sbjct: 867 LPTLAREDVNVAIVGRPNVGKSQLLNRLLGVSRSLVSPQAGTTRDAVDELVQRDGRLYRL 926

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            DTAGIR    +  ++G++  F+ V+ A+  L
Sbjct: 927 VDTAGIRRARVVKAQKGVE--FVMVKRAERAL 956



 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKD----VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +LG  N GKSSLFN L  K+     AIV D  GTTRD         G    + DT G+
Sbjct: 652 VCLLGRPNVGKSSLFNTLKDKEDAAADAIVRDEDGTTRDRHYAFSVWRGRPFIVVDTGGL 711


>gi|317506861|ref|ZP_07964633.1| ribosome-associated GTPase EngA [Segniliparus rugosus ATCC BAA-974]
 gi|316254789|gb|EFV14087.1| ribosome-associated GTPase EngA [Segniliparus rugosus ATCC BAA-974]
          Length = 449

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N    +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 13  VAVVGRPNVGKSTLVNRFVGRRAAVVEDVPGVTRDRVSYDAEWGGRSFLVQDTGGWEPDA 72

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++  L +  AD+ILL+
Sbjct: 73  TGIGLSIAQQAELAMATADVILLV 96



 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA +  ++V ++ GTT D +   + L+    +  DTAG+R
Sbjct: 185 RVALVGRPNVGKSSLINKLAGETRSVVNEMAGTTVDPVDSIITLDDEEWQFVDTAGLR 242


>gi|291456800|ref|ZP_06596190.1| ribosome-associated GTPase EngA [Bifidobacterium breve DSM 20213]
 gi|291382077|gb|EFE89595.1| ribosome-associated GTPase EngA [Bifidobacterium breve DSM 20213]
          Length = 708

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 15/112 (13%)

Query: 207 ISQGKLGEIIR-NGY-------KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ GKL E  + +GY       ++ ++G  N GKSSL N LA  + A+V D+ GTTRD +
Sbjct: 427 VALGKLKEAEKASGYLTPSGLRRVALVGRPNVGKSSLLNQLAHSERAVVNDLAGTTRDPV 486

Query: 259 --TIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLL 305
              +D+D E +L    DTAGI+     +   E     RT   +E ++L L+L
Sbjct: 487 DEIVDIDGEDWL--FIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALIL 536



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAIVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E     +  + V  AD ++ +
Sbjct: 335 EGIESAIASQAQVAVTLADAVVFV 358


>gi|217074544|gb|ACJ85632.1| unknown [Medicago truncatula]
          Length = 319

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ I GTTRD +  +    +G    + DTAGIR+ 
Sbjct: 54  ISIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPDGQKFHLIDTAGIRKR 113

Query: 281 DDI------VEKEGIKRTFLEVENADLILLLKE 307
             +       E   + R F  +  +D+  L+ E
Sbjct: 114 TTVASAGSTTEALSVNRAFRAIRRSDVGALVIE 146


>gi|225867922|ref|YP_002743870.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus]
 gi|225701198|emb|CAW98121.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus]
          Length = 446

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 33/157 (21%)

Query: 214 EIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVK 270
           EI+ N    +  ++G  N GKSSL NA+  ++  I + + GTTRD +     D  G    
Sbjct: 177 EIVENDDVIRFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTSFTDESGQAYT 236

Query: 271 ISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT 327
           + DTAG+R++  +    EK  + R    ++ +D++L++  IN+++ I             
Sbjct: 237 MIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGI------------- 281

Query: 328 KSDLYSTYTEEYDHLISSF---TGEGLEELINKIKSI 361
                     +YD  I+ F    G+G+  ++NK  +I
Sbjct: 282 ---------RDYDKRIAGFAHEAGKGMIIVVNKWDTI 309



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 16  VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRQFSLIDTGGIDDVD 75

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 76  APFMEQIKHQAHIAMDEADVIVFV 99


>gi|34581350|ref|ZP_00142830.1| conserved GTP-binding protein [Rickettsia sibirica 246]
 gi|28262735|gb|EAA26239.1| conserved GTP-binding protein [Rickettsia sibirica 246]
          Length = 447

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDEHP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + + +  I++T   +  ADLI  +
Sbjct: 66  NSMGERLIEQTTKAILEADLICFM 89



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K+ DTAG+R+ 
Sbjct: 181 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240

Query: 281 DDIVE 285
             I E
Sbjct: 241 STITE 245


>gi|317969119|ref|ZP_07970509.1| GTP-binding protein Era-like protein [Synechococcus sp. CB0205]
          Length = 327

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 22/182 (12%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           ++   S G+  E  R+G+ + ++G  N GKS+L N L  + VAI + +  TTR+ L   L
Sbjct: 21  MAGGFSLGQSPEGFRSGF-VALVGRPNVGKSTLMNQLVGEKVAITSPVAQTTRNRLRAIL 79

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INS 310
                 + + DT GI +   ++ +  ++     +   D +LLL +            +  
Sbjct: 80  TTPTAQLVLVDTPGIHKPHHLLGERLVQTARGAIGEVDQVLLLVDGSQAAGRGDGFIVEL 139

Query: 311 KKEISFPKNI-----DFIFIGTKSDLYSTYTEEYD----HLISSFTGEGLEELINKIKSI 361
            + I  P  +     D +     ++L ++Y E       H +S+  GEG E L++ + + 
Sbjct: 140 LERIKVPVQVALNKSDLVDPAQAAELEASYRELVPGWPLHPVSALNGEGTEALVSALAAE 199

Query: 362 LS 363
           L 
Sbjct: 200 LP 201


>gi|227535137|ref|ZP_03965186.1| GTP-binding protein engA [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187182|gb|EEI67249.1| GTP-binding protein engA [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 445

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NA+  ++  IV+ I GTTRD +    +       + DTAGIR+ 
Sbjct: 186 KFSLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEAVDETFTMIDTAGIRKR 245

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             +    EK  + R    ++ +D++L +  IN+++ I
Sbjct: 246 GKVYENTEKYAVMRALRAIDRSDVVLFV--INAEEGI 280



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +  G    + DT GI   D
Sbjct: 16  LAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGTSEWLGKEFAVIDTGGIDLGD 75

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           +    +   +  + ++ AD+IL L +I S
Sbjct: 76  EPFLAQIKDQAEIAIDEADVILFLADIES 104


>gi|121535380|ref|ZP_01667192.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1]
 gi|121306072|gb|EAX47002.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1]
          Length = 408

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGI 277
           I I G  NAGKSSL NAL  +++A+V+D+PGTT D +   ++ L    V I DTAGI
Sbjct: 12  IAIFGRRNAGKSSLINALTNQNIALVSDVPGTTTDPVYKAMEILPIGPVVIIDTAGI 68


>gi|157964826|ref|YP_001499650.1| GTP-binding protein EngA [Rickettsia massiliae MTU5]
 gi|157844602|gb|ABV85103.1| GTP-binding protein [Rickettsia massiliae MTU5]
          Length = 483

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 42  ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDENP 101

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + + +  +++T   +  ADLI  +
Sbjct: 102 NSMGERLMEQTTKAILEADLICFM 125



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K+ DTAG+R+ 
Sbjct: 217 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 276

Query: 281 DDIVE 285
             I E
Sbjct: 277 STITE 281


>gi|317490504|ref|ZP_07948984.1| GTP-binding protein HflX [Eggerthella sp. 1_3_56FAA]
 gi|316910397|gb|EFV32026.1| GTP-binding protein HflX [Eggerthella sp. 1_3_56FAA]
          Length = 436

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 21/186 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +K+ + G++NAGKSSL N L   DV +  D    T D  T   +L EG  + ++DT G  
Sbjct: 217 FKVALAGYTNAGKSSLLNRLTNADV-LAYDKLFATLDSTTRKFELPEGREITVTDTVGFI 275

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEIS---------FPKNIDFIFIG 326
           +       E  K T  E+  ADL+L + + +S   + +I+           +++  + + 
Sbjct: 276 QKLPTTLIEAFKSTLDEITGADLVLHVVDASSDEYEAQIAAVEDVLGQIHAQDLSRVLVF 335

Query: 327 TKSDLYS-------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL                  +S+  GEG+ EL+  +  + S + + L   IP ++  
Sbjct: 336 NKCDLLGEERLGALKARHPQAQFVSAAMGEGVGELVEHVARVASAQDEHLDVLIPYNRGD 395

Query: 380 LYHLSQ 385
           L  ++ 
Sbjct: 396 LVSVAH 401


>gi|195978761|ref|YP_002124005.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975466|gb|ACG62992.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 446

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 33/157 (21%)

Query: 214 EIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVK 270
           EI+ N    +  ++G  N GKSSL NA+  ++  I + + GTTRD +     D  G    
Sbjct: 177 EIVENDDVIRFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTSFTDESGQAYT 236

Query: 271 ISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT 327
           + DTAG+R++  +    EK  + R    ++ +D++L++  IN+++ I             
Sbjct: 237 MIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGI------------- 281

Query: 328 KSDLYSTYTEEYDHLISSF---TGEGLEELINKIKSI 361
                     +YD  I+ F    G+G+  ++NK  +I
Sbjct: 282 ---------RDYDKRIAGFAHEAGKGMIIVVNKWDTI 309



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 16  VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRQFSLIDTGGIDDVD 75

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 76  APFMEQIKHQAHIAMDEADVIVFV 99


>gi|260433297|ref|ZP_05787268.1| ribosome-associated GTPase EngA [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417125|gb|EEX10384.1| ribosome-associated GTPase EngA [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 484

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ + T
Sbjct: 5   LAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEGRLGDLRFTVIDTAGLEDAT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DD ++    + T   V+ AD+ L +
Sbjct: 65  DDSLQGRMRRLTERAVDMADVCLFM 89



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D  G  ++I DTAG+R  
Sbjct: 201 QVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLRIDWNGTPMRIFDTAGMRKK 260

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +  D +EK  +      V+ A+++++L
Sbjct: 261 AKVQDKLEKLSVSDGLRAVKFAEVVVVL 288


>gi|311899123|dbj|BAJ31531.1| putative GTP-binding protein EngA [Kitasatospora setae KM-6054]
          Length = 484

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N +A +D  +V ++ GTTRD +   ++L G   K  DTAGIR
Sbjct: 223 RVALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELIELGGKTWKFIDTAGIR 280



 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKS+L N +  +  A+V D PG TRD ++ +    G   K+ DT G
Sbjct: 47  LAIVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVSYEAMWAGRRFKVLDTGG 101


>gi|290968112|ref|ZP_06559657.1| small GTP-binding protein domain protein [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781787|gb|EFD94370.1| small GTP-binding protein domain protein [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 400

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 12/144 (8%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIV 284
           G+ NAGKSSL NA+  +D++IV+D  GTT D ++  ++L     V I DT G+ +T  + 
Sbjct: 18  GYRNAGKSSLVNAVTGQDLSIVSDTEGTTTDPVSKAMELLPLGPVLIIDTPGLDDTGTLG 77

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           EK  + RT   +   D+ +L+ +  +          ++   K + ++ +  K D+     
Sbjct: 78  EKR-VARTRRVLNKTDIAVLVADAAAGLRPLDMEVLQLIQQKGLPYLIVYNKRDMLENVP 136

Query: 337 E--EYDHLISSFTGEGLEELINKI 358
              E++  +S+   +G+ EL  ++
Sbjct: 137 PAGEHEMYVSALKKQGIYELKERL 160


>gi|56697187|ref|YP_167551.1| GTP-binding protein EngA [Ruegeria pomeroyi DSS-3]
 gi|81676219|sp|Q5LR04|DER_SILPO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|56678924|gb|AAV95590.1| GTP-binding protein EngA [Ruegeria pomeroyi DSS-3]
          Length = 487

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+   T
Sbjct: 5   LAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGQARLGDLRFTVIDTAGLETAT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           DD ++    + T   V+ AD+ L +
Sbjct: 65  DDSLQGRMRRLTERAVDMADICLFM 89



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D     ++I DTAG+R+ 
Sbjct: 204 QVAVVGRPNAGKSTLINRILGEDRLLTGPEAGITRDAISLQIDWNDTPMRIFDTAGMRKK 263

Query: 281 DDIVEK 286
             + EK
Sbjct: 264 AKVQEK 269


>gi|328869018|gb|EGG17396.1| GTP-binding protein engA [Dictyostelium fasciculatum]
          Length = 770

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           KI I+G  NAGKSSL N + +++ +IV+D+PGTT D +   L   + + + + DTAGIR 
Sbjct: 307 KISIVGQPNAGKSSLLNRIIEQERSIVSDVPGTTHDPVDCHLVWRDKHDLTLIDTAGIRR 366

Query: 280 --TDDI-VEKEGIKRTFLEVENADLILLL 305
             T  + +EK  +      +E + ++L +
Sbjct: 367 RATHRVGLEKSSVLWAMKAIERSHVVLFV 395



 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 222 IVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I ++G  N GKS+LFN + + +  A+V DIPGTTRD    +  + G   ++ DT G+
Sbjct: 120 IALVGKPNVGKSTLFNRIVESQRQALVEDIPGTTRDRYYGEAIVYGKQFQVVDTGGM 176


>gi|238022840|ref|ZP_04603266.1| hypothetical protein GCWU000324_02757 [Kingella oralis ATCC 51147]
 gi|237866043|gb|EEP67179.1| hypothetical protein GCWU000324_02757 [Kingella oralis ATCC 51147]
          Length = 70

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 7/69 (10%)

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCG---LDIIAENLRLASVSLGKITGCVDVEQLLDI 431
           +  RH++ L    R L+ A+L    CG   L+++AE+LRLA  +  +ITG    + LL +
Sbjct: 6   ARSRHIHALETAQRELDNAAL----CGNHQLELLAEHLRLAQNACSEITGEFTADDLLGV 61

Query: 432 IFSKFCIGK 440
           IFS+FCIGK
Sbjct: 62  IFSRFCIGK 70


>gi|325265154|ref|ZP_08131880.1| GTP-binding protein [Clostridium sp. D5]
 gi|324029558|gb|EGB90847.1| GTP-binding protein [Clostridium sp. D5]
          Length = 406

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 25/155 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  NAGKSS+ NA+  +++AIV+DI GTT D +   ++L     V I DT G+ +T
Sbjct: 14  IGIFGRRNAGKSSIINAITGQNLAIVSDIKGTTTDPVLKAMELLPLGPVVIIDTPGLDDT 73

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSD 330
            ++  K  I++ +  +   D+ +L+  I+S   ++            K I F+ +  KSD
Sbjct: 74  GEL-GKLRIQKAYQILNKTDIAVLV--IDSTAGMTEADAGILDRIMKKQIPFVIVLNKSD 130

Query: 331 LYSTYTE---------EYDHLI--SSFTGEGLEEL 354
           +  T              D++I  S+ TGE + EL
Sbjct: 131 IAGTSNAASSVNMPDVPSDNIIAVSTVTGENIHEL 165


>gi|284045183|ref|YP_003395523.1| ribosome-associated GTPase EngA [Conexibacter woesei DSM 14684]
 gi|283949404|gb|ADB52148.1| ribosome-associated GTPase EngA [Conexibacter woesei DSM 14684]
          Length = 484

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ ++G  N GKSSL N +   D  IV+++ GTTRD + +    E   + + DTAG+R  
Sbjct: 175 RLALIGRPNVGKSSLVNKMLGSDRVIVSEVAGTTRDAIDLPFRFEDRRLILVDTAGMRRQ 234

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +  D +E     R+    E AD+ L++
Sbjct: 235 AKVGDSIEYYTALRSRRAAERADVALVV 262



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GKSSL N L +   A+V + PG TRD   +  +  G    + DT G+   
Sbjct: 2   KVAVVGYPNVGKSSLVNRLTQSREAVVHERPGVTRDRKELQTEWNGRRFTLIDTGGV--- 58

Query: 281 DDIVEKEGIKRTFLE 295
            D+ +++ ++R+  E
Sbjct: 59  -DLEDRDEMQRSIQE 72


>gi|229586356|ref|YP_002844857.1| GTP-binding protein Era [Rickettsia africae ESF-5]
 gi|228021406|gb|ACP53114.1| GTP-binding protein Era [Rickettsia africae ESF-5]
          Length = 339

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 20/159 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E  
Sbjct: 55  VCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114

Query: 282 DIVEKEGIKRTFLEVENADLILL-LKEINSKKEISF-------PKNIDFIFIGTKSDLYS 333
             +EK  ++  +  + +ADL+LL +  + S  +I+          NI  IF+  K D+ S
Sbjct: 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLLNKIDIES 174

Query: 334 TY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360
            Y        TE + D L   IS+ +G+ ++ L+  I S
Sbjct: 175 KYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 213


>gi|312623204|ref|YP_004024817.1| small GTP-binding protein [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203671|gb|ADQ46998.1| small GTP-binding protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 403

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I I G  NAGKSSL NA+  + +AIV+D+PGTT D +   +++   G +V I DTAGI +
Sbjct: 12  IAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKSMEILPLGPVVLI-DTAGI-D 69

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            + I+ K  +++T   +   D+ +L+
Sbjct: 70  DEGILGKLRVEKTLEVLNKTDIAILV 95


>gi|157964182|ref|YP_001499006.1| GTP-binding protein Era [Rickettsia massiliae MTU5]
 gi|157843958|gb|ABV84459.1| GTP-binding protein Era [Rickettsia massiliae MTU5]
          Length = 347

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 20/159 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E  
Sbjct: 63  VCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 122

Query: 282 DIVEKEGIKRTFLEVENADLILL-LKEINSKKEISF-------PKNIDFIFIGTKSDLYS 333
             +EK  ++  +  + +ADL+LL +  + S  +I+          NI  IF+  K D+ S
Sbjct: 123 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 182

Query: 334 TY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360
            Y        TE + D L   IS+ +G+ ++ L+  I S
Sbjct: 183 KYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 221


>gi|146296153|ref|YP_001179924.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409729|gb|ABP66733.1| iron-only hydrogenase maturation protein HydF [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 403

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 8/88 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I I G  NAGKSSL NA+  + +AIV+D+PGTT D +   +++   G +V I DTAGI  
Sbjct: 12  IAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKSMEILPLGPVVLI-DTAGI-- 68

Query: 280 TDDIVE--KEGIKRTFLEVENADLILLL 305
            DD+ E  K  I++T   +   D+ +L+
Sbjct: 69  -DDVGELGKLRIEKTLEVLNKTDIAILV 95


>gi|114762902|ref|ZP_01442334.1| GTP-binding protein EngA [Pelagibaca bermudensis HTCC2601]
 gi|114544512|gb|EAU47519.1| GTP-binding protein EngA [Roseovarius sp. HTCC2601]
          Length = 487

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  + +A+V D PG TRD+   +  L      + DTAG+ +
Sbjct: 3   FSLAIVGRPNVGKSTLFNRLVGRRLALVDDQPGVTRDLREGEGKLGDLRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TDD +     + T   V+ AD+ L +
Sbjct: 63  ATDDSLPGRMRRLTERAVDMADVCLFM 89



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  NAGKS+L N +  ++  +     G TRD +++  +  G  ++I DTAG+R+ 
Sbjct: 203 QIAVVGRPNAGKSTLVNKIIGEERLLTGPEAGITRDAISVRTEWGGVPMRIFDTAGMRKK 262

Query: 281 DDIVEK 286
             + EK
Sbjct: 263 ARVQEK 268


>gi|51473231|ref|YP_066988.1| GTP-binding protein Era [Rickettsia typhi str. Wilmington]
 gi|81390309|sp|Q68XY6|ERA_RICTY RecName: Full=GTPase Era
 gi|51459543|gb|AAU03506.1| Era-like GTP-binding protein [Rickettsia typhi str. Wilmington]
          Length = 295

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 24/167 (14%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   + + DT 
Sbjct: 5   IQKTISVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQIILYDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFI 325
           GI E   ++EK  ++  +  + +ADL+L +  I+S K +              NI  IF+
Sbjct: 65  GIFEPKGMLEKAMVRCAWSSLYSADLVLSI--IDSLKPLDDMAHNILNQFCLLNIVPIFL 122

Query: 326 GTKSDLYSTYTEEYDHL------------ISSFTGEGLEELINKIKS 360
             K D+ S Y  +                IS+  G+ ++ L+  IKS
Sbjct: 123 LNKIDIESKYLNDIKAFLKISHPKSLLFPISALCGKNVDVLLKYIKS 169


>gi|325279601|ref|YP_004252143.1| small GTP-binding protein [Odoribacter splanchnicus DSM 20712]
 gi|324311410|gb|ADY31963.1| small GTP-binding protein [Odoribacter splanchnicus DSM 20712]
          Length = 399

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 9/135 (6%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           + +VI G  N GKSS+ N + ++D A+V+ I GTT D +    ++ G   V + DTAG  
Sbjct: 4   FHLVITGRRNTGKSSIVNTILQQDKAVVSPIAGTTTDPVKKSYEIPGVASVVLIDTAGTD 63

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKEI---SFPK-NIDFIFIGTKSDL 331
           +  ++ E   +K+TF  +  AD  LL+         +EI    F K  + F+ +  KSDL
Sbjct: 64  DEGELGELR-VKKTFETIRQADAALLVITGNRFGHFEEILTEEFQKLKLPFLIVHNKSDL 122

Query: 332 YSTYTEEYDHLISSF 346
                +  + L+  +
Sbjct: 123 EPLQEQLREKLLQKY 137


>gi|307719724|ref|YP_003875256.1| hypothetical protein STHERM_c20490 [Spirochaeta thermophila DSM
           6192]
 gi|306533449|gb|ADN02983.1| hypothetical protein STHERM_c20490 [Spirochaeta thermophila DSM
           6192]
          Length = 408

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 19/175 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
           ++ ++G++NAGKSSLF  L  + V I  D P  T D  T    + G+  V +SDT G  +
Sbjct: 199 RVSLVGYTNAGKSSLFTRLTGQAVRI-QDRPFVTLDTTTRTCLIPGWGRVVVSDTVGFIQ 257

Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF---PKNIDFIFIGT 327
                  +    T  EV +A L+L         LL  +++ +E+       +I  I +  
Sbjct: 258 HLPHTLVDAFHATLEEVRDAHLLLEVVDLSSPNLLLHLSTTEEVLTEIGAHHIPRIRVYN 317

Query: 328 KSDLYSTYT--EEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           K+D  S +      DH   L+S+ TGEG+E L++ I   +   +      +P H+
Sbjct: 318 KADRSSPHPLLPPSDHPEILVSAKTGEGIEGLLSLIVREMERHYPIETLELPYHR 372


>gi|225871164|ref|YP_002747111.1| GTP-binding protein EngA [Streptococcus equi subsp. equi 4047]
 gi|225700568|emb|CAW95070.1| GTP-binding protein EngA [Streptococcus equi subsp. equi 4047]
          Length = 446

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 31/145 (21%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282
           ++G  N GKSSL NA+  ++  I + + GTTRD +     D  G    + DTAG+R++  
Sbjct: 189 LIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTSFTDESGQAYTMIDTAGMRKSGK 248

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +    EK  + R    ++ +D++L++  IN+++ I                       +Y
Sbjct: 249 VYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGI----------------------RDY 284

Query: 340 DHLISSF---TGEGLEELINKIKSI 361
           D  I+ F    G+G+  ++NK  +I
Sbjct: 285 DKRIAGFAHEAGKGMIIVVNKWDTI 309



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 16  VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRQFSLIDTGGIDDVD 75

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
               ++   +  + ++ AD+I+ +
Sbjct: 76  APFMEQIKHQAHIAMDEADVIVFV 99


>gi|34580888|ref|ZP_00142368.1| GTP-binding protein Era [Rickettsia sibirica 246]
 gi|28262273|gb|EAA25777.1| GTP-binding protein Era [Rickettsia sibirica 246]
          Length = 339

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 20/159 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E  
Sbjct: 55  VCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114

Query: 282 DIVEKEGIKRTFLEVENADLILL-LKEINSKKEISF-------PKNIDFIFIGTKSDLYS 333
             +EK  ++  +  + +ADL+LL +  + S  +I+          NI  IF+  K D+ S
Sbjct: 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLLNKIDIES 174

Query: 334 TY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360
            Y        TE + D L   IS+ +G+ ++ L+  I S
Sbjct: 175 KYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 213


>gi|315282971|ref|ZP_07871260.1| GTP-binding protein EngA [Listeria marthii FSL S4-120]
 gi|313613383|gb|EFR87238.1| GTP-binding protein EngA [Listeria marthii FSL S4-120]
          Length = 191

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++   +  + ++ AD+I+ +
Sbjct: 66  EPFLEQIRAQAEIAIDEADVIIFI 89


>gi|163761004|ref|ZP_02168082.1| GTP-binding protein EngA [Hoeflea phototrophica DFL-43]
 gi|162281785|gb|EDQ32078.1| GTP-binding protein EngA [Hoeflea phototrophica DFL-43]
          Length = 499

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N    +D  +     G TRD + +D + +G  +K+ DTAG+R  
Sbjct: 205 RVAIVGRPNAGKSTLINQFLGQDRLLTGPEAGITRDSIAVDFEWKGRKIKLFDTAGLRRK 264

Query: 281 DDIVEK 286
             + EK
Sbjct: 265 ARVQEK 270



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + I+G  N GKS+LFN LA + +A+V D PG TRD    D  L      + DTAG+  + 
Sbjct: 5   LAIVGRPNVGKSTLFNRLAGRKLALVDDTPGVTRDRRPGDARLVDLRFTMIDTAGLEVSG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D +E     +T   ++ AD  + L
Sbjct: 65  PDTLEGRMRAQTEAAIDEADGAMFL 89


>gi|148656306|ref|YP_001276511.1| GTP-binding protein Era [Roseiflexus sp. RS-1]
 gi|148568416|gb|ABQ90561.1| GTP-binding protein Era [Roseiflexus sp. RS-1]
          Length = 451

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL  + VAIV+  P TTR  +   L      +   DT G
Sbjct: 162 RSGF-VALVGRPNVGKSTLLNALLGQKVAIVSPKPQTTRTAIRGILSRPDAQIVFVDTPG 220

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI---------FIGT 327
           I E  + +    +K+    + +AD++ ++ +I S+   S  + I  +          +  
Sbjct: 221 IHEPRNRLGAYMVKQARRAIPDADVVCMVVDI-SRPPGSLDERIAALVRKAQARRMLVLN 279

Query: 328 KSDLYSTYTEEY------------DHLISSFTGEGLEELINKIKSILS 363
           K DL +    E+            +  +S+  G+GL+ L+++I  +L 
Sbjct: 280 KIDLPTRSGNEHLQAYRALAPWDMEVAVSALRGQGLDALVDEIVRLLP 327


>gi|15892081|ref|NP_359795.1| GTP-binding protein Era [Rickettsia conorii str. Malish 7]
 gi|21263592|sp|Q92JA9|ERA_RICCN RecName: Full=GTPase Era
 gi|15619203|gb|AAL02696.1| GTP-binding protein Era [Rickettsia conorii str. Malish 7]
          Length = 339

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 20/159 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E  
Sbjct: 55  VCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114

Query: 282 DIVEKEGIKRTFLEVENADLILL-LKEINSKKEISF-------PKNIDFIFIGTKSDLYS 333
             +EK  ++  +  + +ADL+LL +  + S  +I+          NI  IF+  K D+ S
Sbjct: 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLLNKIDIES 174

Query: 334 TY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360
            Y        TE + D L   IS+ +G+ ++ L+  I S
Sbjct: 175 KYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 213


>gi|317472657|ref|ZP_07931972.1| small GTP-binding protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899834|gb|EFV21833.1| small GTP-binding protein [Anaerostipes sp. 3_2_56FAA]
          Length = 395

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 81/153 (52%), Gaps = 18/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           I + G  NAGKSS+ NAL  +++AIV+D+ GTT D +   ++L   G +V I DT G+ +
Sbjct: 14  IALFGRRNAGKSSIVNALTGQELAIVSDVKGTTTDPVFKAMELLPLGPVVMI-DTPGLDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL 331
             ++ EK  +K+    +   D+ L++ +  +          ++   + + ++ +  K+DL
Sbjct: 73  EGELGEKR-VKKAKEVLRKTDIALVIADAETGITEFEQGILDLIRERKLPYLIVYNKTDL 131

Query: 332 YS-TYTEEYDH--LISSFTGE---GLEELINKI 358
                 E+ DH   +S+ T E   GL+E I K+
Sbjct: 132 AGRVRAEDNDHACFVSAVTKEGIFGLKEAIGKL 164


>gi|314922998|gb|EFS86829.1| GTP-binding protein HflX [Propionibacterium acnes HL001PA1]
 gi|314966774|gb|EFT10873.1| GTP-binding protein HflX [Propionibacterium acnes HL082PA2]
 gi|314981109|gb|EFT25203.1| GTP-binding protein HflX [Propionibacterium acnes HL110PA3]
 gi|315091935|gb|EFT63911.1| GTP-binding protein HflX [Propionibacterium acnes HL110PA4]
 gi|315093309|gb|EFT65285.1| GTP-binding protein HflX [Propionibacterium acnes HL060PA1]
 gi|315103436|gb|EFT75412.1| GTP-binding protein HflX [Propionibacterium acnes HL050PA2]
 gi|327327600|gb|EGE69376.1| GTP-binding protein HflX [Propionibacterium acnes HL103PA1]
          Length = 493

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 32/190 (16%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265
           K  + IRN    + I+G++NAGKSSL N L +  V    A+   +  TTR   T D    
Sbjct: 263 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 318

Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           G +  ++DT G +R    D+V       E+  +    L V +AD    L ++++ + +  
Sbjct: 319 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 378

Query: 317 ---PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                NI  I +  K D         L ST+   Y  L+S+ TGEG ++L+  I+ +L  
Sbjct: 379 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGTDKLVEAIEDVLPI 436

Query: 365 KFKKLPFSIP 374
             +++   IP
Sbjct: 437 PSQRVDVVIP 446


>gi|91201100|emb|CAJ74159.1| strongly similar to GTP-binding protein Era [Candidatus Kuenenia
           stuttgartiensis]
          Length = 301

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + ++G  N GKS+L N      ++IVT  P TTR  +   L  E Y +   DT G
Sbjct: 11  RSGY-VAVIGEPNVGKSTLINNYMGCKLSIVTHKPQTTRKKIMGILTKEDYQIIFFDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           I E    ++K  +K  +  ++ AD++L++ E
Sbjct: 70  IIEPTYELQKYMVKTAYSVIKEADILLMMVE 100


>gi|315658242|ref|ZP_07911114.1| ribosome-associated GTPase EngA [Staphylococcus lugdunensis M23590]
 gi|315496571|gb|EFU84894.1| ribosome-associated GTPase EngA [Staphylococcus lugdunensis M23590]
          Length = 436

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD +  +   +     + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDTEYTYDNQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLIV 264



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + ++ AD+I+ +
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFM 89


>gi|302550423|ref|ZP_07302765.1| ribosome-associated GTPase EngA [Streptomyces viridochromogenes DSM
           40736]
 gi|302468041|gb|EFL31134.1| ribosome-associated GTPase EngA [Streptomyces viridochromogenes DSM
           40736]
          Length = 498

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +I ++G  N GKSSL N +A ++  +V ++ GTTRD +   ++L G   K  DTAGIR+
Sbjct: 236 RIALIGRPNVGKSSLLNKVANEERVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRK 294



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G
Sbjct: 61  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGG 115


>gi|237756936|ref|ZP_04585406.1| GTP-binding protein EngA [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237690908|gb|EEP60046.1| GTP-binding protein EngA [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 209

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +++ I+G  N GKSSLFN +  +  AIV D+PG TRD +    +  G   ++ DT G
Sbjct: 2   FRVAIVGRPNVGKSSLFNRIIGQRKAIVEDVPGVTRDRIVSTAEWRGVKFEVVDTGG 58


>gi|331091761|ref|ZP_08340593.1| hypothetical protein HMPREF9477_01236 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402660|gb|EGG82227.1| hypothetical protein HMPREF9477_01236 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 399

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 20/171 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I I G  N GKSSL NAL  + ++IV+D  GTT D +   ++L   G +V I DTA
Sbjct: 10  NRIHIGIFGRRNCGKSSLINALTGQALSIVSDTKGTTTDPVLKAMELLPIGPVVFI-DTA 68

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL---------LKEINSKKEISFPKNIDFIFIG 326
           G+ +  ++ +   I +T+  +   D+ LL         +++ N  K+I   K I ++ I 
Sbjct: 69  GLDDEGELGQLR-ITKTYQMLNKTDIALLVIDSSVGMTVEDENILKKIQ-DKQIPYLIIH 126

Query: 327 TKSDLYSTYT----EEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPF 371
            K DL    T    E  +H   IS+ TG  + EL  KI ++L       P 
Sbjct: 127 NKCDLPEKSTLSLAEHTEHTIEISAKTGFHIRELKEKISTLLPKDVNGTPI 177


>gi|282854031|ref|ZP_06263368.1| GTP-binding protein HflX [Propionibacterium acnes J139]
 gi|282583484|gb|EFB88864.1| GTP-binding protein HflX [Propionibacterium acnes J139]
          Length = 483

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 32/190 (16%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265
           K  + IRN    + I+G++NAGKSSL N L +  V    A+   +  TTR   T D    
Sbjct: 253 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 308

Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKK---- 312
           G +  ++DT G +R    D+V       E+  +    L V +AD    L ++++ +    
Sbjct: 309 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 368

Query: 313 --------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                   EI     ID +   T   L ST+   Y  L+S+ TGEG ++L+  I+ +L  
Sbjct: 369 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGTDKLVEAIEDVLPI 426

Query: 365 KFKKLPFSIP 374
             +++   IP
Sbjct: 427 PSQRVDVVIP 436


>gi|239631541|ref|ZP_04674572.1| GTP-binding protein EngA [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526006|gb|EEQ65007.1| GTP-binding protein EngA [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 435

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NA+  ++  IV+ I GTTRD +    +       + DTAGIR+ 
Sbjct: 176 KFSLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEAVDETFTMIDTAGIRKR 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             +    EK  + R    ++ +D++L +  IN+++ I
Sbjct: 236 GKVYENTEKYAVMRALRAIDRSDVVLFV--INAEEGI 270



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   LAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGTSEWLGKEFAVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           +    +   +  + ++ AD+IL L +I S
Sbjct: 66  EPFLAQIKDQAEIAIDEADVILFLADIES 94


>gi|116494866|ref|YP_806600.1| GTP-binding protein EngA [Lactobacillus casei ATCC 334]
 gi|122263716|sp|Q039G4|DER_LACC3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|116105016|gb|ABJ70158.1| Predicted GTPase [Lactobacillus casei ATCC 334]
          Length = 435

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NA+  ++  IV+ I GTTRD +    +       + DTAGIR+ 
Sbjct: 176 KFSLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEAVDETFTMIDTAGIRKR 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             +    EK  + R    ++ +D++L +  IN+++ I
Sbjct: 236 GKVYENTEKYAVMRALRAIDRSDVVLFV--INAEEGI 270



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   LAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGKSEWLGKEFAVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           +    +   +  + ++ AD+IL L +I S
Sbjct: 66  EPFLAQIKDQAEIAIDEADVILFLADIES 94


>gi|167748931|ref|ZP_02421058.1| hypothetical protein ANACAC_03712 [Anaerostipes caccae DSM 14662]
 gi|167651553|gb|EDR95682.1| hypothetical protein ANACAC_03712 [Anaerostipes caccae DSM 14662]
          Length = 395

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 81/153 (52%), Gaps = 18/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           I + G  NAGKSS+ NAL  +++AIV+D+ GTT D +   ++L   G +V I DT G+ +
Sbjct: 14  IALFGRRNAGKSSIVNALTGQELAIVSDVKGTTTDPVFKAMELLPLGPVVMI-DTPGLDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL 331
             ++ EK  +K+    +   D+ L++ +  +          ++   + + ++ +  K+DL
Sbjct: 73  EGELGEKR-VKKAKEVLRKTDIALVIADAETGITEFEQGILDLIRERKLPYLIVYNKTDL 131

Query: 332 YS-TYTEEYDH--LISSFTGE---GLEELINKI 358
                 E+ DH   +S+ T E   GL+E I K+
Sbjct: 132 AGRVRAEDNDHACFVSAVTKEGIFGLKEAIGKL 164


>gi|157692783|ref|YP_001487245.1| GTP-binding protein EngA [Bacillus pumilus SAFR-032]
 gi|166920097|sp|A8FEL8|DER_BACP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157681541|gb|ABV62685.1| GTPase [Bacillus pumilus SAFR-032]
          Length = 436

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 25/168 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI-SFPKNIDFIFIGTK------------ 328
           +    +   +  + ++ AD+I+ +  +N +  + S  + +  I   TK            
Sbjct: 66  EPFLAQIRHQAEIAMDEADVIIFM--VNGRDGVTSADEEVAKILYRTKKPVVLAVNKLDN 123

Query: 329 ----SDLYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
               SD+Y  Y   +   + IS   G GL +L++ +    +  FK LP
Sbjct: 124 PEMRSDVYDFYALGFGEPYPISGTHGLGLGDLLDAV----AEHFKNLP 167



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  +D  IV++I GTTRD +            I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNAMLGEDRVIVSNIAGTTRDAVDTMFAYNQRDFVIVDTAGMRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    ++ +D++ ++
Sbjct: 240 YETTEKYSVLRALKAIDRSDVVAVV 264


>gi|37999702|sp|Q8G6A8|DER_BIFLO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|23325955|gb|AAN24555.1| probable GTP binding protein [Bifidobacterium longum NCC2705]
          Length = 463

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA+++ A+V D+ GTTRD +   +++D E +L    DTAGI+
Sbjct: 203 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 260

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
                +   E     RT   +E  +L L+L
Sbjct: 261 RRQHKLTGAEYYSSLRTQAAIERCELALIL 290



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 29  LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 88

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E     +  + V  AD ++ +
Sbjct: 89  EGIESAIASQAQVAVTLADAVVFV 112


>gi|162447731|ref|YP_001620863.1| EngA family GTP-binding protein [Acholeplasma laidlawii PG-8A]
 gi|161985838|gb|ABX81487.1| GTP-binding protein, EngA family [Acholeplasma laidlawii PG-8A]
          Length = 438

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           +LG  N GKSSL NA+  ++  IV+DI GTT D +      +     I DTAGI++   +
Sbjct: 178 VLGRPNVGKSSLVNAIIGEERVIVSDISGTTTDAIDTTFTKDKQKYTIIDTAGIKKRGKV 237

Query: 284 VE---KEGIKRTFLEVENADLILLL 305
            E   K  + R    +E +D+ LL+
Sbjct: 238 YENLDKYSVLRAMTALERSDIALLV 262



 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + + I+G  N GKSSLFN +  +  +I  D+ G TRD +    +       + DT GI
Sbjct: 3   FTVAIVGRPNVGKSSLFNRIIGERFSITDDVAGVTRDRIYAQAEWLTKRFSLIDTGGI 60


>gi|114771865|ref|ZP_01449258.1| GTP-binding protein EngA [alpha proteobacterium HTCC2255]
 gi|114547681|gb|EAU50572.1| GTP-binding protein EngA [alpha proteobacterium HTCC2255]
          Length = 497

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + ++G  N GKS+LFN L  + +A+V D PG TRD+   D  +      + DTAG+ E
Sbjct: 3   FTVALVGRPNVGKSTLFNRLVGRRLALVDDQPGVTRDLREGDAKMGPVKFTVIDTAGLEE 62

Query: 280 TDD 282
             D
Sbjct: 63  ATD 65



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 40/66 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  NAGKS+L N +  ++  +     G TRD ++I+ D +   +++ DTAGIR+ 
Sbjct: 202 QISIIGRPNAGKSTLVNQILGQERMLTGPEAGITRDSISINHDWDDVPMRLWDTAGIRKK 261

Query: 281 DDIVEK 286
             + EK
Sbjct: 262 AKVQEK 267


>gi|325290811|ref|YP_004266992.1| iron-only hydrogenase maturation protein HydF [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966212|gb|ADY56991.1| iron-only hydrogenase maturation protein HydF [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 417

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I + G  NAGKSSL NAL  +D+A+V+D+PGTT D +   ++ L    V + DTAG+ + 
Sbjct: 12  ISLFGRRNAGKSSLINALTNQDIALVSDVPGTTTDPVYKAMEILPIGPVMLIDTAGLDDV 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
             + E   ++++   ++  D+ LL+
Sbjct: 72  GSLGELR-VRKSRQVLDKTDVTLLV 95


>gi|307328928|ref|ZP_07608097.1| ribosome-associated GTPase EngA [Streptomyces violaceusniger Tu
           4113]
 gi|306885438|gb|EFN16455.1| ribosome-associated GTPase EngA [Streptomyces violaceusniger Tu
           4113]
          Length = 487

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           +I ++G  N GKSSL N +A ++  +V ++ GTTRD +   ++L G   K  DTAGIR
Sbjct: 226 RIALVGRPNVGKSSLLNKVANEERVVVNELAGTTRDPVDEIIELGGTTWKFVDTAGIR 283



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G
Sbjct: 52  LAVVGRPNVGKSTLVNRILGRREAVVEDRPGVTRDRVTYEAEWSGRRFKVVDTGG 106


>gi|239932165|ref|ZP_04689118.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672]
 gi|291440533|ref|ZP_06579923.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672]
 gi|291343428|gb|EFE70384.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672]
          Length = 496

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
            + ++L+ +L +  D  +       G  +    ++ ++G  N GKSSL N +A ++  +V
Sbjct: 206 GTGDMLDQVLEVLPDAPAQT----FGTAVGGPRRVALIGRPNVGKSSLLNKVAGEERVVV 261

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ GTTRD +   ++L G   K  DTAGIR+
Sbjct: 262 NELAGTTRDPVDEMIELGGKTWKFVDTAGIRK 293



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G  +  
Sbjct: 61  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 120

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     +    +E AD ++ +
Sbjct: 121 LGIDASVAAQAEYAIEAADAVVFV 144


>gi|191638373|ref|YP_001987539.1| GTP-binding protein EngA [Lactobacillus casei BL23]
 gi|301066427|ref|YP_003788450.1| putative GTPase [Lactobacillus casei str. Zhang]
 gi|238693036|sp|B3WE80|DER_LACCB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|190712675|emb|CAQ66681.1| GTP-binding protein engA [Lactobacillus casei BL23]
 gi|300438834|gb|ADK18600.1| Predicted GTPase [Lactobacillus casei str. Zhang]
 gi|327382401|gb|AEA53877.1| GTPase family protein [Lactobacillus casei LC2W]
 gi|327385602|gb|AEA57076.1| GTPase family protein [Lactobacillus casei BD-II]
          Length = 435

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NA+  ++  IV+ I GTTRD +    +       + DTAGIR+ 
Sbjct: 176 KFSLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEAVDETFTMIDTAGIRKR 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             +    EK  + R    ++ +D++L +  IN+++ I
Sbjct: 236 GKVYENTEKYAVMRALRAIDRSDVVLFV--INAEEGI 270



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   LAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGTSEWLGKEFAVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           +    +   +  + ++ AD+IL L +I S
Sbjct: 66  EPFLAQIKDQAEIAIDEADVILFLADIES 94


>gi|289550746|ref|YP_003471650.1| GTP-binding protein EngA [Staphylococcus lugdunensis HKU09-01]
 gi|289180278|gb|ADC87523.1| GTP-binding protein EngA [Staphylococcus lugdunensis HKU09-01]
          Length = 436

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD +  +   +     + DTAG+R+ 
Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDTEYTYDNQDYVLIDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    +E ++++L++
Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLIV 264



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + +   +  + ++ AD+I+ +
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFM 89


>gi|227542010|ref|ZP_03972059.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182225|gb|EEI63197.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 537

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           +VL+ IL L  D     S      I     ++ ++G  N GKSSL N L+ ++ ++V ++
Sbjct: 247 DVLDQILELFPDEPRQTS------ITEGPRRVALVGKPNVGKSSLLNKLSNEERSVVDNV 300

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            GTT D +   + LEG L K  DTAG+R
Sbjct: 301 AGTTVDPVDSLVQLEGGLWKFIDTAGLR 328



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 74/164 (45%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N    +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 99  VAVVGRPNVGKSSLVNRFLGRREAVVEDTPGVTRDRVSYLAEWNGQRFWVQDTGGWDPDA 158

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKSDLYS 333
             +     ++  + +E AD+I+++ + N   +  +    +N     +  I +  K D   
Sbjct: 159 KGIHAAIARQAEVAMETADVIVMVVDTNVGITASDEVMARNLQRSDVPVILVANKVDSPK 218

Query: 334 TYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKK 368
              E         +Y + +S+  G+G  +++++I  +  ++ ++
Sbjct: 219 QEAETAEFWGLGLDYPYPVSAQHGKGGADVLDQILELFPDEPRQ 262


>gi|194016775|ref|ZP_03055388.1| ribosome-associated GTPase EngA [Bacillus pumilus ATCC 7061]
 gi|194011381|gb|EDW20950.1| ribosome-associated GTPase EngA [Bacillus pumilus ATCC 7061]
          Length = 436

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 25/168 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI-SFPKNIDFIFIGTK------------ 328
           +    +   +  + ++ AD+I+ +  +N +  + S  + +  I   TK            
Sbjct: 66  EPFLAQIRHQAEIAMDEADVIIFM--VNGRDGVTSADEEVAKILYRTKKPVVLAVNKLDN 123

Query: 329 ----SDLYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
               SD+Y  Y   +   + IS   G GL +L++ +    +  FK LP
Sbjct: 124 PEMRSDVYDFYALGFGEPYPISGTHGLGLGDLLDAV----AEHFKNLP 167



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  +D  IV++I GTTRD +            I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNAMLGEDRVIVSNIAGTTRDAVDTMFTYNQRDFVIVDTAGMRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    ++ +D++ ++
Sbjct: 240 YETTEKYSVLRALKAIDRSDVVAVV 264


>gi|78223518|ref|YP_385265.1| GTP-binding protein Era [Geobacter metallireducens GS-15]
 gi|123571481|sp|Q39T84|ERA_GEOMG RecName: Full=GTPase Era
 gi|78194773|gb|ABB32540.1| GTP-binding protein Era [Geobacter metallireducens GS-15]
          Length = 298

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 22/169 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N +  + + I +D P TTR+ +    ++ G  +   DT G
Sbjct: 7   RSGF-VSIIGRPNVGKSTLLNRILGEKIVITSDKPQTTRNRIQGIHNVPGAQIVFIDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEI-------SFP-----KN 319
           I +    + K  ++     +   DL+L L E N K     +EI       + P       
Sbjct: 66  IHQARSRLNKYMVEVALSAIREVDLVLFLVEANQKPGEQEQEIIDVLAGATAPVFLVINK 125

Query: 320 IDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSN 364
           +D    G   +  + Y + Y       IS+ TG+G++ L+  ++  L  
Sbjct: 126 VDLTEKGAVLERIAAYKDRYPFREIVPISAGTGDGVDHLVELVRKALPQ 174


>gi|297568834|ref|YP_003690178.1| ribosome-associated GTPase EngA [Desulfurivibrio alkaliphilus AHT2]
 gi|296924749|gb|ADH85559.1| ribosome-associated GTPase EngA [Desulfurivibrio alkaliphilus AHT2]
          Length = 487

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G  N GKSSL N L  ++  +V+++PGTTRD +   L        + DTAGIR   
Sbjct: 229 VAFIGRPNVGKSSLINRLLGEERMVVSNLPGTTRDSVDTLLTRADKKYLLIDTAGIRRKG 288

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   VEK  + R    +E  DL L++
Sbjct: 289 KVHEKVEKFSVLRALRTLERCDLALIV 315



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 13/142 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSLFN LA    AIV   PG TRD     +        + DT G+ E+D
Sbjct: 52  VALVGRPNVGKSSLFNRLAGSRKAIVDPTPGVTRDRHYEKITWNDRRFILVDTGGL-ESD 110

Query: 282 DIVEKEGI--KRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY---- 335
              E   +  ++T   V  AD++L L +    +E   P + + + I  +S     Y    
Sbjct: 111 TTTEINRLIQEQTSQAVAEADVVLFLLD---GREGILPDDQEVVEILRRSGKKVFYLINK 167

Query: 336 ---TEEYDHLISSFTGEGLEEL 354
               E+   L+ +F   G+EEL
Sbjct: 168 IDAPEQAAKLLPTFYELGVEEL 189


>gi|227488997|ref|ZP_03919313.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091073|gb|EEI26385.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 537

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           +VL+ IL L  D     S      I     ++ ++G  N GKSSL N L+ ++ ++V ++
Sbjct: 247 DVLDQILELFPDEPRQTS------ITEGPRRVALVGKPNVGKSSLLNKLSNEERSVVDNV 300

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            GTT D +   + LEG L K  DTAG+R
Sbjct: 301 AGTTVDPVDSLVQLEGGLWKFIDTAGLR 328



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 74/164 (45%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N    +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 99  VAIVGRPNVGKSSLVNRFLGRREAVVEDTPGVTRDRVSYLAEWNGQRFWVQDTGGWDPDA 158

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKSDLYS 333
             +     ++  + +E AD+I+++ + N   +  +    +N     +  I +  K D   
Sbjct: 159 KGIHAAIARQAEVAMETADVIVMVVDTNVGITASDEVMARNLQRSDVPVILVANKVDSPK 218

Query: 334 TYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKK 368
              E         +Y + +S+  G+G  +++++I  +  ++ ++
Sbjct: 219 QEAETAEFWGLGLDYPYPVSAQHGKGGADVLDQILELFPDEPRQ 262


>gi|307543972|ref|YP_003896451.1| GTP-binding protein EngA [Halomonas elongata DSM 2581]
 gi|307215996|emb|CBV41266.1| GTP-binding protein EngA [Halomonas elongata DSM 2581]
          Length = 467

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD    +  L G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGNGMLGGKAYTVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++    +++   ++ AD++L +
Sbjct: 65  EGIDAAMAEQSLQAIDEADIVLFM 88



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G  I ++G  N GKS+L N L  +D  +V D  GTTRD + I  +  G    + DTAG+
Sbjct: 176 SGIHIGVIGRPNVGKSTLVNRLLGEDRVVVFDEAGTTRDAIEIPFERRGKPYVLVDTAGV 235

Query: 278 RETDDIVE 285
           R   ++ E
Sbjct: 236 RRRKNVRE 243


>gi|297568490|ref|YP_003689834.1| GTP-binding protein Era [Desulfurivibrio alkaliphilus AHT2]
 gi|296924405|gb|ADH85215.1| GTP-binding protein Era [Desulfurivibrio alkaliphilus AHT2]
          Length = 308

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 25/192 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L  + ++IV+  P TTR+ +    +     +   DT G+ +  
Sbjct: 15  VALVGPPNAGKSTLLNNLLGQKISIVSPKPQTTRNRVLGVFNQPTRQIVFLDTPGLHQGR 74

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
             +  E +K     V   D +  + +++S +  S P+            N+  + +  K 
Sbjct: 75  SRLNSEMVKIARRTVSEVDAVAYMIDVSSPEADSRPEQRRQAGQLLQRANLPALLLCNKI 134

Query: 330 D---------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           D         + + + E Y       +S+ +GEG E L++++  +L    +  P  IP+ 
Sbjct: 135 DQVGKEKLLPVIAAWQEVYPFAAIIPLSALSGEGQETLLDELTRLLPRGPRLFPEDIPTD 194

Query: 377 KRHLYHLSQTVR 388
               +   + +R
Sbjct: 195 ASERFLCGEIIR 206


>gi|302561447|ref|ZP_07313789.1| ribosome-associated GTPase EngA [Streptomyces griseoflavus Tu4000]
 gi|302479065|gb|EFL42158.1| ribosome-associated GTPase EngA [Streptomyces griseoflavus Tu4000]
          Length = 496

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            G  +    ++ ++G  N GKSSL N +A ++  +V ++ GTTRD +   ++L G   K 
Sbjct: 226 FGSAVGGPRRVALIGRPNVGKSSLLNKVAGEERVVVNELAGTTRDPVDEMIELGGKTWKF 285

Query: 272 SDTAGIRE 279
            DTAGIR+
Sbjct: 286 VDTAGIRK 293



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G  +  
Sbjct: 61  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 120

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     +    +E AD ++ +
Sbjct: 121 LGIDASVAAQAEYAIEAADAVVFV 144


>gi|256827190|ref|YP_003151149.1| GTP-binding protein Era [Cryptobacterium curtum DSM 15641]
 gi|256583333|gb|ACU94467.1| GTP-binding protein Era [Cryptobacterium curtum DSM 15641]
          Length = 315

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 21/170 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L NA+  K VAI +D   TTR         + + + + DT GI +  
Sbjct: 25  VTLVGRPNAGKSTLINAIMGKKVAITSDTAQTTRHRFRAVKTTDTFQLVLIDTPGIHKPH 84

Query: 282 DIVEKEGIKRTFLEVENADLILLL----KEINSKKE----ISFPKNIDFIFIGTKSDLYS 333
           D + +E  +     ++  D++  L    K + +  E    I  P     + + TK DL  
Sbjct: 85  DALGQELNESAIQALDGIDVVAFLVDGTKPVGTGDEWVSRIIAPIKAKKVLVITKIDLID 144

Query: 334 TYT-----------EEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLP 370
             T            ++D  I  S+ +GEG+E  +NK+ S+L    +  P
Sbjct: 145 QDTIDAQMEAASALADWDAKIQLSAVSGEGVEFFLNKMASLLPVGPRWFP 194


>gi|257452783|ref|ZP_05618082.1| GTP-binding protein Era [Fusobacterium sp. 3_1_5R]
 gi|257466849|ref|ZP_05631160.1| GTP-binding protein Era [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917997|ref|ZP_07914237.1| GTP-binding protein era [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059324|ref|ZP_07923809.1| GTP-binding protein era [Fusobacterium sp. 3_1_5R]
 gi|313685000|gb|EFS21835.1| GTP-binding protein era [Fusobacterium sp. 3_1_5R]
 gi|313691872|gb|EFS28707.1| GTP-binding protein era [Fusobacterium gonidiaformans ATCC 25563]
          Length = 296

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +G      DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLMNKLVSEKVAIVSDKAGTTRDNIKGILNFQGKQYIFIDTPGIHKPK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            ++ +   +     +++AD IL L  ++  +EIS
Sbjct: 66  HLLGEYMTEIAIRSLKDADAILFL--LDGTQEIS 97


>gi|293192791|ref|ZP_06609686.1| ribosome-associated GTPase EngA [Actinomyces odontolyticus F0309]
 gi|292820038|gb|EFF79036.1| ribosome-associated GTPase EngA [Actinomyces odontolyticus F0309]
          Length = 517

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 7/88 (7%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           +V+ ++L  ++ ++S +  G          ++ ++G  N GKSSL NALA  +  +V ++
Sbjct: 235 DVVMEVLPTESAVASALPSG-------GPRRVALVGRPNVGKSSLLNALAGGERVVVNEL 287

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            GTTRD +   ++L+G      DTAGIR
Sbjct: 288 AGTTRDPVDELIELDGRSWWFVDTAGIR 315



 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 84  LAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYPAEWAGRDFTLVDTGGWE--- 140

Query: 282 DIVEKEGIKRTFLE-----VENADLILLL 305
             ++ +G+ R+  E     V+ AD ++L+
Sbjct: 141 --IDVKGLDRSVAEQAEIAVDLADAVVLV 167


>gi|223986781|ref|ZP_03636764.1| hypothetical protein HOLDEFILI_04087 [Holdemania filiformis DSM
           12042]
 gi|223961245|gb|EEF65774.1| hypothetical protein HOLDEFILI_04087 [Holdemania filiformis DSM
           12042]
          Length = 382

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 23/171 (13%)

Query: 221 KIVILGHSNAGKSSLFNAL-------AKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKIS 272
           ++ ++G+SNAGKSSL NAL         K VA    +  T  D  T  + L G   + +S
Sbjct: 195 RVCLIGYSNAGKSSLMNALLSLRSISPAKQVASADQLFATL-DSATRRIKLAGRAEMLLS 253

Query: 273 DTAG-IRETDDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEIS-----------FPKN 319
           DT G +R+  D +  +  + T  E++ ADL++ ++   + + E+               +
Sbjct: 254 DTVGFVRDLPDFL-LDAFESTLQEIQEADLLMEVIDASDPQWELQHEIVMRTLHRLHAAH 312

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
           ID + I  K+D    +  +   L+S  TG+GL+ELI  + S L+   +  P
Sbjct: 313 IDRMRIYNKADQVPQWDRKDGLLLSCLTGQGLQELIAGLISRLNLTDRAFP 363


>gi|209885224|ref|YP_002289081.1| GTP-binding proten HflX [Oligotropha carboxidovorans OM5]
 gi|209873420|gb|ACI93216.1| GTP-binding proten HflX [Oligotropha carboxidovorans OM5]
          Length = 437

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 31/177 (17%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y++V L G++NAGKS+LFN L + DV    D+   T D     L L  G    ISDT
Sbjct: 200 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRALRLPHGGKAMISDT 258

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF----IGTKS- 329
            G       +     + T  EV  AD+IL +++I+ +   +  +++D +     IGT+S 
Sbjct: 259 VGFISDLPTMLVAAFRATLEEVIEADVILHVRDISHEDAEAQERDVDHVLRQLGIGTESG 318

Query: 330 ----------DLYSTYTEE----------YDH---LISSFTGEGLEELINKIKSILS 363
                     D +S    E           DH   L+S+ TGEG++ L+  I+  L+
Sbjct: 319 HRIIEVWNKIDCFSPEERENLARIAARRPADHPCFLVSAETGEGIDALLAAIEERLA 375


>gi|85057390|ref|YP_456306.1| GTP-binding protein Era [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789495|gb|ABC65227.1| GTP-binding protein Era [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 295

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I ILG  N GKS+L NAL ++ VAI +  P TTR+ ++ I  D     + + DT GI + 
Sbjct: 12  IAILGRPNVGKSTLLNALTQQKVAITSAKPQTTRNKIIGICHDSNAQYIFV-DTPGINQY 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
             ++ ++     F  +++ DLIL L +
Sbjct: 71  KHLLNQKMNNIVFQSIKDVDLILFLTD 97


>gi|301647089|ref|ZP_07246913.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|301074750|gb|EFK89556.1| conserved hypothetical protein [Escherichia coli MS 146-1]
          Length = 290

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   IS HI +  L ++ R+     I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYPISRHILE-HLRKLTRHEPVPGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|225619005|ref|YP_002720231.1| GTP-binding protein [Brachyspira hyodysenteriae WA1]
 gi|225213824|gb|ACN82558.1| GTP-binding protein [Brachyspira hyodysenteriae WA1]
          Length = 397

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 2/89 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  NAGKSS+ NA+A + +AIV+D  GTT D +   +++ G     I DTAG
Sbjct: 11  NRTHIAIFGRRNAGKSSIINAIANQYIAIVSDTAGTTTDPVKKAIEINGIGACVIVDTAG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
             +  D+     I+RT   +E++D+ LL+
Sbjct: 71  FDDEGDLGALR-IERTKKIMESSDIALLV 98


>gi|126657428|ref|ZP_01728587.1| GTP-binding protein Era [Cyanothece sp. CCY0110]
 gi|126621415|gb|EAZ92127.1| GTP-binding protein Era [Cyanothece sp. CCY0110]
          Length = 314

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 26/173 (15%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKS+L N L  + +AI + +  TTR+ L   L  E   +   DT GI +    
Sbjct: 27  IIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLQGILTTEQAQIIFVDTPGIHKPHHT 86

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTKSDL 331
           + K  +K   + + + D+IL + + + K            K I+ P  +       +S+ 
Sbjct: 87  LGKIIVKNAKMAINSVDVILFVVDSSVKSGGGDRYIIDLLKTINQPVILGLNKQDQQSED 146

Query: 332 YSTYTEEYDHLISSF----------TGEGLEELINKIKSILSNKFKKLPFSIP 374
           Y    E Y +LI S+          TG GLE L N     L  K    P+  P
Sbjct: 147 YQQIDESYTNLIESYHWPIIKFSALTGNGLETLQNT----LIEKLDPGPYYYP 195


>gi|329114596|ref|ZP_08243355.1| GTP-binding protein EngA [Acetobacter pomorum DM001]
 gi|326696076|gb|EGE47758.1| GTP-binding protein EngA [Acetobacter pomorum DM001]
          Length = 479

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +VI G  N GKS+LFN L  +  A+V D PG TRD       + G  V++ DTAG+ E 
Sbjct: 22  VVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEGVALIRGRYVRLIDTAGLEEA 80



 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L NAL  ++  I     G TRD + + L       +I DTAG+R+ 
Sbjct: 214 RVAIVGRPNAGKSTLMNALLGEERMITGPEAGLTRDSIAVTLRDGDDTFEIVDTAGLRKK 273

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305
              D+ +EK  +      ++ A++ +L+
Sbjct: 274 ARIDESLEKMSVSAAIEALKMAEVAVLV 301


>gi|205373827|ref|ZP_03226629.1| GTP-binding protein EngA [Bacillus coahuilensis m4-4]
          Length = 262

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 35/59 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  IV+DI GTTRD +       G    I DTAGIR+
Sbjct: 177 KFSLIGRPNVGKSSLVNAILGEDRVIVSDIEGTTRDAIDSIFTFNGSPYVIIDTAGIRK 235



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + ++IV D+PG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSGEWLNHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +   ++  ++  + ++ AD+I+ +
Sbjct: 66  EPFLEQIRQQAEIAIDEADVIIFM 89


>gi|118595142|ref|ZP_01552489.1| ferrous iron transport protein B [Methylophilales bacterium
           HTCC2181]
 gi|118440920|gb|EAV47547.1| ferrous iron transport protein B [Methylophilales bacterium
           HTCC2181]
          Length = 581

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI +LG  N GKS+LFN ++    A V + PG T D+ ++   L G L ++ D  GI + 
Sbjct: 3   KIALLGMPNTGKSTLFNQISGSS-AKVGNWPGITVDLYSVKTLLNGQLTELIDLPGIYDL 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
               E E +  TFL+    D +L +  INS +
Sbjct: 62  KGYSEDEKVVHTFLDKNKIDQVLFV--INSTQ 91


>gi|281358827|ref|ZP_06245299.1| small GTP-binding protein [Victivallis vadensis ATCC BAA-548]
 gi|281314695|gb|EFA98736.1| small GTP-binding protein [Victivallis vadensis ATCC BAA-548]
          Length = 414

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 6/88 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
           +I + G +N+GKSS  N +A +DVAI + +PGTT DV+   ++L     V   DTAG+  
Sbjct: 11  QIAVAGRTNSGKSSFLNLIAGQDVAITSPVPGTTTDVVEKPMELRPLGPVLFLDTAGV-- 68

Query: 280 TDDIVEKEG--IKRTFLEVENADLILLL 305
            DD     G  ++R+      AD++LL+
Sbjct: 69  -DDETALGGRRVERSERAFNRADVLLLV 95


>gi|303326575|ref|ZP_07357018.1| GTP-binding protein Era [Desulfovibrio sp. 3_1_syn3]
 gi|302864491|gb|EFL87422.1| GTP-binding protein Era [Desulfovibrio sp. 3_1_syn3]
          Length = 307

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 3/105 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L NAL  + V IVT  P TTR+ +   L  E   V   DT G
Sbjct: 7   RCGW-VALMGPPNAGKSTLLNALLGQKVTIVTPKPQTTRNQIVGILTDEEAQVIFMDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID 321
           + +    + K  I+  +  +  AD+I+ +  ++S   I  P+ +D
Sbjct: 66  LTQVRGRLSKTMIQAVWQSLGQADVIMPI--LDSHLYIRHPEFLD 108


>gi|237800048|ref|ZP_04588509.1| GTP-binding protein Der [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022903|gb|EGI02960.1| GTP-binding protein Der [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 222

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++++  +++ L +E AD++L L
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFL 88


>gi|51246791|ref|YP_066675.1| GTP-binding protein (EngA) [Desulfotalea psychrophila LSv54]
 gi|50877828|emb|CAG37668.1| Probable GTP-binding protein (EngA) [Desulfotalea psychrophila
           LSv54]
          Length = 446

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           L + +S  I    + + + +G  K+   G  N GKSS+ N +  +D  IV++I GTTRD 
Sbjct: 160 LMDALSETIEASTMSQDLPDGTVKVAFFGRPNVGKSSMINRILGEDRMIVSEISGTTRDS 219

Query: 258 LTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           +   L    Y   + DTAGIR   +T + +EK  I ++   +E  D+ ++L
Sbjct: 220 VDTLLTHGNYSYLLIDTAGIRRKGKTTEKLEKFSILKSLGALERCDVAVIL 270



 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + ++G  N GKS+LFN + K   A+V   PG TRD     +      + + DT GI +  
Sbjct: 9   VALVGRPNVGKSTLFNRITKSRNALVDPTPGVTRDRQYERVVWNNRAMILVDTGGIDDNP 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
           +D++      +    +E AD++L L +
Sbjct: 69  EDVLVPHIRDQALAAIEEADIVLFLMD 95


>gi|293363515|ref|ZP_06610271.1| GTP-binding protein Era [Mycoplasma alligatoris A21JP2]
 gi|292552864|gb|EFF41618.1| GTP-binding protein Era [Mycoplasma alligatoris A21JP2]
          Length = 290

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL NA+   +++IVT  P TTRD +    + EGY V  +DT GI +  + 
Sbjct: 8   IIGRPNVGKSSLLNAILSYNLSIVTATPQTTRDQIMGVYNEEGYQVIFTDTPGIHKPINK 67

Query: 284 VEKEGIKRTFLEVENADLILLL 305
           +     K  +  ++  DL++ L
Sbjct: 68  LGDALNKNAYDTLKENDLVIFL 89


>gi|281206920|gb|EFA81104.1| GTP-binding protein engA [Polysphondylium pallidum PN500]
          Length = 795

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 5/99 (5%)

Query: 212 LGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLV 269
           LG+  +N   KI I+G  NAGKSSL N +  ++ AIV+D+ GTT D +    L  E + +
Sbjct: 290 LGDPQQNTSIKISIVGQPNAGKSSLLNQIIGEERAIVSDVAGTTHDPVDCQFLWRENHDL 349

Query: 270 KISDTAGIRE--TDDI-VEKEGIKRTFLEVENADLILLL 305
            + DTAGIR   T  + +EK  +      +E + ++L++
Sbjct: 350 TLIDTAGIRRRSTHKVGLEKSSVLWAMKAIERSQVVLMV 388



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I I+G  N GKS+LFN + +    A+V +IPGTTRD    D  L G   ++ DT G+
Sbjct: 114 IAIIGKPNVGKSTLFNRVVQGGRQALVENIPGTTRDRYYSDAFLYGRQFQLVDTGGL 170


>gi|189182921|ref|YP_001936706.1| GTP-binding protein Era [Orientia tsutsugamushi str. Ikeda]
 gi|189179692|dbj|BAG39472.1| GTP-binding protein Era [Orientia tsutsugamushi str. Ikeda]
          Length = 306

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 20/158 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ILG  N+GKS+L N L  + ++IVT    TTR  +T  +      +   DT GI +    
Sbjct: 19  ILGMPNSGKSTLLNRLIGQKISIVTPKVQTTRSAITGIVTYNLTQLIFIDTPGIFQPKKT 78

Query: 284 VEKEGIKRTFLEVENADLILLL----KEINSKKEISFPK----NIDFIFIGTKSDL-YST 334
           +EK  ++  +  +  AD+ LL+    K++N + +I   +     I F  I  K D+  + 
Sbjct: 79  LEKAMVRCAWTSIVGADIALLIIDITKKLNEQIQIILTRLISQKIKFCIILNKIDICVNN 138

Query: 335 YTEEYDHL-----------ISSFTGEGLEELINKIKSI 361
            T+  + L           IS+  G G++EL+  I +I
Sbjct: 139 LTQLMNDLKQLSINAKIIAISALNGNGVQELLQYISTI 176


>gi|258542805|ref|YP_003188238.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-01]
 gi|256633883|dbj|BAH99858.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-01]
 gi|256636942|dbj|BAI02911.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-03]
 gi|256639995|dbj|BAI05957.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-07]
 gi|256643051|dbj|BAI09006.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-22]
 gi|256646106|dbj|BAI12054.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-26]
 gi|256649159|dbj|BAI15100.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-32]
 gi|256652146|dbj|BAI18080.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655203|dbj|BAI21130.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-12]
          Length = 472

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +VI G  N GKS+LFN L  +  A+V D PG TRD       + G  V++ DTAG+ E 
Sbjct: 15  VVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEGVALIRGRYVRLIDTAGLEEA 73



 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L NAL  ++  I     G TRD + + L       +I DTAG+R+ 
Sbjct: 207 RVAIVGRPNAGKSTLMNALLGEERMITGPEAGLTRDSIAVTLKDGDDTFEIVDTAGLRKK 266

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305
              D+ +EK  +      ++ A++ +L+
Sbjct: 267 ARIDESLEKMSVSAAIEALKMAEVAVLV 294


>gi|271964501|ref|YP_003338697.1| GTP-binding protein [Streptosporangium roseum DSM 43021]
 gi|270507676|gb|ACZ85954.1| GTP-binding protein [Streptosporangium roseum DSM 43021]
          Length = 472

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           SS ++L+ IL    D      Q + G + R   ++ ++G  N GKSSL N LA ++  +V
Sbjct: 181 SSGDLLDVIL----DKLPETPQQRFG-VERGPRRVALVGKPNVGKSSLLNKLAGEERVLV 235

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
             + GTTRD +   + L G   +  DTAGIR  D
Sbjct: 236 DPMAGTTRDPVDELIQLGGKTWRFVDTAGIRRRD 269



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D+PG TRD +T D    G    + DT G
Sbjct: 36  VAVVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVTYDATWRGRRFTVVDTGG 90


>gi|160880220|ref|YP_001559188.1| small GTP-binding protein [Clostridium phytofermentans ISDg]
 gi|160428886|gb|ABX42449.1| small GTP-binding protein [Clostridium phytofermentans ISDg]
          Length = 416

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 56/86 (65%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           I I G  NAGKSSL NAL  +++AIV+D+ GTT D +  T++L   G +V I DT G  +
Sbjct: 14  IGIFGKRNAGKSSLLNALTGQNIAIVSDVLGTTTDPVLKTMELLPLGPVVFI-DTPGF-D 71

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            D ++ K+ ++++F  +   +L+L++
Sbjct: 72  DDSLLGKDRVEKSFQMLRKTNLVLVI 97


>gi|254499341|ref|ZP_05112012.1| GTP-binding protein EngA [Legionella drancourtii LLAP12]
 gi|254351446|gb|EET10310.1| GTP-binding protein EngA [Legionella drancourtii LLAP12]
          Length = 468

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  KI   G  N GKS+L N +  ++  +V D+PGTTRD + I    +     + DTAG+
Sbjct: 173 DAIKIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSIAIPFVRDEQRYILIDTAGV 232

Query: 278 RET---DDIVEKEGIKRTFLEVENADLILLLKEIN 309
           R     D+ +EK  + +T   ++ +++ L L + N
Sbjct: 233 RRKSRIDEKIEKFSVIKTLQAIKESNVCLQLLDAN 267



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 42/84 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   A+V D PG TRD              + DT GI   D
Sbjct: 5   IALVGRPNVGKSTLFNRLTKTQDALVADFPGLTRDRQYGQAQHNEKSYIVVDTGGIGVDD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             V+    K++ + +  AD++L L
Sbjct: 65  IAVDSLMSKQSTIALNEADIVLFL 88


>gi|220931435|ref|YP_002508343.1| Ferrous iron transport protein FeoB [Halothermothrix orenii H 168]
 gi|219992745|gb|ACL69348.1| Ferrous iron transport protein FeoB [Halothermothrix orenii H 168]
          Length = 173

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I  N  K+ ++G  N GKS +FN L     A+V++ PGTT ++ T  + +EG +V++ DT
Sbjct: 7   ITTNDKKVYLVGSPNVGKSVIFNYLTD-SYALVSNYPGTTVELSTGKILIEGQVVRLIDT 65

Query: 275 AGIRETD-DIVEKEGIKRTFLEVENADLIL 303
            GI      I E+E + R  L   N DL++
Sbjct: 66  PGIYSLYFPISEEEKVTRKVLMTGNPDLVI 95


>gi|327399427|ref|YP_004340296.1| GTP-binding protein engA [Hippea maritima DSM 10411]
 gi|327182056|gb|AEA34237.1| GTP-binding protein engA [Hippea maritima DSM 10411]
          Length = 434

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 29/36 (80%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           K+ I+G  N GKS+LFNAL KK+ +++ D+PGTTRD
Sbjct: 3   KVAIVGKPNVGKSTLFNALVKKNKSLILDMPGTTRD 38



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           KI I G SN GKSSL NA+  ++ ++V+D  GTT D +            + DTAGIR  
Sbjct: 169 KIAITGRSNVGKSSLINAILGENRSVVSDKIGTTTDSIDTPFIYNSNCYLLIDTAGIRKK 228

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +T   ++K     +F  ++ +D+ + L
Sbjct: 229 AKTKKAIDKLSSIFSFFAIDRSDICVFL 256


>gi|323340745|ref|ZP_08080997.1| ribosome-associated GTPase EngA [Lactobacillus ruminis ATCC 25644]
 gi|323091868|gb|EFZ34488.1| ribosome-associated GTPase EngA [Lactobacillus ruminis ATCC 25644]
          Length = 436

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTVFNRIAGERISIVEDTPGVTRDRIYARSEWMGQAFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
           +    +  ++  + ++ AD+I+ +  +
Sbjct: 66  EPFVTQITEQAEIAIDEADVIVFVTSV 92



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKIS 272
           E I +  K   +G  N GKSSL NA+  ++  IV++I GTTRD +      E G +  + 
Sbjct: 169 EEIDDSIKFSFIGRPNVGKSSLVNAILGENRVIVSNIEGTTRDAIDTKFTTEDGSVYTMI 228

Query: 273 DTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           DTAGIR+   +    EK  + R    ++ +D++ ++
Sbjct: 229 DTAGIRKKGKVYENTEKYSVLRAMQAIDRSDVVCVV 264


>gi|114778238|ref|ZP_01453110.1| GTP-binding protein EngA [Mariprofundus ferrooxydans PV-1]
 gi|114551485|gb|EAU54040.1| GTP-binding protein EngA [Mariprofundus ferrooxydans PV-1]
          Length = 456

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-- 279
           I ++G  N GKS+L NA   +D  +V++I GTTRD +   L  +   V++ DTAG R+  
Sbjct: 191 IAVIGRPNVGKSTLINAWLGRDRMVVSEIAGTTRDAIDSMLPFQDGFVRLVDTAGQRKHG 250

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
              D++E     +       AD+ ++L
Sbjct: 251 RISDVIEFVARVKAVQAFRMADVAVML 277



 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDD 282
           I+G  N GKS+LFN L     AIV D PG T D L  +  L    V + DT GI E T D
Sbjct: 19  IVGRPNVGKSTLFNRLIGVRKAIVGDRPGVTVDRLESEFMLGDRHVILVDTGGIGEGTHD 78

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINS 310
           I++     +    +E AD+++   +  S
Sbjct: 79  IMQPAIDIQVDAALEIADIVIFTVDAQS 106


>gi|329939204|ref|ZP_08288578.1| GTP-binding protein EngA [Streptomyces griseoaurantiacus M045]
 gi|329302089|gb|EGG45982.1| GTP-binding protein EngA [Streptomyces griseoaurantiacus M045]
          Length = 513

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +I ++G  N GKSSL N +A ++  +V ++ GTTRD +   ++L G   K  DTAGIR+
Sbjct: 251 RIALIGRPNVGKSSLLNKVAGEERVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRK 309



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G  +  
Sbjct: 76  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 135

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     +    +E AD ++ +
Sbjct: 136 LGIDASVAAQAEYAIEAADAVVFV 159


>gi|319941433|ref|ZP_08015761.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Sutterella wadsworthensis 3_1_45B]
 gi|319805053|gb|EFW01883.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Sutterella wadsworthensis 3_1_45B]
          Length = 360

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 116/273 (42%), Gaps = 53/273 (19%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND--------ISSHISQGKLGE 214
           D L +     EAD   +E+       + ++  DI   K D         +  +S  K+ E
Sbjct: 3   DDLKNFEKAPEADTPQTEDPTTLEMPTDDLEADIEPGKPDDDFERMLAQAGALSSAKVPE 62

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID------LDL 264
             R GY + ++G  N GKS+L NA+  + V+I +  P TTR+    VLT D      +D 
Sbjct: 63  GFRCGY-VAVVGRPNVGKSTLINAIVGEKVSITSKKPQTTRNRVLGVLTTDQAQFIFVDT 121

Query: 265 EGYLVKISDTAGIR----------ETDDIV---EKEGIKRTFLEV------ENADLILLL 305
            G+  K+ +    R          E D +V   E  G K   LEV      E +++IL +
Sbjct: 122 PGFQTKVKNQLTRRMNRSVRSTLSEVDAVVMVIESNGWKPGDLEVLRLLPTEASNVILAV 181

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
               SK ++S  +N     +   +D    Y       +S+     L++L+ +I+ +    
Sbjct: 182 ----SKTDLSKDRN---ALLPLMADSMRRYPFAAIVPVSAEKHRQLDDLLREIEKL---- 230

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
              LP SIP     LY   ++ R+L   ++ EK
Sbjct: 231 ---LPESIPYFDPDLYT-DKSPRFLAAETIREK 259


>gi|315290912|gb|EFU50281.1| conserved hypothetical protein [Escherichia coli MS 153-1]
          Length = 251

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G S AGKSSL NAL + +V  V+D+   TR+V    L   GY + I+D  G+ E+ D 
Sbjct: 2   IMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLSGHGYSMVITDLPGVGESRDR 61

Query: 284 -VEKEGIKRTFLEVENADLILLLKEINSK 311
             E E + R  L     DL+L L + + +
Sbjct: 62  DAEYEALYRDIL--PELDLVLWLIKADDR 88


>gi|148284268|ref|YP_001248358.1| GTP-binding protein Era [Orientia tsutsugamushi str. Boryong]
 gi|146739707|emb|CAM79520.1| GTP-binding protein [Orientia tsutsugamushi str. Boryong]
          Length = 306

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 20/158 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ILG  N+GKS+L N L  + ++IVT    TTR  +T  +      +   DT GI +    
Sbjct: 19  ILGMPNSGKSTLLNRLIGQKISIVTPKVQTTRSAITGIVTYNLTQLIFIDTPGIFQPKKT 78

Query: 284 VEKEGIKRTFLEVENADLILLL----KEINSKKEISFPK----NIDFIFIGTKSDL-YST 334
           +EK  ++  +  +  AD+ LL+    K++N + +I   +     I F  I  K D+  + 
Sbjct: 79  LEKAMVRCAWTSIVGADIALLIIDITKKLNEQIQIILTRLISQKIKFCIILNKIDIGLNN 138

Query: 335 YTEEYDHL-----------ISSFTGEGLEELINKIKSI 361
            T+  + L           IS+  G G++EL+  I +I
Sbjct: 139 LTQLMNDLKQLSINAKIIAISALNGNGVQELLQYISTI 176


>gi|222055346|ref|YP_002537708.1| ferrous iron transport protein B [Geobacter sp. FRC-32]
 gi|221564635|gb|ACM20607.1| ferrous iron transport protein B [Geobacter sp. FRC-32]
          Length = 663

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GKS LFNAL    V  V++ PGT+ +V      + G + +I DT G+   
Sbjct: 23  KVALVGNPNVGKSVLFNALTGAYVT-VSNYPGTSVEVARGSASINGEVCEIIDTPGMYSL 81

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
             I E+E + R  L  E+ D++L
Sbjct: 82  LPITEEERVAREILLKESPDVVL 104


>gi|118579211|ref|YP_900461.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379]
 gi|118501921|gb|ABK98403.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379]
          Length = 665

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++V++G+ N GKS LFNAL    V  V++ PGT+ +V   +  ++G   ++ DT G+   
Sbjct: 20  RVVLVGNPNVGKSVLFNALTGAYVT-VSNYPGTSVEVSRGNATIQGRSWQVIDTPGMYSI 78

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
             I E+E + R  +  E  D++L
Sbjct: 79  HTITEEERVAREIILHETPDVVL 101


>gi|317490529|ref|ZP_07949007.1| GTP-binding protein Era [Eggerthella sp. 1_3_56FAA]
 gi|316910380|gb|EFV32011.1| GTP-binding protein Era [Eggerthella sp. 1_3_56FAA]
          Length = 307

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 85/174 (48%), Gaps = 26/174 (14%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +G+  ++G+ + ++G  NAGKS+L NA+  K +AI ++   TTR      L  EG+ + +
Sbjct: 8   VGDSFKSGF-VTLVGRPNAGKSTLINAIMGKKIAITSNTAQTTRHRFRAALTREGFQLIL 66

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILL------------------LKEINSKKE 313
            DT G+ +  D + +E        +E+ D++                    LK   SKK 
Sbjct: 67  VDTPGLHKPHDALGEELNTSALKALEDVDVVAFLVDASKPVGTGDEWVAAQLKRARSKKI 126

Query: 314 ISFPKNIDFIFIGTKSD---LYSTYTEEYDHLI--SSFTGEGLEELINKIKSIL 362
           +   K ID +  G + D     +    ++D ++  SS TGE +++ ++++ ++L
Sbjct: 127 LVLSK-IDLV-DGEQLDRQRFAAAQLGDWDAVVELSSQTGEHVQDFVDEVVALL 178


>gi|225156498|ref|ZP_03724833.1| small GTP-binding protein [Opitutaceae bacterium TAV2]
 gi|224802927|gb|EEG21174.1| small GTP-binding protein [Opitutaceae bacterium TAV2]
          Length = 526

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS LFN LA++ ++IV D PG TRDV++  +    Y +  +   G++  E
Sbjct: 5   VAIVGRPNVGKSRLFNRLARRRISIVHDQPGVTRDVISTQIASGAYTLLDTGGLGLKGGE 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           T   +     ++    ++ +DLIL +
Sbjct: 65  TTAELTAASERQVDFAIDTSDLILFV 90



 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK-----ISDTAG 276
           +  +G  N GKSSL N L + D  IV+++PGTTRD + +     G   K     + D  G
Sbjct: 202 VCFIGRPNVGKSSLGNRLLQSDRLIVSNVPGTTRDAVELPFTFRGREHKEHPFLLIDIGG 261

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305
           I+    +   VE     R+   ++ AD++ L+
Sbjct: 262 IKAATKLASPVEYFSRLRSLDAIQRADVVFLV 293


>gi|126460749|ref|YP_001057027.1| small GTP-binding protein [Pyrobaculum calidifontis JCM 11548]
 gi|126250470|gb|ABO09561.1| small GTP-binding protein [Pyrobaculum calidifontis JCM 11548]
          Length = 385

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 43/200 (21%)

Query: 199 LKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           ++ + + HI + K     R+G  ++VI G+++AGK++LFN L  +D  +V   P  T + 
Sbjct: 169 VRKNRAMHIQRRK-----RSGVPEVVITGYTSAGKTTLFNRLTNED-KLVDGRPFATLET 222

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVE--KEGIKRTFLEVENADLILL----------- 304
            +  LDL G  V I+DT G    DD+     E    T  EV  AD++LL           
Sbjct: 223 YSRALDLWGKRVVITDTIGF--IDDLPPFLIESFHSTLQEVTEADVVLLVVDGSDPPGEL 280

Query: 305 ----------LKEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDHL--ISSFTGEG 350
                     L E+   ++   P    +D I IG   +L S   + +     IS+ TG G
Sbjct: 281 SRKLETSMETLGEVGVSRDRVIPVVNKVDRIGIGRVRELRSVLAKYFTWFIPISALTGFG 340

Query: 351 LEELINKIKSILSNKFKKLP 370
           +E L    K++L   F K+P
Sbjct: 341 IEAL----KAVL---FFKVP 353


>gi|313801893|gb|EFS43127.1| GTP-binding protein HflX [Propionibacterium acnes HL110PA2]
 gi|314962812|gb|EFT06912.1| GTP-binding protein HflX [Propionibacterium acnes HL082PA1]
          Length = 493

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 32/190 (16%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265
           K  + IRN    + I+G++NAGKSSL N L +  V    A+   +  TTR   T D    
Sbjct: 263 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 318

Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKK---- 312
           G +  ++DT G +R    D+V       E+  +    L V +AD    L ++++ +    
Sbjct: 319 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMAEVLLHVVDADDPDPLGQVDAVRGVLS 378

Query: 313 --------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                   EI     ID +   T   L ST+   Y  L+S+ TGEG+++L+  I++ L  
Sbjct: 379 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 436

Query: 365 KFKKLPFSIP 374
             +++   IP
Sbjct: 437 PSQRVDVVIP 446


>gi|39936158|ref|NP_948434.1| GTP-binding protein EngA [Rhodopseudomonas palustris CGA009]
 gi|192291876|ref|YP_001992481.1| GTP-binding protein EngA [Rhodopseudomonas palustris TIE-1]
 gi|81698158|sp|Q6N586|DER_RHOPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|229784137|sp|B3Q9V3|DER_RHOPT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|39650013|emb|CAE28536.1| GTP-binding protein [Rhodopseudomonas palustris CGA009]
 gi|192285625|gb|ACF02006.1| small GTP-binding protein [Rhodopseudomonas palustris TIE-1]
          Length = 459

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+  N L  ++  + +   GTTRD + ++++ +G   ++ DTAG+R  
Sbjct: 189 RVAIVGRPNAGKSTFINRLLGEERLLTSPEAGTTRDSIAVEVEWKGRDFRVFDTAGLRRR 248

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKE 313
             I   +EK  +      V  A++++L+ +  ++ E
Sbjct: 249 SRIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRFE 284



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  + +A+V D PG TRD    +  L      + DTAG+ E
Sbjct: 3   FTLAIIGRPNVGKSTLFNRLVGQKLALVDDAPGVTRDRREGEGRLGDLNFTLIDTAGLDE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSD 330
                +     ++T   +E AD +L + +       N +    F +  N   + +  KS+
Sbjct: 63  GPKGSLTARMQEQTETAIELADALLFVFDARAGLTPNDRAFADFARRANKPVVLVANKSE 122

Query: 331 LYS---TYTEEY-----DHL-ISSFTGEGLEELINKIKSIL 362
             S      E Y     D + IS+  GEG+ EL + ++ +L
Sbjct: 123 GKSGEIGAMESYALGLGDPVQISAEHGEGMGELYDALRPLL 163


>gi|227496096|ref|ZP_03926402.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces
           urogenitalis DSM 15434]
 gi|226834330|gb|EEH66713.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces
           urogenitalis DSM 15434]
          Length = 720

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 83/179 (46%), Gaps = 31/179 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N++A     +V ++ GTTRD +   ++L+G      DTAGIR  
Sbjct: 460 RVALVGRPNVGKSSLLNSIAGSQRVVVNELAGTTRDPVDEVIELDGRQWLFIDTAGIRRR 519

Query: 281 DDIVEKEG-----IKRTFLEVENADLILLL---KEINSKKEISFPKNI-----DFIFIGT 327
             + +  G     + RT   +E A++ ++L    E  S++++   + +       + +  
Sbjct: 520 --VKQSRGADYYAVLRTQGAIEKAEVAVVLLDASESVSEQDVRVIQQVVDAGRALVLVNN 577

Query: 328 KSDLYS-------TYTEEYD--------HL-ISSFTGEGLEELINKIKSILSNKFKKLP 370
           K DL         T+  E+D        H+ +++ TG     L+  + + L     ++P
Sbjct: 578 KWDLVDEERQKMLTWETEHDLAHVAWAPHINLAARTGWHTNRLVRALDAALEGWTTRIP 636



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  + VA+V D PG TRD ++   +  G    I DT G     
Sbjct: 285 LAVVGRPNVGKSTLVNRVLGRRVAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWELDV 344

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++    +  + VE AD ++L+
Sbjct: 345 KGLDQAVATQAEVAVELADAVILV 368


>gi|320093654|ref|ZP_08025534.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319979402|gb|EFW10884.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 503

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           ++L+ +  +  D S+H      G       ++ ++G  N GKSSL NALA     +V ++
Sbjct: 218 DLLDAVAAVLPDESAHAPAPPSG----GPRRVALVGRPNVGKSSLLNALAGSSRVVVNEL 273

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            GTTRD +   ++L+G      DTAGIR
Sbjct: 274 AGTTRDPVDELIELDGRPWWFVDTAGIR 301



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 76/171 (44%), Gaps = 27/171 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 70  LAVVGRPNVGKSTLVNRVLGRREAVVQDTPGVTRDRVSYPAEWAGRDFTLVDTGGWE--- 126

Query: 282 DIVEKEGIKRTFLE-----VENADLILLLKEINSKKEISFPKNIDFIFIGTK-----SDL 331
             V+ +G+ R+  E     V+ AD ++L+ +       S  + +  +    K     ++ 
Sbjct: 127 --VDVKGLDRSVAEQAETAVDLADAVVLVLDATVGVTASDERIVTMLRAKRKPVVLAANK 184

Query: 332 YSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             +  +E D            H +S+  G G+ +L++ + ++L ++    P
Sbjct: 185 VDSAVQEADAAYLWGLGMGEPHPVSALHGRGVGDLLDAVAAVLPDESAHAP 235


>gi|300939321|ref|ZP_07153993.1| conserved hypothetical protein [Escherichia coli MS 21-1]
 gi|300455788|gb|EFK19281.1| conserved hypothetical protein [Escherichia coli MS 21-1]
          Length = 210

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 37  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 95

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 96  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 141


>gi|258591964|emb|CBE68269.1| GTP-binding protein engA [NC10 bacterium 'Dutch sediment']
          Length = 439

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL NAL  ++  IV++  GTTRD +            + DTAG+R  
Sbjct: 178 RVTVVGRPNVGKSSLVNALLGQERVIVSEQAGTTRDAIDTPFTYNDTAYILIDTAGLRSR 237

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +   +E+  + R    +E +D+ L+L  +++K  I+
Sbjct: 238 SKVQQPLERFSVVRALKAIERSDVALIL--VDAKDGIT 273



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 32/56 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G  N GKS+LFN L     AIV D PG TRD L   ++ +G    + DT G+
Sbjct: 6   VTIVGRPNVGKSTLFNRLVGGRRAIVHDQPGVTRDRLYATVEWKGRAFTLGDTGGL 61


>gi|149204177|ref|ZP_01881145.1| GTP-binding protein EngA [Roseovarius sp. TM1035]
 gi|149142619|gb|EDM30664.1| GTP-binding protein EngA [Roseovarius sp. TM1035]
          Length = 488

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ ++G  NAGKS+L N +  ++  +     G TRD +++ +D +G  V+I DTAG+R  
Sbjct: 203 QVAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLRIDWDGMPVRIFDTAGMRKK 262

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +  D +EK  +      V+ A+++++L
Sbjct: 263 AKVQDKLEKLSVSDGLRAVKFAEVVVVL 290



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V + PG TRD+      L      + DTAG+ +
Sbjct: 3   FSVAIVGRPNVGKSTLFNRLVGKRLALVDNQPGVTRDLREGAARLGDLRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
            TD+ ++    K T   V+ AD+ L +
Sbjct: 63  ATDESLQGRMRKLTERAVDMADICLFV 89


>gi|94495668|ref|ZP_01302248.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58]
 gi|94425056|gb|EAT10077.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58]
          Length = 456

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L G    I DTAG  E +
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRREGEAHLLGLDFTIIDTAGY-EDE 63

Query: 282 DIVEKEGIKRTFLE--VENADLILLL 305
           D     G  R   E  V+N D+ L L
Sbjct: 64  DPQSLPGRMRIQTEAAVDNCDVALFL 89



 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 8/93 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL---EGY--LVKISDTA 275
           K+ I+G  NAGKS+L N L  ++  +     G TRD + +D      EG    V++ DTA
Sbjct: 187 KLAIVGRPNAGKSTLINRLLGENRLLTGPEAGITRDSIAVDWSWTSREGLERPVRLIDTA 246

Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           G+R   +  D +EK  +      V  A++++LL
Sbjct: 247 GMRKRAKVQDKLEKLAVSDGLNAVNFAEVVVLL 279


>gi|118577285|ref|YP_899525.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379]
 gi|118504790|gb|ABL01272.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379]
          Length = 664

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KIV++G+ N GKS+LFN L    V  V++ PGTT +V      ++G    + DT G+   
Sbjct: 22  KIVMVGNPNVGKSALFNRLTGSYVT-VSNYPGTTVEVSQGKCKIDGEEYSVEDTPGMYSL 80

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             I E+E + R  L    +D++L + +  + K +
Sbjct: 81  LPITEEERVSRDILLTGKSDVVLCVVDAKNLKRM 114


>gi|311068799|ref|YP_003973722.1| GTP-binding protein EngA [Bacillus atrophaeus 1942]
 gi|310869316|gb|ADP32791.1| GTP-binding protein EngA [Bacillus atrophaeus 1942]
          Length = 436

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +    +  ++  + ++ AD+I+ +  +N ++ ++
Sbjct: 66  EPFMTQIRQQAEIAMDEADVIIFM--VNGREGVT 97



 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  ++  IV+++ GTTRD +            I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTMFSYNQQDFVIVDTAGMRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    ++ ++++ ++
Sbjct: 240 YETTEKYSVLRALKAIDRSEVVAVV 264


>gi|307128555|ref|YP_003880585.1| GTP-binding protein Era [Candidatus Sulcia muelleri CARI]
 gi|306483017|gb|ADM89887.1| GTP-binding protein Era [Candidatus Sulcia muelleri CARI]
          Length = 270

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 8/95 (8%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA+  K+++IVT    TTR+ +   L+L    +   DT GI     I
Sbjct: 10  IIGYPNVGKSTLINAIIGKNISIVTYKANTTRNNIIGILNLYNSQIIFYDTPGI-----I 64

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
           +    IK+   E   AD+++ + EI    E+ F K
Sbjct: 65  INNNYIKKYITE---ADIVIYITEIGKNNELFFKK 96


>gi|316933671|ref|YP_004108653.1| ribosome-associated GTPase EngA [Rhodopseudomonas palustris DX-1]
 gi|315601385|gb|ADU43920.1| ribosome-associated GTPase EngA [Rhodopseudomonas palustris DX-1]
          Length = 458

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+  N L  ++  + +   GTTRD + +++  +G   ++ DTAG+R  
Sbjct: 188 RVAIVGRPNAGKSTFINRLLGEERLLTSPEAGTTRDSIAVEVQWKGREFRVFDTAGLRRR 247

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKE 313
             I   +EK  +      V  A++++L+ +  ++ E
Sbjct: 248 SRIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRFE 283



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  + +A+V D PG TRD    +  L      + DTAG+ E
Sbjct: 3   FTLAIIGRPNVGKSTLFNRLVGQKLALVDDAPGVTRDRREGEGRLGDLTFTLIDTAGLDE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338
                +     ++T   +E+AD +L + +  +    +     DF     K  +      E
Sbjct: 63  GPKGSLTARMQEQTETAIEHADALLFVIDARAGLTPNDRAFADFARRANKPVVLVANKSE 122

Query: 339 YDH-----------------LISSFTGEGLEELINKIKSIL 362
             H                  IS+  GEGL EL + ++ ++
Sbjct: 123 GKHGEIGAMESYALGLGDPVQISAEHGEGLGELYDALRPLM 163


>gi|302393066|ref|YP_003828886.1| iron-only hydrogenase maturation protein HydF [Acetohalobium
           arabaticum DSM 5501]
 gi|302205143|gb|ADL13821.1| iron-only hydrogenase maturation protein HydF [Acetohalobium
           arabaticum DSM 5501]
          Length = 411

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 9/87 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I ILG  NAGKSSL NAL  +D+A+V+ + GTT D +   +++   G +V I DTA
Sbjct: 8   NRLHIAILGRRNAGKSSLINALTNQDLAVVSKVAGTTTDPVYKRMEILPIGPVVVI-DTA 66

Query: 276 GIRETDDIVE------KEGIKRTFLEV 296
           GI +T ++ +      KE + RT L V
Sbjct: 67  GIDDTGELGDLRVKKTKEVLGRTDLAV 93


>gi|284054187|ref|ZP_06384397.1| small GTP-binding protein [Arthrospira platensis str. Paraca]
          Length = 187

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   + ++G  N GKS LFNAL    V  V++ PGTT D+ T D+ +    + I DT G+
Sbjct: 3   NKPTVALVGSPNVGKSVLFNALTSHYVT-VSNYPGTTVDITTGDMIIGDKAIAIIDTPGM 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL 303
                I E+E + R  L     DL++
Sbjct: 62  YSLLPITEEEKVGRDLLMTRGIDLVI 87


>gi|260890127|ref|ZP_05901390.1| hypothetical protein GCWU000323_01289 [Leptotrichia hofstadii
           F0254]
 gi|260860150|gb|EEX74650.1| GTP-binding protein Era [Leptotrichia hofstadii F0254]
          Length = 293

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 3/100 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ I I+G  N GKS+L N L K+ VAIV+D  GTTRD +   +++        DT 
Sbjct: 1   MKSGF-ITIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGESQFIFVDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           GI +   ++ +         +EN DLI+ +  ++  +EIS
Sbjct: 60  GIHKPKHLLGEHMTNVALEALENVDLIMFM--LDGTQEIS 97


>gi|224373288|ref|YP_002607660.1| GTP-binding protein Era [Nautilia profundicola AmH]
 gi|223589409|gb|ACM93145.1| GTP-binding protein Era [Nautilia profundicola AmH]
          Length = 293

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 19/154 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ILG  NAGKS+L N L  + +A+V+     +R  +   +      + + DT G+ E + +
Sbjct: 9   ILGKPNAGKSTLLNWLLGEKIALVSPKANASRKRVNAIVMHGDDQIILLDTPGLHEKEKL 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYS---- 333
           + K  +K     + ++DL+L L ++    S  E       KNI  I + TK+DL S    
Sbjct: 69  LNKFMLKEALKALSDSDLVLFLADVRDDLSGYEWFLELNTKNIPHIVVLTKTDLVSEEEV 128

Query: 334 -TYTEEYDHL--------ISSFTGEGLEELINKI 358
               EEY  L        IS+  G+G +EL+N I
Sbjct: 129 RKKIEEYKKLGKALDVIPISAVEGKGKDELLNAI 162


>gi|331654127|ref|ZP_08355127.1| conserved hypothetical protein [Escherichia coli M718]
 gi|331047509|gb|EGI19586.1| conserved hypothetical protein [Escherichia coli M718]
          Length = 150

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G S AGKSSL NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ 
Sbjct: 52  IGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESR 111

Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305
           D   E E + R  L     DL+L L
Sbjct: 112 DRDAEYEALYRNIL--SELDLVLWL 134


>gi|239621484|ref|ZP_04664515.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|239515945|gb|EEQ55812.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           longum subsp. infantis CCUG 52486]
          Length = 698

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA+++ A+V D+ GTTRD +   +++D E +L    DTAGI+
Sbjct: 438 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 495

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
                +   E     RT   +E  +L L+L
Sbjct: 496 RRQHKLTGAEYYSSLRTQAAIERCELALIL 525



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 264 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 323

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E     +  + V  AD ++ +
Sbjct: 324 EGIESAIASQAQVAVTLADAVVFV 347


>gi|296454185|ref|YP_003661328.1| small GTP-binding protein [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183616|gb|ADH00498.1| small GTP-binding protein [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 709

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA+++ A+V D+ GTTRD +   +++D E +L    DTAGI+
Sbjct: 449 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 506

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
                +   E     RT   +E  +L L+L
Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALIL 536



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E     +  + V  AD ++ +
Sbjct: 335 EGIESAIASQAQIAVTLADAVVFV 358


>gi|170289148|ref|YP_001739386.1| small GTP-binding protein [Thermotoga sp. RQ2]
 gi|238688853|sp|B1LBK5|ENGB_THESQ RecName: Full=Probable GTP-binding protein EngB
 gi|170176651|gb|ACB09703.1| small GTP-binding protein [Thermotoga sp. RQ2]
          Length = 195

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 26/167 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRE 279
           +  +G SN GKSSL NAL  + VA V+  PG TR +    ++ + Y V +     A + +
Sbjct: 26  VAFVGRSNVGKSSLLNALFNRKVAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSK 85

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSD- 330
            + ++ K  ++  F    +  ++ LL +     +      I + K  NI F  + TK D 
Sbjct: 86  KERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDFMMIEWMKSLNIPFTIVLTKMDK 145

Query: 331 ---------------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                          ++S Y E      SS TGEG+ EL++ I ++L
Sbjct: 146 VKMSERAKKLEEHRKVFSRYGEYTIIPTSSVTGEGISELLDLISTLL 192


>gi|46191228|ref|ZP_00206719.1| COG1160: Predicted GTPases [Bifidobacterium longum DJO10A]
          Length = 597

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA+++ A+V D+ GTTRD +   +++D E +L    DTAGI+
Sbjct: 337 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 394



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G
Sbjct: 163 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGG 217


>gi|257126292|ref|YP_003164406.1| GTP-binding protein Era [Leptotrichia buccalis C-1013-b]
 gi|257050231|gb|ACV39415.1| GTP-binding protein Era [Leptotrichia buccalis C-1013-b]
          Length = 293

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 3/100 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ I I+G  N GKS+L N L K+ VAIV+D  GTTRD +   +++        DT 
Sbjct: 1   MKSGF-ITIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGESQFIFVDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           GI +   ++ +         +EN DLI+ +  ++  +EIS
Sbjct: 60  GIHKPKHLLGEHMTNVALEALENVDLIMFM--LDGTQEIS 97


>gi|54023981|ref|YP_118223.1| GTP-binding protein EngA [Nocardia farcinica IFM 10152]
 gi|54015489|dbj|BAD56859.1| putative GTP-binding protein [Nocardia farcinica IFM 10152]
          Length = 472

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 19/168 (11%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           GE  +    + ++G  N GKS+L N +  +  A+V DIPG TRD ++ +    G    + 
Sbjct: 29  GEAQQAMPTLAVVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYEATWAGRRFLVQ 88

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIF 324
           DT G       +++   ++  L +  AD ILL+ +      +  E +  K     I  I 
Sbjct: 89  DTGGWEPDAKGLQQAVARQAELAMATADAILLVVDATVGATATDEAAVKKLRRSQIPVIL 148

Query: 325 IGTKSD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           +  K D          L+S    E   ++S+  G G  +L++ +  +L
Sbjct: 149 VANKVDDQRLEAEAAALWSLGLGE-PRMVSAAHGRGTGDLLDDVLEVL 195



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA  + ++V D+ GTT D +   ++L G + K  DTAG+R
Sbjct: 210 RVALVGKPNVGKSSLLNKLAGDERSVVHDVAGTTVDPVDSLVELGGKIWKFVDTAGLR 267


>gi|220932765|ref|YP_002509673.1| small GTP-binding protein [Halothermothrix orenii H 168]
 gi|219994075|gb|ACL70678.1| small GTP-binding protein [Halothermothrix orenii H 168]
          Length = 411

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 8/92 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTA 275
           N   I + G  N GKS+L N L  +++A+V+D+PGTT D +   ++L   G +V I DTA
Sbjct: 8   NRPHIAVFGRRNVGKSTLINTLTNQELALVSDVPGTTTDPVYKSMELLPLGPVVMI-DTA 66

Query: 276 GIRETDDI--VEKEGIKRTFLEVENADLILLL 305
           GI   DD+  + K  IK+T   +   DL +L+
Sbjct: 67  GI---DDVGSLGKLRIKKTREVIRRTDLAILV 95


>gi|332798243|ref|YP_004459742.1| small GTP-binding protein [Tepidanaerobacter sp. Re1]
 gi|332695978|gb|AEE90435.1| small GTP-binding protein [Tepidanaerobacter sp. Re1]
          Length = 397

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 4/90 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I + G  N+GKSSL NA+  +++A+V+D PGTT D +   ++L   G +V I DTA
Sbjct: 8   NRLHIGLFGRRNSGKSSLINAITGQEIALVSDFPGTTTDPVYKAMELLPIGPVVFI-DTA 66

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           G+ +  D+ E   IK+T   ++  D+ L++
Sbjct: 67  GLDDVGDLGELR-IKKTLEVMDKTDIALVV 95


>gi|255598157|ref|XP_002536940.1| Ferrous iron transport protein B, putative [Ricinus communis]
 gi|223518039|gb|EEF25443.1| Ferrous iron transport protein B, putative [Ricinus communis]
          Length = 370

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  N GKS+LFN L+    A V + PG T D+++  + L G++ ++ D  G+ + 
Sbjct: 3   RVALLGMPNTGKSTLFNRLSGAS-ARVGNWPGITVDLMSAKILLGGHIAELVDLPGLYDL 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
               + E + R FL     DL+L++  +NS +
Sbjct: 62  HGFSDDEHVVRHFLSHHAIDLVLII--LNSAQ 91


>gi|161485602|ref|NP_695919.2| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           longum NCC2705]
 gi|317483249|ref|ZP_07942244.1| ribosome-associated GTPase EngA [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915318|gb|EFV36745.1| ribosome-associated GTPase EngA [Bifidobacterium sp. 12_1_47BFAA]
          Length = 709

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA+++ A+V D+ GTTRD +   +++D E +L    DTAGI+
Sbjct: 449 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 506

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
                +   E     RT   +E  +L L+L
Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALIL 536



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E     +  + V  AD ++ +
Sbjct: 335 EGIESAIASQAQVAVTLADAVVFV 358


>gi|322689198|ref|YP_004208932.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F]
 gi|320460534|dbj|BAJ71154.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F]
          Length = 709

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA+++ A+V D+ GTTRD +   +++D E +L    DTAGI+
Sbjct: 449 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 506

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
                +   E     RT   +E  +L L+L
Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALIL 536



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E     +  + V  AD ++ +
Sbjct: 335 EGIESAIASQAQVAVTLADAVVFV 358


>gi|227547248|ref|ZP_03977297.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227212207|gb|EEI80103.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 709

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA+++ A+V D+ GTTRD +   +++D E +L    DTAGI+
Sbjct: 449 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 506

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
                +   E     RT   +E  +L L+L
Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALIL 536



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E     +  + V  AD ++ +
Sbjct: 335 EGIESAIASQAQVAVTLADAVVFV 358


>gi|116670099|ref|YP_831032.1| GTP-binding protein EngA [Arthrobacter sp. FB24]
 gi|116610208|gb|ABK02932.1| small GTP-binding protein [Arthrobacter sp. FB24]
          Length = 516

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 27/177 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N LA  +  +V +  GTTRD +   ++L G   +  DTAGIR  
Sbjct: 255 RIALIGRPNVGKSSLLNKLAGSERVVVDNTAGTTRDPVDEFIELGGRTWRFVDTAGIRRR 314

Query: 281 DDIVEKEGIK---RTFLEVENAD---LILLLKEINSKKEI-----SFPKNIDFIFIGTKS 329
             + +        RT   +E A+   ++L + E+ S++++     +       +    K 
Sbjct: 315 QHMAQGADFYASLRTQSALEKAEVAVVLLAVDEVLSEQDVRILQLAIESGRALVLAFNKW 374

Query: 330 DLYS----TYTE---EYD--HL-------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           DL      TY E   E D  H+       IS+ TG   + L+  + + L +  K++P
Sbjct: 375 DLLDDERRTYLEREIEQDLAHVAWAPRVNISALTGWHKDRLVPALDTALESWDKRIP 431



 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD +       G    + DT G     
Sbjct: 81  LAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSATWNGRNFTVVDTGGWEHDA 140

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++  + VE AD +L +
Sbjct: 141 RGIHARVAEQAEMAVELADAVLFV 164


>gi|189439326|ref|YP_001954407.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           longum DJO10A]
 gi|312132698|ref|YP_004000037.1| cmk [Bifidobacterium longum subsp. longum BBMN68]
 gi|189427761|gb|ACD97909.1| Cytidylate kinase [Bifidobacterium longum DJO10A]
 gi|311773657|gb|ADQ03145.1| Cmk [Bifidobacterium longum subsp. longum BBMN68]
          Length = 709

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA+++ A+V D+ GTTRD +   +++D E +L    DTAGI+
Sbjct: 449 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 506

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
                +   E     RT   +E  +L L+L
Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALIL 536



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E     +  + V  AD ++ +
Sbjct: 335 EGIESAIASQAQVAVTLADAVVFV 358


>gi|157825293|ref|YP_001493013.1| GTP-binding protein Era [Rickettsia akari str. Hartford]
 gi|189037662|sp|A8GM80|ERA_RICAH RecName: Full=GTPase Era
 gi|157799251|gb|ABV74505.1| GTP-binding protein Era [Rickettsia akari str. Hartford]
          Length = 293

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 50/84 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E  
Sbjct: 9   VCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +EK  ++  +  + +ADL++L+
Sbjct: 69  GSLEKAMVRCAWSSLHSADLVMLI 92


>gi|322691264|ref|YP_004220834.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456120|dbj|BAJ66742.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 709

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA+++ A+V D+ GTTRD +   +++D E +L    DTAGI+
Sbjct: 449 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 506

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
                +   E     RT   +E  +L L+L
Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALIL 536



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E     +  + V  AD ++ +
Sbjct: 335 EGIESAIASQAQVAVTLADAVVFV 358


>gi|213692049|ref|YP_002322635.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523510|gb|ACJ52257.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320458161|dbj|BAJ68782.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 709

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA+++ A+V D+ GTTRD +   +++D E +L    DTAGI+
Sbjct: 449 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 506

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
                +   E     RT   +E  +L L+L
Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALIL 536



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAIVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +E     +  + V  AD ++ +
Sbjct: 335 EGIESAIASQAQVAVTLADAVVFV 358


>gi|47459181|ref|YP_016043.1| GTP-binding protein Era [Mycoplasma mobile 163K]
 gi|47458510|gb|AAT27832.1| GTP-binding protein era [Mycoplasma mobile 163K]
          Length = 297

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT----IDLDLEGYLVKISDTAGIRE 279
           I+G  NAGKSSL N+L K+ V+I+++ P TTRD +T     + + E ++   +DT GI +
Sbjct: 12  IIGKPNAGKSSLLNSLLKESVSIISNKPQTTRDQITGIYSDEANTEQFV--FTDTPGIHK 69

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNI-DFIFIGTKSDL 331
           +   + K+  + ++  +++ DL+L L  I+ + E      IS  +N+ + I I TK DL
Sbjct: 70  SKTELGKKMNEYSYSSIKDIDLVLFLSPIDYEVEEIDLEIISNLENVKNKIAIVTKIDL 128


>gi|313827765|gb|EFS65479.1| GTP-binding protein HflX [Propionibacterium acnes HL063PA2]
          Length = 493

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 32/190 (16%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265
           K  + IRN    + I+G++NAGKSSL N L +  V    A+   +  TTR   T D    
Sbjct: 263 KRADRIRNQVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 318

Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           G +  ++DT G +R    D+V       E+  +    L V +AD    L ++++ + +  
Sbjct: 319 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 378

Query: 317 ---PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                NI  I +  K D         L ST+   Y  L+S+ TGEG+++L+  I++ L  
Sbjct: 379 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 436

Query: 365 KFKKLPFSIP 374
             +++   IP
Sbjct: 437 PSQRVDVVIP 446


>gi|212704882|ref|ZP_03313010.1| hypothetical protein DESPIG_02949 [Desulfovibrio piger ATCC 29098]
 gi|212671724|gb|EEB32207.1| hypothetical protein DESPIG_02949 [Desulfovibrio piger ATCC 29098]
          Length = 309

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 33/188 (17%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G+  R G+ + ++G  NAGKS+L N L  + V IVT  P TTR+ +   L  +       
Sbjct: 3   GQNYRCGW-VALMGPPNAGKSTLLNGLMGQKVTIVTPKPQTTRNQIVGILTDDDAQAIFM 61

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID----------- 321
           DT G+ +    + K  I+  +  +  AD+I+ +  +++   I  P+ +D           
Sbjct: 62  DTPGLSQVRGRLSKTMIQAVWQSLGQADVIMPV--LDAHLYIRHPEYLDRDLAPVAEALA 119

Query: 322 -----FIFIGTKSDLYSTYTEEYDHL--------------ISSFTGEGLEELINKIKSIL 362
                 + +  K DL++  +     L              +S+   +GL EL   IK  L
Sbjct: 120 SDERPMVVVANKVDLFADKSRMLPLLTRLNEMWPRAEIFPVSALNKDGLPELAKLIKKQL 179

Query: 363 SNKFKKLP 370
                + P
Sbjct: 180 PKGIAQFP 187


>gi|302834102|ref|XP_002948614.1| iron hydrogenase assembly protein [Volvox carteri f. nagariensis]
 gi|300266301|gb|EFJ50489.1| iron hydrogenase assembly protein [Volvox carteri f. nagariensis]
          Length = 1198

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
           I + G  NAGKSSL NALA+++  IV   PGTT DV T+ L+L      K+ DTAG+ E
Sbjct: 689 IGVFGIMNAGKSSLVNALAQQEACIVDSHPGTTADVKTVLLELHDLGPAKLLDTAGLDE 747


>gi|67459566|ref|YP_247190.1| GTP-binding protein Era [Rickettsia felis URRWXCal2]
 gi|75536034|sp|Q4UKB0|ERA_RICFE RecName: Full=GTPase Era
 gi|67005099|gb|AAY62025.1| GTP-binding protein Era [Rickettsia felis URRWXCal2]
          Length = 293

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 49/82 (59%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E    
Sbjct: 11  IIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGT 70

Query: 284 VEKEGIKRTFLEVENADLILLL 305
           +EK  ++  +  + +ADL++L+
Sbjct: 71  LEKAMVRCAWSSLHSADLVMLI 92


>gi|203284418|ref|YP_002222158.1| GTP-binding protein [Borrelia duttonii Ly]
 gi|203287952|ref|YP_002222967.1| GTP-binding protein [Borrelia recurrentis A1]
 gi|201083861|gb|ACH93452.1| GTP-binding protein [Borrelia duttonii Ly]
 gi|201085172|gb|ACH94746.1| GTP-binding protein [Borrelia recurrentis A1]
          Length = 440

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           S GKL +      KI I+G  N+GKS+L N L+  +V+IV+ + GTTRD +         
Sbjct: 169 SVGKLSDDEHIDVKIGIIGKPNSGKSTLVNFLSGDEVSIVSSMAGTTRDFIKAKFQRNSK 228

Query: 268 LVKISDTAGIR---ETDDIVEKEGIKRTF 293
             ++ DTAGIR     ++I+E   + R  
Sbjct: 229 TFELIDTAGIRRRARINEIIEHYSVSRAL 257



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 52/98 (53%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +G  I+N   ++I+G  N GKS+LFN L   + +I  ++ G TRD++     +  Y   +
Sbjct: 4   IGSKIQNYSSVLIVGRPNVGKSTLFNKLLSSNRSITNEVYGVTRDLVREICKINSYKFYL 63

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
            D  G     D + +  + +    +++ DLILL+ ++N
Sbjct: 64  IDAGGFTLLKDELSQVVVNKVIGLLDSVDLILLVLDVN 101


>gi|154508812|ref|ZP_02044454.1| hypothetical protein ACTODO_01321 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798446|gb|EDN80866.1| hypothetical protein ACTODO_01321 [Actinomyces odontolyticus ATCC
           17982]
          Length = 517

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL NALA  +  +V ++ GTTRD +   ++L+G      DTAGIR
Sbjct: 258 RVALVGRPNVGKSSLLNALAGGERVVVNELAGTTRDPVDELIELDGRSWWFVDTAGIR 315



 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 84  LAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYPAEWAGRDFTLVDTGGWE--- 140

Query: 282 DIVEKEGIKRTFLE-----VENADLILLL 305
             ++ +G+ R+  E     V+ AD ++L+
Sbjct: 141 --IDVKGLDRSVAEQAEIAVDLADAVVLV 167


>gi|313884154|ref|ZP_07817920.1| ribosome biogenesis GTPase Der [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620601|gb|EFR32024.1| ribosome biogenesis GTPase Der [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 438

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN L    V+IV D PG TRD +       G   ++ DT GI   D
Sbjct: 7   VALVGRPNVGKSTIFNRLVGDRVSIVEDFPGVTRDRVYATGKWLGNDYRLIDTGGIELDD 66

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             + K+   +  + ++ AD+I++L
Sbjct: 67  QPLMKQIRYQAEIAIDEADVIVML 90



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           K   +G  N GKSSL NA+ K++  IV++I GTTR+ +      E G  + + DTAGIR+
Sbjct: 178 KFSFIGRPNVGKSSLVNAVLKEERVIVSNIEGTTREAVDSKFISETGKEMTVIDTAGIRK 237

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    EK  + R+   ++ +D++ ++
Sbjct: 238 KGKVYENTEKYSVMRSLAAIDRSDVVCIV 266


>gi|289425141|ref|ZP_06426918.1| GTP-binding protein HflX [Propionibacterium acnes SK187]
 gi|289154119|gb|EFD02807.1| GTP-binding protein HflX [Propionibacterium acnes SK187]
          Length = 483

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 32/190 (16%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265
           K  + IRN    + I+G++NAGKSSL N L +  V    A+   +  TTR   T D    
Sbjct: 253 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 308

Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           G +  ++DT G +R    D+V       E+  +    L V +AD    L ++++ + +  
Sbjct: 309 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 368

Query: 317 ---PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                NI  I +  K D         L ST+   Y  L+S+ TGEG+++L+  I++ L  
Sbjct: 369 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 426

Query: 365 KFKKLPFSIP 374
             +++   IP
Sbjct: 427 PSQRVDVVIP 436


>gi|332296332|ref|YP_004438255.1| small GTP-binding protein [Thermodesulfobium narugense DSM 14796]
 gi|332179435|gb|AEE15124.1| small GTP-binding protein [Thermodesulfobium narugense DSM 14796]
          Length = 418

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I +LG +N GKSS  N +  +DV+I++ IPGTT DV+   ++L     V   DTAG
Sbjct: 8   NRLHIALLGRTNVGKSSFLNMITGQDVSIISSIPGTTTDVVEKAMELLPIGPVLFLDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE 307
             +   +     +K+T+     AD+ +LL E
Sbjct: 68  FDDKSTLANLR-LKKTYNVFNRADVAVLLLE 97


>gi|283853093|ref|ZP_06370348.1| small GTP-binding protein [Desulfovibrio sp. FW1012B]
 gi|283571491|gb|EFC19496.1| small GTP-binding protein [Desulfovibrio sp. FW1012B]
          Length = 405

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 12/127 (9%)

Query: 218 NGYKIVI--LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
            G ++VI  +G +NAGKSSL NA+  +DVAIV+D+ GTT D +    +L     V   DT
Sbjct: 11  RGVRLVITLVGRTNAGKSSLLNAMTGQDVAIVSDVAGTTTDPVAKAYELLPLGPVTFYDT 70

Query: 275 AGIRETDDI------VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--FIFIG 326
           AG+ +T ++        K+ + RT + V  A+    L E   +  I+  + +D  F+ + 
Sbjct: 71  AGLDDTGELGALRMAATKKVLWRTDIAVVVAEAGPGLTEAE-RAVIADIRRLDVPFLVVF 129

Query: 327 TKSDLYS 333
            K+DL S
Sbjct: 130 NKTDLAS 136


>gi|206603829|gb|EDZ40309.1| GTP-binding protein (EngA) [Leptospirillum sp. Group II '5-way CG']
          Length = 469

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 10/142 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKS+LFN L  +  AIV D PG TRD       +     ++ DT GI   D
Sbjct: 7   IAILGRPNVGKSTLFNRLLSRREAIVEDRPGVTRDRHYSQGTIGRKSFRLVDTGGILFGD 66

Query: 282 DIVEKEGI-KRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY----- 335
           D    E I K+    +E AD ++ + +    +E   P + D I    +S   S +     
Sbjct: 67  DHPLGESIRKQALFALEEADAVIYVMD---GREGYLPVDADVIGRIRRSGKPSVFAVNKV 123

Query: 336 -TEEYDHLISSFTGEGLEELIN 356
            T + + +++ F   G+  LI 
Sbjct: 124 DTVKTEEVLADFHRHGVAPLIG 145



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           Q  L   I +  ++ ++G  N GKS+L N L  ++  + + IPGTTRD +   +      
Sbjct: 189 QAWLQRRIADPPRVAVIGRPNVGKSTLVNRLLGEERLVTSPIPGTTRDAIDTLVTFRDKT 248

Query: 269 VKISDTAGIRETDDIVEKEGI------KRTFLEVENADLIL 303
               DTAG+R+   + E   +       R  LE E A ++L
Sbjct: 249 YHFVDTAGLRKKGKVAEASELYAQIRTDRAILESEIAVVLL 289


>gi|294790886|ref|ZP_06756044.1| ribosome-associated GTPase EngA [Scardovia inopinata F0304]
 gi|294458783|gb|EFG27136.1| ribosome-associated GTPase EngA [Scardovia inopinata F0304]
          Length = 725

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS+L N +  +  AIV D PG TRD ++ D +  G   K+ DT G    
Sbjct: 291 QIAVVGRPNVGKSTLVNRILGRRAAIVEDTPGVTRDRVSYDANWAGTDFKVIDTGGWESD 350

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            + +E    ++  + +  +D ++L+
Sbjct: 351 VEGIESAIAEQAQIAMNLSDAVILV 375



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA+ + ++V D  GTTRD +   + +        DTAGI+  
Sbjct: 466 RVALIGRPNVGKSSLLNELAQDNRSVVNDQAGTTRDPIDQVVTIGSKDWLFIDTAGIKRR 525

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305
             + ++ G       RT   +E ++L L+L
Sbjct: 526 --LHKQTGADYYSSLRTQAAIERSELALVL 553


>gi|229817644|ref|ZP_04447926.1| hypothetical protein BIFANG_02914 [Bifidobacterium angulatum DSM
           20098]
 gi|229785433|gb|EEP21547.1| hypothetical protein BIFANG_02914 [Bifidobacterium angulatum DSM
           20098]
          Length = 709

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 29/182 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +    VA+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAIVGRPNVGKSSLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWE--- 331

Query: 282 DIVEKEGIKRTF-----LEVENADLILLLKE-----INSKKEI-----SFPKNIDFIFIG 326
             V+ EGI         + V  AD ++L+ +      N+++ I     +  K +  + + 
Sbjct: 332 --VDVEGIDSAIASQAEVAVNLADAVVLVVDGQVGLTNTEERIVKMLRASGKPV-TLAVN 388

Query: 327 TKSDLYSTY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
              D  S Y   E+  L       +S+  G G+ EL++     L    K   +  PSH R
Sbjct: 389 KIDDRESEYLAAEFWKLGLGEPYAVSAMHGRGVGELLDAAIDSLKKAEKTSGYLTPSHLR 448

Query: 379 HL 380
            +
Sbjct: 449 RV 450



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA ++  +V D+ GTTRD +   + +D E +L    DTAGI+
Sbjct: 449 RVALVGRPNVGKSSLLNQLANEERTVVNDLAGTTRDPVDEIVSMDGEDWL--FIDTAGIK 506


>gi|319940747|ref|ZP_08015088.1| small GTP-binding protein [Sutterella wadsworthensis 3_1_45B]
 gi|319805807|gb|EFW02581.1| small GTP-binding protein [Sutterella wadsworthensis 3_1_45B]
          Length = 414

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 12/102 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279
           I + G  NAGKSSL NAL  + ++IV+D+PGTT D +    +L   G +V I DTAGI  
Sbjct: 12  IGLFGRRNAGKSSLANALTHQHISIVSDVPGTTTDPVEKACELAPIGPVVFI-DTAGI-- 68

Query: 280 TDDIVE--KEGIKRTFLEVENADLILLLKEI----NSKKEIS 315
            DD+ E  +  ++R+   +E  DL L++       N  +EI+
Sbjct: 69  -DDVGELGRARVERSKTVLEWVDLALIVASAQGLENDDREIA 109


>gi|313764468|gb|EFS35832.1| GTP-binding protein HflX [Propionibacterium acnes HL013PA1]
 gi|313812955|gb|EFS50669.1| GTP-binding protein HflX [Propionibacterium acnes HL025PA1]
 gi|313816006|gb|EFS53720.1| GTP-binding protein HflX [Propionibacterium acnes HL059PA1]
 gi|314915460|gb|EFS79291.1| GTP-binding protein HflX [Propionibacterium acnes HL005PA4]
 gi|314918256|gb|EFS82087.1| GTP-binding protein HflX [Propionibacterium acnes HL050PA1]
 gi|314920069|gb|EFS83900.1| GTP-binding protein HflX [Propionibacterium acnes HL050PA3]
 gi|314932083|gb|EFS95914.1| GTP-binding protein HflX [Propionibacterium acnes HL067PA1]
 gi|314955744|gb|EFT00144.1| GTP-binding protein HflX [Propionibacterium acnes HL027PA1]
 gi|314958159|gb|EFT02262.1| GTP-binding protein HflX [Propionibacterium acnes HL002PA1]
 gi|314967820|gb|EFT11919.1| GTP-binding protein HflX [Propionibacterium acnes HL037PA1]
 gi|315098523|gb|EFT70499.1| GTP-binding protein HflX [Propionibacterium acnes HL059PA2]
 gi|315101119|gb|EFT73095.1| GTP-binding protein HflX [Propionibacterium acnes HL046PA1]
 gi|315105395|gb|EFT77371.1| GTP-binding protein HflX [Propionibacterium acnes HL030PA1]
 gi|315108340|gb|EFT80316.1| GTP-binding protein HflX [Propionibacterium acnes HL030PA2]
 gi|327450795|gb|EGE97449.1| GTP-binding protein HflX [Propionibacterium acnes HL087PA3]
 gi|327453860|gb|EGF00515.1| GTP-binding protein HflX [Propionibacterium acnes HL083PA2]
 gi|328754214|gb|EGF67830.1| GTP-binding protein HflX [Propionibacterium acnes HL087PA1]
 gi|328754535|gb|EGF68151.1| GTP-binding protein HflX [Propionibacterium acnes HL025PA2]
          Length = 493

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 32/190 (16%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265
           K  + IRN    + I+G++NAGKSSL N L +  V    A+   +  TTR   T D    
Sbjct: 263 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 318

Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           G +  ++DT G +R    D+V       E+  +    L V +AD    L ++++ + +  
Sbjct: 319 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 378

Query: 317 ---PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                NI  I +  K D         L ST+   Y  L+S+ TGEG+++L+  I++ L  
Sbjct: 379 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 436

Query: 365 KFKKLPFSIP 374
             +++   IP
Sbjct: 437 PSQRVDVVIP 446


>gi|283788475|ref|YP_003368340.1| GTP-binding protein [Citrobacter rodentium ICC168]
 gi|282951929|emb|CBG91650.1| putative GTP-binding protein [Citrobacter rodentium ICC168]
          Length = 303

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 30  LPYSLSRHILE-HLRKLTHHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 88

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 89  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134


>gi|327330244|gb|EGE71993.1| GTP-binding protein HflX [Propionibacterium acnes HL097PA1]
          Length = 493

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 32/190 (16%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265
           K  + IRN    + I+G++NAGKSSL N L +  V    A+   +  TTR   T D    
Sbjct: 263 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 318

Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           G +  ++DT G +R    D+V       E+  +    L V +AD    L ++++ + +  
Sbjct: 319 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 378

Query: 317 ---PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                NI  I +  K D         L ST+   Y  L+S+ TGEG+++L+  I++ L  
Sbjct: 379 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 436

Query: 365 KFKKLPFSIP 374
             +++   IP
Sbjct: 437 PSQRVDVVIP 446


>gi|291484708|dbj|BAI85783.1| GTP-binding protein EngA [Bacillus subtilis subsp. natto BEST195]
          Length = 436

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +    +  ++  + ++ AD+I+ +  +N ++ ++
Sbjct: 66  EPFLAQIRQQAEIAMDEADVIIFM--VNGREGVT 97



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  ++  IV+++ GTTRD +            I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    ++ ++++ ++
Sbjct: 240 YETTEKYSVLRALKAIDRSEVVAVV 264


>gi|312879371|ref|ZP_07739171.1| small GTP-binding protein [Aminomonas paucivorans DSM 12260]
 gi|310782662|gb|EFQ23060.1| small GTP-binding protein [Aminomonas paucivorans DSM 12260]
          Length = 414

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 17/149 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279
           +V+ G  NAGKSSL N +   + +IV+  PGTT D +   +++ G L  V ++DTAG  +
Sbjct: 12  VVVYGRRNAGKSSLVNRMLGMEASIVSPRPGTTTDPVVRSVEM-GALGPVAVTDTAGYDD 70

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFPKNI-----DFIFIGTKSD- 330
            +D +     +R+   +E AD++L +    E  +  EI+  + +       + + T+SD 
Sbjct: 71  DEDELGTLRTERSRKRLETADIVLFVTPGDEEPTSDEIALTEELHRRDKPVLVVLTRSDR 130

Query: 331 ----LYSTYTEEYDHL-ISSFTGEGLEEL 354
                   +   +  + + + TG G+E+L
Sbjct: 131 EIAEAKRRFAPGFRKIAVDNLTGRGIEDL 159


>gi|16079341|ref|NP_390165.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310200|ref|ZP_03592047.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221314523|ref|ZP_03596328.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221319445|ref|ZP_03600739.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323721|ref|ZP_03605015.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|321311754|ref|YP_004204041.1| GTP-binding protein Der [Bacillus subtilis BSn5]
 gi|1730915|sp|P50743|DER_BACSU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|1146219|gb|AAC83966.1| similar to Escherichia coli GTP-binding protein Era; putative
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634702|emb|CAB14200.1| GTPase essential for ribosome 50S subunit assembly [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|320018028|gb|ADV93014.1| GTP-binding protein Der [Bacillus subtilis BSn5]
          Length = 436

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +    +  ++  + ++ AD+I+ +  +N ++ ++
Sbjct: 66  EPFLAQIRQQAEIAMDEADVIIFM--VNGREGVT 97



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  ++  IV+++ GTTRD +            I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    ++ ++++ ++
Sbjct: 240 YETTEKYSVLRALKAIDRSEVVAVV 264


>gi|160915033|ref|ZP_02077246.1| hypothetical protein EUBDOL_01041 [Eubacterium dolichum DSM 3991]
 gi|158432832|gb|EDP11121.1| hypothetical protein EUBDOL_01041 [Eubacterium dolichum DSM 3991]
          Length = 298

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 23/215 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I I+G  NAGKS+L NA+ K+ VAI T  P TTR+ ++  L  E       DT G
Sbjct: 4   RSGF-IAIVGRPNAGKSTLLNAILKEKVAITTPKPQTTRNNISGILTTEDTQYVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL----KEINSKKEISFPK----NIDFIFIGTK 328
           I +    + +   K  +  +  AD+   +    +   S  E    K    +I    I  K
Sbjct: 63  IHKPKHELGRTLNKNAYTAISEADVNFWVVDATQPYGSGDEFMLEKMKSAHIPVFLILNK 122

Query: 329 SDL---------YSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL          + + E  +      IS+ T + +E L+   +S LS   K  P  + S
Sbjct: 123 IDLLEKEKLLKVLARWQERMEFAEIFPISALTNDNIEHLLEITRSYLSEGPKYFPDDMIS 182

Query: 376 HKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENL 409
                + +++ +R   +   NE+    + ++ EN+
Sbjct: 183 DHGLSFQIAEIIREKVLYKTNEEVPHSVAVVVENM 217


>gi|72161614|ref|YP_289271.1| GTP-binding protein EngA [Thermobifida fusca YX]
 gi|71915346|gb|AAZ55248.1| Small GTP-binding protein domain:GTP-binding [Thermobifida fusca
           YX]
          Length = 463

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA ++  +V  + GTTRD +   ++L G   K  DTAGIR
Sbjct: 198 RVALVGRPNVGKSSLLNKLAGEERVVVDSVAGTTRDAVDELVELGGKTWKFIDTAGIR 255



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 42/84 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D+PG TRD +  D + +G    + DT G     
Sbjct: 24  VAVVGRPNVGKSSLVNRIIGRREAVVEDVPGVTRDRVAYDANWQGREFTLVDTGGWETNA 83

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++     E AD+IL +
Sbjct: 84  KGLAAMVARQAEYAAETADVILFV 107


>gi|295130581|ref|YP_003581244.1| GTP-binding protein HflX [Propionibacterium acnes SK137]
 gi|291375198|gb|ADD99052.1| GTP-binding protein HflX [Propionibacterium acnes SK137]
 gi|313772150|gb|EFS38116.1| GTP-binding protein HflX [Propionibacterium acnes HL074PA1]
 gi|313792154|gb|EFS40255.1| GTP-binding protein HflX [Propionibacterium acnes HL110PA1]
 gi|313810014|gb|EFS47735.1| GTP-binding protein HflX [Propionibacterium acnes HL083PA1]
 gi|313830342|gb|EFS68056.1| GTP-binding protein HflX [Propionibacterium acnes HL007PA1]
 gi|313833716|gb|EFS71430.1| GTP-binding protein HflX [Propionibacterium acnes HL056PA1]
 gi|313838719|gb|EFS76433.1| GTP-binding protein HflX [Propionibacterium acnes HL086PA1]
 gi|314973347|gb|EFT17443.1| GTP-binding protein HflX [Propionibacterium acnes HL053PA1]
 gi|314976024|gb|EFT20119.1| GTP-binding protein HflX [Propionibacterium acnes HL045PA1]
 gi|314983954|gb|EFT28046.1| GTP-binding protein HflX [Propionibacterium acnes HL005PA1]
 gi|315078029|gb|EFT50080.1| GTP-binding protein HflX [Propionibacterium acnes HL053PA2]
 gi|315080654|gb|EFT52630.1| GTP-binding protein HflX [Propionibacterium acnes HL078PA1]
 gi|315096262|gb|EFT68238.1| GTP-binding protein HflX [Propionibacterium acnes HL038PA1]
 gi|327326174|gb|EGE67964.1| GTP-binding protein HflX [Propionibacterium acnes HL096PA2]
 gi|327445938|gb|EGE92592.1| GTP-binding protein HflX [Propionibacterium acnes HL043PA2]
 gi|327448083|gb|EGE94737.1| GTP-binding protein HflX [Propionibacterium acnes HL043PA1]
 gi|327453128|gb|EGE99782.1| GTP-binding protein HflX [Propionibacterium acnes HL092PA1]
 gi|328760604|gb|EGF74171.1| GTP-binding protein HflX [Propionibacterium acnes HL099PA1]
          Length = 493

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 32/190 (16%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265
           K  + IRN    + I+G++NAGKSSL N L +  V    A+   +  TTR   T D    
Sbjct: 263 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 318

Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKK---- 312
           G +  ++DT G +R    D+V       E+  +    L V +AD    L ++++ +    
Sbjct: 319 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 378

Query: 313 --------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                   EI     ID +   T   L ST+   Y  L+S+ TGEG+++L+  I++ L  
Sbjct: 379 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 436

Query: 365 KFKKLPFSIP 374
             +++   IP
Sbjct: 437 PSQRVDVVIP 446


>gi|289425429|ref|ZP_06427206.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK187]
 gi|289154407|gb|EFD03095.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK187]
 gi|313764267|gb|EFS35631.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL013PA1]
 gi|313791953|gb|EFS40054.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA1]
 gi|313801564|gb|EFS42804.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA2]
 gi|313812757|gb|EFS50471.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL025PA1]
 gi|313816358|gb|EFS54072.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL059PA1]
 gi|313827352|gb|EFS65066.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL063PA2]
 gi|313838918|gb|EFS76632.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL086PA1]
 gi|314915744|gb|EFS79575.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA4]
 gi|314917888|gb|EFS81719.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL050PA1]
 gi|314920270|gb|EFS84101.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL050PA3]
 gi|314931490|gb|EFS95321.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL067PA1]
 gi|314955499|gb|EFS99902.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL027PA1]
 gi|314957875|gb|EFT01978.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL002PA1]
 gi|314962609|gb|EFT06709.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL082PA1]
 gi|315077825|gb|EFT49876.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL053PA2]
 gi|315098722|gb|EFT70698.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL059PA2]
 gi|315101509|gb|EFT73485.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL046PA1]
 gi|315108797|gb|EFT80773.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL030PA2]
 gi|327450594|gb|EGE97248.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL087PA3]
 gi|327453328|gb|EGE99982.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL092PA1]
 gi|327454067|gb|EGF00722.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL083PA2]
 gi|328753149|gb|EGF66765.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL025PA2]
 gi|328754012|gb|EGF67628.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL087PA1]
          Length = 456

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 24  VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
             +     ++  L +  AD +L + + N
Sbjct: 84  SGMAAMIAEQAELAISTADAVLFVVDAN 111



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 9/100 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N +A+++  +V+DI GTT D +   + + G + +  DTAG+R+ 
Sbjct: 196 RVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKR 255

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315
             + E  G +     RT   +E A++ +++  I++ + IS
Sbjct: 256 --VKEASGHEYYASLRTQAAIERAEVCVVV--IDASESIS 291


>gi|159903563|ref|YP_001550907.1| GTPase SAR1 and related small G protein [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888739|gb|ABX08953.1| GTPase SAR1 and related small G protein [Prochlorococcus marinus
           str. MIT 9211]
          Length = 516

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 9/97 (9%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKI 271
           E++R    +V+ G  ++GK++L  AL K+ V  V+   GTT+   T  L L+G    ++I
Sbjct: 117 ELVRGDITVVLFGTGSSGKTTLIRALLKEIVGEVSATMGTTKTSHTYRLRLKGLERGIQI 176

Query: 272 SDTAGIRETDDIVEKEGIKR---TFLEVENADLILLL 305
            DT GI ET +    EG KR   +FL+   ADLI+++
Sbjct: 177 IDTPGILETGE----EGNKREKESFLKASRADLIIVV 209


>gi|238650708|ref|YP_002916561.1| GTP-binding protein Era [Rickettsia peacockii str. Rustic]
 gi|238624806|gb|ACR47512.1| GTP-binding protein Era [Rickettsia peacockii str. Rustic]
          Length = 339

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 20/159 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E  
Sbjct: 55  VCIIGRPNNGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114

Query: 282 DIVEKEGIKRTFLEVENADLILL-LKEINSKKEISF-------PKNIDFIFIGTKSDLYS 333
             +EK  ++  +  + +ADL+LL +  + S  +I+          NI  IF+  K D+ S
Sbjct: 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLRSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174

Query: 334 TY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360
            Y        TE + D L   IS+ +G+ ++ L+  I S
Sbjct: 175 KYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 213


>gi|189425185|ref|YP_001952362.1| GTP-binding protein EngA [Geobacter lovleyi SZ]
 gi|238692111|sp|B3E421|DER_GEOLS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189421444|gb|ACD95842.1| small GTP-binding protein [Geobacter lovleyi SZ]
          Length = 449

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN +  +  AIV D+PG TRD     ++       + DT G    T
Sbjct: 5   VAIVGRPNVGKSTLFNRIVGERRAIVDDMPGVTRDRNYAVVERYDKPFILVDTGGFEPVT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEI-SFPKNID--FIFIGTKSDLY 332
           +D + ++  +++ L +E AD+IL L +       +  E+ S  + +D    ++  K D  
Sbjct: 65  EDRMLQQMREQSLLAMEEADVILFLMDAKQGLTPADNEVASMLRRVDKPVFYVVNKVDGE 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNK 365
               E  +         H IS+    G+ +L+++I ++L ++
Sbjct: 125 KVENEAAEFYALGIDNMHTISAAHNRGIRDLLDEIMALLPDE 166



 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           I ++G  N GKSSL N L   +  +   + GTTRD +            + DTAGIR   
Sbjct: 177 IAVVGRPNVGKSSLVNRLLGFERVVANPVAGTTRDSVDTFFTCNKKRYCLIDTAGIRRKG 236

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           +T   +EK  +      +E AD+ L++
Sbjct: 237 KTSQKLEKYSVVDALKSIERADVALIV 263


>gi|289427265|ref|ZP_06428981.1| GTP-binding protein HflX [Propionibacterium acnes J165]
 gi|289159734|gb|EFD07922.1| GTP-binding protein HflX [Propionibacterium acnes J165]
 gi|332675421|gb|AEE72237.1| GTP-binding protein HflX [Propionibacterium acnes 266]
          Length = 483

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 32/190 (16%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265
           K  + IRN    + I+G++NAGKSSL N L +  V    A+   +  TTR   T D    
Sbjct: 253 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 308

Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           G +  ++DT G +R    D+V       E+  +    L V +AD    L ++++ + +  
Sbjct: 309 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 368

Query: 317 ---PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                NI  I +  K D         L ST+   Y  L+S+ TGEG+++L+  I++ L  
Sbjct: 369 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 426

Query: 365 KFKKLPFSIP 374
             +++   IP
Sbjct: 427 PSQRVDVVIP 436


>gi|50842690|ref|YP_055917.1| GTP-binding protein EngA [Propionibacterium acnes KPA171202]
 gi|289428509|ref|ZP_06430193.1| ribosome-associated GTPase EngA [Propionibacterium acnes J165]
 gi|295130771|ref|YP_003581434.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK137]
 gi|50840292|gb|AAT82959.1| putative GTP binding protein [Propionibacterium acnes KPA171202]
 gi|289158203|gb|EFD06422.1| ribosome-associated GTPase EngA [Propionibacterium acnes J165]
 gi|291376501|gb|ADE00356.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK137]
 gi|313772016|gb|EFS37982.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL074PA1]
 gi|313807708|gb|EFS46195.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL087PA2]
 gi|313810216|gb|EFS47937.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL083PA1]
 gi|313818745|gb|EFS56459.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL046PA2]
 gi|313820515|gb|EFS58229.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL036PA1]
 gi|313822679|gb|EFS60393.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL036PA2]
 gi|313825388|gb|EFS63102.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL063PA1]
 gi|313830547|gb|EFS68261.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL007PA1]
 gi|313833583|gb|EFS71297.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL056PA1]
 gi|314924995|gb|EFS88826.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL036PA3]
 gi|314960338|gb|EFT04440.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL002PA2]
 gi|314973547|gb|EFT17643.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL053PA1]
 gi|314975769|gb|EFT19864.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL045PA1]
 gi|314978673|gb|EFT22767.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL072PA2]
 gi|314983751|gb|EFT27843.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA1]
 gi|314987933|gb|EFT32024.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA2]
 gi|314989743|gb|EFT33834.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA3]
 gi|315080449|gb|EFT52425.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL078PA1]
 gi|315084779|gb|EFT56755.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL027PA2]
 gi|315085464|gb|EFT57440.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL002PA3]
 gi|315088479|gb|EFT60455.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL072PA1]
 gi|315095821|gb|EFT67797.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL038PA1]
 gi|315105878|gb|EFT77854.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL030PA1]
 gi|327326374|gb|EGE68164.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL096PA2]
 gi|327330445|gb|EGE72194.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL097PA1]
 gi|327331752|gb|EGE73489.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL096PA3]
 gi|327443529|gb|EGE90183.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL013PA2]
 gi|327445732|gb|EGE92386.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL043PA2]
 gi|327448285|gb|EGE94939.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL043PA1]
 gi|328754740|gb|EGF68356.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL020PA1]
 gi|328760937|gb|EGF74502.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL099PA1]
 gi|332675613|gb|AEE72429.1| GTP-binding protein EngA [Propionibacterium acnes 266]
          Length = 456

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 24  VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
             +     ++  L +  AD +L + + N
Sbjct: 84  SGMAAMIAEQAELAISTADAVLFVVDAN 111



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 9/100 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N +A+++  +V+DI GTT D +   + + G + +  DTAG+R+ 
Sbjct: 196 RVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKR 255

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315
             + E  G +     RT   +E A++ +++  I++ + IS
Sbjct: 256 --VKEASGHEYYASLRTQAAIERAEVCVVV--IDASESIS 291


>gi|314967527|gb|EFT11626.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL037PA1]
          Length = 456

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 24  VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
             +     ++  L +  AD +L + + N
Sbjct: 84  SGMAAMIAEQAELAISTADAVLFVVDAN 111



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 9/100 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N +A+++  +V+DI GTT D +   + + G + +  DTAG+R+ 
Sbjct: 196 RVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKR 255

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315
             + E  G +     RT   +E A++ +++  I++ + IS
Sbjct: 256 --VKEASGHEYYASLRTQAAIERAEVCVVV--IDASESIS 291


>gi|331654128|ref|ZP_08355128.1| putative histone [Escherichia coli M718]
 gi|331047510|gb|EGI19587.1| putative histone [Escherichia coli M718]
          Length = 290

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRNIL--SELDLVLWL 121


>gi|301344405|gb|ADK73963.1| HydF [Shewanella oneidensis]
          Length = 413

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 32/176 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
           Y I ++G  N+GKSSL N LA + ++IV+DI GTT D +    +L+    V   DTAGI 
Sbjct: 22  YHIALVGRRNSGKSSLLNMLAGQQISIVSDIKGTTTDAVAKAYELQPLGPVTFYDTAGID 81

Query: 279 E--TDDIVEKEGIKRTFLEVENADLIL-----------LLKEIN----------SKKEIS 315
           +  T   +     +R     + A L++           L+ EI           +K +I 
Sbjct: 82  DEGTLGAMRVSATRRVLFRSDMALLVVDEQGLCPSDMALIDEIRQLQMPILMVFNKADIC 141

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            PK  D  F   +S  +         ++S+ TG   ++L   +  +   ++K+ P 
Sbjct: 142 TPKAEDIAFCQNQSLPFI--------VVSAATGLAGKQLKQLMVELAPAEYKQEPL 189


>gi|146182630|ref|XP_001471040.1| GTP-binding protein enga [Tetrahymena thermophila]
 gi|146143797|gb|EDK31367.1| GTP-binding protein enga [Tetrahymena thermophila SB210]
          Length = 670

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I I+G SN GKS+L N L +++  I  D+ GTTRD + +     G  + + DT+GI
Sbjct: 362 QISIIGRSNCGKSTLVNNLLQEERVIADDLAGTTRDAIKVQWAYRGRKIDLVDTSGI 418



 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKK--DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           Y I  +G  N GKSSLFN L++   + A+   +PG TRD       + GY +++ DTAG+
Sbjct: 62  YTISFVGRPNVGKSSLFNKLSEDGMNKALTDRMPGLTRDRKEQITTILGYPLRLVDTAGV 121


>gi|331675666|ref|ZP_08376411.1| putative histone [Escherichia coli TA280]
 gi|331067160|gb|EGI38570.1| putative histone [Escherichia coli TA280]
          Length = 154

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G S AGKSSL NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ 
Sbjct: 48  IGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESR 107

Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305
           D   E E + R  L     DL+L L
Sbjct: 108 DRDAEYEALYRDIL--PELDLVLWL 130


>gi|327327397|gb|EGE69173.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL103PA1]
          Length = 456

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 24  VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
             +     ++  L +  AD +L + + N
Sbjct: 84  SGMAAMIAEQAELAISTADAVLFVVDAN 111



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 9/100 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N +A+++  +V+DI GTT D +   + + G + +  DTAG+R+ 
Sbjct: 196 RVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKR 255

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315
             + E  G +     RT   +E A++ +++  I++ + IS
Sbjct: 256 --VKEASGHEYYASLRTQAAIERAEVCVVV--IDASESIS 291


>gi|282853835|ref|ZP_06263172.1| ribosome-associated GTPase EngA [Propionibacterium acnes J139]
 gi|282583288|gb|EFB88668.1| ribosome-associated GTPase EngA [Propionibacterium acnes J139]
 gi|314981499|gb|EFT25593.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA3]
 gi|315092162|gb|EFT64138.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA4]
          Length = 456

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 24  VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
             +     ++  L +  AD +L + + N
Sbjct: 84  SGMAAMIAEQAELAISTADAVLFVVDAN 111



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 9/100 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N +A+++  +V+DI GTT D +   + + G + +  DTAG+R+ 
Sbjct: 196 RVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKR 255

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315
             + E  G +     RT   +E A++ +++  I++ + IS
Sbjct: 256 --VKEASGHEYYASLRTQAAIERAEVCVVV--IDASESIS 291


>gi|148240062|ref|YP_001225449.1| GTP-binding protein Era [Synechococcus sp. WH 7803]
 gi|147848601|emb|CAK24152.1| GTP-binding protein era homolog [Synechococcus sp. WH 7803]
          Length = 312

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 83/195 (42%), Gaps = 24/195 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L    VAI + +  TTR+ L   L  +   + + DT G
Sbjct: 11  RSGF-VALIGRPNVGKSTLVNQLVGDKVAITSPVAQTTRNRLRAILTTDEAQLILVDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNI---- 320
           I +   ++ +  ++     +   D +LLL E            +N  ++   P  +    
Sbjct: 70  IHKPHHLLGERLVQSARSAIGEVDQVLLLLEGCEPPGRGDAFIVNLLRQQRLPVQVVLNK 129

Query: 321 -DFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            D +    + +  + Y +         H   + TGEG  EL+  + +++    +  P  +
Sbjct: 130 WDQVPTAQRPEADAAYRDLLAESGWPIHHCCALTGEGCPELVQAVSALMPEGPQLYPPEM 189

Query: 374 PSHKRHLYHLSQTVR 388
            S +     +++ +R
Sbjct: 190 VSDQPERLLMAELIR 204


>gi|314923527|gb|EFS87358.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL001PA1]
 gi|314966574|gb|EFT10673.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL082PA2]
 gi|315092905|gb|EFT64881.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL060PA1]
 gi|315103573|gb|EFT75549.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL050PA2]
          Length = 456

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 24  VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
             +     ++  L +  AD +L + + N
Sbjct: 84  SGMAAMIAEQAELAISTADAVLFVVDAN 111



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 9/100 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N +A+++  +V+DI GTT D +   + + G + +  DTAG+R+ 
Sbjct: 196 RVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKR 255

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315
             + E  G +     RT   +E A++ +++  I++ + IS
Sbjct: 256 --VKEASGHEYYASLRTQAAIERAEVCVVV--IDASESIS 291


>gi|313837716|gb|EFS75430.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL037PA2]
 gi|314927402|gb|EFS91233.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL044PA1]
 gi|314972655|gb|EFT16752.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL037PA3]
 gi|328907486|gb|EGG27252.1| GTP-binding protein EngA [Propionibacterium sp. P08]
          Length = 456

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 24  VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
             +     ++  L +  AD +L + + N
Sbjct: 84  SGMAAMIAEQAELAISTADAVLFVVDAN 111



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 16/125 (12%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I  L  D +SH S            ++ I+G  N GKSSL N +A+++  +V+DI GTT 
Sbjct: 178 IAVLPKDRTSHESSD-------GPRRVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTV 230

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLLKEINS 310
           D +   + + G + +  DTAG+R+   + E  G +     RT   +E A++ +++  +++
Sbjct: 231 DPVDELVTVGGTVYQFIDTAGLRKR--VKEASGHEYYASLRTQAAIERAEVCVVV--VDA 286

Query: 311 KKEIS 315
            + IS
Sbjct: 287 SESIS 291


>gi|308174076|ref|YP_003920781.1| GTPase [Bacillus amyloliquefaciens DSM 7]
 gi|307606940|emb|CBI43311.1| GTPase essential for ribosome 50S subunit assembly [Bacillus
           amyloliquefaciens DSM 7]
 gi|328552798|gb|AEB23290.1| GTP-binding protein Der [Bacillus amyloliquefaciens TA208]
 gi|328912406|gb|AEB64002.1| GTPase essential for ribosome 50S subunit assembly [Bacillus
           amyloliquefaciens LL3]
          Length = 436

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +    +  ++  + ++ AD+I+ +  +N ++ ++
Sbjct: 66  EPFLTQIRQQAEIAMDEADVIIFM--VNGREGVT 97



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  N GKSSL NA+  ++  IV+++ GTTRD +            I DTAG+R+ 
Sbjct: 177 QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTAFTYNQQEFVIVDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLI 302
             +    EK  + R    ++ +D++
Sbjct: 237 GKVYETTEKYSVLRALKAIDRSDVV 261


>gi|313807506|gb|EFS45993.1| GTP-binding protein HflX [Propionibacterium acnes HL087PA2]
 gi|313818548|gb|EFS56262.1| GTP-binding protein HflX [Propionibacterium acnes HL046PA2]
 gi|313820315|gb|EFS58029.1| GTP-binding protein HflX [Propionibacterium acnes HL036PA1]
 gi|313822878|gb|EFS60592.1| GTP-binding protein HflX [Propionibacterium acnes HL036PA2]
 gi|313825190|gb|EFS62904.1| GTP-binding protein HflX [Propionibacterium acnes HL063PA1]
 gi|314925202|gb|EFS89033.1| GTP-binding protein HflX [Propionibacterium acnes HL036PA3]
 gi|314960015|gb|EFT04117.1| GTP-binding protein HflX [Propionibacterium acnes HL002PA2]
 gi|314978437|gb|EFT22531.1| GTP-binding protein HflX [Propionibacterium acnes HL072PA2]
 gi|314988138|gb|EFT32229.1| GTP-binding protein HflX [Propionibacterium acnes HL005PA2]
 gi|314989942|gb|EFT34033.1| GTP-binding protein HflX [Propionibacterium acnes HL005PA3]
 gi|315084326|gb|EFT56302.1| GTP-binding protein HflX [Propionibacterium acnes HL027PA2]
 gi|315085668|gb|EFT57644.1| GTP-binding protein HflX [Propionibacterium acnes HL002PA3]
 gi|315088910|gb|EFT60886.1| GTP-binding protein HflX [Propionibacterium acnes HL072PA1]
 gi|327331951|gb|EGE73688.1| GTP-binding protein HflX [Propionibacterium acnes HL096PA3]
 gi|327443152|gb|EGE89806.1| GTP-binding protein HflX [Propionibacterium acnes HL013PA2]
 gi|328753483|gb|EGF67099.1| GTP-binding protein HflX [Propionibacterium acnes HL020PA1]
          Length = 493

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 32/190 (16%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265
           K  + IRN    + I+G++NAGKSSL N L +  V    A+   +  TTR   T D    
Sbjct: 263 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 318

Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           G +  ++DT G +R    D+V       E+  +    L V +AD    L ++++ + +  
Sbjct: 319 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 378

Query: 317 ---PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                NI  I +  K D         L ST+   Y  L+S+ TGEG+++L+  I++ L  
Sbjct: 379 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 436

Query: 365 KFKKLPFSIP 374
             +++   IP
Sbjct: 437 PSQRVDVVIP 446


>gi|260856464|ref|YP_003230355.1| hypothetical protein ECO26_3414 [Escherichia coli O26:H11 str.
           11368]
 gi|257755113|dbj|BAI26615.1| hypothetical protein ECO26_3414 [Escherichia coli O26:H11 str.
           11368]
          Length = 358

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 85  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 143

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 144 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 189


>gi|50842504|ref|YP_055731.1| GTP-binding protein [Propionibacterium acnes KPA171202]
 gi|50840106|gb|AAT82773.1| GTP-binding protein [Propionibacterium acnes KPA171202]
          Length = 483

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 32/190 (16%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265
           K  + IRN    + I+G++NAGKSSL N L +  V    A+   +  TTR   T D    
Sbjct: 253 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 308

Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           G +  ++DT G +R    D+V       E+  +    L V +AD    L ++++ + +  
Sbjct: 309 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 368

Query: 317 ---PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                NI  I +  K D         L ST+   Y  L+S+ TGEG+++L+  I++ L  
Sbjct: 369 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 426

Query: 365 KFKKLPFSIP 374
             +++   IP
Sbjct: 427 PSQRVDVVIP 436


>gi|315923956|ref|ZP_07920184.1| GTP-binding protein [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622796|gb|EFV02749.1| GTP-binding protein [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 410

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 86/171 (50%), Gaps = 16/171 (9%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL- 258
           +  I + +++  LGE +  G+     G  NAGKSSL NA+  + +A+V++  GTT D + 
Sbjct: 7   EGSIVATLNETPLGERVHIGF----FGRRNAGKSSLVNAVTGQAMAVVSETAGTTTDPVE 62

Query: 259 -TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------INSK 311
            T++L   G ++ I DT G  +   + EK  + R    ++  D+ +L+ +       + +
Sbjct: 63  KTMELLPIGPVL-IIDTPGTDDVGALGEKR-VARAREVLDRTDIAVLVVDGAVGLTADDR 120

Query: 312 KEISF--PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           + ++    K + ++ +  K D+ S         +S+ TGEG+E    ++ +
Sbjct: 121 RLLALFEEKQVPYLVVMNKCDVGSARMPADSIAVSARTGEGIEAFKKRLAA 171


>gi|296332978|ref|ZP_06875435.1| GTP-binding protein EngA [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674918|ref|YP_003866590.1| ribosome 50S subunit assembly GTPase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149829|gb|EFG90721.1| GTP-binding protein EngA [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413162|gb|ADM38281.1| GTPase essential for ribosome 50S subunit assembly [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 436

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +    +  ++  + ++ AD+I+ +  +N ++ ++
Sbjct: 66  EPFLAQIRQQAEIAMDEADVIIFM--VNGREGVT 97



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA+  ++  IV+++ GTTRD +            I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTAFTYNQQEFVIVDTAGMRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    ++ ++++ ++
Sbjct: 240 YETTEKYSVLRALKAIDRSEVVAVV 264


>gi|124515035|gb|EAY56546.1| GTP-binding protein (EngA) [Leptospirillum rubarum]
          Length = 466

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 10/141 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKS+LFN L  +  AIV D PG TRD       +     ++ DT GI   D
Sbjct: 8   IAILGRPNVGKSTLFNRLLSRREAIVEDRPGVTRDRHYSQGTIGRKSFRLVDTGGILFGD 67

Query: 282 DIVEKEGI-KRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY----- 335
           D    E I K+    +E AD ++ + +    +E   P + D I    +S   S +     
Sbjct: 68  DHPLGESIRKQALFALEEADAVIYVMD---GREGYLPVDADVIGRIRRSGKPSVFAVNKV 124

Query: 336 -TEEYDHLISSFTGEGLEELI 355
            T + + +++ F   G+  LI
Sbjct: 125 DTVKTEEVLADFHRHGVAPLI 145



 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKS+L N L  ++  + + IPGTTRD +   +          DTAG+R+ 
Sbjct: 202 RVAVIGRPNVGKSTLVNRLLGEERLVTSPIPGTTRDAIDTLVTFRDKTYHFVDTAGLRKK 261

Query: 281 DDIVEKEGI------KRTFLEVENADLIL 303
             + E   +       R  LE E A ++L
Sbjct: 262 GKVAEASELYAQIRTDRAILESEIAVVLL 290


>gi|282864448|ref|ZP_06273504.1| small GTP-binding protein [Streptomyces sp. ACTE]
 gi|282560935|gb|EFB66481.1| small GTP-binding protein [Streptomyces sp. ACTE]
          Length = 489

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           +I ++G  N GKSSL N +A +D  +V  + GTTRD +   + L G   K  DTAGIR
Sbjct: 228 RIALIGRPNVGKSSLLNKVAGEDRVVVNALAGTTRDPVDELIQLGGITWKFIDTAGIR 285



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 209 QGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +G LGE       ++ ++G  N GKS+L N +  +  A+V D PG TRD ++ + +  G 
Sbjct: 40  EGALGEAGHGPLPVLAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGR 99

Query: 268 LVKISDTAG 276
             K+ DT G
Sbjct: 100 RFKVVDTGG 108


>gi|154686532|ref|YP_001421693.1| GTP-binding protein EngA [Bacillus amyloliquefaciens FZB42]
 gi|166224304|sp|A7Z636|DER_BACA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|154352383|gb|ABS74462.1| EngA [Bacillus amyloliquefaciens FZB42]
          Length = 436

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +    +  ++  + ++ AD+I+ +  +N ++ ++
Sbjct: 66  EPFLTQIRQQAEIAMDEADVIIFM--VNGREGVT 97



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  N GKSSL NA+  ++  IV+++ GTTRD +            I DTAG+R+ 
Sbjct: 177 QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTAFTYNQQEFVIVDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLI 302
             +    EK  + R    ++ +D++
Sbjct: 237 GKVYETTEKYSVLRALKAIDRSDVV 261


>gi|309703375|emb|CBJ02713.1| putative GTP-binding protein [Escherichia coli ETEC H10407]
          Length = 348

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 75  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 133

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 134 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 179


>gi|149923267|ref|ZP_01911677.1| GTP-binding protein [Plesiocystis pacifica SIR-1]
 gi|149815864|gb|EDM75384.1| GTP-binding protein [Plesiocystis pacifica SIR-1]
          Length = 360

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 45/215 (20%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  R+G+ + + G  N GKS+L NAL  +++A+ T +P TTR+ +        +   + D
Sbjct: 26  QAFRSGF-VALCGRPNVGKSTLLNALLGEELAVATALPQTTRERMLGIWTSPRFQAVLVD 84

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----------------------NSK 311
           T GI +    + K  ++       + D+IL+L E+                       + 
Sbjct: 85  TPGIHKPKSALNKYMVEEAVRGARDVDVILMLAEVPRVPRGKDGHALIQEWEPGPGAKAA 144

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------------------ISSFTGEGLEE 353
            E+  P     + + TK DL      E D L                  +S+  G GLE 
Sbjct: 145 VELLAPLGKPMVLVLTKCDLLG----ERDWLLPIIQRWQAIHAFAGVVPVSAVQGRGLEA 200

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           L  +++  L            S +   +H S+ +R
Sbjct: 201 LREEVEGALPEGPAYYADDQLSDRSMRWHASELIR 235


>gi|323702013|ref|ZP_08113682.1| small GTP-binding protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533099|gb|EGB22969.1| small GTP-binding protein [Desulfotomaculum nigrificans DSM 574]
          Length = 409

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I I G  NAGKSSL N+L  +D+A+V++I GTT D +   ++ L    V I DTAG
Sbjct: 11  NRLHIAIFGRRNAGKSSLINSLTNQDIAVVSNIAGTTTDPVYKSMEILPIGPVVIIDTAG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +   + E   ++++   ++ ADL+LL+
Sbjct: 71  IDDVGLLGELR-VEKSKEVLKKADLVLLV 98


>gi|148265177|ref|YP_001231883.1| GTP-binding protein EngA [Geobacter uraniireducens Rf4]
 gi|189037149|sp|A5G692|DER_GEOUR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|146398677|gb|ABQ27310.1| small GTP-binding protein [Geobacter uraniireducens Rf4]
          Length = 441

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 6/116 (5%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +ND++   +++   + +G   +      KI ++G  N GKS+L N L   +  +    PG
Sbjct: 152 VNDLM---DEVIKALPKGSAADTDEEVTKIAVIGRPNVGKSTLVNRLLGIERVVANPTPG 208

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           TTRD +            + DTAGIR   +T + +EK  +  +   +E AD++L++
Sbjct: 209 TTRDSIDTYFTCNRKRYLLIDTAGIRRKGKTTEKIEKYSVVDSLRSIERADVVLIV 264



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN +  +  A+V D+PG TRD    ++D       + DT G   ET
Sbjct: 5   IAIVGRPNVGKSTLFNRIVGRRKAMVDDMPGVTRDRNYANVDRFDVPFILIDTGGFEPET 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +D + ++  +++ L +  AD+IL +
Sbjct: 65  NDRLLQQMREQSQLAMAEADVILFV 89


>gi|319790169|ref|YP_004151802.1| GTP-binding protein Era [Thermovibrio ammonificans HB-1]
 gi|317114671|gb|ADU97161.1| GTP-binding protein Era [Thermovibrio ammonificans HB-1]
          Length = 305

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + ILG  N GKS+L N+L    VAIVTD P TTR  +     L+   +   DT G
Sbjct: 8   RSGY-VAILGRPNVGKSTLLNSLLGTKVAIVTDKPQTTRHRIVGVKHLKDAQIVFLDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +    + +   +  F  V +AD+IL L
Sbjct: 67  IHKEKFELNRYMNEIAFSVVPDADIILFL 95


>gi|283783291|ref|YP_003374045.1| ribosome-associated GTPase EngA [Gardnerella vaginalis 409-05]
 gi|283441128|gb|ADB13594.1| ribosome-associated GTPase EngA [Gardnerella vaginalis 409-05]
          Length = 734

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +    VA+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 300 IAIIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFKLVDTGGWEADV 359

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + ++    ++  + V  +D ++ L
Sbjct: 360 EGIDSSIAQQAQIAVRLSDAVIFL 383



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA ++ ++V D+ GTTRD +   + +D E +L    DTAGI+
Sbjct: 474 RVALVGRPNVGKSSLLNHLAHEERSVVNDLAGTTRDPVDEVVRVDGEDWL--FIDTAGIK 531

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
                +   E     RT   +E ++L L+L
Sbjct: 532 RRQHKLTGAEYYSSLRTQAAIERSELALIL 561


>gi|260435524|ref|ZP_05789494.1| GTP-binding protein Era [Synechococcus sp. WH 8109]
 gi|260413398|gb|EEX06694.1| GTP-binding protein Era [Synechococcus sp. WH 8109]
          Length = 311

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L E  R+G+ I ++G  N GKS+L N L  + VAI + +  TTR+ L   L +E   + +
Sbjct: 6   LPEDYRSGF-IALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAVLTMEVAQMVL 64

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            DT GI +   ++ +  +K     +   DL++LL E
Sbjct: 65  VDTPGIHKPHHLLGERLVKSARSAIGEVDLVVLLLE 100


>gi|237668706|ref|ZP_04528690.1| ferrous iron transport protein B [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|237657054|gb|EEP54610.1| ferrous iron transport protein B [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 589

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 9/84 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279
           + +LG+ N GK++L+N L   +   V + PG T D        EGY   VK++D  GI  
Sbjct: 4   VALLGNPNVGKTTLYNELTGSN-QYVGNWPGVTVD------KKEGYFEDVKVADLPGIYA 56

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
            D    +E + + +LE EN D+IL
Sbjct: 57  MDTFSNEEKVSKKYLEEENVDVIL 80


>gi|298252771|ref|ZP_06976565.1| GTPase [Gardnerella vaginalis 5-1]
 gi|297533135|gb|EFH72019.1| GTPase [Gardnerella vaginalis 5-1]
          Length = 734

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I I+G  N GKS+L N +    VA+V D PG TRD ++ D +  G   K+ DT G
Sbjct: 300 IAIIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFKLVDTGG 354



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA ++ ++V D+ GTTRD +   + +D E +L    DTAGI+
Sbjct: 474 RVALVGRPNVGKSSLLNHLAHEERSVVNDLAGTTRDPVDEVVRVDGEDWL--FIDTAGIK 531

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
                +   E     RT   +E ++L L+L
Sbjct: 532 RRQHKLTGAEYYSSLRTQAAIERSELALIL 561


>gi|297243478|ref|ZP_06927410.1| GTPase [Gardnerella vaginalis AMD]
 gi|296888523|gb|EFH27263.1| GTPase [Gardnerella vaginalis AMD]
          Length = 734

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I I+G  N GKS+L N +    VA+V D PG TRD ++ D +  G   K+ DT G
Sbjct: 300 IAIIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFKLVDTGG 354



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA ++ ++V D+ GTTRD +   + +D E +L    DTAGI+
Sbjct: 474 RVALVGRPNVGKSSLLNHLAHEERSVVNDLAGTTRDPVDEVVRVDGEDWL--FIDTAGIK 531

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
                +   E     RT   +E ++L L+L
Sbjct: 532 RRQHKLTGAEYYSSLRTQAAIERSELALIL 561


>gi|160903293|ref|YP_001568874.1| small GTP-binding protein [Petrotoga mobilis SJ95]
 gi|160360937|gb|ABX32551.1| small GTP-binding protein [Petrotoga mobilis SJ95]
          Length = 398

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 8/143 (5%)

Query: 218 NGYK--IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           +GY+  I I G  N GKSSL NA+  +++A+V+++ GTT D +   ++L+    V + DT
Sbjct: 5   SGYRTYIAIAGRRNVGKSSLINAIVNQEIALVSNVAGTTTDPVYKSMELQPIGPVTLIDT 64

Query: 275 AGIRETDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEIS--FPK-NIDFIFIGTKS 329
            GI +  ++ +K  E  KR F + +   L++  +    +  I   F K NI FI +  K 
Sbjct: 65  PGIDDEGELGKKRIERAKRAFYKADVGVLVVDSEPNGFEHSICDLFEKMNIPFIIVLNKI 124

Query: 330 DLYSTYTEEYDHLISSFTGEGLE 352
           D  +  +      I+SF    LE
Sbjct: 125 DQLNNVSNLKQLYINSFGRPVLE 147


>gi|325962917|ref|YP_004240823.1| GTP-binding protein Era [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469004|gb|ADX72689.1| GTP-binding protein Era [Arthrobacter phenanthrenivorans Sphe3]
          Length = 516

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N LA  +  +V +  GTTRD +   ++L G   +  DTAGIR  
Sbjct: 255 RIALIGRPNVGKSSLLNKLAGTERVVVDNTAGTTRDPVDEFIELGGRTWRFVDTAGIRRR 314

Query: 281 DDIVEKEGIK---RTFLEVENADLILLLKEIN 309
             + +        RT   +E A++ ++L  ++
Sbjct: 315 QHMAQGADFYASLRTQAALEKAEVAVVLLAVD 346



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 21/160 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD +    +  G    + DT G     
Sbjct: 81  LAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSANWNGRNFTLVDTGGWEHDA 140

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKNI--DFI 323
             +     ++  + VE AD +L + +                  SKK +    N   DF 
Sbjct: 141 RGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEGVMKMLRRSKKPVIMVANKVDDFA 200

Query: 324 FIGTKSDLYS-TYTEEYDHLISSFTGEGLEELINKIKSIL 362
                + L+   + E Y   +S+  G G+ +L++ +  +L
Sbjct: 201 QEADSATLWGLGFGEPYP--VSALHGRGVADLLDHVMDVL 238


>gi|218696652|ref|YP_002404319.1| conserved hypothetical protein with GTPase domain [Escherichia coli
           55989]
 gi|218353384|emb|CAU99418.1| conserved hypothetical protein with GTPase domain [Escherichia coli
           55989]
          Length = 303

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 30  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 88

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 89  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134


>gi|257791391|ref|YP_003181997.1| GTP-binding protein Era [Eggerthella lenta DSM 2243]
 gi|325831362|ref|ZP_08164616.1| ribosome biogenesis GTPase Era [Eggerthella sp. HGA1]
 gi|257475288|gb|ACV55608.1| GTP-binding protein Era [Eggerthella lenta DSM 2243]
 gi|325486616|gb|EGC89064.1| ribosome biogenesis GTPase Era [Eggerthella sp. HGA1]
          Length = 307

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 85/174 (48%), Gaps = 26/174 (14%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +G+  ++G+ + ++G  NAGKS+L NA+  K +AI ++   TTR      L  EG+ + +
Sbjct: 8   VGDSFKSGF-VTLVGRPNAGKSTLINAIMGKKIAITSNTAQTTRHRFRAVLTREGFQLIL 66

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILL------------------LKEINSKKE 313
            DT G+ +  D + +E        +E+ D++                    LK   SKK 
Sbjct: 67  VDTPGLHKPHDALGEELNTSALKALEDVDVVAFLVDASKPVGTGDEWVAAQLKRARSKKI 126

Query: 314 ISFPKNIDFIFIGTKSD---LYSTYTEEYDHLI--SSFTGEGLEELINKIKSIL 362
           +   K ID +  G + D     +    ++D ++  SS TGE +++ ++++ ++L
Sbjct: 127 LVLSK-IDLV-DGEQLDRQRFAAAQLGDWDAVVELSSQTGEHVQDFVDEVVALL 178


>gi|331640795|ref|ZP_08341930.1| conserved hypothetical protein [Escherichia coli H736]
 gi|331037593|gb|EGI09813.1| conserved hypothetical protein [Escherichia coli H736]
          Length = 303

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 30  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 88

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 89  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134


>gi|328957352|ref|YP_004374738.1| GTP-binding protein EngA [Carnobacterium sp. 17-4]
 gi|328673676|gb|AEB29722.1| GTP-binding protein EngA [Carnobacterium sp. 17-4]
          Length = 437

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  +D  IV+ I GTTRD + T  +  +G    + DTAG+R+
Sbjct: 177 KFSLIGRPNVGKSSLVNAILGEDRVIVSSIAGTTRDAIDTAFVGEDGTEFVMIDTAGMRK 236

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305
              +    E+  + R    +E +D++L +
Sbjct: 237 KGKVYENTERYSVLRALRAIERSDVVLCV 265



 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 47/87 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+ G TRD +    +  G    + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVSGVTRDRIYAPAEWLGKEFNVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
           +   ++   +  + ++ AD+I+ +  +
Sbjct: 66  EPFLEQIKYQAEIAMDEADVIIFITSV 92


>gi|229494892|ref|ZP_04388645.1| ribosome-associated GTPase EngA [Rhodococcus erythropolis SK121]
 gi|229318250|gb|EEN84118.1| ribosome-associated GTPase EngA [Rhodococcus erythropolis SK121]
          Length = 475

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD ++ + +  G    + DT G     
Sbjct: 41  LAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWAGRRFLVQDTGGWEPDA 100

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++   ++  L +  AD ILL+
Sbjct: 101 KGLQQAVARQAELAMGTADAILLV 124



 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 13/106 (12%)

Query: 211 KLGEIIRNG------YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           KL E  R G       ++ ++G  N GKSSL N L+  + ++V ++ GTT D +   ++L
Sbjct: 197 KLPETPREGIPGGGPRRVALVGKPNVGKSSLLNKLSGDERSVVHNVAGTTVDPVDSIVEL 256

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLL 305
            G   +  DTAG+R+   +    G +     RT   +E A++ +LL
Sbjct: 257 GGRPWRFVDTAGLRKR--VSHASGAEFYASLRTKSAIEAAEVAILL 300


>gi|145220317|ref|YP_001131026.1| GTP-binding protein Era [Prosthecochloris vibrioformis DSM 265]
 gi|145206481|gb|ABP37524.1| GTP-binding protein Era [Chlorobium phaeovibrioides DSM 265]
          Length = 308

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 28/166 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  NAGKS+L NAL    ++IVT  P TTR  +T     +   +   DT GI E    
Sbjct: 16  IIGPPNAGKSTLLNALLDCKLSIVTHKPQTTRKKITGIYSDDSTQIIFLDTPGIMEPQQK 75

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI--------------DFIFIGTKS 329
           + +  +K T   +++AD I+ L    SKK   F +                  I +  KS
Sbjct: 76  LHEAMLKVTRDTLKDADAIIALLPF-SKKNGPFDRAFAEELHRDWLKNSGKPLIAVFNKS 134

Query: 330 DLYSTYTE---------EYDHL----ISSFTGEGLEELINKIKSIL 362
           DL +   +         E++      IS+  G+GL+EL++ ++  L
Sbjct: 135 DLVNAEQQKEAEAFIRREWNPAAILSISALNGKGLQELVDALRPYL 180


>gi|226306741|ref|YP_002766701.1| GTP-binding protein EngA [Rhodococcus erythropolis PR4]
 gi|226185858|dbj|BAH33962.1| probable GTP-binding protein EngA [Rhodococcus erythropolis PR4]
          Length = 475

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD ++ + +  G    + DT G     
Sbjct: 41  LAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWAGRRFLVQDTGGWEPDA 100

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++   ++  L +  AD ILL+
Sbjct: 101 KGLQQAVARQAELAMGTADAILLV 124



 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 13/106 (12%)

Query: 211 KLGEIIRNG------YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           KL E  R G       ++ ++G  N GKSSL N L+  + ++V ++ GTT D +   ++L
Sbjct: 197 KLPETPREGIPGGGPRRVALVGKPNVGKSSLLNKLSGDERSVVHNVAGTTVDPVDSIVEL 256

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLL 305
            G   +  DTAG+R+   +    G +     RT   +E A++ +LL
Sbjct: 257 GGRPWRFVDTAGLRKR--VSHASGAEFYASLRTKSAIEAAEVAILL 300


>gi|126656519|ref|ZP_01727780.1| iron(II) transporter [Cyanothece sp. CCY0110]
 gi|126622205|gb|EAZ92912.1| iron(II) transporter [Cyanothece sp. CCY0110]
          Length = 208

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           QGK  +I+  G  I ++G  N GKS LFN L       V++ PGTT +V    + + G  
Sbjct: 30  QGKSSQIVSQG-TIALVGSPNVGKSLLFNVLTGA-YTTVSNYPGTTVEVSRNYITIAGKT 87

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK 328
           + + DT G+     + E+E   R  L  E+ DL +    +   K +S   N+ F  + T+
Sbjct: 88  ITLIDTPGMYSLIPMTEEERFSRELLFTESLDLAI---HVIDAKNLSRMLNLTFQLMETQ 144


>gi|85000959|ref|XP_955198.1| GTP-binding protein [Theileria annulata strain Ankara]
 gi|65303344|emb|CAI75722.1| GTP-binding protein, putative [Theileria annulata]
          Length = 496

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 36/207 (17%)

Query: 177 DFSEEEDV--QNFSSKEVLNDILFLK--NDISSHISQGKL-GEIIRNGYKIV-ILGHSNA 230
           +FSEE  +    +  K     +++L+  N+ SS I   +L  E  R   +IV I+G  N 
Sbjct: 14  NFSEEFRLISPKYGDKHYRKQLIWLEKENEFSSDIKTAQLEHETPRIKNRIVSIVGRPNV 73

Query: 231 GKSSLFNALAKKDV----------AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           GKSS+FN + K  +          ++V D PGTTRD      D  G   +I DT G  + 
Sbjct: 74  GKSSIFNRITKLVIYLNKQKFHYGSVVNDAPGTTRDRQYSIADWNGKYFRIIDTGGYDDD 133

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST---YTE 337
               ++EG+  T ++ E  D +    + N KK     ++++ +    K++ Y       +
Sbjct: 134 QLYSDEEGL--TSMDYEIRDYLF---KHNKKK-----RDLEILLCVNKAESYRRGDILAQ 183

Query: 338 EYDHL-------ISSFTGEGLEELINK 357
           E+  L       +S+  G GL EL++K
Sbjct: 184 EFWKLGLGQPYPVSALHGTGLAELLDK 210


>gi|296133911|ref|YP_003641158.1| GTP-binding protein Era [Thermincola sp. JR]
 gi|296032489|gb|ADG83257.1| GTP-binding protein Era [Thermincola potens JR]
          Length = 300

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 23/199 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + ++G  N GKS+L N    + +AI+++ P TTR+ +   L  E Y V  
Sbjct: 1   MAEGFKSGF-VALIGRPNVGKSTLMNKFLGQKLAIMSEKPQTTRNKINGVLTGENYQVIF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFP- 317
            DT GI +    + +  ++  +  ++  DLIL L E   +             +EI  P 
Sbjct: 60  LDTPGIHKPKHKLGEYMVQVAYNALKEVDLILFLVEATEQEVGTGDRYILEQLQEIKTPV 119

Query: 318 ----KNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKL 369
                 ID +       +   YT          +S+ TG  L+ L++ I   L    K  
Sbjct: 120 ILVINKIDLVQKDAILPVIDAYTARKQFAEVVPVSAITGANLQALLDNILKYLPEGPKYY 179

Query: 370 PFSIPSHKRHLYHLSQTVR 388
           P  I S +   + +++ +R
Sbjct: 180 PDDIISDQPERFVMAELIR 198


>gi|94501121|ref|ZP_01307644.1| predicted GTPase [Oceanobacter sp. RED65]
 gi|94426697|gb|EAT11682.1| predicted GTPase [Oceanobacter sp. RED65]
          Length = 482

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +I ++G  N GKS+L N +  +D  +V D PGTT D + I  +       + DTAG+R
Sbjct: 181 GVRISVVGRPNVGKSTLVNRMLGEDRVVVYDHPGTTMDSIEIPYERNEKPYTLIDTAGVR 240

Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305
              +I    EK  I +    +++A++ +++
Sbjct: 241 RRKNIKEAAEKFSIVKALQAIQDANVCIVV 270



 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           I ++G  N GKS+LFN L +   A+V D+ G TRD       +    Y+V   DT GI  
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADLAGLTRDRKFGAGKVGERDYIV--VDTGGISG 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            +  ++ +  +++F  ++ AD++L L
Sbjct: 63  MEQGLDAKMAEQSFQAMDEADIVLFL 88


>gi|262340851|ref|YP_003283706.1| putative GTP-binding protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272188|gb|ACY40096.1| putative GTP-binding protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 292

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKS+L N+L  + ++I T  P TTR  +   ++   + +  SDT GI   D +
Sbjct: 10  IIGFPNTGKSTLMNSLVGEKLSITTYKPQTTRHRILGIINESNFQIIFSDTPGI--IDPV 67

Query: 284 VEKEGIKRTFLE--VENADLILLLKEI 308
              + I   ++E  +E+AD+IL L EI
Sbjct: 68  YPMQKIMMQYVEKALEDADIILFLTEI 94


>gi|218561451|ref|YP_002394364.1| hypothetical protein ECS88_4890 [Escherichia coli S88]
 gi|218368220|emb|CAR06036.1| conserved hypothetical protein with GTPase domain [Escherichia coli
           S88]
          Length = 311

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 4/114 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 38  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 96

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSK 311
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L + + +
Sbjct: 97  RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWLIKADDR 148


>gi|312878053|ref|ZP_07737990.1| small GTP-binding protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795170|gb|EFR11562.1| small GTP-binding protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 403

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I I G  NAGKSSL NA+  + +AIV+D+PGTT D +   +++   G +V I DTAGI +
Sbjct: 12  IAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKSMEILPLGPVVLI-DTAGI-D 69

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            +  + K  +++T   ++  D+ +L+
Sbjct: 70  DEGALGKLRVEKTLEVLDKTDIAILV 95


>gi|301330436|ref|ZP_07223060.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|300843591|gb|EFK71351.1| conserved hypothetical protein [Escherichia coli MS 78-1]
          Length = 309

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 36  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 94

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 95  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 140


>gi|108763403|ref|YP_631947.1| GTP-binding protein Era [Myxococcus xanthus DK 1622]
 gi|108467283|gb|ABF92468.1| GTP-binding protein Era [Myxococcus xanthus DK 1622]
          Length = 314

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 5/102 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R+G+  +I G  N GKS+L NAL  + +AIV+  P TTR+ +L +    EG +  I DT 
Sbjct: 8   RSGFAALI-GRPNVGKSTLLNALTGEKIAIVSPKPQTTRNRILGVVTRPEGQVAFI-DTP 65

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE--INSKKEIS 315
           GI +    + +  ++      E  DL+L L E   + K E+S
Sbjct: 66  GIHQAKGELNRYMVEVALQAAEEVDLVLFLIEPPASEKPEVS 107


>gi|57545656|gb|AAW51747.1| Aec64 [Escherichia coli]
 gi|291291738|gb|ADD91709.1| YeeP [Escherichia coli]
          Length = 303

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 30  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 88

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 89  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134


>gi|317152019|ref|YP_004120067.1| small GTP-binding protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942270|gb|ADU61321.1| small GTP-binding protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 411

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I + G  NAGKSSL NAL  ++ AIV+D PGTT D +    +L     V   DTAG+ +T
Sbjct: 13  IALAGRRNAGKSSLLNALTGQETAIVSDTPGTTTDPVAKHYELLPLGPVTFYDTAGLDDT 72

Query: 281 DDI 283
            D+
Sbjct: 73  GDL 75


>gi|269115218|ref|YP_003302981.1| GTP-binding Era-like protein [Mycoplasma hominis]
 gi|268322843|emb|CAX37578.1| GTP-binding protein era homolog [Mycoplasma hominis ATCC 23114]
          Length = 294

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 51/88 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+  N +   +++I+TD P TT+D +    + + Y +   DT GI + +
Sbjct: 7   VCLIGRPNVGKSTFLNNVLNFNLSIITDKPQTTKDNIRGIYNDKDYQIIFIDTPGIHKAE 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
           +++ +    +++  +EN+D++L L   N
Sbjct: 67  NLLSERLNSKSYEAIENSDVVLFLTPAN 94


>gi|119492107|ref|ZP_01623560.1| ferrous iron transport protein B [Lyngbya sp. PCC 8106]
 gi|119453317|gb|EAW34482.1| ferrous iron transport protein B [Lyngbya sp. PCC 8106]
          Length = 612

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKS+ F+ +     A V + PG T D+L  ++ + G  V+  D  GI + 
Sbjct: 19  RVALIGMPNTGKSTFFSRITGV-AAYVGNWPGVTVDLLQANVKINGETVEFVDLPGIYDL 77

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +   E E + RTFLE    DL++++
Sbjct: 78  NGYSEDEKVVRTFLERYAIDLVIVV 102


>gi|47600617|emb|CAE55738.1| hypothetical protein YeeP [Escherichia coli Nissle 1917]
          Length = 303

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 30  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 88

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 89  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134


>gi|156741277|ref|YP_001431406.1| GTP-binding protein Era [Roseiflexus castenholzii DSM 13941]
 gi|156232605|gb|ABU57388.1| GTP-binding protein Era [Roseiflexus castenholzii DSM 13941]
          Length = 449

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 31/172 (18%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL  + VAIV+  P TTR  +   L      +   DT G
Sbjct: 160 RSGF-VALVGRPNVGKSTLLNALLGQKVAIVSPKPQTTRTAIRGILTRPDAQIVFVDTPG 218

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-------------FI 323
           I E  + +    +K+    + +AD++ ++ +I        P ++D              I
Sbjct: 219 IHEPRNRLGAYMVKQARRAIPDADVVCMVVDITRP-----PGSLDERIAALVRKASARRI 273

Query: 324 FIGTKSDLY----STYTEEYDHL--------ISSFTGEGLEELINKIKSILS 363
            +  K DL     S   + Y  L        +S+  G GL+ L+++I  +L 
Sbjct: 274 LVLNKIDLRTKRGSDNLQAYRALAPWDMEVAVSALRGHGLDALVDEIVRLLP 325


>gi|15800731|ref|NP_286745.1| putative histone [Escherichia coli O157:H7 EDL933]
 gi|15801136|ref|NP_287153.1| hypothetical protein Z1650 [Escherichia coli O157:H7 EDL933]
 gi|15830649|ref|NP_309422.1| hypothetical protein ECs1395 [Escherichia coli O157:H7 str. Sakai]
 gi|168747217|ref|ZP_02772239.1| putative GTPase [Escherichia coli O157:H7 str. EC4113]
 gi|168754492|ref|ZP_02779499.1| putative GTPase [Escherichia coli O157:H7 str. EC4401]
 gi|168760647|ref|ZP_02785654.1| putative GTPase [Escherichia coli O157:H7 str. EC4501]
 gi|168767670|ref|ZP_02792677.1| putative GTPase [Escherichia coli O157:H7 str. EC4486]
 gi|168773856|ref|ZP_02798863.1| putative GTPase [Escherichia coli O157:H7 str. EC4196]
 gi|168781186|ref|ZP_02806193.1| putative GTPase [Escherichia coli O157:H7 str. EC4076]
 gi|168788892|ref|ZP_02813899.1| putative GTPase [Escherichia coli O157:H7 str. EC869]
 gi|168799290|ref|ZP_02824297.1| putative GTPase [Escherichia coli O157:H7 str. EC508]
 gi|195935404|ref|ZP_03080786.1| hypothetical protein EscherichcoliO157_02937 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806517|ref|ZP_03248854.1| putative GTPase [Escherichia coli O157:H7 str. EC4206]
 gi|208815077|ref|ZP_03256256.1| putative GTPase [Escherichia coli O157:H7 str. EC4045]
 gi|208822030|ref|ZP_03262349.1| putative GTPase [Escherichia coli O157:H7 str. EC4042]
 gi|209400007|ref|YP_002269863.1| putative GTPase [Escherichia coli O157:H7 str. EC4115]
 gi|217328450|ref|ZP_03444532.1| putative GTPase [Escherichia coli O157:H7 str. TW14588]
 gi|254792401|ref|YP_003077238.1| hypothetical protein ECSP_1318 [Escherichia coli O157:H7 str.
           TW14359]
 gi|261227381|ref|ZP_05941662.1| hypothetical protein EscherichiacoliO157_22716 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|12514024|gb|AAG55355.1|AE005276_8 putative histone [Escherichia coli O157:H7 str. EDL933]
 gi|12514542|gb|AAG55765.1|AE005312_11 unknown [Escherichia coli O157:H7 str. EDL933]
 gi|13360855|dbj|BAB34818.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187770513|gb|EDU34357.1| putative GTPase [Escherichia coli O157:H7 str. EC4196]
 gi|188018187|gb|EDU56309.1| putative GTPase [Escherichia coli O157:H7 str. EC4113]
 gi|189001363|gb|EDU70349.1| putative GTPase [Escherichia coli O157:H7 str. EC4076]
 gi|189358140|gb|EDU76559.1| putative GTPase [Escherichia coli O157:H7 str. EC4401]
 gi|189363125|gb|EDU81544.1| putative GTPase [Escherichia coli O157:H7 str. EC4486]
 gi|189368729|gb|EDU87145.1| putative GTPase [Escherichia coli O157:H7 str. EC4501]
 gi|189371494|gb|EDU89910.1| putative GTPase [Escherichia coli O157:H7 str. EC869]
 gi|189378348|gb|EDU96764.1| putative GTPase [Escherichia coli O157:H7 str. EC508]
 gi|208726318|gb|EDZ75919.1| putative GTPase [Escherichia coli O157:H7 str. EC4206]
 gi|208731725|gb|EDZ80413.1| putative GTPase [Escherichia coli O157:H7 str. EC4045]
 gi|208737515|gb|EDZ85198.1| putative GTPase [Escherichia coli O157:H7 str. EC4042]
 gi|209161407|gb|ACI38840.1| putative GTPase [Escherichia coli O157:H7 str. EC4115]
 gi|217318877|gb|EEC27303.1| putative GTPase [Escherichia coli O157:H7 str. TW14588]
 gi|254591801|gb|ACT71162.1| hypothetical protein ECSP_1318 [Escherichia coli O157:H7 str.
           TW14359]
 gi|320189693|gb|EFW64349.1| NgrB [Escherichia coli O157:H7 str. EC1212]
 gi|326343339|gb|EGD67105.1| NgrB [Escherichia coli O157:H7 str. 1125]
 gi|326344805|gb|EGD68553.1| NgrB [Escherichia coli O157:H7 str. 1044]
          Length = 290

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 4/114 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSK 311
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L + + +
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWLIKADDR 127


>gi|301023688|ref|ZP_07187440.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|299880731|gb|EFI88942.1| conserved hypothetical protein [Escherichia coli MS 196-1]
          Length = 138

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|283779176|ref|YP_003369931.1| GTP-binding protein HSR1-like protein [Pirellula staleyi DSM 6068]
 gi|283437629|gb|ADB16071.1| GTP-binding protein HSR1-related protein [Pirellula staleyi DSM
           6068]
          Length = 451

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--------VKIS 272
           +IV+ G  + GKS+L NAL  +DVA V    G T++V  +  D  GY         V + 
Sbjct: 57  EIVVFGEISVGKSALINALIGRDVAAVDVRGGWTKEVWQVAWDGAGYCLPGLGVSQVVLV 116

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLL--KEINSKKEISFPKNIDF----IFIG 326
           DT GI E       E   R     + ADL+L +   + N  +  S    + F    I + 
Sbjct: 117 DTPGINEVGGSTRGE---RAREAAQRADLLLFVTDSDFNEVEHDSLSSLVTFHKPIIVVL 173

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           +KSDLYS   ++   L+   T E L  L+
Sbjct: 174 SKSDLYS--PDQKARLLHVLTQERLVGLV 200


>gi|24375414|ref|NP_719457.1| GTP-binding protein [Shewanella oneidensis MR-1]
 gi|24350252|gb|AAN56901.1|AE015824_12 GTP-binding protein [Shewanella oneidensis MR-1]
          Length = 394

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           Y I ++G  N+GKSSL N LA + ++IV+DI GTT D +    +L+    V   DTAGI
Sbjct: 3   YHIALVGRRNSGKSSLLNMLAGQQISIVSDIKGTTTDAVAKAYELQPLGPVTFYDTAGI 61


>gi|320663345|gb|EFX30647.1| hypothetical protein ECO5905_15638 [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 290

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G S AGKSSL NAL + +V  V+D+   TR+V    L+  G+ + I+D  G+ E+ D 
Sbjct: 41  IMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRDR 100

Query: 284 -VEKEGIKRTFLEVENADLILLL 305
             E E + R  L     DL+L L
Sbjct: 101 DTEYEALYRDIL--PELDLVLWL 121


>gi|218707941|ref|YP_002415460.1| hypothetical protein ECUMN_4880 [Escherichia coli UMN026]
 gi|331650750|ref|ZP_08351778.1| conserved hypothetical protein [Escherichia coli M718]
 gi|218435038|emb|CAR15991.1| conserved hypothetical protein with GTPase domain [Escherichia coli
           UMN026]
 gi|331051204|gb|EGI23253.1| conserved hypothetical protein [Escherichia coli M718]
          Length = 303

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 30  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 88

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 89  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134


>gi|225873315|ref|YP_002754774.1| GTP-binding protein Era [Acidobacterium capsulatum ATCC 51196]
 gi|225791445|gb|ACO31535.1| GTP-binding protein Era [Acidobacterium capsulatum ATCC 51196]
          Length = 346

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 11/100 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--- 272
           +R+G+ + I+G  NAGKS+L NALA + VAIVT  P TTR+ +   +++     K     
Sbjct: 1   MRSGF-VSIVGRPNAGKSTLLNALAGEKVAIVTSKPQTTRNRIHGIVEVPAQNTKAGKRP 59

Query: 273 -------DTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
                  DT G+ +  + +++  ++     +E  D+++ +
Sbjct: 60  AAQIVFVDTPGVHKPGNTLDRRMLQEVHAALETRDIVIWM 99


>gi|170683241|ref|YP_001744300.1| putative GTPase [Escherichia coli SMS-3-5]
 gi|170520959|gb|ACB19137.1| putative GTPase [Escherichia coli SMS-3-5]
          Length = 290

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|318042122|ref|ZP_07974078.1| GTP-binding protein Era-like protein [Synechococcus sp. CB0101]
          Length = 330

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 24/176 (13%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           G+  E  R+G+ + ++G  N GKS+L N L  + VAI + I  TTR+ L   L      +
Sbjct: 31  GQSPEGYRSGF-VALVGRPNVGKSTLLNQLVGEKVAITSPIAQTTRNRLRAILTTPEAQL 89

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLIL------------------LLKEINSK 311
            + DT GI +   ++ +  ++     +   DL+L                  LL    + 
Sbjct: 90  VLVDTPGIHKPHHLLGERLVQTARGAIGEVDLVLLLVDGSQPAGRGDGFIVELLSHARAP 149

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYD----HLISSFTGEGLEELINKIKSILS 363
             ++  K+ D +      +L ++Y E       H +S+  G+G E L++ + + L 
Sbjct: 150 VHVALNKH-DLVDPAQAIELEASYRELVPDWPLHPVSALNGDGTEALVSALSAALP 204


>gi|326331287|ref|ZP_08197579.1| ribosome-associated GTPase EngA [Nocardioidaceae bacterium Broad-1]
 gi|325950920|gb|EGD42968.1| ribosome-associated GTPase EngA [Nocardioidaceae bacterium Broad-1]
          Length = 461

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +I ++G  N GKSSL N LAK++ A+V ++ GTT D +   ++L G   +  DTAGIR+
Sbjct: 202 RIALVGKPNVGKSSLLNKLAKEERAVVDNVAGTTVDPVDELIELGGREWRFIDTAGIRK 260



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D D  G    + DT G
Sbjct: 28  VAVVGRPNVGKSTLVNRIIGRREAVVQDVPGVTRDRVSYDADWNGKAFTLVDTGG 82


>gi|317129116|ref|YP_004095398.1| GTP-binding proten HflX [Bacillus cellulosilyticus DSM 2522]
 gi|315474064|gb|ADU30667.1| GTP-binding proten HflX [Bacillus cellulosilyticus DSM 2522]
          Length = 420

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 32/217 (14%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           + DI      I SH  + +        ++I ++G++NAGKS+L + L++ D+  V D   
Sbjct: 169 MTDIRMQLEQIVSHRERYRARRKKNQAFQISLVGYTNAGKSTLLHRLSEADI-YVEDQLF 227

Query: 253 TTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-------- 303
            T D  T  + L  G  V ++DT G  +          + T  EV+ ADLIL        
Sbjct: 228 ATLDPTTKKIKLPSGMEVLLTDTVGFIQQLPTTLIAAFRSTLEEVKEADLILHVVDAANP 287

Query: 304 -----------LLKEINSKKEISFPKNIDFIFIGTKSDL----YSTYTEEYDHLISSFTG 348
                      LL+E+ ++K       I  + +  K DL    + +YT+    LISS   
Sbjct: 288 DYPNHEKTVYKLLEELEAEK-------IPVLTVYNKRDLLHGDFFSYTKSASILISSKEK 340

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             L++L  KI+S++   F    F + +++    H  Q
Sbjct: 341 ADLDKLQEKIESVMEEIFSPYIFHVDANEGKWLHRLQ 377


>gi|331673511|ref|ZP_08374278.1| conserved hypothetical protein [Escherichia coli TA280]
 gi|331069322|gb|EGI40710.1| conserved hypothetical protein [Escherichia coli TA280]
          Length = 297

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 24  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 82

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 83  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 128


>gi|193063029|ref|ZP_03044121.1| putative GTPase [Escherichia coli E22]
 gi|260845663|ref|YP_003223441.1| hypothetical protein ECO103_3582 [Escherichia coli O103:H2 str.
           12009]
 gi|260846939|ref|YP_003224717.1| hypothetical protein ECO103_4896 [Escherichia coli O103:H2 str.
           12009]
 gi|192931288|gb|EDV83890.1| putative GTPase [Escherichia coli E22]
 gi|257760810|dbj|BAI32307.1| hypothetical protein ECO103_3582 [Escherichia coli O103:H2 str.
           12009]
 gi|257762086|dbj|BAI33583.1| hypothetical protein ECO103_4896 [Escherichia coli O103:H2 str.
           12009]
 gi|320667285|gb|EFX34248.1| hypothetical protein ECOSU61_09164 [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 290

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PKLDLVLWL 121


>gi|193069461|ref|ZP_03050415.1| putative GTPase [Escherichia coli E110019]
 gi|260854503|ref|YP_003228394.1| hypothetical protein ECO26_1352 [Escherichia coli O26:H11 str.
           11368]
 gi|192957209|gb|EDV87658.1| putative GTPase [Escherichia coli E110019]
 gi|257753152|dbj|BAI24654.1| hypothetical protein ECO26_1352 [Escherichia coli O26:H11 str.
           11368]
 gi|323156819|gb|EFZ42953.1| hypothetical protein ECEPECA14_1269 [Escherichia coli EPECa14]
          Length = 290

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 4/114 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSK 311
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L + + +
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWLIKADDR 127


>gi|333006081|gb|EGK25595.1| hypothetical protein SFVA6_1522 [Shigella flexneri VA-6]
          Length = 290

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|291283231|ref|YP_003500049.1| hypothetical protein G2583_2513 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291284317|ref|YP_003501135.1| hypothetical protein G2583_3660 [Escherichia coli O55:H7 str.
           CB9615]
 gi|290763104|gb|ADD57065.1| hypothetical protein G2583_2513 [Escherichia coli O55:H7 str.
           CB9615]
 gi|290764190|gb|ADD58151.1| hypothetical protein G2583_3660 [Escherichia coli O55:H7 str.
           CB9615]
 gi|320641438|gb|EFX10878.1| hypothetical protein ECO5101_07272 [Escherichia coli O157:H7 str.
           G5101]
 gi|320646799|gb|EFX15674.1| hypothetical protein ECO9389_10395 [Escherichia coli O157:H- str.
           493-89]
          Length = 290

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G S AGKSSL NAL + +V  V+D+   TR+V    L+  G+ + I+D  G+ E+ D 
Sbjct: 41  IMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRDR 100

Query: 284 -VEKEGIKRTFLEVENADLILLL 305
             E E + R  L     DL+L L
Sbjct: 101 DTEYEALYRDIL--PELDLVLWL 121


>gi|308176886|ref|YP_003916292.1| GTPase [Arthrobacter arilaitensis Re117]
 gi|307744349|emb|CBT75321.1| putative GTPase [Arthrobacter arilaitensis Re117]
          Length = 553

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 27/179 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L    V    A+   +  T R   T D    G    ++DT G 
Sbjct: 334 VAIAGYTNAGKSSLLNRLTNAGVLVENALFATLDPTVRQSATED----GLTYTLADTVGF 389

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPK---------NIDFIFI 325
                    E  + T  E+ ++DLIL +      + + +I   +         NI  I +
Sbjct: 390 VSNLPTQLVEAFRSTLEEIADSDLILHVVDGSHPDPEGQIQAVRTVLGEVDALNIPEIIV 449

Query: 326 GTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
             K+D+   +        E    ++S+ TGEG+EEL+ KI S +     +L   IP ++
Sbjct: 450 VNKADVADPFVIERIRNRESNTAVVSAHTGEGIEELLEKISSSIPRPGIQLEVLIPYNR 508


>gi|30064306|ref|NP_838477.1| hypothetical protein S3193 [Shigella flexneri 2a str. 2457T]
 gi|30042563|gb|AAP18287.1| hypothetical protein S3193 [Shigella flexneri 2a str. 2457T]
 gi|281602339|gb|ADA75323.1| putative GTPase [Shigella flexneri 2002017]
 gi|284924234|emb|CBG37334.1| putative ATP/GTP-binding protein [Escherichia coli 042]
 gi|313648057|gb|EFS12503.1| uncharacterized protein ykfA [Shigella flexneri 2a str. 2457T]
 gi|315614830|gb|EFU95468.1| uncharacterized protein ykfA [Escherichia coli 3431]
 gi|332749827|gb|EGJ80240.1| hypothetical protein SF274771_5129 [Shigella flexneri 2747-71]
 gi|332765421|gb|EGJ95639.1| hypothetical protein SF293071_3503 [Shigella flexneri 2930-71]
          Length = 290

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|27379603|ref|NP_771132.1| GTP-binding protein HFLX [Bradyrhizobium japonicum USDA 110]
 gi|27352755|dbj|BAC49757.1| GTP-binding protein HFLX [Bradyrhizobium japonicum USDA 110]
          Length = 437

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 31/187 (16%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y++V L G++NAGKS+LFN L + DV    D+   T D     L L  G    +SDT
Sbjct: 199 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRALTLPHGGKAMLSDT 257

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---------- 324
            G             + T  EV  AD+IL +++I+ +   +   ++D +           
Sbjct: 258 VGFISNLPTQLIAAFRATLEEVLEADVILHVRDISHEDAEAQQSDVDAVLRQLGINPDDS 317

Query: 325 -----IGTKSDLYSTYTEE----------YDH---LISSFTGEGLEELINKIKSILSNKF 366
                +  K D Y     E           DH   L+S+ +GEG++ L+  I+  L+ K 
Sbjct: 318 GRIIEVWNKIDRYDAEQREELLNIAARRPEDHPAMLVSAVSGEGVDALLAAIEERLAAKR 377

Query: 367 KKLPFSI 373
             L  SI
Sbjct: 378 TTLDLSI 384


>gi|89095338|ref|ZP_01168256.1| GTP-binding protein EngA [Oceanospirillum sp. MED92]
 gi|89080413|gb|EAR59667.1| GTP-binding protein EngA [Oceanospirillum sp. MED92]
          Length = 479

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 6/88 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL----EGYLVKISDTAGI 277
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  L    + Y+V   DT GI
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRKYGEGRLANEEQDYIV--VDTGGI 62

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305
              +  ++ E  K++   V+ AD++L +
Sbjct: 63  TGDEQGIDYEMAKQSLQAVDEADVVLFI 90



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS+L N +  +D  +V D  GTTRD + I    +     + DTAG+R  
Sbjct: 183 KIAVVGRPNVGKSTLVNRMLGEDRVVVFDKAGTTRDSVYIPYVRDDKNYTLIDTAGVRRR 242

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
            +I    EK  I +T   V +A +++ +
Sbjct: 243 KNITEAAEKFSIVKTLQAVNDAHVVVFV 270


>gi|307136928|ref|ZP_07496284.1| hypothetical protein EcolH7_02203 [Escherichia coli H736]
 gi|323938805|gb|EGB35051.1| hypothetical protein ERCG_00058 [Escherichia coli E1520]
          Length = 290

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|153809863|ref|ZP_01962531.1| hypothetical protein RUMOBE_00244 [Ruminococcus obeum ATCC 29174]
 gi|149834041|gb|EDM89121.1| hypothetical protein RUMOBE_00244 [Ruminococcus obeum ATCC 29174]
          Length = 408

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 20/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           I   G  NAGKSS+ NA+  +D+AIV+ + GTT D +  T++L   G ++ I DT GI +
Sbjct: 14  ISFFGKRNAGKSSVINAVTGQDLAIVSSVMGTTTDPVYKTMELLPLGPVMVI-DTPGIDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK---EISF-----PKNIDFIFIGTKSDL 331
             ++     +++++  +   D+ +L+ +  + K   E+        K I ++ +  K DL
Sbjct: 73  EGELGALR-VRKSYQVLNKTDIAILVIDSTAGKGEEELELIHRFHKKGIPYLIVYNKIDL 131

Query: 332 YST--------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            ST             + L+S+  G  ++EL  KI S+ S    K P 
Sbjct: 132 LSTEKIKDLAMSVRAGEVLVSASDGMNIQELKEKIASLKSEDTHKYPL 179


>gi|118579918|ref|YP_901168.1| small GTP-binding protein [Pelobacter propionicus DSM 2379]
 gi|118502628|gb|ABK99110.1| iron-only hydrogenase maturation protein HydF [Pelobacter
           propionicus DSM 2379]
          Length = 412

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 18/170 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N GKSSL N+L ++D A+V+D+ GTT D +   ++L     V   DTAG
Sbjct: 8   NRLHIGLFGRRNVGKSSLLNSLTRQDAALVSDVAGTTTDPIEKPMELLPLGPVLFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFP----KNIDFIFIGTKS 329
           I +T  + E   ++RT   ++  D+ LL+    E    +E+       + I  I +  KS
Sbjct: 68  IDDTGALGELR-VQRTRQVLDRVDVGLLVSIAGEWGEFEEVILAELGGRGIPVIVVFNKS 126

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           D  +        L          S+  GEGL  L   +     + F   P
Sbjct: 127 DCCAVDDGRLVALHERGALCVVTSAPRGEGLPALREALIQCAPDGFITPP 176


>gi|218246171|ref|YP_002371542.1| small GTP-binding protein [Cyanothece sp. PCC 8801]
 gi|218166649|gb|ACK65386.1| small GTP-binding protein [Cyanothece sp. PCC 8801]
          Length = 531

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 20/242 (8%)

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           VQ    K     +L    +I + +++G+L        K+V+ G  +AGK+SL NAL  + 
Sbjct: 103 VQQIQDKVTQKALLNRSQEIEASLTRGEL--------KVVVFGTGSAGKTSLINALIGEM 154

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETD-DIVEKEGIKRTFLEVENAD 300
           V  V    GTT+   T  L L G    + I+DT GI E   +  ++E + R       AD
Sbjct: 155 VGNVEATMGTTQIGETYRLKLRGVSQEILITDTPGILEAGVEGTQREKLARQL--ATEAD 212

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDL----YSTYTEEYDHLISSFTGEGLEELIN 356
           L+L + + + ++    P  I    IG +S L       YTE+   LI     E +++LI 
Sbjct: 213 LLLFVVDNDLRQSEYDPLQI-LAKIGKRSLLIFNKIDLYTEDEITLIKQQLQERVKDLIG 271

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           +   IL     + PF + + K  +      +  ++  ++  +  G D+IA+N+ L S  L
Sbjct: 272 ESDIILIAANPQ-PFEVETGK-MIKAEPDIIPLIKRLAVVLRAEGEDLIADNILLQSQRL 329

Query: 417 GK 418
           G+
Sbjct: 330 GE 331


>gi|309704622|emb|CBJ03972.1| putative MMR_HS1 domain protein [Escherichia coli ETEC H10407]
          Length = 290

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 4/114 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSK 311
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L + + +
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWLIKADDR 127


>gi|331675665|ref|ZP_08376410.1| conserved hypothetical protein [Escherichia coli TA280]
 gi|331067159|gb|EGI38569.1| conserved hypothetical protein [Escherichia coli TA280]
          Length = 276

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 3   LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 61

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 62  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 107


>gi|294628589|ref|ZP_06707149.1| ribosome-associated GTPase EngA [Streptomyces sp. e14]
 gi|292831922|gb|EFF90271.1| ribosome-associated GTPase EngA [Streptomyces sp. e14]
          Length = 494

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N +A ++  +V ++ GTTRD +   ++L G   K  DTAGIR+
Sbjct: 232 RVALIGRPNVGKSSLLNKVAGEERVVVDELAGTTRDPVDELIELGGKTWKFVDTAGIRK 290



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G
Sbjct: 57  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGG 111


>gi|323968922|gb|EGB64247.1| small GTP-binding protein containing protein [Escherichia coli
           TA007]
          Length = 243

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G S AGKSSL NAL + +V  V+D+   TR+V    L   G  + I+D  G+ E+ 
Sbjct: 39  IGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFRLSGHGCSMVITDLPGVGESR 98

Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305
           D   E E + R  L     DL+L L
Sbjct: 99  DRDAEYEALYRDIL--PELDLVLWL 121


>gi|284047992|ref|YP_003398331.1| GTP-binding protein Era [Acidaminococcus fermentans DSM 20731]
 gi|283952213|gb|ADB47016.1| GTP-binding protein Era [Acidaminococcus fermentans DSM 20731]
          Length = 308

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 50/91 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L  + VAI++D P TTR+ +   L  E   +   DT G+ +  
Sbjct: 14  VAVVGRPNAGKSTLVNHLVGEKVAIISDRPQTTRNRILSILSTEEAQMVFLDTPGLHKPQ 73

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           D + +  ++     ++  D++L + + + K+
Sbjct: 74  DKLGEHMVQAALNAIKEVDVVLFVVDASEKR 104


>gi|223994975|ref|XP_002287171.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976287|gb|EED94614.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 460

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGY--LVKISDT 274
           + I+G  N GKSSL N +   + AIV+D+ GTTRD +   +     D EG   + +  DT
Sbjct: 184 VAIIGRPNVGKSSLINTIFGSNRAIVSDVAGTTRDSIDAIMERPSSDPEGLPTIYRFVDT 243

Query: 275 AGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           AGIR    I    E   + R    +  AD++LL+
Sbjct: 244 AGIRRKGKIEFGPEFFMVNRALRAIRRADVVLLV 277



 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 222 IVILGHSNAGKSSLFNALA--KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
           I ++G  N GKS+L N LA  +   AIV D  G TRD    + +  G   ++ DT G+  
Sbjct: 3   IAVVGRPNVGKSALVNRLAGTQSGGAIVADEEGITRDRTYRNAEFLGEAFQLVDTGGLVF 62

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305
            + D +  KE  ++  + +E +  ++L+
Sbjct: 63  DDNDALFAKEIREQAMIAIEESAGVILV 90


>gi|317152308|ref|YP_004120356.1| small GTP-binding protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942559|gb|ADU61610.1| small GTP-binding protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 411

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I + G  NAGKSSL NAL  ++ AIV+D PGTT D +    +L     V   DTAG+ +T
Sbjct: 13  IALAGRRNAGKSSLLNALTGQETAIVSDTPGTTTDPVAKHYELLPLGPVTFYDTAGLDDT 72

Query: 281 DDI 283
            D+
Sbjct: 73  GDL 75


>gi|47154997|emb|CAE85196.1| YeeP protein [Escherichia coli]
          Length = 353

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 80  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 138

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 139 RFRLSGHGHNMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 184


>gi|52786163|ref|YP_091992.1| GTP-binding protein EngA [Bacillus licheniformis ATCC 14580]
 gi|163119516|ref|YP_079584.2| GTP-binding protein EngA [Bacillus licheniformis ATCC 14580]
 gi|319645250|ref|ZP_07999483.1| GTP-binding protein engA [Bacillus sp. BT1B_CT2]
 gi|81825274|sp|Q65I15|DER_BACLD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|52348665|gb|AAU41299.1| YphC [Bacillus licheniformis ATCC 14580]
 gi|145903023|gb|AAU23946.2| GTP-binding protein essential for cell growth [Bacillus
           licheniformis ATCC 14580]
 gi|317393059|gb|EFV73853.1| GTP-binding protein engA [Bacillus sp. BT1B_CT2]
          Length = 436

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNHDFNLIDTGGIEVGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + +E AD+I+ +
Sbjct: 66  EPFLAQIRHQAEIAMEEADVIIFM 89



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  N GKSSL NA+  ++  IV++I GTTRD +            I DTAG+R+ 
Sbjct: 177 QFCLIGRPNVGKSSLVNAMIGEERVIVSNIAGTTRDAIDTRFTYNQRDFVIVDTAGMRKK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    EK  + R    ++ ++++ ++
Sbjct: 237 GKVYEATEKYSVLRALKAIDRSEVVCVV 264


>gi|193061960|ref|ZP_03043056.1| putative GTPase [Escherichia coli E22]
 gi|194426328|ref|ZP_03058883.1| putative GTPase [Escherichia coli B171]
 gi|19908362|gb|AAL99256.1| unknown [Escherichia coli]
 gi|192932180|gb|EDV84778.1| putative GTPase [Escherichia coli E22]
 gi|194415636|gb|EDX31903.1| putative GTPase [Escherichia coli B171]
 gi|195183165|dbj|BAG66710.1| putative small GTP-binding protein [Escherichia coli O111:H-]
 gi|323162623|gb|EFZ48469.1| hypothetical protein ECE128010_1182 [Escherichia coli E128010]
          Length = 290

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|333005525|gb|EGK25043.1| hypothetical protein SFK218_1677 [Shigella flexneri K-218]
          Length = 290

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|312794014|ref|YP_004026937.1| small gtp-binding protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181154|gb|ADQ41324.1| small GTP-binding protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 403

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I I G  NAGKSSL NA+  + +AIV+D+PGTT D +   +++   G +V I DTAGI +
Sbjct: 12  IAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKAMEILPLGPVVLI-DTAGI-D 69

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            +  + K  +++T   ++  D+ +L+
Sbjct: 70  DEGALGKLRVEKTLEVLDKTDIAILV 95


>gi|225630483|ref|YP_002727274.1| GTP-binding protein Era [Wolbachia sp. wRi]
 gi|225592464|gb|ACN95483.1| GTP-binding protein Era [Wolbachia sp. wRi]
          Length = 294

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 23/165 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G  NAGKS+L N++  K +AIVT    TTR  +          V  +D+ GI   +
Sbjct: 9   VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQVVFTDSPGIFSAE 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFPKNI---------DFIFIGTKSDL 331
             +EK  +K  +  V+++D+ LLL ++ N  K I   K I           I +  K+DL
Sbjct: 69  TKLEKALVKSAWSAVKDSDITLLLVDVSNYLKNIERIKTIFMRLQRTKGRCILVINKTDL 128

Query: 332 YST-------------YTEEYDHLISSFTGEGLEELINKIKSILS 363
                           Y  E   +IS+   +GL +L+N +  + S
Sbjct: 129 VKRPELKMAHEHLNLLYKFEKVFMISALKNDGLSDLMNYLSEVAS 173


>gi|77919547|ref|YP_357362.1| ferrous iron transport protein B [Pelobacter carbinolicus DSM 2380]
 gi|77545630|gb|ABA89192.1| ferrous iron transport protein B [Pelobacter carbinolicus DSM 2380]
          Length = 654

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KIV++G+ N GKS LFNAL      +V++ PGT+ +V     ++EG   ++ DT G+   
Sbjct: 13  KIVLVGNPNVGKSVLFNALTGA-YTVVSNYPGTSVEVSRGCCEIEGVSYEVLDTPGMYSL 71

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
             I E+E + R  L  E+A  ++
Sbjct: 72  LPITEEERVAREILLKESAHTVV 94


>gi|46580178|ref|YP_010986.1| GTP-binding protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46449595|gb|AAS96245.1| GTP-binding protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233831|gb|ADP86685.1| small GTP-binding protein [Desulfovibrio vulgaris RCH1]
          Length = 410

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           I I G  N GKSSL NAL ++ V+IV+  PGTT D +  T+++   G +V I DTAGI +
Sbjct: 12  IGIYGRRNVGKSSLLNALTRQTVSIVSATPGTTTDPVEKTMEMAPIGPVVFI-DTAGIDD 70

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE 307
           T D+       RT    +  DL L+  E
Sbjct: 71  TGDLGLMRS-DRTRQMFDRTDLALVASE 97


>gi|329903455|ref|ZP_08273477.1| Ferrous iron transport protein B [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548382|gb|EGF33064.1| Ferrous iron transport protein B [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 595

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I +LG  NAGKS+ FN L     A V + PG T D+L   + +   +V+  D  GI + 
Sbjct: 3   RIALLGMPNAGKSTFFNRLTGAS-ARVGNWPGVTVDLLGAKVLIGASMVEAIDLPGIYDL 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
               E E + R FL +   DL L++  IN+ +
Sbjct: 62  QGFSEDEEVVRRFLSLNPVDLALVV--INTAQ 91


>gi|260858460|ref|YP_003232351.1| hypothetical protein ECO26_5485 [Escherichia coli O26:H11 str.
           11368]
 gi|257757109|dbj|BAI28611.1| hypothetical protein ECO26_5485 [Escherichia coli O26:H11 str.
           11368]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|304319918|ref|YP_003853561.1| GTP-binding protein EngA [Parvularcula bermudensis HTCC2503]
 gi|303298821|gb|ADM08420.1| GTP-binding protein EngA [Parvularcula bermudensis HTCC2503]
          Length = 459

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKS+LFN LA + +A+V D PG TRD   I+       + + DTAG+ E 
Sbjct: 4   RLAIIGRPNVGKSTLFNRLAGRKLALVHDEPGVTRDRREIEATFGDLDLTLIDTAGLEEA 63



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL----DLEGYLVKIS 272
           R   ++ I+G  NAGKS+L N L  +D  +     G TRD ++ +     D   + VK+ 
Sbjct: 184 RKPLRLAIVGRPNAGKSTLVNQLLGEDRVLTGPEAGITRDTISAEWRYVADDRDWPVKLF 243

Query: 273 DTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           DTAG+R   +  D +EK  +  T   +  A+++ LL
Sbjct: 244 DTAGLRRRAKVQDKLEKLSVGDTLRAIRFAEVVALL 279


>gi|157156541|ref|YP_001464348.1| putative GTPase [Escherichia coli E24377A]
 gi|157078571|gb|ABV18279.1| putative GTPase [Escherichia coli E24377A]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|194432361|ref|ZP_03064648.1| putative GTPase [Shigella dysenteriae 1012]
 gi|297521934|ref|ZP_06940320.1| hypothetical protein EcolOP_30123 [Escherichia coli OP50]
 gi|15808742|gb|AAL08471.1| unknown [Shigella flexneri 2a]
 gi|194419248|gb|EDX35330.1| putative GTPase [Shigella dysenteriae 1012]
 gi|333009623|gb|EGK29075.1| hypothetical protein SFK272_1251 [Shigella flexneri K-272]
 gi|333020579|gb|EGK39839.1| hypothetical protein SFK227_0562 [Shigella flexneri K-227]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|323938863|gb|EGB35085.1| hypothetical protein ERDG_04520 [Escherichia coli E482]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|70946047|ref|XP_742778.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521948|emb|CAH81720.1| hypothetical protein PC000779.04.0 [Plasmodium chabaudi chabaudi]
          Length = 139

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK--DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +IIRN   I I+G  N GKS++FN L +K  + +IV D P +TRD      + +GY  ++
Sbjct: 21  KIIRNLPLISIIGRPNVGKSTIFNRLTRKFQEGSIVLDKP-STRDKFYGKSEWDGYRFEV 79

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            DT G+   D+   KE   +  L +E + ++L +
Sbjct: 80  VDTGGLLFEDENFSKEIRDQILLALEESSVVLFV 113


>gi|157161492|ref|YP_001458810.1| putative GTPase [Escherichia coli HS]
 gi|157067172|gb|ABV06427.1| putative GTPase [Escherichia coli HS]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|294011701|ref|YP_003545161.1| GTP-binding protein Era [Sphingobium japonicum UT26S]
 gi|292675031|dbj|BAI96549.1| GTP-binding protein Era [Sphingobium japonicum UT26S]
          Length = 302

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 27/175 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  NAGKS+L NAL  + VAI +    TTR  V+ + ++ +  +V + DT GI + 
Sbjct: 13  IAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQMV-LVDTPGIFQP 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE----INSKKE------ISFPKNIDFIF----IG 326
              +++  ++  +   + ADLI L+ +    + +K E       + P+    I     I 
Sbjct: 72  KRRLDRAMVQAAWGGAQGADLIALVVDGKAGLGAKMEPIVGALAARPEKKWLILNKVDIA 131

Query: 327 TKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            K  L       Y+ L       +S+ TG+GL EL    K+  +    + P+  P
Sbjct: 132 IKEKLLVHTQRLYEQLDIAETFFVSAATGDGLPEL----KTAFARAMPEGPWHFP 182


>gi|87199823|ref|YP_497080.1| GTP-binding protein Era [Novosphingobium aromaticivorans DSM 12444]
 gi|87135504|gb|ABD26246.1| GTP-binding protein Era [Novosphingobium aromaticivorans DSM 12444]
          Length = 297

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRET 280
           + +LG  NAGKS+L NAL  + VAIV+    TTR  ++ I L+ E  ++ ++DT G+ E 
Sbjct: 8   VAVLGAPNAGKSTLVNALVGQKVAIVSAKAQTTRARLMGIALEGEAQII-LADTPGLFEP 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
              +++  +   +   + AD ILL+ +   KK
Sbjct: 67  RRRLDRAMVSAAWDGAQEADAILLVVDARKKK 98


>gi|26247146|ref|NP_753186.1| hypothetical protein c1272 [Escherichia coli CFT073]
 gi|227888003|ref|ZP_04005808.1| possible GTP-binding protein [Escherichia coli 83972]
 gi|26107547|gb|AAN79746.1|AE016759_20 Hypothetical protein yeeP [Escherichia coli CFT073]
 gi|227834999|gb|EEJ45465.1| possible GTP-binding protein [Escherichia coli 83972]
 gi|307553020|gb|ADN45795.1| conserved hypothetical protein containing GTP-binding domain
           [Escherichia coli ABU 83972]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|191167163|ref|ZP_03028983.1| putative GTPase [Escherichia coli B7A]
 gi|293402935|ref|ZP_06647032.1| yeeP protein [Escherichia coli FVEC1412]
 gi|298378463|ref|ZP_06988347.1| yeeP protein [Escherichia coli FVEC1302]
 gi|312966004|ref|ZP_07780230.1| uncharacterized protein yfjP [Escherichia coli 2362-75]
 gi|190902820|gb|EDV62549.1| putative GTPase [Escherichia coli B7A]
 gi|291429850|gb|EFF02864.1| yeeP protein [Escherichia coli FVEC1412]
 gi|298280797|gb|EFI22298.1| yeeP protein [Escherichia coli FVEC1302]
 gi|312289247|gb|EFR17141.1| uncharacterized protein yfjP [Escherichia coli 2362-75]
 gi|323950630|gb|EGB46508.1| hypothetical protein ERKG_02958 [Escherichia coli H252]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|320662211|gb|EFX29612.1| hypothetical protein ECO5905_10093 [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PKLDLVLWL 121


>gi|89054660|ref|YP_510111.1| GTP-binding protein EngA [Jannaschia sp. CCS1]
 gi|122498632|sp|Q28QC6|DER_JANSC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|88864209|gb|ABD55086.1| Small GTP-binding protein domain [Jannaschia sp. CCS1]
          Length = 479

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  + +A+V D PG TRD+      L      + DTAG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGRKLALVDDQPGVTRDLREGAARLADLRFTVIDTAGLED 62

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEINS 310
             DD +E    + T   V  AD  L + +  +
Sbjct: 63  ANDDSLEGRMRRLTERAVSMADATLFVMDARA 94



 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  NAGKS+L N +  +D  +     G TRD + +  + +   ++I DTAG+R+ 
Sbjct: 192 QIAVVGRPNAGKSTLINQIIGEDRLLTGPEAGITRDAIGLTFEWDDVPMRIFDTAGMRKR 251

Query: 281 DDIVEK 286
             + EK
Sbjct: 252 AKVQEK 257


>gi|225182107|ref|ZP_03735535.1| GTP-binding protein Era [Dethiobacter alkaliphilus AHT 1]
 gi|225167194|gb|EEG76017.1| GTP-binding protein Era [Dethiobacter alkaliphilus AHT 1]
          Length = 302

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + R+G+ I ++G  N GKS+L NA   + +AI++D P TTR+ +   L  + Y     DT
Sbjct: 7   MFRSGF-IALIGRPNVGKSTLMNAFVGEKMAIISDKPQTTRNQIRGILTADDYQAVFLDT 65

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + ++ ++     ++  DLIL L
Sbjct: 66  PGIHKPQHKLGEKMVQVAVRTLQEVDLILFL 96


>gi|120602432|ref|YP_966832.1| small GTP-binding protein [Desulfovibrio vulgaris DP4]
 gi|120562661|gb|ABM28405.1| iron-only hydrogenase maturation protein HydF [Desulfovibrio
           vulgaris DP4]
          Length = 410

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           I I G  N GKSSL NAL ++ V+IV+  PGTT D +  T+++   G +V I DTAGI +
Sbjct: 12  IGIYGRRNVGKSSLLNALTRQTVSIVSATPGTTTDPVEKTMEMAPIGPVVFI-DTAGIDD 70

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE 307
           T D+       RT    +  DL L+  E
Sbjct: 71  TGDLGLMRS-DRTRQMFDRTDLALVASE 97


>gi|330791039|ref|XP_003283602.1| hypothetical protein DICPUDRAFT_6420 [Dictyostelium purpureum]
 gi|325086462|gb|EGC39851.1| hypothetical protein DICPUDRAFT_6420 [Dictyostelium purpureum]
          Length = 461

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 4/89 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRE 279
           +I I+G  NAGKSSL N +  +  +IV+DIPGTT D +  + L  + + + + DTAGIR 
Sbjct: 197 RISIVGKPNAGKSSLLNKIIDEQRSIVSDIPGTTHDPVDCNFLWRDKHELCLVDTAGIRR 256

Query: 280 --TDDI-VEKEGIKRTFLEVENADLILLL 305
             T  + +EK  +      +E + ++ L+
Sbjct: 257 RSTHKVGLEKSSVLWALKSIEKSHVVFLV 285



 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 222 IVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE 279
           I I+G  N GKS++FN + + +  A+V +IPGTTRD    +  L G    + DT G I E
Sbjct: 3   IAIIGKPNVGKSTIFNRIIQGQRQALVEEIPGTTRDRYYGEAFLYGREFILVDTGGLIGE 62

Query: 280 TDDIVEKEGIKRTF-----LEVENADLILLLKEINS 310
             D  EK+  ++       + +E +D IL + +  S
Sbjct: 63  PKDEGEKDQFQQVIHSQAEIAIEESDAILFVLDYKS 98


>gi|218706547|ref|YP_002414066.1| hypothetical protein ECUMN_3399 [Escherichia coli UMN026]
 gi|254038095|ref|ZP_04872153.1| YeeP protein [Escherichia sp. 1_1_43]
 gi|218433644|emb|CAR14558.1| conserved hypothetical protein with GTPase domain [Escherichia coli
           UMN026]
 gi|226839719|gb|EEH71740.1| YeeP protein [Escherichia sp. 1_1_43]
          Length = 303

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 30  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVLAGTREVQ 88

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 89  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134


>gi|94269340|ref|ZP_01291433.1| probable tRNA modification GTPase (TrmE) [delta proteobacterium
           MLMS-1]
 gi|93451252|gb|EAT02147.1| probable tRNA modification GTPase (TrmE) [delta proteobacterium
           MLMS-1]
          Length = 122

 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
           IS+ TG+GLEEL   I + L+    + P    +P+ +      +  V      +  +   
Sbjct: 23  ISARTGQGLEELTEAIFTALTGGRHRDPEHACVPNARHEAALQAALVAARRTTTTLQSGG 82

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++A  L+ A  +LG+I G    E+LLD IFS+FCIGK
Sbjct: 83  APELLAVELQGALAALGEIVGETSGEELLDAIFSRFCIGK 122


>gi|308235717|ref|ZP_07666454.1| bifunctional cytidylate kinase/GTP-binding protein [Gardnerella
           vaginalis ATCC 14018]
 gi|311114732|ref|YP_003985953.1| ribosome-associated GTPase EngA [Gardnerella vaginalis ATCC 14019]
 gi|310946226|gb|ADP38930.1| ribosome-associated GTPase EngA [Gardnerella vaginalis ATCC 14019]
          Length = 734

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I ++G  N GKS+L N +    VA+V D PG TRD ++ D +  G   K+ DT G
Sbjct: 300 IAVIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFKLVDTGG 354



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA ++ ++V D+ GTTRD +   + +D E +L    DTAGI+
Sbjct: 474 RVALVGRPNVGKSSLLNHLAHEERSVVNDLAGTTRDPVDEVVRVDGEDWL--FIDTAGIK 531

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305
                +   E     RT   +E ++L L+L
Sbjct: 532 RRQHKLTGAEYYSSLRTQAAIERSELALIL 561


>gi|110640536|ref|YP_668264.1| hypothetical protein ECP_0331 [Escherichia coli 536]
 gi|191171299|ref|ZP_03032849.1| putative GTPase [Escherichia coli F11]
 gi|28316254|emb|CAD66199.1| hypothetical protein [Escherichia coli]
 gi|110342128|gb|ABG68365.1| hypothetical protein ECP_0331 [Escherichia coli 536]
 gi|190908599|gb|EDV68188.1| putative GTPase [Escherichia coli F11]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|300816620|ref|ZP_07096841.1| small GTP-binding protein [Escherichia coli MS 107-1]
 gi|300530850|gb|EFK51912.1| small GTP-binding protein [Escherichia coli MS 107-1]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--SELDLVLWL 121


>gi|306814136|ref|ZP_07448304.1| hypothetical protein ECNC101_18876 [Escherichia coli NC101]
 gi|305852501|gb|EFM52951.1| hypothetical protein ECNC101_18876 [Escherichia coli NC101]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHNMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|257867660|ref|ZP_05647313.1| GTP-binding protein engA [Enterococcus casseliflavus EC30]
 gi|257801743|gb|EEV30646.1| GTP-binding protein engA [Enterococcus casseliflavus EC30]
          Length = 234

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +   +  + ++ AD+I+ +
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIVFI 89



 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGI 277
           K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      E G    + DTAG+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSESGQEFTMIDTAGM 233


>gi|237704001|ref|ZP_04534482.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|226901913|gb|EEH88172.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|281181410|dbj|BAI57740.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|323955418|gb|EGB51186.1| hypothetical protein ERLG_03326 [Escherichia coli H263]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|134101736|ref|YP_001107397.1| GTP-binding protein EngA [Saccharopolyspora erythraea NRRL 2338]
 gi|291003092|ref|ZP_06561065.1| GTP-binding protein EngA [Saccharopolyspora erythraea NRRL 2338]
 gi|133914359|emb|CAM04472.1| small GTP-binding protein domain [Saccharopolyspora erythraea NRRL
           2338]
          Length = 480

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 5/91 (5%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S ++L+ IL +  D+  H   GK G       ++ ++G  N GKSSL N L  +  A+V 
Sbjct: 189 SGDLLDKILAVFPDVP-HEEFGKTG----GPRRVALVGKPNVGKSSLLNRLTGELRAVVD 243

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           D+ GTT D +   ++L+G + +  DTAG+R+
Sbjct: 244 DVAGTTVDPVDSLVELDGEVWRFVDTAGLRK 274



 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N L  +  A+V D PG TRD +  D    G    + DT G
Sbjct: 43  LAVVGRPNVGKSTLVNRLLGRREAVVQDTPGVTRDRVAYDALWNGRRFTVVDTGG 97


>gi|291535879|emb|CBL08991.1| iron-only hydrogenase maturation protein HydF [Roseburia
           intestinalis M50/1]
          Length = 453

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 4/90 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I + G +N+GKSS  NA   ++V+IV D+ GTT D +   +++   G  V I DTA
Sbjct: 38  NRLHIGVFGKTNSGKSSFINAFTHQEVSIVADVAGTTTDPVYKPMEISPLGPCV-IIDTA 96

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           G  +  ++ E+  +++T L  E AD+ +++
Sbjct: 97  GFDDETELGERR-VEKTKLAAEKADIAVIV 125


>gi|257464226|ref|ZP_05628605.1| GTP-binding protein Era [Fusobacterium sp. D12]
 gi|317061746|ref|ZP_07926231.1| GTP-binding protein era [Fusobacterium sp. D12]
 gi|313687422|gb|EFS24257.1| GTP-binding protein era [Fusobacterium sp. D12]
          Length = 296

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+++G      DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLMNKLVAEKVAIVSDKAGTTRDNIKGILNVQGKQYIFIDTPGIHKPK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            ++ +          ++AD IL L  ++  +EIS
Sbjct: 66  HLLGEYMTDIAIRSFKDADAILFL--LDGTQEIS 97


>gi|197117132|ref|YP_002137559.1| GTP-binding protein EngA [Geobacter bemidjiensis Bem]
 gi|238690874|sp|B5EE25|DER_GEOBB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|197086492|gb|ACH37763.1| GTPase EngA [Geobacter bemidjiensis Bem]
          Length = 440

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L  +  A+V D+PG TRD    +++       + DT G   ET
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYAEVNRFDVPFILVDTGGFEPET 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D + ++  +++   ++ ADLIL +
Sbjct: 65  SDRLLQQMREQSRFAMDEADLILFI 89



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I ++G  N GKS+L N L   +  +     GTTRD +     +      + DTAGIR  
Sbjct: 177 RIAVVGRPNVGKSTLVNRLLGYERVVANPTAGTTRDAVDTRFTVNKKPYLLIDTAGIRRK 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +T   VEK  +      +E AD++L++
Sbjct: 237 GKTVQKVEKYSVMDALRSIERADVVLIV 264


>gi|15644215|ref|NP_229266.1| ribosome biogenesis GTP-binding protein YsxC [Thermotoga maritima
           MSB8]
 gi|13124246|sp|Q9X1H7|ENGB_THEMA RecName: Full=Probable GTP-binding protein EngB
 gi|4982031|gb|AAD36534.1|AE001797_14 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 195

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 26/167 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRE 279
           +  +G SN GKSSL NAL  + +A V+  PG TR +    ++ + Y V +     A + +
Sbjct: 26  VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSK 85

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSD- 330
            + ++ K  ++  F    +  ++ LL +     +      + + K  NI F  + TK D 
Sbjct: 86  KERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDK 145

Query: 331 ---------------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                          ++S Y E      SS TGEG+ EL++ I ++L
Sbjct: 146 VKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLL 192


>gi|323971898|gb|EGB67122.1| hypothetical protein ERHG_02102 [Escherichia coli TA007]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVYAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|332344899|gb|AEE58233.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + ++  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEITPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRNIL--PELDLVLWL 121


>gi|309702300|emb|CBJ01620.1| putative ATP/GTP-binding protein [Escherichia coli ETEC H10407]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|298528797|ref|ZP_07016201.1| ribosome-associated GTPase EngA [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298512449|gb|EFI36351.1| ribosome-associated GTPase EngA [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 442

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           +VI+G  N GKS+LFN L +++ A+V D PG TRD L   +        + DT G + E 
Sbjct: 12  VVIVGRPNVGKSTLFNRLLRQNKAMVHDRPGVTRDSLYGRVQGRTRDYTLVDTGGLVLEQ 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
              +E+E  ++    + +ADLIL +
Sbjct: 72  GAQLEEEIYEQVREAMHSADLILFM 96



 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           ++ +LG  N GKSSL N L  ++  +V+   GTTRD + + L+         DTAG+R  
Sbjct: 184 RLSLLGRPNVGKSSLVNTLLGQERVLVSSRAGTTRDCVDVILEKGDKRYVFIDTAGVRRK 243

Query: 280 ---TDDIVEKEGIKRTFLEVENADLILLL 305
              +DD+ E+    R     + +D+ LL+
Sbjct: 244 TTISDDL-ERFSALRAIRSCQRSDVALLV 271


>gi|323945945|gb|EGB41985.1| hypothetical protein EREG_02489 [Escherichia coli H120]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 4/114 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSK 311
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L + + +
Sbjct: 76  RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWLIKADDR 127


>gi|293416385|ref|ZP_06659024.1| hypothetical protein ECDG_03140 [Escherichia coli B185]
 gi|291431741|gb|EFF04724.1| hypothetical protein ECDG_03140 [Escherichia coli B185]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|323136434|ref|ZP_08071516.1| GTP-binding proten HflX [Methylocystis sp. ATCC 49242]
 gi|322398508|gb|EFY01028.1| GTP-binding proten HflX [Methylocystis sp. ATCC 49242]
          Length = 444

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 30/171 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN L K +V +  D+   T D     + L  G  V +SDT G    
Sbjct: 215 VALVGYTNAGKSTLFNRLTKAEV-LAQDMLFATLDPTLRQIRLPHGARVLLSDTVGFISD 273

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
              +     + T  EV  AD+IL +++++ +   +  ++++ I   +G K +      E 
Sbjct: 274 LPTMLVSAFRATLEEVTLADVILHVRDVSHEDSEAQARDVETILDELGLKGEAEGRILEV 333

Query: 339 YDH--------------------------LISSFTGEGLEELINKIKSILS 363
           ++                           L S+ TG+GL+EL+ +I++IL+
Sbjct: 334 WNKIDALDPERQEALRQTARGFDPQRRPVLASALTGQGLDELLARIETILA 384


>gi|237734921|ref|ZP_04565402.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382249|gb|EEO32340.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 395

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 25/171 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  N+GKS+L NA   ++V+IV+  PGTT D +   ++++G     + DTAG
Sbjct: 11  NRLHIGFFGKRNSGKSALINAFVNQEVSIVSSEPGTTTDPVYKAMEIDGLGPCLLVDTAG 70

Query: 277 IRETDDI-----VEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIG 326
               DDI     +  +  K+   +++ A  I+L  +    +E+ +      K+I  I + 
Sbjct: 71  F---DDIGTLGQLRNDKTKKASEKIDIA--IILFNDRKICQELDWYHYFKEKHIPTILVI 125

Query: 327 TKSDL---------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           +K+DL          +  T E   LISS T +G++EL  K+   +   F+K
Sbjct: 126 SKADLQRNDNLLKKVTEATSETPLLISSLTKQGIKELQEKLLEKVPADFEK 176


>gi|253699395|ref|YP_003020584.1| GTP-binding protein EngA [Geobacter sp. M21]
 gi|259645878|sp|C6E0Y6|DER_GEOSM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|251774245|gb|ACT16826.1| small GTP-binding protein [Geobacter sp. M21]
          Length = 440

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L  +  A+V D+PG TRD    +++       + DT G   ET
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYAEVNRFDVPFILVDTGGFEPET 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            D + ++  +++   ++ ADLIL +
Sbjct: 65  SDRLLQQMREQSRFAMDEADLILFV 89



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I ++G  N GKS+L N L   +  +     GTTRD +     +      + DTAGIR  
Sbjct: 177 RIAVVGRPNVGKSTLVNRLLGYERVVANPTAGTTRDAVDTRFTVNKKPYLLIDTAGIRRK 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +T   VEK  +      +E AD++L++
Sbjct: 237 GKTVQKVEKYSVMDALRSIERADVVLIV 264


>gi|167756284|ref|ZP_02428411.1| hypothetical protein CLORAM_01817 [Clostridium ramosum DSM 1402]
 gi|167703692|gb|EDS18271.1| hypothetical protein CLORAM_01817 [Clostridium ramosum DSM 1402]
          Length = 395

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 25/171 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  N+GKS+L NA   ++V+IV+  PGTT D +   ++++G     + DTAG
Sbjct: 11  NRLHIGFFGKRNSGKSALINAFVNQEVSIVSSEPGTTTDPVYKAMEIDGLGPCLLVDTAG 70

Query: 277 IRETDDI-----VEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIG 326
               DDI     +  +  K+   +++ A  I+L  +    +E+ +      K+I  I + 
Sbjct: 71  F---DDIGTLGQLRNDKTKKASEKIDIA--IILFNDRKICQELDWYHYFKEKHIPTILVI 125

Query: 327 TKSDLY---------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           +K+DL          +  T E   LISS T +G++EL  K+   +   F+K
Sbjct: 126 SKADLQRNDNLLKKITEATSETPLLISSLTKQGIKELQEKLLEKVPADFEK 176


>gi|194436751|ref|ZP_03068851.1| putative GTPase [Escherichia coli 101-1]
 gi|194424233|gb|EDX40220.1| putative GTPase [Escherichia coli 101-1]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|169350534|ref|ZP_02867472.1| hypothetical protein CLOSPI_01302 [Clostridium spiroforme DSM 1552]
 gi|169292854|gb|EDS74987.1| hypothetical protein CLOSPI_01302 [Clostridium spiroforme DSM 1552]
          Length = 396

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  N+GKSSL NA   ++V+IV+++ GTT D +   ++++G     + DTAG
Sbjct: 11  NRIHIGFFGKRNSGKSSLINAFVNQEVSIVSNVAGTTTDPVYKAMEIQGIGPCVLIDTAG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSDL 331
             +  D+      ++T    E  DL +++   +  +E+++      K+I  I +  K DL
Sbjct: 71  FDDVGDLGNLRN-RKTKKTSEKIDLAIIIFSDDISEELAWYQYFKNKHITIIPVINKIDL 129

Query: 332 YSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKK 368
                   +          L+S+ T +G+ EL NKI   + N ++K
Sbjct: 130 EIEEEIINNVEKNIQCKPILVSTKTKQGITELKNKIIQNIPNDYEK 175


>gi|57864890|gb|AAW57064.1| iron(II)transporter [cyanobacterium endosymbiont of Rhopalodia
           gibba]
          Length = 210

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS LFN L       V++ PGTT D+      + G  V I DT G+    
Sbjct: 44  IALVGSPNVGKSLLFNLLTG-SYTTVSNYPGTTVDISKGQAIISGQTVSIIDTPGMYSLI 102

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            + E+E   R FL  E+ DL++
Sbjct: 103 PMTEEEQCSRDFLLTESIDLVI 124


>gi|258542822|ref|YP_003188255.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-01]
 gi|256633900|dbj|BAH99875.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-01]
 gi|256636959|dbj|BAI02928.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-03]
 gi|256640012|dbj|BAI05974.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-07]
 gi|256643068|dbj|BAI09023.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-22]
 gi|256646123|dbj|BAI12071.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-26]
 gi|256649176|dbj|BAI15117.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-32]
 gi|256652163|dbj|BAI18097.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655220|dbj|BAI21147.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-12]
          Length = 448

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 29/179 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFNAL    V     +  T    +  IDL   G  V +SDT G    
Sbjct: 221 VALVGYTNAGKSTLFNALTGATVYAQDQLFATLDPTMRAIDLP-SGRRVILSDTVGF--I 277

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD--LYSTYT 336
            D+  +     + T  EV  AD+IL ++++      S  K++  +  G   D  L   + 
Sbjct: 278 SDLPTELIAAFRATLEEVAEADIILHVRDVAHPDSASQKKDVLGVLEGMAKDDMLEQDWP 337

Query: 337 E-------EYDHL--------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           E       + D L              IS+ TGEGLE L+ +I + ++   + + + +P
Sbjct: 338 ERIIEVLNKVDLLGGPEAIPQTEDTIAISAITGEGLETLLARIDARITQGMETVRYCLP 396


>gi|108799893|ref|YP_640090.1| GTP-binding protein EngA [Mycobacterium sp. MCS]
 gi|119869003|ref|YP_938955.1| GTP-binding protein EngA [Mycobacterium sp. KMS]
 gi|126435521|ref|YP_001071212.1| GTP-binding protein EngA [Mycobacterium sp. JLS]
 gi|108770312|gb|ABG09034.1| Small GTP-binding protein domain protein [Mycobacterium sp. MCS]
 gi|119695092|gb|ABL92165.1| small GTP-binding protein [Mycobacterium sp. KMS]
 gi|126235321|gb|ABN98721.1| small GTP-binding protein [Mycobacterium sp. JLS]
          Length = 471

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD ++ D    G    + DT G     
Sbjct: 37  VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDATWSGRRFVVQDTGGWEPDA 96

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++    +  + +  AD I+L+
Sbjct: 97  KGLQQLVADQATVAMRTADAIILV 120



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA  + ++V D+ GTT D +   ++L G   +  DTAG+R  
Sbjct: 209 RVALVGKPNVGKSSLLNRLAGDERSVVHDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRK 268

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305
             + +  G +     RT   ++ A+++L+L
Sbjct: 269 --VGQASGHEFYASVRTHGAIDAAEVVLVL 296


>gi|323138582|ref|ZP_08073650.1| ribosome-associated GTPase EngA [Methylocystis sp. ATCC 49242]
 gi|322396216|gb|EFX98749.1| ribosome-associated GTPase EngA [Methylocystis sp. ATCC 49242]
          Length = 466

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 34/60 (56%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L      I DTAG+ E
Sbjct: 3   FSLAIIGRPNVGKSTLFNRLTGKKLALVDDRPGVTRDRREGEARLADLRFTIIDTAGLEE 62



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  NAGKS+L N +  +D  +     G TRD + +D       +K+ DTAG+R+ 
Sbjct: 198 RIAVVGRPNAGKSTLINRILGEDRLLTGPEAGITRDSIGVDFVWRDRKMKLFDTAGLRKR 257

Query: 281 DDIVEK 286
             +V+K
Sbjct: 258 AKVVDK 263


>gi|315652502|ref|ZP_07905486.1| GTP-binding protein Era [Eubacterium saburreum DSM 3986]
 gi|315485218|gb|EFU75616.1| GTP-binding protein Era [Eubacterium saburreum DSM 3986]
          Length = 304

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 3/97 (3%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVK 270
           +GE +++G+ + ++G  N GKS+L N L  + +AI +  P TTR+ + T+  D  G +V 
Sbjct: 2   IGEYMKSGF-VALIGRPNVGKSTLMNTLIGQKIAITSSKPQTTRNRIQTVFTDERGQIVF 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           + DT GI +  + + +  +K +   + + DL+L L E
Sbjct: 61  L-DTPGIHKAKNKLGEYMVKVSTRTLRDVDLVLWLVE 96


>gi|147677230|ref|YP_001211445.1| GTPase [Pelotomaculum thermopropionicum SI]
 gi|146273327|dbj|BAF59076.1| GTPase [Pelotomaculum thermopropionicum SI]
          Length = 300

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 24/194 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G +N GKS+L N+L  + VAI+++ P TTR+ +   L  E   V   DT G
Sbjct: 7   RSGF-VAIIGRTNVGKSTLLNSLLGRKVAIMSEKPQTTRNKILCVLTREDAQVVFLDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
             +    + +  ++     ++  DL+L L E             K+ +  K    + I  
Sbjct: 66  FHKPKHKLGEHLVQVALRTLKEVDLVLFLVEAGQPPGPGDHYVIKQFAGLKTPVLLVI-N 124

Query: 328 KSDLYS-----TYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL          E+Y  L        +S+ TGE L  L+  +   L    K  P  + 
Sbjct: 125 KIDLVRREELLPLIEQYSGLFGFAEIVPVSALTGENLPRLLEVVVRYLPAGPKYYPEDVI 184

Query: 375 SHKRHLYHLSQTVR 388
           + +   + +++ +R
Sbjct: 185 TDRPESFIMAELIR 198


>gi|148270457|ref|YP_001244917.1| ribosome biogenesis GTP-binding protein YsxC [Thermotoga petrophila
           RKU-1]
 gi|166232160|sp|A5IMB8|ENGB_THEP1 RecName: Full=Probable GTP-binding protein EngB
 gi|147736001|gb|ABQ47341.1| small GTP-binding protein [Thermotoga petrophila RKU-1]
          Length = 195

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 26/167 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRE 279
           +  +G SN GKSSL NAL  K +A V+  PG TR +    ++ + Y V +     A + +
Sbjct: 26  VAFVGRSNVGKSSLLNALFNKKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSK 85

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDL 331
            + ++ K  ++  F    +  ++ LL +     +      I + K  NI F  + TK D 
Sbjct: 86  KERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDFMMIEWMKSLNIPFTIVLTKMDK 145

Query: 332 ----------------YSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                           +S Y E      SS TGEG+ EL++ I ++L
Sbjct: 146 VKMSERAKKLEEHQKEFSRYGEYTIIPTSSVTGEGISELLDLISTLL 192


>gi|331650194|ref|ZP_08351267.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331041139|gb|EGI13296.1| conserved hypothetical protein [Escherichia coli M605]
          Length = 303

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G S AGKSSL NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ D 
Sbjct: 54  IMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESRDR 113

Query: 284 -VEKEGIKRTFLEVENADLILLL 305
             E E + R  L     DL+L L
Sbjct: 114 DAEYEALYRDIL--PELDLVLWL 134


>gi|194426656|ref|ZP_03059210.1| putative GTPase [Escherichia coli B171]
 gi|194415395|gb|EDX31663.1| putative GTPase [Escherichia coli B171]
 gi|195183288|dbj|BAG66827.1| putative small GTP-binding protein [Escherichia coli O111:H-]
 gi|195183354|dbj|BAG66891.1| putative small GTP-binding protein [Escherichia coli O111:H-]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|320094216|ref|ZP_08026020.1| GTP-binding protein Era [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319978841|gb|EFW10380.1| GTP-binding protein Era [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 396

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D  +E D  +  + E L  +  L+ D ++ I      E  R G+ + I+G  N GKS+L 
Sbjct: 61  DLEDEADA-DLGAFEALASVASLRQDAAAAIGVPDYPEDFRAGF-VSIVGRPNVGKSTLT 118

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           NAL  + VAI +  P TTR  +   +  +GY + + DT G
Sbjct: 119 NALVGQKVAITSGRPETTRHNIRGIVHGDGYQLVLVDTPG 158


>gi|283458469|ref|YP_003363095.1| GTPase [Rothia mucilaginosa DY-18]
 gi|283134510|dbj|BAI65275.1| GTPase [Rothia mucilaginosa DY-18]
          Length = 571

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 80/179 (44%), Gaps = 28/179 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L    V    A+   +  T R   T D    G    +SDT G 
Sbjct: 319 VAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVRKAQTPD----GIGYTLSDTVGF 374

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISF---PKNIDFIFI 325
             +      E  + T  EV +AD+IL +          +I + +E+      ++I  I +
Sbjct: 375 VRSLPTQLVEAFRSTLEEVADADVILHVVDASHPDPEGQIRAVREVIAEVDARHIPEIIV 434

Query: 326 GTKSD------LYSTYTEEYDHLI-SSFTGEGLEELINKIKSILSNKFKKLPFSIP-SH 376
             K+D      L      E +H+I S+ TGEG+EEL  KI   +     ++   IP SH
Sbjct: 435 LNKADAADPFVLERMRQREPEHVIVSARTGEGIEELKQKIADTIPRPSIEVKLLIPYSH 493


>gi|296140071|ref|YP_003647314.1| ribosome-associated GTPase EngA [Tsukamurella paurometabola DSM
           20162]
 gi|296028205|gb|ADG78975.1| ribosome-associated GTPase EngA [Tsukamurella paurometabola DSM
           20162]
          Length = 482

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKS+L N +  +  A+V DIPG TRD ++ + D  G    + DT G
Sbjct: 50  VAIVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRISYEADWAGRRFLVQDTGG 104



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%)

Query: 211 KLGEIIRNG------YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           KL E  R G       ++ ++G  N GKSSL N L  ++ ++V ++ GTT D +   ++L
Sbjct: 206 KLPETPREGTGGFGPRRVALVGKPNVGKSSLLNKLTGENRSVVDNVAGTTVDPVDSLVEL 265

Query: 265 EGYLVKISDTAGIRE 279
            G   K  DTAG+R+
Sbjct: 266 GGKTWKFIDTAGLRK 280


>gi|170766018|ref|ZP_02900829.1| putative GTPase [Escherichia albertii TW07627]
 gi|170125164|gb|EDS94095.1| putative GTPase [Escherichia albertii TW07627]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G S AGKSSL NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ 
Sbjct: 39  IGIMGKSGAGKSSLCNALFQGEVTPVSDVYAGTREVQRFRLSGHGHSMVITDLPGVGESR 98

Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305
           D   E E + R  L     DL+L L
Sbjct: 99  DRDAEYEALYRDIL--PELDLVLWL 121


>gi|117624200|ref|YP_853113.1| hypothetical protein APECO1_1093 [Escherichia coli APEC O1]
 gi|115513324|gb|ABJ01399.1| conserved hypothetical protein [Escherichia coli APEC O1]
          Length = 303

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G S AGKSSL NAL + ++  V+D+   TR+V    L+  G+ + I+D  G+ E+ D 
Sbjct: 54  IMGKSGAGKSSLCNALFQGEITPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRDR 113

Query: 284 -VEKEGIKRTFLEVENADLILLL 305
             E E + R  L     DL+L L
Sbjct: 114 DAEYEALYRDIL--PELDLVLWL 134


>gi|162606364|ref|XP_001713212.1| hypothetical protein GTHECHR2139 [Guillardia theta]
 gi|12580678|emb|CAC26996.1| hypothetical protein [Guillardia theta]
          Length = 496

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 9/97 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG----YLVKISDTAG 276
           K+ I+G  N GKS+  N L  +  +IV+D PGTT D  ++D  + G     +    DTAG
Sbjct: 236 KVSIIGKPNVGKSTFVNKLLGQYRSIVSDTPGTTSD--SVDSYISGGKNCNVYNFIDTAG 293

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINS 310
           I+    I   +E   + RT   V+ ++ +L + +IN+
Sbjct: 294 IKRKKSIEFGIEYFMVNRTLKSVQKSECVLFMIDINN 330



 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 222 IVILGHSNAGKSSLFNALAK--KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           I ++G SN GKS+L N + K  KD +IV D  G T+D++      + Y   ++DT G   
Sbjct: 60  ITVVGRSNVGKSTLINRITKSNKDGSIVHDSEGVTKDIIQRKAFWKNYEFLMTDTGGFSI 119

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLL 305
                + + K   K+ F  +E + LI+ +
Sbjct: 120 NYNKKNEIYKNMTKQIFSSIEKSSLIIFV 148


>gi|257459461|ref|ZP_05624570.1| GTP-binding protein Era [Campylobacter gracilis RM3268]
 gi|257442886|gb|EEV18020.1| GTP-binding protein Era [Campylobacter gracilis RM3268]
          Length = 309

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 8/141 (5%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT-DIPGTT 254
           +L+    ++S I   K  E +++G+ + ++G +NAGKSSL N L  + +++V+  I  T 
Sbjct: 1   MLWFNAPVASRIKFYKFKENMKSGF-VTLIGRTNAGKSSLLNYLCGEKISLVSHKINATR 59

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---- 310
           R +  I ++    ++  +DT G+ E+  ++ K  ++     +E  DL+L L  ++     
Sbjct: 60  RKINGIAMNGTDQVI-FTDTPGLHESAKLMNKLMVEVALGAIEGCDLVLFLAPVHDDTAE 118

Query: 311 -KKEISFPKNIDFIFIGTKSD 330
            +K ++    I  I I TK D
Sbjct: 119 YEKFLNLNAGIKHIVILTKID 139


>gi|297544408|ref|YP_003676710.1| GTP-binding protein Era [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842183|gb|ADH60699.1| GTP-binding protein Era [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 302

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 9/98 (9%)

Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           GYK   + ++G +N GKS+L NA+ ++ +AI +  P TTR+ +   L  + Y V   DT 
Sbjct: 2   GYKAGFVALIGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTP 61

Query: 276 GIRETDDIVEK---EGIKRTFLEVENADLILLLKEINS 310
           GI +    + +   E  KRT  EV   DLIL + E ++
Sbjct: 62  GIHKPKSKLSEFMIEVAKRTLKEV---DLILYMIEPDT 96


>gi|254450380|ref|ZP_05063817.1| GTP-binding protein [Octadecabacter antarcticus 238]
 gi|198264786|gb|EDY89056.1| GTP-binding protein [Octadecabacter antarcticus 238]
          Length = 489

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDI 283
           +G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ E TD+ 
Sbjct: 1   MGRPNVGKSTLFNRLVCKKLALVDDQPGVTRDLREGAARLGDLRFTVIDTAGLEEATDES 60

Query: 284 VEKEGIKRTFLEVENADLILLL 305
           ++      T   VE AD+ L +
Sbjct: 61  LQGRMRALTERAVEMADVCLFM 82



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYL--VKISDTAG 276
           +I ++G  NAGKS+L N +  +D  +     G TRD +++ +D   EG    V+I DTAG
Sbjct: 193 QIAVVGRPNAGKSTLINQILGEDRLLTGPEAGITRDAISVQMDWGPEGATVPVRIFDTAG 252

Query: 277 IRETDDIVEK 286
           IR+   + EK
Sbjct: 253 IRKRAKVQEK 262


>gi|308380152|ref|ZP_07669128.1| putative small GTP-binding protein domain protein [Mycobacterium
           tuberculosis SUMu011]
 gi|308362467|gb|EFP51318.1| putative small GTP-binding protein domain protein [Mycobacterium
           tuberculosis SUMu011]
          Length = 208

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD +  D    G    + DT G     
Sbjct: 22  VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 81

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++   ++  + +  AD ++L+
Sbjct: 82  KGLQRLVAEQASVAMRTADAVILV 105


>gi|157154877|ref|YP_001465819.1| putative GTPase [Escherichia coli E24377A]
 gi|157076907|gb|ABV16615.1| putative GTPase [Escherichia coli E24377A]
          Length = 290

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|308049760|ref|YP_003913326.1| iron-only hydrogenase maturation protein HydF [Ferrimonas balearica
           DSM 9799]
 gi|307631950|gb|ADN76252.1| iron-only hydrogenase maturation protein HydF [Ferrimonas balearica
           DSM 9799]
          Length = 407

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 24/171 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
           Y I ++G  NAGKSSL N L  + V+IV+D  GTT D +    +L     V   DTAGI 
Sbjct: 15  YHIALVGRRNAGKSSLLNLLTGQAVSIVSDTAGTTTDAVNKPFELLPLGPVTFIDTAGID 74

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN----------IDFIFIGTK 328
           +  ++ E   +  T   +  AD+ L + +   ++ I+ P            +  + +  K
Sbjct: 75  DEGELGELR-VAATHKALNRADMALYVVD---EQGITAPDRAFIEQQLALGLPMLLVFNK 130

Query: 329 SDLYS------TYTEEYD---HLISSFTGEGLEELINKIKSILSNKFKKLP 370
           +DL S       + + +     L SS  G+G   +   +  +   + K  P
Sbjct: 131 TDLQSPSEADLAWCQSHQLPVELASSVAGQGRTMICQTLYQLAPEELKAKP 181


>gi|325678850|ref|ZP_08158448.1| hydrogenase maturation GTPase HydF [Ruminococcus albus 8]
 gi|324109354|gb|EGC03572.1| hydrogenase maturation GTPase HydF [Ruminococcus albus 8]
          Length = 396

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 14/134 (10%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKI 271
           GE +  G+     G  NAGKSS+ NA   +++AIV+D PGTT D +   ++L     V I
Sbjct: 9   GERVHIGF----FGRRNAGKSSVVNAFTNQELAIVSDTPGTTTDPVYKAMELLPMGPVMI 64

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFI 323
            DT G  +  ++ E   +K+T   +   D  +L+ +      +S+K+++     K I +I
Sbjct: 65  IDTPGYDDEGELGELR-VKKTVQVLGKTDCAVLVTDCTRELDDSEKQLTELFVQKKIPYI 123

Query: 324 FIGTKSDLYSTYTE 337
               KSDL  +  +
Sbjct: 124 IAKNKSDLLESVPQ 137


>gi|255326352|ref|ZP_05367436.1| small GTP-binding protein [Rothia mucilaginosa ATCC 25296]
 gi|255296569|gb|EET75902.1| small GTP-binding protein [Rothia mucilaginosa ATCC 25296]
          Length = 570

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 80/179 (44%), Gaps = 28/179 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L    V    A+   +  T R   T D    G    +SDT G 
Sbjct: 318 VAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVRKAQTPD----GIGYTLSDTVGF 373

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISF---PKNIDFIFI 325
             +      E  + T  EV +AD+IL +          +I + +E+      ++I  I +
Sbjct: 374 VRSLPTQLVEAFRSTLEEVADADVILHVVDASHPDPEGQIRAVREVIAEVDARHIPEIIV 433

Query: 326 GTKSD------LYSTYTEEYDHLI-SSFTGEGLEELINKIKSILSNKFKKLPFSIP-SH 376
             K+D      L      E +H+I S+ TGEG+EEL  KI   +     ++   IP SH
Sbjct: 434 LNKADAADPFVLERMRQREPEHVIVSARTGEGIEELKQKIADTIPRPSIEVKLLIPYSH 492


>gi|261224229|ref|ZP_05938510.1| hypothetical protein EscherichiacoliO157_06435 [Escherichia coli
           O157:H7 str. FRIK2000]
          Length = 204

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL +  V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGVVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAESEALYRDIL--PELDLVLWL 121


>gi|222100001|ref|YP_002534569.1| GTP-binding protein engB [Thermotoga neapolitana DSM 4359]
 gi|254783217|sp|B9K8C0|ENGB_THENN RecName: Full=Probable GTP-binding protein EngB
 gi|221572392|gb|ACM23204.1| GTP-binding protein engB [Thermotoga neapolitana DSM 4359]
          Length = 195

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 46/177 (25%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-------LTIDLDLEGY-LVKISD 273
           +  +G SN GKSSL NAL  + +A V+  PG TR +           +DL GY   K+S 
Sbjct: 26  VAFVGRSNVGKSSLLNALFNRKIAYVSKTPGKTRSINFYLVNSRYYFVDLPGYGYAKVSK 85

Query: 274 TAGIRET----DDIVEKEGIKRTFLEV------ENADLILL--LKEINSKKEISFPKNID 321
              ++      D    +  ++  FL V      +  DL+++  LK +          N+ 
Sbjct: 86  KERVQWKKLVEDYFTNRWSLQMVFLLVDGRIPPQETDLMMVEWLKSL----------NVP 135

Query: 322 FIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           F  + TK D                 +S Y E      SS TGEG+++L+N I ++L
Sbjct: 136 FTIVLTKMDKVKMSERKKKLDEHKKAFSKYGEYTIIPTSSVTGEGIDDLLNLISTLL 192


>gi|73667142|ref|YP_303158.1| GTP-binding protein EngA [Ehrlichia canis str. Jake]
 gi|72394283|gb|AAZ68560.1| Small GTP-binding protein domain:GTP-binding domain [Ehrlichia
           canis str. Jake]
          Length = 439

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 35/60 (58%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS++FN L  +  AIV++ P  TRD    + DL G   K+ DT G+  T
Sbjct: 3   KIAIVGLPNVGKSTIFNRLTNQKSAIVSNTPNLTRDRREGNADLCGLKFKVIDTGGVDNT 62



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+  N+L  +   IV+   GTTRD + I+   +  +  + DTAG+R+ 
Sbjct: 175 RLSIVGRPNAGKSTFVNSLLGESRMIVSPEAGTTRDSIDIEYQYKDQMFTLIDTAGMRKK 234

Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305
             ++E+     + +T   +  +D+++L+
Sbjct: 235 AKVIEEIEVSSVHKTIGSINRSDIVVLV 262


>gi|23011471|ref|ZP_00051819.1| COG1160: Predicted GTPases [Magnetospirillum magnetotacticum MS-1]
          Length = 481

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 8/114 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L   +++  ++ + GE+   G  ++ ++G  N GKSSL N LA  D  +V +I GTTRD
Sbjct: 228 LLDAAMAALPTESEHGEVRPTGPRRVALVGRPNVGKSSLLNKLAGADRVVVDEIAGTTRD 287

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLL 305
            +   + ++     + DTAGIR    + + +G       RT   +E A+L ++L
Sbjct: 288 PVDELVTIKDVPYVLVDTAGIRRR--VHQTKGADFYASLRTQAAIEKAELAVVL 339



 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   D  G    + DT G
Sbjct: 79  LAVVGRPNVGKSTLVNRILGRREAVVEDKPGVTRDRVSYPADWSGRRFTLVDTGG 133


>gi|163760113|ref|ZP_02167196.1| GTP-binding protein [Hoeflea phototrophica DFL-43]
 gi|162282512|gb|EDQ32800.1| GTP-binding protein [Hoeflea phototrophica DFL-43]
          Length = 413

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 27/171 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +   +V +  D+   T D     + L  G  V +SDT G   +
Sbjct: 175 VALVGYTNAGKSTLFNRVTGAEV-LAEDMLFATLDPTLRRMKLPHGNTVILSDTVGFISS 233

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---------------I 325
                    + T  EV  ADLIL ++++      S   +++ I                +
Sbjct: 234 LPTHLVAAFRATLEEVVEADLILHVRDMADPDRASQAGDVEEILKSLGLNEGDGRKLVEV 293

Query: 326 GTKSDLYS--------TYTEEYDHLI--SSFTGEGLEELINKIKSILSNKF 366
             K DL S        T  E+ ++ I  SS TGEG++EL+ +I++I+S K 
Sbjct: 294 WNKIDLLSEEAAEDLKTRAEKSENAIAVSSVTGEGIDELLMRIETIISGKL 344


>gi|91210166|ref|YP_540152.1| hypothetical protein UTI89_C1138 [Escherichia coli UTI89]
 gi|91071740|gb|ABE06621.1| hypothetical protein UTI89_C1138 [Escherichia coli UTI89]
 gi|294493231|gb|ADE91987.1| putative GTPase [Escherichia coli IHE3034]
 gi|307627510|gb|ADN71814.1| hypothetical protein UM146_12225 [Escherichia coli UM146]
          Length = 290

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHNMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|88607492|ref|YP_504995.1| GTP-binding protein EngA [Anaplasma phagocytophilum HZ]
 gi|88598555|gb|ABD44025.1| putative GTP-binding protein EngA [Anaplasma phagocytophilum HZ]
          Length = 440

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 5/87 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+LFN L ++  AIV+DI   TRD     +D  G      DT G+ + 
Sbjct: 3   KVAIVGLPNVGKSTLFNRLTRRKSAIVSDIAHVTRDRKEALVDFCGLRFIAIDTGGVADG 62

Query: 281 DDIVEKEGIKRT--FLEVENADLILLL 305
            +I   + + +T   L +ENAD++L +
Sbjct: 63  GEI---QSLVKTQVQLALENADVVLFV 86



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+  N++  ++  I + I GTTRD ++ +   +G  + ++DTAGIR+  
Sbjct: 177 ISIIGQPNVGKSTFVNSILGEERVITSGIAGTTRDSISAEYSYKGITLLLTDTAGIRKRT 236

Query: 282 DIVE 285
            + E
Sbjct: 237 KVTE 240


>gi|289578133|ref|YP_003476760.1| GTP-binding protein Era [Thermoanaerobacter italicus Ab9]
 gi|289527846|gb|ADD02198.1| GTP-binding protein Era [Thermoanaerobacter italicus Ab9]
          Length = 302

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 9/98 (9%)

Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           GYK   + ++G +N GKS+L NA+ ++ +AI +  P TTR+ +   L  + Y V   DT 
Sbjct: 2   GYKAGFVALIGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTP 61

Query: 276 GIRETDDIVEK---EGIKRTFLEVENADLILLLKEINS 310
           GI +    + +   E  KRT  EV   DLIL + E ++
Sbjct: 62  GIHKPKSKLSEFMIEVAKRTLKEV---DLILYMIEPDT 96


>gi|240146464|ref|ZP_04745065.1| GTP-binding protein [Roseburia intestinalis L1-82]
 gi|257201399|gb|EEU99683.1| GTP-binding protein [Roseburia intestinalis L1-82]
          Length = 427

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 4/90 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I + G +N+GKSS  NA   ++V+IV D+ GTT D +   +++   G  V I DTA
Sbjct: 12  NRLHIGVFGKTNSGKSSFINAFTHQEVSIVADVAGTTTDPVYKPMEISPLGPCV-IIDTA 70

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           G  +  ++ E+  +++T L  E AD+ +++
Sbjct: 71  GFDDETELGERR-VEKTKLAAEKADIAVIV 99


>gi|322379042|ref|ZP_08053445.1| iron(II) transport protein [Helicobacter suis HS1]
 gi|321148534|gb|EFX43031.1| iron(II) transport protein [Helicobacter suis HS1]
          Length = 710

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NA++   +  V +  G T +   I +   GY + I D  GI   +
Sbjct: 6   VALVGQPNVGKSSLINAVSGAHLK-VGNFAGVTVEKTEISVVYGGYTINIIDLPGIYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E I + FL+ E+ DLIL
Sbjct: 65  DFTIEEKITKRFLDHESYDLIL 86


>gi|313837272|gb|EFS74986.1| GTP-binding protein Era [Propionibacterium acnes HL037PA2]
 gi|314928053|gb|EFS91884.1| GTP-binding protein Era [Propionibacterium acnes HL044PA1]
 gi|314972043|gb|EFT16141.1| GTP-binding protein Era [Propionibacterium acnes HL037PA3]
          Length = 341

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 39/257 (15%)

Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E 
Sbjct: 29  ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTGEK 88

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316
             + + DT G+ +   ++ +      F      D+I +    N +          +I+ F
Sbjct: 89  SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIADF 148

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLI-------------------SSFTGEGLEELINK 357
           P+    I + TKSDL S      +HL+                   S+ +GE ++E+ + 
Sbjct: 149 PRRPTLIALATKSDLVSK-ARMAEHLVAIGKLQEEVGIEFAEIIPCSAVSGEQVDEVRDA 207

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           I S+L       P    + +     +++ +R   +  + E+      +  +L +  V +G
Sbjct: 208 IVSLLPEGPAYYPDGEVTDEPTDTLVAELIREAALEGVREE------LPHSLAVEIVEMG 261

Query: 418 KITGCVDVEQLLDIIFS 434
              G  D   LLD+  S
Sbjct: 262 LREGQPDDHPLLDVYAS 278


>gi|301058126|ref|ZP_07199178.1| GTP-binding protein Era [delta proteobacterium NaphS2]
 gi|300447758|gb|EFK11471.1| GTP-binding protein Era [delta proteobacterium NaphS2]
          Length = 294

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 32/212 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +    +AIV+  P TTR+ +          +   DT GI  T 
Sbjct: 8   IGIVGPPNVGKSTLLNRIMGTKLAIVSPKPQTTRNRILGVFHQHDCQMVFMDTPGIHRTR 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS------------ 329
             + K  +   F      D+IL++ E + ++  + P     I  G KS            
Sbjct: 68  TALHKSMVDAAFAAFHEVDMILMMVEADPRENPAVPS----IIRGLKSIAKPRFLAINKI 123

Query: 330 ---------DLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                     L + Y  + D      IS+  G G++ L+ ++K  L    +  P  + + 
Sbjct: 124 DRVKKEHILPLLADYGRKLDFDAIIPISALKGNGVDTLLQELKRRLKPGPQFFPEDMDTD 183

Query: 377 KRHLYHLSQTVR---YLEMASLNEKDCGLDII 405
           +   + +++ +R   Y +++      C + +I
Sbjct: 184 QSEAFMVAEIIREKIYEQLSQELPYSCAVTVI 215


>gi|291538377|emb|CBL11488.1| iron-only hydrogenase maturation protein HydF [Roseburia
           intestinalis XB6B4]
          Length = 427

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 4/90 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I + G +N+GKSS  NA   ++V+IV D+ GTT D +   +++   G  V I DTA
Sbjct: 12  NRLHIGVFGKTNSGKSSFINAFTHQEVSIVADVAGTTTDPVYKPMEISPLGPCV-IIDTA 70

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           G  +  ++ E+  +++T L  E AD+ +++
Sbjct: 71  GFDDETELGERR-VEKTKLAAEKADIAVIV 99


>gi|227485371|ref|ZP_03915687.1| GTP-binding protein, GTPase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236662|gb|EEI86677.1| GTP-binding protein, GTPase [Anaerococcus lactolyticus ATCC 51172]
          Length = 385

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 14/148 (9%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           + IS+  L E +  G    I G +N+GKS+L N L  +D AIV+ I GTT D +   +++
Sbjct: 2   TSISKTSLSERVYIG----IFGKTNSGKSTLLNYLTGQDAAIVSPIEGTTTDPIRKAMEI 57

Query: 265 EGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-- 321
             +  V   DTAG  +   +  KE  ++T  E++  D+ L +       EI  PK  D  
Sbjct: 58  TDFGPVVFIDTAGTADETQL-GKERYEKTLAEIDKVDVFLYVLSSGDDLEI-IPKFKDKP 115

Query: 322 FIFIGTKSDLYSTYTEEYDHLISSFTGE 349
            I++  K D     T E   ++ +F G+
Sbjct: 116 VIYMAMKVD-----TGEGSQILKAFAGK 138


>gi|110643162|ref|YP_670892.1| hypothetical protein ECP_3008 [Escherichia coli 536]
 gi|191171808|ref|ZP_03033354.1| putative GTPase [Escherichia coli F11]
 gi|110344754|gb|ABG70991.1| hypothetical protein ECP_3008 [Escherichia coli 536]
 gi|190907843|gb|EDV67436.1| putative GTPase [Escherichia coli F11]
          Length = 290

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHNMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|46578469|ref|YP_009277.1| GTP-binding protein Era [Desulfovibrio vulgaris str. Hildenborough]
 gi|120603947|ref|YP_968347.1| GTP-binding protein Era [Desulfovibrio vulgaris DP4]
 gi|81567485|sp|Q72G11|ERA_DESVH RecName: Full=GTPase Era
 gi|189037267|sp|A1VHK4|ERA_DESVV RecName: Full=GTPase Era
 gi|46447880|gb|AAS94536.1| GTP-binding protein Era [Desulfovibrio vulgaris str. Hildenborough]
 gi|120564176|gb|ABM29920.1| GTP-binding protein Era [Desulfovibrio vulgaris DP4]
 gi|311232397|gb|ADP85251.1| GTP-binding protein Era [Desulfovibrio vulgaris RCH1]
          Length = 308

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L NAL  + VAIVT  P TTR+ +   L  +   V   DT G
Sbjct: 7   RCGW-VALIGPPNAGKSTLLNALIGQKVAIVTSKPQTTRNQIVGILSRKDAQVVFMDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +    + K  ++  +  +  AD ++++
Sbjct: 66  IHQLRGRLNKMLLQTAWQSMNAADALIVM 94


>gi|296273943|ref|YP_003656574.1| GTP-binding protein Era [Arcobacter nitrofigilis DSM 7299]
 gi|296098117|gb|ADG94067.1| GTP-binding protein Era [Arcobacter nitrofigilis DSM 7299]
          Length = 293

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 27/181 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           GY + ++G  NAGKSSL N L  + +A+V+     TR    I +  E   V   DT GI 
Sbjct: 5   GY-VSVVGRPNAGKSSLLNWLVGEKIAMVSHKANATRKRSNIIVMHEDDQVIFVDTPGIH 63

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLY 332
           ET+ ++ +  +      + + DLIL L  +  + +      +   KN   I + TK D  
Sbjct: 64  ETEKLLNQFMLDEALKAMGDCDLILFLAPVTDQVKYYEEFLLKNKKNTKHILLLTKIDFV 123

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSI--LSNKFKK-LPFSIPSHKRHLYHLSQTVRY 389
           S                  EE++ K+K     S+K++  +P SI     H   L   V+Y
Sbjct: 124 SN-----------------EEVLAKMKEYEKFSDKYESIIPVSIKKATTHADILDVVVKY 166

Query: 390 L 390
           L
Sbjct: 167 L 167


>gi|293406034|ref|ZP_06650024.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|291426887|gb|EFE99915.1| conserved hypothetical protein [Escherichia coli FVEC1412]
          Length = 137

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVLAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|88809126|ref|ZP_01124635.1| hypothetical protein WH7805_05521 [Synechococcus sp. WH 7805]
 gi|88787068|gb|EAR18226.1| hypothetical protein WH7805_05521 [Synechococcus sp. WH 7805]
          Length = 312

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 82/195 (42%), Gaps = 24/195 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L    VAI + +  TTR+ L   L      + + DT G
Sbjct: 11  RSGF-VALIGRPNVGKSTLVNQLVGDKVAITSPVAQTTRNRLRAILTTAEAQLILVDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNI---- 320
           I +   ++ +  ++     +   D +LLL E            +N  ++   P  +    
Sbjct: 70  IHKPHHLLGERLVQSARSAIGEVDQVLLLLEGCEPPGRGDAFIVNLLRQQRLPVQVVLNK 129

Query: 321 -DFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            D +    + +  + Y +         H   + TGEG  EL+  + +++    +  P  +
Sbjct: 130 WDQVPTARRPEADAAYRDLLAESGWPIHHCCALTGEGCPELVRAVSALMPEGPQLYPADM 189

Query: 374 PSHKRHLYHLSQTVR 388
            S +     +++ +R
Sbjct: 190 VSDQPERLLMAELIR 204


>gi|293406540|ref|ZP_06650466.1| GTPase [Escherichia coli FVEC1412]
 gi|298382279|ref|ZP_06991876.1| yeeP protein [Escherichia coli FVEC1302]
 gi|291426546|gb|EFE99578.1| GTPase [Escherichia coli FVEC1412]
 gi|298277419|gb|EFI18935.1| yeeP protein [Escherichia coli FVEC1302]
          Length = 290

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVLAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|260845837|ref|YP_003223615.1| hypothetical protein ECO103_3763 [Escherichia coli O103:H2 str.
           12009]
 gi|257760984|dbj|BAI32481.1| hypothetical protein ECO103_3763 [Escherichia coli O103:H2 str.
           12009]
          Length = 290

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTRKVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  CFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|302388761|ref|YP_003824582.1| small GTP-binding protein [Thermosediminibacter oceani DSM 16646]
 gi|302199389|gb|ADL06959.1| small GTP-binding protein [Thermosediminibacter oceani DSM 16646]
          Length = 196

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+V++G  N GKS +FN L    V  V++ PGTT ++      + G + +I DT G+   
Sbjct: 33  KLVLVGTPNVGKSVIFNRLTGAYVT-VSNYPGTTVEIFRGTGRIGGEIFEIIDTPGMYSL 91

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
             I E+E + RT L  EN D+++
Sbjct: 92  MPITEEERVTRTLLFNENFDIVV 114


>gi|322421095|ref|YP_004200318.1| ribosome-associated GTPase EngA [Geobacter sp. M18]
 gi|320127482|gb|ADW15042.1| ribosome-associated GTPase EngA [Geobacter sp. M18]
          Length = 440

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD---VLTIDLDLEGYLVKISDTAGIR 278
           I I+G  N GKS+LFN L  +  A+V D+PG TRD         DL   LV   DT G  
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYAEVTRFDLPFILV---DTGGFE 61

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            ET D + ++  +++   ++ ADLIL +
Sbjct: 62  PETSDKLLQQMREQSRFAMDEADLILFV 89



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I ++G  N GKS+L N L   +  +     GTTRD +     +      + DTAGIR  
Sbjct: 177 RIAVVGRPNVGKSTLVNRLLGYERVVANPTAGTTRDAVDTRFTVNKKPYLLIDTAGIRRK 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +T   VEK  +      +E AD++L++
Sbjct: 237 GKTVQKVEKYSVMDALRSIERADVVLIV 264


>gi|328907177|gb|EGG26943.1| GTP-binding protein Era [Propionibacterium sp. P08]
          Length = 340

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 39/257 (15%)

Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E 
Sbjct: 28  ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTGEK 87

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316
             + + DT G+ +   ++ +      F      D+I +    N +          +I+ F
Sbjct: 88  SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIADF 147

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLI-------------------SSFTGEGLEELINK 357
           P+    I + TKSDL S      +HL+                   S+ +GE ++E+ + 
Sbjct: 148 PRRPTLIALATKSDLVSK-ARMAEHLVAIGKLQEEVGIEFAEIIPCSAVSGEQVDEVRDA 206

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           I S+L       P    + +     +++ +R   +  + E+      +  +L +  V +G
Sbjct: 207 IVSLLPEGPAYYPDGEVTDEPTDTLVAELIREAALEGVREE------LPHSLAVEIVEMG 260

Query: 418 KITGCVDVEQLLDIIFS 434
              G  D   LLD+  S
Sbjct: 261 LREGQPDDHPLLDVYAS 277


>gi|323952506|gb|EGB48379.1| hypothetical protein ERKG_01457 [Escherichia coli H252]
          Length = 290

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G S AGKSSL NAL + ++  V+D+   TR+V    L+  G+ + I+D  G+ E+ D 
Sbjct: 41  IMGKSGAGKSSLCNALFQGEITPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRDR 100

Query: 284 -VEKEGIKRTFLEVENADLILLL 305
             E E + R  L     DL+L L
Sbjct: 101 DAEYEALYRDIL--PELDLVLWL 121


>gi|319892329|ref|YP_004149204.1| GTP-binding protein HflX [Staphylococcus pseudintermedius HKU10-03]
 gi|317162025|gb|ADV05568.1| GTP-binding protein HflX [Staphylococcus pseudintermedius HKU10-03]
 gi|323464572|gb|ADX76725.1| GTP-binding protein, putative [Staphylococcus pseudintermedius
           ED99]
          Length = 410

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 19/184 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKSS FN L   D     D+   T D  +  L + +G+ + ISDT G  
Sbjct: 205 FQVALIGYTNAGKSSWFNTLTAADT-YEQDLLFATLDPKSRQLKINDGFEMVISDTVGFI 263

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFP-----------KNIDFIFIG 326
           +       E  K T  E   ADL++ ++   +++ +I +            ++I  + I 
Sbjct: 264 QKLPTTLIEAFKSTLEEARQADLLIHVVDASHAEYKIQYDTVNEIVQELDMQDIPQVVIF 323

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL----SNKFKKLPFSIPSHKR-HLY 381
            K DL++  T       S F     E  I K+K++L      +F      +PS     LY
Sbjct: 324 NKKDLFTGTTTPVTQYPSVFVSSKNEADIEKVKNLLFQAIQKQFDFYTAQLPSSAADQLY 383

Query: 382 HLSQ 385
           HL Q
Sbjct: 384 HLKQ 387


>gi|253996056|ref|YP_003048120.1| ferrous iron transport protein B [Methylotenera mobilis JLW8]
 gi|253982735|gb|ACT47593.1| ferrous iron transport protein B [Methylotenera mobilis JLW8]
          Length = 596

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I +LG  N GKS+LFN ++    A V + PG T D+L+  + L G +V++ D  GI + 
Sbjct: 3   RIALLGMPNTGKSTLFNRISGAS-ARVGNWPGITVDLLSAKILLGGNIVELIDLPGIYDL 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
               E E + R F+     +L+++L  +NS +
Sbjct: 62  HGFSEDEQVVRHFITNNPVNLLVVL--LNSTQ 91


>gi|153852706|ref|ZP_01994143.1| hypothetical protein DORLON_00125 [Dorea longicatena DSM 13814]
 gi|149754348|gb|EDM64279.1| hypothetical protein DORLON_00125 [Dorea longicatena DSM 13814]
          Length = 410

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 16/129 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           I I G  NAGKSSL NAL  +++AIV+D+ GTT D +  +++L   G +V I DT G+ +
Sbjct: 14  IGIFGRRNAGKSSLINALTGQNLAIVSDVRGTTTDPVFKSMELLPLGPIVMI-DTPGLDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----------KNIDFIFIGTKS 329
             ++  K  I++ +  +   D+ +L+  I+    I+            KNI  + +  K+
Sbjct: 73  EGEL-GKLRIQKAYQVLNKTDIAVLV--IDGTSGITPQDNAILTRIQDKNIPLLLVLNKA 129

Query: 330 DLYSTYTEE 338
           DL S +T +
Sbjct: 130 DLVSEHTHQ 138


>gi|297626315|ref|YP_003688078.1| GTP binding protein [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922080|emb|CBL56648.1| GTP binding protein [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 449

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 38/60 (63%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +++ I+G  N GKSSL N LA    ++V+D+ GTT D +   + + G   ++ DTAGIR+
Sbjct: 188 HRVAIVGKPNVGKSSLLNRLASAQRSVVSDVSGTTVDPVDELVTIAGEPFRLIDTAGIRK 247



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++ D +  G    + DT G     
Sbjct: 16  VAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYDANWAGREFVLVDTGGW---- 71

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
            I + EG+     ++  + ++ AD +L +
Sbjct: 72  -IAKAEGMSAHIAEQAEMAIQLADAVLFV 99


>gi|229918701|ref|YP_002887347.1| GTP-binding protein EngA [Exiguobacterium sp. AT1b]
 gi|229470130|gb|ACQ71902.1| small GTP-binding protein [Exiguobacterium sp. AT1b]
          Length = 436

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL N++  ++  IV++I GTTRD +      +G    I DTAG+R+   +
Sbjct: 180 LIGRPNVGKSSLTNSILGEERVIVSNIAGTTRDAIDTPFTRDGQEYVIIDTAGMRKRGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               E+  + R    +E ++++L++
Sbjct: 240 YESTERYSVMRAQKAIERSNVVLVV 264



 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +    V+IV D PG TRD +    +       + DT GI   D
Sbjct: 6   VAIVGRPNIGKSTIFNRIIGDRVSIVDDKPGVTRDRIYGTGEWLNRKFHLIDTGGIEVGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           + +  +   +  L ++ AD+I+ +  +N ++ I+
Sbjct: 66  EPLLVQMRHQAELAIDEADVIIFM--VNGREGIT 97


>gi|224024977|ref|ZP_03643343.1| hypothetical protein BACCOPRO_01708 [Bacteroides coprophilus DSM
           18228]
 gi|224018213|gb|EEF76211.1| hypothetical protein BACCOPRO_01708 [Bacteroides coprophilus DSM
           18228]
          Length = 397

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 8/120 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276
           N   I + G  N+GKSSL NAL  ++ A+V+++ GTT D +   +++ G    +  DTAG
Sbjct: 11  NRIHIGLFGKRNSGKSSLINALTGQETALVSEVAGTTTDPVYKPMEIHGLGPCVFIDTAG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFP---KNIDFIFIGTKSD 330
           + +  D+     I++T   +E  D+ LL+   ++I  + E +     KNI  I++  ++D
Sbjct: 71  LDDEGDLGALR-IRQTLKAMERTDIALLVCRDEQIGPEMEWAGQLKEKNIPTIWVLNQAD 129


>gi|319442278|ref|ZP_07991434.1| bifunctional cytidylate kinase/GTPase Der [Corynebacterium
           variabile DSM 44702]
          Length = 567

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 40/65 (61%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I+    ++ ++G  N GKSSL N +  +D ++V ++ GTT D +   ++LE  + +  DT
Sbjct: 298 IVAGPRRVALVGRPNVGKSSLLNKITGEDRSVVDNVAGTTVDPVDSVVELEQQMWRFVDT 357

Query: 275 AGIRE 279
           AGIR+
Sbjct: 358 AGIRK 362



 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKS+L N    +  A+V D PG TRD ++   D  G    + DT G
Sbjct: 132 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYIGDWGGRRFWVQDTGG 186


>gi|310658154|ref|YP_003935875.1| iron-only hydrogenase maturation protein [Clostridium sticklandii
           DSM 519]
 gi|308824932|emb|CBH20970.1| Iron-only hydrogenase maturation protein [Clostridium sticklandii]
          Length = 398

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 12/98 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  NAGKSSL NA+ ++ V++V+DI GTT D +   ++L  Y  V   DTAG
Sbjct: 8   NRTHIGIFGKRNAGKSSLLNAITEQKVSLVSDIGGTTTDPVKKAMELLPYGPVLFIDTAG 67

Query: 277 IRETDDI-----VEKEGIKRTFLEVENADLILLLKEIN 309
           +   DD+     + K   K  F ++   D  L++ +IN
Sbjct: 68  L---DDVGVLGELRKNRAKEMFTQI---DFALIVHDIN 99


>gi|157737929|ref|YP_001490613.1| GTP-binding protein Era [Arcobacter butzleri RM4018]
 gi|157699783|gb|ABV67943.1| GTP-binding protein Era-like protein [Arcobacter butzleri RM4018]
          Length = 294

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 23/149 (15%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + + GY + ++G  NAGKSSL N L  + +A+V+     TR    I +  E   V   DT
Sbjct: 1   MTKCGY-VSVVGRPNAGKSSLLNWLVGEKIAMVSHKANATRKRSNIIVMHEDDQVIFIDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIG 326
            GI ET+ ++ +  +      + + DLIL L  +  K  IS+         KN+  I + 
Sbjct: 60  PGIHETEKLLNQYMLDEALKAMGDCDLILYLAPVTDK--ISYYEDFLEKNKKNVKHILLL 117

Query: 327 TKSDL------------YSTYTEEYDHLI 343
           TK D             Y  Y ++Y+ +I
Sbjct: 118 TKIDFVSADELMLKLKEYEKYNDKYEAII 146


>gi|170683175|ref|YP_001743150.1| putative GTPase [Escherichia coli SMS-3-5]
 gi|170520893|gb|ACB19071.1| putative GTPase [Escherichia coli SMS-3-5]
          Length = 290

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G S AGKSSL NAL + ++  V+D+   TR+V    L+  G+ + I+D  G+ E+ D 
Sbjct: 41  IMGKSGAGKSSLCNALFQGEITPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRDR 100

Query: 284 -VEKEGIKRTFLEVENADLILLL 305
             E E + R  L     DL+L L
Sbjct: 101 DAEYEALYRDIL--PELDLVLWL 121


>gi|319949180|ref|ZP_08023269.1| GTP-binding protein Der [Dietzia cinnamea P4]
 gi|319437166|gb|EFV92197.1| GTP-binding protein Der [Dietzia cinnamea P4]
          Length = 488

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 30/192 (15%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           S+ ++ E      ++ ++G  N GKSSL N L  +D A+V ++ GTT D +   ++L G 
Sbjct: 214 SKARMREAADVPRRVALVGKPNVGKSSLLNKLTGEDRAVVDNVAGTTVDPVDSLVELGGR 273

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLL---KEINSKKE-------- 313
             +  DTAG+R   +     E     RT   +E A++++LL    E  ++++        
Sbjct: 274 TWRFVDTAGLRRKVNQAYGHEYYASLRTRGAIEAAEVVVLLLDASEPITEQDLRVISMVA 333

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL--------ISSFTGEGLEELINKI 358
                  I+F K  D +    + DL      E   +        IS+ TG  L +L+  +
Sbjct: 334 DAGRALVIAFNK-WDLVDEDRRYDLDKEIDRELSRVLSWAHRVNISAKTGRALAKLVPAM 392

Query: 359 KSILSNKFKKLP 370
           ++ L +  K++P
Sbjct: 393 ETALDSWDKRIP 404



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D+PG TRD ++ +    G    + DT G  +  
Sbjct: 55  VAIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYEALWNGRTFMVQDTGGWEQDA 114

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             + +   ++  + +  ADLI+L+
Sbjct: 115 KGMHRSIAQQAEIAMGTADLIVLV 138


>gi|315637675|ref|ZP_07892880.1| GTP-binding protein Era [Arcobacter butzleri JV22]
 gi|315478022|gb|EFU68750.1| GTP-binding protein Era [Arcobacter butzleri JV22]
          Length = 294

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 23/145 (15%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           GY + ++G  NAGKSSL N L  + +A+V+     TR    I +  E   V   DT GI 
Sbjct: 5   GY-VSVVGRPNAGKSSLLNWLVGEKIAMVSHKANATRKRSNIIVMHEDDQVIFIDTPGIH 63

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSD 330
           ET+ ++ +  +      + + DLIL L  +  K  IS+         KN+  I + TK D
Sbjct: 64  ETEKLLNQYMLDEALKAMGDCDLILYLAPVTDK--ISYYEDFLEKNKKNVKHILLLTKID 121

Query: 331 L------------YSTYTEEYDHLI 343
                        Y  Y ++Y+ +I
Sbjct: 122 FVSADELMLKLKEYEKYNDKYEAII 146


>gi|225850861|ref|YP_002731095.1| ribosome biogenesis GTP-binding protein YsxC [Persephonella marina
           EX-H1]
 gi|225646661|gb|ACO04847.1| ribosome biogenesis GTP-binding protein YsxC [Persephonella marina
           EX-H1]
          Length = 203

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 30/156 (19%)

Query: 192 VLNDILFLKNDISSH-ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           V+  + F+K+ ++     Q K  E+        ++G SN GKSSL NA+ K+++A V+  
Sbjct: 3   VIKKVQFIKSAVNPKDYPQPKYPEV-------AVVGRSNVGKSSLINAIFKRNIAKVSSS 55

Query: 251 PGTTR--------DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           PG TR        D ++  +DL GY       A + + +    K+ I++ F   EN  L+
Sbjct: 56  PGKTRLINFFLLNDRISF-VDLPGY-----GYAAVSKAERAKWKKMIEKYFQTRENLSLV 109

Query: 303 LLL---KEINSKKEISFPK-----NIDFIFIGTKSD 330
           ++L   +   +K +I   +      I +I + TK+D
Sbjct: 110 IMLVDSRHPPTKLDIMMKEWLEDLGIPYIVVATKAD 145


>gi|148380897|ref|YP_001255438.1| GTP-binding protein Era [Clostridium botulinum A str. ATCC 3502]
 gi|153932263|ref|YP_001385205.1| GTP-binding protein Era [Clostridium botulinum A str. ATCC 19397]
 gi|153936986|ref|YP_001388674.1| GTP-binding protein Era [Clostridium botulinum A str. Hall]
 gi|226741172|sp|A7FXK1|ERA_CLOB1 RecName: Full=GTPase Era
 gi|226741199|sp|A5I626|ERA_CLOBH RecName: Full=GTPase Era
 gi|148290381|emb|CAL84508.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|152928307|gb|ABS33807.1| GTP-binding protein Era [Clostridium botulinum A str. ATCC 19397]
 gi|152932900|gb|ABS38399.1| GTP-binding protein Era [Clostridium botulinum A str. Hall]
          Length = 296

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ + I+G  N GKS+L NA+ K+ ++IV+  P TTR+ +   L  + Y +   DT
Sbjct: 1   MFKSGF-VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +K     +++ DL+L L
Sbjct: 60  PGIHKPKHKLGEYMVKSASEAMKDVDLVLFL 90


>gi|300819090|ref|ZP_07099293.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|300528390|gb|EFK49452.1| conserved hypothetical protein [Escherichia coli MS 107-1]
          Length = 290

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G S AGKSSL NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ 
Sbjct: 39  IGIMGKSGAGKSSLCNALFQGEVTPVSDVYAGTREVQRFRLSGHGHSMVITDLPGVGESR 98

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEINSK 311
           D   E E + R  L     DL+L L + + +
Sbjct: 99  DRDAEYEALYRDIL--PELDLVLWLIKADDR 127


>gi|111221687|ref|YP_712481.1| GTP-binding protein EngA [Frankia alni ACN14a]
 gi|111149219|emb|CAJ60904.1| GTP-binding protein [Frankia alni ACN14a]
          Length = 502

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D    G    + DT G     
Sbjct: 64  VAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRIAYDAVWNGRRFTLVDTGGWEPDA 123

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD--- 330
             +  +  ++    ++ AD +L + ++ +           +     +  I +  K D   
Sbjct: 124 SGLAAQVSEQASAALDTADAVLFIVDVTTGATDADEAVARVLHRSGLPVILVANKVDDNR 183

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                  L+     E  H +S+  G G  +L++ + ++L    +++
Sbjct: 184 FESDAAALWGLGLGE-PHPVSALHGRGSGDLLDAVLAVLPEAPREV 228



 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N +A    ++V D+ GTTRD +   + + G      DTAG+R 
Sbjct: 237 RVALIGRPNVGKSSLLNKIAGSRRSLVHDVAGTTRDPVDELVTVGGEEWMFIDTAGLRR 295


>gi|329850675|ref|ZP_08265520.1| GTP-binding protein HflX [Asticcacaulis biprosthecum C19]
 gi|328840990|gb|EGF90561.1| GTP-binding protein HflX [Asticcacaulis biprosthecum C19]
          Length = 441

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 34/189 (17%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y IV L G++NAGKS+LFN L + +V +  D+   T D     L L  G    +SDT G 
Sbjct: 210 YPIVALVGYTNAGKSTLFNHLTRAEV-VAKDLLFATLDTTLRTLKLPNGRSAMLSDTVGF 268

Query: 278 RETDDIVEK--EGIKRTFLEVENADLIL-----------------------LLKEINSKK 312
               D+  +     + T  EVE ADLIL                       +L +++  +
Sbjct: 269 --ISDLPHELVAAFRATLEEVEQADLILHVRDVSNPETEAQRQDVEQVLQHILPDLDRGR 326

Query: 313 EISFPKNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKK 368
                  ID +   +K  LY+      D      +S+ TGEG+E L+ ++ +++    ++
Sbjct: 327 MFEVWNKIDLLDPDSKEVLYARSVTSRDAQKPLPVSAVTGEGIEALLARVANLVDADGEE 386

Query: 369 LPFSIPSHK 377
           +   +  H+
Sbjct: 387 IDLVLEPHQ 395


>gi|163785853|ref|ZP_02180323.1| GTPase, MMR1/HSR1 family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159878877|gb|EDP72911.1| GTPase, MMR1/HSR1 family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 238

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +LG+ N GKSS+ N L KK VA V+  PG TR  + I LD + +L+   DT GI
Sbjct: 91  VLGYPNVGKSSVINTLKKKKVATVSPKPGMTRGEMLIKLDEDIFLI---DTPGI 141


>gi|254294018|ref|YP_003060041.1| GTP-binding proten HflX [Hirschia baltica ATCC 49814]
 gi|254042549|gb|ACT59344.1| GTP-binding proten HflX [Hirschia baltica ATCC 49814]
          Length = 445

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 30/198 (15%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R G  IV L G++NAGKS+LFN+L    V    D+P  T D    D++L  G  + + DT
Sbjct: 202 RRGAPIVALAGYTNAGKSTLFNSLTHSSV-FAADMPFATLDPTARDVELSSGKKISMIDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID------------- 321
            G          E  + T  E   ADL+L +++I+  +      +++             
Sbjct: 261 VGFITDLPTHLIESFRATIEEAIEADLLLHVRDISHPETDRQSSDVNDVLTKLEQDLNAD 320

Query: 322 ---FIFIGTKSDLYS--------TYTEEYDH--LISSFTGEGLEELINKIKSILSNKFKK 368
               I +  KSD  S        T  E  D   L S+ TGEGL++L+  ++  L    ++
Sbjct: 321 RPPVIEVWNKSDALSDDVLTALKTTVENRDDIALTSATTGEGLDDLMQMVQDKLFASTRE 380

Query: 369 LPFSI-PSHKRHLYHLSQ 385
               I P + R    L Q
Sbjct: 381 FELKIEPKYGRARSWLHQ 398


>gi|99034984|ref|ZP_01314786.1| hypothetical protein Wendoof_01000391 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 294

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 23/165 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G  NAGKS+L N++  K +AIVT    TTR  +          +  +D+ GI   +
Sbjct: 9   VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQIVFTDSPGIFSAE 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFPKNI---------DFIFIGTKSDL 331
             +EK  +K  +  V+++D+ LLL ++ N  K I   K I           I +  K+DL
Sbjct: 69  TKLEKALVKSAWSAVKDSDITLLLVDVSNYLKNIERIKTIFMRLQRTKGRCILVINKTDL 128

Query: 332 YST-------------YTEEYDHLISSFTGEGLEELINKIKSILS 363
                           Y  E   +IS+   +GL +L+N +  + S
Sbjct: 129 VKRPELKMAHEHLNLLYKFEKVFMISALKNDGLSDLMNYLSEVAS 173


>gi|170781664|ref|YP_001709996.1| GTP-binding protein EngA [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156232|emb|CAQ01374.1| putative GTP binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 502

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ILG  N GKSSL N  A ++  +V ++ GTTRD +   +++   + +  DTAGIR
Sbjct: 243 RVAILGRPNVGKSSLLNKAAGEERVVVNELAGTTRDPVDEQVEIADKVWRFVDTAGIR 300



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G
Sbjct: 70  LAVVGRPNVGKSALINRILGRREAVVEDTPGVTRDRVSYKAEYAGRWFTLVDTGG 124


>gi|149002005|ref|ZP_01826959.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|147759814|gb|EDK66804.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP14-BS69]
          Length = 92

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 46/85 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK 306
               ++   +  + +E AD+I+  +
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFCR 90


>gi|39939111|ref|NP_950877.1| GTP-binding protein Era [Onion yellows phytoplasma OY-M]
 gi|39722220|dbj|BAD04710.1| glycyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
          Length = 295

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I ILG  N GKS+L NAL ++ VAI +  P TTR  ++ I  +     + + DT GI + 
Sbjct: 12  IAILGRPNVGKSTLLNALTQQKVAITSAKPQTTRHKIIGICHEPNAQYIFV-DTPGINQY 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
             ++ ++     F  +++ DLIL L
Sbjct: 71  KHLLNQKMNNIAFQSIKDVDLILFL 95


>gi|223985698|ref|ZP_03635745.1| hypothetical protein HOLDEFILI_03051 [Holdemania filiformis DSM
           12042]
 gi|223962309|gb|EEF66774.1| hypothetical protein HOLDEFILI_03051 [Holdemania filiformis DSM
           12042]
          Length = 298

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 24/177 (13%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDT 274
           +++G+ + ++G  NAGKS+L NAL ++ VAI++  P TTR+ +  I  D +  ++ + DT
Sbjct: 1   MKSGF-VALIGRPNAGKSTLLNALVQQKVAIISPKPQTTRNSIRAIRTDADSQIIFV-DT 58

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP----- 317
            GI +    +  +  K  +      DLI  L +            +N+ +++  P     
Sbjct: 59  PGIHKPKHELGTQMNKEAYSAASGVDLIYYLVDGSVPFGSGDEFVLNTLRQMHLPVYLIL 118

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
             ID +      DL   + +  D      IS+ T   L++LI   K+ L++  +  P
Sbjct: 119 NKIDLLEKEQLIDLLLAWQQRMDFKEIIPISAKTQNNLDQLIEVTKNDLTDGVQYYP 175


>gi|257059220|ref|YP_003137108.1| small GTP-binding protein [Cyanothece sp. PCC 8802]
 gi|256589386|gb|ACV00273.1| small GTP-binding protein [Cyanothece sp. PCC 8802]
          Length = 531

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 20/242 (8%)

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           VQ    K     +L    +I + +++G+L        K+V+ G  +AGK+SL NAL  + 
Sbjct: 103 VQQIQDKVTQKALLNRSQEIEASLTRGEL--------KVVVFGTGSAGKTSLINALIGEM 154

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETD-DIVEKEGIKRTFLEVENAD 300
           V  V    GTT+   T  L L G    + I+DT GI E   +  ++E + R       AD
Sbjct: 155 VGNVEATMGTTQIGETYRLKLRGVSQEILITDTPGILEAGVEGTQREKLARQL--ATEAD 212

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDL----YSTYTEEYDHLISSFTGEGLEELIN 356
           L+L + + + ++    P  I    IG +S L       YTE+   LI     E +++LI 
Sbjct: 213 LLLFVVDNDLRQSEYDPLQI-LAKIGKRSLLIFNKIDLYTEDEISLIKQQLQERVKDLIG 271

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           +   IL     + PF + + K  +      +  ++  ++  +  G D+IA+N+ L S  L
Sbjct: 272 ESDLILIAANPQ-PFEVETGK-IIKAEPDIIPLIKRLAVVLRAEGEDLIADNILLQSQRL 329

Query: 417 GK 418
           G+
Sbjct: 330 GE 331


>gi|30693524|ref|NP_198812.2| GTP-binding family protein [Arabidopsis thaliana]
          Length = 616

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 11/94 (11%)

Query: 191 EVLNDI-----LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           E+LNDI     +    ++S  I + KL        ++ I+G  N GKS+L NAL +++  
Sbjct: 285 EMLNDIGSQDDVLTDENLSDEIDESKLP------LQLAIVGKPNVGKSTLLNALLEEERV 338

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +V    G TRD + +  + +G  V + DTAG  E
Sbjct: 339 LVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLE 372


>gi|332007113|gb|AED94496.1| GTP-binding protein [Arabidopsis thaliana]
          Length = 621

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 11/94 (11%)

Query: 191 EVLNDI-----LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           E+LNDI     +    ++S  I + KL        ++ I+G  N GKS+L NAL +++  
Sbjct: 290 EMLNDIGSQDDVLTDENLSDEIDESKLP------LQLAIVGKPNVGKSTLLNALLEEERV 343

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +V    G TRD + +  + +G  V + DTAG  E
Sbjct: 344 LVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLE 377


>gi|257064345|ref|YP_003144017.1| iron-only hydrogenase maturation protein HydF [Slackia
           heliotrinireducens DSM 20476]
 gi|256791998|gb|ACV22668.1| iron-only hydrogenase maturation protein HydF [Slackia
           heliotrinireducens DSM 20476]
          Length = 416

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 8/95 (8%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVK 270
           GE +  G+     G  NAGKSSL NA+  +++A+V+D PGTT D +   ++L   G +V 
Sbjct: 18  GERVHIGF----FGVRNAGKSSLVNAVTGQNLAVVSDTPGTTTDPVRKAMELLPVGPVV- 72

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I DT GI +T ++ E   +++    +++AD+ +L+
Sbjct: 73  IVDTPGIDDTGELGELR-VEKARRAMDSADVAVLV 106


>gi|124805918|ref|XP_001350575.1| GTP binding protein, putative [Plasmodium falciparum 3D7]
 gi|23496699|gb|AAN36255.1| GTP binding protein, putative [Plasmodium falciparum 3D7]
          Length = 874

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKK--DVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           IIRN   I I+G  N GKS++FN L +K  D +IV D+  +TRD L  +++ EGY  ++ 
Sbjct: 304 IIRNLPLISIIGRPNVGKSTIFNRLTRKYQDGSIVLDV-SSTRDKLYGEVEWEGYKFELV 362

Query: 273 DTAGI 277
           DT G+
Sbjct: 363 DTGGL 367


>gi|239816200|ref|YP_002945110.1| GTP-binding protein HSR1-related [Variovorax paradoxus S110]
 gi|239802777|gb|ACS19844.1| GTP-binding protein HSR1-related [Variovorax paradoxus S110]
          Length = 473

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           +I ++GH+NAGK+SL   L ++ +   V+  PGTTR V ++DL++ G   V+  DT G+
Sbjct: 10  RIAVVGHTNAGKTSLLRTLTRRANFGEVSQRPGTTRHVESVDLEVNGQAAVRFFDTPGL 68


>gi|302527998|ref|ZP_07280340.1| ribosome-associated GTPase EngA [Streptomyces sp. AA4]
 gi|302436893|gb|EFL08709.1| ribosome-associated GTPase EngA [Streptomyces sp. AA4]
          Length = 493

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 19/175 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D    G    + DT G     
Sbjct: 50  LAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVAYDAFWAGRRFTLVDTGGWEPDA 109

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN----------------SKKEISFPKNI--DFI 323
             ++    ++  + ++ AD +LL+ +                  SKK +    N   D  
Sbjct: 110 TGLQASVAQQAEMAMQTADAVLLVVDATVGATATDEAVARVLRRSKKPVLLAANKVDDDR 169

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
            +   + L+S    E  H +S+  G    +L++ I + L    ++   +    +R
Sbjct: 170 LLADTASLWSLGLGE-PHPVSALHGRSSGDLLDSIMAALPEAPREAGTATAGPRR 223



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N L+ +  ++V  + GTT D +   ++L+G + +  DTAG+R+ 
Sbjct: 223 RVALVGKPNVGKSSLLNRLSGEQRSVVDSVAGTTVDPVDSLVELDGEIWRFVDTAGLRKR 282

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305
               D  E     RT   ++ A++ L+L
Sbjct: 283 VNFADGAEYYASLRTKTAIDAAEVALVL 310


>gi|68067805|ref|XP_675836.1| GTP-binding protein [Plasmodium berghei strain ANKA]
 gi|56495245|emb|CAI00551.1| GTP-binding protein, putative [Plasmodium berghei]
          Length = 642

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK--DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +IIRN   + I+G  N GKS++FN L +K  + +IV D P +TRD      + +GY  ++
Sbjct: 57  KIIRNLPLVSIIGRPNVGKSTIFNRLTRKFQEGSIVLDKP-STRDKFYGKSEWDGYRFEV 115

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            DT G+   D+   KE   +  L +E + ++L +
Sbjct: 116 VDTGGLIFEDEKFSKEIRDQILLALEESSVVLFV 149



 Score = 36.6 bits (83), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG----YLVKISD 273
           N   I  +G  N GKSS+ N +   +  IV+ I GTT D  +ID+ ++G     + ++ D
Sbjct: 331 NTINISFIGKPNTGKSSILNKILNCNRFIVSPIAGTTID--SIDVLVKGKNDKRMYRLID 388

Query: 274 TAGIRE 279
           TAGI++
Sbjct: 389 TAGIQK 394


>gi|296444864|ref|ZP_06886826.1| GTP-binding protein Era [Methylosinus trichosporium OB3b]
 gi|296257532|gb|EFH04597.1| GTP-binding protein Era [Methylosinus trichosporium OB3b]
          Length = 312

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 28/180 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275
           R G+ + ++G  NAGKS+L N L    V+IV+    TTR ++  I +  E  ++ + DT 
Sbjct: 18  RCGF-VALVGAPNAGKSTLLNQLVGAKVSIVSRKAQTTRALVRGIAISGESQIILV-DTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL-----------KEINSK-KEISFPK----- 318
           GI      +E+  +        +AD ++LL           +EI +K  E+S PK     
Sbjct: 76  GIFAPKRRLERAMVASALSGAGDADAVVLLIDARRGLDAEVEEIIAKLNELSAPKILVLN 135

Query: 319 NIDFIFIGTKSDLYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            +D +   +   L +  T + D    ++IS+  G+G+ +L+ K+ S++    K  P+  P
Sbjct: 136 KVDVVPRESLLGLTAAVTRQADFAETYMISALNGDGVPDLLAKLASMM----KPSPWLYP 191


>gi|219850626|ref|YP_002465059.1| GTP-binding protein Era [Chloroflexus aggregans DSM 9485]
 gi|219544885|gb|ACL26623.1| GTP-binding protein Era [Chloroflexus aggregans DSM 9485]
          Length = 468

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL  + VAIV+  P TTR  +   L   G  +   DT G
Sbjct: 174 RSGF-VALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTPG 232

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           I E +  + K  ++     + NAD+I  + +I+ 
Sbjct: 233 IHEPNHRLGKLMVELAERTLPNADVICFMVDISQ 266


>gi|256832504|ref|YP_003161231.1| small GTP-binding protein [Jonesia denitrificans DSM 20603]
 gi|256686035|gb|ACV08928.1| small GTP-binding protein [Jonesia denitrificans DSM 20603]
          Length = 490

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N +A ++  +V D  GTTRD +   ++L+G      DTAGIR  
Sbjct: 230 RVALVGRPNVGKSSLLNKVAHENRVVVDDTAGTTRDPVDELIELKGRPWIFVDTAGIRRR 289

Query: 281 DDIVEKEGIK---RTFLEVENADLILLL 305
             +++        RT   +E A++ ++L
Sbjct: 290 VHMMKGADYYASLRTVAAIEKAEVAVIL 317



 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G
Sbjct: 57  LAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYPAEWAGRDFMLVDTGG 111


>gi|222099201|ref|YP_002533769.1| Small GTP-binding protein [Thermotoga neapolitana DSM 4359]
 gi|221571591|gb|ACM22403.1| Small GTP-binding protein [Thermotoga neapolitana DSM 4359]
          Length = 439

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 26/171 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           IV+ G  N GKSS  NAL  ++V+IV+D  GTT D +   ++L     V + DT G+ + 
Sbjct: 47  IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 106

Query: 281 DDI--VEKEGIKRTFLEVENA-------------DLILLLKEINSKKEISFPKNIDFI-F 324
            ++  +  E  +R F   +               D++ L KE+    EI F   ++ I  
Sbjct: 107 GELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEM----EIPFVVVVNKIDV 162

Query: 325 IGTKSD----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +G K++    LY +  E    L+S+   +G +++   I  IL    +++P+
Sbjct: 163 LGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD-EEIPY 212


>gi|118468050|ref|YP_888037.1| GTP-binding protein EngA [Mycobacterium smegmatis str. MC2 155]
 gi|118169337|gb|ABK70233.1| GTP-binding protein EngA [Mycobacterium smegmatis str. MC2 155]
          Length = 471

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 38  LAIVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDANWLGRRFVVQDTGGWEPDA 97

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++    +  + +  AD ++L+
Sbjct: 98  KGLQQLVADQALVAMRTADAVILV 121



 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N LA    ++V D+ GTT D +   ++L G   +  DTAG+R 
Sbjct: 211 RVALVGKPNVGKSSLLNRLAGDHRSVVHDMAGTTVDPVDSLIELGGKTWRFVDTAGLRR 269


>gi|253681508|ref|ZP_04862305.1| GTP-binding protein [Clostridium botulinum D str. 1873]
 gi|253561220|gb|EES90672.1| GTP-binding protein [Clostridium botulinum D str. 1873]
          Length = 397

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 2/94 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G +N+GKSS+ NA+  +D+++V+++ GTT D ++  ++L  +  V   DTAG
Sbjct: 8   NRKHIALYGKTNSGKSSILNAIIGQDISLVSNVKGTTTDPVSKAMELIPFGPVLFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           I +   +     ++RT   +E  DL + + +IN+
Sbjct: 68  IDDESQLGNLR-VERTLKTLEKTDLAIYIMDINN 100


>gi|269218471|ref|ZP_06162325.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211582|gb|EEZ77922.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 560

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ +LG  N GKSSL N LA  +  +V    GTTRD +   ++L+G      DTAGIR
Sbjct: 297 RVALLGRPNVGKSSLLNRLAGSERVVVDPTAGTTRDPVDEAIELDGQTWIFVDTAGIR 354



 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  + VA+V D+PG TRD +       G    + DT G
Sbjct: 124 LAVVGRPNVGKSTLVNRIVGRRVAVVQDVPGVTRDRVGYPASWAGRDFTLVDTGG 178


>gi|75763043|ref|ZP_00742832.1| GTP-binding protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74489475|gb|EAO52902.1| GTP-binding protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 251

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           +    +  ++  + ++ AD+I+ +
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFM 89



 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++G  N GKSSL +AL  ++  IV++I G TRD +      +     I DTAG+R  D
Sbjct: 180 LIGRPNVGKSSLVHALLGQERVIVSNIAGPTRDAVDTPYSTDDQDYVIIDTAGMRTKD 237


>gi|38233787|ref|NP_939554.1| GTP-binding protein EngA [Corynebacterium diphtheriae NCTC 13129]
 gi|38200048|emb|CAE49724.1| Putative GTP-binding protein [Corynebacterium diphtheriae]
          Length = 547

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 41/65 (63%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I+    ++ ++G  N GKSSL N ++ +D ++V ++ GTT D +   + L+ +L K  DT
Sbjct: 281 IVEGPRRVALVGKPNVGKSSLLNKMSGEDRSVVDNVSGTTVDPVDSIVKLDKHLWKFIDT 340

Query: 275 AGIRE 279
           AG+R+
Sbjct: 341 AGLRK 345



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKSSL N    +  A+V D PG TRD ++   D  G    + DT G
Sbjct: 115 VAIVGRPNVGKSSLVNRFLGRREAVVEDFPGVTRDRISYLADWGGRRFWVQDTGG 169


>gi|302871114|ref|YP_003839750.1| small GTP-binding protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302573973|gb|ADL41764.1| small GTP-binding protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 403

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 8/88 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I I G  NAGKSSL NA+  + +AIV++ PGTT D +   +++   G +V I DTAGI  
Sbjct: 12  IAIFGKRNAGKSSLINAITNQPIAIVSETPGTTTDPVYKSMEILPLGPVVLI-DTAGI-- 68

Query: 280 TDDIVE--KEGIKRTFLEVENADLILLL 305
            DD+ E  K  +++T   +   D+ +L+
Sbjct: 69  -DDVGELGKLRVEKTLEVLNKTDIAILV 95


>gi|168179376|ref|ZP_02614040.1| GTP-binding protein Era [Clostridium botulinum NCTC 2916]
 gi|182669495|gb|EDT81471.1| GTP-binding protein Era [Clostridium botulinum NCTC 2916]
          Length = 296

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ + I+G  N GKS+L NA+ K+ ++IV+  P TTR+ +   L  + Y +   DT
Sbjct: 1   MFKSGF-VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +K     +++ DL+L L
Sbjct: 60  PGIHKPKHKLGEYMVKSASDAMKDVDLVLFL 90


>gi|78358630|ref|YP_390079.1| GTP-binding protein Era [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78221035|gb|ABB40384.1| GTP-binding protein Era [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 308

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS++ N+L  + VAIVT  P TTR+ +   L      V   DT G
Sbjct: 8   RCGW-VALMGPPNAGKSTMMNSLLGQKVAIVTPKPQTTRNQIVGILTQPDAQVVFMDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I +    + +  ++  +  ++ AD+I+++ + N
Sbjct: 67  IHQLRGKMNRLLLQAAWQSMDGADVIMVVLDSN 99


>gi|168181631|ref|ZP_02616295.1| GTP-binding protein Era [Clostridium botulinum Bf]
 gi|237796398|ref|YP_002863950.1| GTP-binding protein Era [Clostridium botulinum Ba4 str. 657]
 gi|259645941|sp|C3L3F3|ERA_CLOB6 RecName: Full=GTPase Era
 gi|182675144|gb|EDT87105.1| GTP-binding protein Era [Clostridium botulinum Bf]
 gi|229262668|gb|ACQ53701.1| GTP-binding protein Era [Clostridium botulinum Ba4 str. 657]
          Length = 296

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ + I+G  N GKS+L NA+ K+ ++IV+  P TTR+ +   L  + Y +   DT
Sbjct: 1   MFKSGF-VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +K     +++ DL+L L
Sbjct: 60  PGIHKPKHKLGEYMVKSASDAMKDVDLVLFL 90


>gi|149194255|ref|ZP_01871352.1| GTP-binding protein Era [Caminibacter mediatlanticus TB-2]
 gi|149135430|gb|EDM23909.1| GTP-binding protein Era [Caminibacter mediatlanticus TB-2]
          Length = 293

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 19/154 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  NAGKS+L N L  + +A+V+     +R  +   +      + + DT G+ E + +
Sbjct: 9   IIGKPNAGKSTLLNWLLGEKIALVSPKANASRKRVNAIVMHNDDQIILLDTPGLHEKEKL 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEIS------FPKNIDFIFIGTKSDLYS---- 333
           + K  +K     + ++DL+L L ++    E          KNI  I + TK+DL +    
Sbjct: 69  LNKFMLKEALKALSDSDLVLFLADVRDDLEGYEWFLELNKKNIPHIVVLTKTDLVNEEEV 128

Query: 334 -TYTEEYDHL--------ISSFTGEGLEELINKI 358
               EEY  +        IS+  G+G EEL+++I
Sbjct: 129 KNKIEEYKKIGKALVIIPISAIEGKGKEELLDEI 162


>gi|256372048|ref|YP_003109872.1| GTP-binding protein Era [Acidimicrobium ferrooxidans DSM 10331]
 gi|317374861|sp|C7LZP1|ERA_ACIFD RecName: Full=GTPase Era
 gi|256008632|gb|ACU54199.1| GTP-binding protein Era [Acidimicrobium ferrooxidans DSM 10331]
          Length = 287

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 20/166 (12%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I R+G+ + ++G +N GKSSL NALA +   IV+  P TTR  + +   +    + + DT
Sbjct: 9   IRRSGF-VAVIGRTNVGKSSLVNALAGERATIVSRHPNTTRRSVRVISRVGDAELVLVDT 67

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL-----------KEINSK---KEISFPKNI 320
            GI    D +     +    E + AD  LL+           +E+ S+    +++    I
Sbjct: 68  PGIAAAHDELSARLRRWVDDEWDGADRALLVVDAERGVGARERELASRLKPSDVAVVARI 127

Query: 321 DFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           D +     +   ++L      EY  + S  TGEG+EEL + + S L
Sbjct: 128 DRVRRARTLAVLAELAQVPLAEY-FVASVRTGEGIEELRSYLASSL 172


>gi|303256256|ref|ZP_07342272.1| GTP-binding protein [Burkholderiales bacterium 1_1_47]
 gi|331001317|ref|ZP_08324943.1| hydrogenase maturation GTPase HydF [Parasutterella
           excrementihominis YIT 11859]
 gi|302860985|gb|EFL84060.1| GTP-binding protein [Burkholderiales bacterium 1_1_47]
 gi|329569044|gb|EGG50840.1| hydrogenase maturation GTPase HydF [Parasutterella
           excrementihominis YIT 11859]
          Length = 404

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I G  NAGKSS+ NAL K+++A+V+D+ GTT D +   ++ L    V I DTAGI + 
Sbjct: 15  IGIFGRRNAGKSSVINALTKQNIALVSDVAGTTTDPVFKAMEILPLGPVMIIDTAGIDDI 74

Query: 281 DDI 283
            D+
Sbjct: 75  GDL 77


>gi|313665394|ref|YP_004047265.1| GTP-binding protein Era [Mycoplasma leachii PG50]
 gi|312949205|gb|ADR23801.1| GTP-binding protein Era [Mycoplasma leachii PG50]
          Length = 301

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 32/175 (18%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           ++G+ + I+G  N GKS+L N L  + ++IVT+ P TTR ++  I    + Y +   DT 
Sbjct: 5   KSGF-VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDQYQIVFIDTP 63

Query: 276 GIRET----DDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISF---PKNIDF--I 323
           G+  T    D ++    +K T    ++ D+IL L    E+  K ++      KN+D   I
Sbjct: 64  GVHTTKKQLDKVLNTSALKST----KDVDVILFLAPSDEVIGKNDLFLLKQIKNLDVFKI 119

Query: 324 FIGTKSDL------------YSTYTEEYDHLI--SSFTGEGLEELINKIKSILSN 364
            + TK+D             +S Y +++D +I  SS T   +E+L+  I + LS+
Sbjct: 120 LVITKADSVTKEQLILKANEWSAYQDQFDEIIITSSITNLNIEKLLELIVNNLSD 174


>gi|281412764|ref|YP_003346843.1| ribosome biogenesis GTP-binding protein YsxC [Thermotoga
           naphthophila RKU-10]
 gi|281373867|gb|ADA67429.1| ribosome biogenesis GTP-binding protein YsxC [Thermotoga
           naphthophila RKU-10]
          Length = 195

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 26/167 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRE 279
           +  +G SN GKSSL NAL  K +A V+  PG TR +    ++ + Y V +     A + +
Sbjct: 26  VAFVGRSNVGKSSLLNALFNKKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSK 85

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDL 331
            + ++ K  ++  F    +  ++ LL +     +      + + K  NI F  + TK D 
Sbjct: 86  KERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDK 145

Query: 332 ----------------YSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                           +S Y E      SS TGEG+ EL++ I ++L
Sbjct: 146 VKMSERAKKLEEHQKEFSRYGEYTIIPTSSVTGEGISELLDLISTLL 192


>gi|225017068|ref|ZP_03706260.1| hypothetical protein CLOSTMETH_00993 [Clostridium methylpentosum
           DSM 5476]
 gi|224950235|gb|EEG31444.1| hypothetical protein CLOSTMETH_00993 [Clostridium methylpentosum
           DSM 5476]
          Length = 439

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 21/175 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           N   + I+G++NAGKS+L NAL    V     +  T  D     L+L +G  V + DT G
Sbjct: 219 NVTSVAIVGYTNAGKSTLLNALTDAGVLAENKLFATL-DPTARALELPDGKSVLLIDTVG 277

Query: 277 I--RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDF 322
           +  R    +V  E  K T  E  NADLIL + ++++ +  S  K            +I  
Sbjct: 278 LISRLPHHLV--EAFKSTLEEAANADLILHVCDVSNDEVESQVKVVHQLLGELGCGSIPV 335

Query: 323 IFIGTKSD--LYSTYTEEYDH-LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           + +  K D   +  Y  E D  +IS+ TG G + L++KI S L    +++   IP
Sbjct: 336 LTVLNKCDKIPFQPYLSEPDSVMISAKTGFGFDNLLHKIASSLEQTSRRMKLLIP 390


>gi|148265178|ref|YP_001231884.1| GTP-binding protein Era [Geobacter uraniireducens Rf4]
 gi|259645947|sp|A5G693|ERA_GEOUR RecName: Full=GTPase Era
 gi|146398678|gb|ABQ27311.1| GTP-binding protein Era [Geobacter uraniireducens Rf4]
          Length = 297

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 99/233 (42%), Gaps = 23/233 (9%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N +    + I +D P TTR+ +    +L G  +   DT G
Sbjct: 7   RSGF-VSIIGRPNVGKSTLLNRILGDKIVITSDKPQTTRNRIQGIHNLPGCQMVFIDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
           I      + K  +      ++  D+IL L E ++K         E+    +   + +  K
Sbjct: 66  IHRAKSKLNKYMVDVALSSIKEVDVILFLVEADAKPANQEGMILELLANADAPVLLVINK 125

Query: 329 SDLY---------STYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL          + Y   Y       +S+ +G+G+E L+  +   +       P  I +
Sbjct: 126 IDLVAKEALLERIAAYAALYPFREIVPVSALSGDGVERLVEVVHGFIPAGPPYFPDDILT 185

Query: 376 HKRHLYHLSQTVR-YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQ 427
                + +++ +R  +   + +E    + ++ E+ +  +  L  I   ++VE+
Sbjct: 186 DLPERFIVAEMIREKIFRLTHDEVPYSVAVVVESFKERADGLVSIAAAINVER 238


>gi|257055518|ref|YP_003133350.1| GTP-binding protein EngA [Saccharomonospora viridis DSM 43017]
 gi|256585390|gb|ACU96523.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Saccharomonospora viridis DSM 43017]
          Length = 470

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ ++G  N GKSSL N L  +  A+V  + GTT D +   ++L+G L +  DTAG+R  
Sbjct: 209 RVALVGKPNVGKSSLLNKLTGEQRAVVDSVAGTTVDPVDSLVELDGQLWRFIDTAGLRKR 268

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +T    E     RT   ++ A+++++L
Sbjct: 269 VQTASGTEYYASLRTKNAIDAAEVVIVL 296



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD ++ D    G    + DT G
Sbjct: 36  VAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRISYDATWRGRRFTLVDTGG 90


>gi|159037544|ref|YP_001536797.1| small GTP-binding protein [Salinispora arenicola CNS-205]
 gi|189037157|sp|A8LYU3|DER_SALAI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157916379|gb|ABV97806.1| small GTP-binding protein [Salinispora arenicola CNS-205]
          Length = 467

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N L  +  A+V D+PG TRD +  D    G    + DT G
Sbjct: 27  VAVVGRPNVGKSTLVNRLIGRRQAVVEDVPGVTRDRVPYDAQWNGRQFAVVDTGG 81



 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   ++ ++G  N GKSSL N  + +  A+V  + GTT D +   +++ G   ++ DTAG
Sbjct: 196 RGPRRVALVGRPNVGKSSLLNRFSGEVRAVVDAVAGTTVDPVDSLVEIGGEAWQLVDTAG 255

Query: 277 IRE 279
           +R+
Sbjct: 256 LRK 258


>gi|78223517|ref|YP_385264.1| GTP-binding protein EngA [Geobacter metallireducens GS-15]
 gi|123571482|sp|Q39T85|DER_GEOMG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78194772|gb|ABB32539.1| GTP-binding protein Era, putative [Geobacter metallireducens GS-15]
          Length = 439

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I ++G  N GKSSL N L   +  +    PGTTRD +            + DTAGIR  
Sbjct: 177 RIAVVGRPNVGKSSLVNRLLGFERVVANPTPGTTRDSVDTLFACNKKRYLLIDTAGIRRK 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            +T   +EK  +  +   +E AD++L++  IN+++ ++
Sbjct: 237 GKTTQKLEKYSVVDSLRSIERADVVLII--INAEEGVT 272



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-LTIDLDLEGYLVKISDTAGIRE- 279
           + I+G  N GKS+LFN L  +  AIV D+PG TRD         E   + I DT G    
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGRRKAIVDDMPGVTRDRNYETVTRFEAPFILI-DTGGFEPV 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           ++D + ++  +++ L +E AD+I+ L
Sbjct: 64  SEDRLLQQMREQSQLAMEEADVIIFL 89


>gi|170761539|ref|YP_001788258.1| GTP-binding protein Era [Clostridium botulinum A3 str. Loch Maree]
 gi|226741201|sp|B1KZM3|ERA_CLOBM RecName: Full=GTPase Era
 gi|169408528|gb|ACA56939.1| GTP-binding protein Era [Clostridium botulinum A3 str. Loch Maree]
          Length = 296

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ + I+G  N GKS+L NA+ K+ ++IV+  P TTR+ +   L  + Y +   DT
Sbjct: 1   MFKSGF-VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +K     +++ DL+L L
Sbjct: 60  PGIHKPKHKLGEYMVKSASDAMKDVDLVLFL 90


>gi|170754569|ref|YP_001782578.1| GTP-binding protein Era [Clostridium botulinum B1 str. Okra]
 gi|226741200|sp|B1ILK9|ERA_CLOBK RecName: Full=GTPase Era
 gi|169119781|gb|ACA43617.1| GTP-binding protein Era [Clostridium botulinum B1 str. Okra]
 gi|322807262|emb|CBZ04836.1| GTP-binding protein Era [Clostridium botulinum H04402 065]
          Length = 296

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ + I+G  N GKS+L NA+ K+ ++IV+  P TTR+ +   L  + Y +   DT
Sbjct: 1   MFKSGF-VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +K     +++ DL+L L
Sbjct: 60  PGIHKPKHKLGEYMVKSASDAMKDVDLVLFL 90


>gi|187778474|ref|ZP_02994947.1| hypothetical protein CLOSPO_02068 [Clostridium sporogenes ATCC
           15579]
 gi|226950371|ref|YP_002805462.1| GTP-binding protein Era [Clostridium botulinum A2 str. Kyoto]
 gi|254783292|sp|C1FVS6|ERA_CLOBJ RecName: Full=GTPase Era
 gi|187772099|gb|EDU35901.1| hypothetical protein CLOSPO_02068 [Clostridium sporogenes ATCC
           15579]
 gi|226842790|gb|ACO85456.1| GTP-binding protein Era [Clostridium botulinum A2 str. Kyoto]
          Length = 296

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ + I+G  N GKS+L NA+ K+ ++IV+  P TTR+ +   L  + Y +   DT
Sbjct: 1   MFKSGF-VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +K     +++ DL+L L
Sbjct: 60  PGIHKPKHKLGEYMVKSASDAMKDVDLVLFL 90


>gi|114775464|ref|ZP_01451032.1| GTP-binding protein Era [Mariprofundus ferrooxydans PV-1]
 gi|114553575|gb|EAU55956.1| GTP-binding protein Era [Mariprofundus ferrooxydans PV-1]
          Length = 301

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + +LG  N GKS+L N + +  VAIVT  P TTR  +L I  D    L+ + DT GI + 
Sbjct: 11  VALLGRPNVGKSTLMNHIIRAKVAIVTPKPQTTRHRILGIYNDDARQLIFV-DTPGIHKG 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
           D  + +  ++  +   E AD++ +++++ 
Sbjct: 70  DKQLNRNMVRIAYGAAEEADVLAIMQDVT 98


>gi|320528085|ref|ZP_08029250.1| ribosome biogenesis GTPase YqeH [Solobacterium moorei F0204]
 gi|320131433|gb|EFW23998.1| ribosome biogenesis GTPase YqeH [Solobacterium moorei F0204]
          Length = 349

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG +IV++G +N+GKS+L N L    V   +  PGTT D   +++D   Y+    DT GI
Sbjct: 152 NGRQIVVMGKANSGKSTLINNLMSTRVLTASRYPGTTLDFNELEIDGHTYI----DTPGI 207

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
              + +          +EV  ADL  ++   N K ++   +     F+G
Sbjct: 208 EIGNSM---------LMEVSEADLKTIMPSKNIKPQVFQLRGEQSFFVG 247


>gi|323356745|ref|YP_004223141.1| GTPase [Microbacterium testaceum StLB037]
 gi|323273116|dbj|BAJ73261.1| GTPase [Microbacterium testaceum StLB037]
          Length = 505

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 27/176 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L    V    A+   +  T R   T D    G +  ++DT G 
Sbjct: 289 VAIAGYTNAGKSSLLNRLTSAGVLVENALFATLDATVRRSETTD----GRVYTLTDTVGF 344

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDF---IFI 325
                    E  + T  EV +AD+IL +          ++ + +++      DF   I +
Sbjct: 345 VRNLPHQLVEAFRSTLEEVGDADVILHVVDASHPDPAAQLATVRDVMGDVEADFGHEIVV 404

Query: 326 GTKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             K+DL S            + H +SS TGEG++EL   I+  L     ++   +P
Sbjct: 405 FNKADLVSDDDRLVLRGLAPHAHFVSSRTGEGIDELRAAIEEALPRPAVEVQAVVP 460


>gi|225575179|ref|ZP_03783789.1| hypothetical protein RUMHYD_03268 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037587|gb|EEG47833.1| hypothetical protein RUMHYD_03268 [Blautia hydrogenotrophica DSM
           10507]
          Length = 402

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 10/155 (6%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDI 283
            G  NAGKSS+ NA+  +D+A+V+D+ GTT D ++  ++L     V I DT G+ +   +
Sbjct: 17  FGMRNAGKSSVVNAVTGQDLAVVSDVRGTTTDPVSKAMELLPLGPVVIIDTPGMDDEGAL 76

Query: 284 VE------KEGIKRTFLEVENADLILLLKEINSK-KEISFPKNIDFIFIGTKSDLYSTYT 336
            E      ++ + +T + V   D  + +KE + +   I   K I ++ +  K+DL     
Sbjct: 77  GELRVKKARQVLNKTDVAVLVVDAAVGMKEADQELLSIIKEKEIPYVVVYNKADLLKERQ 136

Query: 337 EEYDH--LISSFTGEGLEELINKIKSILSNKFKKL 369
            E +    +S+ TGE + EL  KI ++   +  KL
Sbjct: 137 PEGEGEIYVSAVTGEKIYELKEKIAALAVTEEPKL 171


>gi|154249358|ref|YP_001410183.1| GTP-binding protein Era [Fervidobacterium nodosum Rt17-B1]
 gi|154153294|gb|ABS60526.1| GTP-binding protein Era [Fervidobacterium nodosum Rt17-B1]
          Length = 301

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           ++I++G+    +G  N GKSS+ NA+ KK V IV++ P TTR+ + +    + + +   D
Sbjct: 2   QLIKSGFA-SFVGKPNVGKSSIINAIMKKKVVIVSEKPQTTRNRINVIYTTDDFQIVFVD 60

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           T GI +    + +  +K     ++N DL+L 
Sbjct: 61  TPGIHKPLHRLGEYMVKAAVQALKNVDLLLF 91


>gi|315185968|gb|EFU19732.1| GTP-binding proten HflX [Spirochaeta thermophila DSM 6578]
          Length = 408

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 19/175 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
           ++ ++G++NAGKSSLF  L  + V I  D P  T D  T    + G+  V +SDT G  +
Sbjct: 199 RVSLVGYTNAGKSSLFTRLTGQAVRI-QDRPFVTLDTTTRTCLIPGWGRVVVSDTVGFIQ 257

Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF---PKNIDFIFIGT 327
                  +    T  EV +A L+L         LL  +++ +E+       +I  I +  
Sbjct: 258 HLPHTLVDAFHATLEEVRDAHLLLEVVDLSSPNLLLHLSTTEEVLTEIGAHHIPRIRVYN 317

Query: 328 KSDLYSTY-----TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           K D  S +     +   + L+S+ TGEG+E L++ I   +   +      +P H+
Sbjct: 318 KVDRSSPHPLLPPSNHPEILVSAKTGEGIEGLLSLIVREMERHYPIETLELPYHR 372


>gi|294101756|ref|YP_003553614.1| GTP-binding protein Era [Aminobacterium colombiense DSM 12261]
 gi|293616736|gb|ADE56890.1| GTP-binding protein Era [Aminobacterium colombiense DSM 12261]
          Length = 308

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +    V+IV++ P TTR+ +    +     +  +DT GI    
Sbjct: 13  VPIVGRPNVGKSSLLNNILAYKVSIVSEKPQTTRNAIHGIYNEPEMQIVFTDTPGIHRPR 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
             + +  +K     +ENADLIL + E++
Sbjct: 73  HKLGEALVKAAVRSLENADLILYVVEVD 100


>gi|312115947|ref|YP_004013543.1| GTP-binding protein Era [Rhodomicrobium vannielii ATCC 17100]
 gi|311221076|gb|ADP72444.1| GTP-binding protein Era [Rhodomicrobium vannielii ATCC 17100]
          Length = 364

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 34/183 (18%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R G+  VI G  NAGKS+L NAL    V+IVT    TTR  V  I LD E  +V + DT 
Sbjct: 70  RCGFAAVI-GAPNAGKSTLVNALVGAKVSIVTHKAQTTRTRVRGIALDGEAQIV-LVDTP 127

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP-----K 318
           GI      +++  ++  + E   AD+ +L+ +            +N    +  P      
Sbjct: 128 GIFAPKRRLDRAMVETAWTEAREADVAVLVVDAARGFDDTVDPIVNEAANLKIPLILALN 187

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
            +D I    K  L +   E  + L       IS+ +G+G+E+L    +  L+ +    P+
Sbjct: 188 KVDKIH---KEKLLALAGEASERLKLESLFMISALSGDGVEDL----RGFLATRMPYGPW 240

Query: 372 SIP 374
             P
Sbjct: 241 LFP 243


>gi|225848212|ref|YP_002728375.1| ribosome biogenesis GTP-binding protein YsxC [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644647|gb|ACN99697.1| ribosome biogenesis GTP-binding protein YsxC [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 194

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT--AGIRE 279
           + ++G SN GKSSL NA+ K+ VA V+  PG TR +    L+ + Y V +     A + +
Sbjct: 26  VAVVGRSNVGKSSLINAIFKRSVAKVSSTPGKTRLINFFTLNNDIYFVDLPGYGFASVSQ 85

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
            + +  ++ I+   L  EN  LI++L
Sbjct: 86  KERLSWQKMIENYLLNRENLKLIIML 111


>gi|183982543|ref|YP_001850834.1| GTP-binding protein, EngA [Mycobacterium marinum M]
 gi|238690962|sp|B2HRU9|DER_MYCMM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|183175869|gb|ACC40979.1| GTP-binding protein, EngA [Mycobacterium marinum M]
          Length = 469

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 26/167 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V DIPG TRD ++ D    G    + DT G     
Sbjct: 32  LAIVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDALWNGRRFVVQDTGGWEPDA 91

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
             +++   ++  + +  AD ++L+ +          +   I             K D   
Sbjct: 92  KGLQQLVAEQASVAMRTADAVVLVVDATVGATTADEAAARILLRSGKPVFLAANKVDSDK 151

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                  L+S    E  H IS+  G G+ +L++ +        KKLP
Sbjct: 152 AEADAATLWSMGLGE-PHAISAMHGRGVADLLDTV-------LKKLP 190



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N LA  + ++V D+ GTT D +   ++L G + +  DTAG+R 
Sbjct: 204 RVALVGKPNVGKSSLLNKLAGDERSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRR 262


>gi|237755489|ref|ZP_04584111.1| ribosome biogenesis GTP-binding protein YsxC [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692353|gb|EEP61339.1| ribosome biogenesis GTP-binding protein YsxC [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 197

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 34/135 (25%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR---------DVLTIDLDLEGYL 268
           N  +I I+G SN GKSSL NA+ K+ +A V+  PG TR         D+  +DL   G+ 
Sbjct: 23  NKPEIAIVGRSNVGKSSLINAIFKRSIAKVSATPGKTRLINFFLLNDDIYFVDLPGYGF- 81

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID------- 321
                 A +   +    K  I+   L  EN +LI++L +         P N+D       
Sbjct: 82  ------AAVSHKEKQNWKRMIEDYLLNRENLNLIIMLVDTRYP-----PTNLDVLMKEWL 130

Query: 322 ------FIFIGTKSD 330
                 +I +GTK D
Sbjct: 131 ESFEKPYIVVGTKID 145


>gi|313837161|gb|EFS74875.1| GTP-binding protein HflX [Propionibacterium acnes HL037PA2]
 gi|314927817|gb|EFS91648.1| GTP-binding protein HflX [Propionibacterium acnes HL044PA1]
 gi|314971934|gb|EFT16032.1| GTP-binding protein HflX [Propionibacterium acnes HL037PA3]
 gi|328907281|gb|EGG27047.1| GTP-binding protein HflX [Propionibacterium sp. P08]
          Length = 483

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 35/180 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + I+G++NAGKSSL N L +  V    A+   +  TTR   T D    G +  ++DT G 
Sbjct: 265 VAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRTTTSD----GRVYTLTDTVGF 320

Query: 277 IRE-TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEI-------SFPKN 319
           +R    D+V  E    T  E   AD++L          + ++++ + +       + P+ 
Sbjct: 321 VRHLPHDLV--EAFASTLEETAMADVLLHVVDAADPDPVGQVDAVRAVLSGIGASAIPEV 378

Query: 320 IDFIFIGTKSD-----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +    I   SD     L ST+ E Y  L+S+ TGEG +ELI  +++ L    + +   IP
Sbjct: 379 LVLNKIDRLSDDAIVALRSTFPEAY--LVSAHTGEGTDELIEAVEADLPVPSQCVDAVIP 436


>gi|153941135|ref|YP_001392222.1| GTP-binding protein Era [Clostridium botulinum F str. Langeland]
 gi|189037261|sp|A7GHG2|ERA_CLOBL RecName: Full=GTPase Era
 gi|152937031|gb|ABS42529.1| GTP-binding protein Era [Clostridium botulinum F str. Langeland]
 gi|295320220|gb|ADG00598.1| GTP-binding protein Era [Clostridium botulinum F str. 230613]
          Length = 296

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ + I+G  N GKS+L NA+ K+ ++IV+  P TTR+ +   L  + Y +   DT
Sbjct: 1   MFKSGF-VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +K     +++ DL+L L
Sbjct: 60  PGIHKPKHKLGEYMVKSASDAMKDVDLVLFL 90


>gi|16329800|ref|NP_440528.1| ferrous iron transport protein B [Synechocystis sp. PCC 6803]
 gi|2498379|sp|P73182|FEOB_SYNY3 RecName: Full=Ferrous iron transport protein B homolog
 gi|1652285|dbj|BAA17208.1| ferrous iron transport protein B [Synechocystis sp. PCC 6803]
          Length = 614

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++  +G  N GKS+ FN + K + AI  + PG T D+    + L+G L++  D  GI + 
Sbjct: 20  RVAFIGQPNTGKSTFFNRITKANAAI-ANWPGLTVDLFRAVVPLQGELIEFVDLPGIYDL 78

Query: 281 DDIVEKEGIKRTFLE 295
           +   E E + + FL 
Sbjct: 79  NGFSEDERVVQRFLA 93


>gi|282857683|ref|ZP_06266893.1| small GTP-binding protein [Pyramidobacter piscolens W5455]
 gi|282584468|gb|EFB89826.1| small GTP-binding protein [Pyramidobacter piscolens W5455]
          Length = 403

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276
           I I G  N+GKSSL NALA +  +IV+D+PGTT D +   ++L G    +  DTAG
Sbjct: 14  IGIFGRRNSGKSSLVNALAGQAASIVSDVPGTTADPVYKAMELRGVGPAVLIDTAG 69


>gi|213966005|ref|ZP_03394195.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium
           amycolatum SK46]
 gi|213951419|gb|EEB62811.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium
           amycolatum SK46]
          Length = 773

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 58/98 (59%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N L+ ++ A+V+++ GTT D +   + ++  L +  DTAGIR+ 
Sbjct: 513 RVALVGKPNVGKSSLLNKLSGENRAVVSNVAGTTVDPVDSLVQMDETLWRFVDTAGIRKK 572

Query: 281 DDIVEKE---GIKRTFLEVENADLILLLKEINSKKEIS 315
               +        RT   ++NA++++ L  +++ ++I+
Sbjct: 573 TKTAKGHEFYASLRTRSTIDNAEVVIFL--VDASEQIT 608



 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++ N    +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 341 VAIVGRPNVGKSTMVNRFIGRREAVVEDFPGVTRDRISYLGEWGGRRFWVQDTGGWDPDA 400

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++    +E AD+I+++
Sbjct: 401 KGMHAAIARQAETAMETADVIVMV 424


>gi|114794390|pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
           Complex With Gdp
          Length = 436

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL 304
           +    +  ++  +  + AD+I+ 
Sbjct: 66  EPFLAQIRQQAEIAXDEADVIIF 88



 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSSL NA   ++  IV+++ GTTRD +            I DTAG R+   +
Sbjct: 180 LIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGXRKKGKV 239

Query: 284 ---VEKEGIKRTFLEVENADLILLL 305
               EK  + R    ++ ++++ ++
Sbjct: 240 YETTEKYSVLRALKAIDRSEVVAVV 264


>gi|222523307|ref|YP_002567777.1| GTP-binding protein Era [Chloroflexus sp. Y-400-fl]
 gi|222447186|gb|ACM51452.1| GTP-binding protein Era [Chloroflexus sp. Y-400-fl]
          Length = 469

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL  + VAIV+  P TTR  +   L   G  +   DT G
Sbjct: 175 RSGF-VALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTPG 233

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           I E    + K  ++     + NAD+I  + +I+ 
Sbjct: 234 IHEPSHRLGKLMVELAERTLPNADVICFMVDISQ 267


>gi|114567436|ref|YP_754590.1| GTPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114338371|gb|ABI69219.1| GTPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 375

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 40/177 (22%)

Query: 217 RNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGT--------TRDVLTIDLDLEG- 266
           R GY+++ ++G++NAGKSSLFNAL +  VA  +  P          T D  T  + L+  
Sbjct: 204 RAGYQVISLVGYTNAGKSSLFNALCQ--VAHSSGQPQVEANRRLFQTLDTTTRKIKLDSH 261

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-------------------LLKE 307
           Y V I+DT G  +          + T  E   ADL+L                   +L+E
Sbjct: 262 YEVLITDTVGFIQNLPHHLVAAFRSTLEEAVAADLLLHVVDLADPAYLDKIKVVEGVLEE 321

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYT--EEYDHLISSFTGEGLEELINKIKSIL 362
           + ++KE   P     +F   K DL +  +  +   + +S+ TG+G+EEL+ +IK+ L
Sbjct: 322 LGAEKERIMP-----VF--NKVDLLAGISPIQAPPNYVSARTGQGIEELLGQIKNRL 371


>gi|302335754|ref|YP_003800961.1| GTP-binding protein Era [Olsenella uli DSM 7084]
 gi|301319594|gb|ADK68081.1| GTP-binding protein Era [Olsenella uli DSM 7084]
          Length = 312

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  + GKS+L NA  K  +AI + +  TTR  +   ++ EG  + I DT G
Sbjct: 18  RSGF-VALVGRPSVGKSTLLNACFKDKIAITSPVAQTTRRRMRATINAEGSQLVIVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           + +  D + KE  K    E+ + D +  L
Sbjct: 77  LHKPKDALGKELNKVALGELADVDAVAFL 105


>gi|163845608|ref|YP_001633652.1| GTP-binding protein Era [Chloroflexus aurantiacus J-10-fl]
 gi|163666897|gb|ABY33263.1| GTP-binding protein Era [Chloroflexus aurantiacus J-10-fl]
          Length = 469

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL  + VAIV+  P TTR  +   L   G  +   DT G
Sbjct: 175 RSGF-VALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTPG 233

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           I E    + K  ++     + NAD+I  + +I+ 
Sbjct: 234 IHEPSHRLGKLMVELAERTLPNADVICFMVDISQ 267


>gi|313905112|ref|ZP_07838481.1| small GTP-binding protein [Eubacterium cellulosolvens 6]
 gi|313470015|gb|EFR65348.1| small GTP-binding protein [Eubacterium cellulosolvens 6]
          Length = 401

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  NAGKS+L NAL  ++V+IV+D  GTT DV+   +++ G       DTAG
Sbjct: 12  NRTHIGLFGRMNAGKSTLLNALTSQEVSIVSDRAGTTTDVVKKPMEIHGIGACTFLDTAG 71

Query: 277 IRETDDI 283
           I ++ ++
Sbjct: 72  IDDSGEL 78


>gi|168181051|ref|ZP_02615715.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
 gi|226951037|ref|YP_002806128.1| GTP-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|182668048|gb|EDT80027.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
 gi|226843593|gb|ACO86259.1| GTP-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 399

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 16/126 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I  +G +N+GKSSL NA+  +D++IV+ I GTT D ++  ++L     V  +DTAG
Sbjct: 8   NRIHITFIGKTNSGKSSLMNAIIGQDISIVSPIEGTTTDPVSKSMELIPLGPVLFTDTAG 67

Query: 277 IRETDDI--VEKEGIKRTFLEVENA---------DLILLLKEINSKKEISFPKNIDFIFI 325
           + +  ++  V  E    T L+ + A         D+ L  K IN  KE    +NI +I +
Sbjct: 68  LEDNTELGKVRIEKTLNTLLKTDFAIYVMSAKDIDINLYKKTINKFKE----QNISYITV 123

Query: 326 GTKSDL 331
             K D+
Sbjct: 124 INKMDI 129


>gi|82595366|ref|XP_725819.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480965|gb|EAA17384.1| GTP binding protein-related [Plasmodium yoelii yoelii]
          Length = 853

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK--DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +IIRN   + I+G  N GKS++FN L +K  + +IV D P +TRD      + +GY  ++
Sbjct: 262 KIIRNLPLVSIIGRPNVGKSTIFNRLTRKFQEGSIVLDKP-STRDKFYGKSEWDGYRFEV 320

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            DT G+   D+   KE   +  L +E + ++L +
Sbjct: 321 VDTGGLIFEDENFSKEIRDQILLALEESSVVLFV 354



 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG----YLVKIS 272
           +N   I  +G  N GKSS+ N +   +  IV+ I GTT D  +ID+ ++G     + ++ 
Sbjct: 542 KNTINISFIGKPNTGKSSILNKILNCNRFIVSPIAGTTID--SIDVLVKGKNDKRMYRLI 599

Query: 273 DTAGIRE 279
           DTAGI++
Sbjct: 600 DTAGIQK 606


>gi|91977066|ref|YP_569725.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris
           BisB5]
 gi|91683522|gb|ABE39824.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris
           BisB5]
          Length = 434

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 7/144 (4%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y++V L G++NAGKS+LFN L + DV    D+   T D     L L  G    +SDT
Sbjct: 198 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRALSLPHGGKAMLSDT 256

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLY 332
            G             + T  EV  ADLIL +++I  +   +  +++D +   +G ++D  
Sbjct: 257 VGFISNLPTQLVAAFRATLEEVLEADLILHVRDIAHEDAEAQDRDVDAVLRQLGVEAD-- 314

Query: 333 STYTEEYDHLISSFTGEGLEELIN 356
           S    E  + I  F  E LEEL N
Sbjct: 315 SGRILEIWNKIDRFEPEQLEELRN 338


>gi|67923219|ref|ZP_00516706.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Crocosphaera watsonii WH 8501]
 gi|67854950|gb|EAM50222.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Crocosphaera watsonii WH 8501]
          Length = 314

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 22/157 (14%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKS+L N L  + +AI + +  TTR+ L   L  E   +   DT GI +    
Sbjct: 27  IIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLRGILTTEKAQIIFVDTPGIHKPHHS 86

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNID-FIFIG-TKSDL---- 331
           + K  +K     +   D+ILL+ + ++K        I   K ++  I +G  KSD     
Sbjct: 87  LGKIIVKNAKTAINAVDIILLVVDSSTKSGGGDRYIIDLLKTVNQPIILGLNKSDQQPEN 146

Query: 332 -------YSTYTEEYDHLI---SSFTGEGLEELINKI 358
                  Y++  ++Y+  I   S+ TG+GLE L N +
Sbjct: 147 YQEIDESYASLIQDYNWPILKFSALTGDGLENLQNSL 183


>gi|312134392|ref|YP_004001730.1| small gtp-binding protein [Caldicellulosiruptor owensensis OL]
 gi|311774443|gb|ADQ03930.1| small GTP-binding protein [Caldicellulosiruptor owensensis OL]
          Length = 403

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 8/88 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I I G  NAGKSSL NA+  + +AIV++ PGTT D +   +++   G +V I DTAGI  
Sbjct: 12  IAIFGKRNAGKSSLINAITNQPIAIVSETPGTTTDPVYKSMEILPLGPVVLI-DTAGI-- 68

Query: 280 TDDIVE--KEGIKRTFLEVENADLILLL 305
            DD+ E  K  +++T   +   D+ +L+
Sbjct: 69  -DDVGELGKLRVEKTLEVLNKTDIAILV 95


>gi|157804058|ref|YP_001492607.1| GTP-binding protein EngA [Rickettsia canadensis str. McKiel]
 gi|166225851|sp|A8EZN9|DER_RICCK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157785321|gb|ABV73822.1| GTP-binding protein EngA [Rickettsia canadensis str. McKiel]
          Length = 447

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 47/89 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV ++PG TRD    D  +      + DT G+ E  
Sbjct: 6   IALVGRPNVGKSTLFNRLSIRKKAIVHNLPGVTRDRKYTDGKIGSCEFLLIDTPGLEENP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + +    +++T   +  ADLI  + +  S
Sbjct: 66  NSMSVRLMEQTTKAILEADLICFMVDCRS 94



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IVI G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K+ DTAG+R+ 
Sbjct: 181 QIVISGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240

Query: 281 DDIVE 285
             I E
Sbjct: 241 STITE 245


>gi|78212431|ref|YP_381210.1| GTP-binding protein Era [Synechococcus sp. CC9605]
 gi|78196890|gb|ABB34655.1| GTP-binding protein Era [Synechococcus sp. CC9605]
          Length = 311

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L E  R+G+ I ++G  N GKS+L N L  + VAI + +  TTR+ L   L  E   + +
Sbjct: 6   LPEDYRSGF-IALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAILTTEVAQMVL 64

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            DT GI +   ++ +  +K     +   DL++LL E
Sbjct: 65  VDTPGIHKPHHLLGERLVKSARSAIGEVDLVVLLLE 100


>gi|312066916|ref|XP_003136497.1| hypothetical protein LOAG_00909 [Loa loa]
 gi|307768339|gb|EFO27573.1| hypothetical protein LOAG_00909 [Loa loa]
          Length = 578

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ I+G+ N GKSS+ N+L +K V  V  +PG TR V  +DLD     +++ D+ 
Sbjct: 260 IKTSIRVGIVGYPNVGKSSVINSLKRKRVCDVGAVPGITRQVQEVDLDKH---IRLLDSP 316

Query: 276 GI 277
           G+
Sbjct: 317 GV 318


>gi|313672925|ref|YP_004051036.1| gtp-binding protein era [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939681|gb|ADR18873.1| GTP-binding protein Era [Calditerrivibrio nitroreducens DSM 19672]
          Length = 294

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  NAGKS+L NA+  + V+I++  P TTR  +    + +   +   DT GI    D 
Sbjct: 10  IIGRPNAGKSTLLNAILGEKVSIISSKPNTTRTQIRGIYNSKDAQIIFIDTPGIHNAKDN 69

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKK 312
           + K  +++ F  ++  D++  L E   KK
Sbjct: 70  INKLMVEKAFETIKMVDIVYFLVEPGEKK 98


>gi|125972566|ref|YP_001036476.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405]
 gi|256005128|ref|ZP_05430097.1| small GTP-binding protein [Clostridium thermocellum DSM 2360]
 gi|281416754|ref|ZP_06247774.1| small GTP-binding protein [Clostridium thermocellum JW20]
 gi|125712791|gb|ABN51283.1| iron-only hydrogenase maturation protein HydF [Clostridium
           thermocellum ATCC 27405]
 gi|255990875|gb|EEU00988.1| small GTP-binding protein [Clostridium thermocellum DSM 2360]
 gi|281408156|gb|EFB38414.1| small GTP-binding protein [Clostridium thermocellum JW20]
 gi|316941196|gb|ADU75230.1| small GTP-binding protein [Clostridium thermocellum DSM 1313]
          Length = 400

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 12/155 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKSS+ NA+  +++AIV+D+ GTT D +   ++L     V I DT G
Sbjct: 10  NRLHIGFFGKRNAGKSSVVNAVTGQNLAIVSDVKGTTTDPVYKAMELLPLGPVVIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
           I +   + E   +KR+   +   D+ +L+ +    K        E+   K+I ++ +  K
Sbjct: 70  IDDEGTLGEMR-VKRSRQVLNKTDIAVLVIDATCGKSEDDEKLIELFEKKDIKYVVVYNK 128

Query: 329 SDL--YSTYTEEYDHLISSFTGEGLEELINKIKSI 361
           +DL  +     + +  +S+ TG  + +L  KI S+
Sbjct: 129 ADLEGHEETVGDNEIYVSAKTGYNINKLKEKIASL 163


>gi|228470301|ref|ZP_04055205.1| small GTP-binding protein [Porphyromonas uenonis 60-3]
 gi|228308044|gb|EEK16919.1| small GTP-binding protein [Porphyromonas uenonis 60-3]
          Length = 398

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 25/171 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR- 278
           +IV++G  N+GKS+L+N L +++ ++V+D  GTT D +    +L     V + DT G+  
Sbjct: 12  RIVLVGQVNSGKSTLYNRLLRQERSLVSDQAGTTTDSVEKLFELPSVGPVLLVDTPGLAD 71

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSDL 331
           ET    E++ + +  L   +ADLIL L  ++ ++ +  P        ++  + I  ++DL
Sbjct: 72  ETPLGAERQRVTQHAL--SSADLILYL--LSCEESLDTPIITALRKASVPTLPIIARADL 127

Query: 332 --YSTYTEEYDHLISSFTG----------EGLEELINKIKSILSNKFKKLP 370
              S++ E  + ++  F            + L+ L+  IK  LSN+ +  P
Sbjct: 128 PEQSSWLERQEEIMRCFGHTPLTLRQDDEKSLDTLLEAIKRTLSNESEPAP 178


>gi|188589655|ref|YP_001921707.1| ferrous iron transport protein B [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499936|gb|ACD53072.1| ferrous iron transport protein B [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 587

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 9/84 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279
           I +LG+ N GK++LFNAL   +   V + PG T +        EGY+  VKI D  GI  
Sbjct: 4   IALLGNPNVGKTTLFNALTGSN-QYVGNWPGVTVE------KKEGYINNVKIVDLPGIYA 56

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
            D    +E + + FL+    DLIL
Sbjct: 57  MDTFSNEEKVAKEFLQNGQVDLIL 80


>gi|187934064|ref|YP_001886748.1| ferrous iron transport protein B [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722217|gb|ACD23438.1| ferrous iron transport protein B [Clostridium botulinum B str.
           Eklund 17B]
          Length = 587

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 9/84 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279
           I +LG+ N GK++LFNAL   +   V + PG T +        EGY+  VKI D  GI  
Sbjct: 4   IALLGNPNVGKTTLFNALTGSN-QYVGNWPGVTVE------KKEGYINDVKIVDLPGIYA 56

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
            D    +E + + FL+    DLIL
Sbjct: 57  MDTFSNEEKVAKEFLQNGQVDLIL 80


>gi|317485139|ref|ZP_07944021.1| small GTP-binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316923674|gb|EFV44878.1| small GTP-binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 432

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 4/90 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           I + G  N GKSSL NALA + V+IV++ PGTT D +  T++    G +V + DTAG+ +
Sbjct: 12  IGLFGRRNVGKSSLLNALAAQSVSIVSNTPGTTTDPVEKTLEFAPLGPVVFL-DTAGLDD 70

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN 309
             ++  +   +RT   +   D+ L++   N
Sbjct: 71  EGELGTQR-TERTLAVLPRTDMALVVTAEN 99


>gi|251779526|ref|ZP_04822446.1| ferrous iron transport protein B [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083841|gb|EES49731.1| ferrous iron transport protein B [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 587

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 9/84 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279
           I +LG+ N GK++LFNAL   +   V + PG T +        EGY+  VKI D  GI  
Sbjct: 4   IALLGNPNVGKTTLFNALTGSN-QYVGNWPGVTVE------KKEGYINDVKIVDLPGIYA 56

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
            D    +E + + FL+    DLIL
Sbjct: 57  MDTFSNEEKVAKEFLQNGQVDLIL 80


>gi|189425186|ref|YP_001952363.1| GTP-binding protein Era [Geobacter lovleyi SZ]
 gi|259645944|sp|B3E422|ERA_GEOLS RecName: Full=GTPase Era
 gi|189421445|gb|ACD95843.1| GTP-binding protein Era [Geobacter lovleyi SZ]
          Length = 296

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 20/156 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKS+L N +  + +  V+D P TTR+V+   L  E   +   DT GI      
Sbjct: 13  IIGRPNVGKSTLLNRILGEKIVAVSDKPQTTRNVIRGILSDETSQIVFVDTPGIHTARTR 72

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI-------------DFIFIGTKSD 330
           + +  +      V   DL+LL+ +   K E +F K+I                 +  K  
Sbjct: 73  INRAMVDAAMTVVTGIDLMLLVVDATQKIEETFIKDICSKAGAPIYLVLNKIDQVTPKEK 132

Query: 331 LYST---YTEEYDH----LISSFTGEGLEELINKIK 359
           L++    YT  YD      IS+ +G  +E L++ ++
Sbjct: 133 LFTVIEGYTRLYDFPEIIPISAQSGSNIERLVDLVR 168


>gi|152967059|ref|YP_001362843.1| GTP-binding protein EngA [Kineococcus radiotolerans SRS30216]
 gi|151361576|gb|ABS04579.1| small GTP-binding protein [Kineococcus radiotolerans SRS30216]
          Length = 496

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ +LG  N GKSS+ N LA  +  +V    GTTRD +   ++L G   +  DTAGIR
Sbjct: 237 RVALLGRPNVGKSSMLNKLAGSERVVVHPTAGTTRDPVDEIIELGGRTWRFVDTAGIR 294



 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +    +  G    + DT G     
Sbjct: 62  LAVVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVAYPANWAGRDFTLVDTGGWEAKA 121

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +      +  L +E AD ++ +
Sbjct: 122 EGLNLAVADQAELAIELADAVMFV 145


>gi|307292854|ref|ZP_07572700.1| GTP-binding protein Era [Sphingobium chlorophenolicum L-1]
 gi|306880920|gb|EFN12136.1| GTP-binding protein Era [Sphingobium chlorophenolicum L-1]
          Length = 302

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 27/175 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  NAGKS+L NAL  + VAI +    TTR  V+ + ++ +  +V + DT GI   
Sbjct: 13  IAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQMVLV-DTPGIFAP 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE----INSKKE------ISFPKNIDFIF----IG 326
              +++  ++  +   + ADLI L+ +    + +K E       + P+    I     I 
Sbjct: 72  KRRLDRAMVQAAWGGAQGADLIALVVDGKAGLGAKMEPIVSALAARPEKKWLILNKVDIA 131

Query: 327 TKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            K  L       Y+ L       +S+ TG+GL EL    K+  +    + P+  P
Sbjct: 132 IKEKLLVHTQRLYEQLDIAETFFVSAATGDGLPEL----KTAFARAMPEGPWHFP 182


>gi|308176963|ref|YP_003916369.1| GTP-binding protein EngA [Arthrobacter arilaitensis Re117]
 gi|307744426|emb|CBT75398.1| GTP-binding protein EngA [Arthrobacter arilaitensis Re117]
          Length = 510

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 8/115 (6%)

Query: 208 SQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           +    G +I +G   ++ ++G  N GKSSL N +A  +  +V +  GTTRD +   ++L 
Sbjct: 234 AHSAFGGMIPSGGPRRVALIGRPNVGKSSLLNKVAGSERVVVDEYAGTTRDPVDELVELG 293

Query: 266 GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLL---KEINSKKEI 314
           G + +  DTAGIR    +    +     RT   +E A++ ++L    EI S++++
Sbjct: 294 GEIWRFVDTAGIRRRQHMAVGSDYYASLRTQTALEKAEVAVILLAANEIISEQDV 348



 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 39/84 (46%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    I DT G     
Sbjct: 75  LAVIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYSAEWMGRPFTIVDTGGWEHDA 134

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +      +  +  + AD IL +
Sbjct: 135 KGIHASVADQAEIAADVADAILFV 158


>gi|253577825|ref|ZP_04855097.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850143|gb|EES78101.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 402

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 18/165 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I I G +N+GKSS  N  + + V+IV D+ GTT D +   +++   G  + I DTA
Sbjct: 12  NRLHIGIFGKTNSGKSSFINTFSGQKVSIVADVAGTTTDPVYKPMEIYPLGPCI-IIDTA 70

Query: 276 GIRETDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISF-----PKNIDFIFIGTKS 329
           G  +  ++     I++T L  +  +L I+L  E    +E+ +      +    I +  K+
Sbjct: 71  GFDDEGELGALR-IEKTSLAAQKTELAIILFCEDEMVQELKWYNYFKKRQTPVIPVLGKA 129

Query: 330 DLYSTYTEEY-DHLISSFTGEGL-------EELINKIKSILSNKF 366
           DLY+   +EY   +I   TGE +        E I K+K +L+ K 
Sbjct: 130 DLYTQEQKEYLIQMIQKNTGETVCPVSSETGEGIRKLKELLAEKI 174


>gi|289641297|ref|ZP_06473463.1| small GTP-binding protein [Frankia symbiont of Datisca glomerata]
 gi|289508895|gb|EFD29828.1| small GTP-binding protein [Frankia symbiont of Datisca glomerata]
          Length = 457

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ +LG  N GKSSL N LA    ++V D+ GTTRD +   + + G   K  DTAG+R 
Sbjct: 196 RVALLGKPNVGKSSLLNRLAGTQRSLVHDVAGTTRDPVDELVTVGGETWKFVDTAGLRR 254



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D    G    + DT G
Sbjct: 23  LAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDATWNGRRFVVVDTGG 77


>gi|7595274|gb|AAF64397.1|AF148553_1 hypothetical protein [Thiobacillus denitrificans]
          Length = 281

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 52/86 (60%), Gaps = 5/86 (5%)

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289
           S+L NAL  ++  I  D PGTTRD + ++ +  G    + DTAG+R    +   VEK  +
Sbjct: 1   STLVNALVGEERVIAFDQPGTTRDSIYVEFERGGKPYVLIDTAGVRRKGKVFETVEKFSV 60

Query: 290 KRTFLEVENADLILLLKEINSKKEIS 315
            +T   +E+A++++L+  +++++ IS
Sbjct: 61  IKTLQAIEDANVVVLV--LDARENIS 84


>gi|300825513|ref|ZP_07105577.1| small GTP-binding protein [Escherichia coli MS 119-7]
 gi|300522036|gb|EFK43105.1| small GTP-binding protein [Escherichia coli MS 119-7]
          Length = 290

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G  + I+D  G+ E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGCSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|51246230|ref|YP_066114.1| GTP-binding protein [Desulfotalea psychrophila LSv54]
 gi|50877267|emb|CAG37107.1| related to predicted GTP-binding protein [Desulfotalea psychrophila
           LSv54]
          Length = 415

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 17/146 (11%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDD 282
           I G +N GKS+  N L  +DVAI +  PGTT DV+   ++L     V + DTAG+ +   
Sbjct: 17  IFGRTNVGKSTFLNFLVDQDVAIASSQPGTTTDVVEKSMELLPLGPVVLHDTAGLDDESA 76

Query: 283 I--VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---IGTKSDLYSTYTE 337
           +  +  E  +  F  V   DL++LL + N   EI      +FI+   +G K  L    + 
Sbjct: 77  LGHLRTEKTRAVFARV---DLLILLIQPNQWGEIE-----EFIYQTALGKKKPLL-VVSS 127

Query: 338 EYDHLISSFTGEGLEELINKIKSILS 363
            YD  IS  + +   E+  +   +L+
Sbjct: 128 HYD--ISPLSPQFRAEMATRRLHLLT 151


>gi|238064002|ref|ZP_04608711.1| small GTP-binding protein [Micromonospora sp. ATCC 39149]
 gi|237885813|gb|EEP74641.1| small GTP-binding protein [Micromonospora sp. ATCC 39149]
          Length = 466

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V DIPG TRD +  D    G    + DT G
Sbjct: 26  VAVVGRPNVGKSTLVNRIIGRRQAVVEDIPGVTRDRVPYDAQWSGRAFTVVDTGG 80



 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 9/104 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   ++ ++G  N GKSSL N  + ++ A+V  + GTT D +   +++ G   ++ DTAG
Sbjct: 195 RGPRRVALVGRPNVGKSSLLNRFSGEERAVVDSVAGTTVDPVDSLVEIGGETWQLVDTAG 254

Query: 277 IRETDDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315
           +R+   + +  G +     RT   +E A++ ++L  ++S + IS
Sbjct: 255 LRKR--VGKASGTEYYASLRTASAIEAAEVAVVL--LDSSEPIS 294


>gi|332706767|ref|ZP_08426828.1| ferrous iron transporter FeoB [Lyngbya majuscula 3L]
 gi|332354651|gb|EGJ34130.1| ferrous iron transporter FeoB [Lyngbya majuscula 3L]
          Length = 617

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  N GKS+ FN +     A V + PG T D+L  ++ L G   +  D  GI + 
Sbjct: 20  RVALLGMPNTGKSTFFNRITGTS-AHVGNWPGITVDLLQANVQLNGEPTEFVDLPGIYDL 78

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +   + E I +TFLE    DL +++
Sbjct: 79  NGFSDDEKIVQTFLENFAVDLFIIV 103


>gi|227503688|ref|ZP_03933737.1| GTP-binding protein EngA [Corynebacterium accolens ATCC 49725]
 gi|227075724|gb|EEI13687.1| GTP-binding protein EngA [Corynebacterium accolens ATCC 49725]
          Length = 527

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N    +  A+V D PG TRD ++   D  G    + DT G     
Sbjct: 93  VAIVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVADWNGQRFIVQDTGGWDPNV 152

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +  +  ++  L ++ AD+I+++
Sbjct: 153 KGMHADIARQAELAMDTADVIVMV 176



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N L  ++ ++V ++ GTT D +   + L+  L K  DTAG+R+
Sbjct: 265 RVALVGRPNVGKSSLLNKLTSEERSVVDNVAGTTVDPVDSLVQLDEQLWKFIDTAGLRK 323


>gi|210621736|ref|ZP_03292785.1| hypothetical protein CLOHIR_00730 [Clostridium hiranonis DSM 13275]
 gi|210154618|gb|EEA85624.1| hypothetical protein CLOHIR_00730 [Clostridium hiranonis DSM 13275]
          Length = 657

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 10/85 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIR 278
           I +LG+ N GK+++FN L   +   V + PG T +        EG+L   +KI D  GI 
Sbjct: 4   IALLGNPNVGKTTVFNLLTGSN-QYVGNWPGVTIE------KKEGFLEDDIKIVDLPGIY 56

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
             D    +E + ++FLE E+ DLIL
Sbjct: 57  AMDTFSNEEKVSKSFLEKEDVDLIL 81


>gi|302866909|ref|YP_003835546.1| ribosome-associated GTPase EngA [Micromonospora aurantiaca ATCC
           27029]
 gi|315506749|ref|YP_004085636.1| ribosome-associated gtpase enga [Micromonospora sp. L5]
 gi|302569768|gb|ADL45970.1| ribosome-associated GTPase EngA [Micromonospora aurantiaca ATCC
           27029]
 gi|315413368|gb|ADU11485.1| ribosome-associated GTPase EngA [Micromonospora sp. L5]
          Length = 468

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V DIPG TRD +  D    G    + DT G
Sbjct: 28  VAVVGRPNVGKSTLVNRIIGRRQAVVEDIPGVTRDRVPYDAQWNGRAFTVVDTGG 82



 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 9/104 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   ++ ++G  N GKSSL N  + ++ A+V  + GTT D +   +++ G   ++ DTAG
Sbjct: 197 RGPRRVALVGRPNVGKSSLLNRFSGEERAVVDSVAGTTVDPVDSLVEIGGETWQLVDTAG 256

Query: 277 IRETDDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315
           +R+   + +  G +     RT   +E A++ ++L  I+S + IS
Sbjct: 257 LRKR--VGKASGTEYYASLRTASAIEAAEVAVVL--IDSSEVIS 296


>gi|120404249|ref|YP_954078.1| GTP-binding protein EngA [Mycobacterium vanbaalenii PYR-1]
 gi|166225829|sp|A1TA72|DER_MYCVP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|119957067|gb|ABM14072.1| small GTP-binding protein [Mycobacterium vanbaalenii PYR-1]
          Length = 470

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D    G    + DT G     
Sbjct: 34  VAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDASWSGQRFMVQDTGGWEPDA 93

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++   ++  + +  AD I+ +
Sbjct: 94  KGLQQLVAEQASVAMRTADAIIFV 117



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 38/59 (64%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N L+  + ++V D+ GTT D +   ++++G L +  DTAG+R 
Sbjct: 207 RVALVGKPNVGKSSLLNRLSGDERSVVHDVAGTTVDPVDSLIEMDGKLWRFVDTAGLRR 265


>gi|320106113|ref|YP_004181703.1| GTP-binding protein Era [Terriglobus saanensis SP1PR4]
 gi|319924634|gb|ADV81709.1| GTP-binding protein Era [Terriglobus saanensis SP1PR4]
          Length = 349

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 13/102 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE---------- 265
           +R+G+ + I+G  NAGKS+L NAL  + +AIVT  P TTR+ +   L+L           
Sbjct: 3   LRSGF-VSIVGRPNAGKSTLLNALLGEKIAIVTHKPQTTRNRILGVLELPIRKKAAKDPG 61

Query: 266 --GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
                V + DT G+ +    ++K  ++  +  +E+ D++L +
Sbjct: 62  RGAAQVVLVDTPGVHKPSSHLDKRMMQEVYDALESRDVVLFI 103


>gi|298372228|ref|ZP_06982218.1| GTP-binding protein [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275132|gb|EFI16683.1| GTP-binding protein [Bacteroidetes oral taxon 274 str. F0058]
          Length = 402

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280
           I ILG  N+GKSSL N +  +  A+V+D  GTT DV++  ++L G    +  DT G  + 
Sbjct: 14  ITILGRVNSGKSSLLNTITGQQSAVVSDTAGTTTDVVSKAMELRGIGACLFVDTPGF-DD 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
             I+ K+  ++    +E AD+ +L+
Sbjct: 73  RSILGKQRTEQIHKALERADIAILM 97


>gi|325280072|ref|YP_004252614.1| GTP-binding protein Era-like-protein [Odoribacter splanchnicus DSM
           20712]
 gi|324311881|gb|ADY32434.1| GTP-binding protein Era-like-protein [Odoribacter splanchnicus DSM
           20712]
          Length = 304

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 7/139 (5%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I+T    TTR  +   ++ + Y +  SDT G+ +    
Sbjct: 20  IVGNPNVGKSTLMNRLVGEKISIITSKSQTTRHRIKGIVNTDDYQIVFSDTPGVVKPSYK 79

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
           +++  ++ +   + +AD+IL + ++    E    KN+DFI    KSD+         + I
Sbjct: 80  MQEYMLEFSKSALVDADIILYVTDVVENIE----KNLDFIDKVNKSDIPVLLVI---NKI 132

Query: 344 SSFTGEGLEELINKIKSIL 362
              T E LE L +K KS++
Sbjct: 133 DLTTQEKLEALFDKWKSLI 151


>gi|118444403|ref|YP_877886.1| GTP-binding protein [Clostridium novyi NT]
 gi|118134859|gb|ABK61903.1| GTP-binding protein [Clostridium novyi NT]
          Length = 594

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 103/223 (46%), Gaps = 39/223 (17%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAK---------KDVAIVTDIPGTTRDVLTIDLDL-EGY 267
           N  KI ++G++NAGKS+L N L +         K+     D+   T DV T  L L +  
Sbjct: 362 NVPKISLVGYTNAGKSTLRNKLCEIASPKDVVDKETVFEADMLFATLDVTTRALVLPDNR 421

Query: 268 LVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI 325
           LV ++DT G IR+   D+V  E  K T  EV N+DL+L + + +SK      + ++F+  
Sbjct: 422 LVTLTDTVGFIRKLPHDLV--EAFKSTLEEVVNSDLLLHVVDSSSKDAYKQIEAVNFVLE 479

Query: 326 GTKS-----------------DLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSN 364
             +S                 +      E++++L    IS+     L+ L+N I + L N
Sbjct: 480 ELESINKPMILLLNKIDKADKEQLEGLKEKFNNLKVLEISAKDNLNLDTLLNDICTALPN 539

Query: 365 KFKKLPFSIP-SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
             KK+ F IP S    +  L +  + LE      KD G  IIA
Sbjct: 540 PLKKVEFLIPYSDSASVAMLHRNGKVLEEEY---KDNGTRIIA 579


>gi|289450697|ref|YP_003475263.1| GTP-binding protein Era [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289185244|gb|ADC91669.1| GTP-binding protein Era [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 563

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           ++I++G+ + I+G  NAGKS+L NA++ + +AIV+    TTR+ +    +  G  +   D
Sbjct: 257 QLIKSGF-VSIVGRPNAGKSTLLNAISGQHLAIVSRKAQTTRNNIRSIYNARGVQMIFID 315

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           T G+ E D  + K   +     + N+D++LL+
Sbjct: 316 TPGLHEPDTELGKYMQEAAKKALSNSDILLLM 347


>gi|172035490|ref|YP_001801991.1| GTP-binding protein, HSR1-related [Cyanothece sp. ATCC 51142]
 gi|57864828|gb|AAW57003.1| iron(II)transporter [Cyanothece sp. ATCC 51142]
 gi|171696944|gb|ACB49925.1| GTP-binding protein, HSR1-related [Cyanothece sp. ATCC 51142]
          Length = 208

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           QGK  E++  G  I ++G  N GKS LFN L       V++ PGTT +     + + G  
Sbjct: 30  QGKSPEVVSQG-TIALVGSPNVGKSLLFNVLTGA-YTTVSNYPGTTVEASRNYITIAGKT 87

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK 328
           + I DT G+     + E+E   R  L  E+ DL +    +   K +S   N+ F  + T+
Sbjct: 88  ITIIDTPGMYSLIPMTEEERFSRELLFKESLDLAV---HVIDAKNLSRMLNLTFQLMETQ 144


>gi|257463915|ref|ZP_05628301.1| GTP-binding protein [Fusobacterium sp. D12]
 gi|317061442|ref|ZP_07925927.1| GTP-binding protein [Fusobacterium sp. D12]
 gi|313687118|gb|EFS23953.1| GTP-binding protein [Fusobacterium sp. D12]
          Length = 400

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 75/141 (53%), Gaps = 24/141 (17%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKSSLFN L  +D ++V+   GTT D +   ++L GY  V++ DTAG
Sbjct: 9   NRKHIAFFGKRNAGKSSLFNLLLGEDFSLVSKQLGTTTDPVYKAMELVGYGPVRLIDTAG 68

Query: 277 IRETDDIVE--KEGIKRTFLEVENADLILLLKEINSKKEIS----------FPK-NIDFI 323
           +   DDI E  +  +K++   ++  D+ + +  ++S +E++          F + +I ++
Sbjct: 69  L---DDIGELGELRVKKSKEVLQKIDMAIYV--LDSSQEVTEEERKEAKRLFQRFHIPYV 123

Query: 324 FIGTKSD-----LYSTYTEEY 339
           F+  K D     L + + E+Y
Sbjct: 124 FVWNKRDMVGEILEAEWKEKY 144


>gi|254561470|ref|YP_003068565.1| GTP-binding protein [Methylobacterium extorquens DM4]
 gi|254268748|emb|CAX24709.1| GTP-binding protein [Methylobacterium extorquens DM4]
          Length = 326

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 32/191 (16%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +QG+  E  R G+ + ++G  NAGKS+L NAL    V+IV+    TTR  L   + +EG+
Sbjct: 23  AQGQPREETRAGF-VALIGVPNAGKSTLLNALVGAKVSIVSRKVQTTR-ALVRGIVMEGH 80

Query: 268 L-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------- 312
             + + DT GI      +++  +   +    +AD I LL  I+++K              
Sbjct: 81  AQIVLVDTPGIFAPKRRLDRAMVHSAWSGAADADAICLL--IDARKGVDEEVETILRRLP 138

Query: 313 EISFPK-----NIDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           E+  PK      ID I     +   + L +    E   LIS+  G+G+ +L    +  L+
Sbjct: 139 EVKRPKILILNKIDLIARERLLELVAKLNAMVPFEDTFLISALKGDGIADL----RKALA 194

Query: 364 NKFKKLPFSIP 374
            +    P+  P
Sbjct: 195 ARMPPSPWLYP 205


>gi|254818899|ref|ZP_05223900.1| GTP-binding protein EngA [Mycobacterium intracellulare ATCC 13950]
          Length = 466

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD ++ D    G    + DT G     
Sbjct: 32  VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDALWTGRRFVVQDTGGWEPDA 91

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKN-IDFIF 324
             +++   ++  + +  AD ++L+ +                + S K +    N +D   
Sbjct: 92  KGLQQLVAEQASVAMRTADAVILVVDAVVGATSADEAAARILLRSGKPVFLAANKVDSDK 151

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
               + +  +      H IS+  G G+ +L++++ + L
Sbjct: 152 AEADAAMLWSLGLGEPHAISAMHGRGVADLLDEVLAAL 189



 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA    ++V D+ GTT D +   + L   + +  DTAG+R
Sbjct: 204 RVALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIQLGDRVWRFVDTAGLR 261


>gi|327311446|ref|YP_004338343.1| small GTP-binding protein [Thermoproteus uzoniensis 768-20]
 gi|326947925|gb|AEA13031.1| small GTP-binding protein [Thermoproteus uzoniensis 768-20]
          Length = 400

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++V+ G+++ GK++LFN L  +    V   P  T D  +  + L G  + ++DT G  E 
Sbjct: 187 EVVLTGYTSVGKTTLFNRLTAEH-KYVDGRPFATLDTYSRRISLWGKEIVLTDTIGFIED 245

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST---YTE 337
              V  E    T  EV +ADL+LLL + +  +E  F + +      T  D+ ST   + E
Sbjct: 246 LPPVLIESFYSTLQEVADADLVLLLADASDDEE-EFARELQ-----TSIDVLSTIGVHKE 299

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKF 366
               ++S     GL EL+ K  +IL   F
Sbjct: 300 RVLPVLSKVDAVGLPELVRK-AAILRKHF 327


>gi|255325638|ref|ZP_05366735.1| ribosome-associated GTPase EngA [Corynebacterium tuberculostearicum
           SK141]
 gi|255297248|gb|EET76568.1| ribosome-associated GTPase EngA [Corynebacterium tuberculostearicum
           SK141]
          Length = 526

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 42/84 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N    +  A+V D PG TRD ++   D  G    + DT G     
Sbjct: 93  VAIVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRISYVADWNGQRFLVQDTGGWDPNV 152

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++  + +E AD+I+++
Sbjct: 153 KGIHGAIARQAEVAMETADVIVMV 176



 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N L  ++ ++V ++ GTT D +   + L+  L K  DTAG+R+
Sbjct: 265 RVALVGKPNVGKSSLLNKLTSEERSVVDNVAGTTVDPVDSLVQLDEQLWKFIDTAGLRK 323


>gi|113476532|ref|YP_722593.1| GTP-binding protein Era [Trichodesmium erythraeum IMS101]
 gi|110167580|gb|ABG52120.1| GTP-binding protein Era [Trichodesmium erythraeum IMS101]
          Length = 310

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           GYK   + I+G  N GKS+L N L  + VAI + +  TTR+ L   L  +   +   DT 
Sbjct: 15  GYKSGFVGIIGRPNVGKSTLMNQLVGQKVAITSPVAQTTRNRLRGILTTQAAQIIFVDTP 74

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI +    + K  ++   + +++ DL+LL+
Sbjct: 75  GIHKPQHQLGKVLVQNAKVAIQSVDLVLLI 104


>gi|58699336|ref|ZP_00374112.1| GTP-binding protein Era [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58534148|gb|EAL58371.1| GTP-binding protein Era [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 128

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 5/102 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G  NAGKS+L N++  K +AIVT    TTR  +          V  +D+ GI   +
Sbjct: 9   VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQVVFTDSPGIFSAE 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
             +EK  +K  +  V+++D+ LLL +++     ++ KNI+ I
Sbjct: 69  TKLEKALVKSAWSAVKDSDITLLLVDVS-----NYLKNIERI 105


>gi|70931024|ref|XP_737292.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56512559|emb|CAH85924.1| hypothetical protein PC301755.00.0 [Plasmodium chabaudi chabaudi]
          Length = 113

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
           NKIK  LS+  K + F +P  +RH  +L +++ +L     N      DIIAE ++LA   
Sbjct: 31  NKIKKNLSSDNKNIYF-LP-FERHKIYLKESLTHLSFVQKNINLVDFDIIAEEIKLAVKP 88

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           L +I G +  EQ+L  I   FCIGK
Sbjct: 89  LHEIIGKISNEQILSNILDTFCIGK 113


>gi|210633084|ref|ZP_03297651.1| hypothetical protein COLSTE_01559 [Collinsella stercoris DSM 13279]
 gi|210159238|gb|EEA90209.1| hypothetical protein COLSTE_01559 [Collinsella stercoris DSM 13279]
          Length = 429

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 24/204 (11%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSS 234
           F + E       + + N I  L+ +++    +  +    R G   ++I + G++NAGKSS
Sbjct: 165 FGQGESQLEVDRRMIRNRIASLRKELAVVERRRAVQSKSRTGSLAFRIALAGYTNAGKSS 224

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTF 293
           L N L   DV +  D    T D  T   +L  G  + I+DT G  +       E  K T 
Sbjct: 225 LLNRLTGSDV-LAQDKLFATLDPTTRSYELPGGRAITITDTVGFIQKLPHGLVEAFKSTL 283

Query: 294 LEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT----------EEYDHL- 342
            EV +ADLIL + +++ +      +++D +     ++     T           E + L 
Sbjct: 284 SEVRDADLILKVVDVSDEDRDRQIESVDRVLCDVHAESQRALTVYNKIDLLDPSEVERLK 343

Query: 343 --------ISSFTGEGLEELINKI 358
                    S+ TG G+EEL  +I
Sbjct: 344 RRHPDALFFSARTGAGIEELRQRI 367


>gi|169837457|ref|ZP_02870645.1| tRNA modification GTPase TrmE [candidate division TM7 single-cell
           isolate TM7a]
          Length = 58

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 30/40 (75%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           ++ ++G  N GKS+LFNALA K  A+V +I GTTRD+ ++
Sbjct: 14  RVALIGRPNVGKSTLFNALAGKQQALVANIAGTTRDINSV 53


>gi|119716729|ref|YP_923694.1| GTP-binding protein EngA [Nocardioides sp. JS614]
 gi|119537390|gb|ABL82007.1| small GTP-binding protein [Nocardioides sp. JS614]
          Length = 461

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           I I+G  N GKSSL N LA ++ A+V ++ GTT D +   ++L G   +  DTAGIR+
Sbjct: 203 IAIVGKPNVGKSSLLNKLAGEERAVVDNVAGTTVDPVDELIELGGKTWRFIDTAGIRK 260



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D    G    + DT G
Sbjct: 29  LAVVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDASWNGRAFTVVDTGG 83


>gi|297801602|ref|XP_002868685.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297314521|gb|EFH44944.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 623

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 11/94 (11%)

Query: 191 EVLNDIL----FLKN-DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           E+LNDI      L N ++S  I + KL        ++ I+G  N GKS+L NAL +++  
Sbjct: 291 EMLNDICSQDDALSNENLSDEIDESKLP------LQLAIVGKPNVGKSTLLNALLEEERV 344

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +V    G TRD + +  + +G  V + DTAG  E
Sbjct: 345 LVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLE 378


>gi|229828496|ref|ZP_04454565.1| hypothetical protein GCWU000342_00558 [Shuttleworthia satelles DSM
           14600]
 gi|229793090|gb|EEP29204.1| hypothetical protein GCWU000342_00558 [Shuttleworthia satelles DSM
           14600]
          Length = 310

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 30/178 (16%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISD 273
           + ++G+ + ++G  N GKS+L N L  + +AI ++ P TTR+ + T+  D +   +   D
Sbjct: 11  VTKSGF-VAMIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVYTDPDRGQIVFLD 69

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFP---- 317
           T GI +  + + +  +      +++ DLIL L E +++            ++I  P    
Sbjct: 70  TPGIHQAKNKLGQYMVGVAERSMKDVDLILWLIEPDTRVGGGDRHILKELEQIQIPVFLV 129

Query: 318 -KNIDFIFIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
              ID +       +  TY  EYD      + + +G+G ++LI  I       F +LP
Sbjct: 130 INKIDMVKKEKILAVIDTYRGEYDFDEILPVCARSGDGCKDLIESI-------FSRLP 180


>gi|254431559|ref|ZP_05045262.1| GTP-binding protein Era [Cyanobium sp. PCC 7001]
 gi|197626012|gb|EDY38571.1| GTP-binding protein Era [Cyanobium sp. PCC 7001]
          Length = 353

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 36/181 (19%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L  + VAI + +  TTR+ L   L      + + DT G
Sbjct: 48  RSGF-VALIGRPNVGKSTLLNQLVGQKVAITSPVAQTTRNRLRAILTTPTAQLVLLDTPG 106

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNI---- 320
           I +   ++ +  +K     +   D++LLL + + +            +    P ++    
Sbjct: 107 IHKPHHLLGERLVKTARGAIGEVDVVLLLVDGSQRAGRGDGFIVELLRHCRAPVHVALNK 166

Query: 321 -DFI--------------FIGTKSDL-YSTYTEEYD---HLISSFTGEGLEELINKIKSI 361
            D +               +G + D+     +E  D   H +S+ TGEG  EL+  + S 
Sbjct: 167 HDLVSGDQAAALAQSYRDLLGGRGDVAMPERSEPLDWPLHPVSALTGEGTAELVEALSSD 226

Query: 362 L 362
           L
Sbjct: 227 L 227


>gi|284097360|ref|ZP_06385484.1| tRNA modification GTPase trmE [Candidatus Poribacteria sp. WGA-A3]
 gi|283831125|gb|EFC35111.1| tRNA modification GTPase trmE [Candidatus Poribacteria sp. WGA-A3]
          Length = 88

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 358 IKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASV 414
           I+S+ L    +  P  + +  RH   L Q    +E  M SL  K+ G + +A ++R A  
Sbjct: 4   IQSVCLKEGLEATPSVLVTRLRHKASLEQAHCSIEEAMRSLERKESG-ECVALDIRAALD 62

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LG+ITG V  E +LD IF  FCIGK
Sbjct: 63  ALGEITGAVSTEDILDRIFQDFCIGK 88


>gi|229820636|ref|YP_002882162.1| small GTP-binding protein [Beutenbergia cavernae DSM 12333]
 gi|229566549|gb|ACQ80400.1| small GTP-binding protein [Beutenbergia cavernae DSM 12333]
          Length = 495

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N+L   +  +V D+ GTTRD +   ++L G      DTAGIR 
Sbjct: 235 RVALVGKPNVGKSSLLNSLTGSERVVVDDVAGTTRDPVDELIELGGRPWVFVDTAGIRR 293



 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +    +  G    + DT G     
Sbjct: 61  LAVIGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVRYTAEWAGRPFVLVDTGGWEHDA 120

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++  + VE AD ++ +
Sbjct: 121 RGLHARVAEQAEIAVELADAVMFV 144


>gi|240173132|ref|ZP_04751790.1| GTP-binding protein EngA [Mycobacterium kansasii ATCC 12478]
          Length = 466

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 19/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D+PG TRD ++ D    G    + DT G     
Sbjct: 32  VAIVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWSGRRFVVQDTGGWEPDA 91

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
             +++   ++  + +  AD ++L+ +          +   I             K D   
Sbjct: 92  KGLQQLVAEQASVAMRTADAVILVVDAGVGATTADEAAARILLRSGKPVFLAANKVDNEK 151

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  L+S    E  H +S+  G G+ +L++++ + L
Sbjct: 152 GEADAAALWSLGLGE-PHAVSAMHGRGVADLLDQVLAAL 189



 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA    ++V ++ GTT D +   +++ G + +  DTAG+R
Sbjct: 204 RVALVGKPNVGKSSLLNKLAGDQRSVVHEVAGTTVDPVDSLIEMGGKVWRFVDTAGLR 261


>gi|145224077|ref|YP_001134755.1| GTP-binding protein EngA [Mycobacterium gilvum PYR-GCK]
 gi|315444414|ref|YP_004077293.1| hypothetical protein Mspyr1_28320 [Mycobacterium sp. Spyr1]
 gi|145216563|gb|ABP45967.1| small GTP-binding protein [Mycobacterium gilvum PYR-GCK]
 gi|315262717|gb|ADT99458.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Mycobacterium sp. Spyr1]
          Length = 479

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 38/59 (64%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N L+  + ++V D+ GTT D +   ++++G L +  DTAG+R 
Sbjct: 216 RVALVGKPNVGKSSLLNRLSGDERSVVHDVAGTTVDPVDSLIEMDGKLWRFVDTAGLRR 274



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V DIPG TRD ++ D    G    + DT G
Sbjct: 43  LAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDASWLGQKFVVQDTGG 97


>gi|320353093|ref|YP_004194432.1| GTP-binding protein Era [Desulfobulbus propionicus DSM 2032]
 gi|320121595|gb|ADW17141.1| GTP-binding protein Era [Desulfobulbus propionicus DSM 2032]
          Length = 299

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  NAGKS+L N L  + +AIVT  P TTR+ +   +    Y + + DT G+    + 
Sbjct: 13  IIGPPNAGKSTLLNHLLGQKIAIVTPKPQTTRNRIMGIVTGTSYQMILLDTPGLHAAREE 72

Query: 284 VEKEGIKRTFLEVENADLILLL 305
           + ++ ++     +  AD+IL L
Sbjct: 73  MNRQMVRVALESLAEADVILFL 94


>gi|260905263|ref|ZP_05913585.1| GTP-binding protein EngA [Brevibacterium linens BL2]
          Length = 503

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N L   D  +V ++ GTTRD +   ++L     +  DTAGIR  
Sbjct: 243 RIALVGRPNVGKSSLLNQLIGSDRVLVDNVAGTTRDPVDELIELGDKQWRFVDTAGIRRR 302

Query: 281 DDIVEKE---GIKRTFLEVENADLILLLKEIN 309
                        RT   +E A+L L+L E+ 
Sbjct: 303 AHQASGADFYAALRTQTALERAELALVLLEVQ 334



 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++   +       + DT G
Sbjct: 69  LAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYRAEWNTKEFTLVDTGG 123


>gi|296164609|ref|ZP_06847176.1| ribosome-associated GTPase EngA [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295900028|gb|EFG79467.1| ribosome-associated GTPase EngA [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 466

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 19/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D    G    + DT G     
Sbjct: 32  VAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWTGRRFVVQDTGGWEPDA 91

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
             +++   ++  + +  AD ++L+ + +        +   I             K D   
Sbjct: 92  KGLQQLVAEQASVAMRTADAVILVVDASVGATSADEAAARILLRSGKPVFLAANKVDSEK 151

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                  L+S    E  H +S+  G G+ +L++++ + L    +  P
Sbjct: 152 GEADAAALWSLGLGE-PHAVSAMHGRGVADLLDEVLAALPEVSEAAP 197



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N LA    ++V D+ GTT D +   ++L G + +  DTAG+R 
Sbjct: 204 RVALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRR 262


>gi|291301883|ref|YP_003513161.1| small GTP-binding protein [Stackebrandtia nassauensis DSM 44728]
 gi|290571103|gb|ADD44068.1| small GTP-binding protein [Stackebrandtia nassauensis DSM 44728]
          Length = 465

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N L  +  A+V D+PG TRD +  D    G    + DT G
Sbjct: 25  VAVVGRPNVGKSTLVNRLIGRRQAVVEDVPGVTRDRIAYDAQWNGRKFTVVDTGG 79



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N LA +D  +V  + GTT D +   ++L G   +  DTAG+R+
Sbjct: 198 RVALVGKPNVGKSSLLNRLAGEDRVVVDSVAGTTVDPVDSLIELGGETWQFVDTAGLRK 256


>gi|118618580|ref|YP_906912.1| GTP-binding protein EngA [Mycobacterium ulcerans Agy99]
 gi|166225828|sp|A0PSX2|DER_MYCUA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|118570690|gb|ABL05441.1| GTP-binding protein, EngA [Mycobacterium ulcerans Agy99]
          Length = 469

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 26/167 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V DIPG TRD ++ D    G    + DT G     
Sbjct: 32  LAIVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDALWNGRRFVVQDTGGWEPDA 91

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
             +++   ++  + +  AD ++L+ +          +   I             K D   
Sbjct: 92  KGLQQLVAEQASVAMRTADAVVLVVDATVGATTADEAAARILLRSGKPVFLAANKVDSDK 151

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                  L+S    E  H IS+  G G+  L++ +        KKLP
Sbjct: 152 AEADAATLWSMGLGE-PHAISAMHGRGVANLLDTV-------LKKLP 190



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N LA  + ++V D+ GTT D +   ++L G + +  DTAG+R 
Sbjct: 204 RVALVGKPNVGKSSLLNKLAGDERSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRR 262


>gi|189425524|ref|YP_001952701.1| ferrous iron transporter B [Geobacter lovleyi SZ]
 gi|189421783|gb|ACD96181.1| ferrous iron transport protein B [Geobacter lovleyi SZ]
          Length = 657

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G+ N GKS LFNAL    V  V++ PGT+ +V      + G   ++ DT G+   
Sbjct: 16  RVALVGNPNVGKSVLFNALTGSYVT-VSNYPGTSVEVSRGTAVITGQSWQVIDTPGMYAV 74

Query: 281 DDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
             I E+E + R  L  E  D++L +L   N ++ ++    I  I  G    L     +E 
Sbjct: 75  HTITEEERVAREILLNEKPDVVLHVLDARNLERMLAM--TIQLIEAGLPVVLVVNIMDEA 132

Query: 340 DHLISSF 346
           + L  SF
Sbjct: 133 ERLGLSF 139


>gi|148284571|ref|YP_001248661.1| GTP-binding protein EngA [Orientia tsutsugamushi str. Boryong]
 gi|229784136|sp|A5CDT2|DER_ORITB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|146740010|emb|CAM80087.1| GTP-binding protein [Orientia tsutsugamushi str. Boryong]
          Length = 454

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKS+  NA+  ++  +     G TR+ + +D    G L+++ DTAG+R+ 
Sbjct: 189 QLAIVGRPNCGKSTFINAILNEERVLTGPESGLTRNSVEVDWKYCGQLIRLVDTAGVRKK 248

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
           + +    E   +  TF  +  A++++++
Sbjct: 249 NAVTQSCELLSVNDTFKTIRFANIVIVM 276



 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 93/198 (46%), Gaps = 22/198 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L+ ++ +IV D+PG TRD      +L   L+ + DT G+    
Sbjct: 6   VALVGKPNVGKSTLFNRLSLREKSIVHDLPGITRDRKYAKANLFSDLI-VVDTPGLEFAA 64

Query: 281 DDIVEKEGIKRTFLEVENADL----------ILLLKEINSKKEISFPKNIDFIFIGTKSD 330
              +E   ++++ + +  A++          IL + E  +       K    I +  K++
Sbjct: 65  AGSLEFNMMQQSLVAINEANIICFVVDAITGILPIDEECANLIRKHNKQSSTILVINKTE 124

Query: 331 LYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                 + Y  L       IS+  G+G+ EL + I++ILS   KK+     ++ +  Y+ 
Sbjct: 125 KPIILDKSYYKLGFSESICISAKHGQGIYELGDIIQNILSED-KKINVLTTTNTKCEYN- 182

Query: 384 SQTVRYLEMASLNEKDCG 401
            Q    L++A +   +CG
Sbjct: 183 -QQCPELQLAIVGRPNCG 199


>gi|306836038|ref|ZP_07469028.1| ribosome-associated GTPase EngA [Corynebacterium accolens ATCC
           49726]
 gi|304568065|gb|EFM43640.1| ribosome-associated GTPase EngA [Corynebacterium accolens ATCC
           49726]
          Length = 527

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N    +  A+V D PG TRD ++   D  G    + DT G     
Sbjct: 93  VAIVGRPNVGKSSLVNRFLGRREAVVEDQPGVTRDRVSYVADWNGQRFIVQDTGGWDPNV 152

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +  +  ++  + ++ AD+I+++
Sbjct: 153 KGMHADIARQAEMAMDTADVIVMV 176



 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N L  ++ ++V ++ GTT D +   + L+  L K  DTAG+R+
Sbjct: 265 RVALVGRPNVGKSSLLNKLTSEERSVVDNVAGTTVDPVDSLVQLDEQLWKFIDTAGLRK 323


>gi|226322424|ref|ZP_03797942.1| hypothetical protein COPCOM_00195 [Coprococcus comes ATCC 27758]
 gi|225209146|gb|EEG91500.1| hypothetical protein COPCOM_00195 [Coprococcus comes ATCC 27758]
          Length = 415

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 10/122 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  NAGKSS+ NA+  +++AIV+D+ GTT D +   ++L     V I DT G+ + 
Sbjct: 14  IGIFGRRNAGKSSIINAITGQNLAIVSDVLGTTTDPVPKAMELLPLGPVVIIDTPGLDDI 73

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSDLY 332
            ++ E   +K+ +  +   D+ +L+ + +   + +++S       K I ++ +  KSDL 
Sbjct: 74  GELGELR-VKKAYQILNKTDIAVLVIDASLGMTPEDLSILKKIQDKKIPYVVVKNKSDLC 132

Query: 333 ST 334
           S+
Sbjct: 133 SS 134


>gi|220903650|ref|YP_002478962.1| GTP-binding protein Era [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254783652|sp|B8J3P9|ERA_DESDA RecName: Full=GTPase Era
 gi|219867949|gb|ACL48284.1| GTP-binding protein Era [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 307

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L NAL  + V IVT  P TTR+ +   L  +       DT G
Sbjct: 7   RCGW-VALMGPPNAGKSTLLNALLGQKVTIVTPKPQTTRNQIVGILTDDDAQTIFMDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
           + +    + K  I+  +  +  AD+I+
Sbjct: 66  LTQVRGRLSKTMIQAVWQSLNQADIIM 92


>gi|85708673|ref|ZP_01039739.1| GTPase [Erythrobacter sp. NAP1]
 gi|85690207|gb|EAQ30210.1| GTPase [Erythrobacter sp. NAP1]
          Length = 432

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 30/183 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280
           I ++G++NAGKS+LFN L   +V +  D+   T D     + L G    I SDT G    
Sbjct: 204 IALVGYTNAGKSTLFNRLTGAEV-MAEDLLFATLDPTMRAISLPGVEKAILSDTVGFISD 262

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS------KKEI-------------SFPKNID 321
                    + T  EV  AD+I  ++++ +      KK++             S    I 
Sbjct: 263 LPTQLVAAFRATLEEVTGADIICHVRDMANPAHSAQKKQVMEVLSDLGVVDAESGESEIP 322

Query: 322 FIFIGTKSDLYS--TYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            + +  K+DL S  T TE  +        L+S+ +GEG+E   +KI  +L+   K++  +
Sbjct: 323 ILEVWNKADLLSEDTLTELREAAAGQDAVLLSASSGEGVEAFADKIADMLTASAKEVTIT 382

Query: 373 IPS 375
           +P+
Sbjct: 383 LPA 385


>gi|322807907|emb|CBZ05482.1| putative GTP-binding protien TM0445 [Clostridium botulinum H04402
           065]
          Length = 399

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 16/126 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I  +G +N+GKSSL NA+  +D++IV+ I GTT D ++  ++L     V  +DTAG
Sbjct: 8   NRIHITFIGKTNSGKSSLMNAIIGQDISIVSPIEGTTTDPVSKSMELIPLGPVLFTDTAG 67

Query: 277 IRETDDI--VEKEGIKRTFLEVENA---------DLILLLKEINSKKEISFPKNIDFIFI 325
           + +  ++  V  E    T L+ + A         D+ L  K IN  KE    +NI +I +
Sbjct: 68  LEDNTELGKVRIEKTLNTLLKTDFAIYVMSAKDIDINLYKKTINKFKE----QNISYITV 123

Query: 326 GTKSDL 331
             K D+
Sbjct: 124 INKMDI 129


>gi|322378788|ref|ZP_08053217.1| GTP-binding protein Era [Helicobacter suis HS1]
 gi|321148818|gb|EFX43289.1| GTP-binding protein Era [Helicobacter suis HS1]
          Length = 311

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 25/165 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-----IDLDLEGYLVKISDTAG 276
           I ++G  NAGKS+L NAL  + + +++     TR +L      +  D+E  +V + DT G
Sbjct: 22  IALIGRPNAGKSTLINALVYERLCLISHKANATRKILKAIVPYMQGDIECQMVFL-DTPG 80

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSDL 331
           I +   ++ +  IK+    +E+ DL + L  I+   E     ++   N   I    K+D 
Sbjct: 81  ICKPTKLLNQAMIKQIRHALESCDLAIFLASIHDSPEKYQEFLNLAPNKPHILALNKTDT 140

Query: 332 ------------YSTYTEEYDHLI--SSFTGEGLEELINKIKSIL 362
                       Y  Y+  +  LI  S+  G  LE L+ ++  +L
Sbjct: 141 ATPTKILAQIKAYQVYSAHFGALIPLSAAKGHHLEILLEEVAKLL 185


>gi|10176988|dbj|BAB10220.1| GTP-binding protein-like [Arabidopsis thaliana]
          Length = 514

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 11/94 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           N S  +VL D      ++S  I + KL        ++ I+G  N GKS+L NAL +++  
Sbjct: 173 NGSQDDVLTD-----ENLSDEIDESKLP------LQLAIVGKPNVGKSTLLNALLEEERV 221

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +V    G TRD + +  + +G  V + DTAG  E
Sbjct: 222 LVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLE 255


>gi|302875565|ref|YP_003844198.1| small GTP-binding protein [Clostridium cellulovorans 743B]
 gi|307690094|ref|ZP_07632540.1| small GTP-binding protein [Clostridium cellulovorans 743B]
 gi|302578422|gb|ADL52434.1| small GTP-binding protein [Clostridium cellulovorans 743B]
          Length = 411

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 19/179 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           I + G  NAGKSS+ NA+  + ++IV+DI GTT D +  +I++   G  V I DTAG+  
Sbjct: 14  IALFGKRNAGKSSVINAITNQQLSIVSDIEGTTTDPVYKSIEILPIGPCV-IIDTAGL-- 70

Query: 280 TDDIVEKEGIKRT-FLEVENADLILLLKEINSK------KEISF---PKNIDFIFIGTKS 329
            DD+ E   ++R   LEV N   I L+   ++K      KEI      K I  + +  K 
Sbjct: 71  -DDVGELGDLRRNKTLEVLNKTDIALIVADSTKGITGYDKEIIAEVKKKKIPLMILMNKI 129

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTV 387
           D  +    E ++L   F  E L+  ++ +  +  N+ K K+ F IP  K +   L   V
Sbjct: 130 DERNFEVNEIENLKKEFDCEVLK--VSAVTKVGINEVKEKISFLIPQDKENFRLLEGLV 186


>gi|86146683|ref|ZP_01065004.1| putative GTPase YlqF [Vibrio sp. MED222]
 gi|85835530|gb|EAQ53667.1| putative GTPase YlqF [Vibrio sp. MED222]
          Length = 311

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 13/104 (12%)

Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           F +E+ V+      S+KE +N ++ L   ++ H  Q  +G+ IR     +I+G  N GKS
Sbjct: 75  FEKEQGVKAIAITTSAKEEVNHVMELVRKLAPHREQ--MGKNIRT----MIMGIPNVGKS 128

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           ++ N LA + +A+  + P  TR    I+L   G +  +SDT GI
Sbjct: 129 TIINCLAGRTIAVTGNQPAVTRRQQRINLQ-NGVI--LSDTPGI 169


>gi|84684892|ref|ZP_01012792.1| GTP-binding protein HflX [Maritimibacter alkaliphilus HTCC2654]
 gi|84667227|gb|EAQ13697.1| GTP-binding protein HflX [Rhodobacterales bacterium HTCC2654]
          Length = 427

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 29/179 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +   +V +  D+   T D     +DL  G  V +SDT G    
Sbjct: 207 VALVGYTNAGKSTLFNRMTGAEV-MAKDMLFATLDPTMRGVDLPGGRTVILSDTVGFISD 265

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFIGT 327
                    + T  EV  ADLIL +++I                +++   +++  I +  
Sbjct: 266 LPTQLVAAFRATLEEVLGADLILHVRDIAHDETQEQAEDVLAILEDLGVDEDVPLIEVWN 325

Query: 328 KSD--------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKK----LPFS 372
           K D         Y T  +  D ++  S++TGEG++ L   I + LS + ++    +PFS
Sbjct: 326 KIDKLDDQTRAAYLTQADRTDEVVAMSAWTGEGVDALYPAIDAALSVETREEDLLIPFS 384


>gi|311739376|ref|ZP_07713211.1| ribosome-associated GTPase EngA [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305192|gb|EFQ81260.1| ribosome-associated GTPase EngA [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 526

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 42/84 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N    +  A+V D PG TRD ++   D  G    + DT G     
Sbjct: 93  VAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRISYVADWNGQRFLVQDTGGWDPNV 152

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++  + +E AD+I+++
Sbjct: 153 KGIHAAIARQAEVAMETADVIVMV 176



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 9/100 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N L  ++ ++V ++ GTT D +   + L+  L K  DTAG+R+ 
Sbjct: 265 RVALVGKPNVGKSSLLNKLTSEERSVVDNVAGTTVDPVDSLVQLDDQLWKFIDTAGLRKK 324

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315
             +   +G +     RT   ++ A++ ++L  I++ +EIS
Sbjct: 325 --VKNAQGHEYYASLRTRGVIDAAEVCIML--IDASEEIS 360


>gi|148381522|ref|YP_001256063.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931685|ref|YP_001385896.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153934957|ref|YP_001389303.1| GTP-binding protein [Clostridium botulinum A str. Hall]
 gi|148291006|emb|CAL85143.1| putative ATP/GTP-binding protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927729|gb|ABS33229.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152930871|gb|ABS36370.1| GTP-binding protein [Clostridium botulinum A str. Hall]
          Length = 399

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 16/125 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I  +G +N+GKSSL NA+  +D++IV+ I GTT D ++  ++L     V  +DTAG
Sbjct: 8   NRIHITFIGKTNSGKSSLMNAIIGQDISIVSPIEGTTTDPVSKSMELIPLGPVLFTDTAG 67

Query: 277 IRETDDI--VEKEGIKRTFLEVENA---------DLILLLKEINSKKEISFPKNIDFIFI 325
           + +  ++  V  E    T L+ + A         D+ L  K IN  KE    +NI +I +
Sbjct: 68  LEDNTELGKVRIEKTLNTLLKTDFAIYVMSAKDIDINLYKKTINKFKE----QNISYITV 123

Query: 326 GTKSD 330
             K D
Sbjct: 124 INKMD 128


>gi|72390988|ref|XP_845788.1| GTP-binding protein [Trypanosoma brucei TREU927]
 gi|62359296|gb|AAX79737.1| GTP-binding protein, putative [Trypanosoma brucei]
 gi|70802324|gb|AAZ12229.1| GTP-binding protein, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 576

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 19/131 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVA-----IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +I I+G  N+GKSSLFN L  +        +V D  G TRD +     LEG    I DT 
Sbjct: 109 RIAIVGRMNSGKSSLFNLLRLEPTVPGRSNVVRDFDGITRDSVEGQAQLEGMHFTIIDTP 168

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGT 327
           G      +V+   ++  F  VE AD  + +  ++     +E+S       K++  + +  
Sbjct: 169 G------MVQGRMVEEAFRTVETADAAIFVTAVDEDIMPEELSLMQYLHLKHMPVVLLAN 222

Query: 328 KSDLYSTYTEE 338
           K DL     EE
Sbjct: 223 KMDLIQEEEEE 233



 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I I+G +N+GKSSL N L   +     D   +TRD + +    +G  +K+ DTAG+
Sbjct: 309 RIAIVGRTNSGKSSLVNRLVGFERNRAVDEKNSTRDPVELPCSYKGRKLKLIDTAGL 365


>gi|256384053|gb|ACU78623.1| GTP-binding protein Era [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256384885|gb|ACU79454.1| GTP-binding protein Era [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296456013|gb|ADH22248.1| GTP-binding protein Era [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 301

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 31/170 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGI--- 277
           + I+G  N GKS+L N L  + ++IVT+ P TTR ++  I    + Y +   DT G+   
Sbjct: 9   VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDQYQIVFIDTPGVHTS 68

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFPKNIDF-----IFIGTK 328
            ++ D  +    +K T    ++ D+IL L    E+  K ++   K I+      I + TK
Sbjct: 69  KKQLDKFLNTSALKST----KDVDVILFLAPSDEVIGKNDLFLLKQIENLDVFKILVITK 124

Query: 329 SDL------------YSTYTEEYDHLI--SSFTGEGLEELINKIKSILSN 364
           +D             +S+Y +++D +I  SS T   +E+L+  I + LS+
Sbjct: 125 ADSVTKEQLILKANEWSSYQDQFDEIIITSSITNLNIEKLLELIVNNLSD 174


>gi|83319405|ref|YP_424480.1| GTP-binding protein Era [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|83283291|gb|ABC01223.1| GTP-binding protein Era [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 301

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 24/171 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           ++G+ + I+G  N GKS+L N L  + ++IVT+ P TTR ++  I    + Y +   DT 
Sbjct: 5   KSGF-VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDKYQIVFIDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISF---PKNIDF--IFIGT 327
           G+  T   ++K          ++ D+IL L    E+  K ++      KN+D   I + T
Sbjct: 64  GVHTTKKQLDKFLNTSALKSTKDVDVILFLAPSDEVIGKNDLFLLKQIKNLDVFKILVIT 123

Query: 328 KSD------------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSN 364
           K+D             +S Y +++D +I  SS T   +E+L+  I + LS+
Sbjct: 124 KADNVTKEQLILKAKEWSAYQDQFDEIIITSSLTNLNIEKLLELIVNNLSD 174


>gi|71892302|ref|YP_278036.1| GTP-binding protein EngA [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71796408|gb|AAZ41159.1| putative GTP-binding protein [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 471

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 31/169 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           I ++G  N GKS+LFN L     A++++ PG TRD        + +   + DT GI    
Sbjct: 5   ITLIGQKNVGKSTLFNKLTHTHDALISNYPGLTRDRQYGYFQCKQFKSILIDTGGIDKFC 64

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIF 324
             +T++I +     +T L ++ AD++L + +             N  K+I   KNI F+ 
Sbjct: 65  STKTENI-QSYVTYQTILAMQEADILLFVMDRQSVGTSINNDIFNFLKKIK--KNI-FVV 120

Query: 325 IGTKSDL-YSTYTEEYDH---------LISSFTGEGLEELINKIKSILS 363
           I    ++ +  +T  +D+          IS+  G G++ L+ KI S++S
Sbjct: 121 INKIDNIPHHIHTMIWDYCSFGIKNIIFISAIHGHGIDNLLEKISSLIS 169



 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 27/162 (16%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DD 282
           G  N+GKS+  N +  +   I    PGTTR+ + + +  +     + DTAG+++    D+
Sbjct: 211 GRPNSGKSTFVNHILGETRMITCSTPGTTRNCIHMPIMYDKQKYILIDTAGVQKNKRIDN 270

Query: 283 IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKSDLYS- 333
           + E+  I +TF  ++ A ++L + + N   S +++   + I       I +  K DL S 
Sbjct: 271 VAEQISILKTFQIIKTAHVLLFIGDANLGISDQDLHLLQFILNYGKALIIVINKWDLISP 330

Query: 334 -----TYTEEYD----------HLISSFTGEGLEELINKIKS 360
                T    Y+          H IS+  G G++ L   IK+
Sbjct: 331 DLRNTTKKNLYEKINFINFTQIHFISALYGNGIKALFQAIKA 372


>gi|195953604|ref|YP_002121894.1| GTP-binding proten HflX [Hydrogenobaculum sp. Y04AAS1]
 gi|195933216|gb|ACG57916.1| GTP-binding proten HflX [Hydrogenobaculum sp. Y04AAS1]
          Length = 370

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           I  H  + +   +  N  K+ ++G++NAGKSSL  AL KK+V  ++D+   T D      
Sbjct: 177 IKKHHKEQRKNRLKTNYLKVALVGYTNAGKSSLMKALTKKNV-FISDMLFATLDTKVGTS 235

Query: 263 DLEGYLVKISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320
            ++G  + I+DT G   R   ++V  E  K T  EV  ADL++ + +I+  +   + K I
Sbjct: 236 FIDGEKIFITDTVGFIDRLPPELV--ESFKTTLEEVTLADLLVFVVDISDHR---WLKKI 290

Query: 321 DFIF-----IGTKSDLYSTYTEEYDHLISS 345
           D +      IG K         + D L+SS
Sbjct: 291 DVVNKILEDIGVKDKPILYVFNKIDRLVSS 320


>gi|197117975|ref|YP_002138402.1| ferrous iron transport protein B [Geobacter bemidjiensis Bem]
 gi|197087335|gb|ACH38606.1| ferrous iron transport protein B [Geobacter bemidjiensis Bem]
          Length = 663

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GKS LFNAL    V  V++ PGT+ +V      + G   +I DT G+   
Sbjct: 23  KVALVGNPNVGKSVLFNALTGAYVT-VSNYPGTSVEVSRGSTAINGEEFEIIDTPGMYSI 81

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
             I E+E + R  L  E   L+L
Sbjct: 82  LPITEEERVAREILLTERPHLVL 104


>gi|33866147|ref|NP_897706.1| GTP-binding protein Era [Synechococcus sp. WH 8102]
 gi|33639122|emb|CAE08128.1| GTP-binding protein ERA homolog [Synechococcus sp. WH 8102]
          Length = 311

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I ++G  N GKS+L N L  + VAI + +  TTR+ L   L  E   + + DT G
Sbjct: 11  RSGF-IALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAILTTEDAQMVLVDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           I +   ++ +  ++     +   DL++LL E
Sbjct: 70  IHKPHHLLGERLVQSARSAIGEVDLVVLLLE 100


>gi|218676387|ref|YP_002395206.1| ribosomal biogenesis GTPase [Vibrio splendidus LGP32]
 gi|218324655|emb|CAV26234.1| putative GTPase [Vibrio splendidus LGP32]
          Length = 343

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 13/104 (12%)

Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           F +E+ V+      S+KE +N ++ L   ++ H  Q  +G+ IR     +I+G  N GKS
Sbjct: 107 FEKEQGVKAIAITTSAKEEVNHVMELVRKLAPHREQ--MGKNIRT----MIMGIPNVGKS 160

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           ++ N LA + +A+  + P  TR    I+L   G  V +SDT GI
Sbjct: 161 TIINCLAGRTIAVTGNQPAVTRRQQRINLQ-NG--VILSDTPGI 201


>gi|145295562|ref|YP_001138383.1| GTP-binding protein EngA [Corynebacterium glutamicum R]
 gi|140845482|dbj|BAF54481.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 543

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 5/104 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I+    ++ ++G  N GKSSL N  A +  ++V ++ GTT D +   + L+  L K  DT
Sbjct: 273 IVEGPRRVALVGKPNVGKSSLLNKFAGETRSVVDNVAGTTVDPVDSLIQLDQKLWKFVDT 332

Query: 275 AGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           AG+R   +T    E     RT   ++ A+L +LL  I+S + I+
Sbjct: 333 AGLRKKVKTASGHEYYASLRTHGAIDAAELCVLL--IDSSEPIT 374



 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD ++   D  G+   + DT G     
Sbjct: 107 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYISDWGGHRFWVQDTGGWDPNV 166

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++  + +  AD+I+ +
Sbjct: 167 KGIHASIAQQAEVAMSTADVIVFV 190


>gi|117928440|ref|YP_872991.1| small GTP-binding protein [Acidothermus cellulolyticus 11B]
 gi|117648903|gb|ABK53005.1| small GTP-binding protein [Acidothermus cellulolyticus 11B]
          Length = 458

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  AIV D+PG TRD ++ ++   G    I DT G
Sbjct: 17  VAVVGRPNVGKSTLVNRIVGRRQAIVEDVPGVTRDRVSYEVTWSGRRFTIVDTGG 71



 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           ++ I+G  N GKSSL N LA ++ A+V  + GTTRD +   + +     ++ DTAG+R  
Sbjct: 192 RVAIVGRPNVGKSSLLNRLAGEERALVDAVSGTTRDPVDAIVRIGDRRWRVVDTAGLRRR 251

Query: 280 --------------TDDIVEKEGIKRTFLE----VENADLILLLKEINSKKEISFPKN-I 320
                         TD  +         L+    +   D+ ++ K I++ + +    N  
Sbjct: 252 MRDAVGAEFYAGLRTDQAIRDAEAAVVLLDAAEPITEQDVRIVQKVIDAGRALVLAFNKW 311

Query: 321 DFIFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D +    +  L      E  H+       IS+ TG G+E+L   +++ L+   +++P +
Sbjct: 312 DAVDADRRLALAREIETELGHVGWAPRLNISARTGRGVEKLAAALETALAGWEQRVPTA 370


>gi|261329213|emb|CBH12192.1| GTP-binding protein, putative [Trypanosoma brucei gambiense DAL972]
          Length = 576

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 19/131 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVA-----IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +I I+G  N+GKSSLFN L  +        +V D  G TRD +     LEG    I DT 
Sbjct: 109 RIAIVGRMNSGKSSLFNLLRLEPTVPGRSNVVRDFDGITRDSVEGQAQLEGMHFTIIDTP 168

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGT 327
           G      +V+   ++  F  VE AD  + +  ++     +E+S       K++  + +  
Sbjct: 169 G------MVQGRMVEEAFRTVETADAAIFVTAVDEDIMPEELSLMQYLHLKHMPVVLLAN 222

Query: 328 KSDLYSTYTEE 338
           K DL     EE
Sbjct: 223 KMDLIQEEEEE 233



 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I I+G +N+GKSSL N L   +     D   +TRD + +    +G  +K+ DTAG+
Sbjct: 309 RIAIVGRTNSGKSSLVNRLVGFERNRAVDEKNSTRDPVELPCSYKGRKLKLIDTAGL 365


>gi|295105854|emb|CBL03397.1| GTP-binding protein Era [Gordonibacter pamelaeae 7-10-1-b]
          Length = 305

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
            E  ++G+ + ++G  NAGKS+L NA+  K +AI +D   TTR      L  E + + + 
Sbjct: 7   AEGFKSGF-VTLVGRPNAGKSTLINAIMGKKIAITSDTAQTTRHRFRAVLTREDFQLILV 65

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           DT G+ +  D + +E        +E+ D++ +L
Sbjct: 66  DTPGLHKPHDALGEELNTSALKALEDVDVVAML 98


>gi|308375656|ref|ZP_07668082.1| putative small GTP-binding protein domain protein [Mycobacterium
           tuberculosis SUMu007]
 gi|308345614|gb|EFP34465.1| putative small GTP-binding protein domain protein [Mycobacterium
           tuberculosis SUMu007]
          Length = 215

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD +  D    G    + DT G     
Sbjct: 29  VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 88

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++   ++  + +  AD ++L+
Sbjct: 89  KGLQRLVAEQASVAMRTADAVILV 112


>gi|291165839|gb|EFE27886.1| GTP-binding protein [Filifactor alocis ATCC 35896]
          Length = 393

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 10/125 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTA 275
           N   I   G +N GKSSL NA+A + V++V++  GTT D +   I+L   G  + I DTA
Sbjct: 8   NRIHISFFGKTNVGKSSLINAIAHQTVSLVSEQKGTTTDPVKKAIELHPIGPCLLI-DTA 66

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISF--PKNIDFIFIGTKS 329
           G  + + I+  E I+ T   VE  D+ + L   +S    ++ I++   KNI  +F+  KS
Sbjct: 67  GF-DDNSILGTERIELTKQVVEQTDIAIFLFGDSSFEEERQWITYLHDKNIPTVFVLNKS 125

Query: 330 DLYST 334
           D+  +
Sbjct: 126 DIVDS 130


>gi|210633812|ref|ZP_03297859.1| hypothetical protein COLSTE_01776 [Collinsella stercoris DSM 13279]
 gi|210159072|gb|EEA90043.1| hypothetical protein COLSTE_01776 [Collinsella stercoris DSM 13279]
          Length = 338

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L NA   + VAI + +  TTR  L   ++ EG  + I DT GI +  
Sbjct: 48  VALVGRPNAGKSTLLNACYGEKVAITSPVAQTTRRRLRAVVNREGCQLVIVDTPGIHKPK 107

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           D +  E  K    E+ + D+I  +
Sbjct: 108 DGLGSELNKSALGELADVDVIAFV 131


>gi|154497937|ref|ZP_02036315.1| hypothetical protein BACCAP_01917 [Bacteroides capillosus ATCC
           29799]
 gi|150272927|gb|EDN00084.1| hypothetical protein BACCAP_01917 [Bacteroides capillosus ATCC
           29799]
          Length = 296

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 15/123 (12%)

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
           + L+G W       R +   + D  E + +  FS   V+ ++L  K+ I    ++G++G 
Sbjct: 68  NRLWGDWF----RSRGWSVLETDAKEGKGINQFSP--VVKEVL--KDKIQQWQAKGQVGR 119

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
            IR     +I+G  N GKS+  N +A++  A  +D PG TR    + +D     + + DT
Sbjct: 120 PIR----AMIVGVPNVGKSTFINKVARRKSAKASDKPGVTRGKQWVAVDAG---LDLLDT 172

Query: 275 AGI 277
            GI
Sbjct: 173 PGI 175


>gi|212639341|ref|YP_002315861.1| GTP-binding protein protease modulator [Anoxybacillus flavithermus
           WK1]
 gi|212560821|gb|ACJ33876.1| GTP-binding protein protease modulator [Anoxybacillus flavithermus
           WK1]
          Length = 415

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I ++G++NAGKS+LFN L   D A+  ++   T D LT  L L  GY   ++DT G  
Sbjct: 196 FQIALVGYTNAGKSTLFNRLTNAD-ALEENLLFATLDPLTRKLVLPSGYTALLTDTVGFI 254

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  EV+ ADLIL
Sbjct: 255 QDLPTTLVAAFRSTLEEVKEADLIL 279


>gi|123436442|ref|XP_001309182.1| small GTP-binding protein [Trichomonas vaginalis G3]
 gi|121890897|gb|EAX96252.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
          Length = 434

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I ++G  NAGKS++ NA+ ++  +IV   PGTT D     +++      K+ DTAGI E 
Sbjct: 21  ISMVGFMNAGKSTIMNAITQQPTSIVDSTPGTTADTKVALMEIHALGPCKLIDTAGIDEK 80

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
             +  K+ IK T   V+ +D++L +
Sbjct: 81  GTLGRKKYIK-TESAVKESDVVLFV 104


>gi|312127538|ref|YP_003992412.1| gtp-binding protein era [Caldicellulosiruptor hydrothermalis 108]
 gi|311777557|gb|ADQ07043.1| GTP-binding protein Era [Caldicellulosiruptor hydrothermalis 108]
          Length = 300

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 31/208 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + ++G  N GKS+L N L  K ++I++  P TTR+ +   L LE   +   DT G
Sbjct: 4   KSGF-VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFPKNIDFI 323
           +    + + +  +K +   ++  DLIL + E             I   KE+  PK    I
Sbjct: 63  VHPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIEKLKEVETPK----I 118

Query: 324 FIGTKSDLYSTYTEE-----------YDHL--ISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  KSDL S    E           ++ +  I++  G   + L++KIK +L    K   
Sbjct: 119 LVLNKSDLASKENMEILKSIFSTKLNFESIVDIAAINGYNCDLLLSKIKELLPEGPKYYL 178

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398
             + +  R  + +++ +R   + +L+E+
Sbjct: 179 DDMTTDVRESFIVAEIIREKILLNLSEE 206


>gi|224009828|ref|XP_002293872.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970544|gb|EED88881.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 453

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 38/219 (17%)

Query: 190 KEVLND-ILFLKNDISSHISQGKLGEIIRNGYK------IVILGHSNAGKSSLFNALAKK 242
           K +L D IL LK  I     Q  L    R G K      + ++G++NAGKS+L N L K 
Sbjct: 160 KRILRDRILVLKEKIDDVQKQRDLH---RRGRKKGGLPVLALVGYTNAGKSTLLNCLTKA 216

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYL----VKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            + +  +I   T D  T  + L GY     V ++DT G  +          + T  EV+ 
Sbjct: 217 GI-LAENILFATLDPTTRRVKLPGYKTHPEVLLTDTVGFIQKLPTQLVAAFRATLEEVKE 275

Query: 299 ADLILLLKEINS----KKEISFPKNIDFIFIGTKSDLY-------------------STY 335
           AD+++ + ++++    K+E S  K +  I  G K  +                    +  
Sbjct: 276 ADVLVHIVDVSNPCWRKQEDSVTKVLSEIGAGDKPTVRVFNKLDLLDKEDAELIKYEAAC 335

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +E +   ISS TGEGL + +  ++  LS     +   +P
Sbjct: 336 SENFSVGISSLTGEGLSDFVAVVEDALSGLLVPIELELP 374


>gi|153940181|ref|YP_001392939.1| GTP-binding protein [Clostridium botulinum F str. Langeland]
 gi|152936077|gb|ABS41575.1| GTP-binding protein [Clostridium botulinum F str. Langeland]
 gi|295320917|gb|ADG01295.1| GTP-binding protein [Clostridium botulinum F str. 230613]
          Length = 399

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 8/122 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I  +G +N+GKSSL NA+  +D++IV+ I GTT D ++  ++L     V  +DTAG
Sbjct: 8   NRIHITFIGKTNSGKSSLMNAIIGQDISIVSPIEGTTTDPVSKSMELIPLGPVLFTDTAG 67

Query: 277 IRETDDI--VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK--NIDFIFIGTKS 329
           + +  ++  V  E    T L+ + A  ++  K+I+    KK I+  K  NI +I +  K 
Sbjct: 68  LEDNTELGKVRIEKTLNTLLKTDFAIYVMSAKDIDINVYKKTINKFKEQNISYITVINKM 127

Query: 330 DL 331
           D+
Sbjct: 128 DI 129


>gi|297624209|ref|YP_003705643.1| GTP-binding proten HflX [Truepera radiovictrix DSM 17093]
 gi|297165389|gb|ADI15100.1| GTP-binding proten HflX [Truepera radiovictrix DSM 17093]
          Length = 568

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 32/196 (16%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVL 258
           IS   ++G+ G        I ++G++NAGKS+LFNALAK DV     +   +  TTR+  
Sbjct: 366 ISQRRAEGRKGRKASEVPVIALVGYTNAGKSTLFNALAKADVLSQNRLFATLRPTTREGW 425

Query: 259 TIDLDLEGYLVKISDTAG-IRETDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEIS 315
              L   G  V  +DT G IR   D+ E+  +  + T  E+ +A+L+L + +  +     
Sbjct: 426 LPALGAWGGKVLYTDTVGFIR---DLPEELVDAFRATLEELHDAELLLHVVDAATPGAPD 482

Query: 316 FPKNIDFIF-----------IGTKSDLYST-----YTEEYDHL-ISSFTGEGLEELINKI 358
               ++ I            +  K+DL +        + Y+ L +S+ TG GL+ L   +
Sbjct: 483 RVAAVNRILDDLGVEVPRTVVLNKADLAAPAELKDLAKRYNALGVSAATGAGLDALKASL 542

Query: 359 KSILSNKFKKLPFSIP 374
             +L       P  +P
Sbjct: 543 AQLLEG-----PRHVP 553


>gi|19552644|ref|NP_600646.1| GTP-binding protein EngA [Corynebacterium glutamicum ATCC 13032]
 gi|62390312|ref|YP_225714.1| GTP-binding protein EngA [Corynebacterium glutamicum ATCC 13032]
 gi|41325649|emb|CAF21438.1| GTPase of unknown function [Corynebacterium glutamicum ATCC 13032]
          Length = 543

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 5/104 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I+    ++ ++G  N GKSSL N  A +  ++V ++ GTT D +   + L+  L K  DT
Sbjct: 273 IVEGPRRVALVGKPNVGKSSLLNKFAGETRSVVDNVAGTTVDPVDSLIQLDQKLWKFVDT 332

Query: 275 AGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           AG+R   +T    E     RT   ++ A+L +LL  I+S + I+
Sbjct: 333 AGLRKKVKTASGHEYYASLRTHGAIDAAELCVLL--IDSSEPIT 374



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD ++   D  G+   + DT G     
Sbjct: 107 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYISDWGGHRFWVQDTGGWDPNV 166

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++  + +  AD+I+ +
Sbjct: 167 KGIHASIAQQAEVAMSTADVIVFV 190


>gi|326387677|ref|ZP_08209283.1| GTP-binding protein Era [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207723|gb|EGD58534.1| GTP-binding protein Era [Novosphingobium nitrogenifigens DSM 19370]
          Length = 312

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280
           + ++G  NAGKS+L NAL  + VAIV+    TTR  L + + LEG   + + DT G+ E 
Sbjct: 23  VAVIGAPNAGKSTLVNALVGQKVAIVSSKAQTTRARL-MGIALEGPAQIILVDTPGLFEP 81

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
              +++  +   +   E AD I+L+ +   KK
Sbjct: 82  RRRLDRAMVHAAWEGAEAADAIVLVVDARKKK 113


>gi|242091397|ref|XP_002441531.1| hypothetical protein SORBIDRAFT_09g028770 [Sorghum bicolor]
 gi|241946816|gb|EES19961.1| hypothetical protein SORBIDRAFT_09g028770 [Sorghum bicolor]
          Length = 459

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 30/247 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R+GY + +LG  N GKS+L N +  + ++IVTD P TTR  +L I  + E Y + + DT 
Sbjct: 119 RSGY-VAVLGKPNVGKSTLINQMVGQKLSIVTDKPQTTRHRILGICSEPE-YQIILYDTP 176

Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLIL--------------LLKEINSKKEISFP--- 317
           G I++    ++   +K     + +AD +L              +L+E    K+I+ P   
Sbjct: 177 GVIKKEMHKLDSMMMKNVRSAIGSADCVLVVADACKAPEKIDEMLEEGVGNKDIALPVLL 236

Query: 318 --KNIDFIF---IGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                D I    I  K + Y  +T   D + IS+  G G++++   I S L       P 
Sbjct: 237 VLNKKDLIKPGEIAKKLEWYQKFTNVDDVIPISAKFGNGVDDIKEWILSKLPLGPAYYPK 296

Query: 372 SIPSHKRHLYHLSQTVR---YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428
            I S     + + + VR   +++        C +++++   R  +    ++   V+ E  
Sbjct: 297 DIASEHPERFFVGEIVREKIFVQYRQEIPYSCQVNVVSYKSRPTAKDFIQVEILVEKETQ 356

Query: 429 LDIIFSK 435
             II  K
Sbjct: 357 RSIILGK 363


>gi|314962902|gb|EFT07002.1| GTP-binding protein Era [Propionibacterium acnes HL082PA1]
          Length = 342

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 27/192 (14%)

Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E 
Sbjct: 30  ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 89

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316
             + + DT G+ +   ++ +      F      D+I +    N +          EI+  
Sbjct: 90  SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSEIAEL 149

Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362
           P+    I + TKSDL S     E+   I    GE G+E            E I++++ ++
Sbjct: 150 PRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDVI 209

Query: 363 SNKFKKLPFSIP 374
           ++   + P   P
Sbjct: 210 ASLLPEGPAYYP 221


>gi|300787849|ref|YP_003768140.1| GTP-binding protein EngA [Amycolatopsis mediterranei U32]
 gi|299797363|gb|ADJ47738.1| GTP-binding protein EngA [Amycolatopsis mediterranei U32]
          Length = 487

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 42/84 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D    G    + DT G     
Sbjct: 44  LAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVAYDAYWGGRKFTLVDTGGWEPDA 103

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     +  L ++ AD +LL+
Sbjct: 104 TGLQASVAAQAELAMQTADAVLLV 127



 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 38/59 (64%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N L+ ++ ++V  + GTT D +   ++L+G   +  DTAG+R+
Sbjct: 217 RVALVGKPNVGKSSLLNKLSGEERSVVDSVAGTTVDPVDSLVELDGETWRFVDTAGLRK 275


>gi|253701232|ref|YP_003022421.1| ferrous iron transporter B [Geobacter sp. M21]
 gi|251776082|gb|ACT18663.1| ferrous iron transport protein B [Geobacter sp. M21]
          Length = 663

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GKS LFNAL    V  V++ PGT+ +V      + G   +I DT G+   
Sbjct: 23  KVALVGNPNVGKSVLFNALTGAYVT-VSNYPGTSVEVSRGSTAINGEEFEIIDTPGMYSI 81

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
             I E+E + R  L  E   L+L
Sbjct: 82  LPITEEERVAREILLTERPHLVL 104


>gi|86740164|ref|YP_480564.1| GTP-binding protein EngA [Frankia sp. CcI3]
 gi|86567026|gb|ABD10835.1| Small GTP-binding protein domain [Frankia sp. CcI3]
          Length = 487

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D    G    + DT G     
Sbjct: 51  VAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDAVWSGRRFTLVDTGGWEPDA 110

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD--- 330
             +  +  ++    ++ AD +L + ++         +   +     +  I +  K D   
Sbjct: 111 TGLAAQVSEQARAALDTADAVLFIVDVVTGATDADEAVARVLHRCGLPVILVANKVDDVR 170

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                  L+S    E  H +S+  G G  +L++ + + L    +++
Sbjct: 171 FEADAAALWSLGLGE-PHPVSALHGRGSGDLLDAVLAALPEAPREI 215



 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA    ++V D+ GTTRD +   + + G      DTAG+R  
Sbjct: 224 RVALIGRPNVGKSSLLNKLAGSRRSLVHDVAGTTRDPVDELVTVGGEEWMFIDTAGLRRR 283

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305
             + E  G +     RT   +E A++ ++L
Sbjct: 284 --VREASGAEYYSSLRTASALEAAEVAIVL 311


>gi|294460854|gb|ADE76000.1| unknown [Picea sitchensis]
          Length = 324

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 32/184 (17%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +G   R+GY + ++G  N GKS+L N +  + ++IVTD P TTR  +        Y + +
Sbjct: 129 VGPDHRSGY-VAVVGKPNVGKSTLLNQMIGQKLSIVTDKPQTTRHRILGLCSAPDYQMVL 187

Query: 272 SDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNI 320
            DT G+ + +   ++   +K       NAD +L + ++    E          +   K  
Sbjct: 188 YDTPGVIQKEMHKLDAMMMKNVHSATGNADCVLTVVDVCRVPEKVNDLFEEDGVDLKKKP 247

Query: 321 DFIFIGTKSDLYST--------YTEEY---DHL--ISSFTGEGLEELINKIKSILSNKFK 367
             + +  K DL           + E++   DH+  IS+  G G+E++ N I S       
Sbjct: 248 PTLLVLNKKDLMKPGEIAKRMEWYEKFGGADHILSISAKYGHGVEDVKNWIVS------- 300

Query: 368 KLPF 371
           KLP+
Sbjct: 301 KLPY 304


>gi|162147936|ref|YP_001602397.1| GTP-binding protein Era [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786513|emb|CAP56095.1| putative GTP-binding protein era homolog [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 305

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 28/180 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+ + I+G  NAGKS+L N +A   ++IV+    TTR  VL I +  E  ++ + DT 
Sbjct: 12  RCGF-VAIVGAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRVLGILMRGESQILLV-DTP 69

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL----------------KEINSKKEISFPKN 319
           GI +    +++  +   +   E+AD+ LLL                +   S++ +    N
Sbjct: 70  GIFQPRRKLDRAMVAAAWTGAEDADITLLLVDARRGLSESVRAIVERLAQSRRRVWLVLN 129

Query: 320 -IDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             D +     +   ++L +    E+ +++S+ +G+G+E+L+    S L+    + P+  P
Sbjct: 130 KTDLVDRQALLPLTAELSALLDVEHVYMVSARSGDGVEDLL----SALAASLPEGPYLYP 185


>gi|145482289|ref|XP_001427167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394246|emb|CAK59769.1| unnamed protein product [Paramecium tetraurelia]
          Length = 608

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 37/209 (17%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EG 266
           S+ K  ++I    +I ++G++NAGKS L N + +KDV    D+   T D  +  + L  G
Sbjct: 342 SKIKRKKLIHTVPRIALIGYTNAGKSQLLNCILQKDVVQSKDLLFQTLDTTSKSIRLASG 401

Query: 267 YLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK------------ 311
               + DT G   TD   D+V  E  K T  EVE+AD++L +++I+              
Sbjct: 402 QKAIMLDTIGFI-TDLPHDLV--ESFKCTLEEVEDADIVLHIRDISHPCTEQQKQVVLDV 458

Query: 312 -KEISFPK---NIDFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELIN-- 356
            KE+ F +   N   I +  K DL S Y  +Y+ +         +S+     +++L+   
Sbjct: 459 LKELGFNQDFYNKKMIEVWNKIDLMS-YPIDYEFIESQDYPIVPVSALMNINIKKLLQVM 517

Query: 357 --KIKSILSNKFKKLPFSIPSHKRHLYHL 383
             K   IL+ K  ++ ++I  H   L  L
Sbjct: 518 EEKSNQILNKKLYRIRYNIEQHFERLRWL 546


>gi|313764555|gb|EFS35919.1| GTP-binding protein Era [Propionibacterium acnes HL013PA1]
 gi|313792243|gb|EFS40344.1| GTP-binding protein Era [Propionibacterium acnes HL110PA1]
 gi|313801808|gb|EFS43042.1| GTP-binding protein Era [Propionibacterium acnes HL110PA2]
 gi|313816096|gb|EFS53810.1| GTP-binding protein Era [Propionibacterium acnes HL059PA1]
 gi|313827675|gb|EFS65389.1| GTP-binding protein Era [Propionibacterium acnes HL063PA2]
 gi|313838634|gb|EFS76348.1| GTP-binding protein Era [Propionibacterium acnes HL086PA1]
 gi|314915551|gb|EFS79382.1| GTP-binding protein Era [Propionibacterium acnes HL005PA4]
 gi|314918495|gb|EFS82326.1| GTP-binding protein Era [Propionibacterium acnes HL050PA1]
 gi|314919982|gb|EFS83813.1| GTP-binding protein Era [Propionibacterium acnes HL050PA3]
 gi|314931995|gb|EFS95826.1| GTP-binding protein Era [Propionibacterium acnes HL067PA1]
 gi|314955864|gb|EFT00264.1| GTP-binding protein Era [Propionibacterium acnes HL027PA1]
 gi|314958345|gb|EFT02448.1| GTP-binding protein Era [Propionibacterium acnes HL002PA1]
 gi|314968021|gb|EFT12120.1| GTP-binding protein Era [Propionibacterium acnes HL037PA1]
 gi|315078117|gb|EFT50168.1| GTP-binding protein Era [Propionibacterium acnes HL053PA2]
 gi|315098436|gb|EFT70412.1| GTP-binding protein Era [Propionibacterium acnes HL059PA2]
 gi|315101207|gb|EFT73183.1| GTP-binding protein Era [Propionibacterium acnes HL046PA1]
 gi|327450881|gb|EGE97535.1| GTP-binding protein Era [Propionibacterium acnes HL087PA3]
 gi|327453042|gb|EGE99696.1| GTP-binding protein Era [Propionibacterium acnes HL092PA1]
 gi|327453770|gb|EGF00425.1| GTP-binding protein Era [Propionibacterium acnes HL083PA2]
 gi|328754301|gb|EGF67917.1| GTP-binding protein Era [Propionibacterium acnes HL087PA1]
 gi|328754447|gb|EGF68063.1| GTP-binding protein Era [Propionibacterium acnes HL025PA2]
          Length = 342

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 27/192 (14%)

Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E 
Sbjct: 30  ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 89

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316
             + + DT G+ +   ++ +      F      D+I +    N +          EI+  
Sbjct: 90  SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSEIAEL 149

Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362
           P+    I + TKSDL S     E+   I    GE G+E            E I++++ ++
Sbjct: 150 PRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDVI 209

Query: 363 SNKFKKLPFSIP 374
           ++   + P   P
Sbjct: 210 ASLLPEGPAYYP 221


>gi|289425268|ref|ZP_06427045.1| GTP-binding protein Era [Propionibacterium acnes SK187]
 gi|289154246|gb|EFD02934.1| GTP-binding protein Era [Propionibacterium acnes SK187]
          Length = 340

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 27/192 (14%)

Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E 
Sbjct: 28  ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 87

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316
             + + DT G+ +   ++ +      F      D+I +    N +          EI+  
Sbjct: 88  SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSEIAEL 147

Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362
           P+    I + TKSDL S     E+   I    GE G+E            E I++++ ++
Sbjct: 148 PRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDVI 207

Query: 363 SNKFKKLPFSIP 374
           ++   + P   P
Sbjct: 208 ASLLPEGPAYYP 219


>gi|26006713|sp|Q8NQK6|DER_CORGL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|21324196|dbj|BAB98821.1| Predicted GTPases [Corynebacterium glutamicum ATCC 13032]
          Length = 519

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 5/104 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I+    ++ ++G  N GKSSL N  A +  ++V ++ GTT D +   + L+  L K  DT
Sbjct: 249 IVEGPRRVALVGKPNVGKSSLLNKFAGETRSVVDNVAGTTVDPVDSLIQLDQKLWKFVDT 308

Query: 275 AGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           AG+R   +T    E     RT   ++ A+L +LL  I+S + I+
Sbjct: 309 AGLRKKVKTASGHEYYASLRTHGAIDAAELCVLL--IDSSEPIT 350



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD ++   D  G+   + DT G     
Sbjct: 83  VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYISDWGGHRFWVQDTGGWDPNV 142

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++  + +  AD+I+ +
Sbjct: 143 KGIHASIAQQAEVAMSTADVIVFV 166


>gi|83952357|ref|ZP_00961088.1| GTP-binding protein EngA [Roseovarius nubinhibens ISM]
 gi|83836030|gb|EAP75328.1| GTP-binding protein EngA [Roseovarius nubinhibens ISM]
          Length = 479

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 41/66 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  NAGKS+L N +  ++  +     G TRD +++ ++ +G  +++ DTAG+R+ 
Sbjct: 192 QVAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLKMNWDGVPMRVFDTAGMRKK 251

Query: 281 DDIVEK 286
             + EK
Sbjct: 252 AKVQEK 257



 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 6/95 (6%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGI 289
           GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ + TDD ++    
Sbjct: 2   GKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVIDTAGLEDATDDSLQGRMR 61

Query: 290 KRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
           + T   V+ AD+ L +  I+++  ++    ID +F
Sbjct: 62  RLTERAVDMADICLFV--IDARTGVT---PIDEVF 91


>gi|254449216|ref|ZP_05062665.1| GTP-binding protein EngA [gamma proteobacterium HTCC5015]
 gi|198261193|gb|EDY85489.1| GTP-binding protein EngA [gamma proteobacterium HTCC5015]
          Length = 472

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 5/98 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS+L N +  +   +  D PGTTRD + +  + E     + DTAG+R+ 
Sbjct: 180 RIAVVGRPNVGKSTLINRILGETRVLAYDAPGTTRDSIFVPFESELGRYTLIDTAGVRKR 239

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             I   VEK  + +    +  A ++L +  I++++ ++
Sbjct: 240 GKIHETVEKFSVVKALQAIAEAHVVLQV--IDARRGVA 275



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L +   A+V D+PG TRD    +  L      + DT G+    
Sbjct: 5   IAIVGRPNVGKSTLFNCLTRTRDALVADMPGLTRDRKYGNGKLGDRAYVVVDTGGLSTDQ 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           D ++     +    ++ AD++L +  ++S++ I+
Sbjct: 65  DEMDNLMASQAQQAMDEADILLFM--VDSREGIN 96


>gi|193071490|ref|ZP_03052402.1| putative GTPase [Escherichia coli E110019]
 gi|192955212|gb|EDV85703.1| putative GTPase [Escherichia coli E110019]
          Length = 290

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D  G+ E+ +   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMIITDLPGVGESRNRDAEYEALYRDIL--PELDLVLWL 121


>gi|312135210|ref|YP_004002548.1| gtp-binding protein era [Caldicellulosiruptor owensensis OL]
 gi|311775261|gb|ADQ04748.1| GTP-binding protein Era [Caldicellulosiruptor owensensis OL]
          Length = 300

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 96/208 (46%), Gaps = 31/208 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + ++G  N GKS+L N L  K ++I++  P TTR+ +   L LE   +   DT G
Sbjct: 4   KSGF-VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFPKNIDFI 323
           +    + + +  +K +   ++  DLIL + E             +   KE+  PK    I
Sbjct: 63  VHPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIVEKLKEVETPK----I 118

Query: 324 FIGTKSDLYSTYTEE-----------YDHL--ISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  KSDL S    E           ++ +  I++  G   + L+N+IK +L    K   
Sbjct: 119 LVLNKSDLASKENIEVLKSIFSAKLNFESIIDIAAINGYNCDLLLNEIKELLPEGPKYYL 178

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398
             + +  R  + +++ +R   + +L+E+
Sbjct: 179 DDMTTDVRESFIVAEIIREKILLNLSEE 206


>gi|309388705|gb|ADO76585.1| iron-only hydrogenase maturation protein HydF [Halanaerobium
           praevalens DSM 2228]
          Length = 415

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 63/138 (45%), Gaps = 18/138 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I + G  N GKSSL N L  +D+A+V+  PGTT D +   ++L     V I DTAGI + 
Sbjct: 12  IAVFGRRNVGKSSLINRLTNQDLALVSSQPGTTTDPVYKAMELLPIGPVMIIDTAGIDDQ 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLL------------KEINSKKEISFPKNIDFIFIGTK 328
            ++     IK+T   +   DL LL+            K I   KE    KNI F+ I  K
Sbjct: 72  GELGAMR-IKKTKEIMRKTDLALLVISAAQGAGDFERKLIKDFKE----KNIPFLTILNK 126

Query: 329 SDLYSTYTEEYDHLISSF 346
            D+      E   L S  
Sbjct: 127 IDILKDLNSEQVELKSEL 144


>gi|317055259|ref|YP_004103726.1| small GTP-binding protein [Ruminococcus albus 7]
 gi|315447528|gb|ADU21092.1| small GTP-binding protein [Ruminococcus albus 7]
          Length = 396

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 16/170 (9%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKI 271
           GE +  G+     G  NAGKSS+ NA   +++AIV+D PGTT D +   ++L     V I
Sbjct: 9   GERVHIGF----FGRRNAGKSSVVNAFTNQELAIVSDTPGTTTDPVYKAMELLPMGPVMI 64

Query: 272 SDTAGIRETDDIVE------KEGIKRTFLEVENADLILLLKEINSKKEISF--PKNIDFI 323
            DT G  +   + E       E + RT   V   D    L E + K+ I     + I ++
Sbjct: 65  IDTPGYDDEGKLGELRVRKTSEVLGRTDCAVLVTDCTRDLDE-SEKQLIKLFDSRRIPYV 123

Query: 324 FIGTKSDLYS--TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
               KSDL       +E +  +S+     + EL  K+  + + K + +P 
Sbjct: 124 IAKNKSDLLDDIPAADEKEIYVSALNNTMIHELREKVAQLSAYKEQNVPL 173


>gi|296535949|ref|ZP_06898098.1| GTP-binding protein Era [Roseomonas cervicalis ATCC 49957]
 gi|296263722|gb|EFH10198.1| GTP-binding protein Era [Roseomonas cervicalis ATCC 49957]
          Length = 319

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 25/174 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N LA   V+IV+  P TTR  +   +  E   + ++DT GI    
Sbjct: 30  VAVVGAPNAGKSTLVNRLAGAKVSIVSPKPQTTRFRIRAVVMQERTQIVLTDTPGIFSPR 89

Query: 282 DIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYS 333
             +++  +   +   ++ADL LL+        + + S   +     +    +  KSDL  
Sbjct: 90  RRLDRAMVAAAWEGAQDADLALLIVDSRAGMTEAVESIISVLKRSRVPIWLVLNKSDLID 149

Query: 334 T-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           T              + E   +IS+  G+GL+ ++    + L  +  + P+  P
Sbjct: 150 TKKLLPLTASLNEQLSFEETFMISAEKGDGLDRMM----AALGRRLPEGPWLFP 199


>gi|322418933|ref|YP_004198156.1| ferrous iron transport protein B [Geobacter sp. M18]
 gi|320125320|gb|ADW12880.1| ferrous iron transport protein B [Geobacter sp. M18]
          Length = 663

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GKS LFNAL    V  V++ PGT+ +V   +  + G   ++ DT G+   
Sbjct: 23  KVALVGNPNVGKSVLFNALTGAYVT-VSNYPGTSVEVSRGNAVINGEEFEVIDTPGMYSI 81

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
             I E+E + R  L  E   L+L
Sbjct: 82  LPITEEERVAREILLTERPHLVL 104


>gi|42560997|ref|NP_975448.1| GTP-binding protein Era [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|42492494|emb|CAE77090.1| GTP-BINDING PROTEIN ERA HOMOLOG [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301320412|gb|ADK69055.1| GTP-binding protein Era [Mycoplasma mycoides subsp. mycoides SC
           str. Gladysdale]
          Length = 301

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 31/170 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGI--- 277
           + I+G  N GKS+L N L  + ++IVT+ P TTR ++  I    + Y +   DT G+   
Sbjct: 9   VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDQYQIVFIDTPGVHTS 68

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISF---PKNIDF--IFIGTK 328
            ++ D  +    +K T    ++ D+IL L    E+  K ++      KN+D   I + TK
Sbjct: 69  KKQLDKFLNTSALKST----KDVDVILFLAPSDEVIGKNDLFLLKQIKNLDVFKILVITK 124

Query: 329 SD------------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSN 364
           +D             +S+Y +++D +I  SS T   +E+L+  I + LS+
Sbjct: 125 ADNVTKEQLILKANEWSSYQDQFDEIIITSSITNLNIEKLLELIVNNLSD 174


>gi|269795601|ref|YP_003315056.1| GTP-binding proten HflX [Sanguibacter keddieii DSM 10542]
 gi|269097786|gb|ACZ22222.1| GTP-binding proten HflX [Sanguibacter keddieii DSM 10542]
          Length = 515

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 31/197 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL NAL    V    A+   +  T R   T D    G +  ++DT G 
Sbjct: 296 VAIAGYTNAGKSSLLNALTGAGVLVENALFATLDPTVRRTKTPD----GRVYTLADTVGF 351

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI--SFPKNIDF--IF 324
             +      E  + T  EV ++DL+L +          +I + + +    P  +D   + 
Sbjct: 352 VRSLPHQLVEAFRSTLEEVADSDLLLHVVDASHPDPEGQIAAVRHVLEGIPGALDVPEVI 411

Query: 325 IGTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +  K+DL    T       E    ++S+ TGEG+ EL++ I   L +    +   +P  +
Sbjct: 412 VLNKADLADPDTIARLRSRERTTLVVSAHTGEGITELLDLISGALPHPGVTVDLIVPYSR 471

Query: 378 RHL---YHLSQTVRYLE 391
             L    HL   + +LE
Sbjct: 472 GDLVNRVHLEGEIDHLE 488


>gi|269123217|ref|YP_003305794.1| GTP-binding protein HSR1-like protein [Streptobacillus moniliformis
           DSM 12112]
 gi|268314543|gb|ACZ00917.1| GTP-binding protein HSR1-related protein [Streptobacillus
           moniliformis DSM 12112]
          Length = 391

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 44/73 (60%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
            +I++  L + + +  KI ++G SN GKS+L N L +K+++ V+   GTT+ +L      
Sbjct: 154 QYIAKNILKKSLDSNVKIAVIGVSNVGKSNLINLLLEKNISTVSKFSGTTKKMLVNKKKT 213

Query: 265 EGYLVKISDTAGI 277
           + Y++ I DT G+
Sbjct: 214 KEYMLTIIDTPGL 226


>gi|209542554|ref|YP_002274783.1| GTP-binding protein Era [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530231|gb|ACI50168.1| GTP-binding protein Era [Gluconacetobacter diazotrophicus PAl 5]
          Length = 297

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 28/180 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+ + I+G  NAGKS+L N +A   ++IV+    TTR  VL I +  E  ++ + DT 
Sbjct: 4   RCGF-VAIVGAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRVLGILMRGESQILLV-DTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL----------------KEINSKKEISFPKN 319
           GI +    +++  +   +   E+AD+ LLL                +   S++ +    N
Sbjct: 62  GIFQPRRKLDRAMVAAAWTGAEDADITLLLVDARRGLSESVRAIVERLAQSRRRVWLVLN 121

Query: 320 -IDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             D +     +   ++L +    E+ +++S+ +G+G+E+L+    S L+    + P+  P
Sbjct: 122 KTDLVDRQALLPLTAELSALLDVEHVYMVSARSGDGVEDLL----SALAASLPEGPYLYP 177


>gi|103486700|ref|YP_616261.1| GTP-binding protein Era [Sphingopyxis alaskensis RB2256]
 gi|98976777|gb|ABF52928.1| GTP-binding protein Era [Sphingopyxis alaskensis RB2256]
          Length = 297

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 28/180 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R G+ + ++G  NAGKS+L NAL  + VAIV+    TTR  ++ + ++ E  +V I DT 
Sbjct: 4   RCGF-VAVVGAPNAGKSTLVNALVGQKVAIVSPKAQTTRTRLMGVAMEGETQIVLI-DTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI------------ 323
           GI      +++  +   +  +E A+ IL++ +  +K      + +D I            
Sbjct: 62  GIFAPARRLDRAMVAAAWGSLEQAEAILVMVDAAAKPTGRVERVLDGIANRPEKKYLILN 121

Query: 324 ---------FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                     +   +DL +  T +    I++ +G+G+ EL    K+ L+    + P+  P
Sbjct: 122 KVDLTRKDKLLTLATDLNAKLTFDETFFIAASSGDGVPEL----KAHLAGMMPEGPWHFP 177


>gi|295094544|emb|CBK83635.1| iron-only hydrogenase maturation protein HydF [Coprococcus sp.
           ART55/1]
          Length = 411

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 13/150 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKSSL NA+  + +A+V+D+ GTT D +   ++L     V I DT G
Sbjct: 10  NRVHIGFFGCRNAGKSSLVNAVTGQSLAVVSDVAGTTTDPVYKSMELLPLGPVVIIDTPG 69

Query: 277 IRETDDIVE--KEGIKRTFLEVENADLIL-----LLKEINSKKEISFPKNIDFIFIGTKS 329
           I +T ++ E      ++   +++ A L++     L        E+   KNI++I    KS
Sbjct: 70  IDDTGELGELRVSKTRQVLAKIDVAVLVVDGSVGLSAADRELTELFKEKNINYIIAYNKS 129

Query: 330 DLYS-----TYTEEYDHLISSFTGEGLEEL 354
           DL         + E    +S+   +G+EEL
Sbjct: 130 DLVKDDIQVQNSAENSIWVSAERRQGIEEL 159


>gi|257063791|ref|YP_003143463.1| GTP-binding proten HflX [Slackia heliotrinireducens DSM 20476]
 gi|256791444|gb|ACV22114.1| GTP-binding proten HflX [Slackia heliotrinireducens DSM 20476]
          Length = 433

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 33/190 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +K+   G++NAGKSSL N L   +V     +   +  TTR ++      EG  V I+DT 
Sbjct: 214 FKVAEAGYTNAGKSSLLNRLTNAEVLSYDKLFATLDSTTRKLVLP----EGREVTITDTV 269

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSK---KE 313
           G  +       E    T  E+  ADLI+                    L++I ++   + 
Sbjct: 270 GFIQKLPTTLVEAFNSTLDEIRGADLIMHVVDASSNERDLQMNAVGDTLEQIGAQDIPRL 329

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           + F K ID +  G ++ L S Y      L+S+ TGEG++ LI+ +   ++ + + +   +
Sbjct: 330 VVFNK-IDLVDEGDRAILASRYPMAI--LVSAETGEGIDGLIDALARAVAAQEELMDVLV 386

Query: 374 PSHKRHLYHL 383
           P  K  +  L
Sbjct: 387 PYSKGSVVSL 396


>gi|315499945|ref|YP_004088748.1| gtp-binding protein era [Asticcacaulis excentricus CB 48]
 gi|315417957|gb|ADU14597.1| GTP-binding protein Era [Asticcacaulis excentricus CB 48]
          Length = 323

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 3/102 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+   I+G  NAGKS+L NAL    V+IVT    TTR  V  I +  +  +V + DT 
Sbjct: 12  RAGFA-AIIGAPNAGKSTLVNALVGSKVSIVTQKVQTTRFPVRGIAIHGKAQIVLV-DTP 69

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           GI +    +++  +K  +   E+AD++++L +  +   + FP
Sbjct: 70  GIFKPRRRLDRAMVKSAWGGAEDADIVVMLIDAPAHLAVHFP 111


>gi|220917487|ref|YP_002492791.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955341|gb|ACL65725.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 688

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +++     ++++G+ N GKS LF AL  K V  V++ PGTT +V      +EG    + D
Sbjct: 20  QVVSAARSVILVGNPNVGKSVLFGALTGKYVT-VSNYPGTTVEVTRGSATIEGRPWHVMD 78

Query: 274 TAGIRETDDIVEKEGIKRTFLEVEN 298
           T G      + E E + R  L VE 
Sbjct: 79  TPGTNNLLPMSEDEQVTRDILLVER 103


>gi|56752391|ref|YP_173092.1| hypothetical protein syc2382_d [Synechococcus elongatus PCC 6301]
 gi|56687350|dbj|BAD80572.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 513

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 110/253 (43%), Gaps = 26/253 (10%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKL--------GEIIRNGYKIVILGHSNAGKSS 234
           +V+  +++E L  +    N I+  I++  L         E+ R   ++VI G  +AGK+S
Sbjct: 82  EVKAEAAEENLKAVQQQVNQIADEIAREALLERSRQIAAELERGELRVVIFGTGSAGKTS 141

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVE-KEGIKR 291
           L NAL  + V  V    G+T +  T  L L G    + I+DT GI E       +E + R
Sbjct: 142 LINALLGRIVGKVEATMGSTEEGRTYRLGLRGVGRDILITDTPGILEAGVAGRLREKLAR 201

Query: 292 TFLEVENADLILLLKEINSKKEISFPKNIDFIFIG-------TKSDLYSTYTEEYDHLIS 344
             L VE ADL+L + + N  +       +D   IG        K+DLY     E    I 
Sbjct: 202 Q-LAVE-ADLLLFVVD-NDLRRSELEPCLDLARIGKRSLLIFNKADLYEDRDREA---IL 255

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           +   E L+ LI     IL+      P  +P           T     MA++   + G D+
Sbjct: 256 ARLRERLKGLIPP-SDILTAIASPQPVRLPDGSFLQPEPEVTTLLKRMAAVLRSE-GEDL 313

Query: 405 IAENLRLASVSLG 417
           IA+N+ L S  LG
Sbjct: 314 IADNILLQSQRLG 326


>gi|312196768|ref|YP_004016829.1| ribosome-associated GTPase EngA [Frankia sp. EuI1c]
 gi|311228104|gb|ADP80959.1| ribosome-associated GTPase EngA [Frankia sp. EuI1c]
          Length = 438

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D +  G    + DT G
Sbjct: 2   LAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDANWSGRRFTLVDTGG 56



 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSS+ N LA ++ A+V D+ GTTRD +   + + G      DTAG+R 
Sbjct: 175 RVALVGRPNVGKSSMLNRLAGEERALVHDVAGTTRDPVDELVTVGGEQWLFIDTAGLRR 233


>gi|81300518|ref|YP_400726.1| small GTP-binding protein domain-containing protein [Synechococcus
           elongatus PCC 7942]
 gi|81169399|gb|ABB57739.1| Small GTP-binding protein domain [Synechococcus elongatus PCC 7942]
          Length = 513

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 110/253 (43%), Gaps = 26/253 (10%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKL--------GEIIRNGYKIVILGHSNAGKSS 234
           +V+  +++E L  +    N I+  I++  L         E+ R   ++VI G  +AGK+S
Sbjct: 82  EVKAEAAEENLKAVQQQVNQIADEIAREALLERSRQIAAELERGELRVVIFGTGSAGKTS 141

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVE-KEGIKR 291
           L NAL  + V  V    G+T +  T  L L G    + I+DT GI E       +E + R
Sbjct: 142 LINALLGRIVGKVEATMGSTEEGQTYRLGLRGVGRDILITDTPGILEAGVAGRLREKLAR 201

Query: 292 TFLEVENADLILLLKEINSKKEISFPKNIDFIFIG-------TKSDLYSTYTEEYDHLIS 344
             L VE ADL+L + + N  +       +D   IG        K+DLY     E    I 
Sbjct: 202 Q-LAVE-ADLLLFVVD-NDLRRSELEPCLDLARIGKRSLLIFNKADLYEDRDREA---IL 255

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           +   E L+ LI     IL+      P  +P           T     MA++   + G D+
Sbjct: 256 ARLRERLKGLIPP-SDILTAIASPQPVRLPDGSFLQPEPEVTTLLKRMAAVLRSE-GEDL 313

Query: 405 IAENLRLASVSLG 417
           IA+N+ L S  LG
Sbjct: 314 IADNILLQSQRLG 326


>gi|15608851|ref|NP_216229.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Rv]
 gi|15841173|ref|NP_336210.1| GTP-binding protein EngA [Mycobacterium tuberculosis CDC1551]
 gi|31792900|ref|NP_855393.1| GTP-binding protein EngA [Mycobacterium bovis AF2122/97]
 gi|121637621|ref|YP_977844.1| GTP-binding protein EngA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148661511|ref|YP_001283034.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Ra]
 gi|148822919|ref|YP_001287673.1| GTP-binding protein EngA [Mycobacterium tuberculosis F11]
 gi|167967183|ref|ZP_02549460.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Ra]
 gi|215403983|ref|ZP_03416164.1| GTP-binding protein EngA [Mycobacterium tuberculosis 02_1987]
 gi|215411361|ref|ZP_03420169.1| GTP-binding protein EngA [Mycobacterium tuberculosis 94_M4241A]
 gi|215445899|ref|ZP_03432651.1| GTP-binding protein EngA [Mycobacterium tuberculosis T85]
 gi|218753421|ref|ZP_03532217.1| GTP-binding protein EngA [Mycobacterium tuberculosis GM 1503]
 gi|224990096|ref|YP_002644783.1| GTP-binding protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799248|ref|YP_003032249.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 1435]
 gi|254231909|ref|ZP_04925236.1| GTP-binding protein engA [Mycobacterium tuberculosis C]
 gi|254364552|ref|ZP_04980598.1| GTP-binding protein engA [Mycobacterium tuberculosis str. Haarlem]
 gi|254550724|ref|ZP_05141171.1| GTP-binding protein EngA [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260186666|ref|ZP_05764140.1| GTP-binding protein EngA [Mycobacterium tuberculosis CPHL_A]
 gi|260204983|ref|ZP_05772474.1| GTP-binding protein EngA [Mycobacterium tuberculosis K85]
 gi|289447328|ref|ZP_06437072.1| GTP-binding protein engA [Mycobacterium tuberculosis CPHL_A]
 gi|289554514|ref|ZP_06443724.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 605]
 gi|289574381|ref|ZP_06454608.1| GTP-binding protein engA [Mycobacterium tuberculosis K85]
 gi|289745849|ref|ZP_06505227.1| GTP-binding protein engA [Mycobacterium tuberculosis 02_1987]
 gi|289757822|ref|ZP_06517200.1| GTP-binding protein [Mycobacterium tuberculosis T85]
 gi|289761869|ref|ZP_06521247.1| GTP-binding protein engA [Mycobacterium tuberculosis GM 1503]
 gi|294993177|ref|ZP_06798868.1| GTP-binding protein EngA [Mycobacterium tuberculosis 210]
 gi|297634266|ref|ZP_06952046.1| GTP-binding protein EngA [Mycobacterium tuberculosis KZN 4207]
 gi|297731253|ref|ZP_06960371.1| GTP-binding protein EngA [Mycobacterium tuberculosis KZN R506]
 gi|298525211|ref|ZP_07012620.1| GTP-binding protein engA [Mycobacterium tuberculosis 94_M4241A]
 gi|306775899|ref|ZP_07414236.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu001]
 gi|306779717|ref|ZP_07418054.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu002]
 gi|306788817|ref|ZP_07427139.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu004]
 gi|306793153|ref|ZP_07431455.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu005]
 gi|306797532|ref|ZP_07435834.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu006]
 gi|306803413|ref|ZP_07440081.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu008]
 gi|306967812|ref|ZP_07480473.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu009]
 gi|306972008|ref|ZP_07484669.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu010]
 gi|307084298|ref|ZP_07493411.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu012]
 gi|313658585|ref|ZP_07815465.1| GTP-binding protein Der [Mycobacterium tuberculosis KZN V2475]
 gi|54037050|sp|P64058|DER_MYCBO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|54040974|sp|P64057|DER_MYCTU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225826|sp|A1KJD0|DER_MYCBP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225827|sp|A5U372|DER_MYCTA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783160|sp|C1ANY6|DER_MYCBT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|2326756|emb|CAB10970.1| PROBABLE GTP-BINDING PROTEIN ENGA [Mycobacterium tuberculosis
           H37Rv]
 gi|13881394|gb|AAK46024.1| GTP-binding protein [Mycobacterium tuberculosis CDC1551]
 gi|31618491|emb|CAD94443.1| PROBABLE GTP-BINDING PROTEIN ENGA [Mycobacterium bovis AF2122/97]
 gi|121493268|emb|CAL71739.1| Probable GTP-binding protein engA [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124600968|gb|EAY59978.1| GTP-binding protein engA [Mycobacterium tuberculosis C]
 gi|134150066|gb|EBA42111.1| GTP-binding protein engA [Mycobacterium tuberculosis str. Haarlem]
 gi|148505663|gb|ABQ73472.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Ra]
 gi|148721446|gb|ABR06071.1| GTP-binding protein engA [Mycobacterium tuberculosis F11]
 gi|224773209|dbj|BAH26015.1| GTP-binding protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320751|gb|ACT25354.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 1435]
 gi|289420286|gb|EFD17487.1| GTP-binding protein engA [Mycobacterium tuberculosis CPHL_A]
 gi|289439146|gb|EFD21639.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 605]
 gi|289538812|gb|EFD43390.1| GTP-binding protein engA [Mycobacterium tuberculosis K85]
 gi|289686377|gb|EFD53865.1| GTP-binding protein engA [Mycobacterium tuberculosis 02_1987]
 gi|289709375|gb|EFD73391.1| GTP-binding protein engA [Mycobacterium tuberculosis GM 1503]
 gi|289713386|gb|EFD77398.1| GTP-binding protein [Mycobacterium tuberculosis T85]
 gi|298495005|gb|EFI30299.1| GTP-binding protein engA [Mycobacterium tuberculosis 94_M4241A]
 gi|308215649|gb|EFO75048.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu001]
 gi|308327367|gb|EFP16218.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu002]
 gi|308334633|gb|EFP23484.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu004]
 gi|308338420|gb|EFP27271.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu005]
 gi|308342143|gb|EFP30994.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu006]
 gi|308349930|gb|EFP38781.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu008]
 gi|308354551|gb|EFP43402.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu009]
 gi|308358528|gb|EFP47379.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu010]
 gi|308366087|gb|EFP54938.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu012]
 gi|323719804|gb|EGB28918.1| GTP-binding protein engA [Mycobacterium tuberculosis CDC1551A]
 gi|326903328|gb|EGE50261.1| GTP-binding protein engA [Mycobacterium tuberculosis W-148]
 gi|328459000|gb|AEB04423.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 4207]
          Length = 463

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD +  D    G    + DT G     
Sbjct: 29  VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 88

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++   ++  + +  AD ++L+
Sbjct: 89  KGLQRLVAEQASVAMRTADAVILV 112



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N LA    ++V +  GTT D +   ++L G + +  DTAG+R 
Sbjct: 201 RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRR 259


>gi|198283250|ref|YP_002219571.1| GTP-binding protein Era [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666809|ref|YP_002425833.1| GTP-binding protein Era [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247771|gb|ACH83364.1| GTP-binding protein Era [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519022|gb|ACK79608.1| GTP-binding protein Era [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 304

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLE 265
           I  G   E  R+GY + +LG  N GKS+L N L  + ++I    P TTRD +L I    +
Sbjct: 4   IKSGAPDEGYRSGY-VALLGRPNVGKSTLLNHLVGQKISITAPRPQTTRDQILGILTRPD 62

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           G L+ + DT G+      + +  ++ T   +E+ADL +L+ E
Sbjct: 63  GQLLFL-DTPGVHSGYRSLNRHLLRATRGALESADLGVLVVE 103


>gi|197122704|ref|YP_002134655.1| small GTP-binding protein [Anaeromyxobacter sp. K]
 gi|196172553|gb|ACG73526.1| small GTP-binding protein [Anaeromyxobacter sp. K]
          Length = 688

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +++     ++++G+ N GKS LF AL  K V  V++ PGTT +V      +EG    + D
Sbjct: 20  QVVSAARSVILVGNPNVGKSVLFGALTGKYVT-VSNYPGTTVEVTRGSATIEGRPWHVMD 78

Query: 274 TAGIRETDDIVEKEGIKRTFLEVEN 298
           T G      + E E + R  L VE 
Sbjct: 79  TPGTNNLLPMSEDEQVTRDILLVER 103


>gi|298245801|ref|ZP_06969607.1| GTP-binding proten HflX [Ktedonobacter racemifer DSM 44963]
 gi|297553282|gb|EFH87147.1| GTP-binding proten HflX [Ktedonobacter racemifer DSM 44963]
          Length = 433

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 23/207 (11%)

Query: 199 LKNDISSHISQGKLG--EIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           L+ +I    SQ  L   + +  G  +V ++G++NAGKS+LFNAL +  V +  D    T 
Sbjct: 189 LRKEIEEARSQRALQRKQRVAQGLPVVAVVGYTNAGKSTLFNALTEAGV-LAEDKLFATL 247

Query: 256 DVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D +T  L L       +SDT G  +          + T  EV  ADL+L + +I+ +   
Sbjct: 248 DPVTRRLLLPNNQEALLSDTVGFIQKLPTQLIAAFRATLEEVIEADLLLEVVDISHENAF 307

Query: 315 SFPKNIDFIF--IGTKSDLYSTYTEEYDHL----------------ISSFTGEGLEELIN 356
              + +  I   +G  +    T   + D L                IS+  G+GLEEL  
Sbjct: 308 EQSETVHDILDELGAAAKPRVTALNKIDLLTDPDALDPSLYSHAVPISAAEGKGLEELCA 367

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHL 383
           ++ S+L++  ++L   +P  +  L  L
Sbjct: 368 EVASVLADTMEQLTVLLPFSRGDLVEL 394


>gi|215430606|ref|ZP_03428525.1| GTP-binding protein EngA [Mycobacterium tuberculosis EAS054]
 gi|219557637|ref|ZP_03536713.1| GTP-binding protein EngA [Mycobacterium tuberculosis T17]
 gi|289569764|ref|ZP_06449991.1| GTP-binding protein engA [Mycobacterium tuberculosis T17]
 gi|289753804|ref|ZP_06513182.1| GTP-binding protein EngA [Mycobacterium tuberculosis EAS054]
 gi|289543518|gb|EFD47166.1| GTP-binding protein engA [Mycobacterium tuberculosis T17]
 gi|289694391|gb|EFD61820.1| GTP-binding protein EngA [Mycobacterium tuberculosis EAS054]
          Length = 463

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD +  D    G    + DT G     
Sbjct: 29  VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 88

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++   ++  + +  AD ++L+
Sbjct: 89  KGLQRLVAEQASVAMRTADAVILV 112



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N LA    ++V +  GTT D +   ++L G + +  DTAG+R 
Sbjct: 201 RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRR 259


>gi|222529401|ref|YP_002573283.1| GTP-binding protein Era [Caldicellulosiruptor bescii DSM 6725]
 gi|312622365|ref|YP_004023978.1| GTP-binding protein era [Caldicellulosiruptor kronotskyensis 2002]
 gi|254783286|sp|B9MS56|ERA_ANATD RecName: Full=GTPase Era
 gi|222456248|gb|ACM60510.1| GTP-binding protein Era [Caldicellulosiruptor bescii DSM 6725]
 gi|312202832|gb|ADQ46159.1| GTP-binding protein Era [Caldicellulosiruptor kronotskyensis 2002]
          Length = 300

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 31/208 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + ++G  N GKS+L N L  K ++I++  P TTR+ +   L LE   +   DT G
Sbjct: 4   KSGF-VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFPKNIDFI 323
           +    + + +  +K +   ++  DLIL + E             I   KE+  PK    I
Sbjct: 63  VHPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIERLKEVETPK----I 118

Query: 324 FIGTKSDLYSTYTEE-----------YDHL--ISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  KSDL S    E           ++ +  I++  G   + L++KIK +L    K   
Sbjct: 119 LVLNKSDLASKENIEILKSIFSTKLNFESIVDIAAINGYNCDLLLDKIKELLPEGPKYYL 178

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398
             + +  R  + +++ +R   + +L+E+
Sbjct: 179 DDMTTDVRESFIVAEIIREKILLNLSEE 206


>gi|148242816|ref|YP_001227973.1| GTP-binding protein Era-like protein [Synechococcus sp. RCC307]
 gi|147851126|emb|CAK28620.1| GTP-binding protein era homolog [Synechococcus sp. RCC307]
          Length = 309

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 24/164 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L  + VAI + +  TTR+ L   L  E   + + DT G
Sbjct: 18  RSGF-VALVGRPNVGKSTLLNQLVGEKVAITSPVAQTTRNRLRAILTTECSQLVLVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL------------------LLKEINSKKEISFPK 318
           I +   ++ +  +K     +   D++L                  LLK I     I   K
Sbjct: 77  IHKPHHLLGERLVKTARNSIGEVDVVLALMDGSEPMGRGDQFVLDLLKSIRQPVVIGLNK 136

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKI 358
             D I    + +L ++Y+E          S+ TG+G   L+  +
Sbjct: 137 Q-DLIAEEQREELNASYSEVLPDAPLLPFSALTGDGCSALVEAL 179


>gi|167037775|ref|YP_001665353.1| GTP-binding protein Era [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167039985|ref|YP_001662970.1| GTP-binding protein Era [Thermoanaerobacter sp. X514]
 gi|256751969|ref|ZP_05492839.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914075|ref|ZP_07131391.1| GTP-binding protein Era [Thermoanaerobacter sp. X561]
 gi|307724692|ref|YP_003904443.1| GTP-binding protein Era [Thermoanaerobacter sp. X513]
 gi|320116190|ref|YP_004186349.1| GTP-binding protein Era [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|226741400|sp|B0KA54|ERA_THEP3 RecName: Full=GTPase Era
 gi|226741401|sp|B0K708|ERA_THEPX RecName: Full=GTPase Era
 gi|166854225|gb|ABY92634.1| GTP-binding protein Era [Thermoanaerobacter sp. X514]
 gi|166856609|gb|ABY95017.1| GTP-binding protein Era [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256749174|gb|EEU62208.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889010|gb|EFK84156.1| GTP-binding protein Era [Thermoanaerobacter sp. X561]
 gi|307581753|gb|ADN55152.1| GTP-binding protein Era [Thermoanaerobacter sp. X513]
 gi|319929281|gb|ADV79966.1| GTP-binding protein Era [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 302

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 6/93 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKS+L NA+ ++ +AI +  P TTR+ +   L  + Y V   DT GI +  
Sbjct: 8   VALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTPGIHKPK 67

Query: 282 DIVEK---EGIKRTFLEVENADLILLLKEINSK 311
             + +   E  KRT  EV   DLIL + E +++
Sbjct: 68  SKLSEFMIEVAKRTLKEV---DLILYMIEPDTE 97


>gi|319892654|ref|YP_004149529.1| GTP-binding protein YqeH, required for biogenesis of 30S ribosome
           subunit [Staphylococcus pseudintermedius HKU10-03]
 gi|317162350|gb|ADV05893.1| GTP-binding protein YqeH, required for biogenesis of 30S ribosome
           subunit [Staphylococcus pseudintermedius HKU10-03]
          Length = 366

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           RNG  + I+G +N GKS+L N L      +K+V   + IPGTT D++ I +D   Y+   
Sbjct: 158 RNGQDVYIVGTTNVGKSTLINKLIEQTVGEKNVVTTSRIPGTTLDMIDIPIDDNHYMY-- 215

Query: 272 SDTAGI 277
            DT GI
Sbjct: 216 -DTPGI 220


>gi|256425495|ref|YP_003126148.1| GTP-binding protein Era [Chitinophaga pinensis DSM 2588]
 gi|256040403|gb|ACU63947.1| GTP-binding protein Era [Chitinophaga pinensis DSM 2588]
          Length = 289

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 19/184 (10%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I G +NAGKS+L NAL  + +AIV+    TTR  +T  +    Y +  SDT GI +    
Sbjct: 9   IFGKANAGKSTLMNALVGEKLAIVSPKVQTTRHRITGVVTTPEYQIVFSDTPGIIDPRYR 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKNIDF----IFIGTKSDLYS---- 333
           + ++ +      +E+AD+ +L+ ++  N ++ +S   ++      I +  KSDL      
Sbjct: 69  LHEKMMGAVKSALEDADVAMLIMDVKDNLEENLSLFASLKLKARTILVLNKSDLLMKEEL 128

Query: 334 ----TYTEEYDH-----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                  EE+       LIS+  G+G+  L+  I  +L       P    + K   + + 
Sbjct: 129 DVLVKKCEEWGKAEKVVLISAMQGKGVPALLQTIVGMLPESEPFYPEDTLTDKSTRFFVG 188

Query: 385 QTVR 388
           + VR
Sbjct: 189 EIVR 192


>gi|164687205|ref|ZP_02211233.1| hypothetical protein CLOBAR_00846 [Clostridium bartlettii DSM
           16795]
 gi|164603629|gb|EDQ97094.1| hypothetical protein CLOBAR_00846 [Clostridium bartlettii DSM
           16795]
          Length = 407

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 24/167 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  NAGKSS+ NA+  +D+AIV+D+ GTT D ++  ++L     V I DT G+   
Sbjct: 14  IGIFGKRNAGKSSVINAITDQDLAIVSDVKGTTTDPVSKAMELLPLGPVMIIDTPGL--- 70

Query: 281 DDIVE--KEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSD 330
           DD+ E  K  +++++  +   D+ +L+         + N+  E    K I +I +  K D
Sbjct: 71  DDVGELGKMRVQKSYQVLNKTDIGILVIDGLVGPTPQDNTLIEKFKEKKIPYIVVMNKLD 130

Query: 331 LYSTYTEEYD-------HLISSFTGEG---LEELINKIKSILSNKFK 367
           L      E           +SS T E    L+ELI K       KF+
Sbjct: 131 LVREKGIELPLEDSPNTMWVSSVTKENIYELKELIAKQAPTDEAKFQ 177


>gi|150018074|ref|YP_001310328.1| small GTP-binding protein [Clostridium beijerinckii NCIMB 8052]
 gi|149904539|gb|ABR35372.1| small GTP-binding protein [Clostridium beijerinckii NCIMB 8052]
          Length = 412

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 31/172 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I + G +NAGKSS+ NAL  ++++IV+D+ GTT D +   ++ L      I DTAG+ + 
Sbjct: 14  IALFGMTNAGKSSIINALTNQEISIVSDVKGTTTDPVYKAIEILPIGPCMIIDTAGLDDE 73

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIGTK 328
            ++ E    K+T   +   D+ L++ +            I+  KE    K I  I I  K
Sbjct: 74  SELGESRK-KKTIEVLSKTDVALVVVDATVGVTENDRSIIDQIKE----KKIPTICIFNK 128

Query: 329 SDLYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILS---NKFK 367
           +D  +   EE   +          +S+    G++EL  KI S++    +KFK
Sbjct: 129 ADKKNIEKEELAEIEKTIGTTVVSVSALNKNGIDELKQKIISVIPDNEDKFK 180


>gi|323464308|gb|ADX76461.1| GTP-binding protein, putative [Staphylococcus pseudintermedius
           ED99]
          Length = 366

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           RNG  + I+G +N GKS+L N L      +K+V   + IPGTT D++ I +D   Y+   
Sbjct: 158 RNGQDVYIVGTTNVGKSTLINKLIEQTVGEKNVVTTSRIPGTTLDMIDIPIDDNHYMY-- 215

Query: 272 SDTAGI 277
            DT GI
Sbjct: 216 -DTPGI 220


>gi|114704716|ref|ZP_01437624.1| GTP-binding protein [Fulvimarina pelagi HTCC2506]
 gi|114539501|gb|EAU42621.1| GTP-binding protein [Fulvimarina pelagi HTCC2506]
          Length = 470

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 33/56 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I I+G  N GKS+LFN L  K +A+V D PG TRD    +  L     +I DTAG+
Sbjct: 4   IAIIGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRRPGEGRLMDLSFEIVDTAGL 59



 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  NAGKS+L N +  ++  +     G TRD ++++ +  G   KI DTAG+R  
Sbjct: 200 RMAIVGRPNAGKSTLVNRMLGEERMLTGPEAGITRDSISVEWEWRGRHFKIFDTAGLRRK 259

Query: 281 DDIVEK 286
             + EK
Sbjct: 260 ARVQEK 265


>gi|227498623|ref|ZP_03928767.1| GTP-binding protein era [Acidaminococcus sp. D21]
 gi|226904079|gb|EEH89997.1| GTP-binding protein era [Acidaminococcus sp. D21]
          Length = 306

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R GY I ++G  NAGKS+L + L  +  AIV+D P TTR+ +   L  E   +   DT G
Sbjct: 9   RAGY-IAVIGRPNAGKSTLIDKLIGEKAAIVSDRPQTTRNRILCILSTEKAQLIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           + +  D + +  +K     +++ D +L + +   K+
Sbjct: 68  LHKPKDKLGEHMVKAAEDSLKDVDAVLYVVDATEKR 103


>gi|88607820|ref|YP_504957.1| GTP-binding protein Era [Anaplasma phagocytophilum HZ]
 gi|88598883|gb|ABD44353.1| GTP-binding protein Era [Anaplasma phagocytophilum HZ]
          Length = 305

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 21/159 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L     +IVT+   TTR  +   L+     +  +DT GI    
Sbjct: 22  VAVVGMTNAGKSTLINKLVGFKASIVTNKVHTTRVKMNSVLNEGNVQLVFTDTPGIFSPK 81

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDL-- 331
             +EK  +K  ++ ++ AD+++L+ +   +  +   K        N+  I +  K DL  
Sbjct: 82  TKLEKFIVKNAWMSMKGADMVILVLDAKRRICVHVEKIIKRLQRDNVASIAVINKMDLLD 141

Query: 332 ---YSTYTEEYDHL--------ISSFTGEGLEELINKIK 359
               +T+ E    L        +SS  G G+ +LI+ ++
Sbjct: 142 EGELATFAERVQLLHKFDRVFTVSSLYGTGVRDLIDYLQ 180


>gi|331086300|ref|ZP_08335380.1| hypothetical protein HMPREF0987_01683 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406066|gb|EGG85589.1| hypothetical protein HMPREF0987_01683 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 405

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I I G  NAGKSSL NAL  +++AIV+DI GTT D +   ++L   G +V I DT G+ +
Sbjct: 14  IGIFGKRNAGKSSLINALTGQNLAIVSDIKGTTTDPVLKSMELLPLGPVVLI-DTPGLDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
              + E   +++T+  +   D+ +L+
Sbjct: 73  HGPLGELR-VQKTYQMLNKTDIAILV 97


>gi|167752992|ref|ZP_02425119.1| hypothetical protein ALIPUT_01255 [Alistipes putredinis DSM 17216]
 gi|167659306|gb|EDS03436.1| hypothetical protein ALIPUT_01255 [Alistipes putredinis DSM 17216]
          Length = 394

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 7/123 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I   G  N+GKSSL NAL  +  A+V+  PGTT D +   +++ G     + DT G  + 
Sbjct: 13  IAFYGRRNSGKSSLINALTGQQSAVVSATPGTTTDPVLKTMEIHGLGPCVLIDTPGFDDE 72

Query: 281 DDI-VEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSDLYST 334
            D+   +    R  L+  +  ++LL   +    EI +      ++I  + + +K+DL++ 
Sbjct: 73  GDLGALRVQQSRKMLDKTDLAVLLLSGAVPQNDEIEWFRLLEARHIPIVVVRSKADLFTG 132

Query: 335 YTE 337
            ++
Sbjct: 133 MSD 135


>gi|119964121|ref|YP_947439.1| GTP-binding protein EngA [Arthrobacter aurescens TC1]
 gi|254783134|sp|A1R5C7|DER_ARTAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|119950980|gb|ABM09891.1| putative GTP-binding protein Era [Arthrobacter aurescens TC1]
          Length = 491

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N LA  +  +V  + GTTRD +   ++L     +  DTAGIR  
Sbjct: 230 RIALIGRPNVGKSSLLNKLAGSERVVVDPLAGTTRDPVDEFIELGDRTWRFVDTAGIRRR 289

Query: 281 DDIVEKEGIK---RTFLEVENADLILLLKEIN 309
             + +        RT   +E A++ ++L  ++
Sbjct: 290 QHMAQGADFYASLRTQAALEKAEVAVVLLAVD 321



 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 21/160 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD +       G    + DT G     
Sbjct: 56  LAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSARWNGRNFTLVDTGGWEHDA 115

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKNI--DFI 323
             +     ++  + VE AD +L + +                  SKK +    N   DF 
Sbjct: 116 KGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEGVMKMLRKSKKPVIMVANKVDDFA 175

Query: 324 FIGTKSDLYS-TYTEEYDHLISSFTGEGLEELINKIKSIL 362
                + L+   + E Y   +S+  G G+ +L++ +   L
Sbjct: 176 QEADSATLWGLGFGEPYP--VSALHGRGVADLLDHVMDTL 213


>gi|56551244|ref|YP_162083.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542818|gb|AAV88972.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 460

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 36/186 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280
           + ++G++NAGKS+LFN +   DV +  D+   T D     + L G    I SDT G    
Sbjct: 211 VALVGYTNAGKSTLFNRMTGADV-MAKDLLFATLDPTMRQITLPGIDKAILSDTVGF--V 267

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IG---------- 326
            D+  +     + T  EV  ADLIL +++I  +   S  ++++ +   IG          
Sbjct: 268 SDLPTQLVAAFRATLEEVTAADLILHVRDIAQEDSESEREDVERVLAEIGIAPVEDGGEF 327

Query: 327 --------TKSDLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKK 368
                    KSDL S    E             LIS++TGEG+E+L   +   LS   + 
Sbjct: 328 AIPVIEAWNKSDLLSEEAHESLAAEAARRDDVALISAWTGEGIEDLRELVSQRLSEAHRL 387

Query: 369 LPFSIP 374
               IP
Sbjct: 388 RHIDIP 393


>gi|330467062|ref|YP_004404805.1| GTP-binding protein Der [Verrucosispora maris AB-18-032]
 gi|328810033|gb|AEB44205.1| GTP-binding protein Der [Verrucosispora maris AB-18-032]
          Length = 467

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D    G    + DT G
Sbjct: 27  VAVVGRPNVGKSTLVNRIIGRRQAVVEDVPGVTRDRIPYDAQWSGRSFTVVDTGG 81



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   ++ ++G  N GKSSL N  + ++ A+V  + GTT D +   + + G    + DTAG
Sbjct: 196 RGPRRVALVGRPNVGKSSLLNRFSGEERAVVDSVAGTTVDPVDSLVTIGGETWHLVDTAG 255

Query: 277 IRE 279
           +R+
Sbjct: 256 LRK 258


>gi|225631158|ref|ZP_03787866.1| GTP-binding protein Era [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591145|gb|EEH12319.1| GTP-binding protein Era [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 294

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 33/170 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G  NAGKS+L N++  K +AIVT    TTR  +          V  +D+ GI   +
Sbjct: 9   VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQVVFTDSPGIFSAE 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID---------------FIFIG 326
             +EK  ++  +  V+++D+ LLL +++      + KNI+                I + 
Sbjct: 69  TKLEKALVRSAWSAVKDSDITLLLVDVS-----HYLKNIERIKTIFMRLQRTKGRCILVI 123

Query: 327 TKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILS 363
            K+DL                Y  E   +IS+   +GL +L+N +  + S
Sbjct: 124 NKTDLVKRPELKMAHEHLNLLYKFEKVFMISALKNDGLSDLMNYLSEVAS 173


>gi|28210676|ref|NP_781620.1| ferrous iron transport protein B [Clostridium tetani E88]
 gi|28203114|gb|AAO35557.1| ferrous iron transport protein B [Clostridium tetani E88]
          Length = 587

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY---LVKISDTAGIR 278
           + ++G+ N GK+SLFNAL   +   V +  G T +        EGY   LVKI D  GI 
Sbjct: 4   VALVGNPNVGKTSLFNALTGSN-QYVGNWAGVTVE------KKEGYIDNLVKIVDLPGIY 56

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
             D    +E + + +L  EN D+IL
Sbjct: 57  AMDTYSNEEKVSKNYLSTENIDVIL 81


>gi|86157990|ref|YP_464775.1| small GTP-binding protein domain-containing protein
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774501|gb|ABC81338.1| small GTP-binding protein domain protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 688

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +++     ++++G+ N GKS LF AL  K V  V++ PGTT +V      +EG    + D
Sbjct: 20  QVVAAARSVILVGNPNVGKSVLFGALTGKYVT-VSNYPGTTVEVTRGSATIEGRPWHVMD 78

Query: 274 TAGIRETDDIVEKEGIKRTFLEVEN 298
           T G      + E E + R  L VE 
Sbjct: 79  TPGTNNLLPMSEDEQVTRDILLVER 103


>gi|108804343|ref|YP_644280.1| GTP-binding protein Era [Rubrobacter xylanophilus DSM 9941]
 gi|108765586|gb|ABG04468.1| GTP-binding protein Era [Rubrobacter xylanophilus DSM 9941]
          Length = 301

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 1/100 (1%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           GE  R+G+ + ++G  N GKS+L N L  + ++I++  P TTR  +    +  GY     
Sbjct: 5   GEGFRSGF-VAVVGRPNVGKSTLVNRLVGQKISIISSRPQTTRSPIRGVRNGPGYQAVFV 63

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           DT G ++  D +     +R    +  +D++L + + +  K
Sbjct: 64  DTPGSQKPRDTLRARMQERVLDSLSESDVVLFMLDASQAK 103


>gi|331653414|ref|ZP_08354415.1| conserved hypothetical protein [Escherichia coli M718]
 gi|331048263|gb|EGI20339.1| conserved hypothetical protein [Escherichia coli M718]
          Length = 306

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           I+G S AGKSSL NAL + +V  V+D+   TR+V    L+  G+ + I+D  G+ E+ D
Sbjct: 57  IMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRD 115


>gi|218699419|ref|YP_002407048.1| putative GTP-binding domain [Escherichia coli IAI39]
 gi|218369405|emb|CAR17164.1| conserved hypothetical protein; putative GTP-binding domain
           [Escherichia coli IAI39]
          Length = 311

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           I+G S AGKSSL NAL + +V  V+D+   TR+V    L+  G+ + I+D  G+ E+ D
Sbjct: 62  IMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRD 120


>gi|296117980|ref|ZP_06836563.1| ribosome-associated GTPase EngA [Corynebacterium ammoniagenes DSM
           20306]
 gi|295969211|gb|EFG82453.1| ribosome-associated GTPase EngA [Corynebacterium ammoniagenes DSM
           20306]
          Length = 539

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N    +  A+V D PG TRD ++   D  G    + DT G     
Sbjct: 106 VAIVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRISYIGDWNGQRFFVQDTGGWDPNA 165

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++  + +E AD+I+ +
Sbjct: 166 KGIHGAIARQAEVAMETADVIVFV 189



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 15/130 (11%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           +VL+++L L  +   H S      I     ++ ++G  N GKSSL N +  ++ ++V ++
Sbjct: 254 DVLDEVLKLFPEQPRHSS------ITAGPRRVALVGKPNVGKSSLLNKITGQERSVVDNV 307

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLL 305
            GTT D +   + L+  L +  DTAG+R+   +   +G +     RT   ++ A++ ++L
Sbjct: 308 SGTTVDPVDSLVQLDKQLWRFVDTAGLRKK--VKNAQGHEYYASLRTRGVIDAAEVCVML 365

Query: 306 KEINSKKEIS 315
             I++ +EIS
Sbjct: 366 --IDASQEIS 373


>gi|83589464|ref|YP_429473.1| GTP-binding protein Era [Moorella thermoacetica ATCC 39073]
 gi|83572378|gb|ABC18930.1| GTP-binding protein Era [Moorella thermoacetica ATCC 39073]
          Length = 301

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  R+G+  +I G  NAGKS+L N L  + VAI++D P TTR+ +   L    Y +  
Sbjct: 1   MAEAYRSGFAGLI-GRPNAGKSTLLNRLVGRKVAIMSDKPQTTRNKILGVLTATAYQIVF 59

Query: 272 SDTAGI 277
            DT GI
Sbjct: 60  LDTPGI 65


>gi|189218239|ref|YP_001938881.1| GTP-binding protein protease modulator [Methylacidiphilum
           infernorum V4]
 gi|189185097|gb|ACD82282.1| GTP-binding protein protease modulator [Methylacidiphilum
           infernorum V4]
          Length = 432

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 20/171 (11%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G++NAGKS+LFN L    V +   +  T    + +     GY + +SDT G  +    
Sbjct: 204 LVGYTNAGKSTLFNRLTNAHVLVEDKLFATLDPTIRLFEFSGGYKIFLSDTVGFIQKLPH 263

Query: 284 VEKEGIKRTFLEVENADLILLL------------KEINSKKEISFPKNIDFIFIGTKSDL 331
              E  K T  EV  ADL++ L             E+N   E     +   I +  K DL
Sbjct: 264 HLIESFKATLEEVTEADLLIHLVDVSHPWAETQINEVNKVLEQIGAIHKPTILVWNKIDL 323

Query: 332 YST------YTEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            +T        EEY     IS+ TG G E L+ KI+  L ++ + L   +P
Sbjct: 324 VNTSGLIKRRIEEYPGSVPISAATGFGCENLLVKIEEWLKSQRRFLSLKLP 374


>gi|256832283|ref|YP_003161010.1| GTP-binding proten HflX [Jonesia denitrificans DSM 20603]
 gi|256685814|gb|ACV08707.1| GTP-binding proten HflX [Jonesia denitrificans DSM 20603]
          Length = 509

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 30/181 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + I+G++NAGKSSL NAL    V    A+   +  T R   T D    G +  ++DT G 
Sbjct: 289 VAIVGYTNAGKSSLLNALTGAGVLVQNALFATLDPTVRRTKTPD----GRVYTLADTVGF 344

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKK----EISFPKNIDFI 323
           +R     +  E  + T  E  +AD+I+ +          +I + +    +I    +I  I
Sbjct: 345 VRHLPHQL-VEAFRSTLEETADADIIVHVVDGAHPDPAGQIAAVRTVLADIDGVSDIPEI 403

Query: 324 FIGTKSDLYST------YTEEYD-HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            +  K+D+          + E D   +S+ TG G+EEL+  I  IL     ++  ++P H
Sbjct: 404 IVVNKADIAPPEAIAQIRSMERDVWAVSAHTGAGIEELLGHIADILPAPGVEIHLTVPYH 463

Query: 377 K 377
           +
Sbjct: 464 R 464


>gi|227504288|ref|ZP_03934337.1| GTP-binding protein EngA [Corynebacterium striatum ATCC 6940]
 gi|227199127|gb|EEI79175.1| GTP-binding protein EngA [Corynebacterium striatum ATCC 6940]
          Length = 541

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 6/89 (6%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           +VL++IL L  +   H S      I     ++ ++G  N GKSSL N L  ++ ++V + 
Sbjct: 254 DVLDEILRLFPEEPRHAS------ITSGPRRVALVGKPNVGKSSLLNKLTSEERSVVDNA 307

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            GTT D +   + L+  L K  DTAG+R+
Sbjct: 308 AGTTVDPVDSLVQLDQRLWKFIDTAGLRK 336



 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N    +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 106 VAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVAEWNGQRFFVQDTGGWDPNV 165

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++  L +  AD+I+ +
Sbjct: 166 KGIHAAIARQAELAMNTADVIVFV 189


>gi|293400673|ref|ZP_06644818.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305699|gb|EFE46943.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 301

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ I I+G  NAGKS+L NAL  + +AI T  P TTR+ ++  L  E      +DT G
Sbjct: 4   KSGF-IAIIGRPNAGKSTLLNALLNEKIAITTPKPQTTRNNISGILTREDAQFIFTDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADL 301
           I +    + K   +  +  +  AD+
Sbjct: 63  IHKPKHELGKTLNRNAYTAIAEADV 87


>gi|162148045|ref|YP_001602506.1| GTP-binding protein hflX [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786622|emb|CAP56204.1| GTP-binding protein hflX [Gluconacetobacter diazotrophicus PAl 5]
          Length = 428

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 29/179 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFNAL    V    D    T D     + L  G  + +SDT G    
Sbjct: 204 VALVGYTNAGKSTLFNALTGATV-FAQDQLFATLDPTMRGIRLPSGRRIILSDTVGF--I 260

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG------------ 326
            D+  +     + T  EV  AD+IL +++I+     +   +++ +  G            
Sbjct: 261 SDLPTELIAAFRATLEEVAEADVILHVRDISHPDSAAQRADVEDVLEGMAGSGTLEDDWR 320

Query: 327 -------TKSDLY----STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                   K+DL     +    +   +IS+ TGEGL +L+  I S L+   + + ++IP
Sbjct: 321 RRVIEVQNKADLIGGRDAVPPRKGSVVISAITGEGLPDLLAAIDSRLTEAMETVRYTIP 379


>gi|331697587|ref|YP_004333826.1| GTP-binding protein engA [Pseudonocardia dioxanivorans CB1190]
 gi|326952276|gb|AEA25973.1| GTP-binding protein engA [Pseudonocardia dioxanivorans CB1190]
          Length = 486

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 42/84 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  +  A+V D+PG TRD ++ D    G    + DT G     
Sbjct: 49  LAVVGRPNVGKSTLVNRLIGRREAVVQDVPGVTRDRISYDALWNGRRFTLVDTGGWEPDA 108

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++     +  L +  AD ++L+
Sbjct: 109 TGLQGAVAAQAELAMRTADAVMLV 132



 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 39/59 (66%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N ++ +  ++V D+ GTT D +   ++L+G + +  DTAG+R+
Sbjct: 223 RVALVGKPNVGKSSLLNKVSGELRSVVHDVAGTTVDPVDSLVELDGEIWRFVDTAGLRK 281


>gi|307266976|ref|ZP_07548493.1| GTP-binding protein Era [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918025|gb|EFN48282.1| GTP-binding protein Era [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 302

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 6/93 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKS+L NA+ ++ +AI +  P TTR+ +   L  + Y V   DT GI +  
Sbjct: 8   VALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIHGILTTDEYQVIFVDTPGIHKPK 67

Query: 282 DIVEK---EGIKRTFLEVENADLILLLKEINSK 311
             + +   E  KRT  EV   DLIL + E +++
Sbjct: 68  SKLSEFMIEVAKRTLKEV---DLILYMIEPDTE 97


>gi|294786930|ref|ZP_06752184.1| ribosome-associated GTPase EngA [Parascardovia denticolens F0305]
 gi|315226567|ref|ZP_07868355.1| ribosome-associated GTPase EngA [Parascardovia denticolens DSM
           10105]
 gi|294485763|gb|EFG33397.1| ribosome-associated GTPase EngA [Parascardovia denticolens F0305]
 gi|315120699|gb|EFT83831.1| ribosome-associated GTPase EngA [Parascardovia denticolens DSM
           10105]
          Length = 734

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I ++G  N GKS+L N +     AIV D PG TRD ++ + +  G+  K+ DT G
Sbjct: 287 IAVIGRPNVGKSTLVNRVLGHRAAIVEDTPGVTRDRVSYEAEWAGHDFKLVDTGG 341



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA ++ ++V D+ GTTRD +   I +  E +L    DTAGI+
Sbjct: 461 RVALIGRPNVGKSSLLNQLAHENRSVVNDLAGTTRDPVDEVITIGDEKWL--FIDTAGIK 518

Query: 279 ETDDIVEKEGIK-----RTFLEVENADLILLL 305
               + ++ G       RT   +E ++L L+L
Sbjct: 519 RR--LHKQSGADYYSSLRTQAAIERSELALVL 548


>gi|312793589|ref|YP_004026512.1| gtp-binding protein era [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312875914|ref|ZP_07735904.1| GTP-binding protein Era [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797395|gb|EFR13734.1| GTP-binding protein Era [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180729|gb|ADQ40899.1| GTP-binding protein Era [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 300

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 31/208 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + ++G  N GKS+L N L  K ++I++  P TTR+ +   L LE   +   DT G
Sbjct: 4   KSGF-VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFPKNIDFI 323
           +    + + +  +K +   ++  DLIL + E             I   KE+  PK    I
Sbjct: 63  VHPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIEKLKEVETPK----I 118

Query: 324 FIGTKSDLYSTYTEE-----------YDHL--ISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  KSDL S    E           ++ +  I++  G   + L++KIK +L    K   
Sbjct: 119 LVLNKSDLASKENIEILKSIFSTKLNFESIVDIAAINGYNCDLLLSKIKELLPEGPKYYL 178

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398
             + +  R  + +++ +R   + +L+E+
Sbjct: 179 DDMTTDVRESFIVAEIIREKILLNLSEE 206


>gi|332343774|gb|AEE57108.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 290

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           I+G S AGKSSL NAL + +V  V+D+   TR+V    L+  G+ + I+D  G+ E+ D
Sbjct: 41  IMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRD 99


>gi|326389849|ref|ZP_08211413.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus JW 200]
 gi|325994117|gb|EGD52545.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus JW 200]
          Length = 302

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 6/93 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKS+L NA+ ++ +AI +  P TTR+ +   L  + Y V   DT GI +  
Sbjct: 8   VALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIHGILTTDEYQVIFVDTPGIHKPK 67

Query: 282 DIVEK---EGIKRTFLEVENADLILLLKEINSK 311
             + +   E  KRT  EV   DLIL + E +++
Sbjct: 68  SKLSEFMIEVAKRTLKEV---DLILYMIEPDTE 97


>gi|217077014|ref|YP_002334730.1| GTP-binding protein Era [Thermosipho africanus TCF52B]
 gi|226741399|sp|B7IH25|ERA_THEAB RecName: Full=GTPase Era
 gi|217036867|gb|ACJ75389.1| era GTP-binding protein Era [Thermosipho africanus TCF52B]
          Length = 299

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 76/149 (51%), Gaps = 7/149 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + + G  N GKSS+ NA+  K + IV+D P TTR+ + +    + + +   DT 
Sbjct: 1   MKSGF-VALAGKPNVGKSSIVNAIVGKKILIVSDKPQTTRNRINVIHTTDDFQIIFVDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335
           GI +    + +  +K     ++  DLIL +  +++K+ +  P+   F ++        T 
Sbjct: 60  GIHKPLYRLGEYMVKAAVSALKGVDLILTV--VDAKEGVGKPERFVFDYVNQS----KTK 113

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSN 364
           T    + I     + +E++ N+IK+ L N
Sbjct: 114 TIGVINKIDLVDAKKVEQIYNEIKNSLEN 142


>gi|241760903|ref|ZP_04758992.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|260753127|ref|YP_003226020.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|241374522|gb|EER63983.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|258552490|gb|ACV75436.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 460

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 36/186 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280
           + ++G++NAGKS+LFN +   DV +  D+   T D     + L G    I SDT G    
Sbjct: 211 VALVGYTNAGKSTLFNRMTGADV-MAKDLLFATLDPTMRQIALPGIDKAILSDTVGF--V 267

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IG---------- 326
            D+  +     + T  EV  ADLIL +++I  +   S  ++++ +   IG          
Sbjct: 268 SDLPTQLVAAFRATLEEVTAADLILHVRDIAQEDSESEREDVERVLAEIGIAPVEDGGEF 327

Query: 327 --------TKSDLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKK 368
                    KSDL S    E             LIS++TGEG+E+L   +   LS   + 
Sbjct: 328 AIPVIEAWNKSDLLSEEAHESLAAEAARRDDVALISAWTGEGIEDLRELVSQRLSEAHRL 387

Query: 369 LPFSIP 374
               IP
Sbjct: 388 RHIDIP 393


>gi|258404637|ref|YP_003197379.1| GTP-binding protein EngA [Desulfohalobium retbaense DSM 5692]
 gi|257796864|gb|ACV67801.1| ribosome-associated GTPase EngA [Desulfohalobium retbaense DSM
           5692]
          Length = 441

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + ++G  N GKS+LFN L +K  A+  D PG TRD L  ++        + DT G + + 
Sbjct: 5   VALIGRRNVGKSTLFNRLIRKQKALTHDRPGVTRDRLYAEVPHGEPPFALVDTGGLVLDE 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            D VE +  ++    +E A LIL +  ++ ++ +S
Sbjct: 65  SDGVEADVFEQAREAMEGAQLILFV--VDGRQGVS 97



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 11/122 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ +LG  N GKSSL NAL  +   +V+   GTT D++ +  + +G      D+AG+R  
Sbjct: 183 RLALLGRPNVGKSSLINALVGEKRLVVSPEAGTTTDIVDVLFEKKGKRYIFLDSAGVRRR 242

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISF--PKNIDFIFIGTKS 329
            + DD +E+  + R     + A + +L  +         KK +SF   + I FI    K 
Sbjct: 243 SKIDDSLERFSVLRALRNSKRAQVTVLCLDALQGVVGQDKKLLSFLDREKIPFIVAVNKV 302

Query: 330 DL 331
           DL
Sbjct: 303 DL 304


>gi|209542663|ref|YP_002274892.1| GTP-binding proten HflX [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530340|gb|ACI50277.1| GTP-binding proten HflX [Gluconacetobacter diazotrophicus PAl 5]
          Length = 436

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 29/179 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFNAL    V    D    T D     + L  G  + +SDT G    
Sbjct: 212 VALVGYTNAGKSTLFNALTGATV-FAQDQLFATLDPTMRGIRLPSGRRIILSDTVGF--I 268

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG------------ 326
            D+  +     + T  EV  AD+IL +++I+     +   +++ +  G            
Sbjct: 269 SDLPTELIAAFRATLEEVAEADVILHVRDISHPDSAAQRADVEDVLEGMAGSGTLEDDWR 328

Query: 327 -------TKSDLY----STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                   K+DL     +    +   +IS+ TGEGL +L+  I S L+   + + ++IP
Sbjct: 329 RRVIEVQNKADLIGGRDAVPPRKGSVVISAITGEGLPDLLAAIDSRLTEAMETVRYTIP 387


>gi|114775684|ref|ZP_01451252.1| GTPase [Mariprofundus ferrooxydans PV-1]
 gi|114553795|gb|EAU56176.1| GTPase [Mariprofundus ferrooxydans PV-1]
          Length = 433

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 24/175 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280
           + ++G++NAGKS+LFN L   DV +   +  T    L + L+L G L + +SDT G  + 
Sbjct: 209 VALVGYTNAGKSTLFNRLTTSDVFVANQLFATLDPTLRL-LELPGGLRLMLSDTVGFVQE 267

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI---------------DFIFI 325
                 +  + T  EV  ADLIL +++ +   +    K +                 + I
Sbjct: 268 LPHELVDAFRATLEEVIEADLILHVRDASDPMQAEHAKVVHDTLQQLGVVGDGAPQVVEI 327

Query: 326 GTKSD----LYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
             K D    L S + E        IS+ TGEGL+EL + + S L     +L   +
Sbjct: 328 LNKKDRVPELASFHGEGITTSRLAISALTGEGLDELTDLLGSWLQRDMHELHLRL 382


>gi|194476719|ref|YP_002048898.1| ferrous iron transport protein B [Paulinella chromatophora]
 gi|171191726|gb|ACB42688.1| ferrous iron transport protein B [Paulinella chromatophora]
          Length = 605

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 36/190 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL----TIDLDLEGYLVKISDTAG 276
           ++ +LG  N GKS+LFNAL+    A + + PG T D+L     ID + E   + + D  G
Sbjct: 10  QVALLGMPNTGKSTLFNALSGSH-AHIGNWPGLTVDLLQAEIIIDNNQEEKSIILVDLPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFP-KNIDF--IFIGTKSD 330
           I +     E E + + FL+    DLI+++    +I+ +  ++   +N+    +     SD
Sbjct: 69  IYDLRGFSEDEAVVQRFLDHTPPDLIIIVLNASQIDRQLRLALQIRNLKLPTLVALNMSD 128

Query: 331 LYSTYTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
             + +    DH             IS+  G+GL        S+LS +  +L  ++P+   
Sbjct: 129 EANRFGVNIDHKALSIGLAMQVLPISAKHGQGL--------SLLSQRIWELLLNLPNS-- 178

Query: 379 HLYHLSQTVR 388
              HLSQ +R
Sbjct: 179 ---HLSQNIR 185


>gi|308069435|ref|YP_003871040.1| hypothetical protein PPE_02674 [Paenibacillus polymyxa E681]
 gi|305858714|gb|ADM70502.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 417

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 6/91 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTA 275
           N   IV+LG  NAGKSS+ N L  + VA+V+ + GTT D +   ++L   G +V + DTA
Sbjct: 10  NRPHIVLLGRRNAGKSSILNTLTGQPVAVVSPVGGTTTDPVFKPMELLPAGPIVLV-DTA 68

Query: 276 GIRETDDIVEKEGIKRTFLEVENA-DLILLL 305
           G+ +  +I E    +   LE+ N+ DL LL+
Sbjct: 69  GLDDEGEIGELR--RNKTLEILNSTDLALLV 97


>gi|300957644|ref|ZP_07169838.1| hypothetical protein HMPREF9547_03387 [Escherichia coli MS 175-1]
 gi|300315635|gb|EFJ65419.1| hypothetical protein HMPREF9547_03387 [Escherichia coli MS 175-1]
          Length = 136

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G S AGKSSL NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ 
Sbjct: 50  IGIMGKSGAGKSSLCNALFQGEVTPVSDVYAGTREVQRFRLSGHGHSMVITDLPGVGESR 109

Query: 282 D 282
           D
Sbjct: 110 D 110


>gi|284006627|emb|CBA71888.1| GTP-binding protein [Arsenophonus nasoniae]
          Length = 432

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 30/198 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           I ++G++NAGKSSLFN + K +V     +  T    L  ID+D  G +V ++DT G IR 
Sbjct: 202 ISLVGYTNAGKSSLFNQMTKSEVYAADQLFATLDPTLRRIDIDDVGAIV-LADTVGFIRH 260

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISF-----------PKNIDFIFIG 326
              D+V     K T  E   A L+L ++  ++++ E +               I  + + 
Sbjct: 261 LPHDLV--AAFKATLQETREASLLLHVVDAVDNRMEENIQAVESVLEEIEANEIPALLVM 318

Query: 327 TKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            K D+ + +    D           +S+ TGEG+  L+  +   LS +       +P   
Sbjct: 319 NKIDMLNGFIPRIDRDENNVPIRVWLSAQTGEGIPLLLQALTERLSGEIAHYELRLPPEA 378

Query: 378 ---RHLYHLSQTVRYLEM 392
              R  ++  Q + Y EM
Sbjct: 379 GRLRSRFYQLQAIEYEEM 396


>gi|159484917|ref|XP_001700498.1| ERA-like protein, small ras-type GTPase [Chlamydomonas reinhardtii]
 gi|158272250|gb|EDO98053.1| ERA-like protein, small ras-type GTPase [Chlamydomonas reinhardtii]
          Length = 439

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 10/79 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + ++G  NAGKS+L NAL  + ++IVT  P TTR  +   L    Y + + DT G
Sbjct: 157 RSGY-VAVIGKPNAGKSTLINALVGQKLSIVTYKPQTTRHRVMGILSERDYQMILFDTPG 215

Query: 277 IRETDDIVEKEGIKRTFLE 295
                 ++EK   KRT LE
Sbjct: 216 ------VIEK---KRTKLE 225


>gi|315604800|ref|ZP_07879859.1| GTP-binding protein Era [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313471|gb|EFU61529.1| GTP-binding protein Era [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 402

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D  +EED  +  + E L  +  L+ D ++ I      E  R G+ + I+G  N GKS+L 
Sbjct: 67  DLEDEEDA-DLDAFEALTSLASLREDAAATIEVPDFPEDFRAGF-VSIVGRPNVGKSTLT 124

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           NAL    +AI +  P TTR  +   +  + Y + + DT G
Sbjct: 125 NALVGAKIAITSGRPETTRHNIRGIVHGDNYQLVLVDTPG 164


>gi|158316815|ref|YP_001509323.1| small GTP-binding protein [Frankia sp. EAN1pec]
 gi|158112220|gb|ABW14417.1| small GTP-binding protein [Frankia sp. EAN1pec]
          Length = 462

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 202 DISSHISQGKLGEII--RNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           D+++ +  G +G  +    G  ++ ++G  N GKS+L N +  +  A+V D+PG TRD +
Sbjct: 5   DLAASVDDGPVGGALPLAGGQPVLAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRV 64

Query: 259 TIDLDLEGYLVKISDTAG 276
             D    G    + DT G
Sbjct: 65  AYDAVWNGRRFTLVDTGG 82



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA  + ++V D+ GTTRD +   + + G      DTAG+R  
Sbjct: 201 RVALIGRPNVGKSSLLNKLAGSERSLVHDVAGTTRDPVDELVTVGGETWMFIDTAGLRRR 260

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305
             + E  G +     RT   +E A++ ++L
Sbjct: 261 --VKEASGAEYYSSLRTASALEAAEVAIVL 288


>gi|295109168|emb|CBL23121.1| iron-only hydrogenase maturation protein HydF [Ruminococcus obeum
           A2-162]
          Length = 408

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 18/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I   G  NAGKSS+ NA+  +D+AIV+ + GTT D +   ++L     V I DT GI + 
Sbjct: 14  ISFFGKRNAGKSSVINAVTGQDLAIVSSVRGTTTDPVYKTMELLPLGPVMIIDTPGIDDE 73

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK---EISF-----PKNIDFIFIGTKSDLY 332
            ++     +++++  +   D+ +L+ +  + K   E++       K I ++ +  K DL 
Sbjct: 74  GELGALR-VRKSYQVLNKTDIAILVVDSTTGKGEEELALIHRFHKKGIPYLVVYNKIDLL 132

Query: 333 S--------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           S              + L+S+  G  ++EL  KI ++      K P 
Sbjct: 133 SGEGIKDLAMSVRPGEVLVSAADGMNIQELKEKIATLKPEDTHKYPL 179


>gi|154173760|ref|YP_001408329.1| GTP-binding protein Era [Campylobacter curvus 525.92]
 gi|189037253|sp|A7GYN7|ERA_CAMC5 RecName: Full=GTPase Era
 gi|112803151|gb|EAU00495.1| GTP-binding protein Era [Campylobacter curvus 525.92]
          Length = 289

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R+G+ + I+G +NAGKSSL NAL  + +AIV+     TR  +   +  EG  +   DT 
Sbjct: 1   MRSGF-VSIIGRTNAGKSSLLNALLNEKIAIVSHKQNATRRKINGIVMNEGDQIIFVDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           G+ E++ I+ K  I      + + D ++ +  ++
Sbjct: 60  GLHESEKILNKLMINEAVKSMGDCDAMIFIASVH 93


>gi|254442831|ref|ZP_05056307.1| GTP-binding proten HflX [Verrucomicrobiae bacterium DG1235]
 gi|198257139|gb|EDY81447.1| GTP-binding proten HflX [Verrucomicrobiae bacterium DG1235]
          Length = 435

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 91/208 (43%), Gaps = 39/208 (18%)

Query: 207 ISQGKLGEIIRNGY------------KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           I++ +L E+I++ +             + I+G++NAGKSSL N +   DV +  D    T
Sbjct: 180 ITKKELKEVIQHRHVQRAKRLRKPVPTVAIVGYTNAGKSSLLNTMTDSDV-LAADKLFAT 238

Query: 255 RDVLTIDLDLEG-YLVKISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            D  T  L+L+    V ++DT G   R    +V  E  K T  E   ADL++ + ++ + 
Sbjct: 239 LDPTTRRLELDNSQHVLVTDTVGFVRRLPHRLV--EAFKATLEEAVVADLLIHVVDVTNP 296

Query: 312 -------------KEISFPKNIDFIFIGTKSDLYSTYTEE---YDH----LISSFTGEGL 351
                        KEI   KN   +       L      E   + H     IS+ TGEG+
Sbjct: 297 DAEKHFQTTMEVLKEIEADKNPMLVVFNKIDALEDPSDRERFMFTHKDALYISANTGEGI 356

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRH 379
            EL   I   L+ KFK     IP H+R+
Sbjct: 357 AELKETIAHHLNAKFKSKELLIP-HERY 383


>gi|190571107|ref|YP_001975465.1| GTP-binding protein Era [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019630|ref|ZP_03335436.1| GTP-binding protein Era [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357379|emb|CAQ54813.1| GTP-binding protein Era [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995052|gb|EEB55694.1| GTP-binding protein Era [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 294

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 5/102 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G  NAGKS+L N++  K +AIVT    TTR  +          +  +D+ G+   +
Sbjct: 9   VTIAGLPNAGKSTLINSIVGKKIAIVTPKVQTTRTQVRGVAICNNAQIVFTDSPGVFSAE 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
             +EK  +K  +  V+++D+ LLL ++N     ++ KNI+ I
Sbjct: 69  TNLEKALVKSAWGAVKDSDITLLLVDVN-----NYLKNIERI 105


>gi|293400788|ref|ZP_06644933.1| ribosome biogenesis GTPase YqeH [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305814|gb|EFE47058.1| ribosome biogenesis GTPase YqeH [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 360

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  RN   +V++G +NAGKS++ NAL +K     +  PGTT D   I++D  GY   + D
Sbjct: 157 EHYRNERDVVVMGMANAGKSTMLNALCEKGDLTTSRHPGTTLDFNEINMD--GY--TLYD 212

Query: 274 TAGIRETDDIV 284
           T G+   D ++
Sbjct: 213 TPGLTRMDSLL 223


>gi|261749630|ref|YP_003257316.1| putative cell growth GTP-binding protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497723|gb|ACX84173.1| putative GTP-binding protein (cell growth-related) [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
          Length = 305

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDD 282
           I+G  N GKS+L N+L  +D++I+T  P TTR  +   +D     +  SDT G   +T  
Sbjct: 15  IIGFPNVGKSTLMNSLVGEDLSIITHKPQTTRHRILGIVDKYNAQIIFSDTPGFMIKTAF 74

Query: 283 IVEKEGIKRTFLEVENADLILLLKEI 308
            +++  +K     +E+AD++L   EI
Sbjct: 75  FMQRIMMKYIERSLEDADIVLFTTEI 100


>gi|257470080|ref|ZP_05634172.1| GTP-binding protein Era [Fusobacterium ulcerans ATCC 49185]
 gi|317064304|ref|ZP_07928789.1| GTP binding protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689980|gb|EFS26815.1| GTP binding protein [Fusobacterium ulcerans ATCC 49185]
          Length = 297

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+L        DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNLNNNQYIFIDTPGIHKAK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            ++ +         +++ D+IL L  ++  +EIS
Sbjct: 66  HLLGEYMTNSAIRVLKDVDVILFL--LDGSQEIS 97


>gi|283798881|ref|ZP_06348034.1| GTP-binding protein [Clostridium sp. M62/1]
 gi|291073338|gb|EFE10702.1| GTP-binding protein [Clostridium sp. M62/1]
          Length = 432

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I   G  NAGKSSL NA   +D+A+V+D+ GTT D +   ++L   G  V I DT GI +
Sbjct: 14  ISFFGCRNAGKSSLLNAFTGQDLAVVSDVKGTTTDPVKKSMELLPLGPAV-IIDTPGIDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDL 331
              +  +  +++T   +   D+ +L+ +  +      +E++F    K + ++    K DL
Sbjct: 73  EGSLGGRR-VRKTRQILNMTDIAVLVADSQTGIRKEDRELAFLFQEKEVPYVVAFNKCDL 131

Query: 332 YSTYTEEYDHLISSFTG--EGLEE---LINKIKSILSNKFKKLPFS 372
              +  +     ++ TG  EG+ E     N+  ++LS     LP S
Sbjct: 132 TENHIPDIYKEETNKTGAKEGVPEDRGTENREAAVLSGAAAVLPVS 177


>gi|158423629|ref|YP_001524921.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158330518|dbj|BAF88003.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 311

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 28/192 (14%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG- 266
           ++ +  E  R G+ + +LG  NAGKS+L N L    V+IV+    TTR ++   + LEG 
Sbjct: 7   AEAEGAEPTRCGF-VALLGAPNAGKSTLTNQLVGTKVSIVSHKVQTTRAIVR-GIALEGP 64

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEI 314
             V + DT GI      +E+  +   +    +AD++ LL + N               E+
Sbjct: 65  SQVILVDTPGIFSPKRRLERAMVNTAWTSASDADVVALLVDANRGIDENVESILKPLAEV 124

Query: 315 SFPK-----NIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNK 365
             P+      ID I   T  +L    TE    E   ++S+  G+G    ++ +++  + K
Sbjct: 125 KRPRALILNKIDMIRRDTLLELAQKLTERLSFERVFMVSALKGDG----VDDVRTWFAEK 180

Query: 366 FKKLPFSIPSHK 377
               P+  P  +
Sbjct: 181 VPFGPWLYPEDQ 192


>gi|227833144|ref|YP_002834851.1| cytidylate kinase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454160|gb|ACP32913.1| cytidylate kinase [Corynebacterium aurimucosum ATCC 700975]
          Length = 528

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 15/130 (11%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           +VL++IL L  +   H S      I     ++ ++G  N GKSSL N L  ++ ++V + 
Sbjct: 244 DVLDEILRLFPEEPRHSS------ITSGPRRVALVGKPNVGKSSLLNKLTAEERSVVDNA 297

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLL 305
            GTT D +   + L+  L K  DTAG+R+   +   +G +     RT   ++ A++ ++L
Sbjct: 298 AGTTVDPVDSLVQLDQRLWKFIDTAGLRKK--VKNAQGHEYYASLRTRGVIDAAEVCIML 355

Query: 306 KEINSKKEIS 315
             I++ +E+S
Sbjct: 356 --IDASQEVS 363



 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKSSL N    +  A+V D PG TRD ++   D  G    + DT G
Sbjct: 96  VAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVADWNGQRFFVQDTGG 150


>gi|91229122|ref|ZP_01262895.1| tRNA modification GTPase [Vibrio alginolyticus 12G01]
 gi|91187434|gb|EAS73777.1| tRNA modification GTPase [Vibrio alginolyticus 12G01]
          Length = 153

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
           +S+ TG G+E L + +K  +            + +RHL  L +  ++L++     E    
Sbjct: 56  LSAKTGAGVEALRDHLKECMGFSGNS-EGGFMARRRHLDALERAAQHLQIGQEQLEGYMA 114

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +I+AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 115 GEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 153


>gi|329114580|ref|ZP_08243339.1| GTP-binding protein HflX [Acetobacter pomorum DM001]
 gi|326696060|gb|EGE47742.1| GTP-binding protein HflX [Acetobacter pomorum DM001]
          Length = 439

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 29/179 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFNAL    V     +  T    +  IDL   G  V +SDT G    
Sbjct: 212 VALVGYTNAGKSTLFNALTGATVYAQDQLFATLDPTMRAIDLP-SGRRVILSDTVGF--I 268

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD--LYSTYT 336
            D+  +     + T  EV  AD+IL ++++      +  K++  +  G   D  L   + 
Sbjct: 269 SDLPTELIAAFRATLEEVAEADIILHVRDVAHPDSAAQKKDVLGVLEGMAKDDMLEQDWP 328

Query: 337 E-------EYDHL--------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           E       + D L              IS+ TG+GLE L+ +I + ++   + + + +P
Sbjct: 329 ERIIEVLNKVDLLGGPEAIPQTEDTIAISAITGDGLETLLARIDARITQGMETVRYRLP 387


>gi|326797796|ref|YP_004315615.1| GTP-binding protein Era-like-protein [Sphingobacterium sp. 21]
 gi|326548560|gb|ADZ76945.1| GTP-binding protein Era-like-protein [Sphingobacterium sp. 21]
          Length = 292

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L N+L  + ++IVT    TTR  +   ++ E Y +  SDT G+ +  
Sbjct: 8   VSIVGKPNAGKSTLMNSLVGEKMSIVTPKAQTTRHRILGIVNEEDYQIVFSDTPGVIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
             +++  +      + +AD+IL + +IN K
Sbjct: 68  YSLQESMMNFVHGSLVDADIILFVTDINEK 97


>gi|307109146|gb|EFN57384.1| hypothetical protein CHLNCDRAFT_142788 [Chlorella variabilis]
          Length = 959

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  NAGKSSL N + + + +IV   PGTT D   + ++L      K+ DTAGI E 
Sbjct: 517 IGIFGCMNAGKSSLMNRVTRSETSIVDSTPGTTADTKVVLMELHDVGPAKLFDTAGIDEE 576

Query: 281 DDIVEKEGIKRTFLEV 296
             + EK+  +R  L V
Sbjct: 577 GALGEKK--RRKVLSV 590


>gi|258654174|ref|YP_003203330.1| small GTP-binding protein [Nakamurella multipartita DSM 44233]
 gi|258557399|gb|ACV80341.1| small GTP-binding protein [Nakamurella multipartita DSM 44233]
          Length = 483

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  +  A+V D+PG TRD ++ D    G    + DT G     
Sbjct: 49  LAVVGRPNVGKSTLVNRLIGRREAVVQDVPGVTRDRVSHDALWRGRRFTVVDTGGWDPMA 108

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++ E   +    ++ +D +L++
Sbjct: 109 SGLQAEVTAQAERAMQTSDAVLVV 132



 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 9/100 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N L  +  ++V  + GTT D +   ++++G L +  DTAG+R  
Sbjct: 222 RVALIGRPNVGKSSLLNKLTGESRSVVHAVAGTTVDPVDSLVEIDGQLWRFVDTAGLRRR 281

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315
             + + +G++     RT   +E+A++ + L  I+S   I+
Sbjct: 282 --VNQAKGMEYYASLRTQTALESAEVAIAL--IDSSTPIT 317


>gi|262182365|ref|ZP_06041786.1| GTP-binding protein EngA [Corynebacterium aurimucosum ATCC 700975]
          Length = 537

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           +VL++IL L  +   H S      I     ++ ++G  N GKSSL N L  ++ ++V + 
Sbjct: 253 DVLDEILRLFPEEPRHSS------ITSGPRRVALVGKPNVGKSSLLNKLTAEERSVVDNA 306

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            GTT D +   + L+  L K  DTAG+R
Sbjct: 307 AGTTVDPVDSLVQLDQRLWKFIDTAGLR 334



 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKSSL N    +  A+V D PG TRD ++   D  G    + DT G
Sbjct: 105 VAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVADWNGQRFFVQDTGG 159


>gi|262202714|ref|YP_003273922.1| ribosome-associated GTPase EngA [Gordonia bronchialis DSM 43247]
 gi|262086061|gb|ACY22029.1| ribosome-associated GTPase EngA [Gordonia bronchialis DSM 43247]
          Length = 478

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 42/84 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V DIPG TRD ++      G    + DT G     
Sbjct: 44  LAIVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYAASWSGRRFTVVDTGGWEPDA 103

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++    +  L +  AD I+L+
Sbjct: 104 KGLQQAVAAQAELAMRTADAIVLV 127



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%)

Query: 211 KLGEIIRNG------YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           KL E  R G       ++ ++G  N GKSSL N LA  + ++V ++ GTT D +   ++L
Sbjct: 200 KLPETPREGPALGGPRRVALVGKPNVGKSSLLNKLAGAERSVVDNVAGTTVDPVDELIEL 259

Query: 265 EGYLVKISDTAGIRE 279
           +G   +  DTAG+R 
Sbjct: 260 DGKTWQFVDTAGLRR 274


>gi|168183662|ref|ZP_02618326.1| GTP-binding protein [Clostridium botulinum Bf]
 gi|237797042|ref|YP_002864594.1| GTP-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|182673255|gb|EDT85216.1| GTP-binding protein [Clostridium botulinum Bf]
 gi|229263544|gb|ACQ54577.1| GTP-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 399

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 8/121 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I  +G +N+GKSSL NA+  +D++IV+ I GTT D ++  ++L     V  +DTAG
Sbjct: 8   NRIHITFIGKTNSGKSSLMNAIIGQDISIVSPIEGTTTDPVSKSMELIPLGPVLFTDTAG 67

Query: 277 IRETDDI--VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK--NIDFIFIGTKS 329
           + +  ++  V  E    T L+ + A  ++  K+I+    KK I+  K  NI +I +  K 
Sbjct: 68  LEDNTELGKVRIEKTLNTLLKTDFAIYVMSAKDIDINLYKKTINKFKQQNISYITVINKI 127

Query: 330 D 330
           D
Sbjct: 128 D 128


>gi|164686728|ref|ZP_02210756.1| hypothetical protein CLOBAR_00323 [Clostridium bartlettii DSM
           16795]
 gi|164604118|gb|EDQ97583.1| hypothetical protein CLOBAR_00323 [Clostridium bartlettii DSM
           16795]
          Length = 637

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIR 278
           I + G+ N GK+++FN L   +   V + PG T +        EGYL   +KI D  GI 
Sbjct: 4   IALFGNPNVGKTTVFNLLTGSN-QYVGNWPGVTIE------KKEGYLNEDIKIVDLPGIY 56

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
             D    +E + ++FLE E+ D+IL
Sbjct: 57  AMDTFSNEEKVSKSFLENEDVDVIL 81


>gi|115524769|ref|YP_781680.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris
           BisA53]
 gi|115518716|gb|ABJ06700.1| GTP-binding protein, HSR1-related protein [Rhodopseudomonas
           palustris BisA53]
          Length = 455

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 29/186 (15%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           R  Y++V L G++NAGKS+LFN L + +V     +  T    L   +   G    +SDT 
Sbjct: 218 RVPYRVVALVGYTNAGKSTLFNRLTRAEVQAADMLFATLDPTLRALVLPHGGKAMLSDTV 277

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------------ISFPKNI 320
           G             + T  EV  ADLIL +++I+ +                 I+     
Sbjct: 278 GFISNLPTQLVAAFRATLEEVLEADLILHVRDISHEDADAQQDDVDAVLRQLGIAPGTGS 337

Query: 321 DFIFIGTKSDLYSTYTEE--------YD-----HLISSFTGEGLEELINKIKSILSNKFK 367
             I +  K D +S   +E         D     HL+S+ TG+GL+ L+  I+  L+    
Sbjct: 338 PIIEVWNKIDRFSPEQQEELQNIAARRDSEHPCHLVSAVTGQGLDALLQAIEDRLAETRT 397

Query: 368 KLPFSI 373
            L  ++
Sbjct: 398 TLDLTV 403


>gi|212709954|ref|ZP_03318082.1| hypothetical protein PROVALCAL_01005 [Providencia alcalifaciens DSM
           30120]
 gi|212687363|gb|EEB46891.1| hypothetical protein PROVALCAL_01005 [Providencia alcalifaciens DSM
           30120]
          Length = 426

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 27/183 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           + ++G++NAGKSSLFN +   DV     +  T    L  ID+D  G +V ++DT G IR 
Sbjct: 200 VSLVGYTNAGKSSLFNRMTSADVYAADQLFATLDPTLRRIDVDDVGTVV-LADTVGFIRH 258

Query: 280 -TDDIVEKEGIKRTFLEVENADLILL------------LKEINSKKEISFPKNIDFIFIG 326
              D+V     K T  E   A+L+L             ++ +NS  E      I  + + 
Sbjct: 259 LPHDLV--AAFKATLQETREANLLLHVIDAVDVRLDENIQAVNSVLEEIDANEIPTLLVM 316

Query: 327 TKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            K D+   +    D           +S+ TGEG+  L+  +   LS +   +   +P ++
Sbjct: 317 NKVDMLDDFVPRIDRDEDNKPVRVWVSAQTGEGIPLLLQALTERLSGEIAHVELRLPPNE 376

Query: 378 RHL 380
             L
Sbjct: 377 GRL 379


>gi|331002901|ref|ZP_08326414.1| GTP-binding protein Era [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330413194|gb|EGG92568.1| GTP-binding protein Era [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 298

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 57/96 (59%), Gaps = 3/96 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDT 274
           +++G+ + ++G  N GKS+L N L  + +AI ++ P TTR+ + T+  D  G +V + DT
Sbjct: 1   MKSGF-VALIGRPNVGKSTLMNTLIGQKIAITSNKPQTTRNRIQTVFTDERGQIVFL-DT 58

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            GI +  + + +  +K +   + + D++L L E N+
Sbjct: 59  PGIHKAKNKLGEYMVKVSTRTLRDVDMVLWLIEPNT 94


>gi|218132942|ref|ZP_03461746.1| hypothetical protein BACPEC_00803 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991815|gb|EEC57819.1| hypothetical protein BACPEC_00803 [Bacteroides pectinophilus ATCC
           43243]
          Length = 322

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 4/108 (3%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDL 262
            S IS G+ G+I ++G+   I+G  N GKS+L N +  + +AI ++ P TTR+ + T+  
Sbjct: 13  QSGISDGRSGDI-KSGFA-AIIGRPNVGKSTLMNRIIGQKIAITSNKPQTTRNRIQTVYT 70

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           D  G +V + DT GI +  + + +  +      ++  DL+L L E +S
Sbjct: 71  DDRGQIVFL-DTPGIHKAKNKLGEYMVGAAEKTIDEVDLVLWLVEPSS 117


>gi|220912306|ref|YP_002487615.1| GTP-binding protein EngA [Arthrobacter chlorophenolicus A6]
 gi|219859184|gb|ACL39526.1| small GTP-binding protein [Arthrobacter chlorophenolicus A6]
          Length = 516

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N LA  +  +V +  GTTRD +   ++L     +  DTAGIR  
Sbjct: 255 RIALIGRPNVGKSSLLNKLAGTERVVVDNTAGTTRDPVDEFIELGDRTWRFVDTAGIRRR 314

Query: 281 DDIVEKEGIK---RTFLEVENADLILLLKEIN 309
             + +        RT   +E A++ ++L  ++
Sbjct: 315 QHMAQGADYYASLRTQAALEKAEVAVVLLAVD 346



 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 21/160 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD +       G    + DT G     
Sbjct: 81  LAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSASWNGRNFTLVDTGGWEHDA 140

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKNI--DFI 323
             +     ++  + VE AD +L + +                  SKK +    N   DF 
Sbjct: 141 RGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEGVMKMLRRSKKPVIMVANKVDDFA 200

Query: 324 FIGTKSDLYS-TYTEEYDHLISSFTGEGLEELINKIKSIL 362
                + L+   + E Y   +S+  G G+ +L++ +  +L
Sbjct: 201 QEADSAALWGLGFGEPYP--VSALHGRGVADLLDHVMDVL 238


>gi|172037536|ref|YP_001804037.1| GTP-binding protein Era [Cyanothece sp. ATCC 51142]
 gi|254783295|sp|B1WT49|ERA_CYAA5 RecName: Full=GTPase Era
 gi|171698990|gb|ACB51971.1| GTP-binding protein [Cyanothece sp. ATCC 51142]
          Length = 314

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 22/157 (14%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKS+L N L  + +AI + +  TTR+ L   L  +   +   DT GI +    
Sbjct: 27  IIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLQGILTTDKAQIIFVDTPGIHKPHHT 86

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTKSDL 331
           + K  +K     + + D+ILL+ + + K            K ++ P  +       +++ 
Sbjct: 87  LGKIIVKNAKTAINSVDIILLVVDSSVKSGGGDRYIIDLLKTVNQPVILGLNKSDQQTEK 146

Query: 332 YSTYTEEYDHLI----------SSFTGEGLEELINKI 358
           Y    E Y +LI          S+ TG+G+E L N +
Sbjct: 147 YQEIDESYANLIQDHNWPMIKFSALTGDGVETLQNTL 183


>gi|153005111|ref|YP_001379436.1| small GTP-binding protein [Anaeromyxobacter sp. Fw109-5]
 gi|152028684|gb|ABS26452.1| small GTP-binding protein [Anaeromyxobacter sp. Fw109-5]
          Length = 689

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +++     I+++G+ N GKS+LF AL  K V  V++ PGTT +V      +EG    + D
Sbjct: 20  QVVAASRAIILVGNPNVGKSALFGALTGKYVT-VSNYPGTTVEVTRGSATIEGRPWHVMD 78

Query: 274 TAGIRETDDIVEKEGIKRTFLEVEN 298
           T G      + E E + R  L  E 
Sbjct: 79  TPGTNNLIPMSEDEQVTRDILLTER 103


>gi|77919007|ref|YP_356822.1| GTP-binding protein EngA [Pelobacter carbinolicus DSM 2380]
 gi|123574290|sp|Q3A4Q5|DER_PELCD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|77545090|gb|ABA88652.1| putative Era-like GTP-binding protein [Pelobacter carbinolicus DSM
           2380]
          Length = 439

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN +     AIV D PG TRD     +   G    + DT G    +
Sbjct: 4   VAIVGRPNVGKSTLFNRILGTRRAIVEDYPGVTRDRNYAQVTRYGTPFVLIDTGGFEPAS 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            + + K+  +++ L VE AD+IL +
Sbjct: 64  QNRLLKQMREQSELAVEEADVILFV 88



 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N +   +  +     GTTRD +            + DTAGIR  
Sbjct: 177 RLAVIGRPNVGKSSLINRMIGVERLVANPTAGTTRDSIDTPFVYNKKSYVLIDTAGIRRK 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +   +EK  + ++   +E A ++L++
Sbjct: 237 GRVQQKLEKYSVIQSLKAMERAHVVLVV 264


>gi|269795286|ref|YP_003314741.1| hypothetical protein Sked_19830 [Sanguibacter keddieii DSM 10542]
 gi|269097471|gb|ACZ21907.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Sanguibacter keddieii DSM 10542]
          Length = 531

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 8/105 (7%)

Query: 213 GEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           G  + NG  ++ ++G  N GKSSL N +A  +  +V    GTTRD +   + L+G     
Sbjct: 263 GVAVPNGPRRVALVGRPNVGKSSLLNKVAGSNRVVVDPTAGTTRDPVDELIQLKGKDWVF 322

Query: 272 SDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLLKEINSK 311
            DTAGIR    + + +G       RT   +E A++ ++L + + K
Sbjct: 323 VDTAGIRRR--VHQTQGADFYASLRTQAAIEKAEVAVVLLDASEK 365



 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G
Sbjct: 99  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVSYPAEWGGRRFMLVDTGG 153


>gi|168187418|ref|ZP_02622053.1| GTP-binding protein [Clostridium botulinum C str. Eklund]
 gi|169294718|gb|EDS76851.1| GTP-binding protein [Clostridium botulinum C str. Eklund]
          Length = 598

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 106/226 (46%), Gaps = 45/226 (19%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA---------KKDVAIVTDIPGTTRDVLTIDLDL-EGY 267
           N  KI ++G++NAGKS+L N L           K+     D+   T DV T  L L +  
Sbjct: 362 NVPKISLVGYTNAGKSTLRNKLCDIASPRDVVDKETVFEADMLFATLDVTTRALVLPDNR 421

Query: 268 LVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFP----- 317
           LV ++DT G IR+   D+V  E  K T  EV N+DL+L + + +SK   K+I        
Sbjct: 422 LVTLTDTVGFIRKLPHDLV--EAFKSTLEEVVNSDLLLHVVDSSSKDAYKQIEAVNLVLE 479

Query: 318 --KNID--FIFIGTKSDLYST-----YTEEYDHL----ISSFTGEGLEELINKIKSILSN 364
             ++ID   I I  K D           E++++L    IS+     L+ L+N++   L N
Sbjct: 480 ELESIDKPMILILNKIDKADKEQLEGLEEKFNNLKVLEISARDNLNLDTLLNEVCRALPN 539

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNE--KDCGLDIIA 406
             KK+ F IP      Y  S TV  L  +   L E  KD G  I+A
Sbjct: 540 PLKKVEFLIP------YSDSATVAMLHRSGKVLEEEYKDNGTRIVA 579


>gi|222632589|gb|EEE64721.1| hypothetical protein OsJ_19577 [Oryza sativa Japonica Group]
          Length = 423

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 40/252 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R+GY + +LG  N GKS+L N +  + ++IVTD P TTR  +L I  + E Y + + DT 
Sbjct: 124 RSGY-VAVLGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPE-YQIILYDTP 181

Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---------- 324
           G I++    ++   +K     V +AD +L++  +++ K    P+ ID I           
Sbjct: 182 GVIKKEMHKLDTMMMKNVRSAVGSADCVLVV--VDACK---MPEKIDEILEEGVGNKDTE 236

Query: 325 -----------------IGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKF 366
                            I  K + Y  +T   D + IS+  G G++++   I S L    
Sbjct: 237 LPVLLVLNKKDLIKPGEIAKKLEWYQKFTNADDVIPISAKFGHGVDDIKEWILSKLPLGP 296

Query: 367 KKLPFSIPSHKRHLYHLSQTVR---YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
              P  I S     + + + VR   +L+        C +++I+   R  +    ++   V
Sbjct: 297 AYYPKDIASEHPERFFVGEIVREKIFLQYRQEIPYACQVNVISYKSRPTAKDFIQVEILV 356

Query: 424 DVEQLLDIIFSK 435
           + E    II  K
Sbjct: 357 EKESQRSIILGK 368


>gi|125553352|gb|EAY99061.1| hypothetical protein OsI_21018 [Oryza sativa Indica Group]
          Length = 423

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 40/252 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R+GY + +LG  N GKS+L N +  + ++IVTD P TTR  +L I  + E Y + + DT 
Sbjct: 124 RSGY-VAVLGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPE-YQIILYDTP 181

Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---------- 324
           G I++    ++   +K     V +AD +L++  +++ K    P+ ID I           
Sbjct: 182 GVIKKEMHKLDTMMMKNVRSAVGSADCVLVV--VDACK---MPEKIDEILEEGVGNKDTE 236

Query: 325 -----------------IGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKF 366
                            I  K + Y  +T   D + IS+  G G++++   I S L    
Sbjct: 237 LPVLLVLNKKDLIKPGEIAKKLEWYQKFTNADDVIPISAKFGHGVDDIKEWILSKLPLGP 296

Query: 367 KKLPFSIPSHKRHLYHLSQTVR---YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
              P  I S     + + + VR   +L+        C +++I+   R  +    ++   V
Sbjct: 297 AYYPKDIASEHPERFFVGEIVREKIFLQYRQEIPYACQVNVISYKSRPTAKDFIQVEILV 356

Query: 424 DVEQLLDIIFSK 435
           + E    II  K
Sbjct: 357 EKESQRSIILGK 368


>gi|331222340|ref|XP_003323844.1| hypothetical protein PGTG_05746 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309302834|gb|EFP79425.1| hypothetical protein PGTG_05746 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 152

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           +G  D+ +   L  LI +E E QR  ++   + +    Y Q   KL    +  EA +DFS
Sbjct: 25  HGSTDINKILGLKHLIKAEAEEQRSWAVSEFNSKFDHTYQQMQKKLKQSIALCEAIIDFS 84

Query: 180 EEEDVQNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           E+  + +    K+V++ +L L+  I++ +SQ K  + I  G K+ + G  N 
Sbjct: 85  EDGSMDDLEIWKQVIDHLLDLQTAINTQLSQSKQRKKISMGIKVSLYGSPNC 136


>gi|315604206|ref|ZP_07879272.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313912|gb|EFU61963.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 512

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL NALA     +V ++ GTTRD +   ++L+       DTAGIR
Sbjct: 253 RVALVGRPNVGKSSLLNALAGGHRVVVNELAGTTRDPVDELVELDSRQWWFVDTAGIR 310



 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 79  LAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYPAEWAGRNFTLVDTGGWE--- 135

Query: 282 DIVEKEGIKRTFLE-----VENADLILLL 305
             ++ +G+ R+  E     V+ AD ++L+
Sbjct: 136 --IDVKGLDRSVAEQAEIAVDLADAVVLV 162


>gi|294463173|gb|ADE77123.1| unknown [Picea sitchensis]
          Length = 433

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 32/184 (17%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +G   R+GY + ++G  N GKS+L N +  + ++IVTD P TTR  +        Y + +
Sbjct: 129 VGPDHRSGY-VAVVGKPNVGKSTLLNQMIGQKLSIVTDKPQTTRHRILGLCSAPDYQMVL 187

Query: 272 SDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNI 320
            DT G+ + +   ++   +K       NAD +L + ++    E          +   K  
Sbjct: 188 YDTPGVIQKEMHKLDAMMMKNVHSATGNADCVLTVVDVCKVPEKVNDLFEEDGVDLKKKP 247

Query: 321 DFIFIGTKSDLYST--------YTEEY---DHL--ISSFTGEGLEELINKIKSILSNKFK 367
             + +  K DL           + E++   DH+  IS+  G G+E++ N I S       
Sbjct: 248 PTLLVLNKKDLMKPGEIAKRMEWYEKFGGADHILSISAKYGHGVEDVKNWIVS------- 300

Query: 368 KLPF 371
           KLP+
Sbjct: 301 KLPY 304


>gi|256375751|ref|YP_003099411.1| GTP-binding protein EngA [Actinosynnema mirum DSM 43827]
 gi|255920054|gb|ACU35565.1| small GTP-binding protein [Actinosynnema mirum DSM 43827]
          Length = 471

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D+PG TRD +  D    G    + DT G     
Sbjct: 34  LAIVGRPNVGKSTLVNRIIGRREAVVQDVPGVTRDRVAYDALWNGRKFTVVDTGGWEPDA 93

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +      +  L ++ AD +LL+
Sbjct: 94  TGMMASVAAQAELAMQTADAVLLV 117



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 7/120 (5%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +VL+ IL    ++     +   G       ++ ++G  N GKSSL N L  ++ ++V 
Sbjct: 180 SGDVLDKIL----EVLPETPRDTFGANTGGPRRVALVGRPNVGKSSLLNRLTGENRSVVD 235

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
            + GTT D +   ++L+  + +  DTAG+R+  +     E     RT   +E+A++ ++L
Sbjct: 236 SVAGTTVDPVDSLVELDDEVWRFVDTAGLRKRVNFASGAEYYASLRTKAAIESAEVAVVL 295


>gi|257468039|ref|ZP_05632135.1| ferrous iron transport protein B [Fusobacterium ulcerans ATCC
           49185]
 gi|317062325|ref|ZP_07926810.1| ferrous iron transporter B [Fusobacterium ulcerans ATCC 49185]
 gi|313688001|gb|EFS24836.1| ferrous iron transporter B [Fusobacterium ulcerans ATCC 49185]
          Length = 731

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 19/172 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+   G+ N GKS+L NA+A   +  V + PG T +      + +G  +K+ D  G+   
Sbjct: 3   KLAFTGNPNVGKSALINAIAGSKLK-VGNWPGVTVEKKEAIFNYKGEEIKLVDLPGVYSL 61

Query: 281 DDIVEKEGIKRTFLEVENADLIL-LLKEINSK---------KEISFPKNIDFIFIGTKSD 330
                +E I R F+  E+ D+++ ++   N +         KE+  P  +   F    + 
Sbjct: 62  SPYTLEEKITRDFILDEDPDVVINVIDSTNLERNLYLTYLLKELEKPTIMALNFYDEFTK 121

Query: 331 L-YSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           L Y    EE+  LI       S+  G G+EEL++ I  + + K K   +S+P
Sbjct: 122 LNYKLNMEEFQQLIELKAISVSALKGTGIEELLDSIIELAAKKEKIKKYSLP 173


>gi|311742420|ref|ZP_07716229.1| ribosome-associated GTPase EngA [Aeromicrobium marinum DSM 15272]
 gi|311314048|gb|EFQ83956.1| ribosome-associated GTPase EngA [Aeromicrobium marinum DSM 15272]
          Length = 450

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ I+G  N GKSSL N LA ++  +V D  GTT D +   ++L G L    DTAGIR
Sbjct: 190 RVAIVGKPNVGKSSLLNRLAGEERVVVDDASGTTVDPVDELVELGGGLWTFIDTAGIR 247



 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  +    G    + DT G
Sbjct: 17  LAVIGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVAYEATWNGRTFTVVDTGG 71


>gi|291523016|emb|CBK81309.1| iron-only hydrogenase maturation protein HydF [Coprococcus catus
           GD/7]
          Length = 401

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 24/172 (13%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKI 271
           GE +  G+     G  NAGKSSL NA+  +++A+V+D  GTT D ++  ++L     V I
Sbjct: 9   GERVHIGF----FGRRNAGKSSLVNAVTGQELAVVSDTRGTTTDPVSKAMELLPIGPVVI 64

Query: 272 SDTAG-----------IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-EISFPKN 319
            DT G           +R+T  I+ K  +      V  AD    LK+ + +  EI   K 
Sbjct: 65  IDTPGFDDEGALGELRVRKTRQILNKSDVA-----VLVADCTEGLKDCDRELIEIFRQKE 119

Query: 320 IDFIFIGTKSDLYSTYTE--EYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           I ++ +  K DL   + E  E +  +S+     +E L  KI +I   +  KL
Sbjct: 120 IPWLLVWNKCDLKPEHPEAKENEIYVSATEKIEIEALKEKIAAIGKTEENKL 171


>gi|219109543|ref|XP_002176526.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411061|gb|EEC50989.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 551

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 15/102 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE----------GYLVKI 271
           I I+G  N GKSSL N++     AIV+++ GTTRD  +ID  +E            + + 
Sbjct: 253 IAIIGRPNVGKSSLLNSIFGDTRAIVSEMAGTTRD--SIDAVMERPPPPGSDDLSTIYRF 310

Query: 272 SDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINS 310
            DTAGIR    +    E   + R    +  AD++LL+ +  S
Sbjct: 311 VDTAGIRRKGKVDFGPEFFMVNRALRAIRRADVVLLILDATS 352



 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 222 IVILGHSNAGKSSLFNALA--KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           I I+G  N GKS+L N +A  +   AIV D  G TRD      +  G    I DT G+  
Sbjct: 72  IAIVGRPNVGKSALVNRIAGSQSGGAIVADESGITRDRTYRPAEFLGERFMIVDTGGLVF 131

Query: 280 TDD---IVEKEGIKRTFLEVENADLILLL 305
            DD   +  KE  ++  + +E +  ++++
Sbjct: 132 DDDESTLFAKEIREQAMVAIEESAAVIMV 160


>gi|28211008|ref|NP_781952.1| GTP-binding protein [Clostridium tetani E88]
 gi|28203447|gb|AAO35889.1| GTP-binding protein [Clostridium tetani E88]
          Length = 396

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 29/164 (17%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-------------VLTID--- 261
           N   I  LG  NAGKSS+ NA++ + V+IV+++ GTT D             ++ ID   
Sbjct: 8   NRIHIAFLGRRNAGKSSIINAISNQQVSIVSNVAGTTTDPVYKAMELFPIGPIMLIDTAG 67

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV--ENADLILLLKEINSKKEISFPKN 319
           LD EGY+  +     I +T +I+ K  I    ++   EN +  + LKE  SK++I  P  
Sbjct: 68  LDDEGYIGNLR----IEKTKEIMNKTDIAVIAIDCKNENFEYEMYLKEKLSKRKI--PTI 121

Query: 320 IDFIFIGTKSDLYSTYT---EEYDHL--ISSFTGEGLEELINKI 358
           I    I   ++L        +++D++  IS+   E +++L  KI
Sbjct: 122 IALNKIDKVANLDEAIVRARKQFDNIVSISALRRENIDKLKEKI 165


>gi|294495130|ref|YP_003541623.1| ferrous iron transporter B [Methanohalophilus mahii DSM 5219]
 gi|292666129|gb|ADE35978.1| ferrous iron transport protein B [Methanohalophilus mahii DSM 5219]
          Length = 677

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           ++ E   NG  KIV++G+ N GKS LFN  +     IV++ PGTT ++   D  + G   
Sbjct: 14  QISETPSNGLEKIVLVGNPNVGKSVLFNHFSN-SYTIVSNYPGTTVEISKGDGTIAGKEY 72

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +I DT G+     I E+E + + ++  E+A + L
Sbjct: 73  EIIDTPGMYSMLPITEEERVAQKYVLDEDAHVYL 106


>gi|257452216|ref|ZP_05617515.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
 gi|317058759|ref|ZP_07923244.1| small GTP-binding protein [Fusobacterium sp. 3_1_5R]
 gi|313684435|gb|EFS21270.1| small GTP-binding protein [Fusobacterium sp. 3_1_5R]
          Length = 400

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 9/123 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   +   G  NAGKSSLFN L  +D ++V+   GTT D +   ++L GY  +++ DTAG
Sbjct: 9   NRKHVAFFGKRNAGKSSLFNLLLGEDYSLVSSHLGTTTDPVYKAMELVGYGPIRLIDTAG 68

Query: 277 IRETDDIVE------KEGIKR--TFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK 328
           + +  ++ E      KE +++    + V +A   + ++E    K++    +I ++F+  K
Sbjct: 69  LDDIGELGELRVKKSKEVLRKIDMAIYVLDASQEITVEEREEAKKLFQRFHIPYVFVWNK 128

Query: 329 SDL 331
            D+
Sbjct: 129 RDM 131


>gi|284991408|ref|YP_003409962.1| ribosome-associated GTPase EngA [Geodermatophilus obscurus DSM
           43160]
 gi|284064653|gb|ADB75591.1| ribosome-associated GTPase EngA [Geodermatophilus obscurus DSM
           43160]
          Length = 447

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 37/184 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           ++ ++G  N GKSSL N LAK + ++V  + GTT D +   + L G   +  DTAG+R  
Sbjct: 183 RVALVGRPNVGKSSLLNRLAKDERSVVDSVAGTTVDPVDSIVTLGGEEWRFVDTAGLRRK 242

Query: 280 --TDDIVEKEGIKRTFLEVENADLILLL---KEINSKKE-------ISFPKNIDFIFIGT 327
             T   +E     RT   ++ A++ ++L    E+ S+++       I   + +   F   
Sbjct: 243 VNTASGMEYYASLRTEAAIQAAEVAVVLLAADEVVSEQDQRVITQVIEAGRALVIAF--- 299

Query: 328 KSDLYSTYTEEYDHL-------------------ISSFTGEGLEELINKIKSILSNKFKK 368
             + + T  E+  H                    IS+ TG G+++L   ++  L++   +
Sbjct: 300 --NKWDTLDEDRRHQLEREIERDLARVKWASRVNISALTGRGVDKLAQHLREALASWETR 357

Query: 369 LPFS 372
           +P +
Sbjct: 358 VPTA 361



 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKS+L N    +  A+V D PG TRD +  +    G    + DT G
Sbjct: 11  VAIVGRPNVGKSTLVNRFLGRRAAVVQDTPGVTRDRIAYEALWNGKRFTVVDTGG 65


>gi|171184518|ref|YP_001793437.1| GTP-binding proten HflX [Thermoproteus neutrophilus V24Sta]
 gi|170933730|gb|ACB38991.1| GTP-binding proten HflX [Thermoproteus neutrophilus V24Sta]
          Length = 403

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++VI G+++AGK++LFN L  +D  +V   P  T +  +  LDL G  V ++DT G  + 
Sbjct: 187 EVVITGYTSAGKTTLFNRLVGED-KLVDGKPFATLETYSRSLDLWGKRVVVTDTIGFIDD 245

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
              +  E    T  E+ +AD+ILL+ + +  +E
Sbjct: 246 LPPLLVESFHSTLQEIIDADVILLVVDGSEPRE 278


>gi|163841322|ref|YP_001625727.1| GTP-binding protein EngA [Renibacterium salmoninarum ATCC 33209]
 gi|162954798|gb|ABY24313.1| GTP-binding protein [Renibacterium salmoninarum ATCC 33209]
          Length = 504

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 21/160 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD +  + +  G    + DT G     
Sbjct: 69  LAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYNAEWNGREFTVVDTGGWEFDA 128

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKSDLYS 333
             + +   ++  + +E AD +L + +     +  + S  K +       I +G K+D   
Sbjct: 129 KGIHQRVAEQAEMAIELADAVLFVVDATVGATAMDESMMKMLRRSKKPIILVGNKADDPR 188

Query: 334 TYT-----------EEYDHLISSFTGEGLEELINKIKSIL 362
           T +           E +   +S+  G G+ +L++KI  IL
Sbjct: 189 TDSDVAALWGLGLGEPWS--VSAQHGRGVADLLDKIMEIL 226



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           +I ++G  N GKSSL N LA  +  +V  + GTTRD +   ++L     +  DTAGIR
Sbjct: 243 RIALIGRPNVGKSSLLNKLAGSERVVVDPMAGTTRDPVDEFIELGDRTWRFVDTAGIR 300


>gi|319793097|ref|YP_004154737.1| GTP-binding protein hsr1-related protein [Variovorax paradoxus EPS]
 gi|315595560|gb|ADU36626.1| GTP-binding protein HSR1-related protein [Variovorax paradoxus EPS]
          Length = 469

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEG-YLVKIS 272
           + +   +I ++GH+NAGK+SL   L ++     V+  PGTTR V + DL++ G   V+  
Sbjct: 1   MTQEAIRIAVVGHTNAGKTSLLRTLTRRVSFGEVSQRPGTTRHVESADLEVNGEAAVRFF 60

Query: 273 DTAGI 277
           DT G+
Sbjct: 61  DTPGL 65


>gi|153005017|ref|YP_001379342.1| GTP-binding protein Era [Anaeromyxobacter sp. Fw109-5]
 gi|152028590|gb|ABS26358.1| GTP-binding protein Era [Anaeromyxobacter sp. Fw109-5]
          Length = 310

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  N GKS+L N +  + VAIVT  P TTR  +    + +G  +   DT G
Sbjct: 10  RAGF-VAIVGRPNVGKSTLLNRVLGEHVAIVTPRPQTTRTRILGIWNGKGAQIAFFDTPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           +      + +  ++     ++  D +L+L E  +  E
Sbjct: 69  LHRAKGPLNRRMVEVALTTLDEVDAVLMLVEAGTGPE 105


>gi|332799884|ref|YP_004461383.1| GTP-binding proten HflX [Tepidanaerobacter sp. Re1]
 gi|332697619|gb|AEE92076.1| GTP-binding proten HflX [Tepidanaerobacter sp. Re1]
          Length = 413

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 29/177 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVA----IVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           I ++G++NAGKS+L NAL   DV     +   +  TTR+++  D    G  V +SDT G 
Sbjct: 196 ISLVGYTNAGKSTLMNALTDADVKTGDRLFETLDTTTRNLVLPD----GRKVLLSDTVGF 251

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFP 317
           IR+    +  E  + T  EV+ ADL++                   +LKE+ +++     
Sbjct: 252 IRKLPHHL-VEAFRATLEEVKEADLLIHVADGSSPTIDEDIFVVNSVLKELGAEQTPIII 310

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                   G  S     Y ++    IS+ TG+ L++L+  I  IL +  +K    IP
Sbjct: 311 AINKIDISGDASVFIEGYNKDNTIGISALTGKNLDKLLEAICRILPSNRRKAELFIP 367


>gi|330813897|ref|YP_004358136.1| GTP-binding protein EngA [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486992|gb|AEA81397.1| GTP-binding protein EngA [Candidatus Pelagibacter sp. IMCC9063]
          Length = 267

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           I I+G  N GKS+ FN +  K+++ V D PGTT+DV++         +   DT G++   
Sbjct: 5   ISIVGKPNVGKSTFFNKIFSKNISKVADEPGTTKDVISESFLFGNEELVFHDTGGLKKKA 64

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           ++ D  +    K     + N+ +++ + + N K
Sbjct: 65  KSKDENQSYITKECLTAINNSSIVIFMMDANDK 97


>gi|260200776|ref|ZP_05768267.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46]
 gi|289443171|ref|ZP_06432915.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46]
 gi|289416090|gb|EFD13330.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46]
          Length = 285

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 214 EIIRNGYK--IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           EI  +G    + ++G  N GKS+L N +  +  A+V DIPG TRD +  D    G    +
Sbjct: 19  EIAESGAAPVVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVV 78

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            DT G       +++   ++  + +  AD ++L+
Sbjct: 79  QDTGGWEPNAKGLQRLVAEQASVAMRTADAVILV 112



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA    ++V +  GTT D +   ++L G + +  DTAG+R
Sbjct: 201 RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLR 258


>gi|257465989|ref|ZP_05630300.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917145|ref|ZP_07913385.1| small GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691020|gb|EFS27855.1| small GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 400

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 9/123 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   +   G  NAGKSSLFN L  +D ++V+   GTT D +   ++L GY  +++ DTAG
Sbjct: 9   NRKHVAFFGKRNAGKSSLFNLLLGEDYSLVSSHLGTTTDPVYKAMELVGYGPIRLIDTAG 68

Query: 277 IRETDDIVE------KEGIKR--TFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK 328
           + +  ++ E      KE +++    + V +A   + ++E    K++    +I ++F+  K
Sbjct: 69  LDDIGELGELRVKKSKEVLRKIDMAIYVLDASQEITVEEREEAKKLFQRFHIPYVFVWNK 128

Query: 329 SDL 331
            D+
Sbjct: 129 RDM 131


>gi|170756488|ref|YP_001783220.1| GTP-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169121700|gb|ACA45536.1| GTP-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 399

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 16/125 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I  +G +N+GKSSL NA+  +D++IV+ I GTT D ++  ++L     V  +DTAG
Sbjct: 8   NRIHITFIGKTNSGKSSLMNAIIGQDISIVSSIEGTTTDPVSKAMELIPLGPVLFTDTAG 67

Query: 277 IRETDDI--VEKEGIKRTFLEVENA---------DLILLLKEINSKKEISFPKNIDFIFI 325
           + +  ++  V  E    T L+   A         D+ L  K IN  KE    +NI +I +
Sbjct: 68  LEDNTELGKVRIEKTLNTLLKTNFAIYVMSAKDIDISLYEKTINKFKE----QNISYITV 123

Query: 326 GTKSD 330
             K D
Sbjct: 124 VNKID 128


>gi|326504644|dbj|BAK06613.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 303

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 27/197 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R+GY + +LG  N GKS+L N +  + ++IVTD P TTR  +L I  + E Y + + DT 
Sbjct: 101 RSGY-VAVLGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPE-YQIILYDTP 158

Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLIL--------------LLKEINSKKEISFP--- 317
           G I++    ++   +K     + NAD ++              +L+E    KE   P   
Sbjct: 159 GVIKKEMHKLDSMMMKNVQSAIGNADCVIVVADASKVPEKIDDMLEEGVGNKETKVPVVL 218

Query: 318 --KNIDFIF---IGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                D I    I  K + Y  +T+  D + IS+  G G++++   I S L       P 
Sbjct: 219 VLNKKDMIKPGEIAKKLEWYQKFTDVDDVIPISAKFGHGVDDIKEWILSKLPLGPAYYPK 278

Query: 372 SIPSHKRHLYHLSQTVR 388
            I S     + + + VR
Sbjct: 279 DIASEHPERFFVGEIVR 295


>gi|302206113|gb|ADL10455.1| GTP-binding protein EngA [Corynebacterium pseudotuberculosis C231]
          Length = 540

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N    +  A+V D PG TRD ++   D  G    + DT G     
Sbjct: 108 VAIVGRPNVGKSSLVNRFLGRREAVVEDFPGVTRDRVSYLADWGGQRFWVQDTGGWDPNV 167

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++  + +  AD+I+++
Sbjct: 168 KGIHGAIARQAEVAMATADVIIMV 191



 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 46/81 (56%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L+  +++   + +   I+    ++ ++G  N GKSSL N ++ +D ++V +  GTT D +
Sbjct: 258 LEQVLAAFPEEPRSASIVEGPRRVALVGKPNVGKSSLLNKISGEDRSVVDNASGTTVDPV 317

Query: 259 TIDLDLEGYLVKISDTAGIRE 279
              + L+  L K  DTAG+R+
Sbjct: 318 DSLVQLDQKLWKFIDTAGLRK 338


>gi|300858400|ref|YP_003783383.1| hypothetical protein cpfrc_00982 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685854|gb|ADK28776.1| hypothetical protein cpfrc_00982 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330667|gb|ADL20861.1| GTP-binding protein EngA [Corynebacterium pseudotuberculosis 1002]
 gi|308276351|gb|ADO26250.1| GTP-binding protein EngA [Corynebacterium pseudotuberculosis I19]
          Length = 540

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N    +  A+V D PG TRD ++   D  G    + DT G     
Sbjct: 108 VAIVGRPNVGKSSLVNRFLGRREAVVEDFPGVTRDRVSYLADWGGQRFWVQDTGGWDPNV 167

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +     ++  + +  AD+I+++
Sbjct: 168 KGIHGAIARQAEVAMATADVIIMV 191



 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 46/81 (56%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L+  +++   + +   I+    ++ ++G  N GKSSL N ++ +D ++V +  GTT D +
Sbjct: 258 LEQVLAAFPEEPRSASIVEGPRRVALVGKPNVGKSSLLNKISGEDRSVVDNASGTTVDPV 317

Query: 259 TIDLDLEGYLVKISDTAGIRE 279
              + L+  L K  DTAG+R+
Sbjct: 318 DSLVQLDQKLWKFIDTAGLRK 338


>gi|125623108|ref|YP_001031591.1| GTP-binding protein YqeH [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124491916|emb|CAL96837.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 381

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 15/103 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ K     +DV   +  PGTT D + I LD +  L
Sbjct: 175 EHYRRGRDVYVVGVTNVGKSTLINAIIKSASGSEDVITTSRFPGTTLDKIEIPLDEDSAL 234

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           +   DT GI     +         +LE E+   +   KEIN K
Sbjct: 235 I---DTPGIIHRGQMAH-------YLEPEDLKYVSPRKEINPK 267


>gi|7208811|emb|CAB76934.1| putative GTP-binding protein [Clostridium thermocellum]
          Length = 400

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 12/155 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKSS+ NA+  +++AIV+D+ GTT + +   ++L     V I DT G
Sbjct: 10  NRLHIGFFGKRNAGKSSVVNAVTGQNLAIVSDVKGTTTNPVYKAMELLPLGPVVIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
           I +   + E   +KR+   +   D+ +L+ +    K        E+   K+I ++ +  K
Sbjct: 70  IDDKGTLGEMR-VKRSRQVLNKTDIAVLVIDATCGKSEDDEKLIELFEKKDIKYVVVYNK 128

Query: 329 SDL--YSTYTEEYDHLISSFTGEGLEELINKIKSI 361
           +DL  +     + +  +S+ TG  + +L  KI S+
Sbjct: 129 ADLEGHEETVGDNEIYVSAKTGYNINKLKEKIASL 163


>gi|78045135|ref|YP_359291.1| GTP-binding protein Era [Carboxydothermus hydrogenoformans Z-2901]
 gi|123576937|sp|Q3AEZ3|ERA_CARHZ RecName: Full=GTPase Era
 gi|77997250|gb|ABB16149.1| GTP-binding protein Era [Carboxydothermus hydrogenoformans Z-2901]
          Length = 298

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +    +AI++D P TTR+ +   L  E   +   DT G+++  
Sbjct: 8   VSIVGRPNVGKSTLLNQVVGTKIAIMSDKPQTTRNKIRAVLTSEKGQIIFIDTPGVQKPR 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + + +  +K+    ++  D++L + E NS
Sbjct: 68  NKLGEFMLKQALTSLDEVDVLLYVVEANS 96


>gi|219856133|ref|YP_002473255.1| hypothetical protein CKR_2790 [Clostridium kluyveri NBRC 12016]
 gi|219569857|dbj|BAH07841.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 605

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 35/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAK---------KDVAIVTDIPGTTRDVLTIDLDL-EGYLV 269
           Y + ++G++N+GKS+L N L +         KD     D+   T D  T  ++L +G  +
Sbjct: 374 YNVSLVGYTNSGKSTLRNKLCEIAVPKESVVKDKVFEADMLFATLDTTTRAVELKDGRTI 433

Query: 270 KISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--- 324
            I+DT G   +   D+VE    K T  EV  +DL+L + +I+S+      +++D +    
Sbjct: 434 TITDTVGFINKLPHDLVE--AFKSTLEEVYYSDLLLHVVDISSEDAYQHIESVDKVLNQL 491

Query: 325 -IGTK-----------------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            I  K                  D+   Y       IS+  G  LEEL+ +I  +L    
Sbjct: 492 GINDKPVLLVFNKIDKGKTEKIEDIKDKYNGVESIYISAKQGINLEELLERISHMLPQSI 551

Query: 367 KKLPFSIP 374
           KK+ + IP
Sbjct: 552 KKVEYLIP 559


>gi|84387450|ref|ZP_00990469.1| putative GTPase YlqF [Vibrio splendidus 12B01]
 gi|84377703|gb|EAP94567.1| putative GTPase YlqF [Vibrio splendidus 12B01]
          Length = 311

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 13/104 (12%)

Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           F +E+ V+      S KE +N ++ L   ++ H  Q  +G+ IR     +I+G  N GKS
Sbjct: 75  FEKEQGVKAIAITTSVKEEVNHVMELVRKLAPHREQ--MGKNIRT----MIMGIPNVGKS 128

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           ++ N LA + +A+  + P  TR    I+L   G +  +SDT GI
Sbjct: 129 TIINCLAGRTIAVTGNQPAVTRRQQRINLQ-NGVI--LSDTPGI 169


>gi|299133863|ref|ZP_07027057.1| GTP-binding proten HflX [Afipia sp. 1NLS2]
 gi|298591699|gb|EFI51900.1| GTP-binding proten HflX [Afipia sp. 1NLS2]
          Length = 464

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 35/179 (19%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y++V L G++NAGKS+LFN L + DV    D+   T D     L L  G    ISDT
Sbjct: 225 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRALKLPHGGKAMISDT 283

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID------------- 321
            G       +     + T  EV  AD+IL +++I+ +   +  +++D             
Sbjct: 284 VGFISDLPTMLVAAFRATLEEVIEADVILHVRDISHEDAEAQERDVDQVLRQLNIDTDSG 343

Query: 322 --FIFIGTKSDLYSTYTEEYDH---------------LISSFTGEGLEELINKIKSILS 363
              I +  K D +S   EE ++               L+S+ TGEG+E L+  I+  L+
Sbjct: 344 HRLIEVWNKIDRFS--PEERENLARIAARRPPERPCFLVSAETGEGVEALLEAIEERLA 400


>gi|239904818|ref|YP_002951556.1| putative GTP-binding protein [Desulfovibrio magneticus RS-1]
 gi|239794681|dbj|BAH73670.1| putative GTP-binding protein [Desulfovibrio magneticus RS-1]
          Length = 405

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 3/63 (4%)

Query: 218 NGYKIVI--LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
            G ++VI  +G  NAGKSSL NA+  +DVAIV+D  GTT D +    +L     V + DT
Sbjct: 11  RGVRLVITFVGRRNAGKSSLINAVTGQDVAIVSDFAGTTTDPVAKPYELLPLGPVTLYDT 70

Query: 275 AGI 277
           AG+
Sbjct: 71  AGL 73


>gi|153955766|ref|YP_001396531.1| hypothetical protein CKL_3152 [Clostridium kluyveri DSM 555]
 gi|146348624|gb|EDK35160.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
          Length = 592

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 35/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAK---------KDVAIVTDIPGTTRDVLTIDLDL-EGYLV 269
           Y + ++G++N+GKS+L N L +         KD     D+   T D  T  ++L +G  +
Sbjct: 361 YNVSLVGYTNSGKSTLRNKLCEIAVPKESVVKDKVFEADMLFATLDTTTRAVELKDGRTI 420

Query: 270 KISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--- 324
            I+DT G   +   D+VE    K T  EV  +DL+L + +I+S+      +++D +    
Sbjct: 421 TITDTVGFINKLPHDLVE--AFKSTLEEVYYSDLLLHVVDISSEDAYQHIESVDKVLNQL 478

Query: 325 -IGTK-----------------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            I  K                  D+   Y       IS+  G  LEEL+ +I  +L    
Sbjct: 479 GINDKPVLLVFNKIDKGKTEKIEDIKDKYNGVESIYISAKQGINLEELLERISHMLPQSI 538

Query: 367 KKLPFSIP 374
           KK+ + IP
Sbjct: 539 KKVEYLIP 546


>gi|330448111|ref|ZP_08311759.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492302|dbj|GAA06256.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 316

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 9/85 (10%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +N I+ L   ++ H  +   G+ IR     +I+G  N GKS++ NALA + VAI  + P 
Sbjct: 98  VNQIMDLCRKLAPHREEA--GKKIRT----MIMGIPNVGKSTIINALAGRTVAITGNQPA 151

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGI 277
            TR    I+LD  G L  +SDT GI
Sbjct: 152 VTRQQQRINLD-NGVL--LSDTPGI 173


>gi|229815234|ref|ZP_04445570.1| hypothetical protein COLINT_02280 [Collinsella intestinalis DSM
           13280]
 gi|229809244|gb|EEP45010.1| hypothetical protein COLINT_02280 [Collinsella intestinalis DSM
           13280]
          Length = 340

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ + ++G  NAGKS+L NA   + VAI + +  TTR  L   ++ E   + I D
Sbjct: 43  EGFRSGF-VALVGRPNAGKSTLLNACYGEKVAITSPVAQTTRRRLRAVVNREDCQLVIVD 101

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           T GI +  D +  E  K    E+ + D+I  +
Sbjct: 102 TPGIHKPKDGLGSELNKSALGELSDVDVIAFV 133


>gi|114704562|ref|ZP_01437470.1| GTP binding protein-like [Fulvimarina pelagi HTCC2506]
 gi|114539347|gb|EAU42467.1| GTP binding protein-like [Fulvimarina pelagi HTCC2506]
          Length = 459

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 39/217 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV-----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G++NAGKS+LFN +   DV        T  P   R  L       G  +  SDT G
Sbjct: 225 VALVGYTNAGKSTLFNRMTGADVFAQNLLFATLDPTMRRTTLA-----HGTEILFSDTVG 279

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI----------- 325
                        + T  EV  AD+IL +++++    ++  +++  I             
Sbjct: 280 FISELPTHLVAAFRATLEEVIEADIILHIRDVSDPDSLAQAEDVRQILRDLEIDADDTDH 339

Query: 326 ------------GTKSDLYSTYT-----EEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
                       G++ +   T       +E  H++S++TGEG+E L+  I+  ++ K  +
Sbjct: 340 VVEVWNKIDRVDGSERERIETLAANEAEKERPHVVSAWTGEGIEALLADIERRIAGKIAE 399

Query: 369 LPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           L  ++ P   R+L  + +    L+   L +    L I
Sbjct: 400 LAVTLDPDGLRYLSWIYENASVLDREDLEDGSIHLQI 436


>gi|210615490|ref|ZP_03290617.1| hypothetical protein CLONEX_02833 [Clostridium nexile DSM 1787]
 gi|210150339|gb|EEA81348.1| hypothetical protein CLONEX_02833 [Clostridium nexile DSM 1787]
          Length = 396

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 25/166 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I I G  NAGKSS+ NA+  +D+AIV+DI GTT D +   ++L   G +V I DT G+ +
Sbjct: 14  IGIFGKRNAGKSSVINAITGQDLAIVSDIKGTTTDPVLKSMELLPLGPVVLI-DTPGLDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIGT 327
              +     IK+ +  +   D+ +L+ +            +   KE    KNI ++ +  
Sbjct: 73  EGKLGTLR-IKKAYQMLNKTDIAVLVVDGSIGMTEEDDRILTRIKE----KNIPYVIVFN 127

Query: 328 KSDLYS-----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           K DL +     T  E +   +S+  G  ++ L   I S L  +  K
Sbjct: 128 KMDLITDASVNTRQESHSLQVSAKNGYHIQALKELIASQLPKELTK 173


>gi|89053015|ref|YP_508466.1| GTP-binding protein Era [Jannaschia sp. CCS1]
 gi|88862564|gb|ABD53441.1| GTP-binding protein Era [Jannaschia sp. CCS1]
          Length = 312

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 86/182 (47%), Gaps = 30/182 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +  + ++ +  LV + DT 
Sbjct: 14  RAGF-IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQLVFV-DTP 71

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL------------------LKEINSKKEISFP 317
           G+      +++  +K  +    +AD+++L                  LKE    ++++  
Sbjct: 72  GLFRPRRRLDRAMVKAAWTGAADADVVVLLIEAHRGLTDGVQAILDGLKERTGDRKVALA 131

Query: 318 KN-IDF----IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            N ID     + +    DL + Y  +  ++IS+  G G++EL    ++ L+ +  + P+ 
Sbjct: 132 INKIDRVDAPVLLKLTEDLNAAYPFDETYMISAEKGHGVKEL----RTWLAAEVPEGPWL 187

Query: 373 IP 374
            P
Sbjct: 188 YP 189


>gi|237736577|ref|ZP_04567058.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420439|gb|EEO35486.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817]
          Length = 406

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 34/171 (19%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I I G +NAGKSSL N +  + +++V++  GTT D +   ++L   G +V I DTA
Sbjct: 8   NRVHIAIYGRTNAGKSSLINKITNQSISLVSETRGTTTDPVYKAMELLPIGPVVFI-DTA 66

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNID----- 321
           GI +T ++ E   +K+T   +   D+ LLL         +E+N +KE  + + I      
Sbjct: 67  GIDDTTELGELR-VKKTKEILNKMDIALLLISTEVVLENQELNYEKE--WIREIKKREKP 123

Query: 322 FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           FI I  K DL S               E L+E+  K+K  L  +  K+  S
Sbjct: 124 FIVILNKVDLVSV--------------EKLQEIEEKVKRELGCEISKVTTS 160


>gi|86605806|ref|YP_474569.1| GTP-binding protein [Synechococcus sp. JA-3-3Ab]
 gi|86554348|gb|ABC99306.1| GTP-binding protein [Synechococcus sp. JA-3-3Ab]
          Length = 506

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIR 278
           K+V+ G  +AGK+SL NAL  + V  V    GTT+ V   D DL G  + V+I D  GI 
Sbjct: 134 KVVVFGTGSAGKTSLVNALLGRRVGAVGATLGTTQAVAVYDWDLPGIPHPVQIVDCPGIL 193

Query: 279 E 279
           E
Sbjct: 194 E 194


>gi|325106043|ref|YP_004275697.1| GTP-binding protein Era [Pedobacter saltans DSM 12145]
 gi|324974891|gb|ADY53875.1| GTP-binding protein Era [Pedobacter saltans DSM 12145]
          Length = 292

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L N L  + +AI+T    TTR  +   ++ E Y +  SDT GI +  
Sbjct: 8   VSIVGKPNAGKSTLMNTLVGEKMAIITSKAQTTRHRIIGIVNEEDYQIVFSDTPGIIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
             +++  +      + +AD++L + +IN K
Sbjct: 68  YKLQESMMDAVQGSLVDADILLFVTDINEK 97


>gi|72161252|ref|YP_288909.1| GTP-binding protein Era [Thermobifida fusca YX]
 gi|71914984|gb|AAZ54886.1| Small GTP-binding protein domain [Thermobifida fusca YX]
          Length = 315

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 10/138 (7%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           D ++ +S     E  R+G+ +  +G  N GKS+L NAL  + VAI +D P TTR  +   
Sbjct: 5   DTTTPLSAPTQQEGFRSGF-VCFIGRPNVGKSTLMNALVGRKVAITSDRPQTTRRTIRGI 63

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKE---GIKRTFLEVE------NADLILLLKEINSKK 312
           +  E   + I DT G+ +   ++ +     ++ T +EV+       AD  +   +    +
Sbjct: 64  VHRENAQLIIVDTPGLHKPRTLLGERLDSLVRSTLVEVDVIGFCIPADEPIGRGDTYIAR 123

Query: 313 EISFPKNIDFIFIGTKSD 330
           E++  K    + I TK+D
Sbjct: 124 ELAQQKETPVVAIVTKTD 141


>gi|68535955|ref|YP_250660.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium
           jeikeium K411]
 gi|68263554|emb|CAI37042.1| cytidylate kinase [Corynebacterium jeikeium K411]
          Length = 777

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++    ++ ++G  N GKSSL N +  ++ ++V ++ GTT D +   ++LE    K  DT
Sbjct: 511 VVSGPRRVALVGRPNVGKSSLLNKITGEERSVVNNVAGTTVDPVDSIVELEEKTWKFVDT 570

Query: 275 AGIRE 279
           AGIR+
Sbjct: 571 AGIRK 575



 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 28/184 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 345 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWSGRRFWVQDTGGWDPDA 404

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
             +     ++    +E AD+I+ + +    I S  E+   K     +  I +  K D  +
Sbjct: 405 KGIHAAIARQAETAMETADVIVFVVDSKVGITSTDEVIARKLQRSKVPVIVVANKCDADA 464

Query: 334 TYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
              +         +  + +S+  G+G  ++++++  +            P H R L  +S
Sbjct: 465 QLGDVAEFWALGLDNPYPVSAQHGKGAADVMDEVLRVF-----------PEHPRELSVVS 513

Query: 385 QTVR 388
              R
Sbjct: 514 GPRR 517


>gi|313772407|gb|EFS38373.1| GTP-binding protein Era [Propionibacterium acnes HL074PA1]
 gi|313807417|gb|EFS45904.1| GTP-binding protein Era [Propionibacterium acnes HL087PA2]
 gi|313809925|gb|EFS47646.1| GTP-binding protein Era [Propionibacterium acnes HL083PA1]
 gi|313818463|gb|EFS56177.1| GTP-binding protein Era [Propionibacterium acnes HL046PA2]
 gi|313820226|gb|EFS57940.1| GTP-binding protein Era [Propionibacterium acnes HL036PA1]
 gi|313822965|gb|EFS60679.1| GTP-binding protein Era [Propionibacterium acnes HL036PA2]
 gi|313825107|gb|EFS62821.1| GTP-binding protein Era [Propionibacterium acnes HL063PA1]
 gi|313830256|gb|EFS67970.1| GTP-binding protein Era [Propionibacterium acnes HL007PA1]
 gi|313834057|gb|EFS71771.1| GTP-binding protein Era [Propionibacterium acnes HL056PA1]
 gi|314925454|gb|EFS89285.1| GTP-binding protein Era [Propionibacterium acnes HL036PA3]
 gi|314960100|gb|EFT04202.1| GTP-binding protein Era [Propionibacterium acnes HL002PA2]
 gi|314973262|gb|EFT17358.1| GTP-binding protein Era [Propionibacterium acnes HL053PA1]
 gi|314975937|gb|EFT20032.1| GTP-binding protein Era [Propionibacterium acnes HL045PA1]
 gi|314978306|gb|EFT22400.1| GTP-binding protein Era [Propionibacterium acnes HL072PA2]
 gi|314984045|gb|EFT28137.1| GTP-binding protein Era [Propionibacterium acnes HL005PA1]
 gi|314987808|gb|EFT31899.1| GTP-binding protein Era [Propionibacterium acnes HL005PA2]
 gi|314990029|gb|EFT34120.1| GTP-binding protein Era [Propionibacterium acnes HL005PA3]
 gi|315080746|gb|EFT52722.1| GTP-binding protein Era [Propionibacterium acnes HL078PA1]
 gi|315084416|gb|EFT56392.1| GTP-binding protein Era [Propionibacterium acnes HL027PA2]
 gi|315085756|gb|EFT57732.1| GTP-binding protein Era [Propionibacterium acnes HL002PA3]
 gi|315088826|gb|EFT60802.1| GTP-binding protein Era [Propionibacterium acnes HL072PA1]
 gi|315096174|gb|EFT68150.1| GTP-binding protein Era [Propionibacterium acnes HL038PA1]
 gi|327326091|gb|EGE67881.1| GTP-binding protein Era [Propionibacterium acnes HL096PA2]
 gi|327332038|gb|EGE73775.1| GTP-binding protein Era [Propionibacterium acnes HL096PA3]
 gi|327443241|gb|EGE89895.1| GTP-binding protein Era [Propionibacterium acnes HL013PA2]
 gi|327446027|gb|EGE92681.1| GTP-binding protein Era [Propionibacterium acnes HL043PA2]
 gi|327447995|gb|EGE94649.1| GTP-binding protein Era [Propionibacterium acnes HL043PA1]
 gi|328753568|gb|EGF67184.1| GTP-binding protein Era [Propionibacterium acnes HL020PA1]
 gi|328760408|gb|EGF73976.1| GTP-binding protein Era [Propionibacterium acnes HL099PA1]
          Length = 342

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 27/192 (14%)

Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E 
Sbjct: 30  ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 89

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316
             + + DT G+ +   ++ +      F      D+I +    N +          +I+  
Sbjct: 90  SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAEL 149

Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362
           P+    I + TKSDL S     E+   I    GE G+E            E I++++ ++
Sbjct: 150 PRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDVI 209

Query: 363 SNKFKKLPFSIP 374
           ++   + P   P
Sbjct: 210 ASLLPEGPAYYP 221


>gi|215427036|ref|ZP_03424955.1| GTP-binding protein EngA [Mycobacterium tuberculosis T92]
 gi|289750270|ref|ZP_06509648.1| GTP-binding protein engA [Mycobacterium tuberculosis T92]
 gi|289690857|gb|EFD58286.1| GTP-binding protein engA [Mycobacterium tuberculosis T92]
          Length = 334

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD +  D    G    + DT G     
Sbjct: 29  VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 88

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++   ++  + +  AD ++L+
Sbjct: 89  KGLQRLVAEQASVAMRTADAVILV 112



 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA    ++V +  GTT D +   ++L G + +  DTAG+R
Sbjct: 201 RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLR 258


>gi|126658532|ref|ZP_01729679.1| hypothetical protein CY0110_25461 [Cyanothece sp. CCY0110]
 gi|126620119|gb|EAZ90841.1| hypothetical protein CY0110_25461 [Cyanothece sp. CCY0110]
          Length = 344

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 33/249 (13%)

Query: 182 EDVQN-FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E +Q+  + K +LN       +I+ ++++G+L        K+VI G  +AGK+SL NAL 
Sbjct: 105 ETIQDKVAQKALLNR----SQEIAENLTRGEL--------KVVIFGTGSAGKTSLVNALL 152

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETD-DIVEKEGIKRTFLEVE 297
            + +  V    GTT+   T  L L+G    + I+DT GI E   +  E+E + R      
Sbjct: 153 GEIIGQVQATMGTTKIGETYCLKLKGLSREILITDTPGILEAGIEGTEREQLARQL--AT 210

Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKSDL----YSTYTEEYDHLISSFTGEGLEE 353
            ADL+L + + + ++    P  I  + IG +S L       YTEE ++ I     E ++ 
Sbjct: 211 EADLLLFVVDNDLRQSEYKPLQI-LVDIGKRSLLVFNKVDLYTEEEENQIIQKLKERVKS 269

Query: 354 LI--NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENL 409
            I    + S+ +N     P +  S        S  +  L   +A++   + G D+IA+N+
Sbjct: 270 FIPEQDVISVAAN-----PQTFASETGQTIQPSPDILPLIKRLAAILRAE-GEDLIADNI 323

Query: 410 RLASVSLGK 418
            L S  LG+
Sbjct: 324 LLQSQRLGE 332


>gi|319427721|gb|ADV55795.1| GTP-binding proten HflX [Shewanella putrefaciens 200]
          Length = 435

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 34/227 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFNAL   DV     +  T    L   LDL    V ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNALTSSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDF-----IFIGT 327
             D+V     K T  E   A+L+L + +        N ++  S  K+ID      + +  
Sbjct: 259 PHDLV--AAFKATLQETRQAELLLHIVDCADENMADNFEQVQSVLKDIDADEVMQLIVCN 316

Query: 328 KSDLYSTYTE--EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           K DL    T   EYD         +S+    G + L+  I  ++    ++L   IP+   
Sbjct: 317 KIDLLEDVTPRIEYDDQGKPIRVWVSAQKRLGFDLLLKAITELIGEVIRELTLRIPATAG 376

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419
           H  +L Q  R   +      D G  I++  L      RLA  S G++
Sbjct: 377 H--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDADWRRLAKQSQGEL 421


>gi|313893454|ref|ZP_07827024.1| hydrogenase maturation GTPase HydF [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313441897|gb|EFR60319.1| hydrogenase maturation GTPase HydF [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 433

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I   G  NAGKS+L N L  + V++V+D+ GTT D ++  ++ L    V I+DTAG
Sbjct: 8   NRVHIGFFGRCNAGKSTLINMLTDQPVSLVSDVAGTTTDPVSKSMEILPLGPVVITDTAG 67

Query: 277 IRETDDI 283
           I +T ++
Sbjct: 68  IDDTTEL 74


>gi|311113256|ref|YP_003984478.1| GTP-binding protein [Rothia dentocariosa ATCC 17931]
 gi|310944750|gb|ADP41044.1| GTP-binding protein [Rothia dentocariosa ATCC 17931]
          Length = 549

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 27/176 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L    V    A+   +  T R   T D    G    +SDT G 
Sbjct: 306 VAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVRKAQTPD----GIGYTLSDTVGF 361

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISF---PKNIDFIFI 325
             +      E  + T  EV +AD+IL +          +I + +E+      + I  I  
Sbjct: 362 VRSLPTQLVEAFRSTLEEVADADVILHVVDASHPDPEGQIRAVREVIADLDARRIPEIIA 421

Query: 326 GTKSD------LYSTYTEEYDHLI-SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             K+D      L      E +H+I S+ TGEG++EL  KI   +     ++   IP
Sbjct: 422 LNKADAADPFILERMRQRESNHVIVSARTGEGIDELKQKIADTIPRPSLEVKLLIP 477


>gi|154505209|ref|ZP_02041947.1| hypothetical protein RUMGNA_02722 [Ruminococcus gnavus ATCC 29149]
 gi|153794407|gb|EDN76827.1| hypothetical protein RUMGNA_02722 [Ruminococcus gnavus ATCC 29149]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 25/167 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I I G  NAGKSSL NALA + V+IV+D  GTT D +   ++L   G +V I DT G+ +
Sbjct: 14  IGIFGKRNAGKSSLINALAGQPVSIVSDFKGTTTDPVKKAMELLPLGPVVLI-DTPGLDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSD 330
           T ++     I++T   +   D+ LL+         ++I   ++I   K I F+    K D
Sbjct: 73  TGELGSLR-IEKTQQILNTTDIALLVIDGQLGITEEDIQILQQIR-KKQIPFVIAVNKMD 130

Query: 331 LYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           L        D +       +S+  G  + EL    K +L+ +  + P
Sbjct: 131 LAPASPVLPDEISPEQVLYVSAAAGTQIHEL----KELLAKQLGQTP 173


>gi|90577937|ref|ZP_01233748.1| putative GTPase [Vibrio angustum S14]
 gi|90441023|gb|EAS66203.1| putative GTPase [Vibrio angustum S14]
          Length = 317

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 9/85 (10%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +N I+ L   ++ H  +   G+ IR     +I+G  N GKS++ NALA + VAI  + P 
Sbjct: 99  VNQIMELCRKLAPHREEA--GKKIRT----MIMGIPNVGKSTIINALAGRTVAITGNQPA 152

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGI 277
            TR    I+LD  G L  +SDT GI
Sbjct: 153 VTRQQQRINLD-NGVL--LSDTPGI 174


>gi|253581692|ref|ZP_04858916.1| GTP binding protein [Fusobacterium varium ATCC 27725]
 gi|251836041|gb|EES64578.1| GTP binding protein [Fusobacterium varium ATCC 27725]
          Length = 297

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+L        DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNLNDNQYIFIDTPGIHKAK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            ++ +         +++ D+IL L  ++  +EIS
Sbjct: 66  HLLGEYMTNSAIRVLKDVDVILFL--LDGSQEIS 97


>gi|289427040|ref|ZP_06428756.1| GTP-binding protein Era [Propionibacterium acnes J165]
 gi|295130499|ref|YP_003581162.1| GTP-binding protein Era [Propionibacterium acnes SK137]
 gi|289159509|gb|EFD07697.1| GTP-binding protein Era [Propionibacterium acnes J165]
 gi|291377214|gb|ADE01069.1| GTP-binding protein Era [Propionibacterium acnes SK137]
 gi|332675335|gb|AEE72151.1| GTP-binding protein Era [Propionibacterium acnes 266]
          Length = 340

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 27/192 (14%)

Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E 
Sbjct: 28  ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 87

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316
             + + DT G+ +   ++ +      F      D+I +    N +          +I+  
Sbjct: 88  SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAEL 147

Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362
           P+    I + TKSDL S     E+   I    GE G+E            E I++++ ++
Sbjct: 148 PRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDVI 207

Query: 363 SNKFKKLPFSIP 374
           ++   + P   P
Sbjct: 208 ASLLPEGPAYYP 219


>gi|260578662|ref|ZP_05846570.1| ribosome-associated GTPase EngA [Corynebacterium jeikeium ATCC
           43734]
 gi|258603159|gb|EEW16428.1| ribosome-associated GTPase EngA [Corynebacterium jeikeium ATCC
           43734]
          Length = 777

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++    ++ ++G  N GKSSL N +  ++ ++V ++ GTT D +   ++LE    K  DT
Sbjct: 511 VVSGPRRVALVGRPNVGKSSLLNKITGEERSVVNNVAGTTVDPVDSIVELEEKTWKFVDT 570

Query: 275 AGIRE 279
           AGIR+
Sbjct: 571 AGIRK 575



 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 28/184 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 345 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWSGRRFWVQDTGGWDPDA 404

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
             +     ++    +E AD+I+ + +    I S  E+   K     +  I +  K D  +
Sbjct: 405 KGIHAAIARQAETAMETADVIVFVVDSKVGITSTDEVIARKLQRSKVPVIVVANKCDADA 464

Query: 334 TYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
              +         +  + +S+  G+G  ++++++  +            P H R L  +S
Sbjct: 465 QLGDVAEFWALGLDNPYPVSAQHGKGAADVMDEVLRVF-----------PEHPRELSVVS 513

Query: 385 QTVR 388
              R
Sbjct: 514 GPRR 517


>gi|300069855|gb|ADJ59255.1| GTP-binding protein YqeH [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 401

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 15/103 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ K     +DV   +  PGTT D + I LD +  L
Sbjct: 195 EHYRRGRDVYVVGVTNVGKSTLINAIIKSASGSEDVITTSRFPGTTLDKIEIPLDEDSAL 254

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           +   DT GI     +         +LE E+   +   KEIN K
Sbjct: 255 I---DTPGIIHRGQMAH-------YLEPEDLKYVSPRKEINPK 287


>gi|257784594|ref|YP_003179811.1| GTP-binding protein Era [Atopobium parvulum DSM 20469]
 gi|257473101|gb|ACV51220.1| GTP-binding protein Era [Atopobium parvulum DSM 20469]
          Length = 312

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  + GKS+L NA   + VAI + +  TTR      ++ E   + I DT G
Sbjct: 18  RSGF-VALVGRPSVGKSTLLNACMGQKVAIASPVAQTTRRRFRAVVNGENSQLVIVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           + +  D + KE  K    E+ +AD+I  L
Sbjct: 77  LHKPKDALGKELNKAALGELNDADVIAFL 105


>gi|119493901|ref|ZP_01624464.1| Small GTP-binding protein domain protein [Lyngbya sp. PCC 8106]
 gi|119452341|gb|EAW33534.1| Small GTP-binding protein domain protein [Lyngbya sp. PCC 8106]
          Length = 550

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 34/220 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDT 274
           R   K+VI G  +AGK+S+ NAL  + V  V    GTT    T  L L+G    + I+DT
Sbjct: 128 RGNIKVVIFGTGSAGKTSIVNALMGRMVGKVNAPMGTTEVGETYHLQLKGLEREILITDT 187

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLY-- 332
            GI E  +     G     L  E ADL+L + + N  ++  +        IG +S L   
Sbjct: 188 PGILEAGEAGSHRGTLARTLATE-ADLLLFVVD-NDLRQSEYQPLYSLAEIGKRSLLVFN 245

Query: 333 --STYTEEYDHLISSFTGEGLEELINK--IKSILSN----------KFKKLPFSIPSHKR 378
               YTE+  ++I S   E ++  I+   I  + +N          +FK  P  +P  + 
Sbjct: 246 KIDRYTEDDQNIILSRLEERVKTFISPEDIVRVAANPQGVILDTGEQFKPEPDIMPLIR- 304

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
                       +MA +   + G D+IA+N+ L S  LG+
Sbjct: 305 ------------QMAKVLRAE-GEDLIADNILLQSQRLGE 331


>gi|225018650|ref|ZP_03707842.1| hypothetical protein CLOSTMETH_02600 [Clostridium methylpentosum
           DSM 5476]
 gi|224948558|gb|EEG29767.1| hypothetical protein CLOSTMETH_02600 [Clostridium methylpentosum
           DSM 5476]
          Length = 310

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 3/102 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSL NAL    +AIVT+ P TTR  +T  L  E       DT G+ +  
Sbjct: 25  IAIVGKPNVGKSSLLNALTGHKIAIVTNRPQTTRTRITGVLTQEETQYVFIDTPGLLKAR 84

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           + + ++ +K     V + D  +L+ E     E++ P  +D I
Sbjct: 85  NKLGEKMVKTVRESVADVDAAVLVVEPTG--EVN-PAELDLI 123


>gi|157692414|ref|YP_001486876.1| HflX family GTP-binding protein [Bacillus pumilus SAFR-032]
 gi|157681172|gb|ABV62316.1| HflX family GTP-binding protein [Bacillus pumilus SAFR-032]
          Length = 420

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 217 RNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +NG ++I I+G++NAGKS+LFN L   D +   D+   T D +T  + L  GY V ISDT
Sbjct: 196 KNGVFQIAIVGYTNAGKSTLFNQLTDAD-SHEEDLLFATLDPMTRKMTLASGYSVLISDT 254

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          + T  EV+ AD +L
Sbjct: 255 VGFIQDLPTTLIAAFRSTLEEVKEADYLL 283


>gi|150017393|ref|YP_001309647.1| ferrous iron transport protein B [Clostridium beijerinckii NCIMB
           8052]
 gi|149903858|gb|ABR34691.1| ferrous iron transport protein B [Clostridium beijerinckii NCIMB
           8052]
          Length = 602

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIR 278
           + +LG+ N GK++L+N L   +   V + PG T D        EG+L   +KI D  GI 
Sbjct: 4   VALLGNPNVGKTTLYNLLTGSN-QYVGNWPGVTVD------KKEGFLFESIKIVDLPGIY 56

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
             D    +E + + FLE  + DLIL
Sbjct: 57  AMDTFSNEEKVSKQFLEEGDVDLIL 81


>gi|307153467|ref|YP_003888851.1| GTP-binding protein Era [Cyanothece sp. PCC 7822]
 gi|306983695|gb|ADN15576.1| GTP-binding protein Era [Cyanothece sp. PCC 7822]
          Length = 318

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 215 IIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           I   G+K   + I+G  N GKS+L N L  + VAI + +  TTR+ L   L  +   +  
Sbjct: 18  IAPEGFKSGFVAIIGRPNVGKSTLMNQLVGQKVAITSPVAQTTRNRLQGILTTDQAQIIF 77

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            DT GI +    + K  +K   + +   DL+LL+
Sbjct: 78  VDTPGIHKPHHELGKVLVKNAQIAINAVDLVLLV 111


>gi|193213835|ref|YP_001995034.1| GTP-binding protein Era [Chloroherpeton thalassium ATCC 35110]
 gi|193087312|gb|ACF12587.1| GTP-binding protein Era [Chloroherpeton thalassium ATCC 35110]
          Length = 321

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 27/191 (14%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRETDD 282
           ILG  NAGKS+L N L  + ++IVT  P TTR  VL I  D    +V + DT GI +   
Sbjct: 29  ILGEPNAGKSTLLNVLLGEKISIVTPKPQTTRKRVLGIFTDKSCQIV-LLDTPGIMKPKY 87

Query: 283 IVEKEGIKRTFLEVENADLILLLKEI--------------------NSKKEISFPKN-ID 321
            + +  +      VE++D+++LL ++                    N+KK +    N +D
Sbjct: 88  KLHEAMLDLADKSVEDSDVLVLLLDVEKYQKGKAELKADLAFQRIANTKKPVILVLNKVD 147

Query: 322 FIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            I      +L + ++ EY       +S+  G  + E +  +   L       P  I S  
Sbjct: 148 LITKDASLELIAKFSSEYPFREIVPLSALKGYNIREFLKAVVPYLPASPPLYPPDILSTA 207

Query: 378 RHLYHLSQTVR 388
              + +S+ +R
Sbjct: 208 PERFFVSEIIR 218


>gi|16125990|ref|NP_420554.1| GTP-binding protein HflX [Caulobacter crescentus CB15]
 gi|13423166|gb|AAK23722.1| GTP-binding protein HflX [Caulobacter crescentus CB15]
          Length = 427

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 32/171 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           + ++G++NAGKS+LFN L + +V +  D+   T D  + T+ L  +G    +SDT G   
Sbjct: 197 VALVGYTNAGKSTLFNRLTEAEV-LAKDMLFATLDPTLRTVKLP-DGRPAIMSDTVGF-- 252

Query: 280 TDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTY 335
             D+  +  E  + T  EV+ AD++L ++++ +    +  ++++ +   +G   D   T 
Sbjct: 253 ISDLPHELVEAFRATLEEVQEADVVLHVRDVANPDSEAQARDVETVLAELGVTLDEGKTV 312

Query: 336 TEEYDHL----------------------ISSFTGEGLEELINKIKSILSN 364
            E ++ +                      +S+ TGEG E L+ +I  ++ +
Sbjct: 313 VEVWNKVDLLSEDDREIVEGQARRNDASAVSAVTGEGCEALLRRIAGLIDD 363


>gi|330800863|ref|XP_003288452.1| hypothetical protein DICPUDRAFT_34085 [Dictyostelium purpureum]
 gi|325081511|gb|EGC35024.1| hypothetical protein DICPUDRAFT_34085 [Dictyostelium purpureum]
          Length = 451

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT--AGIR 278
           ++  LG SNAGKSSL NA+  +D+A V+  PG T+ +    L  + YLV +     A + 
Sbjct: 214 QVAFLGKSNAGKSSLLNAILNRDMAYVSKKPGCTKSINFYQLWEKIYLVDLPGYGFAKVS 273

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           +    V  E I    L   N   I LL
Sbjct: 274 KKKSSVWGEAISEYLLTTPNLFKIFLL 300


>gi|291276313|ref|YP_003516085.1| ferrous iron transport protein [Helicobacter mustelae 12198]
 gi|290963507|emb|CBG39338.1| ferrous iron transport protein [Helicobacter mustelae 12198]
          Length = 719

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IV++G  N GK+SL N L+   +  V +  G T +     L  E  L +I D  GI   +
Sbjct: 6   IVLVGQPNVGKTSLINYLSGAHLK-VGNFTGVTIEKAETSLIYENTLFEIIDLPGIYALE 64

Query: 282 DIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPKNI 320
           D   +E + + FLE ++ DLIL +L   N ++ ++    I
Sbjct: 65  DFTMEEKVTKDFLENQHYDLILNVLDSTNLERNLTLSTQI 104


>gi|24114254|ref|NP_708764.1| hypothetical protein SF2990 [Shigella flexneri 2a str. 301]
 gi|12643221|gb|AAK00473.1| unknown [Shigella flexneri 2a]
 gi|24053407|gb|AAN44471.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
          Length = 290

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V 
Sbjct: 17  LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
              L   G+ + I+D   + E+ D   E E + R  L     DL+L L
Sbjct: 76  RFRLSGHGHSMVITDLPEVGESRDRDAEYEALYRDIL--PELDLVLWL 121


>gi|251788133|ref|YP_003002854.1| putative GTPase HflX [Dickeya zeae Ech1591]
 gi|247536754|gb|ACT05375.1| GTP-binding proten HflX [Dickeya zeae Ech1591]
          Length = 433

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 37/217 (17%)

Query: 194 NDILFLKNDISSHIS----------QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
            D   L+N IS  +S          QG+          + ++G++NAGKS+LFN +   D
Sbjct: 162 TDRRLLRNRISQILSRLERVEKQREQGRRARTRAEVPTVSLVGYTNAGKSTLFNRMTSAD 221

Query: 244 VAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300
           V     +  T    L  ID+D  G  V ++DT G IR+   D+V     K T  E   A 
Sbjct: 222 VYAADQLFATLDPTLRRIDVDDVGDTV-LADTVGFIRDLPHDLV--AAFKATLQETREAT 278

Query: 301 LILLL---------KEINSKKEISF---PKNIDFIFIGTKSDLYSTYTEEYDH------- 341
           L+L +         + I++  E+       +I F+ +  K D     T   D        
Sbjct: 279 LLLHVVDASDTRVDENIDAVNEVLTEIEADDIPFLLVMNKIDQLENITPRIDRDEENRPV 338

Query: 342 --LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
              +S+ TGEG+  L+  +   LS +       +P H
Sbjct: 339 RVWLSAQTGEGIPLLLQALTERLSGEIAHYSLHLPPH 375


>gi|221234757|ref|YP_002517193.1| GTP-binding protein hflX [Caulobacter crescentus NA1000]
 gi|220963929|gb|ACL95285.1| GTP-binding protein hflX [Caulobacter crescentus NA1000]
          Length = 446

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 32/171 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           + ++G++NAGKS+LFN L + +V +  D+   T D  + T+ L  +G    +SDT G   
Sbjct: 216 VALVGYTNAGKSTLFNRLTEAEV-LAKDMLFATLDPTLRTVKLP-DGRPAIMSDTVGF-- 271

Query: 280 TDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTY 335
             D+  +  E  + T  EV+ AD++L ++++ +    +  ++++ +   +G   D   T 
Sbjct: 272 ISDLPHELVEAFRATLEEVQEADVVLHVRDVANPDSEAQARDVETVLAELGVTLDEGKTV 331

Query: 336 TEEYDHL----------------------ISSFTGEGLEELINKIKSILSN 364
            E ++ +                      +S+ TGEG E L+ +I  ++ +
Sbjct: 332 VEVWNKVDLLSEDDREIVEGQARRNDASAVSAVTGEGCEALLRRIAGLIDD 382


>gi|254471030|ref|ZP_05084433.1| ferrous iron transport protein B [Pseudovibrio sp. JE062]
 gi|211960172|gb|EEA95369.1| ferrous iron transport protein B [Pseudovibrio sp. JE062]
          Length = 607

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 4/147 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS LFN +     A V + PG T +V+   + L+G  V+  D  GI   
Sbjct: 14  RIALIGQPNTGKSMLFNRITNAR-ASVGNWPGITVNVMRARVPLDGRKVEYVDLPGIYNL 72

Query: 281 DDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +   E E +   FL     DL I+++     +++I  P  +    +G  + +     +E 
Sbjct: 73  EGGSEDEAVVNRFLTKFPVDLVIIVINAAQIERQILMPLQVK--ALGLPAVVMLNMCDEA 130

Query: 340 DHLISSFTGEGLEELINKIKSILSNKF 366
             L  +F  E L++ +    +++S K+
Sbjct: 131 HKLGITFDLEKLQDSLKMPVALISAKY 157


>gi|296415306|ref|XP_002837331.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633195|emb|CAZ81522.1| unnamed protein product [Tuber melanosporum]
          Length = 337

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 10/120 (8%)

Query: 188 SSKEVLNDILFLKNDISSHI-SQGKLGEI-IRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           SS ++   + F       H+ S  K  EI      ++  LG SN GKSSL NAL  K +A
Sbjct: 64  SSAQLGTAVKFFTRRQPRHMWSASKFKEICFGTAPEVAFLGRSNVGKSSLLNALLDKPLA 123

Query: 246 IVTDIPGTTR--------DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
             +  PG TR        +   + LD+ GY     D  G++    +  +  ++R FL V+
Sbjct: 124 HTSSKPGRTRLLNAYSIANGRGVLLDMPGYGHNSRDEWGVQVMKYLQRRRELRRAFLLVD 183


>gi|218530504|ref|YP_002421320.1| GTP-binding protein Era [Methylobacterium chloromethanicum CM4]
 gi|240138863|ref|YP_002963338.1| GTP-binding protein [Methylobacterium extorquens AM1]
 gi|218522807|gb|ACK83392.1| GTP-binding protein Era [Methylobacterium chloromethanicum CM4]
 gi|240008835|gb|ACS40061.1| GTP-binding protein [Methylobacterium extorquens AM1]
          Length = 326

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 32/191 (16%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG- 266
           +QG+  E  R G+ + ++G  NAGKS+L NAL    V+IV+    TTR  L   + +EG 
Sbjct: 23  AQGQPREETRAGF-VALIGVPNAGKSTLLNALVGAKVSIVSRKVQTTR-ALVRGIVMEGN 80

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------- 312
             + + DT GI      +++  +   +    +AD I LL  I+++K              
Sbjct: 81  AQIVLVDTPGIFAPKRRLDRAMVHSAWSGAADADAICLL--IDARKGVDEEVETILRRLP 138

Query: 313 EISFPK-----NIDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           E+  PK      ID I     +   + L +    E   LIS+  G+G+ +L    +  L+
Sbjct: 139 EVKRPKILILNKIDLIARERLLELVAKLNAMVPFEDTFLISALKGDGIADL----RKALA 194

Query: 364 NKFKKLPFSIP 374
            +    P+  P
Sbjct: 195 ARMPPSPWLYP 205


>gi|11497862|ref|NP_069084.1| iron (II) transporter (feoB-1) [Archaeoglobus fulgidus DSM 4304]
 gi|2650395|gb|AAB90987.1| iron (II) transporter (feoB-1) [Archaeoglobus fulgidus DSM 4304]
          Length = 639

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 9/84 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           K+ ++G+ N GKS+LF AL  K  A +++ PGTT D+    L DLE     I DT G+  
Sbjct: 16  KVALVGNPNVGKSALFYALTGK-YATISNYPGTTVDIAVAKLGDLE-----IIDTPGMHS 69

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
              +  +E + R  L  E ADL++
Sbjct: 70  LVPVTGEEEVARKLL--EEADLVV 91


>gi|168335124|ref|ZP_02693232.1| GTP-binding protein Era [Epulopiscium sp. 'N.t. morphotype B']
          Length = 303

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ I I+G +N GKS+L N L  + +AI+++ P TTR  +   L    +     DT G
Sbjct: 6   KSGF-ISIIGRANVGKSTLMNRLVGEKIAIMSNKPQTTRHQVRTILTTNDFQAVFIDTPG 64

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           I   +  + K  +K     +   D+IL L E +++
Sbjct: 65  IHTPNTELGKFMVKAAHTTLNEVDIILFLIETDTR 99


>gi|42520585|ref|NP_966500.1| GTP-binding protein Era [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410324|gb|AAS14434.1| GTP-binding protein Era [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 294

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 23/165 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G  NAGKS+L N++  K +AIVT    TTR  +          +  +D+ GI   +
Sbjct: 9   VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQIVFTDSPGIFSAE 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFPKNI---------DFIFIGTKSDL 331
             +EK  +K  +  V+++D+ L L ++ N  K I   K I           I +  K+DL
Sbjct: 69  TKLEKALVKSAWSAVKDSDITLSLVDVSNYLKNIERIKTIFMRLQRTKGRCILVINKTDL 128

Query: 332 YST-------------YTEEYDHLISSFTGEGLEELINKIKSILS 363
                           Y  E   +IS+   +GL +L+N +  + S
Sbjct: 129 VKRPELKMAHEHLNLLYKFEKVFMISALKNDGLSDLMNYLSEVAS 173


>gi|194014979|ref|ZP_03053596.1| GTP-binding protein HflX [Bacillus pumilus ATCC 7061]
 gi|194014005|gb|EDW23570.1| GTP-binding protein HflX [Bacillus pumilus ATCC 7061]
          Length = 420

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 217 RNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +NG ++I I+G++NAGKS+LFN L   D +   D+   T D +T  + L  GY V ISDT
Sbjct: 196 KNGVFQIAIVGYTNAGKSTLFNQLTDAD-SHEEDLLFATLDPMTRKMTLASGYSVLISDT 254

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          + T  EV+ AD +L
Sbjct: 255 VGFIQDLPTTLIAAFRSTLEEVKEADYLL 283


>gi|227504875|ref|ZP_03934924.1| GTP-binding protein HflX [Corynebacterium striatum ATCC 6940]
 gi|227198566|gb|EEI78614.1| GTP-binding protein HflX [Corynebacterium striatum ATCC 6940]
          Length = 486

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 30/200 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           +I I G++NAGKSSL NA+    V +V D    T D  T   +L +G  V  +DT G   
Sbjct: 259 QIAIAGYTNAGKSSLINAMTGAGV-LVEDALFATLDPTTRRAELADGRQVVFTDTVGFVR 317

Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF----------PKNI 320
                  E  K T  EV  AD++L          +K+I +  ++ +          P  I
Sbjct: 318 HLPTQLVEAFKSTLEEVLAADIMLHVVDGSDPFPIKQIEAVNKVIYDIVKETGEQAPPEI 377

Query: 321 DFIFIGTKSD--LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             I    ++D  + +      DH     +S+ TGEG++EL ++I+  L+++   +   +P
Sbjct: 378 IVINKIDQADPLVLAEIRHVLDHENVVYVSAHTGEGIDELTSRIELFLNSRDSHVRLLVP 437

Query: 375 SHKRHL---YHLSQTVRYLE 391
             +  +    H   TVRY E
Sbjct: 438 FTRGDVVSRVHAEGTVRYEE 457


>gi|329850745|ref|ZP_08265590.1| GTP-binding protein Era [Asticcacaulis biprosthecum C19]
 gi|328841060|gb|EGF90631.1| GTP-binding protein Era [Asticcacaulis biprosthecum C19]
          Length = 317

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 47/201 (23%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+ + I+G  NAGKS+L N L    V+IVT    TTR  V  I LD E  ++ + DT 
Sbjct: 7   RCGF-VAIIGAPNAGKSTLVNQLVGTKVSIVTQKVQTTRFPVRGIALDEEVQMI-LVDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL------------------------------- 304
           GI +    +++  +   +   E+AD ++L                               
Sbjct: 65  GIFKPRRRLDRAMVASAWGGAEDADCVVLLVDAAAQLAVKGGGEVKATGADHKAVEDVEM 124

Query: 305 ----LKEINSKKEISFPKNIDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
               LK  N K  ++  K ID +     +    DLY+T   E   +IS+  G G+++L  
Sbjct: 125 IVEGLKSANRKAILALNK-IDLMKSENLLAIADDLYNTGIVEDVLMISAEKGHGVKDL-- 181

Query: 357 KIKSILSNKFKKLPFSIPSHK 377
             K +L+ +  + P+  P  +
Sbjct: 182 --KKLLAKRMPQSPWLYPEDQ 200


>gi|22298991|ref|NP_682238.1| ferrous iron transport protein B [Thermosynechococcus elongatus
           BP-1]
 gi|22295173|dbj|BAC09000.1| ferrous iron transport protein B [Thermosynechococcus elongatus
           BP-1]
          Length = 596

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            I +LG  N GKS+ FN +A    A V + PG T D+   ++ L G  VK+ D  GI + 
Sbjct: 5   TIALLGLPNTGKSTFFNRIAAAR-ARVGNWPGITVDLAEAEMSLNGERVKLVDLPGIYDL 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
                 E I R F +     L+L++
Sbjct: 64  AGTAADETIVREFFQRVPVRLVLVI 88


>gi|149277443|ref|ZP_01883584.1| GTP-binding protein [Pedobacter sp. BAL39]
 gi|149231676|gb|EDM37054.1| GTP-binding protein [Pedobacter sp. BAL39]
          Length = 292

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 10/95 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + ++I+T    TTR  +   ++ E Y +  SDT GI    
Sbjct: 8   VSIIGKPNVGKSTLMNALIGEKLSIITPKAQTTRHRILGIVNEEEYQIVFSDTPGI---- 63

Query: 282 DIVEKEGIKRTFL-----EVENADLILLLKEINSK 311
            I  K G++ + +      + +ADLIL + +IN +
Sbjct: 64  -IKPKYGLQDSMMTSVKGALTDADLILFVTDINEQ 97


>gi|310642491|ref|YP_003947249.1| gtpase with domain [Paenibacillus polymyxa SC2]
 gi|309247441|gb|ADO57008.1| Predicted GTPase with uncharacterized domain [Paenibacillus
           polymyxa SC2]
          Length = 417

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 6/91 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTA 275
           N   IV+LG  NAGKSS+ N L  +  A+V+ I GTT D +   ++L   G +V + DTA
Sbjct: 10  NRPHIVLLGRRNAGKSSILNTLTGQPAAVVSPIGGTTTDPVFKPMELLPAGPIVLV-DTA 68

Query: 276 GIRETDDIVEKEGIKRTFLEVENA-DLILLL 305
           G+ +  +I E    +   LE+ N+ DL LL+
Sbjct: 69  GLDDEGEIGELR--RNKTLEILNSTDLALLV 97


>gi|253576866|ref|ZP_04854191.1| GTPase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843733|gb|EES71756.1| GTPase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 420

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I + G +N GKSS+ NAL  +++A+V+ + GTT D +   ++L   G +V I DTAG+ +
Sbjct: 14  IAVFGRTNVGKSSVVNALTGQEIAVVSPVRGTTTDPVYKAMELLPLGPVVLI-DTAGLDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
             ++ E+   K   L +  ADL LL+
Sbjct: 73  EGELGERRKQKTREL-IHRADLALLV 97


>gi|326384755|ref|ZP_08206432.1| GTP-binding protein Der [Gordonia neofelifaecis NRRL B-59395]
 gi|326196563|gb|EGD53760.1| GTP-binding protein Der [Gordonia neofelifaecis NRRL B-59395]
          Length = 479

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 37/58 (63%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA ++ A+V ++ GTT D +   ++L G   +  DTAG+R
Sbjct: 218 RVALVGKPNVGKSSLLNKLAGEERAVVDNVAGTTVDPVDEMIELGGKPWQFVDTAGLR 275



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKS+L N +  +  A+V D+PG TRD ++   +  G    ++DT G
Sbjct: 46  LAIVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYKAEWTGKQFMVTDTGG 100


>gi|325115126|emb|CBZ50682.1| hypothetical protein NCLIV_011480 [Neospora caninum Liverpool]
          Length = 631

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS L N L     ++V+   GTTRD +   ++ +  + ++ DTAGIR   
Sbjct: 396 VAIVGRPNVGKSQLLNRLLGVSRSLVSPEAGTTRDAVDELVERDSVVYRLVDTAGIRRAR 455

Query: 282 DIVEKEG-----IKRTFLEVENADLILLL 305
            +  ++G     +KR    +   D+ LL+
Sbjct: 456 VVKAQQGTEFVMVKRAERALTRCDVCLLV 484



 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKD----VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +I +LG  N GKSSLFN L  K+     AIV D  GTTRD         G    + DT G
Sbjct: 167 RICLLGRPNVGKSSLFNKLKDKEDLAADAIVRDEDGTTRDRHYAFSVWRGCPFVVVDTGG 226

Query: 277 I 277
           +
Sbjct: 227 L 227


>gi|300744003|ref|ZP_07073023.1| GTP-binding protein [Rothia dentocariosa M567]
 gi|300380364|gb|EFJ76927.1| GTP-binding protein [Rothia dentocariosa M567]
          Length = 593

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 27/176 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L    V    A+   +  T R   T D    G    +SDT G 
Sbjct: 350 VAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVRKAQTPD----GIGYTLSDTVGF 405

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISF---PKNIDFIFI 325
             +      E  + T  EV +AD+IL +          ++ + +E+      + I  I +
Sbjct: 406 VRSLPTQLVEAFRSTLEEVADADVILHVVDASHPDPEGQVRAVREVIADLDARRIPEIIV 465

Query: 326 GTKSD------LYSTYTEEYDHLI-SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             K+D      L      E +H+I S+ TGEG+ EL  KI   +     ++   IP
Sbjct: 466 LNKADAADPFILERMRQREPNHVIVSARTGEGIGELKQKIADTIPRPSLEVKLLIP 521


>gi|296115042|ref|ZP_06833684.1| GTP-binding protein Era [Gluconacetobacter hansenii ATCC 23769]
 gi|295978379|gb|EFG85115.1| GTP-binding protein Era [Gluconacetobacter hansenii ATCC 23769]
          Length = 302

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 24/168 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+ + I+G  NAGKS+L N +A   ++IV+    TTR  VL I +     ++ + DT 
Sbjct: 10  RCGF-VAIVGAPNAGKSTLLNRMAGTKLSIVSPKAQTTRFRVLGILMRNHAQMLLV-DTP 67

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEIS---FPKNIDFIFIGT 327
           GI     ++++  +   +   E+AD+ LL+ +  +      +EI      +N     +  
Sbjct: 68  GIFRPRRMLDRAMVAAAWTGAEDADITLLIIDARAGLTEAVREIVSQLAQRNRRVWLVLN 127

Query: 328 KSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSIL 362
           K+DL                 T E+  +IS+ +G+G+++L++++ + L
Sbjct: 128 KTDLMRRDALLPLTAELSGLLTVEHVFMISARSGQGVDDLMDRMAAEL 175


>gi|253583497|ref|ZP_04860695.1| GTP-binding protein [Fusobacterium varium ATCC 27725]
 gi|251834069|gb|EES62632.1| GTP-binding protein [Fusobacterium varium ATCC 27725]
          Length = 414

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 7/77 (9%)

Query: 210 GKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--G 266
           GK+ E  R N   I I G +NAGKSSL N +  + +++V+D+ GTT D +   ++L   G
Sbjct: 9   GKMTETPRGNRVHIAIFGRTNAGKSSLINRITNQKISLVSDVKGTTTDPVYKAMELLPIG 68

Query: 267 YLVKISDTAGIRETDDI 283
            +V I DTAGI   DD+
Sbjct: 69  PVVFI-DTAGI---DDV 81


>gi|126725455|ref|ZP_01741297.1| GTP-binding protein EngA [Rhodobacterales bacterium HTCC2150]
 gi|126704659|gb|EBA03750.1| GTP-binding protein EngA [Rhodobacterales bacterium HTCC2150]
          Length = 469

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  NAGKS+L N +  ++  +     G TRD +++  D E   V++ DTAG+R+ 
Sbjct: 183 QIAVVGRPNAGKSTLINQILGEERLLTGPEAGITRDAISLAFDWEDTPVRMFDTAGMRKK 242

Query: 281 DDIVEK 286
             + +K
Sbjct: 243 AKVQDK 248



 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ E  D
Sbjct: 2   GKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLGDIKFTVVDTAGLEEATD 53


>gi|86610185|ref|YP_478947.1| GTP-binding domain-containing protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558727|gb|ABD03684.1| GTP-binding domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 484

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 25/148 (16%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN----G 219
           KLT  R+ ++ADL     ED      K        L+NDIS    + KL EI +      
Sbjct: 69  KLT--RNQVQADL-----EDADRLIQK--------LQNDISRRALRAKLQEINQRLNQEE 113

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGI 277
             +V+ G S+AGK+SL NAL  + V       GTT+        LEG+   + ++DT G+
Sbjct: 114 LHLVVFGTSSAGKTSLINALMGRPVGETAPTLGTTQQGSIHTYQLEGWNGPISLTDTPGL 173

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305
                  E E   R     + ADL++L+
Sbjct: 174 LTIGGAGEAEA--RAL--AQKADLLILV 197


>gi|37999700|sp|Q8FTK5|DER_COREF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
          Length = 528

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I+    ++ ++G  N GKSSL N  A ++ ++V ++ GTT D +   + L+  + K  DT
Sbjct: 258 IVEGPRRVALVGKPNVGKSSLLNKFAGEERSVVDNVAGTTVDPVDSIIQLDQKMWKFIDT 317

Query: 275 AGIRE 279
           AG+R+
Sbjct: 318 AGLRK 322



 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 40/84 (47%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD ++   D  G    + DT G     
Sbjct: 92  VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLSDWGGQRFWVQDTGGWDPNV 151

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +      +  L + +AD+I+ +
Sbjct: 152 KGIHASIAHQAELAMASADVIVFV 175


>gi|254168430|ref|ZP_04875275.1| GTPase, putative [Aciduliprofundum boonei T469]
 gi|289595771|ref|YP_003482467.1| small GTP-binding protein [Aciduliprofundum boonei T469]
 gi|197622711|gb|EDY35281.1| GTPase, putative [Aciduliprofundum boonei T469]
 gi|289533558|gb|ADD07905.1| small GTP-binding protein [Aciduliprofundum boonei T469]
          Length = 317

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 28/156 (17%)

Query: 222 IVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           +VI G+ N GKS L + +  AK ++A     P TT+ ++   +++ G  V+I DT G+  
Sbjct: 165 VVIAGYPNVGKSELVSKMSTAKPEIA---SYPFTTKGIVVGHMEIRGRRVQIVDTPGLLD 221

Query: 279 ---ETDDIVEKEGI-KRTFLEVENADLILLL------------KEINSKKEISFPKNIDF 322
              E  + +EKE I    +L    AD+I+ L            +++   KEI    +I  
Sbjct: 222 RPLEKRNRIEKEAILALKYL----ADVIVFLLDPSETCGYSMDEQLKLLKEIKKDFDIPI 277

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           + +  K DL  T ++     IS+ TGEGLE+L+ ++
Sbjct: 278 LEVENKVDLLCTDSQRIK--ISAKTGEGLEKLMGEV 311


>gi|297172694|gb|ADI23661.1| GTPase [uncultured Gemmatimonadales bacterium HF4000_15H13]
          Length = 317

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 26/179 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R GY + ++G  NAGKS+L N L  + ++IVT    TT   +T  L      +   DT G
Sbjct: 18  RAGY-VTLVGRPNAGKSTLLNRLIGEHLSIVTAKAQTTWQRVTGILTTGSDQLIFLDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-------------KEINSKKEISFPKNIDFI 323
           + E  D+ ++  +      +  AD++LL+             + +++ +E   P ++   
Sbjct: 77  LLEVHDLFQRAMLGAALQALSEADVVLLVIDCTRKPSPQETARIVHAVEEAQAPIHVALN 136

Query: 324 FIGTKSDLYSTYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            I    +      E +         H +S+  G G++EL+  ++S L       PF  P
Sbjct: 137 KIDEADEQQIEAWERWLAGHVPGALHQVSAADGSGVDELLEAVRSALPEG----PFLYP 191


>gi|25028117|ref|NP_738171.1| GTP-binding protein EngA [Corynebacterium efficiens YS-314]
 gi|259507174|ref|ZP_05750074.1| ribosome-associated GTPase EngA [Corynebacterium efficiens YS-314]
 gi|23493401|dbj|BAC18371.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259165255|gb|EEW49809.1| ribosome-associated GTPase EngA [Corynebacterium efficiens YS-314]
          Length = 552

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I+    ++ ++G  N GKSSL N  A ++ ++V ++ GTT D +   + L+  + K  DT
Sbjct: 282 IVEGPRRVALVGKPNVGKSSLLNKFAGEERSVVDNVAGTTVDPVDSIIQLDQKMWKFIDT 341

Query: 275 AGIRE 279
           AG+R+
Sbjct: 342 AGLRK 346



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 40/84 (47%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD ++   D  G    + DT G     
Sbjct: 116 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLSDWGGQRFWVQDTGGWDPNV 175

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +      +  L + +AD+I+ +
Sbjct: 176 KGIHASIAHQAELAMASADVIVFV 199


>gi|225848905|ref|YP_002729069.1| GTP-binding protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643797|gb|ACN98847.1| GTP-binding protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 259

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           K+ +LG+ N GKSS+ NAL KK VA  +  PG T     I LD   YL+   DT GI
Sbjct: 109 KVGVLGYPNVGKSSIINALKKKKVATTSPKPGMTVGEKLIKLDENIYLI---DTPGI 162


>gi|187777431|ref|ZP_02993904.1| hypothetical protein CLOSPO_00998 [Clostridium sporogenes ATCC
           15579]
 gi|187774359|gb|EDU38161.1| hypothetical protein CLOSPO_00998 [Clostridium sporogenes ATCC
           15579]
          Length = 397

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 16/125 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I  +G +N+GKSSL NA+  +D++IV+ I GTT D ++  ++L     V  +DTAG
Sbjct: 8   NRIHITFIGKTNSGKSSLMNAIIGQDISIVSSIEGTTTDPVSKAMELIPLGPVLFTDTAG 67

Query: 277 IRETDDI--VEKEGIKRTFLEV---------ENADLILLLKEINSKKEISFPKNIDFIFI 325
           + +  ++  +  E    T L+          E+ D+ L  K IN  K+    +NI +I +
Sbjct: 68  LEDNTELGKIRIEKTLNTLLKTDFAVYVMSAEDIDINLYEKSINRFKQ----QNIPYITV 123

Query: 326 GTKSD 330
             K D
Sbjct: 124 VNKID 128


>gi|284053849|ref|ZP_06384059.1| GTP-binding protein Era [Arthrospira platensis str. Paraca]
          Length = 228

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 29/182 (15%)

Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           GYK   + I+G  N GKS+L N L  + +AI + I  TTR+ L   L  +   +   DT 
Sbjct: 15  GYKSGFVGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTDSAQIIFVDTP 74

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFI 323
           GI +    + K  +K   L + + D+++ + +            ++      FP  +   
Sbjct: 75  GIHKPHHQLGKVLVKNAKLAIASVDVLVFVVDASVMSGGGDRYIVDLLTHTKFPVILGLN 134

Query: 324 FIGTKSDLYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               + D Y    + Y              S+ TG G+E L N    +L N     P+  
Sbjct: 135 KWDLQPDQYEAIDQSYQQFAEAHKWQMVKFSAVTGAGVETLQN----LLINSLDPGPYYY 190

Query: 374 PS 375
           P 
Sbjct: 191 PP 192


>gi|258593725|emb|CBE70066.1| GTP-binding protein (era) [NC10 bacterium 'Dutch sediment']
          Length = 300

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + I+G  N GKS+L N L  + V+IV+  P TTR  +     L G  +   DT G
Sbjct: 7   KSGF-VAIIGRPNVGKSTLMNRLLGQKVSIVSPRPQTTRTKIMGIRSLPGAQLIFLDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           I ++     +  +K     +E ADLIL + E
Sbjct: 66  IDKSGGYFHRLMVKTATNSLEGADLILWIVE 96


>gi|251772615|gb|EES53180.1| GTP-binding protein (Era) [Leptospirillum ferrodiazotrophum]
          Length = 335

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 3/104 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280
           + ++G  NAGKS+L NAL  + V+ V+  P TTR ++  I  +  G  + + DT G  ++
Sbjct: 34  VAVVGLPNAGKSTLVNALVGEKVSAVSATPQTTRTLIRGIRTEERGQAIFL-DTPGFHQS 92

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK-EISFPKNIDFI 323
             ++ ++  +R    +  A ++L + +I SKK +  F + +D I
Sbjct: 93  GPLLNQQMGERLSAALAEAHVVLWVVDITSKKRDRDFARFLDLI 136


>gi|56478977|ref|YP_160566.1| GTP-binding protein [Aromatoleum aromaticum EbN1]
 gi|56315020|emb|CAI09665.1| GTP-binding protein [Aromatoleum aromaticum EbN1]
          Length = 304

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I+I+G  N GKS+L NAL K+ VA V D P  T+   T DL   G  + I+DT G+
Sbjct: 118 RIMIMGIPNVGKSTLMNALLKRRVAKVGDEPAVTKSQQTFDL---GSHMTITDTPGL 171


>gi|170587605|ref|XP_001898566.1| hypothetical protein [Brugia malayi]
 gi|158594041|gb|EDP32632.1| conserved hypothetical protein [Brugia malayi]
          Length = 579

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G+ N GKSS  N+L +K V  V  IPG TR V  ++LD     +++ D+ 
Sbjct: 261 IKTSIRVGVVGYPNVGKSSFINSLKRKRVCDVGAIPGITRQVQEVNLDKH---IRLLDSP 317

Query: 276 GI 277
           G+
Sbjct: 318 GV 319


>gi|159903869|ref|YP_001551213.1| GTP-binding protein Era-like protein [Prochlorococcus marinus str.
           MIT 9211]
 gi|159889045|gb|ABX09259.1| GTP-binding protein ERA-like protein [Prochlorococcus marinus str.
           MIT 9211]
          Length = 314

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +I R+G+ + ++G  N GKS+L N L  + V+I + +  TTR+ L   L  +   +   D
Sbjct: 9   KIFRSGF-VALIGRPNVGKSTLVNELVGQKVSITSPVAQTTRNRLRAILTTQNAQLVFVD 67

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           T GI +   ++ +  ++     +   D ILL+ E
Sbjct: 68  TPGIHKPHHLLGQRLVQSARRSIGEVDTILLIFE 101


>gi|172057814|ref|YP_001814274.1| GTP-binding protein EngA [Exiguobacterium sibiricum 255-15]
 gi|171990335|gb|ACB61257.1| small GTP-binding protein [Exiguobacterium sibiricum 255-15]
          Length = 436

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSS+ N++  ++  IV+ I GTTRD +      +     I DTAG+R+ 
Sbjct: 177 KFALVGRPNVGKSSMTNSILGEERVIVSSIAGTTRDAIDTPFSRDEQEYVIIDTAGMRKR 236

Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305
             +    E+  + R    +E AD++ ++
Sbjct: 237 GKVYESTERFSVMRAQKAIERADVVCVV 264



 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 21/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +    V+IV D PG TRD +    +       + DT GI   D
Sbjct: 6   VAIVGRPNIGKSTIFNRVIGDRVSIVEDKPGVTRDRIYGTGEWLNRHFHLIDTGGIEVGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSD- 330
           + + +    +  L ++ AD+I+ +  +N ++ I+          F  N   +    K D 
Sbjct: 66  EPLLQMMRHQAELAIDEADVIIFM--VNGREGITAADEEVANMLFRSNKPVVVAVNKVDN 123

Query: 331 ------LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNK 365
                 +Y  Y+  +  L  IS   G GL ++++++  +  +K
Sbjct: 124 FEMRDLMYEFYSLGFGDLYPISGTHGLGLGDMLDRVLELAPDK 166


>gi|312865180|ref|ZP_07725408.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus downei
           F0415]
 gi|311099291|gb|EFQ57507.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus downei
           F0415]
          Length = 283

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 7/80 (8%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DV 257
           KN +S  + + +   I + G + +I+G  NAGKS+L N LA K +A+V + PG T+    
Sbjct: 102 KNLMSDKLERLREKGIQKEGLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQW 161

Query: 258 LTIDLDLEGYLVKISDTAGI 277
           L  + DLE     I DT GI
Sbjct: 162 LKSNKDLE-----ILDTPGI 176


>gi|281355288|ref|ZP_06241782.1| GTP-binding proten HflX [Victivallis vadensis ATCC BAA-548]
 gi|281318168|gb|EFB02188.1| GTP-binding proten HflX [Victivallis vadensis ATCC BAA-548]
          Length = 449

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 39/194 (20%)

Query: 223 VILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            I+G++N GKSS+  AL+      KD    T  P T R  +T+D +LE   + ++DT G 
Sbjct: 229 AIVGYTNVGKSSILRALSGAEILVKDQLFATLDPTTRR--ITLDDNLE---LLLTDTVGF 283

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEI-SFPKNIDFI 323
                    E  K T  E   AD +LL+ +++S              KE+ +  KNI  +
Sbjct: 284 VRKLPHSLVEAFKSTLEEAVLADFLLLVLDLSSNQLDAEWETTMSVLKELGAEEKNIQVV 343

Query: 324 F-----IGTKSDLYSTY-------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           F     +  ++DL           T  Y   IS+ TGEG+++L  ++ S+ S +F+ L  
Sbjct: 344 FNKLDLVDRENDLVRLARMNGLFPTAIY---ISTATGEGMDKLRERLASLASERFELLRV 400

Query: 372 SIPSHKRHLYHLSQ 385
           ++P  +  L  L+ 
Sbjct: 401 TLPPARSDLAALAH 414


>gi|116749276|ref|YP_845963.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698340|gb|ABK17528.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB]
          Length = 422

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  N GKSSL NA+ +++VAIV++I GTT D +   ++L     V   DTAGI + 
Sbjct: 12  IGIFGRRNVGKSSLLNAVTRQEVAIVSEIAGTTTDPVEKPMELLPLGPVLFIDTAGIDDE 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
             + E   +++T    +  DL +L+ E
Sbjct: 72  GALGELR-VRKTRQVFDRTDLGVLVAE 97


>gi|315108429|gb|EFT80405.1| GTP-binding protein Era [Propionibacterium acnes HL030PA2]
          Length = 342

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 13/137 (9%)

Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E 
Sbjct: 30  ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 89

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316
             + + DT G+ +   ++ +      F      D+I +    N +          EI+  
Sbjct: 90  SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSEIAEL 149

Query: 317 PKNIDFIFIGTKSDLYS 333
           P+    I + TKSDL S
Sbjct: 150 PRRPTLIALATKSDLVS 166


>gi|283783065|ref|YP_003373819.1| GTP-binding protein HflX [Gardnerella vaginalis 409-05]
 gi|283442222|gb|ADB14688.1| GTP-binding protein HflX [Gardnerella vaginalis 409-05]
          Length = 512

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 20/173 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G++NAGKSS+ N L      +   +  T    +      +G    + DT G     
Sbjct: 295 VAVVGYTNAGKSSIINRLTGSQELVENALFATLDTAVRRSQTQDGRSYTLVDTVGFVRRL 354

Query: 282 DIVEKEGIKRTFLEVENADLIL---------LLKEINSKKE----ISFPKNIDFIFIGTK 328
                E  K T  EV  AD+IL          + +IN+  E    IS  ++I  I    K
Sbjct: 355 PTQLVEAFKSTLEEVGQADVILHVVDGSHPDPISQINAVNEVLANISGVEDIPQIMALNK 414

Query: 329 SDLYSTYTEE-----YDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           SD+ S    E     Y    ++S+F+GE L+ L N+++ +L +   ++  ++P
Sbjct: 415 SDMMSDAARERFSSLYSDAVIVSAFSGENLQILRNRLEELLPSPRVRVDVTLP 467


>gi|241068611|ref|XP_002408485.1| GTP-binding protein EngA, putative [Ixodes scapularis]
 gi|215492473|gb|EEC02114.1| GTP-binding protein EngA, putative [Ixodes scapularis]
          Length = 317

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K+ DTAG+R+ 
Sbjct: 51  QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 110

Query: 281 DDIVE 285
             I E
Sbjct: 111 STITE 115


>gi|254413822|ref|ZP_05027591.1| hypothetical protein MC7420_3938 [Microcoleus chthonoplastes PCC
           7420]
 gi|196179419|gb|EDX74414.1| hypothetical protein MC7420_3938 [Microcoleus chthonoplastes PCC
           7420]
          Length = 206

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKS LFNAL    V  V++ PGTT +V    + +      + DT G+   
Sbjct: 39  QVALVGTPNVGKSVLFNALTGTYVT-VSNYPGTTVEVSRGQMTVGDRPFAVVDTPGMYSL 97

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
             I E+E + R  L  E  DL++
Sbjct: 98  LPITEEEKVSRDLLLSEPVDLVI 120


>gi|110801995|ref|YP_698946.1| ferrous iron transport protein B [Clostridium perfringens SM101]
 gi|110682496|gb|ABG85866.1| ferrous iron transport protein B [Clostridium perfringens SM101]
          Length = 587

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279
           I +LG+ N GK++LFNAL   +   V + PG T D        EG+    KI D  GI  
Sbjct: 4   IALLGNPNVGKTTLFNALTGSNQH-VGNWPGVTVD------KKEGFFNSNKIVDLPGIYA 56

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
            D    +E + + FLE  + DLIL
Sbjct: 57  LDTFSNEEKVSKKFLESGDVDLIL 80


>gi|291524971|emb|CBK90558.1| GTP-binding protein Era [Eubacterium rectale DSM 17629]
 gi|291529105|emb|CBK94691.1| GTP-binding protein Era [Eubacterium rectale M104/1]
          Length = 303

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 37/176 (21%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + +AI ++ P TTR+ + T+  D+E   +   DT GI + 
Sbjct: 10  VTIIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVYTDMEKGQIVFLDTPGIHKA 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIGTK 328
            + + +  +      +   D++L L E            I   K+++ P     I I  K
Sbjct: 70  KNKLGEYMVNVAEKTLNEVDVVLWLVEPTNFIGAGEQHIIEQLKKVNTP----VILIINK 125

Query: 329 SDLY---------STYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371
            D            TY + YD       S+  G+  +++IN I       FK LP+
Sbjct: 126 VDTVEKEKVLEYIDTYRKVYDFAEIIPTSALRGQNTDDVINSI-------FKYLPY 174


>gi|295696076|ref|YP_003589314.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus tusciae DSM
           2912]
 gi|295411678|gb|ADG06170.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus tusciae DSM
           2912]
          Length = 290

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 20/135 (14%)

Query: 216 IRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +RN G +++ILG  N GKSSL N LA +  A   D+PG TR    I    EG+  ++ DT
Sbjct: 116 VRNRGVRVLILGIPNVGKSSLINRLAGRSAAKTGDLPGVTRAQQWIRTS-EGF--ELLDT 172

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334
            GI               + + E+ +  LLL    + KE   P     +F+  +  L  T
Sbjct: 173 PGI--------------LWPKFEDPETGLLLAATGAIKEEILPLEDVAVFLFKRLQL--T 216

Query: 335 YTEEYDHLISSFTGE 349
           Y           TGE
Sbjct: 217 YPRALAGRYGDLTGE 231


>gi|237785456|ref|YP_002906161.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758368|gb|ACR17618.1| cytidylate kinase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 784

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N +  +D A+V D+ GTT D +   ++L+       DTAGIR+
Sbjct: 524 RVALVGKPNVGKSSLLNKMTGEDRAVVDDVAGTTVDPVDSLVELDQKTWTFVDTAGIRK 582



 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK------IVILGHSNAGKSSLFNAL 239
           + +  EV N ++   +D   H  +   G     GY       + ILG  N GKS+L N  
Sbjct: 310 DITDDEVNNLLVTSDSDTDWHSVEEAFGVFDDAGYTSEALCTVAILGRPNVGKSTLVNRF 369

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
             +  A+V D PG TRD ++   +  G    + DT G
Sbjct: 370 IGRREAVVEDFPGVTRDRISYLGEWNGRRFWVQDTGG 406


>gi|313813037|gb|EFS50751.1| GTP-binding protein Era [Propionibacterium acnes HL025PA1]
 gi|327330798|gb|EGE72544.1| GTP-binding protein Era [Propionibacterium acnes HL097PA1]
          Length = 342

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 27/192 (14%)

Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E 
Sbjct: 30  ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 89

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316
             + + DT G+ +   ++ +      F      D+I +    N +          +I+  
Sbjct: 90  SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAEL 149

Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362
           P+    I + TKSDL S     E+   I    GE G+E            E +++++ ++
Sbjct: 150 PRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDVI 209

Query: 363 SNKFKKLPFSIP 374
           ++   + P   P
Sbjct: 210 ASLLPEGPAYYP 221


>gi|257468027|ref|ZP_05632123.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185]
 gi|317062313|ref|ZP_07926798.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687989|gb|EFS24824.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185]
          Length = 404

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 6/68 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I I G +NAGKSSL N +  +++++V+D+ GTT D +   ++L   G +V I DTA
Sbjct: 8   NRVHIAIFGRTNAGKSSLINCITNQNISLVSDVKGTTTDPVYKAMELLPIGPVVFI-DTA 66

Query: 276 GIRETDDI 283
           GI   DDI
Sbjct: 67  GI---DDI 71


>gi|284032597|ref|YP_003382528.1| GTP-binding proten HflX [Kribbella flavida DSM 17836]
 gi|283811890|gb|ADB33729.1| GTP-binding proten HflX [Kribbella flavida DSM 17836]
          Length = 496

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 31/166 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + I G++NAGKSSL NA+    V    A+   +  TTR   T D    G +   +DT G 
Sbjct: 276 VAIAGYTNAGKSSLLNAITGAGVLVENALFATLDPTTRKTTTAD----GRVYTFTDTVGF 331

Query: 277 IRE-TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF---PKNIDFI 323
           +R    DIV  E  + T  EV +ADL+L          L +I + +E+       ++  I
Sbjct: 332 VRHLPHDIV--EAFRSTLEEVADADLLLHVVDGSHPDPLAQIQAVREVLHEIGATDVPEI 389

Query: 324 FIGTKSDLYST-------YTEEYDHLISSFTGEGLEELINKIKSIL 362
            +  K D+          + E    ++S+ TGEG+++L  ++++ L
Sbjct: 390 IVINKGDVADPMALAPILHRETGAIVVSARTGEGIDKLRAQVEAAL 435


>gi|168211453|ref|ZP_02637078.1| ferrous iron transport protein B [Clostridium perfringens B str.
           ATCC 3626]
 gi|170710554|gb|EDT22736.1| ferrous iron transport protein B [Clostridium perfringens B str.
           ATCC 3626]
          Length = 587

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279
           I +LG+ N GK++LFNAL   +   V + PG T D        EG+    KI D  GI  
Sbjct: 4   IALLGNPNVGKTTLFNALTGSNQH-VGNWPGVTVD------KKEGFFNSNKIVDLPGIYA 56

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
            D    +E + + FLE  + DLIL
Sbjct: 57  LDTFSNEEKVSKKFLESGDVDLIL 80


>gi|309789730|ref|ZP_07684310.1| GTP-binding protein Era [Oscillochloris trichoides DG6]
 gi|308228216|gb|EFO81864.1| GTP-binding protein Era [Oscillochloris trichoides DG6]
          Length = 466

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 21/168 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L  + V IV+    TTR  +   L      V   DT G
Sbjct: 173 RSGF-VALVGKPNVGKSTLLNTLLGQKVTIVSPRAQTTRVPVRGILSRPDAQVVFIDTPG 231

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNIDF-----IFIGTK 328
           I +    + K  ++     + NAD+I  + +I+   S+ + S  + +       + +  K
Sbjct: 232 IHQPSHKLGKFMVELAERTLPNADVICFMVDISQPPSQLDRSIAEQVQRARAHKLLLLNK 291

Query: 329 SDLY----STYTEEYDHL--------ISSFTGEGLEELINKIKSILSN 364
            D+     +TY EEY  L        IS+  G+GL  L+++I + L N
Sbjct: 292 VDIPPRRGTTYLEEYRSLGTWDMEMAISAQRGQGLSSLLDEIVARLPN 339


>gi|290981914|ref|XP_002673676.1| GTP-binding protein [Naegleria gruberi]
 gi|284087261|gb|EFC40932.1| GTP-binding protein [Naegleria gruberi]
          Length = 645

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G  I  +GH N GKSS+ NAL  K V   +  PG T+ V T+ L+ +  +++  D  G+
Sbjct: 421 DGCVIGFVGHPNVGKSSIINALTGKKVVSTSYTPGHTKHVQTLYLETKNKMIQFCDCPGL 480


>gi|269956364|ref|YP_003326153.1| cytidylate kinase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305045|gb|ACZ30595.1| cytidylate kinase [Xylanimonas cellulosilytica DSM 15894]
          Length = 725

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 213 GEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           GE+   G  ++ ++G  N GKSSL N +A  +  +V +I GTTRD +   + L+G     
Sbjct: 457 GELRPTGPRRVALVGRPNVGKSSLLNKVAGSERVVVDEIAGTTRDPVDELILLKGVPYWF 516

Query: 272 SDTAGIR 278
            DTAGIR
Sbjct: 517 VDTAGIR 523



 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKS+L N +  +  A+V D PG TRD +T   +  G    + DT G
Sbjct: 293 LAIIGRPNVGKSTLVNRVIGRREAVVEDKPGVTRDRVTYPAEWAGREFHVVDTGG 347


>gi|110798573|ref|YP_696346.1| ferrous iron transport protein B [Clostridium perfringens ATCC
           13124]
 gi|110673220|gb|ABG82207.1| ferrous iron transport protein B [Clostridium perfringens ATCC
           13124]
          Length = 587

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279
           I +LG+ N GK++LFNAL   +   V + PG T D        EG+    KI D  GI  
Sbjct: 4   IALLGNPNVGKTTLFNALTGSNQH-VGNWPGVTVD------KKEGFFNSNKIVDLPGIYA 56

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
            D    +E + + FLE  + DLIL
Sbjct: 57  LDTFSNEEKVSKKFLESGDVDLIL 80


>gi|300934024|ref|ZP_07149280.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium
           resistens DSM 45100]
          Length = 811

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           + +VL+ +L      S    Q +   I+    ++ ++G  N GKSSL N +  ++ ++V 
Sbjct: 525 AADVLDQVL------SDFPDQPRETSIVSGPRRVALVGRPNVGKSSLLNKVTGEERSVVD 578

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ GTT D +   ++L+ +  +  DTAGIR+
Sbjct: 579 NVAGTTVDPVDSIVELDEHTWRFVDTAGIRK 609



 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 13/138 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 379 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWTGRRFWVQDTGGWDPDA 438

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
             +     ++    ++ AD+I+ + +    I +  E+   K    +I  I +  K D  S
Sbjct: 439 KGIHAAIARQAETAMDTADVIVFVVDTKVGITATDEVIARKLQRSSIPVILVANKFDSDS 498

Query: 334 TYTEEYDHLISSFTGEGL 351
            Y +     ++ F G GL
Sbjct: 499 QYAD-----MAEFWGLGL 511


>gi|218246630|ref|YP_002372001.1| small GTP-binding protein [Cyanothece sp. PCC 8801]
 gi|257059673|ref|YP_003137561.1| small GTP-binding protein [Cyanothece sp. PCC 8802]
 gi|218167108|gb|ACK65845.1| small GTP-binding protein [Cyanothece sp. PCC 8801]
 gi|256589839|gb|ACV00726.1| small GTP-binding protein [Cyanothece sp. PCC 8802]
          Length = 214

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS LFN L       V++ PGTT ++      + G  V I DT G+    
Sbjct: 48  IALVGSPNVGKSLLFNLLTG-GYTTVSNYPGTTVEIAKSQGIIGGQKVTIIDTPGMYSLM 106

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            + E+E   R FL  E  DL++
Sbjct: 107 SMTEEEQFTRDFLLTEPIDLVI 128


>gi|168216946|ref|ZP_02642571.1| ferrous iron transport protein B [Clostridium perfringens NCTC
           8239]
 gi|182380933|gb|EDT78412.1| ferrous iron transport protein B [Clostridium perfringens NCTC
           8239]
          Length = 587

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279
           I +LG+ N GK++LFNAL   +   V + PG T D        EG+    KI D  GI  
Sbjct: 4   IALLGNPNVGKTTLFNALTGSNQH-VGNWPGVTVD------KKEGFFNSNKIVDLPGIYA 56

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
            D    +E + + FLE  + DLIL
Sbjct: 57  LDTFSNEEKVSKKFLESGDVDLIL 80


>gi|15672203|ref|NP_266377.1| GTP-binding protein YqeH [Lactococcus lactis subsp. lactis Il1403]
 gi|12723078|gb|AAK04319.1|AE006260_2 GTP-binding protein [Lactococcus lactis subsp. lactis Il1403]
          Length = 381

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 15/103 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ K     +DV   +  PGTT D + I LD +  L
Sbjct: 175 EYYRRGRDVYVVGVTNVGKSTLINAIIKSASGSEDVITTSRFPGTTLDKIEIPLDEDSAL 234

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           +   DT GI     I         +LE E+   +   KEI  K
Sbjct: 235 I---DTPGIIHRGQIAH-------YLEPEDLKYVSPRKEIKPK 267


>gi|221194745|ref|ZP_03567802.1| GTP-binding protein HflX [Atopobium rimae ATCC 49626]
 gi|221185649|gb|EEE18039.1| GTP-binding protein HflX [Atopobium rimae ATCC 49626]
          Length = 429

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 84/205 (40%), Gaps = 37/205 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + + + G++NAGKS+L N L    V     +   +  TTR   TI L+ EG  + ++DT 
Sbjct: 210 FSVSLAGYTNAGKSTLLNQLTNASVYAKDELFATLDPTTR---TITLE-EGRKITLTDTV 265

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL---------KEIN-------------SKKE 313
           G  +       E  K T  E + ADLILL+         KEI               KK 
Sbjct: 266 GFIQKLPTTLIESFKSTLAEAQAADLILLVVDASDKNFDKEIEVVTSILNDIKVSAHKKL 325

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           + F K ID +     + + + Y +     IS+    GL  L+  I  I     K L   I
Sbjct: 326 LVFNK-IDLLDTNNLAKMRTLYPDAV--FISAQKAMGLRGLLYTIAHIAGEDDKTLHVCI 382

Query: 374 PSHKRHLYHL----SQTVRYLEMAS 394
           P  +  L H+     Q +R    AS
Sbjct: 383 PFDQGFLIHMVHERCQIIRTCYQAS 407


>gi|319405459|emb|CBI79078.1| GTP-binding protein Era [Bartonella sp. AR 15-3]
          Length = 300

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 22/168 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++   +  +   + + DT G
Sbjct: 8   RSGF-VALIGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIYDKTQIILIDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS--KKEISFPKNI------DFIFIGTK 328
           +      +E+  +   +   +NAD++L+L ++ S    E+S   +I      D I +  K
Sbjct: 67  VFRPHKRLERAMVSAAWGGAKNADILLVLIDVQSGLSDEVSAMLDILKSVEQDKILVLNK 126

Query: 329 SD---------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILS 363
            D         L +   E+ + L    IS+  G G ++L++ + +I+ 
Sbjct: 127 IDTVVKSSLLALTAQVNEQVNFLQTFMISALNGSGCKDLLHYLSTIMQ 174


>gi|220909819|ref|YP_002485130.1| small GTP-binding protein [Cyanothece sp. PCC 7425]
 gi|219866430|gb|ACL46769.1| small GTP-binding protein [Cyanothece sp. PCC 7425]
          Length = 520

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 6/123 (4%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGI 277
           ++IV+ G  +AGK+SL NAL  + V  V+   GTT    T  L LEG  + + I+DT GI
Sbjct: 129 FRIVVFGTGSAGKTSLVNALMGRMVGEVSAPMGTTAVGETYCLPLEGFDWDIYITDTPGI 188

Query: 278 RETDDI-VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
            E      E+E + R       ADL+L + + N  ++  +   +  + +G +S L     
Sbjct: 189 LEAGIAGTEREQMARQL--ATEADLLLFVLD-NDLRQSEYQPLLSLVRMGKRSLLILNKI 245

Query: 337 EEY 339
           + Y
Sbjct: 246 DRY 248


>gi|165973368|ref|NP_001107148.1| RAS-like, estrogen-regulated, growth inhibitor [Xenopus (Silurana)
           tropicalis]
 gi|161612291|gb|AAI55995.1| rerg protein [Xenopus (Silurana) tropicalis]
          Length = 199

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 68/158 (43%), Gaps = 39/158 (24%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           KI ILG +  GKS+L      K      D  +  T R   TID DL    +++ DTAG  
Sbjct: 8   KIAILGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDDL--VTMELLDTAG-- 63

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFI 325
             +D +++EG       V  AD   ++ +I  K              EI  PKN+ FI +
Sbjct: 64  -QEDTIQREG------HVRWADGFAIVYDITDKGSFDEVLPFKNLLDEIKKPKNVTFILV 116

Query: 326 GTKSDL---YSTYTEEYDHL----------ISSFTGEG 350
           G K+DL       TEE + L           S+ TGEG
Sbjct: 117 GNKADLDHCRQVSTEEGEKLATELACAFYECSACTGEG 154


>gi|163851698|ref|YP_001639741.1| GTP-binding protein Era [Methylobacterium extorquens PA1]
 gi|163663303|gb|ABY30670.1| GTP-binding protein Era [Methylobacterium extorquens PA1]
          Length = 326

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 32/191 (16%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG- 266
           +QG+  E  R G+ + ++G  NAGKS+L NAL    V+IV+    TTR  L   + +EG 
Sbjct: 23  AQGQPREETRAGF-VALIGVPNAGKSTLLNALVGAKVSIVSRKVQTTR-ALVRGIVMEGN 80

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------- 312
             + + DT GI      +++  +   +    +AD + LL  I+++K              
Sbjct: 81  AQIVLVDTPGIFAPKRRLDRAMVHSAWSGAADADAVCLL--IDARKGADEEVETILRRLP 138

Query: 313 EISFPK-----NIDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           E+  PK      ID I     +   + L +    E   LIS+  G+G+ +L    +  L+
Sbjct: 139 EVKRPKILILNKIDLIARERLLELVAKLNAMVPFEDTFLISALKGDGIADL----RKALA 194

Query: 364 NKFKKLPFSIP 374
            +    P+  P
Sbjct: 195 ARMPPSPWLYP 205


>gi|326333977|ref|ZP_08200207.1| GTP-binding protein Era [Nocardioidaceae bacterium Broad-1]
 gi|325948256|gb|EGD40366.1| GTP-binding protein Era [Nocardioidaceae bacterium Broad-1]
          Length = 315

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 30/147 (20%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275
           R+G+ +  +G  NAGKS+L NAL    VAI +D P TTR V+  I    +G L+ + DT 
Sbjct: 14  RSGF-VSFVGRPNAGKSTLTNALVGTKVAITSDKPQTTRTVVKGIVHRPDGQLI-LVDTP 71

Query: 276 GIRET--------DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEIS-----FP 317
           GI           +D+VE      T+ EV   D++ +    N K     + I+       
Sbjct: 72  GIHRPRTLLGERLNDLVEA-----TWTEV---DVVAICFPCNEKIGPGDRRIAENANKLK 123

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLIS 344
           K I  + + TK+DL +T  +  +HL+S
Sbjct: 124 KGIKRVAVATKTDL-ATPEQIGEHLMS 149


>gi|317494160|ref|ZP_07952576.1| hypothetical protein HMPREF0864_03345 [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917933|gb|EFV39276.1| hypothetical protein HMPREF0864_03345 [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 295

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  +I   IS+ ++ E+I     I I+G + AGKSSL NA+ K D+  V+D+   TR+  
Sbjct: 19  LPENIRESISR-RINEVINYEPVIGIMGKTGAGKSSLCNAIFKGDICAVSDVEACTRETQ 77

Query: 259 TIDLDLEGYLVKISDTAGIRET 280
            + +      +++ D  G+ E+
Sbjct: 78  EVRIQFGKRAIRLIDIPGVGES 99


>gi|168207503|ref|ZP_02633508.1| ferrous iron transport protein B [Clostridium perfringens E str.
           JGS1987]
 gi|170661126|gb|EDT13809.1| ferrous iron transport protein B [Clostridium perfringens E str.
           JGS1987]
          Length = 587

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279
           I +LG+ N GK++LFNAL   +   V + PG T D        EG+    KI D  GI  
Sbjct: 4   IALLGNPNVGKTTLFNALTGSNQH-VGNWPGVTVD------KKEGFFNSNKIVDLPGIYA 56

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
            D    +E + + FLE  + DLIL
Sbjct: 57  LDTFSNEEKVSKKFLESGDVDLIL 80


>gi|153953550|ref|YP_001394315.1| GTP-binding protein Era [Clostridium kluyveri DSM 555]
 gi|219854172|ref|YP_002471294.1| hypothetical protein CKR_0829 [Clostridium kluyveri NBRC 12016]
 gi|189037262|sp|A5N6N6|ERA_CLOK5 RecName: Full=GTPase Era
 gi|254783294|sp|B9E055|ERA_CLOK1 RecName: Full=GTPase Era
 gi|146346431|gb|EDK32967.1| Predicted GTP-binding protein [Clostridium kluyveri DSM 555]
 gi|219567896|dbj|BAH05880.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 293

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +I++G+ I I+G  N GKS+L N++  + ++IV+  P TTR+ +   L  + + +   DT
Sbjct: 1   MIKSGF-ITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNSIQTILTRDDFQLIFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    +    +K     V++ DLIL L
Sbjct: 60  PGIHKPKHKLGNYMVKVAESSVKDVDLILFL 90


>gi|313680895|ref|YP_004058634.1| ferrous iron transport protein b [Oceanithermus profundus DSM
           14977]
 gi|313153610|gb|ADR37461.1| ferrous iron transport protein B [Oceanithermus profundus DSM
           14977]
          Length = 706

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G ++V +G+ N GK++L NALA  ++  V + PGTT D L   L L G  V++ D  G 
Sbjct: 17  DGTRVVTVGNPNTGKTTLINALAGSNLK-VGNWPGTTVDRLEARLRLPGGTVRLVDLPGA 75

Query: 278 RETDDIVEKEGIK 290
              +    +E + 
Sbjct: 76  YSLNPTTPEEALA 88


>gi|302382897|ref|YP_003818720.1| GTP-binding proten HflX [Brevundimonas subvibrioides ATCC 15264]
 gi|302193525|gb|ADL01097.1| GTP-binding proten HflX [Brevundimonas subvibrioides ATCC 15264]
          Length = 443

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 32/172 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN L   +V +  D+   T D     + L +G    I+DT G    
Sbjct: 220 VALVGYTNAGKSTLFNRLTGSEV-LAKDLLFATLDTTQRTIRLPQGRPAIIADTVGF--I 276

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------------- 324
            D+  +  E  + T  EV  ADLIL +++I S    +  K+++ +               
Sbjct: 277 SDLPHELVESFRATLEEVGEADLILHVRDIASADTAAQAKDVEDVLKQIEQPEGKPRRIL 336

Query: 325 -IGTKSDLYSTYTEEYDH-----------LISSFTGEGLEELINKIKSILSN 364
            +  K+DL      E               +S++TG+G+E L   I  ++ +
Sbjct: 337 EVWNKTDLLDPEAREAVEGQAARSGNTAVAVSAWTGQGIETLRQAITDLIDD 388


>gi|89076512|ref|ZP_01162826.1| putative GTPase [Photobacterium sp. SKA34]
 gi|89047830|gb|EAR53426.1| putative GTPase [Photobacterium sp. SKA34]
          Length = 317

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 9/85 (10%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +N I+ L   ++ H  +   G+ IR     +I+G  N GKS++ NALA + VAI  + P 
Sbjct: 99  VNQIMDLCRKLAPHREEA--GKKIRT----MIMGIPNVGKSTIINALAGRTVAITGNQPA 152

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGI 277
            TR    I+LD  G L  +SDT GI
Sbjct: 153 VTRQQQRINLD-NGVL--LSDTPGI 174


>gi|55821597|ref|YP_140039.1| GTP-binding protein YqeH [Streptococcus thermophilus LMG 18311]
 gi|55737582|gb|AAV61224.1| conserved hypothetical protein [Streptococcus thermophilus LMG
           18311]
          Length = 372

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R G  + ++G +N GKS+L NA+ K     KDV   +  PGTT D + I LD   Y 
Sbjct: 158 EALRKGRDVYVVGVTNVGKSTLINAIIKEITGDKDVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGI 277
             I DT GI
Sbjct: 217 --IFDTPGI 223


>gi|317496984|ref|ZP_07955314.1| small GTP-binding domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316895996|gb|EFV18148.1| small GTP-binding domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 402

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I + G  NAGKSS+ NA+  +++AIV+D+ GTT D +   ++L   G +V I DT G+ +
Sbjct: 14  IALFGKRNAGKSSVINAMTNQELAIVSDVKGTTTDPVYKAMELLPLGPVVMI-DTPGLDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
             ++ EK  +K+    +  AD+ L++
Sbjct: 73  EGELGEKR-VKKAKEVLGKADIALVI 97


>gi|55823525|ref|YP_141966.1| GTP-binding protein YqeH [Streptococcus thermophilus CNRZ1066]
 gi|116628312|ref|YP_820931.1| GTP-binding protein YqeH [Streptococcus thermophilus LMD-9]
 gi|55739510|gb|AAV63151.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
 gi|116101589|gb|ABJ66735.1| Predicted GTPase [Streptococcus thermophilus LMD-9]
 gi|312278936|gb|ADQ63593.1| Ribosome biogenesis GTPase YqeH [Streptococcus thermophilus ND03]
          Length = 372

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R G  + ++G +N GKS+L NA+ K     KDV   +  PGTT D + I LD   Y 
Sbjct: 158 EALRKGRDVYVVGVTNVGKSTLINAIIKEITGDKDVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGI 277
             I DT GI
Sbjct: 217 --IFDTPGI 223


>gi|227874499|ref|ZP_03992671.1| GTP-binding protein Era [Oribacterium sinus F0268]
 gi|227839643|gb|EEJ50101.1| GTP-binding protein Era [Oribacterium sinus F0268]
          Length = 319

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 46/187 (24%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G  NAGKS+L NAL  + VAI +  P TTR+ +    D E   +   DT 
Sbjct: 24  VKSGF-VSIVGLPNAGKSTLLNALIGQKVAITSKKPQTTRNQIMAVYDEERGQIVFHDTP 82

Query: 276 GIRETDDI--VEKEGIKRTFLEVENADLIL------------------LLKEINSKKEIS 315
           GI +  +   V  E +    L   N DL+L                  LLK  +SK++I 
Sbjct: 83  GIHKAKNQLSVYMESVAEKAL--GNGDLVLYIVDATEQKGEKEEQILSLLK--HSKRKII 138

Query: 316 FPKN-IDFI-----FIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNK 365
              N +D +     F+  K D    Y +E D      IS++  +GLEEL    K IL   
Sbjct: 139 LVLNKLDLLGGEDAFLKKKED----YEKELDFAAIVGISAYKSQGLEEL----KDIL--- 187

Query: 366 FKKLPFS 372
           F  LP+ 
Sbjct: 188 FDLLPYG 194


>gi|188996268|ref|YP_001930519.1| small GTP-binding protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931335|gb|ACD65965.1| small GTP-binding protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 197

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 34/131 (25%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR---------DVLTIDLDLEGYLVKIS 272
           I I+G SN GKSSL NA+ K+ +A V+  PG T+         D+  +DL   G+     
Sbjct: 27  IAIVGRSNVGKSSLINAIFKRSIAKVSATPGKTKLINFFLLNDDIYFVDLPGYGF----- 81

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID----------- 321
             A +   +    K  I+   L  EN +LI++L +         P N+D           
Sbjct: 82  --AAVSHKEKQNWKRMIEDYLLNRENLNLIIMLVDTRYP-----PTNLDILMKEWLESFE 134

Query: 322 --FIFIGTKSD 330
             +I +GTK D
Sbjct: 135 KPYIVVGTKID 145


>gi|21226612|ref|NP_632534.1| GTP-binding protein [Methanosarcina mazei Go1]
 gi|20904890|gb|AAM30206.1| GTP-binding protein [Methanosarcina mazei Go1]
          Length = 355

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G+ +V L G++NAGKS+LFNA+  + V     + T +  TTR      LDL G    +
Sbjct: 123 RKGFSLVALAGYTNAGKSTLFNAIVNESVEARNMLFTTLVPTTR-----ALDLGGRKALL 177

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
           +DT G  E       +  K T  E+  +DLILL+ +   K E    K
Sbjct: 178 TDTVGFIEELPHWLVDAFKSTLDEIFLSDLILLVVDAGEKPETILQK 224


>gi|297794363|ref|XP_002865066.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297310901|gb|EFH41325.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 427

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 108/246 (43%), Gaps = 50/246 (20%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + +LG  N GKS+L N +  + ++IVTD P TTR  +        Y + + DT G
Sbjct: 128 RSGY-VAVLGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTPG 186

Query: 277 IRETD----DIVEKEGIKRTFLEVENADLILLL----------KEINSKKEISFPKNIDF 322
           + E      D +  + ++   +   NAD +++L          +E+  +   +  K    
Sbjct: 187 VIEKKMHRLDTMMMKNVRDAAI---NADCVVILVDACKTPTYIEEVLKEGLGNLEKKPPM 243

Query: 323 IFIGTKSDL------------YSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKK 368
           + +  K DL            Y  +T + D +I  S+  G G+E++   I S       K
Sbjct: 244 LLVMNKKDLIKPGEIAKKLEWYEKFT-DVDEVIPVSAKYGHGIEDVKEWILS-------K 295

Query: 369 LPFSIPSHKRHL-------YHLSQTVR---YLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           LPF  P + + +       + +S+ VR   +++  +     C +++++   R A+    +
Sbjct: 296 LPFGPPYYPKDIVSEHPERFFVSEIVREKIFMQYRNEVPYACQVNVLSYKTRPAAKDFIQ 355

Query: 419 ITGCVD 424
           +   VD
Sbjct: 356 VEVVVD 361


>gi|156937792|ref|YP_001435588.1| small GTP-binding protein [Ignicoccus hospitalis KIN4/I]
 gi|156566776|gb|ABU82181.1| small GTP-binding protein [Ignicoccus hospitalis KIN4/I]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y I ++G  N GKS+  N L  K V+ V + PG T D+  I ++ +G  V I D  G+  
Sbjct: 3   YSIAVVGQPNVGKSTFINVLIGKYVSEVANWPGVTVDIKIIKIEYDGKEVCIYDFPGMYS 62

Query: 280 TDDIVEKEGIKRTFLEVENAD 300
            +   E+E I       E+ D
Sbjct: 63  LNPTSEEERIAAERFVTEDFD 83


>gi|126699770|ref|YP_001088667.1| putative ATP/GTP-binding protein [Clostridium difficile 630]
 gi|255101290|ref|ZP_05330267.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-63q42]
 gi|255307166|ref|ZP_05351337.1| putative ATP/GTP-binding protein [Clostridium difficile ATCC 43255]
 gi|115251207|emb|CAJ69038.1| putative ATP/GTP-binding protein [Clostridium difficile]
          Length = 402

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 25/169 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279
           I + G  NAGKSS+ NA+  +  AIV+DI GTT D +   +++   G  V I DTAG+ +
Sbjct: 14  IGLFGKRNAGKSSIINAITNQSAAIVSDIAGTTTDPVFRPMEILPIGPCVLI-DTAGLDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSDL 331
             ++ E   I ++   +E  D+ LL+ +     S++++S       KNI  I I  K D 
Sbjct: 73  VGELGELR-IGKSLDVLEKTDIALLVVDCQIGISQEDLSLIEKFNDKNIPHILILNKIDT 131

Query: 332 YSTYTEEYDHL----------ISSFTGEGLEELINKIKSIL---SNKFK 367
               +E  +            +SS    G+E L N+I  +L   S +FK
Sbjct: 132 IKNQSEILNLTKNKVKCPVVSVSSTDKIGIENLKNEIIKVLPKDSTEFK 180


>gi|332653030|ref|ZP_08418775.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcaceae
           bacterium D16]
 gi|332518176|gb|EGJ47779.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcaceae
           bacterium D16]
          Length = 292

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 19/122 (15%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
           +G+W  K    R     + D    + V  FS+  V+ ++L  K+ I+    +G +G  +R
Sbjct: 71  WGEWFRK----RGCSVLETDAKTGKGVGQFSA--VVQNVL--KDQIARWQERGLVGRPVR 122

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTA 275
                +I+G  N GKS+  N +AK+  A   D PG TR    +T+D  LE     + DT 
Sbjct: 123 ----AMIVGVPNVGKSTFINKVAKRKTAKAGDRPGVTRGKQWVTVDRGLE-----LLDTP 173

Query: 276 GI 277
           GI
Sbjct: 174 GI 175


>gi|325662531|ref|ZP_08151134.1| hypothetical protein HMPREF0490_01874 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471227|gb|EGC74452.1| hypothetical protein HMPREF0490_01874 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 405

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I I G  NAGKSSL NAL  +++AIV+DI GTT D +   ++L   G +V I DT G+ +
Sbjct: 14  IGIFGKRNAGKSSLINALTGQNLAIVSDIKGTTTDPVLKSMELLPLGPVVLI-DTPGLDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
              + +   +++T+  +   D+ +L+
Sbjct: 73  HGPLGDLR-VQKTYQMLNKTDIAILV 97


>gi|300770940|ref|ZP_07080817.1| GTP-binding protein Era [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762213|gb|EFK59032.1| GTP-binding protein Era [Sphingobacterium spiritivorum ATCC 33861]
          Length = 292

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 52/90 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L NAL  + ++I+T    TTR  +   ++ E + +  SDT G+ + +
Sbjct: 8   VSIIGKPNAGKSTLMNALVGEKMSIITPKAQTTRHRIMGIVNDENHQIVFSDTPGVIKPN 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
             +++  +      + +AD+IL + +IN K
Sbjct: 68  YSLQESMMNFVQGSLIDADIILFVTDINEK 97


>gi|73667167|ref|YP_303183.1| GTP-binding protein Era [Ehrlichia canis str. Jake]
 gi|123614857|sp|Q3YRS0|ERA_EHRCJ RecName: Full=GTPase Era
 gi|72394308|gb|AAZ68585.1| Small GTP-binding protein domain:GTP-binding protein Era [Ehrlichia
           canis str. Jake]
          Length = 296

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 21/154 (13%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G +NAGKS+L N L  + VA VT    TTR  +   L+ E   +   DT GI      
Sbjct: 13  IVGTTNAGKSTLINMLVGRKVAAVTPKVQTTRVRMHAVLNNENVQLIFIDTPGIFSPKTK 72

Query: 284 VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSD----- 330
           +EK  +K  ++ ++  + ++LL ++ +      +K IS  K  NI+ I +  K D     
Sbjct: 73  LEKFIVKHAWMSLKGIENVILLLDVKNYLNKHIEKIISRIKQSNINAILVVNKIDMVSQA 132

Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELIN 356
                   +YS +       IS+    GL  LIN
Sbjct: 133 LVDKAIEYMYSLHNFSKTFTISALHDIGLNRLIN 166


>gi|302335736|ref|YP_003800943.1| GTP-binding protein HflX [Olsenella uli DSM 7084]
 gi|301319576|gb|ADK68063.1| GTP-binding protein HflX [Olsenella uli DSM 7084]
          Length = 432

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
           +++ + G++NAGKS+L N L     A V D    T D  T  + L+ G  V ++DT G  
Sbjct: 210 FRVALAGYTNAGKSTLLNRLTGAG-AYVKDELFATLDPTTRSMVLDAGRKVTVTDTVGFI 268

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPKNI 320
           +       E  K T  EV  ADL+LL+ +    N +KEI+  + I
Sbjct: 269 QKLPTTLVESFKSTLAEVMAADLVLLVADASDGNVRKEIAAVRRI 313


>gi|169629458|ref|YP_001703107.1| GTP-binding protein EngA [Mycobacterium abscessus ATCC 19977]
 gi|169241425|emb|CAM62453.1| Probable GTP-binding protein EngA [Mycobacterium abscessus]
          Length = 466

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N L+    A+V D  GTT D +   ++L G   +  DTAG+R
Sbjct: 205 RVALVGKPNVGKSSLLNRLSGDQRAVVHDTAGTTVDPVDTLIELGGKTWRFVDTAGLR 262



 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  N GKS+L N +  +  A+V DIPG TRD ++   +       + DT G       ++
Sbjct: 37  GRPNVGKSTLVNRIIGRREAVVQDIPGVTRDRVSYPAEWLDRRFTVQDTGGWEADATGLQ 96

Query: 286 KEGIKRTFLEVENADLILLL 305
           +   ++    +  ADLI+L+
Sbjct: 97  QLVAEQARHAMATADLIILV 116


>gi|15643211|ref|NP_228255.1| hypothetical protein TM0445 [Thermotoga maritima MSB8]
 gi|4980952|gb|AAD35530.1|AE001722_14 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 404

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 26/171 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           IV+ G  N GKSS  NAL  ++V+IV++  GTT D +   ++L     V + DT G+ + 
Sbjct: 12  IVVAGRRNVGKSSFMNALVGQNVSIVSEYAGTTTDPVYKSMELYPVGPVTLVDTPGLDDV 71

Query: 281 DDI--VEKEGIKRTFLEVENA-------------DLILLLKEINSKKEISFPKNIDFI-F 324
            ++  +  E  +R F   +               D++ L KE+    EI F   ++ I  
Sbjct: 72  GELGRLRVEKARRVFYRADCGILVTDSEPTPYEDDVVNLFKEM----EIPFVVVVNKIDV 127

Query: 325 IGTKSD----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +G K++    LY +  E    L+S+   +G +++   I  IL    +++P+
Sbjct: 128 LGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD-EEIPY 177


>gi|301091319|ref|XP_002895847.1| guanine nucleotide-binding protein [Phytophthora infestans T30-4]
 gi|262096558|gb|EEY54610.1| guanine nucleotide-binding protein [Phytophthora infestans T30-4]
          Length = 631

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            D S   S G +G+       I ++GH N GKSS+ NALA K +  V+  PG T+ + TI
Sbjct: 486 TDPSVPGSAGAIGQANTPKVTIGLIGHPNVGKSSVLNALAGKKIVSVSHTPGHTKRLQTI 545

Query: 261 DLDLEGYLVKISDTAGI 277
            +  E   + I D  G+
Sbjct: 546 MISPE---ICICDCPGL 559


>gi|299139980|ref|ZP_07033150.1| GTP-binding protein Era [Acidobacterium sp. MP5ACTX8]
 gi|298597980|gb|EFI54148.1| GTP-binding protein Era [Acidobacterium sp. MP5ACTX8]
          Length = 384

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 13/108 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL----------- 264
           +R+G+ I I+G  NAGKS+L NAL  + +AIVT  P TTR  +   L+L           
Sbjct: 3   LRSGF-ISIIGRPNAGKSTLLNALLGQKLAIVTHKPQTTRTRIQGVLELPVRKKTKTDGG 61

Query: 265 -EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
                + + DT G+ + +  ++K  ++     +E+ D++  + ++  +
Sbjct: 62  RPASQIVLVDTPGVHKPETQLDKRMMQEVHDALESRDVVWFIVDVTHR 109


>gi|295399932|ref|ZP_06809913.1| GTP-binding proten HflX [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978335|gb|EFG53932.1| GTP-binding proten HflX [Geobacillus thermoglucosidasius C56-YS93]
          Length = 413

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I ++G++NAGKS+LFN L   D +   ++   T D LT  + L  GY V ++DT G  
Sbjct: 197 FQISLVGYTNAGKSTLFNRLTDAD-SFEENLLFATLDPLTRKMTLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  EV+ ADLIL
Sbjct: 256 QDLPTTLVAAFRSTLEEVKEADLIL 280


>gi|197303325|ref|ZP_03168365.1| hypothetical protein RUMLAC_02048 [Ruminococcus lactaris ATCC
           29176]
 gi|197297609|gb|EDY32169.1| hypothetical protein RUMLAC_02048 [Ruminococcus lactaris ATCC
           29176]
          Length = 300

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 30/176 (17%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   +  
Sbjct: 1   MKENFKSGF-VTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKN 319
            DT GI +  + + +  +      +   D++L L E            I   K++  P  
Sbjct: 60  VDTPGIHKAKNKLGEYMVNIAERSLNEVDVVLWLVEPSNFIGAGEKHIIEQLKKVKTP-- 117

Query: 320 IDFIFIGTKSDLYS---------TYTEEYDHL----ISSFTGEGLEELINKIKSIL 362
              I +  K D+           TY +EYD      +S+ TG+  +EL+  I + L
Sbjct: 118 --VILVINKIDMVKREEILAFIDTYRKEYDFAEIVPVSARTGDNTDELVKVILNYL 171


>gi|119898411|ref|YP_933624.1| GTPase [Azoarcus sp. BH72]
 gi|119670824|emb|CAL94737.1| probable GTPase [Azoarcus sp. BH72]
          Length = 291

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++I+G  N GKS++ NAL K+ VA V D P  T+ + T+DL   G  + ++DT G+
Sbjct: 109 RMMIMGIPNVGKSTIMNALLKRKVAAVGDEPAVTKQLQTLDL---GPGMTLTDTPGL 162


>gi|20092422|ref|NP_618497.1| GTP-binding protein [Methanosarcina acetivorans C2A]
 gi|19917678|gb|AAM06977.1| GTP-binding protein [Methanosarcina acetivorans C2A]
          Length = 353

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 217 RNGYKIV-ILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G+ +V   G++NAGKS+LFNA+  + V     + T +  TTR      LDL G    +
Sbjct: 123 RKGFSLVSFAGYTNAGKSTLFNAIVDESVEAQDKLFTTLVPTTR-----ALDLGGRKALL 177

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
           +DT G  E       +  K T  E+  +DLILL+ +++ K E    K
Sbjct: 178 TDTVGFIEELPHWLVDAFKSTLDEIFLSDLILLVVDVSEKPETILQK 224


>gi|314966861|gb|EFT10960.1| GTP-binding protein Era [Propionibacterium acnes HL082PA2]
 gi|315093218|gb|EFT65194.1| GTP-binding protein Era [Propionibacterium acnes HL060PA1]
 gi|327327686|gb|EGE69462.1| GTP-binding protein Era [Propionibacterium acnes HL103PA1]
          Length = 342

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 27/192 (14%)

Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E 
Sbjct: 30  ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 89

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316
             + + DT G+ +   ++ +      F      D+I +    N +          +I+  
Sbjct: 90  SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAEL 149

Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362
           P+    + + TKSDL S     E+   I    GE G+E            E +++++ ++
Sbjct: 150 PRRPTLVALATKSDLVSKARMAEHLATIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDVI 209

Query: 363 SNKFKKLPFSIP 374
           ++   + P   P
Sbjct: 210 ASLLPEGPAYYP 221


>gi|312111545|ref|YP_003989861.1| GTP-binding proten HflX [Geobacillus sp. Y4.1MC1]
 gi|311216646|gb|ADP75250.1| GTP-binding proten HflX [Geobacillus sp. Y4.1MC1]
          Length = 413

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I ++G++NAGKS+LFN L   D +   ++   T D LT  + L  GY V ++DT G  
Sbjct: 197 FQISLVGYTNAGKSTLFNRLTDAD-SFEENLLFATLDPLTRKMTLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  EV+ ADLIL
Sbjct: 256 QDLPTTLVAAFRSTLEEVKEADLIL 280


>gi|282849486|ref|ZP_06258870.1| small GTP-binding protein domain protein [Veillonella parvula ATCC
           17745]
 gi|282580423|gb|EFB85822.1| small GTP-binding protein domain protein [Veillonella parvula ATCC
           17745]
          Length = 456

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I   G  NAGKS+L N L  + V++V+D+ GTT D ++  ++ L    V I+DTAG
Sbjct: 8   NRIHIGFFGRCNAGKSTLINMLTDQPVSLVSDVAGTTTDPVSKSMEILPLGPVVITDTAG 67

Query: 277 IRETDDI 283
           I +T ++
Sbjct: 68  IDDTTEL 74


>gi|110639447|ref|YP_679656.1| GTP-binding protein Era [Cytophaga hutchinsonii ATCC 33406]
 gi|110282128|gb|ABG60314.1| GTP-binding protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 298

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  NAGKS+L N L  + ++I+T    TTR  V+ I  D E  +V  SDT G+ E 
Sbjct: 12  VSIIGRPNAGKSTLMNCLVGERLSIITPKAQTTRHRVMGIINDPEFQIV-YSDTPGVIEP 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN------IDFIFIGTKSDLYST 334
              ++K  ++     +E+AD+IL + ++   ++ +          +  + +  K DL  +
Sbjct: 71  KYELQKSMMRFVDFSLEDADMILWVLDVKDPEDHALVLQRLNNVEVPVLLVLNKIDL--S 128

Query: 335 YTEEYDHLISSFTGE 349
             EE D L+  +  E
Sbjct: 129 TQEEIDALVEKWKAE 143


>gi|261402146|ref|YP_003246370.1| small GTP-binding protein [Methanocaldococcus vulcanius M7]
 gi|261369139|gb|ACX71888.1| small GTP-binding protein [Methanocaldococcus vulcanius M7]
          Length = 183

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 26/104 (25%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-------------------- 259
           +KI I+G  N GKSS+ NAL  K V++V+++ GTT+  +                     
Sbjct: 4   FKIAIVGAENVGKSSIMNALFGKHVSMVSEVAGTTKMPIKKYWGKFKIGRVKEEPEFAKL 63

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           I +DL G   K SD+     T  I+EK     TF E+  AD+IL
Sbjct: 64  IFVDLGGLYAK-SDSQSPIMTPKILEK-----TFKEINEADMIL 101


>gi|87302572|ref|ZP_01085389.1| ferrous iron transport protein B [Synechococcus sp. WH 5701]
 gi|87282916|gb|EAQ74873.1| ferrous iron transport protein B [Synechococcus sp. WH 5701]
          Length = 602

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 21/161 (13%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTA 275
           +  ++ +LG  N GKS+L+N L     A V + PG T ++L  ++  D  G    + D  
Sbjct: 5   SAVQVALLGLPNTGKSTLYNKLTGGH-AHVANWPGLTVELLRGSLPADAAGRPYDLIDLP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISF-----PKNIDFIFIGTKS 329
           GI +     E E + R FL     DL +++L   ++  ++          +  I      
Sbjct: 64  GIHDLRGSSEDEAVVRRFLSATRPDLAVVVLNASHADTQLRLALELQATGLPLILALNMG 123

Query: 330 DLYSTYTEEYDH------------LISSFTGEGLEELINKI 358
           D    Y    DH            +IS+  GEGL+ L+ +I
Sbjct: 124 DEAQRYGVRIDHQRLAADLGLPVLVISARRGEGLDTLLERI 164


>gi|331268843|ref|YP_004395335.1| GTP-binding protein [Clostridium botulinum BKT015925]
 gi|329125393|gb|AEB75338.1| GTP-binding protein [Clostridium botulinum BKT015925]
          Length = 397

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 56/94 (59%), Gaps = 2/94 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   +V  G +N+GKSS+ NA+  +++++V++I GTT D ++  ++L  +  V   DTAG
Sbjct: 8   NRKHVVFYGKTNSGKSSILNAIVGQEISLVSNIKGTTTDPVSKAMELIPFGPVLFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           I +  ++     ++RT   ++  D  + + +IN+
Sbjct: 68  IDDKSELGNLR-VERTLKTLKKTDFAVYVMDINN 100


>gi|117923594|ref|YP_864211.1| GTP-binding protein, HSR1-related [Magnetococcus sp. MC-1]
 gi|117607350|gb|ABK42805.1| GTP-binding protein, HSR1-related protein [Magnetococcus sp. MC-1]
          Length = 432

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 30/229 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG-I 277
           + + ++G++NAGKS+LFN L +  V +  D    T D     +DL +G  + +SDT G I
Sbjct: 202 FTVALVGYTNAGKSTLFNLLTRAGV-LAEDKLFATLDPTMRAVDLPDGGRILLSDTVGFI 260

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT- 336
           R+    +     K T  EV +AD++L + +++  +   + ++++ +    +     T T 
Sbjct: 261 RQLPHQL-VAAFKATLEEVMSADMLLHVVDLSDPEWERYVESVNGVLQELEVQHTRTLTV 319

Query: 337 -EEYDHL-----------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHK 377
             + D L                 +S+ TGEG+E L+++++  +     +    +P S  
Sbjct: 320 YNKIDRLESRGILERELARGDTIGVSAQTGEGVEPLLSELRRAVGRAMLRYEVILPVSDG 379

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
           R L       ++   AS+ E   G D     + LA   LG++ G V+ E
Sbjct: 380 RWL------AKFHAEASVVEVREGEDFTTLIVELAPAVLGRLQGEVERE 422


>gi|294792411|ref|ZP_06757558.1| GTP-binding protein [Veillonella sp. 6_1_27]
 gi|294456310|gb|EFG24673.1| GTP-binding protein [Veillonella sp. 6_1_27]
          Length = 421

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I   G  NAGKS+L N L  + V++V+D+ GTT D ++  ++ L    V I+DTAG
Sbjct: 8   NRIHIGFFGRCNAGKSTLINMLTDQPVSLVSDVAGTTTDPVSKAMEILPLGPVVITDTAG 67

Query: 277 IRETDDI 283
           I +T ++
Sbjct: 68  IDDTTEL 74


>gi|332294983|ref|YP_004436906.1| ribosome-associated GTPase EngA [Thermodesulfobium narugense DSM
           14796]
 gi|332178086|gb|AEE13775.1| ribosome-associated GTPase EngA [Thermodesulfobium narugense DSM
           14796]
          Length = 425

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 27/35 (77%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +V+ G +N GKS+LFN L K+  ++V+ +PGTTRD
Sbjct: 7   VVLAGRANVGKSTLFNRLLKQSYSMVSSVPGTTRD 41



 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           I G  N GKSSL NA+ +++  IV+D  GTTR+V+       G    + D+AGI+ 
Sbjct: 175 IFGAPNVGKSSLANAILEEERFIVSDFAGTTREVVAKSFRRLGKSWLLLDSAGIKR 230


>gi|315122354|ref|YP_004062843.1| GTP-binding protein Era [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495756|gb|ADR52355.1| GTP-binding protein Era [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N      V+IVT    TTR ++   +  +   V   DT GI +  
Sbjct: 23  VALVGATNAGKSTLVNKFVGAKVSIVTHKVQTTRSIVRGIVSEKDVQVVFLDTPGIFKAK 82

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
           D   K  I+ ++  V++AD++ L+ + N
Sbjct: 83  DSYHKMMIRLSWSTVKHADIVFLVIDSN 110


>gi|297584121|ref|YP_003699901.1| GTP-binding proten HflX [Bacillus selenitireducens MLS10]
 gi|297142578|gb|ADH99335.1| GTP-binding proten HflX [Bacillus selenitireducens MLS10]
          Length = 419

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 87/183 (47%), Gaps = 21/183 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
             ++I ++G++NAGKS+L N L++ DV +V D    T D  T  + L +G  V +SDT G
Sbjct: 198 QAFQIALVGYTNAGKSTLLNRLSQADV-MVEDQLFATLDPTTKKIRLPKGMDVLLSDTVG 256

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF------------ 324
             +          + T  EV  AD I+ + + + +  ++  ++++ +             
Sbjct: 257 FIQQLPTTLIAAFRSTLEEVTGADFIVHVVDASHEDAVNHEESVNRLLDDLDAQHIPRLT 316

Query: 325 IGTKSDL-----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           +  K DL     ++  T     L+S+ + + ++  +NK++  + + F     S+ +++  
Sbjct: 317 VYNKRDLIQGDFFALSTPSL--LLSTMSDDDIQRFLNKLEQTIEDAFVPYQVSVQAYEGK 374

Query: 380 LYH 382
           L H
Sbjct: 375 LLH 377


>gi|145594473|ref|YP_001158770.1| small GTP-binding protein [Salinispora tropica CNB-440]
 gi|189037159|sp|A4X692|DER_SALTO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145303810|gb|ABP54392.1| small GTP-binding protein [Salinispora tropica CNB-440]
          Length = 467

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           G  N GKS+L N L  +  A+V D+PG TRD +  D    G    + DT G
Sbjct: 31  GRPNVGKSTLVNRLIGRRQAVVEDVPGVTRDRVPYDAQWNGRQFAVVDTGG 81



 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 7/94 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   ++ ++G  N GKSSL N  + +  A+V  + GTT D +   +++ G   ++ DTAG
Sbjct: 196 RGPRRVALVGRPNVGKSSLLNRFSGEIRAVVDAVAGTTVDPVDSLVEIGGEAWQLVDTAG 255

Query: 277 IRETDDIVEKEGIK-----RTFLEVENADLILLL 305
           +R+   + +  G +     RT   +E A++ ++L
Sbjct: 256 LRKR--VGQASGTEYYASLRTTSAIEAAEVAVVL 287


>gi|148269615|ref|YP_001244075.1| small GTP-binding protein [Thermotoga petrophila RKU-1]
 gi|170288291|ref|YP_001738529.1| small GTP-binding protein [Thermotoga sp. RQ2]
 gi|147735159|gb|ABQ46499.1| small GTP-binding protein [Thermotoga petrophila RKU-1]
 gi|170175794|gb|ACB08846.1| small GTP-binding protein [Thermotoga sp. RQ2]
          Length = 404

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 26/171 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           IV+ G  N GKSS  NAL  ++V+IV++  GTT D +   ++L     V + DT G+ + 
Sbjct: 12  IVVAGRRNVGKSSFMNALVGQNVSIVSEYAGTTTDPVYKSMELYPVGPVTLVDTPGLDDV 71

Query: 281 DDI--VEKEGIKRTFLEVENA-------------DLILLLKEINSKKEISFPKNIDFI-F 324
            ++  +  E  +R F   +               D++ L KE+    EI F   ++ I  
Sbjct: 72  GELGRLRVEKARRVFYRADCGILVTDSEPTPYEDDVVNLFKEM----EIPFVVVVNKIDV 127

Query: 325 IGTKSD----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +G K++    LY +  E    L+S+   +G +++   I  IL    +++P+
Sbjct: 128 LGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD-EEIPY 177


>gi|268680203|ref|YP_003304634.1| ferrous iron transporter B [Sulfurospirillum deleyianum DSM 6946]
 gi|268618234|gb|ACZ12599.1| ferrous iron transport protein B [Sulfurospirillum deleyianum DSM
           6946]
          Length = 698

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I ++G  N GKS L NA+A   +  V +  G T +   +    +G+ +KI D  G   
Sbjct: 4   FVIALVGQPNVGKSMLINAIADARLR-VGNFSGVTVEKAEVRFVAQGHSIKIVDLPGTYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
            +D  + E + + FLE E  DLI+
Sbjct: 63  LNDYTQDERVTKEFLENEPYDLII 86


>gi|262202148|ref|YP_003273356.1| GTP-binding proten HflX [Gordonia bronchialis DSM 43247]
 gi|262085495|gb|ACY21463.1| GTP-binding proten HflX [Gordonia bronchialis DSM 43247]
          Length = 484

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 34/182 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I + G++NAGKSSL NA+    V    A+   +  TTR   T+D   +G  V  +DT G 
Sbjct: 261 ITVAGYTNAGKSSLVNAMTGSGVLVQDALFATLDPTTRRA-TLD---DGRAVVFTDTVGF 316

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFP- 317
                    E  + T  EV +ADL+L                   ++ EI ++++   P 
Sbjct: 317 VRHLPTQLVEAFRSTLEEVVDADLLLHVVDGSDPFPAEQIAAVRRVVNEIVAEEKADAPP 376

Query: 318 -----KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  ID I     ++L      +    +S+ TGEGL EL ++I+  +     +L  +
Sbjct: 377 EMLVINKIDAIDATRLTELRGALGADA-VFVSARTGEGLPELFDRIREFVGRSDVELTIA 435

Query: 373 IP 374
           +P
Sbjct: 436 VP 437


>gi|328955430|ref|YP_004372763.1| GTP-binding protein Era [Coriobacterium glomerans PW2]
 gi|328455754|gb|AEB06948.1| GTP-binding protein Era [Coriobacterium glomerans PW2]
          Length = 324

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 46/83 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L NA+  K +AI +++  TTR  L   ++  G  +   DT G+ +  
Sbjct: 36  VALVGRPNAGKSTLLNAIFGKKIAITSNVVQTTRRRLRAVVNRPGCQIVFVDTPGLHKPQ 95

Query: 282 DIVEKEGIKRTFLEVENADLILL 304
           D + +E  K    E+ + D++ L
Sbjct: 96  DSLGRELNKGALAELVDVDVVAL 118


>gi|189345893|ref|YP_001942422.1| GTP-binding protein Era [Chlorobium limicola DSM 245]
 gi|189340040|gb|ACD89443.1| GTP-binding protein Era [Chlorobium limicola DSM 245]
          Length = 305

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 76/195 (38%), Gaps = 32/195 (16%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           VI G  NAGKS+L N L    ++IVT  P TTR  +T         +   DT GI +   
Sbjct: 12  VIAGQPNAGKSTLLNKLLDYKLSIVTPKPQTTRKKITGIYHDNRRQIIFLDTPGIMQPQQ 71

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF----------------IFIG 326
            + +  +  T   +E AD++  L       E   P ++DF                I + 
Sbjct: 72  KLHESMLAITRRTLEEADVVTALIPYTKGSE---PYDLDFTAELFNAWLKPAGKPVIAVL 128

Query: 327 TKSDLYSTYTEEYDH-------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            KSD+ S   +E                 +S+  G GLE+L+  +   L       P  +
Sbjct: 129 NKSDIVSRAVQEKAESVMTQLFSPAAVISVSALEGTGLEKLVEALTPFLPMDEPLYPEDM 188

Query: 374 PSHKRHLYHLSQTVR 388
            S     + +S+ +R
Sbjct: 189 LSTAPERFFVSEIIR 203


>gi|227537544|ref|ZP_03967593.1| GTP-binding protein Era [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242596|gb|EEI92611.1| GTP-binding protein Era [Sphingobacterium spiritivorum ATCC 33300]
          Length = 292

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 52/90 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L NAL  + ++I+T    TTR  +   ++ E + +  SDT G+ + +
Sbjct: 8   VSIIGKPNAGKSTLMNALVGEKMSIITPKAQTTRHRIIGIVNDENHQIVFSDTPGVIKPN 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
             +++  +      + +AD+IL + +IN K
Sbjct: 68  YSLQESMMNFVQGSLIDADIILFVTDINEK 97


>gi|222055248|ref|YP_002537610.1| GTP-binding protein Era [Geobacter sp. FRC-32]
 gi|259645945|sp|B9M913|ERA_GEOSF RecName: Full=GTPase Era
 gi|221564537|gb|ACM20509.1| GTP-binding protein Era [Geobacter sp. FRC-32]
          Length = 297

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +    + I +D P TTR+ +    +L G  +   DT GI    
Sbjct: 11  VSIIGRPNVGKSTLLNKILGDKIVITSDKPQTTRNRIQGIHNLPGCQIVFIDTPGIHRAK 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
             + K  +      ++  D+IL L E ++K
Sbjct: 71  SRLNKYMVDVALSSIKEVDVILFLVEADTK 100


>gi|254975750|ref|ZP_05272222.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-66c26]
 gi|255093137|ref|ZP_05322615.1| putative ATP/GTP-binding protein [Clostridium difficile CIP 107932]
 gi|255314879|ref|ZP_05356462.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-76w55]
 gi|255517553|ref|ZP_05385229.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-97b34]
 gi|255650664|ref|ZP_05397566.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-37x79]
 gi|260683753|ref|YP_003215038.1| putative ATP/GTP-binding protein [Clostridium difficile CD196]
 gi|260687413|ref|YP_003218547.1| putative ATP/GTP-binding protein [Clostridium difficile R20291]
 gi|306520592|ref|ZP_07406939.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-32g58]
 gi|260209916|emb|CBA63870.1| putative ATP/GTP-binding protein [Clostridium difficile CD196]
 gi|260213430|emb|CBE05089.1| putative ATP/GTP-binding protein [Clostridium difficile R20291]
          Length = 402

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 25/169 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279
           I + G  NAGKSS+ NA+  +  AIV+DI GTT D +   +++   G  V I DTAG+ +
Sbjct: 14  IGLFGKRNAGKSSIINAITNQSAAIVSDIAGTTTDPVFRPMEILPIGPCVLI-DTAGLDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSDL 331
             ++ E   I ++   +E  D+ LL+ +     S++++S       KNI  I I  K D 
Sbjct: 73  VGELGELR-IGKSLDVLEKTDIALLVVDCQIGISQEDLSLIEKFNDKNIPHILILNKIDT 131

Query: 332 YSTYTEEYDHL----------ISSFTGEGLEELINKIKSIL---SNKFK 367
               +E  +            +SS    G+E L N+I  +L   S +FK
Sbjct: 132 IKNQSEILNLTKNKVKCPVVSVSSTDKIGIENLKNEIIKVLPKDSTEFK 180


>gi|148224844|ref|NP_001086258.1| RAS-like, estrogen-regulated, growth inhibitor [Xenopus laevis]
 gi|49256313|gb|AAH74392.1| MGC84355 protein [Xenopus laevis]
          Length = 199

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 68/158 (43%), Gaps = 39/158 (24%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           KI I G +  GKS+L      K      D  +  T R   TID DL    +++ DTAG  
Sbjct: 8   KIAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDDL--VTMELLDTAG-- 63

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFI 325
             +DI+++EG  R       AD   ++ +I  K              EI  PKN+ FI +
Sbjct: 64  -QEDIIQREGHARW------ADGFAIVYDITDKGSFDEVLPFKNLLDEIKKPKNVTFILV 116

Query: 326 GTKSDL---YSTYTEEYDHL----------ISSFTGEG 350
           G K+DL       TEE + L           S+ TGEG
Sbjct: 117 GNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEG 154


>gi|325295030|ref|YP_004281544.1| GTP-binding protein Era-like-protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065478|gb|ADY73485.1| GTP-binding protein Era-like-protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 306

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++GY + ILG  N GKS+L N+     VAIVTD P TTR  +     L+   +   D
Sbjct: 6   EKFKSGY-VAILGRPNVGKSTLLNSFLGTKVAIVTDKPQTTRHRIIGVKHLKDAQIVFLD 64

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           T GI +    + +   +  F  + +AD+IL L +  S
Sbjct: 65  TPGIHKEKFELNRYMNEIAFGVIPDADIILFLIDARS 101


>gi|109947419|ref|YP_664647.1| ferrous iron transport protein B [Helicobacter acinonychis str.
           Sheeba]
 gi|109714640|emb|CAJ99648.1| ferrous iron transport protein B [Helicobacter acinonychis str.
           Sheeba]
          Length = 642

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL NAL+   +  V +  G T D + + L  + + + I D  G    +
Sbjct: 6   IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLVHKEHQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQYDLIL 86


>gi|302874975|ref|YP_003843608.1| GTP-binding proten HflX [Clostridium cellulovorans 743B]
 gi|307690408|ref|ZP_07632854.1| GTP-binding proten HflX [Clostridium cellulovorans 743B]
 gi|302577832|gb|ADL51844.1| GTP-binding proten HflX [Clostridium cellulovorans 743B]
          Length = 599

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 90/197 (45%), Gaps = 49/197 (24%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA---------KKDVAIVTDIPGTTRDVLTIDLDL-EGY 267
           N  KI ++G++NAGKS+L NALA         +KD     D+   T DV T  + L +  
Sbjct: 364 NVPKISLVGYTNAGKSTLRNALAEYALVEQGKQKDKVFEADMLFATLDVTTRAILLRDKR 423

Query: 268 LVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL-------------------LLK 306
           +  ++DT G IR+ + D+V  E  K T  EV  ADL+L                   +LK
Sbjct: 424 VAALTDTVGFIRKLSHDLV--EAFKSTLEEVIFADLLLHVVDSSSDIIFEQIEATHAVLK 481

Query: 307 EINSKKEISFPKNIDFIFIGTKSDLYSTYT-----EEYDHL----ISSFTGEGLEELINK 357
           E+N     +F K I  I +  K D  + +T     E+Y       IS+  G   + L+  
Sbjct: 482 ELN-----AFDKPI--ILVLNKVDKENAHTVAEIKEKYKEFQVIPISAKNGTNFDGLMEM 534

Query: 358 IKSILSNKFKKLPFSIP 374
           I   L N  KK+ F IP
Sbjct: 535 IVEFLPNPMKKVEFLIP 551


>gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b]
 gi|149811066|gb|EDM70903.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b]
          Length = 425

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 26/172 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           + ++G++NAGKS+LFN +   DV +  D+   T D  +  I+L   G  V +SDT G   
Sbjct: 206 VALVGYTNAGKSTLFNRMTGADV-MAKDMLFATLDPTMRRIELPGGGPEVILSDTVGFIS 264

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYS---- 333
                     + T  EV  ADLI+ +++I+  +  +  +++  I   +G +  +      
Sbjct: 265 DLPTELVAAFRATLEEVLAADLIVHVRDISHPESEAQARDVRTILESLGVRDSIPQIEVW 324

Query: 334 ---------------TYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKK 368
                          T    ++H+  +S+ TGEG+ EL+  I S +++  ++
Sbjct: 325 NKIDKLDDETRQAVLTRAARHEHVQALSAVTGEGMSELVGVITSAMTDTTQE 376


>gi|78046337|ref|YP_362512.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78034767|emb|CAJ22412.1| conserved hypothetical protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 221

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            GY++   G SNAGKSS  NAL +++ +A V+  PG T+ ++   +  E YLV +
Sbjct: 38  GGYEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQIQPERYLVDL 92


>gi|312897383|ref|ZP_07756807.1| small GTP-binding protein [Megasphaera micronuciformis F0359]
 gi|310621444|gb|EFQ04980.1| small GTP-binding protein [Megasphaera micronuciformis F0359]
          Length = 402

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 18/171 (10%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVK 270
           GE I  G+     G+ NAGKSSL NA+  +  AIV+D+ GTT D +   ++L   G +V 
Sbjct: 9   GERIHIGF----FGNRNAGKSSLVNAVTGQYTAIVSDVKGTTTDPVYKAMELLPLGPVVL 64

Query: 271 ISDTAGIRETDDI----VE--KEGIKRTFLEVENADLILLLKEINSKKEISFPK--NIDF 322
           I DT G+ +   +    +E  KE +++T + V   D  L L   + K+ I+  K   I +
Sbjct: 65  I-DTPGLDDAGKVGLLRIEKTKEVLRKTDIAVIVTDGTLPLTP-SDKELIALVKERKIPY 122

Query: 323 IFIGTKSDLYSTYTEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +  K+DL +   EE      +S+    G+++L  ++ S++  +  + P 
Sbjct: 123 CIVRNKADLLNCDKEETGREIFVSTVAKTGIDKLKERLISLVGVRDIETPI 173


>gi|15838031|ref|NP_298719.1| ribosome biogenesis GTP-binding protein YsxC [Xylella fastidiosa
           9a5c]
 gi|9106445|gb|AAF84239.1|AE003973_7 GTP-binding protein [Xylella fastidiosa 9a5c]
          Length = 229

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R FIE  +     +  Q    K++ + +   K  +S+H +     +   +G ++   G 
Sbjct: 3   LRPFIETVVMPPNAQPPQTCDPKQMSSPLECAKYLLSAHTTHQLPAD---DGSEVAFAGR 59

Query: 228 SNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           SNAGKSS+ N L +++ +A V+  PG T+ ++   +  + YLV +
Sbjct: 60  SNAGKSSVLNTLTRQNALARVSKTPGRTQQLVYFTVTPQRYLVDL 104


>gi|163782078|ref|ZP_02177077.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882610|gb|EDP76115.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1]
          Length = 304

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 56/94 (59%), Gaps = 6/94 (6%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTI-DLDLEGYLVKISD 273
           ++ GY + I+G  N GKS+L N +  + V+IVT  PGTTR  VL + ++  E  ++ + D
Sbjct: 1   MKVGY-VTIVGKPNVGKSTLLNNILGRKVSIVTPKPGTTRIRVLGVKNISGEAQIIFL-D 58

Query: 274 TAGIRETD--DIVEKEGIKRTFLEVENADLILLL 305
           T GI +    D++ K  ++     +E+AD+IL +
Sbjct: 59  TPGIYQPKGADVLGKSMLQMARQSLEDADVILFM 92


>gi|296269123|ref|YP_003651755.1| GTP-binding proten HflX [Thermobispora bispora DSM 43833]
 gi|296091910|gb|ADG87862.1| GTP-binding proten HflX [Thermobispora bispora DSM 43833]
          Length = 501

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 28/194 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           R+   + I G++NAGKSSL N L    V    A+   +  T R   T D    G +  ++
Sbjct: 274 RDVPAVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTVRRARTPD----GRVFTLA 329

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKK----EISFPKN 319
           DT G          E  + T  EV +ADLIL +          +I + +    EI    +
Sbjct: 330 DTVGFVRHLPHQLVEAFRSTLEEVADADLILHVVDGSHPDPESQIAAVRKVFAEIEGALD 389

Query: 320 IDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           I  I +  K+D+         +  E +  ++S+ TGEG++ L+  I   L    +++   
Sbjct: 390 IPEIIVINKADIADPVVLARLSAKERHSVVVSARTGEGIDRLLEAIARELPEPDREVRVL 449

Query: 373 IPSHKRHLYHLSQT 386
           +P  +  L   + T
Sbjct: 450 VPYERGDLISRAHT 463


>gi|58583504|ref|YP_202520.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|58428098|gb|AAW77135.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 258

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            GY++   G SNAGKSS  NAL +++ +A V+  PG T+ ++   +  E YLV +
Sbjct: 75  GGYEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQIQPERYLVDL 129


>gi|22328152|ref|NP_201448.2| GTP binding / RNA binding [Arabidopsis thaliana]
 gi|17473914|gb|AAL38371.1| GTP-binding protein-like [Arabidopsis thaliana]
 gi|20259794|gb|AAM13244.1| GTP-binding protein-like [Arabidopsis thaliana]
 gi|332010835|gb|AED98218.1| GTP-binding protein Era [Arabidopsis thaliana]
          Length = 427

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 152/362 (41%), Gaps = 67/362 (18%)

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           FS    EN         S   +  S  +     +  G + ELSS    WI +    RSF 
Sbjct: 17  FSTSVVENPNFSPYRIYSRRRVTKSHLQAHNSTTSYGRT-ELSSSKKLWIRQ----RSFS 71

Query: 173 EADLDFSEEEDVQNFSSKEVLNDI----LFLKNDISSHI----SQGKLGEII----RNGY 220
           E +++ ++ ED +     +++++     L +K D +  +       +LG       R+GY
Sbjct: 72  EMEVEQAQLEDDEEQVEIDIVDEASLLSLSMKPDRNMALLDDYEMEELGHTPNTHHRSGY 131

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + ++G  N GKS+L N +  + ++IVTD P TTR  +        Y + + DT G+ E 
Sbjct: 132 -VAVVGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTPGVIEK 190

Query: 281 D----DIVEKEGIKRTFLEVENADLILLL----KEINSKKEI------SFPKNIDFIFIG 326
                D +  + ++   +   NAD +++L    K   + +E+         K    + + 
Sbjct: 191 KMHRLDTMMMKNVRDAAI---NADCVVILVDACKTPTNIEEVLKEGLGDLEKKPPMLLVM 247

Query: 327 TKSDL------------YSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFS 372
            K DL            Y  +T + D +I  S+  G G+E++   I S       KLPF 
Sbjct: 248 NKKDLIKPGEIAKKLEWYEKFT-DVDEVIPVSAKYGHGIEDVKEWILS-------KLPFG 299

Query: 373 IPSHKRHL-------YHLSQTVR---YLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
            P + + +       + +S+ VR   +++  +     C +++++   R A+    ++   
Sbjct: 300 PPYYPKDIVSEHPERFFVSEIVREKIFMQYRNEVPYACQVNVLSYKTRPAAKDFIQVEVV 359

Query: 423 VD 424
           VD
Sbjct: 360 VD 361


>gi|326202439|ref|ZP_08192308.1| small GTP-binding protein [Clostridium papyrosolvens DSM 2782]
 gi|325987557|gb|EGD48384.1| small GTP-binding protein [Clostridium papyrosolvens DSM 2782]
          Length = 396

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 24/166 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NA+  +D+A+V++I GTT D +   ++L     V   DTAG
Sbjct: 10  NRLHIALFGRRNSGKSSLINAITGQDIALVSEIAGTTTDPVYKAMELHPIGPVMFIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
             +   + E   I++T   +E  D+ ++                   F GT+  L   +T
Sbjct: 70  FDDVGTLGELR-IEKTRKAIEKTDVAIVF------------------FSGTELSLEKEWT 110

Query: 337 EEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +E       +I       + E  N IK  + +    +P  I + ++
Sbjct: 111 DELKKRKIPVIPVINKADILENTNDIKKQVEDTLGLMPIVISAKEK 156


>gi|150020700|ref|YP_001306054.1| GTP-binding protein Era [Thermosipho melanesiensis BI429]
 gi|189037682|sp|A6LL68|ERA_THEM4 RecName: Full=GTPase Era
 gi|149793221|gb|ABR30669.1| GTP-binding protein Era [Thermosipho melanesiensis BI429]
          Length = 299

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G  N GKSSL NA+  + V IV+D P TTR+ + +      + V   DT GI +  
Sbjct: 6   VALAGKPNVGKSSLVNAIVGRKVLIVSDKPQTTRNRINVIHTTNDFQVIFVDTPGIHKPL 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI 325
             + +  +K     ++  DLIL +  I++K+ I  P+   F ++
Sbjct: 66  YRLGEYMVKAAVSALKGVDLILTV--IDAKEGIGKPEAFVFDYV 107


>gi|307637371|gb|ADN79821.1| Ferrous iron transport protein B [Helicobacter pylori 908]
 gi|325995964|gb|ADZ51369.1| Ferrous iron transport protein B [Helicobacter pylori 2018]
 gi|325997559|gb|ADZ49767.1| Ferrous iron transport protein B [Helicobacter pylori 2017]
          Length = 642

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL NAL+   +  V +  G T D + + L  + + + I D  G    +
Sbjct: 6   IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLVHKEHQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQYDLIL 86


>gi|39935664|ref|NP_947940.1| GTP-binding protein HSR1-related [Rhodopseudomonas palustris
           CGA009]
 gi|39649517|emb|CAE28039.1| GTP binding protein-like [Rhodopseudomonas palustris CGA009]
          Length = 424

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 30/186 (16%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y++V L G++NAGKS+LFN L + DV    D+   T D     + L  G    +SDT
Sbjct: 188 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRAIQLPHGGKAMLSDT 246

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334
            G             + T  EV  ADLIL +++I+ +   +   ++D +      D  S 
Sbjct: 247 VGFISNLPTQLVAAFRATLEEVLEADLILHVRDISHEDAEAQQHDVDNVLRQLGVDAASG 306

Query: 335 YTEEY------------------------DH---LISSFTGEGLEELINKIKSILSNKFK 367
              E                         DH   L+S+ +GEG++EL+  I+  L+    
Sbjct: 307 RIVEVWNKIDRFEPEQRDELKNIAARRPEDHPCLLVSAVSGEGVDELLLSIEQRLAATRT 366

Query: 368 KLPFSI 373
            L  SI
Sbjct: 367 VLDLSI 372


>gi|295689384|ref|YP_003593077.1| GTP-binding proten HflX [Caulobacter segnis ATCC 21756]
 gi|295431287|gb|ADG10459.1| GTP-binding proten HflX [Caulobacter segnis ATCC 21756]
          Length = 446

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 32/171 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           + ++G++NAGKS+LFN L + +V +  D+   T D  + T+ L  +G    +SDT G   
Sbjct: 216 VALVGYTNAGKSTLFNRLTEAEV-LAKDMLFATLDPTLRTVKLP-DGRPAIMSDTVGF-- 271

Query: 280 TDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTY 335
             D+  +  E  + T  EV+ AD++L ++++ +    +  ++++ +   +G   D   T 
Sbjct: 272 ISDLPHELVEAFRATLEEVQEADVVLHVRDVANPDSEAQARDVETVLSELGVTLDGGKTV 331

Query: 336 TEEYDHL----------------------ISSFTGEGLEELINKIKSILSN 364
            E ++ +                      +S+ TGEG E L+ ++  ++ +
Sbjct: 332 VEVWNKIDLLSEDDREIIEGQARRVGASPVSAVTGEGCEALLRRVGGLIDD 382


>gi|311742267|ref|ZP_07716076.1| GTP-binding protein HflX [Aeromicrobium marinum DSM 15272]
 gi|311313895|gb|EFQ83803.1| GTP-binding protein HflX [Aeromicrobium marinum DSM 15272]
          Length = 458

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 29/177 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + I G++NAGKSSL N L    V    A+   +  TTR   T D    G +  +SDT G 
Sbjct: 242 VAIAGYTNAGKSSLLNRLTDAGVLVEDALFATLDPTTRRTQTSD----GRVYTMSDTVGF 297

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKN---IDFIF 324
           +R     +  E  + T  EV  +DL+L +          +I + +E+    +   +  I 
Sbjct: 298 VRHLPHQL-VEAFRSTLEEVAESDLVLHVVDGSHPDPAGQIAAVREVFADVDALGVPEII 356

Query: 325 IGTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +  K+D             E +  ++S+ TGEG++EL++ I++ L     ++   +P
Sbjct: 357 VVNKADAADPTVIRQLLAREPHAVVVSARTGEGIDELLDAIEADLPRPASRIEVVLP 413


>gi|85858938|ref|YP_461140.1| GTPase [Syntrophus aciditrophicus SB]
 gi|85722029|gb|ABC76972.1| GTPase [Syntrophus aciditrophicus SB]
          Length = 420

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 23/122 (18%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I +LG +N GKSS+ N +  +D+AI + + GTT DV+   ++L     V   DTAG
Sbjct: 10  NRLHIALLGRTNVGKSSILNMITGQDIAITSPVAGTTTDVVEKAMELLPLGPVLFLDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           +   DD+ +                   L  +  KK        D   + T+ D + TY 
Sbjct: 70  L---DDVSK-------------------LSSLRLKKTEKIFDRADVAILVTEPDFWGTYE 107

Query: 337 EE 338
           EE
Sbjct: 108 EE 109


>gi|27468201|ref|NP_764838.1| GTP-binding protein YqeH [Staphylococcus epidermidis ATCC 12228]
 gi|57867067|ref|YP_188740.1| GTP-binding protein YqeH [Staphylococcus epidermidis RP62A]
 gi|251811013|ref|ZP_04825486.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875975|ref|ZP_06284842.1| ribosome biogenesis GTPase YqeH [Staphylococcus epidermidis SK135]
 gi|293366443|ref|ZP_06613120.1| GTP-binding protein [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315747|gb|AAO04882.1|AE016748_116 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57637725|gb|AAW54513.1| GTP-binding protein, putative [Staphylococcus epidermidis RP62A]
 gi|251805523|gb|EES58180.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295000|gb|EFA87527.1| ribosome biogenesis GTPase YqeH [Staphylococcus epidermidis SK135]
 gi|291319212|gb|EFE59581.1| GTP-binding protein [Staphylococcus epidermidis M23864:W2(grey)]
 gi|319400931|gb|EFV89150.1| putative GTPase [Staphylococcus epidermidis FRI909]
 gi|329735274|gb|EGG71566.1| ribosome biogenesis GTPase YqeH [Staphylococcus epidermidis VCU045]
 gi|329737334|gb|EGG73588.1| ribosome biogenesis GTPase YqeH [Staphylococcus epidermidis VCU028]
          Length = 366

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 19/149 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RN   + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD + ++  
Sbjct: 157 VRNKDDVYIVGTTNVGKSTLINKLIEQSVGEKDVVTTSRFPGTTLDMIDIPLDEKSFMF- 215

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFI----- 323
             DT GI ++  +          + +   ++   + ++N K+ + F     ID++     
Sbjct: 216 --DTPGIIQSHQMTNYVSENELKIIIPKNEIKQRVYQLNEKQTLFFGGLARIDYVSGGKR 273

Query: 324 ----FIGTKSDLYSTYTEEYDHLISSFTG 348
               F     +++ T TE+ + L  S  G
Sbjct: 274 PLVCFFSNDLNIHRTKTEKANDLWKSQLG 302


>gi|220932088|ref|YP_002508996.1| GTP-binding protein Era [Halothermothrix orenii H 168]
 gi|259645948|sp|B8CXI2|ERA_HALOH RecName: Full=GTPase Era
 gi|219993398|gb|ACL70001.1| GTP-binding protein Era [Halothermothrix orenii H 168]
          Length = 294

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + V I +  P TTR+ V  I    EG +V + DT GI + 
Sbjct: 8   VSVIGRPNVGKSTLINNLIGQKVVITSPRPQTTRNSVRGIYTRPEGQIVFV-DTPGIHKA 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
            + ++   +++ +  +E+ D+I+ + + N     SF K  +FI+
Sbjct: 67  RNKLDNYMLEKAYESLEDIDVIIFMVDGNY----SFGKGDEFIY 106


>gi|323342097|ref|ZP_08082330.1| GTP-binding protein Era [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464522|gb|EFY09715.1| GTP-binding protein Era [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 298

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I I+G  NAGKS+L N + K+ +AIVT+   TTRD +      E Y +   DT GI
Sbjct: 8   ISIVGRPNAGKSTLINQIVKQKIAIVTEKAQTTRDAIIGVKTEEDYQLIFIDTPGI 63


>gi|329725392|gb|EGG61875.1| ribosome biogenesis GTPase YqeH [Staphylococcus epidermidis VCU144]
          Length = 366

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 19/149 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RN   + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD + ++  
Sbjct: 157 VRNKDDVYIVGTTNVGKSTLINKLIEQSVGEKDVVTTSRFPGTTLDMIDIPLDEKSFMF- 215

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFI----- 323
             DT GI ++  +          + +   ++   + ++N K+ + F     ID++     
Sbjct: 216 --DTPGIIQSHQMTNYVSENELKIIIPKNEIKQRVYQLNEKQTLFFGGLARIDYVSGGNR 273

Query: 324 ----FIGTKSDLYSTYTEEYDHLISSFTG 348
               F     +++ T TE+ + L  S  G
Sbjct: 274 PLVCFFSNDLNIHRTKTEKANDLWKSQLG 302


>gi|311063949|ref|YP_003970674.1| GTP-binding protein HflX [Bifidobacterium bifidum PRL2010]
 gi|313139783|ref|ZP_07801976.1| GTPase [Bifidobacterium bifidum NCIMB 41171]
 gi|310866268|gb|ADP35637.1| HflX GTP-binding protein [Bifidobacterium bifidum PRL2010]
 gi|313132293|gb|EFR49910.1| GTPase [Bifidobacterium bifidum NCIMB 41171]
          Length = 500

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 31/217 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G++NAGKSSL N L      +   +  T    +      +G L    DT G     
Sbjct: 265 IAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRARAKDGRLYAYVDTVGFVRNL 324

Query: 282 DIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPK---- 318
                E  K T  EV  AD+IL                   +L +I   +EI  P+    
Sbjct: 325 PTQLIEAFKSTLEEVAEADIILHVVDGSHPDPFSQIDAVNDVLADIEGAEEI--PRVVVF 382

Query: 319 -NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
             ID I   T+  L +   E    L+S+ TGEGL++L+ +I+S+L      +   +P   
Sbjct: 383 NKIDRIDAATRERLAALEPEA--SLVSAATGEGLDDLLRRIESMLPVPGVHVSALLPYDA 440

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAE-NLRLAS 413
             L  LS    Y  + S++ +  G+ I A+ + RLA+
Sbjct: 441 GSL--LSHVREYGNVDSVDYRADGIWIEADVDRRLAA 475


>gi|224282624|ref|ZP_03645946.1| GTP-binding protein [Bifidobacterium bifidum NCIMB 41171]
 gi|310287084|ref|YP_003938342.1| GTP-binding protein [Bifidobacterium bifidum S17]
 gi|309251020|gb|ADO52768.1| GTP-binding protein [Bifidobacterium bifidum S17]
          Length = 521

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 31/217 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G++NAGKSSL N L      +   +  T    +      +G L    DT G     
Sbjct: 286 IAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRARAKDGRLYAYVDTVGFVRNL 345

Query: 282 DIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPK---- 318
                E  K T  EV  AD+IL                   +L +I   +EI  P+    
Sbjct: 346 PTQLIEAFKSTLEEVAEADIILHVVDGSHPDPFSQIDAVNDVLADIEGAEEI--PRVVVF 403

Query: 319 -NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
             ID I   T+  L +   E    L+S+ TGEGL++L+ +I+S+L      +   +P   
Sbjct: 404 NKIDRIDAATRERLAALEPEA--SLVSAATGEGLDDLLRRIESMLPVPGVHVSALLPYDA 461

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAE-NLRLAS 413
             L  LS    Y  + S++ +  G+ I A+ + RLA+
Sbjct: 462 GSL--LSHVREYGNVDSVDYRADGIWIEADVDRRLAA 496


>gi|314981203|gb|EFT25297.1| GTP-binding protein Era [Propionibacterium acnes HL110PA3]
 gi|315091774|gb|EFT63750.1| GTP-binding protein Era [Propionibacterium acnes HL110PA4]
 gi|315103278|gb|EFT75254.1| GTP-binding protein Era [Propionibacterium acnes HL050PA2]
 gi|315105483|gb|EFT77459.1| GTP-binding protein Era [Propionibacterium acnes HL030PA1]
          Length = 342

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 27/192 (14%)

Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E 
Sbjct: 30  ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 89

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316
             + + DT G+ +   ++ +      F      D+I +    N +          +I+  
Sbjct: 90  SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAEL 149

Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362
           P+    + + TKSDL S     E+   I    GE G+E            E +++++ ++
Sbjct: 150 PRRPTLVALATKSDLVSKARMAEHLATIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDVI 209

Query: 363 SNKFKKLPFSIP 374
           ++   + P   P
Sbjct: 210 ASLLPEGPAYYP 221


>gi|314923092|gb|EFS86923.1| GTP-binding protein Era [Propionibacterium acnes HL001PA1]
          Length = 342

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 27/192 (14%)

Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E 
Sbjct: 30  ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 89

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316
             + + DT G+ +   ++ +      F      D+I +    N +          +I+  
Sbjct: 90  SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAEL 149

Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362
           P+    + + TKSDL S     E+   I    GE G+E            E +++++ ++
Sbjct: 150 PRRPTLVALATKSDLVSKARMAEHLATIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDVI 209

Query: 363 SNKFKKLPFSIP 374
           ++   + P   P
Sbjct: 210 ASLLPEGPAYYP 221


>gi|302871791|ref|YP_003840427.1| GTP-binding protein Era [Caldicellulosiruptor obsidiansis OB47]
 gi|302574650|gb|ADL42441.1| GTP-binding protein Era [Caldicellulosiruptor obsidiansis OB47]
          Length = 300

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 20/144 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + ++G  N GKS+L N L  K ++I++  P TTR+ +   L LE   +   DT G
Sbjct: 4   KSGF-VALIGRPNVGKSTLLNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFPKNIDFI 323
           +    + + +  +K +   ++  DLIL + E             I   K++  PK    I
Sbjct: 63  VHPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIEKLKDVETPK----I 118

Query: 324 FIGTKSDLYSTYTEEYDHLISSFT 347
            +  KSDL S   E  + L S F+
Sbjct: 119 LVLNKSDLAS--KENVEMLKSIFS 140


>gi|42522382|ref|NP_967762.1| GTP-binding protein [Bdellovibrio bacteriovorus HD100]
 gi|81829281|sp|Q6MPP2|ENGB_BDEBA RecName: Full=Probable GTP-binding protein EngB
 gi|39574914|emb|CAE78755.1| GTP-binding protein [Bdellovibrio bacteriovorus HD100]
          Length = 200

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 7/71 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-------DVLTIDLDLEGYLVKISDT 274
           + I G SNAGKSS  NAL K  +A V+  PG TR       D   + +D+ GY       
Sbjct: 34  VAIAGRSNAGKSSFINALTKNKIAKVSSTPGKTRLLNFFELDQSYVMVDMPGYGFAARSG 93

Query: 275 AGIRETDDIVE 285
             +RE   ++E
Sbjct: 94  DEMREWHRMIE 104


>gi|13357826|ref|NP_078100.1| GTPase EngB [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|167971952|ref|ZP_02554229.1| ATP/GTP-binding protein [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|168282428|ref|ZP_02690095.1| ATP/GTP-binding protein [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|170762083|ref|YP_001752349.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma parvum
           serovar 3 str. ATCC 27815]
 gi|13124226|sp|Q9PQM5|ENGB_UREPA RecName: Full=Probable GTP-binding protein EngB
 gi|189037196|sp|B1AIQ5|ENGB_UREP2 RecName: Full=Probable GTP-binding protein EngB
 gi|11356756|pir||D82913 conserved hypothetical ATP/GTP-binding protein UU266 [imported] -
           Ureaplasma urealyticum
 gi|6899237|gb|AAF30675.1|AE002123_8 conserved hypothetical ATP/GTP-binding protein [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827660|gb|ACA32922.1| ATP/GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|182675765|gb|EDT87670.1| ATP/GTP-binding protein [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186700634|gb|EDU18916.1| ATP/GTP-binding protein [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 208

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 6/54 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID------LDLEGY 267
           ++I ++G SN GKSSL NALA K +A  ++ PG T+ V   D      +DL GY
Sbjct: 20  FEICVIGRSNVGKSSLINALANKKIARTSNTPGRTQLVNFFDFNNFRLVDLPGY 73


>gi|50842423|ref|YP_055650.1| GTP-binding protein Era [Propionibacterium acnes KPA171202]
 gi|282854117|ref|ZP_06263454.1| GTP-binding protein Era [Propionibacterium acnes J139]
 gi|50840025|gb|AAT82692.1| GTP-binding protein Era homolog [Propionibacterium acnes KPA171202]
 gi|282583570|gb|EFB88950.1| GTP-binding protein Era [Propionibacterium acnes J139]
          Length = 340

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 27/192 (14%)

Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E 
Sbjct: 28  ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 87

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316
             + + DT G+ +   ++ +      F      D+I +    N +          +I+  
Sbjct: 88  SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAEL 147

Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362
           P+    + + TKSDL S     E+   I    GE G+E            E +++++ ++
Sbjct: 148 PRRPTLVALATKSDLVSKARMAEHLATIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDVI 207

Query: 363 SNKFKKLPFSIP 374
           ++   + P   P
Sbjct: 208 ASLLPEGPAYYP 219


>gi|86158078|ref|YP_464863.1| small GTP-binding protein Era [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774589|gb|ABC81426.1| small GTP-binding protein Era [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  N GKS+L N +  + VAIV+  P TTR  +    ++ G  V   DT G
Sbjct: 10  RAGF-VAIVGRPNVGKSTLLNRVLGEHVAIVSPRPQTTRTRILGVHNVPGAQVAFFDTPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           + +    + +  ++     +   D +L+L E  +  E
Sbjct: 69  LHKAKGALNRRMVETALSTLSEVDAVLMLIEAGTGPE 105


>gi|311030172|ref|ZP_07708262.1| GTP-binding proten HflX [Bacillus sp. m3-13]
          Length = 422

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 26/194 (13%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK----KDVAIVTDIPGTTRDVL 258
           I SH  + +        +++ ++G++NAGKS++FN L +    ++  +   +  TTR V+
Sbjct: 185 IVSHRERYRERRKRNQAFQLSLVGYTNAGKSTIFNRLTEAGTFEENLLFATLDPTTRKVM 244

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
                  G+   ++DT G  +          + T  EV  ADLIL + + +S   ++  K
Sbjct: 245 MPS----GFNALLTDTVGFIQDLPTSLVAAFRSTLEEVTEADLILHVVDSSSPDHVNHEK 300

Query: 319 NID------------FIFIGTKSD-----LYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            +D             + I  K D         Y +E  H IS+     +  LINKI+S+
Sbjct: 301 TVDKLLKELGVEGVPVLTIYNKKDQTAEGFTPAYNQEILH-ISALDPMDITLLINKIESL 359

Query: 362 LSNKFKKLPFSIPS 375
           +  + +     +PS
Sbjct: 360 IKVQMEPYHIVVPS 373


>gi|255325164|ref|ZP_05366270.1| GTP-binding protein HflX [Corynebacterium tuberculostearicum SK141]
 gi|255297729|gb|EET77040.1| GTP-binding protein HflX [Corynebacterium tuberculostearicum SK141]
          Length = 497

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 36/206 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +I I G++NAGKSSL NA+    V    A+   +  TTR     D    G  V  +DT G
Sbjct: 270 QIAIAGYTNAGKSSLINAMTGAGVLVEDALFATLDPTTRRATLAD----GRQVVFTDTVG 325

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF----------P 317
                     E  K T  EV  AD++L          LK+I +  ++ +          P
Sbjct: 326 FVRHLPTQLVEAFKSTLEEVLAADIMLHVVDGSDPFPLKQIEAVNQVIYDIVSETGEQAP 385

Query: 318 KNIDFIFIGTKSD--LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPF 371
             I  I    ++D  + +      DH     +S+ TGEG++EL  +++  L+++   +  
Sbjct: 386 PEIIVINKIDQADPLVLAELRHVLDHEDVVYVSARTGEGIDELTARVELFLNSRDSHVKL 445

Query: 372 SIPSHKRHL---YHLSQTVRYLEMAS 394
            +P  +  +    H   TVR+ E  +
Sbjct: 446 QVPFTRGDVVARVHAEGTVRHEEYTA 471


>gi|298530546|ref|ZP_07017948.1| GTP-binding protein Era [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509920|gb|EFI33824.1| GTP-binding protein Era [Desulfonatronospira thiodismutans ASO3-1]
          Length = 303

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  NAGKS+L N L  + VAIVT    TTR+ ++  L  + Y V   DT G+ +    
Sbjct: 15  LVGPPNAGKSTLMNTLVGEKVAIVTPKAQTTRNRISGILSTDRYQVVFMDTPGVNKARGK 74

Query: 284 VEKEGIKRTFLE-VENADLILLL 305
           +  E + R+ +E + +AD++LL+
Sbjct: 75  L-GELLNRSAMEGLNSADVVLLV 96


>gi|188990195|ref|YP_001902205.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167731955|emb|CAP50141.1| GTP-binding protein [Xanthomonas campestris pv. campestris]
          Length = 222

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            GY++   G SNAGKSS  NAL +++ +A V+  PG T+ ++   +  E YLV +
Sbjct: 39  GGYEVAFAGRSNAGKSSALNALTRQNSLARVSKTPGRTQQLVFFQIQPERYLVDL 93


>gi|87301104|ref|ZP_01083945.1| GTP-binding protein Era [Synechococcus sp. WH 5701]
 gi|87284072|gb|EAQ76025.1| GTP-binding protein Era [Synechococcus sp. WH 5701]
          Length = 343

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ + ++G  N GKS+L N L  + VAI + +  TTR+ L   L      + + D
Sbjct: 33  EGFRSGF-VALIGRPNVGKSTLLNHLVGEKVAITSPVAQTTRNRLRAILTTPSAQLVLLD 91

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           T GI +   ++ +  +K     +   D++LLL
Sbjct: 92  TPGIHKPHHLLGERLVKSARSAIGEVDVVLLL 123


>gi|294139257|ref|YP_003555235.1| GTP-binding protein HflX [Shewanella violacea DSS12]
 gi|293325726|dbj|BAJ00457.1| GTP-binding protein HflX [Shewanella violacea DSS12]
          Length = 432

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 42/231 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFN+L   DV     +  T    L   LDL    + ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNSLTVSDVYAADQLFATLDPTLR-KLDLPDGAIILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFIG 326
             D+V     K T  E   ADL+L + + +               KEI     I  + + 
Sbjct: 259 PHDLV--AAFKSTLQETREADLLLHIVDCHDDNMEDNFEQVQLVLKEIG-ADEIPQLVVC 315

Query: 327 TKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            K DL    +   D+          +S+   +GL++L   I  I+     +L   IP+  
Sbjct: 316 NKIDLLEDVSPRIDYNDEGVPTRVWVSAQQQKGLDQLKEAINQIVGRATLELTLRIPATA 375

Query: 378 RHLYHLSQTVRYLEMASLNEK------DCGLDII---AENLRLASVSLGKI 419
            H  +L Q   +  + ++ +K      DC L +    A+ LRL   S G++
Sbjct: 376 GH--YLGQ---FYRLDAIQQKEFDDLGDCILSVRLLEADWLRLVKQSQGEL 421


>gi|269798900|ref|YP_003312800.1| small GTP-binding protein [Veillonella parvula DSM 2008]
 gi|269095529|gb|ACZ25520.1| small GTP-binding protein [Veillonella parvula DSM 2008]
          Length = 456

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I   G  NAGKS+L N L  + V++V+D+ GTT D ++  ++ L    V I+DTAG
Sbjct: 8   NRIHIGFFGRCNAGKSTLINMLTDQPVSLVSDVAGTTTDPVSKAMEILPLGPVVITDTAG 67

Query: 277 IRETDDI 283
           I +T ++
Sbjct: 68  IDDTTEL 74


>gi|197294660|ref|YP_001799201.1| GTP-binding protein Era [Candidatus Phytoplasma australiense]
 gi|171853987|emb|CAM11950.1| Glycyl-tRNA synthetase [Candidatus Phytoplasma australiense]
          Length = 292

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + +AI +D P TTR  ++ I  + +   + + DT GI + 
Sbjct: 8   IAIVGRPNVGKSTLLNVLTNQKIAITSDKPQTTRHKIVGICHESDAQYIFV-DTPGINQY 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
             ++ ++  + +F  + + D+IL + +
Sbjct: 67  KYLLNQKMNQISFRSISDVDVILFVTD 93


>gi|168308581|ref|ZP_02691256.1| ATP/GTP-binding protein [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|171902437|gb|EDT48726.1| ATP/GTP-binding protein [Ureaplasma parvum serovar 1 str. ATCC
           27813]
          Length = 208

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 6/54 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID------LDLEGY 267
           ++I ++G SN GKSSL NALA K +A  ++ PG T+ V   D      +DL GY
Sbjct: 20  FEICVIGRSNVGKSSLINALANKKIARTSNTPGRTQLVNFFDFNNFRLVDLPGY 73


>gi|197122610|ref|YP_002134561.1| GTP-binding protein Era [Anaeromyxobacter sp. K]
 gi|196172459|gb|ACG73432.1| GTP-binding protein Era [Anaeromyxobacter sp. K]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  N GKS+L N +  + VAIV+  P TTR  +    ++ G  V   DT G
Sbjct: 10  RAGF-VAIVGRPNVGKSTLLNRVLGEHVAIVSPRPQTTRTRILGVHNVPGAQVAFFDTPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           + +    + +  ++     +   D +L+L E  +  E
Sbjct: 69  LHKAKGALNRRMVETALSTLSEVDAVLMLIEAGTGPE 105


>gi|7449539|pir||B65042 yfjP protein - Escherichia coli (strain K-12)
          Length = 289

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + AGKSSL NAL   +V+ V+D+   TRD L   L +  + + I D  G+ E+ 
Sbjct: 41  IGIMGKTGAGKSSLCNALFAGEVSPVSDVAACTRDPLRFRLQIGEHFMTIVDLPGVGES- 99

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            + + E       ++   DLIL L
Sbjct: 100 GVRDTEYAALYREQLPRLDLILWL 123


>gi|304373109|ref|YP_003856318.1| GTP-binding protein era-like protein [Mycoplasma hyorhinis HUB-1]
 gi|304309300|gb|ADM21780.1| GTP-binding protein era-like protein [Mycoplasma hyorhinis HUB-1]
 gi|330723266|gb|AEC45636.1| GTPase Era [Mycoplasma hyorhinis MCLD]
          Length = 292

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N+GKS++ N +   D++IV+  P TTRD +      + + +   DT G +  +
Sbjct: 6   VSIIGLPNSGKSTMLNTILDYDLSIVSYKPQTTRDQINGIYSEDDFQIVFVDTPGFQSEN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
            +  K   K     +E+ DL L L  +N K
Sbjct: 66  SLFSKVLNKNAISSLEDIDLALFLHPVNRK 95


>gi|255292518|dbj|BAH89633.1| GTP-binding protein EngA [uncultured bacterium]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I +LG  N GKS+LFN L +   A+V D PG TRD L     L      + DT G+
Sbjct: 5   IALLGRPNVGKSTLFNRLTRTRDALVADFPGVTRDRLVGSGQLGDRPFWVVDTGGL 60


>gi|192291246|ref|YP_001991851.1| GTP-binding proten HflX [Rhodopseudomonas palustris TIE-1]
 gi|192284995|gb|ACF01376.1| GTP-binding proten HflX [Rhodopseudomonas palustris TIE-1]
          Length = 455

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 28/185 (15%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           R  Y++V L G++NAGKS+LFN L + DV     +  T    L       G    +SDT 
Sbjct: 219 RVPYRVVALVGYTNAGKSTLFNRLTRADVQAADMLFATLDPTLRAIQLPHGGKAMLSDTV 278

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335
           G             + T  EV  ADLIL +++I+ +   +   ++D +      D  S  
Sbjct: 279 GFISNLPTQLVAAFRATLEEVLEADLILHVRDISHEDAEAQQHDVDNVLRQLGVDAASGR 338

Query: 336 TEEY------------------------DH---LISSFTGEGLEELINKIKSILSNKFKK 368
             E                         DH   L+S+ +GEG++EL+  I+  L+     
Sbjct: 339 IVEVWNKIDRFEPEQRDELKNIAARRPEDHPCLLVSAVSGEGVDELLLSIEQRLAATRTV 398

Query: 369 LPFSI 373
           L  SI
Sbjct: 399 LDLSI 403


>gi|146296963|ref|YP_001180734.1| GTP-binding protein Era [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|189037251|sp|A4XKV8|ERA_CALS8 RecName: Full=GTPase Era
 gi|145410539|gb|ABP67543.1| GTP-binding protein Era [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 300

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 29/192 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + ++G  N GKS+L N    K ++I++  P TTR+ +   L L+   +   DT G
Sbjct: 4   KSGF-VALIGRPNVGKSTLMNYFVGKKISIISPKPQTTRNSIKGILTLDDAQIIFIDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFPKNIDFI 323
           +    + + +  +K +   ++  DLIL + E             +   KE+  PK    I
Sbjct: 63  VHPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDSGIGPWDEAILEKLKEVQTPK----I 118

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI-------LSNKFKKLPFSIPSH 376
            +  K+DL S   E  + L S F+G    E I +I +I       L  K KKL    P  
Sbjct: 119 LVLNKADLAS--KENIEILKSLFSGRLSFEFIIEIAAINGYNCDVLLEKIKKLLPEGP-- 174

Query: 377 KRHLYHLSQTVR 388
           K +L  ++  VR
Sbjct: 175 KYYLDDMTTDVR 186


>gi|123484501|ref|XP_001324283.1| small GTP-binding protein [Trichomonas vaginalis G3]
 gi|121907163|gb|EAY12060.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
          Length = 193

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 24/173 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP---GTTRDVLTIDLDLEGYLVKISDTAG 276
           YKI++LG+S  GK+S+ +   K+      D+    G     + I+L  +   +K+ DTAG
Sbjct: 9   YKIILLGNSGTGKTSIID--RKRLGTTAPDLHPTIGCNSTDMVINLKDKSVKLKVWDTAG 66

Query: 277 IRETDDIVE--KEGIKRTFLEVENADL--ILLLKEINSKKEISFPKNIDFIFIGTKSDLY 332
             E   IV     G     L  +  D+  I  L    S    S P  + F  +G K D+ 
Sbjct: 67  QEEYKSIVPIYTRGAHAALLVFDVTDMSSIQSLDGWRSMLLESEPTEVPFFVVGNKIDMK 126

Query: 333 S----------TYTEEYD---HLISSFTGEGLEELINKIKSILSNK--FKKLP 370
           S          TY   Y    + +S+ +G+G+ EL  K+   +S +  F+K P
Sbjct: 127 SENTISREIAQTYATRYSADLYFVSALSGQGINELFEKVAEKVSERKSFEKDP 179


>gi|95930679|ref|ZP_01313413.1| Small GTP-binding protein domain [Desulfuromonas acetoxidans DSM
           684]
 gi|95133331|gb|EAT14996.1| Small GTP-binding protein domain [Desulfuromonas acetoxidans DSM
           684]
          Length = 436

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG---IR 278
           + I+G  N GKS+LFN +  +  AIV D PG TRD    D+        + DT G   + 
Sbjct: 4   VAIVGRPNVGKSTLFNRILGERKAIVEDYPGVTRDRNYADVTRYDKPFTLIDTGGFEPVS 63

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
           E   +V+    +++ L +E AD+IL +
Sbjct: 64  EVRMLVQMR--EQSQLAIEEADVILFV 88



 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 31/66 (46%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N L   +  +     GTTRD +            + DTAGIR  
Sbjct: 176 RLAVIGRPNVGKSSLVNKLLGYERVVANPTAGTTRDSVDTPFTYNNQRYVLIDTAGIRRK 235

Query: 281 DDIVEK 286
             + +K
Sbjct: 236 GKVSQK 241


>gi|302670578|ref|YP_003830538.1| GTP-binding protein Era [Butyrivibrio proteoclasticus B316]
 gi|302395051|gb|ADL33956.1| GTP-binding protein Era [Butyrivibrio proteoclasticus B316]
          Length = 364

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 30/175 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I ++G  N GKS+L N +  + +AI ++ P TTR+ ++T+  D +  ++ + DT GI ++
Sbjct: 10  ITLIGRPNVGKSTLMNHMIGQKIAITSNKPQTTRNKIMTVYTDDDCQMIFL-DTPGIHDS 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP-----KNIDFI 323
            + + +   K     +E  D++L L E            I   K+   P       ID +
Sbjct: 69  KNKLGEYMTKVAKSTLEEVDVVLWLVEPSTFIGAGEKSIIEELKKCRKPVILVINKIDTV 128

Query: 324 FIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                    + Y +E D      +++  G+ ++EL++ IK +       LPF  P
Sbjct: 129 SKDNLDKFENAYRQEMDFDRVVKVAALKGQNIDELMDAIKKL-------LPFGPP 176


>gi|218887297|ref|YP_002436618.1| GTP-binding protein Era [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226741205|sp|B8DQN1|ERA_DESVM RecName: Full=GTPase Era
 gi|218758251|gb|ACL09150.1| GTP-binding protein Era [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 307

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 17/157 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + +LG  NAGKS+L N+     VAIVT    TTR+ +   L      V   DT G
Sbjct: 7   RCGW-VALLGPPNAGKSTLLNSALGHKVAIVTPRAQTTRNQIVGILSEPDAQVIFMDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           I +    + K  ++  +  + +AD+IL++ + +      + K  DF+    K  + +   
Sbjct: 66  IHQQRGRMNKILLQTAWQSMHSADVILVMLDAD-----LYIKKPDFLENDVKPLMDAVAA 120

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           EE   +++          +NK+  +  +K K LP  I
Sbjct: 121 EERPVIVA----------VNKV-DLFRDKSKMLPLFI 146


>gi|49176249|ref|YP_026173.1| CP4-57 prophage; predicted GTP-binding protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89109431|ref|AP_003211.1| predicted GTP-binding protein [Escherichia coli str. K-12 substr.
           W3110]
 gi|170082232|ref|YP_001731552.1| CP4-57 prophage; GTP-binding protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|238901790|ref|YP_002927586.1| CP4-57 prophage; putative GTP-binding protein [Escherichia coli
           BW2952]
 gi|54042338|sp|P52131|YFJP_ECOLI RecName: Full=Uncharacterized protein yfjP
 gi|48994902|gb|AAT48146.1| CP4-57 prophage; predicted GTP-binding protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|85675495|dbj|BAE76767.1| predicted GTP-binding protein [Escherichia coli str. K12 substr.
           W3110]
 gi|169890067|gb|ACB03774.1| CP4-57 prophage; predicted GTP-binding protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|238860627|gb|ACR62625.1| CP4-57 prophage; predicted GTP-binding protein [Escherichia coli
           BW2952]
 gi|260448297|gb|ACX38719.1| GTP-binding protein HSR1-related protein [Escherichia coli DH1]
 gi|315137248|dbj|BAJ44407.1| CP4-57 prophage; putative GTP-binding protein [Escherichia coli
           DH1]
          Length = 287

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + AGKSSL NAL   +V+ V+D+   TRD L   L +  + + I D  G+ E+ 
Sbjct: 39  IGIMGKTGAGKSSLCNALFAGEVSPVSDVAACTRDPLRFRLQIGEHFMTIVDLPGVGES- 97

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            + + E       ++   DLIL L
Sbjct: 98  GVRDTEYAALYREQLPRLDLILWL 121


>gi|28493018|ref|NP_787179.1| bifunctional cytidylate kinase/GTP-binding protein [Tropheryma
           whipplei str. Twist]
 gi|28572231|ref|NP_789011.1| bifunctional cytidylate kinase/GTP-binding protein [Tropheryma
           whipplei TW08/27]
 gi|28410362|emb|CAD66748.1| putative GTP-binding protein [Tropheryma whipplei TW08/27]
 gi|28476058|gb|AAO44148.1| cytidylate kinase/GTP-binding protein fusion [Tropheryma whipplei
           str. Twist]
          Length = 686

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 12/86 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N L     AIV D+ GTTRD L         L  I D + +   
Sbjct: 427 RVALIGRPNVGKSSLINQLTNSRRAIVDDLAGTTRDPLDA-------LAVIGDKSWL--- 476

Query: 281 DDIVEKEGIKRTFLEVENADLILLLK 306
              V+  G++R F   + AD    L+
Sbjct: 477 --FVDTAGLRRKFKSQKGADFYAYLR 500



 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  +VI+G  N GKS+L N +  +  A+V + PG TRD +       G    + DT G  
Sbjct: 254 GATVVIVGRPNVGKSALVNCILGRREAVVENRPGVTRDRVVYPAFWAGRPFTLVDTGGWE 313

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              + ++ E + +  + +  AD+I+ + ++ 
Sbjct: 314 CDAEGLDAEVVAQAEIGMSIADIIIFVVDVQ 344


>gi|301167245|emb|CBW26827.1| GTP-binding protein [Bacteriovorax marinus SJ]
          Length = 335

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG  N GKSSL N L   D+++VT+   TTR+ +     ++   + + DT G+ +T+
Sbjct: 24  VAVLGAPNVGKSSLVNYLLGMDLSVVTNKAQTTRNKIHCVFTVDRTEIVLVDTPGLHKTN 83

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             + K   ++    V+ ADL LLL
Sbjct: 84  QELNKRLNEQAREGVDGADLNLLL 107


>gi|171780310|ref|ZP_02921214.1| hypothetical protein STRINF_02098 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281658|gb|EDT47093.1| hypothetical protein STRINF_02098 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 372

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R G  + ++G +N GKS+L NA+ K     KD+   +  PGTT D + I LD   Y 
Sbjct: 158 EKLRKGRDVYVVGVTNVGKSTLINAIIKEITGEKDIITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +    G K              LK I+ KKEI  PK 
Sbjct: 217 --IFDTPGIIHRHQMAHYLGDKN-------------LKYISPKKEIK-PKT 251


>gi|220917393|ref|YP_002492697.1| GTP-binding protein Era [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955247|gb|ACL65631.1| GTP-binding protein Era [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  N GKS+L N +  + VAIV+  P TTR  +    ++ G  V   DT G
Sbjct: 10  RAGF-VAIVGRPNVGKSTLLNRVLGEHVAIVSPRPQTTRTRILGVHNVPGAQVAFFDTPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           + +    + +  ++     +   D +L+L E  +  E
Sbjct: 69  LHKAKGALNRRMVETALSTLSEVDAVLMLIEAGTGPE 105


>gi|21241496|ref|NP_641078.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|294627677|ref|ZP_06706259.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294667105|ref|ZP_06732330.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|24418373|sp|Q8PPG1|ENGB_XANAC RecName: Full=Probable GTP-binding protein EngB
 gi|21106841|gb|AAM35614.1| GTP-binding protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|292598029|gb|EFF42184.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292603115|gb|EFF46541.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 214

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            GY++   G SNAGKSS  NAL +++ +A V+  PG T+ ++   +  E YLV +
Sbjct: 24  GGYEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQIQPERYLVDL 78


>gi|163784387|ref|ZP_02179279.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880342|gb|EDP73954.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1]
          Length = 312

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N +    V+IV+  P TTR  +L +  D +  ++ + DT G+++ 
Sbjct: 22  VALVGRPNVGKSTLLNNILGVKVSIVSPKPQTTRMRILGVKHDKDAQIIFL-DTPGVQKG 80

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            DI+ K  ++     +E ADLI ++
Sbjct: 81  KDILTKTVVESAVSSMEEADLIAMI 105


>gi|1033127|gb|AAA79801.1| ORF_o289 [Escherichia coli str. K-12 substr. MG1655]
          Length = 289

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           I I+G + AGKSSL NAL   +V+ V+D+   TRD L   L +  + + I D  G+ E+
Sbjct: 41  IGIMGKTGAGKSSLCNALFAGEVSPVSDVAACTRDPLRFRLQIGEHFMTIVDLPGVGES 99


>gi|302841942|ref|XP_002952515.1| Era-like protein [Volvox carteri f. nagariensis]
 gi|300262154|gb|EFJ46362.1| Era-like protein [Volvox carteri f. nagariensis]
          Length = 453

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 12/80 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R+GY + ++G  NAGKS+L NAL  + ++IVT  P TTR  ++ I  D + Y + + DT 
Sbjct: 156 RSGY-VAVIGKPNAGKSTLINALVGQKLSIVTYKPQTTRHRIMGIASD-KHYQMILFDTP 213

Query: 276 GIRETDDIVEKEGIKRTFLE 295
           G+ E          KRT LE
Sbjct: 214 GVIER---------KRTKLE 224


>gi|73667900|ref|YP_303915.1| GTP-binding protein [Methanosarcina barkeri str. Fusaro]
 gi|72395062|gb|AAZ69335.1| GTP-binding protein HflX [Methanosarcina barkeri str. Fusaro]
          Length = 436

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 2/103 (1%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           R G+ ++ L G++NAGKS+LFNA+  + V    ++  TT   +T  LDL G    ++DT 
Sbjct: 202 RKGFSLISLAGYTNAGKSTLFNAIVDESVE-AKNMLFTTLVPMTRALDLGGRKALLTDTV 260

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
           G  E       +  K T  E+  +DLILL+ + + K E    K
Sbjct: 261 GFIEDLPHWLVDAFKSTLDEIFLSDLILLVVDASEKPETILQK 303


>gi|288817910|ref|YP_003432257.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
 gi|288787309|dbj|BAI69056.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
 gi|308751509|gb|ADO44992.1| GTP-binding protein Obg/CgtA [Hydrogenobacter thermophilus TK-6]
          Length = 343

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 77/164 (46%), Gaps = 34/164 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           I I+G  NAGKS+L + L K    I  D P TT   +   + LE G  + ++D  G+ E 
Sbjct: 161 IGIIGLPNAGKSTLISKLTKAKPKI-ADYPFTTLSPVLGVMQLEDGRRIVLADIPGLIE- 218

Query: 281 DDIVEKEGIKRTFLE-VENADLILLL---------------KEINSKKEISFPKNID--F 322
            D    +G+   FL  +E   L+L L               K++N++ E   PK ++   
Sbjct: 219 -DASAGKGLGLEFLRHIERTKLLLHLIDVSDLRQTDPVDAFKKVNAEMEKYHPKLLEKRQ 277

Query: 323 IFIGTKSDLYS------TYTEEYDHL------ISSFTGEGLEEL 354
           I +GTK D+ S         EE+  +      ISS TGEGLEEL
Sbjct: 278 IVVGTKIDMLSDKNTLQKLEEEFSKMGYPFVAISSHTGEGLEEL 321


>gi|258541745|ref|YP_003187178.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-01]
 gi|256632823|dbj|BAH98798.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-01]
 gi|256635880|dbj|BAI01849.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-03]
 gi|256638935|dbj|BAI04897.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-07]
 gi|256641989|dbj|BAI07944.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-22]
 gi|256645044|dbj|BAI10992.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-26]
 gi|256648099|dbj|BAI14040.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-32]
 gi|256651152|dbj|BAI17086.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654143|dbj|BAI20070.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-12]
          Length = 300

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 24/171 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKIS 272
           +  R G+  ++ G  NAGKS+L N +A   ++IV+    TTR  VL I +     ++ + 
Sbjct: 4   DTTRCGFAALV-GAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRVLGILMRGHSQILLV- 61

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------------KKEISF 316
           DT GI      +++  +   +   E+AD+ LLL +  S                K+++  
Sbjct: 62  DTPGIFRPRRKLDRAMVAAAWTGAEDADITLLLVDARSGLTEAVQTIIERLAETKRKVWL 121

Query: 317 PKN-IDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELINKIKSIL 362
             N  D +       L ++ TE    E+  ++S+ TG G+E+L++K+ + L
Sbjct: 122 VLNKTDLVPATALLPLTASITEKLPVEHVFMVSARTGNGVEDLLDKLAASL 172


>gi|154253315|ref|YP_001414139.1| GTP-binding protein Era [Parvibaculum lavamentivorans DS-1]
 gi|154157265|gb|ABS64482.1| GTP-binding protein Era [Parvibaculum lavamentivorans DS-1]
          Length = 318

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISD 273
           I R G+ + I+G  NAGKS+L N L    VAIVT    TTR  +   + +EG   +   D
Sbjct: 22  ITRCGF-VAIIGAPNAGKSTLLNQLVGSKVAIVTHKVQTTRSRIR-GIAMEGNTQIVFVD 79

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS 329
           T GI +    +++  +   +    ++DLI+L+ ++ S ++     ++D I  G KS
Sbjct: 80  TPGIFKPKRRLDRAMVDAAWGGAGDSDLIVLMVDMESGRD----SDVDRILEGLKS 131


>gi|320547439|ref|ZP_08041726.1| GTP-binding protein [Streptococcus equinus ATCC 9812]
 gi|320447916|gb|EFW88672.1| GTP-binding protein [Streptococcus equinus ATCC 9812]
          Length = 372

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R G  + ++G +N GKS+L NA+ K     KD+   +  PGTT D + I LD   Y 
Sbjct: 158 EKLRKGRDVYVVGVTNVGKSTLINAIIKEITGEKDIITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +    G K              LK I+ KKEI  PK 
Sbjct: 217 --IFDTPGIIHRHQMAHYLGDKN-------------LKYISPKKEIK-PKT 251


>gi|209528109|ref|ZP_03276585.1| GTP-binding protein Era [Arthrospira maxima CS-328]
 gi|209491468|gb|EDZ91847.1| GTP-binding protein Era [Arthrospira maxima CS-328]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 29/181 (16%)

Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           GYK   + I+G  N GKS+L N L  + +AI + I  TTR+ L   L  E   +   DT 
Sbjct: 15  GYKSGFVGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTESAQIIFVDTP 74

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFI 323
           GI +    + K  +K   L + + D+++ + +            ++       P  +   
Sbjct: 75  GIHKPHHQLGKVLVKNAKLAIASVDVLVFVVDSSVMSGGGDRYIVDLLTHTKVPVILGLN 134

Query: 324 FIGTKSDLYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               + D Y    + Y              S+ TG GLE L N    +L N     P+  
Sbjct: 135 KWDLQPDQYEAIDQSYQQFAEANQWQMVKFSASTGAGLETLQN----LLINSLDPGPYYY 190

Query: 374 P 374
           P
Sbjct: 191 P 191


>gi|15611694|ref|NP_223345.1| ferrous IRON transport protein B [Helicobacter pylori J99]
 gi|76364189|sp|Q9ZLF3|FEOB_HELPJ RecName: Full=Ferrous iron transport protein B
 gi|4155172|gb|AAD06199.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL+   +  V +  G T D + + L  + + + I D  G    +
Sbjct: 6   VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKDHQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQYDLIL 86


>gi|23011756|ref|ZP_00052024.1| COG2262: GTPases [Magnetospirillum magnetotacticum MS-1]
          Length = 376

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 79/188 (42%), Gaps = 31/188 (16%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y IV L G++NAGKS+LFNAL K +V    D+   T D       L  G  V +SDT
Sbjct: 130 RVPYPIVALVGYTNAGKSTLFNALTKAEVK-AQDMLFATLDPTARATKLPHGETVILSDT 188

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNID 321
            G             + T  +V  AD++L +++++               +E+    + D
Sbjct: 189 VGFISDLPTSLIAAFRATLEDVIEADILLHVRDVSHGDTQAQAEDVEAVLRELGIKADAD 248

Query: 322 FIF-IGTKSDLYS--------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            I  +  K+DL                  T     L+S+ TGEGL  L  +I+S ++   
Sbjct: 249 RIIEVWNKADLLDEGERTRLLNLSAAHRGTGPAPILVSALTGEGLPALAERIESQVARAR 308

Query: 367 KKLPFSIP 374
                S+P
Sbjct: 309 STFAVSLP 316


>gi|329114469|ref|ZP_08243231.1| GTP-binding protein Era-like protein [Acetobacter pomorum DM001]
 gi|326696545|gb|EGE48224.1| GTP-binding protein Era-like protein [Acetobacter pomorum DM001]
          Length = 300

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 24/171 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKIS 272
           +  R G+  ++ G  NAGKS+L N +A   ++IV+    TTR  VL I +     ++ + 
Sbjct: 4   DTTRCGFAALV-GAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRVLGILMRGHSQILLV- 61

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------------KKEISF 316
           DT GI      +++  +   +   E+AD+ LLL +  S                K+++  
Sbjct: 62  DTPGIFRPRRKLDRAMVAAAWTGAEDADITLLLVDARSGLTEAVQTIIERLAETKRKVWL 121

Query: 317 PKN-IDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELINKIKSIL 362
             N  D +       L ++ TE    E+  ++S+ TG G+E+L++K+ + L
Sbjct: 122 VLNKTDLVPATALLPLTASITEKLPVEHVFMVSARTGNGVEDLLDKLAASL 172


>gi|209964795|ref|YP_002297710.1| GTP-binding protein Era [Rhodospirillum centenum SW]
 gi|209958261|gb|ACI98897.1| GTP-binding protein Era [Rhodospirillum centenum SW]
          Length = 340

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 33/186 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R G+ I ++G  NAGKS+L NAL    V+IV+    TTR  VL I +  +  L+ + DT 
Sbjct: 46  RCGF-IALVGAPNAGKSTLLNALVGAKVSIVSPKVQTTRSRVLGIGITGDSQLLFV-DTP 103

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------------------- 312
           GI +    +++  +   +    +ADLI++L + ++ +                       
Sbjct: 104 GIFKPKRRLDRAMVAAAWQGATDADLIVMLYDASNDRLDEDTLGIIERLKEAGRTAILAL 163

Query: 313 -EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            ++   K    + +  + D +  +T  +  +IS+ TG+GL +L     + L+ +  + P+
Sbjct: 164 NKVDLIKREKLLKLAAELDSHGIFTRTF--MISALTGDGLADL----SAFLAAEVPEGPW 217

Query: 372 SIPSHK 377
             P+ +
Sbjct: 218 LYPADQ 223


>gi|163839487|ref|YP_001623892.1| GTP-binding protein [Renibacterium salmoninarum ATCC 33209]
 gi|162952963|gb|ABY22478.1| GTP-binding protein [Renibacterium salmoninarum ATCC 33209]
          Length = 526

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 41/182 (22%)

Query: 223 VILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            I G++NAGKSS+ N L    V    A+   +  T R   T D    G    ++DT G  
Sbjct: 308 AIAGYTNAGKSSILNRLTHAGVLVQNALFATLDPTVRKAATPD----GIGFTLADTVGFV 363

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKN 319
            +      E  + T  EV +ADLIL                   +L E++++K       
Sbjct: 364 RSLPTQLVEAFRSTLEEVADADLILHVVDVSHPDPEGQIAAVREVLSEVDARK------- 416

Query: 320 IDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           I  I +  K+D          T  E    L+S+ TG+G++EL+  I   +     +L   
Sbjct: 417 IPEIIVLNKADAADPLVIQRLTQRETRSVLVSARTGQGIDELLELISQAIPRPGVELELM 476

Query: 373 IP 374
           IP
Sbjct: 477 IP 478


>gi|311739636|ref|ZP_07713471.1| GTP-binding protein HflX [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305452|gb|EFQ81520.1| GTP-binding protein HflX [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 497

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 36/206 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +I I G++NAGKSSL NA+    V    A+   +  TTR     D    G  V  +DT G
Sbjct: 270 QIAIAGYTNAGKSSLINAMTGAGVLVEDALFATLDPTTRRATLAD----GRQVVFTDTVG 325

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF----------P 317
                     E  K T  EV  AD++L          LK+I +  ++ +          P
Sbjct: 326 FVRHLPTQLVEAFKSTLEEVLAADIMLHVVDGSDPFPLKQIEAVNQVIYDIVSETGEQAP 385

Query: 318 KNIDFIFIGTKSD--LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPF 371
             I  I    ++D  + +      DH     +S+ TGEG++EL  +++  L+++   +  
Sbjct: 386 PEIIVINKIDQADPLVLAELRHVLDHEDVVYVSARTGEGIDELTARVELFLNSRDSHVKL 445

Query: 372 SIPSHKRHL---YHLSQTVRYLEMAS 394
            +P  +  +    H   TVR+ E  +
Sbjct: 446 QVPFTRGDVVARVHAEGTVRHEEYTA 471


>gi|223986425|ref|ZP_03636430.1| hypothetical protein HOLDEFILI_03742 [Holdemania filiformis DSM
           12042]
 gi|223961621|gb|EEF66128.1| hypothetical protein HOLDEFILI_03742 [Holdemania filiformis DSM
           12042]
          Length = 281

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 14/124 (11%)

Query: 155 SSLYGQWIDKLTHIRSF-IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213
           + +  QWI+KL    +  I ADL           + KEV+      K  I   I +G   
Sbjct: 65  AEITQQWIEKLKDDTTLVIAADLLHDSFVPKLTQACKEVM------KEKIERMIRRGIRP 118

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
             IR     +++G  N GKS++ N LA K +A   D PG TR +  + L+ +   V++ D
Sbjct: 119 RAIRA----MVVGVPNVGKSTMINRLAGKKIAQTADRPGVTRSLQWVKLNKD---VELLD 171

Query: 274 TAGI 277
           T G+
Sbjct: 172 TPGV 175


>gi|218441386|ref|YP_002379715.1| GTP-binding protein Era [Cyanothece sp. PCC 7424]
 gi|218174114|gb|ACK72847.1| GTP-binding protein Era [Cyanothece sp. PCC 7424]
          Length = 318

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 215 IIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           I   G+K   + I+G  N GKS+L N L  + +AI + +  TTR+ L   L      +  
Sbjct: 18  IAPEGFKSGFVAIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLQGILTTSEAQIIF 77

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            DT GI +    + K  +K   + +   DL+LL+ +
Sbjct: 78  VDTPGIHKPHHELGKVLVKNAQMAINAVDLVLLVAD 113


>gi|212633665|ref|YP_002310190.1| GTP-binding protein HflX [Shewanella piezotolerans WP3]
 gi|212555149|gb|ACJ27603.1| GTP-binding protein HflX [Shewanella piezotolerans WP3]
          Length = 431

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 100/228 (43%), Gaps = 36/228 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG-IRE 279
           + ++G++NAGKS+LFNAL   DV     +  T    L   L+L +G++V ++DT G IR 
Sbjct: 200 VSLVGYTNAGKSTLFNALTASDVYAADQLFATLDPTLR-KLELPDGHIV-LADTVGFIRH 257

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDF-----IFIG 326
              D+V     K T  E   ADL+L + +        N ++  S  K ID      + I 
Sbjct: 258 LPHDLV--AAFKATLQETRQADLLLHVVDSADENMADNFEQVQSVLKEIDADEIPQLIIC 315

Query: 327 TKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            K DL        D+          +S+   +GLE +   I  ++    K+L   IP+  
Sbjct: 316 NKIDLLDEVKPRIDYDDEGKPIRVWVSAQQQKGLELVQEAINDLVGKAVKELALQIPASA 375

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419
            H  +L Q  +   +      D G  +I+  L      RL   SLG+I
Sbjct: 376 GH--YLGQFYKLDVIQQKEYDDLGNCMISVRLLEADWRRLVKQSLGEI 421


>gi|325928435|ref|ZP_08189626.1| cell division checkpoint GTPase YihA [Xanthomonas perforans 91-118]
 gi|119369279|sp|Q3BXK1|ENGB_XANC5 RecName: Full=Probable GTP-binding protein EngB
 gi|325541152|gb|EGD12703.1| cell division checkpoint GTPase YihA [Xanthomonas perforans 91-118]
          Length = 207

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            GY++   G SNAGKSS  NAL +++ +A V+  PG T+ ++   +  E YLV +
Sbjct: 24  GGYEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQIQPERYLVDL 78


>gi|313672984|ref|YP_004051095.1| ferrous iron transport protein b [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939740|gb|ADR18932.1| ferrous iron transport protein B [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 646

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +K++++G+ N GKS+LF  L+ K V+ V++ PGTT D+      + E + ++  DT G  
Sbjct: 7   FKVLLIGNPNVGKSALFYRLSGKYVS-VSNYPGTTVDITRGKTKVGEHHEIEFIDTPGFY 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
               I E+E + +  L  E  D++L
Sbjct: 66  NLMTITEEEKVTKKLLLEETPDVVL 90


>gi|148977011|ref|ZP_01813657.1| putative GTPase YlqF [Vibrionales bacterium SWAT-3]
 gi|145963671|gb|EDK28932.1| putative GTPase YlqF [Vibrionales bacterium SWAT-3]
          Length = 311

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 13/104 (12%)

Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           F +E+ V+      S KE +N I+ L   ++ H  + ++G+ IR     +I+G  N GKS
Sbjct: 75  FEKEQGVKAIAITTSVKEEVNHIMELVRKLAPH--REEIGKNIRT----MIMGIPNVGKS 128

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           ++ N LA + +A+  + P  TR    I+L   G +  +SDT GI
Sbjct: 129 TIINCLAGRTIAVTGNQPAVTRRQQRINLQ-NGVI--LSDTPGI 169


>gi|288906055|ref|YP_003431277.1| GTP-binding protein [Streptococcus gallolyticus UCN34]
 gi|306832095|ref|ZP_07465249.1| ribosome biogenesis GTPase YqeH [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325979020|ref|YP_004288736.1| GTP-binding protein engA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732781|emb|CBI14355.1| putative conserved GTP-binding protein [Streptococcus gallolyticus
           UCN34]
 gi|304425534|gb|EFM28652.1| ribosome biogenesis GTPase YqeH [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325178948|emb|CBZ48992.1| GTP-binding protein engA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 372

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R G  + ++G +N GKS+L NA+ K     KD+   +  PGTT D + I LD   Y 
Sbjct: 158 EKLRRGRDVYVVGVTNVGKSTLINAIIKEITGEKDIITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +    G K              LK I+ KKEI  PK 
Sbjct: 217 --IFDTPGIIHRHQMAHYLGDKN-------------LKYISPKKEIK-PKT 251


>gi|183597426|ref|ZP_02958919.1| hypothetical protein PROSTU_00690 [Providencia stuartii ATCC 25827]
 gi|183601093|ref|ZP_02962586.1| hypothetical protein PROSTU_04720 [Providencia stuartii ATCC 25827]
 gi|188019435|gb|EDU57475.1| hypothetical protein PROSTU_04720 [Providencia stuartii ATCC 25827]
 gi|188023258|gb|EDU61298.1| hypothetical protein PROSTU_00690 [Providencia stuartii ATCC 25827]
          Length = 290

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +L ++I     I ++G + AGKSSL NAL +  ++ V+D+ G TR      + +  + +
Sbjct: 24  NQLSQLINYSPTIGLMGKTGAGKSSLLNALFQSQLSPVSDVSGCTRQAQRFSMTMNNHTL 83

Query: 270 KISDTAGIRET 280
              D  G+ E+
Sbjct: 84  TFIDLPGVGES 94


>gi|21232826|ref|NP_638743.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66767103|ref|YP_241865.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|24418370|sp|Q8P5E4|ENGB_XANCP RecName: Full=Probable GTP-binding protein EngB
 gi|81306913|sp|Q4UYM8|ENGB_XANC8 RecName: Full=Probable GTP-binding protein EngB
 gi|21114651|gb|AAM42667.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66572435|gb|AAY47845.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 207

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            GY++   G SNAGKSS  NAL +++ +A V+  PG T+ ++   +  E YLV +
Sbjct: 24  GGYEVAFAGRSNAGKSSALNALTRQNSLARVSKTPGRTQQLVFFQIQPERYLVDL 78


>gi|306834207|ref|ZP_07467327.1| ribosome biogenesis GTPase YqeH [Streptococcus bovis ATCC 700338]
 gi|304423780|gb|EFM26926.1| ribosome biogenesis GTPase YqeH [Streptococcus bovis ATCC 700338]
          Length = 372

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R G  + ++G +N GKS+L NA+ K     KD+   +  PGTT D + I LD   Y 
Sbjct: 158 EKLRRGRDVYVVGVTNVGKSTLINAIIKEITGEKDIITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +    G K              LK I+ KKEI  PK 
Sbjct: 217 --IFDTPGIIHRHQMAHYLGDKN-------------LKYISPKKEIK-PKT 251


>gi|300857358|ref|YP_003782342.1| small GTP-binding protein domain-containing protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300437473|gb|ADK17240.1| Small GTP-binding protein domain protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 3/58 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGI 277
           I + G  NAGKSS+ NAL  +D+AIV+D+ GTT D +   +++   G  V I DTAG+
Sbjct: 14  IALFGKRNAGKSSIINALTGQDIAIVSDVRGTTTDPVYKSMEILPIGPCV-IIDTAGL 70


>gi|326791151|ref|YP_004308972.1| GTP-binding protein Era [Clostridium lentocellum DSM 5427]
 gi|326541915|gb|ADZ83774.1| GTP-binding protein Era [Clostridium lentocellum DSM 5427]
          Length = 302

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + I+G  N GKS+L N L  + VAI+++ P TTR+ +   L  + Y    
Sbjct: 1   MKEPFKSGF-VSIIGRPNVGKSTLMNKLIGEKVAIMSNKPQTTRNRIQTVLTTKHYQAVF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            DT GI    + + +  +K     +   D I  L E
Sbjct: 60  IDTPGIHTPKNKLGEFMVKSAMTTLNEVDAIFYLVE 95


>gi|242242875|ref|ZP_04797320.1| GTP-binding protein [Staphylococcus epidermidis W23144]
 gi|242233650|gb|EES35962.1| GTP-binding protein [Staphylococcus epidermidis W23144]
          Length = 366

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 19/149 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RN   + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD + ++  
Sbjct: 157 VRNKDDVYIVGTTNVGKSTLINKLIEQSVGEKDVVTTSRFPGTTLDMIDIPLDEKSFMF- 215

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFI----- 323
             DT GI ++  +          + +   ++   + ++N K+ + F     ID++     
Sbjct: 216 --DTPGIIQSHQMTNYVSENELKIIIPKNEVKQRVYQLNEKQTLFFGGLARIDYVSGGKR 273

Query: 324 ----FIGTKSDLYSTYTEEYDHLISSFTG 348
               F     +++ T TE+ + L  S  G
Sbjct: 274 PLVCFFSNDLNIHRTKTEKANDLWKSQLG 302


>gi|84625320|ref|YP_452692.1| GTPase EngB [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|166710592|ref|ZP_02241799.1| GTPase EngB [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|188575232|ref|YP_001912161.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|119369280|sp|Q2NZ59|ENGB_XANOM RecName: Full=Probable GTP-binding protein EngB
 gi|119369281|sp|Q5GVY6|ENGB_XANOR RecName: Full=Probable GTP-binding protein EngB
 gi|238689455|sp|B2SNS8|ENGB_XANOP RecName: Full=Probable GTP-binding protein EngB
 gi|84369260|dbj|BAE70418.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188519684|gb|ACD57629.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 207

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            GY++   G SNAGKSS  NAL +++ +A V+  PG T+ ++   +  E YLV +
Sbjct: 24  GGYEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQIQPERYLVDL 78


>gi|332885465|gb|EGK05714.1| ribosome biogenesis GTPase RsgA 1 [Dysgonomonas mossii DSM 22836]
          Length = 351

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 6/145 (4%)

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           +ADL+F E+E + N + K + + +  L   I    +  +L E I  G  +V +G S  GK
Sbjct: 149 KADLEF-EKESISN-AIKHIGDRMPVLFTSIHQPQTIIQLREFIAEGETVVFVGSSGVGK 206

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS----DTAGIRETDDIVEKEG 288
           SSL NAL ++ + + +DI  +T          E  L+K S    DT G+RE    +E   
Sbjct: 207 SSLVNALCEESILLTSDISSSTGKGRHTSTRREMVLMKGSGVLIDTPGVREFGLAIENPD 266

Query: 289 IKRTFLEVENADLILLLKEINSKKE 313
                LE+ + + +   K+     E
Sbjct: 267 SLSGMLEISDYEGLCRFKDCEHTNE 291


>gi|325292415|ref|YP_004278279.1| GTP-binding protein Era [Agrobacterium sp. H13-3]
 gi|325060268|gb|ADY63959.1| GTP-binding protein Era [Agrobacterium sp. H13-3]
          Length = 316

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 30/181 (16%)

Query: 203 ISSHISQGKLGEII----RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ H +    GE I    R+G+ + ++G +NAGKS+L N L    V+IV+    TTR V+
Sbjct: 4   MTDHENPAVAGEDIALPTRSGF-VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAVM 62

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL-------------- 304
                 +   +   DT GI +    +++  +   +   ++ADLILL              
Sbjct: 63  RGIAIHKNAQIVFMDTPGIFKPRRRLDRAMVTSAWGGAKDADLILLLIDSERGLKGDAEA 122

Query: 305 ----LKEINSKK-----EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
               LK++  KK     +I   K  D + +   ++ + T+   +  +IS+  G G E+L+
Sbjct: 123 ILEGLKDVPQKKILCLNKIDQVKREDLLKLAAAANEHVTFDRTF--MISATNGSGCEDLM 180

Query: 356 N 356
           +
Sbjct: 181 D 181


>gi|317014104|gb|ADU81540.1| ferrous iron transport protein B [Helicobacter pylori Gambia94/24]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL+   +  V +  G T D + + L  + + + I D  G    +
Sbjct: 6   VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLVHKEHQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQYDLIL 86


>gi|260575069|ref|ZP_05843070.1| GTP-binding proten HflX [Rhodobacter sp. SW2]
 gi|259022691|gb|EEW25986.1| GTP-binding proten HflX [Rhodobacter sp. SW2]
          Length = 412

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 31/188 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +   +V +  D+   T D     L L  G  + ISDT G    
Sbjct: 194 VALVGYTNAGKSTLFNRMTGAEV-LAKDMLFATLDPTMRGLVLPSGRKIIISDTVGF--I 250

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338
            D+  +     + T  EV  ADLIL +++I+  +      ++  I         +   E 
Sbjct: 251 SDLPTQLVAAFRATLEEVLEADLILHVRDISHPESAEQAADVAKILAALGVKAATPQIEI 310

Query: 339 YDHL-----------------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP- 374
           ++ L                       +S+ TGEGL EL+  I          L  ++P 
Sbjct: 311 WNKLDLVQGAMRDGLVQQAQGRDGVMALSALTGEGLPELLEAISRAFDEAKSDLRLTLPF 370

Query: 375 -SHKRHLY 381
              +RH +
Sbjct: 371 SEGRRHAW 378


>gi|254779329|ref|YP_003057434.1| Ferrous iron transport protein B; putative membrane protein
           [Helicobacter pylori B38]
 gi|254001240|emb|CAX29215.1| Ferrous iron transport protein B; putative membrane protein
           [Helicobacter pylori B38]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL NAL+   +  V +  G T D + + L  + + + I D  G    +
Sbjct: 6   IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQYDLIL 86


>gi|218438310|ref|YP_002376639.1| small GTP-binding protein [Cyanothece sp. PCC 7424]
 gi|218171038|gb|ACK69771.1| small GTP-binding protein [Cyanothece sp. PCC 7424]
          Length = 529

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 24/182 (13%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           + +Q+  S+E L   L    +I +++++G+L        ++V+ G  +AGK+SL NAL  
Sbjct: 106 QQIQDKVSQEAL---LSRSQEIEANLARGEL--------RVVVFGTGSAGKTSLVNALIG 154

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDI-VEKEGIKRTFLEVEN 298
           + V  V    GTT+   T  L L+G    + I+DT GI E      E+E + R       
Sbjct: 155 EMVGNVEATMGTTQIGQTYRLKLKGITREILITDTPGILEAGIAGTEREKLARQL--ATE 212

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           ADL+L + + + ++    P  +  + IG +S L    T+ Y       T E  E ++N++
Sbjct: 213 ADLLLFVIDNDLRQSEYDPLRM-LVEIGKRSLLIFNKTDLY-------TDEDQEVILNQL 264

Query: 359 KS 360
           K 
Sbjct: 265 KQ 266


>gi|229822006|ref|YP_002883532.1| GTPase EngC [Beutenbergia cavernae DSM 12333]
 gi|229567919|gb|ACQ81770.1| GTPase EngC [Beutenbergia cavernae DSM 12333]
          Length = 352

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
           W    T +    +ADL     + V +  +  +  D+L +    ++ +   +L E I  G 
Sbjct: 135 WRSGATPLVVLTKADLVDDAADWVADVGAVALGVDVLAVS--ATTGLGMSELRERIAPGT 192

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID----LDLEGYLVKISDTAG 276
            +V++G S AGKS+L NALA  +V    D  G  +   T      + L G    I DT G
Sbjct: 193 TLVVVGPSGAGKSTLVNALAGTEVMATGDRRGDGKGRHTTSHRELVPLPGGATLI-DTPG 251

Query: 277 IRETDDIVEKEGIKRTFLEVEN 298
           +R    +   + + +TF +VE+
Sbjct: 252 LRAVGLVATPDAVAKTFSDVED 273


>gi|295111471|emb|CBL28221.1| GTPase of unknown function. [Synergistetes bacterium SGP1]
          Length = 81

 Score = 45.1 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 30/53 (56%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I+G  N GKSSLFN L  +  +IV D PG TRD +  + +  G    + DT G
Sbjct: 6   IIGRPNVGKSSLFNRLIGRRESIVDDAPGVTRDRIYGEAEWRGRSFYVIDTGG 58


>gi|219670281|ref|YP_002460716.1| GTP-binding protein Era [Desulfitobacterium hafniense DCB-2]
 gi|219540541|gb|ACL22280.1| GTP-binding protein Era [Desulfitobacterium hafniense DCB-2]
          Length = 303

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 29/175 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L  + + I++D P TTR+ +   L  E   V   DT G
Sbjct: 11  RSGF-VTVVGRPNAGKSTLLNQLLGQKILIMSDKPQTTRNKIHCILTEERGQVVFLDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFP-----KN 319
           I +    + +  +      +   DLIL + +  ++            K +  P       
Sbjct: 70  IHKPKHKLGEFMVDSALESLREVDLILYMVDTTAEFGAGEEYILENLKHVKTPCILLLNK 129

Query: 320 IDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLP 370
           ID I       L   Y+   D L    IS+ TGE  +EL+  I       FK++P
Sbjct: 130 IDLIEKDKLLKLIKDYSALKDFLAILPISAKTGENKDELLKLI-------FKEMP 177


>gi|330507073|ref|YP_004383501.1| GTP-binding protein HflX [Methanosaeta concilii GP-6]
 gi|328927881|gb|AEB67683.1| GTP-binding protein HflX [Methanosaeta concilii GP-6]
          Length = 415

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G++NAGKS+L N L    V    D P TT    T  L++ G    ++DT G    D
Sbjct: 190 IALAGYTNAGKSTLLNTLTGS-VVNAQDQPFTTLSPTTRALEINGRRTMLTDTVGF--ID 246

Query: 282 DIVE--KEGIKRTFLEVENADLILLLKEINSKKEI 314
           D+     +  + T  E+  ADL+LL+ +++   E+
Sbjct: 247 DLPHFLIKAFQSTLSEIAQADLVLLVADLSDPLEL 281


>gi|294794217|ref|ZP_06759353.1| GTP-binding protein [Veillonella sp. 3_1_44]
 gi|294454547|gb|EFG22920.1| GTP-binding protein [Veillonella sp. 3_1_44]
          Length = 428

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I   G  NAGKS+L N L  + V++V+D+ GTT D ++  ++ L    V I+DTAG
Sbjct: 8   NRIHIGFFGRCNAGKSTLINMLTGQPVSLVSDVAGTTTDPVSKAMEILPLGPVVITDTAG 67

Query: 277 IRETDDI 283
           I +T ++
Sbjct: 68  IDDTTEL 74


>gi|268679661|ref|YP_003304092.1| GTP-binding protein Era [Sulfurospirillum deleyianum DSM 6946]
 gi|268617692|gb|ACZ12057.1| GTP-binding protein Era [Sulfurospirillum deleyianum DSM 6946]
          Length = 296

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + GY + ++G  NAGKSSL N L  + +A+V+     TR  L I    E   +   DT G
Sbjct: 6   KTGY-VAVIGRPNAGKSSLLNWLIGEKLALVSHKANATRKRLNIIAMHENTQIIFIDTPG 64

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I E + ++ +  ++     + + DLIL L
Sbjct: 65  IHEQERLLNQFMLEEAMKAMGDCDLILFL 93


>gi|78499699|gb|ABB45853.1| hypothetical protein [Eutrema halophilum]
          Length = 429

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 60/251 (23%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + +LG  N GKS+L N +  + ++IVTD P TTR  +        Y + + DT G
Sbjct: 130 RSGY-VAVLGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTPG 188

Query: 277 IRETD----DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------- 324
           + E      D +  + ++   +   NAD +++L +         P NI+ +         
Sbjct: 189 VIEKKMHRLDTMMMKNVRDAAI---NADCVVVLVD-----ACKMPANIEEVLKEGLGNLE 240

Query: 325 -------------------IGTKSDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILS 363
                              I  K + Y  +T + D +I  S+  G G+E++   I S   
Sbjct: 241 KRPPMLLVMNKKDLIKPGEIAKKLEWYEKFT-DVDEVIPVSAKYGHGVEDVKEWILS--- 296

Query: 364 NKFKKLPFSIPSHKRHL-------YHLSQTVR---YLEMASLNEKDCGLDIIAENLRLAS 413
               KLPF  P + + +       + +++ VR   +++  +     C +++++   R A+
Sbjct: 297 ----KLPFGPPYYPKDIVSEHPERFFVAEIVREKIFMQYRNEVPYACQVNVLSYKTRPAA 352

Query: 414 VSLGKITGCVD 424
               ++   VD
Sbjct: 353 KDFIQVEVVVD 363


>gi|73662763|ref|YP_301544.1| GTPase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495278|dbj|BAE18599.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVA----IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++ ++G++NAGKSS FNALAK+       +   +   TR +   D    G+ + ISDT 
Sbjct: 206 FQVALVGYTNAGKSSWFNALAKESTYEKKLLFATLDPKTRQIQIND----GFNLIISDTV 261

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303
           G  +          K T  E +NADL+L
Sbjct: 262 GFIQKLPTTLIAAFKSTLEEAKNADLLL 289


>gi|71408039|ref|XP_806448.1| small GTP-binding protein [Trypanosoma cruzi strain CL Brener]
 gi|70870198|gb|EAN84597.1| small GTP-binding protein, putative [Trypanosoma cruzi]
          Length = 571

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVA-----IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++ I+G  N+GKSSLFN L++         IV D  G TRD +     LEG    I DT 
Sbjct: 104 RVAIVGRMNSGKSSLFNLLSEDPTMPHRKNIVRDFDGITRDSVEGHAQLEGMHFTIIDTP 163

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           G      +V  + ++  F  VE AD  + +  ++
Sbjct: 164 G------MVNGKLVEEAFRTVETADAAIFVTSVD 191



 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I ++G +N+GKSSL N L   + +   D   +TRD + +    +G  VK+ DTAG+
Sbjct: 304 RIALVGRTNSGKSSLINRLVGFERSRAVDEKNSTRDPVELPCIYKGRKVKLIDTAGL 360


>gi|325916357|ref|ZP_08178632.1| cell division checkpoint GTPase YihA [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537405|gb|EGD09126.1| cell division checkpoint GTPase YihA [Xanthomonas vesicatoria ATCC
           35937]
          Length = 207

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            GY++   G SNAGKSS  NAL +++ +A V+  PG T+ ++   +  E YLV +
Sbjct: 24  GGYEVAFAGRSNAGKSSALNALTRQNSLARVSKTPGRTQQLVFFQIQPERYLVDL 78


>gi|208434603|ref|YP_002266269.1| iron (II) transport protein [Helicobacter pylori G27]
 gi|208432532|gb|ACI27403.1| iron (II) transport protein [Helicobacter pylori G27]
          Length = 644

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL NAL+   +  V +  G T D + + L  + + + I D  G    +
Sbjct: 8   IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 66

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 67  DFTTEEKVTKDFLEKGQYDLIL 88


>gi|188493826|ref|ZP_03001096.1| putative GTPase [Escherichia coli 53638]
 gi|188489025|gb|EDU64128.1| putative GTPase [Escherichia coli 53638]
          Length = 249

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           +G S AGKSSL NAL + +V  V+D+   TR+V    L+  G+ + I+D  G+ E+ D
Sbjct: 1   MGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRD 58


>gi|218558875|ref|YP_002391788.1| hypothetical protein ECS88_2091 [Escherichia coli S88]
 gi|218365644|emb|CAR03380.1| conserved hypothetical protein; putative GTP-binding domain
           [Escherichia coli S88]
          Length = 303

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           I+G S AGKSSL NAL + +V  V+D+    R+V    L+  G+ + I+D  G+ E+ D
Sbjct: 54  IMGKSGAGKSSLCNALFQGEVTPVSDVHAGPREVQRFRLNGHGHSMVITDLPGVGESRD 112


>gi|317009300|gb|ADU79880.1| ferrous iron transport protein B [Helicobacter pylori India7]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL NAL+   +  V +  G T D + + L  + + + I D  G    +
Sbjct: 6   IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQYDLIL 86


>gi|315453275|ref|YP_004073545.1| ferrous iron transport protein [Helicobacter felis ATCC 49179]
 gi|315132327|emb|CBY82955.1| ferrous iron transport protein [Helicobacter felis ATCC 49179]
          Length = 633

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NA++   +  V +  G T +   +        + I D  GI   +
Sbjct: 6   VALVGQPNVGKSSLINAISGAHLK-VGNFAGVTVEKTQVSTTYNNTKITIVDLPGIYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + R FLE E+ DLIL
Sbjct: 65  DFTIEEKVSRQFLENEHFDLIL 86


>gi|310828944|ref|YP_003961301.1| hypothetical protein ELI_3378 [Eubacterium limosum KIST612]
 gi|308740678|gb|ADO38338.1| hypothetical protein ELI_3378 [Eubacterium limosum KIST612]
          Length = 397

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 8/123 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  N+GKSSL NAL  + +A+V+D+ GTT D +   +++ G       DTAG
Sbjct: 10  NRLHIGIYGKRNSGKSSLINALTGQKIALVSDVAGTTADPVYKYMEIHGIGPCMFIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-KEINSKKEISF-----PKNIDFIFIGTKSD 330
             +  ++ E   + +T   ++  D+ L++  + ++++E ++      +N   I I  KSD
Sbjct: 70  FDDIGELGEMR-VGQTRKAMDKTDIALIVWGDTHTEEEYNWIDAFKKRNTPVIPIINKSD 128

Query: 331 LYS 333
           + +
Sbjct: 129 ILT 131


>gi|300867293|ref|ZP_07111952.1| ferrous iron transport protein B [Oscillatoria sp. PCC 6506]
 gi|300334698|emb|CBN57118.1| ferrous iron transport protein B [Oscillatoria sp. PCC 6506]
          Length = 597

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS+ FN +   + A + + PG T D++   + L     ++ D  GI + 
Sbjct: 3   QIAVVGMPNTGKSTFFNRITGAN-ARIGNWPGITVDLMVAKVQLGNEAAEMVDLPGIYDL 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
               E E + R FLE     L+L++
Sbjct: 62  HGFSEDEQVVRNFLENNPIHLVLMI 86


>gi|308182825|ref|YP_003926952.1| iron(II) transport protein (feoB) [Helicobacter pylori PeCan4]
 gi|308065010|gb|ADO06902.1| iron(II) transport protein (feoB) [Helicobacter pylori PeCan4]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL NAL+   +  V +  G T D + + L  + + + I D  G    +
Sbjct: 6   IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQYDLIL 86


>gi|298736383|ref|YP_003728909.1| ferrous iron transport protein B [Helicobacter pylori B8]
 gi|298355573|emb|CBI66445.1| ferrous iron transport protein B [Helicobacter pylori B8]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL NAL+   +  V +  G T D + + L  + + + I D  G    +
Sbjct: 6   IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQYDLIL 86


>gi|307329031|ref|ZP_07608199.1| ribosome small subunit-dependent GTPase A [Streptomyces
           violaceusniger Tu 4113]
 gi|306885393|gb|EFN16411.1| ribosome small subunit-dependent GTPase A [Streptomyces
           violaceusniger Tu 4113]
          Length = 369

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 17/106 (16%)

Query: 203 ISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNAL---AKKDVAIVTDIPG----- 252
           +SS   +G  +LG ++  G   V+LG S AGKS+L NAL   A +DV  + D  G     
Sbjct: 185 VSSATGEGLEELGALLAPGTS-VLLGQSGAGKSTLANALVGAAVQDVHAIRDSDGKGRHT 243

Query: 253 -TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            TTRD+L   L   G L+   DT G+R       + G+ R F E+E
Sbjct: 244 TTTRDLLP--LPSGGVLI---DTPGLRGVGMWDAEGGVARAFAEIE 284


>gi|255533658|ref|YP_003094030.1| GTP-binding protein Era [Pedobacter heparinus DSM 2366]
 gi|255346642|gb|ACU05968.1| GTP-binding protein Era [Pedobacter heparinus DSM 2366]
          Length = 295

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 50/92 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + ++I+T    TTR  +   ++ E Y +  SDT GI +  
Sbjct: 8   VSIIGKPNVGKSTLMNALVGEKLSIITPKAQTTRHRILGIVNEESYQIVFSDTPGIIKPL 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
             ++   +      + +ADLIL + +IN + +
Sbjct: 68  YGLQDSMMNSVKGALTDADLILFVTDINEQHD 99


>gi|71662850|ref|XP_818425.1| small GTP-binding protein [Trypanosoma cruzi strain CL Brener]
 gi|70883677|gb|EAN96574.1| small GTP-binding protein, putative [Trypanosoma cruzi]
          Length = 571

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVA-----IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++ I+G  N+GKSSLFN L++         IV D  G TRD +     LEG    I DT 
Sbjct: 104 RVAIVGRMNSGKSSLFNLLSEDPTMPNRKNIVRDFDGITRDSVEGHAQLEGMHFTIIDTP 163

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           G      +V  + ++  F  VE AD  + +  ++
Sbjct: 164 G------MVNGKLVEEAFRTVETADAAIFVTSVD 191



 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I ++G +N+GKSSL N L   + +   D   +TRD + +    +G  VK+ DTAG+
Sbjct: 304 RIALVGRTNSGKSSLINRLVGFERSRAVDEKNSTRDPVELSCIYKGRKVKLIDTAGL 360


>gi|325681534|ref|ZP_08161059.1| ribosome biogenesis GTPase Era [Ruminococcus albus 8]
 gi|324106801|gb|EGC01092.1| ribosome biogenesis GTPase Era [Ruminococcus albus 8]
          Length = 298

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G +NAGKSSL NAL  + +A V+D P TTR  +T  L          DT G+ +  
Sbjct: 7   VTIAGRANAGKSSLLNALVGEKIAAVSDKPQTTRTKITGVLTKGETQFVFMDTPGMHKAK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
           + + +  +      +   D+I+L+ +   K
Sbjct: 67  NKLSEHMVNTVNETIAGVDMIILMCDCTKK 96


>gi|256810043|ref|YP_003127412.1| small GTP-binding protein [Methanocaldococcus fervens AG86]
 gi|256793243|gb|ACV23912.1| small GTP-binding protein [Methanocaldococcus fervens AG86]
          Length = 185

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 26/104 (25%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS------- 272
           +KI I+G  NAGKSS+ NAL  K V++V+++ GTT+      + ++ Y  K+        
Sbjct: 6   FKIAIIGPENAGKSSIMNALFGKYVSLVSEVGGTTK------MPIKKYWGKLKIGRVKEE 59

Query: 273 ---------DTAGIRETDD----IVEKEGIKRTFLEVENADLIL 303
                    D  G+  T D    I+  + +++T+ E+++AD+I+
Sbjct: 60  PEFVNLVFVDLGGLYTTTDKQSPIMTPKVLEKTYEEIKDADMII 103


>gi|86749994|ref|YP_486490.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris HaA2]
 gi|86573022|gb|ABD07579.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris HaA2]
          Length = 457

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 30/186 (16%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y++V L G++NAGKS+LFN L + DV    D+   T D     L L  G    +SDT
Sbjct: 221 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRALTLPHGGKAMLSDT 279

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSD-- 330
            G             + T  EV  ADLIL +++I+ +   +  +++D +   +G ++D  
Sbjct: 280 VGFISNLPTQLVAAFRATLEEVLEADLILHVRDISHEDAEAQERDVDAVLRQLGVEADGG 339

Query: 331 ----------------------LYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
                                 + +  +E+    ++S+ +GEG++EL+  I+  L+    
Sbjct: 340 RILEIWNKIDRFEPEQREELRNIAARRSEDRPCFMVSAVSGEGVDELLLAIEQRLAAWRS 399

Query: 368 KLPFSI 373
            L  +I
Sbjct: 400 VLDLTI 405


>gi|15645310|ref|NP_207481.1| iron(II) transport protein (feoB) [Helicobacter pylori 26695]
 gi|76364190|sp|O25396|FEOB_HELPY RecName: Full=Ferrous iron transport protein B
 gi|2313813|gb|AAD07741.1| iron(II) transport protein (feoB) [Helicobacter pylori 26695]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL NAL+   +  V +  G T D + + L  + + + I D  G    +
Sbjct: 6   IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQYDLIL 86


>gi|157363889|ref|YP_001470656.1| small GTP-binding protein [Thermotoga lettingae TMO]
 gi|157314493|gb|ABV33592.1| small GTP-binding protein [Thermotoga lettingae TMO]
          Length = 403

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 22/169 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           + I G  N GKSS  NA+  ++V+IV+DI GTT D +  TI+L+  G +  I DT G  +
Sbjct: 11  VAIAGRRNVGKSSFLNAIIGQNVSIVSDIAGTTTDPVYKTIELNPVGPVTFI-DTPGFDD 69

Query: 280 TDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKE---ISFPK--NIDFIFIGTKSD--- 330
           T ++  +  I+R    +  AD  ILL+  + ++ E   +S  +   I F+ +  K D   
Sbjct: 70  TGEL-GRLRIERARKVLYRADCGILLVDSLPTRYEDDIVSLFREMEIPFLIVVNKEDLLK 128

Query: 331 -----LYSTYTEEYDHL---ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                L   Y + Y      +SS   +G E +  KI  IL +   ++PF
Sbjct: 129 EKVDELLGVYQQRYGVKTISVSSKLIKGFELIGRKINEILPDD-DEVPF 176


>gi|317012498|gb|ADU83106.1| iron(II) transport protein [Helicobacter pylori Lithuania75]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL NAL+   +  V +  G T D + + L  + + + I D  G    +
Sbjct: 6   IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQYDLIL 86


>gi|308184474|ref|YP_003928607.1| iron(II) transport protein (feoB) [Helicobacter pylori SJM180]
 gi|308060394|gb|ADO02290.1| iron(II) transport protein (feoB) [Helicobacter pylori SJM180]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL NAL+   +  V +  G T D + + L  + + + I D  G    +
Sbjct: 6   IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQYDLIL 86


>gi|206891087|ref|YP_002248799.1| ferrous iron transport protein B [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206743025|gb|ACI22082.1| ferrous iron transport protein B [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 732

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G+ N+GKS+L NA+A   + I  + PG T +  T  L ++  +V + D  G     
Sbjct: 6   VAVTGNPNSGKSTLINAIAGISLQI-GNWPGVTVEKKTATLKIDELMVNLVDLPGTYSLS 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
              ++E I R FL  E  DLI+
Sbjct: 65  PYTQEEVIARDFLVQEKPDLII 86


>gi|154247805|ref|YP_001418763.1| GTP-binding protein Era [Xanthobacter autotrophicus Py2]
 gi|154161890|gb|ABS69106.1| GTP-binding protein Era [Xanthobacter autotrophicus Py2]
          Length = 385

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 28/162 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275
           R G+ + +LG  NAGKS+L N L    V+IV+    TTR ++  I LD    LV + DT 
Sbjct: 90  RCGF-VALLGAPNAGKSTLTNQLVGTKVSIVSHKVQTTRAIVRGIALDGAAQLVLV-DTP 147

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------------EISFPK--- 318
           GI      +E+  +   +    +AD+I LL  +++K+              +I  P+   
Sbjct: 148 GIFSPKRRLERAMVSSAWTHAADADVIALL--VDAKRGLDEDIEALLAPLSQIHKPRALI 205

Query: 319 --NIDFIFIGTKSDLYSTYTEE--YDH--LISSFTGEGLEEL 354
              ID I   T   L +   E+  +D   ++S+ TG+G+ ++
Sbjct: 206 LNKIDIIRRDTLLALAAQINEKLAFDRVFMVSALTGDGVADV 247


>gi|317486347|ref|ZP_07945177.1| GTP-binding protein Era [Bilophila wadsworthia 3_1_6]
 gi|316922417|gb|EFV43673.1| GTP-binding protein Era [Bilophila wadsworthia 3_1_6]
          Length = 311

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L NAL  + VAIVT  P TTR+ +   L  +   V   DT G
Sbjct: 6   RCGW-VALMGPPNAGKSTLTNALVGQKVAIVTAKPQTTRNRIVGILTQKDAQVIFMDTPG 64

Query: 277 I 277
           +
Sbjct: 65  V 65


>gi|15903636|ref|NP_359186.1| GTP-binding protein YqeH [Streptococcus pneumoniae R6]
 gi|116516270|ref|YP_817012.1| GTP-binding protein YqeH [Streptococcus pneumoniae D39]
 gi|15459261|gb|AAL00397.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076846|gb|ABJ54566.1| GTP-binding protein [Streptococcus pneumoniae D39]
          Length = 368

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 45/174 (25%)

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
           SG++S    QW+ K  H       D+  +  ++   ++ KEV++ I              
Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KYAIKEVIDKI-------------- 157

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265
              E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD  
Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            Y   I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|289177355|gb|ADC84601.1| HflX [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 523

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 34/207 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I ++G++NAGKSSL N L       + A+   +    R   T D  L  Y+    DT G 
Sbjct: 293 IAVVGYTNAGKSSLTNRLTGSTELVENALFATLDTAVRRTQTRDGRLYAYV----DTVGF 348

Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKE----ISFPKNIDF 322
             R   ++V  E  K T  E+ +ADLI+ +          +I++  E    I   + +  
Sbjct: 349 VRRLPTNLV--EAFKSTLEEIADADLIVHVVDASHPDPFSQIDAVNEVLQTIDGVERLPV 406

Query: 323 IFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           I +  K+DL      E         H++SS TGEG++ L   ++S+L +    +   +P 
Sbjct: 407 ITVFNKADLIDDAKRERLHALAPDAHIVSSATGEGVDALRADVESMLVDPDVHVEALLPY 466

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGL 402
            +  L  L++   Y  + SL  +D G+
Sbjct: 467 TEGSL--LAKVREYGRLESLEYRDDGI 491


>gi|154505900|ref|ZP_02042638.1| hypothetical protein RUMGNA_03442 [Ruminococcus gnavus ATCC 29149]
 gi|153793918|gb|EDN76338.1| hypothetical protein RUMGNA_03442 [Ruminococcus gnavus ATCC 29149]
          Length = 299

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 39/184 (21%)

Query: 216 IRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           +R+ +K   + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   +   
Sbjct: 1   MRDDFKSGFVTLIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFV 60

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNI 320
           DT GI +  + + +  +      +   D++L L E            I   K +  P   
Sbjct: 61  DTPGIHKAKNKLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEKHIIEQLKRVKTP--- 117

Query: 321 DFIFIGTKSDLYS---------TYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFK 367
             I +  K D+            Y +EYD      +S+  G+  +EL+N I        K
Sbjct: 118 -VILVINKIDMVKREEVLLFIDAYRKEYDFAEIVPVSARNGDNTDELVNVI-------LK 169

Query: 368 KLPF 371
            LP+
Sbjct: 170 YLPY 173


>gi|118364850|ref|XP_001015646.1| small GTP-binding protein domain containing protein [Tetrahymena
           thermophila]
 gi|89297413|gb|EAR95401.1| small GTP-binding protein domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 677

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I ++G++NAGKS+L NAL KKDV    D    T    +    L  G    I DT G    
Sbjct: 395 IALIGYTNAGKSALMNALIKKDVVESKDNLFQTLSTTSRKFKLISGQQAIILDTIGF--I 452

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEI 308
            D+  +  +  + T +EVE+ADL+L +++I
Sbjct: 453 TDLPHELVDSFQSTLMEVEHADLVLHVRDI 482


>gi|297172549|gb|ADI23519.1| GTPase [uncultured Gemmatimonadales bacterium HF0770_41L09]
          Length = 317

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 1/98 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E+ R GY + ++G  NAGKS+L N L  + ++IVT    TT   +T  L +    +   D
Sbjct: 15  EVARTGY-VTLVGRPNAGKSTLLNQLVGEHLSIVTPKAQTTWQRVTGILSVGTDQIIFLD 73

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           T G+ E  D++++  +      +  AD+ +LL +  +K
Sbjct: 74  TPGLLEAKDMLQRAMLGAALEALAEADITILLIDSTTK 111


>gi|312973770|ref|ZP_07787942.1| uncharacterized protein yfjP [Escherichia coli 1827-70]
 gi|310332365|gb|EFP99600.1| uncharacterized protein yfjP [Escherichia coli 1827-70]
 gi|324017377|gb|EGB86596.1| hypothetical protein HMPREF9542_03971 [Escherichia coli MS 117-3]
          Length = 290

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           I+G S AGKSSL NAL + +V  V+D+    R+V    L+  G+ + I+D  G+ E+ D
Sbjct: 41  IMGKSGAGKSSLCNALFQGEVTPVSDVHAGPREVQRFRLNGHGHSMVITDLPGVGESRD 99


>gi|296109074|ref|YP_003616023.1| small GTP-binding protein [Methanocaldococcus infernus ME]
 gi|295433888|gb|ADG13059.1| small GTP-binding protein [Methanocaldococcus infernus ME]
          Length = 185

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 58/103 (56%), Gaps = 25/103 (24%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-------- 271
           +KI I+G  NAGKSS+ NAL  K +++V+++ GTT+      + ++ Y  KI        
Sbjct: 3   FKIAIIGPENAGKSSIMNALFGKYISLVSEVGGTTK------MPVKRYWGKIKVSRLKEN 56

Query: 272 --------SDTAGIRETDD---IVEKEGIKRTFLEVENADLIL 303
                   SD +G+   ++   ++ K+ ++ T+ E+E++D+I+
Sbjct: 57  PIFAEIMFSDLSGLYRGNNKEAVLSKKVLEETYKEIESSDMII 99


>gi|193216878|ref|YP_002000120.1| GTP-binding protein Era [Mycoplasma arthritidis 158L3-1]
 gi|193002201|gb|ACF07416.1| GTP-binding protein Era [Mycoplasma arthritidis 158L3-1]
          Length = 294

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L   ++AIV+    TTRD +    + + Y +   DT GI + +
Sbjct: 8   VALIGRPNTGKSTLMNHLISYELAIVSKHAQTTRDDIKGFYNDDEYQIIFIDTPGIHKGE 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
            ++ K   KR    +++ DL+L L   N
Sbjct: 68  SLLSKRLNKRAQDALKDVDLVLFLSPAN 95


>gi|125973281|ref|YP_001037191.1| GTP-binding protein YlqF [Clostridium thermocellum ATCC 27405]
 gi|256003761|ref|ZP_05428749.1| GTP-binding protein HSR1-related protein [Clostridium thermocellum
           DSM 2360]
 gi|281417484|ref|ZP_06248504.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
           thermocellum JW20]
 gi|125713506|gb|ABN51998.1| Ras superfamily GTP-binding protein YlqF [Clostridium thermocellum
           ATCC 27405]
 gi|255992322|gb|EEU02416.1| GTP-binding protein HSR1-related protein [Clostridium thermocellum
           DSM 2360]
 gi|281408886|gb|EFB39144.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
           thermocellum JW20]
 gi|316940487|gb|ADU74521.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
           thermocellum DSM 1313]
          Length = 291

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 9/88 (10%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           K+ + DI+  K+ I     +G++   IR     +I+G  N GKSSL N +A K  A+  D
Sbjct: 97  KDQMRDIM--KDRIERDRQRGRIFRPIRT----MIVGIPNVGKSSLINKIAGKKSAVTGD 150

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            PG TR+   I+++ E   +++ DT GI
Sbjct: 151 RPGVTRNKQWINVNNE---IQLMDTPGI 175


>gi|307153147|ref|YP_003888531.1| small GTP-binding protein [Cyanothece sp. PCC 7822]
 gi|306983375|gb|ADN15256.1| small GTP-binding protein [Cyanothece sp. PCC 7822]
          Length = 208

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N  +I ++G  N GKS LFNAL     A V++ PGTT +V      ++   V + DT 
Sbjct: 36  LTNIPQIALVGMPNVGKSVLFNALTGT-YATVSNYPGTTVEVSRGQTVIDDRQVNVIDTP 94

Query: 276 GIRETDDIVEKEGIKRTFLEVENADL 301
           G+     I E+E + R  L  E  +L
Sbjct: 95  GMYSLVPITEEERVARDLLLKERVNL 120


>gi|183602407|ref|ZP_02963773.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis HN019]
 gi|241191239|ref|YP_002968633.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196645|ref|YP_002970200.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218326|gb|EDT88971.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis HN019]
 gi|240249631|gb|ACS46571.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251199|gb|ACS48138.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295794232|gb|ADG33767.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis V9]
          Length = 515

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 34/207 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I ++G++NAGKSSL N L       + A+   +    R   T D  L  Y+    DT G 
Sbjct: 285 IAVVGYTNAGKSSLTNRLTGSTELVENALFATLDTAVRRTQTRDGRLYAYV----DTVGF 340

Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKE----ISFPKNIDF 322
             R   ++V  E  K T  E+ +ADLI+ +          +I++  E    I   + +  
Sbjct: 341 VRRLPTNLV--EAFKSTLEEIADADLIVHVVDASHPDPFSQIDAVNEVLQTIDGVERLPV 398

Query: 323 IFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           I +  K+DL      E         H++SS TGEG++ L   ++S+L +    +   +P 
Sbjct: 399 ITVFNKADLIDDAKRERLHALAPDAHIVSSATGEGVDALRADVESMLVDPDVHVEALLPY 458

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGL 402
            +  L  L++   Y  + SL  +D G+
Sbjct: 459 TEGSL--LAKVREYGRLESLEYRDDGI 483


>gi|110633964|ref|YP_674172.1| GTP-binding protein, HSR1-related [Mesorhizobium sp. BNC1]
 gi|110284948|gb|ABG63007.1| GTP-binding protein, HSR1-related protein [Chelativorans sp. BNC1]
          Length = 460

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 31/184 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + I+G++NAGKS+LFN L    V +  D+   T D     +    G +V +SDT G    
Sbjct: 232 VAIVGYTNAGKSTLFNRLTGASV-LAEDMLFATLDPTLRRVRFPHGTVVILSDTVGF--I 288

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYT 336
            D+        + T  EV  AD+IL L++I+     +  ++++ +   +G  +   +   
Sbjct: 289 SDLPPHLVAAFRATLEEVVEADVILHLRDISDPDTAAHARDVEQVLASLGVDTSDPARAV 348

Query: 337 EEYDHL-----------------------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           E ++ +                       IS+ TGEG+E+L+  ++  LS +  ++ F++
Sbjct: 349 EVWNKIDRLSEADRERLLRDDINKTAPIAISAITGEGIEDLMALVEERLSGEVSEVLFTL 408

Query: 374 PSHK 377
            S +
Sbjct: 409 SSEQ 412


>gi|297172559|gb|ADI23529.1| predicted GTPase [uncultured Gemmatimonadales bacterium
           HF0770_41L09]
          Length = 79

 Score = 44.7 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 375 SHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432
           + +RHL  L Q   +L+   A L     G +++AE LRLA  +L +ITG    + LL  I
Sbjct: 13  ARRRHLQALEQAAEHLQQGKAQLLGAWAG-ELLAEELRLAQQNLSEITGEFTSDDLLGRI 71

Query: 433 FSKFCIGK 440
           FS FCIGK
Sbjct: 72  FSSFCIGK 79


>gi|108563095|ref|YP_627411.1| iron(II) transport protein [Helicobacter pylori HPAG1]
 gi|107836868|gb|ABF84737.1| iron(II) transport protein [Helicobacter pylori HPAG1]
          Length = 644

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL NAL+   +  V +  G T D + + L  + + + I D  G    +
Sbjct: 8   IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 66

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 67  DFTTEEKVTKDFLEKGQYDLIL 88


>gi|298253511|ref|ZP_06977301.1| GTPase [Gardnerella vaginalis 5-1]
 gi|297532278|gb|EFH71166.1| GTPase [Gardnerella vaginalis 5-1]
          Length = 507

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 20/173 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G++NAGKSS+ N L      +   +  T    +      +G    + DT G     
Sbjct: 290 VAVVGYTNAGKSSIINRLTGSQELVENALFATLDTAVRRSQTQDGRSYTLVDTVGFVRRL 349

Query: 282 DIVEKEGIKRTFLEVENADLIL---------LLKEINSKKE----ISFPKNIDFIFIGTK 328
                E  K T  EV  AD+IL          + +IN+  E    IS   +I  I    K
Sbjct: 350 PTQLVEAFKSTLEEVGQADVILHVVDGSHPDPISQINAVNEVLANISGVGDIPQIMALNK 409

Query: 329 SDLYSTYTEE-----YDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           SD+ S    E     Y    ++S+F+GE L+ L N+++ +L +   ++  ++P
Sbjct: 410 SDMMSDAARERFSSLYPDAVIVSAFSGENLQILRNRLEELLPSPRVRVDVTLP 462


>gi|282883015|ref|ZP_06291617.1| small GTP-binding protein [Peptoniphilus lacrimalis 315-B]
 gi|281297153|gb|EFA89647.1| small GTP-binding protein [Peptoniphilus lacrimalis 315-B]
          Length = 390

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 2/89 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I I G  N+GKSSL N LA ++V+IV+D  GTT D +   ++ LE   V I DT G
Sbjct: 7   NRIHIGIFGKVNSGKSSLINLLAAREVSIVSDREGTTTDSVYKSMEFLELGPVTIMDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           + +    + K   +R   ++E AD+ ++L
Sbjct: 67  VCDK-SFLGKLREQRLERDIEKADIAIIL 94


>gi|291287434|ref|YP_003504250.1| GTP-binding protein Era [Denitrovibrio acetiphilus DSM 12809]
 gi|290884594|gb|ADD68294.1| GTP-binding protein Era [Denitrovibrio acetiphilus DSM 12809]
          Length = 295

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + G+ I I+G  N GKS+L NAL  + +AI +  P TTR  +   L  E + +   DT G
Sbjct: 5   KTGF-ISIMGRPNVGKSTLLNALMGEKIAITSSKPQTTRANIQGILTGEDFQLIFIDTPG 63

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
             +  D + K  +++    +E  D I +L
Sbjct: 64  YHKAKDSINKMMVQQAKESLEAVDAIYVL 92


>gi|225619274|ref|YP_002720500.1| GTP-binding protein HflX [Brachyspira hyodysenteriae WA1]
 gi|225214093|gb|ACN82827.1| GTP-binding protein HflX [Brachyspira hyodysenteriae WA1]
          Length = 370

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 10/105 (9%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT----TRDV-LTIDL 262
           S G+ G    N ++I I+G++NAGKS+LFN L K+ V +   +  T    TR + LT D 
Sbjct: 191 STGRKGR--ENTFRIAIVGYTNAGKSTLFNLLCKESVYVEDKLFATLDTHTRKLYLTDDT 248

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            +E   V ISDT G  +          K T  EV  ADL+L L +
Sbjct: 249 PVE---VIISDTVGFIDRLPHTLVASFKSTLSEVVEADLLLHLSD 290


>gi|172040767|ref|YP_001800481.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium
           urealyticum DSM 7109]
 gi|171852071|emb|CAQ05047.1| cytidylate kinase [Corynebacterium urealyticum DSM 7109]
          Length = 784

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++    ++ ++G  N GKSSL N ++ +  ++V ++ GTT D +   ++LE    +  DT
Sbjct: 518 VVSGPRRVALVGRPNVGKSSLLNKISGEQRSVVDNVAGTTVDPVDSIVELEERTWRFVDT 577

Query: 275 AGIRE 279
           AGIR+
Sbjct: 578 AGIRK 582



 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKS+L N    +  A+V D PG TRD ++   D  G    + DT G
Sbjct: 352 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGDWGGRRFWVQDTGG 406


>gi|225871191|ref|YP_002747138.1| GTP-binding protein [Streptococcus equi subsp. equi 4047]
 gi|225700595|emb|CAW95118.1| GTP-binding protein [Streptococcus equi subsp. equi 4047]
          Length = 372

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 22/184 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +R G  + ++G +N GKS+L NA+ +     KDV   +  PGTT D + I LD   +   
Sbjct: 160 LRQGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSF--- 216

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
           I DT GI     +         +L  +N   I   KEI  K     P+   F+    + D
Sbjct: 217 IFDTPGIIHRHQMAH-------YLSAKNLKFISPKKEIKPKTYQLNPEQTLFLGGLARFD 269

Query: 331 LYS----TYTEEYDH--LISSFTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHL 383
             S     +T  +D+  L+     EG +   +K    +L+   KK     P   RH + L
Sbjct: 270 FISGERQGFTAYFDNQLLLHRTKLEGADAFYDKQAGQLLTPPDKKELDDFPRLVRHEFLL 329

Query: 384 SQTV 387
            Q V
Sbjct: 330 DQKV 333


>gi|118579231|ref|YP_900481.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379]
 gi|118501941|gb|ABK98423.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379]
          Length = 728

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 5/153 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + + G+ N GKS+L NA+A   +  V + PG T +      +L+G  +++ D  G
Sbjct: 14  RRVLTVAVAGNPNVGKSTLINAIAGTRLQ-VGNWPGVTVEKKEALFELDGLKIRLVDLPG 72

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335
                   ++E I R FL  E  DLI+ ++   N ++ +     +  + +G    +    
Sbjct: 73  TYSLSPYTQEEIIARDFLVHEKPDLIVNVVDATNLERNLYL--TVQLLELGIPLVMALNM 130

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           ++E D       G+G+E+++  I+ I ++  ++
Sbjct: 131 SDEADAKGYRIDGDGIEQMMG-IRVIPTSATRR 162


>gi|313897353|ref|ZP_07830896.1| ribosome biogenesis GTPase Era [Clostridium sp. HGF2]
 gi|312957723|gb|EFR39348.1| ribosome biogenesis GTPase Era [Clostridium sp. HGF2]
          Length = 299

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I I+G  NAGKS+L NA+ ++ VAI T  P TTR+ ++  L  E       DT GI
Sbjct: 8   ISIIGRPNAGKSTLLNAILQEKVAITTPKPQTTRNNISGILTREDAQFVFVDTPGI 63


>gi|255658526|ref|ZP_05403935.1| GTP-binding protein [Mitsuokella multacida DSM 20544]
 gi|260849328|gb|EEX69335.1| GTP-binding protein [Mitsuokella multacida DSM 20544]
          Length = 409

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I + G  N+GKSSL NAL  + VA V+ +PGTT D +   +++ G   V   DTAG  ++
Sbjct: 16  IGLFGRRNSGKSSLVNALTGQHVATVSSVPGTTTDPVYKAMEIHGIGPVVFIDTAGFDDS 75

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
             +     ++RT    +  D+ L+L
Sbjct: 76  GSLGALR-VERTRDAAKETDIALVL 99


>gi|255656142|ref|ZP_05401551.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-23m63]
 gi|296450425|ref|ZP_06892181.1| GTP-binding protein [Clostridium difficile NAP08]
 gi|296879452|ref|ZP_06903446.1| GTP-binding protein [Clostridium difficile NAP07]
 gi|296260686|gb|EFH07525.1| GTP-binding protein [Clostridium difficile NAP08]
 gi|296429598|gb|EFH15451.1| GTP-binding protein [Clostridium difficile NAP07]
          Length = 402

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 22/161 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279
           I + G  NAGKSS+ NA+  +  AIV+DI GTT D +   +++   G  V I DTAG+ +
Sbjct: 14  IGLFGKRNAGKSSIINAITNQSAAIVSDIAGTTTDPVFRPMEILPIGPCVLI-DTAGLDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSDL 331
              + E   I ++   +E  D+ LL+ +     S++++S       KNI  I I  K D 
Sbjct: 73  VGKLGELR-ISKSLDVLEKTDIALLVVDCQIGISQEDLSLIEKFNDKNIPHILILNKIDT 131

Query: 332 YSTYTEEYDHL----------ISSFTGEGLEELINKIKSIL 362
               +E  +            +SS    G+E L N+I  +L
Sbjct: 132 IKNQSEILNLAKNKVKCPVVSVSSTDKIGIENLKNEIIRVL 172


>gi|225867895|ref|YP_002743843.1| GTP-binding protein [Streptococcus equi subsp. zooepidemicus]
 gi|225701171|emb|CAW98072.1| GTP-binding protein [Streptococcus equi subsp. zooepidemicus]
          Length = 372

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 22/184 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +R G  + ++G +N GKS+L NA+ +     KDV   +  PGTT D + I LD   +   
Sbjct: 160 LRQGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSF--- 216

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
           I DT GI     +         +L  +N   I   KEI  K     P+   F+    + D
Sbjct: 217 IFDTPGIIHRHQMAH-------YLSAKNLKFISPKKEIKPKTYQLNPEQTLFLGGLARFD 269

Query: 331 LYS----TYTEEYDH--LISSFTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHL 383
             S     +T  +D+  L+     EG +   +K    +L+   KK     P   RH + L
Sbjct: 270 FISGERQGFTAYFDNQLLLHRTKLEGADAFYDKQAGQLLTPPDKKELDDFPRLVRHEFLL 329

Query: 384 SQTV 387
            Q V
Sbjct: 330 DQKV 333


>gi|317010904|gb|ADU84651.1| iron(II) transport protein (feoB) [Helicobacter pylori
           SouthAfrica7]
          Length = 642

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL+   +  V +  G T D + + L  + + + I D  G    +
Sbjct: 6   VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKEHQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQYDLIL 86


>gi|316934207|ref|YP_004109189.1| GTP-binding proten HflX [Rhodopseudomonas palustris DX-1]
 gi|315601921|gb|ADU44456.1| GTP-binding proten HflX [Rhodopseudomonas palustris DX-1]
          Length = 456

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 30/186 (16%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y++V L G++NAGKS+LFN L + DV    D+   T D     + L  G    +SDT
Sbjct: 220 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRAIQLPHGGKAMLSDT 278

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---------- 324
            G             + T  EV  ADLIL +++I+ +   +   ++D +           
Sbjct: 279 VGFISNLPTQLVAAFRATLEEVLEADLILHVRDISHEDAEAQQSDVDNVLRQLGVDAASG 338

Query: 325 ----IGTKSDLYSTYTEE----------YDH---LISSFTGEGLEELINKIKSILSNKFK 367
               +  K D +     +           DH   L+S+ +GEG++EL+  I+  L+    
Sbjct: 339 RILEVWNKIDRFEPEQRDELKNIAARRPEDHPCLLVSAVSGEGVDELLLAIEQRLAATRT 398

Query: 368 KLPFSI 373
            L  S+
Sbjct: 399 VLDLSV 404


>gi|283769577|ref|ZP_06342473.1| GTP-binding protein Era [Bulleidia extructa W1219]
 gi|283103845|gb|EFC05231.1| GTP-binding protein Era [Bulleidia extructa W1219]
          Length = 297

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R+G+ + I G  NAGKS+L NAL  + VAIV++   TTR  +   L  E   +  +DT 
Sbjct: 1   MRSGF-VGIAGRPNAGKSTLINALVGEKVAIVSEKSQTTRSEIRGILSREDGQIIFTDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI +  D +     K  +  +++ D++ L+
Sbjct: 60  GIHKPLDRLGVRMNKEVYSVIQDVDILYLV 89


>gi|242373901|ref|ZP_04819475.1| GTP-binding protein [Staphylococcus epidermidis M23864:W1]
 gi|242348455|gb|EES40057.1| GTP-binding protein [Staphylococcus epidermidis M23864:W1]
          Length = 366

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 21/152 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           RN   + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++   
Sbjct: 158 RNNEDVYIVGTTNVGKSTLINKLIEISVGEKDVVTTSRFPGTTLDMIDIPLDETTFMY-- 215

Query: 272 SDTAGI------------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            DT GI            +E   I+ K+ IK+   ++ N    L    +     +S  K 
Sbjct: 216 -DTPGIIQEHQMTHYVSEKELKTIMPKKEIKQRVYQL-NEGQTLFFGGLARIDYVSGGKR 273

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
               F     +++ T TE+ + L  S  G  L
Sbjct: 274 PLICFFSNDLNIHRTKTEKANELWKSQLGSVL 305


>gi|283853446|ref|ZP_06370690.1| GTP-binding protein Era [Desulfovibrio sp. FW1012B]
 gi|283571166|gb|EFC19182.1| GTP-binding protein Era [Desulfovibrio sp. FW1012B]
          Length = 294

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 45/82 (54%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           +LG +NAGKS+L N +  + V+IV+  P TTR+ ++  L  EG      DT G+      
Sbjct: 1   MLGPTNAGKSTLLNRVIGQKVSIVSPKPQTTRNSISGILTEEGAQAVFLDTPGLHRQKRG 60

Query: 284 VEKEGIKRTFLEVENADLILLL 305
           +    ++  +  +  AD++L+L
Sbjct: 61  IAPLLLRSAYAALTRADVVLVL 82


>gi|210134893|ref|YP_002301332.1| iron(II) transport protein [Helicobacter pylori P12]
 gi|210132861|gb|ACJ07852.1| iron(II) transport protein [Helicobacter pylori P12]
          Length = 642

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSL NAL+   +  V +  G T D + + L  + + + I D  G    +
Sbjct: 6   IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQHDLIL 86


>gi|194246696|ref|YP_002004335.1| GTP-binding protein Era [Candidatus Phytoplasma mali]
 gi|193807053|emb|CAP18489.1| Glycyl-tRNA synthetase [Candidatus Phytoplasma mali]
          Length = 293

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGYLVKISDTAGIRET 280
           I ILG  N GKS+L N L K+ ++IV+D P  T   ++ +  D++  LV I DT G    
Sbjct: 8   ITILGRPNVGKSTLINVLVKQKISIVSDKPNVTINKIIGVCNDIDSQLVFI-DTPGFNNR 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
             ++ K   + +   +   D+IL L
Sbjct: 67  KFLLSKRMDESSLKSIYGVDVILFL 91


>gi|94497605|ref|ZP_01304174.1| GTP-binding protein Era [Sphingomonas sp. SKA58]
 gi|94423022|gb|EAT08054.1| GTP-binding protein Era [Sphingomonas sp. SKA58]
          Length = 302

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 29/176 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  NAGKS+L NAL  + VAI +    TTR  V+ + ++ +  +V + DT GI   
Sbjct: 13  VAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQIV-LVDTPGIFAP 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----------------INSKKEISFPKNIDF- 322
              +++  ++  +   + ADLI L+ +                   S+++      +D  
Sbjct: 72  KRRLDRAMVQAAWGGAQGADLIALVVDGKAGLGPKMEPIVEALVHRSERKWLVLNKVDIA 131

Query: 323 ----IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               + + T+  LY     E    IS+ TG+GL +L    K+  ++   + P+  P
Sbjct: 132 IKEKLLVHTQK-LYERVGFEETFFISAQTGDGLAQL----KTAFADAMPQGPWHFP 182


>gi|110798867|ref|YP_696695.1| GTP-binding protein Era [Clostridium perfringens ATCC 13124]
 gi|123148605|sp|Q0TNU5|ERA_CLOP1 RecName: Full=GTPase Era
 gi|110673514|gb|ABG82501.1| GTP-binding protein Era [Clostridium perfringens ATCC 13124]
          Length = 296

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ I I+G  N GKS+L N L  + ++IV++ P TTR+ +   L  E Y +   DT
Sbjct: 1   MFKSGF-ITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNIQTILTGEDYQMIFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +      +++ DL+L L
Sbjct: 60  PGIHKPKHKLGEYMVNSATDSIKDVDLVLFL 90


>gi|56416911|ref|YP_153985.1| GTP-binding protein EngA [Anaplasma marginale str. St. Maries]
 gi|222475278|ref|YP_002563694.1| GTP-binding protein (engA) [Anaplasma marginale str. Florida]
 gi|254995098|ref|ZP_05277288.1| GTP-binding protein EngA [Anaplasma marginale str. Mississippi]
 gi|255003264|ref|ZP_05278228.1| GTP-binding protein EngA [Anaplasma marginale str. Puerto Rico]
 gi|255004391|ref|ZP_05279192.1| GTP-binding protein EngA [Anaplasma marginale str. Virginia]
 gi|56388143|gb|AAV86730.1| GTP-binding protein [Anaplasma marginale str. St. Maries]
 gi|222419415|gb|ACM49438.1| GTP-binding protein (engA) [Anaplasma marginale str. Florida]
          Length = 438

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+  N++  +   I     GTTRD ++ +   +G  + ++DTAGIR+  
Sbjct: 176 ISIIGQPNVGKSTFMNSILGEKRVITDGTAGTTRDSISAEYCYKGVRLLLTDTAGIRKRA 235

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   +EK  IK     +  + +++L+
Sbjct: 236 KVTENMEKLSIKSATDAISRSSVVVLM 262



 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           K+ I+G  N GKS++FN L +   AIV+++   TRD
Sbjct: 3   KVAIVGLPNVGKSTIFNRLVRSKSAIVSNVAHVTRD 38


>gi|238018239|ref|ZP_04598665.1| hypothetical protein VEIDISOL_00063 [Veillonella dispar ATCC 17748]
 gi|237864710|gb|EEP66000.1| hypothetical protein VEIDISOL_00063 [Veillonella dispar ATCC 17748]
          Length = 417

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I   G  NAGKS+L N L  + V++V+++ GTT D ++  ++ L    V I+DTAG
Sbjct: 8   NRVHIGFFGRCNAGKSTLINMLTDQPVSLVSEVAGTTTDPVSKSMEILPLGPVVITDTAG 67

Query: 277 IRETDDI 283
           I +T ++
Sbjct: 68  IDDTTEL 74


>gi|209558820|ref|YP_002285292.1| GTP-binding protein YqeH [Streptococcus pyogenes NZ131]
 gi|209540021|gb|ACI60597.1| GTP-binding protein [Streptococcus pyogenes NZ131]
          Length = 373

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 9/73 (12%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDL 264
           G++ E+ RNG  + ++G +N GKS+L NA+       KDV   +  PGTT D + I LD 
Sbjct: 156 GRINEL-RNGRDVYVVGVTNVGKSTLINAIIQEITGNKDVITTSRFPGTTLDKIEIPLDD 214

Query: 265 EGYLVKISDTAGI 277
             +   I DT GI
Sbjct: 215 GTF---IFDTPGI 224


>gi|163846033|ref|YP_001634077.1| GTP-binding proten HflX [Chloroflexus aurantiacus J-10-fl]
 gi|222523761|ref|YP_002568231.1| GTP-binding proten HflX [Chloroflexus sp. Y-400-fl]
 gi|163667322|gb|ABY33688.1| GTP-binding proten HflX [Chloroflexus aurantiacus J-10-fl]
 gi|222447640|gb|ACM51906.1| GTP-binding proten HflX [Chloroflexus sp. Y-400-fl]
          Length = 445

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 35/192 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276
           I ++G++NAGKS+L NA+   DV     +   +  TTR VL     L G +V + +DT G
Sbjct: 220 IALVGYTNAGKSTLLNAMTGADVLAEDKLFATLDPTTRQVL-----LPGNIVALMTDTVG 274

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL-------------------LLKE--INSKKEIS 315
             +          + T  E+E ADL+L                    L+E  ++ K  ++
Sbjct: 275 FIQKLPPQLVAAFRATLEEIEEADLLLHVVDVTHRNAQEHAQTVEQTLRELGVDHKPVLT 334

Query: 316 FPKNIDFIFIGTKSDLYSTYTE---EYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPF 371
               ID +   T  D+     E     D + +S+  G GL+ L  +I ++L+ +  ++  
Sbjct: 335 VLNKIDLLEGATAEDVGQIAAEMGLPTDIVAVSAQRGWGLQTLGERIVAMLAQRMVRVDA 394

Query: 372 SIPSHKRHLYHL 383
            IP  +  L  L
Sbjct: 395 YIPYQRNDLVAL 406


>gi|310796457|gb|EFQ31918.1| NGP1NT domain-containing protein [Glomerella graminicola M1.001]
          Length = 615

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 11/113 (9%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYK---------IVILGHSNAGKSSLFNALAKKDVAIV 247
           L + + +++   +G L E++R   K         + ++G+ N GKSS+ N L KK VA V
Sbjct: 292 LAMHSSLTNPFGKGSLIELLRQYAKLHSDRKQISVGLIGYPNVGKSSIVNTLRKKKVATV 351

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             IPG T+    I L  + Y++         +TD    ++ + R  + VEN D
Sbjct: 352 APIPGETKVWQYITLTRKIYMIDCPGIVPPSQTD--TPQDLLLRGVVRVENVD 402


>gi|289548419|ref|YP_003473407.1| GTP-binding protein Era [Thermocrinis albus DSM 14484]
 gi|289182036|gb|ADC89280.1| GTP-binding protein Era [Thermocrinis albus DSM 14484]
          Length = 302

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTI-DLDLEGYLVKISD 273
           ++ GY + I+G  N GKS+L N L    V+IV+  PGTTR  VL + ++  E  +V + D
Sbjct: 1   MKVGY-VAIVGKPNVGKSTLLNNLIGTKVSIVSPKPGTTRIRVLGVKNIPNEAQIVFL-D 58

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           T GI    D + +  + +    +++AD+IL +
Sbjct: 59  TPGIYRPRDALGEAMVSQAATSLQDADVILFM 90


>gi|254519548|ref|ZP_05131604.1| GTP-binding protein [Clostridium sp. 7_2_43FAA]
 gi|226913297|gb|EEH98498.1| GTP-binding protein [Clostridium sp. 7_2_43FAA]
          Length = 402

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 17/149 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G +NAGKSSL N    ++V++V++  GTT D +   ++L     V I DTAG
Sbjct: 8   NRKHIAVFGKTNAGKSSLINRFLGQEVSLVSEKEGTTTDPVQKAMELIPVGPVLIIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN-------SKKEISFPK-NIDFIFIGTK 328
             +  ++ E   +KRT   ++  D+ + L +IN        + + +F K NI ++ +  K
Sbjct: 68  FGDKSELGEVR-VKRTLDILKRTDVAIYLFDINDIDLEEFKEAKRNFKKYNIPYVVVINK 126

Query: 329 SDLYSTYTEEYDHL-------ISSFTGEG 350
           SD  +    E   +       +SS TGEG
Sbjct: 127 SDSVNENILEELQIKFKDSIFLSSNTGEG 155


>gi|300814367|ref|ZP_07094638.1| hydrogenase maturation GTPase HydF [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511475|gb|EFK38704.1| hydrogenase maturation GTPase HydF [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 390

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  N+GKSSL N LA ++V+IV+D  GTT D +   ++  G   V I DT G
Sbjct: 7   NRIHIGIFGKVNSGKSSLINLLAAREVSIVSDREGTTTDSVYKSMEFLGLGPVTIMDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           + +    + K   +R   ++E AD+ ++L
Sbjct: 67  VCDK-SFLGKLREQRLERDIEKADIAIIL 94


>gi|225569437|ref|ZP_03778462.1| hypothetical protein CLOHYLEM_05522 [Clostridium hylemonae DSM
           15053]
 gi|225161645|gb|EEG74264.1| hypothetical protein CLOHYLEM_05522 [Clostridium hylemonae DSM
           15053]
          Length = 404

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 3/58 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGI 277
           I I G  NAGKSS+ NAL  +D+AIV+DI GTT D +   ++L   G +V I DT G+
Sbjct: 14  IGIFGKRNAGKSSVINALTGQDLAIVSDIKGTTTDPVLKAMELLPLGPVVMI-DTPGL 70


>gi|15674473|ref|NP_268647.1| GTP-binding protein YqeH [Streptococcus pyogenes M1 GAS]
 gi|21909760|ref|NP_664028.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS315]
 gi|28896548|ref|NP_802898.1| GTP-binding protein YqeH [Streptococcus pyogenes SSI-1]
 gi|71910075|ref|YP_281625.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS5005]
 gi|13621572|gb|AAK33368.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|21903945|gb|AAM78831.1| putative GTP-binding protein [Streptococcus pyogenes MGAS315]
 gi|28811802|dbj|BAC64731.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|71852857|gb|AAZ50880.1| GTP-binding protein [Streptococcus pyogenes MGAS5005]
          Length = 372

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 9/73 (12%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDL 264
           G++ E+ RNG  + ++G +N GKS+L NA+       KDV   +  PGTT D + I LD 
Sbjct: 155 GRINEL-RNGRDVYVVGVTNVGKSTLINAIIQEITGNKDVITTSRFPGTTLDKIEIPLDD 213

Query: 265 EGYLVKISDTAGI 277
             +   I DT GI
Sbjct: 214 GTF---IFDTPGI 223


>gi|269958675|ref|YP_003328462.1| GTP-binding protein EngA [Anaplasma centrale str. Israel]
 gi|269848504|gb|ACZ49148.1| GTP-binding protein EngA [Anaplasma centrale str. Israel]
          Length = 438

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+  N++  +   I     GTTRD ++ +   +G  + ++DTAGIR+  
Sbjct: 176 ISIIGQPNVGKSTFMNSILGEKRVITDGTAGTTRDSISAEYCYKGVRLLLTDTAGIRKRA 235

Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305
            +   +EK  IK     +  + +++L+
Sbjct: 236 KVTENMEKLSIKSATDAISRSSVVVLM 262



 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           K+ I+G  N GKS++FN L +   AIV+++   TRD
Sbjct: 3   KVAIVGLPNVGKSTIFNRLVRSKSAIVSNVAHVTRD 38


>gi|149184562|ref|ZP_01862880.1| GTPase [Erythrobacter sp. SD-21]
 gi|148831882|gb|EDL50315.1| GTPase [Erythrobacter sp. SD-21]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 31/184 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280
           + ++G++NAGKS+LFN L   +V +  D+   T D     + L G    I SDT G    
Sbjct: 178 VALVGYTNAGKSTLFNRLTGAEV-MAEDLLFATLDPTMRAISLPGVEKAILSDTVGFISD 236

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-NSKKE------ISFPKNIDFIF--IGTKS-- 329
                    + T  EV  AD+I  +++I NS  E      +   K +D I    GT S  
Sbjct: 237 LPTQLVAAFRATLEEVTAADVICHVRDISNSSAEAQKTQVLRVLKGLDVIDGDDGTSSIP 296

Query: 330 --DLYSTYT----EEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
             ++++ +     E+ D L            IS+ TGEG++EL+ ++  +L+ K     F
Sbjct: 297 ILEVWNKWDLLDDEKADELGQLADNSDDIIRISAVTGEGVQELLVQLGEMLTAKASVREF 356

Query: 372 SIPS 375
            +P+
Sbjct: 357 EVPA 360


>gi|121534215|ref|ZP_01666040.1| GTP-binding protein Era [Thermosinus carboxydivorans Nor1]
 gi|121307318|gb|EAX48235.1| GTP-binding protein Era [Thermosinus carboxydivorans Nor1]
          Length = 298

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 2/102 (1%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K GE  ++G+ + ++G  N GKS+L N+L  + +AI++D P TTR+ +   L L+   + 
Sbjct: 3   KAGEY-KSGF-VAVIGRPNVGKSTLVNSLVGQKIAIMSDKPQTTRNRILCVLTLDDAQIL 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
             DT GI +    + +  ++     +   D+IL + +  ++K
Sbjct: 61  FIDTPGIHKPKHRLGEYMVQAAETTLREVDVILFVVDATAEK 102


>gi|303242030|ref|ZP_07328522.1| small GTP-binding protein [Acetivibrio cellulolyticus CD2]
 gi|302590448|gb|EFL60204.1| small GTP-binding protein [Acetivibrio cellulolyticus CD2]
          Length = 406

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 80/173 (46%), Gaps = 41/173 (23%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-------------VLTID--- 261
           N   I + G  N GKSSL NAL  + VA+V++I GTT D             V+ ID   
Sbjct: 8   NRLHIALFGRRNVGKSSLINALTHQKVAVVSEIAGTTTDPVYKSMEVLPLGPVVFIDTPG 67

Query: 262 LDLEGYL--VKISDTAGI-RETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           +D EG L  +++  T  + R+TD  I+   G+K+        D    L+E  SKK I   
Sbjct: 68  IDDEGMLGNLRVEKTKEVLRKTDIGIIVTTGMKQW------GD----LEEELSKKFIE-- 115

Query: 318 KNIDFIFIGTKSD------LYSTYTEEYDHL---ISSFTGEGLEELINKIKSI 361
           + I FI    K D      L ST  E        IS++TG G+E L  ++  +
Sbjct: 116 RKIPFIVAVNKCDNLNDFELISTLKERVKVPVIKISAYTGNGVEALFKELTGL 168


>gi|297243698|ref|ZP_06927629.1| GTPase [Gardnerella vaginalis AMD]
 gi|296888449|gb|EFH27190.1| GTPase [Gardnerella vaginalis AMD]
          Length = 507

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 20/173 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G++NAGKSS+ N L      +   +  T    +      +G    + DT G     
Sbjct: 290 VAVVGYTNAGKSSIINRLTGSQELVENALFATLDTAVRRSQTQDGRSYTLVDTVGFVRRL 349

Query: 282 DIVEKEGIKRTFLEVENADLIL---------LLKEINSKKE----ISFPKNIDFIFIGTK 328
                E  K T  EV  AD+IL          + +IN+  E    IS  +++  I    K
Sbjct: 350 PTQLVEAFKSTLEEVGQADVILHVVDGSHPDPISQINAVNEVLANISGVEDMPQIMALNK 409

Query: 329 SDLYSTYTEE-----YDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           SD+ S    E     Y    ++S+F+GE L+ L N+++ +L +   ++  ++P
Sbjct: 410 SDMMSDAARERFSSLYPDAVIVSAFSGENLQILRNRLEELLPSPRVRVDVTLP 462


>gi|322373553|ref|ZP_08048089.1| ribosome biogenesis GTPase YqeH [Streptococcus sp. C150]
 gi|321278595|gb|EFX55664.1| ribosome biogenesis GTPase YqeH [Streptococcus sp. C150]
          Length = 372

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R G  + ++G +N GKS+L NA+ K     KDV   +  PGTT D + I LD   Y 
Sbjct: 158 EKLRKGRDVYVVGVTNVGKSTLINAIIKEITGDKDVITTSRFPGTTLDKIEIPLDDGTY- 216

Query: 269 VKISDTAGI 277
             I DT GI
Sbjct: 217 --IFDTPGI 223


>gi|317501762|ref|ZP_07959948.1| small GTP-binding protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088717|ref|ZP_08337627.1| hypothetical protein HMPREF1025_01210 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896795|gb|EFV18880.1| small GTP-binding protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330407240|gb|EGG86743.1| hypothetical protein HMPREF1025_01210 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 410

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 4/82 (4%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRETDDI 283
           G  NAGKSS+ NA+  +D+A+V+D+ GTT D +   ++L   G +V I DT GI +  ++
Sbjct: 18  GRRNAGKSSVMNAVTGQDLAVVSDVKGTTTDPVYKSMELLPIGPVVMI-DTPGIDDEGEL 76

Query: 284 VEKEGIKRTFLEVENADLILLL 305
             K  +K+++  +   D  +L+
Sbjct: 77  -GKLRVKKSYQTLNKTDAAVLV 97


>gi|281490709|ref|YP_003352689.1| GTP-binding protein [Lactococcus lactis subsp. lactis KF147]
 gi|281374478|gb|ADA63999.1| GTP-binding protein [Lactococcus lactis subsp. lactis KF147]
          Length = 401

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 15/103 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ K     +DV   +  PGTT D + I LD +  L
Sbjct: 195 EYYRRGRDVYVVGVTNVGKSTLINAIIKSASGSEDVITTSRFPGTTLDKIEIPLDEDSAL 254

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           +   DT GI          G    +LE E+   +   KEI  K
Sbjct: 255 I---DTPGIIH-------RGQMAHYLEPEDLKYVSPRKEIKPK 287


>gi|238750421|ref|ZP_04611922.1| hypothetical protein yrohd0001_21320 [Yersinia rohdei ATCC 43380]
 gi|238711352|gb|EEQ03569.1| hypothetical protein yrohd0001_21320 [Yersinia rohdei ATCC 43380]
          Length = 259

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + AGKSSL NAL + +V  V+D+   TRDVL + L    + + + D  G+ E++
Sbjct: 7   IGIMGKTGAGKSSLCNALFQGEVTPVSDVNACTRDVLRLRLSSGDHSLILVDLPGVGESE 66

Query: 282 DIVEK-EGIKRTFLEVENADLILLL 305
              E+ E + R  L   + DLIL +
Sbjct: 67  QRDEEYEYLYRKVL--PDLDLILWV 89


>gi|219683278|ref|YP_002469661.1| GTP-binding proten HflX [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|219620928|gb|ACL29085.1| GTP-binding proten HflX [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 506

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 34/207 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I ++G++NAGKSSL N L       + A+   +    R   T D  L  Y+    DT G 
Sbjct: 276 IAVVGYTNAGKSSLTNRLTGSTELVENALFATLDTAVRRTQTRDGRLYAYV----DTVGF 331

Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKE----ISFPKNIDF 322
             R   ++V  E  K T  E+ +ADLI+ +          +I++  E    I   + +  
Sbjct: 332 VRRLPTNLV--EAFKSTLEEIADADLIVHVVDASHPDPFSQIDAVNEVLQTIDGVERLPV 389

Query: 323 IFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           I +  K+DL      E         H++SS TGEG++ L   ++S+L +    +   +P 
Sbjct: 390 ITVFNKADLIDDAKRERLHALAPDAHIVSSATGEGVDALRADVESMLVDPDVHVEALLPY 449

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGL 402
            +  L  L++   Y  + SL  +D G+
Sbjct: 450 TEGSL--LAKVREYGRLESLEYRDDGI 474


>gi|34557761|ref|NP_907576.1| putative ferrous iron transport protein B [Wolinella succinogenes
           DSM 1740]
 gi|34483478|emb|CAE10476.1| PUTATIVE FERROUS IRON TRANSPORT PROTEIN B [Wolinella succinogenes]
          Length = 759

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 221 KIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           KI +LG  N GKS+LFN L  AK+ +A   + PG T D  +    L    V++ D  GI 
Sbjct: 8   KIALLGQPNCGKSTLFNTLSGAKQHIA---NYPGVTVDKKSAYFRLGDQEVELIDLPGIY 64

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
                  +E +   +L  E  DLIL
Sbjct: 65  SLSTFSPEERVSLAYLREEKPDLIL 89


>gi|291549419|emb|CBL25681.1| iron-only hydrogenase maturation protein HydF [Ruminococcus torques
           L2-14]
          Length = 423

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 60/101 (59%), Gaps = 8/101 (7%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDL 264
           ++Q  + E +  G+     G  NAGKSS+ NA+  +D+A+V+D+ GTT D +  T++L  
Sbjct: 13  MNQTPVSERVHIGF----FGKRNAGKSSVMNAVTGQDLAVVSDVKGTTTDPVYKTMELLP 68

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            G +V + DT GI +  ++ E   +K+++  +   D+ +++
Sbjct: 69  LGPVV-MMDTPGIDDEGELGELR-VKKSYQVLNKTDIAVVV 107


>gi|254439098|ref|ZP_05052592.1| GTP-binding proten HflX [Octadecabacter antarcticus 307]
 gi|198254544|gb|EDY78858.1| GTP-binding proten HflX [Octadecabacter antarcticus 307]
          Length = 430

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 29/178 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN L    V  V D+   T D     +DL  G  + +SDT G    
Sbjct: 205 VALVGYTNAGKSTLFNRLTGASV-FVEDMLFATLDPTMRKVDLPNGDAIIMSDTVGFISD 263

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-------------NSKKEISFPKNIDFIFIGT 327
                    + T  EV  AD+IL +++I             ++ +++    ++  I +  
Sbjct: 264 LPTQLVASFRATLEEVLEADVILHVRDISHPQSADQKKAVLDTLRQLDVNPDVPMIEVLN 323

Query: 328 KSDLYSTYTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL +   E+ D+L             S+ TG+GL+ L+++I   L    + L  ++
Sbjct: 324 KIDLLA--PEDADYLQALHKDGENVFGTSAVTGQGLDTLLDQITEKLKGTTRALTLTL 379


>gi|116748319|ref|YP_845006.1| GTP-binding protein Era [Syntrophobacter fumaroxidans MPOB]
 gi|116697383|gb|ABK16571.1| GTP-binding protein Era [Syntrophobacter fumaroxidans MPOB]
          Length = 307

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++GY + ++G  N GKS+L N   ++ ++I    P TTR+ +   L   G+ +   DT
Sbjct: 8   VFKSGY-VALIGAPNVGKSTLLNRFLREKISITAPKPQTTRNRILGILTEPGFQIVFMDT 66

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
            GI    D   +  +      +  AD +  L EI
Sbjct: 67  PGIHRAKDRFNRVLVDTALATLGEADAVCFLIEI 100


>gi|221194854|ref|ZP_03567911.1| GTP-binding protein Era [Atopobium rimae ATCC 49626]
 gi|221185758|gb|EEE18148.1| GTP-binding protein Era [Atopobium rimae ATCC 49626]
          Length = 307

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + ++G  + GKS+L NA  K+ +AI + +  TTR  L   ++   + + I DT G
Sbjct: 13  KSGF-VALVGRPSVGKSTLLNACLKEKIAITSPVAQTTRRRLRGVVNGPNFQLVIIDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           + +  D + KE  K    E+ +AD +  L
Sbjct: 72  LHKPKDALGKELNKTALGELNDADCVAFL 100


>gi|70943507|ref|XP_741791.1| translation initiation factor if-2 [Plasmodium chabaudi chabaudi]
 gi|56520395|emb|CAH75788.1| translation initiation factor if-2, putative [Plasmodium chabaudi
           chabaudi]
          Length = 671

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 57/222 (25%)

Query: 217 RNGYKIVI--LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           RN Y  V+  +GH N GK++L + +   ++A+  +    T+++  I  +LE Y     DT
Sbjct: 187 RNNYYTVVSVIGHINHGKTTLLDKVTNNNLALY-EAGCITQNIKPIHFELEPYKFTFLDT 245

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL------KEINSKKEISFPK--NIDFIFIG 326
            G +    I +    +  FL    +D++++L       EI +++ I +    NI  IF  
Sbjct: 246 PGHK----IFQILRGRAAFL----SDILIILISLEVGAEIQTEEAIKYADKFNIPVIFAL 297

Query: 327 TKSDLYS-------------------------TYTEEYDH--LISSFTGEGLEELINKIK 359
            K+D+Y                           Y+ E D+   ISS TG  L  LIN+I 
Sbjct: 298 NKADIYKENESVVKAELKNQCNRMFDEGTLKHNYSNEIDNAITISSLTGYNLPRLINRIY 357

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQ-----TVRYLEMASLN 396
            I  N       ++P H  ++++ +Q      V+  ++AS N
Sbjct: 358 FIKQN------INLPYHSANVFYNNQNGIKKNVQLKDVASAN 393


>gi|217970099|ref|YP_002355333.1| GTP-binding protein HSR1-related [Thauera sp. MZ1T]
 gi|217507426|gb|ACK54437.1| GTP-binding protein HSR1-related [Thauera sp. MZ1T]
          Length = 324

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++I+G  N GKS+L NAL K+ VA V D P  T+   T+DL   G  + ++DT G+
Sbjct: 118 RMMIMGIPNVGKSTLMNALLKRKVAKVGDEPAVTKHQQTLDL---GPGMTLTDTPGM 171


>gi|86606787|ref|YP_475550.1| GTP-binding domain-containing protein [Synechococcus sp. JA-3-3Ab]
 gi|86555329|gb|ABD00287.1| GTP-binding domain protein [Synechococcus sp. JA-3-3Ab]
          Length = 507

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 25/148 (16%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-- 221
           KLT  R  ++ADL     +DV     K        L++DIS    Q K  EI R   +  
Sbjct: 92  KLT--RDQVQADL-----QDVDRLIQK--------LQDDISRRALQAKAREIDRRLAQEE 136

Query: 222 --IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGI 277
             +V+ G ++AGK+SL NAL  + V       GTT+        LEG+   + ++DT G+
Sbjct: 137 LHLVVFGTASAGKTSLINALLGQPVGETAPTLGTTQQGSIHTYQLEGWSGPISLTDTPGL 196

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305
                  E E   R     + ADL++L+
Sbjct: 197 LTIGGAGEAEA--RAL--AQKADLLILV 220


>gi|219112517|ref|XP_002178010.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410895|gb|EEC50824.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 391

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 16/99 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKIS 272
           R    + I+G  NAGKS L N L +  VA V+    TTRD      T+D D + Y V   
Sbjct: 43  RKRLDVAIVGLPNAGKSQLLNVLTQSTVAAVSRKRHTTRDGILGARTVD-DTQLYFV--- 98

Query: 273 DTAG-IRETDDIVEKEGIKRTFL-----EVENADLILLL 305
           DT G +R++    +KEG+ R  +     E+EN D  LL+
Sbjct: 99  DTPGFLRQSQ--AKKEGLNRDLVVTASSEMENVDFSLLV 135


>gi|255505458|ref|ZP_05346246.3| GTP-binding protein [Bryantella formatexigens DSM 14469]
 gi|255267758|gb|EET60963.1| GTP-binding protein [Bryantella formatexigens DSM 14469]
          Length = 406

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 14/156 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTA 275
           N   I   G  NAGKSS+ NA+  +++A+V+++ GTT D +  T++L   G  V I DT 
Sbjct: 17  NRVHIGFFGRRNAGKSSVVNAVTNQEIAVVSEVRGTTTDPVYKTMELLPVGP-VMIIDTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGT 327
           G  +   + E   ++RT   +   D+ +L+ +  +     ++E++     K I +I    
Sbjct: 76  GYDDEGSLGELR-VRRTKQVLNKTDVAVLVVDATAGMTEVERELTGIFAKKEIPYIIAYN 134

Query: 328 KSDLYSTYTEEYDH--LISSFTGEGLEELINKIKSI 361
           K+DL     E   H   IS+     + EL  KI ++
Sbjct: 135 KADLLERVPEAGAHEIYISAREKSNIYELKEKIAAL 170


>gi|78356993|ref|YP_388442.1| ribosome biogenesis GTP-binding protein YsxC [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|119369190|sp|Q30ZZ9|ENGB_DESDG RecName: Full=Probable GTP-binding protein EngB
 gi|78219398|gb|ABB38747.1| Small GTP-binding protein domain [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 218

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           N  +I + G SN GKSSL N LA +K +A  +  PG TR +    +D +GY V
Sbjct: 21  NAPQIALAGRSNVGKSSLVNTLAGRKGLARTSSTPGKTRSINFYKVDPDGYYV 73


>gi|191165829|ref|ZP_03027667.1| putative GTPase [Escherichia coli B7A]
 gi|190904153|gb|EDV63864.1| putative GTPase [Escherichia coli B7A]
          Length = 337

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K+ E I     I ++G + AGKSS+ NAL K +V  V+D+   TR+V  + +    + +K
Sbjct: 71  KISEAIDYEPVIGVMGKTGAGKSSVCNALFKGEVCAVSDVEACTREVQELRIRFGKHSLK 130

Query: 271 ISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
           I D  G+ E   +  E E + R  L   + DLIL +
Sbjct: 131 IIDIPGVGENAQLDKEYEDLYRNLL--PSLDLILWV 164


>gi|222151146|ref|YP_002560300.1| hypothetical protein MCCL_0897 [Macrococcus caseolyticus JCSC5402]
 gi|222120269|dbj|BAH17604.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 425

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 2/112 (1%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           ++DI      I  H  + +     RN +++ ++G++NAGKS+ FNAL+  D   + D+  
Sbjct: 176 IHDIKLQLETIKQHRQRYRENRKKRNIFQVALVGYTNAGKSTWFNALSDSD-TYMEDLLF 234

Query: 253 TTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            T D  +  + L EGY V +SDT G  +       E    T  E + AD+++
Sbjct: 235 ATLDPKSKMMKLHEGYPVLLSDTVGFIQQLPTHLIEAFSSTLEEAKYADILI 286


>gi|91794552|ref|YP_564203.1| GTP-binding protein, HSR1-related [Shewanella denitrificans OS217]
 gi|91716554|gb|ABE56480.1| GTP-binding protein, HSR1-related [Shewanella denitrificans OS217]
          Length = 435

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 40/188 (21%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFN L   DV     +  T    L   LDL    V ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNGLTSSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKNI 320
             D+V     K T  E   A+L+L                   +LKEI++ +       I
Sbjct: 259 PHDLV--AAFKATLQETRQAELLLHIVDCADDNMQDNFDQVQDVLKEIDADE-------I 309

Query: 321 DFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
             + +  K DL   +    D+          +S+  G+G + L+  I  ++ N   +L  
Sbjct: 310 PQLVVCNKIDLLEDFAPRIDYAEDGTPERVWLSAQKGQGFDLLLQAITELVGNIVLELTL 369

Query: 372 SIPSHKRH 379
            +P+   H
Sbjct: 370 KVPATGGH 377


>gi|113476463|ref|YP_722524.1| ferrous iron transport protein B [Trichodesmium erythraeum IMS101]
 gi|110167511|gb|ABG52051.1| ferrous iron transport protein B [Trichodesmium erythraeum IMS101]
          Length = 606

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKS+ FN +     A V + PG T D+   ++ +   + +  D  GI   
Sbjct: 19  KVALIGMPNTGKSTFFNRITGVS-AHVGNWPGITVDLFQAEVKINKEITQFIDLPGIYNF 77

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNI 320
           +   E E + + FLE    DL++++  INS    ++I  P  +
Sbjct: 78  NGFSEDEKVVQNFLENNPVDLVIVV--INSSQIDRQIMLPLQV 118


>gi|303228588|ref|ZP_07315415.1| hydrogenase maturation GTPase HydF [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516767|gb|EFL58682.1| hydrogenase maturation GTPase HydF [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 425

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I   G  NAGKS+L N L  + V++V+++ GTT D ++  ++ L    V I+DTAG
Sbjct: 8   NRVHIGFFGRCNAGKSTLINMLTDQPVSLVSEVAGTTTDPVSKSMEILPLGPVVITDTAG 67

Query: 277 IRETDDI 283
           I +T ++
Sbjct: 68  IDDTSEL 74


>gi|288918466|ref|ZP_06412817.1| small GTP-binding protein [Frankia sp. EUN1f]
 gi|288350106|gb|EFC84332.1| small GTP-binding protein [Frankia sp. EUN1f]
          Length = 466

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D PG TRD +  D    G    + DT G
Sbjct: 32  LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVAYDAVWNGRRFTVVDTGG 86



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N +   + ++V D+ GTTRD +   + + G      DTAG+R  
Sbjct: 205 RVALIGRPNVGKSSLLNKIVGAERSLVHDVAGTTRDPVDELVTVGGETWMFIDTAGLRRR 264

Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305
             + E  G +     RT   +E A++ ++L
Sbjct: 265 --VKEASGAEYYSSLRTASALEAAEVAIVL 292


>gi|167630513|ref|YP_001681012.1| GTP-binding protein era [Heliobacterium modesticaldum Ice1]
 gi|226741216|sp|B0TAF1|ERA_HELMI RecName: Full=GTPase Era
 gi|167593253|gb|ABZ85001.1| GTP-binding protein era [Heliobacterium modesticaldum Ice1]
          Length = 299

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E +R+G+ I I+G  N GKS+L N L  K VAI++D P TTR+ +   L+         D
Sbjct: 2   EKLRSGF-ISIIGRPNVGKSTLMNQLIGKKVAIMSDKPQTTRNRIVGVLNAPKGQAIFLD 60

Query: 274 TAGI 277
           T GI
Sbjct: 61  TPGI 64


>gi|120597493|ref|YP_962067.1| GTP-binding protein, HSR1-related [Shewanella sp. W3-18-1]
 gi|146294366|ref|YP_001184790.1| GTP-binding protein, HSR1-related [Shewanella putrefaciens CN-32]
 gi|120557586|gb|ABM23513.1| GTP-binding protein, HSR1-related [Shewanella sp. W3-18-1]
 gi|145566056|gb|ABP76991.1| GTP-binding protein, HSR1-related [Shewanella putrefaciens CN-32]
          Length = 435

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 34/227 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFNAL   DV     +  T    L   LDL    V ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNALTSSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDF-----IFIGT 327
             D+V     K T  E   A+L+L + +        N ++  S  K+I+      + +  
Sbjct: 259 PHDLV--AAFKATLQETRQAELLLHIVDCADENMADNFEQVQSVLKDIEADEVMQLIVCN 316

Query: 328 KSDLYSTYTE--EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           K DL    T   EYD         +S+    G + L+  I  ++    ++L   IP+   
Sbjct: 317 KIDLLEDVTPRIEYDDQGKPIRVWVSAQKRLGFDLLLKAITELIGEVIRELTLRIPATAG 376

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419
           H  +L Q  R   +      D G  I++  L      RLA  S G++
Sbjct: 377 H--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDADWRRLAKQSQGEL 421


>gi|309775528|ref|ZP_07670528.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916622|gb|EFP62362.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 3_1_53]
          Length = 299

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I I+G  NAGKS+L NA+ ++ VAI T  P TTR+ ++  L  E       DT GI
Sbjct: 8   ISIIGRPNAGKSTLLNAILQEKVAITTPKPQTTRNNISGILTREDAQFVFVDTPGI 63


>gi|303245647|ref|ZP_07331930.1| small GTP-binding protein [Desulfovibrio fructosovorans JJ]
 gi|302492910|gb|EFL52775.1| small GTP-binding protein [Desulfovibrio fructosovorans JJ]
          Length = 403

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 218 NGYKIVI--LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
            G ++VI  +G  NAGKSSL NA+  ++VAIV+D  GTT D +    +L     V   DT
Sbjct: 10  RGVRLVITFVGRRNAGKSSLINAVTGQEVAIVSDFAGTTTDPVAKPYELLPLGPVTFYDT 69

Query: 275 AGIRETDDIVE 285
           AG+   DD+ E
Sbjct: 70  AGL---DDVGE 77


>gi|303288864|ref|XP_003063720.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454788|gb|EEH52093.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 292

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + I+G  NAGKS+  NAL    ++IVT  P TTR  +   +  + + + + DT G
Sbjct: 2   RSGY-VAIVGRPNAGKSTFMNALVGTKLSIVTYKPQTTRHRILGLVSEDDFQMVLLDTPG 60

Query: 277 I-RETDDIVEKEGIKRTFLEVENADLILLL 305
           + RE  + +++  +K     + NAD++L +
Sbjct: 61  VMREEFNKLDEMMLKSVRNAMANADVLLAI 90


>gi|320353707|ref|YP_004195046.1| iron-only hydrogenase maturation protein HydF [Desulfobulbus
           propionicus DSM 2032]
 gi|320122209|gb|ADW17755.1| iron-only hydrogenase maturation protein HydF [Desulfobulbus
           propionicus DSM 2032]
          Length = 416

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I + G  N GKSSL NA+ ++ VAIV+++ GTT D +   ++L   G ++ I DTAG+ +
Sbjct: 13  IGLFGRRNVGKSSLLNAITRQQVAIVSNVAGTTTDPVEKPMELLPLGPVLFI-DTAGVDD 71

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
              + E   I RT    +  DL +L+
Sbjct: 72  VGALGEMR-IARTRAVFDRTDLGILV 96


>gi|113968943|ref|YP_732736.1| GTP-binding protein, HSR1-related [Shewanella sp. MR-4]
 gi|114048919|ref|YP_739469.1| GTP-binding protein, HSR1-related [Shewanella sp. MR-7]
 gi|113883627|gb|ABI37679.1| GTP-binding protein, HSR1-related [Shewanella sp. MR-4]
 gi|113890361|gb|ABI44412.1| GTP-binding protein, HSR1-related [Shewanella sp. MR-7]
          Length = 435

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 97/227 (42%), Gaps = 34/227 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFNAL   DV     +  T    L   LDL    V ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNALTSSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDF-----IFIGT 327
             D+V     K T  E   ADL+L + +        N ++  +  ++ID      + +  
Sbjct: 259 PHDLV--AAFKATLQETRQADLLLHIVDCADENMADNFEQVQNVLEDIDAAGVMQLVVCN 316

Query: 328 KSDLYSTYTE--EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           K DL    T   EYD         +S+    G + L+  I  ++     +L   IP+   
Sbjct: 317 KIDLLEDVTPRIEYDEHSKPVRVWVSAQKRLGFDLLLKAITELIGEVIHELTLKIPATAG 376

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419
           H  +L Q  R   +      D G  I++  L      RLA  S G++
Sbjct: 377 H--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDADWRRLAKQSQGEL 421


>gi|300023748|ref|YP_003756359.1| GTP-binding protein Era [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525569|gb|ADJ24038.1| GTP-binding protein Era [Hyphomicrobium denitrificans ATCC 51888]
          Length = 312

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 3/90 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+ + +LG +NAGKS+L NAL    VAIV+    TTR  +  I ++ +  +V + DTA
Sbjct: 17  RCGF-VTVLGPTNAGKSTLVNALVGTKVAIVSHKVQTTRAPIRGIAVEGQSQIVFL-DTA 74

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI      +++  I   +  +E+AD +LL+
Sbjct: 75  GIFNPKRRLDRAMIDAAWSGLEDADAVLLV 104


>gi|194476731|ref|YP_002048910.1| hypothetical protein PCC_0251 [Paulinella chromatophora]
 gi|171191738|gb|ACB42700.1| hypothetical protein PCC_0251 [Paulinella chromatophora]
          Length = 518

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 11/135 (8%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS- 272
           E+ R  + IV+ G  ++GK+SL  AL +K V  V    G+T D L   + ++G   K++ 
Sbjct: 119 ELERGDFLIVLFGAGSSGKTSLVRALLEKKVGRVEASMGSTVDCLNYRMHIQGLKRKLTL 178

Query: 273 -DTAGIRETDDIVEKEGIKRTFLEVENADLILL-------LKEINSKKEISFPKNIDFIF 324
            DT GI E     +   IK  + +   ADL+LL       L+E+ + + +   +    + 
Sbjct: 179 IDTPGIFEAGQQGQLREIKARW-QASRADLVLLIVDSDLRLEEMEAIRSLKALRK-RLLI 236

Query: 325 IGTKSDLYSTYTEEY 339
           +  KSDL +   E +
Sbjct: 237 VLNKSDLLTEQEENF 251


>gi|160947545|ref|ZP_02094712.1| hypothetical protein PEPMIC_01480 [Parvimonas micra ATCC 33270]
 gi|158446679|gb|EDP23674.1| hypothetical protein PEPMIC_01480 [Parvimonas micra ATCC 33270]
          Length = 298

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 19/152 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I++G+ + I+G SN GKS+L N +  + ++I++  P TTR  L +  +     +   DT 
Sbjct: 4   IKSGF-VTIVGRSNVGKSTLLNRIIGEKISIISSKPQTTRANLKLIYNSLDSQIVFLDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFI 323
           GI+   + + +  +K +   + + DLIL + ++N +            ++I+ PK    I
Sbjct: 63  GIQNPKNKLGEFMLKESRSSLRDVDLILYMVDVNFEIGELDNLIIDILRKINLPK----I 118

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            +  K D  +  +EE   L+S + G  L E I
Sbjct: 119 CVINKID--TLNSEELSKLVSKYEGMELFEKI 148


>gi|153816261|ref|ZP_01968929.1| hypothetical protein RUMTOR_02510 [Ruminococcus torques ATCC 27756]
 gi|145846444|gb|EDK23362.1| hypothetical protein RUMTOR_02510 [Ruminococcus torques ATCC 27756]
          Length = 408

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 4/82 (4%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRETDDI 283
           G  NAGKSS+ NA+  +D+A+V+D+ GTT D +   ++L   G +V I DT GI +  ++
Sbjct: 18  GRRNAGKSSVMNAVTGQDLAVVSDVKGTTTDPVYKSMELLPIGPVVMI-DTPGIDDEGEL 76

Query: 284 VEKEGIKRTFLEVENADLILLL 305
             K  +K+++  +   D  +L+
Sbjct: 77  -GKLRVKKSYQTLNKTDAAVLV 97


>gi|89891790|ref|ZP_01203292.1| GTP-binding protein [Flavobacteria bacterium BBFL7]
 gi|89515945|gb|EAS18610.1| GTP-binding protein [Flavobacteria bacterium BBFL7]
          Length = 300

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 8/104 (7%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NAL  + ++I+T    TTR  +   ++ E + + +SDT GI +    
Sbjct: 14  IVGNPNVGKSTLMNALVGERLSIITSKAQTTRHRILGIVNGEDFQIVLSDTPGIIKPAYK 73

Query: 284 VEK---EGIKRTFLEVENADLILLLKEINSK--KEISFPKNIDF 322
           +++   E +K  F   E+AD IL + E+  K  K  +F K + +
Sbjct: 74  LQESMMEFVKNAF---EDADCILYMVELGEKELKNEAFEKRLTY 114


>gi|261250990|ref|ZP_05943564.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio orientalis CIP
           102891]
 gi|260937863|gb|EEX93851.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio orientalis CIP
           102891]
          Length = 311

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 13/104 (12%)

Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           F +E +V+      S ++ +N I+ L   ++ H  + ++G+ IR     +I+G  N GKS
Sbjct: 75  FEKEHNVKAIAITTSQQQEVNRIMELVRKLAPH--REEIGKNIRT----MIMGIPNVGKS 128

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           ++ NALA + +A+  + P  TR    I+L   G  + +SDT GI
Sbjct: 129 TIINALAGRTIAVTGNQPAVTRRQQRINLQ-NG--IVLSDTPGI 169


>gi|221061357|ref|XP_002262248.1| gtp binding protein [Plasmodium knowlesi strain H]
 gi|193811398|emb|CAQ42126.1| gtp binding protein, putative [Plasmodium knowlesi strain H]
          Length = 831

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK--DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +IIRN   I I+G  N GKS++FN L +K  + +IV     +TRD +  ++D +GY  ++
Sbjct: 254 KIIRNLPLISIIGRPNVGKSTIFNRLTRKFQEGSIVLG-ESSTRDKIYGEVDWDGYKFEV 312

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            DT G+   D+   K+   +  L ++ + ++L +
Sbjct: 313 VDTGGLIFEDEKFCKQIRDQIMLALKESSVVLFV 346


>gi|62320818|dbj|BAD93758.1| hypothetical protein [Arabidopsis thaliana]
          Length = 370

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ I+G  N GKS+LFN L  ++ AIV D PG TRD L
Sbjct: 160 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRL 197


>gi|310778258|ref|YP_003966591.1| iron-only hydrogenase maturation protein HydF [Ilyobacter
           polytropus DSM 2926]
 gi|309747581|gb|ADO82243.1| iron-only hydrogenase maturation protein HydF [Ilyobacter
           polytropus DSM 2926]
          Length = 409

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 20/132 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279
           I I G  N GKS+L NAL  +++AIV++  GTT D +   +++   G  V I DTAG+ +
Sbjct: 15  IAIFGKRNMGKSTLINALTGQNLAIVSEYAGTTTDPVYKAMEILPIGPCV-IIDTAGLDD 73

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL----------KEINSKKEISFPKNIDFIFIGTKS 329
             D+ E   +K++   ++  D+ LL           +EI    E    KNI FI +  K 
Sbjct: 74  LGDLGELR-VKKSLEVLKKTDIALLTVTGEGFSDFDREIIKLLE---EKNIPFITVINKK 129

Query: 330 DLY---STYTEE 338
           D+    S +TEE
Sbjct: 130 DIIPANSEFTEE 141


>gi|289192710|ref|YP_003458651.1| small GTP-binding protein [Methanocaldococcus sp. FS406-22]
 gi|288939160|gb|ADC69915.1| small GTP-binding protein [Methanocaldococcus sp. FS406-22]
          Length = 185

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 14/98 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR----------DVLTIDLDLEGYLV 269
           +KI I+G  NAGKSS+ NAL  K V++V+++ GTT+           +  I  + E   +
Sbjct: 6   FKIAIIGPENAGKSSIMNALFGKYVSLVSEVGGTTKMPIKRYWGKLKIGRIKEEPEFVNL 65

Query: 270 KISDTAGIRETDD----IVEKEGIKRTFLEVENADLIL 303
              D  G+  T D    I+  + +++TF E+ ++D+I+
Sbjct: 66  VFVDLGGLYTTTDKQSPIMTPKVLEKTFEEINDSDMII 103


>gi|77919228|ref|YP_357043.1| GTPases [Pelobacter carbinolicus DSM 2380]
 gi|77545311|gb|ABA88873.1| iron-only hydrogenase maturation protein HydF [Pelobacter
           carbinolicus DSM 2380]
          Length = 416

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I + G  N GKSSL NAL +++V+IV+++ GTT D +   ++ L    V   DTAGI + 
Sbjct: 12  IGLFGRRNVGKSSLLNALTRQNVSIVSNVAGTTTDAVEKPMEMLPIGPVLFIDTAGIDDV 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDLYS 333
             + E   +++T    +  D+ L++ E     +           + I  + +  K+D+  
Sbjct: 72  GALGEMR-VQKTRQVFDRTDIGLIVAEAGRWDDFEDAILAELQQRQIPVVVVFNKTDIAQ 130

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370
             T   + L          ++  GEG+ EL   +   +  +F   P
Sbjct: 131 PDTGHLESLSQKDVPCVATAAEKGEGIIELRESLIRTVPEEFINPP 176


>gi|291484291|dbj|BAI85366.1| hypothetical protein BSNT_02799 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 460

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +NG  +I ++G++NAGKS+ FN L   D +   D+   T D +T  + L  GY V +SDT
Sbjct: 237 KNGVLQIALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLSDT 295

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            G  +          + T  EV+ ADLIL L
Sbjct: 296 VGFIQDLPTTLIAAFRSTLEEVKEADLILHL 326


>gi|295399214|ref|ZP_06809196.1| GTP-binding protein Era [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110184|ref|YP_003988500.1| GTP-binding protein Era [Geobacillus sp. Y4.1MC1]
 gi|294978680|gb|EFG54276.1| GTP-binding protein Era [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215285|gb|ADP73889.1| GTP-binding protein Era [Geobacillus sp. Y4.1MC1]
          Length = 302

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 38/185 (20%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID------LD 263
           + GYK   + I+G  N GKS+  N +  + +AI++D P TTR+    V T D      +D
Sbjct: 3   KEGYKSGFVSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIFID 62

Query: 264 LEG----------YLVKISDTAGIRETDDIV----EKEGIKRTFLEVENADLILLLKEIN 309
             G          +++K++  A ++E D I+     +EG  R      +A +I  LKE+N
Sbjct: 63  TPGMHKPKHKLGDFMMKVALNA-LKEVDLILFMINAEEGFGRG-----DAYIIERLKEVN 116

Query: 310 SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNK 365
           +   +   K ID +       L   Y E Y       IS+  G  +E L+ +IK  L   
Sbjct: 117 TPVFLVINK-IDLVHPNDLLPLIDRYKELYPFAEIIPISALQGNNIETLVEQIKKYLPEG 175

Query: 366 FKKLP 370
            +  P
Sbjct: 176 PQYYP 180


>gi|255087368|ref|XP_002505607.1| predicted protein [Micromonas sp. RCC299]
 gi|226520877|gb|ACO66865.1| predicted protein [Micromonas sp. RCC299]
          Length = 292

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + I+G  NAGKS+L N L    ++IVT  P TTR  +   +  + Y + + DT G
Sbjct: 2   RSGY-VAIVGRPNAGKSTLLNQLVGTKLSIVTFKPQTTRHRILGIVSEDHYQMVLLDTPG 60

Query: 277 I-RETDDIVEKEGIKRTFLEVENADLILLL 305
           + +E  + +++  +K     + NAD++L +
Sbjct: 61  VMKEEFNKLDEMMLKSVRNAMANADVLLAI 90


>gi|282600026|ref|ZP_05972754.2| putative GTP-binding protein [Providencia rustigianii DSM 4541]
 gi|282566797|gb|EFB72332.1| putative GTP-binding protein [Providencia rustigianii DSM 4541]
          Length = 297

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 36/71 (50%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +L  +I     I ++G + AGKSSL NAL +  ++ V D+ G TR      + +  + +
Sbjct: 31  NQLNHLINYSPTIGLMGKTGAGKSSLINALFQSSLSPVNDVSGCTRQAQRFSMTMNNHTL 90

Query: 270 KISDTAGIRET 280
              D  G+ E+
Sbjct: 91  TFVDLPGVGES 101


>gi|167766294|ref|ZP_02438347.1| hypothetical protein CLOSS21_00798 [Clostridium sp. SS2/1]
 gi|167712013|gb|EDS22592.1| hypothetical protein CLOSS21_00798 [Clostridium sp. SS2/1]
 gi|291559076|emb|CBL37876.1| iron-only hydrogenase maturation protein HydF [butyrate-producing
           bacterium SSC/2]
          Length = 402

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I + G  NAGKSS+ NA+  +++AIV+++ GTT D +   ++L   G +V I DT G+ +
Sbjct: 14  IALFGKRNAGKSSVINAMTNQELAIVSNVKGTTTDPVYKAMELLPLGPVVMI-DTPGLDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
             ++ EK  +K+    +  AD+ L++
Sbjct: 73  EGELGEKR-VKKAKEVLAKADIALVI 97


>gi|330993373|ref|ZP_08317308.1| GTP-binding protein era-like protein [Gluconacetobacter sp. SXCC-1]
 gi|329759403|gb|EGG75912.1| GTP-binding protein era-like protein [Gluconacetobacter sp. SXCC-1]
          Length = 305

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 83/168 (49%), Gaps = 24/168 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+ + I+G  NAGKS+L N +A   ++IV+    TTR  VL I L   G  + + DT 
Sbjct: 12  RCGF-VAIVGAPNAGKSTLLNRMAGTKLSIVSPKAQTTRFRVLGI-LMRHGAQILLVDTP 69

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------------KKEISFPKN 319
           GI +    +++  +   +   ++AD+ LL+ +  +                K+ +    N
Sbjct: 70  GIFQPRRRLDRAMVAAAWTGSDDADITLLIVDARAGMTDALRAIAARLAEQKRRLWLVLN 129

Query: 320 -IDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
             D +     +   ++L +    E+  ++S+ +GEG+++L++++ + L
Sbjct: 130 KTDLVKRDTLLPLTAELSAILPVEHVFMVSARSGEGVDDLLDRLAAAL 177


>gi|325973342|ref|YP_004250406.1| GTP-binding protein engA [Mycoplasma suis str. Illinois]
 gi|325989778|ref|YP_004249477.1| GTP-binding protein EngA [Mycoplasma suis KI3806]
 gi|323574863|emb|CBZ40523.1| GTP-binding protein EngA [Mycoplasma suis]
 gi|323651944|gb|ADX98026.1| GTP-binding protein engA [Mycoplasma suis str. Illinois]
          Length = 456

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 24/136 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSL NAL   +  IV+ I GTT D++   +   G    + D+ G ++ 
Sbjct: 195 KLGIVGKVNVGKSSLANALLSSNAIIVSPIEGTTVDLVEYSISHNGKTYLLIDSPGWKK- 253

Query: 281 DDIVEKEGIK----------RTFLEVENADLILLL----KEINS-----KKEISFPKNID 321
              ++KEG++          R+   ++ A+++L +    + IN       KEI F  N+ 
Sbjct: 254 ---MKKEGLRNEELDHLCWVRSKKAIKAANILLFVIDPSQPINHLDEKVAKEI-FESNLP 309

Query: 322 FIFIGTKSDLYSTYTE 337
            + +  K DL S + +
Sbjct: 310 VVIVANKWDLMSYHPD 325


>gi|213422212|ref|ZP_03355278.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 32

 Score = 44.3 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/30 (70%), Positives = 24/30 (80%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           K+VI G  NAGKSSL NALA ++ AIVTDI
Sbjct: 2   KVVIAGRPNAGKSSLLNALAGREAAIVTDI 31


>gi|170760642|ref|YP_001788927.1| GTP-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169407631|gb|ACA56042.1| GTP-binding protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 397

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 16/126 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I  +G +N+GKSSL NA+  +D++IV+ I GTT D ++  ++      V  +DTAG
Sbjct: 8   NRIHITFIGKTNSGKSSLMNAIIGQDISIVSSIEGTTTDPVSKAMEFIPLGPVLFTDTAG 67

Query: 277 IRETDDI----VEK--EGIKRT-----FLEVENADLILLLKEINSKKEISFPKNIDFIFI 325
           + +   +    +EK    + RT      +  E+ D+ L  K IN  K+    +NI +I +
Sbjct: 68  LEDNTKLGKMRIEKTLNTLLRTDFAVYVMSAEDIDINLYEKTINKFKK----QNISYITV 123

Query: 326 GTKSDL 331
             K D+
Sbjct: 124 INKMDI 129


>gi|298674508|ref|YP_003726258.1| GTP-binding protein HflX [Methanohalobium evestigatum Z-7303]
 gi|298287496|gb|ADI73462.1| GTP-binding protein HflX [Methanohalobium evestigatum Z-7303]
          Length = 418

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 2/96 (2%)

Query: 219 GYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           G+ +V L G++NAGKS+LFN +  +DV  V D+  TT   +T  L+L G  V ++DT G 
Sbjct: 189 GFSLVALAGYTNAGKSTLFNTIVDEDVR-VEDMLFTTLSPVTRSLNLGGRHVLLTDTVGF 247

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            E       +  + T  E+   D+ILL+ ++    E
Sbjct: 248 IEDLPHWMIDAFRSTLDEIFLTDVILLVVDVAEDAE 283


>gi|322380637|ref|ZP_08054789.1| GTP-binding protein Era [Helicobacter suis HS5]
 gi|321146959|gb|EFX41707.1| GTP-binding protein Era [Helicobacter suis HS5]
          Length = 311

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-----IDLDLEGYLVKISDTAG 276
           I ++G  NAGKS+L NAL  + + +++     TR +L      +  D+E  +V + DT G
Sbjct: 22  IALIGRPNAGKSTLINALVYERLCLISHKANATRKILKAIVPYMQGDIECQMVFL-DTPG 80

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           I +   ++ +  IK+    +E+ DL + L  I+   E
Sbjct: 81  ICKPTKLLNQAMIKQIRHALESCDLAIFLASIHDSPE 117


>gi|317154877|ref|YP_004122925.1| GTP-binding protein Era [Desulfovibrio aespoeensis Aspo-2]
 gi|316945128|gb|ADU64179.1| GTP-binding protein Era [Desulfovibrio aespoeensis Aspo-2]
          Length = 302

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L  + VAIV+  P TTR+ ++  L  +   V   DT GI +  
Sbjct: 7   VALIGPPNAGKSTLMNQLLGQKVAIVSPRPQTTRNRISGILSTDEAQVVFLDTPGIHQLR 66

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             + +  ++  +  +  AD++++L
Sbjct: 67  GKMNRFLLEAAWSALAGADVVVVL 90


>gi|83815627|ref|YP_446187.1| GTP-binding protein Era [Salinibacter ruber DSM 13855]
 gi|294508113|ref|YP_003572171.1| GTP-binding protein [Salinibacter ruber M8]
 gi|83757021|gb|ABC45134.1| GTP-binding protein Era [Salinibacter ruber DSM 13855]
 gi|294344441|emb|CBH25219.1| GTP-binding protein [Salinibacter ruber M8]
          Length = 304

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAG 276
           +GY + I+G  N GKS+L NAL  + ++IVT  P TTR  VL I    E   + + DT G
Sbjct: 17  SGY-VAIVGKPNVGKSTLMNALLGEKLSIVTKKPQTTRHRVLGIHSGPEHQAIFL-DTPG 74

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           I E    + +  + +    + +ADL+L L E
Sbjct: 75  IIEPRYALHETMMGQVQGAIRDADLLLFLHE 105


>gi|172057117|ref|YP_001813577.1| GTP-binding proten HflX [Exiguobacterium sibiricum 255-15]
 gi|171989638|gb|ACB60560.1| GTP-binding proten HflX [Exiguobacterium sibiricum 255-15]
          Length = 413

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 22/194 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I ++G++NAGKS++FN L   D     ++  T  D LT  LDL EG  + ++DT G  
Sbjct: 199 FQIALVGYTNAGKSTIFNRLTNADTYEKNELFATL-DPLTRQLDLPEGGQILLTDTVGF- 256

Query: 279 ETDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF------------ 324
              D+  K     + T  EV  ADLIL + + +S+  ++  +  + +             
Sbjct: 257 -IQDLPTKLIAAFRSTLEEVLEADLILHVIDASSEHYLNQMQTTNDVLDELGAGDIPQLE 315

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           +  K D  +        LIS+     ++ L  +I+  +S+  + L   IP H    Y+ +
Sbjct: 316 VFNKKDQLTHLFSGGKLLISALDPADIDRLTVEIEKAISDILEYLEIRIPVHAFAHYNPA 375

Query: 385 QTVRYLEMASLNEK 398
           + V    M +L E+
Sbjct: 376 KEV----MMNLTEQ 385


>gi|146320205|ref|YP_001199916.1| GTP-binding protein YqeH [Streptococcus suis 98HAH33]
 gi|253751231|ref|YP_003024372.1| GTP-binding protein [Streptococcus suis SC84]
 gi|253753132|ref|YP_003026272.1| GTP-binding protein [Streptococcus suis P1/7]
 gi|253754955|ref|YP_003028095.1| GTP-binding protein [Streptococcus suis BM407]
 gi|330832202|ref|YP_004401027.1| GTP-binding protein YqeH [Streptococcus suis ST3]
 gi|145691011|gb|ABP91516.1| Predicted GTPase [Streptococcus suis 98HAH33]
 gi|251815520|emb|CAZ51100.1| GTP-binding protein [Streptococcus suis SC84]
 gi|251817419|emb|CAZ55157.1| GTP-binding protein [Streptococcus suis BM407]
 gi|251819377|emb|CAR44789.1| GTP-binding protein [Streptococcus suis P1/7]
 gi|292557796|gb|ADE30797.1| GTP-binding protein [Streptococcus suis GZ1]
 gi|319757506|gb|ADV69448.1| GTP-binding protein YqeH [Streptococcus suis JS14]
 gi|329306425|gb|AEB80841.1| GTP-binding protein YqeH [Streptococcus suis ST3]
          Length = 368

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 15/112 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+L NA+ +     KDV   +  PGTT D + I LD   Y   I
Sbjct: 161 RKGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSY---I 217

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
            DT GI     +         +L  +N   I   KEI  K     P+   F+
Sbjct: 218 YDTPGIIHRHQMAH-------YLTAKNLKYISPRKEIKPKTYQLNPEQTLFL 262


>gi|89895851|ref|YP_519338.1| hypothetical protein DSY3105 [Desulfitobacterium hafniense Y51]
 gi|89335299|dbj|BAE84894.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 303

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 29/175 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L  + + I++D P TTR+ +   L  E   +   DT G
Sbjct: 11  RSGF-VTVVGRPNAGKSTLLNQLLGQKILIMSDKPQTTRNKIHCILTEERGQIVFLDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFP-----KN 319
           I +    + +  +      +   DLIL + +  ++            K +  P       
Sbjct: 70  IHKPKHKLGEFMVDSALESLREVDLILYMVDTTAEFGAGEEYILENLKHVKTPCILLLNK 129

Query: 320 IDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLP 370
           ID I       L   Y+   D L    IS+ TGE  +EL+  I       FK++P
Sbjct: 130 IDLIEKDKLLKLIKDYSALKDFLAILPISAKTGENKDELLKLI-------FKEMP 177


>gi|223932251|ref|ZP_03624255.1| Nitric-oxide synthase [Streptococcus suis 89/1591]
 gi|223899232|gb|EEF65589.1| Nitric-oxide synthase [Streptococcus suis 89/1591]
          Length = 368

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 15/112 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+L NA+ +     KDV   +  PGTT D + I LD   Y   I
Sbjct: 161 RKGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSY---I 217

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
            DT GI     +         +L  +N   I   KEI  K     P+   F+
Sbjct: 218 YDTPGIIHRHQMAH-------YLTAKNLKYISPRKEIKPKTYQLNPEQTLFL 262


>gi|285017649|ref|YP_003375360.1| GTP-binding protein [Xanthomonas albilineans GPE PC73]
 gi|283472867|emb|CBA15372.1| probable gtp-binding protein [Xanthomonas albilineans]
          Length = 207

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +G+++   G SNAGKSS  NAL +++ +A V+  PG T+ ++   +  E YLV +
Sbjct: 24  DGWEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQVQPERYLVDL 78


>gi|251781782|ref|YP_002996084.1| GTP-binding protein YqeH [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390411|dbj|BAH80870.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 372

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + ++G +N GKS+L NA+ +     KDV   +  PGTT D + I LD   +   
Sbjct: 160 LRNGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSF--- 216

Query: 271 ISDTAGI 277
           I DT GI
Sbjct: 217 IFDTPGI 223


>gi|150391794|ref|YP_001321843.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF]
 gi|149951656|gb|ABR50184.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 25/39 (64%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           N   I I G  N GKSSL NAL  +D+A+V+ + GTT D
Sbjct: 8   NRLHIAIFGRRNVGKSSLINALTDQDIAVVSQVAGTTTD 46


>gi|302339894|ref|YP_003805100.1| small GTP-binding protein [Spirochaeta smaragdinae DSM 11293]
 gi|301637079|gb|ADK82506.1| small GTP-binding protein [Spirochaeta smaragdinae DSM 11293]
          Length = 414

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           I I G  NAGKSS+ NAL K+ V+IV+D  GTT D +   ++L     V   DTAGI
Sbjct: 12  IGIFGKRNAGKSSILNALTKQQVSIVSDQAGTTTDPVEKPMELLPLGPVLFIDTAGI 68


>gi|163867993|ref|YP_001609197.1| GTP-binding protein Era [Bartonella tribocorum CIP 105476]
 gi|161017644|emb|CAK01202.1| GTP-binding protein Era [Bartonella tribocorum CIP 105476]
          Length = 303

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 38/194 (19%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISD 273
           R+G+ +V++G  NAGKS+L N L    V+IVT    TTR +   + I  D++  LV   D
Sbjct: 10  RSGF-VVLIGMPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLIRGIVIHDDVQIVLV---D 65

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG------- 326
           T G+      +E+  +   +   ++AD++L+L +  S       + +D +          
Sbjct: 66  TPGVFRPHKRLERAMVSAAWGGAKSADVLLVLIDAQSGLSDEVDRMLDIVNTMKQEKVLV 125

Query: 327 -------TKSDLYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   KS L +  T+  +        +IS+  G G ++L++     LSN  ++ P+ 
Sbjct: 126 LNKVDTVVKSSLLALTTKINERVKFAQTFMISALNGSGCKDLLHA----LSNMMQEGPWY 181

Query: 373 IPSHK------RHL 380
            P  +      RHL
Sbjct: 182 YPEDQISDMPMRHL 195


>gi|119356257|ref|YP_910901.1| GTP-binding protein Era [Chlorobium phaeobacteroides DSM 266]
 gi|119353606|gb|ABL64477.1| GTP-binding protein Era [Chlorobium phaeobacteroides DSM 266]
          Length = 305

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           VI+G  NAGKS+L N L    ++IVT  P TTR  +T     +   +   DT GI +   
Sbjct: 12  VIIGAPNAGKSTLLNKLLDYKLSIVTPKPQTTRKRITGIYHKDQCQIIFLDTPGIMKPQQ 71

Query: 283 IVEKEGIKRTFLEVENADLILLL 305
            + +  ++ T   +++AD++L L
Sbjct: 72  KLHESMLEITRATLKDADVVLAL 94


>gi|83953588|ref|ZP_00962309.1| GTP-binding protein HflX [Sulfitobacter sp. NAS-14.1]
 gi|83841533|gb|EAP80702.1| GTP-binding protein HflX [Sulfitobacter sp. NAS-14.1]
          Length = 412

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 27/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +   DV +  D+   T D     L L +G  + +SDT G    
Sbjct: 194 VALVGYTNAGKSTLFNRMTGADV-MAKDMLFATLDPTMRSLVLPDGPEIILSDTVGFISD 252

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYS-TYTE 337
                    + T  EV  AD+I  +++I+  +  S  +N+  I   +G   D  S     
Sbjct: 253 LPTELVAAFRATLEEVLAADIICHVRDISHAETESQARNVRDILTSLGVPKDTRSFEVWN 312

Query: 338 EYDHL--------------------ISSFTGEGLEELINKIKSILSNKFK--KLPFSIPS 375
           + D L                    IS+ TGEGLEEL   I   L    +  +L  +   
Sbjct: 313 KLDQLDDDRAAAVRARAQRDDSVLAISAITGEGLEELQAVIAEALQGAVREAELTLAFAD 372

Query: 376 HKRHLYHLSQTV 387
            K+  +   Q V
Sbjct: 373 GKKRAWLFEQDV 384


>gi|332297854|ref|YP_004439776.1| ferrous iron transport protein B [Treponema brennaborense DSM
           12168]
 gi|332180957|gb|AEE16645.1| ferrous iron transport protein B [Treponema brennaborense DSM
           12168]
          Length = 714

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           YKI + G+ N GK++LFN L   +   V + PG T  V   +  L+GY  V + D  GI 
Sbjct: 3   YKIALAGNPNCGKTTLFNVLTGSN-QFVGNWPGVT--VEKKEGKLKGYTDVTVMDLPGIY 59

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
                 ++E + R +L  E  D+IL
Sbjct: 60  SLSPYTQEEVVSRNYLVNERPDVIL 84


>gi|154498351|ref|ZP_02036729.1| hypothetical protein BACCAP_02340 [Bacteroides capillosus ATCC
           29799]
 gi|150272662|gb|EDM99840.1| hypothetical protein BACCAP_02340 [Bacteroides capillosus ATCC
           29799]
          Length = 297

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI ++G  I I+G  N GKS+L NAL  + +AIVT+ P TTR+ +   L+         D
Sbjct: 2   EIKKSGM-IAIVGRPNVGKSTLTNALVGEKIAIVTNKPQTTRNRICAVLNRGECQFVFMD 60

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNID 321
           T G+      +    +K     V + D ++LL E            I   K +  P  + 
Sbjct: 61  TPGLHRARTRLGDYMVKVVRDSVADVDAVMLLVEPIPHVGGPEEELIERIKALGVPSVLV 120

Query: 322 FIFIGT-KSD----LYSTYTEE--YDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              I T K D    +   Y E+  +D +  IS+   EGLE+L+  +   L    +  P  
Sbjct: 121 INKIDTVKKDELLAVMQAYGEKHSFDAILPISAKNSEGLEDLLKVLGEFLPEGPQLFPED 180

Query: 373 IPSHKRHLYHLSQTVR 388
           + + +      ++ VR
Sbjct: 181 MVTDQPERQVCAEIVR 196


>gi|94993651|ref|YP_601749.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS10750]
 gi|94547159|gb|ABF37205.1| GTP-binding protein [Streptococcus pyogenes MGAS10750]
          Length = 372

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + ++G +N GKS+L NA+ +     KDV   +  PGTT D + I LD   +   
Sbjct: 160 LRNGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSF--- 216

Query: 271 ISDTAGI 277
           I DT GI
Sbjct: 217 IFDTPGI 223


>gi|289547931|ref|YP_003472919.1| ribosome biogenesis GTP-binding protein YsxC [Thermocrinis albus
           DSM 14484]
 gi|289181548|gb|ADC88792.1| ribosome biogenesis GTP-binding protein YsxC [Thermocrinis albus
           DSM 14484]
          Length = 171

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +V++G SN GKSSL N L  K V  V+  PG TR V  I    + YLV +      R + 
Sbjct: 10  VVLVGRSNVGKSSLINMLLGKKVVAVSKDPGRTRRVTFIPFGEKVYLVDVPGYGYARVSH 69

Query: 282 DIVEKEGIKRTFLE 295
              E+E  +R   E
Sbjct: 70  R--EREAWRRMMEE 81


>gi|269120434|ref|YP_003308611.1| GTP-binding protein HSR1-related protein [Sebaldella termitidis
           ATCC 33386]
 gi|268614312|gb|ACZ08680.1| GTP-binding protein HSR1-related protein [Sebaldella termitidis
           ATCC 33386]
          Length = 379

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           V+LG +N GKSS  N+L +KD + ++  PGTT  + +I   ++G  +KI DT G+
Sbjct: 164 VVLGVTNTGKSSFMNSLMEKDKSTISKYPGTT--LKSIKNKIDGTDIKIIDTPGL 216


>gi|19745428|ref|NP_606564.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS8232]
 gi|71902919|ref|YP_279722.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS6180]
 gi|139474400|ref|YP_001129116.1| GTP-binding protein YqeH [Streptococcus pyogenes str. Manfredo]
 gi|306827997|ref|ZP_07461264.1| ribosome biogenesis GTPase YqeH [Streptococcus pyogenes ATCC 10782]
 gi|19747540|gb|AAL97063.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
 gi|71802014|gb|AAX71367.1| GTP-binding protein [Streptococcus pyogenes MGAS6180]
 gi|134272647|emb|CAM30914.1| GTP-binding protein [Streptococcus pyogenes str. Manfredo]
 gi|304429916|gb|EFM32958.1| ribosome biogenesis GTPase YqeH [Streptococcus pyogenes ATCC 10782]
 gi|323126594|gb|ADX23891.1| GTP-binding protein YqeH [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 372

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + ++G +N GKS+L NA+ +     KDV   +  PGTT D + I LD   +   
Sbjct: 160 LRNGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSF--- 216

Query: 271 ISDTAGI 277
           I DT GI
Sbjct: 217 IFDTPGI 223


>gi|300741536|ref|ZP_07071557.1| GTP-binding protein Era [Rothia dentocariosa M567]
 gi|311113629|ref|YP_003984851.1| GTP-binding protein Era [Rothia dentocariosa ATCC 17931]
 gi|300380721|gb|EFJ77283.1| GTP-binding protein Era [Rothia dentocariosa M567]
 gi|310945123|gb|ADP41417.1| GTP-binding protein Era [Rothia dentocariosa ATCC 17931]
          Length = 372

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +Q    E  R G+ + ++G  NAGKS+L NAL  + VAI +  P TTR  +   +  + Y
Sbjct: 9   AQPAFPEHYRAGF-VSLVGRPNAGKSTLTNALVGQKVAITSSRPQTTRHTIRGIVHRDDY 67

Query: 268 LVKISDTAGI 277
            + + DT GI
Sbjct: 68  QLILVDTPGI 77


>gi|157165568|ref|YP_001466814.1| GTP-binding protein Era [Campylobacter concisus 13826]
 gi|189037252|sp|A7ZDF6|ERA_CAMC1 RecName: Full=GTPase Era
 gi|112801332|gb|EAT98676.1| GTP-binding protein Era [Campylobacter concisus 13826]
          Length = 289

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDT 274
           +++G+ + I+G +NAGKSS  NAL  + +AIV+     TR  +  I ++ E  ++  +DT
Sbjct: 1   MKSGF-VSIIGRTNAGKSSFLNALLNEKIAIVSHKQNATRRKINGIVMNGEDQII-FTDT 58

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
            G+ E++  + +  I +    + + DLI+ L  I+
Sbjct: 59  PGLHESNKAINQLLISQAIKSMGDCDLIVFLAPIH 93


>gi|221132207|ref|XP_002155788.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 321

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 10/103 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           K+ ILG  NAGKS+L NA     V+ V++I  TTR V     ++    +  +DT GI   
Sbjct: 22  KVAILGAPNAGKSTLINAAVGSRVSAVSEIKHTTRTVANGIKNIGNCQIIFTDTPGIVSF 81

Query: 278 ----RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
               R   D     G +R      +AD++ ++ ++ SKK  +F
Sbjct: 82  EEGHRLNMDRAHLRGPRRV---AGSADMLAIITDVASKKTRNF 121


>gi|314933767|ref|ZP_07841132.1| ribosome biogenesis GTPase YqeH [Staphylococcus caprae C87]
 gi|313653917|gb|EFS17674.1| ribosome biogenesis GTPase YqeH [Staphylococcus caprae C87]
          Length = 366

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RN   + ++G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++  
Sbjct: 157 VRNNEDVYVVGTTNVGKSTLINKLIEISVGEKDVVTTSRFPGTTLDMIDIPLDETTFMY- 215

Query: 271 ISDTAGI 277
             DT GI
Sbjct: 216 --DTPGI 220


>gi|303230622|ref|ZP_07317372.1| hydrogenase maturation GTPase HydF [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514677|gb|EFL56669.1| hydrogenase maturation GTPase HydF [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 425

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I   G  NAGKS+L N L  + V++V+++ GTT D ++  ++ L    V I+DTAG
Sbjct: 8   NRIHIGFFGRCNAGKSTLINMLTDQPVSLVSEVAGTTTDPVSKSMEILPLGPVVITDTAG 67

Query: 277 IRETDDI 283
           I +T ++
Sbjct: 68  IDDTSEL 74


>gi|189424844|ref|YP_001952021.1| ferrous iron transporter B [Geobacter lovleyi SZ]
 gi|189421103|gb|ACD95501.1| ferrous iron transport protein B [Geobacter lovleyi SZ]
          Length = 713

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G+ NAGKS+L NA+A   +  V + PG T +      D++G  +++ D  G     
Sbjct: 9   VAVAGNPNAGKSTLINAIAGSRLH-VGNWPGVTVEKKEALFDVDGRSIRLVDLPGCYSLS 67

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
              ++E I R +L  E  DLI+
Sbjct: 68  PYSQEEIITRDYLVTEKPDLII 89


>gi|320537379|ref|ZP_08037334.1| GTP-binding protein Era [Treponema phagedenis F0421]
 gi|320145844|gb|EFW37505.1| GTP-binding protein Era [Treponema phagedenis F0421]
          Length = 295

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R+G  + I+G  +AGKS+  N    + V+IV+DIP TTR+ +   ++     +   DT 
Sbjct: 1   MRSGI-VTIIGRPSAGKSTFLNTACGEKVSIVSDIPQTTRNAVRGIVNTNKGQIVFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           G   ++    K+  + T  ++  AD IL L  ++S KE
Sbjct: 60  GYHASEKKFNKQLQEITCAKLAEADAILYL--VDSSKE 95


>gi|118444546|ref|YP_877567.1| GTP-binding protein [Clostridium novyi NT]
 gi|118135002|gb|ABK62046.1| GTP-binding protein [Clostridium novyi NT]
          Length = 396

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 2/100 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   IV  G++N+GKSS+ NA+  +++++V+ + GTT D ++  ++L  +  V   DTAG
Sbjct: 8   NRKHIVFYGNTNSGKSSILNAIIGQEISLVSSVEGTTTDPVSKAMELLPFGPVLFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           I +  ++     +++T   +   D  + + +IN+  E  +
Sbjct: 68  INDNSELGSLR-VEKTLKTLNKTDFAIYVMDINNIDENQY 106


>gi|295396781|ref|ZP_06806916.1| ribosome-associated GTPase EngA [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294970365|gb|EFG46305.1| ribosome-associated GTPase EngA [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 503

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKS+L N +  +  A+V D+PG TRD ++      G  + + DT G
Sbjct: 70  LAIVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYTAHWAGRDITLVDTGG 124



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           ++ ++G  N GKSSL N L   +  +V ++ GTTRD +   + L     +  DTAGIR+ 
Sbjct: 244 RVALIGRPNVGKSSLLNRLVGSERVMVDNVAGTTRDPVDELVVLGDRQWRFVDTAGIRKR 303

Query: 280 --TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
                  +     RT   +E A++ L+L E + 
Sbjct: 304 ARQSSGADYYAALRTQTALERAEVALVLLEADQ 336


>gi|167749119|ref|ZP_02421246.1| hypothetical protein EUBSIR_00063 [Eubacterium siraeum DSM 15702]
 gi|167657918|gb|EDS02048.1| hypothetical protein EUBSIR_00063 [Eubacterium siraeum DSM 15702]
          Length = 419

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 20/174 (11%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI--RET 280
           I+G++NAGKS+L NAL    V +  D    T D+ +  ++L +G  + + DT G+  R  
Sbjct: 210 IVGYTNAGKSTLLNALTGAGV-LAEDKLFATLDLTSRAIELPDGRSLTLVDTVGLIRRLP 268

Query: 281 DDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEISFP-------KNIDFIFIGTK 328
             +V  E  K T  E  +AD+IL +      E   K + +           I  I +  K
Sbjct: 269 HHLV--EAFKSTLEEAASADIILHVCDASDPEAREKAQTTLSLLSELGCGEIPVITVLNK 326

Query: 329 SDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            D   Y     E   +IS+  G G +EL+  I   L++K  ++   IP  K  L
Sbjct: 327 CDKLDYELPPAENTVMISAKNGTGFDELLKAISDNLTDKVSRMEMLIPYDKSGL 380


>gi|291279472|ref|YP_003496307.1| GTP-binding protein Era [Deferribacter desulfuricans SSM1]
 gi|290754174|dbj|BAI80551.1| GTP-binding protein Era [Deferribacter desulfuricans SSM1]
          Length = 297

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 5/109 (4%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +N +K   + I+G  N GKS+L N L  + V+I+++ P TTR  +      E Y +   D
Sbjct: 3   KNKFKSGFVSIIGRPNVGKSTLLNRLLGEKVSIISNKPNTTRTNIQGIKTGEDYQIIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--KKEISFPKNI 320
           T GI    D + +  ++     ++  D++ L+ E +    KE++F  N+
Sbjct: 63  TPGIHNAKDKINRLMVQNALDSLDMVDIVYLMVEPDEFIGKEMNFILNV 111


>gi|291278852|ref|YP_003495687.1| ferrous iron transport protein B [Deferribacter desulfuricans SSM1]
 gi|290753554|dbj|BAI79931.1| ferrous iron transport protein B [Deferribacter desulfuricans SSM1]
          Length = 645

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 26/176 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           YK++++G+ N GKS+LF  L KK  A V++ PGTT  +     ++   + V+  DT G  
Sbjct: 6   YKVLLVGNPNVGKSALFYNLTKK-YASVSNYPGTTVSIFKGKTNIGPHHEVEFIDTPGFY 64

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--FPKNIDFIFIGTKSDLYSTYT 336
             + I E+E + +  +   + D IL    +   K I+   P    FI  G  + L     
Sbjct: 65  NFNTITEEEKVTKDIILQNDYDCIL---HVVDAKNIARMLPLTFQFIEAGLPTILVLNMY 121

Query: 337 EEYD---------HL----------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           +E +         HL           ++   +G E L+ +I S++  ++   P +I
Sbjct: 122 DELECQGMEINITHLEHDLGIPVVKTAAIKNKGTENLMARILSVVEGRYNFQPINI 177


>gi|242281264|ref|YP_002993393.1| GTP-binding protein Era [Desulfovibrio salexigens DSM 2638]
 gi|242124158|gb|ACS81854.1| GTP-binding protein Era [Desulfovibrio salexigens DSM 2638]
          Length = 305

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N    + VAIV+  P TTR+ ++  L  E   V   DT GI    
Sbjct: 10  VALIGPPNAGKSTLMNHYLGQKVAIVSPKPQTTRNRISGILSDENSQVVFLDTPGIHRMR 69

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             + +  +   +  + NAD I++L
Sbjct: 70  GKMNRFLLDSAWEALGNADAIVVL 93


>gi|15669110|ref|NP_247915.1| GTP-binding protein homologue YphC [Methanocaldococcus jannaschii
           DSM 2661]
 gi|3024931|sp|Q58330|Y920_METJA RecName: Full=Uncharacterized protein MJ0920
 gi|1591593|gb|AAB98924.1| GTP-binding protein homologue (yphC) [Methanocaldococcus jannaschii
           DSM 2661]
          Length = 185

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 14/98 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR----------DVLTIDLDLEGYLV 269
           +KI I+G  NAGKSS+ NAL  K V++V+++ GTT+           +  I  + E   +
Sbjct: 6   FKIAIIGPENAGKSSIMNALFGKYVSLVSEVGGTTKMPIKRYWGKLKIGRIKEEPEFVNL 65

Query: 270 KISDTAGIRETDD----IVEKEGIKRTFLEVENADLIL 303
              D  G+  T D    I+  + +++TF E+ ++D+I+
Sbjct: 66  VFVDLGGLYTTTDKQSPIMTPKVLEKTFEEINDSDMII 103


>gi|329947103|ref|ZP_08294479.1| GTP-binding protein HflX [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526280|gb|EGF53297.1| GTP-binding protein HflX [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 520

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 92/226 (40%), Gaps = 34/226 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L +  +    A+   +  T R   T     EG    ++DT G 
Sbjct: 299 VAIAGYTNAGKSSLMNRLTEAGIMVEDALFATLDPTVRRAETS----EGRTYTLTDTVGF 354

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEI--SFPKNIDF--IF 324
                    E  + T  EV  ADL+L          L ++ + + +    P  +D   + 
Sbjct: 355 VRNLPHELIEAFRSTLEEVAGADLVLHVVDAAHPDPLSQVAAVRTVLSEIPDALDVPELI 414

Query: 325 IGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +  K+DL    T             +S+ TGEG+EEL  +I+ +L +    +   +P  +
Sbjct: 415 VLNKTDLADAVTLAALRTRLPGSVAVSARTGEGIEELRTRIERMLPHPQVSIDVVVPYSR 474

Query: 378 RHL---YHLS---QTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
             L    H      TV Y+E  +      G  + AE    A  S+G
Sbjct: 475 GDLVSRVHAEGEIDTVDYVETGTRVVARVGSALAAEIEDAAGASVG 520


>gi|291556831|emb|CBL33948.1| GTP-binding protein HflX [Eubacterium siraeum V10Sc8a]
          Length = 419

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 20/174 (11%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI--RET 280
           I+G++NAGKS+L NAL    V +  D    T D+ +  ++L +G  + + DT G+  R  
Sbjct: 210 IVGYTNAGKSTLLNALTGAGV-LAEDKLFATLDLTSRAIELPDGRSLTLVDTVGLIRRLP 268

Query: 281 DDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEISFP-------KNIDFIFIGTK 328
             +V  E  K T  E  +AD+IL +      E   K + +           I  I +  K
Sbjct: 269 HHLV--EAFKSTLEEAASADIILHVCDASDPEAREKAQTTLSLLSELGCGEIPVITVLNK 326

Query: 329 SDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            D   Y     E   +IS+  G G +EL+  I   L++K  ++   IP  K  L
Sbjct: 327 CDKLDYELPPAENTVMISAKNGTGFDELLKAISDNLTDKVSRMEMLIPYDKSGL 380


>gi|259416757|ref|ZP_05740677.1| GTP-binding protein HflX [Silicibacter sp. TrichCH4B]
 gi|259348196|gb|EEW59973.1| GTP-binding protein HflX [Silicibacter sp. TrichCH4B]
          Length = 423

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 30/191 (15%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y IV L G++NAGKS+LFN L   DV +  D+   T D     ++L +G  V +SDT G 
Sbjct: 202 YPIVALVGYTNAGKSTLFNRLTGADV-MAKDMLFATLDPTMRRVELPDGPEVILSDTVGF 260

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSD--LYS 333
                       + T  EV  AD+IL +++I+     +  ++++ I   +G   D  L  
Sbjct: 261 ISDLPTELVASFRATLEEVLAADVILHVRDISHSDTENQAEDVEQILNSLGVDEDRALIE 320

Query: 334 TYT-------EEYD------------HLISSFTGEGLEELIN----KIKSILSNKFKKLP 370
            +        E+ D            + IS+ TGEGL EL+N    K++ +  ++   L 
Sbjct: 321 VWNKIDQLSEEDADACRQRAERSEELYAISAITGEGLPELLNDIALKLQGVRHHEVLHLD 380

Query: 371 FSIPSHKRHLY 381
           FS    +  L+
Sbjct: 381 FSQGKQRAWLF 391


>gi|238924233|ref|YP_002937749.1| GTP-binding protein Era [Eubacterium rectale ATCC 33656]
 gi|238875908|gb|ACR75615.1| GTP-binding protein Era [Eubacterium rectale ATCC 33656]
          Length = 303

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 37/176 (21%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + +AI ++ P TTR+ + T+  D+E   +   DT GI + 
Sbjct: 10  VTIIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVYTDMEKGQIVFLDTPGIHKA 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIGTK 328
            + + +  +      +   D++L L E            I   K+++ P     I I  K
Sbjct: 70  KNKLGEYMVNVAEKTLNEVDVVLWLVEPTNFIGAGEQHIIEQLKKVNTP----VILIINK 125

Query: 329 SDLY---------STYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371
            D            TY + +D       S+  G+  +++IN I       FK LP+
Sbjct: 126 VDTVEKEKVLEYIDTYRKVFDFAEIIPTSALRGQNTDDVINSI-------FKYLPY 174


>gi|255556681|ref|XP_002519374.1| GTP-binding protein enga, putative [Ricinus communis]
 gi|223541441|gb|EEF42991.1| GTP-binding protein enga, putative [Ricinus communis]
          Length = 635

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           ND + + S  ++ E  +   ++ I+G  N GKS+L N L +++  +V    G TRD +  
Sbjct: 315 NDATHYDSSSEVEEDSKLPMQLAIVGRPNVGKSTLLNTLLQEERVLVGPEVGLTRDSIRS 374

Query: 261 DLDLEGYLVKISDTAG 276
             D +G  + + DTAG
Sbjct: 375 QFDFQGRTIYLVDTAG 390



 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPG--TTRDVLTIDLDLEGYLVKISDTAGI 277
           ++I+G  N GKS+LFN L ++  A+V + P    TRD+      L     ++ D+AG+
Sbjct: 129 VIIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFRVLDSAGL 186


>gi|227549102|ref|ZP_03979151.1| HflX family GTP-binding protein [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078831|gb|EEI16794.1| HflX family GTP-binding protein [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 496

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 29/182 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           KI I G++NAGKSSL NA+    V +V D    T D  T    L +G  V ++DT G   
Sbjct: 270 KIAIAGYTNAGKSSLINAMTNAGV-LVEDALFATLDPSTRKAQLADGRNVVLTDTVGFVR 328

Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEI----------SFPKNI 320
                  E  K T  EV  ADL+L          LK+I +  ++          S P  I
Sbjct: 329 HLPTQLVEAFKSTLEEVTGADLMLHVVDGSDAFPLKQIEAVNKVLSDVTRESGESIPPEI 388

Query: 321 DFIFIGTKSD--LYSTYTEEYDH------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +    ++D  + +     +D+       +S+ TGEG+ EL  KI+  L++    +   
Sbjct: 389 VVVNKIDQADPVVLAELRHTFDNTGHDVVFVSAHTGEGIAELEGKIEMHLNSVEAHVQML 448

Query: 373 IP 374
           +P
Sbjct: 449 VP 450


>gi|84501097|ref|ZP_00999332.1| GTP-binding protein HflX [Oceanicola batsensis HTCC2597]
 gi|84391164|gb|EAQ03582.1| GTP-binding protein HflX [Oceanicola batsensis HTCC2597]
          Length = 424

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 35/172 (20%)

Query: 222 IVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G++NAGKS+LFN L       KD+   T  P   R    + L   G  V +SDT G
Sbjct: 206 VALVGYTNAGKSTLFNRLTGAEVLAKDMLFATLDPTMRR----VRLPNNGPEVILSDTVG 261

Query: 277 IRETDDIVEK--EGIKRTFLEVENADLILLLKEINSKK-------------EISFPKNID 321
                D+  +     + T  EV  ADLIL +++I+  +             ++  P+ + 
Sbjct: 262 F--ISDLPTQLVAAFRATLEEVLEADLILHIRDISHPEAEEQKADVEDILSDLGLPEEVP 319

Query: 322 FIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            + +  K D         L      +   +IS+ TG GL+ L++ ++  L  
Sbjct: 320 VLEVWNKVDRLPPEDAGALARRAERDGTFVISAVTGAGLDPLLDAVERTLDQ 371


>gi|227357012|ref|ZP_03841383.1| ATP/GTP-binding protein [Proteus mirabilis ATCC 29906]
 gi|227162815|gb|EEI47775.1| ATP/GTP-binding protein [Proteus mirabilis ATCC 29906]
          Length = 290

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 37/71 (52%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +L  +I     I ++G + AGKSSL NAL +  ++ V+D+ G TR      + +  + +
Sbjct: 24  NQLNYLINYSPTIGLMGKTGAGKSSLINALFQSSLSPVSDVSGCTRQAQRFSMTMNNHTL 83

Query: 270 KISDTAGIRET 280
              D  G+ E+
Sbjct: 84  TFVDLPGVGES 94


>gi|56696948|ref|YP_167310.1| GTP-binding protein HflX [Ruegeria pomeroyi DSS-3]
 gi|56678685|gb|AAV95351.1| GTP-binding protein HflX [Ruegeria pomeroyi DSS-3]
          Length = 424

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 80/199 (40%), Gaps = 36/199 (18%)

Query: 220 YKIVIL-GHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           Y IV L G++NAGKS+LFN L       KD+   T  P   R VL      +G  V +SD
Sbjct: 203 YPIVALVGYTNAGKSTLFNRLTGAEVMAKDMLFATLDPTMRRVVLP-----DGPEVILSD 257

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--------- 324
           T G             + T  EV  ADLI+ +++I+        ++++ I          
Sbjct: 258 TVGFISDLPTELVAAFRATLEEVLAADLIVHVRDIHHAATEEQARDVETILASLGVDEGR 317

Query: 325 ----IGTKSDLY----------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK-- 368
               +  K DL            T  +     +S+ TGEGLE L+  I   L+    +  
Sbjct: 318 PKFEVWNKVDLLDPDKRAALRERTARDPSLFAVSAVTGEGLESLLTAIAEALAETRSEAV 377

Query: 369 LPFSIPSHKRHLYHLSQTV 387
           L       KR  +  +Q V
Sbjct: 378 LTLGFADGKRRAWLFAQDV 396


>gi|322411127|gb|EFY02035.1| GTP-binding protein YqeH [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 372

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + ++G +N GKS+L NA+ +     KDV   +  PGTT D + I LD   +   
Sbjct: 160 LRNGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSF--- 216

Query: 271 ISDTAGI 277
           I DT GI
Sbjct: 217 IFDTPGI 223


>gi|312863524|ref|ZP_07723762.1| ribosome biogenesis GTPase YqeH [Streptococcus vestibularis F0396]
 gi|311101060|gb|EFQ59265.1| ribosome biogenesis GTPase YqeH [Streptococcus vestibularis F0396]
          Length = 372

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R G  + ++G +N GKS+L NA+ K     KD+   +  PGTT D + I LD   Y 
Sbjct: 158 EKLRKGRDVYVVGVTNVGKSTLINAIIKEITGDKDIITTSRFPGTTLDKIEIPLDDGTY- 216

Query: 269 VKISDTAGI 277
             I DT GI
Sbjct: 217 --IFDTPGI 223


>gi|224476705|ref|YP_002634311.1| GTP-binding protein YqeH [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421312|emb|CAL28126.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 366

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 19/148 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           RN   + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++   
Sbjct: 158 RNHEDVYIVGTTNVGKSTLINKLIEHSVGEKDVVTTSRFPGTTLDMIDIPLDENTFMF-- 215

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFIFIGTKS 329
            DT GI +   +      K     + N ++   + ++N  + + F     ID++  G + 
Sbjct: 216 -DTPGIIQEHQMTHYVSDKELKQIMPNKEIKQRVYQLNENQTLFFGGLARIDYVSGGKRP 274

Query: 330 ---------DLYSTYTEEYDHLISSFTG 348
                    +++ T TE+ D L  +  G
Sbjct: 275 LVCYFSNNLNIHRTKTEKADTLWQTQLG 302


>gi|189500921|ref|YP_001960391.1| GTP-binding protein Era [Chlorobium phaeobacteroides BS1]
 gi|189496362|gb|ACE04910.1| GTP-binding protein Era [Chlorobium phaeobacteroides BS1]
          Length = 306

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 80/196 (40%), Gaps = 27/196 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           GY + I+G  NAGKS+L N L    ++IVT  P TTR  +T     +   +   DT GI 
Sbjct: 10  GY-VAIIGPPNAGKSTLLNRLLNHKLSIVTPKPQTTRKKITGIYHSDRCQILFLDTPGIM 68

Query: 279 ETDDIVEKEGIKRTFLEVENADLI-------------------LLLKEI---NSKKEISF 316
           +    + +  +  T   ++ AD+I                   LL +E      K  I+ 
Sbjct: 69  KPMQELHQSMLTATRSTLKEADVIITMIPASKKNGLFDQDFTELLFREWLTNTGKPVIAA 128

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               DF+  G + +      E ++      +S+  G G ++LI  +  +L       P  
Sbjct: 129 LNKSDFLNAGEQEEALRIIKERWNPEKALAVSALKGSGTDDLIEALIPLLPASAPLYPED 188

Query: 373 IPSHKRHLYHLSQTVR 388
           I S     + +S+ +R
Sbjct: 189 ILSTAPERFFVSEIIR 204


>gi|16331223|ref|NP_441951.1| GTP-binding protein Era [Synechocystis sp. PCC 6803]
 gi|3334177|sp|Q55526|ERA_SYNY3 RecName: Full=GTPase Era
 gi|1001399|dbj|BAA10021.1| GTP-binding protein Era [Synechocystis sp. PCC 6803]
          Length = 315

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 3/99 (3%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           I Q   G   R+G+ + I+G  N GKS+L N L  + +AI + +  TTR+ L   +    
Sbjct: 13  IPQAPAG--FRSGF-VAIVGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLQGIITTPS 69

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             + + DT GI +    + +  +K     + + DL++ L
Sbjct: 70  SQIILLDTPGIHKPHHELGRVLVKNAIQAIHSVDLVVFL 108


>gi|315297595|gb|EFU56872.1| conserved hypothetical protein [Escherichia coli MS 16-3]
          Length = 246

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI-VEK 286
           S AGKSSL NAL + ++  V+D+   TR+V    L+  G+ + I+D  G+ E+ D   E 
Sbjct: 1   SGAGKSSLCNALFQGEITPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRDRDAEY 60

Query: 287 EGIKRTFLEVENADLILLLKEINSK 311
           E + R  L     DL+L L + + +
Sbjct: 61  EALYRDIL--PELDLVLWLIKADDR 83


>gi|170288692|ref|YP_001738930.1| ferrous iron transport protein B [Thermotoga sp. RQ2]
 gi|170176195|gb|ACB09247.1| ferrous iron transport protein B [Thermotoga sp. RQ2]
          Length = 669

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 70/167 (41%), Gaps = 27/167 (16%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI +   K+ + G  N GK+SLFNAL       V + PG T +        +GY + + D
Sbjct: 11  EISQKIVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLID 69

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLIL-------------LLKEI--NSKKEISFPK 318
             G          E I R +L   +ADL++             LL EI    KK I    
Sbjct: 70  LPGTYSLGYSSIDEKIARDYLLKGDADLVIVVADSVNPEQSLYLLLEILEMEKKVILAMT 129

Query: 319 NIDFI-FIGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKI 358
            ID    IG K D Y    E   HL       SS TGEGLEEL  KI
Sbjct: 130 AIDEAKKIGIKIDRY----ELQKHLGIPVVFTSSVTGEGLEELREKI 172


>gi|256375573|ref|YP_003099233.1| GTP-binding proten HflX [Actinosynnema mirum DSM 43827]
 gi|255919876|gb|ACU35387.1| GTP-binding proten HflX [Actinosynnema mirum DSM 43827]
          Length = 480

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 48/203 (23%)

Query: 199 LKNDISSHISQGKLGEIIRNGY------KIVILGHSNAGKSSLFNALAKKDV----AIVT 248
           L+ +I+S    G + E  R+G        + I G++NAGKSSL NAL    V    A+  
Sbjct: 230 LRREIAS---MGVIRETKRSGRVANAVPSVAIAGYTNAGKSSLLNALTSAGVLVQDALFA 286

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL---- 303
            +  TTR   T D    G    ++DT G +R     +  E  + T  EV +ADL++    
Sbjct: 287 TLDTTTRRTSTPD----GLPYTLTDTVGFVRHLPHQL-VEAFRSTLEEVADADLLIHVVD 341

Query: 304 ---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-------DH 341
                          ++ EI  K+E   P     + +  K D      +           
Sbjct: 342 GSDSMPEKQVAAVREVIGEIVEKREEPMPPE---LLVVNKVDAVDELVQARLRNLFPGSQ 398

Query: 342 LISSFTGEGLEELINKIKSILSN 364
           L+S+ +GEG+EEL   I  ++  
Sbjct: 399 LVSAHSGEGVEELRRVIAGLIPR 421


>gi|306821157|ref|ZP_07454773.1| GTP-binding protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550850|gb|EFM38825.1| GTP-binding protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 399

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 24/167 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I   G +N GKSSL N +  ++++IV++I GTT D +   +++ G     I DTAG  + 
Sbjct: 14  IAFFGRTNVGKSSLINKIVNQEISIVSEIRGTTTDPVQKAMEIHGIGATLIIDTAGFDDN 73

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF-----PKNIDFIFIGTKSD 330
             + EK  +++T   +   D+ +++   +       KE+S+      KNI ++ +  K D
Sbjct: 74  SKLGEKR-MEKTSHILNKTDIAVIVTTPDDIISDFSKELSWIEKIKEKNIPYLIVINKID 132

Query: 331 L----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
           L           +  T +   LIS     G+E+LI+ ++ I   KFK
Sbjct: 133 LSKDMESLKKRVTELTSKEVILISVKENIGIEDLISSLEIIC--KFK 177


>gi|217077570|ref|YP_002335288.1| small GTP-binding protein domain protein [Thermosipho africanus
           TCF52B]
 gi|217037425|gb|ACJ75947.1| small GTP-binding protein domain protein [Thermosipho africanus
           TCF52B]
          Length = 399

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  N GKSS  NAL  +DV+IV+++ GTT D +   ++L     V + DT G+ + 
Sbjct: 11  IAITGRRNVGKSSFMNALIGQDVSIVSNVAGTTTDPVFKSMELSPIGPVTLIDTPGLDDI 70

Query: 281 DDIVEK--EGIKRTFLEVENADLIL 303
            ++ +K  E  K+T    +   LI+
Sbjct: 71  GELGQKRIEKAKKTLYRADCGILIV 95


>gi|110597803|ref|ZP_01386086.1| Small GTP-binding protein domain:GTP-binding protein Era
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340528|gb|EAT59011.1| Small GTP-binding protein domain:GTP-binding protein Era
           [Chlorobium ferrooxidans DSM 13031]
          Length = 305

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 30/194 (15%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           +I+G  NAGKS+L N L    ++IVT  P TTR  +T     +   +   DT GI +   
Sbjct: 12  IIIGPPNAGKSTLLNELLDYKLSIVTPKPQTTRKKITGIYHNDKCQIIFLDTPGIMKPQQ 71

Query: 283 IVEKE--GIKRTFLEVENADLILLLKEINSKKEI-----------SF--PKNIDFIFIGT 327
            + +   GI R  L  ++AD+++ L   + KKE            S+  P     I +  
Sbjct: 72  KLHESMLGIIRETL--KDADIVIALLPYSGKKEFFDREFAEELFSSWLKPAGKKIIAVLN 129

Query: 328 KSDLYS-------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           KSDL +             T+       +S+  G  L  LI+ I+  L   +   P    
Sbjct: 130 KSDLVTEERQREAEAFVRKTWNPAAVLSVSALKGSNLPALIDTIQPYLPLNYPLYPEDTL 189

Query: 375 SHKRHLYHLSQTVR 388
           S     + +S+ +R
Sbjct: 190 STAPERFFVSEIIR 203


>gi|95930678|ref|ZP_01313412.1| GTP-binding protein Era [Desulfuromonas acetoxidans DSM 684]
 gi|95133330|gb|EAT14995.1| GTP-binding protein Era [Desulfuromonas acetoxidans DSM 684]
          Length = 303

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 22/167 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N +  + +AI  + P TTR+ +      +   V   DT G
Sbjct: 12  RSGF-VSIVGRPNVGKSTLLNQILGQKIAITANKPQTTRNRILGIHSEDNAQVLFLDTPG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
           I +    + +  + +        D+++ L E   +         ++    +I  + +  K
Sbjct: 71  IHKATGKLNQYMVDQALSACRGVDVVVFLVEATDRVGGGDDFILDVLAQSDIPVVLVINK 130

Query: 329 SDLY---------STYTEEYDH----LISSFTGEGLEELINKIKSIL 362
            DL          + Y E +D      +S+  G G+E L+  ++ +L
Sbjct: 131 VDLVEKDKLLPLIAQYAERFDFKEIIPLSALNGSGVERLVASVRDML 177


>gi|332527859|ref|ZP_08403896.1| GTP-binding proten HflX [Rubrivivax benzoatilyticus JA2]
 gi|332112436|gb|EGJ12229.1| GTP-binding proten HflX [Rubrivivax benzoatilyticus JA2]
          Length = 371

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDT 274
           R  +++ ++G++NAGKS+LFNAL K       D    T D  T  L L   G  V +SDT
Sbjct: 186 RGTFRVSLVGYTNAGKSTLFNALVKAKT-YAADQLFATLDTTTRSLWLGEAGMSVSLSDT 244

Query: 275 AG-IRETDDIVEK--EGIKRTFLEVENADLIL 303
            G IR   D+  K  E  + T  E  +ADL+L
Sbjct: 245 VGFIR---DLPHKLVEAFEATLREAADADLLL 273


>gi|68076099|ref|XP_679969.1| GTP-binding protein [Plasmodium berghei strain ANKA]
 gi|56500827|emb|CAH99774.1| GTP-binding protein, putative [Plasmodium berghei]
          Length = 264

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 73/167 (43%), Gaps = 30/167 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDL-------DLEGY-LVKI 271
           +I I G SN GKSSL NAL   ++VA  +  PG TR +   +L       DL GY   K+
Sbjct: 61  QIGIFGRSNVGKSSLINALMNYREVAQASKTPGRTRHLFIYNLLNHISVVDLPGYGFAKV 120

Query: 272 S----DTAGIRETDDIVEKEGIKRTFLEVENADL------ILLLKEINSKKEISFPKNID 321
           S    D   I   + + + + +KR    +E  +L      +LL        ++   KNI 
Sbjct: 121 SKNLRDNWSILIEEYLNKAKNLKRALCLIECTELFTPYDYVLL--------DMLIMKNIP 172

Query: 322 FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           F  I TK D      EE  H +       +E    K+K+   NK KK
Sbjct: 173 FQIIVTKID--KLKAEELHHAMVKIIS-IIENYKKKVKAFNENKHKK 216


>gi|322436559|ref|YP_004218771.1| GTP-binding protein Era [Acidobacterium sp. MP5ACTX9]
 gi|321164286|gb|ADW69991.1| GTP-binding protein Era [Acidobacterium sp. MP5ACTX9]
          Length = 352

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 17/115 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID---------LD 263
           R+G+ + I+G  NAGKS+L NAL  + +AIVT  P TTR     VL +          ++
Sbjct: 4   RSGF-VSIIGRPNAGKSTLLNALLGQKLAIVTHKPQTTRTRIHGVLEVPAKKKTKVGAIE 62

Query: 264 LEGY---LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             G+    + + DT GI + D  ++K  ++     +E+ + +L + ++  +  ++
Sbjct: 63  TAGHPAAQIVLVDTPGIHKPDTQLDKRMMQEVHDALESRNAVLFIVDVTHRLPVA 117


>gi|212638693|ref|YP_002315213.1| GTPase [Anoxybacillus flavithermus WK1]
 gi|212560173|gb|ACJ33228.1| GTPase [Anoxybacillus flavithermus WK1]
          Length = 306

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 34/190 (17%)

Query: 215 IIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +++ GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +      +   +  
Sbjct: 5   MVQEGYKSGFVAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIF 64

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKN 319
            DT GI +    +    +K     ++  DLIL +              I   K++  P  
Sbjct: 65  IDTPGIHKPKHKLGDFMVKVAQSALQEVDLILFMVNAVEGFGRGDEFIIERLKQVQTPV- 123

Query: 320 IDFIFIGTKSDLYS----TYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFK 367
             F+ I    +++        E+Y  L        IS+  G  +E L+ +IK+ L     
Sbjct: 124 --FLVINKIDEVHPDDLLPLIEQYRSLHSFAEVIPISALQGNNVETLLQQIKNYLPEG-- 179

Query: 368 KLPFSIPSHK 377
             P   P+H+
Sbjct: 180 --PQYYPAHQ 187


>gi|58584268|ref|YP_197841.1| GTP-binding protein Era [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58418584|gb|AAW70599.1| GTPase [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 294

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 7/103 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRET 280
           + I G  NAGKS+L N++  K +AIVT    TTR  +  I +  E  ++  +D+ GI   
Sbjct: 9   VTIAGLPNAGKSTLINSITGKKIAIVTPKVQTTRTQIRGIAIYNETQII-FTDSPGIFSA 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +  +EK  +K  +  ++  D+ILLL + +     S+ KNI+ I
Sbjct: 68  ETKLEKALVKSAWSAIKGDDVILLLIDAS-----SYLKNIERI 105


>gi|322516195|ref|ZP_08069128.1| GTP-binding protein [Streptococcus vestibularis ATCC 49124]
 gi|322125371|gb|EFX96726.1| GTP-binding protein [Streptococcus vestibularis ATCC 49124]
          Length = 372

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R G  + ++G +N GKS+L NA+ K     KD+   +  PGTT D + I LD   Y 
Sbjct: 158 EKLRKGRDVYVVGVTNVGKSTLINAIIKEITGDKDIITTSRFPGTTLDKIEIPLDDGTY- 216

Query: 269 VKISDTAGI 277
             I DT GI
Sbjct: 217 --IFDTPGI 223


>gi|228475982|ref|ZP_04060690.1| ribosome biogenesis GTPase YqeH [Staphylococcus hominis SK119]
 gi|314936283|ref|ZP_07843630.1| ribosome biogenesis GTPase YqeH [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269805|gb|EEK11285.1| ribosome biogenesis GTPase YqeH [Staphylococcus hominis SK119]
 gi|313654902|gb|EFS18647.1| ribosome biogenesis GTPase YqeH [Staphylococcus hominis subsp.
           hominis C80]
          Length = 366

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 12/80 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           RN   + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++   
Sbjct: 158 RNHQDVYIVGTTNVGKSTLINKLIEQSVGEKDVVTTSRFPGTTLDMIDIPLDENTFMY-- 215

Query: 272 SDTAGI----RETDDIVEKE 287
            DT GI    + T  + EKE
Sbjct: 216 -DTPGIIQAHQMTHYVTEKE 234


>gi|313202782|ref|YP_004041439.1| GTP-binding protein era [Paludibacter propionicigenes WB4]
 gi|312442098|gb|ADQ78454.1| GTP-binding protein Era [Paludibacter propionicigenes WB4]
          Length = 293

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 58/100 (58%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NAL  + ++I+T    TTR  +   ++ + + +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNALVGERISIITSKAQTTRHRILGIVNGDDFQIVYSDTPGVLKPNYR 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  +K +   + +AD++L + ++      S+ KN DF+
Sbjct: 69  LQESMLKFSRSALSDADVLLYVTDVFD----SYEKNEDFV 104


>gi|295092645|emb|CBK78752.1| iron-only hydrogenase maturation protein HydF [Clostridium cf.
           saccharolyticum K10]
          Length = 432

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 33/174 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL----------------TIDLDLE 265
           I   G  NAGKSSL NA   +D+A+V+D+ GTT D +                T  +D E
Sbjct: 14  ISFFGCRNAGKSSLLNAFTGQDLAVVSDVKGTTTDPVKKSMELLPLGPAVIIDTPGIDDE 73

Query: 266 GYL--VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           G L   ++  T  I    DI       +T +  E+ +L  L +E          K + ++
Sbjct: 74  GSLGGRRVRKTRQILNMTDIAVLVADSQTGIRKEDRELAALFQE----------KEVPYV 123

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTG--EGLEE---LINKIKSILSNKFKKLPFS 372
               K DL   +  +     ++ TG  EG+ E     N+  ++LS     LP S
Sbjct: 124 VAFNKCDLTENHIPDIYKEETNKTGAKEGVPEDRGTENREAAVLSGAAAVLPVS 177


>gi|271963792|ref|YP_003337988.1| GTP-binding family protein [Streptosporangium roseum DSM 43021]
 gi|270506967|gb|ACZ85245.1| GTP-binding family protein ; K03665 GTP-binding protein HflX
           [Streptosporangium roseum DSM 43021]
          Length = 494

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 20/176 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G++NAGKSSL N L    V +   +  T    +      EG L  ++DT G     
Sbjct: 272 VAIAGYTNAGKSSLLNRLTGAGVLVEDSLFATLDPTVRRAHTPEGRLFTLADTVGFVRHL 331

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKE----ISFPKNIDFIFIGTK 328
                E  + T  EV +ADLIL +          ++ + +E    I   ++I  I +  K
Sbjct: 332 PHQLVEAFRSTLEEVGDADLILHVVDGSHPDPESQLAAVREVVADIEGARDIPEIVVINK 391

Query: 329 SDLYS-------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +D+         T  E++  ++S+ TG G++EL+  I+  L    +++   +P  +
Sbjct: 392 ADVADPVVLAQLTAREKHTVVVSARTGAGIDELLAIIERELPRFDQEVRLLVPYQR 447


>gi|118580147|ref|YP_901397.1| GTP-binding protein EngA [Pelobacter propionicus DSM 2379]
 gi|171704446|sp|A1APR9|DER_PELPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|118502857|gb|ABK99339.1| small GTP-binding protein [Pelobacter propionicus DSM 2379]
          Length = 448

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+LFN L     AIV D PG TRD     ++       + DT G    T
Sbjct: 5   VALVGRPNVGKSTLFNRLLGHRRAIVDDTPGVTRDRNYALINRFEKPFILIDTGGFEPVT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           +D + ++  +++ L +E AD+I+ + +  S
Sbjct: 65  EDRLLQQMREQSSLAMEEADVIIFMMDARS 94



 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I ++G  N GKSSL N L   +  +     GTTRD +            + DTAGIR  
Sbjct: 177 RIAVVGRPNVGKSSLVNRLLGFERVVANPTAGTTRDSVDTLFMCNKKPYLLIDTAGIRRK 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305
            +T + +EK  +      +E AD++L++
Sbjct: 237 GKTTEKLEKYSVVDALRSIERADVVLVV 264


>gi|325962851|ref|YP_004240757.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein TIGR00650 [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468938|gb|ADX72623.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein TIGR00650 [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 527

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 41/183 (22%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L    V    A+   +  T R   T D    G    ++DT G 
Sbjct: 308 VAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVRKAETAD----GLGYTLADTVGF 363

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPK 318
             +      E  + T  EV ++DLIL                   +  E++++K      
Sbjct: 364 VRSLPTQLVEAFRSTLEEVADSDLILHVVDASHPDPEGQIAAVRKVFSEVDARK------ 417

Query: 319 NIDFIFIGTKSDLYSTYT------EEYDH-LISSFTGEGLEELINKIKSILSNKFKKLPF 371
            +  I +  K+D    +        E  H ++S+ TGEG+ EL+  I   +     KL  
Sbjct: 418 -VPEIIVLNKADAADPFVVERLKQREPRHVVVSARTGEGIPELLRAISEAIPRPSVKLEL 476

Query: 372 SIP 374
            IP
Sbjct: 477 LIP 479


>gi|317493863|ref|ZP_07952280.1| small GTP-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918190|gb|EFV39532.1| small GTP-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 287

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + AGKSSL NAL   D++ V+D+   TR  L   L L    + I D  G+ E++
Sbjct: 39  IGIMGKTGAGKSSLCNALFAGDISPVSDVAACTRKPLQFRLQLGKRFMTIIDLPGVGESE 98


>gi|168185421|ref|ZP_02620056.1| GTP-binding protein [Clostridium botulinum C str. Eklund]
 gi|169296536|gb|EDS78669.1| GTP-binding protein [Clostridium botulinum C str. Eklund]
          Length = 396

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 56/97 (57%), Gaps = 2/97 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   IV  G++N+GKSS+ NA+  +++++V+ + GTT D ++  ++L  +  V   DTAG
Sbjct: 8   NRKHIVFYGNTNSGKSSILNAIIGQEISLVSSVEGTTTDPVSKAMELLPFGPVLFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           I +  ++     +++T   +   D  + + +IN+  E
Sbjct: 68  INDNSELGSLR-VEKTLKTLNKTDFAIYVMDINNIDE 103


>gi|330752120|emb|CBL87081.1| GTP-binding protein era homolog [uncultured Flavobacteria
           bacterium]
          Length = 301

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ + Y + +SDT G+    
Sbjct: 16  VTIVGNPNVGKSTLMNAWVGERLSIITSKAQTTRHRILGIINGDDYQMVLSDTPGV--IK 73

Query: 282 DIVEKEGIKRTFLE--VENADLILLLKEINSKK 312
            I E +     F++  +E+AD+++ + EI  K+
Sbjct: 74  PIYEMQSSMMAFVKGALEDADILIYMVEIGEKE 106


>gi|261408013|ref|YP_003244254.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
           Y412MC10]
 gi|261284476|gb|ACX66447.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
           Y412MC10]
          Length = 288

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 190 KEVLNDI-LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           K++ N I L LK  I   I++G     +R    ++I+G  N GKS+L N LA +++A   
Sbjct: 94  KDIPNQIKLLLKEKIDKQIAKGMNPRAMR----VLIVGIPNVGKSTLINRLAGRNIAETG 149

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           D PG T+    I   + G  +++ DT GI
Sbjct: 150 DRPGVTKGQQWI--KVAGGEMELLDTPGI 176


>gi|329924289|ref|ZP_08279444.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
           HGF5]
 gi|328940771|gb|EGG37086.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
           HGF5]
          Length = 288

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 190 KEVLNDI-LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           K++ N I L LK  I   I++G     +R    ++I+G  N GKS+L N LA +++A   
Sbjct: 94  KDIPNQIKLLLKEKIDKQIAKGMNPRAMR----VLIVGIPNVGKSTLINRLAGRNIAETG 149

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           D PG T+    I   + G  +++ DT GI
Sbjct: 150 DRPGVTKGQQWI--KVAGGEMELLDTPGI 176


>gi|315648160|ref|ZP_07901261.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus vortex
           V453]
 gi|315276806|gb|EFU40149.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus vortex
           V453]
          Length = 288

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 190 KEVLNDI-LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           K++ N I L LK  I   I++G     +R    ++I+G  N GKS+L N LA +++A   
Sbjct: 94  KDIPNQIKLLLKEKIDKQIAKGMNPRAMR----VLIVGIPNVGKSTLINRLAGRNIAETG 149

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           D PG T+    I   + G  +++ DT GI
Sbjct: 150 DRPGVTKGQQWI--KVAGGEMELLDTPGI 176


>gi|271501406|ref|YP_003334431.1| GTP-binding protein HSR1-like protein [Dickeya dadantii Ech586]
 gi|270344961|gb|ACZ77726.1| GTP-binding protein HSR1-related protein [Dickeya dadantii Ech586]
          Length = 291

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           I I+G + AGKSSL NAL K DV+ V+D+   TR+ L + + +  + + + D  G+ E+
Sbjct: 39  IGIIGKTGAGKSSLCNALFKGDVSAVSDVSACTREPLRLRISVGRHSLTLVDLPGVGES 97


>gi|168486390|ref|ZP_02710898.1| GTP-binding protein [Streptococcus pneumoniae CDC1087-00]
 gi|183570601|gb|EDT91129.1| GTP-binding protein [Streptococcus pneumoniae CDC1087-00]
          Length = 368

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%)

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
           SG++S    QW+ K  H       D+  +  ++    + KEV++ I              
Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265
              E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD  
Sbjct: 158 ---EYYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            Y   I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|50913635|ref|YP_059607.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS10394]
 gi|94989767|ref|YP_597867.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS10270]
 gi|50902709|gb|AAT86424.1| GTP-binding protein [Streptococcus pyogenes MGAS10394]
 gi|94543275|gb|ABF33323.1| GTP-binding protein [Streptococcus pyogenes MGAS10270]
          Length = 372

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + ++G +N GKS+L NA+       KDV   +  PGTT D + I LD   +   
Sbjct: 160 LRNGRDVYVVGVTNVGKSTLINAIIQEITGNKDVITTSRFPGTTLDKIEIPLDDGTF--- 216

Query: 271 ISDTAGI 277
           I DT GI
Sbjct: 217 IFDTPGI 223


>gi|18310642|ref|NP_562576.1| ferrous iron transport protein B [Clostridium perfringens str. 13]
 gi|18145323|dbj|BAB81366.1| probable ferrous iron transport protein B [Clostridium perfringens
           str. 13]
          Length = 587

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279
           I +LG+ N GK++LFNAL   +   V + PG T D        EG     KI D  GI  
Sbjct: 4   IALLGNPNVGKTTLFNALTGSNQH-VGNWPGVTVD------KKEGLFNSNKIVDLPGIYA 56

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
            D    +E + + FLE  + DLIL
Sbjct: 57  LDTFSNEEKVSKKFLESGDVDLIL 80


>gi|118462577|ref|YP_882247.1| GTP-binding protein EngA [Mycobacterium avium 104]
 gi|254775515|ref|ZP_05217031.1| GTP-binding protein EngA [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|166225825|sp|A0QH59|DER_MYCA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|118163864|gb|ABK64761.1| GTP-binding protein EngA [Mycobacterium avium 104]
          Length = 466

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 17/154 (11%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  N GKS+L N +  +  A+V D+PG TRD ++ D    G    + DT G       ++
Sbjct: 36  GRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWTGRRFVVQDTGGWEPDAKGLQ 95

Query: 286 KEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKN-IDFIFIGTK 328
           +   ++  + +  AD ++L+ +                + S K +    N +D       
Sbjct: 96  QLVAEQASVAMRTADAVILVVDALVGATTADEAAARILLRSGKPVFLAANKVDSDKAEAD 155

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           + +  +      H IS+  G G+ +L++++ + L
Sbjct: 156 AAMLWSLGLGEPHPISAMHGRGVADLLDEVLAAL 189



 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA    ++V D+ GTT D +   ++L   + +  DTAG+R
Sbjct: 204 RVALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIELGDRVWRFVDTAGLR 261


>gi|4583532|gb|AAD25116.1|AF140550_7 YfgK [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 268

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 5/73 (6%)

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLI 302
           +V D+PGTTRD + I ++ +     + DTAG+R+     D VEK  + +T   +E+A+++
Sbjct: 7   VVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVV 66

Query: 303 LLLKEINSKKEIS 315
           LL+  I++++ IS
Sbjct: 67  LLV--IDAREGIS 77


>gi|242309064|ref|ZP_04808219.1| GTP-binding protein Era [Helicobacter pullorum MIT 98-5489]
 gi|239524488|gb|EEQ64354.1| GTP-binding protein Era [Helicobacter pullorum MIT 98-5489]
          Length = 294

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG  NAGKS+  N L  + +A+++     TR  + + + +E   +   DT GI + +
Sbjct: 8   VAVLGRPNAGKSTFLNTLLGERLALISHKANATRKRMNLVVMVEETQIVFVDTPGIHKQE 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
            ++ +  +K     +++ D +L L   + K  I F   IDF+
Sbjct: 68  KLLNQYMLKEAMKAMQDCDFLLFLAPASDK--IDF--YIDFL 105


>gi|94991776|ref|YP_599875.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS2096]
 gi|94545284|gb|ABF35331.1| GTP-binding protein [Streptococcus pyogenes MGAS2096]
          Length = 372

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + ++G +N GKS+L NA+       KDV   +  PGTT D + I LD   +   
Sbjct: 160 LRNGRDVYVVGVTNVGKSTLINAIIQEITGNKDVITTSRFPGTTLDKIEIPLDDGTF--- 216

Query: 271 ISDTAGI 277
           I DT GI
Sbjct: 217 IFDTPGI 223


>gi|150020381|ref|YP_001305735.1| GTP-binding protein, HSR1-related [Thermosipho melanesiensis BI429]
 gi|149792902|gb|ABR30350.1| GTP-binding protein, HSR1-related [Thermosipho melanesiensis BI429]
          Length = 258

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 13/98 (13%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   V +FS  E +N I   K  I+SH S+ KLGE      +++I G  N GKS++ N  
Sbjct: 73  ETSPVISFSKAESVNKI---KGFINSH-SKKKLGET-----RVLIAGVPNVGKSTIINKF 123

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + + +A     PG TR +  I+L      VK+ DT GI
Sbjct: 124 SGRKLAKTGMAPGITRGLQWINLG----SVKLLDTPGI 157


>gi|41407513|ref|NP_960349.1| GTP-binding protein EngA [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81831811|sp|Q740D6|DER_MYCPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|41395866|gb|AAS03732.1| hypothetical protein MAP_1415 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 466

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N LA    ++V D+ GTT D +   ++L   + +  DTAG+R
Sbjct: 204 RVALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIELGDRVWRFVDTAGLR 261



 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 17/154 (11%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  N GKS+L N +  +  A+V D+PG TRD ++ D    G    + DT G       ++
Sbjct: 36  GRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWTGRRFVVQDTGGWEPDAKGLQ 95

Query: 286 KEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKN-IDFIFIGTK 328
           +   ++  + +  AD ++L+ +                + S K +    N +D       
Sbjct: 96  QLVAEQASVAMRTADAVILVVDALVGATTADEAAARILLRSGKPVFLAANKVDSDKAEAD 155

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           + +  +      H IS+  G G+ +L++++ + L
Sbjct: 156 AAMLWSLGLGEPHPISAMHGRGVADLLDEVLAAL 189


>gi|238796704|ref|ZP_04640210.1| hypothetical protein ymoll0001_29210 [Yersinia mollaretii ATCC
           43969]
 gi|238719435|gb|EEQ11245.1| hypothetical protein ymoll0001_29210 [Yersinia mollaretii ATCC
           43969]
          Length = 291

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G +  GKSSL NAL + +V  V+D+   TRDVL + L    + + + D  G+ E++
Sbjct: 39  IGIMGKTGVGKSSLCNALFQGEVTPVSDVQACTRDVLRLRLSSGDHSLILVDLPGVGESE 98

Query: 282 --DIVEKEGIKRTFLEVENADLILLL 305
             D   +   +RT  E+   DLIL +
Sbjct: 99  LRDSEYESLYRRTLPEL---DLILWV 121


>gi|298373637|ref|ZP_06983626.1| GTP-binding protein Era [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274689|gb|EFI16241.1| GTP-binding protein Era [Bacteroidetes oral taxon 274 str. F0058]
          Length = 297

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 9/117 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G+ N GKS+L NAL  + ++I+T    TTR  +   ++ E + +  SDT G
Sbjct: 3   RAGF-VNIVGNPNVGKSTLMNALVGERISIITSKAQTTRHRIMGIVNGEDFQIVYSDTPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI----FIGTKS 329
           + + +  +++   + +   +++AD++L + ++    E    KN DF+     IG+K+
Sbjct: 62  VLKPNYKLQESMREFSDSALKDADILLYVTDVADNCE----KNADFLEKVKHIGSKT 114


>gi|170038957|ref|XP_001847313.1| nucleolar GTP-binding protein 2 [Culex quinquefasciatus]
 gi|167862591|gb|EDS25974.1| nucleolar GTP-binding protein 2 [Culex quinquefasciatus]
          Length = 619

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR   ++ I+G  N GKSSL N+L +K   +V   PG TR +  + +D     VK+ D+ 
Sbjct: 268 IRTSIRVGIVGLPNVGKSSLVNSLKRKRACLVGAKPGITRQMQEVQIDSH---VKLLDSP 324

Query: 276 GI 277
           GI
Sbjct: 325 GI 326


>gi|94987891|ref|YP_595992.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS9429]
 gi|94541399|gb|ABF31448.1| GTP-binding protein [Streptococcus pyogenes MGAS9429]
          Length = 372

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + ++G +N GKS+L NA+       KDV   +  PGTT D + I LD   +   
Sbjct: 160 LRNGRDVYVVGVTNVGKSTLINAIIQEITGNKDVITTSRFPGTTLDKIEIPLDDGTF--- 216

Query: 271 ISDTAGI 277
           I DT GI
Sbjct: 217 IFDTPGI 223


>gi|56808383|ref|ZP_00366137.1| COG1161: Predicted GTPases [Streptococcus pyogenes M49 591]
          Length = 214

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + ++G +N GKS+L NA+       KDV   +  PGTT D + I LD +G    
Sbjct: 2   LRNGRDVYVVGVTNVGKSTLINAIIQEITGNKDVITTSRFPGTTLDKIEIPLD-DGTF-- 58

Query: 271 ISDTAGI 277
           I DT GI
Sbjct: 59  IFDTPGI 65


>gi|227503450|ref|ZP_03933499.1| HflX family GTP-binding protein [Corynebacterium accolens ATCC
           49725]
 gi|227075953|gb|EEI13916.1| HflX family GTP-binding protein [Corynebacterium accolens ATCC
           49725]
          Length = 502

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 27/180 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           +I I G++NAGKSSL NA+    V +V D    T D  T    L +G  V  +DT G   
Sbjct: 275 QIAIAGYTNAGKSSLINAMTNAGV-LVEDALFATLDPTTRRASLADGRQVVFTDTVGFVR 333

Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF----------PKNI 320
                  E  K T  EV  AD++L          LK+I +  E+ +          P  I
Sbjct: 334 HLPTQLVEAFKSTLEEVLAADIMLHVVDGSDPFPLKQIEAVNEVIYDIVSETGEQAPPEI 393

Query: 321 DFIFIGTKSD--LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             I    ++D  + +      DH     +S+ TGEG++EL  +++  L+++   +   +P
Sbjct: 394 IVINKIDQADPLVLAELRHVLDHEDVVYVSARTGEGIDELSARVELFLNSRDSHVKLQVP 453


>gi|78187916|ref|YP_375959.1| ferrous iron transport protein B [Chlorobium luteolum DSM 273]
 gi|78167818|gb|ABB24916.1| Ferrous iron transport protein B [Chlorobium luteolum DSM 273]
          Length = 712

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G+ N GKSSLFNAL       V + PG T +     LD  GY +K+ D  G     
Sbjct: 9   IALTGNPNCGKSSLFNALTGAHQK-VGNFPGVTIEKYEGYLDYRGYRIKVVDLPGTYSLT 67

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
               +E + R +L  +  D+++
Sbjct: 68  PYSPEEIVTRQYLIEQRPDVVV 89


>gi|167753498|ref|ZP_02425625.1| hypothetical protein ALIPUT_01772 [Alistipes putredinis DSM 17216]
 gi|167658123|gb|EDS02253.1| hypothetical protein ALIPUT_01772 [Alistipes putredinis DSM 17216]
          Length = 293

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 7/139 (5%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NAL  + ++I+T    TTR  +   +  E + +  SDT GI +    
Sbjct: 9   IIGNPNVGKSTLMNALVGERLSIITSKAQTTRHRILGVVSGEDFQIVFSDTPGILKPSYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
           +++  +K     V +AD+IL + +   + +    ++ D +    +SD+    T    + I
Sbjct: 69  LQESMMKFVTGAVNDADVILYVTDTVEQSD----RSNDILEKIRQSDI---PTLAVINKI 121

Query: 344 SSFTGEGLEELINKIKSIL 362
              T E LEEL++K +++L
Sbjct: 122 DLTTPEKLEELVDKWQALL 140


>gi|117928001|ref|YP_872552.1| GTP-binding protein Era [Acidothermus cellulolyticus 11B]
 gi|117648464|gb|ABK52566.1| GTP-binding protein Era [Acidothermus cellulolyticus 11B]
          Length = 297

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   I+G  N GKS+L NA+ K  VAI +D P TTR V+   +      + + DT G
Sbjct: 6   RSGFA-CIVGRPNVGKSTLLNAMVKTKVAITSDRPQTTRHVVRGVVHRPDAQLVVVDTPG 64

Query: 277 I 277
           +
Sbjct: 65  L 65


>gi|257095332|ref|YP_003168973.1| GTP-binding protein HSR1-like [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047856|gb|ACV37044.1| GTP-binding protein HSR1-related [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 294

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++I+G  N GKS+L NAL K+ +A V D P  T+   T  LD+  +L   +DT G+
Sbjct: 118 RMLIMGIPNVGKSTLMNALLKRRIAKVGDEPAVTKSQQTSQLDVRHWL---TDTPGL 171


>gi|253583507|ref|ZP_04860705.1| ferrous iron transporter B [Fusobacterium varium ATCC 27725]
 gi|251834079|gb|EES62642.1| ferrous iron transporter B [Fusobacterium varium ATCC 27725]
          Length = 731

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 33/202 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+   G+ N GKS+L NA+A   +  V + PG T +      + +G  +K+ D  G+   
Sbjct: 3   KLAFTGNPNVGKSALINAIAGSKLK-VGNWPGVTVEKKEAIFNYKGEEIKLVDLPGVYSL 61

Query: 281 DDIVEKEGIKRTFLEVENADLIL----------------LLKEINSKKEISFPKNIDFIF 324
                +E I R F+  E+ D+++                LLKE+     ++     +F  
Sbjct: 62  SPYTLEEKITRDFILDESPDVVVNVIDSTNLERNLYLTYLLKELEKPTIMALNFYDEFTK 121

Query: 325 IGTKSDLYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +  K +L     EE+  LI       S+  G G+EEL++ I  + + K K   +S+P   
Sbjct: 122 LNYKLNL-----EEFQELIELKAIPVSALKGTGIEELLDSIIELAAKKEKAKKYSLPFDD 176

Query: 378 RHLYHLSQTVRYLEMASLNEKD 399
                ++  +R LE   +++K+
Sbjct: 177 ----SITGVIRNLEKKIISDKN 194


>gi|70726319|ref|YP_253233.1| GTP-binding protein YqeH [Staphylococcus haemolyticus JCSC1435]
 gi|68447043|dbj|BAE04627.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 366

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 21/152 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           RN   + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD + ++   
Sbjct: 158 RNKQDVYIVGTTNVGKSTLINKLIEQSVGEKDVVTTSRFPGTTLDLIDIPLDEKTFMY-- 215

Query: 272 SDTAGI------------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            DT GI            +E   IV K  IK+   ++ N    L    ++    +S  K 
Sbjct: 216 -DTPGIIQSHQMTHYVSEKELKTIVPKNEIKQRVFQL-NEGQTLFFGGLSRIDYVSGGKR 273

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
               +     +++ T TE+ + L  +  G  L
Sbjct: 274 PLVCYFSNDLNIHRTKTEKANDLWRNQIGNVL 305


>gi|148255461|ref|YP_001240046.1| putative GTP-binding protein (hflX) [Bradyrhizobium sp. BTAi1]
 gi|146407634|gb|ABQ36140.1| GTP-binding protein HflX [Bradyrhizobium sp. BTAi1]
          Length = 459

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 29/186 (15%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           R  Y++V L G++NAGKS+LFN L + DV     +  T    L       G    +SDT 
Sbjct: 222 RVPYRVVALVGYTNAGKSTLFNRLTRADVQAADMLFATLDPTLRAITLPHGGKAMLSDTV 281

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYS 333
           G             + T  EV  AD+IL +++++ +   +   +++ +   +G   +   
Sbjct: 282 GFISNLPTQLVAAFRATLEEVLEADVILHVRDMSHEDAEAQQHDVELVLGQLGIDPEATD 341

Query: 334 TYTEEYDH--------------------------LISSFTGEGLEELINKIKSILSNKFK 367
           T  E ++                           L+S+ TGEG++ L+  I+  L+    
Sbjct: 342 TIIEVWNKIDRLDEAARENLANIASRRPPERPCLLVSAHTGEGVDALLQAIEDRLAAART 401

Query: 368 KLPFSI 373
            L  +I
Sbjct: 402 TLDLTI 407


>gi|320529427|ref|ZP_08030515.1| GTP-binding protein Era [Selenomonas artemidis F0399]
 gi|320138393|gb|EFW30287.1| GTP-binding protein Era [Selenomonas artemidis F0399]
          Length = 298

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 218 NGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           N YK     ++G  NAGKS+L NAL  + +AI++D P TTR  +   L  E   V   DT
Sbjct: 2   NHYKSGFAAVIGRPNAGKSTLINALIGQKIAIMSDKPQTTRSRILCILTQEDAQVIFLDT 61

Query: 275 AGI 277
            G+
Sbjct: 62  PGV 64


>gi|296330959|ref|ZP_06873434.1| putative GTP-binding protein protease modulator [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305674477|ref|YP_003866149.1| putative GTP-binding protein protease modulator [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151964|gb|EFG92838.1| putative GTP-binding protein protease modulator [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412721|gb|ADM37840.1| putative GTP-binding protein protease modulator [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 420

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +NG  +I ++G++NAGKS+ FN L   D +   D+   T D +T  + L  GY V +SDT
Sbjct: 197 KNGVLQIALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLSDT 255

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            G  +          + T  EV+ ADLIL L
Sbjct: 256 VGFIQDLPTTLIAAFRSTLEEVKEADLILHL 286


>gi|260101321|ref|ZP_05751558.1| GTP-binding protein Era [Lactobacillus helveticus DSM 20075]
 gi|260084906|gb|EEW69026.1| GTP-binding protein Era [Lactobacillus helveticus DSM 20075]
 gi|328465883|gb|EGF37066.1| GTPase Era [Lactobacillus helveticus MTCC 5463]
          Length = 301

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 20/161 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG  N GKS+L N L  + VAI ++ P TTR+ ++     +   V   DT GI +  
Sbjct: 11  VALLGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKMQVVFVDTPGIFKPH 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----------INSKKEISFP-----KNIDFIFI 325
             ++    K +   + + DL+L + E            N  KE+  P       +D I  
Sbjct: 71  SKLDDYMDKASLSSLNDVDLVLFMVEPEEIGKGDQYIANLLKEVKVPVFLVINKVDQIHP 130

Query: 326 GTKSDLYSTY--TEEYDHL--ISSFTGEGLEELINKIKSIL 362
                +  +Y   E +  +  IS+  G G+E+L+N I   L
Sbjct: 131 NKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLNTINKYL 171


>gi|167771317|ref|ZP_02443370.1| hypothetical protein ANACOL_02675 [Anaerotruncus colihominis DSM
           17241]
 gi|167666568|gb|EDS10698.1| hypothetical protein ANACOL_02675 [Anaerotruncus colihominis DSM
           17241]
          Length = 438

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 21/177 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI--R 278
           + I+G++N GKS+L NAL    V +  D    T D  +  L L +G  V + DT G+  R
Sbjct: 226 VAIVGYTNVGKSTLLNALTGAGV-LSEDKLFATLDPTSRALTLPDGRSVMLIDTVGLVRR 284

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF---PKNIDFIFIG 326
               +V  E  + T  E   ADL+          + ++++  +++      ++I  + I 
Sbjct: 285 LPHQLV--EAFQSTLEEAAGADLLWCVCDAASDEMAEQVDVTRQLMRELGAQDIPMLVIL 342

Query: 327 TKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            K DL +      +    LIS+ TG G + L+ K   +L+   +++   +P  K  L
Sbjct: 343 NKCDLVADVPRALNQQTALISARTGFGFDMLLQKTSELLAPTHRRVTLMLPYDKTGL 399


>gi|138894843|ref|YP_001125296.1| GTP-binding protein hflX [Geobacillus thermodenitrificans NG80-2]
 gi|196248586|ref|ZP_03147287.1| GTP-binding proten HflX [Geobacillus sp. G11MC16]
 gi|134266356|gb|ABO66551.1| GTP-binding protein hflX [Geobacillus thermodenitrificans NG80-2]
 gi|196212311|gb|EDY07069.1| GTP-binding proten HflX [Geobacillus sp. G11MC16]
          Length = 415

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG 276
             +++ ++G++NAGKS+LFN L   D ++  ++   T D LT    L  GY V ++DT G
Sbjct: 195 RAFQVALVGYTNAGKSTLFNRLTAAD-SLEENLLFATLDPLTRKCILPCGYTVLLTDTVG 253

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
             +          + T  EV+ ADL+L
Sbjct: 254 FIQDLPTTLVAAFRSTLEEVKEADLLL 280


>gi|319788336|ref|YP_004147811.1| ribosome biogenesis GTP-binding protein YsxC [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317466848|gb|ADV28580.1| ribosome biogenesis GTP-binding protein YsxC [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 206

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           G+++   G SNAGKSS  NAL +++ +A V+  PG T+ ++  ++  E YLV +
Sbjct: 25  GFEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVYFEVAPERYLVDL 78


>gi|317508759|ref|ZP_07966410.1| GTP-binding protein Era [Segniliparus rugosus ATCC BAA-974]
 gi|316252953|gb|EFV12372.1| GTP-binding protein Era [Segniliparus rugosus ATCC BAA-974]
          Length = 301

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           Q +  E  R+G+ +   G  N GKSSL NAL   +V I +  P TTR  +   L+   + 
Sbjct: 2   QHRFPEGFRSGF-VCFAGRPNVGKSSLINALVGAEVMITSAHPQTTRRAVRAILNAPEHQ 60

Query: 269 VKISDTAGI 277
           + I DT G+
Sbjct: 61  IVIVDTPGV 69


>gi|307108122|gb|EFN56363.1| hypothetical protein CHLNCDRAFT_144853 [Chlorella variabilis]
          Length = 581

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE 279
           +I I+G  N GKS+L N L   +  +    PG TRD +   ++ EG  V++ DTAG IR 
Sbjct: 304 RIAIMGLPNVGKSTLANWLLGSERCLTGPEPGLTRDAIKERIEWEGQEVELVDTAGWIRR 363

Query: 280 T 280
           T
Sbjct: 364 T 364



 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPG--TTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I+G  N GKS+LFN L ++  A+V D PG   TRD       L     ++ DT+G+  
Sbjct: 41  VAIIGRPNVGKSALFNRLVRRREAVVHDTPGGHVTRDYQEGVARLADLRFRVIDTSGLEP 100

Query: 280 --TDDIVEKEGIKRTFLEVENADLILLL 305
               D ++      T   +  +D+ L L
Sbjct: 101 FLPGDSIQARATVLTATVLARSDIALFL 128


>gi|88658308|ref|YP_507292.1| GTP-binding protein Era [Ehrlichia chaffeensis str. Arkansas]
 gi|123493487|sp|Q2GGZ1|ERA_EHRCR RecName: Full=GTPase Era
 gi|88599765|gb|ABD45234.1| GTP-binding protein Era [Ehrlichia chaffeensis str. Arkansas]
          Length = 296

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 21/162 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G +NAGKS+L N L  + VA VT    TTR  +   L+ E   +   DT GI      
Sbjct: 13  IVGTTNAGKSTLINMLVGQKVAAVTPKVQTTRVRMHAVLNNENVQLIFIDTPGIFSPKTK 72

Query: 284 VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSD----- 330
           +EK  +K  ++ ++  + ++LL ++ +      +K IS  K  NI+ I +  K D     
Sbjct: 73  LEKFIVKHAWMSLKGIENVILLLDVKNYLNKHIEKIISRIKQSNINAILVVNKIDTVPTS 132

Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                   +YS ++      IS+    GL  L++ +  I  N
Sbjct: 133 SVDKAIEHMYSLHSFSKTFTISALHDIGLSRLVDYLCEISPN 174


>gi|240850198|ref|YP_002971591.1| GTP-binding protein Era [Bartonella grahamii as4aup]
 gi|240267321|gb|ACS50909.1| GTP-binding protein Era [Bartonella grahamii as4aup]
          Length = 301

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 44/197 (22%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISD 273
           R+G+ +V++G  NAGKS+L N L    V+IVT    TTR +   + I  D++  LV   D
Sbjct: 8   RSGF-VVLIGMPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLIRGIVIHDDVQIVLV---D 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----------------KKEISF 316
           T G+      +E+  +   +   ++AD++L+L +  S                 ++++  
Sbjct: 64  TPGVFRPHKRLERAMVSAAWGGAKSADVLLVLIDAQSGLSDEVDMMLDIVNNMKQEKVLV 123

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKL 369
              +D +    KS L +  T+  +        +IS+  G G ++L++     LSN  ++ 
Sbjct: 124 LNKVDTV---VKSSLLALTTKINERVKFAQTFMISALNGSGCKDLLHA----LSNMMQEG 176

Query: 370 PFSIPSHK------RHL 380
           P+  P  +      RHL
Sbjct: 177 PWYYPEDQISDMPMRHL 193


>gi|160901780|ref|YP_001567361.1| GTP-binding protein Era [Petrotoga mobilis SJ95]
 gi|160359424|gb|ABX31038.1| GTP-binding protein Era [Petrotoga mobilis SJ95]
          Length = 306

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 27/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G  N GKS+L NAL  + V IV+D   TTR+ +   L  + Y +   DT GI +  
Sbjct: 11  VALAGKPNVGKSTLINALLGQKVVIVSDKTQTTRNRVNCILTEDHYQIVFVDTPGIHKPI 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIGTKSDL 331
             + +  +      ++  DLIL +  I++K           EI     I  I +  K DL
Sbjct: 71  RKIGEYMVNIAINALKGVDLILFI--IDAKDGLRNSDLRVTEIVDKSKIPTILLVNKVDL 128

Query: 332 Y------STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                  +  TE+   L         IS+ TG+ L EL   I  +L    +  P  + + 
Sbjct: 129 VKDKEKINLMTEKIQSLCSNIVKTIEISALTGKNLSELKQSIIDLLPEGPQYYPEDMITD 188

Query: 377 KRHLYHLSQTVR 388
           K   + +S+ +R
Sbjct: 189 KPSRFIISELIR 200


>gi|269958647|ref|YP_003328434.1| GTP-binding protein Era [Anaplasma centrale str. Israel]
 gi|269848476|gb|ACZ49120.1| GTP-binding protein Era [Anaplasma centrale str. Israel]
          Length = 297

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L     +IVT    TTR  +    +     +  +DT G+    
Sbjct: 12  VAVVGATNAGKSTLINELVGFKASIVTPKVHTTRVRMNAVRNDGNVQLVFTDTPGVFAPK 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
            ++EK  +K  ++ +  AD+++L+ E
Sbjct: 72  TVLEKFLVKNAWMSIRGADIVVLVLE 97


>gi|240950443|ref|ZP_04754692.1| small GTP-binding protein [Actinobacillus minor NM305]
 gi|240295026|gb|EER45887.1| small GTP-binding protein [Actinobacillus minor NM305]
          Length = 287

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           I I+G S AGKSS  NAL ++D+   + + G TR++  I + L   +V + D  GI E 
Sbjct: 38  IGIMGKSGAGKSSFVNALCQEDICRTSGVGGCTREIQEIAIKLGEMVVHLYDFPGIAEN 96


>gi|158292289|ref|XP_313813.4| AGAP004514-PA [Anopheles gambiae str. PEST]
 gi|157017366|gb|EAA09214.4| AGAP004514-PA [Anopheles gambiae str. PEST]
          Length = 575

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR   ++ ++G  N GKSSL N+L +K   +V   PG TR +  + +D     VK+ D+ 
Sbjct: 258 IRTSIRVGVVGLPNVGKSSLVNSLKRKRACMVGARPGVTRQMQEVQIDSH---VKLLDSP 314

Query: 276 GI 277
           GI
Sbjct: 315 GI 316


>gi|221309623|ref|ZP_03591470.1| YnbA [Bacillus subtilis subsp. subtilis str. 168]
 gi|221323141|ref|ZP_03604435.1| YnbA [Bacillus subtilis subsp. subtilis str. SMY]
 gi|255767409|ref|NP_389625.2| GTP-binding protein protease modulator [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|238054339|sp|P94478|YNBA_BACSU RecName: Full=Putative GTP-binding protein ynbA
 gi|225185036|emb|CAB13627.2| putative GTP-binding protein protease modulator [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 420

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +NG  +I ++G++NAGKS+ FN L   D +   D+   T D +T  + L  GY V +SDT
Sbjct: 197 KNGVLQIALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLSDT 255

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            G  +          + T  EV+ ADLIL L
Sbjct: 256 VGFIQDLPTTLIAAFRSTLEEVKEADLILHL 286


>gi|24372195|ref|NP_716237.1| GTP-binding protein HflX [Shewanella oneidensis MR-1]
 gi|24346104|gb|AAN53682.1|AE015507_8 GTP-binding protein HflX [Shewanella oneidensis MR-1]
          Length = 435

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 95/227 (41%), Gaps = 34/227 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFNAL   DV     +  T    L   LDL    V ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNALTSSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDF-----IFIGT 327
             D+V     K T  E   A+L+L + +        N ++  S  K ID      + +  
Sbjct: 259 PHDLV--AAFKATLQETRQAELLLHIVDCADENMADNFEQVQSVLKEIDADEVMQLIVCN 316

Query: 328 KSDLYSTYTE--EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           K DL    T   EYD         +S+    G + L+  I  ++     +    IP+   
Sbjct: 317 KIDLLEDVTPRIEYDDRGKPVRVWVSAHKRLGFDLLLKAITELIGEVIHEFTLRIPATAG 376

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419
           H  +L Q  R   +      D G  I++  L      RLA  S G++
Sbjct: 377 H--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDADWRRLAKQSQGEL 421


>gi|15828851|ref|NP_326211.1| GTP-binding protein Era [Mycoplasma pulmonis UAB CTIP]
 gi|21263604|sp|Q98QI1|ERA_MYCPU RecName: Full=GTPase Era
 gi|14089794|emb|CAC13553.1| GTP-BINDING PROTEIN ERA [Mycoplasma pulmonis]
          Length = 293

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  N GKS+L N + + D+AIV+  P  TRD +      + Y +  +DT GI +T  
Sbjct: 7   TIIGRPNVGKSTLLNNILEYDLAIVSSKPQATRDQIMGIYSDDDYQLIFTDTPGIYKTKT 66

Query: 283 IVEKEGIKRTFLEVENADLILLLKEIN 309
              +    +++  +++ DL++ L   N
Sbjct: 67  KFGENLNAQSYESLKDIDLVIFLSPAN 93


>gi|315231324|ref|YP_004071760.1| GTP-binding HflX-like protein [Thermococcus barophilus MP]
 gi|315184352|gb|ADT84537.1| GTP-binding HflX-like protein [Thermococcus barophilus MP]
          Length = 428

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)

Query: 219 GYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           G+ IV L G++NAGKS+L NALA++++    D   TT D  T    +    V ++DT G 
Sbjct: 184 GFIIVALAGYTNAGKSTLLNALAREEIP-AKDQMFTTLDTTTRRFKVNQKRVLVTDTVGF 242

Query: 278 RETDDIVE--KEGIKRTFLEVENADLILLLKEIN 309
              DD+     E    T  E+  AD+ILL+ +++
Sbjct: 243 --IDDLPPFIVEAFHSTLEEITKADIILLVLDVS 274


>gi|160944574|ref|ZP_02091802.1| hypothetical protein FAEPRAM212_02088 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444356|gb|EDP21360.1| hypothetical protein FAEPRAM212_02088 [Faecalibacterium prausnitzii
           M21/2]
          Length = 421

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 28/182 (15%)

Query: 217 RNGYKIV-ILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           + G  +V ++G++N GKSSL NAL     A+ D+   T  P + + VL       G  V 
Sbjct: 205 KTGMPVVSLVGYTNVGKSSLMNALCGPSVAEADMLFATLDPTSRKLVLP-----SGMAVL 259

Query: 271 ISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP---------- 317
           + DT G   R   ++V  E  K T  E   +D+I+ + +  + ++E              
Sbjct: 260 LVDTVGFVSRLPHNLV--EAFKSTLEEAAWSDVIVRVADAGDEQREEQLAVTDEVLDGLD 317

Query: 318 -KNIDFIFIGTKSDLYSTYTEEYDHLISSF-TGEGLEELINKIKSILSNKFKKLPFSIPS 375
             +I  + +  K D  +T + + D L++S  TG GL++L+ K+  +LS++   +   +P 
Sbjct: 318 CTDIPRLTVYNKCDKPNTLSFDPDILLTSAKTGYGLDKLLQKLDEVLSDRVHTIRVLLPY 377

Query: 376 HK 377
            K
Sbjct: 378 DK 379


>gi|158521130|ref|YP_001529000.1| GTP-binding protein Era [Desulfococcus oleovorans Hxd3]
 gi|158509956|gb|ABW66923.1| GTP-binding protein Era [Desulfococcus oleovorans Hxd3]
          Length = 303

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I I G  NAGKS+L N LA + ++I +D P TTR+ +   ++ +   V   DT G
Sbjct: 12  RSGF-IAICGPPNAGKSTLLNLLAGEKISITSDKPQTTRNRILGVVNRKNAQVVFVDTPG 70

Query: 277 I 277
           I
Sbjct: 71  I 71


>gi|75675642|ref|YP_318063.1| GTP-binding protein, HSR1-related [Nitrobacter winogradskyi Nb-255]
 gi|74420512|gb|ABA04711.1| GTP-binding protein HflX [Nitrobacter winogradskyi Nb-255]
          Length = 442

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 31/187 (16%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y++V L G++NAGKS+LFN L + DV    D+   T D     L L  G    +SDT
Sbjct: 205 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRSLALPHGGKAMLSDT 263

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------------------- 311
            G             + T  EV  AD+IL +++I+ +                       
Sbjct: 264 VGFISNLPTQLVAAFRATLEEVMEADVILHVRDISHEDTEPQQHDVEAVLHQLGIDPDGP 323

Query: 312 -KEISFPKNIDFIFIGTKSDLYSTY----TEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            + I     ID      + DL +      T+    L+S+ TGEG+E L+  I+  L+   
Sbjct: 324 ARMIEVWNKIDRFDADQRKDLENVAARRSTDVPRFLVSAETGEGVETLLAAIEDRLAATR 383

Query: 367 KKLPFSI 373
             L  S+
Sbjct: 384 TTLDLSV 390


>gi|328955564|ref|YP_004372897.1| GTP-binding protein HflX [Coriobacterium glomerans PW2]
 gi|328455888|gb|AEB07082.1| GTP-binding protein HflX [Coriobacterium glomerans PW2]
          Length = 443

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGI 277
            ++I + G++NAGKS+L N L   D+ +  D    T D  T    L  G L  ++DT G 
Sbjct: 209 AFRIALAGYTNAGKSTLMNRLTGSDI-MSADKLFATLDPTTRAFKLPGGRLCTLTDTVGF 267

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINS--KKEISF 316
            +       +  K T  E  ++D+IL                   +L EI +  ++ ++ 
Sbjct: 268 IQKLPHGLVDAFKSTLAEARDSDIILEVVDASDENYLRQMSAVDVVLDEIGASEQRRVTV 327

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
              ID I    ++DL   + +    L+SS  G G+E L+ ++    S     +   IP  
Sbjct: 328 LNKIDLIDPLDRADLERRHPDA--ELVSSVNGLGIERLLERLSCEASTLDSVISLRIPYR 385

Query: 377 KRHLYHL 383
           +  L  L
Sbjct: 386 EAALISL 392


>gi|269215578|ref|ZP_06159432.1| GTP-binding protein HflX [Slackia exigua ATCC 700122]
 gi|269131065|gb|EEZ62140.1| GTP-binding protein HflX [Slackia exigua ATCC 700122]
          Length = 437

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 25/177 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I   G++NAGKSSL +AL   DV +  D    T D  T  L L EG    I+DT G  
Sbjct: 215 FRIAEAGYTNAGKSSLIHALTGADV-LSYDKLFATLDSTTRRLSLPEGRDATITDTVGFI 273

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIG 326
           +       E  + T  E+  ADLIL + + +S +  +  K            +I  + + 
Sbjct: 274 QKLPTNLIEAFRSTLDEISEADLILHVVDASSPRRDAQAKAVVETLGLIEAQDIPCMVVC 333

Query: 327 TKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            K DL     EE   LI         S+ TGEG++ L   I   ++     +  S+P
Sbjct: 334 NKVDLLD--DEERAELIRQHPDACLVSARTGEGMDALKTAIVERIAAYEVPVVLSVP 388


>gi|260887890|ref|ZP_05899153.1| GTP-binding protein [Selenomonas sputigena ATCC 35185]
 gi|330838754|ref|YP_004413334.1| small GTP-binding protein [Selenomonas sputigena ATCC 35185]
 gi|260862396|gb|EEX76896.1| GTP-binding protein [Selenomonas sputigena ATCC 35185]
 gi|329746518|gb|AEB99874.1| small GTP-binding protein [Selenomonas sputigena ATCC 35185]
          Length = 399

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 6/94 (6%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKI 271
           GE +  G+     G  NAGKSSL NA+  ++VA+V+   GTT D +   ++L     V +
Sbjct: 9   GERLHIGF----FGRRNAGKSSLINAITGQEVAVVSPEKGTTTDPVAKAMELLPLGPVLL 64

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            DT G  +T D+ E   +KRT   +   D+ +L+
Sbjct: 65  IDTPGFDDTGDLGELR-VKRTRRILNKTDIAVLV 97


>gi|281411667|ref|YP_003345746.1| small GTP-binding protein [Thermotoga naphthophila RKU-10]
 gi|281372770|gb|ADA66332.1| small GTP-binding protein [Thermotoga naphthophila RKU-10]
          Length = 404

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 26/171 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           IV+ G  N GKSS  N L  ++V+IV++  GTT D +   ++L     V + DT G+ + 
Sbjct: 12  IVVAGRRNVGKSSFMNTLVGQNVSIVSEYAGTTTDPVYKSMELYPVGPVTLVDTPGLDDV 71

Query: 281 DDI--VEKEGIKRTFLEVENA-------------DLILLLKEINSKKEISFPKNIDFI-F 324
            ++  +  E  +R F   +               D++ L KE+    EI F   ++ I  
Sbjct: 72  GELGRLRVEKARRVFYRADCGILVTDSEPTPYEDDVVNLFKEM----EIPFVVVVNKIDV 127

Query: 325 IGTKSD----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +G K++    LY +  E    L+S+   +G +++   I  IL    +++P+
Sbjct: 128 LGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD-EEIPY 177


>gi|239826727|ref|YP_002949351.1| GTP-binding proten HflX [Geobacillus sp. WCH70]
 gi|239807020|gb|ACS24085.1| GTP-binding proten HflX [Geobacillus sp. WCH70]
          Length = 415

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I ++G++NAGKS+LFN L   D +   ++   T D LT  + L  GY   ++DT G  
Sbjct: 197 FQISLVGYTNAGKSTLFNRLTDAD-SFEENLLFATLDPLTRKITLPSGYTALLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  EV+ ADLIL
Sbjct: 256 QDLPTTLVAAFRSTLEEVKEADLIL 280


>gi|320527305|ref|ZP_08028490.1| GTP-binding protein Era [Solobacterium moorei F0204]
 gi|320132329|gb|EFW24874.1| GTP-binding protein Era [Solobacterium moorei F0204]
          Length = 297

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R+G+ + + G  NAGKS+L N+L  + VAIV+  P TTR  +      E   +  +DT 
Sbjct: 1   MRSGF-VALAGRPNAGKSTLINSLIGEKVAIVSSKPQTTRSEIRGIYTDENCQIIFTDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI +    +E    K     ++  DLI L+
Sbjct: 60  GIHKPKFRLESRMNKEAADVIQGVDLIYLV 89


>gi|310779271|ref|YP_003967604.1| GTP-binding protein Era [Ilyobacter polytropus DSM 2926]
 gi|309748594|gb|ADO83256.1| GTP-binding protein Era [Ilyobacter polytropus DSM 2926]
          Length = 298

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+  G      DT 
Sbjct: 1   MKSGF-IAVVGRPNVGKSTLTNKLVNEKVAIVSDKAGTTRDSIKGILNHGGNQYIFIDTP 59

Query: 276 GI 277
           GI
Sbjct: 60  GI 61


>gi|294085068|ref|YP_003551828.1| GTP-binding protein, HSR1-like protein [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664643|gb|ADE39744.1| GTP-binding protein, HSR1-related protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 219

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 31/175 (17%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDL-------DLEGYLVKIS 272
           +I   G SN GKSSL NAL  ++ +A  +  PG TR ++  DL       DL GY    +
Sbjct: 46  EICFAGRSNVGKSSLVNALTGRRMLARTSQTPGRTRQLIFFDLGQRLGLVDLPGYGYASA 105

Query: 273 DTAGIRETDDIVEK-----EGIKRTFLEVE--------NADLILLLKE-------INSKK 312
               I     +  K     + ++R FL ++        +++++ LL E       + +K 
Sbjct: 106 PKTDIEAWTKLTRKFLAGRQSLQRVFLLIDARRGVGKGDSEIMKLLDESAVSWAAVLTKA 165

Query: 313 EISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNK 365
           +   P+ ++ +   T++ + +T+   Y  L   SS  G+G+E L   I      K
Sbjct: 166 DKLKPEALEKVCRATEATV-ATHVAAYPELFVTSSQAGDGIEHLRGHIAGFALQK 219


>gi|291530691|emb|CBK96276.1| Ras superfamily GTP-binding protein YlqF [Eubacterium siraeum 70/3]
 gi|291557800|emb|CBL34917.1| Ras superfamily GTP-binding protein YlqF [Eubacterium siraeum
           V10Sc8a]
          Length = 282

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +KN +S  +++ K   I+    +++++G  N GKSS  N ++K     V D PG TR   
Sbjct: 104 VKNLLSDLLAKRKAKGIVGQSLRVMVVGIPNVGKSSFINRISKAGKTKVEDRPGVTRGAQ 163

Query: 259 TIDLDLEGYLVKISDTAGI 277
            + LD E   +++ DT GI
Sbjct: 164 WVSLDKE---LELLDTPGI 179


>gi|261839491|gb|ACX99256.1| ferrous iron transport protein B [Helicobacter pylori 52]
          Length = 642

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL+   +  V +  G T D + + L  +   + I D  G    +
Sbjct: 6   VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E I + FLE    DLIL
Sbjct: 65  DFTTEEKITKDFLEKGQYDLIL 86


>gi|171911579|ref|ZP_02927049.1| hypothetical protein VspiD_10405 [Verrucomicrobium spinosum DSM
           4136]
          Length = 431

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 30/187 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI--RET 280
           I+G++NAGKSSL N L + +V +  D    T D  T  ++L +G  + ++DT G   R  
Sbjct: 214 IVGYTNAGKSSLLNKLTQSEV-LAEDKLFATLDTSTRRMELPDGQQLLLTDTVGFVRRLP 272

Query: 281 DDIVEKEGIKRTFLEVENADLIL-------------------LLKEINS--KKEISFPKN 319
            D+V  +  + T  E   AD ++                   +LKEI +  K+ I     
Sbjct: 273 HDLV--QSFRATLEETTLADFLIHVVDASHPSAHTFYETTTEVLKEIGAGDKRVILVLNK 330

Query: 320 IDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +D   +  +S L+    +  D + IS  TG+G+++L++K+  ++ ++  +L   +P ++ 
Sbjct: 331 MD--LVTEESRLHELKNQFPDAVQISVQTGQGIDDLLHKLHEMVFDRVLRLTLRLPMNRL 388

Query: 379 HLYHLSQ 385
            L  L+ 
Sbjct: 389 DLLALAH 395


>gi|116511050|ref|YP_808266.1| GTP-binding protein YqeH [Lactococcus lactis subsp. cremoris SK11]
 gi|116106704|gb|ABJ71844.1| Predicted GTPase [Lactococcus lactis subsp. cremoris SK11]
          Length = 401

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 15/103 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ K     +DV   +  PGTT D + I LD +  L
Sbjct: 195 EHYRRGRDVYVVGVTNVGKSTLINAIIKSASGSEDVITTSRFPGTTLDKIEIPLDEDSAL 254

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           +   DT GI     +         +LE E+   +   KEI  K
Sbjct: 255 I---DTPGIIHRGQMAH-------YLEPEDLKYVSPRKEIKPK 287


>gi|317470367|ref|ZP_07929758.1| ribosome biogenesis GTP-binding protein YsxC [Anaerostipes sp.
           3_2_56FAA]
 gi|316902171|gb|EFV24094.1| ribosome biogenesis GTP-binding protein YsxC [Anaerostipes sp.
           3_2_56FAA]
          Length = 204

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 11/121 (9%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++   G SN GKSSL NAL  +K  A V+  PG T+ +   +++ E Y V +      + 
Sbjct: 25  EVAFAGKSNVGKSSLINALMNRKSYARVSAQPGKTQTINYYNINEELYYVDLPGYGYAKV 84

Query: 280 TDDIVEKEG--IKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--------FIGTKS 329
           T+ + E+ G  I+R     +   L+ LL +I  K   +     D+I         I TKS
Sbjct: 85  TESVKEQWGAMIERYLHTSKQLKLVFLLIDIRHKPSKNDVMMYDWIVHNGYHPVIIATKS 144

Query: 330 D 330
           D
Sbjct: 145 D 145


>gi|313901194|ref|ZP_07834682.1| ribosome biogenesis GTPase YqeH [Clostridium sp. HGF2]
 gi|312954152|gb|EFR35832.1| ribosome biogenesis GTPase YqeH [Clostridium sp. HGF2]
          Length = 360

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 6/83 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G  +V++G +NAGKS+L NA+        +  PGTT D  +I   +EGY  ++ DT G
Sbjct: 160 RKGRDVVVMGMANAGKSTLLNAICDGVDLTTSRHPGTTLDFNSI--AMEGY--QLYDTPG 215

Query: 277 IRETDDIVEK--EGIKRTFLEVE 297
           +   D ++    +G+ +T + ++
Sbjct: 216 LTRMDSLLTHVDDGLLKTVIPLK 238


>gi|302879407|ref|YP_003847971.1| ferrous iron transport protein B [Gallionella capsiferriformans
           ES-2]
 gi|302582196|gb|ADL56207.1| ferrous iron transport protein B [Gallionella capsiferriformans
           ES-2]
          Length = 595

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I +LG  N GKS+LFN +     A V + PG T ++L+  + L   +V+I D  GI + 
Sbjct: 3   RIALLGMPNTGKSTLFNRM-TGGAARVGNWPGITVELLSGKILLGADMVEIIDLPGIYDL 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
               + E + R FL     DL L++
Sbjct: 62  HGFSDDEQVVRHFLHDNVPDLALVI 86


>gi|240145039|ref|ZP_04743640.1| GTP-binding protein Era [Roseburia intestinalis L1-82]
 gi|257202864|gb|EEV01149.1| GTP-binding protein Era [Roseburia intestinalis L1-82]
 gi|291535364|emb|CBL08476.1| GTP-binding protein Era [Roseburia intestinalis M50/1]
 gi|291538175|emb|CBL11286.1| GTP-binding protein Era [Roseburia intestinalis XB6B4]
          Length = 302

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVK 270
           + E  ++G+ + I+G  N GKS+L N L  + +AI ++ P TTR+ + T+  D+E   + 
Sbjct: 1   MKENFKSGF-VTIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTDMERGQIV 59

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
             DT GI +  + + +  +      +   D+IL L E
Sbjct: 60  FLDTPGIHKAKNKLGEYMVNTAEHTLNEVDVILWLVE 96


>gi|224437865|ref|ZP_03658812.1| ferrous ion uptake system protein [Helicobacter cinaedi CCUG 18818]
 gi|313144314|ref|ZP_07806507.1| ferrous ion uptake system protein [Helicobacter cinaedi CCUG 18818]
 gi|313129345|gb|EFR46962.1| ferrous ion uptake system protein [Helicobacter cinaedi CCUG 18818]
          Length = 760

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IV +G  N GKSSL N +    +  V +  G T +     ++ +GY+++I D  G    +
Sbjct: 6   IVCVGQPNVGKSSLVNKICGVHLK-VGNFTGVTIEKAEARIEYKGYILRIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           +   +E I + FLE +  D+IL
Sbjct: 65  EYSFEEQITKQFLETQEYDVIL 86


>gi|167750815|ref|ZP_02422942.1| hypothetical protein EUBSIR_01797 [Eubacterium siraeum DSM 15702]
 gi|167656250|gb|EDS00380.1| hypothetical protein EUBSIR_01797 [Eubacterium siraeum DSM 15702]
          Length = 282

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +KN +S  +++ K   I+    +++++G  N GKSS  N ++K     V D PG TR   
Sbjct: 104 VKNLLSDLLAKRKAKGIVGQSLRVMVVGIPNVGKSSFINRISKAGKTKVEDRPGVTRGAQ 163

Query: 259 TIDLDLEGYLVKISDTAGI 277
            + LD E   +++ DT GI
Sbjct: 164 WVSLDKE---LELLDTPGI 179


>gi|126736284|ref|ZP_01752026.1| GTP-binding protein HflX [Roseobacter sp. CCS2]
 gi|126714105|gb|EBA10974.1| GTP-binding protein HflX [Roseobacter sp. CCS2]
          Length = 412

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 37/183 (20%)

Query: 222 IVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G++NAGKS+LFN L       KD+   T  P   + VL       G  V +SDT G
Sbjct: 194 VALVGYTNAGKSTLFNRLTGAQVFAKDMLFATLDPTMRKIVLPT-----GDEVIMSDTVG 248

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF------------ 324
                        + T  EV +ADLI+ +++I+  +     +++  I             
Sbjct: 249 FISDLPTELVAAFRATLEEVLDADLIVHVRDISHPQTEEQAEDVHAILQSLGVAEEAPII 308

Query: 325 -IGTKSDLYS--------TYTEEYDHL--ISSFTGEGLEELI----NKIKSILSNKFKKL 369
            +  K+DL          T     D L  +S+ TGEG++ L+    +K+K   S +   L
Sbjct: 309 EVWNKTDLLEGDARDAVLTQAARTDDLFAVSAITGEGMDPLLAAIPDKLKDPRSEEHLSL 368

Query: 370 PFS 372
           PF+
Sbjct: 369 PFA 371


>gi|313900792|ref|ZP_07834282.1| hydrogenase maturation GTPase HydF [Clostridium sp. HGF2]
 gi|312954212|gb|EFR35890.1| hydrogenase maturation GTPase HydF [Clostridium sp. HGF2]
          Length = 396

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 3/101 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  N+GKS+L NA+ K+ V+ V+ + GTT D +   ++L G   V   DTAG  + 
Sbjct: 14  IGIFGKRNSGKSTLLNAITKQKVSTVSPVAGTTTDPVVKAMELHGLGPVVFYDTAGFDDE 73

Query: 281 DDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISFPKNI 320
            ++     +++T    +  D+ IL+ ++++   E+++ K +
Sbjct: 74  GELGNLR-VEKTVEVTQKTDMAILVFRDMDISWEMTWYKKL 113


>gi|256825020|ref|YP_003148980.1| GTP-binding protein Era [Kytococcus sedentarius DSM 20547]
 gi|256688413|gb|ACV06215.1| GTP-binding protein Era [Kytococcus sedentarius DSM 20547]
          Length = 310

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 35/184 (19%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ +  +G  NAGKS+L NAL  + +AI ++ P TTR  +   +  E   + + DT G
Sbjct: 12  RAGF-VCFVGRPNAGKSTLTNALVGQKIAITSNKPQTTRHTVRGIIGDEASQIVVVDTPG 70

Query: 277 IRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK------------KEISFPKNID 321
           + +   ++ +   + ++ T L+V   D+I      + K            +E+   +   
Sbjct: 71  LHKPRTLLGQRLNDVVRETLLDV---DVIGFCMPADQKPGPGDKYIAAELEELRRGRRTP 127

Query: 322 FIFIGTKSDLYST-----------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            I I TK+DL S               ++D ++      G  E ++ ++ +++   +KLP
Sbjct: 128 IIAIATKADLVSRDQLAEHLMAIDQLGDFDEIVPCSAVNG--EQLDVVRRLIT---EKLP 182

Query: 371 FSIP 374
            S P
Sbjct: 183 LSPP 186


>gi|22537804|ref|NP_688655.1| GTP-binding protein YqeH [Streptococcus agalactiae 2603V/R]
 gi|76786933|ref|YP_330278.1| GTP-binding protein YqeH [Streptococcus agalactiae A909]
 gi|77406588|ref|ZP_00783636.1| GTP-binding protein [Streptococcus agalactiae H36B]
 gi|22534697|gb|AAN00528.1|AE014267_11 GTP-binding protein [Streptococcus agalactiae 2603V/R]
 gi|76561990|gb|ABA44574.1| GTP-binding protein [Streptococcus agalactiae A909]
 gi|77174813|gb|EAO77634.1| GTP-binding protein [Streptococcus agalactiae H36B]
          Length = 372

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R+G  + ++G +N GKS+L NA+ +     +DV   +  PGTT D + I LD   Y 
Sbjct: 158 EKYRHGQDVYVVGVTNVGKSTLINAIIREITGSRDVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IFDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|296139514|ref|YP_003646757.1| GTP-binding proten HflX [Tsukamurella paurometabola DSM 20162]
 gi|296027648|gb|ADG78418.1| GTP-binding proten HflX [Tsukamurella paurometabola DSM 20162]
          Length = 479

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 38/184 (20%)

Query: 211 KLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDI-----PGTTRDVLTIDLDL 264
           K G   R+G   V I G++NAGKSSL NAL    V +   +     P T    LT     
Sbjct: 240 KRGARRRSGVPAVAIAGYTNAGKSSLLNALTDAGVLVQNALFATLDPTTRHGTLT----- 294

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-------------------LL 305
           +G  V  +DT G          E  + T  EV +ADL++                   +L
Sbjct: 295 DGRDVVFTDTVGFVRHLPTQLVEAFRSTLEEVVDADLLVHVVDGSDPMPQRQIDAVRHVL 354

Query: 306 KEINSKKEISFPKNIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEGLEELINKIK 359
           +E+  ++E + P+ +  I     +D      L     E     +S+ T EG++EL+ ++ 
Sbjct: 355 REVAGEREAALPRELLVINKTDAADPMVLAQLRVALPEAV--FVSAHTREGIDELMQRMT 412

Query: 360 SILS 363
            +++
Sbjct: 413 DLIT 416


>gi|13358054|ref|NP_078328.1| GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|6899489|gb|AAF30903.1|AE002147_4 GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970]
          Length = 304

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E+I+    + I+G  N GKS+L NA+ KK V+I+++ P TTR+ +    + +   +  +D
Sbjct: 4   EMIKKYGIVAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTD 63

Query: 274 TAGIRE 279
           T G  E
Sbjct: 64  TPGFHE 69


>gi|332981267|ref|YP_004462708.1| small GTP-binding protein [Mahella australiensis 50-1 BON]
 gi|332698945|gb|AEE95886.1| small GTP-binding protein [Mahella australiensis 50-1 BON]
          Length = 186

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           N+ S H S     E I    KI ++G  N GKS +FN L  K V  V++ PGTT ++   
Sbjct: 6   NNKSCHTSGN---EHIEGLPKIALVGTPNVGKSVIFNRLTGKYVT-VSNYPGTTVEISRG 61

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISF 316
              +     +I DT G+     I E+E + R  L  E  D++L ++   N K+ +SF
Sbjct: 62  KGRIGDCEFEIIDTPGMYSLMPITEEERVARRLLLEEKPDVVLHIVDAKNIKRMLSF 118


>gi|290968422|ref|ZP_06559961.1| GTP-binding protein Era [Megasphaera genomosp. type_1 str. 28L]
 gi|290781418|gb|EFD94007.1| GTP-binding protein Era [Megasphaera genomosp. type_1 str. 28L]
          Length = 299

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 93/200 (46%), Gaps = 25/200 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N + ++ V+IV+D   TTR+ +L I  D  G +V + DT GI + 
Sbjct: 11  VAVVGRPNVGKSTLINYIVRQKVSIVSDKAQTTRNRILCIYTDAAGQIVFL-DTPGIHKP 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNIDFIFIG----- 326
              + +      +  + + D +L L   N KK         +++  K   F+ I      
Sbjct: 70  KHKLGEYMDAAAYQSLRDIDAVLFLVAGNEKKGPGDLFVAEKLNACKVPVFLLINKVDLL 129

Query: 327 TKSDLYSTYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           TK+++    T EY  +        +S+ TG+ +  ++ ++K IL    +  P  + + + 
Sbjct: 130 TKAEILQKIT-EYRSVYPFAGIIPVSARTGDNVATVMGELKKILPPGPQYFPEDMVTDQP 188

Query: 379 HLYHLSQTVRYLEMASLNEK 398
                ++ +R   + SL E+
Sbjct: 189 ERVLAAEIIREKLLLSLREE 208


>gi|241761662|ref|ZP_04759749.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241373970|gb|EER63503.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 306

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 33/178 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  NAGKS+L NAL  + +AI++    TTR  ++ I L  +  ++ + DT GI   
Sbjct: 17  VAIVGAPNAGKSTLVNALVGQKIAIISPKAQTTRARLMGIALQDQTQILLV-DTPGIFTP 75

Query: 281 DDIVEKEGIKRTFLEVENADLIL---------------LLKEINSKKEISFPKNI--DFI 323
               ++  +   +   E A+L+                L++ + ++KE   PK I  + +
Sbjct: 76  KKRFDRAMVAAAWGSAEGANLVALVVDASSGLTRRIEPLVEAVAARKE---PKVIILNKV 132

Query: 324 FIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            I  K++       LY     E   ++S+ TG+G+ +L    K  L++   + P+  P
Sbjct: 133 DITPKAELLALAQKLYEAIKPEALFMVSATTGDGVADL----KRSLADMMPESPWHFP 186


>gi|237737545|ref|ZP_04568026.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419425|gb|EEO34472.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817]
          Length = 298

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+         DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFNDNQYIFIDTPGIHKAK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            ++ +         +++ D+IL +  ++  +EIS
Sbjct: 66  HLLGEYMTNSAIRVLKDVDVILFV--LDGSQEIS 97


>gi|312867215|ref|ZP_07727425.1| ribosome biogenesis GTPase YqeH [Streptococcus parasanguinis F0405]
 gi|311097344|gb|EFQ55578.1| ribosome biogenesis GTPase YqeH [Streptococcus parasanguinis F0405]
          Length = 368

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I LD   Y 
Sbjct: 158 EQYRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|197105188|ref|YP_002130565.1| GTP-binding protein HflX [Phenylobacterium zucineum HLK1]
 gi|196478608|gb|ACG78136.1| GTP-binding protein HflX [Phenylobacterium zucineum HLK1]
          Length = 424

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 33/170 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN L + +V +  D+   T D     L L +G    +SDT G    
Sbjct: 194 VALVGYTNAGKSTLFNRLTQAEV-LAQDMLFATLDPTLRMLKLPDGRPAILSDTVGF--I 250

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------------- 324
            D+  +  E  + T  EV  AD++L +++I S++  +  +++  +               
Sbjct: 251 SDLPHELVEAFRATLEEVREADVVLHVRDIASEETEAQAQDVRTVLQRLGVDMDERRILE 310

Query: 325 IGTKSDLYSTYTEEYDH------------LISSFTGEGLEELINKIKSIL 362
           +  K DL     E  D             L+S+ TGEG ++L+  + +++
Sbjct: 311 VWNKVDLLPA-DERQDAAGDARRAHPPAILVSAVTGEGCDDLLRAVGALV 359


>gi|297530500|ref|YP_003671775.1| GTP-binding proten HflX [Geobacillus sp. C56-T3]
 gi|297253752|gb|ADI27198.1| GTP-binding proten HflX [Geobacillus sp. C56-T3]
          Length = 415

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 17/174 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG 276
             +++ ++G++NAGKS++FN L   D ++  ++   T D LT    L  GY V ++DT G
Sbjct: 195 QAFQVALVGYTNAGKSTIFNRLTAAD-SLEENLLFATLDPLTRKCVLPCGYTVLVTDTVG 253

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIF 324
             +          + T  EV  ADL+L + + +    ++  +            +I  + 
Sbjct: 254 FIQDLPTTLVAAFRSTLEEVTEADLLLHVVDSSHPDYVAHERTVSRLLAELGASSIPMVT 313

Query: 325 IGTKSDLYSTY---TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +  KSD  ++    T     +IS+ +   ++ L   ++  +  +  +   SIPS
Sbjct: 314 VYNKSDQKASEFIPTTTASIMISALSAADIDRLRYFLEEAVKQQMARYDVSIPS 367


>gi|260754027|ref|YP_003226920.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258553390|gb|ACV76336.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 306

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 33/178 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  NAGKS+L NAL  + +AI++    TTR  ++ I L  +  ++ + DT GI   
Sbjct: 17  VAIVGAPNAGKSTLVNALVGQKIAIISPKAQTTRARLMGIALQDQTQILLV-DTPGIFTP 75

Query: 281 DDIVEKEGIKRTFLEVENADLIL---------------LLKEINSKKEISFPKNI--DFI 323
               ++  +   +   E A+L+                L++ + ++KE   PK I  + +
Sbjct: 76  KKRFDRAMVAAAWGSAEGANLVALVVDASSGLTRRIEPLVEAVAARKE---PKVIILNKV 132

Query: 324 FIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            I  K++       LY     E   ++S+ TG+G+ +L    K  L++   + P+  P
Sbjct: 133 DITPKAELLALAQKLYEAIKPEALFMVSATTGDGVADL----KRSLADMMPESPWHFP 186


>gi|145613534|ref|XP_363635.2| hypothetical protein MGG_01561 [Magnaporthe oryzae 70-15]
 gi|145020596|gb|EDK04725.1| hypothetical protein MGG_01561 [Magnaporthe oryzae 70-15]
          Length = 593

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + I+G+ N GKSSL NAL  K VA V  IPG T+    I L    YL+   D  G
Sbjct: 301 RKQVSVGIIGYPNTGKSSLINALRGKKVATVAPIPGETKVWQYITLTKRMYLI---DCPG 357

Query: 277 I 277
           I
Sbjct: 358 I 358


>gi|282897592|ref|ZP_06305592.1| Small GTP-binding protein domain protein [Raphidiopsis brookii D9]
 gi|281197515|gb|EFA72411.1| Small GTP-binding protein domain protein [Raphidiopsis brookii D9]
          Length = 504

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 126/275 (45%), Gaps = 44/275 (16%)

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI----IRNGYKIVI 224
           RS + A    + + D  + + + V   +  ++++++      + GEI     R   ++V+
Sbjct: 75  RSRVTAAQIPAVKSDAASTTLQAVRQQVAQIQDEVTRQALLSRTGEIEANLARGEIQVVV 134

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK--ISDTAGIRETDD 282
            G  +AGK+SL NA+  + V  V    GTT+   T  L L+G   K  I+DT GI E   
Sbjct: 135 FGTGSAGKTSLVNAIMGRMVGEVNAPMGTTKVGETYCLRLKGVERKILITDTPGILEAGI 194

Query: 283 I-VEKEGIKRTFLEVENADLILLLKEINSKKEISFP-KNIDFI-----FIGTKSDLYSTY 335
              E+E + RT      A+L+L + + + ++    P + +  I      +  K+DLY   
Sbjct: 195 AGTEREHLARTL--ATEANLLLFVVDNDLRRSEYEPLRGLAEIGKRSLLVLNKTDLYK-- 250

Query: 336 TEEYDHLISSFTGEGLEELINK--IKSILSNK----------FKKLPFSIPSHKRHLYHL 383
            E+ D ++     E +++ IN   + +I +N           F+  P  +P  KR     
Sbjct: 251 DEDKDAILIKLR-ERVKDYINHNDVVAIAANPQAVELEGGEIFRPEPEIVPLLKR----- 304

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
                   +A++   + G D+IA+N+ L S+ LG+
Sbjct: 305 --------IAAVLRAE-GEDLIADNILLQSLRLGE 330


>gi|167748794|ref|ZP_02420921.1| hypothetical protein ANACAC_03568 [Anaerostipes caccae DSM 14662]
 gi|167651764|gb|EDR95893.1| hypothetical protein ANACAC_03568 [Anaerostipes caccae DSM 14662]
          Length = 204

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 11/121 (9%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++   G SN GKSSL NAL  +K  A V+  PG T+ +   +++ E Y V +      + 
Sbjct: 25  EVAFAGKSNVGKSSLINALMNRKSYARVSAQPGKTQTINYYNINEELYYVDLPGYGYAKV 84

Query: 280 TDDIVEKEG--IKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--------FIGTKS 329
           T+ + E+ G  I+R     +   L+ LL +I  K   +     D+I         I TKS
Sbjct: 85  TESVKEQWGAMIERYLHTSKQLKLVFLLIDIRHKPSKNDVMMYDWIVHNGYHPVIIATKS 144

Query: 330 D 330
           D
Sbjct: 145 D 145


>gi|307298535|ref|ZP_07578338.1| ferrous iron transport protein B [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915700|gb|EFN46084.1| ferrous iron transport protein B [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 649

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI +LG+ N GK+S+FNAL      IV + PG T +  T  + L  + V + D  G    
Sbjct: 14  KIALLGNPNVGKTSIFNALTGSR-QIVANWPGVTVEKRTGVMKLANHTVDVVDLPGTYTL 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
                 E I R FL  E  D+ L++ +
Sbjct: 73  GATSLDERIARDFLINERPDVALVIGD 99


>gi|17064928|gb|AAL32618.1| putative protein [Arabidopsis thaliana]
 gi|28059086|gb|AAO29986.1| putative protein [Arabidopsis thaliana]
 gi|332646103|gb|AEE79624.1| GTP binding protein [Arabidopsis thaliana]
          Length = 660

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVT-----DIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  NAGKS+L NAL+KKD A VT      +PGTT  +L I   L     K+ DT G
Sbjct: 395 VWVIGAQNAGKSTLINALSKKDGAKVTRLTEAPVPGTTLGILKIGGILSAK-AKMYDTPG 453

Query: 277 I 277
           +
Sbjct: 454 L 454


>gi|49475305|ref|YP_033346.1| GTP-binding protein Era [Bartonella henselae str. Houston-1]
 gi|49238111|emb|CAF27318.1| GTP-binding protein era homolog [Bartonella henselae str.
           Houston-1]
          Length = 300

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +V++G  NAGKS+L N L    V+IVT    TTR ++   +  +   + + DT G
Sbjct: 8   RSGF-VVLIGMPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLIRGIVIHDNAQIVLIDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           +      +E+  +   +   +NAD++L+L
Sbjct: 67  VFSPHKRLERAMVSAAWGGAKNADVLLVL 95


>gi|319956465|ref|YP_004167728.1| GTP-binding protein era [Nitratifractor salsuginis DSM 16511]
 gi|319418869|gb|ADV45979.1| GTP-binding protein Era [Nitratifractor salsuginis DSM 16511]
          Length = 302

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 47/88 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L  + +A+V+     TR  + I +  +   +   DT G+ E +
Sbjct: 16  VAVVGRPNAGKSTLLNHLVGEKLAMVSKKAQATRKRMNIIVMHDNAQIIFVDTPGLHEKE 75

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
            ++ K  ++     + +ADLIL +  ++
Sbjct: 76  KLLNKFMLEEALKAIGDADLILFIAPVS 103


>gi|308062012|gb|ADO03900.1| iron(II) transport protein [Helicobacter pylori Cuz20]
          Length = 642

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL+   +  V +  G T D + + L  +   + I D  G    +
Sbjct: 6   VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKDRQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQYDLIL 86


>gi|298481814|ref|ZP_07000004.1| GTPase EngC protein 2 [Bacteroides sp. D22]
 gi|298272036|gb|EFI13607.1| GTPase EngC protein 2 [Bacteroides sp. D22]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 18/117 (15%)

Query: 173 EADLDF---SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           +ADLDF   S EE +++ SS+     I      I    +  +L + I  G  +V +G S 
Sbjct: 160 KADLDFDRQSVEEQIKHISSQ-----IPVFFTSIHQLETIVRLRKSISEGETVVFVGSSG 214

Query: 230 AGKSSLFNALAKKDVAIVTDIP---GTTRDVLT----IDLDLEGYLVKISDTAGIRE 279
            GKSSL NAL +K V + +DI    G  R   T    + +D  G L+   DT G+RE
Sbjct: 215 VGKSSLVNALCEKPVLLTSDISLSTGKGRHTSTRREMVLMDSSGVLI---DTPGVRE 268


>gi|15894928|ref|NP_348277.1| GTPase [Clostridium acetobutylicum ATCC 824]
 gi|15024610|gb|AAK79617.1|AE007674_6 Predicted GTPase with uncharacterized domain, ortholog of
           T.maritima (4980952) [Clostridium acetobutylicum ATCC
           824]
 gi|325509065|gb|ADZ20701.1| GTPase with uncharacterized domain [Clostridium acetobutylicum EA
           2018]
          Length = 411

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 4/91 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I + G +N GKSS+ NAL  +++A+V+++ GTT D +   ++L     V + DTAG+ + 
Sbjct: 15  IALFGKTNVGKSSVINALTSQEIALVSNVKGTTTDPVYKAMELLPLGPVMLIDTAGLDDI 74

Query: 281 DDIVE-KEGIKRTFLEVENADLILLLKEINS 310
            D+ E + G  +T   +   D+ +L+ ++ S
Sbjct: 75  SDLGELRRG--KTLEVLSKTDVAILVFDVES 103


>gi|296117721|ref|ZP_06836305.1| GTP-binding protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295969452|gb|EFG82693.1| GTP-binding protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 525

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 33/183 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           +I I G++NAGKSSL NAL    V +V D    T D  T   +L +G  V ++DT G   
Sbjct: 279 QIAIAGYTNAGKSSLINALTGAGV-LVEDALFATLDPTTRKAELGDGRHVVLTDTVGFVR 337

Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF-----------PKN 319
                  E  K T  EV NADL+L          LK+I +  ++ +           P+ 
Sbjct: 338 HLPTQLVEAFKSTLEEVFNADLMLHVVDGADPFPLKQIEAVNKVIYDIAKETGETPPPEI 397

Query: 320 IDFIFIGTKSDLYSTYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           I    I    DL      E  H+        +S+ TGEG+ EL  +I+  L++    +  
Sbjct: 398 IVVNKIDAADDLALA---EIRHVLDRENVVYVSAATGEGISELTTRIELFLNSLDSHVQL 454

Query: 372 SIP 374
            +P
Sbjct: 455 LVP 457


>gi|319898693|ref|YP_004158786.1| GTP-binding protein Era [Bartonella clarridgeiae 73]
 gi|319402657|emb|CBI76203.1| GTP-binding protein Era [Bartonella clarridgeiae 73]
          Length = 300

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    ++IVT    TTR ++   +  +   + + DT G
Sbjct: 8   RSGF-VAVIGVPNAGKSTLVNQLVGTKISIVTHKVQTTRTLVRGIVIYDKTQIILIDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           +      +E+  +   +   +NAD++L+L ++ S
Sbjct: 67  VFRPHKRLERAMVSAAWGGAKNADILLVLIDVQS 100


>gi|222151493|ref|YP_002560649.1| hypothetical protein MCCL_1246 [Macrococcus caseolyticus JCSC5402]
 gi|222120618|dbj|BAH17953.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 396

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R    + ++G +N GKS+L N L      +KDV   +  PGTT D++ I LD   +L
Sbjct: 186 ETLRANQDVYVVGTTNVGKSTLINKLIETSVGEKDVITTSHFPGTTLDLIDIPLDEHSFL 245

Query: 269 VKISDTAGI 277
               DT GI
Sbjct: 246 F---DTPGI 251


>gi|168063155|ref|XP_001783539.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664926|gb|EDQ51628.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 522

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT--TRDVLTIDLDLEGYLVKISDTAGIR 278
           K++++G  N GKS+LFN L K+  A+V + P +  TRDV      L     ++ DTAG+ 
Sbjct: 29  KVLLVGRPNVGKSALFNRLTKRREALVYNTPDSHVTRDVREGVAKLGDMRFRVMDTAGL- 87

Query: 279 ETD 281
           ETD
Sbjct: 88  ETD 90



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
            E+ R   ++ I G  N GKS+L N+L  ++  +    PG TRD + ++ + E   + + 
Sbjct: 238 AELKRVPMQLAIAGRPNVGKSTLLNSLLMEERVLTGPEPGLTRDSIRVEFEYENQKIFLV 297

Query: 273 DTAGIRETDDIVEKEG 288
           DTAG  +   +  KEG
Sbjct: 298 DTAGWMQRKKL--KEG 311


>gi|25011748|ref|NP_736143.1| GTP-binding protein YqeH [Streptococcus agalactiae NEM316]
 gi|77414364|ref|ZP_00790520.1| GTP-binding protein [Streptococcus agalactiae 515]
 gi|24413288|emb|CAD47367.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159599|gb|EAO70754.1| GTP-binding protein [Streptococcus agalactiae 515]
          Length = 372

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 22/110 (20%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R+G  + ++G +N GKS+L NA+ +     +DV   +  PGTT D + I LD   Y 
Sbjct: 158 EKYRHGRDVYVVGVTNVGKSTLINAIIREITGSRDVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
             I DT GI     +         +L  +N      LK ++ KKEI  PK
Sbjct: 217 --IFDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PK 250


>gi|262067524|ref|ZP_06027136.1| GTP-binding protein Era [Fusobacterium periodonticum ATCC 33693]
 gi|291378787|gb|EFE86305.1| GTP-binding protein Era [Fusobacterium periodonticum ATCC 33693]
          Length = 297

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           I I+G  N GKS+L N L  + VAIV+D  GTTRD +   L+++       DT GI +
Sbjct: 6   IAIVGRPNVGKSTLINKLVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGIHK 63


>gi|56416939|ref|YP_154013.1| GTP-binding protein Era [Anaplasma marginale str. St. Maries]
 gi|222475305|ref|YP_002563722.1| GTP-binding protein ERA (era) [Anaplasma marginale str. Florida]
 gi|254995121|ref|ZP_05277311.1| GTP-binding protein Era [Anaplasma marginale str. Mississippi]
 gi|56388171|gb|AAV86758.1| GTP-binding protein ERA [Anaplasma marginale str. St. Maries]
 gi|222419443|gb|ACM49466.1| GTP-binding protein ERA (era) [Anaplasma marginale str. Florida]
          Length = 297

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L     +IVT    TTR  +    +     +  +DT G+    
Sbjct: 12  VAVVGATNAGKSTLINELVGFKASIVTPKVHTTRVRMNAVRNDGNVQLVFTDTPGVFAPK 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
            ++EK  +K  ++ +  AD+++L+ E
Sbjct: 72  TVLEKFLVKNAWMSIRGADVVVLVLE 97


>gi|297820508|ref|XP_002878137.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297323975|gb|EFH54396.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 642

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVT-----DIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  NAGKS+L NAL+KKD A VT      +PGTT  +L I   L     K+ DT G
Sbjct: 379 VWVIGAQNAGKSTLINALSKKDGAKVTRLTEAPVPGTTLGILRIGGILSAK-AKMYDTPG 437

Query: 277 I 277
           +
Sbjct: 438 L 438


>gi|158424703|ref|YP_001525995.1| GTP-binding protein [Azorhizobium caulinodans ORS 571]
 gi|158331592|dbj|BAF89077.1| GTP-binding protein [Azorhizobium caulinodans ORS 571]
          Length = 459

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 31/174 (17%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y +V L G++NAGKS+LFN L + +V +  D+   T D     +DL  G  V +SDT
Sbjct: 219 RVPYPVVALVGYTNAGKSTLFNRLTQAEV-MAQDLLFATLDPTLRAVDLPHGTRVILSDT 277

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------------------- 311
            G             + T  EV  AD+IL +++I+                         
Sbjct: 278 VGFISELPTQLVAAFRATLEEVIEADVILHVRDISHPDTDAQAADVKDVLTELGIDVEAG 337

Query: 312 -KEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSFTGEGLEELINKIKS 360
            + +     ID +    +  L +T      E    L+S+ TGEG   L+++I++
Sbjct: 338 GRLVEVWNKIDILPEAEREQLLNTAARAEPEARPELVSALTGEGAPALLDRIEA 391


>gi|144575090|gb|AAZ43799.2| GTP-binding protein ERA [Mycoplasma synoviae 53]
          Length = 295

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280
           + I+G  NAGKSSL N +   +++IVT +  TTR+ +T  +  EG L +   DT GI + 
Sbjct: 11  VTIVGRPNAGKSSLLNTILGYNLSIVTPVAQTTRNQIT-GVYTEGNLQIIFIDTPGIHKP 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
             +  +   K  F    + DL+L L
Sbjct: 70  KSLFGEHLNKEAFDTFSSVDLVLFL 94


>gi|56552280|ref|YP_163119.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543854|gb|AAV90008.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 306

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 33/178 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  NAGKS+L NAL  + +AI++    TTR  ++ I L  +  ++ + DT GI   
Sbjct: 17  VAIVGAPNAGKSTLVNALVGQKIAIISPKAQTTRARLMGIALQDQTQILLV-DTPGIFTP 75

Query: 281 DDIVEKEGIKRTFLEVENADLIL---------------LLKEINSKKEISFPKNI--DFI 323
               ++  +   +   E A+L+                L++ + ++KE   PK I  + +
Sbjct: 76  KKRFDRAMVAAAWGSAEGANLVALVVDASSGLTRRIEPLVEAVAARKE---PKVIILNKV 132

Query: 324 FIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            I  K++       LY     E   ++S+ TG+G+ +L    K  L++   + P+  P
Sbjct: 133 DITPKAELLALAQKLYEAIKPEALFMVSATTGDGVADL----KHSLADMMPESPWHFP 186


>gi|241764501|ref|ZP_04762522.1| GTP-binding proten HflX [Acidovorax delafieldii 2AN]
 gi|241366085|gb|EER60682.1| GTP-binding proten HflX [Acidovorax delafieldii 2AN]
          Length = 375

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 8/107 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAG- 276
           + I ++G++NAGKS+LFNAL K   A   D    T D  T  L L   G  V +SDT G 
Sbjct: 186 FNISLVGYTNAGKSTLFNALVKAR-AYAADQLFATLDTTTRQLYLGEAGRSVSLSDTVGF 244

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           IR+    +  +  + T  E  +ADL+L + + ++     FP+ ID +
Sbjct: 245 IRDLPHGL-VDAFQATLQEAVDADLLLHVVDASNPH---FPEQIDQV 287


>gi|161507651|ref|YP_001577605.1| GTP-binding protein Era [Lactobacillus helveticus DPC 4571]
 gi|254783658|sp|A8YVM7|ERA_LACH4 RecName: Full=GTPase Era
 gi|160348640|gb|ABX27314.1| GTP-binding protein [Lactobacillus helveticus DPC 4571]
          Length = 301

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 26/164 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG  N GKS+L N L  + VAI ++ P TTR+ ++     +   V   DT GI +  
Sbjct: 11  VALLGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKMQVVFVDTPGIFKPH 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----------INSKKEISFPKNIDFIFIGTKSD 330
             ++    K +   + + DL+L + E            N  KE+  P    F+ I     
Sbjct: 71  SKLDDYMDKASLSSLNDVDLVLFMVEPEEIGKGDQYIANLLKEVKVPV---FLVINKVDQ 127

Query: 331 LYST----YTEEYDHL--------ISSFTGEGLEELINKIKSIL 362
           ++        + Y  L        IS+  G G+E+L+N I   L
Sbjct: 128 IHPNKLLLIMDSYHKLEGFKEILPISATQGIGIEDLLNTINKYL 171


>gi|323705744|ref|ZP_08117317.1| ferrous iron transport protein B [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534962|gb|EGB24740.1| ferrous iron transport protein B [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 604

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 10/83 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIRET 280
           ++G+ N GK++LFN L   +   V + PG T +        EG++   VKI D  GI   
Sbjct: 14  LIGNPNVGKTTLFNLLTGLNQH-VGNWPGVTVE------KKEGFINDNVKIVDLPGIYAM 66

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D    +E I ++FLE  N D IL
Sbjct: 67  DTYSNEEKISKSFLESGNVDFIL 89


>gi|296328716|ref|ZP_06871231.1| GTP-binding protein Era [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296154153|gb|EFG94956.1| GTP-binding protein Era [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 296

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ +         +++ D+IL L
Sbjct: 66  HLLGEYMTNIAVKILKDVDIILFL 89


>gi|326803637|ref|YP_004321455.1| ribosome biogenesis GTP-binding protein YsxC [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650781|gb|AEA00964.1| ribosome biogenesis GTP-binding protein YsxC [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 200

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 11/121 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGI 277
           +I + G SN GKSS  N +   K +A ++  PG T+ +   +LD   YLV +     A +
Sbjct: 26  EIALAGRSNVGKSSFINTMTNHKKIARISSKPGKTQQLNYYNLDNSLYLVDVPGYGYAKV 85

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNID-----FIFIGTKS 329
            +T+    ++ +   F++ EN + + LL +     SK +I+    +D     +  I TK+
Sbjct: 86  SKTERSRWQKQLADYFIQRENLEAVFLLVDFRHRPSKDDINMKDFLDQCQVPYFIIATKA 145

Query: 330 D 330
           D
Sbjct: 146 D 146


>gi|294615006|ref|ZP_06694895.1| nitric-oxide synthase [Enterococcus faecium E1636]
 gi|291592137|gb|EFF23757.1| nitric-oxide synthase [Enterococcus faecium E1636]
          Length = 340

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R+G  + I+G +N GKS+L N + K     +DV   +  PGTT D + I LD   +L+  
Sbjct: 162 RDGRDVYIVGVTNVGKSTLINQIIKNTAGVQDVITTSQFPGTTLDKIEIPLDDGHFLI-- 219

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            DT GI     +         +L  ++  +I  LKEI  K
Sbjct: 220 -DTPGIIHRHQMAH-------YLGKKDLRIIAPLKEIKPK 251


>gi|254506641|ref|ZP_05118782.1| GTP-binding protein [Vibrio parahaemolyticus 16]
 gi|219550514|gb|EED27498.1| GTP-binding protein [Vibrio parahaemolyticus 16]
          Length = 311

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 13/104 (12%)

Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           F +E +V+      S +  +N I+ L   ++ H  + ++G+ IR     +I+G  N GKS
Sbjct: 75  FEKEHNVKAIAITTSQQAEVNKIMELVRKLAPH--REEIGKNIRT----MIMGIPNVGKS 128

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           ++ NALA + +A+  + P  TR    I+L   G +  +SDT GI
Sbjct: 129 TIINALAGRTIAVTGNQPAVTRRQQRINLQ-NGIV--LSDTPGI 169


>gi|169350470|ref|ZP_02867408.1| hypothetical protein CLOSPI_01238 [Clostridium spiroforme DSM 1552]
 gi|169292790|gb|EDS74923.1| hypothetical protein CLOSPI_01238 [Clostridium spiroforme DSM 1552]
          Length = 365

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 9/67 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           R+G  + I+G +N GKSSL NAL K       ++   ++ PGTT D++ I LD   YL  
Sbjct: 158 RHGRDVYIVGVTNVGKSSLINALLKHYGTGDNNLITTSEFPGTTLDLIEIALDDHSYLY- 216

Query: 271 ISDTAGI 277
             D+ GI
Sbjct: 217 --DSPGI 221


>gi|1750108|gb|AAB41077.1| YnbA [Bacillus subtilis]
          Length = 334

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +NG  +I ++G++NAGKS+ FN L   D +   D+   T D +T  + L  GY V +SDT
Sbjct: 168 KNGVLQIALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLSDT 226

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            G  +          + T  EV+ ADLIL L
Sbjct: 227 VGFIQDLPTTLIAAFRSTLEEVKEADLILHL 257


>gi|77408261|ref|ZP_00785004.1| GTP-binding protein [Streptococcus agalactiae COH1]
 gi|77173119|gb|EAO76245.1| GTP-binding protein [Streptococcus agalactiae COH1]
 gi|319745586|gb|EFV97887.1| GTP-binding protein [Streptococcus agalactiae ATCC 13813]
          Length = 372

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R+G  + ++G +N GKS+L NA+ +     +DV   +  PGTT D + I LD   Y 
Sbjct: 158 EKYRHGRDVYVVGVTNVGKSTLINAIIREITGSRDVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IFDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|82541411|ref|XP_724947.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479777|gb|EAA16512.1| probable GTP-binding protein engb-related [Plasmodium yoelii
           yoelii]
          Length = 236

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 77/179 (43%), Gaps = 42/179 (23%)

Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDL-------DLEGY-LVKI 271
           +I I G SN GKSSL NAL   ++VA  +  PG TR +   +L       DL GY   K+
Sbjct: 33  QIAIFGRSNVGKSSLINALMNYREVAQASKTPGRTRHLFIYNLLNYISVVDLPGYGFAKV 92

Query: 272 S----DTAGIRETDDIVEKEGIKRTFLEVENADL------ILLLKEINSKKEISFPKNID 321
           S    D   I   + + + + +KR    +E  +L      +LL        ++   KNI 
Sbjct: 93  SKSLRDNWSILIEEYLNKAKNLKRALCLIECTELFTPYDYVLL--------DMFIMKNIP 144

Query: 322 FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP-FSIPSHKRH 379
           F  I TK D                  E L   + KI SI+ N  KK+  F+   HK++
Sbjct: 145 FQIIVTKID--------------KLKAEELHHAMIKIISIIENYKKKVKVFNENIHKKN 189


>gi|296876996|ref|ZP_06901040.1| ribosome biogenesis GTPase YqeH [Streptococcus parasanguinis ATCC
           15912]
 gi|296432031|gb|EFH17834.1| ribosome biogenesis GTPase YqeH [Streptococcus parasanguinis ATCC
           15912]
          Length = 368

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I LD   Y 
Sbjct: 158 EQYRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|240047222|ref|YP_002960610.1| putative GTP-binding protein engB [Mycoplasma conjunctivae HRC/581]
 gi|239984794|emb|CAT04770.1| Probable GTP-binding protein engB [Mycoplasma conjunctivae]
          Length = 183

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 7/54 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-------DVLTIDLDLEGY 267
           +I  +G SN GKSSL NALAK+ +A V+  PG T+       D   I +DL GY
Sbjct: 20  QIAFIGRSNVGKSSLINALAKQKIAKVSKHPGRTQLINYFKTDKNKIVVDLPGY 73


>gi|237715101|ref|ZP_04545582.1| ribosome-associated GTPase [Bacteroides sp. D1]
 gi|262408950|ref|ZP_06085495.1| ribosome small subunit-dependent GTPase A [Bacteroides sp. 2_1_22]
 gi|294643907|ref|ZP_06721695.1| putative ribosome small subunit-dependent GTPase A [Bacteroides
           ovatus SD CC 2a]
 gi|294809991|ref|ZP_06768665.1| putative ribosome small subunit-dependent GTPase A [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229444934|gb|EEO50725.1| ribosome-associated GTPase [Bacteroides sp. D1]
 gi|262353161|gb|EEZ02256.1| ribosome small subunit-dependent GTPase A [Bacteroides sp. 2_1_22]
 gi|292640757|gb|EFF58987.1| putative ribosome small subunit-dependent GTPase A [Bacteroides
           ovatus SD CC 2a]
 gi|294442837|gb|EFG11630.1| putative ribosome small subunit-dependent GTPase A [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 18/117 (15%)

Query: 173 EADLDF---SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           +ADLDF   S EE +++ SS+     I      I    +  +L + I  G  +V +G S 
Sbjct: 160 KADLDFDRQSVEEQIKHISSQ-----IPVFFTSIHQLETIVRLRKSISEGETVVFVGSSG 214

Query: 230 AGKSSLFNALAKKDVAIVTDIP---GTTRDVLT----IDLDLEGYLVKISDTAGIRE 279
            GKSSL NAL +K V + +DI    G  R   T    + +D  G L+   DT G+RE
Sbjct: 215 VGKSSLVNALCEKPVLLTSDISLSTGKGRHTSTRREMVLMDSSGVLI---DTPGVRE 268


>gi|296129768|ref|YP_003637018.1| ribosome-associated GTPase EngA [Cellulomonas flavigena DSM 20109]
 gi|296021583|gb|ADG74819.1| ribosome-associated GTPase EngA [Cellulomonas flavigena DSM 20109]
          Length = 515

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N +   +  +V D+ GTTRD +   + L G      DTAGIR
Sbjct: 256 RVALVGRPNVGKSSLLNKVVGSERVVVDDLAGTTRDPVDELVALGGKPWVFVDTAGIR 313



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 83  LAVVGRPNVGKSTLVNRILGRREAVVEDNPGVTRDRVSYPAEWSGRRFTLVDTGGWEVDV 142

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++K   ++  + ++ AD +L +
Sbjct: 143 AGIDKRVAQQAEVAIDLADAVLFV 166


>gi|6735297|emb|CAB68124.1| putative protein [Arabidopsis thaliana]
          Length = 629

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVT-----DIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  NAGKS+L NAL+KKD A VT      +PGTT  +L I   L     K+ DT G
Sbjct: 379 VWVIGAQNAGKSTLINALSKKDGAKVTRLTEAPVPGTTLGILKIGGILSAK-AKMYDTPG 437

Query: 277 I 277
           +
Sbjct: 438 L 438


>gi|315658127|ref|ZP_07910999.1| ribosome biogenesis GTPase YqeH [Staphylococcus lugdunensis M23590]
 gi|315496456|gb|EFU84779.1| ribosome biogenesis GTPase YqeH [Staphylococcus lugdunensis M23590]
          Length = 366

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 21/152 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R+   + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++   
Sbjct: 158 RDHDDVYIVGTTNVGKSTLINKLIELSVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY-- 215

Query: 272 SDTAGI------------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            DT GI            +E   I+ K+ IK+   ++ N    L L  +     +S  K 
Sbjct: 216 -DTPGIIQEHQMTHLVTEKELKTIIPKKEIKQRVYQL-NESQTLFLGGLARIDYVSGGKR 273

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
               F     +++ T TE+ + L  +  G+ L
Sbjct: 274 PLICFFSNDLNIHRTKTEKANELWKNQLGDLL 305


>gi|293406539|ref|ZP_06650465.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|291426545|gb|EFE99577.1| conserved hypothetical protein [Escherichia coli FVEC1412]
          Length = 111

 Score = 43.5 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 35/58 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           I I+G S AGKSSL NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E
Sbjct: 52  IGIMGKSGAGKSSLCNALFQGEVTPVSDVLAGTREVQRFRLSGHGHSMVITDLPGVGE 109


>gi|269866639|ref|XP_002652342.1| GTPase, predicted [Enterocytozoon bieneusi H348]
 gi|220062702|gb|EED41715.1| GTPase, predicted [Enterocytozoon bieneusi H348]
          Length = 158

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 8/135 (5%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N GKSSL N L  K V  V  IPG T+    I L  + YL+   D+ G+   +++ 
Sbjct: 9   VGYPNIGKSSLINILKNKQVCKVAPIPGETKVWQYITLMKDVYLI---DSPGVVPINNL- 64

Query: 285 EKEGIKRTFLEVEN-ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
            KE +    + VEN AD    + EI ++   +  K +  I      D +  + ++Y  L 
Sbjct: 65  -KEAVLHGAVRVENLADPDFYVAEIFNRAGFNEIKKLYCINFENIDDFFIEFAKKYKKLH 123

Query: 344 SSFTGEGLEELINKI 358
           +   G+    LI+KI
Sbjct: 124 AG--GQPNINLISKI 136


>gi|150021370|ref|YP_001306724.1| ribosome biogenesis GTP-binding protein YsxC [Thermosipho
           melanesiensis BI429]
 gi|149793891|gb|ABR31339.1| small GTP-binding protein [Thermosipho melanesiensis BI429]
          Length = 191

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 29/161 (18%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-------LTIDLDLEGY-LVKISDT 274
           V +G SN GKS+L N L   ++A ++  PG T  V       L   +DL GY   K+S+ 
Sbjct: 23  VFVGRSNVGKSTLLNTLTGTNIAKISKKPGKTASVNFYKINNLFYFVDLPGYGFAKVSEK 82

Query: 275 AGIRETDDIVEK------EGIKRTFL------EVENAD--LILLLKEINSKKEISFPKNI 320
             IR    I+E         IK  FL      E++  D  +I  LK+++ +  I   K I
Sbjct: 83  ERIR-WKQIIEMYFESRFWNIKIVFLLIDGRHELQKNDEQMINWLKDLDLQFSIILTK-I 140

Query: 321 DFIFIGTKSDLYSTYTEEY--DHLI---SSFTGEGLEELIN 356
           D + +  KS + S Y   +  +++I   S+ T EG+ E++N
Sbjct: 141 DKLKMSEKSKMISYYKRLFGENYIIIPYSAITKEGVNEILN 181


>gi|42565990|ref|NP_191277.3| GTP binding [Arabidopsis thaliana]
          Length = 644

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVT-----DIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  NAGKS+L NAL+KKD A VT      +PGTT  +L I   L     K+ DT G
Sbjct: 379 VWVIGAQNAGKSTLINALSKKDGAKVTRLTEAPVPGTTLGILKIGGILSAK-AKMYDTPG 437

Query: 277 I 277
           +
Sbjct: 438 L 438


>gi|56419859|ref|YP_147177.1| GTP-binding protein protease modulator [Geobacillus kaustophilus
           HTA426]
 gi|56379701|dbj|BAD75609.1| GTP-binding protein protease modulator [Geobacillus kaustophilus
           HTA426]
          Length = 415

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 17/174 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG 276
             +++ ++G++NAGKS++FN L   D ++  ++   T D LT    L  GY V ++DT G
Sbjct: 195 QAFQVALVGYTNAGKSTIFNRLTAAD-SLEENLLFATLDPLTRKCVLPCGYTVLVTDTVG 253

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIF 324
             +          + T  EV  ADL+L + + +    ++  +            +I  + 
Sbjct: 254 FIQDLPTTLVAAFRSTLEEVTEADLLLHVVDSSHPDYVAHERTVSRLLAELGASSIPMVT 313

Query: 325 IGTKSDLYSTY---TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +  KSD  ++    T     +IS+ +   ++ L   ++  +  +  +   SIPS
Sbjct: 314 VYNKSDQKASEFIPTTTASIMISALSAADIDRLRYFLEEAVKQQMARYDVSIPS 367


>gi|304311327|ref|YP_003810925.1| hypothetical protein HDN1F_16900 [gamma proteobacterium HdN1]
 gi|301797060|emb|CBL45273.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 521

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK-ISDTAGIRE 279
           +I++LG +NAGKSSL NAL  +  A    +P TT +++   L+ EG     I DT G   
Sbjct: 288 RIMVLGRNNAGKSSLINALFGEVKAPTDTLPSTTDEIIPYQLEREGGTAALIFDTPGC-- 345

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN 309
            +  + +  +K   L   +ADLIL +   N
Sbjct: 346 DNPQLSERALKTCVL---SADLILWVTPAN 372


>gi|225430700|ref|XP_002264259.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 435

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 15/110 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + +LG  N GKS+L N +  + ++IVTD P TTR  +        Y + + DT G
Sbjct: 136 RSGY-VAVLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHRILGICSGPEYQMILYDTPG 194

Query: 277 IRET-----DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID 321
           + E      D ++ K     T     NAD +++L  +++ KE   P+ ID
Sbjct: 195 VIEKKMHKLDSMMMKNVRSATI----NADCVVVL--VDACKE---PQKID 235


>gi|16330625|ref|NP_441353.1| GTP-binding protein HflX [Synechocystis sp. PCC 6803]
 gi|1653117|dbj|BAA18033.1| GTP-binding protein; HflX [Synechocystis sp. PCC 6803]
          Length = 534

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 12/130 (9%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRD 256
           N++ SH S+ +     +    + I+G++NAGKS+L NAL + D+     +   +  TTR 
Sbjct: 343 NELQSHRSRLRNQRQQQAVPTVAIVGYTNAGKSTLLNALTQADIYAADQLFATLDPTTRR 402

Query: 257 VLTIDLDLEGY-LVKISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEINS--- 310
           +  +D + + Y  + ++DT G   +  D +V  +  + T  EV  ADL+L + +++    
Sbjct: 403 LSLLDPENQTYHPILLTDTVGFIHKLPDALV--DAFRATLEEVTEADLLLQVVDLSDRAW 460

Query: 311 KKEISFPKNI 320
           +++I+   NI
Sbjct: 461 RRQIASVANI 470


>gi|77411900|ref|ZP_00788232.1| GTP-binding protein [Streptococcus agalactiae CJB111]
 gi|77162060|gb|EAO73039.1| GTP-binding protein [Streptococcus agalactiae CJB111]
          Length = 372

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R+G  + ++G +N GKS+L NA+ +     +DV   +  PGTT D + I LD   Y 
Sbjct: 158 EKYRHGRDVYVVGVTNVGKSTLINAIIREITGSRDVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IFDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|260655937|ref|ZP_05861406.1| GTP-binding protein Era [Jonquetella anthropi E3_33 E1]
 gi|260629553|gb|EEX47747.1| GTP-binding protein Era [Jonquetella anthropi E3_33 E1]
          Length = 303

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 45/88 (51%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           + G  N GKSSL N L    +++VT  P TTRD +    + E   +   DT G+ E +  
Sbjct: 12  LAGRPNVGKSSLVNRLLDFRLSVVTPKPQTTRDAILGLYNDEDCQIVFVDTPGVHEPEHR 71

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311
           + +  + R    ++ AD+IL +  I+ +
Sbjct: 72  LGERLVDRALEALDEADVILYVVTIDDR 99


>gi|269866221|ref|XP_002652197.1| GTPase, predicted [Enterocytozoon bieneusi H348]
 gi|220062974|gb|EED41859.1| GTPase, predicted [Enterocytozoon bieneusi H348]
          Length = 155

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 8/135 (5%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N GKSSL N L  K V  V  IPG T+    I L  + YL+   D+ G+   +++ 
Sbjct: 6   VGYPNIGKSSLINILKNKQVCKVAPIPGETKVWQYITLMKDVYLI---DSPGVVPINNL- 61

Query: 285 EKEGIKRTFLEVEN-ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
            KE +    + VEN AD    + EI ++   +  K +  I      D +  + ++Y  L 
Sbjct: 62  -KEAVLHGAVRVENLADPDFYVAEIFNRAGFNEIKKLYCINFENIDDFFIEFAKKYKKLH 120

Query: 344 SSFTGEGLEELINKI 358
           +   G+    LI+KI
Sbjct: 121 AG--GQPNINLISKI 133


>gi|23308879|ref|NP_601147.2| GTPase [Corynebacterium glutamicum ATCC 13032]
 gi|21324710|dbj|BAB99333.1| GTPases [Corynebacterium glutamicum ATCC 13032]
          Length = 486

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 77/185 (41%), Gaps = 39/185 (21%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +I I G++NAGKSSL NA+    V    A+   +  TTR     D    G  V  +DT G
Sbjct: 260 QIAIAGYTNAGKSSLINAMTGAGVLVENALFATLDPTTRKAELAD----GRHVVFTDTVG 315

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL---------LLKEIN-----------SKKEISF 316
                     E  K T  EV  ADL+L          LK+I+           S   +  
Sbjct: 316 FVRHLPTSLVEAFKSTLEEVVEADLMLHVVDGSDPFPLKQIDAVNTVISDIVRSTGAVPP 375

Query: 317 PKNIDFIFIGTKSDLYSTYT-EEYDH------LISSFTGEGLEELINKIKSILSNKFKKL 369
           P+    I +  K D     T  E  H       +S+ TGEG++EL  +I+  L+++   L
Sbjct: 376 PE----IIVVNKIDQADPLTLAELRHAVDDVVFVSALTGEGIKELEARIELFLNSRDAHL 431

Query: 370 PFSIP 374
              IP
Sbjct: 432 LLKIP 436


>gi|323342238|ref|ZP_08082470.1| DNA mismatch repair protein MutS [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463350|gb|EFY08544.1| DNA mismatch repair protein MutS [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 835

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 48/202 (23%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA-IVTDIPGT-------- 253
           +  H +QG + +++  GYK+ I+      K +    + K+DV  IVT  PGT        
Sbjct: 67  VPHHAAQGYIQKLVAAGYKVAIVEQVEDPKEA--KGIVKRDVVEIVT--PGTYFEMDDNE 122

Query: 254 TRDVLTIDLDLEGYLVKISDTA-----GIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           TR++ +I LDL    +   D        IR  +D VE               +I +L++ 
Sbjct: 123 TREIASITLDLVYATIVSCDIVSGNLRAIRVMNDFVE---------------IIKVLQQF 167

Query: 309 NSKKEISFPKNIDFIFIG---TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
             K EI   ++ D   I     K+++Y +Y EE             +E+ ++  +I   +
Sbjct: 168 QVK-EIVVSEHFDSKIINEIKNKTEIYVSYQEEL-----------ADEVQHQDPTIRKTQ 215

Query: 366 FKKLPFSIPSHKRHLYHLSQTV 387
            + + + I +HKR L HLS+ V
Sbjct: 216 ARLIQYLIYTHKRSLNHLSEVV 237


>gi|239637592|ref|ZP_04678564.1| ribosome biogenesis GTPase YqeH [Staphylococcus warneri L37603]
 gi|239596810|gb|EEQ79335.1| ribosome biogenesis GTPase YqeH [Staphylococcus warneri L37603]
          Length = 366

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 19/149 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R+   + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD + ++   
Sbjct: 158 RDQEDVYIVGTTNVGKSTLINKLIELSVGEKDVVTTSRFPGTTLDMIDIPLDEKSFMF-- 215

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFI------ 323
            DT GI ++  +      K   L +   ++   + ++N  + + F     ID++      
Sbjct: 216 -DTPGIIQSHQMTHFVTEKELKLVMPKKEIKQRVYQLNEGQTLFFGGLARIDYVSGGKRP 274

Query: 324 ---FIGTKSDLYSTYTEEYDHLISSFTGE 349
              F   + +++ T TE+ + L  +  G+
Sbjct: 275 LVCFFSNELNIHRTKTEKANELWKNHIGD 303


>gi|295087782|emb|CBK69305.1| Predicted GTPases [Bacteroides xylanisolvens XB1A]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 18/117 (15%)

Query: 173 EADLDF---SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           +ADLDF   S EE +++ SS+     I      I    +  +L + I  G  +V +G S 
Sbjct: 160 KADLDFDRQSVEEQIKHISSQ-----IPVFFTSIHQLETIVRLRKSISEGETVVFVGSSG 214

Query: 230 AGKSSLFNALAKKDVAIVTDIP---GTTRDVLT----IDLDLEGYLVKISDTAGIRE 279
            GKSSL NAL +K V + +DI    G  R   T    + +D  G L+   DT G+RE
Sbjct: 215 VGKSSLVNALCEKPVLLTSDISLSTGKGRHTSTRREMVLMDSSGVLI---DTPGVRE 268


>gi|291614750|ref|YP_003524907.1| ferrous iron transport protein B [Sideroxydans lithotrophicus ES-1]
 gi|291584862|gb|ADE12520.1| ferrous iron transport protein B [Sideroxydans lithotrophicus ES-1]
          Length = 595

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I +LG  N GKS+LFN +     A V + PG T ++L+  + L   +V+I D  GI + 
Sbjct: 3   RIALLGMPNTGKSTLFNRM-TGGAARVGNWPGITVELLSGKILLGSDMVEIIDLPGIYDL 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
               + E + R FL     DL L++
Sbjct: 62  HGFSDDEQVVRHFLHDNVPDLALVI 86


>gi|114320504|ref|YP_742187.1| GTP-binding protein Era [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226898|gb|ABI56697.1| GTP-binding protein Era [Alkalilimnicola ehrlichii MLHE-1]
          Length = 315

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +IR G+ + ++G  N GKS+L N L  + ++IVT  P TTR  +      +G  +   DT
Sbjct: 21  LIRCGH-VALVGRPNVGKSTLLNQLLGQKISIVTRKPQTTRQRILGVCHRDGAQIVYVDT 79

Query: 275 AGIRETDDIVEKEGIKRTFLE-VENADLILLL 305
            G+ +  D      + RT    + + DL++ L
Sbjct: 80  PGLHQRRDKALNRYLNRTAANALADVDLVVFL 111


>gi|299750731|ref|XP_001829784.2| hypothetical protein CC1G_05993 [Coprinopsis cinerea okayama7#130]
 gi|298409044|gb|EAU92006.2| hypothetical protein CC1G_05993 [Coprinopsis cinerea okayama7#130]
          Length = 303

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIV-TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +V+ G + AGKSS  N LA +DV    +   G T   L   L +E    +I DTAG+ ET
Sbjct: 60  LVVFGETGAGKSSFINMLAGRDVTKASSSAKGVTSKNLEFSLKIENQDYRIWDTAGLNET 119

Query: 281 D 281
           D
Sbjct: 120 D 120


>gi|167973106|ref|ZP_02555383.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|167974818|ref|ZP_02557095.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|167976019|ref|ZP_02558296.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|167988518|ref|ZP_02570189.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|168361987|ref|ZP_02695166.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|195867678|ref|ZP_03079680.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198273611|ref|ZP_03206146.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|209554309|ref|YP_002284666.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|225550577|ref|ZP_03771526.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225551103|ref|ZP_03772049.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|238058989|sp|B5ZB76|ENGB_UREU1 RecName: Full=Probable GTP-binding protein EngB
 gi|171903533|gb|EDT49822.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|184209057|gb|EDU06100.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188018849|gb|EDU56889.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188997724|gb|EDU66821.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|195659574|gb|EDX52954.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195660735|gb|EDX53990.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198249639|gb|EDY74420.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|209541810|gb|ACI60039.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|225378918|gb|EEH01283.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|225379731|gb|EEH02093.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 208

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 6/54 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID------LDLEGY 267
           ++I ++G SN GKSSL NALA + +A  ++ PG T+ V   D      +DL GY
Sbjct: 20  FEICVIGRSNVGKSSLINALANEKIARTSNTPGRTQLVNFFDFNSFRLVDLPGY 73


>gi|154509437|ref|ZP_02045079.1| hypothetical protein ACTODO_01968 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799071|gb|EDN81491.1| hypothetical protein ACTODO_01968 [Actinomyces odontolyticus ATCC
           17982]
          Length = 412

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           E +  +  L+ D ++ I      E  R G+ + I+G  N GKS+L NAL    +AI +  
Sbjct: 90  EAMTSLASLREDAAATIEMPDFPEDFRAGF-VSIVGRPNVGKSTLTNALVGHKIAITSGR 148

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAG 276
           P TTR  +   +  + Y + + DT G
Sbjct: 149 PETTRHNIRGIVHGDNYQLVLVDTPG 174


>gi|312880131|ref|ZP_07739931.1| ribosome biogenesis GTP-binding protein YsxC [Aminomonas
           paucivorans DSM 12260]
 gi|310783422|gb|EFQ23820.1| ribosome biogenesis GTP-binding protein YsxC [Aminomonas
           paucivorans DSM 12260]
          Length = 208

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 9/56 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---------LDLEGY 267
           +IVI G SN GKSSL NAL    VA V+  PG TR +   D         +DL GY
Sbjct: 25  EIVIAGRSNVGKSSLINALLGAKVAHVSGTPGKTRSINFFDVSATPPFCLVDLPGY 80


>gi|163852243|ref|YP_001640286.1| GTP-binding proten HflX [Methylobacterium extorquens PA1]
 gi|218531002|ref|YP_002421818.1| GTP-binding proten HflX [Methylobacterium chloromethanicum CM4]
 gi|163663848|gb|ABY31215.1| GTP-binding proten HflX [Methylobacterium extorquens PA1]
 gi|218523305|gb|ACK83890.1| GTP-binding proten HflX [Methylobacterium chloromethanicum CM4]
          Length = 471

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 45/195 (23%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--------EGY 267
           R  Y IV L G++NAGKS+LFNAL K +V          +D+L   LD          G 
Sbjct: 225 RVPYPIVALVGYTNAGKSTLFNALTKAEV--------RAQDMLFATLDPTARATKLPHGE 276

Query: 268 LVKISDTAGI------------RET-DDIVEKE------GIKRTFLEVENADLILLLKEI 308
            V +SDT G             R T +D++E +       +     + +  D+  +L+E+
Sbjct: 277 TVILSDTVGFISDLPTSLIAAFRATLEDVIEADILLHVRDVSHGDTQAQAEDVEGVLREL 336

Query: 309 ----NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEELINKIK 359
               ++++ I      D +  G ++ L +             L+S+ TGEGL EL  +I+
Sbjct: 337 GIEADAERIIEVWNKADLLDEGERTRLLNLSAAHRGAGPAPILVSALTGEGLPELTERIE 396

Query: 360 SILSNKFKKLPFSIP 374
             ++        ++P
Sbjct: 397 GQVARARSTFAVTLP 411


>gi|310659078|ref|YP_003936799.1| GTP-binding protein era [Clostridium sticklandii DSM 519]
 gi|308825856|emb|CBH21894.1| GTP-binding protein Era [Clostridium sticklandii]
          Length = 305

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 47/84 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N+L  + +AI++D P TTR+ +    + +   +   DT GI++  
Sbjct: 16  VSIIGRPNVGKSTLMNSLVGEKIAIMSDKPQTTRNQIRAIYNDDEMQIVFMDTPGIQKPQ 75

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +    +K +   + + D+IL +
Sbjct: 76  NRLGDYMLKVSHSSMRDTDVILFV 99


>gi|297379882|gb|ADI34769.1| ferrous iron transport protein B [Helicobacter pylori v225d]
          Length = 650

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL+   +  V +  G T D + + L  +   + I D  G    +
Sbjct: 12  VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 70

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 71  DFTTEEKVTKDFLEKGQYDLIL 92


>gi|188527468|ref|YP_001910155.1| iron(II) transport protein [Helicobacter pylori Shi470]
 gi|188143708|gb|ACD48125.1| iron(II) transport protein [Helicobacter pylori Shi470]
          Length = 648

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL+   +  V +  G T D + + L  +   + I D  G    +
Sbjct: 12  VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 70

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 71  DFTTEEKVTKDFLEKGQYDLIL 92


>gi|25028389|ref|NP_738443.1| putative GTP-binding protein HflX [Corynebacterium efficiens
           YS-314]
 gi|259507446|ref|ZP_05750346.1| GTP-binding protein [Corynebacterium efficiens YS-314]
 gi|23493674|dbj|BAC18643.1| putative GTP-binding protein HflX [Corynebacterium efficiens
           YS-314]
 gi|259164934|gb|EEW49488.1| GTP-binding protein [Corynebacterium efficiens YS-314]
          Length = 535

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 79/182 (43%), Gaps = 33/182 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           +I I G++NAGKSSL NA+    V +V D    T D  T   +L +G  V  +DT G   
Sbjct: 296 QIAIAGYTNAGKSSLINAMTGAGV-LVEDALFATLDPTTRKAELADGRHVVFTDTVGFIR 354

Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKE-----------INSKKEISFPKN 319
                  E  K T  EV  ADL+L          LK+           I +  E   P+ 
Sbjct: 355 HLPTSLVEAFKSTLEEVLEADLMLHVVDGSDPFPLKQIEAVNSVISDIIRTTGETPPPE- 413

Query: 320 IDFIFIGTKSDLYSTYT-EEYDH------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              I +  K D     T  E  H       +S+ TGEG++EL  +I+  L+++  +L   
Sbjct: 414 ---IIVVNKIDQADPLTLAELRHALDDVVFVSALTGEGIKELEARIELFLNSRDTRLTVL 470

Query: 373 IP 374
           IP
Sbjct: 471 IP 472


>gi|255263172|ref|ZP_05342514.1| GTP-binding protein HflX [Thalassiobium sp. R2A62]
 gi|255105507|gb|EET48181.1| GTP-binding protein HflX [Thalassiobium sp. R2A62]
          Length = 452

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 25/170 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN L   +V    D+   T D     +DL  G  + +SDT G    
Sbjct: 210 VALVGYTNAGKSTLFNRLTGAEV-FAKDMLFATLDPTMRKVDLPTGDEIILSDTVGFISD 268

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF----IGTKSDLYSTYT 336
                    + T  EV +ADLIL +++I+S       +++  I     +G  + L   + 
Sbjct: 269 LPTELVASFRATLEEVLDADLILHVRDISSADTHEQSRDVMEILTKLGVGQDAPLLEVWN 328

Query: 337 E----EYD---------------HLISSFTGEGLEELINKIKSILSNKFK 367
           +    E D                + SS TGEG++ L+  I  IL+   K
Sbjct: 329 KIDQVELDVRKGLNTASDRDDAIFVTSSVTGEGMDPLLAAISDILNAAMK 378


>gi|261419530|ref|YP_003253212.1| GTP-binding proten HflX [Geobacillus sp. Y412MC61]
 gi|319766346|ref|YP_004131847.1| GTP-binding proten HflX [Geobacillus sp. Y412MC52]
 gi|261375987|gb|ACX78730.1| GTP-binding proten HflX [Geobacillus sp. Y412MC61]
 gi|317111212|gb|ADU93704.1| GTP-binding proten HflX [Geobacillus sp. Y412MC52]
          Length = 415

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 17/174 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG 276
             +++ ++G++NAGKS++FN L   D ++  ++   T D LT    L  GY V ++DT G
Sbjct: 195 QAFQVALVGYTNAGKSTIFNRLTAAD-SLEENLLFATLDPLTRKCVLPCGYTVLVTDTVG 253

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIF 324
             +          + T  EV  ADL+L + + +    ++  +            +I  + 
Sbjct: 254 FIQDLPTTLVAAFRSTLEEVTEADLLLHVVDSSHPDYVAHERTVSRLLAELGASSIPMVT 313

Query: 325 IGTKSDLYSTY---TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +  KSD  ++    T     +IS+ +   ++ L   ++  +  +  +   SIPS
Sbjct: 314 VYNKSDQKASEFIPTTTASIMISALSAADIDRLRYFLEEAVKQQMTRYDVSIPS 367


>gi|118589883|ref|ZP_01547287.1| GTP binding protein-like [Stappia aggregata IAM 12614]
 gi|118437380|gb|EAV44017.1| GTP binding protein-like [Stappia aggregata IAM 12614]
          Length = 426

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 31/221 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN + + DV    D+   T D     + L  G  + +SDT G    
Sbjct: 202 VALVGYTNAGKSTLFNRMTESDV-FAKDLLFATLDPTLRKVALPHGKEIILSDTVGFISD 260

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI----------NSKKE--------------ISF 316
                    + T  EV  ADLIL +++I          + KK               I  
Sbjct: 261 LPTHLVAAFRATLEEVLEADLILHVRDISHPDTEAQAEDVKKTLTDLGVDALTGAPIIEV 320

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
              ID +    +  L     +E    +S+ TGEG+E+L  ++ + ++     L   IP  
Sbjct: 321 WNKIDCLDPAYREKLLEDAGDEGPIALSALTGEGIEQLYTRVDTFMAQHDDILTVKIPVA 380

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
              L       +  +MA + E+    D +   +R++    G
Sbjct: 381 DGALL-----AKLYQMAEVLERTDAEDFVTAEVRVSDKQRG 416


>gi|284048360|ref|YP_003398699.1| GTP-binding proten HflX [Acidaminococcus fermentans DSM 20731]
 gi|283952581|gb|ADB47384.1| GTP-binding proten HflX [Acidaminococcus fermentans DSM 20731]
          Length = 604

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 33/205 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           FL++ I       K  +  RN     ++ ++G++NAGKS+L N L   D+    D    T
Sbjct: 359 FLEDQIRRMKGNRKQQQRARNKNEVKQVCLVGYTNAGKSTLLNTLTHSDI-YAQDQLFAT 417

Query: 255 RDVLTIDLDL-EGYLVKISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            D  T  LDL +G    ++DT G   R    +V     K T   V++AD  LLL  ++S 
Sbjct: 418 LDPTTRQLDLPDGSSCTLTDTVGFIQRLPHQLV--AAFKSTLEVVKDAD--LLLHVVDSS 473

Query: 312 KEISFPK--------------NIDFIFIGTKSDLYSTYT------EEYDH--LISSFTGE 349
            E++  +              +   + +  K D  S +       E+ D+   IS+ TGE
Sbjct: 474 HELAREQTEAVYQVLQELGVTDKPILTVYNKVDRLSQHEGLRRRLEQEDNALCISARTGE 533

Query: 350 GLEELINKIKSILSNKFKKLPFSIP 374
           G+ EL+  +  +L     +    IP
Sbjct: 534 GVPELLETLARLLGQDRVEADLCIP 558


>gi|256845852|ref|ZP_05551310.1| GTP-binding protein Era [Fusobacterium sp. 3_1_36A2]
 gi|256719411|gb|EEU32966.1| GTP-binding protein Era [Fusobacterium sp. 3_1_36A2]
          Length = 298

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ +         +++ D+IL L
Sbjct: 66  HLLGEYMTNIAVKILKDVDIILFL 89


>gi|237750688|ref|ZP_04581168.1| ferrous iron transporter B [Helicobacter bilis ATCC 43879]
 gi|229373778|gb|EEO24169.1| ferrous iron transporter B [Helicobacter bilis ATCC 43879]
          Length = 660

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+V++G  N GKSSL NAL+   +  V +  G T +     L+ + Y + + D  G    
Sbjct: 5   KVVLVGQPNVGKSSLINALSNAKMR-VGNFSGVTLEKAEATLNYKDYTITMIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           +    +E + + FL+ E+ D+IL
Sbjct: 64  NGYTTEERVCKDFLDNESYDIIL 86


>gi|225390164|ref|ZP_03759888.1| hypothetical protein CLOSTASPAR_03914 [Clostridium asparagiforme
           DSM 15981]
 gi|225043758|gb|EEG54004.1| hypothetical protein CLOSTASPAR_03914 [Clostridium asparagiforme
           DSM 15981]
          Length = 435

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 3/58 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGI 277
           I   G  NAGKSS+ NA+  +D+A+V+D+ GTT D +   ++L   G +V I DT GI
Sbjct: 14  IGFFGKRNAGKSSVLNAVTGQDLAVVSDVCGTTTDPVVKAMELLPLGPVVMI-DTPGI 70


>gi|85703310|ref|ZP_01034414.1| GTP-binding protein HflX [Roseovarius sp. 217]
 gi|85672238|gb|EAQ27095.1| GTP-binding protein HflX [Roseovarius sp. 217]
          Length = 424

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 26/168 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           + ++G++NAGKS+LFN L   DV +  D+   T D  +  + L   G  V +SDT G   
Sbjct: 205 VALVGYTNAGKSTLFNRLTGADV-MAKDMLFATLDPTMRRVALPEGGPEVILSDTVGFIS 263

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------------IG 326
                     + T  EV +ADLI  +++I+  + +S  +++  I              I 
Sbjct: 264 DLPTELVAAFRATLEEVLSADLICHVRDISHPETVSQSRDVAAILESLGVSDKTPQIEIW 323

Query: 327 TKSDLYS--------TYTEEYDHL--ISSFTGEGLEELINKIKSILSN 364
            K D           T  E  D +  IS+ TG+G+ +L+  I + L++
Sbjct: 324 NKIDQLEDEARAAAVTQAERQDDVLAISAITGQGINDLVAAIGAKLAD 371


>gi|220905798|ref|YP_002481109.1| GTP-binding protein Era [Cyanothece sp. PCC 7425]
 gi|219862409|gb|ACL42748.1| GTP-binding protein Era [Cyanothece sp. PCC 7425]
          Length = 315

 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 24/164 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + ++G  N GKS+L N L  + VAI + +  TTR+ L   L      +   DT G
Sbjct: 22  KSGF-VALIGRPNVGKSTLMNQLIGQKVAITSPVAQTTRNRLRGILTTSTAQLIFVDTPG 80

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT- 327
           I +    + +  +K   L +   DL+L + + + K         E+   K    + +G  
Sbjct: 81  IHKPHHSLGEVLVKNATLAIAAVDLVLFIVDGSVKAGGGDRFVAEL-LQKAKTPVMVGVN 139

Query: 328 KSDLYS---TYTEEYDHLI----------SSFTGEGLEELINKI 358
           KSD  +   T    YD LI          S+ TGEGL  L  ++
Sbjct: 140 KSDAQTDPDTLDRSYDSLIAEQGWPLVKFSALTGEGLAALQTQL 183


>gi|170728494|ref|YP_001762520.1| GTP-binding proten HflX [Shewanella woodyi ATCC 51908]
 gi|169813841|gb|ACA88425.1| GTP-binding proten HflX [Shewanella woodyi ATCC 51908]
          Length = 432

 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 30/191 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFN+L   DV     +  T    L   LDL+   + ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNSLTTSDVYAADQLFATLDPTLR-KLDLDDGSIILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFIG 326
             D+V     K T  E   ADL+L + + + +             KEI   ++I  + + 
Sbjct: 259 PHDLV--AAFKATLQETREADLLLHIVDCHDENMGDNFEQVQLVLKEIG-AEDIPQLIVC 315

Query: 327 TKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            K DL      + D+          +S+   +GL  L   I SI+      L   IP+  
Sbjct: 316 NKIDLLDEVNPKIDYDDEGVPIRVWVSAQKQQGLVLLKEAINSIVGKTTLSLNLEIPATA 375

Query: 378 RHLYHLSQTVR 388
            H  +L Q  R
Sbjct: 376 GH--YLGQLYR 384


>gi|15642826|ref|NP_227867.1| iron(II) transport protein B [Thermotoga maritima MSB8]
 gi|281412111|ref|YP_003346190.1| ferrous iron transport protein B [Thermotoga naphthophila RKU-10]
 gi|4980537|gb|AAD35145.1|AE001692_2 iron(II) transport protein B [Thermotoga maritima MSB8]
 gi|281373214|gb|ADA66776.1| ferrous iron transport protein B [Thermotoga naphthophila RKU-10]
          Length = 669

 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 70/167 (41%), Gaps = 27/167 (16%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI +   K+ + G  N GK+SLFNAL       V + PG T +        +GY + + D
Sbjct: 11  EISQKIVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLID 69

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-INSKKE-------ISFPKNIDFIF- 324
             G          E I R +L   +ADL++L+ + +N ++        +   K +     
Sbjct: 70  LPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMT 129

Query: 325 -------IGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKI 358
                   G K D Y    E   HL       SS TGEGLEEL  KI
Sbjct: 130 AIDEAKKTGMKIDRY----ELQKHLGIPVVFTSSVTGEGLEELKEKI 172


>gi|305431551|ref|ZP_07400725.1| ferrous iron transporter B [Campylobacter coli JV20]
 gi|304445358|gb|EFM37997.1| ferrous iron transporter B [Campylobacter coli JV20]
          Length = 251

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL K ++  V +  G T +  +     + Y  ++ D  G    
Sbjct: 5   KIALIGQPNVGKSLLINALCKANMK-VGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D   EKE I R FL   + D+I+
Sbjct: 64  DGYSEKEKITRHFLNQNDYDVIV 86


>gi|254168276|ref|ZP_04875122.1| GTPase, putative [Aciduliprofundum boonei T469]
 gi|197622785|gb|EDY35354.1| GTPase, putative [Aciduliprofundum boonei T469]
          Length = 317

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 28/156 (17%)

Query: 222 IVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           +VI G+ N GKS L   +  AK ++A     P TT+ ++   ++++G  V+I DT G+  
Sbjct: 165 VVIAGYPNVGKSELVAKMSTAKPEIA---SYPFTTKGIVVGHMEIKGRRVQIVDTPGLLD 221

Query: 279 ---ETDDIVEKEGIKRTFLEVEN-ADLILLL------------KEINSKKEISFPKNIDF 322
              E  + +EKE I    L ++  AD+I+ L            +++   KEI     I  
Sbjct: 222 RPLEKRNRIEKEAI----LALKYLADVIVFLLDPSETCGYSMDEQLKLLKEIKKDFGIPI 277

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           + +  K DL  T +      IS+ TGEGL++L+  I
Sbjct: 278 LEVENKVDLLRTDSPRMK--ISAKTGEGLDKLVENI 311


>gi|148270008|ref|YP_001244468.1| ferrous iron transport protein B [Thermotoga petrophila RKU-1]
 gi|147735552|gb|ABQ46892.1| ferrous iron transport protein B [Thermotoga petrophila RKU-1]
          Length = 667

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 70/167 (41%), Gaps = 27/167 (16%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI +   K+ + G  N GK+SLFNAL       V + PG T +        +GY + + D
Sbjct: 9   EISQKIVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLID 67

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-INSKKE-------ISFPKNIDFIF- 324
             G          E I R +L   +ADL++L+ + +N ++        +   K +     
Sbjct: 68  LPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMT 127

Query: 325 -------IGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKI 358
                   G K D Y    E   HL       SS TGEGLEEL  KI
Sbjct: 128 AIDEAKKTGMKIDRY----ELQKHLGIPVVFTSSVTGEGLEELKEKI 170


>gi|116670027|ref|YP_830960.1| small GTP-binding protein [Arthrobacter sp. FB24]
 gi|116610136|gb|ABK02860.1| small GTP-binding protein [Arthrobacter sp. FB24]
          Length = 522

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 27/179 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L    V    A+   +  T R   T D    G    ++DT G 
Sbjct: 303 VAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVRKAETAD----GLGYTLADTVGF 358

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISF---------PKNIDFIFI 325
             +      E  + T  EV ++DLIL + ++   + + +I+           + +  I +
Sbjct: 359 VRSLPTQLVEAFRSTLEEVADSDLILHVVDVSHPDPEGQIAAVRAVFSEVDARKVPEIIV 418

Query: 326 GTKSDLYSTYT------EEYDH-LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
             K+D    +        E  H ++S+ TG+G+ EL+  I   +     K+   IP ++
Sbjct: 419 LNKADAADPFVVERLKQREPRHVVVSARTGQGIAELLKAISESIPRPSVKMELLIPYNR 477


>gi|108804275|ref|YP_644212.1| small GTP-binding protein domain-containing protein [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765518|gb|ABG04400.1| Small GTP-binding protein domain [Rubrobacter xylanophilus DSM
           9941]
          Length = 437

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 20/156 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V + PGTTRD      +  G    + DT G+  + 
Sbjct: 10  VAVVGAPNVGKSSLVNRILGRRRAVVAEEPGTTRDRGYARAEWAGREFLLVDTGGMEPSA 69

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKNIDFIF 324
            + +E     +  + VE AD+I+ L +                + S+ E+    N     
Sbjct: 70  RMGLEALVTLQARIAVEEADVIVHLTDARTGPTEADAAIARELLRSRAEVVLAVN-KLDD 128

Query: 325 IGTKSDLYSTYT--EEYDHLISSFTGEGLEELINKI 358
              +S+ Y  Y+  E   H +S+  G G+ +L++++
Sbjct: 129 PADESERYRFYSLGEGEPHPVSALHGLGVGDLLDEV 164



 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKIS--DTAGI 277
           I I+G  N GKS+L N L  +  A+V++  GTT DV+   +++ L+G   + +  DTAG+
Sbjct: 182 IAIIGRPNVGKSTLLNRLLGEQRAVVSEAAGTTTDVVESEVEVQLDGGRERFALLDTAGV 241


>gi|62390780|ref|YP_226182.1| GTPase [Corynebacterium glutamicum ATCC 13032]
 gi|41326118|emb|CAF20281.1| GTPase [Corynebacterium glutamicum ATCC 13032]
          Length = 509

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 77/185 (41%), Gaps = 39/185 (21%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +I I G++NAGKSSL NA+    V    A+   +  TTR     D    G  V  +DT G
Sbjct: 283 QIAIAGYTNAGKSSLINAMTGAGVLVENALFATLDPTTRKAELAD----GRHVVFTDTVG 338

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL---------LLKEIN-----------SKKEISF 316
                     E  K T  EV  ADL+L          LK+I+           S   +  
Sbjct: 339 FVRHLPTSLVEAFKSTLEEVVEADLMLHVVDGSDPFPLKQIDAVNTVISDIVRSTGAVPP 398

Query: 317 PKNIDFIFIGTKSDLYSTYT-EEYDH------LISSFTGEGLEELINKIKSILSNKFKKL 369
           P+    I +  K D     T  E  H       +S+ TGEG++EL  +I+  L+++   L
Sbjct: 399 PE----IIVVNKIDQADPLTLAELRHAVDDVVFVSALTGEGIKELEARIELFLNSRDAHL 454

Query: 370 PFSIP 374
              IP
Sbjct: 455 LLKIP 459


>gi|330999189|ref|ZP_08322908.1| ribosome biogenesis GTPase Era [Parasutterella excrementihominis
           YIT 11859]
 gi|329575389|gb|EGG56933.1| ribosome biogenesis GTPase Era [Parasutterella excrementihominis
           YIT 11859]
          Length = 303

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 5/52 (9%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID 261
           E  R+GY + ++G  N GKS+L NAL  + V+I +  P TTRD    VLT D
Sbjct: 11  EDFRSGY-VAVIGRPNVGKSTLINALVGEKVSITSKKPQTTRDRIMGVLTTD 61


>gi|303257000|ref|ZP_07343014.1| GTP-binding protein Era [Burkholderiales bacterium 1_1_47]
 gi|302860491|gb|EFL83568.1| GTP-binding protein Era [Burkholderiales bacterium 1_1_47]
          Length = 303

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 5/52 (9%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID 261
           E  R+GY + ++G  N GKS+L NAL  + V+I +  P TTRD    VLT D
Sbjct: 11  EDFRSGY-VAVIGRPNVGKSTLINALVGEKVSITSKKPQTTRDRIMGVLTTD 61


>gi|237742515|ref|ZP_04572996.1| GTP binding protein [Fusobacterium sp. 4_1_13]
 gi|229430163|gb|EEO40375.1| GTP binding protein [Fusobacterium sp. 4_1_13]
          Length = 298

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ +         +++ D+IL L
Sbjct: 66  HLLGEYMTNIAVKILKDVDIILFL 89


>gi|254302672|ref|ZP_04970030.1| GTP-binding protein [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322864|gb|EDK88114.1| GTP-binding protein [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 296

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ +         +++ D+IL L
Sbjct: 66  HLLGEYMTNIAVKILKDVDIILFL 89


>gi|119872584|ref|YP_930591.1| small GTP-binding protein [Pyrobaculum islandicum DSM 4184]
 gi|119673992|gb|ABL88248.1| small GTP-binding protein [Pyrobaculum islandicum DSM 4184]
          Length = 372

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++VI G+++AGK++LFN +  ++  +V   P  T +  +  LDL G  + ++DT G  + 
Sbjct: 187 EVVITGYTSAGKTTLFNKMVGEN-KLVDGKPFATLETYSRALDLWGRRIVLTDTIGFIDD 245

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
              V  E    T  E+ +AD+ILL+
Sbjct: 246 LPPVLIESFHSTLQEIIDADIILLV 270


>gi|34764123|ref|ZP_00144997.1| GTP binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27886109|gb|EAA23411.1| GTP binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 298

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ +         +++ D+IL L
Sbjct: 66  HLLGEYMTNIAVKILKDVDIILFL 89


>gi|254392577|ref|ZP_05007754.1| GTP-binding protein Era [Streptomyces clavuligerus ATCC 27064]
 gi|294812543|ref|ZP_06771186.1| GTP-binding protein Era [Streptomyces clavuligerus ATCC 27064]
 gi|197706241|gb|EDY52053.1| GTP-binding protein Era [Streptomyces clavuligerus ATCC 27064]
 gi|294325142|gb|EFG06785.1| GTP-binding protein Era [Streptomyces clavuligerus ATCC 27064]
          Length = 317

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 12/145 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R+G+   + G  NAGKS+L NAL  + VAI ++ P TTR  V  I    E  L+ + DT 
Sbjct: 17  RSGFACFV-GRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEAQLI-LVDTP 74

Query: 276 GIRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEISFPKNIDFIFIG 326
           G+ +   ++ +   + ++ T+ EV+       AD  L   +    KE++  K    + I 
Sbjct: 75  GLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDRFIAKELAGIKKTPKVAIV 134

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGL 351
           TK+DL  + T     L  S  GE L
Sbjct: 135 TKTDLVDSRTLAEQLLAVSRLGEEL 159


>gi|332638513|ref|ZP_08417376.1| GTPase YqeH [Weissella cibaria KACC 11862]
          Length = 380

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 9/76 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R G  + ++G +N GKS+L N + K      KDV   +  PGTT D + I LD + +
Sbjct: 169 EKYREGRSVYVVGVTNVGKSTLINQIIKDATGDSKDVITTSRFPGTTLDRIEIPLDDDTF 228

Query: 268 LVKISDTAGIRETDDI 283
           ++   DT GI   D +
Sbjct: 229 II---DTPGIIHQDQM 241


>gi|293189528|ref|ZP_06608248.1| GTP-binding protein Era [Actinomyces odontolyticus F0309]
 gi|292821618|gb|EFF80557.1| GTP-binding protein Era [Actinomyces odontolyticus F0309]
          Length = 412

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           E +  +  L+ D ++ I      E  R G+ + I+G  N GKS+L NAL    +AI +  
Sbjct: 90  EAMTSLASLREDAAATIEMPDFPEDFRAGF-VSIVGRPNVGKSTLTNALVGHKIAITSGR 148

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAG 276
           P TTR  +   +  + Y + + DT G
Sbjct: 149 PETTRHNIRGIVHGDNYQLVLVDTPG 174


>gi|254561989|ref|YP_003069084.1| GTPase [Methylobacterium extorquens DM4]
 gi|254269267|emb|CAX25233.1| putative GTPase (HflX) [Methylobacterium extorquens DM4]
          Length = 471

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 45/195 (23%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--------EGY 267
           R  Y IV L G++NAGKS+LFNAL K +V          +D+L   LD          G 
Sbjct: 225 RVPYPIVALVGYTNAGKSTLFNALTKAEV--------RAQDMLFATLDPTARATKLPHGE 276

Query: 268 LVKISDTAGI------------RET-DDIVEKE------GIKRTFLEVENADLILLLKEI 308
            V +SDT G             R T +D++E +       +     + +  D+  +L+E+
Sbjct: 277 TVILSDTVGFISDLPTSLIAAFRATLEDVIEADILLHVRDVSHGDTQAQAEDVEGVLREL 336

Query: 309 ----NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEELINKIK 359
               ++++ I      D +  G ++ L +             L+S+ TGEGL EL  +I+
Sbjct: 337 GIEADAERIIEVWNKADLLDEGERTRLLNLSAAHRGAGPAPILVSALTGEGLPELTERIE 396

Query: 360 SILSNKFKKLPFSIP 374
             ++        ++P
Sbjct: 397 GQVARARSTFAVTLP 411


>gi|258404222|ref|YP_003196964.1| GTP-binding protein Era [Desulfohalobium retbaense DSM 5692]
 gi|257796449|gb|ACV67386.1| GTP-binding protein Era [Desulfohalobium retbaense DSM 5692]
          Length = 312

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G   R+G  + I+G  NAGKS+L N    + VAIV+  P TTR+ ++  L  +   V   
Sbjct: 11  GGTYRSGL-VAIIGPPNAGKSTLLNQFLGQKVAIVSPKPQTTRNQISGILSTDEAQVVFL 69

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           DT G+ ++     +  +   +  +  ++ +LL+
Sbjct: 70  DTPGVHKSGQRFNRYMVDAAWRALTASEAVLLV 102


>gi|145496666|ref|XP_001434323.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401448|emb|CAK66926.1| unnamed protein product [Paramecium tetraurelia]
          Length = 415

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 20/130 (15%)

Query: 165 LTHIR-SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI-------SSHISQGKLGEII 216
           L H+R  F       + ++   N SS  +    L  + D+       S  I   KL E+I
Sbjct: 186 LAHLRREFATVLFKANTQQQQSNLSSASIYKKTLSQRQDLADDLTSSSKAIGADKLLELI 245

Query: 217 RNGYK---------IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +N  K         + ++G+ N GKSS+ N+L +     V+  PG T+ +  + +D +  
Sbjct: 246 KNYSKNDGVKSSVTVGVIGYPNVGKSSVINSLKRSKACAVSSTPGFTKGLQEVVIDSQ-- 303

Query: 268 LVKISDTAGI 277
            VKI D  G+
Sbjct: 304 -VKIIDCPGV 312


>gi|317178953|dbj|BAJ56741.1| iron(II) transport protein [Helicobacter pylori F30]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL+   +  V +  G T D + + L  +   + I D  G    +
Sbjct: 8   VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 66

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 67  DFTTEEKVTKDFLEKGQYDLIL 88


>gi|238927458|ref|ZP_04659218.1| GTP-binding protein Era [Selenomonas flueggei ATCC 43531]
 gi|238884740|gb|EEQ48378.1| GTP-binding protein Era [Selenomonas flueggei ATCC 43531]
          Length = 299

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NAL  + +AI++D P TTR  +   L  E   +   DT G+    
Sbjct: 9   VAVIGRPNVGKSTLINALIGQKIAIMSDKPQTTRSRILCILTEEDAQIIFLDTPGVHRPQ 68

Query: 282 D 282
           D
Sbjct: 69  D 69


>gi|149025508|ref|ZP_01836441.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP23-BS72]
 gi|147929380|gb|EDK80377.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP23-BS72]
          Length = 283

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           ++ +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 122 FRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|110802047|ref|YP_699296.1| GTP-binding protein Era [Clostridium perfringens SM101]
 gi|168204746|ref|ZP_02630751.1| GTP-binding protein Era [Clostridium perfringens E str. JGS1987]
 gi|168208717|ref|ZP_02634342.1| GTP-binding protein Era [Clostridium perfringens B str. ATCC 3626]
 gi|168212948|ref|ZP_02638573.1| GTP-binding protein Era [Clostridium perfringens CPE str. F4969]
 gi|168215642|ref|ZP_02641267.1| GTP-binding protein Era [Clostridium perfringens NCTC 8239]
 gi|169343587|ref|ZP_02864586.1| GTP-binding protein Era [Clostridium perfringens C str. JGS1495]
 gi|182624448|ref|ZP_02952232.1| GTP-binding protein Era [Clostridium perfringens D str. JGS1721]
 gi|122956577|sp|Q0SRG1|ERA_CLOPS RecName: Full=GTPase Era
 gi|110682548|gb|ABG85918.1| GTP-binding protein Era [Clostridium perfringens SM101]
 gi|169298147|gb|EDS80237.1| GTP-binding protein Era [Clostridium perfringens C str. JGS1495]
 gi|170663559|gb|EDT16242.1| GTP-binding protein Era [Clostridium perfringens E str. JGS1987]
 gi|170713142|gb|EDT25324.1| GTP-binding protein Era [Clostridium perfringens B str. ATCC 3626]
 gi|170715652|gb|EDT27834.1| GTP-binding protein Era [Clostridium perfringens CPE str. F4969]
 gi|177910451|gb|EDT72828.1| GTP-binding protein Era [Clostridium perfringens D str. JGS1721]
 gi|182382082|gb|EDT79561.1| GTP-binding protein Era [Clostridium perfringens NCTC 8239]
          Length = 296

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ I I+G  N GKS+L N L  + ++IV++ P TTR+ +   L  + Y +   DT
Sbjct: 1   MFKSGF-ITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNIQTILTGDDYQMIFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +      +++ DL+L L
Sbjct: 60  PGIHKPKHKLGEYMVNSATDSIKDVDLVLFL 90


>gi|319946393|ref|ZP_08020630.1| GTP-binding protein [Streptococcus australis ATCC 700641]
 gi|319747361|gb|EFV99617.1| GTP-binding protein [Streptococcus australis ATCC 700641]
          Length = 368

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 22/108 (20%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I LD   Y   I
Sbjct: 161 RKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPLDDGSY---I 217

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 218 YDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|317180432|dbj|BAJ58218.1| iron(II) transport protein [Helicobacter pylori F32]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL+   +  V +  G T D + + L  +   + I D  G    +
Sbjct: 8   VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 66

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 67  DFTTEEKVTKDFLEKGQYDLIL 88


>gi|317056494|ref|YP_004104961.1| GTP-binding protein Era [Ruminococcus albus 7]
 gi|315448763|gb|ADU22327.1| GTP-binding protein Era [Ruminococcus albus 7]
          Length = 298

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G +NAGKSSL NAL  + +A V+D P TTR  +T  L          DT G+ +  
Sbjct: 7   VTIAGRANAGKSSLLNALVGEKIAAVSDKPQTTRTKITGVLTKGETQFVFMDTPGMHKAK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
           + + +  +      +   D+I+ + +   K
Sbjct: 67  NKLSEHMVNTVNETITGVDMIIFMCDCTKK 96


>gi|291515778|emb|CBK64988.1| GTP-binding protein Era [Alistipes shahii WAL 8301]
          Length = 293

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G+ N GKS+L NAL  + ++I+T    TTR  +   +  E + +  SDT G
Sbjct: 3   RSGF-VNIIGNPNVGKSTLMNALVGEKLSIITSKAQTTRHRIMGIVSGEDFQIVYSDTPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           I +    +++  +K     + +AD+IL + +   + E S
Sbjct: 62  ILKPSYKLQESMMKFVTGALTDADVILYVTDTVEQSERS 100


>gi|257463636|ref|ZP_05628027.1| GTP-binding protein [Fusobacterium sp. D12]
 gi|317061187|ref|ZP_07925672.1| GTP-binding protein [Fusobacterium sp. D12]
 gi|313686863|gb|EFS23698.1| GTP-binding protein [Fusobacterium sp. D12]
          Length = 362

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 56/99 (56%), Gaps = 6/99 (6%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+  KN+   +    K+     NG ++++LG +N GKSS+ N L  ++   V+  PGTT 
Sbjct: 136 IVSCKNNYGMNGILRKIHHFYPNGVEVLVLGVTNVGKSSVVNRLLGENRVTVSKYPGTT- 194

Query: 256 DVLTIDLDLEGYLVKISDTAGI----RETDDIVEKEGIK 290
            +L+   ++ G  +++ DT G+    R +D ++E++ +K
Sbjct: 195 -LLSTFHEITGTKLRLIDTPGLIPGGRFSDLVIEEDQLK 232


>gi|227550575|ref|ZP_03980624.1| GTP-binding protein [Enterococcus faecium TX1330]
 gi|257888600|ref|ZP_05668253.1| GTP-binding protein YqeH [Enterococcus faecium 1,141,733]
 gi|257897022|ref|ZP_05676675.1| GTP-binding protein YqeH [Enterococcus faecium Com12]
 gi|257898963|ref|ZP_05678616.1| GTP-binding protein YqeH [Enterococcus faecium Com15]
 gi|293378715|ref|ZP_06624873.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium PC4.1]
 gi|227180283|gb|EEI61255.1| GTP-binding protein [Enterococcus faecium TX1330]
 gi|257824654|gb|EEV51586.1| GTP-binding protein YqeH [Enterococcus faecium 1,141,733]
 gi|257833587|gb|EEV60008.1| GTP-binding protein YqeH [Enterococcus faecium Com12]
 gi|257836875|gb|EEV61949.1| GTP-binding protein YqeH [Enterococcus faecium Com15]
 gi|292642643|gb|EFF60795.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium PC4.1]
          Length = 369

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R+G  + I+G +N GKS+L N + K     +DV   +  PGTT D + I LD   +L+  
Sbjct: 162 RDGRDVYIVGVTNVGKSTLINQIIKNTAGVQDVITTSQFPGTTLDKIEIPLDDGHFLI-- 219

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            DT GI     +         +L  ++  +I  LKEI  K
Sbjct: 220 -DTPGIIHRHQMAH-------YLGKKDLRIIAPLKEIKPK 251


>gi|254517950|ref|ZP_05130006.1| ferrous iron transporter B [Clostridium sp. 7_2_43FAA]
 gi|226911699|gb|EEH96900.1| ferrous iron transporter B [Clostridium sp. 7_2_43FAA]
          Length = 626

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 13/101 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           + ++G+ N GK+++FNAL       V + PG T D     I+ D+     K+ D  GI  
Sbjct: 4   VALVGNPNTGKTTVFNALTGSK-QYVGNWPGVTIDKKFGFINKDM-----KLVDLPGIYA 57

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320
            D    +E I R FLE E+ D+I     IN    I+  +N+
Sbjct: 58  MDTYSNEEKIARAFLEYEDVDVI-----INVVDSINLERNL 93


>gi|223044373|ref|ZP_03614407.1| ribosome biogenesis GTPase YqeH [Staphylococcus capitis SK14]
 gi|222442242|gb|EEE48353.1| ribosome biogenesis GTPase YqeH [Staphylococcus capitis SK14]
          Length = 366

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 21/150 (14%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RN   + ++G +N GKS+  N L      +KDV   +  PGTT D++ I LD   ++  
Sbjct: 157 VRNNEDVYVVGTTNVGKSTFINKLIEISVGEKDVVTTSRFPGTTLDMIDIPLDETTFMY- 215

Query: 271 ISDTAGI------------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
             DT GI            +E   I+ K+ IK+   ++ N +  L    +     +S  K
Sbjct: 216 --DTPGIIQEHQMTNYVSDKELKTIMPKKEIKQRVYQL-NEEQTLFFGGLARIDYVSGGK 272

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
                F     +++ T TE+ + L  +  G
Sbjct: 273 RSLVCFFSNDLNIHRTKTEKANELWKNQLG 302


>gi|330837425|ref|YP_004412066.1| GTP-binding protein Era-like-protein [Spirochaeta coccoides DSM
           17374]
 gi|329749328|gb|AEC02684.1| GTP-binding protein Era-like-protein [Spirochaeta coccoides DSM
           17374]
          Length = 294

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280
           + I+G  +AGKS+L N + +  V+I    P TTR+ +  I  D  G LV  +DT G   +
Sbjct: 6   VTIIGRPSAGKSTLVNTICEAKVSITARTPQTTRNAIKGIYTDSRGQLV-FTDTPGYHTS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           D    K         +E++D+IL +
Sbjct: 65  DKQFNKRLQDVALSALEDSDIILYV 89


>gi|308063524|gb|ADO05411.1| iron(II) transport protein [Helicobacter pylori Sat464]
          Length = 642

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL+   +  V +  G T D + + L  +   + I D  G    +
Sbjct: 6   VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQYDLIL 86


>gi|261838078|gb|ACX97844.1| iron(II) (ferous iron) transport protein [Helicobacter pylori 51]
          Length = 642

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL+   +  V +  G T D + + L  +   + I D  G    +
Sbjct: 6   VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQYDLIL 86


>gi|39935764|ref|NP_948040.1| GTP-binding protein Era [Rhodopseudomonas palustris CGA009]
 gi|39649617|emb|CAE28139.1| possible GTP-binding protein Era [Rhodopseudomonas palustris
           CGA009]
          Length = 308

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 32/191 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +   G  + + DT G
Sbjct: 14  RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIESGSQIILVDTPG 72

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKE--------ISFPK-----N 319
           I      +++  +K  +    +AD++ +L +    IN + E        +  PK      
Sbjct: 73  IFAPKRRLDRAMVKTAWSGAHDADIVCVLLDARAGINEQAEDILANLANVDRPKLLVLNK 132

Query: 320 IDFIFIGTKSDLYSTYTEE--YDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           ID I       L     +   +D   ++S+ TG+G+++L    +  L+ +    PF  P 
Sbjct: 133 IDLIAREKLLALAQAANQRLAFDQTFMVSALTGDGVDDL----RKALAAQVPPGPFHYPE 188

Query: 376 HK------RHL 380
            +      RHL
Sbjct: 189 DQMSDAPLRHL 199


>gi|331266921|ref|YP_004326551.1| GTP-binding protein [Streptococcus oralis Uo5]
 gi|326683593|emb|CBZ01211.1| GTP-binding protein [Streptococcus oralis Uo5]
          Length = 368

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     +DV   +  PGTT D + I LD   Y 
Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQDVITTSRFPGTTLDKIEIPLDDGAY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|322388976|ref|ZP_08062546.1| GTP-binding protein [Streptococcus parasanguinis ATCC 903]
 gi|321144281|gb|EFX39689.1| GTP-binding protein [Streptococcus parasanguinis ATCC 903]
          Length = 368

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 22/108 (20%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I LD   Y   I
Sbjct: 161 RKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPLDDGSY---I 217

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 218 YDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|319404019|emb|CBI77607.1| GTP-binding protein Era [Bartonella rochalimae ATCC BAA-1498]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 22/168 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++   +  +   + + DT G
Sbjct: 8   RSGF-VALIGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIYDKTQIILIDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----------------KKEISFPKN 319
           +      +E+  +   +   +NAD++L+L +  S                 + +I     
Sbjct: 67  VFRPHKRLERAMVSAAWGGAKNADILLVLIDAQSGFSDEVDAMLDILKSIEQDKILVLNK 126

Query: 320 IDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILS 363
           ID +   +   L +  +E  + L    IS+  G G ++L++ + +I+ 
Sbjct: 127 IDTVVKSSLLALTAKVSERVNFLQTFMISALNGSGCKDLLHYLSTIMQ 174


>gi|293392453|ref|ZP_06636774.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291425042|gb|EFE98250.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 291

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G +  GKSSL NAL + +V  V+D+   TRDVL + L    + + + D  G+ E++
Sbjct: 39  IGIMGKTGVGKSSLCNALFQGEVTPVSDVQACTRDVLRLRLSSGEHSLILVDLPGVGESE 98

Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305
               E E + R  L     DLIL +
Sbjct: 99  QRDKEYESLYRHIL--PELDLILWV 121


>gi|271498983|ref|YP_003332008.1| GTP-binding protein HSR1-like protein [Dickeya dadantii Ech586]
 gi|270342538|gb|ACZ75303.1| GTP-binding protein HSR1-related protein [Dickeya dadantii Ech586]
          Length = 288

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 8/109 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           ++   I  HI Q    E +     I I+G + AGKSSL NAL   +V+ V+D+   TR+ 
Sbjct: 20  WVTAQIWQHIRQLTHYEPV-----IGIMGKTGAGKSSLCNALFAGEVSPVSDVSACTREP 74

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
           L   L++    + + D  G+ E++   +E   + R   ++ + DL+L L
Sbjct: 75  LRFRLNVGERCMTLVDLPGVGESERRDIEYAAMYRQ--QLPHLDLVLWL 121


>gi|241894958|ref|ZP_04782254.1| GTP-binding protein [Weissella paramesenteroides ATCC 33313]
 gi|241871676|gb|EER75427.1| GTP-binding protein [Weissella paramesenteroides ATCC 33313]
          Length = 380

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 26/138 (18%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKK------DVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           R G  + ++G +N GKS+L N + K+      DV   +  PGTT D + I LD +  ++ 
Sbjct: 172 RKGRSVYVVGVTNVGKSTLINQIIKEVTGDRTDVITTSRFPGTTLDRIEIPLDDDSNII- 230

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
             DT GI   D +    G+K              LK ++ +KEI  PK      +  +  
Sbjct: 231 --DTPGIIHQDQMAHYLGVKD-------------LKYVSPQKEIK-PKTFQ---LNAEQT 271

Query: 331 LYSTYTEEYDHLISSFTG 348
           L+      +D++    TG
Sbjct: 272 LFMGALARFDYIQGDRTG 289


>gi|19703615|ref|NP_603177.1| GTP-binding protein Era [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|25008422|sp|Q8RGM1|ERA_FUSNN RecName: Full=GTPase Era
 gi|19713721|gb|AAL94476.1| GTP-binding protein era [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 296

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ +         +++ D+IL L
Sbjct: 66  HLLGEYMTNIAVKILKDVDIILFL 89


>gi|288817738|ref|YP_003432085.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
 gi|288787137|dbj|BAI68884.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
 gi|308751337|gb|ADO44820.1| GTP-binding proten HflX [Hydrogenobacter thermophilus TK-6]
          Length = 370

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 6/113 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAG-IR 278
           K+ ++G++N GKSSL   L  ++   V D+P  T D  T D+ L   + V I+DT G IR
Sbjct: 198 KVALVGYTNVGKSSLMRLLTGRE-TFVADMPFATLDTKTSDVYLSKDIKVLITDTVGFIR 256

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
           +   +++  E  K T  E++ AD++L + +I+ KK +   K +  +    K D
Sbjct: 257 DLPHELI--ESFKATLEELQEADILLHVVDISDKKWLEKIKVVRKVLAELKVD 307


>gi|326441004|ref|ZP_08215738.1| GTPase Era [Streptomyces clavuligerus ATCC 27064]
          Length = 314

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 12/145 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R+G+   + G  NAGKS+L NAL  + VAI ++ P TTR  V  I    E  L+ + DT 
Sbjct: 14  RSGFACFV-GRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEAQLI-LVDTP 71

Query: 276 GIRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEISFPKNIDFIFIG 326
           G+ +   ++ +   + ++ T+ EV+       AD  L   +    KE++  K    + I 
Sbjct: 72  GLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDRFIAKELAGIKKTPKVAIV 131

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGL 351
           TK+DL  + T     L  S  GE L
Sbjct: 132 TKTDLVDSRTLAEQLLAVSRLGEEL 156


>gi|187934969|ref|YP_001885107.1| GTP-binding protein Era [Clostridium botulinum B str. Eklund 17B]
 gi|226741198|sp|B2TMB9|ERA_CLOBB RecName: Full=GTPase Era
 gi|187723122|gb|ACD24343.1| GTP-binding protein Era [Clostridium botulinum B str. Eklund 17B]
          Length = 295

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ + I+G  N GKS+L N +  + ++IV++ P TTR+ +   L  E Y +   DT
Sbjct: 1   MFKSGF-VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGEDYQIVFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +        + DL+L L
Sbjct: 60  PGIHKPKHKLGEYMVNSAKDSTNDVDLVLFL 90


>gi|145295845|ref|YP_001138666.1| GTPase [Corynebacterium glutamicum R]
 gi|140845765|dbj|BAF54764.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 509

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 77/185 (41%), Gaps = 39/185 (21%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +I I G++NAGKSSL NA+    V    A+   +  TTR     D    G  V  +DT G
Sbjct: 283 QIAIAGYTNAGKSSLINAMTGAGVLVENALFATLDPTTRKAELAD----GRHVVFTDTVG 338

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL---------LLKEIN-----------SKKEISF 316
                     E  K T  EV  ADL+L          LK+I+           S   +  
Sbjct: 339 FVRHLPTSLVEAFKSTLEEVVEADLMLHVVDGSDPFPLKQIDAVNTVISDIVRSTGAVPP 398

Query: 317 PKNIDFIFIGTKSDLYSTYT-EEYDH------LISSFTGEGLEELINKIKSILSNKFKKL 369
           P+    I +  K D     T  E  H       +S+ TGEG++EL  +I+  L+++   L
Sbjct: 399 PE----IIVVNKIDQADPLTLAELRHAVDDVVFVSALTGEGIKELEARIELFLNSRDAHL 454

Query: 370 PFSIP 374
              IP
Sbjct: 455 LLKIP 459


>gi|50955206|ref|YP_062494.1| GTP-binding protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951688|gb|AAT89389.1| GTP-binding protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 489

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 35/180 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N + K  V    A+   +  T R  +T D    G L  ++DT G 
Sbjct: 273 VAIAGYTNAGKSSLLNRVTKAGVLVENALFATLDATVRRSVTAD----GRLYTLADTVGF 328

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFIFI 325
                    E  + T  EV ++D+I+ + + +     S              ++I  I +
Sbjct: 329 VRNLPHQLVEAFRSTLEEVADSDVIVHVVDGSHPDPASQLATVRDVIGDVGARDIPEIVV 388

Query: 326 GTKSDLYSTYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             K+DL      E + L+           S+ TGEG+EE++  I  +L +   ++   +P
Sbjct: 389 FNKADLIP----EDERLVLRGLEPGAIFASARTGEGVEEVLAAIARLLPDPSVEVELIVP 444


>gi|15606865|ref|NP_214245.1| hypothetical protein aq_1815 [Aquifex aeolicus VF5]
 gi|6226469|sp|O67679|ENGB_AQUAE RecName: Full=Probable GTP-binding protein EngB
 gi|2984110|gb|AAC07648.1| hypothetical protein aq_1815 [Aquifex aeolicus VF5]
          Length = 183

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 29/50 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +V +G SN GKSSL N +    VA V+  PG TR V    LD + YLV +
Sbjct: 21  VVFVGRSNVGKSSLLNMVVGSKVAKVSKTPGRTRAVNYFLLDKKLYLVDV 70


>gi|300781013|ref|ZP_07090867.1| GTP-binding protein HflX [Corynebacterium genitalium ATCC 33030]
 gi|300532720|gb|EFK53781.1| GTP-binding protein HflX [Corynebacterium genitalium ATCC 33030]
          Length = 505

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 73/184 (39%), Gaps = 33/184 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           KI I G++NAGKSSL NA+    V +V D    T D  T   +L +G  V ++DT G   
Sbjct: 279 KIAIAGYTNAGKSSLINAMTDAGV-LVEDALFATLDPSTRRAELADGRTVVLTDTVGFVR 337

Query: 280 TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKNI 320
                  E  K T  EV  ADL+L                   +L EI        P  I
Sbjct: 338 HLPTQLVEAFKSTLEEVVGADLMLHVVDGSDPFPLKQIKAVNDVLAEITRDTGEEIPPEI 397

Query: 321 DFIFIGTKSDLYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKFKKLP 370
             I +    +       E  H           +S+ TGEG++EL  +I+  L+     + 
Sbjct: 398 --IVVNKIDEADPVVLAELRHAFADSKHNVVFVSAVTGEGIDELEGRIEMFLNTLDAHVK 455

Query: 371 FSIP 374
             +P
Sbjct: 456 LLVP 459


>gi|332673534|gb|AEE70351.1| FeoB family ferrous iron (Fe2+) uptake protein [Helicobacter pylori
           83]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL+   +  V +  G T D + + L  +   + I D  G    +
Sbjct: 8   VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 66

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 67  DFTTEEKVTKDFLEKGQYDLIL 88


>gi|183508428|ref|ZP_02957974.1| GTP-binding protein Era [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|182675835|gb|EDT87740.1| GTP-binding protein Era [Ureaplasma parvum serovar 14 str. ATCC
           33697]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I+G  N GKS+L NA+ KK V+I+++ P TTR+ +    + +   +  +DT G  E
Sbjct: 8   VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGFHE 65


>gi|171920300|ref|ZP_02931650.1| GTP-binding protein Era [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|171902714|gb|EDT49003.1| GTP-binding protein Era [Ureaplasma parvum serovar 1 str. ATCC
           27813]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I+G  N GKS+L NA+ KK V+I+++ P TTR+ +    + +   +  +DT G  E
Sbjct: 8   VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGFHE 65


>gi|148994934|ref|ZP_01823936.1| GTP-binding protein [Streptococcus pneumoniae SP9-BS68]
 gi|147926936|gb|EDK77982.1| GTP-binding protein [Streptococcus pneumoniae SP9-BS68]
          Length = 368

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%)

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
           SG++S    QW+ K  H       D+  +  ++    + KEV++ I              
Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265
              E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD  
Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            Y   I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|5199325|gb|AAD40807.1|AF145049_8 ATP/GTP-binding protein [Streptomyces fradiae]
          Length = 425

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 24/174 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           + + G++NAGKSSL N L   DV +V D    T D     +   G +  ++DT G   R 
Sbjct: 202 VALAGYTNAGKSSLLNRLTGADV-LVKDALFATLDPTVRRVRAGGRVCTLTDTVGFVSRL 260

Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISFP---KNIDFIFIGT 327
              +V  +  + T  EV  ADL+L          L++I + + +        +  I +  
Sbjct: 261 PHHLV--DAFRSTLEEVTEADLVLHVVDSSHPDPLRQIETVRAVIGDIGGAGVPEILVAN 318

Query: 328 KSDLYST-------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K+D             E    ++S+ TG G++ L++++   LS    ++   +P
Sbjct: 319 KADAAPEGALERLLAAEPAAEVVSARTGAGVDRLLDRVAERLSGTGLQMELLLP 372


>gi|317177505|dbj|BAJ55294.1| iron(II) transport protein [Helicobacter pylori F16]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL+   +  V +  G T D + + L  +   + I D  G    +
Sbjct: 8   VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 66

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 67  DFTTEEKVTKDFLEKGQYDLIL 88


>gi|260495459|ref|ZP_05815585.1| GTP-binding protein Era [Fusobacterium sp. 3_1_33]
 gi|260196996|gb|EEW94517.1| GTP-binding protein Era [Fusobacterium sp. 3_1_33]
          Length = 298

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ +         +++ D+IL L
Sbjct: 66  HLLGEYMTNIAVSILKDVDIILFL 89


>gi|269796933|ref|YP_003316388.1| GTPase [Sanguibacter keddieii DSM 10542]
 gi|269099118|gb|ACZ23554.1| predicted GTPase [Sanguibacter keddieii DSM 10542]
          Length = 344

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 9/80 (11%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT------IDLDLEGYLVKISDTAG 276
           V+LG S AGKS+L NALA  +V    D+ G  R   T      + +   G LV   DT G
Sbjct: 183 VLLGPSGAGKSTLVNALAGTEVLATGDVRGDGRGKHTTTHRELVPVPGLGCLV---DTPG 239

Query: 277 IRETDDIVEKEGIKRTFLEV 296
           IR    + ++EG+++ F EV
Sbjct: 240 IRGVGLVADEEGLEQAFPEV 259


>gi|237745211|ref|ZP_04575692.1| GTP binding protein [Fusobacterium sp. 7_1]
 gi|229432440|gb|EEO42652.1| GTP binding protein [Fusobacterium sp. 7_1]
          Length = 298

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ +         +++ D+IL L
Sbjct: 66  HLLGEYMTNIAVKILKDVDIILFL 89


>gi|221057083|ref|XP_002259679.1| GTP-binding protein [Plasmodium knowlesi strain H]
 gi|193809751|emb|CAQ40453.1| GTP-binding protein, putative [Plasmodium knowlesi strain H]
          Length = 280

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 11/81 (13%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL-------DLEGY-LVKI 271
           +I I G SN GKSSL NAL   ++VA  +  PG TR +   +L       DL GY   K+
Sbjct: 77  QIAIFGRSNVGKSSLINALLNNREVAQASRTPGRTRHLFIFNLLNHLSIVDLPGYGFAKV 136

Query: 272 SDTAGIRETDDIVEKEGIKRT 292
           S    +R+   I+ +E +KR 
Sbjct: 137 SK--DMRDNWSILIEEYLKRA 155


>gi|163731746|ref|ZP_02139193.1| GTP-binding protein HflX, putative [Roseobacter litoralis Och 149]
 gi|161395200|gb|EDQ19522.1| GTP-binding protein HflX, putative [Roseobacter litoralis Och 149]
          Length = 432

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 29/178 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I ++G++NAGKS+LFN L   DV +  D+   T D     L L +G  V +SDT G    
Sbjct: 214 IALVGYTNAGKSTLFNHLTGADV-MAKDMLFATLDPTMRRLRLPDGPEVILSDTVGFISE 272

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------------IGT 327
                    + T  EV  AD+I  +++I+  +  +  K++  I              I  
Sbjct: 273 LPTELVAAFRATLEEVLAADVICHVRDISHPETDAQAKDVQDIMTTLGVEDDRPAFEIWN 332

Query: 328 KSDLYSTYTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL S   E+ D +            IS+ +GEGL+ L+  I   L  + ++   S+
Sbjct: 333 KLDLLS--EEDADAMRARADRDPAVFAISALSGEGLDGLLEAITQTLQGQKREATLSL 388


>gi|18310997|ref|NP_562931.1| GTP-binding protein Era [Clostridium perfringens str. 13]
 gi|21263575|sp|Q8XIU8|ERA_CLOPE RecName: Full=GTPase Era
 gi|18145679|dbj|BAB81721.1| GTP-binding protein [Clostridium perfringens str. 13]
          Length = 296

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ I I+G  N GKS+L N L  + ++IV++ P TTR+ +   L  + Y +   DT
Sbjct: 1   MFKSGF-ITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNIQTILTGDDYQMIFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +      +++ DL+L L
Sbjct: 60  PGIHKPKHKLGEYMVNSATDSIKDVDLVLFL 90


>gi|88802178|ref|ZP_01117706.1| putative GTP-binding protein [Polaribacter irgensii 23-P]
 gi|88782836|gb|EAR14013.1| putative GTP-binding protein [Polaribacter irgensii 23-P]
          Length = 294

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NAL  + ++I+T    TTR  +   ++ E Y +  SDT GI +    
Sbjct: 10  IIGNPNVGKSTLMNALVGEKLSIITAKAQTTRHRILGIVNEEDYQIVFSDTPGIIKPAYE 69

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311
           ++   +       E+AD+++ + E+  K
Sbjct: 70  LQSSMMDFVKSAFEDADILIYMVEVGEK 97


>gi|303241142|ref|ZP_07327650.1| ribosome biogenesis GTP-binding protein YlqF [Acetivibrio
           cellulolyticus CD2]
 gi|302591269|gb|EFL61009.1| ribosome biogenesis GTP-binding protein YlqF [Acetivibrio
           cellulolyticus CD2]
          Length = 321

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++N +   I + KL   I    K +I+G  N GKSSL N +A K  A+  D PG TR   
Sbjct: 131 MQNLMKDKIERDKLKGRISRPIKTMIVGIPNVGKSSLINKIAGKASAVTGDRPGVTRGKQ 190

Query: 259 TIDLDLEGYLVKISDTAGI 277
            I+++ +   +++ DT GI
Sbjct: 191 WINVNDQ---IQLLDTPGI 206


>gi|315586638|gb|ADU41019.1| FeoB family ferrous iron (Fe2+) uptake protein [Helicobacter pylori
           35A]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL+   +  V +  G T D + + L  +   + I D  G    +
Sbjct: 8   VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 66

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 67  DFTTEEKVTKDFLEKGQYDLIL 88


>gi|260777528|ref|ZP_05886422.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607194|gb|EEX33468.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 314

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 13/104 (12%)

Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           F +E +V+      S+ + +N IL L   ++ H  + ++G+ IR     +I+G  N GKS
Sbjct: 78  FEKEHNVKAMAITTSNTQEVNKILELCRKLAPH--REEIGKNIRT----MIMGIPNVGKS 131

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           ++ N LA + +A+  + P  TR    I+L   G +  +SDT GI
Sbjct: 132 TIINTLAGRTIAVTGNQPAVTRRQQRINLQ-NGIV--LSDTPGI 172


>gi|197122169|ref|YP_002134120.1| GTP-binding protein HSR1-related [Anaeromyxobacter sp. K]
 gi|196172018|gb|ACG72991.1| GTP-binding protein HSR1-related [Anaeromyxobacter sp. K]
          Length = 330

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 6/75 (8%)

Query: 209 QGKLGEIIRNGY-KIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLE 265
           + ++G+++R G  + V++G +N+GKSSL  AL  A+ ++A   + P TTRD L   ++ E
Sbjct: 69  RAEVGQVVREGAGQWVMIGPANSGKSSLLAALTHARPEIA---EYPFTTRDPLPGMMEFE 125

Query: 266 GYLVKISDTAGIRET 280
              V++ DT  + E 
Sbjct: 126 DVQVQLVDTPAVGEA 140


>gi|170762293|ref|YP_001752575.1| GTP-binding protein Era [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|186701592|ref|ZP_02553723.2| GTP-binding protein Era [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|13959363|sp|Q9PPZ9|ERA_UREPA RecName: Full=GTPase Era
 gi|189037684|sp|B1AJD1|ERA_UREP2 RecName: Full=GTPase Era
 gi|168827870|gb|ACA33132.1| GTP-binding protein Era [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|186700821|gb|EDU19103.1| GTP-binding protein Era [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I+G  N GKS+L NA+ KK V+I+++ P TTR+ +    + +   +  +DT G  E
Sbjct: 8   VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGFHE 65


>gi|313886114|ref|ZP_07819849.1| ribosome biogenesis GTPase Era [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332300531|ref|YP_004442452.1| GTP-binding protein Era-like-protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|312924460|gb|EFR35234.1| ribosome biogenesis GTPase Era [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332177594|gb|AEE13284.1| GTP-binding protein Era-like-protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 306

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 5/119 (4%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
            H++   L E  ++G+ + I+G+ N GKS+L N L  + ++I+T    TTR  +   ++ 
Sbjct: 5   QHLAGKSLPEGYKSGF-VSIVGNPNVGKSTLMNYLVGERISIITSKAQTTRHRILGIVNS 63

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +   V  SDT G+ +    +++     +   +E+ADL+L + +   +++    K+ DF+
Sbjct: 64  DHMQVVYSDTPGVLQPSYKLQERMRAYSEQALEDADLLLYVTDTMEERD----KHHDFV 118


>gi|302385324|ref|YP_003821146.1| GTP-binding protein Era [Clostridium saccharolyticum WM1]
 gi|302195952|gb|ADL03523.1| GTP-binding protein Era [Clostridium saccharolyticum WM1]
          Length = 301

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 11/99 (11%)

Query: 216 IRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKI 271
           + N YK   + ++G  N GKS+L N L  + +AI +D P TTR+ + T+  D  G ++ +
Sbjct: 1   MENNYKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFL 60

Query: 272 SDTAGIRETDDIVEKEGI---KRTFLEVENADLILLLKE 307
            DT GI +  + + +  +   +RT  EV   D++L L E
Sbjct: 61  -DTPGIHKAKNKLGEYMVSVAERTLKEV---DVVLWLVE 95


>gi|291571472|dbj|BAI93744.1| GTP-binding protein Era homolog [Arthrospira platensis NIES-39]
          Length = 310

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 29/181 (16%)

Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           GYK   + I+G  N GKS+L N L  + +AI + I  TTR+ L   L  +   +   DT 
Sbjct: 15  GYKSGFVGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTDSAQIIFVDTP 74

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFI 323
           GI +    + K  +K   L + + D+++ + +            ++       P  +   
Sbjct: 75  GIHKPHHQLGKVLVKNAKLAIASVDVLVFVVDSSVMSGGGDRYIVDLLTHTKVPVILGLN 134

Query: 324 FIGTKSDLYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               + D Y    + Y              S+ TG G+E L N    +L N     P+  
Sbjct: 135 KWDLQPDQYEAIDQSYQQFAEANQWQMVKFSAVTGAGVETLQN----LLINSLDPGPYYY 190

Query: 374 P 374
           P
Sbjct: 191 P 191


>gi|225859501|ref|YP_002741011.1| GTP-binding protein YqeH [Streptococcus pneumoniae 70585]
 gi|225722019|gb|ACO17873.1| GTP-binding protein [Streptococcus pneumoniae 70585]
          Length = 368

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%)

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
           SG++S    QW+ K  H       D+  +  ++    + KEV++ I              
Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265
              E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD  
Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            Y   I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|217033685|ref|ZP_03439112.1| hypothetical protein HP9810_5g27 [Helicobacter pylori 98-10]
 gi|216943874|gb|EEC23311.1| hypothetical protein HP9810_5g27 [Helicobacter pylori 98-10]
          Length = 642

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL+   +  V +  G T D + + L  +   + I D  G    +
Sbjct: 6   VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 65  DFTTEEKVTKDFLEKGQYDLIL 86


>gi|84516232|ref|ZP_01003592.1| GTP-binding protein HflX [Loktanella vestfoldensis SKA53]
 gi|84509928|gb|EAQ06385.1| GTP-binding protein HflX [Loktanella vestfoldensis SKA53]
          Length = 424

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 27/168 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN L   DV +  D+   T D     + L  G  V +SDT G    
Sbjct: 206 VALVGYTNAGKSTLFNMLTGADV-LAKDMLFATLDPTMRKITLPTGDEVIMSDTVGFISD 264

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------EISFPKNIDFIFIGT 327
                    + T  EV +ADLIL +++I+  +             ++   +N   I +  
Sbjct: 265 LPTELVAAFRATLEEVLDADLILHIRDISHDQTEEQACDVMAILHKLGVAENAPLIEVWN 324

Query: 328 KSDL-----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           K DL            +  TE+    +S+ TGEG+  L+  I   L +
Sbjct: 325 KVDLLQGEAFEGRVNQAARTEDL-FAVSALTGEGMAALLAAIPEKLKD 371


>gi|71027773|ref|XP_763530.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350483|gb|EAN31247.1| GTP-binding protein, putative [Theileria parva]
          Length = 521

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 222 IVILGHSNAGKSSLFNALAK--KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G  N GKSS+FN + K     ++V D PGTTRD      D  G   +I DT G
Sbjct: 65  VSIVGRPNVGKSSIFNRITKLFHYGSVVNDAPGTTRDRQYSIADWNGKYFRIIDTGG 121


>gi|330685473|gb|EGG97127.1| ribosome biogenesis GTPase YqeH [Staphylococcus epidermidis VCU121]
          Length = 366

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 15/100 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R+   + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD + ++   
Sbjct: 158 RDQEDVYIVGTTNVGKSTLINKLIELSVGEKDVVTTSRFPGTTLDMIDIPLDEKSFMF-- 215

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            DT GI ++  +         F+  +   LI+  KEI  +
Sbjct: 216 -DTPGIIQSHQMTH-------FVTEKELKLIMPKKEIKQR 247


>gi|225857361|ref|YP_002738872.1| GTP-binding protein YqeH [Streptococcus pneumoniae P1031]
 gi|225725831|gb|ACO21683.1| GTP-binding protein [Streptococcus pneumoniae P1031]
          Length = 368

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%)

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
           SG++S    QW+ K  H       D+  +  ++    + KEV++ I              
Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265
              E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD  
Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            Y   I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|325290526|ref|YP_004266707.1| GTP-binding protein Era-like-protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965927|gb|ADY56706.1| GTP-binding protein Era-like-protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 305

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L  + V I+++ P TTR+ +   L  E   +   DT G
Sbjct: 12  RSGF-VAVVGRPNAGKSTLLNTLVGQKVLIISEKPQTTRNRIQCILTEERGQIVFIDTPG 70

Query: 277 I 277
           I
Sbjct: 71  I 71


>gi|220916946|ref|YP_002492250.1| TGS domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954800|gb|ACL65184.1| TGS domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 330

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 6/72 (8%)

Query: 209 QGKLGEIIRNGY-KIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLE 265
           + ++G+++R G  + V++G +N+GKSSL  AL  AK ++A   + P TTRD L   ++ E
Sbjct: 69  RAEVGQVVREGAGQWVMIGPANSGKSSLLAALTHAKPEIA---EYPFTTRDPLPGMMEFE 125

Query: 266 GYLVKISDTAGI 277
              V++ DT  +
Sbjct: 126 DVQVQLVDTPAV 137


>gi|148984192|ref|ZP_01817487.1| GTP-binding protein [Streptococcus pneumoniae SP3-BS71]
 gi|149006583|ref|ZP_01830282.1| GTP-binding protein [Streptococcus pneumoniae SP18-BS74]
 gi|169833423|ref|YP_001695124.1| GTP-binding protein YqeH [Streptococcus pneumoniae Hungary19A-6]
 gi|182684693|ref|YP_001836440.1| GTP-binding protein [Streptococcus pneumoniae CGSP14]
 gi|237649161|ref|ZP_04523413.1| GTP-binding protein YqeH [Streptococcus pneumoniae CCRI 1974]
 gi|237820723|ref|ZP_04596568.1| GTP-binding protein YqeH [Streptococcus pneumoniae CCRI 1974M2]
 gi|147761881|gb|EDK68844.1| GTP-binding protein [Streptococcus pneumoniae SP18-BS74]
 gi|147923481|gb|EDK74594.1| GTP-binding protein [Streptococcus pneumoniae SP3-BS71]
 gi|168995925|gb|ACA36537.1| GTP-binding protein [Streptococcus pneumoniae Hungary19A-6]
 gi|182630027|gb|ACB90975.1| GTP-binding protein [Streptococcus pneumoniae CGSP14]
 gi|301800552|emb|CBW33192.1| GTP-binding protein [Streptococcus pneumoniae OXC141]
 gi|332072922|gb|EGI83403.1| GTPase family protein [Streptococcus pneumoniae GA17545]
          Length = 368

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%)

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
           SG++S    QW+ K  H       D+  +  ++    + KEV++ I              
Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265
              E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD  
Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            Y   I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|116733913|gb|ABK20015.1| hypothetical protein [synthetic construct]
          Length = 335

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 5/99 (5%)

Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +NG  +I ++G++NAGKS+ FN L   D +   D+   T D +T  + L  GY V +SDT
Sbjct: 168 KNGVLQIALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLSDT 226

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            G  +          + T  EV+ ADLIL L  I+S  E
Sbjct: 227 VGFIQDLPTTLIAAFRSTLEEVKEADLILHL--IDSSNE 263


>gi|160876996|ref|YP_001556312.1| GTP-binding proten HflX [Shewanella baltica OS195]
 gi|217974859|ref|YP_002359610.1| GTP-binding proten HflX [Shewanella baltica OS223]
 gi|304410916|ref|ZP_07392533.1| GTP-binding proten HflX [Shewanella baltica OS183]
 gi|307304913|ref|ZP_07584663.1| GTP-binding proten HflX [Shewanella baltica BA175]
 gi|160862518|gb|ABX51052.1| GTP-binding proten HflX [Shewanella baltica OS195]
 gi|217499994|gb|ACK48187.1| GTP-binding proten HflX [Shewanella baltica OS223]
 gi|304350813|gb|EFM15214.1| GTP-binding proten HflX [Shewanella baltica OS183]
 gi|306912315|gb|EFN42739.1| GTP-binding proten HflX [Shewanella baltica BA175]
 gi|315269199|gb|ADT96052.1| GTP-binding proten HflX [Shewanella baltica OS678]
          Length = 435

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 34/227 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFNAL   DV     +  T    L   LDL    V ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNALTSSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDF-----IFIGT 327
             D+V     K T  E   A+L+L + +        N  +  S  K+I+      + +  
Sbjct: 259 PHDLV--AAFKATLQETRQAELLLHIVDCADENMADNFDQVQSVLKDIEADEVMQLVVCN 316

Query: 328 KSDLYSTYTE--EYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           K DL    T   EY+ +       +S+    G + L+  I  ++    K+L   IP+   
Sbjct: 317 KIDLLEDVTPRIEYNDIGKPVRVWVSAQKRLGFDLLLKAITELIGEVIKELTLRIPATAG 376

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419
           H  +L Q  R   +      D G  I++  L      RLA  S G++
Sbjct: 377 H--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDADWRRLAKQSQGEL 421


>gi|332670393|ref|YP_004453401.1| ribosome-associated GTPase EngA [Cellulomonas fimi ATCC 484]
 gi|332339431|gb|AEE46014.1| ribosome-associated GTPase EngA [Cellulomonas fimi ATCC 484]
          Length = 491

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++   +  G    + DT G
Sbjct: 59  LAVVGRPNVGKSTLVNRILGRREAVVEDMPGVTRDRVSYPAEWAGRRFTLVDTGG 113



 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ ++G  N GKSSL N +   +  +V  + GTTRD +   + L+G      DTAGIR
Sbjct: 232 RVALVGRPNVGKSSLLNKVLGAERVVVDAVAGTTRDPVDELVLLKGEPWVFVDTAGIR 289


>gi|167749633|ref|ZP_02421760.1| hypothetical protein EUBSIR_00591 [Eubacterium siraeum DSM 15702]
 gi|167657386|gb|EDS01516.1| hypothetical protein EUBSIR_00591 [Eubacterium siraeum DSM 15702]
 gi|291530788|emb|CBK96373.1| GTP-binding protein Era [Eubacterium siraeum 70/3]
 gi|291557707|emb|CBL34824.1| GTP-binding protein Era [Eubacterium siraeum V10Sc8a]
          Length = 302

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 12/96 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK------ISDTA 275
           + I G  NAGKS+L N L  + +AIV+D P TTR        + G L K        DT 
Sbjct: 9   VAIAGRPNAGKSTLTNYLVGEKIAIVSDKPQTTR------TRINGVLTKGETQYVFIDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           G+ +  + +  + +K     V + D+IL++ +   K
Sbjct: 63  GMHKAKNKLSDQMLKSIRESVTDVDVILMMADATKK 98


>gi|219849958|ref|YP_002464391.1| GTP-binding proten HflX [Chloroflexus aggregans DSM 9485]
 gi|219544217|gb|ACL25955.1| GTP-binding proten HflX [Chloroflexus aggregans DSM 9485]
          Length = 461

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 35/192 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276
           I ++G++NAGKS+L NA+   DV     +   +  TTR VL     L G  V + +DT G
Sbjct: 238 IALVGYTNAGKSTLLNAMTGADVLAEDKLFATLDPTTRQVL-----LPGNTVALMTDTVG 292

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID------------FIF 324
             +          + T  E+E ADL+L + ++  +      + ++             + 
Sbjct: 293 FIQKLPPQLIAAFRATLEEIEEADLLLHVVDVTHRNAQEHAQTVEQTLRELKVDHKPILT 352

Query: 325 IGTKSDLYSTYTEE-YDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +  K DL    T E  D +            +S+  G GL+ L  +I + L+ +  ++  
Sbjct: 353 VLNKIDLLEGATAEGIDQIAAEMGLPGDIVAVSARRGWGLQTLGERIVATLAQRMVRVDA 412

Query: 372 SIPSHKRHLYHL 383
            IP  +  L  L
Sbjct: 413 LIPYQRNDLVAL 424


>gi|290474871|ref|YP_003467751.1| putative CP4-6 prophage; GTP-binding factor [Xenorhabdus bovienii
           SS-2004]
 gi|289174184|emb|CBJ80973.1| putative CP4-6 prophage; GTP-binding factor [Xenorhabdus bovienii
           SS-2004]
          Length = 291

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + AGKSSL NAL + +V  ++D+   TRDVL   L    + + + D  G+ E++
Sbjct: 39  IGIMGKTGAGKSSLCNALFQGEVTPISDVHACTRDVLRFRLRKGEHSLILIDLPGVGESE 98

Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305
               E E + R  L     DLIL +
Sbjct: 99  QRDKEYESLYRNIL--PELDLILWV 121


>gi|225861571|ref|YP_002743080.1| GTP-binding protein YqeH [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230643|ref|ZP_06964324.1| GTP-binding protein YqeH [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254887|ref|ZP_06978473.1| GTP-binding protein YqeH [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503494|ref|YP_003725434.1| GTP-binding protein [Streptococcus pneumoniae TCH8431/19A]
 gi|225726735|gb|ACO22586.1| GTP-binding protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|298239089|gb|ADI70220.1| GTP-binding protein [Streptococcus pneumoniae TCH8431/19A]
 gi|327389933|gb|EGE88278.1| GTPase family protein [Streptococcus pneumoniae GA04375]
 gi|332200311|gb|EGJ14384.1| GTPase family protein [Streptococcus pneumoniae GA47368]
          Length = 368

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%)

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
           SG++S    QW+ K  H       D+  +  ++    + KEV++ I              
Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265
              E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD  
Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            Y   I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|183601212|ref|ZP_02962705.1| hypothetical protein PROSTU_04846 [Providencia stuartii ATCC 25827]
 gi|188019561|gb|EDU57601.1| hypothetical protein PROSTU_04846 [Providencia stuartii ATCC 25827]
          Length = 290

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 37/71 (52%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +L ++I     I ++G + AGKSSL NAL +  ++ V+D+ G TR      + +  + +
Sbjct: 24  NQLSQLINYSPTIGLMGKTGAGKSSLINALFQSSLSPVSDVSGCTRQAQRFSMTMNNHTL 83

Query: 270 KISDTAGIRET 280
              D   + E+
Sbjct: 84  TFVDLPSVGES 94


>gi|94971366|ref|YP_593414.1| GTP-binding protein, HSR1-related [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553416|gb|ABF43340.1| GTP-binding protein, HSR1-related protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 451

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 37/181 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL------VKISDTA 275
           + ++G++NAGKS+LFNAL K  V        +++   T+D  L G +      V +SDT 
Sbjct: 235 VALVGYTNAGKSTLFNALTKAGVY------ASSKMFATLDPTLRGVMLPSKRQVLLSDTV 288

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLK---------------------EINSKKEI 314
           G             + T  EV+ A L+L +                      E+  K +I
Sbjct: 289 GFIRNLPTTLVSAFRATLEEVQRAALLLHVADATSPVALEQQRQVEDVLGELEVQDKPQI 348

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI-KSILSNKFKKLPFSI 373
                ID +    ++ L ++    +   +S+ +G G+E L++ I ++I  +  K     I
Sbjct: 349 HVMNKIDLLATSKRAALINSGKVVH---VSAKSGLGMEALLHAIDEAITEDPVKTARLKI 405

Query: 374 P 374
           P
Sbjct: 406 P 406


>gi|87199949|ref|YP_497206.1| small GTP-binding protein domain-containing protein
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135630|gb|ABD26372.1| Small GTP-binding protein domain [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 426

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 32/184 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280
           I ++G++NAGKS+LFN L   DV +  D+   T D     + L G    I SDT G    
Sbjct: 196 IALVGYTNAGKSTLFNRLTGADV-MAEDLLFATLDPTMRAIRLPGVEKAILSDTVGFISD 254

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEIS-----------FPKNIDFI 323
                    + T  EV  AD+I+ ++++      + K E+                I  +
Sbjct: 255 LPTQLVAAFRATLEEVTAADVIVHVRDVANLASADQKAEVEQILADLGVIGEAGSTIPIV 314

Query: 324 FIGTKSDLYSTYTEEYDH-------------LISSFTGEGLEELINKIKSILSNKFKKLP 370
               K DL +   +                  IS+ TG G+E L++K+  +L+   + L 
Sbjct: 315 EAWNKWDLLTPEEQAMRQDLIAAKIAEVPVVPISALTGAGVETLLDKLGEMLTGSAQTLE 374

Query: 371 FSIP 374
            ++P
Sbjct: 375 LTVP 378


>gi|293571008|ref|ZP_06682051.1| nitric-oxide synthase [Enterococcus faecium E980]
 gi|291608934|gb|EFF38213.1| nitric-oxide synthase [Enterococcus faecium E980]
          Length = 369

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R+G  + I+G +N GKS+L N + K     +DV   +  PGTT D + I LD   +L+  
Sbjct: 162 RDGRDVYIVGVTNVGKSTLINQIIKNTAGVQDVITTSQFPGTTLDKIEIPLDDGHFLI-- 219

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            DT GI     +         +L  ++  +I  LKEI  K
Sbjct: 220 -DTPGIIHRHQMAH-------YLGKKDLRIIAPLKEIKPK 251


>gi|289668455|ref|ZP_06489530.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 188

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            G+++   G SNAGKSS  NAL +++ +A V+  PG T+ ++   +  E YLV +
Sbjct: 5   GGFEVAFAGRSNAGKSSALNALTRQNSLARVSKTPGRTQQLVFFQIQPERYLVDL 59


>gi|229056697|ref|ZP_04196101.1| hypothetical protein bcere0026_8170 [Bacillus cereus AH603]
 gi|228720633|gb|EEL72194.1| hypothetical protein bcere0026_8170 [Bacillus cereus AH603]
          Length = 548

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 73/157 (46%), Gaps = 22/157 (14%)

Query: 219 GYKIVIL--GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           G K VI+  G   AGKSSLFNAL  +D      I  TT   +   ++L  Y+  + DT G
Sbjct: 31  GVKPVIINTGLLKAGKSSLFNALCDRDEFNSGVIRTTT---VNKKVELPDYV--LVDTPG 85

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN----SKKEISFPKNIDFIFIGTKSDLY 332
           +   +     E     F   +NAD+I+ +  I     S+ E      I  IF GT   L 
Sbjct: 86  LNANE-----EDTNEAFEGYKNADVIIFVHNIEDGELSRVECDAIHEISSIFQGTDGFLN 140

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           S+       L+ S   +  E  INKIKS++ N+ +K+
Sbjct: 141 SSI------LVLSHADQVEEATINKIKSVIQNQCEKI 171


>gi|193222286|emb|CAL61445.2| GTP-binding protein HflX [Herminiimonas arsenicoxydans]
          Length = 372

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 29/181 (16%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           K  I+   ++G+      N + + ++G++NAGKS+LFNALAK  + +  D    T D  +
Sbjct: 175 KQHITQRRARGR-----NNAFSVSLVGYTNAGKSTLFNALAKTKM-LAADQLFATLDTTS 228

Query: 260 IDLDL-EGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL------------LL 305
             + L E   V ISDT G IRE    +     + T  E  +ADL+L             +
Sbjct: 229 RRIYLGEAGNVVISDTVGFIRELPHQL-VAAFRATLEETIHADLLLHVVDGASPARMEQI 287

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLY----STYTEEYDHL----ISSFTGEGLEELINK 357
           +E+N+         I  I +  K D      +   +EYD +    IS+ TG GL+ L   
Sbjct: 288 EEVNAVLREIGADQIPQILVWNKIDAAGLEPALERDEYDKIRRVFISAQTGSGLDLLREA 347

Query: 358 I 358
           I
Sbjct: 348 I 348


>gi|15901581|ref|NP_346185.1| GTP-binding protein YqeH [Streptococcus pneumoniae TIGR4]
 gi|111657472|ref|ZP_01408219.1| hypothetical protein SpneT_02001323 [Streptococcus pneumoniae
           TIGR4]
 gi|149011381|ref|ZP_01832628.1| GTP-binding protein [Streptococcus pneumoniae SP19-BS75]
 gi|149020832|ref|ZP_01835361.1| GTP-binding protein [Streptococcus pneumoniae SP23-BS72]
 gi|168483288|ref|ZP_02708240.1| GTP-binding protein [Streptococcus pneumoniae CDC1873-00]
 gi|168488531|ref|ZP_02712730.1| GTP-binding protein [Streptococcus pneumoniae SP195]
 gi|168491368|ref|ZP_02715511.1| GTP-binding protein [Streptococcus pneumoniae CDC0288-04]
 gi|194396922|ref|YP_002038359.1| GTP-binding protein YqeH [Streptococcus pneumoniae G54]
 gi|303254361|ref|ZP_07340469.1| GTP-binding protein YqeH [Streptococcus pneumoniae BS455]
 gi|303258686|ref|ZP_07344666.1| GTP-binding protein [Streptococcus pneumoniae SP-BS293]
 gi|303261849|ref|ZP_07347795.1| GTP-binding protein [Streptococcus pneumoniae SP14-BS292]
 gi|303263712|ref|ZP_07349634.1| GTP-binding protein [Streptococcus pneumoniae BS397]
 gi|303266652|ref|ZP_07352536.1| GTP-binding protein [Streptococcus pneumoniae BS457]
 gi|303268542|ref|ZP_07354335.1| GTP-binding protein [Streptococcus pneumoniae BS458]
 gi|307127963|ref|YP_003879994.1| GTP-binding protein [Streptococcus pneumoniae 670-6B]
 gi|14973245|gb|AAK75825.1| GTP-binding protein [Streptococcus pneumoniae TIGR4]
 gi|147764371|gb|EDK71302.1| GTP-binding protein [Streptococcus pneumoniae SP19-BS75]
 gi|147930473|gb|EDK81456.1| GTP-binding protein [Streptococcus pneumoniae SP23-BS72]
 gi|172043326|gb|EDT51372.1| GTP-binding protein [Streptococcus pneumoniae CDC1873-00]
 gi|183572678|gb|EDT93206.1| GTP-binding protein [Streptococcus pneumoniae SP195]
 gi|183574264|gb|EDT94792.1| GTP-binding protein [Streptococcus pneumoniae CDC0288-04]
 gi|194356589|gb|ACF55037.1| GTP-binding protein [Streptococcus pneumoniae G54]
 gi|301802449|emb|CBW35205.1| GTP-binding protein [Streptococcus pneumoniae INV200]
 gi|302598712|gb|EFL65750.1| GTP-binding protein YqeH [Streptococcus pneumoniae BS455]
 gi|302636932|gb|EFL67421.1| GTP-binding protein [Streptococcus pneumoniae SP14-BS292]
 gi|302640187|gb|EFL70642.1| GTP-binding protein [Streptococcus pneumoniae SP-BS293]
 gi|302641937|gb|EFL72291.1| GTP-binding protein [Streptococcus pneumoniae BS458]
 gi|302643814|gb|EFL74077.1| GTP-binding protein [Streptococcus pneumoniae BS457]
 gi|302646750|gb|EFL76975.1| GTP-binding protein [Streptococcus pneumoniae BS397]
 gi|306485025|gb|ADM91894.1| GTP-binding protein [Streptococcus pneumoniae 670-6B]
 gi|332072581|gb|EGI83064.1| GTPase family protein [Streptococcus pneumoniae GA17570]
 gi|332074089|gb|EGI84567.1| GTPase family protein [Streptococcus pneumoniae GA41301]
          Length = 368

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%)

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
           SG++S    QW+ K  H       D+  +  ++    + KEV++ I              
Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265
              E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD  
Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            Y   I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|89100987|ref|ZP_01173831.1| GTP-binding protein protease modulator [Bacillus sp. NRRL B-14911]
 gi|89084283|gb|EAR63440.1| GTP-binding protein protease modulator [Bacillus sp. NRRL B-14911]
          Length = 237

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 24/186 (12%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
            ++I ++G++NAGKS+LFN LA+ + +   +    T D +T  L L  GYL   +DT G 
Sbjct: 17  AFQIALVGYTNAGKSTLFNRLAEAE-SFEENQLFATLDPMTRKLILPSGYLALATDTVGF 75

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL------------KEINSKKEISFPKNIDFIFI 325
            +          + T  EV  ADL+L +            K +N   E    ++I  + +
Sbjct: 76  IQDLPTTLVAAFRSTLEEVSEADLLLHVIDSSNPDYFQHEKTVNKLLEDLDIQHIPQLAV 135

Query: 326 GTKSD------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             KSD      + S  TE    +IS+F  +    L  KI+ ++    K     IPS +  
Sbjct: 136 YNKSDQVHPDFVPSAKTESV--VISAFADQDRSMLKRKIEELVLGMMKPYQVEIPSTEGR 193

Query: 380 LYHLSQ 385
           L  LSQ
Sbjct: 194 L--LSQ 197


>gi|313889406|ref|ZP_07823054.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313122238|gb|EFR45329.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 287

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTI 260
           +S  I++ +   I +   + +I+G  NAGKS+L N LA K VA+V + PG T+    L  
Sbjct: 105 MSDKITKLRQRGIQKETLRTMIIGIPNAGKSTLMNRLAGKKVAVVGNKPGVTKGQQWLKS 164

Query: 261 DLDLEGYLVKISDTAGI 277
           + DLE     I DT GI
Sbjct: 165 NKDLE-----ILDTPGI 176


>gi|301794722|emb|CBW37173.1| GTP-binding protein [Streptococcus pneumoniae INV104]
          Length = 368

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%)

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
           SG++S    QW+ K  H       D+  +  ++    + KEV++ I              
Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265
              E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD  
Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            Y   I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|289662601|ref|ZP_06484182.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 188

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            G+++   G SNAGKSS  NAL +++ +A V+  PG T+ ++   +  E YLV +
Sbjct: 5   GGFEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQIQPERYLVDL 59


>gi|237785685|ref|YP_002906390.1| putative GTP-binding protein [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758597|gb|ACR17847.1| putative GTP-binding protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 507

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 25/178 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           +I I G++NAGKSSL NA+    V +V D    T D  T   +L +G  V  SDT G   
Sbjct: 281 QIAIAGYTNAGKSSLINAITGAGV-LVEDALFATLDPTTRRAELADGRAVIFSDTVGFVR 339

Query: 280 TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKNI 320
                  E  + +  EV +ADL+L                   +L ++ + +  + P  I
Sbjct: 340 HLPTQLVEAFRSSLEEVASADLVLHVVDGSDPFPLKQIAAVHEVLADVRNSRAETMPPEI 399

Query: 321 DFIFIGTKSD--LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +    ++D  + +    E D +  +S+ TGE ++EL ++I+  L+     +   +P
Sbjct: 400 IVVNKIDQADPIVLAQLRHELDDVVFVSAKTGENIDELASRIELFLNTLDTHVRLHVP 457


>gi|223043263|ref|ZP_03613310.1| GTP-binding protein HflX [Staphylococcus capitis SK14]
 gi|222443474|gb|EEE49572.1| GTP-binding protein HflX [Staphylococcus capitis SK14]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD+   T  P T +  + I+   EG+ + ISDT
Sbjct: 205 FQVALVGYTNAGKSSWFNVLANEETYEKDLLFATLDPKTRK--IQIN---EGFNLIISDT 259

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E ++ADL+L
Sbjct: 260 VGFIQKLPTTLVAAFKSTLEEAKDADLLL 288


>gi|192291351|ref|YP_001991956.1| GTP-binding protein Era [Rhodopseudomonas palustris TIE-1]
 gi|192285100|gb|ACF01481.1| GTP-binding protein Era [Rhodopseudomonas palustris TIE-1]
          Length = 307

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 32/191 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +   G  + + DT G
Sbjct: 13  RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIESGSQIILVDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKE--------ISFPK-----N 319
           I      +++  +K  +    +AD++ +L +    IN + E        +  PK      
Sbjct: 72  IFAPKRRLDRAMVKTAWSGAHDADIVCVLLDARAGINEQAEDILANLANVDRPKLLVLNK 131

Query: 320 IDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           ID I     +            +   ++S+ TG+G+++L    +  L+ +    PF  P 
Sbjct: 132 IDLIAREKLLALAQAANQRLAFDQTFMVSALTGDGVDDL----RKALAAQVPPGPFHYPE 187

Query: 376 HK------RHL 380
            +      RHL
Sbjct: 188 DQMSDAPLRHL 198


>gi|150390776|ref|YP_001320825.1| GTP-binding protein Era [Alkaliphilus metalliredigens QYMF]
 gi|189037249|sp|A6TSJ8|ERA_ALKMQ RecName: Full=GTPase Era
 gi|149950638|gb|ABR49166.1| GTP-binding protein Era [Alkaliphilus metalliredigens QYMF]
          Length = 295

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + I+G  N GKS+L N +  + +AI++D P TTR+ +      E + +   DT G
Sbjct: 4   KSGF-VTIIGRPNVGKSTLMNQIIGEKIAIMSDKPQTTRNKIQSVYSQEDFQIVFLDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +    + +  +K     ++  D++L L
Sbjct: 63  IHKPKHKLGEYMVKVARDTLKEVDVVLFL 91


>gi|317181999|dbj|BAJ59783.1| iron(II) transport protein [Helicobacter pylori F57]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL NAL+   +  V +  G T D + + L  +   + I D  G    +
Sbjct: 8   VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 66

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D   +E + + FLE    DLIL
Sbjct: 67  DFTTEEKVTKDFLEKGQYDLIL 88


>gi|316934143|ref|YP_004109125.1| GTP-binding protein Era [Rhodopseudomonas palustris DX-1]
 gi|315601857|gb|ADU44392.1| GTP-binding protein Era [Rhodopseudomonas palustris DX-1]
          Length = 308

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 32/191 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +  +   + + DT G
Sbjct: 14  RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEDASQIILVDTPG 72

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKE--------ISFPK-----N 319
           I      +++  +K  +    +ADL+ +L +    IN + E        +  PK      
Sbjct: 73  IFAPKRRLDRAMVKTAWSGAHDADLVCVLLDARAGINEQAEDILANLANVDRPKLLVLNK 132

Query: 320 IDFIFIGTKSDLYSTYTEE--YDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           ID I       L     +   +D   ++S+ TG+G+++L    +  L+ +  + PF  P 
Sbjct: 133 IDLIAREKLLALAQAANQRLAFDQTFMVSALTGDGVDDL----RKALAAQVPEGPFHYPE 188

Query: 376 HK------RHL 380
            +      RHL
Sbjct: 189 DQMSDAPLRHL 199


>gi|293556693|ref|ZP_06675257.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium E1039]
 gi|291601155|gb|EFF31443.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium E1039]
          Length = 369

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R+G  + I+G +N GKS+L N + K     +DV   +  PGTT D + I LD   +L+  
Sbjct: 162 RDGRDVYIVGVTNVGKSTLINQIIKNTAGVQDVITTSQFPGTTLDKIEIPLDDGHFLI-- 219

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            DT GI     +         +L  ++  +I  LKEI  K
Sbjct: 220 -DTPGIIHRHQMAH-------YLGKKDLRIIAPLKEIKPK 251


>gi|237756325|ref|ZP_04584877.1| GTP-binding protein Era [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691511|gb|EEP60567.1| GTP-binding protein Era [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 307

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  N GKS+L N +    ++IV+  P TTR  +     L    +   DT G
Sbjct: 11  RAGF-VAIVGRPNVGKSTLLNNIIGTKLSIVSPRPQTTRMRILGVKHLPDAQIIFLDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           +++  D++ K  ++     +E+AD+IL++
Sbjct: 70  VQKGGDLLTKSVMESVVSGIESADVILMV 98


>gi|298490731|ref|YP_003720908.1| GTP-binding protein Era ['Nostoc azollae' 0708]
 gi|298232649|gb|ADI63785.1| GTP-binding protein Era ['Nostoc azollae' 0708]
          Length = 318

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ I I+G  N GKS+L N L  + +AI + I  TTR+ L   L  +   +   DT G
Sbjct: 25  KSGF-IGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGILTTDKAQLIFVDTPG 83

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +    + +  +K   + +E+ D++L +
Sbjct: 84  IHQPHHQLGEVLVKNAKIAIESVDVVLFV 112


>gi|185179024|ref|ZP_02964773.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024049|ref|ZP_02996802.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518321|ref|ZP_03003835.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|188524324|ref|ZP_03004361.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195867961|ref|ZP_03079958.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273309|ref|ZP_03205845.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209554232|ref|YP_002284938.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225550907|ref|ZP_03771856.1| GTP-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225551511|ref|ZP_03772457.1| GTP-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|226741403|sp|B5ZBZ8|ERA_UREU1 RecName: Full=GTPase Era
 gi|184209115|gb|EDU06158.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188019082|gb|EDU57122.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188998143|gb|EDU67240.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|195659806|gb|EDX53186.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195660357|gb|EDX53617.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249829|gb|EDY74609.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209541733|gb|ACI59962.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225379326|gb|EEH01691.1| GTP-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|225380061|gb|EEH02423.1| GTP-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I+G  N GKS+L NA+ +K V+I+++ P TTR+ +    + +   +  +DT G  E
Sbjct: 8   VAIVGKPNVGKSTLINAIMRKKVSIISNKPQTTRNAIKEIYEDDDSAIIFTDTPGFHE 65


>gi|13470637|ref|NP_102206.1| GTP binding protein-like [Mesorhizobium loti MAFF303099]
 gi|14021379|dbj|BAB47992.1| GTP binding protein-like [Mesorhizobium loti MAFF303099]
          Length = 431

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 29/180 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + I+G++NAGKS+LFN L   DV +  D+   T D     + L  G  + +SDT G    
Sbjct: 201 VAIVGYTNAGKSTLFNRLTGADV-LAQDMLFATLDPTLRRVRLPHGTPIILSDTVGFISD 259

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI------------------------NSKKEISF 316
                    + T  EV  ADL++ L++I                        ++K+ I  
Sbjct: 260 LPTHLIAAFRATLEEVVEADLVIHLRDISDPDTAAQAEDVERILADLGVDAGDTKRVIEV 319

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              +D +  G +S L +   +        IS+ TGEG+E L   I++ ++ + + L  +I
Sbjct: 320 WNKVDLLDEGNRSRLLADAVDGSKGPPIAISAVTGEGIEALKAVIETRMAGELEDLTVTI 379


>gi|308370797|ref|ZP_07422773.2| GTP-binding protein engA [Mycobacterium tuberculosis SUMu003]
 gi|308330810|gb|EFP19661.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu003]
          Length = 308

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G  N GKSSL N LA    ++V +  GTT D +   ++L G + +  DTAG+R 
Sbjct: 46  RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRR 104


>gi|293569277|ref|ZP_06680575.1| nitric-oxide synthase [Enterococcus faecium E1071]
 gi|291587983|gb|EFF19833.1| nitric-oxide synthase [Enterococcus faecium E1071]
          Length = 369

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R+G  + I+G +N GKS+L N + K     +DV   +  PGTT D + I LD   +L+  
Sbjct: 162 RDGRDVYIVGVTNVGKSTLINQIIKNTAGVQDVITTSQFPGTTLDKIEIPLDDGHFLI-- 219

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            DT GI     +         +L  ++  +I  LKEI  K
Sbjct: 220 -DTPGIIHRHQMAH-------YLGKKDLRIIAPLKEIKPK 251


>gi|288958024|ref|YP_003448365.1| GTP-binding protein [Azospirillum sp. B510]
 gi|288910332|dbj|BAI71821.1| GTP-binding protein [Azospirillum sp. B510]
          Length = 301

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 37/188 (19%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R G+ I ++G  NAGKS+L NA+    V+IV+    TTR  VL I +  +  ++ + DT 
Sbjct: 6   RCGF-IALVGAPNAGKSTLLNAMIGSKVSIVSPKVQTTRTRVLGITIQGDAQMIFV-DTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------------------SKKEISFP 317
           GI +    +++  +   +   E+AD+I +L +++                   ++ I   
Sbjct: 64  GIFKPKRRLDRAMVAAAWQGAEDADVIGVLYDVSRRSIDEDTRSIVARLKEQGREAILIL 123

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDH--------LISSFTGEGLEELINKIKSILSNKFKKL 369
             ID +    K D+     + +          ++S+FT +G+ +L    K  L+++  + 
Sbjct: 124 NKIDLV----KRDVLLGIADAFRQEGIFSDIFMVSAFTEDGVGDL----KQFLADRLPEG 175

Query: 370 PFSIPSHK 377
           P+  P  +
Sbjct: 176 PWHFPEDQ 183


>gi|167625539|ref|YP_001675833.1| GTP1/OBG protein [Shewanella halifaxensis HAW-EB4]
 gi|167355561|gb|ABZ78174.1| GTP1/OBG protein [Shewanella halifaxensis HAW-EB4]
          Length = 431

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFN L   DV     +  T    L   LDL    V ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNGLTTSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKNI 320
             D+V     K T  E   ADL+L                   +LKEI++   I  P+  
Sbjct: 259 PHDLV--AAFKATLQETRQADLLLHVVDSADEKMGDNFKQVQNVLKEIDA---IEIPQ-- 311

Query: 321 DFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
             + +  K DL        D+          +S+   +GLE +   I  ++     +L  
Sbjct: 312 --LIVCNKIDLLDEVKPRIDYDDEGTPIRVWVSAQQHKGLELVEEAINQLVGKAILELTL 369

Query: 372 SIPSHKRH 379
            IP+   H
Sbjct: 370 QIPASAGH 377


>gi|255101596|ref|ZP_05330573.1| GTP-binding protein Era [Clostridium difficile QCD-63q42]
          Length = 297

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D P TTR+ +      E   +   DT GI +  
Sbjct: 7   VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDEEMQIVFLDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + + +  +K      +N DLIL +
Sbjct: 67  NKLGEFMVKAATEAFKNVDLILFV 90


>gi|255593008|ref|XP_002535771.1| GTP-binding protein enga, putative [Ricinus communis]
 gi|223522018|gb|EEF26612.1| GTP-binding protein enga, putative [Ricinus communis]
          Length = 236

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305
           +PGTTRD + ID + +G    + DTAG+R    +   +EK  + +T   +E+A++++L+
Sbjct: 1   MPGTTRDSIHIDFERDGKQYTLVDTAGVRRRGKVFEAIEKFSVIKTLQAIEDANVVVLV 59


>gi|126700053|ref|YP_001088950.1| GTP-binding protein Era [Clostridium difficile 630]
 gi|254976030|ref|ZP_05272502.1| GTP-binding protein Era [Clostridium difficile QCD-66c26]
 gi|255093418|ref|ZP_05322896.1| GTP-binding protein Era [Clostridium difficile CIP 107932]
 gi|255307465|ref|ZP_05351636.1| GTP-binding protein Era [Clostridium difficile ATCC 43255]
 gi|255315163|ref|ZP_05356746.1| GTP-binding protein Era [Clostridium difficile QCD-76w55]
 gi|255517832|ref|ZP_05385508.1| GTP-binding protein Era [Clostridium difficile QCD-97b34]
 gi|255650948|ref|ZP_05397850.1| GTP-binding protein Era [Clostridium difficile QCD-37x79]
 gi|255656417|ref|ZP_05401826.1| GTP-binding protein Era [Clostridium difficile QCD-23m63]
 gi|260684017|ref|YP_003215302.1| GTP-binding protein [Clostridium difficile CD196]
 gi|260687677|ref|YP_003218811.1| GTP-binding protein [Clostridium difficile R20291]
 gi|296450136|ref|ZP_06891897.1| GTP-binding protein Era [Clostridium difficile NAP08]
 gi|296878517|ref|ZP_06902522.1| GTP-binding protein Era [Clostridium difficile NAP07]
 gi|306520828|ref|ZP_07407175.1| GTP-binding protein [Clostridium difficile QCD-32g58]
 gi|122973603|sp|Q182C3|ERA_CLOD6 RecName: Full=GTPase Era
 gi|115251490|emb|CAJ69323.1| GTP-binding protein Era [Clostridium difficile]
 gi|260210180|emb|CBA64374.1| GTP-binding protein [Clostridium difficile CD196]
 gi|260213694|emb|CBE05565.1| GTP-binding protein [Clostridium difficile R20291]
 gi|296260899|gb|EFH07733.1| GTP-binding protein Era [Clostridium difficile NAP08]
 gi|296430324|gb|EFH16166.1| GTP-binding protein Era [Clostridium difficile NAP07]
          Length = 297

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D P TTR+ +      E   +   DT GI +  
Sbjct: 7   VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDEEMQIVFLDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           + + +  +K      +N DLIL + + +SKK
Sbjct: 67  NKLGEFMVKAATEAFKNVDLILFVVD-DSKK 96


>gi|332201172|gb|EGJ15243.1| GTPase family protein [Streptococcus pneumoniae GA47901]
          Length = 368

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%)

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
           SG++S    QW+ K  H       D+  +  ++    + KEV++ I              
Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265
              E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD  
Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            Y   I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|68171944|ref|ZP_00545257.1| Small GTP-binding protein domain:GTP-binding protein Era [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|67998634|gb|EAM85374.1| Small GTP-binding protein domain:GTP-binding protein Era [Ehrlichia
           chaffeensis str. Sapulpa]
          Length = 296

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 21/162 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G +NAGKS+L N L  + VA VT    TTR  +   L+ E   +   DT GI      
Sbjct: 13  IVGTTNAGKSTLINMLVGQKVAAVTPKVQTTRVRMHAVLNNENVQLIFIDTPGIFSPKTK 72

Query: 284 VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSD----- 330
           +EK  +K  ++ ++  + ++LL ++ +      ++ IS  K  NI+ I +  K D     
Sbjct: 73  LEKFIVKHAWMSLKGIENVILLLDVKNYLNKHIERIISRIKQSNINAILVVNKIDTVPTS 132

Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                   +YS ++      IS+    GL  L++ +  I  N
Sbjct: 133 SVDKAIEHMYSLHSFSKTFTISALHDIGLSRLVDYLCEISPN 174


>gi|317502138|ref|ZP_07960316.1| GTP-binding protein Era [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331090350|ref|ZP_08339233.1| GTP-binding protein Era [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316896455|gb|EFV18548.1| GTP-binding protein Era [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330401305|gb|EGG80893.1| GTP-binding protein Era [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 298

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 28/171 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   +   DT GI +  
Sbjct: 10  VTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP-----KNIDFIF 324
           + + +  +      +   D++L L E            I   K++  P       ID + 
Sbjct: 70  NKLGEYMVNIAERSLNEVDVVLWLVEPSAFIGAGDRHIIEQLKKVKTPVVLVINKIDMVK 129

Query: 325 IGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                     Y +EYD      +S+ +G+  +ELI  I        K LP+
Sbjct: 130 KEEILTFIDAYRKEYDFAEIVPVSARSGDNTDELIKVI-------LKYLPY 173


>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040618|gb|ACT57414.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 311

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N      V+IVT    TTR ++   +  +   +   DT GI    
Sbjct: 25  VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D   K  I+ ++  +++AD++ L+  ++S +E+
Sbjct: 85  DSYHKLMIRLSWSTIKHADIVCLV--VDSHREL 115


>gi|322831157|ref|YP_004211184.1| GTP-binding proten HflX [Rahnella sp. Y9602]
 gi|321166358|gb|ADW72057.1| GTP-binding proten HflX [Rahnella sp. Y9602]
          Length = 434

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 39/202 (19%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD----IPGTTRDVL 258
           ++    QG+   +  +   + ++G++NAGKS+LFN + + DV +       +  T R ++
Sbjct: 181 VAKQREQGRRSRVRADIPTVSLVGYTNAGKSTLFNRITQADVYVANQLFATLDPTLRRII 240

Query: 259 TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
             D+   G  V ++DT G IR    D+V     K T  E   A L+L    +    +I  
Sbjct: 241 VADV---GETV-LADTVGFIRHLPHDLV--AAFKATLQETRQASLLL---HVIDAADIRV 291

Query: 317 PKNIDFI---------------FIGTKSDLYSTYTEEYDH---------LISSFTGEGLE 352
            +NID +                +  K D+   +    D           +S+ TGEG+ 
Sbjct: 292 QENIDAVNTVLAEIEADEIPALLVMNKIDMLDDFVPRIDRNEENLPVRVWLSAVTGEGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIP 374
            L   +   LS +  +    +P
Sbjct: 352 LLFQALTERLSGEIAQHELCLP 373


>gi|317051090|ref|YP_004112206.1| ribosome biogenesis GTP-binding protein YsxC [Desulfurispirillum
           indicum S5]
 gi|316946174|gb|ADU65650.1| ribosome biogenesis GTP-binding protein YsxC [Desulfurispirillum
           indicum S5]
          Length = 204

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +IV LG SN GKSSL NA+  ++++AI +  PG TR +   D++ + Y V +
Sbjct: 29  EIVFLGRSNVGKSSLINAVTGRRNIAITSKTPGRTRLINYFDVNGDLYCVDL 80


>gi|326203513|ref|ZP_08193377.1| GTP-binding protein Era [Clostridium papyrosolvens DSM 2782]
 gi|325986333|gb|EGD47165.1| GTP-binding protein Era [Clostridium papyrosolvens DSM 2782]
          Length = 298

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275
           ++G+ + ++G  N GKS+L N +  + +AI++D P TTR+ +  +  + E  L+ I DT 
Sbjct: 4   KSGF-VSVIGRPNVGKSTLLNTITGQKIAIMSDKPQTTRNTIRGVITNKECQLILI-DTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           GI +    + +  +      ++  DL+L L E N++
Sbjct: 62  GIHKPKTKLGEYMVNVASETIKEVDLVLFLVEANAQ 97


>gi|91204564|emb|CAJ70792.1| similar to ATP/GTP-binding protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 431

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 26/123 (21%)

Query: 206 HISQGKLGEIIRNGYKIV----------ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           H  + +LGEI +   ++V          I+G++NAGKS+L NAL        TD+     
Sbjct: 179 HDLKKRLGEIEKRQQRVVASRKEFSTVSIVGYTNAGKSTLMNAL--------TDVDAMVE 230

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDI--VEK------EGIKRTFLEVENADLILLLKE 307
           D L   LD +  + K+ ++  I  +D +  ++K         K T  E  NAD++L + +
Sbjct: 231 DKLFATLDTKTGICKLENSKNILISDTVGFIQKLPHYLVSSFKATLEETRNADILLHVAD 290

Query: 308 INS 310
           I+S
Sbjct: 291 ISS 293


>gi|18312175|ref|NP_558842.1| hypothetical protein PAE0782 [Pyrobaculum aerophilum str. IM2]
 gi|18159611|gb|AAL63024.1| conserved protein (possible hflX) [Pyrobaculum aerophilum str. IM2]
          Length = 386

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 12/121 (9%)

Query: 206 HISQGKLGEIIRNGYK----IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            I +G+   I++   K    +V+ G+++AGK++LFN+L  ++  +V   P  T +  +  
Sbjct: 168 EIKRGRAMHIMKRKEKGVPEVVLTGYTSAGKTTLFNSLVNEN-KLVDGRPFATLETYSRA 226

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL-------LKEINSKKEI 314
           LDL G  + ++DT G  +    +  E    T  E+ +AD ILL       L+EI  K E 
Sbjct: 227 LDLWGKRIVLTDTIGFIDDLPPLLIESFYSTLQEIIDADRILLVIDGSEPLEEITRKVET 286

Query: 315 S 315
           S
Sbjct: 287 S 287


>gi|332976612|gb|EGK13453.1| ribosome biogenesis GTP-binding protein YlqF [Desmospora sp. 8437]
          Length = 296

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +K  ++S   +G    I R+  + +++G  N GKS+L N LA +  A   D PG TR+ 
Sbjct: 103 LVKEKLASQTRKG----IRRHRIRAMVVGVPNVGKSALINRLAGRSTAKTGDRPGVTRNQ 158

Query: 258 LTIDLDLEGYLVKISDTAGI 277
             I L   G  +++ DT GI
Sbjct: 159 QWIKL---GNGMELLDTPGI 175


>gi|115390012|ref|XP_001212511.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114194907|gb|EAU36607.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 312

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 27/192 (14%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS----HISQGKLGEIIRNGYKI 222
            +R    ADL +  +  V +   + V  D  F  +  S       S+ +   +  +  ++
Sbjct: 37  QLRDLTPADLSYYWDTQVPD-EQRLVYADKFFSPSRHSPVKLWSASKFRTTPLSSSEPEV 95

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-------------IDLDLEGYLV 269
             LG SN GKSSL NA+  K++   +  PG TR++               + LD+ GY  
Sbjct: 96  AFLGRSNVGKSSLLNAVMGKEMCWTSSKPGRTREMNAFGIGGTKGGESKIVLLDMPGYGK 155

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVE--------NADLILLLKEINSKKEISFPKNID 321
                 G+     +  ++ ++R FL ++        +AD+++L ++     ++   K +D
Sbjct: 156 ASRTEWGVEIMKYLQGRKQLRRAFLLIDSLHGIKQSDADILMLFRKYAIPHQVILSK-VD 214

Query: 322 FIFIGTKSDLYS 333
            +    KS + S
Sbjct: 215 KVLAKKKSQVKS 226


>gi|257883040|ref|ZP_05662693.1| GTP-binding protein YqeH [Enterococcus faecium 1,231,502]
 gi|294621391|ref|ZP_06700563.1| nitric-oxide synthase [Enterococcus faecium U0317]
 gi|257818698|gb|EEV46026.1| GTP-binding protein YqeH [Enterococcus faecium 1,231,502]
 gi|291599038|gb|EFF30083.1| nitric-oxide synthase [Enterococcus faecium U0317]
          Length = 369

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R+G  + I+G +N GKS+L N + K     +DV   +  PGTT D + I LD   +L+  
Sbjct: 162 RDGRDVYIVGVTNVGKSTLINQIIKNTAGVQDVITTSQFPGTTLDKIEIPLDDGHFLI-- 219

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            DT GI     +         +L  ++  +I  LKEI  K
Sbjct: 220 -DTPGIIHRHQMAH-------YLGKKDLRIIAPLKEIKPK 251


>gi|256026685|ref|ZP_05440519.1| GTP-binding protein Era [Fusobacterium sp. D11]
 gi|289764681|ref|ZP_06524059.1| GTP binding protein [Fusobacterium sp. D11]
 gi|289716236|gb|EFD80248.1| GTP binding protein [Fusobacterium sp. D11]
          Length = 298

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ +         +++ D+IL L
Sbjct: 66  HLLGEYMTNIAVNILKDVDIILFL 89


>gi|69245736|ref|ZP_00603602.1| GTP-binding protein, HSR1-related [Enterococcus faecium DO]
 gi|257880239|ref|ZP_05659892.1| GTP-binding protein YqeH [Enterococcus faecium 1,230,933]
 gi|257885285|ref|ZP_05664938.1| GTP-binding protein YqeH [Enterococcus faecium 1,231,501]
 gi|257891377|ref|ZP_05671030.1| GTP-binding protein YqeH [Enterococcus faecium 1,231,410]
 gi|257893626|ref|ZP_05673279.1| GTP-binding protein YqeH [Enterococcus faecium 1,231,408]
 gi|258614428|ref|ZP_05712198.1| GTP-binding protein YqeH [Enterococcus faecium DO]
 gi|260560463|ref|ZP_05832637.1| GTP-binding protein YqeH [Enterococcus faecium C68]
 gi|261208980|ref|ZP_05923385.1| GTP-binding protein YqeH [Enterococcus faecium TC 6]
 gi|289565208|ref|ZP_06445660.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium D344SRF]
 gi|293563281|ref|ZP_06677731.1| nitric-oxide synthase [Enterococcus faecium E1162]
 gi|294619096|ref|ZP_06698591.1| nitric-oxide synthase [Enterococcus faecium E1679]
 gi|314939219|ref|ZP_07846473.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133a04]
 gi|314942037|ref|ZP_07848895.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133C]
 gi|314948390|ref|ZP_07851779.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0082]
 gi|314951244|ref|ZP_07854299.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133A]
 gi|314991667|ref|ZP_07857137.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133B]
 gi|314996793|ref|ZP_07861806.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133a01]
 gi|68195629|gb|EAN10069.1| GTP-binding protein, HSR1-related [Enterococcus faecium DO]
 gi|257814467|gb|EEV43225.1| GTP-binding protein YqeH [Enterococcus faecium 1,230,933]
 gi|257821137|gb|EEV48271.1| GTP-binding protein YqeH [Enterococcus faecium 1,231,501]
 gi|257827737|gb|EEV54363.1| GTP-binding protein YqeH [Enterococcus faecium 1,231,410]
 gi|257830005|gb|EEV56612.1| GTP-binding protein YqeH [Enterococcus faecium 1,231,408]
 gi|260073465|gb|EEW61793.1| GTP-binding protein YqeH [Enterococcus faecium C68]
 gi|260077019|gb|EEW64741.1| GTP-binding protein YqeH [Enterococcus faecium TC 6]
 gi|289163029|gb|EFD10877.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium D344SRF]
 gi|291594757|gb|EFF26139.1| nitric-oxide synthase [Enterococcus faecium E1679]
 gi|291604733|gb|EFF34217.1| nitric-oxide synthase [Enterococcus faecium E1162]
 gi|313589088|gb|EFR67933.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133a01]
 gi|313593758|gb|EFR72603.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133B]
 gi|313596596|gb|EFR75441.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133A]
 gi|313599163|gb|EFR78008.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133C]
 gi|313641470|gb|EFS06050.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133a04]
 gi|313645182|gb|EFS09762.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0082]
          Length = 369

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R+G  + I+G +N GKS+L N + K     +DV   +  PGTT D + I LD   +L+  
Sbjct: 162 RDGRDVYIVGVTNVGKSTLINQIIKNTAGVQDVITTSQFPGTTLDKIEIPLDDGHFLI-- 219

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            DT GI     +         +L  ++  +I  LKEI  K
Sbjct: 220 -DTPGIIHRHQMAH-------YLGKKDLRIIAPLKEIKPK 251


>gi|293374269|ref|ZP_06620597.1| ribosome biogenesis GTPase YqeH [Turicibacter sanguinis PC909]
 gi|325844831|ref|ZP_08168283.1| ribosome biogenesis GTPase YqeH [Turicibacter sp. HGF1]
 gi|292647102|gb|EFF65084.1| ribosome biogenesis GTPase YqeH [Turicibacter sanguinis PC909]
 gi|325489018|gb|EGC91406.1| ribosome biogenesis GTPase YqeH [Turicibacter sp. HGF1]
          Length = 369

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 22/107 (20%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK------DVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R G  + I+G +N GKS+L N + K+      D+   +  PGTT D++ I LD    
Sbjct: 157 EKYRKGRDVYIVGCTNVGKSTLVNRIIKRFTEEREDIITTSHFPGTTLDIIEIPLD---- 212

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
                D + I +T  I+ +  +              +LKEI  KKEI
Sbjct: 213 -----DCSAIVDTPGIINEHQLAHYVTPK-------VLKEITPKKEI 247


>gi|297735123|emb|CBI17485.3| unnamed protein product [Vitis vinifera]
          Length = 320

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 15/113 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + +LG  N GKS+L N +  + ++IVTD P TTR  +        Y + + DT G
Sbjct: 21  RSGY-VAVLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHRILGICSGPEYQMILYDTPG 79

Query: 277 IRET-----DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
           + E      D ++ K     T     NAD +++L  +++ KE   P+ ID + 
Sbjct: 80  VIEKKMHKLDSMMMKNVRSATI----NADCVVVL--VDACKE---PQKIDEVL 123


>gi|225570970|ref|ZP_03779993.1| hypothetical protein CLOHYLEM_07074 [Clostridium hylemonae DSM
           15053]
 gi|225160432|gb|EEG73051.1| hypothetical protein CLOHYLEM_07074 [Clostridium hylemonae DSM
           15053]
          Length = 311

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 10/108 (9%)

Query: 206 HISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           H+   K GE ++  +K   + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L
Sbjct: 5   HVPDEK-GERMKKDFKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVL 63

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGI---KRTFLEVENADLILLLKE 307
            L+   +   DT GI +  + + +  +   +RT  EV   D++L L E
Sbjct: 64  TLQDGQIVFVDTPGIHKAKNKLGEYMVNIAERTLNEV---DVVLWLVE 108


>gi|134094497|ref|YP_001099572.1| GTPase [Herminiimonas arsenicoxydans]
          Length = 338

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 29/181 (16%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           K  I+   ++G+      N + + ++G++NAGKS+LFNALAK  + +  D    T D  +
Sbjct: 141 KQHITQRRARGR-----NNAFSVSLVGYTNAGKSTLFNALAKTKM-LAADQLFATLDTTS 194

Query: 260 IDLDL-EGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL------------LL 305
             + L E   V ISDT G IRE    +     + T  E  +ADL+L             +
Sbjct: 195 RRIYLGEAGNVVISDTVGFIRELPHQL-VAAFRATLEETIHADLLLHVVDGASPARMEQI 253

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLY----STYTEEYDHL----ISSFTGEGLEELINK 357
           +E+N+         I  I +  K D      +   +EYD +    IS+ TG GL+ L   
Sbjct: 254 EEVNAVLREIGADQIPQILVWNKIDAAGLEPALERDEYDKIRRVFISAQTGSGLDLLREA 313

Query: 358 I 358
           I
Sbjct: 314 I 314


>gi|323703320|ref|ZP_08114970.1| GTP-binding protein Era [Desulfotomaculum nigrificans DSM 574]
 gi|323531683|gb|EGB21572.1| GTP-binding protein Era [Desulfotomaculum nigrificans DSM 574]
          Length = 302

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L  + VAI++D P TTR  +   L      +   DT G
Sbjct: 9   RSGF-VALVGRPNVGKSTLLNKLVGQKVAIMSDKPQTTRHKIHSVLSRNDAQIVFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFP-----KN 319
           I +    + +  +      ++  D++L L E                KEI  P       
Sbjct: 68  IHKPRHKLGEYMVDVALGALKEVDVVLFLVEATGPPGAGDRYIAEQLKEIKTPVFLLINK 127

Query: 320 IDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +D +      +   +Y +  D      +S+  GE ++ L++ I   L    +  P  + +
Sbjct: 128 VDLVKKEEVLERIVSYKDLLDFAEVVPVSALAGENVDRLVDTIVQYLPEGPQYYPADMVT 187

Query: 376 HKRHLYHLSQTVR 388
            +   + +++ +R
Sbjct: 188 DRPERFIMAEIIR 200


>gi|322419360|ref|YP_004198583.1| small GTP-binding protein [Geobacter sp. M18]
 gi|320125747|gb|ADW13307.1| small GTP-binding protein [Geobacter sp. M18]
          Length = 408

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 6/64 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279
           I + G  N GKSSL NAL ++ ++IV+D+ GTT D +   ++L   G ++ I DTAGI  
Sbjct: 12  IGLFGRRNVGKSSLLNALTRQTISIVSDVAGTTTDPVEKPMELLPIGPVLFI-DTAGI-- 68

Query: 280 TDDI 283
            DD+
Sbjct: 69  -DDV 71


>gi|207110172|ref|ZP_03244334.1| GTP-binding protein EngA [Helicobacter pylori HPKX_438_CA4C1]
          Length = 126

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR
Sbjct: 56  QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 113


>gi|166363299|ref|YP_001655572.1| GTP-binding protein [Microcystis aeruginosa NIES-843]
 gi|166085672|dbj|BAG00380.1| GTP-binding protein [Microcystis aeruginosa NIES-843]
          Length = 522

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 13/127 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDT 274
           R   KI++ G  +AGK+SL NAL  + V  V    GTT    T  L ++G    ++I+DT
Sbjct: 131 RKEVKIIVFGTGSAGKTSLINALIGQMVGNVEATMGTTEKGETYSLKMKGVNREIQITDT 190

Query: 275 AGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS---- 329
            GI E      ++E + R       ADL+L + + N  ++  +   +  I IG +S    
Sbjct: 191 PGILEIGAAGGQREQLARQL--ATEADLLLFVID-NDIRQSEYGPLLRLIDIGKRSLLVF 247

Query: 330 ---DLYS 333
              DLYS
Sbjct: 248 NKIDLYS 254


>gi|307709298|ref|ZP_07645756.1| conserved hypothetical protein [Streptococcus mitis SK564]
 gi|307619881|gb|EFN98999.1| conserved hypothetical protein [Streptococcus mitis SK564]
          Length = 283

 Score = 43.1 bits (100), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 11/82 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-- 255
            + N I+    +G   E +R     +I+G  NAGKS+L N LA K +A+V + PG T+  
Sbjct: 104 LMANKIARQKERGIKIETLRT----MIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQ 159

Query: 256 DVLTIDLDLEGYLVKISDTAGI 277
             L  + DLE     I DT GI
Sbjct: 160 QWLKTNKDLE-----ILDTPGI 176


>gi|297181617|gb|ADI17801.1| GTPase [uncultured Sphingobacteriales bacterium HF0130_33B19]
          Length = 292

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + GY + I+G+ N GKS+L NAL    ++I+T    TTR  +   L+ + + +  SDT G
Sbjct: 4   KAGY-VNIIGNPNVGKSTLMNALIGHKLSIITPKAQTTRHRILGILNEKDFQIVFSDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           + +    +++  +   +  + +AD+++ + EI  K
Sbjct: 63  VIDPSYKLQENMMNFVYSALHDADVLIYMIEIGEK 97


>gi|218883384|ref|YP_002427766.1| Ferrous iron transport protein B [Desulfurococcus kamchatkensis
           1221n]
 gi|218765000|gb|ACL10399.1| Ferrous iron transport protein B [Desulfurococcus kamchatkensis
           1221n]
          Length = 698

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+V +G  N GKSSLFN + K  V  V + PG T  V   ++    Y + + D  GI   
Sbjct: 10  KVVFIGQPNVGKSSLFNLVTKSHVE-VGNWPGKTVVVHKGEITYGSYQLILYDLPGIYGF 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
             + ++E + R  +  E  D+I+++ +
Sbjct: 69  STLTQEEIVAREAILAEKPDVIIVVAD 95


>gi|210621260|ref|ZP_03292566.1| hypothetical protein CLOHIR_00509 [Clostridium hiranonis DSM 13275]
 gi|210154871|gb|EEA85877.1| hypothetical protein CLOHIR_00509 [Clostridium hiranonis DSM 13275]
          Length = 412

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  N GKSSL NA+  +++++V+D  GTT D +   ++L G   V   DTAG  + 
Sbjct: 15  IGIYGRRNNGKSSLINAITGQNISLVSDFAGTTTDPVYKSMELHGIGPVVFIDTAGFDDE 74

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            ++ +   ++RT   V   D+ +++
Sbjct: 75  GELGQMR-VERTLDAVNKTDIAIVV 98


>gi|325068464|ref|ZP_08127137.1| GTP-binding proten HflX [Actinomyces oris K20]
          Length = 273

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 20/173 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G++NAGKSSL N L +  + +   +  T    +      EG    ++DT G     
Sbjct: 65  VAIAGYTNAGKSSLMNRLTEAGIMVEDALFATLDPTVRRAETSEGRTYTLTDTVGFVRNL 124

Query: 282 DIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEI--SFPKNIDF--IFIGTK 328
                E  + T  EV  ADL+L          L ++ + + +    P  +D   + +  K
Sbjct: 125 PHELIEAFRSTLEEVAGADLVLHVVDAAHPDPLSQVAAVRTVLSEIPGALDVPELIVLNK 184

Query: 329 SDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +DL    T             +S+ TGEG+EEL  +I+ +L +    +   +P
Sbjct: 185 TDLADAVTLAALRTGLPGAVAVSARTGEGIEELRARIEQMLPHPQVSIDVVVP 237


>gi|254451323|ref|ZP_05064760.1| GTP-binding proten HflX [Octadecabacter antarcticus 238]
 gi|198265729|gb|EDY89999.1| GTP-binding proten HflX [Octadecabacter antarcticus 238]
          Length = 449

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 26/179 (14%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y IV L G++NAGKS+LFN L+  DV    D+   T D     ++L  G  V +SDT G 
Sbjct: 202 YPIVALVGYTNAGKSTLFNRLSGADV-FAHDMLFATLDPTMRKVELPNGDEVIMSDTVGF 260

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI-------------NSKKEISFPKNIDFIF 324
                       + T  EV  AD+IL +++I             ++ +++    ++  I 
Sbjct: 261 ISDLPTQLVASFRATLEEVLEADIILHVRDISHPQSAEQKKAVLDTLRQLDVNPDVPMIE 320

Query: 325 IGTKSDLYSTYTEEY--------DHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           +  K DL       Y        D +  IS+ TGEGL+ L+N +   L  + + L   +
Sbjct: 321 VLNKIDLLEPEDAGYLQALHKDNDKVFGISAVTGEGLDRLLNDVTDHLIVQTRTLTLDL 379


>gi|153815591|ref|ZP_01968259.1| hypothetical protein RUMTOR_01827 [Ruminococcus torques ATCC 27756]
 gi|145847022|gb|EDK23940.1| hypothetical protein RUMTOR_01827 [Ruminococcus torques ATCC 27756]
          Length = 298

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 29/181 (16%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   +  
Sbjct: 1   MREDFKSGF-VTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP-- 317
            DT GI +  + + +  +      +   D++L L E            I   K++  P  
Sbjct: 60  VDTPGIHKAKNKLGEYMVNIAERSLNEVDVVLWLVEPSAFIGAGDRHIIEQLKKVKTPVI 119

Query: 318 ---KNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLP 370
                ID +           Y +EYD      +S+ +G+  +ELI  I        K LP
Sbjct: 120 LVINKIDMVKKEEILTFIDAYRKEYDFAEIVPVSARSGDNTDELIKVI-------LKYLP 172

Query: 371 F 371
           +
Sbjct: 173 Y 173


>gi|126737691|ref|ZP_01753421.1| GTP-binding protein HflX [Roseobacter sp. SK209-2-6]
 gi|126721084|gb|EBA17788.1| GTP-binding protein HflX [Roseobacter sp. SK209-2-6]
          Length = 423

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 26/180 (14%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y IV L G++NAGKS+LFN L   +V +  D+   T D     ++L +G  + +SDT G 
Sbjct: 202 YPIVALVGYTNAGKSTLFNRLTGAEV-MAKDMLFATLDPTMRRVELPDGPEIILSDTVGF 260

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI----------------------NSKKEIS 315
                       + T  EV  AD+IL +++I                      +S+ +I 
Sbjct: 261 ISDLPTELVAAFRATLEEVLAADVILHVRDISHDETAKQAEDVASILESLGVDDSRAQIE 320

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               +D +              E D H IS+ TGEGL  L+  I + L     +  F++P
Sbjct: 321 IWNKLDQLSEEEAIARRERAEREEDVHAISALTGEGLPGLLQDIATKLQGVLFEEQFTLP 380


>gi|291542200|emb|CBL15310.1| GTP-binding protein Era [Ruminococcus bromii L2-63]
          Length = 305

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSS+ N L  + +AIV+  P TTR+ +T  L    Y +   DT G+ +  
Sbjct: 13  IAIVGRPNVGKSSILNRLMGQKIAIVSSKPQTTRNRITGVLTQGEYQLVFFDTPGMHKPK 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
             + K  ++     V   D  +L+ E
Sbjct: 73  TSLGKYMVRSVNESVGGVDCCMLVVE 98


>gi|288818281|ref|YP_003432629.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
 gi|288787681|dbj|BAI69428.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
 gi|308751878|gb|ADO45361.1| GTP-binding protein Era [Hydrogenobacter thermophilus TK-6]
          Length = 302

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGI 277
           GY + I+G  N GKS+L N +    V+IV+  PGTTR  +L +    +   +   DT GI
Sbjct: 4   GY-VAIVGKPNVGKSTLLNQIIGTKVSIVSPKPGTTRIRILGVKNIPDEAQIVFLDTPGI 62

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305
               D + +  ++     +++AD+IL +
Sbjct: 63  YRPKDALGEAMVQVASASLQDADIILFM 90


>gi|269862373|ref|XP_002650812.1| GTPase, predicted [Enterocytozoon bieneusi H348]
 gi|269863467|ref|XP_002651233.1| GTPase, predicted [Enterocytozoon bieneusi H348]
 gi|220064905|gb|EED42823.1| GTPase, predicted [Enterocytozoon bieneusi H348]
 gi|220065579|gb|EED43245.1| GTPase, predicted [Enterocytozoon bieneusi H348]
          Length = 270

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 8/135 (5%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N GKSSL N L  K V  V  IPG T+    I L  + YL+   D+ G+   +++ 
Sbjct: 121 VGYPNIGKSSLINILKNKQVCKVAPIPGETKVWQYITLMKDVYLI---DSPGVVPINNL- 176

Query: 285 EKEGIKRTFLEVEN-ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
            KE +    + VEN AD    + EI ++   +  K +  I      D +  + ++Y  L 
Sbjct: 177 -KEAVLHGAVRVENLADPDFYVAEIFNRAGFNEIKKLYCINFENIDDFFIEFAKKYKKLH 235

Query: 344 SSFTGEGLEELINKI 358
           +   G+    LI+KI
Sbjct: 236 AG--GQPNINLISKI 248


>gi|213402317|ref|XP_002171931.1| mitochondrial GTPase [Schizosaccharomyces japonicus yFS275]
 gi|211999978|gb|EEB05638.1| mitochondrial GTPase [Schizosaccharomyces japonicus yFS275]
          Length = 328

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 221 KIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           K+ ++G  N GKSS+ NAL      ++ VA+V   PG TR+V  +    EG  V + DT 
Sbjct: 135 KVFVVGMPNVGKSSVMNALRHASLHRRKVAVVGSHPGVTRNVGEVVRLFEGKNVYMVDTP 194

Query: 276 GI 277
           GI
Sbjct: 195 GI 196


>gi|306818072|ref|ZP_07451803.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35239]
 gi|304649036|gb|EFM46330.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35239]
          Length = 303

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 3/102 (2%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+ + +LG  N GKS+L N +  + +AI +  P TTR V    +   G+ + + D
Sbjct: 12  EDFRAGF-VAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVARGIVHRPGFQLVLVD 70

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           T GI     ++ +    R  +E   AD+ LL+  + + +EI 
Sbjct: 71  TPGIHRPRTLLGQRLNDR--VEEAQADVDLLVFCVPADQEIG 110


>gi|160902807|ref|YP_001568388.1| small GTP-binding protein [Petrotoga mobilis SJ95]
 gi|189037183|sp|A9BHV0|ENGB_PETMO RecName: Full=Probable GTP-binding protein EngB
 gi|160360451|gb|ABX32065.1| small GTP-binding protein [Petrotoga mobilis SJ95]
          Length = 196

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 32/172 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTID----LDLEGY-LVKISD 273
           I   G SN GKSS  NA+    +A V+  PG TR +   L  D    +DL GY    +S 
Sbjct: 26  IAFAGRSNVGKSSFLNAILGIKIAKVSSTPGKTRSINYYLVNDKYYFVDLPGYGFASVSK 85

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---ISFPKNI--DFIFIGTK 328
               +E  +++  E  K  F  +    L++  + +  K +   + + K++   F+FI TK
Sbjct: 86  QE--KERWNVLMNEYFKTRF-SLSAVSLLIDHRHMPQKLDYAMVEWLKDLGTPFLFILTK 142

Query: 329 SDL----------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           SD                 +STY E      SS T EGL+E++  I  IL +
Sbjct: 143 SDKLTKSEKAKLFEDIKRSFSTYGEYIYMPFSSKTKEGLKEVLKTIGEILGD 194


>gi|323497165|ref|ZP_08102185.1| GTPase YlqF [Vibrio sinaloensis DSM 21326]
 gi|323317740|gb|EGA70731.1| GTPase YlqF [Vibrio sinaloensis DSM 21326]
          Length = 311

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 13/104 (12%)

Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           F +E +V+      S+ + +N IL L   ++ H  + ++G+ IR     +I+G  N GKS
Sbjct: 75  FEKENNVKAMAITTSNVQEVNKILELCRKLAPH--REEIGKNIRT----MIMGIPNVGKS 128

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           ++ N LA + VA+  + P  TR    I+L   G +  +SDT GI
Sbjct: 129 TIINTLAGRSVAVTGNQPAVTRRQQRINLQ-NGIV--LSDTPGI 169


>gi|296129409|ref|YP_003636659.1| GTP-binding proten HflX [Cellulomonas flavigena DSM 20109]
 gi|296021224|gb|ADG74460.1| GTP-binding proten HflX [Cellulomonas flavigena DSM 20109]
          Length = 505

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 31/192 (16%)

Query: 209 QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLD 263
           Q K     RN    + I G++NAGKSSL N L    V    A+   +  T R     D  
Sbjct: 272 QTKRASRRRNAIPSVAIAGYTNAGKSSLLNRLTHAGVLVENALFATLDPTVRRAEAAD-- 329

Query: 264 LEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKE 313
             G +  ++DT G +R     +  E  + T  EV +ADLIL +          +I + + 
Sbjct: 330 --GRVYTLADTVGFVRHLPHQL-VEAFRSTLEEVADADLILHVVDAAHPDPEGQIAAVRH 386

Query: 314 I--SFPKNIDF--IFIGTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSIL 362
           +    P  +D   I +  K+DL +          E +  ++S+ TGEG++EL   I   L
Sbjct: 387 VFADIPGAMDVPEIIVLNKADLAAPEAVARLRSREVHSIVVSAHTGEGIDELSALIADQL 446

Query: 363 SNKFKKLPFSIP 374
                ++   +P
Sbjct: 447 PRPGVQVEVVVP 458


>gi|187251519|ref|YP_001876001.1| GTP-binding protein [Elusimicrobium minutum Pei191]
 gi|186971679|gb|ACC98664.1| GTP-binding conserved hypothetical protein [Elusimicrobium minutum
           Pei191]
          Length = 415

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 22/181 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           ++ I+G++NAGKS+L N L ++      D    T D  T  + +  G  +  +DT G  +
Sbjct: 197 QVAIVGYTNAGKSTLLNTLTQETAVYADDKLFATLDPTTRRVKMPGGGQILFTDTVGFIQ 256

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFIG 326
                     + T  EV  AD+IL +K+ +SK             K++   +NI    + 
Sbjct: 257 KLPHNLVSAFRATLEEVSEADVILHVKDASSKDISEQSRTVFKIIKDLG-AQNIPMAEVF 315

Query: 327 TKSDLYSTY-------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL   Y              IS+   +G++EL+ KI+  L  K+      IP  K +
Sbjct: 316 NKCDLLPHYPLAALKNANPGAVFISAKENKGIKELLKKIEETLLFKWHLKTIRIPVSKAY 375

Query: 380 L 380
           L
Sbjct: 376 L 376


>gi|91774320|ref|YP_567012.1| small GTP-binding protein [Methanococcoides burtonii DSM 6242]
 gi|91713335|gb|ABE53262.1| GTP-binding domain protein [Methanococcoides burtonii DSM 6242]
          Length = 413

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 28/196 (14%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRN--GYKIVIL-GHSNAGKSSLFNALAKKDVAI 246
           ++V   I+ ++N+I +    G+     R+  G+ +V L G++NAGKS+LF +L K+ V  
Sbjct: 158 QDVKKRIVRIRNEIHNSCKGGESLRSFRHERGFSLVALAGYTNAGKSTLFQSLVKEGVE- 216

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           V D+  TT    T  L ++   V ++DT G  E       +  + T  E+  AD+ILL+ 
Sbjct: 217 VEDMLFTTLSPTTRSLSIKQRRVLLTDTVGFIEDLPHWMVDAFRSTLDEIFLADVILLVV 276

Query: 307 EINSKKEISFPKNI-------------DFIFIGTKSDLYS-----------TYTEEYDHL 342
           +++   ++   K +             + + +  K+D+             +Y   +  L
Sbjct: 277 DMSDPLDVIRQKLVVSHDIFWKRTEGAEIVAVLNKADMVDPDDLERKVDAISYLAPHLVL 336

Query: 343 ISSFTGEGLEELINKI 358
           +S+ +G+G E L++ I
Sbjct: 337 VSASSGDGFEVLLDTI 352


>gi|15924587|ref|NP_372121.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927177|ref|NP_374710.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus N315]
 gi|148268080|ref|YP_001247023.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus JH9]
 gi|150394149|ref|YP_001316824.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus JH1]
 gi|156979915|ref|YP_001442174.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315366|ref|ZP_04838579.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006382|ref|ZP_05144983.2| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793673|ref|ZP_05642652.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9781]
 gi|258411028|ref|ZP_05681308.1| nitric oxide synthase [Staphylococcus aureus A9763]
 gi|258420169|ref|ZP_05683124.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9719]
 gi|258437428|ref|ZP_05689412.1| nitric-oxide synthase [Staphylococcus aureus A9299]
 gi|258443634|ref|ZP_05691973.1| GTP-binding protein YqeH [Staphylococcus aureus A8115]
 gi|258446842|ref|ZP_05694996.1| nitric-oxide synthase [Staphylococcus aureus A6300]
 gi|258448756|ref|ZP_05696868.1| nitric-oxide synthase [Staphylococcus aureus A6224]
 gi|258453573|ref|ZP_05701551.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A5937]
 gi|269203224|ref|YP_003282493.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus ED98]
 gi|282893098|ref|ZP_06301332.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A8117]
 gi|282928230|ref|ZP_06335835.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A10102]
 gi|295406720|ref|ZP_06816525.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A8819]
 gi|296276599|ref|ZP_06859106.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus MR1]
 gi|297245698|ref|ZP_06929563.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A8796]
 gi|13701395|dbj|BAB42689.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247368|dbj|BAB57759.1| similar to GTPase family protein [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|147741149|gb|ABQ49447.1| Nitric-oxide synthase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946601|gb|ABR52537.1| Nitric-oxide synthase [Staphylococcus aureus subsp. aureus JH1]
 gi|156722050|dbj|BAF78467.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257787645|gb|EEV25985.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9781]
 gi|257840178|gb|EEV64642.1| nitric oxide synthase [Staphylococcus aureus A9763]
 gi|257843880|gb|EEV68274.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9719]
 gi|257848633|gb|EEV72621.1| nitric-oxide synthase [Staphylococcus aureus A9299]
 gi|257851040|gb|EEV74983.1| GTP-binding protein YqeH [Staphylococcus aureus A8115]
 gi|257854417|gb|EEV77366.1| nitric-oxide synthase [Staphylococcus aureus A6300]
 gi|257858034|gb|EEV80923.1| nitric-oxide synthase [Staphylococcus aureus A6224]
 gi|257864304|gb|EEV87054.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A5937]
 gi|262075514|gb|ACY11487.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus ED98]
 gi|282590037|gb|EFB95119.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A10102]
 gi|282764416|gb|EFC04542.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A8117]
 gi|285817279|gb|ADC37766.1| GTP-binding protein YqeH, possibly involved in replication
           initiation [Staphylococcus aureus 04-02981]
 gi|294968467|gb|EFG44491.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A8819]
 gi|297177349|gb|EFH36601.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A8796]
 gi|312829984|emb|CBX34826.1| GTPase of unknown function family protein [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|329727168|gb|EGG63624.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 366

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 25/153 (16%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           IR    + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++  
Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDESSFMY- 215

Query: 271 ISDTAGI------------RETDDIVEKEGIKRTFLEVENADLILL--LKEINSKKEISF 316
             DT GI            +E   I+ K+ IK+   ++  A  +    L  I+    +S 
Sbjct: 216 --DTPGIIQDHQMTHLVSEKELKIIMPKKEIKQRVYQLNEAQTLFFGGLARIDY---VSG 270

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
            K     F     +++ T TE+ + L  +  G+
Sbjct: 271 GKRPLVCFFSNDLNIHRTKTEKANDLWRNQLGD 303


>gi|315185423|gb|EFU19195.1| GTP-binding protein Era [Spirochaeta thermophila DSM 6578]
          Length = 290

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 24/153 (15%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT----------IDLDLEGY------ 267
           I+G  ++GKS+L N L  + VAI + +P TTR+ +           + +D  GY      
Sbjct: 8   IVGRPSSGKSTLLNTLCGRKVAITSPVPQTTRNRIRGIVTEERGQIVFIDTPGYHHSEKK 67

Query: 268 ---LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI- 323
               +K      ++E D+I+      R+  E E  +LI L+K+      I+  K ID   
Sbjct: 68  FNLFLKEQVIEALKEVDEILYLVDSTRSVGE-EEHELIELVKQAGKPVVIALNK-IDIPE 125

Query: 324 --FIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
               G    L + +       IS++TGEGLEEL
Sbjct: 126 HHAEGMVPLLKAHFPSAPIVKISAYTGEGLEEL 158


>gi|313140093|ref|ZP_07802286.1| GTP-binding protein Era [Bifidobacterium bifidum NCIMB 41171]
 gi|313132603|gb|EFR50220.1| GTP-binding protein Era [Bifidobacterium bifidum NCIMB 41171]
          Length = 344

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I ++G  N GKS+L NAL  K VAI +  P TTR  +   L  +   + + DT G
Sbjct: 35  RSGF-IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPG 93

Query: 277 I 277
           I
Sbjct: 94  I 94


>gi|302866049|ref|YP_003834686.1| GTP-binding proten HflX [Micromonospora aurantiaca ATCC 27029]
 gi|302568908|gb|ADL45110.1| GTP-binding proten HflX [Micromonospora aurantiaca ATCC 27029]
          Length = 487

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 50/104 (48%), Gaps = 13/104 (12%)

Query: 207 ISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTID 261
           + Q K     RN    V I G++NAGKSSL N L    V    A+   +  TTR   T D
Sbjct: 241 VRQTKRARRTRNAVPAVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTTRRATTSD 300

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL 303
               G L  +SDT G +R     IV  E  + T  EV +ADL++
Sbjct: 301 ----GRLYTLSDTVGFVRHLPHQIV--EAFRSTLEEVADADLVV 338


>gi|253732250|ref|ZP_04866415.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733152|ref|ZP_04867317.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
 gi|253724039|gb|EES92768.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728908|gb|EES97637.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
          Length = 366

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           IR    + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++  
Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDESSFMY- 215

Query: 271 ISDTAGI 277
             DT GI
Sbjct: 216 --DTPGI 220


>gi|254526472|ref|ZP_05138524.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9202]
 gi|221537896|gb|EEE40349.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9202]
          Length = 121

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 376 HKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFS 434
           ++RHL +LS  +  L +   + E     D+++  LR    +L KITG    E+LLD IFS
Sbjct: 56  NERHLANLSACLSNLNDTDEIIENKLPFDLLSIELRDGIQNLSKITGQELTEELLDNIFS 115

Query: 435 KFCIGK 440
           KFCIGK
Sbjct: 116 KFCIGK 121


>gi|167756987|ref|ZP_02429114.1| hypothetical protein CLORAM_02536 [Clostridium ramosum DSM 1402]
 gi|237732927|ref|ZP_04563408.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167703162|gb|EDS17741.1| hypothetical protein CLORAM_02536 [Clostridium ramosum DSM 1402]
 gi|229383996|gb|EEO34087.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 365

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 9/67 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKK------DVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           R+G  + I+G +N GKSSL N+L K       ++   ++ PGTT D++ I LD + YL  
Sbjct: 158 RHGRDVYIVGVTNVGKSSLINSLLKHYAGVTDNLITTSEFPGTTLDLIEIPLDDKNYLY- 216

Query: 271 ISDTAGI 277
             D+ GI
Sbjct: 217 --DSPGI 221


>gi|156103153|ref|XP_001617269.1| GTP-binding protein [Plasmodium vivax SaI-1]
 gi|148806143|gb|EDL47542.1| GTP-binding protein, putative [Plasmodium vivax]
          Length = 864

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK--DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +IIR+   I I+G  N GKS++FN L +K  + +IV     +TRD +  ++D +GY  ++
Sbjct: 279 KIIRSLPLISIIGRPNVGKSTIFNRLTRKFQEGSIVLG-ESSTRDKIYGEVDWDGYKFEV 337

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            DT G+   D+   K+   +  L +  + ++LL+
Sbjct: 338 VDTGGLLFEDEKFCKQIRDQIMLALNESSVVLLV 371


>gi|83942367|ref|ZP_00954828.1| GTP-binding protein HflX [Sulfitobacter sp. EE-36]
 gi|83846460|gb|EAP84336.1| GTP-binding protein HflX [Sulfitobacter sp. EE-36]
          Length = 412

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 27/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +   DV +  D+   T D     L L +G  + +SDT G    
Sbjct: 194 VALVGYTNAGKSTLFNRMTGADV-MAKDMLFATLDPTMRSLVLPDGPEIILSDTVGFISD 252

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYS-TYTE 337
                    + T  EV  AD+I  +++I+  +  S  +N+  I   +G   D  S     
Sbjct: 253 LPTELVAAFRATLEEVLAADIICHVRDISHAETESQARNVRDILTSLGVPKDTRSFEVWN 312

Query: 338 EYDHL--------------------ISSFTGEGLEELINKIKSILSNKFK--KLPFSIPS 375
           + D L                    IS+ TGEGL+EL   I   L    +  +L  +   
Sbjct: 313 KLDQLDDDRAAAVRARAQRDDSVLAISAITGEGLDELQAVIAEALQGAVREAELTLAFAD 372

Query: 376 HKRHLYHLSQTV 387
            K+  +   Q V
Sbjct: 373 GKKRAWLFEQDV 384


>gi|300864576|ref|ZP_07109435.1| GTP-binding protein Era [Oscillatoria sp. PCC 6506]
 gi|300337400|emb|CBN54583.1| GTP-binding protein Era [Oscillatoria sp. PCC 6506]
          Length = 350

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 27/174 (15%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKS+L N L  + +AI + +  TTR+ L   L  E   +   DT GI +    
Sbjct: 62  IIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLRGILTTEEAQIIFVDTPGIHKPHHQ 121

Query: 284 VEKEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKN-IDFIFIG 326
           + K  +    L + + D++L + +                +N++  +    N  D     
Sbjct: 122 LGKVLVHNAQLAIHSVDVLLFVVDASVPAGGGDRYIVDLLVNTQTPVILGLNKSDQQPSE 181

Query: 327 TKSDLYSTYTEEYDH------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +++ L +TYT+  +         S+ TGEG+E L    + IL    +  P+  P
Sbjct: 182 SQAQLDNTYTQLIEAKQWPIVKFSALTGEGVEAL----QQILIEHLEPGPYYYP 231


>gi|291531610|emb|CBK97195.1| GTP-binding protein HflX [Eubacterium siraeum 70/3]
          Length = 419

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 20/174 (11%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI--RET 280
           I+G++NAGKS+L NAL    V +  D    T D+ +  ++L +G    + DT G+  R  
Sbjct: 210 IVGYTNAGKSTLLNALTGAGV-LAEDKLFATLDLTSRAIELPDGRSFTLVDTVGLIRRLP 268

Query: 281 DDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEISFP-------KNIDFIFIGTK 328
             +V  E  K T  E  +AD+IL +      E   K + +           I  I +  K
Sbjct: 269 HHLV--EAFKSTLEEAASADIILHVCDASDPEAREKGQTTLSLLSELGCGEIPVITVLNK 326

Query: 329 SDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            D   Y     E   +IS+  G G +EL+  I   L++K  ++   IP  K  L
Sbjct: 327 CDKLDYELPPAENTVMISAKNGTGFDELLKAISDNLTDKVSRMEMLIPYDKSGL 380


>gi|240139575|ref|YP_002964051.1| putative GTPase (HflX) [Methylobacterium extorquens AM1]
 gi|240009548|gb|ACS40774.1| putative GTPase (HflX) [Methylobacterium extorquens AM1]
          Length = 471

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 45/195 (23%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD--------LEGY 267
           R  Y IV L G++NAGKS+LFNAL K +V          +D+L   LD          G 
Sbjct: 225 RVPYPIVALVGYTNAGKSTLFNALTKAEV--------RAQDMLFATLDPTARATKLPHGE 276

Query: 268 LVKISDTAG------------IRET-DDIVEKE------GIKRTFLEVENADLILLLKEI 308
            V +SDT G             R T +D++E +       +     + +  D+  +L+E+
Sbjct: 277 TVILSDTVGFISDLPTSLIAAFRATLEDVIEADILLHVRDVSHGDTQAQADDVEGVLREL 336

Query: 309 ----NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEELINKIK 359
               ++++ I      D +  G ++ L +             L+S+ TGEGL EL  +I+
Sbjct: 337 GIEADAERIIEVWNKADLLDEGERTRLLNLSAAHRGAGPAPILVSALTGEGLPELTERIE 396

Query: 360 SILSNKFKKLPFSIP 374
             ++        ++P
Sbjct: 397 GQVARARSTFAVTLP 411


>gi|227883864|ref|ZP_04001669.1| small GTP-binding domain protein [Escherichia coli 83972]
 gi|300984874|ref|ZP_07177162.1| small GTP-binding protein [Escherichia coli MS 45-1]
 gi|227839142|gb|EEJ49608.1| small GTP-binding domain protein [Escherichia coli 83972]
 gi|300408303|gb|EFJ91841.1| small GTP-binding protein [Escherichia coli MS 45-1]
 gi|307555789|gb|ADN48564.1| conserved hypothetical protein containing GTP-binding domain
           [Escherichia coli ABU 83972]
 gi|315292943|gb|EFU52295.1| small GTP-binding protein [Escherichia coli MS 153-1]
          Length = 337

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K+ E I     I ++G + AGKSS+ NAL K +V  V+D+   TR+V  + +    + +K
Sbjct: 71  KISEAIDYEPVIGVMGKTGAGKSSVCNALFKGEVCAVSDVEACTREVQELHIRFGKHSLK 130

Query: 271 ISDTAGIRET 280
           I D  G+ E 
Sbjct: 131 IIDIPGVGEN 140


>gi|321315513|ref|YP_004207800.1| putative GTP-binding protein protease modulator [Bacillus subtilis
           BSn5]
 gi|320021787|gb|ADV96773.1| putative GTP-binding protein protease modulator [Bacillus subtilis
           BSn5]
          Length = 420

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +NG  +I ++G++NAGKS+ FN L   D +   D+   T D +T  + L  GY V ++DT
Sbjct: 197 KNGVLQIALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLTDT 255

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            G  +          + T  EV+ ADLIL L
Sbjct: 256 VGFIQDLPTTLIAAFRSTLEEVKEADLILHL 286


>gi|331650408|ref|ZP_08351480.1| putative small GTP-binding protein domain protein [Escherichia coli
           M605]
 gi|331040802|gb|EGI12960.1| putative small GTP-binding protein domain protein [Escherichia coli
           M605]
          Length = 337

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K+ E I     I ++G + AGKSS+ NAL K +V  V+D+   TR+V  + +    + +K
Sbjct: 71  KISEAIDYEPVIGVMGKTGAGKSSVCNALFKGEVCAVSDVEACTREVQKLRIRFGKHSLK 130

Query: 271 ISDTAGIRET 280
           I D  G+ E 
Sbjct: 131 IIDIPGVGEN 140


>gi|227500637|ref|ZP_03930686.1| GTP-binding protein, possible GTPase [Anaerococcus tetradius ATCC
           35098]
 gi|227217224|gb|EEI82568.1| GTP-binding protein, possible GTPase [Anaerococcus tetradius ATCC
           35098]
          Length = 382

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
           I I G +N+GKSSL N +   D AIV++I GTT D +   +++  +  V   DTAG+ +
Sbjct: 11  IGIFGQTNSGKSSLLNYMTGTDTAIVSNIAGTTTDPIRKAMEITDFGPVLFIDTAGVND 69


>gi|315502608|ref|YP_004081495.1| gtp-binding proten hflx [Micromonospora sp. L5]
 gi|315409227|gb|ADU07344.1| GTP-binding proten HflX [Micromonospora sp. L5]
          Length = 487

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 50/104 (48%), Gaps = 13/104 (12%)

Query: 207 ISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTID 261
           + Q K     RN    V I G++NAGKSSL N L    V    A+   +  TTR   T D
Sbjct: 241 VRQTKRARRTRNAVPAVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTTRRATTSD 300

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL 303
               G L  +SDT G +R     IV  E  + T  EV +ADL++
Sbjct: 301 ----GRLYTLSDTVGFVRHLPHQIV--EAFRSTLEEVADADLVV 338


>gi|88855440|ref|ZP_01130104.1| GTP-binding protein [marine actinobacterium PHSC20C1]
 gi|88815347|gb|EAR25205.1| GTP-binding protein [marine actinobacterium PHSC20C1]
          Length = 516

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 27/176 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L +  V    A+   +  T R   T D    G L  +SDT G 
Sbjct: 297 VAIAGYTNAGKSSLLNRLTRAGVLVENALFATLDATVRRSETAD----GRLFTLSDTVGF 352

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEIS---FPKNIDFIFI 325
                    E  + T  E+  AD+I+ +          ++++ +++      ++I  I +
Sbjct: 353 VRNLPHQLVEAFRSTLEEIGQADVIVHVVDASHPDPGAQLSTVRDVIGELGARDIPEIVV 412

Query: 326 GTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             KSDL            E     +S+ +GEG++EL ++I  +L     K+   +P
Sbjct: 413 FNKSDLADDDQRLVIRGLEPTGIFVSARSGEGIDELNSRIAELLPAPEIKVTLLVP 468


>gi|329767815|ref|ZP_08259331.1| ribosome biogenesis GTPase YqeH [Gemella haemolysans M341]
 gi|328838916|gb|EGF88510.1| ribosome biogenesis GTPase YqeH [Gemella haemolysans M341]
          Length = 372

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 34/185 (18%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + I+G +N GKS+  N L       K+V   +  PGTT  ++ I LD       
Sbjct: 161 LRNGKDVYIVGATNVGKSTFINKLIELTTGDKNVITTSHFPGTTLGMIEIPLD---RATS 217

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFP--KNID 321
           I DT GI    DI         +L+ ++  L++  KEI       N+++ + F     +D
Sbjct: 218 IYDTPGIILDYDIAH-------YLDAQSLKLVMPKKEIKARVFQLNAEQSLFFGGMARMD 270

Query: 322 FI---------FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           F+         +     +++ T     D L     G  L+       SI +N+ KK  F+
Sbjct: 271 FVEGERQSFTLYASNLVEIHRTKLSNADALFEKHLGTLLKPPFEDNISIFNNQVKK-SFT 329

Query: 373 IPSHK 377
           I S K
Sbjct: 330 IDSRK 334


>gi|225377164|ref|ZP_03754385.1| hypothetical protein ROSEINA2194_02810 [Roseburia inulinivorans DSM
           16841]
 gi|225211069|gb|EEG93423.1| hypothetical protein ROSEINA2194_02810 [Roseburia inulinivorans DSM
           16841]
          Length = 302

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVK 270
           + E  ++G+ + I+G  N GKS+L N L  + +AI ++ P TTR+ + T+  D+E   + 
Sbjct: 1   MNEKFKSGF-VTIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTDMERGQIV 59

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
             DT GI    + + +  +      +   D+IL L E
Sbjct: 60  FLDTPGIHRAKNKLGEYMVNVAEHTLNEVDVILWLVE 96


>gi|254503598|ref|ZP_05115749.1| GTP-binding protein Era [Labrenzia alexandrii DFL-11]
 gi|222439669|gb|EEE46348.1| GTP-binding protein Era [Labrenzia alexandrii DFL-11]
          Length = 337

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 32/192 (16%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYL 268
           G +    + G+ + ++G  NAGKS+L N L    V+IVT    TTR ++  + +     L
Sbjct: 37  GAMPSDTKAGF-VALIGAPNAGKSTLINQLVGTKVSIVTHKVQTTRSIVRGVAMHGTAQL 95

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI-------------- 314
           V I DT GI +    +++  +   +    +AD+I LL  I+++K I              
Sbjct: 96  VFI-DTPGIFKPKRRLDRAMVDTAWGGARDADVIALL--IDARKGIDEEVEQILKRLKGQ 152

Query: 315 SFPKNI-----------DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           S PK +             + +  K++ Y  + E +  ++S+ TG+G +++++   S + 
Sbjct: 153 SAPKVLILNKTDVANREKLLKLAQKANEYLEFEETF--MVSALTGDGTQQILDYFASKMP 210

Query: 364 NKFKKLPFSIPS 375
           +     P   PS
Sbjct: 211 DGPWLYPEDQPS 222


>gi|126172808|ref|YP_001048957.1| GTP-binding protein, HSR1-related [Shewanella baltica OS155]
 gi|153002272|ref|YP_001367953.1| GTP-binding protein HSR1-like [Shewanella baltica OS185]
 gi|125996013|gb|ABN60088.1| GTP-binding protein, HSR1-related [Shewanella baltica OS155]
 gi|151366890|gb|ABS09890.1| GTP-binding protein HSR1-related [Shewanella baltica OS185]
          Length = 435

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 34/227 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFNAL   DV     +  T    L   LDL    V ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNALTSSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDF-----IFIGT 327
             D+V     K T  E   A+L+L + +        N  +  S  K+I+      + +  
Sbjct: 259 PHDLV--AAFKATLQETRQAELLLHIIDCADENMADNFDQVQSVLKDIEADEVMQLVVCN 316

Query: 328 KSDLYSTYTE--EYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           K DL    T   EY+ +       +S+    G + L+  I  ++    K+L   IP+   
Sbjct: 317 KIDLLEDVTPRIEYNDIGKPVRVWVSAQKRLGFDLLLKAITELIGEVIKELTLRIPATAG 376

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419
           H  +L Q  R   +      D G  I++  L      RLA  S G++
Sbjct: 377 H--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDADWRRLAKQSQGEL 421


>gi|306821418|ref|ZP_07455023.1| ribosome biogenesis GTP-binding protein YsxC [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550540|gb|EFM38526.1| ribosome biogenesis GTP-binding protein YsxC [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 195

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 27/168 (16%)

Query: 222 IVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIR 278
           I + G SN GKSSL N+ L +K +A V+  PG TR +    ++   YLV +     A + 
Sbjct: 26  IALAGRSNVGKSSLINSLLNRKSLARVSGTPGKTRTINFFIINESFYLVDLPGYGYAKLS 85

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--------FIGTKSD 330
           +T+     + ++  F + +N   + LL +I  + + S  +  D+          I TKSD
Sbjct: 86  KTEQESWGKTMELYFSKSKNLKHVFLLLDIRHEPKASDKQMYDYCKYYDIPVDIIATKSD 145

Query: 331 LYS--TYTEEYDHL--------------ISSFTGEGLEELINKIKSIL 362
             S   Y + +  +              ISS    G+EEL N ++S++
Sbjct: 146 KISRGAYQKSFSIMKKFLQIKEEIKIFPISSLNKSGIEELSNYMESVI 193


>gi|298291622|ref|YP_003693561.1| GTP-binding protein Era [Starkeya novella DSM 506]
 gi|296928133|gb|ADH88942.1| GTP-binding protein Era [Starkeya novella DSM 506]
          Length = 304

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 24/160 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTA 275
           R G+ + ++G  NAGKS+L NAL    V+IV+    TTR  L   + LEG   + + DT 
Sbjct: 9   RCGF-VALIGAPNAGKSTLTNALVGTKVSIVSHKVQTTRS-LVRGIALEGTTQIILVDTP 66

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPK----- 318
           GI      +EK  ++  +    +AD ++LL +            I    ++  P+     
Sbjct: 67  GIFAPKRRLEKAMVRSAWSGAGDADAVVLLVDARAGMTEDVEAIIKGLADVKRPRAILLN 126

Query: 319 NIDFIFIGTKSDLYSTYTE--EYDHL--ISSFTGEGLEEL 354
            ID +   +  +L +   E   +D L  +S+  G+GL+EL
Sbjct: 127 KIDLVKRDSLLELAAKVAELISFDRLFMVSAQNGDGLKEL 166


>gi|259090130|pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
           Iransporter
          Length = 168

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 67/160 (41%), Gaps = 27/160 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ + G  N GK+SLFNAL       V + PG T +        +GY + + D  G    
Sbjct: 7   KVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-INSKKE-------ISFPKNIDFIF-------- 324
                 E I R +L   +ADL++L+ + +N ++        +   K +            
Sbjct: 66  GYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKK 125

Query: 325 IGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKI 358
            G K D Y    E   HL       SS TGEGLEEL  KI
Sbjct: 126 TGMKIDRY----ELQKHLGIPVVFTSSVTGEGLEELKEKI 161


>gi|224282934|ref|ZP_03646256.1| GTP-binding protein Era [Bifidobacterium bifidum NCIMB 41171]
          Length = 336

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I ++G  N GKS+L NAL  K VAI +  P TTR  +   L  +   + + DT G
Sbjct: 27  RSGF-IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPG 85

Query: 277 I 277
           I
Sbjct: 86  I 86


>gi|83952201|ref|ZP_00960933.1| GTP-binding protein HflX [Roseovarius nubinhibens ISM]
 gi|83837207|gb|EAP76504.1| GTP-binding protein HflX [Roseovarius nubinhibens ISM]
          Length = 425

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 26/168 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           + ++G++NAGKS+LFN L   DV +  D+   T D  +  + L   G  V +SDT G   
Sbjct: 206 VALVGYTNAGKSTLFNRLTGSDV-MAKDMLFATLDPTMRKVSLPHGGPDVILSDTVGFIS 264

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------------IG 326
                     + T  EV +ADL++ +++I+  +     ++++ I              + 
Sbjct: 265 DLPTELVAAFRATLEEVVSADLVVHVRDISHPETEEQARDVEAILESLDVAEGTPRIELW 324

Query: 327 TKSDLY-----STYTEEYDH-----LISSFTGEGLEELINKIKSILSN 364
            K+DL       T+  +        L+S+ +GEG+E  +++    LS 
Sbjct: 325 NKADLLDPEARETFANQAARREEVILVSAVSGEGMEAFVDQATEALSG 372


>gi|320534682|ref|ZP_08035123.1| GTP-binding protein HflX [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320133116|gb|EFW25623.1| GTP-binding protein HflX [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 532

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 28/177 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L +  +    A+   +  T R   T     EG    ++DT G 
Sbjct: 310 VAIAGYTNAGKSSLMNRLTEAGIMVEDALFATLDPTVRRAETS----EGRTYTLTDTVGF 365

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEI--SFPKNIDF--IF 324
                    E  + T  EV  ADL+L          L ++ + + +    P  +D   + 
Sbjct: 366 VRNLPHELIEAFRSTLEEVAGADLVLHVVDAAHPDPLSQVAAVRTVLSEIPGALDVPELI 425

Query: 325 IGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +  K+DL    T             +S+ TGEG+EEL  +I+ +L +    +   +P
Sbjct: 426 VLNKTDLADAVTLAALRTGLPGAVAVSARTGEGIEELRARIEQMLPHPQVSIDVVVP 482


>gi|308274309|emb|CBX30908.1| Probable GTP-binding protein engB [uncultured Desulfobacterium sp.]
          Length = 202

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 19/139 (13%)

Query: 222 IVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTR--------DVLTIDLDLEGY-LVKI 271
           I   G SN GKSSL N  L +K++   +  PG T+        D L   +D+ GY   K+
Sbjct: 26  IAFAGRSNVGKSSLINTLLNRKNLVKTSSTPGRTQLINFFLINDTLGF-VDIPGYGYAKV 84

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----NIDFIFIG 326
              A +R+T   + +  I +T   ++   LIL L+ I   +EI+F       NI FI + 
Sbjct: 85  P--AAVRKTWGTMIETYI-QTRKTLKGVVLILDLRRIPGPEEITFMDWLNYYNIPFILVL 141

Query: 327 TKSDLYSTYTEEYDHLISS 345
           TK+D  S   +   H+I S
Sbjct: 142 TKADKLSKTNQVKQHMIIS 160


>gi|307332545|ref|ZP_07611598.1| GTP-binding protein YchF [Streptomyces violaceusniger Tu 4113]
 gi|306881801|gb|EFN12934.1| GTP-binding protein YchF [Streptomyces violaceusniger Tu 4113]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 26/42 (61%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +SSH   GKL E+      I I+G  N GKS+LFNAL K DV
Sbjct: 33  LSSHPDHGKLREVANVSLTIGIVGLPNVGKSTLFNALTKNDV 74


>gi|308233432|ref|ZP_07664169.1| GTP-binding protein HflX [Atopobium vaginae DSM 15829]
 gi|328944039|ref|ZP_08241504.1| GTP-binding protein [Atopobium vaginae DSM 15829]
 gi|327492008|gb|EGF23782.1| GTP-binding protein [Atopobium vaginae DSM 15829]
          Length = 461

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 11/122 (9%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAI----VT 248
           I  +K  +++   Q K+   IR+    YKI ++G++NAGKS+L N ++     +      
Sbjct: 185 IAHVKQQLAALEIQRKVQRSIRSSSPLYKIALVGYTNAGKSTLLNRISHSSTYVKDELFA 244

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
            +  TTR +   D         +SDT G  +       +  K T L+V +ADL+L + ++
Sbjct: 245 TLDSTTRSITLPDTR----RAVLSDTVGFIQKLPTELIDAFKSTLLDVVSADLLLCVVDV 300

Query: 309 NS 310
           +S
Sbjct: 301 SS 302


>gi|27905016|ref|NP_778142.1| putative GTP-binding protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46395803|sp|Q89A14|DER_BUCBP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|27904414|gb|AAO27247.1| putative GTP-binding protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 462

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD---VLTIDLDLEGYLVKISDTAGI 277
           KI I+G  N GKS+L N L  +   IV   PGTTRD    L I   +        DTAGI
Sbjct: 202 KIAIIGKPNVGKSTLINVLLNEKRVIVDSNPGTTRDSNWSLIIRNKINYMFF---DTAGI 258

Query: 278 RETDDI---VEKEGIKRTF 293
           R+ + I   +EK  + +T 
Sbjct: 259 RKKNKISTYIEKISVHKTL 277


>gi|331269214|ref|YP_004395706.1| HSR1-like GTP-binding protein [Clostridium botulinum BKT015925]
 gi|329125764|gb|AEB75709.1| GTP-binding protein, HSR1-related protein [Clostridium botulinum
           BKT015925]
          Length = 613

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 38/203 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAK----KDV-----AIVTDIPGTTRDVLTIDLDL-EGYLVK 270
           K+ ++G++NAGKS+L N L +    KDV         D+   T DV T  L L +  L+ 
Sbjct: 381 KVSLVGYTNAGKSTLRNKLCEIASPKDVYQKEEVFEADMLFATLDVTTRALILPDNRLIT 440

Query: 271 ISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---- 324
           ++DT G IR+   D+V  E  K T  EV N++L+L + + +S+      + ++ +     
Sbjct: 441 LTDTVGFIRKLPHDLV--EAFKSTLEEVINSELLLHVVDASSESACKQIEAVNLVLEELG 498

Query: 325 ------------IGTKSD-LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFK 367
                       + T S+   S   EEY++L    IS  +   L+ L+ +I  +L N  +
Sbjct: 499 AADKPMILLLNKVDTASNERLSKLKEEYNNLNILEISGKSNINLDLLLEEICKVLPNPLR 558

Query: 368 KLPFSIP---SHKRHLYHLSQTV 387
           K+ + IP   S    L H S  V
Sbjct: 559 KVEYLIPYSDSASVALLHRSAKV 581


>gi|300113379|ref|YP_003759954.1| GTP-binding protein Era [Nitrosococcus watsonii C-113]
 gi|299539316|gb|ADJ27633.1| GTP-binding protein Era [Nitrosococcus watsonii C-113]
          Length = 307

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 2/102 (1%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++Q    E IR GY I I+G  N GKSSL N +  + ++I +  P TTR  +     L G
Sbjct: 5   LTQEGTQESIRCGY-IAIIGRPNVGKSSLLNRILDQKISITSRRPQTTRHRILGIKTLPG 63

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLKE 307
                 DT G ++ +  +    + R     +E  DLIL + E
Sbjct: 64  IQAIYVDTPGFQDKERRLMNRYLNRAIDSTLEEVDLILFVIE 105


>gi|284162051|ref|YP_003400674.1| GTP-binding protein HSR1-related protein [Archaeoglobus profundus
           DSM 5631]
 gi|284012048|gb|ADB58001.1| GTP-binding protein HSR1-related protein [Archaeoglobus profundus
           DSM 5631]
          Length = 246

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+V++G+ N GKSSL N LA+   A    +PG T+    I   + G +V +SDT GI   
Sbjct: 101 KLVLIGYPNVGKSSLINMLAQYTAASTAPVPGHTKGKQWI--RISGKIV-LSDTPGIIPR 157

Query: 281 DDIVEKEGIKRTF-LEVENADLILLLK 306
            +   K+  K  F  +VE + LILL K
Sbjct: 158 -EYASKDWAKILFPRDVEESALILLEK 183


>gi|149002055|ref|ZP_01827009.1| GTP-binding protein [Streptococcus pneumoniae SP14-BS69]
 gi|147759864|gb|EDK66854.1| GTP-binding protein [Streptococcus pneumoniae SP14-BS69]
          Length = 336

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 45/173 (26%)

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
           SG++S    QW+ K  H       D+  +  ++    + KEV++ I              
Sbjct: 86  SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 125

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265
              E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD  
Sbjct: 126 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 182

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
            Y   I DT GI     +         +L  +N      LK ++ KKEI  PK
Sbjct: 183 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PK 218


>gi|326405800|gb|ADZ62871.1| GTP-binding protein [Lactococcus lactis subsp. lactis CV56]
          Length = 401

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 15/103 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ K     +DV   +  PGTT + + I LD +  L
Sbjct: 195 EYYRRGRDVYVVGVTNVGKSTLINAIIKSASGSEDVITTSRFPGTTLNKIEIPLDEDSAL 254

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           +   DT GI     +         +LE E+   +   KEI  K
Sbjct: 255 I---DTPGIIHRGQMAH-------YLEPEDLKYVSPRKEIKPK 287


>gi|295398703|ref|ZP_06808725.1| ribosome biogenesis GTPase YqeH [Aerococcus viridans ATCC 11563]
 gi|294973056|gb|EFG48861.1| ribosome biogenesis GTPase YqeH [Aerococcus viridans ATCC 11563]
          Length = 375

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDL-DLEGYLV 269
           +R+G  + ++G +N GKSSL N +      + DV   +  PGTT D++ I   D EG   
Sbjct: 163 MRDGRDVYVIGMANVGKSSLINRILQATGVEADVITTSQFPGTTLDLIDIPFDDAEGNEA 222

Query: 270 KISDTAGI 277
            + DT GI
Sbjct: 223 SLIDTPGI 230


>gi|291059918|gb|ADD72653.1| GTP-binding protein Era [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 321

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G   R+G  ++I G  ++GKS+  NA+    V+IV+ IP TTR+ +   +++E   +   
Sbjct: 7   GASPRSGVSLII-GRPSSGKSTFLNAVCGYKVSIVSPIPQTTRNTVRGIVNIESDQIVFM 65

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           DT G   +D              V++AD++L L
Sbjct: 66  DTPGYHRSDRKFNLRLQSLVHSNVKDADVLLYL 98


>gi|254504147|ref|ZP_05116298.1| GTP-binding proten HflX [Labrenzia alexandrii DFL-11]
 gi|222440218|gb|EEE46897.1| GTP-binding proten HflX [Labrenzia alexandrii DFL-11]
          Length = 431

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 41/242 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN L + +V    D+   T D     + L  G  + +SDT G    
Sbjct: 202 VALVGYTNAGKSTLFNRLTESEV-FAKDLLFATLDPTLRKITLPHGREIILSDTVGFISD 260

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKE-------------------ISF 316
                    + T  EV  ADLIL +++I     +++ E                   I  
Sbjct: 261 LPTHLVAAFRATLEEVLEADLILHVRDISHADTDAQAEDVQKTLEELGVDALTGAPIIEV 320

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
              ID +    ++ L S    E    +S+ TGEG+E L  ++ S ++     L   +P  
Sbjct: 321 WNKIDLLDKDYRAKLLSEEQGEGPVALSAVTGEGIEHLSARVDSFMARHDDILSVRVPVA 380

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436
           +  L       +  +MA + E+  G + +   +R++    G              +F KF
Sbjct: 381 EGALI-----AKLYQMAEVLERSDGEEYVIAEVRVSDKQRGPFRD----------LFGKF 425

Query: 437 CI 438
            I
Sbjct: 426 AI 427


>gi|206891076|ref|YP_002248190.1| GTP-binding protein Era [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206743014|gb|ACI22071.1| GTP-binding protein Era [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 289

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++ GY + ++G  N GKS+L N +  + V+IVT+ P TTR+ +T   +L    +   DT 
Sbjct: 1   MKCGY-VALIGRPNVGKSTLINTVIGEKVSIVTEKPQTTRNRITGIKNLPNAQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           GI +    + +  +K     ++  DLI+ + E
Sbjct: 60  GIHKPRHKLGEFMVKEAQEAMDMVDLIVFMVE 91


>gi|15639530|ref|NP_218980.1| GTP-binding protein Era [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025769|ref|YP_001933541.1| GTP-binding protein Era [Treponema pallidum subsp. pallidum SS14]
 gi|13959351|sp|O83552|ERA_TREPA RecName: Full=GTPase Era
 gi|226741402|sp|B2S3D3|ERA_TREPS RecName: Full=GTPase Era
 gi|3322831|gb|AAC65525.1| GTP-binding protein (era) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018344|gb|ACD70962.1| GTP-binding protein [Treponema pallidum subsp. pallidum SS14]
          Length = 319

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G   R+G  ++I G  ++GKS+  NA+    V+IV+ IP TTR+ +   +++E   +   
Sbjct: 5   GASPRSGVSLII-GRPSSGKSTFLNAVCGYKVSIVSPIPQTTRNTVRGIVNIESDQIVFM 63

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           DT G   +D              V++AD++L L
Sbjct: 64  DTPGYHRSDRKFNLRLQSLVHSNVKDADVLLYL 96


>gi|269976802|ref|ZP_06183777.1| GTP-binding protein Era [Mobiluncus mulieris 28-1]
 gi|307700621|ref|ZP_07637649.1| GTP-binding protein Era [Mobiluncus mulieris FB024-16]
 gi|269934999|gb|EEZ91558.1| GTP-binding protein Era [Mobiluncus mulieris 28-1]
 gi|307614151|gb|EFN93392.1| GTP-binding protein Era [Mobiluncus mulieris FB024-16]
          Length = 303

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 3/102 (2%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+ + +LG  N GKS+L N +  + +AI +  P TTR V    +   G+ + + D
Sbjct: 12  EDFRAGF-VAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVARGIVHRPGFQLVLVD 70

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           T GI     ++ +    R  +E   AD+ LL+  + + +EI 
Sbjct: 71  TPGIHRPRTLLGQRLNDR--VEEAQADVDLLVFCVPADQEIG 110


>gi|320668156|gb|EFX35023.1| hypothetical protein ECOSU61_14471 [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 163

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA--GIRETD 281
           I+G S AGKSSL NAL + +V  V+D+   TR+V    L+  G+ + I+D A  G    D
Sbjct: 41  IMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLNGHGHSMVITDLARGGRGGRD 100

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              E E + R  L     DL+L L
Sbjct: 101 RDAEYEALYRDIL--PELDLVLWL 122


>gi|310287377|ref|YP_003938635.1| GTP-binding protein Era [Bifidobacterium bifidum S17]
 gi|309251313|gb|ADO53061.1| GTP-binding protein Era [Bifidobacterium bifidum S17]
          Length = 336

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I ++G  N GKS+L NAL  K VAI +  P TTR  +   L  +   + + DT G
Sbjct: 27  RSGF-IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPG 85

Query: 277 I 277
           I
Sbjct: 86  I 86


>gi|268610927|ref|ZP_06144654.1| small GTP-binding protein [Ruminococcus flavefaciens FD-1]
          Length = 399

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 11/139 (7%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIV 284
           G  NAGKSS+ NA+  +++++V+D+ GTT D +T  ++L     V I DT G  +   + 
Sbjct: 18  GRRNAGKSSVVNAVTGQELSVVSDVKGTTTDPVTKAMELLPLGPVVIIDTPGFDDVGTLG 77

Query: 285 EKEGIKRTFLEVENADLILLLKEINS------KKEISF--PKNIDFIFIGTKSDLYSTY- 335
           E   +++T   +   DL +L+ + ++      K+ I     K+I +I +  KSD+     
Sbjct: 78  EMR-VRKTKQILNRTDLAVLIVDNSTGLSDTDKQLIGIFKEKDIPYITVYNKSDIAPKAD 136

Query: 336 TEEYDHLISSFTGEGLEEL 354
            +E +  +S+   E + EL
Sbjct: 137 CKEGEISVSAVCRENIHEL 155


>gi|194430709|ref|ZP_03063138.1| ribosome biogenesis GTP-binding protein YsxC [Escherichia coli
           B171]
 gi|194411246|gb|EDX27639.1| ribosome biogenesis GTP-binding protein YsxC [Escherichia coli
           B171]
          Length = 197

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 222 IVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           I  LG SN GKSSL NA L +K VA V+  PG T+ +    +D + YLV + 
Sbjct: 25  IAFLGRSNVGKSSLINAFLNRKKVAKVSSTPGFTKALNFFRIDFKFYLVDLP 76


>gi|188997612|ref|YP_001931863.1| GTP-binding protein Era [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932679|gb|ACD67309.1| GTP-binding protein Era [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 307

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 38/186 (20%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  N GKS+L N +    ++IV+  P TTR  +     L    +   DT G
Sbjct: 11  RAGF-VAIVGRPNVGKSTLLNNIIGTKLSIVSPRPQTTRMRILGVKHLPDAQIIFLDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-----------KEI--NSKKEISFP-----K 318
           +++  D++ K  ++     +E+AD+IL++           KEI  N  K++  P      
Sbjct: 70  VQKGGDLLTKSVMEFVISGIESADVILMVIDAETGWTKEDKEIVENYLKKVDKPAILAIN 129

Query: 319 NIDFIFIGTKSDLYSTYTEE----YDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            ID I    K DL     EE    YD      IS+     ++ELI  IK       K LP
Sbjct: 130 KIDKI----KRDLVLPLIEESTKIYDFKEFVPISAIKNLNIDELIETIK-------KYLP 178

Query: 371 FSIPSH 376
            S+P +
Sbjct: 179 ESLPLY 184


>gi|311064218|ref|YP_003970943.1| GTP-binding protein [Bifidobacterium bifidum PRL2010]
 gi|310866537|gb|ADP35906.1| Era GTP-binding protein [Bifidobacterium bifidum PRL2010]
          Length = 336

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I ++G  N GKS+L NAL  K VAI +  P TTR  +   L  +   + + DT G
Sbjct: 27  RSGF-IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPG 85

Query: 277 I 277
           I
Sbjct: 86  I 86


>gi|311278012|ref|YP_003940243.1| GTP-binding protein HSR1-related protein [Enterobacter cloacae
           SCF1]
 gi|308747207|gb|ADO46959.1| GTP-binding protein HSR1-related protein [Enterobacter cloacae
           SCF1]
          Length = 287

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G +  GKSSL NAL    V+ V+D+   TRD L   L +  + + I D  G+ E+ 
Sbjct: 39  IGIMGKTGVGKSSLCNALFADKVSPVSDVTACTRDPLCFRLQVGEHAMTIVDLPGVGESG 98

Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305
              +E   + R   ++   DLIL L
Sbjct: 99  ARDIEYAALYRK--QLPRLDLILWL 121


>gi|284989127|ref|YP_003407681.1| GTP-binding proten HflX [Geodermatophilus obscurus DSM 43160]
 gi|284062372|gb|ADB73310.1| GTP-binding proten HflX [Geodermatophilus obscurus DSM 43160]
          Length = 384

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 31/162 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + + G++NAGKS+L N LA  DV    A+   +  T R   T D    G    ++DT G 
Sbjct: 224 VALTGYTNAGKSALLNRLAGADVLVQDALFATLDPTVRRTRTPD----GRPYTLTDTVGF 279

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSK--KEISF 316
                    +  + T  EV +ADL+L                   +L EI ++   E+  
Sbjct: 280 VRHLPHQLVDAFRSTLEEVVDADLVLHVVDASAPDAMDQVTAVRGVLHEIGARDHPELLA 339

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
              +D    G  + L + Y +     +S+ TGEG EEL   I
Sbjct: 340 LNKVDVAPEGWLAALRAAYPDAVP--VSALTGEGAEELRRAI 379


>gi|154148623|ref|YP_001406618.1| GTP-binding protein Era [Campylobacter hominis ATCC BAA-381]
 gi|189037255|sp|A7I277|ERA_CAMHC RecName: Full=GTPase Era
 gi|153804632|gb|ABS51639.1| GTP-binding protein Era [Campylobacter hominis ATCC BAA-381]
          Length = 289

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 8/121 (6%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT-DIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++G+ + ++G +NAGKSSL N L  + +A+V+  I  T R +  I +  E  ++ I DT
Sbjct: 1   MKSGF-VSLIGRTNAGKSSLLNFLVGERLAMVSHKINATRRKINGIAMFGEDQIIFI-DT 58

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKS 329
            G+ +++ I+ K  I      + +ADL+L L  I+         +   K    I I TK+
Sbjct: 59  PGLHKSEKIMNKLMIDVAIKSIGDADLVLFLASIHDDTRDYEEFLKIAKRPPHILILTKT 118

Query: 330 D 330
           D
Sbjct: 119 D 119


>gi|124025484|ref|YP_001014600.1| GTPase SAR1 and related small G proteins [Prochlorococcus marinus
           str. NATL1A]
 gi|123960552|gb|ABM75335.1| GTPase SAR1 and related small G proteins [Prochlorococcus marinus
           str. NATL1A]
          Length = 517

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKI 271
           E+ R    +V+ G  ++GK+SL  AL KK V  V+   G+TR   T  L L+G    ++I
Sbjct: 118 ELDRGDIILVVFGIGSSGKTSLIRALLKKIVGKVSPEMGSTRGKETFRLKLKGLTRGIRI 177

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            DT GI E+     +E  K   +E   +DL+L++ E
Sbjct: 178 IDTPGILESGR-GGREREKSALMEARKSDLMLVVIE 212


>gi|70951784|ref|XP_745105.1| GTP-binding protein [Plasmodium chabaudi chabaudi]
 gi|56525322|emb|CAH75281.1| GTP-binding protein, putative [Plasmodium chabaudi chabaudi]
          Length = 264

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 27/129 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDL-------DLEGY-LVKI 271
           +I I G SN GKSSL NAL   ++VA  +  PG TR +   +L       DL GY   K+
Sbjct: 61  QIAIFGRSNVGKSSLINALMNYREVAQASKTPGRTRHLFIYNLLNHISVVDLPGYGFAKV 120

Query: 272 S----DTAGIRETDDIVEKEGIKRTFLEVENA------DLILLLKEINSKKEISFPKNID 321
           S    D   I   + + + + +KR    +E        D +LL        ++   KNI 
Sbjct: 121 SKELRDNWSILIEEYLNKAKNLKRALCLIECTELFTPYDYVLL--------DMFIMKNIP 172

Query: 322 FIFIGTKSD 330
           F  I TK D
Sbjct: 173 FQIIVTKID 181


>gi|294782449|ref|ZP_06747775.1| GTP-binding protein Era [Fusobacterium sp. 1_1_41FAA]
 gi|294481090|gb|EFG28865.1| GTP-binding protein Era [Fusobacterium sp. 1_1_41FAA]
          Length = 297

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +  + VAIV+D  GTTRD +   L+++       DT GI +  
Sbjct: 6   IAIVGRPNVGKSTLINKMVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ +         +++ D+IL L
Sbjct: 66  HLLGEYMTNIAVNILKDVDIILFL 89


>gi|291563937|emb|CBL42753.1| GTP-binding protein Era [butyrate-producing bacterium SS3/4]
          Length = 300

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 216 IRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKI 271
           ++ GYK   + ++G  N GKS+L N L  + +AI ++ P TTR+ + T+  D  G ++ +
Sbjct: 1   MKKGYKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSEKPQTTRNRIQTVYTDEHGQIIFL 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            DT GI +  + + +  +      +   D+IL L E
Sbjct: 61  -DTPGIHKAKNKLGEYMVNVAEHTLREVDVILWLVE 95


>gi|238027973|ref|YP_002912204.1| YeeP [Burkholderia glumae BGR1]
 gi|237877167|gb|ACR29500.1| YeeP [Burkholderia glumae BGR1]
          Length = 286

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 219 GY--KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDT 274
           GY  +I +LG +  GKS+LFNAL   DVA V+D+   TR    + L+++G L  V + D 
Sbjct: 35  GYVPRIGVLGKTGVGKSALFNALFGHDVAEVSDVSACTRQPQQVLLEMQGDLSGVFLVDL 94

Query: 275 AGIRET 280
            G+ E+
Sbjct: 95  PGLGES 100


>gi|229817680|ref|ZP_04447962.1| hypothetical protein BIFANG_02951 [Bifidobacterium angulatum DSM
           20098]
 gi|229785469|gb|EEP21583.1| hypothetical protein BIFANG_02951 [Bifidobacterium angulatum DSM
           20098]
          Length = 334

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 200 KNDISSHISQGKLG-EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++D++   +  KL  E  R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +
Sbjct: 7   RSDMTDTPASAKLASEPYRSGF-VAVVGRPNVGKSTLVNALIGTQIAIASSRPETTRKAI 65

Query: 259 TIDLDLEGYLVKISDTAGI 277
              L  +   + + DT GI
Sbjct: 66  RGVLTTDNAQLVLVDTPGI 84


>gi|91788464|ref|YP_549416.1| GTP-binding protein, HSR1-like protein [Polaromonas sp. JS666]
 gi|91697689|gb|ABE44518.1| GTP-binding protein HflX [Polaromonas sp. JS666]
          Length = 386

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 39/171 (22%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDT 274
           RN + I ++G++NAGKS+LFNAL K   A   D    T D  T  L L      V +SDT
Sbjct: 192 RNSFTISLVGYTNAGKSTLFNALVKAR-AYAADQLFATLDTTTRQLYLGDAARSVSLSDT 250

Query: 275 AG-IRE-----------------------------TDDIVEK-EGIKRTFLEVENADL-- 301
            G IR+                               D +E+ E ++R   E+  AD+  
Sbjct: 251 VGFIRDLPHGLIDAFAATLQEAADADLLLHVVDGSNPDYLEQIEQVQRVLAEIGAADVPQ 310

Query: 302 ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGL 351
           IL+  ++++ ++ + P ++  +F     D +   +   D + +S+ TGEGL
Sbjct: 311 ILVFNKLDAVEKGNSPLSLRDMF--ELRDAFEGASRSVDRVFVSALTGEGL 359


>gi|315129875|gb|EFT85865.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus
           CGS03]
          Length = 366

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           IR    + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++  
Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDESSFMY- 215

Query: 271 ISDTAGI 277
             DT GI
Sbjct: 216 --DTPGI 220


>gi|295695440|ref|YP_003588678.1| GTP-binding protein Era [Bacillus tusciae DSM 2912]
 gi|295411042|gb|ADG05534.1| GTP-binding protein Era [Bacillus tusciae DSM 2912]
          Length = 300

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   ++G  N GKS+L N L    +AI++D P TTR+ +   L  E   V   DT G
Sbjct: 8   RSGFA-ALVGRPNVGKSTLLNRLIGTKIAIMSDKPQTTRNRIRGVLTRENGQVIFLDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           +      +     +     ++  DL+L + ++ SK
Sbjct: 67  VHRPKHRLGDYMNRLALATLQEVDLVLFVIDVTSK 101


>gi|241888775|ref|ZP_04776081.1| ribosome biogenesis GTPase YqeH [Gemella haemolysans ATCC 10379]
 gi|241864451|gb|EER68827.1| ribosome biogenesis GTPase YqeH [Gemella haemolysans ATCC 10379]
          Length = 372

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + I+G +N GKS+  N L       K+V   +  PGTT  ++ I LD       
Sbjct: 161 LRNGKDVYIVGATNVGKSTFINKLIELTTGDKNVITTSHFPGTTLGMIEIPLD---RATS 217

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           I DT GI    DI         +L+ ++  L++  KEI ++
Sbjct: 218 IYDTPGIILDYDIAH-------YLDAQSLKLVMPKKEIKAR 251


>gi|227486686|ref|ZP_03917002.1| HflX subfamily GTP-binding protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235274|gb|EEI85289.1| HflX subfamily GTP-binding protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 26/184 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAK----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           N + I ++G++NAGKS++ N + +    +      D+   T D  T  LD     V ++D
Sbjct: 187 NIFNISLVGYTNAGKSTILNGMMRLFGSEKYVYSDDLLFATLDTSTRRLDFSNTKVTLTD 246

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI-----SFPKNIDFIFIGTK 328
           T G  +       +    T  E++ AD++L++  I++   I     +  K++D I +  K
Sbjct: 247 TVGFIDNLSKELNDSFLTTLEEIKFADMLLIV--IDASHNIDGQLATIDKSLDEIELDGK 304

Query: 329 SDLY--------------STYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
             +Y              S Y  EY+ + IS+   E L  L N+I  ++  +++++   I
Sbjct: 305 QIIYVFNKMDKVEDVTATSLYKREYERIFISAKNDEDLHNLKNEIVKVIKEEYREVTMHI 364

Query: 374 PSHK 377
           P  K
Sbjct: 365 PFDK 368


>gi|49483844|ref|YP_041068.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282904178|ref|ZP_06312066.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906005|ref|ZP_06313860.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908916|ref|ZP_06316734.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|283958360|ref|ZP_06375811.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295428174|ref|ZP_06820806.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590860|ref|ZP_06949498.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49241973|emb|CAG40668.1| putative GTPase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282327180|gb|EFB57475.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331297|gb|EFB60811.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595796|gb|EFC00760.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790509|gb|EFC29326.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295128532|gb|EFG58166.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297575746|gb|EFH94462.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus MN8]
 gi|315195499|gb|EFU25886.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 366

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 25/153 (16%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           IR    + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++  
Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215

Query: 271 ISDTAGI------------RETDDIVEKEGIKRTFLEVENADLILL--LKEINSKKEISF 316
             DT GI            +E   I+ K+ IK+   ++  A  +    L  I+    +S 
Sbjct: 216 --DTPGIIQDHQMTHLVSEKELKIIMPKKEIKQRVYQLNEAQTLFFGGLARIDY---VSG 270

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
            K     F     +++ T TE+ + L  +  G+
Sbjct: 271 GKRPLICFFSNDLNIHRTKTEKANDLWRNQLGD 303


>gi|28210961|ref|NP_781905.1| translation initiation factor IF-2 [Clostridium tetani E88]
 gi|39931276|sp|Q895J8|IF2_CLOTE RecName: Full=Translation initiation factor IF-2
 gi|28203400|gb|AAO35842.1| bacterial protein translation initiation factor 2 [Clostridium
           tetani E88]
          Length = 685

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 71/140 (50%), Gaps = 4/140 (2%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTH--IRSFIEADLDFSEEEDV-QNFSSKEVLNDI 196
           EM+  ++++ +S  L   Y + I +L    + + +  ++DF   E + + F +  V  ++
Sbjct: 105 EMEDTITVKELSDRLKKTYAEVIKELMMMGVMAAVNQEIDFEAAEKLGEKFEAIVVQREV 164

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L+  +  +I + +    ++    + ++GH + GK+SL +A+ K++VA  ++  G T+ 
Sbjct: 165 DVLEESVEQYIEEEEEEGTVKRPPVVTVMGHVDHGKTSLLDAIRKEEVA-ASEAGGITQH 223

Query: 257 VLTIDLDLEGYLVKISDTAG 276
           +    + + G  +   DT G
Sbjct: 224 IGAYTITINGEKITFLDTPG 243


>gi|225387778|ref|ZP_03757542.1| hypothetical protein CLOSTASPAR_01548 [Clostridium asparagiforme
           DSM 15981]
 gi|225046112|gb|EEG56358.1| hypothetical protein CLOSTASPAR_01548 [Clostridium asparagiforme
           DSM 15981]
          Length = 303

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 8/90 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + +AI +D P TTR+ + T+  D  G ++ + DT GI + 
Sbjct: 12  VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFL-DTPGIHKA 70

Query: 281 DDIVEKEGI---KRTFLEVENADLILLLKE 307
            + + +  +   +RT  EV   D+IL L E
Sbjct: 71  KNKLGEYMVTVAERTLTEV---DVILWLVE 97


>gi|149916653|ref|ZP_01905155.1| GTP-binding protein [Plesiocystis pacifica SIR-1]
 gi|149822370|gb|EDM81759.1| GTP-binding protein [Plesiocystis pacifica SIR-1]
          Length = 465

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 211 KLGEIIRNGY----KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           + G+  R G     ++ ++G++NAGK+SL NAL + +++   D+P  T D  T  L   G
Sbjct: 226 RAGQRQREGRASCGRVALVGYTNAGKTSLMNALTQAELS-ARDMPFETLDTTTRSLTRHG 284

Query: 267 YLVKISDTAG 276
             V ISDT G
Sbjct: 285 GDVIISDTVG 294


>gi|167646573|ref|YP_001684236.1| GTP-binding proten HflX [Caulobacter sp. K31]
 gi|167349003|gb|ABZ71738.1| GTP-binding proten HflX [Caulobacter sp. K31]
          Length = 446

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 37/225 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN L    V +  D+   T D    ++ L +G    +SDT G    
Sbjct: 216 VALVGYTNAGKSTLFNRLTHATV-VAQDMLFATLDPTLRNVKLPDGRPAILSDTVGF--I 272

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------------- 324
            D+  +  E  + T  EV+ AD++L ++++ +    +  +++  +               
Sbjct: 273 SDLPHELVEAFRATLEEVQEADVVLHVRDVANPDTDAQARDVQVVLAELKVTAEDGKTII 332

Query: 325 -IGTKSDLYSTYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            +  K DL      E             +S+ TGEG  EL+ ++ +++ +     P ++ 
Sbjct: 333 EVWNKIDLVDGEAREILDGQARRLGASAVSAVTGEGCAELLKRVGTLIDDTP---PVAVR 389

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASVSLGK 418
              +    L+   R   + S +E+ + G+ +IA   RL + +LG+
Sbjct: 390 LAAKDGEALAWIYRNGRVESRDEEAEGGVRLIA---RLDAQALGR 431


>gi|88858905|ref|ZP_01133546.1| HflX, putative GTPase subunit of protease with nucleoside triP
           hydrolase domain [Pseudoalteromonas tunicata D2]
 gi|88819131|gb|EAR28945.1| HflX, putative GTPase subunit of protease with nucleoside triP
           hydrolase domain [Pseudoalteromonas tunicata D2]
          Length = 429

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 33/213 (15%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ +  IL   + ++    QG+          + ++G++NAGKS+LFN     DV     
Sbjct: 168 RDKIKTILKRLDKVAKQREQGRRARTRNEIPTVSLVGYTNAGKSTLFNRATASDVYAADQ 227

Query: 250 IPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLK 306
           +  T    L  ID+   G ++ ++DT G IR    D+V     K T +E   ADL L + 
Sbjct: 228 LFATLDPTLRKIDVADIGSVI-MADTVGFIRHLPHDLV--AAFKATLVETREADLQLHVI 284

Query: 307 EINSKKEISFPKNIDFI---------------FIGTKSDLYSTYTEEYDH---------L 342
           ++  ++     +NID +                I  K DL        D           
Sbjct: 285 DVADERR---QENIDQVNDVLHEIEADDVPQLLIYNKIDLVEELVPRIDRDDEGKPIRIW 341

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +S+ TG G E L+  I   L+ K  K    +P+
Sbjct: 342 LSAQTGVGCELLLQAISECLAEKMLKCRLRVPA 374


>gi|297171661|gb|ADI22655.1| GTPase [uncultured Gemmatimonadales bacterium HF0500_22O06]
          Length = 317

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E+ R GY + ++G  N GKS+L N L  + ++IVT    TT   +T  L +    +   D
Sbjct: 15  EVTRTGY-VTLVGRPNVGKSTLLNQLVGEHLSIVTPKAQTTWQRVTGILSVGTDQMIFLD 73

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           T G+ E  D++++  +      +  AD+ +LL +  +K +
Sbjct: 74  TPGLLEAKDMLQRAMLGAALEALAEADITILLIDSTTKPD 113


>gi|315645734|ref|ZP_07898858.1| ribosome biogenesis GTP-binding protein YsxC [Paenibacillus vortex
           V453]
 gi|315279212|gb|EFU42522.1| ribosome biogenesis GTP-binding protein YsxC [Paenibacillus vortex
           V453]
          Length = 214

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 11/121 (9%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGI 277
           +I + G SN GKSSL N + A+K++A  +  PG T+ +    ++ + YLV       A +
Sbjct: 25  EIALAGRSNVGKSSLINRMIARKNLARTSSTPGKTQQLNYYRVNDDLYLVDFPGYGYAKV 84

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKS 329
            +T      E I+R  L  E   L+LL+ ++    SK +IS  +     N     + TK+
Sbjct: 85  SKTQRAAFGEMIERYLLNREELKLVLLIVDMRHPPSKDDISMYEWLQHYNRPVCVVATKA 144

Query: 330 D 330
           D
Sbjct: 145 D 145


>gi|72382687|ref|YP_292042.1| GTP-binding protein Era [Prochlorococcus marinus str. NATL2A]
 gi|72002537|gb|AAZ58339.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Prochlorococcus marinus str. NATL2A]
          Length = 313

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 26/177 (14%)

Query: 212 LGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           LG++ +  +K   I ++G  N GKS+  N    + +AI + I  TTR+ L + L  E   
Sbjct: 3   LGDLSQEDFKSGFIALIGRPNVGKSTFINKFIGEKIAITSPIAQTTRNRLKVILTNEKSQ 62

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--I 320
           +   DT GI +   ++ +  ++     + + D +L++ E +          ++  +N  I
Sbjct: 63  IIFVDTPGIHKPHHLLGERLVQSAKRSIGDVDAVLVIFEASHSPGRGDAFILNLIRNLKI 122

Query: 321 DFIFIGTKSDL-----YSTYTEEYDHLI----------SSFTGEGLEELINKIKSIL 362
             I    K DL     +    +EY   +          S+ TG+G  ELI++I+  L
Sbjct: 123 PVIVALNKWDLLALSQFKERKKEYFEFLEGTNWPVFCCSALTGQGCNELISEIEETL 179


>gi|294677339|ref|YP_003577954.1| GTP-binding proten HflX [Rhodobacter capsulatus SB 1003]
 gi|294476159|gb|ADE85547.1| GTP-binding proten HflX [Rhodobacter capsulatus SB 1003]
          Length = 427

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 38/232 (16%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           + ++ LK  ++  +   +L    R       + ++G++NAGKSSLFN +   +V +  D+
Sbjct: 178 DQVIRLKRQLAKVVKTRELHRAARRKVPFPIVALVGYTNAGKSSLFNRMTGAEV-LAKDM 236

Query: 251 PGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEK--EGIKRTFLEVENADLILLLKE 307
              T D     L L  G  + +SDT G     D+  +     + T  EV  ADLIL +++
Sbjct: 237 LFATLDPTMRGLVLPSGRRIILSDTVGF--ISDLPHELVAAFRATLEEVLEADLILHVRD 294

Query: 308 INSKKE----------------------ISFPKNIDFIFIGTKSDLYSTYTEEYD-HLIS 344
           I+  +                       I     ID +    +  L +      D   +S
Sbjct: 295 ISHPETEEQAEDVGEILESLGVAEDVALIEVWNKIDALSEAVRQGLLAQDARRSDVQAVS 354

Query: 345 SFTGEGLEELINKIKSILSNKFKK----LPFSIPSHKRHLYHLSQTVRYLEM 392
           + +GEG+  L+  I++ L   + +    LPF+  + K H +  +Q V   E+
Sbjct: 355 ALSGEGIGALVAAIEARLGEAWIEEDLDLPFT--AGKEHAWLHAQGVIRTEL 404


>gi|290960557|ref|YP_003491739.1| GTP-binding protein [Streptomyces scabiei 87.22]
 gi|260650083|emb|CBG73199.1| GTP-binding protein [Streptomyces scabiei 87.22]
          Length = 320

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 16/130 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   + G  NAGKS+L NAL  + VAI  D P TTR  +   +      + + DT G
Sbjct: 20  RAGFACFV-GRPNAGKSTLTNALVGQKVAITADQPQTTRHTVRGIVHRPDAQLILVDTPG 78

Query: 277 IRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIF 324
           + +   ++ +   + ++ T+ EV   D+I      N K         KE++  K    I 
Sbjct: 79  LHKPRTLLGQRLNDVVRTTWAEV---DVIGFCLPANEKLGPGDRFIAKELASIKKTPKIA 135

Query: 325 IGTKSDLYST 334
           I TK+DL  +
Sbjct: 136 IVTKTDLVES 145


>gi|253991436|ref|YP_003042792.1| hypothetical protein PAU_03963 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782886|emb|CAQ86051.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 250

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G + AGKSSL NAL + +V  V+DI   TRDVL + L    + + + D  G+ E++   
Sbjct: 1   MGKTGAGKSSLCNALFQGEVTPVSDIDACTRDVLRLRLRSGEHSLILVDLPGVGESEQRD 60

Query: 285 EK-EGIKRTFLEVENADLILLL 305
           E+ E + R  L     DLIL +
Sbjct: 61  EEYEYLYRKVL--PELDLILWI 80


>gi|257425721|ref|ZP_05602145.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428382|ref|ZP_05604780.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431019|ref|ZP_05607399.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433707|ref|ZP_05610065.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436621|ref|ZP_05612665.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus M876]
 gi|282911234|ref|ZP_06319036.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914403|ref|ZP_06322189.1| GTP-binding protein [Staphylococcus aureus subsp. aureus M899]
 gi|282924697|ref|ZP_06332365.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus C101]
 gi|293503477|ref|ZP_06667324.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510494|ref|ZP_06669200.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus M809]
 gi|293531034|ref|ZP_06671716.1| GTP-binding protein [Staphylococcus aureus subsp. aureus M1015]
 gi|257271415|gb|EEV03561.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275223|gb|EEV06710.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278449|gb|EEV09085.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281800|gb|EEV11937.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283972|gb|EEV14095.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313532|gb|EFB43927.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus C101]
 gi|282321584|gb|EFB51909.1| GTP-binding protein [Staphylococcus aureus subsp. aureus M899]
 gi|282324929|gb|EFB55239.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|290920302|gb|EFD97368.1| GTP-binding protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291095143|gb|EFE25408.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466858|gb|EFF09378.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus M809]
 gi|312437935|gb|ADQ77006.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus TCH60]
          Length = 366

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 25/153 (16%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           IR    + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++  
Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215

Query: 271 ISDTAGI------------RETDDIVEKEGIKRTFLEVENADLILL--LKEINSKKEISF 316
             DT GI            +E   I+ K+ IK+   ++  A  +    L  I+    +S 
Sbjct: 216 --DTPGIIQDHQMTHLVSEKELKIIMPKKEIKQRVYQLNEAQTLFFGGLARIDY---VSG 270

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
            K     F     +++ T TE+ + L  +  G+
Sbjct: 271 GKRPLICFFSNDLNIHRTKTEKANDLWRNQLGD 303


>gi|225850021|ref|YP_002730255.1| ferrous iron transport protein B [Persephonella marina EX-H1]
 gi|225645364|gb|ACO03550.1| ferrous iron transport protein B [Persephonella marina EX-H1]
          Length = 721

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ + G+ N GK++L NALA  ++  V + PG T +     ++ +GY + + D  G    
Sbjct: 7   KVAVAGNPNTGKTTLINALAGTNLH-VGNWPGVTVEKKEAIIEYKGYKIHLVDLPGTYSL 65

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
            + V +E I   FL  E  DL++
Sbjct: 66  SNDVAEEKIAIDFLVKEKPDLVI 88


>gi|82751199|ref|YP_416940.1| GTP-binding protein YqeH [Staphylococcus aureus RF122]
 gi|82656730|emb|CAI81158.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 366

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           IR    + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++  
Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEDSVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215

Query: 271 ISDTAGI 277
             DT GI
Sbjct: 216 --DTPGI 220


>gi|85000519|ref|XP_954978.1| ORF1-related protein [Theileria annulata strain Ankara]
 gi|65303124|emb|CAI75502.1| ORF1-related protein, putative [Theileria annulata]
          Length = 651

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 23/103 (22%)

Query: 222 IVILGHSNAGKSSLFNA-LAKKDVA------IVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G SN GKSSLFN+ LA+   A      IV++ PGTTR+       L+G  + + DT
Sbjct: 3   VSLIGRSNVGKSSLFNSILAQAGKASNILKSIVSEKPGTTRNSKQAQFYLKGNKITLVDT 62

Query: 275 AGI---------RETDD---IVEKEGIKRTFLEVENADLILLL 305
            G          RE      I+EKE    T   VE+++LI  +
Sbjct: 63  GGFEAFLTKTPKREDSSIFKIIEKE----THKAVESSNLIFFV 101


>gi|304380806|ref|ZP_07363473.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|304340682|gb|EFM06615.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
          Length = 366

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           IR    + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++  
Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215

Query: 271 ISDTAGI 277
             DT GI
Sbjct: 216 --DTPGI 220


>gi|297156395|gb|ADI06107.1| ribosome-associated GTPase [Streptomyces bingchenggensis BCW-1]
          Length = 365

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 15/95 (15%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNAL---AKKDVAIVTDIPG------TTRDVLTIDL 262
           LG ++ +G   V+LG S AGKS+L NAL   A + V  V D  G      TTRD+L   L
Sbjct: 192 LGAVLSSGTS-VLLGQSGAGKSTLANALLGEAAQQVYEVRDSDGKGRHTTTTRDLLR--L 248

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
              G L+   DT G+R        EG+ + F E+E
Sbjct: 249 PWGGVLI---DTPGVRGVGLWDAGEGVAQAFSEIE 280


>gi|269468141|gb|EEZ79848.1| cell division checkpoint GTPase YihA [uncultured SUP05 cluster
           bacterium]
          Length = 199

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            GY+++  G SNAGKSS  N L  +K +A V+  PG T+ ++  +LD    LV +
Sbjct: 24  QGYEVIFAGRSNAGKSSAINTLTLQKKLAKVSRTPGRTQHLVFFELDQNRRLVDL 78


>gi|255319822|ref|ZP_05361027.1| GTPase EngB [Acinetobacter radioresistens SK82]
 gi|262380354|ref|ZP_06073508.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           radioresistens SH164]
 gi|255303141|gb|EET82353.1| GTPase EngB [Acinetobacter radioresistens SK82]
 gi|262297800|gb|EEY85715.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           radioresistens SH164]
          Length = 278

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 18/101 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR----------DVLTIDLDLEGY 267
           GY+I   G SNAGKSS  NAL  +K +A  +  PG T+          D   +DL   GY
Sbjct: 62  GYEIAFAGRSNAGKSSAINALTNQKQLARASKKPGRTQMINFFSLGNPDQRLVDLPGYGY 121

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
                  A + ET  IV ++ ++   +  E+   ++LL +I
Sbjct: 122 -------AAVPETMKIVWQKELENYLIHRESLQGLVLLMDI 155


>gi|237740467|ref|ZP_04570948.1| GTP binding protein [Fusobacterium sp. 2_1_31]
 gi|229422484|gb|EEO37531.1| GTP binding protein [Fusobacterium sp. 2_1_31]
          Length = 297

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +  + VAIV+D  GTTRD +   L+++       DT GI +  
Sbjct: 6   IAIVGRPNVGKSTLINKMVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ +         +++ D+IL L
Sbjct: 66  HLLGEYMTNIAINILKDVDVILFL 89


>gi|194367174|ref|YP_002029784.1| ribosome biogenesis GTP-binding protein YsxC [Stenotrophomonas
           maltophilia R551-3]
 gi|194349978|gb|ACF53101.1| GTP-binding protein HSR1-related [Stenotrophomonas maltophilia
           R551-3]
          Length = 202

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 206 HISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLD 263
           H+S   +G++  + G ++   G SNAGKSS  NAL +++ +A V+  PG T+ ++   + 
Sbjct: 13  HLSAHNMGQLPPDEGAEVAFAGRSNAGKSSALNALTRQNSLARVSKTPGRTQQLVFFQVT 72

Query: 264 LEGYLVKI 271
            E +LV +
Sbjct: 73  PEAHLVDL 80


>gi|157963353|ref|YP_001503387.1| small GTP-binding protein [Shewanella pealeana ATCC 700345]
 gi|157848353|gb|ABV88852.1| small GTP-binding protein [Shewanella pealeana ATCC 700345]
          Length = 431

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 40/188 (21%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFN L   DV     +  T    L   L+L    V ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNGLTTSDVYAADQLFATLDPTLR-KLELPDGDVILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKNI 320
             D+V     K T  E   ADL+L                   +LKEI++   I  P+  
Sbjct: 259 PHDLV--AAFKATLQETRQADLLLHVVDSADEKMADNFEQVQKVLKEIDA---IDIPQ-- 311

Query: 321 DFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
             + +  K DL        D+          +S+   +GLE + + I  ++    ++L  
Sbjct: 312 --LIVCNKIDLLDEVKPRIDYDDEGTPIRVWVSAQQQKGLELVEDAINQLVGKAIQELTL 369

Query: 372 SIPSHKRH 379
            IP+   H
Sbjct: 370 QIPASAGH 377


>gi|57239269|ref|YP_180405.1| GTP-binding protein Era [Ehrlichia ruminantium str. Welgevonden]
 gi|58579232|ref|YP_197444.1| GTP-binding protein Era [Ehrlichia ruminantium str. Welgevonden]
 gi|81819234|sp|Q5HAY9|ERA_EHRRW RecName: Full=GTPase Era
 gi|57161348|emb|CAH58271.1| putative GTP-binding protein ERA [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417858|emb|CAI27062.1| GTP-binding protein Era homolog [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 296

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 21/154 (13%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G +NAGKS+L N L  + VA VT    TTR  +    + E   +   DT GI      
Sbjct: 13  IVGATNAGKSTLVNVLVGQKVAAVTPKVQTTRVRMHAVSNHENVQLIFIDTPGIFSPKTK 72

Query: 284 VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSD----- 330
           +EK  +K  ++ ++  + +++L ++ +      KK I   K  N++ I +  K D     
Sbjct: 73  LEKFLVKHAWMSLKGIENVIVLVDVKNYLNQHLKKIIDRIKHSNLNAILVLNKIDIVHQS 132

Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELIN 356
                   +YS Y       IS+  G G+++L++
Sbjct: 133 IVSEVIEYMYSLYKFSKAFTISALYGIGIDKLVD 166


>gi|302333273|gb|ADL23466.1| GTPase family protein [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 366

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           IR    + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++  
Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215

Query: 271 ISDTAGI 277
             DT GI
Sbjct: 216 --DTPGI 220


>gi|258424024|ref|ZP_05686906.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9635]
 gi|257845645|gb|EEV69677.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9635]
          Length = 366

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           IR    + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++  
Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215

Query: 271 ISDTAGI 277
             DT GI
Sbjct: 216 --DTPGI 220


>gi|207743440|ref|YP_002259832.1| gtp-binding protein enga (partial sequence n terminus) [Ralstonia
           solanacearum IPO1609]
 gi|206594837|emb|CAQ61764.1| probable gtp-binding protein enga (partial sequence n terminus)
           [Ralstonia solanacearum IPO1609]
          Length = 122

 Score = 42.7 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGF---- 60

Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305
           + V KEGI     K+T   V  AD+++ +
Sbjct: 61  EPVAKEGIVAEMAKQTRQAVVEADVVIFI 89


>gi|157364142|ref|YP_001470909.1| GTP-binding protein Era [Thermotoga lettingae TMO]
 gi|189037681|sp|A8F6R1|ERA_THELT RecName: Full=GTPase Era
 gi|157314746|gb|ABV33845.1| GTP-binding protein Era [Thermotoga lettingae TMO]
          Length = 296

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 30/192 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKSSL N+   + V IV++ P TTR+ +        + +  +DT GI +  
Sbjct: 6   VTLVGRPNAGKSSLINSFIGRKVLIVSEKPQTTRNKIRCIYTDSYHQIIFTDTPGIHKPV 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN----------------SKKE-------ISFPK 318
             + +  +K     ++  DL+L + +                  SK E       I   K
Sbjct: 66  HRLGEFMVKVAIQAMKGVDLVLFVVDATKGFGEPEKRICDLVKLSKTETFLVINKIDLAK 125

Query: 319 NIDFI--FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           N +F+   I ++ D +S          S    EG+EEL+  IK+ +       P ++   
Sbjct: 126 NYEFLAKTIVSECDCFSKV-----FFTSVVKNEGIEELLQAIKNCMPEGPMYFPENMLID 180

Query: 377 KRHLYHLSQTVR 388
           +   + +++ +R
Sbjct: 181 RPISFQIAEIIR 192


>gi|326802551|ref|YP_004320370.1| GTP-binding protein engB [Sphingobacterium sp. 21]
 gi|326553315|gb|ADZ81700.1| GTP-binding protein engB [Sphingobacterium sp. 21]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 11/127 (8%)

Query: 225 LGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRETD 281
           +G SN GKSSL NAL + K +A  +  PG T+ +    ++ E +LV +     A   +T+
Sbjct: 35  IGRSNVGKSSLINALTQHKGLAKTSQTPGKTQLINHFLVNKEWFLVDLPGYGYAKTSKTN 94

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISF-----PKNIDFIFIGTKSDLYS 333
               ++ IK+     EN   + +L   +    K ++ F      K I FI I TK+D  S
Sbjct: 95  RSEWEKFIKKYLFNRENLQCVFVLIDSRLTPQKNDLDFCCLLGEKGIPFILIFTKADKQS 154

Query: 334 TYTEEYD 340
               E++
Sbjct: 155 KIKSEHN 161


>gi|306825208|ref|ZP_07458550.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304432644|gb|EFM35618.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 301

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 12/84 (14%)

Query: 201 NDISSHISQGKLGEIIRNGYKI-----VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            D +  +   K+      G KI     +I+G  NAGKS+L N LA K +A+V + PG T+
Sbjct: 116 TDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTK 175

Query: 256 --DVLTIDLDLEGYLVKISDTAGI 277
               L  + DLE     I DT GI
Sbjct: 176 GQQWLKTNKDLE-----ILDTPGI 194


>gi|282165329|ref|YP_003357714.1| GTP-binding protein [Methanocella paludicola SANAE]
 gi|282157643|dbj|BAI62731.1| GTP-binding protein [Methanocella paludicola SANAE]
          Length = 420

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 82/193 (42%), Gaps = 27/193 (13%)

Query: 218 NGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
            G+ +V L G++NAGKS+L NAL  + V +  D   TT    T  L +      ++DT G
Sbjct: 188 KGFDLVALAGYTNAGKSTLMNALVGETV-VAKDQLFTTLVPTTRSLQIGQRKTLLTDTVG 246

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------------NIDFI 323
             +       E  + T  E+  AD+I+L+ +++   E    K              +  I
Sbjct: 247 FIKNLPHFMVEAFRSTLEEIYLADVIILVVDVSEPPEALVDKLVTCHDTMWDEIGPVPVI 306

Query: 324 FIGTKSDLYS-----------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               KSDL +            +   +  +IS+ TGEGL+EL  KI   L  K+      
Sbjct: 307 TALNKSDLITEEELEERKQAIVHLAPHPVVISARTGEGLDELKQKIGKYLP-KWTSSEVV 365

Query: 373 IPSHKRHLYHLSQ 385
           +P     L  LSQ
Sbjct: 366 LPRTVEGLSMLSQ 378


>gi|193213958|ref|YP_001995157.1| GTP-binding proten HflX [Chloroherpeton thalassium ATCC 35110]
 gi|193087435|gb|ACF12710.1| GTP-binding proten HflX [Chloroherpeton thalassium ATCC 35110]
          Length = 432

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 6/116 (5%)

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           +   I  LK  +  H  Q +     R+   KI ++G++NAGKS+L NAL  K  A   D 
Sbjct: 178 IWRRISTLKQKLKEHSRQRETRTSWRDSITKIALVGYTNAGKSTLMNALCPKANAYSEDR 237

Query: 251 PGTTRDVLTIDLDL-EGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL 303
              T D  T  L L +     +SDT G IR+   ++V  E  K T  EV  AD++L
Sbjct: 238 LFATLDTTTRRLHLKQNKQAILSDTVGFIRKLPHNLV--ESFKSTLEEVREADILL 291


>gi|145590303|ref|YP_001152305.1| small GTP-binding protein [Pyrobaculum arsenaticum DSM 13514]
 gi|145282071|gb|ABP49653.1| small GTP-binding protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 381

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++V+ G+++AGK++LFN L  ++  IV   P  T +  +  LD+ G  V ++DT G  + 
Sbjct: 187 EVVLTGYTSAGKTTLFNRLVSEN-KIVDGRPFATLETYSRALDIWGKRVVLTDTIGFIDD 245

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
              V  E    T  E+ +AD ILL+
Sbjct: 246 LPPVLIESFHSTLQEIIDADRILLV 270


>gi|119961109|ref|YP_947366.1| GTP-binding protein [Arthrobacter aurescens TC1]
 gi|119947968|gb|ABM06879.1| putative GTP-binding protein [Arthrobacter aurescens TC1]
          Length = 629

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 41/183 (22%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L    V    A+   +  T R   T D    G    ++DT G 
Sbjct: 410 VAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVRKAQTPD----GIGYTLADTVGF 465

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPK 318
             +      E  + T  EV +ADLIL                   +  E++++K      
Sbjct: 466 VRSLPTQLIEAFRSTLEEVADADLILHVVDASHPDPEGQIAAVRAVFTEVDARK------ 519

Query: 319 NIDFIFIGTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            +  I +  K D+   +        E    ++S+ TG+G+ EL+  I   +     +L  
Sbjct: 520 -VPEIIVLNKVDVADPFVVERLKQKEPRHAVVSTRTGQGIAELLEDISRSIPRPGVRLEL 578

Query: 372 SIP 374
            IP
Sbjct: 579 LIP 581


>gi|220930466|ref|YP_002507375.1| small GTP-binding protein [Clostridium cellulolyticum H10]
 gi|220000794|gb|ACL77395.1| small GTP-binding protein [Clostridium cellulolyticum H10]
          Length = 396

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 5/102 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL N +  +D+A+V++I GTT D +   ++L     V   DTAG
Sbjct: 10  NRLHIALFGRRNSGKSSLINTITGQDIALVSEIAGTTTDPVYKAMELHPIGPVMFIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
             +   + E   I++T   ++  D+ ++   I S+ E+S  K
Sbjct: 70  FDDVGTLGELR-IEKTRKVIDKTDIAIV---IFSETELSMEK 107


>gi|20807571|ref|NP_622742.1| thiophene degradation protein F [Thermoanaerobacter tengcongensis
          MB4]
 gi|20516108|gb|AAM24346.1| thiophene degradation protein F [Thermoanaerobacter tengcongensis
          MB4]
          Length = 93

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 4  EKETIFAVSTGALPSAISIIRLSGPSCF----QVCEFICKKKKPFPRKASLRYFFGLD-- 57
          E +TI A+ST    + I I+R+SG        ++  F  KK     +  +L Y   +D  
Sbjct: 2  EFDTIAAISTSPGEAGIGIVRMSGDGALDIISRIFRFYKKKDVKNVKTHTLHYGHIVDPD 61

Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGG 88
           G + D+ L+ +   P ++T ED  E + HGG
Sbjct: 62 TGEVYDEVLVSIMKKPNTYTREDIVEINCHGG 93


>gi|49474067|ref|YP_032109.1| GTP-binding protein Era [Bartonella quintana str. Toulouse]
 gi|49239571|emb|CAF25928.1| GTP-binding protein era homolog [Bartonella quintana str. Toulouse]
          Length = 301

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 26/179 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +V++G  NAGKS+L N L    V+IVT    TTR ++   +  +   + + DT G
Sbjct: 8   RSGF-VVLIGMPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIHDNTQIVLIDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNI--DFIFIGTK 328
           +      +E+  +   +   ++AD++L+L + +S         +   +NI  D I +  K
Sbjct: 67  VFRPHKRLERAMVSAAWGGAKSADVLLVLIDAHSGLSDEVCTMLDIVENIKQDKILVLNK 126

Query: 329 SD---------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            D         L +   E    L    IS+ +G G ++L++     LS   ++ P+  P
Sbjct: 127 IDTVAKLSLLALTAQINERVKFLQTFMISALSGSGCKDLLHA----LSTMMQRGPWYYP 181


>gi|266621740|ref|ZP_06114675.1| GTP-binding protein Era [Clostridium hathewayi DSM 13479]
 gi|288866563|gb|EFC98861.1| GTP-binding protein Era [Clostridium hathewayi DSM 13479]
          Length = 280

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 5/94 (5%)

Query: 218 NGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISD 273
           N YK   + ++G  N GKS+L N L  + +AI +D P TTR+ + T+  D  G ++ + D
Sbjct: 3   NNYKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFL-D 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           T GI +  + + +  +      ++  D++L L E
Sbjct: 62  TPGIHKAKNKLGEYMVSVAEHTLKEVDVVLWLVE 95


>gi|237730251|ref|ZP_04560732.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226905790|gb|EEH91708.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 287

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N +  L   +S  I Q ++ ++      I I+G + AGKSSL NAL   +V+ V+DI   
Sbjct: 12  NSLAGLPQWVSERILQ-QINQLTHYEPVIGIMGKTGAGKSSLCNALFGGEVSPVSDITAC 70

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           TR+ L   L +    + + D  G+ E+ +  + E +     ++   DL+L L
Sbjct: 71  TREPLRFHLQVGKRYMTLVDLPGVGES-NTRDAEYVALYRKQLPQLDLVLWL 121


>gi|194335605|ref|YP_002017399.1| GTP-binding protein Era [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308082|gb|ACF42782.1| GTP-binding protein Era [Pelodictyon phaeoclathratiforme BU-1]
          Length = 306

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           +I+G  NAGKS+L N L    ++IVT  P TTR  +T     E   +   DT GI +   
Sbjct: 12  IIIGPPNAGKSTLLNELLDYKLSIVTPKPQTTRKKITGIYHNEKCQIIFLDTPGIMKPQQ 71

Query: 283 IVEKE--GIKRTFLEVENADLILLLKEINSKKE 313
            + +   G+ R  L  ++AD+++ L   + KK+
Sbjct: 72  KLHESMLGVIRDTL--KDADVVIALLPFSGKKD 102


>gi|283470875|emb|CAQ50086.1| GTPase family protein [Staphylococcus aureus subsp. aureus ST398]
          Length = 366

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           IR    + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++  
Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215

Query: 271 ISDTAGI 277
             DT GI
Sbjct: 216 --DTPGI 220


>gi|282919372|ref|ZP_06327107.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317182|gb|EFB47556.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus C427]
          Length = 366

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 25/153 (16%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           IR    + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++  
Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215

Query: 271 ISDTAGI------------RETDDIVEKEGIKRTFLEVENADLILL--LKEINSKKEISF 316
             DT GI            +E   I+ K+ IK+   ++  A  +    L  I+    +S 
Sbjct: 216 --DTPGIIQDHQMTHLVSEKELKIIMPKKEIKQRVYQLNEAQTLFFGGLARIDY---VSG 270

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
            K     F     +++ T TE+ + L  +  G+
Sbjct: 271 GKRPLICFFSNDLNIHRTKTEKANDLWRNQLGD 303


>gi|261402862|ref|YP_003247086.1| ferrous iron transport protein B [Methanocaldococcus vulcanius M7]
 gi|261369855|gb|ACX72604.1| ferrous iron transport protein B [Methanocaldococcus vulcanius M7]
          Length = 677

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS++FNAL  ++V I  +  G T +    +++ +G   KI D  G+  
Sbjct: 3   YEIALIGNPNVGKSTIFNALTGENVYI-GNWAGVTVEKKVGEMEYDGKKFKIVDLPGVYS 61

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E + R +L  EN DL++
Sbjct: 62  LTANSIDEIVARDYLINENPDLVV 85


>gi|21283277|ref|NP_646365.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus MW2]
 gi|49486431|ref|YP_043652.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651989|ref|YP_186493.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus COL]
 gi|87160501|ref|YP_494251.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195406|ref|YP_500210.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151221711|ref|YP_001332533.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509825|ref|YP_001575484.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141132|ref|ZP_03565625.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258450575|ref|ZP_05698637.1| GTP-binding protein YqeH [Staphylococcus aureus A5948]
 gi|262048596|ref|ZP_06021479.1| hypothetical protein SAD30_0992 [Staphylococcus aureus D30]
 gi|262051255|ref|ZP_06023479.1| hypothetical protein SA930_1686 [Staphylococcus aureus 930918-3]
 gi|282916867|ref|ZP_06324625.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus D139]
 gi|282920145|ref|ZP_06327870.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9765]
 gi|283770672|ref|ZP_06343564.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus H19]
 gi|284024655|ref|ZP_06379053.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus 132]
 gi|294848627|ref|ZP_06789373.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9754]
 gi|297207684|ref|ZP_06924119.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300911765|ref|ZP_07129208.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|21204717|dbj|BAB95413.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244874|emb|CAG43335.1| putative GTPase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57286175|gb|AAW38269.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
           COL]
 gi|87126475|gb|ABD20989.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202964|gb|ABD30774.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374511|dbj|BAF67771.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368634|gb|ABX29605.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257861733|gb|EEV84532.1| GTP-binding protein YqeH [Staphylococcus aureus A5948]
 gi|259160892|gb|EEW45912.1| hypothetical protein SA930_1686 [Staphylococcus aureus 930918-3]
 gi|259163243|gb|EEW47802.1| hypothetical protein SAD30_0992 [Staphylococcus aureus D30]
 gi|282319354|gb|EFB49706.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus D139]
 gi|282594493|gb|EFB99478.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9765]
 gi|283460819|gb|EFC07909.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus H19]
 gi|294824653|gb|EFG41076.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9754]
 gi|296887701|gb|EFH26599.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|298694878|gb|ADI98100.1| GTP-binding protein [Staphylococcus aureus subsp. aureus ED133]
 gi|300886011|gb|EFK81213.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302751426|gb|ADL65603.1| GTPase family protein [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|315198706|gb|EFU29034.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140517|gb|EFW32371.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144055|gb|EFW35824.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323438562|gb|EGA96309.1| GTP-binding protein YqeH [Staphylococcus aureus O11]
 gi|323442801|gb|EGB00426.1| GTP-binding protein YqeH [Staphylococcus aureus O46]
 gi|329314272|gb|AEB88685.1| GTP-binding protein [Staphylococcus aureus subsp. aureus T0131]
 gi|329728433|gb|EGG64870.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733209|gb|EGG69546.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 366

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           IR    + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++  
Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215

Query: 271 ISDTAGI 277
             DT GI
Sbjct: 216 --DTPGI 220


>gi|311103379|ref|YP_003976232.1| GTPase [Achromobacter xylosoxidans A8]
 gi|310758068|gb|ADP13517.1| GTPase family protein 1 [Achromobacter xylosoxidans A8]
          Length = 462

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGIR 278
           +I ++GH+N GK+SL   L +      V D PGTTR V    L LEG  V +  DT G+ 
Sbjct: 7   RIALVGHTNTGKTSLLRTLTRDTRFGEVADSPGTTRHVEGARLRLEGRAVLEWFDTPGME 66

Query: 279 ETDDIVE 285
           ++  ++E
Sbjct: 67  DSISLLE 73


>gi|304384686|ref|ZP_07367032.1| ribosome biogenesis GTPase YqeH [Pediococcus acidilactici DSM
           20284]
 gi|304328880|gb|EFL96100.1| ribosome biogenesis GTPase YqeH [Pediococcus acidilactici DSM
           20284]
          Length = 369

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 8/77 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R+G  + ++G +N GKS+L N+L       KDV   +  PGTT D + I  D     
Sbjct: 160 EQLRDGRDVYVVGVTNVGKSTLINSLIALRNGIKDVITTSRFPGTTLDRIEIPFDDHS-- 217

Query: 269 VKISDTAGIRETDDIVE 285
            K+ DT GI   D +  
Sbjct: 218 -KMIDTPGIVHNDQMAH 233


>gi|300919536|ref|ZP_07136034.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300413430|gb|EFJ96740.1| conserved hypothetical protein [Escherichia coli MS 115-1]
          Length = 287

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-- 279
           I I+G S AGKSSL NAL   +V+ V+D+   TR+ L   L +    + + D  G+ E  
Sbjct: 39  IGIMGKSGAGKSSLCNALFASEVSPVSDVAACTREPLRFRLQVGDCYMTLMDLPGVGESG 98

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
           T D  E   + R   ++   DL+L L
Sbjct: 99  TRD-TEYAALYRE--QLSRLDLVLWL 121


>gi|296445792|ref|ZP_06887744.1| GTP-binding proten HflX [Methylosinus trichosporium OB3b]
 gi|296256620|gb|EFH03695.1| GTP-binding proten HflX [Methylosinus trichosporium OB3b]
          Length = 462

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 31/184 (16%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y +V L G++NAGKS+LFN L K  V +  D+   T D     + L  G  V +SDT G 
Sbjct: 217 YPVVALVGYTNAGKSTLFNRLTKAGV-LAEDMLFATLDPTLRQIRLPHGAKVLLSDTVGF 275

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTY 335
                 +     + T  EV  AD++L +++++ +   +  ++++ I   +G   +  +  
Sbjct: 276 ISDLPTMLITAFRATLEEVMLADVVLHVRDVSHEDWEAQAEDVEAILAELGLSGEAGARI 335

Query: 336 TEEYDH--------------------------LISSFTGEGLEELINKIKSILSNKFKKL 369
            E ++                           L+S+ TGEGLE L+ +I+  L+    +L
Sbjct: 336 LEVWNKIDALDPERLAALAVAAESAQGRERPSLVSALTGEGLEALLERIEQRLAEGRVEL 395

Query: 370 PFSI 373
             ++
Sbjct: 396 EIAL 399


>gi|119386828|ref|YP_917883.1| small GTP-binding protein [Paracoccus denitrificans PD1222]
 gi|119377423|gb|ABL72187.1| GTP-binding protein HflX [Paracoccus denitrificans PD1222]
          Length = 435

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 30/172 (17%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGI 277
           Y IV L G++NAGKS+LFN L   +V +  D    T D     L L  G  V +SDT G 
Sbjct: 210 YPIVALVGYTNAGKSTLFNRLTGAEV-LAQDQLFATLDPTMRQLTLPGGRRVILSDTVGF 268

Query: 278 RETDDIVEK--EGIKRTFLEVENADLILLLKEINSKK-------------EISFPKNIDF 322
               D+  +     + T  EV  ADLIL +++I+  +              +   +++  
Sbjct: 269 --ISDLPHELVAAFRATLEEVLAADLILHVRDISHPETEEQAGDVGEILDSLGVEEDVPL 326

Query: 323 IFIGTKSDLYSTYT----EEYD------HLISSFTGEGLEELINKIKSILSN 364
           I +  K D  S  T    +  D        IS+ +GEGL+ L+  I++ L+ 
Sbjct: 327 IEVWNKIDALSPETRAALQRTDARTQGVQAISALSGEGLDTLLAAIEARLAE 378


>gi|134291629|ref|YP_001115398.1| GTP-binding protein, HSR1-related [Burkholderia vietnamiensis G4]
 gi|134134818|gb|ABO59143.1| GTP-binding protein, HSR1-related protein [Burkholderia
           vietnamiensis G4]
          Length = 513

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 10/84 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +++ G  NAGKS+L N+L  ++VA V D+P TT +V   D D  G++  + DT GI    
Sbjct: 43  VMLFGAYNAGKSTLINSLVGREVAKVGDVP-TTDEVHVHDWD--GHV--LLDTPGINAP- 96

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +E E I  +  ++E  DLI+ +
Sbjct: 97  --IEHEAI--SLAQLERTDLIVFV 116


>gi|222153078|ref|YP_002562255.1| ribosomal biogenesis GTPase [Streptococcus uberis 0140J]
 gi|222113891|emb|CAR42061.1| putative GTPase protein [Streptococcus uberis 0140J]
          Length = 284

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 7/65 (10%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKIS 272
           I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I 
Sbjct: 117 IQKQSLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----IL 171

Query: 273 DTAGI 277
           DT GI
Sbjct: 172 DTPGI 176


>gi|126726836|ref|ZP_01742675.1| Putative GTP-binding protein [Rhodobacterales bacterium HTCC2150]
 gi|126703794|gb|EBA02888.1| Putative GTP-binding protein [Rhodobacterales bacterium HTCC2150]
          Length = 390

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 109/271 (40%), Gaps = 37/271 (13%)

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND-ILFLKND 202
           ++ M  +S + + L   W    TH+              + Q  S +  L++ I+ ++  
Sbjct: 94  QVEMAALSYQKTRLVRAW----THLERQRGGLGFVGGPGETQIESDRRALDEAIIRIRRQ 149

Query: 203 ISSHISQGKLGEIIRNG--YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           +   +   +L    R    Y +V L G++NAGKS+ FN L    V    D+   T D   
Sbjct: 150 LEKTVKTRELHRAARKKVPYPVVALVGYTNAGKSTFFNHLTGAKV-FAKDMLFATLDPTM 208

Query: 260 IDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
             ++L  G  V +SDT G             + T  +  +ADLIL +++I   +  S   
Sbjct: 209 RAVNLPNGLDVILSDTVGFISDLPTELVAAFRATLEDALSADLILHVRDIAHPETESQAG 268

Query: 319 NIDFIF-------------IGTKSDL--------YSTYTEEYDHL--ISSFTGEGLEELI 355
           N+  I              I  K+DL         +   E  + +  +SS TG+G+E L+
Sbjct: 269 NVRTILSSLGIGHETPQIEIWNKTDLLNEEDAGRVAALAERKEDVFGVSSITGDGMEVLL 328

Query: 356 NKIKSIL----SNKFKKLPFSIPSHKRHLYH 382
             IK+ L    S     LPFS    +  L+ 
Sbjct: 329 AAIKAKLDDERSTDILSLPFSAGQKRAWLFQ 359


>gi|319407032|emb|CBI80669.1| GTP-binding protein Era [Bartonella sp. 1-1C]
          Length = 300

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 22/168 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++   +  +   + + DT G
Sbjct: 8   RSGF-VALIGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIYDKTQIILIDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTK 328
           +      +E+  +   +   +NAD++L+L         E+++  +I      D I +  K
Sbjct: 67  VFRPHKRLERAMVSAAWGGAKNADILLVLIDAQSGLSDEVDAMLDILKSIEQDKILVLNK 126

Query: 329 SD---------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILS 363
            D         L +   E  + L    IS+  G G ++L++ + +I+ 
Sbjct: 127 IDTVVKSSLLALTAKVNERVNFLQTFMISALNGSGCKDLLHYLSTIMQ 174


>gi|295103343|emb|CBL00887.1| GTPases [Faecalibacterium prausnitzii SL3/3]
          Length = 214

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 27/176 (15%)

Query: 222 IVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G++N GKSSL NAL     A+ D+   T  P + + VL       G  V + DT G
Sbjct: 4   VSLVGYTNVGKSSLMNALCGPSVAEADMLFATLDPTSRKLVLP-----SGMAVLLVDTVG 58

Query: 277 I--RETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP-----------KNIDF 322
              R   ++V  E  K T  E   +D+I+ + +  + ++E                +I  
Sbjct: 59  FVSRLPHNLV--EAFKSTLEEAAWSDVIVRVADAGDEQREEQLAVTDEVLDGLDCTDIPR 116

Query: 323 IFIGTKSDLYSTYTEEYDHLISSF-TGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           + +  K D  +T + + D L++S  TG GL++L+ K+  +LS++   +   +P  K
Sbjct: 117 LTVYNKCDKPNTLSFDPDILLTSAKTGYGLDKLLQKLDEVLSDRVHTIRVLLPYDK 172


>gi|317051926|ref|YP_004113042.1| ferrous iron transport protein B [Desulfurispirillum indicum S5]
 gi|316947010|gb|ADU66486.1| ferrous iron transport protein B [Desulfurispirillum indicum S5]
          Length = 718

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 226 GHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           G+ NAGKS+LFN +  A++ VA   + PG T D L   +D +   ++I D  G       
Sbjct: 11  GNPNAGKSTLFNTITGARQHVA---NYPGVTVDTLEGVIDFQKNTLRIVDLPGTYSLSAY 67

Query: 284 VEKEGIKRTFLEVENADLIL 303
            ++E + R FL  +  D +L
Sbjct: 68  SQEELVARRFLVRQKPDAVL 87


>gi|260438846|ref|ZP_05792662.1| GTP-binding protein Era [Butyrivibrio crossotus DSM 2876]
 gi|292808685|gb|EFF67890.1| GTP-binding protein Era [Butyrivibrio crossotus DSM 2876]
          Length = 298

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + +AI ++ P TTR+ + T+  D  G ++ + DT GI + 
Sbjct: 8   VALIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVYTDERGQIIFL-DTPGIHKA 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + + +  +      +E+ D+IL L E
Sbjct: 67  KNKLGEYMVTVAEKTLEDVDVILWLVE 93


>gi|223986364|ref|ZP_03636371.1| hypothetical protein HOLDEFILI_03682 [Holdemania filiformis DSM
           12042]
 gi|223961655|gb|EEF66160.1| hypothetical protein HOLDEFILI_03682 [Holdemania filiformis DSM
           12042]
          Length = 353

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G  +V++G +NAGKS+L NAL  K     +  PGTT D   +D+    + V + DT G+
Sbjct: 153 KGKDVVVMGMANAGKSTLLNALMDKPQLTSSRYPGTTLDFNPLDI----HGVTVYDTPGL 208

Query: 278 RETDDIV 284
              + ++
Sbjct: 209 TPRNSML 215


>gi|163790555|ref|ZP_02184984.1| hypothetical protein CAT7_08240 [Carnobacterium sp. AT7]
 gi|159874158|gb|EDP68233.1| hypothetical protein CAT7_08240 [Carnobacterium sp. AT7]
          Length = 377

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 9/146 (6%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+L N + K     +D+   +  PGTT D + I LD   +L+  
Sbjct: 169 RKGRNVFVVGVTNVGKSTLINQIIKSTAGVQDLITTSQFPGTTLDRIEIPLDDGKFLI-- 226

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
            DT GI     +    G K   L     ++  ++ ++N  + + F     F ++      
Sbjct: 227 -DTPGIIHRHQMAHVLGDKDLKLIAPKKEIKPIVYQLNEGQTLFFGGVARFDYLKGGRHS 285

Query: 332 YSTYTEEYDHLISSFTGEGLEELINK 357
           ++ +T   D LI     E  +EL  K
Sbjct: 286 FTCFTSN-DLLIHRTKLEKADELYQK 310


>gi|160933522|ref|ZP_02080910.1| hypothetical protein CLOLEP_02368 [Clostridium leptum DSM 753]
 gi|156867399|gb|EDO60771.1| hypothetical protein CLOLEP_02368 [Clostridium leptum DSM 753]
          Length = 289

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 19/114 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-- 255
            LK+ I     +G +   IR    ++I+G  N GKSS  N +AK++ A V D PG TR  
Sbjct: 107 LLKDRIIQWEQKGMVNRTIR----VMIVGIPNVGKSSFINRMAKQNRAKVEDRPGVTRGN 162

Query: 256 DVLTID-----LDLEGYLVKISDTAGIRE--------TDDIVEKEGIKRTFLEV 296
              TI      LD  G L    D   + E         D IV+ E +    LEV
Sbjct: 163 QWFTIGKAFDLLDTPGVLWPKFDDPNVGEKLAFTGAVKDQIVDTEQLASRLLEV 216


>gi|323466383|gb|ADX70070.1| GTP-binding protein era-like protein [Lactobacillus helveticus H10]
          Length = 301

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 20/161 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + VAI ++ P TTR+ ++     +   V   DT GI +  
Sbjct: 11  VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKMQVVFVDTPGIFKPH 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----------INSKKEISFP-----KNIDFIFI 325
             ++    K +   + + DL+L + E            N  KE+  P       +D I  
Sbjct: 71  SKLDDYMDKASLSSLNDVDLVLFMVESEEIGKGDQYIANLLKEVKVPVFLVINKVDQIHP 130

Query: 326 GTKSDLYSTY--TEEYDHL--ISSFTGEGLEELINKIKSIL 362
                +  +Y   E +  +  IS+  G G+E+L+N I   L
Sbjct: 131 NKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLNTINKYL 171


>gi|294784965|ref|ZP_06750253.1| GTP-binding protein Era [Fusobacterium sp. 3_1_27]
 gi|294486679|gb|EFG34041.1| GTP-binding protein Era [Fusobacterium sp. 3_1_27]
          Length = 298

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L    VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSGKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++ +         +++ D+IL L
Sbjct: 66  HLLGEYMTNIAVKILKDVDIILFL 89


>gi|298346303|ref|YP_003718990.1| GTP-binding protein Era family protein [Mobiluncus curtisii ATCC
           43063]
 gi|298236364|gb|ADI67496.1| GTP-binding protein Era family protein [Mobiluncus curtisii ATCC
           43063]
          Length = 350

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+  VI G  N GKS+L NA+  + +AI +D P TTR V    +    + + + D
Sbjct: 52  EDFRAGFAAVI-GRPNVGKSTLINAMVGRKIAITSDRPETTRRVARGIVHRPDFQLILVD 110

Query: 274 TAGI 277
           T GI
Sbjct: 111 TPGI 114


>gi|227498680|ref|ZP_03928824.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904136|gb|EEH90054.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 717

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 12/89 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK-----ISDT 274
           YKI + G+ N GK++LFNAL   +   V + PG T +        EG L+      I D 
Sbjct: 3   YKIALAGNPNTGKTTLFNALTGSN-QFVGNWPGVTVE------KKEGTLIGHPEILIQDL 55

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            GI        +E + RT+L  E  D IL
Sbjct: 56  PGIYSLSPYTLEEVVSRTYLVKERPDAIL 84


>gi|197287292|ref|YP_002153164.1| ATP/GTP-binding protein [Proteus mirabilis HI4320]
 gi|194684779|emb|CAR46827.1| putative ATP/GTP-binding protein [Proteus mirabilis HI4320]
          Length = 287

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N  LFL    +  +    L ++I     I ++G + AGKSSL NAL +  ++ V+D+ G 
Sbjct: 6   NHFLFLPKG-AKDVFLSHLNKLINYSPTIGLMGKTGAGKSSLINALFQSTLSPVSDVSGC 64

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRET 280
           TR      + +  + +   D  G+ E+
Sbjct: 65  TRQAQRFSMVMNNHTLTFVDLPGVGES 91


>gi|160882885|ref|ZP_02063888.1| hypothetical protein BACOVA_00847 [Bacteroides ovatus ATCC 8483]
 gi|260173751|ref|ZP_05760163.1| putative ATP GTP-binding protein [Bacteroides sp. D2]
 gi|315922015|ref|ZP_07918255.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156111749|gb|EDO13494.1| hypothetical protein BACOVA_00847 [Bacteroides ovatus ATCC 8483]
 gi|313695890|gb|EFS32725.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 362

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 18/117 (15%)

Query: 173 EADLDF---SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           ++DLDF   S EE + + S     N I      I    +  +L E I  G  +V +G S 
Sbjct: 160 KSDLDFDRQSVEEQINHIS-----NQIPVFFTSIHQPQTILRLRESISEGETVVFVGSSG 214

Query: 230 AGKSSLFNALAKKDVAIVTDI---PGTTRDVLT----IDLDLEGYLVKISDTAGIRE 279
            GKSSL NAL +K V + +DI    G  R   T    + ++  G L+   DT G+RE
Sbjct: 215 VGKSSLVNALCEKSVLLTSDISLSTGKGRHTSTRREMVLMNDSGVLI---DTPGVRE 268


>gi|78187585|ref|YP_375628.1| GTP-binding protein Era [Chlorobium luteolum DSM 273]
 gi|78167487|gb|ABB24585.1| GTP-binding protein Era [Chlorobium luteolum DSM 273]
          Length = 305

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  NAGKS+L NAL    ++IVT  P TTR  +T     +   V   DT GI E    
Sbjct: 13  IIGPPNAGKSTLMNALLDCKLSIVTPKPQTTRKRITGIYHDKQMQVVFLDTPGIMEPMQK 72

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKK 312
           + +  +  T   + +AD+I+ +     K+
Sbjct: 73  LHEAMLLATRDTLRDADVIIAMLPFRKKE 101


>gi|332296079|ref|YP_004438002.1| GTP-binding protein Era-like-protein [Thermodesulfobium narugense
           DSM 14796]
 gi|332179182|gb|AEE14871.1| GTP-binding protein Era-like-protein [Thermodesulfobium narugense
           DSM 14796]
          Length = 287

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ ++ +G +N GK+SL N L  + + IV+D P TTR   +     E Y +   D+ 
Sbjct: 1   MKSGF-VIFVGKTNVGKTSLINCLLGEKIGIVSDKPQTTRFRTSFIESTEEYQIIYVDSP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303
           G+    +++ +   K+ F  +++ ++I+
Sbjct: 60  GVHNVKNLLHERLNKKIFDSLDSFEIIV 87


>gi|259090123|pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Gdp Form I
 gi|259090124|pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Gdp Form I
          Length = 258

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 67/160 (41%), Gaps = 27/160 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ + G  N GK+SLFNAL       V + PG T +        +GY + + D  G    
Sbjct: 7   KVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-INS--------------KKEISFPKNIDFI-F 324
                 E I R +L   +ADL++L+ + +N               KK I     ID    
Sbjct: 66  GYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEXEKKVILAXTAIDEAKK 125

Query: 325 IGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKI 358
            G K D Y    E   HL       SS TGEGLEEL  KI
Sbjct: 126 TGXKIDRY----ELQKHLGIPVVFTSSVTGEGLEELKEKI 161


>gi|225181430|ref|ZP_03734873.1| ferrous iron transport protein B [Dethiobacter alkaliphilus AHT 1]
 gi|225167828|gb|EEG76636.1| ferrous iron transport protein B [Dethiobacter alkaliphilus AHT 1]
          Length = 633

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG+ N GKS LF  L    V  V++ PGTT ++     +L G  + I DT G+    
Sbjct: 4   VALLGNPNVGKSVLFYHLTGNYVT-VSNYPGTTVEISRGLANLYGKTLMIYDTPGMYSLS 62

Query: 282 DIVEKEGIKRTFLEVEN 298
            + E+E + R  L +EN
Sbjct: 63  PVTEEEAVTRRLL-MEN 78


>gi|172056862|ref|YP_001813322.1| GTP-binding protein Era [Exiguobacterium sibiricum 255-15]
 gi|171989383|gb|ACB60305.1| GTP-binding protein Era [Exiguobacterium sibiricum 255-15]
          Length = 302

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 34/178 (19%)

Query: 215 IIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR----------DVLTID 261
           + + G+K   + I+G  N GKS+  N +  + +AI++D P TTR          DV TI 
Sbjct: 1   MFKEGFKSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDVQTIF 60

Query: 262 LDLEG----------YLVKISDTAGIRETD------DIVEKEGIKRTFLEVENADLILLL 305
           +D  G          +++K++ T  +RE D      ++ E +G    F+  +  DL   +
Sbjct: 61  IDTPGIHKPKHKLGDFMMKVA-TNALREVDAILFMINVTEPKGKGDEFIIEKLKDLDTPI 119

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
             + +K ++  P +I  I    +++L           IS+  G  +E L+ +I  IL 
Sbjct: 120 ILVMNKVDLIHPNDIPPIIESYQNELNFAAVVP----ISALQGNNVEPLLQEISKILP 173


>gi|323493947|ref|ZP_08099064.1| GTPase YlqF [Vibrio brasiliensis LMG 20546]
 gi|323311888|gb|EGA65035.1| GTPase YlqF [Vibrio brasiliensis LMG 20546]
          Length = 311

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 13/104 (12%)

Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           F +E +V+      S+ + +N IL L   ++ H  + ++G+ IR     +I+G  N GKS
Sbjct: 75  FEKENNVKAMAITTSNVQEVNKILELCRKLAPH--REEIGKNIRT----MIMGIPNVGKS 128

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           ++ N LA + VA+  + P  TR    I+L   G +  +SDT GI
Sbjct: 129 TIINTLAGRTVAVTGNQPAVTRRQQRINLQ-NGIV--LSDTPGI 169


>gi|259090125|pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Gdp Form Ii
 gi|259090126|pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Gmppnp Form
 gi|259090127|pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Gmppnp Form
 gi|259090128|pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Apo Form
 gi|259090129|pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Apo Form
          Length = 258

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 67/160 (41%), Gaps = 27/160 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ + G  N GK+SLFNAL       V + PG T +        +GY + + D  G    
Sbjct: 7   KVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-INSKKE-------ISFPKNIDFIF-------- 324
                 E I R +L   +ADL++L+ + +N ++        +   K +            
Sbjct: 66  GYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKK 125

Query: 325 IGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKI 358
            G K D Y    E   HL       SS TGEGLEEL  KI
Sbjct: 126 TGMKIDRY----ELQKHLGIPVVFTSSVTGEGLEELKEKI 161


>gi|307150189|ref|YP_003885573.1| small GTP-binding protein [Cyanothece sp. PCC 7822]
 gi|306980417|gb|ADN12298.1| small GTP-binding protein [Cyanothece sp. PCC 7822]
          Length = 530

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 116/259 (44%), Gaps = 48/259 (18%)

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +  VQ    K     +L    +I +++++G+L        ++V+ G  +AGK+SL NAL 
Sbjct: 102 KRQVQQIQDKVSQKALLSRSQEIEANLARGEL--------RVVVFGTGSAGKTSLVNALI 153

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDI-VEKEGIKRTFLEVE 297
            + V  V    GTT+   T  L L+G    + I+DT GI E      ++E + R      
Sbjct: 154 GEMVGNVEATMGTTQIGETYRLKLKGISREILITDTPGILEAGIAGTQREQLARQL--AT 211

Query: 298 NADLILLLKEINSKKEISFPKNI------DFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            ADL+L + + + ++    P  +        + I  K+DLYS   +E   +I +   + +
Sbjct: 212 EADLLLFVIDNDLRQSEYEPLRMLVGIGKRSLLIFNKTDLYS---DEDQEVILNQLKQRV 268

Query: 352 EELINK--IKSILSNK----------FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           ++ IN   I ++ +N            +  P  IP  KR             +A++   +
Sbjct: 269 QDFINAADIVALAANPQPVQLENGELIQPEPDIIPLIKR-------------LAAILRAE 315

Query: 400 CGLDIIAENLRLASVSLGK 418
            G D+IA+N+ L S  LG+
Sbjct: 316 -GEDLIADNILLQSQRLGE 333


>gi|41615156|ref|NP_963654.1| hypothetical protein NEQ366 [Nanoarchaeum equitans Kin4-M]
 gi|40068880|gb|AAR39215.1| NEQ366 [Nanoarchaeum equitans Kin4-M]
          Length = 228

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 7/76 (9%)

Query: 206 HISQGKLGEIIRNGYK----IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            + + K+ E+ +N  K    + + G  N GKSSL NAL  + VA    IPG T+ +  I 
Sbjct: 63  RVLRNKIKEVAKNINKDKIIVCVAGFPNTGKSSLINALRGRHVAGTAPIPGKTKGIQLIK 122

Query: 262 LDLEGYLVKISDTAGI 277
           L  + YL    DT GI
Sbjct: 123 LSNKIYL---KDTPGI 135


>gi|289642689|ref|ZP_06474829.1| GTP-binding protein Era [Frankia symbiont of Datisca glomerata]
 gi|289507519|gb|EFD28478.1| GTP-binding protein Era [Frankia symbiont of Datisca glomerata]
          Length = 309

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +  + G   R+G+   + G  NAGKS+L NAL    VAI +  P TTR  +   +  +  
Sbjct: 3   ASAEAGAPFRSGFACFV-GRPNAGKSTLTNALVGSKVAITSGRPQTTRHAVRGIVHRDDA 61

Query: 268 LVKISDTAGIRETDDIVEK---EGIKRTFLEVENADLILLLKEINSKKE-------ISFP 317
            + + DT G+     ++ +   + ++ T  EV+     +   E     +          P
Sbjct: 62  QLVLVDTPGLHRPRTLLGQRLNDVVRATLSEVDVVAFCVPANEAVGPGDRFIAGELARLP 121

Query: 318 KNIDFIFIGTKSDLYS 333
           K    + + TKSDL S
Sbjct: 122 KRTPLVAVVTKSDLVS 137


>gi|37528399|ref|NP_931744.1| putative GTPase HflX [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787837|emb|CAE16952.1| GTP-binding protein [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 426

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 31/215 (14%)

Query: 188 SSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIV---ILGHSNAGKSSLFNALAKKD 243
           + + +L D I  + N +S    Q + G   RN   I    ++G++NAGKSSLFN +   +
Sbjct: 162 TDRRLLRDKIRQILNRLSRVEKQREQGRQARNKADIPTVSLVGYTNAGKSSLFNRMTAAE 221

Query: 244 VAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300
           V     +  T    L  ID++  G +V ++DT G IR    D+V     K T  E   A 
Sbjct: 222 VYAADQLFATLDPTLRRIDVNDVGTVV-LADTVGFIRHLPHDLV--AAFKATLQETRQAT 278

Query: 301 LILLLKE------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------- 341
           L+L + +            ++S  E      I  + +  K D+  ++T   D        
Sbjct: 279 LLLHIVDAADSRIDENIAAVDSVLEEIEAHEIPVLLVMNKIDMLDSFTPRIDRNEDNLPV 338

Query: 342 --LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              +S+ TGEG+  L+  +   LS +       +P
Sbjct: 339 RVWLSAQTGEGIPLLLQALTERLSGEIAHYELRLP 373


>gi|315658402|ref|ZP_07911274.1| GTP-binding protein HflX [Staphylococcus lugdunensis M23590]
 gi|315496731|gb|EFU85054.1| GTP-binding protein HflX [Staphylococcus lugdunensis M23590]
          Length = 415

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++I ++G++NAGKSS FN L+     ++++   T  P T +    I L+ EG+ V I+DT
Sbjct: 209 FQIALVGYTNAGKSSWFNVLSGESTYEQNLLFATLDPKTRQ----IQLN-EGFNVIITDT 263

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E +NAD++L
Sbjct: 264 VGFIQKLPTTLVAAFKSTLEEAKNADILL 292


>gi|289550899|ref|YP_003471803.1| GTP-binding protein HflX [Staphylococcus lugdunensis HKU09-01]
 gi|289180431|gb|ADC87676.1| GTP-binding protein HflX [Staphylococcus lugdunensis HKU09-01]
          Length = 412

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++I ++G++NAGKSS FN L+     ++++   T  P T +    I L+ EG+ V I+DT
Sbjct: 206 FQIALVGYTNAGKSSWFNVLSGESTYEQNLLFATLDPKTRQ----IQLN-EGFNVIITDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E +NAD++L
Sbjct: 261 VGFIQKLPTTLVAAFKSTLEEAKNADILL 289


>gi|237722944|ref|ZP_04553425.1| ribosome-associated GTPase [Bacteroides sp. 2_2_4]
 gi|229447466|gb|EEO53257.1| ribosome-associated GTPase [Bacteroides sp. 2_2_4]
          Length = 362

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 18/117 (15%)

Query: 173 EADLDF---SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           ++DLDF   S EE + + S     N I      I    +  +L E I  G  +V +G S 
Sbjct: 160 KSDLDFDRQSVEEQINHIS-----NQIPVFFTSIHQPQTILRLRESISEGETVVFVGSSG 214

Query: 230 AGKSSLFNALAKKDVAIVTDI---PGTTRDVLT----IDLDLEGYLVKISDTAGIRE 279
            GKSSL NAL +K V + +DI    G  R   T    + ++  G L+   DT G+RE
Sbjct: 215 VGKSSLVNALCEKSVLLTSDISLSTGKGRHTSTRREMVLMNDSGVLI---DTPGVRE 268


>gi|261345214|ref|ZP_05972858.1| GTP-binding protein HflX [Providencia rustigianii DSM 4541]
 gi|282566909|gb|EFB72444.1| GTP-binding protein HflX [Providencia rustigianii DSM 4541]
          Length = 426

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 35/236 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           + ++G++NAGKSSLFN +   DV     +  T    L  ID++  G +V ++DT G IR 
Sbjct: 200 VSLVGYTNAGKSSLFNRMTSADVYAADQLFATLDPTLRRIDVNDVGTVV-LADTVGFIRH 258

Query: 280 -TDDIVEKEGIKRTFLEVENADLILL------------LKEINSKKEISFPKNIDFIFIG 326
              D+V     K T  E   A L+L             ++ + S  E      I  + + 
Sbjct: 259 LPHDLV--AAFKATLQETREATLLLHVIDAADNRLDENIQAVESVLEEIEANEIPTLLVM 316

Query: 327 TKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            K D+   +    D           +S+ TGEG+  L+  +   LS +       +P ++
Sbjct: 317 NKVDMLEDFVPRIDRDEDNKPARVWVSAQTGEGIPLLLQALTERLSGEIAHFELRLPPNE 376

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLD-IIAENLRLASVSLGKITGCVDVEQLLDII 432
             L       R+ ++ S+  +    D  I   +R+  V   ++  C   +QL D +
Sbjct: 377 GRLRS-----RFYQLQSIEREWQEEDGTIGLEVRMPMVDWRRL--CKQEQQLPDYV 425


>gi|317058880|ref|ZP_07923365.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
 gi|313684556|gb|EFS21391.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
          Length = 362

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+  KN+   +    K+     NG ++++LG +N GKSS+ N L  K+   V+  PGTT 
Sbjct: 136 IVSCKNNYGMNGVLRKIQHFYPNGVEVLVLGVTNVGKSSVINRLLGKNRVTVSKYPGTT- 194

Query: 256 DVLTIDLDLEGYLVKISDTAGI----RETDDIVEKEGIK 290
            +L+   ++ G  + + DT G+    R +D ++E++ ++
Sbjct: 195 -LLSTMNEISGTNLCLIDTPGLIPEGRFSDLMIEEDQLR 232


>gi|307710602|ref|ZP_07647036.1| conserved hypothetical protein [Streptococcus mitis SK564]
 gi|307618647|gb|EFN97789.1| conserved hypothetical protein [Streptococcus mitis SK564]
          Length = 368

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 41/165 (24%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
           QW+ +  H       D+  +  ++ Q  + KEV++ I                 E  R G
Sbjct: 123 QWLMERAHEEGLRPVDVVLTSAQNKQ--AIKEVIDKI-----------------EHYRKG 163

Query: 220 YKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
             + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y   I DT
Sbjct: 164 RDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY---IYDT 220

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 221 PGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|206576585|ref|YP_002240728.1| GTPase family protein [Klebsiella pneumoniae 342]
 gi|206565643|gb|ACI07419.1| GTPase family protein [Klebsiella pneumoniae 342]
          Length = 291

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           I I+G S AGKSSL N L + +V+ V+D+   TRDVL   L    + + I D  G+ E
Sbjct: 39  IGIMGKSGAGKSSLCNELFRGEVSPVSDVNACTRDVLRFRLRSGRHSLVIVDLPGVGE 96


>gi|170744646|ref|YP_001773301.1| GTP-binding protein Era [Methylobacterium sp. 4-46]
 gi|168198920|gb|ACA20867.1| GTP-binding protein Era [Methylobacterium sp. 4-46]
          Length = 315

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 32/185 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTA 275
           R G+ + ++G  NAGKS+L N+L    V+IV+    TTR  L   + +EG   +   DT 
Sbjct: 21  RAGF-VALIGVPNAGKSTLLNSLVGSKVSIVSRKVQTTR-ALVRGIAIEGAAQIVFVDTP 78

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------------EISFPK--- 318
           GI      +++  +   +    +AD + LL  ++++K              E+  PK   
Sbjct: 79  GIFAPKRRLDRAMVTSAWSGAADADAVCLL--VDARKGVDPEVEAVLGRLPELRRPKILV 136

Query: 319 --NIDFIFIGTKSDLYSTYTEE--YDH--LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              ID I      DL +       +DH  ++S+ TG+G+ +L    + +L+      P+ 
Sbjct: 137 LNKIDVIARERLLDLAAALNGRLPFDHTFMVSALTGDGVADL----RRVLAGLMPPGPWL 192

Query: 373 IPSHK 377
            P  +
Sbjct: 193 YPEDQ 197


>gi|148553135|ref|YP_001260717.1| GTP-binding protein Era [Sphingomonas wittichii RW1]
 gi|148498325|gb|ABQ66579.1| GTP-binding protein Era [Sphingomonas wittichii RW1]
          Length = 297

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 32/185 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275
           R G+ + ++G  NAGKS+L NAL  + VAIV+    TTR  L I + + G   + + DT 
Sbjct: 4   RCGF-VAVVGAPNAGKSTLVNALVGQKVAIVSPKAQTTRTRL-IGVAIAGESQILLVDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------------PKNI- 320
           GI      +++  +   +   ++ADLI  +  I++K  I+               PK + 
Sbjct: 62  GIFAPRRRLDRAMVAAAWGGAQDADLIAFV--IDAKTGITHRIGELLDTLAQRREPKLVV 119

Query: 321 -DFIFIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            + + I +K         L      E   ++S+ TG+G+ +L    +  L+++  + P+ 
Sbjct: 120 LNKVDICSKESLLELAVRLQEKLAPEAIFMVSAATGDGVADL----RQTLADRVPEGPWH 175

Query: 373 IPSHK 377
            P  +
Sbjct: 176 FPEEQ 180


>gi|119716151|ref|YP_923116.1| GTP-binding protein Era [Nocardioides sp. JS614]
 gi|226741224|sp|A1SHZ4|ERA_NOCSJ RecName: Full=GTPase Era
 gi|119536812|gb|ABL81429.1| GTP-binding protein Era [Nocardioides sp. JS614]
          Length = 313

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 16/129 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  NAGKS+L NAL    V I +D P TTR V+   +  +   + + DT G
Sbjct: 13  RSGF-VSFVGRPNAGKSTLTNALVGSKVVITSDKPQTTRTVVRGIVHRDDAQLILVDTPG 71

Query: 277 IRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIF 324
           +     ++ +   + +K T  EV   D++ +    N K          E++  K    + 
Sbjct: 72  LHRPRTLLGERLNDLVKTTLAEV---DVVAVCLPANEKVGPGDRFIVNEMAKIKRTTKVA 128

Query: 325 IGTKSDLYS 333
           I TK+DL S
Sbjct: 129 IATKTDLAS 137


>gi|327473478|gb|EGF18898.1| GTP-binding protein [Streptococcus sanguinis SK408]
          Length = 368

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L      
Sbjct: 158 EYCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSHFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L  +N      LK I+ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLTAKN------LKYISPKKEIK-PKT 251


>gi|295424887|ref|ZP_06817602.1| GTP-binding protein Era [Lactobacillus amylolyticus DSM 11664]
 gi|295065453|gb|EFG56346.1| GTP-binding protein Era [Lactobacillus amylolyticus DSM 11664]
          Length = 302

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + VAI ++ P TTR+ ++     +   V   DT GI +  
Sbjct: 12  VAIVGRPNVGKSTLMNRLVGEKVAITSNKPQTTRNRISGIYTSDDMQVVFVDTPGIFKPH 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
             +++   K ++  + + DL++ + E
Sbjct: 72  SKLDEYMDKASYSSLNDVDLVMFMVE 97


>gi|159490690|ref|XP_001703306.1| hypothetical protein CHLREDRAFT_114154 [Chlamydomonas reinhardtii]
 gi|158280230|gb|EDP05988.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 450

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           K+ I+G  NAGKS+L NAL  +  A+    PG TRD +          V++ DTAG
Sbjct: 193 KLAIMGLPNAGKSTLLNALLGEQRAVTGPEPGLTRDSVRAAWTYGDTAVELVDTAG 248



 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGT--TRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+LFN L ++  A+V D P +  TRD       L   + +++DT+G+
Sbjct: 1   VALVGRPNVGKSALFNRLIRRRQALVYDTPASHVTRDYQEGRAQLGDLVFRVADTSGL 58


>gi|78188547|ref|YP_378885.1| GTP-binding protein Era [Chlorobium chlorochromatii CaD3]
 gi|78170746|gb|ABB27842.1| GTP-binding protein Era [Chlorobium chlorochromatii CaD3]
          Length = 305

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           +I+G  NAGKS+L NAL    ++IVT  P TTR  +T   + E   +   DT GI +   
Sbjct: 12  MIIGQPNAGKSTLLNALLDFKLSIVTPKPQTTRKKITGIYNSERCQIIFLDTPGILKPRQ 71

Query: 283 IVEKEGIKRTFLEVENADLILLL 305
            + +  +      V +AD+++ L
Sbjct: 72  KLHESMLGVVRSTVTDADVLIAL 94


>gi|325688137|gb|EGD30156.1| GTP-binding protein [Streptococcus sanguinis SK72]
          Length = 368

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 41/165 (24%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
           QW+ +  H       D+  +  ++ Q  + KE+++ I                 E  R G
Sbjct: 123 QWLTERAHEEGLRPVDVVLTSAQNKQ--AIKELIDKI-----------------EHCRKG 163

Query: 220 YKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
             + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L         +D 
Sbjct: 164 RDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL---------ADG 214

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
           + I +T  I+ +  +   +L  +N      LK I+ KKEI  PK 
Sbjct: 215 SHIYDTPGIIHRHQMAH-YLSAKN------LKYISPKKEIK-PKT 251


>gi|315654892|ref|ZP_07907797.1| GTP-binding protein Era [Mobiluncus curtisii ATCC 51333]
 gi|315490853|gb|EFU80473.1| GTP-binding protein Era [Mobiluncus curtisii ATCC 51333]
          Length = 350

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+  VI G  N GKS+L NA+  + +AI +D P TTR V    +    + + + D
Sbjct: 52  EGFRAGFAAVI-GRPNVGKSTLINAMVGRKIAITSDRPETTRRVARGIVHRPDFQLILVD 110

Query: 274 TAGI 277
           T GI
Sbjct: 111 TPGI 114


>gi|295114611|emb|CBL35458.1| iron-only hydrogenase maturation protein HydF [butyrate-producing
           bacterium SM4/1]
          Length = 432

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGI 277
           I   G  NAGKSSL NA   +D+A+V+D+ GTT D +   ++L   G  V I DT GI
Sbjct: 14  ISFFGCRNAGKSSLLNAFTGQDLAVVSDVKGTTTDPVKKSMELLPLGPAV-IIDTPGI 70


>gi|118580146|ref|YP_901396.1| GTP-binding protein Era [Pelobacter propionicus DSM 2379]
 gi|259645964|sp|A1APR8|ERA_PELPD RecName: Full=GTPase Era
 gi|118502856|gb|ABK99338.1| GTP-binding protein Era [Pelobacter propionicus DSM 2379]
          Length = 296

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 21/192 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R GY + I+G  N GKS+L N +  + +AI +D P TTR+ +    ++    +   DT G
Sbjct: 7   RFGY-VSIVGRPNVGKSTLLNRIIGEKIAITSDKPQTTRNRIQGIHNIANGQIVFIDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------DFIFIGTKSD 330
           I      + K  +      +   DL+LL+ +     +    +++        + +  K D
Sbjct: 66  IHACHSRLNKGMVDAALAALRGVDLLLLVVDAGGAIDDRLVRDVLGGTGTPVMLVLNKVD 125

Query: 331 L----------YSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           L           + +++ Y       IS+ +GEG++ LI  +   L       P  I + 
Sbjct: 126 LLADKRVLLERMAAWSQLYPFREILPISAGSGEGVDGLIETVCGYLPEGQPLFPDDILTD 185

Query: 377 KRHLYHLSQTVR 388
               + +++ +R
Sbjct: 186 LPERFIVAEMIR 197


>gi|227833308|ref|YP_002835015.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184292|ref|ZP_06043713.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454324|gb|ACP33077.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC
           700975]
          Length = 492

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 84/200 (42%), Gaps = 30/200 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           +I I G++NAGKSSL NA+    V +V D    T D  T   +L +G  V  +DT G   
Sbjct: 264 QIAIAGYTNAGKSSLINAMTGAGV-LVEDALFATLDPTTRRAELADGRQVVFTDTVGFVR 322

Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINS--------KKEISFPKNIDF 322
                  E  K T  EV +ADL+L          LK+I +         KE       + 
Sbjct: 323 HLPTQLVEAFKSTLEEVLSADLMLHVVDGSDPFPLKQIEAVNAVIYDIVKETGEDAPPEI 382

Query: 323 IFIGTKSDLYSTYTEEYDH--------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           I I            E  H         +S+ TGEG++EL  +++  L+++ + +   IP
Sbjct: 383 IVINKIDQADPLVLAELRHALDRDNVVYVSAKTGEGIDELTTRVELFLNSRDEHVQLLIP 442

Query: 375 SHKRHLY---HLSQTVRYLE 391
             +  +    H   TVR  E
Sbjct: 443 FTRGDVVDRIHTQGTVRSEE 462


>gi|145489331|ref|XP_001430668.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397767|emb|CAK63270.1| unnamed protein product [Paramecium tetraurelia]
          Length = 416

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 19/125 (15%)

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI-------SSHISQGKLGEIIRNGYK 221
           R F       + ++   N SS  +    L  + D+       S  I   KL E+I+N  K
Sbjct: 192 REFATVLFKANTQQQQSNLSSASIYKKTLSQRQDLADDLTSSSKAIGADKLLELIKNYSK 251

Query: 222 ---------IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
                    + ++G+ N GKSS+ N+L +     V+  PG T+ +  + +D +   VKI 
Sbjct: 252 NDGVKSSVTVGVIGYPNVGKSSVINSLKRSKACAVSSTPGFTKGLQEVVIDSQ---VKII 308

Query: 273 DTAGI 277
           D  G+
Sbjct: 309 DCPGV 313


>gi|88798309|ref|ZP_01113895.1| GTP-binding protein [Reinekea sp. MED297]
 gi|88779085|gb|EAR10274.1| GTP-binding protein [Reinekea sp. MED297]
          Length = 286

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           ++G +G+ +R+    V++G  N GKS+L N LA K +A V D P  TR+   I L  +  
Sbjct: 108 NRGTVGKPVRS----VVVGIPNVGKSTLINGLAGKKIARVGDEPAVTRNQQKIQLAQDFT 163

Query: 268 LVKISDTAGI 277
           L+   DT GI
Sbjct: 164 LM---DTPGI 170


>gi|319955783|ref|YP_004167046.1| ferrous iron transport protein b [Nitratifractor salsuginis DSM
           16511]
 gi|319418187|gb|ADV45297.1| ferrous iron transport protein B [Nitratifractor salsuginis DSM
           16511]
          Length = 706

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD---VLTIDLDLEG---YL 268
           +++   K+V++G  N GKSSL NA+A   +  V +  G T D   V T   D +G   Y 
Sbjct: 1   MVKEKIKVVLVGQPNVGKSSLINAIAHAKLH-VGNFAGVTVDVSEVKTTFCDAQGCAEYE 59

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           + I D  G    +D   +E + + +L  E  DLI+
Sbjct: 60  IDIIDLPGTYSLNDYSMEEKVTKDYLLKEKYDLIV 94


>gi|296876486|ref|ZP_06900537.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432479|gb|EFH18275.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           parasanguinis ATCC 15912]
          Length = 286

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 126 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 179


>gi|257452337|ref|ZP_05617636.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
          Length = 372

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+  KN+   +    K+     NG ++++LG +N GKSS+ N L  K+   V+  PGTT 
Sbjct: 146 IVSCKNNYGMNGVLRKIQHFYPNGVEVLVLGVTNVGKSSVINRLLGKNRVTVSKYPGTT- 204

Query: 256 DVLTIDLDLEGYLVKISDTAGI----RETDDIVEKEGIK 290
            +L+   ++ G  + + DT G+    R +D ++E++ ++
Sbjct: 205 -LLSTMNEISGTNLCLIDTPGLIPEGRFSDLMIEEDQLR 242


>gi|227112906|ref|ZP_03826562.1| GTP-binding protein Era [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 301

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 37/193 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  + + +  EG Y     DT G+   
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRI-MGIHTEGPYQAIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I EK  I R             L    +   I   + I F+  GT       + ++ D
Sbjct: 68  --IEEKRAINR-------------LMNRAASSSIGDVELIIFVVEGTH------WNDDDD 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++    + L  L  INK+ ++ ++K K LP        H+  LSQ + +L++  ++ E
Sbjct: 107 MVLNKLRDQKLPVLLAINKVDNV-TDKTKLLP--------HIQFLSQQMDFLDVVPISAE 157

Query: 398 KDCGLDIIAENLR 410
           K   +D IA  +R
Sbjct: 158 KGTNVDTIANIVR 170


>gi|331091567|ref|ZP_08340404.1| GTP-binding protein Era [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330403732|gb|EGG83286.1| GTP-binding protein Era [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 298

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 216 IRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           +R  YK   + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   V   
Sbjct: 1   MRADYKSGFVTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEQGQVVFV 60

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           DT GI +  + + +  +      +   D++L L E
Sbjct: 61  DTPGIHKAKNKLGEYMVNVAERTLNEVDVVLWLVE 95


>gi|157128879|ref|XP_001661529.1| GTP-binding protein-invertebrate [Aedes aegypti]
 gi|108872457|gb|EAT36682.1| GTP-binding protein-invertebrate [Aedes aegypti]
          Length = 607

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR   ++ I+G  N GKSSL N+L +K   +V   PG T+ +  + +D     VK+ D+ 
Sbjct: 259 IRTSIRVGIVGLPNVGKSSLVNSLKRKRACLVGARPGITKQMQEVQIDSH---VKLLDSP 315

Query: 276 GI 277
           GI
Sbjct: 316 GI 317


>gi|328700593|ref|XP_003241317.1| PREDICTED: guanine nucleotide-binding protein-like 1-like
           [Acyrthosiphon pisum]
          Length = 592

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 214 EIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           ++ +N Y  I +LG  NAGKSS+ NAL  K V  V+  PG T+   TI L      V++ 
Sbjct: 339 DLFQNNYLTIGLLGQPNAGKSSVLNALMGKKVVSVSGTPGHTKHFQTIFLTSS---VRLC 395

Query: 273 DTAGI 277
           D  G+
Sbjct: 396 DCPGL 400


>gi|325299805|ref|YP_004259722.1| ferrous iron transport protein B [Bacteroides salanitronis DSM
           18170]
 gi|324319358|gb|ADY37249.1| ferrous iron transport protein B [Bacteroides salanitronis DSM
           18170]
          Length = 827

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 179 SEEEDVQNFSSKEVLNDI---LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           SEEE   +    EVLN I   + + ++    I+QGK     R    + ++G+ N GK+SL
Sbjct: 73  SEEEARASIKETEVLNPIAEDIPVSDEKLREIAQGK-----RRTINVALVGNPNCGKTSL 127

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
           FN +A      V +  G T D      D +GY  ++ D  G         +E   R  + 
Sbjct: 128 FN-VASGAHEHVGNYSGVTVDAKAGHFDFQGYHFRLVDLPGTYSLSAYSPEELYVRKHII 186

Query: 296 VENADLIL 303
            +  D+I+
Sbjct: 187 EQTPDVII 194


>gi|304389932|ref|ZP_07371889.1| GTP-binding protein Era [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315657184|ref|ZP_07910068.1| GTP-binding protein Era [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|304326825|gb|EFL94066.1| GTP-binding protein Era [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315492287|gb|EFU81894.1| GTP-binding protein Era [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 333

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+  VI G  N GKS+L NA+  + +AI +D P TTR V    +    + + + D
Sbjct: 35  EDFRAGFAAVI-GRPNVGKSTLINAMVGRKIAITSDRPETTRRVARGIVHRPDFQLILVD 93

Query: 274 TAGI 277
           T GI
Sbjct: 94  TPGI 97


>gi|289550632|ref|YP_003471536.1| GTP-binding protein YqeH, possibly involved in replication
           initiation [Staphylococcus lugdunensis HKU09-01]
 gi|289180164|gb|ADC87409.1| GTP-binding protein YqeH, possibly involved in replication
           initiation [Staphylococcus lugdunensis HKU09-01]
          Length = 366

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 21/152 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R+   + I+G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++   
Sbjct: 158 RDHEDVYIVGTTNVGKSTLINKLIELSVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY-- 215

Query: 272 SDTAGI------------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            DT GI            +E   I+ K+ IK+   ++ N    L    +     +S  K 
Sbjct: 216 -DTPGIIQEHQMTHLVTEKELKTIIPKKEIKQRVYQL-NESQTLFFGGLARIDYVSGGKR 273

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
               F     +++ T TE+ + L  +  G+ L
Sbjct: 274 PLICFFSNDLNIHRTKTEKANELWKNQLGDLL 305


>gi|21672897|ref|NP_660962.1| ferrous iron transport protein B [Chlorobium tepidum TLS]
 gi|21645951|gb|AAM71304.1| ferrous iron transport protein B [Chlorobium tepidum TLS]
          Length = 712

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G+ NAGKSSLFNAL       V + PG T +     LD +GY + + D  G     
Sbjct: 9   VALAGNPNAGKSSLFNALTGAHQR-VGNFPGVTIEKHEGYLDYKGYRITVVDLPGTYSLT 67

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
               +E + R F+  E  D+++
Sbjct: 68  PYSPEEIVTRRFIIDEKPDVVV 89


>gi|319947077|ref|ZP_08021311.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           australis ATCC 700641]
 gi|319747125|gb|EFV99384.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           australis ATCC 700641]
          Length = 290

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 130 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 183


>gi|239909250|ref|YP_002955992.1| GTP-binding protein Era homolog [Desulfovibrio magneticus RS-1]
 gi|239799117|dbj|BAH78106.1| GTP-binding protein Era homolog [Desulfovibrio magneticus RS-1]
          Length = 305

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT---IDLDLEGYLVKISDTAGIR 278
           +V+LG +NAGKS+L N L  + ++IV+  P TTR+ ++      DL+   +   DT G+ 
Sbjct: 10  VVMLGPTNAGKSTLLNRLIGQKISIVSPKPQTTRNSISGIITQGDLQAVFL---DTPGLH 66

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305
                +    ++  +  +  AD++LL+
Sbjct: 67  RQKRGIAPLLLRSAYAALGQADVVLLI 93


>gi|239616689|ref|YP_002940011.1| GTP-binding proten HflX [Kosmotoga olearia TBF 19.5.1]
 gi|239505520|gb|ACR79007.1| GTP-binding proten HflX [Kosmotoga olearia TBF 19.5.1]
          Length = 379

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 35/201 (17%)

Query: 207 ISQGKLGEIIR-----NGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           I Q K+ E+IR     N   +V  +G++N GKSSL +AL   D+ +   +  +T DV T 
Sbjct: 138 IKQRKVREVIRKKRQRNSIPVVSFVGYTNVGKSSLISALTGADLLVENQL-FSTLDVKTC 196

Query: 261 DLDL-EGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLL-----KEINSKK 312
            L L  G  V ISDT G IRE   +++  +  K T  E + +DL++++     + ++ K 
Sbjct: 197 RLKLPSGRRVLISDTVGFIRELPQELI--QSFKSTLEEAKFSDLLVVVLDASDRYLDEKL 254

Query: 313 EI-----------SFPK-----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           EI           + PK      ID        +L +++ +     +S+     L+EL  
Sbjct: 255 EIINSTLRDIGAENVPKLNVINKIDKCTGERLKELGNSFPDAV--FVSAVLKYNLDELKE 312

Query: 357 KIKSILSNKFKKLPFSIPSHK 377
           KI  +LS  F+K    +P  K
Sbjct: 313 KIDIVLSQSFRKYKLVVPPEK 333


>gi|116621147|ref|YP_823303.1| small GTP-binding protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122254883|sp|Q026Q1|ENGB_SOLUE RecName: Full=Probable GTP-binding protein EngB
 gi|116224309|gb|ABJ83018.1| small GTP-binding protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 191

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 22/167 (13%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +I  LG SN GKSSL NAL   K +A  ++ PG T+ +    +D + YLV +      R 
Sbjct: 25  EIAFLGRSNVGKSSLINALTGHKKLAFTSNTPGRTQTINFYRVDEKFYLVDLPGYGYARV 84

Query: 280 TDDIVEKEGIK-RTFLEVEN----ADLILLLKEINSKKEISFPKNID-----FIFIGTKS 329
                E+  +    +LE       + LIL  +    +K++   + +D     ++ + TK+
Sbjct: 85  PAGFAEQWKVLIEHYLEFRETLKFSCLILDTRRGWMEKDLDLKRWLDHHGRPYLVVATKT 144

Query: 330 D----------LYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNK 365
           D          L +   E  + L  S+ +G G+ E+   I + L  +
Sbjct: 145 DKLNQSEQERGLRAIRQEGVEPLPFSALSGRGVREIWQAITTTLQAR 191


>gi|114327657|ref|YP_744814.1| GTP-binding protein Era [Granulibacter bethesdensis CGDNIH1]
 gi|114315831|gb|ABI61891.1| GTP-binding protein era [Granulibacter bethesdensis CGDNIH1]
          Length = 335

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDL----EGYLVKI 271
           R GY   +LG  NAGKS+L NAL    V+IV+    TTR  VL I +      E   + +
Sbjct: 39  RCGYA-ALLGAPNAGKSTLVNALTGAKVSIVSPKAQTTRFRVLGIAMHQTEAGETSQILM 97

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            DT GI      +++  +   +  V++ADL LL+
Sbjct: 98  VDTPGIFTPRRRLDRAMVAAAWTGVQDADLGLLM 131


>gi|325849572|ref|ZP_08170810.1| ribosome biogenesis GTPase Era [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480053|gb|EGC83130.1| ribosome biogenesis GTPase Era [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 293

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 97/201 (48%), Gaps = 22/201 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + ++G +N GKS+L   +  + ++I+++ P TTRD + I  + E   +   DT 
Sbjct: 1   MKSGF-VSVVGRANVGKSTLMEKILGEKISIISNKPQTTRDEIKIIYNDENSQIIFLDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPK----- 318
           GI+   + +++  ++ +   ++++D++  + +            ++  ++I  PK     
Sbjct: 60  GIQTPRNKLQEHLLEVSEDSLKDSDIVTFIVDNSLTIGRLDKMILDLLEKIKVPKILLIN 119

Query: 319 NIDFIFIGTKSDLYSTYT--EEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             D +  G    +  TY     +D++  IS+   E +E+ I  IK IL       P  + 
Sbjct: 120 KCDLLEEGEIDQIKKTYIGLNAFDYIIPISALNDENIEKYIQTIKEILPEGPLYYPSDMI 179

Query: 375 SHKRHLYHLSQTVRYLEMASL 395
           + K   + +S+ +R   + +L
Sbjct: 180 TDKNERFIVSEIIREKALRNL 200


>gi|294786873|ref|ZP_06752127.1| GTP-binding protein Era [Parascardovia denticolens F0305]
 gi|315226509|ref|ZP_07868297.1| GTP-binding protein Era [Parascardovia denticolens DSM 10105]
 gi|294485706|gb|EFG33340.1| GTP-binding protein Era [Parascardovia denticolens F0305]
 gi|315120641|gb|EFT83773.1| GTP-binding protein Era [Parascardovia denticolens DSM 10105]
          Length = 352

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ I ++G  N GKS+L NA+  K VAI +  P TTR  +   +  +   + + D
Sbjct: 39  EAFRSGF-IAVVGRPNVGKSTLINAIVGKQVAITSSKPETTRKAIRAIVTTDDCQLVLVD 97

Query: 274 TAG 276
           T G
Sbjct: 98  TPG 100


>gi|261820520|ref|YP_003258626.1| GTP-binding protein Era [Pectobacterium wasabiae WPP163]
 gi|261604533|gb|ACX87019.1| GTP-binding protein Era [Pectobacterium wasabiae WPP163]
          Length = 301

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 37/193 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  + + +  EG Y     DT G+   
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRI-MGIHTEGPYQAIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I EK  I R             L    +   I   + I F+  GT       + ++ D
Sbjct: 68  --IEEKRAINR-------------LMNRAASSSIGDVELIIFVVEGTH------WNDDDD 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++    + L  L  INK+ ++ ++K K LP        H+  LSQ + +L++  ++ E
Sbjct: 107 MVLNKLRDQKLPVLLAINKVDNV-TDKTKLLP--------HIQFLSQQMDFLDVVPISAE 157

Query: 398 KDCGLDIIAENLR 410
           K   +D IA  +R
Sbjct: 158 KGTNVDTIASIVR 170


>gi|210617164|ref|ZP_03291431.1| hypothetical protein CLONEX_03653 [Clostridium nexile DSM 1787]
 gi|210149439|gb|EEA80448.1| hypothetical protein CLONEX_03653 [Clostridium nexile DSM 1787]
          Length = 299

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 216 IRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           +R  YK   + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L +E   +   
Sbjct: 1   MRADYKSGFVTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTMEEGQIVFV 60

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           DT GI +  + + +  +      +   D++L L E
Sbjct: 61  DTPGIHKAKNKLGEYMVNVAERTLNEVDVVLWLVE 95


>gi|78189141|ref|YP_379479.1| GTP-binding protein HflX [Chlorobium chlorochromatii CaD3]
 gi|78171340|gb|ABB28436.1| GTP-binding protein HflX [Chlorobium chlorochromatii CaD3]
          Length = 431

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 24/176 (13%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGY----------KIVILGHSNAGKSSLFNALA 240
           ++  D   ++N I+  + + KL E+ R  Y          ++ ++G++NAGKS+L NAL 
Sbjct: 165 QIETDRRLVRNRIA--LLKKKLREVERQHYTRTRSRQNVSRVSLVGYTNAGKSTLMNALC 222

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG-IRETDDIVEKEGIKRTFLEVEN 298
            +  A   +    T D  T  L+L+   LV +SDT G IR+    +  E  K T  EV  
Sbjct: 223 PQAEAFAENRLFATLDTKTRRLELKINKLVLLSDTVGFIRKLPHTL-VESFKSTLDEVLQ 281

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG-EGLEE 353
           AD +L + +I+     SF + I  +      D       ++D +I  F   + LEE
Sbjct: 282 ADFLLHVIDISHP---SFEEQIAVV-----RDTLREIGVQHDQIIEVFNKIDALEE 329


>gi|323359833|ref|YP_004226229.1| GTPase [Microbacterium testaceum StLB037]
 gi|323276204|dbj|BAJ76349.1| GTPase [Microbacterium testaceum StLB037]
          Length = 297

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + VAI +D P TTR  +   ++  G  + + DT G
Sbjct: 5   RSGF-VTFVGRPNVGKSTLTNALVGEKVAITSDKPQTTRRAIRGIVNRPGGQLVVVDTPG 63

Query: 277 I 277
           I
Sbjct: 64  I 64


>gi|254421034|ref|ZP_05034758.1| GTP-binding proten HflX [Brevundimonas sp. BAL3]
 gi|196187211|gb|EDX82187.1| GTP-binding proten HflX [Brevundimonas sp. BAL3]
          Length = 437

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 34/174 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I ++G++NAGKS+LFN L   +V    D+   T D     + L +G    ++DT G    
Sbjct: 208 IALVGYTNAGKSTLFNRLTGSEV-FAKDLLFATLDTTQRTIRLPQGRPAIVADTVGF--I 264

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSK-------------KEISFP--KNIDFI 323
            D+  +  E  + T  EV  ADLIL +++I S              K+I  P  K    +
Sbjct: 265 SDLPHELVESFRATLEEVGEADLILHVRDIASADSDAQAKDVETVLKQIETPEGKTRRVL 324

Query: 324 FIGTKSDLYSTYTEE-----YDHL--------ISSFTGEGLEELINKIKSILSN 364
            +  K DL      E      + L        +S++TGEG+E L   I  ++ +
Sbjct: 325 EVWNKIDLLDDEAREAVLGQAERLAKTGEAVAVSAWTGEGIEPLRQTIAGLIDD 378


>gi|188581485|ref|YP_001924930.1| GTP-binding protein Era [Methylobacterium populi BJ001]
 gi|179344983|gb|ACB80395.1| GTP-binding protein Era [Methylobacterium populi BJ001]
          Length = 319

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 32/194 (16%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG- 266
           SQ    +  R G+ + ++G  NAGKS+L NAL    V+IV+    TTR  L   + +EG 
Sbjct: 16  SQETTPQETRAGF-VALIGVPNAGKSTLLNALVGAKVSIVSRKVQTTR-ALVRGIVMEGD 73

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------- 312
             V + DT GI      +++  +   +    +AD + LL  I+++K              
Sbjct: 74  AQVVLVDTPGIFAPKRRLDRAMVHSAWSGAADADAVCLL--IDARKGADDEVETILRRLP 131

Query: 313 EISFPK-----NIDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           E+  PK      ID I     +   + L +    E   LIS+  G+G+ +L    +  L+
Sbjct: 132 EVKRPKILILNKIDLIARERLLELVAKLNAMVPFEDTFLISALNGDGVADL----RKALA 187

Query: 364 NKFKKLPFSIPSHK 377
            +    P+  P  +
Sbjct: 188 ARMPPGPWLYPEDQ 201


>gi|58617284|ref|YP_196483.1| GTP-binding protein Era [Ehrlichia ruminantium str. Gardel]
 gi|81311297|sp|Q5FFN4|ERA_EHRRG RecName: Full=GTPase Era
 gi|58416896|emb|CAI28009.1| GTP-binding protein Era homolog [Ehrlichia ruminantium str. Gardel]
          Length = 296

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 21/154 (13%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G +NAGKS+L N L  + VA VT    TTR  +    + E   +   DT GI      
Sbjct: 13  IVGTTNAGKSTLVNVLVGQKVAAVTPKVQTTRVRMHAVSNHENVQLIFIDTPGIFSPKTK 72

Query: 284 VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSD----- 330
           +EK  +K  ++ ++  + +++L ++ +      KK I   K  N++ I +  K D     
Sbjct: 73  LEKFLVKHAWMSLKGIENVIVLVDVKNYLNQHLKKIIDRIKHSNLNAILVLNKIDIVHQS 132

Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELIN 356
                   +YS Y       IS+  G G+++L++
Sbjct: 133 IVSEVIEYMYSLYKFSKAFTISALYGIGIDKLVD 166


>gi|320100421|ref|YP_004176013.1| small GTP-binding protein [Desulfurococcus mucosus DSM 2162]
 gi|319752773|gb|ADV64531.1| small GTP-binding protein [Desulfurococcus mucosus DSM 2162]
          Length = 695

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++ +G  N GKSS+FN + K  V  V + PG T  V   ++  +GY + + D  GI   
Sbjct: 7   KVLFIGQPNVGKSSIFNMVTKSHVE-VGNWPGKTVAVNKGEVSFKGYKLILYDLPGIYGF 65

Query: 281 DDIVEKEGIKRTFLEVENAD 300
             + ++E + R  + +E  D
Sbjct: 66  TTLTQEELVAREAILLEKPD 85


>gi|66818499|ref|XP_642909.1| hypothetical protein DDB_G0276985 [Dictyostelium discoideum AX4]
 gi|60471024|gb|EAL68994.1| hypothetical protein DDB_G0276985 [Dictyostelium discoideum AX4]
          Length = 743

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-------DLEGYLVKISDT 274
           +  +G SN GKSSL NAL ++ +A  +D PG T+ +   +L       DL GY    +  
Sbjct: 278 VAFIGRSNVGKSSLINALTQRGLAKTSDKPGQTQSINWFELGSTLYLVDLPGYGFAFAKE 337

Query: 275 AGIRETDDIV 284
             + +  DI 
Sbjct: 338 TLVEQWSDIT 347


>gi|293365453|ref|ZP_06612162.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
           ATCC 35037]
 gi|307703409|ref|ZP_07640351.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|322375249|ref|ZP_08049762.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
           C300]
 gi|291315821|gb|EFE56265.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
           ATCC 35037]
 gi|307622816|gb|EFO01811.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|321279512|gb|EFX56552.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
           C300]
          Length = 283

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|282858168|ref|ZP_06267363.1| GTP-binding protein Era [Pyramidobacter piscolens W5455]
 gi|282584090|gb|EFB89463.1| GTP-binding protein Era [Pyramidobacter piscolens W5455]
          Length = 303

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 50/94 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N + K  ++IV+  P TTRD +    +     +   DT GI    
Sbjct: 10  VAVIGRPNVGKSSLLNRILKYKLSIVSAKPQTTRDNILGLYNGAASQILFVDTPGIHAPL 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           + + +  ++R    +E+A+++L +  I+ + E S
Sbjct: 70  NKLGERLVERAVSGLEDANVVLYVVTIDDRPEQS 103


>gi|260913831|ref|ZP_05920305.1| GTP-binding protein HflX [Pasteurella dagmatis ATCC 43325]
 gi|260631918|gb|EEX50095.1| GTP-binding protein HflX [Pasteurella dagmatis ATCC 43325]
          Length = 449

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 92/201 (45%), Gaps = 27/201 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           I ++G++NAGKS+LFNA+ + +V     +  T    L  + L   G  + ++DT G IR 
Sbjct: 224 ISLVGYTNAGKSTLFNAITQANVYAADQLFATLDPTLRRLQLQDVGTTI-LADTVGFIRH 282

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD------LY 332
              D+V     K T  E   A L+L + +    +++     +D + +  K++      +Y
Sbjct: 283 LPHDLV--SAFKSTLQETTEASLLLHVIDCAEPRKLENIAAVDEVLVEIKANEIPILLVY 340

Query: 333 STYTE--------EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +   +        EYD         IS+ +G+G++ L + I+  L N+   L  ++ ++ 
Sbjct: 341 NKIDQLEGVEPHIEYDEENKPNAVYISASSGKGIDLLFDAIRQRLKNEILSLSLTLATYA 400

Query: 378 RHLYHLSQTVRYLEMASLNEK 398
             L H    +  +    +NE+
Sbjct: 401 GKLRHYLYQLDCIRKEDINEQ 421


>gi|227495177|ref|ZP_03925493.1| possible GTP-binding protein HflX [Actinomyces coleocanis DSM
           15436]
 gi|226831629|gb|EEH64012.1| possible GTP-binding protein HflX [Actinomyces coleocanis DSM
           15436]
          Length = 543

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 32/213 (15%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTD 249
           N+I  +K    +     + GEI      + I G++NAGKS+L N L   +V    A+   
Sbjct: 294 NEIAAMKPARDTQRQSRRSGEI----PSVAIAGYTNAGKSTLLNRLTGAEVMVQNALFAT 349

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  T R   T D    G L  ++DT G          E  + T  EV +ADLI+ + +  
Sbjct: 350 LDPTVRQTKTDD----GRLYTLTDTVGFVRNLPTQLVEAFRSTLEEVGDADLIVHVVDAA 405

Query: 310 SKKEISFPKNIDFIF-------------------IGTKSDLYSTYTEEYDHL-ISSFTGE 349
               +   K +  +F                   + T++DL    +   + + +S+ TG 
Sbjct: 406 HPDPMGQIKAVHAVFETIDGAMEIPEIIALNKADLATEADLAVLRSLLPNSVAVSAHTGA 465

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           G+ +L   I  +L     K+   +P     L H
Sbjct: 466 GMGDLQELIAQMLPRPSVKVDVVVPYAHGDLVH 498


>gi|225077528|ref|ZP_03720727.1| hypothetical protein NEIFLAOT_02591 [Neisseria flavescens
           NRL30031/H210]
 gi|284800155|ref|ZP_06390567.1| tRNA modification GTPase TrmE [Neisseria subflava NJ9703]
 gi|224951148|gb|EEG32357.1| hypothetical protein NEIFLAOT_02591 [Neisseria flavescens
           NRL30031/H210]
 gi|284795882|gb|EFC51229.1| tRNA modification GTPase TrmE [Neisseria subflava NJ9703]
          Length = 86

 Score = 42.4 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++ AE+LRLA  +  +ITG    + LL +IFS+FCIGK
Sbjct: 48  IELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 86


>gi|152992113|ref|YP_001357834.1| GTP-binding protein [Sulfurovum sp. NBC37-1]
 gi|151423974|dbj|BAF71477.1| GTP-binding protein [Sulfurovum sp. NBC37-1]
          Length = 464

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETD 281
            ++GH N GKSS+ + LA  D   ++D PGTT    +  L ++G  L ++ DT G +   
Sbjct: 9   AVVGHPNKGKSSIVSTLAFDDTVQISDTPGTTTKKRSFPLTVDGKVLYELFDTPGFQRAR 68

Query: 282 DIV 284
            ++
Sbjct: 69  SVL 71


>gi|104779390|ref|YP_605888.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas
           entomophila L48]
 gi|166225969|sp|Q1IGY1|ENGB_PSEE4 RecName: Full=Probable GTP-binding protein EngB
 gi|95108377|emb|CAK13071.1| putative GTP-binding protein EngB [Pseudomonas entomophila L48]
          Length = 210

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +V N IL L    +  +S  K+ +   + GY++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QVKNPILGLCQKATFALSAAKVEQCPEDQGYEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTRDVLTIDLDLEGYLVKI 271
            PG T+ +    LD E  LV +
Sbjct: 62  TPGRTQLLNFFSLDDERRLVDL 83


>gi|117919051|ref|YP_868243.1| GTP-binding protein, HSR1-related [Shewanella sp. ANA-3]
 gi|117611383|gb|ABK46837.1| GTP-binding protein, HSR1-related [Shewanella sp. ANA-3]
          Length = 435

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 34/227 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFNAL   DV     +  T    L   LDL    V ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNALTSSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDF-----IFIGT 327
             D+V     K T  E   ADL+L + +        N ++  +  ++ID      + +  
Sbjct: 259 PHDLV--AAFKATLQETRQADLLLHIVDCADENMADNFEQVQNVLEDIDAAEVMQLVVCN 316

Query: 328 KSDLYSTYTE--EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           K DL    T   EYD         +S+    G + L+  I  ++     +    IP+   
Sbjct: 317 KIDLLEDVTPRIEYDEHGKPVRVWLSAQKRLGFDLLLKAITELIGEVIHEFTLKIPATAG 376

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419
           H  +L Q  R   +      D G  I++  L      RLA  S G++
Sbjct: 377 H--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDADWRRLAKQSQGEL 421


>gi|164686279|ref|ZP_02210309.1| hypothetical protein CLOBAR_02717 [Clostridium bartlettii DSM
           16795]
 gi|164601881|gb|EDQ95346.1| hypothetical protein CLOBAR_02717 [Clostridium bartlettii DSM
           16795]
          Length = 296

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D P TTR+ +      E   +   DT GI +  
Sbjct: 7   VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDEECQIVFLDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           + + +  +K      +N DL+L + + +SKK
Sbjct: 67  NKLGEFMVKSATDAFKNVDLVLFVVD-DSKK 96


>gi|28493251|ref|NP_787412.1| GTP-binding protein Era [Tropheryma whipplei str. Twist]
 gi|28572637|ref|NP_789417.1| GTP-binding protein Era [Tropheryma whipplei TW08/27]
 gi|81723839|sp|Q83MZ2|ERA_TROWT RecName: Full=GTPase Era
 gi|81723852|sp|Q83NI3|ERA_TROW8 RecName: Full=GTPase Era
 gi|28410769|emb|CAD67155.1| GTP-binding protein [Tropheryma whipplei TW08/27]
 gi|28476292|gb|AAO44381.1| GTP-binding protein Era-like protein [Tropheryma whipplei str.
           Twist]
          Length = 301

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           GY+   I ++G  N GKS+L N+L  + ++I +D P TTR ++   +      + I+DT 
Sbjct: 9   GYRSGIITLVGRPNVGKSTLINSLVGEHLSITSDKPQTTRRIIRGVISRMNAQIAITDTP 68

Query: 276 GIRE 279
           GI +
Sbjct: 69  GIHK 72


>gi|313158000|gb|EFR57406.1| ribosome biogenesis GTPase Era [Alistipes sp. HGB5]
          Length = 293

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NAL  + ++I+T    TTR  +   +  E + +  SDT GI +    
Sbjct: 9   IIGNPNVGKSTLMNALVGEKLSIITSKAQTTRHRIMGIVSGEDFQIVYSDTPGILKPSYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKE 307
           +++  +K     V +AD+IL + +
Sbjct: 69  LQESMMKFVTGAVTDADVILYVTD 92


>gi|293372504|ref|ZP_06618886.1| putative ribosome small subunit-dependent GTPase A [Bacteroides
           ovatus SD CMC 3f]
 gi|292632313|gb|EFF50909.1| putative ribosome small subunit-dependent GTPase A [Bacteroides
           ovatus SD CMC 3f]
          Length = 362

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 18/117 (15%)

Query: 173 EADLDF---SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           ++DLDF   S EE + + S     N I      I    +  +L E I  G  +V +G S 
Sbjct: 160 KSDLDFDRQSVEEQINHIS-----NQIPVFFTSIHQPQTILRLRESISEGETVVFVGSSG 214

Query: 230 AGKSSLFNALAKKDVAIVTDI---PGTTRDVLT----IDLDLEGYLVKISDTAGIRE 279
            GKSSL NAL +K V + +DI    G  R   T    + ++  G L+   DT G+RE
Sbjct: 215 VGKSSLVNALCEKTVLLTSDISLSTGKGRHTSTRREMVLMNDSGVLI---DTPGVRE 268


>gi|169628762|ref|YP_001702411.1| GTP-binding protein Era [Mycobacterium abscessus ATCC 19977]
 gi|169240729|emb|CAM61757.1| GTP-binding protein Era homolog [Mycobacterium abscessus]
          Length = 304

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + VAI ++ P TTR  +   +  E + + + DT G
Sbjct: 7   RSGF-VCFVGRPNTGKSTLTNALVGQKVAITSNRPQTTRHTIRGIVHRENFQIVLVDTPG 65

Query: 277 I 277
           +
Sbjct: 66  L 66


>gi|159469724|ref|XP_001693013.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158277815|gb|EDP03582.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 380

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + ++G  N GKSSL N+L ++ VA V + PG T+ V  + LD     +K+ D+ 
Sbjct: 230 IKTAITVGVVGLPNVGKSSLINSLKRQRVAQVGNTPGVTKSVQEVVLDKH---IKLLDSP 286

Query: 276 GI 277
           G+
Sbjct: 287 GV 288


>gi|322389595|ref|ZP_08063144.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           parasanguinis ATCC 903]
 gi|321143721|gb|EFX39150.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           parasanguinis ATCC 903]
          Length = 286

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 126 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 179


>gi|229825491|ref|ZP_04451560.1| hypothetical protein GCWU000182_00851 [Abiotrophia defectiva ATCC
           49176]
 gi|229790054|gb|EEP26168.1| hypothetical protein GCWU000182_00851 [Abiotrophia defectiva ATCC
           49176]
          Length = 393

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 11/157 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I   G  N GKSSL NA+  +++++V+DI GTT D +   ++L     V I DTAG+ + 
Sbjct: 14  IAFFGLRNVGKSSLVNAVTGQELSVVSDIKGTTTDPVKKAMELLPLGPVVIIDTAGLDDE 73

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSDLY 332
             + +   +K++   ++  D+ +L+ E + +              + I ++    KSDL 
Sbjct: 74  GKLGDLR-VKKSLEILDITDIAVLVTEADRELNELEKELLENFSKRKIPYLIALNKSDLT 132

Query: 333 STYTEEYDH-LISSFTGEGLEELINKIKSILSNKFKK 368
               EE +  L+S+  G  + E   ++  +     +K
Sbjct: 133 ENRKEEENEILVSAKDGTNIYEFKERLAKLFPESKRK 169


>gi|160933846|ref|ZP_02081234.1| hypothetical protein CLOLEP_02708 [Clostridium leptum DSM 753]
 gi|156867723|gb|EDO61095.1| hypothetical protein CLOLEP_02708 [Clostridium leptum DSM 753]
          Length = 396

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 81/168 (48%), Gaps = 18/168 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NA+  ++ A+V+D  GTT D +   +++ G     + DTAG
Sbjct: 10  NRVHIGLYGKRNSGKSSLINAITNQETALVSDFAGTTTDPVYKAMEIHGIGPCMLIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKE---ISFPKNIDFIFIGTKSD 330
             +  ++  +  +++T   +E  D+ +L+   + +  +KE   +   K    + +  K D
Sbjct: 70  FDDEGEL-GRLRVEKTRQALEKTDIAVLVFDGRPVTEEKEWLSLLKQKKTPILAVVNKLD 128

Query: 331 LYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKFKK 368
           L        D           L+S+ T EG++++  ++  +L   +++
Sbjct: 129 LLENPQAYADTLKRDYGLSPVLVSTKTREGIDKVREELIRLLPEDYEQ 176


>gi|116492472|ref|YP_804207.1| GTP-binding protein YqeH [Pediococcus pentosaceus ATCC 25745]
 gi|116102622|gb|ABJ67765.1| Predicted GTPase [Pediococcus pentosaceus ATCC 25745]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R G  + ++G +N GKS+L N+L       KDV   +  PGTT D + I  D    L
Sbjct: 161 EKLRKGRDVYVVGVTNVGKSTLINSLIAIRNGIKDVITTSRFPGTTLDRIEIPFDDHSNL 220

Query: 269 VKISDTAGIRETDDIVE 285
           +   DT GI   D +  
Sbjct: 221 I---DTPGIIHADQMAH 234


>gi|323143742|ref|ZP_08078410.1| GTP-binding protein HflX [Succinatimonas hippei YIT 12066]
 gi|322416455|gb|EFY07121.1| GTP-binding protein HflX [Succinatimonas hippei YIT 12066]
          Length = 454

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 34/179 (18%)

Query: 216 IRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISD 273
           ++N   +V  +G++NAGKS+LFN L K  V     +  T    L T+ LD+ G  V  +D
Sbjct: 195 VKNAVPVVSFVGYTNAGKSTLFNRLTKSAVYEADQLFATLDPTLRTVSLDVVGKAV-FAD 253

Query: 274 TAG-IRE-TDDIVEKEGIKRTFLEVENADLILL------------LKEINSKKEISFPKN 319
           T G IR    D++     K T  E   ADL+L             +K +N+  +      
Sbjct: 254 TVGFIRHLPHDLI--AAFKSTLEETVKADLLLHIIDAADKRVEENIKAVNAVLKQIGADE 311

Query: 320 IDFIFIGTKSDLYSTYTEEYDHL------------ISSFTGEGLEELINKIKSILSNKF 366
           +  + +  K+DL  T    YD +            +S+ TG GL +L++ +  +LS+  
Sbjct: 312 VPTLLVFNKADLLDT---PYDKVVRDETGKPVRVNVSAKTGSGLSDLLSCVSELLSSNL 367


>gi|302390344|ref|YP_003826165.1| GTP-binding proten HflX [Thermosediminibacter oceani DSM 16646]
 gi|302200972|gb|ADL08542.1| GTP-binding proten HflX [Thermosediminibacter oceani DSM 16646]
          Length = 417

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 81/175 (46%), Gaps = 28/175 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVA----IVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           I ++G++NAGKS+L NAL    V+    +   +  TTR +L  D    G  V +SDT G 
Sbjct: 198 ISLVGYTNAGKSTLMNALTGAGVSSNDRLFDTLDPTTRALLLPD----GRRVLLSDTVGF 253

Query: 277 IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPK---------NIDFI 323
           IR+   +IV  E  K T  EV+ ADL++ + + +S K   EIS  K         NI  I
Sbjct: 254 IRKLPHEIV--EAFKATLEEVKEADLLIHVVDASSPKADEEISTVKSVLKEIGAENIPTI 311

Query: 324 FIGTKSDLYS----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               K D  +       EE    IS+  G  L+ L  KI  +L    +     IP
Sbjct: 312 LALNKIDRVNHRELITGEENVVEISALCGTNLDILREKICQLLPQTREHALLCIP 366


>gi|224097032|ref|XP_002310817.1| predicted protein [Populus trichocarpa]
 gi|222853720|gb|EEE91267.1| predicted protein [Populus trichocarpa]
          Length = 414

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + ++G  N GKS+L N +  + ++IVTD P TTR  +        Y + + DT G
Sbjct: 115 RSGY-VAVVGKPNVGKSTLSNQMIGQKLSIVTDKPQTTRHRILGICSAPDYQMILYDTPG 173

Query: 277 IRE 279
           + E
Sbjct: 174 VIE 176


>gi|329770262|ref|ZP_08261651.1| ribosome biogenesis GTPase YqeH [Gemella sanguinis M325]
 gi|328836966|gb|EGF86612.1| ribosome biogenesis GTPase YqeH [Gemella sanguinis M325]
          Length = 372

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + I+G +N GKS+  N L       K+V   +  PGTT  ++ I LD       
Sbjct: 161 LRNGKDVYIIGATNVGKSTFINKLIELTSGDKNVITTSHFPGTTLGMIEIPLD---RATS 217

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           I DT GI    DI         +L+ ++  L++  KEI ++
Sbjct: 218 IYDTPGIILDYDIAH-------YLDAKSLKLVMPKKEIKAR 251


>gi|315425495|dbj|BAJ47157.1| GTP-binding protein HflX [Candidatus Caldiarchaeum subterraneum]
 gi|315427506|dbj|BAJ49109.1| GTP-binding protein HflX [Candidatus Caldiarchaeum subterraneum]
          Length = 412

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 41/209 (19%)

Query: 173 EADLDFSEEEDVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           EAD+ ++E    +  S+ K+ L  I   KN +     +G L  +   GY       +NAG
Sbjct: 147 EADVYYNE--VFRRISTIKQKLKQIRMRKNLVRQRRLEGGLPTVALTGY-------TNAG 197

Query: 232 KSSLFNALAKKD----VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
           K++LFN  + ++      + T +  T R V        G    +SDT G  +    +  E
Sbjct: 198 KTTLFNRFSGEEHPAGPQLFTTLSTTARIV-----KFRGRKAYLSDTVGFIKNLPHLLVE 252

Query: 288 GIKRTFLEVENADLILLLKEINSKKEISFP--------------KNIDFIFIGTKSDLYS 333
               T  E   ADL+LL+ +I+ +K +                 KN+  + +  K D  +
Sbjct: 253 SFHSTLSEFIYADLLLLVVDISEEKSVVESKLNTCLNVLDEVGVKNVPILVVFNKIDSTA 312

Query: 334 TYTE-------EYDHL-ISSFTGEGLEEL 354
            Y E       EY ++ +S++TG+GL+ L
Sbjct: 313 DYREKIESIKPEYRYVAVSAWTGQGLDTL 341


>gi|294790832|ref|ZP_06755990.1| GTP-binding protein Era [Scardovia inopinata F0304]
 gi|294458729|gb|EFG27082.1| GTP-binding protein Era [Scardovia inopinata F0304]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  R+G+ I ++G  N GKS+L N+L  K VAI +  P TTR  +   +  +   + + D
Sbjct: 20  QTFRSGF-IAVVGRPNVGKSTLINSLVGKQVAITSSKPETTRKAIRAIVTRDDCQLVLVD 78

Query: 274 TAGIRETDDIVEK 286
           T GI     ++ K
Sbjct: 79  TPGIHRPRTVLGK 91


>gi|293347429|ref|XP_001067187.2| PREDICTED: RAS and EF-hand domain containing-like [Rattus
           norvegicus]
          Length = 709

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP-GTTRDVLTIDLDLEGYLVKISDTA 275
           +  YKIV+ G +  GKSS    L K +    T    G    + T+ +D E  ++++ DTA
Sbjct: 508 QKAYKIVLAGDAAVGKSSFLMRLCKNEFQGNTSATLGVDFQMKTLMVDGEPTVLQLWDTA 567

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFI 323
           G            I +++     AD +LLL ++  +K            E    +++  +
Sbjct: 568 GQERF------RSIAKSYFR--KADGVLLLYDVTCEKSFLNVREWVAMVEDGTHRSVPIM 619

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            +G K+DL    T E    ISS  GE L
Sbjct: 620 LVGNKADLRDAATAENQKCISSHLGEKL 647


>gi|73662470|ref|YP_301251.1| GTP-binding protein YqeH [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494985|dbj|BAE18306.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 368

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 21/104 (20%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RN   + I+G +N GKS+L N L      +K+V   +  PGTT D++ I LD       
Sbjct: 159 LRNNDDVYIVGTTNVGKSTLINKLIERSVGEKNVVTTSRFPGTTLDMIDIPLD------- 211

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             DT+ + +T  ++++  +     E E       LK I  KKE+
Sbjct: 212 --DTSFMYDTPGVIQEHQMTHYVTEKE-------LKTIMPKKEV 246


>gi|114567081|ref|YP_754235.1| Era, Era/TrmE family GTP-binding protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114338016|gb|ABI68864.1| GTP-binding protein Era, Era/TrmE family [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 293

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G  N GKS+L N +  + +AIV++ P TTR  +      E   V   DT 
Sbjct: 1   MKSGF-VSIVGRPNVGKSTLLNTIIGEKIAIVSEKPQTTRTRIQGIYTCERGQVIFVDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           GI +   ++ +  +K +   +E  D+I  + ++ 
Sbjct: 60  GIHKPKHLLGEYMVKVSARSLEEVDIIYYMTDVT 93


>gi|167772058|ref|ZP_02444111.1| hypothetical protein ANACOL_03432 [Anaerotruncus colihominis DSM
           17241]
 gi|167665856|gb|EDS09986.1| hypothetical protein ANACOL_03432 [Anaerotruncus colihominis DSM
           17241]
          Length = 303

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGI 277
           + I+G  N GKSSL NAL  + VAIV+  P TTR  +T +  D +  LV I DT G+
Sbjct: 15  VAIVGRPNVGKSSLLNALVGEKVAIVSSKPQTTRTRITGVLTDGDTQLVFI-DTPGL 70


>gi|153946878|ref|YP_001399745.1| GTPase [Yersinia pseudotuberculosis IP 31758]
 gi|152958373|gb|ABS45834.1| putative GTPase [Yersinia pseudotuberculosis IP 31758]
          Length = 291

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + +GKSSL NAL + +V  V+D+   TRD L + L    + + + D  G+ E++
Sbjct: 39  IGIMGKTGSGKSSLCNALFQSEVTPVSDVNACTRDTLRLRLSSGVHSLILVDLPGVGESE 98

Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305
               E E + R  L     DLIL +
Sbjct: 99  QRDSEYESLYRNIL--PELDLILWV 121


>gi|227548795|ref|ZP_03978844.1| GTP-binding protein Era [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079125|gb|EEI17088.1| GTP-binding protein Era [Corynebacterium lipophiloflavum DSM 44291]
          Length = 307

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI+ D P TTR  +   ++ E   V + DT G
Sbjct: 13  RSGF-VSFVGRPNTGKSTLTNALVGEKIAIMADQPETTRHPIRGIINREDAQVIVVDTPG 71

Query: 277 I 277
           +
Sbjct: 72  V 72


>gi|241759164|ref|ZP_04757272.1| putative tRNA modification GTPase TrmE [Neisseria flavescens SK114]
 gi|241320583|gb|EER56860.1| putative tRNA modification GTPase TrmE [Neisseria flavescens SK114]
          Length = 145

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++ AE+LRLA  +  +ITG    + LL +IFS+FCIGK
Sbjct: 107 IELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 145


>gi|110004378|emb|CAK98716.1| probable gtp-binding protein era [Spiroplasma citri]
          Length = 294

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDT 274
           I++G+ + I+G  N GKS+L N +    VAIVT    TTR+ +  I  D E  +V   DT
Sbjct: 3   IKSGF-VAIVGRPNVGKSTLLNTILNNKVAIVTAKAQTTRNRIQGIYNDQESQIV-FMDT 60

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            GI +  + + K   K      + AD+IL L   N +
Sbjct: 61  PGIHKAHNEMGKFMNKVALSATKAADVILFLAPANER 97


>gi|21263583|sp|Q8YYD8|ERA_NOSS1 RecName: Full=GTPase Era
          Length = 324

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275
           ++G+ I I+G  N GKS+L N L  + +AI + +  TTR+ L  I    E  L+ + DT 
Sbjct: 31  KSGF-IGIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLRGIVTTPEAQLIFV-DTP 88

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI +    + +  +K   L +E+ D++L +
Sbjct: 89  GIHKPHHQLGEVLVKNAKLAIESVDVVLFV 118


>gi|17228407|ref|NP_484955.1| GTP-binding protein Era [Nostoc sp. PCC 7120]
 gi|17130258|dbj|BAB72869.1| GTP-binding protein [Nostoc sp. PCC 7120]
          Length = 337

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275
           ++G+ I I+G  N GKS+L N L  + +AI + +  TTR+ L  I    E  L+ + DT 
Sbjct: 44  KSGF-IGIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLRGIVTTPEAQLIFV-DTP 101

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI +    + +  +K   L +E+ D++L +
Sbjct: 102 GIHKPHHQLGEVLVKNAKLAIESVDVVLFV 131


>gi|302416193|ref|XP_003005928.1| nucleolar GTP-binding protein [Verticillium albo-atrum VaMs.102]
 gi|261355344|gb|EEY17772.1| nucleolar GTP-binding protein [Verticillium albo-atrum VaMs.102]
          Length = 523

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GKSS+ N L  K VA V  IPG T+    I L    YL+       
Sbjct: 300 RKQISVGLIGYPNVGKSSIVNTLRSKKVATVAPIPGETKVWQYITLTKRIYLIDCPGIVP 359

Query: 277 IRETDDIVEKEGIKRTFLEVENAD 300
             +TD    ++ + R  + VEN D
Sbjct: 360 PSQTD--TPEDILLRGVVRVENVD 381


>gi|171779428|ref|ZP_02920392.1| hypothetical protein STRINF_01273 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282045|gb|EDT47476.1| hypothetical protein STRINF_01273 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 309

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +AIV + PG T+    L  + DLE     I DT GI
Sbjct: 148 RTMIIGIPNAGKSTLMNRLAGKKIAIVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 201


>gi|150399695|ref|YP_001323462.1| small GTP-binding protein [Methanococcus vannielii SB]
 gi|150012398|gb|ABR54850.1| small GTP-binding protein [Methanococcus vannielii SB]
          Length = 184

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 46/185 (24%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS----- 272
           N +KIV++G  N+GKSSL N++  K+++ V+++ GTT+      + ++ +  KI      
Sbjct: 4   NNFKIVLVGPENSGKSSLVNSIFGKNISEVSEVGGTTK------MPVKKFWGKIKIGKQK 57

Query: 273 ---DTAGIRETD-----------DIVEKEGIKRTFLEVENADLIL--------------- 303
              D A I   D            I+    +++T+ E++ +DLI+               
Sbjct: 58  INPDFANITFVDLGGLYFGEKKSVIMVGSVLEKTYEEIDTSDLIIHVVDASTELFKSFEK 117

Query: 304 ---LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI---SSFTGEGLEELINK 357
              LLK    K  I      D I I  + +L     E  D+ +   SS T EG+ EL+  
Sbjct: 118 LHHLLKFRYRKPIIVVINKCDLIDITKRQELQKYVGERLDNKVFFTSSTTYEGISELVGT 177

Query: 358 IKSIL 362
           I  IL
Sbjct: 178 ITEIL 182


>gi|13959364|sp|Q9RDF2|ERA_STRCO RecName: Full=GTPase Era
          Length = 317

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 16/132 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   + G  NAGKS+L NAL  + VAI ++ P TTR  +   +  E   + + DT G
Sbjct: 17  RAGFACFV-GRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHREDAQLILVDTPG 75

Query: 277 IRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIF 324
           + +   ++ +   + ++ T+ EV   D+I      N K         KE++  +    + 
Sbjct: 76  LHKPRTLLGERLNDVVRTTWAEV---DVIGFCLPANEKLGPGDRFIAKELAGIRKTPKVA 132

Query: 325 IGTKSDLYSTYT 336
           I TK+DL  + T
Sbjct: 133 IVTKTDLVDSKT 144


>gi|330752593|emb|CBL87539.1| GTP-binding protein era homolog [uncultured Flavobacteria
           bacterium]
          Length = 295

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 22/227 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+  NAL   D++IVT    TTR  +   ++   + V  SDT GI +  
Sbjct: 12  VSIIGNPNVGKSTFMNALLGLDISIVTPKAQTTRHRILGIVNGHNFQVVFSDTPGIIKPS 71

Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSK-----KEISFPKNIDFIFIG------- 326
             ++   +      +++AD+I+ +   K+ N K      +I   K+  F+ I        
Sbjct: 72  YEMQNSMMNFVKDALKDADIIIYMVTAKDENLKDQKLLNQIKKTKSPLFVLINKIDKSTQ 131

Query: 327 ----TKSDLYST-YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                K   + T +     + IS+  G  + E+ N IK ++ N     P    + K   +
Sbjct: 132 KLVEKKVSYWKTIFPLANVYPISALNGFFISEVFNSIKELIPNSPAYFPKDQITDKPERF 191

Query: 382 HLSQTVRYLEMASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQ 427
            +++++R   +    NE    +++I E  +  S  + KI   + VE+
Sbjct: 192 FVNESIRKQILQRYKNEIPYSVEVITEEFK-ESPKIIKINSVIIVER 237


>gi|315613172|ref|ZP_07888082.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis ATCC 49296]
 gi|315314734|gb|EFU62776.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis ATCC 49296]
          Length = 283

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|307109793|gb|EFN58030.1| hypothetical protein CHLNCDRAFT_20741 [Chlorella variabilis]
          Length = 306

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G  NAGKS+L NAL ++ ++IVT    TTR  +   L   G+     DT GI
Sbjct: 19  VAIIGRPNAGKSTLMNALLQQKLSIVTPKAQTTRHRILGILSEPGFQAVFLDTPGI 74


>gi|167759928|ref|ZP_02432055.1| hypothetical protein CLOSCI_02292 [Clostridium scindens ATCC 35704]
 gi|167662547|gb|EDS06677.1| hypothetical protein CLOSCI_02292 [Clostridium scindens ATCC 35704]
          Length = 406

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 3/58 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGI 277
           I I G  NAGKSS+ NAL  + +AIV+D+ GTT D +   ++L   G +V I DT G+
Sbjct: 14  IGIFGRRNAGKSSIINALTGQSLAIVSDVKGTTTDPVLKAMELLPLGPVVMI-DTPGL 70


>gi|322374823|ref|ZP_08049337.1| ribosome biogenesis GTPase YqeH [Streptococcus sp. C300]
 gi|321280323|gb|EFX57362.1| ribosome biogenesis GTPase YqeH [Streptococcus sp. C300]
          Length = 368

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 158 EYYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGAY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|281491814|ref|YP_003353794.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375528|gb|ADA65038.1| Ribosomal biogenesis GTPase [Lactococcus lactis subsp. lactis
           KF147]
          Length = 282

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
           S+   QWI+     + FI   ++  EE     +++K +    +  K  ++  ++  K   
Sbjct: 65  SNAVAQWIEYFDE-QGFITLAINSKEE-----YTAKRL---TVAAKKLMADKVAHDKERG 115

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I     + +I+G  NAGKS+L N LA K VA+  + PG T+    I  + E   +++ DT
Sbjct: 116 IAHTTLRTMIIGIPNAGKSTLMNRLAGKKVAVTGNRPGVTKGQQWIRTNKE---LELLDT 172

Query: 275 AGI 277
            GI
Sbjct: 173 PGI 175


>gi|224090037|ref|XP_002308915.1| predicted protein [Populus trichocarpa]
 gi|222854891|gb|EEE92438.1| predicted protein [Populus trichocarpa]
          Length = 640

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTD-----IPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  NAGKS+L NALAKK  A VT      +PGTT  +L I   L     K+ DT G
Sbjct: 376 VWVIGAQNAGKSTLINALAKKGGAKVTKLTEAPVPGTTVGILRIGGILSAK-AKMYDTPG 434

Query: 277 I 277
           +
Sbjct: 435 L 435


>gi|197287178|ref|YP_002153050.1| GTPase HflX [Proteus mirabilis HI4320]
 gi|227357127|ref|ZP_03841496.1| GTP-binding protein HflX [Proteus mirabilis ATCC 29906]
 gi|194684665|emb|CAR46603.1| GTP-binding protein [Proteus mirabilis HI4320]
 gi|227162659|gb|EEI47626.1| GTP-binding protein HflX [Proteus mirabilis ATCC 29906]
          Length = 427

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 27/206 (13%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           ++ IL     +     QG+      +   + ++G++NAGKSSLFN +   DV     +  
Sbjct: 171 ISQILMRLGKVERQREQGRQARSKADIPTLSLVGYTNAGKSSLFNRITCADVYAADQLFA 230

Query: 253 TTRDVL-TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL-LLKEI 308
           T    L  I +D  G +V ++DT G IR    D+V     K T  E   A L+L ++   
Sbjct: 231 TLDPTLRRIQVDDVGTVV-LADTVGFIRHLPHDLV--AAFKATLQETREATLLLHVIDAA 287

Query: 309 NSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTG 348
           +S+ E +               I  +++  K DL   +T   D           +S+ TG
Sbjct: 288 DSRFEENIHAVENVLEEIDAHEIPTLYVMNKIDLLEDFTPRIDRNEDNLPVRVWVSAQTG 347

Query: 349 EGLEELINKIKSILSNKFKKLPFSIP 374
           EG+  L   +   LS +   +   +P
Sbjct: 348 EGIPLLYQALTERLSGEIAHVELRLP 373


>gi|147862085|emb|CAN80885.1| hypothetical protein VITISV_016760 [Vitis vinifera]
          Length = 355

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++ I+G  N GKS+L N L +++  +V    G TRD +      +G  V + DTAG
Sbjct: 37  QLAIVGRPNVGKSTLLNTLLQENRVLVGPEAGLTRDSVRAQFQFQGRTVYLVDTAG 92


>gi|21220998|ref|NP_626777.1| GTP-binding protein Era [Streptomyces coelicolor A3(2)]
 gi|256787839|ref|ZP_05526270.1| GTP-binding protein Era [Streptomyces lividans TK24]
 gi|289771724|ref|ZP_06531102.1| GTP-binding protein Era [Streptomyces lividans TK24]
 gi|6714753|emb|CAB66217.1| Era-like GTP-binding protein [Streptomyces coelicolor A3(2)]
 gi|289701923|gb|EFD69352.1| GTP-binding protein Era [Streptomyces lividans TK24]
          Length = 320

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 16/132 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   + G  NAGKS+L NAL  + VAI ++ P TTR  +   +  E   + + DT G
Sbjct: 20  RAGFACFV-GRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHREDAQLILVDTPG 78

Query: 277 IRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIF 324
           + +   ++ +   + ++ T+ EV   D+I      N K         KE++  +    + 
Sbjct: 79  LHKPRTLLGERLNDVVRTTWAEV---DVIGFCLPANEKLGPGDRFIAKELAGIRKTPKVA 135

Query: 325 IGTKSDLYSTYT 336
           I TK+DL  + T
Sbjct: 136 IVTKTDLVDSKT 147


>gi|297821515|ref|XP_002878640.1| EMB2001 [Arabidopsis lyrata subsp. lyrata]
 gi|297324479|gb|EFH54899.1| EMB2001 [Arabidopsis lyrata subsp. lyrata]
          Length = 300

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 31/189 (16%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDV--LTID-----LDLEGY-LVKIS 272
           I ILG SN GKSSL N L  KK+VA+ +  PG T+ +    ++     +DL GY   K+S
Sbjct: 123 IAILGRSNVGKSSLINCLVRKKEVALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKVS 182

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF---IFIGTKS 329
           D A   +TD     +G    FL  +    ILLL + +       P+ ID     ++G ++
Sbjct: 183 DAA---KTDWSAFTKGY---FLNRDTLVCILLLIDASVP-----PQKIDLDCANWLG-RN 230

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS-------HKRHLYH 382
           ++  T+       + +  G+  +E I   + I+   FK  P  I +           L H
Sbjct: 231 NVPMTFVFTKCDKMKAAKGKRPDENIKAFQQIIRENFKVHPPWILTSSVSGLGRDELLLH 290

Query: 383 LSQTVRYLE 391
           +SQ   Y +
Sbjct: 291 MSQLRNYWD 299


>gi|260433544|ref|ZP_05787515.1| GTP-binding protein HflX [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417372|gb|EEX10631.1| GTP-binding protein HflX [Silicibacter lacuscaerulensis ITI-1157]
          Length = 423

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 103/248 (41%), Gaps = 33/248 (13%)

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF-LKND 202
           ++ M  +S + + L   W    TH+              + Q  + +  ++D L  L+  
Sbjct: 127 QVEMAALSYQRTRLVRAW----THLERQRGGLGFVGGPGETQIEADRRAIDDQLVRLRRQ 182

Query: 203 ISSHISQGKLGEIIRN--GYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           +   +    L    R    Y IV L G++NAGKS+LFN L   +V +  D+   T D   
Sbjct: 183 LQKVVKTRTLHRAARAKVPYPIVALVGYTNAGKSTLFNRLTGAEV-MAKDMLFATLDPTM 241

Query: 260 IDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
             ++L +G  V +SDT G             + T  EV  ADLI+ +++I+  +     +
Sbjct: 242 RRIELPDGPEVILSDTVGFISNLPTELVAAFRATLEEVLAADLIVHVRDISHPETEEQAE 301

Query: 319 NIDFIF-------------IGTKSDLYS-------TYTEEYDHL---ISSFTGEGLEELI 355
           ++  I              +  K DL S           E D     IS+ TGEG++ L+
Sbjct: 302 DVRSILASLGVDDTRPQLEVWNKIDLLSDEDRQAVQARAERDPAVFPISAVTGEGIDPLL 361

Query: 356 NKIKSILS 363
            +I +IL 
Sbjct: 362 TEIATILQ 369


>gi|227874779|ref|ZP_03992932.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35243]
 gi|227844554|gb|EEJ54710.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35243]
          Length = 303

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 3/102 (2%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+ + +LG  N GKS+L N +  + +AI +  P TTR V    +   G+ + + D
Sbjct: 12  EDFRAGF-VAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVSRGIVHRPGFQLVLVD 70

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           T GI     ++ +    R  +E   AD+ LL+  + + +EI 
Sbjct: 71  TPGIHRPRTLLGQRLNDR--VEEAQADVDLLVFCVPADQEIG 110


>gi|196037697|ref|ZP_03105008.1| hypothetical protein BC059799_0933 [Bacillus cereus NVH0597-99]
 gi|196031939|gb|EDX70535.1| hypothetical protein BC059799_0933 [Bacillus cereus NVH0597-99]
          Length = 553

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 22/157 (14%)

Query: 219 GYKIVIL--GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           G K VI+  G   AGKSSLFNAL  K+      I  TT   +    +L  Y+  + DT G
Sbjct: 36  GVKPVIINTGLLKAGKSSLFNALCDKEKFKSGVIRTTT---VNKKFELPDYV--LVDTPG 90

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN----SKKEISFPKNIDFIFIGTKSDLY 332
           +   +     E     F   +NAD+I+ +  I     S+ E      I  IF GT   L 
Sbjct: 91  LNANE-----EDTNEAFEGYKNADVIIFVHNIEDGELSRVECDAIHEISSIFQGTDGFLN 145

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           S+       L+ S   +  E  INKIKS++ N+ +K+
Sbjct: 146 SSI------LVLSHADQVEEATINKIKSVIQNQCEKI 176


>gi|331266373|ref|YP_004326003.1| GTP-binding protein, ribosomal biogenesis GTPase [Streptococcus
           oralis Uo5]
 gi|326683045|emb|CBZ00662.1| GTP-binding protein, ribosomal biogenesis GTPase [Streptococcus
           oralis Uo5]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|324993485|gb|EGC25405.1| GTP-binding protein [Streptococcus sanguinis SK405]
 gi|327461756|gb|EGF08087.1| GTP-binding protein [Streptococcus sanguinis SK1]
 gi|327489041|gb|EGF20836.1| GTP-binding protein [Streptococcus sanguinis SK1058]
          Length = 368

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L      
Sbjct: 158 EYCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L  +N      LK I+ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLTAKN------LKYISPKKEIK-PKT 251


>gi|226313197|ref|YP_002773091.1| ribosome biogenesis GTPase [Brevibacillus brevis NBRC 100599]
 gi|226096145|dbj|BAH44587.1| ribosome biogenesis GTPase [Brevibacillus brevis NBRC 100599]
          Length = 297

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 13/88 (14%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           KE+  D+L  +++      +G  G  IR    I+ILG  N GKSSL N L+K+ VA   D
Sbjct: 101 KELAADMLAKRSE------RGMQGRAIR----IMILGIPNVGKSSLINRLSKRSVAATGD 150

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            P  T+    + +   G  +++ DT GI
Sbjct: 151 RPAVTKAQQWVKM---GDTLELLDTPGI 175


>gi|206896503|ref|YP_002247406.1| GTP-binding protein HflX [Coprothermobacter proteolyticus DSM 5265]
 gi|206739120|gb|ACI18198.1| GTP-binding protein HflX [Coprothermobacter proteolyticus DSM 5265]
          Length = 350

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 30/169 (17%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TID------LDLEGY 267
           +RN  ++ I+G++NAGKS+L NA +K      T  P    D +  T+D      L+LEG 
Sbjct: 181 VRNTMQVSIVGYTNAGKSTLLNAFSK------TSKPSYADDKVFATLDTRHRRFLNLEGK 234

Query: 268 LVKISDTAGIRETDDIVEK--EGIKRTFLEVENADLILLLKEINS----KKEISFPKNID 321
            V + DT G    + + EK  +  K T   +  +DLIL + +++S    ++E +  + ++
Sbjct: 235 PVILVDTVGF--VNFMPEKVLDAFKSTLEVIRYSDLILHVIDLSSPIMDEQERTVMRILE 292

Query: 322 --------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                    I +  K DLY     +    +S+  G  L+EL N + S L
Sbjct: 293 ELGAGDRPVIKVYNKLDLYKGPVLQDGISVSALKGTNLDELKNAVVSAL 341


>gi|190575413|ref|YP_001973258.1| GTP-binding protein Era [Stenotrophomonas maltophilia K279a]
 gi|226741239|sp|B2FPX8|ERA_STRMK RecName: Full=GTPase Era
 gi|190013335|emb|CAQ46969.1| putative GTP-binding protein [Stenotrophomonas maltophilia K279a]
          Length = 298

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L NAL    V+IV++ P TTR  +L I    EG LV + DT G+ + 
Sbjct: 12  VAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATYPEGQLV-LVDTPGLHK- 69

Query: 281 DDIVEKEGIKRTF 293
              V+K  + R  
Sbjct: 70  ---VQKRAMNRVM 79


>gi|288560596|ref|YP_003424082.1| ferrous iron transport protein B FeoB1 [Methanobrevibacter
           ruminantium M1]
 gi|288543306|gb|ADC47190.1| ferrous iron transport protein B FeoB1 [Methanobrevibacter
           ruminantium M1]
          Length = 682

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 220 YK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           YK ++++G  N GKS  FN L     A+V++ PGTT D+   +   E   V I+D  G+ 
Sbjct: 31  YKNVLLIGSPNVGKSLTFNKLTGMT-AMVSNYPGTTVDIDEGNFTYENKTVHITDPPGLY 89

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           + + I E+E + +  +  +  DL++
Sbjct: 90  DLNTITEEERVAKLLVLDKRFDLMV 114


>gi|168577175|ref|ZP_02722990.1| GTP-binding protein [Streptococcus pneumoniae MLV-016]
 gi|183577218|gb|EDT97746.1| GTP-binding protein [Streptococcus pneumoniae MLV-016]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|170747912|ref|YP_001754172.1| GTP-binding proten HflX [Methylobacterium radiotolerans JCM 2831]
 gi|170654434|gb|ACB23489.1| GTP-binding proten HflX [Methylobacterium radiotolerans JCM 2831]
          Length = 470

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 82/199 (41%), Gaps = 49/199 (24%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD--------LEGY 267
           R  Y IV L G++NAGKSSLFNAL + +V        T +D+L   LD          G 
Sbjct: 225 RVPYPIVALVGYTNAGKSSLFNALTRAEV--------TAKDMLFATLDPTARATKLPHGE 276

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEI 314
            V +SDT G             + T  +   AD++L +++++               +E+
Sbjct: 277 TVILSDTVGFISDLPTPLIAAFRATLEDAIEADVLLHVRDVSHVDSEAQAEDVGAVLREL 336

Query: 315 SFPKNIDFIF-IGTKSDL--------------YSTYTEEYDH----LISSFTGEGLEELI 355
               + D I  +  K+DL               +    + D     L+S+ TGEGL  L 
Sbjct: 337 GIETSADRIIEVWNKADLLDDDERTRLLNLSGQARARNDRDSAAPVLVSALTGEGLAALT 396

Query: 356 NKIKSILSNKFKKLPFSIP 374
           ++I++ +         ++P
Sbjct: 397 SRIEARVGRNRASFAVALP 415


>gi|75910714|ref|YP_325010.1| GTP-binding protein Era [Anabaena variabilis ATCC 29413]
 gi|75704439|gb|ABA24115.1| Small GTP-binding protein [Anabaena variabilis ATCC 29413]
          Length = 337

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275
           ++G+ I I+G  N GKS+L N L  + +AI + +  TTR+ L  I    E  L+ + DT 
Sbjct: 44  KSGF-IGIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLRGIVTTPEAQLIFV-DTP 101

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI +    + +  +K   L +E+ D++L +
Sbjct: 102 GIHKPHHQLGEVLVKNAKLAIESVDVVLFV 131


>gi|71907415|ref|YP_285002.1| GTP-binding [Dechloromonas aromatica RCB]
 gi|71847036|gb|AAZ46532.1| GTP-binding protein [Dechloromonas aromatica RCB]
          Length = 307

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           +++I+G  N GKS+L NAL KK VA V D P  T+    ID+
Sbjct: 118 RLMIMGIPNVGKSTLMNALVKKKVAAVGDQPAVTKSQQRIDI 159


>gi|325696992|gb|EGD38879.1| GTP-binding protein [Streptococcus sanguinis SK160]
          Length = 368

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L      
Sbjct: 158 EYCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L  +N      LK I+ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLTAKN------LKYISPKKEIK-PKT 251


>gi|306836304|ref|ZP_07469285.1| GTP-binding protein HflX [Corynebacterium accolens ATCC 49726]
 gi|304567824|gb|EFM43408.1| GTP-binding protein HflX [Corynebacterium accolens ATCC 49726]
          Length = 502

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 27/180 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           +I I G++NAGKSSL NA+    V +V D    T D  T    L +G  V  +DT G   
Sbjct: 275 QIAIAGYTNAGKSSLINAMTNAGV-LVEDALFATLDPTTRRASLADGRQVVFTDTVGFVR 333

Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF----------PKNI 320
                  E  K T  EV  AD++L          LK+I +  ++ +          P  I
Sbjct: 334 HLPTQLVEAFKSTLEEVLAADIMLHVVDGSDPFPLKQIEAVNKVIYDIVSETGEQAPPEI 393

Query: 321 DFIFIGTKSD--LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             I    ++D  + +      DH     +S+ TGEG++EL  +++  L+++   +   +P
Sbjct: 394 IVINKIDQADPLVLAELRHVLDHEDVVYVSARTGEGIDELSARVELFLNSRDSHVKLQVP 453


>gi|304438431|ref|ZP_07398371.1| GTP-binding protein Era [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368514|gb|EFM22199.1| GTP-binding protein Era [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 298

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NAL  + +AI++D P TTR  +   L  +   +   DT GI +  
Sbjct: 9   VAVVGRPNVGKSTLINALIGQKIAIMSDKPQTTRSRILCILTEKDAQIIFLDTPGIHKPQ 68

Query: 282 D 282
           D
Sbjct: 69  D 69


>gi|257064001|ref|YP_003143673.1| GTP-binding protein Era [Slackia heliotrinireducens DSM 20476]
 gi|256791654|gb|ACV22324.1| GTP-binding protein Era [Slackia heliotrinireducens DSM 20476]
          Length = 301

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +    ++G+ + ++G  NAGKS+L NA+    VAI ++   TTR   +  +  +   + +
Sbjct: 1   MAHTFKSGF-VTLVGRPNAGKSTLINAVVGHKVAITSNTAQTTRHRFSAIVTRDDMQIIM 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            DT G+ +  D + +E        +E+ D++ +L
Sbjct: 60  VDTPGLHKPHDALGQELNTSAIKAMEDVDVVAML 93


>gi|257784166|ref|YP_003179383.1| small GTP-binding protein [Atopobium parvulum DSM 20469]
 gi|257472673|gb|ACV50792.1| small GTP-binding protein [Atopobium parvulum DSM 20469]
          Length = 194

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 33/168 (19%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTID------LDLEGY-LVKIS 272
           ++  +G SN GKSSL N L  +K +A V+ +PG T ++   D      +DL GY   ++S
Sbjct: 27  EVAFVGRSNVGKSSLLNKLIGRKQLARVSSVPGKTANINFFDVDGVKFVDLPGYGFARVS 86

Query: 273 DTAGIRETDDIVEKEGIKRTF------LEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
                R  D I      +R+F      +++ +    L L+ IN  +E   P    F+   
Sbjct: 87  RQEKQRWADLIGGYFEQERSFNLVISLVDIRHEAQKLDLQMINFLQEAELP----FVVAF 142

Query: 327 TKSD-------------LYSTY--TEEYDHLISSFTGEGLEELINKIK 359
           TK+D             L   +  T E   + SS TG G++EL  +I+
Sbjct: 143 TKADKIARGKQNQAAAALRKAFHITPEQTIITSSETGLGIDELRRRIE 190


>gi|254519865|ref|ZP_05131921.1| GTP-binding protein Era [Clostridium sp. 7_2_43FAA]
 gi|226913614|gb|EEH98815.1| GTP-binding protein Era [Clostridium sp. 7_2_43FAA]
          Length = 296

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 3/100 (3%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ + I+G  N GKS+L N +  + ++IV++ P TTR+ +   L  + + +   DT
Sbjct: 1   MFKSGF-VTIVGRPNVGKSTLLNHIMGEKLSIVSNKPQTTRNNIQTILTGKDHQLVFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
            GI +    + +  +      ++  DL+L L  IN ++EI
Sbjct: 60  PGIHKPKHKLGEYMVNSAKDSIKEVDLVLFL--INPEEEI 97


>gi|170104264|ref|XP_001883346.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164641799|gb|EDR06058.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 562

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 22/156 (14%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
           W+  L H    +      S +    N SS    + +  LK        + K G +     
Sbjct: 151 WLKHLRHSTPTLPFLSSASSQHQRTNISSSTAPSLLKLLK------AYKPKAGSVT---- 200

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-E 279
            + ++G+ N GKSSL N+L +  V  V   PG T+D+ ++ L+     ++I D+ G+  +
Sbjct: 201 -VGVVGYPNVGKSSLINSLKRSKVCAVAAQPGHTKDLQSVQLE---RGMRIIDSPGVVFD 256

Query: 280 TDDIVEKEGIK------RTFLEVENA-DLILLLKEI 308
            DD ++ +  K      R  ++VE+  D I +++EI
Sbjct: 257 EDDFIDGKSEKKSSVLLRNVVKVEDVEDPIAVVEEI 292


>gi|120437448|ref|YP_863134.1| HflX-like GTP-binding protein [Gramella forsetii KT0803]
 gi|117579598|emb|CAL68067.1| HflX-like GTP-binding protein [Gramella forsetii KT0803]
          Length = 407

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 18/127 (14%)

Query: 192 VLNDILFLKN-----DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-- 244
           V + I  LKN     D    + +G  G+++R    + ++G++N GKS+L N ++K DV  
Sbjct: 171 VRDKISLLKNKLKVIDKQMEVQRGNRGQLVR----VALVGYTNVGKSTLMNVISKSDVFA 226

Query: 245 --AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T R V+  +L        +SDT G          E  K T  EV  ADL+
Sbjct: 227 ENKLFATLDTTVRKVVIRNLPF-----LLSDTVGFIRKLPTQLVESFKSTLDEVREADLL 281

Query: 303 LLLKEIN 309
           L + +I+
Sbjct: 282 LHVVDIS 288


>gi|159184589|ref|NP_354059.2| GTP-binding protein Era [Agrobacterium tumefaciens str. C58]
 gi|159139891|gb|AAK86844.2| GTP-binding protein, Era family [Agrobacterium tumefaciens str.
           C58]
          Length = 313

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G +NAGKS+L N L    V+IV+    TTR V+      +   +   DT G
Sbjct: 19  RSGF-VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAVMRGIAIHKNAQIVFMDTPG 77

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +    +++  +   +   ++ADLILLL
Sbjct: 78  IFKPRRRLDRAMVTSAWGGAKDADLILLL 106


>gi|145220518|ref|YP_001131227.1| ferrous iron transport protein B [Prosthecochloris vibrioformis DSM
           265]
 gi|145206682|gb|ABP37725.1| ferrous iron transport protein B [Chlorobium phaeovibrioides DSM
           265]
          Length = 709

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G+ N GKSSLFNAL       V + PG T +      D  GY +++ D  G     
Sbjct: 6   VALAGNPNCGKSSLFNALTGAHQK-VGNFPGVTIEKYEGHCDFGGYRIRVVDLPGTYSLT 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
               +E + R +L  E  D+++
Sbjct: 65  PYSPEEIVTRQYLIEERPDVVV 86


>gi|284929634|ref|YP_003422156.1| GTP-binding protein Era [cyanobacterium UCYN-A]
 gi|284810078|gb|ADB95775.1| GTP-binding protein Era [cyanobacterium UCYN-A]
          Length = 314

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 23/162 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I I+G  N GKS++ N L  + + I +++  TTR+ L   L  +   +   DT G
Sbjct: 21  RSGF-IGIIGRPNVGKSTIMNQLIGQKIVITSNVSQTTRNRLKGILTTDTEQMIFVDTPG 79

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNID-FIFIG-TK 328
           I +    + K  +K   + + + D+ILL+ + ++         I+  KN D  + +G  K
Sbjct: 80  IHKPHHNLGKIIVKNAKITINSVDIILLVVDSSTLSGGGDHYIINLLKNTDKTVIVGLNK 139

Query: 329 SDLYSTYTEEYD----HLI----------SSFTGEGLEELIN 356
           SD  +   EE D    +LI          S+ T EGL  L N
Sbjct: 140 SDKQTVKHEELDASYLNLIKEYKWPIVKFSALTKEGLGNLQN 181


>gi|194366746|ref|YP_002029356.1| GTP-binding protein Era [Stenotrophomonas maltophilia R551-3]
 gi|226741238|sp|B4SRK9|ERA_STRM5 RecName: Full=GTPase Era
 gi|194349550|gb|ACF52673.1| GTP-binding protein Era [Stenotrophomonas maltophilia R551-3]
          Length = 298

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L NAL    V+IV++ P TTR  +L I    EG LV + DT G+ + 
Sbjct: 12  VAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATYPEGQLVLV-DTPGLHK- 69

Query: 281 DDIVEKEGIKRTF 293
              V+K  + R  
Sbjct: 70  ---VQKRAMNRVM 79


>gi|312380982|gb|EFR26839.1| hypothetical protein AND_06802 [Anopheles darlingi]
          Length = 645

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 17/114 (14%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R   ++ ++G  N GKSSL N+L +K   +V   PG T+ +  + +D     VK+ D+ 
Sbjct: 305 LRTSIRVGVVGLPNVGKSSLVNSLKRKRACMVGAKPGVTKQMQEVQIDSH---VKLLDSP 361

Query: 276 GIRETDDIVE--KEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT 327
           GI     + +  KE  +  F  + NA  +  +++        FP   D +  GT
Sbjct: 362 GI-----VFQRPKEQDQNRFFALRNAQKVTEIQD-------PFPLAADILKRGT 403


>gi|253573502|ref|ZP_04850845.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251847030|gb|EES75035.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 287

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            LK  I   I++G    I     + +I+G  N GKS+L N LA + +A   D PG T+  
Sbjct: 103 LLKERIEKQIAKG----IKPRAVRALIVGIPNVGKSTLINGLAGRKIAATGDRPGVTKGQ 158

Query: 258 LTIDLDLEGYLVKISDTAGI 277
             I +  E   +++ DT GI
Sbjct: 159 QWIKVGTE---MELLDTPGI 175


>gi|237755977|ref|ZP_04584563.1| GTP-binding protein HflX [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691860|gb|EEP60882.1| GTP-binding protein HflX [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 372

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT--TRDVLTIDLDLEGYLVKISDTA 275
           N  K+ ++G++NAGKSSL   L K+DV I   +  T  T+  L    D+E  ++ I+DT 
Sbjct: 192 NILKVSLVGYTNAGKSSLLKRLTKRDVFISDQLFATLDTKTSLIYFPDIEKKVL-ITDTV 250

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           G  E       +    T  E+E+AD+IL + +I+ K
Sbjct: 251 GFVEDMPSEIMDAFMTTLKEIEDADVILHVIDISDK 286


>gi|226941245|ref|YP_002796319.1| ThiH [Laribacter hongkongensis HLHK9]
 gi|226716172|gb|ACO75310.1| ThiH [Laribacter hongkongensis HLHK9]
          Length = 883

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I + G  NAGKSS FNAL  ++ AIV+  PG+T D +    +L  +  V   DTAG+ + 
Sbjct: 483 IGLFGCRNAGKSSWFNALTGQERAIVSARPGSTTDPVEKAYELLPFGPVLFVDTAGLDDE 542

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            ++     +++T   +   DL++LL
Sbjct: 543 GELGMLR-VQKTRAVLARVDLVVLL 566


>gi|225850090|ref|YP_002730324.1| GTPase, MMR1/HSR1 family [Persephonella marina EX-H1]
 gi|225644792|gb|ACO02978.1| GTPase, MMR1/HSR1 family [Persephonella marina EX-H1]
          Length = 259

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           KI +LG+ N GKSS+ N L  K VA  +  PG TR    + L    +L+   DT GI
Sbjct: 109 KIGVLGYPNVGKSSVINKLKGKKVATTSPKPGMTRGEQLVKLAPNVFLI---DTPGI 162


>gi|85860146|ref|YP_462348.1| GTP-binding protein [Syntrophus aciditrophicus SB]
 gi|123738843|sp|Q2LVR8|ERA_SYNAS RecName: Full=GTPase Era
 gi|85723237|gb|ABC78180.1| GTP-binding protein [Syntrophus aciditrophicus SB]
          Length = 306

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 87/202 (43%), Gaps = 22/202 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           S G    + ++G+ I I+G  N GKS+L N +  + +AI+T  P TTR+ +    + +  
Sbjct: 5   SSGGCSIMFKSGF-IGIIGRPNVGKSTLLNGILGEKLAIITHKPQTTRNRIMGIRNADNA 63

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKE-- 313
                DT GI      + +  ++       ++D++LL+ E            I S KE  
Sbjct: 64  QFIFVDTPGIHSASTPLNRLMVRTATETFTDSDILLLVVEAGQAVHPEDLPIIESLKESG 123

Query: 314 -ISF--PKNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKF 366
            ISF     ID I       L   Y   +       IS+ TGEG+  L++++   L    
Sbjct: 124 TISFLILNKIDLIRKEQLLPLMDAYRNLHSFAELIPISALTGEGIPLLLDELWKYLPEGP 183

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
           +  P  + + +   +  ++ +R
Sbjct: 184 QYFPDDMMTDQSERFLAAEIIR 205


>gi|18400109|ref|NP_565543.1| EMB2001 (embryo defective 2001); GTP binding [Arabidopsis thaliana]
 gi|21903474|sp|O81004|Y2287_ARATH RecName: Full=GTP-binding protein At2g22870; AltName: Full=Protein
           EMBRYO DEFECTIVE 2001
 gi|20197273|gb|AAC32434.2| putative nucleotide-binding protein [Arabidopsis thaliana]
 gi|21592880|gb|AAM64830.1| putative nucleotide-binding protein [Arabidopsis thaliana]
 gi|52354269|gb|AAU44455.1| hypothetical protein AT2G22870 [Arabidopsis thaliana]
 gi|55740571|gb|AAV63878.1| hypothetical protein At2g22870 [Arabidopsis thaliana]
 gi|330252273|gb|AEC07367.1| GTP-binding protein [Arabidopsis thaliana]
          Length = 300

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 31/189 (16%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDV--LTID-----LDLEGY-LVKIS 272
           I ILG SN GKSSL N L  KK+VA+ +  PG T+ +    ++     +DL GY   K+S
Sbjct: 123 IAILGRSNVGKSSLINCLVRKKEVALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKVS 182

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF---IFIGTKS 329
           D A   +TD     +G    FL  ++   +LLL + +       P+ ID     ++G ++
Sbjct: 183 DAA---KTDWSAFTKGY---FLNRDSLVCVLLLIDASVP-----PQKIDLDCANWLG-RN 230

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS-------HKRHLYH 382
           ++  T+       + +  G+  +E I   + I+   FK  P  I +           L H
Sbjct: 231 NVPMTFVFTKCDKMKATKGKRPDENIKAFQQIIRENFKVHPPWILTSSVSGLGRDELLLH 290

Query: 383 LSQTVRYLE 391
           +SQ   Y +
Sbjct: 291 MSQLRNYWD 299


>gi|332075089|gb|EGI85560.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17545]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|307312946|ref|ZP_07592574.1| GTP-binding protein HSR1-related protein [Escherichia coli W]
 gi|306907114|gb|EFN37621.1| GTP-binding protein HSR1-related protein [Escherichia coli W]
 gi|315063585|gb|ADT77912.1| Predicted GTPase [Escherichia coli W]
 gi|323380334|gb|ADX52602.1| GTP-binding protein HSR1-related protein [Escherichia coli KO11]
          Length = 337

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           I ++G + AGKSS+ NAL K +V  V+D+   TR+V  + +    + +KI D  G+ E 
Sbjct: 82  IGVMGKTGAGKSSVCNALFKGEVCAVSDVEACTREVQELRIRFGKHSLKIIDIPGVGEN 140


>gi|193214735|ref|YP_001995934.1| small GTP-binding protein [Chloroherpeton thalassium ATCC 35110]
 gi|193088212|gb|ACF13487.1| small GTP-binding protein [Chloroherpeton thalassium ATCC 35110]
          Length = 383

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +L ++     K+ + G +  GKSSL NAL  +D+  ++DI   TR    I L + G  +K
Sbjct: 51  RLNQVRNYEPKVGVFGKTGVGKSSLCNALFGQDICEISDIKACTRKPQEILLSIGGRGLK 110

Query: 271 ISDTAGIRETDD 282
           + D  G+ E+ +
Sbjct: 111 LLDVPGVGESSE 122


>gi|168486443|ref|ZP_02710951.1| GTP-binding protein [Streptococcus pneumoniae CDC1087-00]
 gi|182684111|ref|YP_001835858.1| GTP-binding protein [Streptococcus pneumoniae CGSP14]
 gi|303255771|ref|ZP_07341813.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae BS455]
 gi|303260562|ref|ZP_07346528.1| GTP-binding protein [Streptococcus pneumoniae SP-BS293]
 gi|303262696|ref|ZP_07348635.1| GTP-binding protein [Streptococcus pneumoniae SP14-BS292]
 gi|303265231|ref|ZP_07351142.1| GTP-binding protein [Streptococcus pneumoniae BS397]
 gi|303266994|ref|ZP_07352868.1| GTP-binding protein [Streptococcus pneumoniae BS457]
 gi|303269264|ref|ZP_07355039.1| GTP-binding protein [Streptococcus pneumoniae BS458]
 gi|182629445|gb|ACB90393.1| GTP-binding protein [Streptococcus pneumoniae CGSP14]
 gi|183570532|gb|EDT91060.1| GTP-binding protein [Streptococcus pneumoniae CDC1087-00]
 gi|301801975|emb|CBW34703.1| putative GTPase protein [Streptococcus pneumoniae INV200]
 gi|302597283|gb|EFL64387.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae BS455]
 gi|302636128|gb|EFL66624.1| GTP-binding protein [Streptococcus pneumoniae SP14-BS292]
 gi|302638275|gb|EFL68744.1| GTP-binding protein [Streptococcus pneumoniae SP-BS293]
 gi|302641221|gb|EFL71593.1| GTP-binding protein [Streptococcus pneumoniae BS458]
 gi|302643474|gb|EFL73747.1| GTP-binding protein [Streptococcus pneumoniae BS457]
 gi|302645202|gb|EFL75438.1| GTP-binding protein [Streptococcus pneumoniae BS397]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|332519776|ref|ZP_08396240.1| GTP-binding protein Era [Lacinutrix algicola 5H-3-7-4]
 gi|332044335|gb|EGI80529.1| GTP-binding protein Era [Lacinutrix algicola 5H-3-7-4]
          Length = 293

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + V +SDT GI +    
Sbjct: 10  IIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGENFQVVLSDTPGIIKPAYE 69

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKK 312
           ++   +       ++ADL++ + EI  K+
Sbjct: 70  LQASMMDFVKSAFDDADLLIYMVEIGEKE 98


>gi|317374939|sp|Q8EW66|ERA_MYCPE RecName: Full=GTPase Era
          Length = 298

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 2/60 (3%)

Query: 220 YKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGI 277
           Y IV I+G  N GKS+L N + +++V I ++ P TTR+++ I  D +E  ++   DT G+
Sbjct: 3   YGIVSIVGKPNVGKSTLLNNIFEREVVISSNKPQTTRNMIEISYDSIEDCVINFIDTPGL 62


>gi|291533667|emb|CBL06780.1| small GTP-binding protein domain [Megamonas hypermegale ART12/1]
          Length = 158

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKSS+ NAL  +++A+V+ + GTT D +   ++L     V I DTAG
Sbjct: 10  NRTHIAFFGIRNAGKSSIMNALTNQNIAVVSPVKGTTTDPVHKAMELLPLGPVNIIDTAG 69

Query: 277 IRETDDIVE--KEGIKRTFLEVENADLILLL 305
               DDI E  K  I++T   +   D+ +L+
Sbjct: 70  F---DDIGELGKLRIEKTKQILNKTDIAILV 97


>gi|290997832|ref|XP_002681485.1| nucleostemin family protein [Naegleria gruberi]
 gi|284095109|gb|EFC48741.1| nucleostemin family protein [Naegleria gruberi]
          Length = 769

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
            E I+    + I+G+ N GKSS+ N+L ++ VA+V   PG T     I LD     +K+ 
Sbjct: 523 SEDIKKSISVGIIGYPNVGKSSVINSLKRQRVAVVGSRPGVTTCAKEIQLDSN---IKLI 579

Query: 273 DTAGI 277
           D+ GI
Sbjct: 580 DSPGI 584


>gi|167522240|ref|XP_001745458.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776416|gb|EDQ90036.1| predicted protein [Monosiga brevicollis MX1]
          Length = 469

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 211 KLGEIIR-NGYKIVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           KL E+ +  G  +V +G SNAGKS+L NA L+    A V+  PGTT+ +   +L L+  +
Sbjct: 230 KLAELAQERGQALVFIGCSNAGKSALINAVLSGPQRATVSPTPGTTQALQEYELILDQRV 289

Query: 269 VKISDTAGIRETDDIVEK-EGIKR 291
            ++   + +   +  VE   G KR
Sbjct: 290 PRLRTVSRVAHAELAVEHLAGTKR 313


>gi|150021239|ref|YP_001306593.1| small GTP-binding protein [Thermosipho melanesiensis BI429]
 gi|149793760|gb|ABR31208.1| small GTP-binding protein [Thermosipho melanesiensis BI429]
          Length = 396

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  N GKSS  NAL  ++V+IV+++ GTT D +   ++L     + + DT G+   
Sbjct: 11  IAITGRRNVGKSSFMNALIGQEVSIVSNVAGTTTDPVFKSMELSPVGPITLIDTPGL--- 67

Query: 281 DDIVEKEGIKR 291
           DD+ E  GIKR
Sbjct: 68  DDVGEL-GIKR 77


>gi|150395907|ref|YP_001326374.1| GTP-binding protein Era [Sinorhizobium medicae WSM419]
 gi|189037667|sp|A6U7A9|ERA_SINMW RecName: Full=GTPase Era
 gi|150027422|gb|ABR59539.1| GTP-binding protein Era [Sinorhizobium medicae WSM419]
          Length = 310

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 83/181 (45%), Gaps = 30/181 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT G
Sbjct: 17  RSGF-VALIGATNAGKSTLINRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPG 75

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNI---- 320
           I +    +++  +   +   ++ADLI+LL +            +   K++  PK +    
Sbjct: 76  IFKPRRRLDRAMVTTAWGGAKDADLIMLLIDSERGIKGDADTILEGLKDVHQPKVLVLNK 135

Query: 321 -------DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                  D + +   ++    +  E   +IS+ TG G E++++     L+ +  + P+  
Sbjct: 136 VDQVRREDLLKLAAAANEVVAF--ERTFMISALTGSGCEDVMD----YLAERLPEGPWYY 189

Query: 374 P 374
           P
Sbjct: 190 P 190


>gi|307354857|ref|YP_003895908.1| small GTP-binding protein [Methanoplanus petrolearius DSM 11571]
 gi|307158090|gb|ADN37470.1| small GTP-binding protein [Methanoplanus petrolearius DSM 11571]
          Length = 620

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G+ N GKS +FN L    V I ++ PGTT D+L+ ++  +   +++ D  GI   
Sbjct: 2   KFALIGNPNVGKSLIFNQLTGIGVEI-SNFPGTTIDMLSGNVCYQRERLELIDFPGIYSL 60

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +   E+E   R++L   N D ++++
Sbjct: 61  EGKTEEEEQVRSYLRTNNIDALIVV 85


>gi|149006185|ref|ZP_01829897.1| GTP-binding protein [Streptococcus pneumoniae SP18-BS74]
 gi|194398607|ref|YP_002037767.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae G54]
 gi|307127248|ref|YP_003879279.1| GTP-binding protein [Streptococcus pneumoniae 670-6B]
 gi|147761962|gb|EDK68924.1| GTP-binding protein [Streptococcus pneumoniae SP18-BS74]
 gi|194358274|gb|ACF56722.1| GTP-binding protein [Streptococcus pneumoniae G54]
 gi|306484310|gb|ADM91179.1| GTP-binding protein [Streptococcus pneumoniae 670-6B]
 gi|332076293|gb|EGI86759.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41301]
 gi|332200481|gb|EGJ14553.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41317]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|56962534|ref|YP_174260.1| GTPase [Bacillus clausii KSM-K16]
 gi|56908772|dbj|BAD63299.1| GTPase [Bacillus clausii KSM-K16]
          Length = 420

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 20/172 (11%)

Query: 222 IVILGHSNAGKSSLFNAL---AKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAG 276
           + ++G++NAGKSSL NA+   A++      D+   T D  V  ++LD + + V ++DT G
Sbjct: 201 VALVGYTNAGKSSLMNAMLDNAEEKRVFEKDMLFATLDTSVRKVELD-KNHSVLLADTVG 259

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-----------FIFI 325
                     +  + T  E   ADL+L + + ++++     K  +            I++
Sbjct: 260 FVSKLPTHLVKAFRSTLEEAREADLLLHVVDYSNERHREMAKTTNETLQAMEIDRPMIYV 319

Query: 326 GTKSD-LYSTYTEEY-DHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             K D L   + + + D L IS+ T +GL+ L  KI S +    +K  F +P
Sbjct: 320 YNKMDRLKEAFPQAHGDELFISAKTKQGLDLLAQKIASYVFQDLEKHLFIVP 371


>gi|322385536|ref|ZP_08059180.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           cristatus ATCC 51100]
 gi|321270274|gb|EFX53190.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           cristatus ATCC 51100]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +AIV + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAIVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|297626088|ref|YP_003687851.1| GTP-binding protein [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921853|emb|CBL56413.1| GTP-binding protein [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 316

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 13/128 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTA 275
           R+G+ +  +G  NAGKS+L NAL    +AI +  P TTR  +   L   +G L+ I DT 
Sbjct: 15  RSGF-VCFVGRPNAGKSTLTNALVGSKIAITSSKPQTTRHAVRGVLHRADGQLI-IIDTP 72

Query: 276 GIRETDDIVEK---EGIKRTFLEVENADLILLLKEINSKKEI-------SFPKNIDFIFI 325
           G+ +   ++++   + ++ T+ EV+   L+    E     +I          K    + I
Sbjct: 73  GLSKPRSLLQQRLNDLVRSTWSEVDVVALVFPADEHIGPGDIYLATQLAELAKPPTLVAI 132

Query: 326 GTKSDLYS 333
            TK+DL S
Sbjct: 133 VTKTDLVS 140


>gi|304317714|ref|YP_003852859.1| ferrous iron transporter B [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779216|gb|ADL69775.1| ferrous iron transport protein B [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 596

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 10/83 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIRET 280
           ++G+ N GK++LFN L   +   V + PG T +        EG++   VK+ D  GI   
Sbjct: 6   LIGNPNVGKTTLFNLLTGSNQH-VGNWPGVTVE------KKEGFVSENVKLVDLPGIYAM 58

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D    +E I + FLE  + DLIL
Sbjct: 59  DTYSNEEKISKAFLESGDVDLIL 81


>gi|154149133|ref|YP_001406037.1| ferrous iron transport protein B [Campylobacter hominis ATCC
           BAA-381]
 gi|153805142|gb|ABS52149.1| ferrous iron transport protein B [Campylobacter hominis ATCC
           BAA-381]
          Length = 700

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+  +G  N GKS L N + K ++  V +  G T +     L  E Y +KI D  G    
Sbjct: 5   KVAFVGQPNVGKSLLVNTICKANMH-VGNFAGVTVEKAEAALVFENYKIKIIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
               ++E I R FLE    DLI+
Sbjct: 64  HGYSKEEKITRNFLENGEYDLIV 86


>gi|306833476|ref|ZP_07466603.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus bovis
           ATCC 700338]
 gi|304424246|gb|EFM27385.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus bovis
           ATCC 700338]
          Length = 284

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 12/108 (11%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG-----YKIVILGHSNAG 231
           ++ E++ ++  +        + L  D +  +   KL ++   G      + +I+G  NAG
Sbjct: 74  NYFEKQGIKTLAVNSKEQATVKLVTDAAKSLMADKLAKLRERGIQKETLRTMIIGIPNAG 133

Query: 232 KSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           KS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 134 KSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|270290433|ref|ZP_06196658.1| ribosome biogenesis GTPase YqeH [Pediococcus acidilactici 7_4]
 gi|270281214|gb|EFA27047.1| ribosome biogenesis GTPase YqeH [Pediococcus acidilactici 7_4]
          Length = 369

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R G  + ++G +N GKS+L N+L       KDV   +  PGTT D + I  D     
Sbjct: 160 EQLRGGRDVYVVGVTNVGKSTLINSLIALRNGIKDVITTSRFPGTTLDRIEIPFDDHS-- 217

Query: 269 VKISDTAGIRETDDIVE 285
            K+ DT GI   D +  
Sbjct: 218 -KMIDTPGIVHNDQMAH 233


>gi|269120182|ref|YP_003308359.1| small GTP-binding protein [Sebaldella termitidis ATCC 33386]
 gi|268614060|gb|ACZ08428.1| small GTP-binding protein [Sebaldella termitidis ATCC 33386]
          Length = 407

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I I G  N GKSSL NA+  +++AIV++  GTT D +   ++ L    V + DTAG
Sbjct: 10  NRLHIAIFGKRNMGKSSLINAITGQELAIVSEFAGTTTDPVYKAMEILPIGPVTLIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           I +   +  K  +++T   +   D+ L++ +
Sbjct: 70  IDDEGSL-GKLRVEKTLTIIRKTDIALVITD 99


>gi|311742993|ref|ZP_07716801.1| GTP-binding protein Era [Aeromicrobium marinum DSM 15272]
 gi|311313673|gb|EFQ83582.1| GTP-binding protein Era [Aeromicrobium marinum DSM 15272]
          Length = 305

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 11/137 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   + G  N GKS+L NAL    VAI +  P TTR  +   +      + + DT G
Sbjct: 5   RSGFACFV-GRPNVGKSTLTNALVGGKVAITSSRPQTTRHAIRGLVHRPDAQIVLVDTPG 63

Query: 277 IRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGT 327
           +     ++ +   + ++ T+ EV+   L L   E          +EI+  +    I + T
Sbjct: 64  LHRPRTLLGQRLNDLVRTTWAEVDTIGLCLPADERIGPGDRFLIREIAALRGKPVIAVAT 123

Query: 328 KSDLYSTYTEEYDHLIS 344
           K+DL S      +HL++
Sbjct: 124 KTDLVSPQ-RVAEHLMA 139


>gi|268591205|ref|ZP_06125426.1| putative GTP-binding protein [Providencia rettgeri DSM 1131]
 gi|291313175|gb|EFE53628.1| putative GTP-binding protein [Providencia rettgeri DSM 1131]
          Length = 290

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 37/71 (52%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +L  +I     I ++G + AGKSSL NAL +  ++ V+++ G TR      + +  + +
Sbjct: 24  NQLNSLINYSPTIGLMGKTGAGKSSLINALFQSQLSSVSNVSGCTRQAQRFSMTMSNHTL 83

Query: 270 KISDTAGIRET 280
              D  G+ E+
Sbjct: 84  TFIDLPGVGES 94


>gi|333031347|ref|ZP_08459408.1| ferrous iron transport protein B [Bacteroides coprosuis DSM 18011]
 gi|332741944|gb|EGJ72426.1| ferrous iron transport protein B [Bacteroides coprosuis DSM 18011]
          Length = 824

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 12/140 (8%)

Query: 173 EADLDFSEEEDVQNFSSKE---VLNDILFL---KNDISSHISQGKLGEII---RNGYKIV 223
           E  L  SE E ++  + KE   +L D  FL     DI   +S+ +L  I    R   K+ 
Sbjct: 58  EVSLRRSEAEMIEVVNEKEAIKILGDEEFLDGLHEDIK--LSEEQLKRIALGKRRTIKVA 115

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G+ N GK+SLFN +A    A V +  G T D      + EGY  K+ D  G       
Sbjct: 116 LVGNPNCGKTSLFN-IASGAHAKVGNYGGVTVDAHEGYFEFEGYRFKLVDLPGTYSLSAY 174

Query: 284 VEKEGIKRTFLEVENADLIL 303
             +E   R  L  E  D+I+
Sbjct: 175 TPEEKYVRQHLVEETPDIIV 194


>gi|322392356|ref|ZP_08065817.1| GTP-binding protein [Streptococcus peroris ATCC 700780]
 gi|321144891|gb|EFX40291.1| GTP-binding protein [Streptococcus peroris ATCC 700780]
          Length = 368

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 41/165 (24%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
           QW+ +  H       D+  +  ++ Q  + +EV++ I                 E  R G
Sbjct: 123 QWLMERAHEEGLRPVDVVLTSAQNKQ--AIREVIDKI-----------------EYYRKG 163

Query: 220 YKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
             + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y   I DT
Sbjct: 164 RDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY---IYDT 220

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 221 PGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|301024290|ref|ZP_07187980.1| conserved domain protein [Escherichia coli MS 69-1]
 gi|300396615|gb|EFJ80153.1| conserved domain protein [Escherichia coli MS 69-1]
          Length = 163

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 220 YKIVI--LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           Y+ VI  +G + AGKSS+ NAL K +V  V+D+   TR+V  + +    + +KI D  G+
Sbjct: 78  YEPVIGAMGKTGAGKSSVCNALFKGEVCAVSDVEACTREVQELHIRFGKHSLKIIDIPGV 137

Query: 278 RET 280
            E 
Sbjct: 138 GEN 140


>gi|294084099|ref|YP_003550857.1| GTP-binding protein Era [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663672|gb|ADE38773.1| GTP-binding protein Era [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 303

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  NAGKS+L NA+  + V+IVT    TTR  V  I +     ++ + DT GI   
Sbjct: 13  VALIGAPNAGKSTLMNAMVGQKVSIVTPKVQTTRSRVRGIAMQGTAQIIFV-DTPGIFTP 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
              +++  ++  +   E+ D++LLL +  +++EI
Sbjct: 72  KRRLDRAMVQAAWQGAEDGDVLLLLHDC-ARREI 104


>gi|169834320|ref|YP_001694595.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae Hungary19A-6]
 gi|168996822|gb|ACA37434.1| GTP-binding protein [Streptococcus pneumoniae Hungary19A-6]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|161615552|ref|YP_001589517.1| hypothetical protein SPAB_03326 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|200390636|ref|ZP_03217247.1| putative small GTP-binding domain protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|161364916|gb|ABX68684.1| hypothetical protein SPAB_03326 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|199603081|gb|EDZ01627.1| putative small GTP-binding domain protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 291

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           I I+G S AGKSSL N L + +V+ ++D+   TRDVL   L    + + I D  G+ E
Sbjct: 39  IGIMGKSGAGKSSLCNELFRGEVSPISDVNACTRDVLRFRLRSGRHSLMIVDLPGVGE 96


>gi|148985763|ref|ZP_01818891.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP3-BS71]
 gi|148989185|ref|ZP_01820575.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP6-BS73]
 gi|149004284|ref|ZP_01829061.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP14-BS69]
 gi|237650102|ref|ZP_04524354.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae CCRI 1974]
 gi|237822304|ref|ZP_04598149.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae CCRI 1974M2]
 gi|147757778|gb|EDK64792.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP14-BS69]
 gi|147922067|gb|EDK73190.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP3-BS71]
 gi|147925408|gb|EDK76486.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP6-BS73]
 gi|301800095|emb|CBW32696.1| putative GTPase protein [Streptococcus pneumoniae OXC141]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|15838838|ref|NP_299526.1| GTP-binding protein Era [Xylella fastidiosa 9a5c]
 gi|13959361|sp|Q9PB97|ERA_XYLFA RecName: Full=GTPase Era
 gi|9107401|gb|AAF85046.1|AE004037_7 GTP binding protein [Xylella fastidiosa 9a5c]
          Length = 298

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGI-R 278
           +I ++G  N GKS+L NAL    ++IV++ P TTR  +L I    EG +V + DT G+ R
Sbjct: 11  RIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIVLV-DTPGLHR 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE 307
           E    + +   +     +E+ D  LL+ E
Sbjct: 70  EQKHPMNRLMNRTARGSLEDVDAALLVTE 98


>gi|260061761|ref|YP_003194841.1| GTP-binding protein Era [Robiginitalea biformata HTCC2501]
 gi|88785893|gb|EAR17062.1| putative GTP-binding protein (cell growth-related) [Robiginitalea
           biformata HTCC2501]
          Length = 295

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 89/185 (48%), Gaps = 20/185 (10%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NAL  + ++I+T    TTR  +   ++ + + +  SDT GI +    
Sbjct: 11  IIGNPNVGKSTLMNALVGERLSIITSKAQTTRHRILGIVNGDDFQIVFSDTPGIIKPAYG 70

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK--KEISFPK--------------NIDFIFIGT 327
           +++  +    L + +AD++L + E+  K  K+ +F +               ID    G 
Sbjct: 71  LQESMMDFVRLALVDADVLLYMVEVGEKGLKDEAFAEKIRSSQIPVLLLINKIDTSDQGQ 130

Query: 328 KSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
             +  + +TE++ +     IS+    G+ E++++I ++L       P    + +   + +
Sbjct: 131 LEEQVAFWTEQFPNAEIIPISALERFGVPEVLDRILALLPEAPPYFPKDQLTDRPERFFV 190

Query: 384 SQTVR 388
           ++ +R
Sbjct: 191 NEIIR 195


>gi|322376563|ref|ZP_08051056.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
           M334]
 gi|321282370|gb|EFX59377.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
           M334]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|217976723|ref|YP_002360870.1| GTP-binding proten HflX [Methylocella silvestris BL2]
 gi|217502099|gb|ACK49508.1| GTP-binding proten HflX [Methylocella silvestris BL2]
          Length = 469

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 36/209 (17%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           Y +V L G++NAGKS+LFN +   DV     +  T    L       G  + +SDT G  
Sbjct: 223 YPVVALVGYTNAGKSTLFNRMTHSDVFAENMLFATLDPTLRAVSLGAGAKIILSDTVGFI 282

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYT 336
               ++     + T  EV  ADLIL +++I  +   +   +++ I   +G   D +    
Sbjct: 283 SDLPLMLVSAFRATLEEVLEADLILHVRDIAHEDADAQRTDVETILRDLGVDPDDHRRIL 342

Query: 337 EEYDH----------------------------LISSFTGEGLEELINKIKSILSNKFKK 368
           E ++                             ++S+ TG+GL+EL  +I++ L+    +
Sbjct: 343 EVWNKADLLDEAARDAARNAAKRRAGRDGAEPVIVSALTGQGLDELRAQIETRLA--MDR 400

Query: 369 LPFSI---PSHKRHLYHLSQTVRYLEMAS 394
           L F I   P +   L+ L +    L  ++
Sbjct: 401 LTFEIELQPENGEGLHWLYENAEVLRRSA 429


>gi|167755646|ref|ZP_02427773.1| hypothetical protein CLORAM_01161 [Clostridium ramosum DSM 1402]
 gi|237734394|ref|ZP_04564875.1| GTP-binding protein [Mollicutes bacterium D7]
 gi|167704585|gb|EDS19164.1| hypothetical protein CLORAM_01161 [Clostridium ramosum DSM 1402]
 gi|229382624|gb|EEO32715.1| GTP-binding protein [Coprobacillus sp. D7]
          Length = 296

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISD 273
           + ++G+ + I+G  N GKS+L N++ +  +AI++D+  TTR+ +  I  D E  ++   D
Sbjct: 1   MFKSGF-VSIVGRPNVGKSTLLNSILETKLAIMSDVAQTTRNTIQGIHTDDEAQII-FMD 58

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           T GI +  D +           +   DL+L L   N K
Sbjct: 59  TPGIHKPQDRLGTFMNTTALNSIFGVDLVLFLAPANEK 96


>gi|148998410|ref|ZP_01825852.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP11-BS70]
 gi|225861096|ref|YP_002742605.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230995|ref|ZP_06964676.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255437|ref|ZP_06979023.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502842|ref|YP_003724782.1| GTP-binding protein [Streptococcus pneumoniae TCH8431/19A]
 gi|307067683|ref|YP_003876649.1| putative GTPase [Streptococcus pneumoniae AP200]
 gi|147755807|gb|EDK62852.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP11-BS70]
 gi|225726497|gb|ACO22348.1| GTP-binding protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238437|gb|ADI69568.1| GTP-binding protein [Streptococcus pneumoniae TCH8431/19A]
 gi|306409220|gb|ADM84647.1| Predicted GTPase [Streptococcus pneumoniae AP200]
 gi|327389303|gb|EGE87648.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA04375]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|18977549|ref|NP_578906.1| gtp1/obg family GTP-binding protein [Pyrococcus furiosus DSM 3638]
 gi|18893260|gb|AAL81301.1| GTP-binding protein, gtp1/obg family [Pyrococcus furiosus DSM 3638]
          Length = 431

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 218 NGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +G+ +V L G++NAGKS+L NAL  ++V     +  TT D  T    L G L+ I+DT G
Sbjct: 184 DGFVLVALAGYTNAGKSTLLNALTGENVEAKNQM-FTTLDTTTRRFKLGGKLLLITDTVG 242

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
             +       E    T  E+  AD+I+L+
Sbjct: 243 FIDNLPPFIVEAFHSTLEEIVKADIIVLV 271


>gi|25008423|sp|Q8UGK1|ERA_AGRT5 RecName: Full=GTPase Era
          Length = 317

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G +NAGKS+L N L    V+IV+    TTR V+      +   +   DT G
Sbjct: 23  RSGF-VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAVMRGIAIHKNAQIVFMDTPG 81

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +    +++  +   +   ++ADLILLL
Sbjct: 82  IFKPRRRLDRAMVTSAWGGAKDADLILLL 110


>gi|332366161|gb|EGJ43917.1| GTP-binding protein [Streptococcus sanguinis SK1059]
          Length = 368

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L      
Sbjct: 158 EYCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L  +N      LK ++ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLSAKN------LKYVSPKKEIK-PKT 251


>gi|313895890|ref|ZP_07829444.1| ribosome biogenesis GTPase Era [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975315|gb|EFR40776.1| ribosome biogenesis GTPase Era [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 298

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+  VI G  N GKS+L NAL  + +AI++D P TTR  +   L  E   V   DT G
Sbjct: 5   KSGFAAVI-GRPNVGKSTLINALIGQKIAIMSDKPQTTRSRILCILTQEDAQVIFLDTPG 63

Query: 277 I 277
           +
Sbjct: 64  V 64


>gi|149013110|ref|ZP_01833956.1| GTP-binding protein [Streptococcus pneumoniae SP19-BS75]
 gi|147763055|gb|EDK69998.1| GTP-binding protein [Streptococcus pneumoniae SP19-BS75]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|158320287|ref|YP_001512794.1| GTP-binding protein Era [Alkaliphilus oremlandii OhILAs]
 gi|189037250|sp|A8MG70|ERA_ALKOO RecName: Full=GTPase Era
 gi|158140486|gb|ABW18798.1| GTP-binding protein Era [Alkaliphilus oremlandii OhILAs]
          Length = 295

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D P TTR+ +      + Y +   DT GI +  
Sbjct: 8   VTIIGRPNVGKSTLMNKIIGEKIAIMSDKPQTTRNKIQCVYTQKDYQIVFLDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP-----KNIDFIF 324
             + +  +K     ++  D +L + +            I+  + I  P       ID + 
Sbjct: 68  HKLGQYMVKIATETLKEVDAVLFVVDEGNSIGPGDQYIIDQLQGIDTPIILVLNKIDKMN 127

Query: 325 IGTKSDLYSTY--TEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLP 370
               + LY  Y  T  + H+  IS+  G  +  LIN I   L    K  P
Sbjct: 128 AENLNHLYDQYEKTGIFKHIIGISALEGANVGNLINLIVQYLPEGPKYFP 177


>gi|72392142|ref|XP_846365.1| GTP-binding protein [Trypanosoma brucei TREU927]
 gi|62359539|gb|AAX79974.1| GTP-binding protein, putative [Trypanosoma brucei]
 gi|70802901|gb|AAZ12806.1| GTP-binding protein, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 601

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKSSL N L +K V  V  IPG T+    + L    +L+        RET++ 
Sbjct: 323 IIGYPNVGKSSLINTLRRKSVCKVAPIPGETKVWQYVALTRNIFLIDCPGVVYDRETNND 382

Query: 284 VEKEGIKRTFLEVE---NADLILLLKEINSKKEISFPKNIDFIF 324
           V  + + +  + VE   NAD   +   +N+  +I  PK+I   +
Sbjct: 383 V--QAVLKGVVRVERLGNADKTDV---VNTVLDIVKPKDIAATY 421


>gi|33240804|ref|NP_875746.1| GTP-binding protein Era [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33238333|gb|AAQ00399.1| GTPase, Era homolog [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 314

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 24/172 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ + ++G  N GKS+L N    + VAI + +  TTR+ L   L +    +   D
Sbjct: 9   EGFRSGF-VALIGRPNVGKSTLINQFVGEKVAITSPVAQTTRNRLRAILTINKAQLVFVD 67

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNI- 320
           T GI +   ++ +  +  +   +   D ILL+ + N              K  + P  I 
Sbjct: 68  TPGIHKPHHLLGERLVNTSKKVIGEVDSILLIFDGNEPPGSGDSYIVKLLKGQNIPVTIV 127

Query: 321 ----DFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKIKSIL 362
               D +    ++D    Y   +++        S+  G+G + LI KI S L
Sbjct: 128 LNKWDLVTENQRTDRIKEYISFFNNTGWNFFCCSAINGKGCDGLIQKISSTL 179


>gi|71274463|ref|ZP_00650751.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Xylella fastidiosa Dixon]
 gi|71901684|ref|ZP_00683760.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Xylella fastidiosa Ann-1]
 gi|170730565|ref|YP_001775998.1| GTP-binding protein Era [Xylella fastidiosa M12]
 gi|226741406|sp|B0U3D9|ERA_XYLFM RecName: Full=GTPase Era
 gi|71164195|gb|EAO13909.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Xylella fastidiosa Dixon]
 gi|71728554|gb|EAO30709.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Xylella fastidiosa Ann-1]
 gi|167965358|gb|ACA12368.1| GTP binding protein [Xylella fastidiosa M12]
          Length = 298

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 24/165 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGI-R 278
           +I ++G  N GKS+L NAL    ++IV++ P TTR  +L I    EG +V + DT G+ R
Sbjct: 11  RIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIVLV-DTPGLHR 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE---INSKKEISF----PKNIDFIFIGTKSDL 331
           E    + +   +     +E+ D  LL+ E    N +  +++       I  + +  K D 
Sbjct: 70  EQKHPMNRLMNRTARGSLEDVDAALLVTESTHWNEEDTLAYNLLNDTGIPVVLVINKIDR 129

Query: 332 YS--------------TYTEEYDHLISSFTGEGLEELINKIKSIL 362
           +                +T    H +S+   +GLE L++ + ++L
Sbjct: 130 FKDKSALLPLLTHINENHTFATIHPVSALKRKGLETLVSDLLALL 174


>gi|317495823|ref|ZP_07954186.1| ribosome biogenesis GTPase YqeH [Gemella moribillum M424]
 gi|316914000|gb|EFV35483.1| ribosome biogenesis GTPase YqeH [Gemella moribillum M424]
          Length = 373

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + I+G +N GKS+  N L       K+V   +  PGTT  ++ I LD       
Sbjct: 162 LRNGKDVYIIGATNVGKSTFINKLIELTTGDKNVITTSHFPGTTLGMIEIPLD---RATS 218

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           I DT GI    DI         +L+ ++  L++  KEI ++
Sbjct: 219 IYDTPGIILDYDIAH-------YLDAKSLKLVMPKKEIKAR 252


>gi|306829521|ref|ZP_07462711.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
           ATCC 6249]
 gi|304428607|gb|EFM31697.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
           ATCC 6249]
          Length = 312

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 152 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 205


>gi|289167906|ref|YP_003446175.1| GTP-binding protein [Streptococcus mitis B6]
 gi|288907473|emb|CBJ22310.1| GTP-binding protein [Streptococcus mitis B6]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 12/84 (14%)

Query: 201 NDISSHISQGKLGEIIRNGYKI-----VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            D +  +   K+      G KI     +I+G  NAGKS+L N LA K +A+V + PG T+
Sbjct: 98  TDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTK 157

Query: 256 --DVLTIDLDLEGYLVKISDTAGI 277
               L  + DLE     I DT GI
Sbjct: 158 GQQWLKTNKDLE-----ILDTPGI 176


>gi|229019560|ref|ZP_04176376.1| hypothetical protein bcere0030_40630 [Bacillus cereus AH1273]
 gi|229025801|ref|ZP_04182200.1| hypothetical protein bcere0029_40920 [Bacillus cereus AH1272]
 gi|228735509|gb|EEL86105.1| hypothetical protein bcere0029_40920 [Bacillus cereus AH1272]
 gi|228741726|gb|EEL91910.1| hypothetical protein bcere0030_40630 [Bacillus cereus AH1273]
          Length = 368

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 38/227 (16%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R G  + ++G +N GKS+  N + K      ++V   +  PGTT D++ I LD E  
Sbjct: 155 EYYREGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFIFI 325
           L    DT GI     +    G +   L     ++  ++ ++N ++ + F      D++  
Sbjct: 215 LF---DTPGIINHHQMAHYVGKQSLKLITPTTEIKPMVFQLNEEQTLFFGGLARFDYVSG 271

Query: 326 GTKS---------DLYSTYTEEYDHLISSFTGEGL-----EELINKIKSILSNKFKKLPF 371
           G ++          ++ T  E+ D L     GE L     EEL N        +F K  F
Sbjct: 272 GRRAFTCHFSNRLTIHRTKLEKADELYERHAGELLNPPTPEELEN------MPEFVKYEF 325

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           +I   K         V +  +  +   + G  I+A   +  SVSL K
Sbjct: 326 NIREPK-------TDVVFSGLGWVTVNESGAKIVAHVPKGVSVSLRK 365


>gi|20073169|gb|AAH27306.1| Mitochondrial GTPase 1 homolog (S. cerevisiae) [Mus musculus]
          Length = 327

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 18/129 (13%)

Query: 167 HIRSFIEADL-DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ--GKLGEIIRNGYK-- 221
           H+    + DL D +E++ +     ++ L+++LF       +I Q   K+ E+IR  Y+  
Sbjct: 77  HLLVLNKMDLADLTEQQKIVQRLEEKGLSNVLFTNCVKDENIKQIVPKVMELIRCSYRYH 136

Query: 222 --------IVILGHSNAGKSSLFNALAKKDV-----AIVTDIPGTTRDVLTIDLDLEGYL 268
                   I+++G  N GKSSL N+L ++ +     A V   PG TR V +     E  L
Sbjct: 137 RAETPEYCIMVVGVPNVGKSSLINSLRRQHLRTGKAARVGGEPGITRAVTSRIQVCERPL 196

Query: 269 VKISDTAGI 277
           V + DT G+
Sbjct: 197 VFLLDTPGV 205


>gi|72381985|ref|YP_291340.1| small GTP-binding protein domain-containing protein
           [Prochlorococcus marinus str. NATL2A]
 gi|72001835|gb|AAZ57637.1| Small GTP-binding protein domain [Prochlorococcus marinus str.
           NATL2A]
          Length = 517

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKI 271
           E+ R    +V+ G  ++GK+SL  AL KK V  V+   G+TR   T  L L+G    ++I
Sbjct: 118 ELDRGDIILVVFGIGSSGKTSLIRALLKKIVGKVSPEMGSTRGKETFRLKLKGLTRGIRI 177

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            DT GI E      +E  K   +E   +DL+L++ E
Sbjct: 178 IDTPGILEAGR-GGREREKSALIEARKSDLMLVVIE 212


>gi|15901020|ref|NP_345624.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae TIGR4]
 gi|111658305|ref|ZP_01408995.1| hypothetical protein SpneT_02000534 [Streptococcus pneumoniae
           TIGR4]
 gi|148994504|ref|ZP_01823684.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP9-BS68]
 gi|168483217|ref|ZP_02708169.1| GTP-binding protein [Streptococcus pneumoniae CDC1873-00]
 gi|168488984|ref|ZP_02713183.1| GTP-binding protein [Streptococcus pneumoniae SP195]
 gi|168492509|ref|ZP_02716652.1| GTP-binding protein [Streptococcus pneumoniae CDC0288-04]
 gi|168493081|ref|ZP_02717224.1| GTP-binding protein [Streptococcus pneumoniae CDC3059-06]
 gi|221231869|ref|YP_002511021.1| GTPase protein [Streptococcus pneumoniae ATCC 700669]
 gi|225854631|ref|YP_002736143.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae JJA]
 gi|225856833|ref|YP_002738344.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae P1031]
 gi|225858943|ref|YP_002740453.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae 70585]
 gi|14972633|gb|AAK75264.1| GTP-binding protein [Streptococcus pneumoniae TIGR4]
 gi|147927174|gb|EDK78210.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP9-BS68]
 gi|172043516|gb|EDT51562.1| GTP-binding protein [Streptococcus pneumoniae CDC1873-00]
 gi|183572498|gb|EDT93026.1| GTP-binding protein [Streptococcus pneumoniae SP195]
 gi|183573327|gb|EDT93855.1| GTP-binding protein [Streptococcus pneumoniae CDC0288-04]
 gi|183576748|gb|EDT97276.1| GTP-binding protein [Streptococcus pneumoniae CDC3059-06]
 gi|220674329|emb|CAR68875.1| putative GTPase protein [Streptococcus pneumoniae ATCC 700669]
 gi|225721097|gb|ACO16951.1| GTP-binding protein [Streptococcus pneumoniae 70585]
 gi|225723566|gb|ACO19419.1| GTP-binding protein [Streptococcus pneumoniae JJA]
 gi|225724745|gb|ACO20597.1| GTP-binding protein [Streptococcus pneumoniae P1031]
 gi|301794257|emb|CBW36678.1| putative GTPase protein [Streptococcus pneumoniae INV104]
 gi|332073500|gb|EGI83979.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17570]
 gi|332201626|gb|EGJ15696.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47368]
 gi|332203011|gb|EGJ17079.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47901]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|256369100|ref|YP_003106608.1| GTP-binding protein Era [Brucella microti CCM 4915]
 gi|255999260|gb|ACU47659.1| GTP-binding protein Era [Brucella microti CCM 4915]
          Length = 311

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR  L   + +EG  L+ + DT 
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTR-ALVRGIFIEGPALIVLVDTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI      +++  +   +   ++AD+IL++
Sbjct: 76  GIFRPKRRLDRAMVTTAWGGAKDADIILVI 105


>gi|227503133|ref|ZP_03933182.1| GTP-binding protein Era [Corynebacterium accolens ATCC 49725]
 gi|227076194|gb|EEI14157.1| GTP-binding protein Era [Corynebacterium accolens ATCC 49725]
          Length = 345

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  E   V + D
Sbjct: 45  EGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHTIRGLVHREDAQVVVVD 103

Query: 274 TAGIRETDDIVEK---EGIKRTFLEVE 297
           T G+     ++ +   E +K T+ +V+
Sbjct: 104 TPGLHRPRTLLGERLNEVVKETYADVD 130


>gi|296004532|ref|XP_002808687.1| GTP binding protein, putative [Plasmodium falciparum 3D7]
 gi|225631672|emb|CAX63958.1| GTP binding protein, putative [Plasmodium falciparum 3D7]
          Length = 286

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 27/129 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDL-------DLEGY-LVKI 271
           +I I G SN GKSSL NAL   ++V+  ++ PG TR +   +L       DL GY   K+
Sbjct: 78  QIAIFGRSNVGKSSLINALLNYREVSQASNTPGRTRHLFIFNLLNYLSIVDLPGYGYAKV 137

Query: 272 S----DTAGIRETDDIVEKEGIKRTFLEVENA------DLILLLKEINSKKEISFPKNID 321
           S    +   I   + +   + +KR    +E+       D ILL        ++   KNI 
Sbjct: 138 SKELRNNWSILIEEYLNRAKNLKRALCLIESTESFSTYDFILL--------DMLITKNIP 189

Query: 322 FIFIGTKSD 330
           F  I TK D
Sbjct: 190 FQIIITKID 198


>gi|15606930|ref|NP_214311.1| GTP-binding protein HflX [Aquifex aeolicus VF5]
 gi|2984170|gb|AAC07703.1| GTP-binding protein HflX [Aquifex aeolicus VF5]
          Length = 370

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 28/164 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE 279
           ++ I+G++NAGKS+L NAL KKD  +   +  T     +  +    + +  +DT G IR+
Sbjct: 198 RVAIVGYTNAGKSTLMNALTKKDTYVANMLFATLDTKTSARVIYPDFKLLFTDTVGFIRK 257

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID------------FIFIG 326
              +++  E  K T  EV+ AD+IL + +++ +  + +   ++             I+  
Sbjct: 258 LPPELI--ESFKATLEEVQEADIILHVVDVSDEGWLDYVSTVNEVLKELGAEEKPIIYAL 315

Query: 327 TKSDLYSTYTEEYDH------------LISSFTGEGLEELINKI 358
            K+D       E +H            LIS+    GL +L++KI
Sbjct: 316 NKADKLVETENEMNHLPHPAFIEGDAVLISAEKRWGLGKLLDKI 359


>gi|50122199|ref|YP_051366.1| GTP-binding protein Era [Pectobacterium atrosepticum SCRI1043]
 gi|49612725|emb|CAG76175.1| GTP-binding protein [Pectobacterium atrosepticum SCRI1043]
          Length = 301

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 37/193 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  + + +  EG Y     DT G+   
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRI-MGIHTEGPYQAIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I EK  I R      ++          S  ++     I F+  GT       + ++ D
Sbjct: 68  --IEEKRAINRLMNRAASS----------SMGDVEL---IIFVVEGTH------WNDDDD 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++    + L  L  INK+ ++ ++K K LP        H+  LSQ + +L++  ++ E
Sbjct: 107 MVLNKLRDQKLPVLLAINKVDNV-TDKTKLLP--------HIQFLSQQMDFLDVVPISAE 157

Query: 398 KDCGLDIIAENLR 410
           K   +D IA  +R
Sbjct: 158 KGSNVDTIASIVR 170


>gi|10177528|dbj|BAB10923.1| GTP-binding protein-like [Arabidopsis thaliana]
          Length = 353

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 50/244 (20%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           GY + ++G  N GKS+L N +  + ++IVTD P TTR  +        Y + + DT G+ 
Sbjct: 56  GY-VAVVGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTPGVI 114

Query: 279 ETD----DIVEKEGIKRTFLEVENADLILLL----KEINSKKEI------SFPKNIDFIF 324
           E      D +  + ++   +   NAD +++L    K   + +E+         K    + 
Sbjct: 115 EKKMHRLDTMMMKNVRDAAI---NADCVVILVDACKTPTNIEEVLKEGLGDLEKKPPMLL 171

Query: 325 IGTKSDL------------YSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLP 370
           +  K DL            Y  +T + D +I  S+  G G+E++   I S       KLP
Sbjct: 172 VMNKKDLIKPGEIAKKLEWYEKFT-DVDEVIPVSAKYGHGIEDVKEWILS-------KLP 223

Query: 371 FSIPSHKRHL-------YHLSQTVR---YLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
           F  P + + +       + +S+ VR   +++  +     C +++++   R A+    ++ 
Sbjct: 224 FGPPYYPKDIVSEHPERFFVSEIVREKIFMQYRNEVPYACQVNVLSYKTRPAAKDFIQVE 283

Query: 421 GCVD 424
             VD
Sbjct: 284 VVVD 287


>gi|86134519|ref|ZP_01053101.1| GTP-binding protein Era [Polaribacter sp. MED152]
 gi|85821382|gb|EAQ42529.1| GTP-binding protein Era [Polaribacter sp. MED152]
          Length = 293

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I+G+ N GKS+L NAL  + ++I+T    TTR  +   ++ E Y +  SDT GI
Sbjct: 10  IIGNPNVGKSTLMNALVGEKLSIITPKAQTTRHRILGIVNHEEYQIIFSDTPGI 63


>gi|226227313|ref|YP_002761419.1| GTP-binding protein [Gemmatimonas aurantiaca T-27]
 gi|226090504|dbj|BAH38949.1| GTP-binding protein [Gemmatimonas aurantiaca T-27]
          Length = 394

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 3/89 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTA 275
           R+ +++ ++G++NAGKSS+   LA      V D    T D LT ++++ +GY V ++DT 
Sbjct: 153 RSQFRVSLVGYTNAGKSSVLRTLANDGEVFVEDRLFATLDPLTREVEVGDGYTVLLTDTV 212

Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLIL 303
           G IR+    +     + T  E   ADL+L
Sbjct: 213 GFIRKLPHHL-VASFRATLAEAREADLLL 240


>gi|193216921|ref|YP_002000163.1| ribosome biogenesis GTP-binding protein YsxC [Mycoplasma
           arthritidis 158L3-1]
 gi|238692481|sp|B3PN57|ENGB_MYCA5 RecName: Full=Probable GTP-binding protein EngB
 gi|193002244|gb|ACF07459.1| GTPase protein YihA (EngB) [Mycoplasma arthritidis 158L3-1]
          Length = 183

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 7/53 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-------LTIDLDLEGY 267
           IV  G SN GKSSL NALA + +A  +  PG TR +         I +DL GY
Sbjct: 22  IVFWGRSNVGKSSLINALASQKIAKTSSTPGRTRLINYFETQRKKIIVDLPGY 74


>gi|160940878|ref|ZP_02088218.1| hypothetical protein CLOBOL_05770 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436122|gb|EDP13889.1| hypothetical protein CLOBOL_05770 [Clostridium bolteae ATCC
           BAA-613]
          Length = 303

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + +AI +D P TTR+ + T+  D  G ++ + DT GI + 
Sbjct: 12  VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDDRGQIIFL-DTPGIHKA 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + + +  +      ++  D+IL L E
Sbjct: 71  KNKLGQYMVNVAEHTLKEVDVILWLVE 97


>gi|37523991|ref|NP_927368.1| GTP-binding protein Era [Gloeobacter violaceus PCC 7421]
 gi|35214997|dbj|BAC92363.1| glr4422 [Gloeobacter violaceus PCC 7421]
          Length = 304

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N L  + VAIV+    TTR+ L   L L    + + DT G
Sbjct: 11  RSGF-VAIVGRPNVGKSTLVNRLVGEKVAIVSPTAQTTRNRLRGILTLPTAQIILVDTPG 69

Query: 277 I 277
           I
Sbjct: 70  I 70


>gi|307708681|ref|ZP_07645144.1| GTP-binding protein [Streptococcus mitis NCTC 12261]
 gi|307615255|gb|EFN94465.1| GTP-binding protein [Streptococcus mitis NCTC 12261]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|238756182|ref|ZP_04617501.1| Predicted GTPase [Yersinia ruckeri ATCC 29473]
 gi|238705597|gb|EEP97995.1| Predicted GTPase [Yersinia ruckeri ATCC 29473]
          Length = 301

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 203 ISSHISQGKLGEI---IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           IS H+S+  L  +   I     I ++G +  GKSSL N L     A V+ I G TR V T
Sbjct: 26  ISHHLSRTILKHVHQCIHYEPTIGVMGKTGVGKSSLCNTLFNPPPAKVSAIKGCTRRVQT 85

Query: 260 IDLDLEGYLVKISDTAGIRETDDI 283
               L  + + I D  GI ET ++
Sbjct: 86  YQWALAPHALLIVDFPGIGETPEL 109


>gi|160940458|ref|ZP_02087803.1| hypothetical protein CLOBOL_05348 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437038|gb|EDP14805.1| hypothetical protein CLOBOL_05348 [Clostridium bolteae ATCC
           BAA-613]
          Length = 411

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 22/160 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I   G  NAGKSS+ NA+  +D+A+V+D+ GTT D +   ++L     V + DT GI + 
Sbjct: 14  IGFFGRRNAGKSSVLNAVTGQDLAVVSDVKGTTTDPVYKAMELLPLGPVMMIDTPGIDDE 73

Query: 281 DDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISFP-------KNIDFIFIGTKSDLY 332
             +     +++++  +   D+ +L++   +      +        K I  + +  K+D+ 
Sbjct: 74  GQLGSLR-VRKSYQVLNKTDVAVLVMDACHGPAPEDYTLLKKIGEKQIPCVAVCNKADVV 132

Query: 333 STYTEEYDHL--------ISSFTGEGLEELINKIKSILSN 364
                  + +        +S+ TG+G    I  +K  L+N
Sbjct: 133 GAAGGRPEGIPESVPVLSVSAHTGQG----ITALKECLAN 168


>gi|154249103|ref|YP_001409928.1| ribosome biogenesis GTP-binding protein YsxC [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153039|gb|ABS60271.1| GTP-binding protein HSR1-related [Fervidobacterium nodosum Rt17-B1]
          Length = 201

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRETDD 282
           +G SN GKSSL NAL  K VA V+  PG T  +    +D   Y V +     A   + D 
Sbjct: 35  VGRSNVGKSSLLNALVGKKVAFVSKNPGKTSTINYFLIDNRFYFVDLPGYGYAKTSKKDR 94

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
            + ++ I+R F E  + ++ ++   I+S+ E+
Sbjct: 95  ELWRKVIERYFSE-RSWNMKVMFSLIDSRHEL 125


>gi|15903087|ref|NP_358637.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae R6]
 gi|116515446|ref|YP_816493.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae D39]
 gi|15458663|gb|AAK99847.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076022|gb|ABJ53742.1| GTP-binding protein [Streptococcus pneumoniae D39]
 gi|183217365|gb|ACC59284.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|313901086|ref|ZP_07834574.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp. HGF2]
 gi|312954044|gb|EFR35724.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp. HGF2]
          Length = 288

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 14/84 (16%)

Query: 184 VQNFSSKEVLNDILFLKNDI-------SSHISQGKLGEIIRNGYK-----IVILGHSNAG 231
           +QN +++ V  DIL  K +I       S  + Q K+  + R G +      +++G  N G
Sbjct: 80  LQNETTRVVALDIL--KENIIPGIVEESRLLMQAKIERMKRRGIRPRAIRAMVVGVPNVG 137

Query: 232 KSSLFNALAKKDVAIVTDIPGTTR 255
           KS+  N ++KK VA+  D PG TR
Sbjct: 138 KSTFINRISKKKVAVTGDRPGVTR 161


>gi|297836256|ref|XP_002886010.1| EMB2001 [Arabidopsis lyrata subsp. lyrata]
 gi|297331850|gb|EFH62269.1| EMB2001 [Arabidopsis lyrata subsp. lyrata]
          Length = 300

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 31/189 (16%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDV--LTID-----LDLEGY-LVKIS 272
           I ILG SN GKSSL N L  KK+VA+ +  PG T+ +    ++     +DL GY   K+S
Sbjct: 123 IAILGRSNVGKSSLINCLVRKKEVALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKVS 182

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF---IFIGTKS 329
           D A   +TD     +G    FL  +    +LLL + +       P+ ID     ++G ++
Sbjct: 183 DAA---KTDWSAFTKGY---FLNRDTLVCVLLLIDASVP-----PQKIDLDCANWLG-RN 230

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS-------HKRHLYH 382
           ++  T+       + +  G+  +E I   + I+   FK  P  I +           L H
Sbjct: 231 NVQMTFVFTKCDKMKATKGKRPDENIKAFQQIIKENFKVHPPWILTSSVSGLGRDELLLH 290

Query: 383 LSQTVRYLE 391
           +SQ   Y +
Sbjct: 291 MSQLRNYWD 299


>gi|325954893|ref|YP_004238553.1| GTP-binding protein Era-like-protein [Weeksella virosa DSM 16922]
 gi|323437511|gb|ADX67975.1| GTP-binding protein Era-like-protein [Weeksella virosa DSM 16922]
          Length = 295

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 28/165 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI----RE 279
           I+G+ N GKS+L N L K+ + I T    TTR  +   L  E Y +  SDT G+     E
Sbjct: 14  IIGNPNVGKSTLMNLLMKERLVIATHKAQTTRHRIKGILTGENYQIVFSDTPGVIDPAYE 73

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPK----NIDFIFIGTKSDLY 332
             +++  + +K + +   +AD++L + E+  K+   E  F K    N+  + +  K DL 
Sbjct: 74  LQNLM-MDSVKESLI---DADVLLYVVEVGEKRMKNEEIFEKIQQTNVPTLILLNKIDLV 129

Query: 333 ST--YTEEYDHL-----------ISSFTGEGLEELINKIKSILSN 364
           S     +  DH            IS+     ++ LINKI  +L N
Sbjct: 130 SQEKLDQAVDHWHALLPNAQILPISAKENFNIDLLINKIIELLPN 174


>gi|295395416|ref|ZP_06805615.1| GTP-binding protein HflX [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971738|gb|EFG47614.1| GTP-binding protein HflX [Brevibacterium mcbrellneri ATCC 49030]
          Length = 510

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G++NAGKSSL N L    V +  ++  T    +      +G +   +DT G     
Sbjct: 284 VAIVGYTNAGKSSLLNRLTDAGVMVKNELFATLDPTVRQAHTADGRVFTYTDTVGFVRNL 343

Query: 282 DIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEI-SFPKNIDF--IFIGTKS 329
                E  + T  E  +ADL+L          L +I +  E+    + ID   + +  K+
Sbjct: 344 PHQLVEAFRSTLEEAADADLLLHIVDASHTDPLAQIKAVHEVLDEAQTIDIPELIVFNKA 403

Query: 330 DLYSTYT-----EEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D+  + T       Y +  ++S+ TG+G++EL  +I  +L      +   +P
Sbjct: 404 DIADSDTLARVLNTYPNAVVVSAHTGQGIDELRERIDDLLPRPSHHITALVP 455


>gi|289422751|ref|ZP_06424591.1| GTP-binding protein HflX [Peptostreptococcus anaerobius 653-L]
 gi|289156930|gb|EFD05555.1| GTP-binding protein HflX [Peptostreptococcus anaerobius 653-L]
          Length = 430

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 24/206 (11%)

Query: 222 IVILGHSNAGKSSLFNAL-------AKKDVAIVTDIPGTTRDV-LTIDLDLEGYLVKISD 273
           +   G++N GKS++ N L        K+   IV D   +T DV L   +   G    I D
Sbjct: 209 VAFAGYTNCGKSTIMNKLIELGPDHTKESEVIVKDHMLSTLDVSLRKSMLPNGKDFMIVD 268

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI-DFIF-------- 324
           T G       + +E  + TF EV  ADLIL++ +  S+ ++   K+I DF F        
Sbjct: 269 TIGFVSDLPGIIREAFRSTFEEVSYADLILVVYDA-SRDDLEAQKSIMDFTFEKIGVSNK 327

Query: 325 ----IGTKSDLYSTYTEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
               +  K+D      E  D+   +S+ +G  L++LI  I+  L    +     IP  + 
Sbjct: 328 RKIEVYNKADKLDPIPESSDNKIYVSAKSGYNLDKLIEAIQFNLFEDNQDASLLIPYSRF 387

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDI 404
            +++  +  R +EM      D G+++
Sbjct: 388 DIFNEIKKNRVIEMDDFKHTDFGIEL 413


>gi|297724335|ref|NP_001174531.1| Os05g0567300 [Oryza sativa Japonica Group]
 gi|255676585|dbj|BAH93259.1| Os05g0567300 [Oryza sativa Japonica Group]
          Length = 180

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           R+GY + +LG  N GKS+L N +  + ++IVTD P TTR
Sbjct: 124 RSGY-VAVLGKPNVGKSTLINQIVGQKLSIVTDKPQTTR 161


>gi|224535291|ref|ZP_03675830.1| hypothetical protein BACCELL_00152 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523099|gb|EEF92204.1| hypothetical protein BACCELL_00152 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 351

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 10/76 (13%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP---GTTRDVLT----IDLD 263
           +L E I  G  +V +G S  GKSSL NAL +K V + +DI    G  R   T    + +D
Sbjct: 185 QLRESISAGETVVFVGSSGVGKSSLVNALCEKSVLLTSDISLSTGKGRHTSTRREMVLMD 244

Query: 264 LEGYLVKISDTAGIRE 279
             G L+   DT G+RE
Sbjct: 245 SSGVLI---DTPGVRE 257


>gi|224129530|ref|XP_002328739.1| predicted protein [Populus trichocarpa]
 gi|222839037|gb|EEE77388.1| predicted protein [Populus trichocarpa]
          Length = 560

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 6/76 (7%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           +D++  + + KL        ++ I+G  N GKS+L N L +++  +V    G TRD +  
Sbjct: 246 DDVAGEVDESKLP------LQLAIIGRPNVGKSTLLNTLLQEERVLVGPEVGLTRDSVRT 299

Query: 261 DLDLEGYLVKISDTAG 276
               EG  + + DTAG
Sbjct: 300 QFQYEGRTIYLVDTAG 315


>gi|188590271|ref|YP_001920268.1| GTP-binding protein Era [Clostridium botulinum E3 str. Alaska E43]
 gi|251778596|ref|ZP_04821516.1| GTP-binding protein Era [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|226741197|sp|B2V2K0|ERA_CLOBA RecName: Full=GTPase Era
 gi|188500552|gb|ACD53688.1| GTP-binding protein Era [Clostridium botulinum E3 str. Alaska E43]
 gi|243082911|gb|EES48801.1| GTP-binding protein Era [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 295

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ + I+G  N GKS+L N +  + ++IV++ P TTR+ +   L  + Y +   DT
Sbjct: 1   MFKSGF-VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGDDYQIVFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +        + DL+L L
Sbjct: 60  PGIHKPKHKLGEYMVNSAKDSTNDVDLVLFL 90


>gi|152980964|ref|YP_001353811.1| HflX GTP-binding protein [Janthinobacterium sp. Marseille]
 gi|151281041|gb|ABR89451.1| HflX GTP-binding protein [Janthinobacterium sp. Marseille]
          Length = 372

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 24/163 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           N + + ++G++NAGKS+LFNALAK  V +  D    T D  +  + L E   V ISDT G
Sbjct: 188 NAFSVSLVGYTNAGKSTLFNALAKTRV-LAADQLFATLDTTSRRIYLGEAGNVVISDTVG 246

Query: 277 -IRETDDIVEKEGIKRTFLEVENADLIL------------LLKEINSKKEISFPKNIDFI 323
            IRE    +     + T  E  +ADL+L             ++++N         +I  I
Sbjct: 247 FIRELPHQL-VAAFRATLEETIHADLLLHVVDGASPVRMEQIEQVNMVLREIGADHIPQI 305

Query: 324 FIGTKSDLY----STYTEEYDHL----ISSFTGEGLEELINKI 358
            +  K D      +   +EYD +    IS+ TG GL+ L   I
Sbjct: 306 LVWNKIDAAGLEPALERDEYDKIRRVFISAQTGSGLDLLREAI 348


>gi|149204767|ref|ZP_01881730.1| GTP-binding protein HflX [Roseovarius sp. TM1035]
 gi|149141736|gb|EDM29789.1| GTP-binding protein HflX [Roseovarius sp. TM1035]
          Length = 424

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 28/169 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279
           + ++G++NAGKS+LFN L   DV +  D+   T D  +  ++L   G  V +SDT G   
Sbjct: 205 VALVGYTNAGKSTLFNRLTGADV-MAKDMLFATLDPTMRRVNLPEGGPEVILSDTVGFIS 263

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF----IGTKSDLYSTY 335
                     + T  EV +ADLI  +++I+  + +S  +++  I     +  K+     +
Sbjct: 264 DLPTELVAAFRATLEEVLSADLICHVRDISHPETVSQSRDVATILESLGVSDKTPQIEIW 323

Query: 336 TEEYDHL--------------------ISSFTGEGLEELINKIKSILSN 364
             + D L                    IS+ +G+GL +LI+ I   LS+
Sbjct: 324 N-KIDRLPEDARAAAVTQAARQEDVIAISAISGQGLSDLISAIGDKLSD 371


>gi|188528646|ref|NP_955005.2| mitochondrial GTPase 1 precursor [Mus musculus]
 gi|134034175|sp|Q8R2R6|MTG1_MOUSE RecName: Full=Mitochondrial GTPase 1; AltName: Full=GTP-binding
           protein 7; Flags: Precursor
 gi|74190443|dbj|BAE25897.1| unnamed protein product [Mus musculus]
          Length = 326

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 18/129 (13%)

Query: 167 HIRSFIEADL-DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ--GKLGEIIRNGYK-- 221
           H+    + DL D +E++ +     ++ L+++LF       +I Q   K+ E+IR  Y+  
Sbjct: 77  HLLVLNKMDLADLTEQQKIVQRLEEKGLSNVLFTNCVKDENIKQIVPKVMELIRCSYRYH 136

Query: 222 --------IVILGHSNAGKSSLFNALAKKDV-----AIVTDIPGTTRDVLTIDLDLEGYL 268
                   I+++G  N GKSSL N+L ++ +     A V   PG TR V +     E  L
Sbjct: 137 RAETPEYCIMVVGVPNVGKSSLINSLRRQHLRTGKAARVGGEPGITRAVTSRIQVCERPL 196

Query: 269 VKISDTAGI 277
           V + DT G+
Sbjct: 197 VFLLDTPGV 205


>gi|73946698|ref|XP_541269.2| PREDICTED: similar to RAS and EF hand domain containing [Canis
           familiaris]
          Length = 751

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 33/154 (21%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-------LDLEGYLV 269
           +  YKIV+ G +  GKSS    L K       +  G T   L +D       +D E  ++
Sbjct: 550 QKAYKIVLAGDAAVGKSSFLMRLCK------NEFRGNTSATLGVDFQMKTLIVDGERTVL 603

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFP 317
           ++ DTAG +E    + K   +R       AD +LLL ++  +K            E +  
Sbjct: 604 QLWDTAG-QERFRSIAKSYFRR-------ADGVLLLYDVTCEKSFLSVREWVDMIEDAIQ 655

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           ++I  + +G K+DL    T E    +  + GE L
Sbjct: 656 ESIPIMLVGNKADLRDAATAEEQKCVPGYLGEKL 689


>gi|85715518|ref|ZP_01046499.1| GTP-binding protein, [Nitrobacter sp. Nb-311A]
 gi|85697713|gb|EAQ35589.1| GTP-binding protein, [Nitrobacter sp. Nb-311A]
          Length = 457

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 31/187 (16%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y++V L G++NAGKS+LFN L + DV    D+   T D     L L  G    +SDT
Sbjct: 220 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRSLALPHGGKAMLSDT 278

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------------------------S 310
            G             + T  EV  AD+IL +++I+                        +
Sbjct: 279 VGFISNLPTQLVAAFRATLEEVMEADIILHVRDISHEDTEPQQHDVEAVLHQLGIERGGA 338

Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKF 366
            + +     ID   +  + +L +            L+S+ TGEG+E L+  I+  L+   
Sbjct: 339 ARILEVWNKIDRFDVDQRKELENIVARRSTDVPCFLVSAETGEGVETLLAAIEDRLAATR 398

Query: 367 KKLPFSI 373
             L  S+
Sbjct: 399 TTLDLSV 405


>gi|258591961|emb|CBE68266.1| putative GTPase [NC10 bacterium 'Dutch sediment']
          Length = 389

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 47/187 (25%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD--------LEGYLVKISD 273
           + ++G++NAGKS+LFNAL    V         T D L + LD         +G+   +SD
Sbjct: 208 VALVGYTNAGKSTLFNALTHSGV--------QTDDALFVTLDPILRRVTMADGFGFLLSD 259

Query: 274 TAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKS 329
           T G   R  + +V     K T  E++ ADL+L + + +  + +   + +D I   +G  +
Sbjct: 260 TVGFIRRLPEQLV--TAFKATLEELDEADLLLHVIDASHPQVMEQKEAVDTILRELGLST 317

Query: 330 DLYSTYTEEYDHL-------------------ISSFTGEGLEELINKIKSIL------SN 364
                   + D L                   IS+ TG GL+ L+  ++  L      + 
Sbjct: 318 KPIVEVFNKMDRLTGGIGQSFIGGKTIVPRVAISALTGYGLDRLLQTVRESLAPTASQAR 377

Query: 365 KFKKLPF 371
            + +LP+
Sbjct: 378 GYDRLPY 384


>gi|293364879|ref|ZP_06611596.1| GTP-binding protein [Streptococcus oralis ATCC 35037]
 gi|307703131|ref|ZP_07640077.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|291316329|gb|EFE56765.1| GTP-binding protein [Streptococcus oralis ATCC 35037]
 gi|307623206|gb|EFO02197.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
          Length = 368

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 41/170 (24%)

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
           SS   QW+ +  H       D+  +  ++    + KEV++ I                 E
Sbjct: 118 SSKISQWLMERAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-----------------E 158

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
             R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y  
Sbjct: 159 HYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY-- 216

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 -IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|238487330|ref|XP_002374903.1| GTP binding protein (EngB), putative [Aspergillus flavus NRRL3357]
 gi|317143661|ref|XP_001819608.2| GTP-binding protein (EngB) [Aspergillus oryzae RIB40]
 gi|220699782|gb|EED56121.1| GTP binding protein (EngB), putative [Aspergillus flavus NRRL3357]
          Length = 318

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 22/133 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-------------IDLDLEGYL 268
           +  LG SN GKSSL NA+  K++   +  PG TR++               + LD+ GY 
Sbjct: 98  VAFLGRSNVGKSSLLNAIMGKEICWTSSKPGRTREMNAFGIGGTKGGESKIVLLDMPGYG 157

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVE--------NADLILLLKEINSKKEISFPKNI 320
                  GI     +  ++ ++R FL ++        + D+++L ++     ++   K +
Sbjct: 158 KASRTEWGIEIMKYLQGRKQLRRAFLLIDSLHGLKKTDEDILMLFRKYAIPHQVIMSK-V 216

Query: 321 DFIFIGTKSDLYS 333
           D I    KS + S
Sbjct: 217 DKILAKKKSQVKS 229


>gi|116072347|ref|ZP_01469614.1| GTP-binding protein Era [Synechococcus sp. BL107]
 gi|116064869|gb|EAU70628.1| GTP-binding protein Era [Synechococcus sp. BL107]
          Length = 319

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 216 IRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           +R+ Y+   I ++G  N GKS+L N L  + VAI + +  TTR+ L   L  E   + + 
Sbjct: 13  VRDDYRSGFIALIGRPNVGKSTLLNKLVGEKVAITSPVAQTTRNRLRAILTTEESQMVLV 72

Query: 273 DTAGI 277
           DT GI
Sbjct: 73  DTPGI 77


>gi|313115494|ref|ZP_07800959.1| GTP-binding protein HflX [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622204|gb|EFQ05694.1| GTP-binding protein HflX [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 421

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 20/178 (11%)

Query: 217 RNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           + G  +V ++G++N GKSSL NAL    VA   D+   T D  +  L L  G  V + DT
Sbjct: 205 KTGMPVVSLVGYTNVGKSSLMNALCGPSVA-EADMLFATLDPTSRKLILPSGMAVLLVDT 263

Query: 275 AGI--RETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP-----------KNI 320
            G   R   ++V  E  K T  E   +D+I+ + +  + ++E                +I
Sbjct: 264 VGFVSRLPHNLV--EAFKSTLEEAAWSDVIIRVADAGDEQREEQLAVTDEVLDGLDCADI 321

Query: 321 DFIFIGTKSDLYSTYTEEYDHLISSF-TGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
             + +  K D     + + D L++S  TG GL+ L+ K+  +LS++   L   +P  K
Sbjct: 322 PRLTVYNKCDKPGAMSFDPDILLTSAKTGYGLDTLLAKLDEVLSDRVHTLKVLLPYDK 379


>gi|306836628|ref|ZP_07469594.1| GTP-binding protein Era [Corynebacterium accolens ATCC 49726]
 gi|304567458|gb|EFM43057.1| GTP-binding protein Era [Corynebacterium accolens ATCC 49726]
          Length = 345

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  E   V + D
Sbjct: 45  EGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHTIRGLVHREDAQVVVVD 103

Query: 274 TAGIRETDDIVEK---EGIKRTFLEVE 297
           T G+     ++ +   E +K T+ +V+
Sbjct: 104 TPGLHRPRTLLGERLNEVVKETYADVD 130


>gi|296084119|emb|CBI24507.3| unnamed protein product [Vitis vinifera]
          Length = 739

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++ I+G  N GKS+L N L +++  +V    G TRD +      +G  V + DTAG
Sbjct: 402 QLAIVGRPNVGKSTLLNTLLQENRVLVGPEAGLTRDSVRAQFQFQGRTVYLVDTAG 457


>gi|254412656|ref|ZP_05026429.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196180391|gb|EDX75382.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 517

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 14/161 (8%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           + VQN   +     +L    +I + +++G+L         +VI G  ++GK+SL NAL  
Sbjct: 98  QQVQNIQDEVAQQALLSRSREIEATLARGEL--------LVVIFGTGSSGKTSLINALIG 149

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDI-VEKEGIKRTFLEVEN 298
           + V  V    GTT    T  L L+G    + I+DT GI E   +  ++E + R       
Sbjct: 150 QMVGQVGAPMGTTDQGQTYTLTLKGIERQILITDTPGILEAGVVGTQREQLARQL--ATE 207

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           ADL+L + + N  ++  +        IG +S L    T+ Y
Sbjct: 208 ADLLLFVVD-NDLRQSEYEPLRRLADIGKRSLLVLNKTDLY 247


>gi|270308053|ref|YP_003330111.1| GTP-binding protein [Dehalococcoides sp. VS]
 gi|270153945|gb|ACZ61783.1| GTP-binding protein [Dehalococcoides sp. VS]
          Length = 403

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 11/194 (5%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E Q ++ +  M   L  L GQW    +H+             E       + +   
Sbjct: 127 ANTREGQLQVELAQMQYLLPRLAGQW----SHLERLGGGIGTRGPGESQLETDKRIIRTK 182

Query: 196 ILFLKN---DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           I  L++   ++++H    +    +R    + ++G++N+GKSSL NA+AK DV     +  
Sbjct: 183 IRSLQDHLDEVTTHRDLYRERRRMRGVPVVSLVGYTNSGKSSLLNAVAKTDVLAENKLFA 242

Query: 253 TTRDVLTIDLDLEGY-LVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           T  D  T  L + G   V ++DT G IR+    + K   + T  E+  ADL++ + +I +
Sbjct: 243 TL-DPTTRRLYINGLGNVLLTDTVGFIRKLPPAIVK-AFRATLEEINQADLLVHVVDITA 300

Query: 311 KKEISFPKNIDFIF 324
           K  +   + ++ I 
Sbjct: 301 KNAVEQCQTVEKIL 314


>gi|322387851|ref|ZP_08061459.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           infantis ATCC 700779]
 gi|321141353|gb|EFX36850.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           infantis ATCC 700779]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|312883732|ref|ZP_07743453.1| ribosomal biogenesis GTPase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368615|gb|EFP96146.1| ribosomal biogenesis GTPase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 314

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 9/90 (10%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           SS + +N IL L   ++ H  + ++G+ IR     +I+G  N GKS++ N LA + VA  
Sbjct: 92  SSVQEVNKILELCRKLAPH--REEIGKSIRT----MIMGIPNVGKSTIINTLAGRAVAQT 145

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            + P  TR    I+L      V +SDT GI
Sbjct: 146 GNQPAVTRRQQRINLQ---NGVVLSDTPGI 172


>gi|307705206|ref|ZP_07642076.1| conserved hypothetical protein [Streptococcus mitis SK597]
 gi|307621228|gb|EFO00295.1| conserved hypothetical protein [Streptococcus mitis SK597]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|307706601|ref|ZP_07643408.1| conserved hypothetical protein [Streptococcus mitis SK321]
 gi|307618056|gb|EFN97216.1| conserved hypothetical protein [Streptococcus mitis SK321]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|299146637|ref|ZP_07039705.1| probable GTPase EngC protein 2 [Bacteroides sp. 3_1_23]
 gi|298517128|gb|EFI41009.1| probable GTPase EngC protein 2 [Bacteroides sp. 3_1_23]
          Length = 362

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 18/117 (15%)

Query: 173 EADLDF---SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           ++DLDF   S EE + + S     N I      I    +  +L E I  G  +V +G S 
Sbjct: 160 KSDLDFDRQSVEEQINHIS-----NQIPVFFTSIHQPQTILRLRESISEGETVVFVGSSG 214

Query: 230 AGKSSLFNALAKKDVAIVTDI---PGTTRDVLT----IDLDLEGYLVKISDTAGIRE 279
            GKSSL NAL +K V + +DI    G  R   T    + ++  G L+   DT G+RE
Sbjct: 215 IGKSSLVNALCEKSVLLTSDISLSTGKGRHTSTRREMVLMNDSGVLI---DTPGVRE 268


>gi|315453296|ref|YP_004073566.1| GTP-binding protein ERA-like protein [Helicobacter felis ATCC
           49179]
 gi|315132348|emb|CBY82976.1| GTP-binding protein ERA homolog [Helicobacter felis ATCC 49179]
          Length = 297

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGYLVKI--SDTAG 276
           I ++G  NAGKS+L NAL  + +A+ +     TR  L   +   D +G   ++   DT G
Sbjct: 7   IALIGRPNAGKSTLLNALVNEHLALTSHKAHATRKALKAIVPYTDSQGNACQMVFVDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I     ++E+   + +   +++ DL+L L  ++
Sbjct: 67  IASPKKLLEQAMQEESMRALQDCDLVLFLASVH 99


>gi|300856554|ref|YP_003781538.1| putative GTP-binding protein [Clostridium ljungdahlii DSM 13528]
 gi|300436669|gb|ADK16436.1| putative GTP-binding protein [Clostridium ljungdahlii DSM 13528]
          Length = 595

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 35/187 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAK---------KDVAIVTDIPGTTRDVLTIDLDLE-GYLVK 270
           K+ ++G++N+GKS+L N L +         K+     D+   T D  T  ++LE G  + 
Sbjct: 363 KVSLVGYTNSGKSTLRNKLCEVAVTRENVNKEKVFEADMLFATLDTTTRAVELEDGRTIA 422

Query: 271 ISDTAGI--RETDDIVEKEGIKRTFLEVENADLIL-------------------LLKE-- 307
           ++DT G   +   D+VE    K T  EV+ ADL+L                   +L E  
Sbjct: 423 VTDTVGFIKKLPHDLVE--AFKSTLEEVQYADLLLHVVDASSDYAEEQIDAVNEVLSELD 480

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
           +N K  +     ID +     S +   Y       IS+  G  L+EL+ ++  +L +  K
Sbjct: 481 VNDKPVLIVLNKIDKLEDTKLSGIKDRYKNSNAIFISAKYGTNLDELLKRVLEMLPHNIK 540

Query: 368 KLPFSIP 374
           K  + IP
Sbjct: 541 KAEYLIP 547


>gi|74194747|dbj|BAE25976.1| unnamed protein product [Mus musculus]
          Length = 326

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 18/129 (13%)

Query: 167 HIRSFIEADL-DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ--GKLGEIIRNGYK-- 221
           H+    + DL D +E++ +     ++ L+++LF       +I Q   K+ E+IR  Y+  
Sbjct: 77  HLLVLNKMDLADLTEQQKIVQRLEEKGLSNVLFTNCVKDENIKQIVPKVMELIRCSYRYH 136

Query: 222 --------IVILGHSNAGKSSLFNALAKKDV-----AIVTDIPGTTRDVLTIDLDLEGYL 268
                   I+++G  N GKSSL N+L ++ +     A V   PG TR V +     E  L
Sbjct: 137 RAETPEYCIMVVGVPNVGKSSLINSLRRQHLRTGKAARVGGEPGITRAVTSRIQVCERPL 196

Query: 269 VKISDTAGI 277
           V + DT G+
Sbjct: 197 VFLLDTPGV 205


>gi|119474740|ref|ZP_01615093.1| predicted GTPase [marine gamma proteobacterium HTCC2143]
 gi|119450943|gb|EAW32176.1| predicted GTPase [marine gamma proteobacterium HTCC2143]
          Length = 473

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 14/92 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
           I ++GH+N GK+SL   L +++    V+  PGTTR V +  L + G  +V++ DT G  +
Sbjct: 11  IAVVGHTNVGKTSLIRTLTRRNSFGDVSSSPGTTRHVESQVLMVTGQKIVRLLDTPGFED 70

Query: 280 T----------DDIVEKEGIKR--TFLEVENA 299
           +          DD  EK GI R   FL+ + A
Sbjct: 71  SIGLFDTIETLDDGREKLGIDRLALFLQSKEA 102


>gi|33598806|ref|NP_886449.1| hypothetical protein BPP4321 [Bordetella parapertussis 12822]
 gi|33574936|emb|CAE39600.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 460

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I ++GH+N GK+SL   L +  D   V D PGTTR V       EG  + I + A I
Sbjct: 7   RIAVVGHTNTGKTSLLRTLTRNPDFGEVADQPGTTRHV-------EGARLAIDNAAAI 57


>gi|315928061|gb|EFV07380.1| ferrous iron transport protein B [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 615

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL K ++  V +  G T +  +     + Y  ++ D  G    
Sbjct: 5   KIALVGQPNVGKSLLINALCKANMK-VGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D   E+E I R FL   + D+I+
Sbjct: 64  DGYSEEEKITRHFLNQNDYDVIV 86


>gi|291543695|emb|CBL16804.1| ferrous iron transporter FeoB [Ruminococcus sp. 18P13]
          Length = 828

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGI 277
           G KI + G+ NAGK++LFNAL   +   V + PG T  V   +  L+G+  V I+D  GI
Sbjct: 2   GIKIALAGNPNAGKTTLFNALTGSN-QFVGNWPGVT--VEKKEGKLKGHSDVTITDLPGI 58

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL 303
                   +E + R +L  E  D IL
Sbjct: 59  YSLSPYTLEEVVARNYLIQERPDAIL 84


>gi|256810716|ref|YP_003128085.1| ferrous iron transport protein B [Methanocaldococcus fervens AG86]
 gi|256793916|gb|ACV24585.1| ferrous iron transport protein B [Methanocaldococcus fervens AG86]
          Length = 669

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS+LFNAL  ++V I  + PG T +    + +  G   K+ D  G+  
Sbjct: 5   YEIALIGNPNVGKSTLFNALTGENVYI-GNWPGVTVEKKEGEFEYNGKKFKVVDLPGVYS 63

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL 303
            T D ++ E I R ++  E  DL++
Sbjct: 64  LTADSID-EIIARDYIINEKPDLVV 87


>gi|291456693|ref|ZP_06596083.1| GTP-binding protein Era [Bifidobacterium breve DSM 20213]
 gi|291381970|gb|EFE89488.1| GTP-binding protein Era [Bifidobacterium breve DSM 20213]
          Length = 335

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL  K +AI +  P TTR  +   L  +   + + DT G
Sbjct: 26  RSGF-VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTTDNAQLVLVDTPG 84

Query: 277 I 277
           I
Sbjct: 85  I 85


>gi|220927100|ref|YP_002502402.1| GTP-binding protein Era [Methylobacterium nodulans ORS 2060]
 gi|219951707|gb|ACL62099.1| GTP-binding protein Era [Methylobacterium nodulans ORS 2060]
          Length = 320

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 32/185 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTA 275
           R G+ + ++G  NAGKS+L N+L    V+IV+    TTR  L   + +EG   +   DT 
Sbjct: 26  RAGF-VALIGVPNAGKSTLLNSLVGSKVSIVSRKVQTTR-ALVRGIAMEGSAQIVFVDTP 83

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------------EISFPK--- 318
           GI      +++  +   +    +AD + LL  I+++K              E+  PK   
Sbjct: 84  GIFAPKRRLDRAMVTSAWSGAADADAVCLL--IDARKGVDAEVDALLDRLPELRRPKILV 141

Query: 319 --NIDFIFIGTKSDLYSTYTEE--YDH--LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              ID I      +L ++      +DH  ++S+ TG+G+ +L    + +L+      P+ 
Sbjct: 142 LNKIDVIARERLLELAASLNARLPFDHTFMVSALTGDGVADL----RRVLAGLMPPGPWL 197

Query: 373 IPSHK 377
            P  +
Sbjct: 198 YPEDQ 202


>gi|38426817|gb|AAR20450.1| FeoB [Campylobacter jejuni]
          Length = 543

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL K ++  V +  G T +  +     + Y  ++ D  G    
Sbjct: 5   KIALVGQPNVGKSLLINALCKANMK-VGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D   E+E I R FL   + D+I+
Sbjct: 64  DGYSEEEKITRHFLNQNDYDVIV 86


>gi|33594656|ref|NP_882300.1| hypothetical protein BP3801 [Bordetella pertussis Tohama I]
 gi|33603881|ref|NP_891441.1| hypothetical protein BB4907 [Bordetella bronchiseptica RB50]
 gi|33564732|emb|CAE44056.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|33578006|emb|CAE35271.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
 gi|332384067|gb|AEE68914.1| hypothetical protein BPTD_3744 [Bordetella pertussis CS]
          Length = 460

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I ++GH+N GK+SL   L +  D   V D PGTTR V       EG  + I + A I
Sbjct: 7   RIAVVGHTNTGKTSLLRTLTRNPDFGEVADQPGTTRHV-------EGARLAIDNAAAI 57


>gi|331268972|ref|YP_004395464.1| ferrous iron transport protein B [Clostridium botulinum BKT015925]
 gi|329125522|gb|AEB75467.1| ferrous iron transport protein B [Clostridium botulinum BKT015925]
          Length = 591

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIR 278
           + ++G+ N GK++LFNAL   +   V +  G T +        EGYL   +KI D  GI 
Sbjct: 4   VALVGNPNVGKTTLFNALTGSN-QYVGNWAGVTVE------RKEGYLNKCIKIVDLPGIY 56

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
             D    +E + + FL   +AD+I+
Sbjct: 57  AMDTYSNEEKVSKNFLLTGDADVIV 81


>gi|319939798|ref|ZP_08014154.1| GTP-binding protein [Streptococcus anginosus 1_2_62CV]
 gi|319811011|gb|EFW07326.1| GTP-binding protein [Streptococcus anginosus 1_2_62CV]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 41/170 (24%)

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
           +S   QW+ +  H       D+  +  ++ Q  + KE++  I                 E
Sbjct: 118 TSKVAQWLTERAHEEGLRPVDVVLTSAQNKQ--AIKELIEKI-----------------E 158

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
             R G  + ++G +N GKS+L NA+ +     K+V   +  PGTT D + I L       
Sbjct: 159 HYRKGRDVYVVGVTNVGKSTLINAIIQEITGDKEVITTSRFPGTTLDKIEIPL------- 211

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             +D + I +T  I+ +  +   +L  +N      LK I+ KKEI  PK 
Sbjct: 212 --ADGSHIYDTPGIIHRHQMAH-YLSAKN------LKYISPKKEIK-PKT 251


>gi|288905301|ref|YP_003430523.1| GTP-binding protein [Streptococcus gallolyticus UCN34]
 gi|306831380|ref|ZP_07464539.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325978286|ref|YP_004288002.1| ribosomal biogenesis GTPase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732027|emb|CBI13592.1| putative conserved GTP-binding protein [Streptococcus gallolyticus
           UCN34]
 gi|304426440|gb|EFM29553.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178214|emb|CBZ48258.1| ribosomal biogenesis GTPase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 284

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 12/108 (11%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG-----YKIVILGHSNAG 231
           ++ E++ ++  +        + L  D +  +   KL ++   G      + +I+G  NAG
Sbjct: 74  NYFEKQGIKTLAVNSKEQATVKLVTDAARSLMADKLAKLRERGIQKETLRTMIIGIPNAG 133

Query: 232 KSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           KS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 134 KSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|160915180|ref|ZP_02077393.1| hypothetical protein EUBDOL_01188 [Eubacterium dolichum DSM 3991]
 gi|158432979|gb|EDP11268.1| hypothetical protein EUBDOL_01188 [Eubacterium dolichum DSM 3991]
          Length = 292

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 12/83 (14%)

Query: 202 DISSHISQGKLGEIIRNG-----YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           D S  + + K+  +IR G      + +++G  N GKS+  N ++KK +A   D PG T+ 
Sbjct: 106 DASQQLMKAKIERMIRRGIRPRAMRAMVVGVPNVGKSTFINRISKKKIATTGDRPGVTKA 165

Query: 257 VL--TIDLDLEGYLVKISDTAGI 277
           +    ++ DLE     + DT G+
Sbjct: 166 LQWSRVNKDLE-----LLDTPGV 183


>gi|89054736|ref|YP_510187.1| GTP-binding protein, HSR1-related [Jannaschia sp. CCS1]
 gi|88864285|gb|ABD55162.1| GTP-binding protein HflX [Jannaschia sp. CCS1]
          Length = 435

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 26/169 (15%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y IV L G++NAGKS+LFN L   DV +  D+   T D     + L +G  V +SDT G 
Sbjct: 214 YPIVALVGYTNAGKSTLFNRLTGADV-MAKDMLFATLDPTMRAVTLPDGTDVILSDTVGF 272

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF------------- 324
                       + T  EV +ADLI+ +++I+  + +   +++  I              
Sbjct: 273 ISDLPTQLVAAFRATLEEVLDADLIVHVRDISHPQTVEQAEDVHAILGDLGVSDQSAQLE 332

Query: 325 IGTKSDLYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILS 363
           +  K DL     +    +           S+ TG G+++ +  +   LS
Sbjct: 333 VWNKVDLLDEAAQTARQVEADRNEAIFATSALTGAGMDDFLTAVSHTLS 381


>gi|24376139|ref|NP_720182.1| GTPase EngB [Shewanella oneidensis MR-1]
 gi|81588968|sp|Q8E8J7|ENGB_SHEON RecName: Full=Probable GTP-binding protein EngB
 gi|24351179|gb|AAN57626.1|AE015898_9 GTP-binding protein EngB [Shewanella oneidensis MR-1]
          Length = 219

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLD 263
           +H+ Q   G++   G +I   G SNAGKSS  NAL  +K++A  +  PG T+ +   +LD
Sbjct: 21  AHLDQYLPGDV---GVEIAFAGRSNAGKSSALNALTEQKNLARTSKTPGRTQLINVFELD 77

Query: 264 LEGYLVKI 271
            +  LV +
Sbjct: 78  AQRRLVDL 85


>gi|332702330|ref|ZP_08422418.1| GTP-binding protein Era-like-protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552479|gb|EGJ49523.1| GTP-binding protein Era-like-protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 307

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+  N +  + VAIV+  P TTR+ ++     E   V   DT G+ +  
Sbjct: 12  VALMGPPNAGKSTFLNHVLGQKVAIVSPKPQTTRNQISGIWTTERGQVVFLDTPGVHQLR 71

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             + K  ++  +  V  ++++L+ 
Sbjct: 72  GKMNKFLLQSAWQAVAQSNVVLVF 95


>gi|330993264|ref|ZP_08317200.1| GTP-binding protein hflX [Gluconacetobacter sp. SXCC-1]
 gi|329759666|gb|EGG76174.1| GTP-binding protein hflX [Gluconacetobacter sp. SXCC-1]
          Length = 436

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 29/179 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFNAL    V    D    T D     + L  G  V +SDT G    
Sbjct: 208 VALVGYTNAGKSTLFNALTGASV-YAQDQLFATLDPTMRGIQLPSGRRVILSDTVGF--I 264

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG------------ 326
            D+  +     + T  EV  AD+IL +++++     S  +++  +  G            
Sbjct: 265 SDLPTELIAAFRATLEEVAEADIILHVRDVSHPDSASQRQDVIEVLEGMARNGTIEEDWQ 324

Query: 327 -------TKSDLY----STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                   K+DL     +      + +IS+ TG+GL +L+  I   ++   +   + +P
Sbjct: 325 GRVIEVLNKADLVGGREAVGARPGNVVISAITGDGLPDLLAAIDERMTRAMEVALYRVP 383


>gi|304404227|ref|ZP_07385889.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus
           curdlanolyticus YK9]
 gi|304347205|gb|EFM13037.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus
           curdlanolyticus YK9]
          Length = 290

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 7/80 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L   I+  +S+G    I     + +I+G  N GKS+L N LA +++AI  D PG T+  
Sbjct: 103 LLHEKIAKQLSKG----INPRAVRALIVGIPNVGKSTLINRLAGRNIAITGDRPGVTKGQ 158

Query: 258 LTIDLDLEGYLVKISDTAGI 277
             I +  E  L+   DT GI
Sbjct: 159 QWIKVGTEMELL---DTPGI 175


>gi|37089385|gb|AAQ88281.1| ferrous iron uptake protein [Campylobacter jejuni]
          Length = 609

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL K ++  V +  G T +  +     + Y  ++ D  G    
Sbjct: 5   KIALVGQPNVGKSLLINALCKANMK-VGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D   E+E I R FL   + D+I+
Sbjct: 64  DGYSEEEKITRHFLNQNDYDVIV 86


>gi|28900567|ref|NP_800222.1| ribosomal biogenesis GTPase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836478|ref|ZP_01989145.1| GTP-binding protein [Vibrio parahaemolyticus AQ3810]
 gi|260365447|ref|ZP_05777984.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio
           parahaemolyticus K5030]
 gi|260877512|ref|ZP_05889867.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio
           parahaemolyticus AN-5034]
 gi|260897547|ref|ZP_05906043.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio
           parahaemolyticus Peru-466]
 gi|260901749|ref|ZP_05910144.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio
           parahaemolyticus AQ4037]
 gi|28808947|dbj|BAC62055.1| putative GTPase YlqF [Vibrio parahaemolyticus RIMD 2210633]
 gi|149750380|gb|EDM61125.1| GTP-binding protein [Vibrio parahaemolyticus AQ3810]
 gi|308087142|gb|EFO36837.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio
           parahaemolyticus Peru-466]
 gi|308090893|gb|EFO40588.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio
           parahaemolyticus AN-5034]
 gi|308108929|gb|EFO46469.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio
           parahaemolyticus AQ4037]
 gi|308114303|gb|EFO51843.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio
           parahaemolyticus K5030]
 gi|328470509|gb|EGF41420.1| GTPase YlqF [Vibrio parahaemolyticus 10329]
          Length = 314

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 21/125 (16%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212
           EL+ L   WID L   ++     +  SE ++V         + I+ L   ++ H  + ++
Sbjct: 69  ELTQL---WIDHLEKEQNVKAMAITTSEPQEV---------HKIMELCRKLAPH--REEV 114

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G+ IR     +I+G  N GKS++ N LA + +A+  + P  TR    I+L   G +  +S
Sbjct: 115 GKNIRT----MIMGIPNVGKSTIINTLAGRTIAVTGNQPAVTRRQQRINLQ-NGIV--LS 167

Query: 273 DTAGI 277
           DT GI
Sbjct: 168 DTPGI 172


>gi|260907227|ref|ZP_05915549.1| GTP-binding proten HflX [Brevibacterium linens BL2]
          Length = 491

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 31/181 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G++NAGKSSL N L   +V    A+   +  T R   T D    G     +DT G 
Sbjct: 268 VAIVGYTNAGKSSLLNQLTDAEVMVQNALFATLDPTVRQSRTAD----GITFTYTDTVGF 323

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI---SFPKNIDFIFI 325
                    E  + T  E  ++DL+L +          +I++ +E+       +I  + +
Sbjct: 324 VRNLPHQLVEAFRSTLEEASDSDLLLHIVDASHPDPHGQIHAVREVLKDVETGDIPELLV 383

Query: 326 GTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             K+D         L++ Y E     +S+ T EG+ EL+  I+S+L +   ++   IP  
Sbjct: 384 FNKADIADEAVITGLHAEYPEA--RFVSAVTKEGVGELVETIESMLPSPNIEVTVLIPYE 441

Query: 377 K 377
           +
Sbjct: 442 R 442


>gi|226939621|ref|YP_002794694.1| HflX [Laribacter hongkongensis HLHK9]
 gi|226714547|gb|ACO73685.1| HflX [Laribacter hongkongensis HLHK9]
          Length = 284

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 73/158 (46%), Gaps = 26/158 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAG-I 277
           + + I+G++NAGKS+LFNAL K   A   D    T D  +  L L   L V +SDT G I
Sbjct: 117 FSVSIVGYTNAGKSTLFNALTKAR-AYAADQLFATLDTTSRRLYLNEQLSVVLSDTVGFI 175

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL------------LLKEINSK-KEISFPKNIDFIF 324
           R+    +  E  K T  E   ADL+L             L E+N   KEI     ID + 
Sbjct: 176 RDLPHSL-VEAFKATLEETVRADLLLHVVDCASDTRETQLAEVNKVLKEIE-ADGIDQLI 233

Query: 325 IGTKSDLY----STYTEEYDHLI----SSFTGEGLEEL 354
           I  K DL     +   +E   ++    S+  GEGL+ L
Sbjct: 234 IWNKCDLKGLSPAIERDETGRIVAVRLSALKGEGLDLL 271


>gi|254424176|ref|ZP_05037894.1| GTP-binding protein Era, putative [Synechococcus sp. PCC 7335]
 gi|196191665|gb|EDX86629.1| GTP-binding protein Era, putative [Synechococcus sp. PCC 7335]
          Length = 431

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N L  + +AI + +  TTR+ L   L      +   DT G
Sbjct: 135 RSGF-VSIVGRPNVGKSTLMNYLVGQKIAITSPVAQTTRNRLQGILTTPQAQIIFVDTPG 193

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           I +    + K  ++   + + + D++L + E  S
Sbjct: 194 IHKPHHELGKVLVQNARVAIGSVDVVLFVVEATS 227


>gi|163854410|ref|YP_001628708.1| hypothetical protein Bpet0106 [Bordetella petrii DSM 12804]
 gi|163258138|emb|CAP40437.1| conserved hypothetical protein [Bordetella petrii]
          Length = 467

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGIR 278
           KI ++GH+N GK+SL   L +      V D PGTTR V    L L+G  V +  DT G+ 
Sbjct: 8   KIAVVGHTNTGKTSLLRTLTRDSGFGDVADSPGTTRHVEGARLRLDGRPVLEWFDTPGME 67

Query: 279 ETDDIVE 285
           ++  ++E
Sbjct: 68  DSIALLE 74


>gi|297619781|ref|YP_003707886.1| small GTP-binding protein [Methanococcus voltae A3]
 gi|297378758|gb|ADI36913.1| small GTP-binding protein [Methanococcus voltae A3]
          Length = 186

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 34/177 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT----------IDLDLEGYLV 269
           YKI ++G  N+GKSS+ N +  K ++ V+++ GTT+  +           +  + E   +
Sbjct: 8   YKIAMMGPENSGKSSIINKIFGKSISEVSEVGGTTKKPVKKFWGKLKIGRLKQNPEFADI 67

Query: 270 KISDTAGIRETDD---IVEKEGIKRTFLEVENADLIL------------------LLKEI 308
             +D  G+   +D   ++    +++TF E++++D+I+                  LLK  
Sbjct: 68  TFADLGGLYSGEDKSVVMVGNVLEKTFEEIDSSDMIIHVIDAKEGLFKSFEKLHHLLKYR 127

Query: 309 NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELINKIKSIL 362
             K  I      D +    ++ L     E  +   +  S+ + EG+ ELIN I +IL
Sbjct: 128 YQKPIIVIVNKCDLLTPSERNSLNEAIEERLNNKVYFTSAMSYEGINELINVIITIL 184


>gi|220928031|ref|YP_002504940.1| GTP-binding protein Era [Clostridium cellulolyticum H10]
 gi|254783293|sp|B8I736|ERA_CLOCE RecName: Full=GTPase Era
 gi|219998359|gb|ACL74960.1| GTP-binding protein Era [Clostridium cellulolyticum H10]
          Length = 298

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275
           ++G+ + ++G  N GKS+L N +  + +AI+++ P TTR+ +  +  + E  L+ I DT 
Sbjct: 4   KSGF-VSVIGRPNVGKSTLLNTITGQKIAIMSNKPQTTRNTIRGVITNKECQLILI-DTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           GI +    + +  +      ++  DLIL L E N++
Sbjct: 62  GIHKPKTKLGEYMVNVASETIKEVDLILFLVEANTQ 97


>gi|71651805|ref|XP_814572.1| GTPase [Trypanosoma cruzi strain CL Brener]
 gi|70879557|gb|EAN92721.1| GTPase, putative [Trypanosoma cruzi]
          Length = 602

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G+ N GKSSL N L +K V  V  IPG T+    + L    +L+        RET++ 
Sbjct: 323 VIGYPNVGKSSLINTLRRKSVCKVAPIPGETKVWQYVALTKTIFLIDCPGVIYDRETNND 382

Query: 284 VEKEGIKRTFLEVE---NADLILLLKEINSKKEISFPKNI 320
           V  + + +  + VE   NAD   +   +N+  EI  PK+I
Sbjct: 383 V--QAVLKGVVRVERLGNADKTDV---VNTVLEIVKPKDI 417


>gi|327474217|gb|EGF19624.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK408]
          Length = 283

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 12/83 (14%)

Query: 202 DISSHISQGKLGEIIRNGYKI-----VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR- 255
           D +  +   KL      G +I     +I+G  NAGKS+L N LA K +AIV + PG T+ 
Sbjct: 99  DAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGKKIAIVGNKPGVTKG 158

Query: 256 -DVLTIDLDLEGYLVKISDTAGI 277
              L  + DLE     I DT GI
Sbjct: 159 QQWLKSNKDLE-----ILDTPGI 176


>gi|295115531|emb|CBL36378.1| GTP-binding protein Era [butyrate-producing bacterium SM4/1]
          Length = 301

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + +AI +D P TTR+ + T+  D  G ++ + DT GI + 
Sbjct: 10  VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFL-DTPGIHKA 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + + +  +      ++  D+IL L E
Sbjct: 69  KNKLGEYMVSVAEHTLKEVDVILWLVE 95


>gi|239627753|ref|ZP_04670784.1| GTP-binding protein Era [Clostridiales bacterium 1_7_47_FAA]
 gi|239517899|gb|EEQ57765.1| GTP-binding protein Era [Clostridiales bacterium 1_7_47FAA]
          Length = 303

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + +AI +D P TTR+ + T+  D  G ++ + DT GI + 
Sbjct: 12  VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDDRGQIIFL-DTPGIHKA 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + + +  +      + + D+IL L E
Sbjct: 71  KNKLGEYMVNVAEHTLRDVDVILWLVE 97


>gi|119355958|ref|YP_910602.1| ferrous iron transport protein B [Chlorobium phaeobacteroides DSM
           266]
 gi|119353307|gb|ABL64178.1| ferrous iron transport protein B [Chlorobium phaeobacteroides DSM
           266]
          Length = 712

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + G  + + G+ N GKSSLFN L  A++ V    +  G T +     LD +GY +K+ D 
Sbjct: 4   KKGISVALAGNPNCGKSSLFNVLTGARQKVG---NFSGVTIEKHEGFLDFKGYSLKVVDL 60

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            GI        +E + R +L  E  D+++
Sbjct: 61  PGIYSLTPYSPEEIVTRRYLIDEKPDVVV 89


>gi|323701163|ref|ZP_08112838.1| small GTP-binding protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533765|gb|EGB23629.1| small GTP-binding protein [Desulfotomaculum nigrificans DSM 574]
          Length = 188

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+V++G+ N GKS LFN L    V  V++ PGTT +V      +     ++ DT G+   
Sbjct: 26  KVVLVGNPNVGKSVLFNRLTGAYVT-VSNYPGTTVEVSRGKGKIGDEYFEVVDTPGMYSL 84

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
             I E+E + R  L  E+ + ++
Sbjct: 85  LPITEEEAVSRRLLLNEHPEAVV 107


>gi|322825425|gb|EFZ30388.1| GTPase, putative [Trypanosoma cruzi]
          Length = 602

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G+ N GKSSL N L +K V  V  IPG T+    + L    +L+        RET++ 
Sbjct: 323 VIGYPNVGKSSLINTLRRKSVCKVAPIPGETKVWQYVALTKTIFLIDCPGVIYDRETNND 382

Query: 284 VEKEGIKRTFLEVE---NADLILLLKEINSKKEISFPKNI 320
           V  + + +  + VE   NAD   +   +N+  EI  PK+I
Sbjct: 383 V--QAVLKGVVRVERLGNADKTDV---VNTVLEIVKPKDI 417


>gi|320546753|ref|ZP_08041064.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus equinus
           ATCC 9812]
 gi|320448632|gb|EFW89364.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus equinus
           ATCC 9812]
          Length = 284

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 7/65 (10%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKIS 272
           I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I 
Sbjct: 117 IQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----IL 171

Query: 273 DTAGI 277
           DT GI
Sbjct: 172 DTPGI 176


>gi|315425254|dbj|BAJ46922.1| GTP-binding protein HflX [Candidatus Caldiarchaeum subterraneum]
 gi|315427488|dbj|BAJ49092.1| GTP-binding protein HflX [Candidatus Caldiarchaeum subterraneum]
          Length = 412

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 41/209 (19%)

Query: 173 EADLDFSEEEDVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           EAD+ ++E    +  S+ K+ L  I   KN +     +G L  +   GY       +NAG
Sbjct: 147 EADVYYNE--VFRRISTIKQKLKQIRMRKNLVRQRRLEGGLPTVALTGY-------TNAG 197

Query: 232 KSSLFNALAKKD----VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
           K++LFN  + ++      + T +  T R V        G    +SDT G  +    +  E
Sbjct: 198 KTTLFNRFSGEEHPAGPQLFTTLSTTARIV-----KFRGRKAYLSDTVGFIKNLPHLLVE 252

Query: 288 GIKRTFLEVENADLILLLKEINSKKEISFP--------------KNIDFIFIGTKSDLYS 333
               T  E   ADL+LL+ +I+ +K +                 KN+  + +  K D  +
Sbjct: 253 SFHSTLSEFIYADLLLLVVDISEEKSVVESKLNTCLNVLDEVGVKNVPILVVFNKIDAAA 312

Query: 334 TYTEEYDHL--------ISSFTGEGLEEL 354
            Y E+ + +        +S++TG+GL+ L
Sbjct: 313 DYREKIESINPEFRYVAVSAWTGQGLDTL 341


>gi|315917028|ref|ZP_07913268.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690903|gb|EFS27738.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 362

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+  KN+   +    K+     NG ++++LG +N GKSS+ N L  K+   V+  PGTT 
Sbjct: 136 IVSCKNNYGMNGVLRKIQHFYPNGVEVLVLGVTNVGKSSVINRLLGKNRVTVSKYPGTT- 194

Query: 256 DVLTIDLDLEGYLVKISDTAGI----RETDDIVEKEGIK 290
            +L+   ++ G  + + DT G+    R +D ++E++ ++
Sbjct: 195 -LLSTMNEILGTKLCLIDTPGLIPEGRFSDLMIEEDQLR 232


>gi|255327124|ref|ZP_05368199.1| GTP-binding protein Era [Rothia mucilaginosa ATCC 25296]
 gi|255295742|gb|EET75084.1| GTP-binding protein Era [Rothia mucilaginosa ATCC 25296]
          Length = 380

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+  ++ G  NAGKS+L NA+  + VAI ++ P TTR  +   +  + Y + + DT G
Sbjct: 27  RSGFASLV-GRPNAGKSTLTNAMVGQKVAITSNRPQTTRHTIRGIVHKDEYQLILVDTPG 85

Query: 277 I 277
           I
Sbjct: 86  I 86


>gi|253681775|ref|ZP_04862572.1| putative ferrous iron transport protein B [Clostridium botulinum D
           str. 1873]
 gi|253561487|gb|EES90939.1| putative ferrous iron transport protein B [Clostridium botulinum D
           str. 1873]
          Length = 591

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIR 278
           + ++G+ N GK++LFNAL   +   V +  G T +        EG+L   +KI D  GI 
Sbjct: 4   VALVGNPNVGKTTLFNALTGSN-QYVGNWAGVTVE------RKEGFLNKCIKIVDLPGIY 56

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
             D    +E + + FL   NAD+I+
Sbjct: 57  AMDTYSNEEKVSKDFLLAGNADVII 81


>gi|308235186|ref|ZP_07665923.1| GTP-binding protein Era [Gardnerella vaginalis ATCC 14018]
 gi|311114841|ref|YP_003986062.1| GTP-binding protein Era [Gardnerella vaginalis ATCC 14019]
 gi|310946335|gb|ADP39039.1| GTP-binding protein Era [Gardnerella vaginalis ATCC 14019]
          Length = 354

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 218 NGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           NGYK   + ++G  N GKS+L NAL    +AI +  P TTR  +   L      + + DT
Sbjct: 42  NGYKSGFVAVVGRPNVGKSTLMNALIGTQIAIASSRPETTRKAIRGILTTPNAQMVLVDT 101

Query: 275 AGI 277
            GI
Sbjct: 102 PGI 104


>gi|218563002|ref|YP_002344781.1| ferrous iron transport protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|76364188|sp|Q9PMQ9|FEOB_CAMJE RecName: Full=Ferrous iron transport protein B homolog
 gi|112360708|emb|CAL35507.1| ferrous iron transport protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284926613|gb|ADC28965.1| ferrous iron transport protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315929529|gb|EFV08721.1| ferrous iron transport protein B [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 613

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL K ++  V +  G T +  +     + Y  ++ D  G    
Sbjct: 5   KIALVGQPNVGKSLLINALCKANMK-VGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D   E+E I R FL   + D+I+
Sbjct: 64  DGYSEEEKITRHFLNQNDYDVIV 86


>gi|332975861|gb|EGK12739.1| GTP-binding protein Era [Desmospora sp. 8437]
          Length = 300

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  + VAI++D P TTR+ +      E   +   DT GI +  
Sbjct: 11  VTLIGRPNVGKSTLLNQVLGQKVAIMSDKPQTTRNKIRGVYTTEAEQIIFLDTPGIHKPK 70

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +    ++      E  D+IL L
Sbjct: 71  SRLGDWMVQTARETFEEVDVILFL 94


>gi|326316028|ref|YP_004233700.1| GTP-binding protein Era [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372864|gb|ADX45133.1| GTP-binding protein Era [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 349

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T     EG      DT G +   
Sbjct: 59  IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTREGTQFVFVDTPGFQTRH 118

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKEINS 310
                + + +T +  + + DLIL + E  S
Sbjct: 119 STALNKSLNKTVMGAIGDVDLILFVVEAGS 148


>gi|268592767|ref|ZP_06126988.1| putative GTP-binding protein [Providencia rettgeri DSM 1131]
 gi|291311544|gb|EFE51997.1| putative GTP-binding protein [Providencia rettgeri DSM 1131]
          Length = 287

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 38/69 (55%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L ++I     I ++G + AGKSSL NAL +  ++ V+++ G TR     ++ +  + +  
Sbjct: 23  LNKLINYSPTIGLMGKTGAGKSSLINALFQSALSPVSNVSGCTRQAQLFNMTINNHTLTF 82

Query: 272 SDTAGIRET 280
            D  G+ E+
Sbjct: 83  IDLPGVGES 91


>gi|257465871|ref|ZP_05630182.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 372

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+  KN+   +    K+     NG ++++LG +N GKSS+ N L  K+   V+  PGTT 
Sbjct: 146 IVSCKNNYGMNGVLRKIQHFYPNGVEVLVLGVTNVGKSSVINRLLGKNRVTVSKYPGTT- 204

Query: 256 DVLTIDLDLEGYLVKISDTAGI----RETDDIVEKEGIK 290
            +L+   ++ G  + + DT G+    R +D ++E++ ++
Sbjct: 205 -LLSTMNEILGTKLCLIDTPGLIPEGRFSDLMIEEDQLR 242


>gi|119493602|ref|ZP_01624266.1| GTP-binding protein Era [Lyngbya sp. PCC 8106]
 gi|119452592|gb|EAW33775.1| GTP-binding protein Era [Lyngbya sp. PCC 8106]
          Length = 312

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 215 IIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           I  +GYK   + I+G  N GKS+L N +  + +AI + +  TTR+ L   L      +  
Sbjct: 13  IAPDGYKSGFVGIIGRPNVGKSTLMNQMVGQKIAITSPVAQTTRNRLRGILTTPEAQIIF 72

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            DT GI +    + +  +K   + + + D++L +
Sbjct: 73  VDTPGIHKPHHQLGQVLVKNAQIAIRSVDVLLFV 106


>gi|86151967|ref|ZP_01070180.1| ferrous iron transport protein B [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124833|ref|YP_004066837.1| ferrous iron transport protein B [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841075|gb|EAQ58324.1| ferrous iron transport protein B [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315018555|gb|ADT66648.1| ferrous iron transport protein B [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 613

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL K ++  V +  G T +  +     + Y  ++ D  G    
Sbjct: 5   KIALVGQPNVGKSLLINALCKANMK-VGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D   E+E I R FL   + D+I+
Sbjct: 64  DGYSEEEKITRHFLNQNDYDVIV 86


>gi|331703462|ref|YP_004400149.1| GTP binding protein Era [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328802017|emb|CBW54171.1| GTP binding protein Era homolog [Mycoplasma mycoides subsp. capri
           LC str. 95010]
          Length = 301

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 31/170 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGI--- 277
           + I+G  N GKS+L N L  + ++IVT+ P TTR ++  I    + Y +   DT G+   
Sbjct: 9   VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDQYQIVFIDTPGVHTS 68

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISF---PKNIDF--IFIGTK 328
            ++ D  +    +K T    ++ D+IL L    E   K ++      KN+D   I + TK
Sbjct: 69  KKQLDKFLNTSALKST----KDVDVILFLAPSDEAIGKNDLFLLKQIKNLDVFKILVITK 124

Query: 329 SD------------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSN 364
           +D             +S++ +++D +I  SS     +E+L+  I + LS+
Sbjct: 125 ADNVTKEQLILKANEWSSFQDQFDEIIITSSIINLNIEKLLELIVNNLSD 174


>gi|327469111|gb|EGF14583.1| GTP-binding protein [Streptococcus sanguinis SK330]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L      
Sbjct: 158 EHCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L  +N      LK I+ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLSAKN------LKYISPKKEIK-PKT 251


>gi|327458847|gb|EGF05195.1| GTP-binding protein [Streptococcus sanguinis SK1057]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L      
Sbjct: 158 EHCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L  +N      LK I+ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLSAKN------LKYISPKKEIK-PKT 251


>gi|291547170|emb|CBL20278.1| GTP-binding protein HflX [Ruminococcus sp. SR1/5]
          Length = 411

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 47/211 (22%)

Query: 190 KEVLNDILFLKNDISS---HISQ-GKLGEIIRNGYKI------VILGHSNAGKSSLFNAL 239
           K++  D   ++N IS+    +SQ  K  E+IR+   +       I+G++NAGKS+L N L
Sbjct: 159 KKLETDRRLIRNRISALKQELSQVEKHRELIRSRRAVGNLKTAAIVGYTNAGKSTLLNTL 218

Query: 240 AKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTF 293
               V     +   +  TTR +LT+D   +G  + ++DT G IR+   ++V  E  K T 
Sbjct: 219 TGASVLSEDKLFATLDPTTR-LLTLD---DGQQLLLTDTVGFIRKLPHNLV--EAFKSTL 272

Query: 294 LEVENADLIL-------------------LLKEINS--KKEISFPKNIDFIFIGTKSDLY 332
            E + AD I+                    LKE+ +  KK I+     D +   +  DL 
Sbjct: 273 EEAKYADYIIHVVDASNPQAEIQMHIVYETLKELGALGKKTITLFNKQDRVSGESFRDLR 332

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILS 363
           + +T +    IS+ TGEGLEE    +  IL+
Sbjct: 333 ADHTLK----ISARTGEGLEEFKQLLSEILA 359


>gi|315499852|ref|YP_004088655.1| gtp-binding proten hflx [Asticcacaulis excentricus CB 48]
 gi|315417864|gb|ADU14504.1| GTP-binding proten HflX [Asticcacaulis excentricus CB 48]
          Length = 448

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 34/170 (20%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGI 277
           Y IV L G++NAGKS+LFN L + +V +  D+   T D     L L G    I SDT G 
Sbjct: 218 YPIVALVGYTNAGKSTLFNHLTRAEV-LAKDMLFATLDTTLRTLKLPGGRAAIISDTVGF 276

Query: 278 RETDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL-YST 334
               D+  +     + T  EV  ADLIL ++++++ +  +  +++  +      DL  S 
Sbjct: 277 --ISDLPHELVAAFRATLEEVLEADLILHVRDMSNPESDAQAQDVMQVLTHIHPDLDKSR 334

Query: 335 YTEEYDH--------------------------LISSFTGEGLEELINKI 358
             E ++                           ++S+ TGEG+E+L++ I
Sbjct: 335 LIEVWNKIDLLDEEARDILYSRAVLDRAMNKPIMVSAITGEGIEKLLSDI 384


>gi|149199892|ref|ZP_01876921.1| probable GTP binding protein [Lentisphaera araneosa HTCC2155]
 gi|149137063|gb|EDM25487.1| probable GTP binding protein [Lentisphaera araneosa HTCC2155]
          Length = 205

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 24/37 (64%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           +IV  G SNAGKSSL N L +  +A ++  PG TR V
Sbjct: 32  RIVFAGRSNAGKSSLLNCLTRSKIAQISREPGKTRKV 68


>gi|77918387|ref|YP_356202.1| GTPases [Pelobacter carbinolicus DSM 2380]
 gi|77544470|gb|ABA88032.1| predicted GTPase [Pelobacter carbinolicus DSM 2380]
          Length = 280

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           N + K  L  ++ L   +  H  +G  G+ +R    I+I+G  N GKS+L N L  + +A
Sbjct: 87  NATRKAELTRLVRLSRSLVPH--RGGPGKPLR----IMIVGIPNVGKSTLINTLCGRKIA 140

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            V D P  TR    +DL   G L  + DT G+
Sbjct: 141 KVGDKPAITRSAQQVDLR-NGIL--LFDTPGV 169


>gi|256825566|ref|YP_003149526.1| GTP-binding proten HflX [Kytococcus sedentarius DSM 20547]
 gi|256688959|gb|ACV06761.1| GTP-binding proten HflX [Kytococcus sedentarius DSM 20547]
          Length = 517

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 23/176 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +VI G++NAGKSSL N L +  V +   +  T    +      +G +  ++DT G   + 
Sbjct: 295 VVIAGYTNAGKSSLLNRLTRAGVLVENQLFATLDPTVRRTETADGRVFTLADTVGFVRSL 354

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI-------SFPKNIDFIFI 325
                E  + T  EV +ADL+L +          +I++ +E+           +++ I +
Sbjct: 355 PHQLVEAFRSTLEEVADADLVLHVVDGSHPDPENQISAVREVLSEVLDEKGADSMNEIIV 414

Query: 326 GTKSDLYST-------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             K+D            TE+    +S+ TG+G+ EL   ++S L     ++   +P
Sbjct: 415 INKADAADPEVVARLLRTEKRSIAVSARTGQGITELRELVESELPRPDIEVDVVVP 470


>gi|125717436|ref|YP_001034569.1| GTP-binding protein YqeH [Streptococcus sanguinis SK36]
 gi|125497353|gb|ABN44019.1| Conserved GTPase, putative [Streptococcus sanguinis SK36]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L      
Sbjct: 158 EHCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L  +N      LK I+ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLSAKN------LKYISPKKEIK-PKT 251


>gi|325693537|gb|EGD35456.1| GTP-binding protein [Streptococcus sanguinis SK150]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L      
Sbjct: 158 EHCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L  +N      LK I+ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLSAKN------LKYISPKKEIK-PKT 251


>gi|325662229|ref|ZP_08150844.1| GTP-binding protein Era [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331086022|ref|ZP_08335105.1| GTP-binding protein Era [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325471481|gb|EGC74702.1| GTP-binding protein Era [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330406945|gb|EGG86450.1| GTP-binding protein Era [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 298

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   +   DT G
Sbjct: 6   RSGF-VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPG 64

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           I +  + + +  +      +   D++L L E
Sbjct: 65  IHKAKNKLGEYMVNVAERTLNEVDVVLWLVE 95


>gi|323483769|ref|ZP_08089149.1| hypothetical protein HMPREF9474_00898 [Clostridium symbiosum
           WAL-14163]
 gi|323692742|ref|ZP_08106970.1| GTP-binding protein Era [Clostridium symbiosum WAL-14673]
 gi|323402960|gb|EGA95278.1| hypothetical protein HMPREF9474_00898 [Clostridium symbiosum
           WAL-14163]
 gi|323503184|gb|EGB19018.1| GTP-binding protein Era [Clostridium symbiosum WAL-14673]
          Length = 300

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDT 274
           +++G+ + ++G  N GKS+L N L  + +AI +D P TTR+ + T+  D  G ++ + DT
Sbjct: 5   LKSGF-VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFL-DT 62

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            GI +  + + +  +      ++  D+IL L E
Sbjct: 63  PGIHKAKNKLGEYMVSVAEHTLKEVDVILWLVE 95


>gi|323156401|gb|EFZ42557.1| hypothetical protein ECEPECA14_1732 [Escherichia coli EPECa14]
          Length = 92

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           I I+G S AGKSSL NAL + +V  V+D+   TR+V    L   G+ + I+D
Sbjct: 39  IGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFRLSGHGHSMVITD 90


>gi|306821539|ref|ZP_07455139.1| GTP-binding protein Era [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550433|gb|EFM38424.1| GTP-binding protein Era [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 316

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G SN GKS+L NA+  + +AI +D P TTR  +    + E   +   DT G+++  
Sbjct: 26  VSIVGRSNVGKSTLLNAIIGEKIAITSDKPQTTRSRIKGIYNDEESQIIFLDTPGVQKPK 85

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +     K   L    AD+I+ +
Sbjct: 86  NKLGSYMAKEVSLSSSTADVIVYV 109


>gi|269792674|ref|YP_003317578.1| GTP-binding protein Era [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100309|gb|ACZ19296.1| GTP-binding protein Era [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 303

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + +LG  N GKSSL NAL  + V  V+    TTR  +   +  +GY + + DT G+ E
Sbjct: 10  VALLGRPNVGKSSLANALVGEKVMAVSPKAQTTRHAIRGIVQGDGYQIVLVDTPGVHE 67


>gi|86152718|ref|ZP_01070923.1| ferrous iron transport protein B [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85843603|gb|EAQ60813.1| ferrous iron transport protein B [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 613

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL K ++  V +  G T +  +     + Y  ++ D  G    
Sbjct: 5   KIALVGQPNVGKSLLINALCKANMK-VGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D   E+E I R FL   + D+I+
Sbjct: 64  DGYSEEEKITRHFLNQNDYDVIV 86


>gi|67922903|ref|ZP_00516400.1| Small GTP-binding protein domain [Crocosphaera watsonii WH 8501]
 gi|67855253|gb|EAM50515.1| Small GTP-binding protein domain [Crocosphaera watsonii WH 8501]
          Length = 208

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K  E+I  G  I ++G  N GKS LFN L       V++ PGTT +     + +    + 
Sbjct: 32  KSPEVISEG-TIALVGSPNVGKSLLFNVLTG-GYTTVSNYPGTTVEASRNYIKIASKTIT 89

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK 328
           I DT G+     + E+E   R  L  E  DL++    +   K +S   N+ F  + T+
Sbjct: 90  IIDTPGMYSLIPMTEEERFSRELLFREPLDLVV---HVIDAKSLSRMLNLTFQLMETQ 144


>gi|325690276|gb|EGD32280.1| GTP-binding protein [Streptococcus sanguinis SK115]
 gi|332360512|gb|EGJ38322.1| GTP-binding protein [Streptococcus sanguinis SK1056]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L      
Sbjct: 158 EHCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L  +N      LK I+ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLSAKN------LKYISPKKEIK-PKT 251


>gi|283956779|ref|ZP_06374255.1| ferrous iron transport protein B [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791754|gb|EFC30547.1| ferrous iron transport protein B [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 613

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL K ++  V +  G T +  +     + Y  ++ D  G    
Sbjct: 5   KIALVGQPNVGKSLLINALCKANMK-VGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D   E+E I R FL   + D+I+
Sbjct: 64  DGYSEEEKITRHFLNQNDYDVIV 86


>gi|225855180|ref|YP_002736692.1| GTP-binding protein YqeH [Streptococcus pneumoniae JJA]
 gi|225723024|gb|ACO18877.1| GTP-binding protein [Streptococcus pneumoniae JJA]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 45/174 (25%)

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
           SG++S    QW+ K  H       D+  +  ++      KEV++ I              
Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQNKHTI--KEVIDKI-------------- 157

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265
              E  R G    ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD  
Sbjct: 158 ---EHYRKGRDAYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            Y   I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|225027089|ref|ZP_03716281.1| hypothetical protein EUBHAL_01345 [Eubacterium hallii DSM 3353]
 gi|224955553|gb|EEG36762.1| hypothetical protein EUBHAL_01345 [Eubacterium hallii DSM 3353]
          Length = 409

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 22/175 (12%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKI 271
           GE I  G+     G  NAGKSS+ NA+  +++A+V+D  GTT D ++  ++L     V I
Sbjct: 9   GERIHIGF----FGRRNAGKSSVVNAVTGQELAVVSDTKGTTTDPVSKAMELLPLGPVMI 64

Query: 272 SDTAGIRETDDIVE------KEGIKRTFLEVENADLILLLKEINSKKEISFP-KNIDFIF 324
            DT G  +   + E      K+ + RT + V   D    +K+   +    F  K I ++ 
Sbjct: 65  IDTPGFDDKGHLGELRVRKTKQILNRTDIAVLVIDATEGIKQCEEELLAIFKEKEIPYLL 124

Query: 325 IGTKSDLYST------YTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKL 369
           +  K D+ S        TE+ + +    +S+   + + EL  K+  ++    +KL
Sbjct: 125 VYNKEDILSEEQKNLLRTEQSEQVNSICVSALEKKHINELKEKLARLVKTDNQKL 179


>gi|157415631|ref|YP_001482887.1| ferrous iron transport protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386595|gb|ABV52910.1| ferrous iron transport protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748275|gb|ADN91545.1| Ferrous iron transport protein B-like protein [Campylobacter jejuni
           subsp. jejuni M1]
          Length = 613

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL K ++  V +  G T +  +     + Y  ++ D  G    
Sbjct: 5   KIALVGQPNVGKSLLINALCKANMK-VGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D   E+E I R FL   + D+I+
Sbjct: 64  DGYSEEEKITRHFLNQNDYDVIV 86


>gi|328945658|gb|EGG39809.1| GTP-binding protein [Streptococcus sanguinis SK1087]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L      
Sbjct: 158 EHCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L  +N      LK I+ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLSAKN------LKYISPKKEIK-PKT 251


>gi|323353254|ref|ZP_08087787.1| GTP-binding protein [Streptococcus sanguinis VMC66]
 gi|322121200|gb|EFX92963.1| GTP-binding protein [Streptococcus sanguinis VMC66]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L      
Sbjct: 158 EHCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L  +N      LK I+ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLSAKN------LKYISPKKEIK-PKT 251


>gi|158336712|ref|YP_001517886.1| GTP-binding protein Era [Acaryochloris marina MBIC11017]
 gi|158306953|gb|ABW28570.1| GTP-binding protein Era-like protein [Acaryochloris marina
           MBIC11017]
          Length = 315

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 1/105 (0%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           +D+SS  S  +     ++G+ + I+G  N GKS+L N L  + +AI + +  TTR+ L  
Sbjct: 2   SDLSSLTSIPQASPEFKSGF-VAIVGRPNVGKSTLMNQLIGQKIAITSPVAQTTRNRLRG 60

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            L      +   DT GI +    + +  +K   + +   D++L +
Sbjct: 61  ILTTPTAQMIFVDTPGIHKPHHQLGEILVKNARMAIHAVDVVLFV 105


>gi|160933320|ref|ZP_02080708.1| hypothetical protein CLOLEP_02165 [Clostridium leptum DSM 753]
 gi|156867197|gb|EDO60569.1| hypothetical protein CLOLEP_02165 [Clostridium leptum DSM 753]
          Length = 305

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 28/163 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSL NA+  + VAIV+  P TTR  +T  L      +   DT G+ +  
Sbjct: 12  IAIVGRPNVGKSSLLNAMLGQKVAIVSSKPQTTRTRITGVLTQRETQLIFIDTPGLHKPR 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKSD 330
             +    ++     V   D  +L+ E  + KEI+ P +++            +    K D
Sbjct: 72  TRLGDYMVRSVTESVAGVDSCMLVAE--AGKEIA-PADLELMKKFKSLSLPAVLAINKID 128

Query: 331 LY----------STYTEEYDH----LISSFTGEGLEELINKIK 359
           L           + + E++D      +S+ TG+G+  L++++K
Sbjct: 129 LLEDKSVLIRQITKFMEQFDFDAVVPVSAQTGDGVGGLVDELK 171


>gi|114049482|ref|YP_740032.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella sp. MR-7]
 gi|119369255|sp|Q0HPI0|ENGB_SHESR RecName: Full=Probable GTP-binding protein EngB
 gi|113890924|gb|ABI44975.1| cell division checkpoint GTPase YihA [Shewanella sp. MR-7]
          Length = 219

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLD 263
           +H+ Q   G++   G +I   G SNAGKSS  NAL  +K++A  +  PG T+ +   +LD
Sbjct: 21  AHLDQYLPGDV---GVEIAFAGRSNAGKSSALNALTEQKNLARTSKTPGRTQLINVFELD 77

Query: 264 LEGYLVKI 271
            +  LV +
Sbjct: 78  AQRRLVDL 85


>gi|57168938|ref|ZP_00368067.1| ferrous iron transport protein B [Campylobacter coli RM2228]
 gi|57019604|gb|EAL56293.1| ferrous iron transport protein B [Campylobacter coli RM2228]
          Length = 613

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL K ++  V +  G T +  +     + Y  ++ D  G    
Sbjct: 5   KIALVGQPNVGKSLLINALCKANMK-VGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D   E+E I R FL   + D+I+
Sbjct: 64  DGYSEEEKITRHFLNQNDYDVIV 86


>gi|283796159|ref|ZP_06345312.1| GTP-binding protein Era [Clostridium sp. M62/1]
 gi|291076378|gb|EFE13742.1| GTP-binding protein Era [Clostridium sp. M62/1]
 gi|295092205|emb|CBK78312.1| GTP-binding protein Era [Clostridium cf. saccharolyticum K10]
          Length = 301

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + +AI +D P TTR+ + T+  D  G ++ + DT GI + 
Sbjct: 10  VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFL-DTPGIHKA 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + + +  +      ++  D+IL L E
Sbjct: 69  KNKLGEYMVSVAEHTLKEVDVILWLVE 95


>gi|324990744|gb|EGC22680.1| GTP-binding protein [Streptococcus sanguinis SK353]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L      
Sbjct: 158 EHCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L  +N      LK I+ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLSAKN------LKYISPKKEIK-PKT 251


>gi|269794669|ref|YP_003314124.1| GTP-binding protein Era [Sanguibacter keddieii DSM 10542]
 gi|269096854|gb|ACZ21290.1| GTP-binding protein Era [Sanguibacter keddieii DSM 10542]
          Length = 314

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G + R+G+   + G  NAGKS+L NAL  + VAI +D P TTR  +   ++     + + 
Sbjct: 11  GAVHRSGFACFV-GRPNAGKSTLTNALVGQKVAITSDRPQTTRHTIRGIVNRPDAQLILV 69

Query: 273 DTAGI 277
           DT G+
Sbjct: 70  DTPGL 74


>gi|228470610|ref|ZP_04055467.1| GTP-binding protein Era [Porphyromonas uenonis 60-3]
 gi|228307737|gb|EEK16713.1| GTP-binding protein Era [Porphyromonas uenonis 60-3]
          Length = 295

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 7/108 (6%)

Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           GYK   + I+G+ N GKS+L N L  + ++I+T    TTR  +   ++ +   V  SDT 
Sbjct: 4   GYKSGFVSIVGNPNVGKSTLMNYLVGERISIITSKAQTTRHRILGIVNSDRMQVVYSDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           G+ +    +++     +   +E+ADL+L + +   +++    K+ DF+
Sbjct: 64  GVLQPSYKLQERMRAYSEQALEDADLLLYVTDTMEERD----KHHDFV 107


>gi|188996011|ref|YP_001930262.1| GTP-binding protein HSR1-related [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931078|gb|ACD65708.1| GTP-binding protein HSR1-related [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 260

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           KI +LG+ N GKSS+ N L +K VA  +  PG T     + LD   +L+   DT GI
Sbjct: 110 KIGVLGYPNVGKSSVINTLKRKKVATTSPKPGMTVGEKLVKLDENIFLI---DTPGI 163


>gi|146340795|ref|YP_001205843.1| putative GTP-binding protein (hflX) [Bradyrhizobium sp. ORS278]
 gi|146193601|emb|CAL77618.1| putative GTP-binding protein (hflX) [Bradyrhizobium sp. ORS278]
          Length = 459

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 31/187 (16%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y++V L G++NAGKS+LFN L + DV    D+   T D     + L  G    +SDT
Sbjct: 222 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRAISLPHGGKAMLSDT 280

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLY 332
            G             + T  EV  AD+IL +++++ +   +   +++ +   +G   +  
Sbjct: 281 VGFISNLPTQLVAAFRATLEEVLEADVILHVRDMSHEDAEAQQHDVELVLSQLGIDPEAT 340

Query: 333 STYTEEYDH--------------------------LISSFTGEGLEELINKIKSILSNKF 366
            T  E ++                           ++S+ TGEG++ L+  I+  L+   
Sbjct: 341 DTIIEVWNKIDRLDDAARENLANIAARRPPERPCFMVSAETGEGVDALLQAIEDRLAAAR 400

Query: 367 KKLPFSI 373
             L  +I
Sbjct: 401 TTLDLTI 407


>gi|322386055|ref|ZP_08059694.1| GTP-binding protein [Streptococcus cristatus ATCC 51100]
 gi|321269899|gb|EFX52820.1| GTP-binding protein [Streptococcus cristatus ATCC 51100]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KDV   +  PGTT D + I L      
Sbjct: 158 EHCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L  +N      LK ++ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLSAKN------LKYVSPKKEIK-PKT 251


>gi|283458064|ref|YP_003362675.1| GTPase [Rothia mucilaginosa DY-18]
 gi|283134090|dbj|BAI64855.1| GTPase [Rothia mucilaginosa DY-18]
          Length = 391

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+  ++ G  NAGKS+L NA+  + VAI ++ P TTR  +   +  + Y + + DT G
Sbjct: 33  RSGFASLV-GRPNAGKSTLTNAMVGQKVAITSNRPQTTRHTIRGIVHKDEYQLILVDTPG 91

Query: 277 I 277
           I
Sbjct: 92  I 92


>gi|254509743|ref|ZP_05121810.1| GTP-binding proten HflX [Rhodobacteraceae bacterium KLH11]
 gi|221533454|gb|EEE36442.1| GTP-binding proten HflX [Rhodobacteraceae bacterium KLH11]
          Length = 423

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 26/169 (15%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGI 277
           Y IV L G++NAGKS+LFN+L   +V +  D+   T D     ++L+ G  V +SDT G 
Sbjct: 202 YPIVALVGYTNAGKSTLFNSLTGAEV-MAKDMLFATLDPTMRRVELQDGPEVILSDTVGF 260

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF------------- 324
                       + T  EV  ADL++ +++I+ +   +  ++++ I              
Sbjct: 261 ISNLPTELVAAFRATLEEVLGADLVVHVRDISHEDSEAQAQDVETILASLGVDDDRPRLE 320

Query: 325 IGTKSDLYSTYTEEYD----------HLISSFTGEGLEELINKIKSILS 363
           +  K DL      E              IS+ TGEG+  L+ +I + L 
Sbjct: 321 VWNKIDLLGAEAREATLARAERDPQVFAISAVTGEGVAPLLTEIATKLQ 369


>gi|205356161|ref|ZP_03222928.1| ferrous iron transport protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346004|gb|EDZ32640.1| ferrous iron transport protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 613

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL K ++  V +  G T +  +     + Y  ++ D  G    
Sbjct: 5   KIALVGQPNVGKSLLINALCKANMK-VGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D   E+E I R FL   + D+I+
Sbjct: 64  DGYSEEEKITRHFLNQNDYDVIV 86


>gi|46580074|ref|YP_010882.1| ribosome biogenesis GTP-binding protein YsxC [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|81566751|sp|Q72BH2|ENGB_DESVH RecName: Full=Probable GTP-binding protein EngB
 gi|46449490|gb|AAS96141.1| GTP-binding protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233927|gb|ADP86781.1| ribosome biogenesis GTP-binding protein YsxC [Desulfovibrio
           vulgaris RCH1]
          Length = 216

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +I + G SN GKSSL NALA +K +A  +  PG TR V    ++ EG+ +
Sbjct: 24  QIALAGRSNVGKSSLVNALARRKQLAKTSSTPGKTRSVNYYRVEPEGFYI 73


>gi|309811062|ref|ZP_07704860.1| ribosome biogenesis GTPase Era [Dermacoccus sp. Ellin185]
 gi|308435026|gb|EFP58860.1| ribosome biogenesis GTPase Era [Dermacoccus sp. Ellin185]
          Length = 314

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           GEI R G+  ++ G  NAGKS+L NAL    VAI +  P TTR
Sbjct: 10  GEIYRAGFACLV-GRPNAGKSTLTNALVGDKVAITSSKPQTTR 51


>gi|307300896|ref|ZP_07580665.1| GTP-binding protein Era [Sinorhizobium meliloti BL225C]
 gi|307320713|ref|ZP_07600125.1| GTP-binding protein Era [Sinorhizobium meliloti AK83]
 gi|306893640|gb|EFN24414.1| GTP-binding protein Era [Sinorhizobium meliloti AK83]
 gi|306903851|gb|EFN34437.1| GTP-binding protein Era [Sinorhizobium meliloti BL225C]
          Length = 309

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 84/182 (46%), Gaps = 32/182 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275
           R+G+ + ++G +NAGKS+L N L    V+IV+    TTR ++  I +     +V   DT 
Sbjct: 16  RSGF-VALIGATNAGKSTLVNRLVGAKVSIVSHKVQTTRAIIRGIAIHGSAQIV-FMDTP 73

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNI--- 320
           GI +    +++  +   +   ++ADLI+LL +            +   KE+  PK +   
Sbjct: 74  GIFKPRRRLDRAMVTTAWGGAKDADLIMLLIDSERGIKGDAEAILEGLKEVHQPKVLVLN 133

Query: 321 --------DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   D + +   ++    +  E   +IS+ TG G E++++     L+    + P+ 
Sbjct: 134 KVDQVRREDLLKLAAAANDVVAF--ERTFMISALTGSGCEDVMD----YLAETLPEGPWY 187

Query: 373 IP 374
            P
Sbjct: 188 YP 189


>gi|225848880|ref|YP_002729044.1| ferrous iron transporter B [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643217|gb|ACN98267.1| ferrous iron transport protein B [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 711

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G+ N GKS+L NA++  D+  V + PG T + L        Y ++  D  G+    
Sbjct: 6   VALVGNPNVGKSALLNAISGSDIK-VGNWPGVTVEKLEATFIYNDYKIRFIDLPGVYSLR 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           +   +E I   FL  E  D+IL
Sbjct: 65  NQTAEEKITIEFLLKERPDVIL 86


>gi|219124036|ref|XP_002182319.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406280|gb|EEC46220.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 306

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L NAL ++D+ I T  P TTR  +   +  +   V + DT G+ E     
Sbjct: 1   MGAPNMGKSTLLNALLEEDLCIATARPQTTRHAILGLMSTDKCQVCLVDTPGVIEDPAYE 60

Query: 285 EKEGIKRTFL-EVENADLILLLKEINS 310
            +EG+       V  +D++L++ ++ S
Sbjct: 61  LQEGMMEAVTGAVATSDVLLVVTDVFS 87


>gi|121613472|ref|YP_001001052.1| ferrous iron transport protein B, authentic frameshift
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005954|ref|ZP_02271712.1| ferrous iron transport protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87249901|gb|EAQ72860.1| ferrous iron transport protein B, authentic frameshift
           [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 252

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL K ++  V +  G T +  +     + Y  ++ D  G    
Sbjct: 5   KIALVGQPNVGKSLLINALCKANMK-VGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D   E+E I R FL   + D+I+
Sbjct: 64  DGYSEEEKITRHFLNQNDYDVIV 86


>gi|270292736|ref|ZP_06198947.1| GTP-binding protein [Streptococcus sp. M143]
 gi|270278715|gb|EFA24561.1| GTP-binding protein [Streptococcus sp. M143]
          Length = 283

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A++ + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVIGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176


>gi|328543512|ref|YP_004303621.1| GTP-binding protein Era [polymorphum gilvum SL003B-26A1]
 gi|326413256|gb|ADZ70319.1| GTP-binding protein Era [Polymorphum gilvum SL003B-26A1]
          Length = 318

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 5/100 (5%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275
           R G+ I ++G  NAGKS+L N L    V+IVT    TTR ++  I +     LV + DT 
Sbjct: 25  RAGF-IALIGAPNAGKSTLLNQLVGTKVSIVTHKVQTTRAIVRGIAMHGSAQLVFV-DTP 82

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           GI +    +++  +   +    +AD+I LL  I+++K +S
Sbjct: 83  GIFQPKRRLDRAMVDTAWGGARDADVIALL--IDARKGLS 120


>gi|319744986|gb|EFV97314.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           agalactiae ATCC 13813]
          Length = 283

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG-----YKIVILGHSNAG 231
           DF E + ++  +       I+    DI+  +   K+ ++   G      + +I+G  NAG
Sbjct: 74  DFYESQGLKTLAINSKEQSIVKKVTDIAKILMSDKIAKLRGRGIQKETLRTMIIGIPNAG 133

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           KS+L N LA K +A+V + PG T+    +  + E   ++I DT GI
Sbjct: 134 KSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKE---LEILDTPGI 176


>gi|291542666|emb|CBL15776.1| Ras superfamily GTP-binding protein YlqF [Ruminococcus bromii
           L2-63]
          Length = 290

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 8/80 (10%)

Query: 201 NDISSH-ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DV 257
           N + SH I++ K   ++    +I+I+G  N GKSS  N + KK+ A V D PG TR    
Sbjct: 105 NTVMSHKIARLKEKGMVNPTIRIMIVGIPNVGKSSFINKMVKKNRAKVEDRPGVTRGNQW 164

Query: 258 LTIDLDLEGYLVKISDTAGI 277
            TI  +LE     + DT G+
Sbjct: 165 YTIAKNLE-----MLDTPGV 179


>gi|292489619|ref|YP_003532509.1| GTP-binding protein hflX [Erwinia amylovora CFBP1430]
 gi|292898161|ref|YP_003537530.1| GTP-binding protein [Erwinia amylovora ATCC 49946]
 gi|291198009|emb|CBJ45111.1| GTP-binding protein [Erwinia amylovora ATCC 49946]
 gi|291555056|emb|CBA23139.1| GTP-binding protein hflX [Erwinia amylovora CFBP1430]
          Length = 426

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 39/257 (15%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +S    QG+      +   + ++G++NAGKS+LFN L   +V     +  T    L  +D
Sbjct: 181 VSKQREQGRQARNKADVPTVSLVGYTNAGKSTLFNRLTSAEVYAADQLFATLDPTLRRVD 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
           +   G +V ++DT G IR    D+V     K T  E   A L+L    I    ++   +N
Sbjct: 241 VADVGEVV-LADTVGFIRHLPHDLV--AAFKATLQETREAALLL---HIVDAADLRIEEN 294

Query: 320 IDFI---------------FIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELI 355
           ID +                +  K D+   +    D           +S+ TGEG+  L 
Sbjct: 295 IDAVNVVLEEIESDDIPSLLVMNKIDMLDGFVPRIDRDEENLPVRVWLSAQTGEGIPLLF 354

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
             +   L+ +  +    +P     L      +R +E    NE+D  L +    +R+  V 
Sbjct: 355 QALTERLAGEIAQFELRLPPAAGRLRSRFYQLRAIE-KEWNEEDGSLGL---QIRMPIVD 410

Query: 416 LGKITGCVDVEQLLDII 432
             ++  C    +L+D I
Sbjct: 411 WRRL--CKQEPELVDYI 425


>gi|255525914|ref|ZP_05392841.1| small GTP-binding protein [Clostridium carboxidivorans P7]
 gi|255510408|gb|EET86721.1| small GTP-binding protein [Clostridium carboxidivorans P7]
          Length = 411

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N   I + G  NAGKSS+ NAL  +++A+V+++ GTT D +   +++   G +V I DTA
Sbjct: 11  NRLHIALFGKRNAGKSSIINALTGQEIALVSEVKGTTTDPVYKAMEILPIGPVVLI-DTA 69

Query: 276 GI 277
           G+
Sbjct: 70  GL 71


>gi|325479102|gb|EGC82202.1| hydrogenase maturation GTPase HydF [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 382

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G +N+GKS+L N +   D AIV++I GTT D +   +++  +  V   DTAG+ + 
Sbjct: 11  IGIFGKTNSGKSTLLNYMTGTDTAIVSNIKGTTTDPIKKAMEITDFGPVLFIDTAGVGDD 70

Query: 281 DDI 283
            D+
Sbjct: 71  TDL 73


>gi|322492339|emb|CBZ27613.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 529

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           +  LG  NAGK+SL N+LA  +V  V++  G+T+D       +    + + DT GI  R+
Sbjct: 241 VAFLGPQNAGKTSLVNSLALSNVGAVSNRYGSTKDWTKAVATVHDTQLLLLDTPGIVPRD 300

Query: 280 TDDIVEK--EGIKRTFLEVENADLILL 304
           T  +  K   G  + +  +  ADL++L
Sbjct: 301 TQRVRRKFASGTAKAYDALFVADLVVL 327


>gi|322373052|ref|ZP_08047588.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
           C150]
 gi|321278094|gb|EFX55163.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
           C150]
          Length = 284

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|306829801|ref|ZP_07462988.1| GTP-binding protein HflX [Streptococcus mitis ATCC 6249]
 gi|304427812|gb|EFM30905.1| GTP-binding protein HflX [Streptococcus mitis ATCC 6249]
          Length = 412

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNTLTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIVKDLDMEDIPRLTLY 317

Query: 327 TKSDLYSTY--TEEYDHLISSFTGEGLEE----LINKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL   +  T+    LIS+ + +  E+    L++KIK I  +   +LPFS  S+K H
Sbjct: 318 NKADLVEDFMPTQTPYALISAKSKDSREQLQALLLDKIKEIFESFTLRLPFS-KSYKIH 375


>gi|288801361|ref|ZP_06406815.1| GTP-binding protein Era [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331744|gb|EFC70228.1| GTP-binding protein Era [Prevotella sp. oral taxon 299 str. F0039]
          Length = 293

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 80/161 (49%), Gaps = 20/161 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ E   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNLLVGEKISIATFKAQTTRHRIMGIVNTEDMQIVFSDTPGVLKPNYR 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPK-----NIDFIFIGTKSDLYSTYT 336
           +++  +  +   + +AD++L + ++  N +K I F +     +I  I +  K D+    T
Sbjct: 69  LQESMLAFSESALTDADILLYVTDVIENPEKNIEFLEKVQHLDIPIILLINKIDMSDQKT 128

Query: 337 -----EEYDHL--------ISSFTGEGLEELINKIKSILSN 364
                E++  L        +S+    G++ L+N+IK +L +
Sbjct: 129 LGSLVEKWHSLLPKAEILPLSALNKFGVDILLNRIKDLLPD 169


>gi|282908792|ref|ZP_06316610.1| GTP-binding protein [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282327056|gb|EFB57351.1| GTP-binding protein [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 59

 Score = 41.6 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + I+G  N GKS++FN +  + V+IV D PG TRD
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRD 40


>gi|228476732|ref|ZP_04061398.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           salivarius SK126]
 gi|228251603|gb|EEK10704.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           salivarius SK126]
          Length = 284

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 7/65 (10%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKIS 272
           I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I 
Sbjct: 117 IQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----IL 171

Query: 273 DTAGI 277
           DT GI
Sbjct: 172 DTPGI 176


>gi|225455575|ref|XP_002268933.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 737

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++ I+G  N GKS+L N L +++  +V    G TRD +      +G  V + DTAG
Sbjct: 337 QLAIVGRPNVGKSTLLNTLLQENRVLVGPEAGLTRDSVRAQFQFQGRTVYLVDTAG 392


>gi|217967705|ref|YP_002353211.1| GTP-binding protein Era [Dictyoglomus turgidum DSM 6724]
 gi|217336804|gb|ACK42597.1| GTP-binding protein Era [Dictyoglomus turgidum DSM 6724]
          Length = 298

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKS+L N L  + V+IV D P TTR  +   L LE       DT G     
Sbjct: 10  ISIVGKPNAGKSTLINLLVGEKVSIVADKPQTTRQRILGVLTLEDAQFIFLDTPGWFPPK 69

Query: 282 DIV---EKEGIKRTFLEVENADLIL 303
            ++    ++ IK+T   +E++D++L
Sbjct: 70  HLLGEYMQKTIKKT---IEDSDIVL 91


>gi|254411028|ref|ZP_05024806.1| GTP-binding protein Era [Microcoleus chthonoplastes PCC 7420]
 gi|196182383|gb|EDX77369.1| GTP-binding protein Era [Microcoleus chthonoplastes PCC 7420]
          Length = 318

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKS+L N L  + +AI + +  TTR+ L   L  +   +   DT GI +    
Sbjct: 32  IIGRPNVGKSTLMNELVGQKIAITSPVAQTTRNRLQGILTTDNAQLIFVDTPGIHKPHHQ 91

Query: 284 VEKEGIKRTFLEVENADLILLL 305
           + K  ++   + +E  D++L +
Sbjct: 92  LGKVLVQNAKIAIEAVDVVLFV 113


>gi|99081196|ref|YP_613350.1| GTP-binding protein, HSR1-related [Ruegeria sp. TM1040]
 gi|99037476|gb|ABF64088.1| GTP-binding protein HSR1-related [Ruegeria sp. TM1040]
          Length = 423

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 36/214 (16%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y IV L G++NAGKS+LFN L   +V +  D+   T D     ++L +G  V +SDT G 
Sbjct: 202 YPIVALVGYTNAGKSTLFNRLTGAEV-MAKDMLFATLDPTMRRVELPDGPEVILSDTVGF 260

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
                       + T  EV  AD+IL +++I+        ++++ I      D   T  E
Sbjct: 261 ISDLPTELVASFRATLEEVLAADVILHVRDISHSDTEHQAEDVEQILSSLGVDEDRTVIE 320

Query: 338 EYDHL-----------------------ISSFTGEGLEELIN----KIKSILSNKFKKLP 370
            ++ +                       IS+ TGEGL +L++    K++ +  ++   L 
Sbjct: 321 VWNKIDQLSEEEADACRQRADRNDSLYAISAITGEGLPQLLHDIAMKLQGVRVDEVLTLD 380

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           FS    K+  +   Q V   E    N+ D G +I
Sbjct: 381 FS--QGKQRAWLFKQDVVQEE----NQTDTGFEI 408


>gi|323141988|ref|ZP_08076839.1| ribosome biogenesis GTPase Era [Phascolarctobacterium sp. YIT
           12067]
 gi|322413520|gb|EFY04388.1| ribosome biogenesis GTPase Era [Phascolarctobacterium sp. YIT
           12067]
          Length = 287

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 48/89 (53%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKS+L N+L  + +AI++D P TTR+ +   ++ +   +   DT GI +    
Sbjct: 1   MVGRPNVGKSTLTNSLIGEKIAIMSDRPQTTRNKIMCIMNTDNAQIMFLDTPGIHKPQHK 60

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKK 312
           + +  ++     ++  D++L + +   K+
Sbjct: 61  LGEYMVRTAESTLQEVDVVLFVVDATEKR 89


>gi|312173797|emb|CBX82051.1| GTP-binding protein hflX [Erwinia amylovora ATCC BAA-2158]
          Length = 426

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 39/257 (15%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +S    QG+      +   + ++G++NAGKS+LFN L   +V     +  T    L  +D
Sbjct: 181 VSKQREQGRQARNKADVPTVSLVGYTNAGKSTLFNRLTSAEVYAADQLFATLDPTLRRVD 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
           +   G +V ++DT G IR    D+V     K T  E   A L+L    I    ++   +N
Sbjct: 241 VADVGEVV-LADTVGFIRHLPHDLV--AAFKATLQETREAALLL---HIVDAADLRIEEN 294

Query: 320 IDFI---------------FIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELI 355
           ID +                +  K D+   +    D           +S+ TGEG+  L 
Sbjct: 295 IDAVNVVLKEIESDDIPSLLVMNKIDMLDGFVPRIDRDEENLPVRVWLSAQTGEGIPLLF 354

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
             +   L+ +  +    +P     L      +R +E    NE+D  L +    +R+  V 
Sbjct: 355 QALTERLAGEIAQFELRLPPAAGRLRSRFYQLRAIE-KEWNEEDGSLGL---QIRMPIVD 410

Query: 416 LGKITGCVDVEQLLDII 432
             ++  C    +L+D I
Sbjct: 411 WRRL--CKQEPELVDYI 425


>gi|309775503|ref|ZP_07670503.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916597|gb|EFP62337.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 173

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  +  +IV D PG TRD +    +      ++ DT GI+  +
Sbjct: 6   VAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTREFRVIDTGGIQLAN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              + E   +  + ++ AD I+ +
Sbjct: 66  QDFQTEINMQVEIAIDEADCIVFV 89


>gi|320106882|ref|YP_004182472.1| ribosome biogenesis GTP-binding protein YsxC [Terriglobus saanensis
           SP1PR4]
 gi|319925403|gb|ADV82478.1| ribosome biogenesis GTP-binding protein YsxC [Terriglobus saanensis
           SP1PR4]
          Length = 204

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 69/165 (41%), Gaps = 39/165 (23%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-------------DL 264
           N  ++  LG SN GKSSL NAL     A V+  PG TR +    L             DL
Sbjct: 25  NAPEVAFLGRSNVGKSSLINALLGGTQARVSSTPGRTRSINFFGLYDDPRPQPEVIFADL 84

Query: 265 EGY-LVKISDTAGIRETDDIVEKEGIKRTFL-EVENADLILLLKE------------INS 310
            GY   KIS +          E  G    +L + E   L + L +            IN 
Sbjct: 85  PGYGYAKISKSIS-------AEWSGFIDPYLADRETLALCICLVDTNIPPQPPDTQLINY 137

Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            +EI  P    F+ +GTKSD  S  T   + +++   G G++E++
Sbjct: 138 LREIRRP----FLVVGTKSDKLSNNTLG-NSVLALKKGHGVDEVM 177


>gi|307718259|ref|YP_003873791.1| GTP-binding protein [Spirochaeta thermophila DSM 6192]
 gi|306531984|gb|ADN01518.1| GTP-binding protein [Spirochaeta thermophila DSM 6192]
          Length = 290

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 24/153 (15%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRETD- 281
           I+G  ++GKS+L N L  + VAI + +P TTR+ +  I  +  G +V I DT G  +++ 
Sbjct: 8   IVGRPSSGKSTLLNTLCGRKVAITSPVPQTTRNRIRGIVTEERGQIVFI-DTPGYHQSEK 66

Query: 282 --DIVEKEGIKRTFLEV---------------ENADLILLLKEINSKKEISFPKNIDFI- 323
             ++  KE +     EV               E  +LI L+K+      I+  K ID   
Sbjct: 67  KFNLFLKEQVIEALKEVDEILYLVDSTRSIGEEEHELIELVKQAGKPVVIALNK-IDIPE 125

Query: 324 --FIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
               G    L + +       IS++TGEGLE+L
Sbjct: 126 HHAEGMVPLLKAHFPSAPIVKISAYTGEGLEDL 158


>gi|299535811|ref|ZP_07049132.1| GTP-binding protein Era-like protein [Lysinibacillus fusiformis
           ZC1]
 gi|298729011|gb|EFI69565.1| GTP-binding protein Era-like protein [Lysinibacillus fusiformis
           ZC1]
          Length = 305

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 7/52 (13%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID 261
           +NGYK   I I+G  N GKS+  N +  + +AI++D P TTR+    VLT D
Sbjct: 5   KNGYKSGFISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTD 56


>gi|188996832|ref|YP_001931083.1| ferrous iron transport protein B [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931899|gb|ACD66529.1| ferrous iron transport protein B [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 708

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GK++L N +A  D+  V + PG T +     +  + Y+++  D  GI   
Sbjct: 6   KVALIGNPNVGKTALLNEIAGTDLK-VGNWPGVTIEKKEATITYKDYIIRFVDLPGIYSL 64

Query: 281 DDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEI 314
            +   +E I   +L  E  D+IL +L   N K+ +
Sbjct: 65  RNQTAEEKITVDYLLNEKPDVILNILDSTNLKRNL 99


>gi|328543916|ref|YP_004304025.1| GTP binding protein-like protein [polymorphum gilvum SL003B-26A1]
 gi|326413660|gb|ADZ70723.1| GTP binding protein-like protein [Polymorphum gilvum SL003B-26A1]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 26/178 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG---- 276
           + ++G++NAGKS+LFN L +  V +  D+   T D     + L  G  V +SDT G    
Sbjct: 232 VALVGYTNAGKSTLFNRLTEAQV-LAKDLLFATLDPTLRRIKLPHGREVILSDTVGFISE 290

Query: 277 ---------------IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP---- 317
                          + E D I+    I     + + AD+   L+++        P    
Sbjct: 291 LPTHLVAAFRATLEEVLEADLILHVRDIAHPDTDAQAADVARTLEDLGVGPTTGAPIVEV 350

Query: 318 -KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              ID +    ++ L +  T+     +S+ TGEG+  L+ +I++ ++        ++P
Sbjct: 351 WNKIDCLDAERRARLLAGQTDSGPVALSALTGEGIGALLARIEAFMAQGDDTFELALP 408


>gi|303246793|ref|ZP_07333070.1| GTP-binding protein Era [Desulfovibrio fructosovorans JJ]
 gi|302491810|gb|EFL51690.1| GTP-binding protein Era [Desulfovibrio fructosovorans JJ]
          Length = 305

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +V+LG +NAGKS+L N +  + V+IV+  P TTR+ ++  L          DT G+    
Sbjct: 10  VVMLGPTNAGKSTLLNRVIGQKVSIVSPKPQTTRNSISGILTEGDAQAVFLDTPGLHRQK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +    ++  +  +  AD++L+L
Sbjct: 70  RGIAPLLLRSAYAALGQADVVLVL 93


>gi|294501323|ref|YP_003565023.1| GTP-binding protein [Bacillus megaterium QM B1551]
 gi|294351260|gb|ADE71589.1| GTP-binding protein [Bacillus megaterium QM B1551]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+  NA+ K     KD+   +  PGTT D++ I LD    L
Sbjct: 156 EHYREGKDVYVVGCTNVGKSTFINAIIKEVTGEKDIITTSQYPGTTLDMIDIPLDNGASL 215

Query: 269 VKISDTAGI 277
               DT GI
Sbjct: 216 Y---DTPGI 221


>gi|167949211|ref|ZP_02536285.1| tRNA modification GTPase TrmE [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 90

 Score = 41.6 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
           + +RHL  L +    LE  +   K     +I+AE LR A  +L +ITG    + LL  IF
Sbjct: 24  ARRRHLDALQRAATALERGNQQFKQFTAGEILAEELRQAQQALNEITGEFCADDLLGRIF 83

Query: 434 SKFCIGK 440
           S FCIGK
Sbjct: 84  SSFCIGK 90


>gi|332523230|ref|ZP_08399482.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314494|gb|EGJ27479.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 287

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTI 260
           ++  I++ +   I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    L  
Sbjct: 105 MTDKIAKLRQRGIQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKS 164

Query: 261 DLDLEGYLVKISDTAGI 277
           + DLE     I DT GI
Sbjct: 165 NKDLE-----ILDTPGI 176


>gi|319776923|ref|YP_004136574.1| gtp-binding protein engb [Mycoplasma fermentans M64]
 gi|318037998|gb|ADV34197.1| Probable GTP-binding protein engB [Mycoplasma fermentans M64]
          Length = 194

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 9/60 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR---------DVLTIDLDLEGY 267
           +N +++   G SN GKSSL NA+  ++++ V+  PG T+         D   +DL   GY
Sbjct: 18  KNSFQVCFWGRSNVGKSSLLNAITNQNISFVSKHPGRTQLINYFADNNDKYIVDLHGYGY 77


>gi|309775711|ref|ZP_07670709.1| ribosome biogenesis GTPase YqeH [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916550|gb|EFP62292.1| ribosome biogenesis GTPase YqeH [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 359

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +V++G +NAGKS+L NA+        +  PGTT D  +I   +EGY  ++ DT G
Sbjct: 159 RRERDVVVMGMANAGKSTLLNAICDHTDLTTSRHPGTTLDFNSI--AMEGY--QLYDTPG 214

Query: 277 IRETDDIV 284
           +   D ++
Sbjct: 215 LTRMDSLL 222


>gi|296393922|ref|YP_003658806.1| GTP-binding protein Era [Segniliparus rotundus DSM 44985]
 gi|296181069|gb|ADG97975.1| GTP-binding protein Era [Segniliparus rotundus DSM 44985]
          Length = 321

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +   G  N GKSSL NAL  ++V I +  P TTR  +   ++   + + I DT G
Sbjct: 30  RSGF-VCFAGRPNVGKSSLINALVGEEVMITSAHPQTTRRAVRAIMNAPDHQIVIVDTPG 88

Query: 277 I 277
           +
Sbjct: 89  V 89


>gi|195978787|ref|YP_002124031.1| GTP-binding protein YqeH [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975492|gb|ACG63018.1| GTPase [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 372

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 22/182 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +R    + ++G +N GKS+L NA+ +     KDV   +  PGTT D + I LD   +   
Sbjct: 160 LRQRRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSF--- 216

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
           I DT GI     +         +L  +N   I   KEI  K     PK   F+    + D
Sbjct: 217 IFDTPGIIHRHQMAH-------YLSAKNLKFISPKKEIKPKTYQLNPKQTLFLGGLARFD 269

Query: 331 LYS----TYTEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHL 383
             S     +T  +D+  L+     EG +   +K   +L     K      P   RH + L
Sbjct: 270 FISGERQGFTAYFDNQLLLHRTKLEGADAFYDKQAGLLLTPPDKQELDDFPRLVRHEFLL 329

Query: 384 SQ 385
            Q
Sbjct: 330 DQ 331


>gi|167769533|ref|ZP_02441586.1| hypothetical protein ANACOL_00867 [Anaerotruncus colihominis DSM
           17241]
 gi|167668501|gb|EDS12631.1| hypothetical protein ANACOL_00867 [Anaerotruncus colihominis DSM
           17241]
          Length = 396

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  N+GKSSL NA+  ++ A+ +DI GTT D +   +++ G     + DTAG
Sbjct: 10  NRLHIGIFGKRNSGKSSLINAITGQNTAVTSDIAGTTTDPVYKAMEIHGIGPCMLIDTAG 69


>gi|298207488|ref|YP_003715667.1| GTP-binding protein HflX [Croceibacter atlanticus HTCC2559]
 gi|83850124|gb|EAP87992.1| GTP-binding protein HflX [Croceibacter atlanticus HTCC2559]
          Length = 407

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 18/127 (14%)

Query: 192 VLNDILFLKNDISS-----HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-- 244
           V + I  LKN I        + +G  G+++R    + ++G++N GKS+L NA++K +V  
Sbjct: 171 VRDKISLLKNKIKKIDKQMEVQRGNRGQLVR----VALVGYTNVGKSTLMNAISKSEVFA 226

Query: 245 --AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T R V+  +L        ++DT G          E  K T  EV  ADL+
Sbjct: 227 ENKLFATLDTTVRKVVIRNLPF-----LLTDTVGFIRKLPTQLVESFKSTLDEVREADLL 281

Query: 303 LLLKEIN 309
           L + +I+
Sbjct: 282 LHVVDIS 288


>gi|113972233|ref|YP_736026.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella sp. MR-4]
 gi|117922541|ref|YP_871733.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella sp. ANA-3]
 gi|119369254|sp|Q0HD98|ENGB_SHESM RecName: Full=Probable GTP-binding protein EngB
 gi|166225983|sp|A0L2Q8|ENGB_SHESA RecName: Full=Probable GTP-binding protein EngB
 gi|113886917|gb|ABI40969.1| cell division checkpoint GTPase YihA [Shewanella sp. MR-4]
 gi|117614873|gb|ABK50327.1| cell division checkpoint GTPase YihA [Shewanella sp. ANA-3]
          Length = 219

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLD 263
           +H+ Q   G++   G +I   G SNAGKSS  NAL  +K++A  +  PG T+ +   +LD
Sbjct: 21  AHLDQYLPGDV---GVEIAFAGRSNAGKSSALNALTEQKNLARTSKTPGRTQLINVFELD 77

Query: 264 LEGYLVKI 271
            +  LV +
Sbjct: 78  AQRRLVDL 85


>gi|260589154|ref|ZP_05855067.1| ribosome biogenesis GTP-binding protein YsxC [Blautia hansenii DSM
           20583]
 gi|331082570|ref|ZP_08331695.1| GTP-binding protein engB [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260540574|gb|EEX21143.1| ribosome biogenesis GTP-binding protein YsxC [Blautia hansenii DSM
           20583]
 gi|330400548|gb|EGG80178.1| GTP-binding protein engB [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 201

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 11/120 (9%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           I   G SN GKSSL NAL  +K +A  +  PG T+ +   +++ E YLV +      + +
Sbjct: 26  IAFAGKSNVGKSSLINALMNRKSLARTSASPGKTQTINFYNVNHEMYLVDLPGYGYAKVS 85

Query: 281 DDIVEKEG--IKRTFLEVENADLILLLKEINSKKEISFPKNIDF--------IFIGTKSD 330
             + E+ G  I+R   + +    + LL +I  K   +     D+        I I TKSD
Sbjct: 86  QSVKEQWGKLIERYLHKSKQLKAVFLLIDIRHKPSENDKTMYDWIVYNGYQPIIIATKSD 145


>gi|260589683|ref|ZP_05855596.1| GTP-binding protein Era [Blautia hansenii DSM 20583]
 gi|331083115|ref|ZP_08332232.1| GTP-binding protein Era [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260539923|gb|EEX20492.1| GTP-binding protein Era [Blautia hansenii DSM 20583]
 gi|330405117|gb|EGG84654.1| GTP-binding protein Era [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 301

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 8/93 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + +AI +  P TTR+ + T+    +G +V + DT GI + 
Sbjct: 10  VAIIGRPNVGKSTLMNHLIGQKIAITSRKPQTTRNKIQTVYTGEKGQIVFL-DTPGIHKA 68

Query: 281 DDIVEKEGI---KRTFLEVENADLILLLKEINS 310
            + + +  +   +RTF   ++AD+IL L E  S
Sbjct: 69  KNKLGEYMVNVAQRTF---KDADVILWLVEPTS 98


>gi|15964826|ref|NP_385179.1| GTP-binding protein Era [Sinorhizobium meliloti 1021]
 gi|21263594|sp|Q92R46|ERA_RHIME RecName: Full=GTPase Era
 gi|15074005|emb|CAC45652.1| Probable GTP-binding protein [Sinorhizobium meliloti 1021]
          Length = 313

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 84/182 (46%), Gaps = 32/182 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275
           R+G+ + ++G +NAGKS+L N L    V+IV+    TTR ++  I +     +V   DT 
Sbjct: 20  RSGF-VALIGATNAGKSTLVNRLVGAKVSIVSHKVQTTRAIIRGIAIHGSAQIV-FMDTP 77

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNI--- 320
           GI +    +++  +   +   ++ADLI+LL +            +   KE+  PK +   
Sbjct: 78  GIFKPRRRLDRAMVTTAWGGAKDADLIMLLIDSERGIKGDAEAILEGLKEVHQPKVLVLN 137

Query: 321 --------DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   D + +   ++    +  E   +IS+ TG G E++++     L+    + P+ 
Sbjct: 138 KVDQVRREDLLKLAAAANDVVAF--ERTFMISALTGSGCEDVMD----YLAETLPEGPWY 191

Query: 373 IP 374
            P
Sbjct: 192 YP 193


>gi|125973582|ref|YP_001037492.1| GTP-binding protein Era [Clostridium thermocellum ATCC 27405]
 gi|256003401|ref|ZP_05428392.1| GTP-binding protein Era [Clostridium thermocellum DSM 2360]
 gi|281417787|ref|ZP_06248807.1| GTP-binding protein Era [Clostridium thermocellum JW20]
 gi|125713807|gb|ABN52299.1| GTP-binding protein Era [Clostridium thermocellum ATCC 27405]
 gi|255992691|gb|EEU02782.1| GTP-binding protein Era [Clostridium thermocellum DSM 2360]
 gi|281409189|gb|EFB39447.1| GTP-binding protein Era [Clostridium thermocellum JW20]
 gi|316940176|gb|ADU74210.1| GTP-binding protein Era [Clostridium thermocellum DSM 1313]
          Length = 297

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 23/176 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + I+G  N GKS+L N    + +AI++D P TTR+ +      E Y +   DT G
Sbjct: 4   KSGF-VSIVGRPNVGKSTLLNKFTGEKIAIMSDKPQTTRNTIRAIDTGEDYQIIYIDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFP-----K 318
           I +    +    +      +   DL+L L E             I   K +  P      
Sbjct: 63  IHKPKTKLGDFMVNIALDSLNEVDLVLFLVEATCPQPGPGDLYIIEQLKNLKTPVFCLIN 122

Query: 319 NIDFIFIGTKSDLYSTY--TEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLP 370
            ID +       + + Y  T E+  +  IS+   E +E + N+IK +L    K  P
Sbjct: 123 KIDLVEKEQILPIIAAYKDTMEFSQIIPISALEYESVEVVKNEIKKVLPEGPKYFP 178


>gi|332199775|gb|EGJ13850.1| hypothetical protein SPAR69_1686 [Streptococcus pneumoniae GA41317]
          Length = 243

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 33  EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY- 91

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 92  --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 126


>gi|319794352|ref|YP_004155992.1| GTP-binding proten hflx [Variovorax paradoxus EPS]
 gi|315596815|gb|ADU37881.1| GTP-binding proten HflX [Variovorax paradoxus EPS]
          Length = 389

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAG- 276
           + I ++G++NAGKSSLFNAL K   A   D    T D  T +L L      V ISDT G 
Sbjct: 200 FNISLVGYTNAGKSSLFNALVKAR-AYAADQLFATLDTTTRNLYLGDAKRQVSISDTVGF 258

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
           IR+    +  +  K T  E  +ADL+L
Sbjct: 259 IRDLPHGL-VDAFKATLQEAVDADLLL 284


>gi|153832059|ref|ZP_01984726.1| GTP-binding protein [Vibrio harveyi HY01]
 gi|156977301|ref|YP_001448207.1| ribosomal biogenesis GTPase [Vibrio harveyi ATCC BAA-1116]
 gi|148871674|gb|EDL70515.1| GTP-binding protein [Vibrio harveyi HY01]
 gi|156528895|gb|ABU73980.1| hypothetical protein VIBHAR_06087 [Vibrio harveyi ATCC BAA-1116]
          Length = 314

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 18/117 (15%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
           WID      +     +  S++ +VQ          I+ L   ++ H  + ++G+ IR   
Sbjct: 74  WIDHFEKEHNVKAIAITTSQQSEVQK---------IMELVRKLAPH--REEIGKNIRT-- 120

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
             +I+G  N GKS++ NALA + +A+  + P  TR    I+L   G +  +SDT GI
Sbjct: 121 --MIMGIPNVGKSTIINALAGRTIAVTGNQPAVTRRQQRINLQ-NGIV--LSDTPGI 172


>gi|120602468|ref|YP_966868.1| ribosome biogenesis GTP-binding protein YsxC [Desulfovibrio
           vulgaris DP4]
 gi|166225952|sp|A1VDC5|ENGB_DESVV RecName: Full=Probable GTP-binding protein EngB
 gi|120562697|gb|ABM28441.1| GTP-binding protein, HSR1-related protein [Desulfovibrio vulgaris
           DP4]
          Length = 216

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +I + G SN GKSSL NALA +K +A  +  PG TR V    ++ EG+ +
Sbjct: 24  QIALAGRSNVGKSSLVNALARRKQLAKTSSTPGKTRSVNYYRVEPEGFYI 73


>gi|295706670|ref|YP_003599745.1| GTP-binding protein [Bacillus megaterium DSM 319]
 gi|294804329|gb|ADF41395.1| GTP-binding protein [Bacillus megaterium DSM 319]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+  NA+ K     KD+   +  PGTT D++ I LD    L
Sbjct: 156 EHYREGKDVYVVGCTNVGKSTFINAIIKEVTGEKDIITTSQYPGTTLDMIDIPLDNGASL 215

Query: 269 VKISDTAGI 277
               DT GI
Sbjct: 216 Y---DTPGI 221


>gi|291166319|gb|EFE28365.1| ribosome biogenesis GTP-binding protein YsxC [Filifactor alocis
           ATCC 35896]
          Length = 203

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 15/123 (12%)

Query: 221 KIVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++  +G SN GKSS  N  L +K +A V+  PG TR +    ++ + Y V +      + 
Sbjct: 25  QVAFVGRSNVGKSSAINTLLNRKSIARVSQSPGKTRTINFYSVNEQFYFVDLPGYGYAKL 84

Query: 280 TDDIVEKEG----IKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGT 327
           + +  E+EG    ++R F+E  N   + LL +I  +         + +   NI    I T
Sbjct: 85  SKE--EQEGWGKMMERYFIESPNLIHLFLLVDIRHEPKDSDVQMYQFAHHWNIPITVIAT 142

Query: 328 KSD 330
           KSD
Sbjct: 143 KSD 145


>gi|146089409|ref|XP_001470375.1| GTP-binding protein-like protein [Leishmania infantum]
 gi|134070408|emb|CAM68746.1| putative ras-like small GTPases [Leishmania infantum JPCM5]
          Length = 497

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G +N+GK+SL N L   +     D   TTRD + I    +G  +K+ DTAG+   
Sbjct: 230 RVAIVGRTNSGKTSLVNRLVGYERNRAADESNTTRDPIEIACTYKGRKLKLIDTAGLARQ 289

Query: 281 DDIVEKEGIKR 291
               ++E + R
Sbjct: 290 RYRTDREFLSR 300



 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 15/96 (15%)

Query: 221 KIVILGHSNAGKSSLFNAL-------AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           ++ I+G  N+GKSSLFN L       AKK+  IV D  G TRD +     L+     + D
Sbjct: 30  RVAIVGRMNSGKSSLFNLLCQDPTMPAKKN--IVKDFNGITRDCVEAHAALDNLHFTVID 87

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           T G      ++  + ++  F  VE AD  + +  ++
Sbjct: 88  TPG------LIGGKLVEEAFRTVETADAAIFVTAVD 117


>gi|15606480|ref|NP_213860.1| ferrous iron transport protein B [Aquifex aeolicus VF5]
 gi|2983693|gb|AAC07257.1| ferrous iron transport protein B [Aquifex aeolicus VF5]
          Length = 689

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G+ N GK+++ NA+A   +  V + PG T +     +  + Y +   D  GI   +
Sbjct: 6   VAVAGNPNVGKTTILNAIAGTALK-VGNWPGVTVEKKEATVRYKDYEIHFVDLPGIYTLE 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            I E E I   FLE  N D+IL
Sbjct: 65  PISEDEKIAVEFLEKGNVDVIL 86


>gi|302843681|ref|XP_002953382.1| hypothetical protein VOLCADRAFT_42065 [Volvox carteri f.
           nagariensis]
 gi|300261479|gb|EFJ45692.1| hypothetical protein VOLCADRAFT_42065 [Volvox carteri f.
           nagariensis]
          Length = 378

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + ++G  N GKSSL N+L +  VA V + PG T+ V  + LD     +K+ D+ 
Sbjct: 211 IKTAITVGVVGLPNVGKSSLINSLKRARVAQVGNTPGVTKAVQEVVLDRH---IKLLDSP 267

Query: 276 GI 277
           G+
Sbjct: 268 GV 269


>gi|289523590|ref|ZP_06440444.1| ribosome biogenesis GTP-binding protein YlqF [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503282|gb|EFD24446.1| ribosome biogenesis GTP-binding protein YlqF [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 272

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 177 DFSEEEDVQNF---SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-----IVILGHS 228
           D +EEE  + +    SK      L L+  +   ++ GKL EI +N  K     + I+G  
Sbjct: 62  DLAEEEKTKLWIKELSKLYPTFALNLRRGVPRKLT-GKLFEICKNRPKWRELRVAIVGIP 120

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           N GKS L NAL  K  + V  IPG TR V
Sbjct: 121 NVGKSMLLNALIGKKASKVGGIPGITRGV 149


>gi|255525312|ref|ZP_05392252.1| GTP-binding protein Era [Clostridium carboxidivorans P7]
 gi|296188181|ref|ZP_06856573.1| GTP-binding protein Era [Clostridium carboxidivorans P7]
 gi|255510984|gb|EET87284.1| GTP-binding protein Era [Clostridium carboxidivorans P7]
 gi|296047307|gb|EFG86749.1| GTP-binding protein Era [Clostridium carboxidivorans P7]
          Length = 293

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ I I+G  N GKS+L N++  + ++IV+  P TTR+ +   L  + + +   DT
Sbjct: 1   MFKSGF-ITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNNIQTILTEKDFQLVFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +K     ++  DLIL L
Sbjct: 60  PGIHKPKHKLGEFMVKIAQDSIKEVDLILFL 90


>gi|228477071|ref|ZP_04061709.1| ribosome biogenesis GTPase YqeH [Streptococcus salivarius SK126]
 gi|228251090|gb|EEK10261.1| ribosome biogenesis GTPase YqeH [Streptococcus salivarius SK126]
          Length = 372

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R    + ++G +N GKS+L NA+ K     KD+   +  PGTT D + I LD   Y 
Sbjct: 158 EKLRKSRDVYVVGVTNVGKSTLINAIIKEITGDKDIITTSRFPGTTLDKIEIPLDDGTY- 216

Query: 269 VKISDTAGI 277
             I DT GI
Sbjct: 217 --IFDTPGI 223


>gi|239815184|ref|YP_002944094.1| GTP-binding proten HflX [Variovorax paradoxus S110]
 gi|239801761|gb|ACS18828.1| GTP-binding proten HflX [Variovorax paradoxus S110]
          Length = 389

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAG- 276
           + I ++G++NAGKSSLFNAL K   A   D    T D  T +L L      V ISDT G 
Sbjct: 200 FNISLVGYTNAGKSSLFNALVKAR-AYAADQLFATLDTTTRNLYLGDARRQVSISDTVGF 258

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
           IR+    +  +  K T  E  +ADL+L
Sbjct: 259 IRDLPHGL-VDAFKATLQEAVDADLLL 284


>gi|297584672|ref|YP_003700452.1| ribosome biogenesis GTPase YqeH [Bacillus selenitireducens MLS10]
 gi|297143129|gb|ADH99886.1| ribosome biogenesis GTPase YqeH [Bacillus selenitireducens MLS10]
          Length = 373

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK----DVAIVT--DIPGTTRDVLTIDLDLEGY 267
           E  RNG  + I G +N GKS+  N L K+    D  ++T  +IPGTT D++ + LD    
Sbjct: 160 EEYRNGKDVFIAGSTNTGKSTFINRLLKEYGAADELMITTSNIPGTTLDMIDVPLDDGSS 219

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           L    DT GI  T  +  +  + R+ L+      IL  KE+  K
Sbjct: 220 LY---DTPGIINTHQMAHR--VDRSTLKT-----ILPRKEVKPK 253


>gi|150015731|ref|YP_001307985.1| GTP-binding protein Era [Clostridium beijerinckii NCIMB 8052]
 gi|189037260|sp|A6LRP9|ERA_CLOB8 RecName: Full=GTPase Era
 gi|149902196|gb|ABR33029.1| GTP-binding protein Era [Clostridium beijerinckii NCIMB 8052]
          Length = 298

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ + I+G  N GKS+L N +  + ++IV++ P TTR+ +   L  + Y +   DT
Sbjct: 1   MFKSGF-VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGDDYQMIFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +       ++ DL+L L
Sbjct: 60  PGIHKPKHKLGEYMVNSAKESTKDVDLVLFL 90


>gi|296273975|ref|YP_003656606.1| ferrous iron transport protein B [Arcobacter nitrofigilis DSM 7299]
 gi|296098149|gb|ADG94099.1| ferrous iron transport protein B [Arcobacter nitrofigilis DSM 7299]
          Length = 706

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS L N+++   +  V +  G T +   I+   + YL +I+D  G    
Sbjct: 11  RIALVGQPNVGKSMLINSISNSKLR-VGNFSGVTVEKKQIEFQHDDYLFQITDLPGSYSL 69

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           +D   +E + + +LE  + D+IL
Sbjct: 70  NDYTIEEKVTKNYLEKGDYDIIL 92


>gi|238750966|ref|ZP_04612463.1| Predicted GTPase [Yersinia rohdei ATCC 43380]
 gi|238710880|gb|EEQ03101.1| Predicted GTPase [Yersinia rohdei ATCC 43380]
          Length = 287

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           I I+G +  GKSSL NAL   +V+ V+D+   TR+ L     + G  + + D  GI E+
Sbjct: 39  IGIMGKTGTGKSSLCNALFAGEVSPVSDVAACTREPLRFRFQVGGRFMTLMDLPGIGES 97


>gi|225850199|ref|YP_002730433.1| GTP-binding protein Era [Persephonella marina EX-H1]
 gi|225646733|gb|ACO04919.1| GTP-binding protein Era [Persephonella marina EX-H1]
          Length = 305

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+ + ++G  N GKS++ N +    ++IV+  P TTR  +L +  + +  ++   DT 
Sbjct: 8   RAGF-VALIGRPNVGKSTIMNNILGTKLSIVSPKPQTTRMRILGVKHNKDAQII-FLDTP 65

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           GI++  D++ K  ++     +E AD+++++ E
Sbjct: 66  GIQKGKDLLTKTVVESAVSSMEEADVLVMIIE 97


>gi|238578890|ref|XP_002388869.1| hypothetical protein MPER_12069 [Moniliophthora perniciosa FA553]
 gi|215450554|gb|EEB89799.1| hypothetical protein MPER_12069 [Moniliophthora perniciosa FA553]
          Length = 554

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G+ N GKSSL N+L +  V  V    G T+DV ++ L+     ++I D+ G+   D
Sbjct: 217 IGVVGYPNVGKSSLINSLKRNKVCGVAAQAGFTKDVQSVQLE---RGMRIIDSPGVVFDD 273

Query: 282 DIVEKEGIK------RTFLEVENA-DLILLLKEI 308
           D  E +G K      R  ++VE+  D I +++EI
Sbjct: 274 DDEEVKGQKKGSVSLRNVVKVEDVDDPIAVVEEI 307


>gi|154339145|ref|XP_001562264.1| GTP-binding protein-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134062847|emb|CAM39292.1| putative ras-like small GTPases [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 511

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           ++ I+G +N+GK+SL N L   +     D   TTRD + I    +G  +K+ DTAG+
Sbjct: 244 RVAIVGRTNSGKTSLVNRLLGYERNRAADATNTTRDPIEIPCTYKGKKLKLIDTAGL 300



 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 15/96 (15%)

Query: 221 KIVILGHSNAGKSSLFNAL-------AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           ++ I+G  N+GKSSLFN L       AKK+  IV D  G TRD +     L      I D
Sbjct: 44  RVAIVGRMNSGKSSLFNLLCQDPTMPAKKN--IVKDFNGITRDCVEAHAVLNDLHFTIID 101

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           T G      +V  + ++  F  VE AD  + +  ++
Sbjct: 102 TPG------LVGGKLVEEAFRTVETADAAIFVTAVD 131


>gi|83311472|ref|YP_421736.1| GTPase [Magnetospirillum magneticum AMB-1]
 gi|82946313|dbj|BAE51177.1| GTPase [Magnetospirillum magneticum AMB-1]
          Length = 435

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 28/184 (15%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y IV L G++NAGKS+LFN L + +V +  D+   T D    DL L  G  + +SDT
Sbjct: 202 RVPYPIVALVGYTNAGKSTLFNQLTRAEV-LAKDMLFATLDPTMRDLVLPSGRKIILSDT 260

Query: 275 AG-------------------IRETDDIVEKEGIKRTFLEVENADLILLLKEIN-----S 310
            G                   + E D +V    +     E + AD+  +LKE+       
Sbjct: 261 VGFISDLPHELVAAFRATLEEVLEADVVVHVRDVSHPDTEAQAADVDTVLKELGLAEVVD 320

Query: 311 KKEISFPKNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           +  +     ID +    + + L      E    +S+ TG+G++EL+ ++   L +  + +
Sbjct: 321 RGLVEALNKIDLLDDERRQEVLNQARRREGVMALSAVTGQGVDELLAELDRRLGHARETI 380

Query: 370 PFSI 373
             ++
Sbjct: 381 DVAL 384


>gi|268318261|ref|YP_003291980.1| GTP-binding proten HflX [Rhodothermus marinus DSM 4252]
 gi|262335795|gb|ACY49592.1| GTP-binding proten HflX [Rhodothermus marinus DSM 4252]
          Length = 442

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 36/204 (17%)

Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDT 274
           R  Y ++ ++G++NAGKS+L N LA  +V +  D    T D  T  + LE G  V +SDT
Sbjct: 196 RQRYTRVSLVGYTNAGKSTLMNVLAGTNV-LAEDRLFATLDATTRLVHLEPGKPVLLSDT 254

Query: 275 AG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--------- 324
            G IR+    +  E  K T  EV  +D++L L +    +   F  +I  +          
Sbjct: 255 VGFIRKLPHRL-IESFKSTLDEVRESDVLLHLVDATHPR---FEDHIQVVHETLAELGAA 310

Query: 325 ----------------IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
                           +G    L + Y E     IS+  G GLEEL  +++  +  +  +
Sbjct: 311 DKPMLLVFNKIDRLADLGLLQALRTEYPEAV--FISALRGIGLEELKRRLQERIEAEALE 368

Query: 369 LPFSIP-SHKRHLYHLSQTVRYLE 391
           L   +P +  R L +L Q    LE
Sbjct: 369 LDVCVPLTEGRTLSYLYQVADVLE 392


>gi|260887083|ref|ZP_05898346.1| ribosome biogenesis GTP-binding protein YsxC [Selenomonas sputigena
           ATCC 35185]
 gi|330839140|ref|YP_004413720.1| ribosome biogenesis GTP-binding protein YsxC [Selenomonas sputigena
           ATCC 35185]
 gi|260863145|gb|EEX77645.1| ribosome biogenesis GTP-binding protein YsxC [Selenomonas sputigena
           ATCC 35185]
 gi|329746904|gb|AEC00261.1| ribosome biogenesis GTP-binding protein YsxC [Selenomonas sputigena
           ATCC 35185]
          Length = 207

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 37/195 (18%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTID 261
           I+S + + +  E+ R   +IV +G SN GKSSL N+LA+ K++A V+  PG T+ +   +
Sbjct: 13  IASAVKKEQYPEVRRR--EIVFIGRSNVGKSSLINSLARTKNLARVSGQPGKTQTINFYE 70

Query: 262 L--DLEG-------YLVKISDTAGIR--ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           L   +EG       YLV +      R  + +  +    I+   L+ E+   +  L +I  
Sbjct: 71  LGAKIEGEDERCDFYLVDLPGYGYARTAKKNRKIWSRFIEAYLLQSEDLQFVCQLMDIRH 130

Query: 311 KKEIS--------FPKNIDFIFIGTKSDLYSTYTE--------------EYDHL-ISSFT 347
           +   S          K +  + I TK+D  S   +              E D L  SS  
Sbjct: 131 EPMASDIEMFQWLVAKGLPVLVIATKADKLSRNEQKKSIAAMRRALGVAELDILPYSSVK 190

Query: 348 GEGLEELINKIKSIL 362
            EG  EL++ I ++L
Sbjct: 191 NEGRSELLDAIANVL 205


>gi|315230562|ref|YP_004070998.1| GTP-binding Era-like protein [Thermococcus barophilus MP]
 gi|315183590|gb|ADT83775.1| GTP-binding Era-like protein [Thermococcus barophilus MP]
          Length = 188

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           K+ I+G  N GKS+L NAL  K V+   +IPGTT+ ++
Sbjct: 3   KVAIIGAENVGKSTLMNALLGKRVSETAEIPGTTKSII 40


>gi|229916327|ref|YP_002884973.1| GTP-binding protein Era [Exiguobacterium sp. AT1b]
 gi|229467756|gb|ACQ69528.1| GTP-binding protein Era [Exiguobacterium sp. AT1b]
          Length = 302

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 47/176 (26%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID------LDLEG----- 266
           + I+G  N GKS+  N +  + +AI++D P TTR+    V T D      +D  G     
Sbjct: 11  VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVYTTDDSQIIFIDTPGIHKPK 70

Query: 267 -----YLVKISDTAGIRETD------DIVEKEGIKRTF----LEVENADLILLLKEINSK 311
                +++K++ T  +RE D      ++ E  G    F    L+  +  +IL++ +I+  
Sbjct: 71  HRLGDFMMKVA-TNALREVDAILFMVNVTEPRGAGDDFIIEKLKGLDTPIILVMNKIDLI 129

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILS 363
                PK I+             YT E D      IS+  G  +E L+ +IK +L 
Sbjct: 130 HPDELPKVIE------------QYTNELDFAAYVPISALQGNNVEPLLGEIKKLLP 173


>gi|78185078|ref|YP_377513.1| GTP-binding protein Era [Synechococcus sp. CC9902]
 gi|78169372|gb|ABB26469.1| GTP-binding protein Era [Synechococcus sp. CC9902]
          Length = 319

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I ++G  N GKS+L N L  + VAI + +  TTR+ L   L  E   + + DT G
Sbjct: 18  RSGF-IALIGRPNVGKSTLLNKLVGEKVAITSPVAQTTRNRLRAILTTEESQMVLVDTPG 76

Query: 277 IRETDDIV 284
           I +   ++
Sbjct: 77  IHKPHHLL 84


>gi|30022413|ref|NP_834044.1| GTP-binding protein YqeH [Bacillus cereus ATCC 14579]
 gi|29897971|gb|AAP11245.1| GTP-binding protein [Bacillus cereus ATCC 14579]
          Length = 358

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 25/165 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R G  + ++G +N GKS+  N + K      ++V   +  PGTT D++ I LD E  
Sbjct: 155 EYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFIFI 325
           L    DT GI     +    G +   L     ++  ++ ++N ++ + F      D++  
Sbjct: 215 LY---DTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG 271

Query: 326 GTKS---------DLYSTYTEEYDHLISSFTGEGL-----EELIN 356
           G ++          ++ T  E+ D L  +  G+ L     EEL N
Sbjct: 272 GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPTPEELAN 316


>gi|332829470|gb|EGK02119.1| ribosome biogenesis GTPase RsgA 1 [Dysgonomonas gadei ATCC BAA-286]
          Length = 355

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 16/116 (13%)

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           +ADL F E+E ++ +  K +   I      I    +  +L E I  G  +V +G S  GK
Sbjct: 149 KADLGFDEQE-IEKYV-KHIARQISVFFTSIHHPETILRLRESIIEGETVVFVGSSGVGK 206

Query: 233 SSLFNALAKKDVAIVTDIP---------GTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           SSL NAL +K V + +DI           T R++L   ++  G L+   DT G+RE
Sbjct: 207 SSLVNALCEKSVLLTSDISLSTGKGRHTSTRREMLL--MNGSGVLI---DTPGVRE 257


>gi|309811288|ref|ZP_07705077.1| GTP-binding protein HflX [Dermacoccus sp. Ellin185]
 gi|308434770|gb|EFP58613.1| GTP-binding protein HflX [Dermacoccus sp. Ellin185]
          Length = 508

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 23/181 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   + I G++NAGKSS+ N L    V +   +  T    +      +G    ++DT G 
Sbjct: 286 NVPSVAIAGYTNAGKSSILNRLTNAGVLVQNQLFATLDPTVRRAETADGRAYTLADTVGF 345

Query: 278 RETDDIVEK--EGIKRTFLEVENADLILLL---------KEINSKKEISF---PKNIDFI 323
               D+  +  E  + T  EV +ADL+L +          +I++ +E+       ++  I
Sbjct: 346 --VRDLPHQLVEAFRSTLEEVADADLLLHVVDGSHPDPESQISAVREVLADVDASDVKEI 403

Query: 324 FIGTKSDLYST-------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            +  K+D+            E+Y   +S+ TG GL EL+  I   L    +++   +P  
Sbjct: 404 IVINKADVADPDVIDRLMRHEKYAIAVSARTGAGLPELLQLIADELPKPERRVDVLLPYE 463

Query: 377 K 377
           +
Sbjct: 464 R 464


>gi|294054588|ref|YP_003548246.1| GTP-binding proten HflX [Coraliomargarita akajimensis DSM 45221]
 gi|293613921|gb|ADE54076.1| GTP-binding proten HflX [Coraliomargarita akajimensis DSM 45221]
          Length = 421

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 30/219 (13%)

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKD 243
              + V   I  +K ++ S I    L    R    +    I+G++NAGKSSL N L   D
Sbjct: 162 LDQRMVRTQIARVKRELDSVIQHRHLQRKKRMTVPVPTCAIVGYTNAGKSSLLNKLTNSD 221

Query: 244 VAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + +  D    T D  +    L  G  + I+DT G          +  K T  E   ++ +
Sbjct: 222 I-LAEDKLFATLDPTSRRCPLPSGQPLVITDTVGFVRNLPHRLVDAFKATLEEAVVSNFL 280

Query: 303 LLLKEINS---------------------KKEISFPKNIDFIF-IGTKSDLYSTYTEEYD 340
           L + ++NS                     K+ I+    ID ++   T   L   Y + + 
Sbjct: 281 LHVLDVNSPEVEAHAETTLSVLHELGAKDKQIITVFNKIDALWDPETMDSLKLRYPDAF- 339

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             IS+ +GEG+++L+  I++I+   + +L   IP H R+
Sbjct: 340 -FISAHSGEGVDQLLAAIEAIIEANYAQLRLLIP-HSRY 376


>gi|14590961|ref|NP_143036.1| GTP-binding protein hflX [Pyrococcus horikoshii OT3]
 gi|3257549|dbj|BAA30232.1| 426aa long hypothetical GTP-binding protein hflX [Pyrococcus
           horikoshii OT3]
          Length = 426

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G++NAGKS+L NAL  +D+     +  TT D  T    ++G ++ ++DT G  +  
Sbjct: 191 IALAGYTNAGKSTLLNALTGEDIEAKNQM-FTTLDTTTRRFKVKGKMLLVTDTVGFIDGL 249

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
                E    T  E+  AD+I+L+
Sbjct: 250 PPFIVEAFHSTLEEIVKADIIILV 273


>gi|329923417|ref|ZP_08278899.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp. HGF5]
 gi|328941309|gb|EGG37603.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp. HGF5]
          Length = 370

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 16/105 (15%)

Query: 203 ISSHISQGK--LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------P 251
           +SS + QGK  LGE +  G  + I G S AGKS+L N L+ +++  V  I          
Sbjct: 184 VSSLMDQGKEQLGEYLVQGKTVAITGTSGAGKSTLLNWLSGQEMQRVQGIREEDARGRHT 243

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
            T R++      L G  V + DT G+RE      +EG + TF ++
Sbjct: 244 TTHRELFV----LPGGAVMV-DTPGMRELQLWDSEEGFEATFADI 283


>gi|219123096|ref|XP_002181867.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406468|gb|EEC46407.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 489

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           ++  LG SN GKSSL NAL ++D+A ++  PG T+ V
Sbjct: 211 EVAFLGRSNVGKSSLINALMRRDLARISKQPGRTQQV 247


>gi|148273200|ref|YP_001222761.1| putative GTP-binding protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831130|emb|CAN02082.1| putative GTP-binding protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 521

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 34/203 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G++NAGKSSL N + K  V    A+   +  T R   T     +G L  ++DT G 
Sbjct: 301 VAIVGYTNAGKSSLLNRVTKAGVLVENALFATLDATVRKTETD----QGQLYTLADTVGF 356

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL---------------LLKEINSKKEISFPKNIDF 322
                    E  + T  E+ ++D+++                + E+ ++ + S   +I  
Sbjct: 357 VRNLPHQLVEAFRSTLEELADSDVLVHVVDASHPDPAAQLATVHEVIAEVDAS---SIPE 413

Query: 323 IFIGTKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP- 374
           I +  KSDL S                +S+ TGEG+EEL  +I  +L     ++   +P 
Sbjct: 414 IVVFNKSDLASDGDRVVLRGLAPQGVFVSARTGEGVEELRRRIAELLPQPTIEVDLLVPF 473

Query: 375 SHKRHLYHLSQTVRYLEMASLNE 397
            H   +  L    + LE A + E
Sbjct: 474 EHGEIVAMLHDGAKVLETAYVEE 496


>gi|323137543|ref|ZP_08072620.1| GTP-binding protein Era [Methylocystis sp. ATCC 49242]
 gi|322397169|gb|EFX99693.1| GTP-binding protein Era [Methylocystis sp. ATCC 49242]
          Length = 307

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 32/189 (16%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKI 271
           G+  R G+   ++G  NAGKS+L N L    V+IV+    TTR  V  I +D    ++ +
Sbjct: 8   GQETRCGFA-ALVGAPNAGKSTLLNQLVGAKVSIVSRKAQTTRALVRGIAIDGPAQII-L 65

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL--------KEINS----KKEISFPK- 318
            DT GI +    +++  +        +AD++ LL        +E+ S      E+  PK 
Sbjct: 66  VDTPGIFKPKRRLDRAMVASALSGATDADVVALLVDARRGLDEEVESILTQLAEVKAPKI 125

Query: 319 ----NIDFI------FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
                ID I       +  K +    + E +  ++S+ TG+G+ +L    +  L  + K 
Sbjct: 126 LVLNKIDVIAREKLLALAAKMNERGKFEETF--MVSALTGDGVGDL----RHALGKRMKP 179

Query: 369 LPFSIPSHK 377
            P+  P  +
Sbjct: 180 GPWLYPEDQ 188


>gi|308375657|ref|ZP_07668083.1| putative ribosome-associated GTPase EngA [Mycobacterium
           tuberculosis SUMu007]
 gi|308380153|ref|ZP_07669129.1| putative ribosome-associated GTPase EngA [Mycobacterium
           tuberculosis SUMu011]
 gi|308345615|gb|EFP34466.1| putative ribosome-associated GTPase EngA [Mycobacterium
           tuberculosis SUMu007]
 gi|308362468|gb|EFP51319.1| putative ribosome-associated GTPase EngA [Mycobacterium
           tuberculosis SUMu011]
          Length = 262

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + ++G  N GKSSL N LA    ++V +  GTT D +   ++L G + +  DTAG+R 
Sbjct: 1   MALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRR 58


>gi|302522652|ref|ZP_07274994.1| ribosome small subunit-dependent GTPase A [Streptomyces sp. SPB78]
 gi|302431547|gb|EFL03363.1| ribosome small subunit-dependent GTPase A [Streptomyces sp. SPB78]
          Length = 333

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 16/147 (10%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQ---NFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
           W    T +    +ADL    E       + +S     ++L +  D    + +  L +++ 
Sbjct: 168 WESGATPVLVLTKADLVPDPETRAHLLADAASAAPGVEVLAVSGDTGEGVPE--LRQVLA 225

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD---VAIVTDIPGTTRDVLT----IDLDLEGYLVK 270
            G   V+LG S AGKS+L NALA+     V  V D  G  R   T    I L   G L+ 
Sbjct: 226 GGTS-VLLGRSGAGKSTLANALAEAPHMRVQAVRDQDGKGRHTTTTRNLIPLPAGGVLI- 283

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVE 297
             DT G+R         G+ + F E+E
Sbjct: 284 --DTPGLRGVGLWGAGHGVGQVFAEIE 308


>gi|322499842|emb|CBZ34915.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 497

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G +N+GK+SL N L   +     D   TTRD + I    +G  +K+ DTAG+   
Sbjct: 230 RVAIVGRTNSGKTSLVNRLVGYERNRAADESNTTRDPIEIACTYKGRKLKLIDTAGLARQ 289

Query: 281 DDIVEKEGIKR 291
               ++E + R
Sbjct: 290 RYRTDREFLSR 300



 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 15/96 (15%)

Query: 221 KIVILGHSNAGKSSLFNAL-------AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           ++ I+G  N+GKSSLFN L       AKK+  IV D  G TRD +     L+     + D
Sbjct: 30  RVAIVGRMNSGKSSLFNLLCQDPTMPAKKN--IVKDFNGITRDCVEAHAALDDLHFTVID 87

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           T G      ++  + ++  F  VE AD  + +  ++
Sbjct: 88  TPG------LIGGKLVEEAFRTVETADAAIFVTAVD 117


>gi|170724261|ref|YP_001751949.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas putida
           W619]
 gi|229463764|sp|B1JFJ3|ENGB_PSEPW RecName: Full=Probable GTP-binding protein EngB
 gi|169762264|gb|ACA75580.1| small GTP-binding protein [Pseudomonas putida W619]
          Length = 210

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +V N IL L    +  +S  K+ +   + GY++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QVKNPILGLCQKATFALSAAKVEQCPDDQGYEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTRDVLTIDLDLEGYLVKI 271
            PG T+ +    LD E  LV +
Sbjct: 62  TPGRTQLLNFFSLDDERRLVDL 83


>gi|261403500|ref|YP_003247724.1| GTP-binding protein HSR1-releated protein [Methanocaldococcus
           vulcanius M7]
 gi|261370493|gb|ACX73242.1| GTP-binding protein HSR1-releated protein [Methanocaldococcus
           vulcanius M7]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L E+ +   KI I+G+ N GKSS+ NAL  K  AI  +I G T+    I+L      +K+
Sbjct: 98  LREMGKKEGKIGIVGYPNVGKSSIINALTGKRKAITGNIAGLTKGEQWINLTKN---IKL 154

Query: 272 SDTAGI---RETDDIV 284
            DT G+   ++ DD+V
Sbjct: 155 MDTPGVIEMKDEDDLV 170


>gi|255561072|ref|XP_002521548.1| GTP-binding protein era, putative [Ricinus communis]
 gi|223539226|gb|EEF40819.1| GTP-binding protein era, putative [Ricinus communis]
          Length = 443

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + ++G  N GKS+L N +  + ++IVTD P TTR  +        Y + + DT G
Sbjct: 144 RSGY-VAVVGKPNVGKSTLSNQMIGQKLSIVTDKPQTTRHRILGICSGPDYQMVLYDTPG 202

Query: 277 I 277
           +
Sbjct: 203 V 203


>gi|163801603|ref|ZP_02195501.1| ribosomal biogenesis GTPase [Vibrio sp. AND4]
 gi|159174520|gb|EDP59322.1| ribosomal biogenesis GTPase [Vibrio sp. AND4]
          Length = 314

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 18/117 (15%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
           WID      +     +  S+ ++VQ          I+ L   ++ H  + ++G+ IR   
Sbjct: 74  WIDHFEKEHNVKAIAITTSQSQEVQK---------IMELVRKLAPH--REEIGKNIRT-- 120

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
             +I+G  N GKS++ NALA + +A+  + P  TR    I+L   G +  +SDT GI
Sbjct: 121 --MIMGIPNVGKSTIINALAGRTIAVTGNQPAVTRRQQRINLQ-NGIV--LSDTPGI 172


>gi|13236176|gb|AAK16073.1|AF288079_1 NgrB [Photorhabdus luminescens]
          Length = 136

 Score = 41.2 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L+N I  H+ +    E +     I I+G + AGKSSL NAL + +V  V+++   TRDVL
Sbjct: 21  LRNHILEHLQKVTQYEPV-----IGIMGKTGAGKSSLCNALFQGEVTPVSNVEPCTRDVL 75

Query: 259 TIDLDLEGYLVKISDTAGIRETD 281
              L    + +   D  G+ E++
Sbjct: 76  RFRLKSGTHSLMTVDLPGVGESE 98


>gi|332360874|gb|EGJ38680.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK49]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|319441573|ref|ZP_07990729.1| putative GTP-binding protein [Corynebacterium variabile DSM 44702]
          Length = 483

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 28/212 (13%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAI 246
           + + ND+  L+ +I+       +    R+     ++ I G++NAGKSSL NAL    V +
Sbjct: 226 QRIRNDMAKLRREITGMKKARDIKRRQRDSSAVAQVAIAGYTNAGKSSLLNALTGAGV-L 284

Query: 247 VTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-- 303
           V D    T D  T   +L +G  V  SDT G          E  + T  EV  AD++L  
Sbjct: 285 VEDALFATLDPTTRRAELADGRTVVFSDTVGFIRFLPTQLVEAFRSTLEEVMAADVVLHV 344

Query: 304 -----------------LLKEINSKKEISFPKNIDFIFIGTKSD--LYSTYTEEYDHLI- 343
                            ++ EI  +     P  I  +     +D  + +      D +I 
Sbjct: 345 VDGSDPFPMEQIAAVNKVIGEIAEETGEDAPPEILVVNKVDAADPLVLADLRNRLDDVIF 404

Query: 344 -SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            S+ TGEG+ EL ++++  L++   ++  S+P
Sbjct: 405 VSASTGEGIAELESRLELFLNSMDARVTLSVP 436


>gi|312862638|ref|ZP_07722878.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           vestibularis F0396]
 gi|311101498|gb|EFQ59701.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           vestibularis F0396]
          Length = 284

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|227878694|ref|ZP_03996608.1| GTP-binding protein [Lactobacillus crispatus JV-V01]
 gi|256843288|ref|ZP_05548776.1| GTP-binding protein Era [Lactobacillus crispatus 125-2-CHN]
 gi|256850355|ref|ZP_05555783.1| GTP-binding protein Era [Lactobacillus crispatus MV-1A-US]
 gi|262046497|ref|ZP_06019459.1| GTP-binding protein Era [Lactobacillus crispatus MV-3A-US]
 gi|293380657|ref|ZP_06626708.1| GTP-binding protein Era [Lactobacillus crispatus 214-1]
 gi|312978179|ref|ZP_07789923.1| GTP-binding protein Era [Lactobacillus crispatus CTV-05]
 gi|227861709|gb|EEJ69314.1| GTP-binding protein [Lactobacillus crispatus JV-V01]
 gi|256614708|gb|EEU19909.1| GTP-binding protein Era [Lactobacillus crispatus 125-2-CHN]
 gi|256712752|gb|EEU27745.1| GTP-binding protein Era [Lactobacillus crispatus MV-1A-US]
 gi|260573368|gb|EEX29926.1| GTP-binding protein Era [Lactobacillus crispatus MV-3A-US]
 gi|290922785|gb|EFD99736.1| GTP-binding protein Era [Lactobacillus crispatus 214-1]
 gi|310894897|gb|EFQ43967.1| GTP-binding protein Era [Lactobacillus crispatus CTV-05]
          Length = 300

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 28/165 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + ++G  N GKS+L N L  + VAI ++ P TTR+ ++     +   V   DT GI    
Sbjct: 11  VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDEMQVVFVDTPGIFKPH 70

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKE-----------INSKKEISFP-----KNID 321
            + DD ++K  +      + + DL+L + E            N  KE+  P       +D
Sbjct: 71  SKLDDYMDKASVS----SLNDVDLVLFMVEPEEMGKGDQYIANLLKEVKVPVLLVINKVD 126

Query: 322 FIFIGTKSDLYSTY--TEEYDHL--ISSFTGEGLEELINKIKSIL 362
            I       +  +Y   E +  +  IS+  G G+E+L+  IK  L
Sbjct: 127 EIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLKTIKEYL 171


>gi|116781116|gb|ABK21971.1| unknown [Picea sitchensis]
          Length = 317

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 208 SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLE 265
           S G+  +  +N   +I ++G SN GKSSL N+L  KKDVA+ +  PG T+ +    ++  
Sbjct: 123 SSGRAKDCPKNALPEIAMMGRSNVGKSSLINSLVRKKDVAMTSKTPGKTQLINHFLINKS 182

Query: 266 GYLVKI 271
            Y+V +
Sbjct: 183 WYIVDL 188


>gi|124026406|ref|YP_001015521.1| GTP-binding protein Era [Prochlorococcus marinus str. NATL1A]
 gi|123961474|gb|ABM76257.1| GTP-binding protein Era [Prochlorococcus marinus str. NATL1A]
          Length = 313

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 212 LGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           LG++ +  +K   I ++G  N GKS+  N    + +AI + I  TTR+ L + L  E   
Sbjct: 3   LGDLSQEDFKSGFIALIGRPNVGKSTFINKFIGEKIAITSPIAQTTRNRLKVILTNEKSQ 62

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +   DT GI +   ++ +  ++     + + D +L++ E
Sbjct: 63  IIFVDTPGIHKPHHLLGERLVQSAKRSIGDVDAVLVIFE 101


>gi|111221450|ref|YP_712244.1| GTP-binding protein Era [Frankia alni ACN14a]
 gi|111148982|emb|CAJ60662.1| putative GTP-binding protein [Frankia alni ACN14a]
          Length = 314

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 11/137 (8%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
            SH   G      R+G+  ++ G  NAGKS+L NAL    VAI +  P TTR  +   + 
Sbjct: 4   PSHAPGGTTPAEFRSGFACLV-GRPNAGKSTLTNALVGTKVAITSGRPQTTRHAIRGIVH 62

Query: 264 LEGYLVKISDTAGIRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK------KEI 314
                + + DT G+     ++ +   + ++ T  EV+     +   E   +      +E+
Sbjct: 63  RTDAQLVLVDTPGLHRPRTLLGQRLNDVVRATLSEVDVVGFCMPADEPVGRGDRFIAEEL 122

Query: 315 S-FPKNIDFIFIGTKSD 330
           S  PK    + I TK+D
Sbjct: 123 SRLPKRTPVVAILTKTD 139


>gi|71894402|ref|YP_278510.1| GTP-binding protein Era [Mycoplasma synoviae 53]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDD 282
           ++G  NAGKSSL N +   +++IVT +  TTR+ +T  +  EG L +   DT GI +   
Sbjct: 1   MVGRPNAGKSSLLNTILGYNLSIVTPVAQTTRNQIT-GVYTEGNLQIIFIDTPGIHKPKS 59

Query: 283 IVEKEGIKRTFLEVENADLILLL 305
           +  +   K  F    + DL+L L
Sbjct: 60  LFGEHLNKEAFDTFSSVDLVLFL 82


>gi|28211641|ref|NP_782585.1| GTP-binding protein Era [Clostridium tetani E88]
 gi|75541993|sp|Q892S2|ERA_CLOTE RecName: Full=GTPase Era
 gi|28204083|gb|AAO36522.1| GTP-binding protein era [Clostridium tetani E88]
          Length = 295

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ I ++G  N GKS+L N + K+ ++IV+  P TTR+ +   L  E   +   DT
Sbjct: 1   MFKSGF-ITVIGRPNVGKSTLLNNIMKEKLSIVSHKPQTTRNNIQTILTQEDCQIVFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            G+ +    + +  +K     ++  D++L +
Sbjct: 60  PGMHKPKHKLGEYMVKVAEEALKGVDIVLFM 90


>gi|28199177|ref|NP_779491.1| GTP-binding protein Era [Xylella fastidiosa Temecula1]
 gi|182681908|ref|YP_001830068.1| GTP-binding protein Era [Xylella fastidiosa M23]
 gi|32129517|sp|Q87C05|ERA_XYLFT RecName: Full=GTPase Era
 gi|226741405|sp|B2I605|ERA_XYLF2 RecName: Full=GTPase Era
 gi|28057283|gb|AAO29140.1| GTP binding protein [Xylella fastidiosa Temecula1]
 gi|182632018|gb|ACB92794.1| GTP-binding protein Era [Xylella fastidiosa M23]
 gi|307578163|gb|ADN62132.1| GTP-binding protein Era [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 298

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGI-R 278
           +I ++G  N GKS+L NAL    ++IV++ P TTR  +L I    EG ++ + DT G+ R
Sbjct: 11  RIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQII-LVDTPGLHR 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE 307
           E    + +   +     +E+ D  LL+ E
Sbjct: 70  EQKHPMNRLMNRTARGSLEDVDAALLVTE 98


>gi|298206898|ref|YP_003715077.1| putative GTP-binding protein [Croceibacter atlanticus HTCC2559]
 gi|83849532|gb|EAP87400.1| putative GTP-binding protein [Croceibacter atlanticus HTCC2559]
          Length = 294

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 2/99 (2%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +    
Sbjct: 10  IIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGEDFQIVLSDTPGIIKPAYQ 69

Query: 284 VEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKNI 320
           +++  +       E+AD+++ + EI   S K+ +F K I
Sbjct: 70  LQENMMDFVKSAFEDADVLIYMVEIGEQSLKDEAFFKKI 108


>gi|325687471|gb|EGD29492.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK72]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|295693063|ref|YP_003601673.1| GTP-binding protein era homolog [Lactobacillus crispatus ST1]
 gi|295031169|emb|CBL50648.1| GTP-binding protein era homolog [Lactobacillus crispatus ST1]
          Length = 300

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 34/168 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + ++G  N GKS+L N L  + VAI ++ P TTR+ ++     +   V   DT GI    
Sbjct: 11  VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDEMQVVFVDTPGIFKPH 70

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKE-----------INSKKEISFPKNIDFIFIG 326
            + DD ++K  +      + + DL+L + E            N  KE+  P     + I 
Sbjct: 71  SKLDDYMDKASVS----SLNDVDLVLFMVEPEEMGKGDQYIANLLKEVKVPV---LLVIN 123

Query: 327 TKSDLYST----YTEEYDHL--------ISSFTGEGLEELINKIKSIL 362
              D++        + Y  L        IS+  G G+E+L+  IK  L
Sbjct: 124 KVDDIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLKTIKEYL 171


>gi|295398008|ref|ZP_06808064.1| GTP-binding protein Era [Aerococcus viridans ATCC 11563]
 gi|294973766|gb|EFG49537.1| GTP-binding protein Era [Aerococcus viridans ATCC 11563]
          Length = 332

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 13/104 (12%)

Query: 218 NGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVK 270
           +GYK   + I+G  N GKS+  N +  + VAI++D   TTR+    V T D   E  +V 
Sbjct: 33  DGYKSGFVAIVGRPNVGKSTFLNRVVGQKVAIMSDKAQTTRNKIQAVYTTD---EAQIVF 89

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           I DT GI +  + + +   K  +  +E  D IL+L  +N+++ I
Sbjct: 90  I-DTPGIHKPHNELGEFMNKSAYQSLEEVDAILML--VNAEEPI 130


>gi|288871688|ref|ZP_06118601.2| GTP-binding protein [Clostridium hathewayi DSM 13479]
 gi|288862428|gb|EFC94726.1| GTP-binding protein [Clostridium hathewayi DSM 13479]
          Length = 407

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 24/166 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I   G  NAGKSS+ NA+  +++++V+DI GTT D +   ++L   G +V I DT G  +
Sbjct: 15  IGFFGRRNAGKSSIVNAVTGQELSVVSDIKGTTTDPVYKSMELLPMGPVV-IIDTPGFDD 73

Query: 280 TDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKE-------ISFPKNIDFIFIGTKSDL 331
              + E   +K+T   +  AD  +L++  +  K +       +   K I F+    K DL
Sbjct: 74  EGALGELR-VKKTREILNRADCAVLVVDSLQGKTKADEELLSLFKEKEIPFLIAYNKWDL 132

Query: 332 YST------------YTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                           TEE    +S+ T   ++EL  KI  ++  K
Sbjct: 133 LEKNESHGGQCTAEELTEENGITVSAETSYHIQELKEKIAGLVKEK 178


>gi|223933032|ref|ZP_03625026.1| GTP1/OBG protein [Streptococcus suis 89/1591]
 gi|302023801|ref|ZP_07249012.1| ribosomal biogenesis GTPase [Streptococcus suis 05HAS68]
 gi|330832828|ref|YP_004401653.1| GTP1/OBG protein [Streptococcus suis ST3]
 gi|223898349|gb|EEF64716.1| GTP1/OBG protein [Streptococcus suis 89/1591]
 gi|329307051|gb|AEB81467.1| GTP1/OBG protein [Streptococcus suis ST3]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 7/65 (10%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKIS 272
           I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I 
Sbjct: 117 IQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----IL 171

Query: 273 DTAGI 277
           DT GI
Sbjct: 172 DTPGI 176


>gi|324994472|gb|EGC26385.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK678]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|322516897|ref|ZP_08069795.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           vestibularis ATCC 49124]
 gi|322124553|gb|EFX96032.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           vestibularis ATCC 49124]
          Length = 277

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 116 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 169


>gi|292669776|ref|ZP_06603202.1| GTP-binding protein Era [Selenomonas noxia ATCC 43541]
 gi|292648573|gb|EFF66545.1| GTP-binding protein Era [Selenomonas noxia ATCC 43541]
          Length = 297

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+  VI G  N GKS+L NAL  + +AI++D P TTR  +   L  E   +   DT G
Sbjct: 5   KSGFAAVI-GRPNVGKSTLINALIGQKIAIMSDKPQTTRSRILCILTEEDAQIIFLDTPG 63

Query: 277 I 277
           +
Sbjct: 64  V 64


>gi|170781619|ref|YP_001709951.1| putative GTP-binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156187|emb|CAQ01329.1| putative GTP-binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 521

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 28/200 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G++NAGKSSL N + K  V    A+   +  T R   T     +G L  ++DT G 
Sbjct: 301 VAIVGYTNAGKSSLLNRVTKAGVLVENALFATLDATVRKTETD----QGQLYTLADTVGF 356

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKN---IDFIFI 325
                    E  + T  E+ ++D+++ +          ++ +  E+    N   I  I +
Sbjct: 357 VRNLPHQLVEAFRSTLEELADSDVLVHVVDASHPDPGAQLATVHEVIAEVNASAIPEIVV 416

Query: 326 GTKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHK 377
             KSDL S                +S+ TGEG+EEL  +I  +L     ++   +P  H 
Sbjct: 417 FNKSDLASADDRVVLRGLAPQGVFVSARTGEGVEELRRRIAELLPQPTIEVDLLVPFEHG 476

Query: 378 RHLYHLSQTVRYLEMASLNE 397
             +  L    + LE + + E
Sbjct: 477 EVVAMLHDGAKVLETSYVEE 496


>gi|168334214|ref|ZP_02692417.1| ATP/GTP-binding protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 411

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 15/170 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G++NAGKS+L N L   D+ +   +  T        +   G  V+  DT G I++ 
Sbjct: 197 VSIVGYTNAGKSTLLNVLTGSDIYVEKQLFATLDTTTRKAILPSGTEVRFVDTVGFIKKL 256

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTK 328
              + K     T  EV  +D+I+ L + +++   S  +             I  + +  K
Sbjct: 257 PHQLIK-AFYSTLEEVRYSDIIIHLIDASNEHNESHIQVVEETLKNLKIEGIPVLKVYNK 315

Query: 329 SDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            D    Y EE ++L IS+ TG  L++L  KI+ IL ++ KK    +P  K
Sbjct: 316 VDNEQVYIEELENLTISAKTGLNLDKLQLKIEEILYDEMKKFTAVVPYTK 365


>gi|157371903|ref|YP_001479892.1| GTP-binding protein Era [Serratia proteamaculans 568]
 gi|157323667|gb|ABV42764.1| GTP-binding protein Era [Serratia proteamaculans 568]
          Length = 302

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 37/189 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  ++ ID D   Y     DT G+   
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTD-GAYQAIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I EK  I R             L    +   I   + + F+  GT       +T + +
Sbjct: 68  --IEEKRAINR-------------LMNRAASSSIGDVELVIFVVEGT------NWTADDE 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++         L  INK+ ++ ++K K LP        H+  LSQ + +L++  ++ E
Sbjct: 107 MVVNKLRSLKCPVLLAINKVDNV-TDKSKLLP--------HIAFLSQQMNFLDVVPISAE 157

Query: 398 KDCGLDIIA 406
           K   +D IA
Sbjct: 158 KGMNVDTIA 166


>gi|134299122|ref|YP_001112618.1| HSR1-like GTP-binding protein [Desulfotomaculum reducens MI-1]
 gi|134051822|gb|ABO49793.1| GTP-binding protein, HSR1-related protein [Desulfotomaculum
           reducens MI-1]
          Length = 421

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 25/218 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           + ++G++NAGKS+L  +L   D+ +V D    T D  T  + L     V ++DT G  + 
Sbjct: 204 VSLVGYTNAGKSTLLKSLTGADI-LVEDKLFATLDPTTRRISLPNNDNVLLTDTVGFIQN 262

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPKNI---------DFIFIGTK 328
                    + T  EV+ +DL+L + +    N + +I   + +           I +  K
Sbjct: 263 LPHHLVAAFRATLEEVQESDLLLHIVDASHPNYEGQIRAVETVLESLHVLDKPSIMVFNK 322

Query: 329 SDLYS-----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
            D+        +TE     IS+ +GEG ++L++ I  +L  ++  L  ++P  K +L   
Sbjct: 323 IDMVKDVQEIPFTENPRVYISATSGEGSDQLLDMIAGVLKERYSILKLTVPYDKTNLI-- 380

Query: 384 SQTVRYLEMASLNEKDC--GLDIIAENLRLASVSLGKI 419
             ++ + +   LNEK    G++I AE   + +  + KI
Sbjct: 381 --SILHQKGKVLNEKYTPEGIEIKAEISNIWAARIRKI 416


>gi|116627721|ref|YP_820340.1| ribosomal biogenesis GTPase [Streptococcus thermophilus LMD-9]
 gi|116100998|gb|ABJ66144.1| Predicted GTPase [Streptococcus thermophilus LMD-9]
          Length = 284

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|313675799|ref|YP_004053795.1| GTP-binding protein era [Marivirga tractuosa DSM 4126]
 gi|312942497|gb|ADR21687.1| GTP-binding protein Era [Marivirga tractuosa DSM 4126]
          Length = 294

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + ++I+T    TTR  +   L    + +  SDT GI    
Sbjct: 11  VSIVGKPNVGKSTLMNALVGERLSIITSKAQTTRHRIMGILSGADFQIVYSDTPGILSPQ 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
             +    ++     +E+AD++L + ++  K E
Sbjct: 71  YELHNSMMRFVKAALEDADIMLFVTDLYEKYE 102


>gi|312278269|gb|ADQ62926.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
           thermophilus ND03]
          Length = 284

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|311741366|ref|ZP_07715190.1| GTP-binding protein Era [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311303536|gb|EFQ79615.1| GTP-binding protein Era [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 345

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  E   V + D
Sbjct: 45  EGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHTIRGLVHREDAQVIVVD 103

Query: 274 TAGIRETDDIVEK---EGIKRTFLEVE 297
           T G+     ++ +   E +K T+ +V+
Sbjct: 104 TPGLHRPRTLLGERLNEVVKDTYADVD 130


>gi|282600806|ref|ZP_05979765.2| GTP-binding protein Era [Subdoligranulum variabile DSM 15176]
 gi|282570996|gb|EFB76531.1| GTP-binding protein Era [Subdoligranulum variabile DSM 15176]
          Length = 296

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N L  + VAIVT  P TTR  +T  +        + DT GI +  
Sbjct: 7   VALVGRPNVGKSSLTNYLVGEKVAIVTKKPQTTRSRITGVITKGPVQYVLMDTPGIHKAH 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
           + ++    +     +++ D+ ++L E
Sbjct: 67  NKLDARMTQTAAASLKDVDVTMMLFE 92


>gi|163814604|ref|ZP_02205993.1| hypothetical protein COPEUT_00755 [Coprococcus eutactus ATCC 27759]
 gi|158450239|gb|EDP27234.1| hypothetical protein COPEUT_00755 [Coprococcus eutactus ATCC 27759]
          Length = 469

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKSSL NA+  + +A+V+D+ GTT D +   ++L     V I DT G
Sbjct: 33  NRVHIGFFGCRNAGKSSLVNAVTGQSLAVVSDVAGTTTDPVYKSMELLPLGPVVIVDTPG 92

Query: 277 IRETDDIVE 285
           I +   + E
Sbjct: 93  IDDAGSLGE 101


>gi|146318651|ref|YP_001198363.1| ribosomal biogenesis GTPase [Streptococcus suis 05ZYH33]
 gi|146320857|ref|YP_001200568.1| ribosomal biogenesis GTPase [Streptococcus suis 98HAH33]
 gi|253751770|ref|YP_003024911.1| GTPase protein [Streptococcus suis SC84]
 gi|253753594|ref|YP_003026735.1| GTPase protein [Streptococcus suis P1/7]
 gi|253755525|ref|YP_003028665.1| GTPase protein [Streptococcus suis BM407]
 gi|145689457|gb|ABP89963.1| Predicted GTPase [Streptococcus suis 05ZYH33]
 gi|145691663|gb|ABP92168.1| Predicted GTPase [Streptococcus suis 98HAH33]
 gi|251816059|emb|CAZ51679.1| putative GTPase protein [Streptococcus suis SC84]
 gi|251817989|emb|CAZ55771.1| putative GTPase protein [Streptococcus suis BM407]
 gi|251819840|emb|CAR45821.1| putative GTPase protein [Streptococcus suis P1/7]
 gi|292558338|gb|ADE31339.1| GTP-binding protein [Streptococcus suis GZ1]
 gi|319758119|gb|ADV70061.1| ribosomal biogenesis GTPase [Streptococcus suis JS14]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|55820933|ref|YP_139375.1| ribosomal biogenesis GTPase [Streptococcus thermophilus LMG 18311]
 gi|55822855|ref|YP_141296.1| ribosomal biogenesis GTPase [Streptococcus thermophilus CNRZ1066]
 gi|55736918|gb|AAV60560.1| GTP-binding protein [Streptococcus thermophilus LMG 18311]
 gi|55738840|gb|AAV62481.1| GTP-binding protein [Streptococcus thermophilus CNRZ1066]
          Length = 284

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|302386875|ref|YP_003822697.1| GTP-binding proten HflX [Clostridium saccharolyticum WM1]
 gi|302197503|gb|ADL05074.1| GTP-binding proten HflX [Clostridium saccharolyticum WM1]
          Length = 423

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 28/165 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAG-IRETD 281
           I+G++NAGKS+L N L    + +  D    T D  T +L L G   + ++DT G IR+  
Sbjct: 206 IVGYTNAGKSTLLNRLTDAGI-LAEDKLFATLDPTTRNLSLPGGQQILLTDTVGFIRKLP 264

Query: 282 DIVEKEGIKRTFLEVENADLIL-------------------LLKE--INSKKEISFPKNI 320
             +  E  K T  E + +D+IL                    L+E  I  K  I+    I
Sbjct: 265 HHL-IEAFKSTLEEAKYSDIILHVVDCSNPQMDMQMYVVYETLRELGICDKIMITVFNKI 323

Query: 321 DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           D    G    +    + ++   IS+ TGEGL+ELIN +++IL N+
Sbjct: 324 DAADAGV---ILRDVSSDHQVRISAKTGEGLDELINLLETILRNQ 365


>gi|300853996|ref|YP_003778980.1| putative ras-like GTP-binding protein [Clostridium ljungdahlii DSM
           13528]
 gi|300434111|gb|ADK13878.1| predicted ras-like GTP-binding protein [Clostridium ljungdahlii DSM
           13528]
          Length = 293

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ I I+G  N GKS+L N +  + ++IV+  P TTR+ +   L  + + +   DT
Sbjct: 1   MFKSGF-ITIIGRPNVGKSTLLNNIMGEKLSIVSCRPQTTRNSIQTILTEDDFQLVFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    +    +K     +++ DL+L L
Sbjct: 60  PGIHKPKHKLGDYMVKAAEDSIKDVDLVLFL 90


>gi|71754451|ref|XP_828140.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70833526|gb|EAN79028.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|261333930|emb|CBH16924.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 382

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 10/118 (8%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKI--VILGHSNAGKSSLFNALAKKDVAIVTDI 250
           LND    +++  SHI+Q    +   + +K+  VI+G  N+GK+SL NAL+   +  V++ 
Sbjct: 68  LND----ESNSGSHINQQSTLQQPPDAHKLRAVIVGTQNSGKTSLLNALSLSHIGAVSNR 123

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGI----RETDDIVEKEGIKRTFLEVENADLILL 304
            G TR+       +    + + DT GI     E D       + RT+      DL++L
Sbjct: 124 SGVTREWTRGVATVHNTQLVLLDTPGIVICNGEKDRRRHAAPVARTWDAFTVTDLVML 181


>gi|71027325|ref|XP_763306.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350259|gb|EAN31023.1| hypothetical protein TP03_0288 [Theileria parva]
          Length = 700

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 222 IVILGHSNAGKSSLFNA-LAKKDVA------IVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G SN GKS LFN+ LA+   A      IV++ PGTTRD       L+G  + + DT
Sbjct: 3   VSLIGRSNVGKSRLFNSILAQAGKASNILKSIVSEKPGTTRDSKQAQFYLKGNKITLVDT 62

Query: 275 AG 276
            G
Sbjct: 63  GG 64


>gi|269216965|ref|ZP_06160819.1| GTP-binding protein [Slackia exigua ATCC 700122]
 gi|269129772|gb|EEZ60856.1| GTP-binding protein [Slackia exigua ATCC 700122]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKI 271
           GE I  G+     G  NAGKSSL NA+  +D+A+V+++ GTT D +   ++L     V I
Sbjct: 9   GERIHIGF----FGACNAGKSSLVNAVVGQDLAVVSEVAGTTTDPVRKAMELAPLGPVLI 64

Query: 272 SDTAGI 277
            DT G+
Sbjct: 65  IDTPGM 70


>gi|254524023|ref|ZP_05136078.1| GTP-binding protein Era [Stenotrophomonas sp. SKA14]
 gi|219721614|gb|EED40139.1| GTP-binding protein Era [Stenotrophomonas sp. SKA14]
          Length = 287

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L NAL    V+IV++ P TTR  +L I    EG LV + DT G+ + 
Sbjct: 1   MAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATYPEGQLV-LVDTPGLHK- 58

Query: 281 DDIVEKEGIKRTF 293
              V+K  + R  
Sbjct: 59  ---VQKRAMNRVM 68


>gi|154686156|ref|YP_001421317.1| YnbA [Bacillus amyloliquefaciens FZB42]
 gi|154352007|gb|ABS74086.1| YnbA [Bacillus amyloliquefaciens FZB42]
          Length = 420

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +NG  +  ++G++NAGKS+ FN L   D +   D+   T D +T  + L  GY V +SDT
Sbjct: 197 KNGVLQAALVGYTNAGKSTWFNQLTSSD-SYEEDLLFATLDPMTRKMALPSGYSVLLSDT 255

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          + T  EV+ ADLI+
Sbjct: 256 VGFIQDLPTTLIAAFRSTLEEVKEADLII 284


>gi|94987086|ref|YP_595019.1| GTP-binding protein Era [Lawsonia intracellularis PHE/MN1-00]
 gi|94731335|emb|CAJ54698.1| GTPase [Lawsonia intracellularis PHE/MN1-00]
          Length = 324

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N    + VAIVT  P TTR+ +   L  +   V   DT G
Sbjct: 17  RCGW-VALIGPPNAGKSTLTNTFVGQKVAIVTSKPQTTRNKIGGILTQDDMQVIFLDTPG 75

Query: 277 I 277
           I
Sbjct: 76  I 76


>gi|256831481|ref|YP_003160208.1| GTPase EngC [Jonesia denitrificans DSM 20603]
 gi|256685012|gb|ACV07905.1| GTPase EngC [Jonesia denitrificans DSM 20603]
          Length = 341

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 13/90 (14%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG--------TTRDVLTIDLD 263
           L  +I  G   ++LG S AGKSSL NALA   V    ++ G        T R+++TI   
Sbjct: 168 LAGLISPGDTFILLGPSGAGKSSLVNALAGAPVLATGEVRGDGRGRHTTTRRELITI--- 224

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
            EG L  + DT G+R      ++ G++ TF
Sbjct: 225 -EG-LGSLIDTPGLRSVGMTAQEAGLEATF 252


>gi|238809710|dbj|BAH69500.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 195

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 9/60 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR---------DVLTIDLDLEGY 267
           +N +++   G SN GKSSL NA+  ++++ V+  PG T+         D   +DL   GY
Sbjct: 19  KNSFQVCFWGRSNVGKSSLLNAITNQNISFVSKHPGRTQLINYFADNNDKYIVDLPGYGY 78


>gi|114569999|ref|YP_756679.1| small GTP-binding protein [Maricaulis maris MCS10]
 gi|114340461|gb|ABI65741.1| GTP-binding protein HflX [Maricaulis maris MCS10]
          Length = 450

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 35/188 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN L    V    D+P  T D     +DL  G  + +SDT G   T
Sbjct: 203 VALVGYTNAGKSTLFNKLTGAGV-FAQDMPFATLDPTVRAVDLPGGTRILLSDTVGF-IT 260

Query: 281 DDIVEK-EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--------------- 324
           D   E     + T  EV  ADL++ + + +        ++++ +                
Sbjct: 261 DLPTELIAAFRATLEEVREADLLVHIIDASDPDREGRIQDVESVLDAIEAGPAHDQAMLE 320

Query: 325 IGTKSDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKK 368
              KSD     + E                    +S+ TG+G++ LI+ I+  LS++ ++
Sbjct: 321 AWNKSDRLDDESTEDLAITIQMANLKAGKPVKLAVSAVTGQGVDSLIDAIERTLSSENER 380

Query: 369 LPFSIPSH 376
           L   +P  
Sbjct: 381 LQIIVPPQ 388


>gi|325694492|gb|EGD36401.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK150]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|297171214|gb|ADI22222.1| GTPase [uncultured Gemmatimonadales bacterium HF0200_34B24]
 gi|297171330|gb|ADI22335.1| GTPase [uncultured actinobacterium HF0500_01C15]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 28/189 (14%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEG 266
           + G      R GY + ++G  NAGKS+L N    + ++IVT    TT   +T I      
Sbjct: 3   TDGPSQSTTRAGY-VALVGRPNAGKSTLLNRFVGEHLSIVTSKAQTTWQRVTGIRTKGTD 61

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------E 313
            L+ + DT G+ ET D+++   +      +  AD+ LL+ +   +              E
Sbjct: 62  QLIFL-DTPGLLETRDLLQHAMLGAALEALAEADVALLVVDTTRRPTQTDTDRILAAFSE 120

Query: 314 ISFPKNIDFIFIGTKS----DLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNK 365
           I  P +I    +   +    + + +++EE      H +S+ TG+G++ L+N    ++   
Sbjct: 121 IHRPLHIVLNKLDQANLSSIEAWKSWSEEGLSGQVHSVSAKTGKGVDSLLN----VICED 176

Query: 366 FKKLPFSIP 374
             + PF  P
Sbjct: 177 LPEGPFLYP 185


>gi|206901698|ref|YP_002251036.1| GTP-binding protein Era [Dictyoglomus thermophilum H-6-12]
 gi|206740801|gb|ACI19859.1| GTP-binding protein Era [Dictyoglomus thermophilum H-6-12]
          Length = 297

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKS+L N L  + V+IV D P TTR  +   L LE       DT G     
Sbjct: 9   IGIVGKPNAGKSTLINLLVGEKVSIVADKPQTTRQRILGVLTLEDAQFIFLDTPGWFPPK 68

Query: 282 DIV---EKEGIKRTFLEVENADLIL 303
            ++    ++ IK+T   +E++D++L
Sbjct: 69  HLLGEYMQKTIKKT---IEDSDIVL 90


>gi|154248821|ref|YP_001409646.1| GTP-binding protein HSR1-related [Fervidobacterium nodosum Rt17-B1]
 gi|154152757|gb|ABS59989.1| GTP-binding protein HSR1-related [Fervidobacterium nodosum Rt17-B1]
          Length = 421

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 64/106 (60%), Gaps = 7/106 (6%)

Query: 216 IRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISD 273
           + +GY I  ++G++NAGKS+L +AL+K++  I++D   +T +     + L +G  V +SD
Sbjct: 191 LESGYYIFSVVGYTNAGKSTLLSALSKEEDIIISDKMFSTLNPTVRRIKLPDGRFVLLSD 250

Query: 274 TAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEIS 315
           T G IR+    +  E    T  E+  +D+I++L ++   N KK++S
Sbjct: 251 TVGFIRKLPHTL-VEAFHSTLEEILYSDVIIILVDVSDTNYKKKLS 295


>gi|70726604|ref|YP_253518.1| hypothetical protein SH1603 [Staphylococcus haemolyticus JCSC1435]
 gi|68447328|dbj|BAE04912.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 412

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++I ++G++NAGKSS FN L+     +KD+   T  P T +    I ++ EG+ + ISDT
Sbjct: 206 FQIALVGYTNAGKSSWFNVLSGEETFEKDLLFATLDPKTRQ----IQIN-EGFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL+L
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEAKGADLLL 289


>gi|327489684|gb|EGF21475.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK1058]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|315222440|ref|ZP_07864341.1| ribosome biogenesis GTPase YqeH [Streptococcus anginosus F0211]
 gi|315188464|gb|EFU22178.1| ribosome biogenesis GTPase YqeH [Streptococcus anginosus F0211]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 41/170 (24%)

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
           +S   QW+ +  H       D+  +  ++ Q  + KE++  I                 E
Sbjct: 118 TSKVAQWLTERAHEEGLRPVDVVLTSAQNKQ--AIKELIEKI-----------------E 158

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
             R G  + ++G +N GKS+L NA+ +     K++   +  PGTT D + I L       
Sbjct: 159 QYRKGRDVYVVGVTNVGKSTLINAIIQEITGDKEIITTSRFPGTTLDKIEIPL------- 211

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             +D + I +T  I+ +  +   +L  +N      LK I+ KKEI  PK 
Sbjct: 212 --ADGSHIYDTPGIIHRHQMAH-YLSAKN------LKYISPKKEIK-PKT 251


>gi|313633473|gb|EFS00297.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
           FSL N1-067]
 gi|313638163|gb|EFS03419.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
           FSL S4-171]
          Length = 287

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKV---GKTLELLDTPGI 175


>gi|220904473|ref|YP_002479785.1| ribosome biogenesis GTP-binding protein YsxC [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|254783193|sp|B8J030|ENGB_DESDA RecName: Full=Probable GTP-binding protein EngB
 gi|219868772|gb|ACL49107.1| GTP-binding protein HSR1-related [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 201

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDV 257
           +I + G SN GKSSL NALA +K +A V+  PG TR V
Sbjct: 24  QIALAGRSNVGKSSLVNALAGRKKLAKVSSTPGKTRSV 61


>gi|156381162|ref|XP_001632135.1| predicted protein [Nematostella vectensis]
 gi|156219186|gb|EDO40072.1| predicted protein [Nematostella vectensis]
          Length = 383

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N+GKS+L N L  + +  VT+ P TTR V        G  + + DT G+   
Sbjct: 82  KVAIIGEPNSGKSTLINQLVGEKIVAVTEKPHTTRQVSRGVFTSGGTQIILLDTPGLVTQ 141

Query: 281 DD----IVEKEGIKRTFLEVENADLILLLKEINSKK 312
            +     + +E IK     +++AD+I ++ + ++K+
Sbjct: 142 SEGKRLKMTREHIKAPGDALDDADIIGVICDASNKR 177


>gi|20806764|ref|NP_621935.1| ferrous ion uptake system protein FeoB ( GTPase)
           [Thermoanaerobacter tengcongensis MB4]
 gi|20515224|gb|AAM23539.1| Ferrous ion uptake system protein FeoB (predicted GTPase)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 656

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G++N GKS +FN L      I+ + PG T +     L  +G ++KI D  GI    
Sbjct: 7   VALAGNANVGKSVIFNQLTGMT-QIIGNWPGKTVERAEGTLRYKGRIIKIIDLPGIYSLS 65

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
              ++E + R F+  E  D+++
Sbjct: 66  AYSQEEIVSREFIAFEKPDVVI 87


>gi|305666362|ref|YP_003862649.1| putative GTP-binding protein [Maribacter sp. HTCC2170]
 gi|88708354|gb|EAR00591.1| putative GTP-binding protein [Maribacter sp. HTCC2170]
          Length = 296

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ + + V +SDT GI +    
Sbjct: 11  IIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGDDFQVILSDTPGIIKPAYE 70

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311
           ++   +       E+AD++L + EI  K
Sbjct: 71  LQSSMMDFVKSAFEDADVLLYMVEIGEK 98


>gi|326389350|ref|ZP_08210918.1| ferrous iron transport protein B [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994713|gb|EGD53137.1| ferrous iron transport protein B [Thermoanaerobacter ethanolicus JW
           200]
          Length = 656

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++N   I + G++N GKS +FN L      I+ + PG T +     L  +G  +KI D  
Sbjct: 1   MKNEIVIALAGNANVGKSVIFNQLTGLT-QIIGNWPGKTVERAEGVLRFKGRTIKIVDLP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303
           GI       ++E + R F+  E  D+++
Sbjct: 60  GIYSLSAYSQEEIVSREFIAFEKPDVVI 87


>gi|270265299|ref|ZP_06193560.1| GTP-binding protein [Serratia odorifera 4Rx13]
 gi|270040703|gb|EFA13806.1| GTP-binding protein [Serratia odorifera 4Rx13]
          Length = 302

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 37/189 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  ++ ID D   Y     DT G+   
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTD-GAYQAIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I EK  I R             L    +   I   + + F+  GT       +T + +
Sbjct: 68  --IEEKRAINR-------------LMNRAASSSIGDVELVIFVVEGT------NWTADDE 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++         L  INK+ ++ ++K K LP        H+  LSQ + +L++  ++ E
Sbjct: 107 MVVNKLRSLKCPVLLAINKVDNV-TDKSKLLP--------HIAFLSQQMNFLDVVPISAE 157

Query: 398 KDCGLDIIA 406
           K   +D IA
Sbjct: 158 KGMNVDTIA 166


>gi|224826455|ref|ZP_03699557.1| GTP-binding proten HflX [Lutiella nitroferrum 2002]
 gi|224601556|gb|EEG07737.1| GTP-binding proten HflX [Lutiella nitroferrum 2002]
          Length = 378

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 29/187 (15%)

Query: 216 IRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISD 273
           +RNG   V I+G++NAGKS+LFNAL K   +   D    T D  +  L L E   + +SD
Sbjct: 193 LRNGIASVSIVGYTNAGKSTLFNALTKAK-SYAADQLFATLDTTSRKLYLNEQASIVVSD 251

Query: 274 TAG-IRETDDIVEKEGIKRTFLEVENADLIL------------LLKEINSKKEISFPKNI 320
           T G IR+    +     + T  E   ADL+L             ++E+N   E      I
Sbjct: 252 TVGFIRDLPHTL-VAAFRATLEETVQADLLLHVVDSANPMRDMQIEEVNRVLEEIGADEI 310

Query: 321 DFIFIGTKSDLYS---TYTEEYDHL-----ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             + +  K DL         + D +     +S+ TG+GLE L    +  L+ + + L   
Sbjct: 311 PQLIVWNKGDLRGLEPLIERDADGVPQAVRVSALTGDGLELL----REALAERVQLLAPP 366

Query: 373 IPSHKRH 379
            PS  R+
Sbjct: 367 HPSEDRN 373


>gi|254433531|ref|ZP_05047039.1| GTP-binding protein Era [Nitrosococcus oceani AFC27]
 gi|207089864|gb|EDZ67135.1| GTP-binding protein Era [Nitrosococcus oceani AFC27]
          Length = 303

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR GY I I+G  N GKSSL N +  + ++I +  P TTR  +     L G      DT 
Sbjct: 10  IRCGY-IAIIGRPNVGKSSLLNRILGQKISITSRRPQTTRHRILGIKTLAGIQAIYVDTP 68

Query: 276 GIRETDDIVEKEGIKRTF-LEVENADLILLLKE 307
           G ++ +  +    + R     +E  DLIL + E
Sbjct: 69  GFQDKERRLMNRYLNRAIDSTLEEVDLILFVIE 101


>gi|160878804|ref|YP_001557772.1| GTP-binding protein Era [Clostridium phytofermentans ISDg]
 gi|160427470|gb|ABX41033.1| GTP-binding protein Era [Clostridium phytofermentans ISDg]
          Length = 305

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRETDD 282
           ++G  N GKS+L N L  + +AI +D P TTR+ + T+  + +G ++ + DT GI +  +
Sbjct: 15  LIGRPNVGKSTLMNQLIGQKIAITSDKPQTTRNRIQTVYTEEQGQIIFL-DTPGIHQAKN 73

Query: 283 IVEKEGIKRTFLEVENADLILLLKE 307
            + +  +      +   D+IL L E
Sbjct: 74  KLGQFMVNIAERTINEVDVILWLVE 98


>gi|332686084|ref|YP_004455858.1| GTP-binding protein YqeH [Melissococcus plutonius ATCC 35311]
 gi|332370093|dbj|BAK21049.1| GTP-binding protein YqeH, required for biogenesis of 30S ribosome
           subunit [Melissococcus plutonius ATCC 35311]
          Length = 369

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  RNG  + I+G +N GKS+L N + K+     +V   +  PGTT D + I L    +L
Sbjct: 159 EYYRNGRDVYIVGVTNVGKSTLINQIIKQTSGEEEVITTSQFPGTTLDKIKIPLADGQFL 218

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 219 I---DTPGI 224


>gi|291546834|emb|CBL19942.1| GTP-binding protein Era [Ruminococcus sp. SR1/5]
          Length = 302

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R+G+ + I+G  N GKS+L N L  + +AI ++ P TTR+ + T+    EG +V + DT 
Sbjct: 6   RSGF-VAIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNKIQTVYTCDEGQIVFL-DTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           GI +  + + +  ++     ++  D I+ L E
Sbjct: 64  GIHKAKNKLGEYMVQVAERTLKEVDAIMWLVE 95


>gi|289434556|ref|YP_003464428.1| HSR1-related GTPase family protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289170800|emb|CBH27342.1| HSR1-related GTPase family protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 287

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKV---GKTLELLDTPGI 175


>gi|213618630|ref|ZP_03372456.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 56

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 26/38 (68%)

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 19  ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 56


>gi|86149997|ref|ZP_01068225.1| FeoB [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85839443|gb|EAQ56704.1| FeoB [Campylobacter jejuni subsp. jejuni CF93-6]
          Length = 289

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL K ++  V +  G T +  +     + Y  ++ D  G    
Sbjct: 5   KIALVGQPNVGKSLLINALCKANMK-VGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D   E+E I R FL   + D+I+
Sbjct: 64  DGYSEEEKITRHFLNQNDYDVIV 86


>gi|332670096|ref|YP_004453104.1| GTP-binding proten HflX [Cellulomonas fimi ATCC 484]
 gi|332339134|gb|AEE45717.1| GTP-binding proten HflX [Cellulomonas fimi ATCC 484]
          Length = 506

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 28/177 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L    V    A+   +  T R   T D    G +  ++DT G 
Sbjct: 287 VAIAGYTNAGKSSLLNRLTNAGVLVENALFATLDPTVRRAETTD----GRVYTLADTVGF 342

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI--SFPKNIDF--IF 324
                    E  + T  EV +ADL+L +          +I + + +    P  +D   I 
Sbjct: 343 VRALPHQLVEAFRSTLEEVADADLLLHVVDASHPDPEGQIAAVRHVFADIPGAMDVPEII 402

Query: 325 IGTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +  K+D  S          E +  ++S+ TGEG+ EL   I   L      +   +P
Sbjct: 403 VLNKADRASAEAIARLRSREVHSVVVSAHTGEGIAELQALIADQLPRPGVAVDVVVP 459


>gi|328946297|gb|EGG40441.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK1087]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|325972144|ref|YP_004248335.1| GTP-binding protein Era-like-protein [Spirochaeta sp. Buddy]
 gi|324027382|gb|ADY14141.1| GTP-binding protein Era-like-protein [Spirochaeta sp. Buddy]
          Length = 293

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280
           + I+G  +AGKS+L N + +  V+I    P TTR+ +  I  D  G L+  +DT G   +
Sbjct: 6   VAIIGRPSAGKSTLLNTICEMKVSITASTPQTTRNAIRGIYTDARGQLI-FTDTPGFHLS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           +  + K         +E +D +L +  I+SK+
Sbjct: 65  EKTLNKRLQDTALKSLEESDAVLYI--IDSKR 94


>gi|322492573|emb|CBZ27850.1| GTP-binding protein-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 497

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G +N+GK+SL N L   +     D   TTRD + I    +G  +K+ DTAG+   
Sbjct: 230 RVAIVGRTNSGKTSLVNRLVGYERNRAADESNTTRDPIEIACTYKGRKLKLIDTAGLARQ 289

Query: 281 DDIVEKEGIKR 291
               ++E + R
Sbjct: 290 RYRTDREFLSR 300



 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 15/96 (15%)

Query: 221 KIVILGHSNAGKSSLFNAL-------AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           ++ I+G  N+GKSSLFN L       AKK  +IV D  G TRD +     L+     + D
Sbjct: 30  RVAIVGRMNSGKSSLFNLLCQDPTMPAKK--SIVKDFNGITRDCVEAHAVLDDLHFTVID 87

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           T G      +V  + ++  F  VE AD  + +  ++
Sbjct: 88  TPG------LVGGKLVEEAFRTVETADAAIFVTAVD 117


>gi|309388936|gb|ADO76816.1| GTP-binding protein Era [Halanaerobium praevalens DSM 2228]
          Length = 293

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + + I++  P TTR+ +  I  + EG ++ I DT GI E 
Sbjct: 8   VTVIGRPNVGKSTLVNTLIGEKINIISPRPQTTRNSIKAIYTEAEGQIIFI-DTPGIHEA 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            + ++K      +  ++  D+I+ +
Sbjct: 67  RNELDKYMQGEAYNSLDGIDIIIFI 91


>gi|289705005|ref|ZP_06501418.1| GTP-binding protein Era [Micrococcus luteus SK58]
 gi|289558264|gb|EFD51542.1| GTP-binding protein Era [Micrococcus luteus SK58]
          Length = 321

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L NAL  + VAI +  P TTR  +   +  E + + + DT G
Sbjct: 15  RSGF-VSLVGRPNAGKSTLTNALVGEKVAITSSKPQTTRHTIRGIVHREDFQLVLVDTPG 73

Query: 277 I 277
           +
Sbjct: 74  L 74


>gi|332360460|gb|EGJ38271.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK355]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 12/83 (14%)

Query: 202 DISSHISQGKLGEIIRNGYKI-----VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR- 255
           D +  +   KL      G +I     +I+G  NAGKS+L N LA K +A+V + PG T+ 
Sbjct: 99  DAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKG 158

Query: 256 -DVLTIDLDLEGYLVKISDTAGI 277
              L  + DLE     I DT GI
Sbjct: 159 QQWLKSNKDLE-----ILDTPGI 176


>gi|319649583|ref|ZP_08003739.1| GTPase [Bacillus sp. 2_A_57_CT2]
 gi|317398745|gb|EFV79427.1| GTPase [Bacillus sp. 2_A_57_CT2]
          Length = 290

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNAGKSTLINRLAKKNIARTGNTPGVTKAQQWIKV---GKELELLDTPGI 175


>gi|315302907|ref|ZP_07873643.1| ribosome biogenesis GTP-binding protein YlqF [Listeria ivanovii FSL
           F6-596]
 gi|313628721|gb|EFR97118.1| ribosome biogenesis GTP-binding protein YlqF [Listeria ivanovii FSL
           F6-596]
          Length = 287

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKV---GKTLELLDTPGI 175


>gi|308189736|ref|YP_003922667.1| GTP-binding protein [Mycoplasma fermentans JER]
 gi|307624478|gb|ADN68783.1| GTP-binding protein [Mycoplasma fermentans JER]
          Length = 194

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 9/60 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR---------DVLTIDLDLEGY 267
           +N +++   G SN GKSSL NA+  ++++ V+  PG T+         D   +DL   GY
Sbjct: 18  KNSFQVCFWGRSNVGKSSLLNAITNQNISFVSKHPGRTQLINYFADNNDKYIVDLPGYGY 77


>gi|289450320|ref|YP_003475210.1| ribosome biogenesis GTP-binding protein YsxC [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184867|gb|ADC91292.1| ribosome biogenesis GTP-binding protein YsxC [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 217

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           ++V+ G SNAGKSSL NALA    +A V+  PG T+ V+  ++D + YL  +
Sbjct: 46  EVVMAGRSNAGKSSLINALANNGKLARVSSNPGKTQLVVYFNVDQKFYLTDL 97


>gi|269122927|ref|YP_003305504.1| GTP-binding protein Era [Streptobacillus moniliformis DSM 12112]
 gi|268314253|gb|ACZ00627.1| GTP-binding protein Era [Streptobacillus moniliformis DSM 12112]
          Length = 299

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I I+G  N GKS+L N L  + VAIV+D  GTTRD
Sbjct: 6   ISIVGRPNTGKSTLINKLIDEKVAIVSDKAGTTRD 40


>gi|206969713|ref|ZP_03230667.1| GTPase family protein [Bacillus cereus AH1134]
 gi|218233536|ref|YP_002369145.1| GTP-binding protein YqeH [Bacillus cereus B4264]
 gi|228954622|ref|ZP_04116646.1| hypothetical protein bthur0006_39910 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228960605|ref|ZP_04122252.1| hypothetical protein bthur0005_40690 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229048042|ref|ZP_04193617.1| hypothetical protein bcere0027_40160 [Bacillus cereus AH676]
 gi|229071842|ref|ZP_04205055.1| hypothetical protein bcere0025_40110 [Bacillus cereus F65185]
 gi|229081599|ref|ZP_04214095.1| hypothetical protein bcere0023_42300 [Bacillus cereus Rock4-2]
 gi|229111809|ref|ZP_04241355.1| hypothetical protein bcere0018_40530 [Bacillus cereus Rock1-15]
 gi|229129616|ref|ZP_04258584.1| hypothetical protein bcere0015_40580 [Bacillus cereus BDRD-Cer4]
 gi|229146907|ref|ZP_04275271.1| hypothetical protein bcere0012_40460 [Bacillus cereus BDRD-ST24]
 gi|229152539|ref|ZP_04280729.1| hypothetical protein bcere0011_40750 [Bacillus cereus m1550]
 gi|229180613|ref|ZP_04307954.1| hypothetical protein bcere0005_39570 [Bacillus cereus 172560W]
 gi|229192548|ref|ZP_04319509.1| hypothetical protein bcere0002_41990 [Bacillus cereus ATCC 10876]
 gi|296504828|ref|YP_003666528.1| GTP-binding protein YqeH [Bacillus thuringiensis BMB171]
 gi|206735401|gb|EDZ52569.1| GTPase family protein [Bacillus cereus AH1134]
 gi|218161493|gb|ACK61485.1| GTPase family protein [Bacillus cereus B4264]
 gi|228590855|gb|EEK48713.1| hypothetical protein bcere0002_41990 [Bacillus cereus ATCC 10876]
 gi|228602856|gb|EEK60336.1| hypothetical protein bcere0005_39570 [Bacillus cereus 172560W]
 gi|228630905|gb|EEK87544.1| hypothetical protein bcere0011_40750 [Bacillus cereus m1550]
 gi|228636506|gb|EEK92972.1| hypothetical protein bcere0012_40460 [Bacillus cereus BDRD-ST24]
 gi|228653733|gb|EEL09603.1| hypothetical protein bcere0015_40580 [Bacillus cereus BDRD-Cer4]
 gi|228671565|gb|EEL26863.1| hypothetical protein bcere0018_40530 [Bacillus cereus Rock1-15]
 gi|228701705|gb|EEL54195.1| hypothetical protein bcere0023_42300 [Bacillus cereus Rock4-2]
 gi|228711272|gb|EEL63234.1| hypothetical protein bcere0025_40110 [Bacillus cereus F65185]
 gi|228723286|gb|EEL74656.1| hypothetical protein bcere0027_40160 [Bacillus cereus AH676]
 gi|228799084|gb|EEM46054.1| hypothetical protein bthur0005_40690 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228805068|gb|EEM51663.1| hypothetical protein bthur0006_39910 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|296325880|gb|ADH08808.1| GTP-binding protein YqeH [Bacillus thuringiensis BMB171]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 25/165 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R G  + ++G +N GKS+  N + K      ++V   +  PGTT D++ I LD E  
Sbjct: 155 EYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFIFI 325
           L    DT GI     +    G +   L     ++  ++ ++N ++ + F      D++  
Sbjct: 215 LY---DTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG 271

Query: 326 GTKS---------DLYSTYTEEYDHLISSFTGEGL-----EELIN 356
           G ++          ++ T  E+ D L  +  G+ L     EEL N
Sbjct: 272 GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPTPEELAN 316


>gi|148997805|ref|ZP_01825369.1| GTP-binding protein [Streptococcus pneumoniae SP11-BS70]
 gi|168575059|ref|ZP_02721022.1| GTP-binding protein [Streptococcus pneumoniae MLV-016]
 gi|307068375|ref|YP_003877341.1| putative GTPase [Streptococcus pneumoniae AP200]
 gi|147756304|gb|EDK63346.1| GTP-binding protein [Streptococcus pneumoniae SP11-BS70]
 gi|183578795|gb|EDT99323.1| GTP-binding protein [Streptococcus pneumoniae MLV-016]
 gi|306409912|gb|ADM85339.1| Predicted GTPase [Streptococcus pneumoniae AP200]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|91225489|ref|ZP_01260611.1| putative GTPase YlqF [Vibrio alginolyticus 12G01]
 gi|254229237|ref|ZP_04922656.1| GTPase of unknown function subfamily, putative [Vibrio sp. Ex25]
 gi|262395587|ref|YP_003287440.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio sp. Ex25]
 gi|269967447|ref|ZP_06181505.1| hypothetical protein VMC_29350 [Vibrio alginolyticus 40B]
 gi|91189852|gb|EAS76125.1| putative GTPase YlqF [Vibrio alginolyticus 12G01]
 gi|151938322|gb|EDN57161.1| GTPase of unknown function subfamily, putative [Vibrio sp. Ex25]
 gi|262339181|gb|ACY52975.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio sp. Ex25]
 gi|269827945|gb|EEZ82221.1| hypothetical protein VMC_29350 [Vibrio alginolyticus 40B]
          Length = 314

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 21/125 (16%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212
           EL+ L+ + +++  H+++     +  SE ++V           I+ L   ++ H  + ++
Sbjct: 69  ELTQLWIEHLEQEQHVKAMA---ITTSEPQEVHR---------IMELCRKLAPH--REEI 114

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G+ IR     +I+G  N GKS++ N LA + +A+  + P  TR    I+L   G  + +S
Sbjct: 115 GKNIRT----MIMGIPNVGKSTIINTLAGRTIAVTGNQPAVTRRQQRINLQ-NG--IVLS 167

Query: 273 DTAGI 277
           DT GI
Sbjct: 168 DTPGI 172


>gi|332366881|gb|EGJ44622.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK1059]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|332363929|gb|EGJ41708.1| GTP-binding protein [Streptococcus sanguinis SK355]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L      
Sbjct: 158 EHCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L   N      LK I+ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLSANN------LKYISPKKEIK-PKT 251


>gi|332361191|gb|EGJ38995.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK1056]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|317493706|ref|ZP_07952123.1| small GTP-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918033|gb|EFV39375.1| small GTP-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 290

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 34/60 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I G S AGKSSL NAL   +V+ V+D+   TRD L   L  + + + I D  G  E++
Sbjct: 39  IGIAGKSGAGKSSLCNALFSGEVSPVSDVLACTRDALRFRLKADKHSLMIIDLPGAGESE 98


>gi|307267059|ref|ZP_07548573.1| ferrous iron transport protein B [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917939|gb|EFN48199.1| ferrous iron transport protein B [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 656

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++N   I + G++N GKS +FN L      I+ + PG T +     L  +G  +KI D  
Sbjct: 1   MKNEIVIALAGNANVGKSVIFNQLTGLT-QIIGNWPGKTVERAEGVLRFKGRTIKIVDLP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303
           GI       ++E + R F+  E  D+++
Sbjct: 60  GIYSLSAYSQEEIVSREFIAFEKPDVVI 87


>gi|213857526|ref|ZP_03384497.1| tRNA modification GTPase TrmE [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
          Length = 71

 Score = 41.2 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 4  EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
          + +TI A +T      + I+R+SG    +V E +  K  P PR A    F   DG +LD+
Sbjct: 3  DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61

Query: 64 GLLIVFPSP 72
          G+ + FP P
Sbjct: 62 GIALWFPGP 70


>gi|163749348|ref|ZP_02156597.1| GTP-binding protein HflX [Shewanella benthica KT99]
 gi|161331067|gb|EDQ01993.1| GTP-binding protein HflX [Shewanella benthica KT99]
          Length = 430

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 94/228 (41%), Gaps = 36/228 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFN+L   +V     +  T    L   L+L    + ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNSLTVSEVYAADQLFATLDPTLR-KLELPDGAIILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFIG 326
             D+V     K T  E   ADL+L + + + +             KEI     I  + + 
Sbjct: 259 PHDLV--AAFKSTLQETREADLLLHIVDCHDENMGDNFEQVQLVLKEIG-ADEIPQLIVC 315

Query: 327 TKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            K DL        D+          +S+   +GL++L   I  I+     +L   IP+  
Sbjct: 316 NKIDLLEDVNPRIDYNDEGVPIRVWVSAQQQKGLDQLREAINDIVGRATLELTLRIPATA 375

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDII------AENLRLASVSLGKI 419
            H  +L Q  R   +      D G  I+      A+ LRL   S G +
Sbjct: 376 GH--YLGQFYRLDAIQQKEFDDLGCCILSVRLLEADWLRLVKQSQGDL 421


>gi|158266422|gb|ABW24770.1| ThdF [Proteus mirabilis]
          Length = 53

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           HL Q  + L  A   E      ++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 1   HLQQGYQQLVYAKSGE------LLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 53


>gi|90416482|ref|ZP_01224413.1| GTP-binding protein [marine gamma proteobacterium HTCC2207]
 gi|90331681|gb|EAS46909.1| GTP-binding protein [marine gamma proteobacterium HTCC2207]
          Length = 431

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 23/186 (12%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +    +QG+   +      + ++G++NAGKS+LFN L + DV +   +  T    +  ++
Sbjct: 184 VRKQRAQGRRARVRAEVPAVSLVGYTNAGKSTLFNNLTQADVFVANQLFATLDPTMRKLE 243

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEI 314
           +  +G +V  +DT G          +  + T  E  NA L+L +       +  N K+  
Sbjct: 244 VPEQGEVV-FADTVGFISHLPHRLVDAFRATLEEAANATLLLHVVDGAAEDRATNIKRVE 302

Query: 315 SFPKNIDF-----IFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKS 360
              K ID      + +  K DL   ++   D           +S+   EGL+ L+  +  
Sbjct: 303 EVLKEIDAHKLPTLMVYNKVDLLEDFSARIDRNAEGQPVAVWLSALKNEGLDLLLQAVAE 362

Query: 361 ILSNKF 366
            L  +F
Sbjct: 363 RLPGQF 368


>gi|77165915|ref|YP_344440.1| GTP-binding protein Era [Nitrosococcus oceani ATCC 19707]
 gi|76884229|gb|ABA58910.1| GTP-binding protein Era [Nitrosococcus oceani ATCC 19707]
          Length = 306

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR GY I I+G  N GKSSL N +  + ++I +  P TTR  +     L G      DT 
Sbjct: 13  IRCGY-IAIIGRPNVGKSSLLNRILGQKISITSRRPQTTRHRILGIKTLAGIQAIYVDTP 71

Query: 276 GIRETDDIVEKEGIKRTF-LEVENADLILLLKE 307
           G ++ +  +    + R     +E  DLIL + E
Sbjct: 72  GFQDKERRLMNRYLNRAIDSTLEEVDLILFVIE 104


>gi|324992891|gb|EGC24811.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK405]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|319408442|emb|CBI82097.1| GTP-binding protein HflX [Bartonella schoenbuchensis R1]
          Length = 453

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 36/179 (20%)

Query: 222 IVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G++NAGKS+LFN L+      KD+   T  P   + +L       G  + +SDT G
Sbjct: 220 VALVGYTNAGKSTLFNRLSDAGVLTKDMLFATLDPTLRKVILP-----HGQTIFLSDTVG 274

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI---------------D 321
                        + T  EV  ADLI+ +K+I+     +  +++                
Sbjct: 275 FISNLPTHLIAAFRATLEEVIEADLIIHVKDISDPDHRAQAQDVLEILSSLGVDIGNTDR 334

Query: 322 FIFIGTKSDLYSTYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFKKL 369
            + +  K+D+   +T                +IS+ TGEGL +L+  I+  LS + + +
Sbjct: 335 IVEVWNKADMLDEHTLNVLQTSARTLLNPALMISALTGEGLNQLLITIERRLSGEMQSV 393


>gi|291544277|emb|CBL17386.1| GTP-binding protein Era [Ruminococcus sp. 18P13]
          Length = 297

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G +NAGKSSL NAL  + +A V++ P TTR  +T    +    +   DT G+ +  
Sbjct: 7   VTIAGRTNAGKSSLLNALVGEKIASVSNKPQTTRTRITGIKTIGDTQLVFMDTPGLHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + + +  +      V + DL+L +
Sbjct: 67  NKLSEHMLNTVTESVVDIDLLLFM 90


>gi|224826040|ref|ZP_03699143.1| GTP-binding protein HSR1-related [Lutiella nitroferrum 2002]
 gi|224601677|gb|EEG07857.1| GTP-binding protein HSR1-related [Lutiella nitroferrum 2002]
          Length = 207

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           ++  +G SNAGKSS  N LA +  +A V+  PG T+ +   DL  E YLV +
Sbjct: 25  EVAFVGRSNAGKSSAINTLANRTRLAFVSKTPGRTQHINFFDLGEERYLVDL 76


>gi|220912237|ref|YP_002487546.1| GTP-binding proten HflX [Arthrobacter chlorophenolicus A6]
 gi|219859115|gb|ACL39457.1| GTP-binding proten HflX [Arthrobacter chlorophenolicus A6]
          Length = 553

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 41/186 (22%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L    V    A+   +  T R   T D    G    ++DT G 
Sbjct: 334 VAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTIRKAETSD----GLGYTLADTVGF 389

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPK 318
             +      E  + T  EV ++DLIL                   +  E++++K      
Sbjct: 390 VRSLPTQLVEAFRSTLEEVADSDLILHVVDASHPDPEGQIAAVRKVFGEVDARK------ 443

Query: 319 NIDFIFIGTKSDLYSTYT------EEYDH-LISSFTGEGLEELINKIKSILSNKFKKLPF 371
            I  I +  K+D    +        E  H ++S+ TGEG+ EL+  I   +     +L  
Sbjct: 444 -IPEIIVLNKADAADPFVVERLKQREPRHVVVSARTGEGIAELLKTISDSIPRPGVQLEL 502

Query: 372 SIPSHK 377
            IP ++
Sbjct: 503 LIPYNR 508


>gi|239917732|ref|YP_002957290.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665]
 gi|281413773|ref|ZP_06245515.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665]
 gi|239838939|gb|ACS30736.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665]
          Length = 321

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L NAL  + VAI +  P TTR  +   +  E + + + DT G
Sbjct: 15  RSGF-VSLVGRPNAGKSTLTNALVGEKVAITSSKPQTTRHTIRGIVHREDFQLVLVDTPG 73

Query: 277 I 277
           +
Sbjct: 74  L 74


>gi|168493658|ref|ZP_02717801.1| GTP-binding protein [Streptococcus pneumoniae CDC3059-06]
 gi|183576456|gb|EDT96984.1| GTP-binding protein [Streptococcus pneumoniae CDC3059-06]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|167630622|ref|YP_001681121.1| GTP-binding domain protein [Heliobacterium modesticaldum Ice1]
 gi|167593362|gb|ABZ85110.1| GTP-binding domain protein [Heliobacterium modesticaldum Ice1]
          Length = 550

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 39/197 (19%)

Query: 222 IVILGHSNAGKSSLFNAL------------AKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           I ++G++NAGKS+L N L            A +D    T  P T R  L  + D     V
Sbjct: 321 ISMVGYTNAGKSTLSNLLVSRFAPFGGTSPAGEDKLFATLDPTTRRIRLLAERD-----V 375

Query: 270 KISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IG 326
            +SDT G IR+    + +   + T  E+  ADL+L + + +    +   + ++ +   IG
Sbjct: 376 LLSDTVGFIRKLPHSLVR-AFRATLEEIVAADLLLHIVDASHPAAVEQMRTVEAVLAEIG 434

Query: 327 TKSDLYSTYTEEYDHL-----------------ISSFTGEGLEELINKIKSILSNKFKKL 369
                  T   + D L                 +S++TGEG++ L+ KI  +L +    +
Sbjct: 435 AGEKPILTVLNKIDRLQPGGIDALLRPPDPWVALSAYTGEGVDGLLEKIARLLPDDRVTI 494

Query: 370 PFSIP-SHKRHLYHLSQ 385
              IP    + ++HL Q
Sbjct: 495 DVLIPYDEGKQIHHLYQ 511


>gi|146093526|ref|XP_001466874.1| GTPase protein [Leishmania infantum JPCM5]
          Length = 708

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 9/85 (10%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           G+ GE  R    + ++G+ N GKSS+ NAL +K V  V ++PG T     ++L  +   +
Sbjct: 436 GETGE--RKAIVVGVIGYPNVGKSSIINALKRKHVVGVGNMPGFTTGNTEVELRSD---I 490

Query: 270 KISDTAGI----RETDDIVEKEGIK 290
           ++ D  G+     ++ D+V +  I+
Sbjct: 491 RVMDCPGVVSPGEDSGDVVLRNAIR 515


>gi|125718011|ref|YP_001035144.1| ribosomal biogenesis GTPase [Streptococcus sanguinis SK36]
 gi|125497928|gb|ABN44594.1| GTP-binding protein, putative [Streptococcus sanguinis SK36]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|42519246|ref|NP_965176.1| GTP-binding protein Era [Lactobacillus johnsonii NCC 533]
 gi|41583534|gb|AAS09142.1| GTP-binding protein era-like protein [Lactobacillus johnsonii NCC
           533]
 gi|329667244|gb|AEB93192.1| GTP-binding protein era protein [Lactobacillus johnsonii DPC 6026]
          Length = 303

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + VAI++  P TTR+ ++ I  D +  +V I DT GI + 
Sbjct: 13  VALIGRPNVGKSTLLNYLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFI-DTPGIHKP 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + ++    K ++  ++  D++L + E
Sbjct: 72  KNKLDDFMDKSSYSALDEVDVVLFMVE 98


>gi|15894577|ref|NP_347926.1| GTP-binding protein Era [Clostridium acetobutylicum ATCC 824]
 gi|21263597|sp|Q97JI5|ERA_CLOAB RecName: Full=GTPase Era
 gi|15024224|gb|AAK79266.1|AE007641_12 ERA GTPase [Clostridium acetobutylicum ATCC 824]
 gi|325508709|gb|ADZ20345.1| GTP-binding protein Era [Clostridium acetobutylicum EA 2018]
          Length = 296

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ + I+G  N GKS+L N +  + ++IV+  P TTR+ +   L  E Y +   DT
Sbjct: 1   MFKSGF-VTIIGRPNVGKSTLLNHIMGEKLSIVSSKPQTTRNNIQTILTGEEYQIVFVDT 59

Query: 275 AGI 277
            G+
Sbjct: 60  PGM 62


>gi|329117496|ref|ZP_08246213.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           parauberis NCFD 2020]
 gi|326907901|gb|EGE54815.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           parauberis NCFD 2020]
          Length = 284

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|323351560|ref|ZP_08087214.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis VMC66]
 gi|322122046|gb|EFX93772.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis VMC66]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|315612639|ref|ZP_07887551.1| ribosome biogenesis GTPase YqeH [Streptococcus sanguinis ATCC
           49296]
 gi|315315226|gb|EFU63266.1| ribosome biogenesis GTPase YqeH [Streptococcus sanguinis ATCC
           49296]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|283456413|ref|YP_003360977.1| hflX GTP-binding protein hflX [Bifidobacterium dentium Bd1]
 gi|283103047|gb|ADB10153.1| hflX GTP-binding protein hflX [Bifidobacterium dentium Bd1]
          Length = 482

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 30/210 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G++NAGKSSL N L      +   +  T    +      +G L    DT G     
Sbjct: 264 VAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRARAKDGRLYAYVDTVGFVRRL 323

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI--------SFPKNIDFIF 324
                E  K T  EV  ADLI+ +          +I++  ++        + P  + F  
Sbjct: 324 PTQLIEAFKSTLEEVAEADLIVHVVDGSHPDPFSQIDAVNDVLADIDGVGAIPTIVAF-- 381

Query: 325 IGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
              KSDL      E         +++S+++GEG++EL   I+S+L      +   +P   
Sbjct: 382 --NKSDLMGEAVRERIEALMPDAYVVSAYSGEGVDELRTGIESMLPTPNVHVEALLPYSA 439

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
             L  +S+   Y ++ ++  +D G+ + AE
Sbjct: 440 GSL--VSRVREYGKVLAVEYRDDGMMLRAE 467


>gi|119511840|ref|ZP_01630940.1| GTP-binding protein [Nodularia spumigena CCY9414]
 gi|119463482|gb|EAW44419.1| GTP-binding protein [Nodularia spumigena CCY9414]
          Length = 521

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 5/129 (3%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRD 256
           N + +H S+ +L    +    + ++G++NAGKS+L NAL   +V     +   +  TTR 
Sbjct: 329 NQLQAHRSRLRLRRQNQEVPSVALVGYTNAGKSTLLNALTNAEVYTADQLFATLDPTTRR 388

Query: 257 VLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           ++  D D  G   + ++DT G          +  + T  EV  AD +L L +++    +S
Sbjct: 389 LVIADGDTGGTQEILLTDTVGFIHELPASLMDAFRATLEEVTEADALLHLVDLSHPAWLS 448

Query: 316 FPKNIDFIF 324
             +++  I 
Sbjct: 449 HIRSVREIL 457


>gi|160872884|ref|ZP_02063016.1| GTP-binding protein Era [Rickettsiella grylli]
 gi|159121683|gb|EDP47021.1| GTP-binding protein Era [Rickettsiella grylli]
          Length = 294

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGI 277
           KI I+G  N GKS+L N +  + + I +  P TTRD +L I  DL    +   DT GI
Sbjct: 10  KIAIIGRPNVGKSTLLNKILGEKLTITSSKPQTTRDQILGIKTDLHTQFI-YKDTPGI 66


>gi|16332102|ref|NP_442830.1| hypothetical protein slr1428 [Synechocystis sp. PCC 6803]
 gi|1653731|dbj|BAA18642.1| slr1428 [Synechocystis sp. PCC 6803]
          Length = 636

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 9/119 (7%)

Query: 207 ISQGK-LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           ++QG+   E+ +    ++++G + AGKSSL NAL + ++A+   +P TT          +
Sbjct: 283 LAQGQSPQEVEQQPVNVLLVGRTGAGKSSLINALFQTNLAVTDLLPSTTEITKYEWRTRD 342

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLE-VENADLILLLKEINSKKEISFPKNIDFI 323
           G ++ + D+ G  +     +++ +++  L+  + AD+ILLL   N   + +   + DF+
Sbjct: 343 GEMLMLWDSPGYEQG----QRKDLRQLVLDYAQRADVILLL---NPALDPALQMDADFV 394


>gi|13959677|sp|Q49768|ERA_MYCLE RecName: Full=GTPase Era
          Length = 300

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 34/175 (19%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275
           R+G+ + ++G  N GKS+L NAL    VAI +  P TTR  +   +  EG + + + DT 
Sbjct: 5   RSGF-VCLIGRPNTGKSTLTNALVGTKVAITSMKPQTTRHTIRGIVHREGNFQIVLVDTP 63

Query: 276 GIRETDDIVEK---EGIKRTFLEVENADLILLLKE---------INSKKEISFPKNIDFI 323
           G+     ++ K   + ++ T+ EV+   L +   E         +N  + ++ PK I  +
Sbjct: 64  GLHRPRTLLGKRLNDLVRDTYTEVDLIGLCIPADEATGPGDRWIVNQIRSVA-PKTI-LV 121

Query: 324 FIGTK----------------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
            I TK                SDL +   E     +S+ TGE ++ LI+ + + L
Sbjct: 122 VIVTKIDKVPKDRLSAQLVAVSDLVADSAEIVP--VSAVTGEQVDVLIDVLAAAL 174


>gi|325922584|ref|ZP_08184338.1| cell division checkpoint GTPase YihA [Xanthomonas gardneri ATCC
           19865]
 gi|325546934|gb|EGD18034.1| cell division checkpoint GTPase YihA [Xanthomonas gardneri ATCC
           19865]
          Length = 207

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            GY++   G SNAGKSS  NAL +++ +A V+  PG T+ ++   +  E  LV +
Sbjct: 24  GGYEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQIQPERCLVDL 78


>gi|317472456|ref|ZP_07931779.1| GTP-binding protein Era [Anaerostipes sp. 3_2_56FAA]
 gi|316900074|gb|EFV22065.1| GTP-binding protein Era [Anaerostipes sp. 3_2_56FAA]
          Length = 301

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDT 274
           +++G+ + ++G  N GKS+L N L  + +AI +  P TTR+ + T+  D  G +V + DT
Sbjct: 5   MKSGF-VTLIGRPNVGKSTLMNQLIGQKIAITSKKPQTTRNRIQTVFTDERGQIVFL-DT 62

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            GI    + +    +K     +   DLIL L E
Sbjct: 63  PGINRAKNKLGDYMLKVAERTLNEVDLILWLVE 95


>gi|315224466|ref|ZP_07866293.1| GTP-binding protein Era [Capnocytophaga ochracea F0287]
 gi|314945487|gb|EFS97509.1| GTP-binding protein Era [Capnocytophaga ochracea F0287]
          Length = 293

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 2/100 (2%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   +  + + V  SDT GI +    
Sbjct: 9   IIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRIFGIVSGDDFQVVFSDTPGIIKPSYA 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK--KEISFPKNID 321
           ++   +       E+AD+++ + EI  K  K+ +F K I+
Sbjct: 69  LQASMMDFVKSAFEDADILIYMVEIGEKELKDEAFFKRIN 108


>gi|227485436|ref|ZP_03915752.1| GTP-binding protein Era [Anaerococcus lactolyticus ATCC 51172]
 gi|227236566|gb|EEI86581.1| GTP-binding protein Era [Anaerococcus lactolyticus ATCC 51172]
          Length = 295

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ I ++G +N GKS+L   + K+ ++I+++ P TTRD + I  + E   +   DT 
Sbjct: 1   MKSGF-ISVVGRANVGKSTLMEKILKEKISIISNKPQTTRDKINIIYNDEDSQLIFIDTP 59

Query: 276 GIRETDDIVE 285
           GI++  ++++
Sbjct: 60  GIQKPRNVLQ 69


>gi|222152534|ref|YP_002561709.1| GTP-binding protein YqeH [Streptococcus uberis 0140J]
 gi|222113345|emb|CAR40947.1| GTP-binding protein [Streptococcus uberis 0140J]
          Length = 372

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I LD   +   
Sbjct: 160 LRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPLDDGSF--- 216

Query: 271 ISDTAGI 277
           I DT GI
Sbjct: 217 IFDTPGI 223


>gi|242279364|ref|YP_002991493.1| ribosome biogenesis GTP-binding protein YsxC [Desulfovibrio
           salexigens DSM 2638]
 gi|259645890|sp|C6BUE5|ENGB_DESAD RecName: Full=Probable GTP-binding protein EngB
 gi|242122258|gb|ACS79954.1| GTP-binding protein HSR1-related [Desulfovibrio salexigens DSM
           2638]
          Length = 201

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +I++ G SN GKSSL N LA +K +A ++  PG TR +   ++   GY +
Sbjct: 24  QIILAGRSNVGKSSLINCLASRKKLAKISSTPGKTRSLNYYEVSPHGYYI 73


>gi|325696516|gb|EGD38406.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK160]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|324995205|gb|EGC27117.1| GTP-binding protein [Streptococcus sanguinis SK678]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L      
Sbjct: 158 EHCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L  +N      LK ++ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLSAKN------LKYVSPKKEIK-PKT 251


>gi|324991141|gb|EGC23075.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK353]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|227488719|ref|ZP_03919035.1| HflX family GTP-binding protein [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227091141|gb|EEI26453.1| HflX family GTP-binding protein [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 505

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 31/181 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           KI I G++N+GKSSL NAL    V    A+   +  TTR    +D    G  +  SDT G
Sbjct: 283 KIAIAGYTNSGKSSLINALTGAGVLVEDALFATLDPTTRRAQLVD----GRSIIFSDTVG 338

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL---------LLKEINS----------KKEISFP 317
                     E  + T  EV  ADLIL          LK+I +          ++ +  P
Sbjct: 339 FVRHLPTQLVEAFRSTLEEVLGADLILHVVDGSDPFPLKQIEAVRGVILDIVREEGVEAP 398

Query: 318 KNIDFIFIGTKSD--LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
             I  +    ++D  + +      D +  +S+ TGEG+ EL ++I+  L+     +   I
Sbjct: 399 PEIIVVNKIDQADPLVLAELRHALDDVAFVSARTGEGIAELESRIELFLNTLDSHVTLHI 458

Query: 374 P 374
           P
Sbjct: 459 P 459


>gi|229817997|ref|ZP_04448279.1| hypothetical protein BIFANG_03284 [Bifidobacterium angulatum DSM
           20098]
 gi|229784601|gb|EEP20715.1| hypothetical protein BIFANG_03284 [Bifidobacterium angulatum DSM
           20098]
          Length = 547

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 30/210 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G++NAGKSSL N L      +   +  T    +      +G L    DT G     
Sbjct: 329 IAVVGYTNAGKSSLTNRLTGSGELVENALFATLDTAVRRTKAGDGRLYAYVDTVGFVRRL 388

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI--------SFPKNIDFIF 324
                E  K T  EV  AD+IL +          +I++  EI        + P+ + F  
Sbjct: 389 PTQLVEAFKSTLEEVAEADVILHVVDASHPDPFSQIDAVNEILADIEGTAAIPRILAF-- 446

Query: 325 IGTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
              K+DL    T       E   H++S+++G+G+ +L   ++++L      +   +P   
Sbjct: 447 --NKADLCDETTLERLAALEPDAHIVSAYSGDGVRQLREAVEALLPTPGVHVEALLPYSA 504

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
             L  LSQ   Y  +  +   D G+ + A+
Sbjct: 505 GAL--LSQIREYGHVQDVQWLDDGVRVSAD 532


>gi|210623874|ref|ZP_03294109.1| hypothetical protein CLOHIR_02060 [Clostridium hiranonis DSM 13275]
 gi|210153300|gb|EEA84306.1| hypothetical protein CLOHIR_02060 [Clostridium hiranonis DSM 13275]
          Length = 299

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N +  + +AI++D P TTR+ +  +  D E  +V + DT GI + 
Sbjct: 7   VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDDESQVVFL-DTPGIHKP 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
            + + +  +K       N DLIL +  ++S ++I
Sbjct: 66  KNKLGEIMVKAATDAFSNVDLILFV--VDSSRKI 97


>gi|157151133|ref|YP_001450489.1| ribosomal biogenesis GTPase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075927|gb|ABV10610.1| GTP-binding protein [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 12/84 (14%)

Query: 201 NDISSHISQGKLGEIIRNGYKI-----VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            D +  +   KL      G +I     +I+G  NAGKS+L N LA K +A+V + PG T+
Sbjct: 98  TDAAKKLMADKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTK 157

Query: 256 --DVLTIDLDLEGYLVKISDTAGI 277
               L  + DLE     I DT GI
Sbjct: 158 GQQWLKSNKDLE-----ILDTPGI 176


>gi|16800379|ref|NP_470647.1| ribosomal biogenesis GTPase [Listeria innocua Clip11262]
 gi|16413784|emb|CAC96542.1| lin1311 [Listeria innocua Clip11262]
 gi|313619217|gb|EFR90980.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
           S4-378]
          Length = 287

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKV---GKTLELLDTPGI 175


>gi|327470025|gb|EGF15489.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK330]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|327462196|gb|EGF08523.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK1]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|326773664|ref|ZP_08232947.1| GTP-binding protein [Actinomyces viscosus C505]
 gi|326636894|gb|EGE37797.1| GTP-binding protein [Actinomyces viscosus C505]
          Length = 565

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 32/179 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + I G++NAGKSSL N L +  +    A+   +  T R   T     EG    ++DT G 
Sbjct: 343 VAIAGYTNAGKSSLMNRLTEAGIMVEDALFATLDPTVRRAETS----EGRTYTLTDTVGF 398

Query: 277 IRE-TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEI--SFPKNIDF-- 322
           +R    +++  E  + T  EV  ADL+L          L ++ + + +    P  +D   
Sbjct: 399 VRNLPHELI--EAFRSTLEEVAGADLVLHVVDAAHPDPLSQVAAVRTVLSEIPGALDVSE 456

Query: 323 IFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           + +  K DL    T             +S+ TGEG+EEL  +I+ +L +    +   +P
Sbjct: 457 LIVLNKVDLADAVTLAALRTRLPSAVAVSARTGEGIEELRARIEQMLPHPQVSIDVVVP 515


>gi|262282075|ref|ZP_06059844.1| GTP-binding protein YqeH [Streptococcus sp. 2_1_36FAA]
 gi|262262529|gb|EEY81226.1| GTP-binding protein YqeH [Streptococcus sp. 2_1_36FAA]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L      
Sbjct: 158 EHCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L  +N      LK ++ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLSAKN------LKYVSPKKEIK-PKT 251


>gi|221232484|ref|YP_002511637.1| GTP-binding protein [Streptococcus pneumoniae ATCC 700669]
 gi|220674945|emb|CAR69522.1| GTP-binding protein [Streptococcus pneumoniae ATCC 700669]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|225548859|ref|ZP_03769836.1| GTP-binding protein Era [Borrelia burgdorferi 94a]
 gi|225370462|gb|EEG99898.1| GTP-binding protein Era [Borrelia burgdorferi 94a]
          Length = 290

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 15/141 (10%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRETD 281
            ILG  + GKS+L N++    ++I++ IP TTR+ +  I  D  G ++ I DT G   + 
Sbjct: 7   AILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFI-DTPGFHLSK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKN--IDFIFIGTKSDLYS 333
                  +K  +  +   +LIL + +I  K      K +   KN  I F+ I  K DL +
Sbjct: 66  KKFNIAMMKNIYSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILNKIDLEN 125

Query: 334 TYTEEYDHLISSFTGE-GLEE 353
           T  +E    I+ F  E G+E+
Sbjct: 126 TKIKE----ITQFLKEKGIED 142


>gi|148989411|ref|ZP_01820779.1| GTP-binding protein [Streptococcus pneumoniae SP6-BS73]
 gi|147925161|gb|EDK76241.1| GTP-binding protein [Streptococcus pneumoniae SP6-BS73]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|75761260|ref|ZP_00741242.1| GTP-binding protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218899503|ref|YP_002447914.1| GTPase family protein [Bacillus cereus G9842]
 gi|228902861|ref|ZP_04067004.1| hypothetical protein bthur0014_40310 [Bacillus thuringiensis IBL
           4222]
 gi|228941502|ref|ZP_04104052.1| hypothetical protein bthur0008_41400 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228967402|ref|ZP_04128435.1| hypothetical protein bthur0004_42030 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228974432|ref|ZP_04135000.1| hypothetical protein bthur0003_41860 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981027|ref|ZP_04141329.1| hypothetical protein bthur0002_41890 [Bacillus thuringiensis Bt407]
 gi|74491242|gb|EAO54476.1| GTP-binding protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218541005|gb|ACK93399.1| GTPase family protein [Bacillus cereus G9842]
 gi|228778687|gb|EEM26952.1| hypothetical protein bthur0002_41890 [Bacillus thuringiensis Bt407]
 gi|228785268|gb|EEM33279.1| hypothetical protein bthur0003_41860 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228792290|gb|EEM39859.1| hypothetical protein bthur0004_42030 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228818152|gb|EEM64227.1| hypothetical protein bthur0008_41400 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228856785|gb|EEN01302.1| hypothetical protein bthur0014_40310 [Bacillus thuringiensis IBL
           4222]
 gi|326942118|gb|AEA18014.1| GTP-binding protein YqeH [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 25/165 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R G  + ++G +N GKS+  N + K      ++V   +  PGTT D++ I LD E  
Sbjct: 155 EYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFIFI 325
           L    DT GI     +    G +   L     ++  ++ ++N ++ + F      D++  
Sbjct: 215 LY---DTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG 271

Query: 326 GTKS---------DLYSTYTEEYDHLISSFTGEGL-----EELIN 356
           G ++          ++ T  E+ D L  +  G+ L     EEL N
Sbjct: 272 GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPTPEELAN 316


>gi|327460344|gb|EGF06681.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK1057]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|295132648|ref|YP_003583324.1| GTP-binding protein [Zunongwangia profunda SM-A87]
 gi|294980663|gb|ADF51128.1| putative GTP-binding protein [Zunongwangia profunda SM-A87]
          Length = 294

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + V +SDT GI +    
Sbjct: 10  IIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQVILSDTPGIIKPAYE 69

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKK 312
           +++  +       E+AD+++ + EI  ++
Sbjct: 70  LQESMMDFVKSAFEDADILVYMVEIGERE 98


>gi|260893470|ref|YP_003239567.1| GTP-binding proten HflX [Ammonifex degensii KC4]
 gi|260865611|gb|ACX52717.1| GTP-binding proten HflX [Ammonifex degensii KC4]
          Length = 408

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 13/102 (12%)

Query: 217 RNGYKIV-ILGHSNAGKSSLFNALA-------KKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           R+G  +V ++G++NAGKS+L NALA        +D    T  P + R +L       G +
Sbjct: 190 RSGIPVVSLVGYTNAGKSTLLNALAGEGKEVLAEDRLFATLDPVSRRVILP-----SGRV 244

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             ++DT G  +      KE  K T  E+E ADL+L + ++ S
Sbjct: 245 FLLTDTVGFIKDLPPKLKEAFKATLEELETADLLLHVIDLTS 286


>gi|256074477|ref|XP_002573551.1| GTP-binding protein-animal [Schistosoma mansoni]
 gi|238658733|emb|CAZ29783.1| GTP-binding protein-animal, putative [Schistosoma mansoni]
          Length = 406

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 6/113 (5%)

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
            + F + E+L+ +     D SS +S        R    + ++G  N GKS+L N L ++ 
Sbjct: 196 TKGFGTSELLSLLANYSRDPSSSLSNTN----ARLSLTVGVVGLPNTGKSALINTLKRQK 251

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTFL 294
           V I  ++PG TR    + +D   +L+    T   + +D  D+V K  +K   L
Sbjct: 252 VCISGNVPGLTRQSQRVRIDKNLFLLDTPGTLVSKSSDASDLVLKNCVKPEML 304


>gi|268592879|ref|ZP_06127100.1| GTP-binding protein HflX [Providencia rettgeri DSM 1131]
 gi|291311669|gb|EFE52122.1| GTP-binding protein HflX [Providencia rettgeri DSM 1131]
          Length = 426

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 111/272 (40%), Gaps = 41/272 (15%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ +  IL   + +     QG+      +   I ++G++NAGKSSLFN +   DV     
Sbjct: 168 RDKIKQILSRLSRVEKQREQGRQARSKADIPTISLVGYTNAGKSSLFNRMTAADVYAADQ 227

Query: 250 IPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILL-- 304
           +  T    L  ID++  G +V ++DT G IR    D+V     K T  E   A L+L   
Sbjct: 228 LFATLDPTLRRIDVEDVGVVV-LADTVGFIRHLPHDLV--AAFKATLQETREATLLLHVI 284

Query: 305 ----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISS 345
                     +  + S  E      I  + +  K D+   +    D           +S+
Sbjct: 285 DAADNRLDENIHAVESVLEEIEADEIPTLLVMNKVDMLEDFVPRIDRDEDNKPVRVWVSA 344

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL----NEKDCG 401
            TG+G+  L+  +   LS +   +   +P ++  L       R+ ++ S+     E+D  
Sbjct: 345 QTGDGIPLLLQALTERLSGEIAHVELRLPPNEGRLRS-----RFYQLQSIEREWQEEDGS 399

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
           + +    +R+  V   ++  C   +QL D + 
Sbjct: 400 IGL---EVRMPMVDWRRL--CKQEQQLPDYVI 426


>gi|254508627|ref|ZP_05120743.1| ferrous iron transport protein B [Vibrio parahaemolyticus 16]
 gi|219548478|gb|EED25487.1| ferrous iron transport protein B [Vibrio parahaemolyticus 16]
          Length = 833

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 221 KIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           K+++ G  NAGKS++FN L  A++ VA   + PG T D  T    + G   ++ D  G  
Sbjct: 5   KVLLAGQQNAGKSTIFNMLTGARQHVA---NYPGVTVDKKTGYFSVAGDAYQLIDLPGTY 61

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
                  +E + R  L  E+AD++L
Sbjct: 62  SLSCYSLEERVARDALRQESADVVL 86


>gi|182678502|ref|YP_001832648.1| GTP-binding proten HflX [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182634385|gb|ACB95159.1| GTP-binding proten HflX [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 466

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 31/173 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I ++G++NAGKS+LFN L + DV +  ++   T D     L L  G  V +SDT G    
Sbjct: 228 IALVGYTNAGKSTLFNRLTEADV-LAQNMLFATLDPTLRSLTLPHGAKVILSDTVGFISD 286

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---------------I 325
              +     + T  EV  ADLIL +++I  +   +  ++++ +                +
Sbjct: 287 LPTMLVSAFRATLEEVLEADLILHVRDIAHQDAEAQCQDVESVLAELGIDMADEQRILEV 346

Query: 326 GTKSDLYS--------------TYTEEYDHLISSFTGEGLEELINKIKSILSN 364
             K+DL                   E    L+S+ TG+G+  L  +I++ L+ 
Sbjct: 347 WNKADLLDEEAQAAALNNARRWKNAENQPILVSALTGQGVATLEAEIEARLAR 399


>gi|332826860|gb|EGJ99660.1| GTP-binding protein Era [Dysgonomonas gadei ATCC BAA-286]
          Length = 293

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + V+I+T    TTR  +   ++ + Y +  SDT G+   +  
Sbjct: 9   IVGNPNVGKSTLMNLLVGEKVSIITSKAQTTRHRILGIVNTDDYQIVYSDTPGVLRPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  +  +   + +AD++L + ++  K +    KN +F+
Sbjct: 69  LQESMLNFSVSALSDADVLLYMTDVIEKTD----KNEEFL 104


>gi|332363372|gb|EGJ41157.1| GTP-binding protein [Streptococcus sanguinis SK49]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L      
Sbjct: 158 EHCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL------ 211

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
              +D + I +T  I+ +  +   +L  +N      LK ++ KKEI  PK 
Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLSAKN------LKYVSPKKEIK-PKT 251


>gi|325689692|gb|EGD31696.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           sanguinis SK115]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 12/84 (14%)

Query: 201 NDISSHISQGKLGEIIRNGYKI-----VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            D +  +   KL      G +I     +I+G  NAGKS+L N LA K +A+V + PG T+
Sbjct: 98  TDAAKKLMSDKLARQKERGIRIETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTK 157

Query: 256 --DVLTIDLDLEGYLVKISDTAGI 277
               L  + DLE     I DT GI
Sbjct: 158 GQQWLKSNKDLE-----ILDTPGI 176


>gi|307243689|ref|ZP_07525829.1| GTP-binding protein Era [Peptostreptococcus stomatis DSM 17678]
 gi|306492898|gb|EFM64911.1| GTP-binding protein Era [Peptostreptococcus stomatis DSM 17678]
          Length = 300

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D P TTR+ +      +   +   DT GI +  
Sbjct: 8   VSIVGRPNVGKSTLMNNMVGEKIAIMSDKPQTTRNTIQAVYTDDQAQIVFLDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + + +  +K      +N D IL +
Sbjct: 68  NKLGQMMVKSAEESFKNVDCILFV 91


>gi|258544602|ref|ZP_05704836.1| GTP-binding protein Era [Cardiobacterium hominis ATCC 15826]
 gi|258520144|gb|EEV89003.1| GTP-binding protein Era [Cardiobacterium hominis ATCC 15826]
          Length = 300

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R G+ I ++G  N GKS+L N L  + +AI +  P TTR  +L I    E  ++ + DT 
Sbjct: 4   RAGH-IAVVGRPNVGKSTLINHLIGQKIAITSKKPQTTRHALLGIHTTGENQIIFV-DTP 61

Query: 276 GIRETDDIVEKEGIKRT-FLEVENADLILLLKE 307
           GI ++ +      + RT +  ++  DLIL + E
Sbjct: 62  GIHQSREKAINRHMNRTAWQSMDYVDLILQVSE 94


>gi|227890109|ref|ZP_04007914.1| GTP-binding protein Era [Lactobacillus johnsonii ATCC 33200]
 gi|268319372|ref|YP_003293028.1| GTP-binding protein [Lactobacillus johnsonii FI9785]
 gi|227849553|gb|EEJ59639.1| GTP-binding protein Era [Lactobacillus johnsonii ATCC 33200]
 gi|262397747|emb|CAX66761.1| GTP-binding protein [Lactobacillus johnsonii FI9785]
          Length = 303

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + VAI++  P TTR+ ++ I  D +  +V I DT GI + 
Sbjct: 13  VALIGRPNVGKSTLLNYLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFI-DTPGIHKP 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + ++    K ++  ++  D++L + E
Sbjct: 72  KNKLDDFMDKSSYSALDEVDVVLFMVE 98


>gi|145504913|ref|XP_001438423.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74833854|emb|CAI39380.1| rab_C79 [Paramecium tetraurelia]
 gi|124405595|emb|CAK71026.1| unnamed protein product [Paramecium tetraurelia]
          Length = 239

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 43/166 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE----GYLVKISDTAG 276
           KI+++G+S+ GK+SL   +  K         GT    ++ID +++     Y V I DTAG
Sbjct: 8   KILVVGNSSVGKTSLI--VKYKTNQFSPQTSGTMGVDMSIDKNVKINNNLYDVAIWDTAG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISF-----PKNIDFIF 324
                 IV+        +  +NA   L+  +++           I F     P+N+  I 
Sbjct: 66  QERFQSIVK--------ISSQNAHASLICFDLSDPLSLDSVASWIQFLKSEGPQNLQIII 117

Query: 325 IGTKSDLYSTYTEEY-----------------DHLISSFTGEGLEE 353
           +GTK DL   YT++                   HL SS TGEG+++
Sbjct: 118 VGTKKDLQGQYTQDQLKSISTAWKANFQDEFPIHLTSSKTGEGIQD 163


>gi|322377769|ref|ZP_08052258.1| ribosome biogenesis GTPase YqeH [Streptococcus sp. M334]
 gi|321281192|gb|EFX58203.1| ribosome biogenesis GTPase YqeH [Streptococcus sp. M334]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|317486703|ref|ZP_07945520.1| ribosome biogenesis GTP-binding protein YsxC [Bilophila wadsworthia
           3_1_6]
 gi|316922086|gb|EFV43355.1| ribosome biogenesis GTP-binding protein YsxC [Bilophila wadsworthia
           3_1_6]
          Length = 211

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 9/60 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDV----LTID----LDLEGY 267
           R   +I + G SN GKSSL NALA +K +A ++  PG TR +    +  D    +DL GY
Sbjct: 31  RQEAQIALAGRSNVGKSSLVNALARRKQLAKISATPGKTRSINFYRVAPDGFSLVDLPGY 90


>gi|310821558|ref|YP_003953916.1| GTP-binding protein Era [Stigmatella aurantiaca DW4/3-1]
 gi|309394630|gb|ADO72089.1| GTP-binding protein Era [Stigmatella aurantiaca DW4/3-1]
          Length = 324

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R+G+  +I G  N GKS+L N L  + +AIV+  P TTR+ +L +    EG +  I DT 
Sbjct: 18  RSGFAALI-GRPNVGKSTLLNQLTGEKIAIVSPKPQTTRNRILGVVTRPEGQVAFI-DTP 75

Query: 276 GIRET 280
           GI + 
Sbjct: 76  GIHQA 80


>gi|306825774|ref|ZP_07459113.1| ribosome biogenesis GTPase YqeH [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432135|gb|EFM35112.1| ribosome biogenesis GTPase YqeH [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|303326799|ref|ZP_07357241.1| ribosome biogenesis GTP-binding protein YsxC [Desulfovibrio sp.
           3_1_syn3]
 gi|302862787|gb|EFL85719.1| ribosome biogenesis GTP-binding protein YsxC [Desulfovibrio sp.
           3_1_syn3]
          Length = 211

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDV 257
           +I + G SN GKSSL NALA +K +A V+  PG TR V
Sbjct: 24  QIALAGRSNVGKSSLINALAGRKKLAKVSATPGKTRSV 61


>gi|326316286|ref|YP_004233958.1| GTP-binding proten HflX [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323373122|gb|ADX45391.1| GTP-binding proten HflX [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 374

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 8/106 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           + + I ++G++NAGKS+LFNAL K   A   D    T D  T  L L   G  V +SDT 
Sbjct: 184 DTFNISLVGYTNAGKSTLFNALVKAR-AYAADQLFATLDTTTRQLYLAELGGTVSLSDTV 242

Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320
           G IR+    +  +  + T  E  +ADL+L + + ++     FP+ I
Sbjct: 243 GFIRDLPHGL-IDAFQATLQEAVDADLLLHVVDASNP---DFPEQI 284


>gi|227542284|ref|ZP_03972333.1| HflX family GTP-binding protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181945|gb|EEI62917.1| HflX family GTP-binding protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 505

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 31/181 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           KI I G++N+GKSSL NAL    V    A+   +  TTR    +D    G  +  SDT G
Sbjct: 283 KIAIAGYTNSGKSSLINALTGAGVLVEDALFATLDPTTRRAQLVD----GRSIIFSDTVG 338

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL---------LLKEINS----------KKEISFP 317
                     E  + T  EV  ADLIL          LK+I +          ++ +  P
Sbjct: 339 FVRHLPTQLVEAFRSTLEEVLGADLILHVVDGSDPFPLKQIEAVRGVILDIVREEGVEAP 398

Query: 318 KNIDFIFIGTKSD--LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
             I  +    ++D  + +      D +  +S+ TGEG+ EL ++I+  L+     +   I
Sbjct: 399 PEIIVVNKIDQADPLVLAELRHALDDVAFVSARTGEGIAELESRIELFLNTLDSHVTLHI 458

Query: 374 P 374
           P
Sbjct: 459 P 459


>gi|262282235|ref|ZP_06060003.1| ribosomal biogenesis GTPase [Streptococcus sp. 2_1_36FAA]
 gi|262261526|gb|EEY80224.1| ribosomal biogenesis GTPase [Streptococcus sp. 2_1_36FAA]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    L  + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----ILDTPGI 176


>gi|225011396|ref|ZP_03701834.1| GTP-binding protein Era [Flavobacteria bacterium MS024-2A]
 gi|225003899|gb|EEG41871.1| GTP-binding protein Era [Flavobacteria bacterium MS024-2A]
          Length = 296

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ I I+G+ N GKS+L NAL  K+++I+T    TTR  +   ++ + + + +SDT G
Sbjct: 7   KSGF-ISIVGNPNVGKSTLMNALVGKELSIITAKAQTTRHRILGIINGDDFQMVLSDTPG 65

Query: 277 I 277
           +
Sbjct: 66  V 66


>gi|167031160|ref|YP_001666391.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas putida
           GB-1]
 gi|189037186|sp|B0KG04|ENGB_PSEPG RecName: Full=Probable GTP-binding protein EngB
 gi|166857648|gb|ABY96055.1| small GTP-binding protein [Pseudomonas putida GB-1]
          Length = 210

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +V N IL L    +  +S  K+ +   + GY++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QVKNPILGLCQKATFALSAAKVEQCPDDQGYEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTRDVLTIDLDLEGYLVKI 271
            PG T+ +    LD E  LV +
Sbjct: 62  TPGRTQLLNFFSLDDERRLVDL 83


>gi|157149789|ref|YP_001449761.1| GTP-binding protein YqeH [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157074583|gb|ABV09266.1| GTP-binding protein [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 22/108 (20%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I L         
Sbjct: 161 RKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL--------- 211

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
           +D + I +T  I+ +  +   +L  +N      LK I+ KKEI  PK 
Sbjct: 212 ADGSHIYDTPGIIHRHQMAH-YLSAKN------LKYISPKKEIK-PKT 251


>gi|115377693|ref|ZP_01464886.1| GTP-binding protein Era [Stigmatella aurantiaca DW4/3-1]
 gi|115365299|gb|EAU64341.1| GTP-binding protein Era [Stigmatella aurantiaca DW4/3-1]
          Length = 313

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R+G+  +I G  N GKS+L N L  + +AIV+  P TTR+ +L +    EG +  I DT 
Sbjct: 7   RSGFAALI-GRPNVGKSTLLNQLTGEKIAIVSPKPQTTRNRILGVVTRPEGQVAFI-DTP 64

Query: 276 GIRET 280
           GI + 
Sbjct: 65  GIHQA 69


>gi|315931452|gb|EFV10419.1| small GTP-binding domain protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 207

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL K ++  V +  G T +  +     + Y  ++ D  G    
Sbjct: 5   KIALVGQPNVGKSLLINALCKANMK-VGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D   E+E I R FL   + D+I+
Sbjct: 64  DGYSEEEKITRHFLNQNDYDVIV 86


>gi|307706091|ref|ZP_07642910.1| conserved hypothetical protein [Streptococcus mitis SK321]
 gi|307618491|gb|EFN97639.1| conserved hypothetical protein [Streptococcus mitis SK321]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|269859681|ref|XP_002649565.1| GTPase, predicted [Enterocytozoon bieneusi H348]
 gi|220067116|gb|EED44584.1| GTPase, predicted [Enterocytozoon bieneusi H348]
          Length = 430

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I  +G+ N GKSSL N L  K V  V  IPG T+    I L  + YL+   D+ G+   +
Sbjct: 293 IGFVGYPNIGKSSLINILKNKQVCKVAPIPGETKVWQYITLMKDVYLI---DSPGVVPIN 349

Query: 282 DIVEKEGIKRTFLEVEN-ADLILLLKEI 308
           ++  KE +    + VEN AD    + EI
Sbjct: 350 NL--KEAVLHGAVRVENLADPDFYVAEI 375


>gi|120610117|ref|YP_969795.1| GTP-binding protein [Acidovorax citrulli AAC00-1]
 gi|120588581|gb|ABM32021.1| GTP-binding protein HflX [Acidovorax citrulli AAC00-1]
          Length = 390

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 8/106 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           + + I ++G++NAGKS+LFNAL K   A   D    T D  T  L L   G  V +SDT 
Sbjct: 200 DTFNISLVGYTNAGKSTLFNALVKAR-AYAADQLFATLDTTTRQLYLAELGGTVSLSDTV 258

Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320
           G IR+    +  +  + T  E  +ADL+L + + ++     FP+ I
Sbjct: 259 GFIRDLPHGL-IDAFQATLQEAVDADLLLHVVDASNP---DFPEQI 300


>gi|15827260|ref|NP_301523.1| GTP-binding protein Era [Mycobacterium leprae TN]
 gi|221229738|ref|YP_002503154.1| GTP-binding protein Era [Mycobacterium leprae Br4923]
 gi|466988|gb|AAA17174.1| B1937_F3_102 [Mycobacterium leprae]
 gi|13092809|emb|CAC30139.1| putative Era-family GTP-binding protein [Mycobacterium leprae]
 gi|219932845|emb|CAR70724.1| putative Era-family GTP-binding protein [Mycobacterium leprae
           Br4923]
          Length = 302

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 34/175 (19%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275
           R+G+ + ++G  N GKS+L NAL    VAI +  P TTR  +   +  EG + + + DT 
Sbjct: 7   RSGF-VCLIGRPNTGKSTLTNALVGTKVAITSMKPQTTRHTIRGIVHREGNFQIVLVDTP 65

Query: 276 GIRETDDIVEK---EGIKRTFLEVENADLILLLKE---------INSKKEISFPKNIDFI 323
           G+     ++ K   + ++ T+ EV+   L +   E         +N  + ++ PK I  +
Sbjct: 66  GLHRPRTLLGKRLNDLVRDTYTEVDLIGLCIPADEATGPGDRWIVNQIRSVA-PKTI-LV 123

Query: 324 FIGTK----------------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
            I TK                SDL +   E     +S+ TGE ++ LI+ + + L
Sbjct: 124 VIVTKIDKVPKDRLSAQLVAVSDLVADSAEIVP--VSAVTGEQVDVLIDVLAAAL 176


>gi|313623978|gb|EFR94077.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
           J1-023]
          Length = 287

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKV---GKTLELLDTPGI 175


>gi|282162882|ref|YP_003355267.1| ferrous iron transport protein B [Methanocella paludicola SANAE]
 gi|282155196|dbj|BAI60284.1| ferrous iron transport protein B [Methanocella paludicola SANAE]
          Length = 647

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+   GKSSLF+ L    V I+++ PGTT +V    +  +G  + +SD  G+   
Sbjct: 17  KVALIGNPTVGKSSLFSRLTGIGV-IISNYPGTTVEVAHGRVAHDGVSLDLSDLPGVYSL 75

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D    +E     FL  E  D+IL
Sbjct: 76  DTASSEERTVLDFLRDERPDVIL 98


>gi|262373437|ref|ZP_06066715.1| GTP-binding protein HflX [Acinetobacter junii SH205]
 gi|262311190|gb|EEY92276.1| GTP-binding protein HflX [Acinetobacter junii SH205]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 31/207 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           I ++G++NAGKS+LFN LAK DV     +  T    L  ++ D  G +V ++DT G +R 
Sbjct: 202 ISLVGYTNAGKSTLFNILAKSDVYAADQLFATLDPTLRRLEWDGIGTVV-LADTVGFVRN 260

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIF- 324
              D+V  E  K T  E   A L+L + + NS              KEI     I  ++ 
Sbjct: 261 LQHDLV--ESFKATLEETLEATLLLHVIDSNSPNMDEQIEAVESVLKEIGADAPILHVYN 318

Query: 325 ----IGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSH-- 376
                G  + +     +  D + +S+ +G+GLE L   ++  L  + +     + P++  
Sbjct: 319 KIDLSGDAAKIIYKAPDVPDRVYVSAHSGQGLELLSQAVQQCLMGQLQHFDLVLKPAYGK 378

Query: 377 -KRHLYHLS--QTVRYLEMASLNEKDC 400
            +  LY L+  Q+  Y E  +L    C
Sbjct: 379 LRTQLYTLNVIQSEHYDEQGNLQLTVC 405


>gi|163782422|ref|ZP_02177420.1| ferrous iron transport protein B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882455|gb|EDP75961.1| ferrous iron transport protein B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 695

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ + G+ N GK+++ N LA   +  V + PG T +     +    Y +   D  GI   
Sbjct: 6   KVAVAGNPNVGKTTILNQLAGTSLK-VGNWPGVTVEKKEAVVKFNDYEIHFIDLPGIYTL 64

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           + I E E I   FLE E  D+IL
Sbjct: 65  EPISEDERIAVHFLEEEKPDVIL 87


>gi|126655845|ref|ZP_01727284.1| GTP-binding protein, HSR1-related [Cyanothece sp. CCY0110]
 gi|126623324|gb|EAZ94029.1| GTP-binding protein, HSR1-related [Cyanothece sp. CCY0110]
          Length = 527

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 5/114 (4%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRD 256
           N + SH S+ +     +    I I+G++NAGKS+L NAL   +V     +   +  TTR 
Sbjct: 333 NKLQSHRSRLRQQRQKQEVPTIAIVGYTNAGKSTLINALTNAEVYTADQLFATLDPTTRR 392

Query: 257 VLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  ID D +  Y   ++DT G          +  + T  EV  AD +L L +++
Sbjct: 393 LSGIDSDTQQLYTFLLTDTVGFIHELPPSLVDAFRATLEEVTEADALLHLVDLS 446


>gi|15673276|ref|NP_267450.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724271|gb|AAK05392.1|AE006361_8 GTP-binding protein [Lactococcus lactis subsp. lactis Il1403]
 gi|326406832|gb|ADZ63903.1| Ribosome biogenesis GTPase A [Lactococcus lactis subsp. lactis
           CV56]
          Length = 282

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
           S+   QWI+     + F+   ++  EE     +++K +    +  K  ++  ++  K   
Sbjct: 65  SNAVAQWIEFFDE-QGFVTLAINSKEE-----YTAKRL---TVAAKKLMADKVAHDKERG 115

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I     + +I+G  NAGKS+L N LA K VA+  + PG T+    I  + E   +++ DT
Sbjct: 116 IAHTTLRTMIIGIPNAGKSTLMNRLAGKKVAVTGNRPGVTKGQQWIRTNKE---LELLDT 172

Query: 275 AGI 277
            GI
Sbjct: 173 PGI 175


>gi|307708267|ref|ZP_07644734.1| GTP-binding protein [Streptococcus mitis NCTC 12261]
 gi|307615713|gb|EFN94919.1| GTP-binding protein [Streptococcus mitis NCTC 12261]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|301784375|ref|XP_002927602.1| PREDICTED: LOW QUALITY PROTEIN: ras and EF-hand domain-containing
           protein-like [Ailuropoda melanoleuca]
          Length = 924

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 33/154 (21%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-------LDLEGYLV 269
           +  YKIV+ G +  GKSS    L K +        G T   L +D       +D E  ++
Sbjct: 723 QRAYKIVLAGDAAVGKSSFLMRLCKNEFR------GNTSATLGVDFQMKTLIVDGERTVL 776

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFP 317
           ++ DTAG +E    + K   +R+       D +LLL ++  +K            E +  
Sbjct: 777 QLWDTAG-QERFRSIAKSYFRRS-------DGVLLLYDVTCEKSFLNVREWVDMIEDATQ 828

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           ++I  + +G K+DL    T E    +  + GE L
Sbjct: 829 ESIPIMLVGNKADLRDAATAEEQKCVPGYLGEKL 862


>gi|270293291|ref|ZP_06199500.1| GTP-binding protein [Streptococcus sp. M143]
 gi|270278140|gb|EFA23988.1| GTP-binding protein [Streptococcus sp. M143]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|86608838|ref|YP_477600.1| GTP-binding protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557380|gb|ABD02337.1| GTP-binding protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 515

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIR 278
           K+V+ G  +AGK+SL NAL  +    V    GTT+ V   D +L G    V+I D  GI 
Sbjct: 136 KVVVFGTGSAGKTSLVNALLGRRAGAVGATLGTTQAVACYDWNLPGIPQPVQILDCPGIL 195

Query: 279 E 279
           E
Sbjct: 196 E 196


>gi|161881|gb|AAA98602.1| ORF 1 [Theileria parva]
          Length = 435

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 222 IVILGHSNAGKSSLFNA-LAKKDVA------IVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G SN GKS LFN+ LA+   A      IV++ PGTTRD       L+G  + + DT
Sbjct: 3   VSLIGRSNVGKSRLFNSILAQAGKASNILKSIVSEKPGTTRDSKQAQFYLKGNKITLVDT 62

Query: 275 AG 276
            G
Sbjct: 63  GG 64


>gi|52080368|ref|YP_079159.1| GTP-binding protein [Bacillus licheniformis ATCC 14580]
 gi|52785746|ref|YP_091575.1| YnbA [Bacillus licheniformis ATCC 14580]
 gi|319645675|ref|ZP_07999906.1| YnbA protein [Bacillus sp. BT1B_CT2]
 gi|52003579|gb|AAU23521.1| GTP-binding protein [Bacillus licheniformis ATCC 14580]
 gi|52348248|gb|AAU40882.1| YnbA [Bacillus licheniformis ATCC 14580]
 gi|317392222|gb|EFV73018.1| YnbA protein [Bacillus sp. BT1B_CT2]
          Length = 420

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +NG  +I ++G++NAGKS+ FN L   D +   ++   T D +T  + L  GY V +SDT
Sbjct: 197 KNGVLQIALVGYTNAGKSTWFNRLTDAD-SYEENLLFATLDPMTRKMMLPSGYSVLLSDT 255

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          + T  EV+ ADLIL
Sbjct: 256 VGFIQDLPTTLIAAFRSTLEEVKEADLIL 284


>gi|88596700|ref|ZP_01099937.1| ferrous iron transport protein B [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|88191541|gb|EAQ95513.1| ferrous iron transport protein B [Campylobacter jejuni subsp.
           jejuni 84-25]
          Length = 184

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL K ++  V +  G T +  +     + Y  ++ D  G    
Sbjct: 5   KIALVGQPNVGKSLLINALCKANMK-VGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSL 63

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D   E+E I R FL   + D+I+
Sbjct: 64  DGYSEEEKITRHFLNQNDYDVIV 86


>gi|91977123|ref|YP_569782.1| GTP-binding protein Era [Rhodopseudomonas palustris BisB5]
 gi|91683579|gb|ABE39881.1| GTP-binding protein Era [Rhodopseudomonas palustris BisB5]
          Length = 307

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 32/191 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +   G  + + DT G
Sbjct: 13  RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEGGSQIVLVDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPK-----N 319
           I      +++  +K  +    +ADL+ +L +  S               +  PK      
Sbjct: 72  IFAPKRRLDRAMVKTAWTGAHDADLVCVLLDARSGLDEEAETIFGNLANVGHPKVLVINK 131

Query: 320 IDFIFIGTKSDLYSTYTEE--YDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           ID +       L  T  +   +D   ++S+ +G+G+++L    +  L+ +    PF  P 
Sbjct: 132 IDLVPREKLLALTQTANQRLHFDETFMVSALSGDGVDDL----RRGLAARVPAGPFHYPE 187

Query: 376 HK------RHL 380
            +      RHL
Sbjct: 188 DQMSDAPLRHL 198


>gi|304382195|ref|ZP_07364703.1| GTP-binding protein Era [Prevotella marshii DSM 16973]
 gi|304336660|gb|EFM02888.1| GTP-binding protein Era [Prevotella marshii DSM 16973]
          Length = 303

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 8/102 (7%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +  
Sbjct: 19  IVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTDDMQIVFSDTPGVLQPNYK 78

Query: 284 VEKEGIKRTFLE--VENADLILLLKEINSKKEISFPKNIDFI 323
           +++    R F E  + +AD++L + ++  K E    KN+DF+
Sbjct: 79  LQES--MRAFSESALTDADVLLYVTDVVEKPE----KNMDFL 114


>gi|291550500|emb|CBL26762.1| GTP-binding protein Era [Ruminococcus torques L2-14]
          Length = 299

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 36/175 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   +   DT GI +  
Sbjct: 10  VTLIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIGTKS 329
           + + +  +      +   D++L L E            I   K++  P     I +  K 
Sbjct: 70  NKLGEYMVNIAERSLNEVDVVLWLVEPSTFIGAGEKHIIEQLKKVKTP----VILVINKV 125

Query: 330 DLYS---------TYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           D+            Y +E D      +S+  G+  +EL+N I        K LP+
Sbjct: 126 DMVKKEEVLTFIDAYRKECDFAEIVPVSARRGDNTDELVNVI-------MKYLPY 173


>gi|311745512|ref|ZP_07719297.1| GTP-binding protein Era [Algoriphagus sp. PR1]
 gi|126578067|gb|EAZ82287.1| GTP-binding protein Era [Algoriphagus sp. PR1]
          Length = 297

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 46/85 (54%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKS+L N L  + ++I++    TTR  +    + E Y +  SDT G+ +    
Sbjct: 13  IIGKPNVGKSTLMNILVGERLSIISSKAQTTRHRILGLTNTENYQIVFSDTPGMLKPQYE 72

Query: 284 VEKEGIKRTFLEVENADLILLLKEI 308
           + K  +    + +E+AD++L + ++
Sbjct: 73  LHKNMMSFVNISLEDADVVLFVTDL 97


>gi|88604166|ref|YP_504344.1| GTP-binding protein, HSR1-like protein [Methanospirillum hungatei
           JF-1]
 gi|88189628|gb|ABD42625.1| GTP-binding protein, HSR1-related protein [Methanospirillum
           hungatei JF-1]
          Length = 324

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 99/216 (45%), Gaps = 37/216 (17%)

Query: 169 RSFIEADLDFSEEED--------VQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRN 218
           R  +  D+ +S EE+        +   SS   ++ +D+LFL ND+ + +   KL   + +
Sbjct: 100 RGGLAKDVRYSSEENSIAARKKAIARLSSVVHQIEDDLLFL-NDVRNVLR--KL-PTVED 155

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            + IV+ G  N GKSS    ++  +  + +  P TT+ ++          V++ DT G+ 
Sbjct: 156 VFTIVVAGFPNVGKSSFIRRVSSAEPEVAS-YPFTTKGIIVGHYYHRHEKVQLIDTPGVL 214

Query: 279 ETDDIVEKEGIKRTFLE--VENADLILLLKEINSKKEISFPK--------------NIDF 322
           +   I E+  I+R  L   V  AD +L +  ++      +P                +  
Sbjct: 215 DRPGI-ERNAIERQALSAIVNIADALLFI--LDPSAHCGYPLEEQLRLLEEVKGLVQVPI 271

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           + +  K+DL  T   EY  + S+ +GEG++E+++ +
Sbjct: 272 VVVANKADL--TSIPEYPSM-STGSGEGVQEILDAL 304


>gi|76787382|ref|YP_329729.1| ribosomal biogenesis GTPase [Streptococcus agalactiae A909]
 gi|77407003|ref|ZP_00784017.1| GTP-binding protein [Streptococcus agalactiae H36B]
 gi|76562439|gb|ABA45023.1| GTP-binding protein [Streptococcus agalactiae A909]
 gi|77174389|gb|EAO77244.1| GTP-binding protein [Streptococcus agalactiae H36B]
          Length = 283

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           +S  I++ +   I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    +  
Sbjct: 105 MSDKIAKLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKS 164

Query: 263 DLEGYLVKISDTAGI 277
           + E   ++I DT GI
Sbjct: 165 NKE---LEILDTPGI 176


>gi|325479772|gb|EGC82860.1| ferrous iron transport protein B [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 718

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           YKI + G+ N+GK++LFNAL   +   V + PG T D      +L+G+  + I D  GI 
Sbjct: 3   YKIALAGNPNSGKTTLFNALTGSNQR-VGNWPGVTVD--KKQGNLKGHKDIVIEDLPGIY 59

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
                  +E + R +L  E  DLI+
Sbjct: 60  SLSPYTLEEVVSRQYLVGEKPDLII 84


>gi|312867386|ref|ZP_07727595.1| GTP-binding protein HflX [Streptococcus parasanguinis F0405]
 gi|311097087|gb|EFQ55322.1| GTP-binding protein HflX [Streptococcus parasanguinis F0405]
          Length = 403

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 24/197 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 187 FKIGLIGYTNAGKSTIMNQLTSKS-QFEADELFATLDATTKSIHLTGNLQVTLTDTVGFI 245

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDFIFIG----- 326
           +          K T  E +N DL++ +        E + K  +S  K++D + I      
Sbjct: 246 QDLPTELVSSFKSTLEESKNVDLLVHVIDASDPNHEEHEKTVLSIMKDLDMLEIPRLTLY 305

Query: 327 TKSDLYSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKL--PFSI--PSHKRHL 380
            K+D  + +T       LIS+ +    E+L    +++L  K ++L  PF+I  P  K + 
Sbjct: 306 NKADKVADFTPTQTPFSLISARSETACEDL----QALLLEKLRELFVPFTIRVPFSKSYR 361

Query: 381 YHLSQTVRYLEMASLNE 397
            H  +TV  ++   + E
Sbjct: 362 THDLETVAIIDQREIEE 378


>gi|289168472|ref|YP_003446741.1| hypothetical protein smi_1639 [Streptococcus mitis B6]
 gi|288908039|emb|CBJ22879.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 368

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|253689439|ref|YP_003018629.1| GTP-binding protein Era [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756017|gb|ACT14093.1| GTP-binding protein Era [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 301

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 37/193 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  + + +  EG Y     DT G+   
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRI-MGIHTEGPYQAIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I EK  I R             L    +   I   + I F+  GT       + ++ +
Sbjct: 68  --IEEKRAINR-------------LMNRAASSSIGDVELIIFVVEGTH------WNDDDE 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++    + L  L  INK+ ++ ++K K LP        H+  LSQ + +L++  ++ E
Sbjct: 107 MVLNKLRDQKLPVLLAINKVDNV-TDKTKLLP--------HIQFLSQQMDFLDVVPISAE 157

Query: 398 KDCGLDIIAENLR 410
           K   +D IA  +R
Sbjct: 158 KGTNVDTIASIVR 170


>gi|240103488|ref|YP_002959797.1| GTP-binding protein [Thermococcus gammatolerans EJ3]
 gi|239911042|gb|ACS33933.1| GTP-binding protein [Thermococcus gammatolerans EJ3]
          Length = 188

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           K+ I+G  N GKS+L NAL    V+ V D+PGTT+ ++
Sbjct: 3   KVAIIGAENVGKSTLMNALLGGKVSEVEDLPGTTKGII 40


>gi|227499390|ref|ZP_03929501.1| YdjC family protein [Anaerococcus tetradius ATCC 35098]
 gi|227218452|gb|EEI83695.1| YdjC family protein [Anaerococcus tetradius ATCC 35098]
          Length = 447

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 92/206 (44%), Gaps = 46/206 (22%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
           K  ++G +  GKSSL NA+  + +A V D+   TR V   D   E   L++I DT G+ E
Sbjct: 65  KFFLIGRTGVGKSSLVNAINGRYLAPVNDVYAQTRGVDIYDYKQEDQILLQILDTRGLSE 124

Query: 280 T----DDIVEKEGIK---RTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLY 332
           +    D+I  +E IK   R FL     DL L +   + + +I   +++ FI         
Sbjct: 125 SLALDDNISAEEMIKKELRAFL----PDLCLFMLNASHRDDIG--RDVRFI--------- 169

Query: 333 STYTEEYDHLISSFTGEGLEE----LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
               E+Y          G+E     +INK+  +  ++FK      PS     Y LS+T  
Sbjct: 170 KNLCEDYKK------NSGVELPVICIINKVDELAPSRFKD-----PSQ----YPLSKTKN 214

Query: 389 YLEMASLNEKDCGLDIIAENLRLASV 414
             E+ S      G  I  E+L+L S+
Sbjct: 215 INEVVSY----YGDIIKKEDLKLESI 236


>gi|170059372|ref|XP_001865335.1| GTP-binding protein-invertebrate [Culex quinquefasciatus]
 gi|167878163|gb|EDS41546.1| GTP-binding protein-invertebrate [Culex quinquefasciatus]
          Length = 492

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           IR   ++ I+G  N GKSSL N+L +K   +V   PG TR +  + +D
Sbjct: 203 IRTSIRVGIVGLPNVGKSSLVNSLKRKRACLVGAKPGITRQMQEVQID 250


>gi|332799158|ref|YP_004460657.1| ribosome biogenesis GTP-binding protein YlqF [Tepidanaerobacter sp.
           Re1]
 gi|332696893|gb|AEE91350.1| ribosome biogenesis GTP-binding protein YlqF [Tepidanaerobacter sp.
           Re1]
          Length = 285

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKSSL N +A +  A   DIPG TR+ + + +D     +++ DT GI
Sbjct: 113 RCMIIGIPNVGKSSLINQMAGRKSARTADIPGVTRNKMWLKVDDN---LELLDTPGI 166


>gi|332185025|ref|ZP_08386774.1| GTP-binding protein HflX [Sphingomonas sp. S17]
 gi|332014749|gb|EGI56805.1| GTP-binding protein HflX [Sphingomonas sp. S17]
          Length = 430

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 29/173 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280
           I ++G++NAGKS+LFN L    V +  D+   T D     + L G    I SDT G    
Sbjct: 210 IALVGYTNAGKSTLFNRLTGAHV-MAKDLLFATLDPTLRQIQLPGIDKAILSDTVGF--V 266

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338
            D+  +     K T  EV +ADL++ +++I      +   +++ +      D  +   E 
Sbjct: 267 SDLPTQLVAAFKATLEEVVSADLLIHVRDIAHPDSEAQRADVEAVLTEIGVDPETPRFEA 326

Query: 339 YDHL-----------------------ISSFTGEGLEELINKIKSILSNKFKK 368
           ++ +                       +S+ +GEG+++L+ ++ + L++  ++
Sbjct: 327 WNKIDLVEGELREDLLAEAGRRPHIVAVSAMSGEGIDQLVEQVAAALTSGHRR 379


>gi|294496068|ref|YP_003542561.1| GTP-binding proten HflX [Methanohalophilus mahii DSM 5219]
 gi|292667067|gb|ADE36916.1| GTP-binding proten HflX [Methanohalophilus mahii DSM 5219]
          Length = 428

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 27/181 (14%)

Query: 219 GYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           G+ ++ L G++NAGKS+LF AL  ++V  V ++  TT    T  L + G    ++DT G 
Sbjct: 189 GFSLLCLAGYTNAGKSTLFRALVDENVE-VENMLFTTLSPTTRYLGINGRWTLLTDTVGF 247

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKNI--------DFIF 324
            E       +  + T  +V  AD+ILL+ +I+      +K+++    I          I 
Sbjct: 248 IEDLPHFLVDAFRSTLEDVFRADIILLVVDISEPVDVIRKKLAVSHEIFWEQLEKATIIT 307

Query: 325 IGTKSDLYS-----------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              K+D  S            Y      ++S+ T EGL+EL + I S L  ++K+    +
Sbjct: 308 AINKADRLSPEELSSRLKSIAYLAPNPVVVSAKTVEGLDELKDVIYSHLP-EWKRFTLEL 366

Query: 374 P 374
           P
Sbjct: 367 P 367


>gi|256751148|ref|ZP_05492030.1| ferrous iron transport protein B [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750054|gb|EEU63076.1| ferrous iron transport protein B [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 656

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G++N GKS +FN L      I+ + PG T ++    L  +G  +KI D  GI    
Sbjct: 7   IALAGNANVGKSVIFNQLTGLT-QIIGNWPGKTVEMAEGLLRFKGRTIKIVDLPGIYSLS 65

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
              ++E + R F+  E  D+++
Sbjct: 66  AYSQEEIVSREFIAFEKPDVVI 87


>gi|227495843|ref|ZP_03926154.1| possible GTP-binding protein HflX [Actinomyces urogenitalis DSM
           15434]
 gi|226834600|gb|EEH66983.1| possible GTP-binding protein HflX [Actinomyces urogenitalis DSM
           15434]
          Length = 553

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 32/179 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + I G++NAGKSSL N L    +    A+   +  T R   T D    G L  ++DT G 
Sbjct: 316 VAIAGYTNAGKSSLMNRLTDAGLMVQDALFATLDPTVRKAETSD----GRLYTLTDTVGF 371

Query: 277 IRE-TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKK----EISFPKNIDF 322
           +R    +++  E  + T  EV  AD+++          L +I + +    EI     +  
Sbjct: 372 VRNLPHELI--EAFRSTLEEVAGADVLVHVVDAAHPDPLSQIAAVRAVLAEIPGALEVPE 429

Query: 323 IFIGTKSDLYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           + +  K+DL    T            ++S+ TGEGL+EL ++I+ +L      +   IP
Sbjct: 430 LIVLNKADLADAVTLAALRTRLPEAVIVSAATGEGLDELRSRIEEMLPRPDVPVDLVIP 488


>gi|196248955|ref|ZP_03147655.1| GTP-binding protein Era [Geobacillus sp. G11MC16]
 gi|196211831|gb|EDY06590.1| GTP-binding protein Era [Geobacillus sp. G11MC16]
          Length = 302

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKIS 272
           + GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +  +  D E  ++ I 
Sbjct: 3   KQGYKSGFVAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDEAQIIFI- 61

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           DT G+ +    +    +K     +   DLIL +
Sbjct: 62  DTPGVHKPKHKLGDFMMKVALNALREVDLILFM 94


>gi|77408070|ref|ZP_00784818.1| GTP-binding protein [Streptococcus agalactiae COH1]
 gi|77173335|gb|EAO76456.1| GTP-binding protein [Streptococcus agalactiae COH1]
          Length = 283

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           +S  I++ +   I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    +  
Sbjct: 105 MSDKIAKLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKS 164

Query: 263 DLEGYLVKISDTAGI 277
           + E   ++I DT GI
Sbjct: 165 NKE---LEILDTPGI 176


>gi|116511210|ref|YP_808426.1| GTP-binding protein Era [Lactococcus lactis subsp. cremoris SK11]
 gi|122940350|sp|Q031W8|ERA_LACLS RecName: Full=GTPase Era
 gi|116106864|gb|ABJ72004.1| GTPase [Lactococcus lactis subsp. cremoris SK11]
          Length = 303

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 42/84 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D P TTR+ +      E   +   DT GI +  
Sbjct: 11  VAILGRPNVGKSTFMNHVMGQKIAIMSDKPQTTRNKIQGIYTTENEQIVFIDTPGIHKPH 70

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +    ++  +  +   D++L +
Sbjct: 71  NALGDFMVQSAYSTLRECDVVLFM 94


>gi|46907499|ref|YP_013888.1| ribosomal biogenesis GTPase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093920|ref|ZP_00231659.1| GTPase family protein [Listeria monocytogenes str. 4b H7858]
 gi|226223875|ref|YP_002757982.1| hypothetical protein Lm4b_01282 [Listeria monocytogenes Clip81459]
 gi|254824667|ref|ZP_05229668.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-194]
 gi|254852674|ref|ZP_05242022.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-503]
 gi|254932411|ref|ZP_05265770.1| ribosomal biogenesis GTPase [Listeria monocytogenes HPB2262]
 gi|255520254|ref|ZP_05387491.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-175]
 gi|300765308|ref|ZP_07075292.1| GTPase family protein [Listeria monocytogenes FSL N1-017]
 gi|46880767|gb|AAT04065.1| GTPase family protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47017706|gb|EAL08500.1| GTPase family protein [Listeria monocytogenes str. 4b H7858]
 gi|225876337|emb|CAS05046.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605992|gb|EEW18600.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-503]
 gi|293583968|gb|EFF96000.1| ribosomal biogenesis GTPase [Listeria monocytogenes HPB2262]
 gi|293593906|gb|EFG01667.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-194]
 gi|300513991|gb|EFK41054.1| GTPase family protein [Listeria monocytogenes FSL N1-017]
 gi|328468562|gb|EGF39562.1| GTPase YlqF [Listeria monocytogenes 1816]
 gi|328475116|gb|EGF45900.1| GTPase YlqF [Listeria monocytogenes 220]
 gi|332311717|gb|EGJ24812.1| Ribosome biogenesis GTPase A [Listeria monocytogenes str. Scott A]
          Length = 287

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKV---GKTLELLDTPGI 175


>gi|16803312|ref|NP_464797.1| ribosomal biogenesis GTPase [Listeria monocytogenes EGD-e]
 gi|47097415|ref|ZP_00234964.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854]
 gi|224501782|ref|ZP_03670089.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-561]
 gi|254828635|ref|ZP_05233322.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL N3-165]
 gi|254829971|ref|ZP_05234626.1| ribosomal biogenesis GTPase [Listeria monocytogenes 10403S]
 gi|254898563|ref|ZP_05258487.1| ribosomal biogenesis GTPase [Listeria monocytogenes J0161]
 gi|254911947|ref|ZP_05261959.1| ribosomal biogenesis GTPase [Listeria monocytogenes J2818]
 gi|254936273|ref|ZP_05267970.1| ribosomal biogenesis GTPase [Listeria monocytogenes F6900]
 gi|255025708|ref|ZP_05297694.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J2-003]
 gi|284801657|ref|YP_003413522.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5578]
 gi|284994799|ref|YP_003416567.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5923]
 gi|16410688|emb|CAC99350.1| lmo1272 [Listeria monocytogenes EGD-e]
 gi|47014214|gb|EAL05198.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258601034|gb|EEW14359.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL N3-165]
 gi|258608862|gb|EEW21470.1| ribosomal biogenesis GTPase [Listeria monocytogenes F6900]
 gi|284057219|gb|ADB68160.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5578]
 gi|284060266|gb|ADB71205.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5923]
 gi|293589908|gb|EFF98242.1| ribosomal biogenesis GTPase [Listeria monocytogenes J2818]
          Length = 287

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKV---GKTLELLDTPGI 175


>gi|322388318|ref|ZP_08061922.1| GTP-binding protein [Streptococcus infantis ATCC 700779]
 gi|321140990|gb|EFX36491.1| GTP-binding protein [Streptococcus infantis ATCC 700779]
          Length = 368

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|255022620|ref|ZP_05294606.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-208]
          Length = 287

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKV---GKTLELLDTPGI 175


>gi|229588076|ref|YP_002870195.1| GTP-binding protein HflX [Pseudomonas fluorescens SBW25]
 gi|229359942|emb|CAY46796.1| GTP-binding protein HflX [Pseudomonas fluorescens SBW25]
          Length = 433

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFN + K DV     +  T    L  +D
Sbjct: 182 VRSQREQSRRGRSRADIPTVSLVGYTNAGKSTLFNNVTKSDVYAADQLFATLDPTLRRLD 241

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           LD  G +V ++DT G IR     +  E  + T  E  N+DL+L
Sbjct: 242 LDDLGPIV-LADTVGFIRHLPHKL-VEAFRSTLEESSNSDLLL 282


>gi|239616777|ref|YP_002940099.1| ferrous iron transport protein B [Kosmotoga olearia TBF 19.5.1]
 gi|239505608|gb|ACR79095.1| ferrous iron transport protein B [Kosmotoga olearia TBF 19.5.1]
          Length = 670

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 19/153 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG+ N GK+S+FNAL       V + PG T +     +       KI+D  G     
Sbjct: 33  VALLGNPNVGKTSIFNALTGAR-QYVGNWPGVTVEKRIGIMYHNNIEFKITDLPGTYTLS 91

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-INSKKEISFPKNI-----DFIFI------GTKS 329
                E I R FL  E+ D+++++ + IN ++ +     +     D I +        KS
Sbjct: 92  ATSPDEKIARDFLLYESPDIVIVISDAINLERSLYLLLQVLELRGDVILVINAIDEAKKS 151

Query: 330 DLYSTYTEEYDH------LISSFTGEGLEELIN 356
            +Y    E   H      L S+ TGEG+ EL N
Sbjct: 152 GIYIDKAEVEKHLGIPVVLTSAVTGEGIPELKN 184


>gi|229918611|ref|YP_002887257.1| GTP-binding protein HSR1-related [Exiguobacterium sp. AT1b]
 gi|229470040|gb|ACQ71812.1| GTP-binding protein HSR1-related [Exiguobacterium sp. AT1b]
          Length = 286

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 22/150 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           + +I+G  N GKS+L N LA +++AI  D PG T+    I   ++G  +++ DT GI   
Sbjct: 122 RALIIGIPNVGKSTLINRLAGRNIAITGDRPGVTKRQQWI--KMKGGEMELLDTPGI--- 176

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
                       + + E+  +   L    + K+     N+D I + T  +L++ Y E+  
Sbjct: 177 -----------LWPKFEDQLVGYRLAATGAIKDEIL--NLDDIALYTVRELHARYPEQLK 223

Query: 341 HL--ISSFTGEGLE--ELINKIKSILSNKF 366
               + +   +G+E  ELI K + ++S  +
Sbjct: 224 ERFKLETLPEDGVELLELIGKKRGLISGGY 253


>gi|77551765|gb|ABA94562.1| small GTP-binding protein domain containing protein, expressed
           [Oryza sativa Japonica Group]
 gi|218194387|gb|EEC76814.1| hypothetical protein OsI_14944 [Oryza sativa Indica Group]
          Length = 552

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 27/182 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G++NAGKS+L N L   DV     +   +  TTR VL  +    G    ++DT G 
Sbjct: 330 VSLVGYTNAGKSTLLNRLTGADVLAEDKLFATLDPTTRRVLMKN----GTEFLLTDTVGF 385

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI-------------SFPKNID 321
            +    +     + T  E+  + +I+ L +I+   ++++I             S PK + 
Sbjct: 386 IQKLPTMLVAAFRATLEEISESSVIVHLVDISHPLAQQQIDAVDKVLKELDIESIPKLVV 445

Query: 322 FIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +  I    D      E        IS+  G+GLEE  N I++ L +    +   +P  K 
Sbjct: 446 WNKIDNTDDTLRVKEEAEKQGIICISAINGDGLEEFCNAIQAKLKDSLVPIEAFVPYDKG 505

Query: 379 HL 380
            L
Sbjct: 506 EL 507


>gi|304392069|ref|ZP_07374011.1| GTP-binding protein Era [Ahrensia sp. R2A130]
 gi|303296298|gb|EFL90656.1| GTP-binding protein Era [Ahrensia sp. R2A130]
          Length = 314

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 3/98 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N L    V+IV+    TTR V+    + +   +  +DT G
Sbjct: 21  RAGF-VALIGAPNAGKSTLINRLVGTKVSIVSHKVQTTRTVVRGIANRDNSQIIFADTPG 79

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           I +    +++  +   +   ++AD+I LL  I+S++ I
Sbjct: 80  IFQPRRRLDRAMVDAAWGGAKDADMICLL--IDSERGI 115


>gi|225548173|ref|ZP_03769458.1| hypothetical protein RUMHYD_00152 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040612|gb|EEG50858.1| hypothetical protein RUMHYD_00152 [Blautia hydrogenotrophica DSM
           10507]
          Length = 301

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVK 270
           + E  ++G+ + ++G  N GKS+L N L  + +AI +  P TTR+ + T+    EG +V 
Sbjct: 1   MNENYKSGF-VALIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTSPEGQVVF 59

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           + DT GI +  + + +  ++     ++  D+IL L E
Sbjct: 60  L-DTPGIHKAKNKLGEYMVQVAERTLKEVDVILWLVE 95


>gi|75907766|ref|YP_322062.1| small GTP-binding protein domain-containing protein [Anabaena
           variabilis ATCC 29413]
 gi|75701491|gb|ABA21167.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC
           29413]
          Length = 517

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 38/222 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI--SDT 274
           R   ++V+ G  +AGK+SL NA+  + V  V    GTT+   T  L L+G   KI  +DT
Sbjct: 129 RGEIQVVVFGTGSAGKTSLVNAIMGRMVGKVDAPMGTTQVGETYCLRLKGLERKILITDT 188

Query: 275 AGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSKKEISFP-KNIDFI-----FIGT 327
            GI E      E+E + R       ADL+L + + + ++    P K++  I      +  
Sbjct: 189 PGILEAGVAGTEREQLARAL--ATEADLLLFVVDNDLRRSEYEPLKSLAEIGKRSLLVLN 246

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEEL-INKIKSILSNK----------FKKLPFSIPSH 376
           K+DLY+   E+ + +++      L  +  N + +I +N           F+  P  +P  
Sbjct: 247 KTDLYTD--EDKEAILARLRQRVLGFIATNDVVAIAANPEAAQLETGEPFQPEPDIVPLL 304

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           +R             MA++   + G D++A+N+ L S+ LG+
Sbjct: 305 RR-------------MAAILRAE-GEDLVADNILLQSLRLGE 332


>gi|328911847|gb|AEB63443.1| putative GTP-binding protein protease modulator [Bacillus
           amyloliquefaciens LL3]
          Length = 420

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +NG  +  ++G++NAGKS+ FN L   D +   D+   T D +T  + L  GY V +SDT
Sbjct: 197 KNGVLQAALVGYTNAGKSTWFNKLTSSD-SYEEDLLFATLDPMTRKMALPSGYSVLLSDT 255

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          + T  EV+ ADLI+
Sbjct: 256 VGFIQDLPTTLIAAFRSTLEEVKEADLII 284


>gi|251788565|ref|YP_003003286.1| GTP-binding protein HSR1-related [Dickeya zeae Ech1591]
 gi|247537186|gb|ACT05807.1| GTP-binding protein HSR1-related [Dickeya zeae Ech1591]
          Length = 288

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + AGKSSL NAL   +V+ V+D+   TR+ L   L++    + + D  G+ E++
Sbjct: 39  IGIMGKTGAGKSSLCNALFAGEVSPVSDVAACTREPLRFRLNVGERCMTLVDLPGVGESE 98

Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305
               E   + R   ++ + DL+L L
Sbjct: 99  RRDTEYAAMYRQ--QLPHLDLVLWL 121


>gi|229497021|ref|ZP_04390726.1| GTP-binding protein Era [Porphyromonas endodontalis ATCC 35406]
 gi|229316123|gb|EEN82051.1| GTP-binding protein Era [Porphyromonas endodontalis ATCC 35406]
          Length = 307

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 60/107 (56%), Gaps = 5/107 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G+ N GKS+L N L  + ++I+T    TTR  +   ++     V  SDT G
Sbjct: 17  RSGF-VNIVGNPNVGKSTLLNYLVGERLSIITSKAQTTRHRILGIVNTPDMQVVYSDTPG 75

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           + + +  +++     +   + +AD+++ + ++  ++E    KN+DF+
Sbjct: 76  VLKPNYKLQERMRAFSDQALTDADVLIYVTDVVERRE----KNLDFL 118


>gi|184155783|ref|YP_001844123.1| GTP-binding protein YqeH [Lactobacillus fermentum IFO 3956]
 gi|227515625|ref|ZP_03945674.1| GTP-binding protein [Lactobacillus fermentum ATCC 14931]
 gi|183227127|dbj|BAG27643.1| GTPase [Lactobacillus fermentum IFO 3956]
 gi|227086055|gb|EEI21367.1| GTP-binding protein [Lactobacillus fermentum ATCC 14931]
 gi|299783429|gb|ADJ41427.1| GTP-binding protein [Lactobacillus fermentum CECT 5716]
          Length = 374

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 15/103 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + K+     D+   +  PGTT D + I LD +G+ 
Sbjct: 164 EKYRQGRDVYVVGVTNVGKSTLINQIIKQRTGVEDLITTSRFPGTTLDKIEIPLD-DGH- 221

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            ++ DT GI   + +          L  E+  L+   KEI  K
Sbjct: 222 -ELVDTPGIIHQEQMAH-------VLPAEDLRLVAPQKEIKPK 256


>gi|89107126|ref|AP_000906.1| predicted GTP-binding protein [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111103|ref|NP_414787.4| CP4-6 prophage; predicted GTP-binding protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|170079878|ref|YP_001729198.1| CP4-6 prophage; GTP-binding protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|238899641|ref|YP_002925437.1| CP4-6 prophage; putative GTP-binding protein [Escherichia coli
           BW2952]
 gi|2495488|sp|P75678|YKFA_ECOLI RecName: Full=Uncharacterized protein ykfA
 gi|1552820|gb|AAB08672.1| similar to E. coli ORF_o289 [Escherichia coli]
 gi|85674399|dbj|BAA77923.2| predicted GTP-binding protein [Escherichia coli str. K12 substr.
           W3110]
 gi|87081706|gb|AAC73356.2| CP4-6 prophage; predicted GTP-binding protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|169887713|gb|ACB01420.1| CP4-6 prophage; predicted GTP-binding protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|238860646|gb|ACR62644.1| CP4-6 prophage; predicted GTP-binding protein [Escherichia coli
           BW2952]
 gi|260450551|gb|ACX40973.1| GTP-binding protein HSR1-related protein [Escherichia coli DH1]
 gi|315134938|dbj|BAJ42097.1| CP4-6 prophage; putative GTP-binding protein [Escherichia coli DH1]
          Length = 287

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 202 DISSHISQGKLGEIIR-NGYKIVI--LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           D+   +S+  L +I +   Y+ VI  +G +  GKSSL NAL   D++ V+D+   TR+ L
Sbjct: 16  DLPQWVSERLLQQINQLTNYEPVIGIMGKTGVGKSSLCNALFAGDISPVSDVAACTREPL 75

Query: 259 TIDLDLEGYLVKISDTAGIRET 280
              L +    + + D  G+ E+
Sbjct: 76  RFRLQVGDRYITLMDLPGVGES 97


>gi|17231279|ref|NP_487827.1| hypothetical protein all3787 [Nostoc sp. PCC 7120]
 gi|17132921|dbj|BAB75486.1| all3787 [Nostoc sp. PCC 7120]
          Length = 516

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 38/222 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI--SDT 274
           R   ++V+ G  +AGK+SL NA+  + V  V    GTT+   T  L L+G   KI  +DT
Sbjct: 129 RGEIQVVVFGTGSAGKTSLVNAIMGRMVGKVDAPMGTTQVGETYCLRLKGLERKILITDT 188

Query: 275 AGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSKKEISFP-KNIDFI-----FIGT 327
            GI E      E+E + R       ADL+L + + + ++    P K++  I      +  
Sbjct: 189 PGILEAGVAGTEREQLARAL--ATEADLLLFVVDNDLRRSEYEPLKSLAEIGKRSLLVLN 246

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEEL-INKIKSILSNK----------FKKLPFSIPSH 376
           K+DLY+   E+ + +++      L  +  N + +I +N           F+  P  +P  
Sbjct: 247 KTDLYTD--EDKEAILARLRQRVLGFIATNDVVAIAANPEAAQLETGEPFQPEPDIVPLL 304

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           +R             MA++   + G D++A+N+ L S+ LG+
Sbjct: 305 RR-------------MAAILRAE-GEDLVADNILLQSLRLGE 332


>gi|88800279|ref|ZP_01115846.1| GTP-binding protein, HSR1-related [Reinekea sp. MED297]
 gi|88776994|gb|EAR08202.1| GTP-binding protein, HSR1-related [Reinekea sp. MED297]
          Length = 467

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 10/146 (6%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETD 281
            ++GH N GKSS+ + L ++D   ++++ GTT    +  L+L G    ++ DT G +   
Sbjct: 7   AVVGHPNKGKSSIVSTLTRQDAVRISELSGTTTQAQSFQLNLNGQCQYELVDTPGFQRPR 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--FIGTKSDLYST----- 334
            ++ +            A +   L    ++ + S+   ++ +   +     +Y       
Sbjct: 67  QVLHELEQSAVNAAGRPAAVKAFLSRQQAQPDSSYTDEVELLTPVMAGAGVIYVVDGAMP 126

Query: 335 YTEEYDH--LISSFTGEGLEELINKI 358
           Y+ EY+    I  +TG+    LIN I
Sbjct: 127 YSAEYEAEMTILQWTGQPRMALINPI 152


>gi|313609087|gb|EFR84797.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
           monocytogenes FSL F2-208]
          Length = 287

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKV---GKTLELLDTPGI 175


>gi|224499056|ref|ZP_03667405.1| ribosomal biogenesis GTPase [Listeria monocytogenes Finland 1988]
          Length = 287

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKV---GKTLELLDTPGI 175


>gi|15672333|ref|NP_266507.1| GTP-binding protein Era [Lactococcus lactis subsp. lactis Il1403]
 gi|125623240|ref|YP_001031723.1| GTP-binding protein Era [Lactococcus lactis subsp. cremoris MG1363]
 gi|281490898|ref|YP_003352878.1| GTP-binding protein Era [Lactococcus lactis subsp. lactis KF147]
 gi|61223689|sp|P0A3C1|ERA_LACLA RecName: Full=GTPase Era
 gi|61223690|sp|P0A3C2|ERA_LACLM RecName: Full=GTPase Era
 gi|8163994|gb|AAF73946.1|AF233268_1 GTP-binding protein Era [Lactococcus lactis subsp. cremoris MG1363]
 gi|12723220|gb|AAK04449.1|AE006272_3 GTP-binding protein Era [Lactococcus lactis subsp. lactis Il1403]
 gi|124492048|emb|CAL96976.1| GTP-binding protein era homolog [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281374656|gb|ADA64176.1| GTP-binding protein Era [Lactococcus lactis subsp. lactis KF147]
 gi|300069990|gb|ADJ59390.1| GTP-binding protein Era [Lactococcus lactis subsp. cremoris NZ9000]
 gi|326405932|gb|ADZ63003.1| GTP-binding protein Era [Lactococcus lactis subsp. lactis CV56]
          Length = 303

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 42/84 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D P TTR+ +      E   +   DT GI +  
Sbjct: 11  VAILGRPNVGKSTFMNHVMGQKIAIMSDKPQTTRNKIQGIYTTENEQIVFIDTPGIHKPH 70

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +    ++  +  +   D++L +
Sbjct: 71  NALGDFMVQSAYSTLRECDVVLFM 94


>gi|313672845|ref|YP_004050956.1| ribosome biogenesis gtp-binding protein ysxc [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939601|gb|ADR18793.1| ribosome biogenesis GTP-binding protein YsxC [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 196

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 72/171 (42%), Gaps = 39/171 (22%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR----------DVLTIDLDLEGYLVK 270
           +  +G SN GKSS  N L  +KD+A V   PG TR          D+  + +DL GY   
Sbjct: 25  VCFVGKSNVGKSSAINTLINRKDLARVGKTPGKTRLLNFFSIKAKDISFVLVDLPGY--- 81

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISF----PKNIDF 322
               A + + +    K+ I+       N  L++ + +I    + + E+ F      N DF
Sbjct: 82  --GYAQVSKKEREEWKKSIENYLKFRNNLKLVVFILDIRRDPDEQDEVMFKWLKAYNKDF 139

Query: 323 IFIGTKSDLYST------YTEEYDH---------LISSFTGEGLEELINKI 358
           + + TKSD  S         E Y H         + SS T  G +EL  KI
Sbjct: 140 VMLLTKSDKLSNNEIAKRLKELYLHPMINVDNCIIFSSLTKRGKDELYQKI 190


>gi|315051586|ref|XP_003175167.1| nucleolar GTP-binding protein 2 [Arthroderma gypseum CBS 118893]
 gi|311340482|gb|EFQ99684.1| nucleolar GTP-binding protein 2 [Arthroderma gypseum CBS 118893]
          Length = 569

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 323 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLI---DCPG 379

Query: 277 -IRETDDIVEKEGIKRTFLEVEN 298
            +  ++++ E++ + R  + VEN
Sbjct: 380 VVPPSNNVTEEDILLRGVVRVEN 402


>gi|166032680|ref|ZP_02235509.1| hypothetical protein DORFOR_02395 [Dorea formicigenerans ATCC
           27755]
 gi|166027037|gb|EDR45794.1| hypothetical protein DORFOR_02395 [Dorea formicigenerans ATCC
           27755]
          Length = 298

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 11/99 (11%)

Query: 216 IRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYL 268
           ++N +K   + ++G  N GKS+L N L  + +AI ++ P TTR+    VLT D   EG +
Sbjct: 1   MKNDFKSGFVTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTD---EGQI 57

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           V + DT GI +  + + +  +      +   D++L L E
Sbjct: 58  VFV-DTPGIHKAKNKLGEYMVNVAEKTLNEVDVVLWLVE 95


>gi|125624005|ref|YP_001032488.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492813|emb|CAL97768.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070775|gb|ADJ60175.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 282

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
           SS   +WI+     + F+   ++  EE     +++K +    +  K  ++  ++  K   
Sbjct: 65  SSKVAEWIEYFDE-QGFVTLAINSKEE-----YTAKRL---TVAAKKLMADKVAHDKERG 115

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I     + +I+G  NAGKS+L N LA K VA+  + PG T+    I  + E   +++ DT
Sbjct: 116 IAHTTLRTMIIGIPNAGKSTLMNRLAGKKVAVTGNRPGVTKGQQWIRTNKE---LELLDT 172

Query: 275 AGI 277
            GI
Sbjct: 173 PGI 175


>gi|78044680|ref|YP_360380.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996795|gb|ABB15694.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 397

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  NAGKS+L N +  ++ AI + IPGTT D      +L  Y  V+  DT G+ +T
Sbjct: 12  IGIFGRCNAGKSTLLNNIIGEERAITSSIPGTTTDPNRRAFELLPYGPVEFIDTPGLDDT 71


>gi|306829001|ref|ZP_07462192.1| ribosome biogenesis GTPase YqeH [Streptococcus mitis ATCC 6249]
 gi|304428806|gb|EFM31895.1| ribosome biogenesis GTPase YqeH [Streptococcus mitis ATCC 6249]
          Length = 368

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|295099543|emb|CBK88632.1| ribosome biogenesis GTP-binding protein YsxC/EngB [Eubacterium
           cylindroides T2-87]
          Length = 189

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +V++G SN GKSS  NAL  +K +A V   PG TR +   D+D    LV +      + +
Sbjct: 23  VVVVGRSNVGKSSFINALTNRKKLAYVGSTPGKTRLLNFFDIDQTWILVDVPGYGYAKMS 82

Query: 281 DDIVEKEG 288
              +EK G
Sbjct: 83  KSSLEKLG 90


>gi|254464339|ref|ZP_05077750.1| GTP-binding proten HflX [Rhodobacterales bacterium Y4I]
 gi|206685247|gb|EDZ45729.1| GTP-binding proten HflX [Rhodobacterales bacterium Y4I]
          Length = 423

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 26/169 (15%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y IV L G++NAGKS+LFN L   +V +  D+   T D     ++L +G  + +SDT G 
Sbjct: 202 YPIVALVGYTNAGKSTLFNRLTGAEV-MAKDMLFATLDPTMRRVELPDGPEIILSDTVGF 260

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
                       + T  EV  AD+IL +++I+        ++++ I      D      E
Sbjct: 261 ISNLPTELVAAFRATLEEVLAADVILHVRDISHHDSKQQAEDVEAILASLGVDENRVRIE 320

Query: 338 EYD-----------------------HLISSFTGEGLEELINKIKSILS 363
            ++                       H IS+ TGEGL+ L+  I   L 
Sbjct: 321 VWNKLDQLPEEEAEARRQRAEREDGIHAISALTGEGLDGLLADIAEKLQ 369


>gi|197285742|ref|YP_002151614.1| GTP-binding protein Era [Proteus mirabilis HI4320]
 gi|227356256|ref|ZP_03840645.1| GTP-binding protein [Proteus mirabilis ATCC 29906]
 gi|194683229|emb|CAR43911.1| GTP-binding protein [Proteus mirabilis HI4320]
 gi|227163720|gb|EEI48636.1| GTP-binding protein [Proteus mirabilis ATCC 29906]
          Length = 302

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 37/193 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  ++ ID D   Y     DT G+   
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTD-GAYQAIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I EK  I R             L    +   I   + + F+  GT       +T + +
Sbjct: 68  --IEEKRAINR-------------LMNRAASSSIGDVELVIFVVEGT------NWTPDDE 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++         L  INK+ ++ ++K K LP        H+  LSQ + +L++  ++ E
Sbjct: 107 MVLNKLKSLRCPVLLAINKVDNV-TDKTKLLP--------HIGFLSQQMDFLDVVPISAE 157

Query: 398 KDCGLDIIAENLR 410
           K   +D IA+ +R
Sbjct: 158 KGMNVDTIAKIVR 170


>gi|167747959|ref|ZP_02420086.1| hypothetical protein ANACAC_02691 [Anaerostipes caccae DSM 14662]
 gi|167652609|gb|EDR96738.1| hypothetical protein ANACAC_02691 [Anaerostipes caccae DSM 14662]
          Length = 301

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDT 274
           +++G+ + ++G  N GKS+L N L  + +AI +  P TTR+ + T+  D  G +V + DT
Sbjct: 5   MKSGF-VTLIGRPNVGKSTLMNQLIGQKIAITSKKPQTTRNRIQTVFTDDRGQIVFL-DT 62

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            GI    + +    +K     +   DLIL L E
Sbjct: 63  PGINRAKNKLGDYMLKVAERTLNEVDLILWLVE 95


>gi|163741105|ref|ZP_02148497.1| GTP-binding protein HflX [Phaeobacter gallaeciensis 2.10]
 gi|161385458|gb|EDQ09835.1| GTP-binding protein HflX [Phaeobacter gallaeciensis 2.10]
          Length = 423

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 30/170 (17%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y IV L G++NAGKS+LFN L   +V +  D+   T D     + L +G  + +SDT G 
Sbjct: 202 YPIVALVGYTNAGKSTLFNRLTGAEV-MAKDMLFATLDPTMRRVQLPDGPEIILSDTVGF 260

Query: 278 RETDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF----------- 324
               D+  +     + T  EV  AD+++ +++I+  +  +   +++ I            
Sbjct: 261 --ISDLPTELVAAFRATLEEVLAADVVVHVRDISHDETQNQAADVESILASLGVDDSRAR 318

Query: 325 --IGTKSDLYSTYTEEYD----------HLISSFTGEGLEELINKIKSIL 362
             +  K DL      E            H IS+ +GEGLE+L+  I S L
Sbjct: 319 LEVWNKLDLLDDEQAEARRQRAEREDGIHAISAISGEGLEDLLADITSQL 368


>gi|138896062|ref|YP_001126515.1| GTP-binding protein [Geobacillus thermodenitrificans NG80-2]
 gi|134267575|gb|ABO67770.1| GTP-binding protein [Geobacillus thermodenitrificans NG80-2]
          Length = 302

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 32/182 (17%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKIS 272
           + GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +  +  D E  ++ I 
Sbjct: 3   KQGYKSGFVAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDEAQIIFI- 61

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP--- 317
           DT G+ +    +    +K     +   DLIL +              I    E++ P   
Sbjct: 62  DTPGVHKPKHKLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLNEVNTPVFL 121

Query: 318 --KNIDFI-------FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
               ID +        I    DLY T+ E     IS+  G  +E L+ +IK  L    + 
Sbjct: 122 VINKIDRVHPDELLPIIDRYKDLY-TFAEIVP--ISALEGNNVERLLEQIKQRLPEGPQY 178

Query: 369 LP 370
            P
Sbjct: 179 YP 180


>gi|309798779|ref|ZP_07693043.1| GTP-binding protein [Streptococcus infantis SK1302]
 gi|308117596|gb|EFO55008.1| GTP-binding protein [Streptococcus infantis SK1302]
          Length = 368

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L NA+ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|242373599|ref|ZP_04819173.1| GTP-binding protein [Staphylococcus epidermidis M23864:W1]
 gi|242348962|gb|EES40564.1| GTP-binding protein [Staphylococcus epidermidis M23864:W1]
          Length = 412

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++I ++G++NAGKSS FN LA     +K++   T  P T +    I ++ EG+ + ISDT
Sbjct: 206 FQIALVGYTNAGKSSWFNVLANEETYEKNLLFATLDPKTRQ----IQIN-EGFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL+L
Sbjct: 261 VGFIQKLPTTLVAAFKSTLEEAKGADLLL 289


>gi|224003191|ref|XP_002291267.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973043|gb|EED91374.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 461

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 19/121 (15%)

Query: 184 VQNFSSKEVLNDILFLKNDISSHIS------QGKLGEIIRNGYKIV---------ILGHS 228
           V N+ +K  + ++  ++  I+ H S      +G L  ++R   K+          ++G+ 
Sbjct: 251 VPNWVAKRWIGELAQIRPTIAFHASMTHAFGKGALISLLRQFGKLASDKKQISVGVIGYP 310

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK----ISDTAGIRETDDIV 284
           N GKSS+ N L  K    V  +PG T+    I L    YL+     + DTAG  E D ++
Sbjct: 311 NVGKSSVINTLISKKSCKVAPVPGETKIWQYITLFRNIYLIDCPGVVVDTAGDTEIDSVL 370

Query: 285 E 285
           +
Sbjct: 371 K 371


>gi|212550703|ref|YP_002309020.1| GTP-binding protein Era [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548941|dbj|BAG83609.1| GTP-binding protein Era [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 300

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L    ++I+T    TTR  +   ++     +  SDT GI   +  
Sbjct: 16  IVGNPNVGKSTLMNTLVGGKLSIITSKAQTTRHRIIGIVNKPNVQIVFSDTPGILRPNYK 75

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311
           ++K+ +  +   +E+AD++L + +I ++
Sbjct: 76  LQKKMLNFSESALEDADILLYVSDIKNQ 103


>gi|171742500|ref|ZP_02918307.1| hypothetical protein BIFDEN_01612 [Bifidobacterium dentium ATCC
           27678]
 gi|171278114|gb|EDT45775.1| hypothetical protein BIFDEN_01612 [Bifidobacterium dentium ATCC
           27678]
          Length = 497

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 30/210 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G++NAGKSSL N L      +   +  T    +      +G L    DT G     
Sbjct: 279 VAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRARAKDGRLYAYVDTVGFVRRL 338

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI--------SFPKNIDFIF 324
                E  K T  EV  ADLI+ +          +I++  ++        + P  + F  
Sbjct: 339 PTQLIEAFKSTLEEVAEADLIVHVVDGSHPDPFSQIDAVNDVLADIDGVGAIPTIVAF-- 396

Query: 325 IGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
              KSDL      E         +++S+++GEG++EL   I+S+L      +   +P   
Sbjct: 397 --NKSDLMGEAVRERIEALMPDAYVVSAYSGEGVDELRTGIESMLPTPNVHVEALLPYSA 454

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
             L  +S+   Y ++ ++  +D G+ + AE
Sbjct: 455 GSL--VSRVREYGKVLAVEYRDDGMMLRAE 482


>gi|163736360|ref|ZP_02143779.1| GTP-binding protein, HSR1-related [Phaeobacter gallaeciensis BS107]
 gi|161390230|gb|EDQ14580.1| GTP-binding protein, HSR1-related [Phaeobacter gallaeciensis BS107]
          Length = 423

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 30/170 (17%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y IV L G++NAGKS+LFN L   +V +  D+   T D     + L +G  + +SDT G 
Sbjct: 202 YPIVALVGYTNAGKSTLFNRLTGAEV-MAKDMLFATLDPTMRRVQLPDGPEIILSDTVGF 260

Query: 278 RETDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF----------- 324
               D+  +     + T  EV  AD+++ +++I+  +  +   +++ I            
Sbjct: 261 --ISDLPTELVAAFRATLEEVLAADVVVHVRDISHDETQNQAADVESILASLGVDDSRAR 318

Query: 325 --IGTKSDLYSTYTEEYD----------HLISSFTGEGLEELINKIKSIL 362
             +  K DL      E            H IS+ +GEGLE+L+  I S L
Sbjct: 319 LEVWNKLDLLDDEQAEARRQRAEREDGIHAISAISGEGLEDLLADITSQL 368


>gi|188582188|ref|YP_001925633.1| GTP-binding proten HflX [Methylobacterium populi BJ001]
 gi|179345686|gb|ACB81098.1| GTP-binding proten HflX [Methylobacterium populi BJ001]
          Length = 471

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 45/195 (23%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD--------LEGY 267
           R  Y IV L G++NAGKS+LFNAL K +V          +D+L   LD          G 
Sbjct: 225 RVPYPIVALVGYTNAGKSTLFNALTKAEV--------RAQDMLFATLDPTARATKLPHGE 276

Query: 268 LVKISDTAG------------IRET-DDIVEKE------GIKRTFLEVENADLILLLKEI 308
            V +SDT G             R T +D++E +       +     + +  D+  +L+E+
Sbjct: 277 TVILSDTVGFISDLPTSLIAAFRATLEDVIEADILLHVRDVSHGDTQAQAEDVEGVLREL 336

Query: 309 ----NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEELINKIK 359
               ++++ I      D +  G ++ L +             L+S+ TGEGL  L  +I+
Sbjct: 337 GIEPDAERIIEVWNKADLLDDGERTRLLNLSAAHRGAGPAPILVSALTGEGLPALAERIE 396

Query: 360 SILSNKFKKLPFSIP 374
             ++        ++P
Sbjct: 397 GQVARARSTFAVTLP 411


>gi|118473995|ref|YP_888765.1| GTP-binding protein Era [Mycobacterium smegmatis str. MC2 155]
 gi|118175282|gb|ABK76178.1| GTP-binding protein Era [Mycobacterium smegmatis str. MC2 155]
          Length = 301

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + VAI ++ P TTR  +   +  E + + + DT G
Sbjct: 7   RSGF-VCFVGRPNTGKSTLTNALVGQKVAITSNRPQTTRHTIRGIVHREDFQIILVDTPG 65

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ +   + +K T+ EV+
Sbjct: 66  LHRPRTLLGQRLNDLVKDTYSEVD 89


>gi|146299638|ref|YP_001194229.1| GTP-binding protein Era [Flavobacterium johnsoniae UW101]
 gi|146154056|gb|ABQ04910.1| GTP-binding protein Era [Flavobacterium johnsoniae UW101]
          Length = 295

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 48/85 (56%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +    
Sbjct: 12  IIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQIVLSDTPGIIKPAYE 71

Query: 284 VEKEGIKRTFLEVENADLILLLKEI 308
           +++  +       E+AD+++ + EI
Sbjct: 72  MQESMMNFVKSAFEDADILVYMVEI 96


>gi|321309633|ref|YP_004191962.1| GTP binding protein EngB [Mycoplasma haemofelis str. Langford 1]
 gi|319801477|emb|CBY92123.1| GTP binding protein EngB [Mycoplasma haemofelis str. Langford 1]
          Length = 183

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           ++G SNAGKS+L N+LAK  +A  +  PG TR +   D D
Sbjct: 24  LIGPSNAGKSTLINSLAKAKIAKTSKSPGKTRTINFYDFD 63


>gi|310641521|ref|YP_003946279.1| gtpase family protein [Paenibacillus polymyxa SC2]
 gi|309246471|gb|ADO56038.1| GTPase family protein [Paenibacillus polymyxa SC2]
          Length = 289

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           L LK  I   IS+G     IR     +I+G  N GKS+L N +A +++A   D PG T+
Sbjct: 105 LLLKEKIDRQISKGMNPRPIRA----LIVGIPNVGKSTLINRMAGRNIAATGDRPGVTK 159


>gi|308173703|ref|YP_003920408.1| GTP-binding protein protease modulator [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606567|emb|CBI42938.1| putative GTP-binding protein protease modulator [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553363|gb|AEB23855.1| GTP-binding protein protease modulator [Bacillus amyloliquefaciens
           TA208]
          Length = 420

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +NG  +  ++G++NAGKS+ FN L   D +   D+   T D +T  + L  GY V +SDT
Sbjct: 197 KNGVLQAALVGYTNAGKSTWFNKLTSSD-SYEEDLLFATLDPMTRKMALPSGYSVLLSDT 255

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          + T  EV+ ADLI+
Sbjct: 256 VGFIQDLPTTLIAAFRSTLEEVKEADLII 284


>gi|225872683|ref|YP_002754140.1| putative GTP-binding protein HflX [Acidobacterium capsulatum ATCC
           51196]
 gi|225792080|gb|ACO32170.1| putative GTP-binding protein HflX [Acidobacterium capsulatum ATCC
           51196]
          Length = 432

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 33/167 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL------VKISDTA 275
           + ++G++NAGKS+LFNAL    V        ++R   T+D  L   +      V +SDT 
Sbjct: 212 VALVGYTNAGKSTLFNALTGAGVL------ASSRMFATLDPKLRAIVLPSRRKVLLSDTV 265

Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---------- 324
           G IR+    +     + T  EV+ A+++L +++ +S         +  +           
Sbjct: 266 GFIRDLPPTL-ISSFRATLEEVQKAEVLLHVQDCSSATREEHRAEVKHVLAELGAGDKPQ 324

Query: 325 --IGTKSDLYSTYTEE-------YDHLISSFTGEGLEELINKIKSIL 362
             +  K DL S   +E           IS+ TG GLE+L+ +I   L
Sbjct: 325 IEVLNKVDLLSPEEQEGLRSGHGRPMAISARTGMGLEDLLERIDEAL 371


>gi|217964585|ref|YP_002350263.1| GTPase family protein [Listeria monocytogenes HCC23]
 gi|290894531|ref|ZP_06557481.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J2-071]
 gi|217333855|gb|ACK39649.1| GTPase family protein [Listeria monocytogenes HCC23]
 gi|290555912|gb|EFD89476.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J2-071]
 gi|307570851|emb|CAR84030.1| GTPase family protein [Listeria monocytogenes L99]
          Length = 287

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKV---GKTLELLDTPGI 175


>gi|159044115|ref|YP_001532909.1| GTP-binding protein [Dinoroseobacter shibae DFL 12]
 gi|157911875|gb|ABV93308.1| GTP-binding protein [Dinoroseobacter shibae DFL 12]
          Length = 415

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 26/169 (15%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y IV L G++NAGKS+LFN L   +V +  D+   T D     L L +G  V +SDT G 
Sbjct: 191 YPIVALVGYTNAGKSTLFNHLTGAEV-LAKDMLFATLDPTMRALKLPDGLEVILSDTVGF 249

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI----------------------NSKKEIS 315
             +         + T  EV +ADLIL +++I                      + +  I 
Sbjct: 250 ISSLPTELVAAFRATLEEVLDADLILHVRDIAHPDSAAQAEDVHKILEALGVKDERPMIE 309

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILS 363
               +D +       L ++   + D L IS+ +GEG + L   I + L+
Sbjct: 310 VWNKLDLLPEAEAEALRTSAARQDDVLAISALSGEGFDTLQAAISARLT 358


>gi|289826239|ref|ZP_06545351.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 40

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 26/38 (68%)

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 3   NVLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 40


>gi|261405364|ref|YP_003241605.1| ribosome biogenesis GTP-binding protein YsxC [Paenibacillus sp.
           Y412MC10]
 gi|261281827|gb|ACX63798.1| ribosome biogenesis GTP-binding protein YsxC [Paenibacillus sp.
           Y412MC10]
          Length = 214

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 11/121 (9%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGI 277
           +I + G SN GKSSL N + ++K++A  +  PG T+ +    ++ + YLV       A +
Sbjct: 25  EIALAGRSNVGKSSLINRMISRKNLARTSATPGKTQQLNYYRVNDDLYLVDFPGYGYAKV 84

Query: 278 RETDDIVEKEGIKRTFLEVENADLILL---LKEINSKKEISFPK-----NIDFIFIGTKS 329
            +T      E I+R  L  E   L+LL   ++   SK +IS  +     N     + TK+
Sbjct: 85  SKTQRAAFGEMIERYLLSREELKLVLLIVDMRHPPSKDDISMYEWLQHYNRPVCVVATKA 144

Query: 330 D 330
           D
Sbjct: 145 D 145


>gi|86608744|ref|YP_477506.1| GTP-binding protein Era [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557286|gb|ABD02243.1| GTP-binding protein Era [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 207 ISQGKLGEI--IRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           +S G+L  I     G+K     ++G  N GKS+L NAL  + VAI + +  TTR+ L   
Sbjct: 51  VSSGELSAIPVAPPGFKSGFAALIGRPNVGKSTLLNALVGQKVAITSPVAQTTRNRLQGI 110

Query: 262 LDLEGYLVKISDTAGIRE 279
           L L    +   DT GI +
Sbjct: 111 LSLPQAQIIWVDTPGIHK 128


>gi|319790441|ref|YP_004152074.1| ribosome biogenesis GTP-binding protein YsxC [Thermovibrio
           ammonificans HB-1]
 gi|317114943|gb|ADU97433.1| ribosome biogenesis GTP-binding protein YsxC [Thermovibrio
           ammonificans HB-1]
          Length = 194

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 28/183 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDV---LTID----LDLEGY---LVK 270
           +  +G SN GKSSL NA+A    +A V+  PG TR +   L  D    +DL GY    V 
Sbjct: 26  VAFVGRSNVGKSSLLNAVANNFKLAKVSSQPGKTRSINFYLVNDRFFLVDLPGYGFAKVP 85

Query: 271 ISDTAGIRETDD--IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK 328
           + +    RE  +  +  ++ +K  FL V++       K   ++K++   + +DF  I   
Sbjct: 86  LKEQQRWRELIESYLKGRDRLKGVFLLVDS-------KVGPTEKDLQMKEWLDFFGIP-- 136

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
              Y+    + D L +S     LEE I   K++    FK +PFS  + +     L +   
Sbjct: 137 ---YTVVATKVDRLKAS-QRRNLEERIK--KALGGGDFKVIPFSAKTREGREVLLREIFN 190

Query: 389 YLE 391
           Y+E
Sbjct: 191 YIE 193


>gi|325285624|ref|YP_004261414.1| GTP-binding protein Era-like-protein [Cellulophaga lytica DSM 7489]
 gi|324321078|gb|ADY28543.1| GTP-binding protein Era-like-protein [Cellulophaga lytica DSM 7489]
          Length = 294

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 48/88 (54%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ + + V +SDT GI +    
Sbjct: 10  IIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGDDFQVILSDTPGIIKPAYE 69

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311
           ++   +       E+AD+++ + EI  K
Sbjct: 70  LQSSMMDFVKTAFEDADILIYMVEIGEK 97


>gi|315222957|ref|ZP_07864836.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           anginosus F0211]
 gi|315187907|gb|EFU21643.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           anginosus F0211]
          Length = 283

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 11/82 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-- 255
            +K  I+    +G   E +R     +I+G  NAGKS+L N LA K +A+  + PG T+  
Sbjct: 104 LMKEKIARQKERGIQIETLRT----MIIGIPNAGKSTLMNRLAGKKIAVTGNKPGVTKGQ 159

Query: 256 DVLTIDLDLEGYLVKISDTAGI 277
             L  + DLE     I DT GI
Sbjct: 160 QWLKSNKDLE-----ILDTPGI 176


>gi|306822413|ref|ZP_07455791.1| GTP-binding protein HflX [Bifidobacterium dentium ATCC 27679]
 gi|309802505|ref|ZP_07696611.1| GTP-binding protein HflX [Bifidobacterium dentium JCVIHMP022]
 gi|304553958|gb|EFM41867.1| GTP-binding protein HflX [Bifidobacterium dentium ATCC 27679]
 gi|308220905|gb|EFO77211.1| GTP-binding protein HflX [Bifidobacterium dentium JCVIHMP022]
          Length = 497

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 30/210 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G++NAGKSSL N L      +   +  T    +      +G L    DT G     
Sbjct: 279 VAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRARAKDGRLYAYVDTVGFVRRL 338

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI--------SFPKNIDFIF 324
                E  K T  EV  ADLI+ +          +I++  ++        + P  + F  
Sbjct: 339 PTQLIEAFKSTLEEVAEADLIVHVVDGSHPDPFSQIDAVNDVLADIDGVGAIPTIVAF-- 396

Query: 325 IGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
              KSDL      E         +++S+++GEG++EL   I+S+L      +   +P   
Sbjct: 397 --NKSDLMGEAVRERIEALMPDAYVVSAYSGEGVDELRTGIESMLPTPNVHVEALLPYSA 454

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
             L  +S+   Y ++ ++  +D G+ + AE
Sbjct: 455 GSL--VSRVREYGKVLAVEYRDDGMMLRAE 482


>gi|221632863|ref|YP_002522085.1| putative GTPase [Thermomicrobium roseum DSM 5159]
 gi|221155423|gb|ACM04550.1| putative GTPase of unknown function subfamily [Thermomicrobium
           roseum DSM 5159]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 25/167 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I ++G++NAGKS+L NAL   DV +  D    T D  T  L L +  +  ++DT G    
Sbjct: 196 IALVGYTNAGKSTLLNALTGADV-LAADKLFATLDPTTRRLRLSDSQVALLTDTVGFIHK 254

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT--EE 338
                    + T  E+ +A L+L + +I   K       +  +     +D Y T T   +
Sbjct: 255 LPTTLVAAFRATLEEILDAHLLLHVVDITHPKAAEQAAAVRQVLRELGADRYPTITVLNK 314

Query: 339 YDHL---------------------ISSFTGEGLEELINKIKSILSN 364
            D L                     +S+ TG GLE L ++I   L +
Sbjct: 315 IDRLEPTIDPDRLARELDIPTNAVFVSAATGYGLETLRDRIARTLRD 361


>gi|163849524|ref|YP_001637567.1| GTP-binding proten HflX [Methylobacterium extorquens PA1]
 gi|163661129|gb|ABY28496.1| GTP-binding proten HflX [Methylobacterium extorquens PA1]
          Length = 474

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 37/194 (19%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y IV L G++NAGKS+LFNAL +  V +  D+   T D       L  G  V +SDT
Sbjct: 227 RVPYPIVALVGYTNAGKSTLFNALTEAQV-VAQDMLFATLDPTARATKLPHGETVILSDT 285

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNID 321
            G             + T  +V  AD++L +++I+                E+    + D
Sbjct: 286 VGFISDLPTALIAAFRATLEDVIEADILLHVRDISHADTEAQAEDVGHVLDELGIRSHAD 345

Query: 322 FIF-IGTKSDLYSTYTE--------------EYDH------LISSFTGEGLEELINKIKS 360
            I  +  K+D+                      DH      L+S+ TGEGL  L ++I++
Sbjct: 346 RIIEVWNKADVLDKAERTRLLNLSSKGEGQTRNDHDSSAPVLVSALTGEGLSALTSRIEA 405

Query: 361 ILSNKFKKLPFSIP 374
            ++         +P
Sbjct: 406 RIARSRSTFAVVLP 419


>gi|145350092|ref|XP_001419457.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579688|gb|ABO97750.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 416

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 12/88 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTID-----LDLEGYLVKISDT 274
           I   G SN GKSSL NAL    VA  +D+PG T+  +  ++D     +DL GY    +  
Sbjct: 109 IAFAGRSNVGKSSLINALTLSSVARSSDVPGKTQSLNFYSMDERIRLVDLPGYGFAFAKQ 168

Query: 275 AGIRETDDIVEK-----EGIKRTFLEVE 297
             +   +++++K       +KR +L ++
Sbjct: 169 HRVESWNELMDKYLTSRPNLKRVYLVID 196


>gi|85373794|ref|YP_457856.1| GTP-binding protein Era [Erythrobacter litoralis HTCC2594]
 gi|122544698|sp|Q2NB82|ERA_ERYLH RecName: Full=GTPase Era
 gi|84786877|gb|ABC63059.1| GTPase [Erythrobacter litoralis HTCC2594]
          Length = 304

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 27/175 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDL----DLEGYLVKISDTAG 276
           + +LG  NAGKS+L N L  + VAI +    TTR  +L I L    D +  ++ + DT G
Sbjct: 11  VAVLGAPNAGKSTLVNQLVGQKVAITSAKAQTTRARMLGIALHESDDAKTQMI-LVDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF--------IFIGTK 328
           I      +++  +   +   E+AD +LLL +   ++       ++         I +  K
Sbjct: 70  IFAPRRRLDRAMVSAAWEGAESADAVLLLVDPVKQRRHELEPLLESLKDRPERKILVLNK 129

Query: 329 SD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D         L    +++ D    + +S+ TG+G+ E+ N + +++       P
Sbjct: 130 VDVAKKEPLLALAQDLSQKVDFAEIYFVSALTGDGVPEMKNALAALMPEGVWHYP 184


>gi|46202523|ref|ZP_00053076.2| COG2262: GTPases [Magnetospirillum magnetotacticum MS-1]
          Length = 421

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 28/182 (15%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG- 276
           Y IV L G++NAGKS+LFN L + +V +  D+   T D     L L  G  + +SDT G 
Sbjct: 191 YPIVALVGYTNAGKSTLFNQLTRAEV-LAKDMLFATLDPTMRTLVLPSGRKIILSDTVGF 249

Query: 277 ------------------IRETDDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKE 313
                             + E D +V    I     E ++AD+  +LKE+       +  
Sbjct: 250 ISDLPHELVAAFRATLEEVLEADIVVHVRDISHPDTEAQSADVDTVLKELGLAEVVDRGL 309

Query: 314 ISFPKNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +     ID +    + + L      +    +S+ TG+G++EL+ ++   L +  + +  +
Sbjct: 310 VEALNKIDLLDEERRHEVLNQARRRDGVMALSAITGQGVDELLAELDRRLGHARETIDVA 369

Query: 373 IP 374
           +P
Sbjct: 370 LP 371


>gi|313897932|ref|ZP_07831473.1| ferrous iron transport protein B [Clostridium sp. HGF2]
 gi|312957467|gb|EFR39094.1| ferrous iron transport protein B [Clostridium sp. HGF2]
          Length = 715

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 30/169 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VKISDT 274
           Y+I + G+ N GK+++FNAL   +   V + PG T +        EG L     + I+D 
Sbjct: 2   YRIALAGNPNCGKTTMFNALTGSN-QYVGNWPGVTVE------KKEGKLKGHKDIVITDL 54

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPKN-----IDFIFIGTK 328
            GI         E + R +L  E  DLI+ ++   N ++ +          I  +     
Sbjct: 55  PGIYSLSPYSLDEVVARNYLVEEQPDLIINIIDATNLERNLYLTTQLQETGIPVVAALNM 114

Query: 329 SDLYSTYTEEYDHL------------ISSFTGEGLEELINKIKSILSNK 365
            DL      E +              +S+    GL+ELI K   +LSNK
Sbjct: 115 MDLMQQNKTEVNTCKLSDLLNIPVVEVSALKNRGLDELIQKAVGMLSNK 163


>gi|300721489|ref|YP_003710764.1| putative GTPase [Xenorhabdus nematophila ATCC 19061]
 gi|297627981|emb|CBJ88530.1| putative GTPase subunit of protease with nucleoside triP hydrolase
           domain, together with HflC-HflK involved in stability of
           phage lambda cII repressor [Xenorhabdus nematophila ATCC
           19061]
          Length = 426

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 41/216 (18%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ +  IL   + +     QG+      +   + ++G++NAGKSSLFN++    V     
Sbjct: 168 RDKIKQILGRLSKVEKQREQGRQARNKADIPTVSLVGYTNAGKSSLFNSITSAKVYAADQ 227

Query: 250 IPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL--- 303
           +  T    L  ID+D  G +V ++DT G IR    D+V     K T  E   A L+L   
Sbjct: 228 LFATLDPTLRRIDVDDVGTVV-LADTVGFIRHLPHDLV--AAFKATLQETRQAKLLLHVV 284

Query: 304 ----------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------ 341
                           +L+EI S +       I  + +  K D+   +T   D       
Sbjct: 285 DAADHRLDENIIAVDSVLEEIESNE-------IPSLMVMNKIDMLEDFTPRIDRDEENRP 337

Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               +S+ TGEG+  L+  +   LS +       +P
Sbjct: 338 VRVWLSAQTGEGISLLLQALTERLSGETAHYELHLP 373


>gi|315282092|ref|ZP_07870580.1| ribosome biogenesis GTP-binding protein YlqF [Listeria marthii FSL
           S4-120]
 gi|313614262|gb|EFR87918.1| ribosome biogenesis GTP-binding protein YlqF [Listeria marthii FSL
           S4-120]
          Length = 288

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKV---GKTLELLDTPGI 175


>gi|311068267|ref|YP_003973190.1| putative GTP-binding protein protease modulator [Bacillus
           atrophaeus 1942]
 gi|310868784|gb|ADP32259.1| putative GTP-binding protein protease modulator [Bacillus
           atrophaeus 1942]
          Length = 420

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +NG  ++ ++G++NAGKS+ FN L   D +   D+   T D +T  + L  GY V +SDT
Sbjct: 197 KNGVLQLALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLSDT 255

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          + T  EV+ AD+IL
Sbjct: 256 VGFIQDLPTTLIAAFRSTLEEVKEADVIL 284


>gi|309801224|ref|ZP_07695353.1| ribosome biogenesis GTPase Era [Bifidobacterium dentium JCVIHMP022]
 gi|308222113|gb|EFO78396.1| ribosome biogenesis GTPase Era [Bifidobacterium dentium JCVIHMP022]
          Length = 327

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L  +   + + DT G
Sbjct: 18  RSGF-VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPG 76

Query: 277 I 277
           I
Sbjct: 77  I 77


>gi|325680801|ref|ZP_08160339.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 8]
 gi|324107581|gb|EGC01859.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 8]
          Length = 297

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L   I    ++G  G  IR    ++I+G  N GKSS  N LA   +A V D PG TR  
Sbjct: 107 LLSEQIEKWDTRGMTGRPIR----MMIVGIPNVGKSSFINRLAGAKLAKVEDRPGVTRGK 162

Query: 258 LTIDLDLEGYLVKISDTAGI 277
             + LD EG+  ++ D  G+
Sbjct: 163 QWVALD-EGF--ELLDMPGV 179


>gi|269941085|emb|CBI49470.1| putative GTPase [Staphylococcus aureus subsp. aureus TW20]
          Length = 366

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           IR    +  +G +N GKS+L N L      +KDV   +  PGTT D++ I LD   ++  
Sbjct: 157 IRENEDVYTVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215

Query: 271 ISDTAGI 277
             DT GI
Sbjct: 216 --DTPGI 220


>gi|302555069|ref|ZP_07307411.1| ribosome small subunit-dependent GTPase A [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472687|gb|EFL35780.1| ribosome small subunit-dependent GTPase A [Streptomyces
           viridochromogenes DSM 40736]
          Length = 368

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIV---TDIPGTTRDVLTID--LDLEGYLVK 270
           I  G   V+LG S AGKS+L NAL  +DV  V    D+ G  R   T    L L G  V 
Sbjct: 198 IAGGGTSVLLGQSGAGKSTLANALLGEDVMTVHATRDVDGKGRHTTTTRNLLALPGGGVL 257

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           I DT G+R       + G+ + F E+E+
Sbjct: 258 I-DTPGLRGVGLWDAETGVGQVFSEIED 284


>gi|319787579|ref|YP_004147054.1| GTP-binding protein Era [Pseudoxanthomonas suwonensis 11-1]
 gi|317466091|gb|ADV27823.1| GTP-binding protein Era [Pseudoxanthomonas suwonensis 11-1]
          Length = 307

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NAL    V+IV++ P TTR  L     + G  + + DT G+   +
Sbjct: 15  VAVVGRPNVGKSTLVNALVGAKVSIVSNRPQTTRHRLLGIATVPGGQMLLVDTPGLHRQE 74

Query: 282 DIVEKEGIKRTFLE-----VENADLILLLKEINSKKE 313
              +   + R         VE+ D  +L+ E     E
Sbjct: 75  GRFKASAMSRVMNRTARGAVEDVDAAVLVVEAGRWDE 111


>gi|149371535|ref|ZP_01890951.1| putative GTP-binding protein [unidentified eubacterium SCB49]
 gi|149355162|gb|EDM43722.1| putative GTP-binding protein [unidentified eubacterium SCB49]
          Length = 293

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +    
Sbjct: 10  IIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQMLLSDTPGIIKPAYE 69

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311
           ++   +       E+AD++L L E+  K
Sbjct: 70  LQASMMDFVKSAFEDADVLLYLVELGEK 97


>gi|299136416|ref|ZP_07029599.1| GTP-binding proten HflX [Acidobacterium sp. MP5ACTX8]
 gi|298600931|gb|EFI57086.1| GTP-binding proten HflX [Acidobacterium sp. MP5ACTX8]
          Length = 485

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 27/174 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL------VKISDTA 275
           + ++G++NAGKS+LFN+L   +V        + R   T+D  L          V +SDT 
Sbjct: 264 VALVGYTNAGKSTLFNSLTGAEVL------ASERMFATLDPKLRQLTLPSRRKVLLSDTV 317

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF----------- 324
           G             + T  EVE A+L+L +++  S         ++ +            
Sbjct: 318 GFLRNLPHALVTSFRATLEEVERAELLLHVRDAASPTLDEQRSQVEAVLSELNVGEKQTL 377

Query: 325 -IGTKSDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSIL-SNKFKKLPFSIP 374
            +  K+DL    T      I  S  TG GL++L++ I + L S+   ++ F IP
Sbjct: 378 QVLNKTDLLPPETPFAPGTIPVSGLTGAGLDDLLHAIDAALTSDPLIEVRFRIP 431


>gi|300701764|ref|XP_002995023.1| hypothetical protein NCER_102246 [Nosema ceranae BRL01]
 gi|239603625|gb|EEQ81352.1| hypothetical protein NCER_102246 [Nosema ceranae BRL01]
          Length = 407

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N+GKSS+ N L  K V  V  +PG T+    I L    YL+       I + +  V
Sbjct: 262 VGYPNSGKSSIINTLRNKQVCNVAPVPGETKVWQYITLTRSIYLIDCPGVVPIPDFEQAV 321

Query: 285 EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
            K  I+   L  EN +  + +     K EIS    IDF  +    DL+  ++ +Y
Sbjct: 322 FKGAIRVENL--ENPEYYVEILANKYKTEISKLYKIDFRDV---DDLFEKFSLKY 371


>gi|297199566|ref|ZP_06916963.1| GTP-binding protein Era [Streptomyces sviceus ATCC 29083]
 gi|197713506|gb|EDY57540.1| GTP-binding protein Era [Streptomyces sviceus ATCC 29083]
          Length = 322

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 16/132 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   + G  NAGKS+L NAL    VAI  + P TTR  +   +  E   + + DT G
Sbjct: 22  RAGFACFV-GRPNAGKSTLTNALVGHKVAITANQPQTTRHTVRGIVHREDAQLILVDTPG 80

Query: 277 IRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIF 324
           + +   ++ +   + ++ T+ EV   D+I      N K         KE++  K    + 
Sbjct: 81  LHKPRTLLGERLNDVVRTTWAEV---DVIGFCLPANEKLGPGDRFIAKELAGIKKSPKVA 137

Query: 325 IGTKSDLYSTYT 336
           I TK+DL  + T
Sbjct: 138 IITKTDLVDSKT 149


>gi|146329627|ref|YP_001209600.1| GTP-binding protein Era [Dichelobacter nodosus VCS1703A]
 gi|146233097|gb|ABQ14075.1| GTP-binding protein Era [Dichelobacter nodosus VCS1703A]
          Length = 299

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           I ++G  N GKS+L N L  + +AI +  P TTR  L      +   +   DT GI R+ 
Sbjct: 8   IAVVGRPNVGKSTLINHLLGQKIAITSRKPQTTRQALLGIYSEDDVQMVFVDTPGIHRDG 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
              + ++  +  +  + + D+IL + E+   +E
Sbjct: 68  KKAINRQMNRAAWQSMHDVDVILHVSEVKRWEE 100


>gi|148653665|ref|YP_001280758.1| HSR1-like GTP-binding protein [Psychrobacter sp. PRwf-1]
 gi|148572749|gb|ABQ94808.1| GTP-binding protein, HSR1-related [Psychrobacter sp. PRwf-1]
          Length = 481

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 108/257 (42%), Gaps = 57/257 (22%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +QG+      +   I ++G++NAGKSSLFN L  +D+     +  T    L   +D +G 
Sbjct: 188 AQGRAKRQKSDVLTISLVGYTNAGKSSLFNRLVDEDIYAADQLFATLDPTLR-RMDWQGV 246

Query: 268 -LVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEI- 314
             V + DT G +R    ++V  E    T  E   ADL+L         + ++I + KE+ 
Sbjct: 247 GRVVLVDTVGFVRHLPHELV--ESFHATLEETLEADLLLHVIDSSSPDMHEQIKAVKEVL 304

Query: 315 -------------------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
                                P  I++   G  S +Y          +S+    G+  L 
Sbjct: 305 SEIDNHVPVLNVYNKIDITGEPAQINYSGPGVPSRVY----------VSAKADLGMSMLH 354

Query: 356 NKIKSILSNKFK----KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
             ++ +L+ K       LPF+  + K  LY L      +E  S +E+  G +++   LRL
Sbjct: 355 TAVQQLLTGKLNTFEITLPFNAGNLKNELYRLD----VVEQESYDEQ--GHEVL--TLRL 406

Query: 412 ASVSLGKITGCVDVEQL 428
            S  L ++ G  +++ L
Sbjct: 407 PSDKLQQLLGQANIDPL 423


>gi|107104042|ref|ZP_01367960.1| hypothetical protein PaerPA_01005115 [Pseudomonas aeruginosa PACS2]
          Length = 419

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFNAL   +V     +  T    L  + 
Sbjct: 168 VRSQREQARRGRKRADIPAVSLVGYTNAGKSTLFNALTASEVYAANQLFATLDPTLRRLQ 227

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           LD  G +V ++DT G IR     +  E  + T  E  NADL+L
Sbjct: 228 LDDLGPVV-LADTVGFIRHLPHKL-VEAFRATLEESSNADLLL 268


>gi|325261977|ref|ZP_08128715.1| GTP-binding protein Era [Clostridium sp. D5]
 gi|324033431|gb|EGB94708.1| GTP-binding protein Era [Clostridium sp. D5]
          Length = 299

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 216 IRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           ++  YK   + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   +   
Sbjct: 1   MKENYKSGFVTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFV 60

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           DT GI +  + + +  +      +   D++L L E
Sbjct: 61  DTPGIHKAKNKLGEYMVNVAERTLNEVDVVLWLVE 95


>gi|289423889|ref|ZP_06425682.1| GTP-binding protein Era [Peptostreptococcus anaerobius 653-L]
 gi|289155666|gb|EFD04338.1| GTP-binding protein Era [Peptostreptococcus anaerobius 653-L]
          Length = 299

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N +  + +AI++D P TTR+ +  +  D E  +V   DT GI + 
Sbjct: 8   VSIVGRPNVGKSTLMNDMVGEKIAIMSDKPQTTRNTIQAVYTDEEAQIV-FMDTPGIHKP 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            + + +  +K      +N D I+ +
Sbjct: 67  KNKLGEMMVKSASDAFKNVDSIIFV 91


>gi|253996604|ref|YP_003048668.1| GTP-binding protein HSR1-like [Methylotenera mobilis JLW8]
 gi|253983283|gb|ACT48141.1| GTP-binding protein HSR1-related [Methylotenera mobilis JLW8]
          Length = 315

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++I+G  N GKS+L NAL  + VA V D P  T+     DLD     + I+DT G+
Sbjct: 118 RMMIMGIPNVGKSTLMNALLNRRVAKVGDEPAVTKSQQRFDLD---DTMSITDTPGM 171


>gi|296125394|ref|YP_003632646.1| GTP-binding proten HflX [Brachyspira murdochii DSM 12563]
 gi|296017210|gb|ADG70447.1| GTP-binding proten HflX [Brachyspira murdochii DSM 12563]
          Length = 371

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT----TRDV-LTIDLDLEGYLVKIS 272
           N +++ I+G++NAGKS+LFN L K+ V +   +  T    TR + L  D  +E     IS
Sbjct: 201 NAFRVAIVGYTNAGKSTLFNLLCKESVYVEDKLFATLDTHTRKLYLGDDTPVEAI---IS 257

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           DT G  +          K T  EV  ADL+L L
Sbjct: 258 DTVGFIDRLPHTLVASFKSTLSEVVEADLLLHL 290


>gi|171743043|ref|ZP_02918850.1| hypothetical protein BIFDEN_02168 [Bifidobacterium dentium ATCC
           27678]
 gi|283455946|ref|YP_003360510.1| GTP-binding protein Era [Bifidobacterium dentium Bd1]
 gi|171278657|gb|EDT46318.1| hypothetical protein BIFDEN_02168 [Bifidobacterium dentium ATCC
           27678]
 gi|283102580|gb|ADB09686.1| GTP-binding protein Era [Bifidobacterium dentium Bd1]
          Length = 333

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L  +   + + DT G
Sbjct: 24  RSGF-VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPG 82

Query: 277 I 277
           I
Sbjct: 83  I 83


>gi|189347079|ref|YP_001943608.1| GTP-binding proten HflX [Chlorobium limicola DSM 245]
 gi|189341226|gb|ACD90629.1| GTP-binding proten HflX [Chlorobium limicola DSM 245]
          Length = 434

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG-IRE 279
           + ++G++NAGKS+L NAL  +  A   +    T D  T  L+L+   LV +SDT G IR+
Sbjct: 204 VALVGYTNAGKSTLMNALCPEAEAFAENRLFATLDTKTRRLELKINKLVLLSDTVGFIRK 263

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL 303
              D+V  E  K T  EV  AD +L
Sbjct: 264 LPHDLV--ESFKSTLDEVLQADFLL 286


>gi|25011102|ref|NP_735497.1| ribosomal biogenesis GTPase [Streptococcus agalactiae NEM316]
 gi|76798265|ref|ZP_00780513.1| GTP-binding protein [Streptococcus agalactiae 18RS21]
 gi|77410513|ref|ZP_00786874.1| GTP-binding protein [Streptococcus agalactiae CJB111]
 gi|77413767|ref|ZP_00789948.1| GTP-binding protein [Streptococcus agalactiae 515]
 gi|23095501|emb|CAD46707.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586376|gb|EAO62886.1| GTP-binding protein [Streptococcus agalactiae 18RS21]
 gi|77160196|gb|EAO71326.1| GTP-binding protein [Streptococcus agalactiae 515]
 gi|77163461|gb|EAO74411.1| GTP-binding protein [Streptococcus agalactiae CJB111]
          Length = 283

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           +S  I++ +   I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    +  
Sbjct: 105 MSDKIAKLRGRGIQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKS 164

Query: 263 DLEGYLVKISDTAGI 277
           + E   ++I DT GI
Sbjct: 165 NKE---LEILDTPGI 176


>gi|315650683|ref|ZP_07903739.1| GTP-binding protein [Eubacterium saburreum DSM 3986]
 gi|315487060|gb|EFU77386.1| GTP-binding protein [Eubacterium saburreum DSM 3986]
          Length = 415

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 23/168 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG- 276
            + + I+G++NAGKS+L N L   ++ +  D    T D  T  L L+ G  + ++DT G 
Sbjct: 198 AFNVAIVGYTNAGKSTLLNKLTDANI-LAEDKLFATLDPTTRKLKLDSGQEILVTDTVGF 256

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEISFPK-------NIDFIF 324
           IR+    +  E  K T  E + A+L++ +     +E +S+  + +         + D I 
Sbjct: 257 IRKLPHHL-IEAFKSTLEEAKYANLLIHMVDASNEEASSQMLVVYDTLRSLDVVDKDIIT 315

Query: 325 IGTKSDLYSTYTE-----EYDHLI--SSFTGEGLEELINKIKSILSNK 365
           +  K+DL     E       D ++  S+ TGEG+E+L   I++IL N+
Sbjct: 316 VFNKTDLTDKDMELPRDFHADKILRMSAKTGEGIEDLKKTIENILQNQ 363


>gi|302657717|ref|XP_003020574.1| hypothetical protein TRV_05326 [Trichophyton verrucosum HKI 0517]
 gi|291184421|gb|EFE39956.1| hypothetical protein TRV_05326 [Trichophyton verrucosum HKI 0517]
          Length = 320

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 81  RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLI---DCPG 137

Query: 277 -IRETDDIVEKEGIKRTFLEVENAD 300
            +  +++  E++ + R  + VEN +
Sbjct: 138 VVPPSNNATEEDILLRGVVRVENVE 162


>gi|119672890|ref|NP_001017840.2| ras-like protein family member 11A-like [Danio rerio]
 gi|160175884|sp|A1DZY4|RSLBL_DANRE RecName: Full=Ras-like protein family member 11A-like
 gi|118490490|gb|ABK96901.1| Ras-like family 11 member A [Danio rerio]
          Length = 253

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 17/126 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIR 278
           KIV+LG SN GK++L      K    + D    T  + +  I+LD E   +++ DT  + 
Sbjct: 38  KIVVLGASNVGKTALIVRFLTKR--FIGDYEANTGALYSRKINLDGEQVSLQVQDTPCVS 95

Query: 279 ETDD---IVEKEGIKRTFLEVENADLILLLKEINSKKEIS---------FPK-NIDFIFI 325
             DD   +  +E I R+    +   L+  + ++NS + I           P  NI  I +
Sbjct: 96  LQDDADGLYCQEQINRSIYWADGYVLVFSITDLNSYRTIQPLYQHVRRIHPSGNIPVIIV 155

Query: 326 GTKSDL 331
           G KSDL
Sbjct: 156 GNKSDL 161


>gi|15675137|ref|NP_269311.1| ribosomal biogenesis GTPase [Streptococcus pyogenes M1 GAS]
 gi|71910695|ref|YP_282245.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS5005]
 gi|13622297|gb|AAK34032.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|71853477|gb|AAZ51500.1| GTP-binding protein [Streptococcus pyogenes MGAS5005]
          Length = 282

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    +  + E   ++I DT
Sbjct: 117 IQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKE---LEILDT 173

Query: 275 AGI 277
            GI
Sbjct: 174 PGI 176


>gi|152976765|ref|YP_001376282.1| GTP-binding protein YqeH [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025517|gb|ABS23287.1| Nitric-oxide synthase [Bacillus cytotoxicus NVH 391-98]
          Length = 368

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 25/171 (14%)

Query: 203 ISSHISQG--KLGEII---RNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIP 251
           IS+   QG  +L E I   RNG  + ++G +N GKS+  N + K      ++V   +  P
Sbjct: 139 ISAAKGQGIQELAEAIEKYRNGKDVYVVGCTNVGKSTFINRMIKEFSEETENVITTSHFP 198

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           GTT D++ I LD    L    DT GI     +    G +   +     ++  ++ ++N +
Sbjct: 199 GTTLDLIDIPLDDTSSLY---DTPGIINHHQMAHYVGKQSLKIITPTKEIKPMVFQLNEE 255

Query: 312 KEISFP--KNIDFIFIGTKS---------DLYSTYTEEYDHLISSFTGEGL 351
           + + F      D++  G +S          ++ T  E+ D L     GE L
Sbjct: 256 QTLFFSGLARFDYVSGGRRSFTCYFSNRLTIHRTKLEKADQLHEKHAGELL 306


>gi|328866113|gb|EGG14499.1| Putative GTP-binding protein [Dictyostelium fasciculatum]
          Length = 525

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 28/167 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-------DLEGYLVKI--- 271
           +  +G SN GKSSL NA+  + +A  +D PG T+ +   +L       DL GY       
Sbjct: 301 VAFIGRSNVGKSSLINAITLRGLAKTSDKPGLTQSINWFELGSTLRLVDLPGYGFAFAKQ 360

Query: 272 --SDTAGIRETDDIVEKEGIKRTFLEVE--------NADLILLLKEINSKKEISFPKN-- 319
             SDT      + +  ++ +KR F+ ++        +  L+ +L + ++  +I   K   
Sbjct: 361 EKSDTWNQLSVNYLTSRKSLKRVFVLIDSRHGFKDSDRQLLDILDKNHTHTQIVLTKTDL 420

Query: 320 IDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKIKS 360
            + + +  +  L +   + Y H      ++SS T +G+ EL   IKS
Sbjct: 421 SEQLDLAKRFTLVANEIKHYRHVQDPILMVSSKTYKGIAELDTIIKS 467


>gi|312866371|ref|ZP_07726589.1| ribosome biogenesis GTPase YqeH [Streptococcus downei F0415]
 gi|311098065|gb|EFQ56291.1| ribosome biogenesis GTPase YqeH [Streptococcus downei F0415]
          Length = 368

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R G  + ++G +N GKS+L NA+ K     +++   +  PGTT D + I LD   Y 
Sbjct: 158 EELRAGRDVYVVGVTNVGKSTLINAIIKEITGNQEIITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGI 277
             I DT GI
Sbjct: 217 --IFDTPGI 223


>gi|157363426|ref|YP_001470193.1| ferrous iron transport protein B [Thermotoga lettingae TMO]
 gi|157314030|gb|ABV33129.1| ferrous iron transport protein B [Thermotoga lettingae TMO]
          Length = 639

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 19/171 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ + G+ N GK+SLFNAL         +  G T D+     + +G  +  +D  G    
Sbjct: 4   RVALCGNPNVGKTSLFNALTGLR-QYTANWAGVTVDIKEGIRNWKGMQITFTDLPGTYSL 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFI------GTK 328
                 E I R +L     D++L++ +  S K+  +        ++  I +        K
Sbjct: 63  SSFSLDEKIARDYLLYNTPDILLVVADSLSLKQGLYLFLEAAELDVKIILVVNAIDEAKK 122

Query: 329 SDLYSTYTEEYDHL------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           S ++   +E   HL       S+ TGEG+ EL++ I  + +++ K + F++
Sbjct: 123 SGIHIDRSELSKHLGVPVILTSAVTGEGINELLDSIVKVAADQKKTVRFAL 173


>gi|53804478|ref|YP_113919.1| GTP-binding protein Era [Methylococcus capsulatus str. Bath]
 gi|53758239|gb|AAU92530.1| GTP-binding protein Era [Methylococcus capsulatus str. Bath]
          Length = 293

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 3/63 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDT 274
           +++GY + ++G  N GKS+L N L  + ++IV+  P TTR  +L I  D  G ++ + DT
Sbjct: 1   MKSGY-VALVGRPNVGKSTLLNHLLGQKLSIVSRRPQTTRHRILGIKTDGRGQVIYV-DT 58

Query: 275 AGI 277
            GI
Sbjct: 59  PGI 61


>gi|326803486|ref|YP_004321304.1| ribosome biogenesis GTPase Era [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650900|gb|AEA01083.1| ribosome biogenesis GTPase Era [Aerococcus urinae ACS-120-V-Col10a]
          Length = 303

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + VAI++D   TTR+ +      +   +   DT GI +  
Sbjct: 12  VAIVGRPNVGKSTLLNHIIGQKVAIMSDKAQTTRNKIHAIYTTDEVQIVFIDTPGIHKPK 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             + +  +K  +  ++  ++IL+L  +NS ++I
Sbjct: 72  HELGEYMVKSAYSALDEVEVILML--VNSTEKI 102


>gi|288555654|ref|YP_003427589.1| GTPase YqeH [Bacillus pseudofirmus OF4]
 gi|288546814|gb|ADC50697.1| GTP-binding protein YqeH putative GTPase [Bacillus pseudofirmus
           OF4]
          Length = 370

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 86/195 (44%), Gaps = 23/195 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTR 255
           DI+S I +      +R+G  + ++G +N GKS+  N + K      + +   +  PGTT 
Sbjct: 150 DIASEIDR------LRDGRDVYVVGCTNVGKSTFINRIIKEFGGDTEQLITTSHFPGTTL 203

Query: 256 DVLTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           D++ I LD    L    DT GI    +    V+K+ +K+   + E   ++    ++N  +
Sbjct: 204 DMIDIPLDDGSALY---DTPGIINHHQMAHFVDKKELKQITPKKEIKPMVF---QLNEGQ 257

Query: 313 EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI-NKIKSILSNKFKKLPF 371
            + F     F F+  +   ++ +T   D  I     E  EEL  N +  +L+   K+   
Sbjct: 258 TLYFGGMARFDFVAGERSSFTCFTSN-DLNIHRTKREKAEELYQNHLGELLTPPGKESMV 316

Query: 372 SIPSHKRHLYHLSQT 386
             P   +H + +  T
Sbjct: 317 DFPPLVKHEFTIKDT 331


>gi|139473751|ref|YP_001128467.1| ribosomal biogenesis GTPase [Streptococcus pyogenes str. Manfredo]
 gi|134271998|emb|CAM30236.1| putative GTPase protein [Streptococcus pyogenes str. Manfredo]
          Length = 282

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    +  + E   ++I DT
Sbjct: 117 IQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKE---LEILDT 173

Query: 275 AGI 277
            GI
Sbjct: 174 PGI 176


>gi|116629756|ref|YP_814928.1| GTP-binding protein Era [Lactobacillus gasseri ATCC 33323]
 gi|116095338|gb|ABJ60490.1| GTPase [Lactobacillus gasseri ATCC 33323]
          Length = 303

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + VAI++  P TTR+ ++ I  D +  +V I DT GI + 
Sbjct: 13  VALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFI-DTPGIHKP 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + ++    K ++  ++  D++L + E
Sbjct: 72  KNKLDDFMDKSSYSALDEVDVVLFMVE 98


>gi|50914224|ref|YP_060196.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS10394]
 gi|50903298|gb|AAT87013.1| GTP-binding protein [Streptococcus pyogenes MGAS10394]
          Length = 282

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    +  + E   ++I DT
Sbjct: 117 IQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKE---LEILDT 173

Query: 275 AGI 277
            GI
Sbjct: 174 PGI 176


>gi|19746107|ref|NP_607243.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS8232]
 gi|94994427|ref|YP_602525.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS10750]
 gi|19748281|gb|AAL97742.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
 gi|94547935|gb|ABF37981.1| GTP-binding protein [Streptococcus pyogenes MGAS10750]
          Length = 282

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    +  + E   ++I DT
Sbjct: 117 IQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKE---LEILDT 173

Query: 275 AGI 277
            GI
Sbjct: 174 PGI 176


>gi|324511692|gb|ADY44861.1| Guanine nucleotide-binding protein-like protein [Ascaris suum]
          Length = 374

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G+ N GKSS+ N+L +K    +  +PG T+ +  I+LD     +++ D+ 
Sbjct: 51  IKTSIRVGVVGYPNVGKSSVINSLKRKRACSIGALPGITKQIQEIELDKH---IRLLDSP 107

Query: 276 GI 277
           G+
Sbjct: 108 GV 109


>gi|306822848|ref|ZP_07456224.1| GTP-binding protein Era [Bifidobacterium dentium ATCC 27679]
 gi|304553480|gb|EFM41391.1| GTP-binding protein Era [Bifidobacterium dentium ATCC 27679]
          Length = 333

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L  +   + + DT G
Sbjct: 24  RSGF-VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPG 82

Query: 277 I 277
           I
Sbjct: 83  I 83


>gi|284052927|ref|ZP_06383137.1| small GTP-binding protein domain-containing protein [Arthrospira
           platensis str. Paraca]
 gi|291568532|dbj|BAI90804.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 547

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 19/142 (13%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            DI +++SQG +        ++VI G  +AGK+S+ N L  + V  V    GTT +  T 
Sbjct: 120 QDIEANLSQGSI--------QVVIFGTGSAGKTSVVNGLMGEMVGRVNAPMGTTINGETY 171

Query: 261 DLDLEGY--LVKISDTAGIRET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
            L L G    + I DT GI E  +    +  + RT      ADL+L + + + ++   +P
Sbjct: 172 RLKLPGLNREILIIDTPGIGEVGEGGATRSEMARTL--ATEADLLLFVVDNDLRQSEWYP 229

Query: 318 -KNI-----DFIFIGTKSDLYS 333
            +N+       + I  K+DLY+
Sbjct: 230 LRNLAEMGKRSLLIFNKTDLYT 251


>gi|269792561|ref|YP_003317465.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100196|gb|ACZ19183.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 201

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           ++V++G SN GKSSL NA+  + +A V+  PG TR V
Sbjct: 24  EVVMVGRSNVGKSSLINAMIGQRLAKVSKTPGKTRSV 60


>gi|160945169|ref|ZP_02092395.1| hypothetical protein FAEPRAM212_02688 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442900|gb|EDP19905.1| hypothetical protein FAEPRAM212_02688 [Faecalibacterium prausnitzii
           M21/2]
          Length = 324

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N L  + VAIVT  P TTR  +T  +        + DT G+ +  
Sbjct: 31  VAVIGRPNVGKSSLTNLLVGEKVAIVTSKPQTTRTRITGVITRGPLQYVLLDTPGVHKAH 90

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
           + + K   K     + + D+ ++L E
Sbjct: 91  NKLGKRMDKTASDSIADVDVSMMLFE 116


>gi|152986375|ref|YP_001350991.1| GTP-binding proten HflX [Pseudomonas aeruginosa PA7]
 gi|150961533|gb|ABR83558.1| GTP-binding proten HflX [Pseudomonas aeruginosa PA7]
          Length = 433

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFNAL   +V     +  T    L  + 
Sbjct: 182 VRSQREQARRGRKRADIPAVSLVGYTNAGKSTLFNALTSSEVYAANQLFATLDPTLRRLQ 241

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           LD  G +V ++DT G IR     +  E  + T  E  NADL+L
Sbjct: 242 LDDLGPVV-LADTVGFIRHLPHKL-VEAFRATLEESSNADLLL 282


>gi|119512965|ref|ZP_01632026.1| Small GTP-binding protein domain protein [Nodularia spumigena
           CCY9414]
 gi|119462378|gb|EAW43354.1| Small GTP-binding protein domain protein [Nodularia spumigena
           CCY9414]
          Length = 517

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 21/223 (9%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK--ISDT 274
           R   ++V+ G  +AGK+SL NA+  + V  V    GTT+   T  L L+G   K  I+DT
Sbjct: 129 RGEIQVVVFGTGSAGKTSLVNAIMGRMVGQVNAPMGTTQVGETYCLRLKGLERKILITDT 188

Query: 275 AGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLY- 332
            GI E   +  E+E + R      +ADL+L + + N  +   +        IG +S L  
Sbjct: 189 PGILEAGVEGTEREQLAREL--ATSADLLLFVVD-NDLRRSEYEPLRSLAEIGKRSLLVL 245

Query: 333 ---STYTEEYDHLISSFTGEGLEELI--NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
                YT+E    I +   + +   I  N + +I  N     P         ++H    +
Sbjct: 246 NKTDLYTDEDKESILARLRQRVRGFIAPNDVVAIAGN-----PQPAQLETGEIFHPEPDI 300

Query: 388 RYL--EMASLNEKDCGLDIIAENLRLASVSLG-KITGCVDVEQ 427
             L   MA++   + G D++A+N+ L S+ LG +    +DV++
Sbjct: 301 IPLLRRMAAILRAE-GEDLVADNILLQSLRLGEEARNLIDVQR 342


>gi|24212844|ref|NP_710325.1| ribosome biogenesis GTP-binding protein YsxC [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45656040|ref|YP_000126.1| ribosome biogenesis GTP-binding protein YsxC [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|67460340|sp|Q72W11|ENGB_LEPIC RecName: Full=Probable GTP-binding protein EngB
 gi|67460409|sp|Q8F9P7|ENGB_LEPIN RecName: Full=Probable GTP-binding protein EngB
 gi|24193501|gb|AAN47343.1| GTPase EngB [Leptospira interrogans serovar Lai str. 56601]
 gi|45599273|gb|AAS68763.1| GTP binding protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 217

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 202 DISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTR 255
           D+    S GK  +I   G  +I   G SNAGKSSL NA L +K +A V+  PG T+
Sbjct: 15  DVEFKASYGKADQIPSQGTPQIAFAGRSNAGKSSLLNAILERKSLAKVSSTPGKTK 70


>gi|126172308|ref|YP_001048457.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella baltica
           OS155]
 gi|153002842|ref|YP_001368523.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella baltica
           OS185]
 gi|160877587|ref|YP_001556903.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella baltica
           OS195]
 gi|217975429|ref|YP_002360180.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella baltica
           OS223]
 gi|304411972|ref|ZP_07393582.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella baltica
           OS183]
 gi|307305867|ref|ZP_07585613.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella baltica
           BA175]
 gi|166225979|sp|A3CYM5|ENGB_SHEB5 RecName: Full=Probable GTP-binding protein EngB
 gi|166225980|sp|A6WUH1|ENGB_SHEB8 RecName: Full=Probable GTP-binding protein EngB
 gi|189037188|sp|A9KWY5|ENGB_SHEB9 RecName: Full=Probable GTP-binding protein EngB
 gi|254783208|sp|B8EDT1|ENGB_SHEB2 RecName: Full=Probable GTP-binding protein EngB
 gi|125995513|gb|ABN59588.1| cell division checkpoint GTPase YihA [Shewanella baltica OS155]
 gi|151367460|gb|ABS10460.1| GTP-binding protein HSR1-related [Shewanella baltica OS185]
 gi|160863109|gb|ABX51643.1| GTP-binding protein HSR1-related [Shewanella baltica OS195]
 gi|217500564|gb|ACK48757.1| GTP-binding protein HSR1-related [Shewanella baltica OS223]
 gi|304349522|gb|EFM13930.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella baltica
           OS183]
 gi|306911360|gb|EFN41786.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella baltica
           BA175]
 gi|315269785|gb|ADT96638.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella baltica
           OS678]
          Length = 219

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLD 263
           +H+ Q   G++   G +I   G SNAGKSS  NAL  +K +A  +  PG T+ +   +LD
Sbjct: 21  AHLDQYLPGDV---GVEIAFAGRSNAGKSSALNALTEQKSLARTSKTPGRTQLINVFELD 77

Query: 264 LEGYLVKI 271
            +  LV +
Sbjct: 78  AQRRLVDL 85


>gi|329116389|ref|ZP_08245106.1| ribosome biogenesis GTPase YqeH [Streptococcus parauberis NCFD
           2020]
 gi|326906794|gb|EGE53708.1| ribosome biogenesis GTPase YqeH [Streptococcus parauberis NCFD
           2020]
          Length = 372

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 22/108 (20%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +R G  + ++G +N GKS+L NA+ +     KD+   +  PGTT D + I LD       
Sbjct: 160 LRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPLD------- 212

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
             D   I +T  I+ +  +   FL  ++      LK I+ KKEI  PK
Sbjct: 213 --DGTFIFDTPGIIHRHQMAH-FLTAKD------LKYISPKKEIK-PK 250


>gi|296104044|ref|YP_003614190.1| Predicted GTPase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295058503|gb|ADF63241.1| Predicted GTPase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 294

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 9/136 (6%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           ++ + +  L ++++  +++ +L +II     I I+G + AGKSSL NAL +  V+ V+  
Sbjct: 9   QLYSPLSLLPSNVAEEVTK-RLHDIIHYQPIIGIMGKTGAGKSSLCNALFRSTVSAVSHT 67

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI--KRTFLEVENADLILLLKEI 308
              TR+     L      V + D  G+ E+ +  E+     +R + E+   DL+L L + 
Sbjct: 68  TACTREPQRFTLQAGERQVTLIDLPGVGESPERDEEYQALYQRIWPEL---DLVLWLIKA 124

Query: 309 NSKKEISFPKNIDFIF 324
           + +   +   + DF F
Sbjct: 125 DDR---ALTPDCDFYF 137


>gi|262039420|ref|ZP_06012727.1| ribosome biogenesis GTP-binding protein YsxC [Leptotrichia
           goodfellowii F0264]
 gi|261746556|gb|EEY34088.1| ribosome biogenesis GTP-binding protein YsxC [Leptotrichia
           goodfellowii F0264]
          Length = 198

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 10/124 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + G +   +G SN GKSSL N+L  ++++A  +  PG T+ +    +D E Y V +    
Sbjct: 21  KKGIEFSFIGRSNVGKSSLINSLTNRRNLARTSKTPGRTQLINYFLIDSEIYFVDLPGYG 80

Query: 276 GIRETDDIVEKEGIK-RTFLEVENADLILL---LKEINSKKEISFPK-----NIDFIFIG 326
             +  + +    G    T+L+ E   ++ L   L+ I S +++   +     NI++  I 
Sbjct: 81  FAKVPEAVKRNWGTTIETYLKSERDKVVFLLLDLRRIPSGEDMEMLRWLEHYNIEYYIIF 140

Query: 327 TKSD 330
           TKSD
Sbjct: 141 TKSD 144


>gi|116872705|ref|YP_849486.1| ribosomal biogenesis GTPase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741583|emb|CAK20707.1| GTPase family protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 287

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKV---GKTLELLDTPGI 175


>gi|87241448|gb|ABD33306.1| Protein C4orf14 homolog, related [Medicago truncatula]
          Length = 616

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTD-----IPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  NAGKS+L NA AKK+ A VT      +PGTT  +L I   L     K+ DT G
Sbjct: 364 VWVIGAQNAGKSTLINAFAKKEGAKVTKLTEAPVPGTTLGILRIAGILSAK-AKMFDTPG 422

Query: 277 I 277
           +
Sbjct: 423 L 423


>gi|58581479|ref|YP_200495.1| GTP-binding protein Era [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623409|ref|YP_450781.1| GTP-binding protein Era [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|81311900|sp|Q5H1R1|ERA_XANOR RecName: Full=GTPase Era
 gi|123522358|sp|Q2P4M0|ERA_XANOM RecName: Full=GTPase Era
 gi|58426073|gb|AAW75110.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367349|dbj|BAE68507.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 299

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+L NAL    V+IV++ P TTR  +L I    EG LV + DT G+
Sbjct: 13  VAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLV-DTPGL 68


>gi|288942809|ref|YP_003445049.1| ferrous iron transport protein B [Allochromatium vinosum DSM 180]
 gi|288898181|gb|ADC64017.1| ferrous iron transport protein B [Allochromatium vinosum DSM 180]
          Length = 781

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R      + G+ N GKS+LFNAL         + PG T +     L+L+G  V++ D  
Sbjct: 15  LRPPLTFALAGNPNCGKSALFNALTGIR-QTTGNWPGVTVERKEGSLELDGRKVRVIDLP 73

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303
           GI   D     E + R +L    ADLI+
Sbjct: 74  GIYSLDASSLDEMVTRDYLLGREADLIV 101


>gi|94429026|gb|ABF18942.1| GTP-binding protein [uncultured bacterium pFosLip]
          Length = 249

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFNAL + DV  V D    T D     L+L +G  + ++DT G    
Sbjct: 14  VALVGYTNAGKSTLFNALTQADV-YVEDKLFATLDPTVRRLELPDGREIVLADTVGF--V 70

Query: 281 DDIVEK--EGIKRTFLEVENADLILLL 305
            D+  +     + T  E   ADLIL L
Sbjct: 71  RDLPHELIAAFRSTLQEAREADLILHL 97


>gi|119179093|ref|XP_001241170.1| hypothetical protein CIMG_08333 [Coccidioides immitis RS]
          Length = 587

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+       
Sbjct: 322 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLIDCPGVVP 381

Query: 277 IRETDDIVEKEGIKRTFLEVEN 298
              TD   E++ + R  + VEN
Sbjct: 382 PSNTD--TEEDILLRGVVRVEN 401


>gi|311110602|ref|ZP_07711999.1| GTP-binding protein Era [Lactobacillus gasseri MV-22]
 gi|311065756|gb|EFQ46096.1| GTP-binding protein Era [Lactobacillus gasseri MV-22]
          Length = 302

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + VAI++  P TTR+ ++ I  D +  +V I DT GI + 
Sbjct: 12  VALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFI-DTPGIHKP 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + ++    K ++  ++  D++L + E
Sbjct: 71  KNKLDDFMDKSSYSALDEVDVVLFMVE 97


>gi|124267179|ref|YP_001021183.1| putative GTP-binding protein [Methylibium petroleiphilum PM1]
 gi|124259954|gb|ABM94948.1| putative GTP-binding protein [Methylibium petroleiphilum PM1]
          Length = 414

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 5/94 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAG- 276
           +++ ++G++NAGKS+LFNAL K   +   D    T D  T  L LE     V +SDT G 
Sbjct: 201 FRVSLIGYTNAGKSTLFNALVKAR-SYAADQLFATLDTTTRQLYLEDAQRSVSLSDTVGF 259

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           IR+    + K     T  E  +ADL+L + + +S
Sbjct: 260 IRDLPHTLVK-AFAATLQEAADADLLLHVVDASS 292


>gi|317504952|ref|ZP_07962901.1| GTP-binding protein Era [Prevotella salivae DSM 15606]
 gi|315663944|gb|EFV03662.1| GTP-binding protein Era [Prevotella salivae DSM 15606]
          Length = 293

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ E   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTEDCQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  +  +   +++AD++L + ++    E    KNIDF+
Sbjct: 69  MQEMMLAFSESALKDADILLYVTDVVENPE----KNIDFL 104


>gi|291613888|ref|YP_003524045.1| GTP-binding proten HflX [Sideroxydans lithotrophicus ES-1]
 gi|291584000|gb|ADE11658.1| GTP-binding proten HflX [Sideroxydans lithotrophicus ES-1]
          Length = 380

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 32/160 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG---YLVKISDTAG-I 277
           + I+G++NAGKS+LFN L   +V +   +  T  D     + LEG     V +SDT G I
Sbjct: 200 VSIVGYTNAGKSTLFNRLTNANVYVANQLFATL-DTTARKIFLEGDSHRQVVLSDTVGFI 258

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------------------EISF 316
           R     +     + T  E   ADL+L + ++NS +                     +I  
Sbjct: 259 RHLPHGL-VAAFRSTLEETAQADLLLHVVDVNSPERHDQVAEVNKVLAEIGAQHIPQIVV 317

Query: 317 PKNIDF--IFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
              ID   +  G K D Y   T  +   +S+ TG GL EL
Sbjct: 318 YNKIDLQGLEAGVKRDEYGKITSIH---LSARTGAGLAEL 354


>gi|222616255|gb|EEE52387.1| hypothetical protein OsJ_34479 [Oryza sativa Japonica Group]
          Length = 568

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 27/182 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G++NAGKS+L N L   DV     +   +  TTR VL  +    G    ++DT G 
Sbjct: 346 VSLVGYTNAGKSTLLNRLTGADVLAEDKLFATLDPTTRRVLMKN----GTEFLLTDTVGF 401

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI-------------SFPKNID 321
            +    +     + T  E+  + +I+ L +I+   ++++I             S PK + 
Sbjct: 402 IQKLPTMLVAAFRATLEEISESSVIVHLVDISHPLAQQQIDAVDKVLKELDIESIPKLVV 461

Query: 322 FIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +  I    D      E        IS+  G+GLEE  N I++ L +    +   +P  K 
Sbjct: 462 WNKIDNTDDTLRVKEEAEKQGIICISAINGDGLEEFCNAIQAKLKDSLVPIEAFVPYDKG 521

Query: 379 HL 380
            L
Sbjct: 522 EL 523


>gi|319783406|ref|YP_004142882.1| GTP-binding proten HflX [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169294|gb|ADV12832.1| GTP-binding proten HflX [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 463

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 33/182 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + I+G++NAGKS+LFN L   DV +  D+   T D     + L  G  + +SDT G    
Sbjct: 233 VAIVGYTNAGKSTLFNRLTGADV-LAQDMLFATLDPTLRRVRLPHGTPIILSDTVGF--I 289

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEI------------------------NSKKEI 314
            D+        + T  EV  ADL+L L++I                        ++K+ I
Sbjct: 290 SDLPTHLIAAFRATLEEVVEADLVLHLRDISDPDTAAQAEDVERILADLGVDAGDAKRVI 349

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPF 371
                ID +  G ++ L +   +        +S+ TGEG++ L   I++ ++ + + L  
Sbjct: 350 EVWNKIDRLDEGNRTRLLADGADANKAPPIAVSAVTGEGIDALKAIIETRMAGELEDLTV 409

Query: 372 SI 373
           +I
Sbjct: 410 TI 411


>gi|257439767|ref|ZP_05615522.1| GTP-binding protein Era [Faecalibacterium prausnitzii A2-165]
 gi|257197787|gb|EEU96071.1| GTP-binding protein Era [Faecalibacterium prausnitzii A2-165]
          Length = 306

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N L  + VAIVT  P TTR  +T  +        + DT G+ +  
Sbjct: 12  VAVIGRPNVGKSSLTNRLVGEKVAIVTSKPQTTRTRITGVVTRGPLQYVLLDTPGVHKAH 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
           + + K   K     + + D+ ++L E
Sbjct: 72  NKLGKRMDKTASDSIADVDVSMMLFE 97


>gi|308804996|ref|XP_003079810.1| GTP-binding family protein (ISS) [Ostreococcus tauri]
 gi|116058267|emb|CAL53456.1| GTP-binding family protein (ISS) [Ostreococcus tauri]
          Length = 358

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 24/164 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + + G++NAGKS+L N L K DV +  D    T D  T  L L  G  V ++DT G  + 
Sbjct: 128 VSLAGYTNAGKSTLLNKLTKSDV-LAEDKLFATLDPTTRRLGLPNGMSVLMTDTVGFIQK 186

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-KEISF-----------PKNIDFIFIGTK 328
                    + T  EV  + LIL + +I+S+  E+               +I  + +  K
Sbjct: 187 LPTQLVAAFRATLEEVLESSLILHVVDISSELAEVQMSAVNNVLGELDASHIPQLLVWNK 246

Query: 329 SDLYS----------TYTEEYDHLISSFTGEGLEELINKIKSIL 362
            DL +                  LIS+ TGEGL+ L  K+ +I+
Sbjct: 247 IDLVTDEEKMLEIEIAAEAAGAVLISTHTGEGLDALQEKVSAII 290


>gi|157373937|ref|YP_001472537.1| GTP-binding protein, HSR1-related [Shewanella sediminis HAW-EB3]
 gi|157316311|gb|ABV35409.1| GTP-binding protein, HSR1-related [Shewanella sediminis HAW-EB3]
          Length = 432

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 42/197 (21%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFN+L   +V     +  T    L   L+L    + ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNSLTASNVYAADQLFATLDPTLR-KLELRDGGIILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKNI 320
             D+V     K T  E   ADL+L                   +LKEI +++       I
Sbjct: 259 PHDLV--AAFKATLQETREADLLLHIVDCADEDMGDNFEQVQKVLKEIGAEE-------I 309

Query: 321 DFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
             + +  K DL    + + D+          +S+   +GLE+L   I +++     +L  
Sbjct: 310 PQLVVCNKIDLLEDVSPKIDYDSEGIPTRVWVSAQQQKGLEQLKEAINALVGKTNLELTL 369

Query: 372 SIPSHKRHLYHLSQTVR 388
            IP+   H  +L Q  R
Sbjct: 370 QIPATAGH--YLGQFYR 384


>gi|322499602|emb|CBZ34676.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 475

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--R 278
           ++  LG  NAGK+SL N++A  +V  V++  G+T+D       +    + + DT GI  R
Sbjct: 186 RVAFLGPQNAGKTSLVNSMALSNVGAVSNRYGSTKDWTKAVATVHDTQLLLLDTPGIVPR 245

Query: 279 ETDDIVEK--EGIKRTFLEVENADLILL 304
           +T  +  K   G  + +  +  +DL++L
Sbjct: 246 DTQRVRRKFASGTAKAYDALFVSDLVVL 273


>gi|146088540|ref|XP_001466079.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134070181|emb|CAM68514.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 489

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--R 278
           ++  LG  NAGK+SL N++A  +V  V++  G+T+D       +    + + DT GI  R
Sbjct: 200 RVAFLGPQNAGKTSLVNSMALSNVGAVSNRYGSTKDWTKAVATVHDTQLLLLDTPGIVPR 259

Query: 279 ETDDIVEK--EGIKRTFLEVENADLILL 304
           +T  +  K   G  + +  +  +DL++L
Sbjct: 260 DTQRVRRKFASGTAKAYDALFVSDLVVL 287


>gi|189346285|ref|YP_001942814.1| ferrous iron transport protein B [Chlorobium limicola DSM 245]
 gi|189340432|gb|ACD89835.1| ferrous iron transport protein B [Chlorobium limicola DSM 245]
          Length = 786

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + ++G+ N GK++LFNAL   +   V + PG T D  T     +G   ++ D  GI  
Sbjct: 21  FVVAVVGNPNCGKTTLFNALTGLNQR-VGNWPGVTVDKKTGSFMRDGVRFELVDLPGIYS 79

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
              + + E I R ++    ADLI+
Sbjct: 80  LSALSQDEEIARDYILSGEADLIV 103


>gi|238853405|ref|ZP_04643784.1| GTP-binding protein Era [Lactobacillus gasseri 202-4]
 gi|238833977|gb|EEQ26235.1| GTP-binding protein Era [Lactobacillus gasseri 202-4]
          Length = 303

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + VAI++  P TTR+ ++ I  D +  +V I DT GI + 
Sbjct: 13  VALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFI-DTPGIHKP 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + ++    K ++  ++  D++L + E
Sbjct: 72  KNKLDDFMDKSSYSALDEVDVVLFMVE 98


>gi|261407159|ref|YP_003243400.1| GTPase EngC [Paenibacillus sp. Y412MC10]
 gi|261283622|gb|ACX65593.1| GTPase EngC [Paenibacillus sp. Y412MC10]
          Length = 357

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 16/106 (15%)

Query: 203 ISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------P 251
           I SH   G  +L   +  G  +V LG S  GKSSL NAL ++DV  V  I          
Sbjct: 177 ICSHTGLGMNELDPYLMPGKTVVFLGMSGVGKSSLLNALIEQDVMKVQAIREVDSRGRHT 236

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            T R +  +     G +V   DT G+RE       EGI+ +F +VE
Sbjct: 237 TTHRQLFMLP---SGTMV--IDTPGMRELGIFDADEGIRASFTDVE 277


>gi|71903521|ref|YP_280324.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS6180]
 gi|94988630|ref|YP_596731.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS9429]
 gi|94992453|ref|YP_600552.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS2096]
 gi|209559441|ref|YP_002285913.1| ribosomal biogenesis GTPase [Streptococcus pyogenes NZ131]
 gi|306827336|ref|ZP_07460623.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           pyogenes ATCC 10782]
 gi|71802616|gb|AAX71969.1| GTP-binding protein [Streptococcus pyogenes MGAS6180]
 gi|94542138|gb|ABF32187.1| GTP-binding protein [Streptococcus pyogenes MGAS9429]
 gi|94545961|gb|ABF36008.1| GTP-binding protein [Streptococcus pyogenes MGAS2096]
 gi|209540642|gb|ACI61218.1| GTP-binding protein [Streptococcus pyogenes NZ131]
 gi|304430483|gb|EFM33505.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           pyogenes ATCC 10782]
          Length = 282

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    +  + E   ++I DT
Sbjct: 117 IQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKE---LEILDT 173

Query: 275 AGI 277
            GI
Sbjct: 174 PGI 176


>gi|289178676|gb|ADC85922.1| GTP-binding protein era [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 363

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L  +   + + DT G
Sbjct: 52  RSGF-VAVVGRPNVGKSTLINALIGMQIAIASSRPETTRKAIRGVLTTDNAQIVLVDTPG 110

Query: 277 I 277
           I
Sbjct: 111 I 111


>gi|229117833|ref|ZP_04247197.1| hypothetical protein bcere0017_41040 [Bacillus cereus Rock1-3]
 gi|228665630|gb|EEL21108.1| hypothetical protein bcere0017_41040 [Bacillus cereus Rock1-3]
          Length = 368

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 12/86 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R+G  + ++G +N GKS+  N + K      ++V   +  PGTT D++ I LD E  
Sbjct: 155 EYYRDGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214

Query: 268 LVKISDTAGI---RETDDIVEKEGIK 290
           L    DT GI    +    V KE +K
Sbjct: 215 LY---DTPGIINHHQMAHYVGKESLK 237


>gi|188997222|ref|YP_001931473.1| GTP-binding protein HflX [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932289|gb|ACD66919.1| GTP-binding protein HflX [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 372

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT--TRDVLTIDLDLEGYLVKISDTA 275
           N  K+ ++G++NAGKSSL   L K+DV I   +  T  T+  L    D++  ++ I+DT 
Sbjct: 192 NILKVSLVGYTNAGKSSLLKRLTKRDVFISDQLFATLDTKTSLIYFPDIKKKVL-ITDTV 250

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           G  E       +    T  E+E+AD+IL + +I+ K
Sbjct: 251 GFVEDMPSEIMDAFMTTLKEIEDADVILHVIDISDK 286


>gi|116053092|ref|YP_793411.1| putative GTP-binding protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894038|ref|YP_002442907.1| putative GTP-binding protein [Pseudomonas aeruginosa LESB58]
 gi|254244166|ref|ZP_04937488.1| hypothetical protein PA2G_05009 [Pseudomonas aeruginosa 2192]
 gi|296391783|ref|ZP_06881258.1| GTP-binding protein HflX [Pseudomonas aeruginosa PAb1]
 gi|313109944|ref|ZP_07795872.1| putative GTP-binding protein [Pseudomonas aeruginosa 39016]
 gi|115588313|gb|ABJ14328.1| putative GTP-binding protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126197544|gb|EAZ61607.1| hypothetical protein PA2G_05009 [Pseudomonas aeruginosa 2192]
 gi|218774266|emb|CAW30083.1| probable GTP-binding protein [Pseudomonas aeruginosa LESB58]
 gi|310882374|gb|EFQ40968.1| putative GTP-binding protein [Pseudomonas aeruginosa 39016]
          Length = 433

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFNAL   +V     +  T    L  + 
Sbjct: 182 VRSQREQARRGRKRADIPAVSLVGYTNAGKSTLFNALTASEVYAANQLFATLDPTLRRLQ 241

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           LD  G +V ++DT G IR     +  E  + T  E  NADL+L
Sbjct: 242 LDDLGPVV-LADTVGFIRHLPHKL-VEAFRATLEESSNADLLL 282


>gi|163942091|ref|YP_001646975.1| GTP-binding protein YqeH [Bacillus weihenstephanensis KBAB4]
 gi|229013556|ref|ZP_04170689.1| hypothetical protein bmyco0001_39650 [Bacillus mycoides DSM 2048]
 gi|229062034|ref|ZP_04199359.1| hypothetical protein bcere0026_41060 [Bacillus cereus AH603]
 gi|229135161|ref|ZP_04263961.1| hypothetical protein bcere0014_40630 [Bacillus cereus BDRD-ST196]
 gi|229169083|ref|ZP_04296798.1| hypothetical protein bcere0007_40350 [Bacillus cereus AH621]
 gi|163864288|gb|ABY45347.1| Nitric-oxide synthase [Bacillus weihenstephanensis KBAB4]
 gi|228614311|gb|EEK71421.1| hypothetical protein bcere0007_40350 [Bacillus cereus AH621]
 gi|228648289|gb|EEL04324.1| hypothetical protein bcere0014_40630 [Bacillus cereus BDRD-ST196]
 gi|228717186|gb|EEL68861.1| hypothetical protein bcere0026_41060 [Bacillus cereus AH603]
 gi|228747716|gb|EEL97586.1| hypothetical protein bmyco0001_39650 [Bacillus mycoides DSM 2048]
          Length = 368

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 38/227 (16%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R G  + ++G +N GKS+  N + K      ++V   +  PGTT D++ I LD    
Sbjct: 155 EHYREGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDETSS 214

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFIFI 325
           L    DT GI     +    G +   L     ++  ++ ++N ++ + F      D++  
Sbjct: 215 LY---DTPGIINHHQMAHYVGKQSLKLITPTTEVKPMVFQLNEEQTLFFGGLARFDYVSG 271

Query: 326 GTKS---------DLYSTYTEEYDHLISSFTGEGL-----EELINKIKSILSNKFKKLPF 371
           G ++          ++ T  E+ D L     GE L     EEL N        KF K  F
Sbjct: 272 GRRAFTCHFSNRLTIHRTKLEKADELYEKHAGELLNPPTPEELEN------MPKFVKYEF 325

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           +I   K         V +  +  +   + G  I+A   +  SVSL K
Sbjct: 326 NIREPK-------TDVVFSGLGWVTVNESGAKIVAHVPKGVSVSLRK 365


>gi|322411765|gb|EFY02673.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 282

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    +  + E   ++I DT
Sbjct: 117 IQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKE---LEILDT 173

Query: 275 AGI 277
            GI
Sbjct: 174 PGI 176


>gi|303239953|ref|ZP_07326475.1| GTP-binding protein Era [Acetivibrio cellulolyticus CD2]
 gi|302592432|gb|EFL62158.1| GTP-binding protein Era [Acetivibrio cellulolyticus CD2]
          Length = 297

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ I I+G  N GKS+L N +  + +AI++D P TTR+ +   +  + + +   DT G
Sbjct: 4   KSGF-ISIVGRPNVGKSTLLNNITGEKIAIMSDKPQTTRNTIKAVITGDEHQIVFIDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           I +  + +    +      +   D++L L E  + K
Sbjct: 63  IHKPKNKLGDFMVNIAVETLNEVDVVLFLVEAQNLK 98


>gi|229076010|ref|ZP_04208983.1| hypothetical protein bcere0024_40490 [Bacillus cereus Rock4-18]
 gi|229098807|ref|ZP_04229745.1| hypothetical protein bcere0020_40330 [Bacillus cereus Rock3-29]
 gi|228684651|gb|EEL38591.1| hypothetical protein bcere0020_40330 [Bacillus cereus Rock3-29]
 gi|228707122|gb|EEL59322.1| hypothetical protein bcere0024_40490 [Bacillus cereus Rock4-18]
          Length = 368

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 12/86 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R+G  + ++G +N GKS+  N + K      ++V   +  PGTT D++ I LD E  
Sbjct: 155 EYYRDGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214

Query: 268 LVKISDTAGI---RETDDIVEKEGIK 290
           L    DT GI    +    V KE +K
Sbjct: 215 LY---DTPGIINHHQMAHYVGKESLK 237


>gi|170021421|ref|YP_001726375.1| GTP-binding protein HSR1-related [Escherichia coli ATCC 8739]
 gi|169756349|gb|ACA79048.1| GTP-binding protein HSR1-related [Escherichia coli ATCC 8739]
          Length = 291

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           I I+G S AGKSSL N L + +V+ V+D+   TR+VL   L    + + I D  G+ E
Sbjct: 39  IGIMGKSGAGKSSLCNELFRGEVSPVSDVNACTREVLRFRLRSGRHSLVIVDLPGVGE 96


>gi|117619280|ref|YP_855344.1| GTP-binding protein Era [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117560687|gb|ABK37635.1| GTP-binding protein Era [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 299

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +L ID + E Y     DT G+   
Sbjct: 10  VAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRILGIDTE-ENYQTIYVDTPGLH-- 66

Query: 281 DDIVEKEGIKR 291
             I EK  I R
Sbjct: 67  --IEEKRAINR 75


>gi|56963446|ref|YP_175177.1| Era, Era/TrmE family GTP-binding protein [Bacillus clausii KSM-K16]
 gi|81822138|sp|Q5WHD9|ERA_BACSK RecName: Full=GTPase Era
 gi|56909689|dbj|BAD64216.1| Era/TrmE family GTP-binding protein Era [Bacillus clausii KSM-K16]
          Length = 303

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 8/94 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D P TTR+ +   L  +   +   DT GI +  
Sbjct: 13  VSIIGRPNVGKSTLLNRVIGQKIAIMSDKPQTTRNKVQGVLTRDDAQLVFMDTPGIHKPK 72

Query: 282 ----DIVEKEGIKRTFLEVENADLILLLKEINSK 311
               D + K   K T  EV   DLIL + E ++K
Sbjct: 73  HRLGDFMMKVA-KNTLREV---DLILYVVEADAK 102


>gi|119025741|ref|YP_909586.1| GTP-binding protein Era [Bifidobacterium adolescentis ATCC 15703]
 gi|154487437|ref|ZP_02028844.1| hypothetical protein BIFADO_01289 [Bifidobacterium adolescentis
           L2-32]
 gi|118765325|dbj|BAF39504.1| widely conserved GTP-binding protein [Bifidobacterium adolescentis
           ATCC 15703]
 gi|154083955|gb|EDN83000.1| hypothetical protein BIFADO_01289 [Bifidobacterium adolescentis
           L2-32]
          Length = 332

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L  +   + + DT G
Sbjct: 23  RSGF-VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPG 81

Query: 277 I 277
           I
Sbjct: 82  I 82


>gi|229104967|ref|ZP_04235623.1| hypothetical protein bcere0019_41050 [Bacillus cereus Rock3-28]
 gi|228678461|gb|EEL32682.1| hypothetical protein bcere0019_41050 [Bacillus cereus Rock3-28]
          Length = 368

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 9/70 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R+G  + ++G +N GKS+  N + K      ++V   +  PGTT D++ I LD E  
Sbjct: 155 EYYRDGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214

Query: 268 LVKISDTAGI 277
           L    DT GI
Sbjct: 215 LY---DTPGI 221


>gi|239618466|ref|YP_002941788.1| GTP-binding protein Era [Kosmotoga olearia TBF 19.5.1]
 gi|239507297|gb|ACR80784.1| GTP-binding protein Era [Kosmotoga olearia TBF 19.5.1]
          Length = 305

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 47/172 (27%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDL--------------- 262
           + ++G  N GKSSL N L  + VAIV+D   TTR+    ++T +                
Sbjct: 12  VSLVGKPNVGKSSLVNQLVGEKVAIVSDKVQTTRNRIGGIVTTERGQVIFYDTPGIHKPL 71

Query: 263 -DLEGYLVKISDTA---------------GIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             L GYLVKI+ +A               GI+++D +V K       +   N  + L++ 
Sbjct: 72  HKLGGYLVKITVSALNGSDLIAAILDISDGIKKSDFLVAKH------VNSSNIPVFLVIN 125

Query: 307 EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           +I+  K  +  K  +F+  GTK  L+    + +   +S+ TGEG++E +  +
Sbjct: 126 KIDVVK--TRKKITEFLEEGTK--LFKNVEKTFP--VSAITGEGIKEFLEAV 171


>gi|163795446|ref|ZP_02189413.1| acetylglutamate kinase [alpha proteobacterium BAL199]
 gi|159179432|gb|EDP63963.1| acetylglutamate kinase [alpha proteobacterium BAL199]
          Length = 214

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 9/63 (14%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDL-------DLEGY-LVKI 271
           ++   G SN GKSSL NAL  +K +A  ++ PG T++++  DL       DL GY   K+
Sbjct: 43  EVAFAGRSNVGKSSLVNALTGRKSLARTSNTPGRTQELIFFDLGSRLQLVDLPGYGYAKV 102

Query: 272 SDT 274
           S T
Sbjct: 103 SKT 105


>gi|78046933|ref|YP_363108.1| GTP-binding protein Era [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|123585559|sp|Q3BVV5|ERA_XANC5 RecName: Full=GTPase Era
 gi|78035363|emb|CAJ23008.1| GTP-binding protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 300

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+L NAL    V+IV++ P TTR  +L I    EG LV + DT G+
Sbjct: 13  VAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLV-DTPGL 68


>gi|303241005|ref|ZP_07327515.1| GTP-binding proten HflX [Acetivibrio cellulolyticus CD2]
 gi|302591430|gb|EFL61168.1| GTP-binding proten HflX [Acetivibrio cellulolyticus CD2]
          Length = 619

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 27/179 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG-IRE 279
           + ++G++NAGKS+L N L K DV +  D    T D    +L L  G    + DT G IR+
Sbjct: 403 VALVGYTNAGKSTLMNTLCKSDV-LAEDKLFATLDPTARNLKLPNGREALLIDTVGFIRK 461

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDFIFIGTKSDLYSTY 335
              +++  E  K T  E   AD+++ + ++ S   +++I    NI    +G  S      
Sbjct: 462 LPHELI--ESFKSTLEEAVYADVLIHVVDVTSYEAQEQIEVVDNI-LNALGASSKPIVMA 518

Query: 336 TEEYDHL-----------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
             + D L                 IS+ T EG E+L+  I  +L    ++L   IP H+
Sbjct: 519 LNKVDMLEERKRAPILNPMGKVIEISAVTKEGFEDLLKAITDVLGQDEEELELLIPYHE 577


>gi|172040561|ref|YP_001800275.1| putative GTP-binding protein [Corynebacterium urealyticum DSM 7109]
 gi|171851865|emb|CAQ04841.1| putative GTP-binding protein [Corynebacterium urealyticum DSM 7109]
          Length = 506

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 29/180 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           ++ I G++NAGKSSL NAL    V +V D    T D  T   +L +G  V  SDT G   
Sbjct: 269 QVAIAGYTNAGKSSLINALTGAGV-LVEDALFATLDPTTRRAELADGRSVIFSDTVGFVR 327

Query: 280 TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKNI 320
                  E  + T  EV  AD++L                   ++ EI ++     P  I
Sbjct: 328 HLPTQLVEAFRSTLEEVMAADVVLHVVDGSDPFPLEQIRSVNTVISEIVAESGQDAPPEI 387

Query: 321 DFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +    K+D       E  H       +S+ TGEG++EL  +++  L++  +   F++P
Sbjct: 388 MVVNKIDKAD--PLVLAELRHKLNDVVFVSAHTGEGIDELETRLELFLNSLDETGVFAVP 445


>gi|126653886|ref|ZP_01725733.1| YqeH [Bacillus sp. B14905]
 gi|126589611|gb|EAZ83750.1| YqeH [Bacillus sp. B14905]
          Length = 367

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 25/171 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+  N + K+     +V   +  PGTT D++ I LD    L   
Sbjct: 158 RQGQNVYVVGCTNVGKSTFINRIIKQATGEGEVITTSHFPGTTLDMIEIPLDDGSALY-- 215

Query: 272 SDTAGI------------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            DT GI             E   I+ K+ IK    + +NA   L +  +     I   ++
Sbjct: 216 -DTPGIINHHQMAHHIDSSELKYIMPKKEIKPKVYQ-QNAGQTLFIGALARFDFIQGDRS 273

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL----EELINKIKSILSNKF 366
              I +     ++ T  E+ D L +   GE L     E I+++  ++ ++F
Sbjct: 274 AFTIHVANDLPIHRTKLEKADMLYAEHKGELLAPPTAEFIDQLPPLVRHEF 324


>gi|123966675|ref|YP_001011756.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9515]
 gi|123201041|gb|ABM72649.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9515]
          Length = 303

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 25/170 (14%)

Query: 218 NGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           N YK   + +LG  N GKS+L N L  + + I + +  TTR+ L   L  E   +   DT
Sbjct: 2   NNYKSGFVTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNRLKGILTTEFGQIIFVDT 61

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
            G+ +   ++ +  +K     ++  D+++L+ + + +        K+       +FI + 
Sbjct: 62  PGVHKPHHLLGEILVKNAKSAIKGVDMVILVLDSSVEPGRGDEYIKDFLVSNKTEFIIVL 121

Query: 327 TKSDLY-----STYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
            K DL      S   ++Y  +         +S+  G G  ELIN I + L
Sbjct: 122 NKWDLVNKEFKSLRLDQYRKVFGTSKSFQTVSASEGYGCSELINIILNFL 171


>gi|121602372|ref|YP_988930.1| GTP-binding proten HflX [Bartonella bacilliformis KC583]
 gi|120614549|gb|ABM45150.1| GTP-binding proten HflX [Bartonella bacilliformis KC583]
          Length = 457

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 42/184 (22%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLE------GYLVKISD 273
           I ++G++NAGKS+LFN L+  ++         T+D+L  T+D  L       G  V +SD
Sbjct: 222 IALVGYTNAGKSTLFNRLSGANIL--------TKDMLFATLDPTLRKITLPYGKTVLLSD 273

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNID--- 321
           T G             + T  EV  ADLI+ +++I+            EI     ID   
Sbjct: 274 TVGFISNLPTHLIAAFRATLEEVIEADLIIHVRDISDPDHQFHAQDVLEILSSLGIDIND 333

Query: 322 ---FIFIGTKSDLYSTYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFK 367
               I +  K D+   +                 ++S+ TGEGL++L+  I+ ++S + +
Sbjct: 334 KGRIIEVWNKIDILDQHVLNALQMNTKTLLNPALMVSALTGEGLKQLLITIEKLISGEMQ 393

Query: 368 KLPF 371
            + F
Sbjct: 394 NIEF 397


>gi|21910353|ref|NP_664621.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS315]
 gi|28895930|ref|NP_802280.1| ribosomal biogenesis GTPase [Streptococcus pyogenes SSI-1]
 gi|21904550|gb|AAM79424.1| putative GTP-binding protein [Streptococcus pyogenes MGAS315]
 gi|28811180|dbj|BAC64113.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 282

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    +  + E   ++I DT
Sbjct: 117 IQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKE---LEILDT 173

Query: 275 AGI 277
            GI
Sbjct: 174 PGI 176


>gi|121604780|ref|YP_982109.1| GTP-binding protein, HSR1-like [Polaromonas naphthalenivorans CJ2]
 gi|120593749|gb|ABM37188.1| GTP-binding protein HflX [Polaromonas naphthalenivorans CJ2]
          Length = 383

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDT 274
           RN   I ++G++NAGKS+LFNAL K   A   D    T D  T  L L   G    +SDT
Sbjct: 192 RNALSISLVGYTNAGKSTLFNALVKAS-AYTADQLFATLDTTTRQLYLGEAGRSASLSDT 250

Query: 275 AG-IRETDDIVEKEGIKRTFLEVENADLIL 303
            G IR+    +  +    T  E  +ADL+L
Sbjct: 251 VGFIRDLPHGL-IDAFAATLKEAVDADLLL 279


>gi|83951644|ref|ZP_00960376.1| GTP-binding protein Era [Roseovarius nubinhibens ISM]
 gi|83836650|gb|EAP75947.1| GTP-binding protein Era [Roseovarius nubinhibens ISM]
          Length = 301

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +  + L+ E  LV + DT 
Sbjct: 4   RAGF-IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVALEGEAQLVFV-DTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           G+ +    +++  +   +    +AD+++LL E +
Sbjct: 62  GLFKPRRRLDRAMVAAAWGGASDADVVVLLIEAH 95


>gi|327441072|dbj|BAK17437.1| predicted GTPase [Solibacillus silvestris StLB046]
          Length = 317

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   ++PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINRLAKKNLAKTGNMPGVTKAQQWIKV---GKEIELLDTPGI 175


>gi|254736440|ref|ZP_05194146.1| GTP-binding protein YqeH [Bacillus anthracis str. Western North
           America USA6153]
          Length = 364

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 20/155 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R G  + ++G +N GKS+  N + K      ++V   +  PGTT D++ I LD E  
Sbjct: 155 EYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFIFI 325
           L    DT GI     +    G +   L     ++  ++ ++N ++ + F      D++  
Sbjct: 215 LY---DTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG 271

Query: 326 GTKS---------DLYSTYTEEYDHLISSFTGEGL 351
           G ++          ++ T  E+ D L  +  G+ L
Sbjct: 272 GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLL 306


>gi|329924530|ref|ZP_08279592.1| ribosome biogenesis GTP-binding protein YsxC [Paenibacillus sp.
           HGF5]
 gi|328940609|gb|EGG36929.1| ribosome biogenesis GTP-binding protein YsxC [Paenibacillus sp.
           HGF5]
          Length = 214

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 11/121 (9%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGI 277
           +I + G SN GKSSL N + ++K++A  +  PG T+ +    ++ + YLV       A +
Sbjct: 25  EIALAGRSNVGKSSLINRMISRKNLARTSATPGKTQQLNYYRVNDDLYLVDFPGYGYAKV 84

Query: 278 RETDDIVEKEGIKRTFLEVENADLILL---LKEINSKKEISFPK-----NIDFIFIGTKS 329
            +T      E I+R  L  E   L+LL   ++   SK +IS  +     N     + TK+
Sbjct: 85  SKTQRAAFGEMIERYLLSREELKLVLLIVDMRHPPSKDDISMYEWLQHYNRPVCVVATKA 144

Query: 330 D 330
           D
Sbjct: 145 D 145


>gi|323127303|gb|ADX24600.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 282

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    +  + E   ++I DT
Sbjct: 117 IQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKE---LEILDT 173

Query: 275 AGI 277
            GI
Sbjct: 174 PGI 176


>gi|300870023|ref|YP_003784894.1| GTP-binding HSR1-like protein [Brachyspira pilosicoli 95/1000]
 gi|300687722|gb|ADK30393.1| GTP-binding protein, HSR1-related protein [Brachyspira pilosicoli
           95/1000]
          Length = 366

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT----TRDV-LTIDLDLEGYLVKISDT 274
           ++I I+G++NAGKS+LFN L K+D  +   +  T    TR + L+ D  +E     ISDT
Sbjct: 196 FRIAIVGYTNAGKSTLFNLLCKEDTYVEDKLFATLDTHTRKLYLSDDAPVEAI---ISDT 252

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            G  +          K T  EV  ADL+L L
Sbjct: 253 VGFIDRLPHTLIASFKSTLSEVVEADLLLHL 283


>gi|300869566|ref|ZP_07114147.1| conserved exported hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300332434|emb|CBN59345.1| conserved exported hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 524

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 90/221 (40%), Gaps = 36/221 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDT 274
           R   ++V+ G  +AGK+SL NAL  +    V    GTT    T  L L+G    + I+DT
Sbjct: 109 RGNVEVVVFGTGSAGKTSLINALVGRMAGQVGAPMGTTEVGETYILKLKGLDREILIADT 168

Query: 275 AGIRETDDI-VEKEGIKRTFLEVENADLILL----------------LKEINSKKEISFP 317
            GI E      ++E + R       ADL+L                 L EI  +  + F 
Sbjct: 169 PGILEAGIAGTQREELARQL--ATEADLLLFVLDNDLRKSEYEPLRTLAEIGKRSLVVFN 226

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           K  D      K  + +   +    ++SS     +     +I     ++FK  P  +P  +
Sbjct: 227 KT-DLYPDSDKETIIARLRQRVKGIVSSMDVVAIAANPQEITLESGDRFKPEPDIMPLIR 285

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           R             MA+L   + G D+IA+N+ L S  LG+
Sbjct: 286 R-------------MAALLRAE-GKDLIADNILLQSQRLGE 312


>gi|284990195|ref|YP_003408749.1| GTP-binding protein Era [Geodermatophilus obscurus DSM 43160]
 gi|284063440|gb|ADB74378.1| GTP-binding protein Era [Geodermatophilus obscurus DSM 43160]
          Length = 305

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+  ++ G  NAGK++L NAL  + V IV++ P TTR  +   +   G  + + DT G
Sbjct: 10  RSGFACLV-GRPNAGKTTLTNALVGEKVGIVSNRPQTTRHAIRGVVHRPGGQLVLVDTPG 68

Query: 277 I 277
           +
Sbjct: 69  L 69


>gi|223040645|ref|ZP_03610915.1| GTP-binding protein Era [Campylobacter rectus RM3267]
 gi|222878103|gb|EEF13214.1| GTP-binding protein Era [Campylobacter rectus RM3267]
          Length = 293

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDT 274
           +++G+ + I+G +NAGKSSL N L    + IV+     TR  ++ I ++ E  +V  +DT
Sbjct: 1   MKSGF-VSIIGRTNAGKSSLLNCLLGAKITIVSHKQNATRRKISGIVMNGEDQIV-FTDT 58

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
            G+ E++  + K  I      + + D I+ L  I+
Sbjct: 59  PGLHESNKTLNKLMISEAIKSMGDCDAIVFLAPIH 93


>gi|198448635|ref|YP_002221411.1| putative small GTP-binding domain protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|198404304|gb|ACH87662.1| putative small GTP-binding domain protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 320

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K+  +I     I I+G + AGKSSL N++ K +V  V+D+   TR V  + +      +K
Sbjct: 55  KIRNVINYEPVIGIMGKTGAGKSSLCNSIFKGNVCAVSDVEACTRKVQELIISFGDRTIK 114

Query: 271 ISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLL 305
           I D  G+   E  DI  +E  K    E+   DL+L +
Sbjct: 115 IIDIPGVGENEAKDIEYEELYKNLLPEL---DLVLWV 148


>gi|163754016|ref|ZP_02161139.1| putative GTP-binding protein [Kordia algicida OT-1]
 gi|161326230|gb|EDP97556.1| putative GTP-binding protein [Kordia algicida OT-1]
          Length = 294

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 48/88 (54%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +    
Sbjct: 10  IIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGEDFQMILSDTPGIIKPAYE 69

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311
           ++   +       E+AD+++ + EI  K
Sbjct: 70  LQSSMMDFVKSAFEDADVLIYMVEIGEK 97


>gi|119026136|ref|YP_909981.1| GTP-binding protein [Bifidobacterium adolescentis ATCC 15703]
 gi|118765720|dbj|BAF39899.1| GTP-binding protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 498

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 22/206 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G++NAGKSSL N L      +   +  T    +      +G L    DT G     
Sbjct: 280 VAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRAKAKDGRLYAYVDTVGFVRRL 339

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKE----ISFPKNIDFIFIGTK 328
                E  K T  EV +ADLI+ +          +I++  +    I   + I  I    K
Sbjct: 340 PTQLIEAFKSTLEEVADADLIVHVVDGSHPDPFSQIDAVNDVLSDIDGVETIPTIVAFNK 399

Query: 329 SDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           +D       E         +++S+F+GEG+E L  K++S+L      +   +P     L 
Sbjct: 400 ADRMDEAARERVEALMPDAYIVSAFSGEGVEALREKVESMLPTPNVHVEALLPYAAGSL- 458

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAE 407
            +S+   Y  + ++  +D G+ + AE
Sbjct: 459 -MSRVREYGRVVNVEYRDDGMMLEAE 483


>gi|160872143|ref|ZP_02062275.1| GTP-binding proten HflX [Rickettsiella grylli]
 gi|159120942|gb|EDP46280.1| GTP-binding proten HflX [Rickettsiella grylli]
          Length = 366

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           I ++G++N GKS+LFN L + +V ++ + P  T D     + L G +  ++DT G IR  
Sbjct: 200 ISLVGYTNTGKSTLFNRLTQSNV-LIANQPFATLDPSIRRMSLNGKIAILADTVGFIRHL 258

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
              +     + T  E ++ADL+L
Sbjct: 259 PHHL-IAAFRATLEETQHADLLL 280


>gi|296283698|ref|ZP_06861696.1| GTP-binding protein Era [Citromicrobium bathyomarinum JL354]
          Length = 292

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDL---DLEGYLVKISDTAGIRE 279
           +LG  NAGKS+L NAL  + VAIV+    TTR  +L I L   D     + + DT GI  
Sbjct: 1   MLGAPNAGKSTLVNALVGQKVAIVSAKAQTTRARMLGIALHENDDANTQMILVDTPGIFA 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
               +++  +   +   E+AD +LLL
Sbjct: 61  PRRRLDRAMVSAAWEGAESADAVLLL 86


>gi|283768752|ref|ZP_06341663.1| GTP-binding protein HflX [Bulleidia extructa W1219]
 gi|283104538|gb|EFC05911.1| GTP-binding protein HflX [Bulleidia extructa W1219]
          Length = 412

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 25/197 (12%)

Query: 221 KIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++ ++G++NAGKSSL NA+           +V D    T D     ++ +G+   + DT 
Sbjct: 194 RVGLVGYTNAGKSSLLNAILAYTRQNGQPVMVRDRVFETLDTAVRLVEYKGFAFYLYDTV 253

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLI-LLLKEINSKKEISFPKN--------------I 320
           G       + K  I   F  +E+A    +L+  ++    +SF K                
Sbjct: 254 GFVSN---LPKTLIDAFFSTLESAKQADVLIHVVDGSDPLSFEKQEATKSVLVKIGAHPK 310

Query: 321 DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
             + + TK DL S++  E    +SS+T EG+ EL++++  +L  K  +    +P  K  L
Sbjct: 311 QSLLVHTKKDLVSSF--EDGLWVSSYTQEGIGELLDQLIGLLFPKEVQFTCLLPYDKMAL 368

Query: 381 YHLSQTVRYLEMASLNE 397
           +    ++ +L++    E
Sbjct: 369 FDRLSSLAHLQIVGQEE 385


>gi|11498040|ref|NP_069264.1| GTP1/OBGfamily GTP-binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2650203|gb|AAB90809.1| GTP-binding protein, GTP1/OBG-family [Archaeoglobus fulgidus DSM
           4304]
          Length = 328

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 18/184 (9%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA--KKDVAIVT 248
           E ++D L   ND  + + +     I+++   IV+ G+ N GKSSL   ++  K +VA   
Sbjct: 128 EQIDDELRFLNDAKNRMREI---PILQDLPTIVVAGYPNVGKSSLVARISTVKPEVA--- 181

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN-ADLILLLKE 307
             P TT+ +     +  G  V+I DT G+ +          +R  L +++ AD+IL + +
Sbjct: 182 SYPFTTKKINLGFAEFAGKRVQIIDTPGLLDRPLSKRNRIERRAVLALKHLADIILFVID 241

Query: 308 INS------KKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHLISSFTGEGLEELINKI 358
                    +K++S  + I   F     ++YS    +        S+ TGEG++ELI +I
Sbjct: 242 PTETCGYSLEKQLSLLEEIKGYFAKPTVEVYSKADMHDRRDRQAYSAVTGEGIDELIKEI 301

Query: 359 KSIL 362
           + ++
Sbjct: 302 EKMV 305


>gi|328704563|ref|XP_003242532.1| PREDICTED: GTPase Era, mitochondrial-like [Acyrthosiphon pisum]
          Length = 227

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 54/96 (56%), Gaps = 6/96 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  NAGKSS+ N++ ++++   +    TTR  +     ++   +   DT G+ ++
Sbjct: 60  KIAIIGVPNAGKSSIINSIVQRNICPYSCKVHTTRSSVRAVRSVDDTQLVFLDTPGLVDS 119

Query: 281 DDIVEKEGIKRTFLE-----VENADLILLLKEINSK 311
            +I  K  ++RTF       +E AD+I ++ +++++
Sbjct: 120 TEIA-KYNLERTFANDSVNSIEEADIIGVIHDVSNR 154


>gi|299471247|emb|CBN79102.1| PEra, plastid Era GTPase [Ectocarpus siliculosus]
          Length = 382

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 3/99 (3%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  E  R GY + I+G  N GKS+L N +    ++IVT   GTTR  +T  +  + + + 
Sbjct: 65  RAAEDFRTGY-VTIVGSPNVGKSTLMNNMIGDRLSIVTPKAGTTRHRITGIMTGDDFQMI 123

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLE-VENADLILLLKEI 308
             DT G+  T   +  EG+     E + +AD IL + ++
Sbjct: 124 YQDTPGVL-TPAYMLHEGMMNFVQEAMGDADAILFVTDL 161


>gi|293602838|ref|ZP_06685277.1| HSR1 family GTP-binding protein [Achromobacter piechaudii ATCC
           43553]
 gi|292818632|gb|EFF77674.1| HSR1 family GTP-binding protein [Achromobacter piechaudii ATCC
           43553]
          Length = 466

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGIR 278
           +I ++GH+N GK+SL   L +      V D PGTTR V    L L+G  V +  DT G+ 
Sbjct: 7   RIALVGHTNTGKTSLLRTLTRDTGFGEVADSPGTTRHVEGARLRLDGRPVLEWFDTPGME 66

Query: 279 ETDDIVE 285
           ++  ++E
Sbjct: 67  DSIALLE 73


>gi|256545610|ref|ZP_05472968.1| GTP-binding protein Era [Anaerococcus vaginalis ATCC 51170]
 gi|256398687|gb|EEU12306.1| GTP-binding protein Era [Anaerococcus vaginalis ATCC 51170]
          Length = 293

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 96/203 (47%), Gaps = 24/203 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + ++G +N GKS+L   +  + ++I+++ P TTRD + I  + E   +   DT 
Sbjct: 1   MKSGF-VSVVGRANVGKSTLMEKILGEKISIISNKPQTTRDEIKIIYNDENSQIIFLDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL------------------LLKEINSKKEISFP 317
           GI+   + +++  ++ +   ++++D++                   +L+++N+ K I   
Sbjct: 60  GIQTPRNKLQEHLLEVSEDSLKDSDIVTFIVDNSLTIGRLDKMILEILEKVNAPK-ILLI 118

Query: 318 KNIDFIFIGTKSDLYSTY----TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              D +  G    +  TY    T +Y   IS+   E + + I  +K IL       P  +
Sbjct: 119 NKCDLLEEGEIEQIKRTYIGLNTFDYIIPISALNDENIGKYIETVKEILPEGPLYYPSDM 178

Query: 374 PSHKRHLYHLSQTVRYLEMASLN 396
            + K   + +S+ +R   + +L+
Sbjct: 179 ITDKNERFIVSEIIREKALKNLS 201


>gi|242399634|ref|YP_002995059.1| GTP-binding protein [Thermococcus sibiricus MM 739]
 gi|242266028|gb|ACS90710.1| GTP-binding protein [Thermococcus sibiricus MM 739]
          Length = 188

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           K+ I+G  N GKS+L NAL  K V+    IPGTT+ ++
Sbjct: 3   KVAIIGAENVGKSTLMNALLGKKVSETQPIPGTTKGII 40


>gi|212716036|ref|ZP_03324164.1| hypothetical protein BIFCAT_00948 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661403|gb|EEB21978.1| hypothetical protein BIFCAT_00948 [Bifidobacterium catenulatum DSM
           16992]
          Length = 332

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L  +   + + DT G
Sbjct: 23  RSGF-VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPG 81

Query: 277 I 277
           I
Sbjct: 82  I 82


>gi|148656458|ref|YP_001276663.1| small GTP-binding protein [Roseiflexus sp. RS-1]
 gi|148568568|gb|ABQ90713.1| small GTP-binding protein [Roseiflexus sp. RS-1]
          Length = 454

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 33/191 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I I+G++NAGKS+L NAL+  +V     +   +  TTR V        G    ++DT G 
Sbjct: 227 IAIVGYTNAGKSTLLNALSGANVRAEDRLFATLDPTTRQVTLPG----GQQALLTDTVGF 282

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIFI 325
            +          + T  E+  AD++L + +I         + +              I +
Sbjct: 283 IQKLPTQLVAAFRATLEEIREADVLLHVLDITHPNAAQQTQTVLDTLRDLHVEDRPIITV 342

Query: 326 GTKSDLYSTYTE-EYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL +   E E + +            +S+  G GL+ L+++I+  LS +   L   
Sbjct: 343 LNKVDLMAGMNEVETERVAEALGMPDDYVAVSARKGWGLDTLLSRIEQTLSERMMPLTAF 402

Query: 373 IPSHKRHLYHL 383
           IP  +  L  L
Sbjct: 403 IPYRRNDLVSL 413


>gi|257061326|ref|YP_003139214.1| GTP-binding protein Era [Cyanothece sp. PCC 8802]
 gi|256591492|gb|ACV02379.1| GTP-binding protein Era [Cyanothece sp. PCC 8802]
          Length = 314

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKS+L N L  + +AI + +  TTR+ L   L  E   +   DT GI +    
Sbjct: 27  IIGRPNVGKSTLMNQLVGQKIAITSPVSQTTRNRLRGILTTEEAQIIFVDTPGIHKPHHQ 86

Query: 284 VEKEGIKRTFLEVENADLILLL 305
           + K  ++     +   D+IL++
Sbjct: 87  LGKILVQNAEAAINAVDIILVV 108


>gi|218247339|ref|YP_002372710.1| GTP-binding protein Era [Cyanothece sp. PCC 8801]
 gi|226741204|sp|B7K414|ERA_CYAP8 RecName: Full=GTPase Era
 gi|218167817|gb|ACK66554.1| GTP-binding protein Era [Cyanothece sp. PCC 8801]
          Length = 314

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKS+L N L  + +AI + +  TTR+ L   L  E   +   DT GI +    
Sbjct: 27  IIGRPNVGKSTLMNQLVGQKIAITSPVSQTTRNRLRGILTTEEAQIIFVDTPGIHKPHHQ 86

Query: 284 VEKEGIKRTFLEVENADLILLL 305
           + K  ++     +   D+IL++
Sbjct: 87  LGKILVQNAEAAINAVDIILVV 108


>gi|160915285|ref|ZP_02077498.1| hypothetical protein EUBDOL_01294 [Eubacterium dolichum DSM 3991]
 gi|158433084|gb|EDP11373.1| hypothetical protein EUBDOL_01294 [Eubacterium dolichum DSM 3991]
          Length = 358

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           R G  +V++G +NAGKS+L NA+        +  PGTT DV  I
Sbjct: 159 RKGRDVVVMGMANAGKSTLLNAMCDSRQLTTSRHPGTTLDVNAI 202


>gi|145486124|ref|XP_001429069.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124396159|emb|CAK61671.1| unnamed protein product [Paramecium tetraurelia]
          Length = 242

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 198 FLKNDISSHISQG----KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           F KN+I   + Q     +L +I R  + I+    SN GKSSL NAL  ++VA  ++ PG 
Sbjct: 47  FEKNNIDDFLQQQLKEQELSKIKRKEFLIIGTFLSNVGKSSLLNALLGRNVAETSNYPGK 106

Query: 254 TRDV 257
           TR +
Sbjct: 107 TRSL 110


>gi|296810788|ref|XP_002845732.1| nucleolar GTP-binding protein 2 [Arthroderma otae CBS 113480]
 gi|238843120|gb|EEQ32782.1| nucleolar GTP-binding protein 2 [Arthroderma otae CBS 113480]
          Length = 584

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 338 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLI---DCPG 394

Query: 277 -IRETDDIVEKEGIKRTFLEVENAD 300
            +  +++  E++ + R  + VEN +
Sbjct: 395 VVPPSNNATEEDILLRGVVRVENVE 419


>gi|223557993|gb|ACM90999.1| GTP-binding cell division protein [uncultured bacterium URE4]
          Length = 198

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 33/171 (19%)

Query: 225 LGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           +G SN GKSSL NAL     +A  +  PG T+ V    ++   YLV +      R  D  
Sbjct: 29  IGRSNVGKSSLINALTGNSKLAKTSQTPGKTQLVNHFLINDNWYLVDLPGYGYARLPDK- 87

Query: 284 VEKEGIKRTFLEVENA--DLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDL 331
            E+  ++    +  N   +L++L   ++S+ ++             K I F  I TK+D 
Sbjct: 88  -ERAKLRHIIWDYVNRSEELVMLFVLLDSRHDMQEVDLRFISELGEKGIPFGLIFTKADK 146

Query: 332 Y-STYT------------EEYDHLI-----SSFTGEGLEELINKIKSILSN 364
             +T T            EE++ L      SS +G G EE++N I ++L N
Sbjct: 147 QGATVTAAQVEKNKARLLEEWEELPPVFISSSVSGLGREEILNYIGTVLQN 197


>gi|94990505|ref|YP_598605.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS10270]
 gi|94544013|gb|ABF34061.1| GTP-binding protein [Streptococcus pyogenes MGAS10270]
          Length = 282

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I +   + +I+G  NAGKS+L N LA K +A+V + PG T+    +  + E   ++I DT
Sbjct: 117 IQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKE---LEILDT 173

Query: 275 AGI 277
            GI
Sbjct: 174 PGI 176


>gi|330720075|gb|EGG98493.1| GTP-binding protein EngA [gamma proteobacterium IMCC2047]
          Length = 272

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENA 299
           D  +V D PGTTRD + I  +  G    + DTAG+R   ++   VEK  I +T   + +A
Sbjct: 5   DRVVVYDQPGTTRDSVYIPYERHGKPYTLIDTAGVRRRKNVKETVEKFSIIKTLQAISDA 64

Query: 300 DLILLL 305
           ++++ +
Sbjct: 65  NVVVCV 70


>gi|238926237|ref|ZP_04657997.1| GTPase [Selenomonas flueggei ATCC 43531]
 gi|238885917|gb|EEQ49555.1| GTPase [Selenomonas flueggei ATCC 43531]
          Length = 207

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 22/127 (17%)

Query: 225 LGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDV------LTIDLDLEGYLVKISDTAGI 277
           +G SN GKSSL N+L + + +A V+  PG T+ +      + ID   E + V + D  G 
Sbjct: 33  IGRSNVGKSSLINSLTRIRQLAHVSGKPGKTQTINFYELLMRIDGGEERHPVHLVDLPGY 92

Query: 278 ------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF--------I 323
                 RE+ +   K  I+  FL  EN   + LL +I      S  K  D+        +
Sbjct: 93  GYAKAARESRNTWAK-FIEEYFLHAENLHFVALLLDIRHAPMTSDCKMFDWLVAHDIPVL 151

Query: 324 FIGTKSD 330
            I TK+D
Sbjct: 152 VIATKAD 158


>gi|172036243|ref|YP_001802744.1| GTP-binding protein [Cyanothece sp. ATCC 51142]
 gi|171697697|gb|ACB50678.1| GTP-binding protein [Cyanothece sp. ATCC 51142]
          Length = 530

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 5/114 (4%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRD 256
           N + SH S+ +     +    I I+G++NAGKS+L NAL   +V     +   +  TTR 
Sbjct: 336 NKLQSHRSRLRQQRQKQEVPTIAIVGYTNAGKSTLINALTNAEVYTADQLFATLDPTTRR 395

Query: 257 VLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  +D D  + Y   ++DT G          +  + T  EV  AD +L L +++
Sbjct: 396 LSGVDSDTQQPYTFLLTDTVGFIHELPPSLVDAFRATLEEVTEADALLHLVDLS 449


>gi|75907298|ref|YP_321594.1| small GTP-binding protein domain-containing protein [Anabaena
           variabilis ATCC 29413]
 gi|75701023|gb|ABA20699.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC
           29413]
          Length = 206

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +Q    + + +  +I ++G  N GKS LFNAL    V  V++ PGTT +V      +   
Sbjct: 26  NQQPFTQDVSHNPQIALVGMPNVGKSVLFNALTGIYVT-VSNYPGTTVEVSRGLAQIGEQ 84

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            + + DT G+     I E+E + R  L +E
Sbjct: 85  SITVIDTPGMYSLLPISEEEKVARDLLLLE 114


>gi|21242079|ref|NP_641661.1| GTP-binding protein Era [Xanthomonas axonopodis pv. citri str. 306]
 gi|294626962|ref|ZP_06705553.1| GTP-binding protein Era [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294664536|ref|ZP_06729881.1| GTP-binding protein Era [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|25008431|sp|Q8PMU9|ERA_XANAC RecName: Full=GTPase Era
 gi|21107486|gb|AAM36197.1| GTP-binding protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|292598822|gb|EFF42968.1| GTP-binding protein Era [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292605698|gb|EFF49004.1| GTP-binding protein Era [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 299

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+L NAL    V+IV++ P TTR  +L I    EG LV + DT G+
Sbjct: 13  VAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLV-DTPGL 68


>gi|320185249|gb|EFW60026.1| NgrB [Shigella flexneri CDC 796-83]
          Length = 225

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 38/70 (54%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K+ E I     I ++G + AGKSS+ NAL K +V  V+D+   TR+V  + +    + +K
Sbjct: 71  KISEAIDYEPVIGVMGKTGAGKSSVCNALFKGEVCAVSDVEACTREVQELRIRFGKHSLK 130

Query: 271 ISDTAGIRET 280
           I D   + E 
Sbjct: 131 IIDIPSVGEN 140


>gi|269863458|ref|XP_002651230.1| GTPase, predicted [Enterocytozoon bieneusi H348]
 gi|220064911|gb|EED42826.1| GTPase, predicted [Enterocytozoon bieneusi H348]
          Length = 381

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N GKSSL N L  K V  V  IPG T+    I L  + YL+   D+ G+   +++ 
Sbjct: 259 VGYPNIGKSSLINILKNKQVCKVAPIPGETKVWQYITLMKDVYLI---DSPGVVPINNL- 314

Query: 285 EKEGIKRTFLEVEN-ADLILLLKEI 308
            KE +    + VEN AD    + EI
Sbjct: 315 -KEAVLHGAVRVENLADPDFYVAEI 338


>gi|213961788|ref|ZP_03390054.1| GTP-binding protein Era [Capnocytophaga sputigena Capno]
 gi|213955577|gb|EEB66893.1| GTP-binding protein Era [Capnocytophaga sputigena Capno]
          Length = 293

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   +  + + V  SDT GI +    
Sbjct: 9   IIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRIFGIVSGDDFQVVFSDTPGIIKPSYA 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKK 312
           ++   +       E+AD+++ + EI  K+
Sbjct: 69  LQASMMDFVKSAFEDADILIYMVEIGEKE 97


>gi|167759231|ref|ZP_02431358.1| hypothetical protein CLOSCI_01578 [Clostridium scindens ATCC 35704]
 gi|167663105|gb|EDS07235.1| hypothetical protein CLOSCI_01578 [Clostridium scindens ATCC 35704]
          Length = 298

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   +   DT GI +  
Sbjct: 10  VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
           + + +  +      +   D++L L E
Sbjct: 70  NKLGEYMVNVAERTLNEVDVVLWLVE 95


>gi|83286548|ref|XP_730210.1| translation initiation factor IF-2 [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23489867|gb|EAA21775.1| translation initiation factor IF-2-related [Plasmodium yoelii
           yoelii]
          Length = 1018

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 100/235 (42%), Gaps = 59/235 (25%)

Query: 217 RNGYKIVI--LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           RN Y  V+  +GH N GK++L + +   ++A   +    T+++  I  +LE Y     DT
Sbjct: 137 RNNYYTVVSVIGHINHGKTTLLDKVTNNNLANY-EAGCITQNIKPIHFELEPYKFTFLDT 195

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL------KEINSKKEISFPK--NIDFIFIG 326
            G +    + +    +  FL    +D++++L       EI +++ I +    +I  IF  
Sbjct: 196 PGHK----VFQILRGRAAFL----SDILIILISLEVGAEIQTEEAIKYADKFSIPVIFAL 247

Query: 327 TKSDLYS-------------------------TYTEEYDH--LISSFTGEGLEELINKIK 359
            K+D+Y                           Y+ E D+   ISS TG  L  LIN+I 
Sbjct: 248 NKADIYKENESVVKAELKNQCNKMFDEGTLKHNYSNEIDNSITISSLTGYNLPRLINRIY 307

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQT-------VRYLEMASLNEKDCGLDIIAE 407
            I  N       ++P H  ++++ +Q        +R +  A+ NE D   +I  E
Sbjct: 308 FIKQN------INLPYHSANVFYNNQNGIKKNAQLRDITSANNNETDSFYNIHDE 356


>gi|262340870|ref|YP_003283725.1| GTP-binding protein [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272207|gb|ACY40115.1| GTP-binding protein [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 208

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 24/140 (17%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           S   +   I N  +   +G SN GKSSL N +  +K +A V+  PG T+ +    ++ + 
Sbjct: 11  SSKTINVFIHNFPEYAFVGRSNVGKSSLINWITGRKKIAKVSSYPGRTQYINHFLINNQW 70

Query: 267 YLV-----------KISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-----LLKEINS 310
           YL+           KI + A    +D I  ++ +   FL +++  LI       ++++N+
Sbjct: 71  YLIDLPGYGFFAEKKIKEKAQKLISDYIFHRKNLVGLFLLIDSRFLIQQIDLDFIQKLNN 130

Query: 311 KKEISFPKNIDFIFIGTKSD 330
           KK       +DF  + TK+D
Sbjct: 131 KK-------MDFCIVFTKTD 143


>gi|302551316|ref|ZP_07303658.1| GTP-binding protein Era [Streptomyces viridochromogenes DSM 40736]
 gi|302468934|gb|EFL32027.1| GTP-binding protein Era [Streptomyces viridochromogenes DSM 40736]
          Length = 320

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           GE +        +G  NAGKS+L NAL  + VAI  + P TTR  +   +      + + 
Sbjct: 15  GETVHRAGFACFVGRPNAGKSTLTNALVGQKVAITANQPQTTRHTVRGIVHRPDAQLILV 74

Query: 273 DTAGIRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK---------KEISFPKNI 320
           DT G+ +   ++ +   + ++ T+ EV   D+I      N K         KE++  K  
Sbjct: 75  DTPGLHKPRTLLGERLNDVVRTTWAEV---DVIGFCLPANEKLGPGDRFIAKELASIKKT 131

Query: 321 DFIFIGTKSDL 331
             I I TK+DL
Sbjct: 132 PKIAIVTKTDL 142


>gi|297559688|ref|YP_003678662.1| GTP-binding protein Era [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844136|gb|ADH66156.1| GTP-binding protein Era [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 322

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 10/127 (7%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+   + G  N GKS+L NAL  + VAI ++ P TTR  +   +      + I D
Sbjct: 20  EGFRSGFACFV-GRPNVGKSTLMNALVGQKVAITSNRPQTTRRTVRGIVHRPDAQLIIVD 78

Query: 274 TAGIRETDDIVEKE---GIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIF 324
           T G+ +   ++ +     ++ T +EV+     L   E   +      KE++   N   + 
Sbjct: 79  TPGLHKPRTLLGERLDSLVRSTLVEVDVIAFCLPANEPIGRGDTYIAKELAEQTNTPVVA 138

Query: 325 IGTKSDL 331
           + TK+DL
Sbjct: 139 LVTKTDL 145


>gi|157870969|ref|XP_001684034.1| GTP-binding protein-like protein [Leishmania major]
 gi|68127102|emb|CAJ04581.1| putative ras-like small GTPases [Leishmania major strain Friedlin]
          Length = 497

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G +N+GK+SL N L   +     D   TTRD + I    +G  +K+ DTAG+   
Sbjct: 230 RVAIVGRTNSGKTSLVNRLVGYERNRAADESNTTRDPIEIACMYKGRKLKLIDTAGLARQ 289

Query: 281 DDIVEKEGIKR 291
               ++E + R
Sbjct: 290 RYRTDREFLSR 300



 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 15/96 (15%)

Query: 221 KIVILGHSNAGKSSLFNAL-------AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           ++ I+G  N+GKSSLFN L       AKK+  IV D  G TRD +     L+     + D
Sbjct: 30  RVAIVGRMNSGKSSLFNLLCEDPTMPAKKN--IVKDFNGITRDCVEAHAALDDLHFTVID 87

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           T G      ++  + ++  F  VE AD  + +  ++
Sbjct: 88  TPG------LLGGKLVEEAFRTVETADAAIFVTAVD 117


>gi|29828628|ref|NP_823262.1| ribosome-associated GTPase [Streptomyces avermitilis MA-4680]
 gi|29605732|dbj|BAC69797.1| putative ATP/GTP-binding protein [Streptomyces avermitilis MA-4680]
          Length = 375

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 203 ISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV---TDIPGTTRDV 257
           +SS++ +G   L  ++  G   V+LG S AGKS+L NAL  +DV  V    D+ G  R  
Sbjct: 193 VSSNLGEGLDVLAAVLSGGTS-VLLGQSGAGKSTLANALLGEDVMKVHATRDVDGKGRHT 251

Query: 258 LTID--LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            T    L L G  V I DT G+R       + G+ + F E+E
Sbjct: 252 TTTRNLLALPGGGVLI-DTPGLRGVGLWDAETGVNQVFSEIE 292


>gi|291166725|gb|EFE28771.1| GTP-binding protein Era [Filifactor alocis ATCC 35896]
          Length = 301

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 51/89 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++ N +  + V+IV++ P TTR+ ++   + E   +   DT G++   
Sbjct: 10  VSIIGRPNVGKSTILNWIIGEKVSIVSNKPQTTRNRISGIYNDEDCQIVFLDTPGMQNPR 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           + + K  +K +   +++ DLI+ + + +S
Sbjct: 70  NKLGKYMLKASTSTMKDTDLIMCVVDTSS 98


>gi|94985925|ref|YP_605289.1| GTP-binding protein Era [Deinococcus geothermalis DSM 11300]
 gi|189037266|sp|Q1IXB4|ERA_DEIGD RecName: Full=GTPase Era
 gi|94556206|gb|ABF46120.1| GTP-binding protein Era [Deinococcus geothermalis DSM 11300]
          Length = 309

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 17/162 (10%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           GE   +   + I+G  N GKS+L NA     VA  +  P TTR  +      +   +   
Sbjct: 11  GETPTHAGFVAIVGKPNVGKSTLLNAFLNTKVAPTSPRPQTTRRGVRGIYSTDTQQIVFV 70

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLL----------KEINSKKEISFPKNIDF 322
           DT G+ +  D + K   +     + + D IL +           E+ +++    PK +  
Sbjct: 71  DTPGLHKPKDALGKYMNQEVQSALADVDAILWVVDLRHPPTEEDELVARQVRDLPKPL-- 128

Query: 323 IFIGTKSDLYSTYTEE----YDHLISSFTGEGLEELINKIKS 360
             IG K D  + Y +E    Y  L+   TGE  E +++   S
Sbjct: 129 FLIGNKVDA-AKYPDEAMRLYRALLEGRTGETHERMLSAQNS 169


>gi|317482192|ref|ZP_07941214.1| GTP-binding protein Era [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916330|gb|EFV37730.1| GTP-binding protein Era [Bifidobacterium sp. 12_1_47BFAA]
          Length = 354

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL  K +AI +  P TTR  +   L  +   + + DT G
Sbjct: 45  RSGF-VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTPG 103

Query: 277 I 277
           I
Sbjct: 104 I 104


>gi|298676045|ref|YP_003727795.1| ferrous iron transport protein B [Methanohalobium evestigatum
           Z-7303]
 gi|298289033|gb|ADI74999.1| ferrous iron transport protein B [Methanohalobium evestigatum
           Z-7303]
          Length = 681

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV++G  N GKS +FNAL+    AI ++ PGTT ++   D  +     +I DT G    
Sbjct: 25  RIVLVGSPNVGKSVIFNALS-DSYAIASNYPGTTVEISKGDGVIGNKKYEIIDTPGSYSL 83

Query: 281 DDIVEKEGI-KRTFLE 295
             I E+E + +R F E
Sbjct: 84  LPITEEERVAQRLFFE 99


>gi|261330044|emb|CBH13028.1| GTP-binding protein, putative [Trypanosoma brucei gambiense DAL972]
          Length = 601

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKSSL N L +K V  V  IPG T+    + L    +L+        RET++ 
Sbjct: 323 IIGYPNVGKSSLINTLRRKFVCKVAPIPGETKVWQYVALTRNIFLIDCPGVVYDRETNND 382

Query: 284 VEKEGIKRTFLEVE---NADLILLLKEINSKKEISFPKNI 320
           V  + + +  + VE   NAD   +   +N+  +I  PK+I
Sbjct: 383 V--QAVLKGVVRVERLGNADKTDV---VNTVLDIVKPKDI 417


>gi|227328580|ref|ZP_03832604.1| GTP-binding protein Era [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 301

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 37/193 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  + + +  EG Y     DT G+   
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRI-MGIHTEGPYQAIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I EK  I R             L    +   I   + I F+  GT       + ++ +
Sbjct: 68  --IEEKRAINR-------------LMNRAASSSIGDVELIIFVVEGTH------WNDDDE 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++    + L  L  INK+ ++ ++K K LP        H+  LSQ + +L++  ++ E
Sbjct: 107 MVLNKLRDQKLPVLLAINKVDNV-TDKTKLLP--------HIQFLSQQMDFLDVVPISAE 157

Query: 398 KDCGLDIIAENLR 410
           K   +D IA  +R
Sbjct: 158 KGTNVDTIASIVR 170


>gi|149190206|ref|ZP_01868481.1| ribosomal biogenesis GTPase [Vibrio shilonii AK1]
 gi|148835953|gb|EDL52915.1| ribosomal biogenesis GTPase [Vibrio shilonii AK1]
          Length = 312

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 9/90 (10%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           S+ + ++ IL L   ++ H  + ++G+ IR     +I+G  N GKS++ N LA + +A+ 
Sbjct: 89  SNSQEVHKILELCRKLAPH--REEIGKNIRT----MIMGIPNVGKSTIINTLAGRTIAVT 142

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            + P  TR    I+L   G +  +SDT GI
Sbjct: 143 GNQPAVTRRQQRINLQ-NGIV--LSDTPGI 169


>gi|20807587|ref|NP_622758.1| GTPase [Thermoanaerobacter tengcongensis MB4]
 gi|20516126|gb|AAM24362.1| GTPases [Thermoanaerobacter tengcongensis MB4]
          Length = 428

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 6/92 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG-IRE 279
           + I+G++NAGKS+L NAL   D A V D    T D     L L  G  V ++DT G IR+
Sbjct: 216 VAIVGYTNAGKSTLLNALTGAD-AYVEDKLFATLDPTARKLVLPSGREVILTDTVGFIRK 274

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
              D+V  E  K T  EV+ ADL+L + ++ S
Sbjct: 275 LPHDLV--EAFKSTLEEVKYADLLLHVIDVTS 304


>gi|326334918|ref|ZP_08201119.1| GTP-binding protein Era [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692955|gb|EGD34893.1| GTP-binding protein Era [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 292

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G+ N GKS+L NAL  + ++I+T    TTR  +   +  E + +  SDT GI +  
Sbjct: 7   INIIGNPNVGKSTLLNALVGERLSIITAKAQTTRHRIFGIVSGEDFQMIFSDTPGIIKPA 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
             ++   +       E+AD+++ + EI  K
Sbjct: 67  YQLQSSMMDFVRDAFEDADILIYMVEIGEK 96


>gi|325274002|ref|ZP_08140160.1| GTP-binding protein YsxC [Pseudomonas sp. TJI-51]
 gi|324100855|gb|EGB98543.1| GTP-binding protein YsxC [Pseudomonas sp. TJI-51]
          Length = 210

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +V N IL L       +S  K+ +   + GY++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QVKNPILGLCQKAKFALSAAKVEQCPDDQGYEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTRDVLTIDLDLEGYLVKI 271
            PG T+ +    LD E  LV +
Sbjct: 62  TPGRTQLLNFFSLDDERRLVDL 83


>gi|281210359|gb|EFA84526.1| guanine nucleotide binding protein 3 [Polysphondylium pallidum
           PN500]
          Length = 609

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + I+G+ N GKSSL N+L +     V   PG T+    + LD     VK+ D+ 
Sbjct: 251 IKTSVAVGIIGYPNVGKSSLINSLKRARAVSVAPTPGHTKVAQEVHLDKN---VKLLDSP 307

Query: 276 GIRETDDIVEKEGIKRTFLEVE 297
           GI      ++   I R  ++VE
Sbjct: 308 GIVPIKGEIDANVILRNVVKVE 329


>gi|116512137|ref|YP_809353.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107791|gb|ABJ72931.1| Ras superfamily GTP-binding protein YlqF [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 283

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
           SS   +WI+     + F+   ++  EE     +++K +    +  K  ++  ++  K   
Sbjct: 66  SSKVAEWIEYFDG-QGFVTLAINSKEE-----YTAKRL---TVAAKKLMADKVAHDKERG 116

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I     + +I+G  NAGKS+L N LA K VA+  + PG T+    I  + E   +++ DT
Sbjct: 117 IAHTTLRTMIIGIPNAGKSTLMNRLAGKKVAVTGNRPGVTKGQQWIRTNKE---LELLDT 173

Query: 275 AGI 277
            GI
Sbjct: 174 PGI 176


>gi|325956928|ref|YP_004292340.1| GTPase Era [Lactobacillus acidophilus 30SC]
 gi|325333493|gb|ADZ07401.1| GTPase Era [Lactobacillus acidophilus 30SC]
          Length = 301

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 44/86 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + VAI ++ P TTR+ ++     +   +   DT GI +  
Sbjct: 11  VALIGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDDMQIVFVDTPGIFKPH 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
             ++    K +   + + DL+L + E
Sbjct: 71  SKLDDYMDKASLSSLNDVDLVLFMVE 96


>gi|256819059|ref|YP_003140338.1| GTP-binding protein Era [Capnocytophaga ochracea DSM 7271]
 gi|256580642|gb|ACU91777.1| GTP-binding protein Era [Capnocytophaga ochracea DSM 7271]
          Length = 293

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   +  + + V  SDT GI +    
Sbjct: 9   IIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRIFGIVSGDDFQVVFSDTPGIIKPSYA 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKK 312
           ++   +       E+AD+++ + EI  K+
Sbjct: 69  LQASMMDFVKSAFEDADILIYMVEIGEKE 97


>gi|167526417|ref|XP_001747542.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773988|gb|EDQ87622.1| predicted protein [Monosiga brevicollis MX1]
          Length = 551

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ I+G+ N GKSSL N+L +  V  V   PG T+ +  + LD     VK+ D+ 
Sbjct: 259 IKTAIRVGIVGYPNVGKSSLINSLKRSRVCGVGARPGFTKTLQEVALDKR---VKLIDSP 315

Query: 276 GI 277
           GI
Sbjct: 316 GI 317


>gi|163840661|ref|YP_001625066.1| GTP-binding protein Era [Renibacterium salmoninarum ATCC 33209]
 gi|162954137|gb|ABY23652.1| GTP-binding protein [Renibacterium salmoninarum ATCC 33209]
          Length = 326

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+  V+ G  NAGKS+L NAL  + VAI +  P TTR  +   +  + Y + + DT G
Sbjct: 24  RAGFA-VLAGRPNAGKSTLTNALVGQKVAITSAKPQTTRHTIRGIVHRDEYQLILVDTPG 82

Query: 277 I 277
           +
Sbjct: 83  L 83


>gi|323490066|ref|ZP_08095287.1| GTP-binding protein Era-like protein (Bex protein) [Planococcus
           donghaensis MPA1U2]
 gi|323396362|gb|EGA89187.1| GTP-binding protein Era-like protein (Bex protein) [Planococcus
           donghaensis MPA1U2]
          Length = 305

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 83/197 (42%), Gaps = 28/197 (14%)

Query: 218 NGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           NG+K   I I+G  N GKS+  N +  + +AI++D P TTR+ +   +      +   DT
Sbjct: 6   NGFKSGFISIIGRPNVGKSTFLNRVVGQKIAIMSDKPQTTRNKVQGVVTTNDSQMIFIDT 65

Query: 275 AGIRET----DDIVEKEGIKRTFLEV---------------ENADLILLLKEINSKKEIS 315
            GI E      D + K   K TF EV               E+  ++ +LK I+    + 
Sbjct: 66  PGINEPRHKLGDFMLKVA-KNTFREVDVLLFVASGVDRVGKEDRYVLEMLKGIDVPVFLV 124

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371
             K ID +       +  +Y  E+D      IS+  G  +E L+ KI   L    +  P 
Sbjct: 125 INK-IDQVHPDNLPKIIESYRNEFDFAEAIPISALEGNNVETLLAKINERLPEGPQYYPA 183

Query: 372 SIPSHKRHLYHLSQTVR 388
              +     + +S+ +R
Sbjct: 184 DQITDHPERFIISELIR 200


>gi|38257429|sp|Q82LC4|RSGA_STRAW RecName: Full=Putative ribosome biogenesis GTPase RsgA
          Length = 370

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 203 ISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV---TDIPGTTRDV 257
           +SS++ +G   L  ++  G   V+LG S AGKS+L NAL  +DV  V    D+ G  R  
Sbjct: 188 VSSNLGEGLDVLAAVLSGGTS-VLLGQSGAGKSTLANALLGEDVMKVHATRDVDGKGRHT 246

Query: 258 LTID--LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            T    L L G  V I DT G+R       + G+ + F E+E
Sbjct: 247 TTTRNLLALPGGGVLI-DTPGLRGVGLWDAETGVNQVFSEIE 287


>gi|332704121|ref|ZP_08424209.1| GTP-binding protein engB [Desulfovibrio africanus str. Walvis Bay]
 gi|332554270|gb|EGJ51314.1| GTP-binding protein engB [Desulfovibrio africanus str. Walvis Bay]
          Length = 196

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +I + G SN GKSSL NALA  K +A V+  PG TR +    +   GY
Sbjct: 24  QIALAGRSNVGKSSLINALAGTKKLAKVSGTPGKTRSINLYHVSPAGY 71


>gi|226312943|ref|YP_002772837.1| GTP-binding protein HflX [Brevibacillus brevis NBRC 100599]
 gi|226095891|dbj|BAH44333.1| probable GTP-binding protein HflX [Brevibacillus brevis NBRC
           100599]
          Length = 430

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 32/184 (17%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           N ++I ++G++NAGKS++ N L   +  +  D    T D  T  L+L  G  V ++DT G
Sbjct: 199 NVFQIALVGYTNAGKSTILNKLTNAN-TLQEDKLFATLDPTTRQLELPSGLDVLLTDTVG 257

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFP 317
             +          + T   V+ ADLIL                   +L+E+ +++     
Sbjct: 258 FIQDLPTSLVAAFRSTLEGVKEADLILHVVDSHHPDFQVHMEVVDKILRELKAEE----- 312

Query: 318 KNIDFIFIGTKSDLYS--TYTEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
             I  + +  K+D+ +  +Y    D   LIS+   + L++L+ +I+S     F  +   +
Sbjct: 313 --IPHLVVFNKADMLTEGSYLPRADESILISAMREDDLKQLLTRIESFALQSFNAMKLRV 370

Query: 374 PSHK 377
           P  +
Sbjct: 371 PVER 374


>gi|126665610|ref|ZP_01736592.1| GTP-binding protein, HSR1-related [Marinobacter sp. ELB17]
 gi|126630238|gb|EBA00854.1| GTP-binding protein, HSR1-related [Marinobacter sp. ELB17]
          Length = 479

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETD 281
            ++GH N GKSS+   L++ D   +   PGTTR      L ++G  L  + DT G +   
Sbjct: 8   AVVGHPNKGKSSVVATLSQNDAIAIALEPGTTRRSHAYPLQVDGQVLYTLVDTPGFQRPR 67

Query: 282 DIVE 285
            ++E
Sbjct: 68  RVLE 71


>gi|124024983|ref|YP_001014099.1| ribosomal biogenesis GTPase [Prochlorococcus marinus str. NATL1A]
 gi|123960051|gb|ABM74834.1| Predicted GTPases [Prochlorococcus marinus str. NATL1A]
          Length = 287

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN---DISSHISQGKLGEIIRN-GY 220
           + +I ++   D     E  V  +   +    +L +KN        ++Q +L   ++N   
Sbjct: 65  MINIDAYQAWDKKLRSEGKVPWWCDAKAGTGVLQIKNAAIRAGQELNQRRLDRGMKNRAI 124

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI----DLDL 264
           +++ LG  N GKS+L N L KK V   +  PG TR +  +    DLDL
Sbjct: 125 RVLTLGFPNVGKSALINRLVKKKVVSSSRKPGVTRSLRWVRLGQDLDL 172


>gi|157870496|ref|XP_001683798.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68126865|emb|CAJ04710.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 443

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--R 278
           ++  LG  NAGK+SL N++A  +V  V++  G+T+D       +    + + DT GI  R
Sbjct: 154 RVAFLGPQNAGKTSLVNSMALSNVGAVSNRYGSTKDWTKAVATVHETQLLLLDTPGIVPR 213

Query: 279 ETDDIVEK--EGIKRTFLEVENADLILL 304
           +T  +  K   G  + +  +  +DL++L
Sbjct: 214 DTQRVRRKFASGTAKAYDALFVSDLVVL 241


>gi|26986869|ref|NP_742294.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas putida
           KT2440]
 gi|38372202|sp|Q88RK5|ENGB_PSEPK RecName: Full=Probable GTP-binding protein EngB
 gi|24981471|gb|AAN65758.1|AE016202_1 GTP-binding protein, putative [Pseudomonas putida KT2440]
 gi|313496496|gb|ADR57862.1| EngB [Pseudomonas putida BIRD-1]
          Length = 210

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +V N IL L       +S  K+ +   + GY++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QVKNPILGLCQKAKFALSAAKVEQCPDDQGYEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTRDVLTIDLDLEGYLVKI 271
            PG T+ +    LD E  LV +
Sbjct: 62  TPGRTQLLNFFSLDDERRLVDL 83


>gi|296393368|ref|YP_003658252.1| GTP-binding proten HflX [Segniliparus rotundus DSM 44985]
 gi|296180515|gb|ADG97421.1| GTP-binding proten HflX [Segniliparus rotundus DSM 44985]
          Length = 511

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 33/195 (16%)

Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           RNG    VI+G++NAGKSSL  AL    V I  ++  T                 I+DT 
Sbjct: 275 RNGVPSAVIVGYTNAGKSSLLGALTGASVIIRDELFATLDPTTRKSWGETSGSFTITDTV 334

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISF 316
           G          E    T  E   AD+++                   +L ++ +K +  +
Sbjct: 335 GFVRHLPTQLVEAFASTLEEATGADVLVHVVDASDPRPADQIRVVREILGDVFAKAQTPW 394

Query: 317 PKNI------DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK----- 365
           P  I      D +   T + L   + E    L+S+ TGEG++EL  +I   L+ +     
Sbjct: 395 PTEIVALNKSDAVDEATLAGLRIAFPEAT--LVSARTGEGIDELKRRIGEALAVRSGAAC 452

Query: 366 FKKLPFSIPSHKRHL 380
             +L  ++P  +  L
Sbjct: 453 LVELSLAVPEDRPDL 467


>gi|260221257|emb|CBA29640.1| GTP-binding protein hflX [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 390

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTA 275
           + + I ++G++NAGKS+LFNAL K   A   D    T D  T  L L      V +SDT 
Sbjct: 198 DAFNISLIGYTNAGKSTLFNALVKAR-AYAADQLFATLDTTTRQLYLGEANRSVSLSDTV 256

Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320
           G IR+    +  +  + T  E  +ADL+L    +     + FP+ I
Sbjct: 257 GFIRDLPHGL-VDAFQATLQEAIDADLLL---HVVDAANVDFPEQI 298


>gi|226953864|ref|ZP_03824328.1| GTPase, involved in coordination of cell cycle (EngB)
           [Acinetobacter sp. ATCC 27244]
 gi|226835347|gb|EEH67730.1| GTPase, involved in coordination of cell cycle (EngB)
           [Acinetobacter sp. ATCC 27244]
          Length = 258

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 18/101 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR----------DVLTIDLDLEGY 267
           GY+I   G SNAGKSS  NAL  KK +A  +  PG T+          D   +DL   GY
Sbjct: 61  GYEIAFAGRSNAGKSSAINALTNKKQLARASKKPGRTQMINFFSLGNPDQRLVDLPGYGY 120

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
                  A + E+  IV ++ ++   +  ++   ++LL +I
Sbjct: 121 -------AAVPESMKIVWQKELENYLIHRKSLQGLVLLMDI 154


>gi|154248312|ref|YP_001419270.1| small GTP-binding protein [Xanthobacter autotrophicus Py2]
 gi|154162397|gb|ABS69613.1| small GTP-binding protein [Xanthobacter autotrophicus Py2]
          Length = 457

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y IV L G++NAGKS+LFN L + +V +  D+   T D     +DL  G  + +SDT
Sbjct: 219 RVPYPIVALVGYTNAGKSTLFNRLTRAEV-MAKDLLFATLDPTLRAVDLPHGTRIILSDT 277

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
            G             + T  EV  ADLIL +++I+
Sbjct: 278 VGFISELPTQLVAAFRATLEEVLEADLILHVRDIS 312


>gi|300312251|ref|YP_003776343.1| GTP-binding protein [Herbaspirillum seropedicae SmR1]
 gi|300075036|gb|ADJ64435.1| GTP-binding protein [Herbaspirillum seropedicae SmR1]
          Length = 374

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + + ++G++NAGKS++FNALAK  V     +   +  T+R V   ++   G++V ISDT 
Sbjct: 190 FSVSLVGYTNAGKSTIFNALAKAGVYAANQLFATLDTTSRRVYLGEV---GHVV-ISDTV 245

Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLIL 303
           G IRE    +  E  + T  E  +ADL+L
Sbjct: 246 GFIRELPHQL-VEAFRATLEETIHADLLL 273


>gi|229163284|ref|ZP_04291238.1| hypothetical protein bcere0009_40520 [Bacillus cereus R309803]
 gi|228620191|gb|EEK77063.1| hypothetical protein bcere0009_40520 [Bacillus cereus R309803]
          Length = 368

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 25/165 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R G  + ++G +N GKS+  N + K      ++V   +  PGTT D++ I LD E  
Sbjct: 155 EYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFIFI 325
           L    DT GI     +    G +   L     ++  ++ ++N ++ + F      D++  
Sbjct: 215 LY---DTPGIINHHQMAHYVGKESLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG 271

Query: 326 GTKS---------DLYSTYTEEYDHLISSFTGEGL-----EELIN 356
           G ++          ++ T  E+ D L  +  G+ L     EEL N
Sbjct: 272 GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPTPEELAN 316


>gi|239622043|ref|ZP_04665074.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|296454044|ref|YP_003661187.1| GTP-binding protein Era [Bifidobacterium longum subsp. longum
           JDM301]
 gi|239515234|gb|EEQ55101.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|296183475|gb|ADH00357.1| GTP-binding protein Era [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 354

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL  K +AI +  P TTR  +   L  +   + + DT G
Sbjct: 45  RSGF-VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTPG 103

Query: 277 I 277
           I
Sbjct: 104 I 104


>gi|86158536|ref|YP_465321.1| HSR1-like GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775047|gb|ABC81884.1| GTP-binding protein, HSR1-related protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 330

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 209 QGKLGEIIRNGY-KIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLE 265
           + ++G++ R G  + V++G +N+GKSSL  AL  AK ++A   + P TTRD L   ++ E
Sbjct: 69  RAEVGQVEREGAGQWVMIGPANSGKSSLLAALTHAKPEIA---EYPFTTRDPLPGMMEFE 125

Query: 266 GYLVKISDTAGI 277
              V++ DT  +
Sbjct: 126 DVQVQLVDTPAV 137


>gi|302386768|ref|YP_003822590.1| small GTP-binding protein [Clostridium saccharolyticum WM1]
 gi|302197396|gb|ADL04967.1| small GTP-binding protein [Clostridium saccharolyticum WM1]
          Length = 398

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 12/158 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I   G  NAGKSS+ NA+  +++++V+++ GTT D +   ++L   G +V I DT G  +
Sbjct: 14  IGFFGRRNAGKSSVVNAVTGQELSVVSEVKGTTTDPVYKSMELLPMGPVV-IIDTPGFDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDL 331
              + E   +++T   +  +D  +L+ +  + K         +   K I ++    K DL
Sbjct: 73  EGALGEMR-VRKTKQILNRSDCAVLVVDGAAGKTKTDEELIHLFQEKKIPYVVAYNKCDL 131

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
               T E    +S+  G  ++EL  +I  +++    K+
Sbjct: 132 TGEQTYEDGLSVSASEGLFIQELKERIGGLVNTGDTKM 169


>gi|293376339|ref|ZP_06622576.1| GTP-binding protein Era [Turicibacter sanguinis PC909]
 gi|325843413|ref|ZP_08167971.1| ribosome biogenesis GTPase Era [Turicibacter sp. HGF1]
 gi|292645028|gb|EFF63101.1| GTP-binding protein Era [Turicibacter sanguinis PC909]
 gi|325489335|gb|EGC91709.1| ribosome biogenesis GTPase Era [Turicibacter sp. HGF1]
          Length = 302

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 30/171 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKIS 272
           ++G+ + I+G  N GKS+  N +  K +AI++D P TTR+    V+T D D +   +   
Sbjct: 7   KSGF-VSIIGRPNVGKSTFLNQVLGKKIAIMSDKPQTTRNKIQGVIT-DADSQTIFI--- 61

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFI 323
           DT GI +    + K         +   D ++ +     K         + +   K   F+
Sbjct: 62  DTPGIHKPKHELGKFMTDLAIGTLNEVDAVMFMVNATEKVGKGDRFIIEHLQNVKQPVFL 121

Query: 324 FIG-----TKSDLYS---TYTEEYDHL----ISSFTGEGLEELINKIKSIL 362
            I      TK +L +   ++ EEY+      IS+ TGE +E LI+ IK  L
Sbjct: 122 VINKIDLITKEELLTVIASFREEYNFAGIIPISAMTGENVETLISVIKEAL 172


>gi|251797463|ref|YP_003012194.1| GTP-binding protein HSR1-related [Paenibacillus sp. JDR-2]
 gi|247545089|gb|ACT02108.1| GTP-binding protein HSR1-related [Paenibacillus sp. JDR-2]
          Length = 296

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 15/84 (17%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L+  I   +++G     IR     +I+G  N GKS+L N LA +++AI  D PG T+  
Sbjct: 103 ILQEKIDRQLAKGMNPRAIRG----LIVGIPNVGKSTLINRLAGRNIAITGDKPGVTKGQ 158

Query: 258 ----LTIDLDLEGYLVKISDTAGI 277
                T D+DL        DT GI
Sbjct: 159 QWIKTTFDMDL-------LDTPGI 175


>gi|22537173|ref|NP_688024.1| ribosomal biogenesis GTPase [Streptococcus agalactiae 2603V/R]
 gi|22534037|gb|AAM99896.1|AE014238_9 GTP-binding protein [Streptococcus agalactiae 2603V/R]
          Length = 283

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+    +  + E   ++I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKE---LEILDTPGI 176


>gi|71651291|ref|XP_814326.1| GTP-binding protein [Trypanosoma cruzi strain CL Brener]
 gi|70879289|gb|EAN92475.1| GTP-binding protein, putative [Trypanosoma cruzi]
          Length = 668

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           +H++ G  GE      +I ++GH N GKSSL N +    V  V+  PG T+ + TI +  
Sbjct: 465 THVTCGTGGE--EAFLRIGVVGHPNVGKSSLLNCIRGTKVVSVSATPGHTKHLQTIPIPS 522

Query: 265 EGYLVKISDTAGI 277
           E   V + D+ G+
Sbjct: 523 EH--VVLIDSPGL 533


>gi|71028302|ref|XP_763794.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350748|gb|EAN31511.1| hypothetical protein TP04_0159 [Theileria parva]
          Length = 538

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 26/175 (14%)

Query: 133 DLISSETEMQRRLSMEGMSGELSSL-YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           +L  SE   + R+++   S +L  L   QW   L + R+ I+  +  S   +++N S K 
Sbjct: 214 NLFESEFPTKPRITVFTHSDKLPKLGMAQW---LNYYRT-IDRSVHSSYNSNIKNASEKR 269

Query: 192 VLN------------DILFLKNDI---SSHISQGKLGEIIR-NGYKIVILGHSNAGKSSL 235
           VLN            +I++L+  I      +++ +L + +     +++++G  N GKSSL
Sbjct: 270 VLNRSMFVDAINGLKEIIYLRKHIFRMCRRVNERRLRKGLNPREIRVILMGMPNVGKSSL 329

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK-----ISDTAGIRETDDIVE 285
            N L  + V    ++PG T+++       +   +K     + DT GI  T+ I E
Sbjct: 330 VNRLLGRKVTKSYNVPGLTKNINIYKSTTKSNTIKNKRLLLIDTPGIVHTNLIGE 384


>gi|294651641|ref|ZP_06728945.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292822490|gb|EFF81389.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 258

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 18/101 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR----------DVLTIDLDLEGY 267
           GY+I   G SNAGKSS  NAL  KK +A  +  PG T+          D   +DL   GY
Sbjct: 61  GYEIAFAGRSNAGKSSAINALTNKKQLARASKKPGRTQMINFFSLGNPDQRLVDLPGYGY 120

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
                  A + E+  IV ++ ++   +  ++   ++LL +I
Sbjct: 121 -------AAVPESMKIVWQKELENYLIHRKSLQGLVLLMDI 154


>gi|284048899|ref|YP_003399238.1| ferrous iron transport protein B [Acidaminococcus fermentans DSM
           20731]
 gi|283953120|gb|ADB47923.1| ferrous iron transport protein B [Acidaminococcus fermentans DSM
           20731]
          Length = 721

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 12/89 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VKISDT 274
           +KI + G+ N GK++LFNAL   +   V + PG T +        EG L     V I D 
Sbjct: 3   FKIALAGNPNTGKTTLFNALTGSN-QFVGNWPGVTVE------KKEGKLMGHPDVIIQDL 55

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            GI        +E + RT+L  E  D IL
Sbjct: 56  PGIYSLSPYTLEEVVSRTYLVKERPDAIL 84


>gi|183601567|ref|ZP_02962937.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683898|ref|YP_002470281.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190934|ref|YP_002968328.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196340|ref|YP_002969895.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183219173|gb|EDT89814.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621548|gb|ACL29705.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249326|gb|ACS46266.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250894|gb|ACS47833.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295793923|gb|ADG33458.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis V9]
          Length = 331

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L  +   + + DT G
Sbjct: 20  RSGF-VAVVGRPNVGKSTLINALIGMQIAIASSRPETTRKAIRGVLTTDNAQIVLVDTPG 78

Query: 277 I 277
           I
Sbjct: 79  I 79


>gi|23098994|ref|NP_692460.1| hypothetical protein OB1539 [Oceanobacillus iheyensis HTE831]
 gi|22777222|dbj|BAC13495.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 285

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 14/89 (15%)

Query: 200 KNDISSHISQGKL------GEIIRNGY-----KIVILGHSNAGKSSLFNALAKKDVAIVT 248
           K DI   I Q KL       ++ R G      + +I+G  N GKS+L N LA K +A   
Sbjct: 90  KGDIQKVIQQAKLLGQDKMEKLKRKGIQPRPARAMIVGIPNVGKSTLINRLANKKIAKTG 149

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           D PG T+  L I +  +  L+   DT GI
Sbjct: 150 DRPGITKQQLWIKVKKDFELL---DTPGI 175


>gi|329925908|ref|ZP_08280618.1| ribosome biogenesis GTPase YqeH [Paenibacillus sp. HGF5]
 gi|328939559|gb|EGG35908.1| ribosome biogenesis GTPase YqeH [Paenibacillus sp. HGF5]
          Length = 375

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 75/189 (39%), Gaps = 32/189 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R    + ++G +N GKSSL N L +          V+  PGTT D++ I LD   Y++  
Sbjct: 164 RGDRDVYVVGATNVGKSSLINRLIRDYSDLDQELTVSRYPGTTLDMVNIPLDDGRYII-- 221

Query: 272 SDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI----- 323
            DT GI       ++V +E +     E     ++  L E  +     F +  DF+     
Sbjct: 222 -DTPGIVYPWRYSELVSREDLGTVMPENPLKPMVYQLNEGQTLFFGGFAR-FDFLQGEHQ 279

Query: 324 ----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
               FI  +  ++ T  E  D L +   GE           +LS   K+    +P   RH
Sbjct: 280 SFTCFISGRLGIHRTKLERADSLFAEHAGE-----------LLSPPTKERLEELPEWTRH 328

Query: 380 LYHLSQTVR 388
              + +  R
Sbjct: 329 EIRIPKGAR 337


>gi|328882360|emb|CCA55599.1| GTP-binding protein Era [Streptomyces venezuelae ATCC 10712]
          Length = 316

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 12/130 (9%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+   + G  NAGKS+L NAL  + VAI ++ P TTR  V  I    E  L+ + DT 
Sbjct: 16  RAGFACFV-GRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEAQLI-LVDTP 73

Query: 276 GIRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEISFPKNIDFIFIG 326
           G+ +   ++ +   + ++ T+ EV+       AD  L   +    KE++  K    + I 
Sbjct: 74  GLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKFIAKELAGIKKTPKVAII 133

Query: 327 TKSDLYSTYT 336
           TK+DL  + T
Sbjct: 134 TKTDLVDSKT 143


>gi|309792496|ref|ZP_07686960.1| GTP-binding proten HflX [Oscillochloris trichoides DG6]
 gi|308225484|gb|EFO79248.1| GTP-binding proten HflX [Oscillochloris trichoides DG6]
          Length = 458

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 27/188 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + ++G++NAGKS+L NAL+  DV +  D    T D  T  + L G + + ++DT G  + 
Sbjct: 236 VALVGYTNAGKSTLLNALSGADV-LTQDQLFATLDPTTRQVTLPGNHHILLTDTVGFIQK 294

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  E+  ADL+L + ++         + ++     +G       T   +
Sbjct: 295 LPTQLVAAFRATLEEINEADLLLHVVDLTHPNAQEHAQTVEKTLEELGVSRKATLTVLNK 354

Query: 339 YDHL-----------------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D L                       +S+  G GL++L  +I + LS     L   IP 
Sbjct: 355 VDKLEGVAAGEVADLVREMGLPSDVIAVSAQRGWGLDQLGERIVTALSEGMVALKVLIPY 414

Query: 376 HKRHLYHL 383
            +  L  L
Sbjct: 415 QRNDLVSL 422


>gi|303239340|ref|ZP_07325868.1| ribosome biogenesis GTP-binding protein YsxC [Acetivibrio
           cellulolyticus CD2]
 gi|302593126|gb|EFL62846.1| ribosome biogenesis GTP-binding protein YsxC [Acetivibrio
           cellulolyticus CD2]
          Length = 193

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 27/169 (15%)

Query: 221 KIVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++  +G SN GKSSL NA L +K +A +   PG TR++   ++D   Y V +      + 
Sbjct: 25  EVTFVGRSNVGKSSLINALLNRKSLARIASKPGKTREINFYNIDDVLYFVDLPGYGYAKV 84

Query: 280 TDDI--VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTK- 328
           + DI     E I+    E +   L+++L +I    S+ +    K     ++ FI + TK 
Sbjct: 85  SKDIKSAWGESIETYLNESKKLKLVVMLVDIRHSPSEDDQMMSKWLTSSSLPFIVVATKK 144

Query: 329 ------------SDLYSTYTEEYDHLI---SSFTGEGLEELINKIKSIL 362
                       SD+ +T      +++   SS T +G EE++N I S++
Sbjct: 145 DKIPRSKVKERLSDISNTLELGSGNMLIPFSSETKDGREEIMNYIASLV 193


>gi|221124472|ref|XP_002165796.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 539

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTA 275
           + + I ++G++NAGKS+LFNAL K   A   D    T D  T  L L      V +SDT 
Sbjct: 347 DAFNISLIGYTNAGKSTLFNALVKAR-AYAADQLFATLDTTTRQLYLGEANRSVSLSDTV 405

Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320
           G IR+    +  +  + T  E  +ADL+L    +     + FP+ I
Sbjct: 406 GFIRDLPHGL-VDAFQATLQEAIDADLLL---HVVDAANVDFPEQI 447



 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 27/45 (60%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           K+ + G  N GKS+L N    ++  +  D+PGTTRD +++  + E
Sbjct: 110 KLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERE 154


>gi|218282653|ref|ZP_03488868.1| hypothetical protein EUBIFOR_01454 [Eubacterium biforme DSM 3989]
 gi|218216416|gb|EEC89954.1| hypothetical protein EUBIFOR_01454 [Eubacterium biforme DSM 3989]
          Length = 404

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I   G  NAGKSS+ NA+  + +++V++I GTT D +   ++ L    V I DT G
Sbjct: 25  NRTHIGFFGLRNAGKSSVVNAITNQSMSLVSNIKGTTTDPVKKSMEILPIGPVVIVDTPG 84

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           + +   + E   IKRT   ++  D+ +L+ + N
Sbjct: 85  MDDEGTLGELR-IKRTLEVLKTIDMAVLVVDAN 116


>gi|218196848|gb|EEC79275.1| hypothetical protein OsI_20063 [Oryza sativa Indica Group]
          Length = 371

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 15/89 (16%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID------- 261
           +G L   +R G    I+G+ N GKSSL N L K+ +      PG TR++  +        
Sbjct: 206 KGLLPRAVRAG----IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELKWVRFGSDLEL 261

Query: 262 LDLEGYL-VKISD-TAGIRET--DDIVEK 286
           LD  G L ++ISD TA I+    DDI E+
Sbjct: 262 LDSPGILPMRISDQTAAIKLAICDDIGER 290


>gi|226493766|ref|NP_001148067.1| GTP-binding protein hflX [Zea mays]
 gi|195615598|gb|ACG29629.1| GTP-binding protein hflX [Zea mays]
 gi|195656523|gb|ACG47729.1| GTP-binding protein hflX [Zea mays]
          Length = 552

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 27/184 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G++NAGKS+L N L   DV     +   +  TTR VL  +    G    ++DT G 
Sbjct: 330 VSLVGYTNAGKSTLLNRLTGADVLAEDKLFATLDPTTRRVLMKN----GTEFLLTDTVGF 385

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI-------------SFPKNID 321
            +    +     + T  E+  + +I+ L +I+   ++++I             S PK + 
Sbjct: 386 IQKLPTMLVAAFRATLEEISESSVIVHLVDISHPLAQQQIDAVERVLKELDVESIPKLVV 445

Query: 322 FIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +  I    +  S   E        IS+  G+GLE+L N +++ L +    +   +P  K 
Sbjct: 446 WNKIDNTDEPLSVKEEAQKQGIICISAMNGDGLEDLCNAVQAKLKDSMVPIEAFVPYDKG 505

Query: 379 HLYH 382
            L +
Sbjct: 506 DLLN 509


>gi|148545398|ref|YP_001265500.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas putida
           F1]
 gi|166225971|sp|A5VWQ6|ENGB_PSEP1 RecName: Full=Probable GTP-binding protein EngB
 gi|148509456|gb|ABQ76316.1| cell division checkpoint GTPase YihA [Pseudomonas putida F1]
          Length = 210

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +V N IL L       +S  K+ +   + GY++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QVKNPILGLCQKAKFALSAAKVEQCPDDQGYEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTRDVLTIDLDLEGYLVKI 271
            PG T+ +    LD E  LV +
Sbjct: 62  TPGRTQLLNFFSLDDERRLVDL 83


>gi|37222111|gb|AAP49305.1| Uvs062 [uncultured bacterium]
          Length = 304

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +    
Sbjct: 21  IIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQLVLSDTPGIIKPAYE 80

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311
           +++  +       E+AD+++ + EI  +
Sbjct: 81  MQESMMNFVKSAFEDADILIYMVEIGEQ 108


>gi|23465433|ref|NP_696036.1| GTP-binding protein Era [Bifidobacterium longum NCC2705]
 gi|46191170|ref|ZP_00120253.2| COG1159: GTPase [Bifidobacterium longum DJO10A]
 gi|189439456|ref|YP_001954537.1| GTP-binding protein Era [Bifidobacterium longum DJO10A]
 gi|227545909|ref|ZP_03975958.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|312132864|ref|YP_004000203.1| era [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688983|ref|YP_004208717.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F]
 gi|322690952|ref|YP_004220522.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326083|gb|AAN24672.1| widely conserved GTP-binding protein [Bifidobacterium longum
           NCC2705]
 gi|189427891|gb|ACD98039.1| GTPase [Bifidobacterium longum DJO10A]
 gi|227213543|gb|EEI81392.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|311773833|gb|ADQ03321.1| Era [Bifidobacterium longum subsp. longum BBMN68]
 gi|320455808|dbj|BAJ66430.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460319|dbj|BAJ70939.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F]
          Length = 354

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL  K +AI +  P TTR  +   L  +   + + DT G
Sbjct: 45  RSGF-VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTPG 103

Query: 277 I 277
           I
Sbjct: 104 I 104


>gi|322391938|ref|ZP_08065402.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus peroris
           ATCC 700780]
 gi|321145164|gb|EFX40561.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus peroris
           ATCC 700780]
          Length = 283

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 7/59 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+       + DLE     I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWFKTNKDLE-----ILDTPGI 176


>gi|227892551|ref|ZP_04010356.1| GTP-binding protein Era [Lactobacillus ultunensis DSM 16047]
 gi|227865672|gb|EEJ73093.1| GTP-binding protein Era [Lactobacillus ultunensis DSM 16047]
          Length = 301

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 43/86 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + VAI ++ P TTR+ ++         V   DT GI +  
Sbjct: 11  VALIGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSNKMQVVFVDTPGIFKPH 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
             ++    K +   + + DL+L + E
Sbjct: 71  SKLDDYMDKASLSSLNDVDLVLFMVE 96


>gi|118602244|ref|YP_903459.1| ribosome biogenesis GTP-binding protein YsxC [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|166225977|sp|A1AVN1|ENGB_RUTMC RecName: Full=Probable GTP-binding protein EngB
 gi|118567183|gb|ABL01988.1| cell division checkpoint GTPase YihA [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 199

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           GY+++  G SNAGKSS+ N L  +  +A V+  PG T+  +  +LD +  LV
Sbjct: 25  GYEVIFAGRSNAGKSSVINTLTLQNKLAKVSRTPGKTQHFVFFELDKDRRLV 76


>gi|326504304|dbj|BAJ90984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G++NAGKS+L N L   DV     +   +  TTR VL       G    ++DT G 
Sbjct: 330 VSLVGYTNAGKSTLLNRLTGADVLAEDKLFATLDPTTRRVLMKS----GTEFLLTDTVGF 385

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEI---SFPKNID 321
            +    +     + T  E+  + +I+ L +I+ +             KE+   S PK + 
Sbjct: 386 IQKLPTMLVAAFRATLEEISESSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVV 445

Query: 322 FIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +  I    +      E        IS+  G+GLEEL N I++ L +    +   +P +K 
Sbjct: 446 WNKIDNTDNPLRVKEEAAKQGIICISAMNGDGLEELCNAIQAKLKDSLVLIEAFVPYNKG 505

Query: 379 HLYH 382
            L +
Sbjct: 506 DLLN 509


>gi|260435681|ref|ZP_05789651.1| GTP-binding protein; HflX [Synechococcus sp. WH 8109]
 gi|260413555|gb|EEX06851.1| GTP-binding protein; HflX [Synechococcus sp. WH 8109]
          Length = 558

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 14/134 (10%)

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+D +  S +  +  +L  +  + SH S  +L +  R+  ++ ++G++NAGKSSL NAL 
Sbjct: 335 EKDRRAISRR--IERLLRDQRQLQSHRS--RLRDQRRDLPRVALVGYTNAGKSSLLNALC 390

Query: 241 KK---DVAIVTDIPGTTRDVLTIDLDLEGYLVK-----ISDTAG-IRETDDIVEKEGIKR 291
            K   D  +  +    T D  T  LDL     +     I+DT G IR+    +  E  + 
Sbjct: 391 GKRASDRVLAENKLFATLDPTTRKLDLPCPGARPERLLITDTVGFIRDLPAPL-VEAFRA 449

Query: 292 TFLEVENADLILLL 305
           T  E  +AD++LL+
Sbjct: 450 TLEEALDADVLLLV 463


>gi|257087775|ref|ZP_05582136.1| nitric-oxide synthase [Enterococcus faecalis D6]
 gi|256995805|gb|EEU83107.1| nitric-oxide synthase [Enterococcus faecalis D6]
          Length = 375

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 165 EKYREGRDVYVVGVTNVGKSTLINQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 224

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 225 I---DTPGI 230


>gi|238793072|ref|ZP_04636701.1| Predicted GTPase [Yersinia intermedia ATCC 29909]
 gi|238727672|gb|EEQ19197.1| Predicted GTPase [Yersinia intermedia ATCC 29909]
          Length = 251

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 31/59 (52%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           +G S  GKSSL N L     A V+ I G TR V T  L L  + + I D  GI ET ++
Sbjct: 1   MGKSGVGKSSLCNTLFNPPPAKVSAIKGCTRRVQTYQLALAPHALLIVDFPGIGETPEL 59


>gi|226323780|ref|ZP_03799298.1| hypothetical protein COPCOM_01555 [Coprococcus comes ATCC 27758]
 gi|225207964|gb|EEG90318.1| hypothetical protein COPCOM_01555 [Coprococcus comes ATCC 27758]
          Length = 298

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 8/90 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+L N L  + +AI ++ P TTR+    VLT D   EG +V + DT GI
Sbjct: 10  VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTD---EGQIVFV-DTPGI 65

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKE 307
            +  + +    +      +   D++L L E
Sbjct: 66  HKAKNKLGTYMVNVAERTLNEVDVVLWLVE 95


>gi|177656002|ref|ZP_02937129.1| GTPase family protein [Bacillus anthracis str. A0174]
 gi|254735876|ref|ZP_05193582.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Western North
           America USA6153]
 gi|172079901|gb|EDT65009.1| GTPase family protein [Bacillus anthracis str. A0174]
          Length = 296

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + +K      +++G    +IR     +I+G  N GKS+L N LAKK++A   D PG T  
Sbjct: 102 VLVKEKFDKMVAKGIRPRVIRA----LIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTA 157

Query: 257 VLTIDLDLEGYLVKISDTAGI 277
              I +   G  +++ DT GI
Sbjct: 158 QQWIKV---GKEMELLDTPGI 175


>gi|308811126|ref|XP_003082871.1| GTP-binding protein-like (ISS) [Ostreococcus tauri]
 gi|116054749|emb|CAL56826.1| GTP-binding protein-like (ISS) [Ostreococcus tauri]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++GY + I+G  NAGKS+L N L    ++IVT  P TTR  +   +  + Y + + DT G
Sbjct: 111 KSGY-VAIVGRPNAGKSTLMNDLVGTKLSIVTFKPQTTRHRILGIVSEDAYQMVLLDTPG 169

Query: 277 I 277
           +
Sbjct: 170 V 170


>gi|91794968|ref|YP_564619.1| GTPase EngB [Shewanella denitrificans OS217]
 gi|119369252|sp|Q12I30|ENGB_SHEDO RecName: Full=Probable GTP-binding protein EngB
 gi|91716970|gb|ABE56896.1| cell division checkpoint GTPase YihA [Shewanella denitrificans
           OS217]
          Length = 219

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 11/71 (15%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR--DVLTID 261
           +H++Q   G++   G +I   G SNAGKSS  NAL  +K +A  +  PG T+  +V  +D
Sbjct: 21  AHLNQYLPGDV---GVEIAFAGRSNAGKSSALNALTEQKSLARTSKTPGRTQLINVFALD 77

Query: 262 -----LDLEGY 267
                +DL GY
Sbjct: 78  DDRRLVDLPGY 88


>gi|17534827|ref|NP_495749.1| mammalian NucleoSTemin (stem cell marker) related family member
           (nst-1) [Caenorhabditis elegans]
 gi|62510571|sp|Q21086|GNL3_CAEEL RecName: Full=Guanine nucleotide-binding protein-like 3 homolog;
           AltName: Full=Nucleostemin-1
 gi|3878119|emb|CAA88860.1| C. elegans protein K01C8.9, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 556

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 38/62 (61%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L ++    V ++PG T+++  ++LD     +++ D+ 
Sbjct: 256 IKTSIRVGVVGFPNVGKSSVINSLKRRKACNVGNLPGITKEIQEVELDKN---IRLIDSP 312

Query: 276 GI 277
           G+
Sbjct: 313 GV 314


>gi|325569902|ref|ZP_08145896.1| GTP-binding protein [Enterococcus casseliflavus ATCC 12755]
 gi|325157025|gb|EGC69193.1| GTP-binding protein [Enterococcus casseliflavus ATCC 12755]
          Length = 377

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI-----VTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + K+   I      +  PGTT D + I LD   +L
Sbjct: 167 ETYREGRDVYVVGVTNVGKSTLINQIIKQTAGINELITTSRFPGTTLDKIEIPLDDGHFL 226

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 227 I---DTPGI 232


>gi|317404323|gb|EFV84750.1| hypothetical protein HMPREF0005_04216 [Achromobacter xylosoxidans
           C54]
          Length = 456

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV-AIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGIRE 279
           + ++GH+N GK+SL   L +      V D PGTTR V    L L+G  V +  DT G+ +
Sbjct: 8   VAVVGHTNTGKTSLLRTLTRDTTFGDVADQPGTTRHVEGARLRLDGRAVLEWFDTPGMED 67

Query: 280 TDDIVE 285
           +  ++E
Sbjct: 68  SIALLE 73


>gi|237751075|ref|ZP_04581555.1| GTP-binding protein Era [Helicobacter bilis ATCC 43879]
 gi|229373520|gb|EEO23911.1| GTP-binding protein Era [Helicobacter bilis ATCC 43879]
          Length = 300

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 7/104 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI-----DLDLEGYLVKISDTAG 276
           I ++G +NAGKS+L N L K  +A+V+     TR  + I     D D    L+ I DT G
Sbjct: 6   ISVIGRTNAGKSTLLNNLVKSPIALVSKKINATRKRMDIIVPFEDSDYNSQLIFI-DTPG 64

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-EISFPKN 319
           + E+  ++ +  ++     V ++DL + +   + KK EI   KN
Sbjct: 65  LHESKKLLNEYMLQEAKKAVGDSDLSVFVAVASPKKSEILHYKN 108


>gi|228472569|ref|ZP_04057329.1| GTP-binding protein Era [Capnocytophaga gingivalis ATCC 33624]
 gi|228275982|gb|EEK14738.1| GTP-binding protein Era [Capnocytophaga gingivalis ATCC 33624]
          Length = 293

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NAL  + ++I+T    TTR  +   +  + + V  SDT GI +    
Sbjct: 10  IIGNPNVGKSTLLNALVGERLSIITSKAQTTRHRIFGIVSGDDFQVVFSDTPGIIKPAYQ 69

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKK 312
           ++   +       E+AD+++ + EI  K+
Sbjct: 70  LQNSMMDFVKDAFEDADILIYMVEIGEKE 98


>gi|256832767|ref|YP_003161494.1| GTP-binding protein Era [Jonesia denitrificans DSM 20603]
 gi|256686298|gb|ACV09191.1| GTP-binding protein Era [Jonesia denitrificans DSM 20603]
          Length = 314

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+  ++ G  NAGKS+L NAL  + +AI  + P TTR  +   ++ E   + + DT G
Sbjct: 17  RSGFACLV-GRPNAGKSTLTNALVGQKIAITANKPQTTRHTIRGIVNREDAQLILVDTPG 75

Query: 277 I 277
           +
Sbjct: 76  L 76


>gi|212690522|ref|ZP_03298650.1| hypothetical protein BACDOR_00004 [Bacteroides dorei DSM 17855]
 gi|212666871|gb|EEB27443.1| hypothetical protein BACDOR_00004 [Bacteroides dorei DSM 17855]
          Length = 293

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   L+ +   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNLLVGERISIATFKSQTTRHRIMGILNTDDMQIVFSDTPGVVKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  +  +   + +AD++L + ++  K +    KN+DFI
Sbjct: 69  LQESMLNFSESALVDADILLYVTDVVEKTD----KNVDFI 104


>gi|239827759|ref|YP_002950383.1| GTP-binding protein Era [Geobacillus sp. WCH70]
 gi|239808052|gb|ACS25117.1| GTP-binding protein Era [Geobacillus sp. WCH70]
          Length = 302

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 38/185 (20%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID------LD 263
           + GYK   + I+G  N GKS+  N +  + +AI++D P TTR+    V T D      +D
Sbjct: 3   KEGYKSGFVSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIFID 62

Query: 264 LEG----------YLVKISDTAGIRETDDIV----EKEGIKRTFLEVENADLILLLKEIN 309
             G          +++K++  A +RE D I+     +EG  R      +A +I  LK +N
Sbjct: 63  TPGMHKPKHKLGDFMMKVALNA-LREVDLILFMINAEEGFGRG-----DAFIIEQLKAVN 116

Query: 310 SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNK 365
           +   +   K ID +       L   Y + Y       IS+  G  +E L+ +IK  L   
Sbjct: 117 TPVFLVINK-IDKVHPDDLLPLIDQYKDLYPFAEIIPISALQGNNIETLVEQIKKYLPEG 175

Query: 366 FKKLP 370
            +  P
Sbjct: 176 PQYYP 180


>gi|68076411|ref|XP_680125.1| translation initiation factor [Plasmodium berghei strain ANKA]
 gi|56501009|emb|CAH98440.1| translation initiation factor if-2, putative [Plasmodium berghei]
          Length = 1076

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 52/207 (25%)

Query: 217 RNGYKIVI--LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           RN Y  V+  +GH N GK++L + +   ++A   +    T+++  I  +LE Y     DT
Sbjct: 187 RNNYYTVVSVIGHINHGKTTLLDKVTNNNLAYY-EAGCITQNIKPIHFELEPYKFTFLDT 245

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL------KEINSKKEISFPK--NIDFIFIG 326
            G +    + +    +  FL    +D++++L       EI +++ I +    +I  IF  
Sbjct: 246 PGHK----VFQILRGRAAFL----SDILIILISLEVGAEIQTEEAIKYADKFSIPVIFAL 297

Query: 327 TKSDLYS-------------------------TYTEEYDH--LISSFTGEGLEELINKIK 359
            K+D+Y                           Y+ E D+   ISS TG  L  LIN+I 
Sbjct: 298 NKADIYKENELVVKAELKNQCNKMFDEGILKHNYSNEIDNSITISSLTGYNLPRLINRIY 357

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQT 386
            I  N       ++P H  ++++ +Q 
Sbjct: 358 FIKQN------INLPYHSANVFYNNQN 378


>gi|257899220|ref|ZP_05678873.1| GTP-binding protein [Enterococcus faecium Com15]
 gi|293570366|ref|ZP_06681423.1| GTP-binding proten HflX [Enterococcus faecium E980]
 gi|257837132|gb|EEV62206.1| GTP-binding protein [Enterococcus faecium Com15]
 gi|291609544|gb|EFF38809.1| GTP-binding proten HflX [Enterococcus faecium E980]
          Length = 409

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 19/198 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I ++G++NAGKS++ N L + D     D    T D LT      EG+ + ++DT G  
Sbjct: 194 FQIGLIGYTNAGKSTILNLLTQAD-TYSKDQLFATLDPLTKRWRFAEGFEITVTDTVGFI 252

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIG 326
           +       +    T  E +N DL+L + + +S   I               K +  + + 
Sbjct: 253 QDLPTQLIDAFHSTLEESQNMDLLLHVVDASSPDRILQEQTVLKLMDELNMKEMPILTVY 312

Query: 327 TKSDLYS----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLY 381
            K+D       T T   + LIS+ T EG   LI  IK  L         S+PS++ + L 
Sbjct: 313 NKADQIDPAMFTPTLFPNVLISAQTKEGKTALIEAIKRQLMELMTPYTLSVPSNEGQKLS 372

Query: 382 HLSQTVRYLEMASLNEKD 399
            L +    L+ A + E +
Sbjct: 373 ELRRQTMVLDEAYMEESN 390


>gi|167046798|ref|YP_001661468.1| YeeP [Acinetobacter venetianus]
 gi|83833707|gb|ABC47664.1| YeeP [Acinetobacter venetianus]
          Length = 360

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%)

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KSSL NAL  KDVA V+D+   TR+   I +  EG  +K+ D  G+ ET
Sbjct: 118 KSSLCNALFGKDVAAVSDVAACTREPKEIFIGSEGAGIKLVDVPGVGET 166


>gi|58264550|ref|XP_569431.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57225663|gb|AAW42124.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 669

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G+ N GKSSL N+L +     V  +PG TR V  + LD +G  VKI D  G+
Sbjct: 228 VGVVGYPNVGKSSLINSLKRSRACAVAAMPGKTRVVQEVALD-KG--VKILDCPGV 280


>gi|54295993|ref|YP_122362.1| hypothetical protein lpp0010 [Legionella pneumophila str. Paris]
 gi|53749778|emb|CAH11158.1| hypothetical protein lpp0010 [Legionella pneumophila str. Paris]
          Length = 414

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 23/162 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG-IRE 279
           + ++G++NAGKS+LFN L  +    V D    T D     L+L G    I +DT G IR+
Sbjct: 200 VSLVGYTNAGKSTLFNVLTGEHT-YVADQLFATLDPTMRKLELPGSSAAILADTVGFIRD 258

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFP----------KNIDFIFIGT 327
               +  E  + T  E + ADL+L + +I+  + +E  F            NI  I +  
Sbjct: 259 LPHHL-VEAFRATLEETQQADLLLHVIDISDPNWRETVFEVQKVLDELKVSNIPVIQVFN 317

Query: 328 KSDLYSTYTEEYDH-------LISSFTGEGLEELINKIKSIL 362
           K DL   +  + D+        +S+ TG GL+ L   I + L
Sbjct: 318 KIDLQEGWQPKIDYTEDSCKVWLSATTGAGLDLLKEAIATQL 359


>gi|87124180|ref|ZP_01080030.1| ferrous iron transport protein B [Synechococcus sp. RS9917]
 gi|86168749|gb|EAQ70006.1| ferrous iron transport protein B [Synechococcus sp. RS9917]
          Length = 198

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           + ++G  N GKS+L+N L   + A + + PG T ++L   +  D  G   ++ D  GI +
Sbjct: 1   MALIGMPNTGKSTLYNRLTGGN-AQIANWPGLTVELLRGAMPADRRGRAYELVDLPGIHD 59

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
                E E + + F+     DL+L++
Sbjct: 60  FSGSSEDEAVVQRFMRNTPPDLVLVV 85


>gi|332533754|ref|ZP_08409612.1| GTP-binding protein EngB [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036809|gb|EGI73271.1| GTP-binding protein EngB [Pseudoalteromonas haloplanktis ANT/505]
          Length = 222

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 9/59 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---------DLEGY 267
            G ++   G SNAGKSS  NAL  + +A  +  PG T+ + T DL         DL GY
Sbjct: 27  TGIEVAFAGRSNAGKSSALNALTDQKLARTSKTPGRTQLINTFDLADVDDMRLIDLPGY 85


>gi|312866577|ref|ZP_07726792.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           parasanguinis F0405]
 gi|311097876|gb|EFQ56105.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
           parasanguinis F0405]
          Length = 283

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A+V + PG T+      L    YL +I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQW--LKTNKYL-EILDTPGI 176


>gi|291383432|ref|XP_002708268.1| PREDICTED: RAS and EF-hand domain containing-like [Oryctolagus
           cuniculus]
          Length = 740

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 33/154 (21%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-------LDLEGYLV 269
           +  YKIV+ G +  GKSS    L K       +  G T   L +D       +D E  ++
Sbjct: 539 QKAYKIVLAGDAAVGKSSFLMRLCK------NEFRGNTSATLGVDFQMKTLFVDGERTVL 592

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-ISFPKNIDFI----- 323
           ++ DTAG +E    + K   +R       AD +LLL ++  +K  ++  + ID I     
Sbjct: 593 QLWDTAG-QERFRSIAKSYFRR-------ADGVLLLYDVTCEKSFLNVREWIDMIADAAH 644

Query: 324 ------FIGTKSDLYSTYTEEYDHLISSFTGEGL 351
                  +G K+DL  + + E    +S + GE L
Sbjct: 645 EMIPIMLVGNKADLRDSASAEGQQCVSGYFGEKL 678


>gi|240172991|ref|ZP_04751649.1| GTP-binding protein Era [Mycobacterium kansasii ATCC 12478]
          Length = 303

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    VAI +  P TTR  +   +  E + + + DT G
Sbjct: 6   RSGF-VCLVGRPNTGKSTLTNALVGAKVAITSMRPQTTRHTIRGIVHRENFQIILVDTPG 64

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ K   + ++ T+ EV+
Sbjct: 65  LHRPRTLLGKRLNDLVRATYAEVD 88


>gi|294941886|ref|XP_002783289.1| Nucleolar GTP-binding protein, putative [Perkinsus marinus ATCC
           50983]
 gi|239895704|gb|EER15085.1| Nucleolar GTP-binding protein, putative [Perkinsus marinus ATCC
           50983]
          Length = 443

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    I ++G+ N GKSS+ NAL +K V     +PG T+    + L    YL+   D  G
Sbjct: 320 RKHVSIGMIGYPNVGKSSVINALKRKKVCKAAPVPGETKVWQYVALTKRIYLI---DCPG 376

Query: 277 I-RETDDIVEKEG 288
           I   T D  ++EG
Sbjct: 377 IVPATSDDFKQEG 389


>gi|238785021|ref|ZP_04629018.1| Predicted GTPase [Yersinia bercovieri ATCC 43970]
 gi|238714062|gb|EEQ06077.1| Predicted GTPase [Yersinia bercovieri ATCC 43970]
          Length = 251

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 31/59 (52%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           +G S  GKSSL N L     A V+ I G TR V T  L L  + + I D  GI ET ++
Sbjct: 1   MGKSGVGKSSLCNTLFNPPPAKVSAIKGCTRRVQTYQLALAPHALLIVDFPGIGETPEL 59


>gi|52840266|ref|YP_094065.1| GTP binding protein HflX [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52627377|gb|AAU26118.1| GTP binding protein HflX [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 419

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 23/162 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG-IRE 279
           + ++G++NAGKS+LFN L  +    V D    T D     L+L G    I +DT G IR+
Sbjct: 205 VSLVGYTNAGKSTLFNVLTGEHT-YVADQLFATLDPTMRKLELPGSSAAILADTVGFIRD 263

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFP----------KNIDFIFIGT 327
               +  E  + T  E + ADL+L + +I+  + +E  F            NI  I +  
Sbjct: 264 LPHHL-VEAFRATLEETQQADLLLHVIDISDPNWRETVFEVQKVLDELKVNNIPVIQVFN 322

Query: 328 KSDLYSTYTEEYDH-------LISSFTGEGLEELINKIKSIL 362
           K DL   +  + D+        +S+ TG GL+ L   I + L
Sbjct: 323 KIDLQEGWQPKIDYTEDSCKVWLSATTGAGLDLLKEAIATQL 364


>gi|307608760|emb|CBW98143.1| hypothetical protein LPW_00091 [Legionella pneumophila 130b]
          Length = 414

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 23/162 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG-IRE 279
           + ++G++NAGKS+LFN L  +    V D    T D     L+L G    I +DT G IR+
Sbjct: 200 VSLVGYTNAGKSTLFNVLTGEHT-YVADQLFATLDPTMRKLELPGSSAAILADTVGFIRD 258

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFP----------KNIDFIFIGT 327
               +  E  + T  E + ADL+L + +I+  + +E  F            NI  I +  
Sbjct: 259 LPHHL-VEAFRATLEETQQADLLLHVIDISDPNWRETVFEVQKVLDDLKVNNIPVIQVFN 317

Query: 328 KSDLYSTYTEEYDH-------LISSFTGEGLEELINKIKSIL 362
           K DL   +  + D+        +S+ TG GL+ L   I + L
Sbjct: 318 KIDLQEGWQPKIDYTEDSCKVWLSATTGAGLDLLKEAIATQL 359


>gi|293400515|ref|ZP_06644660.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305541|gb|EFE46785.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 272

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 12/75 (16%)

Query: 210 GKLGEIIRNGYK-----IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDL 262
            K+  +IR G K      +++G  N GKS+  N ++KK +A+  D PG T+ +    I+ 
Sbjct: 97  AKIERMIRRGMKPRAMRAMVVGVPNVGKSTFINKISKKKIAVTGDRPGVTKSLQWSKINK 156

Query: 263 DLEGYLVKISDTAGI 277
           DLE     + DT G+
Sbjct: 157 DLE-----LLDTPGV 166


>gi|148358150|ref|YP_001249357.1| GTP binding protein HflX [Legionella pneumophila str. Corby]
 gi|296105508|ref|YP_003617208.1| GTPase [Legionella pneumophila 2300/99 Alcoy]
 gi|148279923|gb|ABQ54011.1| GTP binding protein HflX [Legionella pneumophila str. Corby]
 gi|295647409|gb|ADG23256.1| GTPase [Legionella pneumophila 2300/99 Alcoy]
          Length = 414

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 23/162 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG-IRE 279
           + ++G++NAGKS+LFN L  +    V D    T D     L+L G    I +DT G IR+
Sbjct: 200 VSLVGYTNAGKSTLFNVLTGEHT-YVADQLFATLDPTMRKLELPGSSAAILADTVGFIRD 258

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFP----------KNIDFIFIGT 327
               +  E  + T  E + ADL+L + +I+  + +E  F            NI  I +  
Sbjct: 259 LPHHL-VEAFRATLEETQQADLLLHVIDISDPNWRETVFEVQKVLDELKVSNIPVIQVFN 317

Query: 328 KSDLYSTYTEEYDH-------LISSFTGEGLEELINKIKSIL 362
           K DL   +  + D+        +S+ TG GL+ L   I + L
Sbjct: 318 KIDLQEGWQPKIDYTEDACKVWLSATTGAGLDLLKEAIATQL 359


>gi|47567864|ref|ZP_00238572.1| GTP-binding protein Era [Bacillus cereus G9241]
 gi|47555541|gb|EAL13884.1| GTP-binding protein Era [Bacillus cereus G9241]
          Length = 301

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 70/178 (39%), Gaps = 24/178 (13%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   D
Sbjct: 3   RKGYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP---- 317
           T GI +    +    +K     ++  D++L +              I   KE   P    
Sbjct: 63  TPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLV 122

Query: 318 -KNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLP 370
              ID +      +L   Y + +D      IS+  G  +E LI  IK  L    +  P
Sbjct: 123 INKIDQVHPEQLLELIDQYRKLHDFAEIVPISALDGNNVESLIGTIKKYLPEGPQYYP 180


>gi|300868233|ref|ZP_07112864.1| GTP-binding protein, HSR1-related [Oscillatoria sp. PCC 6506]
 gi|300333757|emb|CBN58048.1| GTP-binding protein, HSR1-related [Oscillatoria sp. PCC 6506]
          Length = 539

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI-----PGTTR 255
           N + +H S+ +     R    I I+G++NAGKS+L N L   +V     +     P T R
Sbjct: 347 NQLQAHRSRMRQQRQHREVPSIAIVGYTNAGKSTLLNVLTNAEVYTADQLFATLDPTTRR 406

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            V+   +  E   + ++DT G          +  + T  EV +AD +L
Sbjct: 407 LVIADAVTEESLSIVLTDTVGFIHELPPALIDAFRATLEEVTDADALL 454


>gi|291547868|emb|CBL20976.1| iron-only hydrogenase maturation protein HydF [Ruminococcus sp.
           SR1/5]
          Length = 433

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGI 277
           I   G  NAGKSS+ N +  +++A+V+D+ GTT D ++  ++L   G +V I DT GI
Sbjct: 14  IGFFGRRNAGKSSIVNKVTGQELAVVSDVKGTTTDPVSKAMELLPMGPVV-IIDTPGI 70


>gi|227550374|ref|ZP_03980423.1| HflX subfamily GTP-binding protein [Enterococcus faecium TX1330]
 gi|257888407|ref|ZP_05668060.1| GTP-binding protein [Enterococcus faecium 1,141,733]
 gi|257897219|ref|ZP_05676872.1| GTP-binding protein [Enterococcus faecium Com12]
 gi|293377991|ref|ZP_06624169.1| GTP-binding protein HflX [Enterococcus faecium PC4.1]
 gi|227180513|gb|EEI61485.1| HflX subfamily GTP-binding protein [Enterococcus faecium TX1330]
 gi|257824461|gb|EEV51393.1| GTP-binding protein [Enterococcus faecium 1,141,733]
 gi|257833784|gb|EEV60205.1| GTP-binding protein [Enterococcus faecium Com12]
 gi|292643356|gb|EFF61488.1| GTP-binding protein HflX [Enterococcus faecium PC4.1]
          Length = 409

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 19/198 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I ++G++NAGKS++ N L + D     D    T D LT      EG+ + ++DT G  
Sbjct: 194 FQIGLIGYTNAGKSTILNLLTQAD-TYSKDQLFATLDPLTKRWRFAEGFEITVTDTVGFI 252

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIG 326
           +       +    T  E +N DL+L + + +S   I               K +  + + 
Sbjct: 253 QDLPTQLIDAFHSTLEESQNMDLLLHVVDASSPDRILQEQTVLKLMDELNMKEMPILTVY 312

Query: 327 TKSDLYS----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLY 381
            K+D       T T   + LIS+ T EG   LI  IK  L         S+PS++ + L 
Sbjct: 313 NKADQIDPAMFTPTLFPNVLISAQTKEGKTALIEAIKRQLMELMTPYTLSVPSNEGQKLS 372

Query: 382 HLSQTVRYLEMASLNEKD 399
            L +    L+ A + E +
Sbjct: 373 ELRRQTMVLDEAYMEESN 390


>gi|205374257|ref|ZP_03227056.1| GTP-binding protein YqeH [Bacillus coahuilensis m4-4]
          Length = 164

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 12/110 (10%)

Query: 195 DILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVT 248
           D+  +  D  ++I +  +L E  R G  + I+G +N GKS+  N +      +K+V   +
Sbjct: 56  DVQLISADKGTNILKALELIETYRKGQDVYIVGCTNVGKSTFINRIIQEVSGEKNVITTS 115

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLE 295
             PGTT D++ I LD    L+   DT GI    +    V+K+ +K   L+
Sbjct: 116 HFPGTTLDMIEIPLDDGQALI---DTPGIINHHQMAHYVDKKSLKPLHLK 162


>gi|308807338|ref|XP_003080980.1| Predicted GTPase (ISS) [Ostreococcus tauri]
 gi|116059441|emb|CAL55148.1| Predicted GTPase (ISS) [Ostreococcus tauri]
          Length = 444

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-------DLEGYLVKISD 273
           +I   G SN GKSSL NAL    VA  +D+PG T+ +    L       DL GY    + 
Sbjct: 164 EIAFAGRSNVGKSSLINALTLSSVARSSDVPGKTQSLNFYSLGERIRLVDLPGYGFAFAK 223

Query: 274 TAGIRETDDIVE-----KEGIKRTFLEVE 297
            A +   +++++     +  +KR ++ V+
Sbjct: 224 QARVETWNELMDRYLTSRPNLKRVYIVVD 252


>gi|147919506|ref|YP_686754.1| GTP-binding protein [uncultured methanogenic archaeon RC-I]
 gi|110622150|emb|CAJ37428.1| conserved GTP-binding protein [uncultured methanogenic archaeon
           RC-I]
          Length = 425

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 27/193 (13%)

Query: 218 NGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
            G+ +V L G++NAGKS+L NAL  + V +  D   TT    T  ++     V ++DT G
Sbjct: 186 RGFDMVALAGYTNAGKSTLMNALVGETV-VAKDQLFTTLVPTTRMMEAGRRRVLLTDTVG 244

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------------ 318
             +       E  + T  E+  ADLI+L+ + +   E+   K                  
Sbjct: 245 FIKDLPHFMVEAFRSTLEEIYLADLIILVVDASEPPEVVLEKLATCHDTLWGKIGPIPVI 304

Query: 319 ----NIDFIFIGTKSDLYSTYTEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                ID I + T     +       H   +S+ TG+GLEEL   ++  L  K+     +
Sbjct: 305 TALNKIDKIDLPTLERTEAAIKNLAPHPVAVSARTGDGLEELRATVEFFLP-KWVSAELT 363

Query: 373 IPSHKRHLYHLSQ 385
           +P  +  L  LSQ
Sbjct: 364 LPHTEEGLSTLSQ 376


>gi|88812350|ref|ZP_01127600.1| GTP-binding protein Era [Nitrococcus mobilis Nb-231]
 gi|88790357|gb|EAR21474.1| GTP-binding protein Era [Nitrococcus mobilis Nb-231]
          Length = 310

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R G+  ++ G  N GKS+L N L  + V IV+  P TTR  +     L G  +   DT 
Sbjct: 17  LRCGFAALV-GRPNVGKSTLLNTLLGRKVTIVSRKPQTTRHRILGIHTLTGAQIVYVDTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEV-ENADLILLL 305
           G+   ++      + RT   V   AD+ + L
Sbjct: 76  GLHRQENTAMNRCLNRTATTVLAEADVAVFL 106


>gi|30263841|ref|NP_846218.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Ames]
 gi|47529266|ref|YP_020615.1| ribosomal biogenesis GTPase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186688|ref|YP_029940.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Sterne]
 gi|65321165|ref|ZP_00394124.1| COG1161: Predicted GTPases [Bacillus anthracis str. A2012]
 gi|170689661|ref|ZP_02880841.1| GTPase family protein [Bacillus anthracis str. A0465]
 gi|170709354|ref|ZP_02899768.1| GTPase family protein [Bacillus anthracis str. A0389]
 gi|227813254|ref|YP_002813263.1| GTPase family protein [Bacillus anthracis str. CDC 684]
 gi|229600440|ref|YP_002868075.1| GTPase family protein [Bacillus anthracis str. A0248]
 gi|254683455|ref|ZP_05147315.1| ribosomal biogenesis GTPase [Bacillus anthracis str. CNEVA-9066]
 gi|254751310|ref|ZP_05203347.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Vollum]
 gi|254759310|ref|ZP_05211335.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Australia 94]
 gi|30258485|gb|AAP27704.1| GTPase family protein [Bacillus anthracis str. Ames]
 gi|47504414|gb|AAT33090.1| GTPase family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180615|gb|AAT55991.1| GTPase family protein [Bacillus anthracis str. Sterne]
 gi|170125728|gb|EDS94641.1| GTPase family protein [Bacillus anthracis str. A0389]
 gi|170666385|gb|EDT17168.1| GTPase family protein [Bacillus anthracis str. A0465]
 gi|227002777|gb|ACP12520.1| GTPase family protein [Bacillus anthracis str. CDC 684]
 gi|229264848|gb|ACQ46485.1| GTPase family protein [Bacillus anthracis str. A0248]
          Length = 296

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + +K      +++G    +IR     +I+G  N GKS+L N LAKK++A   D PG T  
Sbjct: 102 VLVKEKFDKMVAKGIRPRVIRA----LIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTA 157

Query: 257 VLTIDLDLEGYLVKISDTAGI 277
              I +   G  +++ DT GI
Sbjct: 158 QQWIKV---GKEMELLDTPGI 175


>gi|313890885|ref|ZP_07824509.1| ribosome biogenesis GTPase YqeH [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313120783|gb|EFR43898.1| ribosome biogenesis GTPase YqeH [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 371

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 22/108 (20%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +R G  + ++G +N GKS+L NA+       K++   +  PGTT D + I L+   Y   
Sbjct: 160 LRRGRDVYVVGVTNVGKSTLINAIIQEISGNKNIITTSRFPGTTLDKIEIPLEDGTY--- 216

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
           I DT GI     +         +L  +N      LK I+ KKEI  PK
Sbjct: 217 IFDTPGIIHRHQMAH-------YLSAKN------LKYISPKKEIK-PK 250


>gi|255971788|ref|ZP_05422374.1| nitric-oxide synthase [Enterococcus faecalis T1]
 gi|255974786|ref|ZP_05425372.1| nitric-oxide synthase [Enterococcus faecalis T2]
 gi|256958094|ref|ZP_05562265.1| nitric-oxide synthase [Enterococcus faecalis DS5]
 gi|256960940|ref|ZP_05565111.1| nitric-oxide synthase [Enterococcus faecalis Merz96]
 gi|256963921|ref|ZP_05568092.1| nitric-oxide synthase [Enterococcus faecalis HIP11704]
 gi|257079982|ref|ZP_05574343.1| nitric-oxide synthase [Enterococcus faecalis JH1]
 gi|257081574|ref|ZP_05575935.1| nitric-oxide synthase [Enterococcus faecalis E1Sol]
 gi|257084223|ref|ZP_05578584.1| nitric-oxide synthase [Enterococcus faecalis Fly1]
 gi|257091097|ref|ZP_05585458.1| nitric-oxide synthase [Enterococcus faecalis CH188]
 gi|257417044|ref|ZP_05594038.1| nitric-oxide synthase [Enterococcus faecalis AR01/DG]
 gi|257420198|ref|ZP_05597192.1| nitric-oxide synthase [Enterococcus faecalis T11]
 gi|255962806|gb|EET95282.1| nitric-oxide synthase [Enterococcus faecalis T1]
 gi|255967658|gb|EET98280.1| nitric-oxide synthase [Enterococcus faecalis T2]
 gi|256948590|gb|EEU65222.1| nitric-oxide synthase [Enterococcus faecalis DS5]
 gi|256951436|gb|EEU68068.1| nitric-oxide synthase [Enterococcus faecalis Merz96]
 gi|256954417|gb|EEU71049.1| nitric-oxide synthase [Enterococcus faecalis HIP11704]
 gi|256988012|gb|EEU75314.1| nitric-oxide synthase [Enterococcus faecalis JH1]
 gi|256989604|gb|EEU76906.1| nitric-oxide synthase [Enterococcus faecalis E1Sol]
 gi|256992253|gb|EEU79555.1| nitric-oxide synthase [Enterococcus faecalis Fly1]
 gi|256999909|gb|EEU86429.1| nitric-oxide synthase [Enterococcus faecalis CH188]
 gi|257158872|gb|EEU88832.1| nitric-oxide synthase [Enterococcus faecalis ARO1/DG]
 gi|257162026|gb|EEU91986.1| nitric-oxide synthase [Enterococcus faecalis T11]
          Length = 375

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 165 EKYREGRDVYVVGVTNVGKSTLINQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 224

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 225 I---DTPGI 230


>gi|255634965|gb|ACU17841.1| unknown [Glycine max]
          Length = 391

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 15/90 (16%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID------ 261
           S+G L   +R G    I+G+ N GKSSL N L K+ +      PG TR++  +       
Sbjct: 200 SKGLLPRAVRAG----IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELRWVRFGKDLE 255

Query: 262 -LDLEGYL-VKISD-TAGIRET--DDIVEK 286
            LD  G L ++ISD +A I+    DDI E+
Sbjct: 256 LLDSPGILPMRISDQSAAIKLAICDDIGER 285


>gi|288941466|ref|YP_003443706.1| GTP-binding protein HSR1-like protein [Allochromatium vinosum DSM
           180]
 gi|288896838|gb|ADC62674.1| GTP-binding protein HSR1-related protein [Allochromatium vinosum
           DSM 180]
          Length = 517

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 10/93 (10%)

Query: 176 LDFSEEEDVQNFS--SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           L  ++ E V+  +  S+  L   + ++     H+ Q  +        + ++LG SNAGKS
Sbjct: 242 LPLNDAEPVERLTRDSRRDLERAVEIERAPREHLEQEPM--------RFLVLGRSNAGKS 293

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           SL NAL     A V  +P TTR +    L+ +G
Sbjct: 294 SLINALFGHPRAAVDILPDTTRALTPYRLEHDG 326


>gi|258577617|ref|XP_002542990.1| nucleolar GTP-binding protein 2 [Uncinocarpus reesii 1704]
 gi|237903256|gb|EEP77657.1| nucleolar GTP-binding protein 2 [Uncinocarpus reesii 1704]
          Length = 560

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+       
Sbjct: 321 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLIDCPGVVP 380

Query: 277 IRETDDIVEKEGIKRTFLEVEN 298
              TD   E++ + R  + VEN
Sbjct: 381 PSNTD--TEEDILLRGVVRVEN 400


>gi|221639215|ref|YP_002525477.1| GTP-binding protein, HSR1-related [Rhodobacter sphaeroides KD131]
 gi|221159996|gb|ACM00976.1| GTP-binding protein, HSR1-related [Rhodobacter sphaeroides KD131]
          Length = 447

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 29/165 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +   DV +  D+   T D     + L  G  V +SDT G    
Sbjct: 229 VALVGYTNAGKSTLFNRMTGADV-LAKDMLFATLDPTMRGVTLPSGRKVILSDTVGF--I 285

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEI----------------------NSKKEISF 316
            D+  +     + T  EV  ADLIL +++I                       +  ++  
Sbjct: 286 SDLPTQLVAAFRATLEEVLEADLILHVRDIAHPETAEQAADVAEILQSLGVKGATPQVEV 345

Query: 317 PKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIKS 360
              +D +   T   L +   + E    +S+ TGEGL +L+  + +
Sbjct: 346 WNKLDLVEGATHEQLLAQAAKSETIFALSALTGEGLPDLLEAVSA 390


>gi|206895213|ref|YP_002247449.1| ferrous iron transport protein B [Coprothermobacter proteolyticus
           DSM 5265]
 gi|206737830|gb|ACI16908.1| ferrous iron transport protein B [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 652

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV++G+ N GKS+LFN +    V  V + PG T DV      + G + ++ D  G    
Sbjct: 26  RIVLVGNPNCGKSTLFNLITGMSVH-VGNWPGVTVDVKMAQWKVNGEIWEVVDLPGSYSL 84

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
                 E +  +FL  +  D+IL
Sbjct: 85  LGKNADEQVTSSFLLSQEYDVIL 107


>gi|74210028|dbj|BAE21304.1| unnamed protein product [Mus musculus]
          Length = 555

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 33/154 (21%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-------LDLEGYLV 269
           +  YKIV+ G +  GKSS    L K       +  G T   L +D       +D E  ++
Sbjct: 354 QKAYKIVLAGDAAVGKSSFLMRLCK------NEFQGNTSATLGVDFQMKTLIVDGEQTVL 407

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFP 317
           ++ DTAG            I +++     AD +LLL ++  +K            E    
Sbjct: 408 QLWDTAGQERF------RSIAKSYF--RKADGVLLLYDVTCEKSFLNVREWVDMVEDGTH 459

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           + I  + +G K+DL      E    IS++ GE L
Sbjct: 460 RTIPIMLVGNKADLRDVDNAENQKCISAYLGEKL 493


>gi|62945396|ref|NP_001017427.1| ras and EF-hand domain-containing protein homolog [Mus musculus]
 gi|81871838|sp|Q5RI75|RASEF_MOUSE RecName: Full=Ras and EF-hand domain-containing protein homolog
 gi|116138352|gb|AAI25540.1| RAS and EF hand domain containing [Mus musculus]
 gi|187952707|gb|AAI37775.1| RAS and EF hand domain containing [Mus musculus]
          Length = 627

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 33/154 (21%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-------LDLEGYLV 269
           +  YKIV+ G +  GKSS    L K       +  G T   L +D       +D E  ++
Sbjct: 426 QKAYKIVLAGDAAVGKSSFLMRLCK------NEFQGNTSATLGVDFQMKTLIVDGEQTVL 479

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFP 317
           ++ DTAG            I +++     AD +LLL ++  +K            E    
Sbjct: 480 QLWDTAGQERF------RSIAKSYF--RKADGVLLLYDVTCEKSFLNVREWVDMVEDGTH 531

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           + I  + +G K+DL      E    IS++ GE L
Sbjct: 532 RTIPIMLVGNKADLRDVDNAENQKCISAYLGEKL 565


>gi|54292974|ref|YP_125389.1| hypothetical protein lpl0010 [Legionella pneumophila str. Lens]
 gi|53752806|emb|CAH14240.1| hypothetical protein lpl0010 [Legionella pneumophila str. Lens]
          Length = 414

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 23/162 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG-IRE 279
           + ++G++NAGKS+LFN L  +    V D    T D     L+L G    I +DT G IR+
Sbjct: 200 VSLVGYTNAGKSTLFNVLTGEHT-YVADQLFATLDPTMRKLELPGSSAAILADTVGFIRD 258

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFP----------KNIDFIFIGT 327
               +  E  + T  E + ADL+L + +I+  + +E  F            NI  I +  
Sbjct: 259 LPHHL-VEAFRATLEETQQADLLLHVIDISDPNWRETVFEVQKVLDELKVNNIPVIQVFN 317

Query: 328 KSDLYSTYTEEYDH-------LISSFTGEGLEELINKIKSIL 362
           K DL   +  + D+        +S+ TG GL+ L   I + L
Sbjct: 318 KIDLQEGWQPKIDYTEDSCKVWLSATTGAGLDLLKEAIATQL 359


>gi|145223297|ref|YP_001133975.1| GTP-binding protein Era [Mycobacterium gilvum PYR-GCK]
 gi|315443757|ref|YP_004076636.1| GTP-binding protein Era [Mycobacterium sp. Spyr1]
 gi|145215783|gb|ABP45187.1| GTP-binding protein Era [Mycobacterium gilvum PYR-GCK]
 gi|315262060|gb|ADT98801.1| GTP-binding protein Era [Mycobacterium sp. Spyr1]
          Length = 304

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    VAI ++ P TTR  +   +  + + + + DT G
Sbjct: 7   RSGF-VCFVGRPNTGKSTLTNALVGTKVAITSNRPQTTRHTIRGIVHRDDFQIVLVDTPG 65

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ +   E +K T+ EV+
Sbjct: 66  LHRPRTLLGQRLNELVKDTYSEVD 89


>gi|291543925|emb|CBL17034.1| Ras superfamily GTP-binding protein YlqF [Ruminococcus sp. 18P13]
          Length = 290

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 14/119 (11%)

Query: 160 QWIDKLTHIRSFIEA-DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN 218
           QW+ +L   RS   A  +D    + V+ F           L+  +   I+Q +   ++  
Sbjct: 74  QWLHRLR--RSGCAAVAMDCKSGKGVKQFHPA--------LRELLKEQIAQWRAKGLVNR 123

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              ++++G  N GKSS  N +A    A V D PG TR    + L   G  V++ DT G+
Sbjct: 124 PIHVMVVGIPNVGKSSFINKMAGGKRAKVEDRPGVTRTKQWVKL---GDGVEMLDTPGV 179


>gi|291407513|ref|XP_002720068.1| PREDICTED: guanine nucleotide binding protein-like 3
           (nucleolar)-like isoform 2 [Oryctolagus cuniculus]
          Length = 589

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 252 RLGEV-RTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVHLD---KFIR 307

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 308 LLDAPGI 314


>gi|256763435|ref|ZP_05504015.1| nitric-oxide synthase [Enterococcus faecalis T3]
 gi|256684686|gb|EEU24381.1| nitric-oxide synthase [Enterococcus faecalis T3]
          Length = 375

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 165 EKYREGRDVYVVGVTNVGKSTLINQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 224

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 225 I---DTPGI 230


>gi|257066944|ref|YP_003153200.1| ferrous iron transport protein B [Anaerococcus prevotii DSM 20548]
 gi|256798824|gb|ACV29479.1| ferrous iron transport protein B [Anaerococcus prevotii DSM 20548]
          Length = 716

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 12/89 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VKISDT 274
           YKI + G+ N+GK++LFNAL   +   V + PG T D        +G L     + I D 
Sbjct: 3   YKIALAGNPNSGKTTLFNALTGSNQR-VGNWPGVTVD------KKQGVLKGHKDIIIEDL 55

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            GI        +E + R +L  E  DLI+
Sbjct: 56  PGIYSLSPYTMEEVVSREYLVGERPDLII 84


>gi|188025698|ref|ZP_02959493.2| hypothetical protein PROSTU_01355 [Providencia stuartii ATCC 25827]
 gi|188022778|gb|EDU60818.1| hypothetical protein PROSTU_01355 [Providencia stuartii ATCC 25827]
          Length = 252

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +G + AGKSSL NAL +  ++ V+++ G TR V    + +  + +   D  G+ E+
Sbjct: 1   MGKTGAGKSSLINALFQSSLSHVSNVSGCTRQVQRFSMTMNNHTLTFVDLPGVGES 56


>gi|153951129|ref|YP_001398383.1| GTP-binding protein Era [Campylobacter jejuni subsp. doylei 269.97]
 gi|189037257|sp|A7H4F3|ERA_CAMJD RecName: Full=GTPase Era
 gi|152938575|gb|ABS43316.1| GTP-binding protein Era [Campylobacter jejuni subsp. doylei 269.97]
          Length = 291

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVIHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           G+ E+     +  ++     +E+ D+IL +  +
Sbjct: 60  GLHESGATFNQLLVQSAIKSMEDCDVILFVASV 92


>gi|15668746|ref|NP_247545.1| ferrous iron transport protein FeoB [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2498377|sp|Q57986|FEOB_METJA RecName: Full=Ferrous iron transport protein B homolog
 gi|1591272|gb|AAB98557.1| ferrous iron transport protein B (feoB) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 668

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS++FNAL  ++V I  + PG T +    + +  G   K+ D  G+  
Sbjct: 4   YEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E I R ++  E  DL++
Sbjct: 63  LTANSIDEIIARDYIINEKPDLVV 86


>gi|134110011|ref|XP_776216.1| hypothetical protein CNBC6070 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258888|gb|EAL21569.1| hypothetical protein CNBC6070 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 669

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G+ N GKSSL N+L +     V  +PG TR V  + LD +G  VKI D  G+
Sbjct: 228 VGVVGYPNVGKSSLINSLKRSRACAVAAMPGKTRVVQEVALD-KG--VKILDCPGV 280


>gi|294673629|ref|YP_003574245.1| ribosome biogenesis GTP-binding protein YsxC [Prevotella ruminicola
           23]
 gi|294471615|gb|ADE81004.1| ribosome biogenesis GTP-binding protein YsxC [Prevotella ruminicola
           23]
          Length = 200

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 13/161 (8%)

Query: 225 LGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           +G SN GKSSL N L  KK++A  +  PG T  +    ++ E YLV +      + +   
Sbjct: 29  IGRSNVGKSSLINMLTGKKNLAKTSATPGKTLLINHFIINNEWYLVDLPGYGFAKRSKKE 88

Query: 284 VEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI-FIGTKSDLYSTYTEEYD 340
           V+K  + I    L+ E    + LL +I  + +     +++F+ ++GT S  ++    + D
Sbjct: 89  VQKLEQMINGYILQREQLVNVFLLIDIRLEAQ---KIDLEFMEWMGTSSVPFAIIFTKAD 145

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRH 379
            L +S   + L    N  K +LS  +++LP  F   S K+ 
Sbjct: 146 KLSASKVLQNL----NAYKKVLSETWEELPPIFVTSSEKKQ 182


>gi|295698548|ref|YP_003603203.1| GTP-binding protein EngA [Candidatus Riesia pediculicola USDA]
 gi|291157395|gb|ADD79840.1| GTP-binding protein EngA [Candidatus Riesia pediculicola USDA]
          Length = 474

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 10/78 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL------VK--IS 272
           K+ I+G  N GKS+L N L  ++  IV+++P TTRD + + +    Y       V+  + 
Sbjct: 181 KVAIVGKPNVGKSTLINKLLMENRLIVSELPETTRDNIEVIVQNSRYQQVNEKEVRYCLV 240

Query: 273 DTAGIRETDDIVEKEGIK 290
           DT+GI  T+   ++E IK
Sbjct: 241 DTSGI--TEKFWKQENIK 256


>gi|239831497|ref|ZP_04679826.1| GTP-binding protein Era [Ochrobactrum intermedium LMG 3301]
 gi|239823764|gb|EEQ95332.1| GTP-binding protein Era [Ochrobactrum intermedium LMG 3301]
          Length = 311

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR  L   + +EG   + + DT 
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTR-ALVRGIFIEGPAQIVLVDTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI      +++  +   +   ++AD+IL+L
Sbjct: 76  GIFRPKRRLDRAMVTTAWGGAKDADIILVL 105


>gi|170077145|ref|YP_001733783.1| GTP-binding protein Era [Synechococcus sp. PCC 7002]
 gi|169884814|gb|ACA98527.1| GTP-binding protein Era [Synechococcus sp. PCC 7002]
          Length = 313

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L  + VAI + +  TTR+ L   L  +   +   DT G
Sbjct: 19  RSGF-VALIGRPNVGKSTLMNQLIGQKVAITSPVAQTTRNRLRGILSTDQAQIIFVDTPG 77

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +    + K  +K     V   DL++ +
Sbjct: 78  IHKPHHELGKILVKNARSTVGAVDLVVFI 106


>gi|21673128|ref|NP_661193.1| GTP-binding protein Era [Chlorobium tepidum TLS]
 gi|21646203|gb|AAM71535.1| GTP-binding protein, Era/ThdF family [Chlorobium tepidum TLS]
          Length = 305

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 26/168 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G  NAGKS+L N L    ++IVT  P TTR  +T     +   + I DT GI +  
Sbjct: 11  VTFVGAPNAGKSTLLNRLLDHKLSIVTPKPQTTRKKITGIYHDDRSQIIILDTPGIMDPK 70

Query: 282 DIVEKEGIKRTFLEVENADLILLL-------KEINSK------KEISFPKNIDFIFIGTK 328
             + +  ++ T   +  +D+I+ L       + I+ K      ++   P    F+    K
Sbjct: 71  QSLHESMLEITRRSLRESDVIVALIPFQKGDEPIDRKFASELIEQWVKPTGKPFVIALNK 130

Query: 329 SDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILS 363
           +DL              S Y       +S+ TG  + EL+  ++ +L 
Sbjct: 131 ADLVPEETAKEAQTEIISKYKPVATLALSALTGGNIPELVELLRPLLP 178


>gi|23465868|ref|NP_696471.1| GTP-binding protein [Bifidobacterium longum NCC2705]
 gi|23326569|gb|AAN25107.1| GTP-binding protein [Bifidobacterium longum NCC2705]
          Length = 501

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 28/165 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G++NAGKSSL N L       + A+   +    R   T D     Y+    DT G 
Sbjct: 283 VAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRAKTRDGRAYAYV----DTVGF 338

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL------------LLKEINSK-KEISFPKNIDFIF 324
                    E  K T  EV  AD+IL             +  +N    +I    +I  I 
Sbjct: 339 VRRLPTQLVEAFKSTLEEVAEADVILHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRIL 398

Query: 325 IGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSIL 362
           +  K+D     T E          ++S++TGEGL+EL   ++S+L
Sbjct: 399 VFNKADQADEATRERLAALQPDAFIVSAYTGEGLDELRTAVESLL 443


>gi|327183708|gb|AEA32155.1| GTPase Era [Lactobacillus amylovorus GRL 1118]
          Length = 301

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 44/86 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + VAI ++ P TTR+ ++     +   +   DT GI +  
Sbjct: 11  VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDDMQIVFVDTPGIFKPH 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
             ++    K +   + + DL+L + E
Sbjct: 71  SKLDDYMDKASLSSLNDVDLVLFMVE 96


>gi|315038512|ref|YP_004032080.1| GTP-binding protein Era [Lactobacillus amylovorus GRL 1112]
 gi|312276645|gb|ADQ59285.1| GTP-binding protein Era [Lactobacillus amylovorus GRL 1112]
          Length = 301

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 44/86 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + VAI ++ P TTR+ ++     +   +   DT GI +  
Sbjct: 11  VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDDMQIVFVDTPGIFKPH 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
             ++    K +   + + DL+L + E
Sbjct: 71  SKLDDYMDKASLSSLNDVDLVLFMVE 96


>gi|257869176|ref|ZP_05648829.1| GTP-binding protein YqeH [Enterococcus gallinarum EG2]
 gi|257803340|gb|EEV32162.1| GTP-binding protein YqeH [Enterococcus gallinarum EG2]
          Length = 370

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAI-----VTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+L N + K+   +      +  PGTT D + I LD   +L+  
Sbjct: 163 REGRDVYVVGVTNVGKSTLINQIIKQTAGVQELITTSRFPGTTLDKIEIPLDDGHFLI-- 220

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
            DT GI     +    G K   +   N ++     ++N+ + + F     F FI  +   
Sbjct: 221 -DTPGIIHRHQMAHYLGKKDLKIVAPNKEIKPKSYQLNAGQTLFFGGVARFDFIQGERSS 279

Query: 332 YSTYT 336
           +  Y 
Sbjct: 280 FIAYV 284


>gi|222097780|ref|YP_002531837.1| gtp-binding protein yqeh [Bacillus cereus Q1]
 gi|221241838|gb|ACM14548.1| GTP-binding protein [Bacillus cereus Q1]
          Length = 347

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 20/153 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R G  + ++G +N GKS+  N + K      ++V   +  PGTT D++ I LD E  
Sbjct: 134 EYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 193

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFIFI 325
           L    DT GI     +    G +   L     ++  ++ ++N ++ + F      D++  
Sbjct: 194 LY---DTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG 250

Query: 326 GTKS---------DLYSTYTEEYDHLISSFTGE 349
           G ++          ++ T  E+ D L  +  G+
Sbjct: 251 GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD 283


>gi|254429783|ref|ZP_05043490.1| GTPase, putative [Alcanivorax sp. DG881]
 gi|196195952|gb|EDX90911.1| GTPase, putative [Alcanivorax sp. DG881]
          Length = 489

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           +  ++GH N GKSS+   LA+ D   +   PGTTRD     + + E  L ++ DT G + 
Sbjct: 17  RFAVVGHPNKGKSSVVATLAQNDSIAIAMEPGTTRDSHRYPMKVDEVTLYELIDTPGFQR 76

Query: 280 TDDIV 284
              ++
Sbjct: 77  PRKVL 81


>gi|50897998|gb|AAT86009.1| putative GTPase YlqF [Vibrio harveyi]
          Length = 208

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS++ NALA + +A+  + P  TR    I+L   G  + +SDT GI
Sbjct: 13  RTMIMGIPNVGKSTIINALAGRTIAVTGNQPAVTRRQQRINLQ-NG--IVLSDTPGI 66


>gi|127511501|ref|YP_001092698.1| GTP-binding protein, HSR1-related [Shewanella loihica PV-4]
 gi|126636796|gb|ABO22439.1| GTP-binding protein, HSR1-related [Shewanella loihica PV-4]
          Length = 432

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 36/228 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFNAL   +V     +  T    L   LDL+   V ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNALTVSEVYAADQLFATLDPTLR-KLDLQDGSVILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLI-------------------LLLKEINSKK--EISFPK 318
             D+V     K T  E   ADL+                   L+LKEI +++  ++    
Sbjct: 259 PHDLV--AAFKATLQETREADLLLHVVDSADENMGDNFEQVQLVLKEIGAEEIPQLIVCN 316

Query: 319 NIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            ID +  +G K D Y          +S+    GL+ L   I  ++     +L   IP+  
Sbjct: 317 KIDLLEDVGPKID-YDGDGVPIRVWVSAQQSLGLDLLEKAINQLVGRAILELTLRIPATA 375

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419
            H  +L Q  R   +      D G  I++  L      RLA  S G++
Sbjct: 376 GH--YLGQFYRLDVIQQKEYDDLGNCILSVRLLEADWHRLAKQSQGEL 421


>gi|325963341|ref|YP_004241247.1| GTP-binding protein Era [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469428|gb|ADX73113.1| GTP-binding protein Era [Arthrobacter phenanthrenivorans Sphe3]
          Length = 319

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+  V++G  NAGKS+L NAL  K VAI +  P TTR  +   +  +   + + DT G
Sbjct: 17  RAGFS-VLVGRPNAGKSTLTNALVGKKVAITSAKPQTTRHTIRGIVHRQDAQLILVDTPG 75

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ K   E +  T  EV+
Sbjct: 76  LHRPRTLLGKRLNELVADTLAEVD 99


>gi|321253050|ref|XP_003192611.1| GTPase; Nog2p [Cryptococcus gattii WM276]
 gi|317459080|gb|ADV20824.1| GTPase, putative; Nog2p [Cryptococcus gattii WM276]
          Length = 669

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G+ N GKSSL N+L +     V  +PG TR V  + LD +G  VKI D  G+
Sbjct: 228 VGVVGYPNVGKSSLINSLKRSRACAVAAMPGKTRVVQEVTLD-KG--VKILDCPGV 280


>gi|313672666|ref|YP_004050777.1| gtp-binding protein hflx [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939422|gb|ADR18614.1| GTP-binding protein HflX [Calditerrivibrio nitroreducens DSM 19672]
          Length = 552

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 89/215 (41%), Gaps = 34/215 (15%)

Query: 190 KEVLNDILFLKN---DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA- 245
           + + + I FL N   DI S     ++    +N   + I+G++NAGKS+L N L K DV  
Sbjct: 340 RRIRDRIAFLTNKLKDIESVRQTQRVKRTRKNLPIVSIVGYTNAGKSTLLNNLTKSDVYA 399

Query: 246 --IVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLI 302
             ++     TT   L    D E  L   +DT G IR   + + K   K T  E+E +DL 
Sbjct: 400 DNLMFATLDTTSKRLRFPEDRECIL---TDTVGFIRNLPESL-KGAFKSTLEELEESDLF 455

Query: 303 LLLKEI---------------------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           + L +I                     N K +I     ID +     ++    Y E    
Sbjct: 456 IHLVDISNTQYKKQIDAVNQIFEELKLNDKPKIMVFNKIDLVDKQVITEAQKDYPEAI-- 513

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            IS+   +  EELI KI  IL    KKL   +  +
Sbjct: 514 FISALNKKTFEELIIKINHILFVGGKKLGIPVRDY 548


>gi|294893594|ref|XP_002774550.1| GTP-binding protein era, putative [Perkinsus marinus ATCC 50983]
 gi|239879943|gb|EER06366.1| GTP-binding protein era, putative [Perkinsus marinus ATCC 50983]
          Length = 422

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  NAGKSSL N +  + +A V+    TTR+ +   +    + + + D  G+   
Sbjct: 87  KVALIGAPNAGKSSLMNCMLNQSLAAVSPKVNTTREEIRGVVTDGDHQIVVIDAPGVIPA 146

Query: 281 DDIVEKEGIKR-TFLEVENADLILLLKEINSKKEISFPKNIDFI-FIGTKSDLYSTYTEE 338
           +       + R  +    + DL+LL+ +   + ++     +D I  I  K DL + Y E 
Sbjct: 147 NQTKSCRALARDAWTGYNDCDLVLLVVDTLRRPDMDL---VDLIRRIAPKPDLSTEYHER 203

Query: 339 YD 340
            +
Sbjct: 204 RN 205


>gi|258511948|ref|YP_003185382.1| GTP-binding protein Era [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478674|gb|ACV58993.1| GTP-binding protein Era [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 298

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NAL  + VAI+++ P TTR+ +      E   +   DT GI +  
Sbjct: 8   VALIGRPNVGKSTLLNALVGQKVAIMSNRPQTTRNRIRGVRTTETSQMIFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
             + +  +      +   D+I+L+ + +S
Sbjct: 68  HRLGEYMVDAALKTLNEVDVIVLVVDASS 96


>gi|300361843|ref|ZP_07058020.1| GTP-binding protein Era [Lactobacillus gasseri JV-V03]
 gi|300354462|gb|EFJ70333.1| GTP-binding protein Era [Lactobacillus gasseri JV-V03]
          Length = 303

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + VAI++  P TTR+ ++ I  D +  +V I DT G+ + 
Sbjct: 13  VALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFI-DTPGVHKP 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + ++    K ++  ++  D++L + E
Sbjct: 72  KNKLDDFMDKSSYSALDEVDVVLFMVE 98


>gi|182681243|ref|YP_001829403.1| ribosome biogenesis GTP-binding protein YsxC [Xylella fastidiosa
           M23]
 gi|182631353|gb|ACB92129.1| GTP-binding protein HSR1-related [Xylella fastidiosa M23]
          Length = 219

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +G ++   G SNAGKSS+ N L +++ +A V+  PG T+ ++   +  + YLV +
Sbjct: 40  DGSEVAFAGRSNAGKSSVLNTLTRQNALARVSKTPGRTQQLVYFTVTPQRYLVDL 94


>gi|115464049|ref|NP_001055624.1| Os05g0430400 [Oryza sativa Japonica Group]
 gi|55733919|gb|AAV59426.1| putative GTP-binding protein [Oryza sativa Japonica Group]
 gi|113579175|dbj|BAF17538.1| Os05g0430400 [Oryza sativa Japonica Group]
 gi|215693391|dbj|BAG88773.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222631679|gb|EEE63811.1| hypothetical protein OsJ_18635 [Oryza sativa Japonica Group]
          Length = 371

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 15/89 (16%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID------- 261
           +G L   +R G    I+G+ N GKSSL N L K+ +      PG TR++  +        
Sbjct: 206 KGLLPRAVRAG----IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELKWVRFGSDLEL 261

Query: 262 LDLEGYL-VKISD-TAGIRET--DDIVEK 286
           LD  G L ++ISD TA I+    DDI E+
Sbjct: 262 LDSPGILPMRISDQTAAIKLAICDDIGER 290


>gi|228923088|ref|ZP_04086380.1| hypothetical protein bthur0011_40680 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836586|gb|EEM81935.1| hypothetical protein bthur0011_40680 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 368

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 20/153 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R G  + ++G +N GKS+  N + K      ++V   +  PGTT D++ I LD E  
Sbjct: 155 EYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFIFI 325
           L    DT GI     +    G +   L     ++  ++ ++N ++ + F      D++  
Sbjct: 215 LY---DTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG 271

Query: 326 GTKS---------DLYSTYTEEYDHLISSFTGE 349
           G ++          ++ T  E+ D L  +  G+
Sbjct: 272 GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD 304


>gi|42783426|ref|NP_980673.1| GTP-binding protein Era [Bacillus cereus ATCC 10987]
 gi|49481311|ref|YP_038355.1| GTP-binding protein Era [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52141202|ref|YP_085626.1| GTP-binding protein Era [Bacillus cereus E33L]
 gi|118479469|ref|YP_896620.1| GTP-binding protein Era [Bacillus thuringiensis str. Al Hakam]
 gi|196034381|ref|ZP_03101790.1| GTP-binding protein Era [Bacillus cereus W]
 gi|196039186|ref|ZP_03106492.1| GTP-binding protein Era [Bacillus cereus NVH0597-99]
 gi|196046320|ref|ZP_03113546.1| GTP-binding protein Era [Bacillus cereus 03BB108]
 gi|206978417|ref|ZP_03239286.1| GTP-binding protein Era [Bacillus cereus H3081.97]
 gi|217961790|ref|YP_002340360.1| GTP-binding protein Era [Bacillus cereus AH187]
 gi|218905437|ref|YP_002453271.1| GTP-binding protein Era [Bacillus cereus AH820]
 gi|222097745|ref|YP_002531802.1| gtp-binding protein era [Bacillus cereus Q1]
 gi|225866281|ref|YP_002751659.1| GTP-binding protein Era [Bacillus cereus 03BB102]
 gi|254721891|ref|ZP_05183680.1| GTP-binding protein Era [Bacillus anthracis str. A1055]
 gi|301055792|ref|YP_003794003.1| GTP-binding protein [Bacillus anthracis CI]
 gi|42739355|gb|AAS43281.1| GTP-binding protein Era [Bacillus cereus ATCC 10987]
 gi|49332867|gb|AAT63513.1| GTP-binding protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51974671|gb|AAU16221.1| GTP-binding protein [Bacillus cereus E33L]
 gi|118418694|gb|ABK87113.1| GTP-binding protein [Bacillus thuringiensis str. Al Hakam]
 gi|195992923|gb|EDX56882.1| GTP-binding protein Era [Bacillus cereus W]
 gi|196022790|gb|EDX61471.1| GTP-binding protein Era [Bacillus cereus 03BB108]
 gi|196029813|gb|EDX68414.1| GTP-binding protein Era [Bacillus cereus NVH0597-99]
 gi|206743373|gb|EDZ54811.1| GTP-binding protein Era [Bacillus cereus H3081.97]
 gi|217063790|gb|ACJ78040.1| GTP-binding protein Era [Bacillus cereus AH187]
 gi|218535830|gb|ACK88228.1| GTP-binding protein Era [Bacillus cereus AH820]
 gi|221241803|gb|ACM14513.1| GTP-binding protein [Bacillus cereus Q1]
 gi|225786790|gb|ACO27007.1| GTP-binding protein Era [Bacillus cereus 03BB102]
 gi|300377961|gb|ADK06865.1| GTP-binding protein [Bacillus cereus biovar anthracis str. CI]
 gi|324328204|gb|ADY23464.1| GTPase Era [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 301

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 70/178 (39%), Gaps = 24/178 (13%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   D
Sbjct: 3   RKGYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP---- 317
           T GI +    +    +K     ++  D++L +              I   KE   P    
Sbjct: 63  TPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLV 122

Query: 318 -KNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLP 370
              ID +      +L   Y + +D      IS+  G  +E LI  IK  L    +  P
Sbjct: 123 INKIDQVHPEQLLELIDQYRKLHDFAEIVPISALDGNNVEALIGTIKKYLPEGPQYYP 180


>gi|326474147|gb|EGD98156.1| nucleolar GTP-binding protein [Trichophyton tonsurans CBS 112818]
 gi|326477567|gb|EGE01577.1| nucleolar GTP-binding protein 2 [Trichophyton equinum CBS 127.97]
          Length = 569

 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 323 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLI---DCPG 379

Query: 277 -IRETDDIVEKEGIKRTFLEVENAD 300
            +  +++  E++ + R  + VEN +
Sbjct: 380 VVPPSNNATEEDILLRGVVRVENVE 404


>gi|158320029|ref|YP_001512536.1| small GTP-binding protein [Alkaliphilus oremlandii OhILAs]
 gi|158140228|gb|ABW18540.1| small GTP-binding protein [Alkaliphilus oremlandii OhILAs]
          Length = 411

 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           N   IV  G  NAGKS+L N +  +D+++V+ I GTT D ++  ++L
Sbjct: 8   NRKHIVFYGKRNAGKSTLMNRIVGQDISVVSSIKGTTTDPVSKAVEL 54


>gi|332976790|gb|EGK13620.1| ribosome biogenesis GTP-binding protein YlqF [Psychrobacter sp.
           1501(2011)]
          Length = 323

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 18/121 (14%)

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
           +   WID L           D ++  DVQ          I   K+ + + +  G+     
Sbjct: 76  MTAAWIDHLEQQSQVKAIACDDNKANDVQKI--------IQLCKHLVPNKVGTGR----- 122

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
               K++I+G  N GKS+L N LA + +A   D P  T+    I +D +   + + DT G
Sbjct: 123 --QIKVLIMGIPNVGKSTLINTLAGRSIAKTGDEPAVTKSQQLIKIDND---IMLYDTPG 177

Query: 277 I 277
           +
Sbjct: 178 M 178


>gi|322387377|ref|ZP_08060987.1| GTP-binding protein HflX [Streptococcus infantis ATCC 700779]
 gi|321141906|gb|EFX37401.1| GTP-binding protein HflX [Streptococcus infantis ATCC 700779]
          Length = 412

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNTLTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPRLTLY 317

Query: 327 TKSDLYSTYTEEYD--HLISSFTGEGLEE----LINKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL   +T       LIS+ + +  E+    L++KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVENFTPTQTPYALISAKSKDSREQLHALLLDKIKVIFETFTLRVPFS-KSYKIH 375


>gi|317483526|ref|ZP_07942510.1| GTP-binding protein HflX [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689523|ref|YP_004209257.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F]
 gi|322691480|ref|YP_004221050.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|316915016|gb|EFV36454.1| GTP-binding protein HflX [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456336|dbj|BAJ66958.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460859|dbj|BAJ71479.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F]
          Length = 501

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 28/165 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G++NAGKSSL N L       + A+   +    R   T D     Y+    DT G 
Sbjct: 283 VAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRAKTRDGRAYAYV----DTVGF 338

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL------------LLKEINSK-KEISFPKNIDFIF 324
                    E  K T  EV  AD+IL             +  +N    +I    +I  I 
Sbjct: 339 VRRLPTQLVEAFKSTLEEVAEADVILHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRIL 398

Query: 325 IGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSIL 362
           +  K+D     T E          ++S++TGEGL+EL   ++S+L
Sbjct: 399 VFNKADQADEATRERLAALQPDAFIVSAYTGEGLDELRTAVESLL 443


>gi|312963667|ref|ZP_07778148.1| GTP-binding protein, HSR1-like protein [Pseudomonas fluorescens
           WH6]
 gi|311282176|gb|EFQ60776.1| GTP-binding protein, HSR1-like protein [Pseudomonas fluorescens
           WH6]
          Length = 455

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGI 277
           K+ ++GH+N GK+SL   L  +DV    V+  P TTR V    L +EG  L+++ DT G+
Sbjct: 6   KLAVVGHTNVGKTSLLRTLT-RDVGFGEVSHRPSTTRHVEGARLSVEGEALLELYDTPGL 64


>gi|291516984|emb|CBK70600.1| GTP-binding protein Era [Bifidobacterium longum subsp. longum F8]
          Length = 354

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL  K +AI +  P TTR  +   L  +   + + DT G
Sbjct: 45  RSGF-VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAVRGILTADHAQLVLVDTPG 103

Query: 277 I 277
           I
Sbjct: 104 I 104


>gi|271501620|ref|YP_003334646.1| GTP-binding protein Era [Dickeya dadantii Ech586]
 gi|270345175|gb|ACZ77940.1| GTP-binding protein Era [Dickeya dadantii Ech586]
          Length = 301

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 37/193 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  + + +  EG Y     DT G+   
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRI-MGIHTEGPYQAIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I EK  I R             L    +   I   + I F+  GT       +T++ +
Sbjct: 68  --IEEKRAINR-------------LMNRAASSSIGDVELIIFVVEGTH------WTDDDE 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++    +    L  INK+ ++ ++K K LP        H+  LS+ + +L++  ++ E
Sbjct: 107 MVVNKLRDQKTPVLLAINKVDNV-TDKTKLLP--------HIQMLSEKMNFLDVVPISAE 157

Query: 398 KDCGLDIIAENLR 410
           K   +D IA  +R
Sbjct: 158 KGTNVDTIAAIVR 170


>gi|258516724|ref|YP_003192946.1| GTP-binding proten HflX [Desulfotomaculum acetoxidans DSM 771]
 gi|257780429|gb|ACV64323.1| GTP-binding proten HflX [Desulfotomaculum acetoxidans DSM 771]
          Length = 414

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 38/201 (18%)

Query: 215 IIRNGYKIV----ILGHSNAGKSSLFNALAKKDVAI----VTDIPGTTRDVLTIDLDLEG 266
           ++R G K V    ++G++NAGKS+L N L   DV +       +  TTR V+  + D   
Sbjct: 186 LLRKGRKQVPVVSLVGYTNAGKSTLLNKLTGSDVLVEDKLFATLDPTTRQVILPNNDE-- 243

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------- 318
             + ++DT G  +          + T  EV  ADL  LL  ++S     F +        
Sbjct: 244 --ILVTDTVGFIQNLPHHLVAAFRATLEEVIEADL--LLHVVDSTHPNCFEQYKAVQSVL 299

Query: 319 ------NIDFIFIGTKSD--------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                 N   I +  K+D        L+          IS+ TGEGL  L+  I   L+ 
Sbjct: 300 SSLEVENKPSILVLNKADGLPKPDLNLWINIAGTPVTAISALTGEGLPGLLETIAKNLAY 359

Query: 365 KFKKLPFSIPSHKRHLYHLSQ 385
           +  +  F IP  K +L  LSQ
Sbjct: 360 RRVRTTFLIPYAKGYL--LSQ 378


>gi|170755310|ref|YP_001781985.1| ribosomal biogenesis GTPase [Clostridium botulinum B1 str. Okra]
 gi|169120522|gb|ACA44358.1| GTP-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 292

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++++G  N GKSS  N +AK  +A V D PG TR    I   ++   +++ DT G+
Sbjct: 122 RVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTRSKQWIKTKID---IELMDTPGV 175


>gi|159026057|emb|CAO86298.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 522

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 12/209 (5%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDT 274
           R   KI++ G  +AGK+SL NAL  + V  V    GTT    T  L ++G    ++I+DT
Sbjct: 131 RKEVKIIVFGTGSAGKTSLINALIGQMVGNVEATMGTTEKGETYSLKMKGVNREIQITDT 190

Query: 275 AGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLY- 332
            GI E      ++E + R       ADL+L + + N  ++  +   +  I IG +S L  
Sbjct: 191 PGILEIGAAGGQREQLARQL--ATEADLLLFVID-NDIRQSEYGPLLGLIDIGKRSLLVF 247

Query: 333 ---STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                Y++E   +I     E L+ +I     I++      P  +   +            
Sbjct: 248 NKIDLYSDEDREMILKQLRERLKGVILS-ADIIAVTANPQPVQLTGGQIITPEPDILALI 306

Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGK 418
             +AS+   + G D++A+N+ L S  LG+
Sbjct: 307 KRLASVLRAE-GEDLVADNILLQSQRLGE 334


>gi|102139740|gb|ABF69947.1| GTPase family protein [Musa acuminata]
          Length = 305

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 10/121 (8%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E +  GY + +LG  N GKS+L N +  + ++IVT+ P TTR  +        Y + + D
Sbjct: 3   EFVTAGY-VAVLGRPNVGKSTLSNQMIGQKLSIVTEKPQTTRHRILGICSGPEYQMILYD 61

Query: 274 TAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---IGTKS 329
           T G+ E    +++   +K       NAD +L++ +         P  ID +    IGT  
Sbjct: 62  TPGVIEKKMHMLDSMMMKNVRSAAINADCVLVVVD-----ACKVPHKIDDVLEEGIGTLR 116

Query: 330 D 330
           D
Sbjct: 117 D 117


>gi|146294988|ref|YP_001185412.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella
           putrefaciens CN-32]
 gi|166225982|sp|A4YCD0|ENGB_SHEPC RecName: Full=Probable GTP-binding protein EngB
 gi|145566678|gb|ABP77613.1| cell division checkpoint GTPase YihA [Shewanella putrefaciens
           CN-32]
 gi|319424461|gb|ADV52535.1| cell division control GTP-binding protein, EngB [Shewanella
           putrefaciens 200]
          Length = 219

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLD 263
           +H+ Q   G++   G +I   G SNAGKSS  NAL  +K +A  +  PG T+ +   +LD
Sbjct: 21  AHLDQYLPGDV---GVEIAFAGRSNAGKSSALNALTEQKSLARTSKTPGRTQLINVFELD 77

Query: 264 LEGYLVKI 271
            +  LV +
Sbjct: 78  SQRRLVDL 85


>gi|325968434|ref|YP_004244626.1| GTP-binding protein HSR1-related protein [Vulcanisaeta moutnovskia
           768-28]
 gi|323707637|gb|ADY01124.1| GTP-binding protein HSR1-related protein [Vulcanisaeta moutnovskia
           768-28]
          Length = 387

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 5/91 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ + G+++AGK++LFN L K++   V   P  T D  +  ++  G    ++DT G    
Sbjct: 208 QVALTGYTSAGKTTLFNRLTKEN-KYVDGKPFATLDTYSRLVNFNGVNAILTDTIGF--I 264

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEIN 309
           DDI  +  E    T  EV NADLIL + +++
Sbjct: 265 DDIPPLLIESFYATIAEVLNADLILFMLDVS 295


>gi|321398630|emb|CBZ08958.1| putative ras-like small GTPases [Leishmania infantum JPCM5]
          Length = 567

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 9/85 (10%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           G+ GE  R    + ++G+ N GKSS+ NAL +K V  V ++PG T     ++L  +   +
Sbjct: 295 GETGE--RKAIVVGVIGYPNVGKSSIINALKRKHVVGVGNMPGFTTGNTEVELRSD---I 349

Query: 270 KISDTAGI----RETDDIVEKEGIK 290
           ++ D  G+     ++ D+V +  I+
Sbjct: 350 RVMDCPGVVSPGEDSGDVVLRNAIR 374


>gi|313244528|emb|CBY15299.1| unnamed protein product [Oikopleura dioica]
          Length = 542

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++ G    ++G  N GKSS+ N LA+  V  V+   G+T+D   + +D     VK+ D+ 
Sbjct: 244 MKTGVTAAVVGFPNVGKSSIINTLARSRVCNVSATAGSTKDTQEVHID---KAVKLLDSP 300

Query: 276 GI 277
           G+
Sbjct: 301 GV 302


>gi|313159636|gb|EFR58994.1| ribosome biogenesis GTP-binding protein YsxC [Alistipes sp. HGB5]
          Length = 197

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 16/186 (8%)

Query: 201 NDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVL 258
           N      S  ++ ++ ++  K I  +G SN GKSSL N L  ++ +A V+  PG TR + 
Sbjct: 4   NKAEFKCSSERISQVPKDALKDIAFIGRSNVGKSSLINMLTGRQGLAKVSGTPGKTRLIN 63

Query: 259 TIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
              +D   YLV +      R  +T      + I    L+ E    + +L ++  +     
Sbjct: 64  HFLIDNAWYLVDLPGYGYARTSKTKRSEFSKIITDYVLKCEKMHFLFVLADLRLE----- 118

Query: 317 PKNIDFIFI---GTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           P+ ID  FI   G     ++    + D L    +    E+ + + ++ L+ ++++LP   
Sbjct: 119 PQKIDLQFIEMLGMNGIPFAVIFTKADKL----SKTQREKSVERYRAALAEQWEELPRMF 174

Query: 374 PSHKRH 379
            S  +H
Sbjct: 175 VSSSQH 180


>gi|256616683|ref|ZP_05473529.1| nitric-oxide synthase [Enterococcus faecalis ATCC 4200]
 gi|256596210|gb|EEU15386.1| nitric-oxide synthase [Enterococcus faecalis ATCC 4200]
          Length = 375

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 165 EKYREGRDVYVVGVTNVGKSTLINQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 224

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 225 I---DTPGI 230


>gi|186681007|ref|YP_001864203.1| GTP-binding protein Era [Nostoc punctiforme PCC 73102]
 gi|186463459|gb|ACC79260.1| GTP-binding protein Era [Nostoc punctiforme PCC 73102]
          Length = 318

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ I I+G  N GKS+L N L  + +AI + I  TTR+ L   L      +   DT G
Sbjct: 25  KSGF-IGIVGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGILTTPEAQLIFVDTPG 83

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +    + +  ++   + +E+ D++L +
Sbjct: 84  IHKPHHQLGEVLVQNAKIAIESVDVVLFV 112


>gi|30264407|ref|NP_846784.1| GTP-binding protein YqeH [Bacillus anthracis str. Ames]
 gi|42783462|ref|NP_980709.1| GTP-binding protein YqeH [Bacillus cereus ATCC 10987]
 gi|47569331|ref|ZP_00240015.1| GTPase of unknown function [Bacillus cereus G9241]
 gi|47778309|ref|YP_021207.2| GTP-binding protein YqeH [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187229|ref|YP_030481.1| GTP-binding protein YqeH [Bacillus anthracis str. Sterne]
 gi|49481394|ref|YP_038389.1| GTP-binding protein YqeH [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52141172|ref|YP_085660.1| GTP-binding protein YqeH [Bacillus cereus E33L]
 gi|65321707|ref|ZP_00394666.1| COG1161: Predicted GTPases [Bacillus anthracis str. A2012]
 gi|118479501|ref|YP_896652.1| GTP-binding protein YqeH [Bacillus thuringiensis str. Al Hakam]
 gi|165873260|ref|ZP_02217870.1| GTPase family protein [Bacillus anthracis str. A0488]
 gi|167634670|ref|ZP_02392990.1| GTPase family protein [Bacillus anthracis str. A0442]
 gi|167638624|ref|ZP_02396900.1| GTPase family protein [Bacillus anthracis str. A0193]
 gi|170687451|ref|ZP_02878668.1| GTPase family protein [Bacillus anthracis str. A0465]
 gi|170707440|ref|ZP_02897894.1| GTPase family protein [Bacillus anthracis str. A0389]
 gi|177653312|ref|ZP_02935564.1| GTPase family protein [Bacillus anthracis str. A0174]
 gi|190567041|ref|ZP_03019957.1| GTPase family protein [Bacillus anthracis Tsiankovskii-I]
 gi|196034517|ref|ZP_03101926.1| GTPase family protein [Bacillus cereus W]
 gi|196039178|ref|ZP_03106484.1| GTPase family protein [Bacillus cereus NVH0597-99]
 gi|196044801|ref|ZP_03112035.1| GTPase family protein [Bacillus cereus 03BB108]
 gi|206976038|ref|ZP_03236948.1| GTPase family protein [Bacillus cereus H3081.97]
 gi|217961825|ref|YP_002340395.1| GTP-binding protein YqeH [Bacillus cereus AH187]
 gi|218905472|ref|YP_002453306.1| GTPase family protein [Bacillus cereus AH820]
 gi|225866316|ref|YP_002751694.1| GTPase family protein [Bacillus cereus 03BB102]
 gi|227817112|ref|YP_002817121.1| GTPase family protein [Bacillus anthracis str. CDC 684]
 gi|228916967|ref|ZP_04080528.1| hypothetical protein bthur0012_41800 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929380|ref|ZP_04092403.1| hypothetical protein bthur0010_40660 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935656|ref|ZP_04098470.1| hypothetical protein bthur0009_41020 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228948049|ref|ZP_04110334.1| hypothetical protein bthur0007_41760 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228987588|ref|ZP_04147704.1| hypothetical protein bthur0001_42580 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229093405|ref|ZP_04224510.1| hypothetical protein bcere0021_41310 [Bacillus cereus Rock3-42]
 gi|229123874|ref|ZP_04253067.1| hypothetical protein bcere0016_41600 [Bacillus cereus 95/8201]
 gi|229141073|ref|ZP_04269615.1| hypothetical protein bcere0013_41670 [Bacillus cereus BDRD-ST26]
 gi|229157950|ref|ZP_04286022.1| hypothetical protein bcere0010_41300 [Bacillus cereus ATCC 4342]
 gi|229186575|ref|ZP_04313736.1| hypothetical protein bcere0004_41180 [Bacillus cereus BGSC 6E1]
 gi|229198463|ref|ZP_04325167.1| hypothetical protein bcere0001_39910 [Bacillus cereus m1293]
 gi|229601475|ref|YP_002868625.1| GTPase family protein [Bacillus anthracis str. A0248]
 gi|254684092|ref|ZP_05147952.1| GTP-binding protein YqeH [Bacillus anthracis str. CNEVA-9066]
 gi|254721926|ref|ZP_05183715.1| GTP-binding protein YqeH [Bacillus anthracis str. A1055]
 gi|254741477|ref|ZP_05199164.1| GTP-binding protein YqeH [Bacillus anthracis str. Kruger B]
 gi|254750916|ref|ZP_05202955.1| GTP-binding protein YqeH [Bacillus anthracis str. Vollum]
 gi|254757756|ref|ZP_05209783.1| GTP-binding protein YqeH [Bacillus anthracis str. Australia 94]
 gi|300118672|ref|ZP_07056400.1| GTP-binding protein YqeH [Bacillus cereus SJ1]
 gi|301055827|ref|YP_003794038.1| GTPase family protein [Bacillus anthracis CI]
 gi|30259065|gb|AAP28270.1| ribosome biogenesis protein GTPase YqeH [Bacillus anthracis str.
           Ames]
 gi|42739391|gb|AAS43317.1| GTPase family protein [Bacillus cereus ATCC 10987]
 gi|47552014|gb|AAT33682.2| GTPase family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|47554002|gb|EAL12369.1| GTPase of unknown function [Bacillus cereus G9241]
 gi|49181156|gb|AAT56532.1| GTPase family protein [Bacillus anthracis str. Sterne]
 gi|49332950|gb|AAT63596.1| GTP-binding protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51974641|gb|AAU16191.1| GTP-binding protein [Bacillus cereus E33L]
 gi|118418726|gb|ABK87145.1| GTP-binding protein [Bacillus thuringiensis str. Al Hakam]
 gi|164711019|gb|EDR16586.1| GTPase family protein [Bacillus anthracis str. A0488]
 gi|167513472|gb|EDR88842.1| GTPase family protein [Bacillus anthracis str. A0193]
 gi|167530122|gb|EDR92857.1| GTPase family protein [Bacillus anthracis str. A0442]
 gi|170127684|gb|EDS96557.1| GTPase family protein [Bacillus anthracis str. A0389]
 gi|170668646|gb|EDT19392.1| GTPase family protein [Bacillus anthracis str. A0465]
 gi|172081594|gb|EDT66666.1| GTPase family protein [Bacillus anthracis str. A0174]
 gi|190562032|gb|EDV16001.1| GTPase family protein [Bacillus anthracis Tsiankovskii-I]
 gi|195993059|gb|EDX57018.1| GTPase family protein [Bacillus cereus W]
 gi|196024289|gb|EDX62962.1| GTPase family protein [Bacillus cereus 03BB108]
 gi|196029805|gb|EDX68406.1| GTPase family protein [Bacillus cereus NVH0597-99]
 gi|206745790|gb|EDZ57187.1| GTPase family protein [Bacillus cereus H3081.97]
 gi|217066660|gb|ACJ80910.1| GTPase family protein [Bacillus cereus AH187]
 gi|218536686|gb|ACK89084.1| GTPase family protein [Bacillus cereus AH820]
 gi|225786457|gb|ACO26674.1| GTPase family protein [Bacillus cereus 03BB102]
 gi|227004029|gb|ACP13772.1| GTPase family protein [Bacillus anthracis str. CDC 684]
 gi|228584966|gb|EEK43080.1| hypothetical protein bcere0001_39910 [Bacillus cereus m1293]
 gi|228596834|gb|EEK54493.1| hypothetical protein bcere0004_41180 [Bacillus cereus BGSC 6E1]
 gi|228625510|gb|EEK82265.1| hypothetical protein bcere0010_41300 [Bacillus cereus ATCC 4342]
 gi|228642351|gb|EEK98640.1| hypothetical protein bcere0013_41670 [Bacillus cereus BDRD-ST26]
 gi|228659588|gb|EEL15235.1| hypothetical protein bcere0016_41600 [Bacillus cereus 95/8201]
 gi|228689999|gb|EEL43802.1| hypothetical protein bcere0021_41310 [Bacillus cereus Rock3-42]
 gi|228772129|gb|EEM20579.1| hypothetical protein bthur0001_42580 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228811635|gb|EEM57971.1| hypothetical protein bthur0007_41760 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228824016|gb|EEM69834.1| hypothetical protein bthur0009_41020 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830286|gb|EEM75900.1| hypothetical protein bthur0010_40660 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842688|gb|EEM87775.1| hypothetical protein bthur0012_41800 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229265883|gb|ACQ47520.1| GTPase family protein [Bacillus anthracis str. A0248]
 gi|298723921|gb|EFI64635.1| GTP-binding protein YqeH [Bacillus cereus SJ1]
 gi|300377996|gb|ADK06900.1| GTPase family protein [Bacillus cereus biovar anthracis str. CI]
 gi|324328239|gb|ADY23499.1| GTPase YqeH [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 368

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 20/153 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R G  + ++G +N GKS+  N + K      ++V   +  PGTT D++ I LD E  
Sbjct: 155 EYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFIFI 325
           L    DT GI     +    G +   L     ++  ++ ++N ++ + F      D++  
Sbjct: 215 LY---DTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG 271

Query: 326 GTKS---------DLYSTYTEEYDHLISSFTGE 349
           G ++          ++ T  E+ D L  +  G+
Sbjct: 272 GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD 304


>gi|326510903|dbj|BAJ91799.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G++NAGKS+L N L   DV     +   +  TTR VL       G    ++DT G 
Sbjct: 330 VSLVGYTNAGKSTLLNRLTGADVLAEDKLFATLDPTTRRVLM----KSGTEFLLTDTVGF 385

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEI---SFPKNID 321
            +    +     + T  E+  + +I+ L +I+ +             KE+   S PK + 
Sbjct: 386 IQKLPTMLVAAFRATLEEISESSIIVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVV 445

Query: 322 FIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +  I    +      E        IS+  G+GLEEL N I++ L +    +   +P +K 
Sbjct: 446 WNKIDNTDNPLRVKEEAAKQGIICISAMNGDGLEELCNAIQAKLKDSLVLIGAFVPYNKG 505

Query: 379 HLYH 382
            L +
Sbjct: 506 DLLN 509


>gi|316963170|gb|EFV48940.1| putative small GTP-binding protein domain protein [Trichinella
           spiralis]
          Length = 579

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++   K+ ++G+ N GKSS+ N+L +K +  V   PG T+++  I LD    L+   D+ 
Sbjct: 259 LKTSIKVGVVGYPNVGKSSIINSLKRKAICRVGAQPGITKNIQEIALDKNITLI---DSP 315

Query: 276 GI 277
           G+
Sbjct: 316 GV 317


>gi|291520563|emb|CBK75784.1| GTP-binding protein Era [Butyrivibrio fibrisolvens 16/4]
          Length = 302

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           ++G+ + I+G  N GKS+L N +  + +AI ++ P TTR+ + T+  D     +   DT 
Sbjct: 5   KSGF-VTIVGRPNVGKSTLMNHIIGQKIAITSNKPQTTRNRIQTVYTDENVGQIVFLDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           G+ +  + + +  +      + + DLIL L E ++K
Sbjct: 64  GMHQAKNKLGEYMMSAAKSTINDVDLILWLIEPDTK 99


>gi|261337501|ref|ZP_05965385.1| GTP-binding protein [Bifidobacterium gallicum DSM 20093]
 gi|270277898|gb|EFA23752.1| GTP-binding protein [Bifidobacterium gallicum DSM 20093]
          Length = 523

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 97/230 (42%), Gaps = 30/230 (13%)

Query: 209 QGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           Q K G   R G   V ++G++NAGKSSL N L      +   +  T    +      +G 
Sbjct: 280 QVKRGSRRRTGLPTVAVVGYTNAGKSSLTNRLTGSSELVENALFATLDTAVRRAQSADGR 339

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEI 308
                DT G          E  K T  EV  ADLI+                   +LK+I
Sbjct: 340 RYAYVDTVGFVRRLPTQLVEAFKSTLEEVGEADLIVHVVDSSHPDPFSQIDAVNDVLKDI 399

Query: 309 NSKKEIS----FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           +   EI     F K  D I    +  + S   + +  ++SS +GEG++ L   ++ +L  
Sbjct: 400 DGVGEIPTLTVFNK-ADLIDNAKRERIASLMPDAF--IVSSASGEGIDTLRESVEGLLPR 456

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE-NLRLAS 413
              ++   +P     L  +++   + E+ +L+ +D G+ +IA  + RLA+
Sbjct: 457 PDVQVEALLPYTAGSL--INRIREFGELTALDYRDTGIAVIARVDDRLAA 504


>gi|253991552|ref|YP_003042908.1| GTPase HflX [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638430|emb|CAR67052.1| gtp-binding protein hflx [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783002|emb|CAQ86167.1| gtp-binding protein hflx [Photorhabdus asymbiotica]
          Length = 426

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 27/209 (12%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ +  IL   + +     QG+      +   + ++G++NAGKSSLFN +   +V     
Sbjct: 168 RDKIRQILSRLSRVEKQREQGRQARNKADIPTVSLVGYTNAGKSSLFNCMTSAEVYAADQ 227

Query: 250 IPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILL-- 304
           +  T    L  I++D  G  V ++DT G IR    D+V     K T  E   A L+L   
Sbjct: 228 LFATLDPTLRRIEVDDVGTAV-LADTVGFIRHLPHDLV--AAFKATLQETRQATLLLHVV 284

Query: 305 ----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISS 345
                     +  ++S  E      I  + +  K D+   +T   D           +S+
Sbjct: 285 DAVDNRIDENIAAVDSVLEEIDAHEIPVLLVMNKIDMLGDFTPRIDRNEDNLPVRVWLSA 344

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIP 374
            TGEG+  L+  +   LS +       +P
Sbjct: 345 RTGEGIPLLLKALTERLSGEIAHYELRLP 373


>gi|154273605|ref|XP_001537654.1| nucleolar GTP-binding protein 2 [Ajellomyces capsulatus NAm1]
 gi|150415262|gb|EDN10615.1| nucleolar GTP-binding protein 2 [Ajellomyces capsulatus NAm1]
          Length = 598

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 324 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLI---DCPG 380

Query: 277 -IRETDDIVEKEGIKRTFLEVENAD 300
            +  +++  E++ + R  + VEN +
Sbjct: 381 VVPPSNNDTEEDILLRGVVRVENVE 405


>gi|193063717|ref|ZP_03044805.1| putative GTPase of unknown function subfamily [Escherichia coli
           E22]
 gi|260847115|ref|YP_003224893.1| hypothetical protein ECO103_5080 [Escherichia coli O103:H2 str.
           12009]
 gi|192930704|gb|EDV83310.1| putative GTPase of unknown function subfamily [Escherichia coli
           E22]
 gi|257762262|dbj|BAI33759.1| hypothetical protein ECO103_5080 [Escherichia coli O103:H2 str.
           12009]
          Length = 291

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           I I+G S  GKSSL N L + +V+ V+D+   TRDVL   L    + + I D  G+ E
Sbjct: 39  IGIMGKSGTGKSSLCNELFQGEVSPVSDVNACTRDVLRFRLRSGRHSLVIVDLPGVGE 96


>gi|119776156|ref|YP_928896.1| GTP-binding protein HflX [Shewanella amazonensis SB2B]
 gi|119768656|gb|ABM01227.1| GTP-binding protein HflX [Shewanella amazonensis SB2B]
          Length = 435

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 98/228 (42%), Gaps = 36/228 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFN L   +V     +  T    L   L+L      ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNTLTSAEVYAADQLFATLDPTLR-KLELPDGAAILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKK--EISFPK 318
             D+V     K T  E   ADL+L                   +LKEI++ +  ++    
Sbjct: 259 PHDLV--AAFKATLQETREADLLLHVIDCADEKMRDNIEQVQAVLKEIDADEIPQLIVCN 316

Query: 319 NIDFIFIGTKSDLYSTYT-EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            ID +  G K  +    T + +   +S+   +GL+ L   ++ ++ N   +L   IP+  
Sbjct: 317 KIDLVE-GIKPAIDRDDTGKPFRVWLSAQQNQGLDLLRQAVQELVGNVIAELTLKIPATA 375

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419
            H  +L Q  R   +      D G  I++  L      RLA  S G++
Sbjct: 376 GH--YLGQFYRLDAIQQKEYDDLGNCILSVRLPDADWRRLAKQSQGEL 421


>gi|311281133|ref|YP_003943364.1| GTP-binding protein HSR1-related protein [Enterobacter cloacae
           SCF1]
 gi|308750328|gb|ADO50080.1| GTP-binding protein HSR1-related protein [Enterobacter cloacae
           SCF1]
          Length = 287

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +L L   + SHI    L  +I     I I+G + AGKSSL NAL   +V+ V+++   TR
Sbjct: 14  LLSLPVTVRSHILD-HLCRLIHYEPVIGIMGKTGAGKSSLCNALFATEVSPVSNVTACTR 72

Query: 256 DVLTIDLDLEGYLVKISDTAGIRE 279
           + L   L      + + D  G+ E
Sbjct: 73  EPLCFRLQAGERFMTLVDLPGVGE 96


>gi|290956440|ref|YP_003487622.1| ATP GTP-binding protein [Streptomyces scabiei 87.22]
 gi|260645966|emb|CBG69057.1| putative ATP GTP-binding protein [Streptomyces scabiei 87.22]
          Length = 369

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKK---DVAIVTDIPGTTRDVLTID--LDLEGYLVKIS 272
           +G   V+LG S AGKS+L NAL  +   DV  + D+ G  R   T    L L G  V I 
Sbjct: 203 SGGTSVLLGQSGAGKSTLANALLGENVMDVQAIRDVDGKGRHTTTTRNLLALPGGGVLI- 261

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVE 297
           DT G+R       + G+ + F E+E
Sbjct: 262 DTPGLRGVGLWDAESGVGQVFAEIE 286


>gi|237752720|ref|ZP_04583200.1| GTP-binding protein Era [Helicobacter winghamensis ATCC BAA-430]
 gi|229376209|gb|EEO26300.1| GTP-binding protein Era [Helicobacter winghamensis ATCC BAA-430]
          Length = 296

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 4/98 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + +LG  NAGKS+  N L  + + +V+     TR  + + L +EG   +   DT GI + 
Sbjct: 10  VAVLGRPNAGKSTFLNTLLGEKLTLVSHKANATRKRMHLVL-MEGETQIVFVDTPGIHKQ 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
           + ++ +  +K     +++ D++L L   + K  IS+ K
Sbjct: 69  EKLLNQYMLKEALQALQDCDVLLFLAPASDK--ISYYK 104


>gi|259907179|ref|YP_002647535.1| putative GTPase HflX [Erwinia pyrifoliae Ep1/96]
 gi|224962801|emb|CAX54258.1| GTP-binding protein HflX [Erwinia pyrifoliae Ep1/96]
 gi|283476987|emb|CAY72879.1| GTP-binding protein hflX [Erwinia pyrifoliae DSM 12163]
 gi|310765330|gb|ADP10280.1| putative GTPase HflX [Erwinia sp. Ejp617]
          Length = 426

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 103/258 (39%), Gaps = 39/258 (15%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +S    QG+      +   + ++G++NAGKS+LFN L   +V     +  T    L  +D
Sbjct: 181 VSKQREQGRQARNKADVPTVSLVGYTNAGKSTLFNRLTSAEVYAADQLFATLDPTLRRVD 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
           +   G +V ++DT G IR    D+V     K T  E   A L+L    I    ++   +N
Sbjct: 241 VADVGEVV-LADTVGFIRHLPHDLV--AAFKATLQETREAALLL---HIVDAADLRIEEN 294

Query: 320 IDFI---------------FIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELI 355
           ID +                +  K D+   +    D           +S+ TGEG+  L 
Sbjct: 295 IDAVNVVLEEIESAEIPSLLVMNKIDMLDGFVPRIDRDEENLPVRVWLSAQTGEGIPLLF 354

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
             +   L+ +  +    +P     L      +R ++    NE+D  L +    +R+  V 
Sbjct: 355 QALTERLAGEIAQFELRLPPAAGRLRSRFYQLRAID-KEWNEEDGSLGL---QVRMPIVD 410

Query: 416 LGKITGCVDVEQLLDIIF 433
             ++  C    +L+D I 
Sbjct: 411 WRRL--CKQEPELVDYII 426


>gi|139439631|ref|ZP_01773044.1| Hypothetical protein COLAER_02071 [Collinsella aerofaciens ATCC
           25986]
 gi|133774972|gb|EBA38792.1| Hypothetical protein COLAER_02071 [Collinsella aerofaciens ATCC
           25986]
          Length = 429

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 25/162 (15%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGI 277
            +++ + G++NAGKS+L N L    V +  D    T D  T    L G   + I+DT G 
Sbjct: 209 AFRVALAGYTNAGKSTLLNRLTGSTV-LSQDKLFATLDPTTRSYRLPGGRGMTITDTVGF 267

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFP- 317
            +       +  K T  EV  ADLIL                   +L EI + + ++   
Sbjct: 268 IQKLPHGLVDAFKSTLSEVLGADLILKVVDASDEDYERQLEAVDRVLDEIGAGERLTLTV 327

Query: 318 -KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
              ID +    +      Y E    L S+ TGEGL++L+++I
Sbjct: 328 FNKIDLLDSVDRLSFRRRYPEAV--LFSAQTGEGLDDLVDRI 367


>gi|114765425|ref|ZP_01444540.1| GTP-binding protein [Pelagibaca bermudensis HTCC2601]
 gi|114542268|gb|EAU45298.1| GTP-binding protein [Roseovarius sp. HTCC2601]
          Length = 217

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL- 239
           E+D +  + K    ++ FLK  +      G  G    +  ++   G SN GKSSL NAL 
Sbjct: 13  EDDAREAARKLFAGEVDFLKGVV------GMDGLPPDDRVEVCFAGRSNVGKSSLINALT 66

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
            +K +A  ++ PG T+++    L  E YLV +           +VEK
Sbjct: 67  GRKGIARASNTPGRTQEINFFTLGEERYLVDLPGYGFANAPVAVVEK 113


>gi|58337483|ref|YP_194068.1| GTP-binding protein Era [Lactobacillus acidophilus NCFM]
 gi|81311455|sp|Q5FJT7|ERA_LACAC RecName: Full=GTPase Era
 gi|58254800|gb|AAV43037.1| GTP-binding protein [Lactobacillus acidophilus NCFM]
          Length = 301

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + VAI ++ P TTR+ ++     +   V   DT GI +  
Sbjct: 11  VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDRMQVIFVDTPGIFKPH 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
             ++    K +   + + DL+L + E
Sbjct: 71  SKLDDYMDKASLSSLNDVDLVLFMVE 96


>gi|220931954|ref|YP_002508862.1| small GTP-binding protein [Halothermothrix orenii H 168]
 gi|219993264|gb|ACL69867.1| small GTP-binding protein [Halothermothrix orenii H 168]
          Length = 395

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 29/179 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGT---TRDVLTIDLDLEGYLVKISDTAGIR 278
           + ++G++NAGKS+L N L   +  +   +  T   T   LT+     G  + ISDT G  
Sbjct: 179 VALVGYTNAGKSTLLNTLTNANTEVADKLFATLDSTLRRLTLPF---GKQIIISDTVGFI 235

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEIN--SKKEISFP 317
           +          + T  E++ AD++L                   +LKE+    K++I   
Sbjct: 236 KKLPHQLVASFQATLEEIKEADILLHVVDSSEPELENHIKVVNAVLKELGVFHKEKIMVL 295

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             ID +  G   DL   Y       +S+ +G+ ++ L+ KI  I+ N+   +   IP H
Sbjct: 296 NKIDRLEKGQLLDLGIKYPRAVP--VSALSGKCIDNLMGKICEIMLNEMTTVHLKIPYH 352


>gi|307132117|ref|YP_003884133.1| membrane-associated, 16S rRNA-binding GTPase [Dickeya dadantii
           3937]
 gi|306529646|gb|ADM99576.1| membrane-associated, 16S rRNA-binding GTPase [Dickeya dadantii
           3937]
          Length = 301

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 37/193 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  + + +  EG Y     DT G+   
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRI-MGIHTEGPYQAIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I EK  I R             L    +   I   + I F+  GT       +T++ +
Sbjct: 68  --IEEKRAINR-------------LMNRAASSSIGDVELIIFVVEGTH------WTDDDE 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++    +    L  INK+ ++ ++K K LP        H+  LS+ + +L++  ++ E
Sbjct: 107 MVVNKLRDQKTPVLLAINKVDNV-ADKTKLLP--------HIQMLSEKMNFLDVVPISAE 157

Query: 398 KDCGLDIIAENLR 410
           K   +D IA  +R
Sbjct: 158 KGTNVDTIAAIVR 170


>gi|295113743|emb|CBL32380.1| ribosome biogenesis GTPase YqeH [Enterococcus sp. 7L76]
          Length = 369

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 159 EKYREGRDVYVVGVTNVGKSTLINQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 218

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 219 I---DTPGI 224


>gi|257440899|ref|ZP_05616654.1| GTP-binding protein HflX [Faecalibacterium prausnitzii A2-165]
 gi|257196679|gb|EEU94963.1| GTP-binding protein HflX [Faecalibacterium prausnitzii A2-165]
          Length = 421

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 28/182 (15%)

Query: 217 RNGYKIV-ILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           + G  +V ++G++N GKSSL NAL     A+ D+   T  P + + VL       G  V 
Sbjct: 205 KTGMPVVSLVGYTNVGKSSLMNALCGPSVAEADMLFATLDPTSRKLVLP-----SGMAVL 259

Query: 271 ISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP---------- 317
           + DT G   R   ++V  E  K T  E   +D+I+ + +  + ++E              
Sbjct: 260 LVDTVGFVSRLPHNLV--EAFKSTLEEAAWSDVIVRVADAGDDQREEQLAVTDEVLDGLD 317

Query: 318 -KNIDFIFIGTKSDLYSTYTEEYDHLISSF-TGEGLEELINKIKSILSNKFKKLPFSIPS 375
             +I  + +  K D  +    + D L++S  TG GL+ L+ K+  +LS++   +   +P 
Sbjct: 318 CADIPRLTVYNKCDKPNALNFDPDILLTSAKTGYGLDALLKKLDELLSDRVHTIRVLLPY 377

Query: 376 HK 377
            K
Sbjct: 378 DK 379


>gi|120596877|ref|YP_961451.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella sp.
           W3-18-1]
 gi|166225984|sp|A1RE02|ENGB_SHESW RecName: Full=Probable GTP-binding protein EngB
 gi|120556970|gb|ABM22897.1| cell division checkpoint GTPase YihA [Shewanella sp. W3-18-1]
          Length = 219

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLD 263
           +H+ Q   G++   G +I   G SNAGKSS  NAL  +K +A  +  PG T+ +   +LD
Sbjct: 21  AHLDQYLPGDV---GVEIAFAGRSNAGKSSALNALTEQKSLARTSKTPGRTQLINVFELD 77

Query: 264 LEGYLVKI 271
            +  LV +
Sbjct: 78  SQRRLVDL 85


>gi|326803787|ref|YP_004321605.1| ribosome biogenesis GTPase YqeH [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650122|gb|AEA00305.1| ribosome biogenesis GTPase YqeH [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 370

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 15/100 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKD-----VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + I+G SN GKS+L N++ +       V   +  PGTT D++ I  D    L+  
Sbjct: 163 RKGRNVYIVGVSNVGKSTLINSMLRAQGFSDSVITTSQFPGTTLDLIKIPFDEASDLI-- 220

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            DT GI        K+    T L+ ++ + IL  K I  +
Sbjct: 221 -DTPGIL-------KDSQMTTLLDYKSIEQILPQKRIKPR 252


>gi|322502311|emb|CBZ37395.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 567

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 9/85 (10%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           G+ GE  R    + ++G+ N GKSS+ NAL +K V  V ++PG T     ++L  +   +
Sbjct: 295 GETGE--RKAIVVGVIGYPNVGKSSIINALKRKHVVGVGNMPGFTTGNTEVELRSD---I 349

Query: 270 KISDTAGI----RETDDIVEKEGIK 290
           ++ D  G+     ++ D+V +  I+
Sbjct: 350 RVMDCPGVVSPGEDSGDVVLRNAIR 374


>gi|307594176|ref|YP_003900493.1| GTP-binding proten HflX [Vulcanisaeta distributa DSM 14429]
 gi|307549377|gb|ADN49442.1| GTP-binding proten HflX [Vulcanisaeta distributa DSM 14429]
          Length = 375

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ + G+++AGK++LFN LA++    V   P  T D  +  ++  G    ++DT G  + 
Sbjct: 191 QVALTGYTSAGKTTLFNRLARES-KYVDGKPFATLDTYSRLVNFNGLNAILTDTIGFIDD 249

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
              +  E    T  EV NADL+L + +I+
Sbjct: 250 LPPLLIESFYATIAEVLNADLVLFMMDIS 278


>gi|303320761|ref|XP_003070375.1| GTP-binding family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240110071|gb|EER28230.1| GTP-binding family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320033153|gb|EFW15102.1| nuclear/nucleolar GTP-binding protein [Coccidioides posadasii str.
           Silveira]
          Length = 555

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+       
Sbjct: 322 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLIDCPGVVP 381

Query: 277 IRETDDIVEKEGIKRTFLEVEN 298
              TD   E++ + R  + VEN
Sbjct: 382 PSNTD--TEEDILLRGVVRVEN 401


>gi|251796247|ref|YP_003010978.1| GTP-binding protein Era [Paenibacillus sp. JDR-2]
 gi|247543873|gb|ACT00892.1| GTP-binding protein Era [Paenibacillus sp. JDR-2]
          Length = 299

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 9/67 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKIS 272
           R+G+ + I+G  N GKS+L N L  + +AI++D P TTR+    V T D     +L    
Sbjct: 7   RSGF-VAIIGRPNVGKSTLMNHLIGQKIAIMSDKPQTTRNKIHGVYTTDTSQIVFL---- 61

Query: 273 DTAGIRE 279
           DT GI +
Sbjct: 62  DTPGIHK 68


>gi|187479806|ref|YP_787831.1| hypothetical protein BAV3336 [Bordetella avium 197N]
 gi|115424393|emb|CAJ50946.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 464

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
           KI ++GHSN GK+SL   L +  D   V D  GTTR V  +   + G   ++  DT G+ 
Sbjct: 6   KIAVVGHSNTGKTSLLRTLTRDPDFGEVADTAGTTRHVQGVLTRMPGEGAIEWFDTPGME 65

Query: 279 ETDDIVE 285
           ++  ++E
Sbjct: 66  DSVALLE 72


>gi|71897603|ref|ZP_00679848.1| GTP-binding protein [Xylella fastidiosa Ann-1]
 gi|71732506|gb|EAO34559.1| GTP-binding protein [Xylella fastidiosa Ann-1]
          Length = 219

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +G ++   G SNAGKSS+ N L +++ +A V+  PG T+ ++   +  + YLV +
Sbjct: 40  DGSEVAFAGRSNAGKSSVLNTLTRQNALARVSKTPGRTQQLVYFTVTPQRYLVDL 94


>gi|325509175|gb|ADZ20811.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum EA 2018]
          Length = 283

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 9/90 (10%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           S K  LN++L  K  + +  ++G    IIR    ++++G  N GKSS  N +AK  VA V
Sbjct: 98  SIKPALNELL--KPKLDNMAAKGIQNYIIR----VMVVGIPNVGKSSFINKMAKNKVAKV 151

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            + PG T+    I  ++    +++ DT G+
Sbjct: 152 GNKPGVTKSKQWIKTNIG---IELMDTPGV 178


>gi|315026558|gb|EFT38490.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX2137]
          Length = 369

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 159 EKYREGRDVYVVGVTNVGKSTLINQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 218

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 219 I---DTPGI 224


>gi|312958653|ref|ZP_07773173.1| GTP-binding protein [Pseudomonas fluorescens WH6]
 gi|311287196|gb|EFQ65757.1| GTP-binding protein [Pseudomonas fluorescens WH6]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFN + K DV     +  T    L  +D
Sbjct: 182 VRSQREQSRRGRSRADIPTVSLVGYTNAGKSTLFNNVTKSDVYAADQLFATLDPTLRRLD 241

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           +D  G +V ++DT G IR     +  E  + T  E  N+DL+L
Sbjct: 242 IDDLGPIV-LADTVGFIRHLPHKL-VEAFRSTLEESSNSDLLL 282


>gi|291562528|emb|CBL41344.1| ferrous iron transporter FeoB [butyrate-producing bacterium SS3/4]
          Length = 665

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G+ N GK++LFNA     +  V + PG T + +  +   +G  +++ DT GI    
Sbjct: 10  VCFVGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERMEGETSYKGRKIRVIDTPGIYSLT 68

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
               +E + R  +E +  D+I+
Sbjct: 69  SYTMEELVTRRCIEEDGVDVIV 90


>gi|257875519|ref|ZP_05655172.1| GTP-binding protein YqeH [Enterococcus casseliflavus EC20]
 gi|257809685|gb|EEV38505.1| GTP-binding protein YqeH [Enterococcus casseliflavus EC20]
          Length = 372

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI-----VTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + K+   I      +  PGTT D + I LD   +L
Sbjct: 162 ETYREGRDVYVVGVTNVGKSTLINQIIKQTAGINELITTSRFPGTTLDKIEIPLDDGHFL 221

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 222 I---DTPGI 227


>gi|242399005|ref|YP_002994429.1| HflX-related GTP-binding protein [Thermococcus sibiricus MM 739]
 gi|242265398|gb|ACS90080.1| HflX-related GTP-binding protein [Thermococcus sibiricus MM 739]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G++NAGKS+L N LA +++     +  TT D  T    + G    I+DT G    D
Sbjct: 188 IALAGYTNAGKSTLLNTLANEEIETKMQM-FTTLDTTTRRFMMNGKKTLITDTVGF--ID 244

Query: 282 DIVE--KEGIKRTFLEVENADLILLLKEIN 309
           D+     E    T  E+  AD+ILL+ +I+
Sbjct: 245 DLPPFIVEAFHSTLEEIIKADIILLILDIS 274


>gi|218691137|ref|YP_002399349.1| putative GTPase [Escherichia coli ED1a]
 gi|218428701|emb|CAR09491.1| conserved hypothetical protein; putataive GTPase [Escherichia coli
           ED1a]
          Length = 294

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 15/200 (7%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHGVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFL-EVENADLILLLK 306
            + G TR    + L L    + + D  GI ET     E   + R  L E++    IL   
Sbjct: 68  PLNGCTRQAHRLTLQLGERRMTLVDLPGIGETPQHDQEYRALYRQLLPELDLIIWILRSD 127

Query: 307 EINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELI 355
           E     +I+  + +         F+F+ + +D      EE++      S      L  +I
Sbjct: 128 ERAYAADIAMHQFLLNEGADPSRFLFVLSHADRMFP-AEEWNATEKCPSRHQELSLATVI 186

Query: 356 NKIKSILSNKFKKLPFSIPS 375
            ++ ++  + F  LP + P+
Sbjct: 187 ARVATLFPSSFPVLPVAAPA 206


>gi|29377339|ref|NP_816493.1| GTP-binding protein YqeH [Enterococcus faecalis V583]
 gi|227554296|ref|ZP_03984343.1| GTP-binding protein [Enterococcus faecalis HH22]
 gi|29344806|gb|AAO82563.1| GTPase of unknown function [Enterococcus faecalis V583]
 gi|227176586|gb|EEI57558.1| GTP-binding protein [Enterococcus faecalis HH22]
 gi|315575232|gb|EFU87423.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0309B]
 gi|315582408|gb|EFU94599.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0309A]
          Length = 369

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 159 EKYREGRDVYVVGVTNVGKSTLINQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 218

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 219 I---DTPGI 224


>gi|25028740|ref|NP_738794.1| GTP-binding protein Era [Corynebacterium efficiens YS-314]
 gi|23494026|dbj|BAC18994.1| putative GTP-binding protein [Corynebacterium efficiens YS-314]
          Length = 323

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 4/104 (3%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           L  ++ +   +S     E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR 
Sbjct: 9   LPTRDPVRGSMSFTDTPEGFRSGF-VSFVGRPNTGKSTLTNALVGEKIAITADQPETTRH 67

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEK---EGIKRTFLEVE 297
            +   +  E   + + DT G+     ++ +   E +K T+ +V+
Sbjct: 68  PIRGLVHREDAQIIVVDTPGLHRPRTLLGERLNESVKDTYSDVD 111


>gi|46191061|ref|ZP_00120704.2| COG2262: GTPases [Bifidobacterium longum DJO10A]
 gi|189439027|ref|YP_001954108.1| GTPase [Bifidobacterium longum DJO10A]
 gi|312132467|ref|YP_003999806.1| hflx [Bifidobacterium longum subsp. longum BBMN68]
 gi|189427462|gb|ACD97610.1| GTPase [Bifidobacterium longum DJO10A]
 gi|311773394|gb|ADQ02882.1| HflX [Bifidobacterium longum subsp. longum BBMN68]
          Length = 501

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 28/165 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G++NAGKSSL N L       + A+   +    R   T D     Y+    DT G 
Sbjct: 283 VAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRAKTRDGRAYAYV----DTVGF 338

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL------------LLKEINSK-KEISFPKNIDFIF 324
                    E  K T  EV  AD+IL             +  +N    +I    +I  I 
Sbjct: 339 VRRLPTQLVEAFKSTLEEVAEADVILHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRIL 398

Query: 325 IGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSIL 362
           +  K+D     T E          ++S++TGEGL+EL   ++S+L
Sbjct: 399 VFNKADQADEATRERLAALQPDAFIVSAYTGEGLDELRTAVESLL 443


>gi|323453654|gb|EGB09525.1| hypothetical protein AURANDRAFT_71340 [Aureococcus anophagefferens]
          Length = 1193

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           +S  +   L    R G+ + ++G  N GKS+L NAL  +D+ I      TTR  +    +
Sbjct: 856 ASGPAPATLATPFRAGF-VGVVGSPNVGKSTLTNALLGQDLCITNSKAQTTRHRILGVAN 914

Query: 264 LEGYLVKISDTAGI 277
            +GY + +SDT GI
Sbjct: 915 GDGYQLVLSDTPGI 928


>gi|315151732|gb|EFT95748.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0012]
          Length = 369

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 159 EKYREGRDVYVVGVTNVGKSTLINQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 218

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 219 I---DTPGI 224


>gi|313884139|ref|ZP_07817905.1| ribosome biogenesis GTPase Era [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620586|gb|EFR32009.1| ribosome biogenesis GTPase Era [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 301

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 29/174 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N +  + +AI++D   TTR+ +  +  D +  +V I DT GI + 
Sbjct: 11  VALIGRPNVGKSTLLNKVVGQKIAIMSDKAQTTRNRIQGVYTDADSQVVFI-DTPGIHKP 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNID---FIFIGTKS 329
              +    +K  +  ++ AD + ++  +N+ ++I           KN+    F+ I  K 
Sbjct: 70  KHALGNFMLKTAYSALQGADAVCVV--VNAAEKIGPGDRLVIERAKNVQVPLFLLI-NKI 126

Query: 330 DLYS-----TYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           DL S        E Y  L        IS+  G  + EL+  +K +L    +  P
Sbjct: 127 DLVSPEQVLQAIESYKDLADFAQVFPISALEGNNVPELVEGLKEVLPQGPQYYP 180


>gi|312143999|ref|YP_003995445.1| GTP-binding protein Era [Halanaerobium sp. 'sapolanicus']
 gi|311904650|gb|ADQ15091.1| GTP-binding protein Era [Halanaerobium sp. 'sapolanicus']
          Length = 293

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + + I++  P TTR+ +  I  + +G ++ I DT GI + 
Sbjct: 8   VTVIGRPNVGKSTLVNNLVGEKINIISPRPQTTRNSIKAIYTEEKGQIIFI-DTPGIHQA 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
            + ++K  ++  +  ++  D+I+ +
Sbjct: 67  RNKLDKFMLEEAYSSLDGIDIIIFI 91


>gi|257865892|ref|ZP_05645545.1| GTP-binding protein YqeH [Enterococcus casseliflavus EC30]
 gi|257872225|ref|ZP_05651878.1| GTP-binding protein YqeH [Enterococcus casseliflavus EC10]
 gi|257799826|gb|EEV28878.1| GTP-binding protein YqeH [Enterococcus casseliflavus EC30]
 gi|257806389|gb|EEV35211.1| GTP-binding protein YqeH [Enterococcus casseliflavus EC10]
          Length = 372

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI-----VTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + K+   I      +  PGTT D + I LD   +L
Sbjct: 162 ETYREGRDVYVVGVTNVGKSTLINQIIKQTAGINELITTSRFPGTTLDKIEIPLDDGHFL 221

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 222 I---DTPGI 227


>gi|229549019|ref|ZP_04437744.1| GTP-binding protein [Enterococcus faecalis ATCC 29200]
 gi|257421576|ref|ZP_05598566.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|293382471|ref|ZP_06628406.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis R712]
 gi|293387145|ref|ZP_06631706.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis S613]
 gi|294779514|ref|ZP_06744909.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis PC1.1]
 gi|300860377|ref|ZP_07106464.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TUSoD Ef11]
 gi|307268318|ref|ZP_07549699.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX4248]
 gi|307272112|ref|ZP_07553375.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0855]
 gi|307276172|ref|ZP_07557303.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX2134]
 gi|307280576|ref|ZP_07561624.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0860]
 gi|307289801|ref|ZP_07569737.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0411]
 gi|312901412|ref|ZP_07760689.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0470]
 gi|312904375|ref|ZP_07763536.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0635]
 gi|312906526|ref|ZP_07765528.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis DAPTO 512]
 gi|312910471|ref|ZP_07769317.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis DAPTO 516]
 gi|312951126|ref|ZP_07770031.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0102]
 gi|229305812|gb|EEN71808.1| GTP-binding protein [Enterococcus faecalis ATCC 29200]
 gi|257163400|gb|EEU93360.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|291080155|gb|EFE17519.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis R712]
 gi|291083416|gb|EFE20379.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis S613]
 gi|294453393|gb|EFG21800.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis PC1.1]
 gi|300849416|gb|EFK77166.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TUSoD Ef11]
 gi|306499135|gb|EFM68614.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0411]
 gi|306503942|gb|EFM73159.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0860]
 gi|306507166|gb|EFM76305.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX2134]
 gi|306511228|gb|EFM80235.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0855]
 gi|306515344|gb|EFM83878.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX4248]
 gi|310627469|gb|EFQ10752.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis DAPTO 512]
 gi|310630902|gb|EFQ14185.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0102]
 gi|310632274|gb|EFQ15557.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0635]
 gi|311289243|gb|EFQ67799.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis DAPTO 516]
 gi|311291488|gb|EFQ70044.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0470]
 gi|315036287|gb|EFT48219.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0027]
 gi|315148844|gb|EFT92860.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX4244]
 gi|315154134|gb|EFT98150.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0031]
 gi|315156471|gb|EFU00488.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0043]
 gi|315159003|gb|EFU03020.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0312]
 gi|315162818|gb|EFU06835.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0645]
 gi|315169160|gb|EFU13177.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX1341]
 gi|315173920|gb|EFU17937.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX1346]
 gi|315576864|gb|EFU89055.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0630]
 gi|323481738|gb|ADX81177.1| GTPase of unknown function family protein [Enterococcus faecalis
           62]
 gi|327536029|gb|AEA94863.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis OG1RF]
          Length = 369

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 159 EKYREGRDVYVVGVTNVGKSTLINQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 218

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 219 I---DTPGI 224


>gi|209917480|ref|YP_002291564.1| hypothetical protein ECSE_0289 [Escherichia coli SE11]
 gi|209910739|dbj|BAG75813.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 291

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           I I+G S  GKSSL N L + +V+ V+D+   TRDVL   L    + + I D  G+ E
Sbjct: 39  IGIMGKSGTGKSSLCNELFRGEVSRVSDVNACTRDVLRFRLRSGRHSLVIVDLPGVGE 96


>gi|163781961|ref|ZP_02176961.1| hypothetical protein HG1285_03723 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883181|gb|EDP76685.1| hypothetical protein HG1285_03723 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 184

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +V +G SN GKSSL N +  +++A V+  PG TR +    L+   YLV +
Sbjct: 21  VVFVGRSNVGKSSLINMVTGRNIARVSKEPGRTRTINYFLLNDSVYLVDV 70


>gi|46201859|ref|ZP_00054208.2| COG1159: GTPase [Magnetospirillum magnetotacticum MS-1]
          Length = 303

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 28/171 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+ + ++G  NAGKS+L NAL    V+IV+    TTR  V+ I +  E  +V + DT 
Sbjct: 10  RCGF-VAVVGAPNAGKSTLVNALVGTKVSIVSPKVQTTRFRVMGIAMVGEAQVV-LVDTP 67

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL------------------LKEINSK-----K 312
           GI      +E+  +   +    +AD I L                  LKE   +      
Sbjct: 68  GIFAPKKRLERAMVAAAWGGTNDADHICLLIDAAKGYDDESRAIVDKLKETKRQAILVLN 127

Query: 313 EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           ++   K    + +  + D    +T+ +  +IS+  G+G+++L+  +  ++S
Sbjct: 128 KVDLVKRDKLLGLTAQLDAEGIFTDVF--MISALKGDGIDDLLAHLGKLVS 176


>gi|319786414|ref|YP_004145889.1| GTP-binding proten HflX [Pseudoxanthomonas suwonensis 11-1]
 gi|317464926|gb|ADV26658.1| GTP-binding proten HflX [Pseudoxanthomonas suwonensis 11-1]
          Length = 444

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE 279
           ++ ++G++NAGKS+LFNAL   D A   D    T D     + L G  V ++DT G +R+
Sbjct: 199 RVALVGYTNAGKSTLFNALTGAD-AYAADQLFATLDPTVRRISLPGGSVVLADTVGFVRD 257

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL 303
              ++V     + T  E   ADL+L
Sbjct: 258 LPHELV--AAFRSTLSEAREADLLL 280


>gi|315171886|gb|EFU15903.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX1342]
          Length = 369

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 159 EKYREGRDVYVVGVTNVGKSTLINQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 218

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 219 I---DTPGI 224


>gi|302537626|ref|ZP_07289968.1| ribosome small subunit-dependent GTPase A [Streptomyces sp. C]
 gi|302446521|gb|EFL18337.1| ribosome small subunit-dependent GTPase A [Streptomyces sp. C]
          Length = 373

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 203 ISSHISQGK--LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT---DIPGTTRDV 257
           +SSH  +G   L  ++ +G   V+LG S AGKS+L NAL   DV  V    ++ G  R  
Sbjct: 193 VSSHTGEGTDVLAAVVADGTS-VLLGVSGAGKSTLANALLGADVMDVQETREVDGKGRHT 251

Query: 258 LTID--LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            T    L L G  V I DT G+R       + G+ + F E+E
Sbjct: 252 TTTRNLLALPGGGVLI-DTPGLRGVGLFDAEAGVGQVFSEIE 292


>gi|302503121|ref|XP_003013521.1| hypothetical protein ARB_00339 [Arthroderma benhamiae CBS 112371]
 gi|291177085|gb|EFE32881.1| hypothetical protein ARB_00339 [Arthroderma benhamiae CBS 112371]
          Length = 290

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 44  RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLI---DCPG 100

Query: 277 -IRETDDIVEKEGIKRTFLEVENAD 300
            +  +++  E++ + R  + VEN +
Sbjct: 101 VVPPSNNATEEDILLRGVVRVENVE 125


>gi|282880853|ref|ZP_06289546.1| GTP-binding protein Era [Prevotella timonensis CRIS 5C-B1]
 gi|281305235|gb|EFA97302.1| GTP-binding protein Era [Prevotella timonensis CRIS 5C-B1]
          Length = 293

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGERISIATFKSQTTRHRIMGIVNTDDMQIVFSDTPGVLQPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  +  +   + +AD++L + ++    E    KNIDF+
Sbjct: 69  MQEYMLAFSESALADADILLYVTDVVETPE----KNIDFL 104


>gi|227519403|ref|ZP_03949452.1| GTP-binding protein [Enterococcus faecalis TX0104]
 gi|227073157|gb|EEI11120.1| GTP-binding protein [Enterococcus faecalis TX0104]
          Length = 369

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 159 EKYREGRDVYVVGVTNVGKSTLINQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 218

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 219 I---DTPGI 224


>gi|189485033|ref|YP_001955974.1| putative GTP-binding protein EngB [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170286992|dbj|BAG13513.1| putative GTP-binding protein EngB [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 193

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 222 IVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           I+  G SN GKSS+ NAL ++K++A ++  PG TR +    + L  ++V
Sbjct: 24  IIFSGRSNVGKSSVINALCSQKNLARISKTPGRTRSINVYSVSLRKWIV 72


>gi|156378015|ref|XP_001630940.1| predicted protein [Nematostella vectensis]
 gi|156217971|gb|EDO38877.1| predicted protein [Nematostella vectensis]
          Length = 429

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +GH+N GKSSL N L  K V  V+  PG T+   TI L      V++ D  G+
Sbjct: 185 VGHTNVGKSSLLNGLVGKKVVSVSRTPGHTKHFQTIFLTPS---VRLCDCPGL 234


>gi|83311358|ref|YP_421622.1| GTP-binding protein Era [Magnetospirillum magneticum AMB-1]
 gi|82946199|dbj|BAE51063.1| GTPase [Magnetospirillum magneticum AMB-1]
          Length = 303

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+ + ++G  NAGKS+L NAL    V+IV+    TTR  V+ I +  E  +V + DT 
Sbjct: 10  RCGF-VAVVGAPNAGKSTLVNALVGTKVSIVSPKVQTTRFRVMGIAMVGEAQVV-LVDTP 67

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI      +E+  +   +    +AD I LL
Sbjct: 68  GIFAPKKRLERAMVAAAWGGTNDADHICLL 97


>gi|307132703|ref|YP_003884719.1| putative GTPase [Dickeya dadantii 3937]
 gi|306530232|gb|ADN00163.1| predicted GTPase [Dickeya dadantii 3937]
          Length = 426

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 37/217 (17%)

Query: 194 NDILFLKNDISSHIS----------QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
            D   L+N IS  +S          QG+          + ++G++NAGKS+LFN +   D
Sbjct: 162 TDRRLLRNRISQILSRLEKVEKQREQGRRARTRAEVPTVSLVGYTNAGKSTLFNRMTSAD 221

Query: 244 VAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300
           V     +  T    L  I +D  G  V ++DT G IRE   D+V     K T  E   A 
Sbjct: 222 VYAADQLFATLDPTLRRISVDDVGDTV-LADTVGFIRELPHDLV--AAFKATLQETREAT 278

Query: 301 LILLL---------KEINSKKEISF---PKNIDFIFIGTKSDLYSTYTEEYDH------- 341
           L+L +         + I++  E+       +I F+ +  K D         D        
Sbjct: 279 LLLHVVDASDARVDENIDAVNEVLAEIEADDIPFMLVMNKIDRQENVEPRIDRDEENRPI 338

Query: 342 --LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
              +S+ TGEG+  L+  +   LS +       +P  
Sbjct: 339 RVWLSAQTGEGIPLLLQALTERLSGEIAHYSLHLPPQ 375


>gi|304439340|ref|ZP_07399252.1| ferrous iron transport protein B [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372122|gb|EFM25716.1| ferrous iron transport protein B [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 673

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I +LG  N+GKS+LFN L   +   V + PG T +    +   +     I D  G     
Sbjct: 6   IALLGQPNSGKSTLFNGLTGSNQH-VGNWPGKTVEKKEGEFSYKDTNYTIVDLPGTYGLS 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
              E+E I R ++E  NADLI ++ +
Sbjct: 65  ANSEEEVITREYIETGNADLIAIMAD 90


>gi|302560729|ref|ZP_07313071.1| GTP-binding protein Era [Streptomyces griseoflavus Tu4000]
 gi|302478347|gb|EFL41440.1| GTP-binding protein Era [Streptomyces griseoflavus Tu4000]
          Length = 320

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 10/124 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   + G  NAGKS+L NAL  + VAI ++ P TTR  +   +  E   + + DT G
Sbjct: 20  RAGFACFV-GRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHREDAQLILVDTPG 78

Query: 277 IRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEISFPKNIDFIFIGT 327
           + +   ++ +   + ++ T+ EV+       AD  +   +    KE++  K    I I T
Sbjct: 79  LHKPRTLLGERLNDVVRTTWAEVDAIGFCIPADQKIGPGDRFIAKELAGIKKTPKIAIVT 138

Query: 328 KSDL 331
           K+DL
Sbjct: 139 KTDL 142


>gi|254293935|ref|YP_003059958.1| GTP-binding protein Era [Hirschia baltica ATCC 49814]
 gi|254042466|gb|ACT59261.1| GTP-binding protein Era [Hirschia baltica ATCC 49814]
          Length = 331

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 6/115 (5%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-D 256
           + K DI + + + +     R G+ + ++G  NAGKS+L N L    V+IVT    TTR  
Sbjct: 8   YEKEDIEASLQEPRE---TRAGF-VAVIGSPNAGKSTLVNRLVGAKVSIVTHKVQTTRFQ 63

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           V  + +  +  +V + DT GI      +++  +K  +   E AD I+ L + +S+
Sbjct: 64  VRGVMMRGDAQVV-LVDTPGIFAPKHRLDRAMVKSAWDGAEGADQIIHLVDASSR 117


>gi|253998778|ref|YP_003050841.1| GTP-binding protein HSR1-like [Methylovorus sp. SIP3-4]
 gi|253985457|gb|ACT50314.1| GTP-binding protein HSR1-related [Methylovorus sp. SIP3-4]
          Length = 318

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++I+G  N GKS+L NAL  + +A V D P  T+     DL+ +   + I+DT G+
Sbjct: 118 RMMIMGIPNVGKSTLMNALLNRRIAKVGDEPAVTKSQQRFDLNDQ---MSITDTPGM 171


>gi|229544804|ref|ZP_04433529.1| GTP-binding protein [Enterococcus faecalis TX1322]
 gi|256854161|ref|ZP_05559526.1| GTP-binding protein YqeH [Enterococcus faecalis T8]
 gi|229310076|gb|EEN76063.1| GTP-binding protein [Enterococcus faecalis TX1322]
 gi|256711104|gb|EEU26147.1| GTP-binding protein YqeH [Enterococcus faecalis T8]
 gi|315030785|gb|EFT42717.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX4000]
          Length = 369

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 159 EKYREGRDVYVVGVTNVGKSTLINQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 218

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 219 I---DTPGI 224


>gi|296129057|ref|YP_003636307.1| GTPase EngC [Cellulomonas flavigena DSM 20109]
 gi|296020872|gb|ADG74108.1| GTPase EngC [Cellulomonas flavigena DSM 20109]
          Length = 361

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 7/63 (11%)

Query: 223 VILGHSNAGKSSLFNAL---AKKDVAIVTDIPGTTRDVLTIDLDLE----GYLVKISDTA 275
           V++GHS  GKS+L NAL   A++ V +V D+ G  R   T  + LE    G    + DT 
Sbjct: 213 VLVGHSGVGKSTLVNALVPDARRAVGVVNDVTGRGRHTSTSAVALEVPGAGAPTWVIDTP 272

Query: 276 GIR 278
           G+R
Sbjct: 273 GVR 275


>gi|228910174|ref|ZP_04073993.1| hypothetical protein bthur0013_43220 [Bacillus thuringiensis IBL
           200]
 gi|228849457|gb|EEM94292.1| hypothetical protein bthur0013_43220 [Bacillus thuringiensis IBL
           200]
          Length = 318

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 9/70 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R G  + ++G +N GKS+  N + K      ++V   +  PGTT D++ I LD E  
Sbjct: 155 EYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214

Query: 268 LVKISDTAGI 277
           L    DT GI
Sbjct: 215 LY---DTPGI 221


>gi|219684368|ref|ZP_03539312.1| GTP-binding protein Era [Borrelia garinii PBr]
 gi|219672357|gb|EED29410.1| GTP-binding protein Era [Borrelia garinii PBr]
          Length = 290

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 22/151 (14%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDT 274
           +++G+ + ILG  + GKS+L N++    ++I++ IP TTR+ +  I  D  G ++ I DT
Sbjct: 1   MKSGF-VAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFI-DT 58

Query: 275 AGI---RETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKN--IDFI 323
            G    ++  +I   + I  +  EVE   LIL + +I  K      K +   KN  I F+
Sbjct: 59  PGFHLSKKKFNIAMMKNIHSSIGEVE---LILYIIDIQDKPGEEENKMLEIIKNSKIKFL 115

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGE-GLEE 353
            +  K DL +T  +E    I+ F  E G+E+
Sbjct: 116 VLINKVDLKNTKIKE----ITQFLKEKGIED 142


>gi|15223206|ref|NP_172317.1| GTP-binding family protein [Arabidopsis thaliana]
 gi|6664306|gb|AAF22888.1|AC006932_5 T27G7.9 [Arabidopsis thaliana]
 gi|66792666|gb|AAY56435.1| At1g08410 [Arabidopsis thaliana]
 gi|133778880|gb|ABO38780.1| At1g08410 [Arabidopsis thaliana]
 gi|332190165|gb|AEE28286.1| P-loop containing nucleoside triphosphate hydrolase-like protein
           [Arabidopsis thaliana]
          Length = 589

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDI--------SSHISQGKLGEIIRNGYKIVILG 226
           +L  +++ D+  +   E+L+ + F   +I        +S  SQ   GE  R+   +  +G
Sbjct: 256 NLQKTDDPDIMIYGRDELLSRLQFEAQEIVKVRNSRAASVSSQSWTGEYQRDQAVVGFVG 315

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + N GKSS  NAL  +    VT  PG T+   T+
Sbjct: 316 YPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL 349


>gi|71274790|ref|ZP_00651078.1| GTP-binding protein, HSR1-related [Xylella fastidiosa Dixon]
 gi|71901070|ref|ZP_00683179.1| GTP-binding protein, HSR1-related [Xylella fastidiosa Ann-1]
 gi|170729963|ref|YP_001775396.1| ribosome biogenesis GTP-binding protein YsxC [Xylella fastidiosa
           M12]
 gi|71164522|gb|EAO14236.1| GTP-binding protein, HSR1-related [Xylella fastidiosa Dixon]
 gi|71729152|gb|EAO31274.1| GTP-binding protein, HSR1-related [Xylella fastidiosa Ann-1]
 gi|167964756|gb|ACA11766.1| GTP-binding protein [Xylella fastidiosa M12]
          Length = 219

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +G ++   G SNAGKSS+ N L +++ +A V+  PG T+ ++   +  + YLV +
Sbjct: 40  DGSEVAFAGRSNAGKSSVLNTLTRQNALARVSKTPGRTQQLVYFTVTPQRYLVDL 94


>gi|329577181|gb|EGG58651.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX1467]
          Length = 375

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 165 EKYREGRDVYVVGVTNVGKSTLVNQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 224

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 225 I---DTPGI 230


>gi|315658467|ref|ZP_07911339.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
           lugdunensis M23590]
 gi|315496796|gb|EFU85119.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
           lugdunensis M23590]
          Length = 295

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LA+K++A   + PG T+    I +   G ++++ DT GI
Sbjct: 123 RAMIVGIPNVGKSTLINKLARKNIAQTGNKPGVTKQQQWIKV---GKVLQLLDTPGI 176


>gi|311696679|gb|ADP99552.1| LOW QUALITY PROTEIN: HSR1-like GTP-binding protein [marine
           bacterium HP15]
          Length = 475

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETD 281
            ++GH N GKSS+   L++ D   +   PGTTR      L ++G  L  + DT G +   
Sbjct: 8   AVVGHPNKGKSSVVATLSQNDAIAIALEPGTTRRHQAYPLKVDGQTLYTLVDTPGFQRPR 67

Query: 282 DIVE 285
            ++E
Sbjct: 68  RVME 71


>gi|228992409|ref|ZP_04152340.1| hypothetical protein bpmyx0001_31510 [Bacillus pseudomycoides DSM
           12442]
 gi|228767434|gb|EEM16066.1| hypothetical protein bpmyx0001_31510 [Bacillus pseudomycoides DSM
           12442]
          Length = 425

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMQLPCGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLVAAFRSTLEEAREADVIL 280


>gi|229086906|ref|ZP_04219065.1| hypothetical protein bcere0022_34800 [Bacillus cereus Rock3-44]
 gi|228696416|gb|EEL49242.1| hypothetical protein bcere0022_34800 [Bacillus cereus Rock3-44]
          Length = 368

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 25/169 (14%)

Query: 203 ISSHISQG--KLGEII---RNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIP 251
           IS+   QG  +L E I   R+G  + ++G +N GKS+  N + K      ++V   +  P
Sbjct: 139 ISAAKGQGIRELAEAIEQYRDGKDVYVVGCTNVGKSTFINRMIKEFSEETENVITTSHFP 198

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           GTT D++ I LD +  L    DT GI     +    G +   L     ++  ++ ++N +
Sbjct: 199 GTTLDLIDIPLDEKSSLY---DTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEE 255

Query: 312 KEISFP--KNIDFIFIGTKS---------DLYSTYTEEYDHLISSFTGE 349
           + + F      D+I  G ++          ++ T  E+ D L     GE
Sbjct: 256 QTLFFGGLARFDYISGGRRAFTCHFSNRLPIHRTKLEKADELYEKHAGE 304


>gi|227833628|ref|YP_002835335.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454644|gb|ACP33397.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC
           700975]
          Length = 386

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  E   + + D
Sbjct: 86  EGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHPIRGLVHREDAQIVLVD 144

Query: 274 TAGIRETDDIVEK---EGIKRTFLEVE 297
           T G+     ++ +   E +K T+ +V+
Sbjct: 145 TPGLHRPRTLLGERLNEVVKDTYADVD 171


>gi|71894660|ref|YP_278768.1| GTPase EngB [Mycoplasma synoviae 53]
 gi|119369218|sp|Q4A5B4|ENGB_MYCS5 RecName: Full=Probable GTP-binding protein EngB
 gi|71851448|gb|AAZ44057.1| putative GTP-binding protein [Mycoplasma synoviae 53]
          Length = 187

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 7/53 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-------DVLTIDLDLEGY 267
           I   G SN GKSSL NAL  K +A V+  PG T+       ++  + +DL GY
Sbjct: 22  IAFWGRSNVGKSSLLNALTSKGLAKVSKTPGRTQLINFFENELNQVYVDLPGY 74


>gi|73748531|ref|YP_307770.1| putative GTP-binding protein [Dehalococcoides sp. CBDB1]
 gi|73660247|emb|CAI82854.1| putative GTP-binding protein [Dehalococcoides sp. CBDB1]
          Length = 382

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 11/190 (5%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E Q ++ +  M   L  L GQW    +H+             E       + V   I  L
Sbjct: 110 EGQLQVELAQMQYLLPRLAGQW----SHLERLGGGIGTRGPGESQLETDKRIVRTKIRNL 165

Query: 200 KNDISSHISQGKLGEIIRN--GYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           K  +   I   +L    R   G  +V ++G++N+GKSSL NA+A+ DV     +  T  D
Sbjct: 166 KEHLDEVIIHRELYRERRRMRGVPVVSLVGYTNSGKSSLLNAVARTDVLAENKLFATL-D 224

Query: 257 VLTIDLDLEGY-LVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             T  L + G   V ++DT G IR+    + K   + T  E+  ADL++ + +I +K   
Sbjct: 225 PTTRRLYINGLGNVLLTDTVGFIRKLPPAIVK-AFRATLEEINQADLLVHVVDITAKNAF 283

Query: 315 SFPKNIDFIF 324
              + ++ I 
Sbjct: 284 EQCQTVEKIL 293


>gi|315033123|gb|EFT45055.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0017]
          Length = 369

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 159 EKYREGRDVYVVGVTNVGKSTLINQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 218

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 219 I---DTPGI 224


>gi|310828626|ref|YP_003960983.1| ferrous iron transport protein B [Eubacterium limosum KIST612]
 gi|308740360|gb|ADO38020.1| ferrous iron transport protein B [Eubacterium limosum KIST612]
          Length = 676

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y++ ++G+ N+GK++LFN+L   ++  V + PG T +    DL      + + D  GI  
Sbjct: 3   YRVALVGNPNSGKTTLFNSLTGSNLY-VGNWPGVTIEKKEGDLRDTASKITLVDLPGIYS 61

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E + R FL  E  DLI+
Sbjct: 62  LAPYSMDEIVSRDFLLSEPPDLII 85


>gi|237751864|ref|ZP_04582344.1| ferrous iron transporter B [Helicobacter winghamensis ATCC BAA-430]
 gi|229376743|gb|EEO26834.1| ferrous iron transporter B [Helicobacter winghamensis ATCC BAA-430]
          Length = 488

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL   ++  V +  G T +      + +GY ++I D  G    
Sbjct: 6   KIALIGQPNVGKSLLVNALCHTNMK-VGNFTGVTIEKAQAQTEYKGYTLQIIDLPGTYSL 64

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
               ++E I R F+E    D+I+
Sbjct: 65  YGYSKEEQITREFIENGAYDVIV 87


>gi|224095021|ref|XP_002310331.1| predicted protein [Populus trichocarpa]
 gi|222853234|gb|EEE90781.1| predicted protein [Populus trichocarpa]
          Length = 302

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 208 SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLE 265
           S G+  +  R+   +  ILG SN GKSSL N LA KK+VA+ +  PG T+ +    ++  
Sbjct: 110 SSGRAKDCPRDDRPEFAILGRSNVGKSSLINVLARKKEVALTSKKPGKTQLINHFLVNKS 169

Query: 266 GYLVKISDTAGIRETDDIVEKEG---IKRTFLEVENADLILLL 305
            YLV +    G  +  D    +     K  FL  E    +LLL
Sbjct: 170 WYLVDLPG-YGFAKAPDSARMDWSSFTKGYFLNRETLVAVLLL 211


>gi|124808735|ref|XP_001348395.1| GTPase, putative [Plasmodium falciparum 3D7]
 gi|23497288|gb|AAN36834.1| GTPase, putative [Plasmodium falciparum 3D7]
          Length = 487

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G+ N GKS++ N+L KK V I   IPG T+    I L  + YL+   D  GI    
Sbjct: 313 IGLIGYPNVGKSAIINSLKKKVVCISACIPGQTKYWQFIKLTNKIYLI---DCPGIVPY- 368

Query: 282 DIVEKEGIKRTFLEVE 297
           DI + E I R  + +E
Sbjct: 369 DIEDSEKILRCTMRLE 384


>gi|25029412|ref|NP_739466.1| hypothetical protein CE2856 [Corynebacterium efficiens YS-314]
 gi|259508407|ref|ZP_05751307.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|23494700|dbj|BAC19666.1| hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259163961|gb|EEW48515.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 1281

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 14/114 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKIS 272
           + + + IV  G + AGKS+L +AL      +V+D     R   T D   LD +G   ++ 
Sbjct: 92  VADTFNIVFFGRTGAGKSTLLSALGGLSGGLVSD----GRSDFTTDVQPLDWQG--CRLY 145

Query: 273 DTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           DT GI     T    E E   R  +EV  AD++LL  +  S++   F K  D++
Sbjct: 146 DTPGINGWGRTRSRAELEEAARKAVEV--ADVVLLCFDSQSQQASEFRKVADWV 197


>gi|227904119|ref|ZP_04021924.1| GTP-binding protein Era [Lactobacillus acidophilus ATCC 4796]
 gi|227868138|gb|EEJ75559.1| GTP-binding protein Era [Lactobacillus acidophilus ATCC 4796]
          Length = 308

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + VAI ++ P TTR+ ++     +   V   DT GI +  
Sbjct: 18  VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDRMQVIFVDTPGIFKPH 77

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
             ++    K +   + + DL+L + E
Sbjct: 78  SKLDDYMDKASLSSLNDVDLVLFMVE 103


>gi|300778405|ref|ZP_07088263.1| GTP-binding protein Era [Chryseobacterium gleum ATCC 35910]
 gi|300503915|gb|EFK35055.1| GTP-binding protein Era [Chryseobacterium gleum ATCC 35910]
          Length = 291

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 10/97 (10%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  NAGKS+L N L  + +AIVT    TTR  +    + +   +  SDT G+ +    
Sbjct: 9   IVGKPNAGKSTLLNQLMGEKLAIVTQKAQTTRHRIFGIYNEDDLQIVFSDTPGVLDP--- 65

Query: 284 VEKEGIKRTFLE-----VENADLILLLKEINSKKEIS 315
             K G++   ++     +++AD+ L + ++  K E S
Sbjct: 66  --KYGLQEKMMDFVKDSLQDADVFLFIVDVTDKAEPS 100


>gi|190575834|ref|YP_001973679.1| ribosome biogenesis GTP-binding protein YsxC [Stenotrophomonas
           maltophilia K279a]
 gi|229463763|sp|B2FTY5|ENGB_STRMK RecName: Full=Probable GTP-binding protein EngB
 gi|190013756|emb|CAQ47391.1| putative ATP/GTP binding protein [Stenotrophomonas maltophilia
           K279a]
          Length = 200

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           G ++   G SNAGKSS  NAL +++ +A V+  PG T+ ++   +  E +LV +
Sbjct: 25  GAEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQVTPEAHLVDL 78


>gi|332883260|gb|EGK03543.1| GTP-binding protein Era [Dysgonomonas mossii DSM 22836]
          Length = 293

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 49/88 (55%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + V+I+T    TTR  +   ++ + Y +  SDT G+   +  
Sbjct: 9   IVGNPNVGKSTLMNLLVGEKVSIITSKAQTTRHRILGIVNTDEYQIVYSDTPGVLRPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311
           +++  +  +   + +AD++L + ++  K
Sbjct: 69  LQESMLNFSESALSDADVLLYMTDVVEK 96


>gi|323140518|ref|ZP_08075445.1| hydrogenase maturation GTPase HydF [Phascolarctobacterium sp. YIT
           12067]
 gi|322414970|gb|EFY05762.1| hydrogenase maturation GTPase HydF [Phascolarctobacterium sp. YIT
           12067]
          Length = 408

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           I I G  NAGKSSL NA+  +++AIV++  GTT D +   ++L     V I DT G+
Sbjct: 14  IGIFGKRNAGKSSLINAITSQELAIVSEQKGTTTDPVYKAMELLPLGPVMIIDTPGL 70


>gi|228998465|ref|ZP_04158056.1| hypothetical protein bmyco0003_30270 [Bacillus mycoides Rock3-17]
 gi|228761386|gb|EEM10341.1| hypothetical protein bmyco0003_30270 [Bacillus mycoides Rock3-17]
          Length = 425

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMQLPCGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLVAAFRSTLEEAREADVIL 280


>gi|229175010|ref|ZP_04302529.1| hypothetical protein bcere0006_40930 [Bacillus cereus MM3]
 gi|228608471|gb|EEK65774.1| hypothetical protein bcere0006_40930 [Bacillus cereus MM3]
          Length = 368

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 9/70 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R G  + ++G +N GKS+  N + K      ++V   +  PGTT D++ I LD E  
Sbjct: 155 EYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214

Query: 268 LVKISDTAGI 277
           L    DT GI
Sbjct: 215 LY---DTPGI 221


>gi|169831271|ref|YP_001717253.1| HSR1-like GTP-binding protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638115|gb|ACA59621.1| GTP-binding protein, HSR1-related [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 422

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 20/181 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG-IRE 279
           + ++G++NAGKSSL NAL    V+ V D    T D  +  L L    +V ++DT G IR 
Sbjct: 204 VALVGYTNAGKSSLLNALTGAVVS-VEDRLFATLDPTSRQLRLPTNEVVVLTDTVGFIRH 262

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF------------IGT 327
               +     + T  EV  ADL+L + +++     +    +D +             +  
Sbjct: 263 LPHHL-VAAFRATLEEVVEADLLLHVVDLSHPAHQAHITAVDGVLEELGAGGKPRLMVFN 321

Query: 328 KSDLYST----YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           K+DL            D  +S+ TG GL+ L   +   LS    +  F IP  +  L  L
Sbjct: 322 KTDLVEPGELDLLGRNDVAVSALTGAGLDTLRAAVADALSTWRTRERFLIPYSRTQLVAL 381

Query: 384 S 384
           +
Sbjct: 382 A 382


>gi|167951370|ref|ZP_02538444.1| Small GTP-binding protein domain [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 188

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--D 282
           +G  N GKS+LFN L +   A+V D PG TRD       L      + DT G+   D  D
Sbjct: 1   MGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRKYGMGRLGPGPYVVVDTGGLSGEDGVD 60

Query: 283 IVEKEGIKRTFLEVENADLILLLKE 307
           ++ ++ +++   E ++  L+L  +E
Sbjct: 61  LLMEQQVRQAIGEADHVLLLLDARE 85


>gi|21224475|ref|NP_630254.1| ribosome-associated GTPase [Streptomyces coelicolor A3(2)]
 gi|38257799|sp|Q9ZBT9|RSGA_STRCO RecName: Full=Putative ribosome biogenesis GTPase RsgA
 gi|4007698|emb|CAA22383.1| putative ATP GTP-binding protein [Streptomyces coelicolor A3(2)]
          Length = 366

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNAL---AKKDVAIVTDIPGTTRDVLTID--LDLEGYLVKIS 272
           +G   V+LG S AGKS+L NAL   A  DV  + D+ G  R   T    L L G  V I 
Sbjct: 200 SGGTAVLLGQSGAGKSTLANALLGEAAMDVQAIRDVDGKGRHTTTTRNLLALPGGGVLI- 258

Query: 273 DTAGIRETDDIVEKEGIKRTFLEV 296
           DT G+R         G+ + F E+
Sbjct: 259 DTPGLRGVGLFDAGNGVDQVFAEI 282


>gi|238798221|ref|ZP_04641707.1| Predicted GTPase [Yersinia mollaretii ATCC 43969]
 gi|238717958|gb|EEQ09788.1| Predicted GTPase [Yersinia mollaretii ATCC 43969]
          Length = 294

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 187 FSSKEVLNDILF----LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            + K VLN +      L +DI+  I Q  L  II     I I+G + AGKSSL NA+  +
Sbjct: 1   MTKKNVLNKLYLPLSILPSDIAQTIIQ-HLEGIINYEPVIGIMGKTGAGKSSLCNAIFSQ 59

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++  +++   TR   +  L +    + I D  G+ E+ D
Sbjct: 60  PLSPTSNVHACTRKAKSFRLSIGSRQMTIIDLPGVGESSD 99


>gi|332187780|ref|ZP_08389514.1| GTP-binding protein Era [Sphingomonas sp. S17]
 gi|332012130|gb|EGI54201.1| GTP-binding protein Era [Sphingomonas sp. S17]
          Length = 298

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 33/178 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  NAGKS+L NAL  + VAIV+    TTR  +L + ++ E  ++ + DT GI E 
Sbjct: 9   VAVVGAPNAGKSTLVNALVGQKVAIVSPKAQTTRAKLLGVAIEGEAQIL-LVDTPGIFEP 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------------PKN--IDFIF 324
              +++  +   +   E AD++ L+  ++ K  I                PK+  ++ + 
Sbjct: 68  KRRLDRAMVAAAWEGAEGADILALV--VDGKGGIGPKVTAIAESIAHRPEPKHLILNKVD 125

Query: 325 IGTKSDLYSTYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           I  K+ L   + E+ + +        +S+ TG+GL EL    K+ L+    + P+  P
Sbjct: 126 IADKARLLG-HAEKLNQVVPFDETWFVSAQTGDGLPEL----KTRLAGLMPQGPWHYP 178


>gi|327399772|ref|YP_004340641.1| GTP-binding protein Era-like-protein [Hippea maritima DSM 10411]
 gi|327182401|gb|AEA34582.1| GTP-binding protein Era-like-protein [Hippea maritima DSM 10411]
          Length = 297

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + ++G  N GKS+L N L  + +AIV+  P  TR  +   L+ + Y +   DT G
Sbjct: 3   KSGF-VAMIGKPNVGKSTLLNLLIGEKIAIVSPKPQATRKSVRGILNGKDYQIIFIDTPG 61

Query: 277 IRETD 281
           + E++
Sbjct: 62  VHESE 66


>gi|291407511|ref|XP_002720067.1| PREDICTED: guanine nucleotide binding protein-like 3
           (nucleolar)-like isoform 1 [Oryctolagus cuniculus]
          Length = 575

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 238 RLGEV-RTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVHLD---KFIR 293

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 294 LLDAPGI 300


>gi|282860195|ref|ZP_06269269.1| GTP-binding protein Era [Prevotella bivia JCVIHMP010]
 gi|282587016|gb|EFB92247.1| GTP-binding protein Era [Prevotella bivia JCVIHMP010]
          Length = 293

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 56/100 (56%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTDDAQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  ++ +   + +AD++L + ++  K E    KN+DF+
Sbjct: 69  MQEMMLQFSESALADADVLLYVTDVVEKPE----KNMDFL 104


>gi|302874334|ref|YP_003842967.1| GTP-binding protein Era [Clostridium cellulovorans 743B]
 gi|307689399|ref|ZP_07631845.1| GTP-binding protein Era [Clostridium cellulovorans 743B]
 gi|302577191|gb|ADL51203.1| GTP-binding protein Era [Clostridium cellulovorans 743B]
          Length = 296

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 24/163 (14%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++GY + I+G  N GKS+L N L  + ++IV+  P TTR+ +   L  + + +   DT
Sbjct: 1   MFKSGY-VAIIGRPNVGKSTLMNNLMGEKLSIVSPRPQTTRNNIQTILTKKDFQIIFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILL------------------LKEINSKKEISF 316
            G+ +    + +  +K     +++ DL++                   LK++NSKK +  
Sbjct: 60  PGMHKPKHKLGEFMMKSVSDSLKDVDLVVFMTTADGELGPGDKHILEDLKKVNSKKFLVV 119

Query: 317 PKNIDFIFIGTKSDLYSTYTE--EYDHL--ISSFTGEGLEELI 355
            K ID     T ++      E  E+D +  IS+  G+  ++L+
Sbjct: 120 NK-IDETKAETVAETLQVVGELVEFDEIIPISALNGKNTDKLL 161


>gi|227873761|ref|ZP_03991990.1| small GTP-binding protein [Oribacterium sinus F0268]
 gi|227840377|gb|EEJ50778.1| small GTP-binding protein [Oribacterium sinus F0268]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I   G  NAGKSS FNA+A + +++ ++  GTT D +   ++ L    V + DT G  + 
Sbjct: 14  IAFFGRRNAGKSSFFNAIAGQKLSLTSETLGTTTDPVRKSMEILPLGPVLLIDTPGFDDE 73

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
            ++  +  E  K    E + A L L  K+  S K++
Sbjct: 74  GELGSMRVERTKEVLRETDIALLFLPAKDFLSAKDV 109


>gi|189463402|ref|ZP_03012187.1| hypothetical protein BACCOP_04121 [Bacteroides coprocola DSM 17136]
 gi|189429831|gb|EDU98815.1| hypothetical protein BACCOP_04121 [Bacteroides coprocola DSM 17136]
          Length = 418

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 22/123 (17%)

Query: 192 VLNDILFLKN-----DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-- 244
           +LN +  LK      D      +   G +IR    + ++G++N GKS+L N LAK +V  
Sbjct: 188 ILNRMALLKQRLAEIDTQKSTQRKNRGRLIR----VALVGYTNVGKSTLMNLLAKSEVFA 243

Query: 245 --AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300
              +   +  T R V+     +E     +SDT G IR+   D+V  +  K T  EV  AD
Sbjct: 244 ENKLFATLDTTVRKVI-----IENLPFLLSDTVGFIRKLPTDLV--DSFKSTLDEVREAD 296

Query: 301 LIL 303
           L+L
Sbjct: 297 LLL 299


>gi|116329485|ref|YP_799205.1| GTPase EngB [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116329911|ref|YP_799629.1| GTPase EngB [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|122282316|sp|Q04W49|ENGB_LEPBJ RecName: Full=Probable GTP-binding protein EngB
 gi|122282735|sp|Q04XC3|ENGB_LEPBL RecName: Full=Probable GTP-binding protein EngB
 gi|116122229|gb|ABJ80272.1| GTPase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116123600|gb|ABJ74871.1| GTPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 221

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 11/77 (14%)

Query: 202 DISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTT----- 254
           D+    S G+  +I   G  +I   G SNAGKSSL NA L +K +A V+  PG T     
Sbjct: 15  DVEFKASYGEANQIPSQGIPQIAFAGRSNAGKSSLLNAILERKSLAKVSSTPGKTKLLNF 74

Query: 255 ----RDVLTIDLDLEGY 267
               R +  +DL   GY
Sbjct: 75  FFVNRSIYLVDLPGFGY 91


>gi|315145751|gb|EFT89767.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX2141]
          Length = 369

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 159 EKYREGRDVYVVGVTNVGKSTLINQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 218

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 219 I---DTPGI 224


>gi|301060715|ref|ZP_07201530.1| ferrous iron transport protein B [delta proteobacterium NaphS2]
 gi|300445112|gb|EFK09062.1| ferrous iron transport protein B [delta proteobacterium NaphS2]
          Length = 823

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           + R+   I + G  N GKS++FNAL  A + VA   + PG T + +    + +G  V++ 
Sbjct: 1   MTRDSVLITLAGQPNCGKSTVFNALTGASQHVA---NYPGVTVEKMAGRYNYDGLKVEVV 57

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           D  G         +E + R FL  E   +++
Sbjct: 58  DLPGTYSLTSYSLEERVTRGFLLAEKPSIVV 88


>gi|302830428|ref|XP_002946780.1| hypothetical protein VOLCADRAFT_56252 [Volvox carteri f.
           nagariensis]
 gi|300267824|gb|EFJ52006.1| hypothetical protein VOLCADRAFT_56252 [Volvox carteri f.
           nagariensis]
          Length = 480

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGT--TRDVLTIDLDLEGYLVKISDTAGI 277
           ++G  N GKS+LFN L ++ VA+V D P +  TRD       L   + + +DT+G+
Sbjct: 1   LVGRPNVGKSALFNRLLRRRVALVYDTPNSHVTRDYQEGRAQLGDLVFRAADTSGL 56



 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           K+ I+G  NAGKS+L N L  ++ A+    PG TRD +          V++ DTAG
Sbjct: 200 KLGIMGLPNAGKSTLLNRLLGEERALTGPEPGLTRDAVRAMWMYGNQPVELIDTAG 255


>gi|296171792|ref|ZP_06852920.1| GTP-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295893963|gb|EFG73730.1| GTP-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 484

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 29/188 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           +   I I+G++NAGKSSL NAL       +D    T  P T R     D    G    I+
Sbjct: 255 DAPSIAIVGYTNAGKSSLLNALTGAGVLVQDALFATLEPTTRRAEFGADSKRAGAYT-IT 313

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISFPKNIDF- 322
           DT G          E  + T  EV +ADL+L          L +IN+ + +      D  
Sbjct: 314 DTVGFVRHLPTQLVEAFRSTLEEVVDADLLLHVVDGSDANPLAQINAVRAVVSDVVADHH 373

Query: 323 ------IFIGTKSDLYSTYT-EEYDH------LISSFTGEGLEELINKIKSILSNKFKKL 369
                 + +  K D  S  T  +  H       +S+ TG+G++ L  ++  +       +
Sbjct: 374 GDPPPELLVVNKIDAASDLTLAKLRHALPGAVFVSARTGDGIDALRTRMAELAVPADTAV 433

Query: 370 PFSIPSHK 377
              IP H+
Sbjct: 434 DVVIPYHR 441


>gi|289550966|ref|YP_003471870.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180498|gb|ADC87743.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus
           lugdunensis HKU09-01]
          Length = 294

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LA+K++A   + PG T+    I +   G ++++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLARKNIAQTGNKPGVTKQQQWIKV---GKVLQLLDTPGI 175


>gi|224025930|ref|ZP_03644296.1| hypothetical protein BACCOPRO_02676 [Bacteroides coprophilus DSM
           18228]
 gi|224019166|gb|EEF77164.1| hypothetical protein BACCOPRO_02676 [Bacteroides coprophilus DSM
           18228]
          Length = 418

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 22/123 (17%)

Query: 192 VLNDILFLKN-----DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-- 244
           +LN +  LK      D      +   G +IR    + ++G++N GKS+L N +AK DV  
Sbjct: 188 ILNRMALLKQRLADIDTQKSTQRKNRGRMIR----VALVGYTNVGKSTLMNLMAKSDVFA 243

Query: 245 --AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300
              +   +  T R V+     +E     +SDT G IR+   D+V  +  K T  EV  AD
Sbjct: 244 ENKLFATLDTTVRKVI-----IENLPFLLSDTVGFIRKLPTDLV--DSFKSTLDEVREAD 296

Query: 301 LIL 303
           L++
Sbjct: 297 LLV 299


>gi|222151078|ref|YP_002560232.1| hypothetical protein MCCL_0829 [Macrococcus caseolyticus JCSC5402]
 gi|222120201|dbj|BAH17536.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 290

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK +A   ++PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINRLAKKSIAKTGNMPGVTKKQQWIKV---GKTLELLDTPGI 175


>gi|86138349|ref|ZP_01056923.1| GTP-binding protein HflX [Roseobacter sp. MED193]
 gi|85824874|gb|EAQ45075.1| GTP-binding protein HflX [Roseobacter sp. MED193]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 25/161 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN L   +V +  D+   T D     +++ +G  + +SDT G    
Sbjct: 205 VALVGYTNAGKSTLFNRLTGAEV-MAKDMLFATLDPTMRRVEMPDGPEIILSDTVGFISD 263

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
                    + T  EV  AD+IL +++I+ +   +   ++  I      D      E ++
Sbjct: 264 LPTELVAAFRATLEEVLAADVILHVRDISHEDSQNQANDVAAILSTLGVDETRAQIEVWN 323

Query: 341 -----------------------HLISSFTGEGLEELINKI 358
                                  H IS+ TGEG+E L++ +
Sbjct: 324 KLDQLPEDVAEARRQRAAREEGIHAISALTGEGIEALLDDV 364


>gi|57167682|ref|ZP_00366822.1| GTP-binding protein Era [Campylobacter coli RM2228]
 gi|305433189|ref|ZP_07402345.1| GTP-binding protein Era [Campylobacter coli JV20]
 gi|57020804|gb|EAL57468.1| GTP-binding protein Era [Campylobacter coli RM2228]
 gi|304443890|gb|EFM36547.1| GTP-binding protein Era [Campylobacter coli JV20]
          Length = 291

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGYLVKISDT 274
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     T R +  I ++ E  ++ I DT
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMNGEDQIIFI-DT 58

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
            G+ E+   + +  I+     + + D+IL +  I
Sbjct: 59  PGLHESKATLNQFLIQSAIKSMGDCDVILFVASI 92


>gi|254839187|pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
           Methanococcus Jannaschii
 gi|254839188|pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
           Methanococcus Jannaschii
          Length = 188

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS++FNAL  ++V I  + PG T +    + +  G   K+ D  G+  
Sbjct: 8   YEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 66

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E I R ++  E  DL++
Sbjct: 67  LTANSIDEIIARDYIINEKPDLVV 90


>gi|163782126|ref|ZP_02177125.1| GTP-binding protein HflX [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882658|gb|EDP76163.1| GTP-binding protein HflX [Hydrogenivirga sp. 128-5-R1-1]
          Length = 379

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 34/168 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           K+ ++G++NAGKS+L   L  +     D+   T    T+   L+ DL      V  +DT 
Sbjct: 198 KVALVGYTNAGKSTLLRVLTGRESFSADMLFATLDTKTSSRFLSSDLK-----VLFTDTV 252

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID------------FI 323
           G  +       E  K T  EV  ADLIL + +++  + + +   +              I
Sbjct: 253 GFIKKLPTELIESFKATLEEVTEADLILHVVDVSDDRWLDYIHTVRDILKELSADGKPVI 312

Query: 324 FIGTKSDLYSTYTEEYDHL------------ISSFTGEGLEELINKIK 359
           ++  K+D      EE  HL            +S+    G++ELINKI+
Sbjct: 313 YVLNKADRIVDSEEEMRHLPHGAFVEGASVVVSAERRWGIDELINKIR 360


>gi|156095574|ref|XP_001613822.1| GTP-binding protein [Plasmodium vivax SaI-1]
 gi|148802696|gb|EDL44095.1| GTP-binding protein, putative [Plasmodium vivax]
          Length = 288

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 8/55 (14%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL-------DLEGY 267
           ++ I G SN GKSSL NAL   ++VA  +  PG TR +   +L       DL GY
Sbjct: 85  QVAIFGRSNVGKSSLINALLNNREVAQASKTPGRTRHLFIFNLLNHLSIVDLPGY 139


>gi|15895038|ref|NP_348387.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum ATCC 824]
 gi|15024731|gb|AAK79727.1|AE007685_3 Predicted GTPase, YLQF B.subtilis ortholog [Clostridium
           acetobutylicum ATCC 824]
          Length = 283

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 9/90 (10%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           S K  LN++L  K  + +  ++G    IIR    ++++G  N GKSS  N +AK  VA V
Sbjct: 98  SIKPALNELL--KPKLDNMAAKGIQNYIIR----VMVVGIPNVGKSSFINKMAKNKVAKV 151

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            + PG T+    I  ++    +++ DT G+
Sbjct: 152 GNKPGVTKSKQWIKTNIG---IELMDTPGV 178


>gi|114330965|ref|YP_747187.1| small GTP-binding protein [Nitrosomonas eutropha C91]
 gi|114307979|gb|ABI59222.1| GTP-binding protein HflX [Nitrosomonas eutropha C91]
          Length = 377

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG-IRE 279
           + I+G++NAGKS+LFN L + D A   D    T D  T  L L E  L+ ISDT G IR+
Sbjct: 201 VSIVGYTNAGKSTLFNRLVRSD-AYAADKLFATLDTTTRRLFLPERGLIVISDTVGFIRD 259

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
               +     + T  E   ADL+L + +++S
Sbjct: 260 LPHTL-VAAFRATLEETIQADLLLHVVDVSS 289


>gi|330684968|gb|EGG96644.1| GTP-binding protein HflX [Staphylococcus epidermidis VCU121]
          Length = 413

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I ++G++NAGKSS FN LA +       +  T  D  T  + + EG+ + ISDT G  
Sbjct: 206 FQIALVGYTNAGKSSWFNVLANETTYEQNQLFATL-DPKTRQIQINEGFNLIISDTVGFI 264

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E + ADL+L
Sbjct: 265 QKLPTTLVAAFKSTLEEAKGADLLL 289


>gi|326693253|ref|ZP_08230258.1| GTPase YqeH [Leuconostoc argentinum KCTC 3773]
          Length = 379

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 10/79 (12%)

Query: 212 LGEI--IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDL 264
           L EI  +R G  + ++G +N GKS+L N + K     KD+   +  PGTT D + I L  
Sbjct: 169 LAEIDELRAGRDVFVVGVTNVGKSTLINQIIKTSTGVKDLITTSRFPGTTLDRIEIPLSD 228

Query: 265 EGYLVKISDTAGIRETDDI 283
             +L+   DT GI + D I
Sbjct: 229 GKHLI---DTPGIIKRDQI 244


>gi|325189060|emb|CCA23588.1| guanine nucleotidebinding proteinlike 3 putative [Albugo laibachii
           Nc14]
          Length = 595

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 85/171 (49%), Gaps = 23/171 (13%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + ++G+ N GKSS+ N+L +   A V+ I G T+ +  + +D +   +K+ D  
Sbjct: 244 IKTAITVGVIGYPNVGKSSIINSLKRSKAASVSSIAGHTKCLQQVQIDSK---IKLLDCP 300

Query: 276 GI----RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-IGTKSD 330
           GI     +TD ++ +  I    ++     + +LL++ +       P+ +  ++ + T+ +
Sbjct: 301 GIVFDDSDTDRLLLRNCINPESVQDPMQAVQVLLEQCD-------PEQLARVYKLHTRDN 353

Query: 331 ---LYSTYTEEYDHLISSFTGE----GLEELINKIKSILSNKFK-KLPFSI 373
              +++  + E+ HL++   G+    G+ +     K +L +  + K+PF +
Sbjct: 354 NAAIFTKNSHEFLHLVARMFGKLGKGGVPDRQAAAKMVLQDWNRGKIPFYV 404


>gi|313200864|ref|YP_004039522.1| GTP-binding protein hsr1-like protein [Methylovorus sp. MP688]
 gi|312440180|gb|ADQ84286.1| GTP-binding protein HSR1-related protein [Methylovorus sp. MP688]
          Length = 309

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++I+G  N GKS+L NAL  + +A V D P  T+     DL+ +   + I+DT G+
Sbjct: 109 RMMIMGIPNVGKSTLMNALLNRRIAKVGDEPAVTKSQQRFDLNDQ---MSITDTPGM 162


>gi|304315009|ref|YP_003850156.1| GTPase [Methanothermobacter marburgensis str. Marburg]
 gi|302588468|gb|ADL58843.1| predicted GTPase [Methanothermobacter marburgensis str. Marburg]
          Length = 336

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 101/230 (43%), Gaps = 49/230 (21%)

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
           S+L  +   +++ +   IE DLDF +                 F KN + +      +  
Sbjct: 121 SNLRREAFGRISSVVRRIEGDLDFLD-----------------FAKNKLRN------MPT 157

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +  + + +VI G  N GKS+L   L   +   V D P TT+ +    L+ +   +++ DT
Sbjct: 158 VDFDAFTVVIAGFPNVGKSTLLRTLTGAEPE-VADYPFTTKGIQIGHLERKWRKIQVIDT 216

Query: 275 AGI--RETDDIVEKEGIKRTFLEVEN-ADLILLLKEINS------KKEISFPKNIDFIF- 324
            G+  R  +D+   E   +  + +EN AD+IL + + +       + + S    I  +F 
Sbjct: 217 PGLLDRPVEDMNNIE--LQAMVALENIADVILFIFDASETCGYTLENQYSLYLGIKGVFD 274

Query: 325 -----IGTKSDLYST--YTEEYDHLI------SSFTGEGLEELINKIKSI 361
                +  K DL     Y EEY +++      S+F G G+ E++ K++ +
Sbjct: 275 TPIITVFNKMDLAENVKYLEEYINMVEEPLMVSAFQGRGVSEIVKKLEGL 324


>gi|300173398|ref|YP_003772564.1| GTP-binding protein era [Leuconostoc gasicomitatum LMG 18811]
 gi|299887777|emb|CBL91745.1| GTP-binding protein era [Leuconostoc gasicomitatum LMG 18811]
          Length = 303

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 29/163 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   V   DT GI +  
Sbjct: 11  VTIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDSAQVVFIDTPGIHKPQ 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIGTKS 329
           + +    +K  F  +  AD I  + +            IN  KEI   KN     +  K 
Sbjct: 71  NSLGDFMVKSAFSALHGADAIWFVVDASMPRGRGDDFIINRLKEI---KNTAIYLLINKV 127

Query: 330 DLY---------STYTEEYDHL-----ISSFTGEGLEELINKI 358
           DL          ++Y E+         IS+  G+ + EL++ +
Sbjct: 128 DLLAPKDLLNVIASYQEDAPEWAEVFPISAREGDNVSELLDNV 170


>gi|229008338|ref|ZP_04165815.1| hypothetical protein bmyco0002_51470 [Bacillus mycoides Rock1-4]
 gi|228752906|gb|EEM02458.1| hypothetical protein bmyco0002_51470 [Bacillus mycoides Rock1-4]
          Length = 425

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMQLPCGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLVAAFRSTLEEAREADVIL 280


>gi|224532989|ref|ZP_03673597.1| GTP-binding protein [Borrelia burgdorferi WI91-23]
 gi|224512106|gb|EEF82499.1| GTP-binding protein [Borrelia burgdorferi WI91-23]
 gi|312148166|gb|ADQ30825.1| GTP-binding protein [Borrelia burgdorferi JD1]
          Length = 279

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKSS+ N L+ K  A V + PG T+++  + ++ E   + + D  GI   
Sbjct: 119 KVLIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKINEE---INLFDMPGILWH 175

Query: 281 DDIVEKEGIKRTFLE------VENADLILLLKEI 308
           + + +    K   L+      V+N DL L L EI
Sbjct: 176 NLVDQSIAKKLAILDMIKNEIVDNTDLALYLLEI 209


>gi|121607078|ref|YP_994885.1| GTP-binding protein, HSR1-like [Verminephrobacter eiseniae EF01-2]
 gi|121551718|gb|ABM55867.1| GTP-binding protein, HSR1-related [Verminephrobacter eiseniae
           EF01-2]
          Length = 387

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAG- 276
           + I ++G++NAGKS+LFNAL K   A   D    T D  T  L L   G  V +SDT G 
Sbjct: 198 FNISLVGYTNAGKSTLFNALVKAG-AYAADQLFATLDTTTRQLYLANAGRSVSLSDTVGF 256

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
           IR+    +  +  + T  E  +ADL+L
Sbjct: 257 IRDLPHGL-IDAFEATLQEAVDADLLL 282


>gi|57639947|ref|YP_182425.1| GTP-binding protein [Thermococcus kodakarensis KOD1]
 gi|57158271|dbj|BAD84201.1| GTP-binding protein [Thermococcus kodakarensis KOD1]
          Length = 185

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           K+ I+G  N GKS+L NAL    V+ V ++PGTT+ V+
Sbjct: 3   KVAIIGAENVGKSTLMNALIGGKVSEVENLPGTTKGVI 40


>gi|114566205|ref|YP_753359.1| Fe2+ transport system protein B-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337140|gb|ABI67988.1| Fe2+ transport system protein B-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 601

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IVI+G+ N GKS+  N L+  ++ +V++ PGT+  +    + +    + I DT GI    
Sbjct: 3   IVIIGNPNVGKSAFLNRLSGSNI-LVSNYPGTSTTISANPVKIGKKEITIYDTPGIYSIF 61

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
              E++   R     E  DLIL
Sbjct: 62  SEGEEQKAIRDLFAREEVDLIL 83


>gi|307244269|ref|ZP_07526384.1| putative ferrous iron transport protein B [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492419|gb|EFM64457.1| putative ferrous iron transport protein B [Peptostreptococcus
           stomatis DSM 17678]
          Length = 673

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I +LG  N+GKS+LFN L   +   V + PG T +    +   +     I D  G     
Sbjct: 6   IALLGQPNSGKSTLFNGLTGSNQH-VGNWPGKTVEKKEGEFSYKDTNYTIVDLPGTYGLS 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
              E+E I R ++E  NADLI ++ +
Sbjct: 65  ANSEEEVITREYIETGNADLIAIMAD 90


>gi|229031986|ref|ZP_04187971.1| hypothetical protein bcere0028_40310 [Bacillus cereus AH1271]
 gi|228729341|gb|EEL80333.1| hypothetical protein bcere0028_40310 [Bacillus cereus AH1271]
          Length = 368

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 9/70 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R G  + ++G +N GKS+  N + K      ++V   +  PGTT D++ I LD E  
Sbjct: 155 EYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214

Query: 268 LVKISDTAGI 277
           L    DT GI
Sbjct: 215 LY---DTPGI 221


>gi|224534465|ref|ZP_03675041.1| GTP-binding protein Era [Borrelia spielmanii A14S]
 gi|224514142|gb|EEF84460.1| GTP-binding protein Era [Borrelia spielmanii A14S]
          Length = 290

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 16/135 (11%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGI---R 278
            ILG  + GKS+L N++    ++I++ IP TTR+ +  I  D  G ++ I DT G    +
Sbjct: 7   AILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDGRGQIIFI-DTPGFHLSK 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKN--IDFIFIGTKSD 330
           +  +I     I+ +  EVE   LIL + +I  K      K +   KN  + F+ +  K D
Sbjct: 66  KKFNIAMMNNIRSSIGEVE---LILYMIDIQDKPGEEENKMLEIIKNSKVKFLVLINKVD 122

Query: 331 LYSTYTEEYDHLISS 345
           L +T  +E    + +
Sbjct: 123 LKNTKIKEITQFLKA 137


>gi|166364450|ref|YP_001656723.1| GTP-binding protein Era [Microcystis aeruginosa NIES-843]
 gi|166086823|dbj|BAG01531.1| GTP-binding protein ERA homolog [Microcystis aeruginosa NIES-843]
          Length = 318

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           G+K   I I+G  N GKS+L N L  + +AI + I  TTR+ L   +  E   +   DT 
Sbjct: 23  GFKSGFIGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGIVTSERAQMIFVDTP 82

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI +    + K  +K     + + DL+L +
Sbjct: 83  GIHKPHHELGKVLVKNAENAINSVDLVLFV 112


>gi|4263509|gb|AAD15335.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269764|emb|CAB77764.1| hypothetical protein [Arabidopsis thaliana]
          Length = 375

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 15/89 (16%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV----LTIDLDL 264
           +G L   +R G    I+G+ N GKSSL N L K+ +      PG TR++    L  DLDL
Sbjct: 210 KGLLPRSVRAG----IIGYPNVGKSSLINRLLKRKICAAAPRPGVTREMKWVKLGKDLDL 265

Query: 265 ---EGYL-VKISDTAG---IRETDDIVEK 286
               G L ++I D A    +   DDI EK
Sbjct: 266 LDSPGMLPMRIDDQAAAIKLAICDDIGEK 294


>gi|15614925|ref|NP_243228.1| hypothetical protein BH2362 [Bacillus halodurans C-125]
 gi|10174982|dbj|BAB06081.1| BH2362 [Bacillus halodurans C-125]
          Length = 418

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I ++G++NAGKS+L N L   D +   D+   T D +T  + L  G  V +SDT G  
Sbjct: 202 FRIALVGYTNAGKSTLLNRLTASD-SYEEDLLFATLDPMTRKMRLPSGMEVILSDTVGFI 260

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
                      + T  EV++ADL+L
Sbjct: 261 NQLPTTLVAAFRSTLEEVKHADLLL 285


>gi|312190415|gb|ADQ43214.1| GTP binding protein [Eutrema parvulum]
          Length = 426

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 103/241 (42%), Gaps = 49/241 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  + ++IVTD P TTR  +        Y + + DT G+ E  
Sbjct: 131 VAVVGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILFDTPGVIEKK 190

Query: 282 ----DIVEKEGIKRTFLEVENADLILLL----------KEINSKKEISFPKNIDFIFIGT 327
               D +  + ++   +   NAD +++L          +E+  +      K    + +  
Sbjct: 191 MHRLDTMMMKNVRDAAI---NADCVVILVDACKTPAKIEEVLKEGLGDLEKRPPMLLVMN 247

Query: 328 KSDL------------YSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL            Y  +T + D +I  S+  G G+E++   I S       KLPF  
Sbjct: 248 KKDLIKPGEIAKKLEWYEKFT-DVDEVIPVSAKYGHGIEDVKEWILS-------KLPFGP 299

Query: 374 PSHKRHL-------YHLSQTVR---YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
           P + + +       + +++ VR   +++  +     C +++++   R A+    ++   V
Sbjct: 300 PYYPKDIVSEHPERFFVAEIVREKIFMQYRNEVPYACQVNVLSYKTRPAAKDFIQVEVVV 359

Query: 424 D 424
           D
Sbjct: 360 D 360


>gi|219852271|ref|YP_002466703.1| ferrous iron transport protein B [Methanosphaerula palustris E1-9c]
 gi|219546530|gb|ACL16980.1| ferrous iron transport protein B [Methanosphaerula palustris E1-9c]
          Length = 662

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            Y + + G++N GKS+ FN L   D  I+ + PG T +     L  +G+ +++ D  GI 
Sbjct: 22  AYTVALAGNANVGKSATFNQLTGVD-QIIGNWPGKTVERAEGLLVHKGHRIRVIDLPGIY 80

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
                  +E + R F+ +E+ D ++
Sbjct: 81  SFSTYSMEELVSREFIALEHPDAVV 105


>gi|152981217|ref|YP_001353061.1| GTP-binding protein Era [Janthinobacterium sp. Marseille]
 gi|151281294|gb|ABR89704.1| GTP-binding protein Era [Janthinobacterium sp. Marseille]
          Length = 300

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 8/121 (6%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R GY I I+G  N GKS+L N L    V+I +    TTR  +T    +E       DT G
Sbjct: 11  RCGY-IAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRITGIQTVEDAQFVYVDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLE-VENADLILLLKEINSKKEIS------FPKNIDFIFIGTKS 329
            +        + + RT    +  AD+IL + E  +  +         PKN+  I +  KS
Sbjct: 70  FQTRHSNALNKTLNRTVTNTLTAADVILYVIEAGTFGQADQQVLDLIPKNVPCILVINKS 129

Query: 330 D 330
           D
Sbjct: 130 D 130


>gi|308804091|ref|XP_003079358.1| Predicted GTP-binding protein MMR1 (ISS) [Ostreococcus tauri]
 gi|116057813|emb|CAL54016.1| Predicted GTP-binding protein MMR1 (ISS) [Ostreococcus tauri]
          Length = 1155

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I ++GH N GKSS+ N+L K+    V   PG T+ + T+ +D E  L    D+ G+
Sbjct: 931 IGLVGHPNVGKSSMVNSLMKRKAVSVKATPGHTKTLQTLIMDEETCLC---DSPGL 983


>gi|22328255|ref|NP_192188.2| GTP-binding family protein [Arabidopsis thaliana]
 gi|23297397|gb|AAN12960.1| unknown protein [Arabidopsis thaliana]
 gi|332656830|gb|AEE82230.1| GTP-binding protein [Arabidopsis thaliana]
          Length = 372

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 15/89 (16%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV----LTIDLDL 264
           +G L   +R G    I+G+ N GKSSL N L K+ +      PG TR++    L  DLDL
Sbjct: 207 KGLLPRSVRAG----IIGYPNVGKSSLINRLLKRKICAAAPRPGVTREMKWVKLGKDLDL 262

Query: 265 ---EGYL-VKISDTAG---IRETDDIVEK 286
               G L ++I D A    +   DDI EK
Sbjct: 263 LDSPGMLPMRIDDQAAAIKLAICDDIGEK 291


>gi|17644179|gb|AAL38787.1| unknown protein [Arabidopsis thaliana]
          Length = 372

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 15/89 (16%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV----LTIDLDL 264
           +G L   +R G    I+G+ N GKSSL N L K+ +      PG TR++    L  DLDL
Sbjct: 207 KGLLPRSVRAG----IIGYPNVGKSSLINRLLKRKICAAAPRPGVTREMKWVKLGKDLDL 262

Query: 265 ---EGYL-VKISDTAG---IRETDDIVEK 286
               G L ++I D A    +   DDI EK
Sbjct: 263 LDSPGMLPMRIDDQAAAIKLAICDDIGEK 291


>gi|72161224|ref|YP_288881.1| small GTP-binding protein domain-containing protein [Thermobifida
           fusca YX]
 gi|71914956|gb|AAZ54858.1| Small GTP-binding protein domain [Thermobifida fusca YX]
          Length = 493

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 29/177 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N +    V    A+   +  T R   T D    G L  +SDT G 
Sbjct: 274 VAIAGYTNAGKSSLLNRITGAGVLVEDALFATLDPTVRRARTPD----GRLFTLSDTVGF 329

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI-------SFPK--N 319
                    E  + T  EV  ADLIL +         ++I S +++         P+   
Sbjct: 330 VRHLPHQLVEAFRSTLEEVTEADLILHVVDGSHPDPEQQIASVRQVFAEIDATDIPELIV 389

Query: 320 IDFIFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           I+ I    ++ L    T +Y  +  +S+ TGEG+ EL+  I   L     ++   +P
Sbjct: 390 INKIDAADETQLRQLRT-KYPGMVEVSARTGEGIGELLQAIAEALPESEHEVTVLLP 445


>gi|86131593|ref|ZP_01050191.1| GTP-binding protein Era [Dokdonia donghaensis MED134]
 gi|85818038|gb|EAQ39206.1| GTP-binding protein Era [Dokdonia donghaensis MED134]
          Length = 294

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +    
Sbjct: 10  IIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQMILSDTPGIIKPAYE 69

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKK 312
           ++   +       E+AD++L + E+  K+
Sbjct: 70  LQASMMDFVKSAFEDADVLLYIVELGEKE 98


>gi|85119626|ref|XP_965677.1| nucleolar GTP-binding protein 2 [Neurospora crassa OR74A]
 gi|52783202|sp|Q7SHR8|NOG2_NEUCR RecName: Full=Nucleolar GTP-binding protein 2
 gi|28927489|gb|EAA36441.1| nucleolar GTP-binding protein 2 [Neurospora crassa OR74A]
          Length = 619

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GKSS+ NAL  K VA V  IPG T+    + L    YL+       
Sbjct: 323 RKQISVGLVGYPNVGKSSIINALRGKPVAKVAPIPGETKVWQYVTLMRRIYLIDCPGIVP 382

Query: 277 IRETDDIVEKEGIKRTFLEVENAD 300
             + D    ++ + R  + VEN D
Sbjct: 383 PNQND--TPQDLLLRGVVRVENVD 404


>gi|332292384|ref|YP_004430993.1| GTP-binding protein Era [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170470|gb|AEE19725.1| GTP-binding protein Era [Krokinobacter diaphorus 4H-3-7-5]
          Length = 294

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +    
Sbjct: 10  IIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQMLLSDTPGIIKPAYE 69

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKK 312
           ++   +       E+AD++L + E+  K+
Sbjct: 70  LQASMMDFVKSAFEDADVLLYIVELGEKE 98


>gi|328865389|gb|EGG13775.1| hypothetical protein DFA_11536 [Dictyostelium fasciculatum]
          Length = 453

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 9/66 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---------LTIDLDLEGYLVKI 271
           +I  LG SN GKSSL NAL    +A V+  PG T+ V         + +DL   GY    
Sbjct: 230 QIAFLGRSNVGKSSLLNALLGNQLANVSKTPGCTQSVNFYSIWDKLMLVDLPGYGYSKVS 289

Query: 272 SDTAGI 277
            D A +
Sbjct: 290 KDKAAV 295


>gi|259507801|ref|ZP_05750701.1| GTP-binding protein Era [Corynebacterium efficiens YS-314]
 gi|259164594|gb|EEW49148.1| GTP-binding protein Era [Corynebacterium efficiens YS-314]
          Length = 305

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  E   + + DT G
Sbjct: 11  RSGF-VSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGLVHREDAQIIVVDTPG 69

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ +   E +K T+ +V+
Sbjct: 70  LHRPRTLLGERLNESVKDTYSDVD 93


>gi|237809127|ref|YP_002893567.1| GTP-binding proten HflX [Tolumonas auensis DSM 9187]
 gi|237501388|gb|ACQ93981.1| GTP-binding proten HflX [Tolumonas auensis DSM 9187]
          Length = 429

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 8/118 (6%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVT 248
           +E +++IL     +     QG+   + RN   +V ++G++NAGKS+LFN + +  V    
Sbjct: 168 REKISNILGRLEKVEKQREQGRRARV-RNAIPVVSLVGYTNAGKSTLFNRMTQSKVYAAD 226

Query: 249 DIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL 303
            +  T    L  I+L+  G +V ++DT G IR    D+V     K T  E   ADL L
Sbjct: 227 QLFATLDPTLRRIELERLGPVV-LADTVGFIRHLPHDLV--AAFKATLQETREADLQL 281


>gi|213691733|ref|YP_002322319.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523194|gb|ACJ51941.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457827|dbj|BAJ68448.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 501

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 28/165 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G++NAGKSSL N L       + A+   +    R   T D     Y+    DT G 
Sbjct: 283 VAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRAKTRDGRAYAYV----DTVGF 338

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL------------LLKEINSK-KEISFPKNIDFIF 324
                    E  K T  EV  AD+IL             +  +N    +I    +I  I 
Sbjct: 339 VRRLPTQLVEAFKSTLEEVAEADVILHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRIL 398

Query: 325 IGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSIL 362
           +  K+D     T E          ++S++TGEGL+EL   ++S+L
Sbjct: 399 VFNKADQADETTRERLAALQPDAFIVSAYTGEGLDELRTAVESLL 443


>gi|229916145|ref|YP_002884791.1| GTP-binding proten HflX [Exiguobacterium sp. AT1b]
 gi|229467574|gb|ACQ69346.1| GTP-binding proten HflX [Exiguobacterium sp. AT1b]
          Length = 415

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 8/88 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG-I 277
           +++ ++G++NAGKS++FN L   D     ++  T  D LT +L+L  G  V I+DT G I
Sbjct: 201 FQVALVGYTNAGKSTIFNRLTDADTYEQDELFATL-DPLTRELELPRGGKVLITDTVGFI 259

Query: 278 RETDDIVEK--EGIKRTFLEVENADLIL 303
           R   D+  K     + T  EV  ADLIL
Sbjct: 260 R---DLPTKLVAAFRSTLEEVVGADLIL 284


>gi|126663305|ref|ZP_01734303.1| putative GTP-binding protein [Flavobacteria bacterium BAL38]
 gi|126624963|gb|EAZ95653.1| putative GTP-binding protein [Flavobacteria bacterium BAL38]
          Length = 294

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + GY + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ + + V  SDT G
Sbjct: 4   KAGY-VNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGDDFQVLFSDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           I +    ++   +       E+AD+++ + EI  K+
Sbjct: 63  IIKPAYELQNSMMDFVKSAFEDADILVYMVEIGEKE 98


>gi|117618716|ref|YP_857251.1| ferrous iron transport protein B [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560123|gb|ABK37071.1| ferrous iron transport protein B [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 757

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 13/91 (14%)

Query: 220 YKIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           Y +V +G+ N+GK+SLFNAL  A++ V    +  G T D    +   +G+  K+ D  GI
Sbjct: 3   YSLVTVGNPNSGKTSLFNALTGARQQVG---NWSGVTVDKKMGEFSAQGHDYKLMDLPGI 59

Query: 278 RETDDIVEKEG-----IKRTFLEVENADLIL 303
                +  +EG     I   F+E +  DL+L
Sbjct: 60  YS---LANQEGSLDEQIASRFVEGQQPDLLL 87


>gi|15594988|ref|NP_212777.1| ribosomal biogenesis GTPase [Borrelia burgdorferi B31]
 gi|216264619|ref|ZP_03436611.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia burgdorferi
           156a]
 gi|221217948|ref|ZP_03589415.1| GTP-binding protein [Borrelia burgdorferi 72a]
 gi|223889457|ref|ZP_03624043.1| GTP-binding protein [Borrelia burgdorferi 64b]
 gi|225548890|ref|ZP_03769867.1| GTP-binding protein [Borrelia burgdorferi 94a]
 gi|225549956|ref|ZP_03770917.1| GTP-binding protein [Borrelia burgdorferi 118a]
 gi|226320358|ref|ZP_03795927.1| GTP-binding protein [Borrelia burgdorferi 29805]
 gi|226321341|ref|ZP_03796868.1| GTP-binding protein [Borrelia burgdorferi Bol26]
 gi|2688581|gb|AAC67000.1| conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|215981092|gb|EEC21899.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia burgdorferi
           156a]
 gi|221192254|gb|EEE18474.1| GTP-binding protein [Borrelia burgdorferi 72a]
 gi|223885143|gb|EEF56247.1| GTP-binding protein [Borrelia burgdorferi 64b]
 gi|225369415|gb|EEG98867.1| GTP-binding protein [Borrelia burgdorferi 118a]
 gi|225370493|gb|EEG99929.1| GTP-binding protein [Borrelia burgdorferi 94a]
 gi|226233137|gb|EEH31889.1| GTP-binding protein [Borrelia burgdorferi Bol26]
 gi|226234221|gb|EEH32933.1| GTP-binding protein [Borrelia burgdorferi 29805]
 gi|312149531|gb|ADQ29602.1| GTP-binding protein [Borrelia burgdorferi N40]
          Length = 279

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKSS+ N L+ K  A V + PG T+++  + ++ E   + + D  GI   
Sbjct: 119 KVLIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKINEE---INLFDMPGILWH 175

Query: 281 DDIVEKEGIKRTFLE------VENADLILLLKEI 308
           + + +    K   L+      V+N DL L L EI
Sbjct: 176 NLVDQSIAKKLAILDMIKNEIVDNTDLALYLLEI 209


>gi|167038408|ref|YP_001665986.1| ferrous iron transport protein B [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116812|ref|YP_004186971.1| ferrous iron transport protein B [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166857242|gb|ABY95650.1| ferrous iron transport protein B [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929903|gb|ADV80588.1| ferrous iron transport protein B [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 656

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G++N GKS +FN L      I+ + PG T +     L  +G  +KI D  GI    
Sbjct: 7   IALAGNANVGKSVIFNQLTGLT-QIIGNWPGKTVERAEGVLRFKGRTIKIVDLPGIYSLS 65

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
              ++E + R F+  E  D+++
Sbjct: 66  AYSQEEIVSREFIAFEKPDVVI 87


>gi|323701269|ref|ZP_08112944.1| small GTP-binding protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533871|gb|EGB23735.1| small GTP-binding protein [Desulfotomaculum nigrificans DSM 574]
          Length = 641

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  IV++G+ N GKS +FN L  + V  V + PGTT +V+      +     ++DT GI 
Sbjct: 7   GKNIVLVGNPNVGKSVVFNYLTGRYVD-VANFPGTTTNVICGRFGCD----AVTDTPGIY 61

Query: 279 ETDDIVEKEGIKR 291
                 E+E I R
Sbjct: 62  GISSFNEEEKIAR 74


>gi|291302081|ref|YP_003513359.1| GTP-binding protein Era [Stackebrandtia nassauensis DSM 44728]
 gi|290571301|gb|ADD44266.1| GTP-binding protein Era [Stackebrandtia nassauensis DSM 44728]
          Length = 298

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 16/121 (13%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  NAGKS+L NA+    +AI ++ P TTR V+   L      + + DT G  +  +++
Sbjct: 13  VGRPNAGKSTLTNAIIGSKIAITSNRPQTTRHVVRGILHRPDSQLILVDTPGYHKPKNVL 72

Query: 285 EK---EGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
            K   E ++ T+ EV   D+I L    N K         +EI+  K    + + TK DL 
Sbjct: 73  GKRLNEEVRETWSEV---DVIGLCIPANEKIGPGDRYITREITAQKA-KVVAVVTKIDLV 128

Query: 333 S 333
           S
Sbjct: 129 S 129


>gi|146284373|ref|YP_001174526.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas stutzeri
           A1501]
 gi|145572578|gb|ABP81684.1| GTP-binding protein EngB [Pseudomonas stutzeri A1501]
          Length = 227

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           N IL L    S  IS  K+ +   + G ++   G SNAGKSS  N L   ++A  +  PG
Sbjct: 16  NPILGLCQQASFMISAAKVDQCPADEGLEVAFAGRSNAGKSSALNTLTHANLARTSKTPG 75

Query: 253 TTRDVLTIDLDLEGYLVKI 271
            T+ +    LD E  LV +
Sbjct: 76  RTQLLNFFRLDDERRLVDL 94


>gi|169868596|ref|XP_001840869.1| hypothetical protein CC1G_03098 [Coprinopsis cinerea okayama7#130]
 gi|116498027|gb|EAU80922.1| hypothetical protein CC1G_03098 [Coprinopsis cinerea okayama7#130]
          Length = 284

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTD-IPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           IV+ G + AGKSSL N LA ++V   ++   G T   L   L +     +I DTAG+ E 
Sbjct: 36  IVVFGETGAGKSSLINMLAGREVTEASNSATGVTPSNLEFSLTIGNQEYRIWDTAGLNEA 95

Query: 281 D 281
           D
Sbjct: 96  D 96


>gi|322824910|gb|EFZ30166.1| GTP-binding protein, putative [Trypanosoma cruzi]
          Length = 636

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           +H++ G  GE      +I ++GH N GKSSL N +    V  V+  PG T+ + TI +  
Sbjct: 432 THVTCGTGGE--EAFLRIGVVGHPNVGKSSLLNCIRGTKVVSVSATPGHTKHLQTIPIPS 489

Query: 265 EGYLVKISDTAGI 277
           E   V + D+ G+
Sbjct: 490 EH--VVLIDSPGL 500


>gi|289706438|ref|ZP_06502796.1| GTP-binding protein HflX [Micrococcus luteus SK58]
 gi|289556933|gb|EFD50266.1| GTP-binding protein HflX [Micrococcus luteus SK58]
          Length = 444

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 27/176 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L    V    A+   +  T R  +T D    G    +SDT G 
Sbjct: 222 VAIAGYTNAGKSSLLNRLTHAGVLVENALFATLDPTVRKAMTPD----GIGYTLSDTVGF 277

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI----------DFIF 324
                    E  + T  EV +AD+IL +      + + +I+  +++          + I 
Sbjct: 278 VRNLPTQLVEAFRSTLEEVADADVILHVVDGSHPDPEGQIAAVRSVFAEVDAHRIPEIIV 337

Query: 325 IGTKSDLYSTYT------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +                 E +  ++S+ TGEG++EL   I + +     +L   +P
Sbjct: 338 LNKADAADPAVVARIRSKEPHAVVVSARTGEGIDELERAIAATIPRPDVRLELLVP 393


>gi|290579863|ref|YP_003484255.1| putative GTP-binding protein [Streptococcus mutans NN2025]
 gi|254996762|dbj|BAH87363.1| putative GTP-binding protein [Streptococcus mutans NN2025]
          Length = 368

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R G  + ++G +N GKS+L NA+ +     K++   +  PGTT D + I L+   Y 
Sbjct: 158 EELRQGRDVYVVGVTNVGKSTLINAIIQEITGDKNIITTSRFPGTTLDKIEIPLNDGSY- 216

Query: 269 VKISDTAGI 277
             I DT GI
Sbjct: 217 --IFDTPGI 223


>gi|212224625|ref|YP_002307861.1| HflX-related GTP-binding protein [Thermococcus onnurineus NA1]
 gi|212009582|gb|ACJ16964.1| HflX-related GTP-binding protein [Thermococcus onnurineus NA1]
          Length = 429

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G++NAGKS+L N LA +++    D   TT D  T    L G  V ++DT G  +  
Sbjct: 189 LALAGYTNAGKSTLLNTLAGEEIE-ARDQMFTTLDTTTRRFKLGGKRVLVTDTVGFIDGL 247

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
                E    T  E+  AD++LL+ +++
Sbjct: 248 PPFIVEAFHSTLEEIVKADIVLLVLDVS 275


>gi|59712693|ref|YP_205469.1| GTP-binding protein Era [Vibrio fischeri ES114]
 gi|59480794|gb|AAW86581.1| membrane-associated, 16S rRNA-binding GTPase [Vibrio fischeri
           ES114]
          Length = 321

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 202 DISSHISQGKLGEIIRNGYK--IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VL 258
           D+ ++ +  K  E+  N +   I I+G  N GKS+L N +  + ++I +  P TTR  ++
Sbjct: 8   DLDAYFASEKKSEVSDNQHCGFIAIVGRPNVGKSTLLNQILGQKISITSRKPQTTRHRIM 67

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            +D D + Y     DT G+     I EK  I R      N+ L
Sbjct: 68  GVDTDGD-YQAIYVDTPGLH----IEEKRAINRLMNRAANSSL 105


>gi|134300318|ref|YP_001113814.1| GTP-binding protein Era [Desulfotomaculum reducens MI-1]
 gi|134053018|gb|ABO50989.1| GTP-binding protein Era [Desulfotomaculum reducens MI-1]
          Length = 302

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L  + VAI++D P TTR  +   L      +   DT G
Sbjct: 9   RSGF-VALVGRPNVGKSTLLNKLVGQKVAIMSDKPQTTRHKIHSVLTRNDAQMVFLDTPG 67

Query: 277 I 277
           I
Sbjct: 68  I 68


>gi|261337358|ref|ZP_05965242.1| GTP-binding protein Era [Bifidobacterium gallicum DSM 20093]
 gi|270277736|gb|EFA23590.1| GTP-binding protein Era [Bifidobacterium gallicum DSM 20093]
          Length = 337

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L      + + DT
Sbjct: 26  VTRSGF-VAVVGRPNVGKSTLINALLGTQIAIASSRPETTRKAIRGILTTNDAQMVLVDT 84

Query: 275 AGI 277
            GI
Sbjct: 85  PGI 87


>gi|218288620|ref|ZP_03492897.1| GTP-binding protein Era [Alicyclobacillus acidocaldarius LAA1]
 gi|218241277|gb|EED08452.1| GTP-binding protein Era [Alicyclobacillus acidocaldarius LAA1]
          Length = 298

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NAL  + VAI+++ P TTR+ +      E   +   DT GI +  
Sbjct: 8   VALIGRPNVGKSTLLNALVGQKVAIMSNRPQTTRNRIRGVRTTETSQMIFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
             + +  +      +   D+I+L+ + +S
Sbjct: 68  HRLGEYMVDAALKTLNEVDVIVLVVDASS 96


>gi|182418397|ref|ZP_02949691.1| GTP-binding protein Era [Clostridium butyricum 5521]
 gi|237666582|ref|ZP_04526567.1| GTP-binding protein Era [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377779|gb|EDT75323.1| GTP-binding protein Era [Clostridium butyricum 5521]
 gi|237657781|gb|EEP55336.1| GTP-binding protein Era [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 296

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ + I+G  N GKS+L N +  + ++IV++ P TTR+ +   L  + + +   DT
Sbjct: 1   MFKSGF-VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGDDFQMVFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +       ++ DL+L L
Sbjct: 60  PGIHKPKHKLGEFMVNSAKESTKDVDLVLFL 90


>gi|110679965|ref|YP_682972.1| GTP-binding protein HflX, putative [Roseobacter denitrificans OCh
           114]
 gi|109456081|gb|ABG32286.1| GTP-binding protein HflX, putative [Roseobacter denitrificans OCh
           114]
          Length = 432

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 29/178 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I ++G++NAGKS+LFN L   DV +  D+   T D     L L +G  V +SDT G    
Sbjct: 214 IALVGYTNAGKSTLFNHLTGADV-MAKDMLFATLDPTMRRLRLPDGPEVILSDTVGFISD 272

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------------IGT 327
                    + T  EV  AD+I  +++I+  +  +  K++  I              +  
Sbjct: 273 LPTELVAAFRATLEEVLAADVICHVRDISHPETEAQAKDVQDIMTTLGVEEDRPTFELWN 332

Query: 328 KSDLYSTYTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL S    E D +            IS+ +GEGL+ L+  +   L  K +    ++
Sbjct: 333 KLDLLSEG--EADAMRARADRDPSVFAISALSGEGLDGLLAAVTQTLQGKKRAATLTL 388


>gi|311031640|ref|ZP_07709730.1| GTP-binding protein Era [Bacillus sp. m3-13]
          Length = 305

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 25/172 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +  + +AI++D P TTR+ +      +   +   DT GI +  
Sbjct: 14  VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVFTQDDAQIVFIDTPGIHKPK 73

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------------KEISFP-----KNIDF 322
             +    +K     ++  DL+L +  IN+K              KE S P       ID 
Sbjct: 74  HKLGDFMMKVAQNTLKEVDLVLFM--INAKEGLGKGDEFIIEKLKETSTPVYLVINKIDE 131

Query: 323 IFIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
           +       L  TY   Y       IS+  G  +E L+++IK  L    +  P
Sbjct: 132 VHPDDLLPLMETYKALYPFKEIVPISALQGNNVEVLLDQIKKFLPEGPQYYP 183


>gi|254519807|ref|ZP_05131863.1| ferrous iron transporter B [Clostridium sp. 7_2_43FAA]
 gi|226913556|gb|EEH98757.1| ferrous iron transporter B [Clostridium sp. 7_2_43FAA]
          Length = 586

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279
           + +LG+ N GK++LFN L   +  I  +  G T D        EG+    +I D  GI  
Sbjct: 4   VALLGNPNVGKTTLFNYLTGSNQRI-GNWAGVTVD------KKEGFFGNTRIVDLPGIYA 56

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
            D    +E I + FLE ++ D+IL
Sbjct: 57  MDTYSNEEKISKAFLENDDVDVIL 80


>gi|218283666|ref|ZP_03489627.1| hypothetical protein EUBIFOR_02221 [Eubacterium biforme DSM 3989]
 gi|218215655|gb|EEC89193.1| hypothetical protein EUBIFOR_02221 [Eubacterium biforme DSM 3989]
          Length = 194

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 8/54 (14%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR--DVLTID-----LDLEGY 267
           +V++G SN GKSS  NAL  KK +A V + PG TR  +   ID     +D+ GY
Sbjct: 23  VVVVGRSNVGKSSFINALTNKKKLAYVGNTPGKTRLINFFKIDNTWMLVDVPGY 76


>gi|169829166|ref|YP_001699324.1| GTP-binding protein Era-like protein (Bex protein) [Lysinibacillus
           sphaericus C3-41]
 gi|254783660|sp|B1HTJ0|ERA_LYSSC RecName: Full=GTPase Era
 gi|168993654|gb|ACA41194.1| GTP-binding protein era-like protein (Bex protein) [Lysinibacillus
           sphaericus C3-41]
          Length = 305

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R+GYK   I I+G  N GKS+  N +  + +AI++D P TTR+ +   L      +   D
Sbjct: 5   RSGYKSGFISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTTDSQMIFID 64

Query: 274 TAGI 277
           T GI
Sbjct: 65  TPGI 68


>gi|163785530|ref|ZP_02180109.1| GTP-binding protein HflX [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879202|gb|EDP73127.1| GTP-binding protein HflX [Hydrogenivirga sp. 128-5-R1-1]
          Length = 234

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT--TRDVLTIDLDLEGYLVKISDTA 275
           N  K+ ++G++NAGKSSL N L K++  I   +  T  T+    +  D+   +V I+DT 
Sbjct: 55  NLLKVALVGYTNAGKSSLLNRLTKREAFISNQLFATLDTKTSYIVFPDINKKVV-ITDTV 113

Query: 276 GIRETDDIVEK--EGIKRTFLEVENADLIL 303
           G     D+ ++  +    T  EVE ADLIL
Sbjct: 114 GF--VKDMPKEIMDAFMATLEEVEEADLIL 141


>gi|153810738|ref|ZP_01963406.1| hypothetical protein RUMOBE_01122 [Ruminococcus obeum ATCC 29174]
 gi|149833134|gb|EDM88216.1| hypothetical protein RUMOBE_01122 [Ruminococcus obeum ATCC 29174]
          Length = 302

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKS+L N L  + +AI +  P TTR+ +      E   +   DT GI +  + 
Sbjct: 12  IIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTCEDGQIVFLDTPGIHKAKNK 71

Query: 284 VEKEGIKRTFLEVENADLILLLKE 307
           + +  ++     +++ D+IL L E
Sbjct: 72  LGEYMVQVAERTLKDVDVILWLVE 95


>gi|220928341|ref|YP_002505250.1| ribosome biogenesis GTP-binding protein YsxC [Clostridium
           cellulolyticum H10]
 gi|254783192|sp|B8I8N7|ENGB_CLOCE RecName: Full=Probable GTP-binding protein EngB
 gi|219998669|gb|ACL75270.1| GTP-binding protein HSR1-related [Clostridium cellulolyticum H10]
          Length = 204

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +I  +G SN GKSS+ N L  +K +A V   PG TR +   D++ E YLV
Sbjct: 25  EIAFVGRSNVGKSSIINTLVNRKSLARVGSTPGKTRQINFFDVNGEFYLV 74


>gi|110737138|dbj|BAF00519.1| hypothetical protein [Arabidopsis thaliana]
          Length = 377

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDI--------SSHISQGKLGEIIRNGYKIVILG 226
           +L  +++ D+  +   E+L+ + F   +I        +S  SQ   GE  R+   +  +G
Sbjct: 256 NLQKTDDPDIMIYGRDELLSRLQFEAQEIVKVRNSRAASVSSQSWTGEYQRDQAVVGFVG 315

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + N GKSS  NAL  +    VT  PG T+   T+
Sbjct: 316 YPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL 349


>gi|29832138|ref|NP_826772.1| GTP-binding protein Era [Streptomyces avermitilis MA-4680]
 gi|29609256|dbj|BAC73307.1| putative GTP-binding protein Era/ThdF family [Streptomyces
           avermitilis MA-4680]
          Length = 330

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 16/132 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   + G  NAGKS+L NAL  + VAI  + P TTR  +   +      + + DT G
Sbjct: 30  RAGFACFV-GRPNAGKSTLTNALVGQKVAITANQPQTTRHTVRGIVHRPDAQLILVDTPG 88

Query: 277 IRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIF 324
           + +   ++ +   + ++ T+ EV   D+I      N K         KE++  K    I 
Sbjct: 89  LHKPRTLLGERLNDIVRTTWAEV---DVIGFCLPANEKLGPGDRFIAKELASIKKTPKIA 145

Query: 325 IGTKSDLYSTYT 336
           I TK+DL    T
Sbjct: 146 IVTKTDLVDGKT 157


>gi|116670776|ref|YP_831709.1| GTP-binding protein Era [Arthrobacter sp. FB24]
 gi|116610885|gb|ABK03609.1| GTP-binding protein Era [Arthrobacter sp. FB24]
          Length = 318

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           R G+ I++ G  NAGKS+L NAL  K VAI +  P TTR
Sbjct: 16  RAGFSILV-GRPNAGKSTLTNALVGKKVAITSAKPQTTR 53


>gi|323697854|ref|ZP_08109766.1| ribosome biogenesis GTP-binding protein YsxC [Desulfovibrio sp.
           ND132]
 gi|323457786|gb|EGB13651.1| ribosome biogenesis GTP-binding protein YsxC [Desulfovibrio
           desulfuricans ND132]
          Length = 193

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +I + G SN GKSSL N LA +K +A ++  PG TR +    +D +GY
Sbjct: 24  QIALAGRSNVGKSSLVNRLAGRKALAKISSKPGKTRSLNYYRVDPDGY 71


>gi|322494744|emb|CBZ30047.1| putative GTPase protein [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 566

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 9/85 (10%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           G+ GE  R    + ++G+ N GKSS+ NAL +K V  V ++PG T     ++L  +   +
Sbjct: 295 GETGE--RKAIVVGVIGYPNVGKSSIINALKRKHVVGVGNMPGFTTGNTEVELRSD---I 349

Query: 270 KISDTAGI----RETDDIVEKEGIK 290
           ++ D  G+     ++ D+V +  I+
Sbjct: 350 RVMDCPGVVSPGEDSGDVVLRNAIR 374


>gi|254469267|ref|ZP_05082672.1| GTP-binding protein Era [Pseudovibrio sp. JE062]
 gi|211961102|gb|EEA96297.1| GTP-binding protein Era [Pseudovibrio sp. JE062]
          Length = 320

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 36/184 (19%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISD 273
           R G+ + ++G  NAGKS+L N L    V+IVT    TTR +   + I+ D +   V   D
Sbjct: 27  RAGF-VALIGAPNAGKSTLLNQLVGTKVSIVTHKVQTTRAIVRGVAIEDDSQVIFV---D 82

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL----KEINSKKE--------ISFPK--- 318
           T GI      +++  +   +   ++AD++ +L    K IN   E        I  PK   
Sbjct: 83  TPGIFRPKRRLDRAMVDTAWGGAKDADVVAVLIDAKKGINEAVERILNELEHIKLPKVLI 142

Query: 319 --NID------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
              ID       + +  K++ Y+ + + +  ++S+  G G ++++       S +  K P
Sbjct: 143 LNKIDITKREQLLELAAKANEYTKFDQTF--MVSAINGSGTKDIL----KYFSEQMPKGP 196

Query: 371 FSIP 374
           +  P
Sbjct: 197 WLYP 200


>gi|149758270|ref|XP_001489809.1| PREDICTED: similar to RAS and EF-hand domain containing, partial
           [Equus caballus]
          Length = 728

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 33/154 (21%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-------LDLEGYLV 269
           +  YKIV+ G +  GKSS    L K       +  G T   L +D       +D E  ++
Sbjct: 527 QKAYKIVLAGDAAVGKSSFLMRLCK------NEFRGNTSATLGVDFQMKTLIVDGERTVL 580

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFP 317
           ++ DTAG +E    + K   +R       AD +LLL ++  +K            E +  
Sbjct: 581 QLWDTAG-QERFRSIAKSYFRR-------ADGVLLLYDVTCEKSFLNVREWVDMIEDATH 632

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
             I  + +G K+DL  T   E    +  + GE L
Sbjct: 633 DPIPIMLVGNKADLRDTAAAEGQKCVPGYCGEKL 666


>gi|145589466|ref|YP_001156063.1| GTP-binding protein, HSR1-related [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047872|gb|ABP34499.1| GTP-binding protein HflX [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 387

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG-I 277
           + + ++G++NAGKS+LFNAL K       D    T D  +  + LEG   + +SDT G I
Sbjct: 173 FSVSLVGYTNAGKSTLFNALTKAGT-YAADQLFATLDTTSRRVHLEGVGSIVVSDTVGFI 231

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL 303
           R+    +  E  + T  E  +ADLIL
Sbjct: 232 RDLPHQL-VEAFRATLDETIHADLIL 256


>gi|83593020|ref|YP_426772.1| small GTP-binding protein domain-containing protein [Rhodospirillum
           rubrum ATCC 11170]
 gi|83575934|gb|ABC22485.1| Small GTP-binding protein domain [Rhodospirillum rubrum ATCC 11170]
          Length = 418

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 30/186 (16%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y +V L G++N+GKS+LFN L    V +  D+   T D     LDL  G  V +SDT
Sbjct: 188 RVPYPVVALVGYTNSGKSTLFNRLTAGGV-LAKDMLFATLDPTMRSLDLPSGRKVILSDT 246

Query: 275 AG-------------------IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-- 313
            G                   ++  D IV    I     + + AD+ ++L+E+   +   
Sbjct: 247 VGFVSDLPHELVAAFRATLEEVKAADVIVHVRDIAGIDSDAQKADVEVVLREMELDERVE 306

Query: 314 ---ISFPKNIDFIFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKK 368
              I     ID +    ++ L    T   D L  +S+ TG G + L+ +I + L+     
Sbjct: 307 SGLIEALNKIDLLDSERQAQLVED-TAGRDTLVPVSAVTGAGTDALLARIDARLAESRIV 365

Query: 369 LPFSIP 374
           L  SIP
Sbjct: 366 LGLSIP 371


>gi|322389857|ref|ZP_08063398.1| GTP-binding protein HflX [Streptococcus parasanguinis ATCC 903]
 gi|321143438|gb|EFX38875.1| GTP-binding protein HflX [Streptococcus parasanguinis ATCC 903]
          Length = 395

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 24/197 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T  + L G L V ++DT G  
Sbjct: 179 FKIGLIGYTNAGKSTIMNQLTSKSQYEADELFATL-DATTKSIHLTGNLQVTLTDTVGFI 237

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDFIFIG----- 326
           +          K T  E +N DL++ +        E + K  +S  K++D + I      
Sbjct: 238 QDLPTELVSSFKSTLEESKNVDLLVHVIDASDPNHEEHEKTVLSIMKDLDMLEIPRLTLY 297

Query: 327 TKSDLYSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKL--PFSI--PSHKRHL 380
            K+D  + +T       LIS+ +    E+L    +++L  K ++L  PF+I  P  K + 
Sbjct: 298 NKADKVADFTPTQTPFSLISARSETAREDL----QALLLEKLRELFVPFTIRVPFSKSYR 353

Query: 381 YHLSQTVRYLEMASLNE 397
            H  +TV  ++     E
Sbjct: 354 THDLETVAIIDQREFEE 370


>gi|297814025|ref|XP_002874896.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297320733|gb|EFH51155.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 372

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 15/89 (16%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV----LTIDLDL 264
           +G L   +R G    I+G+ N GKSSL N L K+ +      PG TR++    L  DLDL
Sbjct: 207 KGLLPRSVRAG----IIGYPNVGKSSLINRLLKRKICAAAPRPGVTREMKWVKLGKDLDL 262

Query: 265 ---EGYL-VKISDTAG---IRETDDIVEK 286
               G L ++I D A    +   DDI EK
Sbjct: 263 LDSPGMLPMRIDDQAAAIKLAICDDIGEK 291


>gi|292490850|ref|YP_003526289.1| GTP-binding protein Era [Nitrosococcus halophilus Nc4]
 gi|291579445|gb|ADE13902.1| GTP-binding protein Era [Nitrosococcus halophilus Nc4]
          Length = 303

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R GY + I+G  N GKSSL N +  + ++I    P TTR  +L I    +   + + DT 
Sbjct: 11  RCGY-VAIIGRPNVGKSSLLNCILGQKISITARRPQTTRHRILGIKTSPDAQAIYV-DTP 68

Query: 276 GIRETDDIVEKEGIKRTF-LEVENADLILLLKE 307
           G+++ +  +    + R     +E+ DLIL + E
Sbjct: 69  GLQDKERRLMNRYLNRAADSAIEDVDLILFIVE 101


>gi|239636993|ref|ZP_04677987.1| GTP-binding protein HflX [Staphylococcus warneri L37603]
 gi|239597343|gb|EEQ79846.1| GTP-binding protein HflX [Staphylococcus warneri L37603]
          Length = 413

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I ++G++NAGKSS FN LA +       +  T  D  T  + + EG+ + ISDT G  
Sbjct: 206 FQIALVGYTNAGKSSWFNVLANETTYEQNQLFATL-DPKTRQIQINEGFNLIISDTVGFI 264

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E + ADL+L
Sbjct: 265 QKLPTTLVAAFKSTLEEAKGADLLL 289


>gi|224533274|ref|ZP_03673868.1| GTP-binding protein [Borrelia burgdorferi CA-11.2a]
 gi|224513439|gb|EEF83796.1| GTP-binding protein [Borrelia burgdorferi CA-11.2a]
          Length = 279

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKSS+ N L+ K  A V + PG T+++  + ++ E   + + D  GI   
Sbjct: 119 KVLIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKINEE---INLFDMPGILWH 175

Query: 281 DDIVEKEGIKRTFLE------VENADLILLLKEI 308
           + + +    K   L+      V+N DL L L EI
Sbjct: 176 NLVDQSIAKKLAILDMIKNEIVDNTDLALYLLEI 209


>gi|114327788|ref|YP_744945.1| GTP-binding protein hflX [Granulibacter bethesdensis CGDNIH1]
 gi|114315962|gb|ABI62022.1| GTP-binding protein hflX [Granulibacter bethesdensis CGDNIH1]
          Length = 460

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 23/177 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G++NAGKS+LFNA+    V     +  T    +       G  V +SDT G     
Sbjct: 225 VALVGYTNAGKSTLFNAMTGSTVLAKDQLFATLDPTMRGLRLRSGRRVILSDTVGFISEL 284

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT--KSDLYSTYTEEY 339
                   + T  EV  AD+IL +++++     +   ++  +  G     DL + +    
Sbjct: 285 PTELIAAFRATLEEVAEADVILHVRDVSHPDTAAQRHDVQLVLDGMVRDHDLDADWRGRM 344

Query: 340 -------------DHL--------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                        +H+        +S+ TG GL+EL   I + ++       +S+P+
Sbjct: 345 IEVLNKADLLGGVEHVSVAPGSVAVSAITGAGLDELQAVIDARIAAGLTIAHYSVPA 401


>gi|50365082|ref|YP_053507.1| GTP-binding protein Era [Mesoplasma florum L1]
 gi|50363638|gb|AAT75623.1| GTP-binding protein, cell cycle control [Mesoplasma florum L1]
          Length = 301

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 22/157 (14%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I++G+ I I+G  N GKS+L N +    ++IVT+   TTR+ +   L  + Y +   DT 
Sbjct: 4   IKSGF-ISIVGRPNVGKSTLLNKIIGHKISIVTNKAQTTRNNIRGILTEKEYQLIFVDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIG 326
           GI  + + +++         ++  D+++ +   +            E+S   +I  I + 
Sbjct: 63  GIHTSKNQIDRFMNSSAMRSMKEVDVVVFMAPADETIGKNDLFILNELSKKNDIKKILVI 122

Query: 327 TKSDL------------YSTYTEEYDHLISSFTGEGL 351
           +K+D+            ++TY + +D +I + + E +
Sbjct: 123 SKADVVSKEKLFLKATEWNTYEQIFDEIIITSSTENI 159


>gi|300310324|ref|YP_003774416.1| GTP-binding protein [Herbaspirillum seropedicae SmR1]
 gi|300073109|gb|ADJ62508.1| GTP-binding protein [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++I+G  N GKS+L NAL KK VA V D P  T+    + L   G  + ++DT G+
Sbjct: 118 RMMIMGIPNVGKSTLMNALLKKRVAAVGDEPAVTKTQQRLYL---GNNMVLTDTPGM 171


>gi|237755349|ref|ZP_04583978.1| ferrous iron transport protein B [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692480|gb|EEP61459.1| ferrous iron transport protein B [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 708

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GK++L N +A  D+  V + PG T +     +  + Y+++  D  GI   
Sbjct: 6   KVALIGNPNVGKTALLNEIAGTDLK-VGNWPGVTIEKKEAIIIYKDYIIRFVDLPGIYSL 64

Query: 281 DDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEI 314
            +   +E I   +L  E  D+IL +L   N K+ +
Sbjct: 65  RNQTAEEKITVDYLLNEKPDVILNILDSTNLKRNL 99


>gi|225849321|ref|YP_002729485.1| GTP-binding protein Era [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643668|gb|ACN98718.1| GTP-binding protein Era [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 300

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 46/86 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +    ++IV+  P TTR  +     L    +   D  G+++  
Sbjct: 8   VALVGRPNVGKSTLLNNILGTKLSIVSPKPQTTRMRILGVKHLPDAQIIFLDAPGVQKGG 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
           D++ K  ++     +E+AD+I+++ E
Sbjct: 68  DLLSKSVLESAVASMEDADVIVMIIE 93


>gi|218249555|ref|YP_002375144.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia burgdorferi
           ZS7]
 gi|218164743|gb|ACK74804.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia burgdorferi
           ZS7]
          Length = 279

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKSS+ N L+ K  A V + PG T+++  + ++ E   + + D  GI   
Sbjct: 119 KVLIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKINEE---INLFDMPGILWH 175

Query: 281 DDIVEKEGIKRTFLE------VENADLILLLKEI 308
           + + +    K   L+      V+N DL L L EI
Sbjct: 176 NLVDQSIAKKLAILDMIKNEIVDNTDLALYLLEI 209


>gi|145492421|ref|XP_001432208.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399318|emb|CAK64811.1| unnamed protein product [Paramecium tetraurelia]
          Length = 634

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 9/109 (8%)

Query: 207 ISQGKLGE--IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           + +GKL +  +I    +I ++G++NAGKS L N + +K+V    D+   T    +  + L
Sbjct: 366 LQRGKLKQKKLIHTVPRIALIGYTNAGKSQLLNCILQKEVVESKDLLFQTLSTTSKQIRL 425

Query: 265 -EGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEIN 309
             G    + DT G   TD   D+V  E  K T  EV +AD++L +++I+
Sbjct: 426 ASGQKAIMLDTIGFI-TDLPHDLV--ESFKCTLEEVADADIVLHIRDIS 471


>gi|118586863|ref|ZP_01544297.1| GTP-binding protein Era [Oenococcus oeni ATCC BAA-1163]
 gi|118432695|gb|EAV39427.1| GTP-binding protein Era [Oenococcus oeni ATCC BAA-1163]
          Length = 309

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 3/101 (2%)

Query: 215 IIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           I+ N YK   + I+G  N GKS+L N +  + VAI++    TTR+ +      E   V  
Sbjct: 4   ILDNEYKSGFVAIIGRPNVGKSTLLNYIIGQKVAIISSKAQTTRNKIAGIYTTEEAQVVF 63

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
            DT GI +  + +++   K +F  +  AD +  + +   K+
Sbjct: 64  LDTPGIHKPYNSLDEYMEKASFGALNEADAVWFVVDATEKR 104


>gi|324994692|gb|EGC26605.1| GTP-binding protein HflX [Streptococcus sanguinis SK678]
          Length = 412

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  KD     ++  T  D  T +++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKDQYEADELFATL-DATTKNINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLV 282


>gi|294618386|ref|ZP_06697964.1| GTP-binding proten HflX [Enterococcus faecium E1679]
 gi|291595363|gb|EFF26678.1| GTP-binding proten HflX [Enterococcus faecium E1679]
          Length = 409

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 19/198 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I ++G++NAGKS++ N L + D     D    T D LT      EG+ + ++DT G  
Sbjct: 194 FQIGLIGYTNAGKSTILNLLTQAD-TYSKDQLFATLDPLTKRWRFAEGFEITVTDTVGFI 252

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIG 326
           +       +    T  E +N DL+L + + +S   I               K +  + + 
Sbjct: 253 QDLPTQLIDAFHSTLEESQNMDLLLHVVDASSPDRILQEQTVLKLMDELNMKEMSILTVY 312

Query: 327 TKSDLYS----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLY 381
            K+D       T T   + LIS+ T EG   LI  IK  L         S+PS++ + L 
Sbjct: 313 NKADQIDPAMFTPTLFPNVLISTQTKEGKMALIEAIKRQLMELMTPYTLSVPSNEGQKLS 372

Query: 382 HLSQTVRYLEMASLNEKD 399
            L +    L+ A + E +
Sbjct: 373 ELRRQTMVLDEAYMEETN 390


>gi|15615039|ref|NP_243342.1| hypothetical protein BH2476 [Bacillus halodurans C-125]
 gi|4514314|dbj|BAA75361.1| YlqF [Bacillus halodurans]
 gi|10175096|dbj|BAB06195.1| BH2476 [Bacillus halodurans C-125]
          Length = 284

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS+L N LA K +A V D PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMILGIPNVGKSTLINRLASKRIAKVGDRPGITKQQQWIKV---GKELELLDTPGI 175


>gi|28198564|ref|NP_778878.1| GTPase EngB [Xylella fastidiosa Temecula1]
 gi|32129522|sp|Q87DM6|ENGB_XYLFT RecName: Full=Probable GTP-binding protein EngB
 gi|28056648|gb|AAO28527.1| GTP-binding protein [Xylella fastidiosa Temecula1]
 gi|307579692|gb|ADN63661.1| ribosome biogenesis GTP-binding protein YsxC [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 203

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +G ++   G SNAGKSS+ N L +++ +A V+  PG T+ ++   +  + YLV +
Sbjct: 24  DGSEVAFAGRSNAGKSSVLNTLTRQNALARVSKTPGRTQQLVYFTVTPQRYLVDL 78


>gi|323491197|ref|ZP_08096383.1| GTPase Era [Vibrio brasiliensis LMG 20546]
 gi|323314565|gb|EGA67643.1| GTPase Era [Vibrio brasiliensis LMG 20546]
          Length = 325

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           SS+  Q    E    G+ + I+G  N GKS+L N +  + ++I +  P TTR  + + +D
Sbjct: 17  SSNTEQASSPENQHCGF-VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRI-MGVD 74

Query: 264 LEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            EG Y     DT G+     I EK  I R      N+ L
Sbjct: 75  TEGDYQAIYVDTPGLH----IEEKRAINRLMNRAANSSL 109


>gi|295102457|emb|CBL00002.1| GTPases [Faecalibacterium prausnitzii L2-6]
          Length = 214

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 27/179 (15%)

Query: 222 IVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G++N GKSSL NAL     A+ D+   T  P + + VL       G  V + DT G
Sbjct: 4   VSLVGYTNVGKSSLMNALCGPSVAEADMLFATLDPTSRKLVLP-----SGMAVLLVDTVG 58

Query: 277 I--RETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP-----------KNIDF 322
              R   ++V  E  K T  E   +D+I+ + +  ++++E                +I  
Sbjct: 59  FVSRLPHNLV--EAFKSTLEEAAWSDVIVRVADAGDAQREEQLAVTDEVLDGLDCADIPR 116

Query: 323 IFIGTKSDLYSTYTEEYDHLISSF-TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           + +  K D     + + D L++S  TG GL++L+ K+   LS++   +   +P  K  L
Sbjct: 117 LTVYNKCDKPGALSFDPDILLTSAKTGYGLDKLLAKLDETLSDRVHTIRILLPYDKLGL 175


>gi|55977157|gb|AAV68373.1| putative GTPase [Herminiimonas arsenicoxydans]
          Length = 316

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I+I+G  N GKS+L NAL KK VA V D P  T+    + L   G  + ++DT G+
Sbjct: 118 RIMIMGIPNVGKSTLMNALLKKRVAKVGDEPAVTKMQQRLYL---GNNIVLTDTPGM 171


>gi|86605904|ref|YP_474667.1| GTP-binding protein Era [Synechococcus sp. JA-3-3Ab]
 gi|86554446|gb|ABC99404.1| GTP-binding protein Era [Synechococcus sp. JA-3-3Ab]
          Length = 358

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           ++G  N GKS+L NAL  + +AI + +  TTR+ L   L L    +   DT GI
Sbjct: 71  LIGRPNVGKSTLMNALVGQKIAITSPVAQTTRNRLRGILSLPQAQIIWVDTPGI 124


>gi|327482756|gb|AEA86066.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas stutzeri
           DSM 4166]
          Length = 216

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           N IL L    S  IS  K+ +   + G ++   G SNAGKSS  N L   ++A  +  PG
Sbjct: 5   NPILGLCQQASFMISAAKVDQCPADEGLEVAFAGRSNAGKSSALNTLTHANLARTSKTPG 64

Query: 253 TTRDVLTIDLDLEGYLVKI 271
            T+ +    LD E  LV +
Sbjct: 65  RTQLLNFFRLDDERRLVDL 83


>gi|327296195|ref|XP_003232792.1| nucleolar GTP-binding protein [Trichophyton rubrum CBS 118892]
 gi|326465103|gb|EGD90556.1| nucleolar GTP-binding protein [Trichophyton rubrum CBS 118892]
          Length = 562

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 323 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLI---DCPG 379

Query: 277 -IRETDDIVEKEGIKRTFLEVENAD 300
            +  +++  E++ + R  + VEN +
Sbjct: 380 VVPPSNNATEEDILLRGVVRVENVE 404


>gi|218885478|ref|YP_002434799.1| ribosome biogenesis GTP-binding protein YsxC [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756432|gb|ACL07331.1| small GTP-binding protein [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 254

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +I + G SN GKSSL NALA +K +A ++  PG TR +    +  +G+ V
Sbjct: 24  QIALAGRSNVGKSSLVNALARRKALAKISATPGKTRSINYYRVKPDGFYV 73


>gi|212702990|ref|ZP_03311118.1| hypothetical protein DESPIG_01028 [Desulfovibrio piger ATCC 29098]
 gi|212673578|gb|EEB34061.1| hypothetical protein DESPIG_01028 [Desulfovibrio piger ATCC 29098]
          Length = 222

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDV 257
           ++ + G SN GKSSL NALA +K +A V+  PG TR +
Sbjct: 23  QVALAGRSNVGKSSLINALAVRKKLAKVSATPGKTRSI 60


>gi|218960394|ref|YP_001740169.1| GTPase [Candidatus Cloacamonas acidaminovorans]
 gi|167729051|emb|CAO79962.1| GTPase [Candidatus Cloacamonas acidaminovorans]
          Length = 447

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           KI ++G++NAGKS+LFN L    V +V D    T D  +  L L  G  V +SDT G   
Sbjct: 224 KICLVGYTNAGKSTLFNQLTNAGV-LVEDKLFATLDSTSRQLKLSTGNPVVLSDTVGFIS 282

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
                     K T +EV++A+L+L + +++ ++
Sbjct: 283 KLPHHLIASFKATLMEVQDANLLLHIVDVSDER 315


>gi|124008575|ref|ZP_01693267.1| GTP-binding protein Era [Microscilla marina ATCC 23134]
 gi|123985949|gb|EAY25806.1| GTP-binding protein Era [Microscilla marina ATCC 23134]
          Length = 302

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + ++I+T    TTR  +   ++ + + +  SDT GI +  
Sbjct: 19  VSIIGKPNVGKSTLMNQVIGEKLSIITSKAQTTRHRIMGVINGDDFQIVYSDTPGIIKPK 78

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
             + K  ++     +++AD+IL + +I  K
Sbjct: 79  YELHKSMMRFVNTSLDDADVILFVTDIFEK 108


>gi|13124224|sp|Q9PDE9|ENGB_XYLFA RecName: Full=Probable GTP-binding protein EngB
          Length = 203

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +G ++   G SNAGKSS+ N L +++ +A V+  PG T+ ++   +  + YLV +
Sbjct: 24  DGSEVAFAGRSNAGKSSVLNTLTRQNALARVSKTPGRTQQLVYFTVTPQRYLVDL 78


>gi|241082068|ref|XP_002409005.1| GTP-binding protein mmr1, putative [Ixodes scapularis]
 gi|215492591|gb|EEC02232.1| GTP-binding protein mmr1, putative [Ixodes scapularis]
          Length = 580

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            +GH N GKSSL NAL  + V  V+  PG T+   TI L      V++ D  G+
Sbjct: 354 FVGHPNVGKSSLLNALMGRKVVSVSRTPGHTKHFQTIFLTDN---VRLCDCPGL 404


>gi|260833530|ref|XP_002611710.1| hypothetical protein BRAFLDRAFT_63599 [Branchiostoma floridae]
 gi|229297081|gb|EEN67720.1| hypothetical protein BRAFLDRAFT_63599 [Branchiostoma floridae]
          Length = 580

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + I+G  N GKSS+ N+L +     V   PG T+ +  + +D     +K+ D+ 
Sbjct: 226 IKTTISVGIIGLPNVGKSSIINSLKRSRACAVGGTPGVTKTLQEVQIDKH---IKLIDSP 282

Query: 276 GIRETDDIVEKEGIKRTFLEVE 297
           GI  T  + +   I R  L+VE
Sbjct: 283 GIVMTSGLSDAALILRNCLKVE 304


>gi|217967468|ref|YP_002352974.1| GTP-binding proten HflX [Dictyoglomus turgidum DSM 6724]
 gi|217336567|gb|ACK42360.1| GTP-binding proten HflX [Dictyoglomus turgidum DSM 6724]
          Length = 405

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 25/200 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG-IR 278
           +I ++G++NAGKS+LFN L   +V    D+   T D     ++ +  + V ISDT G IR
Sbjct: 187 QIALVGYTNAGKSTLFNLLTGANVR-AEDLLFATLDPTVRKVNFKNNWEVLISDTVGFIR 245

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNI---------DFIFIG 326
              + +     + T  E+   DLIL + +I+ K   K+I   ++I           I + 
Sbjct: 246 NLPEEL-LTAFRATLEEIYYVDLILHVIDISDKDFRKQIEVVESILEDMGIEDKTIIRVY 304

Query: 327 TKSDLYST-----YTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            K DL S        +E D+     IS+  G G+E+L + I + L    ++   +IP +K
Sbjct: 305 NKIDLLSKEEVRYLKQELDYKPSVFISAKEGIGIEKLKDLIVNELLKGVRRYKINIPYNK 364

Query: 378 RHLYHLSQTVRYLEMASLNE 397
            +L+   +   Y+E  +  E
Sbjct: 365 FNLFQKYRGKLYIEEENYKE 384


>gi|169351079|ref|ZP_02868017.1| hypothetical protein CLOSPI_01858 [Clostridium spiroforme DSM 1552]
 gi|169292141|gb|EDS74274.1| hypothetical protein CLOSPI_01858 [Clostridium spiroforme DSM 1552]
          Length = 296

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISD 273
           + ++G+ + I+G  N GKS+L N + +  +AI++D+  TTR+ +  I  D +  ++   D
Sbjct: 1   MFKSGF-VSIVGRPNVGKSTLLNCILETKLAIMSDVAQTTRNTIQGIYTDDQAQII-FMD 58

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           T GI +  D +           +   DL+L L   N K
Sbjct: 59  TPGIHKPQDRLGTFMNSTALNSIFGVDLVLFLAPANEK 96


>gi|167745839|ref|ZP_02417966.1| hypothetical protein ANACAC_00533 [Anaerostipes caccae DSM 14662]
 gi|167654703|gb|EDR98832.1| hypothetical protein ANACAC_00533 [Anaerostipes caccae DSM 14662]
          Length = 727

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRE 279
           KI + G+ N+GK++LFNAL   +   V + PG T  V   +  L+GY  V I D  GI  
Sbjct: 4   KIALAGNPNSGKTTLFNALTGSN-QFVGNWPGVT--VEKKEGKLKGYKDVTIMDLPGIYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                 +E + R +L  E  D IL
Sbjct: 61  LSPYTLEEVVARNYLIGERPDAIL 84


>gi|197123177|ref|YP_002135128.1| ribosome biogenesis GTP-binding protein YsxC [Anaeromyxobacter sp.
           K]
 gi|220917966|ref|YP_002493270.1| GTP-binding protein HSR1-related [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|238689884|sp|B4UHX9|ENGB_ANASK RecName: Full=Probable GTP-binding protein EngB
 gi|254783182|sp|B8JEQ8|ENGB_ANAD2 RecName: Full=Probable GTP-binding protein EngB
 gi|196173026|gb|ACG73999.1| GTP-binding protein HSR1-related [Anaeromyxobacter sp. K]
 gi|219955820|gb|ACL66204.1| GTP-binding protein HSR1-related [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 216

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL 262
           +I  +G SN GKSS+ NALA +K +A V+  PG TR +   DL
Sbjct: 27  EIAFVGRSNVGKSSMLNALARRKGLARVSSTPGRTRALQFFDL 69


>gi|150026004|ref|YP_001296830.1| GTP-binding protein Era [Flavobacterium psychrophilum JIP02/86]
 gi|149772545|emb|CAL44028.1| GTP-binding protein Era [Flavobacterium psychrophilum JIP02/86]
          Length = 293

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 48/85 (56%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +    
Sbjct: 10  IIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQMILSDTPGIIKPAYE 69

Query: 284 VEKEGIKRTFLEVENADLILLLKEI 308
           +++  +       E+AD+++ + EI
Sbjct: 70  MQESMMNFVKSAFEDADVLVYMVEI 94


>gi|118587960|ref|ZP_01545370.1| GTP-binding protein Era [Stappia aggregata IAM 12614]
 gi|118439582|gb|EAV46213.1| GTP-binding protein Era [Stappia aggregata IAM 12614]
          Length = 335

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280
           I ++G  NAGKS+L N L    V+IVT    TTR ++  + +     LV I DT GI + 
Sbjct: 46  IALIGAPNAGKSTLINQLVGTKVSIVTHKVQTTRTIVRGVAMHGAAQLVFI-DTPGIFKP 104

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              +++  +   +    +ADLI LL  ++++K ++
Sbjct: 105 KRRLDRAMVDTAWGGARDADLIALL--VDARKGLT 137


>gi|83644633|ref|YP_433068.1| GTP-binding protein Era [Hahella chejuensis KCTC 2396]
 gi|83632676|gb|ABC28643.1| GTP-binding protein Era [Hahella chejuensis KCTC 2396]
          Length = 304

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 39/163 (23%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275
           R GY + I+G  N GKS+L N +  + ++I +  P TTR  + + +  EG Y     DT 
Sbjct: 12  RCGY-VAIVGRPNVGKSTLLNHILGQKISITSKKPQTTRHQI-LGIKTEGDYQAIYVDTP 69

Query: 276 GIRETDDIVEKEGIKRTFLE-----VENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
           G+ + D    K+ + R   +     +++AD+I+ +  ++ K+                  
Sbjct: 70  GLHQLD----KKALNRVLNKASSSAIKDADVIVFV--VDRKR------------------ 105

Query: 331 LYSTYTEEYDHLISSFTGEGLEEL--INKIKSILSNKFKKLPF 371
               +TEE D+++S         +  INK+   L NK   LPF
Sbjct: 106 ----WTEEDDYVLSKIAKVNRPRILVINKVDK-LENKDDLLPF 143


>gi|163942056|ref|YP_001646940.1| GTP-binding protein Era [Bacillus weihenstephanensis KBAB4]
 gi|163864253|gb|ABY45312.1| GTP-binding protein Era [Bacillus weihenstephanensis KBAB4]
          Length = 301

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   D
Sbjct: 3   RKGYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVVFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           T GI +    +    +K     ++  D++L +
Sbjct: 63  TPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFM 94


>gi|194336789|ref|YP_002018583.1| GTP-binding proten HflX [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309266|gb|ACF43966.1| GTP-binding proten HflX [Pelodictyon phaeoclathratiforme BU-1]
          Length = 434

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 18/181 (9%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           S++ +MQ  L+ +E M   L  L GQW    TH+        +    E       + V N
Sbjct: 123 SAQAKMQVELAQLEYM---LPRLSGQW----THLSKQKGGIGNKGPGETQIETDRRLVRN 175

Query: 195 DILFLKNDIS----SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
            I  LK  +      H +Q +  + +    ++ ++G++NAGKS+L NAL  +  A   + 
Sbjct: 176 RIALLKKKLREVSLQHDTQTRGRQTV---PRVSLVGYTNAGKSTLMNALCPEAEAFAENR 232

Query: 251 PGTTRDVLTIDLDLE-GYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
              T D  T  L+L    LV +SDT G IR+    +  E  K T  EV  AD +L + +I
Sbjct: 233 LFATLDTKTRRLELNINKLVLLSDTVGFIRKLPHTL-VESFKSTLDEVLQADFLLHVIDI 291

Query: 309 N 309
           +
Sbjct: 292 S 292


>gi|226944366|ref|YP_002799439.1| ferrous iron transport protein B [Azotobacter vinelandii DJ]
 gi|226719293|gb|ACO78464.1| ferrous iron transport protein B [Azotobacter vinelandii DJ]
          Length = 778

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GK++LFNAL       V + PG T +  + D    G   ++ D  G   
Sbjct: 5   YRIALVGNPNCGKTTLFNALTGAH-QRVGNWPGVTVERKSGDYPFRGLRFEVVDLPGTYS 63

Query: 280 TD----DIVEKEGIKRTFLEVENADLIL 303
            D    ++   E I R ++    ADL++
Sbjct: 64  LDVTDQEVSLDEKIARDYVHGNEADLVI 91


>gi|281203975|gb|EFA78171.1| Putative GTP-binding protein [Polysphondylium pallidum PN500]
          Length = 441

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 12/85 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-------DLEGYLVKISDT 274
           +  +G SN GKSS+ NA+ ++  A  +D PG T+ +   +L       DL GY    + +
Sbjct: 219 VAFIGRSNVGKSSIINAITQRGQAKTSDKPGFTQSINWYELGSTLYIVDLPGYGFAFAKS 278

Query: 275 AGIRETDD-----IVEKEGIKRTFL 294
             + + +      +  ++ +KR FL
Sbjct: 279 QKVDQWNQLTLEYLTTRKSLKRVFL 303


>gi|255323739|ref|ZP_05364867.1| GTP-binding protein Era [Corynebacterium tuberculostearicum SK141]
 gi|255299229|gb|EET78518.1| GTP-binding protein Era [Corynebacterium tuberculostearicum SK141]
          Length = 345

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  +   V + D
Sbjct: 45  EGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHTIRGLVHRDDAQVIVVD 103

Query: 274 TAGIRETDDIVEK---EGIKRTFLEVE 297
           T G+     ++ +   E +K T+ +V+
Sbjct: 104 TPGLHRPRTLLGERLNEVVKDTYADVD 130


>gi|184201224|ref|YP_001855431.1| putative GTP-binding protein HflX [Kocuria rhizophila DC2201]
 gi|183581454|dbj|BAG29925.1| putative GTP-binding protein HflX [Kocuria rhizophila DC2201]
          Length = 552

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 68/176 (38%), Gaps = 27/176 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L    V    A+   +  T R   T D    G    ++DT G 
Sbjct: 319 VAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVRKAQTPD----GIGYTLADTVGF 374

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL------------LLKEINSKKEISFPKNIDFIFI 325
             +      E  + T  EV +AD+I+             LK +          +I  I  
Sbjct: 375 VRSLPTQLVEAFRSTLEEVADADVIVHVVDASHPDPEGQLKAVRDVLTDVGANDIPEIVA 434

Query: 326 GTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             KSD+            E     +S+ TGEG+EEL   I + +      L   +P
Sbjct: 435 LNKSDIADPVVLARLRNHESPSVAVSARTGEGIEELRRMISAAIPRPNHDLDLLVP 490


>gi|167463783|ref|ZP_02328872.1| GTP-binding protein HSR1-related [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 293

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 8/110 (7%)

Query: 173 EADLDFSEEEDVQ----NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGH 227
           EA + F E+E ++    + +S   + DI+    +++SH  + ++ + I+    + +I+G 
Sbjct: 69  EAWVAFFEKETLKALPIDAASGFQVKDIIPRCKELASHKIEAQIQKGIKPRPVRALIVGI 128

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            N GKS+L N LA K +A   D PG T+    I +   G  + + DT GI
Sbjct: 129 PNVGKSTLINQLAGKKIAATGDRPGITKGQQWIKV---GKEMDLLDTPGI 175


>gi|254827779|ref|ZP_05232466.1| GTP-binding protein YqeH [Listeria monocytogenes FSL N3-165]
 gi|258600159|gb|EEW13484.1| GTP-binding protein YqeH [Listeria monocytogenes FSL N3-165]
          Length = 366

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     L
Sbjct: 155 EELRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVL 214

Query: 269 VKISDTAGI 277
           V   DT GI
Sbjct: 215 V---DTPGI 220


>gi|296166310|ref|ZP_06848747.1| GTP-binding protein Era [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898319|gb|EFG77888.1| GTP-binding protein Era [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 305

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    VAI +  P TTR  +   +  E + + + DT G
Sbjct: 11  RSGF-VCLVGRPNTGKSTLTNALVGTKVAITSTRPQTTRHTIRGIVHRENFQIILVDTPG 69

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ K   + ++ T+ EV+
Sbjct: 70  LHRPRTLLGKRLNDLVRDTYGEVD 93


>gi|261207325|ref|ZP_05922012.1| GTP-binding protein [Enterococcus faecium TC 6]
 gi|289566524|ref|ZP_06446947.1| GTP-binding protein HflX [Enterococcus faecium D344SRF]
 gi|294616545|ref|ZP_06696323.1| GTP-binding proten HflX [Enterococcus faecium E1636]
 gi|260078385|gb|EEW66089.1| GTP-binding protein [Enterococcus faecium TC 6]
 gi|289161678|gb|EFD09555.1| GTP-binding protein HflX [Enterococcus faecium D344SRF]
 gi|291590592|gb|EFF22323.1| GTP-binding proten HflX [Enterococcus faecium E1636]
          Length = 409

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 19/198 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I ++G++NAGKS++ N L + D     D    T D LT      EG+ + ++DT G  
Sbjct: 194 FQIGLIGYTNAGKSTILNLLTQAD-TYSKDQLFATLDPLTKRWRFAEGFEITVTDTVGFI 252

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIG 326
           +       +    T  E +N DL+L + + +S   I               K +  + + 
Sbjct: 253 QDLPTQLIDAFHSTLEESQNMDLLLHVVDASSPDRILQEQTVLKLMDELNMKEMSILTVY 312

Query: 327 TKSDLYS----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLY 381
            K+D       T T   + LIS+ T EG   LI  IK  L         S+PS++ + L 
Sbjct: 313 NKADQIDPAMFTPTLFPNVLISTQTKEGKMALIEAIKRQLMELMTPYTLSVPSNEGQKLS 372

Query: 382 HLSQTVRYLEMASLNEKD 399
            L +    L+ A + E +
Sbjct: 373 ELRRQTMVLDEAYMEETN 390


>gi|268530256|ref|XP_002630254.1| C. briggsae CBR-NST-1 protein [Caenorhabditis briggsae]
          Length = 554

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 38/62 (61%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L ++    V ++PG T+++  ++LD     +++ D+ 
Sbjct: 256 IKTSIRVGVVGFPNVGKSSVINSLKRRKACNVGNLPGITKELQEVELDKN---IRLIDSP 312

Query: 276 GI 277
           G+
Sbjct: 313 GV 314


>gi|17987569|ref|NP_540203.1| GTP-binding protein Era [Brucella melitensis bv. 1 str. 16M]
 gi|256044359|ref|ZP_05447263.1| GTP-binding protein Era [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563711|ref|ZP_05834197.1| GTP-binding protein era [Brucella melitensis bv. 1 str. 16M]
 gi|265990774|ref|ZP_06103331.1| GTP-binding protein era [Brucella melitensis bv. 1 str. Rev.1]
 gi|21263580|sp|Q8YG75|ERA_BRUME RecName: Full=GTPase Era
 gi|17983273|gb|AAL52467.1| gtp-binding protein era [Brucella melitensis bv. 1 str. 16M]
 gi|260153727|gb|EEW88819.1| GTP-binding protein era [Brucella melitensis bv. 1 str. 16M]
 gi|263001558|gb|EEZ14133.1| GTP-binding protein era [Brucella melitensis bv. 1 str. Rev.1]
          Length = 311

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR  L   + +EG   + + DT 
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTR-ALVRGIFIEGPAQIVLVDTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI      +++  +   +   ++AD+IL++
Sbjct: 76  GIFRPKRRLDRAMVTTAWGGAKDADIILVI 105


>gi|15643610|ref|NP_228656.1| GTP-binding protein Era [Thermotoga maritima MSB8]
 gi|8134443|sp|Q9WZV1|ERA_THEMA RecName: Full=GTPase Era
 gi|4981380|gb|AAD35929.1|AE001751_9 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 300

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDT 274
           I++G+ + + G  N GKS+  NA+  + V IV+D P TTR+ +  I  D +  ++ + DT
Sbjct: 3   IKSGF-VALAGKPNVGKSTFINAVMGRKVVIVSDKPQTTRNRINCIYTDKDSQIIFV-DT 60

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +K     ++  DL+L +
Sbjct: 61  PGIHKPLHRLGEYMVKAAVQALKGVDLVLFM 91


>gi|323490035|ref|ZP_08095256.1| GTPase YqeH [Planococcus donghaensis MPA1U2]
 gi|323396331|gb|EGA89156.1| GTPase YqeH [Planococcus donghaensis MPA1U2]
          Length = 367

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 21/106 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFN-----ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+  N     A  + DV   +  PGTT D++ I LD +  L
Sbjct: 155 EKYRKGKDVYVVGCTNVGKSTFINRVIKQATGQSDVITTSHFPGTTLDMIEIPLDDKRSL 214

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
               DT GI     +            ++ AD    LK+I  KKEI
Sbjct: 215 F---DTPGIINHHQLAH---------HLKTAD----LKQIMPKKEI 244


>gi|313637776|gb|EFS03129.1| ribosome biogenesis GTPase YqeH [Listeria seeligeri FSL S4-171]
          Length = 366

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     L
Sbjct: 155 EELRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVL 214

Query: 269 VKISDTAGI 277
           V   DT GI
Sbjct: 215 V---DTPGI 220


>gi|296535545|ref|ZP_06897727.1| GTP-binding protein HflX [Roseomonas cervicalis ATCC 49957]
 gi|296264131|gb|EFH10574.1| GTP-binding protein HflX [Roseomonas cervicalis ATCC 49957]
          Length = 393

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 31/182 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G++NAGKS+LFNAL    V     +  T    +       G  V +SDT G     
Sbjct: 171 VALVGYTNAGKSTLFNALTGAGVYAQDQLFATLDPTMRAIRLPSGRTVILSDTVGF--IS 228

Query: 282 DIVEK--EGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKNI 320
           D+  +  E  + T  EV  AD+IL                   +L E+   +  +  +N 
Sbjct: 229 DLPTQLIEAFRATLEEVAAADIILHVRDVAHPDTTAQRNDVVGVLSEMAKGEHPTLDENW 288

Query: 321 DF--IFIGTKSDLYSTYTE------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               I +  K+DL     E           +S+ TGEGL+ L + + + L+   +   ++
Sbjct: 289 PARTIEVLNKADLLGGIAEVPGLDDAASVAVSALTGEGLDALRSALDARLAAGMEIADYA 348

Query: 373 IP 374
           +P
Sbjct: 349 LP 350


>gi|296119858|ref|ZP_06838412.1| GTP-binding protein Era [Corynebacterium ammoniagenes DSM 20306]
 gi|295967012|gb|EFG80283.1| GTP-binding protein Era [Corynebacterium ammoniagenes DSM 20306]
          Length = 332

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           SH +    G   R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  
Sbjct: 25  SHYTNTPAG--FRSGF-VSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGLVHR 81

Query: 265 EGYLVKISDTAGIRETDDIVEK---EGIKRTFLEVE 297
           E   + + DT G+     ++ +   E +K T+ +V+
Sbjct: 82  EDAQIIVVDTPGLHRPRTLLGERLNEIVKETYQDVD 117


>gi|317129226|ref|YP_004095508.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474174|gb|ADU30777.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
           cellulosilyticus DSM 2522]
          Length = 282

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS++ N LA K +A V D PG T+    I +   G  +++ DT GI
Sbjct: 122 RALILGIPNVGKSTIINRLANKRIATVGDKPGVTKAQQWIKV---GKEMELLDTPGI 175


>gi|262373530|ref|ZP_06066808.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter junii
           SH205]
 gi|262311283|gb|EEY92369.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter junii
           SH205]
          Length = 258

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 18/101 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR----------DVLTIDLDLEGY 267
           GY+I   G SNAGKSS  NAL  KK +A  +  PG T+          D   +DL   GY
Sbjct: 61  GYEIAFAGRSNAGKSSAINALTNKKQLARASKRPGRTQMINFFSLGNPDQRLVDLPGYGY 120

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
                  A + E   IV ++ ++   +  ++   ++LL +I
Sbjct: 121 -------AAVPEAMKIVWQKELENYLIHRKSLQGLVLLMDI 154


>gi|304317028|ref|YP_003852173.1| GTP-binding proten HflX [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778530|gb|ADL69089.1| GTP-binding proten HflX [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 414

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 20/177 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG-IRE 279
           + I+G++NAGKS+L NAL    V  V D    T D     LDL  G    + DT G IR+
Sbjct: 202 VAIVGYTNAGKSTLMNALTDSSVY-VEDKLFATLDPTARKLDLPSGREAILIDTVGFIRK 260

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPKNI---------DFIFIG 326
              D+V  E  K T  E + AD++L + +I SK    +I   +N+           I + 
Sbjct: 261 LPHDLV--EAFKSTLEESKYADVLLHVIDITSKDIKHKIEVVENVLRDLEAIDKPIIKVY 318

Query: 327 TKSDLYSTYTEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            KSDL        D+   IS+    G++EL+  I ++       L F  P  K   Y
Sbjct: 319 NKSDLLEQMPVNKDNEIYISAKEMLGIDELLKAIDNVAYKDLFVLDFYFPYAKNKEY 375


>gi|92117387|ref|YP_577116.1| GTP-binding protein, HSR1-related [Nitrobacter hamburgensis X14]
 gi|91800281|gb|ABE62656.1| GTP-binding protein HflX [Nitrobacter hamburgensis X14]
          Length = 444

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 31/187 (16%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y++V L G++NAGKS+LFN L + +V    D+   T D     L L  G    +SDT
Sbjct: 207 RVPYRVVALVGYTNAGKSTLFNRLTRAEVQ-AADMLFATLDPTLRALALPHGGKAMLSDT 265

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---------- 324
            G             + T  EV  AD+IL +++I+ +   +   +++ +           
Sbjct: 266 VGFISNLPTQLVAAFRATLEEVMEADVILHVRDISHEDAEAQQHDVEAVLRQLGIDPGHG 325

Query: 325 -----IGTKSDLYSTYTEEYDH-------------LISSFTGEGLEELINKIKSILSNKF 366
                +  K D +     E                L+S+ TGEGL+ L+  I+  L+   
Sbjct: 326 ARILEVWNKIDRFDADQRENLENIAVRRSAEVPCFLVSAETGEGLDTLLAAIEDRLAATR 385

Query: 367 KKLPFSI 373
             L  S+
Sbjct: 386 TTLDLSV 392


>gi|70954467|ref|XP_746279.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56526831|emb|CAH77293.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 466

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 17/100 (17%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           F KN    HI  G             ++G+ N GKS++ N+L KK V I   IPG T+  
Sbjct: 300 FFKNMKKKHIHIG-------------LIGYPNVGKSAIINSLKKKVVCISACIPGQTKYW 346

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
             I L  + YL+   D  GI    DI + + I R  + +E
Sbjct: 347 QFIKLTNKIYLI---DCPGIVPY-DIEDSDKILRCTMRLE 382


>gi|147669311|ref|YP_001214129.1| GTP-binding protein, HSR1-related [Dehalococcoides sp. BAV1]
 gi|146270259|gb|ABQ17251.1| GTP-binding protein HflX [Dehalococcoides sp. BAV1]
          Length = 403

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 11/190 (5%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E Q ++ +  M   L  L GQW    +H+             E       + V   I  L
Sbjct: 131 EGQLQVELAQMQYLLPRLAGQW----SHLERLGGGIGTRGPGESQLETDKRIVRTKIRNL 186

Query: 200 KNDISSHISQGKLGEIIRN--GYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           K  +     Q +L    R   G  +V ++G++N+GKSSL NA+A+ DV     +  T  D
Sbjct: 187 KEHLDEVTIQRELYRERRRMRGVPVVSLVGYTNSGKSSLLNAVARTDVLAENKLFATL-D 245

Query: 257 VLTIDLDLEGY-LVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             T  L + G   V ++DT G IR+    + K   + T  E+  ADL++ + +I +K   
Sbjct: 246 PTTRRLYINGLGNVLLTDTVGFIRKLPPAIVK-AFRATLEEINQADLLVHVVDITAKNAF 304

Query: 315 SFPKNIDFIF 324
              + ++ I 
Sbjct: 305 EQCQTVEKIL 314


>gi|119718057|ref|YP_925022.1| GTP-binding protein, HSR1-related [Nocardioides sp. JS614]
 gi|119538718|gb|ABL83335.1| GTP-binding protein HflX [Nocardioides sp. JS614]
          Length = 493

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + I G++NAGKSSL N L    V    A+   +  TTR   T D    G +  +SDT G 
Sbjct: 277 VSIAGYTNAGKSSLLNRLTDAGVLVEDALFATLDPTTRRTTTAD----GRVYTMSDTVGF 332

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
           +R     +  E  + T  EV +ADLIL
Sbjct: 333 VRHLPHQL-VEAFRSTLEEVADADLIL 358


>gi|326793803|ref|YP_004311623.1| GTP-binding protein HSR1-related protein [Marinomonas mediterranea
           MMB-1]
 gi|326544567|gb|ADZ89787.1| GTP-binding protein HSR1-related protein [Marinomonas mediterranea
           MMB-1]
          Length = 452

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 222 IVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
           ++I+GH+N GK+SL   L + K    V +I GTTR V  +D+ +E   ++++ DT G  +
Sbjct: 5   LLIVGHANTGKTSLIRTLIRDKGFGQVGNIAGTTRHVEAVDIKVERRSVLRLIDTPGFED 64

Query: 280 T 280
           +
Sbjct: 65  S 65


>gi|317125285|ref|YP_004099397.1| GTP-binding protein HflX [Intrasporangium calvum DSM 43043]
 gi|315589373|gb|ADU48670.1| GTP-binding protein HflX [Intrasporangium calvum DSM 43043]
          Length = 495

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 19/175 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G++NAGKSSL N L    V +   +  T    +      +G    ++DT G   + 
Sbjct: 278 VAIAGYTNAGKSSLLNRLTGAGVLVENQLFATLDTTVRRSETKDGREFTLTDTVGFVRSL 337

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISF---PKNIDFIFIGTKS 329
                E  + T  EV +ADL+L +          +I + +E+       ++  + +  K+
Sbjct: 338 PTHLVEAFRSTLEEVGDADLLLHVVDGSHPDPEGQITAVREVLADVEAADVKEVIVVNKA 397

Query: 330 DLYST-------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D+            E++   +S+ TG G++ELI+ I   L     ++   +P H+
Sbjct: 398 DIADPDVLDRIRRHEKHSIAVSARTGAGIQELIDLIARELPKPDIEVDVLVPYHR 452


>gi|313678224|ref|YP_004055964.1| GTP-binding protein [Mycoplasma bovis PG45]
 gi|312950748|gb|ADR25343.1| GTP-binding protein [Mycoplasma bovis PG45]
          Length = 286

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D++N  SK ++  I  LK    S +++ K   +I +  K  ++G  NAGKS+L N ++ K
Sbjct: 92  DLRNPKSKNII--INKLKKITESKVAKDKQKGLINSRIKAFVMGIPNAGKSTLINLVSNK 149

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
               V + PG TR    + +D   ++    DT GI
Sbjct: 150 KSLQVANYPGVTRAKKWVTVDNFFFM----DTPGI 180


>gi|308510338|ref|XP_003117352.1| CRE-NST-1 protein [Caenorhabditis remanei]
 gi|308242266|gb|EFO86218.1| CRE-NST-1 protein [Caenorhabditis remanei]
          Length = 555

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 38/62 (61%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L ++    V ++PG T+++  ++LD     +++ D+ 
Sbjct: 256 IKTSIRVGVVGFPNVGKSSVINSLKRRKACNVGNLPGITKELQEVELDKN---IRLIDSP 312

Query: 276 GI 277
           G+
Sbjct: 313 GV 314


>gi|301167244|emb|CBW26826.1| putative GTP-binding protein [Bacteriovorax marinus SJ]
          Length = 613

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 37/137 (27%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL---------------- 264
           KI ++G  NAGKS+L N L     A+V+DI GTT D +    DL                
Sbjct: 214 KIALIGAPNAGKSTLLNLLVGAQRALVSDIAGTTVDPIEGFFDLYFGKEAKILEEDQGFS 273

Query: 265 --EGYLVK---------------ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
             +G L K               + D+  I E  D    + +     EV+     L+ +E
Sbjct: 274 SNDGLLFKQYEEFRRNNADVYQQMVDSYAIEEDSD----KNVGMEHFEVDYELTTLVTEE 329

Query: 308 INSKKEISFPKNIDFIF 324
           ++ ++  SF KN D +F
Sbjct: 330 LDQQRSESFDKNYDQVF 346



 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRD----VLTID--LDLEGYLVKISDT 274
           + ++G  N GKSSLFN L +K   AI  D PG TRD    + TI+   D++   + + DT
Sbjct: 8   VSLIGRPNVGKSSLFNRLMQKQHKAITHDQPGVTRDRHYGITTIEDLQDVDAADIILVDT 67

Query: 275 AG 276
            G
Sbjct: 68  GG 69


>gi|296454449|ref|YP_003661592.1| small GTP-binding protein [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183880|gb|ADH00762.1| small GTP-binding protein [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 501

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 28/165 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G++NAGKSSL N L       + A+   +    R   T D     Y+    DT G 
Sbjct: 283 VAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRAKTRDGRAYAYV----DTVGF 338

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL------------LLKEINSK-KEISFPKNIDFIF 324
                    E  K T  EV  AD+IL             +  +N    +I    +I  I 
Sbjct: 339 VRRLPTQLIEAFKSTLEEVAEADVILHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRIL 398

Query: 325 IGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSIL 362
           +  K+D     T E          ++S++TGEGL+EL   ++S+L
Sbjct: 399 VFNKADQADEATRERLAALQPDAFIVSAYTGEGLDELRTAVESLL 443


>gi|293351924|ref|XP_221100.5| PREDICTED: ATP-binding cassette, sub-family A (ABC1), member 8a
           [Rattus norvegicus]
          Length = 1616

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 28/162 (17%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDV-----QNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
           +I+ + HIR+ ++ + D+   +D       +F  KEV+     ++N    +I + K  E 
Sbjct: 441 FINYVFHIRTVLDNERDYEFPDDSFEPVSTDFHGKEVIR----IRNLTKEYIQRSKRTEA 496

Query: 216 IRN-------GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           +++       G    ILGHS AGKS+L N L+   V         T+  +TI    +  L
Sbjct: 497 LKDLTLDVYKGQITAILGHSGAGKSTLLNVLSGLCVP--------TKGWVTIH---DNKL 545

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEV-ENADLILLLKEIN 309
            +++D   I +   +  +  ++  FL V EN  L   +K I 
Sbjct: 546 SEMTDLESISKLTGVCPQCNVQFDFLTVRENLRLFAKIKGIQ 587


>gi|228475017|ref|ZP_04059745.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
           hominis SK119]
 gi|228271002|gb|EEK12390.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
           hominis SK119]
          Length = 294

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKKNIAQTGNKPGVTKQQQWIKV---GKALQLLDTPGI 175


>gi|303289114|ref|XP_003063845.1| hypothetical protein MICPUCDRAFT_53567 [Micromonas pusilla
           CCMP1545]
 gi|226454913|gb|EEH52218.1| hypothetical protein MICPUCDRAFT_53567 [Micromonas pusilla
           CCMP1545]
          Length = 526

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 38/179 (21%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDL---DLEGYLVKISDTAG 276
           +I ++G SN GKSSL N L  +KDVA  +  PG T+ +   ++   D + YLV +     
Sbjct: 336 EIAVIGRSNVGKSSLVNLLTGRKDVAKTSKNPGKTQTINHFEMITGDGKWYLVDLPGYGF 395

Query: 277 IRETDDIVEKEGI--KRTFLEVEN--ADLILLLKEINSKK----------EISFPKNIDF 322
               + + +K  +  +   LE EN  A ++L+   +  ++          E   P +I F
Sbjct: 396 ANAPERLRKKWALFTREYLLERENLLAVMLLIDSTVEPQRLDLECLEFLGENDIPVSIVF 455

Query: 323 IFIGTKSDL------------------YSTYTEEYDHLI--SSFTGEGLEELINKIKSI 361
             +  K  +                   S Y EE   +I  SS TG+G   L+N + ++
Sbjct: 456 TKVDKKRKVKSGKRAKPEENVEAFCREVSEYWEEMPPMIFTSSKTGDGKAALLNHVATL 514


>gi|134095727|ref|YP_001100802.1| putative GTPase [Herminiimonas arsenicoxydans]
 gi|133739630|emb|CAL62681.1| Putative GTPase [Herminiimonas arsenicoxydans]
          Length = 296

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I+I+G  N GKS+L NAL KK VA V D P  T+    + L   G  + ++DT G+
Sbjct: 98  RIMIMGIPNVGKSTLMNALLKKRVAKVGDEPAVTKMQQRLYL---GNNIVLTDTPGM 151


>gi|114565094|ref|YP_752608.1| GTPase EngB [Shewanella frigidimarina NCIMB 400]
 gi|119369253|sp|Q07W45|ENGB_SHEFN RecName: Full=Probable GTP-binding protein EngB
 gi|114336387|gb|ABI73769.1| cell division checkpoint GTPase YihA [Shewanella frigidimarina
           NCIMB 400]
          Length = 224

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 11/71 (15%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR--DVLTID 261
           +H+ Q   G+I   G +I   G SNAGKSS  NAL  +K +A  +  PG T+  +V  +D
Sbjct: 21  AHLDQYLPGDI---GVEIAFAGRSNAGKSSALNALTEQKSLARTSKTPGRTQLINVFQLD 77

Query: 262 -----LDLEGY 267
                +DL GY
Sbjct: 78  DDRRLVDLPGY 88


>gi|67538696|ref|XP_663122.1| hypothetical protein AN5518.2 [Aspergillus nidulans FGSC A4]
 gi|40743488|gb|EAA62678.1| hypothetical protein AN5518.2 [Aspergillus nidulans FGSC A4]
 gi|259485030|tpe|CBF81754.1| TPA: GTP binding protein (EngB), putative (AFU_orthologue;
           AFUA_6G13010) [Aspergillus nidulans FGSC A4]
          Length = 332

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 13/91 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-------------IDLDLEGY 267
           ++  LG SN GKSSL NA+  K++   +  PG TR++               + LD+ GY
Sbjct: 104 EVAFLGRSNVGKSSLLNAVMGKEMCWTSSKPGRTREMNAFGIGGTKGGESKIVLLDMPGY 163

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
                   G+     +  ++ ++R FL +++
Sbjct: 164 GKASRTEWGVEIMKYLQGRKQLRRAFLLIDS 194


>gi|289434771|ref|YP_003464643.1| GTPase, putative [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171015|emb|CBH27557.1| GTPase, putative [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 366

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     L
Sbjct: 155 EELRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVL 214

Query: 269 VKISDTAGI 277
           V   DT GI
Sbjct: 215 V---DTPGI 220


>gi|193213654|ref|YP_001999607.1| ferrous iron transport protein B [Chlorobaculum parvum NCIB 8327]
 gi|193087131|gb|ACF12407.1| ferrous iron transport protein B [Chlorobaculum parvum NCIB 8327]
          Length = 712

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G+ NAGKSSLFNAL       V + PG T +     LD   Y + + D  G     
Sbjct: 9   VALAGNPNAGKSSLFNALTGAHQR-VGNFPGVTIEKHEGYLDYRDYRINVVDLPGTYSLT 67

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
               +E + R F+  E  D+++
Sbjct: 68  PYSPEEIVTRRFIIDEQPDVVV 89


>gi|254852115|ref|ZP_05241463.1| GTP-binding protein YqeH [Listeria monocytogenes FSL R2-503]
 gi|300764844|ref|ZP_07074834.1| GTPase [Listeria monocytogenes FSL N1-017]
 gi|258605417|gb|EEW18025.1| GTP-binding protein YqeH [Listeria monocytogenes FSL R2-503]
 gi|300514520|gb|EFK41577.1| GTPase [Listeria monocytogenes FSL N1-017]
          Length = 366

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     L
Sbjct: 155 EELRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVL 214

Query: 269 VKISDTAGI 277
           V   DT GI
Sbjct: 215 V---DTPGI 220


>gi|116872920|ref|YP_849701.1| GTP-binding protein YqeH [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741798|emb|CAK20922.1| GTPase family protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 366

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     L
Sbjct: 155 EELRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVL 214

Query: 269 VKISDTAGI 277
           V   DT GI
Sbjct: 215 V---DTPGI 220


>gi|46907719|ref|YP_014108.1| GTP-binding protein YqeH [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|217964363|ref|YP_002350041.1| GTPase family protein [Listeria monocytogenes HCC23]
 gi|226224092|ref|YP_002758199.1| hypothetical protein Lm4b_01501b [Listeria monocytogenes Clip81459]
 gi|254931426|ref|ZP_05264785.1| GTP-binding protein YqeH [Listeria monocytogenes HPB2262]
 gi|290893851|ref|ZP_06556829.1| GTP-binding protein YqeH [Listeria monocytogenes FSL J2-071]
 gi|46880988|gb|AAT04285.1| putative GTPase [Listeria monocytogenes serotype 4b str. F2365]
 gi|217333633|gb|ACK39427.1| GTPase family protein [Listeria monocytogenes HCC23]
 gi|225876554|emb|CAS05263.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|290556568|gb|EFD90104.1| GTP-binding protein YqeH [Listeria monocytogenes FSL J2-071]
 gi|293582976|gb|EFF95008.1| GTP-binding protein YqeH [Listeria monocytogenes HPB2262]
 gi|307571072|emb|CAR84251.1| GTPase, putative [Listeria monocytogenes L99]
 gi|328465531|gb|EGF36760.1| GTPase YqeH [Listeria monocytogenes 1816]
 gi|328474857|gb|EGF45657.1| GTPase YqeH [Listeria monocytogenes 220]
 gi|332311933|gb|EGJ25028.1| GTP-binding protein [Listeria monocytogenes str. Scott A]
          Length = 366

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     L
Sbjct: 155 EELRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVL 214

Query: 269 VKISDTAGI 277
           V   DT GI
Sbjct: 215 V---DTPGI 220


>gi|317470564|ref|ZP_07929952.1| ferrous iron transporter B [Anaerostipes sp. 3_2_56FAA]
 gi|316902079|gb|EFV24005.1| ferrous iron transporter B [Anaerostipes sp. 3_2_56FAA]
          Length = 727

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRE 279
           KI + G+ N+GK++LFNAL   +   V + PG T  V   +  L+GY  V I D  GI  
Sbjct: 4   KIALAGNPNSGKTTLFNALTGSN-QFVGNWPGVT--VEKKEGKLKGYKDVTIMDLPGIYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                 +E + R +L  E  D IL
Sbjct: 61  LSPYTLEEVVARNYLIGERPDAIL 84


>gi|313633186|gb|EFS00066.1| ribosome biogenesis GTPase YqeH [Listeria seeligeri FSL N1-067]
          Length = 366

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     L
Sbjct: 155 EELRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVL 214

Query: 269 VKISDTAGI 277
           V   DT GI
Sbjct: 215 V---DTPGI 220


>gi|259487005|tpe|CBF85329.1| TPA: nucleolar GTPase, putative (AFU_orthologue; AFUA_4G08930)
           [Aspergillus nidulans FGSC A4]
          Length = 560

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GKSS+ N L KK V  V  IPG T+    + L    YL+       
Sbjct: 325 RKQISVGLIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYVTLMKRIYLIDCPGVVP 384

Query: 277 IRETDDIVEKEGIKRTFLEVENAD-----LILLLKEINSK 311
             +TD    ++ + R  + VEN +     +  +LK +  K
Sbjct: 385 PSQTD--TPEDILLRGVVRVENVENPEQYIPAILKRVQPK 422


>gi|260577137|ref|ZP_05845114.1| GTP-binding protein HSR1-related protein [Rhodobacter sp. SW2]
 gi|259020611|gb|EEW23930.1| GTP-binding protein HSR1-related protein [Rhodobacter sp. SW2]
          Length = 216

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++   G SN GKSSL NAL  +K +A  ++ PG T+++    L  E YLV +        
Sbjct: 46  EVCFAGRSNVGKSSLINALTGRKSLARASNTPGRTQEINYFALGTERYLVDLPGYGYAEA 105

Query: 280 TDDIVEK 286
              +VEK
Sbjct: 106 PVAVVEK 112


>gi|254430582|ref|ZP_05044285.1| ferrous iron transport protein B [Cyanobium sp. PCC 7001]
 gi|197625035|gb|EDY37594.1| ferrous iron transport protein B [Cyanobium sp. PCC 7001]
          Length = 600

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279
           + ++G  N GKS+L+N L     A V + PG T ++L   +  D +G   ++ D  GI +
Sbjct: 7   VALVGMPNTGKSTLYNRLTGGQ-AHVANWPGLTVELLRGALPPDRQGTPFELIDLPGIHD 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
                E E I    LE    DL+L++   +  + 
Sbjct: 66  LSGSSEDEAIVARMLERTPPDLVLVVLNASQARS 99


>gi|188994054|ref|YP_001928306.1| GTP-binding protein Era [Porphyromonas gingivalis ATCC 33277]
 gi|188593734|dbj|BAG32709.1| putative GTP-binding protein [Porphyromonas gingivalis ATCC 33277]
          Length = 299

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 60/109 (55%), Gaps = 9/109 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G+ N GKS+L N L  + ++I+T    TTR  +   ++     +  SDT G
Sbjct: 9   RSGF-VNIVGNPNVGKSTLMNLLVGERISIITSKAQTTRHRIMGIVNTPEMQIVYSDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLE--VENADLILLLKEINSKKEISFPKNIDFI 323
           +   +  +++E   R F E  + +AD+++ + ++  K +    KN DF+
Sbjct: 68  VLRPNYKLQQE--MREFSESALGDADVLVYVTDVVEKAD----KNADFL 110


>gi|157427850|ref|NP_001098832.1| RAS and EF-hand domain containing [Bos taurus]
 gi|157279072|gb|AAI53230.1| RASEF protein [Bos taurus]
 gi|296484517|gb|DAA26632.1| RAS and EF-hand domain containing [Bos taurus]
          Length = 740

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 33/154 (21%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-------LDLEGYLV 269
           +  YKIV+ G +  GKSS    L K       +  G T   L +D       +D E  ++
Sbjct: 539 QKAYKIVLAGDAAVGKSSFLMRLCK------NEFRGNTSATLGVDFQMKMLIVDGERTVL 592

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFP 317
           ++ DTAG +E    + K   +R       AD +LLL ++  +K            E +  
Sbjct: 593 QLWDTAG-QERFRSIAKSYFRR-------ADGVLLLYDVTCEKSFLNVREWVDMIEDAAH 644

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           ++I  + +G K+DL  T   E    +  + GE L
Sbjct: 645 ESIPIMLVGNKADLRDTAEAEGQKCVPGYFGEKL 678


>gi|120404786|ref|YP_954615.1| GTP-binding protein Era [Mycobacterium vanbaalenii PYR-1]
 gi|119957604|gb|ABM14609.1| GTP-binding protein Era [Mycobacterium vanbaalenii PYR-1]
          Length = 305

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    VAI ++ P TTR  +   +  + + + + DT G
Sbjct: 8   RSGF-VCFVGRPNTGKSTLTNALVGTKVAITSNRPQTTRHTIRGIVHRDEFQIVLVDTPG 66

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ +   E +K T+ EV+
Sbjct: 67  LHRPRTLLGQRLNELVKDTYSEVD 90


>gi|121602370|ref|YP_988790.1| GTP-binding protein Era [Bartonella bacilliformis KC583]
 gi|120614547|gb|ABM45148.1| GTP-binding protein Era [Bartonella bacilliformis KC583]
          Length = 301

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 212 LGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           + EI +  +  V ++G  NAGKS+L N L    V+IVT    TTR ++   +  E   + 
Sbjct: 1   MDEITKTRFGFVSLVGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIVIHEKTQIV 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           + DT GI      +E+  +   +  + +AD +L+L ++ +
Sbjct: 61  LVDTPGIFRPRKRLERAMVSAAWSGIRDADALLVLIDVQN 100


>gi|291522460|emb|CBK80753.1| GTP-binding protein Era [Coprococcus catus GD/7]
          Length = 300

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 8/88 (9%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRETDD 282
           ++G  N GKS+L N L  + +AI ++ P TTR+ + T+    EG +V + DT GI +  +
Sbjct: 12  LIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTSEEGQIVFV-DTPGIHKAKN 70

Query: 283 IVEKEGI---KRTFLEVENADLILLLKE 307
            + +  +   +RT  EV   D+IL L E
Sbjct: 71  KLGEYMVTVAERTLSEV---DVILWLVE 95


>gi|269120355|ref|YP_003308532.1| GTP-binding protein Era [Sebaldella termitidis ATCC 33386]
 gi|268614233|gb|ACZ08601.1| GTP-binding protein Era [Sebaldella termitidis ATCC 33386]
          Length = 293

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I I+G  N GKS++ N L ++ VAIV++  GTTRD
Sbjct: 6   IAIVGRPNVGKSTMMNKLIEEKVAIVSNKSGTTRD 40


>gi|323339886|ref|ZP_08080155.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus ruminis
           ATCC 25644]
 gi|323092759|gb|EFZ35362.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus ruminis
           ATCC 25644]
          Length = 284

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 6/58 (10%)

Query: 199 LKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           LK  I++  ++G     I+N   K + +G  N GKS+L N L KK+VAIV + PG T+
Sbjct: 104 LKEKIAAKEARG-----IKNSRIKAMCIGIPNVGKSTLLNRLVKKNVAIVGNKPGVTK 156


>gi|189499925|ref|YP_001959395.1| GTP-binding proten HflX [Chlorobium phaeobacteroides BS1]
 gi|189495366|gb|ACE03914.1| GTP-binding proten HflX [Chlorobium phaeobacteroides BS1]
          Length = 433

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 8/108 (7%)

Query: 199 LKNDISSHISQGK-LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           LK+    H +Q K  G I R    + ++G++NAGKS+L N L  +  A V D    T D 
Sbjct: 185 LKDVALQHATQTKDRGRITR----VALVGYTNAGKSTLMNRLCPEAEAYVEDRLFATLDT 240

Query: 258 LTIDLDLE-GYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
            T  L+L+   +V +SDT G IR+    +  E  + T  EV  AD +L
Sbjct: 241 KTRRLELKINKVVLLSDTVGFIRKLPHRL-VESFRSTLDEVLQADFLL 287


>gi|315303239|ref|ZP_07873887.1| ribosome biogenesis GTPase YqeH [Listeria ivanovii FSL F6-596]
 gi|313628396|gb|EFR96881.1| ribosome biogenesis GTPase YqeH [Listeria ivanovii FSL F6-596]
          Length = 366

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     L
Sbjct: 155 EELRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVL 214

Query: 269 VKISDTAGI 277
           V   DT GI
Sbjct: 215 V---DTPGI 220


>gi|306824920|ref|ZP_07458264.1| GTP-binding protein HflX [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304433131|gb|EFM36103.1| GTP-binding protein HflX [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 412

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNTLTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPRLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E+L    + KIK I  +   ++PFS  S+K H
Sbjct: 318 NKADLVEDFTPTQTPYALISAKSEDSREQLQALFLEKIKDIFESFTLRVPFS-KSYKIH 375


>gi|291458560|ref|ZP_06597950.1| GTP-binding protein Era [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291419093|gb|EFE92812.1| GTP-binding protein Era [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 313

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E IR+G+ + + G  N GKS+L NA+  + +AI +  P TTR  +    D E   +   D
Sbjct: 15  EGIRSGF-VGLAGRPNVGKSTLMNAVIGQKIAITSKRPQTTRKRIMGVYDDERGQIIFHD 73

Query: 274 TAGI 277
           T GI
Sbjct: 74  TPGI 77


>gi|289578198|ref|YP_003476825.1| GTP-binding proten HflX [Thermoanaerobacter italicus Ab9]
 gi|289527911|gb|ADD02263.1| GTP-binding proten HflX [Thermoanaerobacter italicus Ab9]
          Length = 413

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 14/96 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAI-----VTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G++NAGKS+L NAL K +V +      T  P   R +L       G  V + DT G
Sbjct: 201 VAIVGYTNAGKSTLLNALTKAEVYVEDKLFATLDPTARRLILP-----SGREVILIDTVG 255

Query: 277 -IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            IR+   D+V  E  K T  EV+ ADL+L + ++ S
Sbjct: 256 FIRKLPHDLV--EAFKSTLEEVKYADLLLHVIDVTS 289


>gi|254703996|ref|ZP_05165824.1| GTP-binding protein Era [Brucella suis bv. 3 str. 686]
 gi|261754649|ref|ZP_05998358.1| GTP-binding protein era [Brucella suis bv. 3 str. 686]
 gi|261744402|gb|EEY32328.1| GTP-binding protein era [Brucella suis bv. 3 str. 686]
          Length = 311

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR  L   + +EG   + + DT 
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTR-ALVRGIFIEGPAQIVLVDTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI      +++  +   +   ++AD+IL++
Sbjct: 76  GIFRPKRRLDRAMVTTAWGGAKDADIILVI 105


>gi|254824450|ref|ZP_05229451.1| GTP-binding protein YqeH [Listeria monocytogenes FSL J1-194]
 gi|254992210|ref|ZP_05274400.1| GTP-binding protein YqeH [Listeria monocytogenes FSL J2-064]
 gi|255520851|ref|ZP_05388088.1| GTP-binding protein YqeH [Listeria monocytogenes FSL J1-175]
 gi|293593687|gb|EFG01448.1| GTP-binding protein YqeH [Listeria monocytogenes FSL J1-194]
          Length = 366

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     L
Sbjct: 155 EELRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVL 214

Query: 269 VKISDTAGI 277
           V   DT GI
Sbjct: 215 V---DTPGI 220


>gi|83646553|ref|YP_434988.1| ferrous iron transport protein B [Hahella chejuensis KCTC 2396]
 gi|83634596|gb|ABC30563.1| ferrous iron transport protein B [Hahella chejuensis KCTC 2396]
          Length = 794

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y I ++G+ N GK++LFNAL       V + PG T +  +     +G   ++ D  G   
Sbjct: 27  YVIAVVGNPNCGKTTLFNALTGSKQR-VGNWPGVTVERKSGRFSFQGVDFELIDLPGTYS 85

Query: 280 TD----DIVEKEGIKRTFLEVENADLIL 303
            D    D+   E I R F+    ADLI+
Sbjct: 86  LDVCEEDVSLDEQIARDFVAGREADLII 113


>gi|152976100|ref|YP_001375617.1| small GTP-binding protein [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024852|gb|ABS22622.1| small GTP-binding protein [Bacillus cytotoxicus NVH 391-98]
          Length = 420

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVALIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMQLPCGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLVAAFRSTLEEAGEADVIL 280


>gi|300919290|ref|ZP_07135805.1| small GTP-binding protein [Escherichia coli MS 115-1]
 gi|300413628|gb|EFJ96938.1| small GTP-binding protein [Escherichia coli MS 115-1]
          Length = 287

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + +GKSSL NAL   +++ V+D+   TR+ L   L +    + + D  G+ E++
Sbjct: 39  IGIMGKTGSGKSSLCNALFTGEISPVSDVTACTREPLRFRLQVGKRFMTLVDLPGVGESE 98


>gi|297544479|ref|YP_003676781.1| GTP-binding proten HflX [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842254|gb|ADH60770.1| GTP-binding proten HflX [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 413

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 14/96 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAI-----VTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G++NAGKS+L NAL K +V +      T  P   R +L       G  V + DT G
Sbjct: 201 VAIVGYTNAGKSTLLNALTKAEVYVEDKLFATLDPTARRLILP-----SGREVILIDTVG 255

Query: 277 -IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            IR+   D+V  E  K T  EV+ ADL+L + ++ S
Sbjct: 256 FIRKLPHDLV--EAFKSTLEEVKYADLLLHVIDVTS 289


>gi|62289623|ref|YP_221416.1| GTP-binding protein Era [Brucella abortus bv. 1 str. 9-941]
 gi|82699551|ref|YP_414125.1| GTP-binding protein Era [Brucella melitensis biovar Abortus 2308]
 gi|189023876|ref|YP_001934644.1| GTP-binding protein Era [Brucella abortus S19]
 gi|237815118|ref|ZP_04594116.1| GTP-binding protein Era [Brucella abortus str. 2308 A]
 gi|254688938|ref|ZP_05152192.1| GTP-binding protein Era [Brucella abortus bv. 6 str. 870]
 gi|254693420|ref|ZP_05155248.1| GTP-binding protein Era [Brucella abortus bv. 3 str. Tulya]
 gi|254697073|ref|ZP_05158901.1| GTP-binding protein Era [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729969|ref|ZP_05188547.1| GTP-binding protein Era [Brucella abortus bv. 4 str. 292]
 gi|256257186|ref|ZP_05462722.1| GTP-binding protein Era [Brucella abortus bv. 9 str. C68]
 gi|260545622|ref|ZP_05821363.1| GTP-binding protein Era [Brucella abortus NCTC 8038]
 gi|260754425|ref|ZP_05866773.1| GTP-binding protein era [Brucella abortus bv. 6 str. 870]
 gi|260757644|ref|ZP_05869992.1| GTP-binding protein era [Brucella abortus bv. 4 str. 292]
 gi|260761471|ref|ZP_05873814.1| GTP-binding protein era [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883453|ref|ZP_05895067.1| GTP-binding protein era [Brucella abortus bv. 9 str. C68]
 gi|261213671|ref|ZP_05927952.1| GTP-binding protein era [Brucella abortus bv. 3 str. Tulya]
 gi|297248034|ref|ZP_06931752.1| GTP-binding protein Era [Brucella abortus bv. 5 str. B3196]
 gi|62195755|gb|AAX74055.1| Era, GTP-binding protein Era [Brucella abortus bv. 1 str. 9-941]
 gi|82615652|emb|CAJ10639.1| Serpin:Elongation factor, GTP-binding:ATP/GTP-binding site motif A
           (P-loop):Type 2 KH domain:Small GTP-binding protein
           domain [Brucella melitensis biovar Abortus 2308]
 gi|189019448|gb|ACD72170.1| GTP-binding protein Era [Brucella abortus S19]
 gi|237789955|gb|EEP64165.1| GTP-binding protein Era [Brucella abortus str. 2308 A]
 gi|260097029|gb|EEW80904.1| GTP-binding protein Era [Brucella abortus NCTC 8038]
 gi|260667962|gb|EEX54902.1| GTP-binding protein era [Brucella abortus bv. 4 str. 292]
 gi|260671903|gb|EEX58724.1| GTP-binding protein era [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674533|gb|EEX61354.1| GTP-binding protein era [Brucella abortus bv. 6 str. 870]
 gi|260872981|gb|EEX80050.1| GTP-binding protein era [Brucella abortus bv. 9 str. C68]
 gi|260915278|gb|EEX82139.1| GTP-binding protein era [Brucella abortus bv. 3 str. Tulya]
 gi|297175203|gb|EFH34550.1| GTP-binding protein Era [Brucella abortus bv. 5 str. B3196]
          Length = 311

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR  L   + +EG   + + DT 
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTR-ALVRGIFIEGPAQIVLVDTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI      +++  +   +   ++AD+IL++
Sbjct: 76  GIFRPKRRLDRAMVTTAWGGAKDADIILVI 105


>gi|33861473|ref|NP_893034.1| hypothetical protein PMM0916 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634050|emb|CAE19375.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 500

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 9/91 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGI 277
           Y +++ G  ++GK+S+  AL K  +  ++   GTT+D+ +  I + +    + I DT G+
Sbjct: 115 YNVILFGAGSSGKTSIARALLKNLIGKISPTIGTTKDITSYKIRIPILKRNINIIDTPGL 174

Query: 278 RETDDIVEKEGIKR---TFLEVENADLILLL 305
            E      KEG +R   T +E   +DLIL +
Sbjct: 175 FEA----SKEGQEREDSTIMEASKSDLILFV 201


>gi|69249005|ref|ZP_00604848.1| GTP-binding protein, HSR1-related [Enterococcus faecium DO]
 gi|257879593|ref|ZP_05659246.1| GTP-binding protein [Enterococcus faecium 1,230,933]
 gi|257882612|ref|ZP_05662265.1| GTP-binding protein [Enterococcus faecium 1,231,502]
 gi|257885035|ref|ZP_05664688.1| GTP-binding protein [Enterococcus faecium 1,231,501]
 gi|257890261|ref|ZP_05669914.1| GTP-binding protein [Enterococcus faecium 1,231,410]
 gi|257893445|ref|ZP_05673098.1| GTP-binding protein [Enterococcus faecium 1,231,408]
 gi|258616796|ref|ZP_05714566.1| GTP-binding protein [Enterococcus faecium DO]
 gi|260559742|ref|ZP_05831922.1| GTP-binding protein [Enterococcus faecium C68]
 gi|293557247|ref|ZP_06675795.1| GTP-binding protein HflX [Enterococcus faecium E1039]
 gi|293559761|ref|ZP_06676282.1| GTP-binding proten HflX [Enterococcus faecium E1162]
 gi|293567603|ref|ZP_06678947.1| GTP-binding proten HflX [Enterococcus faecium E1071]
 gi|294623235|ref|ZP_06702106.1| GTP-binding proten HflX [Enterococcus faecium U0317]
 gi|314938921|ref|ZP_07846188.1| GTP-binding protein HflX [Enterococcus faecium TX0133a04]
 gi|314943856|ref|ZP_07850589.1| GTP-binding protein HflX [Enterococcus faecium TX0133C]
 gi|314948096|ref|ZP_07851497.1| GTP-binding protein HflX [Enterococcus faecium TX0082]
 gi|314951638|ref|ZP_07854683.1| GTP-binding protein HflX [Enterococcus faecium TX0133A]
 gi|314993856|ref|ZP_07859190.1| GTP-binding protein HflX [Enterococcus faecium TX0133B]
 gi|314996698|ref|ZP_07861721.1| GTP-binding protein HflX [Enterococcus faecium TX0133a01]
 gi|68194312|gb|EAN08827.1| GTP-binding protein, HSR1-related [Enterococcus faecium DO]
 gi|257813821|gb|EEV42579.1| GTP-binding protein [Enterococcus faecium 1,230,933]
 gi|257818270|gb|EEV45598.1| GTP-binding protein [Enterococcus faecium 1,231,502]
 gi|257820887|gb|EEV48021.1| GTP-binding protein [Enterococcus faecium 1,231,501]
 gi|257826621|gb|EEV53247.1| GTP-binding protein [Enterococcus faecium 1,231,410]
 gi|257829824|gb|EEV56431.1| GTP-binding protein [Enterococcus faecium 1,231,408]
 gi|260074410|gb|EEW62732.1| GTP-binding protein [Enterococcus faecium C68]
 gi|291589704|gb|EFF21508.1| GTP-binding proten HflX [Enterococcus faecium E1071]
 gi|291597342|gb|EFF28522.1| GTP-binding proten HflX [Enterococcus faecium U0317]
 gi|291600611|gb|EFF30915.1| GTP-binding protein HflX [Enterococcus faecium E1039]
 gi|291606309|gb|EFF35722.1| GTP-binding proten HflX [Enterococcus faecium E1162]
 gi|313589136|gb|EFR67981.1| GTP-binding protein HflX [Enterococcus faecium TX0133a01]
 gi|313591666|gb|EFR70511.1| GTP-binding protein HflX [Enterococcus faecium TX0133B]
 gi|313596234|gb|EFR75079.1| GTP-binding protein HflX [Enterococcus faecium TX0133A]
 gi|313597474|gb|EFR76319.1| GTP-binding protein HflX [Enterococcus faecium TX0133C]
 gi|313641795|gb|EFS06375.1| GTP-binding protein HflX [Enterococcus faecium TX0133a04]
 gi|313645432|gb|EFS10012.1| GTP-binding protein HflX [Enterococcus faecium TX0082]
          Length = 409

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 19/198 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I ++G++NAGKS++ N L + D     D    T D LT      EG+ + ++DT G  
Sbjct: 194 FQIGLIGYTNAGKSTILNLLTQAD-TYSKDQLFATLDPLTKRWRFAEGFEITVTDTVGFI 252

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIG 326
           +       +    T  E +N DL+L + + +S   I               K +  + + 
Sbjct: 253 QDLPTQLIDAFHSTLEESQNMDLLLHVVDASSPDRILQEQTVLKLMDELNMKEMPILTVY 312

Query: 327 TKSDLYS----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLY 381
            K+D       T T   + LIS+ T EG   LI  IK  L         S+PS++ + L 
Sbjct: 313 NKADQIDPAMFTPTLFPNVLISTQTKEGKMALIEAIKRQLMELMTPYTLSVPSNEGQKLS 372

Query: 382 HLSQTVRYLEMASLNEKD 399
            L +    L+ A + E +
Sbjct: 373 ELRRQTMVLDEAYMEETN 390


>gi|326202948|ref|ZP_08192815.1| GTP-binding proten HflX [Clostridium papyrosolvens DSM 2782]
 gi|325987025|gb|EGD47854.1| GTP-binding proten HflX [Clostridium papyrosolvens DSM 2782]
          Length = 596

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 38/181 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGT---TRDVLTIDLDLEGYLVKISDTAG-I 277
           I I+G++NAGKS+L N +   +V +   +  T   +   LT+    E  LV   DT G I
Sbjct: 380 IAIVGYTNAGKSTLLNRMCGSEVLVEDKLFATLDPSARQLTMSDGREAILV---DTVGFI 436

Query: 278 RE-TDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPKNI---------DFIF 324
           R+   D++  E  K T  E  +AD++L + +    N   +IS  + +         + I 
Sbjct: 437 RKLPHDLI--EAFKSTLEEAVHADMLLHVVDASNENVSMQISVVEKLLEELGASTKNTIL 494

Query: 325 IGTKSDL-----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           +  K DL           YS+  E     IS+ TG G+E+L+ KI     ++ K++   +
Sbjct: 495 VLNKQDLIKDGRRISTVGYSSVCE-----ISASTGFGIEQLLEKITEGFMHQLKEVNLLV 549

Query: 374 P 374
           P
Sbjct: 550 P 550


>gi|281411523|ref|YP_003345602.1| GTP-binding protein Era [Thermotoga naphthophila RKU-10]
 gi|281372626|gb|ADA66188.1| GTP-binding protein Era [Thermotoga naphthophila RKU-10]
          Length = 300

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDT 274
           I++G+ + + G  N GKS+  NA+  + V IV+D P TTR+ +  I  D +  ++ + DT
Sbjct: 3   IKSGF-VALAGKPNVGKSTFINAVMGRKVVIVSDKPQTTRNRINCIYTDKDSQIIFV-DT 60

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +K     ++  DL+L +
Sbjct: 61  PGIHKPLHRLGEYMVKAAVQALKGVDLVLFM 91


>gi|159027574|emb|CAO86947.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 318

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 215 IIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           I   G+K   I I+G  N GKS+L N L  + +AI + I  TTR+ L   +  E   +  
Sbjct: 19  IAPTGFKSGFIGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGIVTDERSQMIF 78

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            DT GI +    + K  +K     + + DL+L +
Sbjct: 79  VDTPGIHKPHHELGKVLVKNAENAINSVDLVLFV 112


>gi|126652809|ref|ZP_01724954.1| Era [Bacillus sp. B14905]
 gi|126590345|gb|EAZ84465.1| Era [Bacillus sp. B14905]
          Length = 271

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           R+GYK   I I+G  N GKS+  N +  + +AI++D P TTR+
Sbjct: 5   RSGYKSGFISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRN 47


>gi|152998055|ref|YP_001342890.1| HSR1-like GTP-binding protein [Marinomonas sp. MWYL1]
 gi|150838979|gb|ABR72955.1| GTP-binding protein HSR1-related [Marinomonas sp. MWYL1]
          Length = 454

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 39/61 (63%), Gaps = 2/61 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           ++++GH+N GK+SL   L ++ D   V+D  GTTR V ++ + + +  ++ ++DT G  +
Sbjct: 5   LLVVGHANTGKTSLIRTLLRRQDFGEVSDRAGTTRHVESVKIKIGQQSVITLTDTPGFED 64

Query: 280 T 280
           +
Sbjct: 65  S 65


>gi|90424140|ref|YP_532510.1| GTP-binding protein Era [Rhodopseudomonas palustris BisB18]
 gi|90106154|gb|ABD88191.1| GTP-binding protein Era [Rhodopseudomonas palustris BisB18]
          Length = 320

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 36/217 (16%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           +VLND +  + D  S  + G +    R G+ + ++G  N GKS+L NAL    V IV+  
Sbjct: 4   DVLNDHVESEQDAES--AAGPVE--TRCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRK 58

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE--- 307
             TTR ++   +  +   + + DT GI      +++  +K  +    +ADL+ +L +   
Sbjct: 59  VQTTRALIRGIVIEDHAQIILVDTPGIFLPKRRLDRAMVKTAWSGAHDADLVCVLLDARE 118

Query: 308 ---------INSKKEISFPK--NIDFIFIGTKSDLYSTYTEEYDHL-------ISSFTGE 349
                    +    +++ PK   I+ + I +K  L        + L       +S+ +G+
Sbjct: 119 GIDEEADAILTKLSQVNHPKILVINKVDIVSKEKLLKLAQSANERLKFDETFMVSALSGD 178

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHK------RHL 380
           G+E+L    +  L++K    P+  P  +      RHL
Sbjct: 179 GVEDL----RKSLASKVPPGPYHYPEDQMSDAPMRHL 211


>gi|327440936|dbj|BAK17301.1| GTPase [Solibacillus silvestris StLB046]
          Length = 304

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 32/180 (17%)

Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +   L  +       DT 
Sbjct: 6   GYKSGFVSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTQQNSQTIFIDTP 65

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI---FIGTKSDLY 332
           GI +    + +  +K +   +   D+I+ +  +N+++ I   K  +FI     G K+ ++
Sbjct: 66  GIHKPKHKLGEFMLKTSRNALREVDVIMFM--VNAEQAIG--KGDEFIIELLQGNKTPVF 121

Query: 333 ------------------STYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLP 370
                              +Y +++D      IS+  G  +E L++ I+  L    +  P
Sbjct: 122 LIINKIDLVHPDELVKIIDSYKDKFDFAEIIPISALQGNNVENLLSTIEKYLPEGPQYYP 181


>gi|256060790|ref|ZP_05450952.1| GTP-binding protein Era [Brucella neotomae 5K33]
 gi|261324781|ref|ZP_05963978.1| GTP-binding protein era [Brucella neotomae 5K33]
 gi|261300761|gb|EEY04258.1| GTP-binding protein era [Brucella neotomae 5K33]
          Length = 311

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR  L   + +EG   + + DT 
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTR-ALVRGIFIEGPAQIVLVDTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI      +++  +   +   ++AD+IL++
Sbjct: 76  GIFRPKRRLDRAMVTTAWGGAKDADIILVI 105


>gi|254486973|ref|ZP_05100178.1| GTP-binding proten HflX [Roseobacter sp. GAI101]
 gi|214043842|gb|EEB84480.1| GTP-binding proten HflX [Roseobacter sp. GAI101]
          Length = 412

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 26/174 (14%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y IV L G++NAGKS+LFN L   DV +  D+   T D     L L +G  + +SDT G 
Sbjct: 191 YPIVALVGYTNAGKSTLFNRLTGADV-MAKDMLFATLDPTMRSLVLPDGPEIILSDTVGF 249

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------EISFPKNIDFIF 324
                       + T  EV  AD+I  +++I+  +              +  PK      
Sbjct: 250 ISDLPTELVAAFRATLEEVLAADIICHVRDISHAETEEQAQNVRDILASLGVPKETRSFE 309

Query: 325 IGTKSDLYST-------YTEEYDH---LISSFTGEGLEELINKIKSILSNKFKK 368
           +  K DL +           E D     IS+ TGEGLE++ + I   L    ++
Sbjct: 310 VWNKLDLLAPDRADAVRARAERDPNVLAISAITGEGLEQMQSVIAEALQGVVRE 363


>gi|157364593|ref|YP_001471360.1| small GTP-binding protein [Thermotoga lettingae TMO]
 gi|157315197|gb|ABV34296.1| small GTP-binding protein [Thermotoga lettingae TMO]
          Length = 168

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           I  +G SN GKS+L N L  K +A  +  PG TR +   +++ + Y V
Sbjct: 5   ICFVGRSNVGKSTLLNVLFNKKIARASKRPGKTRSINFYEVNRKYYFV 52


>gi|153009953|ref|YP_001371168.1| GTP-binding protein Era [Ochrobactrum anthropi ATCC 49188]
 gi|151561841|gb|ABS15339.1| GTP-binding protein Era [Ochrobactrum anthropi ATCC 49188]
          Length = 311

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++  I ++ +  +V + DT 
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEDQAQIV-LVDTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI      +++  +   +   ++AD+IL+L
Sbjct: 76  GIFRPKRRLDRAMVTTAWGGAKDADIILVL 105


>gi|148560637|ref|YP_001258647.1| GTP-binding protein Era [Brucella ovis ATCC 25840]
 gi|225627161|ref|ZP_03785199.1| GTP-binding protein Era [Brucella ceti str. Cudo]
 gi|225852184|ref|YP_002732417.1| GTP-binding protein Era [Brucella melitensis ATCC 23457]
 gi|254701450|ref|ZP_05163278.1| GTP-binding protein Era [Brucella suis bv. 5 str. 513]
 gi|254707630|ref|ZP_05169458.1| GTP-binding protein Era [Brucella pinnipedialis M163/99/10]
 gi|254709788|ref|ZP_05171599.1| GTP-binding protein Era [Brucella pinnipedialis B2/94]
 gi|254713790|ref|ZP_05175601.1| GTP-binding protein Era [Brucella ceti M644/93/1]
 gi|254717153|ref|ZP_05178964.1| GTP-binding protein Era [Brucella ceti M13/05/1]
 gi|256031278|ref|ZP_05444892.1| GTP-binding protein Era [Brucella pinnipedialis M292/94/1]
 gi|256113202|ref|ZP_05454070.1| GTP-binding protein Era [Brucella melitensis bv. 3 str. Ether]
 gi|256159388|ref|ZP_05457170.1| GTP-binding protein Era [Brucella ceti M490/95/1]
 gi|256254686|ref|ZP_05460222.1| GTP-binding protein Era [Brucella ceti B1/94]
 gi|256264306|ref|ZP_05466838.1| GTP-binding protein Era [Brucella melitensis bv. 2 str. 63/9]
 gi|260168416|ref|ZP_05755227.1| GTP-binding protein Era [Brucella sp. F5/99]
 gi|261218968|ref|ZP_05933249.1| GTP-binding protein era [Brucella ceti M13/05/1]
 gi|261221864|ref|ZP_05936145.1| GTP-binding protein era [Brucella ceti B1/94]
 gi|261315122|ref|ZP_05954319.1| GTP-binding protein era [Brucella pinnipedialis M163/99/10]
 gi|261317323|ref|ZP_05956520.1| GTP-binding protein era [Brucella pinnipedialis B2/94]
 gi|261321533|ref|ZP_05960730.1| GTP-binding protein era [Brucella ceti M644/93/1]
 gi|261751990|ref|ZP_05995699.1| GTP-binding protein era [Brucella suis bv. 5 str. 513]
 gi|261757877|ref|ZP_06001586.1| GTP-binding protein Era [Brucella sp. F5/99]
 gi|265988361|ref|ZP_06100918.1| GTP-binding protein era [Brucella pinnipedialis M292/94/1]
 gi|265994610|ref|ZP_06107167.1| GTP-binding protein era [Brucella melitensis bv. 3 str. Ether]
 gi|265997828|ref|ZP_06110385.1| GTP-binding protein era [Brucella ceti M490/95/1]
 gi|294852026|ref|ZP_06792699.1| GTP-binding protein Era [Brucella sp. NVSL 07-0026]
 gi|148371894|gb|ABQ61873.1| GTP-binding protein Era [Brucella ovis ATCC 25840]
 gi|225617996|gb|EEH15040.1| GTP-binding protein Era [Brucella ceti str. Cudo]
 gi|225640549|gb|ACO00463.1| GTP-binding protein Era [Brucella melitensis ATCC 23457]
 gi|260920448|gb|EEX87101.1| GTP-binding protein era [Brucella ceti B1/94]
 gi|260924057|gb|EEX90625.1| GTP-binding protein era [Brucella ceti M13/05/1]
 gi|261294223|gb|EEX97719.1| GTP-binding protein era [Brucella ceti M644/93/1]
 gi|261296546|gb|EEY00043.1| GTP-binding protein era [Brucella pinnipedialis B2/94]
 gi|261304148|gb|EEY07645.1| GTP-binding protein era [Brucella pinnipedialis M163/99/10]
 gi|261737861|gb|EEY25857.1| GTP-binding protein Era [Brucella sp. F5/99]
 gi|261741743|gb|EEY29669.1| GTP-binding protein era [Brucella suis bv. 5 str. 513]
 gi|262552296|gb|EEZ08286.1| GTP-binding protein era [Brucella ceti M490/95/1]
 gi|262765723|gb|EEZ11512.1| GTP-binding protein era [Brucella melitensis bv. 3 str. Ether]
 gi|263094579|gb|EEZ18377.1| GTP-binding protein Era [Brucella melitensis bv. 2 str. 63/9]
 gi|264660558|gb|EEZ30819.1| GTP-binding protein era [Brucella pinnipedialis M292/94/1]
 gi|294820615|gb|EFG37614.1| GTP-binding protein Era [Brucella sp. NVSL 07-0026]
 gi|326408684|gb|ADZ65749.1| GTP-binding protein Era [Brucella melitensis M28]
 gi|326538409|gb|ADZ86624.1| GTP-binding protein Era [Brucella melitensis M5-90]
          Length = 311

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR  L   + +EG   + + DT 
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTR-ALVRGIFIEGPAQIVLVDTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI      +++  +   +   ++AD+IL++
Sbjct: 76  GIFRPKRRLDRAMVTTAWGGAKDADIILVI 105


>gi|330719333|ref|ZP_08313933.1| GTPase YqeH [Leuconostoc fallax KCTC 3537]
          Length = 379

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 8/127 (6%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAI-----VTDIPGTTRDVLTIDLDLEGYLVK 270
           +R G  + ++G +N GKS+L N + K    I      +  PGTT D + I LD    LV 
Sbjct: 175 LRLGEDVYVVGVTNVGKSTLINRIIKSRTGIQELITTSRFPGTTLDRIEIPLDDGAQLV- 233

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
             DT GI + D +      K     + N ++     ++N+++ I       F F+  +  
Sbjct: 234 --DTPGIVKRDQMAHALSEKDLKFALPNHEIKPKTYQLNAEQTIFIGGLARFDFVNGERA 291

Query: 331 LYSTYTE 337
             + Y E
Sbjct: 292 AVTAYFE 298


>gi|313608710|gb|EFR84539.1| ribosome biogenesis GTPase YqeH [Listeria monocytogenes FSL F2-208]
          Length = 371

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     L
Sbjct: 160 EELRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVL 219

Query: 269 VKISDTAGI 277
           V   DT GI
Sbjct: 220 V---DTPGI 225


>gi|294632101|ref|ZP_06710661.1| ribosome small subunit-dependent GTPase A [Streptomyces sp. e14]
 gi|292835434|gb|EFF93783.1| ribosome small subunit-dependent GTPase A [Streptomyces sp. e14]
          Length = 358

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVT---DIPGTTRDVLTID--LDLEGYLVKISDTAGI 277
           V+LG S AGKSSL NAL  +DV  V    D+ G  R   T    L L G  V I DT G+
Sbjct: 234 VLLGQSGAGKSSLANALLGEDVMGVQRIRDVDGKGRHTTTTRNLLVLPGGGVLI-DTPGL 292

Query: 278 RETDDIVEKEGIKRTFLEVE 297
           R       + G+ + F E+E
Sbjct: 293 RGVGLWDAESGVGQVFAEIE 312


>gi|260886788|ref|ZP_05898051.1| GTP-binding protein Era [Selenomonas sputigena ATCC 35185]
 gi|330839400|ref|YP_004413980.1| GTP-binding protein Era [Selenomonas sputigena ATCC 35185]
 gi|260863387|gb|EEX77887.1| GTP-binding protein Era [Selenomonas sputigena ATCC 35185]
 gi|329747164|gb|AEC00521.1| GTP-binding protein Era [Selenomonas sputigena ATCC 35185]
          Length = 297

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 3/62 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R+G+ I ++G  N GKS+L N+L  + + I++D P TTR  +L I  + +  +V + DT 
Sbjct: 7   RSGF-IAVVGRPNVGKSTLINSLIGQKIVIMSDKPQTTRTRILCILTEPDAQIVFL-DTP 64

Query: 276 GI 277
           GI
Sbjct: 65  GI 66


>gi|327308850|ref|XP_003239116.1| hypothetical protein TERG_01099 [Trichophyton rubrum CBS 118892]
 gi|326459372|gb|EGD84825.1| hypothetical protein TERG_01099 [Trichophyton rubrum CBS 118892]
          Length = 320

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 29/176 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-------------LDLEGY 267
           ++V +G SN GKSS+ N L  +D+   +  PG T+ +                 +D  GY
Sbjct: 109 EVVFMGRSNVGKSSVINMLVGEDICYTSATPGRTQTMNAFGIGGTKGGETKINIIDSPGY 168

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVE------NAD--LILLLKEINSKKEISFPKN 319
                   G      + +++ ++R FL +E      N+D  ++ +L+E     +I   K 
Sbjct: 169 GKASRPEWGHELMKYLSKRQQLRRVFLIIECKAGVKNSDKEVLSILREFTVPHQIIVSKA 228

Query: 320 IDFIFIGTKSDLYSTYT---EEYDHLISSFTGE---GLEELINKIKSIL--SNKFK 367
            +F+  G   +  S  T   +++  +IS    E    LEE I  +  IL  SN+ +
Sbjct: 229 DNFLTEGRAGNQESHRTASLKQFRQIISRIRKEVTPTLEEGIPPLGHILACSNRIR 284


>gi|314936594|ref|ZP_07843941.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
           hominis subsp. hominis C80]
 gi|313655213|gb|EFS18958.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
           hominis subsp. hominis C80]
          Length = 294

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKKNIAQTGNKPGVTKQQQWIKV---GKALQLLDTPGI 175


>gi|288803891|ref|ZP_06409316.1| GTP-binding protein Era [Prevotella melaninogenica D18]
 gi|288333656|gb|EFC72106.1| GTP-binding protein Era [Prevotella melaninogenica D18]
          Length = 293

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ E   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTEDTQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  ++ +   + +AD++L + ++    E    KN+DF+
Sbjct: 69  MQEMMLQFSESALADADILLYVTDVVEDPE----KNMDFL 104


>gi|317051559|ref|YP_004112675.1| GTP-binding protein Era [Desulfurispirillum indicum S5]
 gi|316946643|gb|ADU66119.1| GTP-binding protein Era [Desulfurispirillum indicum S5]
          Length = 300

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L  A+  + ++I++D P TTR+ +      + + V   DT G
Sbjct: 4   RSGF-VGIVGRPNVGKSTLMGAIIGEKISIISDKPQTTRNRIMGVWHGDDFQVVFLDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           + +    +    +   F  +   D++LL+ E
Sbjct: 63  VHKGKYGINDFMLNTAFSVLSEVDILLLVVE 93


>gi|240047402|ref|YP_002960790.1| GTP-binding protein Era [Mycoplasma conjunctivae HRC/581]
 gi|239984974|emb|CAT04967.1| GTP-binding protein [Mycoplasma conjunctivae]
          Length = 292

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N+GKSSL N L    V+IV+    TTRD++    + +   +   DT G  +  
Sbjct: 7   VSIVGLPNSGKSSLLNTLLDFPVSIVSSKSQTTRDLINGIYNEDNLQIVFVDTPGFHKKI 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
           + +     K     +E+ D++L L  +N K
Sbjct: 67  NNLSNVLNKAVINSIEDIDVVLFLHPVNWK 96


>gi|229544341|ref|ZP_04433400.1| GTP-binding proten HflX [Bacillus coagulans 36D1]
 gi|229325480|gb|EEN91156.1| GTP-binding proten HflX [Bacillus coagulans 36D1]
          Length = 416

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++I ++G++NAGKS+LFN L+     +++    T  P T + VL       GY   ++DT
Sbjct: 198 FQIALVGYTNAGKSTLFNRLSAANSYEENQLFATLDPMTRKVVLP-----SGYTALLTDT 252

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          + T  EV  ADL+L
Sbjct: 253 VGFIQDLPTTLIAAFRSTLEEVREADLLL 281


>gi|226328141|ref|ZP_03803659.1| hypothetical protein PROPEN_02032 [Proteus penneri ATCC 35198]
 gi|225203845|gb|EEG86199.1| hypothetical protein PROPEN_02032 [Proteus penneri ATCC 35198]
          Length = 170

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  ++ ID D   Y     DT G+   
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTD-GAYQAIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKR 291
             I EK  I R
Sbjct: 68  --IEEKRAINR 76


>gi|86357029|ref|YP_468921.1| GTP-binding protein Era [Rhizobium etli CFN 42]
 gi|86281131|gb|ABC90194.1| GTP-binding protein [Rhizobium etli CFN 42]
          Length = 313

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 21/162 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 24  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPK-----NIDFIF 324
             +++  +   +   ++ADLI+LL +            +   KE+  PK      ID + 
Sbjct: 84  RRLDRAMVTSAWGGAKDADLIMLLIDSERGLRGDAEAILEGLKEVQQPKILVLNKIDRVN 143

Query: 325 IGTKSDLYSTYTEE--YDH--LISSFTGEGLEELINKIKSIL 362
                 L ++  E+  +D   +IS+ TG G +++++ + S L
Sbjct: 144 REDLLALAASANEKIAFDRTFMISAETGSGCDDVMDYLASTL 185


>gi|23501550|ref|NP_697677.1| GTP-binding protein Era [Brucella suis 1330]
 gi|161618633|ref|YP_001592520.1| GTP-binding protein Era [Brucella canis ATCC 23365]
 gi|260566757|ref|ZP_05837227.1| GTP-binding protein Era [Brucella suis bv. 4 str. 40]
 gi|38257341|sp|Q8G1P9|ERA_BRUSU RecName: Full=GTPase Era
 gi|23347461|gb|AAN29592.1| GTP-binding protein Era [Brucella suis 1330]
 gi|161335444|gb|ABX61749.1| GTP-binding protein Era [Brucella canis ATCC 23365]
 gi|260156275|gb|EEW91355.1| GTP-binding protein Era [Brucella suis bv. 4 str. 40]
          Length = 311

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR  L   + +EG   + + DT 
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTR-ALVRGIFIEGPAQIVLVDTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI      +++  +   +   ++AD+IL++
Sbjct: 76  GIFRPKRRLDRAMVTTAWGGAKDADIILVI 105


>gi|16800594|ref|NP_470862.1| GTP-binding protein YqeH [Listeria innocua Clip11262]
 gi|16413999|emb|CAC96757.1| lin1526 [Listeria innocua Clip11262]
 gi|313618857|gb|EFR90732.1| ribosome biogenesis GTPase YqeH [Listeria innocua FSL S4-378]
          Length = 366

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     L
Sbjct: 155 EELRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVL 214

Query: 269 VKISDTAGI 277
           V   DT GI
Sbjct: 215 V---DTPGI 220


>gi|47093412|ref|ZP_00231177.1| GTPase, putative [Listeria monocytogenes str. 4b H7858]
 gi|47018191|gb|EAL08959.1| GTPase, putative [Listeria monocytogenes str. 4b H7858]
          Length = 371

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     L
Sbjct: 160 EELRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVL 219

Query: 269 VKISDTAGI 277
           V   DT GI
Sbjct: 220 V---DTPGI 225


>gi|294675552|ref|YP_003576168.1| GTP-binding protein Era [Prevotella ruminicola 23]
 gi|294472154|gb|ADE81543.1| GTP-binding protein Era [Prevotella ruminicola 23]
          Length = 295

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++     +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTPEMQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
           +++  +  +   +++AD++L + ++    E    KN+DF+    K D+
Sbjct: 69  LQESMLAFSESALQDADVLLYVTDVVENPE----KNMDFLAKVQKLDM 112


>gi|197120019|ref|YP_002140446.1| ferrous iron transport protein B [Geobacter bemidjiensis Bem]
 gi|197089379|gb|ACH40650.1| ferrous iron transport protein B [Geobacter bemidjiensis Bem]
          Length = 741

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G+ N+GKS+L NA+A   +  V +  G T +     LD  G  +++ D  G     
Sbjct: 32  VAVAGNPNSGKSTLINAIAGTRLH-VGNWAGVTVEKKEAQLDYAGRKIRLVDLPGTYSLS 90

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
              ++E + R +L  E  DLI+
Sbjct: 91  PYTQEEIVARDYLVNERPDLIV 112


>gi|56421023|ref|YP_148341.1| GTP-binding protein [Geobacillus kaustophilus HTA426]
 gi|56380865|dbj|BAD76773.1| GTP-binding protein [Geobacillus kaustophilus HTA426]
          Length = 302

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 26/179 (14%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKIS 272
           + GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +  +  D +  ++ I 
Sbjct: 3   KEGYKSGFVAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDDAQIIFI- 61

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP--- 317
           DT G+ +    +    +K     +   DLIL +              I   KE+  P   
Sbjct: 62  DTPGVHKPKHKLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLKEVDTPVFL 121

Query: 318 --KNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLP 370
               ID +       L   Y + Y       IS+  G  ++ L+ +IK  L    +  P
Sbjct: 122 VINKIDRVHPDELLPLIDRYKDLYPFAEIVPISALEGNNVDRLLEQIKERLPEGPQYYP 180


>gi|329667435|gb|AEB93383.1| hypothetical protein LJP_1058c [Lactobacillus johnsonii DPC 6026]
          Length = 279

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 9/109 (8%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFL--KNDISSHISQGKLGEIIRNGYKIVILGHS 228
           + + D +F    D Q+ ++   L  I+ L  K      I++G    +IR    + I G  
Sbjct: 75  YYQDDGNFVISMDAQHTTNMTSLFKIIKLAGKKKTDKLIAKGASNPMIR----VAIAGIP 130

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N GKS++ N +  ++ AIV D PG TR    +        V+I DT GI
Sbjct: 131 NCGKSTIINRMVGRNAAIVGDKPGVTRGQSWLKTKTN---VQILDTPGI 176


>gi|313623708|gb|EFR93856.1| ribosome biogenesis GTPase YqeH [Listeria innocua FSL J1-023]
          Length = 366

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     L
Sbjct: 155 EELRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVL 214

Query: 269 VKISDTAGI 277
           V   DT GI
Sbjct: 215 V---DTPGI 220


>gi|309799959|ref|ZP_07694160.1| GTP-binding proten HflX [Streptococcus infantis SK1302]
 gi|308116406|gb|EFO53881.1| GTP-binding proten HflX [Streptococcus infantis SK1302]
          Length = 412

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNTLTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPRLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEE----LINKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E+    L++KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVEDFTPTQTPYALISAKSKDSREQLQALLLDKIKEIFEPFTLRVPFS-KSYKIH 375


>gi|296504794|ref|YP_003666494.1| GTP-binding protein Era [Bacillus thuringiensis BMB171]
 gi|296325846|gb|ADH08774.1| GTP-binding protein Era [Bacillus thuringiensis BMB171]
          Length = 301

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   D
Sbjct: 3   RKGYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           T GI +    +    +K     ++  D++L +
Sbjct: 63  TPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFM 94


>gi|289432578|ref|YP_003462451.1| GTP-binding proten HflX [Dehalococcoides sp. GT]
 gi|288946298|gb|ADC73995.1| GTP-binding proten HflX [Dehalococcoides sp. GT]
          Length = 403

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 11/190 (5%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E Q ++ +  M   L  L GQW    +H+             E       + V   I  L
Sbjct: 131 EGQLQVELAQMQYLLPRLAGQW----SHLERLGGGIGTRGPGESQLETDKRIVRTKIRNL 186

Query: 200 KNDISSHISQGKLGEIIRN--GYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           K  +   I   +L    R   G  +V ++G++N+GKSSL NA+A+ DV     +  T  D
Sbjct: 187 KEHLDEVIIHRELYRERRRMRGVPVVSLVGYTNSGKSSLLNAVARTDVLAENKLFATL-D 245

Query: 257 VLTIDLDLEGY-LVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             T  L + G   V ++DT G IR+    + K   + T  E+  ADL++ + +I +K   
Sbjct: 246 PTTRRLYINGLGNVLLTDTVGFIRKLPPAIVK-AFRATLEEINQADLLVHVVDITAKNAF 304

Query: 315 SFPKNIDFIF 324
              + ++ I 
Sbjct: 305 EQCQTVEKIL 314


>gi|297543778|ref|YP_003676080.1| ferrous iron transport protein B [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841553|gb|ADH60069.1| ferrous iron transport protein B [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 656

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G++N GKS +FN L      I+ + PG T +     L  +G  +KI D  GI    
Sbjct: 7   IALAGNANVGKSVIFNQLTGLT-QIIGNWPGKTVERAEGVLRFKGRTIKIVDLPGIYSLS 65

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
              ++E + R F+  E  D+++
Sbjct: 66  AYSQEEIVSREFIAFEKPDVVI 87


>gi|254718803|ref|ZP_05180614.1| GTP-binding protein Era [Brucella sp. 83/13]
 gi|265983785|ref|ZP_06096520.1| GTP-binding protein era [Brucella sp. 83/13]
 gi|306837523|ref|ZP_07470398.1| GTP-binding protein Era [Brucella sp. NF 2653]
 gi|306845264|ref|ZP_07477840.1| GTP-binding protein Era [Brucella sp. BO1]
 gi|264662377|gb|EEZ32638.1| GTP-binding protein era [Brucella sp. 83/13]
 gi|306274423|gb|EFM56230.1| GTP-binding protein Era [Brucella sp. BO1]
 gi|306407415|gb|EFM63619.1| GTP-binding protein Era [Brucella sp. NF 2653]
          Length = 311

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR  L   + +EG   + + DT 
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTR-ALVRGIFIEGPAQIVLVDTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305
           GI      +++  +   +   ++AD+IL++
Sbjct: 76  GIFRPKRRLDRAMVTTAWGGAKDADIILVI 105


>gi|188535084|ref|YP_001908881.1| putative GTPase HflX [Erwinia tasmaniensis Et1/99]
 gi|188030126|emb|CAO98012.1| GTP-binding protein HflX [Erwinia tasmaniensis Et1/99]
          Length = 426

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 39/257 (15%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +S    QG+      +   + ++G++NAGKS+LFN L   +V     +  T    L  +D
Sbjct: 181 VSKQREQGRQARNKADVPTVSLVGYTNAGKSTLFNRLTSAEVYAADQLFATLDPTLRRVD 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
           +   G +V ++DT G IR    D+V     K T  E   A L+L    I    ++   +N
Sbjct: 241 VADVGEVV-LADTVGFIRHLPHDLV--AAFKATLQETREAALLL---HIVDAADLRIEEN 294

Query: 320 IDFI---------------FIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELI 355
           ID +                +  K D+   +    D           +S+ TGEG+  L 
Sbjct: 295 IDAVNVVLEEIESDEIPSLLVMNKIDMLDGFVPRIDRDEENLPVRVWLSAQTGEGIPLLF 354

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
             +   L+ +  +    +P     L      ++ +E    NE+D  L +    +R+  + 
Sbjct: 355 QALTERLAGEIAQFELCLPPAAGRLRSRFYQLQAIE-KEWNEEDGSLGL---QVRMPIID 410

Query: 416 LGKITGCVDVEQLLDII 432
             ++  C    +L+D I
Sbjct: 411 WRRL--CKQEPELVDFI 425


>gi|223939366|ref|ZP_03631245.1| GTP-binding protein HSR1-related [bacterium Ellin514]
 gi|223891970|gb|EEF58452.1| GTP-binding protein HSR1-related [bacterium Ellin514]
          Length = 196

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 8/51 (15%)

Query: 225 LGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR--DVLTID-----LDLEGY 267
           +G SN GKSSL N LA +KD+A V+ +PG T+  +  TI+     +DL GY
Sbjct: 29  IGRSNVGKSSLVNLLAGRKDLARVSKVPGYTKLINFFTINKAWRLVDLPGY 79


>gi|163786092|ref|ZP_02180540.1| putative GTP-binding protein [Flavobacteriales bacterium ALC-1]
 gi|159877952|gb|EDP72008.1| putative GTP-binding protein [Flavobacteriales bacterium ALC-1]
          Length = 293

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 48/88 (54%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ + + V +SDT GI +    
Sbjct: 9   IIGNPNVGKSTLMNAFIGEKLSIITSKAQTTRHRILGIVNGDDFQVILSDTPGIIKPAYE 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311
           ++   +       E+AD+++ + EI  K
Sbjct: 69  LQTSMMDFVKSAFEDADVLIYMVEIGEK 96


>gi|149183162|ref|ZP_01861611.1| YqeH [Bacillus sp. SG-1]
 gi|148849145|gb|EDL63346.1| YqeH [Bacillus sp. SG-1]
          Length = 371

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R+G  + ++G +N GKS+  N +      +KD+   +  PGTT D++ I LD    L
Sbjct: 159 EQYRDGRSVYVVGCTNVGKSTFINRVIHHVTGEKDIITTSHFPGTTLDMIEIPLDDGEAL 218

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 219 I---DTPGI 224


>gi|30022378|ref|NP_834009.1| GTP-binding protein Era [Bacillus cereus ATCC 14579]
 gi|218232187|ref|YP_002369107.1| GTP-binding protein Era [Bacillus cereus B4264]
 gi|29897936|gb|AAP11210.1| GTP-binding protein [Bacillus cereus ATCC 14579]
 gi|218160144|gb|ACK60136.1| GTP-binding protein Era [Bacillus cereus B4264]
 gi|326942082|gb|AEA17978.1| GTP-binding protein Era [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 301

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   D
Sbjct: 3   RKGYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           T GI +    +    +K     ++  D++L +
Sbjct: 63  TPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFM 94


>gi|332022772|gb|EGI63045.1| DNA ligase 1 [Acromyrmex echinatior]
          Length = 914

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 48/190 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR----------DVLTIDLDLEGYL-- 268
           KI  LG  N GKS+L N L K+ +  V+    TT+          D   I +D  G +  
Sbjct: 55  KIAFLGAPNVGKSTLVNQLIKRSICPVSCKVHTTQTKAHAIYCEGDTQLIFMDTPGMVSL 114

Query: 269 -------------------VKISDTAGI-RETDDIVEKEGIKRTFLEVENAD------LI 302
                              + ++D  GI +  ++I  +  I    LE+   D      +I
Sbjct: 115 TESKKFKLADSFRKDQKTSLNMADIIGIVQNAENIYTRHKIDSNILELLTEDIKKKIPII 174

Query: 303 LLLKEIN--SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           L++ +++   KKEI     +DF++  TKS     + + +  +IS+ TG+G+++L  + + 
Sbjct: 175 LVINKVDRIKKKEIL----LDFVYTLTKSKKSPDFCDVF--MISALTGDGVDDL--RKEP 226

Query: 361 ILSNKFKKLP 370
             + K KK+P
Sbjct: 227 TPNKKAKKVP 236


>gi|307704298|ref|ZP_07641216.1| conserved hypothetical protein [Streptococcus mitis SK597]
 gi|307622134|gb|EFO01153.1| conserved hypothetical protein [Streptococcus mitis SK597]
          Length = 368

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N++ +     ++V   +  PGTT D + I LD   Y 
Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINSIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY- 216

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             I DT GI     +         +L  +N      LK ++ KKEI  PK 
Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251


>gi|254281726|ref|ZP_04956694.1| GTP-binding protein Era [gamma proteobacterium NOR51-B]
 gi|219677929|gb|EED34278.1| GTP-binding protein Era [gamma proteobacterium NOR51-B]
          Length = 300

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGI 277
           GY + I+G  N GKS+L N L  + ++I +  P TTR+ VL I  D    ++ + DT GI
Sbjct: 10  GY-VAIVGRPNVGKSTLLNYLLGQKISITSRKPQTTRNQVLGIKTDGNTQIIFV-DTPGI 67

Query: 278 RETDDIVEKEGIKRT-FLEVENADLILLLKEINSKKE 313
             ++       + RT    V + DL+L + + N   E
Sbjct: 68  HSSEPRAINRFMNRTAAAAVNDVDLVLQVCDRNRWTE 104


>gi|110834491|ref|YP_693350.1| GTP-binding protein Era-like protein [Alcanivorax borkumensis SK2]
 gi|110647602|emb|CAL17078.1| GTP-binding protein Era homolog [Alcanivorax borkumensis SK2]
          Length = 310

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G  N GKS+L N L  + V+I +  P TTR  +   L  + Y +  +DT GI
Sbjct: 20  VSIVGRPNVGKSTLMNHLIGQKVSITSRKPQTTRHRIHGILSRDNYQIVFADTPGI 75


>gi|282861802|ref|ZP_06270866.1| GTP-binding protein Era [Streptomyces sp. ACTE]
 gi|282563618|gb|EFB69156.1| GTP-binding protein Era [Streptomyces sp. ACTE]
          Length = 321

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 10/144 (6%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   + G  NAGKS+L NAL    VAI ++ P TTR  +   +      + + DT G
Sbjct: 21  RAGFACFV-GRPNAGKSTLTNALVGSKVAITSNRPQTTRHTVRGIVHRSDAQLILVDTPG 79

Query: 277 IRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEISFPKNIDFIFIGT 327
           + +   ++ +   + ++ T+ EV+       AD  L   +    KE++  +    I I T
Sbjct: 80  LHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKFIVKELAGIRKTPKIAIIT 139

Query: 328 KSDLYSTYTEEYDHLISSFTGEGL 351
           K+DL  + T     L  S  GE L
Sbjct: 140 KTDLVDSKTLAEQLLAVSRLGEEL 163


>gi|262184631|ref|ZP_06044052.1| GTP-binding protein Era [Corynebacterium aurimucosum ATCC 700975]
          Length = 331

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  E   + + D
Sbjct: 31  EGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHPIRGLVHREDAQIVLVD 89

Query: 274 TAGIRETDDIVEK---EGIKRTFLEVE 297
           T G+     ++ +   E +K T+ +V+
Sbjct: 90  TPGLHRPRTLLGERLNEVVKDTYADVD 116


>gi|216263714|ref|ZP_03435709.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia afzelii
           ACA-1]
 gi|215980558|gb|EEC21379.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia afzelii
           ACA-1]
          Length = 279

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKSS+ N L+ K  A V + PG T+++  + ++ E   + + D  GI   
Sbjct: 119 KVLIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKINEE---INLFDMPGILWH 175

Query: 281 DDIVEKEGIKRTFLE------VENADLILLLKEI 308
           + + +    K   L+      V+N DL L L EI
Sbjct: 176 NLVDQSIAKKLAILDMIKNEIVDNTDLALYLLEI 209


>gi|170725605|ref|YP_001759631.1| GTP-binding protein Era [Shewanella woodyi ATCC 51908]
 gi|169810952|gb|ACA85536.1| GTP-binding protein Era [Shewanella woodyi ATCC 51908]
          Length = 329

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 11/107 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           N  S+  L+D+L   N+ SS        ++   G  + I+G  N GKS+L N L  + ++
Sbjct: 7   NSKSEPSLDDLLAQMNNPSSAAKY----DVTYCGM-VAIVGRPNVGKSTLLNNLLGQKIS 61

Query: 246 IVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           I +  P TTR  ++ I  D E  +V I DT G+     I EK  I R
Sbjct: 62  ITSKKPQTTRHRIMGIHTDAERQVVFI-DTPGLH----IEEKRAINR 103


>gi|302342153|ref|YP_003806682.1| GTP-binding protein Era [Desulfarculus baarsii DSM 2075]
 gi|301638766|gb|ADK84088.1| GTP-binding protein Era [Desulfarculus baarsii DSM 2075]
          Length = 296

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+  N +    +AI +D P TTR  L    + E   +   DT G+ +  
Sbjct: 6   VAIVGPPNAGKSTFLNHVLGFKLAITSDKPQTTRHRLLGVCNREESQIVFLDTPGLHKPM 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
             + K  ++     +++ + +L + E ++K
Sbjct: 66  RALNKLMVRTAMAALQDVEAVLFMVEASAK 95


>gi|269104691|ref|ZP_06157387.1| 50S ribosomal subunit maturation GTPase RbgA [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161331|gb|EEZ39828.1| 50S ribosomal subunit maturation GTPase RbgA [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 305

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS++ N LA + VA+  + P  TR    I+L   G +  +SDT GI
Sbjct: 109 RTMIMGIPNVGKSTIINTLAGRKVAVTGNQPAVTRQQQRINLQ-NGIV--LSDTPGI 162


>gi|261418494|ref|YP_003252176.1| GTP-binding protein Era [Geobacillus sp. Y412MC61]
 gi|297529346|ref|YP_003670621.1| GTP-binding protein Era [Geobacillus sp. C56-T3]
 gi|319767545|ref|YP_004133046.1| GTP-binding protein Era [Geobacillus sp. Y412MC52]
 gi|261374951|gb|ACX77694.1| GTP-binding protein Era [Geobacillus sp. Y412MC61]
 gi|297252598|gb|ADI26044.1| GTP-binding protein Era [Geobacillus sp. C56-T3]
 gi|317112411|gb|ADU94903.1| GTP-binding protein Era [Geobacillus sp. Y412MC52]
          Length = 302

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 26/179 (14%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKIS 272
           + GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +  +  D +  ++ I 
Sbjct: 3   KEGYKSGFVAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDDAQIIFI- 61

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP--- 317
           DT G+ +    +    +K     +   DLIL +              I   KE+  P   
Sbjct: 62  DTPGVHKPKHKLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLKEVDTPVFL 121

Query: 318 --KNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLP 370
               ID +       L   Y + Y       IS+  G  ++ L+ +IK  L    +  P
Sbjct: 122 VINKIDRVHPDELLPLIDRYKDLYPFAEIVPISALEGNNVDRLLEQIKERLPEGPQYYP 180


>gi|156975791|ref|YP_001446698.1| GTP-binding protein Era [Vibrio harveyi ATCC BAA-1116]
 gi|156527385|gb|ABU72471.1| hypothetical protein VIBHAR_03535 [Vibrio harveyi ATCC BAA-1116]
          Length = 320

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  + + +D EG Y     DT G+   
Sbjct: 29  IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRI-MGVDTEGDYQAIYVDTPGLH-- 85

Query: 281 DDIVEKEGIKRTFLEVENADL 301
             I EK  I R      N+ L
Sbjct: 86  --IEEKRAINRLMNRAANSSL 104


>gi|156743087|ref|YP_001433216.1| small GTP-binding protein [Roseiflexus castenholzii DSM 13941]
 gi|156234415|gb|ABU59198.1| small GTP-binding protein [Roseiflexus castenholzii DSM 13941]
          Length = 454

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 33/194 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G++NAGKS+L NAL+  +V     +   +  TTR V        G  + ++DT G 
Sbjct: 227 VAIVGYTNAGKSTLLNALSGANVRAEDRLFATLDPTTRQVTLPG----GQQILLTDTVGF 282

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEIN---------------------SKKEISF 316
            +          + T  E+  AD++L + +I                       +  ++ 
Sbjct: 283 IQKLPTHLVAAFRATLEEIREADVVLHVLDITHPNAAQQTQTVLDTLRDLQVEDRPTLTV 342

Query: 317 PKNIDFIFIGTKSDLYS---TYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              +D +    ++++ S   T     D++ +S+  G GL+ L+ +I+  LS +   L   
Sbjct: 343 LNKVDLMVGINEAEVGSIAETLGMPDDYVAVSARKGWGLDTLLRRIEQTLSERMMPLTAL 402

Query: 373 IPSHKRHLYHLSQT 386
           IP  +  L  L  T
Sbjct: 403 IPYRRNDLVSLWHT 416


>gi|85708366|ref|ZP_01039432.1| GTPase [Erythrobacter sp. NAP1]
 gi|85689900|gb|EAQ29903.1| GTPase [Erythrobacter sp. NAP1]
          Length = 302

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280
           + ++G  NAGKS+L N L  + VAI +    TTR  + + + L G +  I  DT GI   
Sbjct: 13  VAVIGAPNAGKSTLVNQLVGQKVAITSAKAQTTRARM-LGIALHGSVQMILVDTPGIFAP 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
              +++  +   +   E+AD +LL+
Sbjct: 72  KRRLDRAMVSAAWEGAESADAVLLI 96


>gi|30264370|ref|NP_846747.1| GTP-binding protein Era [Bacillus anthracis str. Ames]
 gi|47529821|ref|YP_021170.1| GTP-binding protein Era [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187195|ref|YP_030447.1| GTP-binding protein Era [Bacillus anthracis str. Sterne]
 gi|65321672|ref|ZP_00394631.1| COG1159: GTPase [Bacillus anthracis str. A2012]
 gi|165872076|ref|ZP_02216716.1| GTP-binding protein Era [Bacillus anthracis str. A0488]
 gi|167634499|ref|ZP_02392819.1| GTP-binding protein Era [Bacillus anthracis str. A0442]
 gi|167638699|ref|ZP_02396975.1| GTP-binding protein Era [Bacillus anthracis str. A0193]
 gi|170687400|ref|ZP_02878617.1| GTP-binding protein Era [Bacillus anthracis str. A0465]
 gi|170707479|ref|ZP_02897933.1| GTP-binding protein Era [Bacillus anthracis str. A0389]
 gi|177653279|ref|ZP_02935531.1| GTP-binding protein Era [Bacillus anthracis str. A0174]
 gi|190566974|ref|ZP_03019890.1| GTP-binding protein Era [Bacillus anthracis Tsiankovskii-I]
 gi|227817076|ref|YP_002817085.1| GTP-binding protein Era [Bacillus anthracis str. CDC 684]
 gi|229602326|ref|YP_002868589.1| GTP-binding protein Era [Bacillus anthracis str. A0248]
 gi|254684057|ref|ZP_05147917.1| GTP-binding protein Era [Bacillus anthracis str. CNEVA-9066]
 gi|254736405|ref|ZP_05194111.1| GTP-binding protein Era [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741443|ref|ZP_05199130.1| GTP-binding protein Era [Bacillus anthracis str. Kruger B]
 gi|254750881|ref|ZP_05202920.1| GTP-binding protein Era [Bacillus anthracis str. Vollum]
 gi|254757791|ref|ZP_05209818.1| GTP-binding protein Era [Bacillus anthracis str. Australia 94]
 gi|30259028|gb|AAP28233.1| GTP-binding protein Era [Bacillus anthracis str. Ames]
 gi|47504969|gb|AAT33645.1| GTP-binding protein Era [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181122|gb|AAT56498.1| GTP-binding protein Era [Bacillus anthracis str. Sterne]
 gi|164712207|gb|EDR17744.1| GTP-binding protein Era [Bacillus anthracis str. A0488]
 gi|167513547|gb|EDR88917.1| GTP-binding protein Era [Bacillus anthracis str. A0193]
 gi|167529951|gb|EDR92686.1| GTP-binding protein Era [Bacillus anthracis str. A0442]
 gi|170127723|gb|EDS96596.1| GTP-binding protein Era [Bacillus anthracis str. A0389]
 gi|170668595|gb|EDT19341.1| GTP-binding protein Era [Bacillus anthracis str. A0465]
 gi|172081561|gb|EDT66633.1| GTP-binding protein Era [Bacillus anthracis str. A0174]
 gi|190561965|gb|EDV15934.1| GTP-binding protein Era [Bacillus anthracis Tsiankovskii-I]
 gi|227004139|gb|ACP13882.1| GTP-binding protein Era [Bacillus anthracis str. CDC 684]
 gi|229266734|gb|ACQ48371.1| GTP-binding protein Era [Bacillus anthracis str. A0248]
          Length = 301

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   D
Sbjct: 3   RKGYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           T GI +    +    +K     ++  D++L +
Sbjct: 63  TPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFM 94


>gi|294461092|gb|ADE76113.1| unknown [Picea sitchensis]
          Length = 335

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 22/140 (15%)

Query: 208 SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDV--LTID-- 261
           S  ++ E   NGY +  ++G SN GKSSL N+L  +K +A+ +  PG T+ +    I+  
Sbjct: 140 SSSRVEECPMNGYPEFALVGRSNVGKSSLVNSLVRRKQLAMTSKKPGKTQLINHFLINNS 199

Query: 262 ---LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-------KEINSK 311
              +DL GY   I+  A   E +        K  FL  +    +LLL       KEI+ +
Sbjct: 200 WYLVDLPGYGYAIAPRAVRTEWNAFT-----KDYFLNRKALVCVLLLIDASIPAKEIDIE 254

Query: 312 KEISFPKN-IDFIFIGTKSD 330
                 +N I   F+ TK D
Sbjct: 255 CATWLGQNQIPMAFVFTKCD 274


>gi|284044305|ref|YP_003394645.1| GTP-binding protein Era [Conexibacter woesei DSM 14684]
 gi|283948526|gb|ADB51270.1| GTP-binding protein Era [Conexibacter woesei DSM 14684]
          Length = 300

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + + G  N GKS+L NA+    VAIV+D P TTR  +        + + + D  G
Sbjct: 10  RSGF-VALAGRPNVGKSTLTNAIVGAKVAIVSDKPQTTRRAIRGVRTTPDHQLILVDLPG 68

Query: 277 IRETDDIV 284
           ++   D++
Sbjct: 69  VQRPRDVL 76


>gi|227885227|ref|ZP_04003032.1| GTPase [Escherichia coli 83972]
 gi|227837753|gb|EEJ48219.1| GTPase [Escherichia coli 83972]
 gi|307556524|gb|ADN49299.1| putative GTPase [Escherichia coli ABU 83972]
          Length = 294

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSHLTFLPEEIRQKILE-HLRSVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + G TR    + L L    + + D  GI ET
Sbjct: 68  PLNGCTRQAHHLTLQLGERRMTLVDLPGIGET 99


>gi|225559079|gb|EEH07362.1| nucleolar GTP-binding protein [Ajellomyces capsulatus G186AR]
          Length = 565

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 324 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLI---DCPG 380

Query: 277 -IRETDDIVEKEGIKRTFLEVENAD 300
            +  +++  E++ + R  + VEN +
Sbjct: 381 VVPPSNNDTEEDILLRGVVRVENVE 405


>gi|225551797|ref|ZP_03772740.1| GTP-binding protein Era [Borrelia sp. SV1]
 gi|225371592|gb|EEH01019.1| GTP-binding protein Era [Borrelia sp. SV1]
          Length = 290

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 21/144 (14%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGI---R 278
            ILG  + GKS+L N++    ++I++ IP TTR+ +  I  D  G ++ I DT G    +
Sbjct: 7   AILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFI-DTPGFHLSK 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKN--IDFIFIGTKSD 330
           +  +I   + I  +  EVE   LIL + +I  K      K +   KN  I F+ I  K D
Sbjct: 66  KKFNIAMMKNIHSSIGEVE---LILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILNKID 122

Query: 331 LYSTYTEEYDHLISSFTGE-GLEE 353
           L +T  +E    I+ F  E G+E+
Sbjct: 123 LKNTKIKE----ITQFLKEKGIED 142


>gi|57234501|ref|YP_181472.1| GTP-binding protein, putative [Dehalococcoides ethenogenes 195]
 gi|57224949|gb|AAW40006.1| GTP-binding protein, putative [Dehalococcoides ethenogenes 195]
          Length = 380

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 11/190 (5%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E Q ++ +  M   L  L GQW    +H+             E       + +   I  L
Sbjct: 109 EGQLQVELAQMQYILPRLAGQW----SHLERLGGGIGTRGPGESQLETDKRIIRTKIRNL 164

Query: 200 K---NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +   +D+++H    +    +R    + ++G++N+GKSSL NA+ K DV     +  T  D
Sbjct: 165 QEQLDDVTTHRDLYRERRRMRGVPVVSLVGYTNSGKSSLLNAVVKADVLAENKLFATL-D 223

Query: 257 VLTIDLDLEGY-LVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             T  + + G   V ++DT G IR+    + K   + T  E+  ADL++ + +I +K   
Sbjct: 224 PTTRRMYINGLGNVLLTDTVGFIRKLPPAIVK-AFRATLEEINQADLLVHVVDITAKNAF 282

Query: 315 SFPKNIDFIF 324
              + ++ I 
Sbjct: 283 EQCQTVEKIL 292


>gi|330799251|ref|XP_003287660.1| hypothetical protein DICPUDRAFT_151784 [Dictyostelium purpureum]
 gi|325082338|gb|EGC35823.1| hypothetical protein DICPUDRAFT_151784 [Dictyostelium purpureum]
          Length = 1674

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 221  KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            ++  +G SN GKSSL NAL ++ +A  +D PG T+ +   ++    YLV
Sbjct: 1461 EVAFIGRSNVGKSSLINALTQRGMAKTSDKPGFTQSINWYEIGSTLYLV 1509


>gi|311898744|dbj|BAJ31152.1| putative GTP-binding protein [Kitasatospora setae KM-6054]
          Length = 499

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 21/173 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I G++NAGKSSL N L    V +   +  T    +       G L  ++DT G +R  
Sbjct: 280 VAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRAETPSGRLYTLADTVGFVRHL 339

Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISF---PKNIDFIFIGTK 328
              +  E  + T  EV +ADLIL +          ++ + +E+      +N+  I +  K
Sbjct: 340 PHHL-VEAFRSTMEEVGDADLILHVVDGSHPEPETQLAAVREVIVSVDAQNVPEIVVINK 398

Query: 329 SDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +D             E +  ++S+ +G+G+EEL+  I   L +   ++   +P
Sbjct: 399 ADAADPLVLQRLLRREPHAIVVSARSGQGIEELLALIDRELPHPAVEVTVLVP 451


>gi|225010005|ref|ZP_03700477.1| GTP-binding protein Era [Flavobacteria bacterium MS024-3C]
 gi|225005484|gb|EEG43434.1| GTP-binding protein Era [Flavobacteria bacterium MS024-3C]
          Length = 295

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 48/88 (54%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +    
Sbjct: 11  IIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGEDFQMILSDTPGIIKPAYE 70

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311
           ++   +       E+AD+++ + E+  K
Sbjct: 71  LQASMMDFVKSAFEDADILVYMVELGEK 98


>gi|222085391|ref|YP_002543921.1| GTP-binding protein Era [Agrobacterium radiobacter K84]
 gi|221722839|gb|ACM25995.1| GTP-binding protein Era [Agrobacterium radiobacter K84]
          Length = 327

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 37  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 96

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             +++  +   +   ++ADLI+LL  I+S++ I
Sbjct: 97  RRLDRAMVTSAWGGAKDADLIMLL--IDSERGI 127


>gi|66356490|ref|XP_625423.1| Yer006wp-like. Yjeq GTpase [Cryptosporidium parvum Iowa II]
 gi|46226452|gb|EAK87452.1| Yer006wp-like. Yjeq GTpase [Cryptosporidium parvum Iowa II]
          Length = 478

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G+ N GKSSL N+L +     V  + G TR +  IDLD    L+   D+ G+  T 
Sbjct: 289 IGVMGYPNVGKSSLINSLKRGYCVKVGAVAGVTRHLQRIDLDSTTKLI---DSPGVVFTG 345

Query: 282 DIVEKEGIKRTFLEVENAD-----LILLLKEIN 309
           +  +   + R  +++ N       + LLL++I+
Sbjct: 346 NSQDPSQVLRNTVQLTNVKDYFEPISLLLQKID 378


>gi|304437031|ref|ZP_07396994.1| ribosome biogenesis GTP-binding protein YsxC [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369982|gb|EFM23644.1| ribosome biogenesis GTP-binding protein YsxC [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 207

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 22/130 (16%)

Query: 222 IVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDV------LTIDLDLEGYLVKISDT 274
           +  +G SN GKSSL N+L + + +A V+  PG T+ +      + ID   E + V + D 
Sbjct: 30  VAFIGRSNVGKSSLINSLTRIRQLAHVSGKPGKTQTINFYELLMRIDGGEERHPVHLVDL 89

Query: 275 AGI------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNI 320
            G       RE+     K  I+  FL  EN   + LL +I            E     +I
Sbjct: 90  PGYGYAKAARESRKTWAK-FIEEYFLHAENLHFVCLLLDIRHAPMPSDRKMFEWLVSHDI 148

Query: 321 DFIFIGTKSD 330
             + I TK+D
Sbjct: 149 PVLVIATKAD 158


>gi|296876213|ref|ZP_06900267.1| GTP-binding protein HflX [Streptococcus parasanguinis ATCC 15912]
 gi|296432924|gb|EFH18717.1| GTP-binding protein HflX [Streptococcus parasanguinis ATCC 15912]
          Length = 415

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 24/197 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNQLTSKSQYEADELFATL-DATTKSIHLTGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDFIFIG----- 326
           +          K T  E +N DL++ +        E + K  +S  K++D + I      
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLVHVIDASDPNHEEHEKTVLSIMKDLDMLEIPRLTLY 317

Query: 327 TKSDLYSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKL--PFSI--PSHKRHL 380
            K+D  + +T       LIS+ +    E+L    +++L  K ++L  PF+I  P  K + 
Sbjct: 318 NKADKVADFTPTQTPFSLISARSETAREDL----QALLLEKLRELFVPFTIRVPFSKSYR 373

Query: 381 YHLSQTVRYLEMASLNE 397
            H  +TV  ++     E
Sbjct: 374 THDLETVAIIDQREFEE 390


>gi|302345899|ref|YP_003814252.1| GTP-binding protein Era [Prevotella melaninogenica ATCC 25845]
 gi|302149370|gb|ADK95632.1| GTP-binding protein Era [Prevotella melaninogenica ATCC 25845]
          Length = 293

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ E   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTEDTQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  ++ +   + +AD++L + ++    E    KN+DF+
Sbjct: 69  MQEMMLQFSESALADADILLYVTDVVEDPE----KNMDFL 104


>gi|254428300|ref|ZP_05042007.1| GTP-binding protein Era [Alcanivorax sp. DG881]
 gi|196194469|gb|EDX89428.1| GTP-binding protein Era [Alcanivorax sp. DG881]
          Length = 292

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G  N GKS+L N L  + V+I +  P TTR  +   L  + Y +  +DT GI
Sbjct: 2   VSIVGRPNVGKSTLMNHLIGQKVSITSRKPQTTRHRIHGILSRDNYQIIFADTPGI 57


>gi|223889472|ref|ZP_03624058.1| GTP-binding protein Era [Borrelia burgdorferi 64b]
 gi|223885158|gb|EEF56262.1| GTP-binding protein Era [Borrelia burgdorferi 64b]
          Length = 290

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 21/144 (14%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGI---R 278
            ILG  + GKS+L N++    ++I++ IP TTR+ +  I  D  G ++ I DT G    +
Sbjct: 7   AILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFI-DTPGFHLSK 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKN--IDFIFIGTKSD 330
           +  +I   + I  +  EVE   LIL + +I  K      K +   KN  I F+ I  K D
Sbjct: 66  KKFNIAMMKNIHSSIGEVE---LILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILNKID 122

Query: 331 LYSTYTEEYDHLISSFTGE-GLEE 353
           L +T  +E    I+ F  E G+E+
Sbjct: 123 LKNTKIKE----ITQFLKEKGIED 142


>gi|193215248|ref|YP_001996447.1| ribosome small subunit-dependent GTPase A [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088725|gb|ACF14000.1| ribosome small subunit-dependent GTPase A [Chloroherpeton
           thalassium ATCC 35110]
          Length = 334

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 39/127 (30%)

Query: 175 DLDFSEE--EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKI-VILGHSNA 230
           DL+ SEE   DV+ +        +L  K+ + S ++   + E+ R  G KI V  GHS  
Sbjct: 154 DLEHSEELAGDVEIYR-------LLGYKSLLVSSVTGMGMDELRRELGQKISVFTGHSGV 206

Query: 231 GKSSLFNALAKKDV------------------AIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           GKS+L NAL  +D+                  A++  IPG TRD +       GY++   
Sbjct: 207 GKSALINALTGEDLRIGDVSQKSLKGAHTTSNAVMLSIPGKTRDDV-------GYVI--- 256

Query: 273 DTAGIRE 279
           DT GIRE
Sbjct: 257 DTPGIRE 263


>gi|156084706|ref|XP_001609836.1| elongation factor Tu GTP binding domain containing protein [Babesia
           bovis]
 gi|154797088|gb|EDO06268.1| elongation factor Tu GTP binding domain containing protein [Babesia
           bovis]
          Length = 995

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 29/168 (17%)

Query: 201 NDISSHISQGKLGEI--------IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           NDI  H+ Q +L E+        +     +V++GH N GK++LF+ L   +   + D PG
Sbjct: 461 NDIDKHVQQKELEELKGKCEVICLERPPVVVLMGHINHGKTALFDMLTGTNN--IQDEPG 518

Query: 253 ----TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE- 307
               T R   T D       + + DT G  E  D + + G     + +   D I  LKE 
Sbjct: 519 QITQTVRSFTTTD----KCPMTVIDTPG-HEVFDAMRRCGATIADIALIVIDSIEGLKEQ 573

Query: 308 ----INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
               I   K +S P    FI   TK DL + Y ++ + L    T EG+
Sbjct: 574 TIECIKLCKSLSIP----FIIAATKCDLPNAY-DKTEELAMRLTEEGV 616


>gi|34541717|ref|NP_906196.1| GTP-binding protein Era [Porphyromonas gingivalis W83]
 gi|34398035|gb|AAQ67095.1| GTP-binding protein Era [Porphyromonas gingivalis W83]
          Length = 299

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 60/109 (55%), Gaps = 9/109 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G+ N GKS+L N L  + ++I+T    TTR  +   ++     +  SDT G
Sbjct: 9   RSGF-VNIVGNPNVGKSTLINLLVGERISIITSKAQTTRHRIMGIVNTPEMQIVYSDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLE--VENADLILLLKEINSKKEISFPKNIDFI 323
           +   +  +++E   R F E  + +AD+++ + ++  K +    KN DF+
Sbjct: 68  VLRPNYKLQQE--MREFSESALGDADVLVYVTDVVEKAD----KNADFL 110


>gi|18977370|ref|NP_578727.1| GTP-binding protein [Pyrococcus furiosus DSM 3638]
 gi|18893053|gb|AAL81122.1| hypothetical GTP-binding protein homolog [Pyrococcus furiosus DSM
           3638]
          Length = 355

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI +   K+ ++G+ N GKS++ N L  K       IPG T+    I L    +L+   D
Sbjct: 98  EIDKEKVKVALIGYPNVGKSTIINVLKGKHAVGTAPIPGYTKGKQLIRLTKRIWLL---D 154

Query: 274 TAGIRETDDIVE 285
           T G+   DD  E
Sbjct: 155 TPGVVPIDDFDE 166


>gi|322382567|ref|ZP_08056447.1| ribosomal biogenesis GTPase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153483|gb|EFX45888.1| ribosomal biogenesis GTPase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 284

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 8/110 (7%)

Query: 173 EADLDFSEEEDVQ----NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGH 227
           EA + F E+E ++    + +S   + DI+    +++SH  + ++ + I+    + +I+G 
Sbjct: 60  EAWVAFFEKETLKALPIDAASGFQVKDIIPRCKELASHKIEAQIQKGIKPRPVRALIVGI 119

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            N GKS+L N LA K +A   D PG T+    I +   G  + + DT GI
Sbjct: 120 PNVGKSTLINQLAGKKIAATGDRPGITKGQQWIKV---GKEMDLLDTPGI 166


>gi|320161098|ref|YP_004174322.1| GTP-binding protein [Anaerolinea thermophila UNI-1]
 gi|319994951|dbj|BAJ63722.1| GTP-binding protein [Anaerolinea thermophila UNI-1]
          Length = 451

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 23/184 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G++NAGKS+L N LA  +V  V D    T D  T  ++L  G+L   +DT G  + 
Sbjct: 221 VALVGYTNAGKSTLLNRLANAEV-YVADQLFATLDPTTRRVELPGGHLALFTDTVGFIQK 279

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT--EE 338
                    + T  E+  ADL+L + +I         + +       ++D     T   +
Sbjct: 280 LPTQLVAAFRATLEEIAEADLLLHVVDITHPNAFEQAQAVHATLKEIQADHIPVITLLNK 339

Query: 339 YDHL-------------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            D L                   IS+  G G+ E++  +   L   ++ +   IP  + +
Sbjct: 340 IDRLPDPKAAEEAIAYFSGSVLAISALKGMGINEMLTLVNQELFETYQPVKVRIPYQEGN 399

Query: 380 LYHL 383
           L  L
Sbjct: 400 LISL 403


>gi|253580801|ref|ZP_04858064.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847871|gb|EES75838.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 302

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 3/97 (3%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVK 270
           + E  ++G+ + I+G  N GKS+L N L  + +AI +  P TTR+ + T+    EG +V 
Sbjct: 1   MNENFKSGF-VAIIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTCDEGQIVF 59

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           + DT GI +  + + +  ++     ++  D I+ L E
Sbjct: 60  L-DTPGIHKAKNKLGEYMVQVAERTLKEVDAIMWLVE 95


>gi|240282000|gb|EER45503.1| nucleolar GTP-binding protein [Ajellomyces capsulatus H143]
 gi|325088138|gb|EGC41448.1| nucleolar GTP-binding protein [Ajellomyces capsulatus H88]
          Length = 565

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 324 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLI---DCPG 380

Query: 277 -IRETDDIVEKEGIKRTFLEVENAD 300
            +  +++  E++ + R  + VEN +
Sbjct: 381 VVPPSNNDTEEDILLRGVVRVENVE 405


>gi|297566661|ref|YP_003685633.1| GTP-binding proten HflX [Meiothermus silvanus DSM 9946]
 gi|296851110|gb|ADH64125.1| GTP-binding proten HflX [Meiothermus silvanus DSM 9946]
          Length = 555

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 40/175 (22%)

Query: 217 RNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VK 270
           R+G  +V ++G++NAGK++L  ALAK   A    +  T R      L   G++     V 
Sbjct: 374 RSGLPVVAVVGYTNAGKTTLMQALAKNGDAGENKLFATLR-----PLTRRGFVPGVGEVL 428

Query: 271 ISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL---------------LLKEINSKKE 313
            +DT G IR   +++V  E  + T  E+  ADL+L               +++E+  + E
Sbjct: 429 YTDTVGFIRHMPEELV--EAFRSTLEELREADLLLHVLDASSEGALERHAVVEELLGRLE 486

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEY--DHL----ISSFTGEGLEELINKIKSIL 362
           +  P+    + +  K+D    Y  E+  + L    +S+ +G GL +L  +I + L
Sbjct: 487 VEVPR----VLVLAKADRAGGYDLEFIQERLGGISVSALSGAGLPQLKEQIAARL 537


>gi|303288596|ref|XP_003063586.1| chloroplast envelope protein translocase family [Micromonas pusilla
           CCMP1545]
 gi|226454654|gb|EEH51959.1| chloroplast envelope protein translocase family [Micromonas pusilla
           CCMP1545]
          Length = 827

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I++LG S  GKSS  N+L  +D A  +     T+ V  I+  + G  +++ DT G++ + 
Sbjct: 267 ILLLGKSGVGKSSTINSLLGRDSATASAFDAETKSVRVIEHKMHGMTLRLIDTPGLQPSA 326

Query: 282 DIVEKE----GIKRTFLEVENADLILLLKEIN 309
             ++      G  + F +    D++L    ++
Sbjct: 327 SDIQYNSRIMGEAKRFTKKHKPDIVLYFDRMD 358


>gi|220912720|ref|YP_002488029.1| GTP-binding protein Era [Arthrobacter chlorophenolicus A6]
 gi|219859598|gb|ACL39940.1| GTP-binding protein Era [Arthrobacter chlorophenolicus A6]
          Length = 319

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           R G+  V++G  NAGKS+L NAL  K VAI +  P TTR
Sbjct: 17  RAGFS-VLVGRPNAGKSTLTNALVGKKVAITSAKPQTTR 54


>gi|86606241|ref|YP_475004.1| GTP-binding protein [Synechococcus sp. JA-3-3Ab]
 gi|86554783|gb|ABC99741.1| GTP-binding protein [Synechococcus sp. JA-3-3Ab]
          Length = 588

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + ++G++NAGKS+L NAL +  V  V D    T D  T  L+L G   V ++DT G    
Sbjct: 413 VALVGYTNAGKSTLLNALTQAQV-YVADQLFATLDPTTRRLELPGQQAVLLTDTVGF--L 469

Query: 281 DDIVEK--EGIKRTFLEVENADLIL 303
            ++ E+  E  + T  EV  AD +L
Sbjct: 470 TELPEQLVEAFQATLEEVTEADALL 494


>gi|314933486|ref|ZP_07840851.1| GTP-binding protein HflX [Staphylococcus caprae C87]
 gi|313653636|gb|EFS17393.1| GTP-binding protein HflX [Staphylococcus caprae C87]
          Length = 411

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +K++   T  P T +    I ++ EG+ + ISDT
Sbjct: 205 FQVALVGYTNAGKSSWFNVLANEETYEKNLLFATLDPKTRQ----IQIN-EGFNLIISDT 259

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E ++A+L+L
Sbjct: 260 VGFIQKLPTTLVAAFKSTLEEAKDANLLL 288


>gi|303232718|ref|ZP_07319403.1| ribosome biogenesis GTP-binding protein YsxC [Atopobium vaginae
           PB189-T1-4]
 gi|302481204|gb|EFL44279.1| ribosome biogenesis GTP-binding protein YsxC [Atopobium vaginae
           PB189-T1-4]
          Length = 195

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 12/121 (9%)

Query: 221 KIVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTRDV--LTID----LDLEGY-LVKIS 272
           ++V  G SN GKSSL N  L +K +A V+  PG T ++    +D    +DL GY   K+S
Sbjct: 27  EVVFCGRSNVGKSSLLNKLLGRKALARVSSQPGKTANINFFNVDGVRFIDLPGYGFAKVS 86

Query: 273 DTAGIRETDDIVEKEGIKRTF-LEVENADLILLLKEINSKKEISFPKN--IDFIFIGTKS 329
            T   R  D I       R+F L +   D+ +  +E++    I F K+  I F+   TK+
Sbjct: 87  KTERSRWADLISGYFDQNRSFNLVISLVDIRIDAQELDMHM-IDFLKDAAIPFVVAFTKA 145

Query: 330 D 330
           D
Sbjct: 146 D 146


>gi|270291317|ref|ZP_06197539.1| GTP-binding protein Era [Pediococcus acidilactici 7_4]
 gi|304385067|ref|ZP_07367413.1| GTP-binding protein Era [Pediococcus acidilactici DSM 20284]
 gi|270280163|gb|EFA25999.1| GTP-binding protein Era [Pediococcus acidilactici 7_4]
 gi|304329261|gb|EFL96481.1| GTP-binding protein Era [Pediococcus acidilactici DSM 20284]
          Length = 304

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 44/91 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +  + VAI++D+P TTR+ +      +   +   DT GI +  
Sbjct: 13  VAIVGRPNVGKSTFLNYVVGQKVAIMSDVPQTTRNKIQGIYTTDREQIVFIDTPGIHKAH 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           + +    ++     +   D ++ +   + K+
Sbjct: 73  NKLGDFMVQSAISSLNEVDAVMFMVNADQKR 103


>gi|182438802|ref|YP_001826521.1| GTP-binding protein Era [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178467318|dbj|BAG21838.1| putative Era/ThdF-family GTP-binding protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 324

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 10/139 (7%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           S  +Q +     R G+   + G  NAGKS+L NAL  + VAI ++ P TTR  +   +  
Sbjct: 12  SAAAQAETTSPHRAGFACFV-GRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHR 70

Query: 265 EGYLVKISDTAGIRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEIS 315
           +   + + DT G+ +   ++ +   + ++ T+ EV+       AD  L   +    KE++
Sbjct: 71  DDAQLILVDTPGLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKYIVKELA 130

Query: 316 FPKNIDFIFIGTKSDLYST 334
             K    I I TK+DL  +
Sbjct: 131 GIKKTPKIAIITKTDLVES 149


>gi|167758496|ref|ZP_02430623.1| hypothetical protein CLOSCI_00836 [Clostridium scindens ATCC 35704]
 gi|167663692|gb|EDS07822.1| hypothetical protein CLOSCI_00836 [Clostridium scindens ATCC 35704]
          Length = 729

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 12/93 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VK 270
           ++ G KI + G+ N+GK++LFNAL   +   V + PG T +        EG L     V 
Sbjct: 1   MKMGVKIALAGNPNSGKTTLFNALTGSN-QFVGNWPGVTVE------KKEGRLKDDKDVT 53

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           ++D  GI        +E + R +L  +  D IL
Sbjct: 54  VTDLPGIYSLSPYTLEEVVARNYLISQRPDAIL 86


>gi|268611990|ref|ZP_06145717.1| GTP-binding protein [Ruminococcus flavefaciens FD-1]
          Length = 297

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 16/62 (25%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G +NAGKSSL NA+  + +A V+  P TTR  +T                GIR  D
Sbjct: 7   VTIAGRTNAGKSSLLNAIVGEKIASVSSKPQTTRTRIT----------------GIRNID 50

Query: 282 DI 283
           D+
Sbjct: 51  DV 52


>gi|255578453|ref|XP_002530091.1| conserved hypothetical protein [Ricinus communis]
 gi|223530402|gb|EEF32290.1| conserved hypothetical protein [Ricinus communis]
          Length = 697

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTD-----IPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  NAGKS+L NA AKK+ A ++      +PGTT  +L I   L     K+ DT G
Sbjct: 433 VWVIGAQNAGKSTLINAFAKKEGAKISKLTEAPVPGTTLGILRIGGILSAK-AKMYDTPG 491

Query: 277 I 277
           +
Sbjct: 492 L 492


>gi|154499901|ref|ZP_02037939.1| hypothetical protein BACCAP_03558 [Bacteroides capillosus ATCC
           29799]
 gi|150271499|gb|EDM98756.1| hypothetical protein BACCAP_03558 [Bacteroides capillosus ATCC
           29799]
          Length = 793

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           YKI + G+ N GK++LFNAL       V + PG T  V   +  L+G+  V I D  GI 
Sbjct: 3   YKIALAGNPNCGKTTLFNALTGSS-QYVGNWPGVT--VEKKEGKLKGHKDVVIQDLPGIY 59

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
                  +E + R++L  E  D IL
Sbjct: 60  SLSPYTLEEVVARSYLVNEKPDAIL 84


>gi|149031326|gb|EDL86324.1| rCG38919 [Rattus norvegicus]
          Length = 518

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGEI R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 180 RLGEI-RGHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVYLD---KFIR 235

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 236 LLDAPGI 242


>gi|15595005|ref|NP_212794.1| GTP-binding protein Era [Borrelia burgdorferi B31]
 gi|195941480|ref|ZP_03086862.1| GTP-binding protein Era [Borrelia burgdorferi 80a]
 gi|218249442|ref|YP_002375160.1| GTP-binding protein Era [Borrelia burgdorferi ZS7]
 gi|225549958|ref|ZP_03770919.1| GTP-binding protein Era [Borrelia burgdorferi 118a]
 gi|226320503|ref|ZP_03796069.1| GTP-binding protein Era [Borrelia burgdorferi 29805]
 gi|226321358|ref|ZP_03796885.1| GTP-binding protein Era [Borrelia burgdorferi Bol26]
 gi|3334175|sp|O51604|ERA_BORBU RecName: Full=GTPase Era
 gi|226741167|sp|B7J2L5|ERA_BORBZ RecName: Full=GTPase Era
 gi|2688587|gb|AAC67005.1| GTP-binding protein (era) [Borrelia burgdorferi B31]
 gi|218164630|gb|ACK74691.1| GTP-binding protein Era [Borrelia burgdorferi ZS7]
 gi|225369417|gb|EEG98869.1| GTP-binding protein Era [Borrelia burgdorferi 118a]
 gi|226233154|gb|EEH31906.1| GTP-binding protein Era [Borrelia burgdorferi Bol26]
 gi|226234145|gb|EEH32860.1| GTP-binding protein Era [Borrelia burgdorferi 29805]
          Length = 290

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 21/144 (14%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGI---R 278
            ILG  + GKS+L N++    ++I++ IP TTR ++  I  D  G ++ I DT G    +
Sbjct: 7   AILGRPSTGKSTLLNSICGHKISIISPIPQTTRNNIKGIFTDDRGQIIFI-DTPGFHLSK 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKN--IDFIFIGTKSD 330
           +  +I   + I  +  EVE   LIL + +I  K      K +   KN  I F+ I  K D
Sbjct: 66  KKFNIAMMKNIHSSIGEVE---LILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILNKID 122

Query: 331 LYSTYTEEYDHLISSFTGE-GLEE 353
           L +T  +E    I+ F  E G+E+
Sbjct: 123 LKNTKIKE----ITQFLKEKGIED 142


>gi|316978412|gb|EFV61402.1| nuclear GTP-binding protein NUG1 [Trichinella spiralis]
          Length = 258

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++   K+ ++G+ N GKSS+ N+L +K +  V   PG T+++  I LD    L+   D+ 
Sbjct: 110 LKTSIKVGVVGYPNVGKSSIINSLKRKAICRVGAQPGITKNIQEIALDKNITLI---DSP 166

Query: 276 GI 277
           G+
Sbjct: 167 GV 168


>gi|311030148|ref|ZP_07708238.1| ribosomal biogenesis GTPase [Bacillus sp. m3-13]
          Length = 285

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T+    + +   G  +++ DT GI
Sbjct: 124 RALIVGIPNVGKSTLINRLAKKNIAQTGDRPGVTKAQQWVKV---GKELELLDTPGI 177


>gi|293611451|ref|ZP_06693746.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826235|gb|EFF84605.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 447

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 29/189 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           I ++G++NAGKS+LFN LA  DV     +  T    L  +D D  G +V ++DT G +R 
Sbjct: 202 ISLVGYTNAGKSTLFNILANSDVYAADQLFATLDPTLRRLDWDGIGTVV-LADTVGFVRN 260

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYT 336
              D+V  E  K T  E   A L+L + + +S   +   + ++ +   IG  + +   Y 
Sbjct: 261 LQHDLV--ESFKATLEETLEATLLLHVIDSSSHDMLDQIEAVEGVLKDIGADAPVLRVYN 318

Query: 337 ------EEYD------HL-----ISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSH-- 376
                 EE        H+     +S+ +G+GLE L   ++  L  + +K    + P++  
Sbjct: 319 KIDLSGEEAKIIYAEPHVPDRVYVSAHSGQGLELLQKAVQECLMGQIQKFSLVLKPAYGK 378

Query: 377 -KRHLYHLS 384
            +  LY L+
Sbjct: 379 LRTQLYALN 387


>gi|260429697|ref|ZP_05783673.1| GTP-binding protein, HSR1-related [Citreicella sp. SE45]
 gi|260419180|gb|EEX12434.1| GTP-binding protein, HSR1-related [Citreicella sp. SE45]
          Length = 522

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 21/158 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG---- 276
           +I + G  +AGKSSL NAL   D+A V  IP TT    T   D EG    + D  G    
Sbjct: 286 RIAVAGQISAGKSSLVNALLGTDLAEVDVIP-TTDAPKTYPTDFEGVETMLLDMPGLDGS 344

Query: 277 ----------IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
                     +   D IV      R   E++ A + +L   ++       P  +  + + 
Sbjct: 345 SRLARKVADELARADLIVWTVRANRPAREIDRATIAMLRGMVSDDPRRRMPPVV--VAVS 402

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
              +L  T+     HL    TG+ ++ +   + ++ ++
Sbjct: 403 CIDELLPTWPLPEGHL----TGDAMQRITEVVAAVQTD 436


>gi|242242589|ref|ZP_04797034.1| GTP-binding protein [Staphylococcus epidermidis W23144]
 gi|242234016|gb|EES36328.1| GTP-binding protein [Staphylococcus epidermidis W23144]
          Length = 416

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++I ++G++NAGKSS FN LA     +K++   T  P T +    I ++ EG+ + ISDT
Sbjct: 209 FQIALVGYTNAGKSSWFNVLANEETYEKNILFATLDPKTRQ----IQVN-EGFNLIISDT 263

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + AD+++
Sbjct: 264 VGFIQKLPTTLVAAFKSTLEEAKGADILM 292


>gi|225351437|ref|ZP_03742460.1| hypothetical protein BIFPSEUDO_03032 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157781|gb|EEG71064.1| hypothetical protein BIFPSEUDO_03032 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 496

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 22/206 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G++NAGKSSL N L      +   +  T    +      +G      DT G     
Sbjct: 278 VAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRARAKDGRQYAYVDTVGFVRRL 337

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSK----KEISFPKNIDFIFIGTK 328
                E  K T  EV  ADLI+ +          +I++      +I   + I  I +  K
Sbjct: 338 PTQLIEAFKSTLEEVSEADLIVHVVDGSHPDPFSQIDAVDDVLSDIDGVETIPTIIVFNK 397

Query: 329 SDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           +D     T E         +++S+F+GEG++EL  +++S+L      +   +P     L 
Sbjct: 398 ADRMDEATRERIEALMPEAYIVSAFSGEGVDELRMQVESMLPTPNVHVEALLPYTAGSL- 456

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAE 407
            +S+   Y ++ ++  +D G+ + AE
Sbjct: 457 -VSRVREYGKVINVEYRDDGMMLEAE 481


>gi|206971303|ref|ZP_03232254.1| GTP-binding protein Era [Bacillus cereus AH1134]
 gi|206734075|gb|EDZ51246.1| GTP-binding protein Era [Bacillus cereus AH1134]
          Length = 301

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   D
Sbjct: 3   RKGYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           T GI +    +    +K     ++  D++L +
Sbjct: 63  TPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFM 94


>gi|193213385|ref|YP_001999338.1| GTP-binding protein Era [Chlorobaculum parvum NCIB 8327]
 gi|193086862|gb|ACF12138.1| GTP-binding protein Era [Chlorobaculum parvum NCIB 8327]
          Length = 305

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  NAGKS+L N L    ++IVT  P TTR  +T     +   + I DT GI +    +
Sbjct: 14  VGAPNAGKSTLLNRLLDHKLSIVTPKPQTTRKKITGIYHDDRSQIIILDTPGIMDPKQSL 73

Query: 285 EKEGIKRTFLEVENADLILLL 305
            +  ++ T   + + D+I+ L
Sbjct: 74  HESMLEITRRSLRDTDVIVAL 94


>gi|152981315|ref|YP_001354343.1| hypothetical protein mma_2653 [Janthinobacterium sp. Marseille]
 gi|151281392|gb|ABR89802.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 315

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I+I+G  N GKS+L NAL KK VA V D P  T+  +   L L   +V ++DT G+
Sbjct: 118 RIMIMGIPNVGKSTLMNALLKKRVAKVGDEPAVTK--MQQRLYLGNNMV-LTDTPGM 171


>gi|325928523|ref|ZP_08189711.1| small GTP-binding protein domain/GTP-binding hypothetical protein
           [Xanthomonas perforans 91-118]
 gi|325541062|gb|EGD12616.1| small GTP-binding protein domain/GTP-binding hypothetical protein
           [Xanthomonas perforans 91-118]
          Length = 188

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGI 277
           ++G  N GKS+L NAL    V+IV++ P TTR  +L I    EG LV + DT G+
Sbjct: 1   MIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLV-DTPGL 54


>gi|307267613|ref|ZP_07549083.1| GTP-binding proten HflX [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917370|gb|EFN47674.1| GTP-binding proten HflX [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 413

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 14/89 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAI-----VTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I I+G++NAGKS+L NAL   +V +      T  P   R VL+      G  V + DT G
Sbjct: 201 IAIVGYTNAGKSTLLNALTNAEVYVEDKLFATLDPTARRLVLS-----SGREVILIDTVG 255

Query: 277 -IRE-TDDIVEKEGIKRTFLEVENADLIL 303
            IR+   D+V  E  K T  EV+ ADL+L
Sbjct: 256 FIRKLPHDLV--EAFKSTLEEVKYADLLL 282


>gi|268325133|emb|CBH38721.1| conserved hypothetical protein, GTPase of unknown function family
           [uncultured archaeon]
          Length = 187

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 21/177 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI+++GH N GKS  FN L    V   ++ PGTT D +   + + G  V++ D  G    
Sbjct: 2   KILLMGHPNVGKSVFFNRLTGAKV-FESNYPGTTVDFMKGWMRIGGEDVELIDVPGTFSL 60

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG------------TK 328
           +   + E +    LE EN D +++     SK E      ++ I  G             +
Sbjct: 61  EPKDKAEEVSVQMLE-ENQDSVVVCVLDASKVERGLYLALEIIEKGYPVIIALNMWDVAE 119

Query: 329 SDLYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
               S   E+ + ++       ++ +GEG +EL+++I      K +++  S+ +  R
Sbjct: 120 DKNISIDAEKLEEILGVPVVPTTAISGEGFKELVSRINDAAPVKIERIVTSVAASVR 176


>gi|257065848|ref|YP_003152104.1| GTP-binding protein Era [Anaerococcus prevotii DSM 20548]
 gi|256797728|gb|ACV28383.1| GTP-binding protein Era [Anaerococcus prevotii DSM 20548]
          Length = 293

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +I++G+ + ++G +N GKS+L   +  + ++I+++ P TTRD + I  + E   +   DT
Sbjct: 1   MIKSGF-VSVVGRANVGKSTLMEKIIGEKISIISNKPQTTRDKIQIIYNDEESQIIFLDT 59

Query: 275 AGIR 278
            GI+
Sbjct: 60  PGIQ 63


>gi|188585831|ref|YP_001917376.1| GTP-binding protein Era [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350518|gb|ACB84788.1| GTP-binding protein Era [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 297

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI  +G+ + ++G  NAGKS+L N +  + V I +D P TTR+ +    + E   +   D
Sbjct: 4   EIFYSGF-VSVIGRPNAGKSTLINYILGEKVVITSDKPQTTRNKIQCVYNGENSQIIFLD 62

Query: 274 TAGI 277
           T G+
Sbjct: 63  TPGM 66


>gi|154800420|ref|NP_001075427.1| guanine nucleotide binding protein-like 3 (nucleolar)-like [Rattus
           norvegicus]
          Length = 577

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGEI R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 239 RLGEI-RGHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVYLD---KFIR 294

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 295 LLDAPGI 301


>gi|86159103|ref|YP_465888.1| ribosome biogenesis GTP-binding protein YsxC [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|119368789|sp|Q2ILB9|ENGB_ANADE RecName: Full=Probable GTP-binding protein EngB
 gi|85775614|gb|ABC82451.1| GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 216

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL 262
           +I  +G SN GKSS+ NALA +K +A V+  PG TR +   DL
Sbjct: 27  EIAFVGRSNVGKSSMLNALARRKGLARVSSTPGRTRALQFFDL 69


>gi|319408284|emb|CBI81937.1| GTP-binding protein Era [Bartonella schoenbuchensis R1]
          Length = 303

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N L    V+IVT    TTR ++   +  E   + + DT G
Sbjct: 10  RCGF-VALIGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIYENTQIVLIDTPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           +      +E   +   +     AD++L+L ++ +
Sbjct: 69  VFRPHKRLEHAMVSAAWGGARGADILLILIDVQN 102


>gi|33332419|gb|AAQ11417.1| GTP-binding protein ERA [Yersinia enterocolitica]
          Length = 177

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 37/193 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  + + +  EG Y     DT G+   
Sbjct: 12  IAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRI-MGIHTEGPYQAIYVDTPGLH-- 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I EK  I R             L    +   I   + + F+  GT       +T + +
Sbjct: 69  --IEEKRAINR-------------LMNRAASSSIGDVELVIFVVEGTN------WTADDE 107

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++         L  INK+ ++ ++K K LP        H+  LSQ + +L++  ++ E
Sbjct: 108 MVVNKLRSLQCPVLLAINKVDNV-TDKTKLLP--------HIQFLSQQMNFLDVVPISAE 158

Query: 398 KDCGLDIIAENLR 410
           K   +D IA  +R
Sbjct: 159 KGMNVDTIASIVR 171


>gi|67522419|ref|XP_659270.1| hypothetical protein AN1666.2 [Aspergillus nidulans FGSC A4]
 gi|40745630|gb|EAA64786.1| hypothetical protein AN1666.2 [Aspergillus nidulans FGSC A4]
          Length = 498

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 7/95 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G+ N GKSS+ N L KK V  V  IPG T+    + L    YL+         +TD
Sbjct: 268 VGLIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYVTLMKRIYLIDCPGVVPPSQTD 327

Query: 282 DIVEKEGIKRTFLEVENAD-----LILLLKEINSK 311
               ++ + R  + VEN +     +  +LK +  K
Sbjct: 328 --TPEDILLRGVVRVENVENPEQYIPAILKRVQPK 360


>gi|239941036|ref|ZP_04692973.1| GTP-binding protein Era [Streptomyces roseosporus NRRL 15998]
 gi|239987515|ref|ZP_04708179.1| GTP-binding protein Era [Streptomyces roseosporus NRRL 11379]
          Length = 324

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 10/139 (7%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           S   Q +     R G+   + G  NAGKS+L NAL  + VAI ++ P TTR  +   +  
Sbjct: 12  SAAQQAETTSTHRAGFACFV-GRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHR 70

Query: 265 EGYLVKISDTAGIRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEIS 315
           +   + + DT G+ +   ++ +   + ++ T+ EV+       AD  L   +    KE++
Sbjct: 71  DDAQLILVDTPGLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKYIVKELA 130

Query: 316 FPKNIDFIFIGTKSDLYST 334
             K    I I TK+DL  +
Sbjct: 131 GIKKTPKIAIITKTDLVES 149


>gi|149197046|ref|ZP_01874099.1| GTP-binding protein Era [Lentisphaera araneosa HTCC2155]
 gi|149140156|gb|EDM28556.1| GTP-binding protein Era [Lentisphaera araneosa HTCC2155]
          Length = 301

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           GY + I+G  NAGKS+  N      +A V+ +P TTR         +   +  SDT GI 
Sbjct: 11  GY-VAIVGRPNAGKSTFVNQALGYKLAAVSRVPHTTRRRWVGIFTDDDAQIIFSDTPGIH 69

Query: 279 ETDDIVEKEGIKRTFLE-VENADLILLL 305
           E+ + ++ E + RT    ++  D+ LLL
Sbjct: 70  ESKNRMD-EMMDRTIKRAIDKNDITLLL 96


>gi|332158905|ref|YP_004424184.1| GTP-binding protein [Pyrococcus sp. NA2]
 gi|331034368|gb|AEC52180.1| GTP-binding protein [Pyrococcus sp. NA2]
          Length = 355

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI +   KI ++G+ N GKS++ N L  K       IPG T+    I L    +L+   D
Sbjct: 98  EIGKEKVKIALIGYPNVGKSTIINVLKGKHAVGTAPIPGYTKGKQLIRLTKRLWLL---D 154

Query: 274 TAGIRETDDIVE 285
           T G+   DD  E
Sbjct: 155 TPGVVPIDDFDE 166


>gi|329934648|ref|ZP_08284689.1| GTP-binding protein Era [Streptomyces griseoaurantiacus M045]
 gi|329305470|gb|EGG49326.1| GTP-binding protein Era [Streptomyces griseoaurantiacus M045]
          Length = 317

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 12/142 (8%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTID 261
           +++  S+     + R G+   + G  NAGKS+L NAL  + VAI ++ P TTR  V  I 
Sbjct: 3   VATQSSEEPAEAVHRAGFACFV-GRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIV 61

Query: 262 LDLEGYLVKISDTAGIRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKK 312
              E  L+ + DT G+ +   ++ +   + ++ T+ EV+       AD  L   +    K
Sbjct: 62  HRPEAQLI-LVDTPGLHKPRTLLGERLNDVVRATWAEVDVIGFCLPADQKLGPGDRFIAK 120

Query: 313 EISFPKNIDFIFIGTKSDLYST 334
           E++  K    + I TK+DL  +
Sbjct: 121 ELAGIKRTPKVAIVTKTDLVDS 142


>gi|332140433|ref|YP_004426171.1| GTP-binding protein Era [Alteromonas macleodii str. 'Deep ecotype']
 gi|332141898|ref|YP_004427636.1| GTP-binding protein Era [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550455|gb|AEA97173.1| GTP-binding protein Era [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551920|gb|AEA98638.1| GTP-binding protein Era [Alteromonas macleodii str. 'Deep ecotype']
          Length = 303

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +L ID D + Y     DT G+ + 
Sbjct: 11  VAIVGRPNVGKSTLLNRLLGQKVSITSRKPQTTRHRILGIDTDGD-YQAIYVDTPGLHQD 69

Query: 281 DDIVEKEGIKR 291
               EK  I R
Sbjct: 70  ----EKRAINR 76


>gi|315282397|ref|ZP_07870817.1| ribosome biogenesis GTPase YqeH [Listeria marthii FSL S4-120]
 gi|313613949|gb|EFR87673.1| ribosome biogenesis GTPase YqeH [Listeria marthii FSL S4-120]
          Length = 366

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     LV 
Sbjct: 157 LRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVLV- 215

Query: 271 ISDTAGI 277
             DT GI
Sbjct: 216 --DTPGI 220


>gi|269784933|ref|NP_001161618.1| nucleostemin-like protein [Saccoglossus kowalevskii]
 gi|268054241|gb|ACY92607.1| nucleostemin-like protein [Saccoglossus kowalevskii]
          Length = 606

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + ++G  N GKSSL N+L +    +V   PG T+ +  + LD     VK+ D  
Sbjct: 263 IKTSITVGVVGFPNVGKSSLINSLKRAKSCVVGATPGVTKSMQQVQLDKH---VKLLDCP 319

Query: 276 GI 277
           GI
Sbjct: 320 GI 321


>gi|260578248|ref|ZP_05846164.1| GTP-binding protein Era [Corynebacterium jeikeium ATCC 43734]
 gi|258603550|gb|EEW16811.1| GTP-binding protein Era [Corynebacterium jeikeium ATCC 43734]
          Length = 336

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  E   + + DT G
Sbjct: 43  RSGF-VSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGIVHREDAQIILVDTPG 101

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ +   E +K T+ +V+
Sbjct: 102 LHRPRTLLGERLNEVVKETYSDVD 125


>gi|166364001|ref|YP_001656274.1| hypothetical protein MAE_12600 [Microcystis aeruginosa NIES-843]
 gi|166086374|dbj|BAG01082.1| hypothetical protein MAE_12600 [Microcystis aeruginosa NIES-843]
          Length = 623

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI R    I+++G + AGKSSL N L + D+A V  +P T           EG  + + D
Sbjct: 278 EIDRQPVNILLVGRTGAGKSSLINTLFRADLAQVDLLPSTDAIQSYHWQTPEGDELILWD 337

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           T G  + +   +++   +     ENADL++L+
Sbjct: 338 TPGYEQANRADDRQ---KVLNYAENADLLILV 366


>gi|70734071|ref|YP_257711.1| GTP-binding protein HflX [Pseudomonas fluorescens Pf-5]
 gi|68348370|gb|AAY95976.1| GTP-binding protein HflX [Pseudomonas fluorescens Pf-5]
          Length = 433

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFNA+   DV     +  T    L  ++
Sbjct: 182 VRSQREQARRGRKRADIPSVSLVGYTNAGKSTLFNAVTASDVFAADQLFATLDPTLRRLE 241

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           LD  G +V ++DT G IR     +  E  + T  E  N+DL+L
Sbjct: 242 LDDLGPIV-LADTVGFIRHLPHKL-VEAFRATLEESSNSDLLL 282


>gi|57242463|ref|ZP_00370401.1| GTP-binding protein Era [Campylobacter upsaliensis RM3195]
 gi|57016748|gb|EAL53531.1| GTP-binding protein Era [Campylobacter upsaliensis RM3195]
          Length = 291

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 8/122 (6%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGYLVKISDT 274
           +++G+ I ++G +NAGKS+L N+L ++ +A+V+     T R +  I +  +  L+ I DT
Sbjct: 1   MKSGF-ISLIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMQDDNQLIFI-DT 58

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNIDFIFIGTKS 329
            G+ E+   + +  ++     +++ D+I+ +  I     + +K ++    I  + +  K 
Sbjct: 59  PGLHESKATLNQLLVQSALKAMKDCDVIVFVASIFDEISDYEKFLTLKSQIPHLVVLNKV 118

Query: 330 DL 331
           DL
Sbjct: 119 DL 120


>gi|319401407|gb|EFV89617.1| GTP-binding proten HflX [Staphylococcus epidermidis FRI909]
          Length = 413

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++I ++G++NAGKSS FN LA     +K++   T  P T +    I ++ EG+ + ISDT
Sbjct: 206 FQIALVGYTNAGKSSWFNVLANEETYEKNILFATLDPKTRQ----IQVN-EGFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + AD+++
Sbjct: 261 VGFIQKLPTTLVAAFKSTLEEAKGADILM 289


>gi|251825692|gb|ACT20914.1| GTP-binding protein [Pseudomonas fluorescens]
          Length = 433

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFN + + DV     +  T    L  +D
Sbjct: 182 VRSQREQSRRGRKRADIPTVSLVGYTNAGKSTLFNNVTQSDVYAADQLFATLDPTLRRLD 241

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           LD  G +V ++DT G IR     +  E  + T  E  N+DL+L
Sbjct: 242 LDDLGPIV-LADTVGFIRHLPHKL-VEAFRATLEESSNSDLLL 282


>gi|188590593|ref|YP_001921995.1| ribosome biogenesis GTP-binding protein YsxC [Clostridium botulinum
           E3 str. Alaska E43]
 gi|238691973|sp|B2UX10|ENGB_CLOBA RecName: Full=Probable GTP-binding protein EngB
 gi|188500874|gb|ACD54010.1| GTP-binding protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 198

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 45/179 (25%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR---------DVLTIDLDLE 265
           I N  ++  +G SN GKSSL N+L  +K +A V+  PG TR         D   +DL   
Sbjct: 20  IDNRNEVAFVGRSNVGKSSLINSLTNRKKLAKVSGTPGKTRLINFFLINNDFYLVDLPGY 79

Query: 266 GYLVKIS----DTAGIRETDDIVEKEGIKRTFLEVEN-----ADLILLLKEINSKKEISF 316
           GY  K+S    DT G      +  +E +KR    V++      D I++        E + 
Sbjct: 80  GY-AKVSKSEKDTWGKTIETYLSHREELKRIVCLVDSRHKPTGDDIMMY-------EWAK 131

Query: 317 PKNIDFIFIGTKSD-----------------LYSTYTEEYDHLISSFTGEGLEELINKI 358
               D + + TKSD                 L  T  +++ +  SS   +G EELI+K+
Sbjct: 132 HFGYDVVIVATKSDKLKNAEFKKSEKLIRDTLKLTKDDKF-YFYSSLNKKGTEELIDKL 189


>gi|229543782|ref|ZP_04432842.1| Nitric-oxide synthase [Bacillus coagulans 36D1]
 gi|229328202|gb|EEN93877.1| Nitric-oxide synthase [Bacillus coagulans 36D1]
          Length = 368

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFN-----ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  RNG  + + G +N GKS+  N     A  +K+V   +  PGTT D++ I LD +G  
Sbjct: 156 EQYRNGKDVYVAGCTNVGKSTFINRIIRQATGEKEVITTSYFPGTTLDMIGIPLD-DG-- 212

Query: 269 VKISDTAGI 277
             + DT GI
Sbjct: 213 TSLYDTPGI 221


>gi|167038858|ref|YP_001661843.1| ferrous iron transport protein B [Thermoanaerobacter sp. X514]
 gi|300913557|ref|ZP_07130874.1| ferrous iron transport protein B [Thermoanaerobacter sp. X561]
 gi|307723428|ref|YP_003903179.1| ferrous iron transport protein B [Thermoanaerobacter sp. X513]
 gi|166853098|gb|ABY91507.1| ferrous iron transport protein B [Thermoanaerobacter sp. X514]
 gi|300890242|gb|EFK85387.1| ferrous iron transport protein B [Thermoanaerobacter sp. X561]
 gi|307580489|gb|ADN53888.1| ferrous iron transport protein B [Thermoanaerobacter sp. X513]
          Length = 657

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G++N GKS +FN L      I+ + PG T +     L  +G  +KI D  GI    
Sbjct: 7   IALAGNANVGKSVIFNQLTGLT-QIIGNWPGKTVERAEGLLRFKGRTIKIVDLPGIYSLS 65

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
              ++E + R F+  E  D+++
Sbjct: 66  AYSQEEIVSREFIAFEKPDVVI 87


>gi|41152350|ref|NP_956987.1| ADP-ribosylation factor-like 3, like 1 [Danio rerio]
 gi|37589641|gb|AAH59431.1| ADP-ribosylation factor-like 3, like 1 [Danio rerio]
          Length = 187

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 45/178 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV+LG  NAGK++L   LA +DV  +T   G     +T D    G  + + D  G R+ 
Sbjct: 24  RIVLLGLDNAGKTTLLKQLASEDVNTITPTQGFNIKSVTCD----GMKLNVWDIGGQRKI 79

Query: 281 DDIVEKEGIKRTFLE--VENADLILLLKEINSKKEISFP-------------KNIDFIFI 325
                     R F +  +EN DL++ + +   KK                  K +  +  
Sbjct: 80  ----------RPFWKKYLENTDLLIYVIDSADKKRFEETGLELSELIDEENLKGVPLLIF 129

Query: 326 GTKSDLYS--------------TYTE-EYD-HLISSFTGEGLEELINKIKSILSNKFK 367
             K DL +              TY + E+     S+ +GEG+++ +N I + + NK K
Sbjct: 130 ANKQDLATASPASEIAEGLNLHTYRDREWQIQACSAVSGEGVQDGMNWISNNIVNKKK 187


>gi|34396175|gb|AAP55641.1| GTP binding protein [Spiroplasma citri]
 gi|110004356|emb|CAK98694.1| probable gtp binding protein [Spiroplasma citri]
          Length = 199

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR 255
           N I+S ++  K G I  + ++I  LG SN GKSS  N L  ++ +A V+ IPG TR
Sbjct: 8   NYITSAVN--KAGWINDDLFEIAFLGKSNVGKSSFLNMLTNQRQLAKVSQIPGKTR 61


>gi|297617800|ref|YP_003702959.1| GTP-binding protein Era [Syntrophothermus lipocalidus DSM 12680]
 gi|297145637|gb|ADI02394.1| GTP-binding protein Era [Syntrophothermus lipocalidus DSM 12680]
          Length = 294

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 39/82 (47%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKS+  N +  + VAIV++ P TTR+ +      E   +   DT GI      
Sbjct: 10  IVGRPNVGKSTFLNTVIGQKVAIVSEKPQTTRNRIQGIYTCEQGQIIFIDTPGIHRPRHK 69

Query: 284 VEKEGIKRTFLEVENADLILLL 305
           + +  ++        AD++L +
Sbjct: 70  LGEYMVRTAHATAREADVVLYM 91


>gi|291444476|ref|ZP_06583866.1| GTP-binding protein Era [Streptomyces roseosporus NRRL 15998]
 gi|291347423|gb|EFE74327.1| GTP-binding protein Era [Streptomyces roseosporus NRRL 15998]
          Length = 321

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 10/139 (7%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           S   Q +     R G+   + G  NAGKS+L NAL  + VAI ++ P TTR  +   +  
Sbjct: 9   SAAQQAETTSTHRAGFACFV-GRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHR 67

Query: 265 EGYLVKISDTAGIRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEIS 315
           +   + + DT G+ +   ++ +   + ++ T+ EV+       AD  L   +    KE++
Sbjct: 68  DDAQLILVDTPGLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKYIVKELA 127

Query: 316 FPKNIDFIFIGTKSDLYST 334
             K    I I TK+DL  +
Sbjct: 128 GIKKTPKIAIITKTDLVES 146


>gi|261204183|ref|XP_002629305.1| nucleolar GTP-binding protein 2 [Ajellomyces dermatitidis SLH14081]
 gi|239587090|gb|EEQ69733.1| nucleolar GTP-binding protein 2 [Ajellomyces dermatitidis SLH14081]
          Length = 563

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 15/121 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 324 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLI---DCPG 380

Query: 277 -IRETDDIVEKEGIKRTFLEVENAD-----LILLLKEINSKK-----EI-SFPKNIDFIF 324
            +  ++   E++ + R  + VEN +     +  +LK + S+      EI ++  +IDF+ 
Sbjct: 381 VVPPSNHDTEEDILLRGVVRVENVENPEQYIPGVLKRVQSRHIERTYEIKNYKDSIDFLS 440

Query: 325 I 325
           I
Sbjct: 441 I 441


>gi|228474990|ref|ZP_04059718.1| GTP-binding protein HflX [Staphylococcus hominis SK119]
 gi|314936533|ref|ZP_07843880.1| GTP-binding protein HflX [Staphylococcus hominis subsp. hominis
           C80]
 gi|228270975|gb|EEK12363.1| GTP-binding protein HflX [Staphylococcus hominis SK119]
 gi|313655152|gb|EFS18897.1| GTP-binding protein HflX [Staphylococcus hominis subsp. hominis
           C80]
          Length = 412

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++I ++G++NAGKSS FN LA     +KD+   T  P T +    I ++  G+ + ISDT
Sbjct: 206 FQIALIGYTNAGKSSWFNVLANETTFEKDLLFATLDPKTRQ----IQIN-NGFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E ++A+L+L
Sbjct: 261 VGFIQKLPTTLVAAFKSTLEEAKSANLLL 289


>gi|221060272|ref|XP_002260781.1| autoantigen ngp-1, homolog [Plasmodium knowlesi strain H]
 gi|193810855|emb|CAQ42753.1| autoantigen ngp-1, homolog, putative [Plasmodium knowlesi strain H]
          Length = 563

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 9/84 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYK----IVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           F KND+ + I Q    +  +N  K    I ++G+ N GKS++ N+L KK V I   +PG 
Sbjct: 302 FGKNDLFNVIRQ--YTQFFQNQRKKHIHIGLIGYPNVGKSAIINSLKKKVVCISACLPGQ 359

Query: 254 TRDVLTIDLDLEGYLVKISDTAGI 277
           T+    I L  + YL+   D  GI
Sbjct: 360 TKYWQFIKLTSKIYLI---DCPGI 380


>gi|167765941|ref|ZP_02437994.1| hypothetical protein CLOSS21_00432 [Clostridium sp. SS2/1]
 gi|167712439|gb|EDS23018.1| hypothetical protein CLOSS21_00432 [Clostridium sp. SS2/1]
          Length = 213

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++   G SN GKSSL NAL  +K  A ++  PG T+ +   +++ E Y V +      + 
Sbjct: 38  EVAFAGKSNVGKSSLINALMNRKSYARISAQPGKTQTINYYNINEELYYVDLPGYGFAKV 97

Query: 280 TDDIVEKEG--IKRTFLEVENADLILLLKEINSK 311
           T  + EK G  I+      +   ++ LL +I  K
Sbjct: 98  TQSVKEKWGHMIENYLQTSKQLKMVFLLIDIRHK 131


>gi|170723842|ref|YP_001751530.1| GTP-binding proten HflX [Pseudomonas putida W619]
 gi|169761845|gb|ACA75161.1| GTP-binding proten HflX [Pseudomonas putida W619]
          Length = 433

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           + ++G++NAGKS+LFNAL + DV     +  T    L  + LD  G +V ++DT G IR 
Sbjct: 201 VSLVGYTNAGKSTLFNALTESDVYAADQLFATLDPTLRRLQLDDLGPIV-LADTVGFIRH 259

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
               +  E  + T  E  N+DL+L
Sbjct: 260 LPHKL-VEAFRATLEESSNSDLLL 282


>gi|260549847|ref|ZP_05824063.1| GTPase [Acinetobacter sp. RUH2624]
 gi|260407097|gb|EEX00574.1| GTPase [Acinetobacter sp. RUH2624]
          Length = 258

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL--------DLEGY 267
           +GY+I   G SNAGKSS  NAL  KK +A  +  PG T+ +    L        DL GY
Sbjct: 60  SGYEIAFAGRSNAGKSSAINALTNKKQLARASKKPGRTQMINFFSLGNPDQRLVDLPGY 118


>gi|239614357|gb|EEQ91344.1| nucleolar GTP-binding protein 2 [Ajellomyces dermatitidis ER-3]
 gi|327356984|gb|EGE85841.1| nucleolar GTP-binding protein 2 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 563

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 15/121 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 324 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLI---DCPG 380

Query: 277 -IRETDDIVEKEGIKRTFLEVENAD-----LILLLKEINSKK-----EI-SFPKNIDFIF 324
            +  ++   E++ + R  + VEN +     +  +LK + S+      EI ++  +IDF+ 
Sbjct: 381 VVPPSNHDTEEDILLRGVVRVENVENPEQYIPGVLKRVQSRHIERTYEIKNYKDSIDFLS 440

Query: 325 I 325
           I
Sbjct: 441 I 441


>gi|224057138|ref|XP_002299138.1| predicted protein [Populus trichocarpa]
 gi|222846396|gb|EEE83943.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 16/98 (16%)

Query: 222 IVILGHSNAGKSSLFNALAK------KDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISD 273
           +  +G  NAGKS+L NA+AK      + V+ +T+  +PGTT  ++ ++  L G   K+ D
Sbjct: 322 VWAVGAQNAGKSTLLNAMAKCVGGNERKVSYLTEAPVPGTTLGIVRVEGVLPGQ-AKLFD 380

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           T G+     I        T L  E   L+ + KE+  +
Sbjct: 381 TPGLLNPQQIT-------TRLNREEQRLVHISKELKPR 411


>gi|254475433|ref|ZP_05088819.1| GTP-binding proten HflX [Ruegeria sp. R11]
 gi|214029676|gb|EEB70511.1| GTP-binding proten HflX [Ruegeria sp. R11]
          Length = 423

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 34/193 (17%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y IV L G++NAGKS+LFN L   +V +  D+   T D     ++L +G  + +SDT G 
Sbjct: 202 YPIVALVGYTNAGKSTLFNRLTGAEV-MAKDMLFATLDPTMRRVELPDGPEIILSDTVGF 260

Query: 278 RETDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF----------- 324
               D+  +     + T  EV  AD+++ +++I+ ++  +   +++ I            
Sbjct: 261 --ISDLPTELVAAFRATLEEVLAADVVVHVRDISHEESQNQADDVEAILTSLGVDDSRAR 318

Query: 325 --IGTKSDLYS--------TYTEEYD--HLISSFTGEGLEELI----NKIKSILSNKFKK 368
             +  K DL S           E  D  H IS+ +GEGL  L+     K++S+       
Sbjct: 319 IEVWNKLDLLSEDEAEARRQRAEREDGIHAISAISGEGLPRLLADIAEKLRSVRHEDDIT 378

Query: 369 LPFSIPSHKRHLY 381
           L F+    +  L+
Sbjct: 379 LTFAQGKQRAWLF 391


>gi|159899445|ref|YP_001545692.1| GTP1/OBG protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892484|gb|ABX05564.1| GTP1/OBG protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 444

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           I ++G++NAGKS+L N LA+ DV +  D+   T D  T  + L  G  V ++DT G  + 
Sbjct: 220 ISVVGYTNAGKSTLLNRLAQADV-LAADMLFATLDPTTRKVALPGGRAVLMTDTVGFIQR 278

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
                    + T  E+  AD++L
Sbjct: 279 LPTALVAAFRATLEEIAEADVLL 301


>gi|312880030|ref|ZP_07739830.1| GTP-binding protein Era [Aminomonas paucivorans DSM 12260]
 gi|310783321|gb|EFQ23719.1| GTP-binding protein Era [Aminomonas paucivorans DSM 12260]
          Length = 308

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G+  R+G  + +LG  N GKSSL NAL    +A V+    TTR V+   +      + + 
Sbjct: 6   GKPFRSGC-VALLGRPNVGKSSLANALVGVKIAAVSPKAQTTRQVVRGIVQTPEAQIVLV 64

Query: 273 DTAGIRE 279
           DT G+ E
Sbjct: 65  DTPGVHE 71


>gi|299536767|ref|ZP_07050075.1| hypothetical protein BFZC1_12128 [Lysinibacillus fusiformis ZC1]
 gi|298727779|gb|EFI68346.1| hypothetical protein BFZC1_12128 [Lysinibacillus fusiformis ZC1]
          Length = 291

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINRLAKKNIAKTGNTPGVTKAQQWIKV---GKELELLDTPGI 175


>gi|260890871|ref|ZP_05902134.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254]
 gi|260859424|gb|EEX73924.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254]
          Length = 77

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKI 419
           + N  +KL  +   HK  L      +R +        D GL  D+I+ +L+ A  SL +I
Sbjct: 1   MENSSEKLIITNIRHKTALEKTKDAIRNI----FETIDMGLPMDLISVDLKEALDSLSEI 56

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG +  E +LD +F  FC+GK
Sbjct: 57  TGEISSEDILDHVFGNFCVGK 77


>gi|289577468|ref|YP_003476095.1| ferrous iron transporter B [Thermoanaerobacter italicus Ab9]
 gi|289527181|gb|ADD01533.1| ferrous iron transport protein B [Thermoanaerobacter italicus Ab9]
          Length = 657

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G++N GKS +FN L      I+ + PG T +     L  +G  +KI D  GI    
Sbjct: 7   IALAGNANVGKSVIFNQLTGLT-QIIGNWPGKTVERAEGVLRFKGRTIKIVDLPGIYSLS 65

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
              ++E + R F+  E  D+++
Sbjct: 66  AYSQEEIVSREFIAFEKPDVVI 87


>gi|169827105|ref|YP_001697263.1| hypothetical protein Bsph_1533 [Lysinibacillus sphaericus C3-41]
 gi|168991593|gb|ACA39133.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 290

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINRLAKKNIAKTGNTPGVTKAQQWIKV---GKELELLDTPGI 175


>gi|149369521|ref|ZP_01889373.1| GTP-binding protein HflX [unidentified eubacterium SCB49]
 gi|149356948|gb|EDM45503.1| GTP-binding protein HflX [unidentified eubacterium SCB49]
          Length = 403

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 16/120 (13%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLD 263
            +G  G +IR    + ++G++N GKS+L N ++K DV     +   +  T R V+  +L 
Sbjct: 192 QRGNRGSLIR----VALVGYTNVGKSTLMNVISKSDVFAENKLFATLDTTVRKVVIGNLP 247

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
                  ++DT G          E  K T  EV  ADL+L + +I+ +   SF  +ID +
Sbjct: 248 F-----LLTDTVGFIRKLPTQLVESFKSTLDEVREADLLLHVVDISHE---SFEDHIDSV 299


>gi|149197591|ref|ZP_01874641.1| hypothetical protein LNTAR_20198 [Lentisphaera araneosa HTCC2155]
 gi|149139161|gb|EDM27564.1| hypothetical protein LNTAR_20198 [Lentisphaera araneosa HTCC2155]
          Length = 318

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 13/144 (9%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGY 220
           +D   H++S  E + D+   E +     K++ N     +K D     +   L   IR   
Sbjct: 78  LDWAEHLKSKYE-NCDYVITETINRRGLKQITNTARQLIKEDRKKKGATRPLFRPIR--- 133

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL--DLEGYLVKISDTAGIR 278
            ++I G  N GKSSL NAL +K  A     PG TR    I L  D+E     + DT GI 
Sbjct: 134 -LMIAGVPNVGKSSLINALNRKKSARTGPRPGVTRSQQWITLADDME-----LLDTPGIM 187

Query: 279 ETDDIVEKEGIKRTFLEVENADLI 302
              + + + G++   +     DLI
Sbjct: 188 PPGNPLVECGLRLGLINAVKQDLI 211


>gi|110802030|ref|YP_697443.1| GTP-binding protein [Clostridium perfringens SM101]
 gi|110682531|gb|ABG85901.1| GTP-binding protein [Clostridium perfringens SM101]
          Length = 440

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 3/64 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L   G +V I DTAG  +
Sbjct: 15  ISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFI-DTAGFDD 73

Query: 280 TDDI 283
             +I
Sbjct: 74  EGEI 77


>gi|16803531|ref|NP_465016.1| GTP-binding protein YqeH [Listeria monocytogenes EGD-e]
 gi|224501569|ref|ZP_03669876.1| GTP-binding protein YqeH [Listeria monocytogenes FSL R2-561]
 gi|254829750|ref|ZP_05234405.1| GTP-binding protein YqeH [Listeria monocytogenes 10403S]
 gi|16410920|emb|CAC99569.1| lmo1491 [Listeria monocytogenes EGD-e]
          Length = 366

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     LV 
Sbjct: 157 LRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVLV- 215

Query: 271 ISDTAGI 277
             DT GI
Sbjct: 216 --DTPGI 220


>gi|322375539|ref|ZP_08050051.1| GTP-binding protein HflX [Streptococcus sp. C300]
 gi|321279247|gb|EFX56288.1| GTP-binding protein HflX [Streptococcus sp. C300]
          Length = 412

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N+L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNSLTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPRLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E+L    + KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVEDFTPTQTPYALISAKSEDSREQLQALFLEKIKEIFEAFTLRVPFS-KSYKIH 375


>gi|239979360|ref|ZP_04701884.1| GTP-binding protein Era [Streptomyces albus J1074]
 gi|291451235|ref|ZP_06590625.1| GTP-binding protein Era [Streptomyces albus J1074]
 gi|291354184|gb|EFE81086.1| GTP-binding protein Era [Streptomyces albus J1074]
          Length = 313

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 10/124 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   + G  NAGKS+L NAL  + VAI ++ P TTR  +   +      + + DT G
Sbjct: 13  RAGFACFV-GRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPDAQLILVDTPG 71

Query: 277 IRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEISFPKNIDFIFIGT 327
           + +   ++ +   + ++ T+ EV+       AD  L   +    KEI+  K    + + T
Sbjct: 72  LHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDRFIAKEIAGIKKTPKVAVVT 131

Query: 328 KSDL 331
           K+DL
Sbjct: 132 KTDL 135


>gi|212551105|ref|YP_002309422.1| ribosome biogenesis GTP-binding protein YsxC [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549343|dbj|BAG84011.1| GTPase EngB [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 209

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 212 LGEIIRNGY-KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +G+  R+G+ +   +G SN GKSSL N L  +K +A+ + IPG T+ +    ++ E YLV
Sbjct: 23  VGKCPRDGFPEYAFIGRSNVGKSSLINMLTGQKGLALTSSIPGKTQLINYFLINNEWYLV 82

Query: 270 KI 271
            +
Sbjct: 83  DL 84


>gi|41408243|ref|NP_961079.1| GTP-binding protein Era [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81831734|sp|Q73Y13|ERA_MYCPA RecName: Full=GTPase Era
 gi|41396598|gb|AAS04462.1| Bex [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 299

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    VAI +  P TTR  +   +  E + + + DT G
Sbjct: 5   RSGF-VCLVGRPNTGKSTLTNALVGTKVAITSMRPQTTRHTIRGIVHREDFQIILVDTPG 63

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ K   + ++ T+ EV+
Sbjct: 64  LHRPRTLLGKRLNDLVRDTYAEVD 87


>gi|67922497|ref|ZP_00516006.1| GTP-binding protein, HSR1-related [Crocosphaera watsonii WH 8501]
 gi|67855668|gb|EAM50918.1| GTP-binding protein, HSR1-related [Crocosphaera watsonii WH 8501]
          Length = 491

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 5/114 (4%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRD 256
           N + SH S+ +     +    I I+G++NAGKS+L NAL   +V     +   +  TTR 
Sbjct: 297 NKLQSHRSRLRQQRQKQEVPSIAIVGYTNAGKSTLINALTNAEVYTADQLFATLDPTTRR 356

Query: 257 VLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  ID +  + Y   ++DT G          +  + T  EV  AD +L L +++
Sbjct: 357 LSGIDDNTGQPYTFLLTDTVGFIHELPPSLVDAFRATLEEVTEADALLHLVDLS 410


>gi|332295774|ref|YP_004437697.1| GTP-binding proten HflX [Thermodesulfobium narugense DSM 14796]
 gi|332178877|gb|AEE14566.1| GTP-binding proten HflX [Thermodesulfobium narugense DSM 14796]
          Length = 418

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 48/176 (27%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G++NAGKS+L N L    V +        RD L   LD +  ++K +D   +  TD
Sbjct: 198 ISLVGYTNAGKSTLMNVLTNSTVLV--------RDQLFSTLDTKTAIIKFNDDTKVFLTD 249

Query: 282 DI--VEK------EGIKRTFLEVENADLIL---------------------LLKEINSKK 312
            +  + K      E  K T  ++  ++ +L                     +LKEINS  
Sbjct: 250 TVGFIRKLPHRLIEAFKATLSQISESNFLLHVVDASKPIEIIKQDIKSVNEVLKEINSND 309

Query: 313 EIS------FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
             S        K  +   +   ++LY  Y       IS+ TG G+++L+ KIK  L
Sbjct: 310 IPSILVFNKIDKCTNLTNVHELAELYKPYC-----FISAITGYGIDKLLEKIKYFL 360


>gi|331269998|ref|YP_004396490.1| GTP-binding protein Era [Clostridium botulinum BKT015925]
 gi|329126548|gb|AEB76493.1| GTP-binding protein Era [Clostridium botulinum BKT015925]
          Length = 294

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ I I+G  N GKS+L N +  + ++IV+  P TTR+ +   L  E Y +   DT
Sbjct: 1   MFKSGF-ISIIGRPNVGKSTLINEILGEKLSIVSCRPQTTRNNIRAILTKEDYQLVFLDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +K      +  DLI+ +
Sbjct: 60  PGIHKPRHKLGEYMVKAAESSKDEVDLIVFI 90


>gi|229086391|ref|ZP_04218567.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-44]
 gi|228696907|gb|EEL49716.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-44]
          Length = 287

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + +K      I++G     IR     +I+G  N GKS+L N LAKK++A   D PG T  
Sbjct: 102 VLVKEKFDKMIAKGIRPRAIRA----LIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTA 157

Query: 257 VLTIDLDLEGYLVKISDTAGI 277
              I +   G  +++ DT GI
Sbjct: 158 QQWIKV---GKEMELLDTPGI 175


>gi|224500490|ref|ZP_03668839.1| GTP-binding protein YqeH [Listeria monocytogenes Finland 1988]
          Length = 366

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     LV 
Sbjct: 157 LRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVLV- 215

Query: 271 ISDTAGI 277
             DT GI
Sbjct: 216 --DTPGI 220


>gi|169331621|ref|ZP_02860814.1| hypothetical protein ANASTE_00005 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259683|gb|EDS73649.1| hypothetical protein ANASTE_00005 [Anaerofustis stercorihominis DSM
           17244]
          Length = 302

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 39/206 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRE- 279
           I I+G +N GKS+L N L  + ++IV++ P TTR ++  I       +V I DT G  + 
Sbjct: 10  ISIVGRTNVGKSTLLNLLLGQKISIVSNRPQTTRNNIRCIRTTGTSQMVFI-DTPGFHKP 68

Query: 280 ----TDDIVEKEGIKRTFLEVENADLILLLKEINS-------------KKE----ISFPK 318
               +D +VE  G   ++ EV   D+IL L E ++             KKE    I    
Sbjct: 69  KSKLSDYMVEVAG--ESYKEV---DVILFLVEEDTTIGKGDEFLIEKLKKEKTPVILVIN 123

Query: 319 NIDFIFIGTKSDLYSTYT--EEYDHL-----ISSFTGEGLEELINKIKSILSNKFKKLPF 371
            ID I   TK ++       E+YD +     IS+  GE + EL+  I+  L       P 
Sbjct: 124 KIDKI---TKEEILGKIKLYEKYDFIKEIVPISAMKGENINELVEVIEKYLPQGPMYFPE 180

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNE 397
            + + +   + +S+ +R   + SL E
Sbjct: 181 DMVTDRSERFVISELIREKILRSLKE 206


>gi|77456752|ref|YP_346257.1| GTP-binding protein, HSR1-like [Pseudomonas fluorescens Pf0-1]
 gi|77380755|gb|ABA72268.1| GTP-binding protein HflX [Pseudomonas fluorescens Pf0-1]
          Length = 433

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFN + K +V     +  T    L  +D
Sbjct: 182 VRSQREQSRRGRSRADIPTVSLVGYTNAGKSTLFNNVTKSEVYAADQLFATLDPTLRRLD 241

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           LD  G +V ++DT G IR     +  E  + T  E  N+DL+L
Sbjct: 242 LDDLGPIV-LADTVGFIRHLPHKL-VEAFRSTLEESSNSDLLL 282


>gi|284801878|ref|YP_003413743.1| GTP-binding protein YqeH [Listeria monocytogenes 08-5578]
 gi|284995020|ref|YP_003416788.1| GTP-binding protein YqeH [Listeria monocytogenes 08-5923]
 gi|284057440|gb|ADB68381.1| GTP-binding protein YqeH [Listeria monocytogenes 08-5578]
 gi|284060487|gb|ADB71426.1| GTP-binding protein YqeH [Listeria monocytogenes 08-5923]
          Length = 366

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     LV 
Sbjct: 157 LRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVLV- 215

Query: 271 ISDTAGI 277
             DT GI
Sbjct: 216 --DTPGI 220


>gi|239993709|ref|ZP_04714233.1| GTP-binding protein Era [Alteromonas macleodii ATCC 27126]
          Length = 303

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +L ID D + Y     DT G+ + 
Sbjct: 11  VAIVGRPNVGKSTLLNRLLGQKVSITSRKPQTTRHRILGIDTDGD-YQAIYVDTPGLHQD 69

Query: 281 DDIVEKEGIKR 291
               EK  I R
Sbjct: 70  ----EKRAINR 76


>gi|216264432|ref|ZP_03436424.1| GTP-binding protein Era [Borrelia burgdorferi 156a]
 gi|224532362|ref|ZP_03672992.1| GTP-binding protein Era [Borrelia burgdorferi WI91-23]
 gi|224533272|ref|ZP_03673866.1| GTP-binding protein Era [Borrelia burgdorferi CA-11.2a]
 gi|215980905|gb|EEC21712.1| GTP-binding protein Era [Borrelia burgdorferi 156a]
 gi|224512669|gb|EEF83040.1| GTP-binding protein Era [Borrelia burgdorferi WI91-23]
 gi|224513437|gb|EEF83794.1| GTP-binding protein Era [Borrelia burgdorferi CA-11.2a]
 gi|312147890|gb|ADQ30549.1| GTP-binding protein Era [Borrelia burgdorferi JD1]
 gi|312149136|gb|ADQ29207.1| GTP-binding protein Era [Borrelia burgdorferi N40]
          Length = 290

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 21/144 (14%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGI---R 278
            ILG  + GKS+L N++    ++I++ IP TTR+ +  I  D  G ++ I DT G    +
Sbjct: 7   AILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFI-DTPGFHLSK 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKN--IDFIFIGTKSD 330
           +  +I   + I  +  EVE   LIL + +I  K      K +   KN  I F+ I  K D
Sbjct: 66  KKFNIAMMKNIHSSIGEVE---LILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILNKID 122

Query: 331 LYSTYTEEYDHLISSFTGE-GLEE 353
           L +T  +E    I+ F  E G+E+
Sbjct: 123 LENTKIKE----ITQFLKEKGIED 142


>gi|146305671|ref|YP_001186136.1| GTP-binding protein, HSR1-related [Pseudomonas mendocina ymp]
 gi|145573872|gb|ABP83404.1| GTP-binding protein HflX [Pseudomonas mendocina ymp]
          Length = 433

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFNAL   +V     +  T    L  ++
Sbjct: 182 VRSQREQARRGRKRADIPSVSLVGYTNAGKSTLFNALTASEVYAADQLFATLDPTLRRLE 241

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           LD  G +V ++DT G IR     +  E  + T  E  N+DL+L
Sbjct: 242 LDDLGPIV-LADTVGFIRHLPHKL-VEAFRATLEESSNSDLLL 282


>gi|116071422|ref|ZP_01468691.1| putative GTP-binding protein, transporter associated [Synechococcus
           sp. BL107]
 gi|116066827|gb|EAU72584.1| putative GTP-binding protein, transporter associated [Synechococcus
           sp. BL107]
          Length = 555

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 32/206 (15%)

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+D +  S +  +  +L  +  + +H S  +L +  R   ++ ++G++NAGKSSL NAL 
Sbjct: 335 EKDRRAISRR--IERLLRDQQQLQAHRS--RLRDQRRGLPRVALVGYTNAGKSSLLNALC 390

Query: 241 KK---DVAIVTDIPGTTRDVLTIDLDL-----EGYLVKISDTAG-IRETDDIVEKEGIKR 291
            +   D  +  +    T D  T  LDL         + I+DT G IR+    +  E  + 
Sbjct: 391 GQRESDRVLAENKLFATLDPTTRKLDLPRPGERPQRMLITDTVGFIRDLPKPL-VEAFRA 449

Query: 292 TFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGT------------KSDL---YST 334
           T  E  +ADL+L++ ++     IS    +  +   +G+            + DL   +S 
Sbjct: 450 TLEEALDADLLLIVVDLADPDWISQLSTVHRLLDSLGSSALRRVVANQIDRCDLEAIHSI 509

Query: 335 YTEEYDHL-ISSFTGEGLEELINKIK 359
             +E D L +S+  G+GL+ L + ++
Sbjct: 510 RDQEPDALFLSAVRGDGLQGLQDWLR 535


>gi|118580562|ref|YP_901812.1| HSR1-like GTP-binding protein [Pelobacter propionicus DSM 2379]
 gi|118503272|gb|ABK99754.1| GTP-binding protein, HSR1-related protein [Pelobacter propionicus
           DSM 2379]
          Length = 305

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 9/78 (11%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           +GK G  +R    +++ G  N GKS+L N LA + +A V D P  T     IDL   G +
Sbjct: 108 RGKPGWPLR----VMVFGIPNVGKSTLINTLAGRSLARVGDKPAITTCAQQIDLK-NGII 162

Query: 269 VKISDTAGI--RETDDIV 284
             +SDT G+   E DD V
Sbjct: 163 --LSDTPGVLWPEMDDQV 178


>gi|255560185|ref|XP_002521110.1| GTP-binding protein-plant, putative [Ricinus communis]
 gi|223539679|gb|EEF41261.1| GTP-binding protein-plant, putative [Ricinus communis]
          Length = 599

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I  LKN   SH         I+    + I+G  N GKSSL N+L +  V  V   PG TR
Sbjct: 243 IKLLKNYSRSHD--------IKKSITVGIIGLPNVGKSSLINSLKRSHVVNVGATPGLTR 294

Query: 256 DVLTIDLDLEGYLVKISDTAGI 277
            +  + LD     VK+ D  G+
Sbjct: 295 SMQEVQLDKN---VKLLDCPGV 313


>gi|239917258|ref|YP_002956816.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein TIGR00650 [Micrococcus luteus NCTC 2665]
 gi|281414264|ref|ZP_06246006.1| hypothetical protein MlutN2_03508 [Micrococcus luteus NCTC 2665]
 gi|239838465|gb|ACS30262.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein TIGR00650 [Micrococcus luteus NCTC 2665]
          Length = 546

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 27/176 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L    V    A+   +  T R  +T D    G    +SDT G 
Sbjct: 324 VAIAGYTNAGKSSLLNRLTHAGVLVENALFATLDPTVRRAMTPD----GIGYTLSDTVGF 379

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI----------DFIF 324
                    E  + T  EV +AD+IL +      + + +I+  +++          + I 
Sbjct: 380 VRNLPTQLVEAFRSTLEEVADADVILHVVDGSHPDPEGQIAAVRSVFAEVDAHRIPEIIV 439

Query: 325 IGTKSDLYSTYT------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +                 E +  ++S+ TGEG++EL   I + +     +L   +P
Sbjct: 440 LNKADAADPAVVARIRSKEPHAVVVSARTGEGIDELERAIAATIPRPDVRLELLVP 495


>gi|330807232|ref|YP_004351694.1| GTP-binding protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375340|gb|AEA66690.1| GTP-binding protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 433

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFN + + DV     +  T    L  +D
Sbjct: 182 VRSQREQSRRGRKRADIPTVSLVGYTNAGKSTLFNNVTQSDVYAADQLFATLDPTLRRLD 241

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           LD  G +V ++DT G IR     +  E  + T  E  N+DL+L
Sbjct: 242 LDDLGPIV-LADTVGFIRHLPHKL-VEAFRATLEESSNSDLLL 282


>gi|195941463|ref|ZP_03086845.1| ribosomal biogenesis GTPase [Borrelia burgdorferi 80a]
          Length = 268

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKSS+ N L+ K  A V + PG T+++  + ++ E   + + D  GI   
Sbjct: 108 KVLIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKINEE---INLFDMPGILWH 164

Query: 281 DDIVEKEGIKRTFLE------VENADLILLLKEI 308
           + + +    K   L+      V+N DL L L EI
Sbjct: 165 NLVDQSIAKKLAILDMIKNEIVDNTDLALYLLEI 198


>gi|126654071|ref|ZP_01725897.1| ribosomal biogenesis GTPase [Bacillus sp. B14905]
 gi|126589451|gb|EAZ83598.1| ribosomal biogenesis GTPase [Bacillus sp. B14905]
          Length = 281

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 113 RAMIVGIPNVGKSTLINRLAKKNIAKTGNTPGVTKAQQWIKV---GKELELLDTPGI 166


>gi|333023648|ref|ZP_08451712.1| putative GTPase EngC [Streptomyces sp. Tu6071]
 gi|332743500|gb|EGJ73941.1| putative GTPase EngC [Streptomyces sp. Tu6071]
          Length = 369

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 16/147 (10%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQ---NFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
           W    T +    +ADL    E       + +S     ++L +  D    + +  L +++ 
Sbjct: 137 WESGATPVLVLTKADLVPDPETRAHLLVDAASAAPGVEVLAVSGDTGEGVPE--LRQVLA 194

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD---VAIVTDIPGTTRDVLT----IDLDLEGYLVK 270
            G   V+LG S AGKS+L NALA+     V  V D  G  R   T    + L   G L+ 
Sbjct: 195 GGTS-VLLGRSGAGKSTLANALAEAPHMRVQAVRDQDGKGRHTTTTRNLVPLPAGGVLI- 252

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVE 297
             DT G+R         G+ + F E+E
Sbjct: 253 --DTPGLRGVGLWDAGHGVGQVFAEIE 277


>gi|321312052|ref|YP_004204339.1| GTPase YqeH [Bacillus subtilis BSn5]
 gi|320018326|gb|ADV93312.1| GTPase YqeH [Bacillus subtilis BSn5]
          Length = 366

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  RNG  + ++G +N GKS+  N + K     +D+   +  PGTT D + I LD    L
Sbjct: 154 EHYRNGKDVYVVGCTNVGKSTFINRIIKEVSGEEDIITTSQFPGTTLDAIEIPLDDGSSL 213

Query: 269 VKISDTAGI 277
               DT GI
Sbjct: 214 Y---DTPGI 219


>gi|321311016|ref|YP_004193345.1| ribosomal biogenesis GTPase RbgA [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802860|emb|CBY93506.1| ribosomal biogenesis GTPase RbgA [Mycoplasma haemofelis str.
           Langford 1]
          Length = 262

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 5/115 (4%)

Query: 171 FIEADLDFSEE-EDVQNFSSKEVLNDILFL-KNDISSHISQGKLGEIIRNGYKIVILGHS 228
           F ++DL  SE  E+  NF  +   N IL L K  +    ++ +    +   +KI+++G  
Sbjct: 59  FSKSDLASSEGLENSFNFKIQSNRNRILHLIKKALQEERNRLQESGYLNPHFKILVVGMP 118

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           N GKS+L N L  K ++   + PG TR +    L    +L    D+ GI    DI
Sbjct: 119 NTGKSTLINLLKNKKISKAANTPGITRKITQYYLGDNLWLF---DSPGIFFYQDI 170


>gi|328944013|ref|ZP_08241478.1| GTP-binding protein Era [Atopobium vaginae DSM 15829]
 gi|327491982|gb|EGF23756.1| GTP-binding protein Era [Atopobium vaginae DSM 15829]
          Length = 332

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  + GKS+L NA     +AI + +  TTR  +   L  +   + I DT G+ +  
Sbjct: 42  VSLVGRPSVGKSTLLNACYGGKIAITSRVAQTTRRRMRAVLTDDSSQIVIVDTPGLHKPK 101

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D + KE  +    E+++ D++  L  I++ +E+
Sbjct: 102 DALGKELNQTALAELKDVDVVAHL--IDASQEV 132


>gi|84494575|ref|ZP_00993694.1| hypothetical protein JNB_07254 [Janibacter sp. HTCC2649]
 gi|84384068|gb|EAP99948.1| hypothetical protein JNB_07254 [Janibacter sp. HTCC2649]
          Length = 343

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 14/76 (18%)

Query: 214 EIIRN---GYKIVILGHSNAGKSSLFNAL---AKKDVAIVTDIPGTTRDVLTIDL----- 262
           E +R+   G+  V++GHS  GKS+L NAL   A + V +V D+ G  R   T  +     
Sbjct: 199 EAVRDALRGHVSVLVGHSGVGKSTLVNALVPNAYRAVGVVNDVTGRGRHTSTSAVALRLP 258

Query: 263 DLEGYLVKISDTAGIR 278
           D +G+++   DT GIR
Sbjct: 259 DGDGWVI---DTPGIR 271


>gi|317182792|dbj|BAJ60576.1| GTPase EngB [Helicobacter pylori F57]
          Length = 208

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 23/34 (67%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +VILG SN GKSS  NAL  K++A  +  PG TR
Sbjct: 27  MVILGRSNVGKSSFINALLGKNLAKSSATPGKTR 60


>gi|313114169|ref|ZP_07799721.1| GTP-binding protein Era [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623578|gb|EFQ06981.1| GTP-binding protein Era [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 295

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N L  + VAIVT  P TTR  +T  +        + DT G+ +  
Sbjct: 1   MAVIGRPNVGKSSLTNLLVGEKVAIVTSKPQTTRTRITGVITRGPLQYVLLDTPGVHKAR 60

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
           + + K   K     + + D+ ++L E
Sbjct: 61  NKLGKRMDKTASDSIADVDVSMMLFE 86


>gi|294947742|ref|XP_002785471.1| GTP-binding protein, putative [Perkinsus marinus ATCC 50983]
 gi|239899382|gb|EER17267.1| GTP-binding protein, putative [Perkinsus marinus ATCC 50983]
          Length = 319

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL-------DLEGYLVKISD 273
           +   G SNAGKSSL N L   + VA  +  PG TR + T DL       + +G  ++I D
Sbjct: 98  VAFCGRSNAGKSSLVNGLLFGRQVARASKTPGRTRQLFTFDLGRDEHIREGKGRPLRIVD 157

Query: 274 TAGI 277
             G+
Sbjct: 158 LPGL 161


>gi|150026443|ref|YP_001297269.1| GTP-binding protein HflX [Flavobacterium psychrophilum JIP02/86]
 gi|149772984|emb|CAL44468.1| GTP-binding protein HflX [Flavobacterium psychrophilum JIP02/86]
          Length = 413

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 18/127 (14%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           D      +G  G ++R    + ++G++N GKS+L NA+ K DV +   +        T+D
Sbjct: 186 DKQQATQRGNRGAMVR----VALVGYTNVGKSTLMNAVGKSDVFVENKL------FATLD 235

Query: 262 LDLEGYLVK-----ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
             +   ++K     +SDT G          +  K T  EV  ADL+L + +I+ +    F
Sbjct: 236 TTVRKVVIKNLPFLLSDTVGFIRKLPTQLVDSFKSTLDEVREADLLLHVVDISHQ---DF 292

Query: 317 PKNIDFI 323
             +ID +
Sbjct: 293 EDHIDAV 299


>gi|153954033|ref|YP_001394798.1| ribosomal biogenesis GTPase [Clostridium kluyveri DSM 555]
 gi|219854647|ref|YP_002471769.1| hypothetical protein CKR_1304 [Clostridium kluyveri NBRC 12016]
 gi|146346914|gb|EDK33450.1| Predicted GTP-binding protein [Clostridium kluyveri DSM 555]
 gi|219568371|dbj|BAH06355.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 280

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 11/92 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           + +++G  N GKSS  N +AK  +A + D PG T+    I   L    +++ DT GI   
Sbjct: 122 RAMVVGIPNVGKSSFINKMAKSSIAKIGDRPGVTKSKQWIKTKLG---IELMDTPGILWP 178

Query: 278 ----RETD-DIVEKEGIKRTFLEVENADLILL 304
                ET  ++     IK   +++EN  L+LL
Sbjct: 179 KLESEETQLNLAFTGAIKDEIMDIENLALMLL 210


>gi|329728031|gb|EGG64475.1| GTP-binding protein HflX [Staphylococcus epidermidis VCU144]
          Length = 413

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++I ++G++NAGKSS FN LA     +K++   T  P T +    I ++ EG+ + ISDT
Sbjct: 206 FQIALVGYTNAGKSSWFNVLANEETYEKNILFATLDPKTRQ----IQVN-EGFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + AD+++
Sbjct: 261 VGFIQKLPTTLVAAFKSTLEEAKGADVLM 289


>gi|290769994|gb|ADD61761.1| putative protein [uncultured organism]
          Length = 322

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 5/107 (4%)

Query: 204 SSHISQGKLGEIIRN--GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTI 260
           +S I+ G   E  R   G+ +  +G  N GKS+L N +  + +AI ++ P TTR+ + T+
Sbjct: 9   ASGITGGAKAENTRTKTGF-VTFIGRPNVGKSTLMNQIIGQKIAITSNKPQTTRNRIQTV 67

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
             D  G +V + DT GI +  + + +  +      +   DLI  L E
Sbjct: 68  YTDERGQIVFV-DTPGIHKAKNKLGEYMVGAAEKTISEVDLICWLVE 113


>gi|300311261|ref|YP_003775353.1| GTP-binding ERA protein [Herbaspirillum seropedicae SmR1]
 gi|300074046|gb|ADJ63445.1| GTP-binding ERA protein [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 8/121 (6%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R GY I I+G  N GKS+L N L    V+I +    TTR  +T    +E       DT G
Sbjct: 20  RCGY-IAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPG 78

Query: 277 IRETDDIVEKEGIKRTFLE-VENADLILLLKEINS----KKEI--SFPKNIDFIFIGTKS 329
            +        + + RT    +  AD+IL + E  +     K++    P N+  I +  K+
Sbjct: 79  FQTRHSNALNKTLNRTVTNTLTAADVILFVIEAGTFGPADKQVLDLLPANVPCILVLNKA 138

Query: 330 D 330
           D
Sbjct: 139 D 139


>gi|254774754|ref|ZP_05216270.1| GTP-binding protein Era [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 299

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    VAI +  P TTR  +   +  E + + + DT G
Sbjct: 5   RSGF-VCLVGRPNTGKSTLTNALVGTKVAITSMRPQTTRHTIRGIVHREDFQIILVDTPG 63

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ K   + ++ T+ EV+
Sbjct: 64  LHRPRTLLGKRLNDLVRDTYAEVD 87


>gi|257065788|ref|YP_003152044.1| small GTP-binding protein [Anaerococcus prevotii DSM 20548]
 gi|256797668|gb|ACV28323.1| small GTP-binding protein [Anaerococcus prevotii DSM 20548]
          Length = 382

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           I I G +NAGKS+  N +   D AIV+++ GTT D +   +++  +  V   DTAG
Sbjct: 11  IGIFGKTNAGKSTFLNYMTGTDTAIVSEVAGTTTDPVRKAMEITDFGPVLFIDTAG 66


>gi|26250384|ref|NP_756424.1| hypothetical protein c4564 [Escherichia coli CFT073]
 gi|26110814|gb|AAN82998.1|AE016769_113 Conserved hypothetical protein [Escherichia coli CFT073]
          Length = 294

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 83/199 (41%), Gaps = 15/199 (7%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHSVIHYEPVIGIMGKSGTGKSSLCNAIFQSHICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRET--DDIVEKEGIKRTFLEVENADLILLLK 306
            + G TR    + L +    + + D  GI ET   D   +E  ++   E++    IL   
Sbjct: 68  PLNGCTRQAHRLTLQIGERRMTLVDLPGIGETPQHDQEYRELYRQLLPELDLIIWILRAD 127

Query: 307 EINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEY---DHLISSFTGEGLEELI 355
           E     +I+  + +         F+F+ + +D      EE+   +   S      L  + 
Sbjct: 128 ERAYAADIAMHQFLLNEGADPSRFLFVLSHADRVFP-AEEWNATEKCPSRHQELSLATVT 186

Query: 356 NKIKSILSNKFKKLPFSIP 374
            ++ ++  + F  LP + P
Sbjct: 187 ARVATLFPSSFPVLPVAAP 205


>gi|15600136|ref|NP_253630.1| GTP-binding protein [Pseudomonas aeruginosa PAO1]
 gi|9951223|gb|AAG08328.1|AE004907_6 probable GTP-binding protein [Pseudomonas aeruginosa PAO1]
          Length = 433

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFN+L   +V     +  T    L  + 
Sbjct: 182 VRSQREQARRGRKRADIPAVSLVGYTNAGKSTLFNSLTASEVYAANQLFATLDPTLRRLQ 241

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           LD  G +V ++DT G IR     +  E  + T  E  NADL+L
Sbjct: 242 LDDLGPVV-LADTVGFIRHLPHKL-VEAFRATLEESSNADLLL 282


>gi|16079621|ref|NP_390445.1| GTP-binding protein YqeH [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310492|ref|ZP_03592339.1| GTP-binding protein YqeH [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221314816|ref|ZP_03596621.1| GTP-binding protein YqeH [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221319738|ref|ZP_03601032.1| GTP-binding protein YqeH [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324016|ref|ZP_03605310.1| GTP-binding protein YqeH [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|1730981|sp|P54453|YQEH_BACSU RecName: Full=Uncharacterized protein yqeH
 gi|1303788|dbj|BAA12444.1| YqeH [Bacillus subtilis]
 gi|2635013|emb|CAB14509.1| GTPase involved in ribosome 30S assembly [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291485017|dbj|BAI86092.1| GTP-binding protein YqeH [Bacillus subtilis subsp. natto BEST195]
          Length = 366

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  RNG  + ++G +N GKS+  N + K     +D+   +  PGTT D + I LD    L
Sbjct: 154 EHYRNGKDVYVVGCTNVGKSTFINRIIKEVSGEEDIITTSQFPGTTLDAIEIPLDDGSSL 213

Query: 269 VKISDTAGI 277
               DT GI
Sbjct: 214 Y---DTPGI 219


>gi|75761897|ref|ZP_00741822.1| GTP-binding protein era [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218899466|ref|YP_002447877.1| GTP-binding protein Era [Bacillus cereus G9842]
 gi|74490605|gb|EAO53896.1| GTP-binding protein era [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218541393|gb|ACK93787.1| GTP-binding protein Era [Bacillus cereus G9842]
          Length = 301

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   D
Sbjct: 3   RKGYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           T GI +    +    +K     ++  D++L +
Sbjct: 63  TPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFM 94


>gi|332159398|ref|YP_004424677.1| GTP-binding protein hflX [Pyrococcus sp. NA2]
 gi|331034861|gb|AEC52673.1| GTP-binding protein hflX [Pyrococcus sp. NA2]
          Length = 425

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 2/88 (2%)

Query: 219 GYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           G+ +V L G++NAGKS+L NAL  ++V   + +  TT D  T    ++G ++ ++DT G 
Sbjct: 186 GFVLVALAGYTNAGKSTLLNALTGEEVEAKSQM-FTTLDTTTRRFKVKGKMLLVTDTVGF 244

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305
            +       E    T  E+  +D+I+L+
Sbjct: 245 IDGLPPFIVEAFHSTLEEIVKSDIIILV 272


>gi|319440588|ref|ZP_07989744.1| GTPase Era [Corynebacterium variabile DSM 44702]
          Length = 325

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +      V + DT G
Sbjct: 32  RSGF-VSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGIVHRRDSQVIVVDTPG 90

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ +   E +K T+ +V+
Sbjct: 91  LHRPRTLLGERLNEVVKETYADVD 114


>gi|254238342|ref|ZP_04931665.1| hypothetical protein PACG_04477 [Pseudomonas aeruginosa C3719]
 gi|126170273|gb|EAZ55784.1| hypothetical protein PACG_04477 [Pseudomonas aeruginosa C3719]
          Length = 433

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFN+L   +V     +  T    L  + 
Sbjct: 182 VRSQREQARRGRKRADIPAVSLVGYTNAGKSTLFNSLTASEVYAANQLFATLDPTLRRLQ 241

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           LD  G +V ++DT G IR     +  E  + T  E  NADL+L
Sbjct: 242 LDDLGPVV-LADTVGFIRHLPHKL-VEAFRATLEESSNADLLL 282


>gi|115375124|ref|ZP_01462392.1| tRNA modification GTPase TrmE [Stigmatella aurantiaca DW4/3-1]
 gi|115367870|gb|EAU66837.1| tRNA modification GTPase TrmE [Stigmatella aurantiaca DW4/3-1]
          Length = 69

 Score = 39.3 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436
           +RH   L +    L  A    +   L++++  + LA  +LG+++G    E LLD IF +F
Sbjct: 6   ERHADALRRAAEALGRAHEASRLSTLEVLSGEVGLALEALGEVSGTSASEALLDAIFQRF 65

Query: 437 CIGK 440
           CIGK
Sbjct: 66  CIGK 69


>gi|39998358|ref|NP_954309.1| ferrous iron transport protein B [Geobacter sulfurreducens PCA]
 gi|39985304|gb|AAR36659.1| ferrous iron transport protein B [Geobacter sulfurreducens PCA]
          Length = 747

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L  + +    + + G+ N+GKS+L NA+A   +  V +  G T +      + +G  +++
Sbjct: 24  LRPVTKRAITVAVAGNPNSGKSTLINAIAGTRLQ-VGNWAGVTVEKKEASFEFQGRKIRL 82

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            D  G        ++E I R +L  E  DLI+
Sbjct: 83  VDLPGTYSLSPYTQEEIIARDYLVHERPDLII 114


>gi|47095444|ref|ZP_00233054.1| GTPase, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|254898343|ref|ZP_05258267.1| GTP-binding protein YqeH [Listeria monocytogenes J0161]
 gi|254912165|ref|ZP_05262177.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936493|ref|ZP_05268190.1| GTP-binding protein YqeH [Listeria monocytogenes F6900]
 gi|47016265|gb|EAL07188.1| GTPase, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|258609086|gb|EEW21694.1| GTP-binding protein YqeH [Listeria monocytogenes F6900]
 gi|293590137|gb|EFF98471.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 366

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +RNG  + ++G +N GKS+L N + K+     +V   +  PGTT D + I L     LV 
Sbjct: 157 LRNGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVLV- 215

Query: 271 ISDTAGI 277
             DT GI
Sbjct: 216 --DTPGI 220


>gi|330501624|ref|YP_004378493.1| HSR1-like GTP-binding protein [Pseudomonas mendocina NK-01]
 gi|328915911|gb|AEB56742.1| GTP-binding protein, HSR1-related protein [Pseudomonas mendocina
           NK-01]
          Length = 433

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFNAL   +V     +  T    L  ++
Sbjct: 182 VRSQREQARRGRKRADIPSVSLVGYTNAGKSTLFNALTTSEVYAADQLFATLDPTLRRLE 241

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           LD  G +V ++DT G IR     +  E  + T  E  N+DL+L
Sbjct: 242 LDDLGPIV-LADTVGFIRHLPHKL-VEAFRATLEESSNSDLLL 282


>gi|307946584|ref|ZP_07661919.1| GTP-binding protein Era [Roseibium sp. TrichSKD4]
 gi|307770248|gb|EFO29474.1| GTP-binding protein Era [Roseibium sp. TrichSKD4]
          Length = 313

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N L    V+IVT    TTR ++      E   +   DT G
Sbjct: 20  RAGF-VALIGAPNAGKSTLLNQLVGTKVSIVTHKVQTTRAIVRGIAMHEASQLIFVDTPG 78

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           I +    +++  +   +    +ADL  LL  I+++K I
Sbjct: 79  IFKPKRRLDRAMVDTAWSGARDADLTALL--IDARKGI 114


>gi|271502152|ref|YP_003335178.1| GTP-binding proten HflX [Dickeya dadantii Ech586]
 gi|270345707|gb|ACZ78472.1| GTP-binding proten HflX [Dickeya dadantii Ech586]
          Length = 433

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 37/216 (17%)

Query: 194 NDILFLKNDISSHIS----------QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
            D   L+N IS  +S          QG+          + ++G++NAGKS+LFN +   D
Sbjct: 162 TDRRLLRNRISQILSRLERVEKQREQGRRARTRAEVPTVSLVGYTNAGKSTLFNRMTAAD 221

Query: 244 VAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300
           V     +  T    L  I++D  G  V ++DT G IR+   D+V     K T  E   A 
Sbjct: 222 VYAADQLFATLDPTLRRIEVDDVGDTV-LADTVGFIRDLPHDLV--AAFKATLQETREAT 278

Query: 301 LILLL---------KEINSKKEISF---PKNIDFIFIGTKSDLYSTYTEEYDH------- 341
           L+L +         + I++  E+       +I F+ +  K D         D        
Sbjct: 279 LLLHVVDASDARVDENIDAVNEVLAEIEADDIPFLLVMNKIDRLENIAPRIDRDEENRPV 338

Query: 342 --LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
              +S+ TGEG+  L   +   LS +       +P+
Sbjct: 339 RVWLSAQTGEGIPLLFQALTERLSGEIAHYSLHLPA 374


>gi|221217963|ref|ZP_03589430.1| GTP-binding protein Era [Borrelia burgdorferi 72a]
 gi|221192269|gb|EEE18489.1| GTP-binding protein Era [Borrelia burgdorferi 72a]
          Length = 290

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 21/144 (14%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGI---R 278
            ILG  + GKS+L N++    ++I++ IP TTR ++  I  D  G ++ I DT G    +
Sbjct: 7   AILGRPSTGKSTLLNSICGHKISIISPIPQTTRNNIKGIFTDDRGQIIFI-DTPGFHLSK 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKN--IDFIFIGTKSD 330
           +  +I   + I  +  EVE   LIL + +I  K      K +   KN  I F+ I  K D
Sbjct: 66  KKFNIAMMKNIHSSIGEVE---LILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILNKID 122

Query: 331 LYSTYTEEYDHLISSFTGE-GLEE 353
           L +T  +E    I+ F  E G+E+
Sbjct: 123 LENTKIKE----ITQFLKEKGIED 142


>gi|153853792|ref|ZP_01995148.1| hypothetical protein DORLON_01139 [Dorea longicatena DSM 13814]
 gi|149753542|gb|EDM63473.1| hypothetical protein DORLON_01139 [Dorea longicatena DSM 13814]
          Length = 298

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 8/90 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+L N L  + +AI ++ P TTR+    VLT D   +G +V + DT GI
Sbjct: 10  VTLIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVLTTD---DGQIVFV-DTPGI 65

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKE 307
            +  + + +  +      +   D++L L E
Sbjct: 66  HKAKNKLGEYMVNVAERTLNEVDVVLWLVE 95


>gi|326390100|ref|ZP_08211661.1| GTP-binding proten HflX [Thermoanaerobacter ethanolicus JW 200]
 gi|325993748|gb|EGD52179.1| GTP-binding proten HflX [Thermoanaerobacter ethanolicus JW 200]
          Length = 413

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 14/96 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDI-----PGTTRDVLTIDLDLEGYLVKISDTAG 276
           I I+G++NAGKS+L NAL   +V +   +     P   R VL       G  V + DT G
Sbjct: 201 IAIVGYTNAGKSTLLNALTNAEVYVENKLFATLDPTARRLVLP-----SGREVILIDTVG 255

Query: 277 -IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            IR+   D+V  E  K T  EV+ ADL+L + ++ S
Sbjct: 256 FIRKLPHDLV--EAFKSTLEEVKYADLLLHVIDVTS 289


>gi|325299958|ref|YP_004259875.1| GTP-binding proten HflX [Bacteroides salanitronis DSM 18170]
 gi|324319511|gb|ADY37402.1| GTP-binding proten HflX [Bacteroides salanitronis DSM 18170]
          Length = 421

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 22/123 (17%)

Query: 192 VLNDILFLKN-----DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-- 244
           +LN +  LK      D      +   G +IR    + ++G++N GKS+L N LAK DV  
Sbjct: 188 ILNRMSLLKQRLAEIDTQKSTQRKNRGRLIR----VALVGYTNVGKSTLMNLLAKSDVFA 243

Query: 245 --AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300
              +   +  T R V+  +L        +SDT G IR+   D+V  +  K T  EV  AD
Sbjct: 244 ENKLFATLDTTVRKVIIDNLPF-----LLSDTVGFIRKLPTDLV--DSFKSTLDEVREAD 296

Query: 301 LIL 303
           L++
Sbjct: 297 LLV 299


>gi|255322165|ref|ZP_05363311.1| GTP-binding protein Era [Campylobacter showae RM3277]
 gi|255300538|gb|EET79809.1| GTP-binding protein Era [Campylobacter showae RM3277]
          Length = 289

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRETDD 282
           I+G +NAGKSSL N L    + IV+     TR  ++ I ++ E  +V  +DT G+ E++ 
Sbjct: 8   IIGRTNAGKSSLLNFLLDAKITIVSHKQNATRRKISGIVMNDEDQIV-FTDTPGLHESNK 66

Query: 283 IVEKEGIKRTFLEVENADLILLLKEIN 309
            + K  I      + + D I+ L  I+
Sbjct: 67  TLNKLMINEAIKSMGDCDAIVFLAPIH 93


>gi|325982761|ref|YP_004295163.1| GTP-binding proten HflX [Nitrosomonas sp. AL212]
 gi|325532280|gb|ADZ27001.1| GTP-binding proten HflX [Nitrosomonas sp. AL212]
          Length = 390

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 77/178 (43%), Gaps = 29/178 (16%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           N   + I+G++NAGKS+ FN L +   +   D    T D  T  L + EG  V ISDT G
Sbjct: 195 NSLTVSIVGYTNAGKSTFFNKLTRAQ-SYAADQLFATLDTTTRKLFIEEGSTVVISDTVG 253

Query: 277 -IRETDDIVEKEGIKRTFLEVENADLIL------------LLKEINS-KKEISFPKNIDF 322
            IRE    +     + T  E   ADL+L             +KE+N   KEI     I  
Sbjct: 254 FIRELPHTL-IAAFRATLEETVQADLLLHVIDASNSNSDEQIKEVNKILKEIG-ADVIPQ 311

Query: 323 IFIGTKSDLYST-------YTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKL 369
           I I  K DL            +EY  +    +S+ TGEG+E +   +   +    KKL
Sbjct: 312 ILIFNKIDLIDATLRSAGCVRDEYGRISRIRLSAETGEGVEFVRQALTETILENSKKL 369


>gi|221122361|ref|XP_002163002.1| PREDICTED: similar to Guanine nucleotide binding protein-like 2
           (nucleolar) [Hydra magnipapillata]
          Length = 639

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           GKL +  +N   +  +G+ N GKSS+ N L KK V     +PG T+    + L    YL+
Sbjct: 304 GKLHQDKKN-ISVGFIGYPNVGKSSIINTLKKKKVCKAAPVPGETKVWQYVTLMRRIYLI 362

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVEN 298
              D  G+    D  E + + +  + VEN
Sbjct: 363 ---DCPGVVYPSDDSETDIVLKGVVRVEN 388


>gi|253699930|ref|YP_003021119.1| GTP-binding protein HSR1-related [Geobacter sp. M21]
 gi|251774780|gb|ACT17361.1| GTP-binding protein HSR1-related protein [Geobacter sp. M21]
          Length = 299

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 219 GYKI--VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-------DLEGYLV 269
           GY I  +++G  N GKS+L N LA K +A V D P  T     IDL       D  G L 
Sbjct: 112 GYPIRTMVVGIPNVGKSTLINTLAGKSIAKVGDKPAVTLKPQQIDLRNGILLFDTPGLLW 171

Query: 270 KISDTAG 276
            + D  G
Sbjct: 172 PVMDDQG 178


>gi|315607419|ref|ZP_07882415.1| GTP-binding protein Era [Prevotella buccae ATCC 33574]
 gi|315250851|gb|EFU30844.1| GTP-binding protein Era [Prevotella buccae ATCC 33574]
          Length = 293

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ E   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTEDTQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  +  +   + +AD++L + ++    E    KN+DF+
Sbjct: 69  MQEMMLAFSESALADADVLLYVTDVVENPE----KNVDFL 104


>gi|326791286|ref|YP_004309107.1| GTP-binding proten HflX [Clostridium lentocellum DSM 5427]
 gi|326542050|gb|ADZ83909.1| GTP-binding proten HflX [Clostridium lentocellum DSM 5427]
          Length = 418

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 27/175 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG-IRE 279
           + I+G++NAGKS+L N L+  DV +   +  T  D  T  + L  G  + ++DT G IR+
Sbjct: 203 VAIVGYTNAGKSTLLNQLSGSDVYVQNQLFATL-DPTTRGITLPSGSEILLTDTVGFIRK 261

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFP-------KNIDFIFIGT 327
               + K     T  E + AD+IL + +++S      +++ +         +I  + +  
Sbjct: 262 LPHHLVK-AFYSTLEEAKYADIILHVMDVSSPHLETHQQVVYETLSRLQISDIPIVAVYN 320

Query: 328 KSDLYSTYTEE--------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D   T+ E+        Y+  IS+  G G E L++ ++ IL +  +     +P
Sbjct: 321 KID---THVEDYPKDEHATYETYISAKEGIGCEHLLSVLEEILYSNMQAFDIDVP 372


>gi|295320974|gb|ADG01352.1| tRNA modification GTPase TrmE [Clostridium botulinum F str. 230613]
          Length = 153

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 19/142 (13%)

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF-----------TGEGLEELINKIKSIL 362
           + F KN  +I +  K DL     EE +H I                 GL EL   IK++ 
Sbjct: 16  MDFIKNKKYIVLLNKLDLNKDLNEE-NHFIKELDSKYIIKTSVKNNSGLNELKECIKNLF 74

Query: 363 SN---KFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
            +   K  +L  +   H+  L    ++ ++ +E  S    +  +D+ + ++R A   LG+
Sbjct: 75  FSGEIKSDELTVTNARHQEALIRSRESCIQAIETLS---DEISIDLASIDIRNAWKYLGE 131

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           ITG    E ++D IFS+FC+GK
Sbjct: 132 ITGDTLDENIIDKIFSEFCLGK 153


>gi|293366730|ref|ZP_06613406.1| GTP-binding protein HflX [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319031|gb|EFE59401.1| GTP-binding protein HflX [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 416

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++I ++G++NAGKSS FN LA     +K++   T  P T +    I ++ EG+ + ISDT
Sbjct: 209 FQIALVGYTNAGKSSWFNVLANEETYEKNILFATLDPKTRQ----IQVN-EGFNLIISDT 263

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + AD+++
Sbjct: 264 VGFIQKLPTTLVAAFKSTLEEAKGADVLM 292


>gi|258654106|ref|YP_003203262.1| GTP-binding proten HflX [Nakamurella multipartita DSM 44233]
 gi|258557331|gb|ACV80273.1| GTP-binding proten HflX [Nakamurella multipartita DSM 44233]
          Length = 487

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 31/178 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L    V    A+   +  TTR   T D    G +  ++DT G 
Sbjct: 269 VSIAGYTNAGKSSLLNRLTDAGVLVEDALFATLDPTTRRSRTTD----GRVYTLTDTVGF 324

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPK---------NIDFIFI 325
                    E  + T  E+ +ADL+L +    + N + ++S  +         ++  I +
Sbjct: 325 VRHLPHQLVESFRSTLEEIGDADLLLHVVDGSDENPEAQVSAVREVLGEIDALSVAEIIV 384

Query: 326 GTKSDLYSTYT-EEYDHL------ISSFTGEGLEELINKIKSILSNKFKK----LPFS 372
             K D     T     H+      +S+ TG G++EL ++I + L +        +PFS
Sbjct: 385 VNKIDAADEMTLTRLRHVLPGAVFVSARTGAGIDELRDRIAAALPDPAVAVNVLMPFS 442


>gi|91201399|emb|CAJ74459.1| hypothetical GTPase protein [Candidatus Kuenenia stuttgartiensis]
          Length = 225

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           RN   +   G +NAGKSS   AL   D  ++  IPG+T++V    L  +G  + I+DT G
Sbjct: 40  RNTIIVSFYGPTNAGKSSGVKALFGIDTGLIHPIPGSTKEVSVWTLP-DG--LSIADTPG 96

Query: 277 IRETDD 282
           +++ +D
Sbjct: 97  LQDIND 102


>gi|89098663|ref|ZP_01171545.1| GTPase family protein [Bacillus sp. NRRL B-14911]
 gi|89086625|gb|EAR65744.1| GTPase family protein [Bacillus sp. NRRL B-14911]
          Length = 281

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I+G  N GKS+L N LAKK++A   ++PG T+    I     G  +++ DT GI
Sbjct: 115 MIVGIPNVGKSTLINRLAKKNIAKTGNMPGVTKAQQWIK---AGKEMELLDTPGI 166


>gi|119383630|ref|YP_914686.1| GTPase EngB [Paracoccus denitrificans PD1222]
 gi|119373397|gb|ABL68990.1| small GTP-binding protein [Paracoccus denitrificans PD1222]
          Length = 216

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           ++   G SNAGKSSL NAL  +K +A  ++ PG T+++    L    YLV +
Sbjct: 46  EVCFAGRSNAGKSSLINALTGRKSLARASNTPGRTQEINYFTLGERAYLVDL 97


>gi|311895955|dbj|BAJ28363.1| putative GTP-binding protein Era homolog [Kitasatospora setae
           KM-6054]
          Length = 309

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   + G  NAGKS+L NAL    VAI +D P TTR  +   +      + + DT G
Sbjct: 9   RSGFACFV-GRPNAGKSTLTNALVGTKVAITSDRPQTTRHTVRGIVHRPDSQLVLVDTPG 67

Query: 277 IRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEISFPKNIDFIFIGT 327
           + +   ++ +   + ++ T+ EV+       AD  L   +    KE++  +    + I T
Sbjct: 68  LHKPRTLLGERLNDLVRTTWAEVDVIGFCVPADQKLGPGDKFIAKELAEIRKTPKVAIVT 127

Query: 328 KSDLYST 334
           K+DL  +
Sbjct: 128 KTDLVDS 134


>gi|301166254|emb|CBW25829.1| putative GTPase [Bacteriovorax marinus SJ]
          Length = 324

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           +++ I+ G  GE  R  ++++++G  N GKS+L N+L  +  A   D PG T+    I L
Sbjct: 146 VANRIASGGSGEKTRK-FRMMMVGLPNTGKSTLINSLGGRKAAKSGDKPGLTQSQQWIKL 204

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGI 289
             +   +++ DT GI        +EG+
Sbjct: 205 AGD---IELLDTPGIMPRKIETREEGM 228


>gi|260663501|ref|ZP_05864391.1| ribosome biogenesis GTPase YqeH [Lactobacillus fermentum 28-3-CHN]
 gi|260552042|gb|EEX25095.1| ribosome biogenesis GTPase YqeH [Lactobacillus fermentum 28-3-CHN]
          Length = 374

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 15/103 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N + K+     D+   +  PGTT D + I L+ +G+ 
Sbjct: 164 EKYRQGRDVYVVGVTNVGKSTLINQIIKQRTGVEDLITTSRFPGTTLDKIEIPLE-DGH- 221

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            ++ DT GI   + +          L  E+  L+   KEI  K
Sbjct: 222 -ELVDTPGIIHQEQMAH-------VLPAEDLRLVAPQKEIKPK 256


>gi|157118002|ref|XP_001658960.1| GTP-binding protein hflx [Aedes aegypti]
 gi|108875896|gb|EAT40121.1| GTP-binding protein hflx [Aedes aegypti]
          Length = 518

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 38/193 (19%)

Query: 199 LKNDISSHISQGKLGEIIRN-----GYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           LKN++++  S     E++RN      Y IV ++G++NAGK+SL  AL ++      D   
Sbjct: 263 LKNELATIRSHR---ELLRNKRKQKAYPIVAVVGYTNAGKTSLIKALTEEKSLEPKDQLF 319

Query: 253 TTRDVLT----IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
            T DV      +   LE   V   DT G          E    T  +   AD+I+ ++++
Sbjct: 320 ATLDVTAHAGLLPCKLE---VLFMDTVGFMADIPTGLIECFVATLEDAMLADVIVHVQDV 376

Query: 309 N------SKKEI---------------SFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSF 346
           +       KK +               S PK  + I +G K DL  T  +  D HL+SS 
Sbjct: 377 SHENFLEQKKHVETTLSSLLKTTGVASSHPKLDNVINVGNKVDLLPTTEKPTDMHLVSSK 436

Query: 347 TGEGLEELINKIK 359
           T  G+ EL+ +I+
Sbjct: 437 TLHGINELLQEIE 449


>gi|68535678|ref|YP_250383.1| GTP-binding protein Era [Corynebacterium jeikeium K411]
 gi|68263277|emb|CAI36765.1| putative GTP-binding protein [Corynebacterium jeikeium K411]
          Length = 336

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  E   + + DT G
Sbjct: 43  RSGF-VSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGIVHREDAQIILVDTPG 101

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ +   E +K T+ +V+
Sbjct: 102 LHRPRTLLGERLNEVVKETYSDVD 125


>gi|150016213|ref|YP_001308467.1| ribosome biogenesis GTP-binding protein YsxC [Clostridium
           beijerinckii NCIMB 8052]
 gi|189037172|sp|A6LT31|ENGB_CLOB8 RecName: Full=Probable GTP-binding protein EngB
 gi|149902678|gb|ABR33511.1| GTP-binding protein, HSR1-related [Clostridium beijerinckii NCIMB
           8052]
          Length = 198

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 27/134 (20%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR---------DVLTIDLDLE 265
           I N  ++  +G SN GKSSL N+L  +K +A V+  PG TR         D   +DL   
Sbjct: 20  IDNRVEVAFVGRSNVGKSSLINSLTNRKKLAKVSQTPGKTRLVNFFLINDDFYLVDLPGY 79

Query: 266 GYLVKIS----DTAGIRETDDIVEKEGIKRTFLEVEN-----ADLILLLKEINSKKEISF 316
           GY  K+S    D+ G      +  +E +KR  L V++      D I++ + I   K   +
Sbjct: 80  GY-AKVSKAEKDSWGKTVEMYLTGREQLKRVVLLVDSRHKPTGDDIIMHEWI---KHFGY 135

Query: 317 PKNIDFIFIGTKSD 330
               D I + TKSD
Sbjct: 136 ----DVIVVATKSD 145


>gi|225870571|ref|YP_002746518.1| GTPase protein [Streptococcus equi subsp. equi 4047]
 gi|225699975|emb|CAW93947.1| putative GTPase protein [Streptococcus equi subsp. equi 4047]
          Length = 284

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A V + PG T+    +  + E   ++I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIATVGNKPGVTKGQQWLKSNKE---LEILDTPGI 176


>gi|171059543|ref|YP_001791892.1| GTP-binding proten HflX [Leptothrix cholodnii SP-6]
 gi|170776988|gb|ACB35127.1| GTP-binding proten HflX [Leptothrix cholodnii SP-6]
          Length = 412

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 217 RNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISD 273
           R+G +++ ++G++NAGKS+LFN L K   A   D    T D  T  + LE     V +SD
Sbjct: 197 RHGTFRVSLVGYTNAGKSTLFNVLVKAQ-AYAADQLFATLDTTTRQMYLEDARRSVSLSD 255

Query: 274 TAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           T G IR+    +  E  + T  E  ++DL+L
Sbjct: 256 TVGFIRDLPHSL-VEAFQATLQESADSDLLL 285


>gi|170744002|ref|YP_001772657.1| GTP-binding proten HflX [Methylobacterium sp. 4-46]
 gi|168198276|gb|ACA20223.1| GTP-binding proten HflX [Methylobacterium sp. 4-46]
          Length = 474

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 42/177 (23%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK----- 270
           R  Y IV L G++NAGKS+LFN L + +V           D+L   LD     +K     
Sbjct: 231 RVPYPIVALVGYTNAGKSTLFNRLTEAEV--------RAEDMLFATLDPTARAIKLPHGE 282

Query: 271 ---ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEI 314
              +SDT G       +     + T  +V  AD++L ++++  +              E+
Sbjct: 283 TAILSDTVGFISDLPTMLIAAFRATLEDVIEADILLHVRDMAHEDTQAQGEDVQAVLAEL 342

Query: 315 SFPKNIDFIF-IGTKSDL-----------YSTYTEEYDHLISSFTGEGLEELINKIK 359
                 D I  +  K+DL            S  T     LIS+ TGEG + L+ +I+
Sbjct: 343 GIAPQADRIIEVWNKADLLGPEERERLLNLSRQTGTRPVLISALTGEGTDALLARIE 399


>gi|145219336|ref|YP_001130045.1| ferrous iron transport protein B [Prosthecochloris vibrioformis DSM
           265]
 gi|145205500|gb|ABP36543.1| ferrous iron transport protein B [Chlorobium phaeovibrioides DSM
           265]
          Length = 795

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G+ N GK++LFNAL   +   V + PG T D  +     +    ++ D  GI    
Sbjct: 24  IAVVGNPNCGKTTLFNALTGLN-QTVGNWPGVTVDRKSGTFAFKSEAYELVDLPGIYSLS 82

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            I E E + R ++    A+LI+
Sbjct: 83  AISEDEAVARDYILGGEAELII 104


>gi|222823324|ref|YP_002574897.1| ferrous iron transport protein B [Campylobacter lari RM2100]
 gi|222538545|gb|ACM63646.1| ferrous iron transport protein B [Campylobacter lari RM2100]
          Length = 674

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS L NAL K ++  V +  G T +     L  + Y  K  D  G    D
Sbjct: 6   IALVGQPNVGKSLLINALCKANMK-VGNFSGVTVEKAEASLVYKNYEFKFIDLPGTYALD 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
              E+E I + FL+    DL++
Sbjct: 65  GYSEEEKITKDFLKKGEFDLVV 86


>gi|329736618|gb|EGG72884.1| GTP-binding protein HflX [Staphylococcus epidermidis VCU045]
          Length = 413

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++I ++G++NAGKSS FN LA     +K++   T  P T +    I ++ EG+ + ISDT
Sbjct: 206 FQIALVGYTNAGKSSWFNVLANEETYEKNILFATLDPKTRQ----IQVN-EGFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + AD+++
Sbjct: 261 VGFIQKLPTTLVAAFKSTLEEAKGADVLM 289


>gi|330834217|ref|YP_004408945.1| GTP-binding protein YlqF [Metallosphaera cuprina Ar-4]
 gi|329566356|gb|AEB94461.1| GTP-binding protein YlqF [Metallosphaera cuprina Ar-4]
          Length = 265

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 14/95 (14%)

Query: 203 ISSHISQG------KLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIP---G 252
           +SS + QG       + E++R    IV ++G+   GKSS+ NAL  + VA  + IP   G
Sbjct: 75  VSSRLHQGTKVLRDSIKELLRGNEGIVGVVGYPKTGKSSVINALKGRHVATTSSIPLSKG 134

Query: 253 TTRDVLTIDLDLEGYLVKISDTAG-IRETDDIVEK 286
            T+ +  I +D + Y +   DT G I  + D +EK
Sbjct: 135 FTKSIQLIKIDSKIYAI---DTPGVIPPSGDPLEK 166


>gi|329901090|ref|ZP_08272710.1| 50S ribosomal subunit maturation GTPase RbgA [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549240|gb|EGF33824.1| 50S ribosomal subunit maturation GTPase RbgA [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 301

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I+I+G  N GKS+L NAL KK VA V D P  T+  +   L L   +V ++DT G+
Sbjct: 109 RIMIMGIPNVGKSTLMNALLKKRVAKVGDEPAVTK--MQQRLYLGNNMV-LTDTPGM 162


>gi|309389198|gb|ADO77078.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
           praevalens DSM 2228]
          Length = 290

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI--VILGHSNAGKSSLF 236
           SE   + N  + E ++D+  + N+    I+  KL +  RN  ++  +I+G  N GKS+L 
Sbjct: 79  SEAAVLINSLTGEGVSDLKSVLNNTYDQIA-AKLAKKGRNPRRLRAMIIGIPNVGKSALI 137

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N LA   +  + D PG TR    +++   G  +++ DT GI
Sbjct: 138 NLLAGSKITTIGDKPGVTRGRQWVNV---GQKIRLLDTPGI 175


>gi|302385226|ref|YP_003821048.1| ferrous iron transport protein B [Clostridium saccharolyticum WM1]
 gi|302195854|gb|ADL03425.1| ferrous iron transport protein B [Clostridium saccharolyticum WM1]
          Length = 665

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N GK++LFNA     +  V + PG T + +  +   +G  +++ DT GI       
Sbjct: 13  VGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERVEGETSYKGRPIRVVDTPGIYSLTCYT 71

Query: 285 EKEGIKRTFLEVENADLIL 303
            +E + R  LE +  D+I+
Sbjct: 72  LEEIVTRKCLENDEVDVII 90


>gi|296333274|ref|ZP_06875727.1| GTP-binding protein YqeH [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675222|ref|YP_003866894.1| ribosome 30S assembly GTPase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296149472|gb|EFG90368.1| GTP-binding protein YqeH [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413466|gb|ADM38585.1| GTPase involved in ribosome 30S assembly [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 366

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  RNG  + ++G +N GKS+  N + K     +D+   +  PGTT D + I LD    L
Sbjct: 154 EHYRNGKDVYVVGCTNVGKSTFINRVIKEVSGEEDIITTSQFPGTTLDAIEIPLDDGSAL 213

Query: 269 VKISDTAGI 277
               DT GI
Sbjct: 214 Y---DTPGI 219


>gi|284049406|ref|YP_003399745.1| GTP-binding protein HSR1-related protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283953627|gb|ADB48430.1| GTP-binding protein HSR1-related protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 352

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID------LDLEGY 267
           KI + G   AGKSSL N LA + VA V+    TTR+   ++      +DL GY
Sbjct: 25  KICLFGQPGAGKSSLINELAGQRVARVSQATDTTREAQIVECPDVIYVDLPGY 77


>gi|282876262|ref|ZP_06285129.1| GTP-binding protein HflX [Staphylococcus epidermidis SK135]
 gi|281295287|gb|EFA87814.1| GTP-binding protein HflX [Staphylococcus epidermidis SK135]
 gi|329736194|gb|EGG72466.1| GTP-binding protein HflX [Staphylococcus epidermidis VCU028]
          Length = 413

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++I ++G++NAGKSS FN LA     +K++   T  P T +    I ++ EG+ + ISDT
Sbjct: 206 FQIALVGYTNAGKSSWFNVLANEETYEKNILFATLDPKTRQ----IQVN-EGFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + AD+++
Sbjct: 261 VGFIQKLPTTLVAAFKSTLEEAKGADVLM 289


>gi|225868571|ref|YP_002744519.1| GTPase protein [Streptococcus equi subsp. zooepidemicus]
 gi|225701847|emb|CAW99305.1| putative GTPase protein [Streptococcus equi subsp. zooepidemicus]
          Length = 284

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A V + PG T+    +  + E   ++I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIATVGNKPGVTKGQQWLKSNKE---LEILDTPGI 176


>gi|315231657|ref|YP_004072093.1| 50S ribosomal subunit maturation GTPase [Thermococcus barophilus
           MP]
 gi|315184685|gb|ADT84870.1| 50S ribosomal subunit maturation GTPase [Thermococcus barophilus
           MP]
          Length = 344

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GKS++ N L  K    V  IPG T+    I L  + +L+       I + 
Sbjct: 96  KVALIGYPNVGKSTIINVLKGKHAVGVAPIPGYTKGKQLIRLSKKIWLIDSPGVVPIDDF 155

Query: 281 DDIVEKEGIKRTFLE--VENADLILLLKEINSKKE 313
           D++V K G     +E  V+ A L L+ + I+++KE
Sbjct: 156 DELVIKGGFPADKIEDPVKPA-LKLIRRIIDTRKE 189


>gi|195978101|ref|YP_002123345.1| ribosomal biogenesis GTPase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974806|gb|ACG62332.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 284

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS+L N LA K +A V + PG T+    +  + E   ++I DT GI
Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIATVGNKPGVTKGQQWLKSNKE---LEILDTPGI 176


>gi|189468339|ref|ZP_03017124.1| hypothetical protein BACINT_04736 [Bacteroides intestinalis DSM
           17393]
 gi|189436603|gb|EDV05588.1| hypothetical protein BACINT_04736 [Bacteroides intestinalis DSM
           17393]
          Length = 297

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 10/76 (13%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP---GTTRDVLT----IDLD 263
           +L E I  G  +V +G S  GKSSL NAL  + V + +DI    G  R   T    + +D
Sbjct: 131 QLQESISAGETVVFVGSSGVGKSSLVNALCGESVLLTSDISLSTGKGRHTSTRREMVLMD 190

Query: 264 LEGYLVKISDTAGIRE 279
             G L+   DT G+RE
Sbjct: 191 GSGVLI---DTPGVRE 203


>gi|125524978|gb|EAY73092.1| hypothetical protein OsI_00968 [Oryza sativa Indica Group]
          Length = 627

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 30/59 (50%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ I+G  N GKS+L N L ++   +V    G TRD +      +   V + DTAG  E
Sbjct: 201 QLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTRDSIRTQFQFDNRTVYLVDTAGWME 259


>gi|123432401|ref|XP_001308413.1| small GTP-binding protein [Trichomonas vaginalis G3]
 gi|121890092|gb|EAX95483.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
          Length = 194

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 38/171 (22%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP-GTTRDVLTIDLDLEGYLVKISDTAGIR 278
           +K+V+LG S  GK+SL ++   K+  +  +   G   + + + +D +   +++ DTAG  
Sbjct: 11  HKVVLLGDSRVGKTSLLSSQMHKEKHLSQNPTIGCQCNDVEMFVDNQKVSIQVWDTAG-- 68

Query: 279 ETDDIVEKEGIKRTFLEV--ENADLILLLKEINSKKEIS------------FPKNIDFIF 324
                   + I R  + +   +A   +++ +I   K               FP+N    F
Sbjct: 69  --------QEIYRALVPIYLRDAHAAIIVYDITDMKSFKALPEWMNTLFGIFPQNSPLFF 120

Query: 325 IGTKSDLYST-YTEEYD------------HLISSFTGEGLEELINKIKSIL 362
           +  K DL  T   E+ D            H  S+ +GEG+EEL   +   L
Sbjct: 121 VANKIDLEETRQVEDADGEEFARKNGGQFHRTSALSGEGIEELFKAVAKAL 171


>gi|26250970|ref|NP_757010.1| hypothetical protein c5162 [Escherichia coli CFT073]
 gi|117625235|ref|YP_854318.1| hypothetical protein APECO1_3493 [Escherichia coli APEC O1]
 gi|218560002|ref|YP_002392915.1| GTP-binding protein [Escherichia coli S88]
 gi|237706327|ref|ZP_04536808.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|18265922|gb|AAL67395.1|AF447814_63 unknown [Escherichia coli]
 gi|26111402|gb|AAN83584.1|AE016771_95 Putative conserved protein [Escherichia coli CFT073]
 gi|70608380|gb|AAZ04452.1| conserved hypothetical protein [Escherichia coli]
 gi|115514359|gb|ABJ02434.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218366771|emb|CAR04538.1| putative GTP-binding protein [Escherichia coli S88]
 gi|226899367|gb|EEH85626.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|323951553|gb|EGB47428.1| hypothetical protein ERKG_02196 [Escherichia coli H252]
          Length = 294

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHSVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            + G TR    + L L    + + D  GI ET  
Sbjct: 68  PLNGCTRQAHRLTLQLGERRMTLVDLPGIGETPQ 101


>gi|27467902|ref|NP_764539.1| GTP-binding protein proteinase modulator YnbA [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866834|ref|YP_188455.1| GTP-binding protein [Staphylococcus epidermidis RP62A]
 gi|251810737|ref|ZP_04825210.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|27315447|gb|AAO04581.1|AE016747_78 GTP-binding protein proteinase modulator YnbA [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637492|gb|AAW54280.1| GTP-binding protein, putative [Staphylococcus epidermidis RP62A]
 gi|251805897|gb|EES58554.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
          Length = 416

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++I ++G++NAGKSS FN LA     +K++   T  P T +    I ++ EG+ + ISDT
Sbjct: 209 FQIALVGYTNAGKSSWFNVLANEETYEKNILFATLDPKTRQ----IQVN-EGFNLIISDT 263

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + AD+++
Sbjct: 264 VGFIQKLPTTLVAAFKSTLEEAKGADVLM 292


>gi|119773234|ref|YP_925974.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella
           amazonensis SB2B]
 gi|166225978|sp|A1S1P8|ENGB_SHEAM RecName: Full=Probable GTP-binding protein EngB
 gi|119765734|gb|ABL98304.1| cell division checkpoint GTPase YihA [Shewanella amazonensis SB2B]
          Length = 217

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLD 263
           +H+ +   G++   G +I   G SNAGKSS  NAL  +K +A  +  PG T+ +   +LD
Sbjct: 21  AHLDKHLPGDV---GVEIAFAGRSNAGKSSALNALTEQKSLARTSKTPGRTQLINVFELD 77

Query: 264 LEGYLVKI 271
            +  LV +
Sbjct: 78  AQRRLVDL 85


>gi|67591024|ref|XP_665523.1| GTPase [Cryptosporidium hominis TU502]
 gi|54656252|gb|EAL35292.1| GTPase [Cryptosporidium hominis]
          Length = 413

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G+ N GKSSL N+L +     V  + G TR +  IDLD      K+ D+ G+  T 
Sbjct: 224 IGVMGYPNVGKSSLINSLKRGYCVKVGAVAGVTRHLQRIDLD---STTKLIDSPGVVFTG 280

Query: 282 DIVEKEGIKRTFLEVENAD-----LILLLKEIN 309
           +  +   + R  +++ N       + LLL++I+
Sbjct: 281 NSQDPSQVLRNTVQLTNVKDCFEPISLLLQKID 313


>gi|331679011|ref|ZP_08379683.1| conserved hypothetical protein [Escherichia coli H591]
 gi|331073076|gb|EGI44399.1| conserved hypothetical protein [Escherichia coli H591]
          Length = 294

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHSVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            + G TR    + L L    + + D  GI ET  
Sbjct: 68  PLNGCTRQAHRLTLQLGERRMTLVDLPGIGETPQ 101


>gi|302754754|ref|XP_002960801.1| hypothetical protein SELMODRAFT_75698 [Selaginella moellendorffii]
 gi|300171740|gb|EFJ38340.1| hypothetical protein SELMODRAFT_75698 [Selaginella moellendorffii]
          Length = 330

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 10/97 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++GY + ++G  N GKS+L N +  + ++IVT  P TTR  +        Y + + DT G
Sbjct: 28  QSGY-VALIGKPNVGKSTLLNGIIGQKLSIVTAKPQTTRHRILGICSGPNYQMILYDTPG 86

Query: 277 I-----RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           +      + D+++ K     T     N+D +LL+ +I
Sbjct: 87  VITKQMHKLDELMMKSVRSATI----NSDCLLLIADI 119


>gi|253568037|ref|ZP_04845448.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842110|gb|EES70190.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 355

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 10/76 (13%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP---GTTRDVLT----IDLD 263
           +L E I  G  +V +G S  GKSSL NAL  K V   +DI    G  R   T    + +D
Sbjct: 189 RLRESITKGETVVFVGSSGVGKSSLVNALCGKSVLNTSDISLSTGKGRHTSTRREMVLMD 248

Query: 264 LEGYLVKISDTAGIRE 279
             G L+   DT G+RE
Sbjct: 249 GSGVLI---DTPGVRE 261


>gi|227547539|ref|ZP_03977588.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239621149|ref|ZP_04664180.1| GTP-binding protein [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|227211949|gb|EEI79845.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239515610|gb|EEQ55477.1| GTP-binding protein [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 501

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 28/165 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G++NAGKSSL N L         A+   +    R   T D     Y+    DT G 
Sbjct: 283 VAVVGYTNAGKSSLTNRLTGSAELVGNALFATLDTAVRRAKTRDGRAYAYV----DTVGF 338

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL------------LLKEINSK-KEISFPKNIDFIF 324
                    E  K T  EV  AD+IL             +  +N    +I    +I  I 
Sbjct: 339 VRRLPTQLVEAFKSTLEEVAEADVILHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRIL 398

Query: 325 IGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSIL 362
           +  K+D     T E          ++S++TGEGL+EL   ++S+L
Sbjct: 399 VFNKADQADEATRERLAALQPDAFIVSAYTGEGLDELRTAVESLL 443


>gi|153854550|ref|ZP_01995820.1| hypothetical protein DORLON_01815 [Dorea longicatena DSM 13814]
 gi|149752859|gb|EDM62790.1| hypothetical protein DORLON_01815 [Dorea longicatena DSM 13814]
          Length = 196

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIR 278
           I   G SN GKSSL NAL  +K  A ++  PG T+ +   +++ E YLV +     A + 
Sbjct: 26  IAFAGKSNVGKSSLINALMNRKSYARISATPGKTQTINFYNINEELYLVDLPGYGYAKVS 85

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           E + I   + I+R     +   ++ LL +I  K
Sbjct: 86  EQEKIKWGQLIERYLHGSKQLKVVFLLIDIRHK 118


>gi|148377355|ref|YP_001256231.1| ribosomal biogenesis GTPase [Mycoplasma agalactiae PG2]
 gi|148291401|emb|CAL58785.1| GTP binding protein [Mycoplasma agalactiae PG2]
          Length = 286

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D++N  SK ++  I  LK   +  +++ K   +I +  K  ++G  NAGKS+L N L+ K
Sbjct: 92  DLRNPKSKNII--INKLKKITADKVAKDKAKGLINSRIKAFVMGIPNAGKSTLINLLSSK 149

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
               V + PG TR    + +D   ++    DT GI
Sbjct: 150 KSLQVANYPGVTRAKKWVVVDNFFFM----DTPGI 180


>gi|145298620|ref|YP_001141461.1| ferrous iron transport protein B [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851392|gb|ABO89713.1| ferrous iron transport protein B [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 747

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 13/91 (14%)

Query: 220 YKIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           Y +V +G+ N+GK+SLFNAL  A++ V    +  G T D    +   +G+  K+ D  GI
Sbjct: 3   YSLVTVGNPNSGKTSLFNALTGARQQVG---NWSGVTVDKKMGEFSAQGHDYKLMDLPGI 59

Query: 278 RETDDIVEKEG-----IKRTFLEVENADLIL 303
                +  +EG     I   F++ +  DL+L
Sbjct: 60  Y---SLANQEGSLDEQIASRFVQGQQPDLLL 87


>gi|85057291|ref|YP_456207.1| GTPase EngB [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789396|gb|ABC65128.1| GTP-binding protein [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 196

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           IV++G SN GKS+  NAL  KK +A ++  PG T  +   D++   YL+   DT G
Sbjct: 25  IVLVGRSNVGKSTFINALTQKKKLAKISKTPGKTITLNYYDINESFYLI---DTPG 77


>gi|327271876|ref|XP_003220713.1| PREDICTED: GTP-binding protein 5-like [Anolis carolinensis]
          Length = 504

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 36/229 (15%)

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKND--ISSHISQGKLGEI------IRNGYKIV 223
           I ADL+   EE V  +       +  FL ND    +  ++G+ GE       ++      
Sbjct: 267 IVADLNQHGEEYVAVYGGTGGKGNRFFLANDNRAPTMATEGEPGEERVLNLELKTMAHAG 326

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDD 282
           ++G  NAGKSSL  A++    A+ +  P TT +     +  EGY  V ++D  GI     
Sbjct: 327 MVGFPNAGKSSLLRAISNAKPAVAS-YPFTTLNPHVGIVHYEGYEQVSVADVPGI--IKG 383

Query: 283 IVEKEGIKRTFLE-VENADLILLLKEINSKKEISFPKNIDF--------------IFIGT 327
             +  G+   FL+ +E    +L + +++  +  +  +++ +                IG 
Sbjct: 384 AHQNRGLGLAFLKHIERCRFLLYVLDLSVPEPWTQLRDLKYELEQYEEGLSKRPHAIIGN 443

Query: 328 KSDLYSTYT------EEYDHLI---SSFTGEGLEELINKIKSILSNKFK 367
           K DL    +      E+ +  +   S+ TG+ LEEL+  +K +  +  K
Sbjct: 444 KLDLPQAKSNLPLLKEQVEQRVIPLSALTGDNLEELLLHLKDLYDHYVK 492


>gi|319952376|ref|YP_004163643.1| gtp-binding protein era-like-protein [Cellulophaga algicola DSM
           14237]
 gi|319421036|gb|ADV48145.1| GTP-binding protein Era-like-protein [Cellulophaga algicola DSM
           14237]
          Length = 295

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 48/88 (54%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ + + + +SDT GI +    
Sbjct: 11  IIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGDDFQMILSDTPGIIKPAYE 70

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311
           ++   +       E+AD+++ + EI  K
Sbjct: 71  LQSSMMDFVKSAFEDADILIYMVEIGEK 98


>gi|307297295|ref|ZP_07577101.1| GTP-binding protein HSR1-related protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916555|gb|EFN46937.1| GTP-binding protein HSR1-related protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 368

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 11/104 (10%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           V +G +N GKSS+ N L + +   V+  PGTT  V +  +   G    + DT GI   D 
Sbjct: 159 VSVGVTNVGKSSILNGLIQSEELTVSRFPGTTVKVASKKVG--GSAFTVYDTPGIFTKDR 216

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
           I +        L VE+    L  K++N K  I F  ++  +F+G
Sbjct: 217 ITD-------LLSVEDQSRFLPRKKLN-KSTIQF-HDVRTVFLG 251


>gi|304373098|ref|YP_003856307.1| GTPase EngB [Mycoplasma hyorhinis HUB-1]
 gi|304309289|gb|ADM21769.1| GTPase EngB [Mycoplasma hyorhinis HUB-1]
          Length = 184

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-------LTIDLDLEGY-LVKIS 272
           I ++G SN GKSSL NALA + +A  +  PG T+ +         + +DL GY   KIS
Sbjct: 22  ICLIGRSNVGKSSLINALANQKIAKTSKQPGRTQLINFFYNQQKQVIVDLPGYGFAKIS 80


>gi|291320025|ref|YP_003515283.1| GTP binding protein [Mycoplasma agalactiae]
 gi|290752354|emb|CBH40325.1| GTP binding protein [Mycoplasma agalactiae]
          Length = 286

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D++N  SK ++  I  LK   +  +++ K   +I +  K  ++G  NAGKS+L N L+ K
Sbjct: 92  DLRNPKSKNII--INKLKKITADKVAKDKAKGLINSRIKAFVMGIPNAGKSTLINLLSSK 149

Query: 243 DVAIVTDIPGTTR 255
               V + PG TR
Sbjct: 150 KSLQVANYPGVTR 162


>gi|253746061|gb|EET01577.1| Nucleolar GTPase [Giardia intestinalis ATCC 50581]
          Length = 541

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R      ++G  N GKSS+ N+L+ ++   V  IPG T+ +  I +DL    ++I D+ 
Sbjct: 277 MRTKIVAAVVGIPNVGKSSIINSLSSRNAVGVAPIPGYTKKISEIHIDLR---LRILDSP 333

Query: 276 GI 277
           G+
Sbjct: 334 GV 335


>gi|254507481|ref|ZP_05119615.1| GTP-binding protein Era [Vibrio parahaemolyticus 16]
 gi|219549551|gb|EED26542.1| GTP-binding protein Era [Vibrio parahaemolyticus 16]
          Length = 325

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N +  + ++I +  P TTR  + + +D EG Y     DT G+   
Sbjct: 34  VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRI-MGVDTEGDYQAIYVDTPGLH-- 90

Query: 281 DDIVEKEGIKRTFLEVENADL 301
             I EK  I R      N+ L
Sbjct: 91  --IEEKRAINRLMNRAANSSL 109


>gi|255263213|ref|ZP_05342555.1| GTP-binding protein Era [Thalassiobium sp. R2A62]
 gi|255105548|gb|EET48222.1| GTP-binding protein Era [Thalassiobium sp. R2A62]
          Length = 307

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 30/182 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +  + ++ +  LV + DT 
Sbjct: 9   RAGF-IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGQSQLVFV-DTP 66

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL------------------LKEINSKKEISFP 317
           G+ +    +++  +   +    +AD+++L                  L+E      ++  
Sbjct: 67  GLFKPRRRLDRAMVAAAWSGASDADVVVLMIESHRGITEGVEAILEALEERGGNAPVALA 126

Query: 318 KN-IDF----IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            N ID     + +G   ++   +      +IS+  G G    ++ +++ L+ +  K PF 
Sbjct: 127 LNKIDRVKSEVLLGLTKEMNDRFDFAETFMISAEKGHG----VDTLRTWLAGRIPKSPFL 182

Query: 373 IP 374
            P
Sbjct: 183 YP 184


>gi|238854658|ref|ZP_04644988.1| GTP-binding protein Era [Lactobacillus jensenii 269-3]
 gi|260664399|ref|ZP_05865251.1| GTP-binding protein Era [Lactobacillus jensenii SJ-7A-US]
 gi|282932951|ref|ZP_06338348.1| GTP-binding protein Era [Lactobacillus jensenii 208-1]
 gi|313472197|ref|ZP_07812689.1| GTP-binding protein Era [Lactobacillus jensenii 1153]
 gi|238832448|gb|EEQ24755.1| GTP-binding protein Era [Lactobacillus jensenii 269-3]
 gi|239529577|gb|EEQ68578.1| GTP-binding protein Era [Lactobacillus jensenii 1153]
 gi|260561464|gb|EEX27436.1| GTP-binding protein Era [Lactobacillus jensenii SJ-7A-US]
 gi|281302986|gb|EFA95191.1| GTP-binding protein Era [Lactobacillus jensenii 208-1]
          Length = 302

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 8/90 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+L N L  + V I ++ P TTR+    + T D +L+   V   DT GI
Sbjct: 12  VALIGRPNVGKSTLMNHLIGQKVVITSNKPQTTRNKISGIFTTD-NLQAVFV---DTPGI 67

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKE 307
            +  + ++    K +   + + DL+  + E
Sbjct: 68  HKPKNKLDDYMDKASLSSLNDVDLVFFMVE 97


>gi|242309000|ref|ZP_04808155.1| ferrous iron transport protein B [Helicobacter pullorum MIT
           98-5489]
 gi|239524424|gb|EEQ64290.1| ferrous iron transport protein B [Helicobacter pullorum MIT
           98-5489]
          Length = 703

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS L NAL   ++  V +  G T +        +GY  +I D  G    
Sbjct: 6   KIALVGQPNVGKSLLVNALCHSNMK-VGNFTGVTIEKAQAKTIYKGYEFQIIDLPGTYSL 64

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
               E+E I + F+E +  D+I+
Sbjct: 65  YGYSEEEKITKNFIESDEYDIII 87


>gi|213403738|ref|XP_002172641.1| nucleolar GTP-binding protein [Schizosaccharomyces japonicus
           yFS275]
 gi|212000688|gb|EEB06348.1| nucleolar GTP-binding protein [Schizosaccharomyces japonicus
           yFS275]
          Length = 530

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           ++G+ NAGKSS+ N L KK V  V  IPG T+
Sbjct: 325 LIGYPNAGKSSVINTLRKKKVCTVAPIPGETK 356


>gi|116070707|ref|ZP_01467976.1| hypothetical protein BL107_13715 [Synechococcus sp. BL107]
 gi|116066112|gb|EAU71869.1| hypothetical protein BL107_13715 [Synechococcus sp. BL107]
          Length = 529

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 26/217 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKI 271
           E+ R    +V+ G  ++GK+SL  AL +K V  V    G T++  +  L L+G    +++
Sbjct: 125 ELQRGDLVVVVFGTGSSGKTSLIRALLQKMVGDVGAPMGLTKETRSYRLRLKGLSRGLQL 184

Query: 272 SDTAGIRET-DDIVEKEGIKRTFLEVENADLILLLKEINSK-KEISFPKNI-----DFIF 324
            DT GI E  DD + +E   R       ADL+L++ + + +  E++  ++I       + 
Sbjct: 185 VDTPGILEAGDDGLSREDQARR--RAIRADLLLVVVDGDLRASELAVVRSIADLGKRLLL 242

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN----KFKKLPFSIPSH-KRH 379
           +  K DL     E+          + L+ L ++   +LSN         P SIP   +R 
Sbjct: 243 VLNKRDLRGVDEEK----------QLLQVLRSRCTGLLSNADVLACSAAPQSIPQPGRRP 292

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           L      +  L+  ++  +  G ++IA+N+ L   +L
Sbjct: 293 LQPKPDVMDLLQRLAVVLQAEGEELIADNILLQCRNL 329


>gi|116181464|ref|XP_001220581.1| hypothetical protein CHGG_01360 [Chaetomium globosum CBS 148.51]
 gi|88185657|gb|EAQ93125.1| hypothetical protein CHGG_01360 [Chaetomium globosum CBS 148.51]
          Length = 590

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GKSS+ NAL  K VA V  IPG T+    + L    YL+   D  G
Sbjct: 290 RKQISVGLIGYPNVGKSSIINALRGKAVAKVAPIPGETKVWQYVTLMKRIYLI---DCPG 346

Query: 277 I 277
           I
Sbjct: 347 I 347


>gi|293610817|ref|ZP_06693117.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827161|gb|EFF85526.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123612|gb|ADY83135.1| GTP-binding protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 258

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL--------DLEGY 267
           +GY+I   G SNAGKSS  NAL  KK +A  +  PG T+ +    L        DL GY
Sbjct: 60  SGYEIAFAGRSNAGKSSAINALTNKKQLARASKKPGRTQMINFFSLGNPDQRLVDLPGY 118


>gi|290968506|ref|ZP_06560045.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781502|gb|EFD94091.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 287

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS+L N LA ++VA   D PG T+    + L   G  + + DT G+
Sbjct: 122 RTMILGIPNVGKSTLINRLAGRNVAKTADKPGETKGKQWVHL---GEYLDLLDTPGV 175


>gi|288958341|ref|YP_003448682.1| GTP-binding protein [Azospirillum sp. B510]
 gi|288910649|dbj|BAI72138.1| GTP-binding protein [Azospirillum sp. B510]
          Length = 426

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 7/93 (7%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y +V L G++NAGKS+LFN LA  DV    D+   T D     + L  G  V +SDT G 
Sbjct: 192 YPVVALVGYTNAGKSTLFNRLANADV-FAQDLLFATLDPTMRQVTLPSGRKVILSDTVGF 250

Query: 278 RETDDIVEK--EGIKRTFLEVENADLILLLKEI 308
               D+        + T  EV+ AD+IL +++I
Sbjct: 251 --ISDLPHGLVAAFRATLEEVDAADIILHVRDI 281


>gi|254839192|pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
           Methanococcus Jannaschii
 gi|254839193|pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
           Methanococcus Jannaschii
          Length = 165

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS++FNAL  ++V I  + PG T +    + +  G   K+ D  G+  
Sbjct: 4   YEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E I R ++  E  DL++
Sbjct: 63  LTANSIDEIIARDYIINEKPDLVV 86


>gi|124023647|ref|YP_001017954.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9303]
 gi|123963933|gb|ABM78689.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9303]
          Length = 343

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L E  R+G+ + ++G  N GKS+L N L  + VAI + +  TTR+ L   +      + +
Sbjct: 36  LPEGYRSGF-VALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAIVTTPEAQMVL 94

Query: 272 SDTAGIRETDDIV 284
            DT GI +   ++
Sbjct: 95  VDTPGIHKPHHLL 107


>gi|126179727|ref|YP_001047692.1| GTP-binding protein, HSR1-related [Methanoculleus marisnigri JR1]
 gi|125862521|gb|ABN57710.1| GTP-binding protein, HSR1-related protein [Methanoculleus
           marisnigri JR1]
          Length = 616

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G+ + GKS +FN L    V  V++ PGTT ++   +   +  + ++ D  G+   
Sbjct: 2   RFALIGNPSVGKSLIFNQLTGLGVE-VSNYPGTTVELQRGNTCFQREIFELVDLPGVYSL 60

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +   ++EG+ R FLE ++ D ++++  + 
Sbjct: 61  EGNSDEEGLVRRFLEQQDVDAVIVVANVT 89


>gi|54025798|ref|YP_120040.1| putative GTP-binding protein [Nocardia farcinica IFM 10152]
 gi|54017306|dbj|BAD58676.1| putative GTP-binding protein [Nocardia farcinica IFM 10152]
          Length = 548

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           ++ I+G++NAGKSSL NAL    V +V D    T D  T   +L +G  V  +DT G   
Sbjct: 314 QVAIVGYTNAGKSSLMNALTGSGV-LVQDALFATLDPTTRRAELDDGREVVFTDTVGFVR 372

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E  + T  EV  ADL+L
Sbjct: 373 HLPTQLVEAFRSTLEEVTGADLLL 396


>gi|330723278|gb|AEC45648.1| GTPase EngB [Mycoplasma hyorhinis MCLD]
          Length = 184

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-------LTIDLDLEGY-LVKIS 272
           I ++G SN GKSSL NALA + +A  +  PG T+ +         + +DL GY   KIS
Sbjct: 22  ICLIGRSNVGKSSLINALANQKIAKTSKQPGRTQLINFFYNQQKQVIVDLPGYGFAKIS 80


>gi|238917282|ref|YP_002930799.1| GTP-binding protein Era [Eubacterium eligens ATCC 27750]
 gi|238872642|gb|ACR72352.1| GTP-binding protein Era [Eubacterium eligens ATCC 27750]
          Length = 322

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 5/107 (4%)

Query: 204 SSHISQGKLGEIIRN--GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTI 260
           +S I+ G   E  R   G+ +  +G  N GKS+L N +  + +AI ++ P TTR+ + T+
Sbjct: 9   ASGITGGAKAENTRTKTGF-VTFIGRPNVGKSTLMNQIIGQKIAITSNKPQTTRNRIQTV 67

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
             D  G +V + DT GI +  + + +  +      +   DLI  L E
Sbjct: 68  YTDERGQIVFV-DTPGIHKAKNKLGEYMVGAAEKTISEVDLICWLVE 113


>gi|70733170|ref|YP_262943.1| hypothetical protein PFL_5885 [Pseudomonas fluorescens Pf-5]
 gi|68347469|gb|AAY95075.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 459

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L  +DV    V+  P TTR V    L ++G  L+++ DT G+
Sbjct: 10  KLAVVGHTNVGKTSLLRTLT-RDVGFGEVSHRPSTTRHVEGARLSVDGQALLELYDTPGL 68


>gi|332671170|ref|YP_004454178.1| GTPase EngC [Cellulomonas fimi ATCC 484]
 gi|332340208|gb|AEE46791.1| GTPase EngC [Cellulomonas fimi ATCC 484]
          Length = 360

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 7/68 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNAL---AKKDVAIVTDIPGTTRDVLTIDLDL----EGYLVK 270
           +G   V++GHS  GKS+L NAL   A +   +V D+ G  R   T  + L    EG    
Sbjct: 206 DGRTSVLVGHSGVGKSTLVNALVPHAARATGVVNDVTGRGRHTSTSAVALRVPGEGAPTW 265

Query: 271 ISDTAGIR 278
           + DT G+R
Sbjct: 266 VIDTPGVR 273


>gi|255526646|ref|ZP_05393552.1| ferrous iron transport protein B [Clostridium carboxidivorans P7]
 gi|296186105|ref|ZP_06854510.1| ferrous iron transport protein B [Clostridium carboxidivorans P7]
 gi|255509679|gb|EET86013.1| ferrous iron transport protein B [Clostridium carboxidivorans P7]
 gi|296049373|gb|EFG88802.1| ferrous iron transport protein B [Clostridium carboxidivorans P7]
          Length = 587

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 10/83 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIRET 280
           +LG+ N GK+SLFN L   +   V +  G T +        EG+L   +KI D  GI   
Sbjct: 6   LLGNPNVGKTSLFNILTGSN-QYVGNWAGVTVE------KKEGFLDNSLKIVDLPGIYAM 58

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D    +E + R FL   +AD+I+
Sbjct: 59  DTFSNEEKVSREFLLNGDADVII 81


>gi|205373354|ref|ZP_03226158.1| hypothetical protein Bcoam_08560 [Bacillus coahuilensis m4-4]
          Length = 285

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIIGIPNVGKSTLINRLAKKNIAKTGNTPGVTKAQQWIKV---GKELELLDTPGI 175


>gi|297203307|ref|ZP_06920704.1| ribosome small subunit-dependent GTPase A [Streptomyces sviceus
           ATCC 29083]
 gi|197711394|gb|EDY55428.1| ribosome small subunit-dependent GTPase A [Streptomyces sviceus
           ATCC 29083]
          Length = 366

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT---DIPGTTRDVLTID--LDLEGYLVK 270
           + +G   V+LG S AGKS+L NAL  +D+  V    D  G  R   T    L L G  V 
Sbjct: 198 VASGGTTVLLGQSGAGKSTLANALIGEDMMAVQATRDADGKGRHTTTTRNLLALPGGGVL 257

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVE 297
           I DT G+R       + G+ + F E+E
Sbjct: 258 I-DTPGLRGVGLWDAETGVAQVFAEIE 283


>gi|224531545|ref|ZP_03672177.1| GTP-binding protein Era [Borrelia valaisiana VS116]
 gi|224511010|gb|EEF81416.1| GTP-binding protein Era [Borrelia valaisiana VS116]
          Length = 290

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGI---R 278
            ILG  + GKS+L N++    ++I++ IP TTR ++  I  D  G ++ I DT G    +
Sbjct: 7   AILGRPSTGKSTLLNSICGHKISIISPIPQTTRNNIKGIFTDGRGQIIFI-DTPGFHLSK 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKN--IDFIFIGTKSD 330
           +  +I   + I  +  EVE   LIL + +I  K      K +   KN  I F+ +  K D
Sbjct: 66  KKFNIAMMKNIHSSIGEVE---LILYIIDIQDKPGEEENKMLEIIKNSKIKFLVLLNKVD 122

Query: 331 LYSTYTEEY----------DHLISSFTGE---GLEELINKIKSILSNKFKKLPFSIPSHK 377
           L +T  +E           D+ I   + E     EEL NKI    S      P    + +
Sbjct: 123 LKNTKIKEITQFLKEKEIEDNNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYYTDQ 182

Query: 378 RHLYHLSQTVRYLEMASLNE 397
           +  + +S+ +R   + +L E
Sbjct: 183 KINFRISEIIREKAIENLKE 202


>gi|123968478|ref|YP_001009336.1| GTPase SAR1 [Prochlorococcus marinus str. AS9601]
 gi|123198588|gb|ABM70229.1| GTPase SAR1 [Prochlorococcus marinus str. AS9601]
          Length = 499

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 21/133 (15%)

Query: 182 EDVQNFSSK-------EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           E V+N + K       E+LN   + KN + S +  G         YK+ + G  ++GK+S
Sbjct: 82  EGVENINKKINDKVKVELLN---YQKNKLESQLKTG--------DYKVTLFGAGSSGKTS 130

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           +  +L K  V   +   GTT+ + +  I + +    + I DT G+ E   + E E  K T
Sbjct: 131 IARSLLKNIVGQTSAKIGTTKHIKSYKIRIPILKRNINIVDTPGLFEPSKLGE-EREKAT 189

Query: 293 FLEVENADLILLL 305
            L+  N+DL+L +
Sbjct: 190 ILQASNSDLVLFV 202


>gi|121700180|ref|XP_001268355.1| GTP binding protein (EngB), putative [Aspergillus clavatus NRRL 1]
 gi|119396497|gb|EAW06929.1| GTP binding protein (EngB), putative [Aspergillus clavatus NRRL 1]
          Length = 321

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-------------IDLDLEGY 267
           ++  LG SN GKSSL NA+  K++   +  PG TR++               + LD+ GY
Sbjct: 98  EVAFLGRSNVGKSSLLNAIMGKEICWTSSKPGRTREMNAFGIGGTKGGESKIVLLDMPGY 157

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
                   GI     +  +  ++R F+ +++
Sbjct: 158 GKASRAEWGIEILKYLQGRRQLRRAFVLIDS 188


>gi|77735567|ref|NP_001029479.1| guanine nucleotide-binding protein-like 3-like protein [Bos taurus]
 gi|122145091|sp|Q3T0J9|GNL3L_BOVIN RecName: Full=Guanine nucleotide-binding protein-like 3-like
           protein
 gi|74354000|gb|AAI02364.1| Guanine nucleotide binding protein-like 3 (nucleolar)-like [Bos
           taurus]
 gi|296470683|gb|DAA12798.1| guanine nucleotide-binding protein-like 3-like protein [Bos taurus]
          Length = 575

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 238 RLGEV-RTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVYLD---KFIR 293

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 294 LLDAPGI 300


>gi|21230731|ref|NP_636648.1| GTP-binding protein Era [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769273|ref|YP_244035.1| GTP-binding protein Era [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188992424|ref|YP_001904434.1| GTP-binding protein Era [Xanthomonas campestris pv. campestris str.
           B100]
 gi|25008429|sp|Q8PB51|ERA_XANCP RecName: Full=GTPase Era
 gi|81304768|sp|Q4USF8|ERA_XANC8 RecName: Full=GTPase Era
 gi|226741404|sp|B0RX26|ERA_XANCB RecName: Full=GTPase Era
 gi|21112324|gb|AAM40572.1| GTP binding protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574605|gb|AAY50015.1| GTP binding protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167734184|emb|CAP52392.1| GTP-binding protein [Xanthomonas campestris pv. campestris]
          Length = 298

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+L NAL    V+IV++ P TTR  +L I    EG L+ + DT G+
Sbjct: 12  VAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLMLV-DTPGL 67


>gi|330828483|ref|YP_004391435.1| GTP-binding protein era [Aeromonas veronii B565]
 gi|328803619|gb|AEB48818.1| GTP-binding protein era [Aeromonas veronii B565]
          Length = 299

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +L ID + + Y     DT G+   
Sbjct: 10  VAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRILGIDTE-DNYQTIYVDTPGLH-- 66

Query: 281 DDIVEKEGIKR 291
             I EK  I R
Sbjct: 67  --IEEKRAINR 75


>gi|324993989|gb|EGC25908.1| GTP-binding protein HflX [Streptococcus sanguinis SK405]
 gi|325695996|gb|EGD37887.1| GTP-binding protein HflX [Streptococcus sanguinis SK160]
 gi|327474854|gb|EGF20259.1| GTP-binding protein HflX [Streptococcus sanguinis SK408]
 gi|327489979|gb|EGF21768.1| GTP-binding protein HflX [Streptococcus sanguinis SK1058]
          Length = 412

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  KD     ++  T  D  T  ++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKDQYEADELFATL-DATTKSINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLV 282


>gi|320101456|ref|YP_004177048.1| small GTP-binding protein [Desulfurococcus mucosus DSM 2162]
 gi|319753808|gb|ADV65566.1| small GTP-binding protein [Desulfurococcus mucosus DSM 2162]
          Length = 338

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 8/76 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGI 277
           Y++VI G    GKS+L + L +    ++   P TTR+++   ID+D  G +V I D+ GI
Sbjct: 162 YRVVIAGVPQVGKSTLLSKLTRAR-PVIGSYPFTTRNIIVGHIDVDEAGRIVLI-DSPGI 219

Query: 278 RETD----DIVEKEGI 289
            +T     +IVEK  +
Sbjct: 220 LDTPLEEKNIVEKRAV 235


>gi|268319902|ref|YP_003293558.1| hypothetical protein FI9785_1431 [Lactobacillus johnsonii FI9785]
 gi|262398277|emb|CAX67291.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
           johnsonii FI9785]
          Length = 369

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 222 IVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I  +G +N GKS+L NA+       KDV   +  PGTT D + I L    YL+   DT G
Sbjct: 169 IYFVGTTNVGKSTLINAIINMNSDLKDVITTSKFPGTTLDEIKIPLSNGNYLI---DTPG 225

Query: 277 IRETDDIV 284
           I   + + 
Sbjct: 226 ILNANQLA 233


>gi|254839190|pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
           Methanococcus Jannaschii
 gi|254839191|pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
           Methanococcus Jannaschii
          Length = 166

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS++FNAL  ++V I  + PG T +    + +  G   K+ D  G+  
Sbjct: 4   YEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E I R ++  E  DL++
Sbjct: 63  LTANSIDEIIARDYIINEKPDLVV 86


>gi|222618017|gb|EEE54149.1| hypothetical protein OsJ_00948 [Oryza sativa Japonica Group]
          Length = 725

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 30/59 (50%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ I+G  N GKS+L N L ++   +V    G TRD +      +   V + DTAG  E
Sbjct: 299 QLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTRDSIRTQFQFDNRTVYLVDTAGWME 357



 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPG--TTRDVLTIDLDLEGYLVKISDTAGI 277
           ++++G  N GKS+LFN   ++  A+V + PG   TRD+      L     ++ D+AG+
Sbjct: 96  VILVGRPNVGKSALFNRFIRRREALVYNTPGDHVTRDIREGVAKLGDLRFRVLDSAGL 153


>gi|190891074|ref|YP_001977616.1| GTP-binding protein [Rhizobium etli CIAT 652]
 gi|190696353|gb|ACE90438.1| GTP-binding protein [Rhizobium etli CIAT 652]
 gi|327191323|gb|EGE58356.1| GTP-binding protein [Rhizobium etli CNPAF512]
          Length = 313

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 24  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++  +   +   ++ADLI+LL
Sbjct: 84  RRLDRAMVTSAWGGAKDADLIMLL 107


>gi|168217875|ref|ZP_02643500.1| GTP-binding protein [Clostridium perfringens NCTC 8239]
 gi|182380077|gb|EDT77556.1| GTP-binding protein [Clostridium perfringens NCTC 8239]
          Length = 440

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 3/64 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L   G +V + DTAG  +
Sbjct: 15  ISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFV-DTAGFDD 73

Query: 280 TDDI 283
             +I
Sbjct: 74  EGEI 77


>gi|114799800|ref|YP_759605.1| GTP-binding protein Era [Hyphomonas neptunium ATCC 15444]
 gi|114739974|gb|ABI78099.1| GTP-binding protein Era [Hyphomonas neptunium ATCC 15444]
          Length = 315

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI R G+  VI G  NAGKS+L N L    VAIVT    TTR  +     +    + I D
Sbjct: 5   EIRRAGFCAVI-GAPNAGKSTLTNRLVGAKVAIVTHKVQTTRFPVRGVAQVGDAQIVIVD 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           T GI      +++  +K  +   + AD ++ L + ++
Sbjct: 64  TPGIFAAKRRLDRAMVKAAWGGADEADCVVHLVDASA 100


>gi|94986513|ref|YP_594446.1| ribosome biogenesis GTP-binding protein YsxC [Lawsonia
           intracellularis PHE/MN1-00]
 gi|119369210|sp|Q1MSA1|ENGB_LAWIP RecName: Full=Probable GTP-binding protein EngB
 gi|94730762|emb|CAJ54124.1| predicted GTPase [Lawsonia intracellularis PHE/MN1-00]
          Length = 202

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDV 257
           N  +I + G SN GKSSL NALA +K +A  +  PG TR +
Sbjct: 30  NILQIALAGRSNVGKSSLINALAGRKQLAKTSGTPGKTRSI 70


>gi|37674224|ref|NP_932778.1| guanine nucleotide-binding protein-like 3-like protein [Mus
           musculus]
 gi|274320439|ref|NP_001162071.1| guanine nucleotide-binding protein-like 3-like protein [Mus
           musculus]
 gi|81885776|sp|Q6PGG6|GNL3L_MOUSE RecName: Full=Guanine nucleotide-binding protein-like 3-like
           protein
 gi|34784244|gb|AAH57033.1| Guanine nucleotide binding protein-like 3 (nucleolar)-like [Mus
           musculus]
 gi|50927525|gb|AAH79653.1| Guanine nucleotide binding protein-like 3 (nucleolar)-like [Mus
           musculus]
 gi|122889911|emb|CAM14868.1| guanine nucleotide binding protein-like 3 (nucleolar)-like [Mus
           musculus]
          Length = 577

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 239 RLGEV-RGHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVYLD---KFIR 294

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 295 LLDAPGI 301


>gi|70726671|ref|YP_253585.1| ribosomal biogenesis GTPase [Staphylococcus haemolyticus JCSC1435]
 gi|68447395|dbj|BAE04979.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 294

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           + +I+G  N GKS+L N LA+K++A   + PG T+    I +   G  +++ DT GI   
Sbjct: 122 RAMIVGIPNVGKSTLINKLARKNIAQTGNKPGVTKQQQWIKV---GQSLQLLDTPGILWP 178

Query: 278 RETDDIVEKE 287
           +  D+IV K+
Sbjct: 179 KFEDEIVGKK 188


>gi|18309090|ref|NP_561024.1| GTP-binding protein [Clostridium perfringens str. 13]
 gi|18143765|dbj|BAB79814.1| probaqble GTP-binding protein [Clostridium perfringens str. 13]
          Length = 454

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 3/64 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L   G +V + DTAG  +
Sbjct: 29  ISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFV-DTAGFDD 87

Query: 280 TDDI 283
             +I
Sbjct: 88  EGEI 91


>gi|29346600|ref|NP_810103.1| putative ATP GTP-binding protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|38257554|sp|Q8A8H7|RSGA1_BACTN RecName: Full=Putative ribosome biogenesis GTPase RsgA 1
 gi|29338496|gb|AAO76297.1| putative ATP GTP-binding protein [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 355

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 10/76 (13%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP---GTTRDVLT----IDLD 263
           +L E I  G  +V +G S  GKSSL NAL  K V   +DI    G  R   T    + +D
Sbjct: 189 RLRESITKGETVVFVGSSGVGKSSLVNALCGKSVLNTSDISLSTGKGRHTSTRREMVLMD 248

Query: 264 LEGYLVKISDTAGIRE 279
             G L+   DT G+RE
Sbjct: 249 GSGVLI---DTPGVRE 261


>gi|254230525|ref|ZP_04923896.1| GTP-binding protein Era [Vibrio sp. Ex25]
 gi|262393271|ref|YP_003285125.1| GTP-binding protein Era [Vibrio sp. Ex25]
 gi|151936950|gb|EDN55837.1| GTP-binding protein Era [Vibrio sp. Ex25]
 gi|262336865|gb|ACY50660.1| GTP-binding protein Era [Vibrio sp. Ex25]
          Length = 320

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  ++ +D D + Y     DT G+   
Sbjct: 29  IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGD-YQAIYVDTPGLH-- 85

Query: 281 DDIVEKEGIKRTFLEVENADL 301
             I EK  I R      N+ L
Sbjct: 86  --IEEKRAINRLMNRAANSSL 104


>gi|331266067|ref|YP_004325697.1| GTP-binding protein HflX [Streptococcus oralis Uo5]
 gi|326682739|emb|CBZ00356.1| GTP-binding protein HflX [Streptococcus oralis Uo5]
          Length = 412

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 24/191 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K +    D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNTLTSK-IQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPHLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEE----LINKIKSILSNKFKKLPFSIPSHKRHL 380
            K+DL    T T+    LIS+ + +  E     L++KIK I    F+     +P  K + 
Sbjct: 318 NKADLVEDFTPTQTPYALISAKSKDSRENLQALLLDKIKEI----FEAFTLRVPFSKSYR 373

Query: 381 YHLSQTVRYLE 391
            H  ++V  LE
Sbjct: 374 IHDLESVAILE 384


>gi|294889300|ref|XP_002772751.1| GTP-binding protein, putative [Perkinsus marinus ATCC 50983]
 gi|239877284|gb|EER04567.1| GTP-binding protein, putative [Perkinsus marinus ATCC 50983]
          Length = 317

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL-------DLEGYLVKISD 273
           +   G SNAGKSSL N L   + VA  +  PG TR + T DL       + +G  ++I D
Sbjct: 98  VAFCGRSNAGKSSLVNGLLFGRQVARASKTPGRTRQLFTFDLGRDEHIREGKGRPLRIVD 157

Query: 274 TAGI 277
             G+
Sbjct: 158 LPGL 161


>gi|218702814|ref|YP_002410443.1| putative GTPase [Escherichia coli IAI39]
 gi|218372800|emb|CAR20679.1| conserved hypothetical protein; putataive GTPase [Escherichia coli
           IAI39]
          Length = 294

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 15/200 (7%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHGVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFL-EVENADLILLLK 306
            + G TR    + L L    + + D  GI ET     E + + R  L E++    IL   
Sbjct: 68  PLNGCTRQAHRLTLQLGERRMTLVDLPGIGETPQHDQEYQALYRQLLPELDLIIWILRSD 127

Query: 307 EINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELI 355
           E     +I+  + +         F+F+ + +D      EE++      S      L  + 
Sbjct: 128 ERAYAADIAMHQFLLNEGADPSRFLFVLSHADRMFP-AEEWNATEKCPSRHQELSLATVT 186

Query: 356 NKIKSILSNKFKKLPFSIPS 375
            ++ ++  + F  LP + P+
Sbjct: 187 ARVATLFPSSFPVLPVAAPA 206


>gi|194447523|ref|YP_002048321.1| putative GTPase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194405827|gb|ACF66046.1| putative GTPase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
          Length = 294

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHSVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + G TR    + L L    + + D  GI ET
Sbjct: 68  PLNGCTRQAHRLTLQLGERRMTLVDLPGIGET 99


>gi|262370585|ref|ZP_06063910.1| GTPase EngB [Acinetobacter johnsonii SH046]
 gi|262314385|gb|EEY95427.1| GTPase EngB [Acinetobacter johnsonii SH046]
          Length = 286

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 18/101 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR----------DVLTIDLDLEGY 267
           GY+I   G SNAGKSS  NAL  +K +A  +  PG T+          D   +DL   GY
Sbjct: 62  GYEIAFAGRSNAGKSSAINALTNQKQLARASKRPGRTQMINFFSLGNPDQRLVDLPGYGY 121

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
                  A + E   IV ++ ++   ++ ++   ++LL +I
Sbjct: 122 -------AAVPEAMKIVWQKELENYLIQRKSLQGLVLLMDI 155


>gi|240102327|ref|YP_002958635.1| GTP-binding protein hflx (hflX) [Thermococcus gammatolerans EJ3]
 gi|239909880|gb|ACS32771.1| GTP-binding protein hflx (hflX) [Thermococcus gammatolerans EJ3]
          Length = 431

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G++NAGKS+L NALA + V    D   TT D  T    L    V ++DT G  +  
Sbjct: 191 IALAGYTNAGKSTLLNALAGESVE-ARDQMFTTLDTTTRRFKLGRKRVLLTDTVGFIDNL 249

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
                E    T  E+  AD++LL+
Sbjct: 250 PPFIVEAFHSTLEEIVKADIVLLV 273


>gi|171695884|ref|XP_001912866.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948184|emb|CAP60348.1| unnamed protein product [Podospora anserina S mat+]
          Length = 604

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GKSS+ NAL  K VA V  IPG T+    + L    YL+   D  G
Sbjct: 327 RKQISVGLVGYPNVGKSSIINALRGKPVAKVAPIPGETKVWQYVTLMKRIYLI---DCPG 383

Query: 277 I 277
           I
Sbjct: 384 I 384


>gi|110798691|ref|YP_694567.1| GTP-binding protein [Clostridium perfringens ATCC 13124]
 gi|110673338|gb|ABG82325.1| GTP-binding protein [Clostridium perfringens ATCC 13124]
          Length = 440

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 3/64 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L   G +V + DTAG  +
Sbjct: 15  ISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFV-DTAGFDD 73

Query: 280 TDDI 283
             +I
Sbjct: 74  EGEI 77


>gi|91213932|ref|YP_543918.1| hypothetical protein UTI89_C4984 [Escherichia coli UTI89]
 gi|110644733|ref|YP_672463.1| hypothetical protein ECP_4626 [Escherichia coli 536]
 gi|191170785|ref|ZP_03032337.1| putative GTPase [Escherichia coli F11]
 gi|23954294|emb|CAD42093.1| hypothetical protein [Escherichia coli]
 gi|91075506|gb|ABE10387.1| hypothetical protein UTI89_C4984 [Escherichia coli UTI89]
 gi|110346325|gb|ABG72562.1| hypothetical protein ECP_4626 [Escherichia coli 536]
 gi|190909009|gb|EDV68596.1| putative GTPase [Escherichia coli F11]
 gi|307629449|gb|ADN73753.1| hypothetical protein UM146_22145 [Escherichia coli UM146]
 gi|330907968|gb|EGH36487.1| ngrB [Escherichia coli AA86]
          Length = 294

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 15/200 (7%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHGVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFL-EVENADLILLLK 306
            + G TR    + L L    + + D  GI ET     E + + R  L E++    IL   
Sbjct: 68  PLNGCTRQAHRLTLQLGERRMTLVDLPGIGETPQHDQEYQALYRQLLPELDLIIWILRSD 127

Query: 307 EINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELI 355
           E     +I+  + +         F+F+ + +D      EE++      S      L  + 
Sbjct: 128 ERAYAADIAMHQFLLNEGADPSRFLFVLSHADRMFP-AEEWNATEKCPSRHQELSLATVT 186

Query: 356 NKIKSILSNKFKKLPFSIPS 375
            ++ ++  + F  LP + P+
Sbjct: 187 ARVATLFPSSFPVLPVAAPA 206


>gi|48477951|ref|YP_023657.1| GTP-binding protein [Picrophilus torridus DSM 9790]
 gi|48430599|gb|AAT43464.1| GTP-binding protein [Picrophilus torridus DSM 9790]
          Length = 324

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 26/237 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS--KEVLNDILFLKNDIS 204
           ++  S  +  L   +I KL + ++  E  ++   +     FSS  K + +D++FL N   
Sbjct: 93  VQWTSDNIKRLSTDYIKKLRYAKTINE--MNVLMKSYYGRFSSLVKNINDDLVFLGN--- 147

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
              S  +L  II +    ++ G  NAGKSSL + +      I    P TT D++      
Sbjct: 148 CRDSMRRLPGIITDMPTFIMAGMPNAGKSSLISKITDVRPKIAP-YPFTTLDIIIGYRSF 206

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-------------KEINSK 311
           +    +  DT G+ + D     +  K+  + +   D I+L                + S+
Sbjct: 207 KSGKAQFIDTPGLLDRDMSRRNDMEKKAIIALSYIDGIILFLFDYSGQVDLDAQARLYSE 266

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
              +FP  I  I + TK DL   Y    D  +S+ TG+G++  +  I+  +   +++
Sbjct: 267 IRENFPNRI--IRVQTKLDLSKRYE---DIAVSAVTGDGMDHFMEFIEGEVGEYYRR 318


>gi|323489565|ref|ZP_08094792.1| hypothetical protein GPDM_09470 [Planococcus donghaensis MPA1U2]
 gi|323396696|gb|EGA89515.1| hypothetical protein GPDM_09470 [Planococcus donghaensis MPA1U2]
          Length = 288

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 8/86 (9%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYK-----IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
           L L    S  I + K   +I  G K      +I+G  N GKS+L N L+KK +A   ++P
Sbjct: 93  LQLVTKASKEILEEKWDRMIAKGIKPRAIRAMIVGIPNVGKSTLINRLSKKSLAKTGNMP 152

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGI 277
           G T+    I +   G  +++ DT GI
Sbjct: 153 GVTKAQQWIKV---GKEIELLDTPGI 175


>gi|322383675|ref|ZP_08057426.1| Era-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151887|gb|EFX44830.1| Era-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 300

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           + G+K   + ++G  N GKS+L N +  + +AI++D P TTR+ +      E   +   D
Sbjct: 4   KKGFKSGFVALIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTTEHAQIVFLD 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           T GI +    +    +K     +   D IL L ++
Sbjct: 64  TPGIHKPQSKLGDYMMKVAHSTLAEVDAILFLVDV 98


>gi|297571233|ref|YP_003697007.1| GTP-binding proten HflX [Arcanobacterium haemolyticum DSM 20595]
 gi|296931580|gb|ADH92388.1| GTP-binding proten HflX [Arcanobacterium haemolyticum DSM 20595]
          Length = 526

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 32/175 (18%)

Query: 226 GHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           G++NAGKSSL N L    V    A+   +  T R   T D    G    ++DT G     
Sbjct: 309 GYTNAGKSSLLNTLTGAGVLVENALFATLDPTVRRTQTAD----GREYTLTDTVGFVRNL 364

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFIGTK 328
                E  + T  EV  ADL+L + + +                ++     +  + + +K
Sbjct: 365 PTQLVEAFRSTLEEVGQADLLLHVVDASHHDPVGQIQAVRSVLADVPGADTVRELIVLSK 424

Query: 329 SDL---------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +DL          S Y +    L+S+ +GEG+ EL  +I  +L      +  +IP
Sbjct: 425 ADLADPIDVAALRSRYPDSV--LVSAVSGEGIAELEERIDQLLPRPQILIDLTIP 477


>gi|283769488|ref|ZP_06342384.1| ribosome biogenesis GTP-binding protein YsxC [Bulleidia extructa
           W1219]
 gi|283103756|gb|EFC05142.1| ribosome biogenesis GTP-binding protein YsxC [Bulleidia extructa
           W1219]
          Length = 195

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 30/172 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTR-------DVLTIDLDLEGYLVKISD 273
           IV +G SNAGKSSL NAL  ++ +A     PG TR       +   +  D  GY   + +
Sbjct: 26  IVFVGRSNAGKSSLINALVNRNQLAYTGKTPGKTRLLNFFVVNAQFVFTDAPGYGYAVGN 85

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTK 328
              + E  +++E    KR+ L+     L+L  +   S+++I+        ++  + + TK
Sbjct: 86  RDSLIEFGNLMEPYFEKRSNLKA--MVLVLDCRRTPSREDIAMVDYAKANHLAILVVCTK 143

Query: 329 SDLYS---------TYTEEYDHLISSFTG------EGLEELINKIKSILSNK 365
            D  S            +E     SSF        +G++E+ +KI   LS K
Sbjct: 144 KDKLSYGKLKNQQFMIAKELKLNASSFLAVDSVKKQGIDEVWHKIHETLSLK 195


>gi|118479060|ref|YP_896211.1| ribosomal biogenesis GTPase [Bacillus thuringiensis str. Al Hakam]
 gi|118418285|gb|ABK86704.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           str. Al Hakam]
          Length = 314

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 140 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 193


>gi|305665676|ref|YP_003861963.1| GTP-binding protein HflX [Maribacter sp. HTCC2170]
 gi|88710434|gb|EAR02666.1| GTP-binding protein HflX [Maribacter sp. HTCC2170]
          Length = 403

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 25/164 (15%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDV 257
           D      +G  G ++R    + ++G++N GKS+L N ++K DV     +   +  T R V
Sbjct: 186 DKQMETQRGNRGAMVR----VALVGYTNVGKSTLMNVISKSDVFAENKLFATLDTTVRKV 241

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEI 314
           +  +L        +SDT G          E  K T  EV  ADL+L + +I   N ++ I
Sbjct: 242 VIGNLPF-----LLSDTVGFIRKLPTQLVESFKSTLDEVREADLLLHVVDISHPNFEEHI 296

Query: 315 SFPKNI---------DFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
               NI           I +  K D Y   T + D LI+  T +
Sbjct: 297 ESVNNILAEIKSADKKTIMVFNKIDQYKHETIDDDDLITERTSK 340


>gi|332305562|ref|YP_004433413.1| GTP-binding protein Era [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172891|gb|AEE22145.1| GTP-binding protein Era [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 300

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L NAL  + V+I +  P TTR  ++ ID +     + + DT G+   
Sbjct: 10  IAIVGRPNVGKSTLLNALLGQKVSITSRKPQTTRHRIMGIDTEENRQAIYV-DTPGLH-- 66

Query: 281 DDIVEKEGIKR 291
             I EK  I R
Sbjct: 67  --IEEKRAINR 75


>gi|218462892|ref|ZP_03502983.1| GTP-binding protein Era [Rhizobium etli Kim 5]
 gi|218663007|ref|ZP_03518937.1| GTP-binding protein Era [Rhizobium etli IE4771]
          Length = 313

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 24  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++  +   +   ++ADLI+LL
Sbjct: 84  RRLDRAMVTSAWGGAKDADLIMLL 107


>gi|218283551|ref|ZP_03489541.1| hypothetical protein EUBIFOR_02131 [Eubacterium biforme DSM 3989]
 gi|218215819|gb|EEC89357.1| hypothetical protein EUBIFOR_02131 [Eubacterium biforme DSM 3989]
          Length = 281

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 12/121 (9%)

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
           L  QW++ L      + A LDF  E    NFS + +        N I     +G     +
Sbjct: 68  LTKQWVNALETENQKVLA-LDFIHE----NFSKQLIKASNELCINLIEKQKRRGMKPRAL 122

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R     ++ G  N GKS+  N  AK+  A   D PG T+ +  I +   G  +++ DT G
Sbjct: 123 R----AMVCGIPNVGKSTFINTFAKRKAAQTGDRPGVTKSLQWIKV---GQTLELLDTPG 175

Query: 277 I 277
           +
Sbjct: 176 V 176


>gi|198276140|ref|ZP_03208671.1| hypothetical protein BACPLE_02329 [Bacteroides plebeius DSM 17135]
 gi|198270952|gb|EDY95222.1| hypothetical protein BACPLE_02329 [Bacteroides plebeius DSM 17135]
          Length = 418

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 22/123 (17%)

Query: 192 VLNDILFLKN-----DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-- 244
           +LN +  LK      D      +   G +IR    + ++G++N GKS+L N LAK +V  
Sbjct: 188 ILNRMALLKQRLAEIDTQKSTQRKNRGRMIR----VALVGYTNVGKSTLMNLLAKSEVFA 243

Query: 245 --AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300
              +   +  T R V+     +E     +SDT G IR+   D+V  +  K T  EV  AD
Sbjct: 244 ENKLFATLDTTVRKVI-----IENLPFLLSDTVGFIRKLPTDLV--DSFKSTLDEVREAD 296

Query: 301 LIL 303
           L++
Sbjct: 297 LLV 299


>gi|68074875|ref|XP_679354.1| autoantigen ngp-1 [Plasmodium berghei strain ANKA]
 gi|56500083|emb|CAI04562.1| autoantigen ngp-1, putative [Plasmodium berghei]
          Length = 503

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 17/100 (17%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           F KN    HI  G             ++G+ N GKS++ N+L KK V I   IPG T+  
Sbjct: 300 FFKNMKKKHIHIG-------------LIGYPNVGKSAVINSLKKKVVCISACIPGQTKYW 346

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
             I L  + YL+   D  GI    DI + + I R  + +E
Sbjct: 347 QFIKLTNKIYLI---DCPGIVPY-DIEDSDKILRCTMRLE 382


>gi|332876945|ref|ZP_08444698.1| ribosome biogenesis GTPase Era [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332685053|gb|EGJ57897.1| ribosome biogenesis GTPase Era [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 293

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   +  + + V  SDT GI +    
Sbjct: 9   IIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRIFGIVSGDDFQVVFSDTPGIIKPAYA 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311
           +++  +       ++AD+++ + EI  K
Sbjct: 69  LQESMMAFVKDAFDDADILIYMVEIGEK 96


>gi|328474122|gb|EGF44927.1| GTPase Era [Vibrio parahaemolyticus 10329]
          Length = 303

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  ++ +D D + Y     DT G+   
Sbjct: 12  IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGD-YQAIYVDTPGLH-- 68

Query: 281 DDIVEKEGIKRTFLEVENADL 301
             I EK  I R      N+ L
Sbjct: 69  --IEEKRAINRLMNRAANSSL 87


>gi|323700011|ref|ZP_08111923.1| GTP-binding protein Era [Desulfovibrio sp. ND132]
 gi|323459943|gb|EGB15808.1| GTP-binding protein Era [Desulfovibrio desulfuricans ND132]
          Length = 302

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I ++G  NAGKS+L N    + VAIV+  P TTR+ ++  L  +   +   DT G+
Sbjct: 7   IALIGPPNAGKSTLMNTYIGQKVAIVSPKPQTTRNRISGILTTDDAQLVFLDTPGV 62


>gi|320108428|ref|YP_004184018.1| GTP-binding proten HflX [Terriglobus saanensis SP1PR4]
 gi|319926949|gb|ADV84024.1| GTP-binding proten HflX [Terriglobus saanensis SP1PR4]
          Length = 500

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 12/95 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL------VKISDTA 275
           + ++G++NAGKS+LFNAL +  V        ++R   T+D  L  ++      V +SDT 
Sbjct: 252 VALVGYTNAGKSTLFNALTEAGVL------ASSRMFATLDPKLRQFVLPSRRKVLLSDTV 305

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           G             + T  EVE A+L+L +++ +S
Sbjct: 306 GFIRNLPHALVTSFRATLEEVERAELLLHVRDASS 340


>gi|312113265|ref|YP_004010861.1| ribosome biogenesis GTP-binding protein YsxC [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218394|gb|ADP69762.1| ribosome biogenesis GTP-binding protein YsxC [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 214

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTRDV 257
           N  ++   G SN GKSSL NA L+++++A V++ PG TR+V
Sbjct: 41  NRPEVAFAGRSNVGKSSLLNALLSRRNLARVSNTPGRTREV 81


>gi|254839194|pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
           Methanococcus Jannaschii
 gi|254839195|pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
           Methanococcus Jannaschii
          Length = 168

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS++FNAL  ++V I  + PG T +    + +  G   K+ D  G+  
Sbjct: 5   YEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 63

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E I R ++  E  DL++
Sbjct: 64  LTANSIDEIIARDYIINEKPDLVV 87


>gi|229018894|ref|ZP_04175738.1| hypothetical protein bcere0030_34090 [Bacillus cereus AH1273]
 gi|229025133|ref|ZP_04181559.1| hypothetical protein bcere0029_34370 [Bacillus cereus AH1272]
 gi|228736168|gb|EEL86737.1| hypothetical protein bcere0029_34370 [Bacillus cereus AH1272]
 gi|228742403|gb|EEL92559.1| hypothetical protein bcere0030_34090 [Bacillus cereus AH1273]
          Length = 424

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVALIGYTNAGKSTLFNRLTEADT-FEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|224368961|ref|YP_002603125.1| hypothetical protein HRM2_18590 [Desulfobacterium autotrophicum
           HRM2]
 gi|223691678|gb|ACN14961.1| hypothetical protein HRM2_18590 [Desulfobacterium autotrophicum
           HRM2]
          Length = 552

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 35/176 (19%)

Query: 217 RNGYKIV-ILGHSNAGKSSLFNALAKKDVA-----IVTDIPGTTRDVLTIDLDLEGYLVK 270
           R G  ++ I+G++NAGKS+L N L K ++        T  P + R  L    DLE   V 
Sbjct: 383 RRGIPVISIVGYTNAGKSTLLNTLTKSEIIAENRLFATLDPSSRR--LRFPKDLE---VI 437

Query: 271 ISDTAGIRETDDIVEK--EGIKRTFLEVENADLILLLKEINSK-------------KEIS 315
           I+DT G     D+ E+  E    T  E+E+AD++L + +I++              KE+ 
Sbjct: 438 ITDTVGF--IQDLPEELMEAFHATLEELEDADILLHVVDISNPRYEQQMGSVERILKELG 495

Query: 316 FPKNIDFIFIGTK------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
             K    +++  K      +D  + +      L+S+   E L+ L+++++S++  +
Sbjct: 496 LEKT-PVLYVFNKQDKIALADFDNPWLLNQGSLVSATRPETLKPLVSRLESMIRQQ 550


>gi|197337347|ref|YP_002158107.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio fischeri MJ11]
 gi|197314599|gb|ACH64048.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio fischeri MJ11]
          Length = 311

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E +    + +I+G  N GKS++ N LA + +A+  + P  TR    I+L   G  V +SD
Sbjct: 109 EAMGKNVRTMIMGIPNVGKSTIINTLAGRTIAVTGNQPAVTRRQQRINLQ-NG--VVLSD 165

Query: 274 TAGI 277
           T GI
Sbjct: 166 TPGI 169


>gi|182417604|ref|ZP_02948926.1| GTP-binding protein [Clostridium butyricum 5521]
 gi|237668408|ref|ZP_04528392.1| ribosome biogenesis GTP-binding protein YsxC [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378559|gb|EDT76088.1| GTP-binding protein [Clostridium butyricum 5521]
 gi|237656756|gb|EEP54312.1| ribosome biogenesis GTP-binding protein YsxC [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 198

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 27/132 (20%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR---------DVLTIDLDLEGY 267
           N  ++  +G SN GKSS+ N+L  +K +A V+  PG TR         D   +DL   GY
Sbjct: 22  NRNEVAFVGRSNVGKSSIINSLTNRKKLAKVSGTPGKTRLVNFFLINNDFYLVDLPGYGY 81

Query: 268 LVKIS----DTAGIRETDDIVEKEGIKRTFLEVEN-----ADLILLLKEINSKKEISFPK 318
             K+S    D+ G      + E+E +KR  L V++      D IL+        E +   
Sbjct: 82  -AKVSKSEKDSWGKTIEMYLTEREQLKRIVLLVDSRHKPTGDDILMY-------EWAKHF 133

Query: 319 NIDFIFIGTKSD 330
             D + + TKSD
Sbjct: 134 GYDVVVVATKSD 145


>gi|170047318|ref|XP_001851173.1| Cdc42 protein [Culex quinquefasciatus]
 gi|167869759|gb|EDS33142.1| Cdc42 protein [Culex quinquefasciatus]
          Length = 190

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 23/146 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IV++G    GK+ L +A   +  +IV       ++ + + LD   + +++ DTAG +E  
Sbjct: 12  IVVVGDGTVGKTCLLHAYTDETFSIVYQPTIYDKESIEMVLDGRKHTIQLHDTAG-QEDY 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK-----------KEISFPKNIDFIFIGTKSD 330
           D + ++  KR       A   LL   IN++            EI+  + +  + I TK D
Sbjct: 71  DRIRQQFYKR-------AHCFLLCYSINNRISFENVTTKWVPEITAGQPVPIVLIATKID 123

Query: 331 LYSTYTEEYDHLISSFTGEGLEELIN 356
           L      E D+ +++  G+ L   IN
Sbjct: 124 L----RREADNEVTTEEGQRLARKIN 145


>gi|91227851|ref|ZP_01262024.1| GTP-binding protein Era [Vibrio alginolyticus 12G01]
 gi|269965786|ref|ZP_06179883.1| GTP-binding protein [Vibrio alginolyticus 40B]
 gi|91188361|gb|EAS74657.1| GTP-binding protein Era [Vibrio alginolyticus 12G01]
 gi|269829654|gb|EEZ83891.1| GTP-binding protein [Vibrio alginolyticus 40B]
          Length = 320

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  ++ +D D + Y     DT G+   
Sbjct: 29  IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGD-YQAIYVDTPGLH-- 85

Query: 281 DDIVEKEGIKRTFLEVENADL 301
             I EK  I R      N+ L
Sbjct: 86  --IEEKRAINRLMNRAANSSL 104


>gi|42519031|ref|NP_964961.1| hypothetical protein LJ1105 [Lactobacillus johnsonii NCC 533]
 gi|41583318|gb|AAS08927.1| hypothetical protein LJ_1105 [Lactobacillus johnsonii NCC 533]
          Length = 279

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 12/116 (10%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL--KNDISSHISQGKLGEIIRNGYK 221
           K TH   + + + +F    D Q+ ++   L  I+ L  K      I++G    +IR    
Sbjct: 71  KWTH---YYQDEGNFVISMDAQHTTNMTSLFKIIKLAGKEKTDKLIAKGASNPMIR---- 123

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G  N GKS++ N +  ++ AIV D PG TR    +        V+I DT GI
Sbjct: 124 VAIAGIPNCGKSTIINRMVGRNAAIVGDKPGVTRGQSWLKTKTN---VQILDTPGI 176


>gi|146277534|ref|YP_001167693.1| GTP-binding protein, HSR1-related [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555775|gb|ABP70388.1| GTP-binding protein, HSR1-related [Rhodobacter sphaeroides ATCC
           17025]
          Length = 448

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 29/165 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +   +V +  D+   T D     + L  G  V +SDT G    
Sbjct: 230 VALVGYTNAGKSTLFNRMTGAEV-LAKDMLFATLDPTMRGVTLPSGRKVILSDTVGF--I 286

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTK--SDLYST 334
            D+  +     + T  EV  ADLIL +++I   +      ++  I   +G K  +  Y  
Sbjct: 287 SDLPTQLVAAFRATLEEVLEADLILHVRDIAHPETAEQAADVAEILQSLGVKGATPQYEV 346

Query: 335 YTE-------EYDHLI------------SSFTGEGLEELINKIKS 360
           + +        ++ L+            S+ TGEGL EL+  + +
Sbjct: 347 WNKLDLVEGSAHEQLVAQAQRSETVFALSALTGEGLPELLEAVSA 391


>gi|328848787|gb|EGF97985.1| hypothetical protein MELLADRAFT_113929 [Melampsora larici-populina
           98AG31]
          Length = 320

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL------VKI 271
            G++I++ G  N GK SL NAL +        +PG TR +  I   LE +L      V +
Sbjct: 110 QGFRIMVCGMPNVGKPSLLNALTRVGCQEEAPMPGYTRSIGGIVKILEPFLKRHGKSVYM 169

Query: 272 SDTAGI 277
            DT GI
Sbjct: 170 IDTPGI 175


>gi|148675551|gb|EDL07498.1| guanine nucleotide binding protein-like 3 (nucleolar)-like [Mus
           musculus]
          Length = 598

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 260 RLGEV-RGHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVYLD---KFIR 315

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 316 LLDAPGI 322


>gi|145296240|ref|YP_001139061.1| hypothetical protein cgR_2157 [Corynebacterium glutamicum R]
 gi|140846160|dbj|BAF55159.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 143

 Score = 38.9 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI  + P TTR  +   +  +   + + DT G
Sbjct: 11  RSGF-VSFVGRPNTGKSTLTNALVGEKIAITANQPETTRHPIRGLVHRDNAQIIVVDTPG 69

Query: 277 IRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK 311
           +     ++ +   E +K T+ +V   DLI      N K
Sbjct: 70  LHRPRTLLGERLNEAVKDTYADV---DLIGFTVPANEK 104


>gi|59713694|ref|YP_206469.1| ribosomal biogenesis GTPase [Vibrio fischeri ES114]
 gi|59481942|gb|AAW87581.1| GTP-binding protein [Vibrio fischeri ES114]
          Length = 314

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E +    + +I+G  N GKS++ N LA + +A+  + P  TR    I+L   G  V +SD
Sbjct: 112 EAMGKNVRTMIMGIPNVGKSTIINTLAGRTIAVTGNQPAVTRRQQRINLQ-NG--VVLSD 168

Query: 274 TAGI 277
           T GI
Sbjct: 169 TPGI 172


>gi|159116157|ref|XP_001708300.1| Nucleolar GTPase [Giardia lamblia ATCC 50803]
 gi|157436411|gb|EDO80626.1| Nucleolar GTPase [Giardia lamblia ATCC 50803]
          Length = 541

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R      ++G  N GKSS+ N+L+ ++   V  IPG T+ +  I +DL    ++I D+ 
Sbjct: 277 MRTKIVAAVVGIPNVGKSSIINSLSSRNAVGVAPIPGYTKKISEIHIDLR---LRILDSP 333

Query: 276 GI 277
           G+
Sbjct: 334 GV 335


>gi|325915828|ref|ZP_08178127.1| GTP-binding protein Era [Xanthomonas vesicatoria ATCC 35937]
 gi|325537949|gb|EGD09646.1| GTP-binding protein Era [Xanthomonas vesicatoria ATCC 35937]
          Length = 299

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+L NAL    V+IV++ P TTR  +L I    EG L  + DT G+
Sbjct: 12  VAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLALV-DTPGL 67


>gi|317497643|ref|ZP_07955959.1| ribosome biogenesis GTP-binding protein YsxC [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|291559839|emb|CBL38639.1| ribosome biogenesis GTP-binding protein YsxC/EngB
           [butyrate-producing bacterium SSC/2]
 gi|316895074|gb|EFV17240.1| ribosome biogenesis GTP-binding protein YsxC [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 200

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +   G SN GKSSL NAL  +K  A ++  PG T+ +   +++ E Y V +      + T
Sbjct: 26  VAFAGKSNVGKSSLINALMNRKSYARISAQPGKTQTINYYNINEELYYVDLPGYGFAKVT 85

Query: 281 DDIVEKEG--IKRTFLEVENADLILLLKEINSK 311
             + EK G  I+      +   ++ LL +I  K
Sbjct: 86  QSVKEKWGHMIENYLQTSKQLKMVFLLIDIRHK 118


>gi|239982716|ref|ZP_04705240.1| ATP/GTP-binding protein [Streptomyces albus J1074]
 gi|291454564|ref|ZP_06593954.1| ATP/GTP-binding protein [Streptomyces albus J1074]
 gi|291357513|gb|EFE84415.1| ATP/GTP-binding protein [Streptomyces albus J1074]
          Length = 509

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 21/173 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I G++NAGKSSL N L    V +   +  T    +       G L  ++DT G +R  
Sbjct: 290 VAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRAETPSGRLYTLADTVGFVRHL 349

Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI---SFPKNIDFIFIGTK 328
              +  E  + T  EV ++DLIL +         +++ + +E+       N+  I +  K
Sbjct: 350 PHHL-VEAFRSTMEEVGDSDLILHVVDGAHPAPEEQLAAVREVIRDVGAVNVPEIVVVNK 408

Query: 329 SDLYST-------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +D             E++   +S+ TG G+ EL+  I  IL     +L   IP
Sbjct: 409 ADAADPLVLQRLLRVEKHAIAVSARTGAGIGELLGMIDEILPRPEVELEALIP 461


>gi|224029967|gb|ACN34059.1| unknown [Zea mays]
          Length = 592

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I+G  N GKSSL N+L +  V  V   PG TR +  + LD +   VK+ D  G+
Sbjct: 274 IVGLPNVGKSSLINSLKRSRVVNVGSTPGVTRSMQEVQLDKK---VKLLDCPGV 324


>gi|195656991|gb|ACG47963.1| guanine nucleotide-binding protein-like 3 [Zea mays]
          Length = 592

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I+G  N GKSSL N+L +  V  V   PG TR +  + LD +   VK+ D  G+
Sbjct: 274 IVGLPNVGKSSLINSLKRSRVVNVGSTPGVTRSMQEVQLDKK---VKLLDCPGV 324


>gi|171920840|ref|ZP_02695919.2| GTP-binding protein [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|171903040|gb|EDT49329.1| GTP-binding protein [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
          Length = 57

 Score = 38.9 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 27/37 (72%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           + I+G  N GKS+L NA+ +K V+I+++ P TTR+ +
Sbjct: 8   VAIVGKPNVGKSTLINAIMRKKVSIISNKPQTTRNAI 44


>gi|168038920|ref|XP_001771947.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676729|gb|EDQ63208.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++    + ++G  N GKSSL N+L +  VA V   PG T+ +  I LD     VK+ D  
Sbjct: 242 MKTAITVGVVGFPNVGKSSLINSLKRTRVASVGATPGVTKAMQEIHLDKH---VKLLDCP 298

Query: 276 GI 277
           GI
Sbjct: 299 GI 300


>gi|15893739|ref|NP_347088.1| ferrous iron transport protein B (feoB-2) [Clostridium
           acetobutylicum ATCC 824]
 gi|15023304|gb|AAK78428.1|AE007559_6 Ferrous iron transport protein B (feoB-2) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507862|gb|ADZ19498.1| Ferrous iron transport protein B (feoB-2) [Clostridium
           acetobutylicum EA 2018]
          Length = 587

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 10/83 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIRET 280
           ++G+ N GK+SLFN L   +   V +  G T +        EGYL   +KI D  GI   
Sbjct: 6   LIGNPNVGKTSLFNVLTGSN-QYVGNWAGVTVE------KKEGYLEKNIKIVDLPGIYAM 58

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           D    +E + + FL+  + D+I+
Sbjct: 59  DTYSNEEKVSKEFLKNGDVDIII 81


>gi|126463487|ref|YP_001044601.1| ribosome biogenesis GTP-binding protein YsxC [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332559540|ref|ZP_08413862.1| GTP-binding protein YsxC [Rhodobacter sphaeroides WS8N]
 gi|126105151|gb|ABN77829.1| GTP-binding protein, HSR1-related [Rhodobacter sphaeroides ATCC
           17029]
 gi|332277252|gb|EGJ22567.1| GTP-binding protein YsxC [Rhodobacter sphaeroides WS8N]
          Length = 217

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++   G SN GKSSL NAL  +K +A  ++ PG T+++    L    YLV +        
Sbjct: 47  EVCFAGRSNVGKSSLINALTGRKSLARASNTPGRTQEINYFALGPSRYLVDLPGYGYAEA 106

Query: 280 TDDIVEK 286
              IVE+
Sbjct: 107 PKPIVER 113


>gi|330874724|gb|EGH08873.1| hypothetical protein PSYMP_08045 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965451|gb|EGH65711.1| hypothetical protein PSYAC_12506 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 462

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  LV++ DT G+
Sbjct: 11  KLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVDGQALVELYDTPGL 69


>gi|319939094|ref|ZP_08013458.1| GTP-binding protein [Streptococcus anginosus 1_2_62CV]
 gi|319812144|gb|EFW08410.1| GTP-binding protein [Streptococcus anginosus 1_2_62CV]
          Length = 283

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 11/82 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-- 255
            +K  I+    +G   E +R     +I+G  NAGKS+L N LA K +A+  + PG T+  
Sbjct: 104 LMKEKIARQKERGIQIETLRT----MIIGIPNAGKSTLMNRLAGKKIAVTGNKPGVTKGQ 159

Query: 256 DVLTIDLDLEGYLVKISDTAGI 277
             L  + +LE     I DT GI
Sbjct: 160 QWLKSNRNLE-----ILDTPGI 176


>gi|300858660|ref|YP_003783643.1| GTPase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686114|gb|ADK29036.1| GTPase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206368|gb|ADL10710.1| Putative GTP-binding protein hflX [Corynebacterium
           pseudotuberculosis C231]
 gi|302330924|gb|ADL21118.1| Putative GTP-binding protein hflX [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276610|gb|ADO26509.1| Putative GTP-binding protein hflX [Corynebacterium
           pseudotuberculosis I19]
          Length = 546

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           +I I G++NAGKSSL NAL    V +V D    T D  T   +L +G  V  +DT G   
Sbjct: 322 QIAIAGYTNAGKSSLINALTDAGV-LVEDALFATLDPTTRRAELADGRSVVFTDTVGFVR 380

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E  + T  EV  ADL+L
Sbjct: 381 HLPTQLVEAFRSTLEEVVGADLVL 404


>gi|168205737|ref|ZP_02631742.1| GTP-binding protein [Clostridium perfringens E str. JGS1987]
 gi|170662809|gb|EDT15492.1| GTP-binding protein [Clostridium perfringens E str. JGS1987]
          Length = 440

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 3/64 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L   G +V + DTAG  +
Sbjct: 15  ISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFV-DTAGFDD 73

Query: 280 TDDI 283
             +I
Sbjct: 74  EGEI 77


>gi|118444749|ref|YP_878552.1| GTP-binding protein Era [Clostridium novyi NT]
 gi|189037263|sp|A0Q1Q0|ERA_CLONN RecName: Full=GTPase Era
 gi|118135205|gb|ABK62249.1| GTP-binding protein Era [Clostridium novyi NT]
          Length = 294

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ I I+G  N GKS+L N +  + ++IV+  P TTR+ +   L  + Y +   DT
Sbjct: 1   MFKSGF-ISIIGRPNVGKSTLTNEILGEKLSIVSCRPQTTRNNIRAVLTRDDYQLVFLDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +K      +  DLI+ +
Sbjct: 60  PGIHKPRHKLGEYMVKAAETSTDEVDLIVFI 90


>gi|145595961|ref|YP_001160258.1| GTP-binding protein Era [Salinispora tropica CNB-440]
 gi|145305298|gb|ABP55880.1| GTP-binding protein Era [Salinispora tropica CNB-440]
          Length = 299

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 214 EIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           E +R  Y+      +G  NAGKS+L NA+  + +AI +  P TTR V+   L      + 
Sbjct: 4   ENLRQPYRAGFGCFVGRPNAGKSTLTNAIVGQKIAITSSKPQTTRHVIRAVLHRPDSQLV 63

Query: 271 ISDTAGI 277
           + DT G+
Sbjct: 64  LVDTPGL 70


>gi|110832874|ref|YP_691733.1| hypothetical protein ABO_0013 [Alcanivorax borkumensis SK2]
 gi|110645985|emb|CAL15461.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 493

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
           +  ++GH N GKSS+   LA+ D   +   PGTTRD     + ++   L ++ DT G + 
Sbjct: 21  RFAVVGHPNKGKSSVVATLAQNDSIAIAMEPGTTRDSHRYPMKVDDVTLYELIDTPGFQR 80

Query: 280 TDDIV 284
              ++
Sbjct: 81  PRKVL 85


>gi|51891672|ref|YP_074363.1| Era family GTP-binding protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51855361|dbj|BAD39519.1| Era family GTP-binding protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 316

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G   R+G+   I+G  N GKS+L NA     +AI++D P TTR+ +    +     V   
Sbjct: 3   GAPFRSGF-CSIVGRPNVGKSTLLNAFVAAKLAIMSDKPQTTRNRILGVYNRPDAQVVFL 61

Query: 273 DTAGI 277
           DT GI
Sbjct: 62  DTPGI 66


>gi|39938503|ref|NP_950269.1| ribosome biogenesis GTP-binding protein YsxC [Onion yellows
           phytoplasma OY-M]
 gi|39721612|dbj|BAD04102.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 196

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           IV++G SN GKS+  NAL  +K +A ++  PG T  +   D++   YL+   DT G
Sbjct: 25  IVLMGRSNVGKSTFINALTQRKKLAKISQTPGKTITLNYYDINESFYLI---DTPG 77


>gi|326402426|ref|YP_004282507.1| GTP-binding protein Era [Acidiphilium multivorum AIU301]
 gi|325049287|dbj|BAJ79625.1| GTP-binding protein Era [Acidiphilium multivorum AIU301]
          Length = 295

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R GY + +LG  NAGKS+L N      V+IVT    TTR  ++  +   G  + + DT G
Sbjct: 4   RCGY-VALLGRPNAGKSTLLNQAVGAKVSIVTPKAQTTRFRISGIVMRGGDQIVLVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I      +++  +   +  V  ADL  L+
Sbjct: 63  IFAPKRRLDRAMVAAAWEGVAGADLACLI 91


>gi|323490387|ref|ZP_08095602.1| hypothetical protein GPDM_13581 [Planococcus donghaensis MPA1U2]
 gi|323396057|gb|EGA88888.1| hypothetical protein GPDM_13581 [Planococcus donghaensis MPA1U2]
          Length = 337

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 7/85 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRET 280
           I ++G  NAGKS+  N +  +D+A    +PG T  V   ++  LE   +K  DT G+ + 
Sbjct: 34  ISLIGEVNAGKSTTVNKIIGEDIASTNPMPGETVSVDPYNIRGLEN--IKFMDTPGLNDP 91

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
           +D    E  K+T   V+ +D++L  
Sbjct: 92  ND----ENPKKTLEFVQKSDVVLFF 112


>gi|302534327|ref|ZP_07286669.1| GTP-binding protein Era [Streptomyces sp. C]
 gi|302443222|gb|EFL15038.1| GTP-binding protein Era [Streptomyces sp. C]
          Length = 316

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   + G  NAGKS+L NAL    VAI ++ P TTR  +   +      + + DT G
Sbjct: 16  RAGFACFV-GRPNAGKSTLTNALVGTKVAITSNRPQTTRHTVRGIVHRPDAQLVLVDTPG 74

Query: 277 IRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEISFPKNIDFIFIGT 327
           + +   ++ +   + ++ T+ EV+       AD  L   +    KE++  K    I I T
Sbjct: 75  LHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKFIAKELAGIKKTPKIAIVT 134

Query: 328 KSDLYST 334
           K+DL  +
Sbjct: 135 KTDLVES 141


>gi|323342870|ref|ZP_08083102.1| ribosome biogenesis GTP-binding protein YsxC [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463982|gb|EFY09176.1| ribosome biogenesis GTP-binding protein YsxC [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 191

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 9/114 (7%)

Query: 201 NDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVL 258
           ND    IS     +    G K IV++G SN GKSSL NA+  +K +A V   PG TR + 
Sbjct: 6   NDAQLIISAAHSSQFPETGQKEIVMVGKSNVGKSSLINAITNRKKLAYVGQTPGKTRLIN 65

Query: 259 TIDLDLEGYLVKISDTAGI----RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
              ++ E   V ++D  G     R   + +    +  ++ E+ +  ++L+L ++
Sbjct: 66  FYHINEE---VILTDVPGYGFANRSKQEQIHYGTLMDSYFELRHPSVMLVLVDV 116


>gi|163802959|ref|ZP_02196846.1| GTP-binding protein Era [Vibrio sp. AND4]
 gi|159173249|gb|EDP58077.1| GTP-binding protein Era [Vibrio sp. AND4]
          Length = 320

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  ++ +D D + Y     DT G+   
Sbjct: 29  IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGD-YQAIYVDTPGLH-- 85

Query: 281 DDIVEKEGIKRTFLEVENADL 301
             I EK  I R      N+ L
Sbjct: 86  --IEEKRAINRLMNRAANSSL 104


>gi|152976204|ref|YP_001375721.1| ribosomal biogenesis GTPase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024956|gb|ABS22726.1| GTP-binding protein HSR1-related [Bacillus cytotoxicus NVH 391-98]
          Length = 287

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|256810103|ref|YP_003127472.1| GTP-binding protein HSR1-related [Methanocaldococcus fervens AG86]
 gi|256793303|gb|ACV23972.1| GTP-binding protein HSR1-related [Methanocaldococcus fervens AG86]
          Length = 367

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L E+ +   K+ I+G+ N GKSS+ NAL  K  A+   + G T+    + L      +K+
Sbjct: 98  LKEMGKKEGKVGIVGYPNVGKSSIINALTGKRKALTGSVAGLTKGEQWVRLTKN---IKL 154

Query: 272 SDTAGI---RETDDIV 284
            DT G+   R+ DD+V
Sbjct: 155 MDTPGVLEMRDEDDLV 170


>gi|198275301|ref|ZP_03207832.1| hypothetical protein BACPLE_01460 [Bacteroides plebeius DSM 17135]
 gi|198271884|gb|EDY96154.1| hypothetical protein BACPLE_01460 [Bacteroides plebeius DSM 17135]
          Length = 203

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 225 LGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           +G SN GKSSL N L K   +A+ +  PG T  +    ++ E YLV +      +    +
Sbjct: 29  IGRSNVGKSSLINMLTKNPKLAMTSATPGKTLLINHFLINKEWYLVDLPGYGYAQRGKKM 88

Query: 284 VEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI 325
           +EK  + I+   LE E    + +L  I+S+ E   P+ ID  FI
Sbjct: 89  MEKIQKLIEYYVLEREQMTCLFVL--IDSRLE---PQRIDLEFI 127


>gi|169342230|ref|ZP_02863313.1| GTP-binding protein [Clostridium perfringens C str. JGS1495]
 gi|169299714|gb|EDS81771.1| GTP-binding protein [Clostridium perfringens C str. JGS1495]
          Length = 440

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 3/64 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L   G +V + DTAG  +
Sbjct: 15  ISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFV-DTAGFDD 73

Query: 280 TDDI 283
             +I
Sbjct: 74  EGEI 77


>gi|325268711|ref|ZP_08135340.1| GTP-binding protein Era [Prevotella multiformis DSM 16608]
 gi|324988955|gb|EGC20909.1| GTP-binding protein Era [Prevotella multiformis DSM 16608]
          Length = 293

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ E   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTEDAQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  ++ +   + +AD++L + ++    E    KN+DF+
Sbjct: 69  MQEMMLQFSESALADADVLLYVTDVIENPE----KNMDFL 104


>gi|308161288|gb|EFO63741.1| Nucleolar GTPase [Giardia lamblia P15]
          Length = 541

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R      ++G  N GKSS+ N+L+ ++   V  IPG T+ +  I +DL    ++I D+ 
Sbjct: 277 MRTKIVAAVVGIPNVGKSSIINSLSSRNAVGVAPIPGYTKKISEIHIDLR---LRILDSP 333

Query: 276 GI 277
           G+
Sbjct: 334 GV 335


>gi|297243339|ref|ZP_06927272.1| GTPase [Gardnerella vaginalis AMD]
 gi|296888586|gb|EFH27325.1| GTPase [Gardnerella vaginalis AMD]
          Length = 347

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   +  +   + + DT G
Sbjct: 38  RSGF-VAVVGRPNVGKSTLMNALIGTQIAIASSRPETTRKAIRGIVTTDNAQMVLVDTPG 96

Query: 277 I 277
           I
Sbjct: 97  I 97


>gi|222099617|ref|YP_002534185.1| Iron(II) transport protein B [Thermotoga neapolitana DSM 4359]
 gi|221572007|gb|ACM22819.1| Iron(II) transport protein B [Thermotoga neapolitana DSM 4359]
          Length = 665

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 27/160 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ + G  N GK+SLFNAL       V + PG T +         GY + + D  G    
Sbjct: 14  KVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGSFTHRGYRINLVDLPGTYSL 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-INSKKE-------ISFPKNIDFIF-------- 324
                 E I R ++   +ADL++++ + +N ++        +   K +  +         
Sbjct: 73  GYSSIDEKIARDYILKGDADLVVVVADSVNPEQSLYLLLEILEMEKKVILVLTAIDEARK 132

Query: 325 IGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKI 358
           +G K D Y    E   HL       S+ TGEG+E+L ++I
Sbjct: 133 LGIKIDRY----ELQKHLGVPVVFTSAVTGEGIEKLKDRI 168


>gi|194041733|ref|XP_001927683.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Sus scrofa]
          Length = 332

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 19/146 (13%)

Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADL-DFSEEEDVQNFSSKEVLNDILFLKNDISSHIS 208
           +SG  + L+ + +    H+    + DL D  E++ +     +E L +++F       +I 
Sbjct: 62  LSGR-NPLFQETLGLKPHLLVLNKMDLADLKEQQKIMQHLEREGLKNVIFTNCVKDENIK 120

Query: 209 Q--GKLGEIIRNG----------YKIVILGHSNAGKSSLFNALAKKDV-----AIVTDIP 251
           Q   K+ E++ +           Y I+++G  N GKSSL NAL ++ +       V   P
Sbjct: 121 QIIPKVTELVGSSCRYHRGESVEYCIMVIGVPNVGKSSLINALRRQHLRKGKATKVGGEP 180

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGI 277
           G TR V++     E  L+ + DT G+
Sbjct: 181 GITRAVMSRVQVCERPLMFLLDTPGV 206


>gi|182625984|ref|ZP_02953748.1| GTP-binding protein [Clostridium perfringens D str. JGS1721]
 gi|177908791|gb|EDT71298.1| GTP-binding protein [Clostridium perfringens D str. JGS1721]
          Length = 440

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 3/64 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L   G +V + DTAG  +
Sbjct: 15  ISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFV-DTAGFDD 73

Query: 280 TDDI 283
             +I
Sbjct: 74  EGEI 77


>gi|154488911|ref|ZP_02029760.1| hypothetical protein BIFADO_02220 [Bifidobacterium adolescentis
           L2-32]
 gi|154083048|gb|EDN82093.1| hypothetical protein BIFADO_02220 [Bifidobacterium adolescentis
           L2-32]
          Length = 496

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 22/206 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G++NAGKSSL N L      +   +  T    +      +G L    DT G     
Sbjct: 278 VAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRAKAKDGRLYAYVDTVGFVRRL 337

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKE----ISFPKNIDFIFIGTK 328
                E  K T  EV +ADLI+ +          +I++  +    I   + I  I    K
Sbjct: 338 PTQLIEAFKSTLEEVADADLIVHVVDGSHPDPFSQIDAVNDVLSDIDGVETIPTIVAFNK 397

Query: 329 SDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           +D       E         H++S+F+GEG++ L   ++S+L      +   +P     L 
Sbjct: 398 ADRMDEAARERIEALMPEAHIVSAFSGEGVDALREHVESMLPTPNVHVEALLPYTAGSL- 456

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAE 407
            +S+   Y ++ ++  +D G+ + AE
Sbjct: 457 -MSRVREYGKVINVEYRDDGMMLEAE 481


>gi|149378199|ref|ZP_01895915.1| hypothetical protein MDG893_17872 [Marinobacter algicola DG893]
 gi|149357523|gb|EDM46029.1| hypothetical protein MDG893_17872 [Marinobacter algicola DG893]
          Length = 476

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETD 281
            ++GH N GKSS+   L++ D   +   PGTTR      L ++G  L  + DT G +   
Sbjct: 8   AVVGHPNKGKSSIVATLSQNDAIAIALEPGTTRKHQAYPLAVDGKTLYTLVDTPGFQRPR 67

Query: 282 DIVE 285
            ++E
Sbjct: 68  RVLE 71


>gi|167036173|ref|YP_001671404.1| HSR1-like GTP-binding protein [Pseudomonas putida GB-1]
 gi|166862661|gb|ABZ01069.1| GTP-binding protein HSR1-related [Pseudomonas putida GB-1]
          Length = 454

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L  +DV    V+  P TTR V    L ++G  L+++ DT G+
Sbjct: 6   KLAVVGHTNVGKTSLLRTLT-RDVGFGEVSHRPSTTRHVEGARLSVDGEPLLELYDTPGL 64


>gi|111115476|ref|YP_710094.1| ribosomal biogenesis GTPase [Borrelia afzelii PKo]
 gi|110890750|gb|ABH01918.1| hypothetical protein BAPKO_0687 [Borrelia afzelii PKo]
          Length = 268

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKSS+ N L+ K  A V + PG T+++  + ++ E   + + D  GI   
Sbjct: 108 KVLIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKINEE---INLFDMPGILWH 164

Query: 281 DDIVEKEGIKRTFLE------VENADLILLLKEI 308
           + + +    K   L+      V+N DL L L EI
Sbjct: 165 NLVDQSIAKKLAILDMIKNEIVDNTDLALYLLEI 198


>gi|26553493|ref|NP_757427.1| GTPase EngB [Mycoplasma penetrans HF-2]
 gi|81748121|sp|Q8EX09|ENGB_MYCPE RecName: Full=Probable GTP-binding protein EngB
 gi|26453499|dbj|BAC43831.1| predicted GTP-binding protein [Mycoplasma penetrans HF-2]
          Length = 186

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 6/52 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID------LDLEGY 267
           I  +G SN GKSSL NALA   +A  ++ PG T+     D      +DL GY
Sbjct: 22  ICFIGRSNVGKSSLINALANAKIAKTSNTPGRTQLANFYDFDKFRLIDLPGY 73


>gi|332286328|ref|YP_004418239.1| hypothetical protein PT7_3075 [Pusillimonas sp. T7-7]
 gi|330430281|gb|AEC21615.1| hypothetical protein PT7_3075 [Pusillimonas sp. T7-7]
          Length = 461

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIR 278
           ++ ++GH+N GK+SL   L +      V D PGTTR V    L  +G  +V++ DT G+ 
Sbjct: 9   RLAVVGHTNTGKTSLLRTLTRDTGFGQVDDSPGTTRHVEGARLLADGVVMVELYDTPGME 68

Query: 279 E 279
           +
Sbjct: 69  D 69


>gi|328957108|ref|YP_004374494.1| GTP-binding protein YqeH [Carnobacterium sp. 17-4]
 gi|328673432|gb|AEB29478.1| GTP-binding protein YqeH [Carnobacterium sp. 17-4]
          Length = 377

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 19/152 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+L N + K     +D+   +  PGTT D + I LD    L+  
Sbjct: 169 RKGRDVFVVGVTNVGKSTLINQIIKSTAGVQDLITTSQFPGTTLDRIEIPLDDGKNLI-- 226

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFI------ 323
            DT GI     +    G K   L     ++  ++ ++N  + + F      D++      
Sbjct: 227 -DTPGIIHRHQMAHVLGDKDLKLIAPKKEIKPIVYQLNEGQTLFFGGVARFDYLKGARHS 285

Query: 324 ---FIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
              F+    +++ T  E+ D L     G+ L+
Sbjct: 286 FTCFVSNDLNIHRTKLEKADELYQKQVGKLLQ 317


>gi|312898794|ref|ZP_07758182.1| GTP-binding protein Era [Megasphaera micronuciformis F0359]
 gi|310619956|gb|EFQ03528.1| GTP-binding protein Era [Megasphaera micronuciformis F0359]
          Length = 300

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLV 269
           K+ +  ++G+ + ++G  N GKS+L N + ++ V IV+D   TTR+ +L I  D E  ++
Sbjct: 2   KMKDQFKSGF-VAVVGRPNVGKSTLINRIIRQKVTIVSDKAQTTRNKILCIHTDDECQII 60

Query: 270 KISDTAGIRE 279
            + DT GI +
Sbjct: 61  FL-DTPGIHK 69


>gi|228909528|ref|ZP_04073352.1| hypothetical protein bthur0013_36800 [Bacillus thuringiensis IBL
           200]
 gi|228850119|gb|EEM94949.1| hypothetical protein bthur0013_36800 [Bacillus thuringiensis IBL
           200]
          Length = 424

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 2/102 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320
           +          + T  E   AD+IL + + +    I + K +
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVILHVVDSSDPNYIGYEKTV 297


>gi|229031468|ref|ZP_04187468.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1271]
 gi|228729757|gb|EEL80737.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1271]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|169837542|ref|ZP_02870730.1| small GTP-binding protein [candidate division TM7 single-cell
           isolate TM7a]
          Length = 106

 Score = 38.9 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 204 SSHISQGKLGEIIRNGY------KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           +S +S   L   I NG        + ++G +N GKSSLFN + +   AIV    GTTRD
Sbjct: 30  ASDLSIATLAHGIINGLVASKLPTVALIGQANVGKSSLFNRMVRAQQAIVAREAGTTRD 88


>gi|163941576|ref|YP_001646460.1| ribosomal biogenesis GTPase [Bacillus weihenstephanensis KBAB4]
 gi|229168577|ref|ZP_04296300.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH621]
 gi|163863773|gb|ABY44832.1| GTP-binding protein HSR1-related [Bacillus weihenstephanensis
           KBAB4]
 gi|228614983|gb|EEK72085.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH621]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|123441364|ref|YP_001005351.1| GTP-binding protein Era [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332162690|ref|YP_004299267.1| GTP-binding protein Era [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|189037685|sp|A1JKK4|ERA_YERE8 RecName: Full=GTPase Era
 gi|122088325|emb|CAL11116.1| putative GTP-binding protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318606795|emb|CBY28293.1| GTP-binding protein Era [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325666920|gb|ADZ43564.1| GTP-binding protein Era [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330860318|emb|CBX70632.1| GTP-binding protein era homolog [Yersinia enterocolitica W22703]
          Length = 303

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 37/193 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  + + +  EG Y     DT G+   
Sbjct: 12  IAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRI-MGIHTEGPYQAIYVDTPGLH-- 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I EK  I R             L    +   I   + + F+  GT       +T + +
Sbjct: 69  --IEEKRAINR-------------LMNRAASSSIGDVELVIFVVEGT------NWTADDE 107

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++         L  INK+ ++ ++K K LP        H+  LSQ + +L++  ++ E
Sbjct: 108 MVVNKLRSLQCPVLLAINKVDNV-TDKTKLLP--------HIQFLSQQMNFLDVVPISAE 158

Query: 398 KDCGLDIIAENLR 410
           K   +D IA  +R
Sbjct: 159 KGMNVDTIASIVR 171


>gi|56751355|ref|YP_172056.1| GTP-binding protein Era [Synechococcus elongatus PCC 6301]
 gi|81298971|ref|YP_399179.1| GTP-binding protein Era [Synechococcus elongatus PCC 7942]
 gi|56686314|dbj|BAD79536.1| GTP-binding protein ERA homolog [Synechococcus elongatus PCC 6301]
 gi|81167852|gb|ABB56192.1| GTP-binding protein Era [Synechococcus elongatus PCC 7942]
          Length = 311

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L  + +AI + +  TTR+ L   L  +   +   DT G
Sbjct: 16  RSGF-VALIGRPNVGKSTLMNHLVGQKIAITSPVAQTTRNRLRGVLTTDQVQIVFVDTPG 74

Query: 277 I 277
           I
Sbjct: 75  I 75


>gi|312134775|ref|YP_004002113.1| ribosome biogenesis gtp-binding protein ysxc [Caldicellulosiruptor
           owensensis OL]
 gi|311774826|gb|ADQ04313.1| ribosome biogenesis GTP-binding protein YsxC [Caldicellulosiruptor
           owensensis OL]
          Length = 204

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV--LTID-----LDLEGY 267
           + I G SN GKSS  NA+ K  +A V   PG TR +    ID     +DL GY
Sbjct: 28  MCICGRSNVGKSSFINAVFKDKLAKVGSTPGKTRTINFFNIDNKFRVVDLPGY 80


>gi|283783324|ref|YP_003374078.1| GTP-binding protein Era [Gardnerella vaginalis 409-05]
 gi|298252737|ref|ZP_06976531.1| GTPase [Gardnerella vaginalis 5-1]
 gi|283442229|gb|ADB14695.1| GTP-binding protein Era [Gardnerella vaginalis 409-05]
 gi|297533101|gb|EFH71985.1| GTPase [Gardnerella vaginalis 5-1]
          Length = 353

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   +  +   + + DT G
Sbjct: 44  RSGF-VAVVGRPNVGKSTLMNALIGTQIAIASSRPETTRKAIRGIVTTDNAQMVLVDTPG 102

Query: 277 I 277
           I
Sbjct: 103 I 103


>gi|241895551|ref|ZP_04782847.1| GTP-binding protein Era [Weissella paramesenteroides ATCC 33313]
 gi|241871129|gb|EER74880.1| GTP-binding protein Era [Weissella paramesenteroides ATCC 33313]
          Length = 302

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 23/156 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I ++G  N GKS+L N +  + +AI++    TTR+ +  I    EG ++   DT GI + 
Sbjct: 11  IALVGRPNVGKSTLLNKMIGEKIAIMSPKAQTTRNKIQGIYTTNEGQMI-FMDTPGIHKP 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFP-----KNIDFI 323
            + +    +K     +  +D++ LL   + +            KE + P       +D I
Sbjct: 70  HNSLGDFMVKTAMSALRESDMVWLLVNADQERGVGDDFIIKRLKESNTPVYLIINKVDLI 129

Query: 324 FIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELI 355
                 +  + Y+ + D      IS+ TGEG+ EL+
Sbjct: 130 NRAEVLNQIADYSAQMDFAEIFPISALTGEGVPELL 165


>gi|229013021|ref|ZP_04170186.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides DSM
           2048]
 gi|228748275|gb|EEL98135.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides DSM
           2048]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|6655023|gb|AAD02940.2| GTP-binding protein Era [Bradyrhizobium japonicum]
          Length = 309

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 86/202 (42%), Gaps = 36/202 (17%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           + G+     R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +     
Sbjct: 5   ASGEAPAATRCGF-VALIGAPNVGKSTLVNALVGAKVTIVSRKVQTTRALIRGIVIENNA 63

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----N 319
            + + DT GI      +++  +   +    +ADL+ +L +    I+ + E    K    N
Sbjct: 64  QIILVDTPGIFSPKRRLDRAMVSTAWSGAHDADLVCVLLDAKTGIDEEAEAILAKAASVN 123

Query: 320 IDFIFIGTKSDLYS---------------TYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            D I +  K DL                  + + +  +I++ +G+G+++L    +S L+ 
Sbjct: 124 HDKILVINKVDLVQREKLLALAQAANERMPFAKTF--MIAAISGDGVDDL----RSTLAE 177

Query: 365 KFKKLPFSIPSHK------RHL 380
                PF  P  +      RHL
Sbjct: 178 MVPPGPFLYPEDQMSDAPMRHL 199


>gi|78213819|ref|YP_382598.1| putative GTP-binding protein, transporter associated [Synechococcus
           sp. CC9605]
 gi|78198278|gb|ABB36043.1| putative GTP-binding protein, transporter associated [Synechococcus
           sp. CC9605]
          Length = 558

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 14/137 (10%)

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+D +  S +  +  +L  +  + SH S  +L +  R   ++ ++G++NAGKSSL NAL 
Sbjct: 335 EKDRRAISRR--IERLLRDQRQLQSHRS--RLRDQRRGLPRVALVGYTNAGKSSLLNALC 390

Query: 241 KK---DVAIVTDIPGTTRDVLTIDLDLEGYLVK-----ISDTAG-IRETDDIVEKEGIKR 291
            K   D  +  +    T D  T  LDL     +     ++DT G IR+    +  E  + 
Sbjct: 391 GKRASDRVLAENKLFATLDPTTRKLDLPCPGTRPQRLLLTDTVGFIRDLPAPL-VEAFRA 449

Query: 292 TFLEVENADLILLLKEI 308
           T  E  +AD++LL+ ++
Sbjct: 450 TLEEALDADVLLLVVDL 466


>gi|28899345|ref|NP_798950.1| GTP-binding protein Era [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839957|ref|ZP_01992624.1| GTP-binding protein Era [Vibrio parahaemolyticus AQ3810]
 gi|260365942|ref|ZP_05778432.1| GTP-binding protein Era [Vibrio parahaemolyticus K5030]
 gi|260878964|ref|ZP_05891319.1| GTP-binding protein Era [Vibrio parahaemolyticus AN-5034]
 gi|260898319|ref|ZP_05906815.1| GTP-binding protein Era [Vibrio parahaemolyticus Peru-466]
 gi|260899640|ref|ZP_05908035.1| GTP-binding protein Era [Vibrio parahaemolyticus AQ4037]
 gi|31340053|sp|Q87LP0|ERA_VIBPA RecName: Full=GTPase Era
 gi|28807581|dbj|BAC60834.1| GTP-binding protein Era [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746516|gb|EDM57505.1| GTP-binding protein Era [Vibrio parahaemolyticus AQ3810]
 gi|308085246|gb|EFO34941.1| GTP-binding protein Era [Vibrio parahaemolyticus Peru-466]
 gi|308090470|gb|EFO40165.1| GTP-binding protein Era [Vibrio parahaemolyticus AN-5034]
 gi|308110555|gb|EFO48095.1| GTP-binding protein Era [Vibrio parahaemolyticus AQ4037]
 gi|308113214|gb|EFO50754.1| GTP-binding protein Era [Vibrio parahaemolyticus K5030]
          Length = 320

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  ++ +D D + Y     DT G+   
Sbjct: 29  IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGD-YQAIYVDTPGLH-- 85

Query: 281 DDIVEKEGIKRTFLEVENADL 301
             I EK  I R      N+ L
Sbjct: 86  --IEEKRAINRLMNRAANSSL 104


>gi|282899427|ref|ZP_06307394.1| Small GTP-binding protein domain protein [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195691|gb|EFA70621.1| Small GTP-binding protein domain protein [Cylindrospermopsis
           raciborskii CS-505]
          Length = 504

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 40/223 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK--ISDT 274
           R   ++V+ G  +AGK+SL NA+  + V  V    GTT+   T  L L+G   K  I+DT
Sbjct: 127 RGEIQVVVFGTGSAGKTSLVNAIMGRIVGEVNAPMGTTKVGETYCLRLKGLERKILITDT 186

Query: 275 AGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-KNIDFI-----FIGT 327
            GI E      E+E + R       ADL+L + + + ++    P + +  I      +  
Sbjct: 187 PGILEAGIPGTEREHLARAL--ATEADLLLFVVDNDLRRSEYEPLRGLAEIGKRSLLVLN 244

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEELI--NKIKSILSNK----------FKKLPFSIPS 375
           K+DLY    E+ D ++     E +++ I  N + +I +N           F+  P  +P 
Sbjct: 245 KTDLYK--DEDKDAILIKLR-ERVKDYISHNDVVAIAANPQAVELEGGEIFQPEPEIVPL 301

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
            KR             +A++   + G D+IA+N+ L S+ LG+
Sbjct: 302 LKR-------------IAAVLRAE-GEDLIADNILLQSLRLGE 330


>gi|229134646|ref|ZP_04263455.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
           BDRD-ST196]
 gi|228648692|gb|EEL04718.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
           BDRD-ST196]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|226326646|ref|ZP_03802164.1| hypothetical protein PROPEN_00496 [Proteus penneri ATCC 35198]
 gi|225204867|gb|EEG87221.1| hypothetical protein PROPEN_00496 [Proteus penneri ATCC 35198]
          Length = 428

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 86/213 (40%), Gaps = 41/213 (19%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           ++ IL     +     QG+      +   + ++G++NAGKSSLFN +   DV     +  
Sbjct: 172 ISQILMRLGRVERQREQGRQARSKADIPTLSLVGYTNAGKSSLFNHITCSDVYAADQLFA 231

Query: 253 TTRDVL-TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL------ 303
           T    L  I ++  G +V ++DT G IR    D+V     K T  E   A L+L      
Sbjct: 232 TLDPTLRRIQVEDVGTVV-LADTVGFIRHLPHDLV--AAFKATLQETREATLLLHVIDAA 288

Query: 304 -------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH--------- 341
                        +L+EI++++       I  + +  K DL   +T   D          
Sbjct: 289 DSRFEENIHAVESVLEEIDAQE-------IPTLHVMNKIDLLEDFTPRIDRNEENLPVRV 341

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            +S+ TGEG+  L   +   LS +       +P
Sbjct: 342 WVSAQTGEGIPLLYQALTERLSGEIAHFELRLP 374


>gi|194228582|ref|XP_001495993.2| PREDICTED: similar to Guanine nucleotide binding protein-like 3
           (nucleolar)-like isoform 1 [Equus caballus]
          Length = 575

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 238 RLGEV-RTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVYLD---KFIR 293

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 294 LLDAPGI 300


>gi|119897934|ref|YP_933147.1| GTP-binding protein Era [Azoarcus sp. BH72]
 gi|119670347|emb|CAL94260.1| probable GTP-binding protein [Azoarcus sp. BH72]
          Length = 304

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 4/107 (3%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           +I   +   K G   R G+ + I+G  N GKS+L N L  + ++IV+    TTR  +T  
Sbjct: 2   NIEEAVPSAKPG--FRTGF-VAIVGRPNVGKSTLLNRLIGQKISIVSSKAQTTRHRVTGI 58

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV-ENADLILLLKE 307
           L  EG      DT G +          + RT  +V  + DL+  + E
Sbjct: 59  LTNEGAQFVFVDTPGFQTQHRNALNRSMNRTVSQVLGDVDLVFFVIE 105


>gi|27380171|ref|NP_771700.1| GTP-binding protein Era [Bradyrhizobium japonicum USDA 110]
 gi|30178619|sp|O69162|ERA_BRAJA RecName: Full=GTPase Era
 gi|27353325|dbj|BAC50325.1| GTP-binding protein Era [Bradyrhizobium japonicum USDA 110]
          Length = 308

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 86/202 (42%), Gaps = 36/202 (17%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           + G+     R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +     
Sbjct: 5   ASGEAPAATRCGF-VALIGAPNVGKSTLVNALVGAKVTIVSRKVQTTRALIRGIVIENNA 63

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----N 319
            + + DT GI      +++  +   +    +ADL+ +L +    I+ + E    K    N
Sbjct: 64  QIILVDTPGIFSPKRRLDRAMVSTAWSGAHDADLVCVLLDAKTGIDEEAEAILAKAASVN 123

Query: 320 IDFIFIGTKSDLYS---------------TYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            D I +  K DL                  + + +  +I++ +G+G+++L    +S L+ 
Sbjct: 124 HDKILVINKVDLVQREKLLALAQAANERMPFAKTF--MIAAISGDGVDDL----RSTLAE 177

Query: 365 KFKKLPFSIPSHK------RHL 380
                PF  P  +      RHL
Sbjct: 178 MVPPGPFLYPEDQMSDAPMRHL 199


>gi|83282167|ref|XP_729651.1| autoantigen ngp-1 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23488072|gb|EAA21216.1| autoantigen ngp-1 [Plasmodium yoelii yoelii]
          Length = 551

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 17/100 (17%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           F KN    HI  G             ++G+ N GKS++ N+L KK V I   IPG T+  
Sbjct: 305 FFKNMKKKHIHIG-------------LIGYPNVGKSAVINSLKKKVVCISACIPGQTKYW 351

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
             I L  + YL+   D  GI    DI + + I R  + +E
Sbjct: 352 QFIKLTNKIYLI---DCPGIVPY-DIEDSDKILRCTMRLE 387


>gi|260775207|ref|ZP_05884105.1| GTP-binding protein Era [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608908|gb|EEX35070.1| GTP-binding protein Era [Vibrio coralliilyticus ATCC BAA-450]
          Length = 324

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N +  + ++I +  P TTR  + + +D EG Y     DT G+   
Sbjct: 33  VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRI-MGVDTEGDYQAIYVDTPGLH-- 89

Query: 281 DDIVEKEGIKRTFLEVENADL 301
             I EK  I R      N+ L
Sbjct: 90  --IEEKRAINRLMNRAANSSL 108


>gi|118602618|ref|YP_903833.1| GTP-binding protein Era [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567557|gb|ABL02362.1| GTP-binding protein Era [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 308

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + ++I +  P TTR  + +    + Y +   DT GI   +
Sbjct: 22  IAVVGRPNVGKSTLVNELIGQKLSITSHRPQTTRHRIHVIDTTDDYQMVFVDTPGIHMGN 81

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI 308
              +     K     + N D+IL L E+
Sbjct: 82  CKAINSYMNKAASSTIANVDVILWLTEV 109


>gi|50122853|ref|YP_052020.1| putative GTPase HflX [Pectobacterium atrosepticum SCRI1043]
 gi|49613379|emb|CAG76830.1| putative GTP-binding phage-related protein [Pectobacterium
           atrosepticum SCRI1043]
          Length = 426

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 84/215 (39%), Gaps = 33/215 (15%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           ++ IL     +     QG+   +  +   + ++G++NAGKS+LFN +    V +   +  
Sbjct: 171 ISQILLRLERVEKQREQGRRSRVRADVPTVSLVGYTNAGKSTLFNKITSAGVYVADQLFA 230

Query: 253 TTRDVL-TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           T    L  I +D  G  V ++DT G IR+   D+V     K T  E   A L+L    + 
Sbjct: 231 TLDPTLRRIQVDDVGDTV-LADTVGFIRQLPHDLV--AAFKATLQETRQASLLL---HVV 284

Query: 310 SKKEISFPKNIDFI---------------FIGTKSDLYSTYTEEYDH---------LISS 345
              +    +NID +                +  K D+   +    D           +S+
Sbjct: 285 DAADPRLDENIDAVNDVLAEIEADEIPALLVMNKIDMLDDFVPRIDRNEENLPIRVWLSA 344

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            TG+G+  L   +   LS +  +    +P     L
Sbjct: 345 QTGDGIPLLFQALTERLSGEIAQYTLHLPPQAGRL 379


>gi|27364935|ref|NP_760463.1| GTPase Era [Vibrio vulnificus CMCP6]
 gi|37681014|ref|NP_935623.1| GTP-binding protein Era [Vibrio vulnificus YJ016]
 gi|320155321|ref|YP_004187700.1| GTP-binding protein Era [Vibrio vulnificus MO6-24/O]
 gi|31340056|sp|Q8DC75|ERA_VIBVU RecName: Full=GTPase Era
 gi|61212428|sp|Q7MHN9|ERA_VIBVY RecName: Full=GTPase Era
 gi|27361081|gb|AAO09990.1| GTP-binding protein Era [Vibrio vulnificus CMCP6]
 gi|37199764|dbj|BAC95594.1| GTP-binding protein Era [Vibrio vulnificus YJ016]
 gi|319930633|gb|ADV85497.1| GTP-binding protein Era [Vibrio vulnificus MO6-24/O]
          Length = 320

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  ++ +D D + Y     DT G+   
Sbjct: 29  IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGD-YQAIYVDTPGLH-- 85

Query: 281 DDIVEKEGIKRTFLEVENADL 301
             I EK  I R      N+ L
Sbjct: 86  --IEEKRAINRLMNRAANSSL 104


>gi|222823763|ref|YP_002575337.1| GTP-binding protein Era [Campylobacter lari RM2100]
 gi|254783290|sp|B9KGA1|ERA_CAMLR RecName: Full=GTPase Era
 gi|222538985|gb|ACM64086.1| GTP-binding protein Era [Campylobacter lari RM2100]
          Length = 290

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKSS+ N+L ++ +A+V+     TR  +   +  E   V   DT 
Sbjct: 1   MKSGF-VSIVGRTNAGKSSILNSLLEEKIAMVSHKQNATRRKINAIIMHEKNQVIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           G+  +   + +  I      + + D+IL +  I
Sbjct: 60  GLHASSKAINQLMIDLAIKSIADCDVILFVASI 92


>gi|332975677|gb|EGK12563.1| GTP-binding protein [Desmospora sp. 8437]
          Length = 367

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 8/77 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + + G +N GKS+L N L K     ++V   +  PGTT D  TI + LEG  
Sbjct: 156 ETCREGRDVFVTGTANVGKSTLINRLLKEFGSGEEVITTSPYPGTTLD--TIHIPLEGGR 213

Query: 269 VKISDTAGIRETDDIVE 285
            ++ D  GI   D + E
Sbjct: 214 -ELVDMPGIVRRDRMSE 229


>gi|330719082|ref|ZP_08313682.1| GTP-binding protein YlqF [Leuconostoc fallax KCTC 3537]
          Length = 283

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           LK   ++ + +G + + IR     +I G  N GKS+L N L KK+VA   D PG T+ +
Sbjct: 106 LKAKKTAQLEKGIVDQPIRA----LIAGIPNVGKSTLLNHLIKKNVAPTADRPGVTKKI 160


>gi|325123515|gb|ADY83038.1| GTP-binding protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 447

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 29/189 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           + ++G++NAGKS+LFN LA  DV     +  T    L  +D D  G +V ++DT G +R 
Sbjct: 202 VSLVGYTNAGKSTLFNILANSDVYAADQLFATLDPTLRRLDWDGIGTVV-LADTVGFVRN 260

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYT 336
              D+V  E  K T  E   A L+L + + +S   +   + ++ +   IG  + +   Y 
Sbjct: 261 LQHDLV--ESFKATLEETLEATLLLHVIDSSSHDMLDQIEAVEGVLKDIGADAPVLRVYN 318

Query: 337 ------EEYD------HL-----ISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSH-- 376
                 EE        H+     +S+ +G+GLE L   ++  L  + +K    + P++  
Sbjct: 319 KIDLSGEEAKIIYAEPHVPDRVYVSAHSGQGLELLQKAVQECLMGQIQKFSLVLKPAYGK 378

Query: 377 -KRHLYHLS 384
            +  LY L+
Sbjct: 379 LRTQLYALN 387


>gi|323499982|ref|ZP_08104938.1| GTPase Era [Vibrio sinaloensis DSM 21326]
 gi|323314948|gb|EGA68003.1| GTPase Era [Vibrio sinaloensis DSM 21326]
          Length = 325

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N +  + ++I +  P TTR  + + +D EG Y     DT G+   
Sbjct: 34  VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRI-MGVDTEGDYQAIYVDTPGLH-- 90

Query: 281 DDIVEKEGIKRTFLEVENADL 301
             I EK  I R      N+ L
Sbjct: 91  --IEEKRAINRLMNRAANSSL 109


>gi|307942253|ref|ZP_07657604.1| GTP-binding protein HflX [Roseibium sp. TrichSKD4]
 gi|307774539|gb|EFO33749.1| GTP-binding protein HflX [Roseibium sp. TrichSKD4]
          Length = 463

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 39/225 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN + + +V    D+   T D     + L  G  + +SDT G    
Sbjct: 237 VALVGYTNAGKSTLFNRMTESNV-FAKDLLFATLDPTLRKIRLPHGREIILSDTVGFISD 295

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI------------------------NSKKEISF 316
                    + T  EV  ADLIL +++I                        ++   I  
Sbjct: 296 LPTHLVAAFRATLEEVLEADLILHVRDISHPDSEAQCEDVKKTLVDLGVDGSHAAPVIEV 355

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK----FKKLPFS 372
              ID +    +  L     EE    +S+ TGEG+  L  +I + ++        KLP  
Sbjct: 356 WNKIDALDPAYREKLLEDAAEEGPVSLSALTGEGVTSLYGRIDAFMAQHDDLFTVKLPVF 415

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
             +    LY LS+ +         E++ G + I   +R+     G
Sbjct: 416 EGALLAQLYQLSEVM---------EREDGEEFITAEVRVTDKQRG 451


>gi|281342312|gb|EFB17896.1| hypothetical protein PANDA_019972 [Ailuropoda melanoleuca]
          Length = 528

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 219 RLGEV-RTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGITKFMQEVYLD---KFIR 274

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 275 LLDAPGI 281


>gi|254819385|ref|ZP_05224386.1| GTP-binding protein Era [Mycobacterium intracellulare ATCC 13950]
          Length = 299

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    VAI +  P TTR  +   +  + + + + DT G
Sbjct: 5   RSGF-VCLVGRPNTGKSTLTNALVGTKVAITSKRPQTTRHTIRGIVHRDDFQIILVDTPG 63

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ K   + ++ T+ EV+
Sbjct: 64  LHRPRTLLGKRLNDLVRDTYAEVD 87


>gi|229134499|ref|ZP_04263312.1| hypothetical protein bcere0014_34100 [Bacillus cereus BDRD-ST196]
 gi|228649120|gb|EEL05142.1| hypothetical protein bcere0014_34100 [Bacillus cereus BDRD-ST196]
          Length = 423

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVALIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|23099103|ref|NP_692569.1| GTP-binding protein protease modulator [Oceanobacillus iheyensis
           HTE831]
 gi|22777331|dbj|BAC13604.1| GTP-binding protein protease modulator [Oceanobacillus iheyensis
           HTE831]
          Length = 413

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 44/177 (24%)

Query: 220 YKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++I I+G++NAGKS+LFN L K     +D    T  P T R  L  D+     +  I+DT
Sbjct: 196 FQIAIVGYTNAGKSTLFNRLTKSSSLEEDQLFATLDPLTRRVKLPSDM-----ICLITDT 250

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEIS 315
            G  +          K T  EV  AD +L                   LL+E+N+     
Sbjct: 251 VGFIQDLPTALIAAFKSTLEEVAEADFLLHVVDASDSDLNQQQKTVQKLLEELNA----- 305

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKF 366
              +I  + +  K DL     E++      + L+S++    L+ ++ +++SIL  ++
Sbjct: 306 --NHIPMLTVYNKKDLIQ--GEDFIANQFPNVLVSAYDENDLQHMMLQVESILKEEW 358


>gi|88858645|ref|ZP_01133286.1| GTP-binding protein [Pseudoalteromonas tunicata D2]
 gi|88818871|gb|EAR28685.1| GTP-binding protein [Pseudoalteromonas tunicata D2]
          Length = 219

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 7/56 (12%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-------DLEGY 267
           G ++   G SNAGKSS  N L  K +A  +  PG T+ +   DL       DL GY
Sbjct: 28  GIEVAFAGRSNAGKSSSLNTLTDKKIAKTSKTPGRTQLINAFDLGDNMRLIDLPGY 83


>gi|330812405|ref|YP_004356867.1| hypothetical protein PSEBR_a5360 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380513|gb|AEA71863.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 453

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGI 277
           K+ ++GH+N GK+SL   L  +DV    V+  P TTR V    L ++G  L+++ DT G+
Sbjct: 5   KLAVVGHTNVGKTSLLRTLT-RDVGFGEVSHRPSTTRHVEGARLSVDGEALLELYDTPGL 63


>gi|309389591|gb|ADO77471.1| ferrous iron transport protein B [Halanaerobium praevalens DSM
           2228]
          Length = 620

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 7/83 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KIV+ G+ N GKS  FN L    V+ V++ PGTT D+ +  +  +     + DT G+   
Sbjct: 18  KIVLAGNPNVGKSIFFNYLTGIYVS-VSNYPGTTLDISSGKMGDDA----VYDTPGVYGV 72

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
             I ++E + R F  + +AD+I+
Sbjct: 73  GSINDEERVARDF--IMSADIII 93


>gi|308069928|ref|YP_003871533.1| GTP-binding protein [Paenibacillus polymyxa E681]
 gi|305859207|gb|ADM70995.1| GTP-binding protein, era-like (Bex protein) [Paenibacillus polymyxa
           E681]
          Length = 300

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I+G  N GKS+L N +  + +AI++D P TTR+ +      E   +   DT GI +
Sbjct: 11  VAIVGRPNVGKSTLMNHVIGQKIAIMSDKPQTTRNKIHGVFTTEDTQIVFLDTPGIHK 68


>gi|282900463|ref|ZP_06308412.1| Small GTP-binding protein [Cylindrospermopsis raciborskii CS-505]
 gi|281194656|gb|EFA69604.1| Small GTP-binding protein [Cylindrospermopsis raciborskii CS-505]
          Length = 308

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ I I+G  N GKS+L N L  + +AI + +  TTR+ L   L  E   +   DT G
Sbjct: 15  KSGF-IGIIGRPNVGKSTLMNQLIGQKIAITSPVAQTTRNRLRGILTREKAQLIFVDTPG 73

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +    + +  ++   + + + D++L +
Sbjct: 74  IHKPHHPLGEVLVQNAKIAITSVDVVLFV 102


>gi|269960404|ref|ZP_06174777.1| GTP-binding protein [Vibrio harveyi 1DA3]
 gi|269834831|gb|EEZ88917.1| GTP-binding protein [Vibrio harveyi 1DA3]
          Length = 320

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  ++ +D D + Y     DT G+   
Sbjct: 29  IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGD-YQAIYVDTPGLH-- 85

Query: 281 DDIVEKEGIKRTFLEVENADL 301
             I EK  I R      N+ L
Sbjct: 86  --IEEKRAINRLMNRAANSSL 104


>gi|217076238|ref|YP_002333954.1| GTP-binding proten HflX [Thermosipho africanus TCF52B]
 gi|217036091|gb|ACJ74613.1| GTP-binding proten HflX [Thermosipho africanus TCF52B]
          Length = 336

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 10/99 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           N YK+ I+G++NAGK++L + LAK+ +     + T +   +R VL       G     SD
Sbjct: 167 NIYKVSIVGYTNAGKTTLLSNLAKETLLSKNEMFTTLSPVSRRVLLPS----GRYAIFSD 222

Query: 274 TAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           T G IR    ++  E    T  E+  +DLI++L ++  K
Sbjct: 223 TVGFIRNLHPLI-IEAFHSTLEEINFSDLIIILVDVADK 260


>gi|194228580|ref|XP_001496011.2| PREDICTED: similar to Guanine nucleotide binding protein-like 3
           (nucleolar)-like isoform 2 [Equus caballus]
          Length = 582

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 245 RLGEV-RTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVYLD---KFIR 300

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 301 LLDAPGI 307


>gi|148269225|ref|YP_001243685.1| GTP-binding protein Era [Thermotoga petrophila RKU-1]
 gi|189037683|sp|A5IIT6|ERA_THEP1 RecName: Full=GTPase Era
 gi|147734769|gb|ABQ46109.1| GTP-binding protein Era [Thermotoga petrophila RKU-1]
          Length = 300

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDT 274
           I++G+ + + G  N GKS+  N +  + V IV+D P TTR+ +  I  D +  ++ + DT
Sbjct: 3   IKSGF-VALAGKPNVGKSTFINVVMGRKVVIVSDKPQTTRNRINCIYTDRDSQIIFV-DT 60

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +K     ++  DLIL +
Sbjct: 61  PGIHKPLHRLGEYMVKAAVQALKGVDLILFM 91


>gi|170719518|ref|YP_001747206.1| GTP-binding protein HSR1-related [Pseudomonas putida W619]
 gi|169757521|gb|ACA70837.1| GTP-binding protein HSR1-related [Pseudomonas putida W619]
          Length = 454

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L  +DV    V+  P TTR V    L ++G  L+++ DT G+
Sbjct: 6   KLAVVGHTNVGKTSLLRTLT-RDVGFGEVSHRPSTTRHVEGARLSVDGEPLLELYDTPGL 64


>gi|289662800|ref|ZP_06484381.1| GTP-binding protein Era [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 285

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGI 277
           ++G  N GKS+L NAL    V+IV++ P TTR  +L I    EG LV + DT G+
Sbjct: 1   MIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLV-LVDTPGL 54


>gi|228993078|ref|ZP_04153001.1| hypothetical protein bpmyx0001_38150 [Bacillus pseudomycoides DSM
           12442]
 gi|228999128|ref|ZP_04158710.1| hypothetical protein bmyco0003_36850 [Bacillus mycoides Rock3-17]
 gi|229006676|ref|ZP_04164310.1| hypothetical protein bmyco0002_35780 [Bacillus mycoides Rock1-4]
 gi|228754537|gb|EEM03948.1| hypothetical protein bmyco0002_35780 [Bacillus mycoides Rock1-4]
 gi|228760745|gb|EEM09709.1| hypothetical protein bmyco0003_36850 [Bacillus mycoides Rock3-17]
 gi|228766726|gb|EEM15366.1| hypothetical protein bpmyx0001_38150 [Bacillus pseudomycoides DSM
           12442]
          Length = 368

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 25/169 (14%)

Query: 203 ISSHISQG--KLGEII---RNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIP 251
           IS+   QG  +L E I   R G  + ++G +N GKS+  N + K      ++V   +  P
Sbjct: 139 ISAAKGQGIRELAEAIEQYRGGKDVYVVGCTNVGKSTFINRMIKEFSEETENVITTSHFP 198

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           GTT D++ I LD    L    DT GI     +    G +   L     ++  ++ ++N +
Sbjct: 199 GTTLDLIDIPLDETSSLY---DTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEE 255

Query: 312 KEISFP--KNIDFIFIGTKS---------DLYSTYTEEYDHLISSFTGE 349
           + + F      D+I  G ++          ++ T  E+ D L     GE
Sbjct: 256 QTLFFGGLARFDYISGGRRAFTCHLSNRLPIHRTKLEKADELYEKHAGE 304


>gi|229174504|ref|ZP_04302036.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus MM3]
 gi|228609064|gb|EEK66354.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus MM3]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|169829302|ref|YP_001699460.1| GTP-binding protein YqeH [Lysinibacillus sphaericus C3-41]
 gi|168993790|gb|ACA41330.1| Hypothetical yqeH protein [Lysinibacillus sphaericus C3-41]
          Length = 367

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 25/171 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+  N + K+     +V   +  PGTT D++ I LD    L   
Sbjct: 158 RQGQNVYVVGCTNVGKSTFINRIIKQATGEGEVITTSHFPGTTLDMIEIPLDDGSALF-- 215

Query: 272 SDTAGI------------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            DT GI             E   I+ K+ IK    + +NA   L +  +     I   ++
Sbjct: 216 -DTPGIINHHQMAHHIDSSELKYIMPKKEIKPKVYQ-QNAGQTLFIGALARFDFIQGDRS 273

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL----EELINKIKSILSNKF 366
              I +     ++ T  E+ D L +   G+ L     E I+++  ++ ++F
Sbjct: 274 AFTIHVANDLPIHRTKLEKADTLYTEHKGDLLAPPTAEFIDQLPPLVRHEF 324


>gi|168211868|ref|ZP_02637493.1| GTP-binding protein [Clostridium perfringens B str. ATCC 3626]
 gi|170710198|gb|EDT22380.1| GTP-binding protein [Clostridium perfringens B str. ATCC 3626]
          Length = 440

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 3/64 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L   G +V + DTAG  +
Sbjct: 15  ISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFV-DTAGFDD 73

Query: 280 TDDI 283
             +I
Sbjct: 74  EGEI 77


>gi|218961441|ref|YP_001741216.1| GTP-binding protein Era [Candidatus Cloacamonas acidaminovorans]
 gi|167730098|emb|CAO81010.1| GTP-binding protein Era [Candidatus Cloacamonas acidaminovorans]
          Length = 299

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + ++I +  P TTR  +    +   + +   DT G  +  
Sbjct: 17  VTIIGKPNTGKSTLMNLILGEKISITSPKPQTTRYAIKGIWNTSEHQIIFVDTPGYLKPR 76

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID 321
             ++++ +K     +++ DLI+ L +I+      FP   D
Sbjct: 77  YELQEKMLKIWHNALKDVDLIIFLTQID-----GFPTEYD 111


>gi|167630258|ref|YP_001680757.1| GTP-binding protein, putative [Heliobacterium modesticaldum Ice1]
 gi|167592998|gb|ABZ84746.1| GTP-binding protein, putative [Heliobacterium modesticaldum Ice1]
          Length = 283

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
             ++ +++G  N GKSSL N LA +   +  D PG TR    + +   G  +++ DT GI
Sbjct: 120 RAFRAMVVGIPNVGKSSLINRLAGRHRTVTADRPGVTRGPQWVRI---GQKLELLDTPGI 176


>gi|108761214|ref|YP_631233.1| putative GTP-binding protein YihA [Myxococcus xanthus DK 1622]
 gi|119369219|sp|Q1D7Z0|ENGB_MYXXD RecName: Full=Probable GTP-binding protein EngB
 gi|108465094|gb|ABF90279.1| putative GTP-binding protein YihA [Myxococcus xanthus DK 1622]
          Length = 206

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 5/61 (8%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLE----GYLVKISDTA 275
           ++  +G SN GKSS+ NAL  ++ +  V++ PG TR +   D+DLE     + ++++D  
Sbjct: 26  EVAFVGRSNVGKSSMINALTGRRKLVRVSNTPGRTRTLNFFDVDLERGGVRHQIRLADLP 85

Query: 276 G 276
           G
Sbjct: 86  G 86


>gi|71278353|ref|YP_267092.1| GTP-binding protein HflX [Colwellia psychrerythraea 34H]
 gi|71144093|gb|AAZ24566.1| GTP-binding protein HflX [Colwellia psychrerythraea 34H]
          Length = 428

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 6/104 (5%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE-T 280
           ++G++NAGKS+LFN L + DV     +  T    L  IDL   G ++ ++DT G IR   
Sbjct: 202 LVGYTNAGKSTLFNTLTQSDVYAADQLFATLDPTLRKIDLFGVGRVI-LADTVGFIRHLP 260

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
            D+V     K T  E   A+L+L + +I+  +     + ++++ 
Sbjct: 261 HDLV--AAFKATLTETREAELLLHVVDISDDRRSENIEQVEYVL 302


>gi|321315371|ref|YP_004207658.1| GTPase YlqF [Bacillus subtilis BSn5]
 gi|320021645|gb|ADV96631.1| GTPase YlqF [Bacillus subtilis BSn5]
          Length = 282

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     + +   G  +++ DT GI
Sbjct: 122 RALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGI 175


>gi|313501109|gb|ADR62475.1| GTP-binding protein, HSR1-related protein [Pseudomonas putida
           BIRD-1]
          Length = 454

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L  +DV    V+  P TTR V    L ++G  L+++ DT G+
Sbjct: 6   KLAVVGHTNVGKTSLLRTLT-RDVGFGEVSHRPSTTRHVEGARLSVDGEPLLELYDTPGL 64


>gi|300854481|ref|YP_003779465.1| putative GTP-binding protein [Clostridium ljungdahlii DSM 13528]
 gi|300434596|gb|ADK14363.1| predicted GTP-binding protein [Clostridium ljungdahlii DSM 13528]
          Length = 284

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 9/90 (10%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           S K +L+++L  K+D  ++  +G LG   R    ++++G  N GKSS  N +AK  +A  
Sbjct: 95  SIKPLLDELLKEKHDRMNN--KGILGITDR----VMVVGIPNVGKSSFINKMAKNSIAKT 148

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            D PG TR    I   L    +++ DT GI
Sbjct: 149 GDKPGVTRSKQWIKTKLG---IELMDTPGI 175


>gi|296242943|ref|YP_003650430.1| small GTP-binding protein [Thermosphaera aggregans DSM 11486]
 gi|296095527|gb|ADG91478.1| small GTP-binding protein [Thermosphaera aggregans DSM 11486]
          Length = 689

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSLF AL   DV ++ + PGTT + +   +  +G  +++ D  GI   
Sbjct: 4   RVALIGQPNVGKSSLFKALTGGDV-MIANWPGTTVERVEGVVKYKGREIRLIDLPGIYGF 62

Query: 281 DDIVEKEGIKRTFL 294
                +E + R ++
Sbjct: 63  SATTLEEKLSREYI 76


>gi|242399934|ref|YP_002995359.1| GTPase, MMR1/HSR1 family [Thermococcus sibiricus MM 739]
 gi|242266328|gb|ACS91010.1| GTPase, MMR1/HSR1 family [Thermococcus sibiricus MM 739]
          Length = 357

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++  K+V++G+ N GKS++ N L  K       IPG T+    I L  + ++V   D+ G
Sbjct: 105 KDKVKVVLVGYPNVGKSTIINVLKGKHAVGTAPIPGYTKGKQLIRLSKKIWVV---DSPG 161

Query: 277 IRETDDIVE 285
           +   DD  E
Sbjct: 162 VVPIDDFEE 170


>gi|168213397|ref|ZP_02639022.1| GTP-binding protein [Clostridium perfringens CPE str. F4969]
 gi|170715179|gb|EDT27361.1| GTP-binding protein [Clostridium perfringens CPE str. F4969]
          Length = 440

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 3/64 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279
           I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L   G +V + DTAG  +
Sbjct: 15  ISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFV-DTAGFDD 73

Query: 280 TDDI 283
             +I
Sbjct: 74  EGEI 77


>gi|169824673|ref|YP_001692284.1| ferrous iron transport protein B [Finegoldia magna ATCC 29328]
 gi|167831478|dbj|BAG08394.1| ferrous iron transport protein B [Finegoldia magna ATCC 29328]
          Length = 673

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I +LG  N+GKS+LFN L   +   V + PG T +    +   +     I D  G     
Sbjct: 6   IALLGQPNSGKSTLFNGLTGSNQH-VGNWPGKTVEKKEGEFSYKDTNYTIVDLPGTYGLS 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
              E+E I R ++E  N+DLI ++ +
Sbjct: 65  ANSEEEVITREYIETGNSDLIAIMAD 90


>gi|154249877|ref|YP_001410702.1| GTP-binding protein HSR1-related [Fervidobacterium nodosum Rt17-B1]
 gi|154153813|gb|ABS61045.1| GTP-binding protein HSR1-related [Fervidobacterium nodosum Rt17-B1]
          Length = 376

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 14/105 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +++LG +N GKSSL   L    V  V+  PGTT  ++   L      +K+ DT GI   D
Sbjct: 167 MLVLGVTNVGKSSLLKKLTNSKVT-VSPYPGTTIGIVKHKLK----NLKVYDTPGIIVND 221

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
            +++         + E    IL   E+N K    +P+ +  IFIG
Sbjct: 222 RMID-------LFDAECQAKILAKGEVNRKTFKPYPEEV--IFIG 257


>gi|26991810|ref|NP_747235.1| hypothetical protein PP_5134 [Pseudomonas putida KT2440]
 gi|24986923|gb|AAN70699.1|AE016713_5 conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 456

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L  +DV    V+  P TTR V    L ++G  L+++ DT G+
Sbjct: 8   KLAVVGHTNVGKTSLLRTLT-RDVGFGEVSHRPSTTRHVEGARLSVDGEPLLELYDTPGL 66


>gi|148550209|ref|YP_001270311.1| HSR1-related GTP-binding protein [Pseudomonas putida F1]
 gi|148514267|gb|ABQ81127.1| GTP-binding protein, HSR1-related [Pseudomonas putida F1]
          Length = 454

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L  +DV    V+  P TTR V    L ++G  L+++ DT G+
Sbjct: 6   KLAVVGHTNVGKTSLLRTLT-RDVGFGEVSHRPSTTRHVEGARLSVDGEPLLELYDTPGL 64


>gi|289192362|ref|YP_003458303.1| GTP-binding protein HSR1-related protein [Methanocaldococcus sp.
           FS406-22]
 gi|288938812|gb|ADC69567.1| GTP-binding protein HSR1-related protein [Methanocaldococcus sp.
           FS406-22]
          Length = 367

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L E+ +   K+ I+G+ N GKSS+ NAL  K  A+   + G T+    + L      +K+
Sbjct: 98  LKEMGKKEGKVGIVGYPNVGKSSIINALTGKRKALTGSVAGLTKGEQWVRLTKN---IKL 154

Query: 272 SDTAGI---RETDDIV 284
            DT G+   R+ DD+V
Sbjct: 155 MDTPGVLEMRDEDDLV 170


>gi|228902341|ref|ZP_04066498.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           IBL 4222]
 gi|228857310|gb|EEN01813.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           IBL 4222]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|238854460|ref|ZP_04644799.1| ribosome biogenesis GTPase YqeH [Lactobacillus jensenii 269-3]
 gi|260665492|ref|ZP_05866339.1| ribosome biogenesis GTPase YqeH [Lactobacillus jensenii SJ-7A-US]
 gi|282934530|ref|ZP_06339782.1| ribosome biogenesis GTPase YqeH [Lactobacillus jensenii 208-1]
 gi|313471824|ref|ZP_07812316.1| ribosome biogenesis GTPase YqeH [Lactobacillus jensenii 1153]
 gi|238832887|gb|EEQ25185.1| ribosome biogenesis GTPase YqeH [Lactobacillus jensenii 269-3]
 gi|239530132|gb|EEQ69133.1| ribosome biogenesis GTPase YqeH [Lactobacillus jensenii 1153]
 gi|260560760|gb|EEX26737.1| ribosome biogenesis GTPase YqeH [Lactobacillus jensenii SJ-7A-US]
 gi|281301368|gb|EFA93660.1| ribosome biogenesis GTPase YqeH [Lactobacillus jensenii 208-1]
          Length = 369

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 15/86 (17%)

Query: 222 IVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +  +G +N GKS+L N++       KD+   +  PGTT D + I LD   YLV   DT G
Sbjct: 169 VYFVGTTNVGKSTLINSIIDLMGDVKDLITTSRFPGTTLDQIKIPLDSGHYLV---DTPG 225

Query: 277 IRETDDIVEKEGIKRTFLEVENADLI 302
           I     + EK+    ++L  ++ DLI
Sbjct: 226 I-----MTEKQ--LASYLNAKDLDLI 244


>gi|224476442|ref|YP_002634048.1| GTP-binding protein HflX [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421049|emb|CAL27863.1| similar to GTP-binding protein HflX [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 420

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKS+ FN LA     +KD+   T  P  TR +   D    G+ + ISDT
Sbjct: 206 FQVALVGYTNAGKSTWFNILADESTYEKDLLFATLDPK-TRQIQIND----GFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E  +ADL+L
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEARDADLLL 289


>gi|219685709|ref|ZP_03540522.1| GTP-binding protein Era [Borrelia garinii Far04]
 gi|219672759|gb|EED29785.1| GTP-binding protein Era [Borrelia garinii Far04]
          Length = 290

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 21/144 (14%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGI---R 278
            ILG  + GKS+L N++    ++I++ IP TTR+ +  I  D  G ++ I DT G    +
Sbjct: 7   AILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFI-DTPGFHLSK 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKN--IDFIFIGTKSD 330
           +  +I   + I  +  EVE   LIL + +I  K      K +   KN  I F+ +  K D
Sbjct: 66  KKFNIAMMKNIHSSIGEVE---LILYIIDIQDKPGEEENKMLEIIKNSKIKFLVLINKVD 122

Query: 331 LYSTYTEEYDHLISSFTGE-GLEE 353
           L +T  +E    I+ F  E G+E+
Sbjct: 123 LKNTKIKE----ITQFLKEKGIED 142


>gi|195434020|ref|XP_002065001.1| GK14912 [Drosophila willistoni]
 gi|194161086|gb|EDW75987.1| GK14912 [Drosophila willistoni]
          Length = 576

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 173 EADLDFSEEEDVQNFSSKE--VLNDILFLKND--ISSHISQGKLGEI-IRNGYKIV-ILG 226
           E DL   E++  ++  S++  +L D+  +  +  ISS I       +   NG   +  +G
Sbjct: 281 EVDLSAWEQKIREDMRSEQLDILEDVATVTGELKISSSIDTTPHEHVKYHNGIATIGCIG 340

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
             N GKSSL NAL  + V  V+  PG T+   TI L     LV++ D  G+
Sbjct: 341 FPNVGKSSLINALKGRKVVSVSRTPGHTKHFQTIFLTP---LVRLCDCPGL 388


>gi|167005307|ref|ZP_02271065.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 279

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           G+ E+   + +  ++     + + D+IL +  +
Sbjct: 60  GLHESGATLNQLLVQSAIKSIGDCDVILFVASV 92


>gi|104779553|ref|YP_606051.1| hypothetical protein PSEEN0271 [Pseudomonas entomophila L48]
 gi|95108540|emb|CAK13234.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 454

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L  +DV    V+  P TTR V    L ++G  L+++ DT G+
Sbjct: 6   KLAVVGHTNVGKTSLLRTLT-RDVGFGEVSHRPSTTRHVEGARLSVDGEPLLELYDTPGL 64


>gi|74007450|ref|XP_538054.2| PREDICTED: similar to guanine nucleotide binding protein-like 3
           (nucleolar)-like [Canis familiaris]
          Length = 649

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 312 RLGEV-RTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVYLD---KFIR 367

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 368 LLDAPGI 374


>gi|30021926|ref|NP_833557.1| ribosomal biogenesis GTPase [Bacillus cereus ATCC 14579]
 gi|218236121|ref|YP_002368639.1| ribosomal biogenesis GTPase [Bacillus cereus B4264]
 gi|228960054|ref|ZP_04121718.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229047525|ref|ZP_04193115.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH676]
 gi|229111309|ref|ZP_04240862.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-15]
 gi|229129114|ref|ZP_04258087.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
           BDRD-Cer4]
 gi|229146409|ref|ZP_04274780.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
           BDRD-ST24]
 gi|229152037|ref|ZP_04280232.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1550]
 gi|296504333|ref|YP_003666033.1| ribosomal biogenesis GTPase [Bacillus thuringiensis BMB171]
 gi|29897482|gb|AAP10758.1| GTP-binding protein [Bacillus cereus ATCC 14579]
 gi|218164078|gb|ACK64070.1| GTPase family protein [Bacillus cereus B4264]
 gi|228631386|gb|EEK88020.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1550]
 gi|228637042|gb|EEK93501.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
           BDRD-ST24]
 gi|228654351|gb|EEL10216.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
           BDRD-Cer4]
 gi|228672085|gb|EEL27376.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-15]
 gi|228723772|gb|EEL75127.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH676]
 gi|228799570|gb|EEM46523.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296325385|gb|ADH08313.1| ribosomal biogenesis GTPase [Bacillus thuringiensis BMB171]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|312127981|ref|YP_003992855.1| ribosome biogenesis gtp-binding protein ysxc [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778000|gb|ADQ07486.1| ribosome biogenesis GTP-binding protein YsxC [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 204

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV--LTID-----LDLEGY 267
           + I G SN GKSS  NA+ K  +A V   PG TR +    ID     +DL GY
Sbjct: 28  MCICGRSNVGKSSFINAVFKDKLAKVGSTPGKTRTINFFNIDNKFRVVDLPGY 80


>gi|302872193|ref|YP_003840829.1| ribosome biogenesis GTP-binding protein YsxC [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575052|gb|ADL42843.1| ribosome biogenesis GTP-binding protein YsxC [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 204

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV--LTID-----LDLEGY 267
           + I G SN GKSS  NA+ K  +A V   PG TR +    ID     +DL GY
Sbjct: 28  MCICGRSNVGKSSFINAVFKDKLAKVGSTPGKTRTINFFNIDDKFRVVDLPGY 80


>gi|296133540|ref|YP_003640787.1| ribosome biogenesis GTP-binding protein YlqF [Thermincola sp. JR]
 gi|296032118|gb|ADG82886.1| ribosome biogenesis GTP-binding protein YlqF [Thermincola potens
           JR]
          Length = 286

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++ILG  N GKSSL N LA K      D PG TR    I +   G  +++ DT GI
Sbjct: 126 RVMILGIPNVGKSSLINKLAGKGATRTGDRPGVTRGKQWIRV---GRDMELLDTPGI 179


>gi|296112101|ref|YP_003622483.1| GTP-binding protein [Leuconostoc kimchii IMSNU 11154]
 gi|295833633|gb|ADG41514.1| GTP-binding protein [Leuconostoc kimchii IMSNU 11154]
          Length = 303

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   V   DT G+ +  
Sbjct: 11  VAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDAAQVVFIDTPGVHKPQ 70

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +    +K  F  +  AD I  +
Sbjct: 71  NSLGDFMVKSAFSALHEADAIWFV 94


>gi|270292279|ref|ZP_06198493.1| GTP-binding protein HflX [Streptococcus sp. M143]
 gi|270279325|gb|EFA25168.1| GTP-binding protein HflX [Streptococcus sp. M143]
          Length = 412

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K +    D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNTLTSK-IQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPRLTLY 317

Query: 327 TKSDLYSTYTEEYD--HLISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL   +T       LIS+ + +  E L    + KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVEDFTPTQTPYALISAKSEDSRENLQALFLEKIKEIFEAFTLRVPFS-KSYKIH 375


>gi|270158385|ref|ZP_06187042.1| GTP-binding protein HflX [Legionella longbeachae D-4968]
 gi|289163370|ref|YP_003453508.1| GTPase [Legionella longbeachae NSW150]
 gi|269990410|gb|EEZ96664.1| GTP-binding protein HflX [Legionella longbeachae D-4968]
 gi|288856543|emb|CBJ10338.1| putative GTPase [Legionella longbeachae NSW150]
          Length = 419

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAG-IRE 279
           + ++G++NAGKS+LFNAL  + + +   +  T  D     L+L G   V ++DT G IR+
Sbjct: 200 VSLVGYTNAGKSTLFNALTGESIYVANQLFATL-DPTMRQLNLPGSSSVIVTDTVGFIRD 258

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
               +  E  + T  E + ADL+L
Sbjct: 259 LPHHL-VEAFRATLEETQQADLLL 281


>gi|258405422|ref|YP_003198164.1| ribosome biogenesis GTP-binding protein YsxC [Desulfohalobium
           retbaense DSM 5692]
 gi|257797649|gb|ACV68586.1| ribosome biogenesis GTP-binding protein YsxC [Desulfohalobium
           retbaense DSM 5692]
          Length = 205

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDV 257
           ++ + G SN GKSSL NALA +K +A ++  PG TR +
Sbjct: 23  QVALAGRSNVGKSSLINALAGRKKLAKISSTPGKTRSL 60


>gi|123500021|ref|XP_001327748.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121910682|gb|EAY15525.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 504

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N GKSS+ N+L +++V  V  IPG T+    I L  + YL+   D  G    DDI 
Sbjct: 285 VGYPNVGKSSVINSLRREEVCPVAPIPGETKVWRYITLTKKIYLI---DCPGHVYPDDIN 341

Query: 285 EKEGIKRTFLEVE 297
           + + + R     E
Sbjct: 342 DGDRVLRGVTRTE 354


>gi|34499008|ref|NP_903223.1| ferrous iron transport protein B [Chromobacterium violaceum ATCC
           12472]
 gi|34104858|gb|AAQ61215.1| ferrous iron transport protein B [Chromobacterium violaceum ATCC
           12472]
          Length = 589

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 22/220 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  N GKS+LFN L       V + PG T ++++  L L G +V++ D  G+ + 
Sbjct: 3   RFALIGLPNTGKSTLFNRLTGMS-QRVGNWPGLTVELISSRLLLGGKMVELIDLPGVNDL 61

Query: 281 DDIVEKEGIKRTFL---EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
               + E + R  L     + A L+L   +++ +     P  +  I  G    +     +
Sbjct: 62  TGYTDDEAVVRDVLLSTPFDGAVLVLNASQLDRQ----LPLALQVIASGLSCLVALNMAD 117

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH--LYHLSQTVRYLEMASL 395
           E   L  S   + L E +              P ++ S KR      LS+ +  L   S 
Sbjct: 118 EARLLGVSIDVDALAERLGA------------PVALVSAKRMEGWPRLSEALNRLAAQSG 165

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435
                 LD + E  R   ++  K+ GC  +  +L  + ++
Sbjct: 166 PAVHAQLDKVPEAQRAIDLARRKLEGCWRLPPVLPTLLTE 205


>gi|228922592|ref|ZP_04085892.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837021|gb|EEM82362.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|282600131|ref|ZP_05973129.2| putative GTP-binding protein [Providencia rustigianii DSM 4541]
 gi|282566534|gb|EFB72069.1| putative GTP-binding protein [Providencia rustigianii DSM 4541]
          Length = 252

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +G + AGKSSL NAL +  ++ V+D+ G TR      + +  + +   D  G+ E+
Sbjct: 1   MGKTGAGKSSLINALFQCQLSPVSDVSGCTRQAQRFSMTVNNHTLTFIDLPGVGES 56


>gi|297194461|ref|ZP_06911859.1| GTP-binding protein Era [Streptomyces pristinaespiralis ATCC 25486]
 gi|197718729|gb|EDY62637.1| GTP-binding protein Era [Streptomyces pristinaespiralis ATCC 25486]
          Length = 321

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 12/130 (9%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+   + G  NAGKS+L NAL  + VAI +  P TTR  V  I    E  L+ + DT 
Sbjct: 21  RAGFACFV-GRPNAGKSTLTNALVGQKVAITSTRPQTTRHTVRGIVHRPEAQLI-LVDTP 78

Query: 276 GIRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEISFPKNIDFIFIG 326
           G+ +   ++ +   + ++ T+ EV+       AD  L   +    KE++  K    + I 
Sbjct: 79  GLHKPRTLLGERLNDIVRTTWAEVDVIGFCLPADQKLGPGDRFIAKELAGIKKTPKVAII 138

Query: 327 TKSDLYSTYT 336
           TK+DL  + T
Sbjct: 139 TKTDLVDSKT 148


>gi|312793144|ref|YP_004026067.1| ribosome biogenesis gtp-binding protein ysxc [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180284|gb|ADQ40454.1| ribosome biogenesis GTP-binding protein YsxC [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 204

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV--LTID-----LDLEGY 267
           + I G SN GKSS  NA+ K  +A V   PG TR +    ID     +DL GY
Sbjct: 28  MCICGRSNVGKSSFINAVFKDKLAKVGSTPGQTRTINFFNIDNKFRVVDLPGY 80


>gi|270159972|ref|ZP_06188628.1| GTP-binding protein Era [Legionella longbeachae D-4968]
 gi|289165284|ref|YP_003455422.1| membrane-associated, 16S rRNA-binding GTPase [Legionella
           longbeachae NSW150]
 gi|269988311|gb|EEZ94566.1| GTP-binding protein Era [Legionella longbeachae D-4968]
 gi|288858457|emb|CBJ12335.1| membrane-associated, 16S rRNA-binding GTPase [Legionella
           longbeachae NSW150]
          Length = 294

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGI 277
           GY I ++G  N GKS+L N + ++ V+I +  P TTR  + + +  EG Y     DT GI
Sbjct: 6   GY-IALVGRPNVGKSTLLNCILQQKVSITSKKPQTTRHSI-LGICTEGDYQFVYVDTPGI 63

Query: 278 RETDDIVEKEGIKRTFLEV-ENADLILLLKEINSKKE 313
            + +       + +T + V  + D+I  L +    KE
Sbjct: 64  HQGNKKAMNRMMNKTAISVLRDVDVIAFLVDGTHWKE 100


>gi|296130043|ref|YP_003637293.1| GTP-binding protein Era [Cellulomonas flavigena DSM 20109]
 gi|296021858|gb|ADG75094.1| GTP-binding protein Era [Cellulomonas flavigena DSM 20109]
          Length = 306

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+  ++ G  N GKS+L NAL  + VAI +  P TTR V+   +  E   + + DT G
Sbjct: 4   RSGFACLV-GRPNTGKSTLTNALVGQKVAITSGRPQTTRHVVRGIVHREDAQLVLVDTPG 62

Query: 277 I 277
           +
Sbjct: 63  L 63


>gi|254172541|ref|ZP_04879216.1| GTP-binding protein [Thermococcus sp. AM4]
 gi|214033470|gb|EEB74297.1| GTP-binding protein [Thermococcus sp. AM4]
          Length = 188

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           K+ I+G  N GKS+L NAL    V+ V ++PGTT+ ++
Sbjct: 3   KVAIIGAENVGKSTLMNALLGGRVSEVENLPGTTKGII 40


>gi|154484522|ref|ZP_02026970.1| hypothetical protein EUBVEN_02236 [Eubacterium ventriosum ATCC
           27560]
 gi|149734370|gb|EDM50287.1| hypothetical protein EUBVEN_02236 [Eubacterium ventriosum ATCC
           27560]
          Length = 300

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 3/100 (3%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVK 270
           + E  ++G+ + ++G  N GKS+L N +  + +AI +  P TTR+ + T+    EG +V 
Sbjct: 1   MKEKFKSGF-VALIGRPNVGKSTLMNQIIGQKIAITSKKPQTTRNKIQTVYTCDEGQIVF 59

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           + DT GI +  + + +  +      ++  DLIL L E ++
Sbjct: 60  L-DTPGIHKAKNKLGEYMVNVAEKTLKEVDLILWLVEPDT 98


>gi|123966232|ref|YP_001011313.1| GTPase SAR1 and related small G proteins [Prochlorococcus marinus
           str. MIT 9515]
 gi|123200598|gb|ABM72206.1| GTPase SAR1 and related small G proteins [Prochlorococcus marinus
           str. MIT 9515]
          Length = 496

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 4/100 (4%)

Query: 209 QGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLE 265
           + KL E ++ G Y +++ G  ++GK+S+  AL K  +  ++   GTT+++ +  I + + 
Sbjct: 103 KNKLTEQLKYGDYNVILFGAGSSGKTSIARALLKNLIGKISPTIGTTKNIASYKIRIPIL 162

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
              + I DT G+ E     EK   K T +E   +DLIL +
Sbjct: 163 KRNINIIDTPGLFEASIDGEKRE-KSTIIEASKSDLILFV 201


>gi|116283289|gb|AAH03603.1| GNL3L protein [Homo sapiens]
          Length = 575

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 245 RLGEV-RTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGITKFMQEVYLD---KFIR 300

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 301 LLDAPGI 307


>gi|163941389|ref|YP_001646273.1| GTP1/OBG protein [Bacillus weihenstephanensis KBAB4]
 gi|229012878|ref|ZP_04170045.1| hypothetical protein bmyco0001_33170 [Bacillus mycoides DSM 2048]
 gi|229065855|ref|ZP_04201052.1| hypothetical protein bcere0026_58370 [Bacillus cereus AH603]
 gi|163863586|gb|ABY44645.1| GTP1/OBG protein [Bacillus weihenstephanensis KBAB4]
 gi|228715393|gb|EEL67224.1| hypothetical protein bcere0026_58370 [Bacillus cereus AH603]
 gi|228748422|gb|EEL98280.1| hypothetical protein bmyco0001_33170 [Bacillus mycoides DSM 2048]
          Length = 423

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVALIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|293365777|ref|ZP_06612483.1| GTP-binding protein HflX [Streptococcus oralis ATCC 35037]
 gi|307703354|ref|ZP_07640297.1| GTP-binding proten HflX [Streptococcus oralis ATCC 35037]
 gi|291315710|gb|EFE56157.1| GTP-binding protein HflX [Streptococcus oralis ATCC 35037]
 gi|307623090|gb|EFO02084.1| GTP-binding proten HflX [Streptococcus oralis ATCC 35037]
          Length = 412

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNTLTTK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPRLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E+L    + KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVEDFTPTQTPYALISAKSEDSREQLQALFLEKIKDIFEAFTLRVPFS-KSYKIH 375


>gi|229061441|ref|ZP_04198786.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH603]
 gi|228717864|gb|EEL69512.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH603]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|229168439|ref|ZP_04296163.1| hypothetical protein bcere0007_33960 [Bacillus cereus AH621]
 gi|228615083|gb|EEK72184.1| hypothetical protein bcere0007_33960 [Bacillus cereus AH621]
          Length = 423

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVALIGYTNAGKSTLFNRLTEADT-FEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|218671650|ref|ZP_03521319.1| GTP-binding protein Era [Rhizobium etli GR56]
          Length = 274

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 24  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++  +   +   ++ADLI+LL
Sbjct: 84  RRLDRAMVTSAWGGAKDADLIMLL 107


>gi|222528931|ref|YP_002572813.1| ribosome biogenesis GTP-binding protein YsxC [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222455778|gb|ACM60040.1| small GTP-binding protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 204

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV--LTID-----LDLEGY 267
           + I G SN GKSS  NA+ K  +A V   PG TR +    ID     +DL GY
Sbjct: 28  MCICGRSNVGKSSFINAVFKDKLAKVGSTPGKTRTINFFNIDNKFRVVDLPGY 80


>gi|224534458|ref|ZP_03675034.1| GTP-binding protein [Borrelia spielmanii A14S]
 gi|224514135|gb|EEF84453.1| GTP-binding protein [Borrelia spielmanii A14S]
          Length = 279

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKSS+ N L+ K  A V + PG T+++  + +  E   + + D  GI   
Sbjct: 119 KVLIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKISEE---INLFDMPGILWH 175

Query: 281 DDIVEKEGIKRTFLE------VENADLILLLKEI 308
           + + +    K   L+      V+N DL L L EI
Sbjct: 176 NIVDQSIAKKLAILDMIKNEIVDNIDLALYLLEI 209


>gi|188577281|ref|YP_001914210.1| GTP-binding protein Era [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521733|gb|ACD59678.1| GTP-binding protein Era [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 285

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGI 277
           ++G  N GKS+L NAL    V+IV++ P TTR  +L I    EG LV + DT G+
Sbjct: 1   MIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLV-LVDTPGL 54


>gi|168064687|ref|XP_001784291.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664167|gb|EDQ50897.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 300

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-- 276
           GY + ++G  NAGKS+L N +  + ++IVT+ P TTR  +        Y + + DT G  
Sbjct: 3   GY-VALVGKPNAGKSTLLNQIIGQKLSIVTNKPQTTRHRILGICSGPDYQMVLYDTPGVI 61

Query: 277 ---IRETDDIVEKEGIKRTFLEVENADLILLL 305
              +++ D+++ +     T     NAD +L++
Sbjct: 62  SKQVKKLDEMMMRNVRTATL----NADCVLIV 89


>gi|125525991|gb|EAY74105.1| hypothetical protein OsI_01991 [Oryza sativa Indica Group]
          Length = 591

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I+G  N GKSSL N+L +  V  V   PG TR +  + LD +   VK+ D  G+
Sbjct: 273 IVGLPNVGKSSLINSLKRSRVVNVGSTPGVTRSMQEVQLDKK---VKLLDCPGV 323


>gi|115436636|ref|NP_001043076.1| Os01g0375000 [Oryza sativa Japonica Group]
 gi|54290761|dbj|BAD61382.1| putative nucleostemin [Oryza sativa Japonica Group]
 gi|54290764|dbj|BAD61385.1| putative nucleostemin [Oryza sativa Japonica Group]
 gi|113532607|dbj|BAF04990.1| Os01g0375000 [Oryza sativa Japonica Group]
 gi|222618471|gb|EEE54603.1| hypothetical protein OsJ_01830 [Oryza sativa Japonica Group]
          Length = 591

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I+G  N GKSSL N+L +  V  V   PG TR +  + LD +   VK+ D  G+
Sbjct: 273 IVGLPNVGKSSLINSLKRSRVVNVGSTPGVTRSMQEVQLDKK---VKLLDCPGV 323


>gi|312622795|ref|YP_004024408.1| ribosome biogenesis GTP-binding protein ysxc [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203262|gb|ADQ46589.1| ribosome biogenesis GTP-binding protein YsxC [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 204

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV--LTID-----LDLEGY 267
           + I G SN GKSS  NA+ K  +A V   PG TR +    ID     +DL GY
Sbjct: 28  MCICGRSNVGKSSFINAVFKDKLAKVGSTPGKTRTINFFNIDNKFRVVDLPGY 80


>gi|294791925|ref|ZP_06757073.1| GTP-binding protein Era [Veillonella sp. 6_1_27]
 gi|294457155|gb|EFG25517.1| GTP-binding protein Era [Veillonella sp. 6_1_27]
          Length = 307

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + ++G  N GKS+L NAL    +AIV+D   TTR+ +      E   +   D
Sbjct: 13  EHFKSGF-VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDEAKQIVFMD 71

Query: 274 TAGIRE 279
           T G+ +
Sbjct: 72  TPGVHK 77


>gi|260887867|ref|ZP_05899130.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
           ATCC 35185]
 gi|330838732|ref|YP_004413312.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
           ATCC 35185]
 gi|260862373|gb|EEX76873.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
           ATCC 35185]
 gi|329746496|gb|AEB99852.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
           ATCC 35185]
          Length = 302

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++ILG  N GKSSL N LA    A   D PG TR    I +   G  V + DT GI
Sbjct: 132 RVMILGIPNVGKSSLINRLAGAAKAKTADKPGVTRAKQWIRI---GADVDLLDTPGI 185


>gi|229192007|ref|ZP_04318977.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
           10876]
 gi|228591558|gb|EEK49407.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
           10876]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|255568647|ref|XP_002525297.1| GTP-binding protein engB, putative [Ricinus communis]
 gi|223535455|gb|EEF37125.1| GTP-binding protein engB, putative [Ricinus communis]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +  ILG SN GKSSL NAL  KK+VA+ +  PG T+ +    ++   Y+V +
Sbjct: 118 EFAILGRSNVGKSSLINALVRKKEVALTSKKPGKTQLINHFLVNKSWYIVDL 169


>gi|212637751|ref|YP_002314276.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella
           piezotolerans WP3]
 gi|226741186|sp|B8CVL3|ENGB_SHEPW RecName: Full=Probable GTP-binding protein EngB
 gi|212559235|gb|ACJ31689.1| GTP-binding protein EngB [Shewanella piezotolerans WP3]
          Length = 224

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 10/70 (14%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTID- 261
           +H+++   G++   G +I   G SNAGKSS  N L ++ +A  +  PG T+  +V  +D 
Sbjct: 21  AHLNEYLPGDV---GVEIAFAGRSNAGKSSALNLLTEQKIARTSKTPGRTQLINVFKLDK 77

Query: 262 ----LDLEGY 267
               +DL GY
Sbjct: 78  HRRLVDLPGY 87


>gi|110597310|ref|ZP_01385598.1| ferrous iron transport protein B:Small GTP-binding protein domain
           [Chlorobium ferrooxidans DSM 13031]
 gi|110341146|gb|EAT59614.1| ferrous iron transport protein B:Small GTP-binding protein domain
           [Chlorobium ferrooxidans DSM 13031]
          Length = 712

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 222 IVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           I + G+ N GKSSLFNAL  A++ V    +  G T +     +D +GY + + D  G   
Sbjct: 9   IALAGNPNCGKSSLFNALTGAQQKVG---NFSGVTVEKHEGYIDYKGYRITVVDLPGTYS 65

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                 +E + R +L  E  D+++
Sbjct: 66  LTPYSPEELVTRAYLVRERPDVVV 89


>gi|49478407|ref|YP_037899.1| ribosomal biogenesis GTPase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49329963|gb|AAT60609.1| conserved hypothetical protein, GTPase family [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|15602772|ref|NP_245844.1| hypothetical protein PM0907 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721223|gb|AAK02991.1| HflX [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 448

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 52/210 (24%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           I ++G++NAGKS+LFN + + +V     +  T    L  + +   G  + ++DT G IR 
Sbjct: 222 ISLVGYTNAGKSTLFNLITQANVYAADQLFATLDPTLRRLQIQDVGTTI-LADTVGFIRH 280

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKN 319
              D+V     K T  E   A L+L                   +LKEIN+        +
Sbjct: 281 LPHDLV--SAFKSTLQETTEAALLLHVIDCADPRKLENIHAVEAVLKEINA-------GD 331

Query: 320 IDFIFIGTKSDLYSTYTE--EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLP 370
           I  + +  K D  +      EYD         +S+ TG GL  L++ I   L N+   L 
Sbjct: 332 IPTLLVYNKIDQVAHIEPHIEYDQEQRPIAVYMSAQTGIGLHLLLDAISLCLKNEILDLA 391

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
            ++P H   + H           +L ++DC
Sbjct: 392 LTLPVHTGKIRH-----------ALYQQDC 410


>gi|56751667|ref|YP_172368.1| GTP-binding protein HflX [Synechococcus elongatus PCC 6301]
 gi|56686626|dbj|BAD79848.1| GTP-binding protein HflX [Synechococcus elongatus PCC 6301]
          Length = 535

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDI-----PGTTRDVLTIDLDLEGYLVKISDTAG 276
           I I+G++NAGKS+L N L + +V     +     P T R VL  +   E  +V ++DT G
Sbjct: 365 IAIVGYTNAGKSTLLNILTQAEVYAADQLFATLDPTTRRLVLNANPGSEPDVVLLTDTVG 424

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
                     +  + T  EV  AD +L L +++
Sbjct: 425 FIHELPPPLVDAFRATLEEVTEADALLHLVDLS 457


>gi|261253899|ref|ZP_05946472.1| GTP-binding protein Era [Vibrio orientalis CIP 102891]
 gi|260937290|gb|EEX93279.1| GTP-binding protein Era [Vibrio orientalis CIP 102891]
          Length = 325

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N +  + ++I +  P TTR  + + +D EG Y     DT G+   
Sbjct: 34  VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRI-MGVDTEGDYQAIYVDTPGLH-- 90

Query: 281 DDIVEKEGIKRTFLEVENADL 301
             I EK  I R      N+ L
Sbjct: 91  --IEEKRAINRLMNRAANSSL 109


>gi|228986981|ref|ZP_04147107.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228772759|gb|EEM21199.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|222097283|ref|YP_002531340.1| ribosomal biogenesis gtpase [Bacillus cereus Q1]
 gi|221241341|gb|ACM14051.1| GTPase family protein [Bacillus cereus Q1]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|206972755|ref|ZP_03233685.1| GTPase family protein [Bacillus cereus AH1134]
 gi|218898991|ref|YP_002447402.1| GTPase family protein [Bacillus cereus G9842]
 gi|228909663|ref|ZP_04073486.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           IBL 200]
 gi|228940926|ref|ZP_04103485.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228954114|ref|ZP_04116143.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228966783|ref|ZP_04127827.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228973855|ref|ZP_04134431.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980445|ref|ZP_04140755.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           Bt407]
 gi|229071336|ref|ZP_04204559.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus F65185]
 gi|229081093|ref|ZP_04213603.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock4-2]
 gi|229180114|ref|ZP_04307458.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 172560W]
 gi|206732320|gb|EDZ49512.1| GTPase family protein [Bacillus cereus AH1134]
 gi|218544561|gb|ACK96955.1| GTPase family protein [Bacillus cereus G9842]
 gi|228603323|gb|EEK60800.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 172560W]
 gi|228702137|gb|EEL54613.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock4-2]
 gi|228711790|gb|EEL63742.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus F65185]
 gi|228779265|gb|EEM27522.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           Bt407]
 gi|228785880|gb|EEM33883.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228792882|gb|EEM40440.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228805680|gb|EEM52270.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228818762|gb|EEM64828.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228849952|gb|EEM94783.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           IBL 200]
 gi|326941607|gb|AEA17503.1| ribosomal biogenesis GTPase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|148981906|ref|ZP_01816564.1| GTP-binding protein Era [Vibrionales bacterium SWAT-3]
 gi|145960707|gb|EDK26049.1| GTP-binding protein Era [Vibrionales bacterium SWAT-3]
          Length = 323

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           SS   Q  L E    G+ I I+G  N GKS+L N +  + ++I +  P TTR  + + ++
Sbjct: 15  SSDSKQPSLPENQHCGF-IAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRI-MGVE 72

Query: 264 LEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            EG Y     DT G+     I EK  I R      N+ L
Sbjct: 73  TEGDYQAIFVDTPGLH----IEEKRAINRLMNRAANSSL 107


>gi|20330773|gb|AAM19136.1|AC103891_16 Putative nucleotide binding protein [Oryza sativa Japonica Group]
 gi|27311248|gb|AAO00694.1| Putative nucleotide binding protein [Oryza sativa Japonica Group]
 gi|125585504|gb|EAZ26168.1| hypothetical protein OsJ_10034 [Oryza sativa Japonica Group]
          Length = 255

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 223 VILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
            +LG SN GKSSL NAL  +K+ A+ +  PG T+ +    ++   YLV +    G+   D
Sbjct: 43  AVLGRSNVGKSSLINALIRRKEAALTSKKPGKTQTINHFLVNKSWYLVDLPGY-GMYHND 101

Query: 282 DIVE 285
            I++
Sbjct: 102 KIID 105


>gi|81301257|ref|YP_401465.1| GTP-binding protein HflX [Synechococcus elongatus PCC 7942]
 gi|81170138|gb|ABB58478.1| GTP-binding protein HflX [Synechococcus elongatus PCC 7942]
          Length = 535

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDI-----PGTTRDVLTIDLDLEGYLVKISDTAG 276
           I I+G++NAGKS+L N L + +V     +     P T R VL  +   E  +V ++DT G
Sbjct: 365 IAIVGYTNAGKSTLLNILTQAEVYAADQLFATLDPTTRRLVLNANPGSEPDVVLLTDTVG 424

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
                     +  + T  EV  AD +L L +++
Sbjct: 425 FIHELPPPLVDAFRATLEEVTEADALLHLVDLS 457


>gi|320168236|gb|EFW45135.1| Gnl3l protein [Capsaspora owczarzaki ATCC 30864]
          Length = 676

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + I+G  N GKSS+ N+L +     V   PG TR    I LD     +K+ D  
Sbjct: 292 IKTTVTVGIIGQPNVGKSSIINSLKRSKACNVGPTPGVTRQAQEIHLDKN---IKLLDCP 348

Query: 276 GI 277
           GI
Sbjct: 349 GI 350


>gi|296330820|ref|ZP_06873295.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674338|ref|YP_003866010.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296151825|gb|EFG92699.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412582|gb|ADM37701.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 282

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     + +   G  +++ DT GI
Sbjct: 122 RALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGI 175


>gi|218698076|ref|YP_002405743.1| putative GTP-binding protein [Escherichia coli 55989]
 gi|218354808|emb|CAV01921.1| putative GTP-binding protein [Escherichia coli 55989]
          Length = 294

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSHLTFLPEEIRQKILE-HLHSVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            + G TR    + L      + + D  GI ET  
Sbjct: 68  PLNGCTRQAHRLTLQFGERRMTLVDLPGIGETPQ 101


>gi|254382934|ref|ZP_04998290.1| GTP-binding protein Era [Streptomyces sp. Mg1]
 gi|194341835|gb|EDX22801.1| GTP-binding protein Era [Streptomyces sp. Mg1]
          Length = 323

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   + G  NAGKS+L NAL    VAI ++ P TTR  +   +      + + DT G
Sbjct: 23  RAGFACFV-GRPNAGKSTLTNALVGTKVAITSNRPQTTRHTVRGIVHRPDAQLVLVDTPG 81

Query: 277 IRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEISFPKNIDFIFIGT 327
           + +   ++ +   + ++ T+ EV+       AD  L   +    KE++  K    I I T
Sbjct: 82  LHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKFIAKELAGIKKTPKIAIIT 141

Query: 328 KSDLYST 334
           K+DL  +
Sbjct: 142 KTDLVES 148


>gi|171920687|ref|ZP_02931911.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|185178754|ref|ZP_02964563.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024406|ref|ZP_02997066.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518422|ref|ZP_03003915.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|188524221|ref|ZP_03004278.1| ribosome biogenesis GTP-binding protein YlqF [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195867375|ref|ZP_03079379.1| ribosome biogenesis GTP-binding protein YlqF [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198273413|ref|ZP_03205949.1| ribosome biogenesis GTP-binding protein YlqF [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|209554629|ref|YP_002285047.1| ribosome biogenesis GTP-binding protein YlqF [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|225550895|ref|ZP_03771844.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225551199|ref|ZP_03772145.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|171903423|gb|EDT49712.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|184209364|gb|EDU06407.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188018684|gb|EDU56724.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188998103|gb|EDU67200.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|195659833|gb|EDX53213.1| ribosome biogenesis GTP-binding protein YlqF [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195660851|gb|EDX54104.1| ribosome biogenesis GTP-binding protein YlqF [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198249933|gb|EDY74713.1| ribosome biogenesis GTP-binding protein YlqF [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|209542130|gb|ACI60359.1| ribosome biogenesis GTP-binding protein YlqF [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|225379014|gb|EEH01379.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|225380049|gb|EEH02411.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 274

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 11/83 (13%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           +I+G  N GKSSL N LA K    V + PG T+      ++   YL+   DT GI   D 
Sbjct: 120 MIIGLPNIGKSSLINFLAPKKTLKVENRPGVTKTQSIRQINQHFYLI---DTPGIFLKDI 176

Query: 283 IVEKEG--------IKRTFLEVE 297
             E++G        IK+  LE+E
Sbjct: 177 QKERDGFVLTLINCIKKEVLELE 199


>gi|154498371|ref|ZP_02036749.1| hypothetical protein BACCAP_02360 [Bacteroides capillosus ATCC
           29799]
 gi|150272682|gb|EDM99860.1| hypothetical protein BACCAP_02360 [Bacteroides capillosus ATCC
           29799]
          Length = 430

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 32/183 (17%)

Query: 216 IRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I+N   +V I+G++NAGKS+L N L         DIP   R  L   LD     ++ISDT
Sbjct: 200 IKNEVPVVAIVGYTNAGKSTLLNKLTG------ADIPANNR--LFDTLDTTTRTLEISDT 251

Query: 275 AGIRETDDI--VEK------EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
             +  +D +  + K      E  K T  E+  ADL+L + + ++ +       ++ + + 
Sbjct: 252 CTVLISDTVGFISKLPHHLVEAFKATLEELSFADLLLHVIDTSNPEWREQAAVVEKLIVE 311

Query: 327 ------------TKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPF 371
                        KSDLY      +      IS+ TG GL+EL+ KI   L     ++  
Sbjct: 312 LGAAQTPRIDVFNKSDLYVGDIVPHGEDIVSISAKTGAGLDELLKKIGDRLDTGAHRVVL 371

Query: 372 SIP 374
            IP
Sbjct: 372 RIP 374


>gi|86739978|ref|YP_480378.1| GTP-binding protein Era [Frankia sp. CcI3]
 gi|86566840|gb|ABD10649.1| GTP-binding protein Era [Frankia sp. CcI3]
          Length = 307

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 11/124 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+  ++ G  NAGKS+L NAL    VAI +  P TTR  +   +  +   + + DT G
Sbjct: 10  RAGFACLV-GRPNAGKSTLTNALVGTKVAITSGRPQTTRHAIRGIVHRDDAQLVLVDTPG 68

Query: 277 IRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK------KEIS-FPKNIDFIFIG 326
           +     ++ +   + ++ T  EV+     +   E   +      +E+S  PK    + I 
Sbjct: 69  LHRPRTLLGQRLNDVVRATLSEVDVVGFCMPADEPVGRGDRFIAEELSRLPKRTPVVAIL 128

Query: 327 TKSD 330
           TK+D
Sbjct: 129 TKTD 132


>gi|24379433|ref|NP_721388.1| ribosomal biogenesis GTPase [Streptococcus mutans UA159]
 gi|24377367|gb|AAN58694.1|AE014939_1 putative GTP-binding protein [Streptococcus mutans UA159]
          Length = 283

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKIS 272
           I +   + +I+G  N GKS+L N LA K +AIV + PG T+    L  + +LE     I 
Sbjct: 117 IQKENLRTMIVGIPNVGKSTLMNRLAGKKIAIVGNKPGVTKGQQWLKSNKNLE-----IL 171

Query: 273 DTAGI 277
           DT GI
Sbjct: 172 DTPGI 176


>gi|117924216|ref|YP_864833.1| GTP-binding protein Era [Magnetococcus sp. MC-1]
 gi|117607972|gb|ABK43427.1| GTP-binding protein Era [Magnetococcus sp. MC-1]
          Length = 303

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + +  R+G+ + I+G  N GKS+  N +  + +AIV+  P TTR  +   L+ +   +  
Sbjct: 1   MTDTFRSGF-VAIVGRPNMGKSTFLNRVMGQKLAIVSPKPQTTRTRVLGALNRDNCQIVF 59

Query: 272 SDTAGIRET-DDIVEKEGIKRTFLEVENADLIL 303
            DT GI +   +++ +  ++      +  D +L
Sbjct: 60  LDTPGIHKAGKNLLNRAMVQTAMQSCQEVDAVL 92


>gi|325275845|ref|ZP_08141705.1| hypothetical protein G1E_20686 [Pseudomonas sp. TJI-51]
 gi|324099020|gb|EGB97006.1| hypothetical protein G1E_20686 [Pseudomonas sp. TJI-51]
          Length = 456

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L  +DV    V+  P TTR V    L ++G  L+++ DT G+
Sbjct: 8   KLAVVGHTNVGKTSLLRTLT-RDVGFGEVSHRPSTTRHVEGARLSVDGEPLLELYDTPGL 66


>gi|320010904|gb|ADW05754.1| GTP-binding protein Era [Streptomyces flavogriseus ATCC 33331]
          Length = 339

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   + G  NAGKS+L NAL  + VAI ++ P TTR  +   +  +   + + DT G
Sbjct: 21  RAGFACFV-GRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRDDAQLILVDTPG 79

Query: 277 IRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEISFPKNIDFIFIGT 327
           + +   ++ +   + ++ T+ EV+       AD  L   +    KE++  K    I I T
Sbjct: 80  LHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKFIVKELAGIKKTPKIAIIT 139

Query: 328 KSDLYST 334
           K+DL  +
Sbjct: 140 KTDLVES 146


>gi|237736602|ref|ZP_04567083.1| ferrous iron transporter B [Fusobacterium mortiferum ATCC 9817]
 gi|229420464|gb|EEO35511.1| ferrous iron transporter B [Fusobacterium mortiferum ATCC 9817]
          Length = 732

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 20/172 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++   G+ N GKS+L NA+A   +  V + PG T +        +G  +++ D  G+   
Sbjct: 3   RLAFTGNPNVGKSALINAIAGSKLK-VGNWPGVTVEKKEATFTYKGEEIELVDLPGVYSL 61

Query: 281 DDIVEKEGIKRTFLEVENADLIL----------------LLKEINSKKEISFPKNIDFIF 324
                +E I R F+  EN D+++                L+KE+     ++     +F  
Sbjct: 62  SPYSLEEKITRDFILEENPDVVINVVDSTNLERNLYLTFLIKELEKPTIMALNLYDEFDK 121

Query: 325 IGTKSDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +  K D+  +  + E     +S+  G G+ EL+++    L+   KK  FS P
Sbjct: 122 LKYKLDIKEFENFMEMKAIPVSALKGTGITELMDRALE-LAKGNKKEKFSFP 172


>gi|229162774|ref|ZP_04290731.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus R309803]
 gi|228620656|gb|EEK77525.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus R309803]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|170038277|ref|XP_001846978.1| mmr1/hsr1 GTP binding protein [Culex quinquefasciatus]
 gi|167881837|gb|EDS45220.1| mmr1/hsr1 GTP binding protein [Culex quinquefasciatus]
          Length = 588

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 15/119 (12%)

Query: 159 GQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN 218
           G W  K+   RS    D+D  +EE  +   + E   D  F   +  +    G L      
Sbjct: 299 GSWQQKINEERS-TPMDVDGDDEEGPEVERTHEEEKDFSF---EERARFQDGVL------ 348

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              I  +G  N GKSSL NA+  K V  V+  PG T+   TI L      V++ D  G+
Sbjct: 349 --TIGCVGFPNVGKSSLLNAVMGKKVVSVSRTPGHTKHFQTIYL---TNTVRLCDCPGL 402


>gi|160879287|ref|YP_001558255.1| ribosome small subunit-dependent GTPase A [Clostridium
           phytofermentans ISDg]
 gi|160427953|gb|ABX41516.1| ribosome small subunit-dependent GTPase A [Clostridium
           phytofermentans ISDg]
          Length = 359

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 14/112 (12%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRDVLTID 261
           +L E +  G   V LG S  GKSSL NALA K++  V++I           T R++++++
Sbjct: 191 QLVEYLTEGTTFVFLGSSGIGKSSLVNALAGKEMMKVSNIREDDDKGRHTTTHRELISLE 250

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
                  V I DT G+RE      + G+  TF ++++       ++   +KE
Sbjct: 251 NG-----VMIIDTPGMRELGLSNVESGLSSTFQDIDSLSEYCKFQDCKHEKE 297


>gi|330466447|ref|YP_004404190.1| gtp-binding proten hflx [Verrucosispora maris AB-18-032]
 gi|328809418|gb|AEB43590.1| gtp-binding proten hflx [Verrucosispora maris AB-18-032]
          Length = 480

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 13/106 (12%)

Query: 205 SHISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLT 259
           S + + K     RN    V I G++NAGKSSL N L    V    A+   +  TTR   T
Sbjct: 237 STVRETKRSRRTRNAVPAVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTTRRATT 296

Query: 260 IDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL 303
                EG +  +SDT G +R     IV  E  + T  E+  ADL++
Sbjct: 297 S----EGRVYTLSDTVGFVRHLPHQIV--EAFRSTLEEIAEADLVV 336


>gi|33862628|ref|NP_894188.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9313]
 gi|33634544|emb|CAE20530.1| GTP-binding protein ERA homolog [Prochlorococcus marinus str. MIT
           9313]
          Length = 316

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L E  R+G+ + ++G  N GKS+L N L  + VAI + +  TTR+ L   +      + +
Sbjct: 9   LPEGYRSGF-VALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAIVTTSEAQMVL 67

Query: 272 SDTAGI 277
            DT GI
Sbjct: 68  VDTPGI 73


>gi|16078668|ref|NP_389487.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221309480|ref|ZP_03591327.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313805|ref|ZP_03595610.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221318729|ref|ZP_03600023.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323000|ref|ZP_03604294.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|81555913|sp|O31743|RBGA_BACSU RecName: Full=Ribosome biogenesis GTPase A
 gi|33358156|pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
 gi|2633977|emb|CAB13478.1| ribosome biogenesis GTPase A [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 282

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     + +   G  +++ DT GI
Sbjct: 122 RALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGI 175


>gi|308173567|ref|YP_003920272.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens DSM 7]
 gi|307606431|emb|CBI42802.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens DSM 7]
 gi|328553500|gb|AEB23992.1| GTPase YlqF [Bacillus amyloliquefaciens TA208]
 gi|328911708|gb|AEB63304.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens LL3]
          Length = 282

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 13/90 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           SSKE+L D             + K   I     + +I+G  N GKS+L N LAKK++A  
Sbjct: 99  SSKELLKD----------KFDKMKAKGIRPRAIRALIIGIPNVGKSTLINRLAKKNIAKT 148

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            D PG T     + +   G  +++ DT GI
Sbjct: 149 GDRPGITTSQQWVKV---GKELELLDTPGI 175


>gi|291484156|dbj|BAI85231.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. natto
           BEST195]
          Length = 282

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     + +   G  +++ DT GI
Sbjct: 122 RALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGI 175


>gi|193212441|ref|YP_001998394.1| GTP-binding proten HflX [Chlorobaculum parvum NCIB 8327]
 gi|193085918|gb|ACF11194.1| GTP-binding proten HflX [Chlorobaculum parvum NCIB 8327]
          Length = 450

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG-IR 278
           ++ ++G++NAGKS+L NAL  +  A   +    T D  T  L+L    LV +SDT G IR
Sbjct: 212 RVALVGYTNAGKSTLMNALCPEAEAYAENRLFATLDTKTRRLELRINKLVLLSDTVGFIR 271

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +    +  E  K T  EV  AD +L
Sbjct: 272 KLPHTL-VESFKSTLDEVLQADFLL 295


>gi|154686021|ref|YP_001421182.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens FZB42]
 gi|154351872|gb|ABS73951.1| YlqF [Bacillus amyloliquefaciens FZB42]
          Length = 282

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 13/90 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           SSKE+L D             + K   I     + +I+G  N GKS+L N LAKK++A  
Sbjct: 99  SSKELLKD----------KFDKMKAKGIRPRAIRALIIGIPNVGKSTLINRLAKKNIAKT 148

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            D PG T     + +   G  +++ DT GI
Sbjct: 149 GDRPGITTSQQWVKV---GKELELLDTPGI 175


>gi|149183640|ref|ZP_01862057.1| ribosomal biogenesis GTPase [Bacillus sp. SG-1]
 gi|148848657|gb|EDL62890.1| ribosomal biogenesis GTPase [Bacillus sp. SG-1]
          Length = 287

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINRLAKKNIAKTGNTPGVTKAQQWIKV---GKEMELLDTPGI 175


>gi|160900445|ref|YP_001566027.1| GTP-binding proten HflX [Delftia acidovorans SPH-1]
 gi|160366029|gb|ABX37642.1| GTP-binding proten HflX [Delftia acidovorans SPH-1]
          Length = 404

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAG- 276
           + I ++G++NAGKS+LFNAL K   A   D    T D  T  L L      V +SDT G 
Sbjct: 202 FNISLVGYTNAGKSTLFNALVKAR-AYAADQLFATLDTTTRQLYLNEAQQSVSLSDTVGF 260

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           IR+    +  +  + T  E  +ADL+L + + ++    +FP+ I  +
Sbjct: 261 IRDLPHGL-VDAFQATLQEAIDADLLLHVVDASNP---NFPEQIQQV 303


>gi|52141650|ref|YP_085179.1| ribosomal biogenesis GTPase [Bacillus cereus E33L]
 gi|218904967|ref|YP_002452801.1| GTPase family protein [Bacillus cereus AH820]
 gi|225865819|ref|YP_002751197.1| GTPase family protein [Bacillus cereus 03BB102]
 gi|228916475|ref|ZP_04080041.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228928886|ref|ZP_04091918.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935152|ref|ZP_04097979.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228947557|ref|ZP_04109847.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229092880|ref|ZP_04224014.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-42]
 gi|229123352|ref|ZP_04252556.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 95/8201]
 gi|229186078|ref|ZP_04313247.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus BGSC 6E1]
 gi|254721976|ref|ZP_05183765.1| ribosomal biogenesis GTPase [Bacillus anthracis str. A1055]
 gi|301055328|ref|YP_003793539.1| GTP-binding protein HSR1-related protein [Bacillus anthracis CI]
 gi|51975119|gb|AAU16669.1| conserved hypothetical protein; GTPase family [Bacillus cereus
           E33L]
 gi|218539759|gb|ACK92157.1| GTPase family protein [Bacillus cereus AH820]
 gi|225788163|gb|ACO28380.1| GTPase family protein [Bacillus cereus 03BB102]
 gi|228597254|gb|EEK54905.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus BGSC 6E1]
 gi|228660128|gb|EEL15764.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 95/8201]
 gi|228690502|gb|EEL44285.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-42]
 gi|228812077|gb|EEM58408.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228824517|gb|EEM70322.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830693|gb|EEM76298.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228843054|gb|EEM88136.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300377497|gb|ADK06401.1| GTP-binding protein HSR1-related protein [Bacillus cereus biovar
           anthracis str. CI]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|13476443|ref|NP_108013.1| GTP-binding protein Era [Mesorhizobium loti MAFF303099]
 gi|21263601|sp|Q985A5|ERA_RHILO RecName: Full=GTPase Era
 gi|14027204|dbj|BAB54158.1| GTP-binding protein; Era [Mesorhizobium loti MAFF303099]
          Length = 310

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L    V+IVT    TTR ++      +   +   DT GI +  
Sbjct: 21  VALIGAPNAGKSTLVNQLVGAKVSIVTHKVQTTRAIVRGIATHDNAQIVFVDTPGIFKPK 80

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++   +   +   ++AD++LLL
Sbjct: 81  RRLDTAMVTTAWGGAKDADIVLLL 104


>gi|310658631|ref|YP_003936352.1| GTP-binding protein hflx [Clostridium sticklandii DSM 519]
 gi|308825409|emb|CBH21447.1| GTP-binding protein hflX [Clostridium sticklandii]
          Length = 432

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 32/181 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVK------ISD 273
           + ++G++N+GKS+L N L +       D     +D+L  T+D+ L   ++       I+D
Sbjct: 208 VALVGYTNSGKSTLLNKLIQSHREYSADKDVFVKDMLFATLDVSLRKAILPSNKEYLITD 267

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID------------ 321
           T G          E  K T  EV  AD  LLL  ++S  E  F   ID            
Sbjct: 268 TVGFVSDLPHYLVEAFKATLEEVSYAD--LLLHVVDSSNE-HFNLQIDTTLGVLKEIGAA 324

Query: 322 ---FIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               I++  K+D  + Y  +Y        IS+ TG   E+L+ KI+  +++  KK+   I
Sbjct: 325 DKPMIYVFNKADKVN-YELDYKPKDEYVFISAKTGYNNEQLLQKIECHINSNLKKVKLLI 383

Query: 374 P 374
           P
Sbjct: 384 P 384


>gi|294101892|ref|YP_003553750.1| ribosome biogenesis GTP-binding protein YsxC [Aminobacterium
           colombiense DSM 12261]
 gi|293616872|gb|ADE57026.1| ribosome biogenesis GTP-binding protein YsxC [Aminobacterium
           colombiense DSM 12261]
          Length = 197

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV--LTIDLDLEGYLV 269
           +  +G SN GKS L NAL ++ +A V   PG TR V    I+ +++ +LV
Sbjct: 27  VAFVGRSNVGKSMLLNALMERKLAHVGSTPGKTRSVNFYKIEAEVDFFLV 76


>gi|218515109|ref|ZP_03511949.1| GTP-binding protein Era [Rhizobium etli 8C-3]
          Length = 272

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 24  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++  +   +   ++ADLI+LL
Sbjct: 84  RRLDRAMVTSAWGGAKDADLIMLL 107


>gi|217961258|ref|YP_002339826.1| ribosomal biogenesis GTPase [Bacillus cereus AH187]
 gi|229140481|ref|ZP_04269036.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
           BDRD-ST26]
 gi|229157414|ref|ZP_04285492.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
           4342]
 gi|229197948|ref|ZP_04324663.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1293]
 gi|217065992|gb|ACJ80242.1| GTPase family protein [Bacillus cereus AH187]
 gi|228585527|gb|EEK43630.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1293]
 gi|228626141|gb|EEK82890.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
           4342]
 gi|228643042|gb|EEK99318.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
           BDRD-ST26]
 gi|324327735|gb|ADY22995.1| GTPase YlqF [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|197334668|ref|YP_002156885.1| GTP-binding protein Era [Vibrio fischeri MJ11]
 gi|197316158|gb|ACH65605.1| GTP-binding protein Era [Vibrio fischeri MJ11]
          Length = 322

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  ++ +D D + Y     DT G+   
Sbjct: 31  IAIVGRPNVGKSTLLNQILGQKISITSRKPQTTRHRIMGVDTDGD-YQAIYVDTPGLH-- 87

Query: 281 DDIVEKEGIKRTFLEVENADL 301
             I EK  I R      N+ L
Sbjct: 88  --IEEKRAINRLMNRAANSSL 106


>gi|297171260|gb|ADI22267.1| GTPase [uncultured Gemmatimonadales bacterium HF0200_36I24]
 gi|297171355|gb|ADI22359.1| GTPase [uncultured nuHF2 cluster bacterium HF0500_02A10]
          Length = 300

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           ++ R GY I + G  N+GKS+L N L  + ++IVT    TT   +T     +       D
Sbjct: 4   QVSRAGY-IALAGLPNSGKSTLMNRLVGQKISIVTPKAQTTWQRITGIRTTDNEQGIFLD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           T G+    D+++K  ++ +   +  AD+++L+
Sbjct: 63  TPGLLLAKDLLQKGMLEESLEAISEADVVVLI 94


>gi|319784503|ref|YP_004143979.1| GTP-binding protein Era [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170391|gb|ADV13929.1| GTP-binding protein Era [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 308

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L    V+IVT    TTR ++      +   +   DT GI +  
Sbjct: 19  VALIGAPNAGKSTLVNQLVGAKVSIVTHKVQTTRAIVRGIATHDNAQIVFVDTPGIFKPK 78

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++   +   +   ++AD++LLL
Sbjct: 79  RRLDTAMVTTAWGGAKDADIVLLL 102


>gi|315222585|ref|ZP_07864474.1| putative ferrous iron transport protein B [Streptococcus anginosus
           F0211]
 gi|315188271|gb|EFU21997.1| putative ferrous iron transport protein B [Streptococcus anginosus
           F0211]
          Length = 673

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I +LG  N+GKS+LFN L   +   V + PG T +    +   +G   KI D  G     
Sbjct: 6   IALLGQPNSGKSTLFNGLTGANQH-VGNWPGKTVEKKEGEFSYKGIDYKIVDLPGAYGLS 64

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
              E+E I R ++    ADLI ++
Sbjct: 65  ANSEEEVITREYIASGEADLIAVI 88


>gi|317132159|ref|YP_004091473.1| GTP-binding protein Era [Ethanoligenens harbinense YUAN-3]
 gi|315470138|gb|ADU26742.1| GTP-binding protein Era [Ethanoligenens harbinense YUAN-3]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           + I+G  N GKS+L NA+  + +AIV+  P TTR+ +T
Sbjct: 9   VAIIGRPNVGKSTLLNAILGEKIAIVSPKPQTTRNKIT 46


>gi|225376265|ref|ZP_03753486.1| hypothetical protein ROSEINA2194_01903 [Roseburia inulinivorans DSM
           16841]
 gi|225211911|gb|EEG94265.1| hypothetical protein ROSEINA2194_01903 [Roseburia inulinivorans DSM
           16841]
          Length = 732

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 5/102 (4%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + + + + + GE+I    KI + G+ N GK++LFNAL   +   V + PG T  V   + 
Sbjct: 1   METDLHRSRKGELIM-AVKIALAGNPNCGKTTLFNALTGSN-QFVGNWPGVT--VEKKEG 56

Query: 263 DLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            L+G+  V I D  GI        +E + R +L  E  D IL
Sbjct: 57  KLKGHKDVVIMDLPGIYSLSPYTLEEVVARNYLIAERPDAIL 98


>gi|119511690|ref|ZP_01630795.1| GTP-binding protein Era [Nodularia spumigena CCY9414]
 gi|119463675|gb|EAW44607.1| GTP-binding protein Era [Nodularia spumigena CCY9414]
          Length = 324

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ I I+G  N GKS+L N L  + +AI + I  TTR+ L   L      +   DT G
Sbjct: 31  KSGF-IGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGILTTPEAQLIFVDTPG 89

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +    + +  +K     +++ D++L +
Sbjct: 90  IHKPHHQLGQVLVKNARNAIDSVDVVLFV 118


>gi|71907658|ref|YP_285245.1| GTP-binding protein Era [Dechloromonas aromatica RCB]
 gi|71847279|gb|AAZ46775.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Dechloromonas aromatica RCB]
          Length = 294

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR+GY I I+G  N GKS+L N L  + ++IV+    TTR  +T  L  +       DT 
Sbjct: 4   IRSGY-IAIVGRPNVGKSTLLNRLVGEKISIVSRKAQTTRHRITGILTNDDAQFVFVDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVEN-ADLILLLKEI---NSKKEIS---FPKNIDFIFIGTK 328
           G +          + R   +  N  D++L L E    ++K +      PK+   I +  K
Sbjct: 63  GFQTKFSNALNRAMNRGVTQTLNDVDVVLFLIEAGRYDAKDKAVVRLLPKDRPVILVVNK 122

Query: 329 SD----------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +D            +  + ++D+     IS+  G+  +EL+ + +  L N+    P    
Sbjct: 123 TDQIKDRSSLFPFLAEVSADHDYAAVVPISAAKGKQTDELLAEARKHLPNEGLMFPEDEL 182

Query: 375 SHKRHLYHLSQTVR 388
           + K   +  S+ +R
Sbjct: 183 TDKSERFLASEYIR 196


>gi|84500560|ref|ZP_00998809.1| GTP-binding protein Era [Oceanicola batsensis HTCC2597]
 gi|84391513|gb|EAQ03845.1| GTP-binding protein Era [Oceanicola batsensis HTCC2597]
          Length = 301

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 30/182 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +  + ++ +  +V + DT 
Sbjct: 4   RAGF-VALIGEPNAGKSTLTNRMVGAKVSIVTHKVQTTRARIRGVAIEGDSQIVFV-DTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL------------------LKEINSKKEISFP 317
           G+ +    +++  +   +  V +ADL +L                  L+++   + ++  
Sbjct: 62  GLFQPRRRLDRAMVAAAWSGVADADLTVLLVEAHRGVTPGVEKILETLQQMAKGRRVALA 121

Query: 318 KN-IDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            N ID +     +     L + Y  E   +IS+  G G+++L    K  L+ +  + P+ 
Sbjct: 122 INKIDRVEAKQLLDLTERLNAAYPFEKTFMISAEKGHGVQDL----KEWLAAEMPESPWL 177

Query: 373 IP 374
            P
Sbjct: 178 YP 179


>gi|325479288|gb|EGC82384.1| hypothetical protein HMPREF9290_1474 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 442

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 112/240 (46%), Gaps = 38/240 (15%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
           Q I+++  +   +E  LD     D    S K  + D++F   D+S  +S+          
Sbjct: 10  QAIERIKKVYKNMEKVLD--SLPDAFPKSMKNQIKDLVFDDEDLSKLMSELDH----HRP 63

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIR 278
            KI ++G +  GKSSL NA+  K +A V D+   T+     D +D    L++I DT GI 
Sbjct: 64  PKIFLIGRTGVGKSSLINAIGGKYLAPVNDVYAHTKFANKYDYVDNGKVLMEILDTRGIA 123

Query: 279 ET---------DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS 329
           E+         +D+++KE    TFL     D+ + ++  + + +I+   ++DF+      
Sbjct: 124 ESIAIDNKISAEDMIKKE--VNTFL----PDVCIFMQNASHRDDIN--SDVDFL------ 169

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                 +E+Y    ++     +  +INK+  +  ++FK  P   P  K +  ++++ ++Y
Sbjct: 170 ---REISEDYRK--NNGVDLPIITVINKVDELAPSRFKD-PKEYPISKNN--NINEVIKY 221


>gi|310828430|ref|YP_003960787.1| hypothetical protein ELI_2843 [Eubacterium limosum KIST612]
 gi|308740164|gb|ADO37824.1| hypothetical protein ELI_2843 [Eubacterium limosum KIST612]
          Length = 304

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 24/168 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTA 275
           ++G+ I I+G  N GKS+L N++  + + I  + P TTR+ +  I  D +  +V I DT 
Sbjct: 12  KSGF-ISIIGRPNVGKSTLLNSIMGEKLVITANKPQTTRNAIRCIHTDADSQMVFI-DTP 69

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIG 326
           G+ +  + +    +K     + + D++L L E   +          +++  +    + I 
Sbjct: 70  GMHKPKNKLGAFMLKSAEDTISDVDVVLFLVEPEDRIGPGDQYILDKLAGSRTPVLLIIN 129

Query: 327 -----TKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSIL 362
                 K +L  T     D+        +S++ G+G++EL+  IK  L
Sbjct: 130 KIDTVPKEELLKTIAAYQDYTFLDSIIPVSAWNGDGVQELLAAIKKHL 177


>gi|296423820|ref|XP_002841450.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637690|emb|CAZ85641.1| unnamed protein product [Tuber melanosporum]
          Length = 544

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GKSS+ N L KK V  V  IPG T+    I L    +L+       
Sbjct: 276 RKQISVGLIGYPNTGKSSVINTLRKKKVCTVAPIPGETKVWQYITLMRRIFLIDCPGIVP 335

Query: 277 IRETDDIVEKEGIKRTFLEVEN 298
              TD   E + + R  + VEN
Sbjct: 336 PSATDS--ETDILLRGVVRVEN 355


>gi|288817817|ref|YP_003432164.1| putative GTP-binding protein [Hydrogenobacter thermophilus TK-6]
 gi|288787216|dbj|BAI68963.1| putative GTP-binding protein [Hydrogenobacter thermophilus TK-6]
 gi|308751415|gb|ADO44898.1| ribosome biogenesis GTP-binding protein YsxC [Hydrogenobacter
           thermophilus TK-6]
          Length = 186

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +V +G SN GKSSL N L  + VA V+  PG TR +      LEG  +K+ D  G
Sbjct: 21  VVFVGRSNVGKSSLINMLVGEPVARVSKEPGRTRSINA--FLLEGR-IKLVDVPG 72


>gi|253702353|ref|YP_003023542.1| ferrous iron transporter B [Geobacter sp. M21]
 gi|251777203|gb|ACT19784.1| ferrous iron transport protein B [Geobacter sp. M21]
          Length = 743

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G+ N+GKS+L NA+A   +  V +  G T +     L+  G  +K+ D  G     
Sbjct: 32  VAVAGNPNSGKSTLINAIAGTRLH-VGNWAGVTVEKKEAQLEYAGRKIKLVDLPGTYSLS 90

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
              ++E + R +L  E  DLI+
Sbjct: 91  PYTQEEIVARDYLVHERPDLII 112


>gi|251782422|ref|YP_002996724.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391051|dbj|BAH81510.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 282

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I +   + +I+G  N GKS+L N LA K +A+V + PG T+    +  + E   ++I DT
Sbjct: 117 IQKETLRTMIIGIPNVGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKE---LEILDT 173

Query: 275 AGI 277
            GI
Sbjct: 174 PGI 176


>gi|254512246|ref|ZP_05124313.1| GTP-binding protein Era [Rhodobacteraceae bacterium KLH11]
 gi|221535957|gb|EEE38945.1| GTP-binding protein Era [Rhodobacteraceae bacterium KLH11]
          Length = 302

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 30/182 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +  + ++ E  LV + DT 
Sbjct: 4   RAGF-IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGEAQLVFV-DTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL------------------LKEINSKKEISFP 317
           G+ +    +++  +   +    +AD+++L                  L+EI   + I+  
Sbjct: 62  GLFKPRRRLDRAMVAAAWGGAADADVVVLMVEAHRGITEGVERILEGLEEIGQGRTIALA 121

Query: 318 KN-IDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            N ID +     +   SDL + Y      +IS+  G G+++L    +  L+++  + P+ 
Sbjct: 122 INKIDKVPSEKLLALTSDLNARYPFAETFMISAEKGHGVDDL----RQWLASELPEGPWL 177

Query: 373 IP 374
            P
Sbjct: 178 YP 179


>gi|242012553|ref|XP_002426997.1| GTP-binding protein-invertebrate, putative [Pediculus humanus
           corporis]
 gi|212511226|gb|EEB14259.1| GTP-binding protein-invertebrate, putative [Pediculus humanus
           corporis]
          Length = 547

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 43/88 (48%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSSL N L +     V  +PG TR +  + LD +  L+     A
Sbjct: 253 IKTSIRVGVVGLPNVGKSSLINTLKRNRSCKVGAVPGITRSLQEVQLDSKIKLLDCPGLA 312

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303
            +  +D     + I +T    E A++++
Sbjct: 313 FVSTSDPHAALKNIIKTNDYTEAAEMVI 340


>gi|170017070|ref|YP_001727989.1| GTP-binding protein Era [Leuconostoc citreum KM20]
 gi|226741222|sp|B1MYE3|ERA_LEUCK RecName: Full=GTPase Era
 gi|169803927|gb|ACA82545.1| GTP-binding protein Era [Leuconostoc citreum KM20]
          Length = 303

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   V   DT G+ +  
Sbjct: 11  VAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDNAQVVFIDTPGVHKPQ 70

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +    +K  F  +  AD I  +
Sbjct: 71  NSLGNFMVKSAFSALHEADAIWFV 94


>gi|157692284|ref|YP_001486746.1| ribosomal biogenesis GTPase [Bacillus pumilus SAFR-032]
 gi|157681042|gb|ABV62186.1| GTP-binding protein [Bacillus pumilus SAFR-032]
          Length = 282

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     + +   G  +++ DT GI
Sbjct: 122 RALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKEMELLDTPGI 175


>gi|310778113|ref|YP_003966446.1| ferrous iron transport protein B [Ilyobacter polytropus DSM 2926]
 gi|309747436|gb|ADO82098.1| ferrous iron transport protein B [Ilyobacter polytropus DSM 2926]
          Length = 737

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI   G+ N GKS+L N++A   +  V + PG T +    + + EG  +K+ D  G+   
Sbjct: 3   KIAFAGNPNVGKSALINSIAGSKLK-VGNWPGVTVEKKEAEFEFEGKKIKMIDLPGVYSL 61

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
                +E I R ++  EN D+++
Sbjct: 62  SPYTIEEKITRDYILNENPDVVI 84


>gi|301103290|ref|XP_002900731.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262101486|gb|EEY59538.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 315

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 29/166 (17%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI----RET 280
           +G  N GKSSL  AL+      V + P TTR +    +  EG   +I+DT G+     ET
Sbjct: 152 VGAPNVGKSSLVRALSTASPE-VANYPFTTRGITMGHIFEEGISYQIADTPGLIFRSDET 210

Query: 281 DDIVEKEGI---KRTFLEV------------ENADLILLLKEINSKKEISFPKNIDFIFI 325
            + +EK  I   ++T   +              AD +LL  E+  +   + P+++ +I I
Sbjct: 211 RNAIEKLAIAMMEKTQASIGFVFDPTGSSGTPTADQVLLRDELRHRVLKARPEHM-WIDI 269

Query: 326 GTKSDLYS-TYTEEYDHL-------ISSFTGEGLEELINKIKSILS 363
            +KSD  S       D L       +S+ T EGL EL ++I+ +L+
Sbjct: 270 ISKSDQPSDDLASLKDRLGPSPFFSVSAQTNEGLVELGDEIRRLLT 315


>gi|261886518|ref|ZP_06010557.1| GTP-binding protein Era [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 270

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 12/123 (9%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR---DVLTIDLDLEGYLVKIS 272
           +++G+ I ++G +NAGKSSL N L  + +++V+     TR   + + +  D +   +   
Sbjct: 1   MKSGF-ISLIGRTNAGKSSLLNYLLNEKISMVSHKQNATRRKINGIVMHKDSQAIFI--- 56

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNIDFIFIGT 327
           DT G+ E++  + K  ++     + + DL+L +  +     N KK ++  K+   +   T
Sbjct: 57  DTPGLHESNKTMNKLMVEAAIKSIGDCDLLLFVASVFDNIENYKKFLNLKKDAPHLIAIT 116

Query: 328 KSD 330
           K D
Sbjct: 117 KID 119


>gi|299822634|ref|ZP_07054520.1| ribosome biogenesis GTP-binding protein YlqF [Listeria grayi DSM
           20601]
 gi|299816163|gb|EFI83401.1| ribosome biogenesis GTP-binding protein YlqF [Listeria grayi DSM
           20601]
          Length = 289

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           L +K    +  ++G     IR     +ILG  N GKS+L N LAKK++A   + PG T+ 
Sbjct: 102 LLMKEKFDNWKTKGMKPRAIR----AMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKA 157

Query: 257 VLTIDLDLEGYLVKISDTAGI 277
              I ++     +++ DT GI
Sbjct: 158 QQWIKVEKS---LELLDTPGI 175


>gi|144899203|emb|CAM76067.1| GTP-binding protein, HSR1 [Magnetospirillum gryphiswaldense MSR-1]
          Length = 437

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 28/174 (16%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y IV L G++NAGKS+LFN L + +V +  D+   T D     L L  G  + +SDT
Sbjct: 204 RVPYPIVALVGYTNAGKSTLFNRLTQSEV-LAKDMLFATLDPTMRGLKLPSGRQIILSDT 262

Query: 275 AG-------------------IRETDDIVEKEGIKRTFLEVENADLILLLKEIN-----S 310
            G                   + E D +V    +     E + +D+ L+LKE+       
Sbjct: 263 VGFISDLPHELVAAFRATLEEVLEADVVVHVRDMAHPDTEAQASDVELVLKELGLGDMVD 322

Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILS 363
           +  +     ID +  G +  + +    +   L IS+ TG G++  +  I   LS
Sbjct: 323 RGLVEALNKIDLLPEGGREGVVNQAARKPTALPISALTGAGVDAFLACIDEKLS 376


>gi|159039359|ref|YP_001538612.1| GTP-binding protein Era [Salinispora arenicola CNS-205]
 gi|157918194|gb|ABV99621.1| GTP-binding protein Era [Salinispora arenicola CNS-205]
          Length = 300

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G  NAGKS+L NA+  + +AI +  P TTR V+   L      + + DT G+
Sbjct: 19  VGRPNAGKSTLTNAIVGQKIAITSSKPQTTRHVIRAVLHRPDSQLVLVDTPGL 71


>gi|157875196|ref|XP_001686001.1| GTPase protein [Leishmania major strain Friedlin]
 gi|68129074|emb|CAJ06657.1| putative ras-like small GTPases [Leishmania major strain Friedlin]
          Length = 567

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 7/78 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GKSS+ NAL +K V  V ++PG T     ++L  +   +++ D  G
Sbjct: 300 RKAIVVGVIGYPNVGKSSIINALKRKHVVGVGNMPGFTTGNTEVELRSD---IRVMDCPG 356

Query: 277 I----RETDDIVEKEGIK 290
           +     ++ D+V +  I+
Sbjct: 357 VVSPGEDSGDVVLRNAIR 374


>gi|85057723|ref|YP_456639.1| GTP-binding protein [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789828|gb|ABC65560.1| GTP-binding protein [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 295

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           K +I+G  N GKS+L N+ A+K V    ++ GTT+ +  ID+      ++  DT G+
Sbjct: 127 KAMIVGTPNVGKSTLINSFAQKKVLKTANLAGTTKRIQWIDIAKPN--IQFLDTPGV 181


>gi|39938764|ref|NP_950530.1| hypothetical protein PAM_278 [Onion yellows phytoplasma OY-M]
 gi|39721873|dbj|BAD04363.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M]
 gi|152002475|dbj|BAF73499.1| predicted GTPases [Onion yellows phytoplasma OY-W]
          Length = 295

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           K +I+G  N GKS+L N+ A+K V    ++ GTT+ +  ID+      ++  DT G+
Sbjct: 127 KAMIVGTPNVGKSTLINSFAQKKVLKTANLAGTTKRIQWIDIAKPN--IQFLDTPGV 181


>gi|308233978|ref|ZP_07664715.1| GTP-binding protein Era [Atopobium vaginae DSM 15829]
          Length = 297

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  + GKS+L NA     +AI + +  TTR  +   L  +   + I DT G+ +  
Sbjct: 7   VSLVGRPSVGKSTLLNACYGGKIAITSRVAQTTRRRMRAVLTDDSSQIVIVDTPGLHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D + KE  +    E+++ D++  L  I++ +E+
Sbjct: 67  DALGKELNQTALAELKDVDVVAHL--IDASQEV 97


>gi|296114949|ref|ZP_06833595.1| GTP-binding protein hflX [Gluconacetobacter hansenii ATCC 23769]
 gi|295978507|gb|EFG85239.1| GTP-binding protein hflX [Gluconacetobacter hansenii ATCC 23769]
          Length = 436

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 23/176 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG----- 276
           + ++G++NAGKS+LFNAL    V     +  T    +       G  + +SDT G     
Sbjct: 208 VALVGYTNAGKSTLFNALTGASVYAQDQLFATLDPTMRGIRLPSGRQIILSDTVGFISDL 267

Query: 277 --------------IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322
                         + E D I+            + AD++ +L+ +     I        
Sbjct: 268 PTELIAAFRATLEEVAEADIILHVRDASHPETSAQRADVVEVLEGMAHSGTIEPDWQSRV 327

Query: 323 IFIGTKSDLY----STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           I +  K+DL     +        +IS+ TG+GL +L+  I   L++  + + + +P
Sbjct: 328 IEVLNKADLMGGRDAVGARPGAIVISAITGDGLPDLLAAIDERLTHAMELVRYRVP 383


>gi|293394830|ref|ZP_06639120.1| GTP-binding protein Era [Serratia odorifera DSM 4582]
 gi|291422581|gb|EFE95820.1| GTP-binding protein Era [Serratia odorifera DSM 4582]
          Length = 302

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 37/193 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  + + +  EG Y     DT G+   
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRI-MGIHTEGPYQAIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I EK  I R             L    +   I   + + F+  GT       +T + +
Sbjct: 68  --IEEKRAINR-------------LMNRAASSSIGDVELVIFVVEGT------NWTADDE 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++         L  INK+ ++ ++K K LP        H+  LSQ + +L++  ++ E
Sbjct: 107 MVVNKLRSLKCPVLLAINKVDNV-ADKGKLLP--------HIAFLSQQMNFLDVVPISAE 157

Query: 398 KDCGLDIIAENLR 410
           K   +D IA  +R
Sbjct: 158 KGMNVDTIAGIVR 170


>gi|259500646|ref|ZP_05743548.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           DSM 13335]
 gi|315653519|ref|ZP_07906440.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           ATCC 55195]
 gi|259168030|gb|EEW52525.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           DSM 13335]
 gi|315489210|gb|EFU78851.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           ATCC 55195]
          Length = 281

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 8/75 (10%)

Query: 208 SQGKLGEIIRNG-----YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           ++ K+ +II  G      K+ I G  N GKS++ N L  ++  IV D PG TR    +  
Sbjct: 107 TKDKVDKIIAKGAKEPVIKVAIAGIPNCGKSTIINRLVGRNATIVGDKPGVTRGQNWLKT 166

Query: 263 DLEGYLVKISDTAGI 277
           D     ++I DT GI
Sbjct: 167 DTN---IQILDTPGI 178


>gi|221482307|gb|EEE20662.1| GTP-binding protein, putative [Toxoplasma gondii GT1]
          Length = 641

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ NAL  K V     IPG TR    + L    YL+   D  G
Sbjct: 340 RKHVSVGFIGYPNVGKSSIINALRSKQVCRAAPIPGETRVWQYVALTKRLYLI---DCPG 396

Query: 277 I 277
           I
Sbjct: 397 I 397


>gi|217077039|ref|YP_002334755.1| GTP-binding protein [Thermosipho africanus TCF52B]
 gi|217036892|gb|ACJ75414.1| GTP-binding protein [Thermosipho africanus TCF52B]
          Length = 358

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 22/151 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+I+G +N GKSSL +A  K+   I +  PGTT  ++   +    +   I DT GI   D
Sbjct: 154 ILIVGVTNVGKSSLLSAFTKEHPTI-SPFPGTTLGIVKRKV----FNTYIYDTPGILTND 208

Query: 282 DIVE------------KEGIKRTFLEVENADLILLLKEINSKKEISF---PKNIDFIFIG 326
            +++               + R   +++ +  IL+      K E+ F    K I  IF  
Sbjct: 209 RVIDLLSPECQAKILKTNNLTRKTFKIDQSRAILV--SAFCKIEVEFDGDKKPIFQIFAP 266

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            K   + T +E  D LI    G+ L+    K
Sbjct: 267 EKVTFHETKSERADQLIHQRAGDLLQPPCKK 297


>gi|168184648|ref|ZP_02619312.1| GTP-binding protein [Clostridium botulinum Bf]
 gi|237795878|ref|YP_002863430.1| ribosomal biogenesis GTPase [Clostridium botulinum Ba4 str. 657]
 gi|182672284|gb|EDT84245.1| GTP-binding protein [Clostridium botulinum Bf]
 gi|229262006|gb|ACQ53039.1| GTP-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 292

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++++G  N GKSS  N +AK  +A V D PG T+    I   ++   +++ DT G+
Sbjct: 122 RVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQWIKTKID---IELMDTPGV 175


>gi|154337503|ref|XP_001564984.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134062023|emb|CAM45109.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1000

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           ++V++G + AGKSSL NAL  + VA  + +P TTR +
Sbjct: 253 EVVLVGRACAGKSSLLNALLGQQVAKTSSMPNTTRKI 289


>gi|52840380|ref|YP_094179.1| ribosome biogenesis GTP-binding protein YsxC [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|148358283|ref|YP_001249490.1| GTP binding protein EngB [Legionella pneumophila str. Corby]
 gi|296105634|ref|YP_003617334.1| GTP binding protein EngB [Legionella pneumophila 2300/99 Alcoy]
 gi|81603580|sp|Q5ZZ86|ENGB_LEGPH RecName: Full=Probable GTP-binding protein EngB
 gi|166225963|sp|A5I9U4|ENGB_LEGPC RecName: Full=Probable GTP-binding protein EngB
 gi|52627491|gb|AAU26232.1| GTP binding protein EngB [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|148280056|gb|ABQ54144.1| GTP binding protein EngB [Legionella pneumophila str. Corby]
 gi|295647535|gb|ADG23382.1| GTP binding protein EngB [Legionella pneumophila 2300/99 Alcoy]
          Length = 200

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 42/174 (24%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +GY++   G SNAGKSS  N L   K++A  +  PG T+ +    LD +  LV +     
Sbjct: 25  SGYEVAFAGRSNAGKSSALNCLTNNKNLARTSKTPGRTQLINLFSLDEQRRLVDLPGYGY 84

Query: 277 IRETDDI-VEKEGIKRTFLEVENA--DLILLLKEINSKKEISFP-KNIDFIFIG------ 326
            +   ++ +E +     +LE       LILL+       ++  P K++D I +       
Sbjct: 85  AKVAMEVKLEWQKNLAHYLEARQCLRGLILLM-------DVRHPLKDLDQILVNWALHRE 137

Query: 327 -------TKSDLYS------------TYTEEYDHLI-----SSFTGEGLEELIN 356
                  TK+D  S             Y E  +HL+     SS   +G+EELI+
Sbjct: 138 LPVHILLTKADKLSRSEVKNAVLKVRQYYELAEHLVSVQAFSSVKKDGVEELIS 191


>gi|282897000|ref|ZP_06305002.1| Small GTP-binding protein, era -like protein [Raphidiopsis brookii
           D9]
 gi|281197652|gb|EFA72546.1| Small GTP-binding protein, era -like protein [Raphidiopsis brookii
           D9]
          Length = 308

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ I I+G  N GKS+L N L  + +AI + +  TTR+ L   L  E   +   DT G
Sbjct: 15  KSGF-IGIIGRPNVGKSTLMNQLIGQKIAITSPVAQTTRNRLRGILTREKAQLIFVDTPG 73

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +    + +  ++   + + + D++L +
Sbjct: 74  IHKPHHPLGEVLVQNAKIAITSVDVVLFV 102


>gi|237746715|ref|ZP_04577195.1| GTP-binding protein Era [Oxalobacter formigenes HOxBLS]
 gi|229378066|gb|EEO28157.1| GTP-binding protein Era [Oxalobacter formigenes HOxBLS]
          Length = 299

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R GY I I+G  N GKS+L N L    V+I +    TTR  ++ I  D +   + I DT 
Sbjct: 10  RCGY-IAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRIMGIQTDDDAQFIYI-DTP 67

Query: 276 GIRETDDIVEKEGIKRTFLE-VENADLILLLKEINSKKEIS------FPKNIDFIFIGTK 328
           G +   +    + + RT  + +  AD+IL + +     +         P+N+  I +  K
Sbjct: 68  GFQTRYNNALNKNLNRTVRDTLSTADVILFVVDAGVYGQADQQVLDLIPENVPTILVVNK 127

Query: 329 SD 330
           +D
Sbjct: 128 TD 129


>gi|257076093|ref|ZP_05570454.1| GTP binding protein [Ferroplasma acidarmanus fer1]
          Length = 360

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G+ N GKSSL NAL  K  + V +   TT  V+   L+  G  ++I D  GI   D
Sbjct: 62  MALVGYPNVGKSSLLNALTNKK-STVGNFEFTTLTVIPGTLNYNGAQIQILDLPGI--ID 118

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEINSK 311
           +     G  R  +  + N DLI+L+ +I  K
Sbjct: 119 NAALGAGRGREIISTIRNVDLIVLVTDIQLK 149


>gi|145223780|ref|YP_001134458.1| GTP-binding protein, HSR1-related [Mycobacterium gilvum PYR-GCK]
 gi|145216266|gb|ABP45670.1| GTP-binding protein, HSR1-related protein [Mycobacterium gilvum
           PYR-GCK]
          Length = 1211

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 13/132 (9%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           L    + S+H+S+      + + + I   G + AGKS+L +A  + D A V+   G +  
Sbjct: 10  LRFAQESSAHLSEQSR---VLSTFNIAFFGRTGAGKSTLLSAFGELDGAAVSPF-GESDW 65

Query: 257 VLTIDLDLEGYLVKISDTAGI-----RETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
             T++      + ++ DT GI     R++ D  E E   R  +E+  AD++LL  +  S+
Sbjct: 66  TTTVESIPWRGVCRLYDTPGINGWGGRKSRD--ELEATARRAVEI--ADVVLLCFDTQSQ 121

Query: 312 KEISFPKNIDFI 323
           +   F K  D++
Sbjct: 122 QASEFAKVADWV 133


>gi|332558240|ref|ZP_08412562.1| small GTP-binding protein [Rhodobacter sphaeroides WS8N]
 gi|332275952|gb|EGJ21267.1| small GTP-binding protein [Rhodobacter sphaeroides WS8N]
          Length = 447

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 29/165 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +   DV +  D+   T D     + L  G  V +SDT G    
Sbjct: 229 VALVGYTNAGKSTLFNRMTGADV-LAKDMLFATLDPTMRGVTLPSGRKVILSDTVGF--I 285

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEI----------------------NSKKEISF 316
            D+  +     + T  EV  ADLIL +++I                       +  ++  
Sbjct: 286 SDLPTQLVAAFRATLEEVLEADLILHVRDIAHPETAEQAADVAEILQSLGVKGATPQVEV 345

Query: 317 PKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIKS 360
              +D +       L +   + E    +S+ TGEGL +L+  + +
Sbjct: 346 WNKLDLVEGAAHEQLLAQAAKSETIFALSALTGEGLPDLLEAVSA 390


>gi|330469592|ref|YP_004407335.1| GTPase Era [Verrucosispora maris AB-18-032]
 gi|328812563|gb|AEB46735.1| GTPase Era [Verrucosispora maris AB-18-032]
          Length = 299

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   + G  NAGKS+L NA+  + +AI ++ P TTR ++   L      + + DT G
Sbjct: 11  RAGFACFV-GRPNAGKSTLTNAIVGQKIAITSNKPQTTRHIIRAVLHRPDSQLVLVDTPG 69

Query: 277 I 277
           +
Sbjct: 70  L 70


>gi|315930710|gb|EFV09724.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 305]
          Length = 288

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           G+ E+   + +  ++     + + D+IL +  +
Sbjct: 60  GLHESGATLNQLLVQSAIKSIGDCDVILFVASV 92


>gi|229019033|ref|ZP_04175874.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1273]
 gi|229025279|ref|ZP_04181699.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1272]
 gi|228736032|gb|EEL86607.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1272]
 gi|228742273|gb|EEL92432.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1273]
          Length = 296

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + +K      +++G     IR     +I+G  N GKS+L N LAKK++A   D PG T  
Sbjct: 102 ILVKEKFDKMVAKGIRPRAIRA----LIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTA 157

Query: 257 VLTIDLDLEGYLVKISDTAGI 277
              I +   G  +++ DT GI
Sbjct: 158 QQWIKV---GKEMELLDTPGI 175


>gi|170759247|ref|YP_001787754.1| ribosomal biogenesis GTPase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406236|gb|ACA54647.1| GTP-binding protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 292

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++++G  N GKSS  N +AK  +A V D PG T+    I   ++   +++ DT G+
Sbjct: 122 RVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQWIKTKID---IELMDTPGV 175


>gi|167626126|ref|YP_001676420.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella
           halifaxensis HAW-EB4]
 gi|189037189|sp|B0TNM9|ENGB_SHEHH RecName: Full=Probable GTP-binding protein EngB
 gi|167356148|gb|ABZ78761.1| GTP-binding protein HSR1-related [Shewanella halifaxensis HAW-EB4]
          Length = 226

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 10/70 (14%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTID- 261
           +H+++   G++   G +I   G SNAGKSS  N L ++ +A  +  PG T+  +V  +D 
Sbjct: 21  AHLNEYLPGDV---GVEIAFAGRSNAGKSSALNLLTEQKIARTSKTPGRTQLINVFKLDK 77

Query: 262 ----LDLEGY 267
               +DL GY
Sbjct: 78  HRRLVDLPGY 87


>gi|116491019|ref|YP_810563.1| GTPase [Oenococcus oeni PSU-1]
 gi|290890500|ref|ZP_06553575.1| hypothetical protein AWRIB429_0965 [Oenococcus oeni AWRIB429]
 gi|116091744|gb|ABJ56898.1| GTPase [Oenococcus oeni PSU-1]
 gi|290479896|gb|EFD88545.1| hypothetical protein AWRIB429_0965 [Oenococcus oeni AWRIB429]
          Length = 305

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 218 NGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           N YK   + I+G  N GKS+L N +  + VAI++    TTR+ +      E   V   DT
Sbjct: 3   NEYKSGFVAIIGRPNVGKSTLLNYIIGQKVAIISSKAQTTRNKIAGIYTTEEAQVVFLDT 62

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
            GI +  + +++   K +F  +  AD +  + +   K+
Sbjct: 63  PGIHKPYNSLDEYMEKASFGALNEADAVWFVVDATEKR 100


>gi|194337812|ref|YP_002019606.1| ferrous iron transport protein B [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194310289|gb|ACF44989.1| ferrous iron transport protein B [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 712

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G+ N GKSSLFNAL       V +  G T +     L+ +GY + + D  GI    
Sbjct: 9   VALAGNPNCGKSSLFNALTGSHQK-VGNFSGVTVEKYEGYLEYKGYHITVVDLPGIYSLT 67

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
               +E + R +L  E  D+++
Sbjct: 68  PYSPEEIVTREYLIKERPDVVV 89


>gi|327439579|dbj|BAK15944.1| predicted GTPase [Solibacillus silvestris StLB046]
          Length = 367

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 21/158 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           RNG  + ++G +N GKS+  N + K+     ++   +  PGTT D++ I LD    L   
Sbjct: 158 RNGKDVYVVGCTNVGKSTFINRIIKQATGEGEIITTSHFPGTTLDMIGIPLDDGSSLY-- 215

Query: 272 SDTAGI------------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            DT GI             E   I+ K+ IK    + +NA   L +  +     I   ++
Sbjct: 216 -DTPGIINHHQMAHHIDSSELKYIMPKKEIKPKVYQ-QNAGQTLFIGALARFDFIQGERS 273

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
              + +     ++ T  E  D L     GE L    +K
Sbjct: 274 AFTVHVANDLPIHRTKLERADQLYEEHKGELLAPPTSK 311


>gi|302191335|ref|ZP_07267589.1| hypothetical protein LineA_04927 [Lactobacillus iners AB-1]
 gi|309804171|ref|ZP_07698249.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           LactinV 11V1-d]
 gi|309809273|ref|ZP_07703142.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           SPIN 2503V10-D]
 gi|312871435|ref|ZP_07731530.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           LEAF 3008A-a]
 gi|312872375|ref|ZP_07732445.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           LEAF 2062A-h1]
 gi|325911972|ref|ZP_08174374.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           UPII 143-D]
 gi|329921303|ref|ZP_08277741.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           SPIN 1401G]
 gi|308163754|gb|EFO66023.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           LactinV 11V1-d]
 gi|308170386|gb|EFO72410.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           SPIN 2503V10-D]
 gi|311092198|gb|EFQ50572.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           LEAF 2062A-h1]
 gi|311093088|gb|EFQ51437.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           LEAF 3008A-a]
 gi|325476157|gb|EGC79321.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           UPII 143-D]
 gi|328934595|gb|EGG31099.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           SPIN 1401G]
          Length = 279

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 8/75 (10%)

Query: 208 SQGKLGEIIRNG-----YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           ++ K+ +II  G      K+ I G  N GKS++ N L  ++  IV D PG TR    +  
Sbjct: 105 TKDKVDKIIAKGAKEPVIKVAIAGIPNCGKSTIINRLVGRNATIVGDKPGVTRGQNWLKT 164

Query: 263 DLEGYLVKISDTAGI 277
           D     ++I DT GI
Sbjct: 165 DTN---IQILDTPGI 176


>gi|297742908|emb|CBI35744.3| unnamed protein product [Vitis vinifera]
          Length = 96

 Score = 38.5 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR 255
           +  ILG SN GKSSL NAL  KK+VA+ +  PG T+
Sbjct: 41  EFAILGRSNVGKSSLINALVRKKEVALTSKKPGKTQ 76


>gi|237708021|ref|ZP_04538502.1| GTP-binding protein Era [Bacteroides sp. 9_1_42FAA]
 gi|237725293|ref|ZP_04555774.1| GTP-binding protein Era [Bacteroides sp. D4]
 gi|265754192|ref|ZP_06089381.1| GTP-binding protein Era [Bacteroides sp. 3_1_33FAA]
 gi|229436559|gb|EEO46636.1| GTP-binding protein Era [Bacteroides dorei 5_1_36/D4]
 gi|229458007|gb|EEO63728.1| GTP-binding protein Era [Bacteroides sp. 9_1_42FAA]
 gi|263234901|gb|EEZ20456.1| GTP-binding protein Era [Bacteroides sp. 3_1_33FAA]
          Length = 293

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   L+ +   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNLLVGERISIATFKSQTTRHRIMGILNTDDMQIVFSDTPGVVKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  +  +   + +AD++L + ++  K +    KN DFI
Sbjct: 69  LQESMLNFSESALVDADILLYVTDVVEKTD----KNADFI 104


>gi|218281649|ref|ZP_03488050.1| hypothetical protein EUBIFOR_00617 [Eubacterium biforme DSM 3989]
 gi|218217256|gb|EEC90794.1| hypothetical protein EUBIFOR_00617 [Eubacterium biforme DSM 3989]
          Length = 359

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 15/120 (12%)

Query: 192 VLNDILFLKNDISSHISQGKLGEII--RNGYKIVILGHSNAGKSSLFNA-LAKKDVAIVT 248
           V+   L  +ND S   S   +  I+  R    ++ +G +NAGKS++ N  LA KD+    
Sbjct: 131 VICGYLLKENDKSREYSSRIVNAILKYRKNRNVIFMGVANAGKSTVLNHLLATKDLTTSQ 190

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           + PGTT D++ I    E Y   I DT GI  T  ++       T+L+ ++   ++  K I
Sbjct: 191 N-PGTTLDLVPI--PFEDY--TIYDTPGIENTHSLL-------TYLQSKDLKTVIPTKPI 238


>gi|170016751|ref|YP_001727670.1| GTPase [Leuconostoc citreum KM20]
 gi|169803608|gb|ACA82226.1| Predicted GTPase [Leuconostoc citreum KM20]
          Length = 381

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           + +R G  + ++G +N GKS+L N + K      D+   +  PGTT D + I L    +L
Sbjct: 173 DTLRQGRDVYVVGVTNVGKSTLINQIIKSRTGVTDLITTSRFPGTTLDRIEIPLADGQFL 232

Query: 269 VKISDTAGIRETDDI 283
           +   DT GI + D I
Sbjct: 233 I---DTPGIIKRDQI 244


>gi|168187762|ref|ZP_02622397.1| GTP-binding protein Era [Clostridium botulinum C str. Eklund]
 gi|169294368|gb|EDS76501.1| GTP-binding protein Era [Clostridium botulinum C str. Eklund]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ I I+G  N GKS+L N +  + ++IV+  P TTR+ +   L  + Y +   DT
Sbjct: 1   MFKSGF-ISIIGRPNVGKSTLTNDILGEKLSIVSCRPQTTRNNIRAVLTRDDYQLVFLDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +K      +  DLI+ +
Sbjct: 60  PGIHKPRHKLGEYMVKAAETSTDEVDLIVFI 90


>gi|154500768|ref|ZP_02038806.1| hypothetical protein BACCAP_04446 [Bacteroides capillosus ATCC
           29799]
 gi|150270657|gb|EDM97966.1| hypothetical protein BACCAP_04446 [Bacteroides capillosus ATCC
           29799]
          Length = 810

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GK++LFNAL   +   V + PG T +       ++G  V + D  GI   
Sbjct: 137 KLALVGNPNCGKTTLFNALTGSN-QYVGNWPGVTVEKKEGRAQVDGKDVTVVDLPGIYSL 195

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
                +E + R F+  E+ D I+
Sbjct: 196 SPYSMEEIVARDFIVGEHPDAII 218


>gi|134298516|ref|YP_001112012.1| small GTP-binding protein [Desulfotomaculum reducens MI-1]
 gi|134051216|gb|ABO49187.1| small GTP-binding protein [Desulfotomaculum reducens MI-1]
          Length = 650

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G  IV++G+ N GKS +FN L    V  V + PGTT +V+      +     ++DT GI
Sbjct: 12  TGKNIVLVGNPNVGKSVIFNYLTGSYVD-VANFPGTTNNVICGRFGQD----AVTDTPGI 66

Query: 278 RETDDIVEKEGIKR 291
                  E+E I R
Sbjct: 67  YGISSFNEEEKITR 80


>gi|52081076|ref|YP_079867.1| GTP-binding protein Era [Bacillus licheniformis ATCC 14580]
 gi|52786455|ref|YP_092284.1| GTP-binding protein Era [Bacillus licheniformis ATCC 14580]
 gi|319644966|ref|ZP_07999199.1| GTP-binding protein era [Bacillus sp. BT1B_CT2]
 gi|52004287|gb|AAU24229.1| GTP-binding protein [Bacillus licheniformis ATCC 14580]
 gi|52348957|gb|AAU41591.1| Era [Bacillus licheniformis ATCC 14580]
 gi|317392775|gb|EFV73569.1| GTP-binding protein era [Bacillus sp. BT1B_CT2]
          Length = 301

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLV 269
           E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+    VLT D     ++ 
Sbjct: 4   ESFKSGF-VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTDTSQTIFI- 61

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
              DT GI +    +    +K     ++  DLIL +
Sbjct: 62  ---DTPGIHKPKHKLGDFMMKVAHNTLKEVDLILFM 94


>gi|42782930|ref|NP_980177.1| ribosomal biogenesis GTPase [Bacillus cereus ATCC 10987]
 gi|42738857|gb|AAS42785.1| GTPase family protein [Bacillus cereus ATCC 10987]
          Length = 296

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|326430250|gb|EGD75820.1| hypothetical protein PTSG_07939 [Salpingoeca sp. ATCC 50818]
          Length = 226

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 224 ILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEG 266
           I G +N GKSS+ NA+ + K+ A V+  PGTT   +   LD++G
Sbjct: 21  IFGATNVGKSSVINAIVQPKEKATVSQRPGTTLGPICFSLDMQG 64


>gi|313893315|ref|ZP_07826890.1| ribosome biogenesis GTPase Era [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442211|gb|EFR60628.1| ribosome biogenesis GTPase Era [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 299

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + ++G  N GKS+L NAL    +AIV+D   TTR+ +      E   +   D
Sbjct: 5   EHFKSGF-VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDEAKQIVFMD 63

Query: 274 TAGI 277
           T G+
Sbjct: 64  TPGV 67


>gi|326779457|ref|ZP_08238722.1| GTP-binding protein Era [Streptomyces cf. griseus XylebKG-1]
 gi|326659790|gb|EGE44636.1| GTP-binding protein Era [Streptomyces cf. griseus XylebKG-1]
          Length = 321

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 10/139 (7%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           S  +Q +     R G+   + G  NAGKS+L NAL  + VAI ++ P TTR  +   +  
Sbjct: 9   SAAAQAETTSPHRAGFACFV-GRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHR 67

Query: 265 EGYLVKISDTAGIRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEIS 315
           +   + + DT G+ +   ++ +   + ++ T+ EV+       AD  L   +    KE++
Sbjct: 68  DDAQLILVDTPGLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKYIVKELA 127

Query: 316 FPKNIDFIFIGTKSDLYST 334
             +    I I TK+DL  +
Sbjct: 128 GIRKTPKIAIITKTDLVES 146


>gi|170683026|ref|YP_001745185.1| putative GTPase [Escherichia coli SMS-3-5]
 gi|170520744|gb|ACB18922.1| putative GTPase [Escherichia coli SMS-3-5]
 gi|323160912|gb|EFZ46836.1| putative GTPase [Escherichia coli E128010]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHGVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + G TR    + L L    + + D  GI ET
Sbjct: 68  PLNGCTRQAHRLTLQLGERRMTLVDMPGIGET 99


>gi|153940438|ref|YP_001391740.1| ribosomal biogenesis GTPase [Clostridium botulinum F str.
           Langeland]
 gi|152936334|gb|ABS41832.1| GTP-binding protein [Clostridium botulinum F str. Langeland]
 gi|295319765|gb|ADG00143.1| GTP-binding protein [Clostridium botulinum F str. 230613]
          Length = 292

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++++G  N GKSS  N +AK  +A V D PG T+    I   ++   +++ DT G+
Sbjct: 122 RVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQWIKTKID---IELMDTPGV 175


>gi|148380400|ref|YP_001254941.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|148289884|emb|CAL83992.1| putative GTPase [Clostridium botulinum A str. ATCC 3502]
          Length = 292

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++++G  N GKSS  N +AK  +A V D PG T+    I   ++   +++ DT G+
Sbjct: 122 RVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQWIKTKID---IELMDTPGV 175


>gi|83767467|dbj|BAE57606.1| unnamed protein product [Aspergillus oryzae]
          Length = 177

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           +  LG SN GKSSL NA+  K++   +  PG TR++
Sbjct: 98  VAFLGRSNVGKSSLLNAIMGKEICWTSSKPGRTREM 133


>gi|54293086|ref|YP_125501.1| GTPase EngB [Legionella pneumophila str. Lens]
 gi|54296120|ref|YP_122489.1| ribosome biogenesis GTP-binding protein YsxC [Legionella
           pneumophila str. Paris]
 gi|81601577|sp|Q5X097|ENGB_LEGPL RecName: Full=Probable GTP-binding protein EngB
 gi|81602058|sp|Q5X8V4|ENGB_LEGPA RecName: Full=Probable GTP-binding protein EngB
 gi|53749905|emb|CAH11287.1| hypothetical protein lpp0139 [Legionella pneumophila str. Paris]
 gi|53752918|emb|CAH14354.1| hypothetical protein lpl0124 [Legionella pneumophila str. Lens]
 gi|307608869|emb|CBW98267.1| hypothetical protein LPW_01251 [Legionella pneumophila 130b]
          Length = 200

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 42/174 (24%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +GY++   G SNAGKSS  N L   K++A  +  PG T+ +    LD +  LV +     
Sbjct: 25  SGYEVAFAGRSNAGKSSALNCLTNNKNLARTSKTPGRTQLINLFSLDEQRRLVDLPGYGY 84

Query: 277 IRETDDI-VEKEGIKRTFLEVENA--DLILLLKEINSKKEISFP-KNIDFIFIG------ 326
            +   ++ +E +     +LE       LILL+       ++  P K++D I +       
Sbjct: 85  AKVAMEVKLEWQKNLAHYLEARQCLRGLILLM-------DVRHPLKDLDQILVNWALHRE 137

Query: 327 -------TKSDLYS------------TYTEEYDHLI-----SSFTGEGLEELIN 356
                  TK+D  S             Y E  +HL+     SS   +G+EELI+
Sbjct: 138 LPVHILLTKADKLSRSEVKNAVLKVRQYYELAEHLVSVQAFSSVKKDGVEELIS 191


>gi|325926993|ref|ZP_08188268.1| GTP-binding protein Era [Xanthomonas perforans 91-118]
 gi|325542652|gb|EGD14119.1| GTP-binding protein Era [Xanthomonas perforans 91-118]
          Length = 285

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGI 277
           ++G  N GKS+L NAL    V+IV++ P TTR  +L I    EG LV + DT G+
Sbjct: 1   MIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLV-LVDTPGL 54


>gi|312877977|ref|ZP_07737918.1| ribosome biogenesis GTP-binding protein YsxC [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795251|gb|EFR11639.1| ribosome biogenesis GTP-binding protein YsxC [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 204

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV--LTID-----LDLEGY 267
           + I G SN GKSS  NA+ K  +A V   PG TR +    ID     +DL GY
Sbjct: 28  MCICGRSNVGKSSFINAVFKDKLAKVGSTPGKTRTINFFNIDNKFRVVDLPGY 80


>gi|309805733|ref|ZP_07699773.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           LactinV 09V1-c]
 gi|309806753|ref|ZP_07700747.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           LactinV 03V1-b]
 gi|309807512|ref|ZP_07701469.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           LactinV 01V1-a]
 gi|312873986|ref|ZP_07734022.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           LEAF 2052A-d]
 gi|312875498|ref|ZP_07735501.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           LEAF 2053A-b]
 gi|325912835|ref|ZP_08175213.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           UPII 60-B]
 gi|308164986|gb|EFO67229.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           LactinV 09V1-c]
 gi|308166868|gb|EFO69053.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           LactinV 03V1-b]
 gi|308169239|gb|EFO71300.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           LactinV 01V1-a]
 gi|311089009|gb|EFQ47450.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           LEAF 2053A-b]
 gi|311090535|gb|EFQ48943.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           LEAF 2052A-d]
 gi|325477828|gb|EGC80962.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
           UPII 60-B]
          Length = 279

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 8/75 (10%)

Query: 208 SQGKLGEIIRNG-----YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           ++ K+ +II  G      K+ I G  N GKS++ N L  ++  IV D PG TR    +  
Sbjct: 105 TKDKVDKIIAKGAKEPVIKVAIAGIPNCGKSTIINRLVGRNATIVGDKPGVTRGQNWLKT 164

Query: 263 DLEGYLVKISDTAGI 277
           D     ++I DT GI
Sbjct: 165 DTN---IQILDTPGI 176


>gi|270004156|gb|EFA00604.1| hypothetical protein TcasGA2_TC003476 [Tribolium castaneum]
          Length = 584

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 214 EIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           E  +NG   I  LG  N GKSSL NA+  K V  V+  PG T+   TI L      V++ 
Sbjct: 334 EKYKNGILTIGCLGQPNVGKSSLINAIMGKKVVSVSRTPGHTKHFQTIFLTPN---VRLC 390

Query: 273 DTAGI 277
           D  G+
Sbjct: 391 DCPGL 395


>gi|269215936|ref|ZP_06159790.1| GTP-binding protein Era [Slackia exigua ATCC 700122]
 gi|269130195|gb|EEZ61273.1| GTP-binding protein Era [Slackia exigua ATCC 700122]
          Length = 351

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 213 GEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           G  + N +K   + ++G  N GKSSL NA+    VAI +    TTR      L  +   V
Sbjct: 48  GTFMSNQFKSGFVTLVGRPNVGKSSLINAVVGHKVAITSSTAQTTRHRFRAILTTDDAQV 107

Query: 270 KISDTAGIRETDDIVEKE 287
            + DT G+ +  D + +E
Sbjct: 108 VMVDTPGLHKPHDALGEE 125


>gi|213692452|ref|YP_002323038.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523913|gb|ACJ52660.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320458597|dbj|BAJ69218.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 354

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L  K +AI +  P TTR  +   L  +   + + DT G
Sbjct: 45  RSGF-VAVVGRPNVGKSTLINTLIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTPG 103

Query: 277 I 277
           I
Sbjct: 104 I 104


>gi|17229610|ref|NP_486158.1| iron(II) transporter [Nostoc sp. PCC 7120]
 gi|17131209|dbj|BAB73817.1| iron(II) transporter [Nostoc sp. PCC 7120]
          Length = 206

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +Q    + + +  +I ++G  N GKS LFN L    V  V++ PGTT +V      +   
Sbjct: 26  NQQPFTQDVSHNPQIALVGMPNVGKSVLFNTLTGIYVT-VSNYPGTTVEVSRGLAQIGEQ 84

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            + + DT G+     I E+E + R  L +E
Sbjct: 85  SITVIDTPGMYSLLPISEEEKVARDLLLLE 114


>gi|15669655|ref|NP_248468.1| GTP-binding protein [Methanocaldococcus jannaschii DSM 2661]
 gi|38258706|sp|Q58859|Y1464_METJA RecName: Full=Uncharacterized GTP-binding protein MJ1464
 gi|1592105|gb|AAB99472.1| hypothetical GTP-binding protein (SP:P40010) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 373

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L E+ +   K+ I+G+ N GKSS+ NAL  K  A+   + G T+    + L      +K+
Sbjct: 103 LKEMGKKEGKVGIVGYPNVGKSSIINALTGKRKALTGSVAGLTKGEQWVRLTKN---IKL 159

Query: 272 SDTAGI---RETDDIV 284
            DT G+   R+ DD+V
Sbjct: 160 MDTPGVLEMRDEDDLV 175


>gi|301788600|ref|XP_002929716.1| PREDICTED: guanine nucleotide-binding protein-like 3-like
           protein-like isoform 1 [Ailuropoda melanoleuca]
          Length = 574

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 238 RLGEV-RTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGITKFMQEVYLD---KFIR 293

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 294 LLDAPGI 300


>gi|261334178|emb|CBH17172.1| GTP-binding protein, putative [Trypanosoma brucei gambiense DAL972]
          Length = 489

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GKSS+ NAL +K V  V ++PG T     ++L  +   +++ D  G
Sbjct: 256 RKAIVVGVIGYPNVGKSSVINALKRKHVVGVGNMPGFTTGNTEVELRSD---IRVMDCPG 312

Query: 277 I----RETDDIVEKEGIK 290
           +     +  D+V +  +K
Sbjct: 313 VVAPGEDCGDVVLRNAVK 330


>gi|257055404|ref|YP_003133236.1| GTP-binding protein Era [Saccharomonospora viridis DSM 43017]
 gi|256585276|gb|ACU96409.1| GTP-binding protein Era [Saccharomonospora viridis DSM 43017]
          Length = 300

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   + G  NAGKS+L NAL    VAI +  P TTR  +   +  E   + I DT G
Sbjct: 7   RSGFACFV-GRPNAGKSTLTNALVGSKVAITSSKPQTTRHAIRGIVHREDAQLIIVDTPG 65

Query: 277 I 277
           +
Sbjct: 66  L 66


>gi|229593175|ref|YP_002875294.1| hypothetical protein PFLU5805 [Pseudomonas fluorescens SBW25]
 gi|229365041|emb|CAY53215.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 452

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGI 277
           K+ ++GH+N GK+SL   L  +DV    V+  P TTR V    L ++G  L+++ DT G+
Sbjct: 6   KLAVVGHTNVGKTSLLRTLT-RDVGFGEVSHRPSTTRHVEGARLSVDGEALLELYDTPGL 64

Query: 278 RET 280
            + 
Sbjct: 65  EDA 67


>gi|193215228|ref|YP_001996427.1| ribosome biogenesis GTP-binding protein YsxC [Chloroherpeton
           thalassium ATCC 35110]
 gi|238692681|sp|B3QS35|ENGB_CHLT3 RecName: Full=Probable GTP-binding protein EngB
 gi|193088705|gb|ACF13980.1| GTP-binding protein HSR1-related [Chloroherpeton thalassium ATCC
           35110]
          Length = 193

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 206 HISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDV 257
           + S  +L ++ ++G  +I   G SN GKSSL N L  KKD+A  +  PG TR++
Sbjct: 9   YKSVTRLEDLPKDGLPEIAFAGRSNVGKSSLMNTLMGKKDLARASATPGKTREI 62


>gi|160893993|ref|ZP_02074772.1| hypothetical protein CLOL250_01548 [Clostridium sp. L2-50]
 gi|156864371|gb|EDO57802.1| hypothetical protein CLOL250_01548 [Clostridium sp. L2-50]
          Length = 111

 Score = 38.5 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           N   I + G +N+GKSS  N  + ++++IV D+ GTT D
Sbjct: 11  NRLHIGVFGKTNSGKSSFINRFSGQNISIVADVAGTTTD 49


>gi|15613930|ref|NP_242233.1| Era/ThdF family GTP-binding protein [Bacillus halodurans C-125]
 gi|13959358|sp|Q9KD52|ERA_BACHD RecName: Full=GTPase Era
 gi|10173983|dbj|BAB05086.1| GTP-binding protein (Era/ThdF family) [Bacillus halodurans C-125]
          Length = 304

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           + G+K   + I+G  N GKS+L N +  + +AI++D P TTR+ +      E   +   D
Sbjct: 5   KEGFKSGFVSIIGRPNVGKSTLLNHVIGQKIAIMSDKPQTTRNKIQGVYTSEDSQIVFID 64

Query: 274 TAGIRE 279
           T GI +
Sbjct: 65  TPGIHK 70


>gi|71754865|ref|XP_828347.1| GTP-binding protein [Trypanosoma brucei TREU927]
 gi|70833733|gb|EAN79235.1| GTP-binding protein, putative [Trypanosoma brucei]
          Length = 486

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GKSS+ NAL +K V  V ++PG T     ++L  +   +++ D  G
Sbjct: 253 RKAIVVGVIGYPNVGKSSVINALKRKHVVGVGNMPGFTTGNTEVELRSD---IRVMDCPG 309

Query: 277 I----RETDDIVEKEGIK 290
           +     +  D+V +  +K
Sbjct: 310 VVAPGEDCGDVVLRNAVK 327


>gi|329961837|ref|ZP_08299851.1| GTP-binding protein HflX [Bacteroides fluxus YIT 12057]
 gi|328531277|gb|EGF58121.1| GTP-binding protein HflX [Bacteroides fluxus YIT 12057]
          Length = 420

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 22/129 (17%)

Query: 192 VLNDILFLKN-----DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-- 244
           +LN +  LK      D      +   G +IR    + ++G++N GKS+L N LAK +V  
Sbjct: 189 ILNRMSLLKERLAEIDKQKSTQRKNRGRMIR----VALVGYTNVGKSTLMNLLAKSEVFA 244

Query: 245 --AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300
              +   +  T R V+     +E     +SDT G IR+   D+V  +  K T  EV  AD
Sbjct: 245 ENKLFATLDTTVRKVI-----IENLPFLLSDTVGFIRKLPTDLV--DSFKSTLDEVREAD 297

Query: 301 LILLLKEIN 309
           L+L + +I+
Sbjct: 298 LLLHIVDIS 306


>gi|307297311|ref|ZP_07577117.1| ribosome biogenesis GTP-binding protein YsxC [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916571|gb|EFN46953.1| ribosome biogenesis GTP-binding protein YsxC [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 190

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 18/141 (12%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + +  S+G+    +R   +I   G SN GKSSL N+L  + +A  +  PG TR +    +
Sbjct: 9   VRTVFSKGEYPPPLRR--EIAFAGRSNVGKSSLLNSLFGRKLAKTSSTPGKTRSINFYGV 66

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----ENADLILLLKEINSKKE----- 313
           + E Y V +      + +  + E+E  K+  ++     E   L+++L +I    +     
Sbjct: 67  NREIYFVDLPGYGYAKAS--MSEREKWKKLIIDYFESREELSLVVVLVDIRHPLQPADIQ 124

Query: 314 ----ISFPKNIDFIFIGTKSD 330
               +++   I FI + TK+D
Sbjct: 125 MLEWVTY-YTIPFILVLTKAD 144


>gi|312114083|ref|YP_004011679.1| GTP-binding proten HflX [Rhodomicrobium vannielii ATCC 17100]
 gi|311219212|gb|ADP70580.1| GTP-binding proten HflX [Rhodomicrobium vannielii ATCC 17100]
          Length = 462

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 77/173 (44%), Gaps = 43/173 (24%)

Query: 222 IVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G++NAGKS+LFNAL+      KD+   T  P T R V   D    G    +SDT G
Sbjct: 233 VSLVGYTNAGKSTLFNALSGAGVLAKDMLFATLDP-TLRRVEFAD----GGAFILSDTVG 287

Query: 277 I---RETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISFPK-----NID--- 321
                 T  IV       T  E+  ADLIL +++I S     ++I   +      ID   
Sbjct: 288 FISDLPTQLIV---AFHATLEEILEADLILHVRDIASASSEAQKIEVERVLAEIGIDAAA 344

Query: 322 ----FIFIGTKSDLYS--------TYTEEYDH---LISSFTGEGLEELINKIK 359
                I +  KSDL S           E   H   L+S+ TGEG+ EL   I+
Sbjct: 345 QASRVIEVWNKSDLLSEDERSAVGKRAENAAHPAGLVSAQTGEGVPELAAAIR 397


>gi|253682206|ref|ZP_04863003.1| GTP-binding protein [Clostridium botulinum D str. 1873]
 gi|253561918|gb|EES91370.1| GTP-binding protein [Clostridium botulinum D str. 1873]
          Length = 597

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 35/187 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAK----KDV-----AIVTDIPGTTRDVLTIDLDL-EGYLVK 270
           K+ ++G++NAGKS+L N L +    KDV         D+   T DV T  L L +  L+ 
Sbjct: 365 KVSLVGYTNAGKSTLRNKLCEIASPKDVYQKEEVFEADMLFATLDVTTRALILPDNRLIT 424

Query: 271 ISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID------- 321
           ++DT G IR+   D+V  E  K T  EV N++L+L + + +S+      + ++       
Sbjct: 425 LTDTVGFIRKLPHDLV--EAFKSTLEEVINSELLLHVVDASSESAYKQIEAVNVVLEELG 482

Query: 322 -----FIFIGTKSDLYSTYT-----EEYDHL----ISSFTGEGLEELINKIKSILSNKFK 367
                 I +  K D  S  +     EEY +L    IS      L+ L+ ++   L N  +
Sbjct: 483 AADKPMILLLNKVDTASNESITKLKEEYSNLNILEISGKNNINLDLLLEEVCKALPNPLR 542

Query: 368 KLPFSIP 374
           K+ + IP
Sbjct: 543 KIEYLIP 549


>gi|308189704|ref|YP_003922635.1| GTP-binding protein [Mycoplasma fermentans JER]
 gi|319776888|ref|YP_004136539.1| gtp-binding protein [Mycoplasma fermentans M64]
 gi|238809675|dbj|BAH69465.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624446|gb|ADN68751.1| predicted GTP-binding protein [Mycoplasma fermentans JER]
 gi|318037963|gb|ADV34162.1| GTP-binding protein [Mycoplasma fermentans M64]
          Length = 284

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           S  ++LN +  L     S I + K    + +  K+ +LG  NAGKS+L N ++++    V
Sbjct: 96  SRNQILNQLKVLS---QSKIKKDKEKGFLTSNIKVFVLGVPNAGKSTLINLMSQRKSLKV 152

Query: 248 TDIPGTTR 255
            + PG TR
Sbjct: 153 ANYPGVTR 160


>gi|228992566|ref|ZP_04152493.1| Ras superfamily GTP-binding protein YlqF [Bacillus pseudomycoides
           DSM 12442]
 gi|228998614|ref|ZP_04158201.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides
           Rock3-17]
 gi|229006114|ref|ZP_04163802.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides
           Rock1-4]
 gi|228755190|gb|EEM04547.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides
           Rock1-4]
 gi|228761082|gb|EEM10041.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides
           Rock3-17]
 gi|228767200|gb|EEM15836.1| Ras superfamily GTP-binding protein YlqF [Bacillus pseudomycoides
           DSM 12442]
          Length = 290

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|150003044|ref|YP_001297788.1| GTP-binding protein Era [Bacteroides vulgatus ATCC 8482]
 gi|254883682|ref|ZP_05256392.1| GTP-binding protein Era [Bacteroides sp. 4_3_47FAA]
 gi|294775668|ref|ZP_06741176.1| GTP-binding protein Era [Bacteroides vulgatus PC510]
 gi|319642180|ref|ZP_07996840.1| GTP-binding protein [Bacteroides sp. 3_1_40A]
 gi|149931468|gb|ABR38166.1| putative GTP-binding protein [Bacteroides vulgatus ATCC 8482]
 gi|254836475|gb|EET16784.1| GTP-binding protein Era [Bacteroides sp. 4_3_47FAA]
 gi|294450512|gb|EFG19004.1| GTP-binding protein Era [Bacteroides vulgatus PC510]
 gi|317386166|gb|EFV67085.1| GTP-binding protein [Bacteroides sp. 3_1_40A]
          Length = 293

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   L+ +   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNLLVGERISIATFKSQTTRHRIMGILNTDDMQIVFSDTPGVVKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  +  +   + +AD++L + ++  K +    KN DFI
Sbjct: 69  LQESMLNFSESALVDADILLYVTDVVEKTD----KNADFI 104


>gi|33338590|gb|AAQ13917.1| HflX [Pasteurella multocida]
          Length = 448

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 52/210 (24%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           I ++G++NAGKS+LFN + + +V     +  T    L  + +   G  + ++DT G IR 
Sbjct: 222 ISLVGYTNAGKSTLFNLITQANVYAADQLFATLDPTLRRLQIQDVGTTI-LADTVGFIRH 280

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKN 319
              D+V     K T  E   A L+L                   +LKEIN+        +
Sbjct: 281 LPHDLV--SAFKSTLQETTEAALLLHVIDCADPRKLENIHAVEAVLKEINA-------GD 331

Query: 320 IDFIFIGTKSDLYSTYTE--EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLP 370
           I  + +  K D  +      EYD         +S+ TG GL  L++ I   L N+   L 
Sbjct: 332 IPTLLVYNKIDQVAHIEPHIEYDQEQRPIAVYMSAQTGIGLPLLLDAISLCLKNEILDLA 391

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
            ++P H   + H           +L ++DC
Sbjct: 392 LTLPVHTGKIRH-----------ALYQQDC 410


>gi|330954968|gb|EGH55228.1| GTP-binding protein, HSR1-related protein [Pseudomonas syringae Cit
           7]
          Length = 462

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGI 277
           K+ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  LV++ DT G+
Sbjct: 11  KLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVDGEALVELYDTPGL 69


>gi|301788602|ref|XP_002929717.1| PREDICTED: guanine nucleotide-binding protein-like 3-like
           protein-like isoform 2 [Ailuropoda melanoleuca]
          Length = 581

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 245 RLGEV-RTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGITKFMQEVYLD---KFIR 300

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 301 LLDAPGI 307


>gi|221640559|ref|YP_002526821.1| ribosome biogenesis GTP-binding protein YsxC [Rhodobacter
           sphaeroides KD131]
 gi|221161340|gb|ACM02320.1| GTP-binding protein engB [Rhodobacter sphaeroides KD131]
          Length = 217

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++   G SN GKSSL NAL  +K +A  ++ PG T+++    L    YLV +        
Sbjct: 47  EVCFAGRSNVGKSSLINALTGRKALARASNTPGRTQEINYFALGPSRYLVDLPGYGYAEA 106

Query: 280 TDDIVEK 286
              IVE+
Sbjct: 107 PKPIVER 113


>gi|186703657|emb|CAQ43267.1| Nucleolar GTP-binding protein 2 [Zygosaccharomyces rouxii]
 gi|186703836|emb|CAQ43524.1| Nucleolar GTP-binding protein 2 [Zygosaccharomyces rouxii]
          Length = 503

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    +L+       
Sbjct: 313 RKQISVGFIGYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLMKRIFLIDCPGIVP 372

Query: 277 IRETDDIVEKEGIKRTFLEVEN 298
              TD+  E++ + R  + VEN
Sbjct: 373 PSSTDN--EQDILLRGVVRVEN 392


>gi|153930882|ref|YP_001384617.1| ribosomal biogenesis GTPase [Clostridium botulinum A str. ATCC
           19397]
 gi|153936572|ref|YP_001388134.1| ribosomal biogenesis GTPase [Clostridium botulinum A str. Hall]
 gi|168180677|ref|ZP_02615341.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
 gi|152926926|gb|ABS32426.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932486|gb|ABS37985.1| GTP-binding protein [Clostridium botulinum A str. Hall]
 gi|182668420|gb|EDT80399.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
 gi|322806707|emb|CBZ04276.1| 50s ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
           [Clostridium botulinum H04402 065]
          Length = 292

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++++G  N GKSS  N +AK  +A V D PG T+    I   ++   +++ DT G+
Sbjct: 122 RVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQWIKTKID---IELMDTPGV 175


>gi|71653907|ref|XP_815583.1| GTP-binding protein [Trypanosoma cruzi strain CL Brener]
 gi|70880648|gb|EAN93732.1| GTP-binding protein, putative [Trypanosoma cruzi]
          Length = 636

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I ++GH N GKSSL N +    V  V+  PG T+ + TI +  E   V + D+ G+
Sbjct: 446 RIGVVGHPNVGKSSLLNCIRGTKVVSVSATPGHTKHLQTIPIPSEH--VVLIDSPGL 500


>gi|326435855|gb|EGD81425.1| hypothetical protein PTSG_02146 [Salpingoeca sp. ATCC 50818]
          Length = 528

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 13/86 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL--------DLEGYLVKISD 273
           +  +G SN GKSS+ NAL + + A   D PG T+ V    L        DL GY    + 
Sbjct: 248 VCFIGRSNVGKSSVINALGRSNPARTEDKPGVTKTVNFYALEKSSVNVVDLPGYGFAFAK 307

Query: 274 TAGIRETDDIVE-----KEGIKRTFL 294
           T    E    VE     +  ++R F+
Sbjct: 308 TDNQNEWQQTVEDYLSQRANLRRIFV 333


>gi|324327599|gb|ADY22859.1| GTP-binding protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 424

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADIIL 280


>gi|307706254|ref|ZP_07643068.1| GTP-binding proten HflX [Streptococcus mitis SK321]
 gi|307618345|gb|EFN97498.1| GTP-binding proten HflX [Streptococcus mitis SK321]
          Length = 412

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNTLTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPRLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E L    + KIK I  +   ++PFS  S+K H
Sbjct: 318 NKADLVEDFTPTQTPYALISAKSEDSRENLQALFLEKIKDIFESFTLRVPFS-KSYKIH 375


>gi|298529510|ref|ZP_07016913.1| ribosome biogenesis GTP-binding protein YsxC [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510946|gb|EFI34849.1| ribosome biogenesis GTP-binding protein YsxC [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 206

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDV 257
           +I + G SN GKSSL N+LA +K +A ++  PG TR +
Sbjct: 24  QIALAGRSNVGKSSLINSLAGQKKLARISSTPGKTRSI 61


>gi|146278899|ref|YP_001169058.1| ribosome biogenesis GTP-binding protein YsxC [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145557140|gb|ABP71753.1| GTP-binding protein, HSR1-related [Rhodobacter sphaeroides ATCC
           17025]
          Length = 217

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++   G SN GKSSL NAL  +K +A  ++ PG T+++    L    YLV +        
Sbjct: 47  EVCFAGRSNVGKSSLINALTGRKALARASNTPGRTQEINYFALGPSRYLVDLPGYGYAEA 106

Query: 280 TDDIVEK 286
              IVE+
Sbjct: 107 PKPIVER 113


>gi|9506611|ref|NP_061940.1| guanine nucleotide-binding protein-like 3-like protein [Homo
           sapiens]
 gi|296317324|ref|NP_001171748.1| guanine nucleotide-binding protein-like 3-like protein [Homo
           sapiens]
 gi|74752999|sp|Q9NVN8|GNL3L_HUMAN RecName: Full=Guanine nucleotide-binding protein-like 3-like
           protein
 gi|7022755|dbj|BAA91712.1| unnamed protein product [Homo sapiens]
 gi|15079836|gb|AAH11720.1| GNL3L protein [Homo sapiens]
 gi|57162510|emb|CAI40396.1| guanine nucleotide binding protein-like 3 (nucleolar)-like [Homo
           sapiens]
 gi|119613588|gb|EAW93182.1| guanine nucleotide binding protein-like 3 (nucleolar)-like, isoform
           CRA_a [Homo sapiens]
 gi|119613589|gb|EAW93183.1| guanine nucleotide binding protein-like 3 (nucleolar)-like, isoform
           CRA_a [Homo sapiens]
 gi|119613591|gb|EAW93185.1| guanine nucleotide binding protein-like 3 (nucleolar)-like, isoform
           CRA_a [Homo sapiens]
          Length = 582

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 245 RLGEV-RTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGITKFMQEVYLD---KFIR 300

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 301 LLDAPGI 307


>gi|328676015|gb|AEB28690.1| GTP-binding protein EngB [Francisella cf. novicida 3523]
          Length = 197

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 9/65 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL-------DLEGY-LV 269
           G ++   G SNAGKSS  N L  +K +A V+  PG T+ +   DL       DL GY   
Sbjct: 23  GVEVAFAGRSNAGKSSALNTLTDQKGLARVSKTPGRTQLINLFDLGDNKRLVDLPGYGYA 82

Query: 270 KISDT 274
           K+S+T
Sbjct: 83  KVSET 87


>gi|253733519|ref|ZP_04867684.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728573|gb|EES97302.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAK+ +A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKV---GNALQLLDTPGI 175


>gi|227504556|ref|ZP_03934605.1| GTP-binding protein Era [Corynebacterium striatum ATCC 6940]
 gi|227198876|gb|EEI78924.1| GTP-binding protein Era [Corynebacterium striatum ATCC 6940]
          Length = 329

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  + P TTR  +   +  E   V + D
Sbjct: 29  EGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITANQPETTRHPIRGLVHREDAQVIVVD 87

Query: 274 TAGIRETDDIVEK---EGIKRTFLEVE 297
           T G+     ++ +   E +K T+ +V+
Sbjct: 88  TPGLHRPRTLLGERLNEMVKDTYADVD 114


>gi|225467670|ref|XP_002269560.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 193

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +  ILG SN GKSSL NAL  KK+VA+ +  PG T+ +    ++   Y+V +
Sbjct: 138 EFAILGRSNVGKSSLINALVRKKEVALTSKKPGKTQLINHFLVNKSWYIVDL 189


>gi|254490819|ref|ZP_05104002.1| GTP-binding protein Era [Methylophaga thiooxidans DMS010]
 gi|224463991|gb|EEF80257.1| GTP-binding protein Era [Methylophaga thiooxydans DMS010]
          Length = 301

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R+GY + I+G  N GKS+L N +  + + I +  P TTR  +L I  +  G  + + DT 
Sbjct: 7   RSGY-VAIIGRPNVGKSTLINRILGQKLCITSRRPQTTRHRILGIKTNDSGQFIYV-DTP 64

Query: 276 GIRETDDIVEKEGIKRTFL-EVENADLILLLKE 307
           G+   +       + R     +E+ D+IL + E
Sbjct: 65  GMHSDNKKAMNRYMNRAAASSIEDVDVILFVVE 97


>gi|221502798|gb|EEE28512.1| GTP-binding protein-animal, putative [Toxoplasma gondii VEG]
          Length = 641

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ NAL  K V     IPG TR    + L    YL+   D  G
Sbjct: 340 RKHVSVGFIGYPNVGKSSIINALRSKQVCRAAPIPGETRVWQYVALTKRLYLI---DCPG 396

Query: 277 I 277
           I
Sbjct: 397 I 397


>gi|47459175|ref|YP_016037.1| GTPase EngB [Mycoplasma mobile 163K]
 gi|81614262|sp|Q6KHV1|ENGB_MYCMO RecName: Full=Probable GTP-binding protein EngB
 gi|47458504|gb|AAT27826.1| GTP-binding protein [Mycoplasma mobile 163K]
          Length = 181

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 13/104 (12%)

Query: 208 SQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID----- 261
           S  K  E ++N   +I  +G SN GKSSL NAL K  V  V   PG T+ +   +     
Sbjct: 7   SSTKESEWLKNPKNEICFVGRSNVGKSSLINALFKTRVVKVGKTPGKTKLINFFEDERGN 66

Query: 262 --LDLEGY-LVKISDTAGIRETDDIVE----KEGIKRTFLEVEN 298
             +DL GY   K+S  A    +D I E    +  IK+ FL +++
Sbjct: 67  SVVDLPGYGYAKLSKEAQSEISDMIFEFLTKRVEIKKLFLLIDS 110


>gi|332254490|ref|XP_003276362.1| PREDICTED: guanine nucleotide-binding protein-like 3-like protein
           [Nomascus leucogenys]
          Length = 581

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 244 RLGEV-RTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGITKFMQEVYLD---KFIR 299

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 300 LLDAPGI 306


>gi|319651635|ref|ZP_08005762.1| GTP-binding protein [Bacillus sp. 2_A_57_CT2]
 gi|317396702|gb|EFV77413.1| GTP-binding protein [Bacillus sp. 2_A_57_CT2]
          Length = 368

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 29/173 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+  N + K+     DV   +  PGTT D++ I L     LV  
Sbjct: 159 REGKDVYVVGCTNVGKSTFINRILKEVTGEGDVITTSHFPGTTLDIIEIPLSDGKALV-- 216

Query: 272 SDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFIFIG 326
            DT GI    +    V+K  +K   +     ++   + ++N  + + F      D+I  G
Sbjct: 217 -DTPGIINHHQMAHYVDKRDLK---VITPKKEIKPKVYQLNEAQTLFFGGLARFDYIAGG 272

Query: 327 TKS---------DLYSTYTEEYDHLISSFTGEGL----EELINKIKSILSNKF 366
            +S          ++ T TE+ D L  +  GE L    EE +     ++ ++F
Sbjct: 273 RRSFVCHFSNELTIHRTKTEKADELYRNHAGEMLTPPREEQMETFPELVKHEF 325


>gi|284929253|ref|YP_003421775.1| small GTP-binding protein domain protein [cyanobacterium UCYN-A]
 gi|284809697|gb|ADB95394.1| small GTP-binding protein domain protein [cyanobacterium UCYN-A]
          Length = 517

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK--ISDT 274
           R  +K+++ G  + GK+SL N+L  + +  V    GTT+  ++  + L+G   K  I+DT
Sbjct: 127 RQEFKVILFGKGSVGKTSLINSLVGEVIGQVNSSMGTTKIGVSYRIKLKGLSSKVLITDT 186

Query: 275 AGIRETDDIVEKEG 288
            GI E     EK G
Sbjct: 187 PGILEMGLKGEKRG 200


>gi|269794275|ref|YP_003313730.1| GTPase [Sanguibacter keddieii DSM 10542]
 gi|269096460|gb|ACZ20896.1| predicted GTPase [Sanguibacter keddieii DSM 10542]
          Length = 344

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 16/87 (18%)

Query: 208 SQGKLGEI-----IRN---GYKIVILGHSNAGKSSLFNAL---AKKDVAIVTDIPGTTRD 256
           S+G  GEI     +R+   G   V +GHS  GKS+L NAL   A++   +V D+ G  R 
Sbjct: 186 SRGDEGEITPLEAVRDSLSGRTSVFVGHSGVGKSTLVNALVPGARRTTGVVNDVTGRGRQ 245

Query: 257 VLTIDLDL-----EGYLVKISDTAGIR 278
             T  + L     +G    + DT G+R
Sbjct: 246 TSTSAVALRLPEHDGARGWVIDTPGVR 272


>gi|223975805|gb|ACN32090.1| unknown [Zea mays]
          Length = 594

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G  N GKSSL N+L +  V  V   PG TR +  + LD +   VK+ D  G+
Sbjct: 268 VGIVGLPNVGKSSLINSLKRSRVVNVGSTPGITRSMQEVQLDKK---VKLLDCPGV 320


>gi|225438255|ref|XP_002264972.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|225469400|ref|XP_002263516.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 316

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +  ILG SN GKSSL NAL  KK+VA+ +  PG T+ +    ++   Y+V +
Sbjct: 138 EFAILGRSNVGKSSLINALVRKKEVALTSKKPGKTQLINHFLVNKSWYIVDL 189


>gi|323960159|gb|EGB55802.1| hypothetical protein ERGG_03290 [Escherichia coli H489]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHCVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            + G TR    + L L    + + D  GI ET  
Sbjct: 68  PLNGCTRQAHRLTLQLGERRMTLVDLPGIGETPQ 101


>gi|331681079|ref|ZP_08381716.1| conserved hypothetical protein [Escherichia coli H299]
 gi|331081300|gb|EGI52461.1| conserved hypothetical protein [Escherichia coli H299]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHGVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            + G TR    + L L    + + D  GI ET  
Sbjct: 68  PLNGCTRQAHRLTLQLGERRMTLVDLPGIGETPQ 101


>gi|288574914|ref|ZP_06393271.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570655|gb|EFC92212.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 203

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           +I + G SN GKSSL NAL  + +A ++  PG TR +
Sbjct: 25  EIALAGRSNVGKSSLLNALIDQKIAHISSKPGKTRSI 61


>gi|226949795|ref|YP_002804886.1| GTP-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|226844044|gb|ACO86710.1| GTP-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 292

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++++G  N GKSS  N +AK  +A V D PG T+    I   ++   +++ DT G+
Sbjct: 122 RVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQWIKTKID---IELMDTPGV 175


>gi|159042882|ref|YP_001531676.1| ribosome biogenesis GTP-binding protein YsxC [Dinoroseobacter
           shibae DFL 12]
 gi|157910642|gb|ABV92075.1| GTP-binding protein [Dinoroseobacter shibae DFL 12]
          Length = 217

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 178 FSEEEDVQNFSSKEVL--NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
            S E D Q+  +   L   ++ FLK  ++        G    +  ++   G SN GKSSL
Sbjct: 8   LSPEPDAQSLEAGRKLFAGEVTFLKGVVAMS------GLPPADRLEVCFAGRSNVGKSSL 61

Query: 236 FNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            NAL  +K +A  ++ PG T+++    L  + YLV +
Sbjct: 62  INALTGRKALARTSNTPGRTQEINYFCLGEDRYLVDV 98


>gi|56566233|gb|AAN75146.2| NOG2 [Cryptococcus neoformans var. grubii]
          Length = 693

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  GI
Sbjct: 304 VGFIGYPNTGKSSIINTLKKKKVCTVAPIPGETKVWQYITLMRRIYLI---DCPGI 356


>gi|18976769|ref|NP_578126.1| GTP-binding protein [Pyrococcus furiosus DSM 3638]
 gi|18892360|gb|AAL80521.1| GTP-binding protein homologue [Pyrococcus furiosus DSM 3638]
          Length = 186

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           K+ I+G  N GKS+L NAL    ++ V+++PGTT+  +
Sbjct: 3   KVAIIGAENVGKSTLMNALLGGKISEVSEVPGTTKGTI 40


>gi|62391126|ref|YP_226528.1| GTP-binding protein Era [Corynebacterium glutamicum ATCC 13032]
 gi|41326465|emb|CAF20627.1| BEX PROTEIN (GTP-BINDING PROTEIN ERA HOMOLOG) [Corynebacterium
           glutamicum ATCC 13032]
          Length = 332

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI  + P TTR  +   +  +   + + DT G
Sbjct: 38  RSGF-VSFVGRPNTGKSTLTNALVGEKIAITANQPETTRHPIRGLVHRDNAQIIVVDTPG 96

Query: 277 IRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK 311
           +     ++ +   E +K T+ +V   DLI      N K
Sbjct: 97  LHRPRTLLGERLNEAVKDTYADV---DLIGFTVPANEK 131


>gi|38234020|ref|NP_939787.1| putative GTP-binding protein [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200282|emb|CAE49967.1| Putative GTP-binding protein [Corynebacterium diphtheriae]
          Length = 536

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           +I I G++NAGKSSL NA+    V +V D    T D  T   +L +G  V  +DT G   
Sbjct: 314 QIAIAGYTNAGKSSLINAMTGAGV-LVEDALFATLDPTTRRAELADGRAVVFTDTVGFVR 372

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E  + T  EV +ADL+L
Sbjct: 373 HLPTQLVESFRSTLEEVVDADLVL 396


>gi|329297706|ref|ZP_08255042.1| GTPase Era [Plautia stali symbiont]
          Length = 300

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 37/193 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  + + +  EG Y     DT G+R  
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRI-MGIHTEGAYQAIYVDTPGLR-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             + EK  I R             L    +   I   + + F+  GT+      +T + +
Sbjct: 68  --MEEKRAINR-------------LMNRAASSSIGDVELVIFVVEGTR------WTPDDE 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++      +  +  +NK+ +I  +K   LP        HL  LSQ + +LE+  ++ E
Sbjct: 107 MVLNKLRDGKVPVVLAVNKVDNI-QDKSILLP--------HLQFLSQQMNFLEIVPISAE 157

Query: 398 KDCGLDIIAENLR 410
               +D IAE  R
Sbjct: 158 TGKNMDAIAEITR 170


>gi|315639031|ref|ZP_07894201.1| GTP-binding protein Era [Campylobacter upsaliensis JV21]
 gi|315480943|gb|EFU71577.1| GTP-binding protein Era [Campylobacter upsaliensis JV21]
          Length = 291

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 8/122 (6%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGYLVKISDT 274
           +++G+ I ++G +NAGKS+L N+L ++ +A+V+     T R +  I +  +  L+ I DT
Sbjct: 1   MKSGF-ISLIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMQDDNQLIFI-DT 58

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNIDFIFIGTKS 329
            G+ E+   + +  ++     +++ D+I+ +  +     + +K ++    I  + +  K 
Sbjct: 59  PGLHESKATLNQLLVQSAMKAMKDCDVIVFVASVFDEISDYEKFLALKPQIPHLVVLNKV 118

Query: 330 DL 331
           DL
Sbjct: 119 DL 120


>gi|312965768|ref|ZP_07779995.1| putative GTPase [Escherichia coli 2362-75]
 gi|331669760|ref|ZP_08370606.1| conserved hypothetical protein [Escherichia coli TA271]
 gi|312289588|gb|EFR17481.1| putative GTPase [Escherichia coli 2362-75]
 gi|331063428|gb|EGI35341.1| conserved hypothetical protein [Escherichia coli TA271]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHSVIHYEPVIGIMGKSGTGKSSLCNAIFQSHICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            + G TR    + L +    + + D  GI ET  
Sbjct: 68  PLNGCTRQAHRLTLQIGERRMTLVDLPGIGETPQ 101


>gi|283786852|ref|YP_003366717.1| GTP-binding protein [Citrobacter rodentium ICC168]
 gi|282950306|emb|CBG89953.1| GTP-binding protein [Citrobacter rodentium ICC168]
          Length = 426

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 33/205 (16%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +     QG+   I  +   + ++G++NAGKS+LFN + +  V     +  T    L  ID
Sbjct: 181 VEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNQITEARVYAADQLFATLDPTLRRID 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
           +   G  V ++DT G IR    D+V     K T  E   A L+L    +    ++   +N
Sbjct: 241 VADVGETV-LADTVGFIRHLPHDLV--AAFKATLQETRQATLLL---HVVDAADVRVQEN 294

Query: 320 IDFI---------------FIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELI 355
           ID +                +  K D+   +    D           +S+ TG G+ +L 
Sbjct: 295 IDAVDTVLEEIDAHEIPTLMVMNKIDMLDDFAPRIDRDEENKPIRVWLSAQTGAGIPQLF 354

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHL 380
             +   LS +  +    +P  +  L
Sbjct: 355 QALTERLSGEVAQHTLRLPPQEGRL 379


>gi|251788699|ref|YP_003003420.1| GTP-binding protein Era [Dickeya zeae Ech1591]
 gi|247537320|gb|ACT05941.1| GTP-binding protein Era [Dickeya zeae Ech1591]
          Length = 301

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 37/193 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  + + +  EG Y     DT G+   
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRI-MGIHTEGPYQAIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I EK  I R             L    +   I   + I F+  GT       +T++ +
Sbjct: 68  --IEEKRAINR-------------LMNRAASSSIGDVELIIFVVEGTH------WTDDDE 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++    +    L  INK+ ++ ++K K LP        H+  LS+ + +L++  ++ E
Sbjct: 107 MVVNKLREQKAPVLLAINKVDNV-ADKTKLLP--------HIQMLSEKMNFLDVVPISAE 157

Query: 398 KDCGLDIIAENLR 410
           K   +D IA  +R
Sbjct: 158 KGTHVDTIASIVR 170


>gi|254582426|ref|XP_002497198.1| ZYRO0D17666p [Zygosaccharomyces rouxii]
 gi|238940090|emb|CAR28265.1| ZYRO0D17666p [Zygosaccharomyces rouxii]
          Length = 472

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    +L+       
Sbjct: 282 RKQISVGFIGYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLMKRIFLIDCPGIVP 341

Query: 277 IRETDDIVEKEGIKRTFLEVEN 298
              TD+  E++ + R  + VEN
Sbjct: 342 PSSTDN--EQDILLRGVVRVEN 361


>gi|237842099|ref|XP_002370347.1| nucleolar GTP-binding protein NOG2, putative [Toxoplasma gondii
           ME49]
 gi|211968011|gb|EEB03207.1| nucleolar GTP-binding protein NOG2, putative [Toxoplasma gondii
           ME49]
          Length = 641

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ NAL  K V     IPG TR    + L    YL+   D  G
Sbjct: 340 RKHVSVGFIGYPNVGKSSIINALRSKQVCRAAPIPGETRVWQYVALTKRLYLI---DCPG 396

Query: 277 I 277
           I
Sbjct: 397 I 397


>gi|170287887|ref|YP_001738125.1| GTP-binding protein Era [Thermotoga sp. RQ2]
 gi|170175390|gb|ACB08442.1| GTP-binding protein Era [Thermotoga sp. RQ2]
          Length = 301

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDT 274
           I++G+ + + G  N GKS+  N +  + V IV+D P TTR+ +  I  D +  ++ + DT
Sbjct: 4   IKSGF-VALAGKPNVGKSTFINVVMGRKVVIVSDKPQTTRNRINCIYTDKDSQIIFV-DT 61

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +K     ++  DLIL +
Sbjct: 62  PGIHKPLHRLGEYMVKAAVQALKGVDLILFM 92


>gi|126700893|ref|YP_001089790.1| putative ferrous iron transport protein B [Clostridium difficile
           630]
 gi|255308346|ref|ZP_05352517.1| putative ferrous iron transport protein B [Clostridium difficile
           ATCC 43255]
 gi|115252330|emb|CAJ70171.1| Ferrous iron transport protein B [Clostridium difficile]
          Length = 648

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 10/79 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIR 278
           + +LG+ N GK+++FN L   +   V + PG T +        EG+L   +K+ D  GI 
Sbjct: 4   VALLGNPNVGKTTVFNLLTGSN-QYVGNWPGVTIE------KKEGFLGKEIKVVDLPGIY 56

Query: 279 ETDDIVEKEGIKRTFLEVE 297
             D    +E + +++LE E
Sbjct: 57  AMDTFSNEEKVSKSYLENE 75


>gi|51473248|ref|YP_067005.1| GTPase EngB [Rickettsia typhi str. Wilmington]
 gi|81610845|sp|Q68XW9|ENGB_RICTY RecName: Full=Probable GTP-binding protein EngB
 gi|51459560|gb|AAU03523.1| probable GTP-binding protein EngB [Rickettsia typhi str.
           Wilmington]
          Length = 214

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 8/54 (14%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDV-------LTIDLDLEGY 267
           IV +G SN GKSS+ N +   K +A V++IPG TR +         I +DL GY
Sbjct: 44  IVFVGKSNVGKSSIINTICNNKSLAKVSNIPGRTRQINFFNIIDKLIIVDLPGY 97


>gi|326492313|dbj|BAK01940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 592

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I+G  N GKSSL N+L +  V  V   PG TR +  + LD +   VK+ D  G+
Sbjct: 260 IVGLPNVGKSSLINSLKRSRVVNVGSTPGVTRSMQEVQLDKK---VKLLDCPGV 310


>gi|319956689|ref|YP_004167952.1| ribosome biogenesis GTP-binding protein ysxc [Nitratifractor
           salsuginis DSM 16511]
 gi|319419093|gb|ADV46203.1| ribosome biogenesis GTP-binding protein YsxC [Nitratifractor
           salsuginis DSM 16511]
          Length = 206

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTID----LDLEGYLVKISDTAG 276
           +V LG SN GKSS  N LA +K++A  +  PG TR +   D    LD + Y V+  D  G
Sbjct: 32  VVFLGRSNVGKSSTINLLAGRKNLAKSSATPGKTRLINFFDVGYKLDDKDYTVRFVDLPG 91


>gi|317403345|gb|EFV83858.1| GTP-binding protein HflX [Achromobacter xylosoxidans C54]
          Length = 368

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 6/85 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAG-IRE 279
           + ++G++NAGKS+LFNAL + D     D    T D  T  + +EG   V +SDT G IR+
Sbjct: 192 VSLVGYTNAGKSTLFNALTRADT-YAADQLFATLDTTTRRIWIEGAGNVVVSDTVGFIRD 250

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL 303
              D++     + T  E  +ADL+L
Sbjct: 251 LPHDLI--AAFRATLEETVHADLLL 273


>gi|255292983|dbj|BAH90080.1| GTP-binding protein [uncultured bacterium]
 gi|255293015|dbj|BAH90111.1| GTP-binding protein Era [uncultured bacterium]
          Length = 322

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 22/146 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+   + G  NAGKS+L NAL    +AI +  P TTR  +   +      + + D
Sbjct: 18  EGFRSGFACFV-GRPNAGKSTLTNALVGSKIAITSSKPQTTRHAIRGIVHRADAQMVLID 76

Query: 274 TAGIRETDDIVEK---EGIKRTFLEVENADLIL------------LLKEINSKKEISFPK 318
           T G+ +   ++ +   + +  T+ EV+   + L            L+ +I        P 
Sbjct: 77  TPGLHKPRTLLGERLNDLVHETWSEVDVIGVCLPSDQRIGPGDTYLVSQIA-----ELPH 131

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLIS 344
               + + TKSDL S      DHL+S
Sbjct: 132 RPKLVALATKSDLVSG-ERMRDHLVS 156


>gi|240104509|pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
           With Dgdp Bound
          Length = 368

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 9/70 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           E  R G  + ++G +N GKS+  N   K      ++V   +  PGTT D++ I LD E  
Sbjct: 155 EYYRGGKDVYVVGCTNVGKSTFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214

Query: 268 LVKISDTAGI 277
           L    DT GI
Sbjct: 215 LY---DTPGI 221


>gi|238019235|ref|ZP_04599661.1| hypothetical protein VEIDISOL_01099 [Veillonella dispar ATCC 17748]
 gi|237863934|gb|EEP65224.1| hypothetical protein VEIDISOL_01099 [Veillonella dispar ATCC 17748]
          Length = 299

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + ++G  N GKS+L NAL    +AIV+D   TTR+ +      E   +   D
Sbjct: 5   EHFKSGF-VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDEAKQIVFMD 63

Query: 274 TAGI 277
           T G+
Sbjct: 64  TPGV 67


>gi|218677582|ref|ZP_03525479.1| GTP-binding protein Era [Rhizobium etli CIAT 894]
          Length = 301

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 2/106 (1%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           + DI++  +Q   G    +G+ + ++G +NAGKS+L N L    V+IV+    TTR ++ 
Sbjct: 6   EEDIAAEAAQETNGPT-HSGF-VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVR 63

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
                +   +   DT GI +    +++  +   +   ++ADLI+LL
Sbjct: 64  GIAIHDNAQIVFMDTPGIFKPRRRLDRAMVTSAWGGAKDADLIVLL 109


>gi|170679951|ref|YP_001746711.1| putative GTPase [Escherichia coli SMS-3-5]
 gi|170517669|gb|ACB15847.1| putative GTPase [Escherichia coli SMS-3-5]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHSVIHYEPVIGIMGKSGTGKSSLCNAIFQSHICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305
            + G TR    + L +    + + D  GI ET     E   + R  L     DLI+ +
Sbjct: 68  PLNGCTRQAHRLTLQIGERRMTLVDLPGIGETPQHDQEYRALYRQLL--PEVDLIIWI 123


>gi|153806695|ref|ZP_01959363.1| hypothetical protein BACCAC_00966 [Bacteroides caccae ATCC 43185]
 gi|149131372|gb|EDM22578.1| hypothetical protein BACCAC_00966 [Bacteroides caccae ATCC 43185]
          Length = 201

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 17/174 (9%)

Query: 225 LGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           +G SN GKSSL N L A+K +A+ +  PG T  +    ++   YLV +      R     
Sbjct: 29  IGRSNVGKSSLINMLTARKGLAMTSATPGKTMLINHFLINKNWYLVDLPGYGYARRGQK- 87

Query: 284 VEKEGIKRTFLE---VENADLILLLKEINSKKEISFPKNIDFIF---IGTKSDLYSTYTE 337
             K+ I RT +E   +E   +  L   I+S+ E   P+NID  F   +G     +S    
Sbjct: 88  -GKDQI-RTIIEDYILEREQMTNLFVLIDSRLE---PQNIDLEFMEWLGENGIPFSIIFT 142

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
           + D L     G  L+  +N     LS ++++LP    S   +    ++ + Y+E
Sbjct: 143 KADKL----KGGRLKMNVNAYLRELSKQWEELPPYFISSSENRTGRTEILNYIE 192


>gi|126662689|ref|ZP_01733688.1| GTP-binding protein HflX [Flavobacteria bacterium BAL38]
 gi|126626068|gb|EAZ96757.1| GTP-binding protein HflX [Flavobacteria bacterium BAL38]
          Length = 407

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK-----ISDTA 275
           ++ ++G++N GKS+L NA+ K DV +   +        T+D  +   ++K     +SDT 
Sbjct: 201 RVALVGYTNVGKSTLMNAVGKSDVFVENKL------FATLDTTVRKTVIKNLPFLLSDTV 254

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           G          E  K T  EV  ADL+L + +I+
Sbjct: 255 GFIRKLPTQLVESFKSTLDEVREADLLLHVVDIS 288


>gi|119472911|ref|XP_001258441.1| GTP binding protein (EngB), putative [Neosartorya fischeri NRRL
           181]
 gi|119406593|gb|EAW16544.1| GTP binding protein (EngB), putative [Neosartorya fischeri NRRL
           181]
          Length = 321

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 13/90 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-------------IDLDLEGYL 268
           +  LG SN GKSSL NA+  K++   +  PG TR++               + LD+ GY 
Sbjct: 99  VAFLGRSNVGKSSLLNAIMGKEMCWTSSKPGRTREMNAFGIGGTKGGESKIVLLDMPGYG 158

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
                  GI     +  +  ++R F+ +++
Sbjct: 159 KGSRTEWGIEILKYLQGRRQLRRAFILIDS 188


>gi|109130879|ref|XP_001090251.1| PREDICTED: guanine nucleotide binding protein-like 3
           (nucleolar)-like isoform 2 [Macaca mulatta]
          Length = 581

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 244 RLGEV-RTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGITKFMQEVYLD---KFIR 299

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 300 LLDAPGI 306


>gi|254976873|ref|ZP_05273345.1| putative ferrous iron transport protein B [Clostridium difficile
           QCD-66c26]
 gi|255094260|ref|ZP_05323738.1| putative ferrous iron transport protein B [Clostridium difficile
           CIP 107932]
 gi|255316013|ref|ZP_05357596.1| putative ferrous iron transport protein B [Clostridium difficile
           QCD-76w55]
 gi|255518670|ref|ZP_05386346.1| putative ferrous iron transport protein B [Clostridium difficile
           QCD-97b34]
 gi|255651792|ref|ZP_05398694.1| putative ferrous iron transport protein B [Clostridium difficile
           QCD-37x79]
 gi|260684818|ref|YP_003216103.1| putative ferrous iron transport protein B [Clostridium difficile
           CD196]
 gi|260688476|ref|YP_003219610.1| putative ferrous iron transport protein B [Clostridium difficile
           R20291]
 gi|306521581|ref|ZP_07407928.1| putative ferrous iron transport protein B [Clostridium difficile
           QCD-32g58]
 gi|260210981|emb|CBA66264.1| putative ferrous iron transport protein B [Clostridium difficile
           CD196]
 gi|260214493|emb|CBE06982.1| putative ferrous iron transport protein B [Clostridium difficile
           R20291]
          Length = 648

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 10/79 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIR 278
           + +LG+ N GK+++FN L   +   V + PG T +        EG+L   +K+ D  GI 
Sbjct: 4   VALLGNPNVGKTTVFNLLTGSN-QYVGNWPGVTIE------KKEGFLGKEIKVVDLPGIY 56

Query: 279 ETDDIVEKEGIKRTFLEVE 297
             D    +E + +++LE E
Sbjct: 57  AMDTFSNEEKVSKSYLENE 75


>gi|42782784|ref|NP_980031.1| GTP-binding protein [Bacillus cereus ATCC 10987]
 gi|42738711|gb|AAS42639.1| GTP-binding protein [Bacillus cereus ATCC 10987]
          Length = 424

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|226942903|ref|YP_002797976.1| GTP-binding protein HflX [Azotobacter vinelandii DJ]
 gi|226717830|gb|ACO77001.1| GTP-binding protein HflX [Azotobacter vinelandii DJ]
          Length = 433

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           + ++G++NAGKS+LFNAL    V     +  T    L  ++LD  G LV ++DT G IR 
Sbjct: 201 VSLVGYTNAGKSTLFNALTASGVYAANQLFATLDPTLRRLELDDLGALV-LADTVGFIRH 259

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
               +  E  + T  E  N+DL+L
Sbjct: 260 LPHKL-VEAFRATLEESSNSDLLL 282


>gi|326495090|dbj|BAJ85641.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326510693|dbj|BAJ87563.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 592

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I+G  N GKSSL N+L +  V  V   PG TR +  + LD +   VK+ D  G+
Sbjct: 260 IVGLPNVGKSSLINSLKRSRVVNVGSTPGVTRSMQEVQLDKK---VKLLDCPGV 310


>gi|302332849|gb|ADL23042.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAK+ +A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKV---GNALQLLDTPGI 175


>gi|302391411|ref|YP_003827231.1| GTP-binding protein Era [Acetohalobium arabaticum DSM 5501]
 gi|302203488|gb|ADL12166.1| GTP-binding protein Era [Acetohalobium arabaticum DSM 5501]
          Length = 306

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI T    TTR+ L   L  +   +   DT G+    
Sbjct: 18  VTVIGQPNVGKSTLINHLIGQKIAITTPKKQTTRNKLQCILTRDNAQLIFIDTPGVHRPK 77

Query: 282 DIVEKEGIKRTFLEVENADLILLL-----------KEINSK-KEISFP-----KNIDFIF 324
           D + +  +   +  ++  +LI  +           ++IN++   I  P       ID + 
Sbjct: 78  DKMGEYMVDTAYKALKKVELIYFMVDAQKGITDLERKINNQLSGIQTPTIIVLNKIDLVS 137

Query: 325 IGTKSDLYSTYTE--EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                D+  +     +Y  LI  S+ TGE    LI+K   +L +  K  P  + + +   
Sbjct: 138 KAKLKDVIESCRRLGDYAELIPVSAETGENTNTLIDKSIELLPDGPKYYPEDMVTDQIEQ 197

Query: 381 YHLSQTVR 388
           + +++ +R
Sbjct: 198 FVITELIR 205


>gi|302187217|ref|ZP_07263890.1| GTP-binding protein, HSR1-related [Pseudomonas syringae pv.
           syringae 642]
          Length = 462

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGI 277
           K+ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  LV++ DT G+
Sbjct: 11  KLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVDGEALVELYDTPGL 69


>gi|282918942|ref|ZP_06326677.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus C427]
 gi|282316752|gb|EFB47126.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus C427]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAK+ +A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKV---GNALQLLDTPGI 175


>gi|254524566|ref|ZP_05136621.1| GTP-binding protein [Stenotrophomonas sp. SKA14]
 gi|219722157|gb|EED40682.1| GTP-binding protein [Stenotrophomonas sp. SKA14]
          Length = 200

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           G ++   G SNAGKSS  NAL +++ +A V+  PG T+ ++   +  + +LV +
Sbjct: 25  GAEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQITPDAHLVDL 78


>gi|32265532|ref|NP_859564.1| ferrous ion uptake system protein [Helicobacter hepaticus ATCC
           51449]
 gi|32261580|gb|AAP76630.1| ferrous ion uptake system protein [Helicobacter hepaticus ATCC
           51449]
          Length = 731

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           IV +G  N GKSSL N +    +  V +  G T +     L  +GY ++I D  GI    
Sbjct: 6   IVCVGQPNVGKSSLINKICGVHLK-VGNFTGVTIEKSEAQLTYKGYNLRIIDLPGIYSLN 64

Query: 278 -RETDDIVEKEGIKRTFLEVENADLIL 303
               +D   +E + + FLE E+ D+IL
Sbjct: 65  DYSLNDYSLEERLTKQFLENEDYDVIL 91


>gi|21231170|ref|NP_637087.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768822|ref|YP_243584.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188991937|ref|YP_001903947.1| GTP-binding protein, probable [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112810|gb|AAM41011.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574154|gb|AAY49564.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733697|emb|CAP51902.1| GTP-binding protein, probable [Xanthomonas campestris pv.
           campestris]
          Length = 439

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE 279
           +I ++G++NAGKS+LFNAL   D A   D    T D     + L G    ++DT G +R+
Sbjct: 200 RIALVGYTNAGKSTLFNALTGAD-AYAADQLFATLDPTVRRIALPGGSAVLADTVGFVRD 258

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL 303
              ++V     + T  E  +ADL+L
Sbjct: 259 LPHELV--AAFRSTLSEARDADLLL 281


>gi|21282855|ref|NP_645943.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486082|ref|YP_043303.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208111|ref|ZP_06924542.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300912192|ref|ZP_07129635.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|21204294|dbj|BAB94991.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244525|emb|CAG42954.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887354|gb|EFH26256.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300886438|gb|EFK81640.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAK+ +A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKV---GNALQLLDTPGI 175


>gi|157156484|ref|YP_001464399.1| putative GTPase [Escherichia coli E24377A]
 gi|157078514|gb|ABV18222.1| putative GTPase [Escherichia coli E24377A]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHSVIHYEPVIGIMGKSGTGKSSLCNAIFQSHICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            + G TR    + L +    + + D  GI ET  
Sbjct: 68  PLNGCTRQAHRLTLQIGERRMTLVDLPGIGETPQ 101


>gi|310643039|ref|YP_003947797.1| gtp-binding protein era-like protein [Paenibacillus polymyxa SC2]
 gi|309247989|gb|ADO57556.1| GTP-binding protein era-like protein [Paenibacillus polymyxa SC2]
          Length = 300

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I+G  N GKS+L N +  + +AI++D P TTR+ +      E   +   DT GI +
Sbjct: 11  VAIVGRPNVGKSTLMNHVIGQKIAIMSDKPQTTRNKIHGVYTTEDTQIVFLDTPGIHK 68


>gi|296451929|ref|ZP_06893645.1| FeoB family ferrous iron (Fe2+) uptake protein [Clostridium
           difficile NAP08]
 gi|296879678|ref|ZP_06903653.1| FeoB family ferrous iron (Fe2+) uptake protein [Clostridium
           difficile NAP07]
 gi|296259243|gb|EFH06122.1| FeoB family ferrous iron (Fe2+) uptake protein [Clostridium
           difficile NAP08]
 gi|296429267|gb|EFH15139.1| FeoB family ferrous iron (Fe2+) uptake protein [Clostridium
           difficile NAP07]
          Length = 648

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 10/79 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIR 278
           + +LG+ N GK+++FN L   +   V + PG T +        EG+L   +K+ D  GI 
Sbjct: 4   VALLGNPNVGKTTVFNLLTGSN-QYVGNWPGVTIE------KKEGFLGKEIKVVDLPGIY 56

Query: 279 ETDDIVEKEGIKRTFLEVE 297
             D    +E + +++LE E
Sbjct: 57  AMDTFSNEEKVSKSYLENE 75


>gi|242055911|ref|XP_002457101.1| hypothetical protein SORBIDRAFT_03g001220 [Sorghum bicolor]
 gi|241929076|gb|EES02221.1| hypothetical protein SORBIDRAFT_03g001220 [Sorghum bicolor]
          Length = 604

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 30/59 (50%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ I+G  N GKS+L N L ++   +V    G TRD +      +   V + DTAG  E
Sbjct: 303 QLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTRDSIRAQFQFDNRTVYLVDTAGWME 361



 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPG--TTRDVLTIDLDLEGYLVKISDTAGI 277
           ++++G  N GKS+LFN   ++  A+V + PG   TRD+      L     ++ D+AG+
Sbjct: 100 VILVGRPNVGKSALFNRFIRRREALVYNTPGDHVTRDIREGVAKLGDLRFRVLDSAGL 157


>gi|226492268|ref|NP_001142481.1| hypothetical protein LOC100274701 [Zea mays]
 gi|195604910|gb|ACG24285.1| hypothetical protein [Zea mays]
          Length = 594

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G  N GKSSL N+L +  V  V   PG TR +  + LD +   VK+ D  G+
Sbjct: 268 VGIVGLPNVGKSSLINSLKRSRVVNVGSTPGITRSMQEVQLDKK---VKLLDCPGV 320


>gi|153865160|ref|ZP_01997782.1| Small GTP-binding protein [Beggiatoa sp. SS]
 gi|152145350|gb|EDN72219.1| Small GTP-binding protein [Beggiatoa sp. SS]
          Length = 153

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 25/44 (56%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           +   KI I+G  N GKS+L N +   +  I  D PGTTRD + I
Sbjct: 94  KQSIKIAIIGRPNVGKSTLVNRILGYERVITFDQPGTTRDSIFI 137


>gi|119613590|gb|EAW93184.1| guanine nucleotide binding protein-like 3 (nucleolar)-like, isoform
           CRA_b [Homo sapiens]
          Length = 516

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 179 RLGEV-RTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGITKFMQEVYLD---KFIR 234

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 235 LLDAPGI 241


>gi|77463363|ref|YP_352867.1| putative GTP-binding protein [Rhodobacter sphaeroides 2.4.1]
 gi|77387781|gb|ABA78966.1| Putative GTP-binding protein [Rhodobacter sphaeroides 2.4.1]
          Length = 416

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 29/165 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +   DV +  D+   T D     + L  G  V +SDT G    
Sbjct: 198 VALVGYTNAGKSTLFNRMTGADV-LAKDMLFATLDPTMRGVTLPSGRKVILSDTVGF--I 254

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEI----------------------NSKKEISF 316
            D+  +     + T  EV  ADLIL +++I                       +  ++  
Sbjct: 255 SDLPTQLVAAFRATLEEVLEADLILHVRDIAHPETAEQAADVAEILQSLGVKGATPQVEV 314

Query: 317 PKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIKS 360
              +D +       L +   + E    +S+ TGEGL +L+  + +
Sbjct: 315 WNKLDLVEGAAHEQLLAQAAKSETIFALSALTGEGLPDLLEAVSA 359


>gi|312796099|ref|YP_004029021.1| GTP-binding protein hflX [Burkholderia rhizoxinica HKI 454]
 gi|312167874|emb|CBW74877.1| GTP-binding protein hflX [Burkholderia rhizoxinica HKI 454]
          Length = 415

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 40/182 (21%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG-IRE 279
           + ++G++NAGKS+LFNAL K   A   D    T D  +  + L E   V +SDT G IR 
Sbjct: 193 VSLVGYTNAGKSTLFNALTKAQ-AYAADQLFATLDTTSRRVYLGEAGNVVVSDTVGFIR- 250

Query: 280 TDDIVEK--EGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPK 318
             D+  +     + T  E  +ADL+L                   +L+EI +    S P+
Sbjct: 251 --DLPHQLVAAFRATLEETVHADLLLHIVDAASAVRADQIEQVNDVLREIGAA---SIPQ 305

Query: 319 NIDFIFIGTKSDLYSTYTE----EYDHL----ISSFTGEGLEELINKIKSIL--SNKFKK 368
            + F  I    +L S        EY ++    +S+ TG+GL+ L + +  +   +  FK+
Sbjct: 306 ILVFNKIDQVPELASRADRVERNEYGNITRVFLSARTGQGLDALRDAVAEVALGAQAFKR 365

Query: 369 LP 370
            P
Sbjct: 366 DP 367


>gi|326791737|ref|YP_004309558.1| small GTP-binding protein [Clostridium lentocellum DSM 5427]
 gi|326542501|gb|ADZ84360.1| small GTP-binding protein [Clostridium lentocellum DSM 5427]
          Length = 396

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276
           N   I + G  N+GKSSL NAL  +++A+V+   GTT D +   +++ G    +  DTAG
Sbjct: 10  NRLHIGLYGKRNSGKSSLINALTGQEIALVSKEAGTTTDPVYKSMEIYGIGPCVFIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
             +T  +  K  +++T    +  D+ L++
Sbjct: 70  FDDTGSL-GKLRVEKTKEATQKTDIALIV 97


>gi|284925919|gb|ADC28271.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni IA3902]
          Length = 291

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           G+ E+   + +  ++     + + D+IL +  +
Sbjct: 60  GLHESGATLNQLLVQSAIKSIGDCDVILFVASV 92


>gi|288574881|ref|ZP_06393238.1| GTPase-like protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570622|gb|EFC92179.1| GTPase-like protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 378

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI++LG +N GKS+L + L   D   ++ +PGTT  +  +        +   D  G++
Sbjct: 160 GSKILLLGTTNVGKSTLLSGLTGDDTPTISRLPGTTLGITQVKSRHSA--ITYVDVPGLK 217

Query: 279 ETDDIVEK 286
           E +  + K
Sbjct: 218 EVNPWLGK 225


>gi|218192390|gb|EEC74817.1| hypothetical protein OsI_10639 [Oryza sativa Indica Group]
          Length = 348

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 223 VILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
            +LG SN GKSSL NAL  +K+ A+ +  PG T+ +    ++   YLV +    G+   D
Sbjct: 136 AVLGRSNVGKSSLINALIRRKEAALTSKKPGKTQTINHFLVNKSWYLVDLPGY-GMYHND 194

Query: 282 DIVE 285
            I++
Sbjct: 195 KIID 198


>gi|57651812|ref|YP_186118.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           COL]
 gi|87162211|ref|YP_493833.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194951|ref|YP_499751.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151221365|ref|YP_001332187.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509409|ref|YP_001575068.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142033|ref|ZP_03566526.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|258452542|ref|ZP_05700548.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5948]
 gi|262048141|ref|ZP_06021028.1| hypothetical protein SAD30_1917 [Staphylococcus aureus D30]
 gi|262051870|ref|ZP_06024086.1| hypothetical protein SA930_1420 [Staphylococcus aureus 930918-3]
 gi|269202859|ref|YP_003282128.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282920027|ref|ZP_06327756.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           A9765]
 gi|284024236|ref|ZP_06378634.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           132]
 gi|294848238|ref|ZP_06788985.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           A9754]
 gi|296274800|ref|ZP_06857307.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           MR1]
 gi|304381193|ref|ZP_07363846.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|57285998|gb|AAW38092.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
           COL]
 gi|87128185|gb|ABD22699.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202509|gb|ABD30319.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374165|dbj|BAF67425.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368218|gb|ABX29189.1| possible GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257859760|gb|EEV82602.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5948]
 gi|259160271|gb|EEW45299.1| hypothetical protein SA930_1420 [Staphylococcus aureus 930918-3]
 gi|259163707|gb|EEW48262.1| hypothetical protein SAD30_1917 [Staphylococcus aureus D30]
 gi|262075149|gb|ACY11122.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940735|emb|CBI49116.1| putative GTPase protein [Staphylococcus aureus subsp. aureus TW20]
 gi|282594743|gb|EFB99727.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           A9765]
 gi|283470456|emb|CAQ49667.1| GTPase family [Staphylococcus aureus subsp. aureus ST398]
 gi|294825038|gb|EFG41460.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           A9754]
 gi|304340176|gb|EFM06117.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|315198483|gb|EFU28812.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140941|gb|EFW32788.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144344|gb|EFW36110.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313912|gb|AEB88325.1| Possible GTP-binding protein [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329728952|gb|EGG65366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAK+ +A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKV---GNALQLLDTPGI 175


>gi|52080207|ref|YP_078998.1| ribosomal biogenesis GTPase [Bacillus licheniformis ATCC 14580]
 gi|52785584|ref|YP_091413.1| ribosomal biogenesis GTPase [Bacillus licheniformis ATCC 14580]
 gi|319646014|ref|ZP_08000244.1| YlqF protein [Bacillus sp. BT1B_CT2]
 gi|52003418|gb|AAU23360.1| GTP-binding domain protein [Bacillus licheniformis ATCC 14580]
 gi|52348086|gb|AAU40720.1| YlqF [Bacillus licheniformis ATCC 14580]
 gi|317391764|gb|EFV72561.1| YlqF protein [Bacillus sp. BT1B_CT2]
          Length = 283

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     + +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINRLAKKNIAKTGDRPGVTTAQQWVKV---GKELELLDTPGI 175


>gi|82750846|ref|YP_416587.1| ribosomal biogenesis GTPase [Staphylococcus aureus RF122]
 gi|82656377|emb|CAI80796.1| probable GTP-binding protein [Staphylococcus aureus RF122]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAK+ +A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKV---GNALQLLDTPGI 175


>gi|313888957|ref|ZP_07822617.1| ribosome biogenesis GTPase Era [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845130|gb|EFR32531.1| ribosome biogenesis GTPase Era [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 301

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 24/205 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++GY + ++G  N GKS+L NA+  + ++ ++  P TTR  +T     E   +   DT G
Sbjct: 7   KSGY-VSVIGRPNVGKSTLLNAIIGEKISAISSKPQTTRQNITFIHTDEDAQIIFLDTPG 65

Query: 277 IRETDDIV-------EKEGIKRTFLEVENAD-----------LILLLKEINSKKEISFPK 318
           I++  + +        KEGI+ + +     D           +I +LKE   K  I    
Sbjct: 66  IQKPKNKLGEFMLTESKEGIEDSDVITYIVDTSKKIGRAERSIIDILKEYKGKLPIILLI 125

Query: 319 N-IDFIFIGTKSDLYSTYTEE--YDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           N +D I      ++ S Y EE  +D +  IS+   +G++  +  +K  L       P  +
Sbjct: 126 NKVDTIRKDELLEIISMYAEEEIFDDIIPISAMKNDGVDIYLETLKKFLKPGPMYYPEDM 185

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            + K   + +++ +R   +  LNE+
Sbjct: 186 ITDKNERFIVAEIIREKGLIYLNEE 210


>gi|312131517|ref|YP_003998857.1| gtp-binding protein era [Leadbetterella byssophila DSM 17132]
 gi|311908063|gb|ADQ18504.1| GTP-binding protein Era [Leadbetterella byssophila DSM 17132]
          Length = 295

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 30/168 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-------TIDLDLEGYLV 269
           R G+ I I+G  N GKS+L N L  + ++I+T    TTR  +       T + D +   +
Sbjct: 5   RAGF-ISIVGKPNVGKSTLMNQLVGEKLSIITSKAQTTRHRIMGIVNGETPEFDFQ---M 60

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----ISFPKNI--DFI 323
             SDT GI +    + K  ++     +E+ D+IL + +I  K +    I   KN     I
Sbjct: 61  VYSDTPGIIKPVYELHKSMMEFVHGSIEDGDVILFVTDIYEKYDEEDVIERLKNATSPII 120

Query: 324 FIGTKSDLYST--YTEEYDHL-----------ISSFTGEGLEELINKI 358
            I  K DL       E+  H            +S+  GEG+ +L+++I
Sbjct: 121 LIINKIDLAKPEDIEEKIQHWKAVFQPTEILTLSALQGEGVPQLMDRI 168


>gi|299146810|ref|ZP_07039878.1| ferrous iron transport protein B [Bacteroides sp. 3_1_23]
 gi|298517301|gb|EFI41182.1| ferrous iron transport protein B [Bacteroides sp. 3_1_23]
          Length = 828

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 181 EEDVQNFSSKEV----LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           EE+ +  + K V    L + L +K +    ++ GK     R    + ++G+ N+GK+SLF
Sbjct: 74  EEEAKKLAEKTVYHEGLPEDLSVKEEDMKRLALGK-----RRTINVALVGNPNSGKTSLF 128

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N LA      V +  G T D      D EGY  +I D  G         +E   R  +  
Sbjct: 129 N-LASGAHEHVGNYSGVTVDAKEGYFDFEGYHFRIVDLPGTYSLSAYTPEEIYVRRHIID 187

Query: 297 ENADLIL 303
           E  D+I+
Sbjct: 188 ETPDVII 194


>gi|229098307|ref|ZP_04229254.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-29]
 gi|229117324|ref|ZP_04246702.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-3]
 gi|228666224|gb|EEL21688.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-3]
 gi|228685205|gb|EEL39136.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-29]
          Length = 296

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + +K      +++G     IR     +I+G  N GKS+L N LAKK++A   D PG T  
Sbjct: 102 VLVKEKFDKMVAKGIRPRAIRA----LIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTA 157

Query: 257 VLTIDLDLEGYLVKISDTAGI 277
              I +   G  +++ DT GI
Sbjct: 158 QQWIKV---GKEMELLDTPGI 175


>gi|114331754|ref|YP_747976.1| GTP-binding protein Era [Nitrosomonas eutropha C91]
 gi|122313495|sp|Q0AF71|ERA_NITEC RecName: Full=GTPase Era
 gi|114308768|gb|ABI60011.1| GTP-binding protein Era [Nitrosomonas eutropha C91]
          Length = 296

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 12/125 (9%)

Query: 218 NGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISD 273
           +GYK   I I+G  N GKS+L N L K+ ++I +    TTR  +  I  D++   + + D
Sbjct: 4   SGYKAGYISIVGRPNVGKSTLLNHLIKQKISITSRKAQTTRHRIHGILTDVQSQFIFV-D 62

Query: 274 TAGIRETDDIVEKEGIKRTFLE-VENADLILLLKEI----NSKKEI--SFPKNIDFIFIG 326
           T G +        + + R  L+ +++ D+IL + E        +++    P+N+  I + 
Sbjct: 63  TPGFQMRHRSQLNQVMNRVVLQSMQDVDVILFVLEAGRFGREDEQVLEQLPRNLPVILVI 122

Query: 327 TKSDL 331
            K DL
Sbjct: 123 NKIDL 127


>gi|302804232|ref|XP_002983868.1| hypothetical protein SELMODRAFT_119375 [Selaginella moellendorffii]
 gi|300148220|gb|EFJ14880.1| hypothetical protein SELMODRAFT_119375 [Selaginella moellendorffii]
          Length = 330

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + GY + ++G  N GKS+L N +  + ++IVT  P TTR  +        Y + + DT G
Sbjct: 28  QAGY-VALIGKPNVGKSTLLNGIIGQKLSIVTAKPQTTRHRILGICSGPNYQMILYDTPG 86

Query: 277 I-----RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           +      + D+++ K     T     N+D +LL+ +I
Sbjct: 87  VITKQMHKLDELMMKSVRSATI----NSDCLLLIADI 119


>gi|282916493|ref|ZP_06324255.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus D139]
 gi|282319933|gb|EFB50281.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus D139]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAK+ +A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKV---GNALQLLDTPGI 175


>gi|260173565|ref|ZP_05759977.1| putative ferrous iron transport protein [Bacteroides sp. D2]
 gi|293372700|ref|ZP_06619082.1| ferrous iron transport protein B [Bacteroides ovatus SD CMC 3f]
 gi|315921833|ref|ZP_07918073.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|292632509|gb|EFF51105.1| ferrous iron transport protein B [Bacteroides ovatus SD CMC 3f]
 gi|313695708|gb|EFS32543.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 828

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 181 EEDVQNFSSKEV----LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           EE+ +  + K V    L + L +K +    ++ GK     R    + ++G+ N+GK+SLF
Sbjct: 74  EEEAKKLAEKTVYHEGLPEDLSVKEEDMKRLALGK-----RRTINVALVGNPNSGKTSLF 128

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N LA      V +  G T D      D EGY  +I D  G         +E   R  +  
Sbjct: 129 N-LASGAHEHVGNYSGVTVDAKEGYFDFEGYHFRIVDLPGTYSLSAYTPEEIYVRRHIID 187

Query: 297 ENADLIL 303
           E  D+I+
Sbjct: 188 ETPDVII 194


>gi|251777864|ref|ZP_04820784.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082179|gb|EES48069.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 198

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 45/177 (25%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR---------DVLTIDLDLEGY 267
           N  ++  +G SN GKSSL N+L  +K +A V+  PG TR         D   +DL   GY
Sbjct: 22  NRNEVAFVGRSNVGKSSLINSLTNRKKLAKVSGTPGKTRLINFFLINNDFYLVDLPGYGY 81

Query: 268 LVKIS----DTAGIRETDDIVEKEGIKRTFLEVEN-----ADLILLLKEINSKKEISFPK 318
             K+S    DT G      +  +E +KR    V++      D I++        E +   
Sbjct: 82  -AKVSKSEKDTWGKTIETYLSHREELKRIVCLVDSRHKPTGDDIMMY-------EWAKHF 133

Query: 319 NIDFIFIGTKSD-----------------LYSTYTEEYDHLISSFTGEGLEELINKI 358
             D + + TKSD                 L  T  +++ +  SS   +G EELI+K+
Sbjct: 134 GYDVVIVATKSDKLKNAEFKKSEKLIRDTLKLTKDDKF-YFYSSLNKKGTEELIDKL 189


>gi|225679850|gb|EEH18134.1| nucleolar GTP-binding protein [Paracoccidioides brasiliensis Pb03]
          Length = 559

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 322 RKQISVGFIGYPNTGKSSIINTLRKKKVCSVAPIPGETKVWQYITLMKRIYLI---DCPG 378

Query: 277 -IRETDDIVEKEGIKRTFLEVENAD 300
            +  +++  E++ + R  + VEN +
Sbjct: 379 VVPPSNNDTEEDILLRGVVRVENVE 403


>gi|255946970|ref|XP_002564252.1| Pc22g02080 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591269|emb|CAP97496.1| Pc22g02080 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 312

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           ++  LG SN GKSSL NA+  K++   +  PG TR++
Sbjct: 91  EVAFLGRSNVGKSSLLNAIMGKEICWTSSKPGRTREM 127


>gi|150005485|ref|YP_001300229.1| ribosome biogenesis GTP-binding protein YsxC [Bacteroides vulgatus
           ATCC 8482]
 gi|254884036|ref|ZP_05256746.1| GTPase EngB [Bacteroides sp. 4_3_47FAA]
 gi|294778688|ref|ZP_06744107.1| ribosome biogenesis GTP-binding protein YsxC [Bacteroides vulgatus
           PC510]
 gi|319640710|ref|ZP_07995424.1| GTP-binding protein engB [Bacteroides sp. 3_1_40A]
 gi|166225943|sp|A6L4J3|ENGB_BACV8 RecName: Full=Probable GTP-binding protein EngB
 gi|149933909|gb|ABR40607.1| putative GTP-binding protein [Bacteroides vulgatus ATCC 8482]
 gi|254836829|gb|EET17138.1| GTPase EngB [Bacteroides sp. 4_3_47FAA]
 gi|294447344|gb|EFG15925.1| ribosome biogenesis GTP-binding protein YsxC [Bacteroides vulgatus
           PC510]
 gi|317387672|gb|EFV68537.1| GTP-binding protein engB [Bacteroides sp. 3_1_40A]
          Length = 200

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 15/152 (9%)

Query: 225 LGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           +G SN GKSSL N LAK+  +A+ +  PG T  +    ++ E YLV +            
Sbjct: 29  IGRSNVGKSSLINMLAKRPKLAMTSSTPGKTLLINHFLINKEWYLVDLPGYGYASRGKKQ 88

Query: 284 VEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---IGTKSDLYSTYTEE 338
           VEK  + I+   LE E    + +L  I+ + E   P+ ID  F   +G     +S    +
Sbjct: 89  VEKIQQIIEDYILEREQMTNLFVL--IDCRLE---PQKIDLEFMEWLGENGVPFSIIFTK 143

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D L    T   +++ +NK    L+ ++++LP
Sbjct: 144 ADKL----TNGKVKDNVNKYLKKLTEQWEELP 171


>gi|119470392|ref|ZP_01613120.1| GTP-binding protein [Alteromonadales bacterium TW-7]
 gi|119446317|gb|EAW27593.1| GTP-binding protein [Alteromonadales bacterium TW-7]
          Length = 225

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 9/59 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---------DLEGY 267
            G ++   G SNAGKSS  NAL  + +A  +  PG T+ + T +L         DL GY
Sbjct: 27  TGIEVAFAGRSNAGKSSALNALTDQKLARTSKTPGRTQLINTFELADVDNMRLIDLPGY 85


>gi|84499799|ref|ZP_00998087.1| GTP-binding protein [Oceanicola batsensis HTCC2597]
 gi|84392943|gb|EAQ05154.1| GTP-binding protein [Oceanicola batsensis HTCC2597]
          Length = 216

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++   G SN GKSSL NAL   +++A  ++ PG T+++    L   GYLV +        
Sbjct: 46  EVCFAGRSNVGKSSLINALTGTRNLARASNTPGRTQEINYFTLGDRGYLVDLPGYGYANA 105

Query: 280 TDDIVEK 286
              +VEK
Sbjct: 106 PLPVVEK 112


>gi|325958782|ref|YP_004290248.1| ferrous iron transport protein B [Methanobacterium sp. AL-21]
 gi|325330214|gb|ADZ09276.1| ferrous iron transport protein B [Methanobacterium sp. AL-21]
          Length = 670

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y I + G++N GKS +FN L   +  I+ + PG T +     L  E   +++ D  GI  
Sbjct: 33  YTIALAGNANVGKSVVFNELTGSN-QIIGNWPGKTVERAVGKLLFESKCIEVIDLPGIYS 91

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                 +E + R ++  E  D+++
Sbjct: 92  FSTYSMEEIVSREYIAFEKPDVVI 115


>gi|299115211|emb|CBN74042.1| YihA6, YihA/EngB-like GTPase [Ectocarpus siliculosus]
          Length = 462

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 22/36 (61%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           I  LG SN GKSS+ N L  + VA V+  PG TR +
Sbjct: 285 IAFLGRSNVGKSSMLNTLFGEPVAKVSKTPGRTRKI 320


>gi|294793788|ref|ZP_06758925.1| GTP-binding protein Era [Veillonella sp. 3_1_44]
 gi|294455358|gb|EFG23730.1| GTP-binding protein Era [Veillonella sp. 3_1_44]
          Length = 307

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + ++G  N GKS+L NAL    +AIV+D   TTR+ +      E   +   D
Sbjct: 13  EHFKSGF-VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDESKQIVFMD 71

Query: 274 TAGIRE 279
           T G+ +
Sbjct: 72  TPGVHK 77


>gi|253731862|ref|ZP_04866027.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724272|gb|EES93001.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAK+ +A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKV---GNALQLLDTPGI 175


>gi|237785901|ref|YP_002906606.1| GTP-binding protein Era [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758813|gb|ACR18063.1| putative GTP-binding protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 310

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  +   + + DT G
Sbjct: 17  RSGF-VSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGVIHEDNAQIIVVDTPG 75

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ +   E +K T+ +V+
Sbjct: 76  LHRPRTLLGERLNEVVKDTYADVD 99


>gi|229820244|ref|YP_002881770.1| GTP-binding protein Era [Beutenbergia cavernae DSM 12333]
 gi|229566157|gb|ACQ80008.1| GTP-binding protein Era [Beutenbergia cavernae DSM 12333]
          Length = 312

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKIS 272
           E  R G+  V+ G  NAGKS+L NAL    VAI +  P TTR  +   + L +G LV + 
Sbjct: 13  EGFRAGFASVV-GRPNAGKSTLVNALVGTKVAITSGRPQTTRHTVRGIVHLPDGQLVLV- 70

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           DT G+             RT L     DL+L
Sbjct: 71  DTPGLHR----------PRTLLGRRLNDLVL 91


>gi|269127476|ref|YP_003300846.1| GTP-binding proten HflX [Thermomonospora curvata DSM 43183]
 gi|268312434|gb|ACY98808.1| GTP-binding proten HflX [Thermomonospora curvata DSM 43183]
          Length = 485

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 31/181 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + I G++NAGKSSL N L    V    A+   +  T R   T      G    ++DT G 
Sbjct: 265 VAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTVRRAQTPS----GRPFTLADTVGF 320

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---------KEINSK----KEISFPKNIDFI 323
           +R     +  E  + T  EV  ADLIL +          +I++     +EI   +  + +
Sbjct: 321 VRHLPHQL-VEAFRSTLEEVTQADLILHVVDGSDAEPEAQIDAVRQVLREIGADRVPELV 379

Query: 324 FIGTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            I  K+D     T       E    ++S+ TG G+EEL+  I++ L    +++   +P  
Sbjct: 380 VI-NKADAADPLTLARLRRREPGSVVVSARTGAGIEELMAAIEAELPEVGREVRVVLPYE 438

Query: 377 K 377
           +
Sbjct: 439 R 439


>gi|300361595|ref|ZP_07057772.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
           JV-V03]
 gi|300354214|gb|EFJ70085.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
           JV-V03]
          Length = 279

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 7/71 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           I++G    +IR    + I G  N GKS++ N +  ++ AIV D PG TR    +      
Sbjct: 113 IAKGASNPMIR----VAIAGIPNCGKSTIINRMVGRNAAIVGDKPGVTRGQSWLKTKTN- 167

Query: 267 YLVKISDTAGI 277
             V+I DT GI
Sbjct: 168 --VQILDTPGI 176


>gi|222110309|ref|YP_002552573.1| gtp-binding proten hflx [Acidovorax ebreus TPSY]
 gi|221729753|gb|ACM32573.1| GTP-binding proten HflX [Acidovorax ebreus TPSY]
          Length = 392

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAG- 276
           + I ++G++NAGKS+LFNAL K   A   D    T D  T  L L      V +SDT G 
Sbjct: 202 FNISLVGYTNAGKSTLFNALVKAR-AYAADQLFATLDTTTRHLYLGEAAGSVSLSDTVGF 260

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320
           IR+    +  +  + T  E  +ADL+L    +      +FP+ I
Sbjct: 261 IRDLPHGL-VDAFQATLQEAVDADLLL---HVVDAANPAFPEQI 300


>gi|193211890|ref|YP_001997843.1| ribosome biogenesis GTP-binding protein YsxC [Chlorobaculum parvum
           NCIB 8327]
 gi|238692673|sp|B3QQY9|ENGB_CHLP8 RecName: Full=Probable GTP-binding protein EngB
 gi|193085367|gb|ACF10643.1| small GTP-binding protein [Chlorobaculum parvum NCIB 8327]
          Length = 192

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 15/91 (16%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTR---------DVLTIDLDLEGYLVK 270
           +IV +G SN GKSSL N+L A+K +A  +  PG TR         ++  +DL   GY  K
Sbjct: 25  EIVFVGRSNVGKSSLLNSLCARKGLAKTSSTPGKTRLINYFLINENLYFVDLPGYGY-AK 83

Query: 271 IS----DTAGIRETDDIVEKEGIKRTFLEVE 297
           +     ++ G   TD +V+++ I    L V+
Sbjct: 84  VGHGERESWGKLLTDYVVKRDEIALVVLLVD 114


>gi|297584643|ref|YP_003700423.1| GTP-binding protein Era [Bacillus selenitireducens MLS10]
 gi|297143100|gb|ADH99857.1| GTP-binding protein Era [Bacillus selenitireducens MLS10]
          Length = 302

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGI 277
           ++G  N GKS+L N +  + +AI++D P TTR+ +  +  D  G +V I DT GI
Sbjct: 13  LVGRPNVGKSTLLNQVLGQKIAIMSDKPQTTRNRIQGVLTDERGQIVFI-DTPGI 66


>gi|126338015|ref|XP_001370987.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 567

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R   ++ ++G  N GKSSL N+L +     V   PG T+ +  + LD     V + D+ 
Sbjct: 246 LRTAIRVGVVGFPNVGKSSLINSLKRARACNVGATPGVTKCLQEVHLD---KYVTLLDSP 302

Query: 276 GIRETDDIVEKEGIKRTFLEVEN-ADLILLLKEI 308
           GI  +    +   I R  L++E  AD +  ++ I
Sbjct: 303 GIVLSPSTSDTALILRNCLKIEQLADPVTPVEAI 336


>gi|42519513|ref|NP_965443.1| GTP-binding protein YqeH [Lactobacillus johnsonii NCC 533]
 gi|41583801|gb|AAS09409.1| hypothetical protein LJ_1637 [Lactobacillus johnsonii NCC 533]
          Length = 369

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 222 IVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I  +G +N GKS+L NA+       KDV   +  PGTT D + I L    YL+   DT G
Sbjct: 169 IYFVGTTNVGKSTLINAIINMNSDLKDVITTSKFPGTTLDEIKIPLSNGHYLI---DTPG 225

Query: 277 IRETDDIV 284
           I   + + 
Sbjct: 226 ILNANQLA 233


>gi|49483406|ref|YP_040630.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425297|ref|ZP_05601722.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427957|ref|ZP_05604355.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430590|ref|ZP_05606972.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433351|ref|ZP_05609709.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436193|ref|ZP_05612240.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus M876]
 gi|282903798|ref|ZP_06311686.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905561|ref|ZP_06313416.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908536|ref|ZP_06316366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282910815|ref|ZP_06318618.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914020|ref|ZP_06321807.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus M899]
 gi|282924065|ref|ZP_06331741.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus C101]
 gi|283770306|ref|ZP_06343198.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           H19]
 gi|283957986|ref|ZP_06375437.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293501051|ref|ZP_06666902.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510013|ref|ZP_06668721.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus M809]
 gi|293526600|ref|ZP_06671285.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295427730|ref|ZP_06820362.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297591312|ref|ZP_06949950.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus MN8]
 gi|49241535|emb|CAG40221.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271754|gb|EEV03892.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274798|gb|EEV06285.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278718|gb|EEV09337.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281444|gb|EEV11581.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284475|gb|EEV14595.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus M876]
 gi|282314037|gb|EFB44429.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus C101]
 gi|282322088|gb|EFB52412.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325420|gb|EFB55729.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327598|gb|EFB57881.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330853|gb|EFB60367.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595416|gb|EFC00380.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus C160]
 gi|283460453|gb|EFC07543.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           H19]
 gi|283790135|gb|EFC28952.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290920672|gb|EFD97735.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096056|gb|EFE26317.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291466957|gb|EFF09475.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus M809]
 gi|295128088|gb|EFG57722.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297576198|gb|EFH94914.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus MN8]
 gi|298694536|gb|ADI97758.1| probable GTP-binding protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|312438379|gb|ADQ77450.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315194132|gb|EFU24525.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|323441021|gb|EGA98728.1| ribosomal biogenesis GTPase [Staphylococcus aureus O11]
 gi|323442338|gb|EGA99968.1| ribosomal biogenesis GTPase [Staphylococcus aureus O46]
 gi|329733564|gb|EGG69892.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAK+ +A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKV---GNALQLLDTPGI 175


>gi|329667752|gb|AEB93700.1| hypothetical protein LJP_1378c [Lactobacillus johnsonii DPC 6026]
          Length = 369

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 222 IVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I  +G +N GKS+L NA+       KDV   +  PGTT D + I L    YL+   DT G
Sbjct: 169 IYFVGTTNVGKSTLINAIINMNSDLKDVITTSKFPGTTLDEIKIPLSNGHYLI---DTPG 225

Query: 277 IRETDDIV 284
           I   + + 
Sbjct: 226 ILNANQLA 233


>gi|261752416|ref|ZP_05996125.1| GTP binding protein HflX [Brucella suis bv. 5 str. 513]
 gi|261742169|gb|EEY30095.1| GTP binding protein HflX [Brucella suis bv. 5 str. 513]
          Length = 346

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 30/171 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 109 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLRRIRLPHGETVILSDTVGFISN 167

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  ADLIL +++I+     +  ++++ I   +G +   ++   E 
Sbjct: 168 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 227

Query: 339 YDHL--------------------------ISSFTGEGLEELINKIKSILS 363
           ++ +                          +S+ TGEG++ L++ I++ ++
Sbjct: 228 WNKIDNLDESAREAALRLAAAGSEEGRPIPVSAITGEGVDRLLSLIETRIA 278


>gi|229043800|ref|ZP_04191498.1| GTPase [Bacillus cereus AH676]
 gi|228725500|gb|EEL76759.1| GTPase [Bacillus cereus AH676]
          Length = 349

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 14/101 (13%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRD 256
           HI    L + + +G  I ++G S  GKS+L NAL   +VA   DI           T R+
Sbjct: 180 HIGIDSLKQFVSSGKTIALVGSSGVGKSTLLNALIGIEVAKTGDIREEDSRGRHTTTHRE 239

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +  +     G LV   DT G+RE       E I+ TF ++E
Sbjct: 240 LFQLP---SGALV--IDTPGMRELQLWEGSEAIQTTFSDIE 275


>gi|160886325|ref|ZP_02067328.1| hypothetical protein BACOVA_04334 [Bacteroides ovatus ATCC 8483]
 gi|156108210|gb|EDO09955.1| hypothetical protein BACOVA_04334 [Bacteroides ovatus ATCC 8483]
          Length = 828

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 181 EEDVQNFSSKEV----LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           EE+ +  + K V    L + L +K +    ++ GK     R    + ++G+ N+GK+SLF
Sbjct: 74  EEEAKKLAEKTVYHEGLPEDLSVKEEDMKRLALGK-----RRTINVALVGNPNSGKTSLF 128

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N LA      V +  G T D      D EGY  +I D  G         +E   R  +  
Sbjct: 129 N-LASGAHEHVGNYSGVTVDAKEGYFDFEGYHFRIVDLPGTYSLSAYTPEEIYVRRHIID 187

Query: 297 ENADLIL 303
           E  D+I+
Sbjct: 188 ETPDVII 194


>gi|120609885|ref|YP_969563.1| GTP-binding protein Era [Acidovorax citrulli AAC00-1]
 gi|120588349|gb|ABM31789.1| GTP-binding protein Era [Acidovorax citrulli AAC00-1]
          Length = 344

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    +        DT G +   
Sbjct: 54  IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTMGAAQFVFVDTPGFQTKH 113

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKEINS 310
                + + +T +  + + DLIL + E  S
Sbjct: 114 STALNKSLNKTVMGAIGDVDLILFVVEAGS 143


>gi|72383397|ref|YP_292752.1| ribosomal biogenesis GTPase [Prochlorococcus marinus str. NATL2A]
 gi|72003247|gb|AAZ59049.1| Ras superfamily GTP-binding protein YlqF [Prochlorococcus marinus
           str. NATL2A]
          Length = 287

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 205 SHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI--- 260
             ++Q +L   ++N   +++ LG  N GKS+L N L KK V   +  PG TR +  +   
Sbjct: 108 QELNQRRLDRGMKNRAIRVLTLGFPNVGKSALINRLVKKKVVSSSRKPGVTRSLRWVRLG 167

Query: 261 -DLDL 264
            DLDL
Sbjct: 168 QDLDL 172


>gi|86151835|ref|ZP_01070049.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86153468|ref|ZP_01071672.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121613147|ref|YP_001000361.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 81-176]
 gi|189037258|sp|A1VZ20|ERA_CAMJJ RecName: Full=GTPase Era
 gi|85841464|gb|EAQ58712.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85843194|gb|EAQ60405.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249445|gb|EAQ72405.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 291

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           G+ E+   + +  ++     + + D+IL +  +
Sbjct: 60  GLHESGATLNQLLVQSAIKSIGDCDVILFVASV 92


>gi|110639099|ref|YP_679308.1| ribosome biogenesis GTP-binding protein YsxC [Cytophaga
           hutchinsonii ATCC 33406]
 gi|119369188|sp|Q11RJ8|ENGB_CYTH3 RecName: Full=Probable GTP-binding protein EngB
 gi|110281780|gb|ABG59966.1| GTP-binding protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 199

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 11/85 (12%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTR--DVLT 259
           ISS+    K  EI +  Y  +  G SN GKSSL N+L   K++A+ +  PG T+  ++ T
Sbjct: 8   ISSYDDYQKCPEITKPEYAFI--GRSNVGKSSLINSLTGVKNLAMTSSKPGKTQLINLFT 65

Query: 260 ID-----LDLEGY-LVKISDTAGIR 278
           I+      DL GY   K S ++ I+
Sbjct: 66  IEETWILADLPGYGFAKASQSSRIK 90


>gi|238063470|ref|ZP_04608179.1| small GTP-binding protein [Micromonospora sp. ATCC 39149]
 gi|237885281|gb|EEP74109.1| small GTP-binding protein [Micromonospora sp. ATCC 39149]
          Length = 507

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 48/104 (46%), Gaps = 13/104 (12%)

Query: 207 ISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTID 261
           + Q K     RN    V I G++NAGKSSL N L    V    A+   +  TTR     D
Sbjct: 265 VRQTKRARRSRNSVPAVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTTRKATAPD 324

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL 303
               G +  +SDT G +R     IV  E  + T  EV  ADL++
Sbjct: 325 ----GRIYTLSDTVGFVRHLPHQIV--EAFRSTLEEVAEADLVV 362


>gi|227889535|ref|ZP_04007340.1| GTP-binding protein [Lactobacillus johnsonii ATCC 33200]
 gi|227850013|gb|EEJ60099.1| GTP-binding protein [Lactobacillus johnsonii ATCC 33200]
          Length = 369

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 222 IVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I  +G +N GKS+L NA+       KDV   +  PGTT D + I L    YL+   DT G
Sbjct: 169 IYFVGTTNVGKSTLINAIINMNSDLKDVITTSKFPGTTLDEIKIPLSNGHYLI---DTPG 225

Query: 277 IRETDDIV 284
           I   + + 
Sbjct: 226 ILNANQLA 233


>gi|209548602|ref|YP_002280519.1| GTP-binding protein Era [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534358|gb|ACI54293.1| GTP-binding protein Era [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 313

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 24  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++  +   +    +ADLI+LL
Sbjct: 84  RRLDRAMVTSAWGGARDADLIVLL 107


>gi|172056802|ref|YP_001813262.1| GTP-binding protein YqeH [Exiguobacterium sibiricum 255-15]
 gi|171989323|gb|ACB60245.1| Nitric-oxide synthase [Exiguobacterium sibiricum 255-15]
          Length = 374

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 16/101 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKK------DVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           R G  + ++G +N GKS+L N + K+       V  V+  PGTT D++ I LD       
Sbjct: 163 RKGRDVYVVGCTNVGKSTLINQVIKRFGEEEEAVITVSHFPGTTLDLIDIPLD------- 215

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
             D   + +T  I+    +   +++  +  LI   KEI  +
Sbjct: 216 --DNCNLYDTPGIINHHQMAH-YVDARDLKLITPKKEIKPQ 253


>gi|332879047|ref|ZP_08446756.1| ribosome biogenesis GTPase Era [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332682996|gb|EGJ55884.1| ribosome biogenesis GTPase Era [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   L+ E   +  SDT G+ + +  
Sbjct: 10  IVGNPNVGKSTLMNLLVGERISIATFKAQTTRHRIMGILNTEDMQICFSDTPGVLKPNYK 69

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
           +++  +  +   +++AD++L + ++    +    KN DF+   +K D+
Sbjct: 70  LQESMLNFSESALQDADVLLYVTDMVETPD----KNGDFLEKVSKMDV 113


>gi|227524677|ref|ZP_03954726.1| GTP-binding protein [Lactobacillus hilgardii ATCC 8290]
 gi|227088161|gb|EEI23473.1| GTP-binding protein [Lactobacillus hilgardii ATCC 8290]
          Length = 378

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI-----VTDIPGTTRDVLTIDLDLEGYL 268
           E  R+G  + ++G +N GKS+L NA+ ++   I      +  PGTT D + I L+ +G+ 
Sbjct: 167 EKYRDGKDVYVVGVTNVGKSTLINAVIRQSTGIKELITTSRFPGTTLDRIDIPLN-DGH- 224

Query: 269 VKISDTAGI 277
             I DT GI
Sbjct: 225 -SIVDTPGI 232


>gi|227513534|ref|ZP_03943583.1| GTP-binding protein [Lactobacillus buchneri ATCC 11577]
 gi|227083407|gb|EEI18719.1| GTP-binding protein [Lactobacillus buchneri ATCC 11577]
          Length = 378

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI-----VTDIPGTTRDVLTIDLDLEGYL 268
           E  R+G  + ++G +N GKS+L NA+ ++   I      +  PGTT D + I L+ +G+ 
Sbjct: 167 EKYRDGKDVYVVGVTNVGKSTLINAVIRQSTGIKELITTSRFPGTTLDRIDIPLN-DGH- 224

Query: 269 VKISDTAGI 277
             I DT GI
Sbjct: 225 -SIVDTPGI 232


>gi|332296610|ref|YP_004438533.1| ferrous iron transport protein B [Thermodesulfobium narugense DSM
           14796]
 gi|332179713|gb|AEE15402.1| ferrous iron transport protein B [Thermodesulfobium narugense DSM
           14796]
          Length = 720

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+  +G+ N GKS+L NAL+  ++  V + PG T +    ++ +   +  + D  G    
Sbjct: 20  KVAFVGNPNVGKSALINALSGSNLK-VGNWPGVTVEKKEANIIINNQMFSLVDLPGAYSL 78

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           +    +E I R FL  E  D+I+
Sbjct: 79  NPFSLEEKITRDFLIKERPDVIV 101


>gi|302751066|gb|ADL65243.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
           str. JKD6008]
          Length = 285

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAK+ +A   + PG T+    I +   G  +++ DT GI
Sbjct: 113 RAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKV---GNALQLLDTPGI 166


>gi|297617099|ref|YP_003702258.1| ribosome biogenesis GTP-binding protein YlqF [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144936|gb|ADI01693.1| ribosome biogenesis GTP-binding protein YlqF [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 286

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I+I G  N GKSS  N+LA K V     +PG TR    I +  EG  +++ DT G+   
Sbjct: 122 RIMIAGLPNVGKSSFLNSLAGKRVVKTGAVPGVTRGRQWIRIK-EG--IELLDTPGVMWP 178

Query: 281 DDIVEKEGIKRTFLEV 296
               +++G K   L V
Sbjct: 179 KVENDEQGTKLALLAV 194


>gi|283956075|ref|ZP_06373562.1| GTP-binding protein ERA-like protein [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792395|gb|EFC31177.1| GTP-binding protein ERA-like protein [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 291

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           G+ E+   + +  ++     + + D+IL +  +
Sbjct: 60  GLHESGARLNQLLVQSAIKSMRDCDMILFVASV 92


>gi|227510525|ref|ZP_03940574.1| GTP-binding protein [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190177|gb|EEI70244.1| GTP-binding protein [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 378

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI-----VTDIPGTTRDVLTIDLDLEGYL 268
           E  R+G  + ++G +N GKS+L NA+ ++   I      +  PGTT D + I L+ +G+ 
Sbjct: 167 EKYRDGKDVYVVGVTNVGKSTLINAVIRQSTGIKELITTSRFPGTTLDRIDIPLN-DGH- 224

Query: 269 VKISDTAGI 277
             I DT GI
Sbjct: 225 -SIVDTPGI 232


>gi|297584020|ref|YP_003699800.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
           selenitireducens MLS10]
 gi|297142477|gb|ADH99234.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
           selenitireducens MLS10]
          Length = 285

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  NAGKS++ N LA K +  + D PG T+    I +D +   + + DT GI
Sbjct: 122 RALIIGIPNAGKSTVINRLAGKRITKIGDKPGVTKAQQWIKVDRQ---LDLLDTPGI 175


>gi|149637336|ref|XP_001510383.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 826

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + ++G  N GKSSL N+L +     V   PG T+ +  + LD     +K+ D  
Sbjct: 508 IKTAITVGVVGFPNVGKSSLINSLKRARACSVGATPGVTKCLQEVHLDKH---IKLLDCP 564

Query: 276 GIRETDDIVEKEGIKRTFLEVEN 298
           GI  T    +   I R  +++E 
Sbjct: 565 GIVMTTSTSDAAMILRNCIKIEQ 587


>gi|148259271|ref|YP_001233398.1| GTP-binding protein Era [Acidiphilium cryptum JF-5]
 gi|146400952|gb|ABQ29479.1| tRNA modification GTPase trmE [Acidiphilium cryptum JF-5]
          Length = 295

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R GY + +LG  NAGKS+L N      V+IVT    TTR  ++  +   G  + + DT G
Sbjct: 4   RCGY-VALLGRPNAGKSTLLNQAIGAKVSIVTPKAQTTRFRISGIVMRGGDQIVLVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I      +++  +   +  V  ADL  L+
Sbjct: 63  IFAPKRRLDRAMVAAAWEGVAGADLACLI 91


>gi|118475630|ref|YP_892169.1| GTP-binding protein Era [Campylobacter fetus subsp. fetus 82-40]
 gi|189037254|sp|A0RPN6|ERA_CAMFF RecName: Full=GTPase Era
 gi|118414856|gb|ABK83276.1| GTP-binding protein Era [Campylobacter fetus subsp. fetus 82-40]
          Length = 289

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 12/123 (9%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR---DVLTIDLDLEGYLVKIS 272
           +++G+ I ++G +NAGKSSL N L  + +++V+     TR   + + +  D +   +   
Sbjct: 1   MKSGF-ISLIGRTNAGKSSLLNYLLNEKISMVSHKQNATRRKINGIVMHKDSQAIFI--- 56

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNIDFIFIGT 327
           DT G+ E++  + K  ++     + + DL+L +  +     N KK ++  K+   +   T
Sbjct: 57  DTPGLHESNKTMNKLMVEAAIKSIGDCDLLLFVASVFDNIENYKKFLNLKKDAPHLIAIT 116

Query: 328 KSD 330
           K D
Sbjct: 117 KID 119


>gi|126436041|ref|YP_001071732.1| GTP-binding protein Era [Mycobacterium sp. JLS]
 gi|189037655|sp|A3Q264|ERA_MYCSJ RecName: Full=GTPase Era
 gi|126235841|gb|ABN99241.1| GTP-binding protein Era [Mycobacterium sp. JLS]
          Length = 299

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    VAI ++ P TTR  +   +  + + + + DT G
Sbjct: 5   RSGF-VCFVGRPNTGKSTLTNALVGTKVAITSNRPQTTRHTIRGIVHRDEFQIILVDTPG 63

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ +   + +K T+ EV+
Sbjct: 64  LHRPRTLLGQRLNDLVKTTYSEVD 87


>gi|260907544|ref|ZP_05915866.1| predicted GTPase [Brevibacterium linens BL2]
          Length = 343

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 10/68 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNAL---AKKDVAIVTDIPG----TTRDVLTIDLDLEGYLVK 270
           +G   V++GHS  GKS+L NAL   A +    V D+ G    T+   + + LD  G+LV 
Sbjct: 210 HGQISVLIGHSGVGKSTLMNALVPRADRATGHVNDVTGRGRHTSSSAICLPLDGGGWLV- 268

Query: 271 ISDTAGIR 278
             DT G+R
Sbjct: 269 --DTPGVR 274


>gi|330957071|gb|EGH57331.1| GTP-binding protein, HSR1-related protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 458

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  LV++ DT G+
Sbjct: 11  KLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVDGQALVELYDTPGL 69

Query: 278 RET 280
            + 
Sbjct: 70  EDA 72


>gi|308177460|ref|YP_003916866.1| GTP-binding protein Era [Arthrobacter arilaitensis Re117]
 gi|307744923|emb|CBT75895.1| GTP-binding protein Era [Arthrobacter arilaitensis Re117]
          Length = 320

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+   + G  NAGKS+L NAL  + VAI +  P TTR  +   +  E   + + D
Sbjct: 15  EGFRSGFTSFV-GRPNAGKSTLTNALVGQKVAITSAKPQTTRHTIRGIVHREDAQLILVD 73

Query: 274 TAGI 277
           T G+
Sbjct: 74  TPGL 77


>gi|297538075|ref|YP_003673844.1| ribosome biogenesis GTP-binding protein YlqF [Methylotenera sp.
           301]
 gi|297257422|gb|ADI29267.1| ribosome biogenesis GTP-binding protein YlqF [Methylotenera sp.
           301]
          Length = 314

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++I+G  N GKS+L NAL  + VA V D P  T+     D+      + I+DT G+
Sbjct: 118 RMMIMGIPNVGKSTLMNALLNRRVAKVGDEPAVTKSQQRFDI---SETMSITDTPGM 171


>gi|268609534|ref|ZP_06143261.1| small GTP-binding protein [Ruminococcus flavefaciens FD-1]
          Length = 415

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 22/174 (12%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI--RE 279
            I+G++N GKS+L NAL    V     +  T  D+ +  ++L +G  V + DT G+  R 
Sbjct: 203 AIVGYTNVGKSTLLNALTDAGVLAENKLFATL-DITSRSIELPDGRSVMLIDTVGLIRRL 261

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLK-----EINSKKEISFP-------KNIDFIFIGT 327
             ++V  E  K T  E   AD+IL ++     EI  + E++           I  IF+  
Sbjct: 262 PHNLV--EAFKSTLEEAAAADIILNVQDLTSPEIKEQAEVTAHLLSELGCDGIPQIFVMN 319

Query: 328 KSDLY----STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           K+D      + + +    LIS+    G + L+  I   L    K++   IP  K
Sbjct: 320 KADAAPFTDTVFEDGNTVLISAKEQTGFDRLLECIVRNLPETAKRMKLLIPYDK 373


>gi|302557536|ref|ZP_07309878.1| ribosome small subunit-dependent GTPase A [Streptomyces
           griseoflavus Tu4000]
 gi|302475154|gb|EFL38247.1| ribosome small subunit-dependent GTPase A [Streptomyces
           griseoflavus Tu4000]
          Length = 363

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIV---TDIPGTTRDVLTID--LDLEGYLVK 270
           I  G   V+LG S AGKS+L NAL  +DV  V    D+ G  R   T    L L G  V 
Sbjct: 195 ITAGGTSVLLGQSGAGKSTLANALLGEDVMDVRATRDVDGKGRHTTTTRNLLALPGGGVL 254

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVE 297
           I DT G+R         G+ + F E+E
Sbjct: 255 I-DTPGLRGVGLWDAGTGVGQVFAEIE 280


>gi|255535475|ref|YP_003095846.1| GTP-binding protein Era [Flavobacteriaceae bacterium 3519-10]
 gi|255341671|gb|ACU07784.1| GTP-binding protein Era [Flavobacteriaceae bacterium 3519-10]
          Length = 291

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKS+L N L  + +AIVT    TTR  +    + E   +  SDT G+ +    
Sbjct: 9   IVGKPNVGKSTLLNQLMGEKLAIVTQKAQTTRHRIFGIYNEEDLQIVFSDTPGVLDP--- 65

Query: 284 VEKEGIKRTFLE-----VENADLILLLKEINSKKE 313
             K G++   ++     +++AD+ L + +I  K E
Sbjct: 66  --KYGLQERMMDFVKDSLQDADVFLFIVDILDKSE 98


>gi|229031329|ref|ZP_04187334.1| hypothetical protein bcere0028_33820 [Bacillus cereus AH1271]
 gi|228729984|gb|EEL80959.1| hypothetical protein bcere0028_33820 [Bacillus cereus AH1271]
          Length = 424

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|241203890|ref|YP_002974986.1| GTP-binding protein Era [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857780|gb|ACS55447.1| GTP-binding protein Era [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 313

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 24  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++  +   +    +ADLI+LL
Sbjct: 84  RRLDRAMVTSAWGGARDADLIVLL 107


>gi|83630757|gb|ABC26876.1| putative nuclear GTPase [Solanum lycopersicum]
          Length = 609

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I  LKN   SH         I+    + ++G  N GKSSL N+L +  V  V   PG TR
Sbjct: 254 IKLLKNYSRSHE--------IKKSITVGVIGLPNVGKSSLINSLKRSHVVNVGATPGLTR 305

Query: 256 DVLTIDLDLEGYLVKISDTAGI 277
            +  + LD     VK+ D  G+
Sbjct: 306 SLQEVQLDKN---VKLLDCPGV 324


>gi|108800418|ref|YP_640615.1| GTP-binding protein Era [Mycobacterium sp. MCS]
 gi|119869547|ref|YP_939499.1| GTP-binding protein Era [Mycobacterium sp. KMS]
 gi|122976748|sp|Q1B6C5|ERA_MYCSS RecName: Full=GTPase Era
 gi|189037656|sp|A1UIQ1|ERA_MYCSK RecName: Full=GTPase Era
 gi|108770837|gb|ABG09559.1| GTP-binding protein Era [Mycobacterium sp. MCS]
 gi|119695636|gb|ABL92709.1| GTP-binding protein Era [Mycobacterium sp. KMS]
          Length = 299

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    VAI ++ P TTR  +   +  + + + + DT G
Sbjct: 5   RSGF-VCFVGRPNTGKSTLTNALVGTKVAITSNRPQTTRHTIRGIVHRDEFQIILVDTPG 63

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ +   + +K T+ EV+
Sbjct: 64  LHRPRTLLGQRLNDLVKTTYSEVD 87


>gi|85014445|ref|XP_955718.1| GTP-binding protein [Encephalitozoon cuniculi GB-M1]
 gi|19171412|emb|CAD27137.1| similarity to HYPOTHETICAL GTP-BINDING PROTEIN YN8U_yeast
           [Encephalitozoon cuniculi GB-M1]
          Length = 418

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 31/66 (46%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N GKSS+ N L  K+V  V  IPG T+    I L    YL+       I   D  V
Sbjct: 269 VGYPNTGKSSIINTLRNKEVCKVAPIPGETKVWQYITLTRGIYLIDCPGIVPISNYDQAV 328

Query: 285 EKEGIK 290
            +  ++
Sbjct: 329 LRGAVR 334


>gi|304310580|ref|YP_003810178.1| Small GTP-binding protein Era [gamma proteobacterium HdN1]
 gi|301796313|emb|CBL44521.1| Small GTP-binding protein Era [gamma proteobacterium HdN1]
          Length = 305

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275
           R G+ I I+G  N GKS+L N +  + ++I +  P TTR  +L I  D     + + DT 
Sbjct: 13  RCGF-IAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRILGIKTDGPVQAIYV-DTP 70

Query: 276 GIRETDDIVEKEGIKRTFLE-VENADLILLL 305
           GI    +      + R+ LE V++ DL+L +
Sbjct: 71  GIHRGGEKALNRFMNRSALESVKDVDLVLFV 101


>gi|294629274|ref|ZP_06707834.1| GTP-binding protein Era [Streptomyces sp. e14]
 gi|292832607|gb|EFF90956.1| GTP-binding protein Era [Streptomyces sp. e14]
          Length = 320

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 15/134 (11%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G+++        +G  NAGKS+L NAL  + VAI ++ P TTR  +   +      + + 
Sbjct: 15  GDMVHRAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPDAQLILV 74

Query: 273 DTAGIRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK---------KEISFPKNI 320
           DT G+ +   ++ +   + ++ T+ EV   D+I      + K         KE++  K  
Sbjct: 75  DTPGLHKPRTLLGERLNDVVRATWAEV---DVIGFCLPADQKIGPGDRFIAKELAGIKRT 131

Query: 321 DFIFIGTKSDLYST 334
             + I TK+DL  +
Sbjct: 132 PKVAIVTKTDLVDS 145


>gi|289168307|ref|YP_003446576.1| hypothetical protein smi_1474 [Streptococcus mitis B6]
 gi|288907874|emb|CBJ22714.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 412

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K +    D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNTLTSK-IQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPRLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E L    + KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVQDFTPTQTPYALISAKSEDSRENLQALFLEKIKDIFEVFTLRVPFS-KSYKIH 375


>gi|290989976|ref|XP_002677613.1| predicted protein [Naegleria gruberi]
 gi|284091221|gb|EFC44869.1| predicted protein [Naegleria gruberi]
          Length = 654

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           +LG+ N GKSS+ N L KK V     IPG T+    + L    +L+   D  G+  T D 
Sbjct: 369 LLGYPNVGKSSVINTLRKKKVCKAAPIPGETKVWQYVALMRRIFLI---DCPGVVHTTDG 425

Query: 284 V 284
           V
Sbjct: 426 V 426


>gi|115397817|ref|XP_001214500.1| nucleolar GTP-binding protein 2 [Aspergillus terreus NIH2624]
 gi|114192691|gb|EAU34391.1| nucleolar GTP-binding protein 2 [Aspergillus terreus NIH2624]
          Length = 578

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 9/101 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 348 RKQISVGFIGYPNTGKSSIINTLRKKKVCNVAPIPGETKVWQYITLMKRIYLI---DCPG 404

Query: 277 IRETDDIVEKEGI-KRTFLEVENAD-----LILLLKEINSK 311
           +   +     E I  R  + +EN D     +  +LK +  K
Sbjct: 405 VVPPNQNDTPEDILLRGVVRIENVDNPEQYIPAVLKRVQPK 445


>gi|14521819|ref|NP_127295.1| GTP-binding protein Era related [Pyrococcus abyssi GE5]
 gi|5459039|emb|CAB50525.1| Hypothetical protein, possibly GTP-binding [Pyrococcus abyssi GE5]
          Length = 186

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           K+ I+G  N GKS+L NAL    V+ V++ PGTT+  +
Sbjct: 3   KVAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTI 40


>gi|126462218|ref|YP_001043332.1| small GTP-binding protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103882|gb|ABN76560.1| small GTP-binding protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 447

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 29/165 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +   DV +  D+   T D     + L  G  V +SDT G    
Sbjct: 229 VALVGYTNAGKSTLFNRMTGADV-LAKDMLFATLDPTMRGVTLPSGRKVILSDTVGF--I 285

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEI----------------------NSKKEISF 316
            D+  +     + T  EV  ADLIL +++I                       +  ++  
Sbjct: 286 SDLPTQLVAAFRATLEEVLEADLILHVRDIAHPETAEQAADVAEILQSLGVKGATPQVEV 345

Query: 317 PKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIKS 360
              +D +       L +   + E    +S+ TGEGL +L+  + +
Sbjct: 346 WNKLDLVEGAAHEQLLAQAAKSETIFALSALTGEGLPDLLEAVSA 390


>gi|229104263|ref|ZP_04234934.1| hypothetical protein bcere0019_34110 [Bacillus cereus Rock3-28]
 gi|228679159|gb|EEL33365.1| hypothetical protein bcere0019_34110 [Bacillus cereus Rock3-28]
          Length = 424

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|229104400|ref|ZP_04235069.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-28]
 gi|228679098|gb|EEL33306.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-28]
          Length = 296

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +   G  +++ DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKV---GKEMELLDTPGI 175


>gi|229162638|ref|ZP_04290598.1| hypothetical protein bcere0009_34100 [Bacillus cereus R309803]
 gi|228620901|gb|EEK77767.1| hypothetical protein bcere0009_34100 [Bacillus cereus R309803]
          Length = 424

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|224373216|ref|YP_002607588.1| GTP-binding protein [Nautilia profundicola AmH]
 gi|223588958|gb|ACM92694.1| GTP-binding protein [Nautilia profundicola AmH]
          Length = 189

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           N  ++ +LG SN GKSS  NA   + +A  +  PG TR +   +++ +G    + D  G
Sbjct: 19  NFTEVALLGRSNVGKSSFLNAFTNQKIAKTSQTPGKTRLINFFEVEDDGKKYVLVDLPG 77


>gi|218232256|ref|YP_002368510.1| GTP-binding protein [Bacillus cereus B4264]
 gi|218160213|gb|ACK60205.1| GTP-binding protein [Bacillus cereus B4264]
          Length = 425

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 198 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 256

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 257 QDLPTSLIAAFRSTLEEAGEADVIL 281


>gi|169840757|ref|ZP_02873870.1| tRNA modification GTPase TrmE [candidate division TM7 single-cell
           isolate TM7a]
          Length = 37

 Score = 38.5 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 23/28 (82%)

Query: 113 FSRRAFENGKIDLLEAESLADLISSETE 140
           F++RAF NG+IDL +AE++ D+I  +TE
Sbjct: 1   FTKRAFMNGRIDLSQAEAVMDIIQGKTE 28


>gi|160915890|ref|ZP_02078098.1| hypothetical protein EUBDOL_01913 [Eubacterium dolichum DSM 3991]
 gi|158432366|gb|EDP10655.1| hypothetical protein EUBDOL_01913 [Eubacterium dolichum DSM 3991]
          Length = 692

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y I  +G+ N GKS+  NALAK D   V +  G T +     +        + D  G   
Sbjct: 3   YTIAFVGNPNVGKSAWINALAKADFK-VGNWAGVTVEKKEAHVVWGNETYHLIDLPGTHS 61

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
            ++ V +EGI  ++L     DL++
Sbjct: 62  LEEGVNEEGITGSYLRQNKVDLLV 85


>gi|92117773|ref|YP_577502.1| GTP-binding protein Era [Nitrobacter hamburgensis X14]
 gi|91800667|gb|ABE63042.1| GTP-binding protein Era [Nitrobacter hamburgensis X14]
          Length = 305

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 42/210 (20%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +      + + DT G
Sbjct: 11  RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVVENNAQIILVDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------------ISFPK-----N 319
           I      +++  +   +    +ADL+  L +  +  +            ++ PK      
Sbjct: 70  IFAPKRRLDRAMVSTAWSGAHDADLVCALLDARAGVDDEADVILTKLAGVAHPKILVLNK 129

Query: 320 IDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           ID +     +   S        E   ++S+ +G+G+++L    +  L+ +  + PF  P 
Sbjct: 130 IDLVPREKLLALASAANGRMAFEDTFMVSALSGDGVDDL----RRALAERVPEGPFHYPE 185

Query: 376 HK------RHL----------YHLSQTVRY 389
            +      RHL           HL Q + Y
Sbjct: 186 DQMSDAPLRHLAAEITREKIYRHLHQELPY 215


>gi|116629568|ref|YP_814740.1| GTPase [Lactobacillus gasseri ATCC 33323]
 gi|238853073|ref|ZP_04643465.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
           202-4]
 gi|282852053|ref|ZP_06261411.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
           224-1]
 gi|311110788|ref|ZP_07712185.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
           MV-22]
 gi|116095150|gb|ABJ60302.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus gasseri
           ATCC 33323]
 gi|238834321|gb|EEQ26566.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
           202-4]
 gi|282556813|gb|EFB62417.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
           224-1]
 gi|311065942|gb|EFQ46282.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
           MV-22]
          Length = 279

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 7/71 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           I++G    +IR    + I G  N GKS++ N +  ++ AIV D PG TR    +      
Sbjct: 113 IAKGASNPMIR----VAIAGIPNCGKSTIINRMVGRNAAIVGDKPGVTRGQSWLKTKTN- 167

Query: 267 YLVKISDTAGI 277
             V+I DT GI
Sbjct: 168 --VQILDTPGI 176


>gi|330501085|ref|YP_004377954.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas mendocina
           NK-01]
 gi|328915371|gb|AEB56202.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas mendocina
           NK-01]
          Length = 216

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           N I+ L    S  IS  K+ +   + G ++   G SNAGKSS  N L    +A  +  PG
Sbjct: 5   NPIIGLCQQASFLISAAKVDQCPEDSGLEVAFAGRSNAGKSSALNTLTHASLARTSKTPG 64

Query: 253 TTRDVLTIDLDLEGYLVKI 271
            T+ +    LD E  LV +
Sbjct: 65  RTQLLNFFRLDDERRLVDL 83


>gi|326384487|ref|ZP_08206167.1| GTP-binding proten HflX [Gordonia neofelifaecis NRRL B-59395]
 gi|326196832|gb|EGD54026.1| GTP-binding proten HflX [Gordonia neofelifaecis NRRL B-59395]
          Length = 499

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 33/181 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKSSL NA+    V +V D    T D  T    L +G+ V  +DT G    
Sbjct: 277 LTVVGYTNAGKSSLVNAMTGSGV-LVQDALFATLDPTTRRAQLADGHEVVFTDTVGFVRH 335

Query: 281 DDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFP---- 317
                 E  + T  E  +ADL++                   +L ++ ++++   P    
Sbjct: 336 LPTQLVEAFRSTLEEAVDADLLVHVVDGADPFPANQISAVRQVLGDVLAEEKRPAPPEML 395

Query: 318 --KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS----NKFKKLPF 371
               ID +   T + L   Y +     +S+ TGEGL+ L   I   L     +   ++PF
Sbjct: 396 VINKIDAVDGLTMTALRGEYPDA--QFVSARTGEGLDGLFAAITEFLQRDDVDAVLQVPF 453

Query: 372 S 372
           S
Sbjct: 454 S 454


>gi|315925484|ref|ZP_07921695.1| GTP-binding protein [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621385|gb|EFV01355.1| GTP-binding protein [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 438

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 88/211 (41%), Gaps = 31/211 (14%)

Query: 217 RNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           R+G + V ++G++NAGKS+LFN L    V    D P  T D  T  ++ E     +SDT 
Sbjct: 199 RSGVRAVSLVGYTNAGKSTLFNRLTSAAVH-TRDAPFVTLDTTTRRINPEYGHCLLSDTV 257

Query: 276 G---------IRETDDIVEKEGIKRTFLEV---------ENADLI-LLLKEINSKKEISF 316
           G         IR     +         L V         EN  ++  +LKEI +   I  
Sbjct: 258 GFIDKLPHELIRAFRATLAAAADADLLLHVVDASDSRAAENIAVVERVLKEIGA---IHL 314

Query: 317 PK-----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           P+      ID +    ++ + +         IS+ TGEGL  L   +   LS + +   +
Sbjct: 315 PRLLVYNKIDRLPPDARTAVMARCARADTFAISAKTGEGLGPLAAAVIETLSAQDRIRSY 374

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
            +P   R    L Q  R+ E+ S  ++  G+
Sbjct: 375 LLPY--RDGKRLEQLYRHAEILSREDRPEGI 403


>gi|304559922|gb|ADM42586.1| NgrB [Edwardsiella tarda FL6-60]
          Length = 291

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + AGKSSL NAL + +V  ++++   TR+ L   L    + + + D  G+ E++
Sbjct: 39  IGIMGKTGAGKSSLCNALFQGEVTPISNVEACTREALHFRLRNGNHSLMVVDLPGVGESE 98

Query: 282 D 282
            
Sbjct: 99  Q 99


>gi|258423916|ref|ZP_05686801.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           A9635]
 gi|257845945|gb|EEV69974.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
           A9635]
          Length = 294

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAK+ +A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKV---GNALQLLDTPGI 175


>gi|261855985|ref|YP_003263268.1| GTP-binding protein Era [Halothiobacillus neapolitanus c2]
 gi|261836454|gb|ACX96221.1| GTP-binding protein Era [Halothiobacillus neapolitanus c2]
          Length = 308

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ I+G  N GKSSL N L  + ++I    P TTR  +T  L      V   DT GI +
Sbjct: 18  QVAIVGRPNVGKSSLLNRLVGQKISITAPKPQTTRHRITGILSEPRGQVVFVDTPGIHQ 76


>gi|121593588|ref|YP_985484.1| small GTP-binding protein [Acidovorax sp. JS42]
 gi|120605668|gb|ABM41408.1| GTP-binding protein HflX [Acidovorax sp. JS42]
          Length = 392

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTA 275
           + + I ++G++NAGKS+LFNAL K   A   D    T D  T  L L      V +SDT 
Sbjct: 200 DTFNISLVGYTNAGKSTLFNALVKAR-AYAADQLFATLDTTTRHLYLGEAAGSVSLSDTV 258

Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320
           G IR+    +  +  + T  E  +ADL+L    +      +FP+ I
Sbjct: 259 GFIRDLPHGL-VDAFQATLQEAVDADLLL---HVVDAANPAFPEQI 300


>gi|49899185|gb|AAH75770.1| Arl3l1 protein [Danio rerio]
          Length = 187

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 45/178 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV+LG  NAGK++L   LA +DV  +T   G     +T D    G  + + D  G R+ 
Sbjct: 24  RIVLLGLDNAGKTTLLKQLASEDVNTITPTQGFNIKSVTCD----GMKLNVWDIGGQRKI 79

Query: 281 DDIVEKEGIKRTFLE--VENADLILLLKEINSKKEISFP-------------KNIDFIFI 325
                     R F +  +EN DL++ + +   KK                  K +  +  
Sbjct: 80  ----------RPFWKKYLENTDLLIYVIDSADKKRFEETGLELSELIDEENLKGVPLLIF 129

Query: 326 GTKSD---------------LYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
             K D               L++    E+     S+ +GEG+++ +N I + + NK K
Sbjct: 130 ANKQDLATASPASEIAEGLNLHAYRDREWQIQACSAVSGEGVQDGMNWISNNIVNKKK 187


>gi|57237466|ref|YP_178479.1| GTP-binding protein [Campylobacter jejuni RM1221]
 gi|57166270|gb|AAW35049.1| GTP-binding protein [Campylobacter jejuni RM1221]
 gi|315057834|gb|ADT72163.1| Putative ATP /GTP binding protein [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 728

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           + I I G  NAGKSSL NAL K+D   V++IP T 
Sbjct: 163 FNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETA 197


>gi|60683298|ref|YP_213442.1| putative iron transport, fusion membrane protein [Bacteroides
           fragilis NCTC 9343]
 gi|60494732|emb|CAH09534.1| putative iron transport, fusion membrane protein [Bacteroides
           fragilis NCTC 9343]
          Length = 822

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E    Q+     ++ + +  +N +++ +++GK     R    + ++G+ N GK+SLFN 
Sbjct: 75  QETRTTQDSYYGPIIEETMIPENKMAT-LAKGK-----RRTINVALIGNPNCGKTSLFNY 128

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            +     I  +  G T D      D +GY  +I D  G         +E   R ++  E 
Sbjct: 129 ASGAHERI-GNYSGVTVDAKENAFDFQGYHFRIVDLPGTYSLSTYTPEEVYVRKYIIEET 187

Query: 299 ADLIL 303
            D+I+
Sbjct: 188 PDVII 192


>gi|319901061|ref|YP_004160789.1| GTP-binding proten HflX [Bacteroides helcogenes P 36-108]
 gi|319416092|gb|ADV43203.1| GTP-binding proten HflX [Bacteroides helcogenes P 36-108]
          Length = 418

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 22/129 (17%)

Query: 192 VLNDILFLKN-----DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-- 244
           +LN +  LK      D      +   G +IR    + ++G++N GKS+L N LAK +V  
Sbjct: 187 ILNRMSLLKERLAEIDRQKSTQRKNRGRMIR----VALVGYTNVGKSTLMNLLAKSEVFA 242

Query: 245 --AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300
              +   +  T R V+     +E     +SDT G IR+   D+V  +  K T  EV  AD
Sbjct: 243 ENKLFATLDTTVRKVI-----IENLPFLLSDTVGFIRKLPTDLV--DSFKSTLDEVREAD 295

Query: 301 LILLLKEIN 309
           L+L + +I+
Sbjct: 296 LLLHIVDIS 304


>gi|313678275|ref|YP_004056015.1| ribosome biogenesis GTP-binding protein YsxC [Mycoplasma bovis
           PG45]
 gi|312950660|gb|ADR25255.1| ribosome biogenesis GTP-binding protein YsxC [Mycoplasma bovis
           PG45]
          Length = 193

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--------DVLTIDLDLEGY 267
           +I   G SN GKSSL NAL  + ++ V+  PG T+        D   +DL   GY
Sbjct: 22  QICFWGRSNVGKSSLLNALVNQKISYVSKQPGRTQFINYFQEEDRFIVDLPGYGY 76


>gi|307708425|ref|ZP_07644891.1| GTP-binding proten HflX [Streptococcus mitis NCTC 12261]
 gi|307615524|gb|EFN94731.1| GTP-binding proten HflX [Streptococcus mitis NCTC 12261]
          Length = 412

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNTLTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDTSNPYHEEHEKTVLSIMKDLDMEDIPRLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E L    + KIK I  +   ++PFS  S+K H
Sbjct: 318 NKADLVEDFTPTQTPYTLISAKSEDSRENLQTLFLEKIKDIFESFTLRVPFS-KSYKIH 375


>gi|226953962|ref|ZP_03824426.1| GTP-binding protein [Acinetobacter sp. ATCC 27244]
 gi|226835316|gb|EEH67699.1| GTP-binding protein [Acinetobacter sp. ATCC 27244]
          Length = 445

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 36/232 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           I ++G++NAGKS+LFN LAK DV     +  T    L  ++ D  G +V ++DT G +R 
Sbjct: 202 ISLVGYTNAGKSTLFNILAKSDVYAADQLFATLDPTLRRLEWDGIGTVV-LADTVGFVRN 260

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKN 319
              D+V  E  K T  E   A L+L                   +LKEI +   I    N
Sbjct: 261 LQHDLV--ESFKATLEETLEATLLLHVVDSSSPNMPEQIEAVESVLKEIGADAPILHVYN 318

Query: 320 -IDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSH 376
            ID    G  + +     E  D + +S+ +G+GL+ L   ++  L  + ++    + P++
Sbjct: 319 KID--LSGDTAKITYKAPELPDRVYLSAHSGQGLDLLSQAVQQCLMGQLQQFDLVLKPAY 376

Query: 377 ---KRHLYHLS--QTVRYLEMASLNEKDCGLDIIAENL-RLASVSLGKITGC 422
              +  LY L+  Q+  Y +   L+   C      E L + A + L +I G 
Sbjct: 377 GKLRTQLYTLNVIQSEHYDDEGDLHLSVCIAPHKLEQLIKQAHLPLDEIVGA 428


>gi|213967787|ref|ZP_03395934.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301382424|ref|ZP_07230842.1| hypothetical protein PsyrptM_07312 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061184|ref|ZP_07252725.1| hypothetical protein PsyrptK_14441 [Pseudomonas syringae pv. tomato
           K40]
 gi|302132023|ref|ZP_07258013.1| hypothetical protein PsyrptN_11564 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927563|gb|EEB61111.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 462

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L   DV+   V+  P TTR V    L + G  LV++ DT G+
Sbjct: 11  KLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVNGQALVELYDTPGL 69


>gi|146305196|ref|YP_001185661.1| GTPase EngB [Pseudomonas mendocina ymp]
 gi|166225970|sp|A4XNL3|ENGB_PSEMY RecName: Full=Probable GTP-binding protein EngB
 gi|145573397|gb|ABP82929.1| cell division checkpoint GTPase YihA [Pseudomonas mendocina ymp]
          Length = 216

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           N I+ L    S  IS  K+ +   + G ++   G SNAGKSS  N L    +A  +  PG
Sbjct: 5   NPIIGLCQQASFLISAAKVDQCPEDSGLEVAFAGRSNAGKSSALNTLTHASLARTSKTPG 64

Query: 253 TTRDVLTIDLDLEGYLVKI 271
            T+ +    LD E  LV +
Sbjct: 65  RTQLLNFFRLDDERRLVDL 83


>gi|48477308|ref|YP_023014.1| GTP binding protein [Picrophilus torridus DSM 9790]
 gi|48429956|gb|AAT42821.1| GTP binding protein [Picrophilus torridus DSM 9790]
          Length = 359

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 102/260 (39%), Gaps = 76/260 (29%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAI-------VTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ N GKSSL N L  K   +       +T +PGT        ++  G  ++I D 
Sbjct: 63  VALVGYPNVGKSSLLNKLTNKKSEVGNFAFTTLTIVPGT--------MNYRGAQIQILDL 114

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------------------KEI 314
            GI +   +    G +     V NADLIL++ +  +K                    K+I
Sbjct: 115 PGIIDNAALGAGRG-REVLAAVRNADLILIVTDPETKGLDRIKSELYKAGIVLNKKRKDI 173

Query: 315 SF------------PKNIDFI----------FIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           SF            P+NID            F      LY     +YD LI  F G    
Sbjct: 174 SFKKSNYGGLRIYKPRNIDLSDDDIRDIAKEFKVVNGTLYIRENIDYDDLIDFFKGN--- 230

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR-YLEMASLNEKDCGLDIIAE---- 407
             I  IK+IL      +   I    R L  +  +   Y+E+++  EK+  ++ + E    
Sbjct: 231 --IVYIKAIL------VINKIDLANRPLDDIEMSFNDYIEVSA--EKNINIEKLKEKIFD 280

Query: 408 NLRLASVSLGKITGCVDVEQ 427
           NL L  + +   +G VD E+
Sbjct: 281 NLDLIRIYMKNKSGEVDYER 300


>gi|68846323|sp|Q8J109|NOG2_CRYNV RecName: Full=Nucleolar GTP-binding protein 2
 gi|56566256|gb|AAN75166.2| NOG2 [Cryptococcus neoformans var. grubii]
          Length = 720

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  GI
Sbjct: 331 VGFIGYPNTGKSSIINTLKKKKVCTVAPIPGETKVWQYITLMRRIYLI---DCPGI 383


>gi|332284647|ref|YP_004416558.1| GTP-binding protein [Pusillimonas sp. T7-7]
 gi|330428600|gb|AEC19934.1| GTP-binding protein [Pusillimonas sp. T7-7]
          Length = 365

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   + ++G++NAGKS+LFNAL +   A   D    T D  T  + +EG   V ISDT G
Sbjct: 188 NTLSVSLVGYTNAGKSTLFNALTRAG-AYAADQLFATLDTTTRRVWIEGAGQVVISDTVG 246

Query: 277 -IRETDDIVEKEGIKRTFLEVENADLIL 303
            IR+    +     + T  E   ADL+L
Sbjct: 247 FIRDLPPTL-IAAFRATLEETVQADLLL 273


>gi|315125374|ref|YP_004067377.1| GTPase EngB [Pseudoalteromonas sp. SM9913]
 gi|315013887|gb|ADT67225.1| GTPase EngB [Pseudoalteromonas sp. SM9913]
          Length = 218

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 9/59 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---------DLEGY 267
            G ++   G SNAGKSS  NAL  + +A  +  PG T+ + T +L         DL GY
Sbjct: 27  TGIEVAFAGRSNAGKSSALNALTDQKLARTSKTPGRTQLINTFELADVDNMRLIDLPGY 85


>gi|294651533|ref|ZP_06728842.1| GTP-binding family protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292822556|gb|EFF81450.1| GTP-binding family protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 445

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 36/232 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           I ++G++NAGKS+LFN LAK DV     +  T    L  ++ D  G +V ++DT G +R 
Sbjct: 202 ISLVGYTNAGKSTLFNILAKSDVYAADQLFATLDPTLRRLEWDGIGTVV-LADTVGFVRN 260

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKN 319
              D+V  E  K T  E   A L+L                   +LKEI +   I    N
Sbjct: 261 LQHDLV--ESFKATLEETLEATLLLHVVDSSSPNMPEQIEAVESVLKEIGADAPILHVYN 318

Query: 320 -IDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSH 376
            ID    G  + +     E  D + +S+ +G+GL+ L   ++  L  + ++    + P++
Sbjct: 319 KID--LSGDTAKITYKAPELPDRVYLSAHSGQGLDLLSQAVQQCLMGQLQQFDLVLKPAY 376

Query: 377 ---KRHLYHLS--QTVRYLEMASLNEKDCGLDIIAENL-RLASVSLGKITGC 422
              +  LY L+  Q+  Y +   L+   C      E L + A + L +I G 
Sbjct: 377 GKLRTQLYTLNVIQSEHYDDEGDLHLSVCITPHKLEQLIKQAHLPLDEIVGA 428


>gi|297526811|ref|YP_003668835.1| small GTP-binding protein [Staphylothermus hellenicus DSM 12710]
 gi|297255727|gb|ADI31936.1| small GTP-binding protein [Staphylothermus hellenicus DSM 12710]
          Length = 696

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 19/153 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKS+LFN L  + V  V + PG T +    +    G  +   D  GI      
Sbjct: 10  VVGQPNVGKSTLFNVLTGRKVH-VANWPGVTVEKHVGERIYRGRRIVFVDLPGIYGFSAT 68

Query: 284 VEKEGIKRTFLEVENADLILLLKE-INSKKEI-----SFPKNIDFIFIGTKSD------L 331
             +E I R ++  +  D++L+L + +N ++ +     +       I + TK D      +
Sbjct: 69  TIEERIARKYILTQQPDVLLVLVDSLNPERTMYLAIQALEITPRVILVFTKVDSVHAHGI 128

Query: 332 YSTYTEEYDHL------ISSFTGEGLEELINKI 358
           +  Y      L      +SS TG G+ EL++ I
Sbjct: 129 HINYYALSSKLGVPVVPVSSATGAGIVELLDTI 161


>gi|269218580|ref|ZP_06162434.1| GTP-binding protein Era [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211691|gb|EEZ78031.1| GTP-binding protein Era [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 296

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL  + VAI +D P TTR V+   ++ E   + + DT G
Sbjct: 9   RAGF-VCVVGRPNTGKSTLTNALVGQKVAITSDRPETTRRVVRAVVNRESGQLILVDTPG 67

Query: 277 I 277
           +
Sbjct: 68  L 68


>gi|262369205|ref|ZP_06062533.1| GTP-binding protein HflX [Acinetobacter johnsonii SH046]
 gi|262315273|gb|EEY96312.1| GTP-binding protein HflX [Acinetobacter johnsonii SH046]
          Length = 443

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN LAK DV     +  T    L  ++ D  G LV ++DT G    
Sbjct: 201 VSLVGYTNAGKSTLFNTLAKSDVYAADQLFATLDPTLRRLEWDGIGPLV-LADTVGFVRN 259

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
                 E  K T  E   A L+L
Sbjct: 260 LAHALVESFKATLEETLEASLLL 282


>gi|228986795|ref|ZP_04146924.1| hypothetical protein bthur0001_34710 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228772967|gb|EEM21404.1| hypothetical protein bthur0001_34710 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 424

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKD-----VAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKS+LFN L + D     +  VT  P T +  L       GY V ++DT
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEADTFEENLLFVTLDPTTRKMPLP-----SGYTVLLTDT 251

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          + T  E   AD+IL
Sbjct: 252 VGFIQDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|227543022|ref|ZP_03973071.1| GTP-binding protein Era [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227181244|gb|EEI62216.1| GTP-binding protein Era [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 308

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI  + P TTR  +   +  +   V + DT G
Sbjct: 16  RSGF-VSFVGRPNTGKSTLTNALVGQKIAITANQPETTRHPIRGIVHRDDAQVIVVDTPG 74

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ +   E +K T+ +V+
Sbjct: 75  LHRPRTLLGERLNEQVKETYADVD 98


>gi|295668330|ref|XP_002794714.1| nucleolar GTP-binding protein [Paracoccidioides brasiliensis Pb01]
 gi|226286130|gb|EEH41696.1| nucleolar GTP-binding protein [Paracoccidioides brasiliensis Pb01]
          Length = 573

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 336 RKQISVGFIGYPNTGKSSIINTLRKKKVCSVAPIPGETKVWQYITLMKRIYLI---DCPG 392

Query: 277 -IRETDDIVEKEGIKRTFLEVENAD 300
            +  + +  E++ + R  + VEN +
Sbjct: 393 VVPPSSNDTEEDILLRGVVRVENVE 417


>gi|254453314|ref|ZP_05066751.1| GTP-binding protein Era [Octadecabacter antarcticus 238]
 gi|198267720|gb|EDY91990.1| GTP-binding protein Era [Octadecabacter antarcticus 238]
          Length = 317

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISD 273
           + R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +  + ++ +  +V + D
Sbjct: 17  VQRAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAIEGDSQIVFV-D 74

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           T G+ +    +++  +   +  V +AD+++L+ E
Sbjct: 75  TPGLFQPKRRLDRAMVAAAWSGVSDADVVVLMIE 108


>gi|38047981|gb|AAR09893.1| similar to Drosophila melanogaster CG3983 [Drosophila yakuba]
          Length = 185

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L +    +V   PG T+ +  ++LD +   +K+ D  
Sbjct: 101 IKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKSMQEVELDSK---IKLIDCP 157

Query: 276 GI 277
           GI
Sbjct: 158 GI 159


>gi|332524018|ref|ZP_08400270.1| ribosome biogenesis GTPase YqeH [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332315282|gb|EGJ28267.1| ribosome biogenesis GTPase YqeH [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 371

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+L NA+       K++   +  PGTT D + I L+   Y   I
Sbjct: 161 RRGRDVYVVGVTNVGKSTLINAIIQEISGNKNIITTSRFPGTTLDKIEIPLEDGTY---I 217

Query: 272 SDTAGI 277
            DT GI
Sbjct: 218 FDTPGI 223


>gi|330997749|ref|ZP_08321588.1| ribosome biogenesis GTPase Era [Paraprevotella xylaniphila YIT
           11841]
 gi|329569848|gb|EGG51606.1| ribosome biogenesis GTPase Era [Paraprevotella xylaniphila YIT
           11841]
          Length = 294

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   L+ E   +  SDT G+ + +  
Sbjct: 10  IVGNPNVGKSTLMNLLVGERISIATFKAQTTRHRIMGILNTEDMQICFSDTPGVLKPNYK 69

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
           +++  +  +   +++AD++L + ++    +    KN DF+   +K D+
Sbjct: 70  LQESMLNFSESALQDADVLLYVTDMVETPD----KNGDFLEKVSKMDV 113


>gi|300361205|ref|ZP_07057382.1| ribosome biogenesis GTPase YqeH [Lactobacillus gasseri JV-V03]
 gi|300353824|gb|EFJ69695.1| ribosome biogenesis GTPase YqeH [Lactobacillus gasseri JV-V03]
          Length = 369

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 222 IVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I  +G +N GKS+L NA+       KDV   +  PGTT D + I L    YL+   DT G
Sbjct: 169 IYFVGTTNVGKSTLINAIINMNSDLKDVITTSKFPGTTLDEIKIPLSNGHYLI---DTPG 225

Query: 277 IRETDDIV 284
           I   + + 
Sbjct: 226 ILNANQLA 233


>gi|229151907|ref|ZP_04280104.1| hypothetical protein bcere0011_34480 [Bacillus cereus m1550]
 gi|228631563|gb|EEK88195.1| hypothetical protein bcere0011_34480 [Bacillus cereus m1550]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|237807624|ref|YP_002892064.1| GTP-binding protein Era [Tolumonas auensis DSM 9187]
 gi|237499885|gb|ACQ92478.1| GTP-binding protein Era [Tolumonas auensis DSM 9187]
          Length = 300

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  + + +D +G Y     DT G+   
Sbjct: 11  VAIVGRPNVGKSTLLNKLLGQKVSITSRKPQTTRHRI-LGIDTQGAYQTIFVDTPGLH-- 67

Query: 281 DDIVEKEGIKR 291
             I EK  I R
Sbjct: 68  --IEEKRAINR 76


>gi|221123945|ref|XP_002162710.1| PREDICTED: similar to guanine nucleotide binding protein-like 2
           (nucleolar), partial [Hydra magnipapillata]
          Length = 347

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N GKSS+ N L KK V     +PG T+    + L    YL+   D  G+    D  
Sbjct: 4   IGYPNVGKSSIINTLKKKKVCKAAPVPGETKVWQYVTLMRRIYLI---DCPGVVYPSDDS 60

Query: 285 EKEGIKRTFLEVEN 298
           E + + +  + VEN
Sbjct: 61  ETDIVLKGVVRVEN 74


>gi|241592750|ref|XP_002404102.1| GTP-binding protein, putative [Ixodes scapularis]
 gi|215500341|gb|EEC09835.1| GTP-binding protein, putative [Ixodes scapularis]
          Length = 455

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 13/93 (13%)

Query: 212 LGEIIRN-GYKIVI----LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           LG   RN G +  I    +G+ N GKSS+ N+L +     V  +PG T+ +  + LD   
Sbjct: 254 LGNYCRNQGIQTCITVGVVGYPNVGKSSIVNSLKRSRACTVGAVPGVTKVMQKVQLDKH- 312

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             V + D+ G+     ++  +G  +  + + NA
Sbjct: 313 --VSLLDSPGV-----VMAAQGASQASVALRNA 338


>gi|77361668|ref|YP_341243.1| GTPase EngB [Pseudoalteromonas haloplanktis TAC125]
 gi|119369234|sp|Q3IJG3|ENGB_PSEHT RecName: Full=Probable GTP-binding protein EngB
 gi|76876579|emb|CAI87801.1| putative GTPase with nucleoside triP hydrolase domain, involved in
           coordination of cell cycle [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 222

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 9/59 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---------DLEGY 267
            G ++   G SNAGKSS  NAL  + +A  +  PG T+ + T +L         DL GY
Sbjct: 27  TGIEVAFAGRSNAGKSSALNALTDQKLARTSKTPGRTQLINTFELADVDDMRLIDLPGY 85


>gi|87125491|ref|ZP_01081336.1| GTP-binding protein ERA-like protein [Synechococcus sp. RS9917]
 gi|86166791|gb|EAQ68053.1| GTP-binding protein ERA-like protein [Synechococcus sp. RS9917]
          Length = 311

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L    VAI + +  TTR+ L   L      + + DT G
Sbjct: 12  RSGF-VALIGRPNVGKSTLVNQLVGDKVAITSPVAQTTRNRLRAILTTPEAQLILVDTPG 70

Query: 277 I 277
           I
Sbjct: 71  I 71


>gi|86149193|ref|ZP_01067425.1| GTP-binding protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86153674|ref|ZP_01071877.1| putative ATPase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88597340|ref|ZP_01100575.1| GTP-binding protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|121612321|ref|YP_001000122.1| GTP-binding protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005080|ref|ZP_02270838.1| GTP-binding protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|218562069|ref|YP_002343848.1| putative ATP/GTP binding protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85840551|gb|EAQ57808.1| GTP-binding protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85842635|gb|EAQ59847.1| putative ATPase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|87250503|gb|EAQ73461.1| GTP-binding protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|88190401|gb|EAQ94375.1| GTP-binding protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359775|emb|CAL34561.1| putative ATP/GTP binding protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|284925682|gb|ADC28034.1| GTP-binding protein [Campylobacter jejuni subsp. jejuni IA3902]
          Length = 728

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           + I I G  NAGKSSL NAL K+D   V++IP T 
Sbjct: 163 FNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETA 197


>gi|328871730|gb|EGG20100.1| guanine nucleotide binding protein 3 [Dictyostelium fasciculatum]
          Length = 607

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I+G+ N GKSSL N+L +     V + PG T+    ++LD     VK+ D+ GI
Sbjct: 262 IIGYPNVGKSSLINSLKRARSVSVANTPGHTKVAQVVNLDKN---VKLIDSPGI 312


>gi|229075612|ref|ZP_04208599.1| hypothetical protein bcere0024_34220 [Bacillus cereus Rock4-18]
 gi|228707591|gb|EEL59777.1| hypothetical protein bcere0024_34220 [Bacillus cereus Rock4-18]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|229111176|ref|ZP_04240732.1| hypothetical protein bcere0018_34230 [Bacillus cereus Rock1-15]
 gi|228672273|gb|EEL27561.1| hypothetical protein bcere0018_34230 [Bacillus cereus Rock1-15]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|229098168|ref|ZP_04229116.1| hypothetical protein bcere0020_34020 [Bacillus cereus Rock3-29]
 gi|229117186|ref|ZP_04246565.1| hypothetical protein bcere0017_34660 [Bacillus cereus Rock1-3]
 gi|228666354|gb|EEL21817.1| hypothetical protein bcere0017_34660 [Bacillus cereus Rock1-3]
 gi|228685359|gb|EEL39289.1| hypothetical protein bcere0020_34020 [Bacillus cereus Rock3-29]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|225619799|ref|YP_002721056.1| ferrous iron transport protein B [Brachyspira hyodysenteriae WA1]
 gi|225214618|gb|ACN83352.1| ferrous iron transport protein B [Brachyspira hyodysenteriae WA1]
          Length = 829

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +KI + G+ N+GK+++FNAL   +   V + PG T +    ++   GY   + D  G+  
Sbjct: 119 FKIALAGNPNSGKTTIFNALTGANYK-VANYPGVTVEKRQANMLYNGYTYDLIDLPGVYS 177

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                + E +    L  E  D I+
Sbjct: 178 LSAYSQDEVVACDVLLNEKPDFII 201


>gi|223984579|ref|ZP_03634706.1| hypothetical protein HOLDEFILI_02002 [Holdemania filiformis DSM
           12042]
 gi|223963426|gb|EEF67811.1| hypothetical protein HOLDEFILI_02002 [Holdemania filiformis DSM
           12042]
          Length = 200

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLD 263
           +IV+ G SN GKSSL N L  +K +A V + PG TR +   D+D
Sbjct: 25  EIVLAGRSNVGKSSLINTLCGRKALAYVGNTPGKTRLLNFFDID 68


>gi|218904832|ref|YP_002452666.1| GTP-binding protein [Bacillus cereus AH820]
 gi|218535435|gb|ACK87833.1| GTP-binding protein [Bacillus cereus AH820]
          Length = 425

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 198 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 256

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 257 QDLPTSLIAAFRSTLEEAGEADVIL 281


>gi|167756890|ref|ZP_02429017.1| hypothetical protein CLORAM_02439 [Clostridium ramosum DSM 1402]
 gi|237734600|ref|ZP_04565081.1| ribosomal biogenesis GTPase [Mollicutes bacterium D7]
 gi|167703065|gb|EDS17644.1| hypothetical protein CLORAM_02439 [Clostridium ramosum DSM 1402]
 gi|229382420|gb|EEO32511.1| ribosomal biogenesis GTPase [Coprobacillus sp. D7]
          Length = 288

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 13/99 (13%)

Query: 183 DVQNFSSKEVLNDIL--FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +++NF+  +++ D+    LK  +     +G     +R     ++LG  N GKS+  N LA
Sbjct: 88  NLKNFNEYQLVIDVCKEILKEKMEREAKRGLKPRAMR----AMVLGIPNVGKSTFINRLA 143

Query: 241 KKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277
           K+   +  + PG T+   ++ +D D E +     DT G+
Sbjct: 144 KRKATVTGNRPGVTKAQQIIRVDKDFELF-----DTPGV 177


>gi|157414706|ref|YP_001481962.1| GTP-binding protein [Campylobacter jejuni subsp. jejuni 81116]
 gi|157385670|gb|ABV51985.1| putative ATP/GTP binding protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747346|gb|ADN90616.1| GTP-binding protein [Campylobacter jejuni subsp. jejuni M1]
          Length = 728

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           + I I G  NAGKSSL NAL K+D   V++IP T 
Sbjct: 163 FNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETA 197


>gi|158520022|ref|YP_001527892.1| GTP-binding protein HSR1-related [Desulfococcus oleovorans Hxd3]
 gi|158508848|gb|ABW65815.1| GTP-binding protein HSR1-related [Desulfococcus oleovorans Hxd3]
          Length = 565

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 23/177 (12%)

Query: 142 QRRLSMEG----MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           QR  SMEG       +L  L  + + K T +             E     + + V + + 
Sbjct: 301 QRAQSMEGKLQVAHAQLKYLLPRLVTKNTAMSRLTGGIGGRGPGETKLEINRRRVRDQLA 360

Query: 198 FLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDI---- 250
            L+  + S   Q +  +  R+      I ILG++NAGKS+L N L+K  VA    +    
Sbjct: 361 RLEKQLESIKKQRRQQKARRDKRALPVISILGYTNAGKSTLLNTLSKSGVATADRLFMTL 420

Query: 251 -PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE---GIKRTFLEVENADLIL 303
            P + R     ++D     V ++DT G  +    + KE     + T  E+E ADL +
Sbjct: 421 DPASRRIRFPREMD-----VILTDTVGFIQN---LPKELMVAFRATLEELERADLFI 469


>gi|157959931|ref|YP_001499965.1| ribosome biogenesis GTP-binding protein YsxC [Shewanella pealeana
           ATCC 700345]
 gi|189037190|sp|A8GYP3|ENGB_SHEPA RecName: Full=Probable GTP-binding protein EngB
 gi|157844931|gb|ABV85430.1| GTP-binding protein HSR1-related [Shewanella pealeana ATCC 700345]
          Length = 225

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 10/70 (14%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTID- 261
           +H+++   G++   G +I   G SNAGKSS  N L ++ +A  +  PG T+  +V  +D 
Sbjct: 21  AHLNEYLPGDV---GVEIAFAGRSNAGKSSALNLLTEQKIARTSKTPGRTQLINVFRLDK 77

Query: 262 ----LDLEGY 267
               +DL GY
Sbjct: 78  HRRLVDLPGY 87


>gi|118478930|ref|YP_896081.1| GTP-binding protein [Bacillus thuringiensis str. Al Hakam]
 gi|118418155|gb|ABK86574.1| GTP-binding protein HflX [Bacillus thuringiensis str. Al Hakam]
          Length = 425

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 198 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 256

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 257 QDLPTSLIAAFRSTLEEAGEADVIL 281


>gi|116251278|ref|YP_767116.1| GTP-binding protein Era [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255926|emb|CAK07007.1| putative GTP and RNA-binding cell cycle regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 313

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 24  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++  +   +    +ADLI+LL
Sbjct: 84  RRLDRAMVTSAWGGARDADLIVLL 107


>gi|104774144|ref|YP_619124.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514234|ref|YP_813140.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122275034|sp|Q04A20|ERA_LACDB RecName: Full=GTPase Era
 gi|122983938|sp|Q1G9W6|ERA_LACDA RecName: Full=GTPase Era
 gi|103423225|emb|CAI98053.1| GTP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116093549|gb|ABJ58702.1| GTPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325125924|gb|ADY85254.1| GTP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 301

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + VAI +  P TTR+ ++     +   V   DT GI ++ 
Sbjct: 12  VALVGRPNVGKSTLMNRLIGQKVAITSAKPQTTRNKISGIYTEDDMQVVFVDTPGIFKSH 71

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++   K +   +++ DL++ +
Sbjct: 72  SDLDEYMDKASLSSLKDVDLVMFM 95


>gi|326469475|gb|EGD93484.1| hypothetical protein TESG_01028 [Trichophyton tonsurans CBS 112818]
          Length = 320

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 29/176 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKIS--DTAGI 277
           ++V +G SN GKSS+ N L  +D+   +  PG T+ +    +  ++G   KI+  D+ G 
Sbjct: 109 EVVFMGRSNVGKSSVINMLVGEDICYTSATPGRTQTMNAFGVGGMKGGETKINIIDSPGY 168

Query: 278 RETDD----------IVEKEGIKRTFLEVE------NAD--LILLLKEINSKKEISFPKN 319
            +             + +++ ++R FL +E      N+D  ++ +L+E     +I   K 
Sbjct: 169 GKASRPEWGHELMKYLSKRQQLRRVFLIIECKAGVKNSDKEVLSILREFTVPHQIIVSKA 228

Query: 320 IDFIF---IGTKSDLYSTYTEEYDHLISSFTGE---GLEELINKIKSIL--SNKFK 367
            +FI     G      +   +++  +IS    E    LEE I  +  IL  SNK +
Sbjct: 229 DNFITEDRAGNHEAHRTASLKQFRQIISRIRKEVTPTLEEGIPPLGDILACSNKIR 284


>gi|300023207|ref|YP_003755818.1| GTP-binding proten HflX [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525028|gb|ADJ23497.1| GTP-binding proten HflX [Hyphomicrobium denitrificans ATCC 51888]
          Length = 467

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 30/184 (16%)

Query: 220 YKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y IV ++G++NAGKS+LFN +    V +  D    T D    ++ L     + +SDT G 
Sbjct: 233 YPIVAVVGYTNAGKSTLFNKITGAGV-VAMDQVFATLDPTMREVKLPSARRIILSDTVGF 291

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF------------- 324
                       + T  EV  ADLIL +++I  ++  +  ++++ +              
Sbjct: 292 ISDLPTSLVAAFRATLEEVVEADLILHVRDIAHEETEAQARDVEKVLSELGIDTLPVDGH 351

Query: 325 ---IGTKSDLYS-TYTEEYDH----------LISSFTGEGLEELINKIKSILSNKFKKLP 370
              +  K DL +     E  H          L+S+ TGEG+  L++ I S LS   + L 
Sbjct: 352 IQEVWNKIDLLTGDRRAELQHEAQRNERPPVLVSAVTGEGIVPLLDAIDSRLSVADEILD 411

Query: 371 FSIP 374
             IP
Sbjct: 412 VIIP 415


>gi|229174365|ref|ZP_04301898.1| hypothetical protein bcere0006_34580 [Bacillus cereus MM3]
 gi|228609222|gb|EEK66511.1| hypothetical protein bcere0006_34580 [Bacillus cereus MM3]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|227488410|ref|ZP_03918726.1| GTP-binding protein Era [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091624|gb|EEI26936.1| GTP-binding protein Era [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 308

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI  + P TTR  +   +  +   V + DT G
Sbjct: 16  RSGF-VSFVGRPNTGKSTLTNALVGQKIAITANQPETTRHPIRGIVHRDDAQVIVVDTPG 74

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ +   E +K T+ +V+
Sbjct: 75  LHRPRTLLGERLNEQVKETYADVD 98


>gi|260881589|ref|ZP_05404771.2| GTP-binding protein Era [Mitsuokella multacida DSM 20544]
 gi|260848446|gb|EEX68453.1| GTP-binding protein Era [Mitsuokella multacida DSM 20544]
          Length = 323

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGI 277
           I ++G  N GKS+L N L  + +AI++D P TT++ +L I  + +  +V + DT GI
Sbjct: 34  IAVIGRPNVGKSTLINTLIGQKIAIMSDKPQTTQNRILCILTEPDAQIVFL-DTPGI 89


>gi|183983654|ref|YP_001851945.1| GTP-binding protein Era [Mycobacterium marinum M]
 gi|183176980|gb|ACC42090.1| GTP-binding protein Era [Mycobacterium marinum M]
          Length = 300

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NAL    VAI +  P TTR  +   +  E + + + DT G+    
Sbjct: 10  VCLVGRPNTGKSTLTNALVGTKVAITSMRPQTTRHTIRGIVHRESFQIILVDTPGLHRPR 69

Query: 282 DIVEK---EGIKRTFLEVE 297
            ++ K   + ++ T+ EV+
Sbjct: 70  TLLGKRLNDLVRDTYSEVD 88


>gi|331695958|ref|YP_004332197.1| GTP-binding proten HflX [Pseudonocardia dioxanivorans CB1190]
 gi|326950647|gb|AEA24344.1| GTP-binding proten HflX [Pseudonocardia dioxanivorans CB1190]
          Length = 493

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 39/184 (21%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + I+G++NAGKSSL NAL    V    A+   +  TTR   T D    G    ++DT G 
Sbjct: 270 VAIVGYTNAGKSSLLNALTDAGVLVEDALFATLDPTTRRAETPD----GRDYTLTDTVGF 325

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFP 317
           +R     +  E  + T  E   ADL++                   +L EI  +++   P
Sbjct: 326 VRHLPHQL-VEAFRSTLEETAQADLLVHVVDASDPLPEDQIAAVRKVLVEIGEEQQGRMP 384

Query: 318 KNIDFIF-IGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKIKSILSNKFKKLP 370
             +  +  I    DL         HL      +S+ TG G+  L  +I  +L N   ++ 
Sbjct: 385 PELLVVNKIDAAGDL---QLARLRHLLPDAVFVSAHTGAGVSLLRRRIAELLPNPEVEVE 441

Query: 371 FSIP 374
             +P
Sbjct: 442 LLVP 445


>gi|326692993|ref|ZP_08229998.1| GTPase [Leuconostoc argentinum KCTC 3773]
          Length = 303

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   V   DT G
Sbjct: 7   KSGF-VAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDNAQVVFIDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           + +  + +    +K  F  +  AD I  +
Sbjct: 66  VHKPQNSLGDFMVKSAFSALHEADAIWFV 94


>gi|325842918|ref|ZP_08167791.1| GTP-binding protein HflX [Turicibacter sp. HGF1]
 gi|325489520|gb|EGC91887.1| GTP-binding protein HflX [Turicibacter sp. HGF1]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 26/189 (13%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           RN   +V L G++NAGKS+  NAL K   + + D     +++L   L+     +++ D  
Sbjct: 192 RNATPVVALVGYTNAGKSTTMNALLKISNSQL-DKVVFEKNMLFATLETSTRQIQLPDNK 250

Query: 276 GIRETDDI--VEK------EGIKRTFLEVENADLILLL-----KEINSKKEISFP----- 317
               TD +  V K      +  + T  EV  ADL+L +      E  ++ EI+       
Sbjct: 251 QFLLTDTVGFVSKLPHQLVKAFRSTLEEVTEADLLLHVVDLSHPEFETQIEITNKVLAEL 310

Query: 318 --KNIDFIFIGTKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  +++  KSDL     +  T++    IS+   E ++ELIN IK  +   + K  F
Sbjct: 311 GVSETPMVYVYNKSDLAPDEIAPPTDQDSVRISAKNLENIDELINMIKHHIFQNYVKATF 370

Query: 372 SIPSHKRHL 380
            IP  + +L
Sbjct: 371 LIPYDRGNL 379


>gi|319407328|emb|CBI80971.1| GTP-binding protein hflX [Bartonella sp. 1-1C]
          Length = 448

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 16/141 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I ++G++NAGKS+LFN L+  +V +  D+   T D     + L  G  V +SDT G    
Sbjct: 221 IALVGYTNAGKSTLFNRLSDSNV-LAEDMLFATLDPTLRKIVLPHGQTVLLSDTVGFISN 279

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
                    + T  EV  ADLIL +++++     +  +++  I      D+  T     D
Sbjct: 280 LPTHLIAAFRATLEEVIEADLILHVRDVSDPDHYAHAQDVFEILSDLGVDINDT-----D 334

Query: 341 HLISSFTGEGLEELINKIKSI 361
           H++         E+ NKI ++
Sbjct: 335 HIV---------EIWNKIDTL 346


>gi|282856770|ref|ZP_06266031.1| ribosome biogenesis GTP-binding protein YsxC [Pyramidobacter
           piscolens W5455]
 gi|282585393|gb|EFB90700.1| ribosome biogenesis GTP-binding protein YsxC [Pyramidobacter
           piscolens W5455]
          Length = 198

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           ++ + G SN GKSSL N LA + +A V+  PG TR V
Sbjct: 25  EVALAGRSNVGKSSLLNKLAGQKLARVSSEPGMTRSV 61


>gi|242033759|ref|XP_002464274.1| hypothetical protein SORBIDRAFT_01g015410 [Sorghum bicolor]
 gi|241918128|gb|EER91272.1| hypothetical protein SORBIDRAFT_01g015410 [Sorghum bicolor]
          Length = 600

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I+G  N GKSSL N+L +  V  V   PG TR +  + LD +   VK+ D  G+
Sbjct: 272 VGIVGLPNVGKSSLINSLKRSRVVNVGSTPGVTRAMQEVQLDKK---VKLLDCPGV 324


>gi|159885612|dbj|BAF93184.1| nitric oxide associated 1 [Nicotiana benthamiana]
          Length = 568

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 15/74 (20%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-------------AKKDVAIVTDIPGTTRDVLTIDLD 263
           + G  + ILG +N GKS+  NAL             A+K   I + +PGTT   + ID  
Sbjct: 282 KKGRDVYILGSANVGKSAFINALLNTMSYNDPVAATARKYKPIQSAVPGTTLGPIPIDAF 341

Query: 264 LEGYLVKISDTAGI 277
           L G   K+ DT G+
Sbjct: 342 LGGG--KVYDTPGV 353


>gi|90424082|ref|YP_532452.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris
           BisB18]
 gi|90106096|gb|ABD88133.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris
           BisB18]
          Length = 461

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 33/189 (17%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           R  Y++V L G++NAGKS+LFN L + +V    D+   T D     L L  G    +SDT
Sbjct: 222 RVPYRVVALVGYTNAGKSTLFNRLTRAEVQ-AADMLFATLDPTLRALTLPHGGKAMLSDT 280

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---------- 324
            G             + T  EV  ADLIL +++I  +   +   ++  +           
Sbjct: 281 VGFISNLPTQLVAAFRATLEEVLEADLILHVRDIAHEDADAQQDDVAAVLRQLGIDPEAG 340

Query: 325 -------IGTKSDLYS----------TYTEEYDH---LISSFTGEGLEELINKIKSILSN 364
                  +  K D ++              + +H   L+S+ TGEG++ L+  I+  L+ 
Sbjct: 341 GGGRIIEVWNKIDRFAADELANLRNIAARRDPEHPCLLVSAVTGEGIDALLLAIEDRLAA 400

Query: 365 KFKKLPFSI 373
               L  SI
Sbjct: 401 ARITLDLSI 409


>gi|327408311|emb|CCA30122.1| nucleolar GTP-binding protein NOG2, putative [Neospora caninum
           Liverpool]
          Length = 633

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ NAL  K V     IPG TR    + L    YL+   D  G
Sbjct: 349 RKHVSVGFIGYPNVGKSSVINALRSKQVCRAAPIPGETRVWQYVALTKRLYLI---DCPG 405

Query: 277 I 277
           I
Sbjct: 406 I 406


>gi|322824721|gb|EFZ30032.1| small GTP-binding protein, putative [Trypanosoma cruzi]
          Length = 450

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I ++G +N+GKSSL N L   + +   D   +TRD + +    +G  +K+ DTAG+
Sbjct: 183 RIALVGRTNSGKSSLINRLVGFERSRAVDEKNSTRDPVELPCIYKGRKMKLIDTAGL 239


>gi|319404324|emb|CBI77919.1| GTP-binding protein HflX [Bartonella rochalimae ATCC BAA-1498]
          Length = 448

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 16/141 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I ++G++NAGKS+LFN L+  +V +  D+   T D     + L  G  V +SDT G    
Sbjct: 221 IALVGYTNAGKSTLFNHLSDSNV-LAEDMLFATLDPTLRKIVLPHGQTVLLSDTVGFISN 279

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
                    + T  EV  ADLIL +++++     +  +++  I      D+  T     D
Sbjct: 280 LPTHLIAAFRATLEEVIEADLILHVRDVSDPDHYAHAQDVFEILSDLGVDINDT-----D 334

Query: 341 HLISSFTGEGLEELINKIKSI 361
           H++         E+ NKI ++
Sbjct: 335 HIV---------EIWNKIDTL 346


>gi|315926676|gb|EFV06055.1| GTP-binding domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 280

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           + I I G  NAGKSSL NAL K+D   V++IP T 
Sbjct: 163 FNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETA 197


>gi|311068126|ref|YP_003973049.1| ribosomal biogenesis GTPase [Bacillus atrophaeus 1942]
 gi|310868643|gb|ADP32118.1| ribosomal biogenesis GTPase [Bacillus atrophaeus 1942]
          Length = 281

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 13/90 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           SSKE+L +           I + K   +     + +I+G  N GKS+L N LAKK++A  
Sbjct: 99  SSKELLQE----------KIDKRKAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKT 148

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            D PG T     + +   G  +++ DT GI
Sbjct: 149 GDRPGITISQQWVKV---GKELELLDTPGI 175


>gi|303232238|ref|ZP_07318937.1| GTP-binding protein Era [Atopobium vaginae PB189-T1-4]
 gi|302481648|gb|EFL44709.1| GTP-binding protein Era [Atopobium vaginae PB189-T1-4]
          Length = 306

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + ++G  + GKS+L NA     +AI + +  TTR  L   +  +   + + DT G
Sbjct: 13  KSGF-VALVGRPSVGKSTLLNACYGGKIAITSKVAQTTRKRLRAVITSDTSQIILVDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           + +  D + K   +   LE+ + +++ LL
Sbjct: 72  LHKPQDALGKTLNQTALLELNDVEVVALL 100


>gi|288556892|ref|YP_003428827.1| GTP binding protein YnbA [Bacillus pseudofirmus OF4]
 gi|288548052|gb|ADC51935.1| YnbA GTP binding protein [Bacillus pseudofirmus OF4]
          Length = 423

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           ++ ++G++NAGKS+L N L K D  +  D    T D  T  L L  G+ V +SDT G  +
Sbjct: 202 QLALVGYTNAGKSTLLNRLTKADT-LEEDQLFATLDPTTRQLHLPSGFSVLMSDTVGFIQ 260

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                     + T  E++ ADL+L
Sbjct: 261 DLPTTLVASFRSTLEELKEADLLL 284


>gi|238060555|ref|ZP_04605264.1| GTP-binding protein Era [Micromonospora sp. ATCC 39149]
 gi|237882366|gb|EEP71194.1| GTP-binding protein Era [Micromonospora sp. ATCC 39149]
          Length = 301

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   + G  NAGKS+L NAL    +AI ++ P TTR ++   L      + + DT G
Sbjct: 13  RAGFACFV-GRPNAGKSTLTNALVGTKIAITSNKPQTTRHIIRAVLHRPDSQLVLVDTPG 71

Query: 277 I 277
           +
Sbjct: 72  L 72


>gi|119953438|ref|YP_945647.1| GTP-binding protein Era [Borrelia turicatae 91E135]
 gi|254783287|sp|A1R085|ERA_BORT9 RecName: Full=GTPase Era
 gi|119862209|gb|AAX17977.1| GTP-binding protein era-like [Borrelia turicatae 91E135]
          Length = 290

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDT 274
           +++G+ + I+G  + GKS+L N++ +  ++I++ IP TTR+ +  I  D  G ++ I DT
Sbjct: 1   MKSGF-VSIIGRPSTGKSTLLNSICEHQISIISSIPQTTRNKIKGIFTDKRGQIIFI-DT 58

Query: 275 AG 276
            G
Sbjct: 59  PG 60


>gi|85712959|ref|ZP_01043998.1| GTPase Era [Idiomarina baltica OS145]
 gi|85693197|gb|EAQ31156.1| GTPase Era [Idiomarina baltica OS145]
          Length = 315

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 49/220 (22%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YL 268
           G++ E  + G+ + I+G  N GKS++ N +  + V+I +  P TTR  + + +D EG Y 
Sbjct: 15  GQIDENKQCGF-VAIVGRPNVGKSTMLNRILGQKVSITSSKPQTTRHRI-LGVDTEGDYQ 72

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLE-----VENADLILLLKE-----------INSKK 312
               DT G+     + E   I R   +     +++ DLIL + E           +   K
Sbjct: 73  TVYVDTPGMH----LEEPRAINRVMNQTASSALKDVDLILFVVENTRWNDDDVMVLEKLK 128

Query: 313 EISFPKNIDFIFIGTKSDLYSTYTEEYDHL--------------ISSFTGEGLEELINKI 358
           +   P     + +  K D      +   HL              +S+ TG+ LE L + +
Sbjct: 129 KTETP----IVLVVNKVDQIKDKNKLLPHLQWLSQQLSVKEIIPVSAKTGDNLEPLRDIV 184

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           K  L + +   P          Y   ++VR++    + EK
Sbjct: 185 KGFLQSGYHFYPAD--------YVTDRSVRFMTAEIIREK 216


>gi|303236850|ref|ZP_07323429.1| GTP-binding protein Era [Prevotella disiens FB035-09AN]
 gi|302483018|gb|EFL46034.1| GTP-binding protein Era [Prevotella disiens FB035-09AN]
          Length = 293

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ E   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGEKISIATFKAQTTRHRIMGIVNTEDMQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
           +++  +  +   + +AD++L + ++  K E    KN +F+    K D+
Sbjct: 69  MQEMMLHFSESALADADILLYVTDVIEKPE----KNSEFLEKVAKMDI 112


>gi|298507297|gb|ADI86020.1| ferrous iron transport protein B, putative [Geobacter
           sulfurreducens KN400]
          Length = 747

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G+ N+GKS+L NA+A   +  V +  G T +      + +G  +++ D  G     
Sbjct: 34  VAVAGNPNSGKSTLINAIAGTRLQ-VGNWAGVTVEKKEASFEFQGRKIRLVDLPGTYSLS 92

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
              ++E I R +L  E  DLI+
Sbjct: 93  PYTQEEIIARDYLVHERPDLII 114


>gi|297616506|ref|YP_003701665.1| ribosome biogenesis GTP-binding protein YsxC [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144343|gb|ADI01100.1| ribosome biogenesis GTP-binding protein YsxC [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 198

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           I + G SN GKSSL N LA ++++A+ +  PG TR +     D   +LV
Sbjct: 29  IALAGRSNVGKSSLINCLANRRNLALTSSTPGKTRTINYYLFDDAWFLV 77


>gi|295695837|ref|YP_003589075.1| ribosome biogenesis GTPase YqeH [Bacillus tusciae DSM 2912]
 gi|295411439|gb|ADG05931.1| ribosome biogenesis GTPase YqeH [Bacillus tusciae DSM 2912]
          Length = 363

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 9/83 (10%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALA-----KKDVAIVTD-IPGTTRDVLTIDLD 263
           G L ++ R    +  +G +N GKSSL NAL        D  + T  +PGTT + +TID  
Sbjct: 145 GLLADLNRVDGAVYFMGAANTGKSSLLNALMGAAEISSDRPLTTSRVPGTTLNAVTID-- 202

Query: 264 LEGYLVKISDTAGIRETDDIVEK 286
             G   K  DT GI     +V++
Sbjct: 203 -RGEGRKWVDTPGITAGYRVVDR 224


>gi|283955834|ref|ZP_06373325.1| LOW QUALITY PROTEIN: putative ATP/GTP binding protein
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792789|gb|EFC31567.1| LOW QUALITY PROTEIN: putative ATP/GTP binding protein
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 728

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           + I I G  NAGKSSL NAL K+D   V++IP T 
Sbjct: 163 FNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETA 197


>gi|228922418|ref|ZP_04085722.1| hypothetical protein bthur0011_34060 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837243|gb|EEM82580.1| hypothetical protein bthur0011_34060 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 447

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 220 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 278

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 279 QDLPTSLIAAFRSTLEEAGEADVIL 303


>gi|228470781|ref|ZP_04055629.1| GTP-binding protein HflX [Porphyromonas uenonis 60-3]
 gi|228307454|gb|EEK16459.1| GTP-binding protein HflX [Porphyromonas uenonis 60-3]
          Length = 411

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 57/227 (25%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTR 255
           K D    + +   G+++R    + ++G++N GKS+L N LAK D+     +   +  T R
Sbjct: 187 KIDKQKSVQRQNRGKMVR----VALVGYTNVGKSTLMNVLAKSDIFAENKLFATLDTTVR 242

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------ 309
            V+  +L    +L  ++DT G          E  K T  EV  +DLIL + +I+      
Sbjct: 243 KVVLGNL---AFL--LADTVGFIRKLPTQLVESFKSTLDEVRESDLILHVVDISHPEFED 297

Query: 310 -------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------------------- 342
                  + +EI    +   I +  K D Y    ++ D L                    
Sbjct: 298 QIAVVTETLREIDALGDKPQILVFNKIDAYQHIPKDPDDLTPATKLNRTREELEKSWMAR 357

Query: 343 -------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                  IS+ TGEG++EL    + +L ++ K++      +   LY 
Sbjct: 358 MGNDCTFISARTGEGMDEL----RRLLYDRVKEIHIQRYPYNDFLYQ 400


>gi|223983894|ref|ZP_03634054.1| hypothetical protein HOLDEFILI_01335 [Holdemania filiformis DSM
           12042]
 gi|223964086|gb|EEF68438.1| hypothetical protein HOLDEFILI_01335 [Holdemania filiformis DSM
           12042]
          Length = 664

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 220 YKIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +K+ + G+ N+GK++LFN L  +K+ V    + PG T +       +E + + + D  GI
Sbjct: 3   FKVALAGNPNSGKTTLFNRLTGSKQHVG---NWPGVTIEKKEGSFQIEEHEITLVDLPGI 59

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL 303
                   +E + R F+  E+ DLIL
Sbjct: 60  YSMSVYSMEEIVARDFIMDEHPDLIL 85


>gi|118618892|ref|YP_907224.1| GTP-binding protein Era [Mycobacterium ulcerans Agy99]
 gi|118571002|gb|ABL05753.1| GTP-binding protein Era [Mycobacterium ulcerans Agy99]
          Length = 300

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NAL    VAI +  P TTR  +   +  E + + + DT G+    
Sbjct: 10  VCLVGRPNTGKSTLTNALVGTKVAITSMRPQTTRHTIRGIVHRESFQIILVDTPGLHRPR 69

Query: 282 DIVEK---EGIKRTFLEVE 297
            ++ K   + ++ T+ EV+
Sbjct: 70  TLLGKRLNDLVRDTYSEVD 88


>gi|49479206|ref|YP_037773.1| GTP-binding protein (hflX) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|167636061|ref|ZP_02394367.1| GTP-binding protein [Bacillus anthracis str. A0442]
 gi|170689290|ref|ZP_02880485.1| GTP-binding protein [Bacillus anthracis str. A0465]
 gi|196034242|ref|ZP_03101652.1| GTP-binding protein [Bacillus cereus W]
 gi|196038329|ref|ZP_03105638.1| GTP-binding protein [Bacillus cereus NVH0597-99]
 gi|196044450|ref|ZP_03111685.1| GTP-binding protein [Bacillus cereus 03BB108]
 gi|254721131|ref|ZP_05182922.1| GTP-binding protein (hflX) [Bacillus anthracis str. A1055]
 gi|49330762|gb|AAT61408.1| GTP-binding protein (hflX) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|167528573|gb|EDR91335.1| GTP-binding protein [Bacillus anthracis str. A0442]
 gi|170666748|gb|EDT17516.1| GTP-binding protein [Bacillus anthracis str. A0465]
 gi|195993316|gb|EDX57274.1| GTP-binding protein [Bacillus cereus W]
 gi|196024485|gb|EDX63157.1| GTP-binding protein [Bacillus cereus 03BB108]
 gi|196030737|gb|EDX69335.1| GTP-binding protein [Bacillus cereus NVH0597-99]
          Length = 425

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 198 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 256

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 257 QDLPTSLIAAFRSTLEEAGEADVIL 281


>gi|52783194|sp|Q6TGJ8|NOG2_CRYGA RecName: Full=Nucleolar GTP-binding protein 2
 gi|46403027|gb|AAS92523.1| NOG2 [Cryptococcus gattii]
          Length = 731

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  GI
Sbjct: 341 VGFIGYPNTGKSSIINTLKKKKVCTVAPIPGETKVWQYITLMRRIYLI---DCPGI 393


>gi|47569228|ref|ZP_00239914.1| GTP-binding protein [Bacillus cereus G9241]
 gi|47554102|gb|EAL12467.1| GTP-binding protein [Bacillus cereus G9241]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|322391618|ref|ZP_08065087.1| GTP-binding protein HflX [Streptococcus peroris ATCC 700780]
 gi|321145701|gb|EFX41093.1| GTP-binding protein HflX [Streptococcus peroris ATCC 700780]
          Length = 412

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNTLTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPRLTLY 317

Query: 327 TKSDLYSTYTEEYD--HLISSFTGEGLEE----LINKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL   +T       LIS+   +  E+    L++KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVENFTPTQMPFALISAKYKDSREQLQALLLDKIKEIFEPFTLRVPFS-KSYKIH 375


>gi|300933265|ref|ZP_07148521.1| GTP-binding protein Era [Corynebacterium resistens DSM 45100]
          Length = 321

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  +   + + DT G
Sbjct: 28  RSGF-VSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHPIRGVIHRDDSQIVVVDTPG 86

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ +   E +K T+ +V+
Sbjct: 87  LHRPRTLLGERLNEIVKDTYQDVD 110


>gi|262273709|ref|ZP_06051522.1| GTP-binding protein Era [Grimontia hollisae CIP 101886]
 gi|262222124|gb|EEY73436.1| GTP-binding protein Era [Grimontia hollisae CIP 101886]
          Length = 304

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  ++ +D   +GY     DT G+   
Sbjct: 13  IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTR-DGYQAVYVDTPGLH-- 69

Query: 281 DDIVEKEGIKR 291
             I EK  I R
Sbjct: 70  --IEEKRTINR 78


>gi|238853781|ref|ZP_04644147.1| ribosome biogenesis GTPase YqeH [Lactobacillus gasseri 202-4]
 gi|238833590|gb|EEQ25861.1| ribosome biogenesis GTPase YqeH [Lactobacillus gasseri 202-4]
          Length = 369

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 222 IVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I  +G +N GKS+L NA+       KDV   +  PGTT D + I L    YL+   DT G
Sbjct: 169 IYFVGTTNVGKSTLINAIINMNSDLKDVITTSKFPGTTLDEIKIPLSNGHYLI---DTPG 225

Query: 277 IRETDDIV 284
           I   + + 
Sbjct: 226 ILNANQLA 233


>gi|237747082|ref|ZP_04577562.1| GTP-binding protein [Oxalobacter formigenes HOxBLS]
 gi|229378433|gb|EEO28524.1| GTP-binding protein [Oxalobacter formigenes HOxBLS]
          Length = 292

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++I+G  N GKS+L N L K+ VA V D P  T+    + LD    L   +DT G+
Sbjct: 118 RMMIMGIPNVGKSTLMNMLLKRRVAAVGDEPAVTKSQQRLYLDRRMVL---TDTPGL 171


>gi|218702481|ref|YP_002410110.1| putative GTPase [Escherichia coli IAI39]
 gi|218372467|emb|CAR20343.1| conserved hypothetical protein; putataive GTPase [Escherichia coli
           IAI39]
          Length = 294

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 83/199 (41%), Gaps = 15/199 (7%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHGVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTFLEVENADLILLLK 306
            + G TR    + L +    + + D  GI ET   D   +E  ++   E++    IL   
Sbjct: 68  PLNGCTRQAHRLTLQIGERRMTLVDLPGIGETPQHDQEYRELYRQLLPELDLIIWILRAD 127

Query: 307 EINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELI 355
           E     +I+  + +         F+F+ + +D      EE++      S      L  + 
Sbjct: 128 ERAYAADIAMHQFLLNEGADPSRFLFVLSHADRVFP-AEEWNATEKCPSRHQELSLATVT 186

Query: 356 NKIKSILSNKFKKLPFSIP 374
            ++ ++  + F  LP + P
Sbjct: 187 ARVATLFPSSFPVLPVAAP 205


>gi|205374162|ref|ZP_03226962.1| GTP-binding protein Era [Bacillus coahuilensis m4-4]
          Length = 306

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +   L L    +   DT G
Sbjct: 11  KSGF-VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTLADSQIVFIDTPG 69

Query: 277 IRE 279
           I +
Sbjct: 70  IHK 72


>gi|151221426|ref|YP_001332248.1| hypothetical protein NWMN_1214 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|150374226|dbj|BAF67486.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
          Length = 412

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 206 FQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 289


>gi|119961417|ref|YP_947969.1| GTP-binding protein Era [Arthrobacter aurescens TC1]
 gi|119948276|gb|ABM07187.1| GTP-binding protein Era [Arthrobacter aurescens TC1]
          Length = 347

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           V++G  NAGKS+L NAL  + VAI +  P TTR  +   +  +   + + DT G+     
Sbjct: 50  VLVGRPNAGKSTLTNALVGQKVAITSAKPQTTRHTIRGIVHRDDAQLILVDTPGLHRPRT 109

Query: 283 IVEK---EGIKRTFLEVE 297
           ++ K   E +  T  EV+
Sbjct: 110 LLGKRLNELVADTLAEVD 127


>gi|295109868|emb|CBL23821.1| GTP-binding protein Era [Ruminococcus obeum A2-162]
          Length = 302

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKS+L N L  + +AI +  P TTR+ +      +   +   DT GI +  + 
Sbjct: 12  IIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTCDDGQIVFLDTPGIHKAKNK 71

Query: 284 VEKEGIKRTFLEVENADLILLLKE 307
           + +  ++     +++ D+IL L E
Sbjct: 72  LGEYMVQVAERTLKDVDVILWLVE 95


>gi|282850278|ref|ZP_06259657.1| GTP-binding protein Era [Veillonella parvula ATCC 17745]
 gi|282579771|gb|EFB85175.1| GTP-binding protein Era [Veillonella parvula ATCC 17745]
          Length = 299

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + ++G  N GKS+L NAL    +AIV+D   TTR+ +      E   +   D
Sbjct: 5   EHFKSGF-VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDESKQIVFMD 63

Query: 274 TAGI 277
           T G+
Sbjct: 64  TPGV 67


>gi|302525521|ref|ZP_07277863.1| GTP-binding protein HflX [Streptomyces sp. AA4]
 gi|302434416|gb|EFL06232.1| GTP-binding protein HflX [Streptomyces sp. AA4]
          Length = 481

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 13/113 (11%)

Query: 199 LKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIP 251
           L+ +I++   I + K G+ + N    + I+G++NAGKSSL NAL    V    A+   + 
Sbjct: 230 LRREIAAMDTIRETKRGKRVANEVPSVAIVGYTNAGKSSLLNALTGAGVLVEDALFATLD 289

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
            TTR   T D    G    ++DT G +R     +  +  + T  E  +ADL+L
Sbjct: 290 PTTRRAQTAD----GRTFTLTDTVGFVRHLPHQL-VDAFRSTLEEAADADLLL 337


>gi|239503241|ref|ZP_04662551.1| GTPase EngB [Acinetobacter baumannii AB900]
          Length = 258

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL--------DLEGY 267
           +GY+I   G SNAGKSS  NAL  +K +A  +  PG T+ +    L        DL GY
Sbjct: 60  SGYEIAFAGRSNAGKSSAINALTNQKQLARASKKPGRTQMINFFSLGNPDQRLVDLPGY 118


>gi|269798051|ref|YP_003311951.1| GTP-binding protein Era [Veillonella parvula DSM 2008]
 gi|269094680|gb|ACZ24671.1| GTP-binding protein Era [Veillonella parvula DSM 2008]
          Length = 299

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + ++G  N GKS+L NAL    +AIV+D   TTR+ +      E   +   D
Sbjct: 5   EHFKSGF-VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDESKQIVFMD 63

Query: 274 TAGI 277
           T G+
Sbjct: 64  TPGV 67


>gi|29347002|ref|NP_810505.1| putative ferrous iron transport protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253572640|ref|ZP_04850041.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29338900|gb|AAO76699.1| putative ferrous iron transport protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837772|gb|EES65862.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 828

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N+GK+SLFN LA      V +  G T D      D EGY  +I D  G
Sbjct: 109 RRTINVALVGNPNSGKTSLFN-LASGAHEHVGNYSGVTVDAKEGYFDFEGYHFRIVDLPG 167

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
                    +E   R  +  E  D+I+
Sbjct: 168 TYSLSAYTPEEIYVRRHIVDETPDVII 194


>gi|134110392|ref|XP_776023.1| hypothetical protein CNBD0720 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258691|gb|EAL21376.1| hypothetical protein CNBD0720 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 719

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  GI
Sbjct: 329 VGFIGYPNTGKSSIINTLKKKKVCTVAPIPGETKIWQYITLMRRIYLI---DCPGI 381


>gi|315932654|gb|EFV11584.1| GTP binding protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 714

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           + I I G  NAGKSSL NAL K+D   V++IP T 
Sbjct: 149 FNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETA 183


>gi|295427793|ref|ZP_06820425.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|295128151|gb|EFG57785.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           EMRSA16]
          Length = 415

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 209 FQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 263

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 264 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 292


>gi|225019340|ref|ZP_03708532.1| hypothetical protein CLOSTMETH_03293 [Clostridium methylpentosum
           DSM 5476]
 gi|224947971|gb|EEG29180.1| hypothetical protein CLOSTMETH_03293 [Clostridium methylpentosum
           DSM 5476]
          Length = 646

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGI 277
           G K  +LG+ N GK+ LFNAL   +   V + PG T  V   +  ++GY  + ++D  GI
Sbjct: 2   GSKYALLGNPNCGKTMLFNALTGSN-QYVGNWPGVT--VERKEGRVKGYKNILLADLPGI 58

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL 303
                   +E I R F+  E  D+I+
Sbjct: 59  YSLSSYSLEEKISRDFILKERPDVII 84


>gi|169794587|ref|YP_001712380.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           baumannii AYE]
 gi|215482176|ref|YP_002324358.1| hypothetical protein ABBFA_000425 [Acinetobacter baumannii
           AB307-0294]
 gi|301345003|ref|ZP_07225744.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           baumannii AB056]
 gi|301512066|ref|ZP_07237303.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           baumannii AB058]
 gi|301596097|ref|ZP_07241105.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           baumannii AB059]
 gi|332853132|ref|ZP_08434569.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           baumannii 6013150]
 gi|332868622|ref|ZP_08438278.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           baumannii 6013113]
 gi|169147514|emb|CAM85375.1| putative GTPase, involved in coordination of cell cycle (EngB)
           [Acinetobacter baumannii AYE]
 gi|213986877|gb|ACJ57176.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294]
 gi|332728801|gb|EGJ60160.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           baumannii 6013150]
 gi|332733299|gb|EGJ64493.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           baumannii 6013113]
          Length = 258

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL--------DLEGY 267
           +GY+I   G SNAGKSS  NAL  +K +A  +  PG T+ +    L        DL GY
Sbjct: 60  SGYEIAFAGRSNAGKSSAINALTNQKQLARASKKPGRTQMINFFSLGNPDQRLVDLPGY 118


>gi|56459917|ref|YP_155198.1| GTPase Era [Idiomarina loihiensis L2TR]
 gi|56178927|gb|AAV81649.1| GTPase Era [Idiomarina loihiensis L2TR]
          Length = 305

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 11/92 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + ++I ++ P TTR  +L +D D +G      DT G+ + 
Sbjct: 16  VAIVGRPNVGKSTLINRLLGQKISITSNKPQTTRHRILGVDTD-DGCQAIYVDTPGMHKQ 74

Query: 281 DDIVEKEGIKRTFLE-----VENADLILLLKE 307
               E   I R   +     +++ DL+L + E
Sbjct: 75  ----EPRAINRVMNQTASSALKDVDLVLFVVE 102


>gi|121996843|ref|YP_001001630.1| GTP-binding protein Era [Halorhodospira halophila SL1]
 gi|121588248|gb|ABM60828.1| GTP-binding protein Era [Halorhodospira halophila SL1]
          Length = 305

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++G  N GKS+L NAL  + V+IVT  P TTR  +   L+     + + DT G+ ++
Sbjct: 20  LVGRPNVGKSTLLNALLGEKVSIVTRKPQTTRHRILGVLNRPDAQMVLVDTPGMHQS 76


>gi|315929278|gb|EFV08492.1| GTP-binding protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 704

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           + I I G  NAGKSSL NAL K+D   V++IP T 
Sbjct: 139 FNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETA 173


>gi|319763707|ref|YP_004127644.1| gtp-binding proten hflx [Alicycliphilus denitrificans BC]
 gi|330824030|ref|YP_004387333.1| GTP-binding proten HflX [Alicycliphilus denitrificans K601]
 gi|317118268|gb|ADV00757.1| GTP-binding proten HflX [Alicycliphilus denitrificans BC]
 gi|329309402|gb|AEB83817.1| GTP-binding proten HflX [Alicycliphilus denitrificans K601]
          Length = 392

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAG- 276
           + I ++G++NAGKS+LFNAL K   A   D    T D  T  L L   +  V +SDT G 
Sbjct: 202 FNISLVGYTNAGKSTLFNALVKAR-AYAADQLFATLDTTTRQLYLGEAVGSVSLSDTVGF 260

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
           IR+    +  +  + T  E  +ADL+L
Sbjct: 261 IRDLPHGL-VDAFQATLQEAVDADLLL 286


>gi|298386290|ref|ZP_06995846.1| ferrous iron transport protein B [Bacteroides sp. 1_1_14]
 gi|298260667|gb|EFI03535.1| ferrous iron transport protein B [Bacteroides sp. 1_1_14]
          Length = 828

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N+GK+SLFN LA      V +  G T D      D EGY  +I D  G
Sbjct: 109 RRTINVALVGNPNSGKTSLFN-LASGAHEHVGNYSGVTVDAKEGYFDFEGYHFRIVDLPG 167

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
                    +E   R  +  E  D+I+
Sbjct: 168 TYSLSAYTPEEIYVRRHIVDETPDVII 194


>gi|262281583|ref|ZP_06059361.1| GTP-binding protein HflX [Acinetobacter calcoaceticus RUH2202]
 gi|262256959|gb|EEY75699.1| GTP-binding protein HflX [Acinetobacter calcoaceticus RUH2202]
          Length = 447

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 8/121 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           + ++G++NAGKS+LFN LAK DV     +  T    L  ++ D  G +V ++DT G +R 
Sbjct: 202 VSLVGYTNAGKSTLFNILAKSDVYAADQLFATLDPTLRRLEWDGIGTVV-LADTVGFVRN 260

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYT 336
              D+V  E  K T  E   A L+L + + NS   +   + ++ +   IG  + +   Y 
Sbjct: 261 LQHDLV--ESFKATLEETLEATLLLHVIDSNSHDMLDQIEAVEGVLKEIGADAPVLRVYN 318

Query: 337 E 337
           +
Sbjct: 319 K 319


>gi|229191828|ref|ZP_04318801.1| hypothetical protein bcere0002_34870 [Bacillus cereus ATCC 10876]
 gi|228591652|gb|EEK49498.1| hypothetical protein bcere0002_34870 [Bacillus cereus ATCC 10876]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|227889893|ref|ZP_04007698.1| GTP-binding protein [Lactobacillus johnsonii ATCC 33200]
 gi|268319576|ref|YP_003293232.1| hypothetical protein FI9785_1101 [Lactobacillus johnsonii FI9785]
 gi|227849337|gb|EEJ59423.1| GTP-binding protein [Lactobacillus johnsonii ATCC 33200]
 gi|262397951|emb|CAX66965.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
          Length = 279

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 26/142 (18%)

Query: 155 SSLYGQWIDKLTHIRSFIEADL-----------------DFSEEEDVQNFSSKEVLNDIL 197
           + + GQ   K  HI    +ADL                 +F    D Q+ ++   L  I+
Sbjct: 42  NPMIGQLTKKKPHIIVLNKADLADPIQTKKWTRYYQDEGNFVISMDAQHTTNMTSLFKII 101

Query: 198 FL--KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L  K      I++G    +IR    + I G  N GKS++ N +  ++ AIV D PG TR
Sbjct: 102 KLAGKEKTDKLIAKGASNPMIR----VAIAGIPNCGKSTIINRMVGRNAAIVGDKPGVTR 157

Query: 256 DVLTIDLDLEGYLVKISDTAGI 277
               +        V+I DT GI
Sbjct: 158 GQSWLKTKTN---VQILDTPGI 176


>gi|225414492|ref|ZP_03761681.1| hypothetical protein CLOSTASPAR_05715 [Clostridium asparagiforme
           DSM 15981]
 gi|225041982|gb|EEG52228.1| hypothetical protein CLOSTASPAR_05715 [Clostridium asparagiforme
           DSM 15981]
          Length = 697

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR G+    +G+ N GK++LFNA     +  V + PG T + +  + + +G  +K+ D  
Sbjct: 38  IRVGF----VGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERVEGETNYKGRPIKVIDLP 92

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303
           GI        +E + R  +E    D+I+
Sbjct: 93  GIYSLTSYTIEEKVTRKCIEDGEVDVII 120


>gi|254173129|ref|ZP_04879802.1| GTP-binding proten HflX [Thermococcus sp. AM4]
 gi|214032538|gb|EEB73367.1| GTP-binding proten HflX [Thermococcus sp. AM4]
          Length = 428

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G++NAGKS+L NALA +  A   D   TT D  T    L    V ++DT G  +  
Sbjct: 188 IALAGYTNAGKSTLLNALAGES-AEARDQMFTTLDTRTRRFKLGRKRVLLTDTVGFIDNL 246

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309
                E    T  E+  AD++LL+ +++
Sbjct: 247 PPFIVEAFHSTLEEIVKADIVLLVLDVS 274


>gi|189235276|ref|XP_973489.2| PREDICTED: similar to mmr1/hsr1 GTP binding protein [Tribolium
            castaneum]
          Length = 1234

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 214  EIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
            E  +NG   I  LG  N GKSSL NA+  K V  V+  PG T+   TI L      V++ 
Sbjct: 984  EKYKNGILTIGCLGQPNVGKSSLINAIMGKKVVSVSRTPGHTKHFQTIFLTPN---VRLC 1040

Query: 273  DTAGI 277
            D  G+
Sbjct: 1041 DCPGL 1045


>gi|163867938|ref|YP_001609142.1| GTP-dependent nucleic acid-binding protein EngD [Bartonella
           tribocorum CIP 105476]
 gi|161017589|emb|CAK01147.1| GTP-binding protein [Bartonella tribocorum CIP 105476]
          Length = 367

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 9/66 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP-----GTTRDVLTIDLDLEGYLVKISD 273
           G+K  I+G  N GKS+LFNAL K   A   + P       T +V   DL +E    KI+ 
Sbjct: 2   GFKCGIVGLPNVGKSTLFNALTKTATAQAANYPFCTIEPNTGEVAVPDLRME----KIAS 57

Query: 274 TAGIRE 279
            AG +E
Sbjct: 58  IAGSKE 63


>gi|89901079|ref|YP_523550.1| small GTP-binding protein domain-containing protein [Rhodoferax
           ferrireducens T118]
 gi|89345816|gb|ABD70019.1| Small GTP-binding protein domain [Rhodoferax ferrireducens T118]
          Length = 382

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTA 275
           + + I ++G++NAGKS+LFNAL K       D    T D  T  L L   G  + +SDT 
Sbjct: 200 DAFNISLVGYTNAGKSTLFNALVKART-YTADQLFATLDTTTRQLYLGEAGRSISLSDTV 258

Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLIL 303
           G IR+    +  +  + T  E  +ADL+L
Sbjct: 259 GFIRDLPHGL-IDAFQATLQEAVDADLLL 286


>gi|51598915|ref|YP_073103.1| GTP-binding protein Era [Borrelia garinii PBi]
 gi|81609837|sp|Q660L0|ERA_BORGA RecName: Full=GTPase Era
 gi|51573486|gb|AAU07511.1| GTP-binding protein [Borrelia garinii PBi]
          Length = 290

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 16/132 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGI---RE 279
           ILG  + GKS+L N++    ++I++ IP TTR+ +  I  D  G ++ I DT G    ++
Sbjct: 8   ILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFI-DTPGFHLSKK 66

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDL 331
             +I   + I  +  EVE   LIL + +I  K         EI     I F+ +  K DL
Sbjct: 67  KFNIAMMKNIHSSIGEVE---LILYIIDIQDKPGEEENKILEIIKNSKIKFLVLLNKVDL 123

Query: 332 YSTYTEEYDHLI 343
            +T  +E    +
Sbjct: 124 KNTKIKEITQFL 135


>gi|52141781|ref|YP_085048.1| GTP-binding protein [Bacillus cereus E33L]
 gi|51975250|gb|AAU16800.1| GTP-binding protein [Bacillus cereus E33L]
          Length = 425

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 198 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 256

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 257 QDLPTSLIAAFRSTLEEAGEADVIL 281


>gi|332304698|ref|YP_004432549.1| GTP-binding proten HflX [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172027|gb|AEE21281.1| GTP-binding proten HflX [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 432

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 9/124 (7%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +     QG+   +      + ++G++NAGKS+LFN + + +V     +  T    L  I+
Sbjct: 181 VQKQREQGRRARVRAEIPTLALVGYTNAGKSTLFNTITQSEVYAADQLFATLDPTLRRIE 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
           L   G  + ++DT G IR    D+V     K T  E + ADL+L + + +  +   F +N
Sbjct: 241 LQDVGPAI-LADTVGFIRHLPHDLV--AAFKATLQETQQADLLLHVVDYSDDQ---FREN 294

Query: 320 IDFI 323
           ID +
Sbjct: 295 IDQV 298


>gi|319953161|ref|YP_004164428.1| gtp-binding protein hflx [Cellulophaga algicola DSM 14237]
 gi|319421821|gb|ADV48930.1| GTP-binding protein HflX [Cellulophaga algicola DSM 14237]
          Length = 403

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 13/112 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDV 257
           D      +G  G ++R    + ++G++N GKS+L N ++K DV     +   +  T R V
Sbjct: 186 DRQMETQRGNRGALVR----VALVGYTNVGKSTLMNVVSKSDVFAENKLFATLDTTVRKV 241

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  +L        +SDT G          E  K T  EV  ADL+L + +I+
Sbjct: 242 VVGNLPF-----LLSDTVGFIRKLPTQLVESFKSTLDEVREADLLLHVVDIS 288


>gi|303234147|ref|ZP_07320793.1| ferrous iron transport protein B [Finegoldia magna BVS033A4]
 gi|302494688|gb|EFL54448.1| ferrous iron transport protein B [Finegoldia magna BVS033A4]
          Length = 709

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 12/88 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VKISDTA 275
           +I + G+ N+GKS++FNAL   +   V + PG T +        EG L     +KI+D  
Sbjct: 4   RIALAGNPNSGKSTMFNALTGSN-QYVGNWPGVTVE------KKEGTLKNNKDIKITDLP 56

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303
           GI        +E + R +L  E  D+I+
Sbjct: 57  GIYSLSPYTLEEVVSRNYLINEKPDVII 84


>gi|295425298|ref|ZP_06818001.1| ribosome biogenesis GTPase YqeH [Lactobacillus amylolyticus DSM
           11664]
 gi|295065074|gb|EFG55979.1| ribosome biogenesis GTPase YqeH [Lactobacillus amylolyticus DSM
           11664]
          Length = 369

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 222 IVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I  +G +N GKS+L NA+       KDV   +  PGTT D + I L+   +L+   DT G
Sbjct: 169 IYFVGMTNVGKSTLINAIIDKMGDIKDVITTSRFPGTTLDRIEIPLENGHHLI---DTPG 225

Query: 277 IRETDDIVEK 286
           I  T+ +  +
Sbjct: 226 IMSTNQLATR 235


>gi|254469962|ref|ZP_05083367.1| GTP-binding proten HflX [Pseudovibrio sp. JE062]
 gi|211961797|gb|EEA96992.1| GTP-binding proten HflX [Pseudovibrio sp. JE062]
          Length = 491

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 31/181 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG-IRE 279
           I  +G++NAGKS+LFN +   +V    D+   T D     L L  G  V +SDT G I E
Sbjct: 240 IAFVGYTNAGKSTLFNRMTNAEV-FAKDLLFATLDPTLRRLKLPHGREVILSDTVGFISE 298

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--KEISFPKNIDFIFIGTKSDLYSTYT 336
              ++V     + T  EV  AD++L +++I  +  K  S   N     +G K        
Sbjct: 299 LPHNLV--AAFRATLEEVIQADIVLHVRDIAHEDTKAQSLDVNETLEMLGLKVSESDRVI 356

Query: 337 EEYDHL-----------------------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           E Y+ +                       +S+ +G+G+ +L+ +I++ L+ +   +   +
Sbjct: 357 EVYNKIDKLDEAHREKLLESNSVDEGPISVSAISGDGIPDLLARIEARLAEQLDTVTMVL 416

Query: 374 P 374
           P
Sbjct: 417 P 417


>gi|331654537|ref|ZP_08355537.1| conserved hypothetical protein [Escherichia coli M718]
 gi|331047919|gb|EGI19996.1| conserved hypothetical protein [Escherichia coli M718]
          Length = 294

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHCVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            + G TR    + L L    + + D  GI ET  
Sbjct: 68  PLNGCTRQAHRLTLQLGERRMTLVDLPGIGETPQ 101


>gi|300788458|ref|YP_003768749.1| GTP-binding protein Era [Amycolatopsis mediterranei U32]
 gi|299797972|gb|ADJ48347.1| GTP-binding protein Era [Amycolatopsis mediterranei U32]
          Length = 303

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   + G  NAGKS+L NAL    VAI +  P TTR  +   +  E   + + DT G
Sbjct: 5   RSGFACFV-GRPNAGKSTLTNALVGTKVAITSSKPQTTRHAIRGIVHREDAQLVLIDTPG 63

Query: 277 I 277
           +
Sbjct: 64  L 64


>gi|262377319|ref|ZP_06070543.1| GTPase EngB [Acinetobacter lwoffii SH145]
 gi|262307772|gb|EEY88911.1| GTPase EngB [Acinetobacter lwoffii SH145]
          Length = 315

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 18/101 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR----------DVLTIDLDLEGY 267
           GY+I   G SNAGKSS  NAL  +K +A  +  PG T+          D   +DL   GY
Sbjct: 62  GYEIAFAGRSNAGKSSAINALTNQKQLARASKKPGRTQMINFFSLGNPDQRLVDLPGYGY 121

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
                  A + E   +V ++ ++   +  ++   ++LL +I
Sbjct: 122 -------AAVPEKMKLVWQKELENYLIHRQSLQGLVLLMDI 155


>gi|228916336|ref|ZP_04079906.1| hypothetical protein bthur0012_35520 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228928753|ref|ZP_04091788.1| hypothetical protein bthur0010_34460 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935004|ref|ZP_04097835.1| hypothetical protein bthur0009_34580 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228947368|ref|ZP_04109660.1| hypothetical protein bthur0007_34970 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229092733|ref|ZP_04223878.1| hypothetical protein bcere0021_34900 [Bacillus cereus Rock3-42]
 gi|229123221|ref|ZP_04252426.1| hypothetical protein bcere0016_35100 [Bacillus cereus 95/8201]
 gi|254683587|ref|ZP_05147447.1| GTP-binding protein (hflX) [Bacillus anthracis str. CNEVA-9066]
 gi|254739560|ref|ZP_05197255.1| GTP-binding protein (hflX) [Bacillus anthracis str. Kruger B]
 gi|301055197|ref|YP_003793408.1| GTP-binding protein [Bacillus anthracis CI]
 gi|228660236|gb|EEL15871.1| hypothetical protein bcere0016_35100 [Bacillus cereus 95/8201]
 gi|228690659|gb|EEL44437.1| hypothetical protein bcere0021_34900 [Bacillus cereus Rock3-42]
 gi|228812309|gb|EEM58638.1| hypothetical protein bthur0007_34970 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228824904|gb|EEM70705.1| hypothetical protein bthur0009_34580 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830908|gb|EEM76510.1| hypothetical protein bthur0010_34460 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228843534|gb|EEM88612.1| hypothetical protein bthur0012_35520 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300377366|gb|ADK06270.1| GTP-binding protein [Bacillus cereus biovar anthracis str. CI]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|206978301|ref|ZP_03239178.1| GTP-binding protein [Bacillus cereus H3081.97]
 gi|217961131|ref|YP_002339699.1| GTP-binding protein [Bacillus cereus AH187]
 gi|206743505|gb|EDZ54935.1| GTP-binding protein [Bacillus cereus H3081.97]
 gi|217063572|gb|ACJ77822.1| GTP-binding protein [Bacillus cereus AH187]
          Length = 425

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 198 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 256

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 257 QDLPTSLIAAFRSTLEEAGEADVIL 281


>gi|78187214|ref|YP_375257.1| GTP-binding protein HflX [Chlorobium luteolum DSM 273]
 gi|78167116|gb|ABB24214.1| GTP-binding protein HflX [Chlorobium luteolum DSM 273]
          Length = 435

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTA 275
           R+  ++ ++G++NAGKS+L N L     A   D    T D  T  L+L+   LV +SDT 
Sbjct: 200 RSVPRVALVGYTNAGKSTLMNQLCPDAGAYAEDRLFATLDTRTRRLELKINKLVLLSDTV 259

Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLIL 303
           G IR+    +  E  + T  EV  AD +L
Sbjct: 260 GFIRKLPHTL-VESFRSTLDEVLQADFLL 287


>gi|115468206|ref|NP_001057702.1| Os06g0498900 [Oryza sativa Japonica Group]
 gi|52076484|dbj|BAD45363.1| putative GTPase [Oryza sativa Japonica Group]
 gi|113595742|dbj|BAF19616.1| Os06g0498900 [Oryza sativa Japonica Group]
 gi|125555454|gb|EAZ01060.1| hypothetical protein OsI_23088 [Oryza sativa Indica Group]
 gi|215686793|dbj|BAG89643.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222635637|gb|EEE65769.1| hypothetical protein OsJ_21450 [Oryza sativa Japonica Group]
          Length = 681

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTD-----IPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + ++G  NAGKS+L NA AKK    +T      +PGTT  +L I   L     K+ DT G
Sbjct: 410 VWVIGAQNAGKSTLINAFAKKQGVKITRLTEAAVPGTTLGILRITGVLPAK-AKMYDTPG 468

Query: 277 I 277
           +
Sbjct: 469 L 469


>gi|21282918|ref|NP_646006.1| hypothetical protein MW1189 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486145|ref|YP_043366.1| hypothetical protein SAS1239 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208047|ref|ZP_06924478.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912130|ref|ZP_07129573.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|21204357|dbj|BAB95054.1| MW1189 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244588|emb|CAG43017.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887290|gb|EFH26192.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886376|gb|EFK81578.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 412

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 206 FQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 289


>gi|25153277|ref|NP_495984.2| RAB family member (rab-39) [Caenorhabditis elegans]
 gi|19571635|emb|CAA87774.2| C. elegans protein D2013.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 229

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 35/182 (19%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKI 271
           G +    Y+++++G S  GKSSL     +  +A ++D P    D     ++L  GY VK+
Sbjct: 11  GPLFHYQYRLIVIGDSTVGKSSLLRYFTEGKMAEISD-PTVGVDFYARMIELRPGYRVKL 69

Query: 272 S--DTAGIRETDDIVEKE-----GI--------KRTFLEVENADLILLLKEINSKKEISF 316
              DTAG  +   I +       G+        + +F  VEN      +KE         
Sbjct: 70  QLWDTAGQEKFRSITKSYYRNSVGVLAIYDTTNRESFEHVEN-----WVKEAALNLGGPS 124

Query: 317 PKNIDFIFIGTKSDLYST---------YTEEYDHL----ISSFTGEGLEELINKIKSILS 363
           P    F  +GTKSD+ S          Y  +Y  +     SS TG+ + E  + I   + 
Sbjct: 125 PSKCVFQLVGTKSDMDSQRQVNYEEGEYFAKYHKMKFIETSSRTGDNVNEAFHMIAQEIQ 184

Query: 364 NK 365
           N+
Sbjct: 185 NR 186


>gi|332304400|ref|YP_004432251.1| ribosome biogenesis GTP-binding protein YsxC [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332171729|gb|AEE20983.1| ribosome biogenesis GTP-binding protein YsxC [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 206

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           G ++   G SNAGKSS  N L + K +A  +  PG T+ +   DLD E  LV +
Sbjct: 24  GIEVAFAGRSNAGKSSALNRLTRQKSLARTSKTPGRTQLINVFDLDEERRLVDL 77


>gi|307208357|gb|EFN85760.1| Guanine nucleotide-binding protein-like 3-like protein
           [Harpegnathos saltator]
          Length = 557

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++   ++ I+G  N GKSS+ N+L +     V + PG T+ +  + LD +   +K+ D+ 
Sbjct: 258 VKTSIRVGIVGLPNIGKSSVINSLKRSKACNVGNTPGITKTMQAVQLDSK---IKLLDSP 314

Query: 276 GI 277
           GI
Sbjct: 315 GI 316


>gi|303231481|ref|ZP_07318211.1| GTP-binding protein Era [Veillonella atypica ACS-049-V-Sch6]
 gi|302513824|gb|EFL55836.1| GTP-binding protein Era [Veillonella atypica ACS-049-V-Sch6]
          Length = 299

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKI 271
            E  ++G+ + ++G  N GKS++ NAL    +AIV+D   TTR+ ++ +  D E  +V  
Sbjct: 4   AEHFKSGF-VAVVGRPNVGKSTMINALIGDKIAIVSDKAQTTRNRIICVYTDEEKQIV-F 61

Query: 272 SDTAGIRE 279
            DT G+ +
Sbjct: 62  MDTPGVHK 69


>gi|300812180|ref|ZP_07092622.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|313123894|ref|YP_004034153.1| GTP-binding protein era-like protein [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|300496816|gb|EFK31896.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|312280457|gb|ADQ61176.1| GTP-binding protein era-like protein [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|325686031|gb|EGD28089.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 301

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 45/84 (53%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + VAI +  P TTR+ ++     +   V   DT GI ++ 
Sbjct: 12  VALVGRPNVGKSTLMNRLIGQKVAITSAKPQTTRNKISGIYTEDDMQVVFVDTPGIFKSH 71

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++   K +   +++ DL++ +
Sbjct: 72  SDLDEYMDKASLSSLKDVDLVMFM 95


>gi|295100047|emb|CBK89136.1| Predicted GTPase [Eubacterium cylindroides T2-87]
          Length = 446

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 20/173 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           +I ++G +  GKSSL NAL    VA V+D    T      +  D +  L++I DT GI E
Sbjct: 65  RIFLIGRTGVGKSSLINALCGAYVAGVSDTKSCTEGAQIYECKDGDRVLMEILDTRGIAE 124

Query: 280 TDDIVEKEGIKRTFLEVEN---ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           ++ + +K   +   +E  N    D+ + +     + ++    N D  F+   S  Y+   
Sbjct: 125 SESLDDKVTAEEMLIEQINEFSPDVAIFMLNCTHRDDV----NTDVEFLKKVSKEYAKVN 180

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           +    ++          +INK   +  ++FK  P   P +K  +  +++ V+Y
Sbjct: 181 KLQLPIVV---------VINKCDEMAPSRFKN-PVEYPENK--INKINEVVQY 221


>gi|290793111|gb|ADD63989.1| nitric oxide synthase-associated protein I [Solanum tuberosum]
          Length = 561

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 15/74 (20%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-------------AKKDVAIVTDIPGTTRDVLTIDLD 263
           + G  + ILG +N GKS+  NAL             A+K   I + +PGTT   + ID  
Sbjct: 275 KKGRDVYILGSANVGKSAFINALLNTMPYKDPVAASARKYKPIQSAVPGTTLGPIPIDAF 334

Query: 264 LEGYLVKISDTAGI 277
           L G   K+ DT G+
Sbjct: 335 LGGE--KLYDTPGV 346


>gi|283955115|ref|ZP_06372617.1| LOW QUALITY PROTEIN: GTP-binding protein [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793328|gb|EFC32095.1| LOW QUALITY PROTEIN: GTP-binding protein [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 713

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           + I I G  NAGKSSL NAL K+D   V++IP T 
Sbjct: 148 FNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETA 182


>gi|253733457|ref|ZP_04867622.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728511|gb|EES97240.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
          Length = 412

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 206 FQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 289


>gi|229157282|ref|ZP_04285362.1| hypothetical protein bcere0010_34660 [Bacillus cereus ATCC 4342]
 gi|228626346|gb|EEK83093.1| hypothetical protein bcere0010_34660 [Bacillus cereus ATCC 4342]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|227535176|ref|ZP_03965225.1| GTPase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187221|gb|EEI67288.1| GTPase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 198

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 201 NDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVL 258
           +D+   IS     +   +G+ +I  LG SN GKSSL N L  +K +A  + +PG T+ + 
Sbjct: 4   HDVKLTISAVAAAQYPEDGHPEIAFLGRSNVGKSSLINKLIQRKAMARTSGVPGKTQTLN 63

Query: 259 TIDL-------DLEGY-LVKISDTA 275
             DL       D+ GY   K+S TA
Sbjct: 64  FYDLDSRLFFVDVPGYGYAKVSKTA 88


>gi|225865681|ref|YP_002751059.1| GTP-binding protein [Bacillus cereus 03BB102]
 gi|225786196|gb|ACO26413.1| GTP-binding protein [Bacillus cereus 03BB102]
          Length = 425

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 198 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 256

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 257 QDLPTSLIAAFRSTLEEAGEADVIL 281


>gi|154332089|ref|XP_001561861.1| GTPase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 640

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G+ N GKSSL N L +K V  V  IPG T+    + L    +L+        RE+++ 
Sbjct: 323 VIGYPNVGKSSLINTLRRKSVCKVAPIPGETKVWQYVALTRSIFLIDCPGVVYDRESNND 382

Query: 284 VE 285
           V+
Sbjct: 383 VQ 384


>gi|21674206|ref|NP_662271.1| GTP-binding protein HflX [Chlorobium tepidum TLS]
 gi|21647370|gb|AAM72613.1| GTP-binding protein HflX [Chlorobium tepidum TLS]
          Length = 441

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG-IR 278
           ++ ++G++NAGKS+L NAL  +  A   +    T D  T  L+L+   LV +SDT G IR
Sbjct: 203 RVALVGYTNAGKSTLMNALCPEAGAYAENRLFATLDTKTRRLELKINKLVLLSDTVGFIR 262

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +    +  E  K T  EV  AD +L
Sbjct: 263 KLPHTL-VESFKSTLDEVLQADFLL 286


>gi|49475911|ref|YP_033952.1| translation-associated GTPase [Bartonella henselae str. Houston-1]
 gi|49238719|emb|CAF27971.1| GTP-binding protein [Bartonella henselae str. Houston-1]
          Length = 367

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 9/66 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP-----GTTRDVLTIDLDLEGYLVKISD 273
           G+K  I+G  N GKS+LFNAL K   A   + P       T +V   DL +E    KI+ 
Sbjct: 2   GFKCGIVGLPNVGKSTLFNALTKTATAQAANYPFCTIEPNTGEVAVPDLRME----KIAS 57

Query: 274 TAGIRE 279
            AG +E
Sbjct: 58  IAGSKE 63


>gi|152967328|ref|YP_001363112.1| GTP-binding protein Era [Kineococcus radiotolerans SRS30216]
 gi|151361845|gb|ABS04848.1| GTP-binding protein Era [Kineococcus radiotolerans SRS30216]
          Length = 308

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           R+G+  ++ G  NAGKS+L NAL  + VAI +  P TTR
Sbjct: 13  RSGFACLV-GRPNAGKSTLTNALVGQKVAITSSRPQTTR 50


>gi|15924297|ref|NP_371831.1| GTP-binding protein proteinase modulator YnbA [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15926889|ref|NP_374422.1| hypothetical protein SA1147 [Staphylococcus aureus subsp. aureus
           N315]
 gi|57650297|ref|YP_186181.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160925|ref|YP_493895.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195015|ref|YP_499815.1| hypothetical protein SAOUHSC_01283 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150393854|ref|YP_001316529.1| GTP-binding protein HSR1-related [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979627|ref|YP_001441886.1| hypothetical protein SAHV_1296 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509471|ref|YP_001575130.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142539|ref|ZP_03567032.1| GTP-binding protein [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253316443|ref|ZP_04839656.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255006092|ref|ZP_05144693.2| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795639|ref|ZP_05644618.1| GTP-binding protein HflX [Staphylococcus aureus A9781]
 gi|258416042|ref|ZP_05682310.1| GTP-binding protein [Staphylococcus aureus A9763]
 gi|258420442|ref|ZP_05683384.1| GTP-binding protein HflX [Staphylococcus aureus A9719]
 gi|258434781|ref|ZP_05688855.1| GTP-binding proteinase modulator YnbA [Staphylococcus aureus A9299]
 gi|258444643|ref|ZP_05692972.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258447524|ref|ZP_05695668.1| GTP-binding protein [Staphylococcus aureus A6300]
 gi|258449366|ref|ZP_05697469.1| GTP-binding proteinase modulator YnbA [Staphylococcus aureus A6224]
 gi|258452605|ref|ZP_05700611.1| GTP-binding proteinase modulator YnbA [Staphylococcus aureus A5948]
 gi|258454745|ref|ZP_05702709.1| GTP-binding protein HflX [Staphylococcus aureus A5937]
 gi|262048188|ref|ZP_06021075.1| hypothetical protein SAD30_1964 [Staphylococcus aureus D30]
 gi|262051364|ref|ZP_06023587.1| hypothetical protein SA930_2086 [Staphylococcus aureus 930918-3]
 gi|269202922|ref|YP_003282191.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892793|ref|ZP_06301028.1| GTP-binding protein HflX [Staphylococcus aureus A8117]
 gi|282920550|ref|ZP_06328271.1| GTP-binding protein HflX [Staphylococcus aureus A9765]
 gi|282927647|ref|ZP_06335263.1| GTP-binding protein HflX [Staphylococcus aureus A10102]
 gi|296274863|ref|ZP_06857370.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
           MR1]
 gi|304381129|ref|ZP_07363782.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13701106|dbj|BAB42401.1| SA1147 [Staphylococcus aureus subsp. aureus N315]
 gi|14247077|dbj|BAB57469.1| similar to GTP-binding protein proteinase modulator YnbA
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|57284483|gb|AAW36577.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
           COL]
 gi|87126899|gb|ABD21413.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202573|gb|ABD30383.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|149946306|gb|ABR52242.1| GTP-binding protein HSR1-related [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721762|dbj|BAF78179.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368280|gb|ABX29251.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257789611|gb|EEV27951.1| GTP-binding protein HflX [Staphylococcus aureus A9781]
 gi|257839190|gb|EEV63666.1| GTP-binding protein [Staphylococcus aureus A9763]
 gi|257843390|gb|EEV67797.1| GTP-binding protein HflX [Staphylococcus aureus A9719]
 gi|257849142|gb|EEV73124.1| GTP-binding proteinase modulator YnbA [Staphylococcus aureus A9299]
 gi|257850136|gb|EEV74089.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257853715|gb|EEV76674.1| GTP-binding protein [Staphylococcus aureus A6300]
 gi|257857354|gb|EEV80252.1| GTP-binding proteinase modulator YnbA [Staphylococcus aureus A6224]
 gi|257859823|gb|EEV82665.1| GTP-binding proteinase modulator YnbA [Staphylococcus aureus A5948]
 gi|257863128|gb|EEV85892.1| GTP-binding protein HflX [Staphylococcus aureus A5937]
 gi|259160739|gb|EEW45760.1| hypothetical protein SA930_2086 [Staphylococcus aureus 930918-3]
 gi|259163754|gb|EEW48309.1| hypothetical protein SAD30_1964 [Staphylococcus aureus D30]
 gi|262075212|gb|ACY11185.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940796|emb|CBI49178.1| GTPase [Staphylococcus aureus subsp. aureus TW20]
 gi|282590650|gb|EFB95727.1| GTP-binding protein HflX [Staphylococcus aureus A10102]
 gi|282594212|gb|EFB99199.1| GTP-binding protein HflX [Staphylococcus aureus A9765]
 gi|282764790|gb|EFC04915.1| GTP-binding protein HflX [Staphylococcus aureus A8117]
 gi|302751127|gb|ADL65304.1| GTPase HflX [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340112|gb|EFM06053.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312829701|emb|CBX34543.1| GTP-binding proten HflX [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315131099|gb|EFT87083.1| GTP-binding protein [Staphylococcus aureus subsp. aureus CGS03]
 gi|315198547|gb|EFU28876.1| GTP-binding protein [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140877|gb|EFW32724.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143856|gb|EFW35628.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313976|gb|AEB88389.1| GTP-binding protein HSR1-related [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727567|gb|EGG64023.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           21172]
 gi|329727861|gb|EGG64312.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           21189]
          Length = 412

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 206 FQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 289


>gi|307299162|ref|ZP_07578963.1| GTP-binding protein Era [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914958|gb|EFN45344.1| GTP-binding protein Era [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 300

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G  N GKS+L N +  + +AIV+D P TTR+ +   L  +   +   DT GI
Sbjct: 8   VALVGKPNVGKSTLINTIIGEKIAIVSDKPQTTRNRIGGILTTKKGQIVFYDTPGI 63


>gi|303228934|ref|ZP_07315744.1| GTP-binding protein Era [Veillonella atypica ACS-134-V-Col7a]
 gi|302516348|gb|EFL58280.1| GTP-binding protein Era [Veillonella atypica ACS-134-V-Col7a]
          Length = 299

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKI 271
            E  ++G+ + ++G  N GKS++ NAL    +AIV+D   TTR+ ++ +  D E  +V  
Sbjct: 4   AEHFKSGF-VAVVGRPNVGKSTMINALIGDKIAIVSDKAQTTRNRIICVYTDEEKQIV-F 61

Query: 272 SDTAGIRE 279
            DT G+ +
Sbjct: 62  MDTPGVHK 69


>gi|292670223|ref|ZP_06603649.1| ribosome biogenesis GTP-binding protein YsxC [Selenomonas noxia
           ATCC 43541]
 gi|292648175|gb|EFF66147.1| ribosome biogenesis GTP-binding protein YsxC [Selenomonas noxia
           ATCC 43541]
          Length = 202

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 20/129 (15%)

Query: 222 IVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDV------LTIDLDLEGYLVKISDT 274
           +  +G SN GKSSL N+L + + +A V+  PG T+ +      L ID   E Y V + D 
Sbjct: 25  VAFIGRSNVGKSSLINSLTRIRQLARVSSKPGKTQTINFYELLLRIDGGAERYSVHLVDL 84

Query: 275 AGIRETDDIVEKEGIKRTFLE---VENADL--ILLLKEI------NSKKEISF--PKNID 321
            G        +   +   F+E   +  A+L  + LL +I      + ++  S+    NI 
Sbjct: 85  PGYGYAKAARDSRKVWAKFIEEYLLYAAELRFVCLLLDIRHTPMESDRRMFSWLVEHNIP 144

Query: 322 FIFIGTKSD 330
            + I TKSD
Sbjct: 145 VLVIATKSD 153


>gi|300780720|ref|ZP_07090574.1| GTP-binding protein Era [Corynebacterium genitalium ATCC 33030]
 gi|300532427|gb|EFK53488.1| GTP-binding protein Era [Corynebacterium genitalium ATCC 33030]
          Length = 350

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI+ D P TTR  +   ++     + + D
Sbjct: 45  EGFRSGF-VSFVGRPNTGKSTLTNALVGEKIAIMADQPETTRHPIRGIVNRPDAQIVLVD 103

Query: 274 TAGIRETDDIVEK---EGIKRTFLEVENADLILLLKE 307
           T G+     ++ +   + +K TF +V+   L +   E
Sbjct: 104 TPGLHRPRTLLGERLNDVVKDTFADVDVVGLTVPANE 140


>gi|240850143|ref|YP_002971536.1| translation-associated GTPase [Bartonella grahamii as4aup]
 gi|240267266|gb|ACS50854.1| translation-associated GTPase [Bartonella grahamii as4aup]
          Length = 367

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 9/66 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP-----GTTRDVLTIDLDLEGYLVKISD 273
           G+K  I+G  N GKS+LFNAL K   A   + P       T +V   DL +E    KI+ 
Sbjct: 2   GFKCGIVGLPNVGKSTLFNALTKTATAQAANYPFCTIEPNTGEVAVPDLRME----KIAS 57

Query: 274 TAGIRE 279
            AG +E
Sbjct: 58  IAGSKE 63


>gi|229197814|ref|ZP_04324531.1| hypothetical protein bcere0001_33500 [Bacillus cereus m1293]
 gi|228585664|gb|EEK43765.1| hypothetical protein bcere0001_33500 [Bacillus cereus m1293]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|226291608|gb|EEH47036.1| nucleolar GTP-binding protein [Paracoccidioides brasiliensis Pb18]
          Length = 558

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 20/169 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 322 RKQISVGFIGYPNTGKSSIINTLRKKKVCSVAPIPGETKVWQYITLMKRIYLI---DCPG 378

Query: 277 -IRETDDIVEKEGIKRTFLEVENAD-----LILLLKEINSKKEISFPKNIDFIFIGTKSD 330
            +  ++   E++ + R  + VEN +     +  +LK +  +    F +  +        D
Sbjct: 379 VVPPSNSDTEEDILLRGVVRVENVENPEQYIPAVLKRVQPR---HFERTYEVKNYKDAID 435

Query: 331 LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF--KKLP-FSIPSH 376
           L S    +   L+      G E  ++ +  ++ N F   K+P +S P H
Sbjct: 436 LLSILARKGGRLL-----RGGEPDVDGVAKMIINDFLRGKIPWYSSPPH 479


>gi|169824910|ref|YP_001692521.1| ferrous iron transport protein B [Finegoldia magna ATCC 29328]
 gi|167831715|dbj|BAG08631.1| ferrous iron transport protein B [Finegoldia magna ATCC 29328]
          Length = 709

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 12/88 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VKISDTA 275
           +I + G+ N+GKS++FNAL   +   V + PG T +        EG L     +KI+D  
Sbjct: 4   RIALAGNPNSGKSTMFNALTGSN-QYVGNWPGVTVE------KKEGTLKNNKDIKITDLP 56

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303
           GI        +E + R +L  E  D+I+
Sbjct: 57  GIYSLSPYTLEEVVSRNYLINEKPDVII 84


>gi|116630032|ref|YP_815204.1| GTP-binding protein YqeH [Lactobacillus gasseri ATCC 33323]
 gi|311110338|ref|ZP_07711735.1| ribosome biogenesis GTPase YqeH [Lactobacillus gasseri MV-22]
 gi|116095614|gb|ABJ60766.1| Predicted GTPase [Lactobacillus gasseri ATCC 33323]
 gi|311065492|gb|EFQ45832.1| ribosome biogenesis GTPase YqeH [Lactobacillus gasseri MV-22]
          Length = 369

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 222 IVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I  +G +N GKS+L NA+       KDV   +  PGTT D + I L    YL+   DT G
Sbjct: 169 IYFVGTTNVGKSTLINAIINMNSDLKDVITTSKFPGTTLDEIKIPLSNGHYLI---DTPG 225

Query: 277 IRETDDIV 284
           I   + + 
Sbjct: 226 ILNANQLA 233


>gi|332880831|ref|ZP_08448502.1| GTP-binding protein HflX [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332681214|gb|EGJ54140.1| GTP-binding protein HflX [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 419

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 22/128 (17%)

Query: 192 VLNDILFLKN-----DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-- 244
           +LN +  LK      D      +   G +IR    + ++G++N GKS+L N L+K DV  
Sbjct: 187 ILNRMSLLKQRLAEIDRQKTTQRSNRGRMIR----VALVGYTNVGKSTLMNLLSKSDVFA 242

Query: 245 --AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300
              +   +  T R V+  +L    +L  +SDT G IR+   D+V  +  K T  EV  AD
Sbjct: 243 ENKLFATLDTTVRKVIIDNL---PFL--LSDTVGFIRKLPTDLV--DSFKSTLDEVREAD 295

Query: 301 LILLLKEI 308
           L+L + +I
Sbjct: 296 LLLHVVDI 303


>gi|317125259|ref|YP_004099371.1| GTP-binding protein Era [Intrasporangium calvum DSM 43043]
 gi|315589347|gb|ADU48644.1| GTP-binding protein Era [Intrasporangium calvum DSM 43043]
          Length = 322

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 34/202 (16%)

Query: 218 NGYKI---VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +GY+     ++G  NAGKS+L NAL  + VAI +  P TTR  +          + + DT
Sbjct: 21  SGYRAGFACLVGRPNAGKSTLTNALVGQKVAITSSKPQTTRHTIRGVATTSTAQLILVDT 80

Query: 275 AGIRETDDIVEK---EGIKRTFLEVENADLILLLKE---------INSKKEISFPKNIDF 322
            G+ +   ++ +   + ++ T LEV+     L   +             +E+   +    
Sbjct: 81  PGLHKPRTLLGERLNDLVRETLLEVDVVGFCLPADQRIGPGDAFIARELEELRSVRRRPV 140

Query: 323 IFIGTKSDLYSTYTEEY--DHLI--------------SSFTGEGLEELINKIKSILSNKF 366
           + I TK+D   T   E   +HLI              S+ +G+ +EE+ + + S L    
Sbjct: 141 VAIATKAD---TVDRERLAEHLITIDRLGDWEAIIPCSAVSGDQVEEVRDVLASYLPESP 197

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
           +  P  + + +     +++ VR
Sbjct: 198 QLYPDGVLTDEPEAIMIAELVR 219


>gi|311031591|ref|ZP_07709681.1| GTP-binding protein YqeH [Bacillus sp. m3-13]
          Length = 367

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R+G  + ++G +N GKS+  N +      ++DV   +  PGTT D++ I LD    L   
Sbjct: 158 RDGKDVYVVGCTNVGKSTFINRIIREFSGEEDVITTSQFPGTTLDMIDIPLDNGASLF-- 215

Query: 272 SDTAGI 277
            DT GI
Sbjct: 216 -DTPGI 220


>gi|302332911|gb|ADL23104.1| GTPase HflX [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 412

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 206 FQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 289


>gi|284922953|emb|CBG36045.1| putative ATP/GTP-binding protein [Escherichia coli 042]
          Length = 294

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 83/199 (41%), Gaps = 15/199 (7%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHGVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTFLEVENADLILLLK 306
            + G TR    + L +    + + D  GI ET   D   +E  ++   E++    IL   
Sbjct: 68  PLNGCTRQAHRLTLQIGERRMTLVDLPGIGETPQHDQEYRELYRQLLPELDLIIWILRAD 127

Query: 307 EINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEY---DHLISSFTGEGLEELI 355
           E     +I+  + +         F+F+ + +D      EE+   +   S      L  + 
Sbjct: 128 ERAYAADIAMHQFLLNEGADPSRFLFVLSHADRVFP-AEEWNATEKCPSRHQELSLATVT 186

Query: 356 NKIKSILSNKFKKLPFSIP 374
             + ++  + F  LP ++P
Sbjct: 187 AWVATLFPSSFPVLPVAVP 205


>gi|239944771|ref|ZP_04696708.1| putative ATP/GTP-binding protein [Streptomyces roseosporus NRRL
           15998]
 gi|239991235|ref|ZP_04711899.1| putative ATP/GTP-binding protein [Streptomyces roseosporus NRRL
           11379]
 gi|291448234|ref|ZP_06587624.1| ATP/GTP-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|291351181|gb|EFE78085.1| ATP/GTP-binding protein [Streptomyces roseosporus NRRL 15998]
          Length = 506

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 21/173 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I G++NAGKSSL N L    V +   +  T    +       G +  ++DT G +R  
Sbjct: 287 VAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRAETPSGRIYTLADTVGFVRHL 346

Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI---SFPKNIDFIFIGTK 328
              +  E  + T  EV  +DLIL +         +++ + +E+       N+  I +  K
Sbjct: 347 PHHL-VEAFRSTMEEVGESDLILHVVDGSHPVPEEQLAAVREVIRDVGAVNVREIVVINK 405

Query: 329 SDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +D             E+Y   +S+ TGEG++EL+  I + L     ++   +P
Sbjct: 406 ADAADPLVLQRLLRNEKYAITVSARTGEGIDELLALIDAELPRPSVEIEVLVP 458


>gi|229071202|ref|ZP_04204427.1| hypothetical protein bcere0025_33760 [Bacillus cereus F65185]
 gi|228711943|gb|EEL63893.1| hypothetical protein bcere0025_33760 [Bacillus cereus F65185]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|194246477|ref|YP_002004116.1| hypothetical protein ATP_00076 [Candidatus Phytoplasma mali]
 gi|193806834|emb|CAP18263.1| conserved hypothetical protein [Candidatus Phytoplasma mali]
          Length = 289

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  K++++G  N GKS+L N L  + V    +IPG T++   ++      + K+ DT G+
Sbjct: 114 NPLKMMVVGIPNVGKSTLINKLINRKVVKTANIPGLTKNFQWLNYK---NVFKLLDTPGV 170

Query: 278 RETDDIVEKEGI 289
                  EK G+
Sbjct: 171 LWHQFTEEKTGM 182


>gi|148244359|ref|YP_001219053.1| ribosome biogenesis GTP-binding protein YsxC [Candidatus
           Vesicomyosocius okutanii HA]
 gi|166232161|sp|A5CXJ4|ENGB_VESOH RecName: Full=Probable GTP-binding protein EngB
 gi|146326186|dbj|BAF61329.1| GTP-binding protein [Candidatus Vesicomyosocius okutanii HA]
          Length = 199

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 9/77 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL-------DLEGY-L 268
            GY+++  G SNAGKS   N L  +  +A V+  PG T+ ++  +L       DL GY  
Sbjct: 24  QGYEVIFAGRSNAGKSRAINTLTLQNKLAKVSRTPGRTQHLVFFELDKDRRLADLPGYGY 83

Query: 269 VKISDTAGIRETDDIVE 285
            K+ +   ++   D+ E
Sbjct: 84  AKVPEHIKVKWYKDMNE 100


>gi|148926502|ref|ZP_01810185.1| putative ATP /GTP binding protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145844665|gb|EDK21771.1| putative ATP /GTP binding protein [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 689

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           + I I G  NAGKSSL NAL K+D   V++IP T 
Sbjct: 163 FNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETA 197


>gi|146324516|ref|XP_751180.2| GTP binding protein (EngB) [Aspergillus fumigatus Af293]
 gi|129557285|gb|EAL89142.2| GTP binding protein (EngB), putative [Aspergillus fumigatus Af293]
          Length = 321

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-------------IDLDLEGY 267
           ++  LG SN GKSSL NA+  K++   +  PG TR++               + LD+ GY
Sbjct: 98  EVAFLGRSNVGKSSLLNAIMGKEMCWTSSKPGRTREMNAFGIGGTKGGESKIVLLDMPGY 157

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
                   GI     +  +  ++R F+ +++
Sbjct: 158 GKGSRTEWGIEILKYLQGRRQLRRAFILIDS 188


>gi|30021804|ref|NP_833435.1| GTP-binding protein hflX [Bacillus cereus ATCC 14579]
 gi|29897360|gb|AAP10636.1| GTP-binding protein hflX [Bacillus cereus ATCC 14579]
          Length = 425

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 198 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 256

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 257 QDLPTSLIAAFRSTLEEAGEADVIL 281


>gi|56964050|ref|YP_175781.1| GTPase [Bacillus clausii KSM-K16]
 gi|56910293|dbj|BAD64820.1| GTPase [Bacillus clausii KSM-K16]
          Length = 288

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +ILG  N GKS+L N L  K  A V D PG T+    I +  E   +++ DT GI
Sbjct: 123 RAIILGIPNVGKSTLINRLVNKRQAKVGDRPGVTKQQQWIKVKQE---LELLDTPGI 176


>gi|86151331|ref|ZP_01069546.1| GTP-binding protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85841678|gb|EAQ58925.1| GTP-binding protein [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 619

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           + I I G  NAGKSSL NAL K+D   V++IP T 
Sbjct: 163 FNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETA 197


>gi|330446942|ref|ZP_08310593.1| GTP-binding protein Era [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491133|dbj|GAA05090.1| GTP-binding protein Era [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 301

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  ++ +D   +GY     DT G+   
Sbjct: 10  IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDT-RDGYQAVYVDTPGLH-- 66

Query: 281 DDIVEKEGIKR 291
             I EK  I R
Sbjct: 67  --IEEKRTINR 75


>gi|322819320|gb|EFZ26480.1| GTPase protein, putative [Trypanosoma cruzi]
          Length = 507

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + ++G+ N GKSS+ NAL +K V  V ++PG T     ++L  +   +++ D  G+    
Sbjct: 261 VGVIGYPNVGKSSIINALKQKHVVGVGNMPGFTTGNTEVELRSD---IRVMDCPGVVSPG 317

Query: 278 RETDDIVEKEGIK 290
            ++ D+V +  +K
Sbjct: 318 EDSGDVVLRNAVK 330


>gi|294848301|ref|ZP_06789048.1| GTP-binding protein HflX [Staphylococcus aureus A9754]
 gi|295406243|ref|ZP_06816050.1| GTP-binding protein HflX [Staphylococcus aureus A8819]
 gi|297244471|ref|ZP_06928354.1| GTP-binding protein HflX [Staphylococcus aureus A8796]
 gi|294825101|gb|EFG41523.1| GTP-binding protein HflX [Staphylococcus aureus A9754]
 gi|294968831|gb|EFG44853.1| GTP-binding protein HflX [Staphylococcus aureus A8819]
 gi|297178501|gb|EFH37747.1| GTP-binding protein HflX [Staphylococcus aureus A8796]
          Length = 415

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 209 FQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 263

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 264 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 292


>gi|284024299|ref|ZP_06378697.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
           132]
          Length = 412

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 206 FQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 289


>gi|239928120|ref|ZP_04685073.1| ribosome-associated GTPase [Streptomyces ghanaensis ATCC 14672]
 gi|291436452|ref|ZP_06575842.1| ribosome-associated GTPase [Streptomyces ghanaensis ATCC 14672]
 gi|291339347|gb|EFE66303.1| ribosome-associated GTPase [Streptomyces ghanaensis ATCC 14672]
          Length = 369

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVA---IVTDIPGTTRDVLTID--LDLEGYLVKISD 273
           G   V+LG S AGKS+L NAL  +DV     V D+ G  R   T    L L G  V I D
Sbjct: 204 GGTSVLLGQSGAGKSTLANALLGEDVMDVRAVRDVDGKGRHTTTTRNLLALPGGGVLI-D 262

Query: 274 TAGIRETDDIVEKEGIKRTFLEVE 297
           T G+R         G+ + F E+E
Sbjct: 263 TPGLRGVGLWDAGTGVGQVFSEIE 286


>gi|229179982|ref|ZP_04307327.1| hypothetical protein bcere0005_33280 [Bacillus cereus 172560W]
 gi|228603516|gb|EEK60992.1| hypothetical protein bcere0005_33280 [Bacillus cereus 172560W]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|227530476|ref|ZP_03960525.1| GTP-binding protein YqeH [Lactobacillus vaginalis ATCC 49540]
 gi|227349581|gb|EEJ39872.1| GTP-binding protein YqeH [Lactobacillus vaginalis ATCC 49540]
          Length = 375

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAI-----VTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  +  +G +N GKS+L N + K+   I      +  PGTT D + I LD +G+  ++
Sbjct: 168 RQGRDVYFVGVTNVGKSTLVNQIIKRQTGIKELITTSKFPGTTLDKIEIPLD-DGH--QL 224

Query: 272 SDTAGI 277
            DT GI
Sbjct: 225 IDTPGI 230


>gi|257425359|ref|ZP_05601784.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428020|ref|ZP_05604418.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430653|ref|ZP_05607035.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433413|ref|ZP_05609771.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436255|ref|ZP_05612302.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus M876]
 gi|282903860|ref|ZP_06311748.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus C160]
 gi|282905623|ref|ZP_06313478.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908599|ref|ZP_06316429.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910877|ref|ZP_06318680.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914082|ref|ZP_06321869.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus M899]
 gi|282919004|ref|ZP_06326739.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus C427]
 gi|282924127|ref|ZP_06331803.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus C101]
 gi|283958048|ref|ZP_06375499.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501114|ref|ZP_06666965.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510076|ref|ZP_06668784.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus M809]
 gi|293526662|ref|ZP_06671347.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           M1015]
 gi|297591250|ref|ZP_06949888.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus MN8]
 gi|257271816|gb|EEV03954.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274861|gb|EEV06348.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278781|gb|EEV09400.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281506|gb|EEV11643.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284537|gb|EEV14657.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus M876]
 gi|282314099|gb|EFB44491.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus C101]
 gi|282316814|gb|EFB47188.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus C427]
 gi|282322150|gb|EFB52474.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus M899]
 gi|282325482|gb|EFB55791.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327661|gb|EFB57944.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330915|gb|EFB60429.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595478|gb|EFC00442.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus C160]
 gi|283790197|gb|EFC29014.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920734|gb|EFD97797.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096119|gb|EFE26380.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467020|gb|EFF09538.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus M809]
 gi|297576136|gb|EFH94852.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus MN8]
 gi|312438311|gb|ADQ77382.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315194192|gb|EFU24585.1| hypothetical protein CGSSa00_05813 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 412

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 206 FQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 289


>gi|153808576|ref|ZP_01961244.1| hypothetical protein BACCAC_02872 [Bacteroides caccae ATCC 43185]
 gi|149128898|gb|EDM20115.1| hypothetical protein BACCAC_02872 [Bacteroides caccae ATCC 43185]
          Length = 828

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N+GK+SLFN LA      V +  G T D      D EGY  +I D  G
Sbjct: 109 RRTINVALVGNPNSGKTSLFN-LASGAHEHVGNYSGVTVDAKEGHFDFEGYHFRIVDLPG 167

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
                    +E   R  +  E  D+I+
Sbjct: 168 TYSLSAYTPEEIYVRRHIIDETPDVII 194


>gi|24380165|ref|NP_722120.1| GTP-binding protein YqeH [Streptococcus mutans UA159]
 gi|24378167|gb|AAN59426.1|AE015007_13 putative GTP-binding protein [Streptococcus mutans UA159]
          Length = 368

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E +R G  + ++G +N GKS+L NA+ +     K++   +  PGTT + + I L+   Y 
Sbjct: 158 EELRQGRDVYVVGVTNVGKSTLINAIIQEITGDKNIITTSRFPGTTLNKIEIPLNDGSY- 216

Query: 269 VKISDTAGI 277
             I DT GI
Sbjct: 217 --IFDTPGI 223


>gi|71667957|ref|XP_820923.1| GTPase protein [Trypanosoma cruzi strain CL Brener]
 gi|70886286|gb|EAN99072.1| GTPase protein, putative [Trypanosoma cruzi]
          Length = 507

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + ++G+ N GKSS+ NAL +K V  V ++PG T     ++L  +   +++ D  G+    
Sbjct: 261 VGVIGYPNVGKSSIINALKQKHVVGVGNMPGFTTGNTEVELRSD---IRVMDCPGVVSPG 317

Query: 278 RETDDIVEKEGIK 290
            ++ D+V +  +K
Sbjct: 318 EDSGDVVLRNAVK 330


>gi|285816987|gb|ADC37474.1| GTP-binding protein HflX [Staphylococcus aureus 04-02981]
          Length = 412

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 206 FQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 289


>gi|282916565|ref|ZP_06324323.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus D139]
 gi|283770369|ref|ZP_06343261.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus H19]
 gi|282319052|gb|EFB49404.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus D139]
 gi|283460516|gb|EFC07606.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus H19]
          Length = 412

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 206 FQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 289


>gi|228959916|ref|ZP_04121582.1| hypothetical protein bthur0005_33880 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228799768|gb|EEM46719.1| hypothetical protein bthur0005_33880 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|229185934|ref|ZP_04313106.1| hypothetical protein bcere0004_34820 [Bacillus cereus BGSC 6E1]
 gi|228597538|gb|EEK55186.1| hypothetical protein bcere0004_34820 [Bacillus cereus BGSC 6E1]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|297587296|ref|ZP_06945941.1| FeoB family ferrous iron (Fe2+) uptake protein [Finegoldia magna
           ATCC 53516]
 gi|297575277|gb|EFH93996.1| FeoB family ferrous iron (Fe2+) uptake protein [Finegoldia magna
           ATCC 53516]
          Length = 709

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 12/88 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VKISDTA 275
           +I + G+ N+GKS++FNAL   +   V + PG T +        EG L     +KI+D  
Sbjct: 4   RIALAGNPNSGKSTMFNALTGSN-QYVGNWPGVTVE------KKEGTLKNNKDIKITDLP 56

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303
           GI        +E + R +L  E  D+I+
Sbjct: 57  GIYSLSPYTLEEVVSRNYLINEKPDVII 84


>gi|224543253|ref|ZP_03683792.1| hypothetical protein CATMIT_02453 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523786|gb|EEF92891.1| hypothetical protein CATMIT_02453 [Catenibacterium mitsuokai DSM
           15897]
          Length = 362

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 26/179 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R+G  + ++G +N GKS+  N + K      ++   ++ PGTT D++ I LD    L   
Sbjct: 157 RHGRDVYVVGITNVGKSTFINRMLKNYSDTTNLITTSEFPGTTLDLIKIPLDDHSSLY-- 214

Query: 272 SDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFIFIG 326
            DT GI    +   IV+++ +     + E   +     ++NS + I F     ID+   G
Sbjct: 215 -DTPGILNEHQYTSIVDEKDLAYIMPQGEVRPMSF---QLNSDQSIFFSGFARIDYT-KG 269

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL-------SNKFKKLPFSIPSHKR 378
            K +    ++      I     E  +EL N+ K +          + K   F++P  KR
Sbjct: 270 NKGNFICYFSRNMQ--IHRTKTEKADELFNRHKQLQVYGPASSMKEMKAYEFTLPEEKR 326


>gi|169350422|ref|ZP_02867360.1| hypothetical protein CLOSPI_01190 [Clostridium spiroforme DSM 1552]
 gi|169292742|gb|EDS74875.1| hypothetical protein CLOSPI_01190 [Clostridium spiroforme DSM 1552]
          Length = 288

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 7/61 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAG 276
             + +ILG  N GKS+  N LAK+   +  + PG T+   ++ +D D E +     DT G
Sbjct: 122 AMRAMILGIPNVGKSTFINRLAKRKATVTGNRPGVTKAQQIIRVDKDFELF-----DTPG 176

Query: 277 I 277
           +
Sbjct: 177 V 177


>gi|169632344|ref|YP_001706080.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           baumannii SDF]
 gi|260557020|ref|ZP_05829237.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           baumannii ATCC 19606]
 gi|169151136|emb|CAO99805.1| putative GTPase, involved in coordination of cell cycle (EngB)
           [Acinetobacter baumannii]
 gi|193078482|gb|ABO13484.2| putative cell cycle coordination GTPase (EngB) [Acinetobacter
           baumannii ATCC 17978]
 gi|260409626|gb|EEX02927.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           baumannii ATCC 19606]
          Length = 258

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL--------DLEGY 267
           +GY+I   G SNAGKSS  NAL  +K +A  +  PG T+ +    L        DL GY
Sbjct: 60  SGYEIAFAGRSNAGKSSAINALTNQKQLARASKKPGRTQMINFFSLGNPDQRLVDLPGY 118


>gi|119500744|ref|XP_001267129.1| nucleolar GTPase, putative [Neosartorya fischeri NRRL 181]
 gi|119415294|gb|EAW25232.1| nucleolar GTPase, putative [Neosartorya fischeri NRRL 181]
          Length = 560

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GKSS+ N L KK V  V  IPG T+    + L    YL+       
Sbjct: 326 RKQISVGLIGYPNTGKSSIINTLRKKKVCNVAPIPGETKVWQYVTLMKRIYLIDCPGVVP 385

Query: 277 IRETDDIVEKEGIKRTFLEVEN 298
             + D   E++ + R  + +EN
Sbjct: 386 PNQND--TEQDILLRGVVRIEN 405


>gi|21428328|gb|AAM49824.1| AT23067p [Drosophila melanogaster]
          Length = 581

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L +    +V   PG T+ +  ++LD +   +K+ D  
Sbjct: 264 IKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKSMQEVELDSK---IKLIDCP 320

Query: 276 GI 277
           GI
Sbjct: 321 GI 322


>gi|68536185|ref|YP_250890.1| putative GTP-binding protein [Corynebacterium jeikeium K411]
 gi|68263784|emb|CAI37272.1| putative GTP-binding protein [Corynebacterium jeikeium K411]
          Length = 484

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           +I I G++NAGKSSL NAL    V +V D    T D  T   +L +G  V  SDT G   
Sbjct: 261 QIAIAGYTNAGKSSLINALTGAGV-LVEDALFATLDPTTRRANLADGRAVVFSDTVGFVR 319

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E  + T  EV  AD++L
Sbjct: 320 HLPTQLVEAFRSTLEEVLAADVVL 343


>gi|28572990|ref|NP_732199.2| nucleostemin 1 [Drosophila melanogaster]
 gi|62510652|sp|Q8MT06|GNL3_DROME RecName: Full=Guanine nucleotide-binding protein-like 3 homolog;
           AltName: Full=Nucleostemin 1; AltName: Full=Nucleostemin
           homolog
 gi|28381326|gb|AAF55384.3| nucleostemin 1 [Drosophila melanogaster]
 gi|212287978|gb|ACJ23464.1| FI08004p [Drosophila melanogaster]
          Length = 581

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L +    +V   PG T+ +  ++LD +   +K+ D  
Sbjct: 264 IKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKSMQEVELDSK---IKLIDCP 320

Query: 276 GI 277
           GI
Sbjct: 321 GI 322


>gi|116494828|ref|YP_806562.1| ribosome biogenesis GTP-binding protein YsxC [Lactobacillus casei
           ATCC 334]
 gi|191638335|ref|YP_001987501.1| ribosome biogenesis GTP-binding protein YsxC [Lactobacillus casei
           BL23]
 gi|239631580|ref|ZP_04674611.1| GTPase EngB [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066389|ref|YP_003788412.1| putative GTPase [Lactobacillus casei str. Zhang]
 gi|122263754|sp|Q039K2|ENGB_LACC3 RecName: Full=Probable GTP-binding protein EngB
 gi|238693035|sp|B3WE42|ENGB_LACCB RecName: Full=Probable GTP-binding protein EngB
 gi|116104978|gb|ABJ70120.1| Predicted GTPase [Lactobacillus casei ATCC 334]
 gi|190712637|emb|CAQ66643.1| Probable GTP-binding protein engB [Lactobacillus casei BL23]
 gi|239526045|gb|EEQ65046.1| GTPase EngB [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300438796|gb|ADK18562.1| Predicted GTPase [Lactobacillus casei str. Zhang]
 gi|327382363|gb|AEA53839.1| Ribosome biogenesis GTP-binding protein YsxC [Lactobacillus casei
           LC2W]
 gi|327385563|gb|AEA57037.1| Ribosome biogenesis GTP-binding protein YsxC [Lactobacillus casei
           BD-II]
          Length = 198

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 201 NDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVL 258
           +D+   IS     +   +G+ +I  LG SN GKSSL N L  +K +A  + +PG T+ + 
Sbjct: 4   HDVKLTISAVAAAQYPEDGHPEIAFLGRSNVGKSSLINKLIQRKAMARTSGVPGKTQTLN 63

Query: 259 TIDL-------DLEGY-LVKISDTA 275
             DL       D+ GY   K+S TA
Sbjct: 64  FYDLDSRLFFVDVPGYGYAKVSKTA 88


>gi|47570717|ref|ZP_00241305.1| GTPase of unknown function [Bacillus cereus G9241]
 gi|47552615|gb|EAL11078.1| GTPase of unknown function [Bacillus cereus G9241]
          Length = 225

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAKK++A   D PG T     I +  E  L+   DT GI
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELL---DTPGI 175


>gi|152967875|ref|YP_001363659.1| GTPase EngC [Kineococcus radiotolerans SRS30216]
 gi|151362392|gb|ABS05395.1| GTPase EngC [Kineococcus radiotolerans SRS30216]
          Length = 357

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKD---VAIVTDIPGTTRDVLTID--LDLEGYLVKISDTAG 276
           +V++G S AGKS+L NAL  +D   V  V    G  R        + + G LV + DT G
Sbjct: 202 VVLIGSSGAGKSTLANALLGQDRFAVGAVRSADGKGRHTTVTRELVPVPGGLVLV-DTPG 260

Query: 277 IRETDDIVEKEGIKRTFLEVEN 298
           +R        EG++RTF +VE+
Sbjct: 261 LRSLGVSELGEGLERTFADVED 282


>gi|186686358|ref|YP_001869554.1| small GTP-binding protein [Nostoc punctiforme PCC 73102]
 gi|186468810|gb|ACC84611.1| small GTP-binding protein [Nostoc punctiforme PCC 73102]
          Length = 517

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 91/211 (43%), Gaps = 18/211 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK--ISDT 274
           R   ++V+ G  +AGK+SL NA+  + V  V    GTT+   T  L L+G   K  I+DT
Sbjct: 129 RGEIQVVVFGTGSAGKTSLVNAIMGRMVGQVDAPMGTTQVGETYCLRLKGLERKILITDT 188

Query: 275 AGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLY- 332
            GI E      E+E + R       ADL+L + + N  +   +        IG +S L  
Sbjct: 189 PGILEAGVAGTEREQMAREL--ATEADLLLFVVD-NDLRRSEYEPLRGLAEIGKRSLLVL 245

Query: 333 ---STYTEEYDHLISSFTGEGLEELI--NKIKSILSNKFKKLPFSIPSHKRHLYHLS-QT 386
                YT+E    I +   + +   I  N + +I +N     P S        Y      
Sbjct: 246 NKTDLYTDEDKESILARLRQRVRGFIATNDVVAIAAN-----PQSAQLETGETYQPEPDI 300

Query: 387 VRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           V  L   +   +  G D++A+N+ L S+ LG
Sbjct: 301 VPLLRRTAAVLRAEGEDLVADNILLQSLRLG 331


>gi|330892520|gb|EGH25181.1| hypothetical protein PSYMO_28526 [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 446

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  LV + DT G+
Sbjct: 11  KLAVVGHTNVGKTSLLRTLT-GDVSFGKVSHRPSTTRHVEGARLSVDGQALVDLYDTPGL 69


>gi|319649390|ref|ZP_08003548.1| GTP-binding protein HflX [Bacillus sp. 2_A_57_CT2]
 gi|317399024|gb|EFV79704.1| GTP-binding protein HflX [Bacillus sp. 2_A_57_CT2]
          Length = 418

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
            ++I ++G++NAGKS++FN L++ +      +  T  D +T  L L  G++  ++DT G 
Sbjct: 198 AFQIALVGYTNAGKSTIFNRLSEAESYEENQLFATL-DPMTRKLILPSGFITLVTDTVGF 256

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL 303
            +          + T  EV  ADL+L
Sbjct: 257 IQDLPTTLIAAFRSTLEEVNEADLLL 282


>gi|229047385|ref|ZP_04192982.1| hypothetical protein bcere0027_33720 [Bacillus cereus AH676]
 gi|229128982|ref|ZP_04257956.1| hypothetical protein bcere0015_34260 [Bacillus cereus BDRD-Cer4]
 gi|229146275|ref|ZP_04274649.1| hypothetical protein bcere0012_34200 [Bacillus cereus BDRD-ST24]
 gi|296504211|ref|YP_003665911.1| GTP-binding protein hflX [Bacillus thuringiensis BMB171]
 gi|228637194|gb|EEK93650.1| hypothetical protein bcere0012_34200 [Bacillus cereus BDRD-ST24]
 gi|228654480|gb|EEL10344.1| hypothetical protein bcere0015_34260 [Bacillus cereus BDRD-Cer4]
 gi|228723970|gb|EEL75318.1| hypothetical protein bcere0027_33720 [Bacillus cereus AH676]
 gi|296325263|gb|ADH08191.1| GTP-binding protein hflX [Bacillus thuringiensis BMB171]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|89075087|ref|ZP_01161528.1| GTP-binding protein Era [Photobacterium sp. SKA34]
 gi|90580326|ref|ZP_01236133.1| GTP-binding protein Era [Vibrio angustum S14]
 gi|89049174|gb|EAR54739.1| GTP-binding protein Era [Photobacterium sp. SKA34]
 gi|90438628|gb|EAS63812.1| GTP-binding protein Era [Vibrio angustum S14]
          Length = 301

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  ++ +D   +GY     DT G+   
Sbjct: 10  IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTR-DGYQAVYVDTPGLH-- 66

Query: 281 DDIVEKEGIKR 291
             I EK  I R
Sbjct: 67  --IEEKRTINR 75


>gi|70994168|ref|XP_751931.1| nucleolar GTPase [Aspergillus fumigatus Af293]
 gi|66849565|gb|EAL89893.1| nucleolar GTPase, putative [Aspergillus fumigatus Af293]
 gi|159125154|gb|EDP50271.1| nucleolar GTPase, putative [Aspergillus fumigatus A1163]
          Length = 560

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GKSS+ N L KK V  V  IPG T+    + L    YL+       
Sbjct: 326 RKQISVGLIGYPNTGKSSIINTLRKKKVCNVAPIPGETKVWQYVTLMKRIYLIDCPGVVP 385

Query: 277 IRETDDIVEKEGIKRTFLEVEN 298
             + D   E++ + R  + +EN
Sbjct: 386 PNQND--TEQDILLRGVVRIEN 405


>gi|329940692|ref|ZP_08289973.1| ATP GTP-binding protein [Streptomyces griseoaurantiacus M045]
 gi|329300753|gb|EGG44650.1| ATP GTP-binding protein [Streptomyces griseoaurantiacus M045]
          Length = 370

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV---TDIPGTTRDVLTID--LDLEG 266
           LG  +  G   V+LG S AGKS+L NAL  ++V  V    D+ G  R   T    L L G
Sbjct: 199 LGAAVTGGTS-VLLGQSGAGKSTLANALIGEEVMRVHATRDVDGKGRHTTTTRNLLALPG 257

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
             V I DT G+R       + G+ + F E+E
Sbjct: 258 GGVLI-DTPGLRGVGLWDAETGVGQVFAEIE 287


>gi|326923267|ref|XP_003207860.1| PREDICTED: mitochondrial GTPase 1-like [Meleagris gallopavo]
          Length = 343

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 220 YKIVILGHSNAGKSSLFNA-----LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           Y I+++G  N GKSSL N+     L K     V   PG T+ VLT     E  LV + DT
Sbjct: 167 YSIMVIGVPNVGKSSLINSLRRLHLKKGKATAVGGEPGVTKAVLTRIQVCETPLVYLVDT 226

Query: 275 AGI 277
            G+
Sbjct: 227 PGV 229


>gi|307706044|ref|ZP_07642865.1| GTP-binding proten HflX [Streptococcus mitis SK564]
 gi|307620402|gb|EFN99517.1| GTP-binding proten HflX [Streptococcus mitis SK564]
          Length = 412

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNTLTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIIKDLDMEDIPRLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E L    + KIK I  +   ++PFS  S+K H
Sbjct: 318 NKADLVKDFTPTQTPYALISAKSEDSRENLQALFLEKIKDIFESFTLRVPFS-KSYKIH 375


>gi|302379555|ref|ZP_07268040.1| ferrous iron transport protein B [Finegoldia magna ACS-171-V-Col3]
 gi|302312462|gb|EFK94458.1| ferrous iron transport protein B [Finegoldia magna ACS-171-V-Col3]
          Length = 709

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 12/88 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VKISDTA 275
           +I + G+ N+GKS++FNAL   +   V + PG T +        EG L     +KI+D  
Sbjct: 4   RIALAGNPNSGKSTMFNALTGSN-QYVGNWPGVTVE------KKEGTLKNNKDIKITDLP 56

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303
           GI        +E + R +L  E  D+I+
Sbjct: 57  GIYSLSPYTLEEVVSRNYLINEKPDVII 84


>gi|260578882|ref|ZP_05846787.1| GTP-binding protein [Corynebacterium jeikeium ATCC 43734]
 gi|258602972|gb|EEW16244.1| GTP-binding protein [Corynebacterium jeikeium ATCC 43734]
          Length = 484

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           +I I G++NAGKSSL NAL    V +V D    T D  T   +L +G  V  SDT G   
Sbjct: 261 QIAIAGYTNAGKSSLINALTGAGV-LVEDALFATLDPTTRRANLADGRAVVFSDTVGFVR 319

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E  + T  EV  AD++L
Sbjct: 320 HLPTQLVEAFRSTLEEVLAADVVL 343


>gi|253731925|ref|ZP_04866090.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724335|gb|EES93064.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 412

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 206 FQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 289


>gi|305681126|ref|ZP_07403933.1| GTP-binding protein HflX [Corynebacterium matruchotii ATCC 14266]
 gi|305659331|gb|EFM48831.1| GTP-binding protein HflX [Corynebacterium matruchotii ATCC 14266]
          Length = 559

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           +I I G++NAGKSSL NA+    V +V D    T D  T   +L +G  V  +DT G   
Sbjct: 332 QIAIAGYTNAGKSSLINAITGAGV-LVEDALFATLDPTTRRAELADGRTVVFTDTVGFVR 390

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E  + T  EV  ADL+L
Sbjct: 391 HLPTQLVEAFRSTLEEVVGADLVL 414


>gi|239831858|ref|ZP_04680187.1| GTP-binding proten HflX [Ochrobactrum intermedium LMG 3301]
 gi|239824125|gb|EEQ95693.1| GTP-binding proten HflX [Ochrobactrum intermedium LMG 3301]
          Length = 472

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 6/173 (3%)

Query: 159 GQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIR 217
           G+ +   TH+              + Q  + + +L D IL +K ++ + +    L    R
Sbjct: 168 GRLVRSWTHLERQRGGGGFLGGPGETQIEADRRLLQDKILKIKRELETVVRTRTLHRQKR 227

Query: 218 NGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISD 273
                  + ++G++NAGKS+LFN +   +V +  D+   T D     + L  G  V +SD
Sbjct: 228 RKVPHPIVALVGYTNAGKSTLFNRMTGAEV-LAEDMLFATLDPTLRRIRLPHGETVILSD 286

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
           T G             + T  EV  ADLIL +++I+     +  ++++ I  G
Sbjct: 287 TVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVESILAG 339


>gi|229827515|ref|ZP_04453584.1| hypothetical protein GCWU000182_02904 [Abiotrophia defectiva ATCC
           49176]
 gi|229788453|gb|EEP24567.1| hypothetical protein GCWU000182_02904 [Abiotrophia defectiva ATCC
           49176]
          Length = 305

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 18/95 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + +AI +  P TTR+ + T+  D  G ++ + DT GI + 
Sbjct: 9   VTLIGRPNVGKSTLMNNLIGQKIAITSSKPQTTRNRIQTVYTDETGQIIFL-DTPGIHKA 67

Query: 281 --------DDIVEKEGIKRTFLEVENADLILLLKE 307
                   D + E     RT  EV   D++L L E
Sbjct: 68  QNKLGEYMDSVAE-----RTLSEV---DVVLWLVE 94


>gi|221195789|ref|ZP_03568842.1| ribosome biogenesis GTP-binding protein YsxC [Atopobium rimae ATCC
           49626]
 gi|221184263|gb|EEE16657.1| ribosome biogenesis GTP-binding protein YsxC [Atopobium rimae ATCC
           49626]
          Length = 194

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 33/168 (19%)

Query: 221 KIVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTRDVLTID------LDLEGY-LVKIS 272
           ++  +G SN GKSSL N  L +K +A V+ +PG T ++   D      +DL GY   K+S
Sbjct: 27  EVSFVGRSNVGKSSLLNRLLGRKQLARVSSVPGKTANINFFDVDGVKFVDLPGYGYAKVS 86

Query: 273 DTAGIRETDDIVEKEGIKRTF------LEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
                R  D I      +R+F      +++ +    L L+ ++   E   P    F+   
Sbjct: 87  HIEKQRWADLIGGYFEQERSFNLVISLVDIRHEAQKLDLQMVDFLTEAELP----FVVAL 142

Query: 327 TKSD-------------LYSTYTEEYDHLI--SSFTGEGLEELINKIK 359
           TK+D             L S++    + +I  SS TG G++EL  +I+
Sbjct: 143 TKADKITRNKQNQAAAALRSSFGLAQEQIIITSSETGLGIDELRRRIE 190


>gi|195570227|ref|XP_002103110.1| GD20254 [Drosophila simulans]
 gi|194199037|gb|EDX12613.1| GD20254 [Drosophila simulans]
          Length = 328

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L +    +V   PG T+ +  ++LD +   +K+ D  
Sbjct: 11  IKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKSMQEVELDSK---IKLIDCP 67

Query: 276 GI 277
           GI
Sbjct: 68  GI 69


>gi|149192068|ref|ZP_01870293.1| GTP-binding protein Era [Vibrio shilonii AK1]
 gi|148834093|gb|EDL51105.1| GTP-binding protein Era [Vibrio shilonii AK1]
          Length = 329

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N +  + ++I +  P TTR  ++ +D D + Y     DT G+   
Sbjct: 35  VAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRIMGVDTDGD-YQAIYVDTPGLH-- 91

Query: 281 DDIVEKEGIKRTFLEVENADL 301
             I EK  I R      N+ L
Sbjct: 92  --IEEKRAINRLMNRAANSSL 110


>gi|115495785|ref|NP_001069666.1| ras-related and estrogen-regulated growth inhibitor [Bos taurus]
 gi|149713789|ref|XP_001501854.1| PREDICTED: similar to RAS-like, estrogen-regulated, growth
           inhibitor [Equus caballus]
 gi|122142415|sp|Q0VCJ7|RERG_BOVIN RecName: Full=Ras-related and estrogen-regulated growth inhibitor
 gi|111305136|gb|AAI20135.1| RAS-like, estrogen-regulated, growth inhibitor [Bos taurus]
 gi|296487276|gb|DAA29389.1| ras-related and estrogen-regulated growth inhibitor [Bos taurus]
          Length = 199

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 31/154 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           K+ I G +  GKS+L      K      D  +  T R   TID ++    ++I DTAG  
Sbjct: 8   KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEV--VTMEILDTAG-- 63

Query: 279 ETDDIVEKEGIKRT---FLEVENA------DLILLLKEINSKKEISFPKNIDFIFIGTKS 329
             +D +++EG  R    F+ V +       + +L LK I    EI  PKN+  I +G K+
Sbjct: 64  -QEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILD--EIKKPKNVTLILVGNKA 120

Query: 330 DL---YSTYTEEYDHL----------ISSFTGEG 350
           DL       TEE + L           S+ TGEG
Sbjct: 121 DLDHSRQVSTEEGEKLATELACAFYECSACTGEG 154


>gi|54112164|gb|AAV28767.1| 163.m06369p [Cryptococcus gattii]
          Length = 718

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  GI
Sbjct: 329 VGFIGYPNTGKSSIINTLKKKKVCTVAPIPGETKVWQYITLMRRIYLI---DCPGI 381


>gi|321262665|ref|XP_003196051.1| hypothetical Protein CGB_I1220W [Cryptococcus gattii WM276]
 gi|54112199|gb|AAV28801.1| 163.m06369p [Cryptococcus gattii]
 gi|317462526|gb|ADV24264.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 718

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  GI
Sbjct: 329 VGFIGYPNTGKSSIINTLKKKKVCTVAPIPGETKVWQYITLMRRIYLI---DCPGI 381


>gi|49483469|ref|YP_040693.1| hypothetical protein SAR1281 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49241598|emb|CAG40284.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 412

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 206 FQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 289


>gi|325916037|ref|ZP_08178327.1| GTP-binding proten HflX [Xanthomonas vesicatoria ATCC 35937]
 gi|325537713|gb|EGD09419.1| GTP-binding proten HflX [Xanthomonas vesicatoria ATCC 35937]
          Length = 439

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G++NAGKS+LFNAL   + A V D    T D     + L G    ++DT G    
Sbjct: 200 RIALVGYTNAGKSTLFNALTGAE-AYVADQLFATLDPTVRRIALPGGSAILADTVGF--V 256

Query: 281 DDIVEK--EGIKRTFLEVENADLIL 303
            D+  +     + T  E  +ADL+L
Sbjct: 257 RDLPHQLVAAFRSTLSEARDADLLL 281


>gi|305662547|ref|YP_003858835.1| GTP-binding proten HflX [Ignisphaera aggregans DSM 17230]
 gi|304377116|gb|ADM26955.1| GTP-binding proten HflX [Ignisphaera aggregans DSM 17230]
          Length = 359

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G++NAGK++LFN L+  D    T++  T    ++  L + G    + DT G      +
Sbjct: 189 IVGYTNAGKTTLFNVLSNLDKPTGTEMFTTLSTKIS-TLKICGKTFALIDTVGFIRKIPV 247

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKE 313
              E  K    E+  +DLILL+ +I+  +E
Sbjct: 248 TIIESFKAVLEEISYSDLILLVVDISKDEE 277


>gi|296210885|ref|XP_002752248.1| PREDICTED: ras-related and estrogen-regulated growth inhibitor-like
           [Callithrix jacchus]
          Length = 199

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 31/154 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           K+ I G +  GKS+L      K      D  +  T R   TID ++    ++I DTAG  
Sbjct: 8   KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVS--MEILDTAG-- 63

Query: 279 ETDDIVEKEGIKRT---FLEVENA------DLILLLKEINSKKEISFPKNIDFIFIGTKS 329
             +D V++EG  R    F+ V +       + +L LK I    EI  PKN+  I +G K+
Sbjct: 64  -QEDAVQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILD--EIKKPKNVTLILVGNKA 120

Query: 330 DL---YSTYTEEYDHL----------ISSFTGEG 350
           DL       TEE + L           S+ TGEG
Sbjct: 121 DLDHSRQVSTEEGEKLATELACAFYECSACTGEG 154


>gi|255262598|ref|ZP_05341940.1| ribosome biogenesis GTP-binding protein YsxC [Thalassiobium sp.
           R2A62]
 gi|255104933|gb|EET47607.1| ribosome biogenesis GTP-binding protein YsxC [Thalassiobium sp.
           R2A62]
          Length = 217

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++   G SN GKS+L NAL  +K +A  ++ PG T+++    +   GYLV +        
Sbjct: 47  EVCFAGRSNVGKSTLINALTGRKGLARASNTPGRTQEINYFTMGEHGYLVDLPGYGFANA 106

Query: 280 TDDIVEK 286
              +VEK
Sbjct: 107 PLTVVEK 113


>gi|297206002|ref|ZP_06923397.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
           jensenii JV-V16]
 gi|297149128|gb|EFH29426.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
           jensenii JV-V16]
          Length = 280

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 13/62 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VKISDTA 275
           +I ++G  N GKS++ N L  ++VAIV D PG T+         + +L     V+I DT 
Sbjct: 122 RICLVGIPNCGKSTIINRLVGRNVAIVGDRPGVTKR--------QSWLKTSESVQILDTP 173

Query: 276 GI 277
           GI
Sbjct: 174 GI 175


>gi|238855691|ref|ZP_04645988.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
           jensenii 269-3]
 gi|260664446|ref|ZP_05865298.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
           jensenii SJ-7A-US]
 gi|282932205|ref|ZP_06337652.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
           jensenii 208-1]
 gi|313472153|ref|ZP_07812645.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
           jensenii 1153]
 gi|238831676|gb|EEQ24016.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
           jensenii 269-3]
 gi|239529525|gb|EEQ68526.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
           jensenii 1153]
 gi|260561511|gb|EEX27483.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
           jensenii SJ-7A-US]
 gi|281303655|gb|EFA95810.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
           jensenii 208-1]
          Length = 280

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 13/62 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VKISDTA 275
           +I ++G  N GKS++ N L  ++VAIV D PG T+         + +L     V+I DT 
Sbjct: 122 RICLVGIPNCGKSTIINRLVGRNVAIVGDRPGVTKG--------QSWLKTSESVQILDTP 173

Query: 276 GI 277
           GI
Sbjct: 174 GI 175


>gi|197103855|ref|YP_002129232.1| GTP-binding protein CgpA [Phenylobacterium zucineum HLK1]
 gi|196477275|gb|ACG76803.1| GTP-binding protein CgpA [Phenylobacterium zucineum HLK1]
          Length = 213

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++   G SN GKSSL NA+  +KD+A  ++ PG TR+V     D +  LV +      R 
Sbjct: 41  EVAFAGRSNVGKSSLINAVTGRKDLARASNEPGRTREVNFFVADEKLRLVDLPGYGWARA 100

Query: 280 TDDIVEK-EGIKRTFLE 295
           +  +  K + + R +L 
Sbjct: 101 SKSVARKFQNLGRDYLR 117


>gi|329912353|ref|ZP_08275734.1| GTP-binding protein Era [Oxalobacteraceae bacterium IMCC9480]
 gi|327545640|gb|EGF30798.1| GTP-binding protein Era [Oxalobacteraceae bacterium IMCC9480]
          Length = 300

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 2/105 (1%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +++  L    R GY I I+G  N GKS+L NAL    V+I +    TTR  +T    +E 
Sbjct: 1   MTESALNPNFRCGY-IAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQTVED 59

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLE-VENADLILLLKEINS 310
                 DT G +        + + +T    + +AD+IL L E  +
Sbjct: 60  TQFIYVDTPGFQTKHANALNKTLNKTVANTLTSADVILFLIEAGT 104


>gi|310828251|ref|YP_003960608.1| GTP-binding protein [Eubacterium limosum KIST612]
 gi|308739985|gb|ADO37645.1| GTP-binding protein [Eubacterium limosum KIST612]
          Length = 603

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 19/91 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG---IR 278
           + ++G++N+GKS+LFN L + D  I        +D L I LD    + K+   AG   + 
Sbjct: 381 VSLIGYTNSGKSTLFNVLTESDAVI--------KDGLFITLD--STIRKVRPEAGDYLVS 430

Query: 279 ETDDIVEK------EGIKRTFLEVENADLIL 303
           +T   +EK      +  K T  EVE ADL+L
Sbjct: 431 DTVGFIEKLPHELIKAFKTTLKEVETADLLL 461


>gi|304312505|ref|YP_003812103.1| hypothetical protein HDN1F_28770 [gamma proteobacterium HdN1]
 gi|301798238|emb|CBL46460.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 469

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 14/109 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIR 278
           K V++GH+N GK+SL   L +      V+D P TTR V    L + G     + DT G+ 
Sbjct: 6   KFVVVGHTNVGKTSLLRTLLRDSKFGEVSDRPSTTRHVEGATLTVGGEQFATLFDTPGLE 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT 327
           +   +++       +LE    DL  + ++ +  + I  P  ++ +F+G+
Sbjct: 66  DASALLD-------YLE----DLERIERQKHPNQRIDAPARLE-LFLGS 102


>gi|293376925|ref|ZP_06623142.1| GTP-binding protein HflX [Turicibacter sanguinis PC909]
 gi|292644471|gb|EFF62564.1| GTP-binding protein HflX [Turicibacter sanguinis PC909]
          Length = 422

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 26/189 (13%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           RN   +V L G++NAGKS+  NAL K   + + D     +++L   L+     +++ D  
Sbjct: 192 RNATPVVALVGYTNAGKSTTMNALLKISNSQL-DKVVFEKNMLFATLETSTRQIQLPDNK 250

Query: 276 GIRETDDI--VEK------EGIKRTFLEVENADLILLL-----KEINSKKEISFP----- 317
               TD +  V K      +  + T  EV  ADL+L +      E  ++ EI+       
Sbjct: 251 QFLLTDTVGFVSKLPHQLVKAFRSTLEEVTEADLLLHVVDLSHPEFETQIEITNKVLAEL 310

Query: 318 --KNIDFIFIGTKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  +++  KSDL     +  T++    IS+   E ++ELIN IK  +   + K  F
Sbjct: 311 GVSETPMVYVYNKSDLAPDEIAPPTDQDSVRISAKNLENIDELINMIKHHIFQNYVKATF 370

Query: 372 SIPSHKRHL 380
            IP  + +L
Sbjct: 371 LIPYDRGNL 379


>gi|262277163|ref|ZP_06054956.1| GTP-binding protein Era [alpha proteobacterium HIMB114]
 gi|262224266|gb|EEY74725.1| GTP-binding protein Era [alpha proteobacterium HIMB114]
          Length = 269

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G +N+GKS+L N  A K V+IV+    TT   +   ++ +   +   DT G  +  
Sbjct: 6   IALSGPTNSGKSTLLNCFANKKVSIVSKKIQTTNFNIEFSINFKNTQMIFIDTPGFYK-- 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
           D +    ++     +E AD+++ + +IN+K
Sbjct: 64  DNINDNYLREAIQGLERADIVIFILDINNK 93


>gi|225012019|ref|ZP_03702456.1| GTP-binding proten HflX [Flavobacteria bacterium MS024-2A]
 gi|225003574|gb|EEG41547.1| GTP-binding proten HflX [Flavobacteria bacterium MS024-2A]
          Length = 402

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 13/106 (12%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLD 263
            +G  G ++R    + ++G++N GKS+L N +AK +V     +   +  T R V+  +L 
Sbjct: 192 QRGNRGALVR----VALVGYTNVGKSTLMNVVAKSNVFAENKLFATLDTTVRKVVIGNLP 247

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
                  +SDT G          E  K T  EV+ ADL+L + +I+
Sbjct: 248 F-----LMSDTVGFIRKLPTQLVESFKSTLDEVQEADLLLHVVDIS 288


>gi|222097161|ref|YP_002531218.1| gtp-binding protein (hflx) [Bacillus cereus Q1]
 gi|229140349|ref|ZP_04268904.1| hypothetical protein bcere0013_34480 [Bacillus cereus BDRD-ST26]
 gi|221241219|gb|ACM13929.1| GTP-binding protein (hflX) [Bacillus cereus Q1]
 gi|228642910|gb|EEK99186.1| hypothetical protein bcere0013_34480 [Bacillus cereus BDRD-ST26]
          Length = 424

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|184159605|ref|YP_001847944.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           baumannii ACICU]
 gi|332876090|ref|ZP_08443874.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           baumannii 6014059]
 gi|183211199|gb|ACC58597.1| predicted GTPase [Acinetobacter baumannii ACICU]
 gi|322509515|gb|ADX04969.1| engB [Acinetobacter baumannii 1656-2]
 gi|323519535|gb|ADX93916.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332735708|gb|EGJ66751.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           baumannii 6014059]
          Length = 258

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL--------DLEGY 267
           +GY+I   G SNAGKSS  NAL  +K +A  +  PG T+ +    L        DL GY
Sbjct: 60  SGYEIAFAGRSNAGKSSAINALTNQKQLARASKKPGRTQMINFFSLGNPDQRLVDLPGY 118


>gi|120437318|ref|YP_863004.1| GTP-binding protein Era [Gramella forsetii KT0803]
 gi|117579468|emb|CAL67937.1| GTP-binding protein Era [Gramella forsetii KT0803]
          Length = 295

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 47/85 (55%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +    
Sbjct: 10  IIGNPNVGKSTLMNAFIGERLSIITSKAQTTRHRILGIVNGEDFQMILSDTPGIIKPAYE 69

Query: 284 VEKEGIKRTFLEVENADLILLLKEI 308
           ++   +       E+AD+++ + EI
Sbjct: 70  LQASMMDFVKSAFEDADVLIYIVEI 94


>gi|58266688|ref|XP_570500.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|56566292|gb|AAV98479.1| NOG2 [Cryptococcus neoformans var. neoformans]
 gi|56566307|gb|AAV98483.1| NOG2 [Cryptococcus neoformans var. neoformans]
 gi|57226733|gb|AAW43193.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 717

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  GI
Sbjct: 329 VGFIGYPNTGKSSIINTLKKKKVCTVAPIPGETKIWQYITLMRRIYLI---DCPGI 381


>gi|260462322|ref|ZP_05810530.1| GTP-binding protein Era [Mesorhizobium opportunistum WSM2075]
 gi|259031816|gb|EEW33084.1| GTP-binding protein Era [Mesorhizobium opportunistum WSM2075]
          Length = 306

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L    V+IVT    TTR ++      +   +   DT GI +  
Sbjct: 17  VALIGAPNAGKSTLVNQLVGAKVSIVTHKVQTTRAIVRGIAMHDNAQIVFVDTPGIFKPK 76

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             ++   +   +   ++AD++LLL
Sbjct: 77  RRLDTAMVTTAWGGAKDADIVLLL 100


>gi|224541329|ref|ZP_03681868.1| hypothetical protein CATMIT_00489 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525766|gb|EEF94871.1| hypothetical protein CATMIT_00489 [Catenibacterium mitsuokai DSM
           15897]
          Length = 292

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 13/101 (12%)

Query: 183 DVQNFSS-KEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           D++NF   K+++N   + LK       ++G   + IR     ++ G  N GKS+  N +A
Sbjct: 94  DLKNFKEEKKIVNMCRYQLKEKREKEAARGLKPKPIR----ALVAGIPNVGKSTFINKIA 149

Query: 241 KKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGIRE 279
           K+  A V + PG T+   ++ +D D E +     DT G+ E
Sbjct: 150 KRKAAAVGNKPGVTKAQQIIRVDKDFELF-----DTPGVLE 185


>gi|198276044|ref|ZP_03208575.1| hypothetical protein BACPLE_02228 [Bacteroides plebeius DSM 17135]
 gi|198271673|gb|EDY95943.1| hypothetical protein BACPLE_02228 [Bacteroides plebeius DSM 17135]
          Length = 825

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 11/136 (8%)

Query: 173 EADLD--FSEEEDVQNFSS---KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           EAD+    SEEE  +  ++    E ++  + + +++  +I+QGK     R    + ++G+
Sbjct: 65  EADMIEIVSEEEARRTAATDTYHEPISQGIPVSDEVMKNIAQGK-----RRTINVALVGN 119

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GK+SLFN +A      V +  G T D      D +GY  ++ D  G         +E
Sbjct: 120 PNCGKTSLFN-VASGGHEHVGNYSGVTVDAKEGFFDFQGYHFRLVDLPGTYSLSAYSPEE 178

Query: 288 GIKRTFLEVENADLIL 303
              R  +  E  D+I+
Sbjct: 179 LYVRKHIIEETPDVII 194


>gi|195500114|ref|XP_002097236.1| GE26110 [Drosophila yakuba]
 gi|194183337|gb|EDW96948.1| GE26110 [Drosophila yakuba]
          Length = 581

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L +    +V   PG T+ +  ++LD +   +K+ D  
Sbjct: 264 IKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKSMQEVELDSK---IKLIDCP 320

Query: 276 GI 277
           GI
Sbjct: 321 GI 322


>gi|159130365|gb|EDP55478.1| GTP binding protein (EngB), putative [Aspergillus fumigatus A1163]
          Length = 321

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-------------IDLDLEGY 267
           ++  LG SN GKSSL NA+  K++   +  PG TR++               + LD+ GY
Sbjct: 98  EVAFLGRSNVGKSSLLNAIMGKEMCWTSSKPGRTREMNAFGIGGTKGGESKIVLLDMPGY 157

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
                   GI     +  +  ++R F+ +++
Sbjct: 158 GKGSRTEWGIEILKYLQGRRQLRRAFILIDS 188


>gi|145356544|ref|XP_001422488.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582731|gb|ABP00805.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 351

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++GY   I+G  NAGKS+L N L    ++IVT  P TTR  +   L  E   + + DT G
Sbjct: 49  KSGYA-AIVGRPNAGKSTLMNDLVGTKLSIVTYKPQTTRHRILGILSDENSQMVLLDTPG 107

Query: 277 I 277
           +
Sbjct: 108 V 108


>gi|134095252|ref|YP_001100327.1| GTP-binding protein Era [Herminiimonas arsenicoxydans]
 gi|133739155|emb|CAL62204.1| GTP-binding protein Era [Herminiimonas arsenicoxydans]
          Length = 300

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R GY I I+G  N GKS+L N L    V+I +    TTR  +T    ++       DT G
Sbjct: 11  RCGY-IAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRITGIQTVDDAQFVYVDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENA-DLILLLKEINSKKEIS------FPKNIDFIFIGTKS 329
            +        + + RT      A D+IL + E  +  +         PKN+  I +  KS
Sbjct: 70  FQTRHSNALNKTLNRTVTTTLTASDVILFVIEAGTFGQADQQVLDLIPKNVPCILVINKS 129

Query: 330 D 330
           D
Sbjct: 130 D 130


>gi|109900278|ref|YP_663533.1| GTP-binding protein, HSR1-related [Pseudoalteromonas atlantica T6c]
 gi|109702559|gb|ABG42479.1| GTP-binding protein HflX [Pseudoalteromonas atlantica T6c]
          Length = 432

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 9/124 (7%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +     QG+   +      + ++G++NAGKS+LFN + + +V     +  T    L  I+
Sbjct: 181 VQKQREQGRRARVRAEIPTLALVGYTNAGKSTLFNTITQSEVYAADQLFATLDPTLRRIE 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
           L   G  + ++DT G IR    D+V     K T  E + ADL+L + + +  +   F +N
Sbjct: 241 LQDVGPAI-LADTVGFIRHLPHDLV--AAFKATLQETQQADLLLHVVDYSDDQ---FREN 294

Query: 320 IDFI 323
           ID +
Sbjct: 295 IDQV 298


>gi|325924507|ref|ZP_08186026.1| GTP-binding proten HflX [Xanthomonas gardneri ATCC 19865]
 gi|325545002|gb|EGD16337.1| GTP-binding proten HflX [Xanthomonas gardneri ATCC 19865]
          Length = 427

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G++NAGKS+LFNAL   + A V D    T D     + L G    ++DT G    
Sbjct: 188 RIALVGYTNAGKSTLFNALTGAE-AYVADQLFATLDPTVRRIALPGGSAILADTVGF--V 244

Query: 281 DDIVEK--EGIKRTFLEVENADLIL 303
            D+  +     + T  E  +ADL+L
Sbjct: 245 RDLPHQLVAAFRSTLSEARDADLLL 269


>gi|289619314|emb|CBI53597.1| unnamed protein product [Sordaria macrospora]
          Length = 749

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 14/97 (14%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + +G++  ++GH+  GKS+L  ALA+++V I T I      +L ++ +L G      DT 
Sbjct: 219 LASGHRYGLVGHNGVGKSTLLRALARREVPIPTHI-----SILHVEQELTG-----DDTP 268

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
            I+   D      + R  L  E A++I  L +I + +
Sbjct: 269 AIQAVLDA----DVWRKVLLKEQAEIIKKLADIEAAR 301


>gi|258423854|ref|ZP_05686739.1| GTP-binding protein HflX [Staphylococcus aureus A9635]
 gi|257845883|gb|EEV69912.1| GTP-binding protein HflX [Staphylococcus aureus A9635]
 gi|283470521|emb|CAQ49732.1| GTP-binding proten HflX [Staphylococcus aureus subsp. aureus ST398]
 gi|329733580|gb|EGG69908.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           21193]
          Length = 412

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 206 FQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 289


>gi|195107269|ref|XP_001998236.1| GI23744 [Drosophila mojavensis]
 gi|193914830|gb|EDW13697.1| GI23744 [Drosophila mojavensis]
          Length = 583

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 72/153 (47%), Gaps = 9/153 (5%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L +    +V   PG T+ +  ++LD +   +K+ D  
Sbjct: 266 IKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKAMQEVELDSK---IKLIDCP 322

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG----TKSDL 331
           GI  T   +  EG + +   ++NA  +  +K+  S  E    +     F      T  D 
Sbjct: 323 GIVFTS--IASEGNQNSHAVLKNAQRVGDVKDPFSIAESVLKRASKEYFCKMYDITNYDT 380

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           +  +  +    +  F  +G+ +++   +S+L++
Sbjct: 381 FEEFFAKKAARMGKFLKKGVPDVVAAARSVLND 413


>gi|117626427|ref|YP_859750.1| putative GTPase [Escherichia coli APEC O1]
 gi|218561234|ref|YP_002394147.1| hypothetical protein ECS88_4650 [Escherichia coli S88]
 gi|237703734|ref|ZP_04534215.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|115515551|gb|ABJ03626.1| putative GTPase [Escherichia coli APEC O1]
 gi|218368003|emb|CAR05803.1| conserved hypothetical protein; putataive GTPase [Escherichia coli
           S88]
 gi|226901646|gb|EEH87905.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|323950288|gb|EGB46169.1| hypothetical protein ERKG_03182 [Escherichia coli H252]
          Length = 294

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 83/199 (41%), Gaps = 15/199 (7%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHGVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTFLEVENADLILLLK 306
            + G TR    + L +    + + D  GI ET   D   +E  ++   E++    IL   
Sbjct: 68  PLNGCTRQAHRLTLQIGERRMTLVDLPGIGETPQHDQEYREIYRQLLPELDLIIWILRAD 127

Query: 307 EINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEY---DHLISSFTGEGLEELI 355
           E     +I+  + +         F+F+ + +D      EE+   +   S      L  + 
Sbjct: 128 ERAYAADIAMHQFLLNEGADPSRFLFVLSHADRVFP-AEEWNATEKCPSRHQELSLATVT 186

Query: 356 NKIKSILSNKFKKLPFSIP 374
            ++ ++  + F  LP + P
Sbjct: 187 ARVATLFPSSFPVLPVAAP 205


>gi|148267794|ref|YP_001246737.1| GTP-binding protein, HSR1-related [Staphylococcus aureus subsp.
           aureus JH9]
 gi|147740863|gb|ABQ49161.1| GTP-binding protein, HSR1-related [Staphylococcus aureus subsp.
           aureus JH9]
          Length = 412

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 206 FQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 289


>gi|78779761|ref|YP_397873.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9312]
 gi|78713260|gb|ABB50437.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9312]
          Length = 303

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 33/173 (19%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + +LG  N GKS+L N L  + + I + I  TTR+ L   L  +   +   DT G
Sbjct: 5   RSGF-VTLLGRPNVGKSTLINKLIGEKITITSPIAQTTRNKLKGILTTKNGQIIFVDTPG 63

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISF--PKNIDFIFIG 326
           + +    + +  +K     +   D+++++  ++S +E        ++F      +FI   
Sbjct: 64  VHKPHHRLGEILVKNAKSAINGVDMVIVV--VDSSEEPGRGDEYIMNFLVANQTEFIVAL 121

Query: 327 TKSDLYSTYTEEYDHL-----------------ISSFTGEGLEELINKIKSIL 362
            K DL +   EE+  L                 +S+  GEG  EL+N + + L
Sbjct: 122 NKWDLVN---EEFRKLRLDQYRKFFGINRNFQILSASQGEGCSELVNMLLTFL 171


>gi|186684896|ref|YP_001868092.1| GTP-binding protein, HSR1-related [Nostoc punctiforme PCC 73102]
 gi|186467348|gb|ACC83149.1| GTP-binding protein, HSR1-related [Nostoc punctiforme PCC 73102]
          Length = 530

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 14/128 (10%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI-----PGTTR 255
             + +H S+ +     R    + ++G++NAGKS+L NAL   +V     +     P T R
Sbjct: 338 TQLQAHRSRLRQRRQHREVPSVALVGYTNAGKSTLLNALTNAEVYTADQLFATLDPTTRR 397

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL---------LLK 306
            V+      E   + I+DT G          +  + T  EV  AD +L          L+
Sbjct: 398 LVIPYGETNEHQEILITDTVGFIHELPASLMDAFRATLEEVTEADALLHLVDLSHPAWLR 457

Query: 307 EINSKKEI 314
            I S +EI
Sbjct: 458 HIRSVREI 465


>gi|331244039|ref|XP_003334661.1| nucleolar GTP-binding protein 2 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309313651|gb|EFP90242.1| nucleolar GTP-binding protein 2 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 724

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 342 RKQISVGFIGYPNVGKSSIINTLKKKKVCNVAPIPGETKVWQYITLMRRIYLI---DCPG 398

Query: 277 I 277
           I
Sbjct: 399 I 399


>gi|303390847|ref|XP_003073654.1| GTP-binding protein [Encephalitozoon intestinalis ATCC 50506]
 gi|303302801|gb|ADM12294.1| GTP-binding protein [Encephalitozoon intestinalis ATCC 50506]
          Length = 413

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N GKSS+ N L  K+V  V  IPG T+    I L    YL+   D  GI    D  
Sbjct: 262 VGYPNTGKSSIINTLRNKEVCKVAPIPGETKVWQYIALTRGIYLI---DCPGIVPIPDY- 317

Query: 285 EKEGIKRTFLEVEN 298
             + + R  + +EN
Sbjct: 318 -DQAVLRGAVRIEN 330


>gi|301786030|ref|XP_002928428.1| PREDICTED: ras-related and estrogen-regulated growth inhibitor-like
           [Ailuropoda melanoleuca]
          Length = 199

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 31/154 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           K+ I G +  GKS+L      K      D  +  T R   TID ++    ++I DTAG  
Sbjct: 8   KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEV--VTMEILDTAG-- 63

Query: 279 ETDDIVEKEGIKRT---FLEVENA------DLILLLKEINSKKEISFPKNIDFIFIGTKS 329
             +D +++EG  R    F+ V +       + +L LK I    EI  PKN+  I +G K+
Sbjct: 64  -QEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILD--EIKKPKNVTLILVGNKA 120

Query: 330 DL---YSTYTEEYDHL----------ISSFTGEG 350
           DL       TEE + L           S+ TGEG
Sbjct: 121 DLDHSRQVSTEEGEKLATELACAFYECSACTGEG 154


>gi|229080959|ref|ZP_04213473.1| hypothetical protein bcere0023_36000 [Bacillus cereus Rock4-2]
 gi|228702376|gb|EEL54848.1| hypothetical protein bcere0023_36000 [Bacillus cereus Rock4-2]
          Length = 424

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|227495128|ref|ZP_03925444.1| GTP-binding protein Era [Actinomyces coleocanis DSM 15436]
 gi|226831580|gb|EEH63963.1| GTP-binding protein Era [Actinomyces coleocanis DSM 15436]
          Length = 352

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 203 ISSHISQGKLGEI-----IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           +   +S G L E       R G+ I I+G  N GKS+L NAL  + +AI +  P TTR  
Sbjct: 37  LPGQVSAGSLVEADHDPNFRAGF-IAIVGRPNVGKSTLTNALVGEKIAITSMRPETTRHN 95

Query: 258 LTIDLDLEGYLVKISDTAG 276
           +   +  + Y + + DT G
Sbjct: 96  VRGVVHGDDYQLVLVDTPG 114


>gi|88801296|ref|ZP_01116824.1| GTP-binding protein [Polaribacter irgensii 23-P]
 gi|88781954|gb|EAR13131.1| GTP-binding protein [Polaribacter irgensii 23-P]
          Length = 203

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 223 VILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRE 279
             +G SN GKSSL N L  +KD+A ++  PG T+ +    ++ E +LV +     A + +
Sbjct: 27  AFIGRSNVGKSSLINMLMERKDLAKISGKPGKTQLINHFKINEEWFLVDLPGYGYASVSK 86

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI 325
              ++ +  I+  F E E      +L  I+S+ +   P+ ID  F+
Sbjct: 87  KKRVIFQYFIENYFKEREQLVCTFVL--IDSRHD---PQKIDLDFM 127


>gi|109899453|ref|YP_662708.1| GTP-binding protein Era [Pseudoalteromonas atlantica T6c]
 gi|109701734|gb|ABG41654.1| GTP-binding protein Era [Pseudoalteromonas atlantica T6c]
          Length = 300

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L NAL  + V+I +  P TTR  ++ ID       + + DT G+   
Sbjct: 10  IAIVGRPNVGKSTLLNALLGQKVSITSRKPQTTRHRIMGIDTHENRQAIYV-DTPGLH-- 66

Query: 281 DDIVEKEGIKR 291
             I EK  I R
Sbjct: 67  --IEEKRAINR 75


>gi|125973114|ref|YP_001037024.1| GTP-binding protein [Clostridium thermocellum ATCC 27405]
 gi|256003908|ref|ZP_05428894.1| GTP-binding protein HSR1-related protein [Clostridium thermocellum
           DSM 2360]
 gi|281417306|ref|ZP_06248326.1| ribosome biogenesis GTP-binding protein YsxC [Clostridium
           thermocellum JW20]
 gi|125713339|gb|ABN51831.1| GTP-binding protein [Clostridium thermocellum ATCC 27405]
 gi|255992036|gb|EEU02132.1| GTP-binding protein HSR1-related protein [Clostridium thermocellum
           DSM 2360]
 gi|281408708|gb|EFB38966.1| ribosome biogenesis GTP-binding protein YsxC [Clostridium
           thermocellum JW20]
 gi|316940660|gb|ADU74694.1| ribosome biogenesis GTP-binding protein YsxC [Clostridium
           thermocellum DSM 1313]
          Length = 207

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 41/171 (23%)

Query: 222 IVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTR--DVLTID-----LDLEGY-LVKIS 272
           I  +G SN GKSSL N  L +K++A V   PG TR  +   ID     +DL GY   K+ 
Sbjct: 32  ITFVGRSNVGKSSLINTMLNRKNLAKVAATPGRTRVINFYNIDDKLYFVDLPGYGFAKVP 91

Query: 273 DTAGIRETDDI----VEKEGIKRTFLEVE-----NADLILLLKEINSKKEISFPKNIDFI 323
            T      D I    +E++ +K+  + V+      +D +L+ + + + ++        ++
Sbjct: 92  KTMKTGWKDIIETYLIERKQLKKVIMLVDIRHSPTSDDVLMHEWLKAMRK-------SYV 144

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS--NKFKKLPFS 372
            + TK D                    ++E I+ I+SIL   +  K +PFS
Sbjct: 145 VVATKLD--------------KIPRTKIKERISDIRSILKLEDDVKIIPFS 181


>gi|253576082|ref|ZP_04853414.1| GTP-binding protein Era [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844425|gb|EES72441.1| GTP-binding protein Era [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 300

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I+G  N GKS+L N +  + +AI++D P TTR+ +      E   +   DT GI +
Sbjct: 11  VAIVGRPNVGKSTLMNHIIGQKIAIMSDKPQTTRNKIHGVYTSEEMQIVFLDTPGIHK 68


>gi|213158842|ref|YP_002320840.1| GTP-binding [Acinetobacter baumannii AB0057]
 gi|213058002|gb|ACJ42904.1| GTP-binding [Acinetobacter baumannii AB0057]
          Length = 224

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL--------DLEGY 267
           +GY+I   G SNAGKSS  NAL  +K +A  +  PG T+ +    L        DL GY
Sbjct: 26  SGYEIAFAGRSNAGKSSAINALTNQKQLARASKKPGRTQMINFFSLGNPDQRLVDLPGY 84


>gi|167523148|ref|XP_001745911.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775712|gb|EDQ89335.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1162

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKD--VAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           + R GY + ++G S AGK++L NAL  +     +  D+  + R +   DLD      ++S
Sbjct: 595 VARGGYCLALMGPSGAGKTTLLNALCGRATYAKVRGDVKFSGRAISRDDLDFVAQFDELS 654

Query: 273 DTAGIRET 280
           D   IRE+
Sbjct: 655 DEFTIRES 662


>gi|323441087|gb|EGA98794.1| GTP-binding protein [Staphylococcus aureus O11]
 gi|323443956|gb|EGB01567.1| GTP-binding protein [Staphylococcus aureus O46]
          Length = 412

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 206 FQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 289


>gi|307105429|gb|EFN53678.1| hypothetical protein CHLNCDRAFT_32043 [Chlorella variabilis]
          Length = 415

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 22/174 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + ++G++NAGKS+L N L +  V +  D    T D  T  ++L G   +  +DT G  + 
Sbjct: 161 VALVGYTNAGKSTLLNTLTQAGV-LAEDKLFATLDPTTRRVELPGGKALLFTDTVGFIQK 219

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFP---------KNIDFIFIGTK 328
                    + T  E+++A L+L + ++   N+  +I            +N+  + +  K
Sbjct: 220 LPTQLVAAFRATLEEIKDASLLLHVVDVSHPNAAAQIDAVNGVLAELGVENMPTLNVWNK 279

Query: 329 SDLYS--------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            D  +            E    +S  TGEGL E++ ++ + L +    +   IP
Sbjct: 280 VDACADPEVVRAVAARREQTVCVSGLTGEGLGEMLERVSAKLQDSMVAVHVLIP 333


>gi|304413541|ref|ZP_07395014.1| GTP-binding protein [Candidatus Regiella insecticola LSR1]
 gi|304284384|gb|EFL92777.1| GTP-binding protein [Candidatus Regiella insecticola LSR1]
          Length = 310

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L NAL  + V+I +  P TTR  + + +  EG Y     DT G+   
Sbjct: 12  VAIVGRPNVGKSTLLNALLGQKVSITSRKPQTTRHRI-MGIHTEGAYQTIYIDTPGLH-- 68

Query: 281 DDIVEKEGIKR 291
             I EK  I R
Sbjct: 69  --IEEKRAINR 77


>gi|326201608|ref|ZP_08191479.1| ferrous iron transport protein B [Clostridium papyrosolvens DSM
           2782]
 gi|325988208|gb|EGD49033.1| ferrous iron transport protein B [Clostridium papyrosolvens DSM
           2782]
          Length = 804

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 12/90 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK-----ISD 273
           G KI + G+ N GK++LFNAL   +   V + PG T +        EG L K     I D
Sbjct: 2   GIKIALAGNPNCGKTTLFNALTGSN-QFVGNWPGVTVE------KKEGKLKKHNDVIIMD 54

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLIL 303
             GI        +E + R +L  E  D IL
Sbjct: 55  LPGIYSLSPYTLEEVVARNYLIKERPDAIL 84


>gi|256851136|ref|ZP_05556525.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
           jensenii 27-2-CHN]
 gi|260660560|ref|ZP_05861475.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
           jensenii 115-3-CHN]
 gi|282934517|ref|ZP_06339771.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
           jensenii 208-1]
 gi|256616198|gb|EEU21386.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548282|gb|EEX24257.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
           jensenii 115-3-CHN]
 gi|281301410|gb|EFA93700.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
           jensenii 208-1]
          Length = 280

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 13/62 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VKISDTA 275
           +I ++G  N GKS++ N L  ++VAIV D PG T+         + +L     V+I DT 
Sbjct: 122 RICLVGIPNCGKSTIINRLVGRNVAIVGDRPGVTKG--------QSWLKTSESVQILDTP 173

Query: 276 GI 277
           GI
Sbjct: 174 GI 175


>gi|257068878|ref|YP_003155133.1| GTP-binding protein Era [Brachybacterium faecium DSM 4810]
 gi|256559696|gb|ACU85543.1| GTP-binding protein Era [Brachybacterium faecium DSM 4810]
          Length = 313

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ + ++G  N GKS+L NAL  + VAI +  P TTR  +   +  +   + + D
Sbjct: 4   ETHRSGF-VALVGRPNVGKSTLTNALVGEKVAITSTKPQTTRRAIRGIVTRDEAQIILVD 62

Query: 274 TAGI 277
           T G+
Sbjct: 63  TPGV 66


>gi|291613729|ref|YP_003523886.1| ribosome biogenesis GTP-binding protein YlqF [Sideroxydans
           lithotrophicus ES-1]
 gi|291583841|gb|ADE11499.1| ribosome biogenesis GTP-binding protein YlqF [Sideroxydans
           lithotrophicus ES-1]
          Length = 301

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I+I+G  N GKS+L N L K+    V D P  T++  + DL+    L+   DT G+
Sbjct: 118 RIMIMGIPNVGKSTLMNTLLKRRAVAVGDEPAITKNQQSFDLNDHTILI---DTPGL 171


>gi|223039886|ref|ZP_03610170.1| ribosome biogenesis GTP-binding protein YsxC [Campylobacter rectus
           RM3267]
 gi|222878895|gb|EEF13992.1| ribosome biogenesis GTP-binding protein YsxC [Campylobacter rectus
           RM3267]
          Length = 208

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 14/105 (13%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           N  ++  LG SN GKSSL NAL  +K +A  +  PG TR +   +++            G
Sbjct: 23  NSSEVAFLGRSNVGKSSLINALVNQKGLAKSSSTPGKTRLINFFEVEY---------ARG 73

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID 321
           I+   D V +E    TF+++       + K ++++    + KN+D
Sbjct: 74  IKNEQDEVSEERANLTFVDLPGFGYAKVAKSMHAQ----WRKNLD 114


>gi|218258196|ref|ZP_03474598.1| hypothetical protein PRABACTJOHN_00252 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225691|gb|EEC98341.1| hypothetical protein PRABACTJOHN_00252 [Parabacteroides johnsonii
           DSM 18315]
          Length = 403

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 22/129 (17%)

Query: 192 VLNDILFLKNDI-----SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-- 244
           +L+ I  LK D+        + +   G+++R    + ++G++N GKS+L N L+K DV  
Sbjct: 173 ILDKISKLKRDLVEIDKQKSVQRKNRGKMVR----VALVGYTNVGKSTLMNQLSKSDVFA 228

Query: 245 --AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300
              +   +  T R V+  +L    +L  +SDT G IR+   ++V  E  K T  EV  AD
Sbjct: 229 ENKLFATLDTTVRKVIVDNL---PFL--LSDTVGFIRKLPTELV--ESFKSTLDEVREAD 281

Query: 301 LILLLKEIN 309
           L++ + +I+
Sbjct: 282 LLVHVVDIS 290


>gi|94496399|ref|ZP_01302976.1| GTPase [Sphingomonas sp. SKA58]
 gi|94424145|gb|EAT09169.1| GTPase [Sphingomonas sp. SKA58]
          Length = 444

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 41/191 (21%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280
           I ++G++NAGKS+LFN L   +V +  D+   T D     + L G    I SDT G    
Sbjct: 211 IALVGYTNAGKSTLFNRLTGAEV-MAEDLLFATLDPTMRQIALPGLDKAILSDTVGF--V 267

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEI-----NSKKE-------------------- 313
            D+  +     + T  EV +ADLI+ +++I     +++++                    
Sbjct: 268 SDLPTQLIAAFRATLEEVLSADLIVHVRDIAHPDSDAQRDDVLDVLGELGVTGEAALERG 327

Query: 314 ---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-SSFTGEGLEELINKIKSILS 363
                    I     +D +   + S +        D +I S+ TGEG+++L   I   ++
Sbjct: 328 EGTSEPPPIIEAWNKLDLLDADSMSLVREQAARREDVVILSALTGEGMDQLQRMISDHMT 387

Query: 364 NKFKKLPFSIP 374
              K   FSIP
Sbjct: 388 RGAKVYTFSIP 398


>gi|327281444|ref|XP_003225458.1| PREDICTED: mitochondrial GTPase 1-like [Anolis carolinensis]
          Length = 319

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 222 IVILGHSNAGKSSLFNA-----LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I+++G  N GKSS+ N+     L K   ++V   PG TR VLT     E  L+ + DT G
Sbjct: 142 IMVIGVPNVGKSSVINSVRRRHLKKGKASLVGGAPGVTRAVLTKIQVCERPLIFLLDTPG 201

Query: 277 IRETDDIVEKEGIKRTFLEVENADLI-------LLLKEINSKKEISF 316
           +        + G+K          L+        LL  +N +K+ S+
Sbjct: 202 VLSPQIECIETGLKLALCGAIKDHLVGEEIIADYLLYALNCQKQFSY 248


>gi|299535723|ref|ZP_07049044.1| GTP-binding protein YqeH [Lysinibacillus fusiformis ZC1]
 gi|298728923|gb|EFI69477.1| GTP-binding protein YqeH [Lysinibacillus fusiformis ZC1]
          Length = 367

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 25/171 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+  N + K+     +V   +  PGTT D++ I LD    L   
Sbjct: 158 RKGQNVYVVGCTNVGKSTFINRIIKQATGEGEVITTSHFPGTTLDMIDIPLDDGSALY-- 215

Query: 272 SDTAGI------------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
            DT GI             E   I+ K+ IK    + +NA   L +  +     I   ++
Sbjct: 216 -DTPGIINHHQMAHHIDSSELKYIMPKKEIKPKVYQ-QNAGQTLFIGALARFDFIQGDRS 273

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL----EELINKIKSILSNKF 366
              I +     ++ T  E+ D L     GE L     + I+++  ++ ++F
Sbjct: 274 AFTIHVANDLPIHRTKLEKADALYEEHKGELLAPPTADFIDQLPPLVRHEF 324


>gi|289615795|emb|CBI57536.1| unnamed protein product [Sordaria macrospora]
          Length = 624

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GKSS+ NAL  K V  V  IPG T+    + L    YL+       
Sbjct: 323 RKQISVGLVGYPNVGKSSIINALRGKAVTKVAPIPGETKVWQYVTLMRRIYLIDCPGIVP 382

Query: 277 IRETDDIVEKEGIKRTFLEVENAD 300
             + D    ++ + R  + VEN D
Sbjct: 383 PNQND--TPQDLLLRGVVRVENVD 404


>gi|212696007|ref|ZP_03304135.1| hypothetical protein ANHYDRO_00543 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676994|gb|EEB36601.1| hypothetical protein ANHYDRO_00543 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 109

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + ++G +N GKS+L   +  + ++I+++ P TTRD + I  + E   +   DT 
Sbjct: 1   MKSGF-VSVVGRANVGKSTLMEKILGEKISIISNKPQTTRDEIKIIYNDENSQIIFLDTP 59

Query: 276 GIR 278
           GI+
Sbjct: 60  GIQ 62


>gi|156102076|ref|XP_001616731.1| GTPase [Plasmodium vivax SaI-1]
 gi|148805605|gb|EDL47004.1| GTPase, putative [Plasmodium vivax]
          Length = 518

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G+ N GKS++ N+L KK V I   +PG T+    I L  + YL+   D  GI    
Sbjct: 323 IGLIGYPNVGKSAIINSLKKKVVCISACLPGQTKYWQFIKLTSKIYLI---DCPGIVPY- 378

Query: 282 DIVEKEGIKRTFLEVE 297
           DI + + I R  + +E
Sbjct: 379 DIEDSDKILRCTMRLE 394


>gi|314933424|ref|ZP_07840789.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus caprae
           C87]
 gi|313653574|gb|EFS17331.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus caprae
           C87]
          Length = 288

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAK+ +A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKV---GKSLQLLDTPGI 175


>gi|307564581|ref|ZP_07627121.1| GTP-binding protein Era [Prevotella amnii CRIS 21A-A]
 gi|307346739|gb|EFN92036.1| GTP-binding protein Era [Prevotella amnii CRIS 21A-A]
          Length = 293

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTDNAQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  ++ +   + +AD++L + ++    +    KNIDF+
Sbjct: 69  MQEMMLQFSESALADADILLYVTDVVEDPK----KNIDFL 104


>gi|298694597|gb|ADI97819.1| GTP-binding protein [Staphylococcus aureus subsp. aureus ED133]
          Length = 412

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++ ++G++NAGKSS FN LA     +KD    T  P  TR +   D    G+ + ISDT
Sbjct: 206 FQVALVGYANAGKSSWFNVLANEETYEKDQLFATLDPK-TRQIQIND----GFNLIISDT 260

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            G  +          K T  E + ADL++
Sbjct: 261 VGFIQKLPTTLIAAFKSTLEEAKGADLLV 289


>gi|297710098|ref|XP_002831742.1| PREDICTED: guanine nucleotide-binding protein-like 3-like
           protein-like [Pongo abelii]
          Length = 686

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +LGE+ R   ++ ++G  N GKSSL N+L +     V  +PG T+ +  + LD     ++
Sbjct: 349 RLGEV-RTHIRVGVVGLPNVGKSSLINSLKRSRACGVGAVPGITKFMQEVYLD---KFIR 404

Query: 271 ISDTAGI 277
           + D  GI
Sbjct: 405 LLDAPGI 411


>gi|195349203|ref|XP_002041136.1| GM15388 [Drosophila sechellia]
 gi|194122741|gb|EDW44784.1| GM15388 [Drosophila sechellia]
          Length = 581

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L +    +V   PG T+ +  ++LD +   +K+ D  
Sbjct: 264 IKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKSMQEVELDSK---IKLIDCP 320

Query: 276 GI 277
           GI
Sbjct: 321 GI 322


>gi|153814162|ref|ZP_01966830.1| hypothetical protein RUMTOR_00371 [Ruminococcus torques ATCC 27756]
 gi|331087817|ref|ZP_08336742.1| GTP-binding protein engB [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848558|gb|EDK25476.1| hypothetical protein RUMTOR_00371 [Ruminococcus torques ATCC 27756]
 gi|330409512|gb|EGG88953.1| GTP-binding protein engB [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 202

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++   G SN GKSSL NAL  +K  A ++  PG T+ +   +++ E YLV +      R 
Sbjct: 25  EVAFAGKSNVGKSSLINALMNRKSYARISATPGKTQTINFYNINDEMYLVDLPGYGYARV 84

Query: 280 TDDIVEKEG--IKRTFLEVENADLILLLKEI 308
           ++   E+ G  I+R     +    + LL +I
Sbjct: 85  SEKEKEQWGRMIERYLHSSKQLKAVFLLIDI 115


>gi|147678455|ref|YP_001212670.1| GTPase [Pelotomaculum thermopropionicum SI]
 gi|146274552|dbj|BAF60301.1| GTPase [Pelotomaculum thermopropionicum SI]
          Length = 434

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 75/182 (41%), Gaps = 28/182 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAI-----VTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + I+G++NAGKS+L   L   DV +      T  P T R VL    D E  L  ++DT G
Sbjct: 216 VAIVGYTNAGKSTLLKKLTGADVLVEDKLFATLDPVTRRVVLP---DNETIL--LTDTVG 270

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF---PKNIDFIF 324
             +          + T  EV  ADL+L         + ++I +  E+           + 
Sbjct: 271 FIQNLPHHLVAAFRATLEEVMEADLLLHVVDASHPYMEEQIGAVNEVLASLGAAGKPLVM 330

Query: 325 IGTKSDL------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +  K+DL      +   +      +S+  G G+E+L+  I   L  +  K  F IP  K 
Sbjct: 331 VYNKADLLPDAKFFREKSSPPAVAVSALKGWGMEDLLAAIARALPGRRIKASFFIPYRKS 390

Query: 379 HL 380
            L
Sbjct: 391 GL 392


>gi|74316206|ref|YP_313946.1| cell division checkpoint GTPase YihA [Thiobacillus denitrificans
           ATCC 25259]
 gi|119369277|sp|Q3SMA6|ENGB_THIDA RecName: Full=Probable GTP-binding protein EngB
 gi|74055701|gb|AAZ96141.1| GTP-binding [Thiobacillus denitrificans ATCC 25259]
          Length = 206

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 9/115 (7%)

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD-VA 245
            ++K VLN   F         S  +  ++  +  ++   G SNAGKSS  N L +K+ +A
Sbjct: 1   MTAKPVLNRAHFF-------TSVAQFRDLPPSRAEVAFAGRSNAGKSSAINLLTRKNRLA 53

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK-EGIKRTFLEVENA 299
             +  PG T+ +   +L  + YLV +      +   ++  K EG+   +L+   A
Sbjct: 54  FTSKTPGRTQLINFFELTADTYLVDLPGYGYAKVPPEVKAKWEGLLSRYLQEREA 108


>gi|322488157|emb|CBZ23403.1| putative GTPase [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 627

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 8/96 (8%)

Query: 198 FLKNDISSHISQ-GKLGEIIRNGYK-------IVILGHSNAGKSSLFNALAKKDVAIVTD 249
           F K ++ S + Q  +L  +   G K       + ++G+ N GKSSL N L +K V  V  
Sbjct: 289 FGKGNVISLLRQFARLHNVTHRGSKRTKTPISVGVIGYPNVGKSSLINTLRRKSVCKVAP 348

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           IPG T+    + L    +L+        RE+++ ++
Sbjct: 349 IPGETKVWQYVALTRSIFLIDCPGVVYDRESNNDIQ 384


>gi|309704098|emb|CBJ03445.1| putative ATP/GTP-binding protein [Escherichia coli ETEC H10407]
          Length = 294

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L   I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSHLTFLPEEIRQKILE-HLRSAIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + G TR    + L L    + + D  GI ET
Sbjct: 68  PLNGCTRQAHRLTLQLGERRMTLVDLPGIGET 99


>gi|296284134|ref|ZP_06862132.1| GTPase [Citromicrobium bathyomarinum JL354]
          Length = 440

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 6/90 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280
           I ++G++NAGKS++FN L   DV +  D+   T D     + L      I SDT G    
Sbjct: 201 IALVGYTNAGKSTIFNRLTGADV-MAEDLLFATLDPTMRAISLPAVEKAILSDTVGF--I 257

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEI 308
            D+  +     + T  EV NADLIL +++I
Sbjct: 258 SDLPTQLVAAFRATLEEVTNADLILHVRDI 287


>gi|225021216|ref|ZP_03710408.1| hypothetical protein CORMATOL_01228 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945949|gb|EEG27158.1| hypothetical protein CORMATOL_01228 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 560

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           +I I G++NAGKSSL NA+    V +V D    T D  T   +L +G  V  +DT G   
Sbjct: 333 QIAIAGYTNAGKSSLINAITGAGV-LVEDALFATLDPTTRRAELADGRTVVFTDTVGFVR 391

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E  + T  EV  ADL+L
Sbjct: 392 HLPTQLVEAFRSTLEEVVGADLVL 415


>gi|148543969|ref|YP_001271339.1| GTP-binding protein Era [Lactobacillus reuteri DSM 20016]
 gi|184153364|ref|YP_001841705.1| GTP-binding protein [Lactobacillus reuteri JCM 1112]
 gi|227364882|ref|ZP_03848928.1| GTP-binding protein Era [Lactobacillus reuteri MM2-3]
 gi|325682493|ref|ZP_08162010.1| GTP-binding protein Era [Lactobacillus reuteri MM4-1A]
 gi|148531003|gb|ABQ83002.1| GTP-binding protein Era [Lactobacillus reuteri DSM 20016]
 gi|183224708|dbj|BAG25225.1| GTP-binding protein [Lactobacillus reuteri JCM 1112]
 gi|227070086|gb|EEI08463.1| GTP-binding protein Era [Lactobacillus reuteri MM2-3]
 gi|324978332|gb|EGC15282.1| GTP-binding protein Era [Lactobacillus reuteri MM4-1A]
          Length = 301

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 37/196 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N +  + VAI++++  TTR+ +  I    E  ++ I DT GI + 
Sbjct: 11  VAIIGRPNVGKSTLLNYVVGQKVAIMSNVAQTTRNKIQGIYTSPEAQIIFI-DTPGIHKP 69

Query: 281 D----DIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFP-----KN 319
                D +EK  +      ++  D +L +     K            K+++ P       
Sbjct: 70  STKLGDFMEKSAMS----ALDEVDAVLFVVSATEKRGPGDDFIIERLKKVNQPIFLVVNK 125

Query: 320 IDFIFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           ID I     +DL     +  D L       IS+  G  +  LIN I  IL N  +  P  
Sbjct: 126 IDQI---NPNDLPEIVDQYKDTLPFKGIVPISALQGNNVNNLINDIIKILPNGPQYYPAD 182

Query: 373 IPSHKRHLYHLSQTVR 388
             S     + +++ +R
Sbjct: 183 QVSDHPERFVIAEMIR 198


>gi|326800599|ref|YP_004318418.1| ribosome biogenesis GTPase RsgA [Sphingobacterium sp. 21]
 gi|326551363|gb|ADZ79748.1| ribosome biogenesis GTPase RsgA [Sphingobacterium sp. 21]
          Length = 350

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 12/114 (10%)

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           ++DL+F+  +   N S K +   I      I S  +   + + +  G  IV++G S  GK
Sbjct: 149 KSDLEFNRHQ--VNESLKHIDRQIPVFFTSILSPETILPIRKFVSRGESIVLVGSSGVGK 206

Query: 233 SSLFNALAKKDVAIVTDI---PGTTRDVLT----IDLDLEGYLVKISDTAGIRE 279
           SSL NAL ++ V + ++I    G  R   T    + +D  G L+   DT G+RE
Sbjct: 207 SSLINALCERTVFLTSEISKSSGKGRHTSTRREMVLMDDSGILI---DTPGVRE 257


>gi|226468480|emb|CAX69917.1| Putative guanine nucleotide-binding protein-like 3 homolog
           [Schistosoma japonicum]
          Length = 407

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-- 281
           ++G  N GKS++ N L ++ V +  ++PG TR    + +D   +L+    T   + +D  
Sbjct: 232 VVGLPNTGKSAIINTLKRQKVCVSGNVPGLTRRSQRVRIDKNLFLLDAPGTLVSKSSDAS 291

Query: 282 DIVEKEGIKRTFL 294
           D+V K  IK   L
Sbjct: 292 DLVLKNCIKPEML 304


>gi|188575916|ref|YP_001912845.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520368|gb|ACD58313.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 428

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE 279
           +I ++G++NAGKS+LFNAL   + A V D    T D     + L G    ++DT G +R+
Sbjct: 189 RIALVGYTNAGKSTLFNALTGAE-AYVADQLFATLDPTVRRIALPGGSAILADTVGFVRD 247

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL 303
              ++V     + T  E  +ADL+L
Sbjct: 248 LPHELV--AAFRSTLSEARDADLLL 270


>gi|170584925|ref|XP_001897241.1| hypothetical protein [Brugia malayi]
 gi|158595365|gb|EDP33925.1| conserved hypothetical protein [Brugia malayi]
          Length = 614

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 16/116 (13%)

Query: 163 DKLTH-IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
           DK  H  R+ +  ++D SE +      + E+   ILFLK+   +HI       I R  + 
Sbjct: 302 DKHNHSCRTRLSQNIDVSERKIPIIHCAAEL---ILFLKS--RAHI-------IERRPFV 349

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++G+ N GKSS  N L  +    V+  PG TR + T+ +D E   + + D  G+
Sbjct: 350 VGMVGYPNVGKSSTINKLLDRKKVSVSATPGKTRHLQTLVVDEE---LTLCDCPGL 402


>gi|157693029|ref|YP_001487491.1| GTP-binding protein Era [Bacillus pumilus SAFR-032]
 gi|157681787|gb|ABV62931.1| GTPase [Bacillus pumilus SAFR-032]
          Length = 301

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +   L          D
Sbjct: 4   ESFKSGF-VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNSSQTIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T GI +    +    +K     ++  DLIL +  IN+K+
Sbjct: 63  TPGIHKPKHKLGDFMMKVAQNTLKEVDLILFM--INAKE 99


>gi|57236971|ref|YP_178772.1| GTP-binding protein Era [Campylobacter jejuni RM1221]
 gi|81353813|sp|Q5HVB3|ERA_CAMJR RecName: Full=GTPase Era
 gi|57165775|gb|AAW34554.1| GTP-binding protein Era [Campylobacter jejuni RM1221]
 gi|315058076|gb|ADT72405.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni S3]
          Length = 291

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           G+ E+   + +  ++     + + D+IL +  +
Sbjct: 60  GLHESGATLNQLLVQSAIKSMGDCDVILFVASV 92


>gi|299768754|ref|YP_003730780.1| GTP-binding proten HflX [Acinetobacter sp. DR1]
 gi|298698842|gb|ADI89407.1| GTP-binding proten HflX [Acinetobacter sp. DR1]
          Length = 447

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 29/189 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           + ++G++NAGKS+LFN LAK DV     +  T    L  ++ D  G +V ++DT G +R 
Sbjct: 202 VSLVGYTNAGKSTLFNILAKSDVYAADQLFATLDPTLRRLEWDGIGTVV-LADTVGFVRN 260

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYT 336
              D++  E  K T  E   A L+L + + NS   +   + ++ +   IG  + +   Y 
Sbjct: 261 LQHDLI--ESFKATLEETLEATLLLHVIDSNSHDMLDQIEAVEGVLKEIGADAPVLRVYN 318

Query: 337 ------EEYD------HL-----ISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSH-- 376
                 EE        H+     +S+  G GLE L   ++  L  + +K    + P++  
Sbjct: 319 KIDLSGEEAKIVYAEPHVPDRVYVSAHAGLGLELLQKAVQECLMGQIQKFSLILKPAYGK 378

Query: 377 -KRHLYHLS 384
            +  LY L+
Sbjct: 379 FRTQLYALN 387


>gi|289662674|ref|ZP_06484255.1| GTP-binding protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669638|ref|ZP_06490713.1| GTP-binding protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 439

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE 279
           +I ++G++NAGKS+LFNAL   + A V D    T D     + L G    ++DT G +R+
Sbjct: 200 RIALVGYTNAGKSTLFNALTGAE-AYVADQLFATLDPTVRRIALPGGSAILADTVGFVRD 258

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL 303
              ++V     + T  E  +ADL+L
Sbjct: 259 LPHELV--AAFRSTLSEARDADLLL 281


>gi|217076882|ref|YP_002334598.1| GTP-binding protein [Thermosipho africanus TCF52B]
 gi|217036735|gb|ACJ75257.1| GTP-binding protein [Thermosipho africanus TCF52B]
          Length = 258

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 13/101 (12%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           + S+   V  FS KE +  I   K  I ++ S+ KL E      +I+I G  N GKSS+ 
Sbjct: 70  EISKTNPVITFSKKESVEKI---KKFIKTY-SKEKLKET-----RILIAGVPNVGKSSII 120

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N ++ + +A     PG TR +  I+L      VK+ DT GI
Sbjct: 121 NKVSGRKLAKTGMAPGITRGLQWINLG----KVKLLDTPGI 157


>gi|206901501|ref|YP_002250803.1| GTPase [Dictyoglomus thermophilum H-6-12]
 gi|206740604|gb|ACI19662.1| GTPase [Dictyoglomus thermophilum H-6-12]
          Length = 405

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 25/203 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG 276
           N  ++ ++G++NAGKS+LFN L   +V +V D+   T D     ++    + V ISDT G
Sbjct: 184 NLPQVALVGYTNAGKSTLFNLLTGANV-LVEDLLFATLDPTVRKINFRNNWEVLISDTVG 242

Query: 277 -IRETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPKNI---------DFI 323
            IR   + +     + T  E+   DLIL + ++   N +K+I   +++           I
Sbjct: 243 FIRNLPEEL-LTAFRATLEEIYYVDLILHVIDVSDKNFRKQIEVVESVLEEMGIEEKPII 301

Query: 324 FIGTKSDLYST-----YTEEYDHLISSFTGE----GLEELINKIKSILSNKFKKLPFSIP 374
            +  K DL +        +E D+  S F       G+E L + I S L    ++   +IP
Sbjct: 302 RVYNKIDLLTKEEIRYLRQELDYRPSVFISAKERIGIERLKDLIVSELLKGVRRYKINIP 361

Query: 375 SHKRHLYHLSQTVRYLEMASLNE 397
             K +++   +   Y+E  +  E
Sbjct: 362 YDKYNVFQKYKGKLYIEEENYRE 384


>gi|166030472|ref|ZP_02233301.1| hypothetical protein DORFOR_00133 [Dorea formicigenerans ATCC
           27755]
 gi|166029724|gb|EDR48481.1| hypothetical protein DORFOR_00133 [Dorea formicigenerans ATCC
           27755]
          Length = 728

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 12/90 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VKISD 273
           G KI + G+ N+GK++LFNAL   +   V + PG T +        EG       V I D
Sbjct: 2   GVKIALAGNPNSGKTTLFNALTGSN-QFVGNWPGVTVE------KKEGKWKEDKEVVIMD 54

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLIL 303
             GI        +E + R +L  E  D IL
Sbjct: 55  LPGIYSLSPYTLEEVVARNYLITERPDAIL 84


>gi|13358157|ref|NP_078431.1| ATP/GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170761881|ref|YP_001752677.1| GTPase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171920381|ref|ZP_02931709.1| GTPase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508648|ref|ZP_02958147.1| GTPase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701611|ref|ZP_02971317.1| GTPase [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|11356762|pir||D82870 conserved hypothetical ATP/GTP-binding protein UU592 [imported] -
           Ureaplasma urealyticum
 gi|6899603|gb|AAF31006.1|AE002158_4 conserved hypothetical ATP/GTP-binding protein [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827458|gb|ACA32720.1| GTPase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902815|gb|EDT49104.1| GTPase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182676115|gb|EDT88020.1| GTPase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186700841|gb|EDU19123.1| GTPase [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 273

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +I+G  N GKSSL N LA K V  V + PG T+      ++   YL+   DT GI
Sbjct: 120 MIIGLPNIGKSSLINFLAPKKVLKVENRPGVTKTQCIRQINQHFYLI---DTPGI 171


>gi|323144163|ref|ZP_08078799.1| ribosome biogenesis GTPase Era [Succinatimonas hippei YIT 12066]
 gi|322416071|gb|EFY06769.1| ribosome biogenesis GTPase Era [Succinatimonas hippei YIT 12066]
          Length = 301

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L N L  + V+I +  P TTR+ VL ID   E Y     DT G+ + 
Sbjct: 10  VALIGRPNVGKSTLMNHLIGQKVSITSRRPQTTRNRVLGIDTQGE-YQAVFVDTPGLHKE 68

Query: 281 DDIVEKEGIKR 291
               EK  I R
Sbjct: 69  ----EKRAINR 75


>gi|300784296|ref|YP_003764587.1| GTP-binding protein HflX [Amycolatopsis mediterranei U32]
 gi|299793810|gb|ADJ44185.1| GTP-binding protein HflX [Amycolatopsis mediterranei U32]
          Length = 482

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 85/207 (41%), Gaps = 36/207 (17%)

Query: 199 LKNDISS--HISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIP 251
           L+ +I++   I + K G  + N    + I+G++NAGKSSL NAL    V    A+   + 
Sbjct: 231 LRREIAAMDTIRETKRGRRLANEVPSVAIVGYTNAGKSSLLNALTGAGVLVEDALFATLD 290

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL------- 303
            TTR   T D    G    ++DT G +R     +  +  + T  E  +ADL++       
Sbjct: 291 PTTRRAQTPD----GRGYTLTDTVGFVRHLPHQL-VDAFRSTLEEAADADLLVHVVDGSD 345

Query: 304 ------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSFT 347
                       +L EI  K++   P  +  I     SD  S     +       +S+ T
Sbjct: 346 PAPEEQVSAVREVLGEITRKRKEPLPPELLVINKTDASDEVSLARLRHALAGSVQVSART 405

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIP 374
           G G+ EL+  I   L      +   +P
Sbjct: 406 GAGIAELVEVIADRLPRPEVTVDVLVP 432


>gi|262280231|ref|ZP_06058015.1| GTPase [Acinetobacter calcoaceticus RUH2202]
 gi|262258009|gb|EEY76743.1| GTPase [Acinetobacter calcoaceticus RUH2202]
          Length = 258

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL--------DLEGY 267
           +GY+I   G SNAGKSS  NAL  +K +A  +  PG T+ +    L        DL GY
Sbjct: 60  SGYEIAFAGRSNAGKSSAINALTNQKQLARASKKPGRTQMINFFSLGNPDQRLVDLPGY 118


>gi|261405616|ref|YP_003241857.1| GTP-binding protein Era [Paenibacillus sp. Y412MC10]
 gi|261282079|gb|ACX64050.1| GTP-binding protein Era [Paenibacillus sp. Y412MC10]
          Length = 300

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + I+G  N GKS+L N +  + +AI++D P TTR+
Sbjct: 11  VAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRN 45


>gi|227112484|ref|ZP_03826140.1| ATP/GTP-binding protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 291

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L +DI+  I   +L ++I     I ++G S AGKSSL N L     A V  + G TR + 
Sbjct: 18  LPDDIAGRICY-QLDKVIYYAPVIGLMGKSGAGKSSLCNTLFSPPPAKVDAVNGCTRRIQ 76

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE-VENADLILLL 305
              +  + + + + D  G+ ET  +   +   R + E  E  DLI+ +
Sbjct: 77  RYQVSYKLHTLSLIDFPGVGETPGL--DKVYSRLYQEWAEKLDLIIWV 122


>gi|209523770|ref|ZP_03272323.1| GTP-binding protein HSR1-related [Arthrospira maxima CS-328]
 gi|209495802|gb|EDZ96104.1| GTP-binding protein HSR1-related [Arthrospira maxima CS-328]
          Length = 639

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 24/167 (14%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           +M R ++++ +S +  +LYG     LT + +  E +L  ++ + +Q   S+         
Sbjct: 236 QMMREVALQNLSRQAIALYGGEQIPLTAL-TVTEENLPQAQTQTLQEIISQA-------- 286

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             D    + Q  +         I+++G + +GKSSL N L + ++A V  +P T R    
Sbjct: 287 --DPPEKVEQKPVS--------ILLVGRTGSGKSSLINTLFQANLAEVDVLPSTDRIKNY 336

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL-EVENADLILLL 305
                 G  + + DT G  +    V++E ++   + E + ADL+LL+
Sbjct: 337 HWSTPTGESLNLWDTPGYEQ----VKREDLRELVVSEAQTADLLLLV 379


>gi|78184833|ref|YP_377268.1| hypothetical protein Syncc9902_1260 [Synechococcus sp. CC9902]
 gi|78169127|gb|ABB26224.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 529

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 100/217 (46%), Gaps = 26/217 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKI 271
           E+ R    +V+ G  ++GK+SL  AL +K V  V    G T++  +  L L+G    +++
Sbjct: 125 ELQRGDLVVVVFGTGSSGKTSLIRALLQKMVGDVGAPMGLTKETRSYRLRLKGLNRGLQL 184

Query: 272 SDTAGIRET-DDIVEKEGIKRTFLEVENADLILLLKEINSK-KEISFPKNI-----DFIF 324
            DT GI E  DD + +E   R       ADL+L++ + + +  E++  ++I       + 
Sbjct: 185 VDTPGILEAGDDGLSREDQARR--RAIRADLLLVVVDGDLRASELAVVRSIADLGKRLLL 242

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN----KFKKLPFSIPSH-KRH 379
           +  K DL     E+          + L+ L ++   +LSN         P SIP   +R 
Sbjct: 243 VLNKRDLRGVDEEK----------QLLQVLRSRCTGLLSNADVLACSAAPQSIPQPGRRP 292

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           L      +  ++  ++  +  G ++IA+N+ L   +L
Sbjct: 293 LQPKPDVMDLMQRLAVVLQAEGEELIADNILLQCRNL 329


>gi|71280742|ref|YP_270776.1| GTP-binding protein Era [Colwellia psychrerythraea 34H]
 gi|71146482|gb|AAZ26955.1| GTP-binding protein Era [Colwellia psychrerythraea 34H]
          Length = 305

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +  P TTR  +   L  E     + DT G+    
Sbjct: 13  IAIVGRPNVGKSTLLNALLGQKISITSKKPQTTRHRILGILTEENRQAVLVDTPGLHTE- 71

Query: 282 DIVEKEGIKR 291
              EK  I R
Sbjct: 72  ---EKRAINR 78


>gi|56707761|ref|YP_169657.1| ribosome biogenesis GTP-binding protein YsxC [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670232|ref|YP_666789.1| ribosome biogenesis GTP-binding protein YsxC [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456831|ref|ZP_03665304.1| GTPase EngB [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254370264|ref|ZP_04986269.1| ATP/GTP-binding protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874574|ref|ZP_05247284.1| GTP-binding protein engB [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|81597736|sp|Q5NH35|ENGB_FRATT RecName: Full=Probable GTP-binding protein EngB
 gi|119369196|sp|Q14II7|ENGB_FRAT1 RecName: Full=Probable GTP-binding protein EngB
 gi|56604253|emb|CAG45269.1| ATP/GTP-binding protein [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320565|emb|CAL08652.1| ATP/GTP-binding protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568507|gb|EDN34161.1| ATP/GTP-binding protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840573|gb|EET19009.1| GTP-binding protein engB [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158932|gb|ADA78323.1| GTPase EngB [Francisella tularensis subsp. tularensis NE061598]
          Length = 197

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 18/143 (12%)

Query: 219 GYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL-------DLEGY-LV 269
           G ++   G SNAGKSS  N L  +K +A V+  PG T+ +   DL       DL GY   
Sbjct: 23  GVEVAFAGRSNAGKSSALNTLTDQKGLARVSKTPGRTQLINLFDLGNNNRLVDLPGYGYA 82

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLE--VENADLILLLKEINS---KKEISFPKNIDFIF 324
           K+S++   R+    +E     R  L   V   DL   LKE +S   +  ISF  N+  + 
Sbjct: 83  KVSESIK-RQWQSEMENYLTSRKCLNGIVLLVDLRHELKEFDSLMIEMAISFDLNLHILL 141

Query: 325 IGTKSD-LYSTYTEEYDHLISSF 346
             TK+D L +    + + +I SF
Sbjct: 142 --TKADKLNNKERAQANRMIESF 162


>gi|291543062|emb|CBL16172.1| GTP-binding protein HflX [Ruminococcus bromii L2-63]
          Length = 416

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 22/170 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI--RET 280
           I+G++NAGKS+L N L    V +  D    T D  +  L L  G  V + DT G+  R  
Sbjct: 204 IVGYTNAGKSTLMNCLTDAGV-LAQDKLFATLDPTSRALKLPSGVTVMMIDTVGLVRRLP 262

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTK 328
             +VE    + T  E   +D+IL + + +S +  +  +            +   I +  K
Sbjct: 263 HHLVE--AFRSTLEEAAQSDIILNVCDASSDEARTHMQVTTDLLESLGCGDTPIITVLNK 320

Query: 329 SDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            DL        D      IS+  G G++EL+N I++ L  + K++   +P
Sbjct: 321 CDLLDETMLAQDFKACVRISAKNGTGIDELLNAIENNLPVRMKRVKILLP 370


>gi|260591203|ref|ZP_05856661.1| GTP-binding protein Era [Prevotella veroralis F0319]
 gi|260537068|gb|EEX19685.1| GTP-binding protein Era [Prevotella veroralis F0319]
          Length = 293

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTDDSQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  ++ +   + +AD++L + ++    E    KN+DF+
Sbjct: 69  MQEMMLQFSESALADADILLYVTDVVENPE----KNMDFL 104


>gi|330806701|ref|YP_004351163.1| GTP-binding protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|253559452|gb|ACT32413.1| putative GTP-binding protein EngB [Pseudomonas fluorescens]
 gi|327374809|gb|AEA66159.1| Putative GTP-binding protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 213

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ N IL L    +  +S  K+ +   + G+++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QLKNPILGLCQQSTFMLSAAKVDQCPDDEGFEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTRDVLTIDLDLEGYLVKI 271
            PG T+ +    LD E  LV +
Sbjct: 62  TPGRTQLLNFFKLDDERRLVDL 83


>gi|255087758|ref|XP_002505802.1| predicted protein [Micromonas sp. RCC299]
 gi|226521072|gb|ACO67060.1| predicted protein [Micromonas sp. RCC299]
          Length = 531

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 11/58 (18%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR-----DVLTID-----LDLEGY 267
           ++ ++G SN GKSSL N L  +KD+A  +  PG TR     +++T D     +DL GY
Sbjct: 323 EVAVIGRSNVGKSSLVNMLTNRKDIAKTSKNPGKTRTINHFEMITGDGTWYFVDLPGY 380


>gi|269864219|ref|XP_002651496.1| GTPase, predicted [Enterocytozoon bieneusi H348]
 gi|220064416|gb|EED42560.1| GTPase, predicted [Enterocytozoon bieneusi H348]
          Length = 377

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I  +G+ N GKSSL N L  K V  V  IPG T+    I L  + YL+   D+ G+
Sbjct: 272 IGFVGYPNIGKSSLINILKNKQVCKVAPIPGETKVWQYITLMKDVYLI---DSPGV 324


>gi|148651985|ref|YP_001279078.1| ribosomal biogenesis GTPase [Psychrobacter sp. PRwf-1]
 gi|148571069|gb|ABQ93128.1| GTP-binding protein, HSR1-related [Psychrobacter sp. PRwf-1]
          Length = 323

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 18/117 (15%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
           WI++L           D ++  DV+          I   K+ I + +  G+         
Sbjct: 80  WIEQLEQQSQVKAIACDDNKANDVKRI--------IQMCKDLIPNKVGTGR-------QI 124

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           K++I+G  N GKS+L N LA + +A   D P  T+    I +D +   + + DT G+
Sbjct: 125 KVLIMGIPNVGKSTLINTLAGRSIARTGDEPAVTKSQQLIKIDDD---IMLYDTPGM 178


>gi|330998173|ref|ZP_08321999.1| GTP-binding protein HflX [Paraprevotella xylaniphila YIT 11841]
 gi|329568865|gb|EGG50663.1| GTP-binding protein HflX [Paraprevotella xylaniphila YIT 11841]
          Length = 419

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 22/128 (17%)

Query: 192 VLNDILFLKN-----DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-- 244
           +LN +  LK      D      +   G +IR    + ++G++N GKS+L N L+K DV  
Sbjct: 187 ILNRMSLLKQRLAEIDRQKTTQRSNRGRMIR----VALVGYTNVGKSTLMNLLSKSDVFA 242

Query: 245 --AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300
              +   +  T R V+  +L    +L  +SDT G IR+   D+V  +  K T  EV  AD
Sbjct: 243 ENKLFATLDTTVRKVIIDNL---PFL--LSDTVGFIRKLPTDLV--DSFKSTLDEVREAD 295

Query: 301 LILLLKEI 308
           L+L + +I
Sbjct: 296 LLLHVVDI 303


>gi|309777994|ref|ZP_07672936.1| GTP-binding protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914283|gb|EFP60081.1| GTP-binding protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 397

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 14/108 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG---- 276
           I I G  N+GKS+L N +  + ++ V+ I GTT D +   ++L G   V   DTAG    
Sbjct: 14  IGIFGKRNSGKSTLLNTITGQKISTVSPIAGTTTDPVIKAMELHGLGPVVFYDTAGFDDE 73

Query: 277 -------IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
                  + +T +I++K  +    L   + D+   ++  ++ KE   P
Sbjct: 74  GELGALRVEKTKEIIQKTDM--AILVFRDPDISWEMEWYDALKEKKIP 119


>gi|291541888|emb|CBL14998.1| iron-only hydrogenase maturation protein HydF [Ruminococcus bromii
           L2-63]
          Length = 391

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAG 276
            G  NAGKSS+ NA+  +++++V+D  GTT D +  T++L   G +V I DTAG
Sbjct: 17  FGRRNAGKSSVVNAVTNQNMSLVSDKKGTTTDPVEKTMELLPLGPVV-IIDTAG 69


>gi|289624644|ref|ZP_06457598.1| hypothetical protein PsyrpaN_05807 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648483|ref|ZP_06479826.1| hypothetical protein Psyrpa2_12126 [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330871144|gb|EGH05853.1| hypothetical protein PSYAE_28593 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 462

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  LV + DT G+
Sbjct: 11  KLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVDGQALVDLYDTPGL 69


>gi|254527127|ref|ZP_05139179.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9202]
 gi|221538551|gb|EEE41004.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9202]
          Length = 303

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + +LG  N GKS+L N L  + + I + +  TTR+ L   L  E   +   DT G
Sbjct: 5   RSGF-VTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNKLKGILTTENGQIIFVDTPG 63

Query: 277 IRE 279
           + +
Sbjct: 64  VHK 66


>gi|157414937|ref|YP_001482193.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 81116]
 gi|189037256|sp|A8FL79|ERA_CAMJ8 RecName: Full=GTPase Era
 gi|157385901|gb|ABV52216.1| GTP-binding protein ERA-like protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747576|gb|ADN90846.1| GTP-binding protein era-like protein [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931858|gb|EFV10813.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 327]
          Length = 291

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           G+ E+   + +  ++     + + D+IL +  +
Sbjct: 60  GLHESGATLNQLLVQSAIKSMGDCDVILFVASV 92


>gi|118594970|ref|ZP_01552317.1| GTP-binding protein, HSR1-related [Methylophilales bacterium
           HTCC2181]
 gi|118440748|gb|EAV47375.1| GTP-binding protein, HSR1-related [Methylophilales bacterium
           HTCC2181]
          Length = 373

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG 276
           N   + I+G++NAGKS+LFN L  + + +  D    T D  +  L LE  + + ISDT G
Sbjct: 197 NVLTVSIVGYTNAGKSTLFNTLTHEKI-LAEDKLFATLDTTSRKLFLEPNHKLVISDTVG 255

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI--NSKKE 313
             +       E  K T  E  ++DL++ + ++  N+K E
Sbjct: 256 FIKNLPTTLVEAFKSTLEEATDSDLLIHVVDVSNNNKSE 294


>gi|118467125|ref|YP_881248.1| GTP-binding protein Era [Mycobacterium avium 104]
 gi|189037653|sp|A0QEB0|ERA_MYCA1 RecName: Full=GTPase Era
 gi|118168412|gb|ABK69309.1| GTP-binding protein Era [Mycobacterium avium 104]
          Length = 299

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    VAI +  P TTR  +   +  + + + + DT G
Sbjct: 5   RSGF-VCLVGRPNTGKSTLTNALVGTKVAITSMRPQTTRHTIRGIVHRDDFQIILVDTPG 63

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ K   + ++ T+ EV+
Sbjct: 64  LHRPRTLLGKRLNDLVRDTYAEVD 87


>gi|54113475|gb|AAV29371.1| NT02FT0759 [synthetic construct]
          Length = 197

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 18/143 (12%)

Query: 219 GYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL-------DLEGY-LV 269
           G ++   G SNAGKSS  N L  +K +A V+  PG T+ +   DL       DL GY   
Sbjct: 23  GVEVAFAGRSNAGKSSALNTLTDQKGLARVSKTPGRTQLINLFDLGNNNRLVDLPGYGYA 82

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLE--VENADLILLLKEINS---KKEISFPKNIDFIF 324
           K+S++   R+    +E     R  L   V   DL   LKE +S   +  ISF  N+  + 
Sbjct: 83  KVSESIK-RQWQSEMENYLTSRKCLNGIVLLVDLRHELKEFDSLMIEMAISFDLNLHILL 141

Query: 325 IGTKSD-LYSTYTEEYDHLISSF 346
             TK+D L +    + + +I SF
Sbjct: 142 --TKADKLNNKERAQANRMIESF 162


>gi|58582568|ref|YP_201584.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624454|ref|YP_451826.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58427162|gb|AAW76199.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368394|dbj|BAE69552.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 439

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE 279
           +I ++G++NAGKS+LFNAL   + A V D    T D     + L G    ++DT G +R+
Sbjct: 200 RIALVGYTNAGKSTLFNALTGAE-AYVADQLFATLDPTVRRIALPGGSAILADTVGFVRD 258

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL 303
              ++V     + T  E  +ADL+L
Sbjct: 259 LPHELV--AAFRSTLSEARDADLLL 281


>gi|325286475|ref|YP_004262265.1| GTP-binding proten HflX [Cellulophaga lytica DSM 7489]
 gi|324321929|gb|ADY29394.1| GTP-binding proten HflX [Cellulophaga lytica DSM 7489]
          Length = 403

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTR 255
           K D      +G  G ++R    + ++G++N GKS+L N ++K DV     +   +  T R
Sbjct: 184 KIDRQMETQRGNRGALVR----VALVGYTNVGKSTLMNVVSKSDVFAEDKLFATLDTTVR 239

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
            V+  +L        +SDT G          E  K T  EV  ADL+L + +I+
Sbjct: 240 KVVLGNLPF-----LLSDTVGFIRKLPTQLVESFKSTLDEVREADLLLHIVDIS 288


>gi|320326385|gb|EFW82438.1| hypothetical protein PsgB076_02211 [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331625|gb|EFW87563.1| hypothetical protein PsgRace4_01055 [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330872348|gb|EGH06497.1| hypothetical protein Pgy4_02315 [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 462

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  LV + DT G+
Sbjct: 11  KLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVDGQALVDLYDTPGL 69


>gi|284162668|ref|YP_003401291.1| small GTP-binding protein [Archaeoglobus profundus DSM 5631]
 gi|284012665|gb|ADB58618.1| small GTP-binding protein [Archaeoglobus profundus DSM 5631]
          Length = 304

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 79/154 (51%), Gaps = 20/154 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           +V+ G+ N GKSS    ++     I +  P TT+ +    ++LE G  ++I DT G+   
Sbjct: 156 VVVAGYPNVGKSSFVAKVSTVKPEIAS-YPFTTKSIHVGYIELERGKRIQIIDTPGL--L 212

Query: 281 DDIVEKEG-IKRTFL----EVENADLILLLKEINSKKEISFPK------NIDFIFIGTKS 329
           D  +EK   I+R  +     V N  L ++   ++ K ++   +      ++  I + +K+
Sbjct: 213 DRPLEKRNEIERKAILCLKHVANCILFIIDPTMDLKPQMKLLEEIKENFDVPVIVVYSKA 272

Query: 330 DLYSTYTEEYD-HLISSFTGEGLEELINKIKSIL 362
           DL+    ++ D    SS TGEG+E+++ +I+ +L
Sbjct: 273 DLH----DKRDLPAFSSVTGEGIEDVLKRIREVL 302


>gi|228907757|ref|ZP_04071611.1| GTPase [Bacillus thuringiensis IBL 200]
 gi|228851845|gb|EEM96645.1| GTPase [Bacillus thuringiensis IBL 200]
          Length = 349

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRDVLTIDL 262
           L + + +G  I ++G S  GKS+L NAL   DVA   DI           T R++  +  
Sbjct: 186 LQQFVSSGKTIALVGSSGVGKSTLLNALIGIDVAKTGDIREEDSRGRHTTTHRELFQLP- 244

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
              G LV   DT G+RE       E I+ TF ++E
Sbjct: 245 --SGALV--IDTPGMRELQLWEGSEAIQTTFSDIE 275


>gi|330985896|gb|EGH83999.1| hypothetical protein PLA107_12820 [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 462

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  LV + DT G+
Sbjct: 11  KLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVDGQALVDLYDTPGL 69


>gi|322435231|ref|YP_004217443.1| ribosome biogenesis GTP-binding protein YsxC [Acidobacterium sp.
           MP5ACTX9]
 gi|321162958|gb|ADW68663.1| ribosome biogenesis GTP-binding protein YsxC [Acidobacterium sp.
           MP5ACTX9]
          Length = 203

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 22/40 (55%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           N  +I  LG SN GKSSL NAL     A  +  PG TR +
Sbjct: 25  NAPEIAFLGRSNVGKSSLINALLGSKQAHTSSTPGRTRAI 64


>gi|317499960|ref|ZP_07958196.1| ribosome biogenesis GTP-binding protein YsxC [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316898677|gb|EFV20712.1| ribosome biogenesis GTP-binding protein YsxC [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 202

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++   G SN GKSSL NAL  +K  A ++  PG T+ +   +++ E YLV +      R 
Sbjct: 25  EVAFAGKSNVGKSSLINALMNRKSYARISATPGKTQTINFYNINDEMYLVDLPGYGYARV 84

Query: 280 TDDIVEKEG--IKRTFLEVENADLILLLKEI 308
           ++   E+ G  I+R     +    + LL +I
Sbjct: 85  SEKEKEQWGRMIERYLHSSKQLKAVFLLIDI 115


>gi|299768659|ref|YP_003730685.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter sp.
           DR1]
 gi|298698747|gb|ADI89312.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter sp.
           DR1]
          Length = 258

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 11/75 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR----------DVLTIDLDLEG 266
           +GY+I   G SNAGKSS  NAL  +K +A  +  PG T+          D   +DL   G
Sbjct: 60  SGYEIAFAGRSNAGKSSAINALTNQKQLARASKKPGRTQMINFFSLGNPDQRLVDLPGYG 119

Query: 267 YLVKISDTAGIRETD 281
           Y     D   + + +
Sbjct: 120 YAAVPEDMKKVWQKE 134


>gi|228953980|ref|ZP_04116010.1| hypothetical protein bthur0006_33530 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805702|gb|EEM52291.1| hypothetical protein bthur0006_33530 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 424

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QGLPTSLIAAFRSTLEEAGEADVIL 280


>gi|227544911|ref|ZP_03974960.1| GTP-binding protein Era [Lactobacillus reuteri CF48-3A]
 gi|300910062|ref|ZP_07127522.1| GTP-binding protein Era [Lactobacillus reuteri SD2112]
 gi|227185123|gb|EEI65194.1| GTP-binding protein Era [Lactobacillus reuteri CF48-3A]
 gi|300892710|gb|EFK86070.1| GTP-binding protein Era [Lactobacillus reuteri SD2112]
          Length = 301

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 37/196 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N +  + VAI++++  TTR+ +  I    E  ++ I DT GI + 
Sbjct: 11  VAIIGRPNVGKSTLLNYVVGQKVAIMSNVAQTTRNKIQGIYTSPEAQIIFI-DTPGIHKP 69

Query: 281 D----DIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFP-----KN 319
                D +EK  +      ++  D +L +     K            K+++ P       
Sbjct: 70  STKLGDFMEKSAMS----ALDEVDAVLFVVSATEKRGPGDDFIIERLKKVNQPIFLVVNK 125

Query: 320 IDFIFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           ID I     +DL     +  D L       IS+  G  +  LIN I  IL N  +  P  
Sbjct: 126 IDQI---NPNDLPEIVDQYKDTLPFKGIVPISALQGNNVNNLINDIIKILPNGPQYYPAD 182

Query: 373 IPSHKRHLYHLSQTVR 388
             S     + +++ +R
Sbjct: 183 QVSDHPERFVIAEMIR 198


>gi|164663127|ref|XP_001732685.1| hypothetical protein MGL_0460 [Malassezia globosa CBS 7966]
 gi|159106588|gb|EDP45471.1| hypothetical protein MGL_0460 [Malassezia globosa CBS 7966]
          Length = 709

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  GI
Sbjct: 338 IGFVGYPNVGKSSIINTLKKKKVCNVAPIPGETKVWQYITLMRRIYLI---DCPGI 390


>gi|71736417|ref|YP_276869.1| hypothetical protein PSPPH_4769 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556970|gb|AAZ36181.1| conserved hypothetical protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 462

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  LV + DT G+
Sbjct: 11  KLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVDGQALVDLYDTPGL 69


>gi|15617031|ref|NP_240244.1| GTPase EngB [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219681783|ref|YP_002468169.1| hypothetical GTP-binding protein [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682338|ref|YP_002468722.1| hypothetical GTP-binding protein [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471485|ref|ZP_05635484.1| ribosome biogenesis GTP-binding protein YsxC [Buchnera aphidicola
           str. LSR1 (Acyrthosiphon pisum)]
 gi|12644609|sp|P57507|ENGB_BUCAI RecName: Full=Probable GTP-binding protein EngB
 gi|254783188|sp|B8D9L0|ENGB_BUCA5 RecName: Full=Probable GTP-binding protein EngB
 gi|254783189|sp|B8D7W2|ENGB_BUCAT RecName: Full=Probable GTP-binding protein EngB
 gi|25306610|pir||B84980 hypothetical GTP-binding protein [imported] - Buchnera sp.  (strain
           APS)
 gi|10039096|dbj|BAB13130.1| hypothetical GTP-binding protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219622071|gb|ACL30227.1| hypothetical GTP-binding protein [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624626|gb|ACL30781.1| hypothetical GTP-binding protein [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086163|gb|ADP66245.1| ribosome biogenesis GTP-binding protein YsxC [Buchnera aphidicola
           str. LL01 (Acyrthosiphon pisum)]
 gi|311086735|gb|ADP66816.1| ribosome biogenesis GTP-binding protein YsxC [Buchnera aphidicola
           str. TLW03 (Acyrthosiphon pisum)]
 gi|311087323|gb|ADP67403.1| ribosome biogenesis GTP-binding protein YsxC [Buchnera aphidicola
           str. JF99 (Acyrthosiphon pisum)]
          Length = 205

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 208 SQGKLGEI-IRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR 255
           S  K+ +I I+NG +I  +G+SN GKSS  NAL  +K +A  +  PG T+
Sbjct: 14  SYSKITDIDIQNGIEIAFIGYSNTGKSSAINALTNQKKLARFSKTPGRTQ 63


>gi|19553483|ref|NP_601485.1| GTP-binding protein Era [Corynebacterium glutamicum ATCC 13032]
 gi|25008421|sp|Q8NNB9|ERA_CORGL RecName: Full=GTPase Era
 gi|21325056|dbj|BAB99678.1| GTPases [Corynebacterium glutamicum ATCC 13032]
          Length = 305

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI  + P TTR  +   +  +   + + DT G
Sbjct: 11  RSGF-VSFVGRPNTGKSTLTNALVGEKIAITANQPETTRHPIRGLVHRDNAQIIVVDTPG 69

Query: 277 IRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK 311
           +     ++ +   E +K T+ +V   DLI      N K
Sbjct: 70  LHRPRTLLGERLNEAVKDTYADV---DLIGFTVPANEK 104


>gi|71401427|ref|XP_803363.1| GTPase [Trypanosoma cruzi strain CL Brener]
 gi|70866303|gb|EAN81917.1| GTPase, putative [Trypanosoma cruzi]
          Length = 277

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
           SN GKSSL N L +K V  V  IPG T+    + L    +L+        RET++ V  +
Sbjct: 2   SNVGKSSLINTLRRKSVCKVAPIPGETKVWQYVALTKTIFLIDCPGVIYDRETNNDV--Q 59

Query: 288 GIKRTFLEVENADLILLLKEINSKKEISFPKNI 320
            + +  + VE    +     +N+  EI  PK+I
Sbjct: 60  AVLKGVVRVERLGNVDKTDVVNTVLEIVKPKDI 92


>gi|331242941|ref|XP_003334115.1| nucleolar GTP-binding protein 2 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309313105|gb|EFP89696.1| nucleolar GTP-binding protein 2 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 726

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 342 RKQISVGFIGYPNVGKSSIINTLKKKKVCNVAPIPGETKVWQYITLMRRIYLI---DCPG 398

Query: 277 I 277
           I
Sbjct: 399 I 399


>gi|260427039|ref|ZP_05781018.1| ribosome biogenesis GTP-binding protein YsxC [Citreicella sp. SE45]
 gi|260421531|gb|EEX14782.1| ribosome biogenesis GTP-binding protein YsxC [Citreicella sp. SE45]
          Length = 217

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           ++   G SN GKSSL NAL  +K +A  ++ PG T+++    L  E YLV +
Sbjct: 47  EVCFAGRSNVGKSSLINALTGRKALARASNTPGRTQEINFFTLGEERYLVDL 98


>gi|255657304|ref|ZP_05402713.1| putative GTPase [Clostridium difficile QCD-23m63]
 gi|296451845|ref|ZP_06893564.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
           NAP08]
 gi|296879759|ref|ZP_06903733.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
           NAP07]
 gi|296259324|gb|EFH06200.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
           NAP08]
 gi|296429230|gb|EFH15103.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
           NAP07]
          Length = 355

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 12/95 (12%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNA------LAKKDVAIVTD--IPGTTRDVLTIDL 262
           ++ + I+ GY I +LG S  GKSSL N       L  K++ I  D     TTR  L +  
Sbjct: 191 QISKYIKPGYTIALLGSSGVGKSSLINCLLGGEFLNTKEIRIADDKGRHATTRRELFL-- 248

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            + G  + I DT G+RE       EG+ ++F ++E
Sbjct: 249 -ISGGGIVI-DTPGMRELGMWDVSEGVDKSFADIE 281


>gi|91774588|ref|YP_544344.1| GTPase EngB [Methylobacillus flagellatus KT]
 gi|119369214|sp|Q1H4T4|ENGB_METFK RecName: Full=Probable GTP-binding protein EngB
 gi|91708575|gb|ABE48503.1| cell division checkpoint GTPase YihA [Methylobacillus flagellatus
           KT]
          Length = 207

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 11/73 (15%)

Query: 206 HISQGKLGEI-IRNGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTR-------- 255
           HIS   L ++    G ++V  G SNAGKSS  N LA  + +A V+  PG T+        
Sbjct: 10  HISAHNLSDLPAPAGIEVVFAGRSNAGKSSALNTLANHNRLAFVSKQPGRTQLINFFSLG 69

Query: 256 -DVLTIDLDLEGY 267
            D   +DL   GY
Sbjct: 70  NDRFLVDLPGYGY 82


>gi|66813470|ref|XP_640914.1| small GTPase [Dictyostelium discoideum AX4]
 gi|60468923|gb|EAL66923.1| small GTPase [Dictyostelium discoideum AX4]
          Length = 260

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 32/151 (21%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIRE 279
           I I G    GKSS+     K D +  T    T  D     ++LD E Y ++I DTAG  E
Sbjct: 6   ICISGEPGVGKSSIVQQFVKNDFS--TQYTPTLEDFYNYELNLDEEKYNLEIIDTAGQEE 63

Query: 280 TDD-------------IVEKEGIKRTFLEVEN-ADLILLLKEINSKKEISFPKNIDFIFI 325
             D             IV     K +F EV+N  D I+ +K+          +NI  I +
Sbjct: 64  FCDLKNNYILNGNAFIIVYSICCKGSFKEVKNIMDNIINIKDC---------QNIPIIIV 114

Query: 326 GTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           G K D+     +E +  +S+  G+ L + +N
Sbjct: 115 GNKIDI-----DEKERKVSTLEGKNLAKQLN 140


>gi|303390673|ref|XP_003073567.1| septin [Encephalitozoon intestinalis ATCC 50506]
 gi|303302714|gb|ADM12207.1| septin [Encephalitozoon intestinalis ATCC 50506]
          Length = 267

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 103/251 (41%), Gaps = 48/251 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGI 277
           + I+  G   +GKSS FN L  K+  I+T       D+  ++LD EG + +I+  DT G 
Sbjct: 10  FTIMAAGPKGSGKSSFFNTLIGKE--IITSKGQEGIDLYMLNLDCEGIMQRITLIDTPGF 67

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKE-------------ISFP-K 318
            ET D  E   I+ T      A L + + E      N K E              SF  K
Sbjct: 68  GETFDDTE---IQETICNFIKAQLDMFITEESKIRRNPKYEDTRVHCLLYFIPSTSFGLK 124

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN-KFKKLP------- 370
           N D +F+   S L +        +IS   G  + E I   K ++   K+ K+P       
Sbjct: 125 NRDIVFLKKISGLVNIIP-----VISKADGLSISERIEIKKQVIRQLKYYKIPTFNLDDP 179

Query: 371 --FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428
             +S P+    L  L   V +L +++  E    LD  A N +   VS+     C D+  L
Sbjct: 180 ELYSSPTAGNDLNSL---VPFLIISADGE---NLDSRARNYQWGKVSIDNPEHC-DLPAL 232

Query: 429 LDIIFSKFCIG 439
            +++ S    G
Sbjct: 233 RELLLSTHIYG 243


>gi|317128279|ref|YP_004094561.1| ribosome biogenesis GTPase YqeH [Bacillus cellulosilyticus DSM
           2522]
 gi|315473227|gb|ADU29830.1| ribosome biogenesis GTPase YqeH [Bacillus cellulosilyticus DSM
           2522]
          Length = 372

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 9/67 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKK----DVAIVT--DIPGTTRDVLTIDLDLEGYLVK 270
           R G  + ++G +N GKS+  N L K+    D  ++T  +IPGTT D++ I LD    L  
Sbjct: 162 REGRDVYVVGSTNVGKSTFINRLLKEFGADDEFLITTSNIPGTTLDMIDIPLDDGASLF- 220

Query: 271 ISDTAGI 277
             DT GI
Sbjct: 221 --DTPGI 225


>gi|326204814|ref|ZP_08194668.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
           papyrosolvens DSM 2782]
 gi|325985026|gb|EGD45868.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
           papyrosolvens DSM 2782]
          Length = 292

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +   I  + ++GKL   +R     +++G  N GKSS  N +  +  A+  D PG TR  
Sbjct: 103 LMSEKIERNKAKGKLFTPVRT----MVVGIPNVGKSSFINKIVGRATAVTGDRPGVTRGK 158

Query: 258 LTIDLDLEGYLVKISDTAGI 277
             I ++ E   +++ DT GI
Sbjct: 159 QWIRINSE---IELLDTPGI 175


>gi|227821404|ref|YP_002825374.1| GTP-binding protein Era [Sinorhizobium fredii NGR234]
 gi|227340403|gb|ACP24621.1| GTP-binding protein [Sinorhizobium fredii NGR234]
          Length = 309

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 22/167 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT G
Sbjct: 16  RSGF-VALIGATNAGKSTLVNHLVGAKVSIVSHKVQTTRAIIRGIAIHDNAQIVFMDTPG 74

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPK-----N 319
           I +    +++  +   +   ++AD I+LL +            + + K++  PK      
Sbjct: 75  IFKPRRRLDRAMVTTAWGGAKDADQIVLLIDSERGLRGDAEAILEALKDVPQPKILVLNK 134

Query: 320 IDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELINKIKSIL 362
           ID +       L +   E    E   +IS+  G G ++L++ + + L
Sbjct: 135 IDRVRPEDLLKLAAAANEVVSFERTFMISALNGSGCKDLMDYLATAL 181


>gi|269956972|ref|YP_003326761.1| GTP-binding protein Era [Xylanimonas cellulosilytica DSM 15894]
 gi|269305653|gb|ACZ31203.1| GTP-binding protein Era [Xylanimonas cellulosilytica DSM 15894]
          Length = 319

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+  ++ G  NAGKS+L NAL  + VAI++  P TTR  +   +  +   + + DT G
Sbjct: 11  RSGFACLV-GRPNAGKSTLTNALVGEKVAIMSARPQTTRHTIRGIVHRDDAQLILVDTPG 69

Query: 277 I 277
           +
Sbjct: 70  L 70


>gi|166712458|ref|ZP_02243665.1| GTP-binding protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 439

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE 279
           +I ++G++NAGKS+LFNAL   + A V D    T D     + L G    ++DT G +R+
Sbjct: 200 RIALVGYTNAGKSTLFNALTGAE-AYVADQLFATLDPTVRRIALPGGSAILADTVGFVRD 258

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL 303
              ++V     + T  E  +ADL+L
Sbjct: 259 LPHELV--AAFRSTLSEARDADLLL 281


>gi|154344184|ref|XP_001568036.1| GTPase protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065370|emb|CAM40798.1| putative ras-like small GTPases [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 565

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GKSS+ NAL +K V  V ++PG T     ++L  +   +++ D  G
Sbjct: 301 RKAIVVGVIGYPNVGKSSIINALKRKHVVGVGNMPGFTTGNTEVELRSD---IRVMDCPG 357

Query: 277 I----RETDDIVEKEGIK 290
           +     +  D+V +  I+
Sbjct: 358 VVSPGEDNGDVVLRNAIR 375


>gi|110763899|ref|XP_001119916.1| PREDICTED: nucleostemin 1 [Apis mellifera]
          Length = 573

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++   ++ ++G  N GKSS+ N+L +     V   PG T+ +  + LD +   +K+ D+ 
Sbjct: 258 VKTSIRVGVVGLPNVGKSSVINSLKRSRACNVGSTPGVTKTMQAVQLDSK---IKLLDSP 314

Query: 276 GI 277
           GI
Sbjct: 315 GI 316


>gi|89092189|ref|ZP_01165143.1| hypothetical protein MED92_05238 [Oceanospirillum sp. MED92]
 gi|89083277|gb|EAR62495.1| hypothetical protein MED92_05238 [Oceanospirillum sp. MED92]
          Length = 218

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           G ++   G SNAGKSS  N L     +A  +  PG T+ +   DL+LEG  V++ D  G
Sbjct: 30  GAEVAFAGRSNAGKSSAINTLTNNGKLARTSKTPGRTQLINFFDLNLEG--VRLVDLPG 86


>gi|65321034|ref|ZP_00393993.1| COG2262: GTPases [Bacillus anthracis str. A2012]
          Length = 222

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 66  FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 124

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 125 QDLPTSLIAAFRSTLEEAGEADVIL 149


>gi|86149793|ref|ZP_01068022.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|218562306|ref|YP_002344085.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|13959362|sp|Q9PHL1|ERA_CAMJE RecName: Full=GTPase Era
 gi|85839611|gb|EAQ56871.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|112360012|emb|CAL34802.1| GTP-binding protein Era homolog [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315926778|gb|EFV06152.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 291

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           G+ E+   + +  ++     + + D+IL +  +
Sbjct: 60  GLHESGATLNQLLVQSAIKSMGDCDVILFVASV 92


>gi|297588412|ref|ZP_06947055.1| GTP-binding protein Era [Finegoldia magna ATCC 53516]
 gi|297573785|gb|EFH92506.1| GTP-binding protein Era [Finegoldia magna ATCC 53516]
          Length = 294

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           I ++G SN GKS+L N +  + + I++D P TTR+ + +    E       DT GI+
Sbjct: 7   ISVIGRSNVGKSTLLNRVLGEKLTIISDKPQTTRNKIQLIYTDENMQAIFLDTPGIQ 63


>gi|219112187|ref|XP_002177845.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410730|gb|EEC50659.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 562

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 25/124 (20%)

Query: 184 VQNFSSKEVLNDILFLKNDISSHIS------QGKLGEIIRNGYK---------IVILGHS 228
           V N+ +K  + ++  ++  I+ H S      +G L  ++R   K         + ++G+ 
Sbjct: 281 VPNWVAKRWMGELAAVRPTIAFHASLTNAFGKGALISLLRQFGKLHEDKKQISVGVIGYP 340

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-------DLEGYLVKISDTAGIRETD 281
           N GKSS+ N L  K    V  IPG T+    + L       D  G +V   DTAG  E D
Sbjct: 341 NVGKSSVINTLISKKSCKVAPIPGETKIWQYVTLFKRISLIDCPGVVV---DTAGDTEED 397

Query: 282 DIVE 285
            +++
Sbjct: 398 SVLK 401


>gi|239617320|ref|YP_002940642.1| GTP-binding protein HSR1-related [Kosmotoga olearia TBF 19.5.1]
 gi|239506151|gb|ACR79638.1| GTP-binding protein HSR1-related [Kosmotoga olearia TBF 19.5.1]
          Length = 280

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 211 KLGEIIRNGY---KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           K+  +I++ Y   +I+I+G  N GKS+  N L  K   +V + PG TR V  I +  +  
Sbjct: 96  KVFPLIKSRYAEKRIMIVGIPNVGKSTFINRLKGKKSLVVGNTPGVTRGVQWITVSKQ-- 153

Query: 268 LVKISDTAGI 277
            + + DT GI
Sbjct: 154 -LMVLDTPGI 162


>gi|194467792|ref|ZP_03073778.1| GTP-binding protein Era [Lactobacillus reuteri 100-23]
 gi|194452645|gb|EDX41543.1| GTP-binding protein Era [Lactobacillus reuteri 100-23]
          Length = 301

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 37/196 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N +  + VAI++++  TTR+ +  I    E  ++ I DT GI + 
Sbjct: 11  VAIIGRPNVGKSTLLNYVVGQKVAIMSNVAQTTRNKIQGIYTSPEAQIIFI-DTPGIHKP 69

Query: 281 D----DIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFP-----KN 319
                D +EK  +      ++  D +L +     K            K+++ P       
Sbjct: 70  STKLGDFMEKSAMS----ALDEVDAVLFVVSATEKRGPGDDFIIERLKKVNQPIFLVVNK 125

Query: 320 IDFIFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           ID I     +DL     +  D L       IS+  G  +  LIN I  IL N  +  P  
Sbjct: 126 IDQI---NPNDLPEIVDQYKDTLPFKGVVPISALQGNNVNNLINDIIKILPNGPQYYPAD 182

Query: 373 IPSHKRHLYHLSQTVR 388
             S     + +++ +R
Sbjct: 183 QVSDHPERFVIAEMIR 198


>gi|82701580|ref|YP_411146.1| small GTP-binding protein domain-containing protein [Nitrosospira
           multiformis ATCC 25196]
 gi|82409645|gb|ABB73754.1| GTP-binding protein HflX [Nitrosospira multiformis ATCC 25196]
          Length = 394

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 37/161 (22%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIV----TDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + ++G++NAGKS+LFN L +    +       +  TTR +   D    G LV +SDT G 
Sbjct: 208 VSLVGYTNAGKSTLFNRLTRGHTYVADQLFATLDATTRKLFIAD---RGPLV-LSDTVGF 263

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKK--EIS 315
           IR+    +     + T  E   ADL+L                   +LKEI + +  +I 
Sbjct: 264 IRDLPHTL-VAAFRATLEETVQADLLLHVVDTSSSNRSEQIDEVNKVLKEIGADRIPQIL 322

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLI----SSFTGEGLE 352
                D + +   S  Y    +EY  ++    S+ TGEGLE
Sbjct: 323 VLNKTDLVDLPASSPGYQ--RDEYGRIVQVRLSAKTGEGLE 361


>gi|14590256|ref|NP_142322.1| hypothetical protein PH0344 [Pyrococcus horikoshii OT3]
 gi|3256735|dbj|BAA29418.1| 186aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 186

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 19/101 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-----------TIDLDLEGY-- 267
           K+ I+G  N GKS+L NAL     + V++ PGTT+ ++           T+     G   
Sbjct: 3   KVAIIGAENVGKSTLMNALLGGKFSEVSETPGTTKGIIKRAFGKIKLPKTMKNPFGGADE 62

Query: 268 LVKISDTAGIRETD-----DIVEKEGIKRTFLEVENADLIL 303
           LV I DTAG+ + +      ++ +E  K    E+ NAD+I+
Sbjct: 63  LVLI-DTAGLFDPEKEIRGKVLSEEKFKELIKEIVNADVII 102


>gi|89100814|ref|ZP_01173666.1| GTP-binding protein [Bacillus sp. NRRL B-14911]
 gi|89084460|gb|EAR63609.1| GTP-binding protein [Bacillus sp. NRRL B-14911]
          Length = 367

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 15/100 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+  N + K+     D+   +  PGTT D++ I L+    LV  
Sbjct: 158 REGKDVYVVGCTNVGKSTFINRILKEVTGEGDIITTSHFPGTTLDIIEIPLEDGKALV-- 215

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            DT GI     +         F++  +  +I+  KEI  K
Sbjct: 216 -DTPGIINHHQMAH-------FVDKRDFKVIMPKKEIKPK 247


>gi|121535867|ref|ZP_01667665.1| ferrous iron transport protein B [Thermosinus carboxydivorans Nor1]
 gi|121305532|gb|EAX46476.1| ferrous iron transport protein B [Thermosinus carboxydivorans Nor1]
          Length = 614

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           EI     KIV++G+ N GKS  FNAL    V  V++ PGTT D+
Sbjct: 11  EIPEGAKKIVLVGNPNVGKSVFFNALTGMYVD-VSNFPGTTVDI 53


>gi|86749731|ref|YP_486227.1| GTP-binding protein Era [Rhodopseudomonas palustris HaA2]
 gi|86572759|gb|ABD07316.1| GTP-binding protein [Rhodopseudomonas palustris HaA2]
          Length = 307

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 32/191 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +   G  + + DT G
Sbjct: 13  RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIESGSQIVLVDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISF--------PK-----N 319
           I      +++  ++  +    +AD + +L +    I+ + E  F        PK      
Sbjct: 72  IFAPKRRLDRAMVRTAWTGAHDADAVCVLLDARAGIDEQAETIFGNLENVGHPKVLVLNK 131

Query: 320 IDFIFIGTKSDLYSTYTE--EYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           ID +       L     E   +D   ++S+ +G+G+++L    +  L+ +    PF  P 
Sbjct: 132 IDLVPREKLLALTQAANERLRFDETFMVSALSGDGVDDL----RRGLAARVPVGPFHYPE 187

Query: 376 HK------RHL 380
            +      RHL
Sbjct: 188 DQMSDAPLRHL 198


>gi|331269648|ref|YP_004396140.1| HSR1-like GTP-binding protein [Clostridium botulinum BKT015925]
 gi|329126198|gb|AEB76143.1| GTP-binding protein, HSR1-related protein [Clostridium botulinum
           BKT015925]
          Length = 280

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 14/119 (11%)

Query: 160 QWIDKLTHIRSFIE-ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN 218
           +WI KL++   FI  A ++    + +   S K ++ND+L  K+D      + +   ++  
Sbjct: 70  EWIKKLSN--EFIRVASVNCVTGKGLN--SIKPMINDLLKQKHD------RLRAKGVVNI 119

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
             + +++G  N GKSS  N +AK + A V D PG T++   I   +    +++ DT G+
Sbjct: 120 TTRAMVVGIPNVGKSSFINKMAKNNTAKVGDKPGVTKNKQWIKTKMG---IELLDTPGV 175


>gi|149194865|ref|ZP_01871959.1| ferrous iron transport protein [Caminibacter mediatlanticus TB-2]
 gi|149135024|gb|EDM23506.1| ferrous iron transport protein [Caminibacter mediatlanticus TB-2]
          Length = 671

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS L N++A   +  V +  G T +   +    +GY +K+ D  G     
Sbjct: 6   IALVGQPNVGKSHLINSIANATLH-VGNFSGVTVEKKEVIFQRDGYRLKLIDLPGTYSLH 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
               +E + + FL  E  DL+L
Sbjct: 65  PYTPEERVTKEFLLNEKYDLVL 86


>gi|126728215|ref|ZP_01744031.1| GTP-binding protein [Sagittula stellata E-37]
 gi|126711180|gb|EBA10230.1| GTP-binding protein [Sagittula stellata E-37]
          Length = 216

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           ++   G SN GKSSL NAL  +K +A  ++ PG T+++    L  E YLV +
Sbjct: 46  EVCFAGRSNVGKSSLINALTGRKGLARASNTPGRTQEINYFTLGSERYLVDL 97


>gi|66043539|ref|YP_233380.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas syringae
           pv. syringae B728a]
 gi|63254246|gb|AAY35342.1| GTP-binding protein, HSR1-related [Pseudomonas syringae pv.
           syringae B728a]
          Length = 235

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ N IL L    +  +S  K+ +   + G+++   G SNAGKSS  N L    +A  + 
Sbjct: 26  QLKNPILGLCQQATFMLSAAKVDQCPDDEGFEVAFAGRSNAGKSSALNTLTHASLARTSK 85

Query: 250 IPGTTRDVLTIDLDLEGYLVKI 271
            PG T+ +    LD +  LV +
Sbjct: 86  TPGRTQLLNFFGLDEDRRLVDL 107


>gi|328765862|gb|EGF75964.1| hypothetical protein BATDEDRAFT_93174 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 301

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 76/176 (43%), Gaps = 40/176 (22%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI--SDTAGIRETD 281
           ++G  N GKSS  N L   +VA +   PG T     I +D   Y  KI   DT G+   D
Sbjct: 1   MIGDVNTGKSSTVNQLIGDEVAPIGARPGET-----IGIDRYVYRDKIIFVDTPGL---D 52

Query: 282 DIVEKEGIKRTFLEVENADLILLLK---------------EINSKKEISFPKNIDFIF-- 324
           DI  K   + T    E+AD+IL                  EI  KK     KNI F+   
Sbjct: 53  DINSKNS-EETLDFFEDADVILFFLNAAGTVFSDGERKSLEIIEKKN----KNILFVLNK 107

Query: 325 IGTKSDLYSTYTEEYDH--------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           I    D+ S      DH         ISS TGE +++L ++I  IL  K K++ F+
Sbjct: 108 IDAADDIPSLVKYVKDHSNNQYKVIPISSKTGENIDKLRSEILEILKKKHKEIQFA 163


>gi|319937329|ref|ZP_08011736.1| hypothetical protein HMPREF9488_02571 [Coprobacillus sp. 29_1]
 gi|319807695|gb|EFW04288.1| hypothetical protein HMPREF9488_02571 [Coprobacillus sp. 29_1]
          Length = 366

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 10/68 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-------AKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           R G  + ++G +N GKS+  N L        K+++  V++ PGTT +++ I LD    L 
Sbjct: 158 RKGRDVYVVGVTNVGKSTFINGLLKHYAEVEKQNLITVSEYPGTTLNLIEIPLDEHSVLY 217

Query: 270 KISDTAGI 277
              DT GI
Sbjct: 218 ---DTPGI 222


>gi|311087831|gb|ADP67910.1| ribosome biogenesis GTP-binding protein YsxC [Buchnera aphidicola
           str. JF98 (Acyrthosiphon pisum)]
          Length = 205

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 208 SQGKLGEI-IRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR 255
           S  K+ +I I+NG +I  +G+SN GKSS  NAL  +K +A  +  PG T+
Sbjct: 14  SYSKITDIDIQNGIEIAFIGYSNTGKSSAINALTNQKKLARFSKTPGRTQ 63


>gi|298712460|emb|CBJ33234.1| Nug1, nuclear ribosome-associated GTPase [Ectocarpus siliculosus]
          Length = 631

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++    + ++G+ N GKSSL N+L +     V+  PG T+ +  I LD     VK+ D  
Sbjct: 265 LKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLD---KTVKLLDCP 321

Query: 276 GI 277
           GI
Sbjct: 322 GI 323


>gi|289547854|ref|YP_003472842.1| GTP-binding proten HflX [Thermocrinis albus DSM 14484]
 gi|289181471|gb|ADC88715.1| GTP-binding proten HflX [Thermocrinis albus DSM 14484]
          Length = 368

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAG-IR 278
           ++ ++G++N GKSSL   L  +DV +  D+P  T D  T   L      +  +DT G IR
Sbjct: 197 RVALVGYTNVGKSSLMKVLTGRDV-LSADMPFATLDTTTSARLLFPDLKILFTDTVGFIR 255

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
           +   +++  E  K T  EV+ AD+IL + +I+    I   K +  +     +D
Sbjct: 256 KLPPELI--ESFKATLEEVQEADIILHVVDISDSSWIEKVKVVQQVLADLSAD 306


>gi|257483007|ref|ZP_05637048.1| hypothetical protein PsyrptA_07111 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331011755|gb|EGH91811.1| hypothetical protein PSYTB_19151 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 462

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  LV + DT G+
Sbjct: 11  KLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVDGQALVDLYDTPGL 69


>gi|256784332|ref|ZP_05522763.1| ribosome-associated GTPase [Streptomyces lividans TK24]
 gi|289768211|ref|ZP_06527589.1| ribosome-associated GTPase [Streptomyces lividans TK24]
 gi|289698410|gb|EFD65839.1| ribosome-associated GTPase [Streptomyces lividans TK24]
          Length = 366

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKK---DVAIVTDIPGTTRDVLTID--LDLEGYLVKIS 272
           +G   V+LG S AGKS+L NAL  +   DV  + D+ G  R   T    L L G  V I 
Sbjct: 200 SGGTAVLLGQSGAGKSTLANALLGEDAMDVQAIRDVDGKGRHTTTTRNLLALPGGGVLI- 258

Query: 273 DTAGIRETDDIVEKEGIKRTFLEV 296
           DT G+R         G+ + F E+
Sbjct: 259 DTPGLRGVGLFDAGNGVDQVFAEI 282


>gi|227501251|ref|ZP_03931300.1| FeoB family ferrous iron (Fe2+) uptake protein [Anaerococcus
           tetradius ATCC 35098]
 gi|227216652|gb|EEI82056.1| FeoB family ferrous iron (Fe2+) uptake protein [Anaerococcus
           tetradius ATCC 35098]
          Length = 716

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 12/89 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VKISDT 274
           YKI + G+ N+GK++LFN L   +   V + PG T D        +G L     + I D 
Sbjct: 3   YKIALAGNPNSGKTTLFNDLTGSNQR-VGNWPGVTVD------KKQGVLRGHKDIIIEDL 55

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303
            GI        +E + R +L  E  DLI+
Sbjct: 56  PGIYSLSPYTMEEVVSRQYLVGERPDLII 84


>gi|193216039|ref|YP_001997238.1| hypothetical protein Ctha_2341 [Chloroherpeton thalassium ATCC
           35110]
 gi|193089516|gb|ACF14791.1| hypothetical protein Ctha_2341 [Chloroherpeton thalassium ATCC
           35110]
          Length = 603

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA--IVTDIPGTTRDVL 258
           S + +  L E+++  + + ++G   +GKS+L NAL +KD+A   V +   TT   L
Sbjct: 34  SGVDRLNLAELVQKRFTVAVVGQMRSGKSTLINALVQKDIAPTAVNECTATTNHFL 89


>gi|157413842|ref|YP_001484708.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9215]
 gi|157388417|gb|ABV51122.1| GTP-binding protein ERA [Prochlorococcus marinus str. MIT 9215]
          Length = 303

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + +LG  N GKS+L N L  + + I + +  TTR+ L   L  E   +   DT G
Sbjct: 5   RSGF-VTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNKLKGILTTENGQIIFVDTPG 63

Query: 277 IRE 279
           + +
Sbjct: 64  VHK 66


>gi|156841869|ref|XP_001644305.1| hypothetical protein Kpol_1066p11 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114945|gb|EDO16447.1| hypothetical protein Kpol_1066p11 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 242

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 43/223 (19%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD----LEGYLVKISDTAG 276
           K+V+LG S+ GK+S+   L   +        G      TI++D    + G    +S    
Sbjct: 20  KLVLLGDSSVGKTSIVGRLTTGNFINSNATIGAAFVTTTIEVDDEEMINGGNNGMSSKRS 79

Query: 277 I--RETDDIVEKEGIKR----TFLEVENADLILL----------------LKEINSKKEI 314
           I  R   +I +  G +R      +   N D+ L+                ++E+NS  E 
Sbjct: 80  IKKRVNFEIWDTAGQERYRSLAPMYYRNTDVALIVFDLSRPQSFKGAQSWIEELNSYVEE 139

Query: 315 SFPKNIDFIFIGTKSDL------YSTYTEEYDHL--------ISSFTGEGLEELI-NKIK 359
           S    I  + +G+K D+       +   + +D L        +S+ TGEG++EL  N ++
Sbjct: 140 SSRGEIITVLVGSKKDIEIGQPSMAPIIDNFDKLKFTKNLQKVSAKTGEGIQELFENIVR 199

Query: 360 SILSNKFKKL--PFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
            + + KF+ L  P   P H +H+   S+T  +  +      +C
Sbjct: 200 ELPNEKFRPLGQPNGEPEHHKHIKLDSKTRSWTRITDRTACEC 242


>gi|28378240|ref|NP_785132.1| GTP-binding protein YqeH [Lactobacillus plantarum WCFS1]
 gi|28271075|emb|CAD63980.1| GTPase [Lactobacillus plantarum WCFS1]
          Length = 378

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 21/153 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N +       KD+   +  PGTT D + I LD +G++
Sbjct: 165 EKYRRGRDVYVVGVTNVGKSTLINRIIANNTGLKDLITTSRFPGTTLDKIEIPLD-DGHM 223

Query: 269 VKISDTAGIRETDDIVE------------KEGIKRTFLEVENADLILLLKEINSKKEISF 316
             + DT GI   + +              +  I+    ++ N    L L  +     +  
Sbjct: 224 --MVDTPGIIHPEQMAHVLSGDDLKLVSPQREIRPKGFQLGNGQ-TLFLGGVARLDIVDT 280

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
            K    +++     L+ T TE  D+  +   GE
Sbjct: 281 LKATGTVYVDNNLPLHRTRTENADNFYTKHVGE 313


>gi|88597072|ref|ZP_01100308.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190761|gb|EAQ94734.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 84-25]
          Length = 291

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           G+ E+   + +  ++     + + D+IL +  +
Sbjct: 60  GLHESGATLNQLLVQSAIKSMGDCDVILFVASV 92


>gi|330979995|gb|EGH78261.1| GTP-binding protein, HSR1-related protein [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 265

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGI 277
           ++ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  LV++ DT G+
Sbjct: 11  RLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVDGEALVELYDTPGL 69


>gi|254473629|ref|ZP_05087025.1| ferrous iron transport protein B [Pseudovibrio sp. JE062]
 gi|211957341|gb|EEA92545.1| ferrous iron transport protein B [Pseudovibrio sp. JE062]
          Length = 780

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 10/121 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           ++ +LG +N+GKSSLFN L  +   ++ + PG T D  T   + +   + + D  G+   
Sbjct: 16  QVHLLGTANSGKSSLFNKLTGRS-QVIGNWPGVTVDRKTGICETQTIELALLDLPGVATL 74

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI-----SFPKNIDFIFIGTKSDL 331
               DD +++   ++  L    A L ++L  I  ++ +     +   ++  + + TK+DL
Sbjct: 75  SSPEDDRIDERITRQALLSDRPAALAVVLDPIALERSLAILLQALAFDVPIVAVLTKADL 134

Query: 332 Y 332
           +
Sbjct: 135 W 135


>gi|206889897|ref|YP_002249106.1| GTP-binding protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741835|gb|ACI20892.1| GTP-binding protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 509

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 8/95 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAG-IR 278
           + I+G++NAGKS+L NAL K  V  V D    T D  +  L    E  L+ I+DT G IR
Sbjct: 340 VSIIGYTNAGKSTLLNALTKSSV-FVEDKMFATLDTSSRRLKFPEEKELI-ITDTVGFIR 397

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           +  DD+V     K T  E+++A L++ L +I++ +
Sbjct: 398 DLPDDLV--AAFKATLEELQDASLLIHLVDISNPQ 430


>gi|187935182|ref|YP_001887073.1| ribosome biogenesis GTP-binding protein YsxC [Clostridium botulinum
           B str. Eklund 17B]
 gi|238691648|sp|B2TPB6|ENGB_CLOBB RecName: Full=Probable GTP-binding protein EngB
 gi|187723335|gb|ACD24556.1| GTP-binding protein [Clostridium botulinum B str. Eklund 17B]
          Length = 198

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 43/172 (25%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR---------DVLTIDLDLEGYLVKI 271
           +  +G SN GKSSL N+L  +K +A V+  PG TR         D   +DL   GY  K+
Sbjct: 26  VAFVGRSNVGKSSLINSLTNRKKLAKVSGTPGKTRLINFFLINNDFYLVDLPGYGY-AKV 84

Query: 272 S----DTAGIRETDDIVEKEGIKRTFLEVEN-----ADLILLLKEINSKKEISFPKNIDF 322
           S    DT G      +  +E +KR    V++      D I++        E +     D 
Sbjct: 85  SKSEKDTWGKTIETYLSHREELKRIVCLVDSRHKPTGDDIMMY-------EWAKHFGYDV 137

Query: 323 IFIGTKSD-LYSTYTEEYDHLI---------------SSFTGEGLEELINKI 358
           + + TKSD L +   ++ + LI               SS   +G EELI+K+
Sbjct: 138 VVVATKSDKLKNAEFKKSEKLIRETLNLTKDDKLYFYSSLNKKGTEELIDKL 189


>gi|186703647|emb|CAQ43258.1| Nucleolar GTP-binding protein 2 [Zygosaccharomyces rouxii]
          Length = 503

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L  + +L+   D  G
Sbjct: 313 RKQISVGFIGYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLMKKIFLI---DCPG 369

Query: 277 I-RETDDIVEKEGIKRTFLEVEN 298
           I   +    E++ + R  + VEN
Sbjct: 370 IVPPSSKDTEQDVLLRGVVRVEN 392


>gi|229586341|ref|YP_002844842.1| ribosome biogenesis GTP-binding protein YsxC [Rickettsia africae
           ESF-5]
 gi|259645905|sp|C3PMD9|ENGB_RICAE RecName: Full=Probable GTP-binding protein EngB
 gi|228021391|gb|ACP53099.1| Hypothetical GTP-binding protein [Rickettsia africae ESF-5]
          Length = 212

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)

Query: 222 IVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDL-------DLEGY 267
           I  +G SN GKSSL N + + K++A V++ PG TR +   +L       DL GY
Sbjct: 42  IAFVGKSNVGKSSLINTICSNKNLAKVSNTPGRTRQINFFNLADKLIIVDLPGY 95


>gi|167395647|ref|XP_001741679.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165893744|gb|EDR21881.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 1181

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD-IPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           K+VI+G+S  GKSSL N + KK+  IV+D +    + V     DL+   V + DT G++E
Sbjct: 12  KLVIIGNSRDGKSSLGNFILKKNAFIVSDKVCPENKGVKGSYGDLDRNNVFVIDTPGVQE 71

Query: 280 TDDIVEK 286
           ++++ +K
Sbjct: 72  SEEMNKK 78


>gi|118594629|ref|ZP_01551976.1| GTP-binding protein [Methylophilales bacterium HTCC2181]
 gi|118440407|gb|EAV47034.1| GTP-binding protein [Methylophilales bacterium HTCC2181]
          Length = 297

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 34/145 (23%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----------VLT---------ID 261
           +++I+G  N GKS++ NAL  K +A V + P  T+           +LT         I 
Sbjct: 118 RMLIMGVPNVGKSTIINALHHKKIAKVGNEPAVTKQQQRIILNASMILTDTPGMMWPKIS 177

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID 321
            +++GY +  S T GI   D+I   E     F  +++    L+ K+   K E  FP++ +
Sbjct: 178 NEIDGYYLAASHTIGINAYDEI---ETAMFLFHTIKDNYAELISKKY--KIEPPFPEDEE 232

Query: 322 FIFI----------GTKSDLYSTYT 336
           F+ I          G   DLY + T
Sbjct: 233 FLKILAKKRGFIVKGGAEDLYKSAT 257


>gi|78213693|ref|YP_382472.1| small GTP-binding protein domain-containing protein [Synechococcus
           sp. CC9605]
 gi|78198152|gb|ABB35917.1| Small GTP-binding protein domain [Synechococcus sp. CC9605]
          Length = 431

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 8/88 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIP-GTTRDVLTIDLDLE--GYL-VKISDTAGI 277
           I + G    GKSSL NAL ++ + + TD+  G+TR    +D  +E  G   V++ DT GI
Sbjct: 57  IALFGRVGVGKSSLINALIRRPL-LATDVAHGSTRRQQAVDWPVEIAGLTRVELVDTPGI 115

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305
            E D         R  +    ADL+LL+
Sbjct: 116 DEIDAAGRARLASRVAM---GADLVLLV 140


>gi|258591281|emb|CBE67578.1| putative GTP-binding protein engB [NC10 bacterium 'Dutch sediment']
          Length = 230

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 11/64 (17%)

Query: 221 KIVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTT---------RDVLTIDLDLEGYLVK 270
           +I ++G SN GKSSL N  L ++ +A V+ +PG T         RD   +DL   GY  K
Sbjct: 34  EIAVVGRSNVGKSSLINCLLRRRGLARVSGVPGRTQLLNFFLINRDFYLVDLPGYGY-AK 92

Query: 271 ISDT 274
           + D+
Sbjct: 93  VPDS 96


>gi|213964461|ref|ZP_03392661.1| GTPase [Corynebacterium amycolatum SK46]
 gi|213952654|gb|EEB64036.1| GTPase [Corynebacterium amycolatum SK46]
          Length = 535

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           ++ I+G++NAGKSSL NAL    V +V D    T D  T    L +G  V ++DT G   
Sbjct: 294 RVAIVGYTNAGKSSLLNALTDAGV-LVEDALFATLDPTTRRTKLRDGRTVIMTDTVGFVR 352

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E  + T  EV  AD+I+
Sbjct: 353 HLPTQLIEAFRSTLEEVLEADVIM 376


>gi|15451214|gb|AAK96878.1| putative GTPase [Arabidopsis thaliana]
          Length = 497

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I  LKN   SH         ++    + I+G  N GKSSL N+L +  V  V   PG TR
Sbjct: 204 IKLLKNYSRSHE--------LKKSITVGIIGLPNVGKSSLINSLKRAHVVNVGATPGLTR 255

Query: 256 DVLTIDLDLEGYLVKISDTAGI 277
            +  + LD     VK+ D  G+
Sbjct: 256 SLQEVHLDKN---VKLLDCPGV 274


>gi|152976731|ref|YP_001376248.1| GTP-binding protein Era [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025483|gb|ABS23253.1| GTP-binding protein Era [Bacillus cytotoxicus NVH 391-98]
          Length = 301

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 68/176 (38%), Gaps = 24/176 (13%)

Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   DT 
Sbjct: 5   GYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKVQGVYTENDAQVIFIDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP-----K 318
           GI +    +    +K     ++  D++L +              I   KE   P      
Sbjct: 65  GIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAAEGFGRGEEYIIEKLKETRQPVFLVIN 124

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLP 370
            ID +      +L   Y   Y+      IS+  G  +E LI  IK  L    +  P
Sbjct: 125 KIDQVHPEKLLELIDQYRNLYEFAEIVPISALEGNNVEALIGAIKKYLPEGPQYYP 180


>gi|313886207|ref|ZP_07819937.1| GTP-binding protein HflX [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332299693|ref|YP_004441614.1| GTP-binding protein HflX [Porphyromonas asaccharolytica DSM 20707]
 gi|312924386|gb|EFR35165.1| GTP-binding protein HflX [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332176756|gb|AEE12446.1| GTP-binding protein HflX [Porphyromonas asaccharolytica DSM 20707]
          Length = 411

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 13/114 (11%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTR 255
           K D    + +   G+++R    + ++G++N GKS+L N LAK D+     +   +  T R
Sbjct: 187 KIDKQKSVQRQNRGKMVR----VALVGYTNVGKSTLMNVLAKSDIFAENKLFATLDTTVR 242

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
            V+  +L        ++DT G          E  K T  EV  +DLIL + +I+
Sbjct: 243 KVVLGNLPF-----LLADTVGFIRKLPTQLVESFKSTLDEVRESDLILHVVDIS 291


>gi|260438652|ref|ZP_05792468.1| ferrous iron transport protein B [Butyrivibrio crossotus DSM 2876]
 gi|292809246|gb|EFF68451.1| ferrous iron transport protein B [Butyrivibrio crossotus DSM 2876]
          Length = 798

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 12/88 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VKISDTA 275
           KI + G+ N GK++LFNAL   +   V + PG T +        EG L     V I D  
Sbjct: 4   KIALAGNPNCGKTTLFNALTGSN-QFVGNWPGVTVE------KKEGKLKFDKEVTIMDLP 56

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303
           GI        +E + RT+L  E  D IL
Sbjct: 57  GIYSLSPYTLEEVVARTYLINERPDAIL 84


>gi|253682642|ref|ZP_04863439.1| GTP-binding protein Era [Clostridium botulinum D str. 1873]
 gi|253562354|gb|EES91806.1| GTP-binding protein Era [Clostridium botulinum D str. 1873]
          Length = 294

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ I I+G  N GKS+L N +  + ++IV+  P TTR+ +   L  + Y +   DT
Sbjct: 1   MFKSGF-ISIIGRPNVGKSTLINEILGEKLSIVSCRPQTTRNNIRAILTKDDYQLVFLDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  +K      +  DLI+ +
Sbjct: 60  PGIHKPRHKLGEYMVKAAESSKDEVDLIVFI 90


>gi|238491374|ref|XP_002376924.1| nucleolar GTPase, putative [Aspergillus flavus NRRL3357]
 gi|220697337|gb|EED53678.1| nucleolar GTPase, putative [Aspergillus flavus NRRL3357]
          Length = 568

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 335 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLI---DCPG 391

Query: 277 I 277
           +
Sbjct: 392 V 392


>gi|189462241|ref|ZP_03011026.1| hypothetical protein BACCOP_02927 [Bacteroides coprocola DSM 17136]
 gi|189431043|gb|EDV00028.1| hypothetical protein BACCOP_02927 [Bacteroides coprocola DSM 17136]
          Length = 837

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 4/100 (4%)

Query: 207 ISQGKLGEII---RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           +S+ KL EI    R    + ++G+ N GK+SLFN +A      V +  G T D      D
Sbjct: 107 VSEAKLKEIASGKRRTINVALVGNPNCGKTSLFN-VASGSHEHVGNYSGVTVDAKEGHFD 165

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +GY  ++ D  G         +E   R  +  E  D+I+
Sbjct: 166 FQGYHFRLVDLPGTYSLSAYSPEELYVRKHIIDETPDVII 205


>gi|167035934|ref|YP_001671165.1| GTP-binding proten HflX [Pseudomonas putida GB-1]
 gi|166862422|gb|ABZ00830.1| GTP-binding proten HflX [Pseudomonas putida GB-1]
 gi|313500872|gb|ADR62238.1| HflX [Pseudomonas putida BIRD-1]
          Length = 433

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFNAL + +V     +  T    L  ++
Sbjct: 182 VRSQREQARRGRKRADIPSVSLVGYTNAGKSTLFNALTESEVYAADQLFATLDPTLRRLE 241

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           L+  G +V ++DT G IR     +  E  + T  E  N+DL+L
Sbjct: 242 LNDLGPIV-LADTVGFIRHLPHKL-VEAFRATLEESSNSDLLL 282


>gi|77456283|ref|YP_345788.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas
           fluorescens Pf0-1]
 gi|119369235|sp|Q3KKA7|ENGB_PSEPF RecName: Full=Probable GTP-binding protein EngB
 gi|77380286|gb|ABA71799.1| putative GTP-binding protein [Pseudomonas fluorescens Pf0-1]
          Length = 214

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ N IL L    +  +S  K+ +   + G+++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QLKNPILGLCQQSTFMLSAAKVDQCPDDEGFEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTRDVLTIDLDLEGYLVKI 271
            PG T+ +    LD E  LV +
Sbjct: 62  TPGRTQLLNFFKLDDERRLVDL 83


>gi|281211856|gb|EFA86018.1| guanine nucleotide binding protein 1 [Polysphondylium pallidum
           PN500]
          Length = 788

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + ++GH N GKSSL N L  + V   +  PG T+   TI L  E   +++ D  G+
Sbjct: 450 VGMVGHPNVGKSSLINGLMGRKVVSTSRTPGHTKHFQTIFLTSE---IRLCDCPGL 502


>gi|194017708|ref|ZP_03056318.1| GTP-binding protein Era [Bacillus pumilus ATCC 7061]
 gi|194010608|gb|EDW20180.1| GTP-binding protein Era [Bacillus pumilus ATCC 7061]
          Length = 301

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +   L          D
Sbjct: 4   ESFKSGF-VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNTSQTIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T GI +    +    +K     ++  DLIL +  IN+K+
Sbjct: 63  TPGIHKPKHKLGDFMMKVATNTLKEVDLILFM--INAKE 99


>gi|229543819|ref|ZP_04432878.1| GTP-binding protein Era [Bacillus coagulans 36D1]
 gi|229324958|gb|EEN90634.1| GTP-binding protein Era [Bacillus coagulans 36D1]
          Length = 302

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 43/91 (47%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+  N +  + +AI++D P TTR+ +      +   +   DT GI +  
Sbjct: 11  ISIIGRPNVGKSTFINQVVGQKIAIMSDKPQTTRNKIQGVYTADDAQMIFIDTPGIHKPK 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK 312
             +    +K     ++  DLIL +     K+
Sbjct: 71  HKLGDFMVKSATDTLKEVDLILFMVNAEEKR 101


>gi|20092288|ref|NP_618363.1| ferrous iron transport protein B [Methanosarcina acetivorans C2A]
 gi|19917529|gb|AAM06843.1| ferrous iron transport protein B [Methanosarcina acetivorans C2A]
          Length = 670

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           K+  ++ N  ++ + G+ N GK+++FNA+  A++ V    + PG T +      +  G++
Sbjct: 2   KVWNLVENKIRVALAGNPNVGKTTVFNAITGARQKVG---NWPGVTVEKKVGTKEYAGHV 58

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPKNI-----DF 322
           ++I D  G          E + R ++  E  D+++ +L   N ++ +     +     + 
Sbjct: 59  LEIVDLPGTYSLTAYSADEVVARDYILEEKPDVVVQILDSTNLERNLYLSTQLLEMGTNL 118

Query: 323 IFIGTKSDLYSTYTEEYDHL 342
           +F    SDL     +E D L
Sbjct: 119 VFALNMSDLSERRGDEVDIL 138


>gi|300120398|emb|CBK19952.2| unnamed protein product [Blastocystis hominis]
          Length = 548

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  GI
Sbjct: 311 IGYPNVGKSSIINTLKKKQVCKVAPIPGETKVWQYITLLRNIYLI---DCPGI 360


>gi|302528834|ref|ZP_07281176.1| GTP-binding protein Era [Streptomyces sp. AA4]
 gi|302437729|gb|EFL09545.1| GTP-binding protein Era [Streptomyces sp. AA4]
          Length = 299

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   + G  NAGKS+L NAL    VAI +  P TTR  +   +  +   + I DT G
Sbjct: 6   RSGFACFV-GRPNAGKSTLTNALVGTKVAITSSKPQTTRHAIRGIVHRDDAQLVIIDTPG 64

Query: 277 I 277
           +
Sbjct: 65  L 65


>gi|227206218|dbj|BAH57164.1| AT1G52980 [Arabidopsis thaliana]
          Length = 419

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 28/173 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +    +  +G+ N GKSS+ N L  K+V  V  IPG T+    I L    +L+   D  G
Sbjct: 150 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLI---DCPG 206

Query: 277 I----RETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
           +    R+T+ DIV K  ++ T LE  +  +  +L+ +  +      KN D          
Sbjct: 207 VVYQSRDTETDIVLKGVVRVTNLEDASEHIGEVLRRVKKEHLQRAYKNKD---------- 256

Query: 332 YSTYTEEYDHLIS--SFTGE----GLEELINKIKSILSNKFK-KLPFSIPSHK 377
              + +++D L+     +G+    G  +L+   K IL +  + ++PF +P  K
Sbjct: 257 ---WEDDHDFLLQLCKSSGKLLKGGEPDLMTGAKMILHDWQRGRIPFFVPPPK 306


>gi|134103475|ref|YP_001109136.1| ribosome-associated GTPase [Saccharopolyspora erythraea NRRL 2338]
 gi|291005983|ref|ZP_06563956.1| ribosome-associated GTPase [Saccharopolyspora erythraea NRRL 2338]
 gi|133916098|emb|CAM06211.1| putative ATP/GTP-binding protein [Saccharopolyspora erythraea NRRL
           2338]
          Length = 361

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 10/83 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKD---VAIVTDIPGTTRDVLT----IDLDLEGYLVKISDT 274
           +V+LG S AGKS+L NAL   D      V    G  R        + L   G L+   DT
Sbjct: 201 VVLLGASGAGKSTLANALLGADELATGAVRAQDGKGRHTTVRREMVPLPEGGVLI---DT 257

Query: 275 AGIRETDDIVEKEGIKRTFLEVE 297
            G+R       +EG++RTF E+E
Sbjct: 258 PGLRGVGLFGAEEGLERTFAEIE 280


>gi|49186555|ref|YP_029807.1| GTP-binding protein [Bacillus anthracis str. Sterne]
 gi|227813393|ref|YP_002813402.1| GTP-binding protein HflX [Bacillus anthracis str. CDC 684]
 gi|49180482|gb|AAT55858.1| GTP-binding protein [Bacillus anthracis str. Sterne]
 gi|227007179|gb|ACP16922.1| GTP-binding protein HflX [Bacillus anthracis str. CDC 684]
          Length = 354

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 198 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 256

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 257 QDLPTSLIAAFRSTLEEAGEADVIL 281


>gi|325181954|emb|CCA16408.1| nucleolar GTPbinding protein 2 putative [Albugo laibachii Nc14]
          Length = 494

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK----ISDTAGIRE 279
           ++G  N GKSS+ NAL KK V  V  IPG T+    I L    +L+     + D+  + E
Sbjct: 316 VIGFPNVGKSSVINALRKKKVCNVAPIPGETKVWQYITLMRRIFLIDCPGVVYDSGAVDE 375

Query: 280 TDDIVEKEGIKRTFLEVENADLI 302
            + ++  +GI R     +  D I
Sbjct: 376 VETVL--KGIVRAERLPQPTDFI 396


>gi|330822063|ref|XP_003291620.1| hypothetical protein DICPUDRAFT_39284 [Dictyostelium purpureum]
 gi|325078185|gb|EGC31850.1| hypothetical protein DICPUDRAFT_39284 [Dictyostelium purpureum]
          Length = 398

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRE- 279
           I ++G  NAGKS+L NA+  + V  V+ I  TTRD +L +  + +  L+  +DT G+ + 
Sbjct: 95  IAVIGAPNAGKSTLVNAIVGEKVCAVSHIEHTTRDAILGVYTEGDTQLL-FNDTPGMIKN 153

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305
              +   +E +   +  V+ +DL+L++
Sbjct: 154 FNKNTNVREFVNLAWTTVKESDLVLMV 180


>gi|325271234|ref|ZP_08137779.1| GTP-binding protein HflX [Pseudomonas sp. TJI-51]
 gi|324103637|gb|EGC00939.1| GTP-binding protein HflX [Pseudomonas sp. TJI-51]
          Length = 433

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFNAL + +V     +  T    L  ++
Sbjct: 182 VRSQREQARRGRKRADIPSVSLVGYTNAGKSTLFNALTESEVYAADQLFATLDPTLRRLE 241

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           L+  G +V ++DT G IR     +  E  + T  E  N+DL+L
Sbjct: 242 LNDLGPIV-LADTVGFIRHLPHKL-VEAFRATLEESSNSDLLL 282


>gi|307154522|ref|YP_003889906.1| GTP-binding proten HflX [Cyanothece sp. PCC 7822]
 gi|306984750|gb|ADN16631.1| GTP-binding proten HflX [Cyanothece sp. PCC 7822]
          Length = 565

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRD 256
           N++ +H S+ +     ++   + I+G++NAGKS+L NAL   +V     +   +  TTR 
Sbjct: 376 NELQAHRSRLRKQRQKQDVPSVAIVGYTNAGKSTLLNALTSAEVYTADQLFATLDPTTRR 435

Query: 257 VLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  +D D      + ++DT G          +  + T  EV  AD +L + +I+
Sbjct: 436 LAILDPDTGTTETILLTDTVGFIHELPPSLVDAFRATLEEVTEADALLHMVDIS 489


>gi|304391556|ref|ZP_07373498.1| GTP-binding protein HflX [Ahrensia sp. R2A130]
 gi|303295785|gb|EFL90143.1| GTP-binding protein HflX [Ahrensia sp. R2A130]
          Length = 455

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN+L   +V +  D+   T D     L L +G    +SDT G    
Sbjct: 235 VALVGYTNAGKSTLFNSLTGAEV-MAKDMLFATLDPTLRQLHLPQGTQAILSDTVGFVSD 293

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  A+LIL +++I+     +  +++  I   +G   D +S   E 
Sbjct: 294 LPTHLVAAFRATLEEVIEAELILHVRDISDSDTKAQAEDVYTILSQLGVGEDGHSRVVEV 353

Query: 339 YDHLISSFTGEGLEEL 354
           ++  I     E LE +
Sbjct: 354 WNK-IDLLDAEALEAI 368


>gi|288553082|ref|YP_003425017.1| hypothetical protein BpOF4_00280 [Bacillus pseudofirmus OF4]
 gi|288544242|gb|ADC48125.1| hypothetical protein BpOF4_00280 [Bacillus pseudofirmus OF4]
          Length = 285

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +ILG  N GKS+L N LA K +A V D PG T+
Sbjct: 124 MILGIPNVGKSTLINRLASKKIAKVGDRPGVTK 156


>gi|254735742|ref|ZP_05193448.1| GTP-binding protein HflX [Bacillus anthracis str. Western North
           America USA6153]
 gi|254751128|ref|ZP_05203167.1| GTP-binding protein HflX [Bacillus anthracis str. Vollum]
 gi|254759445|ref|ZP_05211470.1| GTP-binding protein HflX [Bacillus anthracis str. Australia 94]
 gi|270000540|ref|NP_846088.2| GTP-binding protein [Bacillus anthracis str. Ames]
 gi|269850252|gb|AAP27574.2| GTP-binding protein [Bacillus anthracis str. Ames]
          Length = 353

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|220929416|ref|YP_002506325.1| small GTP-binding protein [Clostridium cellulolyticum H10]
 gi|219999744|gb|ACL76345.1| small GTP-binding protein [Clostridium cellulolyticum H10]
          Length = 607

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +N   +V++G+ N GKS  FNAL    V  V++ PGTT D+ T       Y+V+  DT G
Sbjct: 8   KNLKHLVLVGNPNVGKSLFFNALTGMYVD-VSNFPGTTVDISTGRYG--DYVVE--DTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
           I       ++E + R    + N DL+L
Sbjct: 63  IYGVSSFNDEERVARDV--IINGDLVL 87


>gi|54310186|ref|YP_131206.1| GTP-binding protein Era [Photobacterium profundum SS9]
 gi|46914627|emb|CAG21404.1| putative GTP-binding protein Era [Photobacterium profundum SS9]
          Length = 301

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  ++ +D   +GY     DT G+   
Sbjct: 10  IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDT-RDGYQAVFIDTPGLH-- 66

Query: 281 DDIVEKEGIKR 291
             I EK  I R
Sbjct: 67  --IEEKRTINR 75


>gi|26991571|ref|NP_746996.1| GTP-binding protein HflX [Pseudomonas putida KT2440]
 gi|148549971|ref|YP_001270073.1| HSR1-related GTP-binding protein [Pseudomonas putida F1]
 gi|24986658|gb|AAN70460.1|AE016687_7 GTP-binding protein HflX [Pseudomonas putida KT2440]
 gi|148514029|gb|ABQ80889.1| GTP-binding protein, HSR1-related [Pseudomonas putida F1]
          Length = 433

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFNAL + +V     +  T    L  ++
Sbjct: 182 VRSQREQARRGRKRADIPSVSLVGYTNAGKSTLFNALTESEVYAADQLFATLDPTLRRLE 241

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           L+  G +V ++DT G IR     +  E  + T  E  N+DL+L
Sbjct: 242 LNDLGPIV-LADTVGFIRHLPHKL-VEAFRATLEESSNSDLLL 282


>gi|324998271|ref|ZP_08119383.1| GTPase Era [Pseudonocardia sp. P1]
          Length = 301

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   + G  NAGKS+L NAL  + VAI +  P TTR  +   +      + + DT G
Sbjct: 11  RSGFACFV-GRPNAGKSTLTNALVGQKVAITSSRPQTTRHTIRGIVHRPDAQIVLVDTPG 69

Query: 277 I 277
           +
Sbjct: 70  L 70


>gi|322496439|emb|CBZ31509.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 627

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 8/96 (8%)

Query: 198 FLKNDISSHISQ-GKLGEIIRNGYK-------IVILGHSNAGKSSLFNALAKKDVAIVTD 249
           F K ++ S + Q  +L  +   G K       + ++G+ N GKSSL N L +K V  V  
Sbjct: 289 FGKGNVISLLRQFARLHNVTHRGSKRTKTPISVGVIGYPNVGKSSLINTLRRKSVCKVAP 348

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           IPG T+    + L    +L+        RE+++ ++
Sbjct: 349 IPGETKVWQYVALTRSIFLIDCPGVVYDRESNNDIQ 384


>gi|315053937|ref|XP_003176343.1| GTP-binding protein engB [Arthroderma gypseum CBS 118893]
 gi|311338189|gb|EFQ97391.1| GTP-binding protein engB [Arthroderma gypseum CBS 118893]
          Length = 314

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 37/228 (16%)

Query: 170 SFIEADLDFSEE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           S+ +  +  SE+ E  + F +K   + I     ++   I +    E+       V +G S
Sbjct: 64  SYRDPTIPVSEQLEYARRFFAKSKHSPIHLWTTNLFRKIPESDTPEV-------VFMGRS 116

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKIS--DTAGIRETDD--- 282
           N GKSS+ N L  +D+   +  PG T+ +    +  L+G   KI+  D+ G  +      
Sbjct: 117 NVGKSSVINMLVGEDICYTSATPGRTQTMNAFGVGGLKGGETKINIIDSPGYGKASRPEW 176

Query: 283 -------IVEKEGIKRTFLEVE--------NADLILLLKEINSKKEISFPKNIDFIFIGT 327
                  + +++ ++R FL +E        + +++ +L+E     +I   K   FI  G 
Sbjct: 177 GHELMKYLSKRKQLRRVFLIIECKAGVKHSDKEVLSILREFTIPHQIIVSKADHFITEGR 236

Query: 328 KSDLYSTYT---EEYDHLISSFTGE---GLEELINKIKSIL--SNKFK 367
             D  +  T   +++ ++I+    E     EE I  +  IL  SNK +
Sbjct: 237 AGDHKAHRTASLKQFRNIIARIRKEVTPTREEGIPPLGDILACSNKIR 284


>gi|297833482|ref|XP_002884623.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330463|gb|EFH60882.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 582

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I  LKN   SH         ++    + I+G  N GKSSL N+L +  V  V   PG TR
Sbjct: 238 IKLLKNYSRSHE--------LKKSITVGIIGLPNVGKSSLINSLKRAHVVNVGATPGLTR 289

Query: 256 DVLTIDLDLEGYLVKISDTAGI 277
            +  + LD     VK+ D  G+
Sbjct: 290 SLQEVHLDKN---VKLLDCPGV 308


>gi|256850837|ref|ZP_05556226.1| ribosome biogenesis GTPase YqeH [Lactobacillus jensenii 27-2-CHN]
 gi|260661048|ref|ZP_05861962.1| ribosome biogenesis GTPase YqeH [Lactobacillus jensenii 115-3-CHN]
 gi|282934492|ref|ZP_06339747.1| ribosome biogenesis GTPase YqeH [Lactobacillus jensenii 208-1]
 gi|297205711|ref|ZP_06923106.1| ribosome biogenesis GTPase YqeH [Lactobacillus jensenii JV-V16]
 gi|256615899|gb|EEU21087.1| ribosome biogenesis GTPase YqeH [Lactobacillus jensenii 27-2-CHN]
 gi|260547985|gb|EEX23961.1| ribosome biogenesis GTPase YqeH [Lactobacillus jensenii 115-3-CHN]
 gi|281301439|gb|EFA93728.1| ribosome biogenesis GTPase YqeH [Lactobacillus jensenii 208-1]
 gi|297148837|gb|EFH29135.1| ribosome biogenesis GTPase YqeH [Lactobacillus jensenii JV-V16]
          Length = 369

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 8/61 (13%)

Query: 222 IVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +  +G +N GKS+L N++       KD+   +  PGTT D + I LD   YLV   DT G
Sbjct: 169 VYFVGTTNVGKSTLINSIIDLMGDVKDLITTSRFPGTTLDQIKIPLDSGHYLV---DTPG 225

Query: 277 I 277
           I
Sbjct: 226 I 226


>gi|170106177|ref|XP_001884300.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164640646|gb|EDR04910.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 715

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 210 GKLGEIIRN--GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-- 265
           G+  +  RN     + ++G +N GKSS  N+L +K    V  +  ++R   T +L  E  
Sbjct: 288 GQWAQEKRNEVPLTVAVVGITNVGKSSFVNSLLRKRALPVYSLSSSSRGPTTTELPQETT 347

Query: 266 ----GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK-EINSKKEISFPKNI 320
               G  ++  DT G+       E+EG  +   E+   D++L  K  I+  K+ SFP   
Sbjct: 348 LEVAGKQIRFIDTPGLSFAAHDDEEEGHAQDQNEIRGRDILLRNKGRIDRLKDPSFP-VA 406

Query: 321 DFIFIGTKSDLYSTYT 336
             +  G   DL   Y+
Sbjct: 407 HIVARGNAEDLMLLYS 422


>gi|111115493|ref|YP_710111.1| GTP-binding protein Era [Borrelia afzelii PKo]
 gi|216263477|ref|ZP_03435472.1| GTP-binding protein Era [Borrelia afzelii ACA-1]
 gi|122956333|sp|Q0SMJ3|ERA_BORAP RecName: Full=GTPase Era
 gi|110890767|gb|ABH01935.1| GTP-binding protein [Borrelia afzelii PKo]
 gi|215980321|gb|EEC21142.1| GTP-binding protein Era [Borrelia afzelii ACA-1]
          Length = 290

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 29/200 (14%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGI---R 278
            ILG  + GKS+L N++    ++I++ IP TTR+ +  I  D  G ++ I DT G    +
Sbjct: 7   AILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFI-DTPGFHLSK 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
           +  +I     I  +  EVE   LIL + +I        N   EI     I F+ +  K D
Sbjct: 66  KKFNIAMMNNIHSSIGEVE---LILYIIDIQDTPGEEENKMLEIIKNSKIKFLVLLNKVD 122

Query: 331 LYSTYTEEYDHL-------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           L +T  +E                 IS+      EEL NKI    S      P    + +
Sbjct: 123 LKNTKIKEITQFLKEKGIEDSNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYYTDQ 182

Query: 378 RHLYHLSQTVRYLEMASLNE 397
           +  + +S+ +R   + +L E
Sbjct: 183 KINFRISEIIREKAIENLKE 202


>gi|55379046|ref|YP_136896.1| GTP-binding protein [Haloarcula marismortui ATCC 43049]
 gi|55231771|gb|AAV47190.1| GTP-binding protein [Haloarcula marismortui ATCC 43049]
          Length = 331

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 37/238 (15%)

Query: 161 WI-DKLTHIRSFIEA-----DLDFSEEEDVQNFSS-----KEVLNDILFLKNDISSHISQ 209
           W  DK+  IR   E+     D+D + +   Q F+      +EV +D+  +    ++H + 
Sbjct: 102 WAADKVVEIRQEYESRVARGDIDTARKLRKQAFARIADVVEEVEDDLAAIS---TAHNAL 158

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
             + +I  N   IV+ G+ N GKSS  N + + D  I +  P TT  +     + +    
Sbjct: 159 KDIPDIRPNEPAIVVAGYPNVGKSSFVNRVTRADNEIAS-YPFTTTQIRVGHFEDQRIRY 217

Query: 270 KISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------- 318
           ++ DT G+  R  +D  E E    + LE   AD +L+   I+   E  +P          
Sbjct: 218 QLVDTPGLLDRPPEDRNEIESQAVSALE-HLADAVLVF--IDPSGECGYPLADQLELRNA 274

Query: 319 -----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                ++  + I  KSDL +    E DH +S    + ++ ++      +  +  +LPF
Sbjct: 275 IEARFDVPVLTIANKSDLSTDV--EADHYMSVTEDDNVDGVLQAAIDAVDYEL-ELPF 329


>gi|15900573|ref|NP_345177.1| GTP-binding protein HflX [Streptococcus pneumoniae TIGR4]
 gi|15902633|ref|NP_358183.1| GTP-binding protein HflX [Streptococcus pneumoniae R6]
 gi|111658673|ref|ZP_01409316.1| hypothetical protein SpneT_02000179 [Streptococcus pneumoniae
           TIGR4]
 gi|116517076|ref|YP_816083.1| GTP-binding protein HflX [Streptococcus pneumoniae D39]
 gi|148985255|ref|ZP_01818478.1| GTP-binding protein HflX [Streptococcus pneumoniae SP3-BS71]
 gi|148997246|ref|ZP_01824900.1| ribonuclease Z [Streptococcus pneumoniae SP11-BS70]
 gi|149010705|ref|ZP_01832076.1| ribonuclease Z [Streptococcus pneumoniae SP19-BS75]
 gi|168482900|ref|ZP_02707852.1| GTP-binding proten HflX [Streptococcus pneumoniae CDC1873-00]
 gi|168487236|ref|ZP_02711744.1| GTP-binding proten HflX [Streptococcus pneumoniae CDC1087-00]
 gi|168492253|ref|ZP_02716396.1| GTP-binding proten HflX [Streptococcus pneumoniae CDC0288-04]
 gi|168492830|ref|ZP_02716973.1| GTP-binding proten HflX [Streptococcus pneumoniae CDC3059-06]
 gi|168575342|ref|ZP_02721278.1| GTP-binding proten HflX [Streptococcus pneumoniae MLV-016]
 gi|169833818|ref|YP_001694145.1| GTP-binding proten HflX [Streptococcus pneumoniae Hungary19A-6]
 gi|182683599|ref|YP_001835346.1| GTP-binding protein HflX [Streptococcus pneumoniae CGSP14]
 gi|221231488|ref|YP_002510640.1| GTPase [Streptococcus pneumoniae ATCC 700669]
 gi|225854198|ref|YP_002735710.1| GTP-binding proten HflX [Streptococcus pneumoniae JJA]
 gi|225856365|ref|YP_002737876.1| GTP-binding proten HflX [Streptococcus pneumoniae P1031]
 gi|225860663|ref|YP_002742172.1| GTP-binding proten HflX [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229816|ref|ZP_06963497.1| GTP-binding proten HflX [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254804|ref|ZP_06978390.1| GTP-binding proten HflX [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502466|ref|YP_003724406.1| HflX subfamily GTP-binding protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303254746|ref|ZP_07340847.1| putative GTPase [Streptococcus pneumoniae BS455]
 gi|303259943|ref|ZP_07345917.1| GTP-binding protein HflX [Streptococcus pneumoniae SP-BS293]
 gi|303261349|ref|ZP_07347297.1| GTP-binding protein HflX [Streptococcus pneumoniae SP14-BS292]
 gi|303264015|ref|ZP_07349936.1| GTP-binding protein HflX [Streptococcus pneumoniae BS397]
 gi|303266329|ref|ZP_07352219.1| GTP-binding protein HflX [Streptococcus pneumoniae BS457]
 gi|303268796|ref|ZP_07354584.1| GTP-binding protein HflX [Streptococcus pneumoniae BS458]
 gi|307067290|ref|YP_003876256.1| GTPase [Streptococcus pneumoniae AP200]
 gi|14972147|gb|AAK74817.1| GTP-binding protein HflX [Streptococcus pneumoniae TIGR4]
 gi|15458170|gb|AAK99393.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116077652|gb|ABJ55372.1| GTP-binding protein HflX [Streptococcus pneumoniae D39]
 gi|147756946|gb|EDK63986.1| ribonuclease Z [Streptococcus pneumoniae SP11-BS70]
 gi|147765186|gb|EDK72115.1| ribonuclease Z [Streptococcus pneumoniae SP19-BS75]
 gi|147922453|gb|EDK73572.1| GTP-binding protein HflX [Streptococcus pneumoniae SP3-BS71]
 gi|168996320|gb|ACA36932.1| GTP-binding proten HflX [Streptococcus pneumoniae Hungary19A-6]
 gi|172043841|gb|EDT51887.1| GTP-binding proten HflX [Streptococcus pneumoniae CDC1873-00]
 gi|182628933|gb|ACB89881.1| GTP-binding protein HflX [Streptococcus pneumoniae CGSP14]
 gi|183569866|gb|EDT90394.1| GTP-binding proten HflX [Streptococcus pneumoniae CDC1087-00]
 gi|183573525|gb|EDT94053.1| GTP-binding proten HflX [Streptococcus pneumoniae CDC0288-04]
 gi|183576889|gb|EDT97417.1| GTP-binding proten HflX [Streptococcus pneumoniae CDC3059-06]
 gi|183578622|gb|EDT99150.1| GTP-binding proten HflX [Streptococcus pneumoniae MLV-016]
 gi|220673948|emb|CAR68457.1| putative GTPase [Streptococcus pneumoniae ATCC 700669]
 gi|225723310|gb|ACO19163.1| GTP-binding proten HflX [Streptococcus pneumoniae JJA]
 gi|225724309|gb|ACO20161.1| GTP-binding proten HflX [Streptococcus pneumoniae P1031]
 gi|225727118|gb|ACO22969.1| GTP-binding proten HflX [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238061|gb|ADI69192.1| HflX subfamily GTP-binding protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301793853|emb|CBW36246.1| putative GTPase [Streptococcus pneumoniae INV104]
 gi|301799710|emb|CBW32275.1| putative GTPase [Streptococcus pneumoniae OXC141]
 gi|301801535|emb|CBW34227.1| putative GTPase [Streptococcus pneumoniae INV200]
 gi|302598286|gb|EFL65331.1| putative GTPase [Streptococcus pneumoniae BS455]
 gi|302637483|gb|EFL67970.1| GTP-binding protein HflX [Streptococcus pneumoniae SP14-BS292]
 gi|302638862|gb|EFL69323.1| GTP-binding protein HflX [Streptococcus pneumoniae SP-BS293]
 gi|302641661|gb|EFL72020.1| GTP-binding protein HflX [Streptococcus pneumoniae BS458]
 gi|302644140|gb|EFL74397.1| GTP-binding protein HflX [Streptococcus pneumoniae BS457]
 gi|302646420|gb|EFL76646.1| GTP-binding protein HflX [Streptococcus pneumoniae BS397]
 gi|306408827|gb|ADM84254.1| GTPase [Streptococcus pneumoniae AP200]
 gi|327390402|gb|EGE88743.1| GTP-binding proten HflX [Streptococcus pneumoniae GA04375]
 gi|332204689|gb|EGJ18754.1| GTP-binding proten HflX [Streptococcus pneumoniae GA47901]
          Length = 412

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNILTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPHLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEE----LINKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E     L++KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVEDFTPTQTPYTLISAKSEDSRENLQALLLDKIKEIFEAFTLRVPFS-KSYKIH 375


>gi|328865732|gb|EGG14118.1| hypothetical protein DFA_11882 [Dictyostelium fasciculatum]
          Length = 215

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 15/164 (9%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           ND    +ND+  H  +GK    I+  YK++++G  N GKS++ + L  K +      P  
Sbjct: 7   NDYQQRQNDLLVHPYKGK----IQTSYKVILVGSPNVGKSTIVDRLIGKPINAPYTTPTI 62

Query: 254 TRDVLTIDLDLEGYLVKI------SDTAGIRETDDIVEKEGIKRTFLEVE-----NADLI 302
             D   I + ++   V I      S  A  + T   +   G    FL  +      + L 
Sbjct: 63  GIDFSKITIHIDQLPVNILIWNGDSGQARFKSTHPPLFYRGADFVFLVYDLNGSNQSYLY 122

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
              KE   +  +  PK    + IG K DL   ++   D  I+SF
Sbjct: 123 DSYKEHIEQNPLLDPKTSSVVIIGNKLDLVQRFSFFKDGSITSF 166


>gi|323142828|ref|ZP_08077540.1| ferrous iron transport protein B [Succinatimonas hippei YIT 12066]
 gi|322417370|gb|EFY07992.1| ferrous iron transport protein B [Succinatimonas hippei YIT 12066]
          Length = 713

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 11/108 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G+ N+GK++LFNAL   +   V + PG T D   +   L+    K+ D  G+   
Sbjct: 5   KIALIGNQNSGKTTLFNALTGAN-QYVGNWPGVTVD--KVVGTLKSTDTKVVDLPGLYSL 61

Query: 281 DDIVEKEGIKRTFLEVENADLIL-------LLKEINSKKE-ISFPKNI 320
                +E + R +L   + DLI+       L + ++   E +SF KNI
Sbjct: 62  SPYSPEEIVSREYLLSGDYDLIVNVVDAAHLERSLSLTAELLSFNKNI 109


>gi|320537107|ref|ZP_08037081.1| putative ferrous iron transport protein B [Treponema phagedenis
           F0421]
 gi|320146052|gb|EFW37694.1| putative ferrous iron transport protein B [Treponema phagedenis
           F0421]
          Length = 941

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 222 IVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           I   G  N+GKS+LFN +  A++ VA   + PG T +  T +    G  V I+D  G   
Sbjct: 8   IAFAGQPNSGKSTLFNMMTGARQHVA---NYPGITVEKKTGNYQAFGQSVLITDLPGTYS 64

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                 +E + R F+  E  +L++
Sbjct: 65  LTSYSPEERVSRNFILFEKPNLLV 88


>gi|307175255|gb|EFN65301.1| Guanine nucleotide-binding protein-like 3-like protein [Camponotus
           floridanus]
          Length = 546

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 212 LGEIIRNGYKIV------ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           LG   RN   +       ++G  N GKSS+ N+L +     V ++PG T+ +  + LD +
Sbjct: 214 LGNYCRNNSNVKTSITVGVVGLPNVGKSSVINSLKRSKACNVGNVPGITKTMQIVQLDSK 273

Query: 266 GYLVKISDTAGI 277
              +K+ D+ GI
Sbjct: 274 ---IKLLDSPGI 282


>gi|255524251|ref|ZP_05391210.1| GTP1/OBG protein [Clostridium carboxidivorans P7]
 gi|296185373|ref|ZP_06853783.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
           carboxidivorans P7]
 gi|255512076|gb|EET88357.1| GTP1/OBG protein [Clostridium carboxidivorans P7]
 gi|296050207|gb|EFG89631.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
           carboxidivorans P7]
          Length = 280

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 9/90 (10%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           S K V+N++L  K++      + K   I+    +++++G  N GKSS  N +AK  +A  
Sbjct: 95  SIKAVVNELLQEKHE------RKKAKGIVNITDRVMVVGIPNVGKSSFINKVAKSSIAKT 148

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            D PG TR    I   +    +++ DT GI
Sbjct: 149 GDRPGVTRSRQWIKTKIG---IELMDTPGI 175


>gi|254556448|ref|YP_003062865.1| GTP-binding protein YqeH [Lactobacillus plantarum JDM1]
 gi|254045375|gb|ACT62168.1| GTP-binding protein YqeH [Lactobacillus plantarum JDM1]
          Length = 378

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 21/153 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N +       KD+   +  PGTT D + I LD +G++
Sbjct: 165 EKYRRGRDVYVVGVTNVGKSTLINRIIANNTGLKDLITTSRFPGTTLDKIEIPLD-DGHM 223

Query: 269 VKISDTAGIRETDDIVE------------KEGIKRTFLEVENADLILLLKEINSKKEISF 316
             + DT GI   + +              +  I+    ++ N    L L  +     +  
Sbjct: 224 --MVDTPGIIHPEQMAHVLSGDDLKLVSPQREIRPKGFQLGNGQ-TLFLGGVARLDIVDT 280

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
            K    +++     L+ T TE  D+  +   GE
Sbjct: 281 LKATGTVYVDNNLTLHRTRTENADNFYTKHVGE 313


>gi|226311653|ref|YP_002771547.1| GTP-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226094601|dbj|BAH43043.1| probable GTP-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 305

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGI 277
           + I+G  N GKS+L N +    +AI+++ P TTR+ +T +    EG ++ + DT GI
Sbjct: 15  VSIVGRPNVGKSTLLNHIVGHKIAIMSNKPQTTRNKITAVHTTEEGQIIFL-DTPGI 70


>gi|156353858|ref|XP_001623127.1| predicted protein [Nematostella vectensis]
 gi|156209790|gb|EDO31027.1| predicted protein [Nematostella vectensis]
          Length = 358

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + ++G  N GKSS+ N+L +     V   PG T+ +  + LD     +K+ D+ 
Sbjct: 178 IKTSITVGVVGFPNVGKSSIINSLKRSRTCTVGATPGVTKSMQEVQLDKH---IKLLDSP 234

Query: 276 GIRETDDIVEKEGIKRTFLEVEN 298
           GI       +   I R  +++EN
Sbjct: 235 GIVMDTGDSDAAIILRNCVKIEN 257


>gi|148926637|ref|ZP_01810318.1| GTP-binding protein ERA like protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845156|gb|EDK22251.1| GTP-binding protein ERA like protein [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 291

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           G+ E+   + +  ++     + + D+IL +  +
Sbjct: 60  GLHESGATLNQLLVQSAIKSMGDCDVILFVASV 92


>gi|146284332|ref|YP_001174485.1| GTPase SAR1 [Pseudomonas stutzeri A1501]
 gi|145572537|gb|ABP81643.1| GTPase SAR1 [Pseudomonas stutzeri A1501]
          Length = 457

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L  +D+    V+  P TTR V    L ++G  L+++ DT G+
Sbjct: 6   KLAVVGHTNVGKTSLLRTLT-RDIGFGEVSHRPSTTRHVEGARLSVDGEPLLELYDTPGL 64


>gi|323342059|ref|ZP_08082292.1| GTP-binding protein [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464484|gb|EFY09677.1| GTP-binding protein [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 340

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  NAGKSSL NAL  K+   V+ +  TT DVL I  + E Y   + DT G+    +++
Sbjct: 156 VGCVNAGKSSLLNALMGKNDLSVSPVASTTADVLHI--ETENY--DVYDTPGLSNETNLL 211

Query: 285 EK 286
            K
Sbjct: 212 TK 213


>gi|224003597|ref|XP_002291470.1| gtp-binding protein [Thalassiosira pseudonana CCMP1335]
 gi|220973246|gb|EED91577.1| gtp-binding protein [Thalassiosira pseudonana CCMP1335]
          Length = 446

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS L N+L    VA V+    TTR  +      +   +   DT G    +
Sbjct: 73  VAIVGAPNAGKSQLLNSLIGSKVAAVSRKRHTTRTGILGARTFDDTQLVFIDTPGFLHHE 132

Query: 282 DIVEKEGIKRTF----LEVENADLILLLKEINSKKEISFPKN-IDFIFIGTKS 329
             V KEG+++       E+E+AD +LL+ +   K E    +  +  +F+  +S
Sbjct: 133 MSV-KEGVRKLLGEASSEMESADFVLLVVDAARKMEDDLRRTLVTLMFLALRS 184


>gi|90407846|ref|ZP_01216022.1| hypothetical protein PCNPT3_02225 [Psychromonas sp. CNPT3]
 gi|90311021|gb|EAS39130.1| hypothetical protein PCNPT3_02225 [Psychromonas sp. CNPT3]
          Length = 455

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 10/70 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDV----LTIDLDLEGYLVKISDTA 275
           + ++GH+NAGK+SL   L  +DV    V D  GTTR V    L ID   +   + + DT 
Sbjct: 6   VAVVGHTNAGKTSLIRTLL-RDVTFGEVADSAGTTRHVEGGALVIDASQQ---LALYDTP 61

Query: 276 GIRETDDIVE 285
           G+ ++  ++E
Sbjct: 62  GLEDSSRLLE 71


>gi|77461584|ref|YP_351091.1| GTP-binding protein, HSR1-like [Pseudomonas fluorescens Pf0-1]
 gi|77385587|gb|ABA77100.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 461

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGI 277
           K+ ++GH+N GK+SL   L  +DV    V+  P TTR V    L ++G  L+ + DT G+
Sbjct: 10  KLAVVGHTNVGKTSLLRTLT-RDVGFGEVSHRPSTTRHVEGARLSVDGEPLLDLYDTPGL 68


>gi|115525027|ref|YP_781938.1| GTP-binding protein Era [Rhodopseudomonas palustris BisA53]
 gi|115518974|gb|ABJ06958.1| GTP-binding protein Era [Rhodopseudomonas palustris BisA53]
          Length = 313

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 81/187 (43%), Gaps = 33/187 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280
           + ++G  N GKS+L NAL    V IV+    TTR ++  I +D +  ++ + DT GI   
Sbjct: 23  VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIDNKAQIILV-DTPGIFMP 81

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPK-----NIDFI 323
              +++  +   +    +ADL+ +L +  +              ++  PK      +D +
Sbjct: 82  KRRLDRAMVNTAWSGAHDADLVCVLLDARAGIDEEADALLEKVAKVGHPKILVINKVDIV 141

Query: 324 ----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-- 377
                +    D  +  T +   ++S+ +G+G+ +L    +  L+ +    P+  P  +  
Sbjct: 142 SKEKLLKLAQDANARLTFDETFMVSALSGDGVADL----RHALAARVPPGPYHYPEDQMS 197

Query: 378 ----RHL 380
               RHL
Sbjct: 198 DAPMRHL 204


>gi|118404460|ref|NP_001072877.1| ras and EF-hand domain-containing protein [Xenopus (Silurana)
           tropicalis]
 gi|123884462|sp|Q08CX1|RASEF_XENTR RecName: Full=Ras and EF-hand domain-containing protein
 gi|115313644|gb|AAI24050.1| GTP-binding protein like (XD674) [Xenopus (Silurana) tropicalis]
          Length = 722

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 21/146 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP-GTTRDVLTIDLDLEGYLVKISDTAGI 277
            YKIV+ G +  GKSS    L K +    T    G    + T+ +D E  ++++ DTAG 
Sbjct: 522 AYKIVLAGDAAVGKSSFLMRLCKNEFRGNTSATLGVDFQMKTLVVDGEPTILQLWDTAG- 580

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFI 325
           +E    + K   +R       AD +LLL ++  +K            E +  + I  + +
Sbjct: 581 QERFRSIAKSYFRR-------ADGVLLLYDVTCEKSFLNVREWIDMIEDATSEAIPIMMV 633

Query: 326 GTKSDLYSTYTEEYDHLISSFTGEGL 351
           G K+DL     E+    +S+  GE L
Sbjct: 634 GNKADLRQLMAEQGHICVSTNYGEKL 659


>gi|114762884|ref|ZP_01442316.1| GTP-binding protein HflX [Pelagibaca bermudensis HTCC2601]
 gi|114544494|gb|EAU47501.1| GTP-binding protein HflX [Roseovarius sp. HTCC2601]
          Length = 417

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 25/168 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN L   +V +  D+   T D     + L  G  V +SDT G    
Sbjct: 199 VALVGYTNAGKSTLFNRLTGAEV-MAKDMLFATLDPTMRAVKLPTGIDVILSDTVGFISD 257

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKE----------ISFPKNIDFIFIGT 327
                    + T  EV  AD+I+ +++I   N++++          +   + +  + +  
Sbjct: 258 LPTELVAAFRATLEEVLAADIIVHVRDISHPNTEEQAADVAAILDSLGVDEEVPLVELWN 317

Query: 328 KSD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           K+D          L     EE    +S+ TGEGL+ ++  I   L  +
Sbjct: 318 KTDRLAPDVHEGVLQRAAREENIFAVSALTGEGLDTMLEAITERLQGE 365


>gi|325855172|ref|ZP_08171795.1| ribosome biogenesis GTPase Era [Prevotella denticola CRIS 18C-A]
 gi|325483909|gb|EGC86853.1| ribosome biogenesis GTPase Era [Prevotella denticola CRIS 18C-A]
          Length = 293

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTDDSQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  ++ +   + +AD++L + ++    E    KN+DF+
Sbjct: 69  MQEMMLQFSESALADADVLLYVTDVVENPE----KNMDFL 104


>gi|194397324|ref|YP_002037328.1| GTP-binding proten HflX [Streptococcus pneumoniae G54]
 gi|194356991|gb|ACF55439.1| GTP-binding proten HflX [Streptococcus pneumoniae G54]
          Length = 412

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNILTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPHLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEE----LINKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E     L++KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVEDFTPTQTPYTLISAKSEDSRENLQALLLDKIKEIFEAFTLRVPFS-KSYKIH 375


>gi|149005789|ref|ZP_01829528.1| GTP-binding protein HflX [Streptococcus pneumoniae SP18-BS74]
 gi|307126868|ref|YP_003878899.1| GTP-binding proten HflX [Streptococcus pneumoniae 670-6B]
 gi|147762729|gb|EDK69689.1| GTP-binding protein HflX [Streptococcus pneumoniae SP18-BS74]
 gi|306483930|gb|ADM90799.1| GTP-binding proten HflX [Streptococcus pneumoniae 670-6B]
 gi|332077099|gb|EGI87561.1| GTP-binding proten HflX [Streptococcus pneumoniae GA17545]
          Length = 412

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNILTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPHLTLY 317

Query: 327 TKSDLYSTYTEEYD--HLISSFTGEGLEE----LINKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL   +T       LIS+ + +  E     L++KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVEDFTPTQTPYTLISAKSEDSRENLQALLLDKIKEIFEAFTLRVPFS-KSYKIH 375


>gi|123471281|ref|XP_001318841.1| small GTP-binding protein [Trichomonas vaginalis G3]
 gi|121901610|gb|EAY06618.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
          Length = 192

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 23/175 (13%)

Query: 220 YKIVILGHSNAGKSSLF----NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +KI+ +G ++ GK+S+     + L   +      +   T+ V T         + I DTA
Sbjct: 10  FKIIFVGDASVGKTSVIMRYQHNLFTSEFQSTVGVAFVTKQVTT---SFGAATLNIWDTA 66

Query: 276 GIRETDDIVEKEGIKRT----FLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
           G      +V       T      +V +      L +   + +   P N     +G K DL
Sbjct: 67  GQERYKSLVPMYSRSATAAVIVFDVNDDQSFKSLPQWLEQLKQGLPANCTLFLVGNKIDL 126

Query: 332 YSTYTE-------EYDHL----ISSFTGEGLEELINK-IKSILSNKFKKLPFSIP 374
              Y         E +HL    +S+ TG G++EL N  I++I S K+     +IP
Sbjct: 127 QPDYERAEAIEFAEQNHLRIFFVSALTGAGVQELFNDIIQTIPSKKYNATTETIP 181


>gi|28867669|ref|NP_790288.1| hypothetical protein PSPTO_0439 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28850904|gb|AAO53983.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 462

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  L+++ DT G+
Sbjct: 11  KLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVDGQALLELYDTPGL 69


>gi|327312577|ref|YP_004328014.1| ribosome biogenesis GTPase Era [Prevotella denticola F0289]
 gi|326944896|gb|AEA20781.1| ribosome biogenesis GTPase Era [Prevotella denticola F0289]
          Length = 293

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTDDSQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  ++ +   + +AD++L + ++    E    KN+DF+
Sbjct: 69  MQEMMLQFSESALADADVLLYVTDVVENPE----KNMDFL 104


>gi|268680592|ref|YP_003305023.1| ferrous iron transporter B [Sulfurospirillum deleyianum DSM 6946]
 gi|268618623|gb|ACZ12988.1| ferrous iron transport protein B [Sulfurospirillum deleyianum DSM
           6946]
          Length = 718

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS L NA++  ++ I  +  G T +  T  L  E + ++  D  G+   +
Sbjct: 6   IALVGQPNVGKSHLANAISGSNLKI-GNFAGVTVEKATAHLSKEEFAIEFIDLPGLYSLE 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
           D    E + + FL     DLIL
Sbjct: 65  DFSADEKVTKDFLFKGEYDLIL 86


>gi|260893010|ref|YP_003239107.1| small GTP-binding protein [Ammonifex degensii KC4]
 gi|260865151|gb|ACX52257.1| small GTP-binding protein [Ammonifex degensii KC4]
          Length = 610

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++++G+ N GKS +F  L    V I ++ PGTT +     LDL G  V+I D  G    
Sbjct: 2   KVLLVGNPNVGKSVIFAQLTGTRV-ISSNYPGTTVEYTKGYLDLNGEKVEIIDVPGTYSL 60

Query: 281 DDIVEKEGIKRTFL 294
           D   + E +  + L
Sbjct: 61  DPSCKAEEVAVSML 74


>gi|260583705|ref|ZP_05851453.1| GTP-binding protein HflX [Granulicatella elegans ATCC 700633]
 gi|260158331|gb|EEW93399.1| GTP-binding protein HflX [Granulicatella elegans ATCC 700633]
          Length = 404

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 9/84 (10%)

Query: 201 NDISSHISQGKL----GEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           +DI + + Q KL      + RN   G+++ ++G++NAGKS++ N L       +  +  T
Sbjct: 171 SDIEAQLEQTKLHRQRSRMKRNRSNGFRMGLIGYTNAGKSTVLNQLTDAGTYQMDQLFAT 230

Query: 254 TRDVLTIDLDL-EGYLVKISDTAG 276
             D LT  +DL + Y V ++DT G
Sbjct: 231 L-DPLTRKVDLADQYDVTLTDTVG 253


>gi|226484568|emb|CAX74193.1| Putative guanine nucleotide-binding protein-like 3 homolog
           [Schistosoma japonicum]
          Length = 408

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-- 281
           ++G  N GKS++ N L ++ V +  ++PG TR    + +D   +L+    T   + +D  
Sbjct: 232 VVGLPNTGKSAIINTLKRQKVCVSGNVPGLTRRSQRVRIDKNLFLLDAPGTLVSKSSDAS 291

Query: 282 DIVEKEGIKRTFL 294
           D+V K  IK   L
Sbjct: 292 DLVLKNCIKPEML 304


>gi|300767171|ref|ZP_07077083.1| ribosome biogenesis GTPase YqeH [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308180390|ref|YP_003924518.1| ribosome biogenesis GTPase YqeH [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|300494990|gb|EFK30146.1| ribosome biogenesis GTPase YqeH [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308045881|gb|ADN98424.1| ribosome biogenesis GTPase YqeH [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 378

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 21/153 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N +       KD+   +  PGTT D + I LD +G++
Sbjct: 165 EKYRRGRDVYVVGVTNVGKSTLINRIIANNTGLKDLITTSRFPGTTLDKIEIPLD-DGHM 223

Query: 269 VKISDTAGIRETDDIVE------------KEGIKRTFLEVENADLILLLKEINSKKEISF 316
             + DT GI   + +              +  I+    ++ N    L L  +     +  
Sbjct: 224 --MVDTPGIIHPEQMAHVLSGDDLKLVSPQREIRPKGFQLGNGQ-TLFLGGVARLDIVDT 280

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
            K    +++     L+ T TE  D+  +   GE
Sbjct: 281 LKATGTVYVDNNLTLHRTRTENADNFYTKHVGE 313


>gi|225858500|ref|YP_002740010.1| GTP-binding proten HflX [Streptococcus pneumoniae 70585]
 gi|225720764|gb|ACO16618.1| GTP-binding proten HflX [Streptococcus pneumoniae 70585]
          Length = 412

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNILTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPHLTLY 317

Query: 327 TKSDLYSTY--TEEYDHLISSFTGEGLEE----LINKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL   +  T+    LIS+ + +  E     L++KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVEDFMPTQTPYTLISAKSEDSRENLQALLLDKIKEIFEAFTLRVPFS-KSYKIH 375


>gi|225569770|ref|ZP_03778795.1| hypothetical protein CLOHYLEM_05864 [Clostridium hylemonae DSM
           15053]
 gi|225161240|gb|EEG73859.1| hypothetical protein CLOHYLEM_05864 [Clostridium hylemonae DSM
           15053]
          Length = 729

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 12/90 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VKISD 273
           G KI + G+ N+GK++LFNAL   +   V + PG T +        EG L       I D
Sbjct: 2   GIKIALAGNPNSGKTTLFNALTGSN-QFVGNWPGVTVE------KKEGKLKSNKEAVIMD 54

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLIL 303
             GI        +E + R +L  E  D IL
Sbjct: 55  LPGIYSLSPYTLEEVVARNYLITERPDAIL 84


>gi|221111665|ref|XP_002166609.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 572

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + I+G  N GKSS+ N+L +    +V   PG T+ +  + LD     VK+ D  
Sbjct: 253 IKTSITVGIVGLPNVGKSSVINSLRRSKACLVGSTPGLTKSMQEVQLD---KYVKLLDCP 309

Query: 276 GIRETDDIVEKEGIKRTFLEVE 297
           G+       + + I R  ++VE
Sbjct: 310 GVVMGSSSTDMQVILRNVVKVE 331


>gi|254465678|ref|ZP_05079089.1| GTP-binding protein Era [Rhodobacterales bacterium Y4I]
 gi|206686586|gb|EDZ47068.1| GTP-binding protein Era [Rhodobacterales bacterium Y4I]
          Length = 301

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 30/182 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +  + ++ +  LV + DT 
Sbjct: 4   RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDAQLVFV-DTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL------------------LKEINSKKEISFP 317
           G+ +    +++  +   +    +AD+++L                  L EI   + ++  
Sbjct: 62  GLFKPRRRLDRAMVAAAWGGAADADVVVLMVEAHRGITEGVETILEGLAEIGEGRTVALA 121

Query: 318 KN-IDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            N ID +     +G   DL   Y      +IS+  G G+++L    +  L+ K  + P+ 
Sbjct: 122 INKIDKVPAEKLLGLAQDLNRRYAFAETFMISAERGHGVDDL----RKWLAGKLPESPWL 177

Query: 373 IP 374
            P
Sbjct: 178 YP 179


>gi|146076813|ref|XP_001463009.1| GTPase [Leishmania infantum JPCM5]
 gi|134067091|emb|CAM65355.1| putative GTPase [Leishmania infantum JPCM5]
          Length = 627

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 8/96 (8%)

Query: 198 FLKNDISSHISQ-GKLGEIIRNGYK-------IVILGHSNAGKSSLFNALAKKDVAIVTD 249
           F K ++ S + Q  +L  +   G K       + ++G+ N GKSSL N L +K V  V  
Sbjct: 289 FGKGNVISLLRQFARLHNVTHRGSKRTKTPISVGVIGYPNVGKSSLINTLRRKSVCKVAP 348

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           IPG T+    + L    +L+        RE+++ ++
Sbjct: 349 IPGETKVWQYVALTRSIFLIDCPGVVYDRESNNDIQ 384


>gi|71022057|ref|XP_761259.1| hypothetical protein UM05112.1 [Ustilago maydis 521]
 gi|46097753|gb|EAK82986.1| hypothetical protein UM05112.1 [Ustilago maydis 521]
          Length = 796

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 23/126 (18%)

Query: 204 SSHISQGKLGEIIRNGYK---------IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           S  I  G L ++I+N  +         + + G  N GKSSL N+L +  V  V   PG T
Sbjct: 262 SEAIGAGALLQLIKNYSRSLNLKTSIAVGVFGAPNVGKSSLINSLKRARVCSVASTPGHT 321

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           + V ++ LD     V++ D  GI  +D+ V              A L L  +EI  +++ 
Sbjct: 322 KVVQSVMLDKS---VRLLDCPGIVFSDESVSGA-----------ASLGLSSQEIQIRRQS 367

Query: 315 SFPKNI 320
           +  +N+
Sbjct: 368 ALLRNV 373


>gi|302385384|ref|YP_003821206.1| ferrous iron transport protein B [Clostridium saccharolyticum WM1]
 gi|302196012|gb|ADL03583.1| ferrous iron transport protein B [Clostridium saccharolyticum WM1]
          Length = 727

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRE 279
           KI + G+ N GK++LFNAL   +   V + PG T  V   +  L+G+  V I D  GI  
Sbjct: 4   KIALAGNPNCGKTTLFNALTGSN-QFVGNWPGVT--VEKKEGKLKGHKDVIIMDLPGIYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                 +E + R +L  E  D IL
Sbjct: 61  LSPYTLEEVVARNYLITERPDAIL 84


>gi|154322240|ref|XP_001560435.1| hypothetical protein BC1G_01267 [Botryotinia fuckeliana B05.10]
 gi|150850514|gb|EDN25707.1| hypothetical protein BC1G_01267 [Botryotinia fuckeliana B05.10]
          Length = 617

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+       
Sbjct: 326 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLIDCPGVVP 385

Query: 277 IRETDDIVEKEGIKRTFLEVENAD 300
              TD    ++ + R  + VEN +
Sbjct: 386 PSTTD--TPQDILLRGVVRVENVE 407


>gi|90412087|ref|ZP_01220094.1| GTP-binding protein Era [Photobacterium profundum 3TCK]
 gi|90327065|gb|EAS43444.1| GTP-binding protein Era [Photobacterium profundum 3TCK]
          Length = 301

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  ++ +D   +GY     DT G+   
Sbjct: 10  IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTR-DGYQAVFIDTPGLH-- 66

Query: 281 DDIVEKEGIKR 291
             I EK  I R
Sbjct: 67  --IEEKRTINR 75


>gi|330898784|gb|EGH30203.1| GTP-binding protein, HSR1-related protein [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 321

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGI 277
           ++ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  LV++ DT G+
Sbjct: 11  RLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVDGEALVELYDTPGL 69


>gi|317125654|ref|YP_004099766.1| GTPase EngC [Intrasporangium calvum DSM 43043]
 gi|315589742|gb|ADU49039.1| GTPase EngC [Intrasporangium calvum DSM 43043]
          Length = 344

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 10/67 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNAL---AKKDVAIVTDIPGTTRDVLTIDLDLE----GYLVKI 271
           G   V++GHS  GKS+L NAL   A + + +V D+ G  R   T  + L     G+++  
Sbjct: 209 GRVTVLVGHSGVGKSTLVNALVPGATRAIGVVNDVTGRGRHTSTSAVALRLPEGGWVI-- 266

Query: 272 SDTAGIR 278
            DT GIR
Sbjct: 267 -DTPGIR 272


>gi|310643601|ref|YP_003948359.1| gtpase engb [Paenibacillus polymyxa SC2]
 gi|309248551|gb|ADO58118.1| GTPase EngB [Paenibacillus polymyxa SC2]
          Length = 203

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 27/171 (15%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGI 277
           +I + G SN GKSSL N +  +K++A  +  PG T+ +    ++ E Y V       A +
Sbjct: 25  EIALAGRSNVGKSSLINRMINRKNLARTSSTPGKTQQLNYYRINDELYFVDFPGYGYAKV 84

Query: 278 RETDDIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF-----PKNIDFIFIGTKS 329
            +T      + I+   LE E   L+L    L+   SK +I          +    +GTK+
Sbjct: 85  SKTSRKAWGQMIESYLLEREPLKLVLQMVDLRHPPSKDDIMMYDWLRHNGLPVCVVGTKA 144

Query: 330 D-LYSTYTEEYDHLI---------------SSFTGEGLEELINKIKSILSN 364
           D +  T  E++  +I               SS  G G EEL + I S + N
Sbjct: 145 DKIPKTRREKHYKVIKQELGILPGGLFIPFSSEEGMGKEELWSVISSYIEN 195


>gi|210617942|ref|ZP_03291828.1| hypothetical protein CLONEX_04060 [Clostridium nexile DSM 1787]
 gi|210149081|gb|EEA80090.1| hypothetical protein CLONEX_04060 [Clostridium nexile DSM 1787]
          Length = 416

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 22/164 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAG-IRE 279
           I I+G++NAGKS+L N L   DV +  D    T D  T +L L     V ++DT G IR+
Sbjct: 204 IAIVGYTNAGKSTLLNTLTGADV-LEEDKLFATLDPTTRNLKLPSKQEVLLTDTVGFIRK 262

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEISFP-------KNIDFIFIGT 327
               +  E  K T  E + AD+IL +      +++ +  I +        KN   I    
Sbjct: 263 LPHHL-IEAFKSTLEEAKYADIILHVVDASNPQMDEQMYIVYETLMNLEVKNKPVITAFN 321

Query: 328 KSD------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           K D      +   +  ++   IS+ TGEGLE L N I+ +L  +
Sbjct: 322 KQDKVDGEVILRDFKADHVVNISAKTGEGLENLQNVIEEVLREQ 365


>gi|159025953|emb|CAO86247.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 623

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + EI R    I+++G + AGKSSL N L + D+A V  +P T           EG  + +
Sbjct: 276 ITEIDRQPVNILLVGRTGAGKSSLINTLFRADLAQVDLLPSTDAIQSYHWQTPEGDELIL 335

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            DT G  + +   +++   +     +NADL++L+
Sbjct: 336 WDTPGYEQANRADDRQ---KVLNYAKNADLLILV 366


>gi|149002365|ref|ZP_01827307.1| GTP-binding protein HflX [Streptococcus pneumoniae SP14-BS69]
 gi|237650307|ref|ZP_04524559.1| GTP-binding proten HflX [Streptococcus pneumoniae CCRI 1974]
 gi|237821975|ref|ZP_04597820.1| GTP-binding proten HflX [Streptococcus pneumoniae CCRI 1974M2]
 gi|147759680|gb|EDK66671.1| GTP-binding protein HflX [Streptococcus pneumoniae SP14-BS69]
          Length = 412

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNILTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPHLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEE----LINKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E     L++KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVEDFTPTQTPYTLISAKSEDSRENLQALLLDKIKEIFEAFTLRVPFS-KSYKIH 375


>gi|116617891|ref|YP_818262.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122271908|sp|Q03Y33|ERA_LEUMM RecName: Full=GTPase Era
 gi|116096738|gb|ABJ61889.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 303

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   V   DT G+ +  
Sbjct: 11  VAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDDAQVVFIDTPGVHKPQ 70

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +    +K  F  +  AD I  +
Sbjct: 71  NSLGDFMVKSAFSALHEADAIWFV 94


>gi|332202549|gb|EGJ16618.1| GTP-binding proten HflX [Streptococcus pneumoniae GA41317]
          Length = 412

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNILTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPHLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEE----LINKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E     L++KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVEDFTPTQTPYTLISAKSEDSRENLQALLLDKIKEIFEAFTLRVPFS-KSYKIH 375


>gi|328859396|gb|EGG08505.1| hypothetical protein MELLADRAFT_84686 [Melampsora larici-populina
           98AG31]
          Length = 453

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTR 255
           ND S +       + +  G+KI++ G  N GKSSL NAL      K   A    +PG TR
Sbjct: 158 NDQSKNHHHRNQSDSLSKGFKIMVCGMPNVGKSSLLNALRRVGCQKGKTASEAPMPGHTR 217

Query: 256 DVLTIDLDLE------GYLVKISDTAGI 277
            +  +   LE      G  V + DT GI
Sbjct: 218 SIGGMVKILEACKMSYGKSVYMIDTPGI 245


>gi|312868748|ref|ZP_07728940.1| ribosome biogenesis GTPase YqeH [Lactobacillus oris PB013-T2-3]
 gi|311095734|gb|EFQ53986.1| ribosome biogenesis GTPase YqeH [Lactobacillus oris PB013-T2-3]
          Length = 372

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R+   + ++G +N GKS+L N + K     +D+   +  PGTT D + I LD +G+ 
Sbjct: 162 EKYRHDRDVYVVGVTNVGKSTLINQIIKQRTGVQDLITTSRFPGTTLDEIEIPLD-DGH- 219

Query: 269 VKISDTAGI 277
            K+ DT GI
Sbjct: 220 -KLVDTPGI 227


>gi|299822864|ref|ZP_07054750.1| ribosome biogenesis GTPase YqeH [Listeria grayi DSM 20601]
 gi|299816393|gb|EFI83631.1| ribosome biogenesis GTPase YqeH [Listeria grayi DSM 20601]
          Length = 366

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 8/67 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +R G  + I+G +N GKS+L N + K+     +V   +  PGTT D + I L  +G L  
Sbjct: 157 LRGGEDVYIVGCTNVGKSTLINQIIKRASGESNVVTTSQFPGTTLDKIEIPL-ADGKL-- 213

Query: 271 ISDTAGI 277
           + DT GI
Sbjct: 214 LVDTPGI 220


>gi|311114410|ref|YP_003985631.1| GTP-binding protein HflX [Gardnerella vaginalis ATCC 14019]
 gi|310945904|gb|ADP38608.1| GTP-binding protein HflX [Gardnerella vaginalis ATCC 14019]
          Length = 489

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 27/210 (12%)

Query: 190 KEVLNDILFLKNDIS--SHISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAI 246
           + + N I  L++DI+  +   + K G   R     V ++G++NAGKSS+ N L      +
Sbjct: 235 RAIRNRISKLRHDIALMAPTRETKRGSRRRQDIPTVAVVGYTNAGKSSIINRLTGSKELV 294

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL--- 303
              +  T    +   L  +G    + DT G          E  K T  EV NAD+IL   
Sbjct: 295 ENALFATLDTAVRKSLTKDGRAYTLVDTVGFVRRLPTQLVEAFKSTLEEVGNADVILHVV 354

Query: 304 ------LLKEINSKKE----ISFPKNIDFIFIGTKSD---------LYSTYTEEYDHLIS 344
                  + +I +  E    I   ++I  I    KSD         L S Y +    ++S
Sbjct: 355 DGSHPDPVSQIEAVNEVLAQIDGVEDIAQIIAFNKSDVMQEPMRLRLQSLYPDSL--IVS 412

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           + +G  ++ L  +I+++L +    +  ++P
Sbjct: 413 AASGTNIDRLRTRIENLLPSPHVHVKVTLP 442


>gi|150864563|ref|XP_001383428.2| nuclear/nucleolar GTP-binding protein 2 [Scheffersomyces stipitis
           CBS 6054]
 gi|149385819|gb|ABN65399.2| nuclear/nucleolar GTP-binding protein 2 [Scheffersomyces stipitis
           CBS 6054]
          Length = 534

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    +L+   D  G
Sbjct: 313 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIFLI---DCPG 369

Query: 277 I 277
           I
Sbjct: 370 I 370


>gi|126643102|ref|YP_001086086.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter
           baumannii ATCC 17978]
 gi|166225936|sp|A3M990|ENGB_ACIBT RecName: Full=Probable GTP-binding protein EngB
          Length = 211

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL--------DLEGY 267
           +GY+I   G SNAGKSS  NAL  +K +A  +  PG T+ +    L        DL GY
Sbjct: 13  SGYEIAFAGRSNAGKSSAINALTNQKQLARASKKPGRTQMINFFSLGNPDQRLVDLPGY 71


>gi|332203830|gb|EGJ17897.1| GTP-binding proten HflX [Streptococcus pneumoniae GA47368]
          Length = 392

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 179 FKIGLIGYTNAGKSTIMNILTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 237

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 238 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPHLTLY 297

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEE----LINKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E     L++KIK I      ++PFS  S+K H
Sbjct: 298 NKADLVEDFTPTQTPYTLISAKSEDSRENLQALLLDKIKEIFEAFTLRVPFS-KSYKIH 355


>gi|323343320|ref|ZP_08083547.1| GTP-binding protein Era [Prevotella oralis ATCC 33269]
 gi|323095139|gb|EFZ37713.1| GTP-binding protein Era [Prevotella oralis ATCC 33269]
          Length = 305

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +  
Sbjct: 21  IVGNPNVGKSTLMNQLVGEKISIATFKAQTTRHRIMGIVNTDDAQIVFSDTPGVLKPNYK 80

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  +  +   + +AD++L + ++    E    KNI+F+
Sbjct: 81  LQESMLAFSESALTDADVLLYVTDVVEAPE----KNIEFL 116


>gi|269965461|ref|ZP_06179580.1| GTP-dependent nucleic acid-binding protein engD [Vibrio
           alginolyticus 40B]
 gi|269829940|gb|EEZ84170.1| GTP-dependent nucleic acid-binding protein engD [Vibrio
           alginolyticus 40B]
          Length = 383

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           + +LK+ I+S  ++ KL ++   G+K  I+G  N GKS+LFNAL K  +
Sbjct: 1   MAYLKHKIAS--TRSKLNKVTIMGFKCGIVGLPNVGKSTLFNALTKAGI 47


>gi|260910018|ref|ZP_05916701.1| GTP-binding protein Era [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635848|gb|EEX53855.1| GTP-binding protein Era [Prevotella sp. oral taxon 472 str. F0295]
          Length = 293

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++     +  SDT GI + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTPEVQIVFSDTPGILKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  +  +   + +AD++L + ++    E    KN DF+
Sbjct: 69  LQESMLAFSVSALNDADVLLYVTDVVEDPE----KNADFL 104


>gi|57866703|ref|YP_188393.1| ribosomal biogenesis GTPase [Staphylococcus epidermidis RP62A]
 gi|57637361|gb|AAW54149.1| GTP-binding protein, putative [Staphylococcus epidermidis RP62A]
 gi|329724320|gb|EGG60832.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
           epidermidis VCU144]
          Length = 287

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAK+ +A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSIAETGNKPGVTKQQQWIKV---GKSLQLLDTPGI 175


>gi|27467839|ref|NP_764476.1| ribosomal biogenesis GTPase [Staphylococcus epidermidis ATCC 12228]
 gi|251810676|ref|ZP_04825149.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876323|ref|ZP_06285190.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
           epidermidis SK135]
 gi|293366791|ref|ZP_06613467.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|27315384|gb|AAO04518.1|AE016747_15 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|251805836|gb|EES58493.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295348|gb|EFA87875.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
           epidermidis SK135]
 gi|291319092|gb|EFE59462.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329736354|gb|EGG72626.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
           epidermidis VCU028]
 gi|329736649|gb|EGG72915.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
           epidermidis VCU045]
          Length = 287

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAK+ +A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSIAETGNKPGVTKQQQWIKV---GKSLQLLDTPGI 175


>gi|46109008|ref|XP_381562.1| hypothetical protein FG01386.1 [Gibberella zeae PH-1]
          Length = 618

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G  N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 325 RKQISVGLIGGPNTGKSSIINTLMKKKVCTVAPIPGETKVWQYISLMKRIYLI---DCPG 381

Query: 277 I 277
           I
Sbjct: 382 I 382


>gi|330901524|gb|EGH32943.1| GTP-binding protein YsxC [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 211

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ N IL L    +  +S  K+ +   + G+++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QLKNPILGLCQQATFMLSAAKVDQCPDDEGFEVAFAGRSNAGKSSALNTLTPASLARTSK 61

Query: 250 IPGTTR--DVLTID-----LDLEGY 267
            PG T+  +   +D     +DL GY
Sbjct: 62  TPGRTQLLNFFGLDEDRRLVDLPGY 86


>gi|328957481|ref|YP_004374867.1| GTP-binding protein Era [Carnobacterium sp. 17-4]
 gi|328673805|gb|AEB29851.1| GTP-binding protein Era [Carnobacterium sp. 17-4]
          Length = 302

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N +  + +AI++D   TTR+ +  I    E  +V I DT GI + 
Sbjct: 12  VSIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTTPESQIVFI-DTPGIHKP 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
              +    +   F      D+IL +  I  K+
Sbjct: 71  KHRLGDFMVNSAFSAFREVDVILFMVNITEKR 102


>gi|327482716|gb|AEA86026.1| GTPase SAR1 [Pseudomonas stutzeri DSM 4166]
          Length = 457

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L  +D+    V+  P TTR V    L ++G  L+++ DT G+
Sbjct: 6   KLAVVGHTNVGKTSLLRTLT-RDIGFGEVSHRPSTTRHVEGARLSVDGEPLLELYDTPGL 64


>gi|307718328|ref|YP_003873860.1| ferrous iron transport protein B [Spirochaeta thermophila DSM 6192]
 gi|306532053|gb|ADN01587.1| ferrous iron transport protein B [Spirochaeta thermophila DSM 6192]
          Length = 747

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 10/105 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTA 275
           Y   ++G  N GK+S+FNA+  +    + + PG T +    +LT     E   ++I D  
Sbjct: 4   YTCALIGTPNTGKTSIFNAITSRT-EYIGNWPGVTIERTDGILTTVYQGEDVRLRIVDLP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320
           GI        +E +   F   E  DL+     IN    +S  KN+
Sbjct: 63  GIYHLGSSAPEERVAFDFFLKEKVDLV-----INVMDGLSLQKNL 102


>gi|187778965|ref|ZP_02995438.1| hypothetical protein CLOSPO_02560 [Clostridium sporogenes ATCC
           15579]
 gi|187772590|gb|EDU36392.1| hypothetical protein CLOSPO_02560 [Clostridium sporogenes ATCC
           15579]
          Length = 299

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +++G  N GKSS  N +AK  +A V D PG T+    I   ++   +++ DT G+
Sbjct: 122 RAMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQWIKTKMD---IELMDTPGV 175


>gi|92109566|ref|YP_571853.1| type II secretion system protein E [Nitrobacter hamburgensis X14]
 gi|91802648|gb|ABE65021.1| type II secretion system protein E [Nitrobacter hamburgensis X14]
          Length = 349

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 92/213 (43%), Gaps = 32/213 (15%)

Query: 203 ISSHISQGKLGEIIR----NGYKIVILGHSNAGKSSLFNALAKK---DVAIVTDIPGTTR 255
           +  H+  G++ + IR    N Y I++ G +++GK++  NA+ K+   D  I+T     TR
Sbjct: 144 LCEHLDAGRIEDFIRLAVANRYSILLSGGTSSGKTTFLNAILKEVPVDERIITI--EDTR 201

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK----RTFL-EVENADLILLLKEINS 310
           +V  I  +    +    D    R T + + +  ++    R FL E+  A+    L+ IN+
Sbjct: 202 EVNPIQKNYLPLVASKGDQGEARVTVETLLQASMRLRPDRIFLGEIRGAEAYSFLRAINT 261

Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL--EELINKIKSILSNKFKK 368
                 P +I  +   + +  +     E   L+    G GL  +E++  IKS+       
Sbjct: 262 ----GHPGSITTVHADSPAGAF-----EQLALMVMQAGLGLRRDEIVGYIKSV------- 305

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           LP  I   K   +  +  V +  MA   E+  G
Sbjct: 306 LPIVIQQTKVGGWRGTSAVHFSRMAEWREQRTG 338


>gi|23957813|gb|AAN40826.1| unknown [Synechococcus elongatus PCC 7942]
          Length = 613

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           + +++G + AGKSSL NAL + + AIV  +P T   + T D  L+ G  +++ D+ G  +
Sbjct: 280 RFLLIGRTGAGKSSLINALFQTETAIVDCLPSTP-AIQTYDWQLDNGDRLQLLDSPGYEQ 338

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
                  E +       + AD ++LL
Sbjct: 339 AGRFDLWESV---LTAADTADAVVLL 361


>gi|332671678|ref|YP_004454686.1| GTPase EngC [Cellulomonas fimi ATCC 484]
 gi|332340716|gb|AEE47299.1| GTPase EngC [Cellulomonas fimi ATCC 484]
          Length = 377

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLT----IDLDLEGY 267
           +++  G  +V++G S AGKS+L NALA + V  V +    G  R   T    + L     
Sbjct: 208 DVVTPGSTLVVVGPSGAGKSTLVNALAGRPVMDVGERRADGKGRHTTTHRELVPLADGAV 267

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LV   DT GIR    + + + ++ TF +V +
Sbjct: 268 LV---DTPGIRTVGVVADTDALETTFADVAD 295


>gi|319401465|gb|EFV89675.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
          Length = 287

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAK+ +A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSIAETGNKPGVTKQQQWIKV---GKSLQLLDTPGI 175


>gi|295399251|ref|ZP_06809233.1| ribosome biogenesis GTPase YqeH [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978717|gb|EFG54313.1| ribosome biogenesis GTPase YqeH [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 367

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 15/100 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+  N +      K +V   +  PGTT D++ I LD        
Sbjct: 158 RLGKNVYVVGCTNVGKSTFINRIIQETTGKGNVITTSYFPGTTLDIIEIPLD-------- 209

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            D A + +T  I+    +   F++ ++  +I   +EI+ K
Sbjct: 210 -DGAALYDTPGIINHHQMAH-FVDKKDLKIITPKREIHPK 247


>gi|226227819|ref|YP_002761925.1| putative GTP-binding protein EngB [Gemmatimonas aurantiaca T-27]
 gi|259645897|sp|C1AB49|ENGB_GEMAT RecName: Full=Probable GTP-binding protein EngB
 gi|226091010|dbj|BAH39455.1| putative GTP-binding protein EngB [Gemmatimonas aurantiaca T-27]
          Length = 204

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 8/55 (14%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL-------DLEGY 267
           +I  +G SN GKSSL N L  +K  A V+  PG TR++   D+       DL GY
Sbjct: 26  EIAFVGRSNVGKSSLLNKLMRRKSFARVSTTPGRTREIHFFDVNHQFVLADLPGY 80


>gi|153206772|ref|ZP_01945613.1| GTP-binding proten HflX [Coxiella burnetii 'MSU Goat Q177']
 gi|212218440|ref|YP_002305227.1| GTP-binding protein [Coxiella burnetii CbuK_Q154]
 gi|120577135|gb|EAX33759.1| GTP-binding proten HflX [Coxiella burnetii 'MSU Goat Q177']
 gi|212012702|gb|ACJ20082.1| GTP-binding protein [Coxiella burnetii CbuK_Q154]
          Length = 454

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 25/166 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE- 279
           + ++G++NAGKS+LFNA+ + +V     +  T       ++L   G ++ +     IR+ 
Sbjct: 206 VSLVGYTNAGKSTLFNAITEANVYTADQLFATLDPTFRQLELPTLGKIILVDTVGFIRDL 265

Query: 280 TDDIVEKEGIKRTFLEVENADLIL------------LLKEINSKKEISFPKNIDFIFIGT 327
             D++     + T  E   ADL+L            +L+E+    E    + +  +FI  
Sbjct: 266 PHDLI--AAFRATLEESRQADLLLHVVDPHSPDSSVMLEEVQKVLETIGAEEVPQLFIYN 323

Query: 328 KSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSN 364
           K DL  +     D+          +S+ TG G++ L   I  +L +
Sbjct: 324 KIDLLESRKPRIDYDEKGKPRRVWLSALTGVGIDLLNPAIVELLGD 369


>gi|154706483|ref|YP_001424421.1| GTP-binding protein [Coxiella burnetii Dugway 5J108-111]
 gi|165918612|ref|ZP_02218698.1| GTP-binding proten HflX [Coxiella burnetii RSA 334]
 gi|154355769|gb|ABS77231.1| GTP-binding protein [Coxiella burnetii Dugway 5J108-111]
 gi|165917740|gb|EDR36344.1| GTP-binding proten HflX [Coxiella burnetii RSA 334]
          Length = 454

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 25/166 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE- 279
           + ++G++NAGKS+LFNA+ + +V     +  T       ++L   G ++ +     IR+ 
Sbjct: 206 VSLVGYTNAGKSTLFNAITEANVYTADQLFATLDPTFRQLELPTLGKIILVDTVGFIRDL 265

Query: 280 TDDIVEKEGIKRTFLEVENADLIL------------LLKEINSKKEISFPKNIDFIFIGT 327
             D++     + T  E   ADL+L            +L+E+    E    + +  +FI  
Sbjct: 266 PHDLI--AAFRATLEESRQADLLLHVVDAHSPDSSVMLEEVQKVLETIGAEEVPQLFIYN 323

Query: 328 KSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSN 364
           K DL  +     D+          +S+ TG G++ L   I  +L +
Sbjct: 324 KIDLLESRKPRIDYDEKGKPRRVWLSALTGVGIDLLNPAIVELLGD 369


>gi|31076686|sp|Q89AD0|ENGB_BUCBP RecName: Full=Probable GTP-binding protein EngB
          Length = 228

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 219 GYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR 255
           G ++  +G+SN+GKSS+ NAL  +K +A ++  PG TR
Sbjct: 49  GLEVAFVGYSNSGKSSIINALTNQKKLAKISRTPGRTR 86


>gi|332705323|ref|ZP_08425401.1| small GTP-binding protein domain protein [Lyngbya majuscula 3L]
 gi|332355683|gb|EGJ35145.1| small GTP-binding protein domain protein [Lyngbya majuscula 3L]
          Length = 523

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRE 279
           +V+ G  +AGK+SL NAL  + V  V    GTT    T  L L+G    + I+DT GI E
Sbjct: 132 VVVFGTGSAGKTSLVNALIGRMVGQVGAPMGTTEVGETYKLKLKGLERPILITDTPGILE 191

Query: 280 TDDI-VEKEGIKRTFLEVENADLILLL 305
           +  +  ++E   R       ADL+L +
Sbjct: 192 SGVVGTQREQWARHL--ATEADLLLFV 216


>gi|300176952|emb|CBK25521.2| unnamed protein product [Blastocystis hominis]
          Length = 551

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  GI
Sbjct: 311 IGYPNVGKSSIINTLKKKQVCKVAPIPGETKVWQYITLLRNIYLI---DCPGI 360


>gi|255036879|ref|YP_003087500.1| GTP-binding proten HflX [Dyadobacter fermentans DSM 18053]
 gi|254949635|gb|ACT94335.1| GTP-binding proten HflX [Dyadobacter fermentans DSM 18053]
          Length = 411

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 32/188 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++ I+G++N GKS+L   L+K DV     +   +  T R V     ++E     ++DT G
Sbjct: 208 RVAIVGYTNVGKSTLMRNLSKADVFAENKLFATVDSTVRKV-----NMENIPFLLTDTVG 262

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-------------- 322
                     E  K T  EV  AD+++ + +I+     SF +++D               
Sbjct: 263 FIRKLPTTLIESFKSTLDEVREADILMHVVDIS---HASFEEHLDVVNKTLEEIGAANKP 319

Query: 323 -IFIGTKSDLY--STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            I +  K DLY  S   EE +   +  T E L++L    +S ++ K   + F     K +
Sbjct: 320 SILVFNKIDLYKPSYNDEEEEQAAAPSTQEILDQL---KRSYIAEKADHVVFISAQEKEN 376

Query: 380 LYHLSQTV 387
           +  L +T+
Sbjct: 377 IDELKRTL 384


>gi|261350269|ref|ZP_05975686.1| gtp-binding protein, Gtp1/obg family [Methanobrevibacter smithii
           DSM 2374]
 gi|288861054|gb|EFC93352.1| gtp-binding protein, Gtp1/obg family [Methanobrevibacter smithii
           DSM 2374]
          Length = 336

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 26/160 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IVI G  N GKS+L N ++  D  I  + P TT+ +    ++     ++I DT G+ +  
Sbjct: 165 IVIAGFPNVGKSTLLNQISGADPQI-ANYPFTTKGIQIGHVERHWKSIQIIDTPGLLDR- 222

Query: 282 DIVEKEGIK-RTFLEVEN-ADLILLL------------KEINSKKEI-SFPKNIDFIFIG 326
            ++E   I+    + +E+ AD IL +             + N  K+I     NI  I++ 
Sbjct: 223 PVLEMNDIELNAIVALEHLADAILFIFDASETCGFGLESQYNLLKQIEKIFDNIPVIYLF 282

Query: 327 TKSDLY--STYTEEY-DHL-----ISSFTGEGLEELINKI 358
            K DL   ++Y E+Y D L     IS+  GEG+++ INK+
Sbjct: 283 NKMDLIEDTSYVEQYVDELDNSIFISAIEGEGIDK-INKV 321


>gi|213965802|ref|ZP_03393994.1| GTP-binding protein Era [Corynebacterium amycolatum SK46]
 gi|213951561|gb|EEB62951.1| GTP-binding protein Era [Corynebacterium amycolatum SK46]
          Length = 319

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ + I+G  N GKS+L N+L  + +AI  + P TTR  +   +  E   + + D
Sbjct: 24  EGFRSGF-VSIVGRPNTGKSTLTNSLVGEKIAITANQPETTRHPVRGVVHRENCQIVVVD 82

Query: 274 TAGI 277
           T G+
Sbjct: 83  TPGL 86


>gi|239616939|ref|YP_002940261.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1]
 gi|259645901|sp|C5CEL1|ENGB_KOSOT RecName: Full=Probable GTP-binding protein EngB
 gi|239505770|gb|ACR79257.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1]
          Length = 190

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT--AGIRE 279
           +   G SN GKS+L N L ++ +A  +  PG TR +    ++ + Y V +     A   +
Sbjct: 26  VAFAGRSNVGKSTLLNTLFQRKLAHTSSKPGKTRSINFYLVNSKYYFVDLPGYGFASASK 85

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL------KEINSKKEISFPKN--IDFIFIGTKSD 330
            +    KE I+  F   +N +L+ +L       + N  K + + K+  I FI + TK+D
Sbjct: 86  QELARWKELIEDYFSTRDNLNLVTILMDSRHPMQKNDYKMLEWIKDYSIPFIVVLTKTD 144


>gi|209963483|ref|YP_002296398.1| GTP-binding protein hflX, putative [Rhodospirillum centenum SW]
 gi|209956949|gb|ACI97585.1| GTP-binding protein hflX, putative [Rhodospirillum centenum SW]
          Length = 430

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 32/168 (19%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y +V L G++NAGKS+LFN +A  DV    D+   T D     + L     + +SDT G 
Sbjct: 181 YPVVALVGYTNAGKSTLFNRMAGADV-FAKDLLFATLDPTMRAITLPSNRKIILSDTVGF 239

Query: 278 RETDDIVEK--EGIKRTFLEVENADLILLLKEI------------------------NSK 311
               D+     E  + T  EV+ AD++L ++++                        +  
Sbjct: 240 --ISDLPHGLVEAFRATLEEVQAADIVLHVRDVSHPDTEAQKADVETVLRELGIEVDSDA 297

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKI 358
           + +     ID +  G +  L        D + IS+ TGEGL  L + I
Sbjct: 298 RVVEVLNKIDLVPEGERDALLRQARRTGDTVAISALTGEGLGGLFDLI 345


>gi|148989044|ref|ZP_01820444.1| GTP-binding protein HflX [Streptococcus pneumoniae SP6-BS73]
 gi|148992218|ref|ZP_01821941.1| ribonuclease Z [Streptococcus pneumoniae SP9-BS68]
 gi|168488353|ref|ZP_02712552.1| GTP-binding protein HflX [Streptococcus pneumoniae SP195]
 gi|147925541|gb|EDK76618.1| GTP-binding protein HflX [Streptococcus pneumoniae SP6-BS73]
 gi|147928844|gb|EDK79856.1| ribonuclease Z [Streptococcus pneumoniae SP9-BS68]
 gi|183572930|gb|EDT93458.1| GTP-binding protein HflX [Streptococcus pneumoniae SP195]
 gi|332074477|gb|EGI84953.1| GTP-binding proten HflX [Streptococcus pneumoniae GA17570]
 gi|332075966|gb|EGI86432.1| GTP-binding proten HflX [Streptococcus pneumoniae GA41301]
          Length = 412

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNILTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPHLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEE----LINKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E     L++KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVEDFTPTQTPYTLISAKSEDSRENLQALLLDKIKEIFEAFTLRVPFS-KSYKIH 375


>gi|220928166|ref|YP_002505075.1| GTP1/OBG protein [Clostridium cellulolyticum H10]
 gi|219998494|gb|ACL75095.1| GTP1/OBG protein [Clostridium cellulolyticum H10]
          Length = 292

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           I  + ++GKL   +R     +++G  N GKSS  N +  K  A+  D PG TR    I +
Sbjct: 108 IERNRAKGKLFTPVRT----MVVGIPNVGKSSFINKIVGKATAVTGDRPGVTRGKQWIRI 163

Query: 263 DLEGYLVKISDTAGI 277
             E  L+   DT GI
Sbjct: 164 SSEMELL---DTPGI 175


>gi|169773391|ref|XP_001821164.1| nucleolar GTP-binding protein 2 [Aspergillus oryzae RIB40]
 gi|83769025|dbj|BAE59162.1| unnamed protein product [Aspergillus oryzae]
          Length = 559

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 326 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLI---DCPG 382

Query: 277 I 277
           +
Sbjct: 383 V 383


>gi|332359393|gb|EGJ37213.1| GTP-binding protein HflX [Streptococcus sanguinis SK355]
          Length = 412

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T +++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKSQYEADELFATL-DATTKNINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLV 282


>gi|261211807|ref|ZP_05926094.1| GTPase EngC family protein [Vibrio sp. RC341]
 gi|260839157|gb|EEX65789.1| GTPase EngC family protein [Vibrio sp. RC341]
          Length = 349

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 65/163 (39%), Gaps = 17/163 (10%)

Query: 162 IDKLTHIRSF-IEADLDFSEEEDVQNFSSKEVLNDILFLKN-DISSHISQGKLGEIIRNG 219
           I K  HI    I    D SE+ D QN +  + L+  L++   +     S   L      G
Sbjct: 129 IAKEAHIEPVVILTKADLSEQAD-QNIAQVQKLSATLWVAAVNALEPTSVEALRPWCTKG 187

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRDVLTIDLDLEGYLVK 270
             +  +G S  GKS+L N L   +  +   I           T R V  I    EG L  
Sbjct: 188 RTVAFIGSSGVGKSTLTNTLLGSETQLTGGIREDDSKGRHTTTARSVHMIP---EGAL-- 242

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           I DT G+RE   +   EG+  TF ++E   L    K+   + E
Sbjct: 243 IIDTPGMRELQLVDCGEGVSETFSDIETLALHCRFKDCQHQTE 285


>gi|255994492|ref|ZP_05427627.1| GTP-binding protein Era [Eubacterium saphenum ATCC 49989]
 gi|255993205|gb|EEU03294.1| GTP-binding protein Era [Eubacterium saphenum ATCC 49989]
          Length = 301

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           E +++G+ I I+G  N GKS+L N +    VAI T  P TTR+ +
Sbjct: 6   EYMKSGF-ISIIGRPNTGKSTLLNMIIGTKVAIATPKPQTTRNTI 49


>gi|242242527|ref|ZP_04796972.1| GTP-binding protein [Staphylococcus epidermidis W23144]
 gi|242233954|gb|EES36266.1| GTP-binding protein [Staphylococcus epidermidis W23144]
          Length = 287

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LAK+ +A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSIAETGNKPGVTKQQQWIKV---GKSLQLLDTPGI 175


>gi|307150638|ref|YP_003886022.1| GTP-binding protein HSR1-like protein [Cyanothece sp. PCC 7822]
 gi|306980866|gb|ADN12747.1| GTP-binding protein HSR1-related protein [Cyanothece sp. PCC 7822]
          Length = 649

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E+ +    I+++G + AGKSSL N L + ++A V  +P T +          G  + + D
Sbjct: 292 EVEQKPLNILVVGRTGAGKSSLINTLFQSELAEVDVLPSTEQISQYHWKSKSGDHLSLWD 351

Query: 274 TAGIRETDDIVEKEGIKRTFLE-VENADLILLLKEINSKKEISFPKNIDFI 323
           T G  +    V++E ++   L+    ADL+LL   IN   + +   ++DF+
Sbjct: 352 TPGYEQ----VKREDLRELVLDYATTADLLLL---INPALDPALQMDVDFL 395


>gi|167758981|ref|ZP_02431108.1| hypothetical protein CLOSCI_01327 [Clostridium scindens ATCC 35704]
 gi|167663388|gb|EDS07518.1| hypothetical protein CLOSCI_01327 [Clostridium scindens ATCC 35704]
          Length = 282

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I+    + +++G  N GKS+  NALA K  A   + PG T+    I L+ +   V++ DT
Sbjct: 116 ILNRPVRAMVVGIPNVGKSTFINALAGKACAKTGNKPGVTKGKQWIRLNKQ---VELLDT 172

Query: 275 AGIRETDDIVEKEGIKRTFL 294
            GI       +K G++  F+
Sbjct: 173 PGILWPKFEDQKVGLRLAFI 192


>gi|119774018|ref|YP_926758.1| GTP-binding protein Era [Shewanella amazonensis SB2B]
 gi|119766518|gb|ABL99088.1| GTP-binding protein Era [Shewanella amazonensis SB2B]
          Length = 332

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N L K+ ++I +  P TTR  ++ I  +    +V I DT G+   
Sbjct: 41  VAIVGRPNVGKSTLLNKLLKQKISITSRKPQTTRHRIMGIHTEGPNQIVFI-DTPGLH-- 97

Query: 281 DDIVEKEGIKR 291
             I EK  I R
Sbjct: 98  --IEEKRAINR 106


>gi|270339920|ref|ZP_06006458.2| GTP-binding protein Era [Prevotella bergensis DSM 17361]
 gi|270333271|gb|EFA44057.1| GTP-binding protein Era [Prevotella bergensis DSM 17361]
          Length = 310

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++     +  SDT G+ + +  
Sbjct: 26  IVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTPEMQIVFSDTPGVLKPNYK 85

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  +  +   + +AD++L + ++    E    KN+DF+
Sbjct: 86  MQEMMLAFSESALSDADILLYVTDVVENPE----KNMDFL 121


>gi|266622493|ref|ZP_06115428.1| ferrous iron transport protein B [Clostridium hathewayi DSM 13479]
 gi|288865781|gb|EFC98079.1| ferrous iron transport protein B [Clostridium hathewayi DSM 13479]
          Length = 338

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N GK++LFNA     +  V + PG T + +  +   +G  +++ DT GI       
Sbjct: 13  VGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERVEGETSYKGRPIRVIDTPGIYSLTSYT 71

Query: 285 EKEGIKRTFLEVENADLIL 303
            +E + R  +E    D+I+
Sbjct: 72  IEEKVTRKCIEDGEVDVII 90


>gi|253681828|ref|ZP_04862625.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium botulinum
           D str. 1873]
 gi|253561540|gb|EES90992.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium botulinum
           D str. 1873]
          Length = 280

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 14/119 (11%)

Query: 160 QWIDKLTHIRSFIE-ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN 218
           +WI KL++   FI  A+++    + +   S K ++ND+L  K+D      + +   ++  
Sbjct: 70  EWIKKLSN--EFIRVANVNCVTGKGLN--SIKPMINDLLKEKHD------RLRAKGVVNI 119

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
             + +++G  N GKSS  N +A+ + A V D PG T++   I   +    +++ DT G+
Sbjct: 120 TTRAMVVGIPNVGKSSFINKMARNNTAKVGDKPGVTKNKQWIKTKMG---IELLDTPGV 175


>gi|227432225|ref|ZP_03914221.1| GTP-binding protein Era [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351998|gb|EEJ42228.1| GTP-binding protein Era [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 303

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   V   DT G+ +  
Sbjct: 11  VAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDDAQVVFIDTPGVHKPQ 70

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +    +K  F  +  AD I  +
Sbjct: 71  NSLGDFMVKSAFSALHEADAIWFV 94


>gi|254519207|ref|ZP_05131263.1| ribosomal biogenesis GTPase [Clostridium sp. 7_2_43FAA]
 gi|226912956|gb|EEH98157.1| ribosomal biogenesis GTPase [Clostridium sp. 7_2_43FAA]
          Length = 289

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++   +++++G  N GKS+  N +AK ++A   D PG T+    I   ++   +++ DT
Sbjct: 117 LVKIQMRVMVVGIPNVGKSTFINKMAKNNIAKTGDRPGVTKSKQWIKTKMD---IEMLDT 173

Query: 275 AGI 277
            G+
Sbjct: 174 PGV 176


>gi|119945814|ref|YP_943494.1| GTP-binding protein, HSR1-related [Psychromonas ingrahamii 37]
 gi|119864418|gb|ABM03895.1| GTP-binding protein, HSR1-related [Psychromonas ingrahamii 37]
          Length = 523

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV++G +NAGKSS+ N L  + VA V DI  +T+        L    V+I D  G+   
Sbjct: 293 RIVMVGQTNAGKSSIINVLKNELVAEV-DILPSTKGATVYTAMLNDAEVRIVDLHGLNGD 351

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +   +KE +    LE+ +ADLI+ + + N
Sbjct: 352 E---KKETL--MLLEMTHADLIVWVLKAN 375


>gi|119944413|ref|YP_942093.1| GTP-binding protein Era [Psychromonas ingrahamii 37]
 gi|119863017|gb|ABM02494.1| GTP-binding protein Era [Psychromonas ingrahamii 37]
          Length = 300

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L NAL  + V+I +    TTR  + + +D EG Y     DT G+   
Sbjct: 8   VAIVGRPNVGKSTLINALLGQKVSITSRKAQTTRHRI-LGIDTEGDYQTIFVDTPGLH-- 64

Query: 281 DDIVEKEGIKR 291
             I EK  I R
Sbjct: 65  --IEEKRAINR 73


>gi|15231373|ref|NP_187361.1| GTP-binding family protein [Arabidopsis thaliana]
 gi|6729012|gb|AAF27009.1|AC016827_20 putative GTPase [Arabidopsis thaliana]
 gi|332640972|gb|AEE74493.1| putative GTP-binding protein [Arabidopsis thaliana]
          Length = 582

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I  LKN   SH         ++    + I+G  N GKSSL N+L +  V  V   PG TR
Sbjct: 238 IKLLKNYSRSHE--------LKKSITVGIIGLPNVGKSSLINSLKRAHVVNVGATPGLTR 289

Query: 256 DVLTIDLDLEGYLVKISDTAGI 277
            +  + LD     VK+ D  G+
Sbjct: 290 SLQEVHLDKN---VKLLDCPGV 308


>gi|60653361|gb|AAX29375.1| RAS-like estrogen-regulated growth inhibitor [synthetic construct]
          Length = 200

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 31/154 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           K+ I G +  GKS+L      K      D  +  T R   TID ++    ++I DTAG  
Sbjct: 8   KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVS--MEILDTAG-- 63

Query: 279 ETDDIVEKEGIKRT---FLEVENA------DLILLLKEINSKKEISFPKNIDFIFIGTKS 329
             +D +++EG  R    F+ V +       + +L LK I    EI  PKN+  I +G K+
Sbjct: 64  -QEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILD--EIKKPKNVTLILVGNKA 120

Query: 330 DL---YSTYTEEYDHL----------ISSFTGEG 350
           DL       TEE + L           S+ TGEG
Sbjct: 121 DLDHSRQVSTEEGEKLATELACAFYECSACTGEG 154


>gi|78183961|ref|YP_376396.1| putative GTP-binding protein, transporter associated [Synechococcus
           sp. CC9902]
 gi|78168255|gb|ABB25352.1| putative GTP-binding protein, transporter associated [Synechococcus
           sp. CC9902]
          Length = 555

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 96/207 (46%), Gaps = 32/207 (15%)

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+D +  S +  +  +L  +  + +H S  +L +  R   ++ ++G++NAGKSSL NAL 
Sbjct: 335 EKDRRAISRR--IERLLRDQQQLQAHRS--RLRDQRRGLPRVALVGYTNAGKSSLLNALC 390

Query: 241 KK---DVAIVTDIPGTTRDVLTIDLDL-----EGYLVKISDTAG-IRETDDIVEKEGIKR 291
            +   D  +  +    T D  T  LDL         + ++DT G IR+    +  E  + 
Sbjct: 391 GQRESDRVLAENKLFATLDPTTRKLDLPRPGERPQRMLLTDTVGFIRDLPKPL-VEAFRA 449

Query: 292 TFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKS---------------DLYST 334
           T  E  +ADL+L++ ++     +     +  +   +G+ +                ++S 
Sbjct: 450 TLEEALDADLLLIVVDLADPDWVGQLSTVHRLLDSLGSSALRRVVANQIDRCELEAIHSI 509

Query: 335 YTEEYDHL-ISSFTGEGLEELINKIKS 360
             +E D L +S+  G+GL+ L + ++S
Sbjct: 510 RDQEPDALFLSAVRGDGLQGLQDWLRS 536


>gi|51246705|ref|YP_066589.1| hypothetical protein DP2853 [Desulfotalea psychrophila LSv54]
 gi|50877742|emb|CAG37582.1| hypothetical protein DP2853 [Desulfotalea psychrophila LSv54]
          Length = 466

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGIR 278
           +  I+GH N GKSS+ + LA+ D   ++  PG T       I++D +  +++ +DT G +
Sbjct: 4   EFAIMGHPNEGKSSVLSTLAEDDSVRISSSPGETTLCQSFVINIDDQD-ILRFTDTPGFQ 62

Query: 279 ETDDIV 284
             + I+
Sbjct: 63  NPNRIL 68


>gi|88810679|ref|ZP_01125936.1| GTP-binding protein, HSR1-related [Nitrococcus mobilis Nb-231]
 gi|88792309|gb|EAR23419.1| GTP-binding protein, HSR1-related [Nitrococcus mobilis Nb-231]
          Length = 509

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 20/151 (13%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRETD 281
            ++GH N GKSS+   LA+ +   ++ IPGTT       + ++G +  I  DT G +   
Sbjct: 7   AVVGHPNKGKSSIVATLAQDNSVQISPIPGTTVKCRHFPMKVDGEVQYILVDTPGFQRAR 66

Query: 282 DIV-----------EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
            ++           E+  + R F+E E+        E    K +     I ++  G++  
Sbjct: 67  QVLAWMKARASTAAERVNVVRQFVE-EHEKSGRFPDECELLKPLLDGAGILYVIDGSRP- 124

Query: 331 LYSTYTEEYDH--LISSFTGEGLEELINKIK 359
               Y EEY+    I  +TG+    LIN I+
Sbjct: 125 ----YGEEYEAEMEILRWTGQPSIALINMIR 151


>gi|328870179|gb|EGG18554.1| Putative GTP-binding protein [Dictyostelium fasciculatum]
          Length = 794

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N GKSS+ N L  K V     IPG T+    I L    YL+   D  G+  T    
Sbjct: 314 VGYPNVGKSSIINTLKAKKVCRAAPIPGETKVWQYITLTKRIYLI---DCPGVVPTTGDT 370

Query: 285 EKEGIKRTFLEVEN 298
           E E + +  + VEN
Sbjct: 371 EGELVLKGVVRVEN 384


>gi|327470774|gb|EGF16230.1| GTP-binding protein HflX [Streptococcus sanguinis SK330]
          Length = 412

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T +++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKSQYEADELFATL-DATTKNINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLV 282


>gi|313205716|ref|YP_004044893.1| GTP-binding protein era [Riemerella anatipestifer DSM 15868]
 gi|312445032|gb|ADQ81387.1| GTP-binding protein Era [Riemerella anatipestifer DSM 15868]
 gi|315022889|gb|EFT35913.1| GTP-binding protein Era [Riemerella anatipestifer RA-YM]
 gi|325336843|gb|ADZ13117.1| GTPase [Riemerella anatipestifer RA-GD]
          Length = 291

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 10/93 (10%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  NAGKS+L N L  + +AIVT    TTR  +    +     +  SDT G+ +    
Sbjct: 9   IVGKPNAGKSTLLNQLMGEKLAIVTKKAQTTRHRIFGIYNEPDLQIVFSDTPGVLDP--- 65

Query: 284 VEKEGIKRTFLE-----VENADLILLLKEINSK 311
             K G++   ++     +++AD+ L + ++  K
Sbjct: 66  --KYGLQEKMMDFVKDSLQDADVFLFIVDVTDK 96


>gi|284929093|ref|YP_003421615.1| Ras superfamily GTP-binding protein YlqF [cyanobacterium UCYN-A]
 gi|284809552|gb|ADB95257.1| Ras superfamily GTP-binding protein YlqF [cyanobacterium UCYN-A]
          Length = 278

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 32/172 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           + V++G  N GKS+L N L  + VAI     G TR +  I +      +++ D  G+   
Sbjct: 123 RAVVIGFPNVGKSALINRLLGRKVAISARRAGVTRQLQWIRIS---KTIELLDAPGVIPI 179

Query: 281 DDIVEKEGIKRTFLE------VEN----ADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
               +K  IK    E       +N    A LI LL E+N +K +     ID + I     
Sbjct: 180 KLENQKNAIKLAICEDIGEAAYDNQQVAAKLIDLLLELNFEKTLQLRYGIDPLGIS---- 235

Query: 331 LYSTYTEEY-DHLISSFTGEGLEELINKIKSILSNKFKK-----LPFSIPSH 376
                 E+Y + L SSF   G E    ++   L N F+K     +P  +P +
Sbjct: 236 -----GEQYIEKLESSFYKGGKE----RVAMQLLNDFRKGIMGCIPLELPKN 278


>gi|255657229|ref|ZP_05402638.1| putative ferrous iron transport protein B [Clostridium difficile
           QCD-23m63]
          Length = 147

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 10/79 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIR 278
           + +LG+ N GK+++FN L   +   V + PG T +        EG+L   +K+ D  GI 
Sbjct: 4   VALLGNPNVGKTTVFNLLTGSN-QYVGNWPGVTIE------KKEGFLGKEIKVVDLPGIY 56

Query: 279 ETDDIVEKEGIKRTFLEVE 297
             D    +E + +++LE E
Sbjct: 57  AMDTFSNEEKVSKSYLENE 75


>gi|221060018|ref|XP_002260654.1| GTPase [Plasmodium knowlesi strain H]
 gi|193810728|emb|CAQ42626.1| GTPase, putative [Plasmodium knowlesi strain H]
          Length = 499

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 14/93 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS------DT 274
           KI ++G  NAGKSSL N++  K ++ V+    TTR       D++G   K +      D+
Sbjct: 106 KIALIGAPNAGKSSLLNSILNKTISAVSPKINTTRQ------DIKGIYTKDNVQLIFIDS 159

Query: 275 AGIRETDDIVE--KEGIKRTFLEVENADLILLL 305
            GI  +    +  KE +   +   E ADLIL +
Sbjct: 160 PGIVPSHKKKKFCKELVSYAWKGYEEADLILFV 192


>gi|194900518|ref|XP_001979804.1| GG16794 [Drosophila erecta]
 gi|190651507|gb|EDV48762.1| GG16794 [Drosophila erecta]
          Length = 581

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L +    +V   PG T+ +  ++LD +   +K+ D  
Sbjct: 264 IKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKAMQEVELDSK---IKLIDCP 320

Query: 276 GI 277
           GI
Sbjct: 321 GI 322


>gi|156400730|ref|XP_001638945.1| predicted protein [Nematostella vectensis]
 gi|156226070|gb|EDO46882.1| predicted protein [Nematostella vectensis]
          Length = 398

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + ++G  N GKSS+ N+L +     V   PG T+ +  + LD     +K+ D+ 
Sbjct: 213 IKTSITVGVVGFPNVGKSSIINSLKRSRTCTVGATPGVTKSMQEVQLDKH---IKLLDSP 269

Query: 276 GI 277
           GI
Sbjct: 270 GI 271


>gi|56750406|ref|YP_171107.1| hypothetical protein syc0397_d [Synechococcus elongatus PCC 6301]
 gi|81299962|ref|YP_400170.1| hypothetical protein Synpcc7942_1153 [Synechococcus elongatus PCC
           7942]
 gi|56685365|dbj|BAD78587.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168843|gb|ABB57183.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 614

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           + +++G + AGKSSL NAL + + AIV  +P T   + T D  L+ G  +++ D+ G  +
Sbjct: 281 RFLLIGRTGAGKSSLINALFQTETAIVDCLPSTP-AIQTYDWQLDNGDRLQLLDSPGYEQ 339

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
                  E +       + AD ++LL
Sbjct: 340 AGRFDLWESV---LTAADTADAVVLL 362


>gi|319778829|ref|YP_004129742.1| Integral membrane protein [Taylorella equigenitalis MCE9]
 gi|317108853|gb|ADU91599.1| Integral membrane protein [Taylorella equigenitalis MCE9]
          Length = 458

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           K+ ++GH+N GK+SL   L + K    V D PGTT+ +    + L+   + + DT G  +
Sbjct: 6   KLAVVGHTNTGKTSLLRTLLEDKSFGEVEDSPGTTKALEAAVIPLDDCEITLIDTPGFED 65

Query: 280 TDDI 283
           ++ +
Sbjct: 66  SEGL 69


>gi|317056006|ref|YP_004104473.1| ferrous iron transport protein B [Ruminococcus albus 7]
 gi|315448275|gb|ADU21839.1| ferrous iron transport protein B [Ruminococcus albus 7]
          Length = 804

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK-----ISDTA 275
           KI + G+ N GK++LFNAL   +   V + PG T +        EG L K     ++D  
Sbjct: 4   KIALAGNPNCGKTTLFNALTGSN-QFVGNWPGVTVE------KKEGKLKKHNDVIVTDLP 56

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303
           GI        +E + R +L  E+ D+IL
Sbjct: 57  GIYSLSPYTLEEVVARNYLIDEHPDVIL 84


>gi|301617385|ref|XP_002938122.1| PREDICTED: GTP-binding protein era homolog [Xenopus (Silurana)
           tropicalis]
          Length = 445

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 17/127 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRE 279
           +I I+G  NAGKS+L N L  + V  V+    TTR     +  + E  LV + DT G+  
Sbjct: 99  RIAIIGSPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQAQGVITEGETQLV-LLDTPGMVT 157

Query: 280 TDDI----VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP--------KNIDFIF 324
           T  +    +EK  +   +  +++ADL+L+L +++   ++  ++F         +NI  I 
Sbjct: 158 TSKVKRHNLEKSLLHDPWQSMKSADLVLVLLDVSDHWTRSSLNFEVLKCLSQFQNIPSIL 217

Query: 325 IGTKSDL 331
           +  K DL
Sbjct: 218 VLNKVDL 224


>gi|297617726|ref|YP_003702885.1| small GTP-binding protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145563|gb|ADI02320.1| small GTP-binding protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 595

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 37/184 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+V++G  N GKS++ + L   +V IV++  GT+ ++   ++ L    ++I DT GI  +
Sbjct: 2   KVVLVGQPNVGKSAILHRLTGAEV-IVSNYAGTSVELTRGNVRLGKKNIEIIDTPGIYSS 60

Query: 281 DDIVE-KEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--FIGTKSDLYSTYTE 337
              V  +E I +  L  E+ +L+     IN     S  +N+      +GT   L      
Sbjct: 61  LAAVSAEETITKELLSKESVNLV-----INVVDATSLARNLALTLELLGTAKPLL-VLLN 114

Query: 338 EYDHL----------------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           + D +                       S+ TGEG+ E+ + +   LS       F++P+
Sbjct: 115 QMDRVRSKGMVIRHAELARWLGVTVIPFSAVTGEGVAEVFDYLDRGLSEG-----FALPN 169

Query: 376 HKRH 379
            + H
Sbjct: 170 PEVH 173


>gi|296125765|ref|YP_003633017.1| ferrous iron transport protein B [Brachyspira murdochii DSM 12563]
 gi|296017581|gb|ADG70818.1| ferrous iron transport protein B [Brachyspira murdochii DSM 12563]
          Length = 829

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI + G+ N+GK+++FNAL   +   V + PG T +    ++   GY   + D  G+   
Sbjct: 120 KIALAGNPNSGKTTIFNALTGANYK-VANYPGVTVEKRQANMMYNGYTYDLIDLPGVYSL 178

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
               + E +    L  E  D I+
Sbjct: 179 SAYSQDEVVACDVLLNEKPDFII 201


>gi|222445170|ref|ZP_03607685.1| hypothetical protein METSMIALI_00791 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434735|gb|EEE41900.1| hypothetical protein METSMIALI_00791 [Methanobrevibacter smithii
           DSM 2375]
          Length = 336

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 26/160 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IVI G  N GKS+L N ++  D  I  + P TT+ +    ++     ++I DT G+ +  
Sbjct: 165 IVIAGFPNVGKSTLLNQISGADPQI-ANYPFTTKGIQIGHVERHWKSIQIIDTPGLLDR- 222

Query: 282 DIVEKEGIK-RTFLEVEN-ADLILLL------------KEINSKKEI-SFPKNIDFIFIG 326
            ++E   I+    + +E+ AD IL +             + N  K+I     NI  I++ 
Sbjct: 223 PVLEMNDIELNAIVALEHLADAILFIFDASETCGFGLESQYNLLKQIEKIFDNIPVIYLF 282

Query: 327 TKSDLY--STYTEEY-DHL-----ISSFTGEGLEELINKI 358
            K DL   ++Y E+Y D L     IS+  GEG+++ INK+
Sbjct: 283 NKMDLIEDTSYVEQYVDELDNSIFISAIEGEGIDK-INKV 321


>gi|148377409|ref|YP_001256285.1| GTPase EngB [Mycoplasma agalactiae PG2]
 gi|238686660|sp|A5IXT1|ENGB_MYCAP RecName: Full=Probable GTP-binding protein EngB
 gi|148291455|emb|CAL58840.1| GTP binding protein engB [Mycoplasma agalactiae PG2]
          Length = 194

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID------LDLEGY 267
           +I   G SN GKSSL NAL  + ++ V+  PG T+ +          +DL GY
Sbjct: 22  QICFWGRSNVGKSSLLNALVNQKISYVSKQPGRTQFINYFQEENRFIVDLPGY 74


>gi|109948148|ref|YP_665376.1| ribosome biogenesis GTP-binding protein YsxC [Helicobacter
           acinonychis str. Sheeba]
 gi|122973208|sp|Q17VE9|ENGB_HELAH RecName: Full=Probable GTP-binding protein EngB
 gi|109715369|emb|CAK00377.1| conserved hypothetical GTP-binding protein [Helicobacter
           acinonychis str. Sheeba]
          Length = 208

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +V+LG SN GKSS  N L  K++A  +  PG TR
Sbjct: 27  MVVLGRSNVGKSSFINTLLGKNLAKSSSTPGKTR 60


>gi|50365173|ref|YP_053598.1| GTPase EngB [Mesoplasma florum L1]
 gi|81827302|sp|Q6F1A9|ENGB_MESFL RecName: Full=Probable GTP-binding protein EngB
 gi|50363729|gb|AAT75714.1| GTP-binding protein, endoglucanase/xylanase [Mesoplasma florum L1]
          Length = 198

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 14/97 (14%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL---- 262
           +  K G I  N  ++  +G SN GKSS  N LA  K +A V + PG TR +   D+    
Sbjct: 11  AANKSGWIEDNIPEVCFVGRSNVGKSSFINTLANNKKLAKVANTPGKTRLLNFFDINNSS 70

Query: 263 ----DLEGY-LVKISDTA----GIRETDDIVEKEGIK 290
               D  GY   KIS++     GI   D +  +E +K
Sbjct: 71  FRLVDAPGYGYAKISNSMKVEFGIMMEDYLTTRENLK 107


>gi|82407888|pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
          Length = 196

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 31/154 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           K+ I G +  GKS+L      K      D  +  T R   TID ++    ++I DTAG  
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVS--MEILDTAG-- 85

Query: 279 ETDDIVEKEGIKRT---FLEVENA------DLILLLKEINSKKEISFPKNIDFIFIGTKS 329
             +D +++EG  R    F+ V +       + +L LK  N   EI  PKN+  I +G K+
Sbjct: 86  -QEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLK--NILDEIKKPKNVTLILVGNKA 142

Query: 330 DL---YSTYTEEYDHL----------ISSFTGEG 350
           DL       TEE + L           S+ TGEG
Sbjct: 143 DLDHSRQVSTEEGEKLATELACAFYECSACTGEG 176


>gi|50306157|ref|XP_453040.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|52783187|sp|Q6CSP9|NOG2_KLULA RecName: Full=Nucleolar GTP-binding protein 2
 gi|49642173|emb|CAH01891.1| KLLA0C18843p [Kluyveromyces lactis]
          Length = 513

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+   +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    +L+   D  G
Sbjct: 312 RHQISVGFIGYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLMKRIFLI---DCPG 368

Query: 277 I 277
           I
Sbjct: 369 I 369


>gi|332083170|gb|EGI88401.1| GTP-binding proten HflX [Shigella boydii 5216-82]
          Length = 426

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 27/202 (13%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +     QG+   I  +   + ++G++NAGKS+LFN + +  V     +  T    L  ID
Sbjct: 181 VEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRID 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILL------------LKE 307
           +   G  V ++DT G IR    D+V     K T  E   A L+L             ++ 
Sbjct: 241 VADVGETV-LADTVGFIRHLPHDLV--AAFKATLQETRQATLLLHVIDAADVRVQENIEA 297

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKI 358
           +N+  E      I  + +  K D+   +    D           +S+ TG G+ +L   +
Sbjct: 298 VNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIPQLFQAL 357

Query: 359 KSILSNKFKKLPFSIPSHKRHL 380
              LS++  +    +P  +  L
Sbjct: 358 TERLSDEVAQHTLRLPPQEGRL 379


>gi|331685373|ref|ZP_08385959.1| conserved hypothetical protein [Escherichia coli H299]
 gi|331077744|gb|EGI48956.1| conserved hypothetical protein [Escherichia coli H299]
          Length = 294

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHGVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            + G TR    + L      + + D  GI ET  
Sbjct: 68  PLNGCTRQAHRLTLQFGERRMTLVDLPGIGETPQ 101


>gi|282851350|ref|ZP_06260715.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
 gi|282557318|gb|EFB62915.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
          Length = 213

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 222 IVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I  +G +N GKS+L NA+       KDV   +  PGTT D + I L    YL+   DT G
Sbjct: 13  IYFVGTTNVGKSTLINAIINMNSDLKDVITTSKFPGTTLDEIKIPLSNGHYLI---DTPG 69

Query: 277 IRETDDIV 284
           I   + + 
Sbjct: 70  ILNANQLA 77


>gi|260459484|ref|ZP_05807739.1| GTP-binding proten HflX [Mesorhizobium opportunistum WSM2075]
 gi|259035038|gb|EEW36294.1| GTP-binding proten HflX [Mesorhizobium opportunistum WSM2075]
          Length = 468

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 38/187 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + I+G++NAGKS+LFN L   DV +  D+   T D     + L  G  + +SDT G    
Sbjct: 233 VAIVGYTNAGKSTLFNRLTGADV-LAQDMLFATLDPTLRRVRLPHGTPIILSDTVGF--I 289

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEI------------------------NSKKEI 314
            D+        + T  EV  ADL++ L++I                        ++K+ I
Sbjct: 290 SDLPTHLIAAFRATLEEVVEADLVIHLRDISDPDTAAQAEDVERILADLGVDAGDAKRVI 349

Query: 315 SFPKNIDFIFIGTKSDLY--------STYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                ID +  G +S L         +  ++     +S+ TGEG++ L   I++ ++ + 
Sbjct: 350 EVWNKIDQLDEGNRSRLLAPDMAKGGAAGSKGPPIAVSAVTGEGIDALKAIIETRMAGEL 409

Query: 367 KKLPFSI 373
           + L  +I
Sbjct: 410 EDLTVTI 416


>gi|257058186|ref|YP_003136074.1| GTP-binding proten HflX [Cyanothece sp. PCC 8802]
 gi|256588352|gb|ACU99238.1| GTP-binding proten HflX [Cyanothece sp. PCC 8802]
          Length = 564

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI-----PGTTR 255
           N + +H S+ +     +    + I+G++NAGKS+L NAL K DV     +     P T R
Sbjct: 376 NQLQAHRSRLRHQRQQQEVPSVAIVGYTNAGKSTLINALTKADVYTADQLFATLDPTTRR 435

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
             +      E   + ++DT G          +  + T  EV  AD +L
Sbjct: 436 LQVVEPTTGESTTLLLTDTVGFIHELPPSLVDAFRATLEEVTEADALL 483


>gi|219684137|ref|ZP_03539081.1| GTP-binding protein [Borrelia garinii PBr]
 gi|219672126|gb|EED29179.1| GTP-binding protein [Borrelia garinii PBr]
          Length = 279

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKSS+ N L+ K  A V + PG T+++  + ++ E   + + D  GI   
Sbjct: 119 KVLIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKINEE---INLFDMPGILWH 175

Query: 281 DDIVEKEGIKRTFLE------VENADLILLLKEI 308
           +   +    K   L+      V+N DL L L EI
Sbjct: 176 NLADQSIAKKLAILDMIKNEIVDNIDLALYLLEI 209


>gi|218245160|ref|YP_002370531.1| GTP-binding proten HflX [Cyanothece sp. PCC 8801]
 gi|218165638|gb|ACK64375.1| GTP-binding proten HflX [Cyanothece sp. PCC 8801]
          Length = 564

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI-----PGTTR 255
           N + +H S+ +     +    + I+G++NAGKS+L NAL K DV     +     P T R
Sbjct: 376 NQLQAHRSRLRHQRQQQEVPSVAIVGYTNAGKSTLINALTKADVYTADQLFATLDPTTRR 435

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
             +      E   + ++DT G          +  + T  EV  AD +L
Sbjct: 436 LQVVEPTTGESTTLLLTDTVGFIHELPPSLVDAFRATLEEVTEADALL 483


>gi|163860137|gb|ABY41232.1| putative GTP-binding protein [Pseudomonas fluorescens]
          Length = 146

 Score = 37.4 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           G+++   G SNAGKSS  N L    +A  +  PG T+ +    LD E  LV +
Sbjct: 31  GFEVAFAGRSNAGKSSALNTLTHASLARTSKTPGRTQLLNFFKLDDERRLVDL 83


>gi|149181953|ref|ZP_01860441.1| GTP-binding protein (hflX) [Bacillus sp. SG-1]
 gi|148850392|gb|EDL64554.1| GTP-binding protein (hflX) [Bacillus sp. SG-1]
          Length = 359

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN ++  +      +  T  D LT  L L  GY   ++DT G  
Sbjct: 140 FQLALMGYTNAGKSTLFNRISIAESYEENQLFATL-DPLTRKLILPSGYSALVTDTVGFI 198

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  EV+ ADL+L
Sbjct: 199 QDLPTALVAAFRSTLEEVKEADLLL 223


>gi|14249704|ref|NP_116307.1| ras-related and estrogen-regulated growth inhibitor isoform 1 [Homo
           sapiens]
 gi|109095804|ref|XP_001091590.1| PREDICTED: ras-related and estrogen-regulated growth inhibitor
           isoform 4 [Macaca mulatta]
 gi|297691304|ref|XP_002823030.1| PREDICTED: ras-related and estrogen-regulated growth inhibitor-like
           [Pongo abelii]
 gi|74731090|sp|Q96A58|RERG_HUMAN RecName: Full=Ras-related and estrogen-regulated growth inhibitor
 gi|15430701|gb|AAK98530.1|AF339750_1 ras-related estrogen-regulated growth inhibiting protein [Homo
           sapiens]
 gi|14124946|gb|AAH07997.1| RAS-like, estrogen-regulated, growth inhibitor [Homo sapiens]
 gi|60656407|gb|AAX32767.1| RAS-like estrogen-regulated growth inhibitor [synthetic construct]
 gi|119616751|gb|EAW96345.1| RAS-like, estrogen-regulated, growth inhibitor, isoform CRA_a [Homo
           sapiens]
 gi|119616752|gb|EAW96346.1| RAS-like, estrogen-regulated, growth inhibitor, isoform CRA_a [Homo
           sapiens]
 gi|123993033|gb|ABM84118.1| RAS-like, estrogen-regulated, growth inhibitor [synthetic
           construct]
 gi|189067014|dbj|BAG36607.1| unnamed protein product [Homo sapiens]
 gi|312150232|gb|ADQ31628.1| RAS-like, estrogen-regulated, growth inhibitor [synthetic
           construct]
          Length = 199

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 31/154 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           K+ I G +  GKS+L      K      D  +  T R   TID ++    ++I DTAG  
Sbjct: 8   KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVS--MEILDTAG-- 63

Query: 279 ETDDIVEKEGIKRT---FLEVENA------DLILLLKEINSKKEISFPKNIDFIFIGTKS 329
             +D +++EG  R    F+ V +       + +L LK I    EI  PKN+  I +G K+
Sbjct: 64  -QEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILD--EIKKPKNVTLILVGNKA 120

Query: 330 DL---YSTYTEEYDHL----------ISSFTGEG 350
           DL       TEE + L           S+ TGEG
Sbjct: 121 DLDHSRQVSTEEGEKLATELACAFYECSACTGEG 154


>gi|329888536|ref|ZP_08267134.1| ribosome biogenesis GTP-binding protein YsxC [Brevundimonas
           diminuta ATCC 11568]
 gi|328847092|gb|EGF96654.1| ribosome biogenesis GTP-binding protein YsxC [Brevundimonas
           diminuta ATCC 11568]
          Length = 222

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 3/123 (2%)

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI-IRNGYKIVILGHSNAGKSS 234
           +D S+E  V  +S  E+    +      S  +   K+ ++   +  +I   G SN GKSS
Sbjct: 1   MDASDEPKVGEYSDAEIEAARVLFARQASFVLGCAKIEQLPTPDLPEIAFAGRSNVGKSS 60

Query: 235 LFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK-EGIKRT 292
           L N L     +A  ++ PG TR+V   DLD    LV +      + +   V+K + + R 
Sbjct: 61  LINGLVGMHKLARASNEPGRTREVNFFDLDGRMRLVDLPGYGWAKASKTTVKKFQDLGRD 120

Query: 293 FLE 295
           +L 
Sbjct: 121 YLR 123


>gi|315925210|ref|ZP_07921424.1| GTP-binding protein Era [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621444|gb|EFV01411.1| GTP-binding protein Era [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 307

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 27/173 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           I ++G  N GKS+L NA+  + + I +  P TTR+ +  I  D +  +V + DT G+ + 
Sbjct: 16  IALIGRPNVGKSTLLNAILGEKMVITSARPQTTRNSIRCIHTDADCQMVFV-DTPGVHKP 74

Query: 281 DDIVEKEGIKRTFLE-VENADLILLLKEINSKK------------EISFP-----KNIDF 322
              +  E +K+T  + + + D +L L E   K+             +  P       ID 
Sbjct: 75  KTKL-GEYMKKTIRDTLADVDAVLYLVEPTKKERPEDAYIRKLLARVQAPVVLVINKIDT 133

Query: 323 IFIGTKSDLYSTYTEEYDHL-----ISSFTGEGLEELINKIKSILSNKFKKLP 370
           +      D+ + Y  E D L     +S+  GEG+ E++  + ++L    +  P
Sbjct: 134 VGKPALLDVMARYRGE-DRLRTIVPVSAKRGEGIGEVMAALMAVLPEGPQYFP 185


>gi|294508447|ref|YP_003572505.1| GTP-binding protein hflX [Salinibacter ruber M8]
 gi|294344775|emb|CBH25553.1| GTP-binding protein hflX [Salinibacter ruber M8]
          Length = 455

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 9/65 (13%)

Query: 217 RNGYKIV-ILGHSNAGKSSLFNALAKKDVA----IVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R GY    ++G++NAGKS+L NALA +D+     +   +  TTR   T++LD     V +
Sbjct: 198 REGYTTASLVGYTNAGKSTLLNALADEDLEAEDRLFATLDATTR---TVELD-SNKEVLM 253

Query: 272 SDTAG 276
           SDT G
Sbjct: 254 SDTVG 258


>gi|302877399|ref|YP_003845963.1| ribosome biogenesis GTP-binding protein YsxC [Gallionella
           capsiferriformans ES-2]
 gi|302580188|gb|ADL54199.1| ribosome biogenesis GTP-binding protein YsxC [Gallionella
           capsiferriformans ES-2]
          Length = 208

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +  G ++  +G SNAGKSS  N LA    +A  +  PG T+ +    L  +GY+V +
Sbjct: 21  MHGGREVAFVGRSNAGKSSAINTLANHVRLAYTSKTPGRTQHLNYFSLGNDGYIVDL 77


>gi|255692691|ref|ZP_05416366.1| ferrous iron transport protein B [Bacteroides finegoldii DSM 17565]
 gi|260621577|gb|EEX44448.1| ferrous iron transport protein B [Bacteroides finegoldii DSM 17565]
          Length = 828

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N+GK+SLFN LA      V +  G T D      D EGY  +I D  G
Sbjct: 109 RRTINVALVGNPNSGKTSLFN-LASGAHEHVGNYSGVTVDAKEGYFDFEGYHFRIVDLPG 167

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
                    +E   R  +  E  D+I+
Sbjct: 168 TYSLSAYTPEEIYVRRHIIDETPDVII 194


>gi|193631901|ref|XP_001950148.1| PREDICTED: guanine nucleotide-binding protein-like 3 homolog
           [Acyrthosiphon pisum]
          Length = 499

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           ++G  N GKSSL N+L +     V  +PG T+++  I LD     +K+ D  G+
Sbjct: 222 VVGMPNVGKSSLINSLKRSRACQVGAVPGVTKNMQEIQLDKH---IKLLDCPGV 272


>gi|148642929|ref|YP_001273442.1| GTP1/OBG family GTPase [Methanobrevibacter smithii ATCC 35061]
 gi|148551946|gb|ABQ87074.1| GTPase, GTP1/OBG family [Methanobrevibacter smithii ATCC 35061]
          Length = 336

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 26/160 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IVI G  N GKS+L N ++  D  I  + P TT+ +    ++     ++I DT G+ +  
Sbjct: 165 IVIAGFPNVGKSTLLNQISGADPQI-ANYPFTTKGIQIGHVERHWKSIQIIDTPGLLDR- 222

Query: 282 DIVEKEGIK-RTFLEVEN-ADLILLL------------KEINSKKEI-SFPKNIDFIFIG 326
            ++E   I+    + +E+ AD IL +             + N  K+I     NI  I++ 
Sbjct: 223 PVLEMNDIELNAIVALEHLADAILFIFDASETCGFGLESQYNLLKQIEKIFDNIPVIYLF 282

Query: 327 TKSDLY--STYTEEY-DHL-----ISSFTGEGLEELINKI 358
            K DL   ++Y E+Y D L     IS+  GEG+++ INK+
Sbjct: 283 NKMDLIEDTSYVEQYVDELDNSIFISAIEGEGIDK-INKV 321


>gi|153006942|ref|YP_001381267.1| ferrous iron transport protein B [Anaeromyxobacter sp. Fw109-5]
 gi|152030515|gb|ABS28283.1| ferrous iron transport protein B [Anaeromyxobacter sp. Fw109-5]
          Length = 738

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G+ N+GKS+L NA+A   +  V + PG T +     L+  G  +++ D  G     
Sbjct: 23  VAVAGNPNSGKSTLINAIAGSRLH-VGNWPGVTVEKKEASLEHGGRRIRLVDLPGTYSLS 81

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
              ++E + R +L  E  D+I+
Sbjct: 82  PYSQEEIVARDYLAHERPDVIV 103


>gi|161830086|ref|YP_001596717.1| GTP-binding proten HflX [Coxiella burnetii RSA 331]
 gi|215919083|ref|NP_820006.2| GTP-binding proten HflX [Coxiella burnetii RSA 493]
 gi|161761953|gb|ABX77595.1| GTP-binding proten HflX [Coxiella burnetii RSA 331]
 gi|206583968|gb|AAO90520.2| GTP-binding protein [Coxiella burnetii RSA 493]
          Length = 454

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 25/166 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE- 279
           + ++G++NAGKS+LFNA+ + +V     +  T       ++L   G ++ +     IR+ 
Sbjct: 206 VSLVGYTNAGKSTLFNAITEANVYTADQLFATLDPTFRQLELPTLGKIILVDTVGFIRDL 265

Query: 280 TDDIVEKEGIKRTFLEVENADLIL------------LLKEINSKKEISFPKNIDFIFIGT 327
             D++     + T  E   ADL+L            +L+E+    E    + +  +FI  
Sbjct: 266 PHDLI--AAFRATLEESRQADLLLHVVDAHSPDSSVMLEEVQKVLETIGAEEVPQLFIYN 323

Query: 328 KSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSN 364
           K DL  +     D+          +S+ TG G++ L   I  +L +
Sbjct: 324 KIDLLESRKPRIDYDEKGKPRRVWLSALTGVGIDLLNPAIVELLGD 369


>gi|24375273|ref|NP_719316.1| cysteine/glutathione ABC transporter membrane/ATP-binding component
           [Shewanella oneidensis MR-1]
 gi|24350075|gb|AAN56760.1|AE015811_8 ABC transporter, ATP-binding protein CydC [Shewanella oneidensis
           MR-1]
          Length = 583

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILF--LKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           E+D+ FS + D++  S    ++DI F  L+N    H+ QG L   I+ G K+ +LG +  
Sbjct: 323 ESDIRFSTDTDLKAISGGLQIHDIHFGYLENQ---HVLQG-LSLEIKPGQKVALLGSTGC 378

Query: 231 GKSSLFNALAK 241
           GKSSL + + +
Sbjct: 379 GKSSLLSLITR 389


>gi|327400921|ref|YP_004341760.1| GTP-binding protein HSR1-like protein [Archaeoglobus veneficus
           SNP6]
 gi|327316429|gb|AEA47045.1| GTP-binding protein HSR1-related protein [Archaeoglobus veneficus
           SNP6]
          Length = 197

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT--------RDVLTIDLDLEGYL 268
           R  ++I+ +G SN GKS+LF+AL  K V      PGTT        RD+L  DL   GY+
Sbjct: 5   RVKHEIIFVGRSNVGKSTLFSALFGKKVRKGKK-PGTTIKPNFLQYRDLLITDLPGYGYI 63

Query: 269 VKISDTAGIRETDDIV 284
             ++     R  D IV
Sbjct: 64  RGVNRDFNERVKDFIV 79


>gi|326560804|gb|EGE11171.1| HSR1-related GTP-binding protein [Moraxella catarrhalis 103P14B1]
 gi|326574435|gb|EGE24377.1| HSR1-related GTP-binding protein [Moraxella catarrhalis 101P30B1]
 gi|326575972|gb|EGE25895.1| HSR1-related GTP-binding protein [Moraxella catarrhalis CO72]
          Length = 466

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGY--LVKIS 272
           I+N   I I+GH+N GK+SL   L +  D   V +   TTR V+ +D+  +    L+ + 
Sbjct: 7   IKNLTTISIIGHTNVGKTSLLRTLLRDSDFGEVKNASATTRHVVAVDILSKDNVPLITLH 66

Query: 273 DTAGIRETDDIVE 285
           DT G+ +   +++
Sbjct: 67  DTPGLEDATGVMD 79


>gi|313884146|ref|ZP_07817912.1| ribosome biogenesis GTP-binding protein YsxC [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620593|gb|EFR32016.1| ribosome biogenesis GTP-binding protein YsxC [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 198

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 27/172 (15%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ + G SN GKSS  N+L A+K++A  +  PG T+ +    ++     V +      R 
Sbjct: 25  EVALAGRSNVGKSSFINSLIARKNLARTSSQPGKTQTLNFYAINQAFRFVDVPGYGYARV 84

Query: 280 TDD--IVEKEGIKRTFLEVENADLILLLKEINSK-----KEIS-FPKNID--FIFIGTKS 329
           + D  +   + I++   + EN +L+ LL ++  +     +E+  F +N+D  +  + TK+
Sbjct: 85  SKDFRLAWSKMIEKYLSQRENMELLFLLMDMRHEPTRLDREMKDFAENLDLPYAIVLTKA 144

Query: 330 D------------LYSTYTE--EYDHLI--SSFTGEGLEELINKIKSILSNK 365
           D            +Y    E    D L   S+  G G EE+ + I S+L  K
Sbjct: 145 DKIKPASWNKHLSMYKKALELPSVDALFPYSATKGYGKEEIWDVISSVLQLK 196


>gi|257458774|ref|ZP_05623897.1| ribosome biogenesis GTP-binding protein YsxC [Campylobacter
           gracilis RM3268]
 gi|257443762|gb|EEV18882.1| ribosome biogenesis GTP-binding protein YsxC [Campylobacter
           gracilis RM3268]
          Length = 299

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++  LG SN GKSSL NAL  +K++A  +  PG T+ +   ++  +  L   SD +  + 
Sbjct: 26  EVAFLGRSNVGKSSLINALTGRKNLAKSSSTPGKTQLINFFEVKFKQKLAADSDDSQAKM 85

Query: 280 TDDIVEKEGI 289
             D+  K  +
Sbjct: 86  PPDLASKGAL 95


>gi|255282513|ref|ZP_05347068.1| GTP-binding protein Era [Bryantella formatexigens DSM 14469]
 gi|255266806|gb|EET60011.1| GTP-binding protein Era [Bryantella formatexigens DSM 14469]
          Length = 310

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 34/175 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI +  P TTR+ +      +   +   DT GI    
Sbjct: 19  VTLIGRPNVGKSTLMNHLIGQKIAITSRKPQTTRNRIQTVYTCDRGQIVFLDTPGIHRAK 78

Query: 282 DIVEKEGI---KRTFLEVENADLILLLKE------------INSKKEISFP-----KNID 321
           + + +  +   +RT  EV   D+IL L E            +   K++  P       ID
Sbjct: 79  NKLGEYMVNVAERTLSEV---DVILWLVEPTTFIGAGEQHIVQQLKKVKQPVVLIINKID 135

Query: 322 FIFIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            +     +     Y + Y+       S+  G+ L+E+I+ I       FK LP+ 
Sbjct: 136 TVQKTEVAKFIDAYRKIYNFADIIAASALRGQNLQEIIDVI-------FKYLPYG 183


>gi|195451637|ref|XP_002073011.1| GK13906 [Drosophila willistoni]
 gi|194169096|gb|EDW83997.1| GK13906 [Drosophila willistoni]
          Length = 579

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L +    +V   PG T+ +  ++LD +   +K+ D  
Sbjct: 265 IKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKAMQEVELDSK---IKLIDCP 321

Query: 276 GI 277
           GI
Sbjct: 322 GI 323


>gi|307825475|ref|ZP_07655693.1| ferrous iron transport protein B [Methylobacter tundripaludum SV96]
 gi|307733361|gb|EFO04220.1| ferrous iron transport protein B [Methylobacter tundripaludum SV96]
          Length = 781

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 9/94 (9%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           ++  + + ++G+ N GK++LFNAL  A++ V    + PG T +  T     +  L+++ D
Sbjct: 1   MKTDFTVGVVGNPNCGKTTLFNALTGARQHVG---NWPGVTVEKKTGAYSFDHKLIELVD 57

Query: 274 TAG---IRETDDIVE-KEGIKRTFLEVENADLIL 303
             G   +   DD V   E + R ++  + ADLI+
Sbjct: 58  LPGTYSLEAADDQVSLDEKVARDYVASKQADLII 91


>gi|312110147|ref|YP_003988463.1| ribosome biogenesis GTPase YqeH [Geobacillus sp. Y4.1MC1]
 gi|311215248|gb|ADP73852.1| ribosome biogenesis GTPase YqeH [Geobacillus sp. Y4.1MC1]
          Length = 367

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 15/100 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+  N +      K +V   +  PGTT D++ I LD        
Sbjct: 158 RLGKNVYVVGCTNVGKSTFINRIIQETTGKGNVITTSYFPGTTLDIIEIPLD-------- 209

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            D A + +T  I+    +   F++ ++  +I   +EI+ K
Sbjct: 210 -DGAALYDTPGIINHHQMAH-FVDKKDLKIITPKREIHPK 247


>gi|255711019|ref|XP_002551793.1| KLTH0A07678p [Lachancea thermotolerans]
 gi|238933170|emb|CAR21351.1| KLTH0A07678p [Lachancea thermotolerans]
          Length = 502

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L  + +L+   D  G
Sbjct: 313 RKQISVGFIGYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLMKKIFLI---DCPG 369

Query: 277 I 277
           I
Sbjct: 370 I 370


>gi|237712942|ref|ZP_04543423.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409615|ref|ZP_06086155.1| ferrous iron transporter B [Bacteroides sp. 2_1_22]
 gi|294643472|ref|ZP_06721285.1| ferrous iron transport protein B [Bacteroides ovatus SD CC 2a]
 gi|294807916|ref|ZP_06766697.1| ferrous iron transport protein B [Bacteroides xylanisolvens SD CC
           1b]
 gi|229447061|gb|EEO52852.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352468|gb|EEZ01568.1| ferrous iron transporter B [Bacteroides sp. 2_1_22]
 gi|292641191|gb|EFF59396.1| ferrous iron transport protein B [Bacteroides ovatus SD CC 2a]
 gi|294444914|gb|EFG13600.1| ferrous iron transport protein B [Bacteroides xylanisolvens SD CC
           1b]
          Length = 828

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N+GK+SLFN LA      V +  G T D      D EGY  +I D  G
Sbjct: 109 RRTINVALVGNPNSGKTSLFN-LASGAHEHVGNYSGVTVDAKEGYFDFEGYHFRIVDLPG 167

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
                    +E   R  +  E  D+I+
Sbjct: 168 TYSLSAYTPEEIYVRRHIIDETPDVII 194


>gi|119369233|sp|Q4KKJ8|ENGB_PSEF5 RecName: Full=Probable GTP-binding protein EngB
          Length = 213

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ N IL L    +  +S  K+ +   + G+++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QLKNPILGLCQQATFMLSAAKVDQCPDDEGFEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTR--DVLTID-----LDLEGY 267
            PG T+  +   +D     +DL GY
Sbjct: 62  TPGRTQLLNFFKLDDDRRLVDLPGY 86


>gi|14590535|ref|NP_142603.1| GTP-binding protein [Pyrococcus horikoshii OT3]
 gi|3257053|dbj|BAA29736.1| 355aa long hypothetical GTP-binding protein [Pyrococcus horikoshii
           OT3]
          Length = 355

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GKS++ N L  K       IPG T+    I L  + +L+   DT G+   
Sbjct: 105 KVALIGYPNVGKSTIINVLKGKHSVGTAPIPGYTKGKQMIRLTKKIWLL---DTPGVVPI 161

Query: 281 DD 282
           DD
Sbjct: 162 DD 163


>gi|332678448|gb|AEE87577.1| GTP-binding protein Era [Francisella cf. novicida Fx1]
          Length = 297

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           GY I I+G  N GKS+L N + K  V+I +  P TTR  +T    L G      DT GI
Sbjct: 5   GY-ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGGTQFIYVDTPGI 62


>gi|326559848|gb|EGE10248.1| HSR1-related GTP-binding protein [Moraxella catarrhalis 7169]
          Length = 466

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGY--LVKIS 272
           I+N   I I+GH+N GK+SL   L +  D   V +   TTR V+ +D+  +    L+ + 
Sbjct: 7   IKNLTTISIIGHTNVGKTSLLRTLLRDSDFGEVKNASATTRHVVAVDILSKDNVPLITLH 66

Query: 273 DTAGIRETDDIVE 285
           DT G+ +   +++
Sbjct: 67  DTPGLEDATGVMD 79


>gi|309810198|ref|ZP_07704043.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners SPIN
           2503V10-D]
 gi|312872993|ref|ZP_07733053.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners LEAF 2062A-h1]
 gi|312874210|ref|ZP_07734244.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners LEAF 2052A-d]
 gi|312875587|ref|ZP_07735588.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners LEAF 2053A-b]
 gi|325912587|ref|ZP_08174970.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners UPII 60-B]
 gi|308169470|gb|EFO71518.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners SPIN
           2503V10-D]
 gi|311088841|gb|EFQ47284.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners LEAF 2053A-b]
 gi|311090280|gb|EFQ48690.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners LEAF 2052A-d]
 gi|311091515|gb|EFQ49899.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners LEAF 2062A-h1]
 gi|325478008|gb|EGC81137.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners UPII 60-B]
          Length = 370

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 15/111 (13%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKND-ISSHISQGKLGEIIR------NGYKIVILGHSNAG 231
           S+E  ++++  +E   + LF K   + S I +  + E+I           I  +G +N G
Sbjct: 120 SKESKIKDWMRQEANRNGLFPKKIFLLSAIKKRNIDELINYLATKGKNEDIYFVGTTNVG 179

Query: 232 KSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           KS+L NA+ +     K++   +  PGTT D + I L+   YLV   DT GI
Sbjct: 180 KSTLINAIIETRSEYKNLITTSKFPGTTLDSIKIPLNEGHYLV---DTPGI 227


>gi|302537342|ref|ZP_07289684.1| GTP-binding protein HflX [Streptomyces sp. C]
 gi|302446237|gb|EFL18053.1| GTP-binding protein HflX [Streptomyces sp. C]
          Length = 501

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 21/173 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I G++NAGKSSL N L    V +   +  T    +       G +  ++DT G +R  
Sbjct: 282 VAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRAETPSGRVYTLADTVGFVRHL 341

Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI---SFPKNIDFIFIGTK 328
              +  E  + T  EV ++DLIL +         +++ + +E+       N+  I +  K
Sbjct: 342 PHHL-VEAFRSTMEEVGDSDLILHIVDGSHPAPEEQLAAVREVIREVGAVNVPEIVVINK 400

Query: 329 SDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +D             E++   +S+ TG+G+EEL+  I + L     ++   +P
Sbjct: 401 ADAADPLVLQRLLRIEKHSIAVSARTGQGIEELLALIDTELPRPAVEVEALVP 453


>gi|237723185|ref|ZP_04553666.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298484346|ref|ZP_07002507.1| ferrous iron transport protein B [Bacteroides sp. D22]
 gi|229447707|gb|EEO53498.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|295087950|emb|CBK69473.1| ferrous iron transporter FeoB [Bacteroides xylanisolvens XB1A]
 gi|298269500|gb|EFI11100.1| ferrous iron transport protein B [Bacteroides sp. D22]
          Length = 828

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N+GK+SLFN LA      V +  G T D      D EGY  +I D  G
Sbjct: 109 RRTINVALVGNPNSGKTSLFN-LASGAHEHVGNYSGVTVDAKEGYFDFEGYHFRIVDLPG 167

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
                    +E   R  +  E  D+I+
Sbjct: 168 TYSLSAYTPEEIYVRRHIIDETPDVII 194


>gi|229166910|ref|ZP_04294657.1| GTPase [Bacillus cereus AH621]
 gi|228616538|gb|EEK73616.1| GTPase [Bacillus cereus AH621]
          Length = 349

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI-------PGTTRDVLTIDLDL 264
           L + +  G  I ++G S AGKS+L NAL   DVA   DI         TT       L  
Sbjct: 186 LQQFVSPGKTIALVGSSGAGKSTLLNALIGTDVAKTGDIREEDSKGRHTTTHRELFQLPS 245

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            G ++   DT G+RE         I+ TF ++E+
Sbjct: 246 GGLVI---DTPGMRELQLWEGSTAIQTTFSDIED 276


>gi|161898745|ref|YP_073086.2| ribosomal biogenesis GTPase [Borrelia garinii PBi]
          Length = 279

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKSS+ N L+ K  A V + PG T+++  + ++ E   + + D  GI   
Sbjct: 119 KVLIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKINEE---INLFDMPGILWH 175

Query: 281 DDIVEKEGIKRTFLE------VENADLILLLKEI 308
           +   +    K   L+      V+N DL L L EI
Sbjct: 176 NLADQSIAKKLAILDMIKNEIVDNIDLALYLLEI 209


>gi|145548595|ref|XP_001459978.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427805|emb|CAK92581.1| unnamed protein product [Paramecium tetraurelia]
          Length = 183

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 31/163 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +KI ++GHS +GKSS+  AL  K  A    IP T +         +    KI DT+G+  
Sbjct: 4   FKICLVGHSASGKSSILAALQNK--AFNPYIPQTIQSNCW-KYTHQNRSFKIYDTSGL-- 58

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI-----------SFPKNIDFIFIGTK 328
             D  +K  I      ++N++LI++  + +SK+             ++      +FIGTK
Sbjct: 59  --DKFQKSTIN----CLKNSNLIIICFDSSSKRAQIHVEQWLNIVRTYKSVTPIVFIGTK 112

Query: 329 SDLYSTYTEEYD---------HLISSFTGEGLEELINKIKSIL 362
           +D       EY          +L S+   +G++++   I+  L
Sbjct: 113 TDKALKQQNEYMQRLRERYPFYLTSASNPQGVKDVFRNIEQNL 155


>gi|70733595|ref|YP_257235.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas
           fluorescens Pf-5]
 gi|68347894|gb|AAY95500.1| GTP-binding protein EngB [Pseudomonas fluorescens Pf-5]
          Length = 268

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ N IL L    +  +S  K+ +   + G+++   G SNAGKSS  N L    +A  + 
Sbjct: 57  QLKNPILGLCQQATFMLSAAKVDQCPDDEGFEVAFAGRSNAGKSSALNTLTHASLARTSK 116

Query: 250 IPGTTR--DVLTID-----LDLEGY 267
            PG T+  +   +D     +DL GY
Sbjct: 117 TPGRTQLLNFFKLDDDRRLVDLPGY 141


>gi|34580908|ref|ZP_00142388.1| hypothetical GTP-binding protein [Rickettsia sibirica 246]
 gi|28262293|gb|EAA25797.1| hypothetical GTP-binding protein [Rickettsia sibirica 246]
          Length = 212

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 8/54 (14%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL-------DLEGY 267
           I  +G SN GKSSL N +   K++A V++ PG TR +   +L       DL GY
Sbjct: 42  IAFVGKSNVGKSSLINTICNNKNLAKVSNTPGRTRQINFFNLADKLIIVDLPGY 95


>gi|328946461|gb|EGG40601.1| GTP-binding protein HflX [Streptococcus sanguinis SK1087]
          Length = 412

 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T +++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKSQYEADELFATL-DATTKNINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLV 282


>gi|302869290|ref|YP_003837927.1| GTP-binding protein Era [Micromonospora aurantiaca ATCC 27029]
 gi|315504235|ref|YP_004083122.1| gtp-binding protein era [Micromonospora sp. L5]
 gi|302572149|gb|ADL48351.1| GTP-binding protein Era [Micromonospora aurantiaca ATCC 27029]
 gi|315410854|gb|ADU08971.1| GTP-binding protein Era [Micromonospora sp. L5]
          Length = 298

 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   + G  NAGKS+L NA+    +AI ++ P TTR ++   L      + + DT G
Sbjct: 10  RAGFACFV-GRPNAGKSTLTNAIVGTKIAITSNKPQTTRHIIRAVLHRPDSQLVLVDTPG 68

Query: 277 I 277
           +
Sbjct: 69  L 69


>gi|83814057|ref|YP_446511.1| GTPase [Salinibacter ruber DSM 13855]
 gi|83755451|gb|ABC43564.1| GTPase of unknown function subfamily, putative [Salinibacter ruber
           DSM 13855]
          Length = 427

 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 9/65 (13%)

Query: 217 RNGYKIV-ILGHSNAGKSSLFNALAKKDVA----IVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R GY    ++G++NAGKS+L NALA +D+     +   +  TTR   T++LD     V +
Sbjct: 170 REGYTTASLVGYTNAGKSTLLNALADEDLEAEDRLFATLDATTR---TVELD-SNKEVLM 225

Query: 272 SDTAG 276
           SDT G
Sbjct: 226 SDTVG 230


>gi|27904864|ref|NP_777990.1| putative GTP-binding protein EngB [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|27904262|gb|AAO27095.1| putative GTP-binding protein EngB [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 236

 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 219 GYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR 255
           G ++  +G+SN+GKSS+ NAL  +K +A ++  PG TR
Sbjct: 57  GLEVAFVGYSNSGKSSIINALTNQKKLAKISRTPGRTR 94


>gi|15841876|ref|NP_336913.1| GTP-binding protein Era [Mycobacterium tuberculosis CDC1551]
 gi|31793541|ref|NP_856034.1| GTP-binding protein Era [Mycobacterium bovis AF2122/97]
 gi|57116977|ref|YP_177873.1| GTP-binding protein Era [Mycobacterium tuberculosis H37Rv]
 gi|121638243|ref|YP_978467.1| GTP-binding protein Era [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662196|ref|YP_001283719.1| GTP-binding protein Era [Mycobacterium tuberculosis H37Ra]
 gi|148823567|ref|YP_001288321.1| GTP-binding protein Era [Mycobacterium tuberculosis F11]
 gi|167968758|ref|ZP_02551035.1| GTP-binding protein Era [Mycobacterium tuberculosis H37Ra]
 gi|215404290|ref|ZP_03416471.1| GTP-binding protein Era [Mycobacterium tuberculosis 02_1987]
 gi|215412110|ref|ZP_03420874.1| GTP-binding protein Era [Mycobacterium tuberculosis 94_M4241A]
 gi|215427740|ref|ZP_03425659.1| GTP-binding protein Era [Mycobacterium tuberculosis T92]
 gi|215431304|ref|ZP_03429223.1| GTP-binding protein Era [Mycobacterium tuberculosis EAS054]
 gi|215446608|ref|ZP_03433360.1| GTP-binding protein Era [Mycobacterium tuberculosis T85]
 gi|218754092|ref|ZP_03532888.1| GTP-binding protein Era [Mycobacterium tuberculosis GM 1503]
 gi|219558355|ref|ZP_03537431.1| GTP-binding protein Era [Mycobacterium tuberculosis T17]
 gi|224990737|ref|YP_002645424.1| GTP-binding protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798558|ref|YP_003031559.1| GTP-binding protein era [Mycobacterium tuberculosis KZN 1435]
 gi|254365141|ref|ZP_04981187.1| GTP-binding protein era [Mycobacterium tuberculosis str. Haarlem]
 gi|254551411|ref|ZP_05141858.1| GTP-binding protein Era [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260187367|ref|ZP_05764841.1| GTP-binding protein Era [Mycobacterium tuberculosis CPHL_A]
 gi|260201488|ref|ZP_05768979.1| GTP-binding protein Era [Mycobacterium tuberculosis T46]
 gi|260205665|ref|ZP_05773156.1| GTP-binding protein Era [Mycobacterium tuberculosis K85]
 gi|289443885|ref|ZP_06433629.1| GTP-binding protein Era [Mycobacterium tuberculosis T46]
 gi|289448006|ref|ZP_06437750.1| GTP-binding protein Era [Mycobacterium tuberculosis CPHL_A]
 gi|289553846|ref|ZP_06443056.1| GTP-binding protein era [Mycobacterium tuberculosis KZN 605]
 gi|289570506|ref|ZP_06450733.1| GTP-binding protein era [Mycobacterium tuberculosis T17]
 gi|289575058|ref|ZP_06455285.1| GTP-binding protein era [Mycobacterium tuberculosis K85]
 gi|289746142|ref|ZP_06505520.1| GTP-binding protein era [Mycobacterium tuberculosis 02_1987]
 gi|289750963|ref|ZP_06510341.1| GTP-binding protein era [Mycobacterium tuberculosis T92]
 gi|289754469|ref|ZP_06513847.1| GTP-binding protein Era [Mycobacterium tuberculosis EAS054]
 gi|289758488|ref|ZP_06517866.1| GTP-binding protein [Mycobacterium tuberculosis T85]
 gi|289762530|ref|ZP_06521908.1| GTP-binding protein era [Mycobacterium tuberculosis GM 1503]
 gi|294994532|ref|ZP_06800223.1| GTP-binding protein Era [Mycobacterium tuberculosis 210]
 gi|297634966|ref|ZP_06952746.1| GTP-binding protein Era [Mycobacterium tuberculosis KZN 4207]
 gi|297731958|ref|ZP_06961076.1| GTP-binding protein Era [Mycobacterium tuberculosis KZN R506]
 gi|298525846|ref|ZP_07013255.1| GTP-binding protein Era [Mycobacterium tuberculosis 94_M4241A]
 gi|306776629|ref|ZP_07414966.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu001]
 gi|306780402|ref|ZP_07418739.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu002]
 gi|306785152|ref|ZP_07423474.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu003]
 gi|306789513|ref|ZP_07427835.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu004]
 gi|306793838|ref|ZP_07432140.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu005]
 gi|306798235|ref|ZP_07436537.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu006]
 gi|306804111|ref|ZP_07440779.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu008]
 gi|306808683|ref|ZP_07445351.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu007]
 gi|306968512|ref|ZP_07481173.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu009]
 gi|306972741|ref|ZP_07485402.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu010]
 gi|307080446|ref|ZP_07489616.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu011]
 gi|307085042|ref|ZP_07494155.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu012]
 gi|313659292|ref|ZP_07816172.1| GTPase Era [Mycobacterium tuberculosis KZN V2475]
 gi|61223693|sp|P0A562|ERA_MYCTU RecName: Full=GTPase Era
 gi|61223694|sp|P0A563|ERA_MYCBO RecName: Full=GTPase Era
 gi|189037654|sp|A1KL54|ERA_MYCBP RecName: Full=GTPase Era
 gi|189037657|sp|A5U557|ERA_MYCTA RecName: Full=GTPase Era
 gi|254783661|sp|C1AQS7|ERA_MYCBT RecName: Full=GTPase Era
 gi|13882142|gb|AAK46727.1| GTP-binding protein, Era/ThdF family [Mycobacterium tuberculosis
           CDC1551]
 gi|31619134|emb|CAD97246.1| PROBABLE GTP-BINDING PROTEIN ERA [Mycobacterium bovis AF2122/97]
 gi|41353691|emb|CAE55479.1| PROBABLE GTP-BINDING PROTEIN ERA [Mycobacterium tuberculosis H37Rv]
 gi|121493891|emb|CAL72366.1| Probable GTP-binding protein era [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|134150655|gb|EBA42700.1| GTP-binding protein era [Mycobacterium tuberculosis str. Haarlem]
 gi|148506348|gb|ABQ74157.1| GTP-binding protein Era [Mycobacterium tuberculosis H37Ra]
 gi|148722094|gb|ABR06719.1| GTP-binding protein era [Mycobacterium tuberculosis F11]
 gi|224773850|dbj|BAH26656.1| GTP-binding protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320061|gb|ACT24664.1| GTP-binding protein era [Mycobacterium tuberculosis KZN 1435]
 gi|289416804|gb|EFD14044.1| GTP-binding protein Era [Mycobacterium tuberculosis T46]
 gi|289420964|gb|EFD18165.1| GTP-binding protein Era [Mycobacterium tuberculosis CPHL_A]
 gi|289438478|gb|EFD20971.1| GTP-binding protein era [Mycobacterium tuberculosis KZN 605]
 gi|289539489|gb|EFD44067.1| GTP-binding protein era [Mycobacterium tuberculosis K85]
 gi|289544260|gb|EFD47908.1| GTP-binding protein era [Mycobacterium tuberculosis T17]
 gi|289686670|gb|EFD54158.1| GTP-binding protein era [Mycobacterium tuberculosis 02_1987]
 gi|289691550|gb|EFD58979.1| GTP-binding protein era [Mycobacterium tuberculosis T92]
 gi|289695056|gb|EFD62485.1| GTP-binding protein Era [Mycobacterium tuberculosis EAS054]
 gi|289710036|gb|EFD74052.1| GTP-binding protein era [Mycobacterium tuberculosis GM 1503]
 gi|289714052|gb|EFD78064.1| GTP-binding protein [Mycobacterium tuberculosis T85]
 gi|298495640|gb|EFI30934.1| GTP-binding protein Era [Mycobacterium tuberculosis 94_M4241A]
 gi|308214948|gb|EFO74347.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu001]
 gi|308326724|gb|EFP15575.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu002]
 gi|308330137|gb|EFP18988.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu003]
 gi|308333998|gb|EFP22849.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu004]
 gi|308337779|gb|EFP26630.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu005]
 gi|308341460|gb|EFP30311.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu006]
 gi|308344946|gb|EFP33797.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu007]
 gi|308349257|gb|EFP38108.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu008]
 gi|308353877|gb|EFP42728.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu009]
 gi|308357822|gb|EFP46673.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu010]
 gi|308361768|gb|EFP50619.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu011]
 gi|308365390|gb|EFP54241.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu012]
 gi|323719031|gb|EGB28179.1| GTP-binding protein era [Mycobacterium tuberculosis CDC1551A]
 gi|326903980|gb|EGE50913.1| GTP-binding protein era [Mycobacterium tuberculosis W-148]
 gi|328458326|gb|AEB03749.1| GTP-binding protein era [Mycobacterium tuberculosis KZN 4207]
          Length = 300

 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 11/120 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NAL    VAI +  P TTR  +   +  + + + + DT G+    
Sbjct: 9   VCLVGRPNTGKSTLTNALVGAKVAITSTRPQTTRHAIRGIVHSDDFQIILVDTPGLHRPR 68

Query: 282 DIVEK---EGIKRTFLEVENADLILLLKE--------INSKKEISFPKNIDFIFIGTKSD 330
            ++ K   + ++ T+  V+   L +   E        I  +   + P N   + I TK D
Sbjct: 69  TLLGKRLNDLVRETYAAVDVIGLCIPADEAIGPGDRWIVEQLRSTGPANTTLVVIVTKID 128


>gi|84496849|ref|ZP_00995703.1| GTP-binding protein Era [Janibacter sp. HTCC2649]
 gi|84383617|gb|EAP99498.1| GTP-binding protein Era [Janibacter sp. HTCC2649]
          Length = 317

 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 211 KLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           + G+  + GY      ++G  NAGKS+L NAL  + VAI +  P TTR
Sbjct: 8   EFGQPAKPGYVAGFACLIGRPNAGKSTLTNALVGEKVAITSSKPQTTR 55


>gi|315653638|ref|ZP_07906558.1| GTP-binding protein [Lactobacillus iners ATCC 55195]
 gi|315489000|gb|EFU78642.1| GTP-binding protein [Lactobacillus iners ATCC 55195]
          Length = 370

 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 15/111 (13%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKND-ISSHISQGKLGEIIR------NGYKIVILGHSNAG 231
           S+E  ++++  +E   + LF K   + S I +  + E+I           I  +G +N G
Sbjct: 120 SKESKIKDWMRQEANRNGLFPKKIFLLSAIKKRNIDELINYLATKGKNEDIYFVGTTNVG 179

Query: 232 KSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           KS+L NA+ +     K++   +  PGTT D + I L+   YLV   DT GI
Sbjct: 180 KSTLINAIIETRSEYKNLITTSKFPGTTLDSIKIPLNEGHYLV---DTPGI 227


>gi|288924557|ref|ZP_06418494.1| GTP-binding protein Era [Prevotella buccae D17]
 gi|288338344|gb|EFC76693.1| GTP-binding protein Era [Prevotella buccae D17]
          Length = 293

 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 6/101 (5%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ E   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTEDTQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFP-KNIDFI 323
           +++  +  +   + +AD++L + ++     +  P KN+DF+
Sbjct: 69  MQEMMLAFSESALADADVLLYVTDV-----VENPGKNVDFL 104


>gi|225627584|ref|ZP_03785621.1| GTP-binding proten HflX [Brucella ceti str. Cudo]
 gi|225617589|gb|EEH14634.1| GTP-binding proten HflX [Brucella ceti str. Cudo]
          Length = 505

 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 43/224 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 268 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLRRIRLPHGETVILSDTVGFISN 326

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  ADLIL +++I+     +  ++++ I   +G +   ++   E 
Sbjct: 327 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 386

Query: 339 YDHL--------------------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           ++ +                          +S+ TGEG++ L++ I++ ++     +   
Sbjct: 387 WNKIDNLDESAREAALRLAAAGSEEGRPIPVSAITGEGVDRLLSLIETRIAGALGSVDLV 446

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           +     HL  L    R+           G D+  ENL   SV +
Sbjct: 447 LSPFDLHL--LDWIYRH-----------GSDVQRENLEDGSVRI 477


>gi|147779064|emb|CAN64618.1| hypothetical protein VITISV_001358 [Vitis vinifera]
          Length = 593

 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 52/120 (43%), Gaps = 17/120 (14%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I  LKN   SH         I+    + I+G  N GKSSL N+L +  V  V   PG TR
Sbjct: 247 IKLLKNYSRSHE--------IKKSITVGIIGLPNVGKSSLINSLKRSHVVNVGATPGLTR 298

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-INSKKEI 314
               + LD    L+   D  G+     ++ K G   T + + N   I  L + IN  KEI
Sbjct: 299 SRQEVHLDKNVILL---DCPGV-----VMLKSGSNDTSIALRNCKRIEKLDDVINPVKEI 350


>gi|118576910|ref|YP_876653.1| GTPase [Cenarchaeum symbiosum A]
 gi|118195431|gb|ABK78349.1| GTPase [Cenarchaeum symbiosum A]
          Length = 360

 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 16/131 (12%)

Query: 194 NDILFLKNDISSHISQ-GKLGEIIRNGYK------IVILGHSNAGKSSLFNALA----KK 242
           NDI      + S +++ G+  E+ R   +      I + G+++AGK++LFN L     ++
Sbjct: 151 NDIKHRMTSVRSKLAKAGRQRELHRQARRRVGFGTISLAGYTSAGKTTLFNRLTGEAREE 210

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           DV   T +   TR V     D  G L+ ISDT G          E  K T  E+ + D+I
Sbjct: 211 DVRPFTTLSTMTRRV----GDGPGALL-ISDTVGFISKLPAYMIEAFKSTLEEMLHTDVI 265

Query: 303 LLLKEINSKKE 313
           LL+ +I+   E
Sbjct: 266 LLVVDISDTPE 276


>gi|15678878|ref|NP_275995.1| GTP1/OBG family GTP-binding protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621950|gb|AAB85356.1| GTP-binding protein, GTP1/OBG family [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 336

 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 26/167 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + + +VI G  N GKS+L   L   +   V D P TT+ +    L+ +   +++ DT G+
Sbjct: 161 DAFTVVIAGFPNVGKSTLLRTLTGAEPE-VADYPFTTKGIQIGHLERKWKRIQVIDTPGL 219

Query: 278 --RETDDIVEKEGIKRTFLEVEN-ADLILLLKEINS------KKEISFPKNIDFIF---- 324
             R  +D+   E   +  + +EN AD+I+ + + +       + + S    I  +F    
Sbjct: 220 LDRPVEDMNNIE--LQAMVALENIADVIMFIFDASETCGYTLESQYSLYLGIRSVFDIPV 277

Query: 325 --IGTKSDLYST--YTEEYDHL------ISSFTGEGLEELINKIKSI 361
             +  K DL     Y EEY ++      +S+F G G+ ++I K++ +
Sbjct: 278 VTVFNKMDLAENVKYLEEYINMVEDPLKVSAFEGRGVSKIIKKLEGL 324


>gi|24418386|sp|Q92JC9|ENGB_RICCN RecName: Full=Probable GTP-binding protein EngB
          Length = 212

 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 8/54 (14%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL-------DLEGY 267
           I  +G SN GKSSL N +   K++A V++ PG TR +   +L       DL GY
Sbjct: 42  IAFVGKSNVGKSSLINTICNNKNLAKVSNTPGRTRQINFFNLADKLIIVDLPGY 95


>gi|114564471|ref|YP_751985.1| GTP-binding protein, HSR1-related [Shewanella frigidimarina NCIMB
           400]
 gi|114335764|gb|ABI73146.1| GTP-binding protein, HSR1-related [Shewanella frigidimarina NCIMB
           400]
          Length = 435

 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 48/234 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279
           + ++G++NAGKS+LFNAL   DV     +  T    L   L L    V ++DT G IR  
Sbjct: 200 VSLVGYTNAGKSTLFNALTSSDVYAADQLFATLDPTLR-KLSLPDGAVILADTVGFIRHL 258

Query: 280 TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKNI 320
             D+V     K T  E   A+++L                   +L+EI++ +       I
Sbjct: 259 PHDLV--AAFKATLQETRQAEILLHVVDCADDNMTENFDQVQKVLEEIDADE-------I 309

Query: 321 DFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
             + +  K DL   +    D+          +S+    G + L+  I  ++     +L  
Sbjct: 310 TQLIVCNKIDLLEDFAPRIDYDEDGKPERVWVSAQKRIGFDLLLKAITELIGEVICELTL 369

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419
            IP+   H  +L Q  R   +      D G  I++  L      RLA  S G++
Sbjct: 370 KIPASAGH--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDANWRRLAKQSQGEL 421


>gi|331014982|gb|EGH95038.1| hypothetical protein PLA106_03577 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 462

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  L+++ DT G+
Sbjct: 11  KLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVDGQALLELYDTPGL 69


>gi|326559210|gb|EGE09641.1| HSR1-related GTP-binding protein [Moraxella catarrhalis 46P47B1]
 gi|326569664|gb|EGE19716.1| HSR1-related GTP-binding protein [Moraxella catarrhalis BC1]
          Length = 466

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGY--LVKIS 272
           I+N   I I+GH+N GK+SL   L +  D   V +   TTR V+ +D+  +    L+ + 
Sbjct: 7   IKNLTTISIIGHTNVGKTSLLRTLLRDSDFGEVKNASATTRHVVAVDILSKDNVPLITLH 66

Query: 273 DTAGIRETDDIVE 285
           DT G+ +   +++
Sbjct: 67  DTPGLEDATGVMD 79


>gi|325690507|gb|EGD32510.1| GTP-binding protein HflX [Streptococcus sanguinis SK115]
          Length = 412

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T +++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKSQYEADELFATL-DATTKNINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLV 282


>gi|315185460|gb|EFU19231.1| ferrous iron transport protein B [Spirochaeta thermophila DSM 6578]
          Length = 747

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 10/105 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTA 275
           Y   ++G  N GK+S+FNA+  +    + + PG T +    +LT     E   ++I D  
Sbjct: 4   YTCALIGTPNTGKTSIFNAITNRT-EYIGNWPGVTIERTDGILTTVYQGEDVRLRIVDLP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320
           GI        +E +   F   E  DL+     IN    +S  KN+
Sbjct: 63  GIYHLGSSAPEERVAFEFFLNEKVDLV-----INVMDGLSLQKNL 102


>gi|298291760|ref|YP_003693699.1| GTP-binding proten HflX [Starkeya novella DSM 506]
 gi|296928271|gb|ADH89080.1| GTP-binding proten HflX [Starkeya novella DSM 506]
          Length = 463

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 7/109 (6%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           Y +V L G++NAGKS+LFN L + DV +  D+   T D     + L  G  + +SDT G 
Sbjct: 225 YPVVALVGYTNAGKSTLFNRLTRSDV-MAQDLLFATLDPTLRAVQLPSGERIILSDTVGF 283

Query: 278 RETDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
               D+  +     + T  EV  ADLIL +++++ +   +   +++ + 
Sbjct: 284 --ISDLPTQLVAAFRATLEEVIEADLILHVRDMSHEDAEAQAHDVEAVL 330


>gi|289548001|ref|YP_003472989.1| ferrous iron transporter B [Thermocrinis albus DSM 14484]
 gi|289181618|gb|ADC88862.1| ferrous iron transport protein B [Thermocrinis albus DSM 14484]
          Length = 643

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G+ N GK+SL N +A   +  V + PG T +     +    Y +   D  GI   +
Sbjct: 6   VALVGNPNVGKTSLLNHIAGTTLR-VGNWPGVTVEKREGKIFYGDYEITFVDLPGIYTLE 64

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            + E E I   FL+ E  DLI+
Sbjct: 65  PVSEDEQIAYHFLKEEKVDLII 86


>gi|239636883|ref|ZP_04677882.1| dynamin family protein [Staphylococcus warneri L37603]
 gi|239597557|gb|EEQ80055.1| dynamin family protein [Staphylococcus warneri L37603]
          Length = 1148

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 10/66 (15%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + +I +N + I  +GH +AGKS+L N L ++D+   + +P T+             +V +
Sbjct: 33  IKKIYKNQFTISFVGHFSAGKSTLINLLLEQDILPSSPVPTTSNTA----------IVSV 82

Query: 272 SDTAGI 277
           SDT  I
Sbjct: 83  SDTEDI 88


>gi|74316620|ref|YP_314360.1| GTP-binding protein HflX [Thiobacillus denitrificans ATCC 25259]
 gi|74056115|gb|AAZ96555.1| GTP-binding protein HflX [Thiobacillus denitrificans ATCC 25259]
          Length = 389

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 32/171 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVL---TIDLDLEGY-LVKISD 273
           + ++G++NAGKS+LFNAL +        +   +  TTR +      D D  G   V +SD
Sbjct: 200 VALVGYTNAGKSTLFNALTRAGTYAADQLFATLDTTTRKIFLPRLADADEPGSGEVVLSD 259

Query: 274 TAG--IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGT-- 327
           T G   R   D+V     + T      ADL+L + + +S       + +D +   IG   
Sbjct: 260 TVGFITRLPHDLV--AAFRATLEATAEADLLLHVIDASSPVRERQIEAVDQVLREIGADA 317

Query: 328 --------KSDLYSTYT----EEYDHL----ISSFTGEGLEELINKIKSIL 362
                   K DL +       +EYD L    +S+ TG GLE L + +   L
Sbjct: 318 VPQLRVYNKLDLTAAAPGVGRDEYDRLQSVYVSAQTGAGLELLRDALSETL 368


>gi|76155787|gb|AAX27064.2| SJCHGC02949 protein [Schistosoma japonicum]
          Length = 188

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           KI ++G  N+GKSSL N L K  V  V+    TTR   T     +   +   D  G+   
Sbjct: 65  KIAVIGCPNSGKSSLVNMLTKWKVCAVSGKAHTTRSKQTAAFFQDNVQLAFVDLPGLVSK 124

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
            + +   +EK  I+     + ++DLIL++ +++ K+
Sbjct: 125 SKASRFKLEKTFIRDPHSAIFDSDLILVVIDVSHKE 160


>gi|71004890|ref|XP_757111.1| hypothetical protein UM00964.1 [Ustilago maydis 521]
 gi|46096492|gb|EAK81725.1| hypothetical protein UM00964.1 [Ustilago maydis 521]
          Length = 736

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  GI
Sbjct: 345 VGYPNTGKSSIINTLKKKKVCNVAPIPGETKVWQYITLMRRIYLI---DCPGI 394


>gi|332366999|gb|EGJ44739.1| GTP-binding protein HflX [Streptococcus sanguinis SK1059]
          Length = 412

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T +++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKSQYEADELFATL-DATTKNINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLV 282


>gi|331003853|ref|ZP_08327345.1| GTP-binding protein HflX [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330412045|gb|EGG91442.1| GTP-binding protein HflX [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 415

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 23/168 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG- 276
            + + I+G++NAGKS+L N L    + +  D    T D  T  L L  G  + ++DT G 
Sbjct: 198 AFNVAIVGYTNAGKSTLLNKLTDAGI-LAEDKLFATLDPTTRKLKLGSGQEILVTDTVGF 256

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEISFPK-------NIDFIF 324
           IR+    +  E  K T  E + A+L++ +     +E  S+  + +         + D I 
Sbjct: 257 IRKLPHHL-IEAFKSTLEEAKYANLLIHMVDAANEEATSQMLVVYDTLRSLDVVDKDIIT 315

Query: 325 IGTKSDLYSTYTE-----EYDHLI--SSFTGEGLEELINKIKSILSNK 365
           +  K+DL     E       D ++  S+ TGEG++EL N I+ IL  +
Sbjct: 316 VFNKTDLMEEGMELPRDFHADKVLKMSAKTGEGIDELKNTIEDILKKQ 363


>gi|312871750|ref|ZP_07731838.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners LEAF 3008A-a]
 gi|329920071|ref|ZP_08276902.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners SPIN 1401G]
 gi|311092692|gb|EFQ51048.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners LEAF 3008A-a]
 gi|328936525|gb|EGG32969.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners SPIN 1401G]
          Length = 370

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 15/111 (13%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKND-ISSHISQGKLGEIIR------NGYKIVILGHSNAG 231
           S+E  ++++  +E   + LF K   + S I +  + E+I           I  +G +N G
Sbjct: 120 SKESKIKDWMRQEANRNGLFPKKIFLLSAIKKRNIDELINYLATKGKNEDIYFVGTTNVG 179

Query: 232 KSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           KS+L NA+ +     K++   +  PGTT D + I L+   YLV   DT GI
Sbjct: 180 KSTLINAIIETRSEYKNLITTSKFPGTTLDSIKIPLNEGHYLV---DTPGI 227


>gi|259500527|ref|ZP_05743429.1| GTP-binding protein [Lactobacillus iners DSM 13335]
 gi|302191217|ref|ZP_07267471.1| GTP-binding protein YqeH [Lactobacillus iners AB-1]
 gi|325912153|ref|ZP_08174551.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners UPII 143-D]
 gi|259167911|gb|EEW52406.1| GTP-binding protein [Lactobacillus iners DSM 13335]
 gi|325476103|gb|EGC79271.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners UPII 143-D]
          Length = 370

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 15/111 (13%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKND-ISSHISQGKLGEIIR------NGYKIVILGHSNAG 231
           S+E  ++++  +E   + LF K   + S I +  + E+I           I  +G +N G
Sbjct: 120 SKESKIKDWMRQEANRNGLFPKKIFLLSAIKKRNIDELINYLATKGKNEDIYFVGTTNVG 179

Query: 232 KSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           KS+L NA+ +     K++   +  PGTT D + I L+   YLV   DT GI
Sbjct: 180 KSTLINAIIETRSEYKNLITTSKFPGTTLDSIKIPLNEGHYLV---DTPGI 227


>gi|261345440|ref|ZP_05973084.1| GTP-binding protein Era [Providencia rustigianii DSM 4541]
 gi|282566487|gb|EFB72022.1| GTP-binding protein Era [Providencia rustigianii DSM 4541]
          Length = 302

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 37/190 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  ++ I+ + + Y +   DT G+   
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGINTE-DNYQIIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I EK  I R             L    +   I   + + F+  GT       +T + +
Sbjct: 68  --IEEKRAINR-------------LMNRAASSSIGDVELVIFVVEGTH------WTPDDE 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++  +      +  INKI +++ +K   LP        H+  +SQ + +L++  ++ E
Sbjct: 107 MVVNKLSSLRCPVILAINKIDNVV-DKTSLLP--------HIGMISQKMNFLDVVPISAE 157

Query: 398 KDCGLDIIAE 407
           K  G+D IA+
Sbjct: 158 KGQGVDTIAK 167


>gi|82703200|ref|YP_412766.1| GTPase EngB [Nitrosospira multiformis ATCC 25196]
 gi|119369223|sp|Q2Y797|ENGB_NITMU RecName: Full=Probable GTP-binding protein EngB
 gi|82411265|gb|ABB75374.1| cell division checkpoint GTPase YihA [Nitrosospira multiformis ATCC
           25196]
          Length = 235

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 10/59 (16%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTR---------DVLTIDLDLEGY 267
           G +I   G SNAGKSS  N LA ++ +A V+  PG T+         D   +DL   GY
Sbjct: 24  GVEIAFAGRSNAGKSSAINTLANRNRLAFVSKTPGRTQHLNFFRLGNDRFLVDLPGYGY 82


>gi|332158597|ref|YP_004423876.1| GTP-binding protein [Pyrococcus sp. NA2]
 gi|331034060|gb|AEC51872.1| GTP-binding protein [Pyrococcus sp. NA2]
          Length = 186

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 19/101 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-----------TIDLDLEGY-- 267
           K+ I+G  N GKS+L NAL     + V++ PGTT+  +           T+     G   
Sbjct: 3   KVAIIGAENVGKSTLMNALLGGKFSEVSETPGTTKGTIRRVFGKIKLPKTMKNPFGGADE 62

Query: 268 LVKISDTAGIRETD-----DIVEKEGIKRTFLEVENADLIL 303
           LV I DTAG+ + +      ++ +E  K    E+ NAD+I+
Sbjct: 63  LVLI-DTAGLFDPEKEVRGKVLSEEKFKELIREITNADIII 102


>gi|331086217|ref|ZP_08335299.1| GTP-binding protein engB [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406376|gb|EGG85890.1| GTP-binding protein engB [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 205

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +I   G SN GKSSL NAL  +K  A ++  PG T+ +   +++ E YLV
Sbjct: 25  EIAFAGKSNVGKSSLINALMNRKSYARISATPGKTQTINFYNINEEMYLV 74


>gi|325662425|ref|ZP_08151031.1| GTP-binding protein engB [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471259|gb|EGC74483.1| GTP-binding protein engB [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 205

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +I   G SN GKSSL NAL  +K  A ++  PG T+ +   +++ E YLV
Sbjct: 25  EIAFAGKSNVGKSSLINALMNRKSYARISATPGKTQTINFYNINEEMYLV 74


>gi|295706194|ref|YP_003599269.1| GTP-binding protein HflX [Bacillus megaterium DSM 319]
 gi|294803853|gb|ADF40919.1| GTP-binding protein HflX [Bacillus megaterium DSM 319]
          Length = 420

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVL 258
           + SH  + +      + Y+I I+G++NAGKS++FN L +  +     +   +  TTR   
Sbjct: 184 VVSHRERYRERRKRNHVYQIAIVGYTNAGKSTIFNRLTEAGIFEENQLFATLDPTTRQYT 243

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
                  G    ++DT G  +          + T  EV  ADL+L
Sbjct: 244 LPS----GLTALLTDTVGFIQDLPTTLVAAFRSTLEEVTEADLVL 284


>gi|229824094|ref|ZP_04450163.1| hypothetical protein GCWU000282_01398 [Catonella morbi ATCC 51271]
 gi|229786448|gb|EEP22562.1| hypothetical protein GCWU000282_01398 [Catonella morbi ATCC 51271]
          Length = 301

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+L N    + +AI++D   TTR+ +   L  +   +   D
Sbjct: 4   EAFKSGF-VAIIGRPNVGKSTLLNRFVGQKIAIMSDKAQTTRNRIQGVLTTDQAQIVFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           T GI +    +    +   +  ++  D +L +
Sbjct: 63  TPGIHKPKHALGDFMVNTAYSALKGVDAVLFV 94


>gi|145257462|ref|XP_001401745.1| nucleolar GTP-binding protein 2 [Aspergillus niger CBS 513.88]
 gi|134058659|emb|CAK38643.1| unnamed protein product [Aspergillus niger]
          Length = 560

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 9/101 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    + L    YL+   D  G
Sbjct: 325 RKQISVGFIGYPNTGKSSVINTLRKKKVCTVAPIPGETKVWQYVTLMKRIYLI---DCPG 381

Query: 277 IRETDDIVEKEGI-KRTFLEVENAD-----LILLLKEINSK 311
           +   +     E I  R  + VEN +     +  +LK +  K
Sbjct: 382 VVPPNPNDSPEDILLRGVVRVENVENPEQYIPAILKRVQPK 422


>gi|126466463|ref|YP_001041572.1| small GTP-binding protein [Staphylothermus marinus F1]
 gi|126015286|gb|ABN70664.1| small GTP-binding protein [Staphylothermus marinus F1]
          Length = 696

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 19/153 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKS+LFN L  + V  V + PG T +    +    G  +   D  GI      
Sbjct: 10  VIGQPNVGKSTLFNVLTGRKVH-VANWPGVTVEKHVGERIHRGRRIIFVDLPGIYGFSAT 68

Query: 284 VEKEGIKRTFLEVENADLILLLKE-INSKKEI-----SFPKNIDFIFIGTKSD------L 331
             +E I R ++  +  D++L+L + +N ++ +     +       I + TK D      +
Sbjct: 69  TIEERIARKYILTQQPDVLLVLVDSLNPERTMYLAIQALEITPRVILVFTKVDSVHAHGI 128

Query: 332 YSTYTEEYDHL------ISSFTGEGLEELINKI 358
           +  Y    + L      +SS TG G+ EL++ I
Sbjct: 129 HINYRALSNKLDVPVVPVSSATGVGIVELLDTI 161


>gi|125718243|ref|YP_001035376.1| HflX GTPase [Streptococcus sanguinis SK36]
 gi|125498160|gb|ABN44826.1| HflX GTPase, putative [Streptococcus sanguinis SK36]
          Length = 412

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T +++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKSQYEADELFATL-DATTKNINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLV 282


>gi|78779268|ref|YP_397380.1| small GTP-binding protein domain-containing protein
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712767|gb|ABB49944.1| Small GTP-binding protein domain [Prochlorococcus marinus str. MIT
           9312]
          Length = 499

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           + KN + S +  G         YK+ + G  ++GK+S+  +L K  V   +   GTT+++
Sbjct: 102 YQKNKLESQLKTG--------DYKVTLFGAGSSGKTSIARSLLKNIVGQTSAKIGTTKEI 153

Query: 258 --LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
               I + +    + I DT G+ E   + E E  K T ++  N+DL+L +
Sbjct: 154 NSYKIRIPILKRNINIIDTPGLFEPSKLGE-EREKTTIIQASNSDLVLFV 202


>gi|325967821|ref|YP_004244013.1| type II secretion system protein E [Vulcanisaeta moutnovskia
           768-28]
 gi|323707024|gb|ADY00511.1| type II secretion system protein E [Vulcanisaeta moutnovskia
           768-28]
          Length = 520

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           I  GKL   +RNGY ++I+G  ++GK++L NAL
Sbjct: 316 IEAGKLTIALRNGYSVLIMGPPSSGKTTLLNAL 348


>gi|229011338|ref|ZP_04168529.1| GTPase [Bacillus mycoides DSM 2048]
 gi|228749855|gb|EEL99689.1| GTPase [Bacillus mycoides DSM 2048]
          Length = 346

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI-------PGTTRDVLTIDLDL 264
           L + +  G  I ++G S AGKS+L NAL   DVA   DI         TT       L  
Sbjct: 186 LQQFVSPGKTIALVGSSGAGKSTLLNALIGTDVAKTGDIREEDSKGRHTTTHRELFQLPS 245

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            G ++   DT G+RE         I+ TF ++E+
Sbjct: 246 GGLVI---DTPGMRELQLWEGSTAIQTTFSDIED 276


>gi|227825057|ref|ZP_03989889.1| small GTP-binding protein [Acidaminococcus sp. D21]
 gi|226905556|gb|EEH91474.1| small GTP-binding protein [Acidaminococcus sp. D21]
          Length = 605

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 27/177 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGI-- 277
           ++ ++G++NAGKSSL NAL   ++     +  T  D  T  L L    V  ++DT G   
Sbjct: 385 QVCLVGYTNAGKSSLLNALTHSEIYAENQLFATL-DPTTRQLSLPNKEVCTLTDTVGFIQ 443

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL----LLKEINSKKEISFPKNIDFIFIGTKSDLYS 333
           R    +V     + T   V+ ADL+L    +  E++ K+E +    +  + + T + + +
Sbjct: 444 RLPHQLV--AAFRSTLEVVKGADLLLHVIDVSHELHEKQEEAVLSVLKELGV-TDTPILT 500

Query: 334 TYTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            Y +                E    IS+ +GEG+  LI KI S L+    ++   IP
Sbjct: 501 VYNKIDKLPDHEGLKKRLDREESLAISARSGEGIPALIKKIASFLNEGKTEVTLLIP 557


>gi|217968947|ref|YP_002354181.1| GTP-binding protein HSR1-related [Thauera sp. MZ1T]
 gi|217506274|gb|ACK53285.1| GTP-binding protein HSR1-related [Thauera sp. MZ1T]
          Length = 462

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 11/75 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           ++ ++GH+N GK+SL   LA +DV    V+D  GTTR V  + L  +G    ++ DT G+
Sbjct: 6   RVAVVGHTNTGKTSLLRTLA-RDVGFGEVSDSAGTTRHVEGLRLMADGVPAAELFDTPGM 64

Query: 278 RET-------DDIVE 285
            +        DD+V+
Sbjct: 65  EDAIALLEFIDDLVD 79


>gi|169634287|ref|YP_001708023.1| GTP-binding protein [Acinetobacter baumannii SDF]
 gi|169153079|emb|CAP02149.1| GTP-binding protein [Acinetobacter baumannii]
          Length = 444

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 8/121 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           + ++G++NAGKS+LFN LAK DV     +  T    L  ++ D  G +V ++DT G +R 
Sbjct: 202 VSLVGYTNAGKSTLFNILAKSDVYAADQLFATLDPTLRRLEWDGIGTVV-LADTVGFVRN 260

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYT 336
              D+V  E  K T  E   A L+L + + +S   +   K ++ +   IG  + +   Y 
Sbjct: 261 LQHDLV--ESFKATLEETLEATLLLHVIDSSSHDMLDQIKAVEGVLKEIGADAPVLRVYN 318

Query: 337 E 337
           +
Sbjct: 319 K 319


>gi|156101846|ref|XP_001616616.1| small GTP-binding protein domain containing protein [Plasmodium
           vivax SaI-1]
 gi|148805490|gb|EDL46889.1| small GTP-binding protein domain containing protein [Plasmodium
           vivax]
          Length = 499

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 16/112 (14%)

Query: 204 SSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           S++++  K+ E   N    K+ ++G  NAGKSSL N++  K ++ V+    TTR      
Sbjct: 87  SAYMNTWKIPEQPANPKFLKVALIGAPNAGKSSLLNSILNKTISAVSPKINTTRQ----- 141

Query: 262 LDLEGYLVKIS------DTAGIRETDDIVE--KEGIKRTFLEVENADLILLL 305
            D++G   K +      D+ GI  +    +  KE +   +   E ADL+L +
Sbjct: 142 -DIKGIYTKDNVQLIFIDSPGIVPSHKKKKFCKELVSYAWKGYEEADLVLFI 192


>gi|119502793|ref|ZP_01624878.1| probable GTP-binding protein [marine gamma proteobacterium
           HTCC2080]
 gi|119461139|gb|EAW42229.1| probable GTP-binding protein [marine gamma proteobacterium
           HTCC2080]
          Length = 405

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 2/104 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRET 280
           + I+G++NAGKS+LFN  A  DV     +  T    L  +++   G +V ++DT G    
Sbjct: 188 VSIVGYTNAGKSTLFNRYASADVYAADQLFATLDPTLRRVEIPHLGDVV-LADTVGFISD 246

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
                 +  K T  E  NADL++ + ++++ +   +   +D + 
Sbjct: 247 LPHTLIDAFKATLEETLNADLLIHVIDVSADQREYWMSEVDLVL 290


>gi|50729046|ref|XP_416404.1| PREDICTED: similar to RAS-like, estrogen-regulated, growth
           inhibitor [Gallus gallus]
 gi|326912368|ref|XP_003202524.1| PREDICTED: ras-related and estrogen-regulated growth inhibitor-like
           [Meleagris gallopavo]
          Length = 199

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 31/154 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           K+ I G +  GKS+L      K      D  +  T R   TID ++    ++I DTAG  
Sbjct: 8   KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEV--VSMEILDTAG-- 63

Query: 279 ETDDIVEKEGIKRT---FLEVENA------DLILLLKEINSKKEISFPKNIDFIFIGTKS 329
             +D ++KEG  R    F+ V +       + +L LK  N   E+  PKN+  I +G K+
Sbjct: 64  -QEDAIQKEGHVRWGEGFVLVYDITDRGSFEEVLPLK--NLLDEVKKPKNVTLILVGNKA 120

Query: 330 DL---YSTYTEEYDHL----------ISSFTGEG 350
           DL       TEE + L           S+ TGEG
Sbjct: 121 DLDHSRQVSTEEGEKLATELACAFYECSACTGEG 154


>gi|20807122|ref|NP_622293.1| GTPase [Thermoanaerobacter tengcongensis MB4]
 gi|254479256|ref|ZP_05092599.1| putative small GTP-binding protein domain protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|24418374|sp|Q8RC22|ENGB_THETN RecName: Full=Probable GTP-binding protein EngB
 gi|20515616|gb|AAM23897.1| predicted GTPases [Thermoanaerobacter tengcongensis MB4]
 gi|214034794|gb|EEB75525.1| putative small GTP-binding protein domain protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 194

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 221 KIVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTRDV 257
           +I I+G SN GKS+L N  L +K++A V+  PG TR +
Sbjct: 25  QIAIVGKSNVGKSTLINTVLGRKNLAKVSSTPGKTRGI 62


>gi|309807137|ref|ZP_07701114.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners LactinV
           03V1-b]
 gi|308166488|gb|EFO68690.1| ribosome biogenesis GTPase YqeH [Lactobacillus iners LactinV
           03V1-b]
          Length = 370

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 15/111 (13%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKND-ISSHISQGKLGEIIR------NGYKIVILGHSNAG 231
           S+E  ++++  +E   + LF K   + S I +  + E+I           I  +G +N G
Sbjct: 120 SKESKIKDWMRQEANRNGLFPKKIFLLSAIKKRNIDELINYLATKGKNEDIYFVGTTNVG 179

Query: 232 KSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           KS+L NA+ +     K++   +  PGTT D + I L+   YLV   DT GI
Sbjct: 180 KSTLINAIIETRSEYKNLITTSKFPGTTLDSIKIPLNEGHYLV---DTPGI 227


>gi|256375392|ref|YP_003099052.1| GTP-binding protein Era [Actinosynnema mirum DSM 43827]
 gi|255919695|gb|ACU35206.1| GTP-binding protein Era [Actinosynnema mirum DSM 43827]
          Length = 298

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   + G  NAGKS+L NAL    VAI +  P TTR  +   +  E   + + DT G
Sbjct: 5   RSGFACFV-GRPNAGKSTLTNALVGTKVAITSSKPQTTRHTIRGIVHREDGQLILVDTPG 63

Query: 277 I 277
           +
Sbjct: 64  L 64


>gi|168705648|ref|ZP_02737925.1| tRNA modification GTPase TrmE [Gemmata obscuriglobus UQM 2246]
          Length = 101

 Score = 37.4 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 6  ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASL-RYFFGLDGRILDK 63
          +T+  V T     AI+ + + GP  +++   + K   KP P    + R++FG  G   D+
Sbjct: 3  DTLVTVLTPPGTGAIATVEVRGPRAWELARALFKPAGKPLPEAPDVDRFWFGTLGA--DE 60

Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL 99
           +L +       T  D+ E H HGG  VV  ++E+ 
Sbjct: 61 VVLAI-------TAPDAVEVHCHGGRRVVRWVVEQF 89


>gi|119896543|ref|YP_931756.1| hypothetical protein azo0252 [Azoarcus sp. BH72]
 gi|119668956|emb|CAL92869.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 451

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIR 278
           +I ++GH+N GK+SL   LA+      V+D  G+TR V  + L  +G  ++++ DT G+ 
Sbjct: 5   RIAVVGHTNTGKTSLLRTLARDAGFGEVSDRAGSTRHVEGLRLFADGEAVIELFDTPGME 64

Query: 279 ETDDIVEK-EGI 289
           +   ++E  EG+
Sbjct: 65  DAIALLEHLEGL 76


>gi|302340172|ref|YP_003805378.1| GTP-binding protein Era [Spirochaeta smaragdinae DSM 11293]
 gi|301637357|gb|ADK82784.1| GTP-binding protein Era [Spirochaeta smaragdinae DSM 11293]
          Length = 294

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 41/84 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  + GKS+L N L  + ++IV   P TTR  +   L  E   +  +DT G   +D
Sbjct: 8   ITLIGRPSVGKSTLVNCLCGRKISIVAPSPQTTRSTVRGILTEERGQLVFADTPGYHISD 67

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             + +     T   +E  +L+L +
Sbjct: 68  KKLNRYLKTATEAALEECELVLYI 91


>gi|260434394|ref|ZP_05788364.1| small GTP-binding protein [Synechococcus sp. WH 8109]
 gi|260412268|gb|EEX05564.1| small GTP-binding protein [Synechococcus sp. WH 8109]
          Length = 431

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 8/88 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIP-GTTRDVLTIDLDLE--GYL-VKISDTAGI 277
           I + G    GKSSL NAL ++ + + TD+  G+TR    +D  +E  G   V++ DT GI
Sbjct: 57  IALFGRVGVGKSSLINALIRQPL-LATDVAHGSTRHQQAVDWPVEIAGLTRVELVDTPGI 115

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305
            E D         R  +    ADL+LL+
Sbjct: 116 DEIDAAGRARLASRVAM---GADLVLLV 140


>gi|254496731|ref|ZP_05109592.1| GTP binding protein HflX [Legionella drancourtii LLAP12]
 gi|254354047|gb|EET12721.1| GTP binding protein HflX [Legionella drancourtii LLAP12]
          Length = 418

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 10/105 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAG-IRE 279
           + ++G++NAGKS+LFNAL  + + +   +  T  D     L L G   V ++DT G IR+
Sbjct: 200 VSLVGYTNAGKSTLFNALTGERIYVANQLFATL-DPTMRQLSLPGASGVILADTVGFIRD 258

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
               +  E  + T  E + ADL+L +       +IS P   D +F
Sbjct: 259 LPHHL-VEAFRATLEETQQADLLLHV------IDISDPHWRDTVF 296


>gi|199598205|ref|ZP_03211627.1| Predicted GTPase [Lactobacillus rhamnosus HN001]
 gi|229552143|ref|ZP_04440868.1| GTPase [Lactobacillus rhamnosus LMS2-1]
 gi|258508348|ref|YP_003171099.1| ribosome biogenesis GTP-binding protein YsxC [Lactobacillus
           rhamnosus GG]
 gi|258539557|ref|YP_003174056.1| ribosome biogenesis GTP-binding protein YsxC [Lactobacillus
           rhamnosus Lc 705]
 gi|199590966|gb|EDY99050.1| Predicted GTPase [Lactobacillus rhamnosus HN001]
 gi|229314445|gb|EEN80418.1| GTPase [Lactobacillus rhamnosus LMS2-1]
 gi|257148275|emb|CAR87248.1| GTP-binding protein engB [Lactobacillus rhamnosus GG]
 gi|257151233|emb|CAR90205.1| GTP-binding protein engB [Lactobacillus rhamnosus Lc 705]
 gi|259649662|dbj|BAI41824.1| putative GTPase [Lactobacillus rhamnosus GG]
          Length = 199

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +I  LG SN GKSSL N L K K +A  + +PG T+ +   DLD   + V +
Sbjct: 25  EIAFLGRSNVGKSSLINKLIKRKAMARTSSVPGKTQTLNFYDLDSRLFFVDV 76


>gi|15892061|ref|NP_359775.1| GTPase EngB [Rickettsia conorii str. Malish 7]
 gi|15619181|gb|AAL02676.1| hypothetical GTP-binding protein [Rickettsia conorii str. Malish 7]
          Length = 236

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 8/54 (14%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL-------DLEGY 267
           I  +G SN GKSSL N +   K++A V++ PG TR +   +L       DL GY
Sbjct: 66  IAFVGKSNVGKSSLINTICNNKNLAKVSNTPGRTRQINFFNLADKLIIVDLPGY 119


>gi|288930106|ref|ZP_06423944.1| GTP-binding protein Era [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328579|gb|EFC67172.1| GTP-binding protein Era [Prevotella sp. oral taxon 317 str. F0108]
          Length = 293

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++     +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTPEMQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  +  +   + +AD++L + ++    E    KN DF+
Sbjct: 69  LQESMLAFSVSALSDADVLLYVTDVVEDPE----KNADFL 104


>gi|281425283|ref|ZP_06256196.1| hypothetical protein HMPREF0971_02255 [Prevotella oris F0302]
 gi|281400576|gb|EFB31407.1| GTP-binding protein Era [Prevotella oris F0302]
          Length = 293

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTDDCQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  +  +   + +AD++L + ++    E    KN+DF+
Sbjct: 69  MQEMMLAFSESALTDADILLYVTDVVENPE----KNMDFL 104


>gi|257481813|ref|ZP_05635854.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289627989|ref|ZP_06460943.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646457|ref|ZP_06477800.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330866582|gb|EGH01291.1| GTP-binding protein YsxC [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330890983|gb|EGH23644.1| GTP-binding protein YsxC [Pseudomonas syringae pv. mori str.
           301020]
 gi|330986811|gb|EGH84914.1| GTP-binding protein YsxC [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331009448|gb|EGH89504.1| GTP-binding protein YsxC [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 211

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ N IL L    +  +S  K+ +   + G+++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QLKNPILGLCQQATFMLSAAKVDQCPDDEGFEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTR--DVLTID-----LDLEGY 267
            PG T+  +   +D     +DL GY
Sbjct: 62  TPGRTQLLNFFGLDEDRRLVDLPGY 86


>gi|194742485|ref|XP_001953733.1| GF17911 [Drosophila ananassae]
 gi|190626770|gb|EDV42294.1| GF17911 [Drosophila ananassae]
          Length = 581

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L +    +V   PG T+ +  ++LD +   +K+ D  
Sbjct: 263 IKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKAMQEVELDSK---IKLIDCP 319

Query: 276 GI 277
           GI
Sbjct: 320 GI 321


>gi|156060781|ref|XP_001596313.1| hypothetical protein SS1G_02533 [Sclerotinia sclerotiorum 1980]
 gi|154699937|gb|EDN99675.1| hypothetical protein SS1G_02533 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 615

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+       
Sbjct: 326 RKQISVGFIGYPNTGKSSIINTLRKKKVCTVAPIPGETKVWQYITLMKRIYLIDCPGVVP 385

Query: 277 IRETDDIVEKEGIKRTFLEVENAD 300
              TD    ++ + R  + VEN +
Sbjct: 386 PSTTD--TPQDILLRGVVRVENVE 407


>gi|28867574|ref|NP_790193.1| GTP-binding protein EngB [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213971017|ref|ZP_03399138.1| GTP-binding protein EngB [Pseudomonas syringae pv. tomato T1]
 gi|301385580|ref|ZP_07233998.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas syringae
           pv. tomato Max13]
 gi|302058836|ref|ZP_07250377.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas syringae
           pv. tomato K40]
 gi|302132135|ref|ZP_07258125.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|38372197|sp|Q88AP4|ENGB_PSESM RecName: Full=Probable GTP-binding protein EngB
 gi|28850809|gb|AAO53888.1| GTP-binding protein EngB [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924253|gb|EEB57827.1| GTP-binding protein EngB [Pseudomonas syringae pv. tomato T1]
 gi|331014879|gb|EGH94935.1| GTP-binding protein YsxC [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 211

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ N IL L    +  +S  K+ +   + G+++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QLKNPILGLCQQATFMLSAAKVDQCPDDEGFEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTR--DVLTID-----LDLEGY 267
            PG T+  +   +D     +DL GY
Sbjct: 62  TPGRTQLLNFFGLDEDRRLVDLPGY 86


>gi|332362077|gb|EGJ39879.1| GTP-binding protein HflX [Streptococcus sanguinis SK49]
          Length = 412

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T +++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKSQYEADELFATL-DATTKNINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLV 282


>gi|328957635|ref|YP_004375021.1| putative GTP-binding protein protease modulator [Carnobacterium sp.
           17-4]
 gi|328673959|gb|AEB30005.1| putative GTP-binding protein protease modulator [Carnobacterium sp.
           17-4]
          Length = 423

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 21/171 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I ++G++NAGKS+L N L + D      +  T  D LT  L L  G  V ++DT G  
Sbjct: 207 FQIGLMGYTNAGKSTLLNKLTQADTYEENQLFATL-DPLTRQLLLPSGMTVTLTDTVGFI 265

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFI 325
           +       E  K T  E +  DL+L + + +++             KE+   ++I  I +
Sbjct: 266 QDLPTQLIESFKSTLEETKGVDLLLHVVDASAENMAGHEQTVVQLLKELGM-ESIPMITV 324

Query: 326 GTKSDLYSTYTEEYDHLISS-FTGEGLEELINKIKSILSNKFKKL--PFSI 373
             K DL       Y  L  + F      E IN++ S + NK K+L  P+ I
Sbjct: 325 YNKKDLVEDAF--YPSLFPNVFISANDPEDINQLLSEIMNKMKELMVPYRI 373


>gi|220927637|ref|YP_002504546.1| GTP-binding proten HflX [Clostridium cellulolyticum H10]
 gi|219997965|gb|ACL74566.1| GTP-binding proten HflX [Clostridium cellulolyticum H10]
          Length = 596

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 34/179 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG-IRE 279
           + I+G++NAGKS+L N      V  V D    T D     L L +G    + DT G IR+
Sbjct: 380 VAIVGYTNAGKSTLLNRFCGSSV-FVEDKLFATLDPSARQLTLSDGREAVLIDTVGFIRK 438

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPKNI---------DFIFIG 326
              D++  E  K T  E  +AD++L + +    N   +IS  + +           I + 
Sbjct: 439 LPHDLI--EAFKSTLEEAVHADMLLHVVDASNENVSMQISVVEKLLEELGASTKRTILVL 496

Query: 327 TKSDL-----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            K DL           YS   E     IS+ TG G+E+L+ KI     ++ K++   +P
Sbjct: 497 NKQDLVQEDRRISSVGYSAVCE-----ISAVTGYGIEQLLEKITEGFMHQLKEVQLLVP 550


>gi|254481405|ref|ZP_05094650.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2148]
 gi|214038568|gb|EEB79230.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2148]
          Length = 299

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 4/91 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R GY + I+G  N GKS+L N +  + ++I +  P TTR  VL I  + +  ++ + DT 
Sbjct: 7   RCGY-VAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHQVLGIKTENDSQVIFV-DTP 64

Query: 276 GIRETDDIVEKEGIKRTFLE-VENADLILLL 305
           G+ + ++      + R     +++ DLIL L
Sbjct: 65  GLHKAEEKAINRYMNRAASSAIKHVDLILFL 95


>gi|157150665|ref|YP_001450282.1| GTP-binding protein HflX [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075459|gb|ABV10142.1| GTP-binding protein HflX [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 412

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T +++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKSQYEADELFATL-DATTKNINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLV 282


>gi|289674483|ref|ZP_06495373.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas syringae
           pv. syringae FF5]
 gi|302188970|ref|ZP_07265643.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas syringae
           pv. syringae 642]
 gi|119369236|sp|Q4ZZT0|ENGB_PSEU2 RecName: Full=Probable GTP-binding protein EngB
 gi|330938833|gb|EGH42352.1| GTP-binding protein YsxC [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330952068|gb|EGH52328.1| GTP-binding protein YsxC [Pseudomonas syringae Cit 7]
 gi|330977285|gb|EGH77240.1| GTP-binding protein YsxC [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 211

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ N IL L    +  +S  K+ +   + G+++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QLKNPILGLCQQATFMLSAAKVDQCPDDEGFEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTR--DVLTID-----LDLEGY 267
            PG T+  +   +D     +DL GY
Sbjct: 62  TPGRTQLLNFFGLDEDRRLVDLPGY 86


>gi|83747953|ref|ZP_00944984.1| HflX [Ralstonia solanacearum UW551]
 gi|207723170|ref|YP_002253569.1| gtpase protein [Ralstonia solanacearum MolK2]
 gi|207743437|ref|YP_002259829.1| gtpase protein [Ralstonia solanacearum IPO1609]
 gi|83725371|gb|EAP72518.1| HflX [Ralstonia solanacearum UW551]
 gi|206588364|emb|CAQ35327.1| gtpase protein [Ralstonia solanacearum MolK2]
 gi|206594834|emb|CAQ61761.1| gtpase protein [Ralstonia solanacearum IPO1609]
          Length = 429

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           + + + ++G++NAGKS+LFNAL K        +  T  D  +  L LEG   V +SDT G
Sbjct: 212 DAFSVSLVGYTNAGKSTLFNALTKARAYAANQLFATL-DTTSRRLYLEGLGNVVLSDTVG 270


>gi|327461198|gb|EGF07531.1| GTP-binding protein HflX [Streptococcus sanguinis SK1057]
          Length = 412

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T +++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKSQYEADELFATL-DATTKNINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLV 282


>gi|298345520|ref|YP_003718207.1| GTP-binding protein [Mobiluncus curtisii ATCC 43063]
 gi|298235581|gb|ADI66713.1| GTP-binding protein [Mobiluncus curtisii ATCC 43063]
          Length = 315

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 11/87 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNAL---AKKDVAIVTDIPG----TTRDVLTIDLDLEGYLVK 270
            G   V+LGHS  GKS+L NAL   A +    V ++ G    T+   + + +  +G+L+ 
Sbjct: 186 QGEVTVLLGHSGVGKSTLVNALVPGANRATGEVNEVTGKGRHTSTSAVALPIGSQGWLI- 244

Query: 271 ISDTAGIRETD-DIVEKEGIKRTFLEV 296
             DT G+R      V+  G+ R F E+
Sbjct: 245 --DTPGVRSFGLAHVDAAGLLRGFTEL 269


>gi|241890099|ref|ZP_04777397.1| ribosome biogenesis GTP-binding protein YlqF [Gemella haemolysans
           ATCC 10379]
 gi|241863721|gb|EER68105.1| ribosome biogenesis GTP-binding protein YlqF [Gemella haemolysans
           ATCC 10379]
          Length = 292

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 7/79 (8%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   I+  +++G     IR+    +++G  N GKS+  N L KK+VA   + PG T+   
Sbjct: 104 LAEKIARQVAKGIKPRAIRS----MVIGVPNVGKSTFINKLIKKNVANTANKPGVTKKQQ 159

Query: 259 TIDLDLEGYLVKISDTAGI 277
            + L+ +   +++ DT GI
Sbjct: 160 WLKLNKD---IELLDTPGI 175


>gi|295664617|ref|XP_002792860.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226278381|gb|EEH33947.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 319

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 25/160 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-------------DVLTIDLDLEGY 267
           ++V LG SN GKSSL NAL ++DV   +   G T              +   + +D  GY
Sbjct: 85  EVVFLGRSNVGKSSLLNALMERDVCYTSSKLGRTHTLNAYGVGGRKDGEARVVLVDTPGY 144

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVE--------NADLILLLKEINSKKEISFPKN 319
               ++  G      + +++ ++RTF+ V+        + D+  LL+      ++   K 
Sbjct: 145 GKGSNEKWGEEIIKYLTKRKQLRRTFVLVDSHHGIKPGDRDVFSLLRSAAIPHQVILSKA 204

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
              +  G    +    TE     ++SF     E +++K++
Sbjct: 205 DSVLVKGNSKRVPRGITEAKVRKLASFA----ERILSKVQ 240


>gi|116515192|ref|YP_802821.1| EngB [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116257046|gb|ABJ90728.1| putative GTPase, involved in coordination of cell cycle, engB
           family [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 202

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDV 257
           I+S I+   LG    +G ++  LG+SN GKS++ N L+  + +A ++ +PG T+ +
Sbjct: 12  ITSIINYSNLGTF--SGIEVAFLGYSNVGKSTMINCLSGNNKIARISKLPGRTKTI 65


>gi|85086274|ref|XP_957666.1| protein GCN20 [Neurospora crassa OR74A]
 gi|28918760|gb|EAA28430.1| protein GCN20 [Neurospora crassa OR74A]
 gi|39979249|emb|CAE85618.1| probable positive effector protein GCN20 [Neurospora crassa]
          Length = 749

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 14/94 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G++  ++GH+  GKS+L  AL++++V I T I      +L ++ +L G      DT  I+
Sbjct: 222 GHRYGLVGHNGVGKSTLLRALSRREVPIPTHI-----SILHVEQELTG-----DDTPAIQ 271

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
              D      + R  L  E A++I  L +I +++
Sbjct: 272 AVLDA----DVWRKVLLKEQAEIIKKLADIEAQR 301


>gi|323351342|ref|ZP_08086998.1| GTP-binding protein HflX [Streptococcus sanguinis VMC66]
 gi|322122566|gb|EFX94277.1| GTP-binding protein HflX [Streptococcus sanguinis VMC66]
          Length = 412

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T +++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKSQYEADELFATL-DATTKNINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLV 282


>gi|227499850|ref|ZP_03929943.1| HflX subfamily GTP-binding protein [Anaerococcus tetradius ATCC
           35098]
 gi|227217959|gb|EEI83232.1| HflX subfamily GTP-binding protein [Anaerococcus tetradius ATCC
           35098]
          Length = 418

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 26/182 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           ++ + I ++G++NAGKS++ N +     ++      D+   T D  T  LD     V ++
Sbjct: 192 KDVHNISLVGYTNAGKSTILNGMLNLFGEEKFVYSDDLLFATLDTSTRRLDFSNTKVTLT 251

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI-----SFPKNIDFIFIGT 327
           DT G  +       +    T  EV  AD++L++  I+S   I     +  K++  I IG 
Sbjct: 252 DTVGFIDNLSKELNDSFLTTLDEVRFADMLLIV--IDSSHNIDHQLKTIEKSLADIDIGD 309

Query: 328 KSDLY--------------STYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           K  LY              S Y  + + + IS+   + L  L  KI SI+   +K +   
Sbjct: 310 KEILYVFNKMDKVENELKVSLYKRDAEKIYISAHKDQDLVRLKEKIVSIIKEDYKLVSMH 369

Query: 373 IP 374
           IP
Sbjct: 370 IP 371


>gi|225464244|ref|XP_002267566.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297744311|emb|CBI37281.3| unnamed protein product [Vitis vinifera]
          Length = 596

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 52/120 (43%), Gaps = 17/120 (14%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I  LKN   SH         I+    + I+G  N GKSSL N+L +  V  V   PG TR
Sbjct: 252 IKLLKNYSRSHE--------IKTSITVGIIGLPNVGKSSLINSLKRSHVVNVGATPGLTR 303

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-INSKKEI 314
               + LD    L+   D  G+     ++ K G   T + + N   I  L + IN  KEI
Sbjct: 304 SRQEVHLDKNVILL---DCPGV-----VMLKSGSNDTSIALRNCKRIEKLDDVINPVKEI 355


>gi|237808890|ref|YP_002893330.1| ferrous iron transport protein B [Tolumonas auensis DSM 9187]
 gi|237501151|gb|ACQ93744.1| ferrous iron transport protein B [Tolumonas auensis DSM 9187]
          Length = 759

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           + IV +G+ N+GK+SLFNAL   +   V +  G T D  T     E Y  ++ D  GI  
Sbjct: 3   HHIVTVGNPNSGKTSLFNALTGANQQ-VGNWSGVTVDKKTGQFQFEDYAYELVDLPGIYA 61

Query: 279 -ETDDIVEKEGIKRTFLEVENADLIL 303
            E+ D    E I   ++     DL++
Sbjct: 62  LESRDSSIDEQIAFRYVMNNKPDLVI 87


>gi|183599776|ref|ZP_02961269.1| hypothetical protein PROSTU_03284 [Providencia stuartii ATCC 25827]
 gi|188022040|gb|EDU60080.1| hypothetical protein PROSTU_03284 [Providencia stuartii ATCC 25827]
          Length = 302

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 37/190 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  ++ I  + E Y +   DT G+   
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEDE-YQIIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I EK  I R             L    +   I   + + F+  GT       +T++ +
Sbjct: 68  --IEEKRAINR-------------LMNRAASSSIGDVELVIFVVEGT------NWTDDDE 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++   G     +  INKI ++ ++K   LP        H+  +SQ + +L++  ++ E
Sbjct: 107 MVLNKLKGLRCPVILAINKIDNV-TDKTVLLP--------HIGFVSQKMNFLDVVPISAE 157

Query: 398 KDCGLDIIAE 407
           K  G+D IA+
Sbjct: 158 KGKGVDTIAK 167


>gi|149020286|ref|ZP_01835178.1| GTP-binding protein HflX [Streptococcus pneumoniae SP23-BS72]
 gi|147930588|gb|EDK81570.1| GTP-binding protein HflX [Streptococcus pneumoniae SP23-BS72]
          Length = 412

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNILTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTILSIMKDLDMEDIPHLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEE----LINKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E     L++KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVEDFTPTQTPYTLISAKSEDSRENLQALLLDKIKEIFEAFTLRVPFS-KSYKIH 375


>gi|121605951|ref|YP_983280.1| GTP-binding protein Era [Polaromonas naphthalenivorans CJ2]
 gi|120594920|gb|ABM38359.1| GTP-binding protein Era [Polaromonas naphthalenivorans CJ2]
          Length = 357

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + V+I +    TTR  +T             DT G +   
Sbjct: 72  IAIVGKPNVGKSTLLNALVGQKVSITSRKAQTTRHRITGMRTRAATQFVFVDTPGFQTRH 131

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYST 334
                  + RT +  V + DLI+ + E       ++K     P+    I +  K DL   
Sbjct: 132 GNALNRSLNRTVVGAVNDVDLIVFVVEAGQFNLADAKVLALLPEKTPAILLANKFDLIHR 191

Query: 335 YTE 337
             E
Sbjct: 192 RAE 194


>gi|325694698|gb|EGD36604.1| GTP-binding protein HflX [Streptococcus sanguinis SK150]
          Length = 412

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T +++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKSQYEADELFATL-DATTKNINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLV 282


>gi|330840361|ref|XP_003292185.1| hypothetical protein DICPUDRAFT_82812 [Dictyostelium purpureum]
 gi|325077573|gb|EGC31276.1| hypothetical protein DICPUDRAFT_82812 [Dictyostelium purpureum]
          Length = 598

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + I+G+ N GKSSL N+L +     V   PG T+    + LD     VK+ D+ 
Sbjct: 259 IKTSVSVGIIGYPNVGKSSLINSLKRTRSVGVGATPGFTKIAQEVHLDKN---VKLLDSP 315

Query: 276 GIRETDDIVEKEGIKRTFLEVEN-ADLILLLKEI 308
           GI      V++  I R  +++E  AD I  ++ I
Sbjct: 316 GIVPVKGNVDENIILRNVVKLEKVADPIAPVEAI 349


>gi|324991626|gb|EGC23559.1| GTP-binding protein HflX [Streptococcus sanguinis SK353]
 gi|325687692|gb|EGD29713.1| GTP-binding protein HflX [Streptococcus sanguinis SK72]
 gi|332360957|gb|EGJ38761.1| GTP-binding protein HflX [Streptococcus sanguinis SK1056]
          Length = 412

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T +++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKSQYEADELFATL-DATTKNINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLV 282


>gi|73662832|ref|YP_301613.1| ribosomal biogenesis GTPase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495347|dbj|BAE18668.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 286

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LA K +A   + PG T+    I +   G  +++ DT GI
Sbjct: 122 RAMIVGIPNVGKSTLINKLANKSIAKTGNTPGVTKQQQWIKV---GQSLQLLDTPGI 175


>gi|37527215|ref|NP_930559.1| GTP-binding protein Era [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786649|emb|CAE15713.1| GTP-binding protein era [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 302

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  + + +  EG Y +   DT G+   
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRI-MGIHTEGAYQIIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKR 291
             I EK  I R
Sbjct: 68  --IEEKRAINR 76


>gi|294500848|ref|YP_003564548.1| GTP-binding protein HflX [Bacillus megaterium QM B1551]
 gi|294350785|gb|ADE71114.1| GTP-binding protein HflX [Bacillus megaterium QM B1551]
          Length = 416

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVL 258
           + SH  + +      + Y+I I+G++NAGKS++FN L +  +     +   +  TTR   
Sbjct: 180 VVSHRERYRERRKRNHVYQIAIVGYTNAGKSTIFNRLTEAGIFEENQLFATLDPTTRQYT 239

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
                  G    ++DT G  +          + T  EV  ADL+L
Sbjct: 240 LPS----GLTALLTDTVGFIQDLPTTLVAAFRSTLEEVTEADLVL 280


>gi|292489089|ref|YP_003531976.1| GTP-binding protein Era [Erwinia amylovora CFBP1430]
 gi|292900213|ref|YP_003539582.1| GTP-binding protein [Erwinia amylovora ATCC 49946]
 gi|291200061|emb|CBJ47187.1| GTP-binding protein [Erwinia amylovora ATCC 49946]
 gi|291554523|emb|CBA22092.1| GTP-binding protein Era [Erwinia amylovora CFBP1430]
 gi|312173247|emb|CBX81502.1| GTP-binding protein Era [Erwinia amylovora ATCC BAA-2158]
          Length = 301

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 37/203 (18%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVK 270
           + E+I +   I I+G  N GKS+L N L  + V+I +  P TTR  + + +  EG Y   
Sbjct: 1   MSELIPHCGFIAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRI-MGIHTEGQYQAI 59

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
             DT G+     + EK  I R             L    +   I   + + F+  GT+  
Sbjct: 60  YVDTPGLH----MEEKRAINR-------------LMNRAASSSIGDVEMVIFVVEGTR-- 100

Query: 331 LYSTYTEEYDHLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
               +T + + +++      +  L  INK+ +I ++K   LP        HL  L Q + 
Sbjct: 101 ----WTADDEMVLNKLKDGKVPVLLAINKVDNI-TDKSILLP--------HLQFLGQQMN 147

Query: 389 YLEMASLN-EKDCGLDIIAENLR 410
           ++++  ++ EK   +D IA  +R
Sbjct: 148 FMDVVPISAEKGSNVDTIASIVR 170


>gi|257056737|ref|YP_003134569.1| GTP-binding proten HflX [Saccharomonospora viridis DSM 43017]
 gi|256586609|gb|ACU97742.1| GTP-binding proten HflX [Saccharomonospora viridis DSM 43017]
          Length = 482

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 39/184 (21%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + ++G++NAGKSS+ NA+    V    A+   +  TTR   T D    G +  ++DT G 
Sbjct: 257 VALVGYTNAGKSSILNAVTGAGVLVEDALFATLDPTTRRTETPD----GRVYTLTDTVGF 312

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFP 317
           +R     +  +  + T  E  +ADL+L                   +L EI  K+    P
Sbjct: 313 VRHLPHQL-VDAFRSTLDEAADADLLLHVVDGAAAAPEDQVVAVREVLAEIAEKRAEPLP 371

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLP 370
             +  I    K+D+    T            ++S+ +G+G++ L+++I + L      + 
Sbjct: 372 PELVVI---NKADIADEMTLARLRNLLPDAVVVSAHSGQGIDTLLSEIAARLPKPETVVD 428

Query: 371 FSIP 374
             +P
Sbjct: 429 VVVP 432


>gi|169335678|ref|ZP_02862871.1| hypothetical protein ANASTE_02098 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258416|gb|EDS72382.1| hypothetical protein ANASTE_02098 [Anaerofustis stercorihominis DSM
           17244]
          Length = 669

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 12/85 (14%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VKISDTAGIR 278
           ++G+ N GK++LFNAL   + A V + PG T D        EG +     + + D  GI 
Sbjct: 7   LVGNQNCGKTTLFNALTGSN-AHVGNFPGVTVD------KKEGPIKGHENINLVDLPGIY 59

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
                  +E + R FL  +  DLI+
Sbjct: 60  SLSPYTSEEVVTRDFLMKDKPDLII 84


>gi|32266828|ref|NP_860860.1| ribosome biogenesis GTP-binding protein YsxC [Helicobacter
           hepaticus ATCC 51449]
 gi|81665602|sp|Q7VGJ2|ENGB_HELHP RecName: Full=Probable GTP-binding protein EngB
 gi|32262880|gb|AAP77926.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 222

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           N  +IV LG SN GKS+L N L  K +A  +  PG T+
Sbjct: 23  NASEIVFLGRSNVGKSTLINTLLNKPLAKSSSTPGKTQ 60


>gi|330970941|gb|EGH71007.1| GTP-binding protein, HSR1-related protein [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 462

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  +V++ DT G+
Sbjct: 11  KLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVDGQAVVELYDTPGL 69


>gi|329768913|ref|ZP_08260340.1| ribosome biogenesis GTP-binding protein YlqF [Gemella sanguinis
           M325]
 gi|328836630|gb|EGF86288.1| ribosome biogenesis GTP-binding protein YlqF [Gemella sanguinis
           M325]
          Length = 292

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           I+  +++G     IR+    +++G  N GKS+  N L KK+VA   + PG T+    + L
Sbjct: 108 IARQVAKGIKPRAIRS----MVIGVPNVGKSTFINKLIKKNVANTANKPGVTKKQQWLKL 163

Query: 263 DLEGYLVKISDTAGI 277
           + +   +++ DT GI
Sbjct: 164 NKD---IELLDTPGI 175


>gi|322385662|ref|ZP_08059306.1| GTP-binding protein HflX [Streptococcus cristatus ATCC 51100]
 gi|321270400|gb|EFX53316.1| GTP-binding protein HflX [Streptococcus cristatus ATCC 51100]
          Length = 412

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T +++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKSQYEADELFATL-DATTKNINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLV 282


>gi|237815534|ref|ZP_04594531.1| GTP-binding proten HflX [Brucella abortus str. 2308 A]
 gi|237788832|gb|EEP63043.1| GTP-binding proten HflX [Brucella abortus str. 2308 A]
          Length = 505

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 268 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLRRIRLPHGETVILSDTVGFISN 326

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
                    + T  EV  ADLIL +++I+     +  ++++ I  G
Sbjct: 327 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAG 372


>gi|58338157|ref|YP_194742.1| ABC transporter ATPase protein [Lactobacillus acidophilus NCFM]
 gi|227902662|ref|ZP_04020467.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Lactobacillus acidophilus ATCC 4796]
 gi|58255474|gb|AAV43711.1| ABC transporter ATPase protein [Lactobacillus acidophilus NCFM]
 gi|227869568|gb|EEJ76989.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Lactobacillus acidophilus ATCC 4796]
          Length = 233

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 16/77 (20%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N  ++   DIS  +++G+L         ++ILG S AGKS+L N L   +       P T
Sbjct: 17  NTTIYANKDISFSVNKGEL---------VIILGSSGAGKSTLLNILGGME-------PNT 60

Query: 254 TRDVLTIDLDLEGYLVK 270
           + DV+    ++ GY  K
Sbjct: 61  SGDVIVAGQNIAGYNAK 77


>gi|328848900|gb|EGF98093.1| hypothetical protein MELLADRAFT_96161 [Melampsora larici-populina
           98AG31]
          Length = 768

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    YL+   D  G
Sbjct: 337 RKQISVGFIGYPNVGKSSIINTLKKKKVCNVAPIPGETKIWQYITLMRRIYLI---DCPG 393

Query: 277 I 277
           I
Sbjct: 394 I 394


>gi|225570790|ref|ZP_03779813.1| hypothetical protein CLOHYLEM_06893 [Clostridium hylemonae DSM
           15053]
 gi|225160252|gb|EEG72871.1| hypothetical protein CLOHYLEM_06893 [Clostridium hylemonae DSM
           15053]
          Length = 424

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 22/162 (13%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAG-IRETD 281
           ++G++NAGKS+L NAL   D+ +  D    T D  T +L L     V ++DT G IR+  
Sbjct: 203 VVGYTNAGKSTLLNALTGADI-LAEDKLFATLDPTTRELKLPSKQSVLLTDTVGFIRKLP 261

Query: 282 DIVEKEGIKRTFLEVENADLILLL-----KEINSKKEISFP-------KNIDFIFIGTKS 329
             +  E  + T  E + AD+IL +      +++ +  I +        K+   I +  K 
Sbjct: 262 HHL-IEAFRSTLEEAKYADMILHVVDTANPQMDEQMHIVYETLRSLGVKDKPVITVFNKQ 320

Query: 330 D------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           D          +  +Y   IS+ T EGL+EL   I+++L  +
Sbjct: 321 DKEGAQRTVRDFQADYTVRISAKTTEGLDELKEMIEAVLRGQ 362


>gi|157863947|ref|XP_001687523.1| GTPase [Leishmania major strain Friedlin]
 gi|68223734|emb|CAJ01966.1| putative GTPase [Leishmania major strain Friedlin]
          Length = 627

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 198 FLKNDISSHISQ-GKLGEIIRNGYK-------IVILGHSNAGKSSLFNALAKKDVAIVTD 249
           F K ++ S + Q  +L  +   G K       + ++G+ N GKSSL N L +K V  V  
Sbjct: 289 FGKGNVISLLRQFARLHNVTHRGSKRTKTPISVGVIGYPNVGKSSLINTLRRKSVCKVAP 348

Query: 250 IPGTTR 255
           IPG T+
Sbjct: 349 IPGETK 354


>gi|66047959|ref|YP_237800.1| GTP-binding protein, HSR1-related [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258666|gb|AAY39762.1| GTP-binding protein, HSR1-related [Pseudomonas syringae pv.
           syringae B728a]
          Length = 462

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277
           K+ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  +V++ DT G+
Sbjct: 11  KLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVDGQAVVELYDTPGL 69


>gi|326333217|ref|ZP_08199464.1| GTP-binding protein HflX [Nocardioidaceae bacterium Broad-1]
 gi|325948861|gb|EGD40954.1| GTP-binding protein HflX [Nocardioidaceae bacterium Broad-1]
          Length = 494

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + I G++NAGKSSL N L    V    A+   +  TTR   T D    G +  +SDT G 
Sbjct: 278 VAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTTRRTTTED----GRVYTMSDTVGF 333

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
           +R     +  E  + T  EV +ADL++
Sbjct: 334 VRHLPHQL-VEAFRSTLEEVADADLVV 359


>gi|299067272|emb|CBJ38469.1| GTP-binding protein hflX, GTPase activity [Ralstonia solanacearum
           CMR15]
          Length = 417

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           + + + ++G++NAGKS+LFNAL K        +  T  D  +  L LEG   V +SDT G
Sbjct: 200 DAFSVSLVGYTNAGKSTLFNALTKARAYAANQLFATL-DTTSRRLYLEGLGNVVLSDTVG 258


>gi|242036437|ref|XP_002465613.1| hypothetical protein SORBIDRAFT_01g042170 [Sorghum bicolor]
 gi|241919467|gb|EER92611.1| hypothetical protein SORBIDRAFT_01g042170 [Sorghum bicolor]
          Length = 310

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 223 VILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            +LG SN GKSSL NAL  +K+ A+ +  PG T+ +    ++   YLV +
Sbjct: 131 AVLGRSNVGKSSLINALTRRKEAALTSKKPGKTQTINHFLVNKSWYLVDL 180


>gi|222148082|ref|YP_002549039.1| GTP-binding protein Era [Agrobacterium vitis S4]
 gi|221735070|gb|ACM36033.1| GTP-binding protein Era [Agrobacterium vitis S4]
          Length = 327

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N      V+IV+    TTR V+          +   DT GI +  
Sbjct: 37  VALIGPTNAGKSTLVNRFVGAKVSIVSHKVQTTRAVMRGIAIHNNAQIVFMDTPGIFKPR 96

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
             +++  +   +   ++AD+ILLL
Sbjct: 97  RKLDRAMVTSAWGGAKDADVILLL 120


>gi|212715540|ref|ZP_03323668.1| hypothetical protein BIFCAT_00438 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660907|gb|EEB21482.1| hypothetical protein BIFCAT_00438 [Bifidobacterium catenulatum DSM
           16992]
          Length = 496

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 22/206 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G++NAGKSSL N L      +   +  T    +      +G      DT G     
Sbjct: 278 VAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRARAKDGRRYAYVDTVGFVRRL 337

Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSK----KEISFPKNIDFIFIGTK 328
                E  K T  EV  ADLI+ +          +I++      +I   + I  I +  K
Sbjct: 338 PTQLIEAFKSTLEEVAEADLIVHVVDGSHPDPFSQIDAVDDVLADIDGVETIPTIIVFNK 397

Query: 329 SDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           +D     T E         +++S+F+G+G++EL  +++S+L      +   +P     L 
Sbjct: 398 ADRMDEATRERIEALMPEAYIVSAFSGDGVDELRMQVESMLPAPNVHVEALLPYTAGSL- 456

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAE 407
            +S+   Y ++ ++  +D G+ + AE
Sbjct: 457 -VSRVREYGKVINVEYRDDGMMLEAE 481


>gi|167037414|ref|YP_001664992.1| small GTP-binding protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115827|ref|YP_004185986.1| GTP-binding proten HflX [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856248|gb|ABY94656.1| small GTP-binding protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928918|gb|ADV79603.1| GTP-binding proten HflX [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 413

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 14/96 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAI-----VTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I I+G++NAGKS+L NAL   +V +      T  P   R VL       G  V + DT G
Sbjct: 201 IAIVGYTNAGKSTLLNALTNAEVYVEDKLFATLDPTARRLVLP-----SGREVILIDTVG 255

Query: 277 -IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            IR+   D+V  E  K T  E + ADL+L + ++ S
Sbjct: 256 FIRKLPHDLV--EAFKSTLEEAKYADLLLHVIDVTS 289


>gi|307104847|gb|EFN53099.1| hypothetical protein CHLNCDRAFT_137429 [Chlorella variabilis]
          Length = 609

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 14/101 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVA-------IVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           ++ I+G++NAGKSSL +AL+K   A       +   +  T R V+   L   G  V +SD
Sbjct: 212 QVAIVGYTNAGKSSLLSALSKCGEAEAGVEDKLFATLDPTLRRVM---LPGSGRDVVLSD 268

Query: 274 TAGIRETDDIVEK--EGIKRTFLEVENADLILLLKEINSKK 312
           T G     D+  +  E  + T  EV  ADL+L + + +S +
Sbjct: 269 TVGF--ISDLPTQLIEAFQATLEEVTEADLLLHVLDASSPQ 307


>gi|302683048|ref|XP_003031205.1| hypothetical protein SCHCODRAFT_68287 [Schizophyllum commune H4-8]
 gi|300104897|gb|EFI96302.1| hypothetical protein SCHCODRAFT_68287 [Schizophyllum commune H4-8]
          Length = 518

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 12/85 (14%)

Query: 200 KNDISSHISQGKLGEIIRNGYK-------IVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +N++SS  S   L   +   YK       I ++G+ N GKSSL N L +     V   PG
Sbjct: 125 RNNLSSTTSPALLK--LLKAYKPKSGSVTIGVVGYPNVGKSSLINTLKRSKACAVASQPG 182

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGI 277
            T+++ ++ L+     ++I D+ G+
Sbjct: 183 HTKELQSVQLE---RGIRIVDSPGV 204


>gi|195151599|ref|XP_002016726.1| GL21923 [Drosophila persimilis]
 gi|194111783|gb|EDW33826.1| GL21923 [Drosophila persimilis]
          Length = 583

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L +    +V   PG T+ +  ++LD +   +K+ D  
Sbjct: 264 IKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKAMQEVELDSK---IKLIDCP 320

Query: 276 GI 277
           GI
Sbjct: 321 GI 322


>gi|171780162|ref|ZP_02921066.1| hypothetical protein STRINF_01950 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281510|gb|EDT46945.1| hypothetical protein STRINF_01950 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 298

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 22/195 (11%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT
Sbjct: 1   MFKSGF-VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDTEQIVFIDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIG 326
            GI +    +    ++  +  +   D +L +   + K+        E     NI  I + 
Sbjct: 60  PGIHKPKTALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMIIERLKAANIPVILVI 119

Query: 327 TKSDLY--STYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D        E+ D             IS+  G  +E+L+N +K  L   F+  P   
Sbjct: 120 NKIDKVHPDQLLEQIDDFRSQMDFKEIVPISALQGNNVEKLLNILKDNLEEGFQYFPEDQ 179

Query: 374 PSHKRHLYHLSQTVR 388
            +     + +S+ +R
Sbjct: 180 ITDHPERFLVSEMIR 194


>gi|149926261|ref|ZP_01914523.1| GTP-binding protein HflX [Limnobacter sp. MED105]
 gi|149825079|gb|EDM84291.1| GTP-binding protein HflX [Limnobacter sp. MED105]
          Length = 373

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 6/94 (6%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAG-I 277
           + + I+G++NAGKS+LFNA+A  D A   D    T D  T  + L   + + +SDT G I
Sbjct: 191 FTVAIVGYTNAGKSTLFNAIA-SDKAYAADQLFATLDTTTRRVWLAPKVDMALSDTVGFI 249

Query: 278 RE-TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           R+ +  +V  +  K T     +AD++L + +++S
Sbjct: 250 RDLSHSLV--DAFKATLESAVHADVLLHVVDVSS 281


>gi|116514796|ref|YP_813702.1| GTPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|116094111|gb|ABJ59264.1| GTPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 426

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TID-----LDLEGYLVKISD 273
           K+ ++G++NAGKS+  N L K   A   D     +D+L  T+D     +DL+G+   +SD
Sbjct: 206 KVALVGYTNAGKSTTMNGLLKAFGAGNEDKQVMAKDMLFATLDTSVRRIDLDGFSFILSD 265

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           T G          +  K T  E ++ADL++
Sbjct: 266 TVGFVSKLPHKLVDSFKATLQEAKDADLLI 295


>gi|71736746|ref|YP_272563.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|119369231|sp|Q48PV6|ENGB_PSE14 RecName: Full=Probable GTP-binding protein EngB
 gi|71557299|gb|AAZ36510.1| GTP-binding protein XF1430 [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320322197|gb|EFW78293.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320331848|gb|EFW87786.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330872974|gb|EGH07123.1| GTP-binding protein YsxC [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 211

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ N IL L    +  +S  K+ +   + G+++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QLKNPILGLCQQATFMLSAAKVDQCPDDEGFEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTR--DVLTID-----LDLEGY 267
            PG T+  +   +D     +DL GY
Sbjct: 62  TPGRTQLLNFFGLDEDRRLVDLPGY 86


>gi|323939172|gb|EGB35386.1| hypothetical protein ERDG_04269 [Escherichia coli E482]
          Length = 294

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHGVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            + G TR    + L      + + D  GI ET  
Sbjct: 68  PLNGCTRQAHRLTLQFGERRMTLVDLPGIGETPQ 101


>gi|310815322|ref|YP_003963286.1| kinase [Ketogulonicigenium vulgare Y25]
 gi|308754057|gb|ADO41986.1| kinase [Ketogulonicigenium vulgare Y25]
          Length = 347

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 43/176 (24%)

Query: 222 IVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           + +LG + AGKSSL  +L    DVAI       T+    +D   +  +++  DT G+ E 
Sbjct: 20  LWLLGKTGAGKSSLIASLTGLSDVAIGNGFQSCTKTSRALDFPPDAPVMRFMDTRGLGEV 79

Query: 280 ----TDDIVEKEGIKRTFLEVENAD------LILLLKEINSKKEISFPKNIDFIFIGTKS 329
                +DI    G+    L V   D      ++ +L+ +  K  +        + + T  
Sbjct: 80  GYDPAEDIAALAGVTHMILAVARLDDPIQGEVLDVLRRVGRKAPV--------LLVATAG 131

Query: 330 DLYS-----------------------TYTEEYDHLISSFTGEGLEELINKIKSIL 362
           DL                          Y E        +T EG+  L++K+ ++L
Sbjct: 132 DLLGPEAHARSLRLLRQDYEEAVGRALPYVELGHTPAGGYTAEGMNALVDKLSTLL 187


>gi|260584202|ref|ZP_05851950.1| ribosome biogenesis GTPase YqeH [Granulicatella elegans ATCC
           700633]
 gi|260158828|gb|EEW93896.1| ribosome biogenesis GTPase YqeH [Granulicatella elegans ATCC
           700633]
          Length = 371

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 19/116 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G    ++G +N GKS+L N L +     KDV   +  PGTT   + I  D +  L+  
Sbjct: 164 RQGKDAYVVGVTNVGKSTLINKLIQSIGGTKDVITTSQFPGTTLGQIYIPFDEKSSLI-- 221

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-FIFIG 326
            DT GI     I         +L  +    +L  KE+  K   +F  N +  IFIG
Sbjct: 222 -DTPGIIHRHQIAH-------YLAEKEVKKVLPQKELQPK---TFQLNAEQTIFIG 266


>gi|237797956|ref|ZP_04586417.1| GTP-binding protein YsxC [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020807|gb|EGI00864.1| GTP-binding protein YsxC [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 211

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ N IL L    +  +S  K+ +   + G+++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QLKNPILGLCQQATFMLSAAKVDQCPDDEGFEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTR--DVLTID-----LDLEGY 267
            PG T+  +   +D     +DL GY
Sbjct: 62  TPGRTQLLNFFGLDEDRRLVDLPGY 86


>gi|225551742|ref|ZP_03772685.1| GTP-binding protein [Borrelia sp. SV1]
 gi|225371537|gb|EEH00964.1| GTP-binding protein [Borrelia sp. SV1]
          Length = 279

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           K++I+G  N GKSS+ N L+ K  A V + PG T+++  + ++ E   + + D  GI
Sbjct: 119 KVLIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKINEE---INLFDMPGI 172


>gi|298492787|ref|YP_003722964.1| small GTP-binding protein ['Nostoc azollae' 0708]
 gi|298234705|gb|ADI65841.1| small GTP-binding protein ['Nostoc azollae' 0708]
          Length = 506

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 20/213 (9%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK--ISDT 274
           R   ++V+ G  ++GK+SL NA+  + V  V    GTT+   T  L L+G   K  I+DT
Sbjct: 129 RGEIQVVVFGTGSSGKTSLVNAIIGRMVGEVNAPMGTTQVGETYCLRLKGLERKILITDT 188

Query: 275 AGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSKKEISFP-KNIDFI-----FIGT 327
            GI E      E+E + R       ADL+L + + + ++    P K +  I      I  
Sbjct: 189 PGILEAGVAGTEREQLARAL--ATEADLLLFVVDNDLRRSEYEPLKGLAEIGKRSLLILN 246

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEELI--NKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           K+DL   Y ++    I S   + + E I  N + +I +N     P  + + +      + 
Sbjct: 247 KTDL---YIQDDQEAILSKLRQRVREFIASNDVVAIAAN---PQPAKLETGETFQAE-AD 299

Query: 386 TVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
            V  L   +   +  G D++A+N+ L S+ LG+
Sbjct: 300 IVPLLRRMACVLRAEGEDLVADNILLQSLRLGE 332


>gi|198453139|ref|XP_002137602.1| GA26447 [Drosophila pseudoobscura pseudoobscura]
 gi|198132227|gb|EDY68160.1| GA26447 [Drosophila pseudoobscura pseudoobscura]
          Length = 583

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L +    +V   PG T+ +  ++LD +   +K+ D  
Sbjct: 264 IKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKAMQEVELDSK---IKLIDCP 320

Query: 276 GI 277
           GI
Sbjct: 321 GI 322


>gi|104774669|ref|YP_619649.1| putative GTP-binding protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423750|emb|CAI98750.1| Putative GTP-binding protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|325126486|gb|ADY85816.1| GTP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 426

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TID-----LDLEGYLVKISD 273
           K+ ++G++NAGKS+  N L K   A   D     +D+L  T+D     +DL+G+   +SD
Sbjct: 206 KVALVGYTNAGKSTTMNGLLKAFGAGNEDKQVMAKDMLFATLDTSVRRIDLDGFSFILSD 265

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           T G          +  K T  E ++ADL++
Sbjct: 266 TVGFVSKLPHKLVDSFKATLQEAKDADLLI 295


>gi|14521593|ref|NP_127069.1| GTP-binding protein [Pyrococcus abyssi GE5]
 gi|5458812|emb|CAB50299.1| GTP-binding protein homolog [Pyrococcus abyssi GE5]
          Length = 355

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I ++  K+ ++G+ N GKS++ N L  K       IPG T+    I L    +L+   DT
Sbjct: 99  IDKDKVKVALIGYPNVGKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLL---DT 155

Query: 275 AGIRETDD 282
            G+   DD
Sbjct: 156 PGVVPIDD 163


>gi|71667159|ref|XP_820531.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70885880|gb|EAN98680.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 380

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           K+ +LG  N+GK+SL NAL+   +  V++  G+T+D +     +    + + DT G+
Sbjct: 92  KLALLGPQNSGKTSLLNALSLSHIGAVSNRSGSTKDWIKGVATVHNTQLVLLDTPGV 148


>gi|330874573|gb|EGH08722.1| GTP-binding protein YsxC [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330965635|gb|EGH65895.1| GTP-binding protein YsxC [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 211

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ N IL L    +  +S  K+ +   + G+++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QLKNPILGLCQQATFMLSAAKVDQCPDDEGFEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTR--DVLTID-----LDLEGY 267
            PG T+  +   +D     +DL GY
Sbjct: 62  TPGRTQLLNFFGLDDDRRLVDLPGY 86


>gi|225848777|ref|YP_002728941.1| GTP-binding protein HflX [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644205|gb|ACN99255.1| GTP-binding protein HflX [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 369

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 3/98 (3%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT--TRDVLTIDLDLE 265
            Q K  E   N   + ++G++NAGKSSL N L K+D  I   +  T  T+       D+ 
Sbjct: 182 QQRKTREDNPNILNVALVGYTNAGKSSLLNRLTKRDTYISDQLFATLDTKTSFIHFPDIN 241

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
             ++ I+DT G  E       +    T  E E ADLIL
Sbjct: 242 KRVI-ITDTVGFVEDMPQEIMDAFMTTLKETEEADLIL 278


>gi|170116059|ref|XP_001889222.1| pleiotropic drug resistance ABC transporter [Laccaria bicolor
           S238N-H82]
 gi|164635863|gb|EDR00165.1| pleiotropic drug resistance ABC transporter [Laccaria bicolor
           S238N-H82]
          Length = 1412

 Score = 37.4 bits (85), Expect = 5.2,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 14/91 (15%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK-DVAIVTDIPG 252
           N++  L +D+S +++ GKL           ++G S AGK++L N LA++ DV +VT    
Sbjct: 793 NEVRQLLSDVSGYVAPGKL---------TALMGESGAGKTTLLNVLAQRVDVGVVTGDKF 843

Query: 253 TTRDVLTIDLDLE-GYLVKISD---TAGIRE 279
                L  D   + GY  ++     TA +RE
Sbjct: 844 VNGQALPADFQSQSGYCQQMDTHVPTATVRE 874


>gi|153009537|ref|YP_001370752.1| GTP-binding protein HSR1-like [Ochrobactrum anthropi ATCC 49188]
 gi|151561425|gb|ABS14923.1| GTP-binding protein HSR1-related [Ochrobactrum anthropi ATCC 49188]
          Length = 472

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 6/173 (3%)

Query: 159 GQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIR 217
           G+ +   TH+              + Q  + + +L D IL +K ++ + +    L    R
Sbjct: 168 GRLVRSWTHLERQRGGGGFLGGPGETQIEADRRLLQDKILKIKRELETVVRTRTLHRQKR 227

Query: 218 NGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISD 273
                  + ++G++NAGKS+LFN +   +V +  D+   T D     + L  G  V +SD
Sbjct: 228 RKVPHPIVALVGYTNAGKSTLFNRMTGAEV-LAEDMLFATLDPTLRRIRLPHGETVILSD 286

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
           T G             + T  EV  ADLIL +++I+     +  ++++ I  G
Sbjct: 287 TVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVESILSG 339


>gi|327463247|gb|EGF09568.1| GTP-binding protein HflX [Streptococcus sanguinis SK1]
          Length = 412

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T +++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKSQYEADELFATL-DATTKNINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESKNVDLLV 282


>gi|262282441|ref|ZP_06060209.1| GTP-binding protein HflX [Streptococcus sp. 2_1_36FAA]
 gi|262261732|gb|EEY80430.1| GTP-binding protein HflX [Streptococcus sp. 2_1_36FAA]
          Length = 412

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      ++  T  D  T +++L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNCLTSKSQYEADELFATL-DATTKNINLSGQLNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E  N DL++
Sbjct: 258 QDLPTELVSSFKSTLEESRNVDLLV 282


>gi|254440407|ref|ZP_05053901.1| GTP-binding protein Era [Octadecabacter antarcticus 307]
 gi|198255853|gb|EDY80167.1| GTP-binding protein Era [Octadecabacter antarcticus 307]
          Length = 313

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISD 273
           + R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +  + ++ +  +V + D
Sbjct: 13  VQRAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAIEGDSQIVFV-D 70

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           T G+ +    +++  +   +  V ++D+++L+ E
Sbjct: 71  TPGLFQPKRRLDRAMVAAAWSGVSDSDVVVLMIE 104


>gi|119897224|ref|YP_932437.1| GTP-binding subunit of protease specific for phage lambda [Azoarcus
           sp. BH72]
 gi|119669637|emb|CAL93550.1| probable GTP-binding subunit of protease specific for phage lambda
           [Azoarcus sp. BH72]
          Length = 379

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 23/158 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           +   + ++G++NAGKS+LFNAL K   A   D    T D  +  L + G  V +SDT G 
Sbjct: 196 DALTVSLVGYTNAGKSTLFNALTKAG-AYAADQLFATLDTTSRRLFVGGGNVVLSDTVGF 254

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL------------LLKEINSKKEISFPKNIDFIF 324
           IR+    +     + T  E  +AD++L             ++ +N   E      +  I 
Sbjct: 255 IRDLPHAL-VAAFEATLEETAHADVLLHVVDAASEDRDAQIEAVNRVLEEIGAAEVPQIL 313

Query: 325 IGTKSDL--YSTYTEEYDH------LISSFTGEGLEEL 354
           +  K DL   +   E  D        +S+ TGEGLE L
Sbjct: 314 VWNKIDLTHAAPAVERGDCDRIRRVFLSARTGEGLELL 351


>gi|167040081|ref|YP_001663066.1| small GTP-binding protein [Thermoanaerobacter sp. X514]
 gi|256752602|ref|ZP_05493456.1| GTP-binding proten HflX [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914164|ref|ZP_07131480.1| GTP-binding proten HflX [Thermoanaerobacter sp. X561]
 gi|307724600|ref|YP_003904351.1| GTP-binding proten HflX [Thermoanaerobacter sp. X513]
 gi|166854321|gb|ABY92730.1| small GTP-binding protein [Thermoanaerobacter sp. X514]
 gi|256748540|gb|EEU61590.1| GTP-binding proten HflX [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889099|gb|EFK84245.1| GTP-binding proten HflX [Thermoanaerobacter sp. X561]
 gi|307581661|gb|ADN55060.1| GTP-binding proten HflX [Thermoanaerobacter sp. X513]
          Length = 413

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 14/96 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAI-----VTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           I I+G++NAGKS+L NAL   +V +      T  P   R VL       G  V + DT G
Sbjct: 201 IAIVGYTNAGKSTLLNALTNAEVYVEDKLFATLDPTARRLVLP-----SGREVILIDTVG 255

Query: 277 -IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            IR+   D+V  E  K T  E + ADL+L + ++ S
Sbjct: 256 FIRKLPHDLV--EAFKSTLEEAKYADLLLHVIDVTS 289


>gi|319898998|ref|YP_004159091.1| GTP-binding protein HflX [Bartonella clarridgeiae 73]
 gi|319402962|emb|CBI76513.1| GTP-binding protein HflX [Bartonella clarridgeiae 73]
          Length = 444

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I ++G++NAGKS+LFN L+  +V +  D+   T D     + L  G  V +SDT G    
Sbjct: 221 IALVGYTNAGKSTLFNHLSDSNV-LAEDMLFATLDPTLRKIVLPHGQKVLLSDTVGFISN 279

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320
                    + T  EV  ADLIL +++++     +  +++
Sbjct: 280 LPTHLIAAFRATLEEVIEADLILHVRDVSDPDHYAHAQDV 319


>gi|262203045|ref|YP_003274253.1| GTP-binding protein Era [Gordonia bronchialis DSM 43247]
 gi|262086392|gb|ACY22360.1| GTP-binding protein Era [Gordonia bronchialis DSM 43247]
          Length = 302

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI ++ P TTR  +   ++     + + DT G
Sbjct: 5   RSGF-VCFVGRPNTGKSTLTNALVGEKIAITSNRPQTTRHAIRGIVNRPDAQLILVDTPG 63

Query: 277 IRETDDIVEK---EGIKRTFLEVE 297
           +     ++ +   + ++ TF EV+
Sbjct: 64  LHRPRTLLGQRLNDLVQDTFAEVD 87


>gi|221117412|ref|XP_002162571.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 874

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 28/178 (15%)

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL----DFSEEED 183
            +S+ + ++S    Q    ++   GE+  L GQ  D+      F++  +    D +E++ 
Sbjct: 692 GQSVTNNMTSSANQQSTFKLQLQDGEIRRLMGQQFDQSDCTPEFLKIRITEASDAAEKQH 751

Query: 184 VQNFSSKEVLNDILFLK----------NDISSHISQGKLGEI--IRNGYKIVILGHSNAG 231
           ++ ++S  + + +L++           N++ S + +  L  I   +     V++G S +G
Sbjct: 752 LKLYTSTYIGDILLYVNPYKKLEKHDSNELYSVMCKRVLEHIPKTQTSQCFVVMGESGSG 811

Query: 232 KSSLFNALAKKDVAIVTDIPGTTR-----------DVLTIDLDLEGYLVKISDTAGIR 278
           K+ + N+L KK V ++    GT +             L I       +VK+SD AGI+
Sbjct: 812 KTEVVNSLVKK-VDLILQPFGTAQTSLNDQSTRFGKYLQICFSPNLSVVKVSDVAGIK 868


>gi|242801241|ref|XP_002483721.1| nucleolar GTPase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218717066|gb|EED16487.1| nucleolar GTPase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 563

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L  K V  V  IPG T+    I L    YL+       
Sbjct: 320 RKQISVGFIGYPNTGKSSIINTLRNKKVCTVAPIPGETKVWQYITLMKRIYLIDCPGVVP 379

Query: 277 IRETDDIVEKEGIKRTFLEVEN 298
             + D   E++ + R  + VEN
Sbjct: 380 PNQND--TEEDILLRGVVRVEN 399


>gi|224096322|ref|XP_002196977.1| PREDICTED: similar to putative RAS-like estrogen-regulated growth
           inhibitor [Taeniopygia guttata]
 gi|197127572|gb|ACH44070.1| putative RAS-like estrogen-regulated growth inhibitor variant 2
           [Taeniopygia guttata]
          Length = 199

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 66/152 (43%), Gaps = 27/152 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           K+ I G +  GKS+L      K      D  +  T R   TID ++    ++I DTAG  
Sbjct: 8   KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVS--MEILDTAG-- 63

Query: 279 ETDDIVEKEGIKRT---FLEV----ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
             +D ++KEG  R    F+ V    +      +L   N   E+  PKN+  I +G K+DL
Sbjct: 64  -QEDAIQKEGHVRWGEGFVLVYDITDRGSFEEMLPLKNLLDEVKKPKNVTLILVGNKADL 122

Query: 332 ---YSTYTEEYDHL----------ISSFTGEG 350
                  TEE + L           S+ TGEG
Sbjct: 123 DHSRQVSTEEGEKLATELACAFYECSACTGEG 154


>gi|49474155|ref|YP_032197.1| GTP-binding protein hflX [Bartonella quintana str. Toulouse]
 gi|49239659|emb|CAF26030.1| GTP-binding protein hflX [Bartonella quintana str. Toulouse]
          Length = 447

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 7/126 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++N GKS+LFN L+  D A+  D+   T D +   + L  G  + +SDT G    
Sbjct: 220 VALVGYTNTGKSTLFNRLSGAD-ALEKDMLFATLDPIVRKVILPHGKTILLSDTVGFISN 278

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
                    + T  EV  ADLIL +++++     +  +++  +  G   D     T++ +
Sbjct: 279 LPTNLIAAFRATLEEVVEADLILHVRDMSDLDHRAHAQDVLEVLSGLGID-----TDDTE 333

Query: 341 HLISSF 346
           H+I  +
Sbjct: 334 HIIEVW 339


>gi|84390105|ref|ZP_00991367.1| GTP-binding protein Era [Vibrio splendidus 12B01]
 gi|86146358|ref|ZP_01064682.1| GTP-binding protein Era [Vibrio sp. MED222]
 gi|218710568|ref|YP_002418189.1| GTP-binding protein Era [Vibrio splendidus LGP32]
 gi|84376759|gb|EAP93634.1| GTP-binding protein Era [Vibrio splendidus 12B01]
 gi|85835837|gb|EAQ53971.1| GTP-binding protein Era [Vibrio sp. MED222]
 gi|218323587|emb|CAV19827.1| GTP-binding protein era homolog [Vibrio splendidus LGP32]
          Length = 323

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  + + ++ EG Y     DT G+   
Sbjct: 32  IAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRI-MGVETEGDYQAIYVDTPGLH-- 88

Query: 281 DDIVEKEGIKRTFLEVENADL 301
             I EK  I R      N+ L
Sbjct: 89  --IEEKRAINRLMNRAANSSL 107


>gi|330972147|gb|EGH72213.1| GTP-binding protein YsxC [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 211

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ N IL L    +  +S  K+ +   + G+++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QLKNPILGLCQQATFMLSAAKVDQCPDDEGFEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTR--DVLTID-----LDLEGY 267
            PG T+  +   +D     +DL GY
Sbjct: 62  TPGRTQLLNFFGLDEDRRLVDLPGY 86


>gi|330957164|gb|EGH57424.1| GTP-binding protein YsxC [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 211

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ N IL L    +  +S  K+ +   + G+++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QLKNPILGLCQQATFMLSAAKVDQCPDDEGFEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTR--DVLTID-----LDLEGY 267
            PG T+  +   +D     +DL GY
Sbjct: 62  TPGRTQLLNFFGLDEDRRLVDLPGY 86


>gi|322815503|gb|EFZ24148.1| hypothetical protein TCSYLVIO_9727 [Trypanosoma cruzi]
          Length = 380

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           K+ +LG  N+GK+SL NAL+   +  V++  G+T+D +     +    + + DT G+
Sbjct: 92  KLALLGPQNSGKTSLLNALSLSHIGAVSNRSGSTKDWIKGVATVHNTQLVLLDTPGV 148


>gi|283779177|ref|YP_003369932.1| GTP-binding protein HSR1-like protein [Pirellula staleyi DSM 6068]
 gi|283437630|gb|ADB16072.1| GTP-binding protein HSR1-related protein [Pirellula staleyi DSM
           6068]
          Length = 524

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 12/102 (11%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT--RDVLTIDLD 263
           ++ Q +  E++    +IV  G  ++GKSSL NALA +D+       GTT  R  +    D
Sbjct: 129 NVEQKQAAEVL----EIVAFGSISSGKSSLLNALAGRDIFSTDPRGGTTLVRQEVPWPGD 184

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
               LV   DT G+ E D     E +  T     NADL+LL+
Sbjct: 185 DRVLLV---DTPGLAEVDG---DERLIVTAASARNADLVLLV 220


>gi|264677119|ref|YP_003277025.1| GTP-binding protein Era [Comamonas testosteroni CNB-2]
 gi|299530660|ref|ZP_07044075.1| GTP-binding protein Era [Comamonas testosteroni S44]
 gi|262207631|gb|ACY31729.1| GTP-binding protein Era [Comamonas testosteroni CNB-2]
 gi|298721176|gb|EFI62118.1| GTP-binding protein Era [Comamonas testosteroni S44]
          Length = 367

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L NAL  + ++I +    TTR  +T I    E   V + DT G +  
Sbjct: 77  IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTKDETQFVFV-DTPGFQTK 135

Query: 281 DDIVEKEGIKRTFL-EVENADLILLLKEINS 310
                 + + +T +  + + DLIL + E  S
Sbjct: 136 HSTALNKSLNKTVMGAIGDVDLILFVVEAGS 166


>gi|254821028|ref|ZP_05226029.1| GTPase [Mycobacterium intracellulare ATCC 13950]
          Length = 473

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 31/183 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I I+G++NAGKSSL NAL    V    A+   +  TTR     + D EG    ++DT G 
Sbjct: 252 IAIVGYTNAGKSSLLNALTGAGVLVQDALFATLEPTTRRA---EFD-EGRSFVLTDTVGF 307

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISFPKNIDF------ 322
                    E  + T  EV +ADL++          L +IN+ +++      D       
Sbjct: 308 VRHLPTQLVEAFRSTLEEVVDADLLVHVVDGSDVNPLAQINAVRQVVTDVIADHDGAPPP 367

Query: 323 -IFIGTKSDLYSTYT-EEYDH------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            + +  K D  S     +  H       +S+ TGEG++ L  +I  +       +   IP
Sbjct: 368 ELLVVNKVDAASDLALAKLRHALPGAVFVSARTGEGIDALRRRIAELAVPADTAVDVVIP 427

Query: 375 SHK 377
             +
Sbjct: 428 YQR 430


>gi|254714186|ref|ZP_05175997.1| GTP1/OBG [Brucella ceti M644/93/1]
 gi|254717621|ref|ZP_05179432.1| GTP1/OBG [Brucella ceti M13/05/1]
 gi|261219457|ref|ZP_05933738.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261321953|ref|ZP_05961150.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260924546|gb|EEX91114.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294643|gb|EEX98139.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 472

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 43/224 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 235 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLRRIRLPHGETVILSDTVGFISN 293

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  ADLIL +++I+     +  ++++ I   +G +   ++   E 
Sbjct: 294 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 353

Query: 339 YDHL--------------------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           ++ +                          +S+ TGEG++ L++ I++ ++     +   
Sbjct: 354 WNKIDNLDESAREAALRLAAAGSEEGRPIPVSAITGEGVDRLLSLIETRIAGALGSVDLV 413

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           +     HL  L    R+           G D+  ENL   SV +
Sbjct: 414 LSPFDLHL--LDWIYRH-----------GSDVQRENLEDGSVRI 444


>gi|254704399|ref|ZP_05166227.1| GTP1/OBG [Brucella suis bv. 3 str. 686]
 gi|261755076|ref|ZP_05998785.1| GTP-binding protein [Brucella suis bv. 3 str. 686]
 gi|261744829|gb|EEY32755.1| GTP-binding protein [Brucella suis bv. 3 str. 686]
          Length = 472

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 30/174 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 235 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLRRIRLPHGETVILSDTVGFISN 293

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  ADLIL +++I+     +  ++++ I   +G +   ++   E 
Sbjct: 294 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 353

Query: 339 YDHL--------------------------ISSFTGEGLEELINKIKSILSNKF 366
           ++ +                          +S+ TGEG++ L++ I++ ++   
Sbjct: 354 WNKIDNLDESAREAALRLAAAGSEEGRPIPVSAITGEGVDRLLSLIETRIAGAL 407


>gi|229059706|ref|ZP_04197083.1| GTPase [Bacillus cereus AH603]
 gi|228719535|gb|EEL71136.1| GTPase [Bacillus cereus AH603]
          Length = 349

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI-------PGTTRDVLTIDLDL 264
           L + +  G  I ++G S AGKS+L NAL   DVA   DI         TT       L  
Sbjct: 186 LQQFVSPGKTIALVGSSGAGKSTLLNALIGTDVAKTGDIREEDSKGRHTTTHRELFQLPS 245

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            G ++   DT G+RE         I+ TF ++E
Sbjct: 246 GGLVI---DTPGMRELQLWEGSTAIQTTFSDIE 275


>gi|224542141|ref|ZP_03682680.1| hypothetical protein CATMIT_01316 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524909|gb|EEF94014.1| hypothetical protein CATMIT_01316 [Catenibacterium mitsuokai DSM
           15897]
          Length = 707

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRE 279
           KI + G+ N+GK++LFNAL       V + PG T  V   D  L+G+  V I D  GI  
Sbjct: 2   KIALAGNPNSGKTTLFNALT-GSTQYVGNWPGVT--VEKKDGKLKGHKDVTIQDLPGIYS 58

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                 +E + R +L  E  D I+
Sbjct: 59  LSPYTLEEVVTRRYLINETPDAII 82


>gi|212224366|ref|YP_002307602.1| GTP-binding protein [Thermococcus onnurineus NA1]
 gi|212009323|gb|ACJ16705.1| GTP-binding protein [Thermococcus onnurineus NA1]
          Length = 185

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           K+ I+G  N GKS+L NAL    ++ V ++PGTT+  +
Sbjct: 3   KVAIIGAENVGKSTLMNALIGGKISEVENLPGTTKGTI 40


>gi|17231354|ref|NP_487902.1| GTP-binding protein [Nostoc sp. PCC 7120]
 gi|17132996|dbj|BAB75561.1| GTP-binding protein [Nostoc sp. PCC 7120]
          Length = 528

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI-----PGTTR 255
           + + +H S+ +     R    + ++G++NAGKS+L NAL   +V     +     P T R
Sbjct: 336 DQLQAHRSRLRQRRQHREVPSVALVGYTNAGKSTLLNALTNAEVYTADQLFATLDPTTRR 395

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            V+      E   + I+DT G          +  + T  EV  AD +L L +++    +S
Sbjct: 396 LVIPHAETGEPQGILITDTVGFIHELPASLMDAFRATLEEVTEADALLHLVDLSHPAWLS 455

Query: 316 FPKNIDFIF 324
             + +  I 
Sbjct: 456 HIRAVREIL 464


>gi|17545940|ref|NP_519342.1| hypothetical protein RSc1221 [Ralstonia solanacearum GMI1000]
 gi|17428235|emb|CAD14923.1| putative gtpase protein [Ralstonia solanacearum GMI1000]
          Length = 417

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           + + + ++G++NAGKS+LFNAL K        +  T  D  +  L LEG   V +SDT G
Sbjct: 200 DAFSVSLVGYTNAGKSTLFNALTKARAYAANQLFATL-DTTSRRLYLEGLGNVVLSDTVG 258


>gi|315645928|ref|ZP_07899049.1| ribosome biogenesis GTPase YqeH [Paenibacillus vortex V453]
 gi|315278689|gb|EFU42003.1| ribosome biogenesis GTPase YqeH [Paenibacillus vortex V453]
          Length = 374

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R    + ++G +N GKSSL N L +          V+  PGTT D++ I LD   Y++  
Sbjct: 163 RGDRDVYVVGATNVGKSSLINRLIRDYSDLDQELTVSRYPGTTLDMVNIPLDDGRYII-- 220

Query: 272 SDTAGI 277
            DT GI
Sbjct: 221 -DTPGI 225


>gi|266625814|ref|ZP_06118749.1| GTP-binding protein HflX [Clostridium hathewayi DSM 13479]
 gi|288862283|gb|EFC94581.1| GTP-binding protein HflX [Clostridium hathewayi DSM 13479]
          Length = 214

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 32/163 (19%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAG-IRE- 279
            I+G++NAGKS+L N L    + +  D    T D  T +L+L G   + ++DT G IR+ 
Sbjct: 59  AIVGYTNAGKSTLLNTLTDAGI-LAEDKLFATLDPTTRNLELPGGEQILLTDTVGFIRKL 117

Query: 280 TDDIVEKEGIKRTFLEVENADLIL-------------------LLKE--INSKKEISFPK 318
             +++E    K T  E + +D+IL                    LK+  ++ K+ I+   
Sbjct: 118 PHNLIE--AFKSTLEEAKYSDIILHVVDCSNPQMDMQMYVVYETLKDLGVHDKEVITVFN 175

Query: 319 NIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
            ID    +    DL S Y  +    IS+ TGEGL+EL+N ++S
Sbjct: 176 KIDAAGEMRIPRDLSSDYQVK----ISAKTGEGLDELLNLLES 214


>gi|255311185|ref|ZP_05353755.1| GTP binding protein [Chlamydia trachomatis 6276]
 gi|255317486|ref|ZP_05358732.1| GTP binding protein [Chlamydia trachomatis 6276s]
          Length = 447

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 28/176 (15%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDI-----PGTTRDVL-----TIDLDLEGYLVKIS 272
            ++G++N+GKS+L N L   D  +   +     P T R VL      +  D  G++ K+ 
Sbjct: 230 ALIGYTNSGKSTLLNLLTSADTYVENKLFATLDPKTRRCVLPCGQRVLLTDTVGFIRKLP 289

Query: 273 DT--AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPK------ 318
            T  A  + T +   +E I    L V +A   L L+ + + K I      + P+      
Sbjct: 290 HTLVAAFKSTLEAALQEDI---LLHVVDASHPLALEHVETTKAILQELGITQPQVITVLN 346

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            ID +  G  +      +      +S+ TGEG+ EL+  ++ ++  ++ +    +P
Sbjct: 347 KIDKVADGVTASRLRLMSPN-PVCVSAKTGEGIRELLRSMEDMVQEEYPQATLHLP 401


>gi|221068687|ref|ZP_03544792.1| GTP-binding protein Era [Comamonas testosteroni KF-1]
 gi|220713710|gb|EED69078.1| GTP-binding protein Era [Comamonas testosteroni KF-1]
          Length = 367

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+L NAL  + ++I +    TTR  +T I    E   V + DT G +  
Sbjct: 77  IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTKDETQFVFV-DTPGFQTK 135

Query: 281 DDIVEKEGIKRTFL-EVENADLILLLKEINS 310
                 + + +T +  + + DLIL + E  S
Sbjct: 136 HSTALNKSLNKTVMGAIGDVDLILFVVEAGS 166


>gi|196003102|ref|XP_002111418.1| hypothetical protein TRIADDRAFT_23415 [Trichoplax adhaerens]
 gi|190585317|gb|EDV25385.1| hypothetical protein TRIADDRAFT_23415 [Trichoplax adhaerens]
          Length = 405

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           ++G  N GKSS+ N+L +     V   PG T+++  I+LD     +K+ D+ GI
Sbjct: 220 VVGLPNVGKSSVINSLKRSRACTVGSEPGVTKNMQEINLDKH---IKLLDSPGI 270


>gi|330793175|ref|XP_003284661.1| hypothetical protein DICPUDRAFT_148454 [Dictyostelium purpureum]
 gi|325085460|gb|EGC38867.1| hypothetical protein DICPUDRAFT_148454 [Dictyostelium purpureum]
          Length = 770

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 22/39 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           I ++GH N GKSSL N L  K V   +  PG T+   TI
Sbjct: 438 IGMVGHPNVGKSSLINGLMGKKVVSTSRTPGHTKHFQTI 476


>gi|257456513|ref|ZP_05621709.1| GTP-binding protein era homolog [Treponema vincentii ATCC 35580]
 gi|257446173|gb|EEV21220.1| GTP-binding protein era homolog [Treponema vincentii ATCC 35580]
          Length = 72

 Score = 37.4 bits (85), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R+G  + I+G  +AGKS+  N++  K V+IV+ +P TTR  +   L  E   +   DT 
Sbjct: 6   MRSGV-VCIIGRPSAGKSTFLNSVCGKTVSIVSALPQTTRSSVRGILTAEQGQIIFLDTP 64

Query: 276 G 276
           G
Sbjct: 65  G 65


>gi|254706704|ref|ZP_05168532.1| GTP1/OBG [Brucella pinnipedialis M163/99/10]
 gi|254710188|ref|ZP_05171999.1| GTP1/OBG [Brucella pinnipedialis B2/94]
 gi|256031682|ref|ZP_05445296.1| GTP1/OBG [Brucella pinnipedialis M292/94/1]
 gi|256159838|ref|ZP_05457571.1| GTP1/OBG [Brucella ceti M490/95/1]
 gi|256255084|ref|ZP_05460620.1| GTP1/OBG [Brucella ceti B1/94]
 gi|260168816|ref|ZP_05755627.1| GTP1/OBG [Brucella sp. F5/99]
 gi|261222277|ref|ZP_05936558.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261314166|ref|ZP_05953363.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317745|ref|ZP_05956942.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261758301|ref|ZP_06002010.1| GTP1/OBG [Brucella sp. F5/99]
 gi|265988776|ref|ZP_06101333.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265998241|ref|ZP_06110798.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|260920861|gb|EEX87514.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261296968|gb|EEY00465.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261303192|gb|EEY06689.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261738285|gb|EEY26281.1| GTP1/OBG [Brucella sp. F5/99]
 gi|262552709|gb|EEZ08699.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264660973|gb|EEZ31234.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
          Length = 472

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 43/224 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 235 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLRRIRLPHGETVILSDTVGFISN 293

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  ADLIL +++I+     +  ++++ I   +G +   ++   E 
Sbjct: 294 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 353

Query: 339 YDHL--------------------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           ++ +                          +S+ TGEG++ L++ I++ ++     +   
Sbjct: 354 WNKIDNLDESAREAALRLAAAGSEEGRPIPVSAITGEGVDRLLSLIETRIAGALGSVDLV 413

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           +     HL  L    R+           G D+  ENL   SV +
Sbjct: 414 LSPFDLHL--LDWIYRH-----------GSDVQRENLEDGSVRI 444


>gi|168047724|ref|XP_001776319.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672279|gb|EDQ58818.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 222

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 208 SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLE 265
           S  K  E    GY +  ++G SN GKSSL N+L  +K++A  +  PG T+ +    ++ +
Sbjct: 28  SSSKESECPSEGYPEFALVGRSNVGKSSLINSLVLRKELAQTSKKPGKTQLINHFLINKK 87

Query: 266 GYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLL 305
            YLV +    G  +    V     E  K  FL+ E    +LLL
Sbjct: 88  WYLVDLPGY-GFAKAPTAVRTDWNEFTKDYFLQRETLACVLLL 129


>gi|163746239|ref|ZP_02153597.1| GTP-binding protein HflX, putative [Oceanibulbus indolifex HEL-45]
 gi|161380124|gb|EDQ04535.1| GTP-binding protein HflX, putative [Oceanibulbus indolifex HEL-45]
          Length = 432

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 27/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN L   +V +  D+   T D     L L +G  + +SDT G    
Sbjct: 214 VALVGYTNAGKSTLFNRLTGAEV-MAKDMLFATLDPTMRSLVLPDGPEIILSDTVGFISD 272

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------EISFPKNIDFIFIGT 327
                    + T  EV  AD+I  +++++  +              +  PK      +  
Sbjct: 273 LPTELVASFRATLEEVLAADIICHVRDVSHAETEEQAQNVRDILASLGVPKETRSFEVWN 332

Query: 328 KSDLYSTYTEEY--------DHL--ISSFTGEGLEELINKIKSILSNKFKK--LPFSIPS 375
           K DL      +         D L  IS+ TGEGLE L   I   L    ++  L      
Sbjct: 333 KLDLLPEDRADAMRARAARNDDLLAISAITGEGLEALQETIAEALQGAVREAVLTLGFSD 392

Query: 376 HKRHLYHLSQTV 387
            K+  +  +Q V
Sbjct: 393 GKKRAWLFAQDV 404


>gi|119719759|ref|YP_920254.1| ferrous iron transport protein B [Thermofilum pendens Hrk 5]
 gi|119524879|gb|ABL78251.1| ferrous iron transport protein B [Thermofilum pendens Hrk 5]
          Length = 695

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ + G  N GKS+LFN L       V + PG T D    +++  G  ++  D  G    
Sbjct: 6   RVALAGAPNVGKSTLFNVLVGAH-RFVGNWPGKTVDRYEGEVEHHGVRIRFIDLPGTYSL 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
               E+E I R F+  E  D ++++
Sbjct: 65  SAQSEEEEIARDFIVNEKPDTVIVV 89


>gi|110643992|ref|YP_671722.1| hypothetical protein ECP_3850 [Escherichia coli 536]
 gi|24528051|emb|CAD33781.1| hypothetical protein [Escherichia coli]
 gi|110345584|gb|ABG71821.1| hypothetical protein ECP_3850 [Escherichia coli 536]
          Length = 294

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           S +V + + FL  +I   I +  L  +I     I I+G S  GKSSL NA+ +  +    
Sbjct: 9   SAQVKSYLTFLPEEIRQKILE-HLHGVIHYEPVIGIMGKSGTGKSSLCNAIFQSRICATH 67

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + G TR    + L +    + + D  GI ET
Sbjct: 68  PLNGCTRQAHRLTLQIGERRMTLVDLPGIGET 99


>gi|297248425|ref|ZP_06932143.1| GTP-binding protein HflX [Brucella abortus bv. 5 str. B3196]
 gi|297175594|gb|EFH34941.1| GTP-binding protein HflX [Brucella abortus bv. 5 str. B3196]
          Length = 490

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 30/174 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 253 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLRRIRLPHGETVILSDTVGFISN 311

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  ADLIL +++I+     +  ++++ I   +G +   ++   E 
Sbjct: 312 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 371

Query: 339 YDHL--------------------------ISSFTGEGLEELINKIKSILSNKF 366
           ++ +                          +S+ TGEG++ L++ I++ ++   
Sbjct: 372 WNKIDNLDESAREAALRLAAVGSEEGRPIPVSAITGEGVDRLLSLIETRIAGAL 425


>gi|228472917|ref|ZP_04057674.1| GTP-binding protein HflX [Capnocytophaga gingivalis ATCC 33624]
 gi|228275499|gb|EEK14276.1| GTP-binding protein HflX [Capnocytophaga gingivalis ATCC 33624]
          Length = 407

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLD 263
            +G  G ++R    + ++G++N GKS+L N ++K DV     +   +  T R V+  +L 
Sbjct: 192 QRGNRGALVR----VALIGYTNVGKSTLMNLISKSDVFAEDKLFATLDTTVRKVVIGNLP 247

Query: 264 LEGYLVKISDTAG-IRE--TDDIVEKEGIKRTFLEVENADLILLLKEIN 309
                  +SDT G IR+  T+ I   E  K T  EV +ADL+L + +I+
Sbjct: 248 F-----LLSDTVGFIRKLPTELI---ESFKSTLDEVRDADLLLHVVDIS 288


>gi|195394346|ref|XP_002055806.1| GJ10591 [Drosophila virilis]
 gi|194142515|gb|EDW58918.1| GJ10591 [Drosophila virilis]
          Length = 581

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 72/153 (47%), Gaps = 9/153 (5%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L +    +V   PG T+ +  ++LD +   +K+ D  
Sbjct: 264 IKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKAMQEVELDSK---IKLIDCP 320

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG----TKSDL 331
           GI  T   +  EG +     ++NA  +  +K+  S  E    +     F      T  D 
Sbjct: 321 GIVFTS--IASEGNENAHAVLKNAQRVGDVKDPFSIAESVLKRASKDYFCKMYDITSYDT 378

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           +  +  +    +  F  +G+ ++++  +S+L++
Sbjct: 379 FEEFFAKKAARMGKFLKKGVPDVVSAARSVLND 411


>gi|157364447|ref|YP_001471214.1| GTP-binding protein HSR1-related [Thermotoga lettingae TMO]
 gi|157315051|gb|ABV34150.1| GTP-binding protein HSR1-related [Thermotoga lettingae TMO]
          Length = 367

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 27/137 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK---ISDTAGIR 278
           ++ +G +N GKSS+F  L   DV  VT  PGTT       LDL    VK   I DT GI 
Sbjct: 158 VIFVGMTNVGKSSIFQKLTGVDVN-VTPFPGTT-------LDLIKATVKNTDIFDTPGIF 209

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--KEISF-PKNIDFIFIGTKSDLYSTY 335
               I++       FLE  +       K+I+ K    ++F P+    IFIG    L  ++
Sbjct: 210 SNRRIID-------FLEPGSQ------KKISQKSLSRMTFKPQKGQTIFIGGLCRLDFSF 256

Query: 336 TEEYDHLISSFTGEGLE 352
             E   +   F  E ++
Sbjct: 257 DTELPPIFQIFASESVK 273


>gi|326773544|ref|ZP_08232827.1| GTP-binding protein Era [Actinomyces viscosus C505]
 gi|326636774|gb|EGE37677.1| GTP-binding protein Era [Actinomyces viscosus C505]
          Length = 397

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+   I+G  NAGKS+L NA+    +AI +  P TTR  +   +  E   + + D
Sbjct: 94  EDFRAGFA-CIVGRPNAGKSTLTNAMVGAKIAITSGRPQTTRHNVRGVIHKENAQIVLVD 152

Query: 274 TAGI 277
           T G+
Sbjct: 153 TPGL 156


>gi|238883008|gb|EEQ46646.1| nucleolar GTP-binding protein 2 [Candida albicans WO-1]
          Length = 533

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+
Sbjct: 313 RKQISVGFIGYPNTGKSSIINTLRKKKVCQVAPIPGETK 351


>gi|225027254|ref|ZP_03716446.1| hypothetical protein EUBHAL_01510 [Eubacterium hallii DSM 3353]
 gi|224955407|gb|EEG36616.1| hypothetical protein EUBHAL_01510 [Eubacterium hallii DSM 3353]
          Length = 301

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + +AI +    TTR+ + T+    EG +V + DT GI + 
Sbjct: 10  VTIIGRPNVGKSTLMNQLIGQKIAITSSKAQTTRNRIQTVYTSEEGQIVFL-DTPGINKA 68

Query: 281 DDIVEK---EGIKRTFLEVENADLILLLKE 307
            + +        +RT  EV   DLIL L E
Sbjct: 69  KNKLGDYMLMAAERTLNEV---DLILWLVE 95


>gi|157413310|ref|YP_001484176.1| GTPase SAR1-like protein [Prochlorococcus marinus str. MIT 9215]
 gi|157387885|gb|ABV50590.1| GTPase SAR1-like protein [Prochlorococcus marinus str. MIT 9215]
          Length = 499

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 14/117 (11%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           E+LN   + KN + S +  G         Y + + G  ++GK+SL  +L K  V   +  
Sbjct: 98  ELLN---YQKNKLESQLKTG--------DYNVTLFGAGSSGKTSLVRSLLKNIVGQTSAK 146

Query: 251 PGTTRDV--LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GTT+ +    I + +    + I DT G+ E   + E E  K T ++  N+DL+L +
Sbjct: 147 IGTTKQINSYKIRIPILKRNINIVDTPGLFEPSKLGE-EREKATIIQASNSDLVLFV 202


>gi|309806580|ref|ZP_07700577.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 03V1-b]
 gi|308167000|gb|EFO69182.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 03V1-b]
          Length = 300

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + ++G  N GKS+L N L  + VAI+++ P TTR+ ++     +   +   DT GI +  
Sbjct: 11  VALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIFIDTPGIHKPK 70

Query: 281 ---DDIVEK 286
              DD ++K
Sbjct: 71  NNLDDFMDK 79


>gi|307286839|ref|ZP_07566921.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0109]
 gi|306502054|gb|EFM71340.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX0109]
          Length = 369

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R    + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 159 EKYREDRDVYVVGVTNVGKSTLINQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 218

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 219 I---DTPGI 224


>gi|303233733|ref|ZP_07320387.1| GTP-binding protein Era [Finegoldia magna BVS033A4]
 gi|302495167|gb|EFL54919.1| GTP-binding protein Era [Finegoldia magna BVS033A4]
          Length = 294

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           + ++G SN GKS+L N +  + + I++D P TTR+ + +    E       DT GI+
Sbjct: 7   VSVIGRSNVGKSTLLNRVLGEKLTIISDKPQTTRNKIQLIYTDENMQAIFLDTPGIQ 63


>gi|226530446|ref|NP_001151819.1| GTP-binding protein [Zea mays]
 gi|194700920|gb|ACF84544.1| unknown [Zea mays]
 gi|195649961|gb|ACG44448.1| GTP-binding protein [Zea mays]
          Length = 308

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 223 VILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            +LG SN GKSSL NAL  +K+ A+ +  PG T+ +    ++   YLV +
Sbjct: 129 AVLGRSNVGKSSLINALTRRKEAALTSKKPGKTQTINHFLVNKSWYLVDL 178


>gi|116511052|ref|YP_808268.1| GTPase [Lactococcus lactis subsp. cremoris SK11]
 gi|116106706|gb|ABJ71846.1| GTP-binding protein HflX [Lactococcus lactis subsp. cremoris SK11]
          Length = 414

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDV------AIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           ++I ++G++NAGKSS+ NAL   D        +   +  TT+ V  +    E ++V ++D
Sbjct: 200 FRIGLIGYTNAGKSSIMNALVGLDKEQYEQNELFATLDATTKAVQLV----EDFMVSLTD 255

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           T G  +       +  K T  E  N DL++
Sbjct: 256 TVGFIQNLPTELIKAFKSTLEESANVDLLI 285


>gi|304403961|ref|ZP_07385623.1| GTP-binding protein Era [Paenibacillus curdlanolyticus YK9]
 gi|304346939|gb|EFM12771.1| GTP-binding protein Era [Paenibacillus curdlanolyticus YK9]
          Length = 306

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           + I+G  N GKS+L N +  + +AI++D P TTR+
Sbjct: 17  VAIVGRPNVGKSTLMNHIIGQKIAIMSDKPQTTRN 51


>gi|259500586|ref|ZP_05743488.1| GTP-binding protein Era [Lactobacillus iners DSM 13335]
 gi|302191277|ref|ZP_07267531.1| GTP-binding protein Era [Lactobacillus iners AB-1]
 gi|309805224|ref|ZP_07699276.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 09V1-c]
 gi|309810245|ref|ZP_07704090.1| ribosome biogenesis GTPase Era [Lactobacillus iners SPIN 2503V10-D]
 gi|312871783|ref|ZP_07731871.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 3008A-a]
 gi|312872928|ref|ZP_07732988.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2062A-h1]
 gi|312874162|ref|ZP_07734196.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2052A-d]
 gi|312875582|ref|ZP_07735583.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2053A-b]
 gi|315653578|ref|ZP_07906498.1| GTP-binding protein Era [Lactobacillus iners ATCC 55195]
 gi|325912100|ref|ZP_08174498.1| ribosome biogenesis GTPase Era [Lactobacillus iners UPII 143-D]
 gi|325912581|ref|ZP_08174964.1| ribosome biogenesis GTPase Era [Lactobacillus iners UPII 60-B]
 gi|329920169|ref|ZP_08277000.1| ribosome biogenesis GTPase Era [Lactobacillus iners SPIN 1401G]
 gi|259167970|gb|EEW52465.1| GTP-binding protein Era [Lactobacillus iners DSM 13335]
 gi|308165458|gb|EFO67689.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 09V1-c]
 gi|308169517|gb|EFO71565.1| ribosome biogenesis GTPase Era [Lactobacillus iners SPIN 2503V10-D]
 gi|311088836|gb|EFQ47279.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2053A-b]
 gi|311090232|gb|EFQ48642.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2052A-d]
 gi|311091450|gb|EFQ49834.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2062A-h1]
 gi|311092725|gb|EFQ51081.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 3008A-a]
 gi|315488940|gb|EFU78582.1| GTP-binding protein Era [Lactobacillus iners ATCC 55195]
 gi|325476050|gb|EGC79218.1| ribosome biogenesis GTPase Era [Lactobacillus iners UPII 143-D]
 gi|325478002|gb|EGC81131.1| ribosome biogenesis GTPase Era [Lactobacillus iners UPII 60-B]
 gi|328936623|gb|EGG33067.1| ribosome biogenesis GTPase Era [Lactobacillus iners SPIN 1401G]
          Length = 300

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + ++G  N GKS+L N L  + VAI+++ P TTR+ ++     +   +   DT GI +  
Sbjct: 11  VALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIFIDTPGIHKPK 70

Query: 281 ---DDIVEK 286
              DD ++K
Sbjct: 71  NNLDDFMDK 79


>gi|241956820|ref|XP_002421130.1| nucleolar GTP-binding protein, putative [Candida dubliniensis CD36]
 gi|223644473|emb|CAX41289.1| nucleolar GTP-binding protein, putative [Candida dubliniensis CD36]
          Length = 538

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    +L+   D  G
Sbjct: 313 RKQISVGFIGYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLMKRIFLI---DCPG 369

Query: 277 I 277
           I
Sbjct: 370 I 370


>gi|161505135|ref|YP_001572247.1| putative GTPase HflX [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866482|gb|ABX23105.1| hypothetical protein SARI_03269 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 426

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 27/202 (13%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +     QG+   I  +   + ++G++NAGKS+LFN + +  V     +  T    L  ID
Sbjct: 181 VEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNQITEARVYAADQLFATLDPTLRRID 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILL------------LKE 307
           +   G  V ++DT G IR    D+V     K T  E   A L+L             ++ 
Sbjct: 241 VADVGETV-LADTVGFIRHLPHDLV--AAFKATLQETRQATLLLHVVDAADVRVQENIEA 297

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKI 358
           +N+  E      I  + +  K D+   +    D           +S+ TG G+ +L   +
Sbjct: 298 VNTVLEEIDAHEIPTLMVMNKIDMLDNFEPRIDRDEENKPIRVWLSAQTGVGIPQLFQAL 357

Query: 359 KSILSNKFKKLPFSIPSHKRHL 380
              LS +  +    +P  +  L
Sbjct: 358 TERLSGEVAQRTLRLPPQEGRL 379


>gi|328885518|emb|CCA58757.1| GTP-binding protein HflX [Streptomyces venezuelae ATCC 10712]
          Length = 497

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 21/173 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I G++NAGKSSL N L    V +   +  T    +       G +  ++DT G +R  
Sbjct: 278 VAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRAETPTGRVYTLADTVGFVRHL 337

Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI---SFPKNIDFIFIGTK 328
              +  E  + T  EV ++DLIL +         +++ + +E+       N+  I +  K
Sbjct: 338 PHHL-VEAFRSTMEEVGDSDLILHVVDGSHPAPEEQLAAVREVFRDVGAVNVPEIVVINK 396

Query: 329 SDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +D             E++  ++S+ +G+G+E+L+  I S L     +L   +P
Sbjct: 397 ADAADPLVLQRLLRMEKHSIVVSARSGQGIEQLLALIDSELPRPEVELEALVP 449


>gi|331650749|ref|ZP_08351777.1| putative histone [Escherichia coli M718]
 gi|331051203|gb|EGI23252.1| putative histone [Escherichia coli M718]
          Length = 80

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           I I+G S AGKSSL NAL + +V  V+D+   TR+V
Sbjct: 39  IGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREV 74


>gi|317052023|ref|YP_004113139.1| ribosome small subunit-dependent GTPase A [Desulfurispirillum
           indicum S5]
 gi|316947107|gb|ADU66583.1| ribosome small subunit-dependent GTPase A [Desulfurispirillum
           indicum S5]
          Length = 357

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 203 ISSHISQGK--LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT-----DIPGTTR 255
           +S+H  +G   LG    +G  I  +G S  GKSSL NALA ++V   +     D  G   
Sbjct: 175 VSAHTGRGMDGLGAYATSGQTICFIGSSGVGKSSLVNALAGEEVMATSHNRHWDGKGRHT 234

Query: 256 DVLTIDLDLEGYLVKISDTAGIRE 279
             +   L L G +  I DT G+RE
Sbjct: 235 TTMRQMLFLPGGITVI-DTPGMRE 257


>gi|146283979|ref|YP_001174132.1| GTP-binding protein HflX [Pseudomonas stutzeri A1501]
 gi|145572184|gb|ABP81290.1| GTP-binding protein HflX [Pseudomonas stutzeri A1501]
          Length = 419

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           + ++G++NAGKS+LFNAL + +V     +  T    L  ++L+  G ++ ++DT G IR 
Sbjct: 187 VSLVGYTNAGKSTLFNALTESEVYAANQLFATLDPTLRRLELEDVGPVI-LADTVGFIRH 245

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
               +  E  + T  E  NADL+L
Sbjct: 246 LPHKL-VESFRATLEESSNADLLL 268


>gi|134098336|ref|YP_001103997.1| GTP-binding protein [Saccharopolyspora erythraea NRRL 2338]
 gi|291004245|ref|ZP_06562218.1| GTP-binding protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133910959|emb|CAM01072.1| GTP-binding protein [Saccharopolyspora erythraea NRRL 2338]
          Length = 502

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 37/175 (21%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + I G++NAGKSSL NAL    V    A+   +  TTR   T D    G    ++DT G 
Sbjct: 280 VAIAGYTNAGKSSLLNALTGAGVLVEDALFATLDPTTRRADTPD----GRPHTLTDTVGF 335

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI--------SFPKN 319
           +R     +  E  + T  EV  ADL++ +         +++ + +E+          P  
Sbjct: 336 VRHLPHQL-VEAFRSTLEEVTGADLLVHVVDGAEQAPHEQVAAVREVLTEIAEDHGAPVP 394

Query: 320 IDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKIKSILSNKFKK 368
            + + +     +  T   E   L      +S+ +GEG+E L    + I++++  +
Sbjct: 395 PELLVVNKIDSVAPTRMAELRRLLPGAVFVSAHSGEGVEAL----REIIADRLPR 445


>gi|119713602|gb|ABL97653.1| GTP-binding protein Era [uncultured marine bacterium EB0_39H12]
          Length = 297

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +++GY + I+G +NAGKS+L N +  + +AI +  P TTR
Sbjct: 4   LKSGY-VSIVGKTNAGKSTLLNNILGQKIAITSRKPQTTR 42


>gi|56475508|ref|YP_157097.1| hypothetical protein ebA137 [Aromatoleum aromaticum EbN1]
 gi|56311551|emb|CAI06196.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 462

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIR 278
           +I ++GH+N GK+SL   L +      V+  P TTR V    L  +G  LV++ DT G+ 
Sbjct: 6   RIAVVGHTNTGKTSLMRTLTRDTGFGEVSSRPSTTRHVEGARLLADGEVLVELYDTPGLE 65

Query: 279 ETDDIVEK 286
           +   ++E+
Sbjct: 66  DPIALLER 73


>gi|317418962|emb|CBN81000.1| Guanine nucleotide binding protein-like 3 [Dicentrarchus labrax]
          Length = 575

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + ++G  N GKSSL N+L +     V   PG T+ +  + LD     +K+ D  
Sbjct: 249 IKTAITVGVVGFPNVGKSSLINSLKRARACSVGATPGVTKCLQEVHLDKH---IKLLDCP 305

Query: 276 GIRETDDIVEKEGIKRTFLEVEN 298
           GI       +   I R  +++E 
Sbjct: 306 GIVMATSTTDAAMILRNCVKIEQ 328


>gi|212212569|ref|YP_002303505.1| GTP-binding protein [Coxiella burnetii CbuG_Q212]
 gi|212010979|gb|ACJ18360.1| GTP-binding protein [Coxiella burnetii CbuG_Q212]
          Length = 454

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 29/168 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI--SDTAG-IR 278
           + ++G++NAGKS+LFNA+ + +V     +  T  D     L+L   LVKI   DT G IR
Sbjct: 206 VSLVGYTNAGKSTLFNAITEANVYTADQLFATL-DPTFRQLELP-TLVKIILVDTVGFIR 263

Query: 279 E-TDDIVEKEGIKRTFLEVENADLIL------------LLKEINSKKEISFPKNIDFIFI 325
           +   D++     + T  E   ADL+L            +L+E+    E    + +  +FI
Sbjct: 264 DLPHDLI--AAFRATLEESRQADLLLHVVDAHSPDSSVMLEEVQKVLETIGAEEVPQLFI 321

Query: 326 GTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSN 364
             K DL  +     D+          +S+ TG G++ L   +  +L +
Sbjct: 322 YNKIDLLESRKPRIDYDEKGKPRRVWLSALTGVGIDLLNPAVVELLGD 369


>gi|110633305|ref|YP_673513.1| GTP-binding protein Era [Mesorhizobium sp. BNC1]
 gi|110284289|gb|ABG62348.1| GTP-binding protein Era [Chelativorans sp. BNC1]
          Length = 305

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 83/184 (45%), Gaps = 30/184 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++      +   +   DT G
Sbjct: 12  RSGF-VALIGAPNAGKSTLLNQLVGAKVSIVTHKVQTTRALVRGIATRDRTQIVFVDTPG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPK-----N 319
           I +    +++  +   +   ++AD++  L +            +++  E+  PK      
Sbjct: 71  IFKPRRRLDRAMVTTAWGGAKDADIVAFLLDAERGIRGDAETILDNLSEVRQPKILILNK 130

Query: 320 ID------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           +D       + +  +++   ++   +  +IS+ TG+G ++L+      L+    + P+  
Sbjct: 131 VDRIKRDKLLVLAAEANERVSFDRTF--MISALTGDGCDDLLG----YLAEALPEGPWYY 184

Query: 374 PSHK 377
           P  +
Sbjct: 185 PEDQ 188


>gi|320352853|ref|YP_004194192.1| GTP-binding protein HSR1-like protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320121355|gb|ADW16901.1| GTP-binding protein HSR1-related protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 483

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
           +  I+GH N GKSS+ + LA+ D   V+  PG T       + ++G  +++  DT G + 
Sbjct: 6   EFAIIGHPNEGKSSVLSTLAEDDSVRVSATPGETVVCQAFPVRIDGREIIRFIDTPGFQN 65

Query: 280 TDDIVE 285
               +E
Sbjct: 66  PRQTLE 71


>gi|307704486|ref|ZP_07641395.1| GTP-binding proten HflX [Streptococcus mitis SK597]
 gi|307621955|gb|EFO00983.1| GTP-binding proten HflX [Streptococcus mitis SK597]
          Length = 412

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNTLTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPRLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E L    + KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVEDFTPTQTPYALISAKSEDSRENLQALFLEKIKEIFEVFTLRVPFS-KSYKIH 375


>gi|255008101|ref|ZP_05280227.1| putative transmembrane ferrous transport fusion protein
           [Bacteroides fragilis 3_1_12]
 gi|313145818|ref|ZP_07808011.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134585|gb|EFR51945.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 827

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GK+SLFN LA      V +  G T D      D +GY  KI D  G
Sbjct: 109 RRTINVALVGNPNCGKTSLFN-LASGAHEHVGNYSGVTVDAKEGYFDFQGYHFKIVDLPG 167

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
                    +E   R  +  E  D+I+
Sbjct: 168 TYSLSAYTPEEIYVRRHIIDETPDVII 194


>gi|225180945|ref|ZP_03734393.1| GTP-binding protein HSR1-related [Dethiobacter alkaliphilus AHT 1]
 gi|225168426|gb|EEG77229.1| GTP-binding protein HSR1-related [Dethiobacter alkaliphilus AHT 1]
          Length = 288

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +++++G  N GKSSL N L K+  A   D PG T+    + ++ EG  ++I DT G+
Sbjct: 115 RLIVVGIPNVGKSSLINRLTKRSAAATGDKPGITKGKQWVRVN-EG--LEILDTPGM 168


>gi|333009349|gb|EGK28805.1| GTP-binding proten HflX [Shigella flexneri K-218]
          Length = 426

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 27/202 (13%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +     QG+   I  +   + ++G++NAGKS+LFN + +  V     +  T    L  ID
Sbjct: 181 VEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRID 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILL------------LKE 307
           +   G  V ++DT G IR    D+V     K T  E   A L+L             ++ 
Sbjct: 241 VADVGETV-LADTVGFIRHLPHDLV--AAFKATLQETRQATLLLHVIDAADVRVQENIEA 297

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKI 358
           +N+  E      I  + +  K D+   +    D           +S+ TG G+ +L   +
Sbjct: 298 VNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIPQLFQAL 357

Query: 359 KSILSNKFKKLPFSIPSHKRHL 380
              LS +  +    +P  +  L
Sbjct: 358 TERLSGEVAQHTLRLPPQEGRL 379


>gi|315613462|ref|ZP_07888370.1| GTP-binding protein HflX [Streptococcus sanguinis ATCC 49296]
 gi|315314458|gb|EFU62502.1| GTP-binding protein HflX [Streptococcus sanguinis ATCC 49296]
          Length = 412

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 21/179 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ N L  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNTLTSK-TQYEADELFATLDATTKSIHLGGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDF-----IFIG 326
           +          K T  E ++ DL++ +        E + K  +S  K++D      + + 
Sbjct: 258 QDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEHEKTVLSIMKDLDMEDIPRLTLY 317

Query: 327 TKSDLYS--TYTEEYDHLISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRH 379
            K+DL    T T+    LIS+ + +  E L    + KIK I      ++PFS  S+K H
Sbjct: 318 NKADLVEDFTPTQTPYALISAKSEDSRENLQALFLEKIKEIFEVFTLRVPFS-KSYKIH 375


>gi|298387672|ref|ZP_06997223.1| GTPase EngC protein 2 [Bacteroides sp. 1_1_14]
 gi|298259528|gb|EFI02401.1| GTPase EngC protein 2 [Bacteroides sp. 1_1_14]
          Length = 355

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP---GTTRDVLT----IDLD 263
           +L E I  G  +V +G S  GKSSL N L  K V   +DI    G  R   T    + +D
Sbjct: 189 RLRESITKGETVVFVGSSGVGKSSLVNTLCGKSVLNTSDISLSTGKGRHTSTRREMVLVD 248

Query: 264 LEGYLVKISDTAGIRE 279
             G L+   DT G+RE
Sbjct: 249 GSGVLI---DTPGVRE 261


>gi|254719175|ref|ZP_05180986.1| GTP1/OBG [Brucella sp. 83/13]
 gi|265984171|ref|ZP_06096906.1| GTP-binding protein [Brucella sp. 83/13]
 gi|306838167|ref|ZP_07471023.1| GTP-binding proten HflX [Brucella sp. NF 2653]
 gi|264662763|gb|EEZ33024.1| GTP-binding protein [Brucella sp. 83/13]
 gi|306406757|gb|EFM62980.1| GTP-binding proten HflX [Brucella sp. NF 2653]
          Length = 472

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 30/174 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 235 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLRRIRLPHGETVILSDTVGFISN 293

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  ADLIL +++I+     +  ++++ I   +G +   ++   E 
Sbjct: 294 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 353

Query: 339 YDHL--------------------------ISSFTGEGLEELINKIKSILSNKF 366
           ++ +                          +S+ TGEG++ L++ I++ ++   
Sbjct: 354 WNKIDNLDESAREAALRLAAAGSEEGRPIPVSAITGEGVDRLLSLIETRIAGAL 407


>gi|291302023|ref|YP_003513301.1| GTP-binding proten HflX [Stackebrandtia nassauensis DSM 44728]
 gi|290571243|gb|ADD44208.1| GTP-binding proten HflX [Stackebrandtia nassauensis DSM 44728]
          Length = 466

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 27/176 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + I G++NAGKSSL N L    V    A+   +  TTR   T D    G    +SDT G 
Sbjct: 247 VAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTTRRARTGD----GRDYTLSDTVGF 302

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDF---IFI 325
                    +  + T  EV +ADLI+ +          ++ + +E+      D    + +
Sbjct: 303 VSHLPHQLVDAFRSTLEEVADADLIVHVIDGSHPDPGAQVRAVREVLNDVGADAVPEVLV 362

Query: 326 GTKSD------LYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             K D      L +  T+  D + +S+ TGEG+++L + I+  L      L   +P
Sbjct: 363 VNKIDRAGSEALLTLRTDWPDAVFVSAHTGEGVDKLRDVIEERLPRPAVPLLVCVP 418


>gi|148559818|ref|YP_001259032.1| GTP-binding proten HflX [Brucella ovis ATCC 25840]
 gi|148371075|gb|ABQ61054.1| GTP-binding proten HflX [Brucella ovis ATCC 25840]
          Length = 490

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 30/174 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 253 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPPLRRIRLPHGETVILSDTVGFISN 311

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  ADLIL +++I+     +  ++++ I   +G +   ++   E 
Sbjct: 312 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 371

Query: 339 YDHL--------------------------ISSFTGEGLEELINKIKSILSNKF 366
           ++ +                          +S+ TGEG++ L++ I++ ++   
Sbjct: 372 WNKIDNLDESAREAALRIAAAGSEEGRPIPVSAITGEGVDRLLSLIETRIAGAL 425


>gi|89256263|ref|YP_513625.1| ribosome biogenesis GTP-binding protein YsxC [Francisella
           tularensis subsp. holarctica LVS]
 gi|115314717|ref|YP_763440.1| ribosome biogenesis GTP-binding protein YsxC [Francisella
           tularensis subsp. holarctica OSU18]
 gi|118497636|ref|YP_898686.1| GTPase EngB [Francisella tularensis subsp. novicida U112]
 gi|134302057|ref|YP_001122026.1| ribosome biogenesis GTP-binding protein YsxC [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|167011014|ref|ZP_02275945.1| GTPase EngB [Francisella tularensis subsp. holarctica FSC200]
 gi|169656584|ref|YP_001428389.2| ribosome biogenesis GTP-binding protein YsxC [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|187931483|ref|YP_001891467.1| ribosome biogenesis GTP-binding protein YsxC [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|195536337|ref|ZP_03079344.1| ATP/GTP-binding protein [Francisella tularensis subsp. novicida
           FTE]
 gi|208779438|ref|ZP_03246784.1| ATP/GTP-binding protein [Francisella novicida FTG]
 gi|254367601|ref|ZP_04983622.1| ATP/GTP-binding protein [Francisella tularensis subsp. holarctica
           257]
 gi|254369249|ref|ZP_04985261.1| hypothetical protein FTAG_00203 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953603|ref|ZP_06558224.1| ribosome biogenesis GTP-binding protein YsxC [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313104|ref|ZP_06803794.1| ribosome biogenesis GTP-binding protein YsxC [Francisella
           tularensis subsp. holarctica URFT1]
 gi|119369197|sp|Q2A3S7|ENGB_FRATH RecName: Full=Probable GTP-binding protein EngB
 gi|119369198|sp|Q0BM81|ENGB_FRATO RecName: Full=Probable GTP-binding protein EngB
 gi|166225954|sp|A0Q6R7|ENGB_FRATN RecName: Full=Probable GTP-binding protein EngB
 gi|166225955|sp|A4IYA4|ENGB_FRATW RecName: Full=Probable GTP-binding protein EngB
 gi|172044104|sp|A7NBT0|ENGB_FRATF RecName: Full=Probable GTP-binding protein EngB
 gi|238691555|sp|B2SG30|ENGB_FRATM RecName: Full=Probable GTP-binding protein EngB
 gi|89144094|emb|CAJ79345.1| ATP/GTP-binding protein [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129616|gb|ABI82803.1| GTPase [Francisella tularensis subsp. holarctica OSU18]
 gi|118423542|gb|ABK89932.1| ATP/GTP-binding protein [Francisella novicida U112]
 gi|134049834|gb|ABO46905.1| GTP binding protein [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134253412|gb|EBA52506.1| ATP/GTP-binding protein [Francisella tularensis subsp. holarctica
           257]
 gi|157122199|gb|EDO66339.1| hypothetical protein FTAG_00203 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|164551652|gb|ABU61433.2| GTP-binding protein [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|187712392|gb|ACD30689.1| ATP/GTP-binding protein [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|194372814|gb|EDX27525.1| ATP/GTP-binding protein [Francisella tularensis subsp. novicida
           FTE]
 gi|208745238|gb|EDZ91536.1| ATP/GTP-binding protein [Francisella novicida FTG]
 gi|332678344|gb|AEE87473.1| GTP-binding protein EngB [Francisella cf. novicida Fx1]
          Length = 197

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 9/65 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL-------DLEGY-LV 269
           G ++   G SNAGKSS  N L  +K +A V+  PG T+ +   DL       DL GY   
Sbjct: 23  GVEVAFAGRSNAGKSSALNTLTDQKGLARVSKTPGRTQLINLFDLGNNNRLVDLPGYGYA 82

Query: 270 KISDT 274
           K+S++
Sbjct: 83  KVSES 87


>gi|332970473|gb|EGK09463.1| GTP-binding protein HflX [Psychrobacter sp. 1501(2011)]
          Length = 491

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 102/254 (40%), Gaps = 57/254 (22%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +QG+      +   I ++G++NAGKSSLFN L  +++     +  T    L   LD +G 
Sbjct: 188 AQGRAKRQKSDVLTISLVGYTNAGKSSLFNRLVNENIYAADQLFATLDPTLR-RLDWQGV 246

Query: 268 -LVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL-------------------LL 305
             V + DT G +R    ++V  E    T  E   ADL+L                   +L
Sbjct: 247 GRVVLVDTVGFVRHLPHELV--ESFHATLEETLEADLLLHVIDSASADMHEQIKAVKSVL 304

Query: 306 KEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            EIN+   +            P  I++   G  S +Y          +S+    G+  L 
Sbjct: 305 AEINNDVPVLNVYNKIDLTGEPAQINYSEPGVPSRVY----------VSAKADLGMSMLT 354

Query: 356 NKIKSILSNKFK----KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
             ++ +L+ K       LPF+  + K  LY L      +E     E   G +I+   LRL
Sbjct: 355 TAVQQLLTGKLNTFELTLPFNAGNLKNELYRLD----VVEQEGYAE--SGHEIL--TLRL 406

Query: 412 ASVSLGKITGCVDV 425
            +  L ++ G  D+
Sbjct: 407 PADKLQQLLGQSDI 420


>gi|327482306|gb|AEA85616.1| GTP-binding protein HflX [Pseudomonas stutzeri DSM 4166]
          Length = 433

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           + ++G++NAGKS+LFNAL + +V     +  T    L  ++L+  G ++ ++DT G IR 
Sbjct: 201 VSLVGYTNAGKSTLFNALTESEVYAANQLFATLDPTLRRLELEDVGPVI-LADTVGFIRH 259

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
               +  E  + T  E  NADL+L
Sbjct: 260 LPHKL-VESFRATLEESSNADLLL 282


>gi|325264759|ref|ZP_08131488.1| ribosome biogenesis GTP-binding protein YsxC [Clostridium sp. D5]
 gi|324030051|gb|EGB91337.1| ribosome biogenesis GTP-binding protein YsxC [Clostridium sp. D5]
          Length = 200

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +I   G SN GKSSL NAL  +K  A ++  PG T+ +   +++ E YLV
Sbjct: 25  EIAFAGKSNVGKSSLINALMNRKSYARISATPGKTQTINFYNINEEMYLV 74


>gi|317418963|emb|CBN81001.1| Guanine nucleotide binding protein-like 3 [Dicentrarchus labrax]
          Length = 553

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + ++G  N GKSSL N+L +     V   PG T+ +  + LD     +K+ D  
Sbjct: 249 IKTAITVGVVGFPNVGKSSLINSLKRARACSVGATPGVTKCLQEVHLDKH---IKLLDCP 305

Query: 276 GIRETDDIVEKEGIKRTFLEVEN 298
           GI       +   I R  +++E 
Sbjct: 306 GIVMATSTTDAAMILRNCVKIEQ 328


>gi|309803256|ref|ZP_07697353.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 11V1-d]
 gi|309807561|ref|ZP_07701513.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 01V1-a]
 gi|308164764|gb|EFO67014.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 11V1-d]
 gi|308169167|gb|EFO71233.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 01V1-a]
          Length = 300

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + ++G  N GKS+L N L  + VAI+++ P TTR+ ++     +   +   DT GI +  
Sbjct: 11  VALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIFIDTPGIHKPK 70

Query: 281 ---DDIVEK 286
              DD ++K
Sbjct: 71  NNLDDFMDK 79


>gi|169824433|ref|YP_001692044.1| GTP-binding protein [Finegoldia magna ATCC 29328]
 gi|167831238|dbj|BAG08154.1| GTP-binding protein [Finegoldia magna ATCC 29328]
          Length = 294

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           + ++G SN GKS+L N +  + + I++D P TTR+ + +    E       DT GI+
Sbjct: 7   VSVIGRSNVGKSTLLNRVLGEKLTIISDKPQTTRNKIQLIYTDENMQAIFLDTPGIQ 63


>gi|159477825|ref|XP_001697009.1| hypothetical protein CHLREDRAFT_150723 [Chlamydomonas reinhardtii]
 gi|158274921|gb|EDP00701.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 276

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 18/118 (15%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDV--LTID-----LDLEGYLVKIS 272
           +  ++G SN GKSSL N +  +KD+A+V+  PG T+ +    I+     +DL GY     
Sbjct: 85  EFAVIGRSNVGKSSLINMITGRKDLALVSKEPGKTKCINHFIINENWYLVDLPGYGFAKV 144

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
              G ++ D        K  F    N  ++LLL + + K     P+ ID  +    +D
Sbjct: 145 GFQGRQQFDTFT-----KEYFNTRPNLAMVLLLVDASIK-----PQRIDLEYANWLTD 192


>gi|146318021|ref|YP_001197733.1| GTPase [Streptococcus suis 05ZYH33]
 gi|145688827|gb|ABP89333.1| Predicted GTPase [Streptococcus suis 05ZYH33]
          Length = 212

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDL 262
           R G  + ++G +N GKS+L NA+ +     KDV   +  PGTT D + I L
Sbjct: 161 RKGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPL 211


>gi|139438676|ref|ZP_01772160.1| Hypothetical protein COLAER_01161 [Collinsella aerofaciens ATCC
           25986]
 gi|133775756|gb|EBA39576.1| Hypothetical protein COLAER_01161 [Collinsella aerofaciens ATCC
           25986]
          Length = 317

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIV-----TDIPGTTRDVLTIDLDLEGYLVKISD 273
           G   +ILG S AGKS+L NAL   D          D  G    V  + + L G    I+D
Sbjct: 176 GSCAMILGESGAGKSTLLNALLGHDTLATGGVRERDDQGRHTTVARVMVALPGDAGVIAD 235

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENA 299
             G+R    +  + G+ R F E+  A
Sbjct: 236 APGLRSLPLVGHERGLARAFPEIVEA 261


>gi|145481545|ref|XP_001426795.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393872|emb|CAK59397.1| unnamed protein product [Paramecium tetraurelia]
          Length = 624

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I ++G+ N GKSS+ NA+  K +  V   PG T+   TI   LE YL+ + D  G+
Sbjct: 345 IGMVGYPNVGKSSVINAICNKKLVGVAARPGKTKHFQTI--PLEKYLL-LCDCPGL 397


>gi|315166303|gb|EFU10320.1| ribosome biogenesis GTPase YqeH [Enterococcus faecalis TX1302]
          Length = 369

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R    + ++G +N GKS+L N + +     +DV   +  PGTT D + I LD   +L
Sbjct: 159 EKYREDRDVYVVGVTNVGKSTLINQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFL 218

Query: 269 VKISDTAGI 277
           +   DT GI
Sbjct: 219 I---DTPGI 224


>gi|310822303|ref|YP_003954661.1| GTP-binding protein, EngB-like protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395375|gb|ADO72834.1| GTP-binding protein, EngB-like protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 206

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 5/61 (8%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTR--DVLTIDLDLEGYL--VKISDTA 275
           ++  +G SN GKSS+ N L  +K +  V++ PG TR  +   ++LD +G+   V+++D  
Sbjct: 26  EVAFVGRSNVGKSSMINTLTGRKKLVRVSNTPGRTRTLNFFDVELDRDGHRHQVRLADLP 85

Query: 276 G 276
           G
Sbjct: 86  G 86


>gi|302380500|ref|ZP_07268965.1| GTP-binding protein Era [Finegoldia magna ACS-171-V-Col3]
 gi|302311443|gb|EFK93459.1| GTP-binding protein Era [Finegoldia magna ACS-171-V-Col3]
          Length = 294

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           + ++G SN GKS+L N +  + + I++D P TTR+ + +    E       DT GI+
Sbjct: 7   VSVIGRSNVGKSTLLNRVLGEKLTIISDKPQTTRNKIQLIYTDENMQAIFLDTPGIQ 63


>gi|209880447|ref|XP_002141663.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209557269|gb|EEA07314.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
          Length = 463

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKSSL N+L +     +    G TR +  IDLD    LV   D+ G+  T + 
Sbjct: 281 IIGYPNVGKSSLVNSLKRSCSVKIGATAGITRQLQYIDLDSTTQLV---DSPGVVFTGNS 337

Query: 284 VEKEGIKRTFLEVENA 299
            +   I R  +++ N 
Sbjct: 338 TDPINILRNTVQLTNV 353


>gi|197302447|ref|ZP_03167502.1| hypothetical protein RUMLAC_01175 [Ruminococcus lactaris ATCC
           29176]
 gi|197298345|gb|EDY32890.1| hypothetical protein RUMLAC_01175 [Ruminococcus lactaris ATCC
           29176]
          Length = 200

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +I   G SN GKSSL NAL  +K  A ++  PG T+ +   +++ E YLV
Sbjct: 25  EIAFAGKSNVGKSSLINALMNRKSYARISATPGKTQTINFYNINDEMYLV 74


>gi|261409770|ref|YP_003246011.1| GTPase EngC [Paenibacillus sp. Y412MC10]
 gi|261286233|gb|ACX68204.1| GTPase EngC [Paenibacillus sp. Y412MC10]
          Length = 369

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 16/105 (15%)

Query: 203 ISSHISQGK--LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------P 251
           +SS +  GK  LGE +  G  + I G S AGKS+L N L+ +++  V  I          
Sbjct: 184 VSSLMDLGKEQLGEYLVQGKTVAITGTSGAGKSTLLNWLSGQEMQRVQGIREEDARGRHT 243

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
            T R++      L G  + + DT G+RE      +EG + TF ++
Sbjct: 244 TTHRELFV----LPGGAIMV-DTPGMRELQLWDSEEGFEATFADI 283


>gi|167767681|ref|ZP_02439734.1| hypothetical protein CLOSS21_02216 [Clostridium sp. SS2/1]
 gi|167710698|gb|EDS21277.1| hypothetical protein CLOSS21_02216 [Clostridium sp. SS2/1]
 gi|291560815|emb|CBL39615.1| GTP-binding protein Era [butyrate-producing bacterium SSC/2]
          Length = 301

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           +  +G  N GKS+L N L  + +AI +  P TTR+ + T+  D  G ++ + DT GI + 
Sbjct: 10  VTFIGRPNVGKSTLMNRLIGQKIAITSSKPQTTRNRIQTVYTDERGQIIFL-DTPGINKA 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + +    ++     +   D++L L E
Sbjct: 69  KNKLGNYMLQVAERTLNEVDVVLWLVE 95


>gi|167623684|ref|YP_001673978.1| GTP-binding protein HSR1-like [Shewanella halifaxensis HAW-EB4]
 gi|167353706|gb|ABZ76319.1| GTP-binding protein HSR1-related [Shewanella halifaxensis HAW-EB4]
          Length = 538

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 14/93 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV +G +NAGKSS+ N L K+ VA V  +P T  D  T+      Y  +++DT  +R  
Sbjct: 290 RIVAVGQTNAGKSSIINVLNKELVAEVDILPST--DTSTV------YSARVNDTE-VRVV 340

Query: 281 DDIVEKEGIKRT----FLEVENADLILLLKEIN 309
            D+   +G K+T      E+  ADLIL   + N
Sbjct: 341 -DVKGLDGNKQTESQMLEEMVQADLILWALKAN 372


>gi|150401617|ref|YP_001325383.1| GTP-binding protein HSR1-related [Methanococcus aeolicus Nankai-3]
 gi|150014320|gb|ABR56771.1| GTP-binding protein HSR1-related [Methanococcus aeolicus Nankai-3]
          Length = 379

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 8/85 (9%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L++DI  ++   K+ E      K+ ++G+ N GKSSL NAL  K  A+     G T+  
Sbjct: 98  ILRDDIKYYLQINKINE-----GKVGVVGYPNVGKSSLINALTGKTSALSGLTAGLTKGE 152

Query: 258 LTIDLDLEGYLVKISDTAGIRETDD 282
             I L  +   +K+ DT G+ E  D
Sbjct: 153 QWIKLTKK---IKLLDTPGVIEPKD 174


>gi|118444919|ref|YP_878859.1| ribosome biogenesis GTP-binding protein YsxC [Clostridium novyi NT]
 gi|166225951|sp|A0Q2K7|ENGB_CLONN RecName: Full=Probable GTP-binding protein EngB
 gi|118135375|gb|ABK62419.1| GTP-binding protein [Clostridium novyi NT]
          Length = 200

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           + N  ++  +G SNAGKSSL N +  ++ +A  +  PG TR +    ++ E Y V
Sbjct: 20  VDNRVEMAFVGRSNAGKSSLINVITNRRKLAKTSSTPGKTRQINFFLINNEFYFV 74


>gi|317495782|ref|ZP_07954145.1| ribosome biogenesis GTP-binding protein YlqF [Gemella moribillum
           M424]
 gi|316913959|gb|EFV35442.1| ribosome biogenesis GTP-binding protein YlqF [Gemella moribillum
           M424]
          Length = 292

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           I+  +++G     IR+    +++G  N GKS+  N L KK+VA   + PG T+    + L
Sbjct: 108 IARQVAKGIKPRAIRS----MVIGVPNVGKSTFINKLIKKNVANTANKPGVTKKQQWLKL 163

Query: 263 DLEGYLVKISDTAGI 277
           + +   +++ DT GI
Sbjct: 164 NKD---IELLDTPGI 175


>gi|261820689|ref|YP_003258795.1| GTP-binding protein HSR1-related protein [Pectobacterium wasabiae
           WPP163]
 gi|261604702|gb|ACX87188.1| GTP-binding protein HSR1-related protein [Pectobacterium wasabiae
           WPP163]
          Length = 291

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           +S  VL D L  +  +  HI Q     +I+    I I+G +  GKSSL NAL + +V+ V
Sbjct: 12  ASLSVLPDSLHQR--VIDHIEQ-----LIQYEPVIGIMGKTGVGKSSLCNALFQGEVSPV 64

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           +D    TR  LT  L      +   D  G+ E+++
Sbjct: 65  SDSRACTRHALTFRLSSGQRSILFVDLPGVGESEE 99


>gi|256396187|ref|YP_003117751.1| GTP-binding proten HflX [Catenulispora acidiphila DSM 44928]
 gi|256362413|gb|ACU75910.1| GTP-binding proten HflX [Catenulispora acidiphila DSM 44928]
          Length = 502

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +V+ G++NAGKSS+ N L    V +   +  T    +       G    +SDT G     
Sbjct: 282 VVLAGYTNAGKSSILNRLTGAGVLVENALFATLDPTVRRTETASGRAYTLSDTVGFVRHL 341

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK---------NIDFIFIGTKS 329
                E  + T  EV  +DL+L + +    + + +IS  +         ++  + +  K+
Sbjct: 342 PHQLVEAFRSTLEEVGESDLVLHVVDASDEDPEGQISAVRAVFADMGAGDVKELMVLNKA 401

Query: 330 DLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           DL            E +  ++S+ TGEG++ L++ I+  L     +L   +P
Sbjct: 402 DLADPEVLARLLRHEPHSIIVSARTGEGIDHLLSAIERDLPRPGVELEALVP 453


>gi|209695942|ref|YP_002263872.1| GTP-binding protein Era [Aliivibrio salmonicida LFI1238]
 gi|208009895|emb|CAQ80208.1| GTP-binding protein era [Aliivibrio salmonicida LFI1238]
          Length = 321

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  + + +D EG Y     DT G+   
Sbjct: 30  IAIVGRPNVGKSTLLNQILGQKISITSRKPQTTRHRI-MGVDTEGDYQAIYIDTPGLH-- 86

Query: 281 DDIVEKEGIKR 291
             I EK  I R
Sbjct: 87  --IEEKRAINR 95


>gi|195038694|ref|XP_001990790.1| GH18066 [Drosophila grimshawi]
 gi|193894986|gb|EDV93852.1| GH18066 [Drosophila grimshawi]
          Length = 581

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+   ++ ++G  N GKSS+ N+L +    +V   PG T+ +  ++LD +   +K+ D  
Sbjct: 264 IKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKAMQEVELDSK---IKLIDCP 320

Query: 276 GI 277
           GI
Sbjct: 321 GI 322


>gi|163868472|ref|YP_001609681.1| GTP-binding protein HflX [Bartonella tribocorum CIP 105476]
 gi|161018128|emb|CAK01686.1| GTP-binding protein HflX [Bartonella tribocorum CIP 105476]
          Length = 445

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 102/259 (39%), Gaps = 30/259 (11%)

Query: 152 GELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND-ILFLKNDISSHISQG 210
             LS   G+ +   TH+              + Q  + + +L + I+ ++ ++ + +   
Sbjct: 146 AHLSYQKGRLVRSWTHLERQRGGRGFLGGPGETQIEADRRLLQEKIIRIRRELETVVKTR 205

Query: 211 KLGEIIR--NGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            L    R    Y +V L G++NAGKS+LFN L+  DV     +  T    L   +   G 
Sbjct: 206 ALHRAKRKKTSYPVVALVGYTNAGKSTLFNRLSGADVLAKNMLFATLDPTLRKVVLPHGK 265

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK---------------EINSKK 312
            + +SDT G             + T  EV  ADLIL ++               E+ S  
Sbjct: 266 TILLSDTVGFISNLPTNLIAAFRATLEEVVEADLILHVRDMLDLDHRTHAQDVLEVLSSL 325

Query: 313 EISFPKNIDFIFIGTKSDLY----------STYTEEYDHLI-SSFTGEGLEELINKIKSI 361
           +I        I +  K D+           S  T     LI S+  G+GL++L+  I+  
Sbjct: 326 DIDIDDTEHIIEVWNKIDMVDEQALNVLQTSAKTRLNPALIVSALKGDGLDQLLKTIEKR 385

Query: 362 LSNKFKKLPFSIPSHKRHL 380
           +  + + + + +  H+  L
Sbjct: 386 IFGELQSIEYLLKPHEMSL 404


>gi|158296783|ref|XP_317131.4| AGAP008330-PA [Anopheles gambiae str. PEST]
 gi|157014877|gb|EAA12421.4| AGAP008330-PA [Anopheles gambiae str. PEST]
          Length = 587

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 17/120 (14%)

Query: 159 GQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN 218
           G W  K+   R+    ++D  E+E + +  + E   D  F       H+         +N
Sbjct: 299 GSWEQKILEERN-APMEVDGDEDEKLVSERTHEEEKDFAF-----EEHVK-------FKN 345

Query: 219 GY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           G   I  +G+ N GKSSL NA+  + V  V+  PG T+   TI L      V++ D  G+
Sbjct: 346 GVLTIGCVGYPNVGKSSLLNAVMGRKVVSVSRTPGHTKHFQTIFL---TNTVRLCDCPGL 402


>gi|256061194|ref|ZP_05451346.1| GTP1/OBG [Brucella neotomae 5K33]
 gi|261325201|ref|ZP_05964398.1| GTP-binding protein [Brucella neotomae 5K33]
 gi|261301181|gb|EEY04678.1| GTP-binding protein [Brucella neotomae 5K33]
          Length = 472

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 30/174 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 235 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLRRIRLPHGETVILSDTVGFISN 293

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  ADLIL +++I+     +  ++++ I   +G +   ++   E 
Sbjct: 294 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 353

Query: 339 YDHL--------------------------ISSFTGEGLEELINKIKSILSNKF 366
           ++ +                          +S+ TGEG++ L++ I++ ++   
Sbjct: 354 WNKIDNLDESAREAALRLAAAGSEEGRPIPVSAITGEGVDRLLSLIETRIAGAL 407


>gi|254520127|ref|ZP_05132183.1| GTPase EngB [Clostridium sp. 7_2_43FAA]
 gi|226913876|gb|EEH99077.1| GTPase EngB [Clostridium sp. 7_2_43FAA]
          Length = 201

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 10/63 (15%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR--DVLTID------LDLEGY-LVKI 271
           I  +G SN GKSS+ NAL  +K +A V+  PG TR  +   I+      +DL GY   K+
Sbjct: 27  IAFVGRSNVGKSSIINALTNRKKLAKVSQTPGKTRLINFFIINGDEFYLVDLPGYGYAKV 86

Query: 272 SDT 274
           S T
Sbjct: 87  SKT 89


>gi|225852611|ref|YP_002732844.1| GTP-binding proten HflX [Brucella melitensis ATCC 23457]
 gi|256113667|ref|ZP_05454478.1| GTP-binding proten HflX [Brucella melitensis bv. 3 str. Ether]
 gi|256263896|ref|ZP_05466428.1| GTP-binding protein [Brucella melitensis bv. 2 str. 63/9]
 gi|265995027|ref|ZP_06107584.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|225640976|gb|ACO00890.1| GTP-binding proten HflX [Brucella melitensis ATCC 23457]
 gi|262766140|gb|EEZ11929.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263094028|gb|EEZ17962.1| GTP-binding protein [Brucella melitensis bv. 2 str. 63/9]
 gi|326409130|gb|ADZ66195.1| GTP-binding proten HflX [Brucella melitensis M28]
 gi|326538838|gb|ADZ87053.1| GTP-binding proten HflX [Brucella melitensis M5-90]
          Length = 472

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 30/174 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 235 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLRRIRLPHGETVILSDTVGFISN 293

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  ADLIL +++I+     +  ++++ I   +G +   ++   E 
Sbjct: 294 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 353

Query: 339 YDHL--------------------------ISSFTGEGLEELINKIKSILSNKF 366
           ++ +                          +S+ TGEG++ L++ I++ ++   
Sbjct: 354 WNKIDNLDESAREAALRLAAAGSEEGRPIPVSAITGEGVDRLLSLIETRIAGAL 407


>gi|147775210|emb|CAN68109.1| hypothetical protein VITISV_000763 [Vitis vinifera]
          Length = 530

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 29/219 (13%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-------DLEGYLVKISDTAGI 277
           +G+ N GKSS+ N L  K+V  V  IPG T+    I L       D  G + + SD+   
Sbjct: 312 VGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNSDS--- 368

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
            ET D+V K  ++ T LE  +  +  +LK +  KKE     +++  +     D  + +  
Sbjct: 369 -ET-DVVLKGVVRVTNLEDASEHIGEVLKRV--KKE-----HLERAYKIKDWDDENDFLV 419

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           +   L       G  +L+   K +L +  + ++PF +P  ++     S     L +    
Sbjct: 420 QLCKLTGKLLKGGEPDLMTVAKMVLHDWQRGRIPFFVPPPRQQEGDSSDEPSTLGV---- 475

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435
           EKD  +D   +N   AS ++  I   +  +Q +++   K
Sbjct: 476 EKDTAVD---DN--QASAAIRAIANVISSQQTMNVPVQK 509


>gi|51573469|gb|AAU07494.1| conserved hypothetical GTP-binding protein [Borrelia garinii PBi]
          Length = 268

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           K++I+G  N GKSS+ N L+ K  A V + PG T+++  + ++ E   + + D  GI
Sbjct: 108 KVLIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKINEE---INLFDMPGI 161


>gi|23501988|ref|NP_698115.1| GTP-binding protein [Brucella suis 1330]
 gi|23347938|gb|AAN30030.1| GTP-binding protein, putative [Brucella suis 1330]
          Length = 472

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 30/174 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 235 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLRRIRLPHGETVILSDTVGFISN 293

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  ADLIL +++I+     +  ++++ I   +G +   ++   E 
Sbjct: 294 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 353

Query: 339 YDHL--------------------------ISSFTGEGLEELINKIKSILSNKF 366
           ++ +                          +S+ TGEG++ L++ I++ ++   
Sbjct: 354 WNKIGNLDESAREAALRLAAAGSEEGRPIPVSAITGEGVDRLLSLIETRIAGAL 407


>gi|62290025|ref|YP_221818.1| GTP-binding protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699952|ref|YP_414526.1| ATP/GTP-binding domain-containing protein [Brucella melitensis
           biovar Abortus 2308]
 gi|189024265|ref|YP_001935033.1| GTP1/OBG [Brucella abortus S19]
 gi|254689337|ref|ZP_05152591.1| GTP1/OBG [Brucella abortus bv. 6 str. 870]
 gi|254697470|ref|ZP_05159298.1| GTP1/OBG [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730367|ref|ZP_05188945.1| GTP1/OBG [Brucella abortus bv. 4 str. 292]
 gi|256257583|ref|ZP_05463119.1| GTP1/OBG [Brucella abortus bv. 9 str. C68]
 gi|260546577|ref|ZP_05822316.1| GTP1/OBG [Brucella abortus NCTC 8038]
 gi|260754853|ref|ZP_05867201.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260758070|ref|ZP_05870418.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260761894|ref|ZP_05874237.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883865|ref|ZP_05895479.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|62196157|gb|AAX74457.1| GTP-binding protein, hypothetical [Brucella abortus bv. 1 str.
           9-941]
 gi|82616053|emb|CAJ11089.1| ATP/GTP-binding site motif A (P-loop):GTP1/OBG [Brucella melitensis
           biovar Abortus 2308]
 gi|189019837|gb|ACD72559.1| GTP1/OBG [Brucella abortus S19]
 gi|260095627|gb|EEW79504.1| GTP1/OBG [Brucella abortus NCTC 8038]
 gi|260668388|gb|EEX55328.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260672326|gb|EEX59147.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674961|gb|EEX61782.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260873393|gb|EEX80462.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
          Length = 472

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 30/174 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 235 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLRRIRLPHGETVILSDTVGFISN 293

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  ADLIL +++I+     +  ++++ I   +G +   ++   E 
Sbjct: 294 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 353

Query: 339 YDHL--------------------------ISSFTGEGLEELINKIKSILSNKF 366
           ++ +                          +S+ TGEG++ L++ I++ ++   
Sbjct: 354 WNKIDNLDESAREAALRLAAVGSEEGRPIPVSAITGEGVDRLLSLIETRIAGAL 407


>gi|50285789|ref|XP_445323.1| hypothetical protein [Candida glabrata CBS 138]
 gi|52783193|sp|Q6FWS1|NOG2_CANGA RecName: Full=Nucleolar GTP-binding protein 2
 gi|49524627|emb|CAG58229.1| unnamed protein product [Candida glabrata]
          Length = 494

 Score = 37.0 bits (84), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+
Sbjct: 313 RKQISVGFIGYPNTGKSSIINTLRKKKVCQVAPIPGETK 351


>gi|319947214|ref|ZP_08021448.1| GTP-binding protein HflX [Streptococcus australis ATCC 700641]
 gi|319747262|gb|EFV99521.1| GTP-binding protein HflX [Streptococcus australis ATCC 700641]
          Length = 416

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           +KI ++G++NAGKS++ NAL  K      D    T D  T  + L G L V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNALTSK-AQYEADELFATLDATTKSIHLTGNLQVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELVTSFKSTLEESKNVDLLV 282


>gi|299822890|ref|ZP_07054776.1| GTP-binding protein Era [Listeria grayi DSM 20601]
 gi|299816419|gb|EFI83657.1| GTP-binding protein Era [Listeria grayi DSM 20601]
          Length = 301

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 9/98 (9%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGY 267
           + E  ++G+ + I+G  N GKS+L N +  + +AI++D   TTR+    V T D   E  
Sbjct: 1   MTETFKSGF-VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTD---ESQ 56

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           ++ I DT GI +    +    +K  F   +  DLI  +
Sbjct: 57  IIFI-DTPGIHKPKHKLGDFMVKIAFNTFQEVDLIYFV 93


>gi|302541783|ref|ZP_07294125.1| ribosome small subunit-dependent GTPase A [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459401|gb|EFL22494.1| ribosome small subunit-dependent GTPase A [Streptomyces
           himastatinicus ATCC 53653]
          Length = 248

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 14/84 (16%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRDVLTIDLDLEGYLVKISD 273
           V+LG S AGKS+L NAL  +DV  V  I           TTR++L   L   G L+   D
Sbjct: 85  VLLGQSGAGKSTLANALVGEDVQDVRTIRDSDGKGRHTTTTRNLLP--LPSGGALI---D 139

Query: 274 TAGIRETDDIVEKEGIKRTFLEVE 297
           T G+R       + G+ + F E+E
Sbjct: 140 TPGLRGVGLWDAEGGVSQAFAEIE 163


>gi|261405558|ref|YP_003241799.1| ribosome biogenesis GTPase YqeH [Paenibacillus sp. Y412MC10]
 gi|261282021|gb|ACX63992.1| ribosome biogenesis GTPase YqeH [Paenibacillus sp. Y412MC10]
          Length = 375

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R    + ++G +N GKSSL N L +          V+  PGTT D++ I LD   Y++  
Sbjct: 164 RGDRDVYVVGATNVGKSSLINRLIRDYSDLDQELTVSRYPGTTLDMVNIPLDDGRYII-- 221

Query: 272 SDTAGI 277
            DT GI
Sbjct: 222 -DTPGI 226


>gi|154483368|ref|ZP_02025816.1| hypothetical protein EUBVEN_01071 [Eubacterium ventriosum ATCC
           27560]
 gi|149735878|gb|EDM51764.1| hypothetical protein EUBVEN_01071 [Eubacterium ventriosum ATCC
           27560]
          Length = 856

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRE 279
           KI + G+ N+GK++LFN L   +   V + PG T  V   +  L+G+  V I+D  GI  
Sbjct: 25  KIALAGNPNSGKTTLFNGLTGSN-QFVGNWPGVT--VEKKEGKLKGHKDVTITDLPGIYS 81

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                 +E + R +L  E  D+IL
Sbjct: 82  LSPYTLEEVVARNYLINEKPDVIL 105


>gi|114643797|ref|XP_520767.2| PREDICTED: RAS-like, estrogen-regulated, growth inhibitor isoform 3
           [Pan troglodytes]
 gi|114643799|ref|XP_001158839.1| PREDICTED: RAS-like, estrogen-regulated, growth inhibitor isoform 1
           [Pan troglodytes]
 gi|114643801|ref|XP_001158883.1| PREDICTED: ras-related and estrogen-regulated growth inhibitor
           isoform 2 [Pan troglodytes]
          Length = 199

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 31/154 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           K+ I G +  GKS+L      K      D  +  T R   TID ++    ++I DTAG  
Sbjct: 8   KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVS--MEILDTAG-- 63

Query: 279 ETDDIVEKEGIKRT---FLEVENA------DLILLLKEINSKKEISFPKNIDFIFIGTKS 329
             +D +++EG  R    F+ V +       + +L LK I    E+  PKN+  I +G K+
Sbjct: 64  -QEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILD--EVKKPKNVTLILVGNKA 120

Query: 330 DL---YSTYTEEYDHL----------ISSFTGEG 350
           DL       TEE + L           S+ TGEG
Sbjct: 121 DLDHSRQVSTEEGEKLATELACAFYECSACTGEG 154


>gi|67906566|gb|AAY82672.1| predicted GTP-binding protein Era [uncultured bacterium
           MedeBAC49C08]
          Length = 300

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G +N GKS+L N + ++ +AI +  P TTR+ +    + E       DT G+    
Sbjct: 7   ISIVGKTNVGKSTLLNKILERKLAITSRKPQTTRNRILGAWNHEDMQAIFLDTPGVHTG- 65

Query: 282 DIVEKEGIKRTFLEV-----ENADLILLL 305
               K+ + +   +V     +N DLIL +
Sbjct: 66  ---HKKALNKYMNQVAMHALKNVDLILFI 91


>gi|42527400|ref|NP_972498.1| GTP-binding protein Era [Treponema denticola ATCC 35405]
 gi|81411958|sp|Q73LG9|ERA_TREDE RecName: Full=GTPase Era
 gi|41817985|gb|AAS12409.1| GTP-binding protein Era [Treponema denticola ATCC 35405]
          Length = 294

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280
           + I+G  +AGKS+  N  + + V+IV+ IP TTR+ +  I    +G +V I DT G  ++
Sbjct: 6   VTIIGRPSAGKSTFLNTASGEKVSIVSAIPQTTRNAIRGIVNTTKGQIVFI-DTPGYHKS 64

Query: 281 DDI--VEKEGIKRTFLEVENADLILL 304
           +    ++ + I +T LE  +A L L+
Sbjct: 65  EKKLNLKLQEIAKTRLEEGDAVLYLI 90


>gi|75447828|sp|Q8GNS3|FEOB_LEGPN RecName: Full=Ferrous iron transport protein B
 gi|23305590|gb|AAN17185.1|AF492466_3 ferrous iron transporter B [Legionella pneumophila 130b]
 gi|307611534|emb|CBX01211.1| ferrous iron transporter B [Legionella pneumophila 130b]
          Length = 751

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           +++G+ N GK++LFNAL   +   V + PG T +  T +  L  +L++I+D  G+     
Sbjct: 5   LLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSL-- 61

Query: 283 IVEKEGIKR 291
           +   EGI +
Sbjct: 62  VANAEGISQ 70


>gi|332705058|ref|ZP_08425143.1| GTP-binding protein Era [Lyngbya majuscula 3L]
 gi|332356235|gb|EGJ35690.1| GTP-binding protein Era [Lyngbya majuscula 3L]
          Length = 338

 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 218 NGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +G+K   + I+G  N GKS+L N L  + +AI + +  TTR+ L   L      +   DT
Sbjct: 40  DGFKSGFVAIVGRPNVGKSTLMNKLVGQKIAITSPVAQTTRNRLRGILTTPEAQLIFVDT 99

Query: 275 AGIRETDDIVEKEGIKRTFLEVE 297
            GI +    + K  +K   + +E
Sbjct: 100 PGIHKPHHQLGKVLVKNAQIAIE 122


>gi|307634786|gb|ADI83852.2| GTPase, HflX subfamily [Geobacter sulfurreducens KN400]
          Length = 555

 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 219 GYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAG 276
           G  IV I+G++NAGKS+L NAL K DV    ++   T D  T  L       V I+DT G
Sbjct: 370 GLPIVSIVGYTNAGKSTLLNALTKSDV-FTENLLFATLDTSTRRLRFPREREVIITDTVG 428

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
              +         K T  E+++ADL+L L
Sbjct: 429 FIRSLPASLLGAFKATLEELQDADLLLHL 457


>gi|256369537|ref|YP_003107047.1| GTP-binding protein, putative [Brucella microti CCM 4915]
 gi|255999699|gb|ACU48098.1| GTP-binding protein, putative [Brucella microti CCM 4915]
          Length = 472

 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 30/174 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 235 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLRRIRLPHGETVILSDTVGFISN 293

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  ADLIL +++I+     +  ++++ I   +G +   ++   E 
Sbjct: 294 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 353

Query: 339 YDHL--------------------------ISSFTGEGLEELINKIKSILSNKF 366
           ++ +                          +S+ TGEG++ L++ I++ ++   
Sbjct: 354 WNKIDNLDESAREAALRLAAARSEEGRPIPVSAITGEGVDRLLSLIETRIAGAL 407


>gi|224090759|ref|XP_002191136.1| PREDICTED: similar to RAS and EF-hand domain containing
           [Taeniopygia guttata]
          Length = 721

 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 33/159 (20%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-------LDLEGYLVKI 271
            YKIV+ G +  GKSS      K       +  G T   L +D       +D E  ++++
Sbjct: 521 AYKIVLAGDAAVGKSSFLMRFCK------NEFQGNTSATLGVDFQMKRLIVDGEPTVLQL 574

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKN 319
            DTAG +E    + K   +R       AD +LLL ++  +K            E +  +N
Sbjct: 575 WDTAG-QERFRSIAKSYFRR-------ADGVLLLYDVTCEKSFINVREWVDMIEDATHEN 626

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           I  + +G K+DL     E+    +    GE L    N +
Sbjct: 627 IPIMIVGNKADLRQDVMEQGQKCVPINYGEKLAMTYNAL 665


>gi|126696804|ref|YP_001091690.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9301]
 gi|126543847|gb|ABO18089.1| GTP-binding protein ERA-like protein [Prochlorococcus marinus str.
           MIT 9301]
          Length = 303

 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + +LG  N GKS+L N L  + + I + I  TTR+ L   L  +   +   DT G
Sbjct: 5   RSGF-VTLLGRPNVGKSTLINKLIGEKITITSPIAQTTRNKLKGILTTDNGQIIFVDTPG 63

Query: 277 IRE 279
           + +
Sbjct: 64  VHK 66


>gi|54298647|ref|YP_125016.1| ferrous iron transporter B [Legionella pneumophila str. Paris]
 gi|81601657|sp|Q5X1N2|FEOB_LEGPA RecName: Full=Ferrous iron transport protein B
 gi|53752432|emb|CAH13864.1| ferrous iron transporter B [Legionella pneumophila str. Paris]
          Length = 751

 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           +++G+ N GK++LFNAL   +   V + PG T +  T +  L  +L++I+D  G+     
Sbjct: 5   LLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSL-- 61

Query: 283 IVEKEGIKR 291
           +   EGI +
Sbjct: 62  VANAEGISQ 70


>gi|53712710|ref|YP_098702.1| putative ferrous iron transport protein [Bacteroides fragilis
           YCH46]
 gi|60680869|ref|YP_211013.1| putative transmembrane ferrous transport fusion protein
           [Bacteroides fragilis NCTC 9343]
 gi|253563315|ref|ZP_04840772.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265762799|ref|ZP_06091367.1| ferrous iron transporter B [Bacteroides sp. 2_1_16]
 gi|52215575|dbj|BAD48168.1| putative ferrous iron transport protein [Bacteroides fragilis
           YCH46]
 gi|60492303|emb|CAH07068.1| putative transmembrane ferrous transport fusion protein
           [Bacteroides fragilis NCTC 9343]
 gi|251947091|gb|EES87373.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263255407|gb|EEZ26753.1| ferrous iron transporter B [Bacteroides sp. 2_1_16]
 gi|301162415|emb|CBW21960.1| putative transmembrane ferrous transport fusion protein
           [Bacteroides fragilis 638R]
          Length = 827

 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GK+SLFN LA      V +  G T D      D +GY  KI D  G
Sbjct: 109 RRTINVALVGNPNCGKTSLFN-LASGAHEHVGNYSGVTVDAKEGYFDFQGYHFKIVDLPG 167

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
                    +E   R  +  E  D+I+
Sbjct: 168 TYSLSAYTPEEIYVRRHIIDETPDVII 194


>gi|158313083|ref|YP_001505591.1| small GTP-binding protein [Frankia sp. EAN1pec]
 gi|158108488|gb|ABW10685.1| small GTP-binding protein [Frankia sp. EAN1pec]
          Length = 503

 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 35/180 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + I G++NAGKSSL N L    V    A+   +  T R     D    G +  ++DT G 
Sbjct: 287 VAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTVRRATLPD----GRIFTLADTVGF 342

Query: 277 IRE-TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSK--KEI 314
           +R     IV  E  + T  EV +ADL+L                   +L EI++    E+
Sbjct: 343 VRHLPHQIV--EAFRSTLEEVVDADLVLHVVDGSAPDPMGQISAVREVLAEIDAAGVPEL 400

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                +D +   T + L     +     +S+ +G GL+EL+  + + + +   ++   +P
Sbjct: 401 IVVNKVDAVDPTTLAVLRQAVPDAI--FVSARSGAGLQELVEALSARIPHPEVEMSLLVP 458


>gi|332232812|ref|XP_003265596.1| PREDICTED: LOW QUALITY PROTEIN: ras-related and estrogen-regulated
           growth inhibitor-like [Nomascus leucogenys]
          Length = 199

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 31/154 (20%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           K+ I G +  GKS+L      K      D  +  T R   TID ++    ++I DTAG  
Sbjct: 8   KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVS--MEILDTAG-- 63

Query: 279 ETDDIVEKEGIKRT---FLEVENA------DLILLLKEINSKKEISFPKNIDFIFIGTKS 329
             +D +++EG  R    F+ V +       + +L LK  N   EI  PKN+  I +G K+
Sbjct: 64  -QEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLK--NILDEIKKPKNVTLILVGNKA 120

Query: 330 DL---YSTYTEEYDHL----------ISSFTGEG 350
           DL       TEE + L           S+ TGEG
Sbjct: 121 DLDHSRQVSTEEGEKLATELACAFYXCSACTGEG 154


>gi|325193315|emb|CCA27658.1| guanine nucleotidebinding protein putative [Albugo laibachii Nc14]
          Length = 484

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +I ILG+ N GKS+L NAL K+ +  +  +  T +  +++  D    L+
Sbjct: 247 QIAILGYPNVGKSTLINALKKRQLVAINAVSYTRQQAISVPFDEYSVLI 295


>gi|282878064|ref|ZP_06286869.1| GTP-binding protein Era [Prevotella buccalis ATCC 35310]
 gi|281299804|gb|EFA92168.1| GTP-binding protein Era [Prevotella buccalis ATCC 35310]
          Length = 293

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTDDMQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  +  +   + +AD++L + ++    E    KN DF+
Sbjct: 69  MQEYMLAFSESALADADILLYVTDVVEDPE----KNADFL 104


>gi|255534186|ref|YP_003094557.1| GTP-binding protein HflX [Flavobacteriaceae bacterium 3519-10]
 gi|255340382|gb|ACU06495.1| GTP-binding protein HflX [Flavobacteriaceae bacterium 3519-10]
          Length = 403

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 16/115 (13%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYL 268
           G+++R      ++G++N GKS+L NA++K DV     +   +  T R V+  +L    +L
Sbjct: 197 GKVVRAA----LVGYTNVGKSTLMNAISKSDVFAENKLFATLDTTVRKVVIGNL---PFL 249

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
             ++DT G          E  K T  EV  ADL++ + +I+ +   SF  +ID +
Sbjct: 250 --LTDTVGFIRKLPTQLVESFKSTLDEVREADLLIHVVDISHE---SFEDHIDSV 299


>gi|229493118|ref|ZP_04386910.1| GTP-binding protein Era [Rhodococcus erythropolis SK121]
 gi|229319849|gb|EEN85678.1| GTP-binding protein Era [Rhodococcus erythropolis SK121]
          Length = 305

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    +AI +  P TTR  +   +  E   + + DT G
Sbjct: 7   RSGF-VCFVGRPNTGKSTLTNALVGSKIAITSSRPQTTRHTIRGIVHREHAQLILVDTPG 65

Query: 277 I 277
           +
Sbjct: 66  L 66


>gi|256821981|ref|YP_003145944.1| GTP-binding protein Era [Kangiella koreensis DSM 16069]
 gi|256795520|gb|ACV26176.1| GTP-binding protein Era [Kangiella koreensis DSM 16069]
          Length = 299

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 37/216 (17%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVK 270
           + E  R GY  V LG  N GKS+L N +  + V+I +  P TTR  +L I  D +  ++ 
Sbjct: 1   MHENFRCGYAAV-LGRPNVGKSTLMNHILGQKVSITSRKPQTTRHRILGIYTDDDAQILF 59

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLE---------------------VENADLILLLKEIN 309
           + DT GI +     E   I R                          E+ +L+L   +  
Sbjct: 60  V-DTPGIHKN----EARSINRYMNRAASSSMVDVDVVIFVIDGTQWTEDDELVLEKLQKT 114

Query: 310 SKKEISFPKNIDFIFIGTKSDL---YSTYTEEYDHLI----SSFTGEGLEELINKIKSIL 362
           + K I F   +D   I  K+ L    +  TE +D       S+  G+ LE L+ +IK  L
Sbjct: 115 NCKTILFVNKVD--KIQDKNQLLPHLAKITERFDFDAVFPGSALRGDNLEPLVKQIKEWL 172

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                  P    + +   +  ++ +R   M SL E+
Sbjct: 173 PKGDLFFPEDYVTDRSQRFMAAELIREKLMRSLGEE 208


>gi|226307218|ref|YP_002767178.1| GTP-binding protein Era [Rhodococcus erythropolis PR4]
 gi|226186335|dbj|BAH34439.1| probable GTP-binding protein Era [Rhodococcus erythropolis PR4]
          Length = 305

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    +AI +  P TTR  +   +  E   + + DT G
Sbjct: 7   RSGF-VCFVGRPNTGKSTLTNALVGSKIAITSSRPQTTRHTIRGIVHREHAQLILVDTPG 65

Query: 277 I 277
           +
Sbjct: 66  L 66


>gi|148908137|gb|ABR17184.1| unknown [Picea sitchensis]
          Length = 606

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I  LKN   SH         ++    + I+G  N GKSSL N++ +  V  V   PG TR
Sbjct: 254 IRLLKNYSRSHE--------LKTSITVGIVGLPNVGKSSLINSIKRSHVVNVGATPGLTR 305

Query: 256 DVLTIDLDLEGYLVKISDTAGI 277
            +  I LD     VK+ D  G+
Sbjct: 306 AMQEIQLDKH---VKLLDCPGV 324


>gi|75908055|ref|YP_322351.1| GTP-binding protein, HSR1-like [Anabaena variabilis ATCC 29413]
 gi|75701780|gb|ABA21456.1| GTP-binding protein, HSR1-related protein [Anabaena variabilis ATCC
           29413]
          Length = 528

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI-----PGTTR 255
           + + +H S+ +     R    + ++G++NAGKS+L NAL   +V     +     P T R
Sbjct: 336 DQLQAHRSRLRQRRQHREVPSVALVGYTNAGKSTLLNALTNAEVYTADQLFATLDPTTRR 395

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            V+      E   + I+DT G          +  + T  EV  AD +L L +++    +S
Sbjct: 396 LVIPHAETGEPQGILITDTVGFIHELPASLMDAFRATLEEVTEADALLHLVDLSHPAWLS 455

Query: 316 FPKNIDFIF 324
             + +  I 
Sbjct: 456 HIRAVREIL 464


>gi|327261931|ref|XP_003215780.1| PREDICTED: guanine nucleotide-binding protein-like 3-like
           protein-like [Anolis carolinensis]
          Length = 558

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++    + ++G  N GKSSL N+L +     V   PG T+ +  + LD     +KI D  
Sbjct: 237 VKTAITVGVVGFPNVGKSSLINSLKRSRACSVGATPGVTKCLQEVHLDKH---IKILDCP 293

Query: 276 GI 277
           GI
Sbjct: 294 GI 295


>gi|305432967|ref|ZP_07402125.1| GTP-binding protein [Campylobacter coli JV20]
 gi|304444121|gb|EFM36776.1| GTP-binding protein [Campylobacter coli JV20]
          Length = 728

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           + I I G  N+GKSSL NAL K+D   V++IP T 
Sbjct: 163 FNIAITGVMNSGKSSLLNALLKEDFLGVSNIPETA 197


>gi|227824784|ref|ZP_03989616.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905283|gb|EEH91201.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 290

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 216 IRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +RN   +I+I+G  N GKS+L N +  K+ A   + PG TR+   +++   G  +++ DT
Sbjct: 125 VRNHPIRIMIVGIPNVGKSTLINRILGKNKAAAQNRPGVTRNTQWVEI---GKNLELLDT 181

Query: 275 AGI 277
            G+
Sbjct: 182 PGV 184


>gi|288575669|ref|ZP_05977403.2| GTP-binding protein HflX [Neisseria mucosa ATCC 25996]
 gi|288567459|gb|EFC89019.1| GTP-binding protein HflX [Neisseria mucosa ATCC 25996]
          Length = 373

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G++NAGKSSLFN L K DV          +D L   LD     + +S  AG+  TD 
Sbjct: 200 AIVGYTNAGKSSLFNRLTKADV--------LAKDQLFATLDTTARRLFLSHEAGVILTDT 251

Query: 283 I 283
           +
Sbjct: 252 V 252


>gi|225466135|ref|XP_002268388.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296084222|emb|CBI24610.3| unnamed protein product [Vitis vinifera]
          Length = 564

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL----AKKDV---------AIVTDIPGTTRDVLTIDLD 263
           + G  + ILG +N GKS+  NAL    A++D           I + +PGTT   + ID  
Sbjct: 278 KKGRNVYILGSANVGKSAFINALLKMMAQRDPAAAAAQRYKPIQSAVPGTTLGPIQIDAF 337

Query: 264 LEGYLVKISDTAGI 277
           L G   K+ DT G+
Sbjct: 338 LGGG--KLYDTPGV 349


>gi|161619062|ref|YP_001592949.1| GTP-binding protein HSR1-related [Brucella canis ATCC 23365]
 gi|163843379|ref|YP_001627783.1| GTP-binding protein HSR1-related [Brucella suis ATCC 23445]
 gi|260566354|ref|ZP_05836824.1| GTP1/OBG protein [Brucella suis bv. 4 str. 40]
 gi|161335873|gb|ABX62178.1| GTP-binding protein HSR1-related [Brucella canis ATCC 23365]
 gi|163674102|gb|ABY38213.1| GTP-binding protein HSR1-related [Brucella suis ATCC 23445]
 gi|260155872|gb|EEW90952.1| GTP1/OBG protein [Brucella suis bv. 4 str. 40]
          Length = 472

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 30/174 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 235 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLRRIRLPHGETVILSDTVGFISN 293

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  ADLIL +++I+     +  ++++ I   +G +   ++   E 
Sbjct: 294 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 353

Query: 339 YDHL--------------------------ISSFTGEGLEELINKIKSILSNKF 366
           ++ +                          +S+ TGEG++ L++ I++ ++   
Sbjct: 354 WNKIDNLDESAREAALRLAAAGSEEGRPIPVSAITGEGVDRLLSLIETRIAGAL 407


>gi|254373002|ref|ZP_04988491.1| ATP/GTP-binding protein [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254374451|ref|ZP_04989933.1| hypothetical protein FTDG_00620 [Francisella novicida GA99-3548]
 gi|151570729|gb|EDN36383.1| ATP/GTP-binding protein [Francisella novicida GA99-3549]
 gi|151572171|gb|EDN37825.1| hypothetical protein FTDG_00620 [Francisella novicida GA99-3548]
          Length = 197

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 9/65 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL-------DLEGY-LV 269
           G ++   G SNAGKSS  N L  +K +A V+  PG T+ +   DL       DL GY   
Sbjct: 23  GVEVAFAGRSNAGKSSALNTLTDQKGLARVSKTPGRTQLINLFDLGDNNRLVDLPGYGYA 82

Query: 270 KISDT 274
           K+S++
Sbjct: 83  KVSES 87


>gi|114770123|ref|ZP_01447661.1| GTP-binding protein [alpha proteobacterium HTCC2255]
 gi|114548960|gb|EAU51843.1| GTP-binding protein [alpha proteobacterium HTCC2255]
          Length = 216

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           ++   G SN GKSSL NAL  +K +A  ++ PG T+++    L    YLV +
Sbjct: 46  EVCFAGRSNVGKSSLINALTGRKSLARTSNTPGRTQEINFFTLSESHYLVDV 97


>gi|57168550|ref|ZP_00367683.1| probable ATP /GTP binding protein Cj0411 [Campylobacter coli
           RM2228]
 gi|57020055|gb|EAL56732.1| probable ATP /GTP binding protein Cj0411 [Campylobacter coli
           RM2228]
          Length = 728

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           + I I G  N+GKSSL NAL K+D   V++IP T 
Sbjct: 163 FNIAITGVMNSGKSSLLNALLKEDFLGVSNIPETA 197


>gi|325473670|gb|EGC76859.1| GTP-binding protein era [Treponema denticola F0402]
          Length = 294

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280
           + I+G  +AGKS+  N  + + V+IV+ IP TTR+ +  I    +G +V I DT G  ++
Sbjct: 6   VTIIGRPSAGKSTFLNTASGEKVSIVSAIPQTTRNAIRGIVNTTKGQIVFI-DTPGYHKS 64

Query: 281 DDI--VEKEGIKRTFLEVENADLILL 304
           +    ++ + I +T LE  +A L L+
Sbjct: 65  EKKLNLKLQEIAKTRLEEGDAVLYLI 90


>gi|317499140|ref|ZP_07957417.1| GTP-binding protein Era [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893553|gb|EFV15758.1| GTP-binding protein Era [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 301

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           +  +G  N GKS+L N L  + +AI +  P TTR+ + T+  D  G ++ + DT GI   
Sbjct: 10  VTFIGRPNVGKSTLMNRLIGQKIAITSSKPQTTRNRIQTVYTDERGQIIFL-DTPGINRA 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + +    ++     +   D++L L E
Sbjct: 69  KNKLGNYMLQVAERTLNEVDVVLWLVE 95


>gi|300870875|ref|YP_003785746.1| ferrous iron transport protein B [Brachyspira pilosicoli 95/1000]
 gi|300688574|gb|ADK31245.1| ferrous iron transport protein B [Brachyspira pilosicoli 95/1000]
          Length = 830

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I G+ N GK+++FNAL   +   V + PG T +     +   GY   + D  G+   
Sbjct: 122 KVAIAGNPNCGKTTIFNALTGANYK-VANYPGVTVEKREYSMLYNGYTYDLMDLPGVYSL 180

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
               + E +    L  E  D I+
Sbjct: 181 SAYSQDEVVACDVLLNEKPDFII 203


>gi|266624278|ref|ZP_06117213.1| ribosome-associated GTPase EngA [Clostridium hathewayi DSM 13479]
 gi|288863874|gb|EFC96172.1| ribosome-associated GTPase EngA [Clostridium hathewayi DSM 13479]
          Length = 245

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENAD 300
           IV+DI GTTRD +  ++   G      DTAG+R    I   +E+  I RT   VE AD
Sbjct: 7   IVSDIAGTTRDAVDTEIVHNGTEYVFIDTAGLRRKSKIKEELERYSIIRTVTAVERAD 64


>gi|212710662|ref|ZP_03318790.1| hypothetical protein PROVALCAL_01728 [Providencia alcalifaciens DSM
           30120]
 gi|212686743|gb|EEB46271.1| hypothetical protein PROVALCAL_01728 [Providencia alcalifaciens DSM
           30120]
          Length = 302

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 35/189 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + V+I +  P TTR  +      + Y +   DT G+    
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEDNYQIIYVDTPGLH--- 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
            I EK  I R             L    +   I   + + F+  GT       +T + + 
Sbjct: 68  -IEEKRAINR-------------LMNRAASSSIGDVELVIFVVEGTH------WTPDDEM 107

Query: 342 LISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
           +++  +      +  INKI +++ +K   LP        H+  +SQ + +L++  ++ EK
Sbjct: 108 VLNKLSSLRCPVILAINKIDNVV-DKTSLLP--------HIGMISQKMNFLDVVPISAEK 158

Query: 399 DCGLDIIAE 407
             G+D IA+
Sbjct: 159 GTGVDTIAK 167


>gi|152990528|ref|YP_001356250.1| GTP-binding protein [Nitratiruptor sp. SB155-2]
 gi|151422389|dbj|BAF69893.1| GTP-binding protein [Nitratiruptor sp. SB155-2]
          Length = 202

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 30/166 (18%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTID--------------LDLEG 266
           +  LG SN GKSSL NAL  +K++A  +  PG T+ +   D              +DL G
Sbjct: 27  VAFLGRSNVGKSSLLNALTDRKNLAKSSATPGKTKLINFFDVEYKIGDKRFPLRFVDLPG 86

Query: 267 Y-LVKISDTAGIRE----TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID 321
           Y   K S T         T  +  ++ I R F+ + +A    ++ +  ++  +   K  D
Sbjct: 87  YGYAKASKTLKNEWQKHLTQFLANRDAI-RVFVHLIDARHPYMMIDEQTRSFLQSIKKKD 145

Query: 322 FIFIG--TKSDL-----YSTYTEEYDH--LISSFTGEGLEELINKI 358
            I I   TK+D       +   + Y +  LIS+ T  G+EEL +KI
Sbjct: 146 QIVIEVFTKADKLKQKELAALKKRYPNALLISNMTKRGIEELKHKI 191


>gi|52842863|ref|YP_096662.1| ferrous iron transporter B [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81603188|sp|Q5ZS62|FEOB_LEGPH RecName: Full=Ferrous iron transport protein B
 gi|52629974|gb|AAU28715.1| ferrous iron transporter B [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 751

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           +++G+ N GK++LFNAL   +   V + PG T +  T +  L  +L++I+D  G+     
Sbjct: 5   LLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSL-- 61

Query: 283 IVEKEGIKR 291
           +   EGI +
Sbjct: 62  VANAEGISQ 70


>gi|38234285|ref|NP_940052.1| GTP-binding protein Era [Corynebacterium diphtheriae NCTC 13129]
 gi|81829879|sp|Q6NG20|ERA_CORDI RecName: Full=GTPase Era
 gi|38200548|emb|CAE50243.1| Putative GTP-binding protein [Corynebacterium diphtheriae]
          Length = 305

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I  +G  N GKS+L NAL  + +AI  + P TTR  +   +  E   + + DT G
Sbjct: 11  RSGF-ISFVGRPNTGKSTLTNALVGEKIAITANQPETTRHPIRGIVHREDAQIIVVDTPG 69

Query: 277 I 277
           +
Sbjct: 70  L 70


>gi|306841837|ref|ZP_07474519.1| GTP-binding proten HflX [Brucella sp. BO2]
 gi|306288064|gb|EFM59461.1| GTP-binding proten HflX [Brucella sp. BO2]
          Length = 472

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 30/174 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 235 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLRRIRLPHGETVILSDTVGFISN 293

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  ADLIL +++I+     +  ++++ I   +G +   ++   E 
Sbjct: 294 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 353

Query: 339 YDHL--------------------------ISSFTGEGLEELINKIKSILSNKF 366
           ++ +                          +S+ TGEG++ L++ I++ ++   
Sbjct: 354 WNKIDNLDESAREAALRLAAAGSEEGRPIPVSAITGEGVDRLLSLIETRIAGSL 407


>gi|260654966|ref|ZP_05860454.1| conserved hypothetical protein [Jonquetella anthropi E3_33 E1]
 gi|260630281|gb|EEX48475.1| conserved hypothetical protein [Jonquetella anthropi E3_33 E1]
          Length = 374

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 45/75 (60%), Gaps = 4/75 (5%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA-IVTDIPGTTRDVLTIDLDLEGYLV 269
           +L ++  +G +++ LG +NAGKS++ +++ +      V+ +PGTT  V   +  LEG +V
Sbjct: 153 RLQDVFSSGDRLLFLGKTNAGKSTILSSMLRGGSGPTVSAMPGTT--VGLCEYQLEGGIV 210

Query: 270 KISDTAGIRETDDIV 284
            + D  G++  D ++
Sbjct: 211 LL-DAPGLKSHDSLL 224


>gi|255066262|ref|ZP_05318117.1| GTP-binding protein HflX [Neisseria sicca ATCC 29256]
 gi|255049472|gb|EET44936.1| GTP-binding protein HflX [Neisseria sicca ATCC 29256]
          Length = 377

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G++NAGKSSLFN L K DV          +D L   LD     + +S  AG+  TD 
Sbjct: 200 AIVGYTNAGKSSLFNRLTKADV--------LAKDQLFATLDTTARRLFLSHEAGVILTDT 251

Query: 283 I 283
           +
Sbjct: 252 V 252


>gi|115451735|ref|NP_001049468.1| Os03g0232500 [Oryza sativa Japonica Group]
 gi|108707011|gb|ABF94806.1| GTP-binding protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547939|dbj|BAF11382.1| Os03g0232500 [Oryza sativa Japonica Group]
 gi|215766877|dbj|BAG99105.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 318

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 223 VILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            +LG SN GKSSL NAL  +K+ A+ +  PG T+ +    ++   YLV +
Sbjct: 136 AVLGRSNVGKSSLINALIRRKEAALTSKKPGKTQTINHFLVNKSWYLVDL 185


>gi|94500521|ref|ZP_01307052.1| probable GTP-binding protein [Oceanobacter sp. RED65]
 gi|94427311|gb|EAT12290.1| probable GTP-binding protein [Oceanobacter sp. RED65]
          Length = 436

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + +   QG+      +   + ++G++NAGKS+LFNAL +  V     +  T    L  I 
Sbjct: 182 VQTQREQGRRARKRSSTPSVSLVGYTNAGKSTLFNALTEAKVYAADQLFATLDPTLRRIP 241

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +   G +V +     IR     +  E  K T  E + ADL+L
Sbjct: 242 IQGLGEVVLVDTVGFIRHLPHKL-VEAFKATLQETQEADLLL 282


>gi|52079196|ref|YP_077987.1| GTP binding protein [Bacillus licheniformis ATCC 14580]
 gi|52002407|gb|AAU22349.1| GTP binding protein [Bacillus licheniformis ATCC 14580]
          Length = 275

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 14/118 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279
           +++ +G  + GK++LF+A+  +      ++ G+T      ++  L G+  +  DT GIRE
Sbjct: 10  RMLFIGLESVGKTTLFSAITDQRAGEAANVKGSTIFAAEREIKSLPGW--QAIDTPGIRE 67

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDFIFIGTKSD 330
            D  V K  +K+   E+E AD ++ +       +E+N+  E+  P+     FI T  D
Sbjct: 68  -DGSVSKRALKK---EIEKADEVVAVLRGTHFSEELNAVLELIPPEARRVCFIVTFQD 121


>gi|241763851|ref|ZP_04761896.1| GTP-binding protein Era [Acidovorax delafieldii 2AN]
 gi|241366895|gb|EER61309.1| GTP-binding protein Era [Acidovorax delafieldii 2AN]
          Length = 334

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T     E       DT G +   
Sbjct: 44  IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGIRTREQTQFIFVDTPGFQTRH 103

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKEINS 310
                + + +T +  + + DLIL + E  S
Sbjct: 104 ATALNKSLNKTVMGAIGDVDLILFVVEAGS 133


>gi|213403632|ref|XP_002172588.1| nucleolar GTP-binding protein [Schizosaccharomyces japonicus
           yFS275]
 gi|212000635|gb|EEB06295.1| nucleolar GTP-binding protein [Schizosaccharomyces japonicus
           yFS275]
          Length = 605

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I  L N  +S+  Q   G   +    I ++G+ N GKSS  NALA      V+  PG T
Sbjct: 257 NINMLSNIFNSYAEQSANG---KKSVTIGLVGYPNVGKSSTINALAGAKKVSVSSTPGKT 313

Query: 255 RDVLTIDL 262
           +   TI L
Sbjct: 314 KHFQTIKL 321


>gi|254459073|ref|ZP_05072496.1| GTP-binding protein Era [Campylobacterales bacterium GD 1]
 gi|207084344|gb|EDZ61633.1| GTP-binding protein Era [Campylobacterales bacterium GD 1]
          Length = 292

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 44/87 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N+L  +++A+V+     TR      +  E   +   DT G+ E +
Sbjct: 7   VSLIGRPNAGKSTLMNSLLGENIAMVSQKANATRKRSNAIVMHEDTQIIFVDTPGLHERE 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
            ++ +  +      + + DLI+ L  +
Sbjct: 67  KLLNQFMLDEALKAMGDCDLIVYLAPV 93


>gi|206968833|ref|ZP_03229788.1| GTP-binding protein [Bacillus cereus AH1134]
 gi|206735874|gb|EDZ53032.1| GTP-binding protein [Bacillus cereus AH1134]
          Length = 425

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I ++G++NAGKS+LFN L + +     ++   T D  T  + L  GY V ++DT G  
Sbjct: 198 FQISLIGYTNAGKSTLFNRLTEAN-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 256

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 257 QDLPTSLIAAFRSTLEEAGEADVIL 281


>gi|169794678|ref|YP_001712471.1| GTP-binding protein [Acinetobacter baumannii AYE]
 gi|213157950|ref|YP_002320748.1| GTP-binding proten [Acinetobacter baumannii AB0057]
 gi|215482267|ref|YP_002324449.1| GTP-binding proten HflX [Acinetobacter baumannii AB307-0294]
 gi|301345845|ref|ZP_07226586.1| GTP-binding proten HflX [Acinetobacter baumannii AB056]
 gi|301512161|ref|ZP_07237398.1| GTP-binding proten HflX [Acinetobacter baumannii AB058]
 gi|301597149|ref|ZP_07242157.1| GTP-binding proten HflX [Acinetobacter baumannii AB059]
 gi|332851561|ref|ZP_08433538.1| GTP-binding protein HflX [Acinetobacter baumannii 6013150]
 gi|332867760|ref|ZP_08437832.1| GTP-binding protein HflX [Acinetobacter baumannii 6013113]
 gi|169147605|emb|CAM85466.1| GTP-binding protein [Acinetobacter baumannii AYE]
 gi|213057110|gb|ACJ42012.1| GTP-binding proten [Acinetobacter baumannii AB0057]
 gi|213988685|gb|ACJ58984.1| GTP-binding proten HflX [Acinetobacter baumannii AB307-0294]
 gi|332729906|gb|EGJ61238.1| GTP-binding protein HflX [Acinetobacter baumannii 6013150]
 gi|332733766|gb|EGJ64918.1| GTP-binding protein HflX [Acinetobacter baumannii 6013113]
          Length = 444

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           + ++G++NAGKS+LFN LAK DV     +  T    L  ++ D  G +V ++DT G +R 
Sbjct: 202 VSLVGYTNAGKSTLFNILAKSDVYAADQLFATLDPTLRRLEWDGIGTVV-LADTVGFVRN 260

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL 303
              D+V  E  K T  E   A L+L
Sbjct: 261 LQHDLV--ESFKATLEETLEATLLL 283


>gi|147678212|ref|YP_001212427.1| Fe2+ transport system protein B [Pelotomaculum thermopropionicum
           SI]
 gi|146274309|dbj|BAF60058.1| Fe2+ transport system protein B [Pelotomaculum thermopropionicum
           SI]
          Length = 642

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           G I     KIV++G+ N GKS  FNAL    V  V + PGTT D+
Sbjct: 3   GNIPAGNKKIVLVGNPNVGKSVFFNALTGLYVD-VANYPGTTLDI 46


>gi|90420863|ref|ZP_01228768.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90334838|gb|EAS48610.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 320

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + +LG  NAGKS+L N L    V+IVT    TTR ++      +   +   DT G
Sbjct: 26  RSGF-VALLGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIAMRDRTQIVFVDTPG 84

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           +      +++  ++  +    +AD++L +
Sbjct: 85  VFAPKRRLDRAMVRTAWSGARDADIVLAI 113


>gi|45185350|ref|NP_983067.1| ABR120Cp [Ashbya gossypii ATCC 10895]
 gi|52783200|sp|Q75DA4|NOG2_ASHGO RecName: Full=Nucleolar GTP-binding protein 2
 gi|44981039|gb|AAS50891.1| ABR120Cp [Ashbya gossypii ATCC 10895]
          Length = 502

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    +L+   D  G
Sbjct: 312 RQQISVGFIGYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLMKRIFLI---DCPG 368

Query: 277 I 277
           I
Sbjct: 369 I 369


>gi|94311038|ref|YP_584248.1| small GTP-binding protein domain-containing protein [Cupriavidus
           metallidurans CH34]
 gi|93354890|gb|ABF08979.1| GTP-binding protein (putative GTPase) [Cupriavidus metallidurans
           CH34]
          Length = 411

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I ++G++NAGKS+LFNAL K   A   D    T D  +  L L+G+  V +SDT G    
Sbjct: 204 ISLVGYTNAGKSTLFNALTKAR-AYAADQLFATLDTTSRRLFLDGFGNVVLSDTVGFIRD 262

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
                    + T  E  +ADL+L + + +S
Sbjct: 263 LPTQLVAAFRATLDETVHADLLLHVVDASS 292


>gi|255940668|ref|XP_002561103.1| Pc16g07800 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585726|emb|CAP93450.1| Pc16g07800 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 563

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N+GKSS+ N L  K V  V  IPG T+    I L    YL+   D  G
Sbjct: 325 RKQVSVGLIGYPNSGKSSIINTLRSKKVCTVAPIPGETKVWQYITLMKRIYLI---DCPG 381

Query: 277 I 277
           +
Sbjct: 382 V 382


>gi|154506027|ref|ZP_02042765.1| hypothetical protein RUMGNA_03569 [Ruminococcus gnavus ATCC 29149]
 gi|153793526|gb|EDN75946.1| hypothetical protein RUMGNA_03569 [Ruminococcus gnavus ATCC 29149]
          Length = 206

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIR 278
           I   G SN GKSSL NAL  +K  A ++  PG T+ +   +++ E YLV +     A + 
Sbjct: 26  IAFAGKSNVGKSSLINALMNRKSYARISATPGKTQTINFYNINEELYLVDLPGYGYAKVS 85

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           E + I     I+R     +    + LL +I
Sbjct: 86  EKEKIQWGNLIERYLHTSKQLKAVFLLIDI 115


>gi|54295497|ref|YP_127912.1| ferrous iron transporter B [Legionella pneumophila str. Lens]
 gi|81601190|sp|Q5WTE1|FEOB_LEGPL RecName: Full=Ferrous iron transport protein B
 gi|53755329|emb|CAH16825.1| ferrous iron transporter B [Legionella pneumophila str. Lens]
          Length = 751

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           +++G+ N GK++LFNAL   +   V + PG T +  T +  L  +L++I+D  G+     
Sbjct: 5   LLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSL-- 61

Query: 283 IVEKEGIKR 291
           +   EGI +
Sbjct: 62  VANAEGISQ 70


>gi|294852449|ref|ZP_06793122.1| GTP-binding protein HflX [Brucella sp. NVSL 07-0026]
 gi|294821038|gb|EFG38037.1| GTP-binding protein HflX [Brucella sp. NVSL 07-0026]
          Length = 496

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 30/174 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 235 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLHRIRLPHGETVILSDTVGFISN 293

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338
                    + T  EV  ADLIL +++I+     +  ++++ I   +G +   ++   E 
Sbjct: 294 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 353

Query: 339 YDHL--------------------------ISSFTGEGLEELINKIKSILSNKF 366
           ++ +                          +S+ TGEG++ L++ I++ ++   
Sbjct: 354 WNKIDNLDESAREAALRLAAAGSEEGRPIPVSAITGEGVDRLLSLIETRIAGAL 407


>gi|260432757|ref|ZP_05786728.1| GTP-binding protein Era [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416585|gb|EEX09844.1| GTP-binding protein Era [Silicibacter lacuscaerulensis ITI-1157]
          Length = 302

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 30/182 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +  + ++ +  LV + DT 
Sbjct: 4   RAGF-IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDAQLVFV-DTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL------------------LKEINSKKEISFP 317
           G+ +    +++  +   +    +AD+I+L                  L EI   ++++  
Sbjct: 62  GLFKPRRRLDRAMVAAAWGGAADADIIVLMVEAHRGITEGVERILDGLSEIAQGRKVALA 121

Query: 318 KN-IDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            N ID +     +    DL   +      +IS+ TG G+E+L    +  L+ +  + P+ 
Sbjct: 122 INKIDRVEAPALLSLTRDLNDRFPFAETFMISAETGHGVEDL----RKWLAQQLPEGPWL 177

Query: 373 IP 374
            P
Sbjct: 178 YP 179


>gi|222100702|ref|YP_002535270.1| GTP-binding protein era like protein [Thermotoga neapolitana DSM
           4359]
 gi|221573092|gb|ACM23904.1| GTP-binding protein era like protein [Thermotoga neapolitana DSM
           4359]
          Length = 301

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDT 274
           I++G+ + + G  N GKS+  N +  + V IV+D P TTR+ +  I  D +  +V + DT
Sbjct: 4   IKSGF-VALAGKPNVGKSTFINTVLGRKVVIVSDKPQTTRNRINCIYTDKDAQIVFV-DT 61

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GI +    + +  ++     ++  D++L +
Sbjct: 62  PGIHKPLHRLGEYMVRAAVQALKGVDIVLFM 92


>gi|212636522|ref|YP_002313047.1| GTP-binding protein Era [Shewanella piezotolerans WP3]
 gi|212558006|gb|ACJ30460.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Shewanella piezotolerans WP3]
          Length = 330

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 12/115 (10%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
            S E+D+   S++  L+D+L   N+ SS +       +   G  + I+G  N GKS+L N
Sbjct: 1   MSNEKDLPE-SNEPSLDDLLAQMNNPSSAVKYA----VTYCGM-VAIVGRPNVGKSTLLN 54

Query: 238 ALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
            L  + ++I +  P TTR  ++ I  D    +V I DT G+     + EK  I R
Sbjct: 55  KLLGQKISITSKKPQTTRHRIMGIHTDGPRQVVFI-DTPGLH----MEEKRAINR 104


>gi|110808091|ref|YP_691611.1| putative GTPase HflX [Shigella flexneri 5 str. 8401]
 gi|110617639|gb|ABF06306.1| GTP-binding protein hflX [Shigella flexneri 5 str. 8401]
          Length = 403

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 27/202 (13%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +     QG+   I  +   + ++G++NAGKS+LFN + +  V     +  T    L  ID
Sbjct: 158 VEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRID 217

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILL------------LKE 307
           +   G  V ++DT G IR    D+V     K T  E   A L+L             ++ 
Sbjct: 218 VADVGETV-LADTVGFIRHLPHDLV--AAFKATLQETRQATLLLHVIDAADVRVQENIEA 274

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKI 358
           +N+  E      I  + +  K D+   +    D           +S+ TG G+ +L   +
Sbjct: 275 VNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIPQLFQAL 334

Query: 359 KSILSNKFKKLPFSIPSHKRHL 380
              LS +  +    +P  +  L
Sbjct: 335 TERLSGEVAQHTLRLPPQEGRL 356


>gi|104783871|ref|YP_610369.1| hypothetical protein PSEEN4942 [Pseudomonas entomophila L48]
 gi|95112858|emb|CAK17586.1| conserved hypothetical protein HflX [Pseudomonas entomophila L48]
          Length = 433

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           + S   Q + G    +   + ++G++NAGKS+LFNAL + +V     +  T    L  ++
Sbjct: 182 VRSQREQARRGRKRADIPSVSLVGYTNAGKSTLFNALTQSEVYAADQLFATLDPTLRRLE 241

Query: 262 LDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           L   G +V ++DT G IR     +  E  + T  E  N+DL+L
Sbjct: 242 LADLGPIV-LADTVGFIRHLPHKL-VEAFRATLEESSNSDLLL 282


>gi|39996112|ref|NP_952063.1| GTP-binding protein [Geobacter sulfurreducens PCA]
 gi|39982877|gb|AAR34336.1| GTP-binding protein [Geobacter sulfurreducens PCA]
          Length = 555

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 219 GYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAG 276
           G  IV I+G++NAGKS+L NAL K DV    ++   T D  T  L       V I+DT G
Sbjct: 370 GLPIVSIVGYTNAGKSTLLNALTKSDV-FTENLLFATLDTSTRRLRFPREREVIITDTVG 428

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
              +         K T  E+++ADL+L L
Sbjct: 429 FIRSLPASLLGAFKATLEELQDADLLLHL 457


>gi|19114808|ref|NP_593896.1| ribosome export GTPase (predicted) [Schizosaccharomyces pombe
           972h-]
 gi|52783174|sp|O14236|NOG2_SCHPO RecName: Full=Nucleolar GTP-binding protein 2
 gi|2388994|emb|CAB11727.1| ribosome export GTPase (predicted) [Schizosaccharomyces pombe]
          Length = 537

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           + ++G  NAGKSS+ N L KK V  V  IPG T+
Sbjct: 313 VGLIGFPNAGKSSIINTLRKKKVCNVAPIPGETK 346


>gi|116492866|ref|YP_804601.1| GTPase [Pediococcus pentosaceus ATCC 25745]
 gi|122265670|sp|Q03F63|ERA_PEDPA RecName: Full=GTPase Era
 gi|116103016|gb|ABJ68159.1| GTPase [Pediococcus pentosaceus ATCC 25745]
          Length = 304

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 42/84 (50%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +  + VAI++++P TTR+ +      +   +   DT GI ++ 
Sbjct: 13  VAIVGRPNVGKSTFLNYVIGQKVAIMSNVPQTTRNKIQGIYTTDREQIVFIDTPGIHKSH 72

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
           + +    ++     +   D I+ +
Sbjct: 73  NKLGDFMVQSAMSSLNEVDAIMFM 96


>gi|295397567|ref|ZP_06807646.1| ribosome biogenesis GTP-binding protein YsxC [Aerococcus viridans
           ATCC 11563]
 gi|294974191|gb|EFG49939.1| ribosome biogenesis GTP-binding protein YsxC [Aerococcus viridans
           ATCC 11563]
          Length = 201

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 27/173 (15%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGI 277
           +I + G SN GKSS  N +  +K +A  +  PG T+ +    ++   Y V +     A +
Sbjct: 25  EIALAGRSNVGKSSFINTMINRKKLARTSSKPGKTQQLNYYQIEDLFYFVDVPGYGYARV 84

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK- 328
            +T+     E ++  F   EN  L LL+ +   K        KE      + +  I TK 
Sbjct: 85  SKTEKAKWGEMLETYFATRENLALALLIVDFRHKPTKDDIQMKEFMDYHGVPYFVIATKT 144

Query: 329 ------------SDLYSTYT-EEYDHLI--SSFTGEGLEELINKIKSILSNKF 366
                       SD+Y T   E  D ++  S+ T +G +E    I+++L  +F
Sbjct: 145 DKIKKSQWNKHLSDIYKTLELESIDQILPFSAETKDGRDEAWEVIQAVLDGEF 197


>gi|283483337|emb|CAX32467.1| nucleostemin-like protein 1 [Isodiametra pulchra]
          Length = 565

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++    I ++G  N GKSS+ N+L +     V  +PG TR +  + LD +   +++ D+ 
Sbjct: 253 MKTAITIGVVGIPNVGKSSVINSLKRSRACNVGSVPGVTRSMQEVQLDSK---LRLLDSP 309

Query: 276 GI 277
           G+
Sbjct: 310 GV 311


>gi|261417444|ref|YP_003251127.1| GTP-binding proten HflX [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373900|gb|ACX76645.1| GTP-binding proten HflX [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326172|gb|ADL25373.1| GTP-binding protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 398

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +++ I+G++NAGKS+L N L   DV  V D    T D  T  L L+G  + +SDT G
Sbjct: 211 FQVGIVGYTNAGKSTLTNRLTGADV-YVEDKLFATLDSTTRKLFLDGENIILSDTVG 266


>gi|283795872|ref|ZP_06345025.1| ferrous iron transport protein B [Clostridium sp. M62/1]
 gi|291076505|gb|EFE13869.1| ferrous iron transport protein B [Clostridium sp. M62/1]
          Length = 667

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N GK++LFNA     +  V + PG T + +  +   +G  +++ D  GI       
Sbjct: 15  VGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERVEGETSYKGRPIRVIDLPGIYSLTSYT 73

Query: 285 EKEGIKRTFLEVENADLIL 303
            +E + R  +E    D+I+
Sbjct: 74  IEERVTRKCIEENEVDVII 92


>gi|224043030|ref|XP_002195101.1| PREDICTED: similar to MGC83645 protein [Taeniopygia guttata]
          Length = 473

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 35/175 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPG-TTRDVLTIDLDL---EGYL-----VKIS 272
           + ++G++N+GK++L  AL        T   G   RD L   LD+    GYL     V   
Sbjct: 248 VSVMGYTNSGKTTLIKAL--------TGEAGLQPRDQLFATLDITAHAGYLPSHMAVIYV 299

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI-------SFPKNIDF--- 322
           DT G          E    T  EV  +DLI+ +++I   + I       S  +N++    
Sbjct: 300 DTIGFLTDLPHNLVESFSATLEEVAYSDLIVHVRDITHPETILQKATVLSVLRNLNLPSH 359

Query: 323 -----IFIGTKSDLYSTY--TEEYDHLISSFTGEGLEELINKI-KSILSNKFKKL 369
                + +  K DL   Y  TEE    +S+  G GLEEL  +I K IL+   KK+
Sbjct: 360 LLDSMVEVHNKVDLTERYKPTEENALAVSALHGYGLEELKQEIEKKILTATGKKI 414


>gi|212540632|ref|XP_002150471.1| nucleolar GTPase, putative [Penicillium marneffei ATCC 18224]
 gi|210067770|gb|EEA21862.1| nucleolar GTPase, putative [Penicillium marneffei ATCC 18224]
          Length = 565

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L  K V  V  IPG T+    I L    YL+       
Sbjct: 320 RKQISVGFIGYPNTGKSSIINTLRNKKVCTVAPIPGETKVWQYITLMKRIYLIDCPGVVP 379

Query: 277 IRETDDIVEKEGIKRTFLEVEN 298
             + D   E++ + R  + VEN
Sbjct: 380 PNQNDS--EEDILLRGVVRVEN 399


>gi|172041010|ref|YP_001800724.1| GTP-binding protein Era [Corynebacterium urealyticum DSM 7109]
 gi|171852314|emb|CAQ05290.1| putative GTP-binding protein [Corynebacterium urealyticum DSM 7109]
          Length = 346

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +      + + D
Sbjct: 44  EGFRSGF-VSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGLVHRPKAQIVVVD 102

Query: 274 TAGI 277
           T G+
Sbjct: 103 TPGL 106


>gi|160878692|ref|YP_001557660.1| GTP-binding proten HflX [Clostridium phytofermentans ISDg]
 gi|160427358|gb|ABX40921.1| GTP-binding proten HflX [Clostridium phytofermentans ISDg]
          Length = 420

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG 276
           + I+G++NAGKS+L N L + DV +  ++   T D  T +L LE G  V ++DT G
Sbjct: 204 VAIVGYTNAGKSTLLNRLTEADV-LEANMLFATLDPTTRNLSLESGQQVLLTDTVG 258


>gi|78777575|ref|YP_393890.1| GTP-binding protein Era [Sulfurimonas denitrificans DSM 1251]
 gi|78498115|gb|ABB44655.1| GTP-binding protein Era [Sulfurimonas denitrificans DSM 1251]
          Length = 300

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 6/90 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR---DVLTIDLDLEGYLVKISDTAGIR 278
           + ++G  NAGKS+L N+L  +++A+V+     TR   + + +  D +   V   DT G+ 
Sbjct: 15  VSLIGRPNAGKSTLMNSLLGENIAMVSQKANATRKRSNAIVMHNDTQIIFV---DTPGLH 71

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           E + ++ +  +      + + DLI+ L  I
Sbjct: 72  EREKVLNQFMLDEALKAMGDCDLIVYLAPI 101


>gi|24115528|ref|NP_710038.1| putative GTPase HflX [Shigella flexneri 2a str. 301]
 gi|30065545|ref|NP_839716.1| putative GTPase HflX [Shigella flexneri 2a str. 2457T]
 gi|24054856|gb|AAN45745.1| GTP-binding subunit of protease specific for phage lambda cII
           repressor [Shigella flexneri 2a str. 301]
 gi|30043809|gb|AAP19528.1| GTP-binding subunit of protease specific for phage lambda cII
           repressor [Shigella flexneri 2a str. 2457T]
 gi|281603635|gb|ADA76619.1| GTP-binding subunit of protease specific for phage lambda cII
           repressor [Shigella flexneri 2002017]
 gi|313646352|gb|EFS10814.1| GTP-binding proten HflX [Shigella flexneri 2a str. 2457T]
 gi|332749049|gb|EGJ79472.1| GTP-binding proten HflX [Shigella flexneri K-671]
 gi|332749318|gb|EGJ79739.1| GTP-binding proten HflX [Shigella flexneri 4343-70]
 gi|332761879|gb|EGJ92153.1| GTP-binding proten HflX [Shigella flexneri 2747-71]
 gi|332763221|gb|EGJ93464.1| GTP-binding proten HflX [Shigella flexneri 2930-71]
 gi|333011969|gb|EGK31354.1| GTP-binding proten HflX [Shigella flexneri K-304]
          Length = 426

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 27/202 (13%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +     QG+   I  +   + ++G++NAGKS+LFN + +  V     +  T    L  ID
Sbjct: 181 VEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRID 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILL------------LKE 307
           +   G  V ++DT G IR    D+V     K T  E   A L+L             ++ 
Sbjct: 241 VADVGETV-LADTVGFIRHLPHDLV--AAFKATLQETRQATLLLHVIDAADVRVQENIEA 297

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKI 358
           +N+  E      I  + +  K D+   +    D           +S+ TG G+ +L   +
Sbjct: 298 VNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIPQLFQAL 357

Query: 359 KSILSNKFKKLPFSIPSHKRHL 380
              LS +  +    +P  +  L
Sbjct: 358 TERLSGEVAQHTLRLPPQEGRL 379


>gi|329767414|ref|ZP_08258939.1| ribosome biogenesis GTP-binding protein YlqF [Gemella haemolysans
           M341]
 gi|328836103|gb|EGF85794.1| ribosome biogenesis GTP-binding protein YlqF [Gemella haemolysans
           M341]
          Length = 292

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           I+  +++G     IR+    +++G  N GKS+  N L KK++A   + PG T+    + L
Sbjct: 108 IARQVAKGIKPRAIRS----MVIGVPNVGKSTFINKLIKKNIANTANKPGVTKKQQWLKL 163

Query: 263 DLEGYLVKISDTAGI 277
           + +   +++ DT GI
Sbjct: 164 NKD---IELLDTPGI 175


>gi|296108303|ref|YP_003620004.1| ferrous iron transport protein B [Legionella pneumophila 2300/99
           Alcoy]
 gi|295650205|gb|ADG26052.1| ferrous iron transport protein B [Legionella pneumophila 2300/99
           Alcoy]
          Length = 751

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           +++G+ N GK++LFNAL   +   V + PG T +  T +  L  +L++I+D  G+     
Sbjct: 5   LLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSL-- 61

Query: 283 IVEKEGIKR 291
           +   EGI +
Sbjct: 62  VANAEGISQ 70


>gi|270265000|ref|ZP_06193263.1| hypothetical protein SOD_k00360 [Serratia odorifera 4Rx13]
 gi|270040934|gb|EFA14035.1| hypothetical protein SOD_k00360 [Serratia odorifera 4Rx13]
          Length = 426

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 103/261 (39%), Gaps = 47/261 (18%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           ++    QG+      +   + ++G++NAGKS+LFN +   DV     +  T    L  ID
Sbjct: 181 VAKQREQGRRARTRADVPTVSLVGYTNAGKSTLFNRITSADVYAADQLFATLDPTLRRID 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL---------------- 303
           +   G  V ++DT G IR    D+V     K T  E   A L+L                
Sbjct: 241 VADVGDTV-LADTVGFIRHLPHDLV--AAFKATLQETRQASLLLHVIDAADTRVDENIEA 297

Query: 304 ---LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGL 351
              +L EI S +       I  + +  K D+   +    D           +S+ +GEG+
Sbjct: 298 VNTVLAEIESDE-------IPTLLVMNKIDMLDDFVPRIDRNDENLPIRVWLSAASGEGI 350

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
             L   +   LS +  +    +P     L      ++ +E    NE+D  + ++   +R+
Sbjct: 351 PLLYQALTERLSGEIAQYELRLPPQAGRLRSRFYQLQAIE-KEWNEEDGSIGMV---IRM 406

Query: 412 ASVSLGKITGCVDVEQLLDII 432
             V   ++  C   + L++ I
Sbjct: 407 PIVEWRRL--CKQEQDLINFI 425


>gi|170076776|ref|YP_001733414.1| GTPase of unknown function [Synechococcus sp. PCC 7002]
 gi|169884445|gb|ACA98158.1| GTPase of unknown function [Synechococcus sp. PCC 7002]
          Length = 533

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDT 274
           R   ++ + G  +AGK+SL NAL  + V  V    GTT+   T  L L+G    + I+DT
Sbjct: 130 RQELQVAVFGTGSAGKTSLVNALIGQMVGNVEATMGTTQTGQTYRLKLKGVNRQILITDT 189

Query: 275 AGIRETDDIVEKEGIKRTFLEVE---NADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
            GI E  +     GI+R  L  E   NADL++ + + N  ++  +    +   IG +S L
Sbjct: 190 PGILEAGE----AGIQRDRLARELATNADLLIFVVD-NDLRQSEYDPLCELAEIGKRSLL 244

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKI 358
                + Y        G+ L+E +  +
Sbjct: 245 VFNKIDVYADADQQLIGDRLKEKVQHL 271


>gi|145344056|ref|XP_001416555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576781|gb|ABO94848.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 597

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I+    + I+G  N GKSSL N+L + +  A V + PG T+ +  I LD     VK+ D+
Sbjct: 274 IKTAITVGIVGFPNVGKSSLINSLKRSRTAAAVGNTPGMTKVLKEIKLDKH---VKLIDS 330

Query: 275 AGI 277
            G+
Sbjct: 331 PGV 333


>gi|187928158|ref|YP_001898645.1| GTP-binding proten HflX [Ralstonia pickettii 12J]
 gi|187725048|gb|ACD26213.1| GTP-binding proten HflX [Ralstonia pickettii 12J]
          Length = 417

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           + + + ++G++NAGKS+LFNAL K        +  T  D  +  L LEG   V +SDT G
Sbjct: 200 DAFSVSLVGYTNAGKSTLFNALTKARAYAANQLFATL-DTTSRRLYLEGLGNVVLSDTVG 258


>gi|117626520|ref|YP_859843.1| putative GTPase HflX [Escherichia coli APEC O1]
 gi|115515644|gb|ABJ03719.1| HflX protein, GTP-binding subunit of protease specific for phage
           lambda cII repressor [Escherichia coli APEC O1]
          Length = 403

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 27/202 (13%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +     QG+   I  +   + ++G++NAGKS+LFN + +  V     +  T    L  ID
Sbjct: 158 VEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRID 217

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILL------------LKE 307
           +   G  V ++DT G IR    D+V     K T  E   A L+L             ++ 
Sbjct: 218 VADVGETV-LADTVGFIRHLPHDLV--AAFKATLQETRQATLLLHVIDAADVRVQENIEA 274

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKI 358
           +N+  E      I  + +  K D+   +    D           +S+ TG G+ +L   +
Sbjct: 275 VNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPQLFQAL 334

Query: 359 KSILSNKFKKLPFSIPSHKRHL 380
              LS +  +    +P  +  L
Sbjct: 335 TERLSGEVAQHTLRLPPQEGRL 356


>gi|319405766|emb|CBI79389.1| GTP-binding protein HflX [Bartonella sp. AR 15-3]
          Length = 444

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G++NAGKS+LFN L+  +V     +  T    L   +   G  V +SDT G     
Sbjct: 221 IALVGYTNAGKSTLFNRLSNSNVLAKNMLFATLDPTLRKIVLPHGQTVLLSDTVGFISNL 280

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
                   + T  EV  ADLIL +++
Sbjct: 281 PTHLIAAFRATLEEVIEADLILHVRD 306


>gi|297719757|ref|NP_001172240.1| Os01g0225200 [Oryza sativa Japonica Group]
 gi|255673015|dbj|BAH90970.1| Os01g0225200 [Oryza sativa Japonica Group]
          Length = 217

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPG--TTRDVLTIDLDLEGYLVKISDTAGI 277
           ++++G  N GKS+LFN   ++  A+V + PG   TRD+      L     ++ D+AG+
Sbjct: 96  VILVGRPNVGKSALFNRFIRRREALVYNTPGDHVTRDIREGVAKLGDLRFRVLDSAGL 153


>gi|225461399|ref|XP_002284849.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 530

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 29/219 (13%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-------DLEGYLVKISDTAGI 277
           +G+ N GKSS+ N L  K+V  V  IPG T+    I L       D  G + + SD+   
Sbjct: 312 VGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNSDS--- 368

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
            ET D+V K  ++ T LE  +  +  +LK +  KKE     +++  +     D  + +  
Sbjct: 369 -ET-DVVLKGVVRVTNLEDASEHIGEVLKRV--KKE-----HLERAYKIKDWDDENDFLV 419

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           +   L       G  +L+   K +L +  + ++PF +P  ++     S     L +    
Sbjct: 420 QLCKLTGKLLKGGEPDLMTVAKMVLHDWQRGRIPFFVPPPRQQEGDSSDEPSTLGV---- 475

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435
           EKD  +D   +N   AS ++  I   +  +Q +++   K
Sbjct: 476 EKDTAVD---DN--QASAAIRAIANVISSQQTMNVPVQK 509


>gi|156083246|ref|XP_001609107.1| GTP-binding protein engA [Babesia bovis T2Bo]
 gi|154796357|gb|EDO05539.1| GTP-binding protein engA, putative [Babesia bovis]
          Length = 353

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           +  +G  N GKSSL N L+  +  +V+   GTT D + + +  +G    + DTAG+R
Sbjct: 161 VSFVGRPNCGKSSLVNLLSGTNRCLVSSNEGTTLDNVEVTVSEKGRQYLLIDTAGMR 217


>gi|160902955|ref|YP_001568536.1| GTP-binding protein HSR1-related [Petrotoga mobilis SJ95]
 gi|160360599|gb|ABX32213.1| GTP-binding protein HSR1-related [Petrotoga mobilis SJ95]
          Length = 523

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 69/147 (46%), Gaps = 40/147 (27%)

Query: 220 YKIVILGHSNAGKSSLFNAL-----------------AKKDVAIVTDIPG---TTRDVLT 259
           +  V++G   AGKSS  NAL                     + IV    G   T  D++T
Sbjct: 50  FNFVVVGKVKAGKSSFLNALLGIKEGEESIFEVGPGPQTSKITIVRKGQGNVETKGDMVT 109

Query: 260 I--DLD-LEGYLVKISDTAGIRETDDIVEK-EGIKRTFLEVENADLILLL---KEINSKK 312
           I  DLD LEG  ++I DT G   TD I+EK E I R FL  EN++LI+ +   K I +K 
Sbjct: 110 IYKDLDSLEG--IEIIDTPG---TDTIMEKHEKITRDFL--ENSNLIMFVFDSKNIYTKS 162

Query: 313 EISFPKNI------DFIFIGTKSDLYS 333
           +    + I      D IFI ++ D  S
Sbjct: 163 DWELIEKIIKDLKKDVIFILSQKDRAS 189


>gi|66807267|ref|XP_637356.1| guanine nucleotide binding protein 3 [Dictyostelium discoideum AX4]
 gi|74853139|sp|Q54KS4|GNL3_DICDI RecName: Full=Guanine nucleotide-binding protein-like 3 homolog
 gi|60465772|gb|EAL63848.1| guanine nucleotide binding protein 3 [Dictyostelium discoideum AX4]
          Length = 615

 Score = 37.0 bits (84), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + I+G+ N GKSSL N+L +     V   PG T+    + LD     VK+ D+ 
Sbjct: 260 IKTSVTVGIIGYPNVGKSSLINSLKRTRSVGVGATPGFTKFAQEVHLDKN---VKLLDSP 316

Query: 276 GIRETDDIVEKEGIKRTFLEVE 297
           GI      V++  I R  +++E
Sbjct: 317 GIVPIKGNVDENIILRNVVKLE 338


>gi|325068593|ref|ZP_08127266.1| GTP-binding protein Era [Actinomyces oris K20]
          Length = 427

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+   I+G  NAGKS+L NA+    +AI +  P TTR  +   +  E   + + D
Sbjct: 124 EDFRAGFA-CIVGRPNAGKSTLTNAMVGAKIAITSGRPQTTRHNVRGVIHKENAQIVLVD 182

Query: 274 TAGIRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK 311
           T G+     ++ K   + ++ T ++V   D+++     N K
Sbjct: 183 TPGLHRPRTLLGKRLNDLVRETLVDV---DVVVFCIPANEK 220


>gi|323306999|gb|EGA60283.1| Nog1p [Saccharomyces cerevisiae FostersO]
          Length = 647

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           L D L     +  HI  G+L  I  N   ++I G+ N GKSS    + K DV  V     
Sbjct: 143 LRDPLAYLEQVRQHI--GRLPSIDPNTRTLLICGYPNVGKSSFLRCITKSDVD-VQPYAF 199

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGI--RETDDI 283
           TTR +     D +    +  DT GI  R T+++
Sbjct: 200 TTRSLYVGHFDYKYLRFQAIDTPGILDRPTEEM 232


>gi|315222667|ref|ZP_07864556.1| GTP-binding protein HflX [Streptococcus anginosus F0211]
 gi|315188353|gb|EFU22079.1| GTP-binding protein HflX [Streptococcus anginosus F0211]
          Length = 412

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIR 278
           +KI ++G++NAGKS++ NAL  K      ++  T  D  T  ++L G + V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNALTNKSQYEADELFATL-DATTKSVNLTGRFNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELISSFKSTLEESKNVDLLV 282


>gi|312143697|ref|YP_003995143.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium sp.
           'sapolanicus']
 gi|311904348|gb|ADQ14789.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium sp.
           'sapolanicus']
          Length = 285

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LA    A + D PG TR    +++  +   V++ DT GI
Sbjct: 118 RAMIIGIPNVGKSALINLLAGSKAANIADKPGVTRGRQWVNVSKK---VRLLDTPGI 171


>gi|219124473|ref|XP_002182527.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405873|gb|EEC45814.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 386

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           K+ ILG  N GKS+LFNAL +K +A   + P  T D
Sbjct: 4   KVGILGLPNVGKSTLFNALVQKSIAHAANFPFCTID 39


>gi|183600314|ref|ZP_02961807.1| hypothetical protein PROSTU_03876 [Providencia stuartii ATCC 25827]
 gi|188020104|gb|EDU58144.1| hypothetical protein PROSTU_03876 [Providencia stuartii ATCC 25827]
          Length = 426

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 27/206 (13%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           ++ IL   + +     QG+      +   I ++G++NAGKSSLFN +   DV     +  
Sbjct: 171 ISQILSRLSRVEKQREQGRQARNKADIPTISLVGYTNAGKSSLFNRMTASDVYAADQLFA 230

Query: 253 TTRDVL-TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILL----- 304
           T    L  I+++  G +V ++DT G IR    D+V     K T  E   A L+L      
Sbjct: 231 TLDPTLRRINVEDVGPVV-LADTVGFIRHLPHDLV--AAFKATLQETREATLLLHVIDAA 287

Query: 305 -------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTG 348
                  +  + S  E      I  + +  K D+   +    D           +S+ TG
Sbjct: 288 DSRLDENIHAVESVLEEIEADEIPTLLVMNKVDMLEDFIPRIDRNEDNKPVRVWVSAQTG 347

Query: 349 EGLEELINKIKSILSNKFKKLPFSIP 374
           +G+  L+  +   LS +   +   +P
Sbjct: 348 DGIPLLLQALTERLSGEIAHVEMRLP 373


>gi|333030034|ref|ZP_08458095.1| GTP-binding protein engB [Bacteroides coprosuis DSM 18011]
 gi|332740631|gb|EGJ71113.1| GTP-binding protein engB [Bacteroides coprosuis DSM 18011]
          Length = 200

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 23/165 (13%)

Query: 225 LGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDV--LTID-----LDLEGYLVKISDTAG 276
           +G SN GKSSL N L  +K +A+ +  PG T  +    I+     +DL GY     +  G
Sbjct: 29  IGRSNVGKSSLINMLTNRKGLAMTSAKPGKTMLINHFLINEEWYIVDLPGYGYAKRNQKG 88

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI-FIGTKSDLYSTY 335
            ++   I+E   ++RT +     +L +L+    S ++I    +++FI ++G  +  +S  
Sbjct: 89  QQQIKTIIEDYILERTAM----TNLFVLIDCRLSPQQI----DLEFIEWLGENNIPFSIV 140

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKR 378
             + D L  +     +E  +N++K     ++++LP  F   S KR
Sbjct: 141 FTKGDKLTKNKLDSNVEAFLNELKK----QWEELPPYFITSSEKR 181


>gi|328717158|ref|XP_003246134.1| PREDICTED: GTPase Der-like [Acyrthosiphon pisum]
          Length = 407

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAK---KDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            E     YK++I+GH+N GKS++F+ L K   KD AI + I G     + +  + E   +
Sbjct: 208 AETTNKKYKLIIVGHTNVGKSTIFHRLCKGVYKD-AIKSTI-GIDFKEIYVRFENETITL 265

Query: 270 KISDTAGIRE 279
            I DTAG+ +
Sbjct: 266 NIWDTAGLEQ 275


>gi|239504133|ref|ZP_04663443.1| GTPase [Acinetobacter baumannii AB900]
          Length = 444

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           + ++G++NAGKS+LFN LAK DV     +  T    L  ++ D  G +V ++DT G +R 
Sbjct: 202 VSLVGYTNAGKSTLFNILAKSDVYAADQLFATLDPTLRRLEWDGIGTVV-LADTVGFVRN 260

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL 303
              D+V  E  K T  E   A L+L
Sbjct: 261 LQHDLV--ESFKATLEETLEATLLL 283


>gi|114771148|ref|ZP_01448588.1| GTP-binding protein HflX [alpha proteobacterium HTCC2255]
 gi|114548430|gb|EAU51316.1| GTP-binding protein HflX [alpha proteobacterium HTCC2255]
          Length = 417

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 34/225 (15%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVIL-GHSNAGKSSLFNALAKKDVAI 246
           +++ + IL LK  +   +   +L    R    Y IV L G++NAGKS+LFN +    V  
Sbjct: 162 RQIDDAILRLKKQLEKVVKTRELHRSARKKIPYPIVALVGYTNAGKSTLFNYMTGAKV-F 220

Query: 247 VTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T D    +++L  G  + +SDT G             + T  EV +A+LIL +
Sbjct: 221 AKDMLFATLDPTMREVELPSGQKIILSDTVGFISELPTQLIAAFRATLEEVLDANLILHV 280

Query: 306 KEINSKKEISFPKNIDFIF---------------IGTKSDLYS----------TYTEEYD 340
           ++I+  +  +   +++ I                +  K+DL S          +   E  
Sbjct: 281 RDISHPETEAQANDVNDILEELDVSDNTKSNILEVWNKTDLLSNDELINAKNISDRSEKI 340

Query: 341 HLISSFTGEGLEELINKI----KSILSNKFKKLPFSIPSHKRHLY 381
             +S+ TG+GL  L+++I    K I  +   KL  +    +  LY
Sbjct: 341 RTVSALTGDGLSVLLSEIDENLKEITVSDVVKLALTEGGRRAWLY 385


>gi|15219138|ref|NP_175706.1| GTP-binding family protein [Arabidopsis thaliana]
 gi|12324651|gb|AAG52287.1|AC019018_24 putative GTP-binding protein; 106556-109264 [Arabidopsis thaliana]
 gi|332194752|gb|AEE32873.1| putativeGTP-binding protein 2 [Arabidopsis thaliana]
          Length = 576

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI----RET 280
           +G+ N GKSS+ N L  K+V  V  IPG T+    I L    +L+   D  G+    R+T
Sbjct: 315 VGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLI---DCPGVVYQSRDT 371

Query: 281 D-DIVEKEGIKRTFLE 295
           + DIV K  ++ T LE
Sbjct: 372 ETDIVLKGVVRVTNLE 387


>gi|319938915|ref|ZP_08013279.1| GTP-binding protein HflX [Streptococcus anginosus 1_2_62CV]
 gi|319811965|gb|EFW08231.1| GTP-binding protein HflX [Streptococcus anginosus 1_2_62CV]
          Length = 412

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIR 278
           +KI ++G++NAGKS++ NAL  K      ++  T  D  T  ++L G + V ++DT G  
Sbjct: 199 FKIGLIGYTNAGKSTIMNALTNKSQYEADELFATL-DATTKSVNLTGRFNVTLTDTVGFI 257

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          K T  E +N DL++
Sbjct: 258 QDLPTELISSFKSTLEESKNVDLLV 282


>gi|308070420|ref|YP_003872025.1| GTP-binding protein engB [Paenibacillus polymyxa E681]
 gi|305859699|gb|ADM71487.1| Probable GTP-binding protein engB [Paenibacillus polymyxa E681]
          Length = 203

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 27/171 (15%)

Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGI 277
           +I + G SN GKSSL N L  +K++A  +  PG T+ +    ++ + Y V       A +
Sbjct: 25  EIALAGRSNVGKSSLINRLINRKNLARTSSTPGKTQQLNYYRINDDLYFVDFPGYGYAKV 84

Query: 278 RETDDIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF-----PKNIDFIFIGTKS 329
            +T      + I+   LE E   L+L    L+   SK +I          +    +GTK+
Sbjct: 85  SKTSRKAWGQMIESYLLEREPLKLVLQMVDLRHPPSKDDIMMYDWLRHNGLPVCVVGTKA 144

Query: 330 D-LYSTYTEEYDHLI---------------SSFTGEGLEELINKIKSILSN 364
           D +  T  E++  +I               SS  G G EEL + I S + N
Sbjct: 145 DKIPKTRREKHYKVIKQELGILPGGLFIPFSSEEGMGKEELWSVISSYIEN 195


>gi|291542676|emb|CBL15786.1| ribosome biogenesis GTP-binding protein YsxC/EngB [Ruminococcus
           bromii L2-63]
          Length = 200

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 8/75 (10%)

Query: 201 NDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVL 258
           N+++   + G++ ++  +   +IV  GHSN GKSSL N L  +K +A V+  PG T  + 
Sbjct: 4   NEVAFEFAAGRVDQLPESDMPEIVFSGHSNVGKSSLINKLVQRKALARVSAQPGKTATIN 63

Query: 259 TIDL------DLEGY 267
              L      DL GY
Sbjct: 64  FYKLKEFRMVDLPGY 78


>gi|241662761|ref|YP_002981121.1| GTP-binding proten HflX [Ralstonia pickettii 12D]
 gi|240864788|gb|ACS62449.1| GTP-binding proten HflX [Ralstonia pickettii 12D]
          Length = 417

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           + + + ++G++NAGKS+LFNAL K        +  T  D  +  L LEG   V +SDT G
Sbjct: 200 DAFSVSLVGYTNAGKSTLFNALTKARAYAANQLFATL-DTTSRRLYLEGLGNVVLSDTVG 258


>gi|222151466|ref|YP_002560622.1| hypothetical protein MCCL_1219 [Macrococcus caseolyticus JCSC5402]
 gi|222120591|dbj|BAH17926.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 300

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +  + VAI++D   TTR+ +   L  E   +   DT GI +  
Sbjct: 10  VAIIGRPNVGKSTFMNKVLGQKVAIMSDKAQTTRNKVQGVLTTEQSQIIFIDTPGIHKPK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLL 305
            ++    +K     +   D IL +
Sbjct: 70  HMLGDYMMKVAKNTLREVDAILFM 93


>gi|126643012|ref|YP_001085996.1| GTP-binding protein [Acinetobacter baumannii ATCC 17978]
 gi|184159512|ref|YP_001847851.1| GTPase [Acinetobacter baumannii ACICU]
 gi|260558115|ref|ZP_05830325.1| GTP-binding protein HflX [Acinetobacter baumannii ATCC 19606]
 gi|332873495|ref|ZP_08441446.1| GTP-binding protein HflX [Acinetobacter baumannii 6014059]
 gi|126388896|gb|ABO13394.1| GTP-binding protein [Acinetobacter baumannii ATCC 17978]
 gi|183211106|gb|ACC58504.1| GTPase [Acinetobacter baumannii ACICU]
 gi|260408388|gb|EEX01696.1| GTP-binding protein HflX [Acinetobacter baumannii ATCC 19606]
 gi|322509424|gb|ADX04878.1| GTPase [Acinetobacter baumannii 1656-2]
 gi|323519445|gb|ADX93826.1| GTPase [Acinetobacter baumannii TCDC-AB0715]
 gi|332738320|gb|EGJ69196.1| GTP-binding protein HflX [Acinetobacter baumannii 6014059]
          Length = 444

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           + ++G++NAGKS+LFN LAK DV     +  T    L  ++ D  G +V ++DT G +R 
Sbjct: 202 VSLVGYTNAGKSTLFNILAKSDVYAADQLFATLDPTLRRLEWDGIGTVV-LADTVGFVRN 260

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL 303
              D+V  E  K T  E   A L+L
Sbjct: 261 LQHDLV--ESFKATLEETLEATLLL 283


>gi|20808271|ref|NP_623442.1| ferrous ion uptake system protein FeoB ( GTPase)
           [Thermoanaerobacter tengcongensis MB4]
 gi|20516871|gb|AAM25046.1| Ferrous ion uptake system protein FeoB (predicted GTPase)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 680

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G+ N+GK+SLFN L       V + PG T +     L  EG   K+ D  G     
Sbjct: 15  VALAGNPNSGKTSLFNELTGSRQH-VGNWPGVTVEKKEGRLKFEGIDFKVVDLPGTYSLG 73

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
              E E I R F+  +  D+++
Sbjct: 74  AYTEDEVIARNFIIYDKPDVVI 95


>gi|88810493|ref|ZP_01125750.1| GTP-binding protein [Nitrococcus mobilis Nb-231]
 gi|88792123|gb|EAR23233.1| GTP-binding protein [Nitrococcus mobilis Nb-231]
          Length = 435

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           +     QG+     R    +  +G++NAGKS+LFN L +  V I  D+   T D     +
Sbjct: 188 VRRQREQGRQARRKREFVTVSFVGYTNAGKSALFNRLTESHVYI-ADLLFATLDTTLRRI 246

Query: 263 DLEGY-LVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           +L G     I+DT G IRE    +     + T  EV  ADL+L
Sbjct: 247 ELPGSEQAIIADTVGFIRELPHQL-IAAFRSTLEEVAQADLLL 288


>gi|146296520|ref|YP_001180291.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145410096|gb|ABP67100.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 204

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV--LTID-----LDLEGY 267
           + I G SN GKSS  N + K  +A V   PG TR +    ID     +DL GY
Sbjct: 28  MCICGRSNVGKSSFINTIFKDKLAKVGSTPGKTRTINFFNIDNKFRVVDLPGY 80


>gi|312136937|ref|YP_004004274.1| gtp-binding protein [Methanothermus fervidus DSM 2088]
 gi|311224656|gb|ADP77512.1| GTP-binding protein [Methanothermus fervidus DSM 2088]
          Length = 194

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 16/84 (19%)

Query: 221 KIVILGHSNAGKSSLFNALAK----KDVAIVTDIPGTTRDV-----LTIDLDLEGYLVKI 271
           K+ I GH NAGK++L NA+ +    K +  V++IP  TR V     + I+ D    +  I
Sbjct: 8   KLGIYGHPNAGKTTLANAICEDWVGKSLGKVSEIPHETRKVNFQREVVIEKDGAKLIFDI 67

Query: 272 SDTAGIRETDDIVEKEGIKRTFLE 295
            DT GI    D        R FLE
Sbjct: 68  VDTPGITTKVDY-------RKFLE 84


>gi|307720794|ref|YP_003891934.1| GTP-binding protein Era [Sulfurimonas autotrophica DSM 16294]
 gi|306978887|gb|ADN08922.1| GTP-binding protein Era [Sulfurimonas autotrophica DSM 16294]
          Length = 294

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 44/92 (47%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N+L  + +A+V+     TR      +  E   +   DT G+ E +
Sbjct: 7   VSLIGRPNAGKSTLMNSLLGEKIAMVSQKANATRKRSNAIVMHENAQIIFVDTPGLHEKE 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            ++ +  +      + + DLI+ L  +    E
Sbjct: 67  KMLNQFMLDEALKAMGDCDLIVYLAPVTDSTE 98


>gi|304391076|ref|ZP_07373028.1| possible GTP-binding protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304325959|gb|EFL93205.1| possible GTP-binding protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 352

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 11/86 (12%)

Query: 219 GYKIVILGHSNAGKSSLFNAL---AKKDVAIVTDIPG----TTRDVLTIDLDLEGYLVKI 271
           G   V+LGHS  GKS+L NAL   A +    V ++ G    T+   + + +  +G+L+  
Sbjct: 224 GEVTVLLGHSGVGKSTLVNALVPGANRATGEVNEVTGKGRHTSTSAVALPIGSQGWLI-- 281

Query: 272 SDTAGIRETD-DIVEKEGIKRTFLEV 296
            DT G+R      V+  G+ R F E+
Sbjct: 282 -DTPGVRSFGLAHVDAAGLLRGFTEL 306


>gi|260858326|ref|YP_003232217.1| putative GTPase HflX [Escherichia coli O26:H11 str. 11368]
 gi|257756975|dbj|BAI28477.1| predicted GTPase HflX [Escherichia coli O26:H11 str. 11368]
 gi|323156010|gb|EFZ42172.1| GTP-binding proten HflX [Escherichia coli EPECa14]
          Length = 426

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 27/202 (13%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +     QG+   I  +   + ++G++NAGKS+LFN + +  V     +  T    L  ID
Sbjct: 181 VEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRID 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILL------------LKE 307
           +   G  V ++DT G IR    D+V     K T  E   A L+L             ++ 
Sbjct: 241 VADVGETV-LADTVGFIRHLPHDLV--AAFKATLQETRQATLLLHVIDAADVRVQENIEA 297

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKI 358
           +N+  E      I  + +  K D+   +    D           +S+ TG G+ +L   +
Sbjct: 298 VNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIPQLFQAL 357

Query: 359 KSILSNKFKKLPFSIPSHKRHL 380
              LS +  +    +P  +  L
Sbjct: 358 TGRLSGEVAQHTLRLPPQEGRL 379


>gi|227529207|ref|ZP_03959256.1| GTP-binding protein [Lactobacillus vaginalis ATCC 49540]
 gi|227350882|gb|EEJ41173.1| GTP-binding protein [Lactobacillus vaginalis ATCC 49540]
          Length = 290

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 21/106 (19%)

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS------SKEVLNDILFLKNDISSHIS 208
           S   G+W   LT+ +   +  L     +  QN S      SKE+L+D L      +   +
Sbjct: 66  SKRLGEW---LTYFKEHNQPVLALDSRQ--QNVSKIVTAKSKEILHDKL------AEEAA 114

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +G     IR     + +G  N GKS+L N L KK+VA+  + PG T
Sbjct: 115 KGLKKRPIR----AMCVGVPNVGKSTLLNHLVKKNVAVTGNRPGVT 156


>gi|239624090|ref|ZP_04667121.1| ferrous iron transport protein B [Clostridiales bacterium
           1_7_47_FAA]
 gi|239522121|gb|EEQ61987.1| ferrous iron transport protein B [Clostridiales bacterium
           1_7_47FAA]
          Length = 716

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N GK++LFNA     +  V + PG T + +  +   +G  +K+ D  GI       
Sbjct: 61  VGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERVEGETSYKGRPIKVIDLPGIYSLTSYT 119

Query: 285 EKEGIKRTFLEVENADLIL 303
            +E + R  +E    D+I+
Sbjct: 120 IEEKVTRKCIEDGEVDVII 138


>gi|151944581|gb|EDN62859.1| part of a pre-60S complex [Saccharomyces cerevisiae YJM789]
 gi|190408949|gb|EDV12214.1| Hypothetical protein YNR053c [Saccharomyces cerevisiae RM11-1a]
 gi|259149004|emb|CAY82248.1| Nog2p [Saccharomyces cerevisiae EC1118]
          Length = 486

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    +L+   D  G
Sbjct: 313 RKQISVGFIGYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLMKRIFLI---DCPG 369

Query: 277 I 277
           I
Sbjct: 370 I 370


>gi|323176069|gb|EFZ61661.1| GTP-binding proten HflX [Escherichia coli 1180]
          Length = 426

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 27/202 (13%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +     QG+   I  +   + ++G++NAGKS+LFN + +  V     +  T    L  ID
Sbjct: 181 VEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRID 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILL------------LKE 307
           +   G  V ++DT G IR    D+V     K T  E   A L+L             ++ 
Sbjct: 241 VADVGETV-LADTVGFIRHLPHDLV--AAFKATLQETRQATLLLHVIDAADVRVQENIEA 297

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKI 358
           +N+  E      I  + +  K D+   +    D           +S+ TG G+ +L   +
Sbjct: 298 VNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIPQLFQAL 357

Query: 359 KSILSNKFKKLPFSIPSHKRHL 380
              LS +  +    +P  +  L
Sbjct: 358 TERLSGEVAQHTLRLPPQEGRL 379


>gi|309782315|ref|ZP_07677042.1| GTP-binding protein HflX [Ralstonia sp. 5_7_47FAA]
 gi|308918933|gb|EFP64603.1| GTP-binding protein HflX [Ralstonia sp. 5_7_47FAA]
          Length = 402

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           + + + ++G++NAGKS+LFNAL K        +  T  D  +  L LEG   V +SDT G
Sbjct: 185 DAFSVSLVGYTNAGKSTLFNALTKARAYAANQLFATL-DTTSRRLYLEGLGNVVLSDTVG 243


>gi|298675659|ref|YP_003727409.1| nucleolar GTP-binding-1 domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298288647|gb|ADI74613.1| Nucleolar GTP-binding-1 domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 328

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 18/177 (10%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           KL ++  +   IV+ G+ N GKSS F ALA K    V   P TT+ +       +    +
Sbjct: 152 KLPDVDVDAPTIVVAGYPNTGKSS-FVALATKARPEVAIYPFTTKGISIGHFTRDNIRYQ 210

Query: 271 ISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKE-------INSKK----EISFP 317
           + DT G+  R   D  + E    T L+   + L+ L+         ++ +K    EI   
Sbjct: 211 VIDTPGLLDRPMSDRNDIELQAITALKHLGSVLLYLVDASETCGYTVDDQKRLYEEIKQQ 270

Query: 318 KNIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKIKSILSNK---FKKLP 370
            ++    +  KSDL      ++ D  +S+ T EG+EE++N +  ++  K   FK +P
Sbjct: 271 FDLPMFAVSNKSDLPEFQELDFVDMEMSTVTSEGVEEVVNNLVDMIGAKQEFFKDIP 327


>gi|16131995|ref|NP_418594.1| GTPase, stimulated by 50S subunit binding [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89110893|ref|AP_004673.1| predicted GTPase [Escherichia coli str. K-12 substr. W3110]
 gi|170083619|ref|YP_001732939.1| GTPase [Escherichia coli str. K-12 substr. DH10B]
 gi|238903280|ref|YP_002929076.1| putative GTPase [Escherichia coli BW2952]
 gi|462264|sp|P25519|HFLX_ECOLI RecName: Full=GTP-binding protein hflX
 gi|436156|gb|AAC43398.1| putative GTPase required for high frequency lysogenization by
           bacteriophage lambda [Escherichia coli]
 gi|537014|gb|AAA97069.1| putative GTPase required for high frequency lysogenization by
           bacteriophage lambda; TTG start codon [Escherichia coli
           str. K-12 substr. MG1655]
 gi|1790615|gb|AAC77130.1| GTPase, stimulated by 50S subunit binding [Escherichia coli str.
           K-12 substr. MG1655]
 gi|85676924|dbj|BAE78174.1| predicted GTPase [Escherichia coli str. K12 substr. W3110]
 gi|169891454|gb|ACB05161.1| predicted GTPase [Escherichia coli str. K-12 substr. DH10B]
 gi|238862450|gb|ACR64448.1| predicted GTPase [Escherichia coli BW2952]
 gi|260451000|gb|ACX41422.1| GTP-binding proten HflX [Escherichia coli DH1]
 gi|315138727|dbj|BAJ45886.1| putative GTPase HflX [Escherichia coli DH1]
          Length = 426

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 27/202 (13%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +     QG+   I  +   + ++G++NAGKS+LFN + +  V     +  T    L  ID
Sbjct: 181 VEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRID 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILL------------LKE 307
           +   G  V ++DT G IR    D+V     K T  E   A L+L             ++ 
Sbjct: 241 VADVGETV-LADTVGFIRHLPHDLV--AAFKATLQETRQATLLLHVIDAADVRVQENIEA 297

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKI 358
           +N+  E      I  + +  K D+   +    D           +S+ TG G+ +L   +
Sbjct: 298 VNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPNRVWLSAQTGAGIPQLFQAL 357

Query: 359 KSILSNKFKKLPFSIPSHKRHL 380
              LS +  +    +P  +  L
Sbjct: 358 TERLSGEVAQHTLRLPPQEGRL 379


>gi|15804762|ref|NP_290803.1| putative GTPase HflX [Escherichia coli O157:H7 EDL933]
 gi|15834403|ref|NP_313176.1| GTPase HflX [Escherichia coli O157:H7 str. Sakai]
 gi|74314658|ref|YP_313077.1| putative GTPase HflX [Shigella sonnei Ss046]
 gi|157155239|ref|YP_001465671.1| putative GTPase HflX [Escherichia coli E24377A]
 gi|157163636|ref|YP_001460954.1| putative GTPase HflX [Escherichia coli HS]
 gi|168751477|ref|ZP_02776499.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4113]
 gi|168754742|ref|ZP_02779749.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4401]
 gi|168766450|ref|ZP_02791457.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4486]
 gi|168774116|ref|ZP_02799123.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4196]
 gi|168780603|ref|ZP_02805610.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4076]
 gi|168784808|ref|ZP_02809815.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC869]
 gi|168801826|ref|ZP_02826833.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC508]
 gi|170021817|ref|YP_001726771.1| putative GTPase HflX [Escherichia coli ATCC 8739]
 gi|170681964|ref|YP_001746568.1| putative GTPase HflX [Escherichia coli SMS-3-5]
 gi|188496314|ref|ZP_03003584.1| GTP-binding protein HflX [Escherichia coli 53638]
 gi|191165587|ref|ZP_03027427.1| GTP-binding protein HflX [Escherichia coli B7A]
 gi|193066018|ref|ZP_03047076.1| GTP-binding protein HflX [Escherichia coli E22]
 gi|193070873|ref|ZP_03051805.1| GTP-binding protein HflX [Escherichia coli E110019]
 gi|194426608|ref|ZP_03059162.1| GTP-binding protein HflX [Escherichia coli B171]
 gi|194434600|ref|ZP_03066857.1| GTP-binding protein HflX [Shigella dysenteriae 1012]
 gi|194439513|ref|ZP_03071587.1| GTP-binding protein HflX [Escherichia coli 101-1]
 gi|195935963|ref|ZP_03081345.1| putative GTPase HflX [Escherichia coli O157:H7 str. EC4024]
 gi|208807477|ref|ZP_03249814.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4206]
 gi|208813758|ref|ZP_03255087.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4045]
 gi|208819504|ref|ZP_03259824.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4042]
 gi|209396581|ref|YP_002273715.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4115]
 gi|209921661|ref|YP_002295745.1| putative GTPase HflX [Escherichia coli SE11]
 gi|217325358|ref|ZP_03441442.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. TW14588]
 gi|218551443|ref|YP_002385235.1| GTPase HflX [Escherichia fergusonii ATCC 35469]
 gi|218556725|ref|YP_002389639.1| putative GTPase HflX [Escherichia coli IAI1]
 gi|218697922|ref|YP_002405589.1| putative GTPase HflX [Escherichia coli 55989]
 gi|218702870|ref|YP_002410499.1| putative GTPase HflX [Escherichia coli IAI39]
 gi|218707784|ref|YP_002415303.1| putative GTPase HflX [Escherichia coli UMN026]
 gi|253775202|ref|YP_003038033.1| GTPase HflX [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037187|ref|ZP_04871264.1| GTP-binding protein HflX [Escherichia sp. 1_1_43]
 gi|254164102|ref|YP_003047210.1| putative GTPase HflX [Escherichia coli B str. REL606]
 gi|254796192|ref|YP_003081029.1| putative GTPase HflX [Escherichia coli O157:H7 str. TW14359]
 gi|256019818|ref|ZP_05433683.1| putative GTPase HflX [Shigella sp. D9]
 gi|256025108|ref|ZP_05438973.1| putative GTPase HflX [Escherichia sp. 4_1_40B]
 gi|260847003|ref|YP_003224781.1| putative GTPase HflX [Escherichia coli O103:H2 str. 12009]
 gi|260870919|ref|YP_003237321.1| putative GTPase HflX [Escherichia coli O111:H- str. 11128]
 gi|261225293|ref|ZP_05939574.1| predicted GTPase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255455|ref|ZP_05947988.1| putative GTPase HflX [Escherichia coli O157:H7 str. FRIK966]
 gi|291285585|ref|YP_003502403.1| GTP-binding protein HflX [Escherichia coli O55:H7 str. CB9615]
 gi|293402800|ref|ZP_06646897.1| GTPase HflX [Escherichia coli FVEC1412]
 gi|293407900|ref|ZP_06651740.1| GTP-binding protein HflX [Escherichia coli B354]
 gi|293417676|ref|ZP_06660298.1| GTP-binding protein HflX [Escherichia coli B185]
 gi|293476484|ref|ZP_06664892.1| GTP-binding protein HflX [Escherichia coli B088]
 gi|297517575|ref|ZP_06935961.1| putative GTPase HflX [Escherichia coli OP50]
 gi|298378330|ref|ZP_06988214.1| GTP-binding protein HflX [Escherichia coli FVEC1302]
 gi|300816527|ref|ZP_07096748.1| GTP-binding protein HflX [Escherichia coli MS 107-1]
 gi|300821264|ref|ZP_07101412.1| GTP-binding protein HflX [Escherichia coli MS 119-7]
 gi|300899711|ref|ZP_07117937.1| GTP-binding protein HflX [Escherichia coli MS 198-1]
 gi|300906002|ref|ZP_07123726.1| GTP-binding protein HflX [Escherichia coli MS 84-1]
 gi|300920803|ref|ZP_07137204.1| GTP-binding protein HflX [Escherichia coli MS 115-1]
 gi|300922421|ref|ZP_07138541.1| GTP-binding protein HflX [Escherichia coli MS 182-1]
 gi|300929280|ref|ZP_07144756.1| GTP-binding protein HflX [Escherichia coli MS 187-1]
 gi|300940660|ref|ZP_07155221.1| GTP-binding protein HflX [Escherichia coli MS 21-1]
 gi|300949132|ref|ZP_07163174.1| GTP-binding protein HflX [Escherichia coli MS 116-1]
 gi|300957832|ref|ZP_07170010.1| GTP-binding protein HflX [Escherichia coli MS 175-1]
 gi|301023429|ref|ZP_07187212.1| GTP-binding protein HflX [Escherichia coli MS 69-1]
 gi|301027995|ref|ZP_07191279.1| GTP-binding protein HflX [Escherichia coli MS 196-1]
 gi|301302589|ref|ZP_07208719.1| GTP-binding protein HflX [Escherichia coli MS 124-1]
 gi|301325936|ref|ZP_07219357.1| GTP-binding protein HflX [Escherichia coli MS 78-1]
 gi|301646618|ref|ZP_07246484.1| GTP-binding protein HflX [Escherichia coli MS 146-1]
 gi|307140867|ref|ZP_07500223.1| putative GTPase HflX [Escherichia coli H736]
 gi|307314879|ref|ZP_07594471.1| GTP-binding proten HflX [Escherichia coli W]
 gi|309796984|ref|ZP_07691384.1| GTP-binding protein HflX [Escherichia coli MS 145-7]
 gi|312965846|ref|ZP_07780072.1| GTP-binding proten HflX [Escherichia coli 2362-75]
 gi|312974019|ref|ZP_07788190.1| GTP-binding proten HflX [Escherichia coli 1827-70]
 gi|331644920|ref|ZP_08346037.1| GTP-binding protein HflX [Escherichia coli H736]
 gi|331656001|ref|ZP_08356989.1| GTP-binding protein HflX [Escherichia coli M718]
 gi|331665837|ref|ZP_08366731.1| GTP-binding protein HflX [Escherichia coli TA143]
 gi|331671078|ref|ZP_08371911.1| GTP-binding protein HflX [Escherichia coli TA271]
 gi|331680303|ref|ZP_08380962.1| GTP-binding protein HflX [Escherichia coli H591]
 gi|331681192|ref|ZP_08381829.1| GTP-binding protein HflX [Escherichia coli H299]
 gi|332280957|ref|ZP_08393370.1| GTP-binding protein HflX [Shigella sp. D9]
 gi|12519158|gb|AAG59369.1|AE005650_8 GTP - binding subunit of protease specific for phage lambda cII
           repressor [Escherichia coli O157:H7 str. EDL933]
 gi|13364626|dbj|BAB38572.1| GTP - binding subunit of protease specific for phage lambda cII
           repressor [Escherichia coli O157:H7 str. Sakai]
 gi|73858135|gb|AAZ90842.1| GTP-binding subunit of protease specific for phage lambda cII
           repressor [Shigella sonnei Ss046]
 gi|157069316|gb|ABV08571.1| GTP-binding protein HflX [Escherichia coli HS]
 gi|157077269|gb|ABV16977.1| GTP-binding protein HflX [Escherichia coli E24377A]
 gi|169756745|gb|ACA79444.1| GTP-binding proten HflX [Escherichia coli ATCC 8739]
 gi|170519682|gb|ACB17860.1| GTP-binding protein HflX [Escherichia coli SMS-3-5]
 gi|187770244|gb|EDU34088.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4196]
 gi|188014507|gb|EDU52629.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4113]
 gi|188491513|gb|EDU66616.1| GTP-binding protein HflX [Escherichia coli 53638]
 gi|189001638|gb|EDU70624.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4076]
 gi|189357854|gb|EDU76273.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4401]
 gi|189364080|gb|EDU82499.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4486]
 gi|189374971|gb|EDU93387.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC869]
 gi|189376070|gb|EDU94486.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC508]
 gi|190904282|gb|EDV63991.1| GTP-binding protein HflX [Escherichia coli B7A]
 gi|192926341|gb|EDV80977.1| GTP-binding protein HflX [Escherichia coli E22]
 gi|192955819|gb|EDV86290.1| GTP-binding protein HflX [Escherichia coli E110019]
 gi|194415347|gb|EDX31615.1| GTP-binding protein HflX [Escherichia coli B171]
 gi|194417185|gb|EDX33297.1| GTP-binding protein HflX [Shigella dysenteriae 1012]
 gi|194421512|gb|EDX37525.1| GTP-binding protein HflX [Escherichia coli 101-1]
 gi|208727278|gb|EDZ76879.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4206]
 gi|208735035|gb|EDZ83722.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4045]
 gi|208739627|gb|EDZ87309.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4042]
 gi|209157981|gb|ACI35414.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4115]
 gi|209750268|gb|ACI73441.1| GTP - binding subunit of protease specific for phage lambda cII
           repressor [Escherichia coli]
 gi|209750270|gb|ACI73442.1| GTP - binding subunit of protease specific for phage lambda cII
           repressor [Escherichia coli]
 gi|209750272|gb|ACI73443.1| GTP - binding subunit of protease specific for phage lambda cII
           repressor [Escherichia coli]
 gi|209750274|gb|ACI73444.1| GTP - binding subunit of protease specific for phage lambda cII
           repressor [Escherichia coli]
 gi|209750276|gb|ACI73445.1| GTP - binding subunit of protease specific for phage lambda cII
           repressor [Escherichia coli]
 gi|209914920|dbj|BAG79994.1| hypothetical phage protein [Escherichia coli SE11]
 gi|217321579|gb|EEC30003.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. TW14588]
 gi|218354654|emb|CAV01646.1| putative GTPase [Escherichia coli 55989]
 gi|218358985|emb|CAQ91645.1| putative GTPase [Escherichia fergusonii ATCC 35469]
 gi|218363494|emb|CAR01148.1| putative GTPase [Escherichia coli IAI1]
 gi|218372856|emb|CAR20736.1| putative GTPase [Escherichia coli IAI39]
 gi|218434881|emb|CAR15819.1| putative GTPase [Escherichia coli UMN026]
 gi|226840293|gb|EEH72295.1| GTP-binding protein HflX [Escherichia sp. 1_1_43]
 gi|242379695|emb|CAQ34519.1| GTPase associated with the 50S subunit of the ribosome [Escherichia
           coli BL21(DE3)]
 gi|253326246|gb|ACT30848.1| GTP-binding proten HflX [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253976003|gb|ACT41674.1| predicted GTPase [Escherichia coli B str. REL606]
 gi|253980159|gb|ACT45829.1| predicted GTPase [Escherichia coli BL21(DE3)]
 gi|254595592|gb|ACT74953.1| predicted GTPase [Escherichia coli O157:H7 str. TW14359]
 gi|257762150|dbj|BAI33647.1| predicted GTPase HflX [Escherichia coli O103:H2 str. 12009]
 gi|257767275|dbj|BAI38770.1| predicted GTPase HflX [Escherichia coli O111:H- str. 11128]
 gi|284924355|emb|CBG37471.1| GTP-binding protein [Escherichia coli 042]
 gi|290765458|gb|ADD59419.1| GTP-binding protein HflX [Escherichia coli O55:H7 str. CB9615]
 gi|291320937|gb|EFE60379.1| GTP-binding protein HflX [Escherichia coli B088]
 gi|291429715|gb|EFF02729.1| GTPase HflX [Escherichia coli FVEC1412]
 gi|291430394|gb|EFF03392.1| GTP-binding protein HflX [Escherichia coli B185]
 gi|291472151|gb|EFF14633.1| GTP-binding protein HflX [Escherichia coli B354]
 gi|298280664|gb|EFI22165.1| GTP-binding protein HflX [Escherichia coli FVEC1302]
 gi|299878905|gb|EFI87116.1| GTP-binding protein HflX [Escherichia coli MS 196-1]
 gi|300315463|gb|EFJ65247.1| GTP-binding protein HflX [Escherichia coli MS 175-1]
 gi|300356722|gb|EFJ72592.1| GTP-binding protein HflX [Escherichia coli MS 198-1]
 gi|300397016|gb|EFJ80554.1| GTP-binding protein HflX [Escherichia coli MS 69-1]
 gi|300402169|gb|EFJ85707.1| GTP-binding protein HflX [Escherichia coli MS 84-1]
 gi|300412226|gb|EFJ95536.1| GTP-binding protein HflX [Escherichia coli MS 115-1]
 gi|300421240|gb|EFK04551.1| GTP-binding protein HflX [Escherichia coli MS 182-1]
 gi|300451380|gb|EFK15000.1| GTP-binding protein HflX [Escherichia coli MS 116-1]
 gi|300454548|gb|EFK18041.1| GTP-binding protein HflX [Escherichia coli MS 21-1]
 gi|300462773|gb|EFK26266.1| GTP-binding protein HflX [Escherichia coli MS 187-1]
 gi|300526153|gb|EFK47222.1| GTP-binding protein HflX [Escherichia coli MS 119-7]
 gi|300530757|gb|EFK51819.1| GTP-binding protein HflX [Escherichia coli MS 107-1]
 gi|300842114|gb|EFK69874.1| GTP-binding protein HflX [Escherichia coli MS 124-1]
 gi|300847289|gb|EFK75049.1| GTP-binding protein HflX [Escherichia coli MS 78-1]
 gi|301075165|gb|EFK89971.1| GTP-binding protein HflX [Escherichia coli MS 146-1]
 gi|306905682|gb|EFN36211.1| GTP-binding proten HflX [Escherichia coli W]
 gi|308119397|gb|EFO56659.1| GTP-binding protein HflX [Escherichia coli MS 145-7]
 gi|309704678|emb|CBJ04028.1| GTP-binding protein [Escherichia coli ETEC H10407]
 gi|310331553|gb|EFP98809.1| GTP-binding proten HflX [Escherichia coli 1827-70]
 gi|312289089|gb|EFR16983.1| GTP-binding proten HflX [Escherichia coli 2362-75]
 gi|315063487|gb|ADT77814.1| predicted GTPase [Escherichia coli W]
 gi|315255517|gb|EFU35485.1| GTP-binding protein HflX [Escherichia coli MS 85-1]
 gi|320180686|gb|EFW55613.1| GTP-binding protein HflX [Shigella boydii ATCC 9905]
 gi|320190695|gb|EFW65345.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC1212]
 gi|320193553|gb|EFW68190.1| GTP-binding protein HflX [Escherichia coli WV_060327]
 gi|320200697|gb|EFW75283.1| GTP-binding protein HflX [Escherichia coli EC4100B]
 gi|320638931|gb|EFX08577.1| GTPase HflX [Escherichia coli O157:H7 str. G5101]
 gi|320644300|gb|EFX13365.1| GTPase HflX [Escherichia coli O157:H- str. 493-89]
 gi|320649618|gb|EFX18142.1| GTPase HflX [Escherichia coli O157:H- str. H 2687]
 gi|320655014|gb|EFX22975.1| GTPase HflX [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660521|gb|EFX27982.1| GTPase HflX [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665790|gb|EFX32827.1| GTPase HflX [Escherichia coli O157:H7 str. LSU-61]
 gi|323161962|gb|EFZ47834.1| GTP-binding proten HflX [Escherichia coli E128010]
 gi|323166655|gb|EFZ52413.1| GTP-binding proten HflX [Shigella sonnei 53G]
 gi|323171605|gb|EFZ57251.1| GTP-binding proten HflX [Escherichia coli LT-68]
 gi|323182279|gb|EFZ67689.1| GTP-binding proten HflX [Escherichia coli 1357]
 gi|323380434|gb|ADX52702.1| GTP-binding proten HflX [Escherichia coli KO11]
 gi|323935403|gb|EGB31747.1| GTP-binding protein HflX [Escherichia coli E1520]
 gi|323940092|gb|EGB36286.1| GTP-binding protein HflX [Escherichia coli E482]
 gi|323946021|gb|EGB42058.1| GTP-binding protein HflX [Escherichia coli H120]
 gi|323960322|gb|EGB55962.1| GTP-binding protein HflX [Escherichia coli H489]
 gi|323965559|gb|EGB61013.1| GTP-binding protein HflX [Escherichia coli M863]
 gi|323970572|gb|EGB65831.1| GTP-binding protein HflX [Escherichia coli TA007]
 gi|323975486|gb|EGB70587.1| GTP-binding protein HflX [Escherichia coli TW10509]
 gi|324005236|gb|EGB74455.1| GTP-binding protein HflX [Escherichia coli MS 57-2]
 gi|324019351|gb|EGB88570.1| GTP-binding protein HflX [Escherichia coli MS 117-3]
 gi|324112230|gb|EGC06208.1| GTP-binding protein HflX [Escherichia fergusonii B253]
 gi|324118738|gb|EGC12630.1| GTP-binding protein HflX [Escherichia coli E1167]
 gi|325499709|gb|EGC97568.1| putative GTPase HflX [Escherichia fergusonii ECD227]
 gi|326345495|gb|EGD69238.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. 1125]
 gi|326346648|gb|EGD70382.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. 1044]
 gi|327250113|gb|EGE61832.1| GTP-binding proten HflX [Escherichia coli STEC_7v]
 gi|331035895|gb|EGI08133.1| GTP-binding protein HflX [Escherichia coli H736]
 gi|331046355|gb|EGI18445.1| GTP-binding protein HflX [Escherichia coli M718]
 gi|331056888|gb|EGI28882.1| GTP-binding protein HflX [Escherichia coli TA143]
 gi|331061667|gb|EGI33593.1| GTP-binding protein HflX [Escherichia coli TA271]
 gi|331071766|gb|EGI43102.1| GTP-binding protein HflX [Escherichia coli H591]
 gi|331081413|gb|EGI52574.1| GTP-binding protein HflX [Escherichia coli H299]
 gi|332083711|gb|EGI88929.1| GTP-binding proten HflX [Shigella dysenteriae 155-74]
 gi|332103309|gb|EGJ06655.1| GTP-binding protein HflX [Shigella sp. D9]
 gi|332346250|gb|AEE59584.1| GTP-binding protein HflX [Escherichia coli UMNK88]
 gi|333010321|gb|EGK29754.1| GTP-binding proten HflX [Shigella flexneri VA-6]
 gi|333011155|gb|EGK30569.1| GTP-binding proten HflX [Shigella flexneri K-272]
 gi|333012650|gb|EGK32030.1| GTP-binding proten HflX [Shigella flexneri K-227]
          Length = 426

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 27/202 (13%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +     QG+   I  +   + ++G++NAGKS+LFN + +  V     +  T    L  ID
Sbjct: 181 VEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRID 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILL------------LKE 307
           +   G  V ++DT G IR    D+V     K T  E   A L+L             ++ 
Sbjct: 241 VADVGETV-LADTVGFIRHLPHDLV--AAFKATLQETRQATLLLHVIDAADVRVQENIEA 297

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKI 358
           +N+  E      I  + +  K D+   +    D           +S+ TG G+ +L   +
Sbjct: 298 VNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIPQLFQAL 357

Query: 359 KSILSNKFKKLPFSIPSHKRHL 380
              LS +  +    +P  +  L
Sbjct: 358 TERLSGEVAQHTLRLPPQEGRL 379


>gi|256851187|ref|ZP_05556576.1| GTP-binding protein Era [Lactobacillus jensenii 27-2-CHN]
 gi|260660611|ref|ZP_05861526.1| GTP-binding protein Era [Lactobacillus jensenii 115-3-CHN]
 gi|282934653|ref|ZP_06339896.1| GTP-binding protein Era [Lactobacillus jensenii 208-1]
 gi|297206052|ref|ZP_06923447.1| GTP-binding protein Era [Lactobacillus jensenii JV-V16]
 gi|256616249|gb|EEU21437.1| GTP-binding protein Era [Lactobacillus jensenii 27-2-CHN]
 gi|260548333|gb|EEX24308.1| GTP-binding protein Era [Lactobacillus jensenii 115-3-CHN]
 gi|281301228|gb|EFA93529.1| GTP-binding protein Era [Lactobacillus jensenii 208-1]
 gi|297149178|gb|EFH29476.1| GTP-binding protein Era [Lactobacillus jensenii JV-V16]
          Length = 302

 Score = 37.0 bits (84), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 41/86 (47%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + V I ++   TTR+ ++     E       DT GI +  
Sbjct: 12  VALIGRPNVGKSTLMNHLIGQKVVITSNKSQTTRNKISGIFTTENLQAVFVDTPGIHKPQ 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
           + ++    K +   + + DL+  + E
Sbjct: 72  NKLDDYMDKASLSSLNDVDLVFFMVE 97


>gi|254479659|ref|ZP_05092959.1| ferrous iron transport protein B [Carboxydibrachium pacificum DSM
           12653]
 gi|214034400|gb|EEB75174.1| ferrous iron transport protein B [Carboxydibrachium pacificum DSM
           12653]
          Length = 680

 Score = 37.0 bits (84), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G+ N+GK+SLFN L       V + PG T +     L  EG   K+ D  G     
Sbjct: 15  VALAGNPNSGKTSLFNELTGSRQH-VGNWPGVTVEKKEGRLKFEGIDFKVVDLPGTYSLG 73

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
              E E I R F+  +  D+++
Sbjct: 74  AYTEDEVIARNFIIYDKPDVVI 95


>gi|260785268|ref|XP_002587684.1| hypothetical protein BRAFLDRAFT_92731 [Branchiostoma floridae]
 gi|229272835|gb|EEN43695.1| hypothetical protein BRAFLDRAFT_92731 [Branchiostoma floridae]
          Length = 688

 Score = 37.0 bits (84), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 7/103 (6%)

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKL----GEIIRNGYKIVILGHSNAGKSSLFNAL 239
           V+N +   +L     +K+ I S    G++    G+  +  Y IV+LG + +GKS+  N++
Sbjct: 254 VKNMAGNYILK--YLVKDGIVSIEKHGEMKAEAGQRKQPPYNIVLLGRTGSGKSATGNSI 311

Query: 240 AKKDVAIVTDIPGT-TRDVLTIDLDLEGYLVKISDTAGIRETD 281
               V   +D+ G+ T++       + GY++ + DT G  +TD
Sbjct: 312 VGDRVFEESDMGGSQTKNCDNAKACINGYILNVIDTPGFADTD 354


>gi|71064931|ref|YP_263658.1| GTP - binding protein, phage lambda cII repressor [Psychrobacter
           arcticus 273-4]
 gi|71037916|gb|AAZ18224.1| probable GTP - binding protein, possible phage lambda cII repressor
           [Psychrobacter arcticus 273-4]
          Length = 489

 Score = 37.0 bits (84), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 37/247 (14%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +QG+      +   I ++G++NAGKS+LFN L  +++    D    T D     LD +G 
Sbjct: 188 AQGRARRQKSDVPTISLVGYTNAGKSTLFNRLVDENI-YAADKLFATLDPTLRRLDWQGV 246

Query: 268 -LVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEI- 314
             V + DT G +R    ++V  E    T  E   ADL+L         + ++I + K++ 
Sbjct: 247 GRVVLVDTVGFVRHLPHELV--ESFHATLEETLEADLLLHVIDSSSEDMHEQIQAVKDVL 304

Query: 315 -SFPKNIDFIFIGTKSDL--------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                ++  + +  K DL        Y++  +     +SS    G+EEL   ++ +L+  
Sbjct: 305 AEIDNDVPVLNVYNKIDLTDEPARIGYASEGQPNRVYVSSRENLGMEELSLAVQQLLTGT 364

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEK---DCGLDIIAENLRLASVSLGKITG 421
                 ++P      Y+  Q    L E+  + E+   D G + +   +RL S  L ++ G
Sbjct: 365 LTTFDLTLP------YNAGQLKNALYELGVIQEESYDDSGHECL--TIRLPSDRLRQLLG 416

Query: 422 CVDVEQL 428
             ++E L
Sbjct: 417 QANLEPL 423


>gi|323693176|ref|ZP_08107394.1| ferrous iron transporter B [Clostridium symbiosum WAL-14673]
 gi|323502659|gb|EGB18503.1| ferrous iron transporter B [Clostridium symbiosum WAL-14673]
          Length = 689

 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N GK++LFNA     +  V + PG T + +  +   +G  +K+ D  GI       
Sbjct: 37  VGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERVEGETSYKGRPIKVIDLPGIYSLTSYT 95

Query: 285 EKEGIKRTFLEVENADLIL 303
            +E + R  +E    D+I+
Sbjct: 96  IEERVTRKCIEDNEVDVIV 114


>gi|256273332|gb|EEU08270.1| Nog2p [Saccharomyces cerevisiae JAY291]
          Length = 487

 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    +L+   D  G
Sbjct: 314 RKQISVGFIGYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLMKRIFLI---DCPG 370

Query: 277 I 277
           I
Sbjct: 371 I 371


>gi|228940781|ref|ZP_04103342.1| hypothetical protein bthur0008_34230 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973700|ref|ZP_04134280.1| hypothetical protein bthur0003_34560 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980258|ref|ZP_04140570.1| hypothetical protein bthur0002_34270 [Bacillus thuringiensis Bt407]
 gi|228779490|gb|EEM27745.1| hypothetical protein bthur0002_34270 [Bacillus thuringiensis Bt407]
 gi|228786023|gb|EEM34022.1| hypothetical protein bthur0003_34560 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818896|gb|EEM64960.1| hypothetical protein bthur0008_34230 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326941414|gb|AEA17310.1| GTP-binding protein hflX [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 424

 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           ++I ++G++NAGKS+LFN L + +     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQISLIGYTNAGKSTLFNRLTEAN-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|225028674|ref|ZP_03717866.1| hypothetical protein EUBHAL_02953 [Eubacterium hallii DSM 3353]
 gi|224953984|gb|EEG35193.1| hypothetical protein EUBHAL_02953 [Eubacterium hallii DSM 3353]
          Length = 197

 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++   G SN GKSSL NAL  +K +A  +  PG T+ +   +++ E Y+V +      + 
Sbjct: 25  EVAFAGKSNVGKSSLINALVNRKSLARTSGQPGKTQTINFYNVNEEMYIVDLPGYGYAKV 84

Query: 280 TDDIVEKEG--IKRTFLEVENADLILLLKEINSK 311
           + ++  K G  I+      E   ++ LL ++  K
Sbjct: 85  SKEVAAKWGPMIENYLHTSEQLRMVFLLIDLRHK 118


>gi|219856299|ref|YP_002473421.1| hypothetical protein CKR_2956 [Clostridium kluyveri NBRC 12016]
 gi|219570023|dbj|BAH08007.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 201

 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 13/86 (15%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR--DVLTID-----LDLEGY-LVKIS 272
           I  +G SN GKSSL NAL  +K +  V+  PG TR  +   I+     +DL GY   KIS
Sbjct: 30  IAFVGRSNVGKSSLINALTNRKKLVKVSGTPGKTRLINFFLINNEFYFVDLPGYGYAKIS 89

Query: 273 DT----AGIRETDDIVEKEGIKRTFL 294
            T     G    D +  +E +KR  L
Sbjct: 90  KTEKKSWGKVVEDYLRGREELKRVIL 115


>gi|163791428|ref|ZP_02185837.1| GTP-binding protein Era [Carnobacterium sp. AT7]
 gi|159873292|gb|EDP67387.1| GTP-binding protein Era [Carnobacterium sp. AT7]
          Length = 299

 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N +  + +AI++D   TTR+ +  I    E  +V I DT GI + 
Sbjct: 9   VSIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTTPESQIVFI-DTPGIHKP 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
              +    +   F      D+IL +  I  K+
Sbjct: 68  KHRLGDFMVDSAFSAFREVDVILFMVNIAEKR 99


>gi|160935821|ref|ZP_02083196.1| hypothetical protein CLOBOL_00712 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441565|gb|EDP19275.1| hypothetical protein CLOBOL_00712 [Clostridium bolteae ATCC
           BAA-613]
          Length = 699

 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GK++LFNA     +  V + PG T + +  +   +G  +K+ D  G
Sbjct: 36  RTPITVGFVGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERVEGETSYKGRPIKVIDLPG 94

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
           I        +E + R  +E    D+I+
Sbjct: 95  IYSLTSYTIEEKVTRKCIEDGGVDVII 121


>gi|45359205|ref|NP_988762.1| ATP/GTP-binding motif-containing protein [Methanococcus maripaludis
           S2]
 gi|45048080|emb|CAF31198.1| ATP/GTP-binding site motif A (P-loop):Small GTP-binding protein
           domain [Methanococcus maripaludis S2]
          Length = 184

 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 28/36 (77%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +KI ++G  N+GKSSL N++  K+++ V+++ GTT+
Sbjct: 6   FKIALVGPENSGKSSLVNSIFGKNISEVSEVGGTTK 41


>gi|33865612|ref|NP_897171.1| hypothetical protein SYNW1078 [Synechococcus sp. WH 8102]
 gi|33632782|emb|CAE07593.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 531

 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 5/95 (5%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKI 271
           ++ R    +V+ G  ++GK+SL  AL +  V  V    G+TR   +  L L+G    +++
Sbjct: 127 DLARGDLVVVVFGTGSSGKTSLIRALLQDMVGDVAAAMGSTRSTPSYRLRLKGMERGLRL 186

Query: 272 SDTAGIRET-DDIVEKEGIKRTFLEVENADLILLL 305
            DT GI E  D  + +E  +R   +   ADL+L++
Sbjct: 187 VDTPGILEAGDGGLNRE--ERARQQAVRADLLLVV 219


>gi|86140695|ref|ZP_01059254.1| putative GTP-binding protein [Leeuwenhoekiella blandensis MED217]
 gi|85832637|gb|EAQ51086.1| putative GTP-binding protein [Leeuwenhoekiella blandensis MED217]
          Length = 309

 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NA+  + ++I+T    TTR  +   ++ + +    SDT GI +    
Sbjct: 25  IIGNPNVGKSTLMNAIVGERLSIITSKAQTTRHRILGIVNGDDFQAIFSDTPGIIKPAYE 84

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKK 312
           ++   +       E+AD+++ + E+  K+
Sbjct: 85  LQASMMDFVKSAFEDADVLIYMVELGEKE 113


>gi|329946930|ref|ZP_08294342.1| ribosome biogenesis GTPase Era [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526741|gb|EGF53754.1| ribosome biogenesis GTPase Era [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 424

 Score = 36.6 bits (83), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+   I+G  NAGKS+L NAL    +AI +  P TTR  +   +  E   + + D
Sbjct: 121 EDFRAGFA-CIVGRPNAGKSTLTNALVGAKIAITSGRPQTTRHNVRGVIHKEKAQIVLVD 179

Query: 274 TAGI 277
           T G+
Sbjct: 180 TPGL 183


>gi|295399792|ref|ZP_06809773.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111696|ref|YP_003990012.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
           Y4.1MC1]
 gi|294978195|gb|EFG53792.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216797|gb|ADP75401.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
           Y4.1MC1]
          Length = 281

 Score = 36.6 bits (83), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LA +++A   D PG T+    I +   G  +++ DT GI
Sbjct: 123 RALIVGIPNVGKSTLINRLAGRNIAKTGDKPGVTKAQQWIKV---GKEMELLDTPGI 176


>gi|126338140|ref|XP_001367849.1| PREDICTED: similar to Mitofusin 1 [Monodelphis domestica]
          Length = 739

 Score = 36.6 bits (83), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 15/120 (12%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213
           +++++ Q +D +T   SF+EA     E   +   ++++ L +I   KN +S       +G
Sbjct: 19  ITAIFDQLLDYVTEGTSFVEATFKNPE---LDRIATEDDLAEIQGYKNKLSV------IG 69

Query: 214 EII-RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI---DLDLEGYLV 269
           E++ R   K+   G +++GKSS+ NA+   D  + + I  TT   L++   D D +GYL+
Sbjct: 70  EVLSRRHMKVAFFGRTSSGKSSVINAML-WDRVLPSGIGHTTNCFLSVEGTDGD-KGYLM 127


>gi|34849441|gb|AAP58940.1| putative GTPase [Spiroplasma kunkelii CR2-3x]
          Length = 296

 Score = 36.6 bits (83), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           K++++G  N GKS+  NAL K++   V + PG T+    + L+   + + + DT GI
Sbjct: 124 KVMVIGIPNVGKSTFINALIKRNSTRVGNKPGVTKGQQWLKLN---HQIDLVDTPGI 177


>gi|66805837|ref|XP_636640.1| hypothetical protein DDB_G0288609 [Dictyostelium discoideum AX4]
 gi|60465029|gb|EAL63136.1| hypothetical protein DDB_G0288609 [Dictyostelium discoideum AX4]
          Length = 398

 Score = 36.6 bits (83), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 8/154 (5%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
           YG  ++ + H  + +E       EE  Q    K V+        DI+    Q  L   I 
Sbjct: 51  YGVNVNPIQHQINILEEQDKKIREERAQPIKRKRVVRSYNITPPDITEQSMQ--LETPIH 108

Query: 218 N----GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           N       + I+G  NAGKS+L N++  + +  V+    TTRD +      +   +   D
Sbjct: 109 NENAKTLNVAIIGAPNAGKSTLVNSIVGEKICAVSPTEHTTRDAVLGIYSKDDTQILFHD 168

Query: 274 TAGIRETDDIVE--KEGIKRTFLEVENADLILLL 305
           T GI +  + +   +E +   +  V+ AD++LL+
Sbjct: 169 TPGIIKNFNRMAHVREFVNLAWGVVKEADIVLLV 202


>gi|332530167|ref|ZP_08406115.1| ferrous iron transport protein B [Hylemonella gracilis ATCC 19624]
 gi|332040359|gb|EGI76737.1| ferrous iron transport protein B [Hylemonella gracilis ATCC 19624]
          Length = 404

 Score = 36.6 bits (83), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 25/123 (20%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL------------- 264
           + Y I ++G++NAGKS+LFNAL K   A   D    T D  T  L L             
Sbjct: 192 DAYNISLVGYTNAGKSTLFNALVKAR-AYAADQLFATLDTTTRQLYLAADEAAAGQAPDP 250

Query: 265 ------EGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
                  G  V +SDT G IR+    +  +  + T  E  +ADL+L    +      +FP
Sbjct: 251 LLMGAPAGRSVSLSDTVGFIRDLPHGL-IDAFQATLQEAVDADLLL---HVVDAANPNFP 306

Query: 318 KNI 320
           + I
Sbjct: 307 EQI 309


>gi|299141483|ref|ZP_07034619.1| GTP-binding protein Era [Prevotella oris C735]
 gi|298576819|gb|EFI48689.1| GTP-binding protein Era [Prevotella oris C735]
          Length = 293

 Score = 36.6 bits (83), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 4/100 (4%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNQLIGERISIATFKAQTTRHRIMGIVNTDDCQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
           +++  +  +   + +AD++L + ++    E    KN+DF+
Sbjct: 69  MQEMMLAFSESALTDADILLYVTDVVENPE----KNMDFL 104


>gi|293604548|ref|ZP_06686953.1| GTP-binding protein HflX [Achromobacter piechaudii ATCC 43553]
 gi|292817129|gb|EFF76205.1| GTP-binding protein HflX [Achromobacter piechaudii ATCC 43553]
          Length = 368

 Score = 36.6 bits (83), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG-IRE 279
           + ++G++NAGKS+LFNAL + D +   D    T D  T  + +EG   V +SDT G IR+
Sbjct: 192 VSLVGYTNAGKSTLFNALTRAD-SYAADQLFATLDTTTRRIWIEGAGSVVVSDTVGFIRD 250

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
               +     + T  E  +ADL+L
Sbjct: 251 LPHGL-IAAFRATLEETVHADLLL 273


>gi|296140452|ref|YP_003647695.1| GTP-binding protein Era [Tsukamurella paurometabola DSM 20162]
 gi|296028586|gb|ADG79356.1| GTP-binding protein Era [Tsukamurella paurometabola DSM 20162]
          Length = 318

 Score = 36.6 bits (83), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    VAI +  P TTR  +   ++     + + DT G
Sbjct: 16  RSGF-VCFVGRPNTGKSTLTNALVGSKVAITSSRPQTTRSTIRGIVNRPNCQLVLVDTPG 74

Query: 277 I 277
           +
Sbjct: 75  L 75


>gi|332702984|ref|ZP_08423072.1| GTP-binding proten HflX [Desulfovibrio africanus str. Walvis Bay]
 gi|332553133|gb|EGJ50177.1| GTP-binding proten HflX [Desulfovibrio africanus str. Walvis Bay]
          Length = 552

 Score = 36.6 bits (83), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 22/151 (14%)

Query: 217 RNGYKIVIL-GHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           ++G  +V L G++NAGKS+L N L       +D    T  P + R    I    E  +V 
Sbjct: 373 KSGVPVVALVGYTNAGKSTLLNTLTGSVVLAEDKLFATLDPTSRR----IRFPREREVV- 427

Query: 271 ISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF----I 325
           ++DT G IR+  D + +E  + T  E+E+ADL++ + +  S +  S    ++FI     +
Sbjct: 428 LTDTVGFIRQLPDEL-REAFQATLEELESADLLVHVADAGSPELESQVAAVEFILGEMEL 486

Query: 326 GTKSDL-----YSTYTEEYDHLISSFTGEGL 351
           G  + +     + T  EE   ++ +   EG+
Sbjct: 487 GKIARVLVLNKWDTLREEGRQIVRNIYPEGI 517


>gi|310764814|gb|ADP09764.1| GTP-binding protein Era [Erwinia sp. Ejp617]
          Length = 301

 Score = 36.6 bits (83), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 37/193 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  + + +  EG Y     DT G+   
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRI-MGIHTEGQYQAIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             + EK  I R             L    +   I   + + F+  GT+      +T + +
Sbjct: 68  --MEEKRAINR-------------LMNRAASSSIGDVEMVIFVVEGTR------WTADDE 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++      +  L  INK+ +I ++K   LP        HL  L Q + ++++  ++ E
Sbjct: 107 MVLNKLKDGKVPVLLAINKVDNI-TDKSILLP--------HLQFLGQQMNFMDVVPISAE 157

Query: 398 KDCGLDIIAENLR 410
           K   +D IA  +R
Sbjct: 158 KGSNVDTIASIVR 170


>gi|332653415|ref|ZP_08419160.1| GTP-binding protein HflX [Ruminococcaceae bacterium D16]
 gi|332518561|gb|EGJ48164.1| GTP-binding protein HflX [Ruminococcaceae bacterium D16]
          Length = 429

 Score = 36.6 bits (83), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 31/179 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G++NAGKS+L N L         +IP   R  L   LD     ++ISDT  +  +D
Sbjct: 207 VAIVGYTNAGKSTLLNKLTG------AEIPANNR--LFDTLDTTTRTLEISDTCTVLLSD 258

Query: 282 DI--VEK------EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG------- 326
            +  + K      E  K T  E+  ADL+L + + ++ +     + +D + +        
Sbjct: 259 TVGFIRKLPHHLVEAFKATLEELSFADLLLHVIDASNPEWREQAQVVDQLILELGAEQTP 318

Query: 327 -----TKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                 K D ++     +      IS+ TGEGL++L+  I   L +  K++   +P  K
Sbjct: 319 RIEVFNKCDKWTGEIRPHGEDIVSISAKTGEGLDKLLEAIGKRLDSGAKRVTIHLPYDK 377


>gi|296189624|ref|XP_002742869.1| PREDICTED: ras and EF-hand domain-containing protein [Callithrix
           jacchus]
          Length = 715

 Score = 36.6 bits (83), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 33/154 (21%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-------LDLEGYLV 269
           +  YKIV+ G +  GKSS    L K       +  G T   L +D       +D E  ++
Sbjct: 514 QKAYKIVLAGDAAVGKSSFLMRLCK------NEFRGNTSATLGVDFQMKTLIVDGERTVL 567

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFP 317
           ++ DTAG            I +++     AD +LLL ++  +K            E +  
Sbjct: 568 QLWDTAGQERF------RSIAKSYF--RKADGVLLLYDVTCEKSFLNVREWVDMVEDAAH 619

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           +++  + +G K+DL  T   E    +    GE L
Sbjct: 620 ESVPIMLVGNKADLRDTAAGEGQKCVPGHFGEKL 653


>gi|110004282|emb|CAK98620.1| putative gtp binding protein [Spiroplasma citri]
          Length = 296

 Score = 36.6 bits (83), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           K++++G  N GKS+  NAL K++   V + PG T+    + L+   + + + DT GI
Sbjct: 124 KVMVIGIPNVGKSTFINALIKRNSTRVGNKPGVTKGQQWLKLN---HQIDLVDTPGI 177


>gi|148652187|ref|YP_001279280.1| GTP-binding protein Era [Psychrobacter sp. PRwf-1]
 gi|148571271|gb|ABQ93330.1| GTP-binding protein Era [Psychrobacter sp. PRwf-1]
          Length = 339

 Score = 36.6 bits (83), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L E  R GY + I+G  N GKS+L N +  + ++I +  P TTR  +   L  E      
Sbjct: 33  LPEDYRAGY-VAIVGRPNVGKSTLMNHMLGQKLSITSRKPQTTRHRIHGILSHEDMQAVF 91

Query: 272 SDTAGI 277
            DT GI
Sbjct: 92  VDTPGI 97


>gi|315656148|ref|ZP_07909039.1| GTP-binding protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315493150|gb|EFU82750.1| GTP-binding protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 352

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 11/86 (12%)

Query: 219 GYKIVILGHSNAGKSSLFNAL---AKKDVAIVTDIPG----TTRDVLTIDLDLEGYLVKI 271
           G   V+LGHS  GKS+L NAL   A +    V ++ G    T+   + + +  +G+L+  
Sbjct: 224 GEVTVLLGHSGVGKSTLVNALVPGANRATGEVNEVTGKGRHTSTSAVALPIGSQGWLI-- 281

Query: 272 SDTAGIRETD-DIVEKEGIKRTFLEV 296
            DT G+R      V+  G+ R F E+
Sbjct: 282 -DTPGVRSFGLAHVDAAGLLRGFTEL 306


>gi|317132744|ref|YP_004092058.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
 gi|315470723|gb|ADU27327.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
          Length = 689

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 10/108 (9%)

Query: 65  LLIVFPSPESFTGE-DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS--------R 115
           L IVF     FTG+  S E  +   I + NG LE +  +P+    N G  +        +
Sbjct: 147 LAIVFNGSPLFTGDAGSGESEIRRWI-IENGWLETIIALPDQLFYNTGILTYVWIVTNRK 205

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163
           +    GKI L++  S  + +      +R+L  E    EL+ +YG++++
Sbjct: 206 KGVRKGKIQLIDGTSFFERMRKPLGEKRKLISEEQKDELTRIYGKFVE 253


>gi|300173713|ref|YP_003772879.1| GTP-binding protein yqeH [Leuconostoc gasicomitatum LMG 18811]
 gi|299888092|emb|CBL92060.1| GTP-binding protein yqeH [Leuconostoc gasicomitatum LMG 18811]
          Length = 382

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+L N + K     +D+   +  PGTT D + I L     L+  
Sbjct: 177 REGRDVYVVGVTNVGKSTLINQIIKSGTGVQDLITTSRFPGTTLDRIEIPLADGRQLI-- 234

Query: 272 SDTAGIRETDDI 283
            DT GI + D I
Sbjct: 235 -DTPGIVKRDQI 245


>gi|270296348|ref|ZP_06202548.1| ferrous iron transporter B [Bacteroides sp. D20]
 gi|270273752|gb|EFA19614.1| ferrous iron transporter B [Bacteroides sp. D20]
          Length = 823

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           ++E+ VQ     E L + + L  D    ++ GK     R    + ++G+ N GK+SLFN 
Sbjct: 77  AKEQAVQP-DYHEGLGENMHLGEDELKQLALGK-----RRTINVALVGNPNCGKTSLFN- 129

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           +A      V +  G T D      D +GY  +I D  G         +E   R  +  E 
Sbjct: 130 IASGSHEHVGNYSGVTVDAKEGYFDFQGYHFRIVDLPGTYSLSAYSPEEIYVRQHIINET 189

Query: 299 ADLIL 303
            D+I+
Sbjct: 190 PDIII 194


>gi|146307980|ref|YP_001188445.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145576181|gb|ABP85713.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 914

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 11/96 (11%)

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL---ANPGEFSRRAFENGKIDLLEA- 128
           ESF   DS+    +GG  +   I +EL +M   R+   + PG+ +R AF+   I LLEA 
Sbjct: 581 ESFAQGDSSTTRRYGGSGLGLAISKELVEMMGGRIEVQSTPGQGTRFAFD---IPLLEAP 637

Query: 129 ---ESLADLISSETEMQRRLSMEGMSGELSSLYGQW 161
              + LA L++  T +   L   G+   LS L G+W
Sbjct: 638 EAPDDLARLLAGRTALLASLDGLGLDA-LSRLLGRW 672


>gi|159899753|ref|YP_001546000.1| GTP-binding protein Era [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892792|gb|ABX05872.1| GTP-binding protein Era [Herpetosiphon aurantiacus ATCC 23779]
          Length = 489

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + +G+ + ++G  N GKS+L NA   + V+IV+  P TTR  +   L+     +   DT 
Sbjct: 195 VHSGF-VALVGKPNVGKSTLLNAYLGQKVSIVSPKPQTTRVPVRGILNGPDAQIIFVDTP 253

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           GI +    +    +      V NAD+I  + +I 
Sbjct: 254 GIHKPRHKLGNFMVDVAKRAVPNADVICFMVDIT 287


>gi|111023736|ref|YP_706708.1| GTP-binding protein [Rhodococcus jostii RHA1]
 gi|110823266|gb|ABG98550.1| GTP-binding protein [Rhodococcus jostii RHA1]
          Length = 484

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I I+G++NAGKSSL NAL    V    A+   +  TTR     D    G    ++DT G 
Sbjct: 262 IAIVGYTNAGKSSLLNALTGSGVLVQNALFATLDPTTRRAALDD----GREYVLTDTVGF 317

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL 303
                    E  + T  EV +ADL+L
Sbjct: 318 VRHLPTQLIEAFRSTLEEVTDADLLL 343


>gi|73669657|ref|YP_305672.1| GTP-binding protein [Methanosarcina barkeri str. Fusaro]
 gi|72396819|gb|AAZ71092.1| GTP-binding protein [Methanosarcina barkeri str. Fusaro]
          Length = 333

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 21/161 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           IVI G+ N GKSS  + +   +  I    P TT+ V       +    ++ DT G+    
Sbjct: 162 IVIAGYPNVGKSSFVSKITGANPEIAP-YPFTTKGVTIGHFMRDSMRYQVMDTPGLLDRP 220

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLK-------EINSKK----EISFPKNIDFIFI 325
             E +DI E++ I  T +   +A ++ ++        EI ++K    EI     +  + +
Sbjct: 221 MSERNDI-ERQAI--TAIHYLDAVVMFMIDPSESCGYEIEAQKHLLVEIRENFKLPLLVV 277

Query: 326 GTKSDLYS-TYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
             K+D       +E +  IS+ TGEG+E+++N++  ++  K
Sbjct: 278 ANKADRSEFKKLDEVEFNISTVTGEGIEDVMNRLMQMIEEK 318


>gi|6324381|ref|NP_014451.1| Nog2p [Saccharomyces cerevisiae S288c]
 gi|1730685|sp|P53742|NOG2_YEAST RecName: Full=Nucleolar GTP-binding protein 2
 gi|1302570|emb|CAA96334.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285814700|tpg|DAA10594.1| TPA: Nog2p [Saccharomyces cerevisiae S288c]
          Length = 486

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    +  +G+ N GKSS+ N L KK V  V  IPG T+    I L    +L+   D  G
Sbjct: 313 RKQISVGFIGYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLMKRIFLI---DCPG 369

Query: 277 I 277
           I
Sbjct: 370 I 370


>gi|315127880|ref|YP_004069883.1| protease GTPase subunit [Pseudoalteromonas sp. SM9913]
 gi|315016394|gb|ADT69732.1| protease GTPase subunit [Pseudoalteromonas sp. SM9913]
          Length = 429

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 29/183 (15%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGY 267
           QG+          + ++G++NAGKS+LFN +   DV     +  T    L  +D+   G 
Sbjct: 187 QGRRARTRNEIPTVSLVGYTNAGKSTLFNRITNSDVYAADQLFATLDPTLRKLDIGDVGS 246

Query: 268 LVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------K 312
           ++ ++DT G IR    D+V     K T  E   ADL L + ++                K
Sbjct: 247 VI-LADTVGFIRHLPHDLV--AAFKATLTETREADLQLHVIDVADPRRKENIEQVQEVLK 303

Query: 313 EISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILS 363
           EI    ++  + +  K D     T   D           +S+ TGEG E L   I  +L+
Sbjct: 304 EIE-ADDVPQLLVYNKIDALDDVTPRIDRDDEGQPIRVWLSAKTGEGCELLSEAISDLLA 362

Query: 364 NKF 366
            K 
Sbjct: 363 KKM 365


>gi|311105366|ref|YP_003978219.1| GTP-binding proten HflX [Achromobacter xylosoxidans A8]
 gi|310760055|gb|ADP15504.1| GTP-binding proten HflX [Achromobacter xylosoxidans A8]
          Length = 368

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG-IRE 279
           + ++G++NAGKS+LFNAL + D +   D    T D  T  + +EG   V +SDT G IR+
Sbjct: 192 VSLVGYTNAGKSTLFNALTRAD-SYAADQLFATLDTTTRRIWIEGAGSVVVSDTVGFIRD 250

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
               +     + T  E  +ADL+L
Sbjct: 251 LPHGL-IAAFRATLEETVHADLLL 273


>gi|307187907|gb|EFN72820.1| GTP-binding protein era-like protein [Camponotus floridanus]
          Length = 344

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 89/213 (41%), Gaps = 56/213 (26%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVA------------------------IVTDIPGTTRD 256
           KI ILG  NAGKS+L N L K+ +                         I  D PG    
Sbjct: 54  KIAILGAPNAGKSTLVNKLIKRSICPTSSKVHTTQTKTDAIYCEDDTQLIFIDTPGVVSM 113

Query: 257 VLTIDLDLEGYL-------VKISDTAGI-RETDDIVEKEGIKRTFLE------VENADLI 302
             +   +L G         +  +D  GI +E ++I  +  I +  LE      +    +I
Sbjct: 114 YTSKRYNLAGSFRNDPQVSLAAADIVGIVQEANNIYTRHKIDKNILELLTEKIINKIPMI 173

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           L+  +++  +       +  IF+ +K  L   +++ +  ++S+ TG+G+++L    ++ L
Sbjct: 174 LIFNKVDKLRRKDVLLELVDIFVKSKESL--KFSDIF--MVSALTGDGIDDL----RTYL 225

Query: 363 SNKFKKLPFSIPSHKRHLYH-------LSQTVR 388
            +  K   +    ++RH+Y        + QTVR
Sbjct: 226 LDSAKPQDW---QYERHIYSNHKCEYIIQQTVR 255


>gi|153955957|ref|YP_001396722.1| ribosome biogenesis GTP-binding protein YsxC [Clostridium kluyveri
           DSM 555]
 gi|189037173|sp|A5N2K5|ENGB_CLOK5 RecName: Full=Probable GTP-binding protein EngB
 gi|146348815|gb|EDK35351.1| EngB [Clostridium kluyveri DSM 555]
          Length = 197

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 13/86 (15%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR--DVLTID-----LDLEGY-LVKIS 272
           I  +G SN GKSSL NAL  +K +  V+  PG TR  +   I+     +DL GY   KIS
Sbjct: 26  IAFVGRSNVGKSSLINALTNRKKLVKVSGTPGKTRLINFFLINNEFYFVDLPGYGYAKIS 85

Query: 273 DT----AGIRETDDIVEKEGIKRTFL 294
            T     G    D +  +E +KR  L
Sbjct: 86  KTEKKSWGKVVEDYLRGREELKRVIL 111


>gi|15835314|ref|NP_297073.1| GTPase ObgE [Chlamydia muridarum Nigg]
 gi|270285486|ref|ZP_06194880.1| GTPase ObgE [Chlamydia muridarum Nigg]
 gi|270289498|ref|ZP_06195800.1| GTPase ObgE [Chlamydia muridarum Weiss]
 gi|301336883|ref|ZP_07225085.1| GTPase ObgE [Chlamydia muridarum MopnTet14]
 gi|81858502|sp|Q9PJX7|OBG_CHLMU RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg
 gi|8163297|gb|AAF73594.1| GTP-binding protein, GTP1/Obg family [Chlamydia muridarum Nigg]
          Length = 335

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 48/206 (23%)

Query: 201 NDISSHISQGKLGEI------IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           N   +  + GK GEI      ++    I ++G  NAGKS+LFN LA+ +V  V   P TT
Sbjct: 134 NRAPTKATPGKPGEIRLVELELKLIADIGLVGFPNAGKSTLFNTLARTEVK-VGAYPFTT 192

Query: 255 RDVLTIDLDLEGYLVK----ISDTAGIRETDD---------------------IVEKEGI 289
                  +  EGYL +    ++D  GI E                        +V+  GI
Sbjct: 193 LHPSLGLVHQEGYLYQKPWIMADIPGIIEGASQNRGLGLDFLRHIERTRLLLFVVDISGI 252

Query: 290 KRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           +R+  E    DL +L+ E+ + KE        I+  K ID +    + +  +   +++  
Sbjct: 253 ERSSPE---KDLQILIGELLAYKEDLKNKSMVIALNK-IDQLLPDEREERLALLKQQFPD 308

Query: 342 ----LISSFTGEGLEELINKIKSILS 363
               L+S  TGEG++ L +  KS LS
Sbjct: 309 QEFILLSGLTGEGVDVLHDLFKSKLS 334


>gi|110634508|ref|YP_674716.1| translation-associated GTPase [Mesorhizobium sp. BNC1]
 gi|110285492|gb|ABG63551.1| GTP-binding protein YchF [Chelativorans sp. BNC1]
          Length = 367

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           G+K  I+G  N GKS+LFNAL K   A   + P  T +  T ++ + +  L KI++ A  
Sbjct: 2   GFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRLKKIAEIAAS 61

Query: 278 RET 280
           +ET
Sbjct: 62  KET 64


>gi|261368640|ref|ZP_05981523.1| GTP-binding protein HflX [Subdoligranulum variabile DSM 15176]
 gi|282569371|gb|EFB74906.1| GTP-binding protein HflX [Subdoligranulum variabile DSM 15176]
          Length = 427

 Score = 36.6 bits (83), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI--R 278
           + ++G++N GKSSL NAL  + +    D+   T D     L L  G  V + DT G   R
Sbjct: 217 VALVGYTNVGKSSLLNALCGEQI-FEADMLFATLDPTARKLTLPSGLQVILVDTVGFVSR 275

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK---------NIDFIFIG 326
               +V  E  K T  E   AD+IL + + +   + ++++            +I  + + 
Sbjct: 276 LPHHLV--EAFKSTLEEAAFADVILKVADASDPQAAEQLAVTDEVLGTLDCGDIPQLVVY 333

Query: 327 TKSDLYS-TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            K D  + T  +    L S+ TG GL EL+ ++   L+++ + +   +P  K
Sbjct: 334 NKCDAANLTAFDPAMLLTSAKTGRGLPELLARLDEELAHRVRTIEVVLPYDK 385


>gi|109896346|ref|YP_659601.1| GTP-binding protein, HSR1-related [Pseudoalteromonas atlantica T6c]
 gi|119369232|sp|Q160A3|ENGB_PSEA6 RecName: Full=Probable GTP-binding protein EngB
 gi|109698627|gb|ABG38547.1| cell division checkpoint GTPase YihA [Pseudoalteromonas atlantica
           T6c]
          Length = 206

 Score = 36.6 bits (83), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            G ++   G SNAGKSS  N L + K +A  +  PG T+ +   DLD +  L+ +
Sbjct: 23  QGIEVAFAGRSNAGKSSALNRLTRQKSLARTSKTPGRTQLINVFDLDEDRRLIDL 77


>gi|26251065|ref|NP_757105.1| putative GTPase HflX [Escherichia coli CFT073]
 gi|91213722|ref|YP_543708.1| putative GTPase HflX [Escherichia coli UTI89]
 gi|110644530|ref|YP_672260.1| putative GTPase HflX [Escherichia coli 536]
 gi|170766941|ref|ZP_02901394.1| GTP-binding protein HflX [Escherichia albertii TW07627]
 gi|191174526|ref|ZP_03036024.1| GTP-binding protein HflX [Escherichia coli F11]
 gi|215489517|ref|YP_002331948.1| putative GTPase HflX [Escherichia coli O127:H6 str. E2348/69]
 gi|218561332|ref|YP_002394245.1| GTPase HflX [Escherichia coli S88]
 gi|218692507|ref|YP_002400719.1| putative GTPase HflX [Escherichia coli ED1a]
 gi|227886784|ref|ZP_04004589.1| GTPase HflX [Escherichia coli 83972]
 gi|237703840|ref|ZP_04534321.1| GTP-binding protein hflX [Escherichia sp. 3_2_53FAA]
 gi|300987262|ref|ZP_07178091.1| GTP-binding protein HflX [Escherichia coli MS 45-1]
 gi|300988650|ref|ZP_07178790.1| GTP-binding protein HflX [Escherichia coli MS 200-1]
 gi|301045955|ref|ZP_07193139.1| GTP-binding protein HflX [Escherichia coli MS 185-1]
 gi|306815612|ref|ZP_07449761.1| putative GTPase HflX [Escherichia coli NC101]
 gi|331650298|ref|ZP_08351370.1| GTP-binding protein HflX [Escherichia coli M605]
 gi|331660748|ref|ZP_08361680.1| GTP-binding protein HflX [Escherichia coli TA206]
 gi|26111497|gb|AAN83679.1|AE016771_190 GTP-binding protein hflX [Escherichia coli CFT073]
 gi|91075296|gb|ABE10177.1| GTP-binding protein HflX [Escherichia coli UTI89]
 gi|110346122|gb|ABG72359.1| GTP-binding protein HflX [Escherichia coli 536]
 gi|170124379|gb|EDS93310.1| GTP-binding protein HflX [Escherichia albertii TW07627]
 gi|190905206|gb|EDV64847.1| GTP-binding protein HflX [Escherichia coli F11]
 gi|215267589|emb|CAS12044.1| predicted GTPase [Escherichia coli O127:H6 str. E2348/69]
 gi|218368101|emb|CAR05908.1| putative GTPase [Escherichia coli S88]
 gi|218430071|emb|CAR10916.1| putative GTPase [Escherichia coli ED1a]
 gi|222035943|emb|CAP78688.1| GTP-binding protein hflX [Escherichia coli LF82]
 gi|226901752|gb|EEH88011.1| GTP-binding protein hflX [Escherichia sp. 3_2_53FAA]
 gi|227836357|gb|EEJ46823.1| GTPase HflX [Escherichia coli 83972]
 gi|281181269|dbj|BAI57599.1| hypothetical phage protein [Escherichia coli SE15]
 gi|294491581|gb|ADE90337.1| GTP-binding protein HflX [Escherichia coli IHE3034]
 gi|300302038|gb|EFJ58423.1| GTP-binding protein HflX [Escherichia coli MS 185-1]
 gi|300305883|gb|EFJ60403.1| GTP-binding protein HflX [Escherichia coli MS 200-1]
 gi|300407739|gb|EFJ91277.1| GTP-binding protein HflX [Escherichia coli MS 45-1]
 gi|305851274|gb|EFM51729.1| putative GTPase HflX [Escherichia coli NC101]
 gi|307556340|gb|ADN49115.1| GTP-binding protein HflX [Escherichia coli ABU 83972]
 gi|307629244|gb|ADN73548.1| putative GTPase HflX [Escherichia coli UM146]
 gi|312948822|gb|ADR29649.1| putative GTPase HflX [Escherichia coli O83:H1 str. NRG 857C]
 gi|315288454|gb|EFU47852.1| GTP-binding protein HflX [Escherichia coli MS 110-3]
 gi|315293545|gb|EFU52897.1| GTP-binding protein HflX [Escherichia coli MS 153-1]
 gi|315299054|gb|EFU58308.1| GTP-binding protein HflX [Escherichia coli MS 16-3]
 gi|323189948|gb|EFZ75226.1| GTP-binding proten HflX [Escherichia coli RN587/1]
 gi|323950758|gb|EGB46636.1| GTP-binding protein HflX [Escherichia coli H252]
 gi|323955460|gb|EGB51224.1| GTP-binding protein HflX [Escherichia coli H263]
 gi|324013815|gb|EGB83034.1| GTP-binding protein HflX [Escherichia coli MS 60-1]
 gi|330908515|gb|EGH37034.1| GTP-binding protein HflX [Escherichia coli AA86]
 gi|331040692|gb|EGI12850.1| GTP-binding protein HflX [Escherichia coli M605]
 gi|331051790|gb|EGI23829.1| GTP-binding protein HflX [Escherichia coli TA206]
          Length = 426

 Score = 36.6 bits (83), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 27/202 (13%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +     QG+   I  +   + ++G++NAGKS+LFN + +  V     +  T    L  ID
Sbjct: 181 VEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRID 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILL------------LKE 307
           +   G  V ++DT G IR    D+V     K T  E   A L+L             ++ 
Sbjct: 241 VADVGETV-LADTVGFIRHLPHDLV--AAFKATLQETRQATLLLHVIDAADVRVQENIEA 297

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKI 358
           +N+  E      I  + +  K D+   +    D           +S+ TG G+ +L   +
Sbjct: 298 VNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPQLFQAL 357

Query: 359 KSILSNKFKKLPFSIPSHKRHL 380
              LS +  +    +P  +  L
Sbjct: 358 TERLSGEVAQHTLRLPPQEGRL 379


>gi|193213078|ref|YP_001999031.1| ferrous iron transport protein B [Chlorobaculum parvum NCIB 8327]
 gi|193086555|gb|ACF11831.1| ferrous iron transport protein B [Chlorobaculum parvum NCIB 8327]
          Length = 784

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G+ N GK++LFNAL   +   V + PG T D  T     +G   ++ D  GI    
Sbjct: 23  VAVVGNPNCGKTTLFNALTGLN-QRVGNWPGVTVDKKTGRFRHDGEEYELVDLPGIYSLS 81

Query: 282 DIVEKEGIKRTFLEVENADLIL 303
            + + E + R+++    A L++
Sbjct: 82  SLSQDEEVARSYILSGEAGLVV 103


>gi|222099117|ref|YP_002533685.1| GTP-binding protein HflX [Thermotoga neapolitana DSM 4359]
 gi|221571507|gb|ACM22319.1| GTP-binding protein HflX [Thermotoga neapolitana DSM 4359]
          Length = 420

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG-IRE 279
           + I+G++NAGKS+L  +L + DV I   +  T   V T  L L+ G ++ +SDT G IR+
Sbjct: 203 VSIVGYTNAGKSTLLKSLTESDVYIADKLFATLEPV-TRRLKLKSGKIILVSDTVGFIRK 261

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305
               +     K T  EV+ +D+++ L
Sbjct: 262 LPHTI-VSAFKATLEEVKYSDVLIHL 286


>gi|150402839|ref|YP_001330133.1| small GTP-binding protein [Methanococcus maripaludis C7]
 gi|150033869|gb|ABR65982.1| small GTP-binding protein [Methanococcus maripaludis C7]
          Length = 184

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 28/36 (77%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +KI ++G  N+GKSSL N++  K+++ V+++ GTT+
Sbjct: 6   FKIALVGPENSGKSSLVNSIFGKNISEVSEVGGTTK 41


>gi|118443037|ref|YP_878280.1| ribosomal biogenesis GTPase [Clostridium novyi NT]
 gi|118133493|gb|ABK60537.1| GTP-binding protein, putative [Clostridium novyi NT]
          Length = 280

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 12/118 (10%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
           QWI+KL++  S     ++    + + N   K  +N++L  K+D     S+G +    R  
Sbjct: 70  QWIEKLSN-DSVKVLSVNCVTGKGLNNI--KPTINELLKEKHD--RLKSKGMVNITTR-- 122

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              +++G  N GKSS  N +AK + A V D PG T++   I   +    +++ DT G+
Sbjct: 123 --AMVVGIPNVGKSSFINKMAKNNTAKVGDRPGVTKNKQWIKTKMG---IELLDTPGV 175


>gi|116073855|ref|ZP_01471117.1| putative GTP-binding protein, transport associated [Synechococcus
           sp. RS9916]
 gi|116069160|gb|EAU74912.1| putative GTP-binding protein, transport associated [Synechococcus
           sp. RS9916]
          Length = 575

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 10/97 (10%)

Query: 221 KIVILGHSNAGKSSLFNALA-----KKDVA---IVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           ++ ++G++NAGKSSL NAL      KK +A   +   +  TTR +           + I+
Sbjct: 384 RLALVGYTNAGKSSLLNALCVKGERKKVLAENKLFATLDPTTRRLTLPQPAAAARELLIT 443

Query: 273 DTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           DT G IR+  D +  E  + T  E  +AD++LL+ ++
Sbjct: 444 DTVGFIRDLPDAL-VEAFRATLEEALDADVLLLVVDL 479


>gi|308806946|ref|XP_003080784.1| putative GTP-binding protein; 106556-109264 (ISS) [Ostreococcus
           tauri]
 gi|116059245|emb|CAL54952.1| putative GTP-binding protein; 106556-109264 (ISS) [Ostreococcus
           tauri]
          Length = 703

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  +G+ N GKSS+ NAL +K V +   IPG T+    ++L    +L+   D  G+
Sbjct: 317 VGFVGYPNVGKSSVINALRQKRVCVAAPIPGETKVWQYVNLTKRIFLI---DCPGV 369


>gi|54303559|ref|YP_133552.1| ferrous ion transport protein B [Photobacterium profundum SS9]
 gi|46916990|emb|CAG23752.1| hypothetical ferrous ion transport protein B [Photobacterium
           profundum SS9]
          Length = 667

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 23/127 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL----------VK 270
           KI + G+ N+GK++LFNAL  K  A V +  G T D        EG +          + 
Sbjct: 2   KIALAGNPNSGKTTLFNALTGK-AAHVGNWAGVTVD------KKEGLVKKAFNKTDAEIT 54

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPK-----NIDFIF 324
           + D  G         +E I R F++ E  D+IL ++   N  + + F       NI  + 
Sbjct: 55  VVDLPGAYSMSPFSSEEAITRDFVKNEKPDVILNIVDATNLSRSLFFTTQLLELNIPVVV 114

Query: 325 IGTKSDL 331
              KSDL
Sbjct: 115 ALNKSDL 121


>gi|113461247|ref|YP_719316.1| GTP-binding protein HflX [Haemophilus somnus 129PT]
 gi|112823290|gb|ABI25379.1| GTP-binding protein HflX [Haemophilus somnus 129PT]
          Length = 458

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 30/194 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAG-IRE 279
           I ++G++NAGKS+LFN L + +V +   +  T    L  + +   G  V ++DT G IRE
Sbjct: 225 ISLVGYTNAGKSTLFNVLTQANVYVADQLFATLDPTLKRLPIQDVGNCV-LADTVGFIRE 283

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST---Y 335
              D+V     K T  E   A L+L + ++   +++     ++ +    K++  +T   Y
Sbjct: 284 LPHDLV--SAFKSTLQETTEASLLLHVIDVADSRKLENMLTVNEVLSEIKANQVTTLLVY 341

Query: 336 TE-----------EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            +           E+D         +S+   +GL+ L+  I+  LS++   L  ++ +  
Sbjct: 342 NKIDQVENIQPHIEFDEENQPIAVYLSAQLNQGLDLLVEAIRQKLSHEILHLEINLAAQY 401

Query: 378 ---RHLYHLSQTVR 388
              RH ++    VR
Sbjct: 402 GKIRHCFYQLNCVR 415


>gi|259503609|ref|ZP_05746511.1| GTP-binding protein [Lactobacillus antri DSM 16041]
 gi|259168433|gb|EEW52928.1| GTP-binding protein [Lactobacillus antri DSM 16041]
          Length = 372

 Score = 36.6 bits (83), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R+   + ++G +N GKS+L N + K     +D+   +  PGTT D + I LD +G+ 
Sbjct: 162 EKYRHDRDVYVVGVTNVGKSTLINQIIKQRTGVQDLITTSRFPGTTLDEIEIPLD-DGH- 219

Query: 269 VKISDTAGI 277
            ++ DT GI
Sbjct: 220 -RLVDTPGI 227


>gi|225568846|ref|ZP_03777871.1| hypothetical protein CLOHYLEM_04925 [Clostridium hylemonae DSM
           15053]
 gi|225162345|gb|EEG74964.1| hypothetical protein CLOHYLEM_04925 [Clostridium hylemonae DSM
           15053]
          Length = 200

 Score = 36.6 bits (83), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +I   G SN GKSSL NAL  +K  A ++  PG T+ +   +++ E YLV +
Sbjct: 25  EIAFAGKSNVGKSSLINALMNRKSYARISATPGKTQTINFYNINNEMYLVDL 76


>gi|170717290|ref|YP_001784405.1| GTP-binding protein HSR1-related [Haemophilus somnus 2336]
 gi|168825419|gb|ACA30790.1| GTP-binding protein HSR1-related [Haemophilus somnus 2336]
          Length = 458

 Score = 36.6 bits (83), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 30/194 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAG-IRE 279
           I ++G++NAGKS+LFN L + +V +   +  T    L  + +   G  V ++DT G IRE
Sbjct: 225 ISLVGYTNAGKSTLFNVLTQANVYVADQLFATLDPTLKRLPIQDVGNCV-LADTVGFIRE 283

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST---Y 335
              D+V     K T  E   A L+L + ++   +++     ++ +    K++  +T   Y
Sbjct: 284 LPHDLV--SAFKSTLQETTEASLLLHVIDVADSRKLENMLTVNEVLSEIKANQVTTLLVY 341

Query: 336 TE-----------EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            +           E+D         +S+   +GL+ L+  I+  LS++   L  ++ +  
Sbjct: 342 NKIDQVENIQPHIEFDEENQPIAVYLSAQLNQGLDLLVEAIRQKLSHEILHLEINLAAQY 401

Query: 378 ---RHLYHLSQTVR 388
              RH ++    VR
Sbjct: 402 GKIRHCFYQLNCVR 415


>gi|298372861|ref|ZP_06982851.1| ferrous iron transport protein B [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275765|gb|EFI17316.1| ferrous iron transport protein B [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 877

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N+GKS+LFNA     V  V +  G T DV       +GY     D  G
Sbjct: 106 RREINVALVGNPNSGKSTLFNAFTGMHVK-VGNYSGVTVDVKKGSCSYKGYRFNFVDLPG 164

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
                    +E + R  +  E  D++L
Sbjct: 165 TYSISAFSPEERLVRRHIVDEKPDIVL 191


>gi|226366173|ref|YP_002783956.1| GTP-binding protein HflX [Rhodococcus opacus B4]
 gi|226244663|dbj|BAH55011.1| putative GTP-binding protein HflX [Rhodococcus opacus B4]
          Length = 484

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I I+G++NAGKSSL NAL    V    A+   +  TTR     D    G    ++DT G 
Sbjct: 262 IAIVGYTNAGKSSLLNALTGSGVLVQNALFATLDPTTRRAALDD----GREYVLTDTVGF 317

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL 303
                    E  + T  EV +ADL+L
Sbjct: 318 VRHLPTQLIEAFRSTLEEVTDADLLL 343


>gi|158295666|ref|XP_316343.4| AGAP006279-PA [Anopheles gambiae str. PEST]
 gi|157016146|gb|EAA10895.4| AGAP006279-PA [Anopheles gambiae str. PEST]
          Length = 190

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 23/148 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + IV++G    GK+ L +A   K      +     ++ + + LD + Y +++ DTAG  E
Sbjct: 6   FNIVVVGDGAVGKTCLLHAYTDKSFKNFYEPTIYDKESIEMILDGQKYTIQLHDTAGQEE 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK-----------KEISFPKNIDFIFIGTK 328
            D I  ++  KR       AD  LL   I+++            EI     +  + +GTK
Sbjct: 66  YDKI-RQQFYKR-------ADCFLLCYSIDNRVSFENASTKWIPEIKTNPPVPIVLLGTK 117

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELIN 356
            D       E    +S+  G+ L+  IN
Sbjct: 118 LDNRKGKNNE----VSTGEGDRLKRAIN 141


>gi|27497785|gb|AAO13002.1| putative GTP-binding protein [Pseudomonas fluorescens]
          Length = 81

 Score = 36.6 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           G+++   G SNAGKSS  N L    +A  +  PG T+ +    LD E  LV
Sbjct: 31  GFEVAFAGRSNAGKSSALNTLTHASLARTSKTPGRTQLLNFFKLDDERRLV 81


>gi|34496665|ref|NP_900880.1| hypothetical protein CV_1210 [Chromobacterium violaceum ATCC 12472]
 gi|34102520|gb|AAQ58885.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 293

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLV 269
           ++ E++     + ++G S AGKSSL NAL  +DVA V D+   T       L  + G  +
Sbjct: 36  RIEELVNYEAAVGLMGKSGAGKSSLCNALFGQDVAEVDDVAPCTVGASEYTLAYQNGKGI 95

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEV-ENADLILLL 305
            + D  G+ E  D  ++    + + E+    DL+L L
Sbjct: 96  SLIDLPGVGERQD--KEAAYAKQYQEMLPELDLVLWL 130


>gi|82546586|ref|YP_410533.1| GTPase HflX [Shigella boydii Sb227]
 gi|187731219|ref|YP_001882864.1| putative GTPase HflX [Shigella boydii CDC 3083-94]
 gi|81247997|gb|ABB68705.1| GTP-binding subunit of protease [Shigella boydii Sb227]
 gi|187428211|gb|ACD07485.1| GTP-binding protein HflX [Shigella boydii CDC 3083-94]
 gi|320173673|gb|EFW48863.1| GTP-binding protein HflX [Shigella dysenteriae CDC 74-1112]
 gi|320187051|gb|EFW61762.1| GTP-binding protein HflX [Shigella flexneri CDC 796-83]
 gi|332087034|gb|EGI92168.1| GTP-binding proten HflX [Shigella boydii 3594-74]
          Length = 426

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 27/202 (13%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +     QG+   I  +   + ++G++NAGKS+LFN + +  V     +  T    L  ID
Sbjct: 181 VEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRID 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILL------------LKE 307
           +   G  V ++DT G IR    D+V     K T  E   A L+L             ++ 
Sbjct: 241 VADVGETV-LADTVGFIRHLPHDLV--AAFKATLQETRQATLLLHVIDAADVRVQENIEA 297

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKI 358
           +N+  E      I  + +  K D+   +    D           +S+ TG G+ +L   +
Sbjct: 298 VNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIPQLFQAL 357

Query: 359 KSILSNKFKKLPFSIPSHKRHL 380
              LS +  +    +P  +  L
Sbjct: 358 TERLSGEVAQHTLRLPPQEGRL 379


>gi|331701565|ref|YP_004398524.1| ribosome biogenesis GTPase YqeH [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128908|gb|AEB73461.1| ribosome biogenesis GTPase YqeH [Lactobacillus buchneri NRRL
           B-30929]
          Length = 378

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 8/77 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI-----VTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+L N++ ++   I      +  PGTT D + I L+ +G+ 
Sbjct: 167 EKYRQGKDVYVVGVTNVGKSTLINSIVRQSTGIKELITTSRFPGTTLDRIDIPLN-DGH- 224

Query: 269 VKISDTAGIRETDDIVE 285
             + DT GI + + +  
Sbjct: 225 -NLVDTPGIIQPEQMAH 240


>gi|289193010|ref|YP_003458951.1| ferrous iron transport protein B [Methanocaldococcus sp. FS406-22]
 gi|288939460|gb|ADC70215.1| ferrous iron transport protein B [Methanocaldococcus sp. FS406-22]
          Length = 668

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS++FNAL  ++V I  +  G T +    + +  G   K+ D  G+  
Sbjct: 4   YEIALIGNPNVGKSTIFNALTGENVYI-GNWAGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E I R ++  E  DL++
Sbjct: 63  LTANSIDEIIARDYIINEKPDLVV 86


>gi|261209769|ref|ZP_05924075.1| GTP-binding protein HflX [Vibrio sp. RC341]
 gi|260841185|gb|EEX67695.1| GTP-binding protein HflX [Vibrio sp. RC341]
          Length = 429

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +E +  IL     ++    QG+          I ++G++NAGKS+LFN + +  V     
Sbjct: 168 RERIKAILRRLEKVAKQREQGRRARSRAEIPTISLVGYTNAGKSTLFNRITEAGVYAADQ 227

Query: 250 IPGTTRDVLT-IDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLK 306
           +  T    L  IDL   G  V ++DT G IR    D+V     K T  E + AD++L + 
Sbjct: 228 LFATLDPTLRKIDLADVGPAV-LADTVGFIRHLPHDLV--AAFKATLQETQEADILLHVV 284

Query: 307 EINSKKEISFPKNIDFI 323
           + + ++   F +NI  +
Sbjct: 285 DASDER---FRENIQAV 298


>gi|260554075|ref|ZP_05826338.1| GTPase [Acinetobacter sp. RUH2624]
 gi|260404814|gb|EEW98321.1| GTPase [Acinetobacter sp. RUH2624]
          Length = 444

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279
           + ++G++NAGKS+LFN LAK DV     +  T    L  ++ D  G +V ++DT G +R 
Sbjct: 202 VSLVGYTNAGKSTLFNILAKSDVYAADQLFATLDPTLRRLEWDGIGTVV-LADTVGFVRN 260

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL 303
              D+V  E  K T  E   A L+L
Sbjct: 261 LQHDLV--ESFKATLEETLEATLLL 283


>gi|153855189|ref|ZP_01996373.1| hypothetical protein DORLON_02387 [Dorea longicatena DSM 13814]
 gi|149752358|gb|EDM62289.1| hypothetical protein DORLON_02387 [Dorea longicatena DSM 13814]
          Length = 422

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 30/166 (18%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG-IRETD 281
           I+G++NAGKS+L N L    +    D    T D  T DL L  G  + ++DT G IR+  
Sbjct: 203 IVGYTNAGKSTLLNTLTGAGI-FAEDKLFATLDPTTRDLKLPSGQEILMTDTVGFIRKLP 261

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---------------------INSKKEISFPKNI 320
             +  E  + T  E   AD+IL + +                     +  K  I+    I
Sbjct: 262 HHL-IEAFRSTLEEARYADIILHVVDASNPQMDEQMHTVYETLQNLGVKDKPVITVFNKI 320

Query: 321 DFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           D +  I    DL++ Y  +    IS+ TGEG+ E +  ++++L  +
Sbjct: 321 DRMEDIWVPRDLHADYYVK----ISARTGEGITEFLQSVEAVLREQ 362


>gi|323485837|ref|ZP_08091172.1| hypothetical protein HMPREF9474_02923 [Clostridium symbiosum
           WAL-14163]
 gi|323400825|gb|EGA93188.1| hypothetical protein HMPREF9474_02923 [Clostridium symbiosum
           WAL-14163]
          Length = 665

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N GK++LFNA     +  V + PG T + +  +   +G  +K+ D  GI       
Sbjct: 13  VGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERVEGETSYKGRPIKVIDLPGIYSLTSYT 71

Query: 285 EKEGIKRTFLEVENADLIL 303
            +E + R  +E    D+I+
Sbjct: 72  IEERVTRKCIEDNEVDVIV 90


>gi|320534204|ref|ZP_08034727.1| GTP-binding protein Era [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133581|gb|EFW26006.1| GTP-binding protein Era [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 392

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           E  R G+   I+G  NAGKS+L NAL    +AI +  P TTR
Sbjct: 89  EDFRAGFA-CIVGRPNAGKSTLTNALVGAKIAITSGRPQTTR 129


>gi|315617586|gb|EFU98192.1| GTP-binding proten HflX [Escherichia coli 3431]
          Length = 426

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 27/202 (13%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           +     QG+   I  +   + ++G++NAGKS+LFN + +  V     +  T    L  ID
Sbjct: 181 VEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRID 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILL------------LKE 307
           +   G  V ++DT G IR    D+V     K T  E   A L+L             ++ 
Sbjct: 241 VADVGETV-LADTVGFIRHLPHDLV--AAFKATLQETRQATLLLHVIDAADVRVQENIEA 297

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKI 358
           +N+  E      I  + +  K D+   +    D           +S+ TG G+ +L   +
Sbjct: 298 VNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPQLFQAL 357

Query: 359 KSILSNKFKKLPFSIPSHKRHL 380
              LS +  +    +P  +  L
Sbjct: 358 TERLSGEVAQHTLRLPPQEGRL 379


>gi|313900005|ref|ZP_07833505.1| GTP-binding protein HflX [Clostridium sp. HGF2]
 gi|312955057|gb|EFR36725.1| GTP-binding protein HflX [Clostridium sp. HGF2]
          Length = 417

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 29/188 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--------EGYLVKISD 273
           + ++G++NAGKS++ N L +       D     +D+L   LD         +G    +SD
Sbjct: 191 VSLVGYTNAGKSTIMNMLLEHSSPYEEDKKVLEKDMLFATLDTSIRHIDLPDGKSFLLSD 250

Query: 274 TAGIRET--DDIVEKEGIKRTFLEVENADLILLLKEINSKK-----EISF-------PKN 319
           T G       D+V  E    T  EV+ A L++ + +++S++     EI+          +
Sbjct: 251 TVGFVSNLPHDLV--EAFHSTLEEVQYASLLVQVVDVSSEEYARQMEITQETLQQIKAAD 308

Query: 320 IDFIFIGTKSDLYSTY----TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           I  I +  K D  S Y       +D  +S+    GL+EL++ I S L    K +   IP 
Sbjct: 309 IPMITVYNKCD-QSGYQYPQVHAHDLYMSAKEKAGLQELLDLIHSHLYPDEKHVELHIPY 367

Query: 376 HKRHLYHL 383
            +  +Y L
Sbjct: 368 QQTGIYSL 375


>gi|297847684|ref|XP_002891723.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337565|gb|EFH67982.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 576

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI----RET 280
           +G+ N GKSS+ N L  K+V  V  IPG T+    I L    +L+   D  G+    R+T
Sbjct: 315 VGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLI---DCPGVVYQSRDT 371

Query: 281 D-DIVEKEGIKRTFLE 295
           + DIV K  ++ T LE
Sbjct: 372 ETDIVLKGVVRVTNLE 387


>gi|259907678|ref|YP_002648034.1| GTP-binding protein Era [Erwinia pyrifoliae Ep1/96]
 gi|224963300|emb|CAX54785.1| GTP-binding protein [Erwinia pyrifoliae Ep1/96]
 gi|283477529|emb|CAY73445.1| GTP-binding protein Era [Erwinia pyrifoliae DSM 12163]
          Length = 301

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 37/193 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  + + +  EG Y     DT G+   
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRI-MGIHTEGQYQAIYVDTPGLH-- 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             + EK  I R             L    +   I   + + F+  GT+      +T + +
Sbjct: 68  --MEEKRAINR-------------LMNRAASSSIGDVEMVIFVVEGTR------WTADDE 106

Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
            +++      +  L  INK+ +I+ +K   LP        HL  L Q + ++++  ++ E
Sbjct: 107 MVLNKLKDGKVPVLLAINKVDNII-DKSILLP--------HLQFLGQQMNFMDVVPISAE 157

Query: 398 KDCGLDIIAENLR 410
           K   +D IA  +R
Sbjct: 158 KGSNVDTIASIVR 170


>gi|194017759|ref|ZP_03056369.1| ribosome biogenesis GTPase YqeH [Bacillus pumilus ATCC 7061]
 gi|194010659|gb|EDW20231.1| ribosome biogenesis GTPase YqeH [Bacillus pumilus ATCC 7061]
          Length = 366

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           R G  + ++G +N GKS+  N +      K++V   +  PGTT D + I LD    L   
Sbjct: 157 REGRNVYVVGCTNVGKSTFINRIIKEVSGKENVITTSQYPGTTLDAIEIPLDDGSALF-- 214

Query: 272 SDTAGI 277
            DT GI
Sbjct: 215 -DTPGI 219


>gi|168188038|ref|ZP_02622673.1| GTP-binding protein [Clostridium botulinum C str. Eklund]
 gi|169294120|gb|EDS76253.1| GTP-binding protein [Clostridium botulinum C str. Eklund]
          Length = 280

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 12/118 (10%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
           +WIDKL++  S     ++    + + N   K  +N++L  K+D      + K   ++   
Sbjct: 70  KWIDKLSN-DSVKVLSVNCVTGKGLNNI--KPTINELLKEKHD------RLKAKGLVNIT 120

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            + +++G  N GKSS  N +AK + A V D PG T++   I   +    +++ DT G+
Sbjct: 121 TRAMVVGIPNVGKSSFINKMAKNNTAKVGDRPGVTKNKQWIKTKMG---IELLDTPGV 175


>gi|145219508|ref|YP_001130217.1| GTP-binding protein, HSR1-related [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205672|gb|ABP36715.1| GTP-binding protein HflX [Chlorobium phaeovibrioides DSM 265]
          Length = 426

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG-IR 278
           ++ ++G++NAGKS+L N L  +  A   +    T D  T  L+L+   LV +SDT G IR
Sbjct: 203 RVALVGYTNAGKSTLMNMLCPQAEAFAENRLFATLDTKTRRLELKINKLVLLSDTVGFIR 262

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +    +  E  + T  EV  AD +L
Sbjct: 263 KLPHTL-VESFRSTLDEVLQADFLL 286


>gi|15842263|ref|NP_337300.1| GTP-binding protein [Mycobacterium tuberculosis CDC1551]
 gi|13882555|gb|AAK47114.1| GTP-binding protein [Mycobacterium tuberculosis CDC1551]
          Length = 556

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           I I+G++NAGKSSL NAL    V    A+   +  TTR     D    G  V ++DT G 
Sbjct: 273 IAIVGYTNAGKSSLLNALTGAGVLVQDALFATLEPTTRRAEFGD----GRPVVLTDTVGF 328

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL 303
                    E  + T  EV +ADL++
Sbjct: 329 VRHLPTQLVEAFRSTLEEVVHADLLV 354


>gi|33863893|ref|NP_895453.1| putative GTP-binding protein, transport associated [Prochlorococcus
           marinus str. MIT 9313]
 gi|33635476|emb|CAE21801.1| putative GTP-binding protein, transport associated [Prochlorococcus
           marinus str. MIT 9313]
          Length = 558

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDV--------AIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           ++ ++G++NAGKSSL NAL  ++          +   +  TTR +L      +   + I+
Sbjct: 376 RVALVGYTNAGKSSLLNALCSRNEHNKVLAENKLFATLDPTTRRLLIPQTGGKPLELLIT 435

Query: 273 DTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           DT G IRE    +  E  + T  E   ADL+L++ +++
Sbjct: 436 DTVGFIRELPAPL-VEAFRATLEETLEADLLLVVVDLS 472


>gi|327401864|ref|YP_004342703.1| Nucleolar GTP-binding-1 domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327317372|gb|AEA47988.1| Nucleolar GTP-binding-1 domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 326

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 23/159 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +V+ G+ N GKSS    ++     I T  P TT+++     D++G  V++ DT G+   D
Sbjct: 157 VVVAGYPNVGKSSFVARISTVQPEIAT-YPFTTKEIYVGIADIDGR-VQVVDTPGL--LD 212

Query: 282 DIVEKEGI--KRTFLEVEN-ADLILLLKEINS------KKEISFPKNID-----FIFIGT 327
             + K     +R  L +++ AD IL + +         + ++S  + +       I + +
Sbjct: 213 RPIHKRNPIERRAILCLKHLADCILFIIDPTETCGYRIESQLSLLEEVKTLEKPVIAVYS 272

Query: 328 KSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNK 365
           K+D++    +  D    SS TGEG+EE++  I+ +L ++
Sbjct: 273 KADMH----DRRDLPAFSSVTGEGIEEVVELIREVLKSR 307


>gi|311265537|ref|XP_003130717.1| PREDICTED: ras and EF-hand domain-containing protein-like [Sus
           scrofa]
          Length = 619

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 33/154 (21%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-------LDLEGYLV 269
           +  +KIV+ G +  GKSS    L K       +  G T   L +D       +D E  ++
Sbjct: 418 QKAFKIVLAGDAAVGKSSFLMRLCK------NEFRGNTSATLGVDFQMKTLIVDGEQTVL 471

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFP 317
           ++ DTAG +E    + K   +R       AD +LLL ++  +K            E +  
Sbjct: 472 QLWDTAG-QERFRSIAKSYFRR-------ADGVLLLYDVTCEKSFLNVREWVDMIEDAAH 523

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           ++I  + +G K+DL      E    +  + GE L
Sbjct: 524 ESIPIMLVGNKADLRDAAEAEGQKCVPGYCGEKL 557


>gi|262401560|ref|ZP_06078127.1| GTP-binding protein HflX [Vibrio sp. RC586]
 gi|262352275|gb|EEZ01404.1| GTP-binding protein HflX [Vibrio sp. RC586]
          Length = 429

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +E +  IL     ++    QG+          I ++G++NAGKS+LFN + +  V     
Sbjct: 168 RERIKAILRRLEKVAKQREQGRRARSRAEIPTISLVGYTNAGKSTLFNRITEAGVYAADQ 227

Query: 250 IPGTTRDVLT-IDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLK 306
           +  T    L  IDL   G  V ++DT G IR    D+V     K T  E + AD++L + 
Sbjct: 228 LFATLDPTLRKIDLADVGPAV-LADTVGFIRHLPHDLV--AAFKATLQETQEADILLHVV 284

Query: 307 EINSKKEISFPKNIDFI 323
           + + ++   F +NI  +
Sbjct: 285 DASDER---FRENIQAV 298


>gi|259046831|ref|ZP_05737232.1| GTP-binding protein Era [Granulicatella adiacens ATCC 49175]
 gi|259036454|gb|EEW37709.1| GTP-binding protein Era [Granulicatella adiacens ATCC 49175]
          Length = 302

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 45/91 (49%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 10  VAIVGRPNVGKSTFMNYVLGQKIAIMSDKAQTTRNKIQGVYTKDNAQIVFLDTPGIHKPK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK 312
             + +  +K  +  ++  D +L +  ++ K+
Sbjct: 70  HELGEFMVKSAYSALKEVDAVLFMVNVSEKR 100


>gi|255019674|ref|ZP_05291753.1| GTP-binding protein Era [Acidithiobacillus caldus ATCC 51756]
 gi|254970897|gb|EET28380.1| GTP-binding protein Era [Acidithiobacillus caldus ATCC 51756]
          Length = 300

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 41/86 (47%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + ++I    P TTRD +          +   DT G+    
Sbjct: 13  VALVGRPNVGKSTLLNHLIGQKISITAPRPQTTRDQILGVWTRGQAQILFLDTPGVHRGY 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307
             + +  ++ T   ++ ADL +L+ E
Sbjct: 73  RRLNRHLLRATRAALDGADLGILVVE 98


>gi|212694988|ref|ZP_03303116.1| hypothetical protein BACDOR_04525 [Bacteroides dorei DSM 17855]
 gi|237710675|ref|ZP_04541156.1| GTPase EngB [Bacteroides sp. 9_1_42FAA]
 gi|265750348|ref|ZP_06086411.1| ribosome biogenesis GTP-binding protein YsxC [Bacteroides sp.
           3_1_33FAA]
 gi|212662441|gb|EEB23015.1| hypothetical protein BACDOR_04525 [Bacteroides dorei DSM 17855]
 gi|229455397|gb|EEO61118.1| GTPase EngB [Bacteroides sp. 9_1_42FAA]
 gi|263237244|gb|EEZ22694.1| ribosome biogenesis GTP-binding protein YsxC [Bacteroides sp.
           3_1_33FAA]
          Length = 200

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 15/152 (9%)

Query: 225 LGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           +G SN GKSSL N L K+  +A+ +  PG T  +    ++ E YLV +            
Sbjct: 29  IGRSNVGKSSLINMLTKRPKLAMTSSTPGKTLLINHFLINKEWYLVDLPGYGYASRGKKQ 88

Query: 284 VEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---IGTKSDLYSTYTEE 338
           VEK  + I+   LE E    + +L  I+ + E   P+ ID  F   +G     +S    +
Sbjct: 89  VEKIQQIIEDYILEREQMTNLFVL--IDCRLE---PQKIDLEFMEWLGENGVPFSIIFTK 143

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D L    T   +++ +NK    L+ ++++LP
Sbjct: 144 ADKL----TNGKVKDNVNKYLKKLTEQWEELP 171


>gi|126696282|ref|YP_001091168.1| GTPase SAR1 and related small G protein [Prochlorococcus marinus
           str. MIT 9301]
 gi|126543325|gb|ABO17567.1| GTPase SAR1 and related small G protein [Prochlorococcus marinus
           str. MIT 9301]
          Length = 499

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 14/117 (11%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           E+LN   + KN + S +  G         YK+ + G  ++GK+S+  +L K  V   +  
Sbjct: 98  ELLN---YQKNKLESQLKTG--------DYKVTLFGAGSSGKTSIARSLLKNIVGETSAK 146

Query: 251 PGTTRDV--LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            GTT+ +    I + +    + I DT G+ E   + E E  K T ++  N+DL+L +
Sbjct: 147 IGTTKQINSYKIRIPILKRNINILDTPGLFEPSKLGE-EREKATIIQASNSDLVLFV 202


>gi|15895894|ref|NP_349243.1| ribosome biogenesis GTP-binding protein YsxC [Clostridium
           acetobutylicum ATCC 824]
 gi|24418388|sp|Q97FU0|ENGB_CLOAB RecName: Full=Probable GTP-binding protein EngB
 gi|15025663|gb|AAK80583.1|AE007761_2 Predicted GTPase, YSXC B.subtilis ortholog [Clostridium
           acetobutylicum ATCC 824]
 gi|325510046|gb|ADZ21682.1| GTPase EngB [Clostridium acetobutylicum EA 2018]
          Length = 200

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 45/175 (25%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR---------DVLTIDLDLEGYLVKI 271
           I  +G SN GKSSL NA+  ++ +  V+  PG TR         D   +DL   GY  K+
Sbjct: 26  IAFVGRSNVGKSSLINAITNRRKLVKVSGTPGKTRLVNFFMINNDFYFVDLPGYGY-AKV 84

Query: 272 SDTAGIRETDDI----VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF----- 322
           S     + +  I    V +E +K+  L V++       +   +K +I+    I +     
Sbjct: 85  SKKELEKWSQTIEGYLVGREQLKKVILLVDS-------RHKPTKDDITMYNWIKYYDYKC 137

Query: 323 IFIGTKSD-----------------LYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           I I TKSD                 L    ++E+ +  SS T +G +ELIN I S
Sbjct: 138 IVIATKSDKIKRSEKVKNEKLIKETLKFNDSDEF-YFFSSATKQGRDELINNICS 191


>gi|327400091|ref|YP_004340930.1| ferrous iron transport protein B [Archaeoglobus veneficus SNP6]
 gi|327315599|gb|AEA46215.1| ferrous iron transport protein B [Archaeoglobus veneficus SNP6]
          Length = 565

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GK++L NAL       V + PGTT +       + G  V+  D  GI   
Sbjct: 3   KVAMVGNPNVGKTALLNALTGGSFE-VGNFPGTTVEKKEGRAVINGVEVEFVDLPGIYSL 61

Query: 281 DDIVEKEGIKRTFLEVENADLIL 303
           +     E I R +L  E  D++L
Sbjct: 62  EAYSLDEKIARDYLVNEKPDVVL 84


>gi|227495954|ref|ZP_03926265.1| GTP-binding protein Era [Actinomyces urogenitalis DSM 15434]
 gi|226834508|gb|EEH66891.1| GTP-binding protein Era [Actinomyces urogenitalis DSM 15434]
          Length = 351

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+  ++ G  NAGKS+L NAL    VAI +  P TTR  +   +  E   + + D
Sbjct: 48  EDFRAGFACLV-GRPNAGKSTLTNALVGSKVAITSGRPQTTRHNVRGVVHREDAQLVLVD 106

Query: 274 TAGI 277
           T G+
Sbjct: 107 TPGL 110


>gi|189468235|ref|ZP_03017020.1| hypothetical protein BACINT_04631 [Bacteroides intestinalis DSM
           17393]
 gi|189436499|gb|EDV05484.1| hypothetical protein BACINT_04631 [Bacteroides intestinalis DSM
           17393]
          Length = 419

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 22/129 (17%)

Query: 192 VLNDILFLKN-----DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-- 244
           +LN +  LK      D      +   G +IR      ++G++N GKS+L N LAK +V  
Sbjct: 187 ILNRMSLLKERLAEIDKQKATQRKNRGRMIRAA----LVGYTNVGKSTLMNLLAKSEVFA 242

Query: 245 --AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300
              +   +  T R V+  +L    +L  +SDT G IR+   D+V  +  K T  EV  AD
Sbjct: 243 ENKLFATLDTTVRKVIIDNL---PFL--LSDTVGFIRKLPTDLV--DSFKSTLDEVREAD 295

Query: 301 LILLLKEIN 309
           L+L + +I+
Sbjct: 296 LLLHIVDIS 304


>gi|332531846|ref|ZP_08407731.1| GTP-binding protein HflX [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038822|gb|EGI75264.1| GTP-binding protein HflX [Pseudoalteromonas haloplanktis ANT/505]
          Length = 429

 Score = 36.6 bits (83), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 83/208 (39%), Gaps = 42/208 (20%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TID 261
           ++    QG+          + ++G++NAGKS+LFN +   DV     +  T    L  ++
Sbjct: 181 VAVQREQGRRARTRNEIPTVSLVGYTNAGKSTLFNRITNSDVYAADQLFATLDPTLRKLE 240

Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL---------------- 303
           L   G ++ ++DT G IR    D+V     K T  E   ADL L                
Sbjct: 241 LGDVGSVI-LADTVGFIRHLPHDLV--AAFKATLTETREADLQLHVIDAADSRLQENIEQ 297

Query: 304 ---LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGL 351
              +LKEI + +       +  + I  K D     +   D           +S+ TGEG 
Sbjct: 298 VQSVLKEIEADE-------VPQLLIYNKIDALDNVSPRIDRDDEGQPIRVWLSAQTGEGC 350

Query: 352 EELINKIKSILSNK-FKKLPFSIPSHKR 378
           E L   I  +L+ K F +  F  P + R
Sbjct: 351 ELLSEAISELLAKKMFNETLFLTPLYGR 378


>gi|294500953|ref|YP_003564653.1| ribosome biogenesis GTPase A [Bacillus megaterium QM B1551]
 gi|294350890|gb|ADE71219.1| ribosome biogenesis GTPase A [Bacillus megaterium QM B1551]
          Length = 288

 Score = 36.6 bits (83), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKS+L N LA K +A   D PG T+    I +   G  +++ DT GI
Sbjct: 123 RAMIVGIPNVGKSTLINRLASKKIAKTGDRPGVTQAQQWIKV---GNELELLDTPGI 176


>gi|260427894|ref|ZP_05781873.1| GTP-binding protein HflX [Citreicella sp. SE45]
 gi|260422386|gb|EEX15637.1| GTP-binding protein HflX [Citreicella sp. SE45]
          Length = 417

 Score = 36.6 bits (83), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 25/168 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN L   +V +  D+   T D     + L  G  V +SDT G    
Sbjct: 199 VALVGYTNAGKSTLFNRLTGAEV-MAKDMLFATLDPTMRAVRLPTGIEVILSDTVGFISD 257

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKE----------ISFPKNIDFIFIGT 327
                    + T  EV  AD+++ +++I   N++++          +   + +  I +  
Sbjct: 258 LPTELVAAFRATLEEVLAADVVVHVRDISHPNTEEQSEDVETILASLGLDEEVPRIEVWN 317

Query: 328 KSD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           K D          L     EE  + +S+ TG+GL+ ++  +  +L  +
Sbjct: 318 KIDRLHPDERDALLTRAEREEQVYAVSALTGDGLDVMLRAVTDLLQGE 365


>gi|240102259|ref|YP_002958567.1| GTP-binding protein, HSR1-related GTPase [Thermococcus
           gammatolerans EJ3]
 gi|239909812|gb|ACS32703.1| GTP-binding protein, HSR1-related GTPase [Thermococcus
           gammatolerans EJ3]
          Length = 339

 Score = 36.6 bits (83), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           LGE  +   K+ ++G+ N GKS++ N L  K       IPG T+    I L  + +L+  
Sbjct: 82  LGE--KEKVKVALIGYPNVGKSTIINTLKGKRAVGTAPIPGYTKGKHLIRLSKKLWLL-- 137

Query: 272 SDTAGIRETDDIVE 285
            D+ G+   DD  E
Sbjct: 138 -DSPGVVPIDDFDE 150


>gi|237744888|ref|ZP_04575369.1| GTP-binding protein [Fusobacterium sp. 7_1]
 gi|229432117|gb|EEO42329.1| GTP-binding protein [Fusobacterium sp. 7_1]
          Length = 366

 Score = 36.6 bits (83), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           K+     +G   +++G +N GKSS+ N L  K +A V+  PGTT
Sbjct: 151 KIKHFYPDGVNAMVIGVTNVGKSSVINRLLGKKIATVSKYPGTT 194


>gi|169594774|ref|XP_001790811.1| hypothetical protein SNOG_00116 [Phaeosphaeria nodorum SN15]
 gi|160700936|gb|EAT91611.2| hypothetical protein SNOG_00116 [Phaeosphaeria nodorum SN15]
          Length = 604

 Score = 36.6 bits (83), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GKSS+ N L KK V +V  I G T+    I L    Y++   D  G
Sbjct: 323 RKQISVGMVGYPNTGKSSIINTLRKKKVCVVAPIAGETKVWQYITLMKRIYMI---DCPG 379

Query: 277 I-RETDDIVEKEGIKRTFLEVENAD 300
           I     D  +++ + R  + VEN +
Sbjct: 380 IVPPNQDDTDEDLLLRGSVRVENVE 404


>gi|91206092|ref|YP_538447.1| GTPase EngB [Rickettsia bellii RML369-C]
 gi|157826475|ref|YP_001495539.1| ribosome biogenesis GTP-binding protein YsxC [Rickettsia bellii OSU
           85-389]
 gi|119369249|sp|Q1RH06|ENGB_RICBR RecName: Full=Probable GTP-binding protein EngB
 gi|166225974|sp|A8GUK6|ENGB_RICB8 RecName: Full=Probable GTP-binding protein EngB
 gi|91069636|gb|ABE05358.1| Hypothetical GTP-binding protein [Rickettsia bellii RML369-C]
 gi|157801779|gb|ABV78502.1| GTPase EngB [Rickettsia bellii OSU 85-389]
          Length = 212

 Score = 36.6 bits (83), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 8/55 (14%)

Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL-------DLEGY 267
           +I  +G SN GKSSL N +   K +A V++ PG TR +   +L       DL GY
Sbjct: 41  QIAFVGKSNVGKSSLINTICNNKKLAKVSNTPGRTRQINFFNLVDKLIIVDLPGY 95


>gi|317480454|ref|ZP_07939550.1| ferrous iron transporter B [Bacteroides sp. 4_1_36]
 gi|316903401|gb|EFV25259.1| ferrous iron transporter B [Bacteroides sp. 4_1_36]
          Length = 823

 Score = 36.6 bits (83), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           ++E+ VQ     E L + + L  D    ++ GK     R    + ++G+ N GK+SLFN 
Sbjct: 77  AKEQAVQP-DYHEGLGENMHLGEDELKQLALGK-----RRTINVALVGNPNCGKTSLFN- 129

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           +A      V +  G T D      D +GY  +I D  G         +E   R  +  E 
Sbjct: 130 IASGSHEHVGNYSGVTVDAKEGYFDFQGYHFRIVDLPGTYSLSAYSPEEIYVRRHIINET 189

Query: 299 ADLIL 303
            D+I+
Sbjct: 190 PDIII 194


>gi|309807822|ref|ZP_07701754.1| tRNA modification GTPase MnmE domain protein [Lactobacillus iners
           LactinV 01V1-a]
 gi|308168924|gb|EFO71010.1| tRNA modification GTPase MnmE domain protein [Lactobacillus iners
           LactinV 01V1-a]
          Length = 69

 Score = 36.6 bits (83), Expect = 8.4,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD++  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 31  LDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 69


>gi|73541768|ref|YP_296288.1| small GTP-binding protein domain-containing protein [Ralstonia
           eutropha JMP134]
 gi|72119181|gb|AAZ61444.1| Small GTP-binding protein domain [Ralstonia eutropha JMP134]
          Length = 414

 Score = 36.6 bits (83), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 7/117 (5%)

Query: 199 LKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           LK+D++    Q +     R   +   I ++G++NAGKS+LFNAL K        +  T  
Sbjct: 178 LKSDLARLQRQHRTQRRARARNDTLSISLVGYTNAGKSTLFNALTKAGAYAANQLFATL- 236

Query: 256 DVLTIDLDLEGY-LVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           D  +  + L+G   V +SDT G IR+    +  E  + T  E  +ADL+L + + +S
Sbjct: 237 DTTSRRMFLDGLGNVVLSDTVGFIRDLPTQL-VEAFRATLDETVHADLLLHVVDASS 292


>gi|34499840|ref|NP_904055.1| ribosome biogenesis GTP-binding protein YsxC [Chromobacterium
           violaceum ATCC 12472]
 gi|81654051|sp|Q7NPV7|ENGB_CHRVO RecName: Full=Probable GTP-binding protein EngB
 gi|34105690|gb|AAQ62044.1| GTP-binding protein [Chromobacterium violaceum ATCC 12472]
          Length = 206

 Score = 36.6 bits (83), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           ++  +G SNAGKSS  N LA +  +A V+  PG T+ +   +L  E +LV +
Sbjct: 25  EVAFVGRSNAGKSSAINTLANRTRLAYVSKTPGRTQHINFFELGDECFLVDL 76


>gi|302143031|emb|CBI20326.3| unnamed protein product [Vitis vinifera]
          Length = 466

 Score = 36.6 bits (83), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 14/96 (14%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-------DLEGYLVKISDTAGI 277
           +G+ N GKSS+ N L  K+V  V  IPG T+    I L       D  G + + SD+   
Sbjct: 272 VGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNSDS--- 328

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            ET D+V K  ++ T LE  +  +  +LK +  KKE
Sbjct: 329 -ET-DVVLKGVVRVTNLEDASEHIGEVLKRV--KKE 360


>gi|229109498|ref|ZP_04239089.1| GTPase [Bacillus cereus Rock1-15]
 gi|228673917|gb|EEL29170.1| GTPase [Bacillus cereus Rock1-15]
          Length = 349

 Score = 36.6 bits (83), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 14/101 (13%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRD 256
           H     L + + +G  I ++G S  GKS+L NAL   +VA   DI           T R+
Sbjct: 180 HTGIDSLKQFVSSGKTIALVGSSGVGKSTLLNALIGIEVAKTGDIREEDSRGRHTTTHRE 239

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +  +     G LV   DT G+RE       E I+ TF ++E
Sbjct: 240 LFQLP---SGALV--IDTPGMRELQLWEGSEAIQTTFSDIE 275


>gi|160933533|ref|ZP_02080921.1| hypothetical protein CLOLEP_02379 [Clostridium leptum DSM 753]
 gi|156867410|gb|EDO60782.1| hypothetical protein CLOLEP_02379 [Clostridium leptum DSM 753]
          Length = 199

 Score = 36.6 bits (83), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 79/200 (39%), Gaps = 45/200 (22%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA-LAKKDVAIVTDIPG 252
           N +  L    S  +  G L EI       V  G SN GKSSL N  L +K++A V+  PG
Sbjct: 5   NGVFELAAGRSGQLPAGDLPEI-------VFSGKSNVGKSSLINKLLNRKNLARVSATPG 57

Query: 253 TTRDV--LTID----LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
            T  +    +D    +DL GY       A  +   ++VE       F +  N  L++ L 
Sbjct: 58  KTATINFYRLDQARLVDLPGYGYAKVSLAEKKRWAELVEG-----YFQQERNLALVVQLV 112

Query: 307 EINSKKEISFPKNIDFIFIG--------TKSDLYSTYTEEYDHL---------------- 342
           ++           I+F+  G        TKSD  +  TE    L                
Sbjct: 113 DMRHPPTKDDLHMIEFLCDGGFPFLVALTKSDKLNQ-TERRQRLAALEEAFSDYEGLRLI 171

Query: 343 -ISSFTGEGLEELINKIKSI 361
             SS TGEG+EEL   + S+
Sbjct: 172 PFSSVTGEGVEELREILSSV 191


>gi|15606987|ref|NP_214369.1| GTP-binding protein Era [Aquifex aeolicus VF5]
 gi|3913584|sp|O67800|ERA_AQUAE RecName: Full=GTPase Era
 gi|2984240|gb|AAC07768.1| GTP-binding protein Era [Aquifex aeolicus VF5]
          Length = 301

 Score = 36.6 bits (83), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 6/94 (6%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTI-DLDLEGYLVKISD 273
           ++ GY + I+G  N GKS+L N L    V+I++   GTTR  VL + ++  E  ++ + D
Sbjct: 1   MKVGY-VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFL-D 58

Query: 274 TAGIRET--DDIVEKEGIKRTFLEVENADLILLL 305
           T GI E    D++    ++     +E AD+IL +
Sbjct: 59  TPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFM 92


>gi|220932172|ref|YP_002509080.1| ferrous iron transport protein FeoB [Halothermothrix orenii H 168]
 gi|219993482|gb|ACL70085.1| ferrous iron transport protein FeoB [Halothermothrix orenii H 168]
          Length = 616

 Score = 36.6 bits (83), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           N  KIV++G+ N GKS  FNA     V+ V++ PGTT D+ T
Sbjct: 15  NDKKIVLVGNPNVGKSIFFNAFTGIYVS-VSNYPGTTLDIST 55


>gi|228939171|ref|ZP_04101764.1| GTPase [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228972050|ref|ZP_04132666.1| GTPase [Bacillus thuringiensis serovar thuringiensis str. T01001]
 gi|228978661|ref|ZP_04139032.1| GTPase [Bacillus thuringiensis Bt407]
 gi|228780922|gb|EEM29129.1| GTPase [Bacillus thuringiensis Bt407]
 gi|228787534|gb|EEM35497.1| GTPase [Bacillus thuringiensis serovar thuringiensis str. T01001]
 gi|228820366|gb|EEM66398.1| GTPase [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326939749|gb|AEA15645.1| ribosome-associated GTPase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 349

 Score = 36.6 bits (83), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 14/101 (13%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRD 256
           H     L + + +G  I ++G S  GKS+L NAL   +VA   DI           T R+
Sbjct: 180 HTGIDSLKQFVSSGKTIALVGSSGVGKSTLLNALIGIEVAKTGDIREEDSRGRHTTTHRE 239

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +  +     G LV   DT G+RE       E I+ TF ++E
Sbjct: 240 LFQLP---SGALV--IDTPGMRELQLWEGSEAIQTTFSDIE 275


>gi|160892002|ref|ZP_02073005.1| hypothetical protein BACUNI_04461 [Bacteroides uniformis ATCC 8492]
 gi|156858480|gb|EDO51911.1| hypothetical protein BACUNI_04461 [Bacteroides uniformis ATCC 8492]
          Length = 844

 Score = 36.6 bits (83), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           ++E+ VQ     E L + + L  D    ++ GK     R    + ++G+ N GK+SLFN 
Sbjct: 98  AKEQAVQP-DYHEGLGENMHLGEDELKQLALGK-----RRTINVALVGNPNCGKTSLFN- 150

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           +A      V +  G T D      D +GY  +I D  G         +E   R  +  E 
Sbjct: 151 IASGSHEHVGNYSGVTVDAKEGYFDFQGYHFRIVDLPGTYSLSAYSPEEIYVRRHIINET 210

Query: 299 ADLIL 303
            D+I+
Sbjct: 211 PDIII 215


>gi|322701230|gb|EFY92980.1| ribosome biogenesis GTPase Lsg1, putative [Metarhizium acridum CQMa
           102]
          Length = 642

 Score = 36.6 bits (83), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 10/83 (12%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+ED Q  + +E L DI FL++      S  KL        ++ ++G+ N GKSS  NAL
Sbjct: 307 EDEDTQILTVEE-LEDI-FLQHSPKDAASDHKL--------QVGLVGYPNVGKSSTINAL 356

Query: 240 AKKDVAIVTDIPGTTRDVLTIDL 262
                  V+  PG T+   TI L
Sbjct: 357 IGAKKVSVSSTPGKTKHFQTIHL 379


>gi|256026609|ref|ZP_05440443.1| GTP-binding protein [Fusobacterium sp. D11]
 gi|260494669|ref|ZP_05814799.1| ribosome biogenesis GTPase YqeH [Fusobacterium sp. 3_1_33]
 gi|289764610|ref|ZP_06523988.1| GTP-binding protein [Fusobacterium sp. D11]
 gi|260197831|gb|EEW95348.1| ribosome biogenesis GTPase YqeH [Fusobacterium sp. 3_1_33]
 gi|289716165|gb|EFD80177.1| GTP-binding protein [Fusobacterium sp. D11]
          Length = 366

 Score = 36.6 bits (83), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           K+     +G   +++G +N GKSS+ N L  K +A V+  PGTT
Sbjct: 151 KIKHFYPDGVNAMVIGVTNVGKSSVINRLLGKKIATVSKYPGTT 194


>gi|237727065|ref|ZP_04557546.1| GTPase EngB [Bacteroides sp. D4]
 gi|229433921|gb|EEO43998.1| GTPase EngB [Bacteroides dorei 5_1_36/D4]
          Length = 200

 Score = 36.6 bits (83), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 15/152 (9%)

Query: 225 LGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           +G SN GKSSL N L K+  +A+ +  PG T  +    ++ E YLV +            
Sbjct: 29  IGRSNVGKSSLINMLTKRPKLAMTSSTPGKTLLINHFLINKEWYLVDLPGYGYASRGKKQ 88

Query: 284 VEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---IGTKSDLYSTYTEE 338
           VEK  + I+   LE E    + +L  I+ + E   P+ ID  F   +G     +S    +
Sbjct: 89  VEKIQQIIEDYILEREQMTNLFVL--IDCRLE---PQKIDLEFMEWLGENGVPFSIIFTK 143

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D L    T   +++ +NK    L+ ++++LP
Sbjct: 144 ADKL----TNGKVKDNVNKYLKKLTEQWEELP 171


>gi|217967951|ref|YP_002353457.1| ferrous iron transport protein B [Dictyoglomus turgidum DSM 6724]
 gi|217337050|gb|ACK42843.1| ferrous iron transport protein B [Dictyoglomus turgidum DSM 6724]
          Length = 659

 Score = 36.6 bits (83), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ + G+ N GKS++FN L   +     + PG T +     ++ + Y+++I+D  GI   
Sbjct: 7   RVALAGNPNVGKSTVFNQLTGLNQH-TGNWPGKTVEKKVGYVEKDHYILEITDLPGIYSL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305
                +E I R F+  E  D+++L+
Sbjct: 66  TANTLEELISREFIVKEKPDIVILI 90


>gi|301101856|ref|XP_002900016.1| guanine nucleotide-binding protein-like 3 [Phytophthora infestans
           T30-4]
 gi|262102591|gb|EEY60643.1| guanine nucleotide-binding protein-like 3 [Phytophthora infestans
           T30-4]
          Length = 583

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 13/91 (14%)

Query: 189 SKEVLNDIL--FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
           SK V  D L   LKN   SH         ++    + ++G+ N GKSS+ N+L +   A 
Sbjct: 217 SKAVGTDALMQLLKNYCRSHG--------VKTAITVGVIGYPNVGKSSVINSLKRSKAAS 268

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           V+   G T+ +  + +D +   +K+ D  GI
Sbjct: 269 VSSTAGHTKVMQEVHIDSK---IKLLDCPGI 296


>gi|254497291|ref|ZP_05110099.1| GTPase EngB [Legionella drancourtii LLAP12]
 gi|254353519|gb|EET12246.1| GTPase EngB [Legionella drancourtii LLAP12]
          Length = 203

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +GY++   G SNAGKSS  N L   K +A  +  PG T+ +    LD E  LV +
Sbjct: 25  SGYEVAFAGRSNAGKSSALNCLTGIKGLARTSKTPGRTQLINLFSLDDEHRLVDL 79


>gi|219130091|ref|XP_002185207.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403386|gb|EEC43339.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 415

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 84/188 (44%), Gaps = 28/188 (14%)

Query: 217 RNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL----VKI 271
           R G  I+ ++G++NAGKSS+ N L K  V +   +   T D  T  + L GY     V +
Sbjct: 190 RTGLPILSLVGYTNAGKSSMLNYLTKAGV-MAESMLFATLDPTTRKVKLPGYKTHPEVLL 248

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISF--------PKN 319
           +DT G  +          + T  EV+ AD+++ + ++++    K+E S           +
Sbjct: 249 TDTVGFIQKLPTHLVAAFRATLEEVQEADVLIHVIDVSNPTWRKQEQSVRSVLADIEASD 308

Query: 320 IDFIFIGTKSDLY----------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
              + +  K DL               E++   +S+  G+G+++ ++ ++  +S+    +
Sbjct: 309 KPMVRVLNKIDLLDPVEADELRCQAALEDFTVAVSALEGDGMQDFVSVVEDAMSSLLVPI 368

Query: 370 PFSIPSHK 377
              +P  K
Sbjct: 369 EVELPYSK 376


>gi|119872264|ref|YP_930271.1| small GTP-binding protein [Pyrobaculum islandicum DSM 4184]
 gi|119673672|gb|ABL87928.1| small GTP-binding protein [Pyrobaculum islandicum DSM 4184]
          Length = 344

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 9/85 (10%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           KL  I    + IV+ G  N GKSS    +  A+ +VA   + P TT+ +    + L G +
Sbjct: 160 KLPAIDPTLFTIVVAGAPNVGKSSFVRCVSSARPEVA---EYPFTTKQIHVGHIRLRGDI 216

Query: 269 VKISDTAGIRETD----DIVEKEGI 289
           V+I DT G+ +      +++EK+ I
Sbjct: 217 VQIIDTPGLLDRPLSERNVIEKQAI 241


>gi|30020142|ref|NP_831773.1| ribosome-associated GTPase [Bacillus cereus ATCC 14579]
 gi|29895692|gb|AAP08974.1| GTPase [Bacillus cereus ATCC 14579]
          Length = 349

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 14/101 (13%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRD 256
           H     L + + +G  I ++G S  GKS+L NAL   DVA   DI           T R+
Sbjct: 180 HTGIDSLKQFVSSGKTIALVGSSGVGKSTLLNALIGIDVAKTGDIREEDSRGRHTTTHRE 239

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +  +     G LV   DT G+RE       E I+  F ++E
Sbjct: 240 LFQLP---SGALV--IDTPGMRELQLWEGSEAIQTAFSDIE 275


>gi|20090251|ref|NP_616326.1| GTP-binding protein [Methanosarcina acetivorans C2A]
 gi|19915245|gb|AAM04806.1| GTP-binding protein [Methanosarcina acetivorans C2A]
          Length = 338

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 92/191 (48%), Gaps = 21/191 (10%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           K +  D+LFL N+  + +   KL ++ ++   IVI G+ N GKSS  + +      I   
Sbjct: 135 KSINKDLLFL-NEARNILR--KLPDV-QDEPTIVIAGYPNVGKSSFVSKITGASPEIAP- 189

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR---TFLEVENADLILLLK 306
            P TT+ V       +G   ++ DT G+ +   + E+  I+R   T +   +A ++ ++ 
Sbjct: 190 YPFTTKGVTIGHFIRDGIRYQVMDTPGLLDRP-MAERNDIERQAITAIHFLDAVVMFIMD 248

Query: 307 -------EINSKK----EISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLEEL 354
                  EI  +K    EI    ++  + +  K+D       +E +  IS+ TGEG+EE+
Sbjct: 249 PSESCGYEIEDQKRLLAEIRENFDLPLLVVANKADRPEFRKMDEIELNISTITGEGIEEV 308

Query: 355 INKIKSILSNK 365
           ++++  ++  K
Sbjct: 309 MDRLLEMIEEK 319


>gi|256599907|pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
           End Of 16s Rrna
          Length = 308

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 6/94 (6%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTI-DLDLEGYLVKISD 273
           ++ GY + I+G  N GKS+L N L    V+I++   GTTR  VL + ++  E  ++ + D
Sbjct: 8   MKVGY-VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFL-D 65

Query: 274 TAGIRET--DDIVEKEGIKRTFLEVENADLILLL 305
           T GI E    D++    ++     +E AD+IL +
Sbjct: 66  TPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFM 99


>gi|255082732|ref|XP_002504352.1| predicted protein [Micromonas sp. RCC299]
 gi|226519620|gb|ACO65610.1| predicted protein [Micromonas sp. RCC299]
          Length = 195

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 23/164 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ ++G SN GKSSL N L K K  A+V+  PGTT+ +    +  + ++V +      + 
Sbjct: 24  EVAVIGRSNVGKSSLLNLLTKGKSGALVSSKPGTTQHINHYLVAKKWWIVDLPGYGFAKA 83

Query: 280 TDDIVEKEG--IKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKS 329
           + +  E      K  F    N   +LLL + +    +K++ +       N+ F  + TK 
Sbjct: 84  SKESTEMWDRFTKEYFTTRSNLAGVLLLIDASIPPMEKDLEYADWLITHNVPFTIVHTKC 143

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           D         D              I++++ IL  K+ +LP  I
Sbjct: 144 DRNKPGMPAVD------------TNIDELRRILDEKWHRLPSMI 175


>gi|303279248|ref|XP_003058917.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460077|gb|EEH57372.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 450

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G+ N GKSS+ NAL  K V +   IPG T+    ++L    +L+   D  G+
Sbjct: 302 IGYPNVGKSSVINALRTKKVCVTAPIPGETKVWQYVNLTKRIFLI---DCPGV 351


>gi|222054805|ref|YP_002537167.1| GTP-binding proten HflX [Geobacter sp. FRC-32]
 gi|221564094|gb|ACM20066.1| GTP-binding proten HflX [Geobacter sp. FRC-32]
          Length = 552

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 9/106 (8%)

Query: 205 SHISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLT 259
           SH    +  + ++ G  I+ I+G++NAGKS+L N L + DV     +   +  +TR  L 
Sbjct: 353 SHGRYQRRQKRVKAGLPIISIVGYTNAGKSTLLNTLTQSDVFTENLLFATLDTSTRR-LR 411

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
              D E   V I+DT G   +         K T  E+++ADL+L L
Sbjct: 412 FPRDRE---VIITDTVGFIRSLPKSLMGAFKATLEELQDADLLLHL 454


>gi|206901349|ref|YP_002251279.1| ferrous iron transport protein B [Dictyoglomus thermophilum H-6-12]
 gi|206740452|gb|ACI19510.1| ferrous iron transport protein B [Dictyoglomus thermophilum H-6-12]
          Length = 659

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   ++ ++G+ N GKS++FN L   +     + PG T +     ++ + Y+++I+D  G
Sbjct: 3   RIKIRVALVGNPNVGKSTVFNQLTGLNQH-TGNWPGKTVEKKIGYVNKDKYILEITDLPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305
           I        +E I R F+  E  D+++L+
Sbjct: 62  IYSLTANSLEEVISREFIIKEKPDIVILI 90


>gi|218236129|ref|YP_002366727.1| ribosome-associated GTPase [Bacillus cereus B4264]
 gi|218164086|gb|ACK64078.1| ribosome small subunit-dependent GTPase A [Bacillus cereus B4264]
          Length = 349

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 14/101 (13%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRD 256
           H     L + + +G  I ++G S  GKS+L NAL   +VA   DI           T R+
Sbjct: 180 HTGIDSLKQFVSSGKTIALVGSSGVGKSTLLNALIGIEVAKTGDIREEDSRGRHTTTHRE 239

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +  +     G LV   DT G+RE       E I+ TF ++E
Sbjct: 240 LFQLP---SGALV--IDTPGMRELQLWEGSEAIQTTFSDIE 275


>gi|149194640|ref|ZP_01871736.1| GTPase EngB [Caminibacter mediatlanticus TB-2]
 gi|149135384|gb|EDM23864.1| GTPase EngB [Caminibacter mediatlanticus TB-2]
          Length = 197

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           N  ++ +LG SN GKSS  N    + +A V+  PG T+ +   +++ +G    + D  G
Sbjct: 19  NFTEVALLGRSNVGKSSFLNTFTNQKIAKVSSTPGKTKLINFFEIEDKGKKYVLVDLPG 77


>gi|71893508|ref|YP_278954.1| GTP-binding protein Era [Mycoplasma hyopneumoniae J]
 gi|71851635|gb|AAZ44243.1| GTP-binding protein [Mycoplasma hyopneumoniae J]
          Length = 293

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N+L +  V+IV+    TTRD +    + +   +   DT G     
Sbjct: 9   VAIVGLPNVGKSSLINSLVEFPVSIVSLKSQTTRDAINAIYNKDNLQILFVDTPGFHMRI 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---------KKEISFPKNIDFIFIGTKSDL 331
           + +           +E  DL+L L  ++           K+I+  KN++ I + TK+DL
Sbjct: 69  NNLSNSLNYAINSTLEGIDLVLFLHPVDKPVDQNTRFLAKKIA--KNMNKIVLITKTDL 125


>gi|19704407|ref|NP_603969.1| GTP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714665|gb|AAL95268.1| GTP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 366

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           K+     +G   +++G +N GKSS+ N L  K +A V+  PGTT
Sbjct: 151 KIKHFYPDGVNAMVIGVTNVGKSSVINRLLGKKIATVSKYPGTT 194


>gi|34763137|ref|ZP_00144106.1| GTP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887200|gb|EAA24302.1| GTP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 366

 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           K+     +G   +++G +N GKSS+ N L  K +A V+  PGTT
Sbjct: 151 KIKHFYPDGVNAMVIGVTNVGKSSVINRLLGKKIATVSKYPGTT 194


>gi|254974410|ref|ZP_05270882.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-66c26]
 gi|255091801|ref|ZP_05321279.1| putative ATP/GTP-binding protein [Clostridium difficile CIP 107932]
 gi|255313536|ref|ZP_05355119.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-76w55]
 gi|255516221|ref|ZP_05383897.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-97b34]
 gi|255649318|ref|ZP_05396220.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-37x79]
 gi|260682488|ref|YP_003213773.1| putative ATP/GTP-binding protein [Clostridium difficile CD196]
 gi|260686087|ref|YP_003217220.1| putative ATP/GTP-binding protein [Clostridium difficile R20291]
 gi|306519413|ref|ZP_07405760.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-32g58]
 gi|260208651|emb|CBA61408.1| putative ATP/GTP-binding protein [Clostridium difficile CD196]
 gi|260212103|emb|CBE02716.1| putative ATP/GTP-binding protein [Clostridium difficile R20291]
          Length = 427

 Score = 36.6 bits (83), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 38/191 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVK------ISD 273
           + ++G++NAGKS+L N L K       +     +D+L  T+D+ L   L+       + D
Sbjct: 204 VALVGYTNAGKSTLLNELIKTHKDYEQEKEVFVKDMLFATLDVTLRKALLPNKKEFLVVD 263

Query: 274 TAGI--RETDDIVEKEGIKRTFLEVENADLIL-------------------LLKE--INS 310
           T G   +   D+V  E  K T  EV+ ADLIL                   +LKE  +N 
Sbjct: 264 TVGFVSKLPHDLV--EAFKATLEEVQYADLILHVIDATNTSYELQKSTTEGVLKELGVND 321

Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
           KK I     +D + +    D+Y    E+  + IS+  G  +++L+N I+  L      + 
Sbjct: 322 KKHILVYNKVDKLEL----DIYPKSQEDIVY-ISAKQGINMDKLLNMIEIALMENTYSVS 376

Query: 371 FSIPSHKRHLY 381
             +P  +  ++
Sbjct: 377 LMLPYERGDIF 387


>gi|330843879|ref|XP_003293870.1| hypothetical protein DICPUDRAFT_84383 [Dictyostelium purpureum]
 gi|325075751|gb|EGC29602.1| hypothetical protein DICPUDRAFT_84383 [Dictyostelium purpureum]
          Length = 423

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 11/99 (11%)

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI--LG 226
           +  +E   +  E+  ++ F  +E+L + L L         Q K  +  R   ++V+   G
Sbjct: 245 KELLEQQNESEEDRKIKIFDREEILEEFLKL---------QPKPLQDNRYNNRVVVGLAG 295

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           + N GKSS  N L  +    V   PG T+ V TI LD E
Sbjct: 296 YPNVGKSSTINVLYGEKKVAVAPTPGKTKYVQTIILDEE 334


>gi|322703500|gb|EFY95108.1| ribosome biogenesis GTPase Lsg1, putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 642

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 10/83 (12%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+ED Q  + +E L DI FL++      S  KL        ++ ++G+ N GKSS  NAL
Sbjct: 307 EDEDTQILTVEE-LEDI-FLQHSPKDAASDHKL--------QVGLVGYPNVGKSSTINAL 356

Query: 240 AKKDVAIVTDIPGTTRDVLTIDL 262
                  V+  PG T+   TI L
Sbjct: 357 IGAKKVSVSSTPGKTKHFQTIHL 379


>gi|229150269|ref|ZP_04278489.1| GTPase [Bacillus cereus m1550]
 gi|228633167|gb|EEK89776.1| GTPase [Bacillus cereus m1550]
          Length = 349

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 14/101 (13%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRD 256
           H     L + + +G  I ++G S  GKS+L NAL   +VA   DI           T R+
Sbjct: 180 HTGIDSLKQFVSSGKTIALVGSSGVGKSTLLNALIGIEVAKTGDIREEDSRGRHTTTHRE 239

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +  +     G LV   DT G+RE       E I+ TF ++E
Sbjct: 240 LFQLP---SGALV--IDTPGMRELQLWEGSEAIQTTFSDIE 275


>gi|255075391|ref|XP_002501370.1| predicted protein [Micromonas sp. RCC299]
 gi|226516634|gb|ACO62628.1| predicted protein [Micromonas sp. RCC299]
          Length = 450

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G+ N GKSS+ NAL  K V +   IPG T+    ++L    +L+   D  G+
Sbjct: 302 VGYPNVGKSSVINALRTKKVCVTAPIPGETKVWQYVNLTKRIFLI---DCPGV 351


>gi|52081117|ref|YP_079908.1| GTP-binding protein YqeH [Bacillus licheniformis ATCC 14580]
 gi|52786495|ref|YP_092324.1| GTP-binding protein YqeH [Bacillus licheniformis ATCC 14580]
 gi|319644926|ref|ZP_07999159.1| YqeH protein [Bacillus sp. BT1B_CT2]
 gi|52004328|gb|AAU24270.1| essential GTPase [Bacillus licheniformis ATCC 14580]
 gi|52348997|gb|AAU41631.1| YqeH [Bacillus licheniformis ATCC 14580]
 gi|317392735|gb|EFV73529.1| YqeH protein [Bacillus sp. BT1B_CT2]
          Length = 366

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R G  + ++G +N GKS+  N + K+     D+   +  PGTT D + I LD +G  
Sbjct: 154 EHYRQGKDVYVVGCTNVGKSTFINRIIKEVSGEDDIITTSQYPGTTLDAIEIPLD-DGS- 211

Query: 269 VKISDTAGI 277
             + DT GI
Sbjct: 212 -AMYDTPGI 219


>gi|315655925|ref|ZP_07908823.1| GTP-binding protein [Mobiluncus curtisii ATCC 51333]
 gi|315489989|gb|EFU79616.1| GTP-binding protein [Mobiluncus curtisii ATCC 51333]
          Length = 352

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 11/86 (12%)

Query: 219 GYKIVILGHSNAGKSSLFNAL---AKKDVAIVTDIPG----TTRDVLTIDLDLEGYLVKI 271
           G   V+LGHS  GKS+L NAL   A +    V ++ G    T+   + + +  +G+L+  
Sbjct: 224 GEVTVLLGHSGVGKSTLVNALVPGANRATGEVNEVTGKGRHTSTSAVALPIGSQGWLI-- 281

Query: 272 SDTAGIRETD-DIVEKEGIKRTFLEV 296
            DT G+R      V+  G+ R F E+
Sbjct: 282 -DTPGVRSFGLAHVDAAGLLRGFTEL 306


>gi|302342079|ref|YP_003806608.1| ferrous iron transport protein B [Desulfarculus baarsii DSM 2075]
 gi|301638692|gb|ADK84014.1| ferrous iron transport protein B [Desulfarculus baarsii DSM 2075]
          Length = 713

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 7/80 (8%)

Query: 219 GYKIVIL--GHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           G KIV+   G+ NAGK+SLFNAL  A++ V    + PG T +  +     EG L +I D 
Sbjct: 3   GGKIVVALAGNPNAGKTSLFNALTGARQHVG---NYPGITVEKKSGQAQREGQLFEIVDL 59

Query: 275 AGIRETDDIVEKEGIKRTFL 294
            G         +E + R F+
Sbjct: 60  PGTYSLSAYSLEEVVARNFI 79


>gi|229127441|ref|ZP_04256434.1| GTPase [Bacillus cereus BDRD-Cer4]
 gi|228655982|gb|EEL11827.1| GTPase [Bacillus cereus BDRD-Cer4]
          Length = 346

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 14/101 (13%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRD 256
           H     L + + +G  I ++G S  GKS+L NAL   DVA   DI           T R+
Sbjct: 180 HTGIDSLKQFVSSGKTIALVGSSGVGKSTLLNALIGIDVAKTGDIREEDSRGRHTTTHRE 239

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +  +     G LV   DT G+RE       E I+  F ++E
Sbjct: 240 LFQLP---SGALV--IDTPGMRELQLWEGSEAIQTAFSDIE 275


>gi|90022311|ref|YP_528138.1| putative GTP-binding protein [Saccharophagus degradans 2-40]
 gi|89951911|gb|ABD81926.1| Small GTP-binding protein domain [Saccharophagus degradans 2-40]
          Length = 441

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 36/211 (17%)

Query: 209 QGKLGEIIRNGYKIVIL---GHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTID 261
           Q + G   RN  +I  L   G++NAGKS+LFNA+    V     +   +  T R +   D
Sbjct: 185 QREQGRRARNRAEIPTLSLVGYTNAGKSTLFNAITDAGVYAEDKLFATLDPTMRRIGLRD 244

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID 321
           +   G  + ++DT G          E  + T  E  +AD++L + +    +     + + 
Sbjct: 245 V---GPAI-LADTVGFISNLPHRLVEAFRATLEEAASADILLHVVDAADDERARNIEQVK 300

Query: 322 FIF------------IGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKS 360
            +             +  K DL S      D           +S+ +G G+E+L+  I  
Sbjct: 301 LVLNEIGAGDLPVLMVHNKIDLLSNVDARIDRDDLGKPVAVWLSAQSGAGIEQLMEAITE 360

Query: 361 ILSNKFKK----LPFSIPSHKRHLYHLSQTV 387
           +LS+        LP S+ S +  LY  +  V
Sbjct: 361 LLSDNIVHQKVLLPASMGSLRARLYRQNAVV 391


>gi|118359794|ref|XP_001013135.1| Ras family protein [Tetrahymena thermophila]
 gi|89294902|gb|EAR92890.1| Ras family protein [Tetrahymena thermophila SB210]
 gi|307777828|dbj|BAJ21310.1| Rab-family small GTPase RabX4 [Tetrahymena thermophila]
          Length = 215

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++ILG S+ GK++L N  A+ +    +   G    +  I++D +   + + DTAG    
Sbjct: 9   KLLILGESSVGKTALLNRFAQNEFIPTSSSTGMDYAIKMIEIDNKKVQLSVWDTAGQERY 68

Query: 281 DDIV-----EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
             I      + +GI   F ++ NA     L++     + +  +      IGTK DL
Sbjct: 69  RSITFNLYKDSQGILLVF-DLTNAKTFQTLEKWMQLIKANINEGFQIALIGTKCDL 123


>gi|42523420|ref|NP_968800.1| GTP-binding protein Era [Bdellovibrio bacteriovorus HD100]
 gi|39575626|emb|CAE79793.1| GTP-binding protein Era [Bdellovibrio bacteriovorus HD100]
          Length = 303

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  NAGKS+L N L  + V+IV+  P TTR  +      E   V   D  G+ + D  
Sbjct: 10  LIGQPNAGKSTLMNFLVDEKVSIVSSKPQTTRRRILGIWSTEKGQVIFVDAPGLIKAD-- 67

Query: 284 VEKEGIKRTFLEVENADLI 302
              EG+   FL  E  D+I
Sbjct: 68  ---EGL-NGFLAQEAHDVI 82


>gi|296328240|ref|ZP_06870770.1| ribosome biogenesis GTPase YqeH [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154640|gb|EFG95427.1| ribosome biogenesis GTPase YqeH [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 366

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           K+     +G   +++G +N GKSS+ N L  K +A V+  PGTT
Sbjct: 151 KIKHFYPDGVNAMVIGVTNVGKSSVINRLLGKKIATVSKYPGTT 194


>gi|261278788|pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
 gi|261278789|pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
 gi|261278790|pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
 gi|261278791|pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
          Length = 256

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           +++G+ N GK++LFNAL   +   V + PG T +  T +  L  +L++I+D  G+     
Sbjct: 5   LLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSL-- 61

Query: 283 IVEKEGIKR 291
           +   EGI +
Sbjct: 62  VANAEGISQ 70


>gi|224538829|ref|ZP_03679368.1| hypothetical protein BACCELL_03725 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519556|gb|EEF88661.1| hypothetical protein BACCELL_03725 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 419

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 22/129 (17%)

Query: 192 VLNDILFLKN-----DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-- 244
           +LN +  LK      D      +   G +IR      ++G++N GKS+L N LAK +V  
Sbjct: 187 ILNRMSLLKERLAEIDKQKSTQRKNRGRMIRAA----LVGYTNVGKSTLMNLLAKSEVFA 242

Query: 245 --AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300
              +   +  T R V+  +L    +L  +SDT G IR+   D+V  +  K T  EV  AD
Sbjct: 243 ENKLFATLDTTVRKVIIDNL---PFL--LSDTVGFIRKLPTDLV--DSFKSTLDEVREAD 295

Query: 301 LILLLKEIN 309
           L+L + +I+
Sbjct: 296 LLLHIVDIS 304


>gi|323449243|gb|EGB05133.1| hypothetical protein AURANDRAFT_72347 [Aureococcus anophagefferens]
          Length = 543

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS++ N+L  K V  V  IPG T+    + L      V + D  G+ +  
Sbjct: 350 VGIVGYPNVGKSAVINSLRAKQVCKVAPIPGETKVWQYVTLTKR---VNLIDCPGVADDA 406

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311
           + V K  ++   L      L+ LL+  + K
Sbjct: 407 NAVLKGVVRAERLPDPTLFLVPLLRRCDPK 436


>gi|313905842|ref|ZP_07839200.1| GTP-binding protein Era [Eubacterium cellulosolvens 6]
 gi|313469356|gb|EFR64700.1| GTP-binding protein Era [Eubacterium cellulosolvens 6]
          Length = 304

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDT 274
           +++G+ + ++G  N GKS+L N L  + +AI +  P TTR+ + TI     G +V + DT
Sbjct: 6   LKSGF-VALIGRPNVGKSTLMNHLIGQKIAITSRKPQTTRNRIQTIYNSDRGQIVFL-DT 63

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            GI +  + + +  +      ++N D ++ L E
Sbjct: 64  PGIHKAKNKLGEYMVYAAESSLKNVDAVMWLIE 96


>gi|303236066|ref|ZP_07322669.1| GTP-binding protein HflX [Prevotella disiens FB035-09AN]
 gi|302483939|gb|EFL46931.1| GTP-binding protein HflX [Prevotella disiens FB035-09AN]
          Length = 421

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 20/110 (18%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTR 255
           K  ++   ++G+L        ++ ++G++N GKS++ N LAK +V     +   +  T R
Sbjct: 203 KQKVTQRKNRGRL-------IRVALVGYTNVGKSTIMNMLAKSEVFAENKLFATLDTTVR 255

Query: 256 DVLTIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL 303
            V+     LE     ++DT G IR+   D+V  +  K T  EV  ADL++
Sbjct: 256 KVV-----LENLPFLLADTVGFIRKLPTDLV--DSFKSTLDEVREADLLV 298


>gi|326792326|ref|YP_004310147.1| ferrous iron transporter B [Clostridium lentocellum DSM 5427]
 gi|326543090|gb|ADZ84949.1| ferrous iron transport protein B [Clostridium lentocellum DSM 5427]
          Length = 723

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 12/88 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-----VKISDTA 275
           KI + G+ N GK++LFNAL   +   V + PG T +        EG L     V I D  
Sbjct: 4   KIALAGNPNCGKTTLFNALTGSN-QFVGNWPGVTVE------KKEGKLKGHEDVIIIDLP 56

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303
           GI        +E + R +L  E  D+IL
Sbjct: 57  GIYSLSPYTLEEVVARNYLINETPDVIL 84


>gi|221060130|ref|XP_002260710.1| GTPase [Plasmodium knowlesi strain H]
 gi|193810784|emb|CAQ42682.1| GTPase, putative [Plasmodium knowlesi strain H]
          Length = 788

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 174 ADLDFSEEEDVQN--FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
            +L + E ++ Q    S+ E+++ I  +KN+        ++G+     + +  +G  N G
Sbjct: 485 GNLIYEERKNDQTDILSTNEMVSLIQKIKNEKRGEYHDIEIGDYSIPKFMVGFIGFPNVG 544

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           KSS+ N+L       V+  PG T+   TI L+  G+   + D  G+
Sbjct: 545 KSSIINSLVGLKKVSVSRQPGKTKHFQTIPLNRHGFC--LCDCPGL 588


>gi|133755013|gb|ABO38686.1| Ngp [Drosophila teissieri]
          Length = 266

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 24/160 (15%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI----RET 280
           +G+ N GKSS+ NAL  K V  V  I G T+    I L    +L+   D  G+     ET
Sbjct: 4   IGYPNVGKSSVINALRSKKVCKVAPIAGETKVWQYITLMKRIFLI---DCPGVVYPTAET 60

Query: 281 DDIVEKEGIKRTFLEVENADLI-LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           D     +G+ R  L     D +  LLK + S          ++I    K + ++T T   
Sbjct: 61  DTEKVLKGVVRVELVTNPEDYVDTLLKRVRS----------EYISKNYKIEHWNTSTHFL 110

Query: 340 DHLISSFTG---EGLEELINKIKSILSNKFK--KLPFSIP 374
           + L    TG   +G E  +     ++ N ++  KLPF +P
Sbjct: 111 EQLAQK-TGKLLKGGEPDVTVTARMVLNDWQRGKLPFYVP 149


>gi|187478827|ref|YP_786851.1| GTP-binding protein [Bordetella avium 197N]
 gi|115423413|emb|CAJ49947.1| GTP-binding protein [Bordetella avium 197N]
          Length = 368

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG-IRE 279
           + ++G++NAGKS+LFNAL +   A   D    T D  T    +EG   V +SDT G IRE
Sbjct: 192 VSLVGYTNAGKSTLFNALTRAG-AYAADQLFATLDTTTRRFWIEGAGSVVLSDTVGFIRE 250

Query: 280 -TDDIVEKEGIKRTFLEVENADLIL 303
              +++     + T  E  +ADL+L
Sbjct: 251 LPPNLI--AAFRATLEETVHADLLL 273


>gi|302669315|ref|YP_003832465.1| ferrous iron transport protein B FeoB2 [Butyrivibrio
           proteoclasticus B316]
 gi|302396979|gb|ADL35883.1| ferrous iron transport protein B FeoB2 [Butyrivibrio
           proteoclasticus B316]
          Length = 671

 Score = 36.6 bits (83), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 6/112 (5%)

Query: 222 IVILGHSNAGKSSLFNALA--KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           I +LG  N+GKS+LFNAL   ++ V    + PG T +        +G    I+D  G   
Sbjct: 6   IALLGQPNSGKSTLFNALTGLRQHVG---NWPGKTVEKKEGSFSYKGMECAIADLPGSYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
                ++E I R ++    AD++ +L + +S+ E S     D+  I   S L
Sbjct: 63  LTANSDEELITREYISSGKADVVCILAD-SSQLERSLFMTADYAGIDVPSFL 113


>gi|291519874|emb|CBK75095.1| iron-only hydrogenase maturation protein HydF [Butyrivibrio
           fibrisolvens 16/4]
          Length = 394

 Score = 36.6 bits (83), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 6/101 (5%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRETDDI 283
            G  NAGKSS+ N L  +++++V+   GTT D +   ++ L    V I DTAG  +  ++
Sbjct: 17  FGIRNAGKSSIVNKLTNQEISLVSAHKGTTTDPVKKAMEILPIGPVVIIDTAGFDDEGEL 76

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKK----EISFPKNI 320
            E     RT+  ++  D+++++ +   K+    E  F KN+
Sbjct: 77  GELRK-NRTYRILDEIDIVVMVLDAREKQLSTEEADFLKNV 116


>gi|262067703|ref|ZP_06027315.1| ribosome biogenesis GTPase YqeH [Fusobacterium periodonticum ATCC
           33693]
 gi|291378428|gb|EFE85946.1| ribosome biogenesis GTPase YqeH [Fusobacterium periodonticum ATCC
           33693]
          Length = 366

 Score = 36.6 bits (83), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           K+     +G   +++G +N GKSS+ N L  K +A V+  PGTT
Sbjct: 151 KIKHFYPDGVNAMVIGVTNVGKSSVINRLLGKRIATVSKYPGTT 194


>gi|229587658|ref|YP_002869777.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas
           fluorescens SBW25]
 gi|259645904|sp|C3K6T0|ENGB_PSEFS RecName: Full=Probable GTP-binding protein EngB
 gi|229359524|emb|CAY46365.1| probable GTP-binding protein [Pseudomonas fluorescens SBW25]
          Length = 213

 Score = 36.6 bits (83), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ N IL L    +  +S  K+ +   + G+++   G SNAGKSS  N L    +A  + 
Sbjct: 2   QLKNPILGLCQQSTFMLSAAKVDQCPDDEGFEVAFAGRSNAGKSSALNTLTHASLARTSK 61

Query: 250 IPGTTR--DVLTID-----LDLEGY 267
            PG T+  +   +D     +DL GY
Sbjct: 62  TPGRTQLLNFFKLDDDRRLVDLPGY 86


>gi|303243560|ref|ZP_07329902.1| GTP-binding protein HSR1-related protein [Methanothermococcus
           okinawensis IH1]
 gi|302486121|gb|EFL49043.1| GTP-binding protein HSR1-related protein [Methanothermococcus
           okinawensis IH1]
          Length = 383

 Score = 36.6 bits (83), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 18/101 (17%)

Query: 187 FSSKEVLNDILFLKNDISSH-----ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           F S +  N    L+++I  +     I +GK+G          ++G+ N GKSSL NAL  
Sbjct: 86  FVSSKYKNGTKILRDNIKKYLQLMGIKEGKVG----------VVGYPNVGKSSLINALTG 135

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           K  A    + G T+    I L      +K+ DT G+ E  D
Sbjct: 136 KKSAASGLVAGLTKGEQWIRLTKN---IKLLDTPGVIEPKD 173


>gi|62259927|gb|AAX77873.1| unknown protein [synthetic construct]
          Length = 332

 Score = 36.6 bits (83), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           E+ + GY I I+G  N GKS+L N + K  V+I +  P TTR  +T
Sbjct: 26  EMKKCGY-ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQIT 70


>gi|259046633|ref|ZP_05737034.1| GTP-binding protein HflX [Granulicatella adiacens ATCC 49175]
 gi|259036798|gb|EEW38053.1| GTP-binding protein HflX [Granulicatella adiacens ATCC 49175]
          Length = 400

 Score = 36.6 bits (83), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           NG+++ ++G++NAGKS++ N L +     +  +  T  D LT  +DL   + V ++DT G
Sbjct: 194 NGFQLGLIGYTNAGKSTILNQLTQAGTYQMDQLFATL-DPLTRQVDLFPNFEVTLTDTVG 252


>gi|255654837|ref|ZP_05400246.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-23m63]
 gi|296449580|ref|ZP_06891357.1| GTP-binding protein HflX [Clostridium difficile NAP08]
 gi|296878097|ref|ZP_06902112.1| GTP-binding protein HflX [Clostridium difficile NAP07]
 gi|296261644|gb|EFH08462.1| GTP-binding protein HflX [Clostridium difficile NAP08]
 gi|296430850|gb|EFH16682.1| GTP-binding protein HflX [Clostridium difficile NAP07]
          Length = 427

 Score = 36.6 bits (83), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 38/191 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVK------ISD 273
           + ++G++NAGKS+L N L K       +     +D+L  T+D+ L   L+       + D
Sbjct: 204 VALVGYTNAGKSTLLNELIKTHKDYEQEKEVFVKDMLFATLDVTLRKALLPNKKEFLVVD 263

Query: 274 TAGI--RETDDIVEKEGIKRTFLEVENADLIL-------------------LLKE--INS 310
           T G   +   D+V  E  K T  EV+ ADLIL                   +LKE  +N 
Sbjct: 264 TVGFVSKLPHDLV--EAFKATLEEVQYADLILHVIDATNTSYELQKSTTEGVLKELGVND 321

Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
           KK I     +D + +    D+Y    E+  + IS+  G  +++L+N I+  L      + 
Sbjct: 322 KKHILVYNKVDKLEL----DIYPKSQEDIVY-ISAKQGINMDKLLNMIEIALMENTYSVS 376

Query: 371 FSIPSHKRHLY 381
             +P  +  ++
Sbjct: 377 LMLPYERGDIF 387


>gi|212224823|ref|YP_002308059.1| GTPase [Thermococcus onnurineus NA1]
 gi|212009780|gb|ACJ17162.1| GTPase [Thermococcus onnurineus NA1]
          Length = 357

 Score = 36.6 bits (83), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GKS++ N L  K       IPG T+    I L  + +L+   D+ G+   
Sbjct: 107 KVALIGYPNVGKSTIINTLKGKKAVGTAPIPGYTKGKQLIRLSKKIWLL---DSPGVVPI 163

Query: 281 DDIVE 285
           DD  E
Sbjct: 164 DDFDE 168


>gi|223939697|ref|ZP_03631570.1| GTP-binding proten HflX [bacterium Ellin514]
 gi|223891654|gb|EEF58142.1| GTP-binding proten HflX [bacterium Ellin514]
          Length = 414

 Score = 36.6 bits (83), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 39/187 (20%)

Query: 217 RNGYKIV-ILGHSNAGKSSLFNALAKKDV-----AIVTDIPGTTRDVLTIDLDLEGYLVK 270
           RN + +  I+G++NAGKS+L NA+   DV        T  P T R  L  + +     V 
Sbjct: 187 RNLWPLASIVGYTNAGKSTLLNAVTGADVLAENKLFATLDPTTRRLRLPTNQN-----VL 241

Query: 271 ISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEIN 309
           ++DT G IR+   ++V  E  K T  EV  ADL++                   +L EI 
Sbjct: 242 LTDTVGFIRKLPHNLV--EAFKATLEEVVQADLLIHVVDGSSPQAEEQIAAVNAVLDEIG 299

Query: 310 S--KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
           +  K  +     ID +  G ++ + S         IS+ TGEG+ EL+ ++   L    +
Sbjct: 300 AAGKPTMMVFNKIDKLVNGERNFIQSVPNAVA---ISAKTGEGIPELMAELGKQLKPIRE 356

Query: 368 KLPFSIP 374
            +  S+P
Sbjct: 357 FIELSVP 363


>gi|114706261|ref|ZP_01439163.1| GTP-binding protein Era [Fulvimarina pelagi HTCC2506]
 gi|114538122|gb|EAU41244.1| GTP-binding protein Era [Fulvimarina pelagi HTCC2506]
          Length = 318

 Score = 36.6 bits (83), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 54/99 (54%), Gaps = 3/99 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++      +   +   DT G
Sbjct: 25  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIAIKDRTQIVFVDTPG 83

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +      +++  +K  +   ++AD++L +  +++++ +S
Sbjct: 84  VFSPRRRLDRAMVKTAWSGAKDADILLAI--VDAERGVS 120


>gi|29349243|ref|NP_812746.1| GTP-binding protein Era [Bacteroides thetaiotaomicron VPI-5482]
 gi|253573090|ref|ZP_04850481.1| GTP-binding protein Era [Bacteroides sp. 1_1_6]
 gi|298384784|ref|ZP_06994343.1| GTP-binding protein Era [Bacteroides sp. 1_1_14]
 gi|29341151|gb|AAO78940.1| putative GTP-binding protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251837313|gb|EES65413.1| GTP-binding protein Era [Bacteroides sp. 1_1_6]
 gi|298261928|gb|EFI04793.1| GTP-binding protein Era [Bacteroides sp. 1_1_14]
          Length = 293

 Score = 36.6 bits (83), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 47/85 (55%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G+ N GKS+L NAL  + ++I T    TTR  +    + +   +  SDT G+ + +  
Sbjct: 9   IVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGVLKPNYK 68

Query: 284 VEKEGIKRTFLEVENADLILLLKEI 308
           +++  +  +   + +AD++L + ++
Sbjct: 69  LQESMLNFSTSALTDADVLLYVTDV 93


>gi|300933035|ref|ZP_07148291.1| putative GTP-binding protein [Corynebacterium resistens DSM 45100]
          Length = 490

 Score = 36.6 bits (83), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           ++ I G++NAGKSSL NAL    V +V D    T D  T   +L +G  V  +DT G   
Sbjct: 267 QVAIAGYTNAGKSSLINALTGAGV-LVEDALFATLDPTTRRAELADGRAVIFTDTVGFVR 325

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                  E  + T  EV  AD++L
Sbjct: 326 HLPTQLVEAFRSTLEEVMAADVVL 349


>gi|237740649|ref|ZP_04571130.1| GTP-binding protein [Fusobacterium sp. 2_1_31]
 gi|229422666|gb|EEO37713.1| GTP-binding protein [Fusobacterium sp. 2_1_31]
          Length = 366

 Score = 36.6 bits (83), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           K+     +G   +++G +N GKSS+ N L  K +A V+  PGTT
Sbjct: 151 KIKHFYPDGVNAMVIGVTNVGKSSVINRLLGKRIATVSKYPGTT 194


>gi|145349435|ref|XP_001419139.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579370|gb|ABO97432.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 443

 Score = 36.6 bits (83), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RETDD 282
           +G+ N GKSS+ NAL  K V +   IPG T+    ++L    +L+   D  G+  ++T+D
Sbjct: 294 VGYPNVGKSSVINALRSKRVCLTAPIPGETKVWQYVNLTKRIFLI---DCPGVVYQDTED 350


>gi|154253563|ref|YP_001414387.1| GTP-binding protein HSR1-like [Parvibaculum lavamentivorans DS-1]
 gi|154157513|gb|ABS64730.1| GTP-binding protein HSR1-related [Parvibaculum lavamentivorans
           DS-1]
          Length = 474

 Score = 36.6 bits (83), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 30/188 (15%)

Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI- 277
           Y IV L G++NAGKS+LFN L +  V     +  T    +   +   G  + +SDT G  
Sbjct: 226 YPIVALVGYTNAGKSTLFNRLTEAGVFAENLLFATLDPTMRALVLPSGRKIILSDTVGFI 285

Query: 278 -----------RET-DDIVEKEGI------KRTFLEVENADLILLLKEINSKKEISFPKN 319
                      R T ++++E E I            ++  D+  +L  +   +E +    
Sbjct: 286 SDLPTHLVAAFRATLEEVLEAEVILHVRDAAHEETAIQKTDVEKVLTSLGVTRESTAANG 345

Query: 320 IDFIFIGTKSDLYS----------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
              + +  K DL               E     +S+ TG+G E L+N I S++ +  + +
Sbjct: 346 QHVVDVLNKIDLLEGEFRDAAVNLAMREPMTVAVSALTGDGTENLLNLIDSLIVDDERPV 405

Query: 370 PFSIPSHK 377
            F +P+++
Sbjct: 406 HFDVPANE 413


>gi|288920757|ref|ZP_06415057.1| GTP-binding proten HflX [Frankia sp. EUN1f]
 gi|288347833|gb|EFC82110.1| GTP-binding proten HflX [Frankia sp. EUN1f]
          Length = 502

 Score = 36.2 bits (82), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 37/212 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + I G++NAGKSSL N L    V    A+   +  T R     D    G +  ++DT G 
Sbjct: 280 VAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTVRRATLPD----GRVFTLADTVGF 335

Query: 277 IRE-TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSK--KEI 314
           +R     IV  E  + T  EV +ADL+L                   +L EI++    E+
Sbjct: 336 VRHLPHQIV--EAFRSTLEEVVDADLVLHVVDGSAPDPMGQITAVREVLAEIDAAGVPEL 393

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                +D +   T + L     +     +S+ +G GL EL++ +   + +   ++   +P
Sbjct: 394 VVVNKVDAVDPTTLAVLRKAVPDAI--FVSARSGTGLAELVDALSERIPHPEIEMSLLVP 451

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
             +  L  +S+  R  E+ S+     G  + A
Sbjct: 452 YTRGDL--VSRIHRDGEVLSVEHTGAGTAVAA 481


>gi|241668676|ref|ZP_04756254.1| GTP-binding protein Era [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877209|ref|ZP_05249919.1| GTP-binding protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843230|gb|EET21644.1| GTP-binding protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 297

 Score = 36.2 bits (82), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           R GY I I+G  N GKS+L N + K  ++I +  P TTR  +T
Sbjct: 3   RCGY-ISIIGRPNVGKSTLLNNILKYKISITSRKPQTTRHQIT 44


>gi|228965024|ref|ZP_04126123.1| GTPase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228794660|gb|EEM42167.1| GTPase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 379

 Score = 36.2 bits (82), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 14/101 (13%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRD 256
           H     L + + +G  I ++G S  GKS+L NAL   +VA   DI           T R+
Sbjct: 180 HTGIESLQQFVSSGKTIALVGSSGVGKSTLLNALIGIEVAKTGDIREEDSKGRHTTTHRE 239

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +  +     G LV   DT G+RE       E I+ TF ++E
Sbjct: 240 LFRLP---SGSLV--IDTPGMRELQLWEGSEAIQTTFSDIE 275


>gi|209521121|ref|ZP_03269849.1| GTP-binding proten HflX [Burkholderia sp. H160]
 gi|209498431|gb|EDZ98558.1| GTP-binding proten HflX [Burkholderia sp. H160]
          Length = 395

 Score = 36.2 bits (82), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 33/162 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + ++G++NAGKS+LFNAL K        +   +  T+R V   D   E   V +SDT G 
Sbjct: 198 VSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD---EAGQVVVSDTVGF 254

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISFPKNIDFI---F 324
           IRE    +     + T  E  +ADL+L          L +I+   E+      D I    
Sbjct: 255 IRELPHQL-VAAFRATLEETIHADLLLHVVDASSAVRLDQIDQVNEVLHAIGADTIRQVL 313

Query: 325 IGTKSDL--------YSTYTEEYDHL----ISSFTGEGLEEL 354
           +  K D         ++   +EY ++    +S+ TG+GL+ L
Sbjct: 314 VFNKIDAVPELAARGHAVERDEYGNISRVFLSARTGQGLDAL 355


>gi|187918499|ref|YP_001884062.1| ribosomal biogenesis GTPase [Borrelia hermsii DAH]
 gi|119861347|gb|AAX17142.1| GTP-binding protein [Borrelia hermsii DAH]
          Length = 283

 Score = 36.2 bits (82), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           K++++G  N GKSS+ N L  K    V + PG TR++  + ++ E   + I D  GI
Sbjct: 121 KVLVIGVPNVGKSSIINLLVGKKSTSVANKPGHTRNIQILKVNEE---INIFDMPGI 174


>gi|145347979|ref|XP_001418436.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578665|gb|ABO96729.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 519

 Score = 36.2 bits (82), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 25/180 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + + G++NAGKSSL N L   +V +  D    T D  T  L+L  G  V ++DT G  + 
Sbjct: 297 VSLAGYTNAGKSSLLNKLTNAEV-LAEDKLFATLDPTTRRLELANGMTVLMTDTVGFIQK 355

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI------------FIGTK 328
                    + T  EV  + LIL + +I+S    +    +D +             +  K
Sbjct: 356 LPTQLVAAFRATLEEVLESSLILHVVDISSDLSEAHMSTVDSVLDELDAGEIPQLLVWNK 415

Query: 329 SDLYSTYTEEYD----------HLISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHK 377
            D      E  +           ++S+ TGEGL+ L +KI  I+  +   +    IP  +
Sbjct: 416 IDNVLDEEERLEIEIAAEDAGAVVVSTLTGEGLDALQDKIVEIIKKRTLSRCEMLIPYER 475


>gi|126698368|ref|YP_001087265.1| putative ATP/GTP-binding protein [Clostridium difficile 630]
 gi|255099903|ref|ZP_05328880.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-63q42]
 gi|255305792|ref|ZP_05349964.1| putative ATP/GTP-binding protein [Clostridium difficile ATCC 43255]
 gi|115249805|emb|CAJ67622.1| putative GTP-binding protein, HflX type [Clostridium difficile]
          Length = 427

 Score = 36.2 bits (82), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 38/191 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVK------ISD 273
           + ++G++NAGKS+L N L K       +     +D+L  T+D+ L   L+       + D
Sbjct: 204 VALVGYTNAGKSTLLNELIKTHKDYEQEKEVFVKDMLFATLDVTLRKALLPNKKEFLVVD 263

Query: 274 TAGI--RETDDIVEKEGIKRTFLEVENADLIL-------------------LLKE--INS 310
           T G   +   D+V  E  K T  EV+ ADLIL                   +LKE  +N 
Sbjct: 264 TVGFVSKLPHDLV--EAFKATLEEVQYADLILHVIDATNTSYELQKSTTEGVLKELGVND 321

Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
           KK I     +D + +    D+Y    E+  + IS+  G  +++L+N I+  L      + 
Sbjct: 322 KKHILVYNKVDKLEL----DIYPKSQEDIVY-ISAKQGINMDKLLNMIEIALMENTYSVS 376

Query: 371 FSIPSHKRHLY 381
             +P  +  ++
Sbjct: 377 LMLPYERGDIF 387


>gi|83319725|ref|YP_424232.1| ribosome biogenesis GTP-binding protein YsxC [Mycoplasma capricolum
           subsp. capricolum ATCC 27343]
 gi|119369215|sp|Q2SSN1|ENGB_MYCCT RecName: Full=Probable GTP-binding protein EngB
 gi|83283611|gb|ABC01543.1| GTP-binding conserved hypothetical protein [Mycoplasma capricolum
           subsp. capricolum ATCC 27343]
          Length = 196

 Score = 36.2 bits (82), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 12/121 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           I ++G SN GKSS  N+L   + +A +++ PG TR +   +++   Y +  +   G  + 
Sbjct: 25  ICLIGRSNVGKSSFINSLTNNNKLAKISNTPGKTRLLNFFEINKGEYRLVDAPGYGYAKV 84

Query: 281 DDIVEKEGIK---RTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKS 329
           DD ++ +  K     F+  +N   + LL ++  K          F K  NI  + IGTK 
Sbjct: 85  DDSIKIQFAKMMEEYFINRKNLKGVFLLLDLRHKPSNDDIMMYQFLKHYNIPVVIIGTKL 144

Query: 330 D 330
           D
Sbjct: 145 D 145


>gi|54020101|ref|YP_115739.1| GTP-binding protein Era [Mycoplasma hyopneumoniae 232]
 gi|72080495|ref|YP_287553.1| GTP-binding protein Era [Mycoplasma hyopneumoniae 7448]
 gi|53987274|gb|AAV27475.1| GTP-binding protein era homolog [Mycoplasma hyopneumoniae 232]
 gi|71913619|gb|AAZ53530.1| GTP-binding protein [Mycoplasma hyopneumoniae 7448]
          Length = 293

 Score = 36.2 bits (82), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N+L +  V+IV+    TTRD +    + +   +   DT G     
Sbjct: 9   VAIVGLPNVGKSSLINSLVEFPVSIVSLKSQTTRDAINAIYNKDNLQILFVDTPGFHMRI 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDL 331
           + +           +E  DL+L L  ++           K+I+  KN++ I + TK+DL
Sbjct: 69  NNLSNSLNYAINSTLEGIDLVLFLHPVDKPVDQNTRFLAKKIA--KNMNKIVLITKTDL 125


>gi|307729255|ref|YP_003906479.1| GTP-binding proten HflX [Burkholderia sp. CCGE1003]
 gi|307583790|gb|ADN57188.1| GTP-binding proten HflX [Burkholderia sp. CCGE1003]
          Length = 390

 Score = 36.2 bits (82), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           + ++G++NAGKS+LFNAL K        +   +  T+R V   D   E   V +SDT G 
Sbjct: 193 VSLVGYTNAGKSTLFNALTKAQAYAANQLFATLDTTSRRVYLGD---EAGQVVVSDTVGF 249

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303
           IRE    +     + T  E  +ADL+L
Sbjct: 250 IRELPHQL-VAAFRATLEETIHADLLL 275


>gi|229144649|ref|ZP_04273050.1| GTPase [Bacillus cereus BDRD-ST24]
 gi|228638781|gb|EEK95210.1| GTPase [Bacillus cereus BDRD-ST24]
          Length = 350

 Score = 36.2 bits (82), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 14/101 (13%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRD 256
           H     L + + +G  I ++G S  GKS+L NAL   DVA   DI           T R+
Sbjct: 181 HTGIDSLKQFVSSGKTIALVGSSGVGKSTLLNALIGIDVAKTGDIREEDSRGRHTTTHRE 240

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +  +     G LV   DT G+RE       E I+  F ++E
Sbjct: 241 LFQLP---SGALV--IDTPGMRELQLWEGSEAIQTAFSDIE 276


>gi|218898801|ref|YP_002447212.1| GTP-binding protein [Bacillus cereus G9842]
 gi|218543983|gb|ACK96377.1| GTP-binding protein [Bacillus cereus G9842]
          Length = 425

 Score = 36.2 bits (82), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + +     ++   T D  T  + L  GY V ++DT G  
Sbjct: 198 FQVSLIGYTNAGKSTLFNRLTEAN-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 256

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 257 QDLPTSLIAAFRSTLEEAGEADVIL 281


>gi|49473971|ref|YP_032013.1| translation-associated GTPase [Bartonella quintana str. Toulouse]
 gi|49239474|emb|CAF25826.1| GTP-binding protein [Bartonella quintana str. Toulouse]
          Length = 367

 Score = 36.2 bits (82), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           G+K  I+G  N GKS+LFNAL K   A   + P  T +  T ++ + +  + KI+  AG 
Sbjct: 2   GFKCGIVGLPNVGKSTLFNALTKTATAQAANYPFCTIEPNTGEVAVPDSRMEKIASIAGS 61

Query: 278 RE 279
           +E
Sbjct: 62  KE 63


>gi|289672428|ref|ZP_06493318.1| GTP-binding protein, HSR1-related [Pseudomonas syringae pv.
           syringae FF5]
          Length = 136

 Score = 36.2 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGI 277
           ++ ++GH+N GK+SL   L   DV+   V+  P TTR V    L ++G  LV++ DT G+
Sbjct: 11  RLAVVGHTNVGKTSLLRTLT-GDVSFGEVSHRPSTTRHVEGARLSVDGEALVELYDTPGL 69

Query: 278 RE 279
            +
Sbjct: 70  ED 71


>gi|218134734|ref|ZP_03463538.1| hypothetical protein BACPEC_02637 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990119|gb|EEC56130.1| hypothetical protein BACPEC_02637 [Bacteroides pectinophilus ATCC
           43243]
          Length = 798

 Score = 36.2 bits (82), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRE 279
           KI + G+ N GK++LFNAL   +   V + PG T  V   +  L+G+  V I+D  GI  
Sbjct: 4   KIALAGNPNCGKTTLFNALTGSN-QFVGNWPGVT--VEKKEGKLKGHKDVTITDLPGIYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303
                 +E + R +L  E  D I+
Sbjct: 61  LSPYTLEEVVARNYLINEKPDAII 84


>gi|254468868|ref|ZP_05082274.1| hypothetical protein KB13_1093 [beta proteobacterium KB13]
 gi|207087678|gb|EDZ64961.1| hypothetical protein KB13_1093 [beta proteobacterium KB13]
          Length = 280

 Score = 36.2 bits (82), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + +I+G  N GKSSL N L +K +A   D+P  T+    I +D +  L   +DT G+
Sbjct: 118 RAIIIGIPNVGKSSLINLLTQKKIAKTGDVPAVTQMQQRIIVDNDFVL---TDTPGL 171


>gi|254459937|ref|ZP_05073353.1| GTP-binding proten HflX [Rhodobacterales bacterium HTCC2083]
 gi|206676526|gb|EDZ41013.1| GTP-binding proten HflX [Rhodobacteraceae bacterium HTCC2083]
          Length = 423

 Score = 36.2 bits (82), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 108/273 (39%), Gaps = 37/273 (13%)

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF-LKND 202
           ++ M  +S + + L   W    TH+              + Q  S +  ++D L  L+  
Sbjct: 127 QVEMAALSYQRTRLVRAW----THLERQRGGLGFVGGPGETQIESDRRAIDDQLVRLRRK 182

Query: 203 ISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           +S  +    L    R       + ++G++NAGKS+LFN L   +V    D+   T D   
Sbjct: 183 LSKVVKTRALHREARAKVPFPIVALVGYTNAGKSTLFNRLTGAEV-FAKDMLFATLDPTM 241

Query: 260 IDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------- 311
             ++L +G  V +SDT G             + T  EV  ADLI+ +++I+ +       
Sbjct: 242 RAVELPDGPQVILSDTVGFISDLPTELVASFRATLEEVLAADLIVHVRDISHEGTEEQAT 301

Query: 312 ---------------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELI 355
                          K+I     ID +    K  + +      D + +SS +G G+++ +
Sbjct: 302 DVRAILTSLGVGEGAKQIEVWNKIDLLEPDDKDAVLARAARHDDVIAVSSISGYGMQDFV 361

Query: 356 NKIKSILSNKFKK----LPFSIPSHKRHLYHLS 384
             ++  L  +       LP+S    +  L+  S
Sbjct: 362 VAVEEALEGEIITETLVLPYSEGRKRAWLFERS 394


>gi|189201736|ref|XP_001937204.1| nucleolar GTP-binding protein 2 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984303|gb|EDU49791.1| nucleolar GTP-binding protein 2 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 574

 Score = 36.2 bits (82), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GKSS+ N L KK V +V  I G T+    I L    Y++   D  G
Sbjct: 295 RKQISVGMVGYPNTGKSSIINTLRKKKVCVVAPIAGETKVWQYITLMKRIYMI---DCPG 351

Query: 277 I 277
           I
Sbjct: 352 I 352


>gi|296502626|ref|YP_003664326.1| ribosome-associated GTPase [Bacillus thuringiensis BMB171]
 gi|296323678|gb|ADH06606.1| ribosome-associated GTPase [Bacillus thuringiensis BMB171]
          Length = 208

 Score = 36.2 bits (82), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 14/101 (13%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRD 256
           H     L + + +G  I ++G S  GKS+L NAL   DVA   DI           T R+
Sbjct: 39  HTGIDSLKQFVSSGKTIALVGSSGVGKSTLLNALIGIDVAKTGDIREEDSRGRHTTTHRE 98

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +  +     G LV   DT G+RE       E I+  F ++E
Sbjct: 99  LFQLP---SGALV--IDTPGMRELQLWEGSEAIQTAFSDIE 134


>gi|254565611|ref|XP_002489916.1| hypothetical protein [Pichia pastoris GS115]
 gi|238029712|emb|CAY67635.1| Hypothetical protein PAS_chr1-1_0264 [Pichia pastoris GS115]
 gi|328350327|emb|CCA36727.1| Interferon-related developmental regulator 1 [Pichia pastoris CBS
           7435]
          Length = 520

 Score = 36.2 bits (82), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 23/134 (17%)

Query: 309 NSKKEISFPKNIDFIFIG---TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           NS K++  P ++D +      T  DLYST     D+LISS T     ++  + + +L  +
Sbjct: 82  NSSKKLKEPSDLDQVKRNKEITNQDLYST-----DNLISSLTSTSRTQVSQESRELLLAQ 136

Query: 366 FKKLPFSIPSHKRHLY---HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
              L ++  S  +H Y    L Q +R      +N K        EN +L ++  G   G 
Sbjct: 137 LFNL-YTTSSRYQHTYDEFQLEQLIRVF----INAK-------TENEKLFALKCGAYMGA 184

Query: 423 VDVEQLLDIIFSKF 436
           +D E+   II  +F
Sbjct: 185 IDTEESSQIIVDEF 198


>gi|160872432|ref|ZP_02062564.1| GTP-binding protein EngB [Rickettsiella grylli]
 gi|159121231|gb|EDP46569.1| GTP-binding protein EngB [Rickettsiella grylli]
          Length = 199

 Score = 36.2 bits (82), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 9/68 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDL-------DLEGY-LV 269
           G +I  +G SN+GKSS  NA+  KK +A ++  PG T+ +    L       DL GY   
Sbjct: 26  GAEIAFIGRSNSGKSSAINAITGKKGLAKISKTPGRTQLLNFFQLNENLRLVDLPGYGFA 85

Query: 270 KISDTAGI 277
           K+SD   I
Sbjct: 86  KVSDNRKI 93


>gi|303244519|ref|ZP_07330853.1| small GTP-binding protein [Methanothermococcus okinawensis IH1]
 gi|302485067|gb|EFL47997.1| small GTP-binding protein [Methanothermococcus okinawensis IH1]
          Length = 190

 Score = 36.2 bits (82), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 27/36 (75%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +K+V++G  N GKS+L NA+  K ++ V+++ GTT+
Sbjct: 12  FKVVLIGPENCGKSALLNAIFGKYISNVSEVGGTTK 47


>gi|301155709|emb|CBW15177.1| predicted GTPase [Haemophilus parainfluenzae T3T1]
          Length = 451

 Score = 36.2 bits (82), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 30/199 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG-IRE 279
           I ++G++NAGKS+LFN + + +V     +  T    L   L ++     I +DT G +R+
Sbjct: 225 ISLVGYTNAGKSTLFNFITQANVYAADQLFATLDPTLR-RLQIQDIGTAILADTVGFVRQ 283

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI------------FIG 326
              D+V     K T  E   A L+L + +    ++I   + ++ +             + 
Sbjct: 284 LPHDLV--SAFKSTLQETVEASLLLHVIDAADARKIENIEAVNLVLEEIKADKVPALLVY 341

Query: 327 TKSDLYSTYTE--EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSI---P 374
            K DL    T   EYD         +S+ +GEGL+ L+  IK  L N+      ++    
Sbjct: 342 NKIDLLENVTPHIEYDDENKPVAVYLSAHSGEGLDLLLEAIKVRLKNEILSFTLTLLPQE 401

Query: 375 SHKRHLYHLSQTVRYLEMA 393
           S  RH  +   ++R+ +++
Sbjct: 402 SKIRHALYQLDSIRHEQIS 420


>gi|229190137|ref|ZP_04317141.1| GTPase [Bacillus cereus ATCC 10876]
 gi|228593360|gb|EEK51175.1| GTPase [Bacillus cereus ATCC 10876]
          Length = 350

 Score = 36.2 bits (82), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 14/101 (13%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRD 256
           H     L + + +G  I ++G S  GKS+L NAL   DVA   DI           T R+
Sbjct: 181 HTGIDSLKQFVSSGKTIALVGSSGVGKSTLLNALIGIDVAKTGDIREEDSRGRHTTTHRE 240

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +  +     G LV   DT G+RE       E I+  F ++E
Sbjct: 241 LFQLP---SGALV--IDTPGMRELQLWEGSEAIQTAFSDIE 276


>gi|228902206|ref|ZP_04066368.1| hypothetical protein bthur0014_33850 [Bacillus thuringiensis IBL
           4222]
 gi|228966599|ref|ZP_04127650.1| hypothetical protein bthur0004_34080 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228793121|gb|EEM40673.1| hypothetical protein bthur0004_34080 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228857441|gb|EEN01939.1| hypothetical protein bthur0014_33850 [Bacillus thuringiensis IBL
           4222]
          Length = 424

 Score = 36.2 bits (82), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN L + +     ++   T D  T  + L  GY V ++DT G  
Sbjct: 197 FQVSLIGYTNAGKSTLFNRLTEAN-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +          + T  E   AD+IL
Sbjct: 256 QDLPTSLIAAFRSTLEEAGEADVIL 280


>gi|157138211|ref|XP_001664178.1| hypothetical protein AaeL_AAEL003813 [Aedes aegypti]
 gi|108880663|gb|EAT44888.1| conserved hypothetical protein [Aedes aegypti]
          Length = 316

 Score = 36.2 bits (82), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           Y I+I+G  N GKSSL N L      KK  + V  + G TR VL      E  LV + DT
Sbjct: 138 YCIMIIGVPNVGKSSLINVLRNRHLNKKGASQVGAVAGITRSVLNKIKISEDPLVYLLDT 197

Query: 275 AGI 277
            GI
Sbjct: 198 PGI 200


>gi|327399553|ref|YP_004340422.1| ferrous iron transport protein B [Hippea maritima DSM 10411]
 gi|327182182|gb|AEA34363.1| ferrous iron transport protein B [Hippea maritima DSM 10411]
          Length = 629

 Score = 36.2 bits (82), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 7/86 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG---I 277
           K+ ++G  N GKS+LFN LA    ++  + PG T +       ++  +V I D  G   +
Sbjct: 2   KVALIGQPNCGKSTLFNQLAGYK-SLSANFPGATVEYTKGKTYIDNEVVDIFDLPGTYSL 60

Query: 278 RETDDIVEKEGIKRTFLEVENADLIL 303
              DD  EKE +K  F   EN D+I+
Sbjct: 61  SWYDD-AEKETVKALF--SENIDVIV 83


>gi|319943734|ref|ZP_08018015.1| GTP-binding protein HflX [Lautropia mirabilis ATCC 51599]
 gi|319742967|gb|EFV95373.1| GTP-binding protein HflX [Lautropia mirabilis ATCC 51599]
          Length = 393

 Score = 36.2 bits (82), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           ++ ++G++NAGKS+LFN L +   A+  D    T D LT  L L  G  V +SDT G
Sbjct: 186 RVSLIGYTNAGKSTLFNRLTRAG-ALAADQLFATLDPLTRRLGLGNGLEVVLSDTVG 241


>gi|319651594|ref|ZP_08005721.1| era protein [Bacillus sp. 2_A_57_CT2]
 gi|317396661|gb|EFV77372.1| era protein [Bacillus sp. 2_A_57_CT2]
          Length = 306

 Score = 36.2 bits (82), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 29/166 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+  N +  + +AI++D P TTR+ +   L          DT GI +  
Sbjct: 15  ISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNDAQFIFIDTPGIHKPK 74

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI---FIGTKSDLY------ 332
             +    +K     ++  D+IL +  +N+++   F +  +FI   F   ++ ++      
Sbjct: 75  HKLGDFMMKVAQNTLKEVDVILFM--VNAQE--GFGRGEEFILEKFQSVRTPIFLVINKI 130

Query: 333 ------------STYTEEYDH----LISSFTGEGLEELINKIKSIL 362
                        +Y E+Y+      IS+  G  +E L+ +IK  +
Sbjct: 131 DQVHPDELLKIIESYKEKYEFSEIIPISALEGNNVETLLGQIKEYI 176


>gi|315658272|ref|ZP_07911144.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590]
 gi|315496601|gb|EFU84924.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590]
          Length = 1163

 Score = 36.2 bits (82), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 21/157 (13%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + ++  N + I  +GH +AGKS+L N L ++D+   + +P T+   +    + EG +  I
Sbjct: 42  IKKVYLNQFTISFVGHFSAGKSTLINLLLEQDILPSSPVPTTSNTAIVSVAEEEGIIANI 101

Query: 272 SDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNID 321
           +     R +T D V++  + R  ++VE+ ++      INS K               NI 
Sbjct: 102 TGQQYTRLKTYDEVKQ--MNRLNVDVESIEIA-----INSTKFKPGFTLQDTPGVDSNIS 154

Query: 322 FIFIGTKSDLYST----YTEEYDHLISSFTGEGLEEL 354
                T+  +Y++    YT +Y+H+ S+   + L+ +
Sbjct: 155 THLSSTEQYMYTSNLIVYTVDYNHVQSALNFKFLKRM 191


>gi|313203549|ref|YP_004042206.1| ribosome biogenesis GTP-binding protein ysxc [Paludibacter
           propionicigenes WB4]
 gi|312442865|gb|ADQ79221.1| ribosome biogenesis GTP-binding protein YsxC [Paludibacter
           propionicigenes WB4]
          Length = 198

 Score = 36.2 bits (82), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 31/171 (18%)

Query: 223 VILGHSNAGKSSLFNALA-KKDVAIVTDIPGTT---------RDVLTIDLDLEGYLVKIS 272
             +G SN GKSSL N L  +KD+A+ +  PG T         ++   +DL   GY     
Sbjct: 27  AFIGRSNVGKSSLINMLCNRKDLAMTSSRPGKTLLINHFLINKNWHLVDLPGYGYA---- 82

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---IGTKS 329
            TAG +  D +  ++ I+   L  E    + LL  I+ + E   P+ ID  F   +G   
Sbjct: 83  -TAGKKMRDQL--QDIIESYILNREQLTCLFLL--IDCRHE---PQKIDLEFMEWLGENG 134

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKR 378
             +S    + D L  +     ++   +K    LS ++++LP  F   S KR
Sbjct: 135 VPFSIVFTKLDKLTHAKGKSNVQAYKDK----LSEQWEELPPIFLTSSEKR 181


>gi|294782272|ref|ZP_06747598.1| ribosome biogenesis GTPase YqeH [Fusobacterium sp. 1_1_41FAA]
 gi|294480913|gb|EFG28688.1| ribosome biogenesis GTPase YqeH [Fusobacterium sp. 1_1_41FAA]
          Length = 366

 Score = 36.2 bits (82), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           K+     +G   +++G +N GKSS+ N L  K +A V+  PGTT
Sbjct: 151 KIKHFYPDGVNAMVIGVTNVGKSSVINRLLGKRIATVSKYPGTT 194


>gi|228920740|ref|ZP_04084080.1| GTPase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228838851|gb|EEM84152.1| GTPase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 350

 Score = 36.2 bits (82), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 14/101 (13%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRD 256
           H     L + + +G  I ++G S  GKS+L NAL   DVA   DI           T R+
Sbjct: 181 HTGIDSLKQFVSSGKTIALVGSSGVGKSTLLNALIGIDVAKTGDIREEDSRGRHTTTHRE 240

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +  +     G LV   DT G+RE       E I+  F ++E
Sbjct: 241 LFQLP---SGALV--IDTPGMRELQLWEGSEAIQTAFSDIE 276


>gi|212639583|ref|YP_002316103.1| ribosomal biogenesis GTPase [Anoxybacillus flavithermus WK1]
 gi|212561063|gb|ACJ34118.1| Predicted GTPase [Anoxybacillus flavithermus WK1]
          Length = 284

 Score = 36.2 bits (82), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              + +I+G  N GKS+L N LA K +A   D PG T+    I +   G  +++ DT GI
Sbjct: 123 RAMRALIVGIPNVGKSTLINRLAGKHIAKTGDTPGVTKAQQWIKV---GKELELLDTPGI 179


>gi|159028083|emb|CAO87160.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 774

 Score = 36.2 bits (82), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 27/167 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G+ N GK++LFNAL   +     + PG T D       + G  + + D  G+   D
Sbjct: 6   IALIGNPNCGKTTLFNALTGANQR-TGNWPGVTVDRKEGRFQVNGKDITLVDLPGVYSLD 64

Query: 282 DIVEK------EGIKRTFLEVENADLILLLKEINSKK----------EISFPKNIDFIF- 324
             VE+      E + R +L    ADL++ + + ++ +          E+  P  I     
Sbjct: 65  --VEEGETGMDELVARDYLLSGEADLVINIVDASNLERNLYLTTQIMEMRLPMLIALNMM 122

Query: 325 -------IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                  I     L S   +     IS+  GEG+ EL  KI  ++SN
Sbjct: 123 DVAKTRGIVVNPQLLSVRMDAIVVAISAVKGEGIGELKQKIGELVSN 169


>gi|89068178|ref|ZP_01155588.1| GTP-binding protein HflX [Oceanicola granulosus HTCC2516]
 gi|89046095|gb|EAR52153.1| GTP-binding protein HflX [Oceanicola granulosus HTCC2516]
          Length = 430

 Score = 36.2 bits (82), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 6/108 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN L   +V +  D+   T D     ++L  G  V +SDT G    
Sbjct: 212 VALVGYTNAGKSTLFNRLTGAEV-MAKDMLFATLDPTMRKVELPSGQEVILSDTVGF--I 268

Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
            D+  +     + T  EV +ADLIL ++++   +     +++  I  G
Sbjct: 269 SDLPTELVAAFRATLEEVLDADLILHVRDVAHAETEEQAEDVRTILSG 316


>gi|119357534|ref|YP_912178.1| GTP-binding protein, HSR1-related [Chlorobium phaeobacteroides DSM
           266]
 gi|119354883|gb|ABL65754.1| GTP-binding protein HflX [Chlorobium phaeobacteroides DSM 266]
          Length = 434

 Score = 36.2 bits (82), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG-IR 278
           ++ ++G++NAGKS+L N L  +  A   +    T D  T  L+L+   LV +SDT G IR
Sbjct: 203 RVALVGYTNAGKSTLMNILCPEAEAFAENRLFATLDTKTRRLELKINKLVLLSDTVGFIR 262

Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303
           +    +  E  K T  EV  AD +L
Sbjct: 263 KLPHHL-VESFKSTLDEVLQADFLL 286


>gi|228952414|ref|ZP_04114498.1| GTPase [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|229069581|ref|ZP_04202870.1| GTPase [Bacillus cereus F65185]
 gi|229079213|ref|ZP_04211760.1| GTPase [Bacillus cereus Rock4-2]
 gi|229178438|ref|ZP_04305805.1| GTPase [Bacillus cereus 172560W]
 gi|228605025|gb|EEK62479.1| GTPase [Bacillus cereus 172560W]
 gi|228704060|gb|EEL56499.1| GTPase [Bacillus cereus Rock4-2]
 gi|228713720|gb|EEL65606.1| GTPase [Bacillus cereus F65185]
 gi|228807263|gb|EEM53798.1| GTPase [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 350

 Score = 36.2 bits (82), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 14/101 (13%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI---------PGTTRD 256
           H     L + + +G  I ++G S  GKS+L NAL   DVA   DI           T R+
Sbjct: 181 HTGIDSLKQFVSSGKTIALVGSSGVGKSTLLNALIGIDVAKTGDIREEDSRGRHTTTHRE 240

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +  +     G LV   DT G+RE       E I+  F ++E
Sbjct: 241 LFQLP---SGALV--IDTPGMRELQLWEGSEAIQTAFSDIE 276


>gi|160902430|ref|YP_001568011.1| ferrous iron transport protein B [Petrotoga mobilis SJ95]
 gi|160360074|gb|ABX31688.1| ferrous iron transport protein B [Petrotoga mobilis SJ95]
          Length = 669

 Score = 36.2 bits (82), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E +    +I I+G+ N GK+SLFN L       V + PG T +    +   +G   K+ D
Sbjct: 11  ETVNKEAEISIIGNPNVGKTSLFNLLTGTK-QYVANWPGVTVEKKVGNFKYKGKTFKLVD 69

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
             G+       E E + + +L   ++++++++ +
Sbjct: 70  LPGVYTLSAKSEDERVAKDYLISNSSEIVIVVAD 103


Searching..................................................done


Results from round 2




>gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040486|gb|ACT57282.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 440

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 440/440 (100%), Positives = 440/440 (100%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI
Sbjct: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN
Sbjct: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE
Sbjct: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA
Sbjct: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD
Sbjct: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS
Sbjct: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
           ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT
Sbjct: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           GCVDVEQLLDIIFSKFCIGK
Sbjct: 421 GCVDVEQLLDIIFSKFCIGK 440


>gi|315122032|ref|YP_004062521.1| tRNA modification GTPase TrmE [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495434|gb|ADR52033.1| tRNA modification GTPase TrmE [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 440

 Score =  541 bits (1395), Expect = e-152,   Method: Composition-based stats.
 Identities = 370/440 (84%), Positives = 403/440 (91%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN+EK+TIFA+S+G LPSAIS+IRLSG SCFQVCEFICKKK P PR ASLR+F+G DGRI
Sbjct: 1   MNYEKKTIFALSSGILPSAISVIRLSGSSCFQVCEFICKKKNPLPRVASLRFFYGFDGRI 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LDKGLLI+FPSP+SFTGED AEFHVHGGI+VV+GILEELAKMPNLR ANPGEFSRRAFEN
Sbjct: 61  LDKGLLILFPSPKSFTGEDCAEFHVHGGISVVDGILEELAKMPNLRRANPGEFSRRAFEN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDLLEAESLADLISSETEMQRRLSMEGMSG+LS+LY  WI+KLT++RSFIEADLDFS+
Sbjct: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGKLSNLYNGWINKLTYVRSFIEADLDFSD 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EEDVQ FSSKE+ NDIL LK++ISSHISQGKLGEIIRNGYKIVILG+SNAGKSSL NALA
Sbjct: 181 EEDVQKFSSKEIWNDILLLKDEISSHISQGKLGEIIRNGYKIVILGNSNAGKSSLLNALA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K+DVAIVTD+PGTTRDV+TIDLDL GYLVKISDTAGIRET+ IVEKEGIKR F EVENAD
Sbjct: 241 KRDVAIVTDVPGTTRDVITIDLDLGGYLVKISDTAGIRETNSIVEKEGIKRAFREVENAD 300

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           LILLL+EI+SK EI FPKNI FIFIGTKSDLY    +EYDHLISS TGEGLEELINKIK+
Sbjct: 301 LILLLEEISSKTEILFPKNIAFIFIGTKSDLYDNSFKEYDHLISSVTGEGLEELINKIKN 360

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
           I+SNKFK     IPSHKRHL HLSQ V+YLE AS  EKDCGLDIIAENLRLAS+SLG+IT
Sbjct: 361 IISNKFKTNSMFIPSHKRHLDHLSQAVKYLEDASSGEKDCGLDIIAENLRLASISLGRIT 420

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G VDVEQLLDIIFSKFCIGK
Sbjct: 421 GNVDVEQLLDIIFSKFCIGK 440


>gi|300984421|ref|ZP_07176985.1| tRNA modification GTPase TrmE [Escherichia coli MS 45-1]
 gi|300408377|gb|EFJ91915.1| tRNA modification GTPase TrmE [Escherichia coli MS 45-1]
          Length = 479

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 249/458 (54%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +
Sbjct: 25  IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSV 83

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 84  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 143

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 144 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 203

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 204 -EEIDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 262

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 263 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 322

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 323 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 382

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+            
Sbjct: 383 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 441

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 442 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 479


>gi|300940893|ref|ZP_07155419.1| tRNA modification GTPase TrmE [Escherichia coli MS 21-1]
 gi|300454323|gb|EFK17816.1| tRNA modification GTPase TrmE [Escherichia coli MS 21-1]
          Length = 478

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 249/458 (54%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +
Sbjct: 24  IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSV 82

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 83  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 142

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 143 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 202

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 203 -EEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 261

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 262 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 321

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 322 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 381

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+            
Sbjct: 382 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 440

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 441 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 478


>gi|301047527|ref|ZP_07194602.1| tRNA modification GTPase TrmE [Escherichia coli MS 185-1]
 gi|300300576|gb|EFJ56961.1| tRNA modification GTPase TrmE [Escherichia coli MS 185-1]
 gi|315292850|gb|EFU52202.1| tRNA modification GTPase TrmE [Escherichia coli MS 153-1]
          Length = 477

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 249/458 (54%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +
Sbjct: 23  IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSV 81

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 82  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 141

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 142 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 201

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 202 -EEIDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 260

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 261 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 320

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 321 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 380

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+            
Sbjct: 381 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 439

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 440 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 477


>gi|161505627|ref|YP_001572739.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866974|gb|ABX23597.1| hypothetical protein SARI_03803 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 472

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 161/458 (35%), Positives = 253/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG +  +V + +   K P PR A    F   DG  
Sbjct: 19  MSH-NDTIVAQATPPGRGGVGILRISGLNAKKVAQTVLG-KLPKPRYADYLPFKDADGAT 76

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 77  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIARPGEFSERAFLN 136

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 137 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 196

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 197 -EEIDFLSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 255

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 256 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAGLRDASDEVERIGIERAWQEIEQAD 315

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 316 RVLFMVDGTTTDAVDPGDIWPDFIARLPKNLPITVVRNKADITGEMLGISEVNGHSLVRL 375

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE            
Sbjct: 376 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 434

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 435 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 472


>gi|300932339|ref|ZP_07147606.1| tRNA modification GTPase TrmE [Escherichia coli MS 187-1]
 gi|300459909|gb|EFK23402.1| tRNA modification GTPase TrmE [Escherichia coli MS 187-1]
          Length = 474

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 161/458 (35%), Positives = 249/458 (54%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +
Sbjct: 20  IMSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG-KLPKPRYADYLPFKDADGSV 78

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 79  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 138

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 139 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 198

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 199 -EEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 257

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 258 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 317

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 318 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 377

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG+E L N +K  +      +     + +RHL  L Q   +L+            
Sbjct: 378 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 436

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 437 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 474


>gi|300983699|ref|ZP_07176709.1| tRNA modification GTPase TrmE [Escherichia coli MS 200-1]
 gi|300306872|gb|EFJ61392.1| tRNA modification GTPase TrmE [Escherichia coli MS 200-1]
 gi|315285497|gb|EFU44942.1| tRNA modification GTPase TrmE [Escherichia coli MS 110-3]
          Length = 475

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 249/458 (54%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +
Sbjct: 21  IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSV 79

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 80  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 139

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 140 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 199

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 200 -EEIDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 258

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 259 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 318

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 319 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 378

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+            
Sbjct: 379 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 437

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 438 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 475


>gi|205422290|sp|A9MJT6|MNME_SALAR RecName: Full=tRNA modification GTPase mnmE
          Length = 454

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 161/458 (35%), Positives = 253/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG +  +V + +   K P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLNAKKVAQTVLG-KLPKPRYADYLPFKDADGAT 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPGDIWPDFIARLPKNLPITVVRNKADITGEMLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE            
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|258626075|ref|ZP_05720926.1| tRNA modification GTPase [Vibrio mimicus VM603]
 gi|258581601|gb|EEW06499.1| tRNA modification GTPase [Vibrio mimicus VM603]
          Length = 464

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 159/457 (34%), Positives = 247/457 (54%), Gaps = 21/457 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
               +TI A +T      + IIR+SGP   QV + +  +    PR A    F   +G+ L
Sbjct: 11  TMTTDTIVAQATAPGRGGVGIIRVSGPLAAQVAQTVTGRTL-RPRYAEYLPFTDENGQQL 69

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N 
Sbjct: 70  DQGIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLND 129

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E 
Sbjct: 130 KMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE- 188

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E++   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ 
Sbjct: 189 EEIDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSG 248

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           K+ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD 
Sbjct: 249 KESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADR 308

Query: 302 ILLLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLIS 344
           +L + +         +EI        P+NI    I  K+D            +     +S
Sbjct: 309 VLFMVDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLS 368

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TG+G++ L   +K  +            + +RHL  L +   +L++     E     +
Sbjct: 369 AKTGQGVDALRQHLKECM-GFAGNQEGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGE 427

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 428 ILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464


>gi|15833895|ref|NP_312668.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. Sakai]
 gi|168748574|ref|ZP_02773596.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753599|ref|ZP_02778606.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4401]
 gi|168759896|ref|ZP_02784903.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766197|ref|ZP_02791204.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4486]
 gi|168772255|ref|ZP_02797262.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779932|ref|ZP_02804939.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786540|ref|ZP_02811547.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC869]
 gi|168798745|ref|ZP_02823752.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC508]
 gi|195936329|ref|ZP_03081711.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808040|ref|ZP_03250377.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814185|ref|ZP_03255514.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820072|ref|ZP_03260392.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395938|ref|YP_002273234.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4115]
 gi|217324903|ref|ZP_03440987.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795709|ref|YP_003080546.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225860|ref|ZP_05940141.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261258905|ref|ZP_05951438.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia
           coli O157:H7 str. FRIK966]
 gi|291285125|ref|YP_003501943.1| tRNA modification GTPase trmE [Escherichia coli O55:H7 str. CB9615]
 gi|21363001|sp|Q8XB41|MNME_ECO57 RecName: Full=tRNA modification GTPase mnmE
 gi|254811478|sp|B5YXB0|MNME_ECO5E RecName: Full=tRNA modification GTPase mnmE
 gi|13364116|dbj|BAB38064.1| GTP-binding protein in thiophene and furan oxidation [Escherichia
           coli O157:H7 str. Sakai]
 gi|187771576|gb|EDU35420.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016998|gb|EDU55120.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4113]
 gi|189002302|gb|EDU71288.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359120|gb|EDU77539.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364418|gb|EDU82837.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369584|gb|EDU88000.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373460|gb|EDU91876.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC869]
 gi|189378836|gb|EDU97252.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC508]
 gi|208727841|gb|EDZ77442.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735462|gb|EDZ84149.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740195|gb|EDZ87877.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157338|gb|ACI34771.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           EC4115]
 gi|209754068|gb|ACI75341.1| hypothetical protein ECs4641 [Escherichia coli]
 gi|209754070|gb|ACI75342.1| hypothetical protein ECs4641 [Escherichia coli]
 gi|209754072|gb|ACI75343.1| hypothetical protein ECs4641 [Escherichia coli]
 gi|209754074|gb|ACI75344.1| hypothetical protein ECs4641 [Escherichia coli]
 gi|209754076|gb|ACI75345.1| hypothetical protein ECs4641 [Escherichia coli]
 gi|217321124|gb|EEC29548.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           TW14588]
 gi|254595109|gb|ACT74470.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia
           coli O157:H7 str. TW14359]
 gi|290764998|gb|ADD58959.1| tRNA modification GTPase trmE [Escherichia coli O55:H7 str. CB9615]
 gi|320191194|gb|EFW65844.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
           O157:H7 str. EC1212]
 gi|320639432|gb|EFX09047.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. G5101]
 gi|320644875|gb|EFX13911.1| tRNA modification GTPase TrmE [Escherichia coli O157:H- str.
           493-89]
 gi|320650139|gb|EFX18635.1| tRNA modification GTPase TrmE [Escherichia coli O157:H- str. H
           2687]
 gi|320655487|gb|EFX23422.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661113|gb|EFX28549.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666239|gb|EFX33245.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326337245|gb|EGD61080.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
           O157:H7 str. 1044]
 gi|326341616|gb|EGD65405.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
           O157:H7 str. 1125]
          Length = 454

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 KTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|301160376|emb|CBW19901.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
          Length = 458

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 5   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDVDGSA 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 63  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 123 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 183 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 242 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 301

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 302 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 361

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE            
Sbjct: 362 SARTGEGIDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 458


>gi|324012741|gb|EGB81960.1| tRNA modification GTPase TrmE [Escherichia coli MS 60-1]
          Length = 481

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 249/458 (54%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +
Sbjct: 27  IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSV 85

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 86  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 145

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 146 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 205

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 206 -EEIDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 264

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 265 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 324

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 325 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 384

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+            
Sbjct: 385 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 443

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 444 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 481


>gi|315296896|gb|EFU56184.1| tRNA modification GTPase TrmE [Escherichia coli MS 16-3]
          Length = 475

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 249/458 (54%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +
Sbjct: 21  IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSV 79

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 80  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 139

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 140 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 199

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 200 -EEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 258

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 259 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 318

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 319 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 378

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+            
Sbjct: 379 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 437

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 438 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 475


>gi|161616963|ref|YP_001590928.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|194447879|ref|YP_002047875.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197250655|ref|YP_002148780.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|198243069|ref|YP_002217792.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200387122|ref|ZP_03213734.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205359076|ref|ZP_02666996.2| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|161366327|gb|ABX70095.1| hypothetical protein SPAB_04784 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406183|gb|ACF66402.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197214358|gb|ACH51755.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197937585|gb|ACH74918.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199604220|gb|EDZ02765.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205338960|gb|EDZ25724.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|322647617|gb|EFY44104.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
          Length = 467

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 14  MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDVDGSA 71

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 72  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 131

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 132 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 191

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 192 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 250

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 251 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 310

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 311 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 370

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE            
Sbjct: 371 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 429

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 430 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 467


>gi|16767128|ref|NP_462743.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|21363010|sp|Q8ZKY3|MNME_SALTY RecName: Full=tRNA modification GTPase mnmE
 gi|16422417|gb|AAL22702.1| GTPase for tRNA modification and thiophene and furan oxidation
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|261248984|emb|CBG26841.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996130|gb|ACY91015.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|312914972|dbj|BAJ38946.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225561|gb|EFX50616.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323132204|gb|ADX19634.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332990693|gb|AEF09676.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 454

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE            
Sbjct: 358 SARTGEGIDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|324018442|gb|EGB87661.1| tRNA modification GTPase TrmE [Escherichia coli MS 117-3]
          Length = 479

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 249/458 (54%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +
Sbjct: 25  IMSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG-KLPKPRYADYLPFKDADGSV 83

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 84  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 143

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 144 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 203

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 204 -EEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 262

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 263 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 322

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 323 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 382

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+            
Sbjct: 383 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 441

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 442 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 479


>gi|300947531|ref|ZP_07161709.1| tRNA modification GTPase TrmE [Escherichia coli MS 116-1]
 gi|300452880|gb|EFK16500.1| tRNA modification GTPase TrmE [Escherichia coli MS 116-1]
          Length = 460

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 249/458 (54%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +
Sbjct: 6   IMSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG-KLPKPRYADYLPFKDADGSV 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 65  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 124

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 125 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 184

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 185 -EEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 243

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 244 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 303

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 304 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 363

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+            
Sbjct: 364 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 422

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 423 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 460


>gi|157163187|ref|YP_001460505.1| tRNA modification GTPase TrmE [Escherichia coli HS]
 gi|194435686|ref|ZP_03067789.1| tRNA modification GTPase TrmE [Escherichia coli 101-1]
 gi|218697429|ref|YP_002405096.1| tRNA modification GTPase TrmE [Escherichia coli 55989]
 gi|253775659|ref|YP_003038490.1| tRNA modification GTPase TrmE [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163658|ref|YP_003046766.1| tRNA modification GTPase TrmE [Escherichia coli B str. REL606]
 gi|297520056|ref|ZP_06938442.1| tRNA modification GTPase TrmE [Escherichia coli OP50]
 gi|307313225|ref|ZP_07592850.1| tRNA modification GTPase TrmE [Escherichia coli W]
 gi|309795744|ref|ZP_07690159.1| tRNA modification GTPase TrmE [Escherichia coli MS 145-7]
 gi|312972002|ref|ZP_07786176.1| tRNA modification GTPase TrmE [Escherichia coli 1827-70]
 gi|331655368|ref|ZP_08356367.1| tRNA modification GTPase TrmE [Escherichia coli M718]
 gi|331670551|ref|ZP_08371390.1| tRNA modification GTPase TrmE [Escherichia coli TA271]
 gi|166991108|sp|A8A6G8|MNME_ECOHS RecName: Full=tRNA modification GTPase mnmE
 gi|254811477|sp|B7L851|MNME_ECO55 RecName: Full=tRNA modification GTPase mnmE
 gi|157068867|gb|ABV08122.1| tRNA modification GTPase TrmE [Escherichia coli HS]
 gi|194425229|gb|EDX41213.1| tRNA modification GTPase TrmE [Escherichia coli 101-1]
 gi|218354161|emb|CAV00765.1| GTPase [Escherichia coli 55989]
 gi|242379246|emb|CAQ34051.1| GTP-binding protein with a role in modification of tRNA, subunit of
           complex involved in modification of tRNA [Escherichia
           coli BL21(DE3)]
 gi|253326703|gb|ACT31305.1| tRNA modification GTPase TrmE [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975559|gb|ACT41230.1| tRNA modification GTPase [Escherichia coli B str. REL606]
 gi|253979715|gb|ACT45385.1| tRNA modification GTPase [Escherichia coli BL21(DE3)]
 gi|306906908|gb|EFN37417.1| tRNA modification GTPase TrmE [Escherichia coli W]
 gi|308120623|gb|EFO57885.1| tRNA modification GTPase TrmE [Escherichia coli MS 145-7]
 gi|310334379|gb|EFQ00584.1| tRNA modification GTPase TrmE [Escherichia coli 1827-70]
 gi|315063012|gb|ADT77339.1| GTPase [Escherichia coli W]
 gi|320201266|gb|EFW75847.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
           EC4100B]
 gi|323380926|gb|ADX53194.1| tRNA modification GTPase TrmE [Escherichia coli KO11]
 gi|323939230|gb|EGB35443.1| tRNA modification GTPase TrmE [Escherichia coli E482]
 gi|323959772|gb|EGB55422.1| tRNA modification GTPase TrmE [Escherichia coli H489]
 gi|323971184|gb|EGB66430.1| tRNA modification GTPase TrmE [Escherichia coli TA007]
 gi|331047383|gb|EGI19461.1| tRNA modification GTPase TrmE [Escherichia coli M718]
 gi|331062613|gb|EGI34533.1| tRNA modification GTPase TrmE [Escherichia coli TA271]
          Length = 454

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 161/456 (35%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG+E L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|300956287|ref|ZP_07168590.1| tRNA modification GTPase TrmE [Escherichia coli MS 175-1]
 gi|300316885|gb|EFJ66669.1| tRNA modification GTPase TrmE [Escherichia coli MS 175-1]
          Length = 462

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 249/458 (54%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +
Sbjct: 8   IMSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG-KLPKPRYADYLPFKDADGSV 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 67  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 127 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 187 -EEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 246 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 305

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 306 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 365

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+            
Sbjct: 366 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 424

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 425 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 462


>gi|24114984|ref|NP_709494.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 301]
 gi|30065014|ref|NP_839185.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 2457T]
 gi|110807604|ref|YP_691124.1| tRNA modification GTPase TrmE [Shigella flexneri 5 str. 8401]
 gi|46577445|sp|Q83PL3|MNME_SHIFL RecName: Full=tRNA modification GTPase mnmE
 gi|123146522|sp|Q0SYP6|MNME_SHIF8 RecName: Full=tRNA modification GTPase mnmE
 gi|24054236|gb|AAN45201.1| GTP-binding protein in thiophene and furan oxidation [Shigella
           flexneri 2a str. 301]
 gi|30043275|gb|AAP18996.1| GTP-binding protein in thiophene and furan oxidation [Shigella
           flexneri 2a str. 2457T]
 gi|110617152|gb|ABF05819.1| GTP-binding protein in thiophene and furan oxidation [Shigella
           flexneri 5 str. 8401]
 gi|281603067|gb|ADA76051.1| tRNA modification GTPase trmE [Shigella flexneri 2002017]
 gi|313647714|gb|EFS12162.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 2457T]
 gi|332750527|gb|EGJ80936.1| tRNA modification GTPase TrmE [Shigella flexneri K-671]
 gi|332750698|gb|EGJ81106.1| tRNA modification GTPase TrmE [Shigella flexneri 4343-70]
 gi|332751721|gb|EGJ82119.1| tRNA modification GTPase TrmE [Shigella flexneri 2747-71]
 gi|332764077|gb|EGJ94314.1| tRNA modification GTPase TrmE [Shigella flexneri 2930-71]
 gi|332996037|gb|EGK15664.1| tRNA modification GTPase TrmE [Shigella flexneri VA-6]
 gi|332997083|gb|EGK16699.1| tRNA modification GTPase TrmE [Shigella flexneri K-218]
 gi|332997872|gb|EGK17480.1| tRNA modification GTPase TrmE [Shigella flexneri K-272]
 gi|333013208|gb|EGK32581.1| tRNA modification GTPase TrmE [Shigella flexneri K-304]
 gi|333013667|gb|EGK33032.1| tRNA modification GTPase TrmE [Shigella flexneri K-227]
          Length = 454

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|15804300|ref|NP_290339.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 EDL933]
 gi|12518545|gb|AAG58903.1|AE005601_9 GTP-binding protein in thiophene and furan oxidation [Escherichia
           coli O157:H7 str. EDL933]
          Length = 454

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 159/456 (34%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGEB  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEBVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 KTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|324008034|gb|EGB77253.1| tRNA modification GTPase TrmE [Escherichia coli MS 57-2]
          Length = 481

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 249/458 (54%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +
Sbjct: 27  IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSV 85

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 86  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 145

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 146 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 205

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 206 -EEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 264

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 265 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 324

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 325 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 384

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+            
Sbjct: 385 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 443

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 444 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 481


>gi|168464825|ref|ZP_02698717.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195632244|gb|EDX50728.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 454

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE            
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKTQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|16762483|ref|NP_458100.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143971|ref|NP_807313.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052691|ref|ZP_03345569.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213424947|ref|ZP_03357697.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213580794|ref|ZP_03362620.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213865392|ref|ZP_03387511.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|21363008|sp|Q8Z2N8|MNME_SALTI RecName: Full=tRNA modification GTPase mnmE
 gi|25319370|pir||AE0957 thiophene and furan oxidation protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504788|emb|CAD03153.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139607|gb|AAO71173.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 454

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 253/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE            
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAANHLEQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|193063795|ref|ZP_03044882.1| tRNA modification GTPase TrmE [Escherichia coli E22]
 gi|194428063|ref|ZP_03060607.1| tRNA modification GTPase TrmE [Escherichia coli B171]
 gi|260846509|ref|YP_003224287.1| GTPase TrmE [Escherichia coli O103:H2 str. 12009]
 gi|293464030|ref|ZP_06664444.1| tRNA modification GTPase TrmE [Escherichia coli B088]
 gi|300815046|ref|ZP_07095271.1| tRNA modification GTPase TrmE [Escherichia coli MS 107-1]
 gi|192930510|gb|EDV83117.1| tRNA modification GTPase TrmE [Escherichia coli E22]
 gi|194413821|gb|EDX30099.1| tRNA modification GTPase TrmE [Escherichia coli B171]
 gi|257761656|dbj|BAI33153.1| GTPase TrmE [Escherichia coli O103:H2 str. 12009]
 gi|291321662|gb|EFE61098.1| tRNA modification GTPase TrmE [Escherichia coli B088]
 gi|300531938|gb|EFK53000.1| tRNA modification GTPase TrmE [Escherichia coli MS 107-1]
 gi|323161042|gb|EFZ46961.1| tRNA modification GTPase TrmE [Escherichia coli E128010]
 gi|323182501|gb|EFZ67905.1| tRNA modification GTPase TrmE [Escherichia coli 1357]
 gi|324115941|gb|EGC09867.1| tRNA modification GTPase TrmE [Escherichia coli E1167]
          Length = 454

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 159/456 (34%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  ++ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIAELDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|204928462|ref|ZP_03219661.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204321895|gb|EDZ07093.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 454

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 253/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +  +   +     + +RHL  L++   +LE            
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFE-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|62182330|ref|YP_218747.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|168234430|ref|ZP_02659488.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168235485|ref|ZP_02660543.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168260372|ref|ZP_02682345.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194444972|ref|YP_002043092.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194473009|ref|ZP_03078993.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194736496|ref|YP_002116786.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197262577|ref|ZP_03162651.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|207859069|ref|YP_002245720.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|75479674|sp|Q57HZ6|MNME_SALCH RecName: Full=tRNA modification GTPase mnmE
 gi|205422295|sp|A9MX84|MNME_SALPB RecName: Full=tRNA modification GTPase mnmE
 gi|254811491|sp|B5QUQ5|MNME_SALEP RecName: Full=tRNA modification GTPase mnmE
 gi|254811493|sp|B4SYB2|MNME_SALNS RecName: Full=tRNA modification GTPase mnmE
 gi|254811496|sp|B4TN11|MNME_SALSV RecName: Full=tRNA modification GTPase mnmE
 gi|62129963|gb|AAX67666.1| GTPase for tRNA modification and thiophene and furan oxidation
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194403635|gb|ACF63857.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194459373|gb|EDX48212.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194711998|gb|ACF91219.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197240832|gb|EDY23452.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197291436|gb|EDY30788.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|205331633|gb|EDZ18397.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205350463|gb|EDZ37094.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206710872|emb|CAR35236.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|322617245|gb|EFY14150.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619067|gb|EFY15953.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625134|gb|EFY21962.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630185|gb|EFY26956.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634389|gb|EFY31123.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635274|gb|EFY31989.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642902|gb|EFY39486.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322650576|gb|EFY46983.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656398|gb|EFY52690.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661578|gb|EFY57801.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661659|gb|EFY57878.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668227|gb|EFY64385.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672843|gb|EFY68951.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322674975|gb|EFY71061.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683665|gb|EFY79678.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687741|gb|EFY83710.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322716821|gb|EFZ08392.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323192044|gb|EFZ77279.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200526|gb|EFZ85604.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204951|gb|EFZ89936.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206694|gb|EFZ91651.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211767|gb|EFZ96600.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218629|gb|EGA03336.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220030|gb|EGA04500.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224800|gb|EGA09065.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232491|gb|EGA16593.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235266|gb|EGA19351.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323241054|gb|EGA25091.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323241396|gb|EGA25428.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248627|gb|EGA32557.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252074|gb|EGA35934.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258622|gb|EGA42285.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262347|gb|EGA45905.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323268183|gb|EGA51659.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270597|gb|EGA54042.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326625578|gb|EGE31923.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 454

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE            
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|296105488|ref|YP_003615634.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059947|gb|ADF64685.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 454

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 251/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDSDGTP 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNDVMTDLEAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG+++L N +K  +      +     + +RHL  L +  R+LE            
Sbjct: 358 SARTGEGVDDLRNHLKQSMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|16131574|ref|NP_418162.1| GTPase [Escherichia coli str. K-12 substr. MG1655]
 gi|82546029|ref|YP_409976.1| tRNA modification GTPase TrmE [Shigella boydii Sb227]
 gi|89110306|ref|AP_004086.1| GTPase [Escherichia coli str. K-12 substr. W3110]
 gi|170022257|ref|YP_001727211.1| tRNA modification GTPase TrmE [Escherichia coli ATCC 8739]
 gi|170083208|ref|YP_001732528.1| GTPase [Escherichia coli str. K-12 substr. DH10B]
 gi|187732019|ref|YP_001882460.1| tRNA modification GTPase TrmE [Shigella boydii CDC 3083-94]
 gi|188493740|ref|ZP_03001010.1| tRNA modification GTPase TrmE [Escherichia coli 53638]
 gi|209921183|ref|YP_002295267.1| tRNA modification GTPase TrmE [Escherichia coli SE11]
 gi|218556273|ref|YP_002389187.1| tRNA modification GTPase TrmE [Escherichia coli IAI1]
 gi|238902797|ref|YP_002928593.1| GTPase [Escherichia coli BW2952]
 gi|254038925|ref|ZP_04872977.1| tRNA modification GTPase TrmE [Escherichia sp. 1_1_43]
 gi|256021275|ref|ZP_05435140.1| tRNA modification GTPase TrmE [Shigella sp. D9]
 gi|256025562|ref|ZP_05439427.1| tRNA modification GTPase TrmE [Escherichia sp. 4_1_40B]
 gi|293413161|ref|ZP_06655827.1| tRNA modification GTPase TrmE [Escherichia coli B354]
 gi|300917463|ref|ZP_07134124.1| tRNA modification GTPase TrmE [Escherichia coli MS 115-1]
 gi|301020896|ref|ZP_07184953.1| tRNA modification GTPase TrmE [Escherichia coli MS 69-1]
 gi|301644379|ref|ZP_07244380.1| tRNA modification GTPase TrmE [Escherichia coli MS 146-1]
 gi|307140407|ref|ZP_07499763.1| tRNA modification GTPase TrmE [Escherichia coli H736]
 gi|331644431|ref|ZP_08345560.1| tRNA modification GTPase TrmE [Escherichia coli H736]
 gi|331675198|ref|ZP_08375951.1| tRNA modification GTPase TrmE [Escherichia coli TA280]
 gi|331685431|ref|ZP_08386017.1| tRNA modification GTPase TrmE [Escherichia coli H299]
 gi|332282504|ref|ZP_08394917.1| tRNA modification GTPase TrmE [Shigella sp. D9]
 gi|2851487|sp|P25522|MNME_ECOLI RecName: Full=tRNA modification GTPase mnmE
 gi|123558283|sp|Q31UW0|MNME_SHIBS RecName: Full=tRNA modification GTPase mnmE
 gi|189036202|sp|B1IX32|MNME_ECOLC RecName: Full=tRNA modification GTPase mnmE
 gi|205829137|sp|B1X9T5|MNME_ECODH RecName: Full=tRNA modification GTPase mnmE
 gi|254811481|sp|B7M559|MNME_ECO8A RecName: Full=tRNA modification GTPase mnmE
 gi|254811483|sp|B6I3T9|MNME_ECOSE RecName: Full=tRNA modification GTPase mnmE
 gi|254811497|sp|B2TUS2|MNME_SHIB3 RecName: Full=tRNA modification GTPase mnmE
 gi|259495841|sp|C4ZYY4|MNME_ECOBW RecName: Full=tRNA modification GTPase mnmE
 gi|2367268|gb|AAC76729.1| GTPase [Escherichia coli str. K-12 substr. MG1655]
 gi|81247440|gb|ABB68148.1| ThdF [Shigella boydii Sb227]
 gi|85676337|dbj|BAE77587.1| GTPase [Escherichia coli str. K12 substr. W3110]
 gi|169757185|gb|ACA79884.1| tRNA modification GTPase TrmE [Escherichia coli ATCC 8739]
 gi|169891043|gb|ACB04750.1| GTPase [Escherichia coli str. K-12 substr. DH10B]
 gi|187429011|gb|ACD08285.1| tRNA modification GTPase TrmE [Shigella boydii CDC 3083-94]
 gi|188488939|gb|EDU64042.1| tRNA modification GTPase TrmE [Escherichia coli 53638]
 gi|209914442|dbj|BAG79516.1| GTP-binding protein [Escherichia coli SE11]
 gi|218363042|emb|CAR00681.1| GTPase [Escherichia coli IAI1]
 gi|226838890|gb|EEH70917.1| tRNA modification GTPase TrmE [Escherichia sp. 1_1_43]
 gi|238861389|gb|ACR63387.1| GTPase [Escherichia coli BW2952]
 gi|260451436|gb|ACX41858.1| tRNA modification GTPase TrmE [Escherichia coli DH1]
 gi|291468294|gb|EFF10789.1| tRNA modification GTPase TrmE [Escherichia coli B354]
 gi|300398391|gb|EFJ81929.1| tRNA modification GTPase TrmE [Escherichia coli MS 69-1]
 gi|300415307|gb|EFJ98617.1| tRNA modification GTPase TrmE [Escherichia coli MS 115-1]
 gi|301077320|gb|EFK92126.1| tRNA modification GTPase TrmE [Escherichia coli MS 146-1]
 gi|309704154|emb|CBJ03501.1| probable tRNA modification GTPase [Escherichia coli ETEC H10407]
 gi|315138291|dbj|BAJ45450.1| tRNA modification GTPase TrmE [Escherichia coli DH1]
 gi|315618588|gb|EFU99174.1| tRNA modification GTPase TrmE [Escherichia coli 3431]
 gi|320174820|gb|EFW49943.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella dysenteriae
           CDC 74-1112]
 gi|320185529|gb|EFW60295.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella flexneri
           CDC 796-83]
 gi|323934942|gb|EGB31320.1| tRNA modification GTPase TrmE [Escherichia coli E1520]
 gi|331036725|gb|EGI08951.1| tRNA modification GTPase TrmE [Escherichia coli H736]
 gi|331067643|gb|EGI39045.1| tRNA modification GTPase TrmE [Escherichia coli TA280]
 gi|331077802|gb|EGI49014.1| tRNA modification GTPase TrmE [Escherichia coli H299]
 gi|332089435|gb|EGI94539.1| tRNA modification GTPase TrmE [Shigella boydii 3594-74]
 gi|332104856|gb|EGJ08202.1| tRNA modification GTPase TrmE [Shigella sp. D9]
 gi|332345697|gb|AEE59031.1| tRNA modification GTPase TrmE [Escherichia coli UMNK88]
          Length = 454

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|238913095|ref|ZP_04656932.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 467

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 14  MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDVDGSA 71

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 72  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 131

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 132 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 191

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 192 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 250

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 251 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 310

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 311 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 370

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE            
Sbjct: 371 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAADHLEQGKAQLLGAWAG 429

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 430 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 467


>gi|205354570|ref|YP_002228371.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|254811492|sp|B5RFY2|MNME_SALG2 RecName: Full=tRNA modification GTPase mnmE
 gi|205274351|emb|CAR39376.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326629706|gb|EGE36049.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 454

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRHADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE            
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|301324999|ref|ZP_07218552.1| tRNA modification GTPase TrmE [Escherichia coli MS 78-1]
 gi|300848114|gb|EFK75874.1| tRNA modification GTPase TrmE [Escherichia coli MS 78-1]
          Length = 479

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 249/458 (54%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +
Sbjct: 25  IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSV 83

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 84  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 143

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 144 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 203

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 204 -EEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 262

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 263 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 322

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 323 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 382

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+            
Sbjct: 383 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 441

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 442 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 479


>gi|300925531|ref|ZP_07141405.1| tRNA modification GTPase TrmE [Escherichia coli MS 182-1]
 gi|300418356|gb|EFK01667.1| tRNA modification GTPase TrmE [Escherichia coli MS 182-1]
          Length = 478

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 249/458 (54%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +
Sbjct: 24  IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSV 82

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 83  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 142

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 143 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 202

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 203 -EEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 261

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 262 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 321

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 322 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 381

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+            
Sbjct: 382 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 440

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 441 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 478


>gi|74314021|ref|YP_312440.1| tRNA modification GTPase TrmE [Shigella sonnei Ss046]
 gi|123615900|sp|Q3YWA7|MNME_SHISS RecName: Full=tRNA modification GTPase mnmE
 gi|73857498|gb|AAZ90205.1| GTP-binding protein in thiophene and furan oxidation [Shigella
           sonnei Ss046]
 gi|323173325|gb|EFZ58954.1| tRNA modification GTPase TrmE [Escherichia coli LT-68]
          Length = 454

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 161/456 (35%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG+E L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|26250447|ref|NP_756487.1| tRNA modification GTPase TrmE [Escherichia coli CFT073]
 gi|91213231|ref|YP_543217.1| tRNA modification GTPase TrmE [Escherichia coli UTI89]
 gi|110644049|ref|YP_671779.1| tRNA modification GTPase TrmE [Escherichia coli 536]
 gi|117625981|ref|YP_859304.1| tRNA modification GTPase TrmE [Escherichia coli APEC O1]
 gi|191170442|ref|ZP_03031995.1| tRNA modification GTPase TrmE [Escherichia coli F11]
 gi|218560782|ref|YP_002393695.1| tRNA modification GTPase TrmE [Escherichia coli S88]
 gi|227883929|ref|ZP_04001734.1| tRNA modification GTPase TrmE [Escherichia coli 83972]
 gi|237703508|ref|ZP_04533989.1| tRNA modification GTPase mnmE [Escherichia sp. 3_2_53FAA]
 gi|306815940|ref|ZP_07450078.1| tRNA modification GTPase TrmE [Escherichia coli NC101]
 gi|331660050|ref|ZP_08360988.1| tRNA modification GTPase TrmE [Escherichia coli TA206]
 gi|32171844|sp|Q8FBV3|MNME_ECOL6 RecName: Full=tRNA modification GTPase mnmE
 gi|122421834|sp|Q1R4M8|MNME_ECOUT RecName: Full=tRNA modification GTPase mnmE
 gi|123048671|sp|Q0TB01|MNME_ECOL5 RecName: Full=tRNA modification GTPase mnmE
 gi|166200477|sp|A1AHP0|MNME_ECOK1 RecName: Full=tRNA modification GTPase mnmE
 gi|254811476|sp|B7MGC8|MNME_ECO45 RecName: Full=tRNA modification GTPase mnmE
 gi|26110877|gb|AAN83061.1|AE016769_176 Probable tRNA modification GTPase trmE [Escherichia coli CFT073]
 gi|91074805|gb|ABE09686.1| probable tRNA modification GTPase TrmE [Escherichia coli UTI89]
 gi|110345641|gb|ABG71878.1| probable tRNA modification GTPase TrmE [Escherichia coli 536]
 gi|115515105|gb|ABJ03180.1| tRNA modification GTPase [Escherichia coli APEC O1]
 gi|190909250|gb|EDV68836.1| tRNA modification GTPase TrmE [Escherichia coli F11]
 gi|218367551|emb|CAR05336.1| GTPase [Escherichia coli S88]
 gi|226902772|gb|EEH89031.1| tRNA modification GTPase mnmE [Escherichia sp. 3_2_53FAA]
 gi|227839207|gb|EEJ49673.1| tRNA modification GTPase TrmE [Escherichia coli 83972]
 gi|294489502|gb|ADE88258.1| tRNA modification GTPase TrmE [Escherichia coli IHE3034]
 gi|305850336|gb|EFM50793.1| tRNA modification GTPase TrmE [Escherichia coli NC101]
 gi|307555847|gb|ADN48622.1| tRNA modification GTPase TrmE [Escherichia coli ABU 83972]
 gi|307628783|gb|ADN73087.1| tRNA modification GTPase TrmE [Escherichia coli UM146]
 gi|323949951|gb|EGB45835.1| tRNA modification GTPase TrmE [Escherichia coli H252]
 gi|323954998|gb|EGB50776.1| tRNA modification GTPase TrmE [Escherichia coli H263]
 gi|331053265|gb|EGI25298.1| tRNA modification GTPase TrmE [Escherichia coli TA206]
          Length = 454

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|167548868|ref|ZP_02342627.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205325776|gb|EDZ13615.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 454

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE            
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAADHLEQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|197364644|ref|YP_002144281.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|254811495|sp|B5BIL9|MNME_SALPK RecName: Full=tRNA modification GTPase mnmE
 gi|197096121|emb|CAR61717.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 454

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 254/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +  +   +     + +RHL  L++   +LE            
Sbjct: 358 SARTGEGVDVLRNNLKQSMGFE-TNMEGGFLARRRHLQALAEAANHLEQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|224585642|ref|YP_002639441.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|254811494|sp|C0Q2L4|MNME_SALPC RecName: Full=tRNA modification GTPase mnmE
 gi|224470170|gb|ACN48000.1| tRNA modification GTPase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 454

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE            
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFDI-NMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|82779236|ref|YP_405585.1| tRNA modification GTPase TrmE [Shigella dysenteriae Sd197]
 gi|293417178|ref|ZP_06659805.1| tRNA modification GTPase TrmE [Escherichia coli B185]
 gi|309784244|ref|ZP_07678883.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1617]
 gi|123561062|sp|Q329B1|MNME_SHIDS RecName: Full=tRNA modification GTPase mnmE
 gi|81243384|gb|ABB64094.1| GTP-binding protein [Shigella dysenteriae Sd197]
 gi|291431209|gb|EFF04202.1| tRNA modification GTPase TrmE [Escherichia coli B185]
 gi|308927751|gb|EFP73219.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1617]
          Length = 454

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGISEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|170681108|ref|YP_001746036.1| tRNA modification GTPase TrmE [Escherichia coli SMS-3-5]
 gi|170767097|ref|ZP_02901550.1| tRNA modification GTPase TrmE [Escherichia albertii TW07627]
 gi|194431305|ref|ZP_03063598.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1012]
 gi|218551237|ref|YP_002385029.1| tRNA modification GTPase TrmE [Escherichia fergusonii ATCC 35469]
 gi|218691995|ref|YP_002400207.1| tRNA modification GTPase TrmE [Escherichia coli ED1a]
 gi|300824308|ref|ZP_07104424.1| tRNA modification GTPase TrmE [Escherichia coli MS 119-7]
 gi|300903017|ref|ZP_07120959.1| tRNA modification GTPase TrmE [Escherichia coli MS 84-1]
 gi|301305947|ref|ZP_07212029.1| tRNA modification GTPase TrmE [Escherichia coli MS 124-1]
 gi|331649534|ref|ZP_08350620.1| tRNA modification GTPase TrmE [Escherichia coli M605]
 gi|331665357|ref|ZP_08366258.1| tRNA modification GTPase TrmE [Escherichia coli TA143]
 gi|331679805|ref|ZP_08380475.1| tRNA modification GTPase TrmE [Escherichia coli H591]
 gi|205829138|sp|B1LL33|MNME_ECOSM RecName: Full=tRNA modification GTPase mnmE
 gi|254811480|sp|B7N211|MNME_ECO81 RecName: Full=tRNA modification GTPase mnmE
 gi|254811485|sp|B7LK49|MNME_ESCF3 RecName: Full=tRNA modification GTPase mnmE
 gi|170124535|gb|EDS93466.1| tRNA modification GTPase TrmE [Escherichia albertii TW07627]
 gi|170518826|gb|ACB17004.1| tRNA modification GTPase TrmE [Escherichia coli SMS-3-5]
 gi|194420760|gb|EDX36836.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1012]
 gi|218358779|emb|CAQ91437.1| GTPase [Escherichia fergusonii ATCC 35469]
 gi|218429559|emb|CAR10382.1| GTPase [Escherichia coli ED1a]
 gi|222035421|emb|CAP78166.1| tRNA modification GTPase trmE [Escherichia coli LF82]
 gi|281180761|dbj|BAI57091.1| GTP-binding protein [Escherichia coli SE15]
 gi|284923790|emb|CBG36888.1| probable tRNA modification GTPase [Escherichia coli 042]
 gi|300404923|gb|EFJ88461.1| tRNA modification GTPase TrmE [Escherichia coli MS 84-1]
 gi|300523195|gb|EFK44264.1| tRNA modification GTPase TrmE [Escherichia coli MS 119-7]
 gi|300838798|gb|EFK66558.1| tRNA modification GTPase TrmE [Escherichia coli MS 124-1]
 gi|312948274|gb|ADR29101.1| tRNA modification GTPase TrmE [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315254605|gb|EFU34573.1| tRNA modification GTPase TrmE [Escherichia coli MS 85-1]
 gi|320193747|gb|EFW68380.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
           WV_060327]
 gi|323944179|gb|EGB40259.1| tRNA modification GTPase TrmE [Escherichia coli H120]
 gi|323965768|gb|EGB61219.1| tRNA modification GTPase TrmE [Escherichia coli M863]
 gi|324111604|gb|EGC05585.1| tRNA modification GTPase TrmE [Escherichia fergusonii B253]
 gi|327250849|gb|EGE62551.1| tRNA modification GTPase TrmE [Escherichia coli STEC_7v]
 gi|330908023|gb|EGH36542.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
           AA86]
 gi|331042032|gb|EGI14176.1| tRNA modification GTPase TrmE [Escherichia coli M605]
 gi|331057867|gb|EGI29853.1| tRNA modification GTPase TrmE [Escherichia coli TA143]
 gi|331072977|gb|EGI44302.1| tRNA modification GTPase TrmE [Escherichia coli H591]
 gi|332083996|gb|EGI89203.1| tRNA modification GTPase TrmE [Shigella dysenteriae 155-74]
 gi|332084896|gb|EGI90079.1| tRNA modification GTPase TrmE [Shigella boydii 5216-82]
          Length = 454

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|323164682|gb|EFZ50477.1| tRNA modification GTPase TrmE [Shigella sonnei 53G]
          Length = 454

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 161/456 (35%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGGVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG+E L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|295095342|emb|CBK84432.1| tRNA modification GTPase trmE [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 454

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 163/458 (35%), Positives = 251/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDADGTP 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  + ND+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNQVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG+E L + +K  +      +     + +RHL  L +  R+LE            
Sbjct: 358 SARTGEGVEALRSHLKQSMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|325499511|gb|EGC97370.1| tRNA modification GTPase TrmE [Escherichia fergusonii ECD227]
          Length = 454

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 161/456 (35%), Positives = 249/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DGR+LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGRVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|301028501|ref|ZP_07191740.1| tRNA modification GTPase TrmE [Escherichia coli MS 196-1]
 gi|299878448|gb|EFI86659.1| tRNA modification GTPase TrmE [Escherichia coli MS 196-1]
          Length = 454

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPMILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHVLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|206578096|ref|YP_002241307.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae 342]
 gi|288937945|ref|YP_003442004.1| tRNA modification GTPase TrmE [Klebsiella variicola At-22]
 gi|290511686|ref|ZP_06551054.1| tRNA modification GTPase TrmE [Klebsiella sp. 1_1_55]
 gi|254811487|sp|B5XZP4|MNME_KLEP3 RecName: Full=tRNA modification GTPase mnmE
 gi|206567154|gb|ACI08930.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae 342]
 gi|288892654|gb|ADC60972.1| tRNA modification GTPase TrmE [Klebsiella variicola At-22]
 gi|289775476|gb|EFD83476.1| tRNA modification GTPase TrmE [Klebsiella sp. 1_1_55]
          Length = 454

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 159/458 (34%), Positives = 249/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQAVLG-KLPKPRYADYLPFNDVDGTP 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTSAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGLSEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG+E L N +K  +      +     + +RHL  L +   +L+            
Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TSMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|205360204|ref|ZP_02835285.2| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205340459|gb|EDZ27223.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320088264|emb|CBY98026.1| tRNA modification GTPase mnmE [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 467

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 163/458 (35%), Positives = 251/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F   DG  
Sbjct: 14  MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDADGSA 71

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 72  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 131

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 132 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 191

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 192 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 250

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 251 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 310

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 311 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 370

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE            
Sbjct: 371 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 429

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 430 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 467


>gi|215489046|ref|YP_002331477.1| tRNA modification GTPase TrmE [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967884|ref|ZP_07782096.1| tRNA modification GTPase TrmE [Escherichia coli 2362-75]
 gi|254811475|sp|B7UMH3|MNME_ECO27 RecName: Full=tRNA modification GTPase mnmE
 gi|215267118|emb|CAS11565.1| GTPase [Escherichia coli O127:H6 str. E2348/69]
 gi|312287445|gb|EFR15353.1| tRNA modification GTPase TrmE [Escherichia coli 2362-75]
          Length = 454

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSELNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|323975226|gb|EGB70330.1| tRNA modification GTPase TrmE [Escherichia coli TW10509]
          Length = 454

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 249/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+   +        ++
Sbjct: 360 RTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKVQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|320180048|gb|EFW54990.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella boydii ATCC
           9905]
          Length = 454

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVDVLHNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|218702556|ref|YP_002410185.1| tRNA modification GTPase TrmE [Escherichia coli IAI39]
 gi|254811479|sp|B7NR09|MNME_ECO7I RecName: Full=tRNA modification GTPase mnmE
 gi|218372542|emb|CAR20417.1| GTPase [Escherichia coli IAI39]
          Length = 454

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWSEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|290554|gb|AAA62057.1| 50 kD protein [Escherichia coli]
          Length = 454

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLRXXIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|15640035|ref|NP_062587.1| tRNA modification GTPase TrmE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|153827657|ref|ZP_01980324.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MZO-2]
 gi|227080240|ref|YP_002808791.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae M66-2]
 gi|254851569|ref|ZP_05240919.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MO10]
 gi|298501189|ref|ZP_07010988.1| tRNA modification GTPase TrmE [Vibrio cholerae MAK 757]
 gi|9654394|gb|AAF93181.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|149737870|gb|EDM52775.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MZO-2]
 gi|227008128|gb|ACP04340.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae M66-2]
 gi|254847274|gb|EET25688.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MO10]
 gi|297540061|gb|EFH76123.1| tRNA modification GTPase TrmE [Vibrio cholerae MAK 757]
          Length = 464

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 158/457 (34%), Positives = 245/457 (53%), Gaps = 21/457 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
               +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ L
Sbjct: 11  TMTTDTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQL 69

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N 
Sbjct: 70  DQGIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLND 129

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E 
Sbjct: 130 KMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE- 188

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E++   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ 
Sbjct: 189 EEIDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSG 248

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           K+ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD 
Sbjct: 249 KESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADR 308

Query: 302 ILLLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLIS 344
           +L + +         ++I        P+NI    I  K+D            +     +S
Sbjct: 309 VLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLS 368

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TG+G++ L   +K  +            + +RHL  L +   +L +     E     +
Sbjct: 369 AKTGQGVDALRQHLKECM-GFSGNQEGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGE 427

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 428 ILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464


>gi|323189559|gb|EFZ74839.1| tRNA modification GTPase TrmE [Escherichia coli RN587/1]
          Length = 454

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 159/456 (34%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       +         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMNELNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|56415716|ref|YP_152791.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|81361369|sp|Q5PKU1|MNME_SALPA RecName: Full=tRNA modification GTPase mnmE
 gi|56129973|gb|AAV79479.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
          Length = 454

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 254/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARGVAQEVLG-KLPKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +  +   +     + +RHL  L++   +LE            
Sbjct: 358 SARTGEGVDVLRNNLKQSMGFE-TNMEGGFLARRRHLQALAEAANHLEQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|293393716|ref|ZP_06638024.1| tRNA modification GTPase [Serratia odorifera DSM 4582]
 gi|291423760|gb|EFE96981.1| tRNA modification GTPase [Serratia odorifera DSM 4582]
          Length = 454

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 162/456 (35%), Positives = 247/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      + I+R+SG +  QV + +   K P PR A    F   DG  LD
Sbjct: 2   STSDTIVAQATPPGRGGVGILRISGRAAQQVAQTLLG-KLPKPRHADYLPFRDADGATLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R +M  + G  SS   Q ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAMNSLQGAFSSRIHQLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  + ND+ S   + + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNGVMNDLDSVRVEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAGDEVERIGIERAWNEIEQADRV 299

Query: 303 LLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  + +               P  +    +  K+D+                 +S+
Sbjct: 300 LFMVDGTTTEATEPGEIWPEFMARLPATLPITVVRNKADITGEPLGLKEVNGHSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TG+G+E L + +K  +      +     + +RHL  L Q  ++L             ++
Sbjct: 360 RTGQGIEVLRDHLKQSM-GFTSNMEGGFLARRRHLQALEQAAQHLVQGKEQLVSAYAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|262172771|ref|ZP_06040449.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus
           MB-451]
 gi|261893847|gb|EEY39833.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus
           MB-451]
          Length = 453

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 158/455 (34%), Positives = 246/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP    V + +  +    PR A    F   +G+ LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDENGQQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVL 299

Query: 304 LLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            + +         +EI        P+NI    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G++ L   +K  +            + +RHL  L +   +L++     E     +I+
Sbjct: 360 TGQGVDALRQHLKECM-GFAGNQEGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|261341633|ref|ZP_05969491.1| hypothetical protein ENTCAN_08099 [Enterobacter cancerogenus ATCC
           35316]
 gi|288315988|gb|EFC54926.1| tRNA modification GTPase TrmE [Enterobacter cancerogenus ATCC
           35316]
          Length = 454

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 249/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDSDGTP 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNEVMKDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG+++L N +K  +      +     + +RHL  L +   +L             
Sbjct: 358 SARTGEGVDDLRNHLKQSMGFD-TSMEGGFLARRRHLQALEEAANHLVQGKAQLIGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|283836140|ref|ZP_06355881.1| hypothetical protein CIT292_10562 [Citrobacter youngae ATCC 29220]
 gi|291068330|gb|EFE06439.1| tRNA modification GTPase TrmE [Citrobacter youngae ATCC 29220]
          Length = 454

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 161/458 (35%), Positives = 251/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSS 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNSVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPANIWPDFIARLPAKLPITVVRNKADITGETLGLSEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +  +   +     + +RHL  L++   +LE            
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFE-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|157155417|ref|YP_001465191.1| tRNA modification GTPase TrmE [Escherichia coli E24377A]
 gi|166991107|sp|A7ZTR2|MNME_ECO24 RecName: Full=tRNA modification GTPase mnmE
 gi|157077447|gb|ABV17155.1| tRNA modification GTPase TrmE [Escherichia coli E24377A]
          Length = 454

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 247/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF   K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLYDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG+E L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|262402089|ref|ZP_06078653.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC586]
 gi|262351735|gb|EEZ00867.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC586]
          Length = 453

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 159/455 (34%), Positives = 246/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPLSAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVL 299

Query: 304 LLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            + +         +EI        P+NI    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G++ L   +K  +            + +RHL  L +   +L++     E     +I+
Sbjct: 360 TGQGVDALRQHLKECM-GFAGNQEGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|258622951|ref|ZP_05717966.1| tRNA modification GTPase [Vibrio mimicus VM573]
 gi|258584734|gb|EEW09468.1| tRNA modification GTPase [Vibrio mimicus VM573]
          Length = 464

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 158/457 (34%), Positives = 246/457 (53%), Gaps = 21/457 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
               +TI A +T      + IIR+SGP    V + +  +    PR A    F   +G+ L
Sbjct: 11  TMTTDTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDENGQQL 69

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N 
Sbjct: 70  DQGIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLND 129

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E 
Sbjct: 130 KMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE- 188

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E++   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ 
Sbjct: 189 EEIDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSG 248

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           K+ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD 
Sbjct: 249 KESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADR 308

Query: 302 ILLLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLIS 344
           +L + +         +EI        P+NI    I  K+D            +     +S
Sbjct: 309 VLFMVDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLS 368

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TG+G++ L   +K  +            + +RHL  L +   +L++     E     +
Sbjct: 369 AKTGQGVDALRQHLKECM-GFAGNQEGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGE 427

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 428 ILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464


>gi|146313778|ref|YP_001178852.1| tRNA modification GTPase TrmE [Enterobacter sp. 638]
 gi|166991109|sp|A4WGH1|MNME_ENT38 RecName: Full=tRNA modification GTPase mnmE
 gi|145320654|gb|ABP62801.1| tRNA modification GTPase trmE [Enterobacter sp. 638]
 gi|190171238|gb|ACE63689.1| ThdF [Enterobacter sp. 638]
          Length = 454

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 250/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFNDADGTA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNTVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTSAVDPADIWPDFIARLPAKLPITVVRNKADMTGETLGLSDVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG+E+L N +K  +  +   +     + +RHL  L     +L+            
Sbjct: 358 SARTGEGVEDLRNHLKQSMGFE-TNMEGGFLARRRHLQALEAAANHLDQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|271502718|ref|YP_003335744.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech586]
 gi|270346273|gb|ACZ79038.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech586]
          Length = 454

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 248/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG +
Sbjct: 1   MSHT-DTIVAQATPPGRGGVGILRISGRQASAVAQAVLG-KLPKPRYADYLPFHDVDGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVVALPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  SS   Q ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSSRVHQLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+     + + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAMLNAVIGDLEGVRGEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYDHLI------ 343
            +L + +  +   +             P  +    +  K+D+        +         
Sbjct: 298 RVLFMVDGTTTDAVEPAAIWPEFMARLPSRLPITVVRNKADVTGEPLGIEEVNTYSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TG+G++ L + +K  +            + +RHL  L Q  ++L+            
Sbjct: 358 SARTGDGVDLLRDHLKQSM-GFTSNTEGGFLARRRHLQALEQAAQHLQQGHEQLVGAYAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|229530209|ref|ZP_04419598.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
           12129(1)]
 gi|229332342|gb|EEN97829.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
           12129(1)]
          Length = 453

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 158/455 (34%), Positives = 245/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVL 299

Query: 304 LLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            + +         ++I        P+NI    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTEATDPQDIWPDFFDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G++ L   +K  +            + +RHL  L +   +L +     E     +I+
Sbjct: 360 TGQGVDALRQHLKECM-GFSGNQEGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|262040470|ref|ZP_06013713.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042223|gb|EEW43251.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 454

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 161/458 (35%), Positives = 249/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQAVLG-KLPKPRYADYLPFNDVDGTP 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLHEVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D VE+ GI+R + E+  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIAQAD 297

Query: 301 LILLLKEIN-----SKKEI------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +          EI        P  +    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTGAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGISEVNGHSHIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG+E L N +K  +      +     + +RHL  L +   +L+            
Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|157144348|ref|YP_001451667.1| tRNA modification GTPase TrmE [Citrobacter koseri ATCC BAA-895]
 gi|157081553|gb|ABV11231.1| hypothetical protein CKO_00052 [Citrobacter koseri ATCC BAA-895]
          Length = 466

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 250/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG  
Sbjct: 13  MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDADGTA 70

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 71  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 130

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 131 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 190

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 191 -EEIDFLSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 249

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 250 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 309

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 310 RVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVRL 369

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +L+            
Sbjct: 370 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLQQGKSQLLGAWAG 428

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 429 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 466


>gi|237729028|ref|ZP_04559509.1| tRNA modification GTPase TrmE [Citrobacter sp. 30_2]
 gi|226909650|gb|EEH95568.1| tRNA modification GTPase TrmE [Citrobacter sp. 30_2]
          Length = 454

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 161/458 (35%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  + +D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNSVISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADITGETLGLSEVNSHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +  +   +     + +RHL  L++   +LE            
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFE-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|229520177|ref|ZP_04409604.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TM
           11079-80]
 gi|229342771|gb|EEO07762.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TM
           11079-80]
          Length = 453

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 158/455 (34%), Positives = 245/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSTDLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVL 299

Query: 304 LLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            + +         ++I        P+NI    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G++ L   +K  +            + +RHL  L +   +L +     E     +I+
Sbjct: 360 TGQGVDALRQHLKECM-GFSGNQEGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|300896036|ref|ZP_07114596.1| tRNA modification GTPase TrmE [Escherichia coli MS 198-1]
 gi|300360060|gb|EFJ75930.1| tRNA modification GTPase TrmE [Escherichia coli MS 198-1]
          Length = 462

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 250/458 (54%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +
Sbjct: 8   IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSV 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P+LR+A PGEFS RAF N
Sbjct: 67  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPDLRIARPGEFSERAFLN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 127 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 187 -EEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 246 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 305

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 306 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 365

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+            
Sbjct: 366 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 424

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 425 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 462


>gi|153821980|ref|ZP_01974647.1| tRNA modification GTPase TrmE [Vibrio cholerae B33]
 gi|229508290|ref|ZP_04397794.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae BX
           330286]
 gi|229508871|ref|ZP_04398362.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae B33]
 gi|229517142|ref|ZP_04406588.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae RC9]
 gi|229606564|ref|YP_002877212.1| tRNA modification GTPase TrmE [Vibrio cholerae MJ-1236]
 gi|255746813|ref|ZP_05420759.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholera CIRS
           101]
 gi|262155893|ref|ZP_06029015.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
           INDRE 91/1]
 gi|31340537|sp|Q9KVY5|MNME_VIBCH RecName: Full=tRNA modification GTPase mnmE
 gi|126520519|gb|EAZ77742.1| tRNA modification GTPase TrmE [Vibrio cholerae B33]
 gi|229346205|gb|EEO11177.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae RC9]
 gi|229354146|gb|EEO19078.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae B33]
 gi|229354563|gb|EEO19485.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae BX
           330286]
 gi|229369219|gb|ACQ59642.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
           MJ-1236]
 gi|255735570|gb|EET90969.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholera CIRS
           101]
 gi|262030345|gb|EEY48987.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
           INDRE 91/1]
          Length = 453

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 158/455 (34%), Positives = 245/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVL 299

Query: 304 LLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            + +         ++I        P+NI    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G++ L   +K  +            + +RHL  L +   +L +     E     +I+
Sbjct: 360 TGQGVDALRQHLKECM-GFSGNQEGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|238897217|ref|YP_002921965.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae NTUH-K2044]
 gi|330005209|ref|ZP_08305168.1| tRNA modification GTPase TrmE [Klebsiella sp. MS 92-3]
 gi|238549547|dbj|BAH65898.1| tRNA modification GTPase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328536341|gb|EGF62703.1| tRNA modification GTPase TrmE [Klebsiella sp. MS 92-3]
          Length = 454

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 161/458 (35%), Positives = 249/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQAVLG-KLPKPRYADYLPFNDVDGTP 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNEVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D VE+ GI+R + E+  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIAQAD 297

Query: 301 LILLLKEIN-----SKKEI------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +          EI        P  +    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTGAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGISEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG+E L N +K  +      +     + +RHL  L +   +L+            
Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|229524906|ref|ZP_04414311.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae bv.
           albensis VL426]
 gi|229338487|gb|EEO03504.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae bv.
           albensis VL426]
          Length = 453

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/455 (34%), Positives = 245/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYSPFTDEDGQQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVL 299

Query: 304 LLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            + +         ++I        P+NI    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGESLGICHVNQPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G++ L   +K  +            + +RHL  L +   +L +     E     +I+
Sbjct: 360 TGQGVDALRQHLKECM-GFSGSQEGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|153212987|ref|ZP_01948581.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae 1587]
 gi|124116213|gb|EAY35033.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae 1587]
          Length = 464

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/457 (34%), Positives = 245/457 (53%), Gaps = 21/457 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
               +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ L
Sbjct: 11  TMTTDTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQL 69

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N 
Sbjct: 70  DQGIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLND 129

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E 
Sbjct: 130 KMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE- 188

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E++   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ 
Sbjct: 189 EEIDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSG 248

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           K+ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD 
Sbjct: 249 KESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADR 308

Query: 302 ILLLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLIS 344
           +L + +         ++I        P+NI    I  K+D            +     +S
Sbjct: 309 VLFMVDGTTTEATDPQDIWPDFFDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLS 368

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TG+G++ L   +K  +            + +RHL  L +   +L +     E     +
Sbjct: 369 AKTGQGVDALRQHLKECM-GFSGNQEGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGE 427

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 428 ILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464


>gi|205829165|sp|A8ACL8|MNME_CITK8 RecName: Full=tRNA modification GTPase mnmE
          Length = 454

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 250/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDADGTA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +L+            
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLQQGKSQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|153830815|ref|ZP_01983482.1| tRNA modification GTPase TrmE [Vibrio cholerae 623-39]
 gi|148873699|gb|EDL71834.1| tRNA modification GTPase TrmE [Vibrio cholerae 623-39]
          Length = 453

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 157/455 (34%), Positives = 246/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP    V + +  +    PR A    F   +G+ LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDENGQQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVL 299

Query: 304 LLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            + +       + ++I        P+NI    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTEATNPQDIWPDFVDRLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G++ L   +K  +            + +RHL  L +   +L++     E     +I+
Sbjct: 360 TGHGVDALRQHLKECM-GFAGNQEGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|152972614|ref|YP_001337760.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|166200482|sp|A6TG09|MNME_KLEP7 RecName: Full=tRNA modification GTPase mnmE
 gi|150957463|gb|ABR79493.1| tRNA modification GTPase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 454

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/458 (34%), Positives = 249/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQAVLG-KLPKPRYADYLPFNDVDGTP 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNEVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D VE+ GI+R + E+  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIAQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTSAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGISEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TG+G+E L N +K  +      +     + +RHL  L +   +L+            
Sbjct: 358 SARTGDGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|251791811|ref|YP_003006532.1| tRNA modification GTPase TrmE [Dickeya zeae Ech1591]
 gi|247540432|gb|ACT09053.1| tRNA modification GTPase TrmE [Dickeya zeae Ech1591]
          Length = 454

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 248/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + I   K P PR A    F   DG +
Sbjct: 1   MSHT-DTIVAQATPPGRGGVGILRISGRQASVVAQAILG-KLPKPRYADYLPFHDADGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +A  P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVAAQPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  SS   Q ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSSRVHQLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +   + + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAMLNEVIGDLEAVRGEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAGDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYDHLI------ 343
            +L + +  +   +             P  +    +  K+D+        +         
Sbjct: 298 RVLFMVDGTTTDAVEPAAIWPEFMARLPSRLPITVVRNKADVTGEPLGIEEVNTYSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TG+G++ L + +K  +            + +RHL  L Q  ++L+            
Sbjct: 358 SARTGDGVDLLRDHLKQSM-GFTSNTEGGFLARRRHLQALEQAAQHLQQGHEQLVGAYAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|193069233|ref|ZP_03050190.1| tRNA modification GTPase TrmE [Escherichia coli E110019]
 gi|260857883|ref|YP_003231774.1| GTPase TrmE [Escherichia coli O26:H11 str. 11368]
 gi|192957557|gb|EDV88003.1| tRNA modification GTPase TrmE [Escherichia coli E110019]
 gi|257756532|dbj|BAI28034.1| GTPase TrmE [Escherichia coli O26:H11 str. 11368]
 gi|323155383|gb|EFZ41566.1| tRNA modification GTPase TrmE [Escherichia coli EPECa14]
          Length = 454

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 159/456 (34%), Positives = 247/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF   K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLYDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|218707353|ref|YP_002414872.1| tRNA modification GTPase TrmE [Escherichia coli UMN026]
 gi|293407346|ref|ZP_06651268.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1412]
 gi|298383087|ref|ZP_06992682.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1302]
 gi|254811482|sp|B7NF24|MNME_ECOLU RecName: Full=tRNA modification GTPase mnmE
 gi|218434450|emb|CAR15378.1| GTPase [Escherichia coli UMN026]
 gi|291425637|gb|EFE98673.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1412]
 gi|298276923|gb|EFI18441.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1302]
          Length = 454

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 249/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P+LR+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPDLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|121730054|ref|ZP_01682463.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V52]
 gi|147673066|ref|YP_001218408.1| tRNA modification GTPase TrmE [Vibrio cholerae O395]
 gi|254291135|ref|ZP_04961932.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae
           AM-19226]
 gi|121628203|gb|EAX60726.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V52]
 gi|146314949|gb|ABQ19488.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O395]
 gi|150422980|gb|EDN14930.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae
           AM-19226]
 gi|227011994|gb|ACP08204.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O395]
          Length = 464

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/457 (34%), Positives = 245/457 (53%), Gaps = 21/457 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
               +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ L
Sbjct: 11  TMTTDTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQL 69

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N 
Sbjct: 70  DQGIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLND 129

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E 
Sbjct: 130 KMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE- 188

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E++   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ 
Sbjct: 189 EEIDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSG 248

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           K+ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD 
Sbjct: 249 KESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADR 308

Query: 302 ILLLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLIS 344
           +L + +         ++I        P+NI    I  K+D            +     +S
Sbjct: 309 VLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLS 368

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TG+G++ L   +K  +            + +RHL  L +   +L +     E     +
Sbjct: 369 AKTGQGVDALRQHLKECM-GFSGNQEGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGE 427

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 428 ILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464


>gi|37528711|ref|NP_932056.1| tRNA modification GTPase TrmE [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|46577344|sp|Q7MAX1|MNME_PHOLL RecName: Full=tRNA modification GTPase mnmE
 gi|36788150|emb|CAE17277.1| tRNA modification GTPase TrmE [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 454

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 166/458 (36%), Positives = 254/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      + I+R+SGP   QV E +   K P PR A    F  +DG+I
Sbjct: 1   MNTT-DTIVAQATPPGRGGVGILRVSGPKAAQVAEVVLG-KLPKPRYADYLPFRDVDGQI 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ I FP P SFTGED  E   HGG  +++ +L+ +  +  +R+ANPGEFS RAF N
Sbjct: 59  LDQGIAIYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLSGVRIANPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R +M  + G  S+   Q ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTQVHQMVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  ++    SQ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAKLDEVIVELERVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLI 343
            +L + +  +   +             PK++    +  K+D+    T   +        +
Sbjct: 298 RVLFMVDSTTTNAVEPVEIWPEFMARLPKSLPITVVRNKTDMTDEETSIAEVSGYSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ +GEG++ L + +K  +            + +RHL  L+    +L+            
Sbjct: 358 SARSGEGIDLLRDHLKETM-GFSSNTEGGFLARRRHLQALNTAAEHLQQGHEQLVVARSG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|260870437|ref|YP_003236839.1| GTPase TrmE [Escherichia coli O111:H- str. 11128]
 gi|257766793|dbj|BAI38288.1| GTPase TrmE [Escherichia coli O111:H- str. 11128]
 gi|323177718|gb|EFZ63302.1| tRNA modification GTPase TrmE [Escherichia coli 1180]
          Length = 454

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/456 (34%), Positives = 247/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V E +   K P PR A    F   +G +LD
Sbjct: 2   SDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDANGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF   K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLYDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   +             P  +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +      +     + +RHL  L Q   +L+            ++
Sbjct: 360 RTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|327482917|gb|AEA77324.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
           LMA3894-4]
          Length = 453

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 159/455 (34%), Positives = 246/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T    S + IIR+SGP    V + +  +    PR A    F   DG+ LD+
Sbjct: 2   TTDTIVAQATAPGRSGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVL 299

Query: 304 LLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            + +         ++I        P+NI    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G++ L   +K  +            + +RHL  L +   +L +     E     +I+
Sbjct: 360 TGQGVDALRQHLKECM-GFSGNQEGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|291615647|ref|YP_003518389.1| TrmE [Pantoea ananatis LMG 20103]
 gi|291150677|gb|ADD75261.1| TrmE [Pantoea ananatis LMG 20103]
          Length = 454

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 164/458 (35%), Positives = 249/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SGP   +V + I   K P PR A    F   DG +
Sbjct: 1   MSH-SDTIVAQATPPGRGGVGILRISGPRAAEVAQQILG-KLPKPRYADYLSFNDSDGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRIVALPGLRIAQPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S      ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRINHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  + +D+ +  ++ K G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEGQLNTVISDLDAVRAEAKQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 297

Query: 301 LILLLK-----EINSKKEI------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L +      +     EI        P  +    +  K+D+       +         +
Sbjct: 298 RVLFMVDGTTTDATEPAEIWPDFVARLPPQLPITVVRNKADITGEARGLTNANGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ T EGL+ L + +K  +      +     + +RHL  L     +LE            
Sbjct: 358 SARTSEGLDTLRDHLKQTM-GFADNMEGGFLARRRHLQALELAATHLEQGKSQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|261213270|ref|ZP_05927552.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC341]
 gi|260837544|gb|EEX64247.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC341]
          Length = 453

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 157/455 (34%), Positives = 244/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP    V + +  +    PR A    F   +G+ LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRML-RPRYAEYLPFTDENGQQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S      +  L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVGSLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVL 299

Query: 304 LLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            + +         ++I        P+NI    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTEATDPQDIWPDFVDRLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G++ L   +K  +            + +RHL  L +   +L++     E     +I+
Sbjct: 360 TGHGVDALRQHLKECM-GFSGNQEGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|330505868|ref|YP_004382737.1| tRNA modification GTPase TrmE [Pseudomonas mendocina NK-01]
 gi|328920154|gb|AEB60985.1| tRNA modification GTPase TrmE [Pseudomonas mendocina NK-01]
          Length = 455

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 165/459 (35%), Positives = 253/459 (55%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH ++TI AV+T      + I+R+SGP    + + IC+++   PR A    FF    + 
Sbjct: 1   MNHARDTIAAVATAQGRGGVGIVRVSGPLAGDLAQAICRREL-KPRFAHHGPFFAEQDQT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL I FP P SFTGED  E   HGG  V++ +L    ++   RLA PGEFS RAF N
Sbjct: 60  LDEGLAIYFPGPNSFTGEDVLELQGHGGPVVLDLLLRRCLEL-GARLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + GE S       + L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSKRVHALTESLIQLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL+ +  ++ D+S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLSQLDSVRADLSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+TDD VE+ G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDHVERIGVERALKAISEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLY-------STYTEEYDHL 342
            +LL+ +  + +               P       I  K+DL        ++        
Sbjct: 298 RVLLVVDSTAPEAADPFALWPEFLEQRPDPARVTLIRNKADLSGEAVGLQTSADGHVTLS 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ + EGLE L   +K+ +  + +       + +RHL  L Q  +YL+         G 
Sbjct: 358 LSAKSAEGLELLREHLKACMGYQ-QTAESGFSARRRHLEALHQAEQYLQHGRNQLTLMGA 416

Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LR+A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 GELLAEDLRMAQQALGEITGAFSSDDLLGRIFSSFCIGK 455


>gi|270264114|ref|ZP_06192381.1| tRNA modification GTPase mnmE [Serratia odorifera 4Rx13]
 gi|270041763|gb|EFA14860.1| tRNA modification GTPase mnmE [Serratia odorifera 4Rx13]
          Length = 455

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 246/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TI A +T      + I+R+SG       + +   K P PR A    F    G  
Sbjct: 1   MSSTTDTIVAQATPPGRGGVGILRISGRGAKDAAQALLG-KLPKPRYADYLPFRDAAGAT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 60  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R +M  + G  S+   Q ++ LTH+R ++EA +DF +
Sbjct: 120 DKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTRIHQLVEALTHLRIYVEAAIDFPD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 180 -EEIDFLSDGKIEAQLNGVMADLDNVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 239 GRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQAD 298

Query: 301 LILLLKE-----INSKKEI------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +          EI        P ++    +  K+D+       +         +
Sbjct: 299 RVLFMVDGTTTAATEPAEIWPEFMARLPHSLPITVVRNKADITGETLGMTEVNGHSLIRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L + +K  +      +     + +RHL  L Q   +L             
Sbjct: 359 SARTGEGIDLLRDHLKQSM-GFTSNMEGGFLARRRHLQALEQAALHLVEGKEQLVSAYAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 418 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 455


>gi|188535566|ref|YP_001909363.1| tRNA modification GTPase TrmE [Erwinia tasmaniensis Et1/99]
 gi|254811484|sp|B2VCE7|MNME_ERWT9 RecName: Full=tRNA modification GTPase mnmE
 gi|188030608|emb|CAO98503.1| tRNA modification GTPase TrmE [Erwinia tasmaniensis Et1/99]
          Length = 454

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 166/458 (36%), Positives = 254/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH  +TI A +T      + I+R+SG    +V + +   K P PR A    F   DG  
Sbjct: 1   MNH-SDTIVAQATPPGRGGVGILRVSGSKAAEVAQLLLG-KLPKPRYADYLPFRDADGST 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  EF  HGG  +++ +L+ +  +P LR+ANPGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLEFQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  + ++++   S+ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLHQVIHNLAEVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 297

Query: 301 LILLLKE-----INSKKEI------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +       +  EI        P+++    +  K+D+                 +
Sbjct: 298 HVLFMVDGTTTEATNPAEIWPDFIARLPESLPVTVVRNKADITGETRGVEEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG+E L + +KS +      +     + +RHL  L     +LE            
Sbjct: 358 SARTGEGIENLRDHLKSSM-GFSGNMEGGFLARRRHLQALELAATHLEQGKHQLLAAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|283787594|ref|YP_003367459.1| tRNA modification GTPase [Citrobacter rodentium ICC168]
 gi|282951048|emb|CBG90726.1| probable tRNA modification GTPase [Citrobacter rodentium ICC168]
          Length = 454

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 159/458 (34%), Positives = 250/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLG-KLPRPRYADYLPFKDADGAA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNEVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P  +    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPVEIWPDFIARLPAKLPITVVRNKADITGEALGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +L+            
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLQQGKGQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|146309632|ref|YP_001190097.1| tRNA modification GTPase TrmE [Pseudomonas mendocina ymp]
 gi|166234810|sp|A4Y199|MNME_PSEMY RecName: Full=tRNA modification GTPase mnmE
 gi|145577833|gb|ABP87365.1| tRNA modification GTPase trmE [Pseudomonas mendocina ymp]
          Length = 455

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 166/459 (36%), Positives = 254/459 (55%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH ++TI AV+T      + I+R+SGP   Q+ + IC+++   PR A    F+G     
Sbjct: 1   MNHARDTIAAVATAQGRGGVGIVRVSGPLSGQLAQAICRREL-KPRFAHHGPFYGEQELP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL I FP P SFTGED  E   HGG  V++ +L    ++   RLA PGEFS RAF N
Sbjct: 60  LDEGLAIYFPGPNSFTGEDVLELQGHGGPVVLDLLLRRCLEL-GARLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + GE S       + L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSKRVHALTESLIQLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL+ +  ++ D+S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLSQLDGVRADLSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+TDD VE+ G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDQVERIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLY-------STYTEEYDHL 342
            +LL+ +  + +               P       I  K+DL        ++        
Sbjct: 298 RVLLVVDSTAPEAADPFALWPEFLEQRPDPARVTLIRNKADLSGEAVTLQTSADGHVTLS 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ + +GLE L   +K+ +  + +       + +RHL  L Q  +YLE         G 
Sbjct: 358 LSAKSADGLELLREHLKACMGYQ-QTAESGFSARRRHLEALHQAEQYLEHGRNQLTLMGA 416

Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LR+A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 GELLAEDLRMAQQALGEITGAFSSDDLLGRIFSSFCIGK 455


>gi|307133252|ref|YP_003885268.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Dickeya
           dadantii 3937]
 gi|306530781|gb|ADN00712.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Dickeya
           dadantii 3937]
          Length = 454

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG +   V + +   K P PR A    F   DG +
Sbjct: 1   MSHT-DTIVAQATPPGRGGVGILRISGRTAAAVAQAVLG-KLPKPRYADYLPFHDADGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P++R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPDVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRIHQLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAMLNDVIGDLGAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYDHLI------ 343
            +L + +  +   +             PK +    +  K+D+        D         
Sbjct: 298 RVLFMVDGTTTDAMEPAAIWPEFMARLPKTLPITVVRNKADVTGEPLGIEDVNTYSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TG+G++ L + +K  +            + +RHL  L Q  ++L+            
Sbjct: 358 SARTGDGVDLLRDHLKQSM-GFTSNTEGGFLARRRHLQALEQAAQHLQQGHEQLVGAYAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|156936085|ref|YP_001440001.1| tRNA modification GTPase TrmE [Cronobacter sakazakii ATCC BAA-894]
 gi|166200478|sp|A7MN03|MNME_ENTS8 RecName: Full=tRNA modification GTPase mnmE
 gi|156534339|gb|ABU79165.1| hypothetical protein ESA_03979 [Cronobacter sakazakii ATCC BAA-894]
          Length = 454

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/458 (34%), Positives = 244/458 (53%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P  R A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRVSGQQARNVAQAVLG-KLPKARYADYLPFKDADGTA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +                 P  +    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ T EG++ L N +K  +      +     + +RHL  L     +L+            
Sbjct: 358 SARTNEGVDVLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|262167093|ref|ZP_06034808.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
           RC27]
 gi|262024479|gb|EEY43165.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
           RC27]
          Length = 453

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/455 (34%), Positives = 244/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+
Sbjct: 2   TTDTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSADLQTIIDNLVAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVL 299

Query: 304 LLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            + +         ++I        P+NI    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G++ L   +K  +            + +RHL  L +   +L +     E     +I+
Sbjct: 360 TGQGVDALRQHLKECM-GFSGNQEGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|226326927|ref|ZP_03802445.1| hypothetical protein PROPEN_00787 [Proteus penneri ATCC 35198]
 gi|225204764|gb|EEG87118.1| hypothetical protein PROPEN_00787 [Proteus penneri ATCC 35198]
          Length = 454

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 162/456 (35%), Positives = 247/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H  +TI A +T      + I+R+SGP    V + +   K P PR A    F   D  +LD
Sbjct: 2   HSTDTIVAQATPPGRGGVGILRVSGPKAALVAQTVLG-KLPKPRYADYLPFRNDDNSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP+P SFTGED  E   HGG  +++ +L+ + ++P +R+ANPGEFS RAF N K
Sbjct: 61  QGIALFFPNPNSFTGEDVLELQGHGGPVILDLLLKRILQIPGVRIANPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  SS   + ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAINSLQGAFSSHVNEMVESLTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S   +   +  +  ++    +Q + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGIIEGKLNAVIAELDDVRAQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRV 299

Query: 303 LLLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SS 345
           L +      +  + ++I        P  +    I  KSDL     E            S+
Sbjct: 300 LFMVDSTTTDATTPEDIWPEFMARLPNTLPVTVIRNKSDLTGENAEITAQGNYPMIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
             G G+E L + +K  +            + +RHL  L+    +L+            ++
Sbjct: 360 RDGMGIELLRDHLKEAM-GFNSNTEGGFLARRRHLQALNTAAEHLQQGHEQLVYAKSGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|205829218|sp|A5F485|MNME_VIBC3 RecName: Full=tRNA modification GTPase mnmE
          Length = 453

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/455 (34%), Positives = 245/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+
Sbjct: 2   TTDTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVL 299

Query: 304 LLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            + +         ++I        P+NI    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G++ L   +K  +            + +RHL  L +   +L +     E     +I+
Sbjct: 360 TGQGVDALRQHLKECM-GFSGNQEGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|260774545|ref|ZP_05883458.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio metschnikovii
           CIP 69.14]
 gi|260610451|gb|EEX35657.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio metschnikovii
           CIP 69.14]
          Length = 453

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 160/455 (35%), Positives = 243/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP    V + +       PR A    F   DG  LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPQAAFVAKQVTGM-DLKPRYAKYLPFKDADGAELDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +P LR A PGEFS RAF N K+
Sbjct: 61  GIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILAIPGLRPARPGEFSERAFLNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEQAAKSALQSLQGQFSKRINTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ KD
Sbjct: 180 IDFLADGKVSADLQAIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKD 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E++ AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWEEIKQADRVL 299

Query: 304 LLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            + +         K+I        P  +    I  K D           ++     +S+ 
Sbjct: 300 FMVDGTTTEATDPKDIWPDFVDRLPDQMGMTVIRNKVDQTGETLGVCHASQPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G+E L   +K  +            + +RHL  L +   +L +     E     +I+
Sbjct: 360 TGQGVEALRTHLKECM-GFTGNQEGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|229515956|ref|ZP_04405413.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TMA
           21]
 gi|229347056|gb|EEO12018.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TMA
           21]
          Length = 453

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 159/455 (34%), Positives = 244/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+
Sbjct: 2   TTDTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVL 299

Query: 304 LLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSF 346
            + +         ++I        P+NI    I  K+D      E            S+ 
Sbjct: 300 FMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLEICHVNQPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G++ L   +K  +            + +RHL  L +   +L +     E     +I+
Sbjct: 360 TGQGVDALRQHLKECM-GFSGNQEGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|304398073|ref|ZP_07379948.1| tRNA modification GTPase TrmE [Pantoea sp. aB]
 gi|304354359|gb|EFM18731.1| tRNA modification GTPase TrmE [Pantoea sp. aB]
          Length = 454

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/458 (34%), Positives = 246/458 (53%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V   +   K P PR A    F   DG +
Sbjct: 1   MSH-SDTIVAQATPPGRGGVGILRVSGAQAAEVARQLLG-KLPKPRYADYLPFTDSDGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSTRINHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S   +   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGRIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLI------ 343
            +L + +  +                 P  +    +  K+D+ S      +         
Sbjct: 298 RVLFMVDGTTTDATEAAAIWPDFVSRLPPELPITVVRNKADVTSEPPGLTEINGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ T EG++EL + +K  +      +     + +RHL  L     +L+            
Sbjct: 358 SARTSEGVDELRDHLKQSM-GFAGNMEGGFLARRRHLQALELAAMHLQQGRAQLLGARAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRVAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|257871382|ref|ZP_05651035.1| tRNA modification GTPase mnmE [Enterococcus gallinarum EG2]
 gi|257805546|gb|EEV34368.1| tRNA modification GTPase mnmE [Enterococcus gallinarum EG2]
          Length = 465

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 154/463 (33%), Positives = 243/463 (52%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFGLD 57
           +  E +TI A+ST     AISI+RLSG     + + +    KKK       ++ Y    D
Sbjct: 4   ITQEFDTIAAISTPPGEGAISIVRLSGEQAISIADAVFQSGKKKLIDVSSHTIHYGHIFD 63

Query: 58  GR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                ++D+ ++ +   P++FT ED  E + HGGI VVN IL+ L      RLA PGEF+
Sbjct: 64  PEKYQMMDEVMVSIMRKPKTFTREDIVEINCHGGIVVVNQILQ-LVLRQGARLAEPGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS L  Q   ++    + +E 
Sbjct: 123 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAINQLDGNLSRLIRQLRQEILETLAQVEV 182

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  +++ +L     ++  I + +   + G+I+R G    I+G  N GKSS
Sbjct: 183 NIDYPEYDDVEELTTRLLLEKANQVQKQIQALLQTAQQGKILREGLSTAIIGRPNVGKSS 242

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVEK G++R+  
Sbjct: 243 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLVDTAGIRETEDIVEKIGVERSRK 302

Query: 295 EVENADLILLL--------------KEINSK-KEISFPKNIDFIFIGTKSDLYSTYTEEY 339
            +  ADLILL+               +I S  K I      D      + DL      E 
Sbjct: 303 ALSEADLILLVLNQSESLTTEDKQLLDITSGNKRIILLNKTDLPSRINQEDLVPYLENEP 362

Query: 340 DHLISSFTGEGLEELINKIKSILSNKF-KKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397
              IS  T EGL++L   I  +           S  S+ RH+  L +    L E+    E
Sbjct: 363 ALPISVLTSEGLDQLEQAIADLFFGGNTGDKDASYLSNTRHIALLEKAEHSLAEVIQGIE 422

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 423 SGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|59710609|ref|YP_203385.1| tRNA modification GTPase TrmE [Vibrio fischeri ES114]
 gi|197334085|ref|YP_002154774.1| tRNA modification GTPase TrmE [Vibrio fischeri MJ11]
 gi|81311054|sp|Q5E8Z9|MNME_VIBF1 RecName: Full=tRNA modification GTPase mnmE
 gi|59478710|gb|AAW84497.1| tRNA modification GTPase TrmE [Vibrio fischeri ES114]
 gi|197315575|gb|ACH65022.1| tRNA modification GTPase TrmE [Vibrio fischeri MJ11]
          Length = 455

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 159/458 (34%), Positives = 246/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI A +T      + IIR+SGP    V   +  K+   PR A    F   +G  
Sbjct: 1   MTLHTDTIVAQATAPGRGGVGIIRVSGPKAKDVALAVIGKEL-KPRYAEYAPFKDENGLE 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP+P SFTGED  E   HGG  V++ +++ + K+  +R A PGEFS RAF N
Sbjct: 60  LDQGIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILKIDGIRTARPGEFSERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + ++  + G  S+     ++ L ++R ++EA +DF E
Sbjct: 120 DKMDLAQAEAIADLIDASSEEAAKSALNSLQGVFSNKINTLVESLIYLRIYVEAAIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+
Sbjct: 180 -EEIDFLADGKVSGDLQGIIDNLNAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALS 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            KD AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+  AD
Sbjct: 239 GKDTAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWDEIAQAD 298

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST------YTEEYDHLI 343
            +L + +  +                 PKN+    I  K+D            +     +
Sbjct: 299 RVLFMVDGTTTDATDPKLIWPEFLDRLPKNMGMTVIRNKADQTGEDLGICHVNDPTLIRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           S+ TGEG++ L N +K  +            + +RHL  L +  ++L++     E     
Sbjct: 359 SAKTGEGVDALRNHLKECM-GFSGNQEGGFMARRRHLEALEKAAQHLDIGQQQLEGYMAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I+AE LR+A   L +ITG    + LL  IF+ FCIGK
Sbjct: 418 EILAEELRIAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|300725383|ref|YP_003714722.1| GTPase [Xenorhabdus nematophila ATCC 19061]
 gi|297631939|emb|CBJ92664.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Xenorhabdus nematophila ATCC 19061]
          Length = 454

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 161/458 (35%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      + I+R+SG    +V E +   K P PR A    F  +DG +
Sbjct: 1   MNTT-DTIVAQATPPGRGGVGILRISGRKAAEVAEVVLG-KLPKPRYADYLPFRDMDGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+++ FP P SFTGED  E   HGG  +++ +L+ +  +  +R+ANPGEFS RAF N
Sbjct: 59  LDQGIVLYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTISGVRIANPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R +M  + G  S    Q ++ LT++R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAMNSLQGTFSHQVHQMVETLTNLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  ++ +  SQ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAKLDEVIAELDNVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLI 343
            +L + +  +   I             P ++    I  K+D+    T   D        +
Sbjct: 298 RVLFMVDSTTTDAIEPAQIWPEFMAKLPASLPVTVIRNKTDMTGEATGVSDVSGYSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+  G+G++ L + +K  +      +     + +RHL  L+    +L+            
Sbjct: 358 SAREGKGIDLLRDHLKETM-GFNSNIEGGFLARRRHLQALNTAADHLQEGHQQLVFARSG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|312112752|ref|YP_003991068.1| tRNA modification GTPase TrmE [Geobacillus sp. Y4.1MC1]
 gi|311217853|gb|ADP76457.1| tRNA modification GTPase TrmE [Geobacillus sp. Y4.1MC1]
          Length = 461

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 151/461 (32%), Positives = 247/461 (53%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL----- 56
           E +TI A+ST     AI+I+RLSG     + + + K    K      S    +G      
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDEAIAIADRVFKSPSGKRLKDVPSHTIHYGHIVDPN 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G+ +++ ++ V  +P++FT ED  E + HGG+  VN +L+ L      RLA PGEF++R
Sbjct: 62  SGQTVEEAMVSVMRAPKTFTREDVVEINCHGGLVSVNRVLQ-LVLTNGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    ++++ M G LS    +    +    + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKRIRELRQAILETLAHVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +D++  +   ++    +++  I   +   + G+I+R G   VI+G  N GKSSL 
Sbjct: 181 DYPEYDDIEEMTPHLLMEKAQYVREQIEKLLQTAQQGKILREGLATVIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R++  +
Sbjct: 241 NALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGVERSWQML 300

Query: 297 ENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDH 341
           + ADLILL+           +K     K +DFI I  K+DL                   
Sbjct: 301 KEADLILLVLNYHEPLTAEDEKLFDMVKGMDFIVIVNKTDLPQHIDMDRVKQLAGGRPII 360

Query: 342 LISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S    +G+E+L   I ++      +    +  S+ RH+  L Q  + +E A S  E  
Sbjct: 361 TTSLLHEKGIEDLETAISNMFFSGAVEAGDLTYVSNSRHIALLQQAKKAVEDAISGIESG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  +L  A   LG+I G    E L+D +FS+FC+GK
Sbjct: 421 MPVDLVQIDLTRAWELLGEIIGDTVHESLIDQLFSQFCLGK 461


>gi|327482910|gb|AEA86220.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri DSM 4166]
          Length = 455

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 163/459 (35%), Positives = 251/459 (54%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   ++TI AV+T      + IIR+SGP    +   +  ++ P PR A    F   DG +
Sbjct: 1   MIPARDTIAAVATAPGRGGVGIIRVSGPRARAIAITLSGRE-PTPRHAHYGPFHADDGEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GLL+ FP P SFTGED  E H HGG  V++ +L+   ++  +RLA PGEFS RAF N
Sbjct: 60  IDEGLLLFFPGPHSFTGEDVLELHGHGGPVVLDMLLQRCVEL-GVRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + GE S    Q  ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNAVRSLQGEFSRRVHQLTERLIQLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLAQLDGVRTELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+T+D VE+ G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLRDTEDQVERIGVQRALSAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY-------TEEYDHL 342
            ILL+ + ++ +               P+      I  K+DL             +    
Sbjct: 298 RILLVVDASAPEASDPSALWPEFLDFSPEPGKVTLIRNKADLTGEAIVLRCDNDGQATLS 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           + + +GEGLE L   +K  +    +    S  + +RHL  L     +L          G 
Sbjct: 358 LCARSGEGLELLREHLKHCM-GYEQTAESSFSARRRHLDALRLADEHLRHGHDQLTLAGA 416

Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LRLA  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 GELLAEDLRLAQQALGEITGAFSSDDLLGRIFSSFCIGK 455


>gi|269103815|ref|ZP_06156512.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163713|gb|EEZ42209.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 455

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 243/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      + IIR+SGP   +V   +  ++   PR A    F   DG  
Sbjct: 1   MNQHTDTIVAQATPPGRGGVGIIRVSGPKAKEVALAVAGREL-RPRYAEYLPFKNEDGTA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F  P SFTGED  E   HGG  +++ ++  +  +  +R A PGEFS RAF N
Sbjct: 60  LDQGIALFFKGPNSFTGEDVLELQGHGGPVLMDMLIRRILTLDGIRPARPGEFSERAFMN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + + + + G  S+   + ++ L ++R ++EA +DF E
Sbjct: 120 DKLDLAQAEAIADLIDASSEEAAKSAFQSLQGAFSTRVNELVESLIYLRMYVEAAIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  +V  D+  + + + +   +   G I+R G K+VI G  NAGKSSL NAL+
Sbjct: 180 -EEIDFLSDGKVSGDLNRIIDRLEAVRKEANQGSIMREGMKVVIAGRPNAGKSSLLNALS 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            KD AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+  AD
Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWDEILQAD 298

Query: 301 LILLLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLI 343
            +L +      +    KEI        P+N+    I  K +L                 +
Sbjct: 299 RVLFMVDGTTTDATDPKEIWPDFIERLPENMGLTVIRNKIELTGEQAGICHVNNPTLIRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
           S+ TGEG++ L   +K  +            + +RHL  L +   +LE+  S  E     
Sbjct: 359 SALTGEGVDSLRQHLKECM-GFSGTTEGGFMARRRHLDALERAAEHLEIGKSQLEGYMAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I+AE LRLA   L +ITG    + LL  IF+ FCIGK
Sbjct: 418 EILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|209693636|ref|YP_002261564.1| tRNA modification GTPase TrmE [Aliivibrio salmonicida LFI1238]
 gi|208007587|emb|CAQ77687.1| probable tRNA modification GTPase [Aliivibrio salmonicida LFI1238]
          Length = 455

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 159/458 (34%), Positives = 243/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI A +T      + IIR+SGP   QV   +   K   PR A    F   +G  
Sbjct: 1   MTLHTDTIVAQATAPGRGGVGIIRVSGPKAQQVALEVVG-KTLKPRYAEYTPFKDDNGLE 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP+P SFTGED  E   HGG  V++ +++ + K+  +R A PGEFS RAF N
Sbjct: 60  LDQGIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILKIEGIRTARPGEFSERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + ++  + G  S      ++ L ++R ++EA +DF E
Sbjct: 120 DKMDLAQAEAIADLIDASSEEAAKSALNSLQGVFSRKINTLVESLIYLRIYVEAAIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+
Sbjct: 180 -EEIDFLADGKVSGDLQGIIDNLNAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALS 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            KD AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+  AD
Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIAQAD 298

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST------YTEEYDHLI 343
            +L + +  +                 PKN+    I  K+D            +     +
Sbjct: 299 RVLFMVDGTTTDATDPKVIWPEFLDRLPKNMGMTVIRNKADQTGENLGICHVNDPTLIRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           S+ TGEG++ L   +K  +            + +RHL  L +   +L++     E     
Sbjct: 359 SAKTGEGVDALRLHLKECM-GFSGNQEGGFMARRRHLEALEKASEHLDIGQQQLEGYMAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I+AE LR+A   L +ITG    + LL  IF+ FCIGK
Sbjct: 418 EILAEELRIAQQHLSEITGEFSSDDLLGRIFTSFCIGK 455


>gi|322835121|ref|YP_004215148.1| tRNA modification GTPase TrmE [Rahnella sp. Y9602]
 gi|321170322|gb|ADW76021.1| tRNA modification GTPase TrmE [Rahnella sp. Y9602]
          Length = 454

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 159/456 (34%), Positives = 251/456 (55%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      + I+R+SG +   V + +   K P PR A    F   DG  LD
Sbjct: 2   STSDTIIAQATPPGRGGVGILRISGRAARDVAQAVLG-KLPKPRYADYLPFQDADGSTLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  + N+R+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIIALENVRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAVNSLQGAFSNRIHHLVEALTHLRIFVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAKLNTVMGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L+G  + I DTAG+RE  D VE+ GI+R + E+E ADL+
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADLV 299

Query: 303 LLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTEEYD------HLISS 345
           L + +  + +               P ++  + +  K+D+      + +        +S+
Sbjct: 300 LFMVDGTTTEATEPADIWPEFMARLPASLPIVVVRNKADITGEALGQTEVNGHSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TG+G++ L + +K ++      +     + +RHL  L Q  ++L             ++
Sbjct: 360 RTGDGVDLLRDHLKQVM-GFNHNMEGGFLARRRHLQALEQAAQHLVQGKDQLLGAWAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|253991869|ref|YP_003043225.1| tRNA modification GTPase TrmE [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783319|emb|CAQ86484.1| trna modification gtpase trme [Photorhabdus asymbiotica]
          Length = 454

 Score =  448 bits (1152), Expect = e-124,   Method: Composition-based stats.
 Identities = 166/458 (36%), Positives = 255/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      + I+R+SGP   QV E +   K P PR A    F  +D R+
Sbjct: 1   MNTT-DTIVAQATPPGRGGVGILRVSGPKAAQVAEVVLG-KLPKPRYADYLPFRDVDNRV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ I FP P SFTGED  E   HGG  +++ +L+ +  +P +R+ANPGEFS RAF N
Sbjct: 59  LDQGIAIYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIANPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R +M  + G  S+   Q ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTQVHQMVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++  ++  +   +    SQ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEANLDNVIAKLDRVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLI 343
            +L + +  +   +             P+++    +  K+D+ +  T   +        +
Sbjct: 298 RVLFMVDSTTTDAVEPVEIWPEFMARLPESLPITVVRNKTDMTNEETSITEVRGYSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ +GEG++ L + +K  +            + +RHL  L+    +L+            
Sbjct: 358 SAHSGEGIDLLRDHLKETM-GFNSNTEGGFLARRRHLQALNTAAEHLQQGHEQLVVARSG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQTLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|146284521|ref|YP_001174674.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri A1501]
 gi|166234812|sp|A4VS81|MNME_PSEU5 RecName: Full=tRNA modification GTPase mnmE
 gi|145572726|gb|ABP81832.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri A1501]
          Length = 455

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 162/459 (35%), Positives = 250/459 (54%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   ++TI AV+T      + I+R+SGP    +   +  ++ P PR A    F   DG +
Sbjct: 1   MIPARDTIAAVATAPGRGGVGIVRVSGPRARAIAITLSGRE-PTPRHAHYGPFHADDGEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GLL+ FP P SFTGED  E H HGG  V++ +L+    +  +RLA PGEFS RAF N
Sbjct: 60  IDEGLLLFFPGPHSFTGEDVLELHGHGGPVVLDMLLQRCVDL-GVRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + GE S    Q  ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNAVRSLQGEFSRRVHQLTERLIQLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLAQLDGVRTELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+T+D VE+ G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLRDTEDQVERIGVQRALSAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY-------TEEYDHL 342
            ILL+ + ++ +               P+      I  K+DL             +    
Sbjct: 298 RILLVVDASAPEASDPSALWPEFLDFSPEPGKVTLIRNKADLTGEAIVLRCDNDGQATLS 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           + + +GEGLE L   +K  +    +    S  + +RHL  L     +L          G 
Sbjct: 358 LCARSGEGLELLREHLKHCM-GYEQTAESSFSARRRHLDALRLADEHLRHGHDQLTLAGA 416

Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LRLA  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 GELLAEDLRLAQQALGEITGAFSSDDLLGRIFSSFCIGK 455


>gi|86147167|ref|ZP_01065483.1| tRNA modification GTPase [Vibrio sp. MED222]
 gi|85835051|gb|EAQ53193.1| tRNA modification GTPase [Vibrio sp. MED222]
          Length = 453

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 161/455 (35%), Positives = 244/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   QV   +   K   PR A    F   +G  LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPQAAQVALEVTG-KVLKPRYAEYLPFKSHNGTELDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+
Sbjct: 61  GIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILSISGVRAARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S      +D L ++R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEEAAKSALQSLQGEFSKRINTLVDSLIYLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSTDLQAIIDNLEAVRQEANQGSIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIERAWEEIAQADRVL 299

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    K+I        P NI    I  K+D  S         +     +S+ 
Sbjct: 300 FMVDGTTTDATDPKDIWPDFVDRLPNNIGMTVIRNKADQTSEELGICHVNDPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G++ L + +K  +            + +RHL  L +   +L++     E     +I+
Sbjct: 360 TGQGVDALRSHLKDCM-GFAGGHEGGFMARRRHLDALERASEHLDIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|292901145|ref|YP_003540514.1| tRNA modification GTPase [Erwinia amylovora ATCC 49946]
 gi|291200993|emb|CBJ48132.1| probable tRNA modification GTPase [Erwinia amylovora ATCC 49946]
          Length = 454

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/458 (36%), Positives = 251/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH  +TI A +T      + I+R+SG    +V + +   K P PR A    F   DG  
Sbjct: 1   MNH-SDTIVAQATPPGRGGVGILRVSGNKAARVAQLLLG-KLPKPRHADYLPFCDADGST 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+ANPGEFS RAF N
Sbjct: 59  LDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  S+ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLHQVIADLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIQIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 297

Query: 301 LILLLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD------HLI 343
            +L +      +     EI        P+ +    +  K+D+     E  +        +
Sbjct: 298 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIREISEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG+E L N +K +       +     + +RHL  L     +L+            
Sbjct: 358 SARTGEGIENLRNHLK-LSMGWHGSMEGGFLARRRHLQALELAATHLQQGKHQLLAARAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|260771040|ref|ZP_05879968.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio furnissii CIP
           102972]
 gi|260613929|gb|EEX39120.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio furnissii CIP
           102972]
 gi|315178633|gb|ADT85547.1| tRNA modification GTPase trmE [Vibrio furnissii NCTC 11218]
          Length = 453

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 159/455 (34%), Positives = 244/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   +V   +  +    PR A    F    G  LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPKATEVALAVTGRTL-KPRYAEYLPFKTESGVELDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +P +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILMIPGVRPARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEEAAKSALKSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSGDLQAIIDNLNAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIERAWDEIAQADRVL 299

Query: 304 LLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            + +         K+I        P ++    I  K D            +     +S+ 
Sbjct: 300 FMVDGTTTSATDPKDIWPDFVDRLPDSMGMTVIRNKVDQTGETLGICHVNQPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TGEG++ L + +K+ +            + +RHL  L +   +L +     E     +I+
Sbjct: 360 TGEGVDALRSHLKACM-GFTGNQEGGFMARRRHLDALERAAEHLSIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRLAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|295402127|ref|ZP_06812086.1| tRNA modification GTPase TrmE [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294975810|gb|EFG51429.1| tRNA modification GTPase TrmE [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 461

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 151/461 (32%), Positives = 246/461 (53%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL----- 56
           E +TI A+ST     AI+I+RLSG     + + + K    K      S    +G      
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDEAIAIADRVFKSPSGKRLKDVPSHTIHYGHIVDPN 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G+ +++ ++ V  +P++FT ED  E + HGG+  VN +L+ L      RLA PGEF++R
Sbjct: 62  SGQTVEEAMVSVMRAPKTFTREDVVEINCHGGLVSVNRVLQ-LVLTNGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    ++++ M G LS    +    +    + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGHLSKRIRELRQAILETLAHVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +D++  +   ++    +++  I   +   + G+I+R G   VI+G  N GKSSL 
Sbjct: 181 DYPEYDDIEEMTPHLLMEKAQYVREQIEKLLQTAQQGKILREGLATVIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGVERSRQML 300

Query: 297 ENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDH 341
           + ADLILL+           +K     K +DFI I  K+DL                   
Sbjct: 301 KEADLILLVLNYHEPLTAEDEKLFDMVKGMDFIVIVNKTDLPQHIDMDRVKQLAGGRPII 360

Query: 342 LISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S    +G+E+L   I ++      +    +  S+ RH+  L Q  + +E A S  E  
Sbjct: 361 TTSLLHEKGIEDLETAISNMFFSGAVEAGDLTYVSNSRHIALLQQAKKAVEDAISGIESG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  +L  A   LG+I G    E L+D +FS+FC+GK
Sbjct: 421 MPVDLVQIDLTRAWELLGEIIGDTVHESLIDQLFSQFCLGK 461


>gi|294638333|ref|ZP_06716586.1| tRNA modification GTPase TrmE [Edwardsiella tarda ATCC 23685]
 gi|291088586|gb|EFE21147.1| tRNA modification GTPase TrmE [Edwardsiella tarda ATCC 23685]
          Length = 455

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 252/458 (55%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI A +T      + I+R+SGP    V + +   K P PR A    F   DG +
Sbjct: 1   MITPSDTIVAQATAPGRGGVGILRVSGPQAQAVAQALLG-KLPKPRYADYLPFRDQDGTL 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ + ++P LR+A PGEFS RAF N
Sbjct: 60  LDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILQLPGLRIARPGEFSERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +
Sbjct: 120 DKMDLAQAEAIADLIDASSEQAARSAVNSLQGVFSARVNQLVESLTHLRIYVEAAIDFPD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  + ++++   ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 180 -EEIDFLSDGKIEAQLNAVMHELADVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 239 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 298

Query: 301 LILLLKE-----------INSKKEISFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +           I        P ++    +  K+D+       ST        +
Sbjct: 299 RVLFMVDGTTTDATDPATIWPDFIARLPASLPITVVRNKADVTGEPLGISTSHGHTLVRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402
           S+ TG G++ L + +K  +  +   L     + +RHL  L Q   +L+            
Sbjct: 359 SARTGAGIDVLRDHLKQSMGFE-THLEGGFLARRRHLQALEQAAIHLQQGKDQLLGAMAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IF+ FCIGK
Sbjct: 418 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|256158560|ref|ZP_05456450.1| tRNA modification GTPase TrmE [Brucella ceti M490/95/1]
 gi|256253969|ref|ZP_05459505.1| tRNA modification GTPase TrmE [Brucella ceti B1/94]
 gi|261221111|ref|ZP_05935392.1| tRNA modification GTPase mnmE [Brucella ceti B1/94]
 gi|265997072|ref|ZP_06109629.1| tRNA modification GTPase mnmE [Brucella ceti M490/95/1]
 gi|260919695|gb|EEX86348.1| tRNA modification GTPase mnmE [Brucella ceti B1/94]
 gi|262551540|gb|EEZ07530.1| tRNA modification GTPase mnmE [Brucella ceti M490/95/1]
          Length = 442

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 205/437 (46%), Positives = 297/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+G
Sbjct: 8   HDTIFALSSGRLPSGVAVIRISGPKTRFVYETICQ-AIPEPRHAALLTFRSRNGDAIDRG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+D
Sbjct: 67  LTLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV
Sbjct: 127 LTIAEGLADLIAAETEGQRRLAMQVASGNQCKLYSEWRQRLINARAFIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DV
Sbjct: 187 PGSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L 
Sbjct: 247 AIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLS 306

Query: 305 LKEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++   
Sbjct: 307 LEDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAE 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG V
Sbjct: 367 AKIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDV 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE++LD+IFS+FCIGK
Sbjct: 426 DVEEILDVIFSQFCIGK 442


>gi|90961107|ref|YP_535023.1| tRNA modification GTPase TrmE [Lactobacillus salivarius UCC118]
 gi|227892406|ref|ZP_04010211.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ATCC 11741]
 gi|122449446|sp|Q1WVH7|MNME_LACS1 RecName: Full=tRNA modification GTPase mnmE
 gi|90820301|gb|ABD98940.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Lactobacillus salivarius UCC118]
 gi|227865813|gb|EEJ73234.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ATCC 11741]
          Length = 464

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/461 (32%), Positives = 240/461 (52%), Gaps = 24/461 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
             E +TI A+ST     AISI+RLSG    ++   + K K    +  +    +G      
Sbjct: 6   PTEFDTIAAISTPPGEGAISIVRLSGEDAVKIANKVFKGKN-LEKVPTHTINYGHIVNPK 64

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
               LD+ ++ V  +P +FT ED  E + HGGI   N IL+ L      RLA PGEF++R
Sbjct: 65  TNEELDEVMVSVMLAPRTFTREDVIEINCHGGIVPTNQILQ-LLLSNGARLAEPGEFTKR 123

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF +G+IDL +AES+ DLI ++T+   ++++  + G LS L       +  + + +E ++
Sbjct: 124 AFLHGRIDLTQAESVMDLIRAKTDRSMKVALNQLDGNLSHLIRNLRQDILDVLAQVEVNI 183

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +    + +K  I   ++  K G+++R G    I+G  N GKSSL 
Sbjct: 184 DYPEYDDVETLTTKMLREKAIEVKKSIQQLLTTAKQGKVLREGLATAIVGRPNVGKSSLL 243

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D VE+ G++R+   +
Sbjct: 244 NHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDKVERIGVERSRKAI 303

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDH 341
           E ADL++L+   +       K+ I        I I  K+DL              E+   
Sbjct: 304 EQADLVMLVLNASEELTDEDKELIQATSGKKRIVILNKTDLPQKLNMDEVRELVPEDELI 363

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S     G+++L  KI  +     +    +I  ++ RH+  L+Q    L+      +  
Sbjct: 364 TTSVLKKTGVDKLEEKIAELFFGGIENSQSTIMVTNARHIALLNQAEDSLDAVLQGLDSG 423

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D+   ++  A   LG+ITG    ++LL  +FS+FC+GK
Sbjct: 424 MPVDLCQIDMTNAWDELGEITGDSYQDELLTQLFSQFCLGK 464


>gi|157368276|ref|YP_001476265.1| tRNA modification GTPase TrmE [Serratia proteamaculans 568]
 gi|166991115|sp|A8G7P7|MNME_SERP5 RecName: Full=tRNA modification GTPase mnmE
 gi|157320040|gb|ABV39137.1| tRNA modification GTPase TrmE [Serratia proteamaculans 568]
          Length = 454

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 245/456 (53%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      + I+R+SG     V + +   K P PR A    F    G  LD
Sbjct: 2   STTDTIVAQATPPGRGGVGILRISGRGAKDVAQALLG-KLPKPRYADYLPFRDAAGATLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K
Sbjct: 61  QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGMRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R +M  + G  S+   Q ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTRIHQLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+ S  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNGVMADLDSVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRV 299

Query: 303 LLLKE-----INSKKEI------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +          EI        P  +    +  K+D+       +         +S+
Sbjct: 300 LFMVDGTTTAATEPAEIWPEFMARLPHRLPITVVRNKADITGETLGMTEVNGHSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L + +K  +      +     + +RHL  L Q  ++L             ++
Sbjct: 360 RTGEGIDLLRDHLKQSM-GFTSNMEGGFLARRRHLQALEQAAQHLVEGKEQLVSAYAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|297581962|ref|ZP_06943882.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae RC385]
 gi|297533829|gb|EFH72670.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae RC385]
          Length = 464

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 157/457 (34%), Positives = 244/457 (53%), Gaps = 21/457 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
               +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ L
Sbjct: 11  TMTTDTIVAQATALGRGGVGIIRVSGPLSAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQL 69

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS  AF N 
Sbjct: 70  DQGIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSEHAFLND 129

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E 
Sbjct: 130 KMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE- 188

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E++   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ 
Sbjct: 189 EEIDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSG 248

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           K+ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD 
Sbjct: 249 KESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADR 308

Query: 302 ILLLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLIS 344
           +L + +         ++I        P+NI    I  K+D            +     +S
Sbjct: 309 VLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLS 368

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TG+G++ L   +K  +            + +RHL  L +   +L +     E     +
Sbjct: 369 AKTGQGVDALRQHLKECM-GFSGNQEGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGE 427

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 428 ILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464


>gi|149190487|ref|ZP_01868758.1| tRNA modification GTPase TrmE [Vibrio shilonii AK1]
 gi|148835741|gb|EDL52707.1| tRNA modification GTPase TrmE [Vibrio shilonii AK1]
          Length = 474

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 162/457 (35%), Positives = 245/457 (53%), Gaps = 21/457 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
               +TI A +T      + IIR+SGP   +V   +   K   PR A    F   DG  L
Sbjct: 21  TMTTDTIVAQATAPGRGGVGIIRVSGPLAAEVALQVTG-KTLKPRYADYLPFKAQDGSEL 79

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+G+ + FP+P SFTGED  E   HGG  V++ +++ +  +P +R A PGEFS RAF N 
Sbjct: 80  DQGIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILLIPGVRPARPGEFSERAFLND 139

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF E 
Sbjct: 140 KMDLTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIQVLVESLIHLRIYVEAAIDFPE- 198

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E++   +  +V  D+  + +++ S   +   G I+R G K+VI G  NAGKSSL NAL+ 
Sbjct: 199 EEIDFLADGKVAGDLQHIIDNLESVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSG 258

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           K+ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD 
Sbjct: 259 KESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWEEIEQADR 318

Query: 302 ILLLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLIS 344
           +L +      +    KEI        P +I    I  K D            +     +S
Sbjct: 319 VLFMVDGTTTDATDPKEIWPDFIDRLPSSIGITVIRNKVDETGETLGICHVNDPTLIRLS 378

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TG+G+  L   +K+I+            + +RHL  L +   +L++     E     +
Sbjct: 379 ARTGKGVPALREHLKAIM-GFSGANEGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGE 437

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 438 ILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 474


>gi|311281727|ref|YP_003943958.1| tRNA modification GTPase TrmE [Enterobacter cloacae SCF1]
 gi|308750922|gb|ADO50674.1| tRNA modification GTPase TrmE [Enterobacter cloacae SCF1]
          Length = 454

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 248/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFNDADGAA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             P N+    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPAQIWPDFIARLPTNLPITVVRNKADMTGEAVGLSEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+  GEG++ L N +K  +      +     + +RHL  L     +L+            
Sbjct: 358 SARQGEGVDLLRNHLKQSMGFD-TNMEGGFLARRRHLQALETAANHLQQGKAQLIGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|300214038|gb|ADJ78454.1| tRNA modification GTPase mnmE [Lactobacillus salivarius CECT 5713]
          Length = 464

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/461 (32%), Positives = 240/461 (52%), Gaps = 24/461 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
             E +TI A+ST     AISI+RLSG    ++   + K K    +  +    +G      
Sbjct: 6   PTEFDTIAAISTPPGEGAISIVRLSGEDAVKIANKVFKGKN-LEKVPTHTINYGHIVNPK 64

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
               LD+ ++ V  +P +FT ED  E + HGGI   N IL+ L      RLA PGEF++R
Sbjct: 65  TNEELDEVMVSVMLAPRTFTREDVIEINCHGGIVPTNQILQ-LLLSNGARLAEPGEFTKR 123

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF +G+IDL +AES+ DLI ++T+   ++++  + G LS L       +  + + +E ++
Sbjct: 124 AFLHGRIDLTQAESVMDLIRAKTDRSMKVALNQLDGNLSHLIRNLRQDILDVLAQVEVNI 183

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +    + +K  I   ++  K G+++R G    I+G  N GKSSL 
Sbjct: 184 DYPEYDDVETLTTKMLREKAIEVKKSIQQLLTTAKQGKVLREGLATAIVGRPNVGKSSLL 243

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D VE+ G++R+   +
Sbjct: 244 NHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDKVERIGVERSRKAI 303

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDH 341
           E ADL++L+   +       K+ I        I I  K+DL              E+   
Sbjct: 304 EQADLVMLVLNASEELTDEDKELIQATSGKKRIVILNKTDLPRKLNMDEVRELVPEDELI 363

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S     G+++L  KI  +     +    +I  ++ RH+  L+Q    L+      +  
Sbjct: 364 TTSVLKKTGVDKLEEKIAELFFGGIENSQSTIMVTNARHIALLNQAEDSLDAVLQGLDSG 423

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D+   ++  A   LG+ITG    ++LL  +FS+FC+GK
Sbjct: 424 MPVDLCQIDMTNAWDELGEITGDSYQDELLTQLFSQFCLGK 464


>gi|238750293|ref|ZP_04611795.1| tRNA modification GTPase mnmE [Yersinia rohdei ATCC 43380]
 gi|238711526|gb|EEQ03742.1| tRNA modification GTPase mnmE [Yersinia rohdei ATCC 43380]
          Length = 497

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 159/456 (34%), Positives = 244/456 (53%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      + I+R+SG +   V + +   K P PR A    F  +DG  LD
Sbjct: 45  STTDTIVAQATPPGRGGVGILRVSGRAAASVAQAVLG-KLPKPRYADYLPFKDIDGSTLD 103

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 104 QGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDK 163

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF + E
Sbjct: 164 LDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPD-E 222

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 223 EIDFLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 282

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE +D VE+ GI+R + E+E AD +
Sbjct: 283 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWHEIEQADRV 342

Query: 303 LLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +                 P  +    +  K+D+       +         +S+
Sbjct: 343 LFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADVTGETLGLTEVNGHSLIRLSA 402

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +            + +RHL  L    ++L             ++
Sbjct: 403 RTGEGIDLLRNHLKQCM-GFTSNTEGGFLARRRHLQALETAAQHLVQGHEQLVSARAGEL 461

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 462 LAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 497


>gi|327395913|dbj|BAK13335.1| tRNA modification GTPase TrmE [Pantoea ananatis AJ13355]
          Length = 454

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/458 (35%), Positives = 249/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SGP   +V + I   K P PR A    F   DG +
Sbjct: 1   MSH-SDTIVAQATSPGRGGVGILRISGPRAAEVAQQILG-KLPKPRYADYLSFNDSDGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRIVALPGLRIAQPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S      ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRINHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  + +D+ +  ++ K G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEGQLNTVISDLDAVRAEAKQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 297

Query: 301 LILLLK-----EINSKKEI------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L +      +     EI        P  +    +  K+D+       +         +
Sbjct: 298 RVLFMVDGTTTDATEPAEIWPDFVARLPPQLPITVVRNKADITGEARGLTNANGHALIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ T EGL+ L + +K  +      +     + +RHL  L     +LE            
Sbjct: 358 SARTSEGLDTLRDHLKQTM-GFADNMEGGFLARRRHLQALELAATHLEQGKSQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|312174334|emb|CBX82587.1| tRNA modification GTPase trmE [Erwinia amylovora ATCC BAA-2158]
          Length = 474

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/458 (36%), Positives = 251/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH  +TI A +T      + I+R+SG    +V + +   K P PR A    F   DG  
Sbjct: 21  MNH-SDTIVAQATPPGRGGVGILRVSGNKAARVAQLLLG-KLPKPRHADYLPFCDADGST 78

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+ANPGEFS RAF N
Sbjct: 79  LDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 138

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 139 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRINHLVEALTHLRIYVEAAIDFPD 198

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  S+ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 199 -EEIDFLSDGKIEAQLHQVIADLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 257

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 258 GREAAIVTDIAGTTRDVLREHIQIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 317

Query: 301 LILLLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD------HLI 343
            +L +      +     EI        P+ +    +  K+D+     E  +        +
Sbjct: 318 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIREISEVNGHLLIRL 377

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG+E L N +K +       +     + +RHL  L     +L+            
Sbjct: 378 SARTGEGIENLRNHLK-LSMGWHGSMEGGFLARRRHLQALELAATHLQQGKHQLLAARAG 436

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 437 ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 474


>gi|292490141|ref|YP_003533036.1| tRNA modification GTPase trmE [Erwinia amylovora CFBP1430]
 gi|291555583|emb|CBA24183.1| tRNA modification GTPase trmE [Erwinia amylovora CFBP1430]
          Length = 474

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/458 (36%), Positives = 251/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH  +TI A +T      + I+R+SG    +V + +   K P PR A    F   DG  
Sbjct: 21  MNH-SDTIVAQATPPGRGGVGILRVSGNKAARVAQLLLG-KLPKPRHADYLPFCDADGST 78

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+ANPGEFS RAF N
Sbjct: 79  LDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 138

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 139 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAIDFPD 198

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  S+ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 199 -EEIDFLSDGKIEAQLHQVIADLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 257

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 258 GREAAIVTDIAGTTRDVLREHIQIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 317

Query: 301 LILLLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD------HLI 343
            +L +      +     EI        P+ +    +  K+D+     E  +        +
Sbjct: 318 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIREISEVNGHSLIRL 377

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG+E L N +K +       +     + +RHL  L     +L+            
Sbjct: 378 SARTGEGIENLRNHLK-LSMGWHGSMEGGFLARRRHLQALELAATHLQQGKHQLLAARAG 436

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 437 ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 474


>gi|153008194|ref|YP_001369409.1| tRNA modification GTPase TrmE [Ochrobactrum anthropi ATCC 49188]
 gi|205415784|sp|A6WX76|MNME_OCHA4 RecName: Full=tRNA modification GTPase mnmE
 gi|151560082|gb|ABS13580.1| tRNA modification GTPase TrmE [Ochrobactrum anthropi ATCC 49188]
          Length = 442

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 199/437 (45%), Positives = 298/437 (68%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TIFA+S+G LPS ++++R+SGP    V E I     P PR A+ + F   +G  +D+G
Sbjct: 8   QDTIFALSSGRLPSGVAVVRISGPKVRFVLETIVGS-IPTPRYAAYKLFRSRNGDPIDRG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + FP P SFTGED AEFH+HGG AVV  +L E+ ++   R+A  GEF+RRAF NGK+D
Sbjct: 67  LALFFPGPNSFTGEDCAEFHLHGGKAVVEKLLSEMGELHGCRIAEAGEFTRRAFSNGKMD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE LADLI++ETE QRRL+++  SG    LY +W  +L   R+FIEA+LDF++E DV
Sbjct: 127 LTIAEGLADLIAAETEGQRRLALQVASGTQRELYTEWRQRLLRARAFIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S++V   +  LK++I +HI+ GK   ++R+G  +VI+G  NAGKSSL N LA ++V
Sbjct: 187 PGSVSEQVWQSLALLKSEIENHIASGKRASMLRDGLHVVIVGAPNAGKSSLLNFLAGREV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++  GTTRD+L + LDL G  V ++DTAG+RETD  VEK GI+R    + +ADL+LL
Sbjct: 247 AIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSSVEKIGIERARARMADADLVLL 306

Query: 305 LKEINSKKEISFPKNID-FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L+++N    ++  +  +    IGTK+DL +   + + + IS+ TGEGL++L+  +++   
Sbjct: 307 LEDMNDPIAVASDEIPEALWKIGTKADLNAESADCWTYRISTKTGEGLDQLLTNLQNFAE 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            +  ++  ++P+ +RH+  L  TV  ++ A +N  +  L++ AEN+RLAS  LG+ITG V
Sbjct: 367 EQIGQIEDAVPTRQRHINLLRSTVTEIDRA-INGTNLPLELRAENMRLASQYLGRITGDV 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE++LD+IFS+FCIGK
Sbjct: 426 DVEEILDVIFSQFCIGK 442


>gi|227550631|ref|ZP_03980680.1| tRNA modification GTP-binding protein TrmE [Enterococcus faecium
           TX1330]
 gi|227180232|gb|EEI61204.1| tRNA modification GTP-binding protein TrmE [Enterococcus faecium
           TX1330]
          Length = 492

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 145/463 (31%), Positives = 249/463 (53%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG    Q+ + +     K      S    +G    
Sbjct: 31  ITLEFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYHSGNKRLSEVPSHTIHYGHIVD 90

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               +++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF+
Sbjct: 91  PKSDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFT 149

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E 
Sbjct: 150 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEV 209

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSS
Sbjct: 210 NIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSS 269

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+  
Sbjct: 270 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRK 329

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE---------EY 339
            +  ADLILL+           ++ +   K +  I +  K+DL +   +         E 
Sbjct: 330 ALAEADLILLVLNQSEPLTAEDEQLLEATKGLKRIILLNKTDLPAQLEQEKLNKLIENEP 389

Query: 340 DHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NE 397
              IS    +GL+ L + I  +    +  +   +  S+ RH+  L +    LE      +
Sbjct: 390 VFSISVAKNDGLDHLESAISDLFFSGETGERDATYVSNTRHIALLEKASLSLEEVIAGID 449

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 450 AGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 492


>gi|161619976|ref|YP_001593863.1| tRNA modification GTPase TrmE [Brucella canis ATCC 23365]
 gi|205829120|sp|A9M9E5|MNME_BRUC2 RecName: Full=tRNA modification GTPase mnmE
 gi|161336787|gb|ABX63092.1| tRNA modification GTPase TrmE [Brucella canis ATCC 23365]
          Length = 442

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 205/437 (46%), Positives = 297/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+G
Sbjct: 8   HDTIFALSSGRLPSGVAVIRISGPKTRFVYETICQ-AIPEPRHAALLTFRSRNGDAIDRG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+D
Sbjct: 67  LILFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV
Sbjct: 127 LTIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DV
Sbjct: 187 PGSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI++   GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L 
Sbjct: 247 AIISKEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLS 306

Query: 305 LKEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++   
Sbjct: 307 LEDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAE 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG V
Sbjct: 367 AKIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDV 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE++LD+IFS+FCIGK
Sbjct: 426 DVEEILDVIFSQFCIGK 442


>gi|260595826|ref|YP_003208397.1| tRNA modification GTPase TrmE [Cronobacter turicensis z3032]
 gi|260215003|emb|CBA26661.1| tRNA modification GTPase mnmE [Cronobacter turicensis z3032]
          Length = 454

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 156/458 (34%), Positives = 244/458 (53%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P  R A    F   DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +                 P  +    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEHPGLSEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ T +G++ L + +K  +      +     + +RHL  L     +L+            
Sbjct: 358 SARTSDGVDVLRSHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|269140891|ref|YP_003297592.1| hypothetical protein ETAE_3550 [Edwardsiella tarda EIB202]
 gi|267986552|gb|ACY86381.1| hypothetical protein ETAE_3550 [Edwardsiella tarda EIB202]
 gi|304560649|gb|ADM43313.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Edwardsiella tarda
           FL6-60]
          Length = 455

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 246/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI A +T      + I+R+SGP    V   +   K P PR A    F   DG +
Sbjct: 1   MISSSDTIVAQATAPGRGGVGILRVSGPQAQAVALALLG-KLPKPRYADYLPFRDHDGTM 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ + ++P LR+A PGEFS RAF N
Sbjct: 60  LDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILQLPGLRIARPGEFSERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   Q ++ L H+R ++EA +DF +
Sbjct: 120 DKMDLAQAEAIADLIDASSEQAARSAVNSLQGVFSARIHQLVESLIHLRIYVEAAIDFPD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  +V   +  + + ++   ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 180 -EEIDFLSDGKVEAQLNAVMDSLAGVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD
Sbjct: 239 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIARAWQEIEQAD 298

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTEEYD------HLI 343
            +L + +  +                 P ++    +  K+D+        D        +
Sbjct: 299 RVLFMVDGTTTDATDPAAIWPDFIARLPASLPITVVRNKADVTGEPLGISDGDGHTLVRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402
           S+ TG G++ L + +K  +      L     + +RHL  L Q   +L+            
Sbjct: 359 SARTGAGVDVLRDHLKRSMGFD-TSLEGGFLARRRHLQALDQAALHLQQGKDQLLGAMAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IF+ FCIGK
Sbjct: 418 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|17986290|ref|NP_538924.1| tRNA modification GTPase TrmE [Brucella melitensis bv. 1 str. 16M]
 gi|225626441|ref|ZP_03784480.1| tRNA modification GTPase TrmE [Brucella ceti str. Cudo]
 gi|225853493|ref|YP_002733726.1| tRNA modification GTPase TrmE [Brucella melitensis ATCC 23457]
 gi|254707419|ref|ZP_05169247.1| tRNA modification GTPase TrmE [Brucella pinnipedialis M163/99/10]
 gi|254709039|ref|ZP_05170850.1| tRNA modification GTPase TrmE [Brucella pinnipedialis B2/94]
 gi|254713535|ref|ZP_05175346.1| tRNA modification GTPase TrmE [Brucella ceti M644/93/1]
 gi|254716110|ref|ZP_05177921.1| tRNA modification GTPase TrmE [Brucella ceti M13/05/1]
 gi|256030564|ref|ZP_05444178.1| tRNA modification GTPase TrmE [Brucella pinnipedialis M292/94/1]
 gi|256045664|ref|ZP_05448542.1| tRNA modification GTPase TrmE [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256112386|ref|ZP_05453307.1| tRNA modification GTPase TrmE [Brucella melitensis bv. 3 str.
           Ether]
 gi|256263027|ref|ZP_05465559.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 2 str. 63/9]
 gi|256370460|ref|YP_003107971.1| tRNA modification GTPase [Brucella microti CCM 4915]
 gi|260169469|ref|ZP_05756280.1| tRNA modification GTPase TrmE [Brucella sp. F5/99]
 gi|260562967|ref|ZP_05833453.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 1 str. 16M]
 gi|261217881|ref|ZP_05932162.1| tRNA modification GTPase mnmE [Brucella ceti M13/05/1]
 gi|261314904|ref|ZP_05954101.1| tRNA modification GTPase mnmE [Brucella pinnipedialis M163/99/10]
 gi|261316538|ref|ZP_05955735.1| tRNA modification GTPase mnmE [Brucella pinnipedialis B2/94]
 gi|261321269|ref|ZP_05960466.1| tRNA modification GTPase mnmE [Brucella ceti M644/93/1]
 gi|261758996|ref|ZP_06002705.1| tRNA modification GTPase mnmE [Brucella sp. F5/99]
 gi|265987612|ref|ZP_06100169.1| tRNA modification GTPase mnmE [Brucella pinnipedialis M292/94/1]
 gi|265992087|ref|ZP_06104644.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993823|ref|ZP_06106380.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 3 str.
           Ether]
 gi|81852665|sp|Q8YJS6|MNME_BRUME RecName: Full=tRNA modification GTPase mnmE
 gi|17981872|gb|AAL51188.1| thiophene and furan oxidation protein thdf [Brucella melitensis bv.
           1 str. 16M]
 gi|225618098|gb|EEH15141.1| tRNA modification GTPase TrmE [Brucella ceti str. Cudo]
 gi|225641858|gb|ACO01772.1| tRNA modification GTPase TrmE [Brucella melitensis ATCC 23457]
 gi|256000623|gb|ACU49022.1| tRNA modification GTPase [Brucella microti CCM 4915]
 gi|260152983|gb|EEW88075.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 1 str. 16M]
 gi|260922970|gb|EEX89538.1| tRNA modification GTPase mnmE [Brucella ceti M13/05/1]
 gi|261293959|gb|EEX97455.1| tRNA modification GTPase mnmE [Brucella ceti M644/93/1]
 gi|261295761|gb|EEX99257.1| tRNA modification GTPase mnmE [Brucella pinnipedialis B2/94]
 gi|261303930|gb|EEY07427.1| tRNA modification GTPase mnmE [Brucella pinnipedialis M163/99/10]
 gi|261738980|gb|EEY26976.1| tRNA modification GTPase mnmE [Brucella sp. F5/99]
 gi|262764804|gb|EEZ10725.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 3 str.
           Ether]
 gi|263003153|gb|EEZ15446.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092899|gb|EEZ17074.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 2 str. 63/9]
 gi|264659809|gb|EEZ30070.1| tRNA modification GTPase mnmE [Brucella pinnipedialis M292/94/1]
 gi|326410057|gb|ADZ67122.1| tRNA modification GTPase TrmE [Brucella melitensis M28]
 gi|326539774|gb|ADZ87989.1| tRNA modification GTPase TrmE [Brucella melitensis M5-90]
          Length = 442

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 205/437 (46%), Positives = 297/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+G
Sbjct: 8   HDTIFALSSGRLPSGVAVIRISGPKTRFVYETICQ-AIPEPRHAALLTFRSRNGDAIDRG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+D
Sbjct: 67  LTLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV
Sbjct: 127 LTIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DV
Sbjct: 187 PGSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L 
Sbjct: 247 AIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLS 306

Query: 305 LKEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++   
Sbjct: 307 LEDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAE 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG V
Sbjct: 367 AKIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDV 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE++LD+IFS+FCIGK
Sbjct: 426 DVEEILDVIFSQFCIGK 442


>gi|23502910|ref|NP_699037.1| tRNA modification GTPase TrmE [Brucella suis 1330]
 gi|254705063|ref|ZP_05166891.1| tRNA modification GTPase TrmE [Brucella suis bv. 3 str. 686]
 gi|260567467|ref|ZP_05837937.1| tRNA modification GTPase mnmE [Brucella suis bv. 4 str. 40]
 gi|261755767|ref|ZP_05999476.1| tRNA modification GTPase mnmE [Brucella suis bv. 3 str. 686]
 gi|81741537|sp|Q8CY34|MNME_BRUSU RecName: Full=tRNA modification GTPase mnmE
 gi|23348942|gb|AAN30952.1| tRNA modification GTPase TrmE [Brucella suis 1330]
 gi|260156985|gb|EEW92065.1| tRNA modification GTPase mnmE [Brucella suis bv. 4 str. 40]
 gi|261745520|gb|EEY33446.1| tRNA modification GTPase mnmE [Brucella suis bv. 3 str. 686]
          Length = 442

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 205/437 (46%), Positives = 296/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+G
Sbjct: 8   HDTIFALSSGRLPSGVAVIRISGPKTRFVYETICQ-AIPEPRHAALLTFRSRNGDAIDRG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+D
Sbjct: 67  LTLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV
Sbjct: 127 LTIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DV
Sbjct: 187 PGSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI++   GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L 
Sbjct: 247 AIISKEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLS 306

Query: 305 LKEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++   
Sbjct: 307 LEDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAE 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG V
Sbjct: 367 AKIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDV 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE++LD+IFS+FCIGK
Sbjct: 426 DVEEILDVIFSQFCIGK 442


>gi|37678186|ref|NP_932795.1| tRNA modification GTPase TrmE [Vibrio vulnificus YJ016]
 gi|37196925|dbj|BAC92766.1| thiophene and furan oxidation protein ThdF [Vibrio vulnificus
           YJ016]
          Length = 462

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 162/455 (35%), Positives = 243/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   QV   +   K    R A    F   DG  LD+
Sbjct: 11  TTDTIVAQATAPGRGGVGIIRVSGPQAAQVALEVTG-KTLKARYAEYLPFKAQDGSELDQ 69

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+
Sbjct: 70  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTISGVRPARPGEFSERAFLNDKM 129

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF E E+
Sbjct: 130 DLTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 188

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ KD
Sbjct: 189 IDFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKD 248

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 249 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIRQADRVL 308

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    KEI        P+ I    I  K+D           ++     +S+ 
Sbjct: 309 FMVDGTTTDATDPKEIWPDFIDRLPEQIGITVIRNKADQTQESLGICHVSQPTLIRLSAK 368

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G+E L N +K  +            + +RHL  L +   +L +     E     +I+
Sbjct: 369 TGQGVEALRNHLKECM-GFSGNSEGGFMARRRHLDALQRAAEHLLIGQEQLEGYMAGEIL 427

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 428 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 462


>gi|283480423|emb|CAY76339.1| tRNA modification GTPase trmE [Erwinia pyrifoliae DSM 12163]
          Length = 467

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 163/458 (35%), Positives = 250/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH  +TI A +T      + I+R+SG     V + +   K P PR A    F   DG  
Sbjct: 14  MNH-SDTIVAQATPPGRGGVGILRVSGHKAAGVAQLLLG-KLPKPRYADYLPFRDADGST 71

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+ANPGEFS RAF N
Sbjct: 72  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 131

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   + ++ LTH+R ++EA +DF +
Sbjct: 132 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNRLVEALTHLRIYVEAAIDFPD 191

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  + + + +  S+ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 192 -EEIDFLSDGKIEAQLHQVIDSLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 250

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 251 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 310

Query: 301 LILLLK-----EINSKKEI------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L +      +     EI        P+ +    +  K+D+          +      +
Sbjct: 311 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIKGVEKVSAHSLIRL 370

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG+E L + +K +       +     + +RHL  L     YL+            
Sbjct: 371 SARTGEGIENLRDHLK-LSMGFSGNMEGGFLARRRHLQALELAATYLQQGKHQLLAARAG 429

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 430 ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 467


>gi|254694684|ref|ZP_05156512.1| tRNA modification GTPase TrmE [Brucella abortus bv. 3 str. Tulya]
 gi|261215012|ref|ZP_05929293.1| tRNA modification GTPase TrmE [Brucella abortus bv. 3 str. Tulya]
 gi|260916619|gb|EEX83480.1| tRNA modification GTPase TrmE [Brucella abortus bv. 3 str. Tulya]
          Length = 442

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 204/437 (46%), Positives = 297/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+G
Sbjct: 8   HDTIFALSSGRLPSGVAVIRISGPKTRFVYETICQ-AIPEPRHAALLTFRSRNGDAIDRG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+D
Sbjct: 67  LTLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV
Sbjct: 127 LTIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DV
Sbjct: 187 PGSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L 
Sbjct: 247 AIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLS 306

Query: 305 LKEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++   
Sbjct: 307 LEDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAE 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG V
Sbjct: 367 AKIGQIEDAVPTRQRHINLLRATIEEIEKA-IESDDLPLELRAENMRLASQFLGRITGDV 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE++LD++FS+FCIGK
Sbjct: 426 DVEEILDVMFSQFCIGK 442


>gi|254700692|ref|ZP_05162520.1| tRNA modification GTPase TrmE [Brucella suis bv. 5 str. 513]
 gi|261751202|ref|ZP_05994911.1| tRNA modification GTPase mnmE [Brucella suis bv. 5 str. 513]
 gi|261740955|gb|EEY28881.1| tRNA modification GTPase mnmE [Brucella suis bv. 5 str. 513]
          Length = 442

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 205/437 (46%), Positives = 296/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A L  F   +G  +D+G
Sbjct: 8   HDTIFALSSGRLPSGVAVIRISGPKTRFVYETICQ-AIPEPRHAVLLTFRSRNGDAIDRG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+D
Sbjct: 67  LTLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV
Sbjct: 127 LTIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DV
Sbjct: 187 PGSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L 
Sbjct: 247 AIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLS 306

Query: 305 LKEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++   
Sbjct: 307 LEDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAE 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG V
Sbjct: 367 AKIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDV 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE++LD+IFS+FCIGK
Sbjct: 426 DVEEILDVIFSQFCIGK 442


>gi|310765880|gb|ADP10830.1| tRNA modification GTPase trmE [Erwinia sp. Ejp617]
          Length = 467

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 163/458 (35%), Positives = 249/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH  +TI A +T      + I+R+SG     V + +   K P PR A    F   DG  
Sbjct: 14  MNH-SDTIVAQATPPGRGGVGILRVSGHKAAGVAQLLLG-KLPKPRYADFLPFRDADGST 71

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+ANPGEFS RAF N
Sbjct: 72  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 131

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 132 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAIDFPD 191

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  + + + +  S+ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 192 -EEIDFLSDGKIEAQLHQVIDSLEAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 250

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 251 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 310

Query: 301 LILLLK-----EINSKKEI------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L +      +     EI        P+ +    +  K+D+          +      +
Sbjct: 311 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGETRGVEKVSTNSLIRL 370

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG+E L + +K +       +     + +RHL  L     YL+            
Sbjct: 371 SARTGEGIENLRDHLK-LSMGFSGNMEGGFLARRRHLQALELAATYLQQGKHQLLAARAG 429

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 430 ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 467


>gi|326423790|ref|NP_759969.2| tRNA modification GTPase TrmE [Vibrio vulnificus CMCP6]
 gi|319999155|gb|AAO09496.2| tRNA modification GTPase TrmE [Vibrio vulnificus CMCP6]
          Length = 462

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 161/455 (35%), Positives = 243/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   QV   +   K    R A    F   DG  LD+
Sbjct: 11  TTDTIVAQATAPGRGGVGIIRVSGPQAAQVALEVTG-KTLKARYAEYLPFKAQDGSELDQ 69

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+
Sbjct: 70  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTISGVRPARPGEFSERAFLNDKM 129

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF E E+
Sbjct: 130 DLTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 188

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ KD
Sbjct: 189 IDFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKD 248

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 249 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIRQADRVL 308

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    KEI        P+ I    I  K+D           ++     +S+ 
Sbjct: 309 FMVDGTTTDATDPKEIWPDFIDRLPEQIGITVIRNKADQTQESLGICHVSQPTLIRLSAK 368

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G++ L N +K  +            + +RHL  L +   +L +     E     +I+
Sbjct: 369 TGQGVDALRNHLKECM-GFSGNSEGGFMARRRHLDALQRAAEHLLIGQEQLEGYMAGEIL 427

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 428 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 462


>gi|239828707|ref|YP_002951331.1| tRNA modification GTPase TrmE [Geobacillus sp. WCH70]
 gi|239809000|gb|ACS26065.1| tRNA modification GTPase TrmE [Geobacillus sp. WCH70]
          Length = 461

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 152/461 (32%), Positives = 246/461 (53%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL----- 56
           E +TI A+ST     AI+I+RLSG     + + I +    K      S    +G      
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDEAIAIADRIFQSPSGKRLKDVPSHTIHYGHIVDPK 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G+ +++ ++ V  +P++FT ED  E + HGG+  VN +L+ L      RLA PGEF++R
Sbjct: 62  SGQTVEEVMVSVMRAPKTFTREDVVEINCHGGLVSVNRVLQ-LVLTNGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    ++++ M G LS L  +    +    + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETLAHVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +   ++    +++  I   +   + G+I+R G   VI+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTPHLLMEKAQYVREQIEKLLQTAQQGKILREGLATVIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+D+VE+ G++R+   +
Sbjct: 241 NALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDVVERIGVERSRQML 300

Query: 297 ENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTY---------TEEYDH 341
           + ADLILL+           +K     K +DFI I  K+DL                   
Sbjct: 301 KEADLILLVLNYHEPLTEEDEKLFEMVKGMDFIVIVNKTDLPKNIDMDRVKQLADGRPII 360

Query: 342 LISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S    +G+E+L   I  +      +    +  S+ RH+  L Q  + +E A S  E  
Sbjct: 361 TTSLLQEKGIEDLETAISEMFFSGSVEAGDLTYVSNSRHIALLHQAKKAIEDAISGIESG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  +L  A   LG+I G    E L+D +FS+FC+GK
Sbjct: 421 MPVDLVQIDLTKAWELLGEIIGDTVHESLIDQLFSQFCLGK 461


>gi|325567648|ref|ZP_08144315.1| tRNA modification GTPase TrmE [Enterococcus casseliflavus ATCC
           12755]
 gi|325159081|gb|EGC71227.1| tRNA modification GTPase TrmE [Enterococcus casseliflavus ATCC
           12755]
          Length = 481

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 151/463 (32%), Positives = 247/463 (53%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG     + + I +   K   +  S    +G    
Sbjct: 20  ITQEFDTIAAISTPPGEGAISIVRLSGEEAIAIADRIFQAGTKTLAQVPSHTIHYGHIVD 79

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             + R++D+ +L V   P +FT ED  E + HGGI VVN +L+ L      RLA PGEF+
Sbjct: 80  PEENRLMDEVMLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFT 138

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS L      ++    + +E 
Sbjct: 139 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEV 198

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  +++ +L     +K  I + ++  + G+I+R G    I+G  N GKSS
Sbjct: 199 NIDYPEYDDVEELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSS 258

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VEK G++R+  
Sbjct: 259 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVEKIGVERSRK 318

Query: 295 EVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY---------TEEY 339
            +  A+LILL+   +       K+ +        I +  K+DL              +E 
Sbjct: 319 ALAEAELILLVLNQSEGLTQEDKQLLELTAGSRRIILLNKTDLEPKLAPAELAQYAADEP 378

Query: 340 DHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397
              +S  T EGL++L   I  +    K      S  S+ RH+  L   V+ L E+    E
Sbjct: 379 IFSVSVLTNEGLDQLEQAIADLFFGGKTTDKDASYLSNTRHIALLENAVQSLSEVIQGIE 438

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 439 AGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 481


>gi|301299788|ref|ZP_07206030.1| tRNA modification GTPase TrmE [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852601|gb|EFK80243.1| tRNA modification GTPase TrmE [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 464

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/461 (32%), Positives = 240/461 (52%), Gaps = 24/461 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
             E +TI A+ST     AISI+RLSG    ++   + K K    +  +    +G      
Sbjct: 6   PTEFDTIAAISTPPGEGAISIVRLSGEDAVKIANKVFKGKN-LEKVPTHTINYGHIVNPK 64

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
               LD+ ++ V  +P +FT ED  E + HGGI   N IL+ L      RLA PGEF++R
Sbjct: 65  TNEELDEVMVSVMLAPRTFTREDIIEINCHGGIVPTNQILQ-LLLSNGARLAEPGEFTKR 123

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF +G+IDL +AES+ DLI ++T+   ++++  + G LS L       +  + + +E ++
Sbjct: 124 AFLHGRIDLTQAESVMDLIRAKTDRSMKVALNQLDGNLSHLIRNLRQDILDVLAQVEVNI 183

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +    + +K  I   ++  K G+++R G    I+G  N GKSSL 
Sbjct: 184 DYPEYDDVETLTTKMLREKAIEVKKSIQQLLTTAKQGKVLREGLATAIVGRPNVGKSSLL 243

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D VE+ G++R+   +
Sbjct: 244 NHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDKVERIGVERSRKAI 303

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDH 341
           E ADL++L+   +       K+ I        I I  K+DL              E+   
Sbjct: 304 EQADLVMLVLNASEELTDEDKELIQATSGKKRIVILNKTDLPQKLNMDEVRELVPEDELI 363

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S     G+++L  KI  +     +    +I  ++ RH+  L+Q    L+      +  
Sbjct: 364 TTSVLKKTGVDKLEEKIAELFFGGIENSQSTIMVTNARHIALLNQAEDSLDAVLQGLDSG 423

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D+   ++  A   LG+ITG    ++LL  +FS+FC+GK
Sbjct: 424 MPVDLCQIDMTNAWDELGEITGDSYQDELLTQLFSQFCLGK 464


>gi|260584383|ref|ZP_05852130.1| tRNA modification GTPase TrmE [Granulicatella elegans ATCC 700633]
 gi|260157901|gb|EEW92970.1| tRNA modification GTPase TrmE [Granulicatella elegans ATCC 700633]
          Length = 476

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 151/463 (32%), Positives = 252/463 (54%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL--- 56
           M  E +TI A+ST     AI I+R+SG     +   I +   K    + +    +G    
Sbjct: 15  MQTEFDTIAAISTAPGEGAIGIVRISGDLAISIASSIYQCGTKQLEEQKTHTIHYGHIVD 74

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
              G + D+ ++ V  +P++FT ED  E + HGGI  +N +L+ + +M   RLA PGEF+
Sbjct: 75  PKSGEVYDEVMVSVLRAPKTFTREDIVEINCHGGIVAINRVLQLVLRM-GARLAEPGEFT 133

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG+IDL +AE++ DLI ++T+   +L+M  + G+LS L      ++ +  + +E 
Sbjct: 134 KRAFLNGRIDLSQAEAVMDLIRAKTDKSMQLAMRQLDGQLSHLIQNLRQEILNTLAQVEV 193

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  + + +      +   I + ++    G+I+R+G K  I+G  N GKSS
Sbjct: 194 NIDYPEYDDVEEMTLQLLREKTQQVLQGIRALLNTASQGKILRDGLKTAIVGRPNVGKSS 253

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRD +   +++ G  +++ DTAGIRETDDIVEK G++R+  
Sbjct: 254 LLNVLLREEKAIVTDIAGTTRDTIEEYVNVRGVPLQLIDTAGIRETDDIVEKIGVERSRK 313

Query: 295 EVENADLILLLK---EINSKKEISFP---KNIDFIFIGTKSDLYSTYTEEYDHLI----- 343
            ++ AD +LLL    E   +++I      K +  I +  K+DL S  ++E          
Sbjct: 314 ALKEADFVLLLLNQSETLQEEDIRLLETTKGMKRIILFNKTDLPSKLSKEDIAPYAQVEE 373

Query: 344 ----SSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397
               S    EG+++L  KI       +  +   +  S+ RH+  L +  + L E+ +  E
Sbjct: 374 IVTTSMLNKEGIDQLEEKIAGYFFQGQMNERDATYLSNTRHIALLEKAEQALVEVQNGIE 433

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D+I  +   A   LG+ITG    ++LL  +FS+FC+GK
Sbjct: 434 MGMPVDLIQIDFTRAWDLLGEITGDSVQDELLTQLFSQFCLGK 476


>gi|153873147|ref|ZP_02001823.1| tRNA modification GTPase [Beggiatoa sp. PS]
 gi|152070386|gb|EDN68176.1| tRNA modification GTPase [Beggiatoa sp. PS]
          Length = 444

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 159/448 (35%), Positives = 255/448 (56%), Gaps = 12/448 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M  +++TI A++T A    I +IR+SGP   ++   +   + P PR  +   F    G  
Sbjct: 1   MLEQQDTIAALATPAGRGGIGVIRISGPKVPEIARAVLG-QLPKPRYGTFSDFLEPTGEQ 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + FP+P SFTGE   E   HGG  V++ +L+ + K    R+A PGEFS RAF N
Sbjct: 60  IDQGIALYFPAPHSFTGEAVLELQGHGGPVVMDLLLKAVLK-YGARVARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL +AE++ADLI S +    R ++  + GE S      +++L  +RS+IEA +DF +
Sbjct: 119 GKIDLAQAEAIADLIDSASTQAARCALRSLQGEFSHQIHSLVEQLIWLRSYIEAGIDFVD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +  +VL+ +  L + + + + + + G +++ G +IV++G  N GKSSL N+LA
Sbjct: 179 -EEIDLLADGQVLDRMKKLLHGLDTILDKAQQGYLLKEGMRIVLVGEPNVGKSSLLNSLA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT +PGTTRDV+   + + G  + I+DTAG+RET+D+VE EGI+RT L ++ AD
Sbjct: 238 GRETAIVTPLPGTTRDVVRDQIQINGMPLHITDTAGLRETEDLVELEGIRRTKLALKEAD 297

Query: 301 LILLLKEINSKKE-----ISFPKNIDFIFIGTKSDL---YSTYTEEYDHLISSFTGEGLE 352
           L+++L +     +     +    +   + +  K DL    +   EE    +S+ TGEG+E
Sbjct: 298 LVIVLLDDRHSNDSIHANLLAELDKPPLIVRNKIDLSGHRAGMNEEGILYLSAKTGEGIE 357

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
           +L +     +         +  + +RHL  L Q    L  A  +      +++AE LR A
Sbjct: 358 QLKDYFTQKM-GLHSSAEGTFMARRRHLDALQQAKIALTTALNHAHTYQTELLAEELRQA 416

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 QHALGEITGEFTADDLLGQIFSTFCIGK 444


>gi|253690652|ref|YP_003019842.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259495843|sp|C6DK97|MNME_PECCP RecName: Full=tRNA modification GTPase mnmE
 gi|251757230|gb|ACT15306.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 454

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 158/458 (34%), Positives = 250/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M++  +TI A +T      + I+R+SG +  +V + +   K P PR A    F   +G  
Sbjct: 1   MSNT-DTIVAQATPPGRGGVGILRVSGRAAAEVAQAVLG-KLPKPRHADYLPFRDANGTT 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +PN+R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPNVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGVFSTRVNQLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++ + +  +  D+ +  ++   G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIESQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------ 343
            +L + +  + +               PK +    +  K+D+        D         
Sbjct: 298 RVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGIEDVNTHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TG+G++ L + +K  +            + +RHL  L    ++L             
Sbjct: 358 SARTGDGVDTLRDHLKQSM-GFTSNTEGGFLARRRHLQALELAAQHLIQGKEQLVSAYAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|238921763|ref|YP_002935278.1| tRNA modification GTPase TrmE [Edwardsiella ictaluri 93-146]
 gi|238871332|gb|ACR71043.1| probable tRNA modification GTPase TrmE, putative [Edwardsiella
           ictaluri 93-146]
          Length = 455

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 247/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI A +T      + I+R+SGP    V   +   K P PR A    F   DG  
Sbjct: 1   MISSSDTIVAQATAPGRGGVGILRVSGPQAQAVAMALLG-KLPKPRYADYLPFRDHDGTP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ + ++P LR+A PGEFS RAF N
Sbjct: 60  LDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILQLPELRIARPGEFSERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   Q ++ L H+R ++EA +DF +
Sbjct: 120 DKMDLAQAEAIADLIDASSEQAARSAVNSLQGVFSARIHQLVESLIHLRIYVEAAIDFPD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  +V   +  + ++++   ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 180 -EEIDFLSDGKVEAHLNAVMDELAGVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 239 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIERAD 298

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------ 343
            +L + +  +                 P ++    +  K+D+        D         
Sbjct: 299 RVLFMVDGTTTDATDPAAIWPDFIARLPASLPITVVRNKADVTGETLGISDCDGHTLVRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402
           S+ TG G++ L + +K  +     +L     + +RHL  L Q   +L+            
Sbjct: 359 SARTGAGVDVLRDHLKRSMGFD-TRLEGGFLARRRHLQALDQAALHLQQGKDQLLGAMAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IF+ FCIGK
Sbjct: 418 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|62290906|ref|YP_222699.1| tRNA modification GTPase TrmE [Brucella abortus bv. 1 str. 9-941]
 gi|82700817|ref|YP_415391.1| tRNA modification GTPase TrmE [Brucella melitensis biovar Abortus
           2308]
 gi|189025119|ref|YP_001935887.1| tRNA modification GTPase TrmE [Brucella abortus S19]
 gi|237816411|ref|ZP_04595404.1| tRNA modification GTPase TrmE [Brucella abortus str. 2308 A]
 gi|254690194|ref|ZP_05153448.1| tRNA modification GTPase TrmE [Brucella abortus bv. 6 str. 870]
 gi|254696311|ref|ZP_05158139.1| tRNA modification GTPase TrmE [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731227|ref|ZP_05189805.1| tRNA modification GTPase TrmE [Brucella abortus bv. 4 str. 292]
 gi|256258448|ref|ZP_05463984.1| tRNA modification GTPase TrmE [Brucella abortus bv. 9 str. C68]
 gi|260546168|ref|ZP_05821908.1| tRNA modification GTPase mnmE [Brucella abortus NCTC 8038]
 gi|260755735|ref|ZP_05868083.1| tRNA modification GTPase TrmE [Brucella abortus bv. 6 str. 870]
 gi|260758959|ref|ZP_05871307.1| tRNA modification GTPase TrmE [Brucella abortus bv. 4 str. 292]
 gi|260760683|ref|ZP_05873026.1| tRNA modification GTPase TrmE [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884761|ref|ZP_05896375.1| tRNA modification GTPase mnmE [Brucella abortus bv. 9 str. C68]
 gi|297247290|ref|ZP_06931008.1| tRNA modification GTPase TrmE [Brucella abortus bv. 5 str. B3196]
 gi|75496086|sp|Q57AJ6|MNME_BRUAB RecName: Full=tRNA modification GTPase mnmE
 gi|123547323|sp|Q2YR11|MNME_BRUA2 RecName: Full=tRNA modification GTPase mnmE
 gi|62197038|gb|AAX75338.1| TrmE, tRNA modification GTPase [Brucella abortus bv. 1 str. 9-941]
 gi|82616918|emb|CAJ12019.1| ATP/GTP-binding site motif A (P-loop):Ras GTPase superfamily:tRNA
           modification GTPase TrmE:Small GTP-binding protein
           domain:G [Brucella melitensis biovar Abortus 2308]
 gi|189020691|gb|ACD73413.1| tRNA modification GTPase [Brucella abortus S19]
 gi|237788478|gb|EEP62693.1| tRNA modification GTPase TrmE [Brucella abortus str. 2308 A]
 gi|260096275|gb|EEW80151.1| tRNA modification GTPase mnmE [Brucella abortus NCTC 8038]
 gi|260669277|gb|EEX56217.1| tRNA modification GTPase TrmE [Brucella abortus bv. 4 str. 292]
 gi|260671115|gb|EEX57936.1| tRNA modification GTPase TrmE [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675843|gb|EEX62664.1| tRNA modification GTPase TrmE [Brucella abortus bv. 6 str. 870]
 gi|260874289|gb|EEX81358.1| tRNA modification GTPase mnmE [Brucella abortus bv. 9 str. C68]
 gi|297174459|gb|EFH33806.1| tRNA modification GTPase TrmE [Brucella abortus bv. 5 str. B3196]
          Length = 442

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 204/437 (46%), Positives = 297/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+G
Sbjct: 8   HDTIFALSSGRLPSGVAVIRISGPKTRFVYETICQ-AIPEPRHAALLTFRSRNGDAIDRG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+D
Sbjct: 67  LTLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV
Sbjct: 127 LTIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DV
Sbjct: 187 PGSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L 
Sbjct: 247 AIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLS 306

Query: 305 LKEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++   
Sbjct: 307 LEDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAE 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG V
Sbjct: 367 AKIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDV 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE++LD++FS+FCIGK
Sbjct: 426 DVEEILDVMFSQFCIGK 442


>gi|227328550|ref|ZP_03832574.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 454

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 157/458 (34%), Positives = 246/458 (53%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M++  +TI A +T      + I+R+SG +   V   +   K P PR A    F   +G  
Sbjct: 1   MSNT-DTIVAQATPPGRGGVGILRISGQAAADVAHTVLG-KLPKPRHADYLPFRDANGTT 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  + N+R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLSNVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++   G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------ 343
            +L + +  + +               PK +    +  K+D+        D         
Sbjct: 298 RVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGEALGIEDVNTHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L + +K  +            + +RHL  L    ++L             
Sbjct: 358 SARTGEGIDTLRDHLKQSM-GFTSNTEGGFLARRRHLQALELAAQHLIQGKEQLVSAYAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|260912765|ref|ZP_05919251.1| tRNA modification GTPase TrmE [Pasteurella dagmatis ATCC 43325]
 gi|260633143|gb|EEX51308.1| tRNA modification GTPase TrmE [Pasteurella dagmatis ATCC 43325]
          Length = 476

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 161/454 (35%), Positives = 250/454 (55%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V   +   K P PR A    F  LDG +LD+G
Sbjct: 26  KETIVAQATAPGRGGIGILRVSGPKAVEVANTVLG-KCPKPRMADYLPFKDLDGTVLDQG 84

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 85  IALYFKAPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 144

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++
Sbjct: 145 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPD-EEI 203

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   ++   S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 204 DFLADGKIEAHLNDIIEQLNKVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 263

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD ILL
Sbjct: 264 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILL 323

Query: 305 LKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + +   +                P  I    +  K+DL        ++       +S+ T
Sbjct: 324 MLDSTEQDNQNLDNVWPEFLAKLPSQIPVTIVRNKADLSGEAEGIQENSGYTIVTLSAKT 383

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIA 406
            +G+E L   +K  +  +   +     + +RHL  L +   +L++  +        +++A
Sbjct: 384 QQGVELLREHLKQSMGYQ-TNMEGGFLARRRHLDALEKAAEHLQLGHVQLTQFYAGELLA 442

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 443 EELRMVQEHLSEITGQFTSDDLLGNIFSSFCIGK 476


>gi|69247494|ref|ZP_00604364.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Enterococcus faecium DO]
 gi|68194819|gb|EAN09294.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Enterococcus faecium DO]
          Length = 494

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 144/463 (31%), Positives = 248/463 (53%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG    Q+ + +     K      S    +G    
Sbjct: 33  ITLEFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSHTIHYGHIVD 92

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               +++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF+
Sbjct: 93  PKSNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFT 151

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E 
Sbjct: 152 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEV 211

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSS
Sbjct: 212 NIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSS 271

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+  
Sbjct: 272 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRK 331

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE---------EY 339
            +  ADLILL+           ++ +     +  I +  K+DL +   +         E 
Sbjct: 332 ALAEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEP 391

Query: 340 DHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NE 397
              IS    +GL+ L + I  +    +  +   +  S+ RH+  L +    LE      +
Sbjct: 392 VFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTRHIALLEKASLSLEEVIAGID 451

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 452 SGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 494


>gi|46577354|sp|Q7MQK6|MNME_VIBVY RecName: Full=tRNA modification GTPase mnmE
          Length = 453

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 162/455 (35%), Positives = 243/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   QV   +   K    R A    F   DG  LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPQAAQVALEVTG-KTLKARYAEYLPFKAQDGSELDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTISGVRPARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ KD
Sbjct: 180 IDFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKD 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIRQADRVL 299

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    KEI        P+ I    I  K+D           ++     +S+ 
Sbjct: 300 FMVDGTTTDATDPKEIWPDFIDRLPEQIGITVIRNKADQTQESLGICHVSQPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G+E L N +K  +            + +RHL  L +   +L +     E     +I+
Sbjct: 360 TGQGVEALRNHLKECM-GFSGNSEGGFMARRRHLDALQRAAEHLLIGQEQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|308188770|ref|YP_003932901.1| tRNA modification GTPase [Pantoea vagans C9-1]
 gi|308059280|gb|ADO11452.1| tRNA modification GTPase [Pantoea vagans C9-1]
          Length = 454

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 156/458 (34%), Positives = 245/458 (53%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V   +   K P PR A    F   DG +
Sbjct: 1   MSH-SDTIVAQATPPGRGGVGILRVSGAQAAEVARQLLG-KLPKPRYADYLPFTDSDGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAVRSAVNSLQGAFSTRVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S   +   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGRIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +                 P  +    +  K+D+       +         +
Sbjct: 298 RVLFMVDGTTTDATEAAAIWPDFVSRLPPELPITVVRNKADVTGEALGLTEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ T EG++ L + +K  +      +     + +RHL  L     +L+            
Sbjct: 358 SARTSEGVDALRDHLKQSM-GFAGNMEGGFLARRRHLQALELAATHLQQGKAQLLGAQAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRVAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|259910299|ref|YP_002650655.1| tRNA modification GTPase TrmE [Erwinia pyrifoliae Ep1/96]
 gi|224965921|emb|CAX57454.1| tRNA modification GTPase [Erwinia pyrifoliae Ep1/96]
          Length = 454

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 163/458 (35%), Positives = 250/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH  +TI A +T      + I+R+SG     V + +   K P PR A    F   DG  
Sbjct: 1   MNH-SDTIVAQATPPGRGGVGILRVSGHKAAGVAQLLLG-KLPKPRYADYLPFRDADGST 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+ANPGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   + ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNRLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  + + + +  S+ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLHQVIDSLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 297

Query: 301 LILLLK-----EINSKKEI------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L +      +     EI        P+ +    +  K+D+          +      +
Sbjct: 298 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIKGVEKVSAHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG+E L + +K +       +     + +RHL  L     YL+            
Sbjct: 358 SARTGEGIENLRDHLK-LSMGFSGNMEGGFLARRRHLQALELAATYLQQGKHQLLAARAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|85712623|ref|ZP_01043670.1| tRNA modification GTPase [Idiomarina baltica OS145]
 gi|85693614|gb|EAQ31565.1| tRNA modification GTPase [Idiomarina baltica OS145]
          Length = 467

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 160/454 (35%), Positives = 248/454 (54%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            ++I A +T      + I+R+SGP   QV   +     P PRKA    F+  +G +LD+G
Sbjct: 17  NDSIVAQATPPGRGGVGIVRVSGPQAKQVASALIGHCPP-PRKAEYVPFYDKEGHLLDEG 75

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F  P SFTGED  E   HGG  +++ I++ + ++P++R A PGEFS RAF N K+D
Sbjct: 76  IALFFKGPNSFTGEDVLELQGHGGPVLIDMIIKAILELPDIRPARPGEFSERAFLNDKLD 135

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + GE S      +D + H+R ++EA +DF + E++
Sbjct: 136 LTQAEAIADLIDTNSEQAAKAALQSLKGEFSHKIDVLVDAVIHLRMYVEAAIDFPD-EEI 194

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              S  +V ND+  + + +     Q K G ++R G +IVI G  NAGKSSL NALA ++ 
Sbjct: 195 DFLSDGKVANDLAEIIDQLFHIEQQAKQGTLMREGMRIVIAGRPNAGKSSLLNALAGRES 254

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI+R + E+  AD +L 
Sbjct: 255 AIVTEIAGTTRDVLREHIQIDGMPLHIIDTAGLRDSPDQVERIGIERAWDEIRQADRVLF 314

Query: 305 LKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFT 347
           + +      I             P ++ F  I  K DL    T   +H        S+ T
Sbjct: 315 MVDSQETSAIHPDDIWPEFFAQLPDDMPFTVIRNKIDLTQENTGLTEHNGIPVIQLSAKT 374

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           G G+E+L   +K  +         S  + +RHL  L +   +L +   + E +   +++A
Sbjct: 375 GHGIEQLREHLKHCV-GYSATSEGSFMARRRHLDALEKAKSHLLLGQEHLELNLAGELLA 433

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRL    L +ITG    + LL  IF  FCIGK
Sbjct: 434 EELRLTQQHLNEITGEFTSDDLLGQIFGSFCIGK 467


>gi|257875886|ref|ZP_05655539.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC20]
 gi|257810052|gb|EEV38872.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC20]
          Length = 481

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 151/463 (32%), Positives = 247/463 (53%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG     + + I +   K   +  S    +G    
Sbjct: 20  ITQEFDTIAAISTPPGEGAISIVRLSGEKAIAIADRIFQAGTKTLAQVPSHTIHYGHIVD 79

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             + R++D+ +L V   P +FT ED  E + HGGI VVN +L+ L      RLA PGEF+
Sbjct: 80  PEENRLMDEVMLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFT 138

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS L      ++    + +E 
Sbjct: 139 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEV 198

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  +++ +L     +K  I + ++  + G+I+R G    I+G  N GKSS
Sbjct: 199 NIDYPEYDDVEELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSS 258

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VEK G++R+  
Sbjct: 259 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVEKIGVERSRK 318

Query: 295 EVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY---------TEEY 339
            +  A+LILL+   +       K+ +        I +  K+DL              +E 
Sbjct: 319 ALAEAELILLVLNQSEGLTQEDKQLLELTAGSRRIILLNKTDLEPKLAPAELAQYAADEP 378

Query: 340 DHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397
              +S  T EGL++L   I  +    K      S  S+ RH+  L   V+ L E+    E
Sbjct: 379 IFSVSVLTSEGLDQLEQAIADLFFGGKTTDKDASYLSNTRHIALLENAVQSLSEVIQGIE 438

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 439 AGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 481


>gi|34499858|ref|NP_904073.1| tRNA modification GTPase TrmE [Chromobacterium violaceum ATCC
           12472]
 gi|46577367|sp|Q7NPT9|MNME_CHRVO RecName: Full=tRNA modification GTPase mnmE
 gi|34105708|gb|AAQ62062.1| thiophene and furan oxidation protein ThdF [Chromobacterium
           violaceum ATCC 12472]
          Length = 450

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/447 (36%), Positives = 244/447 (54%), Gaps = 18/447 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI AV+T      + +IR+SG       + I   K P PR A+   FF   G+ LD GLL
Sbjct: 9   TICAVATAPGRGGVGVIRVSGKDLLPFAQAISGGKTPKPRYATYTDFFDAHGQALDNGLL 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N K+DL 
Sbjct: 69  LFFPGPNSFTGEDVIELQGHGGPVVLKMLLARCVEL-GARLAEPGEFTKRAFLNDKLDLA 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AES+ADLI + +E   R +++ + G  S      +D+L ++R  +EA LDF E E++  
Sbjct: 128 QAESVADLIDASSETAARSALKSLKGAFSREVHGLVDELINLRMLVEATLDFPE-EEIDF 186

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
               + +  +  L+  +    +  K G I+R G  +V++G  N GKSSL NALA  D+AI
Sbjct: 187 LKQADAIGRLRRLRAQLVGVQATAKQGAILREGMHVVLVGQPNVGKSSLMNALAGDDIAI 246

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTDI GTTRD +  ++ ++G  V I DTAG+R+TDD+VEK GI+RT+  VE ADL LLL 
Sbjct: 247 VTDIAGTTRDTVREEIVIDGVPVHIIDTAGLRDTDDVVEKIGIERTWQAVERADLALLLV 306

Query: 307 EINSKKEIS-------FPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEE 353
           +                P  +  + +  K DL        +         S+ T +G++ 
Sbjct: 307 DSREGLTAEVQSILERLPPALPRVQVFNKVDLSGEAAGLAEQDGHPLVRLSARTHDGVDI 366

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  K+  ++            + +RHL  +++   +LE+A  + +   ++I AE LR+A 
Sbjct: 367 LKAKLLEMI-GYSGADEGVFLARQRHLDAIARAADHLELAEADWEQ--VEIFAEELRMAQ 423

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L +ITG    + LL +IFS+FCIGK
Sbjct: 424 NALSEITGEFSADDLLGVIFSRFCIGK 450


>gi|218708090|ref|YP_002415711.1| tRNA modification GTPase TrmE [Vibrio splendidus LGP32]
 gi|218321109|emb|CAV17059.1| tRNA modification GTPase trmE [Vibrio splendidus LGP32]
          Length = 467

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 162/455 (35%), Positives = 244/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   QV   +   K   PR A    F   DG  LD+
Sbjct: 16  TTDTIVAQATAPGRGGVGIIRVSGPLATQVALEVTG-KTLKPRYAEYLPFKSHDGIELDQ 74

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+
Sbjct: 75  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILAISGVRAARPGEFSERAFLNDKM 134

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S      +D L ++R ++EA +DF E E+
Sbjct: 135 DLTQAEAIADLIDASSEEAAKSALQSLQGEFSKRINTLVDSLIYLRIYVEAAIDFPE-EE 193

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 194 IDFLADGKVSADLQAIIDNLEAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 253

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+  AD +L
Sbjct: 254 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIERAWEEIAQADRVL 313

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    K+I        P NI    I  K+D  S         +     +S+ 
Sbjct: 314 FMVDGTTTDATDPKDIWPDFVDRLPDNIGMTVIRNKADQTSEELGICHVNDPTLIRLSAK 373

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G++ L + +K  +            + +RHL  L +   +L++     E     +I+
Sbjct: 374 TGQGVDALRSHLKDCM-GFAGGHEGGFMARRRHLDALERASEHLDIGQQQLEGYMAGEIL 432

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 433 AEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 467


>gi|317050193|ref|YP_004117841.1| tRNA modification GTPase TrmE [Pantoea sp. At-9b]
 gi|316951810|gb|ADU71285.1| tRNA modification GTPase TrmE [Pantoea sp. At-9b]
          Length = 454

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 154/458 (33%), Positives = 246/458 (53%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     +   +   K P PR A    F   DG +
Sbjct: 1   MSH-SDTIVAQATPPGRGGVGILRISGAKAADIARAVLG-KLPKPRYADYLPFADSDGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S      ++ LT++R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRINALVEALTYLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+++  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNAVIGDLNAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +                 P  +    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDATEAAAIWPDFVSRLPAELPITVVRNKADMTGESLGLSEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TG G++ L + +K  +      +     + +RHL  L     +L+            
Sbjct: 358 SARTGAGVDTLRDHLKQTM-GFSGNMEGGFLARRRHLQALELAATHLQQGKDQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|254509080|ref|ZP_05121183.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 16]
 gi|219548013|gb|EED25035.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 16]
          Length = 453

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 246/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   +V + +   K   PR A    F   DG  LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPLAEKVAQEVTG-KTLRPRYAEYLPFTSQDGSQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ + ++P +R A PGEFS RAF N K+
Sbjct: 61  GIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILQIPGIRTARPGEFSERAFLNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G  S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLAQAEAIADLIDASSEEAAKSALQSLQGAFSQRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++S+   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVAGDLQAIIDNLSAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVL 299

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    KEI        P NI    I  K+D                  +S+ 
Sbjct: 300 FMVDGTTTDATDPKEIWPDFVDRLPDNIGMTVIRNKADQTGEDLGICHVNAPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TGEG+E L + +K  +            + +RHL  L +   +L++     E     +I+
Sbjct: 360 TGEGVESLRSHLKECM-GFAGGNEGGFMARRRHLEALERAAEHLDIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLSEITGEFSSDDLLGRIFSSFCIGK 453


>gi|148559809|ref|YP_001259867.1| tRNA modification GTPase TrmE [Brucella ovis ATCC 25840]
 gi|294851291|ref|ZP_06791964.1| tRNA modification GTPase TrmE [Brucella sp. NVSL 07-0026]
 gi|205829121|sp|A5VT20|MNME_BRUO2 RecName: Full=tRNA modification GTPase mnmE
 gi|148371066|gb|ABQ61045.1| tRNA modification GTPase TrmE [Brucella ovis ATCC 25840]
 gi|294819880|gb|EFG36879.1| tRNA modification GTPase TrmE [Brucella sp. NVSL 07-0026]
          Length = 442

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 204/437 (46%), Positives = 297/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TIFA+S+G LPS +++IR+SGP    V E I ++  P PR A+L  F   +G  +D+G
Sbjct: 8   HDTIFALSSGRLPSGVAVIRISGPKTRFVYETI-RQAIPEPRHAALLTFRSRNGDAIDRG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+D
Sbjct: 67  LTLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV
Sbjct: 127 LTIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DV
Sbjct: 187 PGSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L 
Sbjct: 247 AIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLS 306

Query: 305 LKEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++   
Sbjct: 307 LEDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAE 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG V
Sbjct: 367 AKIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDV 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE++LD+IFS+FCIGK
Sbjct: 426 DVEEILDVIFSQFCIGK 442


>gi|167036429|ref|YP_001671660.1| tRNA modification GTPase TrmE [Pseudomonas putida GB-1]
 gi|189036205|sp|B0KRC0|MNME_PSEPG RecName: Full=tRNA modification GTPase mnmE
 gi|166862917|gb|ABZ01325.1| tRNA modification GTPase TrmE [Pseudomonas putida GB-1]
          Length = 456

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/461 (35%), Positives = 247/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+RLSGP   +  + I  +    PR A    F   DG +
Sbjct: 1   MNTVRETIAAIATAQGRGGVGIVRLSGPLAGKAGQLITGRTL-TPRHAHYGPFRDDDGLV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQV-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + GE S       + L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSKRVHSLTEALIALRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL+ +  ++ ++S+   +   G ++R+G  +VI G  NAGKSSL N LA
Sbjct: 179 -EEIDFLADGHVLSMLDAVRGELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSLLNQLA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRD+L   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFT 347
            +LL+ +  + +               P       I  K+DL   +   E+ D    + T
Sbjct: 298 RVLLVVDSTAPEASDPFALWPEFLDQRPDPAKVTLIRNKADLSGEHVGLEQCDDGHVTIT 357

Query: 348 ------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
                   GL+ L + +K+ +    +       + +RHL  L Q   +LE   A L    
Sbjct: 358 LSAKGDDTGLQLLRDHLKACM-GYEQTAESGFSARRRHLDALRQASEHLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|320157825|ref|YP_004190204.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio vulnificus
           MO6-24/O]
 gi|31340460|sp|Q8DDI1|MNME_VIBVU RecName: Full=tRNA modification GTPase mnmE
 gi|319933137|gb|ADV88001.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio vulnificus
           MO6-24/O]
          Length = 453

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 161/455 (35%), Positives = 243/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   QV   +   K    R A    F   DG  LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPQAAQVALEVTG-KTLKARYAEYLPFKAQDGSELDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTISGVRPARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ KD
Sbjct: 180 IDFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKD 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIRQADRVL 299

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    KEI        P+ I    I  K+D           ++     +S+ 
Sbjct: 300 FMVDGTTTDATDPKEIWPDFIDRLPEQIGITVIRNKADQTQESLGICHVSQPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G++ L N +K  +            + +RHL  L +   +L +     E     +I+
Sbjct: 360 TGQGVDALRNHLKECM-GFSGNSEGGFMARRRHLDALQRAAEHLLIGQEQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|224827182|ref|ZP_03700277.1| tRNA modification GTPase TrmE [Lutiella nitroferrum 2002]
 gi|224600575|gb|EEG06763.1| tRNA modification GTPase TrmE [Lutiella nitroferrum 2002]
          Length = 450

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/447 (36%), Positives = 248/447 (55%), Gaps = 18/447 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      + +IR+SG       + I   K P PR A+   F   DG  +D GL+
Sbjct: 9   TICAIATAPGRGGVGVIRVSGRGLLPFAQAISGGKTPQPRYATYSDFVAADGTAIDNGLM 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP P SFTGED  E   HGG  V+N +L    ++   RLA PGEF++RAF N K+DL 
Sbjct: 69  LYFPGPNSFTGEDVLELQGHGGPVVLNMLLSRCLEL-GARLAEPGEFTKRAFLNDKLDLA 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AES+ADLI + +E   + +++ + G  S    Q +D+L  +R  +EA LDF + E++  
Sbjct: 128 QAESVADLIDASSETAAKSALKSLKGAFSHEIHQLVDELITLRMLVEATLDFPD-EEIDF 186

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + +    +  ++  +S   +  + G I+R G  +V++G  N GKSSL NALA  DVAI
Sbjct: 187 LEAADARGKLGGVRARLSQVQATARQGAILREGMHVVLVGQPNVGKSSLLNALAGDDVAI 246

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTDI GTTRD L  ++ ++G  V + DTAG+R+TDD+VEK GI+RT+  V+ ADL+L+L 
Sbjct: 247 VTDIAGTTRDTLREEIVIDGVPVHVIDTAGLRDTDDVVEKIGIERTWQAVQRADLVLVLV 306

Query: 307 EINSKKEIS-------FPKNIDFIFIGTKSDL---YSTYTEEYDHLI---SSFTGEGLEE 353
           +                P+ +  +F+  K DL        EE  H +   S+ T  G+E 
Sbjct: 307 DSREGVGAEVSAILAKLPERLPRVFVFNKVDLSGEAPGLAEEDGHPVVRLSARTLAGVEL 366

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  K+  ++  +         + +RHL  + +   +L +A    +   +++ AE LRLA 
Sbjct: 367 LRAKLLEMIGYR-GASEGVFLARERHLDAIRRAAEHLALAETVWQQ--VELFAEELRLAQ 423

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L ++TG    + LL +IFS+FCIGK
Sbjct: 424 HALSEVTGEFTPDDLLGVIFSRFCIGK 450


>gi|306843478|ref|ZP_07476079.1| tRNA modification GTPase TrmE [Brucella sp. BO1]
 gi|306276169|gb|EFM57869.1| tRNA modification GTPase TrmE [Brucella sp. BO1]
          Length = 442

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 204/437 (46%), Positives = 296/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+G
Sbjct: 8   HDTIFALSSGRLPSGVAVIRISGPKTRFVYETICQ-AIPEPRHAALLTFRSRNGDAIDRG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+D
Sbjct: 67  LTLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE LADLI++ETE QRRL+++  SG    LY +W  +L + R+FIEA+LDF++E DV
Sbjct: 127 LTIAEGLADLIAAETEGQRRLALQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DV
Sbjct: 187 PGSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L 
Sbjct: 247 AIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLS 306

Query: 305 LKEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L++++    ++  K   +   IGTK+DL    +  + + IS+ TG GLE+L++ +++   
Sbjct: 307 LEDMSGPVPVTVEKIEAETWLIGTKADLGERASGLWKYRISTMTGSGLEQLLDALQAFAE 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG V
Sbjct: 367 AKIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDV 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE++LD+IFS+FCIGK
Sbjct: 426 DVEEILDVIFSQFCIGK 442


>gi|261823804|ref|YP_003261910.1| tRNA modification GTPase TrmE [Pectobacterium wasabiae WPP163]
 gi|261607817|gb|ACX90303.1| tRNA modification GTPase TrmE [Pectobacterium wasabiae WPP163]
          Length = 454

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 159/458 (34%), Positives = 247/458 (53%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M++  +TI A +T      + I+R+SG +  +V   I   K P PR A    F   +G  
Sbjct: 1   MSNT-DTIVAQATPPGRGGVGILRVSGRAAAEVAHAILG-KLPKPRHADYLPFRDTNGTT 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +PN+R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLPNVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++   G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTAIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------ 343
            +L + +  + +               PK +    +  K+D+        D         
Sbjct: 298 RVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGIEDVNTHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L + +K  +            + +RHL  L    ++L             
Sbjct: 358 SARTGEGVDTLRDHLKQSM-GFTSNTEGGFLARRRHLQALELAAQHLVQGKEQLVSAYAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|314940137|ref|ZP_07847317.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a04]
 gi|314943032|ref|ZP_07849836.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133C]
 gi|314948150|ref|ZP_07851546.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0082]
 gi|314953436|ref|ZP_07856354.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133A]
 gi|314993825|ref|ZP_07859161.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133B]
 gi|314998150|ref|ZP_07863032.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a01]
 gi|313587862|gb|EFR66707.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a01]
 gi|313591716|gb|EFR70561.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133B]
 gi|313594539|gb|EFR73384.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133A]
 gi|313598232|gb|EFR77077.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133C]
 gi|313640642|gb|EFS05222.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a04]
 gi|313645404|gb|EFS09984.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0082]
          Length = 485

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 144/463 (31%), Positives = 248/463 (53%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG    Q+ + +     K      S    +G    
Sbjct: 24  ITLEFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSHTIHYGHIVD 83

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               +++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF+
Sbjct: 84  PKSNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFT 142

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E 
Sbjct: 143 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEV 202

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSS
Sbjct: 203 NIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSS 262

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+  
Sbjct: 263 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRK 322

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE---------EY 339
            +  ADLILL+           ++ +     +  I +  K+DL +   +         E 
Sbjct: 323 ALAEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEP 382

Query: 340 DHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NE 397
              IS    +GL+ L + I  +    +  +   +  S+ RH+  L +    LE      +
Sbjct: 383 VFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTRHIALLEKASLSLEEVIAGID 442

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 443 SGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 485


>gi|313635544|gb|EFS01763.1| tRNA modification GTPase TrmE [Listeria seeligeri FSL N1-067]
          Length = 457

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 151/457 (33%), Positives = 246/457 (53%), Gaps = 21/457 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K      AS    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAASHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPKTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   +++AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALKDAD 300

Query: 301 LILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEE---------YDHLISS 345
            ILL+   N +  I            +++ +  K+DL      E              S 
Sbjct: 301 FILLVLNQNEELTIEDEALFEAASGHNYVVVLNKTDLEQKLDIERVRELAGANPVVETSL 360

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLD 403
              EGLE L + IK++           +  S+ RH+  L Q +  L   +   +    +D
Sbjct: 361 IKDEGLEALEDAIKTLFFAGDIDAGDATYVSNVRHIALLHQALESLNAVTTGIQLGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 421 IVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|50123364|ref|YP_052531.1| tRNA modification GTPase TrmE [Pectobacterium atrosepticum
           SCRI1043]
 gi|81643492|sp|Q6CYQ9|MNME_ERWCT RecName: Full=tRNA modification GTPase mnmE
 gi|49613890|emb|CAG77342.1| probable tRNA modification GTPase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 454

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 158/458 (34%), Positives = 247/458 (53%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M++  +TI A +T      + I+R+SG +  +V   +   K P PR A    F   +G  
Sbjct: 1   MSNT-DTIVAQATPPGRGGVGILRVSGQAAAEVAHAVLG-KLPKPRHADYLPFRDTNGTT 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +PN+R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLPNVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++   G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVMADLDAVRTEAHQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTAIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------ 343
            +L + +  + +               PK +    +  K+D+        D         
Sbjct: 298 RVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGIADVNTHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L + +K  +            + +RHL  L    ++L             
Sbjct: 358 SARTGEGVDTLRDHLKQSM-GFTSNTEGGFLARRRHLQALELAAQHLIQGKEQLVSAYAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|290477349|ref|YP_003470270.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Xenorhabdus bovienii SS-2004]
 gi|289176703|emb|CBJ83512.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Xenorhabdus bovienii SS-2004]
          Length = 454

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 161/458 (35%), Positives = 249/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      + I+R+SGP   +V E +   K P PR A    F  +DG +
Sbjct: 1   MNTT-DTIVAQATPPGRGGVGILRISGPKAAEVAEVVLG-KLPKPRYADYLPFRDVDGTV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +  +R+ANPGEFS RAF N
Sbjct: 59  LDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTISAVRIANPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R +M  + G  S    Q ++ LT++R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAMNSLQGTFSHQVHQMVEALTNLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  ++    SQ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEARLDEVIEELDHVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLI 343
            +L + +  +   +             P ++    I  K+D+    T   +        +
Sbjct: 298 RVLFMVDSTTTDAVEPAKIWPEFMAKLPASLPVTVIRNKTDMTGEETGVLEVSGYSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+  G+G++ L + +K  +            + +RHL  L+    +L+            
Sbjct: 358 SAREGKGIDLLRDHLKEAM-GFNSNTEGGFLARRRHLQALNTAAEHLQEGHQQLVFARSG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQVLCEITGEFTSDDLLGRIFSSFCIGK 454


>gi|255068623|ref|ZP_05320478.1| tRNA modification GTPase TrmE [Neisseria sicca ATCC 29256]
 gi|255047121|gb|EET42585.1| tRNA modification GTPase TrmE [Neisseria sicca ATCC 29256]
          Length = 454

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 164/458 (35%), Positives = 256/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  + TI A++T      + +IRLSG +   + + +   K P PR A    F G DG+ 
Sbjct: 1   MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGQP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+L+ F +P SFTGED  E   HG   V++ +L    ++   R+A PGEF++RAF N
Sbjct: 61  IDNGILLYFAAPASFTGEDVIELQGHGSPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + ++   R+++  + G  S    + +D L  +R  +EA LDF E
Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  + + ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 180 -EDIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D+AIVTDI GTTRD +   + L+G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDL-----------YSTYTEEYDHL 342
           + L+L +    +N+K +    S P+ +  I I  K+DL            +    E    
Sbjct: 299 VALILIDPREGVNAKTQAILNSLPEGLKKIEIHNKADLTGEPVAVRSDGLAQTGAETVIS 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TG GL+ L + +   +  +  +      +  RHL  L +    LE A+L + +  +
Sbjct: 359 LSAKTGAGLDLLKHALLQEVGWQ-GESESLFLARSRHLNALHEAETELENAALCDNNQ-I 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ AE+LRLA  +  +ITG    + LL +IFS+FCIGK
Sbjct: 417 ELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454


>gi|227354815|ref|ZP_03839232.1| tRNA modification GTPase [Proteus mirabilis ATCC 29906]
 gi|227165133|gb|EEI49964.1| tRNA modification GTPase [Proteus mirabilis ATCC 29906]
          Length = 454

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/456 (35%), Positives = 249/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H  +TI A +T      + I+R+SGP    V + I   K P PR A    F   D  +LD
Sbjct: 2   HSTDTIVAQATPPGRGGVGILRVSGPKAAVVAQTILG-KVPKPRYADYLPFRNEDNSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP+P SFTGED  E   HGG  +++ +L+ + ++P +R+A PGEFS RAF N K
Sbjct: 61  QGIALFFPNPNSFTGEDVLELQGHGGPIILDLLLKRILQIPGIRIAKPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  SS   + ++ LT++R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAINSLQGAFSSHINEMVESLTNLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S   +   +  + + +    +Q + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGVIEGKLNTVISQLDDVRAQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKE-----------INSKKEISFPKNIDFIFIGTKSDL---YSTYTEEYDHLI---SS 345
           L + +           I  +     P  +    I  KSDL    +  T + D+ +   S+
Sbjct: 300 LFMVDSTTTEATTPEEIWPEFMARLPSTLPVTVIRNKSDLTGEPAEITSQGDYPMIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
             G G+E L + +K  +            + +RHL  L+    +L+            ++
Sbjct: 360 RDGMGIELLRSHLKEAM-GFNSNTEGGFLARRRHLQALNTAAEHLQQGYQQLVYAKSGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|323496919|ref|ZP_08101947.1| tRNA modification GTPase TrmE [Vibrio sinaloensis DSM 21326]
 gi|323317993|gb|EGA70976.1| tRNA modification GTPase TrmE [Vibrio sinaloensis DSM 21326]
          Length = 453

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/455 (35%), Positives = 245/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP    V   +   K   PR A    F   DG  +D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPLAATVALEVTG-KTLRPRYAEYLPFTATDGTQIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +P +R A PGEFS RAF N K+
Sbjct: 61  GIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILDIPGIRTARPGEFSERAFLNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G  S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLAQAEAIADLIDASSEEAAKSALQSLQGAFSQRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSADLQAIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVL 299

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    KEI        P NI    I  K+D  +         +     +S+ 
Sbjct: 300 FMVDGTTTDATDPKEIWPDFVDRLPDNIGMTVIRNKADQTNEDLGICHVNDPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G+E L N +K  +            + +RHL  L +   +L++     E     +I+
Sbjct: 360 TGQGVESLRNHLKECM-GFAGGNEGGFMARRRHLEALERAAEHLDIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLSEITGEFSSDDLLGRIFSSFCIGK 453


>gi|51598233|ref|YP_072424.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP
           32953]
 gi|186897489|ref|YP_001874601.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis PB1/+]
 gi|81638080|sp|Q663S6|MNME_YERPS RecName: Full=tRNA modification GTPase mnmE
 gi|254811499|sp|B2K868|MNME_YERPB RecName: Full=tRNA modification GTPase mnmE
 gi|51591515|emb|CAH23187.1| putative thiophene and furan oxidation protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186700515|gb|ACC91144.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis PB1/+]
          Length = 454

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 159/456 (34%), Positives = 245/456 (53%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      + I+R+SG +  +V   +   K P PR A    F  +DG  LD
Sbjct: 2   STTDTIVAQATPPGRGGVGILRVSGRAASEVAHAVLG-KLPKPRYADYLPFKDVDGSTLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE +D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADRV 299

Query: 303 LLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +                 P  +    +  K+D+       +         +S+
Sbjct: 300 LFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTKVNGHSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L + +K  +            + +RHL  L    R+L             ++
Sbjct: 360 RTGEGIDLLRDHLKQSM-GFTSNTEGGFLARRRHLQALETAARHLVQGHEQLVSAYAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|116053718|ref|YP_794045.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122256262|sp|Q02DE1|MNME_PSEAB RecName: Full=tRNA modification GTPase mnmE
 gi|115588939|gb|ABJ14954.1| putative GTPase for tRNA modification and thiophene and furan
           oxidation [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 455

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 157/459 (34%), Positives = 244/459 (53%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    ETI A++T      + I+R+SGP   Q+   +  ++    R A    F    G++
Sbjct: 1   MQAATETIVAIATAQGRGGVGIVRISGPLAGQIAVAVSGRQL-KARHAHYGPFLDAGGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GL + FP P SFTGED  E   HGG  V++ +++   ++   R A PGEFS RAF N
Sbjct: 60  IDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLEL-GARQARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + GE S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  ++ ++S+   +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+T+D VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSD-------LYSTYTEEYDHL 342
            +LL+ +  + +               P+      I  K+D       L  +        
Sbjct: 298 RVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIGLEESADGHVTIT 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TG GLE L   +K+ +  + +       + +RHL  L Q  + LE         G 
Sbjct: 358 LSARTGAGLELLREHLKACMGFE-QTAESGFSARRRHLEALRQAGQALEHGHSQLIHNGA 416

Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LR A   LG+ITG    + LL  IFS FCIGK
Sbjct: 417 GELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455


>gi|332163526|ref|YP_004300103.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318608032|emb|CBY29530.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667756|gb|ADZ44400.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861751|emb|CBX71925.1| tRNA modification GTPase mnmE [Yersinia enterocolitica W22703]
          Length = 454

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 159/456 (34%), Positives = 243/456 (53%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      + I+R+SG +   V + +   K P PR A    F  +DG  LD
Sbjct: 2   STTDTIVAQATPPGRGGVGILRVSGRAAATVAQAVLG-KLPKPRYADYLPFKDVDGSTLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQADRV 299

Query: 303 LLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +                 P  +    +  K+D+       +         +S+
Sbjct: 300 LFMVDGTTTDATEPATIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +            + +RHL  L    ++L             ++
Sbjct: 360 RTGEGIDLLRNHLKQSM-GFTSNTEGGFLARRRHLQALETAAQHLAQGHEQLVSAYAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|119773150|ref|YP_925890.1| tRNA modification GTPase TrmE [Shewanella amazonensis SB2B]
 gi|166234819|sp|A1S1G4|MNME_SHEAM RecName: Full=tRNA modification GTPase mnmE
 gi|119765650|gb|ABL98220.1| tRNA modification GTPase TrmE [Shewanella amazonensis SB2B]
          Length = 453

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/455 (35%), Positives = 249/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P PR A    F   DG ++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGKLASDVAHTLLG-HLPKPRYADFCDFKAADGSVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ ++  + K+  +R+A PGEFS +AF N K+
Sbjct: 61  GIALFFKGPNSFTGEDVLELQGHGGQVVMDMLIRAVLKVKGVRIARPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + ++  + GE S+     +DK+T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALHSLQGEFSTQVHTLVDKITNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++   +  + + +    +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIAAALYAIIDQLDEVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDEVERIGIERAWSEIASADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSF 346
            + +      +             PK +    +  K+DL     E  +      + IS+ 
Sbjct: 300 FMVDGTDTAAVDPHEIWPDFIDRLPKAMGVTVVRNKADLTGEPLEATEEQGYSVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G++ L   +KS++  +   L     + +RHL  L Q   +L++  +  E     +++
Sbjct: 360 TGLGVDALKQHLKSLMGYQ-SNLEGGFIARRRHLEALEQASEHLQLGKVQLEVYLAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMAQQALSEITGEFTSDDLLGKIFSSFCIGK 453


>gi|256060026|ref|ZP_05450208.1| tRNA modification GTPase TrmE [Brucella neotomae 5K33]
 gi|261324003|ref|ZP_05963200.1| tRNA modification GTPase mnmE [Brucella neotomae 5K33]
 gi|261299983|gb|EEY03480.1| tRNA modification GTPase mnmE [Brucella neotomae 5K33]
          Length = 442

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 205/437 (46%), Positives = 297/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+G
Sbjct: 8   HDTIFALSSGRLPSGVAVIRISGPKTRFVYETICQ-AIPEPRHAALLTFRSRNGDAIDRG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+D
Sbjct: 67  LTLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGYRIAEAGEFTRRAFANGKMD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV
Sbjct: 127 LTIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DV
Sbjct: 187 PGSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L 
Sbjct: 247 AIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLS 306

Query: 305 LKEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++   
Sbjct: 307 LEDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAE 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG V
Sbjct: 367 AKIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDV 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE++LD+IFS+FCIGK
Sbjct: 426 DVEEILDVIFSQFCIGK 442


>gi|28896776|ref|NP_796381.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838496|ref|ZP_01991163.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AQ3810]
 gi|260361954|ref|ZP_05774959.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus K5030]
 gi|260876535|ref|ZP_05888890.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AN-5034]
 gi|260897408|ref|ZP_05905904.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus Peru-466]
 gi|31340459|sp|Q87TR6|MNME_VIBPA RecName: Full=tRNA modification GTPase mnmE
 gi|28804984|dbj|BAC58265.1| thiophene and furan oxidation protein ThdF [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149748119|gb|EDM58978.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AQ3810]
 gi|308087879|gb|EFO37574.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus Peru-466]
 gi|308090361|gb|EFO40056.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AN-5034]
 gi|308114188|gb|EFO51728.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus K5030]
 gi|328471230|gb|EGF42132.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 10329]
          Length = 453

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 160/455 (35%), Positives = 245/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   QV   +   K   PR A    F   DG +LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPKANQVALEVTG-KTLKPRYAEYLPFQAEDGTVLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+
Sbjct: 61  GIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIAGVRAARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVL 299

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    KEI        P++I    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTDATDPKEIWPDFVDRLPESIGMTVIRNKADQTGEDMGICHVNDPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G++ L N +K  +            + +RHL  L +  ++L++     E     +I+
Sbjct: 360 TGAGVDALRNHLKECM-GFSGNTEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|104784446|ref|YP_610944.1| tRNA modification GTPase TrmE [Pseudomonas entomophila L48]
 gi|122401168|sp|Q1I2H5|MNME_PSEE4 RecName: Full=tRNA modification GTPase mnmE
 gi|95113433|emb|CAK18161.1| tRNA modification GTPase [Pseudomonas entomophila L48]
          Length = 456

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 164/461 (35%), Positives = 247/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+RLSGP   Q  + I  +    PR A    F   DG +
Sbjct: 1   MNTVRETIAAIATAQGRGGVGIVRLSGPLASQAGQAITGRTL-TPRHAHYGPFRDADGLV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALFFPGPNSFTGEDVLELQGHGGPVVMDMLLQRCLQL-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       + L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSTQAARNALRSLQGAFSKRVHGLTEALIALRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  +++++S+   +   G ++R+G  +VI G  NAGKSSL N LA
Sbjct: 179 -EEIDFLADGHVLRMLDDVRSELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSLLNQLA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYT--EEYDHLISSFT 347
            +LL+ +  + +               P       I  K+DL   +   E+ D    + T
Sbjct: 298 RVLLVVDSTAPEASDPFALWPEFLDQRPDVAKVTLIRNKADLSGEHVGMEQSDDGHVTIT 357

Query: 348 ------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
                   GL+ L + +K+ +    +    S  + +RHL  L Q   +LE   A L    
Sbjct: 358 LSAREDDMGLDLLRDHLKACM-GYEQTAESSFSARRRHLEALRQASAHLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|163844080|ref|YP_001628484.1| tRNA modification GTPase TrmE [Brucella suis ATCC 23445]
 gi|205829122|sp|B0CJG2|MNME_BRUSI RecName: Full=tRNA modification GTPase mnmE
 gi|163674803|gb|ABY38914.1| tRNA modification GTPase TrmE [Brucella suis ATCC 23445]
          Length = 442

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 204/437 (46%), Positives = 297/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+G
Sbjct: 8   HDTIFALSSGRLPSGVAVIRISGPKTRFVYETICQ-AIPEPRHAALLTFRSRNGDAIDRG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + FP+P +FTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+D
Sbjct: 67  LTLFFPAPHTFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE LADLI++ETE QRRL+M+  SG    LY +W  +L + R+FIEA+LDF++E DV
Sbjct: 127 LTIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DV
Sbjct: 187 PGSVSMQVWQQLSALKHEIEYHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L 
Sbjct: 247 AIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSLVEKIGIERARARMAEADLVLS 306

Query: 305 LKEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L++++    ++  K   +   IGTK+DL  + +  + + IS+ TG GLE+L++ +++   
Sbjct: 307 LEDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAE 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG V
Sbjct: 367 AKIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDV 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE++LD+IFS+FCIGK
Sbjct: 426 DVEEILDVIFSQFCIGK 442


>gi|294671265|ref|ZP_06736117.1| hypothetical protein NEIELOOT_02974 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306992|gb|EFE48235.1| hypothetical protein NEIELOOT_02974 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 454

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 164/458 (35%), Positives = 256/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  + TI A++T      + +IRLSG +   + + +   K P PR A    F G DG+ 
Sbjct: 1   MSATQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGQP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+L+ F +P SFTGED  E   HGG  V++ +L    ++   R+A PGEF++RAF N
Sbjct: 61  IDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + ++   R+++  + G  S    + +D L  +R  +EA LDF E
Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  + + ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 180 -EDIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D+AIVTDI GTTRD +   + L+G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDL-----------YSTYTEEYDHL 342
           + L+L +    +N+K +    S P  +  I I  K+DL            +    +    
Sbjct: 299 VALILIDPREGVNAKTQAILNSLPAGLKKIEIHNKADLTGEPVAVRSDGLAQTGADTVIS 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TG GL+ L + +   +  +  +      +  RHL  L +    LE A+L + +  +
Sbjct: 359 LSAKTGAGLDLLKHALLQEVGWQ-GESESLFLARSRHLNALHKAEAELENAALCDNNQ-I 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ AE+LRLA  +  +ITG    + LL +IFS+FCIGK
Sbjct: 417 ELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454


>gi|197286945|ref|YP_002152817.1| tRNA modification GTPase TrmE [Proteus mirabilis HI4320]
 gi|254811490|sp|B4F0U0|MNME_PROMH RecName: Full=tRNA modification GTPase mnmE
 gi|194684432|emb|CAR46143.1| probable tRNA modification GTPase [Proteus mirabilis HI4320]
          Length = 454

 Score =  443 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/456 (35%), Positives = 249/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H  +TI A +T      + I+R+SGP    V + I   K P PR A    F   D  +LD
Sbjct: 2   HSTDTIVAQATPPGRGGVGILRVSGPKAAVVAQTILG-KVPKPRYADYLPFRNEDNSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP+P SFTGED  E   HGG  +++ +L+ + ++P +R+A PGEFS RAF N K
Sbjct: 61  QGIALFFPNPNSFTGEDVLELQGHGGPIILDLLLKRILQIPGIRIAKPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  SS   + ++ LT++R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAINSLQGAFSSHINEMVESLTNLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S   +   +  + + +    +Q + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGVIEGKLNTVISQLDDVRTQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 299

Query: 303 LLLKE-----------INSKKEISFPKNIDFIFIGTKSDL---YSTYTEEYDHLI---SS 345
           L + +           I  +     P  +    I  KSDL    +  T + D+ +   S+
Sbjct: 300 LFMVDSTTTEATTPEEIWPEFMARLPSTLPVTVIRNKSDLTGEPAEITSQGDYPMIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
             G G+E L + +K  +            + +RHL  L+    +L+            ++
Sbjct: 360 RDGMGIELLRSHLKEAM-GFNSNTEGGFLARRRHLQALNTAAEHLQQGYQQLVYAKSGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|78486532|ref|YP_392457.1| tRNA modification GTPase TrmE [Thiomicrospira crunogena XCL-2]
 gi|78364818|gb|ABB42783.1| tRNA modification GTPase trmE [Thiomicrospira crunogena XCL-2]
          Length = 475

 Score =  443 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 153/452 (33%), Positives = 251/452 (55%), Gaps = 18/452 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A++T      + I+R+SG    ++ E +   K P PR A    F G +G++LD
Sbjct: 28  STNDTIAAIATAPGRGGVGIVRVSGIKAAEIAEHVLG-KCPKPRYAHYGPFLGAEGQVLD 86

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP+P SFTGE+  E   HGG  ++  +LE + ++   RLA PGEFS++AF N K
Sbjct: 87  QGIALFFPNPHSFTGENVLELQGHGGPVILQWLLERVVQL-GARLAEPGEFSKQAFLNDK 145

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + ++   R ++  + G+ S+   + +++L  +R ++EA +DF E E
Sbjct: 146 LDLAQAEAIADLIDASSQQAARSALRSLQGDFSNQVNELVEQLIQLRIYVEAAIDFPE-E 204

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  +V   +  +   +   ++  + G ++R G  +VILG  NAGKSSL NAL+ +
Sbjct: 205 EIDFLSDGKVAGQLQHILEQLHRVLASAQQGVLLREGMSVVILGRPNAGKSSLLNALSGR 264

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRD++  ++ ++G  + + DTAG+RE  D VE+ GI+R +  +E AD I
Sbjct: 265 ESAIVTDIAGTTRDIVKEEIQIDGMPLHVLDTAGLREATDAVEQIGIQRAWAAIEEADRI 324

Query: 303 LLLKEIN-----SKKEI--SFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGE 349
           L++ + N       + I    P +I    I  K DL     E      E +  +S+    
Sbjct: 325 LVMVQANEAIHPEDQAILEKMPSHIPVTLIHNKIDLIEKSPELSENDGETEIWLSAKHHL 384

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAEN 408
           GL+ L   +K+ +    +       + KRHL  L   + ++E      E     +++AE+
Sbjct: 385 GLDLLKQHLKTEM-GYAQTEEGVFMARKRHLEALETALHFVETGQQQLEHFAAGELLAED 443

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LR A  +L +ITG    + LL  IF+ FCIGK
Sbjct: 444 LRQAQQALSEITGQFTSDDLLGRIFTSFCIGK 475


>gi|123444347|ref|YP_001008312.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166234832|sp|A1JT87|MNME_YERE8 RecName: Full=tRNA modification GTPase mnmE
 gi|122091308|emb|CAL14194.1| putative thiophene and furan oxidation protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 454

 Score =  443 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 159/456 (34%), Positives = 243/456 (53%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      + I+R+SG +   V + +   K P PR A    F  +DG  LD
Sbjct: 2   STTDTIVAQATPPGRGGVGILRVSGRAAATVAQAVLG-KLPKPRYADYLPFKDVDGSTLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQADRV 299

Query: 303 LLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +                 P  +    +  K+D+       +         +S+
Sbjct: 300 LFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +            + +RHL  L    ++L             ++
Sbjct: 360 RTGEGIDLLRNHLKQSM-GFTSNTEGGFLARRRHLQALETAAQHLAQGHEQLVSAYAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|323341065|ref|ZP_08081313.1| tRNA modification GTPase TrmE [Lactobacillus ruminis ATCC 25644]
 gi|323091486|gb|EFZ34110.1| tRNA modification GTPase TrmE [Lactobacillus ruminis ATCC 25644]
          Length = 462

 Score =  443 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 144/459 (31%), Positives = 241/459 (52%), Gaps = 22/459 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRI- 60
            E +TI A+ST     AISI+R+SG     + + +   K     +  ++ Y   +D +  
Sbjct: 5   TEFDTIAAISTPPGEGAISIVRMSGEEAVSIAQKVFSGKDLTQAKSHTINYGHIVDPKTH 64

Query: 61  --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ ++ +  +P++FT ED  E + HGGI   N IL+ L  +   RLA PGEF++RAF
Sbjct: 65  EEIDEVMVSLMLAPKTFTREDVVEINCHGGIVATNRILQ-LLLVNGARLAEPGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            +G+IDL +AES+ DLI ++T+   ++++  + G LS L       +  + + +E ++D+
Sbjct: 124 LHGRIDLTQAESVMDLIRAKTDRSMKIALNQLDGNLSHLIDSLRKDILDVLAQVEVNIDY 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  ++K +    + +K  I   +     G+I+R G    ++G  N GKSSL N 
Sbjct: 184 PEYDDVEEMTTKLLKEKAIEIKQRIEQLLKTASQGKIMREGLATALVGRPNVGKSSLLNH 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVTD+ GTTRDV+   +++ G  +K+ DTAGIRETDD VEK G++R+   +E 
Sbjct: 244 LLHEDKAIVTDVAGTTRDVIEEYVNVSGVPLKLIDTAGIRETDDKVEKIGVERSKKAIEQ 303

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHLI 343
           +DL+LL+            + I    +   I I  K+DL      +           +  
Sbjct: 304 SDLVLLVLNAAESLTKEDLELIRLTNDKKRIIILNKTDLEEKLDRKELAKISGNAPVYAT 363

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASL-NEKDCG 401
           S    EG+E L   I  +  N  +    + + ++ RH+  L +    L+           
Sbjct: 364 SILKNEGVEALEEAISKLFFNGIENSQSTVMVTNARHIALLEKAQNSLDSVLEGISSGMP 423

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++  A   LG+ITG    ++LLD +FS+FC+GK
Sbjct: 424 VDLVQIDMTEAWNLLGEITGESYEDELLDQLFSQFCLGK 462


>gi|22127986|ref|NP_671409.1| tRNA modification GTPase TrmE [Yersinia pestis KIM 10]
 gi|45443733|ref|NP_995272.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Microtus str.
           91001]
 gi|108810138|ref|YP_654054.1| tRNA modification GTPase TrmE [Yersinia pestis Antiqua]
 gi|108814120|ref|YP_649887.1| tRNA modification GTPase TrmE [Yersinia pestis Nepal516]
 gi|145601169|ref|YP_001165245.1| tRNA modification GTPase TrmE [Yersinia pestis Pestoides F]
 gi|150260963|ref|ZP_01917691.1| putative thiophene and furan oxidation protein [Yersinia pestis
           CA88-4125]
 gi|162421232|ref|YP_001608454.1| tRNA modification GTPase TrmE [Yersinia pestis Angola]
 gi|165926155|ref|ZP_02221987.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939964|ref|ZP_02228501.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009545|ref|ZP_02230443.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213299|ref|ZP_02239334.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401538|ref|ZP_02307032.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422868|ref|ZP_02314621.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425489|ref|ZP_02317242.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229839810|ref|ZP_04459969.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229841895|ref|ZP_04462051.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229896772|ref|ZP_04511935.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis Pestoides A]
 gi|229904660|ref|ZP_04519771.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis Nepal516]
 gi|270488372|ref|ZP_06205446.1| tRNA modification GTPase TrmE [Yersinia pestis KIM D27]
 gi|294505627|ref|YP_003569689.1| tRNA modification GTPase [Yersinia pestis Z176003]
 gi|123073044|sp|Q1CCJ3|MNME_YERPN RecName: Full=tRNA modification GTPase mnmE
 gi|123245359|sp|Q1C0B3|MNME_YERPA RecName: Full=tRNA modification GTPase mnmE
 gi|166234833|sp|A4TSL0|MNME_YERPP RecName: Full=tRNA modification GTPase mnmE
 gi|254811500|sp|A9R5S1|MNME_YERPG RecName: Full=tRNA modification GTPase mnmE
 gi|21961132|gb|AAM87660.1|AE014013_5 GTP-binding protein [Yersinia pestis KIM 10]
 gi|45438603|gb|AAS64149.1| GTP-binding protein [Yersinia pestis biovar Microtus str. 91001]
 gi|108777768|gb|ABG20287.1| tRNA modification GTPase trmE [Yersinia pestis Nepal516]
 gi|108782051|gb|ABG16109.1| tRNA modification GTPase trmE [Yersinia pestis Antiqua]
 gi|145212865|gb|ABP42272.1| tRNA modification GTPase trmE [Yersinia pestis Pestoides F]
 gi|149290371|gb|EDM40448.1| putative thiophene and furan oxidation protein [Yersinia pestis
           CA88-4125]
 gi|162354047|gb|ABX87995.1| tRNA modification GTPase TrmE [Yersinia pestis Angola]
 gi|165912090|gb|EDR30730.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165922015|gb|EDR39192.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165991467|gb|EDR43768.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205597|gb|EDR50077.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958260|gb|EDR55281.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167048920|gb|EDR60328.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055503|gb|EDR65296.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229678778|gb|EEO74883.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis Nepal516]
 gi|229691234|gb|EEO83287.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229696176|gb|EEO86223.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229700210|gb|EEO88246.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis Pestoides A]
 gi|262363792|gb|ACY60513.1| tRNA modification GTPase [Yersinia pestis D106004]
 gi|262367728|gb|ACY64285.1| tRNA modification GTPase [Yersinia pestis D182038]
 gi|270336876|gb|EFA47653.1| tRNA modification GTPase TrmE [Yersinia pestis KIM D27]
 gi|294356086|gb|ADE66427.1| tRNA modification GTPase [Yersinia pestis Z176003]
 gi|320017433|gb|ADW01005.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 454

 Score =  443 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 159/456 (34%), Positives = 245/456 (53%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      + I+R+SG +  +V   +   K P PR A    F  +DG  LD
Sbjct: 2   STTDTIVAQATPPGRGGVGILRVSGRAASEVAHAVLG-KLPKPRYADYLPFKDVDGSTLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE +D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADRV 299

Query: 303 LLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +                 P  +    +  K+D+       +         +S+
Sbjct: 300 LFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTKVNGHSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L + +K  +            + +RHL  L    R+L             ++
Sbjct: 360 RTGEGIDLLRDHLKQSM-GFTSNTEGGFLARRRHLQALETAARHLIQGHEQLVSAYAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|289436062|ref|YP_003465934.1| tRNA modification GTPase TrmE [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289172306|emb|CBH28852.1| tRNA modification GTPase TrmE [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 457

 Score =  443 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 151/457 (33%), Positives = 246/457 (53%), Gaps = 21/457 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K      AS    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAASHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPKTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   +++AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALKDAD 300

Query: 301 LILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEE---------YDHLISS 345
            ILL+   N +  I            +++ +  K+DL      E              S 
Sbjct: 301 FILLVLNQNEELTIEDEALFEAASGHNYVVVLNKTDLEQRLDIERVRELAGANPVVETSL 360

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLD 403
              EGLE L + IK++           +  S+ RH+  L Q +  L   +   +    +D
Sbjct: 361 IKDEGLEALEDAIKTLFFAGDIDAGDATYVSNVRHIALLHQALESLNAVTTGIQLGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 421 IVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|54307239|ref|YP_128259.1| tRNA modification GTPase TrmE [Photobacterium profundum SS9]
 gi|81828901|sp|Q6LW56|MNME_PHOPR RecName: Full=tRNA modification GTPase mnmE
 gi|46911659|emb|CAG18457.1| Putative thiophene and furan oxidation protein ThdF [Photobacterium
           profundum SS9]
          Length = 455

 Score =  443 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 158/458 (34%), Positives = 244/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      + IIR+SGP   +V   +  ++    R A    F   DG  
Sbjct: 1   MNEYTDTIVAQATPPGRGGVGIIRVSGPKAKEVALAVAGRELKT-RYAEYLPFKNEDGSA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F  P SFTGED  E   HGG  +++ ++  + K+  +R A PGEFS RAF N
Sbjct: 60  LDQGIALFFKGPNSFTGEDVLELQGHGGPVLMDMMIRRILKLEGIRPARPGEFSERAFMN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + +   + G  S+   + ++ + H+R ++EA +DF E
Sbjct: 120 DKLDLAQAEAIADLIDASSEEAAKSAFRSLQGAFSTKVNELVEAVIHLRIYVEAAIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  +V ND+  + +++ +   +   G IIR G K+VI G  NAGKSSL NAL+
Sbjct: 180 -EEIDFLSDGKVSNDLHGIIDNLEAVRREANQGSIIREGMKVVIAGRPNAGKSSLLNALS 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            KD AIVTDI GTTRDVL   + ++G  + I DTAG+RE  + VE+ GI+R + E++ AD
Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASNEVERIGIERAWEEIQQAD 298

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST------YTEEYDHLI 343
            +L + +  +  +              P+++    I  K +L                 +
Sbjct: 299 RVLFMVDGTTTNDTDPKDIWPDFIERLPESMGLTVIRNKVELTGEAAGICHVNNPPLIRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402
           S+ TGEG++ L   +K  +            + +RHL  L Q  ++LE+     +     
Sbjct: 359 SARTGEGIDSLREHLKDCM-GFSGTTEGGFMARRRHLEALEQAAQHLEIGKEQLEGFMAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I+AE LRLA   L +ITG    + LL  IF+ FCIGK
Sbjct: 418 EILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|330987014|gb|EGH85117.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 456

 Score =  443 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 166/461 (36%), Positives = 246/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +  P PR A    F    G+ 
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLASKAAEAIIGR-TPKPRFAHYGPFVDKAGQT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|209551502|ref|YP_002283419.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209537258|gb|ACI57193.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 437

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 211/437 (48%), Positives = 293/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI+A+S+GA PS +S++R+SGP    +   +     P  R A  R     + + +D G
Sbjct: 3   HDTIYALSSGATPSGVSVVRISGPLTKDILVGLVGS-VPTARYAVRRTIRNRNNQPIDSG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGED AE  +HG  AV+  + E L ++P +R+A  GEFSRRAFENGK+D
Sbjct: 62  LVLFFPGPHSFTGEDVAELQLHGSKAVLAALFEALCELPGVRMAVEGEFSRRAFENGKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L+E E LADLI +ETEMQRRL++E  +G LS +Y  W ++LT  R+ IEA+LDF +E+DV
Sbjct: 122 LVEVEGLADLIGAETEMQRRLAVEQSAGGLSLIYDSWAERLTRARALIEAELDFPDEDDV 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S  V  ++  L+ DI  H+S    GEIIR+G+K+VI G  NAGKSSL NALA++DV
Sbjct: 182 PGSVSDMVWAEMERLRQDIGQHLSAASAGEIIRDGFKVVIAGAPNAGKSSLLNALARRDV 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL +DLD++GYLVK+ DTAG+RE DD VE EG++R  + + +ADL+LL
Sbjct: 242 AIVTDIAGTTRDVLQVDLDIDGYLVKLYDTAGLREADDRVEMEGVRRARVALRDADLVLL 301

Query: 305 LKEINSK-KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L ++ +        +    + +GTK DL    +  YD  IS+ TGEGL EL   I + ++
Sbjct: 302 LVDMTNPLLPDDLDQAAPHVTVGTKKDLVDVVSGHYDLQISTATGEGLSELRQVIGNSVA 361

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            +F  L  +IPS +RH   L++ +  LE+A ++  D  L++  E LR+A+  LG+ITG V
Sbjct: 362 TRFTGLSMAIPSRQRHKDSLAKCLTALEIA-ISATDVNLELRTEQLRIAADYLGRITGRV 420

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVEQLL +IFS+FCIGK
Sbjct: 421 DVEQLLGVIFSEFCIGK 437


>gi|90413741|ref|ZP_01221729.1| tRNA modification GTPase [Photobacterium profundum 3TCK]
 gi|90325210|gb|EAS41707.1| tRNA modification GTPase [Photobacterium profundum 3TCK]
          Length = 455

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 159/458 (34%), Positives = 243/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      + IIR+SGP   +V   +  ++    R A    F   DG  
Sbjct: 1   MNEHTDTIVAQATPPGRGGVGIIRVSGPKAKEVALAVAGRELKT-RYAEYLPFKNEDGTA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F +P SFTGED  E   HGG  +++ ++  + K+  +R A PGEFS RAF N
Sbjct: 60  LDQGIALFFKAPNSFTGEDVLELQGHGGPVLIDMMIRRILKLDGIRPARPGEFSERAFMN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + + + + G  S+   + ++ + H+R ++EA +DF E
Sbjct: 120 DKLDLTQAEAIADLIDASSEEAAKSAFKSLQGVFSTKVNELVEAVIHLRIYVEAAIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  +V ND+  + + + +   +   G IIR G K+VI G  NAGKSSL NAL+
Sbjct: 180 -EEIDFLSDGKVSNDLHAIIDTLKAVRREANQGSIIREGMKVVIAGRPNAGKSSLLNALS 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            KD AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E++ AD
Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWEEIQQAD 298

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYDHLI------ 343
            +L + +  +  +              P ++    I  K +L                  
Sbjct: 299 RVLFMVDGTTTNDTDPKDIWPDFIERLPASMGLTVIRNKVELTGEAAGICHVNNPTLVRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402
           S+ TGEG++ L   +K  +            + +RHL  L Q  ++LE+     +     
Sbjct: 359 SALTGEGVDSLREHLKECM-GFSGTTEGGFMARRRHLEALEQAAQHLEIGKEQLEGFMAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I+AE LRLA   L +ITG    + LL  IF+ FCIGK
Sbjct: 418 EILAEELRLAQQYLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|77461959|ref|YP_351466.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Pf0-1]
 gi|123602666|sp|Q3K429|MNME_PSEPF RecName: Full=tRNA modification GTPase mnmE
 gi|77385962|gb|ABA77475.1| putative tRNA modification GTPase [Pseudomonas fluorescens Pf0-1]
          Length = 456

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 163/461 (35%), Positives = 253/461 (54%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  +ETI AV+T      + I+R+SGP      + I  ++   PR A    FF  + ++
Sbjct: 1   MSAPRETIAAVATAQGRGGVGIVRISGPLASVAAKAISGREL-KPRFAHYGPFFSDNQQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGLALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLEL-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL+ +  ++N++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLSMLDKVRNELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRD+L   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            +LL+ +  + +             + P       I  K+DL     +    +  H+  S
Sbjct: 298 RVLLVVDATAPEAADPFALWPEFLETRPDPAKVTLIRNKADLTGEPIALEVSDDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGL+ L + +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSAKSAGEGLDLLRDHLKACM-GYEQTSESSFSARRRHLEALRHASDALEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  SLG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|330961500|gb|EGH61760.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 456

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 165/461 (35%), Positives = 247/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  + +  +  P PR A    F    G +
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKTAQAMIGR-TPKPRYAHYGPFSDDAGEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLTMLDDVRLELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R T+D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRNTEDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  KSDL       +T +  H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKSDLSGDHVGLFTSDDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASHSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  SLG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|227113121|ref|ZP_03826777.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 454

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 156/458 (34%), Positives = 245/458 (53%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M++  +TI A +T      + I+R+SG +   V   +   K P PR A    F   +G  
Sbjct: 1   MSNT-DTIVAQATPPGRGGVGILRISGQAAADVAHAVLG-KLPKPRHADYLPFRDANGTT 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +  +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLSTVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++   G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  + +               PK +    +  K+D+                 +
Sbjct: 298 RVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGIEEVNTHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L + +K  +            + +RHL  L    ++L             
Sbjct: 358 SARTGEGIDTLRDHLKQSM-GFTSNTEGGFLARRRHLQALELAAQHLIQGKEQLVSAYAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|153949187|ref|YP_001403100.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP
           31758]
 gi|166991119|sp|A7FPC2|MNME_YERP3 RecName: Full=tRNA modification GTPase mnmE
 gi|152960682|gb|ABS48143.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP
           31758]
          Length = 454

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 159/456 (34%), Positives = 244/456 (53%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      + I+R+SG +  +V   +   K P PR A    F  +DG  LD
Sbjct: 2   STTDTIVAQATPPGRGGVGILRVSGRAASEVAHAVLG-KLPKPRYADYLPFKDVDGSTLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + + G  + I DTAG+RE +D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHINGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADRV 299

Query: 303 LLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +                 P  +    +  K+D+       +         +S+
Sbjct: 300 LFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L + +K  +            + +RHL  L    R+L             ++
Sbjct: 360 RTGEGIDLLRDHLKQSM-GFTSNTEGGFLARRRHLQALETAARHLIQGHEQLVSAYAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|238787834|ref|ZP_04631631.1| tRNA modification GTPase mnmE [Yersinia frederiksenii ATCC 33641]
 gi|238724177|gb|EEQ15820.1| tRNA modification GTPase mnmE [Yersinia frederiksenii ATCC 33641]
          Length = 454

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 245/456 (53%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      + I+R+SG +   V + +   K P PR A    F  +DG ILD
Sbjct: 2   STTDTIVAQATPPGRGGVGILRVSGRAAATVAQAVLG-KLPKPRYADYLPFKDVDGSILD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQADRV 299

Query: 303 LLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +                 P ++    +  K+D+       +         +S+
Sbjct: 300 LFMVDGTTTDATEPSAIWPEFMARLPSSLPITVVRNKADITGETLGLTEVNGHSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +            + +RHL  L    ++L             ++
Sbjct: 360 RTGEGIDLLRNHLKQSM-GFTSNTEGGFLARRRHLQALETAAQHLVQGHEQLVSAHAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|28872710|ref|NP_795329.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213968446|ref|ZP_03396589.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato T1]
 gi|301384266|ref|ZP_07232684.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063883|ref|ZP_07255424.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato K40]
 gi|302131967|ref|ZP_07257957.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|32171793|sp|Q87TS2|MNME_PSESM RecName: Full=tRNA modification GTPase mnmE
 gi|28855966|gb|AAO59024.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213926734|gb|EEB60286.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato T1]
          Length = 456

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 164/461 (35%), Positives = 247/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  + I  +  P PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKTAQAITGRM-PKPRFAHYGPFADESGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGVFSQRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLGMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL     +  T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDSIALQTSADGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|170026449|ref|YP_001722954.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis YPIII]
 gi|205829188|sp|B1JRQ1|MNME_YERPY RecName: Full=tRNA modification GTPase mnmE
 gi|169752983|gb|ACA70501.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis YPIII]
          Length = 454

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 159/456 (34%), Positives = 245/456 (53%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      + I+R+SG +  +V   +   K P PR A    F  +DG  LD
Sbjct: 2   STTDTIVAQATPPGRGGVGILRVSGRAASEVAHAVLG-KLPKPRYADYLPFKDVDGSTLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE +D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADRV 299

Query: 303 LLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +                 P  +    +  K+D+       +         +S+
Sbjct: 300 LFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L + +K  +            + +RHL  L    R+L             ++
Sbjct: 360 RTGEGIDLLRDHLKQSM-GFTSNTEGGFLARRRHLQALETAARHLIQGHEQLVSAYAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|163803610|ref|ZP_02197476.1| tRNA modification GTPase TrmE [Vibrio sp. AND4]
 gi|159172604|gb|EDP57462.1| tRNA modification GTPase TrmE [Vibrio sp. AND4]
          Length = 453

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 159/455 (34%), Positives = 247/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   QV   +  KK   PR A    F   DG +LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKKL-KPRYAEYLPFQAGDGTVLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  + ++R A PGEFS RAF N K+
Sbjct: 61  GIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGINDVRAARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSGDLQAIIDNLNAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVL 299

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +  + K+I        P +I    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTDATNPKDIWPDFVDRLPNSIGMTVIRNKADQTGEEMGICHVNDPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G++ L   +K  +            + +RHL  L +  ++L++     E     +I+
Sbjct: 360 TGTGVDALRTHLKECM-GFSGNTEGGFMARRRHLDSLERAAQHLQIGQEQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|238793137|ref|ZP_04636765.1| tRNA modification GTPase mnmE [Yersinia intermedia ATCC 29909]
 gi|238727510|gb|EEQ19036.1| tRNA modification GTPase mnmE [Yersinia intermedia ATCC 29909]
          Length = 454

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 158/456 (34%), Positives = 243/456 (53%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      + I+R+SG +  +V + +   K P PR A    F   DG  LD
Sbjct: 2   STTDTIVAQATPPGRGGVGILRVSGRAAAEVAQAVLG-KLPKPRYADYLPFKDTDGSTLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVKIHQLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRV 299

Query: 303 LLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +                 P  +    +  K+D+       +         +S+
Sbjct: 300 LFMVDGTTTDATEPAAIWPEFMARLPSTLPITVVRNKADVTGESLGLTEVNGHSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L + +K  +            + +RHL  L    ++L             ++
Sbjct: 360 RTGEGIDLLRSHLKQSM-GFTSNTEGGFLARRRHLQALETAAQHLVQGHEQLVSAYAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|260774975|ref|ZP_05883875.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609065|gb|EEX35224.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 453

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 247/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             ETI A +T      + IIR+SGP   +V   +  K+   PR A    F   DG  LD+
Sbjct: 2   TTETIVAQATAPGRGGVGIIRVSGPLAAKVASEVTGKEL-RPRYAEYLSFTAQDGTQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ + ++P +R A PGEFS RAF N K+
Sbjct: 61  GIALYFPNPNSFTGEDVLELQGHGGPVVMDMLIKRILQIPGIRTARPGEFSERAFLNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G  S+     ++ L H+R ++EA +DF E E+
Sbjct: 121 DLAQAEAIADLIDASSEQAAKSALKSLQGAFSNRIQTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSADLQTIIDNLTAVRKEATQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+E AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWEEIEQADRVL 299

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    KEI        P NI    I  K D            +     +S+ 
Sbjct: 300 FMVDGTTTDATDPKEIWPDFVDRLPSNIGMTVIRNKVDQTDETLGICHVNDPTLIRLSAR 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G+E L   +K  +            + +RHL  L +   +L++     E     +I+
Sbjct: 360 TGQGVESLRTHLKECM-GFAGGHEGGFMARRRHLEALEKAAEHLDIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|15603031|ref|NP_246103.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12721514|gb|AAK03250.1| ThdF [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 465

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 163/454 (35%), Positives = 246/454 (54%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V   +   K P PR A    F   DG +LD+G
Sbjct: 15  KETIVAQATAPGRGGIGILRVSGPKAVEVAHTVLG-KCPKPRMADYLPFKDSDGNVLDQG 73

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  V++ +L+ + ++  LRLA PGEFS +AF N K+D
Sbjct: 74  IALYFKAPHSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLD 133

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++
Sbjct: 134 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPD-EEI 192

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 193 DFLADGKIEAHLNDIITQLDHVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 252

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD ILL
Sbjct: 253 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILL 312

Query: 305 LKE-----------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFT 347
           + +           + S+     P NI    +  K+DL        +         S+ T
Sbjct: 313 MLDSTEADNQDLEKVRSEFLTKLPSNIPVTIVRNKADLSGENEGIVEQNGYTVITLSAKT 372

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIA 406
            +G+  L   +K  +  +   +     + +RHL  L Q   +L+   +        +++A
Sbjct: 373 QQGIALLREHLKQSMGYQ-TNMEGGFLARRRHLEALEQAATHLQQGHVQLTQFYAGELLA 431

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR     L +ITG    + LL  IFS FCIGK
Sbjct: 432 EELRRVQNHLSEITGQFTSDDLLGNIFSSFCIGK 465


>gi|153835787|ref|ZP_01988454.1| tRNA modification GTPase TrmE [Vibrio harveyi HY01]
 gi|148867486|gb|EDL66856.1| tRNA modification GTPase TrmE [Vibrio harveyi HY01]
          Length = 453

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 158/455 (34%), Positives = 243/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   QV   +   K   PR A    F   DG +LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPKANQVALEVTG-KTLKPRYAEYLPFQAEDGTVLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+
Sbjct: 61  GVALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGVRAARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVL 299

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    K+I        P +I    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTDATDPKDIWPDFVDRLPNSIGMTVIRNKADQTGEEMGICHVNDPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G++ L   +K  +            + +RHL  L +  ++L++     E     +I+
Sbjct: 360 TGAGVDALRTHLKECM-GFSGNTEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|226947216|ref|YP_002802289.1| tRNA modification GTPase TrmE [Azotobacter vinelandii DJ]
 gi|226722143|gb|ACO81314.1| tRNA modification GTPase TrmE [Azotobacter vinelandii DJ]
          Length = 455

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 160/459 (34%), Positives = 247/459 (53%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  +ETI A++T      + I+R+SGP    +   IC +    PR A    F    G++
Sbjct: 1   MHSARETIAAIATAQGRGGVGIVRVSGPLAGTIATGICARPL-RPRHAHYGAFRDGTGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L    ++   R+A PGEFS +AF N
Sbjct: 60  LDEGIALFFPGPHSFTGEDVLELQGHGGPLVLDLLLRRCLEL-GARMARPGEFSEQAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + GE S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGEFSRRVNALGERLIELRLYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  L+ D+S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGRVLELLDGLRADLSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRD+L   + ++G  + I DTAG+R+T+D VE+ G++R    +  AD
Sbjct: 238 GRESAIVTDIAGTTRDLLREHIHIDGMPLHIVDTAGLRDTEDRVERIGVERALQAIREAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY-------TEEYDHL 342
            +LL+ + ++ +               P+      I  K DL                  
Sbjct: 298 RVLLVIDASAPEAADPFALWPEFLDLPPEPGKVTLIRNKIDLTGEPIVHEQGSDGHVVIG 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TGEGL+ L   +K+ +  + + +  S  +  RHL  L +    LE        CG 
Sbjct: 358 LSARTGEGLDLLRKHLKACMGFE-QTIESSFSARCRHLEALRRAANSLEHGHAQLIGCGA 416

Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LR A   LG+ITG    + LL  IFS FCIGK
Sbjct: 417 GELLAEDLRQAQQHLGEITGAFTSDDLLGRIFSSFCIGK 455


>gi|269962685|ref|ZP_06177030.1| tRNA modification GTPase [Vibrio harveyi 1DA3]
 gi|269832608|gb|EEZ86722.1| tRNA modification GTPase [Vibrio harveyi 1DA3]
          Length = 453

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 158/455 (34%), Positives = 243/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   QV   +   K   PR A    F   DG +LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPKANQVALEVTG-KTLKPRYAEYLPFQAEDGTVLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+
Sbjct: 61  GIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGVRAARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSGDLQTIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVL 299

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    K+I        P +I    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTDATDPKDIWPDFVDRLPNSIGMTVIRNKADQTGEDMGICHVNDPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G++ L   +K  +            + +RHL  L +  ++L++     E     +I+
Sbjct: 360 TGAGVDALRTHLKECM-GFSGNTEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|114332120|ref|YP_748342.1| tRNA modification GTPase TrmE [Nitrosomonas eutropha C91]
 gi|114309134|gb|ABI60377.1| tRNA modification GTPase trmE [Nitrosomonas eutropha C91]
          Length = 459

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 165/453 (36%), Positives = 244/453 (53%), Gaps = 18/453 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A++T      I I+R+SG +  Q+ + I   K P PR A L  F   + +++D
Sbjct: 10  KNNDTIAAIATPPGRGGIGIVRISGTNLEQLAQTILG-KLPDPRHAGLFNFLDQNNQVID 68

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FPSP S+TGED  E H HGG AV+N +L    ++   RLA PGEF+ RAF N K
Sbjct: 69  QGIVLYFPSPNSYTGEDVLELHGHGGPAVMNLLLTRCLQL-GARLAEPGEFTLRAFLNEK 127

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE +ADLI + T    R ++  + GE SS   Q +  L  +R  +EA LDF E E
Sbjct: 128 LDLAQAEGVADLIEASTANAARCAVRSLHGEFSSAIHQLVSALIDLRVLVEATLDFPE-E 186

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++    S   +  +  ++  +   +S  + G +++ G K+V+ G  N GKSSL N LA  
Sbjct: 187 EIDFLQSAHAVEQLASIQTKLEQVLSASRRGNLLQEGIKVVLTGQPNVGKSSLLNRLAGD 246

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           ++AIVT+IPGTTRD +   +++EG  + + DTAG+RET DIVE+ GI R +  +E ADL+
Sbjct: 247 EIAIVTEIPGTTRDTIRQSIEIEGIPLHLIDTAGLRETSDIVEQHGIARAYAAIEQADLV 306

Query: 303 LLLKEI-------NSKKEISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGE 349
           LLL +        +       PK +  + +  K DL          T      +S  +GE
Sbjct: 307 LLLVDGRYGVTKEDHSVLARLPKELPVLTVHNKIDLSGQLSRIEEDTSGTAIYLSVKSGE 366

Query: 350 GLEELIN-KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDIIAE 407
           G+E L    +K++          +  + +RHL  L      L+ A         L+I+AE
Sbjct: 367 GIELLRTVLLKTVGWQTNIAGEGAYMARQRHLQALLHAKELLKRAETWLHTADQLEILAE 426

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LRLA  +L  ITG    + LL  IFS FCIGK
Sbjct: 427 ELRLAQQALSSITGEFTSDDLLGEIFSNFCIGK 459


>gi|237801669|ref|ZP_04590130.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331024528|gb|EGI04584.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 456

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 165/461 (35%), Positives = 246/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +    I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLASKTAYAIAGRTL-KPRYAHYGPFSDGTGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLGMLDDVRLELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + + +             P       I  K+DL        T E  H+  S
Sbjct: 298 RILLVVDATAPEAMDPFALWPEFLEQRPDPSKVTLIRNKADLSGDSVGLQTSEDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGLE L   +KS +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKSCM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|312964013|ref|ZP_07778484.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens WH6]
 gi|311282048|gb|EFQ60658.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens WH6]
          Length = 456

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/461 (35%), Positives = 249/461 (54%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  +ETI AV+T      + I+R+SGP      + I  ++   PR A    F   D  +
Sbjct: 1   MSAPRETIAAVATAQGRGGVGIVRISGPLAGHAAKAISGREL-KPRYAHYGPFLDADESV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGLTLYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQL-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  +++++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLTMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRD+L   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            +LL+ +  + + +             P       I  K+DL     +  T    H+  S
Sbjct: 298 RVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKADLTGEAIALATSADGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    G+GLE L + +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSAKSAGDGLELLRDHLKACM-GYEQTSESSFSARRRHLEALRHASAALEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A   LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|299820854|ref|ZP_07052743.1| tRNA modification GTPase TrmE [Listeria grayi DSM 20601]
 gi|299817875|gb|EFI85110.1| tRNA modification GTPase TrmE [Listeria grayi DSM 20601]
          Length = 457

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 153/457 (33%), Positives = 244/457 (53%), Gaps = 21/457 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   KK   +  S    +G    +G  
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPLAIQIADRIFYAKKRLEKVDSHTIHYGHIKENGET 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +    RLA PGEF++RAF N
Sbjct: 62  IEEVMVSVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLE-KGARLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  + G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVALRQLDGNLSKLIRSLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     +KN +   +   K G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTQLVKNSVEQLLLTAKQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEE---------YDHLISS 345
            ILL+   N    I         K   F+ +  K+DL S    +              S 
Sbjct: 301 FILLVLNQNEALTIEDEALFEAAKGHTFVVVLNKTDLPSKIDRKQLEKLANGNAIVETSL 360

Query: 346 FTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
              EG+ +L   I S+           +  S+ RH+  L Q +  L+           +D
Sbjct: 361 LKDEGMRDLEEAINSLFFEGEIDAGDATYISNVRHIALLHQAIEALDAVVEGVSVGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 421 IVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|156972770|ref|YP_001443677.1| tRNA modification GTPase TrmE [Vibrio harveyi ATCC BAA-1116]
 gi|166234831|sp|A7N0X8|MNME_VIBHB RecName: Full=tRNA modification GTPase mnmE
 gi|156524364|gb|ABU69450.1| hypothetical protein VIBHAR_00435 [Vibrio harveyi ATCC BAA-1116]
          Length = 453

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 158/455 (34%), Positives = 243/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   QV   +   K   PR A    F   DG +LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPKANQVALEVTG-KTLKPRYAEYLPFQAEDGTVLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+
Sbjct: 61  GIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGVRAARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G+ S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVL 299

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    K+I        P +I    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTDATDPKDIWPDFVDRLPNSIGMTVIRNKADQTGEEMGICHVNDPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G++ L   +K  +            + +RHL  L +  ++L++     E     +I+
Sbjct: 360 TGAGVDALRTHLKECM-GFSGNTEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|257866268|ref|ZP_05645921.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC30]
 gi|257873216|ref|ZP_05652869.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC10]
 gi|257800226|gb|EEV29254.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC30]
 gi|257807380|gb|EEV36202.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC10]
          Length = 481

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 152/463 (32%), Positives = 246/463 (53%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG     + + I +   K   +  S    +G    
Sbjct: 20  ITQEFDTIAAISTPPGEGAISIVRLSGEEAIAIADRIFQAGTKTLAQVPSHTIHYGHIID 79

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             + R++D+ +L V   P +FT ED  E + HGGI VVN +L+ L      RLA PGEF+
Sbjct: 80  PEENRLMDEVMLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFT 138

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS L      ++    + +E 
Sbjct: 139 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEV 198

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  ++  +L     +K  I + ++  + G+I+R G    I+G  N GKSS
Sbjct: 199 NIDYPEYDDVEELTTCLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSS 258

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVEK G++R+  
Sbjct: 259 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVEKIGVERSRK 318

Query: 295 EVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY---------TEEY 339
            +  A+LILL+   +       K+ +        I +  K+DL              +E 
Sbjct: 319 ALAEAELILLVLNQSEGLTQEDKQLLELTAGSRRIILLNKTDLEPKLATAELAQYAADEP 378

Query: 340 DHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397
              +S  T EGL++L   I  +    K      S  S+ RH+  L   V+ L E+    E
Sbjct: 379 IFSVSVLTSEGLDQLEQAIADLFFGGKTTDKDASYLSNTRHIALLENAVQSLSEVIQGIE 438

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 439 AGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 481


>gi|269965284|ref|ZP_06179405.1| tRNA modification GTPase [Vibrio alginolyticus 40B]
 gi|269830085|gb|EEZ84313.1| tRNA modification GTPase [Vibrio alginolyticus 40B]
          Length = 453

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 160/455 (35%), Positives = 242/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   QV   +   K   PR A    F   DG +LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPKANQVALEVTG-KTLKPRYAEYLPFKSEDGTVLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+
Sbjct: 61  GIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGIRAARPGEFSERAFLNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G  S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVL 299

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    K+I        P NI    I  K+D                  +S+ 
Sbjct: 300 FMVDGTTTDATDPKDIWPDFVDRLPDNIGITVIRNKADQTGEDMGICHVNNPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+E L + +K  +            + +RHL  L +  ++L++     E     +I+
Sbjct: 360 TGAGVEALRDHLKECM-GFSGNSEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|169634938|ref|YP_001708674.1| tRNA modification GTPase TrmE [Acinetobacter baumannii SDF]
 gi|169153730|emb|CAP02931.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Acinetobacter baumannii]
          Length = 454

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 170/459 (37%), Positives = 262/459 (57%), Gaps = 24/459 (5%)

Query: 1   MN--HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           MN  H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG
Sbjct: 1   MNNMHSQTTIAAIATPPGRGGVGVIRLSGPKAYNIAQKLTQKNLPEARMAGFRKFYDTDG 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAF
Sbjct: 61  SIMDEGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GANAAKAGEFSMRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           ENGK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF
Sbjct: 120 ENGKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDF 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E E++   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NA
Sbjct: 180 PE-EEIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA  + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VEKEGI+R   E+E 
Sbjct: 239 LAGVERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQ 298

Query: 299 ADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ADL+LL+ ++N   +             +    + IG K DL     E  D+       +
Sbjct: 299 ADLLLLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITV 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401
           S+    G++ L++ I +     F     +  +  RHL  +++T  YL  A   L   + G
Sbjct: 359 SAKQEMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMTRTQLYLAEAREQLVVFNAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 -ELVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|56461736|ref|YP_157017.1| tRNA modification GTPase TrmE [Idiomarina loihiensis L2TR]
 gi|81821749|sp|Q5QZJ5|MNME_IDILO RecName: Full=tRNA modification GTPase mnmE
 gi|56180746|gb|AAV83468.1| ThdF [Idiomarina loihiensis L2TR]
          Length = 458

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/454 (35%), Positives = 248/454 (54%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A +T      + I+R+SG +C +V E +     P PRKA    F+ L  ++LD+G
Sbjct: 8   DDTIVAQATPPGRGGVGIVRVSGKACKEVAEKLLG-HCPKPRKAEYLPFYDLQEQLLDEG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP P SFTGED  E   HGG  +++ I+  + ++P +R A PGEFS RAF N K+D
Sbjct: 67  IALFFPGPNSFTGEDVLELQGHGGPVIIDMIIRAILEIPGIRPARPGEFSERAFLNDKLD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   + +++ + GE S    Q +D + H+R ++EA +DF + E++
Sbjct: 127 LTQAEAIADLIDTNSEQAAKAALQSLKGEFSHKIDQLVDAVIHLRIYVEAAIDFPD-EEI 185

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              S  +V  D+  + + +     + K G ++R G +IVI G  NAGKSSL NALA ++ 
Sbjct: 186 DFLSDGKVSGDLAEIIDQLFHIEQEAKQGTLMREGMRIVIAGRPNAGKSSLLNALAGRES 245

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++   + I DTAG+RE+ D VEK GI+R + E+  AD +L 
Sbjct: 246 AIVTEIAGTTRDVLREHIQIDSMPLHIIDTAGLRESPDHVEKIGIERAWDEIRQADRVLF 305

Query: 305 LKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + +      I             P+++ +  I  K DL    T   +H       +S+ T
Sbjct: 306 MVDSQETSAIHPDDIWPEFFAQLPEDMPYTVIRNKVDLSEEPTGIDEHNNIPVIHLSAKT 365

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           G G+E L   +K  +         S  + +RHL  L++   +L       E +   +I+A
Sbjct: 366 GHGIELLREHLKHCVGYSATS-EGSFMARRRHLEALAKAKVHLLQGLEQLEANMAGEILA 424

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRL    L +ITG    + LL  IF  FCIGK
Sbjct: 425 EELRLTQQHLNEITGEFTSDDLLGQIFGSFCIGK 458


>gi|239833103|ref|ZP_04681432.1| tRNA modification GTPase TrmE [Ochrobactrum intermedium LMG 3301]
 gi|239825370|gb|EEQ96938.1| tRNA modification GTPase TrmE [Ochrobactrum intermedium LMG 3301]
          Length = 442

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 200/437 (45%), Positives = 291/437 (66%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TIFA+S+G LPS ++++R+SGP    V E I     P PR A+ + F   +G  +D G
Sbjct: 8   QDTIFALSSGRLPSGVAVVRISGPRVRFVLETILG-VLPTPRHAAYKLFRARNGDPIDHG 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGED AEFH HGG AVV  +L EL ++   R+A  GEF+RRAF NGK+D
Sbjct: 67  LVLFFPEPNSFTGEDCAEFHAHGGKAVVERLLAELGEIAGCRIAEAGEFTRRAFSNGKMD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE LADLI++ETE QRRL+++  SG    LY +W  +L   R+FIEA+LDF++E DV
Sbjct: 127 LTIAEGLADLIAAETEGQRRLALQVASGTQRELYTEWRQRLLRARAFIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S++V   +  L+ +I SHI+ GK   ++R+G  +VI+G  NAGKSSL N LA ++V
Sbjct: 187 PGSVSEQVWQSLALLRTEIESHIASGKRASMLRDGLHVVIVGAPNAGKSSLLNFLAGREV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++  GTTRD+L + LDL G  V ++DTAG+RET+ +VEK GI+R    + +ADL+LL
Sbjct: 247 AIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETESVVEKIGIERARARMADADLVLL 306

Query: 305 LKEINSKKEISFPKNI-DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L+++N    I           +GTK+DL       + + IS+ TGEGL+ L+  +++   
Sbjct: 307 LEDMNDPVAIGTDDTPATLWTVGTKADLSEKTDGGWSYRISTRTGEGLDGLLADLQNFAE 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            +  ++  ++P+ +RH+  L  TV  ++ A LN  +  L++ AEN+RLAS  LG+ITG V
Sbjct: 367 AQIGQIEDAVPTRQRHISLLRSTVVEIDKA-LNGTNVPLELRAENMRLASQYLGRITGDV 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE++LD+IFS+FCIGK
Sbjct: 426 DVEEILDVIFSQFCIGK 442


>gi|116874162|ref|YP_850943.1| tRNA modification GTPase TrmE [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123458786|sp|A0AMD2|MNME_LISW6 RecName: Full=tRNA modification GTPase mnmE
 gi|116743040|emb|CAK22164.1| tRNA modification GTPase TrmE [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 457

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 149/457 (32%), Positives = 243/457 (53%), Gaps = 21/457 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   KK      S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKKNLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHLISS 345
            ILL+        +  +         +++ +  K+DL +            E      S 
Sbjct: 301 FILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINKVRELAGENPIVSTSL 360

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLD 403
              EGLE L   IK++           +  S+ RH+  L Q +  L   +   +    +D
Sbjct: 361 VNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNAVTTGIQLGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 421 IVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|262392791|ref|YP_003284645.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. Ex25]
 gi|262336385|gb|ACY50180.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. Ex25]
          Length = 453

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 160/455 (35%), Positives = 241/455 (52%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   QV   +   K   PR A    F   DG +LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPKANQVALEVTG-KTLKPRYAEYLPFKSEDGTVLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+
Sbjct: 61  GIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGIRAARPGEFSERAFLNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G  S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVL 299

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    K+I        P NI    I  K+D                  +S+ 
Sbjct: 300 FMVDGTTTDATDPKDIWPDFVDRLPDNIGITVIRNKADQTGEEMGICHVNNPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+E L   +K  +            + +RHL  L +  ++L++     E     +I+
Sbjct: 360 TGAGVEALREHLKECM-GFSGNSEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|300719145|ref|YP_003743948.1| tRNA modification GTPase [Erwinia billingiae Eb661]
 gi|299064981|emb|CAX62101.1| tRNA modification GTPase [Erwinia billingiae Eb661]
          Length = 454

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 161/458 (35%), Positives = 246/458 (53%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  ETI A +T      + I+R+SG    +V + +   K P PR A    F   DG+ 
Sbjct: 1   MSH-SETIVAQATPPGRGGVGILRISGSKAAEVAQALLG-KLPKPRYADYLPFRDTDGKA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  MP LR+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVAMPGLRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S      ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSLRVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLEQVIADLDGVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQAD 297

Query: 301 LILLLKE-----INSKKEI------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +          EI        P  +    +  K+D+       +         +
Sbjct: 298 RVLFMVDGTTTGATEPAEIWPDFIARLPATLPITVVRNKADVTGEAQGLTEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TG+G++ L N +K  +      +     + +RHL  L     +L             
Sbjct: 358 SARTGDGIDVLRNHLKESM-GFSGNMEGGFLARRRHLQALELAATHLLQGREQLLGARAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRVAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|308051500|ref|YP_003915066.1| tRNA modification GTPase trmE [Ferrimonas balearica DSM 9799]
 gi|307633690|gb|ADN77992.1| tRNA modification GTPase trmE [Ferrimonas balearica DSM 9799]
          Length = 455

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 164/458 (35%), Positives = 246/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   ++TI A +T      + I+R+SGP    V   +   K P  R A    F    G++
Sbjct: 1   MTDHQDTIVAQATAPGQGGVGIVRVSGPLAETVAIHVLG-KVPKTRYAEYLPFKDDSGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ ++F  P SFTGED  E   HGG  V++ ++  +  +P LR A PGEFS RAF N
Sbjct: 60  LDQGIALMFKGPNSFTGEDVLELQGHGGPVVLDMLIRRILTIPGLRTARPGEFSERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R +M+ + GE S    Q +++LTH+R ++EA +DF +
Sbjct: 120 DKLDLAQAEAIADLIEASSEQAVRSAMQSLQGEFSGQIHQLVEQLTHLRIYVEAAIDFPD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+V   S   +  D+  ++  ++      + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 180 -EEVDFLSDGRIAGDLAAIETRLAEVRRSARQGALMREGMKVVIAGRPNAGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD
Sbjct: 239 GRESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWSEIAQAD 298

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLI 343
            +LL+ +                    P+ +    I  K+DL     +           +
Sbjct: 299 RVLLMVDGTETDATDPAAIWPELIDRLPQEMGLTLIRNKADLTGEAVDHGQAGGHPMFRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           S+ TGEG+E L   +K+ +  +         + +RHL  L Q   +LE      E     
Sbjct: 359 SAKTGEGVEALKQHLKACMGYQ-GTTEGGFMARQRHLEALQQAALHLEQGKEQLEVFMAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 418 ELLAEELRLAQQALAEITGEFSSDDLLGRIFSSFCIGK 455


>gi|52843194|ref|YP_096993.1| tRNA modification GTPase TrmE [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81823314|sp|Q5ZR82|MNME_LEGPH RecName: Full=tRNA modification GTPase mnmE
 gi|52630305|gb|AAU29046.1| GTP binding protein in thiophene and furan oxidation (GTPase)
           [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 446

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 159/447 (35%), Positives = 255/447 (57%), Gaps = 16/447 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + I+R+SGP+ + +   +   K   PR A+    +  +  +LD+GL
Sbjct: 4   DTIVAIATPPGRGGVGIVRISGPNAYAIALCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED  E   HG   V++ +++E +     RLA PGEFS RAF N KIDL
Sbjct: 64  VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKE-SIAAGARLARPGEFSERAFLNDKIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ADLI + ++   R++++ + G+ S    Q  ++L ++R ++EA +DF E E++ 
Sbjct: 123 IQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPE-EEID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +   V   +  +   +    SQ   G ++R G  +VI G  NAGKS+L N LA +DVA
Sbjct: 182 FLNDGNVSQLLQKIIGRLEDIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGRDVA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRD++   + L+   + I DTAG+R++DD+VEKEGIKR + E++ AD +LL+
Sbjct: 242 IVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVLLV 301

Query: 306 KEINSKKE---------ISFPKNIDFIFIGTKSD--LYSTYTEEYDHLISSFTGEGLEEL 354
            +IN+  +         ++ P  I  I +  K D    +   +E+   +S+ TGEGL+EL
Sbjct: 302 VDINNPDQQNSLLNELRLTLPNKIPIITVYNKIDTTKLTAKCDEHTVYLSAKTGEGLDEL 361

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLAS 413
              IK ++   ++       + +RHL  L +    L        +    +++AE+LRLA 
Sbjct: 362 KKVIKQVV--GYQPTEGQFLARRRHLQALDEAKALLLTGQSQLTNHKAGELLAEDLRLAH 419

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L +ITG    + LL  IFS FCIGK
Sbjct: 420 QTLCEITGEFTSDDLLGKIFSSFCIGK 446


>gi|148361342|ref|YP_001252549.1| thiophene/furan oxidation GTPase [Legionella pneumophila str.
           Corby]
 gi|296108683|ref|YP_003620384.1| GTP binding protein in thiophene and furan oxidation (GTPase)
           [Legionella pneumophila 2300/99 Alcoy]
 gi|205415773|sp|A5IIK3|MNME_LEGPC RecName: Full=tRNA modification GTPase mnmE
 gi|148283115|gb|ABQ57203.1| GTP binding protein in thiophene and furan oxidation (GTPase)
           [Legionella pneumophila str. Corby]
 gi|295650585|gb|ADG26432.1| GTP binding protein in thiophene and furan oxidation (GTPase)
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 446

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 159/447 (35%), Positives = 255/447 (57%), Gaps = 16/447 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + I+R+SGP+ + +   +   K   PR A+    +  +  +LD+GL
Sbjct: 4   DTIVAIATPPGRGGVGIVRISGPNAYAIALCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED  E   HG   V++ +++E +     RLA PGEFS RAF N KIDL
Sbjct: 64  VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKE-SIAAGARLARPGEFSERAFLNDKIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ADLI + ++   R++++ + G+ S    Q  ++L ++R ++EA +DF E E++ 
Sbjct: 123 IQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPE-EEID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +   V   +  +   +    SQ   G ++R G  +VI G  NAGKS+L N LA +DVA
Sbjct: 182 FLNDGNVSQLLQRIIGRLEEIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGRDVA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRD++   + L+   + I DTAG+R++DD+VEKEGIKR + E++ AD +LL+
Sbjct: 242 IVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVLLV 301

Query: 306 KEINSKKE---------ISFPKNIDFIFIGTKSD--LYSTYTEEYDHLISSFTGEGLEEL 354
            +IN+  +         ++ P  I  I +  K D    +   +E+   +S+ TGEGL+EL
Sbjct: 302 VDINNPDQQNSLLNELRLTLPNKIPIITVYNKIDTTKLTAKCDEHTVYLSAKTGEGLDEL 361

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLAS 413
              IK ++   ++       + +RHL  L +    L        +    +++AE+LRLA 
Sbjct: 362 KKVIKQVV--GYQPTEGQFLARRRHLQALDEAKALLLTGQSQLTNHKAGELLAEDLRLAH 419

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L +ITG    + LL  IFS FCIGK
Sbjct: 420 QTLCEITGEFTSDDLLGKIFSSFCIGK 446


>gi|138897067|ref|YP_001127520.1| tRNA modification GTPase TrmE [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249888|ref|ZP_03148584.1| tRNA modification GTPase TrmE [Geobacillus sp. G11MC16]
 gi|166200479|sp|A4ITX1|MNME_GEOTN RecName: Full=tRNA modification GTPase mnmE
 gi|134268580|gb|ABO68775.1| Thiophen and furan oxidation [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210764|gb|EDY05527.1| tRNA modification GTPase TrmE [Geobacillus sp. G11MC16]
          Length = 462

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 155/462 (33%), Positives = 250/462 (54%), Gaps = 25/462 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL---- 56
            E +TI A+ST     AI+I+RLSG    ++ + + +    K      S    +G     
Sbjct: 2   TEFDTIAAISTPMGEGAIAIVRLSGDEAVEIADRLFRSPTGKQLKDVPSHTIHYGHIVDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             GRI+++ ++ V  +P++FT ED  E + HGG   VN +L+ L      RLA PGEF++
Sbjct: 62  KSGRIVEEVMVSVMRAPKTFTREDVVEINCHGGFVSVNRVLQ-LVLANGARLAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    ++++ M G LS L  +    +    + +E +
Sbjct: 121 RAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETLAHVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  + + +     +++  I   +S    G+I+R G   VI+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTPRLLKEKAEYVRGQIEKLLSTATQGKILREGLATVIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   
Sbjct: 241 LNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGVERSRQM 300

Query: 296 VENADLILLLK----EINSKKEISFP--KNIDFIFIGTKSDLYSTYTEE---------YD 340
           ++ ADLILL+      +  + E  F   + +D I I  K+DL      E           
Sbjct: 301 LKKADLILLVLNYHEPLTEEDERLFAMTEGMDVIVIVNKTDLPQNIDIERVKELAAGRPI 360

Query: 341 HLISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398
              S     G++EL   I  +      +    +  S+ RH+  L Q  + +E A S  + 
Sbjct: 361 VATSLLCERGIDELEKAIADLFFGGELEAGDLTYVSNSRHIALLEQAKKAIEDALSGIDV 420

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +LR A   LG+I G    E L+D +F++FC+GK
Sbjct: 421 GMPVDLVQIDLRRAWELLGEIVGDTVHESLIDQLFAQFCLGK 462


>gi|257888103|ref|ZP_05667756.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,141,733]
 gi|257896278|ref|ZP_05675931.1| tRNA modification GTPase mnmE [Enterococcus faecium Com12]
 gi|293379359|ref|ZP_06625503.1| tRNA modification GTPase TrmE [Enterococcus faecium PC4.1]
 gi|257824157|gb|EEV51089.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,141,733]
 gi|257832843|gb|EEV59264.1| tRNA modification GTPase mnmE [Enterococcus faecium Com12]
 gi|292641882|gb|EFF60048.1| tRNA modification GTPase TrmE [Enterococcus faecium PC4.1]
          Length = 465

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 145/463 (31%), Positives = 249/463 (53%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG    Q+ + +     K      S    +G    
Sbjct: 4   ITLEFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYHSGNKRLSEVPSHTIHYGHIVD 63

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               +++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF+
Sbjct: 64  PKSDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E 
Sbjct: 123 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEV 182

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSS
Sbjct: 183 NIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSS 242

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+  
Sbjct: 243 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRK 302

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE---------EY 339
            +  ADLILL+           ++ +   K +  I +  K+DL +   +         E 
Sbjct: 303 ALAEADLILLVLNQSEPLTAEDEQLLEATKGLKRIILLNKTDLPAQLEQEKLNKLIENEP 362

Query: 340 DHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NE 397
              IS    +GL+ L + I  +    +  +   +  S+ RH+  L +    LE      +
Sbjct: 363 VFSISVAKNDGLDHLESAISDLFFSGETGERDATYVSNTRHIALLEKASLSLEEVIAGID 422

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465


>gi|205829220|sp|Q31DJ0|MNME_THICR RecName: Full=tRNA modification GTPase mnmE
          Length = 451

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 153/452 (33%), Positives = 251/452 (55%), Gaps = 18/452 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A++T      + I+R+SG    ++ E +   K P PR A    F G +G++LD
Sbjct: 4   STNDTIAAIATAPGRGGVGIVRVSGIKAAEIAEHVLG-KCPKPRYAHYGPFLGAEGQVLD 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP+P SFTGE+  E   HGG  ++  +LE + ++   RLA PGEFS++AF N K
Sbjct: 63  QGIALFFPNPHSFTGENVLELQGHGGPVILQWLLERVVQL-GARLAEPGEFSKQAFLNDK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + ++   R ++  + G+ S+   + +++L  +R ++EA +DF E E
Sbjct: 122 LDLAQAEAIADLIDASSQQAARSALRSLQGDFSNQVNELVEQLIQLRIYVEAAIDFPE-E 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  +V   +  +   +   ++  + G ++R G  +VILG  NAGKSSL NAL+ +
Sbjct: 181 EIDFLSDGKVAGQLQHILEQLHRVLASAQQGVLLREGMSVVILGRPNAGKSSLLNALSGR 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRD++  ++ ++G  + + DTAG+RE  D VE+ GI+R +  +E AD I
Sbjct: 241 ESAIVTDIAGTTRDIVKEEIQIDGMPLHVLDTAGLREATDAVEQIGIQRAWAAIEEADRI 300

Query: 303 LLLKEIN-----SKKEI--SFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGE 349
           L++ + N       + I    P +I    I  K DL     E      E +  +S+    
Sbjct: 301 LVMVQANEAIHPEDQAILEKMPSHIPVTLIHNKIDLIEKSPELSENDGETEIWLSAKHHL 360

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAEN 408
           GL+ L   +K+ +    +       + KRHL  L   + ++E      E     +++AE+
Sbjct: 361 GLDLLKQHLKTEM-GYAQTEEGVFMARKRHLEALETALHFVETGQQQLEHFAAGELLAED 419

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LR A  +L +ITG    + LL  IF+ FCIGK
Sbjct: 420 LRQAQQALSEITGQFTSDDLLGRIFTSFCIGK 451


>gi|84394513|ref|ZP_00993223.1| tRNA modification GTPase [Vibrio splendidus 12B01]
 gi|84374866|gb|EAP91803.1| tRNA modification GTPase [Vibrio splendidus 12B01]
          Length = 453

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 161/455 (35%), Positives = 244/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   QV   +   K   PR A    F   DG  LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPLATQVALEVTG-KTLKPRYAEYLPFKSDDGIELDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+
Sbjct: 61  GIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILAISGVRAARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S      +D L ++R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEEAAKSALQSLQGEFSKRINTLVDSLIYLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSTDLQAIIDNLEAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWEEIAQADRVL 299

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    K+I        P NI    I  K+D  S         +     +S+ 
Sbjct: 300 FMVDGTTTDATDPKDIWPDFVDRLPDNIGMTVIRNKADQTSEELGICHVNDPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G++ L + +K  +            + +RHL  L +   +L++     E     +I+
Sbjct: 360 TGQGVDALRSHLKDCM-GFAGGHEGGFMARRRHLDALERASEHLDIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453


>gi|205422392|sp|Q0AE55|MNME_NITEC RecName: Full=tRNA modification GTPase mnmE
          Length = 451

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 165/453 (36%), Positives = 244/453 (53%), Gaps = 18/453 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A++T      I I+R+SG +  Q+ + I   K P PR A L  F   + +++D
Sbjct: 2   KNNDTIAAIATPPGRGGIGIVRISGTNLEQLAQTILG-KLPDPRHAGLFNFLDQNNQVID 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FPSP S+TGED  E H HGG AV+N +L    ++   RLA PGEF+ RAF N K
Sbjct: 61  QGIVLYFPSPNSYTGEDVLELHGHGGPAVMNLLLTRCLQL-GARLAEPGEFTLRAFLNEK 119

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE +ADLI + T    R ++  + GE SS   Q +  L  +R  +EA LDF E E
Sbjct: 120 LDLAQAEGVADLIEASTANAARCAVRSLHGEFSSAIHQLVSALIDLRVLVEATLDFPE-E 178

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++    S   +  +  ++  +   +S  + G +++ G K+V+ G  N GKSSL N LA  
Sbjct: 179 EIDFLQSAHAVEQLASIQTKLEQVLSASRRGNLLQEGIKVVLTGQPNVGKSSLLNRLAGD 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           ++AIVT+IPGTTRD +   +++EG  + + DTAG+RET DIVE+ GI R +  +E ADL+
Sbjct: 239 EIAIVTEIPGTTRDTIRQSIEIEGIPLHLIDTAGLRETSDIVEQHGIARAYAAIEQADLV 298

Query: 303 LLLKEI-------NSKKEISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGE 349
           LLL +        +       PK +  + +  K DL          T      +S  +GE
Sbjct: 299 LLLVDGRYGVTKEDHSVLARLPKELPVLTVHNKIDLSGQLSRIEEDTSGTAIYLSVKSGE 358

Query: 350 GLEELIN-KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDIIAE 407
           G+E L    +K++          +  + +RHL  L      L+ A         L+I+AE
Sbjct: 359 GIELLRTVLLKTVGWQTNIAGEGAYMARQRHLQALLHAKELLKRAETWLHTADQLEILAE 418

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LRLA  +L  ITG    + LL  IFS FCIGK
Sbjct: 419 ELRLAQQALSSITGEFTSDDLLGEIFSNFCIGK 451


>gi|170724368|ref|YP_001752056.1| tRNA modification GTPase TrmE [Pseudomonas putida W619]
 gi|205415795|sp|B1JFV3|MNME_PSEPW RecName: Full=tRNA modification GTPase mnmE
 gi|169762371|gb|ACA75687.1| tRNA modification GTPase TrmE [Pseudomonas putida W619]
          Length = 456

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 160/461 (34%), Positives = 245/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+RLSGP   +  + I  +    PR A    F   +G +
Sbjct: 1   MNTVRETIAAIATAQGRGGVGIVRLSGPLAAKAGQLITGRTL-TPRHAHYGPFRDQEGLV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQV-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + GE S       + L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSKRVHSLTEALIALRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL+ +  ++ ++S+   +   G ++R+G  +VI G  NAGKSSL N LA
Sbjct: 179 -EEIDFLADGHVLSMLDSVRAELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSLLNQLA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT I GTTRD+L   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTAIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFT 347
            +LL+ +  + +               P       I  K+DL       E+ D    + T
Sbjct: 298 RVLLVVDSTAPEASDPFALWPEFLDQRPDPGKVTLIRNKADLSGEPVGLEQCDDGHVTIT 357

Query: 348 ------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
                  +GL  L + +K+ +    +       + +RHL  L Q   +LE   A L    
Sbjct: 358 LSAKGDDQGLLLLRDHLKACM-GYEQTAESGFSARRRHLDALRQACAHLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|117918464|ref|YP_867656.1| tRNA modification GTPase TrmE [Shewanella sp. ANA-3]
 gi|166991117|sp|A0KR31|MNME_SHESA RecName: Full=tRNA modification GTPase mnmE
 gi|117610796|gb|ABK46250.1| tRNA modification GTPase TrmE [Shewanella sp. ANA-3]
          Length = 453

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 165/455 (36%), Positives = 256/455 (56%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P PR A    F    G+++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRISGDKATDVAMAVLG-HLPKPRYADYCDFKNASGQVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+
Sbjct: 61  GIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S    + +D++TH+R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++ N +  + + +S+  +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIANALYKIIDKLSAVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSF 346
            + +  +   +             P N+    +  K+DL       TEE     + IS+ 
Sbjct: 300 FMVDGTTTDAVDPHDIWPDFINRLPANLGVTVVRNKADLTGENLAMTEEKGYSVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+EEL   +KS++  K   L     + +RHL  L     +L++     E     +++
Sbjct: 360 TGLGVEELKQHLKSLMGYK-SNLEGGFIARRRHLEALDVAASHLQLGKEQLEIYLAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|70733512|ref|YP_263287.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Pf-5]
 gi|123651832|sp|Q4K396|MNME_PSEF5 RecName: Full=tRNA modification GTPase mnmE
 gi|68347811|gb|AAY95417.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Pf-5]
          Length = 456

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 161/461 (34%), Positives = 250/461 (54%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP      + I  ++   PR A    F      +
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRISGPLAGAAAKAISGREL-KPRFAHYGPFLSEQEEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+++ FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIVLYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLEL-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVYNLTEQLIALRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL+ +  +++++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLSMLDAVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRD+L   + ++G  + + DTAG+R+T+D VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTEDQVEKIGVERALKAISEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            +LL+ +  + +               P       I  K+DL     +  T +  H+  S
Sbjct: 298 RVLLVVDATAAEAADPFALWPEFLEQRPDPAKVTLIRNKADLTGEPIALETCDDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    G GLE L + +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSAMAAGSGLELLRDHLKACM-GYEQTSESSFSARRRHLEALHYASAALEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  SLG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|24371603|ref|NP_715645.1| tRNA modification GTPase TrmE [Shewanella oneidensis MR-1]
 gi|24345353|gb|AAN53090.1|AE015452_3 tRNA modification GTPase TrmE [Shewanella oneidensis MR-1]
          Length = 457

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 257/458 (56%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           ++   +TI A +T      + IIR+SG     V   +     P PR A   YF    G++
Sbjct: 3   ISVTTDTIVAQATAPGRGGVGIIRISGDKATNVAMAVLG-HLPKPRYADYCYFKSASGQV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N
Sbjct: 62  IDQGIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + +++ + GE S    + +D++TH+R ++EA +DF +
Sbjct: 122 DKLDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPD 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+V   S  ++ N +  + + + +  +  K G IIR G K+VI G  NAGKSSL NALA
Sbjct: 182 -EEVDFLSDGKIANALYKIIDKLIAVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            K+ AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD
Sbjct: 241 GKESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSAD 300

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLI 343
            +L + +  +   +             P N+    I  K+DL     E  +      + I
Sbjct: 301 RVLFMVDGTTTTAVDPHDIWPDFINRLPTNLGVTVIRNKADLTGENLEMTEEKGYSVYRI 360

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           S+ TG G++EL   +KS++  +   L     + +RHL  L     +L++     E     
Sbjct: 361 SAKTGLGVDELKQHLKSLMGYQ-SNLEGGFIARRRHLEALEIAASHLQLGKEQLEVYLAG 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 420 ELLAEELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 457


>gi|14195273|sp|Q9CLQ1|MNME_PASMU RecName: Full=tRNA modification GTPase mnmE
          Length = 452

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 163/454 (35%), Positives = 246/454 (54%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V   +   K P PR A    F   DG +LD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPKAVEVAHTVLG-KCPKPRMADYLPFKDSDGNVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  V++ +L+ + ++  LRLA PGEFS +AF N K+D
Sbjct: 61  IALYFKAPHSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEAHLNDIITQLDHVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD ILL
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILL 299

Query: 305 LKE-----------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFT 347
           + +           + S+     P NI    +  K+DL        +         S+ T
Sbjct: 300 MLDSTEADNQDLEKVRSEFLTKLPSNIPVTIVRNKADLSGENEGIVEQNGYTVITLSAKT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIA 406
            +G+  L   +K  +  +   +     + +RHL  L Q   +L+   +        +++A
Sbjct: 360 QQGIALLREHLKQSMGYQ-TNMEGGFLARRRHLEALEQAATHLQQGHVQLTQFYAGELLA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR     L +ITG    + LL  IFS FCIGK
Sbjct: 419 EELRRVQNHLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|54295838|ref|YP_128253.1| tRNA modification GTPase TrmE [Legionella pneumophila str. Lens]
 gi|81822283|sp|Q5WSF0|MNME_LEGPL RecName: Full=tRNA modification GTPase mnmE
 gi|53755670|emb|CAH17173.1| hypothetical protein lpl2929 [Legionella pneumophila str. Lens]
          Length = 446

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 159/447 (35%), Positives = 255/447 (57%), Gaps = 16/447 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + I+R+SGP+ + +   +   K   PR A+    +  +  +LD+GL
Sbjct: 4   DTIVAIATPPGRGGVGIVRISGPNAYAIALCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED  E   HG   V++ +++E +     RLA PGEFS RAF N KIDL
Sbjct: 64  VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKE-SIAAGARLARPGEFSERAFLNDKIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ADLI + ++   R++++ + G+ S    Q  ++L ++R ++EA +DF E E++ 
Sbjct: 123 IQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPE-EEID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +   V   +  +   +    SQ   G ++R G  +VI G  NAGKS+L N LA +DVA
Sbjct: 182 FLNDGNVSQLLQRIIGRLEEIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGRDVA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRD++   + L+   + I DTAG+R++DD+VEKEGIKR + E++ AD +LL+
Sbjct: 242 IVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVLLV 301

Query: 306 KEINSKKE---------ISFPKNIDFIFIGTKSD--LYSTYTEEYDHLISSFTGEGLEEL 354
            +IN+  +         ++ P  I  I +  K D    +   +E+   +S+ TGEGL+EL
Sbjct: 302 VDINNPDQQNSLHNELKLTLPDKIPIITVYNKIDTTKLTAKCDEHTVYLSAKTGEGLDEL 361

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLAS 413
              IK ++   ++       + +RHL  L +    L        +    +++AE+LRLA 
Sbjct: 362 KKVIKQVV--GYQPTEGQFLARRRHLQALDEAKALLLTGQSQLTNHKAGELLAEDLRLAH 419

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L +ITG    + LL  IFS FCIGK
Sbjct: 420 QTLCEITGEFTSDDLLGKIFSSFCIGK 446


>gi|254718104|ref|ZP_05179915.1| tRNA modification GTPase TrmE [Brucella sp. 83/13]
 gi|265983057|ref|ZP_06095792.1| tRNA modification GTPase mnmE [Brucella sp. 83/13]
 gi|264661649|gb|EEZ31910.1| tRNA modification GTPase mnmE [Brucella sp. 83/13]
          Length = 442

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 203/437 (46%), Positives = 295/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TIFA+S+G LPS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+ 
Sbjct: 8   HDTIFALSSGRLPSGVAVIRISGPKTRFVYETICQ-AIPEPRHAALLTFRSRNGDAIDRS 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + FP+P SFTGED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+D
Sbjct: 67  LTLFFPTPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMD 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE LADLI++ETE QRRL+++  SG    LY +W  +L + R+FIEA+LDF++E DV
Sbjct: 127 LTIAEGLADLIAAETEGQRRLALQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S +V   +  LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DV
Sbjct: 187 PGSVSMQVWRQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++  GTTRD+L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L 
Sbjct: 247 AIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLS 306

Query: 305 LKEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L++++    ++  K   +   IGTK+DL    +  + + IS+ TG GLE+L++ +++   
Sbjct: 307 LEDMSGPVPVTVEKIEAETWLIGTKADLGGRASGLWKYRISTMTGSGLEQLLDALQAFAE 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            K  ++  ++P+ +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG V
Sbjct: 367 AKIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDV 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE++LD+IFS+FCIGK
Sbjct: 426 DVEEILDVIFSQFCIGK 442


>gi|66048357|ref|YP_238198.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. syringae
           B728a]
 gi|81307750|sp|Q4ZL12|MNME_PSEU2 RecName: Full=tRNA modification GTPase mnmE
 gi|63259064|gb|AAY40160.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Pseudomonas syringae pv. syringae
           B728a]
          Length = 456

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 166/461 (36%), Positives = 247/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + IIR+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIIRVSGPLAGKAAEAIIGRTL-KPRFAHYGPFVDGTGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL     +  T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPINLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|218931079|ref|YP_002348954.1| tRNA modification GTPase TrmE [Yersinia pestis CO92]
 gi|21363009|sp|Q8Z9U2|MNME_YERPE RecName: Full=tRNA modification GTPase mnmE
 gi|115349690|emb|CAL22671.1| putative thiophene and furan oxidation protein [Yersinia pestis
           CO92]
          Length = 454

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 158/456 (34%), Positives = 244/456 (53%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      + I+R+SG +  +V   +   K P PR A    F  +DG  LD
Sbjct: 2   STTDTIVAQATPPGRGGVGILRVSGRAASEVAHAVLG-KLPKPRYADYLPFKDVDGSTLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE +D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADRV 299

Query: 303 LLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +                 P  +    +  K+D+       +         +S+
Sbjct: 300 LFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTKVNGHSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L + +K  +            + + HL  L    R+L             ++
Sbjct: 360 RTGEGIDLLRDHLKQSM-GFTSNTEGGFLARRPHLQALETAARHLIQGHEQLVSAYAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|192361438|ref|YP_001984273.1| tRNA modification GTPase TrmE [Cellvibrio japonicus Ueda107]
 gi|190687603|gb|ACE85281.1| tRNA modification GTPase TrmE [Cellvibrio japonicus Ueda107]
          Length = 455

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 158/459 (34%), Positives = 245/459 (53%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A++T      + I+R+SGP    + E +       PR A    F    G  
Sbjct: 1   MNPNTDTIAAIATATGRGGVGIVRISGPKARFIAERLLG-IPLQPRHAHFCDFRSHSGDT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP+P SFTGED  E   HGG  +++ +L E+ ++  +RLA PGEFS RAF N
Sbjct: 60  LDQGIALFFPNPHSFTGEDVLELQGHGGPVILDLLLREILQL-GVRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + TE   R ++  + G  S      ++ L H+R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIDATTEQAARNALHSLQGAFSKRIQDLVESLIHLRIYVEASIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  +V  D+  + + + S   + + G ++R+G ++VI G  NAGKSSL NAL+
Sbjct: 179 -EEIDFLSDGKVARDLDDICHRLDSVFKEARQGALVRDGMRVVIAGRPNAGKSSLLNALS 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT I GTTRDVL   + +EG  + I DTAG+R++ D VE+ GI+R + E++ AD
Sbjct: 238 GRESAIVTPIEGTTRDVLREHIHIEGMPLHIIDTAGLRDSPDEVEQIGIQRAWSEIQQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYDHLI------ 343
            +LLL +     E                      +  K DL       +++        
Sbjct: 298 RVLLLVDSRHTAETDPRLIWPEFVDKLDDPHKITLVRNKIDLSGEQAGLFENTRGQDYLG 357

Query: 344 -SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CG 401
            S+ TG G++ L + +K+I+            + +RHL  L +   +L       +    
Sbjct: 358 ISAATGSGMDALKDHLKAIV-GFNASGEGGFTARRRHLDALERAQHFLNAGQAQLQGFAA 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 GELLAEDLRQAQHALGEITGEFTPDDLLGRIFSSFCIGK 455


>gi|307611884|emb|CBX01600.1| hypothetical protein LPW_32871 [Legionella pneumophila 130b]
          Length = 446

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 159/447 (35%), Positives = 255/447 (57%), Gaps = 16/447 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + I+R+SGP+ + +   +   K   PR A+    +  +  +LD+GL
Sbjct: 4   DTIVAIATPPGRGGVGIVRISGPNAYAIALCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED  E   HG   V++ +++E +     RLA PGEFS RAF N KIDL
Sbjct: 64  VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKE-SIAAGARLARPGEFSERAFLNDKIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ADLI + ++   R++++ + G+ S    Q  ++L ++R ++EA +DF E E++ 
Sbjct: 123 IQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPE-EEID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +   V   +  +   +    SQ   G ++R G  +VI G  NAGKS+L N LA +DVA
Sbjct: 182 FLNDGNVSQLLQRIIGRLEEIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGRDVA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRD++   + L+   + I DTAG+R++DD+VEKEGIKR + E++ AD +LL+
Sbjct: 242 IVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVLLV 301

Query: 306 KEINSKKE---------ISFPKNIDFIFIGTKSD--LYSTYTEEYDHLISSFTGEGLEEL 354
            +IN+  +         ++ P  I  I +  K D    +   +E+   +S+ TGEGL+EL
Sbjct: 302 VDINNPDQQDSLLNELRLTLPNKIPIITVYNKIDTTKLTAKCDEHTVYLSAKTGEGLDEL 361

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLAS 413
              IK ++   ++       + +RHL  L +    L        +    +++AE+LRLA 
Sbjct: 362 KKVIKQVV--GYQPTEGQFLARRRHLQALDEAKALLLTGQSQLTNHKAGELLAEDLRLAH 419

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L +ITG    + LL  IFS FCIGK
Sbjct: 420 QTLCEITGEFTSDDLLGKIFSSFCIGK 446


>gi|329297776|ref|ZP_08255112.1| tRNA modification GTPase TrmE [Plautia stali symbiont]
          Length = 454

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 156/458 (34%), Positives = 246/458 (53%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG    +V + +   K P PR A    F   DG +
Sbjct: 1   MSH-SDTIVAQATPPGRGGVGILRISGAKAAEVAQAVLG-KLPKPRYADYLPFNDADGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P++R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPSVRIAQPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S      ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSLYVKALVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D++   ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEVQLNAVIGDLNGVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +                 P  +    +  K+D+       +         +
Sbjct: 298 RVLFMVDGTTTDATEANAIWPDFVARLPAALPITVVRNKADMTGETLGLTEVNGHSLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TG G++ L   +K  +      +     + +RHL  L     +L+            
Sbjct: 358 SARTGAGVDTLREHLKQSM-GFAGNMEGGFLARRRHLQALELAATHLQQGKEQLLGAWAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|205371772|sp|Q8CX52|MNME_SHEON RecName: Full=tRNA modification GTPase mnmE
          Length = 453

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/455 (35%), Positives = 255/455 (56%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P PR A   YF    G+++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRISGDKATNVAMAVLG-HLPKPRYADYCYFKSASGQVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+
Sbjct: 61  GIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S    + +D++TH+R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++ N +  + + + +  +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIANALYKIIDKLIAVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSF 346
            + +  +   +             P N+    I  K+DL     E  +      + IS+ 
Sbjct: 300 FMVDGTTTTAVDPHDIWPDFINRLPTNLGVTVIRNKADLTGENLEMTEEKGYSVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G++EL   +KS++  +   L     + +RHL  L     +L++     E     +++
Sbjct: 360 TGLGVDELKQHLKSLMGYQ-SNLEGGFIARRRHLEALEIAASHLQLGKEQLEVYLAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|254851886|ref|ZP_05241234.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-503]
 gi|254992368|ref|ZP_05274558.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-064]
 gi|300763431|ref|ZP_07073429.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N1-017]
 gi|258605181|gb|EEW17789.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-503]
 gi|300515708|gb|EFK42757.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N1-017]
          Length = 457

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 148/457 (32%), Positives = 242/457 (52%), Gaps = 21/457 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHLISS 345
            ILL+        +  +         +++ +  K+DL +            E      S 
Sbjct: 301 FILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVRELAGENPIVSTSL 360

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLD 403
              EGLE L   IK++           +  S+ RH+  L Q +  L   +   +    +D
Sbjct: 361 VNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHITLLHQALEALNGVTTGIQLGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 421 IVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|323493772|ref|ZP_08098890.1| tRNA modification GTPase TrmE [Vibrio brasiliensis LMG 20546]
 gi|323311906|gb|EGA65052.1| tRNA modification GTPase TrmE [Vibrio brasiliensis LMG 20546]
          Length = 453

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/455 (35%), Positives = 246/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   +V   +  K+   PR A    F   DG  LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPLASKVALEVTGKEL-RPRYAEYLPFTAEDGSQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  EF  HGG  V++ +++ + K+  +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVVEFQGHGGPVVMDMLIKRILKISGIRTARPGEFSERAFLNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G  S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVAADLQTIIDNLAAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWEEISQADRVL 299

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    K+I        P+NI    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTDATDPKDIWPDFVDRLPENIGMTVIRNKADQTGEDLGICHVNDPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG+G+E L   +K  +            + +RHL  L +   +LE+     E     +I+
Sbjct: 360 TGDGVEALRTHLKECM-GFAGGNEGGFMARRRHLEALERAAEHLEIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRITQQHLSEITGEFSSDDLLGRIFSSFCIGK 453


>gi|330876348|gb|EGH10497.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 456

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/461 (35%), Positives = 247/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  + I  +  P PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKTAQAITGRM-PKPRFAHYGPFADESGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGVFSLRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLGMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL     +  T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDSIALQTSADGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|254827379|ref|ZP_05232066.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N3-165]
 gi|258599757|gb|EEW13082.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N3-165]
          Length = 457

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 148/457 (32%), Positives = 243/457 (53%), Gaps = 21/457 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---------ISS 345
            ILL+        +  +         +++ +  K+DL +    +  H           S 
Sbjct: 301 FILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDIDRVHELAGENPIVSTSL 360

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLD 403
              EGLE L   IK++           +  S+ RH+  L Q +  L   +   +    +D
Sbjct: 361 VNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 421 IVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|260558088|ref|ZP_05830299.1| tRNA modification GTPase TrmE [Acinetobacter baumannii ATCC 19606]
 gi|260408442|gb|EEX01749.1| tRNA modification GTPase TrmE [Acinetobacter baumannii ATCC 19606]
          Length = 454

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/459 (37%), Positives = 261/459 (56%), Gaps = 24/459 (5%)

Query: 1   MN--HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           MN  H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG
Sbjct: 1   MNNMHSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADG 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAF
Sbjct: 61  SIMDEGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GAIAAKAGEFSMRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           ENGK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF
Sbjct: 120 ENGKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDF 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E E++   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NA
Sbjct: 180 PE-EEIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA  + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VEKEGI+R   E+E 
Sbjct: 239 LAGVERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQ 298

Query: 299 ADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ADL+LL+ ++N   +             +    + IG K DL     E  D+       +
Sbjct: 299 ADLLLLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITV 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401
           S+    G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G
Sbjct: 359 SAKQEMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 -ELVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|239503914|ref|ZP_04663224.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB900]
          Length = 451

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/455 (36%), Positives = 259/455 (56%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 2   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDTDGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GAIAAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF E E
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPE-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 180 EIDFLADGKILALLEDVQQSVHAVQTSARQGKLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFT 347
           LL+ ++N   +             +    + IG K DL     E  D+       +S+  
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
             G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|237809900|ref|YP_002894340.1| tRNA modification GTPase TrmE [Tolumonas auensis DSM 9187]
 gi|237502161|gb|ACQ94754.1| tRNA modification GTPase TrmE [Tolumonas auensis DSM 9187]
          Length = 453

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 172/453 (37%), Positives = 259/453 (57%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      I I+R+SGP C  V E +   K P  R A L  F  +DG+ LD+G+
Sbjct: 4   DTIVALATPPGRGGIGILRISGPLCKLVAEQVLG-KIPKVRHAELLPFCDVDGKALDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            ++F +P SFTGED  E   HGG  V++ +L  +  +  +RLA PGEFS RAF N K+DL
Sbjct: 63  ALLFKAPYSFTGEDVLELQGHGGPVVLDMLLRRILTINGVRLARPGEFSERAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M+ + GE S+   Q +D LT++R ++EA +DF E E++ 
Sbjct: 123 AQAEAIADLIEATSEQAARSAMQSLQGEFSTRIHQLVDSLTNLRIYVEAAIDFPE-EEID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S   + N +  + +D++    + + G ++R+G K+VI G  NAGKSSL NALA ++ A
Sbjct: 182 FLSDGRIANALYGVMDDLAQVKREAQQGALLRDGMKVVIAGRPNAGKSSLLNALAGRESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+TDD VEK GI+R + E+E AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTDDTVEKIGIERAWAEIEQADRVLFM 301

Query: 306 KEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTG 348
            +  +                 P+N+    +  K+DL       S       + IS+ TG
Sbjct: 302 VDGTTTDARNPHDLWPDFVDRLPENLGITVVRNKADLTGEALTVSEENGYAVYPISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            GL+ L   +K+ +  +   L     + +RHL  + +    L+ A +  E     +++AE
Sbjct: 362 LGLDALREHLKACMGFQ-STLEGGFIARRRHLDAIERASERLDEAKVQLEIYLAGELVAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRLAQEALSEITGAFSADDLLGRIFSSFCIGK 453


>gi|293572712|ref|ZP_06683676.1| tRNA modification GTPase TrmE [Enterococcus faecium E980]
 gi|291607204|gb|EFF36562.1| tRNA modification GTPase TrmE [Enterococcus faecium E980]
          Length = 465

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 144/463 (31%), Positives = 248/463 (53%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG    Q+ + +     K      S    +G    
Sbjct: 4   ITLEFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYHSGNKRLSEVPSHTIHYGHIVD 63

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               +++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF+
Sbjct: 64  PKSDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E 
Sbjct: 123 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEV 182

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSS
Sbjct: 183 NIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSS 242

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+  
Sbjct: 243 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRK 302

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE---------EY 339
            +  ADLILL+           ++ +     +  I +  K+DL +   +         E 
Sbjct: 303 ALAEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLNKWNENEP 362

Query: 340 DHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NE 397
              IS    +GL+ L + I  +    +  +   +  S+ RH+  L +    LE      +
Sbjct: 363 VFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTRHIALLEKASLSLEEVIAGID 422

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465


>gi|261206911|ref|ZP_05921600.1| tRNA modification GTPase mnmE [Enterococcus faecium TC 6]
 gi|289567290|ref|ZP_06447669.1| tRNA modification GTPase TrmE [Enterococcus faecium D344SRF]
 gi|294616665|ref|ZP_06696436.1| tRNA modification GTPase TrmE [Enterococcus faecium E1636]
 gi|260078539|gb|EEW66241.1| tRNA modification GTPase mnmE [Enterococcus faecium TC 6]
 gi|289160909|gb|EFD08830.1| tRNA modification GTPase TrmE [Enterococcus faecium D344SRF]
 gi|291590485|gb|EFF22223.1| tRNA modification GTPase TrmE [Enterococcus faecium E1636]
          Length = 465

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 144/463 (31%), Positives = 248/463 (53%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG    Q+ + +     K      S    +G    
Sbjct: 4   ITLEFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSHTIHYGHVVD 63

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               +++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF+
Sbjct: 64  PKSNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E 
Sbjct: 123 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEV 182

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSS
Sbjct: 183 NIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSS 242

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+  
Sbjct: 243 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRK 302

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE---------EY 339
            +  ADLILL+           ++ +     +  I +  K+DL +   +         E 
Sbjct: 303 ALAEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEP 362

Query: 340 DHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NE 397
              IS    +GL+ L + I  +    +  +   +  S+ RH+  L +    LE      +
Sbjct: 363 VFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTRHIALLEKASLSLEEVIAGID 422

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465


>gi|217965982|ref|YP_002351660.1| tRNA modification GTPase TrmE [Listeria monocytogenes HCC23]
 gi|226225361|ref|YP_002759468.1| GTPase [Listeria monocytogenes Clip81459]
 gi|254824824|ref|ZP_05229825.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-194]
 gi|254930915|ref|ZP_05264274.1| tRNA modification GTPase TrmE [Listeria monocytogenes HPB2262]
 gi|284800302|ref|YP_003412167.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5578]
 gi|284993487|ref|YP_003415255.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5923]
 gi|217335252|gb|ACK41046.1| tRNA modification GTPase TrmE [Listeria monocytogenes HCC23]
 gi|225877823|emb|CAS06538.1| Putative GTPase [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|284055864|gb|ADB66805.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5578]
 gi|284058954|gb|ADB69893.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5923]
 gi|293582461|gb|EFF94493.1| tRNA modification GTPase TrmE [Listeria monocytogenes HPB2262]
 gi|293594064|gb|EFG01825.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-194]
 gi|307572401|emb|CAR85580.1| tRNA modification GTPase [Listeria monocytogenes L99]
 gi|328469044|gb|EGF39998.1| tRNA modification GTPase TrmE [Listeria monocytogenes 220]
 gi|332313241|gb|EGJ26336.1| tRNA modification GTPase mnmE [Listeria monocytogenes str. Scott A]
          Length = 457

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 148/457 (32%), Positives = 242/457 (52%), Gaps = 21/457 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHLISS 345
            ILL+        +  +         +++ +  K+DL +            E      S 
Sbjct: 301 FILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVRELAGENPIVSTSL 360

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLD 403
              EGLE L   IK++           +  S+ RH+  L Q +  L   +   +    +D
Sbjct: 361 VNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 421 IVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|312882243|ref|ZP_07741989.1| tRNA modification GTPase TrmE [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370087|gb|EFP97593.1| tRNA modification GTPase TrmE [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 453

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/455 (35%), Positives = 242/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   QV   I   K   PR A    F   DG  +D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPLATQVASEITG-KDLRPRYAEYLAFKAQDGTEIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +P LR A PGEFS RAF N K+
Sbjct: 61  GIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTIPGLRTARPGEFSERAFLNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + ++  + G  S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLAQAEAIADLIDASSEEAAKSALMSLQGAFSGRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVAGDLQSIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWEEISQADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            + +  + +E              P NI    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTQETDPKQIWPDFIDRLPDNIGITVIRNKADQTDEPLGICHVNDPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TGEG+E L   +K  +            + +RHL  L +   +L++     E     +I+
Sbjct: 360 TGEGVESLRLHLKQCM-GFSGSNEGGFMARRRHLEALDRAAEHLQIGQQQLESYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRITQQHLSEITGEFSSDDLLGRIFSSFCIGK 453


>gi|116254463|ref|YP_770301.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. viciae
           3841]
 gi|205415801|sp|Q1MA18|MNME_RHIL3 RecName: Full=tRNA modification GTPase mnmE
 gi|115259111|emb|CAK10222.1| putative tRNA modification GTPase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 439

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 209/441 (47%), Positives = 295/441 (66%), Gaps = 3/441 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI+A+S+GA PS +S++R+SGP    +   +     P  R  S R     + + 
Sbjct: 1   MAMLSDTIYALSSGAPPSGVSVVRVSGPLTRDILVKLVGS-VPAARHVSHRTIRTRNNQP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GL++ FP+P SFTGED AE  +HG  AV+  +   L  +P +R+A  GEFSRRAFEN
Sbjct: 60  IDSGLVLFFPAPNSFTGEDVAELQIHGSRAVLAALFHALGDIPGVRMAVEGEFSRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL+E E LADLI +ETEMQRRL++E  +G LS++Y  W ++LT  R+ +EA+LDF E
Sbjct: 120 GKLDLVEVEGLADLIGAETEMQRRLAVEHSAGGLSAIYDSWAERLTRARALVEAELDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+DV    S  V  D+  L++DI  H++    GEIIR+G+K+VI G  NAGKSSL NALA
Sbjct: 180 EDDVPGSVSDAVWADMAKLRSDIGDHLAAASAGEIIRDGFKVVIAGAPNAGKSSLLNALA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++DVAIVT+I GTTRDVL +DLD++GYL+K+ DTAG+RE DD VE EG++R  + + +AD
Sbjct: 240 RRDVAIVTEIAGTTRDVLQVDLDIDGYLIKLFDTAGLREADDKVEMEGVRRARVALRDAD 299

Query: 301 LILLLKEINSKK-EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
           L+LLL ++          ++   + +GTK DL    +  YD  IS+ TG+GL EL   I 
Sbjct: 300 LVLLLVDMTKPLIPDDLEQSSPHVTVGTKKDLTEVNSGRYDLQISTATGDGLPELRRLIG 359

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
            I+  +F  L  +IPS +RH   L++ +  L++A L++ D  L++  E LR+A+  LG+I
Sbjct: 360 DIVERRFAGLSMAIPSRQRHKDSLAKCLAALDVA-LSQTDVNLELRTEQLRIAAEYLGRI 418

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG VDVEQLL +IFS+FCIGK
Sbjct: 419 TGRVDVEQLLGVIFSEFCIGK 439


>gi|330970320|gb|EGH70386.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 456

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/461 (35%), Positives = 247/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKAAEAIIGRTL-KPRFAHYGPFVDGTGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGE+  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGENVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL     +  T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPINLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|313111481|ref|ZP_07797282.1| putative GTPase for tRNA modification and thiophene and furan
           oxidation [Pseudomonas aeruginosa 39016]
 gi|310883784|gb|EFQ42378.1| putative GTPase for tRNA modification and thiophene and furan
           oxidation [Pseudomonas aeruginosa 39016]
          Length = 455

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 156/459 (33%), Positives = 243/459 (52%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    ETI A++T      + I+R+SGP   Q+   +  ++    R A    F    G++
Sbjct: 1   MQAATETIVAIATAQGRGGVGIVRVSGPLAGQMAVAVSGRQL-KARHAHYGPFLDAGGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GL + FP P SFTGED  E   HGG  V++ +++   ++   R A PGEFS RAF N
Sbjct: 60  IDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLEL-GARQARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + GE S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  ++ ++S+   +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+T+D VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSD-------LYSTYTEEYDHL 342
            +LL+ +  + +               P+      I  K+D       L  +        
Sbjct: 298 RVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIGLEESADGHVTIT 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ T  GLE L   +K+ +  + +       + +RHL  L Q  + LE         G 
Sbjct: 358 LSARTSAGLELLREHLKACMGFE-QTAESGFSARRRHLEALRQAGQALEHGHSQLIHNGA 416

Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LR A   LG+ITG    + LL  IFS FCIGK
Sbjct: 417 GELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455


>gi|16802002|ref|NP_472270.1| tRNA modification GTPase TrmE [Listeria innocua Clip11262]
 gi|21363013|sp|Q926U7|MNME_LISIN RecName: Full=tRNA modification GTPase mnmE
 gi|16415484|emb|CAC98168.1| lin2943 [Listeria innocua Clip11262]
          Length = 457

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 148/457 (32%), Positives = 242/457 (52%), Gaps = 21/457 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHLISS 345
            ILL+        +  +         +++ +  K+DL +            E      S 
Sbjct: 301 FILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVRELAGENPIVSTSL 360

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLD 403
              EGLE L   IK++           +  S+ RH+  L Q +  L   +   +    +D
Sbjct: 361 VNDEGLEALEEAIKALFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 421 IVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|254830753|ref|ZP_05235408.1| tRNA modification GTPase TrmE [Listeria monocytogenes 10403S]
          Length = 457

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 148/457 (32%), Positives = 242/457 (52%), Gaps = 21/457 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHLISS 345
            ILL+        +  +         +++ +  K+DL +            E      S 
Sbjct: 301 FILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVRELAGENPIVSTSL 360

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLD 403
              EGLE L   IK++           +  S+ RH+  L Q +  L   +   +    +D
Sbjct: 361 VNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 421 IVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|90023653|ref|YP_529480.1| tRNA modification GTPase TrmE [Saccharophagus degradans 2-40]
 gi|123395362|sp|Q21DG1|MNME_SACD2 RecName: Full=tRNA modification GTPase mnmE
 gi|89953253|gb|ABD83268.1| tRNA modification GTPase trmE [Saccharophagus degradans 2-40]
          Length = 456

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 253/458 (55%), Gaps = 23/458 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
               ETI A++T      + IIR+SGP    + + I     P PR A    F   +G IL
Sbjct: 3   TQTNETIAAIATAPGRGGVGIIRVSGPKALPIAQHILG-ITPKPRYAHYGDFCNANGDIL 61

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+G+ + FP+P SFTGED  E   HGG  +++ +L+ + +    RLA PGEFS RAF N 
Sbjct: 62  DQGIALYFPNPHSFTGEDVLELQGHGGPVILDMLLDAVVQA-GARLARPGEFSERAFLND 120

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ADLI + ++   + ++  + GE S+   + +++L H+R ++E+ +DF E 
Sbjct: 121 KLDLAQAEAIADLIEASSQQAAKQALNSLKGEFSNKIHELVEQLIHLRMYVESAIDFPE- 179

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E++   S   V   +  + +   + ++Q + G ++R+G K+VI G  NAGKSSL NALA+
Sbjct: 180 EEIDFLSDGIVEGKLNDVIDQTDAVLAQAQQGALLRDGMKVVIAGRPNAGKSSLLNALAE 239

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           KD+AIVT+I GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI+R + E+E+AD 
Sbjct: 240 KDIAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDHVEQIGIERAWGEIESADR 299

Query: 302 ILLLKEINSKKEISFPKNID-----------FIFIGTKSD----LYSTYTEEYDHLI--- 343
           ILLL +     ++    +                I  K D      + +T +  +     
Sbjct: 300 ILLLIDTTDNSQLDVNVHWPEFTSNAAYAKKLTVIYNKIDESGFSTTNHTSDAPYQTLPL 359

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
           S+ TG GL+ L   +KS++  +         + +RH++ + Q   YL       +     
Sbjct: 360 SAKTGAGLDTLKAHLKSVMGFQ-STTEGGFSARRRHIHAIEQAQNYLLTGREQLQLHTAG 418

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE+LR A   L +ITG    + LL  IFS FCIGK
Sbjct: 419 ELLAEDLRAAQNHLSEITGAFTPDDLLGKIFSSFCIGK 456


>gi|257878640|ref|ZP_05658293.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,230,933]
 gi|257881306|ref|ZP_05660959.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,502]
 gi|257893099|ref|ZP_05672752.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,408]
 gi|258615276|ref|ZP_05713046.1| tRNA modification GTPase TrmE [Enterococcus faecium DO]
 gi|260558221|ref|ZP_05830417.1| tRNA modification GTPase mnmE [Enterococcus faecium C68]
 gi|293563245|ref|ZP_06677697.1| tRNA modification GTPase TrmE [Enterococcus faecium E1162]
 gi|293569165|ref|ZP_06680471.1| tRNA modification GTPase TrmE [Enterococcus faecium E1071]
 gi|294619739|ref|ZP_06699144.1| tRNA modification GTPase TrmE [Enterococcus faecium E1679]
 gi|294623753|ref|ZP_06702581.1| tRNA modification GTPase TrmE [Enterococcus faecium U0317]
 gi|257812868|gb|EEV41626.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,230,933]
 gi|257816964|gb|EEV44292.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,502]
 gi|257829478|gb|EEV56085.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,408]
 gi|260075395|gb|EEW63701.1| tRNA modification GTPase mnmE [Enterococcus faecium C68]
 gi|291588134|gb|EFF19976.1| tRNA modification GTPase TrmE [Enterococcus faecium E1071]
 gi|291594009|gb|EFF25478.1| tRNA modification GTPase TrmE [Enterococcus faecium E1679]
 gi|291596707|gb|EFF27930.1| tRNA modification GTPase TrmE [Enterococcus faecium U0317]
 gi|291604784|gb|EFF34266.1| tRNA modification GTPase TrmE [Enterococcus faecium E1162]
          Length = 465

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 144/463 (31%), Positives = 248/463 (53%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG    Q+ + +     K      S    +G    
Sbjct: 4   ITLEFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSHTIHYGHIVD 63

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               +++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF+
Sbjct: 64  PKSNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E 
Sbjct: 123 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEV 182

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSS
Sbjct: 183 NIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSS 242

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+  
Sbjct: 243 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRK 302

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE---------EY 339
            +  ADLILL+           ++ +     +  I +  K+DL +   +         E 
Sbjct: 303 ALAEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEP 362

Query: 340 DHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NE 397
              IS    +GL+ L + I  +    +  +   +  S+ RH+  L +    LE      +
Sbjct: 363 VFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTRHIALLEKASLSLEEVIAGID 422

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 423 SGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465


>gi|255026481|ref|ZP_05298467.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-003]
          Length = 457

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 148/457 (32%), Positives = 242/457 (52%), Gaps = 21/457 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHLISS 345
            ILL+        +  +         +++ +  K+DL +            E      S 
Sbjct: 301 FILLVLNQSEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVRELAGENPIVSTSL 360

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLD 403
              EGLE L   IK++           +  S+ RH+  L Q +  L   +   +    +D
Sbjct: 361 VNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 421 IVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|298484604|ref|ZP_07002709.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160861|gb|EFI01877.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 456

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/461 (35%), Positives = 245/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +  P PR A    F    G+ 
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLASKAAEAIIGR-TPKPRFAHYGPFVDEAGQT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDPIDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    G GLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGAGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|46909000|ref|YP_015389.1| tRNA modification GTPase TrmE [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093270|ref|ZP_00231041.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 4b
           H7858]
 gi|290891992|ref|ZP_06554989.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-071]
 gi|67461967|sp|Q71VV0|MNME_LISMF RecName: Full=tRNA modification GTPase mnmE
 gi|46882273|gb|AAT05566.1| tRNA modification GTPase TrmE [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018344|gb|EAL09106.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 4b
           H7858]
 gi|290558586|gb|EFD92103.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-071]
          Length = 457

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 148/457 (32%), Positives = 242/457 (52%), Gaps = 21/457 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHLISS 345
            ILL+        +  +         +++ +  K+DL +            E      S 
Sbjct: 301 FILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDIDRVRELAGENPIVSTSL 360

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLD 403
              EGLE L   IK++           +  S+ RH+  L Q +  L   +   +    +D
Sbjct: 361 VNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 421 IVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|332873302|ref|ZP_08441257.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6014059]
 gi|332738508|gb|EGJ69380.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6014059]
          Length = 451

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 169/455 (37%), Positives = 259/455 (56%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 2   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GAIAAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF E E
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPE-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 180 EIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFT 347
           LL+ ++N   +             +    + IG K DL     E  D+       +S+  
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
             G++ L++ I  I    F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVDAI--IAHAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|184156330|ref|YP_001844669.1| tRNA modification GTPase TrmE [Acinetobacter baumannii ACICU]
 gi|183207924|gb|ACC55322.1| predicted GTPase [Acinetobacter baumannii ACICU]
          Length = 451

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/455 (36%), Positives = 259/455 (56%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 2   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPHSFTGEDVVELQSHGGPVIQNALLGRLFEL-GAIAAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF E E
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPE-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 180 EIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFT 347
           LL+ ++N   +             +    + IG K DL     E  D+       +S+  
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQPAEISDYQGFRHITVSAKQ 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
             G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|257885581|ref|ZP_05665234.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,501]
 gi|293553541|ref|ZP_06674168.1| tRNA modification GTPase TrmE [Enterococcus faecium E1039]
 gi|257821437|gb|EEV48567.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,501]
 gi|291602296|gb|EFF32521.1| tRNA modification GTPase TrmE [Enterococcus faecium E1039]
          Length = 465

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 144/463 (31%), Positives = 248/463 (53%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG    Q+ + +     K      S    +G    
Sbjct: 4   ITLEFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSHTIHYGHIVD 63

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               +++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF+
Sbjct: 64  PKSNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E 
Sbjct: 123 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEV 182

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSS
Sbjct: 183 NIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSS 242

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+  
Sbjct: 243 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRK 302

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE---------EY 339
            +  ADLILL+           ++ +     +  I +  K+DL +   +         E 
Sbjct: 303 ALAEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEP 362

Query: 340 DHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NE 397
              IS    +GL+ L + I  +    +  +   +  S+ RH+  L +    LE      +
Sbjct: 363 VFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTRHIALLEKASLSLEEVIAGID 422

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465


>gi|16804848|ref|NP_466333.1| tRNA modification GTPase TrmE [Listeria monocytogenes EGD-e]
 gi|47095618|ref|ZP_00233226.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224502775|ref|ZP_03671082.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-561]
 gi|254899731|ref|ZP_05259655.1| tRNA modification GTPase TrmE [Listeria monocytogenes J0161]
 gi|254913066|ref|ZP_05263078.1| tRNA modification GTPase trmE [Listeria monocytogenes J2818]
 gi|254937447|ref|ZP_05269144.1| tRNA modification GTPase TrmE [Listeria monocytogenes F6900]
 gi|255028100|ref|ZP_05300051.1| tRNA modification GTPase TrmE [Listeria monocytogenes LO28]
 gi|21363006|sp|Q8Y3M4|MNME_LISMO RecName: Full=tRNA modification GTPase mnmE
 gi|16412311|emb|CAD01024.1| lmo2811 [Listeria monocytogenes EGD-e]
 gi|47016048|gb|EAL06973.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258610049|gb|EEW22657.1| tRNA modification GTPase TrmE [Listeria monocytogenes F6900]
 gi|293591067|gb|EFF99401.1| tRNA modification GTPase trmE [Listeria monocytogenes J2818]
          Length = 457

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 148/457 (32%), Positives = 242/457 (52%), Gaps = 21/457 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHLISS 345
            ILL+        +  +         +++ +  K+DL +            E      S 
Sbjct: 301 FILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDIDRVRELAGENPIVSTSL 360

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLD 403
              EGLE L   IK++           +  S+ RH+  L Q +  L   +   +    +D
Sbjct: 361 VNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 421 IVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|311696589|gb|ADP99462.1| tRNA modification GTPase TrmE [marine bacterium HP15]
          Length = 468

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/460 (35%), Positives = 250/460 (54%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TI A++T    + + I+R+SGP    + + +   + P PR A    F    G +
Sbjct: 13  MSQSSDTIAAIATAPGQAGVGIVRISGPKSLAIAKKMLGFE-PKPRYAHYGPFHDSHGEL 71

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + FP+P SFTGED  E   HGG  +++ +L E+      RLA PGEFS RAF N
Sbjct: 72  IDEGIGLFFPNPHSFTGEDVFELQGHGGTVILDLLLREVC-GQGARLARPGEFSERAFLN 130

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI S +E   R ++  M G  S      +D +TH+R ++EA +DF E
Sbjct: 131 DKLDLAQAEAIADLIESSSEQAARCAVRSMQGVFSRQIEDLVDAVTHLRIYVEAAIDFPE 190

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +  +V +D+  L   +   +++ + G I+R+G K+VI G  NAGKSSL NALA
Sbjct: 191 -EEIDFLADGKVASDLQNLLERLGKILAEAQQGTILRDGMKVVIGGRPNAGKSSLLNALA 249

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT I GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI R + E+  AD
Sbjct: 250 GREAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDEVEQIGIARAWEEIRQAD 309

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL--------YSTYTEEYDH 341
            ILL+ +  + ++ S            P N     I  K DL           +      
Sbjct: 310 RILLMVDATTTEKTSPHEIWPDFIDQLPANAPVTVIRNKVDLSGETVGISAEDHQSAPVI 369

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            +++ + EGLE L + +K  +            + +RHL  L +    L       +  G
Sbjct: 370 RLAAKSAEGLEILRDHLKQCM-GFASTTEGGFLARRRHLDALERAQALLIQGQSQLEGFG 428

Query: 402 L-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE+LR A  SLG+ITG +  ++LL  IFS FCIGK
Sbjct: 429 AGELLAEDLRAAQDSLGEITGHLTPDELLGKIFSSFCIGK 468


>gi|330952339|gb|EGH52599.1| tRNA modification GTPase TrmE [Pseudomonas syringae Cit 7]
          Length = 456

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/461 (35%), Positives = 246/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGRAAEAIIGRTL-KPRFAHYGPFVDDAGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|169797809|ref|YP_001715602.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AYE]
 gi|205829063|sp|B0V5S5|MNME_ACIBY RecName: Full=tRNA modification GTPase mnmE
 gi|169150736|emb|CAM88648.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Acinetobacter baumannii AYE]
          Length = 454

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 171/459 (37%), Positives = 261/459 (56%), Gaps = 24/459 (5%)

Query: 1   MN--HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           MN  H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG
Sbjct: 1   MNNMHSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDTDG 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAF
Sbjct: 61  SIMDEGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GAIAAKAGEFSMRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           ENGK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF
Sbjct: 120 ENGKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDF 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E E++   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NA
Sbjct: 180 PE-EEIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA  + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E 
Sbjct: 239 LAGVERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQ 298

Query: 299 ADLILLLKEINSKKEI---------SFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ADL+LL+ ++N   +             +    + IG K DL     E  D+       +
Sbjct: 299 ADLLLLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITV 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401
           S+    G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G
Sbjct: 359 SAKQEMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVIFNAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 -ELVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|257485604|ref|ZP_05639645.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331011892|gb|EGH91948.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 456

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/461 (35%), Positives = 245/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +  P PR A    F    G+ 
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLASKAAEAIIGR-TPKPRFAHYGPFVDEAGQT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDHIDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    G GLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGAGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|54299006|ref|YP_125375.1| tRNA modification GTPase TrmE [Legionella pneumophila str. Paris]
 gi|81822476|sp|Q5X0M3|MNME_LEGPA RecName: Full=tRNA modification GTPase mnmE
 gi|53752791|emb|CAH14226.1| hypothetical protein lpp3073 [Legionella pneumophila str. Paris]
          Length = 446

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 159/447 (35%), Positives = 255/447 (57%), Gaps = 16/447 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + I+R+SGP  + +   +   K   PR A+    +  +  +LD+GL
Sbjct: 4   DTIVAIATPPGRGGVGIVRISGPKAYAIALCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED  E   HG   V++ +++E +     RLA PGEFS RAF N KIDL
Sbjct: 64  VLYFKGPHSFTGEDIIEIQAHGSPVVLDLLIKE-SIAAGARLARPGEFSERAFLNDKIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ADLI + ++   R++++ + G+ S    Q  ++L ++R ++EA +DF E E++ 
Sbjct: 123 IQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPE-EEID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +   V   +  +   +    SQ   G ++R G  +VI G  NAGKS+L N LA +DVA
Sbjct: 182 FLNDGNVSQLLQRIIGRLEEIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGRDVA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRD++   + L+   + I DTAG+R++DD+VEKEGIKR + E++ AD +LL+
Sbjct: 242 IVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVLLV 301

Query: 306 KEINSKKE---------ISFPKNIDFIFIGTKSD--LYSTYTEEYDHLISSFTGEGLEEL 354
            +IN++ +         ++ P  I  I +  K D    +   +E+   +S+ TGEGL+EL
Sbjct: 302 VDINNRDQQNSLLNELRLTLPNKIPIITVYNKIDTTKLTAKCDEHTVYLSAKTGEGLDEL 361

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLAS 413
              IK ++   ++       + +RHL  L +    L        +    +++AE+LRLA 
Sbjct: 362 KKVIKQVV--GYQPTEGQFLARRRHLQALDEAKALLLTGQSQLTNHKAGELLAEDLRLAH 419

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L +ITG    + LL  IFS FCIGK
Sbjct: 420 QTLCEITGEFTSDDLLGKIFSSFCIGK 446


>gi|289628219|ref|ZP_06461173.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649109|ref|ZP_06480452.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330870070|gb|EGH04779.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 456

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/461 (35%), Positives = 246/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +  P PR A    F    G+ 
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLASKAAEAIIGR-TPKPRFAHYGPFVDEAGQT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAVRNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD----HLISS 345
            ILL+ +  + +               P       I  K+DL     +       H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDPIDLQISVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|257899265|ref|ZP_05678918.1| tRNA modification GTPase mnmE [Enterococcus faecium Com15]
 gi|257837177|gb|EEV62251.1| tRNA modification GTPase mnmE [Enterococcus faecium Com15]
          Length = 465

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 144/463 (31%), Positives = 248/463 (53%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG    Q+ + +     K      S    +G    
Sbjct: 4   ITLEFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYHSGNKRLSEVPSHTIHYGHIVD 63

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               +++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF+
Sbjct: 64  PKSDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E 
Sbjct: 123 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEV 182

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSS
Sbjct: 183 NIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSS 242

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+  
Sbjct: 243 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRK 302

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE---------EY 339
            +  ADLILL+           ++ +     +  I +  K+DL +   +         E 
Sbjct: 303 ALAEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLNKWIENEP 362

Query: 340 DHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NE 397
              IS    +GL+ L + I  +    +  +   +  S+ RH+  L +    LE      +
Sbjct: 363 VFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTRHIALLEKASLSLEEVIAGID 422

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465


>gi|322506199|gb|ADX01653.1| TrmE [Acinetobacter baumannii 1656-2]
          Length = 451

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/455 (36%), Positives = 259/455 (56%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 2   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GAIAAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF E E
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPE-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 180 EIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFT 347
           LL+ ++N   +             +    + IG K DL     E  D+       +S+  
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
             G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|26986750|ref|NP_742175.1| tRNA modification GTPase TrmE [Pseudomonas putida KT2440]
 gi|148550508|ref|YP_001270610.1| tRNA modification GTPase TrmE [Pseudomonas putida F1]
 gi|60415983|sp|P0A175|MNME_PSEPK RecName: Full=tRNA modification GTPase mnmE
 gi|60415984|sp|P0A176|MNME_PSEPU RecName: Full=tRNA modification GTPase mnmE
 gi|166234811|sp|A5WBB6|MNME_PSEP1 RecName: Full=tRNA modification GTPase mnmE
 gi|24981340|gb|AAN65639.1|AE016190_5 tRNA modification GTPase [Pseudomonas putida KT2440]
 gi|45710|emb|CAA44418.1| unnamed protein product [Pseudomonas putida]
 gi|148514566|gb|ABQ81426.1| tRNA modification GTPase trmE [Pseudomonas putida F1]
 gi|313496414|gb|ADR57780.1| MnmE [Pseudomonas putida BIRD-1]
          Length = 456

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 161/461 (34%), Positives = 245/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+RLSGP   +    I  +    PR A    F   +G +
Sbjct: 1   MNTVRETIAAIATAQGRGGVGIVRLSGPLAAKAGLLITGRTL-TPRHAHYGPFRDDEGLV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQV-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + GE S       + L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSRRVHSLTEALIALRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL+ +  +++++S+   +   G ++R+G  +VI G  NAGKSSL N LA
Sbjct: 179 -EEIDFLADGHVLSMLDAVRSELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSLLNQLA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRD+L   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFT 347
            +LL+ +  + +               P       I  K+DL       E+ D    + T
Sbjct: 298 RVLLVVDSTAPEASDPFALWPEFLAQRPDPAKVTLIRNKADLSGERVALEQCDDGHVTIT 357

Query: 348 ------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
                   GL+ L + +K  +    +       + +RHL  L Q   +LE   A L    
Sbjct: 358 LSAKGDDTGLQLLRDHLKGCM-GYEQTAESGFSARRRHLDALRQASEHLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|259048142|ref|ZP_05738543.1| tRNA modification GTPase TrmE [Granulicatella adiacens ATCC 49175]
 gi|259035203|gb|EEW36458.1| tRNA modification GTPase TrmE [Granulicatella adiacens ATCC 49175]
          Length = 462

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 146/463 (31%), Positives = 253/463 (54%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL--- 56
           M  E +TI A+ST     AI I+R+SG    ++ + + + K+K    + S    +G    
Sbjct: 1   MQTEFDTIAAISTAPGEGAIGIVRISGEDAIRIADEVYRLKEKRLNEQPSHTIHYGHIVD 60

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             +  ++D+ ++ V  +P++FT ED  E + HGGI  +N IL+ L      RLA PGEF+
Sbjct: 61  PKNDEVIDEVMVTVLRAPKTFTREDVVEINCHGGIVAINRILQ-LVLRRGARLAEPGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG+IDL +AE++ DLI ++T+   +++M  + GELS L      ++ +  + +E 
Sbjct: 120 KRAFLNGRIDLSQAEAVMDLIRAKTDKSMQMAMRQLDGELSKLIQNLRQEILNTLAQVEV 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  + + +      +   I + ++    G+I+R+G K  I+G  N GKSS
Sbjct: 180 NIDYPEYDDVEEMTLQLLREKTQQVSQGIRALLNTASQGKILRDGLKAAIVGRPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTDI GTTRD +   +++ G  +++ DTAGIRETDD+VE+ G++R+  
Sbjct: 240 LLNVLLREEKAIVTDIAGTTRDTIEEYVNVRGVPLQLIDTAGIRETDDVVERIGVERSRK 299

Query: 295 EVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTY---------TEEY 339
            +  AD +LL+   + +      + +   K+   I +  K+DL +           T+  
Sbjct: 300 ALNEADFVLLILNQSEELRDEDLRLLEQTKDFKRIILLNKTDLPTKIDMDKVKEFATDSE 359

Query: 340 DHLISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397
               S    EG+++L  KI       +  +   +  S+ RH+  L +  + L E+A+  +
Sbjct: 360 IVTTSMLKKEGIDQLEEKIADYFFQGQMNERDATYLSNTRHIALLEKAEQALQEVANGVD 419

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D+I  +   A   LG+ITG    ++LL  +FS+FC+GK
Sbjct: 420 MGMPVDLIQIDFTRAWDLLGEITGDTVQDELLTQLFSQFCLGK 462


>gi|15600760|ref|NP_254254.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PAO1]
 gi|107104668|ref|ZP_01368586.1| hypothetical protein PaerPA_01005747 [Pseudomonas aeruginosa PACS2]
 gi|218894669|ref|YP_002443539.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa LESB58]
 gi|14195275|sp|Q9HT07|MNME_PSEAE RecName: Full=tRNA modification GTPase mnmE
 gi|9951908|gb|AAG08952.1|AE004968_6 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|218774898|emb|CAW30717.1| putative GTPase for tRNA modification and thiophene and furan
           oxidation [Pseudomonas aeruginosa LESB58]
          Length = 455

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 156/459 (33%), Positives = 243/459 (52%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    ETI A++T      + I+R+SGP   Q+   +  ++    R A    F    G++
Sbjct: 1   MQAATETIVAIATAQGRGGVGIVRVSGPLAGQMAVAVSGRQL-KARHAHYGPFLDAGGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GL + FP P SFTGED  E   HGG  V++ +++   ++   R A PGEFS RAF N
Sbjct: 60  IDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLEL-GARQARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + GE S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  ++ ++S+   +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+T+D VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSD-------LYSTYTEEYDHL 342
            +LL+ +  + +               P+      I  K+D       L  +        
Sbjct: 298 RVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIGLEESADGHVTIT 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TG GLE L   +K+ +  + +       + +RHL  L    + LE         G 
Sbjct: 358 LSARTGAGLELLREHLKACMGFE-QTAESGFSARRRHLEALRLAGQALEHGHSQLIHNGA 416

Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LR A   LG+ITG    + LL  IFS FCIGK
Sbjct: 417 GELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455


>gi|330812748|ref|YP_004357210.1| tRNA modification GTPase, TrmE [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380856|gb|AEA72206.1| putative tRNA modification GTPase, TrmE [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 456

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/461 (35%), Positives = 248/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  +ETI AV+T      + I+R+SGP      + I  ++   PR A    FF  D ++
Sbjct: 1   MSAPRETIAAVATAQGRGGVGIVRISGPLASVAAKAISGREL-KPRFAHYGPFFSDDQQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGLALYFPGPNSFTGEDVLELQGHGGPVVLDMLLKRCLEL-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLIGLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL+ +  +++++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLSMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRD+L   + ++G  + + DTAG+R+T+D VEK G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTEDQVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL--------YSTYTEEYDH 341
            +LL+ +  + +               P       I  K+DL         S        
Sbjct: 298 RVLLVVDATAPEADDPFALWPEFLEVRPDPAKVTLIRNKADLTGEAIVLEVSNDGHVTIS 357

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
           L +   GEGLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSAKAAGEGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASAALEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  SLG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|114049515|ref|YP_740065.1| tRNA modification GTPase TrmE [Shewanella sp. MR-7]
 gi|123030127|sp|Q0HPE7|MNME_SHESR RecName: Full=tRNA modification GTPase mnmE
 gi|113890957|gb|ABI45008.1| tRNA modification GTPase trmE [Shewanella sp. MR-7]
          Length = 453

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 255/455 (56%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P PR A    F    G+++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRISGDKATDVAMAVLG-HLPKPRYADYCDFKNASGQVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+
Sbjct: 61  GIALYFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S    + +D++TH+R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++ N +  + + +S   +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIANALYKIIDKLSVVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSF 346
            + +  +   +             P N+    +  K+DL       TEE     + IS+ 
Sbjct: 300 FMVDGTTTDAVDPHDIWPDFINRLPANLGVTVVRNKADLTGENLAMTEEKGYSVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++
Sbjct: 360 TGLGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALDIAASHLQLGKEQLEIYLAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|254237759|ref|ZP_04931082.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126169690|gb|EAZ55201.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 455

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 157/459 (34%), Positives = 243/459 (52%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    ETI A++T      + I+R+SGP   Q+   +  ++    R A    F    G++
Sbjct: 1   MQAATETIVAIATAQGRGGVGIVRVSGPLAGQMAVAVSGRQL-KARHAHYGPFLDAGGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GL + FP P SFTGED  E   HGG  V++ +++   ++   R A PGEFS RAF N
Sbjct: 60  IDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLEL-GARQARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + GE S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  ++ ++S+   +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+T+D VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSD-------LYSTYTEEYDHL 342
            +LL+ +  + +               P+      I  K+D       L  +        
Sbjct: 298 RVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIGLEESADGHVTIT 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TG GLE L   +K+ +  + +       + +RHL  L    + LE         G 
Sbjct: 358 LSARTGAGLELLREHLKACMGFE-QTAESGFSARRRHLEALRLAGQALEHGYSQLIHNGA 416

Query: 403 D-IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D ++AE+LR A   LG+ITG    + LL  IFS FCIGK
Sbjct: 417 DELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455


>gi|325577780|ref|ZP_08148055.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160525|gb|EGC72651.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae ATCC
           33392]
          Length = 452

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 166/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + +   K P PR A    F   DG +LD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPKALEVAQAVLG-KCPKPRMADYLPFKDADGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQLDGVRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEAKLREIINQLDLVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST---YTEEYD---HLISSFT 347
           + + +                  P N+    +  K DL        EE       +S+ T
Sbjct: 300 MLDSSDPDSQHIEKVRSEFLSKLPNNMPVTIVRNKVDLSGEAVGLKEENGTTTICLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HQGVDLLREHLKQAMGFQTG-MEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL   +L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQANLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|49476318|ref|YP_034359.1| tRNA modification GTPase TrmE [Bartonella henselae str. Houston-1]
 gi|81647466|sp|Q6G1K8|MNME_BARHE RecName: Full=tRNA modification GTPase mnmE
 gi|49239126|emb|CAF28430.1| Thiophene and furan oxidizer [Bartonella henselae str. Houston-1]
          Length = 435

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 203/436 (46%), Positives = 277/436 (63%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFAVS+G LPS +++IRLSG     V   +C    P  R          DG  LD  L
Sbjct: 2   DTIFAVSSGLLPSGVAVIRLSGSHVVHVVTTLCG-CLPKARFMHYGNLTARDGSFLDSAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HGG AVVN  L+EL+     R+A PGEFSRRAF  GK+DL
Sbjct: 61  TVFFPAPHSFTGEDCAEFHLHGGKAVVNRFLDELSTFKGCRIAEPGEFSRRAFMEGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE LADLI +ETE QRRL++ G SG L++LY  W  KL  IR+FIEA+LDFS+E D+ 
Sbjct: 121 VQAEGLADLIEAETESQRRLAVMGTSGRLTTLYRDWRHKLMKIRAFIEAELDFSDEADIP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           N  S +V  D+  L   +  HI++G+   I+R+G+KIVI+G  N+GKSS+ N LA K VA
Sbjct: 181 NTVSDKVWKDVENLCISLREHIAEGERASILRDGFKIVIVGAPNSGKSSIMNRLAGKPVA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+  GTTRD L + L L G  V + DTAG RETD+ +E+ GI+     V +ADL++L+
Sbjct: 241 IVTEEAGTTRDALEVRLVLGGLPVFLIDTAGFRETDNKIEQLGIEVAKQHVRDADLVILV 300

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            ++ + KE+  P+ + +   +G K DLY    E +    S+ TG   +  + +++S    
Sbjct: 301 YDMQNPKEVYLPETSAEIWRVGNKFDLYEENKEPWLIQFSALTGLNFDHFMKELESFCLR 360

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +  ++    P+ KR L  L + V+ +E  S+N     L + AE+LR AS  LGKITG +D
Sbjct: 361 RVSEIGNLFPARKRQLQLLKEAVKEIEN-SVNYDSLDLSLRAEHLRRASDFLGKITGDID 419

Query: 425 VEQLLDIIFSKFCIGK 440
           VE LLDIIFS+FCIGK
Sbjct: 420 VEDLLDIIFSEFCIGK 435


>gi|163869379|ref|YP_001610635.1| tRNA modification GTPase TrmE [Bartonella tribocorum CIP 105476]
 gi|205829117|sp|A9IZY1|MNME_BART1 RecName: Full=tRNA modification GTPase mnmE
 gi|161019082|emb|CAK02640.1| tRNA modification GTPase [Bartonella tribocorum CIP 105476]
          Length = 435

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 196/436 (44%), Positives = 276/436 (63%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFAVS+G LPS +++IRLSGP    + + +C    P  R          DG  LD  L
Sbjct: 2   DTIFAVSSGLLPSGVAVIRLSGPHVVHIVKTLCG-CLPKARFMHYGNLIARDGSFLDSAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HGG AVVN  L+EL+     R+A  GEFSRRAF  GK+DL
Sbjct: 61  TVFFPAPHSFTGEDCAEFHLHGGKAVVNRFLDELSTFSGCRIAEAGEFSRRAFMEGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE LADLI +ETE QRRL++ G SG L++LY  W  KL  +R+FIEA+LDF++EED+ 
Sbjct: 121 VQAEGLADLIEAETESQRRLAVMGTSGHLTTLYRDWRHKLMKVRAFIEAELDFADEEDIP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +  S ++  D+  L   +  HI +G+   I+R+G KIVI G  N+GKSS+ N LA + VA
Sbjct: 181 DTISDKIWKDVEDLCTSLREHIREGERASILRDGLKIVIAGAPNSGKSSIMNRLAGRSVA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+  GTTRD L + L L G  + ++DTAG R+T++ +E+ GI+     V  ADL++L+
Sbjct: 241 IVTEEAGTTRDALEMRLVLGGLPIFLTDTAGFRKTENKIEQLGIEVAKQHVREADLVILV 300

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            +I + K++  P+ + +   +G K DLY      +    S+ TG   +  I K++S    
Sbjct: 301 YDIVNPKQVDLPETSAEIWRVGNKLDLYEKNDPCWSIQFSALTGLNFDCFIKKLESFCHR 360

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +  ++   +P+ KR L  L + V+ +E  SLN     L + AE+LR AS  LGKITG +D
Sbjct: 361 RASEVGNLVPARKRQLQLLKEAVKEIEN-SLNYHSLDLSLRAEHLRRASDFLGKITGDID 419

Query: 425 VEQLLDIIFSKFCIGK 440
           VE LLDIIFS+FC+GK
Sbjct: 420 VEDLLDIIFSEFCVGK 435


>gi|262273126|ref|ZP_06050943.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Grimontia hollisae
           CIP 101886]
 gi|262222882|gb|EEY74190.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Grimontia hollisae
           CIP 101886]
          Length = 454

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 159/458 (34%), Positives = 245/458 (53%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M H  +TI A +T      + IIR+SGP    V + +  +  P  R+A    F   +G  
Sbjct: 1   MTH-SDTIVAQATPPGRGGVGIIRVSGPKAKAVAKAVTGRDLPV-RRAEYLPFKDAEGNA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F +P SFTGED  E   HGG  +++ +++ + ++  +R A PGEFS RAF N
Sbjct: 59  LDQGIALYFQAPNSFTGEDVLELQGHGGPVIMDMLIKRIVEIDGVRTARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + +++ + G  SS     ++ L H+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAAKSALQSLQGAFSSKVNALVEALIHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  +V  D+  +   +         G I+R G K+VI G  NAGKSSL NAL+
Sbjct: 179 -EEIDFLSDGKVAGDLNNIITSLDEVRKAANQGAIMREGMKVVIAGRPNAGKSSLLNALS 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            K+ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD
Sbjct: 238 GKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWDEIAQAD 297

Query: 301 LILLLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLI 343
            +L +      +  S +EI        P N+    I  K+D+          ++     +
Sbjct: 298 RVLFMVDGTTTDATSPEEIWPEFIDRLPSNMGMTVIRNKADITGETLGICHASQPTLIRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           S+ TG G++ L   +K+ +            + +RHL  L    R+LE+     E     
Sbjct: 358 SAKTGAGVDALREHLKACM-GFSGAAEGGFMARRRHLEALDAAARHLEIGKDQLEGYMAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I+AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 417 EILAEELRIAQQHLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|169635754|emb|CAQ16331.1| t-RNA modification GTPase protein [Pseudomonas syringae]
          Length = 458

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 161/463 (34%), Positives = 248/463 (53%), Gaps = 28/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   ETI AV+T      + I+R+SGP    +      +++  PR A    F+G +  +
Sbjct: 1   MSVAAETIAAVATAQGRGGVGIVRISGPLA-SIAAKAFSERELKPRYAHYGPFYGENREV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCIQL-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLGMLDKVRQELSTVMREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTE----EYDHLISS 345
            +LL+ +  + +               P       I  K+DL          +  H+  S
Sbjct: 298 RVLLVVDATAPEADDPFALWPEFLQQRPDPAKVTLIRNKADLTGEDIRLQVCDDGHVTIS 357

Query: 346 FT------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNE 397
            +      G+GLE L + +K+ +    +    S  + +RHL  L      LE   A L  
Sbjct: 358 LSARSTDAGDGLELLRDHLKACM-GYEQTSESSFSARRRHLEALRHASDALEHGRAQLTL 416

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              G +++AE+LR A  SLG+ITG    + LL  IFS FCIGK
Sbjct: 417 AGAG-ELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 458


>gi|88798543|ref|ZP_01114127.1| tRNA modification GTPase [Reinekea sp. MED297]
 gi|88778643|gb|EAR09834.1| tRNA modification GTPase [Reinekea sp. MED297]
          Length = 455

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 156/459 (33%), Positives = 239/459 (52%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGR 59
           M    +TI A++T      + I+R+SG +   V E I K K+P PR A    F+    G 
Sbjct: 1   MIASNDTITAIATPPGRGGVGIVRVSGKAATAVAEKILK-KRPEPRYAHYGPFYHPTQGD 59

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+G+ + FP P SFTGED  E   HGG  ++  +LE +  +   RLA PGEFS RAF 
Sbjct: 60  VIDEGIALFFPGPNSFTGEDVLELQGHGGPVILELLLEAVCSL-GCRLARPGEFSERAFL 118

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N KIDL +AE++ADLI + +    R ++  + G+ S+   Q +++L  +R ++EA +DF 
Sbjct: 119 NDKIDLTQAEAIADLIDASSREAARSAVRSLQGDFSNAVHQLVEQLIQLRIYVEAAIDFP 178

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E E++   S  +V  D+  + + ++   +    G ++R+G  +VI G  NAGKSSL NAL
Sbjct: 179 E-EEIDFLSDGKVETDLRQVMSQLADVQATANQGSLMRDGMTVVIAGRPNAGKSSLLNAL 237

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           + ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ G++R + E+E A
Sbjct: 238 SGQERAIVTDIAGTTRDVLKEHIHIDGMPLHIIDTAGLRDAPDAVERIGVERAWAEIETA 297

Query: 300 DLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTE------EYDHL 342
           D ILL+ +      +             P+      I  K D                  
Sbjct: 298 DRILLMVDATDTDAVDPETIWPDFMHRLPERAQLTVIRNKIDQTGEAAGLNMDSAVPVIR 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CG 401
           +S+    G+  L + +K  L            + KRHL  L +    L+           
Sbjct: 358 LSAQNRAGVNHLRDHLKQ-LMGFEGNHESGFIARKRHLDALLRAAEALDNGLAQLLGPAA 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 GELLAEDLRVAQNALNEITGEFSPDDLLGRIFSSFCIGK 455


>gi|331017732|gb|EGH97788.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 456

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/461 (35%), Positives = 247/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  + I  +  P PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKTAQAIIGRM-PKPRFAHYGPFADESGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGVFSQRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLGILDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL     +  T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDSIALQTSADGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|212640677|ref|YP_002317197.1| tRNA modification GTPase TrmE [Anoxybacillus flavithermus WK1]
 gi|212562157|gb|ACJ35212.1| tRNA modification GTPase, TrmE [Anoxybacillus flavithermus WK1]
          Length = 464

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 152/465 (32%), Positives = 250/465 (53%), Gaps = 26/465 (5%)

Query: 1   MNH-EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL- 56
           MN  E +TI A+ST     AI+I+RLSG    ++ + +      K      S    +G  
Sbjct: 1   MNSVEFDTIAAISTPMGEGAIAIVRLSGDEAIKIVDQLFVGVGGKKLKDVPSHTIHYGHI 60

Query: 57  ----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
                   +++ ++ V  +P++FT ED  E + HGG+  VN +L+ L      RLA PGE
Sbjct: 61  VHPETKETIEEVMVTVMKAPKTFTREDVVEINCHGGLVSVNRVLQ-LVLAYGARLAQPGE 119

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NG+IDL +AE++ DLI ++T+    +++  M G LS L  +    +    + +
Sbjct: 120 FTKRAFLNGRIDLSQAEAVIDLIRAKTDRAMAVALNQMEGRLSKLIRRLRQTILETLAHV 179

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E ++D+ E +DV+  + + +L     +KN+I   +   + G+++R+G   VI+G  N GK
Sbjct: 180 EVNIDYPEYDDVEEMTHRLLLEKATEVKNEIERLLQTAQQGKVLRDGLATVIIGRPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N+LA ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+
Sbjct: 240 SSLLNSLAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLLDTAGIRETEDIVERIGVERS 299

Query: 293 FLEVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEE-------- 338
              ++ ADLILL+        +  ++     K +D I I  K+DL      +        
Sbjct: 300 RKVLKEADLILLVLNYNEPLTVEDEQLFEAVKGMDVIVIVNKTDLPKQIDMDRVKQLAQG 359

Query: 339 -YDHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL- 395
                 S     G+++L   I S+      +    +  S+ RH+  L+Q  + +E A   
Sbjct: 360 LPIITTSLLEDRGIDQLEEAIASLFFSGDVEARDLTYVSNSRHIALLTQAKKAIEEAIHG 419

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            E    +DI+  +L  A   LG+I G    E L+D +F++FC+GK
Sbjct: 420 IEAGMPIDIVQIDLTRAWELLGEIVGDTVHESLIDQLFAQFCLGK 464


>gi|113972266|ref|YP_736059.1| tRNA modification GTPase TrmE [Shewanella sp. MR-4]
 gi|123324470|sp|Q0HD65|MNME_SHESM RecName: Full=tRNA modification GTPase mnmE
 gi|113886950|gb|ABI41002.1| tRNA modification GTPase trmE [Shewanella sp. MR-4]
          Length = 453

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 255/455 (56%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P PR A    F    G+++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRISGDKATDVAMAVLG-HLPKPRYADYCDFKNASGQVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+
Sbjct: 61  GIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S    + +D++TH+R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++ N +  + + +S   +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIANALYKIIDKLSVVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSF 346
            + +  +   +             P N+    +  K+DL       TEE     + IS+ 
Sbjct: 300 FMVDGTTTDAVDPHDIWPDFIDRLPANLGVTVVRNKADLTGENLAMTEEKGYSVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++
Sbjct: 360 TGLGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALDVAASHLQLGKEQLEIYLAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|205829074|sp|A3M8Y8|MNME_ACIBT RecName: Full=tRNA modification GTPase mnmE
          Length = 454

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/459 (37%), Positives = 261/459 (56%), Gaps = 24/459 (5%)

Query: 1   MN--HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           MN  H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG
Sbjct: 1   MNNMHSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADG 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAF
Sbjct: 61  SIMDEGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GAIAAKAGEFSMRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           ENGK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL ++R  +EA +DF
Sbjct: 120 ENGKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIYLRLHVEAAIDF 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E E++   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NA
Sbjct: 180 PE-EEIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA  + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E 
Sbjct: 239 LAGVERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQ 298

Query: 299 ADLILLLKEINSKKEI---------SFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ADL+LL+ ++N   +             +    + IG K DL     E  D+       +
Sbjct: 299 ADLLLLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITV 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401
           S+    G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G
Sbjct: 359 SAKQEMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 -ELVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|323516075|gb|ADX90456.1| tRNA modification GTPase TrmE [Acinetobacter baumannii TCDC-AB0715]
          Length = 451

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/455 (36%), Positives = 259/455 (56%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 2   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARLAGFRKFYDADGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GAIAAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF E E
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPE-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 180 EIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFT 347
           LL+ ++N   +             +    + IG K DL     E  D+       +S+  
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
             G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|330937305|gb|EGH41313.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 456

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/461 (35%), Positives = 245/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKAAEAIIGRTL-KPRFAHYGPFVDDAGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VLN +   + ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLNMLDDARAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|317494662|ref|ZP_07953074.1| tRNA modification GTPase TrmE [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917264|gb|EFV38611.1| tRNA modification GTPase TrmE [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 454

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/456 (35%), Positives = 249/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A +T      + I+R+SG    +V   +   K P PR A    F   DG +LD
Sbjct: 2   SQSDTIVAQATPPGRGGVGILRISGRQAEEVAMALLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  MPN+R+A PGEFS RAF N K
Sbjct: 61  QGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILLMPNVRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R F+EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAVNSLQGAFSNRVNQLVEALTHLRIFVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  ++ +  ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNGVMGELQAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRV 299

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +   I             PK +    +  K+D+       S         +S+
Sbjct: 300 LFMVDGTTTDAIEPATIWPEFMARLPKTLPITVVRNKADVTGETLGLSEVNGYSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L + +K  +      +     + +RHL  L     +LE            ++
Sbjct: 360 RTGEGIDVLRDHLKQSM-GFTSNMEGGFLARRRHLQALETAAMHLEQGKEQLLSAYAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|229593496|ref|YP_002875615.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens SBW25]
 gi|229365362|emb|CAY53749.1| probable tRNA modification GTPase [Pseudomonas fluorescens SBW25]
          Length = 456

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/461 (35%), Positives = 247/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  +ETI AV+T      + I+R+SGP        I  ++   PR A    F   D  +
Sbjct: 1   MSAPRETIAAVATAQGRGGVGIVRISGPLASVAANAISGREL-KPRYAHYGPFLDADQSV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS +AF N
Sbjct: 60  LDEGLALYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQL-GCRLARPGEFSEQAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  +++++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLAMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRD+L   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            +LL+ +  + + +             P       I  K+DL     +  T    H+  S
Sbjct: 298 RVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKADLTGEAIAMETSADGHVTLS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSAKSAGEGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASAALEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A   LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|319779149|ref|YP_004130062.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Taylorella
           equigenitalis MCE9]
 gi|317109173|gb|ADU91919.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Taylorella
           equigenitalis MCE9]
          Length = 443

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/446 (36%), Positives = 252/446 (56%), Gaps = 13/446 (2%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
            ++TI A++T      I ++R+SG         +     P PR A+   FF  DG  +D 
Sbjct: 2   HEDTIAAIATAPGRGGIGVVRVSGQELAGFARALTNGLDPKPRIATYTDFFDDDGAAIDN 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP+P SFTGED  E   HGG  ++N +L+   ++   RLA PGEF++RAF N KI
Sbjct: 62  GLLLYFPAPHSFTGEDVLELQGHGGPVILNMVLKRCIEL-GARLAEPGEFTKRAFLNNKI 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AES+ADLI + +E   R+++  + G  S    + + KL ++R  +EA LDF E E+
Sbjct: 121 DLTQAESVADLIDATSEKAARMALRSLKGVFSDRIHELVSKLINLRMLVEATLDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +    + + L  +  ++  +   ISQ   G I+R G K+ ++G  N GKSSL NAL+ ++
Sbjct: 180 LDFLEAADALGQLNEIRKLLEGIISQANQGTIMREGLKVALIGMPNVGKSSLLNALSGEE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIVTDI GTTRDV+   + ++G  +   DTAG+RET+D+VE+ GIK++   +++AD+ L
Sbjct: 240 VAIVTDIAGTTRDVVKNFIHIDGVPIHFMDTAGLRETEDLVEQIGIKKSEKTLQDADVAL 299

Query: 304 LLKEINSK-----KEI--SFPKNIDFIFIGTKSDLYSTYT--EEYDHLISSFTGEGLEEL 354
           +L++   +     +E+    P+++  I+I  K DL       +     +S+ TG GL+ L
Sbjct: 300 ILQDPREEISHKLQEVLSRIPQSVKTIYIQNKIDLIDKQPAQDNNVIYLSAKTGAGLDLL 359

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
              +  +      +      +  RH+  LS+    LE+A       GLD+ AE+LRLA  
Sbjct: 360 KKALLEVA-GWEGESEGLFLARTRHMNALSEAKSQLEIAKEIAYS-GLDLFAEHLRLAQE 417

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            L  ITG    + LL  IF++FCIGK
Sbjct: 418 HLNTITGEFTADDLLGEIFTRFCIGK 443


>gi|215485156|ref|YP_002327397.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB307-0294]
 gi|301345950|ref|ZP_07226691.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB056]
 gi|301510087|ref|ZP_07235324.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB058]
 gi|301594675|ref|ZP_07239683.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB059]
 gi|332854708|ref|ZP_08435495.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6013150]
 gi|332865588|ref|ZP_08436428.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6013113]
 gi|213988539|gb|ACJ58838.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB307-0294]
 gi|332727865|gb|EGJ59267.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6013150]
 gi|332735240|gb|EGJ66317.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6013113]
          Length = 451

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 169/455 (37%), Positives = 259/455 (56%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 2   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDTDGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GAIAAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF E E
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPE-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 180 EIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSKKEI---------SFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFT 347
           LL+ ++N   +             +    + IG K DL     E  D+       +S+  
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
             G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVIFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|320539849|ref|ZP_08039508.1| GTP-binding protein with a role in modification of tRNA [Serratia
           symbiotica str. Tucson]
 gi|320030035|gb|EFW12055.1| GTP-binding protein with a role in modification of tRNA [Serratia
           symbiotica str. Tucson]
          Length = 454

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/456 (35%), Positives = 247/456 (54%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      I I+R+SG    +V   +   K P PR A    F  + G  LD
Sbjct: 2   STTDTIVAQATPPGRGGIGILRISGSKAKEVALALLG-KLPKPRYADFLPFRDVAGITLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP+P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K
Sbjct: 61  QGIALWFPAPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFINDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R +M  + G  S+   Q ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTRIYQLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +   + S   + + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAQLNGVMAALDSVRGEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRV 299

Query: 303 LLLKE-----INSKKEI------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +          EI        P+ +    +  K+D+       +         +S+
Sbjct: 300 LFMVDGTTTVATEPAEIWQEFTARLPQRLPITVVRNKADITGETLGITEVNGHSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L + +K  +      +     + +RHL  L Q  R+L             ++
Sbjct: 360 RTGEGIDLLRDHLKQSM-GFTSNMEGGFLARRRHLQALEQAARHLVQGKEQLVSAYAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA ++L KITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQLALSKITGEFSSDDLLGRIFSSFCIGK 454


>gi|238759577|ref|ZP_04620739.1| tRNA modification GTPase mnmE [Yersinia aldovae ATCC 35236]
 gi|238702236|gb|EEP94791.1| tRNA modification GTPase mnmE [Yersinia aldovae ATCC 35236]
          Length = 454

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 158/456 (34%), Positives = 242/456 (53%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      + I+R+SG +   V + +   K P PR A    F  +DG  LD
Sbjct: 2   STTDTIVAQATPPGRGGVGILRVSGRAAATVAQAVLG-KLPKPRYADYLPFKDVDGSTLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPELRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  ++    ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEGQLNGVMAELEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAGDEVERIGIERAWNEIEQADRV 299

Query: 303 LLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  +                 P  +    +  K+D+       +         +S+
Sbjct: 300 LFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K +             +  RHL  L    ++L             ++
Sbjct: 360 RTGEGIDLLRNHLK-LSMGFTSNTEGGFLARSRHLQALEAAAQHLVQGHEQLVSAYAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|330976397|gb|EGH76454.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 456

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/461 (35%), Positives = 246/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKAAEAIIGRTL-KPRFAHYGPFVDDAGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEAISAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|256848511|ref|ZP_05553953.1| tRNA modification GTPase TrmE [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714778|gb|EEU29757.1| tRNA modification GTPase TrmE [Lactobacillus coleohominis
           101-4-CHN]
          Length = 462

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 147/462 (31%), Positives = 248/462 (53%), Gaps = 25/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
           N E +TI A+ST      ISIIR+SG     V + + K K    + AS    +G      
Sbjct: 3   NSEFDTITAISTPVGEGGISIIRVSGEEAIPVVKKLFKGKD-LAKVASHTINYGHIIDPQ 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ ++ V  +P+++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 62  TNQEVDEVMVSVMRAPKTYTKEDVVEINCHGGLLATNRILQ-LTIGAGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+   ++++  + G LS L       +  + + +E ++
Sbjct: 121 AFLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGNLSHLIKHLRKDILDVLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  +SK +    + ++  I   +   K G+++R+G    I+G  N GKSSL 
Sbjct: 181 DYPEYDAVEEMTSKLLREKAIEIRQRIEGLLKTAKQGKVLRDGLATAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  +D AIVT++ GTTRDV+   +++    +K+ DTAGIR TDD VEK G++R+   +
Sbjct: 241 NSLLHEDKAIVTNVAGTTRDVIEEYVNVNDVPLKLIDTAGIRHTDDTVEKIGVERSRQAI 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTE---------EYDH 341
           + ADLILLL + +       ++ I+   N   I I  KSDL +   +         +   
Sbjct: 301 DTADLILLLIDSSQPLTKEDQQLIAQTANKPRIIIFNKSDLPTKVDQDKLQALVDGDKVI 360

Query: 342 LISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEK 398
             S    EG++EL   I  +  N+         + ++ RH+  L Q  + L ++    + 
Sbjct: 361 TASMTKHEGIDELSAAISHLFFNEGIESNQNNVMVTNARHIGLLRQADQALGDVLKGLDD 420

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++  A   LG+ITG    ++LLD +FS+FC+GK
Sbjct: 421 GMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK 462


>gi|331702698|ref|YP_004399657.1| tRNA modification GTPase mnmE [Lactobacillus buchneri NRRL B-30929]
 gi|329130041|gb|AEB74594.1| tRNA modification GTPase mnmE [Lactobacillus buchneri NRRL B-30929]
          Length = 464

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 149/462 (32%), Positives = 242/462 (52%), Gaps = 25/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
             E +TI A+ST      ISIIR+SG     V + + + K    + AS    +G      
Sbjct: 5   TTEFDTIAAISTPPGEGGISIIRISGEEALDVAKKLYRGKD-LDKVASNTINYGHIIDPD 63

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
               +D+ +L V  +P ++T ED  E + HGGI   N IL+ LA     R+A PGEF++R
Sbjct: 64  TNEEVDEVMLSVMRAPHTYTEEDIVEINCHGGIVATNRILQ-LALSHGARMAEPGEFTKR 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL ++E++ DLI ++T+   + ++  + G LS L       +  + + +E ++
Sbjct: 123 AFLNGRIDLSQSEAVMDLIEAKTDRSMKAAINQLDGNLSHLIKHLRQDILDVLAQVEVNI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +SK +      +   I   +   K G+I+R G    I+G  N GKSSL 
Sbjct: 183 DYPEYDDVETMTSKLLREKATDVHARIVQLLKTAKQGKILREGLATSIIGRPNVGKSSLL 242

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTD+PGTTRDVL   +++ G  +K+ DTAGIR+T D VEK G+ R+   +
Sbjct: 243 NNLLHEDKAIVTDVPGTTRDVLEEYVNVHGVPLKLVDTAGIRDTTDKVEKIGVDRSRKAI 302

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------H 341
            +ADL+LL+   +       KK +S  ++   I I  K+DL +   ++            
Sbjct: 303 NSADLVLLVLNASEPLTDEDKKLLSATQDKQRIIILNKTDLPTKIDQDQIKSLADGQNVI 362

Query: 342 LISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             S+   +GL +L   I  +  ++         + ++ RH+  L+Q  + LE       D
Sbjct: 363 STSAIKADGLTQLEELIAKMFFDEGIESSQNDIMVTNARHIGLLNQAKQALEDVVKGLDD 422

Query: 400 -CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+ITG    ++L+D +FS+FC+GK
Sbjct: 423 GMPVDLVQIDMTRCWDFLGEITGDSYQDELIDQLFSQFCLGK 464


>gi|222153198|ref|YP_002562375.1| tRNA modification GTPase TrmE [Streptococcus uberis 0140J]
 gi|222114011|emb|CAR42339.1| tRNA modification GTPase TrmE [Streptococcus uberis 0140J]
          Length = 458

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 145/458 (31%), Positives = 247/458 (53%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + K K      AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTEALAIAKKVFKGKD-LEAVASHTINYGHILDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ILD+ ++ V   P++FT ED  E + HGGIAV N IL+ L K    R+A PGEF++
Sbjct: 62  EKNEILDEVMVTVMKEPKTFTREDVVEINTHGGIAVTNEILQLLIK-NGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G L  L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLKELINSTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +N +   +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALMREKTQEFQNLLEQLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDDIVEK G++R+   
Sbjct: 241 LNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKA 300

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD----HLISS 345
           +  ADL+LL+   +       +  +   K  + I +  K+DL     ++        IS 
Sbjct: 301 LNEADLVLLVLNASESLTEQDRVLLDLSKESNRIILLNKTDLPQAIEKDQIPEDYIEISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              E ++++ ++I  +        +   +  S+ RH+  + Q V+ L+  +   E    +
Sbjct: 361 LKNENIDQIEDRINDLFFENAGLVEQDATYLSNARHISLIEQAVQSLQAVNEGLEMGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|301154697|emb|CBW14160.1| GTPase [Haemophilus parainfluenzae T3T1]
          Length = 452

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 166/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + +   K P PR A    F   DG +LD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPRAVEVAQAVLG-KCPKPRMADYLPFKDADGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQLDGVRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEAKLREIINQLDLVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST---YTEEYD---HLISSFT 347
           + + +                  P N+    +  K DL        EE       +S+ T
Sbjct: 300 MLDSSDPDSQNIEKVRSEFLSKLPNNMPVTIVRNKVDLSGEAVGLKEENGTTTIHLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HQGVDLLREHLKQAMGFQTG-MEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL   +L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQANLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|262281557|ref|ZP_06059336.1| tRNA modification GTPase mnmE [Acinetobacter calcoaceticus RUH2202]
 gi|262257016|gb|EEY75755.1| tRNA modification GTPase mnmE [Acinetobacter calcoaceticus RUH2202]
          Length = 454

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/458 (36%), Positives = 258/458 (56%), Gaps = 22/458 (4%)

Query: 1   MNH--EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           MN+   + TI A++T      + +IRLSGP  +++ + + +K  P  R A  R F+ +DG
Sbjct: 1   MNNMQSQTTIAAIATPPGRGGVGVIRLSGPKAYEIAQNLTQKNLPEARMAGFRKFYDVDG 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAF
Sbjct: 61  SIMDEGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GAIAAKAGEFSMRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           ENGK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF
Sbjct: 120 ENGKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDF 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E E++   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NA
Sbjct: 180 PE-EEIDFLADGKILALLENVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA  + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E 
Sbjct: 239 LAGVERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQ 298

Query: 299 ADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ADL+LL+ ++N   +             +    + IG K DL     E  D        +
Sbjct: 299 ADLLLLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQLAEISDFQGFRHITV 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGL 402
           S+    G++ L+  I +     F     +  +  RHL  + +T  YL  A          
Sbjct: 359 SAKQEMGVQGLVEAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLSEAHEQLVVFNAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 ELVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|228477467|ref|ZP_04062103.1| tRNA modification GTPase TrmE [Streptococcus salivarius SK126]
 gi|228250902|gb|EEK10090.1| tRNA modification GTPase TrmE [Streptococcus salivarius SK126]
          Length = 456

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 142/456 (31%), Positives = 247/456 (54%), Gaps = 18/456 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI I+RLSG     +   + K K      AS    +G    +
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDAVAIANKVFKGKN-LETVASHTINYGHIVEN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ ++ V  +P++FT ED  E + HGG+AV N IL+ L +    R+A PGEF++RA
Sbjct: 62  DETIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIRS-GARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G L  L      ++ +  + +E ++D
Sbjct: 121 FLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++  V       +  + + ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 181 YPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDD+VEK G++R+   +E
Sbjct: 241 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALE 300

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            ADL+LL+   +       +  +   KN + I +  K+DL          E    IS   
Sbjct: 301 EADLVLLVLNSSEPLTEQDRTLLEISKNSNRIILLNKTDLPQAIQMEELPEDVIPISVLK 360

Query: 348 GEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDI 404
            E ++++ ++I  +  +     +   +  S+ RH+  + + +  LE      E    +D+
Sbjct: 361 NENIDKIEDRINQLFFDNAGLVEKDATYLSNARHISLIEKALESLEAVKQGLELGMPVDL 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456


>gi|193078405|gb|ABO13382.2| tRNA modification GTPase [Acinetobacter baumannii ATCC 17978]
          Length = 451

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/455 (36%), Positives = 259/455 (56%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG I+D
Sbjct: 2   HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GAIAAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL ++R  +EA +DF E E
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIYLRLHVEAAIDFPE-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 180 EIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSKKEI---------SFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFT 347
           LL+ ++N   +             +    + IG K DL     E  D+       +S+  
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
             G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|224498350|ref|ZP_03666699.1| tRNA modification GTPase TrmE [Listeria monocytogenes Finland 1988]
          Length = 457

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 151/457 (33%), Positives = 245/457 (53%), Gaps = 21/457 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSDAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ +  V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMATVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D+ E
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L 
Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD
Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300

Query: 301 LILLLK----EINSKKEISF--PKNIDFIFIGTKSDLYSTYT---------EEYDHLISS 345
            ILL+     E+ ++ E  F      +++ +  K+DL +            E      S 
Sbjct: 301 FILLVLNQNEELTAEDEALFEAAAGHNYVVVLNKTDLETKLDIEKVREIAGENPIVATSL 360

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLD 403
              EGLE L   IK++           +  S+ RH+  L Q +  L   +   +    +D
Sbjct: 361 VNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALDALNAVTTGIQLGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 421 IVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457


>gi|229542320|ref|ZP_04431380.1| tRNA modification GTPase TrmE [Bacillus coagulans 36D1]
 gi|229326740|gb|EEN92415.1| tRNA modification GTPase TrmE [Bacillus coagulans 36D1]
          Length = 461

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 153/461 (33%), Positives = 251/461 (54%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL----- 56
           E +TI A+ST     AISI+RLSG +   +   +      K      S    +G      
Sbjct: 2   EMDTIAAISTPMGEGAISIVRLSGENAIAIANRLFAGVGGKKLVDVPSHTIHYGKIVDPD 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G  +++ ++ V  +P++FT ED  E + HGG+  VN +L+ L      RLA PGEF++R
Sbjct: 62  TGETVEEAMVSVMKAPKTFTREDVVEINCHGGLVAVNRVLQ-LVLKNGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G LS L  +   ++  + + IE ++
Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDKAMNVAIGQMEGRLSKLVKKLRQEILEVVAHIEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  + + +     ++KN+I   +     G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTHRMLKEKAQYIKNEIEKLLRTAHQGKILREGLSTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NSLVQENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGVERSRKAL 300

Query: 297 ENADLILLLK----EINSKKEISFP--KNIDFIFIGTKSDLYSTYTEE---------YDH 341
           + ADLILL+      ++ + E  F   + +D I I  K DL      E            
Sbjct: 301 KEADLILLVINSSEPLSPEDEALFEAVEGMDVIVILNKWDLPHQVEMESVRELAQGAKIL 360

Query: 342 LISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKD 399
             S  T EG+E+L + I ++    + +    +  S+ RH+  L+Q +  ++      + +
Sbjct: 361 TTSLVTEEGMEKLEDAIAAMYFEGQMETGDLTYVSNSRHIALLNQALEAIQDVQNGIQSN 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DII  +L      LG+I G    E LL+ +FS+FC+GK
Sbjct: 421 TPIDIIQIDLTRTWDLLGEIIGDTVQESLLNQLFSQFCLGK 461


>gi|89074711|ref|ZP_01161169.1| tRNA modification GTPase [Photobacterium sp. SKA34]
 gi|89049475|gb|EAR55036.1| tRNA modification GTPase [Photobacterium sp. SKA34]
          Length = 455

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 244/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      + IIR+SGP   +V   +  ++    R A    F   DG  
Sbjct: 1   MNQHIDTIVAQATPPGRGGVGIIRVSGPKAKEVALAVAGRELKT-RYAEYLPFKNEDGTA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F  P SFTGED  E   HGG  +++ ++  + K+  +R A PGEFS RAF N
Sbjct: 60  LDQGIALFFKGPNSFTGEDVLELQGHGGPVLMDMMIRRILKIDGIRAARPGEFSERAFMN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + + + + G  S+   + ++ L H+R F+EA +DF E
Sbjct: 120 DKLDLAQAEAIADLIDASSEEAAKSAFKSLQGAFSTKVNELVEALIHLRIFVEAAIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  +V  D+  + + +++   +   G I+R G K+VI G  NAGKSSL NAL+
Sbjct: 180 -EEIDFLSDGKVGGDLNGIIDRLNAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALS 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            KD AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+ +AD
Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWDEIAHAD 298

Query: 301 LILLLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYSTYT------EEYDHLI 343
            +L +      +    KEI        P ++    I  K++L    T            +
Sbjct: 299 RVLFMVDGTTTDATDPKEIWPDFIERLPADMGLTVIRNKAELTGEQTGICHANNPTLIRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402
           S+ TG+G++ L   +K  +            + +RHL  L +   +L +     +     
Sbjct: 359 SARTGDGVDALREHLKQCM-GFSGTTEGGFMARRRHLDALERAAEHLAIGKEQLEGFMAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I+AE LRLA   L +ITG    + LL  IF+ FCIGK
Sbjct: 418 EILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|330964186|gb|EGH64446.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 456

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/461 (35%), Positives = 247/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  + I  +  P PR A    F    G++
Sbjct: 1   MNVPRETIAAITTAQGRGGVGIVRVSGPLAGKTAQAITGRM-PKPRFAHYGPFADESGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGVFSLRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLGMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL     +  T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDSIALQTSADGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|302185835|ref|ZP_07262508.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. syringae
           642]
          Length = 456

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/461 (35%), Positives = 246/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLASKAAEAIIGRTL-KPRFAHYGPFVDDAGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE+++DLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAISDLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL+ +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLSMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDRVDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|260553777|ref|ZP_05826047.1| tRNA modification GTPase mnmE [Acinetobacter sp. RUH2624]
 gi|260405081|gb|EEW98581.1| tRNA modification GTPase mnmE [Acinetobacter sp. RUH2624]
          Length = 454

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 169/459 (36%), Positives = 261/459 (56%), Gaps = 24/459 (5%)

Query: 1   MNH--EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           MN+   + TI A++T      + +IRLSGP  + + + + +K  P  R A  R F+  DG
Sbjct: 1   MNNMQSQTTIAAIATPPGRGGVGVIRLSGPKAYDMAQKLTQKNLPEARMAGFRKFYDADG 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAF
Sbjct: 61  SIMDEGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GAIAAKAGEFSMRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           ENGK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF
Sbjct: 120 ENGKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDF 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E E++   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NA
Sbjct: 180 PE-EEIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA  + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VEKEGI+R   E+E 
Sbjct: 239 LAGVERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQ 298

Query: 299 ADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ADL+LL+ ++N   +             +    + IG K DL     E  D+       +
Sbjct: 299 ADLLLLVYDLNQGDDPLQLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEIGDYQGFRHITV 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401
           S+    G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G
Sbjct: 359 SAKQEMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 -ELVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|330447275|ref|ZP_08310925.1| tRNA modification GTPase TrmE [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491466|dbj|GAA05422.1| tRNA modification GTPase TrmE [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 455

 Score =  438 bits (1126), Expect = e-121,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 243/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      + IIR+SGP   +V   +  ++    R A    F   DG  
Sbjct: 1   MNQHIDTIVAQATPPGRGGVGIIRVSGPKAKEVALAVAGRELKT-RYAEYLPFKNEDGIA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F  P SFTGED  E   HGG  +++ ++  + K+  +R A PGEFS RAF N
Sbjct: 60  LDQGIALFFKGPNSFTGEDVLELQGHGGPVLMDMMIRRILKIDGIRAARPGEFSERAFMN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + + + + G  S+     ++ L H+R ++EA +DF E
Sbjct: 120 DKLDLAQAEAIADLIDASSEEAAKSAFKSLQGAFSTKVNDLVEALIHLRIYVEAAIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  +V  D+  +   ++    +   G I+R G K+VI G  NAGKSSL NAL+
Sbjct: 180 -EEIDFLSDGKVSGDLNGIIERLNDVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALS 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            KD AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E+AD
Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWDEIEHAD 298

Query: 301 LILLLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYSTYT------EEYDHLI 343
            +L +      +    KEI        P ++    I  K++L    T            +
Sbjct: 299 RVLFMVDSTTTDATDPKEIWPDFIERLPADMGLTVIRNKAELTGEQTGICHANNPTLIRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402
           S+ TG+G++ L   +K  +            + +RHL  L +   +L++     +     
Sbjct: 359 SARTGDGVDALREHLKQCM-GFSGTTEGGFMARRRHLDALERAAEHLDIGKEQLEGFMAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I+AE LRLA   L +ITG    + LL  IF+ FCIGK
Sbjct: 418 EILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|145301203|ref|YP_001144044.1| tRNA modification GTPase TrmE [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|166200467|sp|A4STS4|MNME_AERS4 RecName: Full=tRNA modification GTPase mnmE
 gi|142853975|gb|ABO92296.1| tRNA modification GTPase TrmE [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 453

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 167/455 (36%), Positives = 248/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + I+R+SGP+  QV E I   K P  R A    F    G+ LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIVRVSGPAAEQVAE-IVLGKLPRVRYAEYLPFKDEQGQPLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ ++F +P SFTGED  E   HGG  +++ ++  + ++  LR A PGEFS RAF N K+
Sbjct: 61  GIALLFKAPNSFTGEDVLELQGHGGPVIMDMLVRRILQIKGLRPARPGEFSERAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R +M  + G+ SS   Q ++ L  +R ++EA +DF + E+
Sbjct: 121 DLAQAEAIADLIEASSEQAARSAMHSLQGQFSSKIQQLVESLIRLRIYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  +V  D+  +  ++    S+ K G ++R G K+VI G  NAGKSSL NALA ++
Sbjct: 180 IDFLSDGKVAGDLYAIMAELDGVRSEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGRE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+E AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTLDKVEQIGIERAWAEIEQADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSF 346
            + +  +   I             PK+I    +  K+DL       S       + IS+ 
Sbjct: 300 FMVDGTTTDAIDPREIWPEFVDRLPKDIGLTVVRNKADLTGEDLAPSQELGHAVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           T  GL  L   +K+ +  +         + +RHL  L +    L +A    E     +++
Sbjct: 360 TELGLPALREHLKACMGFQ-GNTEGGFMARRRHLDALERAAERLLVAKDQLEIYVAGELV 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453


>gi|254472335|ref|ZP_05085735.1| tRNA modification GTPase TrmE [Pseudovibrio sp. JE062]
 gi|211958618|gb|EEA93818.1| tRNA modification GTPase TrmE [Pseudovibrio sp. JE062]
          Length = 449

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 189/450 (42%), Positives = 270/450 (60%), Gaps = 11/450 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGR 59
           MN ++ETI+AVS+GALPS +++IRLSGP    +   + K K P  R++ L+  +   DG 
Sbjct: 1   MNTQQETIYAVSSGALPSGVAVIRLSGPQSGPILRTLIKGKFPVSRESCLKKLWDPVDGS 60

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD  L++ F  P SFTGED+ E H HGG AVV  +L  L+     R A  GEF+RRAF 
Sbjct: 61  VLDHALILWFEGPGSFTGEDTVELHCHGGRAVVAAVLRALSTFEKTRPAEQGEFTRRAFH 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N K+DL E E LADLI +ET+ QRR +   M G L  LY QW + L   R+ IEA+LDFS
Sbjct: 121 NNKLDLTEVEGLADLIDAETDAQRRQAQRQMDGALGDLYSQWRETLIRSRAMIEAELDFS 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +E+D+ +  + E+  ++  L++ I +H+S  + GE +R+G ++V+LG  NAGKSSL N L
Sbjct: 181 DEDDIPDSVADEIWVELAKLRDQIIAHLSDARRGERLRSGLQVVLLGPPNAGKSSLMNKL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A++DVAIVT   GTTRDVL + LDL GY V + DTAGIRE+  ++EKEGI+R  +  E A
Sbjct: 241 AQRDVAIVTPEAGTTRDVLEVHLDLGGYPVTLIDTAGIRESAGMIEKEGIRRALVHAEKA 300

Query: 300 DLILLL----KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-----DHLISSFTGEG 350
           DLIL       E     E       +   + TKSDL      +      +  +S     G
Sbjct: 301 DLILWTHAPNVEAEELPESLLQSGAEIWRLNTKSDLGPIADHDSFETTEEINVSVREEGG 360

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           +  L++ ++S        +   + + +RH  HL+Q V  L+   +  +   +++  E+LR
Sbjct: 361 MNTLLSSLESFAERNIGLIENPLITRERHRSHLTQCVEDLDRG-IQAEGFPIELRGEDLR 419

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A+  LG+ITG +DVE LLD+IF  FC+GK
Sbjct: 420 RAADQLGRITGRIDVEDLLDVIFRDFCVGK 449


>gi|152998479|ref|YP_001343314.1| tRNA modification GTPase TrmE [Marinomonas sp. MWYL1]
 gi|205415779|sp|A6W3V0|MNME_MARMS RecName: Full=tRNA modification GTPase mnmE
 gi|150839403|gb|ABR73379.1| tRNA modification GTPase TrmE [Marinomonas sp. MWYL1]
          Length = 459

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 153/456 (33%), Positives = 241/456 (52%), Gaps = 22/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            +++TI A +T      + IIRLSGP    + + I   + P PR A    F       LD
Sbjct: 8   TDQDTIAAQATAPGRGGVGIIRLSGPKSLAIAKQIIGFE-PKPRYAHYVPFKTTGQEQLD 66

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L     +   RLA PGEFS RAF N K
Sbjct: 67  EGIALYFPGPNSFTGEDVFELQGHGGPVIMDMLLSHCVAL-GARLARPGEFSERAFMNDK 125

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI S +E   + ++  + G  S    + ++ L H+R ++EA +DF E E
Sbjct: 126 MDLTQAEAIADLIDSTSEQAAKCALRSLQGAFSKRVDELVEALIHLRIYVEAAIDFPE-E 184

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++      +V  ++  ++  ++  + +   G +IR G  +VI G  NAGKSSL NAL+ K
Sbjct: 185 EIDFIGDGKVAAELAGIQAKLAEVLKEANQGALIREGMNVVIAGRPNAGKSSLLNALSGK 244

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT+I GTTRDVL   + L+G  + I DTAG+R++ D VE+ GI+R + E+  AD I
Sbjct: 245 ESAIVTNIEGTTRDVLREHIHLDGMPLHIIDTAGLRDSPDEVERIGIQRAWDEISKADRI 304

Query: 303 LLLKEINSKKEISFPKNID-----------FIFIGTKSDL------YSTYTEEYDHLISS 345
           L++ +  S       +                 +  K DL        T +      +S+
Sbjct: 305 LMMVDSQSIDSKDPNEIWPEFMEKLGDTKHLTLVRNKVDLTKEGTGIETVSGVPVVSLSA 364

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DI 404
            TGEG+ +L   +K+++            + +RH+  L++  R+L+  +      G  ++
Sbjct: 365 KTGEGVTDLTEHLKAVMGFD-STTEGGFIARRRHIEALNKANRFLDAGNEQLHGYGAGEL 423

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE+L+ A  +L +ITG    + LL  IF  FCIGK
Sbjct: 424 LAEDLKEAQQALSEITGAFTSDDLLGRIFGSFCIGK 459


>gi|322381368|ref|ZP_08055371.1| tRNA modification GTPase TrmE-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154944|gb|EFX47215.1| tRNA modification GTPase TrmE-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 460

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 159/457 (34%), Positives = 248/457 (54%), Gaps = 23/457 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRI 60
           KETI A+ST      IS+IR+SG     +   I K + P     +    +G     DG  
Sbjct: 6   KETIAAISTPLGEGGISVIRVSGDESIAIVNKIFKSRTPLTEAETHTVHYGHIVDTDGHK 65

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ L+ V  +P SFT ED  E   HGGI  V  +L+ L      RLA PGEF++RAF N
Sbjct: 66  VEEVLVTVMRAPRSFTTEDVVEVSCHGGIVSVKKVLD-LLLDQGARLAEPGEFTKRAFLN 124

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++++   +++++ + G LS    +   +L  + + +E ++D+ E
Sbjct: 125 GRIDLTQAEAVIDLIRAKSDRAFQIALKQVDGILSKRIRKIRQELVELMAHVEVNIDYPE 184

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             DV   +   +L+       +I   +   + G+I+R G    I+G  N GKSSL NALA
Sbjct: 185 H-DVAEMTHALILDKCNKGIQEIDFLLHTAQQGKILREGIVTAIVGKPNVGKSSLMNALA 243

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDIPGTTRDV+   +++ G  +K+ DTAGIRET D+VE+ G++R+   +  AD
Sbjct: 244 QENRAIVTDIPGTTRDVIEEYVNVGGIPLKLLDTAGIRETTDVVEQIGVERSRSALSEAD 303

Query: 301 LILLLK------EINSKKEISFPKNIDFIFIGTKSDLY---------STYTEEYDHLISS 345
           LILL+       E    + +S  K+   + I  K+DL          + Y +E    +S 
Sbjct: 304 LILLVLNSSEPLEEEELRLLSQLKDRQTLIILNKTDLPLGLHLEDICNLYPKEQVVKLSL 363

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
              +GLE+L   I  +    + +    +  S+ RH++ L Q  + L+ A   NE    +D
Sbjct: 364 IQQKGLEDLEKAISGLFFEGRLESGDMNYVSNVRHIHLLKQAKQSLQDAIEANENGVPID 423

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I  +LR A   LG+I G    E L+D IFS+FC+GK
Sbjct: 424 MIQIDLRAAWEQLGEIIGDSVAESLIDQIFSQFCLGK 460


>gi|326797440|ref|YP_004315260.1| tRNA modification GTPase mnmE [Marinomonas mediterranea MMB-1]
 gi|326548204|gb|ADZ93424.1| tRNA modification GTPase mnmE [Marinomonas mediterranea MMB-1]
          Length = 459

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 152/455 (33%), Positives = 241/455 (52%), Gaps = 22/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           +++TI A +T      + IIRLSGP    + + I     P PR A    F   +   LD 
Sbjct: 9   DQDTIAAQATAPGRGGVGIIRLSGPKSLDIAKAIIGF-DPKPRYAHYVPFKDDNDEQLDM 67

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HGG  +++ ++     +   RLA PGEFS RAF N K+
Sbjct: 68  GIALYFPGPNSFTGEDVFELQGHGGPVILDMLMTRCTAL-GARLARPGEFSERAFLNDKM 126

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI S +E   + ++  + G  S    + ++ L H+R ++EA +DF E E+
Sbjct: 127 DLTQAEAIADLIDSSSEQAAKCALRSLQGAFSKRVTELVEALIHLRIYVEAAIDFPE-EE 185

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +      +V  ++  ++  +++ + +   G ++R G  +VI G  NAGKSSL N L+ KD
Sbjct: 186 IDFIGDGKVAAELEGIQIKLNAVLKEANQGALLREGMNVVIAGRPNAGKSSLLNTLSGKD 245

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R++ D VE+ GI+R + E+  AD IL
Sbjct: 246 SAIVTNIAGTTRDVLREHIHLDGMPLHIIDTAGLRDSPDEVEQIGIQRAWDEIHKADRIL 305

Query: 304 LLKEIN-----SKKEI------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSF 346
           L+ +         +EI        P       +  K DL        +  +     +S+ 
Sbjct: 306 LMVDSQTVGSKDPEEIWPEFVAQLPSRDKLTLVRNKVDLTKETTGLESINDLPILSLSAK 365

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DII 405
           TG+G++ L   +K+++  +         + +RH+  L++T  +L          G  +++
Sbjct: 366 TGQGIDALSQHLKAVMGFE-STTEGGFIARRRHIEALNKTNDFLRSGHEQLHGFGAGELL 424

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+L+ A  +L +ITG    + LL  IF  FCIGK
Sbjct: 425 AEDLKEAQQALSEITGEFTSDDLLGRIFGSFCIGK 459


>gi|325123489|gb|ADY83012.1| tRNA modification GTPase [Acinetobacter calcoaceticus PHEA-2]
          Length = 451

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 169/455 (37%), Positives = 259/455 (56%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
             + TI A++T      + +IRLSGP  +++ + + +K  P  R A  R F+  DG I+D
Sbjct: 2   QSQTTIAAIATPPGRGGVGVIRLSGPKAYEIAQNLTQKNLPEARMAGFRKFYDADGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPHSFTGEDVVEIQGHGGPVIQNALLGRLFEL-GAIAAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF E E
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPE-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 180 EIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFT 347
           LL+ ++N   +             +    + IG K DL S   E  D        +S+  
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTSQLAELSDFQGFRHITVSAKQ 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
             G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLSEAREQLVVFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|149182297|ref|ZP_01860776.1| tRNA modification GTPase [Bacillus sp. SG-1]
 gi|148849989|gb|EDL64160.1| tRNA modification GTPase [Bacillus sp. SG-1]
          Length = 461

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 150/461 (32%), Positives = 249/461 (54%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK--ASLRYFFGL----- 56
           E +TI A+ST     AI+I+RLSG   F + + + K  K       AS    +G      
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDQAFDIADKVFKGIKGNSVHEFASHTINYGHIVDSS 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G ++++ ++ V   P++FT ED  E + HGG+  VN +L+ + K    RLA PGEF++R
Sbjct: 62  TGAVVEEVMMSVMKGPKTFTREDIIEINCHGGLVSVNKVLQLVLK-NGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    +++  M G LS L  +   ++    + +E ++
Sbjct: 121 AFLNGRVDLSQAEAVMDLIRAKTDRAMNVALNQMEGRLSKLIRKLRQEILETLAHVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +   +L    +++++I   +   + G+I+R G   VI+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTHGVLLEKSKYVRDEIEKLLRTSEQGKILREGLSTVIVGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY---------TEEYDH 341
           + ADLILL+   +       ++     + +D I I  K+DL              E    
Sbjct: 301 KEADLILLVLNYSDEFTYEDEQLFKAVEGMDVIVIVNKTDLPQKIDMDRVKELAAEHAVV 360

Query: 342 LISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
             S    +G++EL   I ++      +    +  S+ RH+  L+Q    ++ A    E  
Sbjct: 361 TTSLLEEQGIDELEEAISTLFFAGSLEAGDMTYVSNSRHIALLNQAHGAIDEAINGVEMG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DI   +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 421 TPIDIAQIDLTRTWELLGEIIGESVHESLIDQLFSQFCLGK 461


>gi|325275324|ref|ZP_08141277.1| tRNA modification GTPase TrmE [Pseudomonas sp. TJI-51]
 gi|324099572|gb|EGB97465.1| tRNA modification GTPase TrmE [Pseudomonas sp. TJI-51]
          Length = 456

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 162/461 (35%), Positives = 246/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+RLSGP   +  + I  +    PR A    F   DG +
Sbjct: 1   MNIVRETIAAIATAQGRGGVGIVRLSGPLAAKAGQLITGRTL-TPRHAHYGPFRDEDGLV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQV-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + GE S       + L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSKRVHGLTEALIALRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL+ +  ++ ++S+   +   G ++R+G  +VI G  NAGKSSL N LA
Sbjct: 179 -EEIDFLADGHVLSMLDTVRRELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSLLNQLA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRD+L   + ++G  + + DTAG+R TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRATDDHVEKIGVERALKAIGEAD 297

Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFT 347
            +LL+ +  + +               P       I  K+DL       E+ D    + T
Sbjct: 298 RVLLVVDSTAPEASDPFALWPEFLDQRPDPAKVTLIRNKADLSGERVGLEQSDDGHVTIT 357

Query: 348 ------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
                   GL+ L + +K+ +    +       + +RHL  L Q   +LE   A L    
Sbjct: 358 LSAKGNDAGLQLLRDHLKACM-GYEQTAESGFSARRRHLEALRQASEHLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQHALGEITGALSSDDLLGRIFSSFCIGK 456


>gi|319651095|ref|ZP_08005229.1| TRNA modification GTPase [Bacillus sp. 2_A_57_CT2]
 gi|317397265|gb|EFV77969.1| TRNA modification GTPase [Bacillus sp. 2_A_57_CT2]
          Length = 461

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 154/461 (33%), Positives = 253/461 (54%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL----- 56
           E +TI A+ST     AI+I+RLSG   F++ + + +    K     AS    +G      
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDQAFEIADRLFRGVGGKRLKDVASHTIHYGHIMDPK 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G+I ++ ++     P++FT ED  E + HGG+  VN +L+ L      RLA PGEF++R
Sbjct: 62  TGQIAEEVMVSAMKGPKTFTKEDVIEINCHGGLVSVNRVLQ-LLLNNGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G LS L  +   ++  I + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNMALGQMEGRLSKLIQKLRQEILEILAHVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  + + ++    ++K +I   +   + G+I+R G   VI+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTHQMLMEKASYVKQEIEKLLQTSQQGKILREGLSTVIVGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++++   +
Sbjct: 241 NSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVEKSRQVL 300

Query: 297 ENADLILLLK----EINSKKEISFP--KNIDFIFIGTKSDLYSTYT----EEYDHLI--- 343
           + ADLILL+     E+ S+ E  F   + +D I I  K+DL          E        
Sbjct: 301 KEADLILLVLNYSDELTSEDENIFKAVEGMDVIVIVNKTDLDQKIDMNRVRELSKHHKLV 360

Query: 344 --SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S    +G+++L   I S+      +    +  S+ RH+  L+Q    ++ A    E  
Sbjct: 361 TTSLLEDQGVDDLEEAIASLFFAGSIEAGDMTYVSNTRHIALLNQAQNAIDEAMQGVEMG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DI+  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 421 TPIDIVQIDLTRTWELLGEIIGDSVHESLIDQLFSQFCLGK 461


>gi|226952825|ref|ZP_03823289.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Acinetobacter sp. ATCC 27244]
 gi|226836446|gb|EEH68829.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Acinetobacter sp. ATCC 27244]
          Length = 454

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 169/457 (36%), Positives = 263/457 (57%), Gaps = 23/457 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M H+  TI A++T      + +IRLSGP  + + + + +K+ P  R A+ R F+ +D  +
Sbjct: 4   MQHQT-TIAAIATPLGRGGVGVIRLSGPKAYMIAKELTQKQLPTARMAAFRQFYDVDNSV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+++ FP+P SFTGED  E   HGG  + N +L  L  +     A  GEFS RAFEN
Sbjct: 63  MDEGIILCFPNPHSFTGEDVVEIQGHGGPVIQNALLARLLDL-GATAAKAGEFSMRAFEN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF E
Sbjct: 122 GKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +  ++L  +  +++ + +     + G+++R G ++VI G  NAGKSSL NALA
Sbjct: 182 -EEIDFLADGKILALLDDVQDSVKAVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VE+EGI+R   E+E AD
Sbjct: 241 GHERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEREGIRRAIKEIEQAD 300

Query: 301 LILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISS 345
           L+LL+ ++N   E             +    + IG K DL     E  D+       +S+
Sbjct: 301 LLLLVYDLNQGDEPLQLAHEYFADHLEPKRLLLIGNKCDLTGQPAEMTDYQGFRHIRVSA 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403
               G++ LI+ I +     F+    +  +  RHL  + +T RYL  A   L   + G +
Sbjct: 361 KQDMGVQALIDAITA--HAGFQPEEDTFIARTRHLDAMKRTQRYLAEAREQLVVFNAG-E 417

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 418 LVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|52673270|emb|CAH56508.1| putative tRNA modification GTPase trmE [Bacillus amyloliquefaciens
           FZB42]
          Length = 462

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 158/459 (34%), Positives = 257/459 (55%), Gaps = 25/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLD---G 58
           +TI A+ST     AI+I+RLSGP   ++ + + K  K          ++ Y    D   G
Sbjct: 5   DTIAAISTPMGEGAIAIVRLSGPEAVKIADKMYKGPKGKTLSSAESHTIHYGHIADSTTG 64

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           RI+++ ++ V  +P +FT ED  E + HGGI  VN +L+ LA     RLA PGEF++RAF
Sbjct: 65  RIIEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 123

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    ++M  M G LS+L  +  D+L    + +E ++D+
Sbjct: 124 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRDELLETLAHVEVNIDY 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     +K +I + +   + G+I+R G   VI+G  N GKSSL N+
Sbjct: 184 PEYDDVEEMTHQLLVEKASGVKKEIEALLRTSEQGKILREGLSTVIIGRPNVGKSSLLNS 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 244 LVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 303

Query: 299 ADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LI 343
           ADLILL+   + +      K     + +D I I  K+DL +    E              
Sbjct: 304 ADLILLVLNHSEELSEEDVKLFEAVEGMDVIVIMNKTDLEAKIDAERVKELAKGRPVVTT 363

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG+++L   I+S+      +    +  S+ RH+  L Q  + ++ A +  E+D  
Sbjct: 364 SLLKEEGIQDLEEAIQSLFYTGAIESGDLTYVSNTRHISILHQAKQAIDDALNGIEQDVP 423

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 424 IDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 462


>gi|184156315|ref|YP_001844655.1| GTPase [Lactobacillus fermentum IFO 3956]
 gi|227514112|ref|ZP_03944161.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum
           ATCC 14931]
 gi|183227659|dbj|BAG28175.1| GTPase [Lactobacillus fermentum IFO 3956]
 gi|227087483|gb|EEI22795.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum
           ATCC 14931]
 gi|299783731|gb|ADJ41729.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum
           CECT 5716]
          Length = 462

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 146/461 (31%), Positives = 244/461 (52%), Gaps = 23/461 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD--- 57
           N E++TI A+ST      ISIIR+SG     V   I K K     +  ++ Y   +D   
Sbjct: 3   NSEQDTIAAISTPVGEGGISIIRVSGDQALDVVSRIFKGKDLHQVKSHTINYGHIIDPAS 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  +D+ ++ V  +P+++T ED  E + HGG+   N  L+ L      RLA PGE+++RA
Sbjct: 63  GETVDEVMVSVMLAPKTYTKEDVVEINCHGGLLATNRALQ-LTLTNGARLAEPGEYTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+   ++++  + G+LS L       +  + + +E ++D
Sbjct: 122 FLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSRLIKALRQDILDVLAQVEVNID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E + V+  ++K +      ++  + + +   K G+++R+G    I+G  N GKSSL N
Sbjct: 182 YPEYDAVEEMTTKMLKEKASEVRQRLETLLQTAKEGKVLRDGLATAIIGRPNVGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  +D AIVT++ GTTRDV+   +++ G  +K+ DTAGIR TDD VEK G++R+   +E
Sbjct: 242 ALLHEDKAIVTEVAGTTRDVIEEYVNVAGVPLKLIDTAGIRHTDDTVEKIGVERSKQAIE 301

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDHL 342
            ADLILLL + +       +  I        + I  K+DL +             +    
Sbjct: 302 TADLILLLIDSSRPLTEEDRALIEATAQKPRMVIFNKTDLPAQVDLAELTELVNGDPVIQ 361

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVRYLEMASL-NEKD 399
            S     G++EL   I     N+  +      + ++ RH+  L Q V  L       E  
Sbjct: 362 TSILEHAGMQELGQAIAHRFFNEGIESNRGAVMVTNARHIGLLHQAVDSLNAVLEGIEAG 421

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  ++  A  +LG+ITG    ++LLD +FS+FC+GK
Sbjct: 422 MPVDLVQIDMTDAWNTLGEITGQTYQDELLDQLFSQFCLGK 462


>gi|71735987|ref|YP_277292.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|123634468|sp|Q48BF3|MNME_PSE14 RecName: Full=tRNA modification GTPase mnmE
 gi|71556540|gb|AAZ35751.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320321683|gb|EFW77782.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331115|gb|EFW87086.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881913|gb|EGH16062.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 456

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 164/461 (35%), Positives = 245/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGRAAEAIIGRTL-KPRFAHYGPFVDDAGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDPIDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    G GLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGAGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+LR A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|312864738|ref|ZP_07724969.1| tRNA modification GTPase TrmE [Streptococcus downei F0415]
 gi|311099865|gb|EFQ58078.1| tRNA modification GTPase TrmE [Streptococcus downei F0415]
          Length = 456

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 140/456 (30%), Positives = 244/456 (53%), Gaps = 18/456 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI I+RLSG     + + + K K       S    +G    D
Sbjct: 3   ITKEFDTIAAISTPLGEGAIGIVRLSGSQAVSIAKSVFKGKD-LESVPSHTINYGHIMED 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ ++ V  SP++FT ED  E + HGG+AV N IL+ L +    R+A PGEF++RA
Sbjct: 62  SEIIDEVMVSVMRSPKTFTREDVVEINTHGGLAVTNEILQLLLRS-GARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G L +L      ++ +  + +E ++D
Sbjct: 121 FLNGRVDLTQAEAVMDLIRAKTDKAMNIAVSQLDGSLKNLINNTRQEILNTLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++  +       +  ++  ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 181 YPEYDDVEEMTTALMCEKTQEFEELLTRLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L ++D AIVTD+ GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   + 
Sbjct: 241 NLLREDKAIVTDVAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVERSRKALA 300

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSFT 347
            ADL+LL+   +       +  +   K    I +  K+DL      +        IS   
Sbjct: 301 EADLVLLVLNGSENLSQQDRDLLDISKEAKRIILINKTDLPQKIELDQLPTDAIPISVLN 360

Query: 348 GEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDI 404
            + +E +  +I  +  +     +   +  S+ RH+  + + +  L+      E    +D+
Sbjct: 361 NQNMEAIEERINDLFFDNAGLVEKDATYLSNSRHISLIEKALASLQEVNQGLEAGMPVDL 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LQVDMTRCWEILGEITGDAAPDELITQLFSQFCLGK 456


>gi|251791873|ref|YP_003006593.1| tRNA modification GTPase TrmE [Aggregatibacter aphrophilus NJ8700]
 gi|247533260|gb|ACS96506.1| tRNA modification GTPase TrmE [Aggregatibacter aphrophilus NJ8700]
          Length = 451

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 168/454 (37%), Positives = 255/454 (56%), Gaps = 22/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP+   V + +   K P PR A    F   DG +LD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPNAIDVAQAVLG-KCPKPRMADYLPFKDEDGTLLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILRIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++ + +  +   +    ++ K G I++ G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIESYLNDIIAQLDGVRAEAKQGSILQEGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + L+G  + I DTAG+RE  D VE+ GI R + E+E AD ILL
Sbjct: 240 AIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLREATDEVERIGISRAWSEIEQADRILL 299

Query: 305 LKEINSKKE----------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTG 348
           + + +  ++             P +I    I  K+DL       Y+         S+ T 
Sbjct: 300 MLDGSDTEQDLSKVRSEFLAKLPNHIPVTIIRNKADLTGEQEGLYEEQGYTVVSLSAKTQ 359

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIA 406
            G+E L N +K  +  +   +     + +RHL  L Q  ++L+     L E   G +++A
Sbjct: 360 RGVEILRNHLKQSMGYQTG-MEGGFLARRRHLEALEQAAQHLQIGHVQLTEFHAG-ELLA 417

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRL   +L +ITG    + LL  IFS FCIGK
Sbjct: 418 EELRLVQSALSEITGQFTSDDLLTNIFSSFCIGK 451


>gi|89092260|ref|ZP_01165214.1| GTP-binding protein in thiophene and furan oxidation
           [Oceanospirillum sp. MED92]
 gi|89083348|gb|EAR62566.1| GTP-binding protein in thiophene and furan oxidation
           [Oceanospirillum sp. MED92]
          Length = 455

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 163/459 (35%), Positives = 247/459 (53%), Gaps = 23/459 (5%)

Query: 1   MN-HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           M     +TI A +T      + I+R+SGP    +   + K +   PR A    FF  + +
Sbjct: 1   MTLTNNDTITAQATPPGRGGVGIVRVSGPLAKAISTQVLKTEL-KPRYAYYGPFFDSNDQ 59

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+G+ + FP P SFTGED  E   HGG  +V+ IL  + K    RLANPGEFS RAF 
Sbjct: 60  EIDQGIALYFPGPNSFTGEDVLELQGHGGPVIVDLILNRV-KELGARLANPGEFSERAFL 118

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N K+DL +AE++ADLI S +E   R ++  + GE S    + ++ L ++R ++EA +DF 
Sbjct: 119 NDKLDLAQAEAIADLIDSSSEQAARCAIRSLQGEFSKRIHELVEALINLRIYVEAAIDFP 178

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E E++   +  +VL+D+  +   + +  ++ K G ++R G  +VI G  NAGKSSL NAL
Sbjct: 179 E-EEIDFLADGKVLSDLKSVLGKVEAVQAEAKQGSLLREGMSVVIAGRPNAGKSSLLNAL 237

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+  A
Sbjct: 238 AGRETAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAPDEVERIGINRAWEEIRKA 297

Query: 300 DLILLLKEI-----NSKKEI------SFPKNIDFIFIGTKSDLYSTYT---EEYDHLI-- 343
           D +LL+ +      +  ++I        P++     I  K+DL        E +DH    
Sbjct: 298 DRVLLMVDSQSTQTDDPEQIWPEFVHQLPESSRITVIRNKADLSGETIGQREAHDHTTIT 357

Query: 344 -SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
            S+    G++ L N +K  +            + +RHL  L +    L+      E +  
Sbjct: 358 LSAKEQSGVDLLRNHLKETM-GFSSTTEGGFMARRRHLDALERAHELLQTGLDQLEYNGA 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LR A  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 GELLAEDLRQAQNSLNEITGEFTPDDLLGRIFSSFCIGK 455


>gi|299133195|ref|ZP_07026390.1| tRNA modification GTPase TrmE [Afipia sp. 1NLS2]
 gi|298593332|gb|EFI53532.1| tRNA modification GTPase TrmE [Afipia sp. 1NLS2]
          Length = 439

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 174/441 (39%), Positives = 259/441 (58%), Gaps = 3/441 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M  +  TI+A+++G  PSAI+I+R+SGP      E +C +  P PR A+L      +   
Sbjct: 1   MPFQLPTIYALASGRPPSAIAIVRVSGPRAAATLESLCGR-LPRPRTATLTTLTSPETGP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ + + FP+P S TGED AEF +HGG AV+  +   L K+  LR A PGEF+RRAFEN
Sbjct: 60  IDQAVALWFPAPHSATGEDVAEFQLHGGRAVIAALFAALGKIEGLRPAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++T+ QRR ++  + G L      W  ++    + +EA +DFS+
Sbjct: 120 GKLDLTEAEGLDDLIHADTDRQRRQALRHLQGLLGHRAQTWRKQIIEAMALVEAGIDFSD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV        +  +  LK++I   ++     E +R G ++ I G  NAGKS+L N LA
Sbjct: 180 EGDVSAELMAPAMQRVAALKSEIQEILAASAQSERLREGLQVAIAGPPNAGKSTLLNRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIV+   GTTRDV+ + LDL+GY V + DTAG+RET+D VE+EG++R     E+AD
Sbjct: 240 RREAAIVSPYAGTTRDVIEVHLDLDGYPVTLIDTAGLRETNDPVEQEGVRRARARAESAD 299

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIK 359
           L+L + E                 +  K DL +T T+ E    IS+ TG+G++ ++  + 
Sbjct: 300 LVLWMCEAGDDAPPPLADGAPLWVVRNKIDLAATPTKGEGGFAISAATGQGVDAVVGSLV 359

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
               + F     ++ S  RH   L++TV  LE A       G +I+AE LR+A  +LG++
Sbjct: 360 DFARDTFGGGEAALVSRARHRALLTETVEALERAG-QRGGEGDEIVAEELRIAIHALGRL 418

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
            G VDVE++LD IF +FCIGK
Sbjct: 419 LGRVDVEEILDSIFREFCIGK 439


>gi|30248403|ref|NP_840473.1| tRNA modification GTPase TrmE [Nitrosomonas europaea ATCC 19718]
 gi|46577435|sp|Q82XA1|MNME_NITEU RecName: Full=tRNA modification GTPase mnmE
 gi|30138289|emb|CAD84297.1| GTP-binding protein (HSR1-related):tRNA modification GTPase TrmE
           [Nitrosomonas europaea ATCC 19718]
          Length = 451

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 167/455 (36%), Positives = 243/455 (53%), Gaps = 19/455 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI A++T      I I+R+SG +   +   I   K P PR A L  F   + +I
Sbjct: 1   MTS-NDTIAAIATPPGRGGIGIVRISGTNLESLARGILG-KLPDPRHAGLFSFLDQNSQI 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + FPSP S+TGE+  E   HGG AV+N +L+   ++   RLA PGEF+ RAF N
Sbjct: 59  IDQGIALYFPSPHSYTGEEVLELQGHGGPAVMNLLLDRCLQL-GARLAEPGEFTLRAFLN 117

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI++ T    R ++  + GE SS   Q +  L  +R  +EA LDF E
Sbjct: 118 DKLDLAQAEGVADLIAASTANAARCAVRSLHGEFSSTIHQLVSALIDLRVLVEATLDFPE 177

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++    S      +  ++  +   +   + G +++ G K+V+ G  N GKSSL N LA
Sbjct: 178 -EEIDFLQSAHAAEQLATIRAKLEQVLVASRQGNLLQEGIKVVLAGQPNVGKSSLLNRLA 236

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDIPGTTRD +   +++EG  + + DTAG+RET DIVE+ GI RT+  +E AD
Sbjct: 237 GDEVAIVTDIPGTTRDTVRQSIEIEGIPLHLIDTAGLRETSDIVEQHGIARTYAAIEQAD 296

Query: 301 LILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFT 347
           L+LLL +        +       P+ +  + +  K DL          T      +S+  
Sbjct: 297 LVLLLVDSRHGVTEEDRSVLTRLPERLPVLTVHNKIDLSAQPPRLEENTSGPTIYLSAIN 356

Query: 348 GEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDII 405
           GEG+E L    +K+           +  + +RHL  L Q    LE A+        L+I+
Sbjct: 357 GEGIELLRAALLKTAGWQANIAGEGAYMARQRHLQALIQAKELLERAAAWLHRADQLEIL 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRLA  +L  ITG    + LL  IFS FCIGK
Sbjct: 417 AEELRLAQQALSSITGEFTSDDLLGEIFSSFCIGK 451


>gi|222087929|ref|YP_002546467.1| tRNA modification GTPase TrmE [Agrobacterium radiobacter K84]
 gi|221725377|gb|ACM28533.1| tRNA modification GTPase TrmE [Agrobacterium radiobacter K84]
          Length = 444

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 220/441 (49%), Positives = 299/441 (67%), Gaps = 3/441 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TIFA+S+GALP+ ++++R+SGP              P PR+A+L+     +G  
Sbjct: 6   MNAIGDTIFALSSGALPAGVAVVRISGPK-ALAAVAALAGTLPKPRQAALKTIRTRNGLT 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GL++VFP+P SFTGED AE  VHGG AVV  +L+EL+     RLA  GEFSRRA EN
Sbjct: 65  IDQGLVLVFPAPASFTGEDCAEIQVHGGKAVVAALLDELSNFVGCRLAEHGEFSRRALEN 124

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL+E E LADLI++ETEMQRRL++E  +G LS LY  W D+LT  R+ IEA+LDF++
Sbjct: 125 GKMDLVEVEGLADLIAAETEMQRRLAVEHAAGGLSKLYEGWADRLTRARALIEAELDFAD 184

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+DV    S  V +D+  L+ ++S+H++    GEI+R+G K+VI G  NAGKSSL NALA
Sbjct: 185 EDDVPGSVSDMVWDDMAKLRAELSAHLAGAGFGEIVRDGLKVVIAGAPNAGKSSLMNALA 244

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIVTDI GTTRDVL +DL++EGY V++ DTAG+RET++++E+EGIKR       AD
Sbjct: 245 RREVAIVTDIAGTTRDVLHVDLNIEGYAVRLYDTAGLRETEEVIEREGIKRALRTAAEAD 304

Query: 301 LILLLKEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
           +IL L EI +  +I FP        +GTK+D++      YD  ISS TG GL EL   + 
Sbjct: 305 VILSLAEIGTGAQIDFPGFGGRVFRVGTKADIHPADETGYDLCISSSTGAGLAELHQLLV 364

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
             L  +   L  ++PS  RH   L++++  L  A ++    GLDI AE LR A  SLG+I
Sbjct: 365 EDLQERTASLSLALPSRLRHRTLLAESLEALTQA-VSATSVGLDIRAEYLRQAGHSLGRI 423

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG VDVE LLD+IFS+FCIGK
Sbjct: 424 TGRVDVEDLLDVIFSEFCIGK 444


>gi|270289896|ref|ZP_06196122.1| tRNA modification GTPase TrmE [Pediococcus acidilactici 7_4]
 gi|270281433|gb|EFA27265.1| tRNA modification GTPase TrmE [Pediococcus acidilactici 7_4]
          Length = 464

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 144/462 (31%), Positives = 252/462 (54%), Gaps = 25/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
           + E +TI A+ST      ISIIR+SG +  +V   I + K    + AS    +G      
Sbjct: 5   STEFDTIAAISTPPGEGGISIIRISGVNALKVASQIYRGKD-LAKVASHTINYGHVVDPA 63

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
               +D+ ++ V  +P ++T ED  E + HGGI   N IL+ L    + RLA PGEF+ R
Sbjct: 64  TDEEIDEVMVSVMRAPHTYTKEDVVEINCHGGIVATNRILQ-LILGLDARLAKPGEFTER 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+   +++++ + G LS L       +  + + +E ++
Sbjct: 123 AFLNGRIDLSQAEAVMDLIRAKTDQSMKVALDQLDGNLSHLIKNLRQDILDVLAQVEVNI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +    + +K  ++  ++  K G+++R+G    I+GH N GKSS+ 
Sbjct: 183 DYPEYDDVETMTTRLLKEKAIEVKAKVNQLLATAKQGKVLRDGLATAIIGHPNVGKSSIL 242

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTD+ GTTRDV+   ++++G  +K+ DTAGI ET+D VEK G+ R+   +
Sbjct: 243 NHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETEDKVEKIGVDRSRKAL 302

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDH 341
           + ADL++L+ + +       ++ +    N+  I +  K+DL +            E    
Sbjct: 303 QQADLVILVLDSSVPLRDEDRQLLDQTANMQRIVVLNKTDLPTKINLNELQKYASEAEII 362

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASL-NEK 398
             S+    G ++L ++I  +      +   +  + ++ RH+  L QTV  L+      E 
Sbjct: 363 KSSAVAPLGTKDLEDRIAKLFFAGSIENSSNNVMVTNARHIGLLQQTVTALDSVLDGIEA 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++  A   LG+ITG    ++LLD +FS+FC+GK
Sbjct: 423 GMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK 464


>gi|90581133|ref|ZP_01236932.1| tRNA modification GTPase [Vibrio angustum S14]
 gi|90437654|gb|EAS62846.1| tRNA modification GTPase [Vibrio angustum S14]
          Length = 455

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 159/458 (34%), Positives = 243/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      + IIR+SGP   +V   +  ++    R A    F   DG  
Sbjct: 1   MNQHIDTIVAQATPPGRGGVGIIRVSGPKAKEVALAVAGRELKT-RYAEYLPFKNEDGTA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F  P SFTGED  E   HGG  +++ ++  + K+  +R A PGEFS RAF N
Sbjct: 60  LDQGIALFFKGPNSFTGEDVLELQGHGGPVLMDMMIRRILKIDGIRAARPGEFSERAFMN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + + + + G  S+   + ++ L H+R F+EA +DF E
Sbjct: 120 DKLDLAQAEAIADLIDASSEEAAKSAFKSLQGAFSTKVNELVEALIHLRIFVEAAIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  +V  D+  + + +++   +   G I+R G K+VI G  NAGKSSL NAL+
Sbjct: 180 -EEIDFLSDGKVGGDLNGIIDRLNAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALS 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            KD AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+ +AD
Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWDEIAHAD 298

Query: 301 LILLLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLI 343
            +L +      +    KEI        P ++    I  K++L                 +
Sbjct: 299 RVLFMVDSTTTDATDPKEIWPDFIERLPADMGLTVIRNKAELTGEQAGICHANNPTLIRL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402
           S+ TG+G++ L   +K  +            + +RHL  L +   +L +     +     
Sbjct: 359 SARTGDGVDALREHLKQCM-GFSGTTEGGFMARRRHLDALERAAEHLAIGKEQLEGFMAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I+AE LRLA   L +ITG    + LL  IF+ FCIGK
Sbjct: 418 EILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455


>gi|325978110|ref|YP_004287826.1| tRNA modification GTPase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178038|emb|CBZ48082.1| tRNA modification GTPase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 457

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 141/458 (30%), Positives = 250/458 (54%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           + +E +TI A+ST     AI I+RLSG     + + + + K    + AS    +G     
Sbjct: 2   ITNEFDTIAAISTPLGEGAIGIVRLSGTEALAIAQKVYRGKD-LNKVASHTINYGHIVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               +LD+ ++ V  +P++FT E+  E + HGG+AV N IL+ L      RLA PGEF++
Sbjct: 61  NTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEILQ-LVLRQGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   
Sbjct: 240 LNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           +E ADL+LL+   +       +  +   K+ + I +  K+DL      +        IS 
Sbjct: 300 LEEADLVLLVLNSSEPLTNQDRALLELSKDSNRIILLNKTDLPEKIEADQLPDDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++ +  +I  +  +     +   +  S+ RH+  + + V+ L+  +   E    +
Sbjct: 360 LKNQNIDVIEERINQLFFDNAGIVEKDATYLSNARHISLIEKAVQSLQAVNEGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457


>gi|190893979|ref|YP_001980521.1| GTP-binding protein in thiophene and furan oxidation [Rhizobium
           etli CIAT 652]
 gi|226704784|sp|B3PS53|MNME_RHIE6 RecName: Full=tRNA modification GTPase mnmE
 gi|190699258|gb|ACE93343.1| GTP-binding protein in thiophene and furan oxidation [Rhizobium
           etli CIAT 652]
          Length = 439

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 210/441 (47%), Positives = 299/441 (67%), Gaps = 3/441 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI+A+S+GA PS +S+IR+SG     +   +     P  R AS R       + 
Sbjct: 1   MAMLNDTIYALSSGAPPSGVSVIRVSGTLTRDILFQLVGS-VPAARTASYRTIRTRYDQP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GL++ FP P SFTGED+AE  +HG  AV+  +  EL  +P +R+A  GEFSRRAFEN
Sbjct: 60  VDSGLVLFFPGPNSFTGEDAAELQIHGSKAVLAALFRELGDIPGVRMAMEGEFSRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL+E E LADLI +ETEMQRRL++E  +G +S++Y  W ++LT  R+ IEA+LDF +
Sbjct: 120 GKLDLVEVEGLADLIGAETEMQRRLAVEQSAGGVSAIYDSWAERLTRARALIEAELDFPD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+DV    S  V  D+  L++DI+ H+     GEIIR+G+K+VI G  NAGKSSL NALA
Sbjct: 180 EDDVPGSVSDMVWADMARLRHDIALHLEAASAGEIIRDGFKVVIAGAPNAGKSSLMNALA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++VAIVTDI GTTRDVL +DLD++GYLVK+ DTAG+RE +D VE EG++R  + + +AD
Sbjct: 240 KREVAIVTDIAGTTRDVLHVDLDIDGYLVKLYDTAGLREAEDRVEIEGVRRARVALRDAD 299

Query: 301 LILLLKEINSK-KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
           L+LLL ++++        + +  + +GTK DL  T ++ YD  IS+ TGEGL EL + I 
Sbjct: 300 LVLLLVDMSNPIIPADLEQALPHVTVGTKKDLIETASDRYDLQISTTTGEGLPELRDLIG 359

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
            ++  ++     +IPS +RH   L++ +  L+ A++++    L++  E LRLA+  LG+I
Sbjct: 360 RVVKERYGGQSLAIPSRQRHKDSLAKCLAALD-AAISQGSANLELRTEQLRLAAEYLGRI 418

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG VDVEQLLD+IFS+FCIGK
Sbjct: 419 TGRVDVEQLLDVIFSEFCIGK 439


>gi|254558111|ref|YP_003064528.1| tRNA modification GTPase TrmE [Lactobacillus plantarum JDM1]
 gi|254047038|gb|ACT63831.1| tRNA modification GTPase TrmE [Lactobacillus plantarum JDM1]
          Length = 463

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 140/462 (30%), Positives = 239/462 (51%), Gaps = 25/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
             E +TI A+ST      ISIIR+SG   F V   I K K    R  S    +G      
Sbjct: 4   TTEFDTIAAISTPPGEGGISIIRISGDQTFNVVTQIFKGKD-LSRVQSHTINYGHIVDPD 62

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ +  V  +P+++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 63  THQEVDEVMATVMRAPKTYTREDVVEINCHGGLVATNEILQ-LILSHGARMAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+   ++++  + G+LS L       +  + + +E ++
Sbjct: 122 AFLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSKLIRHLRQDILDVLAQVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  ++K +      +   I+  ++  K G+++R G    I+G  N GKSSL 
Sbjct: 182 DYPEYDAVETMTTKMLKEKATEVAQSINQLLATAKQGKVLREGLATAIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTD+ GTTRDV+   +++ G  +K+ DTAGIR+T+D VEK G++R+   +
Sbjct: 242 NHLLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRDTEDKVEKIGVERSRKAI 301

Query: 297 ENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEE---------YDH 341
             ADL+LL+ +         ++ +        I I  K+DL +   +             
Sbjct: 302 GAADLVLLVLDNSQPLTAEDRELLQETDQSKRIVILNKTDLPARLDQAELAQLVDLSDVL 361

Query: 342 LISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-K 398
            +S     G+ +L  +I  +  N+         + ++ RH+  L+Q  + L+        
Sbjct: 362 SMSVLEQSGVTQLEQRIAKMFFNEGIESSQNNVMVTNARHIGLLNQAKQALQDVQTGLVA 421

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 422 GMPVDLVQIDMTRCWEFLGQITGDSYEDELLDQLFSQFCLGK 463


>gi|167462792|ref|ZP_02327881.1| tRNA modification GTPase TrmE [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 457

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 159/457 (34%), Positives = 248/457 (54%), Gaps = 23/457 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRI 60
           KETI A+ST      IS+IR+SG     +   I K + P     +    +G     DG  
Sbjct: 3   KETIAAISTPLGEGGISVIRVSGDESIAIVNKIFKSRTPLTEAETHTVHYGHIVDTDGHK 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ L+ V  +P SFT ED  E   HGGI  V  +L+ L      RLA PGEF++RAF N
Sbjct: 63  VEEVLVTVMRAPRSFTTEDVVEVSCHGGIVSVKKVLD-LLLDQGARLAEPGEFTKRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++++   +++++ + G LS    +   +L  + + +E ++D+ E
Sbjct: 122 GRIDLTQAEAVIDLIRAKSDRAFQIALKQVDGILSKRIRKIRQELVELMAHVEVNIDYPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             DV   +   +L+       +I   +   + G+I+R G    I+G  N GKSSL NALA
Sbjct: 182 H-DVAEMTHALILDKCNKGIQEIDFLLHTAQQGKILREGIVTAIVGKPNVGKSSLMNALA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDIPGTTRDV+   +++ G  +K+ DTAGIRET D+VE+ G++R+   +  AD
Sbjct: 241 QENRAIVTDIPGTTRDVIEEYVNVGGIPLKLLDTAGIRETTDVVEQIGVERSRSALSEAD 300

Query: 301 LILLLK------EINSKKEISFPKNIDFIFIGTKSDLY---------STYTEEYDHLISS 345
           LILL+       E    + +S  K+   + I  K+DL          + Y +E    +S 
Sbjct: 301 LILLVLNSSEPLEEEELRLLSQLKDRQTLIILNKTDLPLGLHLEDICNLYPKEQVVKLSL 360

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
              +GLE+L   I  +    + +    +  S+ RH++ L Q  + L+ A   NE    +D
Sbjct: 361 IQQKGLEDLEKAISGLFFEGRLESGDMNYVSNVRHIHLLKQAKQSLQDAIEANENGVPID 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I  +LR A   LG+I G    E L+D IFS+FC+GK
Sbjct: 421 MIQIDLRAAWEQLGEIIGDSVAESLIDQIFSQFCLGK 457


>gi|16081154|ref|NP_391982.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221312085|ref|ZP_03593932.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221316410|ref|ZP_03598215.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221321323|ref|ZP_03602617.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221325606|ref|ZP_03606900.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|135725|sp|P25811|MNME_BACSU RecName: Full=tRNA modification GTPase mnmE
 gi|40025|emb|CAA44403.1| unnamed protein product [Bacillus subtilis]
 gi|467386|dbj|BAA05232.1| thiophen and furan oxidation [Bacillus subtilis]
 gi|2636649|emb|CAB16139.1| tRNA modification GTPase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 459

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 159/459 (34%), Positives = 254/459 (55%), Gaps = 25/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58
           +TI A+ST     AI+I+RLSGP   Q+ + I K  K          ++ Y   +D    
Sbjct: 2   DTIAAISTPMGEGAIAIVRLSGPEAIQIADKIYKGPKGKTLSSVESHTIHYGHIVDRPSD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R++++ ++ V  +P +FT ED  E + HGGI  VN +L+ LA     RLA PGEF++RAF
Sbjct: 62  RVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    ++M  M G LS+L  +   ++    + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRSEILETLAHVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     +K +I + +   + G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEYDDVEEMTHQILVEKATAVKKEIETLLRTSEQGKILREGLSTVIIGRPNVGKSSLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 241 LVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300

Query: 299 ADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHLI 343
           ADLILL+   + +      K     + +D I I  K+DL      E              
Sbjct: 301 ADLILLVLNYSEELSEEDVKLFEAVEGMDVIVILNKTDLEPKIDTERVRELANGRPVVTT 360

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG+ +L   I+S+      +    +  S+ RH+  L Q  R +E A S  E+D  
Sbjct: 361 SLLKEEGINDLEEAIQSLFYTGAIESGDLTYVSNTRHITILQQAKRAIEDALSGIEQDVP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 421 IDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 459


>gi|28379977|ref|NP_786869.1| tRNA modification GTPase TrmE [Lactobacillus plantarum WCFS1]
 gi|300769099|ref|ZP_07078988.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308182180|ref|YP_003926308.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|32171799|sp|Q88RX5|MNME_LACPL RecName: Full=tRNA modification GTPase mnmE
 gi|28272818|emb|CAD65747.1| thiophene and furan oxidation protein ThdF [Lactobacillus plantarum
           WCFS1]
 gi|300493339|gb|EFK28518.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308047671|gb|ADO00215.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 463

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 140/462 (30%), Positives = 239/462 (51%), Gaps = 25/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
             E +TI A+ST      ISIIR+SG   F V   I K K    R  S    +G      
Sbjct: 4   TTEFDTIAAISTPPGEGGISIIRISGDQTFNVVTQIFKGKD-LSRVQSHTINYGHIVDPD 62

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ +  V  +P+++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 63  THQEVDEVMATVMRAPKTYTREDVVEINCHGGLVATNEILQ-LILSHGARMAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+   ++++  + G+LS L       +  + + +E ++
Sbjct: 122 AFLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSKLIRHLRQDILDVLAQVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  ++K +      +   I+  ++  K G+++R G    I+G  N GKSSL 
Sbjct: 182 DYPEYDAVETMTTKMLKEKATEVAQSINQLLATAKQGKVLREGLATAIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTD+ GTTRDV+   +++ G  +K+ DTAGIR+T+D VEK G++R+   +
Sbjct: 242 NHLLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRDTEDKVEKIGVERSRKAI 301

Query: 297 ENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEE---------YDH 341
             ADL+LL+ +         ++ +        I I  K+DL +   +             
Sbjct: 302 GAADLVLLVLDNSQPLTAEDRELLQETDQSKRIVILNKTDLPARLDQAELAQLVDLSDVL 361

Query: 342 LISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
            +S     G+ +L  +I  +  N+         + ++ RH+  L+Q  + L+        
Sbjct: 362 SMSVLEQSGVTQLEQRIAKMFFNEGIESSQNNVMVTNARHIGLLNQAKQALQDVQTGLAA 421

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 422 GMPVDLVQIDMTRCWEFLGQITGDSYEDELLDQLFSQFCLGK 463


>gi|307305834|ref|ZP_07585580.1| tRNA modification GTPase TrmE [Shewanella baltica BA175]
 gi|306911327|gb|EFN41753.1| tRNA modification GTPase TrmE [Shewanella baltica BA175]
          Length = 458

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/458 (35%), Positives = 255/458 (55%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           ++   +TI A +T      + IIR+SG     V   +     P  R A    F    G++
Sbjct: 4   ISVTTDTIVAQATAPGRGGVGIIRISGDKASDVAMAVLG-HLPKTRYADYCDFKSASGQV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N
Sbjct: 63  IDQGIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   + +++ + GE S    + +D++T++R ++EA +DF +
Sbjct: 123 DKLDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPD 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+V   S  ++ N +  + + +    +  K G IIR G K+VI G  NAGKSSL NALA
Sbjct: 183 -EEVDFLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALA 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            K+ AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD
Sbjct: 242 GKESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSAD 301

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYD---HLI 343
            +L + +  +  ++             P N+    I  K+DL       TEE     + I
Sbjct: 302 RVLFMVDGTTTADVDPHTIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRI 361

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           S+ TG G+EEL   +KS++  +   L     + +RHL  L     +L++     E     
Sbjct: 362 SAKTGLGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAG 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELLAEELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 458


>gi|296330032|ref|ZP_06872516.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305676756|ref|YP_003868428.1| tRNA modification GTPase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296153071|gb|EFG93936.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305415000|gb|ADM40119.1| tRNA modification GTPase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 459

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 159/459 (34%), Positives = 255/459 (55%), Gaps = 25/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58
           +TI A+ST     AI+I+RLSGP   Q+ + I K  K          ++ Y   +D    
Sbjct: 2   DTIAAISTPMGEGAIAIVRLSGPEAIQIADKIYKGPKGKTLSSVESHTIHYGHIVDRPSD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R++++ ++ V  +P +FT ED  E + HGGI  VN +L+ LA     RLA PGEF++RAF
Sbjct: 62  RVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    ++M  M G LS+L  +   ++    + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRSEILETLAHVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     +K +I + +   + G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEYDDVEEMTHQLLVEKATAVKKEIEALLRTSEQGKILREGLSTVIIGRPNVGKSSLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 241 LVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300

Query: 299 ADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHLI 343
           ADLILL+   + +      K     + +D I I  K+DL +    E              
Sbjct: 301 ADLILLVLNYSEELSEEDVKLFEAVEGMDVIVIMNKTDLEAKIDSERVRELANGRPVVTT 360

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG+ +L   I+S+      +    +  S+ RH+  L Q  R +E A S  E+D  
Sbjct: 361 SLLKEEGINDLEEAIQSLFYTGAIESGDLTYVSNTRHISILQQAKRAIEDALSGIEQDVP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 421 IDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 459


>gi|205371919|ref|ZP_03224739.1| tRNA modification GTPase TrmE [Bacillus coahuilensis m4-4]
          Length = 461

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 152/461 (32%), Positives = 255/461 (55%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFG-----L 56
           E +TI A+ST     AI+I+RLSG    ++ + + +K    P   + S    +G      
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDQAVEIADRVFRKPNSQPLKDQISHTIHYGNIIEPE 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +++++ ++ +   P +FT ED  E + HGGI  VN +L+ + +    RLA PGEF++R
Sbjct: 62  TEQVIEEVMVSLMRGPRTFTREDVVEINCHGGIVSVNKVLQLVVR-QGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G LSSL  +   ++    + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSSLIRKLRQEILETLAHVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  + + +L     +K++I   +   + G+I+R G   VI+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTHRVLLEKSSKVKHEIELLLRTSEQGKILREGLSTVIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++++   +
Sbjct: 241 NSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVEKSRQVL 300

Query: 297 ENADLILLLK----EINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDHLISS----- 345
           + ADL+LL+     E   + E  F   + +D I I  K+DL      E    +S      
Sbjct: 301 KEADLLLLVLNHGDEFTEEDENLFKAVEGMDVIVIVNKTDLPQVINMEKVRELSKNHRLV 360

Query: 346 ----FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
                  +G++EL   I S+      +    +  S+ RH+  L+Q  + +E A    E  
Sbjct: 361 TTSLKEEQGIDELEEAIASLFFSGSIESGDLTYVSNSRHIALLTQAKQAIEEAIDGVEMG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DI+  +L  +   LG+I G    E L+D +FS+FC+GK
Sbjct: 421 TPIDIVQIDLTRSWELLGEIIGDSVHESLIDQLFSQFCLGK 461


>gi|260662533|ref|ZP_05863428.1| tRNA modification GTPase TrmE [Lactobacillus fermentum 28-3-CHN]
 gi|260553224|gb|EEX26167.1| tRNA modification GTPase TrmE [Lactobacillus fermentum 28-3-CHN]
          Length = 462

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 146/461 (31%), Positives = 244/461 (52%), Gaps = 23/461 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD--- 57
           N E++TI A+ST      ISIIR+SG     V   I K K     +  ++ Y   +D   
Sbjct: 3   NSEQDTIAAISTPVGEGGISIIRVSGDQALDVVSRIFKGKDLHQVKSHTINYGHIIDPAS 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  +D+ ++ V  +P+++T ED  E + HGG+   N  L+ L      RLA PGE+++RA
Sbjct: 63  GETVDEVMVSVMLAPKTYTKEDVVEINCHGGLLATNRALQ-LTLTNGARLAEPGEYTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+   ++++  + G+LS L       +  + + +E ++D
Sbjct: 122 FLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSRLIKALRQDILDVLAQVEVNID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E + V+  ++K +      ++  + + +   K G+++R+G    I+G  N GKSSL N
Sbjct: 182 YPEYDAVEEMTTKMLKEKASEVRQRLETLLQTAKEGKVLRDGLATAIIGRPNVGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  +D AIVT++ GTTRDV+   +++ G  +K+ DTAGIR TDD VEK G++R+   +E
Sbjct: 242 ALLHEDKAIVTEVAGTTRDVIEEYVNVAGVPLKLIDTAGIRHTDDTVEKIGVERSKQAIE 301

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDHL 342
            ADLILLL + +       +  I        + I  K+DL +             +    
Sbjct: 302 TADLILLLIDSSRLLTEEDRALIEATAQKPRMVIFNKTDLPAQVDLAELTELVNGDPVIQ 361

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVRYLEMASL-NEKD 399
            S     G++EL   I     N+  +      + ++ RH+  L Q V  L       E  
Sbjct: 362 TSILEHAGMQELGQAIAHRFFNEGIESNRGAVMVTNARHIGLLHQAVDSLNAVLEGIEAG 421

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  ++  A  +LG+ITG    ++LLD +FS+FC+GK
Sbjct: 422 MPVDLVQIDMTDAWNTLGEITGQTYQDELLDQLFSQFCLGK 462


>gi|327191200|gb|EGE58243.1| GTP-binding protein in thiophene and furan oxidation [Rhizobium
           etli CNPAF512]
          Length = 437

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 211/437 (48%), Positives = 299/437 (68%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI+A+S+GA PS +S+IR+SGP    +   +     P  R AS R       + +D G
Sbjct: 3   NDTIYALSSGAPPSGVSVIRVSGPLTRDILVHLVGS-VPAARMASYRTIRTRYDQPVDSG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGEDSAE  +HG  AV+  +  EL  +P +R+A  GEFSRRAFENGK+D
Sbjct: 62  LVLFFPGPNSFTGEDSAELQIHGSKAVLAALFRELGNIPGVRMAIEGEFSRRAFENGKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L+E E LADLI +ETEMQRRL++E  +G +S++Y  W ++LT  R+ IEA+LDF +E+DV
Sbjct: 122 LVEVEGLADLIGAETEMQRRLAVEQSAGGVSAIYDSWAERLTRARALIEAELDFPDEDDV 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S  V  D+  L+++I+ H+     GEIIR+G+K+VI G  NAGKSSL NALAK++V
Sbjct: 182 PGSVSDMVWADMARLRHEIALHLEAASAGEIIRDGFKVVIAGAPNAGKSSLMNALAKREV 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL +DLD++GYLVK+ DTAG+RE +D VE EG++R  + + +ADL+LL
Sbjct: 242 AIVTDIAGTTRDVLHVDLDIDGYLVKLYDTAGLREAEDRVEIEGVRRARVALRDADLVLL 301

Query: 305 LKEINSK-KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L +++         + +  + +GTK DL  T ++ YD  IS+ TG+GL EL   I  +++
Sbjct: 302 LVDMSDPIVPADLEQALPHVTVGTKKDLIETGSDRYDLQISTATGDGLPELRQLIGRVVA 361

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            +F  L  +IPS +RH   L++ +  L+ A++++    L++  E LRLA+  LG+ITG V
Sbjct: 362 ERFGGLSLAIPSRQRHKDSLAKCLAALD-AAISDSAASLELRTEQLRLAAEYLGRITGRV 420

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVEQLLD+IFS+FCIGK
Sbjct: 421 DVEQLLDVIFSEFCIGK 437


>gi|116334862|ref|YP_796389.1| tRNA modification GTPase TrmE [Lactobacillus brevis ATCC 367]
 gi|122268459|sp|Q03N64|MNME_LACBA RecName: Full=tRNA modification GTPase mnmE
 gi|116100209|gb|ABJ65358.1| tRNA modification GTPase, TrmE [Lactobacillus brevis ATCC 367]
          Length = 464

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 147/461 (31%), Positives = 243/461 (52%), Gaps = 23/461 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLD--- 57
             E +TI A+ST      ISIIRLSG   FQV   + K          ++ Y   LD   
Sbjct: 5   TTEFDTIAAISTPPGEGGISIIRLSGEEVFQVAAKLFKGADLTQVGSHTIHYGHILDPET 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  +D+ ++ V  +P+++T ED  E + HGGI   N IL+ L      RLA PGE+++RA
Sbjct: 65  GDEVDEVMVTVMRAPKTYTKEDIIEINCHGGIVATNRILQ-LCLSYGARLAEPGEYTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ DLI ++T+   +++++ + G+LS L       +    + +E ++D
Sbjct: 124 FLNGRIDLTQAESVMDLIRAKTDKSMKVALDQLDGDLSKLIRNLRQDILDALAQVEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++K +L     +K  I + ++  K G+++R G    I+G  N GKSSL N
Sbjct: 184 YPEYDDVETMTTKMLLEKAHEVKQQIKTLLATAKQGKVLREGLATAIVGRPNVGKSSLLN 243

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIVTD+ GTTRDV+   ++++G  +K+ DTAGIR+T D VEK G++R+   + 
Sbjct: 244 HLLHEDKAIVTDVAGTTRDVIEEYVNVKGVPLKLIDTAGIRDTTDKVEKIGVERSRKAIN 303

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLY---------STYTEEYDHL 342
            ADL++L+   +       +  ++  K+   I I  K+DL              +     
Sbjct: 304 TADLVMLVLNASEPLTAEDEALLTATKDTQRILILNKTDLPLQLDLAAVRQVAGDSPIIE 363

Query: 343 ISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKD 399
            S     G+++L   I  +  ++         + ++ RH+  L Q    L+         
Sbjct: 364 TSILQSTGMDQLEETIAHLFFDEGIESSQNTVMVTNARHIGLLHQASAALDDVQNGIAAG 423

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  ++  A   LG+ITG    ++LLD +FS+FC+GK
Sbjct: 424 MPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK 464


>gi|109900608|ref|YP_663863.1| tRNA modification GTPase TrmE [Pseudoalteromonas atlantica T6c]
 gi|123170439|sp|Q15MS9|MNME_PSEA6 RecName: Full=tRNA modification GTPase mnmE
 gi|109702889|gb|ABG42809.1| tRNA modification GTPase trmE [Pseudoalteromonas atlantica T6c]
          Length = 460

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 162/457 (35%), Positives = 248/457 (54%), Gaps = 21/457 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
             +++TI A +T +    + I+R+SG    +V E I     P  R A    F    G  L
Sbjct: 7   TPDQDTIVAQATASGRGGVGIVRVSGSLAAKVAEQIIG-HVPLIRNAQYVPFKSNTGEPL 65

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+G+ + F +P SFTGED  E   HGG  V++ +++    +PN+RLA PGEFS RA+ N 
Sbjct: 66  DQGIALFFKAPHSFTGEDVLELQGHGGQVVLDMLIKATLHVPNVRLARPGEFSERAYLND 125

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ADLI + +E   R ++  + GE S+     ++ LTH+R ++EA +DF + 
Sbjct: 126 KLDLAQAEAIADLIDASSEQAARGALRSLQGEFSTQINSLVELLTHLRIYVEAAIDFPD- 184

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E++   S  +V ND+  +   +SS  SQ + G ++R G ++VI G  NAGKSSL NALA 
Sbjct: 185 EEIDFLSDGKVQNDLKAITKQLSSVKSQARQGSLLREGMRVVIAGRPNAGKSSLLNALAG 244

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT I GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI+R + E+E AD 
Sbjct: 245 RDAAIVTAIAGTTRDVLKEHIHIDGMPLHIIDTAGLRDSSDEVERIGIERAWQEIEQADR 304

Query: 302 ILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYST------YTEEYDHLIS 344
           +L + +     E              PKN+    I  K+DL         Y +     +S
Sbjct: 305 VLFMLDSTETHENDPYKIWPEFMRRLPKNMGLTVIRNKADLSGENVGKVQYDDYPVFQLS 364

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           +   +G+E L   +K  +            + +RH+  + +   +L +     E +   +
Sbjct: 365 ASHKQGIEVLAEHLKECM-GFHSSNEGQFIARRRHIDAIERAEEHLLLGKQQLEDNLAGE 423

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 424 LLAEELRLAQAYLSEITGEFSSDDLLGKIFSSFCIGK 460


>gi|169635760|emb|CAQ16333.1| t-RNA modification GTPase protein [Halomonas cupida]
          Length = 458

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/463 (34%), Positives = 249/463 (53%), Gaps = 28/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   ETI AV+T   P  + I+R+SGP    +      +++  PR A    F+G +  +
Sbjct: 1   MSVAAETIAAVATAQGPGGVGIVRISGPLA-SIAAKAFSERELKPRYAHYGPFYGENREV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCIQL-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL +ALA
Sbjct: 179 -EEIDFLADGHVLGMLDTVRQELSTVMREAGQGALLRDGMTVVIAGRPNAGKSSLLDALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTE----EYDHLISS 345
            +LL+ +  + +               P       I  K+DL          +  H+  S
Sbjct: 298 RVLLVVDATAPEADDPFALWPEFLQQRPDPAKVTLIRNKADLTGEDIRLQVCDDGHVTIS 357

Query: 346 FT------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNE 397
            +      G+GLE L + +K+ +    +    S  + +RHL  L      LE   A L  
Sbjct: 358 LSARSTDAGDGLELLRDHLKACM-GYEQTSESSFSARRRHLEALRHASDALEHGRAQLTL 416

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              G +++AE+LR A  SLG+ITG    + LL  IFS FCIGK
Sbjct: 417 AGAG-ELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 458


>gi|293391846|ref|ZP_06636180.1| tRNA modification GTPase TrmE [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952380|gb|EFE02499.1| tRNA modification GTPase TrmE [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 451

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 162/453 (35%), Positives = 252/453 (55%), Gaps = 20/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + +   K P PR A    F   DG +LD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPKAIEVAQAVLG-KCPKPRMADYLPFKEADGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F  P SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIEGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   +    ++ K G I+R G K+VI G  NAGKSSL N LA ++ 
Sbjct: 180 DFLADGKIEGHLNDIIAQLDKVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNTLAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + L+G  + I DTAG+R+  D VE+ GI R + E+E AD ILL
Sbjct: 240 AIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDATDEVERIGISRAWHEIEQADRILL 299

Query: 305 LKEINSKKE----------ISFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTG 348
           + + +  ++             P NI    I  K+DL       Y+        +S+ T 
Sbjct: 300 MLDSSDTEQDLTKVRSEFLAKLPNNIPLTIIRNKADLSGEAERLYEEDGYTVVNLSAKTQ 359

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAE 407
           +G++ L + +K  +  +   +     + +RHL  L    R+L+M  +        +++AE
Sbjct: 360 QGVDLLRDHLKQAMGYQTG-MEGGFLARRRHLEALELAARHLQMGHVQLTQFHAGELLAE 418

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 419 ELRMVQSALSEITGQFTSDDLLTNIFSSFCIGK 451


>gi|288905136|ref|YP_003430358.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain
           [Streptococcus gallolyticus UCN34]
 gi|288731862|emb|CBI13427.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain
           [Streptococcus gallolyticus UCN34]
          Length = 457

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 141/458 (30%), Positives = 250/458 (54%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           + +E +TI A+ST     AI I+RLSG     + + + + K    + AS    +G     
Sbjct: 2   ITNEFDTIAAISTPLGEGAIGIVRLSGTEALAIAQKVYRGKD-LNKVASHTINYGHIVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               +LD+ ++ V  +P++FT E+  E + HGG+AV N IL+ L      RLA PGEF++
Sbjct: 61  DTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEILQ-LVLRQGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   
Sbjct: 240 LNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           +E ADL+LL+   +       +  +   K+ + I +  K+DL      +        IS 
Sbjct: 300 LEEADLVLLVLNSSEPLTNQDRALLELSKDSNRIILLNKTDLPEKIEADQLPDDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++ +  +I  +  +     +   +  S+ RH+  + + V+ L+  +   E    +
Sbjct: 360 LKNQNIDVIEERINQLFFDNAGIVEKDATYLSNARHISLIEKAVQSLQAVNEGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457


>gi|154688207|ref|YP_001423368.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens FZB42]
 gi|308175809|ref|YP_003922514.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens DSM 7]
 gi|205829057|sp|A7ZAW1|MNME_BACA2 RecName: Full=tRNA modification GTPase mnmE
 gi|154354058|gb|ABS76137.1| TrmE [Bacillus amyloliquefaciens FZB42]
 gi|307608673|emb|CBI45044.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens DSM 7]
 gi|328555785|gb|AEB26277.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens TA208]
 gi|328914174|gb|AEB65770.1| tRNA modification GTPase mnmE [Bacillus amyloliquefaciens LL3]
          Length = 459

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 158/459 (34%), Positives = 257/459 (55%), Gaps = 25/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLD---G 58
           +TI A+ST     AI+I+RLSGP   ++ + + K  K          ++ Y    D   G
Sbjct: 2   DTIAAISTPMGEGAIAIVRLSGPEAVKIADKMYKGPKGKTLSSAESHTIHYGHIADSTTG 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           RI+++ ++ V  +P +FT ED  E + HGGI  VN +L+ LA     RLA PGEF++RAF
Sbjct: 62  RIIEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    ++M  M G LS+L  +  D+L    + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRDELLETLAHVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     +K +I + +   + G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEYDDVEEMTHQLLVEKASGVKKEIEALLRTSEQGKILREGLSTVIIGRPNVGKSSLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 241 LVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300

Query: 299 ADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LI 343
           ADLILL+   + +      K     + +D I I  K+DL +    E              
Sbjct: 301 ADLILLVLNHSEELSEEDVKLFEAVEGMDVIVIMNKTDLEAKIDAERVKELAKGRPVVTT 360

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG+++L   I+S+      +    +  S+ RH+  L Q  + ++ A +  E+D  
Sbjct: 361 SLLKEEGIQDLEEAIQSLFYTGAIESGDLTYVSNTRHISILHQAKQAIDDALNGIEQDVP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 421 IDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 459


>gi|304412701|ref|ZP_07394304.1| tRNA modification GTPase TrmE [Shewanella baltica OS183]
 gi|304348911|gb|EFM13326.1| tRNA modification GTPase TrmE [Shewanella baltica OS183]
          Length = 453

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/455 (35%), Positives = 253/455 (55%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P  R A    F    G+++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRISGDKASDVAMAVLG-HLPKTRYADYCDFKSASGQVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+
Sbjct: 61  GIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S    + +D++T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++ N +  + + +    +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYD---HLISSF 346
            + +  +  ++             P N+    I  K+DL       TEE     + IS+ 
Sbjct: 300 FMVDGTTTADVDPHTIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++
Sbjct: 360 TGLGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|163791744|ref|ZP_02186131.1| tRNA modification GTPase [Carnobacterium sp. AT7]
 gi|159872986|gb|EDP67103.1| tRNA modification GTPase [Carnobacterium sp. AT7]
          Length = 462

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 149/463 (32%), Positives = 238/463 (51%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL--- 56
           M  E ETI A+ST     AI I+RLSG    ++ + + +   K    + S    +G    
Sbjct: 1   MTLEFETIAAISTPPGEGAIGIVRLSGDQAIEIADRVYRSGSKALAEQKSHTIHYGHIEN 60

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                 +D+ ++ V   P++FT ED  E + HGGI  VN +L+        RLA PGEF+
Sbjct: 61  PKTNETIDEVMVSVMREPKTFTREDVVEINCHGGITSVNQVLQ-CVLQNGARLAEPGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG+IDL +AE++ DLI ++T+    ++++ + G LS L       +    + +E 
Sbjct: 120 KRAFLNGRIDLSQAEAVMDLIRAKTDRAMHVALKQLDGNLSHLIRNLRMDILDTLAQVEV 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  +SK ++     +K  I   ++    G+I+R G    I+G  N GKSS
Sbjct: 180 NIDYPEYDDVEEMTSKLLIEKAKLVKASIQQLLATASQGKILREGLATAIIGRPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIVTDI GTTRDV+   + + G  +K+ DTAGIRET+DI+E+ G++R+  
Sbjct: 240 LLNYLLDEEKAIVTDIAGTTRDVIEEYISVRGVPLKLIDTAGIRETEDIIERIGVERSRQ 299

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEY 339
            + +ADL+LL+        I  K  I        I I  K DL +             E 
Sbjct: 300 ALSDADLVLLVFNQSEPLTIEDKALIEATNQHRRIVILNKMDLPNKLDLAELETLVEPES 359

Query: 340 DHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397
               S  +  G++ L   I ++    +  +   +  S+ RH+  L+     L E+ S  E
Sbjct: 360 IVKTSILSKSGIDVLEKNIANLFFTGQTGERDATYVSNVRHIALLNDAEEALDEVISGVE 419

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D+I  ++      LG+ITG    ++LL  +FS+FC+GK
Sbjct: 420 MGMPVDLIQIDMTRCWDLLGEITGDSVQDELLTQLFSQFCLGK 462


>gi|330890255|gb|EGH22916.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. mori str.
           301020]
          Length = 456

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 165/461 (35%), Positives = 245/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGRAAEAIIGRTL-KPRFAHYGPFVDDAGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPIDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    GEGLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGEGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++AE+ R A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 AG-ELLAEDPRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456


>gi|240851403|ref|YP_002972806.1| tRNA modification GTPase TrmE [Bartonella grahamii as4aup]
 gi|240268526|gb|ACS52114.1| tRNA modification GTPase TrmE [Bartonella grahamii as4aup]
          Length = 435

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 191/436 (43%), Positives = 277/436 (63%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFAVS+G LPS +++IRLSGP    + + +C +  P  R          DG  LD  L
Sbjct: 2   DTIFAVSSGLLPSGVAVIRLSGPHVVNIVKTLCGR-LPKARFMHYGNLTARDGSFLDSCL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HGG AVV+  L+EL+     R+A  GEFSRRAF  GK+DL
Sbjct: 61  TVFFPAPHSFTGEDCAEFHLHGGKAVVSRFLDELSTFSGCRIAEAGEFSRRAFMEGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE LADLI +ETE QRRL++ G SG L++LY  W  KL   R+FIEA+LDF +E D+ 
Sbjct: 121 VQAEGLADLIEAETESQRRLAVMGTSGHLTTLYRDWRHKLMKARAFIEAELDFVDEADIP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           N  S +V  D+  +   I  +I++G+   I+R+G KIVI G  N+GKSS+ N L+ + VA
Sbjct: 181 NAISDKVWKDVEDICTSIREYITEGERASILRDGLKIVIAGAPNSGKSSIMNRLSGRSVA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+  GTTRD L + + L G  + ++DTAG R+T++ +E+ GI+     V  ADL++L+
Sbjct: 241 IVTEEAGTTRDALEMRIILGGLPIFLTDTAGFRKTENKIEQMGIEVAKQHVREADLVILV 300

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            +I + +++  P+ + +   +G K DLY    + +    S+ TG   +  I +++S   +
Sbjct: 301 YDIGNPEQVDLPETSAEIWCVGNKLDLYEKNDQHWSIQFSALTGLNFDYFIKELESFCHH 360

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +  ++   +P+ KR L  L + V+ +E  SLN     L + AE+LR AS  LGKITG +D
Sbjct: 361 RASEIGNIVPARKRQLQLLKEAVKEIE-YSLNYHSLDLSLRAEHLRCASDFLGKITGDID 419

Query: 425 VEQLLDIIFSKFCIGK 440
           VE LLDIIFS+FC+GK
Sbjct: 420 VEDLLDIIFSEFCVGK 435


>gi|311070643|ref|YP_003975566.1| tRNA modification GTPase TrmE [Bacillus atrophaeus 1942]
 gi|310871160|gb|ADP34635.1| tRNA modification GTPase TrmE [Bacillus atrophaeus 1942]
          Length = 459

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 158/459 (34%), Positives = 256/459 (55%), Gaps = 25/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLD---G 58
           +TI A+ST     AI+I+RLSGP   Q+ + + K  K          ++ Y   +D    
Sbjct: 2   DTIAAISTPMGEGAIAIVRLSGPEAIQIADRMYKGPKGKTISSAESHTIHYGHIVDRSTQ 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R++++ ++ V  +P +FT ED  E + HGGI  VN +L+ LA     RLA PGEF++RAF
Sbjct: 62  RVVEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    ++M  M G LS+L  +  ++L    + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRNELLETLAHVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     +K +I + ++  + G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEYDDVEEMTHQLLIEKASSVKKEIDALLTTSEQGKILREGLSTVIIGRPNVGKSSLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVEK G++R+   ++ 
Sbjct: 241 LVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRQVLKE 300

Query: 299 ADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LI 343
           ADLILL+   + +      K     K +D I I  K+DL      +              
Sbjct: 301 ADLILLVLNYSEELSEEDVKLFEAVKGMDVIVILNKTDLEPKIDADRVKELANGRPVVTT 360

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG+ +L   I+S+      +    +  S+ RH+  L +  R +E A +  E+D  
Sbjct: 361 SLLKEEGITDLEEAIQSLFFTGTIESGDLTYVSNTRHISILHEAKRAIEDALNGIEQDVP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 421 IDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 459


>gi|306831214|ref|ZP_07464375.1| tRNA modification GTPase TrmE [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426780|gb|EFM29891.1| tRNA modification GTPase TrmE [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 457

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 141/458 (30%), Positives = 249/458 (54%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           + +E +TI A+ST     AI I+RLSG     + + + + K    + AS    +G     
Sbjct: 2   ITNEFDTIAAISTPLGEGAIGIVRLSGTEALAIAQKVYRGKD-LNKVASHTINYGHIVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               +LD+ ++ V  +P++FT E+  E + HGG+AV N IL  L      RLA PGEF++
Sbjct: 61  NTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEIL-RLVLRQGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   
Sbjct: 240 LNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           +E ADL+LL+   +       +  +   K+ + I +  K+DL      +        IS 
Sbjct: 300 LEEADLVLLVLNSSEPLTNQDRALLELSKDSNRIILLNKTDLPEKIEADQLPDDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++ +  +I  +  +     +   +  S+ RH+  + + V+ L+  +   E    +
Sbjct: 360 LKNQNIDVIEERINQLFFDNAGIVEKDATYLSNARHISLIEKAVQSLQAVNEGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457


>gi|29655207|ref|NP_820899.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 493]
 gi|209363710|ref|YP_001423624.2| tRNA modification GTPase TrmE [Coxiella burnetii Dugway 5J108-111]
 gi|29542479|gb|AAO91413.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Coxiella burnetii RSA 493]
 gi|207081643|gb|ABS78334.2| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Coxiella burnetii Dugway 5J108-111]
          Length = 473

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 160/457 (35%), Positives = 249/457 (54%), Gaps = 22/457 (4%)

Query: 1   MNHEK-ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           M +   ETI A +T +    I ++R+SG     + + I     P PR A+   F    G 
Sbjct: 22  MTYVFPETIAAQATPSGRGGIGVVRVSGEKTKAIAQKILG-CVPKPRYATFVKFRD-SGS 79

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+G+ + FP P SFTGED  E H HGG  V++ +L  + K    R A PGEFS RAF 
Sbjct: 80  VIDEGIALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKA-GARQARPGEFSERAFL 138

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N KIDL +AE++ADLI++ +E   R +M  + GE S    Q +D L  +R +IEA +DF 
Sbjct: 139 NNKIDLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFP 198

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E E++   + + +   +  L + +       K G ++R G  +VI G  N GKSSL N L
Sbjct: 199 E-EEIDFLADERIKETLENLTHQVQEIEKTAKQGALLREGITVVIAGEPNVGKSSLLNLL 257

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           + ++ AIVTDI GTTRD++   + ++G  + + DTAG+R T+D+VEKEG++RT   V+ A
Sbjct: 258 SGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLTEDVVEKEGVRRTQKAVQQA 317

Query: 300 DLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLY----STYTEEYDHLI-S 344
           DL+LL+ + +   E                I  + +  K DL         +EY H+  S
Sbjct: 318 DLLLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIVENKIDLIGEAPRKENKEYPHIKLS 377

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLD 403
             T  G+E L N +K+    +      +  + +RH   +++   +L+ A+ +  +    +
Sbjct: 378 VKTRAGVELLKNHLKNTAGFEATH-ENNFIARRRHCDAIARASAFLKNANNHLLNQKAGE 436

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+L+LA  +L +ITG    + LL  IFS+FCIGK
Sbjct: 437 LVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 473


>gi|127514790|ref|YP_001095987.1| tRNA modification GTPase TrmE [Shewanella loihica PV-4]
 gi|166234821|sp|A3QJT0|MNME_SHELP RecName: Full=tRNA modification GTPase mnmE
 gi|126640085|gb|ABO25728.1| tRNA modification GTPase trmE [Shewanella loihica PV-4]
          Length = 453

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 160/455 (35%), Positives = 248/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P  R A    F   DG ++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGDKASDVAMAVLG-HLPKVRYADYCDFKAADGAVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ +  +  +R+A PGEFS +AF N K+
Sbjct: 61  GIALYFKGPNSFTGEDVLELQGHGGQVVLDMLIKRVMDVDGVRIAKPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + ++  + GE S+   + +D++T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALNSLQGEFSTQVHELVDQVTNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++   +  +   + S  S  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIAASLGKIITKLDSVQSSAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+E AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWAEIETADQVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSF 346
            + +  +   +             PKN+    +  K+DL     +  D        +S+ 
Sbjct: 300 FMVDGTTTDAVDPHDIWPDFIDRLPKNLGVTVVRNKADLTGESLDATDEQGHKVFRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G++EL   +KS++  +   L     + +RHL  L     +L +     E     +++
Sbjct: 360 TGSGVDELKAHLKSLMGYQ-SNLEGGFLARRRHLEALELASSHLALGQEQLEVYQAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMCQLALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|117619237|ref|YP_858697.1| tRNA modification GTPase TrmE [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|166200466|sp|A0KQZ6|MNME_AERHH RecName: Full=tRNA modification GTPase mnmE
 gi|117560644|gb|ABK37592.1| tRNA modification GTPase TrmE [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 453

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 165/455 (36%), Positives = 246/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + I+R+SGP+  QV E I   K P  R A    F    G+ LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIVRVSGPAAEQVAE-IVLGKLPRVRYAEYLPFRDEQGQPLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ ++F +P SFTGED  E   HGG  +++ ++  + ++  LR A PGEFS RAF N K+
Sbjct: 61  GIALLFKAPNSFTGEDVLELQGHGGPVIMDMLVRRILQIKGLRPARPGEFSERAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R +M  + G+ S    Q ++ LT +R ++EA +DF + E+
Sbjct: 121 DLAQAEAIADLIEASSEQAARSAMHSLQGQFSGKIQQLVESLTRLRIYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  +V  D+  +  ++     + K G ++R G K+VI G  NAGKSSL NALA ++
Sbjct: 180 IDFLSDGKVAGDLYAIMAELDDVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGRE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+E AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDKVEQIGIERAWAEIEQADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSF 346
            + +  +   +             PK I    +  K+DL       S       + IS+ 
Sbjct: 300 FMVDGTTTAAVDPREIWPEFVDRLPKKIGLTVVRNKADLTGEDLAPSQELGHAVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           T  GL  L   +K+ +  +         + +RHL  L +    L +A    E     +++
Sbjct: 360 TELGLSALREHLKACMGFQ-GNTEGGFMARRRHLDALERAAERLLVAKEQLEVFVAGELV 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453


>gi|88860621|ref|ZP_01135258.1| predicted GTPase [Pseudoalteromonas tunicata D2]
 gi|88817216|gb|EAR27034.1| predicted GTPase [Pseudoalteromonas tunicata D2]
          Length = 454

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 245/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
            +ETI A +T      + IIR+SG     V E +   K P  R A    F  L G  LD+
Sbjct: 3   NQETIAAQATAPGRGGVGIIRVSGKLARSVAEQLLG-KCPKTRYAEYVPFKALSGDELDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +L+E+ K+ ++RLA PGEFS RAF N K+
Sbjct: 62  GIALFFEGPNSFTGEDVLELQGHGGPVVLDMLLKEICKINDVRLAKPGEFSERAFMNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI++ +E   + ++  + GE S      ++++ H+R ++EA +DF + E+
Sbjct: 122 DLTQAEAIADLINATSEQAAKSALHSLQGEFSKHISTLVEQVIHLRMYVEAAIDFPD-EE 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  +V  D+  + + +S   +Q K G IIR G ++VI G  NAGKSSL NALA +D
Sbjct: 181 IDFLSDGKVSADLNAIISQLSEVTNQAKQGSIIREGMRVVIAGRPNAGKSSLLNALAGRD 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R++ DIVE+ GI+R + E++ AD +L
Sbjct: 241 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDIVEQIGIERAWDEIKQADRVL 300

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSF 346
            + +     +              P N+    I  K DL        +H        S+ 
Sbjct: 301 FMLDGTESTDTDPAAIWPEFIDKLPANLGITVIRNKIDLSGEQVSIQEHHNHPVISLSAK 360

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
             +G++ +   +K  +  +         + +RHL  LS    +L+      E     +I+
Sbjct: 361 NNQGIDLVREHLKQCMGYQ-GATEGGFMARRRHLEALSNAAYHLQTGKDQLEMHIAGEIL 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 420 AEELRLTQQFLNEITGEFTSDDLLGKIFSSFCIGK 454


>gi|322516820|ref|ZP_08069722.1| tRNA modification GTPase TrmE [Streptococcus vestibularis ATCC
           49124]
 gi|322124657|gb|EFX96121.1| tRNA modification GTPase TrmE [Streptococcus vestibularis ATCC
           49124]
          Length = 456

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 142/456 (31%), Positives = 246/456 (53%), Gaps = 18/456 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI I+RLSG     +   + K K      AS    +G    +
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDAVAIANKVFKGKN-LETVASHTINYGHIVEN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ ++ V  +P++FT ED  E + HGG+AV N IL+ L +    R+A PGEF++RA
Sbjct: 62  DETIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIRS-GARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G L  L      ++ +  + +E ++D
Sbjct: 121 FLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++  V       +  + + ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 181 YPEYDDVEEVTTALVREKTQDFQALLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDD+VEK G++R+   +E
Sbjct: 241 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALE 300

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSFT 347
            ADL+LL+   +       +  +   KN + I +  K+DL          E    IS   
Sbjct: 301 EADLVLLVLNSSEPLTEQDRTLLEISKNSNRIILLNKTDLPQAIQMEELPEDVIPISVLK 360

Query: 348 GEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDI 404
            E ++++ ++I  +  +     +   +  S+ RH+  +   +  LE      E    +D+
Sbjct: 361 NENIDKIEDRINQLFFDNAGLVEKDATYLSNARHISLIESALESLEAVNQGLELGMPVDL 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LQVDITRTWEILGEITGDAAPDELITQLFSQFCLGK 456


>gi|321313663|ref|YP_004205950.1| tRNA modification GTPase TrmE [Bacillus subtilis BSn5]
 gi|291486741|dbj|BAI87816.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. natto
           BEST195]
 gi|320019937|gb|ADV94923.1| tRNA modification GTPase TrmE [Bacillus subtilis BSn5]
          Length = 459

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 159/459 (34%), Positives = 255/459 (55%), Gaps = 25/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58
           +TI A+ST     AI+I+RLSGP   Q+ + I K  K          ++ Y   +D    
Sbjct: 2   DTIAAISTPMGEGAIAIVRLSGPEAIQIADKIYKGPKGKTLSSVESHTIHYGHIVDRPSD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R++++ ++ V  +P +FT ED  E + HGGI  VN +L+ LA     RLA PGEF++RAF
Sbjct: 62  RVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    ++M  M G LS+L  +   ++    + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRSEILETLAHVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     +K +I + +   + G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEYDDVEEMTHQILVEKATAVKKEIEALLRTSEQGKILREGLSTVIIGRPNVGKSSLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 241 LVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300

Query: 299 ADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHLI 343
           ADLILL+   + +      K     + +D I I  K+DL +    E              
Sbjct: 301 ADLILLVLNYSEELSEEDVKLFEAVEGMDVIVILNKTDLEAKIDTERVRELANGRPVVTT 360

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG+ +L   I+S+      +    +  S+ RH+  L Q  R +E A S  E+D  
Sbjct: 361 SLLKEEGINDLEEAIQSLFYTGAIESGDLTYVSNTRHISILQQAKRAIEDALSGIEQDVP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 421 IDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 459


>gi|90408840|ref|ZP_01216982.1| thiophene and furan oxidation protein ThdF [Psychromonas sp. CNPT3]
 gi|90310067|gb|EAS38210.1| thiophene and furan oxidation protein ThdF [Psychromonas sp. CNPT3]
          Length = 455

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 158/458 (34%), Positives = 244/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI A +T      + IIR+SGP    V + I   K P  R A    F    G +
Sbjct: 1   MTKVTDTIVAQATATGRGGVGIIRVSGPDVELVAKHILG-KLPKVRYAEYLPFMDDKGEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F +P SFTGED  E   HGG  V++ +++ +  + NLR A PGEFS RAF N
Sbjct: 60  LDQGIALFFKAPHSFTGEDVLELQGHGGPIVMDMLIQAILTIKNLRGAAPGEFSERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + GE S+     ++ L H+R ++EA +DF E
Sbjct: 120 DKMDLAQAEAIADLIEATSEQAARSALHSLQGEFSNKINALVESLIHLRIYVEASIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+V   S  ++ +D+  +  ++ S   + + G I+R+G K+VI G  NAGKSSL N+L 
Sbjct: 180 -EEVDFLSDGKIASDLAQIVANLESVKKEAQQGAILRDGMKVVIAGRPNAGKSSLLNSLV 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVT+I GTTRDV+   + ++G  + I DTAG+RE+ D VEK GI+R + E++ AD
Sbjct: 239 GADRAIVTEIAGTTRDVMREYIHIDGMPLHIIDTAGLRESADEVEKIGIERAWKEIKTAD 298

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL--YSTYTEEYDHLI---- 343
            +L + +  +                 P+++    +  K+DL   S   +E +       
Sbjct: 299 RVLFMLDATTTDSTDPYAIWPDFMKQLPESVGLTVVRNKADLTGESVLVKEGNQYPVYSL 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TG G++ L   +K  +            + +RHL  L     +L    +  ++    
Sbjct: 359 SAKTGLGMQALKEHLKESM-GYTGSTGGGFMARRRHLEALDNAQHHLLEGKVQLEEYKAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+    L  ITG    + LL  IFS FCIGK
Sbjct: 418 ELLAEELRITQQYLSDITGAFSSDDLLGKIFSSFCIGK 455


>gi|55822936|ref|YP_141377.1| tRNA modification GTPase TrmE [Streptococcus thermophilus CNRZ1066]
 gi|116627781|ref|YP_820400.1| tRNA modification GTPase TrmE [Streptococcus thermophilus LMD-9]
 gi|81559421|sp|Q5LZW3|MNME_STRT1 RecName: Full=tRNA modification GTPase mnmE
 gi|122267622|sp|Q03KR8|MNME_STRTD RecName: Full=tRNA modification GTPase mnmE
 gi|55738921|gb|AAV62562.1| thiophene and furan oxidation protein [Streptococcus thermophilus
           CNRZ1066]
 gi|116101058|gb|ABJ66204.1| tRNA modification GTPase trmE [Streptococcus thermophilus LMD-9]
 gi|312278338|gb|ADQ62995.1| tRNA modification GTPase mnmE [Streptococcus thermophilus ND03]
          Length = 456

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 144/456 (31%), Positives = 250/456 (54%), Gaps = 18/456 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI I+RLSG     +   + K K       S    +G    +
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDAIAIANKVFKGKN-LETVDSHTINYGHIVEN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ ++ V  +P++FT ED  E + HGG+AV N IL+ L +    R+A PGEF++RA
Sbjct: 62  NEIIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIRS-GARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLI ++T+    +++  + G L +L      ++ +  + +E ++D
Sbjct: 121 FLNGRIDLTQAEAVMDLIRAKTDKAMTVAVSQLDGSLKNLINNTRQEILNTLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++  V       +  + + ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 181 YPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDD+VEK G++R+   +E
Sbjct: 241 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALE 300

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY-TEEYD---HLISSFT 347
            ADL+LL+   +       +  +   +N + I +  K+DL     TEE       IS   
Sbjct: 301 EADLVLLVLNSSEPLTDQDRTLLDISQNSNRIILLNKTDLPQAIQTEELPEDLIPISVLK 360

Query: 348 GEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDI 404
            E ++++ ++I  +  +     +   +  S+ RH+  + + +  LE      E    +D+
Sbjct: 361 NENIDKIEDRINQLFFDNAGLVEKDATYLSNARHISLIEKALESLEAVNQGLELGMPVDL 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456


>gi|328958785|ref|YP_004376171.1| tRNA modification GTPase MnmE [Carnobacterium sp. 17-4]
 gi|328675109|gb|AEB31155.1| tRNA modification GTPase MnmE [Carnobacterium sp. 17-4]
          Length = 462

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 149/463 (32%), Positives = 239/463 (51%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL--- 56
           M  E ETI A+ST     AI I+RLSG    ++ + + K   K    + S    +G    
Sbjct: 1   MTLEFETIAAISTPPGEGAIGIVRLSGEQAIEIADRVYKSGSKALAEQKSHTIHYGHIEN 60

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                 +D+ ++ V   P++FT ED  E + HGGI  VN +L+        RLA PGEF+
Sbjct: 61  PKTNETIDEVMVSVMREPKTFTREDVVEINCHGGITSVNQVLQ-CVLQNGARLAEPGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG+IDL +AE++ DLI ++T+    ++++ + G LS+L       +    + +E 
Sbjct: 120 KRAFLNGRIDLSQAEAVMDLIRAKTDRAMHVALKQLDGNLSNLIRNLRLDILDTLAQVEV 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  +SK ++     +K  I   +     G+I+R+G    I+G  N GKSS
Sbjct: 180 NIDYPEYDDVEEMTSKLLIEKAKLVKASIQQLLETASQGKILRDGLATAIIGRPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIVTDI GTTRDV+   + ++G  +K+ DTAGIRET+DI+E+ G++R+  
Sbjct: 240 LLNYLLDEEKAIVTDIAGTTRDVIEEYISVKGVPLKLVDTAGIRETEDIIERIGVERSRQ 299

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYST---------YTEEY 339
            + +ADL+LL+        I  K  I        I I  K DL +             E 
Sbjct: 300 ALSDADLVLLVFNQSEPLTIEDKALIEATSQHHRIIILNKMDLPNKLDLTELEVLVDPES 359

Query: 340 DHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
               S  +  G++ L  KI ++    +  +   +  S+ RH+  L+     L+      E
Sbjct: 360 IVKTSILSKSGVDVLEKKIAALFFTGQTGERDATYVSNVRHIALLNDAEEALDEVINGVE 419

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D+I  ++      LG+ITG    ++LL  +FS+FC+GK
Sbjct: 420 AGMPVDLIQIDMTRCWDLLGEITGDSVQDELLTQLFSQFCLGK 462


>gi|212211699|ref|YP_002302635.1| tRNA modification GTPase TrmE [Coxiella burnetii CbuG_Q212]
 gi|212010109|gb|ACJ17490.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Coxiella burnetii CbuG_Q212]
          Length = 473

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 160/457 (35%), Positives = 249/457 (54%), Gaps = 22/457 (4%)

Query: 1   MNHEK-ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           M +   ETI A +T +    I ++R+SG     + + I     P PR A+   F    G 
Sbjct: 22  MTYVFPETIAAQATPSGRGGIGVVRVSGEKTKAIAQKILG-CVPKPRYATFVKFRD-SGS 79

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+G+ + FP P SFTGED  E H HGG  V++ +L  + K    R A PGEFS RAF 
Sbjct: 80  VIDEGISLYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKA-GARQARPGEFSERAFL 138

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N KIDL +AE++ADLI++ +E   R +M  + GE S    Q +D L  +R +IEA +DF 
Sbjct: 139 NNKIDLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFP 198

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E E++   + + +   +  L + +       K G ++R G  +VI G  N GKSSL N L
Sbjct: 199 E-EEIDFLADERIKETLENLTHQVQEIEKTAKQGALLREGITVVIAGEPNVGKSSLLNLL 257

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           + ++ AIVTDI GTTRD++   + ++G  + + DTAG+R T+D+VEKEG++RT   V+ A
Sbjct: 258 SGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLTEDVVEKEGVRRTQKAVQQA 317

Query: 300 DLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLY----STYTEEYDHLI-S 344
           DL+LL+ + +   E                I  + +  K DL         +EY H+  S
Sbjct: 318 DLLLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIVENKIDLIGEAPRKENKEYPHIKLS 377

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLD 403
             T  G+E L N +K+    +      +  + +RH   +++   +L+ A+ +  +    +
Sbjct: 378 VKTRAGVELLKNHLKNTAGFEATH-ENNFIARRRHCDAIARASAFLKNANNHLLNQKAGE 436

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+L+LA  +L +ITG    + LL  IFS+FCIGK
Sbjct: 437 LVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 473


>gi|312862786|ref|ZP_07723026.1| tRNA modification GTPase TrmE [Streptococcus vestibularis F0396]
 gi|311101646|gb|EFQ59849.1| tRNA modification GTPase TrmE [Streptococcus vestibularis F0396]
          Length = 456

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 142/456 (31%), Positives = 246/456 (53%), Gaps = 18/456 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI I+RLSG     +   + K K       S    +G    +
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDAVAIANKVFKGKN-LESVTSHTINYGHIVEN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ ++ V  SP++FT ED  E + HGG+AV N IL+ L +    R+A PGEF++RA
Sbjct: 62  DETIDEVMVSVMRSPKTFTREDVVEINTHGGVAVTNEILQLLIRS-GARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G L  L      ++ +  + +E ++D
Sbjct: 121 FLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++  V       +  + + ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 181 YPEYDDVEEVTTALVREKTQDFQALLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDD+VEK G++R+   +E
Sbjct: 241 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALE 300

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            ADL+LL+   +       +  +   KN + I +  K+DL          E    IS   
Sbjct: 301 EADLVLLVLNSSEPLTEQDRTLLEISKNSNRIILLNKTDLPQAIQMEELPEDVIPISVLK 360

Query: 348 GEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDI 404
            E ++++ ++I  +  +     +   +  S+ RH+  + + +  LE      E    +D+
Sbjct: 361 NENIDKIEDRINQLFFDNAGLVEKDATYLSNARHISLIERALESLEAVNQGLELGMPVDL 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456


>gi|87122923|ref|ZP_01078788.1| tRNA modification GTPase [Marinomonas sp. MED121]
 gi|86161796|gb|EAQ63096.1| tRNA modification GTPase [Marinomonas sp. MED121]
          Length = 460

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 244/456 (53%), Gaps = 23/456 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           +K+TI A +T      + IIRLSGP    + E +   K P  R A    F   +G  +D 
Sbjct: 9   DKDTIAAQATPPGRGGVGIIRLSGPLSLSIAEQVLGFK-PTARHAHYGPFKDAEGEQIDL 67

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ I FP+P SFTGED  E   HGG  +++ +L  + ++   RLA PGEFS RAF N K+
Sbjct: 68  GIAIYFPNPNSFTGEDVIELQGHGGPVIIDMLLSRVLEL-GARLARPGEFSERAFLNDKM 126

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI S +    + ++  + G  S    + ++ L H+R ++EA +DF E E+
Sbjct: 127 DLTQAEAIADLIDSASTQAAKCALRSLQGAFSKRIDELVESLIHLRIYVEAAIDFPE-EE 185

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +      +V ND+  ++ ++ +   + K G IIR G  +VI G  NAGKSSL NAL+ KD
Sbjct: 186 IDFIGDGKVANDLKGIQQNLIAVQKEAKQGAIIREGMNVVIAGRPNAGKSSLLNALSGKD 245

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI+R + E+  AD IL
Sbjct: 246 SAIVTNIEGTTRDVLREQIHIDGMPLHIIDTAGLRDSPDEVEQIGIQRAWQEIHKADRIL 305

Query: 304 LLKEINSKKEISFPKNID------------FIFIGTKSDL------YSTYTEEYDHLISS 345
           L+ +  S    + P +I                +  K DL       +         +S+
Sbjct: 306 LMVDSKSSSNETDPAHIWPEFVAQLANQDNLTLVRNKVDLTTEKVGVTQVNNIPVISLSA 365

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DI 404
              +G+E L   +K ++            + +RH+  L++   +L   SL   D G  ++
Sbjct: 366 KNQDGVELLTQHLKDVMGYD-STTEGGFIARRRHIEALNKASEFLNAGSLQLHDFGAGEL 424

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE+L+ A  +L +ITG    + LL  IF  FCIGK
Sbjct: 425 LAEDLKEAQNALSEITGAFTSDDLLGRIFGSFCIGK 460


>gi|261250646|ref|ZP_05943221.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio orientalis
           CIP 102891]
 gi|260939215|gb|EEX95202.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio orientalis
           CIP 102891]
          Length = 453

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 162/455 (35%), Positives = 244/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   +V   +  K+   PR A    F   DG  LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPLAAKVALEVTGKEL-RPRYAEYLPFTAEDGAQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ + K+  +R A PGEFS RAF N K+
Sbjct: 61  GIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILKISGIRTARPGEFSERAFLNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G  S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVAADLQTIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEITQADRVL 299

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSF 346
            +      +    KEI        P NI    I  K+D            +     +S+ 
Sbjct: 300 FMVDGTTTDATDPKEIWPDFVDRLPNNIGMTVIRNKADQTGEDLGICHVNDPTLIRLSAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TGEG+E L   +K  +            + +RHL  L     +L++     E     +I+
Sbjct: 360 TGEGVEALRTHLKECM-GFAGGHEGGFMARRRHLEALESASDHLDIGQQQLEGYMAGEIL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   L +ITG    + LL  IF+ FCIGK
Sbjct: 419 AEELRIAQQHLSEITGEFSSDDLLGRIFTSFCIGK 453


>gi|160877621|ref|YP_001556937.1| tRNA modification GTPase TrmE [Shewanella baltica OS195]
 gi|189036207|sp|A9KX19|MNME_SHEB9 RecName: Full=tRNA modification GTPase mnmE
 gi|160863143|gb|ABX51677.1| tRNA modification GTPase TrmE [Shewanella baltica OS195]
 gi|315269820|gb|ADT96673.1| tRNA modification GTPase TrmE [Shewanella baltica OS678]
          Length = 453

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/455 (35%), Positives = 253/455 (55%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P  R A    F    G+++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRISGDKASDVAMAVLG-HLPKTRYADYCDFKSASGQVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+
Sbjct: 61  GIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S    + +D++T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++ N +  + + +    +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T+D VE+ GI+R + E+ +AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTNDTVEQIGIERAWNEINSADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYD---HLISSF 346
            + +  +   +             P N+    I  K+DL       TEE     + IS+ 
Sbjct: 300 FMVDGTTTAAVDPHTIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++
Sbjct: 360 TGLGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|332971197|gb|EGK10160.1| tRNA modification GTPase TrmE [Desmospora sp. 8437]
          Length = 458

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/459 (35%), Positives = 246/459 (53%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST    + I++IR+SGP   +V + I + KK      S    +G       G
Sbjct: 2   ETDTIAAISTPVGEAGIAVIRVSGPEAIRVADRIYRGKKSLRDAESHTVHYGTIVNSGQG 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+ V  SP +FT ED  E   HGG+  V  +LEE+      RLA PGEF++RAF
Sbjct: 62  NPIDEVLVTVMRSPRTFTREDVVEISCHGGMVPVQAVLEEVLSA-GARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI S+T+   R++M+   G LS L  Q   ++    + +  ++D+
Sbjct: 121 LNGRIDLSQAEAVIDLIRSKTDRAARVAMQQAEGRLSGLIQQLRREILETLAHLAVNVDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D +  + + +L     ++  I+  +   + G+I R G   VI+G  N GKSSL NA
Sbjct: 181 PEY-DAEQLTEEIMLKKSRGIEERINHLLQTARQGKIYREGIGTVIVGRPNVGKSSLLNA 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA+++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+D+VE+ G++R+   +E 
Sbjct: 240 LARENKAIVTDIPGTTRDVIEEYVNVRGIPLRLVDTAGIRETEDVVERIGVERSHQALEG 299

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDHLI 343
           ADLILLL         + +K +   +N   I +  K DL              E      
Sbjct: 300 ADLILLLLNHGESLSEDDRKLLKMVRNQTVIVVVNKMDLPRRLDLQEVRNLIGEAPLITT 359

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCG 401
           S    +G++ L   I  + L  K      +  S+ RH+  L Q  + +  A    E    
Sbjct: 360 SMIREQGIDPLEEAIVDLFLGGKAVAADATYVSNARHISLLKQAAQQVRDAIEGIEAGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD++  +L+ A  SLG+I G    E L+D IFS+FC+GK
Sbjct: 420 LDMVEIDLKNAWQSLGEIIGDAVAEDLIDQIFSQFCLGK 458


>gi|55821017|ref|YP_139459.1| tRNA modification GTPase TrmE [Streptococcus thermophilus LMG
           18311]
 gi|81560616|sp|Q5M4H3|MNME_STRT2 RecName: Full=tRNA modification GTPase mnmE
 gi|55737002|gb|AAV60644.1| thiophene and furan oxidation protein [Streptococcus thermophilus
           LMG 18311]
          Length = 456

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 144/456 (31%), Positives = 250/456 (54%), Gaps = 18/456 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI I+RLSG     +   + K K       S    +G    +
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDAIAIANKVFKGKN-LETVDSHTINYGHIVEN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ ++ V  +P++FT ED  E + HGG+AV N IL+ L +    R+A PGEF++RA
Sbjct: 62  NEIIDEVMVSVMRAPKTFTREDVVEVNTHGGVAVTNEILQLLIRS-GARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLI ++T+    +++  + G L +L      ++ +  + +E ++D
Sbjct: 121 FLNGRIDLTQAEAVMDLIRAKTDKAMTVAVSQLDGSLKNLINNTRQEILNTLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++  V       +  + + ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 181 YPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDD+VEK G++R+   +E
Sbjct: 241 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALE 300

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY-TEEYD---HLISSFT 347
            ADL+LL+   +       +  +   +N + I +  K+DL     TEE       IS   
Sbjct: 301 EADLVLLVLNSSEPLTDQDRTLLDISQNSNRIILLNKTDLPQAIQTEELPEDLIPISVLK 360

Query: 348 GEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDI 404
            E ++++ ++I  +  +     +   +  S+ RH+  + + +  LE      E    +D+
Sbjct: 361 NENIDKIEDRINQLFFDNAGLVEKDATYLSNARHISLIEKALESLEAVNQGLELGMPVDL 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456


>gi|294648709|ref|ZP_06726169.1| tRNA modification GTPase TrmE family protein [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292825384|gb|EFF84127.1| tRNA modification GTPase TrmE family protein [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 454

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 169/457 (36%), Positives = 262/457 (57%), Gaps = 23/457 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M H+  TI A++T      + +IRLSG   + + E + +K+ P  R A+ R F+ +D  +
Sbjct: 4   MQHQT-TIAAIATPLGRGGVGVIRLSGSKAYMIAEQLTQKQLPNARMAAFRQFYDVDNSV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+++ FP+P SFTGED  E   HGG  + N +L  L  +     A  GEFS RAFEN
Sbjct: 63  MDEGIILCFPNPHSFTGEDVVEIQGHGGPVIQNALLARLLDL-GATAAKAGEFSMRAFEN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF E
Sbjct: 122 GKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +  ++L  +  +++ + +     + G+++R G ++VI G  NAGKSSL NALA
Sbjct: 182 -EEIDFLADGKILALLDDVQDSVKAVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTDI GTTRDVL   + L G  + ++DTAG+RET D+VE+EGI+R   E+E AD
Sbjct: 241 GHERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEREGIRRAIKEIEQAD 300

Query: 301 LILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISS 345
           L+LL+ ++N   E             +    + IG K DL     E  D+       +S+
Sbjct: 301 LLLLVYDLNQGDEPLQLAHEYFADHLEPKRLLLIGNKCDLTGQPAEMTDYQGFRHIRVSA 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403
               G++ LI+ I +     F+    +  +  RHL  + +T RYL  A   L   + G +
Sbjct: 361 KQDMGVQALIDAITA--HAGFQPEEDTFIARTRHLDAMKRTQRYLSEAREQLVVFNAG-E 417

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 418 LVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|212217715|ref|YP_002304502.1| tRNA modification GTPase TrmE [Coxiella burnetii CbuK_Q154]
 gi|212011977|gb|ACJ19357.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Coxiella burnetii CbuK_Q154]
          Length = 473

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/457 (35%), Positives = 249/457 (54%), Gaps = 22/457 (4%)

Query: 1   MNHEK-ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           M +   ETI A +T +    I ++R+SG     + + I     P PR A+   F    G 
Sbjct: 22  MTYVFPETIAAQATPSGRGGIGVVRVSGEKTKAIAQKILG-CVPKPRYATFVKFRD-SGS 79

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+G+ + FP P SFTGED  E H HGG  V++ +L  + K    R A PGEFS RAF 
Sbjct: 80  VIDEGIALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKA-GARQARPGEFSERAFL 138

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N KIDL +AE++ADLI++ +E   R +M  + GE S    Q +D L  +R +IEA +DF 
Sbjct: 139 NNKIDLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFP 198

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E E++   + + +   +  L + +       K G ++R G  +VI G  N GKSSL N L
Sbjct: 199 E-EEIDFLADERIKETLENLTHQVQEIEKTAKQGALLREGITVVIAGEPNVGKSSLLNLL 257

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           + ++ AIVTDI GTTRD++   + ++G  + + DTAG+R T+D+VEKEG++RT   V+ A
Sbjct: 258 SGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLTEDVVEKEGVRRTQKAVQQA 317

Query: 300 DLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLY----STYTEEYDHLI-S 344
           DL+LL+ + +   E                I  + I  K DL         +EY H+  S
Sbjct: 318 DLLLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIIENKIDLIGEAPRKENKEYPHIKLS 377

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLD 403
             T  G+E L N +K+    +      +  + +RH   +++   +L+ A+ +  +    +
Sbjct: 378 VKTRAGVELLKNHLKNTAGFEATH-ENNFIARRRHCDAIARASAFLKNANNHLLNQKAGE 436

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+L+LA  +L +ITG    + LL  IFS+FCIGK
Sbjct: 437 LVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 473


>gi|261868617|ref|YP_003256539.1| tRNA modification GTPase TrmE [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413949|gb|ACX83320.1| tRNA modification GTPase TrmE [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 451

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 162/453 (35%), Positives = 252/453 (55%), Gaps = 20/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + +   K P PR A    F   DG +LD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPKAIEVAQAVLG-KCPKPRMADYLSFKEADGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F  P SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIEGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   +    ++ K G I+R G K+VI G  NAGKSSL N LA ++ 
Sbjct: 180 DFLADGKIEGHLNDIIAQLDKVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNTLAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + L+G  + I DTAG+R+  D VE+ GI R + E+E AD ILL
Sbjct: 240 AIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDATDEVERIGISRAWHEIEQADRILL 299

Query: 305 LKEINSKKE----------ISFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTG 348
           + + +  ++             P NI    I  K+DL       Y+        +S+ T 
Sbjct: 300 MLDSSDTEQDLAKVRSEFLAKLPNNIPLTIIRNKADLSGEAERLYEEDGYTVVNLSAKTQ 359

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAE 407
           +G++ L + +K  +  +   +     + +RHL  L    R+L+M  +        +++AE
Sbjct: 360 QGVDLLRDHLKQAMGYQTG-MEGGFLARRRHLEALELAARHLQMGHVQLTQFHAGELLAE 418

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 419 ELRMVQSALSEITGQFTSDDLLTNIFSSFCIGK 451


>gi|153002874|ref|YP_001368555.1| tRNA modification GTPase TrmE [Shewanella baltica OS185]
 gi|166234820|sp|A6WUK3|MNME_SHEB8 RecName: Full=tRNA modification GTPase mnmE
 gi|151367492|gb|ABS10492.1| tRNA modification GTPase TrmE [Shewanella baltica OS185]
          Length = 453

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/455 (35%), Positives = 252/455 (55%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P  R A    F    G+++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRISGDKASDVAMAVLG-HLPKTRYADYCDFKSASGQVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+
Sbjct: 61  GIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S    + +D++T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++ N +  + + +    +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYD---HLISSF 346
            + +  +   +             P N+    I  K+DL       TEE     + IS+ 
Sbjct: 300 FMVDGTTTAAVDPHTIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++
Sbjct: 360 TGLGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|330831723|ref|YP_004394675.1| tRNA modification GTPase mnmE [Aeromonas veronii B565]
 gi|328806859|gb|AEB52058.1| tRNA modification GTPase mnmE [Aeromonas veronii B565]
          Length = 453

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 166/453 (36%), Positives = 248/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SGP+  QV   I   K P  R A    F    G++LD+G+
Sbjct: 4   DTIVAQATAPGRGGVGIVRVSGPAAEQVAG-IVLGKLPRVRYAEYLPFRDEQGQVLDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            ++F +P SFTGED  E   HGG  +++ ++  + K+  +R A PGEFS RAF N K+DL
Sbjct: 63  ALLFKAPNSFTGEDVLELQGHGGPVIMDMLIRRILKIDGIRPARPGEFSERAFINDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R +M  + G+ SS   Q ++ L  +R ++EA +DF + E++ 
Sbjct: 123 AQAEAIADLIEASSEQAARSAMHSLQGQFSSKIQQLVESLIRLRIYVEAAIDFPD-EEID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  +V  D+  + +++     + K G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 182 FLSDGKVAGDLYAIMSELDDVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGRESA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+E AD +L +
Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDKVEQIGIERAWAEIEQADRVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTG 348
            +  +   +             PKNI    I  K+DL       S       + IS+ T 
Sbjct: 302 VDGTTTDAVDPREIWPEFVDRLPKNIGLTVIRNKADLTGEDLAPSQELGHAVYRISAKTE 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            GL  L   +K+ +  +         + +RHL  L +    L +A    E     +++AE
Sbjct: 362 LGLPALREHLKACMGFQ-GNTEGGFMARRRHLDALERAAERLLVAKEQLEVFVAGELVAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453


>gi|238783044|ref|ZP_04627071.1| tRNA modification GTPase mnmE [Yersinia bercovieri ATCC 43970]
 gi|238716045|gb|EEQ08030.1| tRNA modification GTPase mnmE [Yersinia bercovieri ATCC 43970]
          Length = 482

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/453 (35%), Positives = 245/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +   V + +   K P PR A    F  +DG  LD+G+
Sbjct: 33  DTIVAQATPPGRGGVGILRVSGRAAAAVAQAVLG-KLPKPRYADYLPFKDVDGSTLDQGI 91

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 92  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 151

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF + E++ 
Sbjct: 152 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPD-EEID 210

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  ++    ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 211 FLSDGKIEGQLNGVMAELEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 270

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 271 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFM 330

Query: 306 KEINSKKE-----------ISFPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348
            +  +                 P  +    +  K+D+       TE   H    +S+ TG
Sbjct: 331 VDGTTTDATEPAAIWPEFMARLPSTLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 390

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAE 407
           EG++ L N +K  +            + +RHL  L    ++L             +++AE
Sbjct: 391 EGIDLLRNHLKQSM-GFTSNTEGGFLARRRHLQALETAAQHLVQGHEQLVSAYAGELLAE 449

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 450 ELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 482


>gi|311032250|ref|ZP_07710340.1| tRNA modification GTPase TrmE [Bacillus sp. m3-13]
          Length = 462

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 157/462 (33%), Positives = 254/462 (54%), Gaps = 25/462 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGL---- 56
           +E +TI A+ST     AI+I+RLSG   F++ + I      K     AS    +G     
Sbjct: 2   YEFDTIAAISTPMGEGAIAIVRLSGEEAFRIIDEIFVTPSSKKMKDVASHTIHYGHIVDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
              +I+++ ++ V   P++FT ED  E + HGG+  VN +L+ L      RLA PGEF++
Sbjct: 62  KTDKIIEEVMVSVMRGPKTFTREDVVEINCHGGLVSVNKLLQ-LVLSRGARLAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    +++  M G LS L  +   ++    + +E +
Sbjct: 121 RAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMEGRLSKLIQKLRQEILETLAHVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  + + +L    ++K ++   +   + G+I+R G   VI+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTHQLLLEKSTYVKEELEKLLQTSQQGKILREGLSTVIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N+L  ++ AIVTDIPGTTRDV+   + + G  +++ DTAGIRET+DIVE+ G++R+   
Sbjct: 241 LNSLVHENKAIVTDIPGTTRDVIEEYVSVRGVPLRLVDTAGIRETEDIVERIGVERSREV 300

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY-----TEEYDHL-- 342
           ++ ADLILL+   N       K+     K +D I I  K+DL +        E  +H   
Sbjct: 301 LKKADLILLVLNNNDDLTMEDKQLFEAVKGMDVIVIVNKTDLPTKIDIGQVKELANHHTV 360

Query: 343 --ISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
              S    +G++EL   I S+      +    +  S+ RH+  ++Q  + LE A +  E 
Sbjct: 361 ISTSLKEEQGIDELEEAISSMFFQGDLEAGDMTYVSNSRHIGLITQAQQALEDAIVGMES 420

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +DI+  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 421 GVPIDIVQIDLTRTWEILGEIIGDAVHESLIDQLFSQFCLGK 462


>gi|50086618|ref|YP_048128.1| tRNA modification GTPase TrmE [Acinetobacter sp. ADP1]
 gi|81392037|sp|Q6F6L1|MNME_ACIAD RecName: Full=tRNA modification GTPase mnmE
 gi|49532592|emb|CAG70306.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Acinetobacter sp. ADP1]
          Length = 462

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 167/456 (36%), Positives = 257/456 (56%), Gaps = 21/456 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M ++  TI A++T      + +IRLSGP    + E +  K  P  R A  R F+  +G +
Sbjct: 12  MQYQT-TIAAIATPPGRGGVGVIRLSGPKASLIAEHLTAKTLPAARMAGFRQFYDAEGLV 70

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GL++ FP+P SFTGED  E   HGG  + N +LE L ++   + A  GEFS RAFEN
Sbjct: 71  MDEGLVLYFPNPNSFTGEDVVELQGHGGPVIQNALLERLFEL-GAKAAKAGEFSMRAFEN 129

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL++AE++ADLI + ++   R ++  + G  S    Q ++KL H+R  +EA +DF E
Sbjct: 130 GKLDLVQAEAIADLIDATSQAAARSAVRSLQGAFSLRINQVLEKLIHLRLHVEAAIDFPE 189

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +  ++L  +  +++ +    +  + G+++R G ++VI G  NAGKSSL NALA
Sbjct: 190 -EEIDFLADGKILALLDDVRDSVQQVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALA 248

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E AD
Sbjct: 249 GNERAIVTDIAGTTRDVLHERISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQAD 308

Query: 301 LILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SS 345
           L+LL+ +++   +             +    I IG K DL + + E   +        S+
Sbjct: 309 LLLLVYDLSEGADPLALAQEYFAEHLEPRRLILIGNKCDLMTGHPELAQYQNFRHVTVSA 368

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDI 404
               G++ LI+ I +     F+    +  +  RHL  + +T  +L  A          ++
Sbjct: 369 KMDMGVQALIDAITA--HAGFQPEEDTFIARTRHLDAMKRTQLHLHEAREQLVVFHAGEL 426

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE+LRLA  +L +ITG    + LL  IF  FCIGK
Sbjct: 427 VAESLRLAQNALSEITGEFSADDLLGKIFGSFCIGK 462


>gi|195978293|ref|YP_002123537.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974998|gb|ACG62524.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 458

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + I K K      AS    +G     
Sbjct: 3   ITKEFDTIAAISTPLGEGAIGIVRLSGTKALDIAKSIFKGKD-LTTVASHTLNYGHIIKP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G ++D+ ++ V  +P++FT ED  E + HGGIAV N IL+ L K    R+A PGEF++
Sbjct: 62  STGEVIDEVMVSVMLAPKTFTREDVIEINTHGGIAVTNDILQLLIK-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRIDLTQAEAVMDLIRAKTDKAMSIAIKQLDGSLSQLISDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  + +     +  +   +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLRDKTQEFQALLEQLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISS 345
           ++ ADL+LL+   +       K  ++  ++ + I +  K+DL     +    E    IS 
Sbjct: 301 LQEADLVLLVLNASEKLTEQDKALLALSQDSNRIILLNKTDLDQVIEKDQLPEEAIPISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++ + ++I  +  +     +   +  S+ RH+  + Q V+ LE  +        +
Sbjct: 361 LQNQNIDLIEDRINQLFFDHTGLIEQDATYLSNARHISLIEQAVQSLEAVNEGLALGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L  A   LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQIDLTRAWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|332687269|ref|YP_004457043.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Melissococcus
           plutonius ATCC 35311]
 gi|332371278|dbj|BAK22234.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Melissococcus
           plutonius ATCC 35311]
          Length = 466

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 146/459 (31%), Positives = 251/459 (54%), Gaps = 25/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGR 59
           +TI A+ST     AISI+RLSG    ++ + I +   K     A+    +G        +
Sbjct: 9   DTIAAISTPPGEGAISIVRLSGKDAVKIADKIYQAGNKKLKDVATHTIHYGHIIDPKKNK 68

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ ++ V  +P++FT ED  E + HGG+ VVN +L+ L      RLA PGEF++RAF 
Sbjct: 69  VVDEVMVSVMRAPKTFTCEDVVEINCHGGMIVVNKLLQ-LILHEGARLAEPGEFTKRAFL 127

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI S+T+    +++  + G LS+L      ++    + +E ++D+ 
Sbjct: 128 NGRIDLSQAEAVMDLIRSKTDKAMSMALNQLDGSLSNLIRSLRQEILETLAQVEVNIDYP 187

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +++ +L     +K  I   +   + G+I+R G   VI+G  N GKSSL N L
Sbjct: 188 EYDDVEELTTRLLLEKATSVKKQIQQLLMTAQQGKILREGLSTVIVGRPNVGKSSLLNHL 247

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K++ AIVTD+ GTTRD +   ++L G  +K+ DTAGI ET+DIVEK G++++   ++ A
Sbjct: 248 LKEEKAIVTDVAGTTRDTIEEYINLRGIPLKLVDTAGIHETEDIVEKIGVEKSRQALQTA 307

Query: 300 DLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI---------- 343
           DLI+L+   + +      + +     +  I +  K DL +   +E               
Sbjct: 308 DLIVLVLNQSEELTNEDQQLLEMTGGLKRIILLNKMDLPNQLEKEKLRSFLSDQEELLPV 367

Query: 344 SSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCG 401
           S  + EG+++L  +I ++  N   +    +  S+ RH+Y L Q +  L+      EK+  
Sbjct: 368 SVLSSEGIDKLEIEIANLFFNGQTEAKDATYLSNTRHIYLLEQALSALDEVIHGIEKEMP 427

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 428 VDLVQIDMTRCWDFLGEIVGDSVQDELITQLFSQFCLGK 466


>gi|257417403|ref|ZP_05594397.1| tRNA modification GTPase [Enterococcus faecalis AR01/DG]
 gi|257159231|gb|EEU89191.1| tRNA modification GTPase [Enterococcus faecalis ARO1/DG]
          Length = 465

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 146/462 (31%), Positives = 251/462 (54%), Gaps = 24/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL---- 56
             E +TI A+ST     AISI+RLSG     +   + +   K   +  +    +G     
Sbjct: 5   TMEFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDP 64

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            + +++D+ +L V  +P++FT ED  E + HGGI VVN +  +L      R+A PGEF++
Sbjct: 65  QNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQL-LQLLLREGARMAEPGEFTK 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E +
Sbjct: 124 RAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVN 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL
Sbjct: 184 IDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSL 243

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   
Sbjct: 244 LNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKA 303

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYST---------YTEEYD 340
           + ++DLILL+   + K      + +   K +  + +  K DL +             E  
Sbjct: 304 LADSDLILLVLNQSEKLTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363

Query: 341 HLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEK 398
             +S  +  GL++L  KI  +    +  +   +  S+ RH+  L Q    L E+ +  E 
Sbjct: 364 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEVINGIEA 423

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 424 GMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|304385851|ref|ZP_07368195.1| tRNA modification GTPase TrmE [Pediococcus acidilactici DSM 20284]
 gi|304328355|gb|EFL95577.1| tRNA modification GTPase TrmE [Pediococcus acidilactici DSM 20284]
          Length = 486

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 144/462 (31%), Positives = 252/462 (54%), Gaps = 25/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
           + E +TI A+ST      ISIIR+SG +  +V   I + K    + AS    +G      
Sbjct: 27  STEFDTIAAISTPPGEGGISIIRISGVNALKVASQIYRGKD-LAKVASHTINYGHVVDPA 85

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
               +D+ ++ V  +P ++T ED  E + HGGI   N IL+ L    + RLA PGEF+ R
Sbjct: 86  TDEEIDEVMVSVMRAPHTYTKEDVVEINCHGGIVATNRILQ-LILGLDARLAKPGEFTER 144

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+   +++++ + G LS L       +  + + +E ++
Sbjct: 145 AFLNGRIDLSQAEAVMDLIRAKTDQSMKVALDQLDGNLSHLIKNLRQDILDVLAQVEVNI 204

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +    + +K  ++  ++  K G+++R+G    I+GH N GKSS+ 
Sbjct: 205 DYPEYDDVETMTTRLLKEKAIEVKAKVNQLLATAKQGKVLRDGLATAIIGHPNVGKSSIL 264

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTD+ GTTRDV+   ++++G  +K+ DTAGI ET+D VEK G+ R+   +
Sbjct: 265 NHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETEDKVEKIGVDRSRKAL 324

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDH 341
           + ADL++L+ + +       ++ +    N+  I +  K+DL +            E    
Sbjct: 325 QQADLVILVLDSSVPLRDEDRQLLDQTANMQRIVVLNKTDLPTKINLNELQKYASEAEII 384

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASL-NEK 398
             S+    G ++L ++I  +      +   +  + ++ RH+  L QTV  L+      E 
Sbjct: 385 KSSAVAPLGTKDLEDRIAKLFFAGSIENSSNNVMVTNARHIGLLQQTVTALDSVLDGIEA 444

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++  A   LG+ITG    ++LLD +FS+FC+GK
Sbjct: 445 GMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK 486


>gi|29377753|ref|NP_816907.1| tRNA modification GTPase TrmE [Enterococcus faecalis V583]
 gi|227555662|ref|ZP_03985709.1| tRNA modification GTPase TrmE [Enterococcus faecalis HH22]
 gi|257418862|ref|ZP_05595856.1| tRNA modification GTPase [Enterococcus faecalis T11]
 gi|46577423|sp|Q820T0|MNME_ENTFA RecName: Full=tRNA modification GTPase mnmE
 gi|29345221|gb|AAO82977.1| tRNA modification GTPase TrmE [Enterococcus faecalis V583]
 gi|227175215|gb|EEI56187.1| tRNA modification GTPase TrmE [Enterococcus faecalis HH22]
 gi|257160690|gb|EEU90650.1| tRNA modification GTPase [Enterococcus faecalis T11]
 gi|315576168|gb|EFU88359.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0309B]
 gi|315582978|gb|EFU95169.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0309A]
          Length = 465

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 145/462 (31%), Positives = 251/462 (54%), Gaps = 24/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL---- 56
             E +TI A+ST     AISI+RLSG     +   + +   K   +  +    +G     
Sbjct: 5   TMEFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDP 64

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            + +++D+ +L V  +P++FT ED  E + HGGI VVN +  +L      R+A PGEF++
Sbjct: 65  QNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQL-LQLLLREGARMAEPGEFTK 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E +
Sbjct: 124 RAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSTLIRSLRQEILNTLAQVEVN 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL
Sbjct: 184 IDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSL 243

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   
Sbjct: 244 LNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKA 303

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST---------YTEEYD 340
           + ++DLILL+   +       ++ +   K +  + +  K DL +             E  
Sbjct: 304 LADSDLILLVLNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363

Query: 341 HLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEK 398
             +S  +  GL++L  KI  +    +  +   +  S+ RH+  L Q    L E+ +  E 
Sbjct: 364 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEVINGIEA 423

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 424 GMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|225870695|ref|YP_002746642.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. equi 4047]
 gi|225700099|emb|CAW94188.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. equi 4047]
          Length = 458

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 149/458 (32%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + I K K      AS    +G     
Sbjct: 3   ITKEFDTIAAISTPLGEGAIGIVRLSGTKALDIAKSIFKGKD-LTTVASHTLNYGHIIKP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G ++D+ ++ V  +P++FT ED  E + HGGIAV N IL+ L K    R+A PGEF++
Sbjct: 62  STGEVIDEVMVSVMLAPKTFTREDVIEINTHGGIAVTNDILQLLIK-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRIDLTQAEAVMDLIRAKTDKAMSIAIKQLDGSLSQLISDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  + +     +  +   +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLRDKTREFQTLLEQLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISS 345
           ++ ADL+LL+   +       K  ++  ++ + I +  K+DL     +    E    IS 
Sbjct: 301 LQEADLVLLVLNASEKLTEQDKALLALSQDSNRIILLNKTDLEQVIEKDQLPEEAIPISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++ + ++I  I  +     +   +  S+ RH+  + Q V+ LE  +        +
Sbjct: 361 LQNQNIDLIEDRINQIFFDHTGLIEQDATYLSNARHISLIEQAVQSLEAVNEGLALGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L  A   LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQIDLTRAWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|225868377|ref|YP_002744325.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701653|emb|CAW98957.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
           zooepidemicus]
          Length = 458

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + I K K      AS    +G     
Sbjct: 3   ITKEFDTIAAISTPLGEGAIGIVRLSGTKALDIAKSIFKGKD-LTTVASHTLNYGHIIRP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G ++D+ ++ V  +P++FT ED  E + HGGIAV N IL+ L K    R+A PGEF++
Sbjct: 62  STGEVIDEVMVSVMLAPKTFTREDVIEINTHGGIAVTNDILQLLIK-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRIDLTQAEAVMDLIRAKTDKAMSIAIKQLDGSLSQLITNTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  + +     +  +   +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLRDKTQEFQALLEQLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISS 345
           ++ ADL+LL+   +       K  ++  ++ + I +  K+DL     +    E    IS 
Sbjct: 301 LQEADLVLLVLNASEKLTEQDKALLALSQDSNRIILLNKTDLEQVIEKDQLPEEAIPISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++ + ++I  +  +     +   +  S+ RH+  + Q V+ LE  +        +
Sbjct: 361 LQNQNIDLIEDRINQLFFDHTGLIEQDATYLSNARHISLIEQAVQSLEAVNEGLALGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L  A   LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQIDLTRAWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|227518132|ref|ZP_03948181.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0104]
 gi|227074400|gb|EEI12363.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0104]
          Length = 465

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 145/462 (31%), Positives = 251/462 (54%), Gaps = 24/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL---- 56
             E +TI A+ST     AISI+RLSG     +   + +   K   +  +    +G     
Sbjct: 5   TMEFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDP 64

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            + +++D+ +L V  +P++FT ED  E + HGGI VVN +  +L      R+A PGEF++
Sbjct: 65  QNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQL-LQLLLREGARMAEPGEFTK 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E +
Sbjct: 124 RAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVN 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL
Sbjct: 184 IDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSL 243

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   
Sbjct: 244 LNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKA 303

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST---------YTEEYD 340
           + ++DLILL+   +       ++ +   K +  + +  K DL +             E  
Sbjct: 304 LADSDLILLVLNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363

Query: 341 HLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEK 398
             +S  +  GL++L  KI  +    +  +   +  S+ RH+  L Q    L E+ +  E 
Sbjct: 364 LSVSVLSNTGLDQLETKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEVINGIEA 423

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 424 GMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|217975462|ref|YP_002360213.1| tRNA modification GTPase TrmE [Shewanella baltica OS223]
 gi|217500597|gb|ACK48790.1| tRNA modification GTPase TrmE [Shewanella baltica OS223]
          Length = 453

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/455 (35%), Positives = 252/455 (55%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P  R A    F    G+++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRISGDKASDVAMAVLG-HLPKTRYADYCDFKSASGQVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+
Sbjct: 61  GIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S    + +D++T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++ N +  + + +    +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYD---HLISSF 346
            + +  +   +             P N+    I  K+DL       TEE     + IS+ 
Sbjct: 300 FMVDGTTTAAVDPHAIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++
Sbjct: 360 TGLGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|78044593|ref|YP_358878.1| tRNA modification GTPase TrmE [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123577255|sp|Q3AG56|MNME_CARHZ RecName: Full=tRNA modification GTPase mnmE
 gi|77996708|gb|ABB15607.1| tRNA modification GTPase TrmE [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 461

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 166/461 (36%), Positives = 254/461 (55%), Gaps = 27/461 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----D 57
           ++TI A+ST      I I+R+SGP   +  +  FI ++ K   +  S    +G      D
Sbjct: 3   EDTIAAISTPLGEGGIGIVRVSGPGAIEAVKNVFIPRQSKDLSKVPSFTLHYGKIVDPAD 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+I+D+ L+ V  +P+S+TGED  E + HGGI  V  +LE + K   +RLA PGEF++RA
Sbjct: 63  GKIVDEVLVSVMRAPKSYTGEDVVEINCHGGIVAVEKVLELILK-QGIRLAEPGEFTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I ++TE   +L+   +SGEL         K+ +I +FIE  +D
Sbjct: 122 FLNGRIDLSQAEAVIDIIRAKTEASLKLAGRQLSGELREKINAVRQKIINILAFIEVSID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E E     + +  L +I  + ND+   +S  + G I+R G   VI G  N GKSSL N
Sbjct: 182 YPEYE-FDEVTPETALKNIDEIINDVRRLLSSYERGRILREGITAVIAGKPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL +K  AIVTDIPGTTRDV+   L+L+G  VKI DTAGIRET+D+VEK G+++T   + 
Sbjct: 241 ALLRKKRAIVTDIPGTTRDVIEDYLNLKGIPVKIVDTAGIRETEDLVEKLGVEKTREYLN 300

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTE----------EYDH 341
            AD+ L + ++      + +K +S       + +  K DL                +   
Sbjct: 301 QADVTLFVVDVSIGIDEDDEKILSLINKDKSLLVINKIDLLQGKVNFEQYAVKTGIKNFV 360

Query: 342 LISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKD 399
             S+   EGLE L NK+  IL   +  +   ++ S+ RH  +L + +  L  A       
Sbjct: 361 PFSARNFEGLEILENKLYEILIPEQEGEGESALISNLRHKNYLEKALNSLLSAKESIASG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++A +L  A   LG ITG    +++++ IFS+FC+GK
Sbjct: 421 EPVDLVAIDLNEALRELGAITGDALGDEIINEIFSQFCVGK 461


>gi|299772120|ref|YP_003734146.1| tRNA modification GTPase TrmE [Acinetobacter sp. DR1]
 gi|298702208|gb|ADI92773.1| tRNA modification GTPase TrmE [Acinetobacter sp. DR1]
          Length = 451

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 168/455 (36%), Positives = 257/455 (56%), Gaps = 22/455 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
             + TI A++T      + +IRLSGP  +++ + + +K  P  R A  R F+  DG I+D
Sbjct: 2   QSQTTIAAIATPPGRGGVGVIRLSGPKAYEIAQNLTQKNLPEARMAGFRKFYDADGSIMD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAFENGK
Sbjct: 62  EGIVLCFPNPYSFTGEDVVELQGHGGPVIQNALLGRLFEL-GAIAAKAGEFSMRAFENGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF E E
Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPE-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NALA  
Sbjct: 180 EIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E ADL+
Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 299

Query: 303 LLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFT 347
           LL+ ++N   +             +    + IG K DL     E  D        +S+  
Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQLAEINDFQGFRHITVSAKQ 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405
             G++ L+  I +     F     +  +  RHL  + +T  YL  A   L   + G +++
Sbjct: 360 EMGVQGLVEAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLSEAREQLVVFNAG-ELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451


>gi|146295079|ref|YP_001185503.1| tRNA modification GTPase TrmE [Shewanella putrefaciens CN-32]
 gi|166991116|sp|A4YCM1|MNME_SHEPC RecName: Full=tRNA modification GTPase mnmE
 gi|145566769|gb|ABP77704.1| tRNA modification GTPase trmE [Shewanella putrefaciens CN-32]
          Length = 453

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 162/455 (35%), Positives = 255/455 (56%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P  R A    F    G+++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRISGDKATDVAMAVLG-HLPKTRYADYCDFKNATGQVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+
Sbjct: 61  GIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S    + +D++T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++ N +  + + +S+  +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIANALYKIIDKLSTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYD---HLISSF 346
            + +  +   +             P N+    I  K+DL       TEE     + IS+ 
Sbjct: 300 FMVDGTTTDAVDPHDIWPDFINRLPANLGVTVIRNKADLTGENLDMTEEKGYSVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G++EL   +KS++  +   L     + +RHL  L     +L++     E     +++
Sbjct: 360 TGLGVDELKLHLKSLMGYQ-SNLEGGFIARRRHLEALDVAASHLQLGKEQLEVYLAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|242241426|ref|YP_002989607.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech703]
 gi|242133483|gb|ACS87785.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech703]
          Length = 453

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 161/457 (35%), Positives = 249/457 (54%), Gaps = 21/457 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG +   V + +   K P PR A    F   DG +
Sbjct: 1   MSH-SDTIVAQATPPGRGGVGILRISGAAAAAVAQAVLG-KLPRPRHADYLPFRDTDGSV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP+P SFTGED  E   HGG  +++ +L+ +   P++R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPAPNSFTGEDVLELQGHGGPVILDLLLKRILAQPDVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSTHVHQLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  ++ +  +Q + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNDVIANLDAVRAQARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD
Sbjct: 238 GRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSD-----LYSTYTEEYDHLIS 344
            +L + +  +   +             P  +    I  K+D     L           +S
Sbjct: 298 RVLFMVDGTTTDAVEPSAIWPEFMARLPATLPITVIRNKADTTGEPLGMEQNTHTLIRLS 357

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLD 403
           + TG G++ L + +K  +            + +RHL  L Q   +L+            +
Sbjct: 358 ARTGAGVDLLRDHLKQSM-GFTSNTEGGFLARRRHLQALEQAAEHLQQGHEQLVGAYAGE 416

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 417 LLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 453


>gi|332522452|ref|ZP_08398704.1| tRNA modification GTPase TrmE [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313716|gb|EGJ26701.1| tRNA modification GTPase TrmE [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 458

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 140/458 (30%), Positives = 249/458 (54%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     +   + K K      AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALNIANKVFKGKN-LHEVASHTINYGHIINP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +  ILD+ ++ V  +P++FT ED  E + HGGIAV N IL+ L K    R+A PGEF++
Sbjct: 62  ANQEILDEVMVTVMLAPKTFTREDVIEINTHGGIAVTNEILQLLIK-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSELINNTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + +   + G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQALLENLLRTARRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDD+VEK G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDLVEKIGVERSKKA 300

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           ++ ADL+LL+   +       +  +   +  + + +  K+DL      +        IS 
Sbjct: 301 LKEADLVLLVLNASEPLTLQDRTLLELSQESNRLILLNKTDLPERIETDQLPSDFIPISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++ + ++I  +  +     +   +  S+ RH+  + Q ++ L+  +   E    +
Sbjct: 361 LHHKNIDMIEDRINQLFFDNAGLVEQDATYLSNARHISLIEQALQSLQAVNDGLEMGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|315128182|ref|YP_004070185.1| tRNA modification GTPase TrmE [Pseudoalteromonas sp. SM9913]
 gi|315016696|gb|ADT70034.1| tRNA modification GTPase TrmE [Pseudoalteromonas sp. SM9913]
          Length = 454

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 160/455 (35%), Positives = 245/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
            ++TI A +T      + IIR+SG    QV E I   K P  R A    F  L G  LD+
Sbjct: 3   NQDTIAAQATAPGRGGVGIIRVSGSLAKQVAEKIVG-KIPKVRFADYVPFNNLAGDQLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ I F  P SFTGED  E   HGG  V++ +L+E++K+  +RLA PGEFS RAF N K+
Sbjct: 62  GIAIYFAGPHSFTGEDVLELQGHGGPVVLDMLLKEISKIDGVRLAKPGEFSERAFMNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI++ +E   + +++ + G+ S      ++K+ H+R ++EA +DF + E+
Sbjct: 122 DLTQAEAIADLINATSEQAAKSALQSLQGQFSKHIETLVEKVIHLRMYVEAAIDFPD-EE 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  +V  D+  +   +++  +Q K G I+R G ++VI G  NAGKSSL NALA ++
Sbjct: 181 IDFLSDGKVGGDLNAIIEQLNAVTNQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGRE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + ++G  + I DTAG+RE+ D VE+ GI+R + E+  AD +L
Sbjct: 241 AAIVTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRESPDRVEQIGIERAWDEINQADRVL 300

Query: 304 LLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSF 346
            + +     +              P+ +    I  K+DL           +     +S+ 
Sbjct: 301 FMLDGTDTADTDPHAIWPEFMAKLPQGMGVTVIRNKADLSGDVVGMDQEQQYPVISLSAK 360

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
             +G+E +   +K+ +            + +RHL  L     +L+      E     +I+
Sbjct: 361 NADGIELVREHLKACIGFD-GATEGGFMARRRHLDALEHAAYHLDTGKTQLEMHVAGEIL 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 420 AEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454


>gi|298369774|ref|ZP_06981091.1| tRNA modification GTPase TrmE [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282331|gb|EFI23819.1| tRNA modification GTPase TrmE [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 454

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 164/458 (35%), Positives = 256/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  + TI A++T      + +IRLSG +   + + +   K P PR A    F G DG+ 
Sbjct: 1   MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGQP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+L+ F +P SFTGED  E   HGG  V++ +L    ++   R+A PGEF++RAF N
Sbjct: 61  IDNGILLYFAAPASFTGEDVVELQGHGGPVVMDMLLSRCLEL-GARMAQPGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + ++   R+++  + G  S    + +D L  +R  +EA LDF E
Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSRHIHELVDDLITLRMLVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  + + ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 180 -EDIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D+AIVTDI GTTRD +   + L+G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDL-----------YSTYTEEYDHL 342
           + L+L +    +N+K +    S P  +  I I  K+DL            +    +    
Sbjct: 299 VALILIDPREGVNAKTQAILNSLPAGLKKIEIHNKADLTGEPVAVRSGGLAQTGADTVIS 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TG GL+ L + +   +  +  +      +  RHL  L +    LE A+L + +  +
Sbjct: 359 LSAKTGAGLDLLKHALLQEVGWQ-GESESLFLARSRHLNALHEAEAELENAALCDNNQ-I 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ AE+LRLA  +  +ITG    + LL +IFS+FCIGK
Sbjct: 417 ELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454


>gi|229547152|ref|ZP_04435877.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1322]
 gi|255971528|ref|ZP_05422114.1| tRNA modification GTPase [Enterococcus faecalis T1]
 gi|255974478|ref|ZP_05425064.1| tRNA modification GTPase [Enterococcus faecalis T2]
 gi|256761833|ref|ZP_05502413.1| tRNA modification GTPase [Enterococcus faecalis T3]
 gi|256854960|ref|ZP_05560321.1| tRNA modification GTPase mnmE [Enterococcus faecalis T8]
 gi|256957036|ref|ZP_05561207.1| tRNA modification GTPase [Enterococcus faecalis DS5]
 gi|256960899|ref|ZP_05565070.1| tRNA modification GTPase [Enterococcus faecalis Merz96]
 gi|256963961|ref|ZP_05568132.1| tRNA modification GTPase [Enterococcus faecalis HIP11704]
 gi|257078713|ref|ZP_05573074.1| tRNA modification GTPase [Enterococcus faecalis JH1]
 gi|257081326|ref|ZP_05575687.1| tRNA modification GTPase [Enterococcus faecalis E1Sol]
 gi|257083984|ref|ZP_05578345.1| tRNA modification GTPase [Enterococcus faecalis Fly1]
 gi|257087814|ref|ZP_05582175.1| tRNA modification GTPase [Enterococcus faecalis D6]
 gi|257088459|ref|ZP_05582820.1| tRNA modification GTPase [Enterococcus faecalis CH188]
 gi|257421323|ref|ZP_05598313.1| tRNA modification GTPase trmE [Enterococcus faecalis X98]
 gi|293384792|ref|ZP_06630639.1| tRNA modification GTPase TrmE [Enterococcus faecalis R712]
 gi|293388148|ref|ZP_06632672.1| tRNA modification GTPase TrmE [Enterococcus faecalis S613]
 gi|294781227|ref|ZP_06746574.1| tRNA modification GTPase TrmE [Enterococcus faecalis PC1.1]
 gi|300861676|ref|ZP_07107760.1| tRNA modification GTPase TrmE [Enterococcus faecalis TUSoD Ef11]
 gi|307268891|ref|ZP_07550256.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4248]
 gi|307273989|ref|ZP_07555199.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0855]
 gi|307277334|ref|ZP_07558432.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2134]
 gi|307284016|ref|ZP_07564186.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0860]
 gi|307286637|ref|ZP_07566727.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0109]
 gi|307296566|ref|ZP_07576387.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0411]
 gi|312901323|ref|ZP_07760604.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0470]
 gi|312902969|ref|ZP_07762158.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0635]
 gi|312908837|ref|ZP_07767776.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 512]
 gi|312952943|ref|ZP_07771799.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0102]
 gi|312979521|ref|ZP_07791203.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 516]
 gi|229307734|gb|EEN73721.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1322]
 gi|255962546|gb|EET95022.1| tRNA modification GTPase [Enterococcus faecalis T1]
 gi|255967350|gb|EET97972.1| tRNA modification GTPase [Enterococcus faecalis T2]
 gi|256683084|gb|EEU22779.1| tRNA modification GTPase [Enterococcus faecalis T3]
 gi|256709473|gb|EEU24520.1| tRNA modification GTPase mnmE [Enterococcus faecalis T8]
 gi|256947532|gb|EEU64164.1| tRNA modification GTPase [Enterococcus faecalis DS5]
 gi|256951395|gb|EEU68027.1| tRNA modification GTPase [Enterococcus faecalis Merz96]
 gi|256954457|gb|EEU71089.1| tRNA modification GTPase [Enterococcus faecalis HIP11704]
 gi|256986743|gb|EEU74045.1| tRNA modification GTPase [Enterococcus faecalis JH1]
 gi|256989356|gb|EEU76658.1| tRNA modification GTPase [Enterococcus faecalis E1Sol]
 gi|256992014|gb|EEU79316.1| tRNA modification GTPase [Enterococcus faecalis Fly1]
 gi|256995844|gb|EEU83146.1| tRNA modification GTPase [Enterococcus faecalis D6]
 gi|256997271|gb|EEU83791.1| tRNA modification GTPase [Enterococcus faecalis CH188]
 gi|257163147|gb|EEU93107.1| tRNA modification GTPase trmE [Enterococcus faecalis X98]
 gi|291077923|gb|EFE15287.1| tRNA modification GTPase TrmE [Enterococcus faecalis R712]
 gi|291082456|gb|EFE19419.1| tRNA modification GTPase TrmE [Enterococcus faecalis S613]
 gi|294451690|gb|EFG20145.1| tRNA modification GTPase TrmE [Enterococcus faecalis PC1.1]
 gi|295112327|emb|CBL30964.1| tRNA modification GTPase trmE [Enterococcus sp. 7L76]
 gi|300849137|gb|EFK76890.1| tRNA modification GTPase TrmE [Enterococcus faecalis TUSoD Ef11]
 gi|306495993|gb|EFM65580.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0411]
 gi|306502266|gb|EFM71548.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0109]
 gi|306503387|gb|EFM72636.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0860]
 gi|306505968|gb|EFM75140.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2134]
 gi|306509297|gb|EFM78357.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0855]
 gi|306514807|gb|EFM83357.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4248]
 gi|310625275|gb|EFQ08558.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 512]
 gi|310629084|gb|EFQ12367.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0102]
 gi|310633637|gb|EFQ16920.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0635]
 gi|311287703|gb|EFQ66259.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 516]
 gi|311291556|gb|EFQ70112.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0470]
 gi|315026593|gb|EFT38525.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2137]
 gi|315030087|gb|EFT42019.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4000]
 gi|315033580|gb|EFT45512.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0017]
 gi|315036245|gb|EFT48177.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0027]
 gi|315143559|gb|EFT87575.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2141]
 gi|315148303|gb|EFT92319.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4244]
 gi|315151268|gb|EFT95284.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0012]
 gi|315152698|gb|EFT96714.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0031]
 gi|315155022|gb|EFT99038.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0043]
 gi|315158703|gb|EFU02720.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0312]
 gi|315163425|gb|EFU07442.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0645]
 gi|315165648|gb|EFU09665.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1302]
 gi|315172073|gb|EFU16090.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1342]
 gi|315174206|gb|EFU18223.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1346]
 gi|315579747|gb|EFU91938.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0630]
 gi|327536410|gb|AEA95244.1| tRNA modification GTPase TrmE [Enterococcus faecalis OG1RF]
 gi|329577012|gb|EGG58487.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1467]
          Length = 465

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 145/462 (31%), Positives = 251/462 (54%), Gaps = 24/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL---- 56
             E +TI A+ST     AISI+RLSG     +   + +   K   +  +    +G     
Sbjct: 5   TMEFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDP 64

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            + +++D+ +L V  +P++FT ED  E + HGGI VVN +  +L      R+A PGEF++
Sbjct: 65  QNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQL-LQLLLREGARMAEPGEFTK 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E +
Sbjct: 124 RAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVN 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL
Sbjct: 184 IDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSL 243

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   
Sbjct: 244 LNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKA 303

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST---------YTEEYD 340
           + ++DLILL+   +       ++ +   K +  + +  K DL +             E  
Sbjct: 304 LADSDLILLVLNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363

Query: 341 HLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEK 398
             +S  +  GL++L  KI  +    +  +   +  S+ RH+  L Q    L E+ +  E 
Sbjct: 364 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEVINGIEA 423

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 424 GMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|293611390|ref|ZP_06693686.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826262|gb|EFF84631.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 454

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 169/459 (36%), Positives = 260/459 (56%), Gaps = 24/459 (5%)

Query: 1   MNH--EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           MN+   + TI A++T      + +IRLSGP  +++ + + +K  P  R A  R F+  D 
Sbjct: 1   MNNMQSQTTIAAIATPPGRGGVGVIRLSGPKAYEIAQNLTQKNLPEARMAGFRKFYDADA 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+G+++ FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAF
Sbjct: 61  SIMDEGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GAIAAKAGEFSMRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           ENGK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF
Sbjct: 120 ENGKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDF 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E E++   +  ++L  +  ++  + +  +  + G+++R G ++VI G  NAGKSSL NA
Sbjct: 180 PE-EEIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA  + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E 
Sbjct: 239 LAGVERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQ 298

Query: 299 ADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343
           ADL+LL+ ++N   +             +    + IG K DL     E  D        +
Sbjct: 299 ADLLLLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQLAEISDFQGFRHITV 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401
           S+    G++ L++ I +     F     +  +  RHL  + +T  YL  A   L   + G
Sbjct: 359 SAKQEMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLSEAREQLVVFNAG 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 -ELVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|315168440|gb|EFU12457.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1341]
          Length = 465

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 145/462 (31%), Positives = 251/462 (54%), Gaps = 24/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL---- 56
             E +TI A+ST     AISI+RLSG     +   + +   K   +  +    +G     
Sbjct: 5   TMEFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDP 64

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            + +++D+ +L V  +P++FT ED  E + HGGI VVN +  +L      R+A PGEF++
Sbjct: 65  QNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQL-LQLLLREGARMAEPGEFTK 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E +
Sbjct: 124 RAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVN 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL
Sbjct: 184 IDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGPPNVGKSSL 243

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   
Sbjct: 244 LNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKA 303

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST---------YTEEYD 340
           + ++DLILL+   +       ++ +   K +  + +  K DL +             E  
Sbjct: 304 LADSDLILLVLNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363

Query: 341 HLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEK 398
             +S  +  GL++L  KI  +    +  +   +  S+ RH+  L Q    L E+ +  E 
Sbjct: 364 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEVINGIEA 423

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 424 GMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|262371178|ref|ZP_06064499.1| tRNA modification GTPase mnmE [Acinetobacter johnsonii SH046]
 gi|262313908|gb|EEY94954.1| tRNA modification GTPase mnmE [Acinetobacter johnsonii SH046]
          Length = 454

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 167/458 (36%), Positives = 256/458 (55%), Gaps = 22/458 (4%)

Query: 1   MN--HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58
           MN  + + TI A++T      + +IRLSGP  +++ + + +K  P  R A  R F+   G
Sbjct: 1   MNVMYNRTTIAAIATPPGRGGVGVIRLSGPKSYEIAQALTQKDLPKARFAGFRQFYDASG 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+GL I FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAF
Sbjct: 61  EVMDEGLAICFPNPNSFTGEDVVELQGHGGPVIQNALLGRLLEL-GAIAAKAGEFSMRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           ENGK+DL++AE++ADLI + ++   R ++  + G  S+     +++L H+R  +EA +DF
Sbjct: 120 ENGKLDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKVNHVLEQLIHLRLHVEAAIDF 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E E++      ++LN +  +   ++      + G+++R G ++VI G  NAGKSSL NA
Sbjct: 180 PE-EEIDFLVDGKILNLLDGVTAAVNQVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA  + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E 
Sbjct: 239 LAGIERAIVTDIAGTTRDVLHEKITLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQ 298

Query: 299 ADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDH------LI 343
           ADL+LL+ +++  ++             +    + IG K DL  T +   D       ++
Sbjct: 299 ADLLLLVYDLSQGEDPLKLAQEYFAEHIEPKRLMLIGNKCDLMETTSHIEDFNGFRHIMV 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGL 402
           S+    G++ LI  I +     F+    +  +  RHL  + +T  YL  A          
Sbjct: 359 SAKQETGVQALIEAITA--HAGFQPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVYNAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE+LRLA  +L +ITG    + LL  IF  FCIGK
Sbjct: 417 ELVAESLRLAQNALSEITGDFSADDLLGKIFGSFCIGK 454


>gi|238753998|ref|ZP_04615357.1| tRNA modification GTPase mnmE [Yersinia ruckeri ATCC 29473]
 gi|238707750|gb|EEQ00109.1| tRNA modification GTPase mnmE [Yersinia ruckeri ATCC 29473]
          Length = 454

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 157/453 (34%), Positives = 246/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +   V + +   K P PR A    F   DG  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAVAAVAQAVLG-KLPKPRYADYLPFRDTDGTTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 64  VLYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF + E++ 
Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSIRIHQLVEALTHLRIYVEAAIDFPD-EEID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  + +D++   ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEGQLNGVMSDLAKVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFM 302

Query: 306 KEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTG 348
            +  +                 P  +    +  K+D+        +        +S+ TG
Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADVTDETLGLTEVNGYSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDIIAE 407
           +G++ L + +K  +            + +RHL  L    ++L         +   +++AE
Sbjct: 363 DGIDLLRDHLKQSM-GFTSNTEGGFLARRRHLQALEMAAQHLVQGKEQLVSNYAGELLAE 421

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 422 ELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|332143488|ref|YP_004429226.1| tRNA modification GTPase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553510|gb|AEB00229.1| tRNA modification GTPase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 462

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 154/462 (33%), Positives = 243/462 (52%), Gaps = 25/462 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    +TI A +T      + I+R+SGP    + E +   +   PR A+   F   +  +
Sbjct: 4   LTLSTDTITAQATAPGRGGVGIVRVSGPKAKAIAEALVPSEL-TPRLATYTPFVDANKSV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + F  P SFTGED  E   HGG  V++ +++ +    + RLA+PGEFS +AF N
Sbjct: 63  IDQGIALFFKGPNSFTGEDVLELQGHGGQVVMDMLIDAVLATGHARLASPGEFSEQAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + ++   R ++  + GE S+      D++ H+R ++EA +DF E
Sbjct: 123 DKLDLAQAEAIADLIDASSKQAARSALRSLQGEFSTQIQTLSDQIVHLRMYVEAAIDFPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++  D+  +   ++    Q K G ++R G ++VI G  NAGKSSL NALA
Sbjct: 183 -EEIDFLSDGKISGDLSTIMQSLTKVRDQAKQGTLLREGMQVVIAGRPNAGKSSLLNALA 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDI GTTRDVL   + ++G  V I DTAG+RE+ D VE+ GI+R +  +  AD
Sbjct: 242 GRDSAIVTDIAGTTRDVLKEHIHIDGMPVHIIDTAGLRESPDKVEQIGIERAWQAINEAD 301

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL-------YSTYTEEYD-- 340
            +L + +  +   I             P+ I    +  K+DL        S  T++ D  
Sbjct: 302 HVLFVVDSTATSVIDPYEIWPEFMARLPQGIPVTVVRNKADLSTLSIGQSSVNTQQGDIS 361

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
              +S+  G G++ L   +   +            + +RH+  L Q   Y+        D
Sbjct: 362 VINLSAKEGSGVDTLKAHLAKTMGFD-TTTEGQFIARRRHIDALDQAYSYVSTGEQQLHD 420

Query: 400 -CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 421 AMAGELLAEELRLAHQALCEITGEFTPDDLLGKIFSSFCIGK 462


>gi|332533705|ref|ZP_08409564.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036869|gb|EGI73330.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 454

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 160/455 (35%), Positives = 245/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
            ++TI A +T      + IIR+SG     V E +   K P  R A    F  L G  LD+
Sbjct: 3   NQDTIAAQATAPGRGGVGIIRVSGSLAKSVAEKVVG-KIPKVRYADYVPFKSLAGEQLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ I F  P SFTGED  E   HGG  V++ +L+E++K+  +RLA PGEFS RAF N K+
Sbjct: 62  GIAIYFAGPNSFTGEDVLELQGHGGPVVLDMLLKEISKIEGVRLAKPGEFSERAFMNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI++ +E   + +++ + GE S      ++K+ H+R ++EA +DF + E+
Sbjct: 122 DLTQAEAIADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPD-EE 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  +V  D+  +   +++  +Q K G I+R G ++VI G  NAGKSSL NALA ++
Sbjct: 181 IDFLSDGKVSGDLDTIITQLNTVTNQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGRE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + ++G  + I DTAG+RE+ D VE+ GI+R + E+  AD +L
Sbjct: 241 AAIVTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRESPDRVEQIGIERAWDEINQADRVL 300

Query: 304 LLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSF 346
            + +     +              P+ +    I  K+DL           +     +S+ 
Sbjct: 301 FMLDGTDTIDTDPHKIWPEFMAKLPEGMGVTVIRNKADLSGDIVGMEQEQQYPVISLSAK 360

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
             +G+E +   +K+ +  +         + +RHL  L     +LE      E     +I+
Sbjct: 361 NADGIELVREHLKACIGFQ-GATEGGFMARRRHLDALESAAYHLETGKTQLEMHIAGEIL 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 420 AEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454


>gi|161830089|ref|YP_001597738.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 331]
 gi|14195264|sp|P94612|MNME_COXBU RecName: Full=tRNA modification GTPase mnmE
 gi|189036199|sp|A9KBS9|MNME_COXBN RecName: Full=tRNA modification GTPase mnmE
 gi|189036200|sp|A9NBA7|MNME_COXBR RecName: Full=tRNA modification GTPase mnmE
 gi|1780759|emb|CAA71458.1| unnamed protein product [Coxiella burnetii]
 gi|161761956|gb|ABX77598.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 331]
          Length = 452

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 160/457 (35%), Positives = 249/457 (54%), Gaps = 22/457 (4%)

Query: 1   MNHEK-ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           M +   ETI A +T +    I ++R+SG     + + I     P PR A+   F    G 
Sbjct: 1   MTYVFPETIAAQATPSGRGGIGVVRVSGEKTKAIAQKILG-CVPKPRYATFVKFRD-SGS 58

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+G+ + FP P SFTGED  E H HGG  V++ +L  + K    R A PGEFS RAF 
Sbjct: 59  VIDEGIALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKA-GARQARPGEFSERAFL 117

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N KIDL +AE++ADLI++ +E   R +M  + GE S    Q +D L  +R +IEA +DF 
Sbjct: 118 NNKIDLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFP 177

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E E++   + + +   +  L + +       K G ++R G  +VI G  N GKSSL N L
Sbjct: 178 E-EEIDFLADERIKETLENLTHQVQEIEKTAKQGALLREGITVVIAGEPNVGKSSLLNLL 236

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           + ++ AIVTDI GTTRD++   + ++G  + + DTAG+R T+D+VEKEG++RT   V+ A
Sbjct: 237 SGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLTEDVVEKEGVRRTQKAVQQA 296

Query: 300 DLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLY----STYTEEYDHLI-S 344
           DL+LL+ + +   E                I  + +  K DL         +EY H+  S
Sbjct: 297 DLLLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIVENKIDLIGEAPRKENKEYPHIKLS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLD 403
             T  G+E L N +K+    +      +  + +RH   +++   +L+ A+ +  +    +
Sbjct: 357 VKTRAGVELLKNHLKNTAGFEATH-ENNFIARRRHCDAIARASAFLKNANNHLLNQKAGE 415

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+L+LA  +L +ITG    + LL  IFS+FCIGK
Sbjct: 416 LVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 452


>gi|315613122|ref|ZP_07888032.1| tRNA modification GTPase TrmE [Streptococcus sanguinis ATCC 49296]
 gi|315314684|gb|EFU62726.1| tRNA modification GTPase TrmE [Streptococcus sanguinis ATCC 49296]
          Length = 471

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 146/458 (31%), Positives = 256/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 16  ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIIDP 74

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++ V  SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 75  QTGKVMDEVMVGVMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 133

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 134 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 193

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 194 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 253

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIR+TDDIVE+ G++R+   
Sbjct: 254 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGVERSKKA 313

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL          E    IS 
Sbjct: 314 LKEADLVLLVLNASDPLTAQDRQLLEISQDTNRIILLNKTDLPEAIETSELPEDVIRISV 373

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++++ ++I ++        +   +  S+ RH+  + + V  L+  +   E    +
Sbjct: 374 LKNQNIDKIEDRINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLELGMPV 433

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 434 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 471


>gi|92115430|ref|YP_575358.1| tRNA modification GTPase TrmE [Chromohalobacter salexigens DSM
           3043]
 gi|122419006|sp|Q1QS99|MNME_CHRSD RecName: Full=tRNA modification GTPase mnmE
 gi|91798520|gb|ABE60659.1| tRNA modification GTPase trmE [Chromohalobacter salexigens DSM
           3043]
          Length = 458

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 155/456 (33%), Positives = 237/456 (51%), Gaps = 22/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + ++TI A++T      + IIRLSGP+   + E I     P PR A    F+  D ++LD
Sbjct: 7   YRQDTIAAIATPPGRGGVGIIRLSGPASRDLAERILG-HCPAPRHAHYGPFYDADAQVLD 65

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L     +   RLA PGEFS RAF N K
Sbjct: 66  EGIALFFPGPHSFTGEDVLELQGHGGPVIMDLLLARCVAL-GARLARPGEFSERAFLNDK 124

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +      ++  + GE S+     +DKL  +R F+EA +DF E E
Sbjct: 125 LDLAQAEAIADLIDASSRAAAENALRSLQGEFSTRVSALVDKLIELRMFVEAAIDFPE-E 183

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   +  +V   +   +  +    +    G ++R G  +VI G  NAGKSSL NAL ++
Sbjct: 184 EIDFLADGKVAAMLQGAQETLGEVRAAAGQGALMREGMNVVIAGRPNAGKSSLLNALTER 243

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVTDI GTTRDVL   + ++G  + + DTAG+R+T D +EK G+ R + E+E AD +
Sbjct: 244 DSAIVTDIEGTTRDVLREYIHIDGMPLHVIDTAGLRDTPDAIEKIGVARAWEEIEKADRV 303

Query: 303 LLLKEINSKKE-----------ISFPKNIDFIFIGTKSD------LYSTYTEEYDHLISS 345
           LLL +  +  +              P       +  K D           T      +S+
Sbjct: 304 LLLVDATTTTQTDPMQLWPEFVARLPHPERLTLVRNKIDESGETEQSDLSTSPPIVRLSA 363

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DI 404
            TG G++ L   +K+++            + +RHL  L +    L+      +  G  ++
Sbjct: 364 KTGLGVDNLKEHLKAVMGFDATT-EGRFSARRRHLDALDRAGDALDNGIAQLRGHGAGEL 422

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE+LR A  +L +ITG    + LL  IF  FCIGK
Sbjct: 423 LAEDLRDAQQALSEITGEFTADDLLGEIFGSFCIGK 458


>gi|120600873|ref|YP_965447.1| tRNA modification GTPase TrmE [Shewanella sp. W3-18-1]
 gi|166991118|sp|A1RQE8|MNME_SHESW RecName: Full=tRNA modification GTPase mnmE
 gi|120560966|gb|ABM26893.1| tRNA modification GTPase trmE [Shewanella sp. W3-18-1]
 gi|319428592|gb|ADV56666.1| tRNA modification GTPase TrmE [Shewanella putrefaciens 200]
          Length = 453

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 162/455 (35%), Positives = 255/455 (56%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P  R A    F    G+++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRISGDKATDVAMAVLG-HLPKTRYADYCDFKNATGQVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+
Sbjct: 61  GIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S    + +D++T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++ N +  + + +S+  +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIANALYKIIDKLSTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYD---HLISSF 346
            + +  +   +             P N+    I  K+DL       TEE     + IS+ 
Sbjct: 300 FMVDGTTTDAVDPHDIWPDFINRLPANLGVTVIRNKADLTGENLDMTEEKGYSVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G++EL   +KS++  +   L     + +RHL  L     +L++     E     +++
Sbjct: 360 TGLGVDELKLHLKSLMGYQ-SNLEGGFIARRRHLEALDVAASHLQLGKEQLEVYLAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMAQIALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|89100947|ref|ZP_01173794.1| tRNA modification GTPase [Bacillus sp. NRRL B-14911]
 gi|89084356|gb|EAR63510.1| tRNA modification GTPase [Bacillus sp. NRRL B-14911]
          Length = 461

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 157/459 (34%), Positives = 252/459 (54%), Gaps = 25/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL-----DG 58
           +TI A+ST     AI+I+RLSG   F + + + +    K     AS    +G       G
Sbjct: 4   DTIAAISTPMGEGAIAIVRLSGDEAFSIADKLYRGVGGKRISDAASHTIHYGHIIDPKTG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           ++ ++ ++ V   P++FT ED  E + HGGI  VN +L+ L      RLA PGEF++RAF
Sbjct: 64  QVAEEVMVSVMKGPKTFTKEDVVEINCHGGIVSVNRVLQ-LVLNHGARLAEPGEFTKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L  +   ++    + IE ++D+
Sbjct: 123 LNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMEGRLSKLVKRLRQEILETLAHIEVNIDY 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + +L    F+K +I   +   + G+I+R G   VI+G  N GKSSL N+
Sbjct: 183 PEYDDVEEMTHQLLLEKAGFVKGEIEKLLKTSEQGKILREGLSTVIVGRPNVGKSSLLNS 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 243 LVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLLDTAGIRETEDIVERIGVERSRQVLKE 302

Query: 299 ADLILLLK----EINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYD---------HLI 343
           ADLILL+     E+  + E  F   +++D I I  K+DL      E              
Sbjct: 303 ADLILLVVNYSDELTQEDENLFKVVEDMDVIVIVNKTDLPQQIDMERVRELAAGHRLVTT 362

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
           S    +G++EL   I S+      +    +  S+ RH+  L+Q +  +E A    +    
Sbjct: 363 SLLEDQGVDELEESISSLFFAGSIEAGDMTYVSNTRHIALLNQALNSIEEALNGVDFGTP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DII  +L      LG+I G    + L+D +FS+FC+GK
Sbjct: 423 IDIIQIDLTRTWELLGEIIGESVHDSLIDQLFSQFCLGK 461


>gi|15675063|ref|NP_269237.1| tRNA modification GTPase TrmE [Streptococcus pyogenes M1 GAS]
 gi|71910607|ref|YP_282157.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS5005]
 gi|21363025|sp|Q99ZU0|MNME_STRP1 RecName: Full=tRNA modification GTPase mnmE
 gi|13622217|gb|AAK33958.1| putative thiophene degradation protein F [Streptococcus pyogenes M1
           GAS]
 gi|71853389|gb|AAZ51412.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS5005]
          Length = 458

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIINP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + S +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLESLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E        IS 
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
            T + +  + ++I  +  +     +   +  S+ RH+  + + V+ LE  +        +
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLEAVNDGLALGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|332288923|ref|YP_004419775.1| tRNA modification GTPase TrmE [Gallibacterium anatis UMN179]
 gi|330431819|gb|AEC16878.1| tRNA modification GTPase TrmE [Gallibacterium anatis UMN179]
          Length = 454

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 161/455 (35%), Positives = 254/455 (55%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           EKETI A +T      + I+R+SGP   QV + +   K   PR A+   F  +DG +LD+
Sbjct: 3   EKETIVAQATPPGRGGVGILRVSGPLSEQVAKEVLG-KTLKPRFANYLPFKDIDGSVLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F +P SFTGED  E   HGG  +++ +L+ + ++  +RLA PGEFS +AF N KI
Sbjct: 62  GIALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILQIKGIRLARPGEFSEQAFLNDKI 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R +++ + GE S+   Q +D+L ++R+++EA +DF + E+
Sbjct: 122 DLAQAEAIADLIDASSEQAARSALKSLQGEFSTKVHQLVDELIYLRTYVEAAIDFPD-EE 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  ++   +  +   ++   SQ K G ++R G K+VI G  NAGKSSL NALA +D
Sbjct: 181 IDFLADGKIEAHLNQIIAKVAEVQSQAKQGSLLREGMKVVIAGRPNAGKSSLLNALAGRD 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + L+G  + I DTAG+R   D VE+ GI+R + E++ AD +L
Sbjct: 241 AAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRTATDEVERIGIERAWQEIDQADRVL 300

Query: 304 LLKEINSKKEI-----------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSF 346
            + +  +  E              P +I    I  K+D+        T        +S+ 
Sbjct: 301 FMLDSTTTDETLPEKIWPEFMSRLPPSIPVTIIRNKADISGEAEGIRTENGYTTITLSAK 360

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDII 405
           T +G++ L   +K  +  +         + +RHL  L Q  ++L+   +        +++
Sbjct: 361 TQQGIQLLKAHLKESIGYQTVT-EGGFLARRRHLEALEQAAQHLQQGHIQLTQFYAGELL 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE L++A  +L +ITG    + LL  IFS FCIGK
Sbjct: 420 AEELKMAQNALSEITGQFTSDDLLGNIFSSFCIGK 454


>gi|126176560|ref|YP_001052709.1| tRNA modification GTPase TrmE [Shewanella baltica OS155]
 gi|125999765|gb|ABN63840.1| tRNA modification GTPase trmE [Shewanella baltica OS155]
          Length = 479

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 161/458 (35%), Positives = 253/458 (55%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           ++   +TI A +T      + IIR+SG     V   +     P  R A    F    G++
Sbjct: 25  ISVTTDTIVAQATAPGRGGVGIIRISGDKASNVAMAVLG-HLPKTRYADYCDFKSASGQV 83

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N
Sbjct: 84  IDQGIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMN 143

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI +  E   + +++ + GE S    + +D++T++R ++EA +DF +
Sbjct: 144 DKLDLTQAEAIADLIDATCEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPD 203

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+V   S  ++ N +  + + +    +  K G IIR G K+VI G  NAGKSSL NALA
Sbjct: 204 -EEVDFLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALA 262

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            K+ AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD
Sbjct: 263 GKESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSAD 322

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYD---HLI 343
            +L + +  +   +             P N+    I  K+DL       TEE     + I
Sbjct: 323 RVLFMVDGTTTAAVDPHAIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRI 382

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           S+ TG G+EEL   +KS++  +   L     + +RHL  L     +L++     E     
Sbjct: 383 SAKTGLGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAG 441

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 442 ELLAEELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 479


>gi|319639448|ref|ZP_07994198.1| tRNA modification GTPase mnmE [Neisseria mucosa C102]
 gi|317399343|gb|EFV80014.1| tRNA modification GTPase mnmE [Neisseria mucosa C102]
          Length = 454

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 164/458 (35%), Positives = 257/458 (56%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  + TI A++T      + +IRLSG +   + + +   K P PR A    F G DG+ 
Sbjct: 1   MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLVQTLSGGKTPKPRTALYTDFLGGDGQP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+L+ F +P SFTGED  E   HGG  V++ +L    ++   R+A PGEF++RAF N
Sbjct: 61  IDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + ++   R+++  + G  S    + +D L  +R  +EA LDF E
Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  + + ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 180 -EDIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D+AIVTDI GTTRD +   + L+G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDL-----------YSTYTEEYDHL 342
           + L+L +    +N+K +    S P+ +  I I  K+DL            +    +    
Sbjct: 299 VALILIDPREGVNAKTQAILNSLPEGLKKIEIHNKADLTGEPVAVRSDGLAQTGADTVIS 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TG GL+ L + +   +  +  +      +  RHL  L +    LE A+L + +  +
Sbjct: 359 LSAKTGAGLDLLKHALLQEVGWQ-GESESLFLARSRHLNALHEAEAELENAALCDNNQ-I 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ AE+LRLA  +  +ITG    + LL +IFS+FCIGK
Sbjct: 417 ELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454


>gi|148828171|ref|YP_001292924.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittGG]
 gi|166200481|sp|A5UID5|MNME_HAEIG RecName: Full=tRNA modification GTPase mnmE
 gi|148719413|gb|ABR00541.1| tRNA modification GTPase [Haemophilus influenzae PittGG]
          Length = 452

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 163/455 (35%), Positives = 251/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATEVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKFD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    ++ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRSIINQLEDVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFT 347
           + + +  + +             P  +    +  K DL      E +         S+ T
Sbjct: 300 MLDSSDPESVDLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQSGYQMISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQTG-MEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|15890077|ref|NP_355758.1| tRNA modification GTPase TrmE [Agrobacterium tumefaciens str. C58]
 gi|205829053|sp|A9CHB2|MNME_AGRT5 RecName: Full=tRNA modification GTPase mnmE
 gi|15158062|gb|AAK88543.1| tRNA modification GTPase [Agrobacterium tumefaciens str. C58]
          Length = 442

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 213/443 (48%), Positives = 302/443 (68%), Gaps = 4/443 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI+A+S+GALP+ +++IR+SG   F     +  +  P PR ASL      +  I
Sbjct: 1   MPDSADTIYALSSGALPAGVAVIRISGAKAFIALRALTGRDLPLPRTASLCSIRNRNNEI 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+IVFP+P SFTGE+  E H HG  AV+  I  EL  +  LR A+ GEFSRRAFEN
Sbjct: 61  IDQSLVIVFPAPNSFTGENCVEIHSHGSRAVMASIFAELDNLGGLRPADAGEFSRRAFEN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DLLE E LADL+ +ETEMQRRL++E  SG+LS+LY  W ++LT  R+ IEA+LDF++
Sbjct: 121 GKMDLLEVEGLADLLQAETEMQRRLAVEQSSGQLSALYDGWANRLTRARALIEAELDFAD 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EEDV +  + +V   +  LK +I++H+  G  GEIIR+G+K+ ++G  NAGKS+L NAL+
Sbjct: 181 EEDVPDSVATQVWEAMAALKGEINAHLQGGGNGEIIRDGFKVALVGEPNAGKSTLLNALS 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++VAIVTDI GTTRDVL++D++L+GYLV+I DTAGIRET D+VE+EG++R  L  E AD
Sbjct: 241 GREVAIVTDIAGTTRDVLSVDINLDGYLVRIFDTAGIRETQDVVEREGVRRAVLTAETAD 300

Query: 301 LILLLKEINS--KKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLISSFTGEGLEELINK 357
           LIL+L++ +S  K+ I    N   + + TK+ L S  + +++D  IS+  G GL+EL   
Sbjct: 301 LILILQDNDSTPKQSIGSFDNQRSLRVRTKTLLRSRASDDDFDLSISAKEGIGLDELRRA 360

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           +K  +  +       +P+  RH   L +T+ Y+  A L+ +   L I +E LRLA+ SLG
Sbjct: 361 LKREIEKRVGSGQTLVPARARHKKRLEETLNYVSDA-LDSETLDLAIRSEYLRLAATSLG 419

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           +ITG VDVE LL +IFS+FCIGK
Sbjct: 420 RITGRVDVEDLLGVIFSEFCIGK 442


>gi|227508120|ref|ZP_03938169.1| tRNA modification GTPase TrmE [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227511145|ref|ZP_03941194.1| tRNA modification GTPase TrmE [Lactobacillus buchneri ATCC 11577]
 gi|227085627|gb|EEI20939.1| tRNA modification GTPase TrmE [Lactobacillus buchneri ATCC 11577]
 gi|227192349|gb|EEI72416.1| tRNA modification GTPase TrmE [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 464

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 143/462 (30%), Positives = 239/462 (51%), Gaps = 25/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
             E +TI A+ST      ISI+R+SG     V + + + K    + AS    +G      
Sbjct: 5   TTEFDTIAAISTPPGEGGISIVRISGEEALDVAKNVYRGKN-LDKVASNTINYGHIVDPS 63

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ +L +  +P ++T ED  E + HGGI   N IL+ L      R+A PGEF++R
Sbjct: 64  TNQEVDEVMLSIMRAPHTYTKEDIIEINCHGGIVATNRILQ-LVLSNGARMAEPGEFTKR 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL ++E++ DLI ++T+   + ++  + G LS L       +  + + +E ++
Sbjct: 123 AFLNGRIDLSQSEAVMDLIEAKTDRSMKAAISQLDGNLSHLIKHLRKDILDVLAQVEVNI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +SK +      +   I   +   K G+I+R+G    I+G  N GKSSL 
Sbjct: 183 DYPEYDDVETMTSKLLREKATDVHKRIVQLLQTAKQGKILRDGLATSIIGRPNVGKSSLL 242

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTD+PGTTRDVL    ++ G  +K+ DTAGIR+T+D VEK G+ R+   +
Sbjct: 243 NHLLHEDKAIVTDVPGTTRDVLEEYANVSGVPLKLIDTAGIRDTNDKVEKIGVDRSRKAI 302

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY---------TEEYDH 341
            +ADL+LL+   +       ++ I        I +  K+DL               +   
Sbjct: 303 NSADLVLLVLNASEPLTEEDRQLIEATNKKKRIVVLNKTDLPIKLNLSEIKRLTKAQNII 362

Query: 342 LISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398
             S+   +GL+ L   I ++  N+         + ++ RH+  L+Q    LE      ++
Sbjct: 363 STSAIKADGLKGLEELISTMFFNEGIASSQNDVVVTNARHIGLLNQAKSALEDVLKGLDE 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+ITG    ++L+D +FS+FC+GK
Sbjct: 423 GMPVDLVQIDMTRCWDFLGEITGDSYQDELIDQLFSQFCLGK 464


>gi|306833320|ref|ZP_07466448.1| tRNA modification GTPase TrmE [Streptococcus bovis ATCC 700338]
 gi|304424517|gb|EFM27655.1| tRNA modification GTPase TrmE [Streptococcus bovis ATCC 700338]
          Length = 457

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 140/458 (30%), Positives = 247/458 (53%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           + +E +TI A+ST     AI I+RLSG     + + +   K      AS    +G     
Sbjct: 2   ITNEFDTIAAISTPLGEGAIGIVRLSGTEALAIAQKVYHGKD-LNEVASHTINYGHIVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               +LD+ ++ V  +P++FT E+  E + HGG+AV N IL+ L      RLA PGEF++
Sbjct: 61  DTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEILQ-LVLRQGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   
Sbjct: 240 LNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           +E ADL+LL+   +       +  +   K+ + I +  K+DL      +        IS 
Sbjct: 300 LEEADLVLLVLNSSEPLTDQDRALLELSKDSNRIILLNKTDLPEKIEADQLPDDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++ +  +I  +        +   +  S+ RH+  + + V+ L+  +   E    +
Sbjct: 360 LKNQNIDVIEERINQLFFANAGIVEKDATYLSNARHISLIEKAVQSLQAVNEGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457


>gi|227523332|ref|ZP_03953381.1| tRNA modification GTPase TrmE [Lactobacillus hilgardii ATCC 8290]
 gi|227089523|gb|EEI24835.1| tRNA modification GTPase TrmE [Lactobacillus hilgardii ATCC 8290]
          Length = 464

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 143/462 (30%), Positives = 239/462 (51%), Gaps = 25/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
             E +TI A+ST      ISI+R+SG     V + + + K    + AS    +G      
Sbjct: 5   TTEFDTIAAISTPPGEGGISIVRISGEEALDVAKNVYRGKN-LDKVASNTINYGHIVDPS 63

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ +L +  +P ++T ED  E + HGGI   N IL+ L      R+A PGEF++R
Sbjct: 64  TNQEVDEVMLSIMRAPHTYTKEDIIEINCHGGIVATNRILQ-LVLSNGARMAEPGEFTKR 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL ++E++ DLI ++T+   + ++  + G LS L       +  + + +E ++
Sbjct: 123 AFLNGRIDLSQSEAVMDLIEAKTDRSMKAAISQLDGNLSHLIKHLRKDILDVLAQVEVNI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +SK +      +   I   +   K G+I+R+G    I+G  N GKSSL 
Sbjct: 183 DYPEYDDVETMTSKLLREKATDVHKRIVQLLQTAKQGKILRDGLATSIIGRPNVGKSSLL 242

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTD+PGTTRDVL    ++ G  +K+ DTAGIR+T+D VEK G+ R+   +
Sbjct: 243 NHLLHEDKAIVTDVPGTTRDVLEEYANVSGVPLKLIDTAGIRDTNDKVEKIGVDRSRKAI 302

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY---------TEEYDH 341
            +ADL+LL+   +       ++ I        I +  K+DL               +   
Sbjct: 303 NSADLVLLVLNASEPLTEEDRQLIDATNKKKRIVVLNKTDLPIKLNLSEIKRLTKAQNII 362

Query: 342 LISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398
             S+   +GL+ L   I ++  N+         + ++ RH+  L+Q    LE      ++
Sbjct: 363 STSAIKADGLKGLEELISTMFFNEGIASSQNDVVVTNARHIGLLNQAKSALEDVLKGLDE 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+ITG    ++L+D +FS+FC+GK
Sbjct: 423 GMPVDLVQIDMTRCWDFLGEITGDSYQDELIDQLFSQFCLGK 464


>gi|306827423|ref|ZP_07460709.1| tRNA modification GTPase TrmE [Streptococcus pyogenes ATCC 10782]
 gi|304430368|gb|EFM33391.1| tRNA modification GTPase TrmE [Streptococcus pyogenes ATCC 10782]
          Length = 458

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 143/458 (31%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIINP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E        IS 
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
            T + +  + ++I  +  +     +   +  S+ RH+  + + V+ LE  +        +
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLEAVNDGLALGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|227543714|ref|ZP_03973763.1| tRNA modification GTP-binding protein TrmE [Lactobacillus reuteri
           CF48-3A]
 gi|300908779|ref|ZP_07126242.1| tRNA modification GTPase TrmE [Lactobacillus reuteri SD2112]
 gi|227186282|gb|EEI66353.1| tRNA modification GTP-binding protein TrmE [Lactobacillus reuteri
           CF48-3A]
 gi|300894186|gb|EFK87544.1| tRNA modification GTPase TrmE [Lactobacillus reuteri SD2112]
          Length = 477

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 142/462 (30%), Positives = 245/462 (53%), Gaps = 25/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
           N E +TI A+ST      ISIIR+SG    +V + I K K    + A+    +G      
Sbjct: 18  NSENDTIAAISTPVGEGGISIIRISGDDAVKVAQRIYKGKD-LAKVATHTINYGHIVDPD 76

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ ++ V  +P ++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 77  TDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQ-LVLSFGARMAEPGEFTKR 135

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL ++E++ DLI ++T+   ++++  + G+LS L       +  + + +E ++
Sbjct: 136 AFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLAQVEVNI 195

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  ++K +      ++  I   +   K G+++R+G    I+G  N GKSSL 
Sbjct: 196 DYPEYDAVEEMTTKLLKEKAEDIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNVGKSSLL 255

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  +D AIVT++ GTTRDV+   +++ G  +K+ DTAGIR+T+D VEK G++R+   +
Sbjct: 256 NSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVERSRKAL 315

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE---------YDH 341
             ADL+LLL + +       ++ +   K+   I I  K+DL      E            
Sbjct: 316 GAADLVLLLIDSSNELTDEDRQLLEATKDKQRIIILNKTDLPRKVDLEELKSLAGKSAVI 375

Query: 342 LISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEK 398
             S    EG+++L  +I  +  NK         + ++ RH+  L Q    L ++      
Sbjct: 376 ETSIVNHEGMDQLGEQIGHMFFNKGIESNQNNVMVTNARHIGLLHQANDALSDVLKGIND 435

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 436 GMPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 477


>gi|15458528|gb|AAK99724.1| Thiophene and furan oxidation protein [Streptococcus pneumoniae R6]
          Length = 479

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 254/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 24  ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 82

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 83  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 141

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 142 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 201

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 202 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 261

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 262 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 321

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 322 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEDVIRISV 381

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 382 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 441

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 442 DLLQVDLTRTWEILGEITGDATPDELITQLFSQFCLGK 479


>gi|261365695|ref|ZP_05978578.1| tRNA modification GTPase TrmE [Neisseria mucosa ATCC 25996]
 gi|288565791|gb|EFC87351.1| tRNA modification GTPase TrmE [Neisseria mucosa ATCC 25996]
          Length = 454

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 164/458 (35%), Positives = 257/458 (56%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  + TI A++T      + +IRLSG +   + + +   K P PR A    F G DG+ 
Sbjct: 1   MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGQP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+L+ F +P SFTGED  E   HGG  V++ +L    ++   R+A PGEF++RAF N
Sbjct: 61  IDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + ++   R+++  + G  S    + +D L  +R  +EA LDF E
Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  + + ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 180 -EDIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D+AIVTDI GTTRD +   + L+G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDL-----------YSTYTEEYDHL 342
           + L+L +    +N+K +    S P+ +  I I  K+DL            +    +    
Sbjct: 299 VALILIDPREGLNAKTQAILNSLPEGLKKIEIHNKADLTGEPVAVRSDGLAQTGADTVIS 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TG GL+ L + +   +  +  +      +  RHL  L +    LE A+L + +  +
Sbjct: 359 LSAKTGAGLDLLKHALLQEVGWQ-GESESLFLARSRHLNALHEAEAELENAALCDNNQ-I 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ AE+LRLA  +  +ITG    + LL +IFS+FCIGK
Sbjct: 417 ELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454


>gi|325695846|gb|EGD37737.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK160]
          Length = 479

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 253/457 (55%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 24  ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 83

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 84  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 142

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 143 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 202

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       ++ +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 203 DYPEYDDVEEMTTQLMREKTAEFEDLLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 262

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 263 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 322

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+   +       K+ +   ++ + I +  K+DL      +        IS  
Sbjct: 323 QEADLVLLVLNASEPLTDQDKQLLEISQDSNRIVLLNKTDLEEKIELDQLPTDVIKISVL 382

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + +  L+      E    +D
Sbjct: 383 HNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPVD 442

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 443 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 479


>gi|229550722|ref|ZP_04439447.1| tRNA modification GTPase TrmE [Enterococcus faecalis ATCC 29200]
 gi|229304155|gb|EEN70151.1| tRNA modification GTPase TrmE [Enterococcus faecalis ATCC 29200]
          Length = 465

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 145/462 (31%), Positives = 251/462 (54%), Gaps = 24/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL---- 56
             E +TI A+ST     AISI+RLSG     +   + +   K   +  +    +G     
Sbjct: 5   TMEFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDP 64

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            + +++D+ +L V  +P++FT ED  E + HGGI VVN +  +L      R+A PGEF++
Sbjct: 65  QNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQL-LQLLLREGARMAEPGEFTK 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E +
Sbjct: 124 RAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVN 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL
Sbjct: 184 IDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSL 243

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   
Sbjct: 244 LNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKA 303

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST---------YTEEYD 340
           + ++DLILL+   +       ++ +   K +  + +  K DL +             E  
Sbjct: 304 LADSDLILLVLNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363

Query: 341 HLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEK 398
             +S  +  GL++L  KI  +    +  +   +  S+ RH+  L Q    L E+ +  E 
Sbjct: 364 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAAISLQEVINGIEA 423

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 424 GMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|164685874|ref|ZP_01947569.2| tRNA modification GTPase TrmE [Coxiella burnetii 'MSU Goat Q177']
 gi|165922497|ref|ZP_02219668.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 334]
 gi|164601391|gb|EAX31811.2| tRNA modification GTPase TrmE [Coxiella burnetii 'MSU Goat Q177']
 gi|165916702|gb|EDR35306.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 334]
          Length = 452

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 161/457 (35%), Positives = 249/457 (54%), Gaps = 22/457 (4%)

Query: 1   MNHEK-ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           M +   ETI A +T +    I ++R+SG     + + I     P PR A+   F    G 
Sbjct: 1   MTYVFPETIAAQATPSGRGGIGVVRVSGEKTKAIAQKILG-CVPKPRYATFVKFRD-SGS 58

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+G+ + FP P SFTGED  E H HGG  V++ +L  + K    R A PGEFS RAF 
Sbjct: 59  VIDEGIALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKA-GARQARPGEFSERAFL 117

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N KIDL +AE++ADLI++ +E   R +M  + GE S    Q +D L  +R +IEA +DF 
Sbjct: 118 NNKIDLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFP 177

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E E++   + + +   +  L + +       K G ++R G  +VI G  N GKSSL N L
Sbjct: 178 E-EEIDFLADERIKETLENLTHQVQEIEKTAKQGALLREGITVVIAGEPNVGKSSLLNLL 236

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           + ++ AIVTDI GTTRD++   + ++G  + + DTAG+R T+D+VEKEG++RT   V+ A
Sbjct: 237 SGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLTEDVVEKEGVRRTQKAVQQA 296

Query: 300 DLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLY----STYTEEYDHLI-S 344
           DL+LL+ + +   E                I  + I  K DL         +EY H+  S
Sbjct: 297 DLLLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIIENKIDLIGEAPRKENKEYPHIKLS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLD 403
             T  G+E L N +K+    +      +  + +RH   +++   +L+ A+ +  +    +
Sbjct: 357 VKTRAGVELLKNHLKNTAGFEATH-ENNFIARRRHCDAIARASAFLKNANNHLLNQKAGE 415

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+L+LA  +L +ITG    + LL  IFS+FCIGK
Sbjct: 416 LVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 452


>gi|323479218|gb|ADX78657.1| tRNA modification GTPase TrmE [Enterococcus faecalis 62]
          Length = 460

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 145/460 (31%), Positives = 251/460 (54%), Gaps = 24/460 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----D 57
           E +TI A+ST     AISI+RLSG     +   + +   K   +  +    +G      +
Sbjct: 2   EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ +L V  +P++FT ED  E + HGGI VVN +  +L      R+A PGEF++RA
Sbjct: 62  DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQL-LQLLLREGARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E ++D
Sbjct: 121 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 181 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   + 
Sbjct: 241 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 300

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDHL 342
           ++DLILL+   +       ++ +   K +  + +  K DL +             E    
Sbjct: 301 DSDLILLVLNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEILS 360

Query: 343 ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDC 400
           +S  +  GL++L  KI  +    +  +   +  S+ RH+  L Q    L E+ +  E   
Sbjct: 361 VSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEVINGIEAGM 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 421 PVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 460


>gi|332308614|ref|YP_004436465.1| tRNA modification GTPase TrmE [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175943|gb|AEE25197.1| tRNA modification GTPase TrmE [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 460

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 154/457 (33%), Positives = 249/457 (54%), Gaps = 21/457 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
             +++TI A +T +    + I+R+SG    +V E I     P  R A    F    G  L
Sbjct: 7   TPDQDTIVAQATASGRGGVGIVRVSGTLAAKVAEQIIGHVPPV-RNAQYVPFVSNTGEAL 65

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+G+ + F +P SFTGED  E   HGG  V++ +++   ++P++RLA PGEFS RA+ N 
Sbjct: 66  DQGIALYFKAPHSFTGEDVLELQGHGGQVVLDMLIKATLQIPDVRLARPGEFSERAYLND 125

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ADLI + +E   R ++  + GE S+     ++ LTH+R ++EA +DF + 
Sbjct: 126 KLDLAQAEAIADLIDASSEQAARGALRSLQGEFSTQINHLVELLTHLRIYVEAAIDFPD- 184

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E++   S  +V ND+  +   +S+  ++ + G ++R G ++VI G  NAGKSSL NALA 
Sbjct: 185 EEIDFLSDGKVQNDLSAITAQLSAVKNKAQQGSLLREGMRVVIAGRPNAGKSSLLNALAG 244

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT I GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI+R + E+E AD 
Sbjct: 245 RDAAIVTAIAGTTRDVLKEHIHIDGMPLHIIDTAGLRDSSDEVERIGIERAWQEIEQADR 304

Query: 302 ILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTEEYDH------LIS 344
           +L + +    +E              P  +    I  K+DL      + ++       +S
Sbjct: 305 VLFMLDSTETQESDPYKIWPDFMQRLPDKMGLTVIRNKADLSGESIGKVEYKGYPVFQLS 364

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           +   +G++ L   +K  +            + +RH+  + +   +L +     E +   +
Sbjct: 365 ASHKQGIDVLAEHLKECM-GFHSSNEGQFIARRRHIDAIERAEEHLLLGKQQLEDNLAGE 423

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 424 LLAEELRLAQSYLSEITGEFSSDDLLGKIFSSFCIGK 460


>gi|284007058|emb|CBA72333.1| probable tRNA modification GTPase [Arsenophonus nasoniae]
          Length = 470

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 155/457 (33%), Positives = 246/457 (53%), Gaps = 21/457 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
            +  +TI A +T      + I+R+SGP   ++   I   K P PR A    F+  +G++L
Sbjct: 17  TYTNDTIIAQATPPGRGGVGILRISGPKVIEIA-RIVLGKLPQPRYADYLPFYDSNGKVL 75

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+G+ + FP+P SFTGED  E   HGG  +++ +L+ +  +  +R+ANPGEFS RAF N 
Sbjct: 76  DQGIALYFPAPNSFTGEDVLELQGHGGPVIIDLLLKRILVIDEIRIANPGEFSERAFLND 135

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ADLI + TE   R ++  + G  S    + ++ LT++R ++EA +DF + 
Sbjct: 136 KMDLAQAEAIADLIDASTEQAARSAVNSLQGVFSQQIYEMVEALTNLRIYVEAAIDFPD- 194

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E++   S  ++   +  +   + S  SQ   G ++R G K+VI G  NAGKSSL NAL+ 
Sbjct: 195 EEIDFLSDGKIETKLNEVIAHLDSVRSQAYQGSLLREGMKVVIAGRPNAGKSSLLNALSG 254

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VEK G++R + E+E AD 
Sbjct: 255 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVEKIGVERAWQEIEQADH 314

Query: 302 ILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTEEYD------HLIS 344
           IL + +  + +               PK++    I  K D+                 +S
Sbjct: 315 ILFMVDSTTTQATEPKQIWPEFMARLPKSLPITVIRNKVDITDEPIAITKVGNYSLIRLS 374

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
           ++  EG++ L   +K  +      +     + +RH+  L+    +L+            +
Sbjct: 375 AYRKEGIDLLRQHLKESI-GFNHHIEGGFLARRRHIQALNIAAEHLQQGYQQLVVAHSGE 433

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE LRL   +L +ITG    + LL  IFS FCIGK
Sbjct: 434 LLAEELRLTQQALSEITGEFSSDDLLGSIFSSFCIGK 470


>gi|119471653|ref|ZP_01614038.1| tRNA modification GTPase [Alteromonadales bacterium TW-7]
 gi|119445432|gb|EAW26719.1| tRNA modification GTPase [Alteromonadales bacterium TW-7]
          Length = 454

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 161/455 (35%), Positives = 246/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
            ++TI A +T      + IIR+SG     V E +   K P  R A    F  L+G  LD+
Sbjct: 3   NQDTIAAQATAPGRGGVGIIRVSGSLAKSVAEKVIG-KIPKVRYADYVPFKNLNGDQLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ I F  P SFTGED  E   HGG  V++ +L+E++K+ ++RLA PGEFS RAF N K+
Sbjct: 62  GIAIYFAGPNSFTGEDVLELQGHGGPVVLDMLLKEISKIESVRLAKPGEFSERAFMNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE+++DLI++ +E   + +++ + GE S      ++K+ H+R ++EA +DF + E+
Sbjct: 122 DLTQAEAISDLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPD-EE 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  +V  D+  + N +++   Q K G I+R G ++VI G  NAGKSSL NALA ++
Sbjct: 181 IDFLSDGKVSGDLDAIINQLNTVTDQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGRE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + ++G  + I DTAG+RE+ D VE+ GI+R + E+  AD +L
Sbjct: 241 AAIVTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRESPDRVEQIGIERAWDEINQADRVL 300

Query: 304 LLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSF 346
            + +     +              PK +    I  K+DL        ++        S+ 
Sbjct: 301 FMLDGTDTVDTDPHKIWPEFMAKLPKGMGVTVIRNKADLSGDIVGLDENQQYPVISLSAK 360

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
             EG+E +   +K+ +            + +RHL  L     +L+      E     +I+
Sbjct: 361 NAEGIELVREHLKACIGFD-GATEGGFMARRRHLDALESAAYHLDTGKTQLEMHVAGEIL 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 420 AEELRLTQQFLNEITGEFTSDDLLGKIFSSFCIGK 454


>gi|15606214|ref|NP_213591.1| tRNA modification GTPase TrmE [Aquifex aeolicus VF5]
 gi|6647876|sp|O67030|MNME_AQUAE RecName: Full=tRNA modification GTPase mnmE
 gi|2983408|gb|AAC06992.1| thiophene and furan oxidation protein [Aquifex aeolicus VF5]
          Length = 448

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 169/450 (37%), Positives = 259/450 (57%), Gaps = 17/450 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDK 63
           +E I A++T    SAI I+RLSG     + +   K K++  PR A     +   G  LD+
Sbjct: 2   REPIVAIATPYGESAIGIVRLSGKGVLDLVKKFFKTKREIKPRYAHFGVLYDDKGEELDE 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+LI + +P S+TGED  E ++HG   ++   LE L      RLA PGEF++RAF NGK+
Sbjct: 62  GVLIYYKAPHSYTGEDMVELNLHGNPRILKRALE-LFVNAGARLAEPGEFTKRAFLNGKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++A+LIS++TE+ R+++++ + GELS       + L  + +++EAD++F+E ED
Sbjct: 121 DLTQAEAVAELISAKTELARKVALKQLHGELSKHIRPLRETLLELLAYVEADIEFAE-ED 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   + ++V+  +  +   I+  +   K G+ IR G K+ I+G  N GKSSLFNAL K++
Sbjct: 180 IPTLTKEQVIQMVDKVIEGINELLKTAKTGKFIREGVKLAIVGRPNVGKSSLFNALLKEE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRD +   L ++G  V++ DTAGIRET D+VE+ G++R+  +V+ ADLIL
Sbjct: 240 RAIVTDIAGTTRDFIEETLQIKGVPVRLVDTAGIRETKDLVERIGVERSKQKVKEADLIL 299

Query: 304 LLKEIN---SKKEISF---PKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEGLE 352
            + + +   +++++      K  D I +  K DL        +  E    +S+  G GLE
Sbjct: 300 FVIDASQEITEEDLRIYEEIKEKDHIVVANKVDLGIRANLEKFKGEKIVKVSALKGTGLE 359

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EKDCGLDIIAENLR 410
           EL  +I   +    ++   +I    RH   L +    LE       EKD   +I   +LR
Sbjct: 360 ELSEEILKKVGANLEE-SVNIYISVRHETLLKKAKEVLERFKEEFREKDISPEIAMLDLR 418

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AS  LG+I G +  E LL  IFS FCIGK
Sbjct: 419 EASDYLGEILGEITTEDLLGKIFSTFCIGK 448


>gi|260581920|ref|ZP_05849716.1| tRNA modification GTPase TrmE [Haemophilus influenzae NT127]
 gi|260095113|gb|EEW79005.1| tRNA modification GTPase TrmE [Haemophilus influenzae NT127]
          Length = 452

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 163/455 (35%), Positives = 252/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATEVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKFD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    ++ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  + +             P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESVNLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQTG-IEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|251782601|ref|YP_002996904.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391231|dbj|BAH81690.1| tRNA(5-carboxymethylaminomethyl-2-thiouridylate)synthase
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 458

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 254/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +I + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNILAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E        IS 
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
            T + +  + ++I  +  +     +   +  S+ RH+  + + V+ LE  +        +
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLEAVNDGLALGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|19746040|ref|NP_607176.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS8232]
 gi|94990416|ref|YP_598516.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10270]
 gi|209559376|ref|YP_002285848.1| tRNA modification GTPase TrmE [Streptococcus pyogenes NZ131]
 gi|25009494|sp|Q8P161|MNME_STRP8 RecName: Full=tRNA modification GTPase mnmE
 gi|166234824|sp|Q1JH22|MNME_STRPD RecName: Full=tRNA modification GTPase mnmE
 gi|19748208|gb|AAL97675.1| putative thiophene degradation protein F [Streptococcus pyogenes
           MGAS8232]
 gi|94543924|gb|ABF33972.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS10270]
 gi|209540577|gb|ACI61153.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Streptococcus
           pyogenes NZ131]
 gi|323127423|gb|ADX24720.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 458

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 142/458 (31%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           ++ ADL+LL+   +       +  ++  ++ + I +  K+DL      E        IS 
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
            T + +  + ++I  +  +     +   +  S+ RH+  + + V+ LE  +        +
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLEAVNDGLALGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|223932526|ref|ZP_03624527.1| tRNA modification GTPase TrmE [Streptococcus suis 89/1591]
 gi|302024152|ref|ZP_07249363.1| tRNA modification GTPase TrmE [Streptococcus suis 05HAS68]
 gi|330833106|ref|YP_004401931.1| tRNA modification GTPase TrmE [Streptococcus suis ST3]
 gi|223898797|gb|EEF65157.1| tRNA modification GTPase TrmE [Streptococcus suis 89/1591]
 gi|329307329|gb|AEB81745.1| tRNA modification GTPase TrmE [Streptococcus suis ST3]
          Length = 457

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 152/457 (33%), Positives = 251/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F +   + K K        SL Y   +D  
Sbjct: 2   ITKEFDTITAISTPLGEGAIGIVRLSGTDAFAIASKVFKGKDLATVPSHSLNYGHIIDPA 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G++LD+ +L V  SP++FT ED  E + HGGIAV N IL+ L +    R+A PGEF++R
Sbjct: 62  TGQVLDEVILGVMRSPKTFTREDVIEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     ++  + G LS L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ V    L  +  + + +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDDIVEK G++R+   +
Sbjct: 241 NNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSF 346
           E ADLILL+   +       +  ++     + I +  K+DL          E    IS  
Sbjct: 301 EEADLILLVLNASEPLTEQDRNLLAISDLANRIVLLNKTDLEEQIEADQLPEDVIRISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
             + ++++  KI  +        +   +  S+ RH+  + Q V+ L+  +   E    +D
Sbjct: 361 KNQNIDQIEEKINQLFFENAGLVEQDATYLSNSRHISLIEQAVQSLQAVNDGLEMGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457


>gi|262377654|ref|ZP_06070874.1| tRNA modification GTPase TrmE [Acinetobacter lwoffii SH145]
 gi|262307413|gb|EEY88556.1| tRNA modification GTPase TrmE [Acinetobacter lwoffii SH145]
          Length = 452

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 167/456 (36%), Positives = 256/456 (56%), Gaps = 20/456 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M +   TI A++T      + +IRLSGP  +++ + + +K+ P  R A  R F+   G +
Sbjct: 1   MLNRTTTIAAIATPPGRGGVGVIRLSGPKSYEIAQQLTQKELPKARFAGFRQFYDAAGEV 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GL I FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAFEN
Sbjct: 61  MDEGLAICFPNPNSFTGEDVVELQGHGGPVIQNALLGRLLEL-GATAAKAGEFSMRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL++AE++ADLI + ++   R ++  + G  S+     +++L H+R  +EA +DF E
Sbjct: 120 GKLDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKVNAVLEQLIHLRLHVEAAIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +  ++LN +  + + ++      + G+++R G ++VI G  NAGKSSL NALA
Sbjct: 180 -EEIDFLADGKILNLLDGVSSAVTQVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKEGI+R   E+E AD
Sbjct: 239 GIERAIVTDIAGTTRDVLHEKITLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQAD 298

Query: 301 LILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYT-----EEYDHLISSF 346
           L+LL+ +++  ++             +    + IG K DL            + H+  S 
Sbjct: 299 LLLLVYDLSQGEDPLQLAQEYFAEHIEPKRLMLIGNKCDLTGAEAVIGDLNGFRHIAVSA 358

Query: 347 TGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDI 404
             E G++ LI  I +     F+    +  +  RHL  + +T  YL  A          ++
Sbjct: 359 KQETGVQALIEAITA--HAGFQPEEDTFIARTRHLDAMKRTQLYLAEACEQLVVYNAGEL 416

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 417 VAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 452


>gi|119947214|ref|YP_944894.1| tRNA modification GTPase TrmE [Psychromonas ingrahamii 37]
 gi|166234813|sp|A1T0N0|MNME_PSYIN RecName: Full=tRNA modification GTPase mnmE
 gi|119865818|gb|ABM05295.1| tRNA modification GTPase trmE [Psychromonas ingrahamii 37]
          Length = 455

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 164/458 (35%), Positives = 249/458 (54%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI A +T      + IIR+SGP    V + I   K P  R A    F      +
Sbjct: 1   MIKAIDTIVAQATAPGRGGVGIIRISGPDVEAVAKVILG-KVPKLRFAEYLSFSDQHNEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F +P SFTGED  E   HGG  V++ +++ +  + NLR ANPGEFS RAF N
Sbjct: 60  LDQGIALFFKAPNSFTGEDVLELQGHGGPVVMDMLIKAILSIKNLRGANPGEFSERAFMN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +E   + ++  + GE S    Q ++ L ++R ++EA +DF E
Sbjct: 120 DKLDLAQAEGIADLIEATSEQAAKSALHSLQGEFSEKIEQLVESLIYLRIYVEASIDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+V   S  ++   +  + +++ +   Q K G I+R+G K+VI G  NAGKSSL N+L 
Sbjct: 180 -EEVDFLSDGKISKGLYQIIDNLEAVKKQAKQGAILRDGMKVVIAGRPNAGKSSLLNSLV 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTDI GTTRDV+   + ++G  + I DTAG+RE  D +EK GI+R + E+  AD
Sbjct: 239 GVERAIVTDIAGTTRDVMREHIHIDGMPLHIIDTAGLREGADEIEKIGIERAWQEITTAD 298

Query: 301 LILLLKEIN-----SKKEI------SFPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343
            IL + +         ++I        PK++    +  K+DL       TE +DH    I
Sbjct: 299 RILFMLDATTTSAEDPRQIWPDFIDKLPKSVGLTVVRNKADLTGEAFSMTENHDHPVYRI 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TG+G++ L   +K I+  +         + +RHL  +    R+L    +  ++    
Sbjct: 359 SAKTGQGVDLLKEHLKDIMGYQGHTTS-GFMARRRHLEAIDNAQRHLLEGKVQLEEYKAG 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 ELLAEELRLTQQYLSEITGAFSSDDLLGKIFSSFCIGK 455


>gi|254788525|ref|YP_003075954.1| tRNA modification GTPase TrmE [Teredinibacter turnerae T7901]
 gi|237685930|gb|ACR13194.1| tRNA modification GTPase TrmE [Teredinibacter turnerae T7901]
          Length = 449

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 160/452 (35%), Positives = 246/452 (54%), Gaps = 21/452 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + I+R+SGP C Q+   I     P PR+A    FF  +  +LD+G+
Sbjct: 2   DTIAAIATAPGRGGVGIVRVSGPGCQQIAHRILG-LLPPPREAKYTPFFDRNKNLLDQGI 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F +P SFTGED  EF  HGG  +++ +L E+      RLA PGEFS RAF N K+DL
Sbjct: 61  ALYFSAPNSFTGEDVLEFQGHGGPVILDMLLAEIL-AAGARLARPGEFSERAFLNDKLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + ++   + ++  + G  S      +++L H+R ++E+ +DF E E++ 
Sbjct: 120 AQAEAIADLIDASSQQAAKQAINSLQGAFSEQINHLVEELIHLRMYVESAIDFPE-EEID 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  +V   +  +    S  +   + G ++R G K+VI G  NAGKSSL NALA++D+A
Sbjct: 179 FLSDGKVAAQLDNVLERASDILHTAQQGVLMREGMKVVIAGRPNAGKSSLLNALAQRDIA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+R   D VE+ GI+R + E++ AD ILL+
Sbjct: 239 IVTDIEGTTRDVLREQIHIDGMPLHIVDTAGLRAATDKVEQIGIERAWQEIDQADRILLM 298

Query: 306 KEINSKKEISFPKNI-----------DFIFIGTKSD-----LYSTYTEEYDHLISSFTGE 349
            +     ++S                    I  K D     L  T     +  +S+ TG 
Sbjct: 299 VDSTRLPDLSREDYWQQLSKHQPTLEKVTVIYNKIDDSGFTLPDTPAVYKEIALSAKTGA 358

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAEN 408
           G++ LI  +KS++  + +       + +RHL  +   + YL       +     +++AE+
Sbjct: 359 GIDALIAHLKSVMGYQ-QTGEGGFSARRRHLDAIQHALTYLNNGRNQLQLHAAGELLAED 417

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 418 LRLAQDHLSEITGKFTSDDLLGKIFSSFCIGK 449


>gi|147679252|ref|YP_001213467.1| tRNA modification GTPase TrmE [Pelotomaculum thermopropionicum SI]
 gi|189036204|sp|A5CY46|MNME_PELTS RecName: Full=tRNA modification GTPase mnmE
 gi|146275349|dbj|BAF61098.1| predicted GTPase [Pelotomaculum thermopropionicum SI]
          Length = 459

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 163/459 (35%), Positives = 251/459 (54%), Gaps = 25/459 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL----DGR 59
            +TI A+ST      I I+R+SGP   +V +     K+K + +  S R  +G     +G 
Sbjct: 3   DDTIAAISTPIGEGGIGIVRISGPDAVKVAKKFFLTKRKDWDQAGSHRLIYGHVFDREGN 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ LL    +P ++T ED  E + HGGI  +  +LE LA     RLA PGEFS+RAF 
Sbjct: 63  IVDEVLLSFMRAPRTYTREDVVEINCHGGIVPLRKVLE-LALANGARLAEPGEFSKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AES+ D+I S+TE   R+++  + G+LS        +L  + + +EA++DF 
Sbjct: 122 NGRLDLAQAESVIDIIRSKTEAGLRVAVSQLRGDLSRKVEDLQGRLLGLLAQVEANIDFP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +D++  + +++L     L  +I   + + + G+I R G   VI+G  N GKSSL NAL
Sbjct: 182 E-DDLEEATVEDILRSGEDLIEEIKEIVRRAEAGKIYREGISTVIIGRPNVGKSSLLNAL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            +++ AIVTDIPGTTRD++   +++ G  +KI DTAG+RET D VE+ G+++    VE A
Sbjct: 241 LRENRAIVTDIPGTTRDIIEEYINIRGIPLKIIDTAGLRETGDAVERIGVEKAREAVEQA 300

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST----------YTEEYDHLI 343
           DL+LL+ +            I        IFI  K+D+                     I
Sbjct: 301 DLVLLVLDAARGLTEEDYAIIEKVGGKKVIFIVNKADVREKKISSEGAARIAGGRPVLWI 360

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S+  G GL++L  KI  ++   +       I S+ RH   + +   +L E  S   ++  
Sbjct: 361 SALEGTGLDKLEEKIVEMVMGGQVYPKDELIISNTRHRMAMERAADHLAEAVSGIRQNVP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++A +LR A  SLG+ITG    E L+D IF+ FCIGK
Sbjct: 421 VDVVAIDLRAAWESLGEITGTTVTEDLIDRIFADFCIGK 459


>gi|205422224|sp|A3DAS7|MNME_SHEB5 RecName: Full=tRNA modification GTPase mnmE
          Length = 453

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 161/455 (35%), Positives = 251/455 (55%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P  R A    F    G+++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRISGDKASNVAMAVLG-HLPKTRYADYCDFKSASGQVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+
Sbjct: 61  GIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI +  E   + +++ + GE S    + +D++T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATCEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++ N +  + + +    +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYD---HLISSF 346
            + +  +   +             P N+    I  K+DL       TEE     + IS+ 
Sbjct: 300 FMVDGTTTAAVDPHAIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++
Sbjct: 360 TGLGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453


>gi|320546578|ref|ZP_08040893.1| tRNA modification GTPase TrmE [Streptococcus equinus ATCC 9812]
 gi|320448963|gb|EFW89691.1| tRNA modification GTPase TrmE [Streptococcus equinus ATCC 9812]
          Length = 457

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 142/457 (31%), Positives = 249/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLD 57
           +  E +TI A+ST     AI I+RLSG     + + + + K   K      +  +    D
Sbjct: 2   ITKEFDTIAAISTPLGEGAIGIVRLSGTDALDIAKKVYRGKDLSKVDSHTINYGHIVDPD 61

Query: 58  G-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++ V  SP++FT ED  E + HGG+AV N IL+ L      RLA PGEF++R
Sbjct: 62  NDEILDEVMVSVMLSPKTFTREDVIEINTHGGVAVTNEILQ-LVLRHGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSKLINDTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++  +       ++ + + +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTALIHEKTQEFQSLLENLLRTARRGKILREGLSTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           E ADL+LL+   +       +  +   K+ + I +  K+DL      +        IS  
Sbjct: 301 EEADLVLLVLNSSEPLTDQDRALLELSKDSNRIILLNKTDLPEKIEADQLPDDVIRISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
             E +  +  +I  +  +     +   +  S+ RH+  + + V+ L+  +   E    +D
Sbjct: 361 KNENINLIEERINQLFFDNAGIVEKDATYLSNARHISLIEKAVQSLQSVNEGLEMGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +L      LG+ITG    ++L++ +F++FC+GK
Sbjct: 421 LLQIDLTRCWEILGEITGDAAPDELINQLFTQFCLGK 457


>gi|157149742|ref|YP_001450550.1| tRNA modification GTPase TrmE [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189036214|sp|A8AXP0|MNME_STRGC RecName: Full=tRNA modification GTPase mnmE
 gi|157074536|gb|ABV09219.1| tRNA modification GTPase TrmE [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 457

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 142/458 (31%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +  +LD+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++
Sbjct: 61  QNQEVLDEVMIGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  +++ +       +  ++S ++  + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEMTTQLMREKTAEFEELLTSLLNTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           ++ ADL+LL+   +       K+ +   ++ + I +  K+DL      +        IS 
Sbjct: 300 LQEADLVLLVLNASEPLTDQDKQLLEISQDSNRIVLLNKTDLEEKIELDQLPTDIIKISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I  +        +   +  S+ RH+  + + +  L+      E    +
Sbjct: 360 LHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|15674224|ref|NP_268399.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. lactis
           Il1403]
 gi|14195270|sp|Q9CDH8|MNME_LACLA RecName: Full=tRNA modification GTPase mnmE
 gi|12725311|gb|AAK06340.1|AE006453_4 GTP-binding protein ThdF [Lactococcus lactis subsp. lactis Il1403]
 gi|326407874|gb|ADZ64945.1| tRNA modification GTPase [Lactococcus lactis subsp. lactis CV56]
          Length = 455

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 151/455 (33%), Positives = 256/455 (56%), Gaps = 17/455 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI+I+RLSG    ++ + + K K    + AS    +G    +
Sbjct: 3   LTQEFDTIAAISTPLGEGAIAIVRLSGTDALKIAQSVYKGKN-LTQVASHTINYGHIFEE 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            R++D+ ++ V  +P++FT ED  E + HGGIAV   IL+ L +    RLA PGEF++RA
Sbjct: 62  KRLVDEVMVSVMRAPKTFTREDIVEINTHGGIAVTQEILQLLLR-NGARLAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ DLI ++T+    ++++ + G LS +      ++    + +E ++D
Sbjct: 121 FLNGRIDLAQAESVMDLIRAKTDKAANIAVKQLDGSLSKMINNIRQEILESLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  +S+ +L      +  + + +S  K G+I+R G K  I+G  N GKSSL N
Sbjct: 181 YPEYDDVETMTSQMLLEKTAHFEQLLENLLSTAKRGKILREGLKTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+T   ++ G  +++ DTAGIRETDD+VE  G++R+   + 
Sbjct: 241 QLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDDLVEAIGVERSKKALA 300

Query: 298 NADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEYD----HLISSFT 347
            ADL+LL+ + +++      + +   KN + I +  K+DL               IS+  
Sbjct: 301 EADLVLLVLDASNELTDKDLELLELSKNSNRIVLLNKTDLPEKIDSTQISGDFIRISALK 360

Query: 348 GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDII 405
            E L  +  KI  I    + +    ++ S+ RH+  + + ++ L+ A S       +D+I
Sbjct: 361 NENLNAVEEKINQIFFAGEIEAKDATVLSNARHISIVEEALKALKEANSGLALGLPVDLI 420

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 QVDVTRCWQLLGEITGEAAPDELITQLFSQFCLGK 455


>gi|268593483|ref|ZP_06127704.1| tRNA modification GTPase TrmE [Providencia rettgeri DSM 1131]
 gi|291310904|gb|EFE51357.1| tRNA modification GTPase TrmE [Providencia rettgeri DSM 1131]
          Length = 454

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 166/454 (36%), Positives = 245/454 (53%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A +T      + I+R+SGP   QV E I   K P PR A    F   +G +LD+G
Sbjct: 4   NDTIVAQATPPGRGGVGILRVSGPKAAQVAE-IVLGKLPKPRYADYLPFRDEEGSVLDQG 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP P SFTGED  E   HGG  +++ +L  +  +  +R+ANPGEFS RAF N K+D
Sbjct: 63  IALYFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTIDGIRIANPGEFSERAFLNDKLD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +M  + G  SS   Q ++ LTH+R ++EA +DF + E++
Sbjct: 123 LAQAEAIADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFPD-EEI 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              S  ++   +  +  D+    SQ + G ++R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 182 DFLSDGKIEAKLNEVVADLEQVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREA 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L 
Sbjct: 242 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADHVLF 301

Query: 305 LKE-----INSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFT 347
           + +         +EI        P  +    I  K+D+     E  D+        S+  
Sbjct: 302 MVDSTTTNATEPQEIWPEFMARLPDELPVTVIRNKADMTGEPVEFIDNTRYPLIRLSARE 361

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIA 406
            +G++ L + +K  +            +  RHL  L+    +LE       +    +++A
Sbjct: 362 EKGIDLLRDHLKEAI-GFNSNTEGGFLARSRHLQALNAAAVHLEQGYDQLVNARSGELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQELSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|171779779|ref|ZP_02920735.1| hypothetical protein STRINF_01616 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281881|gb|EDT47315.1| hypothetical protein STRINF_01616 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 457

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 141/458 (30%), Positives = 252/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + + K    + AS    +G     
Sbjct: 2   ITKEFDTIAAISTPLGEGAIGIVRLSGTDALAIAQKVYRGKD-LSKVASHTINYGHIVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +  ILD+ ++ V  +P++FT E+  E + HGG+AV N IL+ L +    RLA PGEF++
Sbjct: 61  DNDEILDEVMVSVMLAPKTFTRENVIEINTHGGVAVTNEILQLLLR-QGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSKLINDTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + ++  K G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEMTTALIREKTQEFQTLLENLLATAKRGKILREGLSTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   
Sbjct: 240 LNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           +E ADL+LL+   +       +  +   K+ + I +  K+DL          +    IS 
Sbjct: 300 LEEADLVLLVLNSSEPLTDQDRALLELSKDSNRIILLNKTDLPEKIEADELPDDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++ +  +I  +  +     +   +  S+ RH+  + + V+ L+  +   K    +
Sbjct: 360 LKNQNIDLIEERINQLFFDNAGIVEKDATYLSNARHIGLIEKAVQSLQSVNEGLKAGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +F++FC+GK
Sbjct: 420 DLLQIDLTRCWEILGEITGEAAPDELITKLFTQFCLGK 457


>gi|322372979|ref|ZP_08047515.1| tRNA modification GTPase TrmE [Streptococcus sp. C150]
 gi|321278021|gb|EFX55090.1| tRNA modification GTPase TrmE [Streptococcus sp. C150]
          Length = 456

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 141/456 (30%), Positives = 247/456 (54%), Gaps = 18/456 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI I+RLSG     +   + K K       S    +G    +
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDAIAIANKVFKGKN-LETVDSHTINYGHIVEN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ ++ V  +P++FT ED  E + HGG+AV N IL+ L +    R+A PGEF++RA
Sbjct: 62  DDIIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIRS-GARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    +++  + G L +L      ++ +  + +E ++D
Sbjct: 121 FLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKNLINNTRQEILNTLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++  V       +  + + ++  K G+I+R G    I+G  N GKSSL N
Sbjct: 181 YPEYDDVEEVTTNLVREKTQEFQVLLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDD+VEK G++R+   +E
Sbjct: 241 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALE 300

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSFT 347
            ADL+LL+   +       +  +   +N + I +  K+DL          E    IS   
Sbjct: 301 EADLVLLVLNNSEPLTEQDRTLLDISQNSNRIILLNKTDLPQAIQLEELPEDVIPISVLK 360

Query: 348 GEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDI 404
            E ++++  +I  +  +     +   +  S+ RH+  + + +  LE      E    +D+
Sbjct: 361 NENIDKIEERINQLFFDNAGLVEKDATYLSNARHISLIEKALESLEAVNQGLELGMPVDL 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456


>gi|139473816|ref|YP_001128532.1| tRNA modification GTPase TrmE [Streptococcus pyogenes str.
           Manfredo]
 gi|166234826|sp|A2REM7|MNME_STRPG RecName: Full=tRNA modification GTPase mnmE
 gi|134272063|emb|CAM30302.1| tRNA modification GTPase TrmE [Streptococcus pyogenes str.
           Manfredo]
          Length = 458

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 142/458 (31%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGK-SLEQVASHTINYGHIIDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           ++ ADL+LL+   +       +  ++  ++ + I +  K+DL      E        IS 
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
            T + +  + ++I  +  +     +   +  S+ RH+  + + V+ LE  +        +
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLEAVNDGLALGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|322385140|ref|ZP_08058787.1| thiophene and furan oxidation protein ThdF [Streptococcus cristatus
           ATCC 51100]
 gi|321270764|gb|EFX53677.1| thiophene and furan oxidation protein ThdF [Streptococcus cristatus
           ATCC 51100]
          Length = 520

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 145/458 (31%), Positives = 251/458 (54%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I + K    + AS    +G     
Sbjct: 65  ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFRGKD-LSKVASHTLNYGHIVDP 123

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +  ILD+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 124 QNQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 182

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+     +++ + G LS L      ++ +  + +E +
Sbjct: 183 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSDLINSTRQEILNTLAQVEVN 242

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  +++ +    L  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 243 IDYPEYDDVEEATTEIIREKTLEFEQLLTHLLKTARRGKILREGISTAIIGRPNVGKSSL 302

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 303 LNNLLREDKAIVTDIEGTTRDVIEEYVNINGVPLKLIDTAGIRETDDLVEQIGVERSKKA 362

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           ++ ADL+LL+   +       K+ +   ++ + I +  K+DL      +        IS 
Sbjct: 363 LQEADLVLLVLNASEPLTDQDKQLLEISQDSNRIVLLNKTDLEEKIELDQLPANAIKISV 422

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++ ++I  +        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 423 LHNQNIDKIEDRINQLFFENAGILEQDATYLSNARHISLIKKAVESLQAVNQGLELGMPV 482

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 483 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 520


>gi|21910288|ref|NP_664556.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS315]
 gi|28895865|ref|NP_802215.1| tRNA modification GTPase TrmE [Streptococcus pyogenes SSI-1]
 gi|25453303|sp|Q8K7L5|MNME_STRP3 RecName: Full=tRNA modification GTPase mnmE
 gi|21904483|gb|AAM79359.1| putative thiophene degradation protein F [Streptococcus pyogenes
           MGAS315]
 gi|28811115|dbj|BAC64048.1| putative thiophene degradation protein F [Streptococcus pyogenes
           SSI-1]
          Length = 458

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 254/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E        IS 
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
            T + +  + ++I  +  +     +   +  S+ RH+  + +TV+ LE  +        +
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKTVQSLEAVNDGLALGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|163859322|ref|YP_001633620.1| tRNA modification GTPase TrmE [Bordetella petrii DSM 12804]
 gi|205829119|sp|A9IJ97|MNME_BORPD RecName: Full=tRNA modification GTPase mnmE
 gi|163263050|emb|CAP45353.1| putative tRNA modification GTPase [Bordetella petrii]
          Length = 452

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 163/448 (36%), Positives = 242/448 (54%), Gaps = 17/448 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
            I A++T      I ++R+SGP    +   +  ++   PR A    F    G  LD+G+ 
Sbjct: 8   PIAAIATAPGRGGIGVVRISGPDLSALARRLFGREL-TPRHAHYLPFTAETGEHLDEGIA 66

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRAFENGKI 123
           + F +P+S+TGED  E   HGG AV+  ILE   +      +RLA PGEF+RRAF N ++
Sbjct: 67  LYFRAPQSYTGEDVLELQGHGGPAVLRRILERCLQAGADLGVRLAEPGEFTRRAFLNDRM 126

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +    R +M  +SGE S+      D++ H+R  +EA LDF E E+
Sbjct: 127 DLAQAEAVADLIDASSVAAARGAMASLSGEFSARVNALSDRIVHLRMLVEATLDFPE-EE 185

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +      +    +  L  D+++ I+Q + G I+R G  +V+ G  N GKSSL NALA  D
Sbjct: 186 IDFLEKYQARPTLQALAADLATLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDD 245

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIVT I GTTRD +  ++ ++G  + I DTAG+R+TDD VE  GI RT+ E+E AD+IL
Sbjct: 246 IAIVTPIAGTTRDKVVQEIHIDGVPLHIVDTAGLRDTDDTVESIGIARTWKEIERADVIL 305

Query: 304 LLKEINSKKE-------ISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLEEL 354
            L++     +          P     + +  K DL       +     IS+  G GL+EL
Sbjct: 306 HLQDATQPADELDAQIVARLPARTPLLTVFNKVDLLDQPFQAQAGQLGISAREGAGLDEL 365

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLA 412
             ++ + L+           + +RH++ L +   +LE A+ +       LD+ AE LRLA
Sbjct: 366 RARLLA-LAGWNPGAESPWLARERHVHALQRAAEHLEAATEHAAQDDRVLDLFAEELRLA 424

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             SL  ITG    + LL  IFS FCIGK
Sbjct: 425 HDSLSSITGKFTSDDLLGEIFSSFCIGK 452


>gi|145637307|ref|ZP_01792968.1| tRNA modification GTPase [Haemophilus influenzae PittHH]
 gi|145269559|gb|EDK09501.1| tRNA modification GTPase [Haemophilus influenzae PittHH]
          Length = 452

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 165/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + K+  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILKIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  + +             P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESVDLSKVRSEFLAKLPSTLPVTMVRNKIDLNGEQASESEQGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQTG-MEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|256618548|ref|ZP_05475394.1| tRNA modification GTPase [Enterococcus faecalis ATCC 4200]
 gi|256598075|gb|EEU17251.1| tRNA modification GTPase [Enterococcus faecalis ATCC 4200]
          Length = 465

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 144/462 (31%), Positives = 250/462 (54%), Gaps = 24/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL---- 56
             E +TI A+ST     AISI+RLSG     +   + +   K   +  +    +G     
Sbjct: 5   TMEFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDP 64

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            + +++D+ +L V  +P++FT ED  E + HGGI VVN +  +L      R+  PGEF++
Sbjct: 65  QNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQL-LQLLLREGARMGEPGEFTK 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E +
Sbjct: 124 RAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVN 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL
Sbjct: 184 IDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSL 243

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   
Sbjct: 244 LNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKA 303

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST---------YTEEYD 340
           + ++DLILL+   +       ++ +   K +  + +  K DL +             E  
Sbjct: 304 LADSDLILLVLNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363

Query: 341 HLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEK 398
             +S  +  GL++L  KI  +    +  +   +  S+ RH+  L Q    L E+ +  E 
Sbjct: 364 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEVINGIEA 423

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 424 GMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|227364302|ref|ZP_03848395.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM2-3]
 gi|325683501|ref|ZP_08163017.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM4-1A]
 gi|227070615|gb|EEI08945.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM2-3]
 gi|324977851|gb|EGC14802.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM4-1A]
          Length = 477

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 140/462 (30%), Positives = 245/462 (53%), Gaps = 25/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
           N E +TI A+ST      ISIIR+SG    +V + I K K    + A+    +G      
Sbjct: 18  NSENDTIAAISTPVGEGGISIIRISGDDAVKVAQRIYKGKN-LAKVATHTINYGHIVDPD 76

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ ++ V  +P ++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 77  TDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQ-LVLSFGARMAEPGEFTKR 135

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL ++E++ DLI ++T+   ++++  + G+LS L       +  + + +E ++
Sbjct: 136 AFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLAQVEVNI 195

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  ++K +      ++  I   +   K G+++R+G    I+G  N GKSSL 
Sbjct: 196 DYPEYDAVEEMTTKLLKEKAADIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNVGKSSLL 255

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  +D AIVT++ GTTRDV+   +++ G  +K+ DTAGIR+T+D VEK G++R+   +
Sbjct: 256 NSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVERSRKAL 315

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDH 341
             ADL+LLL + +       ++ +   K+   I I  K+DL              +    
Sbjct: 316 GAADLVLLLIDSSNKLTDEDRQLLEATKDKQRIIILNKTDLPRKVDLAELKLLAGKSAVI 375

Query: 342 LISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEK 398
             S    EG+++L  +I  +  N+         + ++ RH+  L Q    L ++      
Sbjct: 376 ETSIVNYEGMDQLGEQIGHMFFNEGIESNQNNVMVTNARHIGLLHQANDALSDVLKGIND 435

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 436 GMPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 477


>gi|322411935|gb|EFY02843.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 458

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 142/458 (31%), Positives = 251/458 (54%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIVDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIVDEVMVSVMLAPKTFTRENVIEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQKLLKNLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           ++ ADL+LL+   +       +  +   ++ + I +  K+DL      E        IS 
Sbjct: 301 LQEADLVLLVLNASEPLTDQDRSLLYLSQDSNRIILLNKTDLEQKIELEQLPADLIPISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
            T   ++ + ++I  +  +     +   +  S+ RH+  + + V+ LE  +        +
Sbjct: 361 LTNHNIDLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLEAVNDGLALGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|116516848|ref|YP_816380.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae D39]
 gi|161410748|ref|NP_358514.2| tRNA modification GTPase TrmE [Streptococcus pneumoniae R6]
 gi|168491911|ref|ZP_02716054.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC0288-04]
 gi|32171825|sp|Q8DPZ8|MNME_STRR6 RecName: Full=tRNA modification GTPase mnmE
 gi|122278734|sp|Q04KR8|MNME_STRP2 RecName: Full=tRNA modification GTPase mnmE
 gi|116077424|gb|ABJ55144.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae D39]
 gi|183573804|gb|EDT94332.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC0288-04]
          Length = 457

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 254/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDATPDELITQLFSQFCLGK 457


>gi|319744919|gb|EFV97251.1| tRNA modification GTPase TrmE [Streptococcus agalactiae ATCC 13813]
          Length = 469

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 143/457 (31%), Positives = 250/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+R+SG    ++   I + K     +  +L Y   +D  
Sbjct: 14  ITKEFDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPD 73

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L V  +P++FT ED  E + HGGIAV N IL+ + +    R+A PGEF++R
Sbjct: 74  KNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILR-HGARMAEPGEFTKR 132

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    ++++ + G L +L      ++ +  + +E ++
Sbjct: 133 AFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNI 192

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++  +       +  + + +   + G+I+R G    I+G  N GKSSL 
Sbjct: 193 DYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPNVGKSSLL 252

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 253 NNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKAL 312

Query: 297 ENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSF 346
           E ADL+LL+        +  +  +   K  + I +  K+DL          E    IS  
Sbjct: 313 EEADLVLLVLNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKIEVNELPENVIPISVL 372

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
             E ++++  +I  I  +     +   +  S+ RH+  + + V  L+  +   E    +D
Sbjct: 373 ENENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLKAVNEGLELGMPVD 432

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 433 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 469


>gi|148545139|ref|YP_001272509.1| tRNA modification GTPase TrmE [Lactobacillus reuteri DSM 20016]
 gi|184154471|ref|YP_001842812.1| tRNA modification GTPase TrmE [Lactobacillus reuteri JCM 1112]
 gi|148532173|gb|ABQ84172.1| tRNA modification GTPase trmE [Lactobacillus reuteri DSM 20016]
 gi|183225815|dbj|BAG26332.1| thiophene and furan oxidation protein ThdF [Lactobacillus reuteri
           JCM 1112]
          Length = 462

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 140/462 (30%), Positives = 245/462 (53%), Gaps = 25/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
           N E +TI A+ST      ISIIR+SG    +V + I K K    + A+    +G      
Sbjct: 3   NSENDTIAAISTPVGEGGISIIRISGDDAVKVAQRIYKGKN-LAKVATHTINYGHIVDPD 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ ++ V  +P ++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 62  TDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQ-LVLSFGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL ++E++ DLI ++T+   ++++  + G+LS L       +  + + +E ++
Sbjct: 121 AFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  ++K +      ++  I   +   K G+++R+G    I+G  N GKSSL 
Sbjct: 181 DYPEYDAVEEMTTKLLKEKAADIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  +D AIVT++ GTTRDV+   +++ G  +K+ DTAGIR+T+D VEK G++R+   +
Sbjct: 241 NSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVERSRKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDH 341
             ADL+LLL + +       ++ +   K+   I I  K+DL              +    
Sbjct: 301 GAADLVLLLIDSSNKLTDEDRQLLEATKDKQRIIILNKTDLPRKVDLAELKLLAGKSAVI 360

Query: 342 LISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEK 398
             S    EG+++L  +I  +  N+         + ++ RH+  L Q    L ++      
Sbjct: 361 ETSIVNYEGMDQLGEQIGHMFFNEGIESNQNNVMVTNARHIGLLHQANDALSDVLKGIND 420

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 421 GMPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 462


>gi|332366815|gb|EGJ44556.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK1059]
          Length = 479

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 251/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 24  ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 83

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 84  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 142

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      K+ +  + +E ++
Sbjct: 143 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQKILNTLAQVEVNI 202

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ +   + G+I+R G    I+G  N GKSSL 
Sbjct: 203 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 262

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 263 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 322

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+   +       ++ +   ++ + I +  K+DL      +        IS  
Sbjct: 323 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKIELDQLPTDVIKISVL 382

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + +  L+      E    +D
Sbjct: 383 HNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPVD 442

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 443 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 479


>gi|238765479|ref|ZP_04626398.1| tRNA modification GTPase mnmE [Yersinia kristensenii ATCC 33638]
 gi|238696303|gb|EEP89101.1| tRNA modification GTPase mnmE [Yersinia kristensenii ATCC 33638]
          Length = 454

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 159/456 (34%), Positives = 244/456 (53%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      + I+R+SG +   V E +   K P PR A    F   DG  LD
Sbjct: 2   STTDTIVAQATPPGRGGVGILRVSGRAAAAVAEAVLG-KLPKPRYADYLPFKDADGSTLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K
Sbjct: 61  QGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R ++  + G  S    + ++ LTH+R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHKLVEALTHLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+    ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + I DTAG+RE +D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWHEIEQADRV 299

Query: 303 LLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L + +  + +               P  +    +  K+D+       +         +S+
Sbjct: 300 LFMVDGTTTEATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
            TGEG++ L N +K  +            + +RHL  L    ++L             ++
Sbjct: 360 RTGEGIDLLRNHLKQSM-GFTSNTEGGFLARRRHLQALETAAQHLVQGHEQLVSAYAGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|145634177|ref|ZP_01789888.1| tRNA modification GTPase [Haemophilus influenzae PittAA]
 gi|145268621|gb|EDK08614.1| tRNA modification GTPase [Haemophilus influenzae PittAA]
          Length = 452

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATEVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N + +  S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLENVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  +               P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQTG-IEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|307943442|ref|ZP_07658786.1| tRNA modification GTPase TrmE [Roseibium sp. TrichSKD4]
 gi|307773072|gb|EFO32289.1| tRNA modification GTPase TrmE [Roseibium sp. TrichSKD4]
          Length = 453

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 189/447 (42%), Positives = 264/447 (59%), Gaps = 14/447 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+S+G +PS +++IR+SGP    V   +C    P  RKAS+R     +G  LD+ L
Sbjct: 9   DTIYALSSGVVPSGVAVIRVSGPETQAVVRSLCGDVPPV-RKASVRVLRDGEGTALDEAL 67

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED AE H HGG AVV  +L  LA     R A PGEF+RRAFE G++DL
Sbjct: 68  VLYFEGPASFTGEDVAELHCHGGRAVVAAVLNTLAGFQGCRPAEPGEFTRRAFEKGRLDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E L+DLI++ETE QRR ++  M G L +LY  W  +L H+R+ IEAD DF++EEDV 
Sbjct: 128 TEVEGLSDLIAAETEQQRRQALRQMGGALGALYEDWRKRLIHMRALIEADFDFADEEDVP 187

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV  +   L  DI+ H+   K GE +R+G ++V++G  NAGKSSL NALA +DVA
Sbjct: 188 GSVADEVWAEADQLARDIAGHLETSKSGERLRSGLQVVLMGAPNAGKSSLLNALAGRDVA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+  GTTRDV+ + LDL GY V + DTAG+R+TD IVE+EGI+R       ADLIL  
Sbjct: 248 IVTEEAGTTRDVIEVHLDLGGYPVTLIDTAGLRQTDGIVEREGIRRAEERGRGADLILWA 307

Query: 306 K--------EINSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEE 353
                    + +S  + S   ++    + TK D             + L S+    G+ +
Sbjct: 308 VEPEGVKPSDPDSGLDDSIRSSVPVRSVRTKQDEIRFDIRLDQSAEEILCSTKVEGGMRD 367

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L++ +              + +  RH Y L++    L  A +  K    ++ AE+LR A+
Sbjct: 368 LLDFLTRFAQETISISEAPLATRARHRYFLNEAHACLIKA-VELKHLPEELRAEDLRQAA 426

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LG+ITG +DVE LLD+IF  FCIGK
Sbjct: 427 DALGRITGRIDVEDLLDVIFRDFCIGK 453


>gi|25010947|ref|NP_735342.1| tRNA modification GTPase TrmE [Streptococcus agalactiae NEM316]
 gi|77413158|ref|ZP_00789357.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 515]
 gi|32171831|sp|Q8E5T7|MNME_STRA3 RecName: Full=tRNA modification GTPase mnmE
 gi|23095326|emb|CAD46537.1| unknown [Streptococcus agalactiae NEM316]
 gi|77160776|gb|EAO71888.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 515]
          Length = 458

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 143/457 (31%), Positives = 250/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+R+SG    ++   I + K     +  +L Y   +D  
Sbjct: 3   ITKEFDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPD 62

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L V  +P++FT ED  E + HGGIAV N IL+ + +    R+A PGEF++R
Sbjct: 63  KNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILR-HGARMAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    ++++ + G L +L      ++ +  + +E ++
Sbjct: 122 AFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++  +       +  + + +   + G+I+R G    I+G  N GKSSL 
Sbjct: 182 DYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKAL 301

Query: 297 ENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSF 346
           E ADL+LL+        +  +  +   K  + I +  K+DL          E    IS  
Sbjct: 302 EEADLVLLVLNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKIEVNELPENVIPISVL 361

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
             E ++++  +I  I  +     +   +  S+ RH+  + + V  L+  +   E    +D
Sbjct: 362 ENENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLKAVNEGLELGMPVD 421

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 422 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|94988539|ref|YP_596640.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS9429]
 gi|166234823|sp|Q1JLX3|MNME_STRPC RecName: Full=tRNA modification GTPase mnmE
 gi|94542047|gb|ABF32096.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS9429]
          Length = 458

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 143/458 (31%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E        IS 
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPADLIPISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
            T + +  + ++I  +  +     +   +  S+ RH+  + + V+ LE  +        +
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLEAVNDGLALGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|52082648|ref|YP_081439.1| tRNA modification GTPase TrmE [Bacillus licheniformis ATCC 14580]
 gi|52788047|ref|YP_093876.1| tRNA modification GTPase TrmE [Bacillus licheniformis ATCC 14580]
 gi|319648514|ref|ZP_08002730.1| tRNA modification GTPase mnmE [Bacillus sp. BT1B_CT2]
 gi|81384063|sp|Q65CN1|MNME_BACLD RecName: Full=tRNA modification GTPase mnmE
 gi|52005859|gb|AAU25801.1| ThdF protein - tRNA modification [Bacillus licheniformis ATCC
           14580]
 gi|52350549|gb|AAU43183.1| ThdF [Bacillus licheniformis ATCC 14580]
 gi|317389593|gb|EFV70404.1| tRNA modification GTPase mnmE [Bacillus sp. BT1B_CT2]
          Length = 459

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 154/459 (33%), Positives = 253/459 (55%), Gaps = 25/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR-- 59
           +TI A+ST     AI+I+R+SGP    + + + K  +          ++ Y   +D    
Sbjct: 2   DTIAAISTPMGEGAIAIVRMSGPEALAIADKVYKGPRGKRLSSVDSHTINYGHIVDPETE 61

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++++ ++ V  +P++FT ED  E + HGG+  VN +L+ L      RLA PGEF++RAF
Sbjct: 62  KVVEEVMVSVLKAPKTFTREDIVEINCHGGLVTVNQVLQ-LVLREGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    ++M  M G LSSL  +   ++    + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSSLIKRLRAEILETLAHVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + K ++     +K +I + ++  + G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEYDDVEEMTHKMLIEKATKVKKEIEALLTTSEQGKILREGISTVIIGRPNVGKSSLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 241 LVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300

Query: 299 ADLILLLK---EINSKKEISF---PKNIDFIFIGTKSDLYSTYT---------EEYDHLI 343
           ADLILL+    E  S ++I      K +D I I  K+DL               +     
Sbjct: 301 ADLILLVLNYSESLSDEDIKLFEATKGMDIIVIVNKTDLEQKLDLDRVRELAGNQPVVTT 360

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCG 401
           S    EG++EL   I+S+      +    +  S+ RH+  L +  R +  A    E D  
Sbjct: 361 SLLKEEGIDELEEAIQSLFFTGAIESGDLTYVSNTRHISLLHEAKRAITDALEGIENDVP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 421 IDMVQIDLTRCWEVLGEIIGDAVHESLIDQLFSQFCLGK 459


>gi|327470938|gb|EGF16394.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK330]
          Length = 457

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 143/457 (31%), Positives = 252/457 (55%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+  ++       K+ +   ++ + I +  K+DL      +        IS  
Sbjct: 301 QEADLVLLVLNVSEPLTDQDKQLLEISQDSNRIVLLNKTDLEEKIELDQLPTDVIKISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + +  L+      E    +D
Sbjct: 361 HNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|50914157|ref|YP_060129.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10394]
 gi|73919891|sp|Q5XCB7|MNME_STRP6 RecName: Full=tRNA modification GTPase mnmE
 gi|50903231|gb|AAT86946.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS10394]
          Length = 458

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 142/458 (31%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           ++ +DL+LL+   + K        ++  ++ + I +  K+DL      E        IS 
Sbjct: 301 LQESDLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
            T + +  + ++I  +  +     +   +  S+ RH+  + + V+ LE  +        +
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLEAVNDGLALGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|68249586|ref|YP_248698.1| tRNA modification GTPase TrmE [Haemophilus influenzae 86-028NP]
 gi|81335985|sp|Q4QLQ9|MNME_HAEI8 RecName: Full=tRNA modification GTPase mnmE
 gi|68057785|gb|AAX88038.1| probable tRNA modification GTPase TrmE [Haemophilus influenzae
           86-028NP]
          Length = 452

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 254/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N + +  S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLENVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  +               P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L + +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLRDHLKQAMGFQTG-IEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|91795119|ref|YP_564770.1| tRNA modification GTPase TrmE [Shewanella denitrificans OS217]
 gi|91717121|gb|ABE57047.1| tRNA modification GTPase trmE [Shewanella denitrificans OS217]
          Length = 466

 Score =  431 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 160/455 (35%), Positives = 250/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +   K P  R A    F   D R++D+
Sbjct: 15  TTDTIVAQATAPGRGGVGIIRISGDLATNVAMAVLG-KVPKTRYADYCDFKDADDRVIDQ 73

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+
Sbjct: 74  GIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMQVSGVRIAKPGEFSEQAFLNDKL 133

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S    + ++++T++R ++EA +DF + E+
Sbjct: 134 DLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVEQVTNLRLYVEAAIDFPD-EE 192

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++ N +  +   + +     K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 193 VDFLSDGKIANALYRIIAKLDTVQDSAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 252

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VEK GI+R + E+  AD +L
Sbjct: 253 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTLDTVEKIGIERAWAEIATADRVL 312

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEY------DHLISSF 346
            + +  +   +             P  +    +  K+DL     E+        + IS+ 
Sbjct: 313 FMVDGTTTDAVDPHDIWPDFIDRLPTRLGVTVVRNKADLTGESLEKSQEQGFDVYRISAK 372

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++
Sbjct: 373 TGLGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAASHLQLGKEQLEVYLAGELL 431

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 432 AEELRMAQMALSEITGKFTSDDLLGKIFSSFCIGK 466


>gi|77361917|ref|YP_341492.1| tRNA modification GTPase TrmE [Pseudoalteromonas haloplanktis
           TAC125]
 gi|123589159|sp|Q3IK56|MNME_PSEHT RecName: Full=tRNA modification GTPase mnmE
 gi|76876828|emb|CAI88050.1| enzyme adding cmnm(5) to tRNA-s(2)U34, forming (with subsequent
           MnmG action) cmnm(5)s(2)U34-tRNA, an intermediate in
           mnm(5)s(2)U34-tRNA synthesis [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 454

 Score =  431 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 159/455 (34%), Positives = 243/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
            ++TI A +T      + IIR+SG     V E +   K P  R A    F  L G  LD+
Sbjct: 3   NQDTIAAQATAPGRGGVGIIRVSGSLAKSVAEKVVG-KIPKVRYADYVPFKSLAGEQLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ I F  P SFTGED  E   HGG  V++ +L+E++K+  +RLA PGEFS RAF N K+
Sbjct: 62  GIAIYFAGPNSFTGEDVLELQGHGGPVVLDMLLKEISKIEGVRLAKPGEFSERAFMNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI++ +E   + +++ + GE S      ++K+ H+R ++EA +DF + E+
Sbjct: 122 DLTQAEAIADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPD-EE 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  +V  D+  +   +++   Q K G I+R G ++VI G  NAGKSSL NALA ++
Sbjct: 181 IDFLSDGKVSGDLDAIIAQLNTVTDQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGRE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + ++G  + I DTAG+RE+ D+VE+ GI+R + E+  AD +L
Sbjct: 241 AAIVTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRESPDLVEQIGIERAWDEINQADRVL 300

Query: 304 LLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSF 346
            + +     +              P  +    I  K+DL           +     +S+ 
Sbjct: 301 FMLDGTDTIDTDPHKIWPEFMAKLPVGLGVTVIRNKADLSGDVVGMDQNQQYPVISLSAK 360

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
             +G+E +   +K+ +            + +RHL  L     +L+      E     +I+
Sbjct: 361 NADGIELVREHLKACIGFD-GATEGGFMARRRHLDALEHAAYHLDTGKAQLEMHIAGEIL 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 420 AEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454


>gi|313890071|ref|ZP_07823706.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121432|gb|EFR44536.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 458

 Score =  431 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 142/458 (31%), Positives = 251/458 (54%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG    ++   + K K      AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALKIANTVFKGKN-LHEVASHTINYGHIINP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +  ILD+ ++ V  +P++FT E+  E + HGGIAV N IL+ L K    R+A PGEF++
Sbjct: 62  DNQEILDEVMVTVMLAPKTFTRENVIEINTHGGIAVTNEILQLLIK-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINNTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQQFQALLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVERSKKV 300

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           ++ ADL+LL+   +       +  +   +  + + +  K+DL      +        IS 
Sbjct: 301 LKEADLVLLVLNASEPLTTQDRLLLELSQETNRLILLNKTDLPEKIETDQLPSDLVPISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++ + ++I  +  +     +   +  S+ RH+  + Q ++ L+  +   E D  +
Sbjct: 361 LQNKNIDMIEDRINQLFFDNAGLVEQDATYLSNARHISLIEQALQSLQAVNDGLEMDMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|148826352|ref|YP_001291105.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittEE]
 gi|166200480|sp|A5UD71|MNME_HAEIE RecName: Full=tRNA modification GTPase mnmE
 gi|148716512|gb|ABQ98722.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittEE]
          Length = 452

 Score =  431 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATEVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N + +  S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLENVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  +               P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEEGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQTG-IEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|309973499|gb|ADO96700.1| tRNA modification GTPase mnmE [Haemophilus influenzae R2846]
          Length = 461

 Score =  431 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 251/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 11  KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 69

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 70  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 129

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S      +D + ++R+++EA +DF + E++
Sbjct: 130 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNTLVDSVIYLRTYVEASIDFPD-EEI 188

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 189 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 248

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 249 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 308

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  +               P  +    +  K DL      E +        +S+ T
Sbjct: 309 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 368

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 369 HDGVKLLREHLKQAMGFQAG-MEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 426

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 427 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 461


>gi|300857411|ref|YP_003782395.1| putative tRNA modification GTPase [Clostridium ljungdahlii DSM
           13528]
 gi|300437526|gb|ADK17293.1| predicted tRNA modification GTPase [Clostridium ljungdahlii DSM
           13528]
          Length = 460

 Score =  431 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 155/462 (33%), Positives = 267/462 (57%), Gaps = 24/462 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGL 56
           M  E +TI AV+T      ISIIR+SG    ++   I K K        +  S+RY + +
Sbjct: 1   MMKEFDTIAAVATVLGEGGISIIRISGCDSLKIVNSIFKGKSNKNLIDMKPYSMRYGYIV 60

Query: 57  D---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           +   G +LD+ L+    SP+S+T ED+ E + HGG+     +LEE+ K    R+A PGEF
Sbjct: 61  EKSTGELLDEVLVSFMKSPKSYTSEDTVEINCHGGVVATKKVLEEVIKS-GARIAEPGEF 119

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG+IDL +AE++ D+I ++TE+  + +++  +G++S       +KL  + + IE
Sbjct: 120 TKRAFLNGRIDLSQAEAVIDIIRAKTELSMKSAVQQSTGKISKEINALREKLLEVIAHIE 179

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +D+ E ED++  +S +V   +  + ++I+  +S  + G+I+R+G   VI+G  N GKS
Sbjct: 180 ATVDYPE-EDLEEMTSDKVSMRLQEILDEINHILSTAEEGKIVRDGLNTVIVGKPNVGKS 238

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N+L +++ AIVTD+PGTTRDV+   ++++G  +K+ DTAGIRET+D+VEK G++R+ 
Sbjct: 239 SLLNSLIRENRAIVTDVPGTTRDVIEEYMNIDGIPIKVIDTAGIRETEDLVEKIGVERSK 298

Query: 294 LEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE--------Y 339
            +++ ADL++L+ + +       K+ +++ K+  +I +  K D+      +         
Sbjct: 299 QKIDEADLVILMLDSSEELDDEDKEIMNYVKDKKYIILLNKIDINDKINLDDICNLDSSC 358

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
               S  TG+GL+++   IK +      K      ++ RH   L +     +E     + 
Sbjct: 359 IIKTSIKTGKGLDKIKTCIKDLFFKGEVKPGDLFITNARHKEGLIRAKESCIEALGALKN 418

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D+ + ++R A  +LGKITG    E ++D IFS+FC+GK
Sbjct: 419 TSAIDLASIDIRNAWDNLGKITGDTLEEDIIDKIFSQFCLGK 460


>gi|148984971|ref|ZP_01818214.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP3-BS71]
 gi|182683965|ref|YP_001835712.1| tRNA modification GTPase [Streptococcus pneumoniae CGSP14]
 gi|147922669|gb|EDK73786.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP3-BS71]
 gi|182629299|gb|ACB90247.1| tRNA modification GTPase [Streptococcus pneumoniae CGSP14]
          Length = 479

 Score =  431 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 254/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 24  ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 82

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 83  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 141

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 142 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 201

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 202 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 261

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 262 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 321

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 322 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEDVIRISV 381

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 382 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 441

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 442 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 479


>gi|116513181|ref|YP_812088.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris
           SK11]
 gi|123025076|sp|Q02VP7|MNME_LACLS RecName: Full=tRNA modification GTPase mnmE
 gi|116108835|gb|ABJ73975.1| tRNA modification GTPase trmE [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 455

 Score =  431 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 150/455 (32%), Positives = 253/455 (55%), Gaps = 17/455 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI+I+RLSG    ++ + + K K    + AS    +G    +
Sbjct: 3   LTQEFDTIAAISTPLGEGAIAIVRLSGTDALKIAQSVYKGKN-LAQVASHTINYGHIFEE 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            R++D+ ++ V  +P++FT ED  E + HGGIAV   IL+ L +    RLA PGEF++RA
Sbjct: 62  ERLVDEVMVSVMRAPKTFTREDIVEINTHGGIAVTQEILQLLLR-NGARLAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ DLI ++T+    ++++ + G LS +       +    + +E ++D
Sbjct: 121 FLNGRIDLAQAESVMDLIRAKTDKAANIAVKQLDGSLSKMINNIRQDILESLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  +S+ +L      +  + + +S  K G+I+R G K  I+G  N GKSSL N
Sbjct: 181 YPEYDDVETMTSQMLLEKTAHFEQLLENLLSTAKRGKILREGLKTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+T   ++ G  +++ DTAGIRETDD+VE  G++R+   + 
Sbjct: 241 QLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDDLVEAIGVERSKKALA 300

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD----HLISSFT 347
            ADL+LL+ + +        + +   KN + I +  K+DL               IS+  
Sbjct: 301 EADLVLLVLDASLELTDKDLELLELSKNANRIVLLNKTDLPEKLDINQISGDFIRISALK 360

Query: 348 GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDII 405
            E L  +  KI  I    + +    ++ S+ RH+  + + ++ L+ A+        +D+I
Sbjct: 361 NENLSAVEEKINQIFFAGEIEAKDATVLSNARHISLVEEALKALKEANNGLALGLPVDLI 420

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 QVDVTRCWQLLGEITGEAAPDELITQLFSQFCLGK 455


>gi|194467398|ref|ZP_03073385.1| tRNA modification GTPase TrmE [Lactobacillus reuteri 100-23]
 gi|194454434|gb|EDX43331.1| tRNA modification GTPase TrmE [Lactobacillus reuteri 100-23]
          Length = 462

 Score =  431 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 140/462 (30%), Positives = 246/462 (53%), Gaps = 25/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
           N E +TI A+ST      ISIIR+SG    +V + I K K    + A+    +G      
Sbjct: 3   NSENDTIAAISTPVGEGGISIIRISGDDAVKVAQRIYKGKN-LAKVATHTINYGHIVDPD 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             + +D+ ++ V  +P ++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 62  TDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQ-LVLSFGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL ++E++ DLI ++T+   ++++  + G+LS L       +  + + +E ++
Sbjct: 121 AFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  ++K +      ++  I   +   K G+++R+G    I+G  N GKSSL 
Sbjct: 181 DYPEYDAVEEMTTKLLKEKAEDIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  +D AIVT++ GTTRDV+   +++ G  +K+ DTAGIR+T+D VEK G++R+   +
Sbjct: 241 NSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVERSRKAL 300

Query: 297 ENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYT---------EEYDH 341
             ADL+LLL + +++      + +   K+   I I  K+DL              +    
Sbjct: 301 GAADLVLLLIDSSNELTEEDYQLLEATKDKQRIIILNKTDLPRKVDLAELKSLAGKSAVI 360

Query: 342 LISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEK 398
             S    EG+++L  +I  +  N+         + ++ RH+  L Q    L ++      
Sbjct: 361 ETSIVNHEGMDQLGEQIGYMFFNEGIESNQNNVMVTNARHIGLLHQANDALSDVLKGIND 420

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 421 GMPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 462


>gi|332361128|gb|EGJ38932.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK1056]
          Length = 479

 Score =  431 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 252/457 (55%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 24  ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSEVESHTLNYGHIVDPQ 83

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 84  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 142

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 143 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 202

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 203 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 262

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 263 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 322

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+   +       ++ +   ++ + I +  K+DL      +        IS  
Sbjct: 323 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKIELDQLPTDVIKISVL 382

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I      K    +   +  S+ RH+  + + +  L+      E    +D
Sbjct: 383 HNQNIDKIEERINQFFFEKAGIIEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPVD 442

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 443 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 479


>gi|205422232|sp|Q12HM9|MNME_SHEDO RecName: Full=tRNA modification GTPase mnmE
          Length = 453

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 160/455 (35%), Positives = 250/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +   K P  R A    F   D R++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRISGDLATNVAMAVLG-KVPKTRYADYCDFKDADDRVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+
Sbjct: 61  GIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMQVSGVRIAKPGEFSEQAFLNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S    + ++++T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVEQVTNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++ N +  +   + +     K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIANALYRIIAKLDTVQDSAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTLDTVEKIGIERAWAEIATADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEY------DHLISSF 346
            + +  +   +             P  +    +  K+DL     E+        + IS+ 
Sbjct: 300 FMVDGTTTDAVDPHDIWPDFIDRLPTRLGVTVVRNKADLTGESLEKSQEQGFDVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+EEL   +KS++  +   L     + +RHL  L     +L++     E     +++
Sbjct: 360 TGLGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAASHLQLGKEQLEVYLAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMAQMALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|149375642|ref|ZP_01893411.1| tRNA modification GTPase TrmE [Marinobacter algicola DG893]
 gi|149360044|gb|EDM48499.1| tRNA modification GTPase TrmE [Marinobacter algicola DG893]
          Length = 456

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 163/460 (35%), Positives = 249/460 (54%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M +  +TI A++T    S + I+R+SGP    +   +   + P PR A    F    G +
Sbjct: 1   MFNATDTIAAIATAPGQSGVGIVRVSGPHATAIARQMLGFE-PRPRYAHYGPFLDTQGEL 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + FP+P SFTGED  E   HGG  +++ +L  + ++   RLA PGEFS RAF N
Sbjct: 60  IDEGIGLYFPNPHSFTGEDVFELQGHGGTVILDLLLRTVCEL-GARLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI S +E   R ++  + G  S      ++ +TH+R ++EA +DF E
Sbjct: 119 DKLDLTQAEAIADLIESSSEQAARCAVRSLQGVFSRRIDALVEAVTHLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +  +V ND+  +  D+   +++ + G I+R+G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGKVANDLQVIIQDLDIILAEAQQGTILRDGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT + GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI R + E+  AD
Sbjct: 238 GREAAIVTAVEGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDEVEQIGIARAWDEIRQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYT--EEYD------H 341
            ILL+ +  +  E              P       I  K DL       EE D       
Sbjct: 298 RILLMVDATTTPETEPHQLWPDFIDQLPSGAPLTVIRNKVDLTGEPAGFEELDASAAPVV 357

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            I++ + +GLE L + +K  +            + +RHL  L +    L       +  G
Sbjct: 358 RIAAKSADGLEVLRDHLKQCM-GFASTTEGGFIARRRHLDALERARVSLLQGEDQLQGYG 416

Query: 402 L-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE+LR A  SLG+ITG +  + LL  IFS FCIGK
Sbjct: 417 AGELLAEDLRAAQDSLGEITGAMTPDDLLGKIFSSFCIGK 456


>gi|71903433|ref|YP_280236.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS6180]
 gi|123639929|sp|Q48TS5|MNME_STRPM RecName: Full=tRNA modification GTPase mnmE
 gi|71802528|gb|AAX71881.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS6180]
          Length = 458

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 143/458 (31%), Positives = 252/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           ++ ADL+LL+   + K        ++  +  + I +  K+DL      E        IS 
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQGSNRIILLNKTDLEQKIELEQLPADLISISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
            T + +  + ++I  +  +     +   +  S+ RH+  + + V+ LE  +        +
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLEAVNDGLALGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|168487704|ref|ZP_02712212.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1087-00]
 gi|169834150|ref|YP_001694460.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225861000|ref|YP_002742509.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230463|ref|ZP_06964144.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255333|ref|ZP_06978919.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502963|ref|YP_003724903.1| tRNA modification GTP-binding protein TrmE [Streptococcus
           pneumoniae TCH8431/19A]
 gi|205415808|sp|B1IBH5|MNME_STRPI RecName: Full=tRNA modification GTPase mnmE
 gi|168996652|gb|ACA37264.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183569534|gb|EDT90062.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1087-00]
 gi|225727603|gb|ACO23454.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238558|gb|ADI69689.1| tRNA modification GTP-binding protein TrmE [Streptococcus
           pneumoniae TCH8431/19A]
 gi|327389399|gb|EGE87744.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04375]
 gi|332200613|gb|EGJ14685.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41317]
 gi|332201488|gb|EGJ15558.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47368]
          Length = 457

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 254/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|77407969|ref|ZP_00784719.1| tRNA modification GTPase TrmE [Streptococcus agalactiae COH1]
 gi|77173427|gb|EAO76546.1| tRNA modification GTPase TrmE [Streptococcus agalactiae COH1]
          Length = 458

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 143/457 (31%), Positives = 250/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+R+SG    ++   I + K     +  +L Y   +D  
Sbjct: 3   ITKEFDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPD 62

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L V  +P++FT ED  E + HGGIAV N IL+ + +    R+A PGEF++R
Sbjct: 63  KNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILR-HGARMAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    ++++ + G L +L      ++ +  + +E ++
Sbjct: 122 AFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++  +       +  + + +   + G+I+R G    I+G  N GKSSL 
Sbjct: 182 DYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARHGKILREGLSTAIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKAL 301

Query: 297 ENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSF 346
           E ADL+LL+        +  +  +   K  + I +  K+DL          E    IS  
Sbjct: 302 EEADLVLLVLNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKIEVNELPENVIPISVL 361

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
             E ++++  +I  I  +     +   +  S+ RH+  + + V  L+  +   E    +D
Sbjct: 362 ENENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLKAVNEGLELGMPVD 421

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 422 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|328541700|ref|YP_004301809.1| tRNA modification GTPase mnmE [polymorphum gilvum SL003B-26A1]
 gi|326411452|gb|ADZ68515.1| tRNA modification GTPase mnmE [Polymorphum gilvum SL003B-26A1]
          Length = 450

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 181/450 (40%), Positives = 264/450 (58%), Gaps = 17/450 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64
           +TI+A+S+G +P+ +++IR+SGP   ++   +  K  P PR+ +L      D G  +D+ 
Sbjct: 3   DTIYALSSGPVPAGVAVIRVSGPLTVEIVRKLSGKA-PTPRRIALGLLRRPDTGEAIDQA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F  P SFTGED AEF  HGG AVV  +LE LA  P  R A  GEF+RRAF+NG++D
Sbjct: 62  VVLFFKGPSSFTGEDVAEFQCHGGRAVVAAVLECLAAFPGTRPAEAGEFTRRAFDNGRMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI++ETE QRR +   M G L  LY  W  +L  +R+ IEAD DF++EEDV
Sbjct: 122 LTEVEGLADLIAAETEAQRRQAFRQMEGWLGRLYDGWRGRLVQMRAMIEADFDFADEEDV 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               +  V +    L  DI +H+ Q   GE +R G ++V++G  NAGKSSL NALA +DV
Sbjct: 182 PGSVADGVWDAAAGLLRDIDAHLEQSGRGERLRQGLQVVLMGAPNAGKSSLLNALAGRDV 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+  GTTRDV+ + LDL+GY V ++DTAG+R     VE+EGI+R       ADLIL 
Sbjct: 242 AIVTEEAGTTRDVIEVHLDLDGYPVTLADTAGLRAEAGRVEREGIRRATERGRGADLILW 301

Query: 305 LKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLISSFTGEG 350
             E              E      +    + TK+DL +    +         +S+ TG G
Sbjct: 302 AAEPGGPLPEDPLEGLPEAVRAAGVPVWMLRTKTDLVTPPERDSSEMSLVIPVSTQTGMG 361

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           ++ L++++    +         + + +RH +HL+        A++  +    ++ AE+LR
Sbjct: 362 IKSLLDRLSCFATETLSLGEAPLATRQRHRFHLAACRDA-LAAAVASRGLPAELRAEDLR 420

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A+ +LG+ITG +DVE LLD+IF +FCIGK
Sbjct: 421 RAADALGRITGRIDVEDLLDVIFREFCIGK 450


>gi|52424535|ref|YP_087672.1| tRNA modification GTPase TrmE [Mannheimia succiniciproducens
           MBEL55E]
 gi|81387495|sp|Q65VC3|MNME_MANSM RecName: Full=tRNA modification GTPase mnmE
 gi|52306587|gb|AAU37087.1| ThdF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 454

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 163/455 (35%), Positives = 250/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
            KETI A +T      + I+R+SGP   +V + +  K+   PR A+   F   DG ILD+
Sbjct: 3   TKETIVAQATPIGRGGVGILRVSGPLATEVAKAVVDKEL-KPRMANYLPFKDEDGTILDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F SP SFTGED  EF  HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+
Sbjct: 62  GIALYFKSPNSFTGEDVVEFQGHGGQVVLDLLLKRILQVKGVRLARPGEFSEQAFLNDKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI++ +E   R +++ + GE S    Q +D + ++R+++EA +DF + E+
Sbjct: 122 DLAQAEAIADLINASSEQAARSALKSLQGEFSKKINQLVDSVIYLRTYVEAAIDFPD-EE 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  ++   +  L   +    S+ K G I+R G K+VI G  NAGKSSL NALA ++
Sbjct: 181 IDFLADGKIEGHLNDLIGQLDKVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGRE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD ++
Sbjct: 241 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGITRAWNEIEQADRVI 300

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDL--YSTYTEEYD----HLISSF 346
           L+ +                    P NI    +  KSDL       EE +      +S+ 
Sbjct: 301 LMLDSTDPDSKDLDQAKAEFLSKLPGNIPVTIVRNKSDLSGEKESIEEQEGFTVIRLSAQ 360

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDII 405
           T +G+  L   +K  +  +         + +RHL  L     +L++  +        +++
Sbjct: 361 TQQGVSLLREHLKQSMGYQTGT-EGGFLARRRHLEALEHAAEHLQIGRVQLTQFHAGELL 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+    LG+ITG    + LL  IFS FCIGK
Sbjct: 420 AEELRIVQDYLGEITGKFTSDDLLGNIFSSFCIGK 454


>gi|167855706|ref|ZP_02478462.1| tRNA modification GTPase TrmE [Haemophilus parasuis 29755]
 gi|167853162|gb|EDS24420.1| tRNA modification GTPase TrmE [Haemophilus parasuis 29755]
          Length = 452

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 163/454 (35%), Positives = 248/454 (54%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + +   K P PR A    F   DG +LD+G
Sbjct: 2   KETIVAQATPIGRGGIGILRVSGPLATEVAQAVLG-KCPKPRIADYLPFKDEDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L  + K+  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPHSFTGEDVLELQGHGGQVILDLLLNRILKVKGVRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   +++   + K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEAKLNEIIAQLANVRQEAKQGTILREGMKVVIAGKPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VEK GIKR + E+E AD +LL
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIKRAWDEIEQADHVLL 299

Query: 305 LKEINSKKEISF-----------PKNIDFIFIGTKSDLYST------YTEEYDHLISSFT 347
           + + N  +  SF           PKNI    I  K DL                 +S+ T
Sbjct: 300 MIDSNESQADSFQQEWATFLAKLPKNIPVTVIRNKVDLTGEAESLVQADNFTVIRLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIA 406
             G++ L   +K  +  +         + +RHL  L     +LE   +        +++A
Sbjct: 360 KVGVDLLREHLKKSMGYQ-SSTEGGFIARRRHLVALETAAEHLERGHIQLTQFYAGELLA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 419 EELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|329115888|ref|ZP_08244605.1| tRNA modification GTPase TrmE [Streptococcus parauberis NCFD 2020]
 gi|326906293|gb|EGE53207.1| tRNA modification GTPase TrmE [Streptococcus parauberis NCFD 2020]
          Length = 458

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 140/458 (30%), Positives = 248/458 (54%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + K K      AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGSQALDIAKSVFKGKD-LASVASHTINYGHILDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ILD+ ++ V   P++FT ED  E + HGGIAV N IL+ L K    R+A PGEF++
Sbjct: 62  DKDEILDEVMVSVMREPKTFTREDVVEINTHGGIAVTNEILQLLIK-HGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G L  L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLKQLIDDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       +  + + +   + G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALMREKTQEFQTLLENLLRTARRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+T+DIVEK G++R+   
Sbjct: 241 LNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRDTEDIVEKIGVERSKKA 300

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           +  ADL+LL+   + K        +   ++ + I +  K+DL     ++        IS 
Sbjct: 301 LNEADLVLLVLNASEKLTEQDHILLDLSQDSNRIILLNKTDLEVQIEKDQLPSDYIEISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              E ++++ ++I  +  +     +   +  S+ RH+  + + V+ L+  +        +
Sbjct: 361 LNNENIDQIEDRINQLFFDNAGLVEHDATYLSNARHISLIEKAVQSLQAVNDGLALGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|94994338|ref|YP_602436.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10750]
 gi|166234825|sp|Q1J6U1|MNME_STRPF RecName: Full=tRNA modification GTPase mnmE
 gi|94547846|gb|ABF37892.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS10750]
          Length = 458

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 143/458 (31%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  NTGTIVDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           ++ ADL+LL+   + K        ++  ++ + I +  K+DL      E        IS 
Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPADLISISV 360

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
            T + +  + ++I  +  +     +   +  S+ RH+  + + V+ LE  +        +
Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLEAVNDGLALGMPV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|22537039|ref|NP_687890.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 2603V/R]
 gi|76788077|ref|YP_329621.1| tRNA modification GTPase TrmE [Streptococcus agalactiae A909]
 gi|77410695|ref|ZP_00787054.1| tRNA modification GTPase TrmE [Streptococcus agalactiae CJB111]
 gi|32171818|sp|Q8CX13|MNME_STRA5 RecName: Full=tRNA modification GTPase mnmE
 gi|123601915|sp|Q3K1I2|MNME_STRA1 RecName: Full=tRNA modification GTPase mnmE
 gi|22533896|gb|AAM99762.1|AE014231_20 tRNA modification GTPase TrmE [Streptococcus agalactiae 2603V/R]
 gi|76563134|gb|ABA45718.1| tRNA modification GTPase TrmE [Streptococcus agalactiae A909]
 gi|77163231|gb|EAO74183.1| tRNA modification GTPase TrmE [Streptococcus agalactiae CJB111]
          Length = 458

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 142/457 (31%), Positives = 250/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+R+SG    ++   I + K     +  +L Y   +D  
Sbjct: 3   ITKEFDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPD 62

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L V  +P++FT ED  E + HGGIAV N IL+ + +    R+A PGEF++R
Sbjct: 63  KNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILR-HGARMAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    ++++ + G L +L      ++ +  + +E ++
Sbjct: 122 AFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++  +       +  + + +   + G+I+R G    I+G  N GKSSL 
Sbjct: 182 DYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKAL 301

Query: 297 ENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSF 346
           E ADL+LL+        +  +  +   K  + I +  K+DL          +    IS  
Sbjct: 302 EEADLVLLVLNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKIEVNELPKNVIPISVL 361

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
             E ++++  +I  I  +     +   +  S+ RH+  + + V  L+  +   E    +D
Sbjct: 362 ENENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLKAVNEGLELGMPVD 421

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 422 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|319404912|emb|CBI78513.1| tRNA modification GTPase [Bartonella rochalimae ATCC BAA-1498]
          Length = 435

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 191/436 (43%), Positives = 270/436 (61%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G LPS ++I+RLSGP    + + +C    P  R          DG  LD  L
Sbjct: 2   DTIFAISSGLLPSGVAIVRLSGPRVKYIVKTLCG-CLPKARLMHYGNLTARDGSFLDSAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HG  AVVN  L+EL      RLA  GEFSRRAF  GK+DL
Sbjct: 61  TVFFPAPHSFTGEDCAEFHLHGSKAVVNRFLDELTTFEECRLAEAGEFSRRAFIEGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AESLADLI +ETE QRRL++ G SG L+ LY  W   L   R+ IEA+LDFS+E D+ 
Sbjct: 121 IQAESLADLIQAETESQRRLAVMGTSGTLTKLYRDWRHILITARALIEAELDFSDENDIP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           N  S +V  DI  L + +  HIS G+   I+R+G KIVI+G  N+GKSS+ N L+ + VA
Sbjct: 181 NSVSDKVWKDIKKLYHSLCEHISAGERASILRDGIKIVIVGAPNSGKSSILNRLSGRSVA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++  GTTRD L + L L G LV  +DTAG+R+T++ +E  GI++    +  ADL++ +
Sbjct: 241 IVSEEEGTTRDALEVRLVLSGLLVLFTDTAGLRKTENTIELLGIEKAKQHIVEADLVIFV 300

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            ++N+ +EI+ PK + +   +G K DL       +    S+ +G   +  I +I+     
Sbjct: 301 YDMNNPQEINLPKTSAEIWHVGNKLDLCEGNKARWPIQFSTLSGLNFDYFIKEIELFCLR 360

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +  ++  +IP+ KR L  L +    +  AS+N     L + AE+LR AS  LG+I G +D
Sbjct: 361 RATEIGDAIPARKRQLQLLKEAAEEI-NASMNSTSLDLSLCAEHLRRASHILGRIVGDID 419

Query: 425 VEQLLDIIFSKFCIGK 440
           VE LLD+IFS+FC+GK
Sbjct: 420 VEDLLDVIFSEFCVGK 435


>gi|270292694|ref|ZP_06198905.1| thiophene and furan oxidation protein ThdF [Streptococcus sp. M143]
 gi|270278673|gb|EFA24519.1| thiophene and furan oxidation protein ThdF [Streptococcus sp. M143]
          Length = 475

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 146/458 (31%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 20  ITREFDTIVAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 78

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 79  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 137

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 138 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 197

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 198 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 257

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 258 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 317

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL          E    IS 
Sbjct: 318 LKEADLVLLVLNASEQLTAQDRQLLEISQDTNRIILLNKTDLPEAIETSELPEDVIRISV 377

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++++  +I  +        +   +  S+ RH+  + + V  L+  +   E    +
Sbjct: 378 LKNQNIDKIEERINDLFFENAGLVEQDATYLSNARHISLIKKAVESLQAVNEGLELGMPV 437

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 438 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 475


>gi|94501615|ref|ZP_01308132.1| tRNA modification GTPase [Oceanobacter sp. RED65]
 gi|94426298|gb|EAT11289.1| tRNA modification GTPase [Oceanobacter sp. RED65]
          Length = 455

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 154/459 (33%), Positives = 236/459 (51%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI A++T      + I+R+SG     + + I   + P  R A    F   +  +
Sbjct: 1   MQLNTDTIAAIATPPGRGGVGIVRVSGKKAKAIAQQILGFE-PKVRFAHYCPFKDENDEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL + F  P SFTGED  E   HGG  +++ +L+ +  +   R A PGEFS RAF N
Sbjct: 60  LDEGLALFFEGPNSFTGEDVLELQGHGGPVILDFLLQRVLAL-GARAARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI S +E   R ++  + G  S    + +D L ++R ++EA +DF E
Sbjct: 119 DKMDLTQAEAIADLIDSASEQAARCAVRSLQGAFSQRVKELVDALINLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  +V  D+  + + +     +   G I+R G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKVEADLHQVMDALKQVQQEANQGSILREGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVT I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD
Sbjct: 238 GRDTAIVTHIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAPDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYSTYT-------EEYDHL 342
            +LL+      +    K I        P       I  K DL +                
Sbjct: 298 RVLLMVDSTETDATDPKSIWPEFVDKLPHPERITVIRNKVDLTNEKAGMDEATQNSPIVR 357

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +++  G+G+ EL   +K+I+            + +RH+  L+Q   +L+           
Sbjct: 358 LAAKQGDGVTELREHLKTIMGYSATS-EGGFIARRRHIEALNQADTFLQSGRDQLLGAAA 416

Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE+LR+A  +L +ITG    + LL  IF  FCIGK
Sbjct: 417 GELLAEDLRMAQNALNEITGEFSSDDLLGKIFGSFCIGK 455


>gi|325694429|gb|EGD36338.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK150]
          Length = 457

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 142/457 (31%), Positives = 249/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G L +L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLFNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLCEDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+   +       ++ +   K  + I +  K+DL      +        IS  
Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISKGSNRIVLLNKTDLEEKIELDQLPADAIKISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + +  L+      E    +D
Sbjct: 361 HNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|309800286|ref|ZP_07694459.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1302]
 gi|308116070|gb|EFO53573.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1302]
          Length = 457

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 145/458 (31%), Positives = 254/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    L  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTLEFEQLLTNLLKTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL          +    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPEAIETSELPDAVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+  +   E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|296134494|ref|YP_003641741.1| tRNA modification GTPase TrmE [Thermincola sp. JR]
 gi|296033072|gb|ADG83840.1| tRNA modification GTPase TrmE [Thermincola potens JR]
          Length = 458

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 167/459 (36%), Positives = 249/459 (54%), Gaps = 25/459 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF------PRKASLRYFFGLDG 58
            +TI A+ T    + I IIR+SG    ++ + I + K                +     G
Sbjct: 2   DDTIAAIGTPIGAAGIGIIRVSGEDAIEIVDRIFRSKNKKNLHEVPSHNIVYGHIVDEKG 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ V  +P+SFT E+  E + HGG   V   LE + K    RLA PGEF++RAF
Sbjct: 62  EVIDEVLVTVMLAPKSFTTENVVEINCHGGTVAVRKTLEAVLKA-GARLAEPGEFAKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AES+ DLI+++T    R+++  + G+LS+       KL  +R+ IEA +DF
Sbjct: 121 LNGRIDLAQAESIMDLINAKTAASLRVAVGQLEGKLSAQIKDIRAKLLELRAHIEAGIDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D+++ S +++    + LK+ I   +     G+I R G K VI+G  N GKSSL NA
Sbjct: 181 PEH-DIEDLSKEQIKVATVELKSRIDKILESADSGKIFREGLKTVIIGKPNVGKSSLLNA 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L K+  AIVTDIPGTTRDV+   + + G  +KI DTAGIRET+D+VEK G++R+   +E 
Sbjct: 240 LVKEKRAIVTDIPGTTRDVIEEFVSIRGIPLKILDTAGIRETEDVVEKIGVQRSKEALEQ 299

Query: 299 ADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---------I 343
           AD  L + ++ S+      +  +F K++  I I  K+DL      +             +
Sbjct: 300 ADFFLFVVDVASEISSEDMEIAAFLKDLSGIIIANKTDLTGGLNRDLQKELGLDVPVVAM 359

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCG 401
           S   G+GL+EL  KI  I+  N+F  +   + S+ RH   L+    YL  +      +  
Sbjct: 360 SLLNGQGLDELEEKIVDIVYNNEFHSVDEILVSNVRHERALTAASEYLTGVLETLANNMP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D +  +L  A   LGKITG    E LLD IFS+FCIGK
Sbjct: 420 MDCVTIDLNSAWEELGKITGETVGEDLLDQIFSQFCIGK 458


>gi|146319108|ref|YP_001198820.1| tRNA modification GTPase TrmE [Streptococcus suis 05ZYH33]
 gi|146321314|ref|YP_001201025.1| tRNA modification GTPase TrmE [Streptococcus suis 98HAH33]
 gi|253752156|ref|YP_003025297.1| tRNA modification GTPase TrmE [Streptococcus suis SC84]
 gi|166234827|sp|A4W2N6|MNME_STRS2 RecName: Full=tRNA modification GTPase mnmE
 gi|166234829|sp|A4VWD1|MNME_STRSY RecName: Full=tRNA modification GTPase mnmE
 gi|145689914|gb|ABP90420.1| Predicted GTPase [Streptococcus suis 05ZYH33]
 gi|145692120|gb|ABP92625.1| Predicted GTPase [Streptococcus suis 98HAH33]
 gi|251816445|emb|CAZ52081.1| tRNA modification GTPase TrmE [Streptococcus suis SC84]
          Length = 457

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 150/457 (32%), Positives = 249/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F +   + K K        SL Y   +D  
Sbjct: 2   ITKEFDTIAAISTPLGEGAIGIVRLSGTDAFAIASTVFKGKDLATVPSHSLNYGHAIDPA 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G++LD+ ++    SP++FT ED  E + HGGIAV N IL+ L +    R+A PGEF++R
Sbjct: 62  TGQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     ++  + G LS L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ V    L  +  + + +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDDIVEK G++R+   +
Sbjct: 241 NNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSF 346
           E ADLILL+   +       +  ++     + I +  K+DL          E    IS  
Sbjct: 301 EEADLILLVLNASEPLTEQDRNLLAISDMANRIVLLNKTDLEEQIEVDQLPEDVIRISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLD 403
             + ++++  KI  +        +   +  S+ RH+  + Q V+ L   +   K    +D
Sbjct: 361 QNQNIDQIEEKINQLFFENAGLVEQDATYLSNSRHISLIEQAVQSLHAVNDGLKVGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457


>gi|125625274|ref|YP_001033757.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|205415771|sp|A2RP37|MNME_LACLM RecName: Full=tRNA modification GTPase mnmE
 gi|124494082|emb|CAL99083.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300072084|gb|ADJ61484.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 455

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 151/455 (33%), Positives = 254/455 (55%), Gaps = 17/455 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           +  E +TI A+ST     AI+I+RLSG    ++ + + K K    + AS    +G    +
Sbjct: 3   LTQEFDTIAAISTPLGEGAIAIVRLSGTDALKIAQSVYKGKN-LAQVASHTINYGHIFEE 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            R++D+ ++ V  +P++FT ED  E + HGGIAV   IL+ L +    RLA PGEF++RA
Sbjct: 62  ERLVDEVMVSVMRAPKTFTREDIVEINTHGGIAVTQEILQLLLR-NGARLAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ DLI ++T+    ++++ + G LS +      ++    + +E ++D
Sbjct: 121 FLNGRIDLAQAESVMDLIRAKTDKAANIAVKQLDGSLSKMINNIRQEILESLAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  +S+ +L      +  + + +S  K G+I+R G K  I+G  N GKSSL N
Sbjct: 181 YPEYDDVETMTSQMLLEKTAHFEQLLENLLSTAKRGKILREGLKTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+T   ++ G  +++ DTAGIRETDD+VE  GI+R+   + 
Sbjct: 241 QLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDDLVEAIGIERSKKALA 300

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD----HLISSFT 347
            ADL+LL+ + +        + +   KN + I +  K+DL               IS+  
Sbjct: 301 EADLVLLVLDASLELTDKDLELLELSKNANRIVLLNKTDLPEKLDINQISGDFIRISALK 360

Query: 348 GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDII 405
            E L  +  KI  I    + +    ++ S+ RH+  + + ++ L+ A+        +D+I
Sbjct: 361 NENLSAVEEKINQIFFAGEIEAKDATVLSNARHISLVEEALKALKEANNGLALGLPVDLI 420

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 QVDVTRCWQLLGEITGEAAPDELITQLFSQFCLGK 455


>gi|325687543|gb|EGD29564.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK72]
 gi|327474426|gb|EGF19832.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK408]
          Length = 457

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 142/457 (31%), Positives = 252/457 (55%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLNKVESHTLNYGHIIDPQ 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ + +    R+A PGEF++R
Sbjct: 62  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQLVIR-EGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGLPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+   +       ++ +   K+ + I +  K+DL      +        IS  
Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISKDSNRIVLLNKTDLEEKIELDLLPTDVIKISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + +  L+      E    +D
Sbjct: 361 HNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|212632921|ref|YP_002309446.1| tRNA modification GTPase TrmE [Shewanella piezotolerans WP3]
 gi|212554405|gb|ACJ26859.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Shewanella piezotolerans WP3]
          Length = 453

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 158/455 (34%), Positives = 247/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P  R A    F    G ++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGDLASNVAMAVLG-HIPKTRYADYCDFKDEQGGVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + +   LR+A PGEFS +AF N K+
Sbjct: 61  GIALYFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMETEGLRIAKPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + ++  + GE S+   + ++++T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALNSLQGEFSTQVHELVEQVTNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++   +  +   + +  +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKISGSLNRIITKLDTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VEK GI+R + E++ AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTADTVEKIGIERAWDEIKTADQVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSF 346
            + +  +   +             PKN+    +  K+DL       +       H IS+ 
Sbjct: 300 FMVDGTTTNAVDPHEIWPDFIDRLPKNLGVTVVRNKADLTGETLEITEEAGHPVHRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+  L   +KS++  +   L     + +RHL  L     +L++     E     +++
Sbjct: 360 TGLGVPALQQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLDLGREQLEVYQAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMAQLALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|125718082|ref|YP_001035215.1| tRNA modification GTPase TrmE [Streptococcus sanguinis SK36]
 gi|166234828|sp|A3CNB0|MNME_STRSV RecName: Full=tRNA modification GTPase mnmE
 gi|125497999|gb|ABN44665.1| tRNA modification GTPase, possibly iron-binding, putative
           [Streptococcus sanguinis SK36]
          Length = 457

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 252/457 (55%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSEVESHTLNYGHIVDPQ 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGLPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+   +       ++ +   K+ + I +  K+DL      +        IS  
Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISKDSNRIVLLNKTDLEEKIELDLLPTDVIKISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + +  L+      E    +D
Sbjct: 361 HNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|319897487|ref|YP_004135684.1| tRNA modification gtpase mnme [Haemophilus influenzae F3031]
 gi|317432993|emb|CBY81364.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3031]
          Length = 452

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IVLYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                 ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLVDGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAIDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  +               P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVQLLREHLKQAMGFQTG-MEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|168187283|ref|ZP_02621918.1| tRNA modification GTPase TrmE [Clostridium botulinum C str. Eklund]
 gi|169294804|gb|EDS76937.1| tRNA modification GTPase TrmE [Clostridium botulinum C str. Eklund]
          Length = 459

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 171/460 (37%), Positives = 263/460 (57%), Gaps = 24/460 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDG 58
            E +TI A++T    S +SIIR+SG     +   I   K        R  S+RY F +D 
Sbjct: 2   KEFDTIAAIATNLGESGVSIIRVSGDKALSIVSSIFSGKNDRKLDDIRTYSMRYGFIIDK 61

Query: 59  ---RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
                LD+ ++     P SFT ED  E + HGG+ V   ILEE+ K    RLA+PGEF++
Sbjct: 62  DTKEKLDEVIVSYMKGPRSFTAEDVVEINCHGGVVVTKRILEEVVKA-GARLASPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLIS++TE+  + ++E   G+LS   G+  +KL  I + IEA 
Sbjct: 121 RAFLNGRIDLSQAEAVIDLISAKTELSAKSALEQSEGKLSREIGKIRNKLLEIIASIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D++  +S++    +  L ++I S ++    G+I+R G   VI+G  N GKSSL
Sbjct: 181 VDYPE-DDLEEVTSEKGRESVSKLVDEIDSLLAHADEGKILREGLNTVIVGKPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  +  AIVTD+PGTTRDV+   + +EG  +KI DTAGIR+TDD+VEK G++++  +
Sbjct: 240 LNALLMETRAIVTDVPGTTRDVIEEYMSIEGIPIKIVDTAGIRDTDDVVEKIGVEKSREK 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDH 341
           + ++DL +L+ + +       K+ I+F K+  +I +  K DL S   +E        Y  
Sbjct: 300 INSSDLTVLVLDNSRSLDNEDKEIINFIKDKKYIVLLNKVDLESKIDKEALKELNSKYII 359

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400
            IS+ TG GL++    IK +  +        + ++ RH   L +    LE +    +D  
Sbjct: 360 EISAKTGSGLDKFKEVIKELFFSGKVTSKDVMITNTRHKEALIRAKDSLEASKNALEDTF 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D+ + +LR A  SLG+I G    E ++D IFSKFC+GK
Sbjct: 420 AIDLASIDLRNAWKSLGEINGDTVEEDIIDKIFSKFCLGK 459


>gi|301169727|emb|CBW29328.1| GTPase [Haemophilus influenzae 10810]
          Length = 452

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  +               P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVQLLREHLKQAMGFQTG-MEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|225858807|ref|YP_002740317.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 70585]
 gi|225720545|gb|ACO16399.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 70585]
          Length = 457

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 147/458 (32%), Positives = 254/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDD VE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDTVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|118444248|ref|YP_876979.1| tRNA modification GTPase TrmE [Clostridium novyi NT]
 gi|166200476|sp|A0PX77|MNME_CLONN RecName: Full=tRNA modification GTPase mnmE
 gi|118134704|gb|ABK61748.1| tRNA modification GTPase TrmE [Clostridium novyi NT]
          Length = 459

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 168/460 (36%), Positives = 260/460 (56%), Gaps = 24/460 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDG 58
            E +TI A++T    S +SIIR+SG     +   I   K        R  S+RY F +D 
Sbjct: 2   KEFDTIAAIATNLGESGVSIIRVSGDKALSIVSSIFTGKNDRKLDDIRTYSMRYGFIIDK 61

Query: 59  ---RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
                LD+ ++     P SFT ED  E + HGG+ V   ILEE+      RLA+PGEF++
Sbjct: 62  DTKEKLDEVIVSYMKGPRSFTAEDVVEINCHGGVVVTKRILEEVV-AAGARLASPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI+++TE+  + ++E   G+LS   G+  +KL  I + IEA 
Sbjct: 121 RAFLNGRIDLSQAEAVIDLINAKTELSAKSALEQSEGKLSREIGKIRNKLLEIIASIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D++  +S++    +  L ++I S +     G+I+R G   VI+G  N GKSSL
Sbjct: 181 VDYPE-DDLEEVTSEKGRESVSKLLDEIDSLLDHADEGKILREGLNTVIVGKPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  +  AIVTD+PGTTRDV+   + ++G  +KI DTAGIR+TDD+VEK G++++  +
Sbjct: 240 LNALLMETRAIVTDVPGTTRDVIEEYMSIDGIPIKIIDTAGIRDTDDVVEKIGVEKSREK 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDH 341
           + N+DL +L+ + +       K+ I+F K+  +I +  K DL S   +E        Y  
Sbjct: 300 INNSDLTVLVLDNSRGLDDEDKEIINFIKDKKYIVLLNKMDLESKIDKEALKELNSKYII 359

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
            IS+ TG GL++    IK +  +        + ++ RH   L +    LE +    +   
Sbjct: 360 EISAKTGSGLDKFKEVIKELFFSGKVASKDVMITNTRHKEALIRAKESLEASKNALDNTF 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D+ + +LR A  SLG+I G    E ++D IFSKFC+GK
Sbjct: 420 AIDLASIDLRNAWKSLGEINGDTVEEDIIDKIFSKFCLGK 459


>gi|327462129|gb|EGF08456.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK1]
          Length = 457

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 251/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSEVESHTLNYGHIVDPQ 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      +L +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQELLNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+   +       ++ +   ++ + I +  K+DL      +        IS  
Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKIELDQLPTDAIKISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + +  L+      E    +D
Sbjct: 361 HNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|148988468|ref|ZP_01819915.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP6-BS73]
 gi|147926149|gb|EDK77223.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP6-BS73]
          Length = 457

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 254/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSQVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLIEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|149911784|ref|ZP_01900388.1| tRNA modification GTPase [Moritella sp. PE36]
 gi|149805130|gb|EDM65152.1| tRNA modification GTPase [Moritella sp. PE36]
          Length = 454

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 166/455 (36%), Positives = 244/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             ETI A +T      + IIR+SG     V + I   K P  RKA    F   D + +D+
Sbjct: 3   TNETIIAQATPPGRGGVGIIRISGAKTELVAQTIL-NKIPAVRKADYLSFLDEDQQTIDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ I+F +P SFTGED  E   HGG  +++ ++  + K+  +R+A PGEFS RAF N K+
Sbjct: 62  GIAILFKAPNSFTGEDVLELQGHGGPVIMDMLMRRILKIDGIRMARPGEFSERAFLNDKM 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +M  + GE S       + L H+R ++EA +DF E E+
Sbjct: 122 DLTQAEAIADLIDATSERAAKSAMNSLQGEFSKKINTLTESLIHLRIYVEAAIDFPE-EE 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   +  ++   +  + +++S+   + K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 181 VDFLADGKIAQALYNIMDNLSAVQKEAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGKE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI+R + E+ NAD +L
Sbjct: 241 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDRVEQIGIERAWQEINNADQVL 300

Query: 304 LLK-----EINSKKEI------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSF 346
            +      +     EI        P +I    I  K DL       S         IS+ 
Sbjct: 301 FMVDGTTTDATDPAEIWPDFIDRLPSSIGLTVIRNKVDLTGETLTVSDDQSHPVFKISAK 360

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
              GL+EL + +K  +  K         + +RHL  L +   +L++     E     +++
Sbjct: 361 ENLGLDELKDHLKQCMGYK-SNTEGGFIARRRHLDALEKADEHLQIGKQQLEVYKAGELL 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRLA   L +ITG    + LL  IF+ FCIGK
Sbjct: 420 AEELRLAQQQLSEITGEFSSDDLLGRIFTSFCIGK 454


>gi|262282851|ref|ZP_06060618.1| tRNA modification GTPase mnmE [Streptococcus sp. 2_1_36FAA]
 gi|262261103|gb|EEY79802.1| tRNA modification GTPase mnmE [Streptococcus sp. 2_1_36FAA]
          Length = 457

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 141/457 (30%), Positives = 252/457 (55%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKDLSKVESHTLNYGHIVDPQ 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ + +    R+A PGEF++R
Sbjct: 62  NQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLVIR-EGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+   +       K+ +   ++ + I +  K+DL      +        IS  
Sbjct: 301 QEADLVLLVLNASEPLTDQDKQLLEISQDSNRIVLLNKTDLEEKIELDQLPADAIKISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + +  L+      E    +D
Sbjct: 361 HNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|120556798|ref|YP_961149.1| tRNA modification GTPase TrmE [Marinobacter aquaeolei VT8]
 gi|166200483|sp|A1U7J3|MNME_MARAV RecName: Full=tRNA modification GTPase mnmE
 gi|120326647|gb|ABM20962.1| tRNA modification GTPase trmE [Marinobacter aquaeolei VT8]
          Length = 456

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 159/460 (34%), Positives = 246/460 (53%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI A++T    + + I+R+SGP    +   +   + P PR A    F    G +
Sbjct: 1   MQPATDTIAAIATAPGQAGVGIVRVSGPRAMAIARTMLGFE-PKPRYAHYGPFRDRQGEL 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + FP+P SFTGED  E   HGG  +++ +L E+  +   RLA PGEFS RAF N
Sbjct: 60  IDEGIGLYFPNPHSFTGEDVFELQGHGGTVILDILLREVCSL-GARLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI S +E   R ++  M G  S      ++ +TH+R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIESSSEQAARCAVRSMQGVFSKRVDNLVEAITHLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +  +V +D+  L   +   + + + G I+R+G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGKVASDLQGLLEQVQQILGEAQQGTILRDGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT I GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI R + E+  AD
Sbjct: 238 GREAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDEVEQIGIARAWEEIRQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL--------YSTYTEEYDH 341
            ILL+ +  +  +              P++     I  K DL          ++      
Sbjct: 298 RILLMVDATTTDKTEPHEIWPDFIDQLPRSAPVTVIRNKVDLSGEPLGISAESHQTAPVI 357

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            +++   EGLE L   +K  +            + +RHL  L +    L       +  G
Sbjct: 358 RLAAKAAEGLEVLREHLKECI-GFASTTEGGFLARRRHLDALERARDSLLQGQTQLEGYG 416

Query: 402 L-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE+LR A  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 417 AGELLAEDLRAAQDALGEITGHLTPDELLGKIFSSFCIGK 456


>gi|226315527|ref|YP_002775423.1| tRNA modification GTPase [Brevibacillus brevis NBRC 100599]
 gi|226098477|dbj|BAH46919.1| probable tRNA modification GTPase [Brevibacillus brevis NBRC
           100599]
          Length = 458

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 149/459 (32%), Positives = 241/459 (52%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           + +TI AV+T      I++IR+SG    +V + I K K+      S    +G       G
Sbjct: 2   KFDTIAAVATPMGEGGIAVIRVSGTEAIEVVDKIYKGKQRLSTVDSHTIHYGHLYEPNTG 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +++ L+ V  +P +FT ED  E + HGGI  V  +LE L      RLA PGEF++RAF
Sbjct: 62  ERVEEVLVSVMKAPRTFTREDVVEVNCHGGIVSVEKVLE-LILDNGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ DLI ++T+   ++++  + G+LS L  Q    L    + IE  LD+
Sbjct: 121 LNGRVDLSQAEAVIDLIRAKTDRAMKVALNQVEGKLSRLIRQLRQNLIEAMAHIEVTLDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  DV+ F+   +    L +K +I   +   + G+I+R G    I+G  N GKSSL N+
Sbjct: 181 PEH-DVEEFTQNFLRGKCLEVKGEIQRLLQTAQQGKILREGLSTAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTD+ GTTRDV+   +++ G  +++ DTAGIR+T+DIVEK G++++   ++ 
Sbjct: 240 LVQEEKAIVTDVAGTTRDVIEEYVNVRGVPLRLIDTAGIRDTEDIVEKIGVEKSRQLLQK 299

Query: 299 ADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           ADL+LL+   N              K    I I  K DL      E              
Sbjct: 300 ADLVLLVINYNEPLSADDYAIFEAAKGFHVIVIVNKFDLPQKVDLEEIKRHFPQQPLIMT 359

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S+    G++ L   I  I    + ++   +  S+ RH+  L Q  R ++ A    ++   
Sbjct: 360 SAREETGIDLLEQAIGEIFFSGRVQQDDLTYVSNARHIQLLRQAERAMDEALGGIDELMP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D+I  +++ +   LG++ G    E L+D IFS+FC+GK
Sbjct: 420 VDMIQIDIKKSWELLGEVIGESVGEDLIDQIFSQFCLGK 458


>gi|328946229|gb|EGG40373.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK1087]
          Length = 479

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 142/457 (31%), Positives = 252/457 (55%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 24  ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLNKVESHTLNYGHIVDPQ 83

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 84  NQEILDEVMLGAMHSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 142

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 143 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 202

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 203 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 262

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 263 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 322

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+   +       ++ +   ++ + I +  K+DL      +        IS  
Sbjct: 323 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKIELDLLPTDVIKISVL 382

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + +  L+      +    +D
Sbjct: 383 HNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLDMGMPVD 442

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 443 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 479


>gi|149003876|ref|ZP_01828699.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP14-BS69]
 gi|237650073|ref|ZP_04524325.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CCRI 1974]
 gi|237822158|ref|ZP_04598003.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147758106|gb|EDK65110.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP14-BS69]
 gi|301799983|emb|CBW32573.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae OXC141]
          Length = 457

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 254/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|148998838|ref|ZP_01826274.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP11-BS70]
 gi|168576255|ref|ZP_02722149.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae MLV-016]
 gi|307067807|ref|YP_003876773.1| putative GTPase [Streptococcus pneumoniae AP200]
 gi|147755265|gb|EDK62316.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP11-BS70]
 gi|183577997|gb|EDT98525.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae MLV-016]
 gi|306409344|gb|ADM84771.1| Predicted GTPase [Streptococcus pneumoniae AP200]
          Length = 457

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 254/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEEVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|322515697|ref|ZP_08068669.1| tRNA modification GTPase TrmE [Actinobacillus ureae ATCC 25976]
 gi|322118229|gb|EFX90524.1| tRNA modification GTPase TrmE [Actinobacillus ureae ATCC 25976]
          Length = 493

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 158/454 (34%), Positives = 251/454 (55%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           K+TI A +T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G
Sbjct: 43  KDTIVAQATPIGRGGVGILRISGPLAQEVAKEVLGKEL-KPRLANYLPFKDQDGTVLDQG 101

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+D
Sbjct: 102 IALFFKAPNSFTGEDVLELQGHGGQMILDILLKRILAVKGVRIARAGEFSEQAFLNDKLD 161

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++
Sbjct: 162 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEI 220

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   ++    + K G I+R G K+VI G  NAGKSSL NALA +D 
Sbjct: 221 DFLADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGRDA 280

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +LL
Sbjct: 281 AIVTNIAGTTRDVLCEHIHIDGMPLHIIDTAGLREASDEVERIGIQRAWDEIEQADHVLL 340

Query: 305 LKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYT--EEYD----HLISSFT 347
           + +   +   +F           P+NI    I  K DL S     +E D      +S+ T
Sbjct: 341 MIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSSEAEGLQELDGFTLIRLSAQT 400

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIA 406
             G++ L   +K  +  +         + +RHL  L     +LE   +        +++A
Sbjct: 401 KVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLA 459

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 460 EELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 493


>gi|324994536|gb|EGC26449.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK678]
          Length = 457

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 143/457 (31%), Positives = 252/457 (55%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+   +       ++ +   ++ + I +  K+DL      +        IS  
Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKIELDQLPTDAIKISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + +  L+      E    +D
Sbjct: 361 HNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|225856671|ref|YP_002738182.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae P1031]
 gi|225725175|gb|ACO21027.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae P1031]
          Length = 457

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 255/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|319775065|ref|YP_004137553.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3047]
 gi|317449656|emb|CBY85862.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3047]
          Length = 452

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 250/455 (54%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA  + 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGHEA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R   D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  +               P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVQLLREHLKQAMGFQTG-MEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|303255573|ref|ZP_07341624.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae BS455]
 gi|303260461|ref|ZP_07346429.1| tRNA modification GTPase [Streptococcus pneumoniae SP-BS293]
 gi|303262818|ref|ZP_07348755.1| tRNA modification GTPase [Streptococcus pneumoniae SP14-BS292]
 gi|303265288|ref|ZP_07351198.1| tRNA modification GTPase [Streptococcus pneumoniae BS397]
 gi|303266495|ref|ZP_07352382.1| tRNA modification GTPase [Streptococcus pneumoniae BS457]
 gi|303268386|ref|ZP_07354182.1| tRNA modification GTPase [Streptococcus pneumoniae BS458]
 gi|301801851|emb|CBW34569.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae INV200]
 gi|302597429|gb|EFL64524.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae BS455]
 gi|302636016|gb|EFL66514.1| tRNA modification GTPase [Streptococcus pneumoniae SP14-BS292]
 gi|302638373|gb|EFL68840.1| tRNA modification GTPase [Streptococcus pneumoniae SP-BS293]
 gi|302642107|gb|EFL72458.1| tRNA modification GTPase [Streptococcus pneumoniae BS458]
 gi|302643946|gb|EFL74206.1| tRNA modification GTPase [Streptococcus pneumoniae BS457]
 gi|302645153|gb|EFL75390.1| tRNA modification GTPase [Streptococcus pneumoniae BS397]
          Length = 457

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 255/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTESFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|229843939|ref|ZP_04464080.1| tRNA modification GTPase TrmE [Haemophilus influenzae 6P18H1]
 gi|229812933|gb|EEP48621.1| tRNA modification GTPase TrmE [Haemophilus influenzae 6P18H1]
          Length = 452

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 251/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S      +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  +               P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQAG-MEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|145630099|ref|ZP_01785881.1| tRNA modification GTPase [Haemophilus influenzae R3021]
 gi|144984380|gb|EDJ91803.1| tRNA modification GTPase [Haemophilus influenzae R3021]
          Length = 452

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 163/455 (35%), Positives = 252/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   D  ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADSTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S      +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNTLVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N + +  S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLENVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  + +             P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESVDLTKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQTG-IEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|329118565|ref|ZP_08247269.1| tRNA modification GTPase TrmE [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465300|gb|EGF11581.1| tRNA modification GTPase TrmE [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 454

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 246/458 (53%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TI AV+T      + +IR+SG     + + I   K P PR A    F+  + R 
Sbjct: 1   MSATPQTIAAVATAPGRGGVGVIRISGKHLLPLAQQISGGKTPQPRLALYTDFYDAEKRT 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GL++ F +P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 61  IDSGLMLYFAAPASFTGEDVIELQGHGGPVVMQMLLSRCLEL-GARLAEPGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + ++   R+++  + G  S      +D L  +R  +EA LDF E
Sbjct: 120 NKLDLAQAESVADLIDASSQSAARMAVRSLKGAFSQHIHALVDDLITLRMLVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+      +    +  L+  + + ++Q + G ++R G  +V++G  N GKSSL NALA
Sbjct: 180 -EDIDFLEEADARGKLENLQGRLKAVLAQAQQGAVLREGMNVVLVGAPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D+AIVTDI GTTRD +   + L+G  V I+DTAG+R+TDD VEK GI+R+   +  AD
Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHITDTAGLRDTDDTVEKIGIERSGKALAQAD 298

Query: 301 LILLLKEI-----NSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDHLI---------- 343
           + L+L +         ++I  + P N+  I +  K DL     E  D L           
Sbjct: 299 VALILIDPAEGLNQKTRDILAALPGNLKKIEVHNKIDLSGGTPEFSDVLCSESGADTLIR 358

Query: 344 -SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
            S+ TG GL+ L   +   +  +  +      + +RH   L      LE A+       +
Sbjct: 359 LSAKTGAGLDLLKRALLQQIGWQ-GESEGLFLARRRHTAALEAAQTELEHAARCGNHQ-I 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE+LRLA  +  +ITG    + LL +IFS+FCIGK
Sbjct: 417 ELLAEHLRLAQAACSEITGEFTADDLLGVIFSRFCIGK 454


>gi|24379659|ref|NP_721614.1| tRNA modification GTPase TrmE [Streptococcus mutans UA159]
 gi|290580346|ref|YP_003484738.1| putative thiophene and furan degradation protein [Streptococcus
           mutans NN2025]
 gi|32171828|sp|Q8DTT8|MNME_STRMU RecName: Full=tRNA modification GTPase mnmE
 gi|24377614|gb|AAN58920.1|AE014960_1 putative thiophene and furan degradation protein [Streptococcus
           mutans UA159]
 gi|254997245|dbj|BAH87846.1| putative thiophene and furan degradation protein [Streptococcus
           mutans NN2025]
          Length = 455

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 138/456 (30%), Positives = 252/456 (55%), Gaps = 18/456 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           + +E +TI A++T     AI I+R+SG     + + I K K       S    +G    +
Sbjct: 2   ITNEFDTITAIATPLGEGAIGIVRISGSKALAIIKKIFKGKN-LDDVPSHTINYGHIVEN 60

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G I+D+ ++ V  +P++FT ED  E + HGG+AV N IL+ L      R+A+PGEF++RA
Sbjct: 61  GAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQ-LVLRSGARMADPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ DLI ++T+    ++++ + G LS+L      ++ +  + +E ++D
Sbjct: 120 FLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLAQVEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  ++  +       +  +++ +   + G+I+R G    I+G  N GKSSL N
Sbjct: 180 YPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNVGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++R+   +E
Sbjct: 240 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVERSKKALE 299

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSFT 347
            ADL+LL+           +  +   +N + + +  K+DL          E    IS   
Sbjct: 300 EADLVLLVLNSAEKLTDQDRTLLEISQNSNRLILLNKTDLPEQIETDQLPEDCIKISVIK 359

Query: 348 GEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDI 404
            + ++ +  +I  +  +     +   +  S+ RH+  + + ++ L+  +   E    +D+
Sbjct: 360 NQNIDVIEERINKLFFDNAAIVEKDATYLSNARHISLIEKALKSLQAVNDGLELGMPVDL 419

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 LQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455


>gi|16272938|ref|NP_439164.1| tRNA modification GTPase TrmE [Haemophilus influenzae Rd KW20]
 gi|1574033|gb|AAC22664.1| thiophene and furan oxidation protein (thdF) [Haemophilus
           influenzae Rd KW20]
          Length = 461

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 11  KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 69

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 70  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 129

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF + E++
Sbjct: 130 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPD-EEI 188

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 189 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 248

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 249 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAIDEVERIGISRAWTEIEQADRIIL 308

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  +               P  +    +  K DL      E +        +S+ T
Sbjct: 309 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 368

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 369 HDGVQLLREHLKQAMGFQTG-MEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 426

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 427 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 461


>gi|324992824|gb|EGC24744.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK405]
 gi|327489811|gb|EGF21601.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK1058]
          Length = 457

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 143/457 (31%), Positives = 252/457 (55%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSEVESHTLNYGHIVDPQ 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+   +       ++ +   ++ + I +  K+DL      +        IS  
Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKIELDQLPTDAIKISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + +  L+      E    +D
Sbjct: 361 HNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|306829480|ref|ZP_07462670.1| tRNA modification GTPase TrmE [Streptococcus mitis ATCC 6249]
 gi|304428566|gb|EFM31656.1| tRNA modification GTPase TrmE [Streptococcus mitis ATCC 6249]
          Length = 457

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIVQKIFKGKD-LSKVASHTLNYGHIVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++    SP++FT ED  E + HGGIAV N IL+ + +    R+A PGEF++
Sbjct: 61  QTGEIMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLVIR-EGARMAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSRKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL          E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPEAIETSELPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+  +   E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|163751386|ref|ZP_02158611.1| tRNA modification GTPase [Shewanella benthica KT99]
 gi|161328689|gb|EDP99837.1| tRNA modification GTPase [Shewanella benthica KT99]
          Length = 453

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 159/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + IIR+SG    +V   +     P  R A    F   DG ++D+G+
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDQASEVAMAMLG-HIPKTRYADYCDFKTADGEVIDQGI 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + F  P+SFTGED  E   HGG  V++ +++ + +   +R+A PGEFS +AF N K+DL
Sbjct: 63  ALYFKGPKSFTGEDVLELQGHGGQIVLDMLIKRVMETKGIRIARPGEFSEQAFMNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   + ++  + GE S+     ++++T++R ++EA +DF + E+V 
Sbjct: 123 TQAEAIADLIDATSEQAAKSALNSLQGEFSAEVHALVEQVTNLRLYVEAAIDFPD-EEVD 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +   + S  +  K G IIR G K+VI G  NAGKSSL NALA K+ A
Sbjct: 182 FLSDGKISGSLNKIITKLDSVKASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKETA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT++ GTTRDVL   + L+G  + I DTAG+RET D VEK GI+R + E+E AD +L +
Sbjct: 242 IVTEVAGTTRDVLREHIHLDGMPLHIIDTAGLRETVDTVEKIGIERAWAEIETADQVLFM 301

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348
            +  +   +             P  +    +  K+DL       +E++ H    IS+ TG
Sbjct: 302 LDGTTTDAVDPHEIWPDFIDRLPNKLGITVVRNKADLTGESLALSEDHGHPVFPISAKTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407
            G+E L   +KS++  +   L     + +RHL  L     +L +     E     +++AE
Sbjct: 362 LGIEALKQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLMLGKEQLEVYLAGELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 421 ELRMTQLALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|327460276|gb|EGF06613.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK1057]
          Length = 457

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 251/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSDLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +    +  +  +S+ +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTVEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+   N       ++ +   K+ + I +  K+DL      +        IS  
Sbjct: 301 QEADLVLLVLNANEPLTDQDRQLLEISKDSNRIILLNKTDLEEKIELDQLPTDVIKISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + +  L+      E    +D
Sbjct: 361 HNQNIDKIEERINHLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEVGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|253573863|ref|ZP_04851205.1| tRNA modification GTPase TrmE [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846340|gb|EES74346.1| tRNA modification GTPase TrmE [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 459

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 156/458 (34%), Positives = 242/458 (52%), Gaps = 23/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGR 59
            +TI A+ST    S I++IR+SGP        + + K   P   S    +G       G 
Sbjct: 3   SDTIAAISTAVGESGIAVIRVSGPEAISEVGRLFRSKTALPEAESHTVHYGFIVDPATGE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            L++ L+ VF +P SFT ED  E   HGGI  V  +++ L +   +RLA PGEF++RAF 
Sbjct: 63  KLEEVLVSVFRAPRSFTTEDVVEISTHGGIISVKRVMDLLLQQRGIRLAEPGEFTKRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI S+++    ++++ + G+LS    +    L    + IE ++D+ 
Sbjct: 123 NGRIDLSQAEAVIDLIRSKSDRAFSVALKQVEGQLSRQISKLRHTLIETLAHIEVNIDYP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  DV++ +   +      +   I + +     G+I+R G    I+G  N GKSSL NAL
Sbjct: 183 EH-DVESMTMAFIKEKCAEVSEGIDALLKTANQGKILREGITTAIVGRPNVGKSSLMNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A+++ AIVTDIPGTTRDV+   + +    +K+ DTAGIRET D+VE+ G++R+   V  A
Sbjct: 242 ARENKAIVTDIPGTTRDVIEEYVTINNIPLKLLDTAGIRETMDVVEQIGVERSKAAVSEA 301

Query: 300 DLILLLK---EINSKKEISF---PKNIDFIFIGTKSDLYST---------YTEEYDHLIS 344
           DLILL+    E   + EI+     K    I +  K DL            + EE    +S
Sbjct: 302 DLILLVLNSAEALHEDEIALMEQLKGRSTIVLLNKIDLPQQLDREVVRRYFPEESIVELS 361

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
             T EGL+ L + I  +      +    +  S+ RH+  L +  + L  A    +    +
Sbjct: 362 VKTEEGLDHLEDAIARMFFGGELESNDLTYVSNVRHIALLKKAKQSLADAYEAADSGIPI 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           DI+  ++RLA   LG++ G    + L+D IFS+FC+GK
Sbjct: 422 DILQIDVRLAWEQLGEVIGDSAPDALIDQIFSQFCLGK 459


>gi|322387781|ref|ZP_08061390.1| thiophene and furan oxidation protein ThdF [Streptococcus infantis
           ATCC 700779]
 gi|321141648|gb|EFX37144.1| thiophene and furan oxidation protein ThdF [Streptococcus infantis
           ATCC 700779]
          Length = 457

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 255/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSELINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLKTARRGKILREGIATAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDVVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL          +    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPEAIETSELPDDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+  +   E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|253753982|ref|YP_003027123.1| tRNA modification GTPase TrmE [Streptococcus suis P1/7]
 gi|251820228|emb|CAR46651.1| tRNA modification GTPase TrmE [Streptococcus suis P1/7]
 gi|292558744|gb|ADE31745.1| tRNA modification GTPase TrmE [Streptococcus suis GZ1]
 gi|319758543|gb|ADV70485.1| tRNA modification GTPase TrmE [Streptococcus suis JS14]
          Length = 457

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 150/457 (32%), Positives = 249/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F +   + K K        SL Y   +D  
Sbjct: 2   ITKEFDTITAISTPLGEGAIGIVRLSGTDAFAIASTVFKGKDLATVPSHSLNYGHAIDPA 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G++LD+ ++    SP++FT ED  E + HGGIAV N IL+ L +    R+A PGEF++R
Sbjct: 62  TGQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     ++  + G LS L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ V    L  +  + + +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDDIVEK G++R+   +
Sbjct: 241 NNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSF 346
           E ADLILL+   +       +  ++     + I +  K+DL          E    IS  
Sbjct: 301 EEADLILLVLNASEPLTEQDRNLLAISDMANRIVLLNKTDLEEQIEVDQLPEDVIRISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLD 403
             + ++++  KI  +        +   +  S+ RH+  + Q V+ L   +   K    +D
Sbjct: 361 QNQNIDQIEEKINQLFFENAGLVEQDATYLSNSRHISLIEQAVQSLHAVNDGLKVGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457


>gi|309751333|gb|ADO81317.1| tRNA modification GTPase mnmE [Haemophilus influenzae R2866]
          Length = 461

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 249/455 (54%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 11  KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 69

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 70  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 129

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S      +D + ++R+++EA +DF + E++
Sbjct: 130 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPD-EEI 188

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA  + 
Sbjct: 189 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGHEA 248

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R   D VE+ GI R + E+E AD I+L
Sbjct: 249 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNATDEVERIGISRAWTEIEQADRIIL 308

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  +               P  +    +  K DL      E +        +S+ T
Sbjct: 309 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 368

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 369 HDGVQLLREHLKQAMGFQTG-MEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 426

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 427 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 461


>gi|329123024|ref|ZP_08251595.1| tRNA modification GTPase TrmE [Haemophilus aegyptius ATCC 11116]
 gi|327471955|gb|EGF17395.1| tRNA modification GTPase TrmE [Haemophilus aegyptius ATCC 11116]
          Length = 461

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 11  KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 69

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 70  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 129

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF + E++
Sbjct: 130 LAQAEAIADLIYATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPD-EEI 188

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 189 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 248

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 249 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAIDEVERIGISRAWTEIEQADRIIL 308

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  +               P  +    +  K DL      E +        +S+ T
Sbjct: 309 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAHT 368

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 369 HDGVQLLREHLKQAMGFQAG-MEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHEG-ELL 426

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 427 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 461


>gi|302390791|ref|YP_003826612.1| tRNA modification GTPase trmE [Thermosediminibacter oceani DSM
           16646]
 gi|302201419|gb|ADL08989.1| tRNA modification GTPase trmE [Thermosediminibacter oceani DSM
           16646]
          Length = 462

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 152/464 (32%), Positives = 247/464 (53%), Gaps = 26/464 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP------FPRKASLRYFF 54
           M+   +TI A+ST     +I I+R+SG   F++   I + KK        PR   L    
Sbjct: 1   MSMTGDTIAAISTPLGEGSIGIVRISGEDSFRIASEIFRPKKNIDPSEMKPRTMYLGSIV 60

Query: 55  GL-DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
               G ++D+ LL+ + +P ++T E+  E + HGG  V   ILE +      R+A PGEF
Sbjct: 61  DPGSGEVIDEVLLVKYKAPFTYTRENMVEINCHGGFTVQRRILE-VVLGRGARVAEPGEF 119

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG+IDL +AE++ D+I ++T+    +++  + G LS    +   ++  I + IE
Sbjct: 120 TKRAFLNGRIDLSQAEAVIDIIRAKTDRALNVAVNQLKGGLSERIREVRQRILRIIAHIE 179

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A++DF E +D+       +  DI  ++ ++   + + + G+I+R G   VILG  N GKS
Sbjct: 180 ANIDFPE-DDIPEADPDTIREDIRGIRVELEELLKKAQAGKIMREGLSTVILGRPNVGKS 238

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N+L ++  AIVTDIPGTTRD++   L++ G  VKI DTAGIRET D VEK G++R  
Sbjct: 239 SLLNSLLREKRAIVTDIPGTTRDIIEEYLNINGIPVKIVDTAGIRETCDAVEKIGVERAL 298

Query: 294 LEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL---------YSTYTEE 338
             ++ A+L+LL+ + +       +  +   K+   I +  K+DL          S +  +
Sbjct: 299 ESLKEAELVLLMLDASDELREEDRAIMELVKDKFVIVVLNKTDLPEKLSVDEVKSAFPGK 358

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMA-SLN 396
               +S+   +G+EEL   I   ++ +   +    I +  RH   +   V  LE A S  
Sbjct: 359 PLIRVSALREKGIEELKEAIYRAVTEEIGPVDEGVIVTRARHSQAVKNAVEALERAESAL 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                ++++A  +R A   LG+ITG    E +++ IF  FCIGK
Sbjct: 419 SSGIPMEMVAMEVREAWERLGEITGDTVREDVVNAIFENFCIGK 462


>gi|157694475|ref|YP_001488937.1| tRNA modification GTPase TrmE [Bacillus pumilus SAFR-032]
 gi|205829058|sp|A8FJG0|MNME_BACP2 RecName: Full=tRNA modification GTPase mnmE
 gi|157683233|gb|ABV64377.1| tRNA modification GTP-binding protein TrmE [Bacillus pumilus
           SAFR-032]
          Length = 459

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 158/459 (34%), Positives = 255/459 (55%), Gaps = 25/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58
           +TI A+ST     AI+IIRLSGP   Q+ + + K  K          ++ Y   +D    
Sbjct: 2   DTIAAISTPMGEGAIAIIRLSGPEAVQIADRMYKGPKEKKLVSVDSHTIHYGHIVDARTD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ V  +P++FT ED  E + HGGI  VN +L+ LA     RLA PGEF++RAF
Sbjct: 62  QVIEEVMVSVLRAPKTFTREDVIEINCHGGIVTVNKVLQ-LALREGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L  +   ++    + IE ++D+
Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAITQMEGRLSGLVQRLRGEILETLAHIEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     +K +I S +S    G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEYDDVEEMTHRVLVEKATSVKKEIESLLSTSHQGKILREGLSTVIIGRPNVGKSSLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 241 LVQETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300

Query: 299 ADLILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYSTY---------TEEYDHLI 343
           ADLILL+   +   S+++I        +D I I  K+DL              +      
Sbjct: 301 ADLILLVLNYSEELSEEDIKLFEAVSGMDIIVIVNKTDLEPKLDVEKVKQLAKDRPVVTT 360

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCG 401
           S    +G++EL   I+S+      +    +  S+ RH+  L    + +E A    E D  
Sbjct: 361 SLLQEKGIDELEMAIQSLFFTGSIESGDLTYVSNTRHIALLQAAKQSIEDALEGIEMDVP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI+  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 421 IDIVQIDLTRCWEQLGEIIGDAVHESLIDQLFSQFCLGK 459


>gi|269215192|ref|ZP_06159102.1| tRNA modification GTPase TrmE [Neisseria lactamica ATCC 23970]
 gi|269208082|gb|EEZ74537.1| tRNA modification GTPase TrmE [Neisseria lactamica ATCC 23970]
          Length = 536

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/453 (36%), Positives = 249/453 (54%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + E +C  K P PR A+   F   DG+ 
Sbjct: 89  MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCG-KTPKPRVATYADFTDADGQA 147

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 148 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 206

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 207 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 266

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 267 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 325

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 326 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 385

Query: 301 LILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +              + P  +  I I +KSDL++          E    +S+ T
Sbjct: 386 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 445

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +      +  +      +  RH+  L      L +A+L      ++++AE
Sbjct: 446 GDGLDALKRTLLREAGWQ-GESEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELLAE 503

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 504 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 536


>gi|324991080|gb|EGC23014.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK353]
          Length = 457

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 143/457 (31%), Positives = 251/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+   +       ++ +   ++ + I +  K+DL      +        IS  
Sbjct: 301 QEADLVLLVLNASESLTEQDRQLLEISQDSNRIVLLNKTDLEEKIELDQLPADAIKISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + +  L+      E    +D
Sbjct: 361 HNQNIDKIEERINQLFFENAGIVEQDATYLSNTRHISLIEKALESLQAVNQGLEMGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|145628055|ref|ZP_01783856.1| tRNA modification GTPase TrmE [Haemophilus influenzae 22.1-21]
 gi|144979830|gb|EDJ89489.1| tRNA modification GTPase TrmE [Haemophilus influenzae 22.1-21]
          Length = 452

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 251/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  VALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S      +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  +               P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQTG-IEGGFLARRRHLDALEKAAEHLQIGLVQLTEFYAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGSIFSSFCIGK 452


>gi|332360804|gb|EGJ38610.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK49]
          Length = 457

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 142/457 (31%), Positives = 250/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +       +  +S+ +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTKLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+   +       ++ +   ++ + I +  K+DL      +        IS  
Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKIELDQLPADAIKISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + +  L+      E    +D
Sbjct: 361 HNQNIDKIEERINQLFFENAGIFEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      L +ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDMTRTWEILSEITGDAAPDELITQLFSQFCLGK 457


>gi|238797848|ref|ZP_04641340.1| tRNA modification GTPase mnmE [Yersinia mollaretii ATCC 43969]
 gi|238718264|gb|EEQ10088.1| tRNA modification GTPase mnmE [Yersinia mollaretii ATCC 43969]
          Length = 454

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 158/453 (34%), Positives = 243/453 (53%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A +T      + I+R+SG +   V + +   K P PR A    F  +DG  LD+G+
Sbjct: 5   DTIVAQATPPGRGGVGILRVSGRAAAAVAQAVLG-KLPKPRYADYLPFKDVDGSTLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL
Sbjct: 64  ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPELRIARPGEFSERAFLNDKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + +E   R ++  + G  S    Q ++ LTH+R ++EA +DF + E++ 
Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPD-EEID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  ++   +  +  ++    ++ + G ++R G K+VI G  NAGKSSL NALA ++ A
Sbjct: 183 FLSDGKIEGQLNGVMAELEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L +
Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFM 302

Query: 306 KEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTG 348
            +  +                 P  +    +  K+D+       +         +S+ TG
Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPSTLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAE 407
           EG++ L N +K  +            + +RHL  L    ++L             +++AE
Sbjct: 363 EGIDLLRNHLKQSM-GFTSNTEGGFLARRRHLQALETAAQHLVQGHEQLVSAYAGELLAE 421

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 422 ELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|219871858|ref|YP_002476233.1| tRNA modification GTPase TrmE [Haemophilus parasuis SH0165]
 gi|219692062|gb|ACL33285.1| tRNA modification GTPase TrmE [Haemophilus parasuis SH0165]
          Length = 452

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 163/454 (35%), Positives = 248/454 (54%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + +   K P PR A    F   DG +LD+G
Sbjct: 2   KETITAQATPIGRGGIGILRVSGPLATEVAQAVLG-KCPKPRIADYLPFKDEDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L  + K+  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDLLLNRILKVKGVRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   +++   + K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEAKLNEIIAQLANVRQEAKQGTILREGMKVVIAGKPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VEK GIKR + E+E AD +LL
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIKRAWDEIEQADHVLL 299

Query: 305 LKEINSKKEISF-----------PKNIDFIFIGTKSDLYST------YTEEYDHLISSFT 347
           + + N  +  SF           PKNI    I  K DL                 +S+ T
Sbjct: 300 MIDSNESQADSFQQEWATFLAKLPKNIPVTVIRNKVDLTGEAESLVQADNFTVIRLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIA 406
             G++ L   +K  +  +         + +RHL  L     +LE   +        +++A
Sbjct: 360 KVGVDLLREHLKKSMGYQ-SSTEGGFIARRRHLVALETAAEHLERGHIQLTQFYAGELLA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 419 EELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|325689629|gb|EGD31633.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK115]
          Length = 457

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 251/458 (54%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKN-LSKVASHTLNYGHIVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +  ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++
Sbjct: 61  QNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+     +++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSDLINNTRREILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345
           ++ ADL+LL+   +       K+ +   ++ + I +  K+DL      +        IS 
Sbjct: 300 LQEADLVLLVLNASELLTDQDKQLLEISQDSNRIVLLNKTDLEEKIELDQLPADAIKISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + + ++  +I  +        +   +  S+ RH+  + + +  L+      E    +
Sbjct: 360 LHNQNINKIEERINQLFFKNAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|145632387|ref|ZP_01788122.1| tRNA modification GTPase [Haemophilus influenzae 3655]
 gi|144987294|gb|EDJ93824.1| tRNA modification GTPase [Haemophilus influenzae 3655]
          Length = 452

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAIDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  +               P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQTG-MEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|260580092|ref|ZP_05847922.1| tRNA modification GTPase TrmE [Haemophilus influenzae RdAW]
 gi|205371770|sp|P43730|MNME_HAEIN RecName: Full=tRNA modification GTPase mnmE
 gi|260093376|gb|EEW77309.1| tRNA modification GTPase TrmE [Haemophilus influenzae RdAW]
          Length = 452

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAIDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  +               P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVQLLREHLKQAMGFQTG-MEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|145640677|ref|ZP_01796260.1| tRNA modification GTPase [Haemophilus influenzae R3021]
 gi|145274603|gb|EDK14466.1| tRNA modification GTPase [Haemophilus influenzae 22.4-21]
          Length = 452

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S    + +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  +               P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVQLLREHLKQAMGFQTG-MEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGSIFSSFCIGK 452


>gi|168494446|ref|ZP_02718589.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC3059-06]
 gi|221231770|ref|YP_002510922.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ATCC
           700669]
 gi|225854518|ref|YP_002736030.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae JJA]
 gi|183575548|gb|EDT96076.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC3059-06]
 gi|220674230|emb|CAR68765.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ATCC
           700669]
 gi|225724002|gb|ACO19855.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae JJA]
 gi|332075364|gb|EGI85833.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41301]
          Length = 457

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 255/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIVQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 300 LKEADLVLLVLNASEQLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|322391875|ref|ZP_08065340.1| thiophene and furan oxidation protein ThdF [Streptococcus peroris
           ATCC 700780]
 gi|321145355|gb|EFX40751.1| thiophene and furan oxidation protein ThdF [Streptococcus peroris
           ATCC 700780]
          Length = 457

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 146/458 (31%), Positives = 255/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIIDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    L  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTLEFEQLLTNLLKTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N+L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNSLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL          +    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPEAIETAELPDDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+  +   E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|253755917|ref|YP_003029057.1| tRNA modification GTPase TrmE [Streptococcus suis BM407]
 gi|251818381|emb|CAZ56209.1| tRNA modification GTPase TrmE [Streptococcus suis BM407]
          Length = 457

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 150/457 (32%), Positives = 249/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F +   + K K        SL Y   +D  
Sbjct: 2   ITKEFDTITAISTPLGEGAIGIVRLSGTDAFAIASTVFKGKDLATVPSHSLNYGHVIDPA 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G++LD+ ++    SP++FT ED  E + HGGIAV N IL+ L +    R+A PGEF++R
Sbjct: 62  TGQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     ++  + G LS L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ V    L  +  + + +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDDIVEK G++R+   +
Sbjct: 241 NNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSF 346
           E ADLILL+   +       +  ++     + I +  K+DL          E    IS  
Sbjct: 301 EEADLILLVLNASEPLTEQDRNLLAISDMANRIVLLNKTDLEEQIEVDQLPEDVIRISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLD 403
             + ++++  KI  +        +   +  S+ RH+  + Q V+ L   +   K    +D
Sbjct: 361 QNQNIDQIEEKINQLFFENAGLVEQDATYLSNSRHISLIEQAVQSLHAVNDGLKVGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457


>gi|331266427|ref|YP_004326057.1| tRNA modification GTPase TrmE [Streptococcus oralis Uo5]
 gi|326683099|emb|CBZ00717.1| tRNA modification GTPase TrmE [Streptococcus oralis Uo5]
          Length = 457

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 146/458 (31%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V       +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTREFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY----TEEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL          E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLAAQDRQLLEISQDTNRIILLNKTDLPEAIETSEIPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+  +   E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|306825270|ref|ZP_07458612.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432706|gb|EFM35680.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 457

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 146/458 (31%), Positives = 255/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIIDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTAQRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIR+TDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGVERSRKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSELPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+  +   E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|168483087|ref|ZP_02708039.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1873-00]
 gi|172043445|gb|EDT51491.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1873-00]
          Length = 457

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 255/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMIGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|77406399|ref|ZP_00783459.1| tRNA modification GTPase TrmE [Streptococcus agalactiae H36B]
 gi|77174990|gb|EAO77799.1| tRNA modification GTPase TrmE [Streptococcus agalactiae H36B]
          Length = 458

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 141/457 (30%), Positives = 249/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
           +    +TI A+ST     AI I+R+SG    ++   I + K     +  +L Y   +D  
Sbjct: 3   ITKXXDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPD 62

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L V  +P++FT ED  E + HGGIAV N IL+ + +    R+A PGEF++R
Sbjct: 63  KNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILR-HGARMAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    ++++ + G L +L      ++ +  + +E ++
Sbjct: 122 AFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++  +       +  + + +   + G+I+R G    I+G  N GKSSL 
Sbjct: 182 DYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDDIVEK G++R+   +
Sbjct: 242 NNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKAL 301

Query: 297 ENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSF 346
           E ADL+LL+        +  +  +   K  + I +  K+DL          +    IS  
Sbjct: 302 EEADLVLLVLNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKIEVNELPKNVIPISVL 361

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
             E ++++  +I  I  +     +   +  S+ RH+  + + V  L+  +   E    +D
Sbjct: 362 ENENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLKAVNEGLELGMPVD 421

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 422 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 458


>gi|170729246|ref|YP_001763272.1| tRNA modification GTPase TrmE [Shewanella woodyi ATCC 51908]
 gi|205415805|sp|B1KQ64|MNME_SHEWM RecName: Full=tRNA modification GTPase mnmE
 gi|169814593|gb|ACA89177.1| tRNA modification GTPase TrmE [Shewanella woodyi ATCC 51908]
          Length = 453

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 159/455 (34%), Positives = 250/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P  R A    F   +  ++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRISGDKASDVAMAVLG-HLPKTRYADYCDFKDAENAVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+
Sbjct: 61  GIALYFQGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVDGVRIAKPGEFSEQAFMNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + ++  + GE S    + ++++T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALNSLQGEFSVQIHELVEQVTNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++   +  +   + S  +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIAGSLNRIITKLDSVQASAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+TDD VE  GI+R + E+E AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTDDTVEMIGIERAWAEIETADQVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSF 346
            + +  +   +             PKN+    +  K+D+     T T+++ H    IS+ 
Sbjct: 300 FMVDGTTTDAVDPREIWPDFIDRLPKNLGITVVRNKADITGEPLTVTQDHGHSVFKISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+E L   +KS++  +   L     + +RHL  L     +L +     E     +++
Sbjct: 360 TGLGVESLQQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLMIGKEQLEVYLAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMTQMALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|113460278|ref|YP_718336.1| tRNA modification GTPase TrmE [Haemophilus somnus 129PT]
 gi|122945114|sp|Q0I0Z2|MNME_HAES1 RecName: Full=tRNA modification GTPase mnmE
 gi|112822321|gb|ABI24410.1| tRNA modification GTPase trmE [Haemophilus somnus 129PT]
          Length = 452

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 157/453 (34%), Positives = 251/453 (55%), Gaps = 20/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A +T      + I+R+SGP   QV E +   K   PR A+   F   DG +LD+G
Sbjct: 3   RDTIVAQATPIGRGGVGILRVSGPLAQQVAEQVLG-KTLTPRMANYLPFKDSDGTVLDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 62  IALYFKAPNSFTGEDVLELQGHGGQIVMDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF + E++
Sbjct: 122 LAQAEAIADLIEASSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPD-EEI 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   ++   ++ K G I+R G K+VI G  NAGKSSL N LA ++ 
Sbjct: 181 DFLADGKIETHLREIIAKLAKVKNEAKQGAILREGMKVVIAGRPNAGKSSLLNTLAGREA 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+E AD ILL
Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVEKIGIRRAWDEIEQADRILL 300

Query: 305 LKE----------INSKKEISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTG 348
           + +          + S+     P +I    +  K+DL                 +S+ T 
Sbjct: 301 ILDSTENQVELDLVQSEFMAKLPPHIPLTIVRNKADLSGEAEVLDEQNGLAVISLSAKTQ 360

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAE 407
           +G++ L   +K  +  +         + +RHL  L Q   +L+   +   +    +++AE
Sbjct: 361 KGVDLLRQHLKQSMGYQVCT-EGGFLARRRHLEALEQADIHLQAGLIQLTEFYAGELVAE 419

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 420 ELRIAQHHLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|15900887|ref|NP_345491.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae TIGR4]
 gi|111658245|ref|ZP_01408937.1| hypothetical protein SpneT_02000559 [Streptococcus pneumoniae
           TIGR4]
 gi|21363022|sp|Q97R24|MNME_STRPN RecName: Full=tRNA modification GTPase mnmE
 gi|14972489|gb|AAK75131.1| thiophene and furan oxidation protein ThdF [Streptococcus
           pneumoniae TIGR4]
          Length = 457

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   +  + I +  K+DL  T       E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQETNRIILLNKTDLPETIETSELPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|262374714|ref|ZP_06067986.1| tRNA modification GTPase TrmE [Acinetobacter junii SH205]
 gi|262310370|gb|EEY91462.1| tRNA modification GTPase TrmE [Acinetobacter junii SH205]
          Length = 454

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 172/457 (37%), Positives = 260/457 (56%), Gaps = 23/457 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M H+  TI A++T      + +IRLSGP  + + E +  K  P  R A  R F+  DG +
Sbjct: 4   MQHQT-TIAAIATPLGRGGVGVIRLSGPKAYAIAEQLTAKGLPAARMAGFRQFYDADGTV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+++ FP+P SFTGED  E   HGG  + N +L  L  +     A  GEFS RAFEN
Sbjct: 63  MDEGIVLCFPNPHSFTGEDVVEIQGHGGPVIQNALLARLLDL-GAVAAKAGEFSMRAFEN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL H+R  +EA +DF E
Sbjct: 122 GKMDLVQAEAIADLIDASSQAAARSAVRSLQGAFSTKINSVLEKLIHLRLHVEAAIDFPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +  ++L  +  ++N + +     + G+++R G ++VI G  NAGKSSL NALA
Sbjct: 182 -EEIDFLADGKILALLDDVQNSVKAVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVE+EGI+R   E+E AD
Sbjct: 241 GHERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEREGIRRAIKEIEQAD 300

Query: 301 LILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISS 345
           L+LL+ ++N   +             +    + IG K DL     E  D+       +S+
Sbjct: 301 LLLLVYDLNQNDDPLLLAQEYFAEHLEPKRLLLIGNKCDLTGQAAELSDYQGFRHIRVSA 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403
               G++ LI+ I +     F+    +  +  RHL  + +T RYL  A   L   + G +
Sbjct: 361 KQDMGVQALIDAITA--HAGFQPEEDTFIARTRHLDAMKRTQRYLAEAREQLVVFNAG-E 417

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 418 LVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454


>gi|149019612|ref|ZP_01834931.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP23-BS72]
 gi|147930987|gb|EDK81967.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP23-BS72]
 gi|301794153|emb|CBW36563.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae INV104]
 gi|332202879|gb|EGJ16947.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47901]
          Length = 457

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 147/458 (32%), Positives = 254/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ A+L+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 300 LKEANLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLIEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|194398466|ref|YP_002037652.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae G54]
 gi|194358133|gb|ACF56581.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae G54]
          Length = 457

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 256/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG + F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTNSFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMIGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|146328997|ref|YP_001209837.1| tRNA modification GTPase TrmE [Dichelobacter nodosus VCS1703A]
 gi|166991106|sp|A5EY43|MNME_DICNV RecName: Full=tRNA modification GTPase mnmE
 gi|146232467|gb|ABQ13445.1| tRNA modification GTPase TrmE [Dichelobacter nodosus VCS1703A]
          Length = 450

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 165/450 (36%), Positives = 256/450 (56%), Gaps = 17/450 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            ETI A++T      + IIR+SG     +   I  KK   PR+A L +F+ L G  +D+G
Sbjct: 4   NETIAAIATPPGIGGVCIIRISGAQAHAIAVNITHKKNLVPRQAILSHFYDLSGEQIDQG 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ FP+P SFTGED  E   HGGIAV + +L         RLA+ GEF++RAF N K+D
Sbjct: 64  IVLYFPAPHSFTGEDVVELQGHGGIAVAHALLSATLDF-GARLAHAGEFTQRAFLNDKLD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + ++   R +   + G  S       D+L  +R ++EA LDFSE+E +
Sbjct: 123 LAQAEAVADLIHARSQDALRAANRSLQGVFSQKIDALADELLRLRVYVEASLDFSEDE-I 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                 ++   ++         ++Q + G+++ +G  +V+ G  NAGKSSL NAL  ++ 
Sbjct: 182 DFLGEGKIREKLVDSLQKTQQLLAQSQQGQLLNDGIHLVLAGKPNAGKSSLLNALLGEER 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT   GTTRD++  D  ++G  V +SDTAG+RE+ D+VE+EGI+R+F  V+ AD++LL
Sbjct: 242 AIVTPQAGTTRDIVREDWIIDGIPVHLSDTAGLRESQDLVEQEGIRRSFDAVKRADIVLL 301

Query: 305 LKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           L + +++   +                +  F+ +  K+DL    T      IS+ TG G+
Sbjct: 302 LADGSARDNDARAEFVSLQEELHQLAPHAQFLVVYNKADLVDEQTAGDGLWISAKTGAGI 361

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAENLR 410
           E L+ KI + L+ K +       + KRH++ L     +L+ A    +   + +++AE LR
Sbjct: 362 EILLKKIAT-LAGKNQHEETVFIARKRHIHALESVEAHLQRALQQLEQFFVAELVAEELR 420

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA ++LG ITG V  + LLD IFS FCIGK
Sbjct: 421 LAHLALGTITGTVSSDDLLDEIFSGFCIGK 450


>gi|149006299|ref|ZP_01830011.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP18-BS74]
 gi|307127434|ref|YP_003879465.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 670-6B]
 gi|147762076|gb|EDK69038.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP18-BS74]
 gi|306484496|gb|ADM91365.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 670-6B]
 gi|332075631|gb|EGI86099.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17545]
          Length = 457

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 147/458 (32%), Positives = 255/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIVQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ A+L+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 300 LKEANLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|288942813|ref|YP_003445053.1| tRNA modification GTPase TrmE [Allochromatium vinosum DSM 180]
 gi|288898185|gb|ADC64021.1| tRNA modification GTPase TrmE [Allochromatium vinosum DSM 180]
          Length = 447

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 171/451 (37%), Positives = 244/451 (54%), Gaps = 15/451 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    ETI A++T      + I+R+SGP    + E I  +  P PR+A+   F   DG  
Sbjct: 1   MTTTGETIAAIATPPGMGGVGIVRISGPRTRSIAEGILGR-VPEPRRAAFGTFREADGTF 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+GL + F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEFS RAF N
Sbjct: 60  IDEGLALYFQAPRSFTGEDVLELQGHGGPIVMDLLLRRCLEL-GARLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL++AE++ADLI S T +  RL+   + G  S      +++L  +R  +EA LDF +
Sbjct: 119 GKLDLVQAEAVADLIESSTALAVRLAGRSLQGVFSQRINTLVERLIQVRLHVEATLDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++       V  D+  +   +   ++    G+IIR G  +VI G  N GKSSL NAL 
Sbjct: 179 -EEIDLADEPTVAIDLAAILEAVDRLLADAHQGQIIREGLAVVIAGAPNVGKSSLLNALC 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTDIPGTTRD+L  D+ ++G  ++I DTAG+R T D VE+EG++R    +  AD
Sbjct: 238 GSDAAIVTDIPGTTRDLLKFDIQVDGLPIRIVDTAGLRHTHDPVEQEGVRRAQTALSEAD 297

Query: 301 LILLLKEINSKKEIS----FPKNIDFIFIGTKSDLYSTYT------EEYDHLISSFTGEG 350
           L+L +   N + + S    FP       I  K DL            E +  +S  +GEG
Sbjct: 298 LVLWVYAANGEPDESIRSTFPAGCPITRIRNKIDLPGEAAGLVERDGEVEIALSVASGEG 357

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENL 409
           L+ L   +KS           +  + +RHL  L +    L  A+ N E+  G +++AE L
Sbjct: 358 LDLLKAHLKSRA-GLSAHPEGAFIARRRHLDALERARGALRAAATNLERRLGAELVAEEL 416

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LA  +LG+ITG    + LL  IFS FCIGK
Sbjct: 417 HLAQRALGEITGEFTSDDLLGRIFSSFCIGK 447


>gi|145638177|ref|ZP_01793787.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittII]
 gi|145272506|gb|EDK12413.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittII]
          Length = 452

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 249/455 (54%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S      +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA  + 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGHEA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R   D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  +               P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVQLLREHLKQAMGFQTG-MEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG    + LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|148994246|ref|ZP_01823539.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP9-BS68]
 gi|168488838|ref|ZP_02713037.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP195]
 gi|147927387|gb|EDK78418.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP9-BS68]
 gi|183572349|gb|EDT92877.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP195]
 gi|332073349|gb|EGI83828.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17570]
          Length = 457

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 254/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + IE +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQIEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  ++  +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ A+L+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 300 LKEANLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLIEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|194016355|ref|ZP_03054969.1| tRNA modification GTPase TrmE [Bacillus pumilus ATCC 7061]
 gi|194011828|gb|EDW21396.1| tRNA modification GTPase TrmE [Bacillus pumilus ATCC 7061]
          Length = 459

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 157/459 (34%), Positives = 255/459 (55%), Gaps = 25/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58
           +TI A+ST     AI+IIRLSGP   Q+ + + K  K          ++ Y   +D    
Sbjct: 2   DTIAAISTPMGEGAIAIIRLSGPEAVQIADRMYKGPKEKKLVSVDSHTIHYGHIVDARTD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ V  +P++FT ED  E + HGGI  VN +L+ LA     RLA PGEF++RAF
Sbjct: 62  QVIEEVMVSVLRAPKTFTREDVIEINCHGGIVTVNKVLQ-LALREGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L  +   ++    + IE ++D+
Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAITQMEGRLSGLVQRLRGEILETLAHIEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  + + ++     +K +I S +S  + G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEYDDVEEMTHRVLVEKATSVKKEIESLLSTSQQGKILREGLSTVIIGRPNVGKSSLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 241 LVQETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300

Query: 299 ADLILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYSTY---------TEEYDHLI 343
           ADLILL+   +   S+++I        +D I I  K+DL              +      
Sbjct: 301 ADLILLVLNYSEELSEEDIKLFEAVSGMDIIVIVNKTDLEPKLDVEKVKQLAKDRPVVTT 360

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCG 401
           S    +G++EL   I+S+      +    +  S+ RH+  L    + +E A      D  
Sbjct: 361 SLLQEKGIDELEMAIQSLFFTGSIESGDLTYVSNTRHIALLQAAKQSIEDALEGIAMDVP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI+  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 421 IDIVQIDLTRCWEQLGEIIGDAVHESLIDQLFSQFCLGK 459


>gi|256823856|ref|YP_003147819.1| tRNA modification GTPase TrmE [Kangiella koreensis DSM 16069]
 gi|256797395|gb|ACV28051.1| tRNA modification GTPase TrmE [Kangiella koreensis DSM 16069]
          Length = 452

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/457 (36%), Positives = 255/457 (55%), Gaps = 22/457 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   ++TI A++T      + IIR+SG    ++ + I  K     R+A+   F    G  
Sbjct: 1   MTS-QDTIAAIATPPGRGGVGIIRVSGKDATKISQVILGKSIKV-REATYLPFLDHLGHT 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ I+F +P SFTGED  E   HGG  +++ +L+E+      R+A PGEFS RAF N
Sbjct: 59  IDQGIAILFKAPNSFTGEDVLELQGHGGPVILDMLLKEVVSA-GARIARPGEFSERAFLN 117

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI S +E   R +M  + GE S+   Q ++ L H+R ++EA +DF E
Sbjct: 118 DKLDLAQAEAIADLIESTSEQAARSAMRSLQGEFSNKVNQLVESLIHLRIYVEAAIDFPE 177

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  +V  D+  + + I     + + G I+R G  +VI G  NAGKSSL N LA
Sbjct: 178 -EEIDFLSDGKVQTDLYAIIDAIKQLKKEAQQGSILREGMTVVIAGKPNAGKSSLLNTLA 236

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            K+ AIVT+I GTTRDVL   + ++G  V I DTAG+RE+DD VEK GI+R + E++ AD
Sbjct: 237 GKESAIVTEIAGTTRDVLREHIHIDGLPVHIIDTAGLRESDDTVEKIGIERAWQEIDKAD 296

Query: 301 LILLLKEINS-------KKEISFPK----NIDFIFIGTKSDLYSTY-----TEEYDHLIS 344
            I+L+ + +        + + +F K        + +  K DL         TE     +S
Sbjct: 297 QIVLVADASETHQFVPHEIDPAFTKFEQFKDKLLIVANKVDLTDQLELPDATEYKVLPLS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
           + TG+G+EEL N +K I+  K +    S  + +RHL  + + + Y E      E     +
Sbjct: 357 AKTGQGIEELKNTLKDIVGFK-QTSEGSFIARRRHLDAIERALLYCENGRQQLEVYHAGE 415

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++A+ LR A  +L +ITG    + LL  IFS FCIGK
Sbjct: 416 LLADELRQAQNALSEITGEFTADDLLGRIFSSFCIGK 452


>gi|323351499|ref|ZP_08087153.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           VMC66]
 gi|322121985|gb|EFX93711.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           VMC66]
          Length = 457

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 143/457 (31%), Positives = 251/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+   +       ++ +   +  + I +  K+DL      +        IS  
Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISQVSNRIVLLNKTDLEEKIELDQLPTDVIKISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + +  L+      E    +D
Sbjct: 361 HNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|49474829|ref|YP_032871.1| tRNA modification GTPase TrmE [Bartonella quintana str. Toulouse]
 gi|81827572|sp|Q6FYB8|MNME_BARQU RecName: Full=tRNA modification GTPase mnmE
 gi|49240333|emb|CAF26815.1| Thiophene and furan oxidizer [Bartonella quintana str. Toulouse]
          Length = 436

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 202/437 (46%), Positives = 281/437 (64%), Gaps = 4/437 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFAVS+G LPS +++IRLSGP    + + +C    P  R          DG  LD  L
Sbjct: 2   DTIFAVSSGLLPSGVAVIRLSGPHVINIVKALCG-HLPKARLMHYGNLTARDGSFLDSAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HG  AVVN  L+EL+     R A  GEFSRRAF  GK+DL
Sbjct: 61  TVFFPAPHSFTGEDCAEFHLHGSKAVVNRFLDELSTFDGCRSAEAGEFSRRAFMEGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AESLADLI +ETE QRRL++ G SG L++LY  W ++L   R+FIEA+LDFS+E DV 
Sbjct: 121 IQAESLADLIEAETESQRRLAVMGTSGRLTTLYRDWRNRLIKARAFIEAELDFSDEADVS 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +  S +V  D+  L   I  HI+QG+   I+R+G KIVI G  N+GKSS+ N LA K VA
Sbjct: 181 DLISDKVWEDVEELCISIRDHIAQGERANILRDGLKIVIAGAPNSGKSSIMNRLAGKSVA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV +  GTTRD L I L L G  V ++DTAG+RET++ +E+ GI+     + +ADL++L+
Sbjct: 241 IVMEEAGTTRDALEIRLVLGGLPVFLTDTAGLRETENKIEQLGIEIAKQHIVDADLVILV 300

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEE-YDHLISSFTGEGLEELINKIKSILS 363
            ++ + KE++ P+ + +   +G K DLY    ++ +    S+ TG   +  I +++S   
Sbjct: 301 YDMGNPKEVNLPETSAEIWHVGNKLDLYEEENKKTWTIQFSALTGLNFDYFIKELESFCL 360

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            +  ++    P+ KR L  L + +R +E AS+N +   L + AE+LR ASV LGKITG +
Sbjct: 361 RRVSEIGNLFPARKRQLQLLKEAIREIE-ASINYRSLDLSLHAEHLRCASVFLGKITGDI 419

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LLDIIFS+FCIGK
Sbjct: 420 DVEDLLDIIFSEFCIGK 436


>gi|300362683|ref|ZP_07058859.1| tRNA modification GTPase TrmE [Lactobacillus gasseri JV-V03]
 gi|300353674|gb|EFJ69546.1| tRNA modification GTPase TrmE [Lactobacillus gasseri JV-V03]
          Length = 461

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 142/459 (30%), Positives = 242/459 (52%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            + +TI A+ST      ISI+RLSG     +   + K      +  +    +G       
Sbjct: 6   TQFDTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGAD-LTKVPTHTIHYGHIVDPKT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ ++ V  +P++FT ED  E + HGG+ V N IL+ L      R+A+PGEF++RA
Sbjct: 65  QEVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R+++M  ++G L         +L    +  E ++D
Sbjct: 124 FMNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLEKIKTMRQELLDTMAHEEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D+ + +S+E+      +   I   +   + G+IIRNG    I+G  N GKSSL N
Sbjct: 184 YPEY-DMDDLTSQEMKKKAQEVLKQIEQLLQTAQEGKIIRNGLATAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTDI GTTRD L   + ++G  +K+ DTAGI  T+D VEK G++R+   ++
Sbjct: 243 YLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVERSKKAIK 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLI 343
            ADL+LL+ + +       K+ +    N   I I  K DL +  ++E           + 
Sbjct: 303 EADLVLLILDASQDLTAEDKRLLDLTANKKRIIILNKQDLGTKISQEMIKNLTDNPIIVT 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CG 401
           S    + ++ L N I+ +  +  +      + +++R    L++  + LE       D   
Sbjct: 363 SILKQKNMDALENAIEKLFFSGIENSQNQILVTNQRQAGLLAKAKQSLEDVISGINDAMP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD++  +L+ A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 423 LDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|254478023|ref|ZP_05091407.1| tRNA modification GTPase TrmE [Carboxydibrachium pacificum DSM
           12653]
 gi|214036027|gb|EEB76717.1| tRNA modification GTPase TrmE [Carboxydibrachium pacificum DSM
           12653]
          Length = 460

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 153/461 (33%), Positives = 246/461 (53%), Gaps = 26/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD-- 57
           E +TI A+ST    + I I+R+SG     +   I +  K       +  +L Y   +D  
Sbjct: 2   EFDTIAAISTSPGEAGIGIVRISGDRALDIISRIFRPYKKKDVKNVKTHTLHYGHIVDPD 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++R
Sbjct: 62  TGEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLK-QGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ D+I+++T +  + + + +SG L     +  D++  + + + A +
Sbjct: 121 AFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGYLGQKMRKLKDRMMELLAHLLALI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF E +DV      ++L     +  +I   I+  + G IIR G K  I+G  N GKSSL 
Sbjct: 181 DFPE-DDVDELERWQMLESAKEILKEIEKLIASAESGRIIREGLKTAIIGKPNVGKSSLL 239

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL K++ AIVTDIPGTTRD++   L+++G  +++ DTAGIR+TD++VEK G++R+   +
Sbjct: 240 NALLKENRAIVTDIPGTTRDIIEEYLNVKGIPIRLIDTAGIRDTDELVEKIGVERSKEVL 299

Query: 297 ENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE---------YDH 341
             ADL+L + + + +      +        + IF+  K DL     EE            
Sbjct: 300 GEADLVLFVIDASRELSKEDYEIFDILTGKNIIFVLNKIDLPKKIDEEELRNLTKDGIIV 359

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLE-MASLNEKD 399
            +S+    GLE+L   I +++      +    I ++ RH   L    +Y+E +    EK 
Sbjct: 360 EVSTVKKIGLEKLEETIYNLVFKGNVTIGNEEIITNTRHKEALINAKKYMESVVEAIEKG 419

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D+I  +L  A   +GKITG    E ++D IF +FC+GK
Sbjct: 420 YSEDLITIDLNSALNEIGKITGETATEDVIDQIFERFCVGK 460


>gi|304413431|ref|ZP_07394904.1| putative GTPase [Candidatus Regiella insecticola LSR1]
 gi|304284274|gb|EFL92667.1| putative GTPase [Candidatus Regiella insecticola LSR1]
          Length = 457

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 162/457 (35%), Positives = 245/457 (53%), Gaps = 21/457 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRI 60
           N E +TI A +T      + I+R+SG     V + I   K P PR A    F+  D   I
Sbjct: 4   NKENDTIVAQATPPGRGGVGILRISGALASAVAQAIL-NKLPPPRYAHYLKFYDEDSNSI 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP--NLRLANPGEFSRRAF 118
           LD+G+ + F  P SFTGED  E   HGG  V++ +L+ +  +P   LR+A PGEF  RAF
Sbjct: 63  LDQGIALYFQGPHSFTGEDILELQGHGGPIVLDLLLKRILALPLPGLRIARPGEFLERAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            N KIDL +AE++ADLI++ +E   R ++  + G  S     +   L  +R+++EA +DF
Sbjct: 123 LNNKIDLTQAEAVADLINANSEQAARSAVNSLQGVFSDRIKAFSQNLIDLRAYVEAAMDF 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           SE E++   S  ++   +  + N++    +    G ++R G K+VI G  NAGKSSL NA
Sbjct: 183 SE-EEINFLSDGKIEGQLNNIINELKKVQAAAHQGSLLREGMKVVIAGRPNAGKSSLLNA 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA K+ AIVT + GTTRDVL   + ++G  + I DTAG+RET +I+EK GI+R + E+EN
Sbjct: 242 LAGKESAIVTAVAGTTRDVLREYIHIDGMPLHIIDTAGLRETSEIIEKIGIERAWHEIEN 301

Query: 299 ADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS------TYTEEYDHLIS 344
           AD +L + + +S +            P  +  I +  K D+                 +S
Sbjct: 302 ADSLLFIVDSSSTEATLPDPELIARLPTTLPIIVVRNKIDMTDEQCGLTEVKGYPVIRLS 361

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLD 403
           + TG+G+E L   +K  +    +       + +RHL  L + +++L             +
Sbjct: 362 AKTGQGIENLQQYLKKSM-GFTQHPEGHFLARRRHLDALEKALKHLNNGHEQLVIMQAGE 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 421 LLAEELRLAQSALEEITGEFSSDDLLGEIFSNFCIGK 457


>gi|229846059|ref|ZP_04466171.1| tRNA modification GTPase TrmE [Haemophilus influenzae 7P49H1]
 gi|229811063|gb|EEP46780.1| tRNA modification GTPase TrmE [Haemophilus influenzae 7P49H1]
          Length = 452

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 251/455 (55%), Gaps = 23/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S      +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+L
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + + +  + +             P  +    +  K DL      E +        +S+ T
Sbjct: 300 MLDSSDPESVDLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEEGGYQIISLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405
            +G++ L   +K  +  +   +     + +RHL  L +   +L+  +  L E   G +++
Sbjct: 360 HDGVKLLREHLKQAMGFQTG-IEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRL    L +ITG      LL  IFS FCIGK
Sbjct: 418 AEELRLVQSYLSEITGQFTSNDLLGNIFSSFCIGK 452


>gi|322376714|ref|ZP_08051207.1| tRNA modification GTPase TrmE [Streptococcus sp. M334]
 gi|321282521|gb|EFX59528.1| tRNA modification GTPase TrmE [Streptococcus sp. M334]
          Length = 457

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 146/458 (31%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTESFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   +  + I +  K+DL          E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQETNRIILLNKTDLPEAIETEELPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+  +   E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|323487692|ref|ZP_08092950.1| tRNA modification GTPase trmE [Planococcus donghaensis MPA1U2]
 gi|323398426|gb|EGA91214.1| tRNA modification GTPase trmE [Planococcus donghaensis MPA1U2]
          Length = 461

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 150/461 (32%), Positives = 254/461 (55%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL----- 56
           E +TI A+ST +   AI+I+RLSGP    + + + +    K    +A+    +G      
Sbjct: 2   EFDTIAAISTPSGEGAIAIVRLSGPEAVAIADKLFRAPSNKALASQATHTIHYGHLEDPA 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G I ++ ++ +  +P++FT ED  E + HGGI  VN +LE L      RLA PGEF++R
Sbjct: 62  TGEIAEEVMVSLMKAPKTFTREDVIEINCHGGIVSVNRVLE-LVLRAGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G+LS L G     L    + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMDVALNQMEGKLSKLIGTLRQALLESIAQMEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +   +L    +++++I   +     G+I+R G   VILG  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTRPIMLEKSKWVRSEIEKLLQTSSQGKILREGLSTVILGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +++ AIVT+I GTTRD++   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NSLVQENKAIVTEIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRKVL 300

Query: 297 ENADLILLLK----EINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDHL-------- 342
           + ADLIL +      +  + E+ F   K++D+I +  K+DL      E            
Sbjct: 301 KEADLILYVLNYAEALTPEDELLFETVKDMDYIVVINKTDLPQKIDLEQVQKLAGDKLLV 360

Query: 343 -ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S    EG+++L   I ++    + +    +  S+ RH+  L Q  + +  A    E +
Sbjct: 361 TTSLVEEEGIDQLEEAIAALFFKGEIEAGDMTYVSNVRHIALLHQAHKTISDAIEAAEME 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D+I  ++      LG+I G    + LL+ +FS+FC+GK
Sbjct: 421 VPVDMIQIDVTRTWELLGEIIGDTADDGLLNQLFSQFCLGK 461


>gi|307704774|ref|ZP_07641670.1| tRNA modification GTPase TrmE [Streptococcus mitis SK597]
 gi|307621683|gb|EFO00724.1| tRNA modification GTPase TrmE [Streptococcus mitis SK597]
          Length = 457

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 256/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTESFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMMGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T       E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTSQDRQLLEISQDTNRIILLNKTDLPETIETSELPEDIIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+  +   E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|15896965|ref|NP_350314.1| tRNA modification GTPase TrmE [Clostridium acetobutylicum ATCC 824]
 gi|21363021|sp|Q97CW2|MNME_CLOAB RecName: Full=tRNA modification GTPase mnmE
 gi|15026841|gb|AAK81654.1|AE007868_10 Predicted GTPase, ThdF family [Clostridium acetobutylicum ATCC 824]
 gi|325511142|gb|ADZ22778.1| tRNA modification GTPase TrmE [Clostridium acetobutylicum EA 2018]
          Length = 459

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 151/460 (32%), Positives = 253/460 (55%), Gaps = 24/460 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFFGL---- 56
            E +TI A+ST    S ISIIR+SG     + + + K K         +    +G     
Sbjct: 2   KEFDTIAAISTAIGNSGISIIRVSGKEALSIVDKVFKGKSKKGIIEMNTYTMRYGNIVEL 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +G I+D+ ++     P+SFTGE+  E + HGG+     +LEE+ +    RLA PGEF++
Sbjct: 62  SNGDIIDEVIVSFMKGPKSFTGENVVEVNCHGGMYPTKRVLEEIIRA-GARLAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I+S+TE+  + ++    G +S    +   ++  I + IEA 
Sbjct: 121 RAFLNGRLDLSQAEAVMDIINSKTELSMKSAVAQSEGVISREINKLRQRILEIIAHIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D++  +++ V  D+  +  +I   I     G+I+R G   VI+G  N GKSSL
Sbjct: 181 VDYPE-DDLEEVTAENVSKDLNDILKEIDELILSADEGKILREGLNTVIIGKPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  +  AIVTDIPGTTRDV+   +++ G  +KI DTAGIRET+D++EK G++R+  +
Sbjct: 240 LNLLLDEKRAIVTDIPGTTRDVIEEYINISGIPIKIVDTAGIRETEDVIEKMGVERSKEK 299

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLY--------STYTEEYDH 341
           +ENADLI+ + + + K      + I + K+  +I +  K DL             ++   
Sbjct: 300 MENADLIIFMIDSSKKIDAEDLEIIDYIKDKKYIVLLNKVDLKNREDKSKLDLLNKDNII 359

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400
             S     GLE+L + I+++ +    +   ++ ++ RH   L +   +   +    +D  
Sbjct: 360 EFSVKEKVGLEKLKDTIENMFATGNLQHSNTMITNTRHKEALLRAREHCTTSLKALQDTL 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D+ + ++R A  +LG+ITG    E L+D IF  FC+GK
Sbjct: 420 AIDLASIDIRNAWTALGEITGETLQEDLIDKIFKDFCLGK 459


>gi|114565212|ref|YP_752726.1| tRNA modification GTPase TrmE [Shewanella frigidimarina NCIMB 400]
 gi|122298225|sp|Q07VS7|MNME_SHEFN RecName: Full=tRNA modification GTPase mnmE
 gi|114336505|gb|ABI73887.1| tRNA modification GTPase trmE [Shewanella frigidimarina NCIMB 400]
          Length = 453

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 156/455 (34%), Positives = 252/455 (55%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   I     P  R A    F   DG+++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRISGDLATNVATAIIG-HVPKTRYAEYCDFNNADGQVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+
Sbjct: 61  GIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEIDGIRIARPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S    + +D++T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++ N +  + + + +  +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIANALYKIISKLDTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+ +AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTLDTVEQIGIERAWAEIASADRVL 299

Query: 304 LLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSF 346
            + +  +   +             P  +    +  K+DL     ++ +      + IS+ 
Sbjct: 300 FMVDGTTTDAVNPHEIWPDFIDRLPAKLGVTVVRNKADLTGETLDKTEEQGSCVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G++EL   +KS++  +   L     + +RHL  L     +L++     E     +++
Sbjct: 360 TGLGIDELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAANHLQLGKEQLEVYLAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+  ++L +ITG    + LL  IF  FCIGK
Sbjct: 419 AEELRMTQMALSEITGKFTSDDLLGKIFGSFCIGK 453


>gi|319407872|emb|CBI81525.1| tRNA modification GTPase [Bartonella sp. 1-1C]
          Length = 435

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 190/436 (43%), Positives = 268/436 (61%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFAVS+G LPS ++I+RLSGP    + + +C    P  R          DG  LD  L
Sbjct: 2   DTIFAVSSGLLPSGVAIVRLSGPRVKYIVKTLCG-CLPKARLMHYGNLTARDGSFLDSAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HG  AVVN  L+EL      RLA  GEFSRRAF  GK+DL
Sbjct: 61  TVFFPAPHSFTGEDCAEFHLHGSRAVVNRFLDELTTFEECRLAEAGEFSRRAFIEGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AESLADLI +ETE QRRL++ G SG L+ LY  W   L   R+ IEA+LDFS+E D+ 
Sbjct: 121 IQAESLADLIQAETESQRRLAVMGTSGTLTKLYRDWRHILITARALIEAELDFSDENDIP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           N  S +V  DI  L + +  HIS G+   I+R+G KIVI+G  N+GKSS+ N L+ + VA
Sbjct: 181 NSVSDKVWKDIKKLYHSLCEHISAGERASILRDGIKIVIVGAPNSGKSSILNRLSGRSVA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++  GTTRD L + L L G LV  +DTAG+R+T++ +E  GI++    +  ADL++ +
Sbjct: 241 IVSEEEGTTRDALEVRLVLSGLLVLFTDTAGLRKTENTIELLGIEKAKQHIVEADLVIFV 300

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            ++N+ +EI+ PK + +   +G K DL       +    S+ +G   +  I +I+     
Sbjct: 301 YDMNNPQEINLPKTSAEIWHVGNKLDLCEGSKARWPIQFSTLSGLNFDYFIKEIELFCLR 360

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +  ++  +IP+ KR L  L +    +    +N     L + AE+LR AS  LG+I G +D
Sbjct: 361 RATEIGDAIPARKRQLQLLKEAAEEI-NVFMNSTSLDLSLCAEHLRRASHILGRIVGDID 419

Query: 425 VEQLLDIIFSKFCIGK 440
           VE LLD+IFS+FC+GK
Sbjct: 420 VEDLLDVIFSEFCVGK 435


>gi|319409465|emb|CBI83114.1| tRNA modification GTPase [Bartonella schoenbuchensis R1]
          Length = 435

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 187/436 (42%), Positives = 276/436 (63%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G LPS ++++RLSGP    + + +C    P  R          DG  LD  L
Sbjct: 2   DTIFALSSGLLPSGVAVVRLSGPHVVNIVKTLCG-CLPKARFMHYGNLIARDGSFLDSAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED AEFH+HGG AVVN  L+EL+  P  R+A  GEFSRRAF  GKIDL
Sbjct: 61  TVFFPGPHSFTGEDCAEFHLHGGKAVVNRFLDELSAFPECRIAEAGEFSRRAFTEGKIDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE+LADLI +ETE QRRL++ G SG L+ LY  W ++L   R+ IEA++DFS+E+D+ 
Sbjct: 121 IQAEALADLIEAETEGQRRLAVIGTSGHLTKLYRGWRNELITARALIEAEIDFSDEDDIP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +  S E+  ++  L   +  HI+ G+   I+ +G ++VI+G  N+GKSS+ N LA + VA
Sbjct: 181 DSISDEIWENMKKLSCSLCEHIAAGERANILTDGLRVVIVGAPNSGKSSIINRLAGRPVA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+  GTTRD L I L L G  V  +DTAG R+T+  +E+ GI+     + +ADL++L+
Sbjct: 241 IVTEEAGTTRDALEIRLILGGLPVFFTDTAGFRKTESKIEQLGIETAKQHIIDADLVILV 300

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            ++N+ +EI  PK + +   +G K DLY      +    S+ +G   +  I +I+S    
Sbjct: 301 DDMNNPQEIHLPKTSAEIWRVGNKLDLYKGDKTPWSIQFSALSGLNFDHFIKEIESFCLR 360

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +  ++   + + KR L  L + V+ ++ AS+N     L + AE+LR AS +LG+ITG ++
Sbjct: 361 RVAEIGNVVSAQKRQLQLLKEAVKEID-ASINHISLDLSLRAEHLRRASDALGRITGDIN 419

Query: 425 VEQLLDIIFSKFCIGK 440
           VE LLD+IFS+FC+GK
Sbjct: 420 VEDLLDVIFSQFCVGK 435


>gi|157373142|ref|YP_001471742.1| tRNA modification GTPase TrmE [Shewanella sediminis HAW-EB3]
 gi|189036210|sp|A8FP41|MNME_SHESH RecName: Full=tRNA modification GTPase mnmE
 gi|157315516|gb|ABV34614.1| tRNA modification GTPase TrmE [Shewanella sediminis HAW-EB3]
          Length = 453

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/455 (34%), Positives = 253/455 (55%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG    +V   +     P  R A    F   +G ++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRISGDQASEVAMALLG-HIPKTRYADYCDFKDGEGEVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  +R+A PGEFS +AF N K+
Sbjct: 61  GIALYFQGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVEGIRIAKPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + ++  + GE S+   + +D++T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALNSLQGEFSTQVHELVDRVTNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++   +  +   + S  +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIAGSLYRIITKLDSVQASAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VE+ GI+R + E+E AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTADTVEQIGIERAWAEIETADQVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDHL---ISSF 346
            + +  +   +             P+ +    +  K+D+     T T+++ H    IS+ 
Sbjct: 300 FMVDGTTTDAVDPHEIWPDFIDRLPEKLGITVVRNKADITGEALTVTQDHGHNVFRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+EEL   +KS++  +   L     + +RHL  L     +L +     E     +++
Sbjct: 360 TGLGVEELQQHLKSLMGYQ-SNLEGGFIARRRHLEALELATSHLMIGKEQLEVYQAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMTQMALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|332360300|gb|EGJ38113.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
           SK355]
          Length = 457

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 143/457 (31%), Positives = 253/457 (55%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSEVESHTLNYGHIVDPQ 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ +L    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+     +++ + G LS+L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +S+ ++  + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSF 346
           + ADL+LL+   +       ++ +   ++ + I +  K+DL      +        IS  
Sbjct: 301 QEADLVLLVLNASEQLTDQDRQLLEISQDSNRIVLLNKTDLEEKIELDQLPTDVIKISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
             + ++++  +I  ++       +   +  S+ RH+  + + +  L+      E    +D
Sbjct: 361 HNQNIDKIEERINHLIFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|261346747|ref|ZP_05974391.1| tRNA modification GTPase TrmE [Providencia rustigianii DSM 4541]
 gi|282565147|gb|EFB70682.1| tRNA modification GTPase TrmE [Providencia rustigianii DSM 4541]
          Length = 454

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/454 (36%), Positives = 246/454 (54%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A +T      + I+R+SGP    V E +   K P PR A    F  +DG +LD+G
Sbjct: 4   NDTIVAQATPPGRGGVGILRVSGPKAALVAETVLG-KLPKPRYAEYLPFRDVDGSVLDQG 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + I FP P SFTGED  E   HGG  +++ +L  +  +  +R+ANPGEFS RAF N K+D
Sbjct: 63  IAIYFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTIGAIRIANPGEFSERAFLNDKLD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +M  + G  SS   Q ++ LTH+R ++EA +DF + E++
Sbjct: 123 LAQAEAIADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFPD-EEI 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              S  ++   +  + +D+    SQ + G ++R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 182 DFLSDGKIEAKLNEVVDDLEQVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREA 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L 
Sbjct: 242 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLF 301

Query: 305 LK-----EINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           +      +    +EI        P+ +    I  K+D      E           +S+  
Sbjct: 302 MVDSTTTDATEPQEIWPEFMARLPETLPVTVIRNKADKTGESIEFVADVRYPLIRLSARE 361

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIA 406
            +G++ L + +K  +            + +RHL  L+    +L        +    +++A
Sbjct: 362 EKGIDLLRDHLKETM-GFSGNTEGGFLARRRHLQALNNAATHLAQGYDQLVNARSGELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA + L +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQLELSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|255320708|ref|ZP_05361885.1| tRNA modification GTPase TrmE [Acinetobacter radioresistens SK82]
 gi|255302324|gb|EET81564.1| tRNA modification GTPase TrmE [Acinetobacter radioresistens SK82]
          Length = 451

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/450 (36%), Positives = 254/450 (56%), Gaps = 20/450 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      + +IRLSGP  + + E + ++  P  R A+ R F+  +  ++D+GL+
Sbjct: 6   TIAAIATPPGRGGVGVIRLSGPKAYMIAEQLTQRSLPKARMAAFRQFYDAEQLVMDEGLV 65

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAFENGK+DL+
Sbjct: 66  ICFPNPYSFTGEDVVELQGHGGPVIQNALLSRLFEL-GAIAAKAGEFSMRAFENGKLDLV 124

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE++ADLI + ++   R ++  + G  S      ++KL H+R  +EA +DF E E++  
Sbjct: 125 QAEAIADLIDATSQAAARSAVRSLQGAFSVKVNSVLEKLIHLRLHVEAAIDFPE-EEIDF 183

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            +  ++L  +  + + ++      + G+++R G ++VI G  NAGKSSL NALA  D AI
Sbjct: 184 LADGKILKLLDDVASSVTLVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGNDRAI 243

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTDI GTTRDVL   + L G  + ++DTAG+RET DIVE+EGI+R   E+E ADL+LL+ 
Sbjct: 244 VTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEQEGIRRAIKEIEQADLLLLVY 303

Query: 307 EINSKKE-ISFPKNI--------DFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGL 351
           +++  ++ +   +N           I IG K DL     E   +       +S+    G+
Sbjct: 304 DLSQGEDPLKLAQNYFAEHLEPKRLILIGNKCDLIGVQPEAGKYQGFRHISVSAKMETGV 363

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLR 410
           + LI  I +     F+    +  +  RHL  + +T  YL  A     D    +++AE+LR
Sbjct: 364 QTLIEAITN--HAGFQPEEDTFIARTRHLDAMKRTQAYLAEAREQLTDFHAGELVAESLR 421

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  +L +ITG    + LL  IF  FCIGK
Sbjct: 422 LAQNALSEITGEFSADDLLGKIFGSFCIGK 451


>gi|329925110|ref|ZP_08280054.1| tRNA modification GTPase TrmE [Paenibacillus sp. HGF5]
 gi|328940229|gb|EGG36561.1| tRNA modification GTPase TrmE [Paenibacillus sp. HGF5]
          Length = 458

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 152/458 (33%), Positives = 244/458 (53%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
            +TI A+ST      I+IIR+SGP   Q  E I K K    +  S    +G       G 
Sbjct: 3   SDTIAAISTAVGEGGIAIIRVSGPDSVQEVERIFKSKNKLTQVESHTVHYGHIVDPKTGE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            L++ L+ V  +P SFT ED  E   HGG+  V  +++ L ++  +RLA PGEF++RAF 
Sbjct: 63  NLEEVLVTVMRAPRSFTTEDVVEISAHGGVISVKRVMDLLLQLN-IRLAEPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI S+++    ++++ + G LS    +    L    + IE ++D+ 
Sbjct: 122 NGRIDLSQAEAVMDLIRSKSDRAFSVALKQVEGTLSRKINELRHTLVETLAHIEVNIDYP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  DV++ +S+ +      +  +I   +   + G+I+R G    I+G  N GKSSL N L
Sbjct: 182 EH-DVESLTSEFIKEKSKLVMGEIDKLLKTAQEGKILREGITTAIVGRPNVGKSSLLNTL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A+ + AIVTDIPGTTRDV+   + +    +K+ DTAGIRET D+VE+ G++R+   V  A
Sbjct: 241 AQDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRETMDVVEQIGVERSKHAVNEA 300

Query: 300 DLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYST---------YTEEYDHLIS 344
           DLILL+   +        + +   +    I I  K DL S          Y +E    +S
Sbjct: 301 DLILLVLNASEPLHQDELELMEQIRGRQCIVIMNKMDLPSNLDLDILHRYYPDELIVPMS 360

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
               EG++ L   I ++    + +    +  S+ RH+  L ++ + L+ A    ++   +
Sbjct: 361 VKAQEGIDRLEEAISNLFFSGQIEGGDLTYVSNVRHIALLKKSKQSLQDAYDAADQLIPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+I  ++R+A   L +I G    + L+D IFS+FC+GK
Sbjct: 421 DMIQIDVRMAWEQLSEILGEAVGDSLIDQIFSQFCLGK 458


>gi|262380662|ref|ZP_06073815.1| tRNA modification GTPase TrmE [Acinetobacter radioresistens SH164]
 gi|262297610|gb|EEY85526.1| tRNA modification GTPase TrmE [Acinetobacter radioresistens SH164]
          Length = 454

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/450 (36%), Positives = 254/450 (56%), Gaps = 20/450 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      + +IRLSGP  + + E + ++  P  R A+ R F+  +  ++D+GL+
Sbjct: 9   TIAAIATPPGRGGVGVIRLSGPKAYMIAEQLTQRSLPKARMAAFRQFYDAEQLVMDEGLV 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I FP+P SFTGED  E   HGG  + N +L  L ++     A  GEFS RAFENGK+DL+
Sbjct: 69  ICFPNPYSFTGEDVVELQGHGGPVIQNALLSRLFEL-GAIAAKAGEFSMRAFENGKLDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE++ADLI + ++   R ++  + G  S      ++KL H+R  +EA +DF E E++  
Sbjct: 128 QAEAIADLIDATSQAAARSAVRSLQGAFSVKVNSVLEKLIHLRLHVEAAIDFPE-EEIDF 186

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            +  ++L  +  + + ++      + G+++R G ++VI G  NAGKSSL NALA  D AI
Sbjct: 187 LADGKILKLLDDVASSVTLVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGNDRAI 246

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTDI GTTRDVL   + L G  + ++DTAG+RET DIVE+EGI+R   E+E ADL+LL+ 
Sbjct: 247 VTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEQEGIRRAIKEIEQADLLLLVY 306

Query: 307 EINSKKE-ISFPKNI--------DFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGL 351
           +++  ++ +   +N           I IG K DL     E   +       +S+    G+
Sbjct: 307 DLSQGEDPLKLAQNYFAEHLEPKRLILIGNKCDLIGVQPEAGKYQGFRHISVSAKMETGV 366

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLR 410
           + LI  I +     F+    +  +  RHL  + +T  YL  A     D    +++AE+LR
Sbjct: 367 QTLIEAITN--HAGFQPEEDTFIARTRHLDAMKRTQAYLAEAREQLTDFHAGELVAESLR 424

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  +L +ITG    + LL  IF  FCIGK
Sbjct: 425 LAQNALSEITGEFSADDLLGKIFGSFCIGK 454


>gi|157964067|ref|YP_001504101.1| tRNA modification GTPase TrmE [Shewanella pealeana ATCC 700345]
 gi|189036209|sp|A8HAH9|MNME_SHEPA RecName: Full=tRNA modification GTPase mnmE
 gi|157849067|gb|ABV89566.1| tRNA modification GTPase TrmE [Shewanella pealeana ATCC 700345]
          Length = 453

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 161/455 (35%), Positives = 247/455 (54%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P  R A    F    G ++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGDLATNVAIAVLG-HIPKTRYADYCDFKDEAGEVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  LR+A PGEFS +AF N K+
Sbjct: 61  GIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVDGLRIAKPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + ++  + GE S+     ++K+T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALNSLQGEFSTQIHDLVEKVTNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++   +  +   +    +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIAASLNGIVGKLDGVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VEK GI+R + E++ AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTVDTVEKIGIERAWDEIKTADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSF 346
            + +  +   I             P N+    +  K+DL       T+E  H    IS+ 
Sbjct: 300 FMVDGTTTAAIDPHEIWPDFIDRLPSNLGVTVVRNKADLTGEDLSVTQEAGHSVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+E+L   +KS++  +   L     + +RHL  L     +L +     E     +++
Sbjct: 360 TGLGVEDLKQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLMLGKEQLEVYQAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMCQMALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|327438167|dbj|BAK14532.1| predicted GTPase [Solibacillus silvestris StLB046]
          Length = 461

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 151/461 (32%), Positives = 249/461 (54%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL----- 56
           E +TI A+ST     AI+I+RLSG     + + I K    K     A+    +G      
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDEAVAIADKIFKSPNHKRLTEVATHTIHYGHLIDPK 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ++++ +L +   P++FT ED  E + HGGI  VN +L+ L      RLA PGEF++R
Sbjct: 62  TDEVVEEVMLSLMRGPKTFTREDVVEINCHGGIVSVNRVLQ-LVLRYGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G+LS L       L    + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLITSLRQALLETLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +   +L    +++ +I   +     G+I+R G   VILG  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTIPVLLEKCGWVREEIIKLLQTSSQGKILREGLSTVILGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSREAL 300

Query: 297 ENADLILLLK----EINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDH--------- 341
           ++ADLILL+     E+  + E  F   + +D+I +  K+D+         H         
Sbjct: 301 KDADLILLVLNYGEELTEEDERLFETIQAMDYIVVVNKTDIERKIDLNRVHELAGKHRVV 360

Query: 342 LISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S    EG+ EL   I ++    + +    +  S+ RH+  L Q  + +E A +  E  
Sbjct: 361 TTSLLKEEGVIELEEAIAALFFEGQVEANDLTYVSNARHIALLHQAQQVIEDALAAAESG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D+I  ++      LG+I G    E L++ +FS+FC+GK
Sbjct: 421 VPVDMIQIDVTRTWEILGEIIGDTVQESLINQLFSQFCLGK 461


>gi|315634810|ref|ZP_07890092.1| tRNA modification GTPase TrmE [Aggregatibacter segnis ATCC 33393]
 gi|315476362|gb|EFU67112.1| tRNA modification GTPase TrmE [Aggregatibacter segnis ATCC 33393]
          Length = 451

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 162/453 (35%), Positives = 249/453 (54%), Gaps = 20/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP    V   +   K P PR A    F   DG +LD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPKAADVAHAVLG-KCPKPRMADYLPFKDADGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F  P SFTGED  E   HGG  V++ +L+ +  +  +RLA PGEFS +AF N K+D
Sbjct: 61  ITLYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILLIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   +    ++ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEGHLNGIIAQLDQVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + L+G  + I DTAG+R+  D VE+ GI R + E+E AD ILL
Sbjct: 240 AIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDATDEVERIGISRAWNEIEQADRILL 299

Query: 305 LKEINSKKE----------ISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTG 348
           + + +  ++             P NI    I  K+DL       Y+        +S+ T 
Sbjct: 300 MLDSSDSEQDLAKVRSEFLAKLPNNIPVTIIRNKADLTGETERLYEQDGYTVVNLSAKTQ 359

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAE 407
           +G++ L   +K  +  +   +     + +RHL  L Q  ++L+   +        +++AE
Sbjct: 360 QGVDLLREHLKQAMGYQTG-IEGGFLARRRHLEALEQAAQHLQTGHIQLTQFHAGELLAE 418

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 419 ELRMVQDALSEITGQFTSDDLLTNIFSSFCIGK 451


>gi|110635800|ref|YP_676008.1| tRNA modification GTPase TrmE [Mesorhizobium sp. BNC1]
 gi|123353087|sp|Q11CN2|MNME_MESSB RecName: Full=tRNA modification GTPase mnmE
 gi|110286784|gb|ABG64843.1| tRNA modification GTPase trmE [Chelativorans sp. BNC1]
          Length = 442

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 202/437 (46%), Positives = 280/437 (64%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TIFA+S+G+LPS I++IR+SG     V E +        R A L   +  +  +LD+ 
Sbjct: 8   RDTIFALSSGSLPSGIAVIRISGADTRAVLERMAGG-LSEARFAKLTSIYSAEREVLDRA 66

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + FP+P SFTGED AE H+HGG AVV  +L ELA  P LR+A  GEF++RAF NGK++
Sbjct: 67  LCLFFPAPASFTGEDCAELHLHGGRAVVAAVLNELAAFPGLRMAEAGEFTKRAFLNGKMN 126

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE+L+DLI++ETE QRR ++   S     LY  W  +L H R+ IEA+LDF++E DV
Sbjct: 127 LTEAEALSDLIAAETEAQRRFALVNSSDMRKRLYDGWRRRLIHARAMIEAELDFADESDV 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +   V  DI  L+ +I  H S  +  EIIR+G++IVILG  NAGKSSL NALA++DV
Sbjct: 187 PGSAGATVWEDIRRLRQEIVEHASSYRKAEIIRDGFQIVILGAPNAGKSSLLNALARRDV 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+ PGTTRD+L + LD++G  V ++DTAGIRE    VE  GI+R+      ADL+LL
Sbjct: 247 AIVTEEPGTTRDILEVSLDIDGTKVVLADTAGIREAAGRVEALGIERSLRRANEADLVLL 306

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLY-STYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L+++ +      P+    I IG K+DL   T    Y+ LIS+ TG GL+ L+  I    +
Sbjct: 307 LEDVTNPSTPEVPQGKPVITIGNKADLITDTPAASYNCLISAKTGLGLDRLMELISQASA 366

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
                    +P  +RH+  L Q    LE A ++ ++ GL++ AE LRL+S++LG+I+G +
Sbjct: 367 GYSNFAGEILPFRERHVALLGQAADALE-AGIDGENIGLELRAECLRLSSLALGRISGEI 425

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LLD IFS FCIGK
Sbjct: 426 DVEDLLDAIFSTFCIGK 442


>gi|319406398|emb|CBI80039.1| tRNA modification GTPase [Bartonella sp. AR 15-3]
          Length = 435

 Score =  426 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 188/436 (43%), Positives = 267/436 (61%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G LPS ++I+RLSGP    + + +C    P  R          DG  LD  L
Sbjct: 2   DTIFAISSGLLPSGVAIVRLSGPQVRNIVKTLCG-CLPKARLMHYGDLIARDGSFLDSAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HG  AVVN   +EL    N RLA  GEFSRRAF  GK+DL
Sbjct: 61  TVFFPAPHSFTGEDCAEFHLHGSKAVVNRFFDELITFENCRLAEAGEFSRRAFVEGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AESLADLI +ETE QRRL++ G +G L+ LY  W  +L   R+ IEA+LDFS+E D+ 
Sbjct: 121 IQAESLADLIQAETESQRRLAIIGTNGTLTKLYRDWRQRLITARALIEAELDFSDESDIP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           N  S +V  DI  L++ +  HIS G+   I+ +G +I I+G  N GKSS+ N L+ + +A
Sbjct: 181 NSVSGKVWQDIEKLRDSLYEHISAGERASILNDGIRIAIVGAPNCGKSSIINRLSGRSIA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++  GTTRD L + L L G  V  +DTAG+RET++ +E  GI+ T   +  ADL++ +
Sbjct: 241 IVSEEEGTTRDALEVRLILGGLPVFFTDTAGLRETENKIELLGIETTKKNIIEADLVIFV 300

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            ++N+ +E+  PK + +   +G K DL       +    S+  G   +  I +I+     
Sbjct: 301 YDMNNPQEVLLPKTSAEIWHVGNKIDLCEGDKTRWPIQFSTLNGLNFDYFIKEIELFCLR 360

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +  ++   IP+ KR L  L + V  +  ASLN     L + AE+LR AS +LG+ITG +D
Sbjct: 361 RNTEIGNVIPARKRQLQLLKEVVEEI-NASLNSFSLDLSLRAEHLRRASHALGRITGDID 419

Query: 425 VEQLLDIIFSKFCIGK 440
           +E LLD IFS+FC+GK
Sbjct: 420 IEDLLDTIFSRFCVGK 435


>gi|307706532|ref|ZP_07643339.1| tRNA modification GTPase TrmE [Streptococcus mitis SK321]
 gi|307617987|gb|EFN97147.1| tRNA modification GTPase TrmE [Streptococcus mitis SK321]
          Length = 457

 Score =  426 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 147/458 (32%), Positives = 254/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTESFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSELINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTIEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   +  + I +  K+DL          E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQETNRIILLNKTDLPEAIETSELPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+  +   E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|168218051|ref|ZP_02643676.1| tRNA modification GTPase TrmE [Clostridium perfringens NCTC 8239]
 gi|182379938|gb|EDT77417.1| tRNA modification GTPase TrmE [Clostridium perfringens NCTC 8239]
          Length = 458

 Score =  426 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 151/458 (32%), Positives = 254/458 (55%), Gaps = 21/458 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------PFPRKASLRYFFGL 56
            E +TI A++T      I+IIR+SG    ++   I +           P      +    
Sbjct: 2   KEFDTIAAIATALGEGGIAIIRVSGNKALEIVNKIFRGINGKDLLDIKPYTMRYGHMIDE 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +  I+D+ ++     P SFT ED+ E + HGGI   N +L+ + K    RLA PGEF++R
Sbjct: 62  NNEIIDEVIVSFMKGPRSFTAEDTVEINCHGGIVATNKVLQNVIKA-GARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ D+I+++TE+  + +M    G LS+       +   I + IE D+
Sbjct: 121 AFLNGRIDLSQAEAVMDIITAKTELSMKSAMTQSQGRLSTEINNLRKEALDILALIEYDV 180

Query: 177 DFSEEEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           DF+E+++  + +   +V  D++ L+  +++ I     G++IR+G  +VI+G  N GKSSL
Sbjct: 181 DFTEDDEEPDETIPVKVKEDVITLRGKVNNLIDTADEGKLIRDGLSMVIVGKPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  +  AIVTDI GTTRDV+   ++L+G  V++ DTAGIRET+D+VEK G++++  +
Sbjct: 241 LNALLNEKRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAGIRETEDVVEKIGVEKSKEK 300

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD------HLI 343
           +  ADL++L+ + +       K+ I + K+  +I +  K DL    + E          +
Sbjct: 301 INEADLVILMLDTSRELDEEDKEIIDYIKDRKYIVLLNKVDLDRKLSSEIVDNLENKIEL 360

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-L 402
           S+ TG G+++L +KIK +  N        + ++ RH   L +    L+ A     +   L
Sbjct: 361 SAKTGFGIDDLKSKIKDLFFNGSIDAESVMVTNTRHKEALYRASENLDGALNGLNNNEFL 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+++  +  A  +LG+ITG    E L++ IF++FC GK
Sbjct: 421 DLVSIYVTSALRALGEITGAELEEDLVNKIFAEFCCGK 458


>gi|261410105|ref|YP_003246346.1| tRNA modification GTPase TrmE [Paenibacillus sp. Y412MC10]
 gi|261286568|gb|ACX68539.1| tRNA modification GTPase TrmE [Paenibacillus sp. Y412MC10]
          Length = 458

 Score =  426 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 152/458 (33%), Positives = 245/458 (53%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
            +TI A+ST      I+IIR+SGP   +  E I K K    ++ S    +G       G 
Sbjct: 3   SDTIAAISTAVGEGGIAIIRVSGPDSVREVERIFKSKNKLTQEESHTVHYGHIVDPKTGE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            L++ L+ V  +P SFT ED  E   HGG+  V  +++ L ++  +RLA PGEF++RAF 
Sbjct: 63  NLEEVLVTVMRAPRSFTTEDVVEISAHGGVISVKRVMDLLLQLN-IRLAEPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI S+++    ++++ + G LS    +    L    + IE ++D+ 
Sbjct: 122 NGRIDLSQAEAVMDLIRSKSDRAFSVALKQVEGTLSRKINELRHTLVETLAHIEVNIDYP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  DV++ +S+ +      +  +I   +   + G+I+R G    I+G  N GKSSL N L
Sbjct: 182 EH-DVESLTSEFIKEKSKLVMGEIDKLLKTAQEGKILREGITTAIVGRPNVGKSSLLNTL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A+ + AIVTDIPGTTRDV+   + +    +K+ DTAGIRET D+VE+ G++R+   V  A
Sbjct: 241 AQDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRETMDVVEQIGVERSKHAVNEA 300

Query: 300 DLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYST---------YTEEYDHLIS 344
           DLILL+   +        + +   +    I I  K DL S          Y +E    +S
Sbjct: 301 DLILLVLNASEPLHQDELELMEQIRGRQCIVIMNKMDLPSNLDLDILHRYYPDELIVPMS 360

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
               EG++ L   I ++    + +    +  S+ RH+  L ++ + L+ A    E+   +
Sbjct: 361 VKAQEGIDRLEEAISNLFFSGQIEGGDLTYVSNVRHIALLKKSKQSLQDAYDAAEQLIPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+I  ++R+A   L +I G    + L+D IFS+FC+GK
Sbjct: 421 DMIQIDVRMAWEQLSEILGEAVGDSLIDQIFSQFCLGK 458


>gi|82703888|ref|YP_413454.1| tRNA modification GTPase TrmE [Nitrosospira multiformis ATCC 25196]
 gi|123543757|sp|Q2Y5A9|MNME_NITMU RecName: Full=tRNA modification GTPase mnmE
 gi|82411953|gb|ABB76062.1| tRNA modification GTPase trmE [Nitrosospira multiformis ATCC 25196]
          Length = 452

 Score =  426 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 251/456 (55%), Gaps = 20/456 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    + I A++T      I ++R+SG +   +   +     P PR+ASL  F   + R+
Sbjct: 1   MTR-SDVIAAIATPPGRGGIGVVRVSGRNLQSLALKVAG-CVPEPRRASLTRFRDENDRV 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + FP+P+S+TGE+  E   HGG AV+N +L         RLA PGEF+ RAF N
Sbjct: 59  IDQGIALYFPAPQSYTGEEVLELQGHGGPAVMNLLLASCLSA-GARLAQPGEFTLRAFLN 117

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + TE   R ++  + GE S+     +  LT +R  +EA LDFSE
Sbjct: 118 NKLDLAQAESVADLIDASTEEAARCAIRSLQGEFSNAIHTSVQALTDLRMLVEASLDFSE 177

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+++  S +E+   +  ++  +    S  + G ++R G  I ++G  N GKSSL N LA
Sbjct: 178 -EEIEFISGRELEFRLEHIRQQLEQVFSAARQGSLLREGIWIALVGQPNVGKSSLLNRLA 236

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++VA+VT++PGTTRDV+   +++EG  + + DTAG+RET+D +EK G+ RT   ++ A 
Sbjct: 237 GEEVALVTEVPGTTRDVIRQVIEIEGVPMHLLDTAGLRETEDAIEKMGMARTRSTIDKAS 296

Query: 301 LILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLISS 345
           ++LLL +        +     S P  +  I +  K+DL         ST T   D  +S+
Sbjct: 297 IVLLLVDSRVGITPEDQAILASLPPGLRLIVVHNKTDLLESPPNSTVSTATATADIWVSA 356

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDI 404
            TG G+  L   +  ++  +      +  + +RHL  L+    +LE A         +++
Sbjct: 357 KTGAGIGSLQQGLLEMIGWQPSTGEGAFMARQRHLSALTAARTHLEAACALANSLDQVEL 416

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE LRLA ++L  ITG    + LL  IFS+FCIGK
Sbjct: 417 FAEELRLAQLALSSITGEFSADDLLGEIFSRFCIGK 452


>gi|331007811|ref|ZP_08330916.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma
           proteobacterium IMCC1989]
 gi|330418378|gb|EGG92939.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma
           proteobacterium IMCC1989]
          Length = 471

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 162/463 (34%), Positives = 249/463 (53%), Gaps = 28/463 (6%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRI 60
            +  +TI A++T      + IIR+SG     + E I + +   PR A    F   D    
Sbjct: 13  TYSTDTIAAIATAPGRGGVGIIRISGAKALAIGEKISQHRL-TPRYAHYGDFIDPDTQET 71

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP+P SFTGED  E H HGG  V++ +L  +       LA PGEFS RAF N
Sbjct: 72  LDQGISLFFPNPHSFTGEDVVELHGHGGPIVLDQLL-RVITRSGATLAKPGEFSERAFLN 130

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S      +++LT +R ++EA +DF E
Sbjct: 131 DKMDLTQAEAIADLIDANSEQAMRNALNSLQGAFSEQIHTLVEQLTQLRIYVEAAIDFPE 190

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++     + + + +  +   ++   +Q K G ++R G K+VI G  NAGKSSL NALA
Sbjct: 191 -EEIDFLQDQHIHSQLHDIHRQLNKVFTQAKQGVLVREGMKVVIAGKPNAGKSSLLNALA 249

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + L+G  + I DTAG+R ++D+VE+ GI+R ++E+E AD
Sbjct: 250 GREAAIVTNIAGTTRDVLREHIHLDGMPLHIIDTAGLRSSNDVVEQIGIERAWVEIEQAD 309

Query: 301 LILLLKEINS------------KKEISFPKNIDFI-----FIGTKSDL------YSTYTE 337
            ILLL +  +            ++ I   K+ +        I  K D        S    
Sbjct: 310 RILLLIDSTNYNADTPDINTEIRQFIDDNKHKNIDISRISVICNKIDQSGITPNTSMIDN 369

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
                +S+    G+E L++ +KS++  K         + +RHL  L++    L  A    
Sbjct: 370 IPVIYLSAKANTGIELLVSHLKSVMGYK-NTAEGGFTARRRHLDALTRADESLVHAMQQL 428

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +    +++AE+LRL+   LG+ITG V  + LL  IFS FCIGK
Sbjct: 429 QLGAGELLAEDLRLSQQHLGEITGEVSADDLLGKIFSSFCIGK 471


>gi|56422029|ref|YP_149347.1| tRNA modification GTPase TrmE [Geobacillus kaustophilus HTA426]
 gi|261420902|ref|YP_003254584.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC61]
 gi|319768573|ref|YP_004134074.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC52]
 gi|81346199|sp|Q5KU57|MNME_GEOKA RecName: Full=tRNA modification GTPase mnmE
 gi|56381871|dbj|BAD77779.1| thiophen/furan oxidation protein [Geobacillus kaustophilus HTA426]
 gi|261377359|gb|ACX80102.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC61]
 gi|317113439|gb|ADU95931.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC52]
          Length = 462

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 150/462 (32%), Positives = 248/462 (53%), Gaps = 25/462 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL---- 56
            E +TI A+ST     AI+I+RLSG    ++ + + +    K      S    +G     
Sbjct: 2   TEFDTIAAISTPMGEGAIAIVRLSGDQAVEIADRLFRSPSGKRLKDVPSHTIHYGHIIDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             GR++++ ++ V  +P++FT ED  E + HGG   VN +L+ L      RLA PGEF++
Sbjct: 62  KSGRVVEEVMVSVMRAPKTFTREDVVEINCHGGFVSVNRVLQ-LVLANGARLAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    ++++ M G LS L  +    +    + +E +
Sbjct: 121 RAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETLAHVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  + + +     +++  I   +S    G+I+R G   VI+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTPRLLREKAEYVRGQIEKLLSTAAQGKILREGLATVIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+D+VE+ G++R+   
Sbjct: 241 LNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDVVERIGVERSQQM 300

Query: 296 VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------- 342
           ++ ADLILL+           ++  +  + +D I I  K+DL      E           
Sbjct: 301 LKRADLILLVLNYHEPLTEEDERLFAMIEGMDAIVIVNKTDLPRRIDMERVKELAAGRPV 360

Query: 343 --ISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEK 398
              S    +G++EL   I  +      +    +  S+ RH+  L Q    +E A    + 
Sbjct: 361 VGTSLLHEQGIDELEKAIADLFFGGELEAGDLTYVSNSRHIALLEQAKTAIEDALAGIDA 420

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +LR A   LG+I G    E L+D +F++FC+GK
Sbjct: 421 GMPVDLVQIDLRRAWELLGEIIGDTVHESLIDQLFAQFCLGK 462


>gi|167626215|ref|YP_001676509.1| tRNA modification GTPase TrmE [Shewanella halifaxensis HAW-EB4]
 gi|189036208|sp|B0TQH0|MNME_SHEHH RecName: Full=tRNA modification GTPase mnmE
 gi|167356237|gb|ABZ78850.1| tRNA modification GTPase TrmE [Shewanella halifaxensis HAW-EB4]
          Length = 453

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 157/455 (34%), Positives = 245/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SG     V   +     P  R A    F    G ++D+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGDLASNVAMAVLG-HIPKTRYADYCDFKEDSGEVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + ++  LR+A PGEFS +AF N K+
Sbjct: 61  GIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVDGLRIAKPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + ++  + GE S+     ++K+T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALNSLQGEFSTQVHDLVEKVTNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++   +  +   +    +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIAASLNGIIGKLDGVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + L+G  + I DTAG+R+T D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTADTVEKIGIERAWDEIRTADRVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSF 346
            + +  +   +             P N+    +  K+DL       +T      + IS+ 
Sbjct: 300 FMVDGTTTPAVDPHEIWPDFIDRLPNNLGVTVVRNKADLTGEDLAITTEAGHSVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G+++L   +KS++  +   L     + +RHL  L     +L +     E     +++
Sbjct: 360 TGLGVDDLKQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLLLGKEQLEVYQAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+  ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMCQMALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|289167974|ref|YP_003446243.1| tRNA modification GTPase TrmE [Streptococcus mitis B6]
 gi|288907541|emb|CBJ22378.1| tRNA modification GTPase TrmE [Streptococcus mitis B6]
          Length = 457

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 146/458 (31%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTESFSIAQKIFKGKD-LSQVASHTLNYGHIVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   +  + I +  K+DL          E    IS 
Sbjct: 300 LKEADLVLLVLNASESLTVQDRQLLEISQETNRIILLNKTDLPEAIETSELPEDLIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+  +   E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|293365349|ref|ZP_06612066.1| thiophene and furan oxidation protein ThdF [Streptococcus oralis
           ATCC 35037]
 gi|307703891|ref|ZP_07640832.1| tRNA modification GTPase TrmE [Streptococcus oralis ATCC 35037]
 gi|291316799|gb|EFE57235.1| thiophene and furan oxidation protein ThdF [Streptococcus oralis
           ATCC 35037]
 gi|307622726|gb|EFO01722.1| tRNA modification GTPase TrmE [Streptococcus oralis ATCC 35037]
          Length = 457

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 146/458 (31%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIIDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSRKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K+DL          E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLQEAIETEELPEDIIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
                ++++  +I ++        +   +  S+ RH+  + + V  L+  +   E    +
Sbjct: 360 LKNRNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|110802832|ref|YP_699904.1| tRNA modification GTPase TrmE [Clostridium perfringens SM101]
 gi|123047103|sp|Q0SPQ3|MNME_CLOPS RecName: Full=tRNA modification GTPase mnmE
 gi|110683333|gb|ABG86703.1| tRNA modification GTPase TrmE [Clostridium perfringens SM101]
          Length = 458

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 150/458 (32%), Positives = 254/458 (55%), Gaps = 21/458 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------PFPRKASLRYFFGL 56
            E +TI A++T      I+IIR+SG    ++   I +           P      +    
Sbjct: 2   KEFDTIAAIATALGEGGIAIIRVSGNKALEIVNKIFRGINGKDLLDIKPYTMRYGHMIDE 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +  I+D+ ++     P SFT ED+ E + HGGI   N +L+ + K    RLA PGEF++R
Sbjct: 62  NNEIIDEVIVSFMKGPRSFTAEDTVEINCHGGIVATNKVLQNVIKA-GARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ D+I+++TE+  + +M    G LS+       +   I + IE  +
Sbjct: 121 AFLNGRIDLSQAEAVMDIITAKTELSMKSAMTQSQGRLSTEINNLRKEALDILALIEYAV 180

Query: 177 DFSEEEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           DF+E+++  + +   +V  D++ L+  +++ I     G++IR+G  +VI+G  N GKSSL
Sbjct: 181 DFTEDDEEPDETIPVKVKEDVITLRGKVNNLIDTADEGKLIRDGLSMVIVGKPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  ++ AIVTDI GTTRDV+   ++L+G  V++ DTAGIRET+D+VEK G++++  +
Sbjct: 241 LNALLNENRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAGIRETEDVVEKIGVEKSKEK 300

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD------HLI 343
           +  ADL++L+ + +       K+ I + K+  +I +  K DL    + E          +
Sbjct: 301 INEADLVILMLDTSRELDEEDKEIIDYIKDRKYIVLLNKVDLDRKLSSEIVDNLENKIEL 360

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-L 402
           S+ TG G+++L +KIK +  N        + ++ RH   L +    L+ A     +   L
Sbjct: 361 SAKTGFGIDDLKSKIKDLFFNGSIDAESVMVTNTRHKEALYRASENLDGALNGLNNNEFL 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+++  +  A  +LG+ITG    E L++ IF++FC GK
Sbjct: 421 DLVSIYVTSALRALGEITGAELEEDLVNKIFAEFCCGK 458


>gi|254483166|ref|ZP_05096399.1| tRNA modification GTPase TrmE [marine gamma proteobacterium
           HTCC2148]
 gi|214036537|gb|EEB77211.1| tRNA modification GTPase TrmE [marine gamma proteobacterium
           HTCC2148]
          Length = 460

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/457 (35%), Positives = 244/457 (53%), Gaps = 24/457 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A++T      + I+RLSGP    + E I       PR A    F   +  +LD 
Sbjct: 8   DGDTIAAIATAPGRGGVGIVRLSGPEALVIGESISGLTLS-PRHAHFSKFKNSNENVLDS 66

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E H HGG  V++ +++        R A PGEFS RA+ N KI
Sbjct: 67  GIALYFPGPHSFTGEDVVELHGHGGPVVLDLLIKTCI-NYGARQARPGEFSERAYLNDKI 125

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI+S TE     +   + G  S      +  +T +R ++EA +DF E E+
Sbjct: 126 DLTQAEAIADLINSTTEHAALNASRSLQGVFSQKIDALVTSVTQLRVYVEAAIDFPE-EE 184

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +      +V N +  +   +++ + Q K G + + G K+VI G  NAGKSSL NAL+ +D
Sbjct: 185 IDFIQDGQVSNQLSAIIAQLNAVMHQAKQGSLQQEGMKLVIAGKPNAGKSSLLNALSGQD 244

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT I GTTRDVL   + ++G  + I DTAG+R + D VEKEGI+R + E+E+AD IL
Sbjct: 245 TAIVTAIEGTTRDVLREHIQIDGMPLHIVDTAGLRNSADEVEKEGIRRAWNEIESADHIL 304

Query: 304 LLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEEYD------HLIS 344
           L+ + ++ ++ S             F +NI    I  K DL        D        +S
Sbjct: 305 LVVDGSNPEQHSNDPSVIWPDFTEHFSRNIPVSVIRNKCDLSQHEPSVTDSVNYCTIELS 364

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-D 403
           + TG G+  L   +K+ +  + +    +  + +RHL  L    + L       ++ G  +
Sbjct: 365 AKTGAGMTLLKEHLKTCMGYR-QGNETNFSARRRHLLSLEGAAKSLTAGQHQLENAGAGE 423

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+LR     LG+ITG V  +QLL  IFS FCIGK
Sbjct: 424 LLAEDLRACQNLLGEITGAVSSDQLLGEIFSSFCIGK 460


>gi|322374354|ref|ZP_08048868.1| tRNA modification GTPase TrmE [Streptococcus sp. C300]
 gi|321279854|gb|EFX56893.1| tRNA modification GTPase TrmE [Streptococcus sp. C300]
          Length = 457

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 145/458 (31%), Positives = 251/458 (54%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIIDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIR+TDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGVERSRKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   +  + I +  K+DL          E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQVTNRIILLNKTDLPEAIETSELPEDIIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
              + ++++  +I  +        +   +  S+ RH+  + + V  L+      E    +
Sbjct: 360 LKNQNIDKIEERINDLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|169635752|emb|CAQ16330.1| t-RNA modification GTPase protein [Brevibacterium linens]
          Length = 457

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/463 (34%), Positives = 247/463 (53%), Gaps = 29/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   ETI AV+T      + I+R+SGP    +      +++  PR A    F+G +  +
Sbjct: 1   MSVAAETIAAVATARGRGGVGIVRISGPLA-SIAAKAFSERELKPRYAHYGPFYGENREV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCIQL-GCRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLGMLDKVRQELSTVMREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTE----EYDHLISS 345
            +LL+ +  + +               P       I  K+DL          +  H+  S
Sbjct: 298 RVLLVVDATAPEADDPFALWPEFLQQRPDPAKVTLIRNKADLTGEDIRLQVCDDGHVTIS 357

Query: 346 FT------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNE 397
            +      G+GLE L + +K+ +    +    S  + +RHL  L      LE   A L  
Sbjct: 358 LSARSTDAGDGLELLRDHLKACM-GYEQTSESSFSARRRHLEALRHASDALEHGRAQLTL 416

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              G +++AE+LR A  SLG+ITG    + LL  IFS  CIGK
Sbjct: 417 AGAG-ELLAEDLRQAQHSLGEITGAF-RDDLLGRIFSSLCIGK 457


>gi|294501987|ref|YP_003565687.1| tRNA modification GTPase TrmE [Bacillus megaterium QM B1551]
 gi|294351924|gb|ADE72253.1| tRNA modification GTPase TrmE [Bacillus megaterium QM B1551]
          Length = 462

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 151/461 (32%), Positives = 244/461 (52%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL----- 56
           + +TI A+ST     AI+I+RLSG     + + I K    K     AS    +G      
Sbjct: 3   DFDTIAAISTPMGEGAIAIVRLSGEEAITIADRIFKSVSNKRLTDVASHTIHYGHIVDPK 62

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +++++ +L +   P++FT ED  E + HGGI  VN +L+ L      RLA PGEF++R
Sbjct: 63  TEQVVEEVMLSIMKGPKTFTREDIIEINCHGGIVSVNRVLQ-LVIANGARLAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++
Sbjct: 122 AFLNGRVDLSQAEAVMDLIRAKTDKAMNMAIGQMEGRLSKLVRHLRQEILETLAHVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  + + ++     ++ +I   +     G+I+R G   VI+G  N GKSSL 
Sbjct: 182 DYPEYDDVEEMTHQVLIEKASNVRQEIDKLLQTSHQGKILREGLATVIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +   AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 242 NSLVQDAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQYL 301

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------- 343
           + ADLILL+   N       KK     K +D I I  K+DL      E            
Sbjct: 302 KEADLILLVLNFNEELTDEDKKLFEAVKGMDVIVIVNKTDLEQKINLEEVQQFAGDHPVV 361

Query: 344 --SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKD 399
             S    +G+++L   I ++      +    +  S+ RH+  L+Q    ++ A    E  
Sbjct: 362 TTSLLQEQGIDQLEEAIAALFFGGTIESQDLTYLSNTRHIALLTQARGAIDEAITGIESG 421

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DI+  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 422 VPIDIVQIDLTRTWELLGEIIGDAVHESLIDQLFSQFCLGK 462


>gi|295398145|ref|ZP_06808194.1| tRNA modification GTPase TrmE [Aerococcus viridans ATCC 11563]
 gi|294973664|gb|EFG49442.1| tRNA modification GTPase TrmE [Aerococcus viridans ATCC 11563]
          Length = 463

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 149/463 (32%), Positives = 248/463 (53%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL--- 56
           +    +TI A+S+     AI I+RLSG     + + + K  +K    + S    +G    
Sbjct: 2   ITRGFDTIAAISSAPGEGAIGIVRLSGDDALAIADKVYKLGQKKLSTQDSHTIHYGHIVD 61

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             DG+ +D+ ++ V   P++FT ED  E + HGGI   N +LE L       LA PGEF+
Sbjct: 62  PKDGQEIDEVMVSVMREPKTFTREDIVEINTHGGIVATNRVLE-LVLREGATLAEPGEFT 120

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG+IDL +AE++ DLI ++T+    L+++ + G+LS+L       + +  + +E 
Sbjct: 121 KRAFINGRIDLTQAEAVMDLIRAKTDRSMDLAVKQLDGKLSNLIENLRQDILNTLAQVEV 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  + K +      +K+ I   +S  K G+I+R+G    I+G  N GKSS
Sbjct: 181 NIDYPEYDDVEEMTLKLLGEKTTIIKDRIDGLLSTAKQGKILRDGISTAIVGRPNVGKSS 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL +++ AIVTDI GTTRD +   +++ G  +K+ DTAGIR+T+D+VE+ G++R+  
Sbjct: 241 LLNALLREEKAIVTDIEGTTRDTVEEYINIRGVPLKLVDTAGIRDTEDVVERIGVERSKK 300

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------- 339
            +  A+L+LLL           ++ +S  ++   I I  K DL S   +E          
Sbjct: 301 ALMEAELVLLLLNQSEALTAGDRELLSLTQDHKRIIIMNKIDLPSQLLKESLLEWVEEDE 360

Query: 340 DHLISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNE 397
               S  T EG++ L  KI     S +  +   +  S+ RH+  L +  + L+   +  +
Sbjct: 361 IIATSMMTQEGIDALEEKIADYFFSGQSGEKDATYVSNARHIDLLQKASQSLDEVRNGID 420

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D+I  +   A   LG+I G    ++LL  +FS+FC+GK
Sbjct: 421 MGMPVDLIQIDFTRAWEILGEIIGENAPDELLTQLFSQFCLGK 463


>gi|212712606|ref|ZP_03320734.1| hypothetical protein PROVALCAL_03701 [Providencia alcalifaciens DSM
           30120]
 gi|212684822|gb|EEB44350.1| hypothetical protein PROVALCAL_03701 [Providencia alcalifaciens DSM
           30120]
          Length = 454

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 165/454 (36%), Positives = 244/454 (53%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A +T      + I+R+SGP    V E +   K P PR A    F   DG +LD+G
Sbjct: 4   NDTIVAQATAPGRGGVGILRVSGPQAALVAETVLG-KLPKPRYADYLPFRDADGSVLDQG 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + I FP P SFTGED  E   HGG  +++ +L  +  + N+R+ANPGEFS RAF N K+D
Sbjct: 63  IAIYFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTIANIRIANPGEFSERAFLNDKLD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +M  + G  SS   Q ++ LTH+R ++EA +DF + E++
Sbjct: 123 LAQAEAIADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFPD-EEI 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              S  ++   +  +  D+    SQ + G ++R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 182 DFLSDGKIEAKLNEVVADLDQVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREA 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L 
Sbjct: 242 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLF 301

Query: 305 LK-----EINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           +      +    +EI        P+ +    I  K+D      E           +S+  
Sbjct: 302 MVDSTTTDATEPQEIWPEFMARLPETLPVTVIRNKADKTGESVEFVADARYPLIRLSARE 361

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIA 406
            +G++ L + +K  +            + +RHL  L+    +L        +    +++A
Sbjct: 362 EKGIDLLRDHLKETM-GFNSNTEGGFLARRRHLQALNNAATHLAQGYDQLVNARSGELLA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 421 EELRLAQQELSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|297531687|ref|YP_003672962.1| tRNA modification GTPase TrmE [Geobacillus sp. C56-T3]
 gi|297254939|gb|ADI28385.1| tRNA modification GTPase TrmE [Geobacillus sp. C56-T3]
          Length = 462

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 150/462 (32%), Positives = 248/462 (53%), Gaps = 25/462 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL---- 56
            E +TI A+ST     AI+I+RLSG    ++ + + +    K      S    +G     
Sbjct: 2   TEFDTIAAISTPMGEGAIAIVRLSGDQAVEIADRLFRSPSGKRLKDVPSHTIHYGHIIDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             GR++++ ++ V  +P++FT ED  E + HGG   VN +L+ L      RLA PGEF++
Sbjct: 62  KSGRVVEEVMVSVMRAPKTFTREDVVEINCHGGFVSVNRVLQ-LVLANGARLAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI ++T+    ++++ M G LS L  +    +    + +E +
Sbjct: 121 RAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETLAHVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  + + +     +++  I   +S    G+I+R G   VI+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTPRLLREKAEYVRGQIEKLLSTAAQGKILREGLATVIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+D+VE+ G++R+   
Sbjct: 241 LNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDVVERIGVERSQQM 300

Query: 296 VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------- 342
           ++ ADLILL+           ++  +  + +D I I  K+DL      E           
Sbjct: 301 LKRADLILLVLNYHEPLTEEDERLFAMIEGMDAIVIVNKTDLPRRIDMERVKELAAGRPV 360

Query: 343 --ISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEK 398
              S    +G++EL   I  +      +    +  S+ RH+  L Q    +E A    + 
Sbjct: 361 VATSLLHEQGIDELEKAIADLFFGGELEAGDLTYVSNSRHIALLEQAKTAIEDALAGIDA 420

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +LR A   LG+I G    E L+D +F++FC+GK
Sbjct: 421 GMPVDLVQIDLRRAWELLGEIIGDTVHESLIDQLFAQFCLGK 462


>gi|118591441|ref|ZP_01548839.1| tRNA modification GTPase [Stappia aggregata IAM 12614]
 gi|118436113|gb|EAV42756.1| tRNA modification GTPase [Stappia aggregata IAM 12614]
          Length = 449

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 180/449 (40%), Positives = 271/449 (60%), Gaps = 16/449 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDKG 64
           +TIFA+S+GA+PS ++++R+SGP    + E +  +  P PRK  L        G +LD+ 
Sbjct: 3   DTIFALSSGAVPSGVAVLRVSGPKTRGIVEALAGR-VPEPRKTMLAKLRHPETGDVLDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F  P SFTGED AEF  HGG AVV+G+L  L+  P  R A  GEF+RRAF+ G++D
Sbjct: 62  LVLYFEGPASFTGEDVAEFQCHGGRAVVSGLLSVLSTFPQCRPAEAGEFTRRAFDRGRMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI++ETE QR+ ++  M G L  LY  W  +L H+R+ IEAD DF++EEDV
Sbjct: 122 LTEVEGLADLIAAETESQRKQAVRQMGGALGKLYDDWRKRLIHMRAMIEADFDFADEEDV 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + EV ++   L  +I+ H+ + + GE +R+G ++V++G  NAGKSSL NA+A ++V
Sbjct: 182 PGSVADEVWSEARQLHAEIAEHLEKSRSGERLRSGLQVVLMGAPNAGKSSLLNAIAGREV 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+  GTTRDV+ + LDL GY V + DTAG+R+T+ +VEKEGI+R       ADLIL 
Sbjct: 242 AIVTEEAGTTRDVIEVHLDLSGYPVTLVDTAGLRQTEGVVEKEGIRRAEERGRGADLILW 301

Query: 305 LK--------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLISSFTGEGL 351
                     +  +        ++    + TK+DL +   ++      +   SS + EG+
Sbjct: 302 AVEPGGVEHDDAGAGLPSDLRSSVPVWTVRTKADLETLPKQDSSGTTQEIACSSKSVEGM 361

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
             L  ++              + + +RH ++L+  +  L  A+++      ++ AE+LR 
Sbjct: 362 NPLFFRLTRFAEETISLGEAPLATRERHRHYLNDCLSGL-RAAVDMDHLPAELRAEDLRK 420

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A+ +LG+ITG +DVE LLD+IF  FCIGK
Sbjct: 421 AADALGRITGRIDVEDLLDVIFRDFCIGK 449


>gi|187479888|ref|YP_787913.1| tRNA modification GTPase TrmE [Bordetella avium 197N]
 gi|123513530|sp|Q2KTI2|MNME_BORA1 RecName: Full=tRNA modification GTPase mnmE
 gi|115424475|emb|CAJ51029.1| probable tRNA modification GTPase [Bordetella avium 197N]
          Length = 450

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/448 (36%), Positives = 240/448 (53%), Gaps = 17/448 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
            I A++T      I ++R+SGP        +  +    PR A    F   DG  +D+G+ 
Sbjct: 6   PIAAIATAPGRGGIGVVRVSGPRLDAYIRALLGR-DLTPRHAHYLPFLAEDGERIDEGIA 64

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRAFENGKI 123
           I F  P S+TGED  E   HGG AV+  +L    +      +RLA PGEF+RRAF N ++
Sbjct: 65  IYFQGPHSYTGEDVLELQGHGGPAVLKRLLARCLEAGRSLGMRLAEPGEFTRRAFLNDRM 124

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R +M  +SGE S        ++ H+R  +EA LDF E E+
Sbjct: 125 DLAQAEAVADLIEASSEAAARGAMASLSGEFSQRINDLSGRIVHLRMLVEATLDFPE-EE 183

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +      +    +  L+ D+ + I+Q + G I+R G  +V+ G  N GKSSL NALA  D
Sbjct: 184 IDFLEKYQARPTLDGLRQDLDTLIAQARQGIILREGLHVVLAGQPNVGKSSLLNALAGDD 243

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIVT I GTTRD +  ++ ++G  + I DTAG+RET+D VE  GI RT+ E+E ADLIL
Sbjct: 244 IAIVTPIAGTTRDKVVQEIFIDGVPLHIVDTAGLRETEDTVESIGIARTWKEIERADLIL 303

Query: 304 LLKEINSKKEI-------SFPKNIDFIFIGTKSDLYSTYTE--EYDHLISSFTGEGLEEL 354
            L++  +  +I         P     + +  K DL ++  +  E    IS+  G GLEEL
Sbjct: 304 HLQDATAPGDILDVDITARLPARTPVLAVFNKIDLLTSTAQLAENSIGISAKQGLGLEEL 363

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLA 412
             ++  +             + +RHL+ L     +L++A+ +       LD+ AE LRL+
Sbjct: 364 RARLLQMA-GWNPGAESPWLARERHLHALQAARDHLDIAAEHASHDDRVLDLFAEELRLS 422

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             SL  ITG    + LL  IFS FCIGK
Sbjct: 423 HESLSSITGKFTSDDLLGEIFSSFCIGK 450


>gi|255527592|ref|ZP_05394456.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7]
 gi|296186790|ref|ZP_06855191.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7]
 gi|255508725|gb|EET85101.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7]
 gi|296048504|gb|EFG87937.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7]
          Length = 459

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/460 (34%), Positives = 263/460 (57%), Gaps = 24/460 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD- 57
            E +TI A+ST      ISIIR+SG    ++   + +    KK    +  ++RY F ++ 
Sbjct: 2   KEFDTIAAISTVLGEGGISIIRVSGDKALKIVSGLFRGVNEKKLDDIKPYTIRYGFIIEK 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G  LD+ L+    +P SFT ED+ E + HGG+     ILEE+ K    R+A PGEF++
Sbjct: 62  DTGDTLDEVLVSYMKAPRSFTAEDTVEINCHGGVVATQRILEEVVK-NGARIAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I ++TE+  + ++    G++S       +KL  I + IEA 
Sbjct: 121 RAFLNGRIDLSQAEAVIDIIRAKTELSMKSAVAQSKGKVSEEINLIRNKLLEIVAHIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D++  ++ +V   +  +  D+++ +   + G+IIR G   VI+G  N GKSSL
Sbjct: 181 VDYPE-DDLEEVTADKVTMQLKDVVGDVNNILKTAEEGKIIREGLNTVIVGKPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N+L ++  AIVT+IPGTTRDV+   ++++G  VKI DTAGIRET+D VEK G++++  +
Sbjct: 240 LNSLLREKRAIVTEIPGTTRDVIEEYINIDGVPVKIVDTAGIRETNDFVEKIGVEKSKEK 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDH 341
           +  ADLI+L+ +++       ++ I + K+  +I +  KSDL     +E        Y  
Sbjct: 300 INEADLIILMLDLSRELDNEDREIIDYIKDKKYIILLNKSDLGGKINKEDIKNLNSNYIV 359

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400
             S+ TGEGL++L   I+ +           + ++ RH   L +       A    K+  
Sbjct: 360 ETSAKTGEGLDKLRECIRELFFKGEVTSKDILITNTRHKEALIRANESCAQALDALKNTA 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D+ + ++R A ++LG+ITG    E +++ IFS+FC+GK
Sbjct: 420 AIDLASIDIRNAWMNLGEITGDTLEEDIINKIFSEFCLGK 459


>gi|325201374|gb|ADY96828.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240149]
          Length = 448

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 165/453 (36%), Positives = 251/453 (55%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCG-KTPKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGVNDKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +      +  +      +  RH+  L      L +A+L      +++ AE
Sbjct: 358 GDGLDALKRTLLREAGWQ-GEGEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELFAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|299541770|ref|ZP_07052093.1| tRNA modification GTPase trmE [Lysinibacillus fusiformis ZC1]
 gi|298725508|gb|EFI66149.1| tRNA modification GTPase trmE [Lysinibacillus fusiformis ZC1]
          Length = 461

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 153/461 (33%), Positives = 248/461 (53%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL----- 56
           E +TI A+ST     AI+I+RLSG     + + I K    K    K S    +G      
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDEAVTIADKIFKSPGGKSLTTKDSHTIHYGHLVDPK 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ++++ +L +   P++FT ED  E + HGG+  V  +L+ LA     RLA PGEF++R
Sbjct: 62  TNEVVEEVMLSLMRGPKTFTREDVVEINCHGGLVSVKRVLQ-LALTSGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G+LS L G     L    + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLIGDLRQALLETLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +   ++    ++KN+I   +     G+I+R G   VILG  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTVPVLIEKCTWVKNEIIKLLQTSSQGKILREGLSTVILGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSREAL 300

Query: 297 ENADLILLLK----EINSKKEISFP--KNIDFIFIGTKSDLYSTYT---------EEYDH 341
             ADLIL +     E+ ++ E  F   + +D+I I  K+DL              E    
Sbjct: 301 RGADLILFVLNYADELTAEDERLFETIEAMDYIVIVNKTDLPQKIDLARVKELAGEHRIV 360

Query: 342 LISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD- 399
             S    EG+ EL   I ++    + +    +  S+ RH+  L Q    +E A    +D 
Sbjct: 361 TTSLLQEEGITELEEAIAALFFEGQIEAGDLTYVSNARHIALLHQAQATVEDAIAAAQDG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  ++      LG+I G    E L++ +FS+FC+GK
Sbjct: 421 VPVDMVQIDVTRTWEILGEIIGDTVQESLINQLFSQFCLGK 461


>gi|199598240|ref|ZP_03211661.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus HN001]
 gi|199590843|gb|EDY98928.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus HN001]
          Length = 462

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 141/456 (30%), Positives = 238/456 (52%), Gaps = 23/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD---GRIL 61
           +TI A+ST     AISI+RLSG +       + K K     +  ++ Y   +D   G ++
Sbjct: 9   DTIAAISTPPGEGAISIVRLSGETAVATANKVFKGKNLTQVKSHTIHYGHIVDPETGDLI 68

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ ++ V  +P++FT ED  E + HGGI   N IL+ L      R+A PGEF++RAF NG
Sbjct: 69  DEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQ-LLLGEGARMAEPGEFTKRAFLNG 127

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL EAES+ DLI ++T+   ++++  + G L  L  Q   ++  + + +E ++D+ E 
Sbjct: 128 RIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHHLIKQLRQEILEVLAQVEVNIDYPEY 187

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D    ++K +L     +K  I   ++    G+++R G    I+G  N GKSSL N +  
Sbjct: 188 -DTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRPNVGKSSLLNHMLH 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVTD+ GTTRDVL   +++ G  +K+ DTAGI +T D VEK G++R+   +  ADL
Sbjct: 247 EDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVERSRQAITQADL 306

Query: 302 ILLLKE------INSKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDHLISSF 346
           ILL+ +         K+ ++   +   I +  K DL +             +     +  
Sbjct: 307 ILLVLDQSEPLTTEDKQLLAATADKKRIIVLNKQDLPARLDTTALLQLVDADEIIKTAIP 366

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDI 404
           T +G++ L  +I  +     +    + + S+ R +  L Q  + L+           +D+
Sbjct: 367 TSDGMDALDERIAKLFFGGIENSQGTVMVSNARQIGLLRQASKSLDAVMAGIHAGMPIDL 426

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  ++  A   LG+ITG    ++L+  +FS+FC+GK
Sbjct: 427 VQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462


>gi|33594714|ref|NP_882358.1| tRNA modification GTPase TrmE [Bordetella pertussis Tohama I]
 gi|46577402|sp|Q7VSR5|MNME_BORPE RecName: Full=tRNA modification GTPase mnmE
 gi|33564790|emb|CAE44118.1| putative tRNA modification GTPase [Bordetella pertussis Tohama I]
 gi|332384125|gb|AEE68972.1| tRNA modification GTPase TrmE [Bordetella pertussis CS]
          Length = 450

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 163/439 (37%), Positives = 240/439 (54%), Gaps = 17/439 (3%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESF 75
               I ++R+SGP   ++ + +  +    PR A    F   DG ++D+GL I F +P S+
Sbjct: 15  GRGGIGVVRISGPDLAELAQRLFGRPL-TPRHAHYLPFRAADGEVIDEGLAIYFRAPHSY 73

Query: 76  TGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRAFENGKIDLLEAESLA 132
           TGED  E   HGG AV+  IL    +      LR A PGEF+RRAF N ++DL +AE++A
Sbjct: 74  TGEDVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEAVA 133

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +M  +SGE S       D++ H+R  +EA LDF E E++      + 
Sbjct: 134 DLIDASSEAAARGAMASLSGEFSQRVNDLSDRIIHLRMLVEATLDFPE-EEIDFLEKYQA 192

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  L +D+ + I+Q + G I+R G  +V+ G  N GKSSL NALA  D+AIVT I G
Sbjct: 193 RPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPIAG 252

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRD +  ++ ++G  + I DTAG+R+TDD VE  GI+RT+ E+E ADLIL L+++    
Sbjct: 253 TTRDKVVQEIHIDGVPLHIVDTAGLRDTDDAVESIGIERTWKEIERADLILHLQDVTQPP 312

Query: 313 E-------ISFPKNIDFIFIGTKSDLYSTYTEEYD--HLISSFTGEGLEELINKIKSILS 363
           +          P     + +  K DL     +       IS+  G GL+ L   +   L+
Sbjct: 313 DHLDAQIVRRLPARTPVLNVFNKVDLLDAAFQGQPDSLAISARGGIGLDALRQHLLQ-LA 371

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITG 421
                      + +RHL+ L Q  ++LE+A+ + ++    LD+ AE LRLA  +L  ITG
Sbjct: 372 GWNPGAESPWLARERHLHALQQAAQHLEIATEHAREDDRVLDLFAEELRLAHEALTGITG 431

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               + LL  IFS FCIGK
Sbjct: 432 KFTSDDLLGEIFSSFCIGK 450


>gi|18311637|ref|NP_563571.1| tRNA modification GTPase TrmE [Clostridium perfringens str. 13]
 gi|110799764|ref|YP_697346.1| tRNA modification GTPase TrmE [Clostridium perfringens ATCC 13124]
 gi|168207742|ref|ZP_02633747.1| tRNA modification GTPase TrmE [Clostridium perfringens E str.
           JGS1987]
 gi|168211557|ref|ZP_02637182.1| tRNA modification GTPase TrmE [Clostridium perfringens B str. ATCC
           3626]
 gi|168214843|ref|ZP_02640468.1| tRNA modification GTPase TrmE [Clostridium perfringens CPE str.
           F4969]
 gi|169343475|ref|ZP_02864475.1| tRNA modification GTPase TrmE [Clostridium perfringens C str.
           JGS1495]
 gi|182626407|ref|ZP_02954160.1| tRNA modification GTPase TrmE [Clostridium perfringens D str.
           JGS1721]
 gi|21363002|sp|Q8XH30|MNME_CLOPE RecName: Full=tRNA modification GTPase mnmE
 gi|123344426|sp|Q0TLZ4|MNME_CLOP1 RecName: Full=tRNA modification GTPase mnmE
 gi|18146321|dbj|BAB82361.1| probable thiophen / furan oxidation protein [Clostridium
           perfringens str. 13]
 gi|110674411|gb|ABG83398.1| tRNA modification GTPase TrmE [Clostridium perfringens ATCC 13124]
 gi|169298427|gb|EDS80516.1| tRNA modification GTPase TrmE [Clostridium perfringens C str.
           JGS1495]
 gi|170660919|gb|EDT13602.1| tRNA modification GTPase TrmE [Clostridium perfringens E str.
           JGS1987]
 gi|170710445|gb|EDT22627.1| tRNA modification GTPase TrmE [Clostridium perfringens B str. ATCC
           3626]
 gi|170713713|gb|EDT25895.1| tRNA modification GTPase TrmE [Clostridium perfringens CPE str.
           F4969]
 gi|177908281|gb|EDT70834.1| tRNA modification GTPase TrmE [Clostridium perfringens D str.
           JGS1721]
          Length = 458

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 150/458 (32%), Positives = 253/458 (55%), Gaps = 21/458 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------PFPRKASLRYFFGL 56
            E +TI A++T      I+IIR+SG    ++   I +           P      +    
Sbjct: 2   KEFDTIAAIATALGEGGIAIIRVSGNKALEIVNKIFRGINGKDLLDIKPYTMRYGHMIDE 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +  I+D+ ++     P SFT ED+ E + HGGI   N +L+ + K    RLA PGEF++R
Sbjct: 62  NNEIIDEVIVSFMKGPRSFTAEDTVEINCHGGIVATNKVLQNVIKA-GARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ D+I+++TE+  + +M    G LS+       +   I + IE  +
Sbjct: 121 AFLNGRIDLSQAEAVMDIITAKTELSMKSAMTQSQGRLSTEINNLRKEALDILALIEYAV 180

Query: 177 DFSEEEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           DF+E+++  + +   +V  D++ L+  +++ I     G++IR+G  +VI+G  N GKSSL
Sbjct: 181 DFTEDDEEPDETIPVKVKEDVITLRGKVNNLIDTADEGKLIRDGLSMVIVGKPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  +  AIVTDI GTTRDV+   ++L+G  V++ DTAGIRET+D+VEK G++++  +
Sbjct: 241 LNALLNEKRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAGIRETEDVVEKIGVEKSKEK 300

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD------HLI 343
           +  ADL++L+ + +       K+ I + K+  +I +  K DL    + E          +
Sbjct: 301 INEADLVILMLDTSRELDEEDKEIIDYIKDRKYIVLLNKVDLDRKLSSEIVDNLENKIEL 360

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-L 402
           S+ TG G+++L +KIK +  N        + ++ RH   L +    L+ A     +   L
Sbjct: 361 SAKTGFGIDDLKSKIKDLFFNGSIDAESVMVTNTRHKEALYRASENLDGALNGLNNNEFL 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+++  +  A  +LG+ITG    E L++ IF++FC GK
Sbjct: 421 DLVSIYVTSALRALGEITGAELEEDLVNKIFAEFCCGK 458


>gi|254804213|ref|YP_003082434.1| putative tRNA modification GTPase [Neisseria meningitidis alpha14]
 gi|254667755|emb|CBA03677.1| putative tRNA modification GTPase [Neisseria meningitidis alpha14]
          Length = 448

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 165/453 (36%), Positives = 252/453 (55%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCG-KTPKPRTATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGVNDKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +      +  +      +  RH+  L      L +A+L      ++++AE
Sbjct: 358 GDGLDALKRTLLREAGWQ-GESEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELLAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|309378889|emb|CBX22476.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 448

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 165/453 (36%), Positives = 251/453 (55%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCG-KTPKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGVNDKTRAILDALPSELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +      +  +      +  RH+  L      L +A+L      +++ AE
Sbjct: 358 GDGLDALKRTLLREAGWQ-GESEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELFAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|121635645|ref|YP_975890.1| tRNA modification GTPase TrmE [Neisseria meningitidis FAM18]
 gi|205415783|sp|A1KW66|MNME_NEIMF RecName: Full=tRNA modification GTPase mnmE
 gi|120867351|emb|CAM11122.1| probable thiophene and furan oxidation protein [Neisseria
           meningitidis FAM18]
 gi|325131396|gb|EGC54105.1| tRNA modification GTPase TrmE [Neisseria meningitidis M6190]
 gi|325135580|gb|EGC58198.1| tRNA modification GTPase TrmE [Neisseria meningitidis M0579]
 gi|325137477|gb|EGC60063.1| tRNA modification GTPase TrmE [Neisseria meningitidis ES14902]
 gi|325141474|gb|EGC63948.1| tRNA modification GTPase TrmE [Neisseria meningitidis 961-5945]
 gi|325204937|gb|ADZ00391.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240355]
 gi|325207354|gb|ADZ02806.1| tRNA modification GTPase TrmE [Neisseria meningitidis NZ-05/33]
          Length = 448

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/453 (36%), Positives = 251/453 (55%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + E +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCG-KTPKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGVNDKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +      +  +      +  RH+  L      L +A+L      +++ AE
Sbjct: 358 GDGLDALKRTLLREAGWQ-GEGEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELFAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|297585588|ref|YP_003701368.1| tRNA modification GTPase TrmE [Bacillus selenitireducens MLS10]
 gi|297144045|gb|ADI00803.1| tRNA modification GTPase TrmE [Bacillus selenitireducens MLS10]
          Length = 458

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 148/457 (32%), Positives = 248/457 (54%), Gaps = 24/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           +TI A+ST     AI I+R+SGP   ++ + + K   P    AS    +G      DG+I
Sbjct: 4   DTISAISTPMGEGAIGIVRISGPKAVELADRLYKGAVPLQEVASHTINYGHLINPEDGQI 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P+++T ED  E + HGG+  VN +L+ L      RLA PGEF++RAF N
Sbjct: 64  IEEVMVSVLRAPKTYTKEDMIEVNCHGGLTSVNRVLQ-LILNEGARLAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T+    ++M+ + G+LS+        L    + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDLIQAKTDRAMNVAMKQVEGKLSNRIQTLRQALLETVASVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D +  +   +     ++K +I   ++  + G+I+R G   VI+G  N GKSSL N+L 
Sbjct: 183 Y-DAEEVTLDLLREKSTYVKQEIDRLLTTAEQGKILREGLSTVIVGRPNVGKSSLLNSLV 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+IPGTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   + +A+
Sbjct: 242 HENKAIVTEIPGTTRDVIEEYVNIRGVPLKLLDTAGIRETEDVVERLGVERSRQVMIDAE 301

Query: 301 LILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHLISS 345
           LIL +   N       ++     K+ D I I  K DL              +      S 
Sbjct: 302 LILFVVNYNEPLTDSDRELFELVKDQDTIVIVNKRDLDGQIDMKEVNQLAGQHPVVTTSL 361

Query: 346 FTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
              EG++EL   I+ +           S  S+ RH+  L+Q  R ++ A +  E    +D
Sbjct: 362 LKDEGVDELEEAIRDLFFEGDLDSGDLSYVSNSRHIALLNQAKRSIDEALMAVETGMPVD 421

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++  A   LG++ G    E L+D +FS+FC+GK
Sbjct: 422 MVQIDITKAWELLGEVIGDSVHESLIDQLFSQFCLGK 458


>gi|295707338|ref|YP_003600413.1| tRNA modification GTPase TrmE [Bacillus megaterium DSM 319]
 gi|294804997|gb|ADF42063.1| tRNA modification GTPase TrmE [Bacillus megaterium DSM 319]
          Length = 462

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 151/461 (32%), Positives = 244/461 (52%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL----- 56
           + +TI A+ST     AI+I+RLSG     + + I K    K     AS    +G      
Sbjct: 3   DFDTIAAISTPMGEGAIAIVRLSGEEAITIADRIFKSVSNKRLTDVASHTIHYGHIVDPK 62

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +++++ +L +   P++FT ED  E + HGGI  VN +L+ L      RLA PGEF++R
Sbjct: 63  TEQVVEEVMLSIMKGPKTFTREDIIEINCHGGIVSVNRVLQ-LVIANGARLAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++
Sbjct: 122 AFLNGRVDLSQAEAVMDLIRAKTDKAMNMAIGQMEGRLSKLVRHLRQEILETLAHVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  + + ++     ++ +I   +     G+I+R G   VI+G  N GKSSL 
Sbjct: 182 DYPEYDDVEEMTHQVLIEKASNVRQEIDKLLQTSHQGKILREGLATVIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +   AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 242 NSLVQDAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQYL 301

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE---------YDH 341
           + ADLILL+   N       KK     K +D I I  K+DL      E            
Sbjct: 302 KEADLILLVLNFNEELTDEDKKLFEAVKGMDVIVIVNKTDLEQKINLEEVQQFAGDHPIV 361

Query: 342 LISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKD 399
             S    +G+++L   I ++      +    +  S+ RH+  L+Q    ++ A    E  
Sbjct: 362 TTSLLQEQGVDQLEEAIAALFFGGTIESQDLTYLSNTRHIALLTQARGAIDEAITGIESG 421

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DI+  +L      LG+I G    E L+D +FS+FC+GK
Sbjct: 422 VPIDIVQIDLTRTWELLGEIIGDAVHESLIDQLFSQFCLGK 462


>gi|294789735|ref|ZP_06754966.1| tRNA modification GTPase TrmE [Simonsiella muelleri ATCC 29453]
 gi|294482301|gb|EFG29997.1| tRNA modification GTPase TrmE [Simonsiella muelleri ATCC 29453]
          Length = 457

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/459 (36%), Positives = 253/459 (55%), Gaps = 24/459 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
                TI A++T +    + +IRLSG       + I   K P PR A    F    G+ +
Sbjct: 3   TTHSPTIAAIATASGRGGVGVIRLSGKDLLPFVQRITGGKIPKPRTALYTDFLDAHGKTI 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D GLL+ F +P SFTGED  E   HGG  V+  +L+   ++   R+A  GEF++RAF N 
Sbjct: 63  DNGLLLYFAAPASFTGEDVIELQGHGGQIVLQMLLQRCLEL-GARIAEAGEFTKRAFLNN 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           KIDL +AES+ADLI + ++   R+++  + GE S+   Q ++ L  +R  +EA LDF E 
Sbjct: 122 KIDLAQAESVADLIDASSQQAARMAIRSLKGEFSNQIHQLVEDLITLRMLVEATLDFPE- 180

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+    S +    +  L+N ++  ++  + G I+R G  +V++G  N GKSSL NALA 
Sbjct: 181 EDIDFLQSADAKGKLRALQNQLAHILTNAQQGAILREGMTVVLVGAPNVGKSSLLNALAG 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            DVAIVTDI GTTRD +   + L+G  + + DTAG+R+T+DIVEK GI+R+   V+NAD+
Sbjct: 241 DDVAIVTDIAGTTRDTVREQITLDGIPIHMIDTAGLRQTNDIVEKIGIERSEKAVQNADI 300

Query: 302 ILLLKEIN-----SKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYD-------------H 341
            L+L + +     + +EI    P+N+  I I  K DL +   E  D              
Sbjct: 301 ALILIDPDNGVNETTREILFRLPENLKRIEIQNKIDLRNEQPERVDNLSGSLKSGADTLI 360

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            +S+ TG GL+ L   + + +  +  +      +  RHL  L      L +A+       
Sbjct: 361 KLSAKTGAGLDLLKQALLAQIGWQ-GESEGLFLARTRHLNALETAQFELNLAADCGHHQ- 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++++AE+LRLA ++  +ITG    + LL +IFS+FCIGK
Sbjct: 419 IELLAEHLRLAQMACSEITGEFTADDLLGVIFSRFCIGK 457


>gi|15677815|ref|NP_274979.1| tRNA modification GTPase TrmE [Neisseria meningitidis MC58]
 gi|14195279|sp|Q9JXL4|MNME_NEIMB RecName: Full=tRNA modification GTPase mnmE
 gi|7227248|gb|AAF42314.1| thiophene and furan oxidation protein ThdF [Neisseria meningitidis
           MC58]
 gi|316985629|gb|EFV64576.1| tRNA modification GTPase TrmE [Neisseria meningitidis H44/76]
 gi|325139307|gb|EGC61848.1| tRNA modification GTPase TrmE [Neisseria meningitidis CU385]
 gi|325143695|gb|EGC66014.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240013]
 gi|325201035|gb|ADY96490.1| tRNA modification GTPase TrmE [Neisseria meningitidis H44/76]
 gi|325206892|gb|ADZ02345.1| tRNA modification GTPase TrmE [Neisseria meningitidis M04-240196]
          Length = 448

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 163/453 (35%), Positives = 248/453 (54%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCG-KTPKPRTATYADFTDTDGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +              + P  +  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +      +  +      +  RH+  L      L +A+L      +++ AE
Sbjct: 358 GDGLDALKRTLLREAGWQ-GESEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELFAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|152977683|ref|YP_001377200.1| tRNA modification GTPase TrmE [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189036194|sp|A7GVP7|MNME_BACCN RecName: Full=tRNA modification GTPase mnmE
 gi|152026435|gb|ABS24205.1| tRNA modification GTPase TrmE [Bacillus cytotoxicus NVH 391-98]
          Length = 458

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 147/458 (32%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +    I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGEDAIEKVNRIFKGKDLTAVSSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P++FT ED  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPKTFTREDIVEVNCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G+   ++    + +E ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETLAHVEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  + + ++     ++N+I   +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHRILIEKATHVQNEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVEQIGVERSKEMMSQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTY---------TEEYDHLIS 344
           DL+L++        N  +E+    +  DFI I  K+DL             +E+     S
Sbjct: 301 DLVLIVVNYSEPLTNEDEELFRAVQGKDFIVIVNKTDLPQKIEMERVTELASEKRVITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               +G++EL   I  +      +    +  S+ RH+  L+Q  + + +  +  E    +
Sbjct: 361 LIEEKGVDELEKAIADLFFEGTIESADMTYVSNARHIGLLTQARKTIGDAIAAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|253681274|ref|ZP_04862072.1| tRNA modification GTPase TrmE [Clostridium botulinum D str. 1873]
 gi|253562512|gb|EES91963.1| tRNA modification GTPase TrmE [Clostridium botulinum D str. 1873]
          Length = 459

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 168/460 (36%), Positives = 254/460 (55%), Gaps = 24/460 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD- 57
            E +TI A++T    S +SIIR+SG     +   I   K           S+RY F +D 
Sbjct: 2   KEFDTIAAIATNLGESGVSIIRVSGEKALSIVSKIFVGKNDRKLDDITTYSMRYGFIIDK 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G  LD+ ++     P SFT ED  E + HGG+ V   ILEE+ K    RLA+PGEF++
Sbjct: 62  VSGEKLDEVIVSYMKGPRSFTAEDVVEINCHGGVIVTKRILEEVIKS-GARLASPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI+++TE+  + ++E   G+LS       DKL  I + IEA 
Sbjct: 121 RAFLNGRIDLSQAEAVIDLINAKTELSAKSALEQSEGKLSKEISHLRDKLLEIIAHIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D++  +S++   D+  +  +I   +S    G+I+R G   VI+G  N GKSS+
Sbjct: 181 VDYPE-DDLEEVTSEKGKEDVDKIITEIDKLLSSANEGKILREGLNTVIVGKPNVGKSSI 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  +  AIVTDIPGTTRDV+   + +EG  +KI DTAGIRETDDIVEK G++++  +
Sbjct: 240 LNALLMETRAIVTDIPGTTRDVIEEYMSIEGIPIKIVDTAGIRETDDIVEKIGVEKSREK 299

Query: 296 VENADLILLL------KEINSKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDH 341
           + N+DL +L+       +   K+ I F K+  +I +  K DL         +    +Y  
Sbjct: 300 ILNSDLTVLVLDSSRELDAEDKEIIDFIKDKKYIVLLNKIDLDTKLDKGSLNKLNSDYII 359

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
            IS+ TG+GL+     IK +  +        + ++ RH   L +    L       E   
Sbjct: 360 DISAKTGKGLDRFKEVIKELFFSGEVTSKDVMITNTRHKEALIRAKNSLIAGKEALENTF 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D+ + ++R A  +LG+I G    E ++D IFSKFC+GK
Sbjct: 420 AIDLASIDIRDAWKNLGEINGDTVEEDMIDKIFSKFCLGK 459


>gi|315659998|ref|ZP_07912856.1| tRNA modification GTPase TrmE [Staphylococcus lugdunensis M23590]
 gi|315494899|gb|EFU83236.1| tRNA modification GTPase TrmE [Staphylococcus lugdunensis M23590]
          Length = 471

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 147/459 (32%), Positives = 246/459 (53%), Gaps = 23/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           + +TI ++ST     AI I+RLSGP   ++ + + K K       S    +G        
Sbjct: 14  DFDTITSISTPMGEGAIGIVRLSGPQAIEIGDKLYKGKYKLAEVDSHTINYGHIVDPETN 73

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++++ ++ V  +P++FT ED  E + HGGI  +N +LE L      R+A PGE+S+RAF
Sbjct: 74  EVVEEVMISVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTHGARMAEPGEYSKRAF 132

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+
Sbjct: 133 LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRKSILEILAQVEVNIDY 192

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV++ +++ +L     +K +I   +  G  G+I+R G   VI+G  N GKSS+ N 
Sbjct: 193 PEYDDVEDATTEFLLEQSKNIKAEIDKLLETGAQGKIMREGLSTVIVGKPNVGKSSMLNN 252

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  
Sbjct: 253 LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSQ 312

Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           ADLIL +   N       +      KN D I I  K+DL      E    +         
Sbjct: 313 ADLILFVLNYNEPLTKEDRTLFEVIKNEDVIVIVNKTDLAQQLNIEEVQEMIGNKPLIQT 372

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S    EG++EL  +I+ +      +    +  S+ RH+  L Q    ++ A    E    
Sbjct: 373 SMLKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHIALLKQARHAIQDAIDAAESGVP 432

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L++ +FS+FC+GK
Sbjct: 433 MDMVQIDLTRTWEILGEIIGESASDELINQLFSQFCLGK 471


>gi|226942147|ref|YP_002797221.1| tRNA modification GTPase TrmE [Laribacter hongkongensis HLHK9]
 gi|254811488|sp|C1D6H7|MNME_LARHH RecName: Full=tRNA modification GTPase mnmE
 gi|226717074|gb|ACO76212.1| tRNA modification GTPase trmE [Laribacter hongkongensis HLHK9]
          Length = 450

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 157/439 (35%), Positives = 245/439 (55%), Gaps = 16/439 (3%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPES 74
                + +IRLSG +   +   +   ++P PR A    F   DG+ +D GLL+ FP+P S
Sbjct: 15  PGRGGVGVIRLSGRNLLPLAGQLSGGRQPRPRHALYTDFVASDGQAIDSGLLLYFPAPHS 74

Query: 75  FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134
           FTGED  E   HGG  ++  +L    ++   RLA PGEF++RAF N K+DL+EAES+ADL
Sbjct: 75  FTGEDVLELQGHGGPVILRMLLARCLEL-GARLAEPGEFTKRAFLNDKMDLVEAESVADL 133

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           I +++E   R +++ + G  S+   + +D L  +R   EA LDF EE+DV+     + L 
Sbjct: 134 IDAQSETAARSALKSLKGAFSAEIHRLVDTLIDLRMLTEATLDFPEEDDVEWLEKADALG 193

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +  ++  +++ ++  + G I+R G  +V++G  N GKSSL NALA  ++AIVTDI GTT
Sbjct: 194 RLAAVRRQLATVLATARQGAILREGMHVVLVGQPNVGKSSLMNALAGDEIAIVTDIAGTT 253

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------- 307
           RD +   + L+G  + I DTAG+RET D VE+ GI+RT+  VE AD++LLL +       
Sbjct: 254 RDTVREQIVLDGVPLHIIDTAGLRETTDTVERIGIERTWQAVERADVVLLLVDGRDGVTA 313

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---SSFTGEGLEELINKIKSI 361
            ++      P+ +  +F+  K DL       +EE  H++   S+  G G++ L   +   
Sbjct: 314 ADAAILARLPERLPRVFVHNKIDLTGETAGVSEEDGHVVVRLSARGGAGVDALRQVLLEA 373

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
           +  +  +      + +RHL  + +    LE A         ++ AE+LR A   L +ITG
Sbjct: 374 VGWQ-GESEGLFLARERHLDAIRRAEAELEAAG-QAYGLAAELFAEHLRQAQACLSEITG 431

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               + LL +IFS+FCIGK
Sbjct: 432 EFSADDLLGVIFSRFCIGK 450


>gi|33598900|ref|NP_886543.1| tRNA modification GTPase TrmE [Bordetella parapertussis 12822]
 gi|46577407|sp|Q7W2J0|MNME_BORPA RecName: Full=tRNA modification GTPase mnmE
 gi|33575030|emb|CAE39696.1| putative tRNA modification GTPase [Bordetella parapertussis]
          Length = 450

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 163/439 (37%), Positives = 241/439 (54%), Gaps = 17/439 (3%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESF 75
               I ++R+SGP   ++ + +  +    PR A    F   DG ++D+GL I F +P S+
Sbjct: 15  GRGGIGVVRISGPDLAELAQRLFGRPL-TPRHAHYLPFRAADGEVIDEGLAIYFRAPHSY 73

Query: 76  TGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRAFENGKIDLLEAESLA 132
           TGED  E   HGG AV+  IL    +      LR A PGEF+RRAF N ++DL +AE++A
Sbjct: 74  TGEDVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEAVA 133

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +M  +SGE S       D++ H+R  +EA LDF E E++      + 
Sbjct: 134 DLIDASSEAAARGAMASLSGEFSQRVNDLSDRIIHLRMLVEATLDFPE-EEIDFLEKYQA 192

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  L +D+ + I+Q + G I+R G  +V+ G  N GKSSL NALA  D+AIVT I G
Sbjct: 193 RPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPIAG 252

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRD +  ++ ++G  + I DTAG+R+TDD VE  GI+RT+ E+E ADLIL L+++    
Sbjct: 253 TTRDKVVQEIHIDGVPLHIVDTAGLRDTDDAVESIGIERTWKEIERADLILHLQDVTQPP 312

Query: 313 E-------ISFPKNIDFIFIGTKSDLYSTYTEEYD--HLISSFTGEGLEELINKIKSILS 363
           +          P     + +  K DL     +       IS+  G GL+ L  ++   L+
Sbjct: 313 DHLDAQIVRRLPARTPVLNVFNKVDLLDAAFQGQPDSLAISARGGIGLDALRQRLLQ-LA 371

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITG 421
                      + +RHL+ L Q  ++LE+A+ + ++    LD+ AE LRLA  +L  ITG
Sbjct: 372 GWNPGAESPWLARERHLHALQQAAQHLEIATEHAREDDRVLDLFAEELRLAHEALTGITG 431

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               + LL  IFS FCIGK
Sbjct: 432 KFTSDDLLGEIFSSFCIGK 450


>gi|169830197|ref|YP_001700355.1| tRNA modification GTPase trmE [Lysinibacillus sphaericus C3-41]
 gi|205415777|sp|B1HPM3|MNME_LYSSC RecName: Full=tRNA modification GTPase mnmE
 gi|168994685|gb|ACA42225.1| Probable tRNA modification GTPase trmE [Lysinibacillus sphaericus
           C3-41]
          Length = 461

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 150/461 (32%), Positives = 249/461 (54%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL----- 56
           E +TI A+ST     AI+I+RLSG     + + I K    K    K S    +G      
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDEAVAIADKIFKSPGGKSLTTKDSHTIHYGHLVDPK 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ++++ +L +   P++FT ED  E + HGG+  VN +L+ LA     RLA PGEF++R
Sbjct: 62  TNEVVEEVMLSLMRGPKTFTREDVVEINCHGGLVSVNRVLQ-LALTNGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G+LS L G     L    + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLIGDLRQALLETLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +   ++    +++++I   +     G+I+R G   VILG  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTVPVLVEKCTWVRDEIIKLLQTSSQGKILREGLSTVILGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSREAL 300

Query: 297 ENADLILLLK----EINSKKEISFP--KNIDFIFIGTKSDLYSTYT---------EEYDH 341
             ADLIL +     E+ ++ E  F   + +D+I I  K+DL              +    
Sbjct: 301 RGADLILFVLNYADELTAEDERLFETIEAMDYIVIINKTDLPQKINLARVKELAGKHRIV 360

Query: 342 LISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S    EG+ EL   I ++    + +    +  S+ RH+  L Q    +E A +  +  
Sbjct: 361 TTSLLQEEGVTELEEAIAALFFEGQIEAGDLTYVSNARHIALLHQAQATVEDAIAAAQAG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  ++      LG+I G    E L++ +FS+FC+GK
Sbjct: 421 VPVDMVQIDVTRTWELLGEIIGDTVQESLINQLFSQFCLGK 461


>gi|33603979|ref|NP_891539.1| tRNA modification GTPase TrmE [Bordetella bronchiseptica RB50]
 gi|46577412|sp|Q7WDI4|MNME_BORBR RecName: Full=tRNA modification GTPase mnmE
 gi|33568955|emb|CAE35369.1| putative tRNA modification GTPase [Bordetella bronchiseptica RB50]
          Length = 450

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 163/439 (37%), Positives = 241/439 (54%), Gaps = 17/439 (3%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESF 75
               I ++R+SGP   ++ + +  +    PR A    F   DG ++D+GL I F +P S+
Sbjct: 15  GRGGIGVVRISGPDLAELAQRLFGRPL-TPRHAHYLPFRAADGEVIDEGLAIYFRAPHSY 73

Query: 76  TGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRAFENGKIDLLEAESLA 132
           TGED  E   HGG AV+  IL    +      LR A PGEF+RRAF N ++DL +AE++A
Sbjct: 74  TGEDVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEAVA 133

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +M  +SGE S       D++ H+R  +EA LDF E E++      + 
Sbjct: 134 DLIDASSEAAARGAMTSLSGEFSQRVNDLSDRIIHLRMLVEATLDFPE-EEIDFLEKYQA 192

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  L +D+ + I+Q + G I+R G  +V+ G  N GKSSL NALA  D+AIVT I G
Sbjct: 193 RPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPIAG 252

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRD +  ++ ++G  + I DTAG+R+TDD VE  GI+RT+ E+E ADLIL L+++    
Sbjct: 253 TTRDKVVQEIHIDGVPLHIVDTAGLRDTDDAVESIGIERTWKEIERADLILHLQDVTQPP 312

Query: 313 E-------ISFPKNIDFIFIGTKSDLYSTYTEEYD--HLISSFTGEGLEELINKIKSILS 363
           +          P     + +  K DL     +       IS+  G GL+ L  ++   L+
Sbjct: 313 DHLDAQIVRRLPARTPVLNVFNKVDLLDAAFQGQPDSLAISARGGIGLDALRQRLLQ-LA 371

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITG 421
                      + +RHL+ L Q  ++LE+A+ + ++    LD+ AE LRLA  +L  ITG
Sbjct: 372 GWNPGAESPWLARERHLHALQQAAQHLEIATEHAREDDRVLDLFAEELRLAHEALTGITG 431

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               + LL  IFS FCIGK
Sbjct: 432 KFTSDDLLGEIFSSFCIGK 450


>gi|313669190|ref|YP_004049474.1| thiophene and furan oxidation protein [Neisseria lactamica ST-640]
 gi|313006652|emb|CBN88118.1| probable thiophene and furan oxidation protein [Neisseria lactamica
           020-06]
          Length = 448

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/453 (36%), Positives = 253/453 (55%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + E +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCG-KTPKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +    +N K  +   + P  +  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRMILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +      +  +      +  RH+  L      L +A+L      ++++AE
Sbjct: 358 GDGLDALKRMLLREAGWQ-GESEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELLAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|240127321|ref|ZP_04739982.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae SK-93-1035]
 gi|268685687|ref|ZP_06152549.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268625971|gb|EEZ58371.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 448

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 165/453 (36%), Positives = 252/453 (55%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCG-KTPEPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAALDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +    +N K  +   + P ++  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +    +    +      +  RH+  L      L +A+L      +++ AE
Sbjct: 358 GDGLDALKRTLL-CEAGWQGESEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELFAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|161869216|ref|YP_001598382.1| tRNA modification GTPase TrmE [Neisseria meningitidis 053442]
 gi|205415782|sp|A9M0N5|MNME_NEIM0 RecName: Full=tRNA modification GTPase mnmE
 gi|161594769|gb|ABX72429.1| thiophene and furan oxidation protein [Neisseria meningitidis
           053442]
 gi|261393317|emb|CAX50949.1| tRNA modification GTPase TrmE [Neisseria meningitidis 8013]
 gi|308390087|gb|ADO32407.1| tRNA modification GTPase TrmE [Neisseria meningitidis alpha710]
 gi|325129416|gb|EGC52248.1| tRNA modification GTPase TrmE [Neisseria meningitidis OX99.30304]
          Length = 448

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 163/453 (35%), Positives = 248/453 (54%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCG-KTPKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +              + P  +  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRAILDALPSELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +      +  +      +  RH+  L      L +A+L      +++ AE
Sbjct: 358 GDGLDALKRTLLREAGWQ-GEGEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELFAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|163851007|ref|YP_001639050.1| tRNA modification GTPase TrmE [Methylobacterium extorquens PA1]
 gi|163662612|gb|ABY29979.1| tRNA modification GTPase TrmE [Methylobacterium extorquens PA1]
          Length = 444

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/442 (37%), Positives = 259/442 (58%), Gaps = 4/442 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59
           +    +TIFA ++G   +A++++R+SGP+     + +   + P PR+ SLR     + R 
Sbjct: 5   LPDRDDTIFAPASGFGRAAVTVVRISGPAAGLTLDRLAGGR-PEPRRLSLRCLRDPESRD 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ILD+ L+   P P + TGED AE H+HGG+AV + +L  L ++P  R A  G FSRRAF 
Sbjct: 64  ILDQALVAWLPGPATATGEDMAELHLHGGLAVRSAVLRALGRVPGCRPAEAGAFSRRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL EAE +ADLI +ETE QR  ++  + G L      W +    + +  EA LDF+
Sbjct: 124 NGRIDLTEAEGIADLIDAETEAQRVQALRQIDGALGRQVAAWRETGIDLLAGAEAALDFA 183

Query: 180 EEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E DV        L+     L++ I + ++ G+ GE +R G+ +V+ G  NAGKS+L NA
Sbjct: 184 DEGDVDEAGLDAALSGRAAFLRDAIRAALADGRRGERLREGFCVVLAGAPNAGKSTLLNA 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DIPGTTRD + +  DL G  V + DTAG+R+T D +E EG+KRT   +  
Sbjct: 244 LTGRDAAIVSDIPGTTRDAIEVRCDLGGLPVVLVDTAGLRDTADAIEAEGVKRTQSRIRG 303

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           ADL+L L   + + +     ++  + + TK+DL      E    IS+ TG GL+ L++ I
Sbjct: 304 ADLVLHLVPADGETDAGRFADVPLLLVRTKTDLAPEVPGEGGLAISAVTGAGLDALLDAI 363

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           ++       +   ++ + +RH   LS+   +L+  +        +++AE+LRLA  +LG+
Sbjct: 364 QAAAQTALGQGD-ALVTRERHREALSRAAAHLDRVATASAGFPPELVAEDLRLAVRALGE 422

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           + G V VE++LD +F+ FCIGK
Sbjct: 423 VGGHVGVEEMLDRLFAGFCIGK 444


>gi|325127365|gb|EGC50299.1| tRNA modification GTPase TrmE [Neisseria meningitidis N1568]
          Length = 448

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/453 (36%), Positives = 248/453 (54%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + E +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCG-KTPKPRTATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +              + P  +  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +      +  +      +  RH+  L      L +A+L      +++ AE
Sbjct: 358 GDGLDALKRTLLREAGWQ-GEGEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELFAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|259502137|ref|ZP_05745039.1| tRNA modification GTPase TrmE [Lactobacillus antri DSM 16041]
 gi|259169950|gb|EEW54445.1| tRNA modification GTPase TrmE [Lactobacillus antri DSM 16041]
          Length = 463

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 141/462 (30%), Positives = 242/462 (52%), Gaps = 24/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
           N E +TI A+ST      ISIIR+SGP    V + + +  K   R AS    +G      
Sbjct: 3   NSENDTIAAISTPVGEGGISIIRISGPDAVAVAKQLYRGSKDLARVASHTINYGHIVDPE 62

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G  +D+ ++ V  +P ++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 63  TGTEVDEVMVSVMRAPHTYTCEDVIEINCHGGLLATNRILQ-LVLSYGARMAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL ++E++ DLI ++T+   ++++  + G+LS L  +    +  + + +E ++
Sbjct: 122 AFLNGRIDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRRLRKDILDVLAQVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  ++K +    + ++  I + +   K G+++R G    I+G  N GKSSL 
Sbjct: 182 DYPEYDAVEEMTTKMLKEKAVDIRQRIQALLKTAKQGKVLREGLATAIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTD+ GTTRDV+   ++++G  +K+ DTAGIR+TDD VEK G++R+   +
Sbjct: 242 NTLLHEDKAIVTDVAGTTRDVIEEYVNVDGVPLKLIDTAGIRDTDDTVEKIGVERSKKAL 301

Query: 297 E---------------NADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           +                A+   LL     K+ I      D       ++L      +   
Sbjct: 302 DAADLILLLIDSSAPLTAEDRELLTVTQGKQRIVILNKTDLPRQVDLAELKQLTAGDTVI 361

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYL-EMASLNEK 398
             S    EG+++L  +I  +  N+  +   S  + ++ RH+  L Q    L ++    + 
Sbjct: 362 ETSIVNHEGMDQLGQRISKMFFNEGIESSQSNVMVTNARHIGLLHQANAALNDVLKGIDD 421

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 422 GMPVDLVQIDMTRCWDLLGEITGDSYQDELLDQLFSQFCLGK 463


>gi|300115604|ref|YP_003762179.1| tRNA modification GTPase TrmE [Nitrosococcus watsonii C-113]
 gi|299541541|gb|ADJ29858.1| tRNA modification GTPase TrmE [Nitrosococcus watsonii C-113]
          Length = 459

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/451 (35%), Positives = 251/451 (55%), Gaps = 18/451 (3%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A++T     ++ I+R+SGP C QV + +  +  P PR A   YF   DG ++D+
Sbjct: 13  KSDTIAAIATPPGQGSVGIVRVSGPLCRQVAKQVTGR-VPLPRYALFGYFRNRDGELIDQ 71

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP P SFTGED  E   HG  AV++ +L  + ++   RLA PGEFS RAF N KI
Sbjct: 72  GVALYFPGPHSFTGEDVLELQGHGSPAVMDWLLSRVLQL-GARLARPGEFSERAFLNNKI 130

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI S ++   R ++  + GE S+      ++LT +R  +EA++DFS+ ED
Sbjct: 131 DLAQAEAIADLIESASDQAARSALRSLHGEFSAQIRDLREQLTELRCVVEANIDFSD-ED 189

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +       V   +  +++ + S     + G ++R G K+V+ G  N GKSSL N LA  +
Sbjct: 190 IDFIERGAVAERLKGIQSTLQSIHRSARQGALLREGIKVVLAGRPNVGKSSLHNRLAGFE 249

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTD+PGTTRD+L   + ++G  + +SDTAG+ ++ D +E+EG++RT  E+ +AD +L
Sbjct: 250 AAIVTDVPGTTRDLLREHVTIDGLPIHLSDTAGLHDSRDTIEQEGMRRTREELTHADHVL 309

Query: 304 LLKE-------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEG 350
           L+ +       +        P N+ +  I  K DL       ++         S+ TG G
Sbjct: 310 LVADDQSGLTEVEQAILDELPDNVTYTLIFNKVDLSGASVGRWEDPQGIALRLSALTGAG 369

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDIIAENL 409
           ++ L  ++K       ++      + +RHL  L +    + +A    ++ G  +++AE L
Sbjct: 370 MDLLRQRLKECAGFDGER-EGYFSARRRHLEALQRAGAAVVVARKILREKGAEEMLAEEL 428

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R A  SL +ITG    + LL  IFS FCIGK
Sbjct: 429 RQAQNSLAEITGEYRADDLLGEIFSTFCIGK 459


>gi|296313895|ref|ZP_06863836.1| tRNA modification GTPase TrmE [Neisseria polysaccharea ATCC 43768]
 gi|296839424|gb|EFH23362.1| tRNA modification GTPase TrmE [Neisseria polysaccharea ATCC 43768]
          Length = 448

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/453 (36%), Positives = 252/453 (55%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + E +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCG-KTPKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +    +N K      + P  +  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGVNDKTRAILDALPSELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +      +  +      +  RH+  L      L +A+L      ++++AE
Sbjct: 358 GDGLDALKRTLLREAGWQ-GESEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELLAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|170718319|ref|YP_001785331.1| tRNA modification GTPase TrmE [Haemophilus somnus 2336]
 gi|205829154|sp|B0URU2|MNME_HAES2 RecName: Full=tRNA modification GTPase mnmE
 gi|168826448|gb|ACA31819.1| tRNA modification GTPase TrmE [Haemophilus somnus 2336]
          Length = 452

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 156/453 (34%), Positives = 253/453 (55%), Gaps = 20/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A +T      + I+R+SGP   QV E +   K   PR A+   F   DG +LD+G
Sbjct: 3   RDTIVAQATPIGRGGVGILRVSGPLAQQVAEQVLG-KTLTPRMANYLPFKDSDGSVLDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGE+  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 62  IALYFKAPNSFTGENVLELQGHGGQIVMDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF + E++
Sbjct: 122 LAQAEAIADLIEASSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPD-EEI 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   ++   ++ K G I+R G K+VI G  NAGKSSL N LA ++ 
Sbjct: 181 DFLADGKIETHLREIIAKLAKVKNEAKQGAILREGMKVVIAGRPNAGKSSLLNTLAGREA 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+E AD ILL
Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVEKIGIRRAWDEIEQADRILL 300

Query: 305 LKE----------INSKKEISFPKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFTG 348
           + +          + S+     P +I    +  K+DL   +    E +      +S+ T 
Sbjct: 301 ILDSTENQVELDLVRSEFMAKLPPHIPLTIVRNKADLSGEAEVLNEQNGLTVISLSAKTQ 360

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAE 407
           +G++ L   +K  +  +         + +RHL  L Q   +L+   +   +    +++AE
Sbjct: 361 KGVDLLRQHLKQSMGYQVCT-EGGFLARRRHLEALEQADIHLQAGLIQLTEFYAGELVAE 419

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 420 ELRIVQHHLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|163783084|ref|ZP_02178079.1| tRNA modification GTPase TrmE [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881764|gb|EDP75273.1| tRNA modification GTPase TrmE [Hydrogenivirga sp. 128-5-R1-1]
          Length = 448

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 160/450 (35%), Positives = 248/450 (55%), Gaps = 17/450 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FPRKASLRYFFGLDGRILDK 63
           K+ I A++T    SAI ++RL+G           + K    PR A         G  +D+
Sbjct: 2   KDPIVAIATPFGESAIGVVRLTGKDVLPTVLRYFRTKSEVKPRYAHYGTLVDERGEPIDE 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+L+ + +P S+TGED  E  +HG   ++  +LE L      RLA PGEF+RRAF NGK+
Sbjct: 62  GILVYYRAPNSYTGEDMVELSLHGNPLILKRVLE-LFLSAGCRLAEPGEFTRRAFLNGKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++A+LIS++TE+ RR S+  + GELS       + L  + ++IEAD++FSE ED
Sbjct: 121 DLAQAEAVAELISAKTELARRASLRQLRGELSRYVNSLRESLLELSAYIEADIEFSE-ED 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   + ++V+  +  +   I   +S  K G+++R G K+ I+G  N GKSSLFNAL K+D
Sbjct: 180 IPTLTKEQVIGMVDRVLEGIDQLLSTAKTGKLLREGIKLAIVGRPNVGKSSLFNALLKED 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRD +   L+L G  V++ DTAGIRE++D VE+ G++R+  ++E AD++L
Sbjct: 240 RAIVTDIEGTTRDYIEESLNLRGIPVRLIDTAGIRESEDPVERIGVERSMEKIEEADVVL 299

Query: 304 LLKEINS--KKEISFP----KNIDFIFIGTKSDLYSTYTEEY-----DHLISSFTGEGLE 352
            + + +   ++E S       + D + +  K D       E         +S+  G GL+
Sbjct: 300 FVVDASEELREEDSLIYEKLGDKDIVVVFNKIDRGEVVPLEKFQGHSIIKVSALKGYGLK 359

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL--NEKDCGLDIIAENLR 410
           +L  +I             +I    RH   L +    L        ++D   +I   ++R
Sbjct: 360 DLEEEILKKA-GAVAHEGLNIYVSVRHEELLKKARETLSKFRDRYAKEDISPEIAMLDVR 418

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AS  LG+I G +  E++L  IFS+FCIGK
Sbjct: 419 EASDFLGEIVGHITTEEVLGSIFSRFCIGK 448


>gi|296876607|ref|ZP_06900657.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis ATCC
           15912]
 gi|296432426|gb|EFH18223.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis ATCC
           15912]
          Length = 466

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 141/457 (30%), Positives = 251/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 11  ITKEFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKDLTSVASHTLNYGHIVDPD 70

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ + +    RLA PGEF++R
Sbjct: 71  KNEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLVIR-EGARLAEPGEFTKR 129

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E ++
Sbjct: 130 AFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVNI 189

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +++ +   + G+I+R G    I+G  N GKSSL 
Sbjct: 190 DYPEYDDVEEATTEIIREKTSEFEALLTNLLKTARRGKILREGISTAIIGRPNVGKSSLL 249

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   +
Sbjct: 250 NNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVEQIGVERSKKAL 309

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSF 346
           + ADL+LL+   +       ++ +   ++ + I +  K DL          E    IS  
Sbjct: 310 KEADLVLLVLNASEPLTDQDRQLLEISQDSNRIILLNKVDLPEKIEIDQLPEDHIKISVL 369

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLD 403
             + ++++ ++I ++        +   +  S+ RH+  + + V  L+  +        +D
Sbjct: 370 KNQNIDQIEDRINALFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLALGMPVD 429

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 430 LLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 466


>gi|325133445|gb|EGC56109.1| tRNA modification GTPase TrmE [Neisseria meningitidis M13399]
          Length = 448

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 164/453 (36%), Positives = 248/453 (54%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + E +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCG-KTPKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +              + P  +  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +      +  +      +  RH+  L      L +A+L      +++ AE
Sbjct: 358 GDGLDALKRTLLREAGWQ-GESEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELFAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|196232691|ref|ZP_03131542.1| tRNA modification GTPase TrmE [Chthoniobacter flavus Ellin428]
 gi|196223151|gb|EDY17670.1| tRNA modification GTPase TrmE [Chthoniobacter flavus Ellin428]
          Length = 445

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 150/444 (33%), Positives = 235/444 (52%), Gaps = 12/444 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDGRI 60
            +TI A+ST     AI+++RLSGP    +   I + KKP     PR       +    R 
Sbjct: 6   NDTIAAISTPFGEGAIALLRLSGPRAAGIAGAIFRGKKPVTELVPRVQHYGAVYDAKKRK 65

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD  LL VF  P S+TGED  E   HGG+ V   IL  L K    R A PGEF++RA+ +
Sbjct: 66  LDDVLLTVFRGPHSYTGEDVVEISCHGGVLVSRRILGALLKS-GARSAEPGEFTQRAYLH 124

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ DLIS++T++  R + E + G L        + +  + + +EA +DF +
Sbjct: 125 HKMDLTQAEAVMDLISAQTDLAMRAATEQLEGRLGECIRALRETIIELLANVEAYIDFPD 184

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+   S  ++L  +   + D+ + ++    G+++R G + VI G  N GKSSL N L 
Sbjct: 185 -EDIDPDSGVDLLAKMDAARADLEALLATADRGKVLREGVRTVIYGAPNVGKSSLLNLLL 243

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIV+  PGTTRDV+   ++L G  +++ DTAG+R +DD +E+EG+KRT+ E+  AD
Sbjct: 244 GHERAIVSPRPGTTRDVIEETINLGGLPIRLIDTAGVRVSDDELEQEGMKRTWQELARAD 303

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLEELINKI 358
           L L + + +     S   N   + +  K+DL  +  + +     IS    +G++ L   I
Sbjct: 304 LALHVFDASEPP--SEEANGTVLTVLNKTDLGEHPGWRKIDAVRISCLKNKGIDALTKAI 361

Query: 359 -KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAENLRLASVSL 416
              I         +S+  + RH   L +   ++E A      +   + +AE LR A  ++
Sbjct: 362 VARIAGGSTTHRDWSLAINARHADCLGRARGFIEAARGALTGEMSPEFVAEELRGALDAV 421

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G + G  D E++L  IFS FCIGK
Sbjct: 422 GDVVGKADSEEILGKIFSTFCIGK 445


>gi|258509933|ref|YP_003172684.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus GG]
 gi|257149860|emb|CAR88833.1| tRNA modification GTPase MnmE [Lactobacillus rhamnosus GG]
 gi|259651193|dbj|BAI43355.1| tRNA modification GTPase [Lactobacillus rhamnosus GG]
          Length = 462

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 141/456 (30%), Positives = 238/456 (52%), Gaps = 23/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD---GRIL 61
           +TI A+ST     AISI+RLSG +       + K K     +  ++ Y   +D   G ++
Sbjct: 9   DTIAAISTPPGEGAISIVRLSGETAVATANKVFKGKDLTQVKSHTIHYGHIVDPETGDLI 68

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ ++ V  +P++FT ED  E + HGGI   N IL+ L      R+A PGEF++RAF NG
Sbjct: 69  DEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQ-LLLGEGARMAEPGEFTKRAFLNG 127

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL EAES+ DLI ++T+   ++++  + G L  L  Q   ++  + + +E ++D+ E 
Sbjct: 128 RIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHHLIKQLRQEILEVLAQVEVNIDYPEY 187

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D    ++K +L     +K  I   ++    G+++R G    I+G  N GKSSL N +  
Sbjct: 188 -DTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRPNVGKSSLLNHMLH 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVTD+ GTTRDVL   +++ G  +K+ DTAGI +T D VEK G++R+   +  ADL
Sbjct: 247 EDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVERSRQAITQADL 306

Query: 302 ILLLKE------INSKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDHLISSF 346
           ILL+ +         K+ ++   +   I +  K DL +             +     +  
Sbjct: 307 ILLVLDQSEPLTTEDKQLLAATADKKRIIVLNKQDLPARLDTAALLQLVDADEIIKTAIP 366

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDI 404
           T +G++ L  +I  +     +    + + S+ R +  L Q  + L+           +D+
Sbjct: 367 TSDGMDALDERIAKLFFGGIENSQGTVMVSNARQIGLLRQASKSLDAVMAGIHAGMPIDL 426

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  ++  A   LG+ITG    ++L+  +FS+FC+GK
Sbjct: 427 VQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462


>gi|229824620|ref|ZP_04450689.1| hypothetical protein GCWU000282_01967 [Catonella morbi ATCC 51271]
 gi|229785991|gb|EEP22105.1| hypothetical protein GCWU000282_01967 [Catonella morbi ATCC 51271]
          Length = 460

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 148/461 (32%), Positives = 243/461 (52%), Gaps = 25/461 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
           + ++TI A+ST     AI ++RLSGP    +   +   +K   + AS    +G       
Sbjct: 2   YTQDTIVAISTALGEGAIGLVRLSGPEAIAIANRLF-PEKDLSQVASHTIHYGHIQDPQS 60

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G++LD+ +  V  +P S+T ED  E + HGGI  +  IL         RLA PGEF++RA
Sbjct: 61  GQVLDEVMTSVMKAPRSYTTEDVVEINGHGGIVAIQSILNACL-SQGARLAEPGEFTQRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLIS++T   +  +M  + G L     Q  D + +  + +E  +D
Sbjct: 120 FLNGRIDLSQAEAIMDLISAKTNRAKDAAMSQLQGSLKHKIRQLRDTMLNTLAQVEVTID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  S +++ +    +++++ + + Q   G++ R G K  I+G  N GKSSL N
Sbjct: 180 YPEYDDVEELSLQQLASTAELVQSEVRAILRQATQGKLFREGIKTAIIGRPNVGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIVTDI GTTRD +   + ++G  + I DTAGIR TD++VE+ G++++   +E
Sbjct: 240 YLIGEDKAIVTDIAGTTRDTIEEYISIKGVPLHIIDTAGIRHTDEVVEQIGVEKSRAMIE 299

Query: 298 NADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE----------YDH 341
           +ADLILL+       +    + +   +N   I +  K DL + ++ E             
Sbjct: 300 SADLILLILNQAQALDPMDLELLELTQNKARIILLNKQDLPNQWSIEDLAGHLQDDSDII 359

Query: 342 LISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKD 399
             S  T +GL  L + I    LS   +    +   + RH + L+Q +  L E+       
Sbjct: 360 KTSVLTEDGLTALEDAISARFLSGNLQSTDLNYLLNSRHTHLLNQALASLDEVIQSCAMS 419

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D+I  +   A  +LG+ITG    ++LL  +FS+FC+GK
Sbjct: 420 LPVDLIQIDYTRAWDALGEITGDSVQDELLTKLFSQFCLGK 460


>gi|315222529|ref|ZP_07864418.1| tRNA modification GTPase TrmE [Streptococcus anginosus F0211]
 gi|315188215|gb|EFU21941.1| tRNA modification GTPase TrmE [Streptococcus anginosus F0211]
          Length = 457

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 251/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG + F + + I K K        +L Y   +D  
Sbjct: 2   ITKEFDTIAAISTPLGEGAIGIVRLSGTNSFAIAQKIFKGKDLSTVASHTLNYGHIIDPE 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  KNEILDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +       +  ++  +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTKLLREKTAEFEKLLTQLLKTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIR+TDDIVE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSF 346
           ++ADL+LL+   +       +K +   ++ + I +  K+DL          +    IS  
Sbjct: 301 QDADLVLLVLNASEPLTEQDRKLLEISQDTNRILLLNKTDLEEKIEVDQLPDDFIKISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + V  L   +   +    +D
Sbjct: 361 QNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKAVESLHAVNEGLDLGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LVQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|229551112|ref|ZP_04439837.1| tRNA modification GTP-binding protein TrmE [Lactobacillus rhamnosus
           LMS2-1]
 gi|258541097|ref|YP_003175596.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus Lc 705]
 gi|229315504|gb|EEN81477.1| tRNA modification GTP-binding protein TrmE [Lactobacillus rhamnosus
           LMS2-1]
 gi|257152773|emb|CAR91745.1| tRNA modification GTPase MnmE [Lactobacillus rhamnosus Lc 705]
          Length = 462

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 140/456 (30%), Positives = 238/456 (52%), Gaps = 23/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD---GRIL 61
           +TI A+ST     AISI+RLSG +       + K K     +  ++ Y   +D   G ++
Sbjct: 9   DTIAAISTPPGEGAISIVRLSGETAVATANKVFKGKDLTQVKSHTIHYGHIVDPETGDLI 68

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ ++ V  +P++FT ED  E + HGGI   N IL+ L      R+A PGEF++RAF NG
Sbjct: 69  DEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQ-LLLGEGARMAEPGEFTKRAFLNG 127

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL EAES+ DLI ++T+   ++++  + G L  L  Q   ++  + + +E ++D+ E 
Sbjct: 128 RIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHHLIKQLRQEILEVLAQVEVNIDYPEY 187

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D    ++K +L     +K  I   ++    G+++R G    I+G  N GKSSL N +  
Sbjct: 188 -DTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRPNVGKSSLLNHMLH 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTD+ GTTRDVL   +++ G  +K+ DTAGI +T D VEK G++R+   +  ADL
Sbjct: 247 EEKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVERSRQAITQADL 306

Query: 302 ILLLKE------INSKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDHLISSF 346
           ILL+ +         K+ ++   +   I +  K DL +             +     +  
Sbjct: 307 ILLVLDQSEPLTTEDKQLLAATADKKRIIVLNKQDLPARLDTAALLQLVDADEIIKTAIP 366

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDI 404
           T +G++ L  +I  +     +    + + S+ R +  L Q  + L+           +D+
Sbjct: 367 TSDGMDALDERIAKLFFGGIENSQGTVMVSNARQIGLLRQASKSLDAVMAGIHAGMPIDL 426

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  ++  A   LG+ITG    ++L+  +FS+FC+GK
Sbjct: 427 VQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462


>gi|307709441|ref|ZP_07645898.1| tRNA modification GTPase TrmE [Streptococcus mitis SK564]
 gi|307619755|gb|EFN98874.1| tRNA modification GTPase TrmE [Streptococcus mitis SK564]
          Length = 457

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 145/458 (31%), Positives = 254/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I + K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTESFAIAQKIFEGKD-LNQVASHTLNYGHIVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+   +++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMKIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRETDDIVE+ G++R+   
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGIPLKLIDTAGIRETDDIVEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   +  + I +  K+DL          E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQETNRIILLNKTDLPEAIETSKLPEDVIRISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              + ++++  +I ++        +   +  S+ RH+  + + V  L+  +   E    +
Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLELGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|319938848|ref|ZP_08013212.1| tRNA modification GTPase mnmE [Streptococcus anginosus 1_2_62CV]
 gi|319811898|gb|EFW08164.1| tRNA modification GTPase mnmE [Streptococcus anginosus 1_2_62CV]
          Length = 457

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 251/457 (54%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F + + I K K        +L Y   +D  
Sbjct: 2   ITKEFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKDLSTVASHTLNYGHIIDPE 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ LA     R+A PGEF++R
Sbjct: 62  KNEILDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  ++K +       +  ++  +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTTKLLREKTAEFEKLLTQLLKTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIR+TDDIVE+ G++R+   +
Sbjct: 241 NNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGVERSKKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSF 346
           ++ADL+LL+   +       +K +   ++ + I +  K+DL          +    IS  
Sbjct: 301 QDADLVLLVLNASEPLTEQDRKLLEISQDTNRILLLNKTDLEEKIEVDKLPDDFIKISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
             + ++++  +I  +        +   +  S+ RH+  + + V  L+  +   +    +D
Sbjct: 361 QNQNIDKIEERINQLFFENAGIIEQDATYLSNARHISLIEKAVESLQAVNEGLDLGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LVQVDLTRTWEILGEITGDAAPDELISQLFSQFCLGK 457


>gi|322389428|ref|ZP_08062982.1| thiophene and furan oxidation protein ThdF [Streptococcus
           parasanguinis ATCC 903]
 gi|321143916|gb|EFX39340.1| thiophene and furan oxidation protein ThdF [Streptococcus
           parasanguinis ATCC 903]
          Length = 466

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 141/458 (30%), Positives = 251/458 (54%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I K K    + AS    +G     
Sbjct: 11  ITKEFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 69

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ILD+ ++    SP++FT ED  E + HGGIAV N IL+ + +    RLA PGEF++
Sbjct: 70  DKDEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLVIR-EGARLAEPGEFTK 128

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 129 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 188

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  +++ +       +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 189 IDYPEYDDVEEATTEIIREKTSEFEALLTNLLKTARRGKILREGISTAIIGRPNVGKSSL 248

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   
Sbjct: 249 LNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVEQIGVERSKKA 308

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K DL          E    IS 
Sbjct: 309 LKEADLVLLVLNASEPLTDQDRQLLEISQDSNRIILLNKVDLPEKIEIDQLPEDHIKISV 368

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++++ ++I ++        +   +  S+ RH+  + + V  L+  +        +
Sbjct: 369 LKNQNIDQIEDRINALFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLALGMPV 428

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 429 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 466


>gi|126651990|ref|ZP_01724182.1| tRNA modification GTPase [Bacillus sp. B14905]
 gi|126591259|gb|EAZ85368.1| tRNA modification GTPase [Bacillus sp. B14905]
          Length = 461

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 150/461 (32%), Positives = 249/461 (54%), Gaps = 25/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL----- 56
           E +TI A+ST     AI+I+RLSG     + + I K    K    K S    +G      
Sbjct: 2   EFDTIAAISTPMGEGAIAIVRLSGDEAVAIADKIFKSPGGKSLTTKDSHTIHYGHLVDPK 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ++++ +L +   P++FT ED  E + HGG+  VN +L+ LA     RLA PGEF++R
Sbjct: 62  TKEVVEEVMLSLMRGPKTFTREDVVEINCHGGLVSVNRVLQ-LALTNGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+    +++  M G+LS L G     L    + +E ++
Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLIGDLRQALLETLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +   ++    +++++I   +     G+I+R G   VILG  N GKSSL 
Sbjct: 181 DYPEYDDVEEMTVPVLVEKCTWVRDEIIKLLQTSSQGKILREGLSTVILGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSREAL 300

Query: 297 ENADLILLLK----EINSKKEISFP--KNIDFIFIGTKSDLYSTYT---------EEYDH 341
             ADLIL +     E+ ++ E  F   + +D+I I  K+DL              +    
Sbjct: 301 RGADLILFVLNYADELTAEDERLFETIEAMDYIVIINKTDLPQKINLARVKELAGKHRIV 360

Query: 342 LISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S    EG+ EL   I ++    + +    +  S+ RH+  L Q    +E A +  +  
Sbjct: 361 TTSLLQEEGVTELEEAIAALFFEGQLEAGDLTYVSNARHIALLHQAQATVEDAIAAAQAG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  ++      LG+I G    E L++ +FS+FC+GK
Sbjct: 421 VPVDMVQIDVTRTWELLGEIIGDTVQESLINQLFSQFCLGK 461


>gi|190171196|gb|ACE63668.1| ThdF [Enterobacter helveticus]
 gi|190171198|gb|ACE63669.1| ThdF [Enterobacter helveticus]
 gi|190171200|gb|ACE63670.1| ThdF [Enterobacter helveticus]
 gi|190171202|gb|ACE63671.1| ThdF [Enterobacter helveticus]
 gi|190171204|gb|ACE63672.1| ThdF [Enterobacter helveticus]
 gi|190171206|gb|ACE63673.1| ThdF [Enterobacter helveticus]
 gi|190171208|gb|ACE63674.1| ThdF [Enterobacter helveticus]
 gi|190171210|gb|ACE63675.1| ThdF [Enterobacter helveticus]
 gi|190171212|gb|ACE63676.1| ThdF [Enterobacter helveticus]
 gi|190171216|gb|ACE63678.1| ThdF [Enterobacter helveticus]
          Length = 439

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 151/442 (34%), Positives = 238/442 (53%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P PR A    F   D   LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGKQARDVAQAVLG-KLPKPRYADYLPFKDSDNTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P+N+    +  K+D+       S         +S+ +GEG+E
Sbjct: 299 TTDAVDPAQIWPDFMARLPQNLPITVVRNKADVTGEPAGLSEVNGHSLIRLSARSGEGVE 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L + +KS +      +     + +RHL  L +   +L+            +++AE LRL
Sbjct: 359 VLRDHLKSSMGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  SL +ITG    + LL  IF
Sbjct: 418 AQQSLSEITGEFTSDDLLGRIF 439


>gi|294138797|ref|YP_003554775.1| tRNA modification GTPase TrmE [Shewanella violacea DSS12]
 gi|293325266|dbj|BAI99996.1| tRNA modification GTPase TrmE [Shewanella violacea DSS12]
          Length = 453

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 156/455 (34%), Positives = 251/455 (55%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
            ++TI A +T      + IIR+SG    +V   +     P  R A    F   DG ++D+
Sbjct: 2   TEDTIVAQATAPGRGGVGIIRISGDQASEVAMAMLG-HIPKTRYADYCDFKTADGVVIDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ + +  ++R+A PGEFS +AF N K+
Sbjct: 61  GIALYFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLETKDIRIARPGEFSEQAFMNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + ++  + GE S+     ++K+T++R ++EA +DF + E+
Sbjct: 121 DLTQAEAIADLIDATSEQAAKSALNSLQGEFSTEVHALVEKVTNLRLYVEAAIDFPD-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   S  ++   +  +   + S  +  K G IIR G K+VI G  NAGKSSL NALA K+
Sbjct: 180 VDFLSDGKIAGSLNKIITRLDSVKASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT++ GTTRDVL   + ++G  + I DTAG+R+T D VEK GI+R + E+E AD +L
Sbjct: 240 SAIVTEVAGTTRDVLREHIHIDGMPLHIIDTAGLRDTSDTVEKIGIERAWAEIETADQVL 299

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDHL---ISSF 346
            + +  +   +             P  +    +  K+DL       T+++ H    IS+ 
Sbjct: 300 FMVDGTTTDAVDPHEIWPDFIDRLPSKLGITVVRNKADLTGESLELTQDHGHPVYRISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           TG G++ +   +KS++  +   L     + +RHL  L     +L +     E     +++
Sbjct: 360 TGLGIDSVKQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLMLGKEQLEVYLAGELL 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR++ ++L +ITG    + LL  IFS FCIGK
Sbjct: 419 AEELRMSQMALSEITGKFTSDDLLGKIFSSFCIGK 453


>gi|325267233|ref|ZP_08133896.1| tRNA modification GTPase TrmE [Kingella denitrificans ATCC 33394]
 gi|324981294|gb|EGC16943.1| tRNA modification GTPase TrmE [Kingella denitrificans ATCC 33394]
          Length = 458

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 158/454 (34%), Positives = 251/454 (55%), Gaps = 24/454 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      + ++R+SG +     + I   K P PR A    F    G  +D GLL
Sbjct: 9   TIAAIATANGRGGVGVVRISGKNLLPFAQQITGGKTPEPRTALYTDFLDAQGNAIDNGLL 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F +P SFTGED  E   HGG  V+  +L+   ++   R+A  GEF++RAF N K+DL 
Sbjct: 69  LYFTAPASFTGEDVLELQGHGGQIVLQMLLQRCLEL-GARIAEAGEFTKRAFLNNKLDLA 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AES+ADLI + ++   R+++  + G  S+     +D L  +R  +EA LDF E ED+  
Sbjct: 128 QAESVADLIDASSQSAARMAVRSLKGAFSAQIHTLVDDLITLRMLVEATLDFPE-EDIDF 186

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + +    +  L+  ++  ++  + G I+R+G  +V++G  N GKSSL NALA  DVAI
Sbjct: 187 LEAADAKGKLRALQTQLADILANARQGAILRDGMSVVLVGAPNVGKSSLLNALAGDDVAI 246

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTDI GTTRD +   + L+G  + I+DTAG+R+TDD+VEK GI+R+   V+NAD+ L+L 
Sbjct: 247 VTDIAGTTRDTVREQITLDGVPIHITDTAGLRQTDDVVEKIGIERSEKAVQNADVALILV 306

Query: 307 EIN-----SKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYD-------------HLISSF 346
           + +     + ++I    P ++  I +  K DL +      D               +S+ 
Sbjct: 307 DPSEGINKTTRDIMCRLPAHLKRIEVHNKIDLRNVQAARSDDAAAQSLSGADTVISLSAK 366

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
           TG GL+ L   +   +  +  +      +  RH++ L      LE A+L + +  ++++A
Sbjct: 367 TGAGLDLLKAALLQQIGWQ-GESEGLFLARTRHIHALQTAQAELENAALCDNNH-IELLA 424

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+LRLA  +  +ITG    + LL +IFS+FCIGK
Sbjct: 425 EHLRLAQAACNQITGEFTSDDLLGVIFSRFCIGK 458


>gi|165976918|ref|YP_001652511.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|303251175|ref|ZP_07337358.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303252998|ref|ZP_07339152.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248533|ref|ZP_07530550.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307250764|ref|ZP_07532696.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307253139|ref|ZP_07535019.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307257560|ref|ZP_07539322.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|205829051|sp|B0BR82|MNME_ACTPJ RecName: Full=tRNA modification GTPase mnmE
 gi|165877019|gb|ABY70067.1| tRNA modification GTPase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|302648130|gb|EFL78332.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302649975|gb|EFL80148.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306854956|gb|EFM87142.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306857200|gb|EFM89324.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306859382|gb|EFM91415.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306863936|gb|EFM95857.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 452

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 157/454 (34%), Positives = 251/454 (55%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           K+TI A +T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G
Sbjct: 2   KDTIVAQATPIGRGGVGILRISGPLAQEVAKEVLGKEL-KPRLANYLPFKDQDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   ++    + K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL
Sbjct: 240 AIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLL 299

Query: 305 LKEINSKKEISF-----------PKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFT 347
           + +   +   +F           P+NI    I  K DL   +   +E D      +S+ T
Sbjct: 300 MIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIA 406
             G++ L   +K  +  +         + +RHL  L     +LE   +        +++A
Sbjct: 360 KVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 419 EELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|223041689|ref|ZP_03611885.1| tRNA modification GTPase TrmE [Actinobacillus minor 202]
 gi|198246542|gb|ACH82231.1| tRNA modification GTPase TrmE [Actinobacillus minor 202]
          Length = 452

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 154/454 (33%), Positives = 252/454 (55%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G
Sbjct: 2   KETIVAQATPIGRGGVGILRVSGPLASEVAKAVVGKEL-KPRLANYLPFMDTDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ + ++  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILEVKGVRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   +++   + K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEAKLNDIITQLANVRKEAKQGSILREGMKVVIAGKPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL
Sbjct: 240 AIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADHVLL 299

Query: 305 LKEINSKKE-----------ISFPKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFT 347
           + + + ++               P+NI    I  K DL   S   E+ D      +S+ T
Sbjct: 300 MIDSSEQQADVFKTEWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTLIRLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIA 406
             G++ L   +K  +  +         + +RHL  L     +LE   +        +++A
Sbjct: 360 KVGVDLLREHLKQSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAGELLA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 419 EELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|218767437|ref|YP_002341949.1| tRNA modification GTPase TrmE [Neisseria meningitidis Z2491]
 gi|14195278|sp|Q9JWB7|MNME_NEIMA RecName: Full=tRNA modification GTPase mnmE
 gi|121051445|emb|CAM07738.1| probable thiophene and furan oxidation protein [Neisseria
           meningitidis Z2491]
 gi|319409699|emb|CBY90002.1| tRNA modification GTPase TrmE [Neisseria meningitidis WUE 2594]
          Length = 448

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 163/453 (35%), Positives = 248/453 (54%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCG-KTPKPRVATYADFTDEDGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +              + P  +  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRAILDALPLELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +      +  +      +  RH+  L      L +A+L      +++ AE
Sbjct: 358 GDGLDALKRTLLREAGWQ-GESEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELFAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|315644290|ref|ZP_07897460.1| tRNA modification GTPase TrmE [Paenibacillus vortex V453]
 gi|315280665|gb|EFU43954.1| tRNA modification GTPase TrmE [Paenibacillus vortex V453]
          Length = 458

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 154/458 (33%), Positives = 244/458 (53%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
            +TI A+ST      I+IIR+SGP   Q  E I K K    +  S    +G       G 
Sbjct: 3   SDTIAAISTAVGEGGIAIIRVSGPDAVQEVERIFKSKNKLTQVDSHTVHYGHIADPKTGE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            L++ L+ V  +P SFT ED  E   HGG+  V  +++    + N+RLA PGEF++RAF 
Sbjct: 63  NLEEVLVTVMRAPRSFTTEDVVEISAHGGVISVKRVMDL-LLLLNIRLAEPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI S+++    ++++ + G LS    +    L    + IE ++D+ 
Sbjct: 122 NGRIDLSQAEAVMDLIRSKSDRAFSVALKQVEGTLSRKINELRHTLVETLAHIEVNIDYP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  DV++ +S+ +      + ++I   +   + G+I+R G    I+G  N GKSSL N L
Sbjct: 182 EH-DVESLTSEFIKEKSQHVMHEIDKLLKTAQEGKILREGITTAIIGRPNVGKSSLLNTL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A+ + AIVTDIPGTTRDV+   + +    +K+ DTAGIRET D+VE+ G++R+   V  A
Sbjct: 241 AQDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRETMDVVEQIGVERSKHAVNEA 300

Query: 300 DLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYST---------YTEEYDHLIS 344
           DLILL+   +        + +   +    I I  K DL S          Y EE    +S
Sbjct: 301 DLILLVLNASEPLHQDELELMEQIRGRQCIVIMNKMDLPSQLDLDILHRYYPEELIVPMS 360

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
               EG++ L   I ++    + +    +  S+ RH+  L ++ + L+ A    E+   +
Sbjct: 361 VKAEEGIDRLEEAISNLFFSGQIEGGDLTYVSNVRHIALLKKSKQSLQDAYDAAEQLIPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+I  ++R+A   L +I G    + L+D IFS+FC+GK
Sbjct: 421 DMIQIDVRMAWEQLSEILGEAVGDSLIDQIFSQFCLGK 458


>gi|190150819|ref|YP_001969344.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307264169|ref|ZP_07545762.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915950|gb|ACE62202.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870489|gb|EFN02240.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 452

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 159/454 (35%), Positives = 253/454 (55%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           K+TI A +T      +SI+R+SGP   +V + +  K+   PR A+   F   DG +LD+G
Sbjct: 2   KDTIVAQATPIGRGGVSILRISGPLAQEVAKEVLGKEL-KPRLANYLPFKDQDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ + K+  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILKIKGIRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   ++    + K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL
Sbjct: 240 AIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLL 299

Query: 305 LKEINSKKEISF-----------PKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFT 347
           + +   +   +F           P+NI    I  K DL   +   +E D      +S+ T
Sbjct: 300 MIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIA 406
             G++ L   +K  +  +         + +RHL  L     +LE   +        +++A
Sbjct: 360 KVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 419 EELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|161621425|ref|NP_387444.2| tRNA modification GTPase TrmE [Sinorhizobium meliloti 1021]
 gi|307302553|ref|ZP_07582310.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti BL225C]
 gi|307316116|ref|ZP_07595560.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti AK83]
 gi|205422307|sp|Q92KW1|MNME_RHIME RecName: Full=tRNA modification GTPase mnmE
 gi|187904240|emb|CAC47917.2| Probable thiophene and furan oxidation protein [Sinorhizobium
           meliloti 1021]
 gi|306897956|gb|EFN28698.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti AK83]
 gi|306903223|gb|EFN33813.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti BL225C]
          Length = 439

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 215/439 (48%), Positives = 295/439 (67%), Gaps = 8/439 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+S+G+LP+ ++IIR+SGP        +C    P PR A+LR     +G  LD GL
Sbjct: 5   DTIYALSSGSLPAGVAIIRVSGPETADALVRLCG-TLPPPRIATLRTIRTRNGETLDSGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP+P SFTGED  E  VHGG AVV+ IL+ELA    LR A  GEF+RRAF+NGK+DL
Sbjct: 64  VLYFPTPASFTGEDCCELQVHGGRAVVSAILDELAATGGLRHAEAGEFARRAFQNGKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E LADLI++ETEMQRRL++E   G  S+LY  W  +LTH R+ IEA+LDF++E+DV 
Sbjct: 124 VEVEGLADLIAAETEMQRRLAIEQSGGGQSALYAGWARRLTHSRAMIEAELDFADEDDVP 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  +  D+  L+ +I  HI++  L EIIR+G KIVI G  NAGKSSL NALA++D+A
Sbjct: 184 GSVSAVIWEDVGRLRQEIDGHIARAGLAEIIRDGLKIVIAGEPNAGKSSLLNALARRDIA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT++ GTTRDVL++DL L G+ VK+ DTAG+RETD++VE+EGI+R    + +ADL+LLL
Sbjct: 244 IVTEVAGTTRDVLSVDLSLAGFSVKLFDTAGLRETDELVEREGIRRARQVIADADLVLLL 303

Query: 306 KEINSKKEIS--FPKNIDFIFIGTKSDLYST--YTEEYDHLISSFTGEGLEELINKIKSI 361
            E      I    P+N+  I + TK D  S      + D  +S+ TGEG+ +L+  ++S 
Sbjct: 304 SEKPGHFRIDEVLPENVPVIRVATKVDRPSPSWAPSDADIFLSTRTGEGMADLLTALQSH 363

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
           L +   +   ++PS KRH+  L Q    LE + +      L++ AE LR A  +LG+ITG
Sbjct: 364 LPDLAGRTALAMPSRKRHVDCLRQASAALERSLI---SSDLELRAEQLRQAGDALGRITG 420

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            VDVE LLD+IFS+FCIGK
Sbjct: 421 RVDVENLLDVIFSEFCIGK 439


>gi|116496320|ref|YP_808054.1| tRNA modification GTPase TrmE [Lactobacillus casei ATCC 334]
 gi|191639864|ref|YP_001989030.1| tRNA modification GTPase TrmE [Lactobacillus casei BL23]
 gi|227533513|ref|ZP_03963562.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239630797|ref|ZP_04673828.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301067924|ref|YP_003789947.1| tRNA modification GTPase, TrmE [Lactobacillus casei str. Zhang]
 gi|122262283|sp|Q033L0|MNME_LACC3 RecName: Full=tRNA modification GTPase mnmE
 gi|116106470|gb|ABJ71612.1| tRNA modification GTPase trmE [Lactobacillus casei ATCC 334]
 gi|190714166|emb|CAQ68172.1| tRNA modification GTPase trmE [Lactobacillus casei BL23]
 gi|227188842|gb|EEI68909.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239527080|gb|EEQ66081.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300440331|gb|ADK20097.1| tRNA modification GTPase, TrmE [Lactobacillus casei str. Zhang]
 gi|327383978|gb|AEA55454.1| TRNA modification GTPase TrmE:Small GTP-binding protein
           [Lactobacillus casei LC2W]
 gi|327387162|gb|AEA58636.1| TRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Lactobacillus casei BD-II]
          Length = 462

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 142/456 (31%), Positives = 240/456 (52%), Gaps = 23/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD---GRIL 61
           +TI A+ST     AISI+RLSG +       + K K     +  ++ Y   +D   G ++
Sbjct: 9   DTIAAISTPPGEGAISIVRLSGETAVATANQVFKGKDLSQVKSHTIHYGHIVDPESGELI 68

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ ++ V  +P++FT ED  E + HGGI   N IL+ L      R+A PGEF++RAF NG
Sbjct: 69  DEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQ-LLLGEGARMAEPGEFTKRAFLNG 127

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL EAES+ DLI ++T+   ++++  + G L +L  +   ++  + + +E ++D+ E 
Sbjct: 128 RIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHTLIKRLRQEILEVLAQVEVNIDYPEY 187

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D    ++K +L     ++  IS+ +S    G+++R G    I+G  N GKSSL N +  
Sbjct: 188 -DTDEMTTKMLLEKAQTVQKAISNLLSTASQGKVLREGLATAIVGRPNVGKSSLLNHMLH 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVTD+ GTTRDVL   +++ G  +K+ DTAGI +T D VEK G++R+   +  ADL
Sbjct: 247 EDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVERSRQAITQADL 306

Query: 302 ILLLKE------INSKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDHLISSF 346
           ILL+ +         ++ I    N   I +  K DL +           + +     +  
Sbjct: 307 ILLVLDQSEPLTDEDEQLIQATANKKRIIVLNKQDLPAQLDTTALLKLVSPDEIIKTAIP 366

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDI 404
           T  G++ L  +I  +     +    + + S+ R +  L Q  + L+           +D+
Sbjct: 367 TSAGMDALDERIAKLFFGGIENSQTTVMVSNARQIGLLRQANKSLDAVIAGIHAGMPIDL 426

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  ++  A   LG+ITG    ++L+  +FS+FC+GK
Sbjct: 427 VQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462


>gi|148381580|ref|YP_001256121.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC
           3502]
 gi|153931640|ref|YP_001385957.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC
           19397]
 gi|153937169|ref|YP_001389364.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. Hall]
 gi|168181110|ref|ZP_02615774.1| tRNA modification GTPase TrmE [Clostridium botulinum NCTC 2916]
 gi|170756593|ref|YP_001783278.1| tRNA modification GTPase TrmE [Clostridium botulinum B1 str. Okra]
 gi|226951095|ref|YP_002806186.1| tRNA modification GTPase TrmE [Clostridium botulinum A2 str. Kyoto]
 gi|166200473|sp|A7FPM0|MNME_CLOB1 RecName: Full=tRNA modification GTPase mnmE
 gi|166200474|sp|A5I816|MNME_CLOBH RecName: Full=tRNA modification GTPase mnmE
 gi|205829143|sp|B1IHR9|MNME_CLOBK RecName: Full=tRNA modification GTPase mnmE
 gi|148291064|emb|CAL85201.1| probable tRNA modification GTPase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152927684|gb|ABS33184.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC
           19397]
 gi|152933083|gb|ABS38582.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. Hall]
 gi|169121805|gb|ACA45641.1| tRNA modification GTPase TrmE [Clostridium botulinum B1 str. Okra]
 gi|182668135|gb|EDT80114.1| tRNA modification GTPase TrmE [Clostridium botulinum NCTC 2916]
 gi|226841162|gb|ACO83828.1| tRNA modification GTPase TrmE [Clostridium botulinum A2 str. Kyoto]
 gi|322807967|emb|CBZ05542.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Clostridium
           botulinum H04402 065]
          Length = 461

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 160/462 (34%), Positives = 258/462 (55%), Gaps = 26/462 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDG 58
            E +TI AV+T      ISIIR+SG     +   I K K        +  S+RY F ++ 
Sbjct: 2   KEFDTIAAVATPVGEGGISIIRISGDKSLDIVSSIFKGKNDRTLDDIKPYSMRYGFIIEK 61

Query: 59  R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ++D+ L+     P SFT ED+ E + HGG+     IL+EL K    RLA PGEF++
Sbjct: 62  ESKEMIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIKS-GARLAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I S+T++  + +++   G LS       +++  I + IEA 
Sbjct: 121 RAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKIIAHIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D++  + +++  D+  + N I + IS  + G+I+R G   VI+G  N GKSSL
Sbjct: 181 VDYPE-DDLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  ++ AIVT+IPGTTRDV+   ++++G  +KI DTAGIRET+D+VEK G++++  +
Sbjct: 240 LNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVEKSKEK 299

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE----------Y 339
           ++ ADL++ + +++ K      + + F KN  +I +  K DL     EE          Y
Sbjct: 300 IDEADLVIFMLDLSRKIDEEDIEIMDFIKNKKYIVLLNKLDLNKDLNEENHFIKELDSKY 359

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
               S     GL EL   IK++  +   K    I ++ RH   L ++    ++       
Sbjct: 360 IIKTSVKNNSGLNELKECIKNLFFSGEIKSDELIVTNARHQEALIRSRESCIQAIETLSD 419

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +D+ + ++R A   LG+ITG    E ++D IFS+FC+GK
Sbjct: 420 EISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461


>gi|121602914|ref|YP_988349.1| tRNA modification GTPase TrmE [Bartonella bacilliformis KC583]
 gi|205829116|sp|A1UQU6|MNME_BARBK RecName: Full=tRNA modification GTPase mnmE
 gi|120615091|gb|ABM45692.1| tRNA modification GTPase TrmE [Bartonella bacilliformis KC583]
          Length = 435

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 193/436 (44%), Positives = 274/436 (62%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFAVS+G LPS +++IR+SGP    + + +C    P  R          DG  LD  L
Sbjct: 2   DTIFAVSSGLLPSGVAVIRVSGPRVVDIVKTLCG-CLPKARFMHHGDLIARDGSFLDSAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED AEFH+HGG AVVN  L+EL+     RLA  GEFSRRAF  GKIDL
Sbjct: 61  TVFFPRPHSFTGEDCAEFHLHGGKAVVNRFLDELSTFTGCRLAEAGEFSRRAFIEGKIDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE LADLI +ETE QRRL++ G +G L+ LY  W +KL   R+ IEA+LDFS+E DV 
Sbjct: 121 VQAEGLADLIEAETESQRRLAVMGANGHLTELYRHWRNKLMTARALIEAELDFSDEADVS 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           NFSS +V  ++  L + +  HI++G+   I+R+G K+VI+G  N+GKSS+ N LA + VA
Sbjct: 181 NFSSDKVWQNMQELSDSLCEHIAEGERANILRDGIKVVIVGVPNSGKSSIINRLAGRPVA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+  GTTRD L + L L G  V + DTAG RET+  +E+ GI      V +ADL++L+
Sbjct: 241 IVTEEEGTTRDALEVRLILGGLPVLVMDTAGFRETESKIEQLGIDIAKQHVLDADLVILV 300

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            ++ + ++IS P  + +   +G K D+       +    S+  G   +  + +I+S   +
Sbjct: 301 DDMKNPQKISLPNTSAEIWRVGNKLDICEGDKTRWPIQFSALNGLNFDYFLKEIESFCLH 360

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +  ++    P+ KR +  L + V+ ++  S+N     L + AE+LR AS +LG+ITG +D
Sbjct: 361 RIAEIGNIFPARKRQIQLLKEAVKEIDS-SINYTFLDLSLRAEHLRRASDALGRITGDID 419

Query: 425 VEQLLDIIFSKFCIGK 440
           VE LLDIIFS+FCIGK
Sbjct: 420 VEDLLDIIFSQFCIGK 435


>gi|313885592|ref|ZP_07819342.1| tRNA modification GTPase TrmE [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619322|gb|EFR30761.1| tRNA modification GTPase TrmE [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 459

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 144/459 (31%), Positives = 238/459 (51%), Gaps = 22/459 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLDGR-- 59
           +E++TI A+ST     AI I+R+SG     +   + K      +   ++ Y   +D    
Sbjct: 2   YERDTIAAISTALGEGAIGIVRMSGGDALVMANQLFKGVNLLTQPSHTIHYGHIVDPESK 61

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ ++ +  +P+++T ED  E + HGGI  V  IL+   +M   RLA PGEF++RAF
Sbjct: 62  QIIDEVMVTLLRAPKTYTREDVVEINCHGGIMAVQAILDLCLQM-GARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T    + SM  + G LS         + +  + IE  +D+
Sbjct: 121 LNGRIDLSQAEAVMDLIEAKTNKAMQASMNQLQGSLSKKIRSLRQTMLNTLAQIEVTIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  S +++      +  ++   + Q + G + R G   VI+G  N GKSSL N 
Sbjct: 181 PEYDDVEEMSLQQLKTTAQAISQEVQHILKQAQSGRLFREGINTVIVGRPNVGKSSLLNR 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L   D AIVTDI GTTRD +   +++ G  +K+ DTAGIR+T+++VEK G++R+   +E 
Sbjct: 241 LTGWDKAIVTDIEGTTRDTIEEMVNVRGVPLKLIDTAGIRQTEEVVEKIGVERSRKALEE 300

Query: 299 ADLILL-LKEINSKKEISFP-----KNIDFIFIGTKSDLYSTYTEEY---------DHLI 343
           ADL++L L +    +E+        +    I +  K DL S                   
Sbjct: 301 ADLVILILNQAEDLQEVDLELLKASQGKKRIILLNKQDLPSQLDRNALAESSGTATIIET 360

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S     GL+ L ++I ++    + +    +   + RH   L Q +  L E+ S    +  
Sbjct: 361 SMLEEAGLDALEDEISNLFFKGQLQSTDINYLLNSRHTQLLKQALAALDEVQSAVAMELP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D+I  +   A   LG+ITG    ++LL+ +FS+FC+GK
Sbjct: 421 VDLIQIDYTRAWDLLGEITGDSVQDELLNELFSQFCLGK 459


>gi|153854261|ref|ZP_01995560.1| hypothetical protein DORLON_01554 [Dorea longicatena DSM 13814]
 gi|149753036|gb|EDM62967.1| hypothetical protein DORLON_01554 [Dorea longicatena DSM 13814]
          Length = 460

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 161/455 (35%), Positives = 241/455 (52%), Gaps = 23/455 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR-IL 61
           TI A+ST    S I I+R+SGP  FQ+ + + K KK       +  ++ Y + +DG  ++
Sbjct: 8   TIAAISTAMSNSGIGIVRMSGPEAFQIADRVYKGKKEKKLCDQKSHTIHYGYIVDGEQVI 67

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+++   P S+TGED+ E + HGG+ VV  ILE L K    R A PGE+++RAF NG
Sbjct: 68  DEVLVMLMRGPHSYTGEDTVEINCHGGVYVVKRILEVLIK-NGARPAEPGEYTKRAFLNG 126

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++ DLI+S+ E   + S+  + G +     +  +K+ +  +FIE  LD  E 
Sbjct: 127 RLDLSQAEAVGDLIASQNEYALQSSVSQLKGNIKDKISEMREKILYHTAFIETALDDPEH 186

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             V  +  + +   +  +   +   +     G II+ G + VILG  NAGKSSL N L  
Sbjct: 187 ISVDGY-GETLKKVVDEIMEAMKRLLDSCDDGRIIKEGVRTVILGKPNAGKSSLLNVLLG 245

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVTDI GTTRDVL   L+L+G  + I DTAGIR+T+D+VEK G+ R     + ADL
Sbjct: 246 EDRAIVTDIAGTTRDVLEEHLNLKGISLNIMDTAGIRDTEDVVEKIGVDRAKEYADKADL 305

Query: 302 ILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD--------HLISSFT 347
           IL + +       N  + +   K    I +  KSDL    T+E +          IS+  
Sbjct: 306 ILYVIDASRPLDENDAEILHLIKGKRAIILLNKSDLDMQVTKEQEELPEEFPVIEISAKN 365

Query: 348 GEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL-NEKDCGLDII 405
            +G+EEL + +K +           I  ++ R    L      LE  +     D   D  
Sbjct: 366 VQGIEELEDTLKEMFFQGELTFNDEIYITNVRQKTALQDAYAALERVNDSIAADMPEDFY 425

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +L  A  +LG ITG    E L++ IFSKFC+GK
Sbjct: 426 SIDLMDAYEALGNITGETIGEDLVNEIFSKFCMGK 460


>gi|254360929|ref|ZP_04977075.1| possible tRNA modification GTP-binding protein TrmE [Mannheimia
           haemolytica PHL213]
 gi|261493844|ref|ZP_05990356.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261495110|ref|ZP_05991574.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|153092408|gb|EDN73471.1| possible tRNA modification GTP-binding protein TrmE [Mannheimia
           haemolytica PHL213]
 gi|261309180|gb|EEY10419.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310446|gb|EEY11637.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 452

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 151/454 (33%), Positives = 241/454 (53%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           K+TI A +T      + I+R+SGP    V + +  K  P PR A+   F   DG +LD+G
Sbjct: 2   KDTIVAQATPIGRGGVGILRVSGPLAETVAQAVLGKTLP-PRIANYLPFKDEDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ + ++  LR+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILQVKGLRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+     +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINALVDSVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   +     + K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEAKLNEIIAQLDGVRREAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL
Sbjct: 240 AIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWEEIAQADHVLL 299

Query: 305 LKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFT 347
           + +   ++               P N+    I  K DL                  S+ T
Sbjct: 300 MIDSTEQQADQFRQEWAEFLAKLPANMPVTVIRNKVDLSGEQEGLIQVDDFTMIRLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIA 406
             G++ L   +K  +  +         + +RHL  L     +LE   +        +++A
Sbjct: 360 KVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFLAGELLA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 419 EELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|289677543|ref|ZP_06498433.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. syringae
           FF5]
          Length = 446

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 159/451 (35%), Positives = 238/451 (52%), Gaps = 26/451 (5%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFP 70
           ++T      + I+RLSGP   +  E I  +    PR A    F    G++LD+G+ + FP
Sbjct: 1   IATAQGRGGVGIVRLSGPLAGKAAEAIIGRTL-KPRFAHYGPFVDDAGQVLDEGIALYFP 59

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
            P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N K+DL +AE+
Sbjct: 60  GPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLNDKLDLAQAEA 118

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E E++   +  
Sbjct: 119 IADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE-EEIDFLADG 177

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
            VL  +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA ++ AIVT+I
Sbjct: 178 HVLKMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTEI 237

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD ILL+ +  +
Sbjct: 238 AGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEADRILLVVDATA 297

Query: 311 KKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISSFT----GEGL 351
            +               P       I  K+DL        T    H+  S +    GEGL
Sbjct: 298 PEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVTISLSARSGGEGL 357

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENL 409
           E L   +K+ +    +    S  + +RHL  L      LE   A L     G +++AE+L
Sbjct: 358 ELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAGAG-ELLAEDL 415

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 416 RQAQQALGEITGAFSSDDLLGRIFSSFCIGK 446


>gi|330685267|gb|EGG96928.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU121]
          Length = 459

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 149/459 (32%), Positives = 248/459 (54%), Gaps = 23/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           + +TI ++ST     AI I+RLSGP   ++ + + K KKP     S    +G        
Sbjct: 2   DFDTITSISTPMGEGAIGIVRLSGPQAVEIGDKLYKGKKPLAEVDSHTINYGHIIDPETN 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF
Sbjct: 62  ETVEEVMISVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTHGARMAEPGEYTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N 
Sbjct: 181 PEYDDVEDATTEFLLQQSKNIKQEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNN 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  
Sbjct: 241 LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSQ 300

Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL---------YSTYTEEYDHLI 343
           ADLIL +   N       +      KN D I I  K+DL              +      
Sbjct: 301 ADLILFVLNNNEALTEDDQTLYDVVKNEDVIVIINKTDLETHLDINEVKEMIGDTPLIQT 360

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S    EG++EL  +I+ +      +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|229170187|ref|ZP_04297873.1| tRNA modification GTPase mnmE [Bacillus cereus AH621]
 gi|228613288|gb|EEK70427.1| tRNA modification GTPase mnmE [Bacillus cereus AH621]
          Length = 458

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 149/458 (32%), Positives = 247/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +  + I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAIEKVDRIFKGKDLTQVSSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + IE ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETLAHIEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMSQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLIS 344
           DL+L++        N  +++    +  DFI I  K+DL      E              S
Sbjct: 301 DLVLIVVNYSEALTNEDEDLFHAVQGKDFIVIVNKTDLPQEIDMERVTDLAVGNRVITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q  R +  A    E    +
Sbjct: 361 LIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGRTINDAIEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L  A   LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|57651106|ref|YP_187524.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160757|ref|YP_495280.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|151222824|ref|YP_001333646.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161510921|ref|YP_001576580.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|258451369|ref|ZP_05699400.1| tRNA modification GTPase mnmE [Staphylococcus aureus A5948]
 gi|262049467|ref|ZP_06022339.1| tRNA modification GTPase [Staphylococcus aureus D30]
 gi|262051898|ref|ZP_06024113.1| tRNA modification GTPase [Staphylococcus aureus 930918-3]
 gi|282920717|ref|ZP_06328436.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9765]
 gi|284023035|ref|ZP_06377433.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           132]
 gi|294849826|ref|ZP_06790566.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9754]
 gi|73919888|sp|Q5HCI3|MNME_STAAC RecName: Full=tRNA modification GTPase mnmE
 gi|123484183|sp|Q2FDE8|MNME_STAA3 RecName: Full=tRNA modification GTPase mnmE
 gi|172049081|sp|A6QKK2|MNME_STAAE RecName: Full=tRNA modification GTPase mnmE
 gi|189036213|sp|A8YYS1|MNME_STAAT RecName: Full=tRNA modification GTPase mnmE
 gi|57285292|gb|AAW37386.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           COL]
 gi|87126731|gb|ABD21245.1| tRNA modification GTPase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|150375624|dbj|BAF68884.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160369730|gb|ABX30701.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257860899|gb|EEV83716.1| tRNA modification GTPase mnmE [Staphylococcus aureus A5948]
 gi|259160225|gb|EEW45254.1| tRNA modification GTPase [Staphylococcus aureus 930918-3]
 gi|259162464|gb|EEW47034.1| tRNA modification GTPase [Staphylococcus aureus D30]
 gi|282594125|gb|EFB99113.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9765]
 gi|294823374|gb|EFG39803.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9754]
 gi|315197916|gb|EFU28249.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320141415|gb|EFW33258.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144398|gb|EFW36163.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 459

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 148/457 (32%), Positives = 244/457 (53%), Gaps = 23/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           +TI ++ST     AI I+RLSGP   ++ + + K K       S    +G         +
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYGHIIDPESKEV 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N +LE L      R+A PGEF++RAF N
Sbjct: 64  IEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+ E
Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 183 YDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLNNLI 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVEK G++R+   +  AD
Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALSQAD 302

Query: 301 LILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYT---------EEYDHLISS 345
           LIL +   N              KN D I I  K DL              +      S 
Sbjct: 303 LILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQTSM 362

Query: 346 FTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLD 403
              EG++EL  +I+ +      +    +  S+ RH+  L Q  + ++ A    E    +D
Sbjct: 363 LKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGVPMD 422

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 423 MVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459


>gi|187777372|ref|ZP_02993845.1| hypothetical protein CLOSPO_00928 [Clostridium sporogenes ATCC
           15579]
 gi|187774300|gb|EDU38102.1| hypothetical protein CLOSPO_00928 [Clostridium sporogenes ATCC
           15579]
          Length = 461

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 162/462 (35%), Positives = 258/462 (55%), Gaps = 26/462 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP----FPRKASLRYFFGLDG 58
            E +TI AV+T      ISIIR+SG     +   I + K        +  S+RY F ++ 
Sbjct: 2   KEFDTIAAVATPLGEGGISIIRISGDKSLDIVSSIFRGKNDRLLDDIKPYSMRYGFIIEK 61

Query: 59  R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               I+D+ L+     P SFT ED+ E + HGG+     IL+EL K    RLA PGEF++
Sbjct: 62  ESKEIIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIKS-GARLAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I S+T++  + +++   G LS       +K+  I + IEA 
Sbjct: 121 RAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNKMIKIIAHIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D++  + +++  D+  + N I + IS  + G+I+R G   VI+G  N GKSSL
Sbjct: 181 VDYPE-DDLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  ++ AIVT+IPGTTRDV+   ++++G  +KI DTAGIRET+D+VEK G++++  +
Sbjct: 240 LNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVEKSKEK 299

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE----------Y 339
           +  ADL++ + +++ K      + ++F KN  +I +  KSDL     EE          Y
Sbjct: 300 IAEADLVIFMLDLSRKIDEEDIEIMNFIKNKKYIVLLNKSDLNKDLNEENHFIKGLDSKY 359

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
               S     GL EL   IK +  +   K    I ++ RH   L ++    ++       
Sbjct: 360 IIRTSVKNNSGLNELKECIKDLFFSGEIKSDEIIVTNARHQEALIRSKESCIQAIETLSD 419

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +D+ + ++R A   LG+ITG    E ++D IFS+FC+GK
Sbjct: 420 EISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461


>gi|152979629|ref|YP_001345258.1| tRNA modification GTPase TrmE [Actinobacillus succinogenes 130Z]
 gi|205829052|sp|A6VQS6|MNME_ACTSZ RecName: Full=tRNA modification GTPase mnmE
 gi|150841352|gb|ABR75323.1| tRNA modification GTPase TrmE [Actinobacillus succinogenes 130Z]
          Length = 452

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 159/454 (35%), Positives = 247/454 (54%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      + I+R+SGP    V + +  K    PR A+   F   DG  LD+G
Sbjct: 2   KETIVAQATPIGRGGVGILRVSGPLAADVAKAVVGKAL-KPRFANYLPFKDEDGTTLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALFFQSPNSFTGEDILELQGHGGQVVLDLLLKRILQVNGVRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDGVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEGHLNDIIAQLERVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD +LL
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGITRAWNEIEQADRVLL 299

Query: 305 LKEINSKKE-----------ISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---SSFT 347
           + + +                  P +I    I  K+DL       T+E    +   S+ T
Sbjct: 300 MLDSSDPDSRQPEKVRSEFLAKLPSHIPVTIIRNKTDLSGENEGVTQENGFTVIRLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIA 406
            +G++ L   +K  +  +         + +RHL  L +   +L    +   +    +++A
Sbjct: 360 RQGIDLLREHLKQSMGYQTGT-EGGFLARRRHLDALEKAAYHLRQGHIQLTEFRAGELLA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 419 EELRMVQSHLSEITGQFTSDDLLSNIFSSFCIGK 452


>gi|240013240|ref|ZP_04720153.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae DGI18]
 gi|240015686|ref|ZP_04722226.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae FA6140]
 gi|240079821|ref|ZP_04724364.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae FA19]
 gi|240116977|ref|ZP_04731039.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID1]
 gi|240120311|ref|ZP_04733273.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID24-1]
 gi|268595964|ref|ZP_06130131.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae FA19]
 gi|268602658|ref|ZP_06136825.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID1]
 gi|268549752|gb|EEZ44771.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae FA19]
 gi|268586789|gb|EEZ51465.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID1]
          Length = 448

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 165/453 (36%), Positives = 251/453 (55%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCG-KTPEPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI +      RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAALDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +    +N K  +   + P ++  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +    +    +      +  RH+  L      L +A+L      +++ AE
Sbjct: 358 GDGLDALKRTLL-CEAGWQGESEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELFAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|229065143|ref|ZP_04200436.1| tRNA modification GTPase mnmE [Bacillus cereus AH603]
 gi|228716172|gb|EEL67891.1| tRNA modification GTPase mnmE [Bacillus cereus AH603]
          Length = 458

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 149/458 (32%), Positives = 246/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +  + I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAIEKVDRIFKGKDLTQVSSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L      RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGARLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + IE ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETLAHIEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMSQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLIS 344
           DL+L++        N  +++    +  DFI I  K+DL      E              S
Sbjct: 301 DLVLIVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQEIDMERVTDLAVGNRVITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q  R +  A    E    +
Sbjct: 361 LIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGRTINDAIEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L  A   LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|205422319|sp|Q2K2S0|MNME_RHIEC RecName: Full=tRNA modification GTPase mnmE
          Length = 437

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 215/437 (49%), Positives = 297/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI+A+S+GA PS +SI+R+SGP    +   +     P  R AS R     +   +D G
Sbjct: 3   SDTIYALSSGAPPSGVSIVRISGPLTRNILIRLAGS-VPADRSASYRTIRTRNNEPIDNG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGED AE  +HG  AV+  +  EL  +P +R+AN GEFSRRAFENGK+D
Sbjct: 62  LVLFFPGPHSFTGEDVAELQIHGSKAVLAALFFELGDIPGVRMANEGEFSRRAFENGKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L+E E LADLIS+ETEMQRRL++E  +G +S++Y  W  +L   R+ IEA+LDF +E+DV
Sbjct: 122 LVEVEGLADLISAETEMQRRLAVEQSAGGVSAIYDSWAKRLIRARALIEAELDFPDEDDV 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S  V  D+  L++DI  H+     GEIIR+G+K+VI G  NAGKSSL NALA++DV
Sbjct: 182 PGSVSDMVWTDMKRLRDDIGLHLKSASAGEIIRDGFKVVIAGAPNAGKSSLLNALARRDV 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL +DLD++GYLVK+ DTAG+R+ DD VE EG++R  + + +ADL LL
Sbjct: 242 AIVTDIAGTTRDVLQVDLDIDGYLVKLYDTAGLRQADDRVEMEGVRRARVALRDADLALL 301

Query: 305 LKEINSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L ++++        + +  + +GTK DL  T +  YD  IS+ TG+GL EL   I  I++
Sbjct: 302 LVDMSNPMIPGDLDQTLPHVTVGTKKDLVETGSGRYDLQISTLTGDGLSELRQLIGRIVA 361

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            +F  L  +IPS +RH   L++ +  L+ A+++E D  L++  E LRLA+  LG+ITG V
Sbjct: 362 ERFTGLSLAIPSRQRHKDSLTKCLAALD-AAISEIDADLELRTEQLRLAAEYLGRITGRV 420

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVEQLLD+IFS+FCIGK
Sbjct: 421 DVEQLLDVIFSEFCIGK 437


>gi|304313413|ref|YP_003813011.1| tRNA modification GTPase [gamma proteobacterium HdN1]
 gi|301799146|emb|CBL47389.1| tRNA modification GTPase [gamma proteobacterium HdN1]
          Length = 464

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 164/460 (35%), Positives = 240/460 (52%), Gaps = 27/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLDGRILDK 63
            +TI A +T      + I+RLSGP    +   IC +      R A    FF   G +LD 
Sbjct: 8   NDTIAAQATPPGRGGVGIVRLSGPEALSIGLAICLRSGVLQARHAYFSEFFDAAGNVLDH 67

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FPSP SFTGED  E   HGG  V++ +++    +   RLA PGEFS RAF N K+
Sbjct: 68  GLLLYFPSPHSFTGEDVIELQAHGGPFVISQLMDRAITL-GARLARPGEFSERAFHNDKL 126

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI S +E   R ++  + G  S    +++++L  +R F+EA +DF E E+
Sbjct: 127 DLAQAEAIADLIDSGSEQAARSAIRSLQGAFSIKINEFLNELIRLRVFVEAAIDFPE-EE 185

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S   V + +  L   + +  S+ K G +++ G ++V+ G  NAGKSSL N LA  D
Sbjct: 186 IDFLSDGRVQDQLNKLLAHLDAIFSEAKRGVLLKEGMRVVLAGKPNAGKSSLLNQLAGTD 245

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT I GTTRDVL   + L+G  + ISDTAG+RE+ D VE+EGI+R + E+E AD IL
Sbjct: 246 RAIVTPIAGTTRDVLHEHIHLDGMPLHISDTAGLRESADEVEQEGIRRAWQEIERADRIL 305

Query: 304 LLKEINSKKEISFPKNID----------------FIFIGTKSDLYSTYTEEYDHLIS--- 344
           LL + +   ++   K                      +  K DL      + +H      
Sbjct: 306 LLTDASEHLDLHPAKFWPEFINTLHERAPSAMNRMTIVRNKIDLADEAAGQSEHDNIPTI 365

Query: 345 ---SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
              + +G+G++ L   +K I+    +    +  + +RHL  L     +L          G
Sbjct: 366 RLCARSGQGVDLLREHLKQIM-GYEEPAETTFSARQRHLLALETAREFLVTGQQQLLSHG 424

Query: 402 L-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE+LR A   L  ITG    + LL  IFS FCIGK
Sbjct: 425 AGELLAEDLRAAQEQLSTITGQFTSDDLLGEIFSSFCIGK 464


>gi|161899035|ref|YP_077161.2| tRNA modification GTPase TrmE [Symbiobacterium thermophilum IAM
           14863]
 gi|205829222|sp|Q67J33|MNME_SYMTH RecName: Full=tRNA modification GTPase mnmE
          Length = 457

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 150/459 (32%), Positives = 240/459 (52%), Gaps = 27/459 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLDG 58
           +ETI A++TGA    I I+R+SG    QV E I + ++  P         +  +     G
Sbjct: 3   EETIAAIATGAGEGGIGIVRISGADALQVAERIFRPRRGRPLGCRRSHTVTYGWVVTPGG 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L +V   P S+TGED  E   HGG   V  +LE+  +    RLA PGEF+RRAF
Sbjct: 63  DRIDEALALVMRGPHSYTGEDVVELQCHGGQLAVRRVLEQALQA-GARLAEPGEFTRRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ DLI ++T+     ++  + G L    G+  ++L  + + +EAD+DF
Sbjct: 122 LNGRLDLSQAEAVVDLIRAKTDRAMAAAVAHLRGSLRQAIGRIRERLMEMMAHLEADIDF 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E E ++  + +EV     +   ++   +   + G I+R G + V+ G  N GKSSL N 
Sbjct: 182 PELE-LEVQTREEVAAGCAWCLGEVERLLGGARTGRILREGLRAVLAGRPNVGKSSLLNR 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVT IPGTTRDV+   ++L G  V++ DTAG+R TDD VE+ G+ RT   +  
Sbjct: 241 LVRENRAIVTPIPGTTRDVIAEWVELGGVPVQLFDTAGLRPTDDPVERIGVARTHEALAQ 300

Query: 299 ADLILLLKEI------NSKKEIS-FPKNIDFIFIGTKSD---------LYSTYTEEYDHL 342
           A L+L++ +         ++ IS  P+    + +  K D         L           
Sbjct: 301 AHLVLVVVDAAAGLGPEDREWISQLPQGAARVGVANKIDLNPAFELSALREALGGAPVVG 360

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCG 401
           +S+ TGEG + L  ++  +           +  + R    + +   +L  A    E   G
Sbjct: 361 VSAETGEGFDALEAEVARVAGAFDASEE--LLVNARQAEAIRRARNHLRDAQATLESGLG 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++A +LR A ++LG++TG    E+LLD IFS+FCIGK
Sbjct: 419 DELVAIDLRAAWMALGEVTGETAGEELLDQIFSRFCIGK 457


>gi|126701303|ref|YP_001090200.1| tRNA modification GTPase TrmE [Clostridium difficile 630]
 gi|255102894|ref|ZP_05331871.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-63q42]
 gi|255308714|ref|ZP_05352885.1| tRNA modification GTPase TrmE [Clostridium difficile ATCC 43255]
 gi|123362962|sp|Q181S7|MNME_CLOD6 RecName: Full=tRNA modification GTPase mnmE
 gi|115252740|emb|CAJ70585.1| transfer RNA modification GTPase MnmE [Clostridium difficile]
          Length = 459

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 163/458 (35%), Positives = 249/458 (54%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR- 59
            +TI A++T      I I+R+SG    +V E I K           K +L Y   +D   
Sbjct: 4   DDTIAAIATAPGEGGIGILRISGEKALKVAEEIFKSMSGKSIEEYNKRTLIYGNIVDNEN 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ LL     P S+TGED  E + HGG   V  ILE L    ++RLA  GEF++RAF 
Sbjct: 64  IIDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILE-LILSKDVRLAEAGEFTKRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I ++T++   ++   + G LS    +  DK+T I + +E  +D+ 
Sbjct: 123 NGRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHVEVAIDYP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED+++ + + +      LK DI       + G+I+R G K VI+G  N GKSSL N++
Sbjct: 183 E-EDIEHITYQTLKEKTDELKKDIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNSI 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTDIPGTTRDV+   ++++G  +KI DTAGIR+TDDIVEK G++++     +A
Sbjct: 242 LGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVEKSKESFTSA 301

Query: 300 DLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEY---------DHLIS 344
           DLI+++ + + K      + +   K+   I +  K+DL     EE             IS
Sbjct: 302 DLIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIEEEKILKYVENNSIIKIS 361

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           +   EG+EEL +KI+S++     K   S + ++ RH   LS+  +    A +  E+    
Sbjct: 362 ALQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAYKSATDALIALEQSMPF 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D +  +L+     LG I G    E LLD IF  FCIGK
Sbjct: 422 DFVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 459


>gi|312867712|ref|ZP_07727918.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis F0405]
 gi|311096775|gb|EFQ55013.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis F0405]
          Length = 457

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 140/458 (30%), Positives = 252/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG   F + + I K K+   + AS    +G     
Sbjct: 2   ITKEFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKE-LSKVASHTLNYGHIVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ILD+ ++    SP++FT ED  E + HGGIAV N IL+ + +    RLA PGEF++
Sbjct: 61  DKDEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLVIR-EGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  +++ +       +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTEIIREKTREFEALLTNLLKTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DI+E+ G++R+   
Sbjct: 240 LNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDILEQIGVERSKKA 299

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           ++ ADL+LL+   +       ++ +   ++ + I +  K DL          E    IS 
Sbjct: 300 LKEADLVLLVLNASEPLTDQDRQLLEISQDSNRIILLNKVDLPEKIEIDQLPEDYIKISV 359

Query: 346 FTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402
              + ++++ ++I ++        +   +  S+ RH+  + + V  L+  +        +
Sbjct: 360 LKNQNIDQIEDRINALFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLALGMPV 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457


>gi|163943164|ref|YP_001648048.1| tRNA modification GTPase TrmE [Bacillus weihenstephanensis KBAB4]
 gi|229136309|ref|ZP_04265056.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST196]
 gi|205829111|sp|A9VTM0|MNME_BACWK RecName: Full=tRNA modification GTPase mnmE
 gi|163865361|gb|ABY46420.1| tRNA modification GTPase TrmE [Bacillus weihenstephanensis KBAB4]
 gi|228647181|gb|EEL03269.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST196]
          Length = 458

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 149/458 (32%), Positives = 247/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +  + I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAIEKVDRIFKGKDLTQVSSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + IE ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETLAHIEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMSQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLIS 344
           DL+L++        N  +++    +  DFI I  K+DL      E              S
Sbjct: 301 DLVLIVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQEIDMERVTDLAVGNRVITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q  R +  A    E    +
Sbjct: 361 LIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGRTINDAIEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L  A   LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|190171218|gb|ACE63679.1| ThdF [Enterobacter hormaechei ATCC 49162]
          Length = 439

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 154/442 (34%), Positives = 240/442 (54%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDADGTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  + ND+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNQVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG+E
Sbjct: 299 TTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVE 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
           +L N +K  +      +     + +RHL  L +  R+LE            +++AE LRL
Sbjct: 359 DLRNHLKQSMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQNLSEITGEFTSDDLLGRIF 439


>gi|220936472|ref|YP_002515371.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997782|gb|ACL74384.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. HL-EbGR7]
          Length = 446

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 161/449 (35%), Positives = 243/449 (54%), Gaps = 15/449 (3%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
           +  ++TI A++T      + ++R+SGP+   +   I  +  P PR A+   F G  G  L
Sbjct: 3   DSPEDTIAAIATPPGFGGVGVVRISGPNTAALARAILGR-LPAPRHATYAPFLGEQGETL 61

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D G+ + FP P S+TGED+ E   HGG  V++ +L     +   R A PGEF+ RAF NG
Sbjct: 62  DDGIALFFPGPRSYTGEDTLELQGHGGPVVLDLLLSRCLAL-GCRAARPGEFTERAFLNG 120

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++ADLI + +    R +   + G LS      +D LT +R  +EA LDF + 
Sbjct: 121 RLDLAQAEAVADLIEAGSAQAARSARRALEGALSHEVNALLDALTGLRVSVEAALDFPD- 179

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           EDV      +V   +  L   I   I     G ++R G ++VI G  NAGKSSL N L +
Sbjct: 180 EDVDILREAQVQARLADLSGRIDRLIRGAAQGALLREGLRLVIAGRPNAGKSSLLNRLVR 239

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVT IPGTTRDVL   + L+G  + + DTAG+RE+DD VE+EGI+R + E+E AD 
Sbjct: 240 REAAIVTHIPGTTRDVLRETVSLDGLPLHLVDTAGLRESDDPVEQEGIRRAWAEIEAADA 299

Query: 302 ILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD--HLISSFTGEGLE 352
           +LL+ +         +      P ++  I +  K DL      +      +S+  G+G++
Sbjct: 300 VLLVVDDALGEGEEEAAIRARLPGHLPVICVHNKIDLTGRVPGKQGGVLYLSAQDGQGVD 359

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRL 411
            L   +K+     F        + +RHL  L++T  ++  A        G +++AE+LRL
Sbjct: 360 SLREHLKA--QAGFSGGEGLFLARRRHLDALTRTAGHVATARDALAVGAGPELVAEDLRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG    + LL  IFS FCIGK
Sbjct: 418 AQETLGEITGRFSSDDLLGRIFSTFCIGK 446


>gi|168183721|ref|ZP_02618385.1| tRNA modification GTPase TrmE [Clostridium botulinum Bf]
 gi|237797100|ref|YP_002864652.1| tRNA modification GTPase TrmE [Clostridium botulinum Ba4 str. 657]
 gi|182673145|gb|EDT85106.1| tRNA modification GTPase TrmE [Clostridium botulinum Bf]
 gi|229263227|gb|ACQ54260.1| tRNA modification GTPase TrmE [Clostridium botulinum Ba4 str. 657]
          Length = 461

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 159/462 (34%), Positives = 258/462 (55%), Gaps = 26/462 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDG 58
            E +TI AV+T      ISIIR+SG     +   I K K        +  S+RY F ++ 
Sbjct: 2   KEFDTIAAVATPVGEGGISIIRISGDKSLDIVSSIFKGKNDRSLDDIKPYSMRYGFIIEK 61

Query: 59  R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ++D+ L+     P SFT ED+ E + HGG+     IL+EL K    RLA PGEF++
Sbjct: 62  ESKEMIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIKS-GARLAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I S+T++  + +++   G LS       +++  I + IEA 
Sbjct: 121 RAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKIIAHIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D++  + +++  D+  + N I + IS  + G+I+R G   VI+G  N GKSSL
Sbjct: 181 VDYPE-DDLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  ++ AIVT+IPGTTRDV+   ++++G  +KI DTAGIRET+D+VEK G++++  +
Sbjct: 240 LNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVEKSKEK 299

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE----------Y 339
           ++ ADL++ + +++ +      + + F KN  +I +  K DL     EE          Y
Sbjct: 300 IDEADLVIFMLDLSREIDEEDIEIMDFIKNKKYIVLLNKLDLNKDLNEENHFIKELDSKY 359

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
               S     GL EL   IK++  +   K    I ++ RH   L ++    ++       
Sbjct: 360 IIKTSVKNNSGLNELKECIKNLFFSGEIKSDELIVTNARHQEALIRSRESCIQAIETLSD 419

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +D+ + ++R A   LG+ITG    E ++D IFS+FC+GK
Sbjct: 420 EISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461


>gi|229014650|ref|ZP_04171764.1| tRNA modification GTPase mnmE [Bacillus mycoides DSM 2048]
 gi|228746661|gb|EEL96550.1| tRNA modification GTPase mnmE [Bacillus mycoides DSM 2048]
          Length = 458

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 149/458 (32%), Positives = 247/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +  + I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAIEKVDRIFKGKDLTQVSSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + IE ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETLAHIEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMSQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLIS 344
           DL+L++        N  +++    +  DFI I  K+DL      E              S
Sbjct: 301 DLVLIVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQGIDMERVTDLAVGNRVITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q  R +  A    E    +
Sbjct: 361 LIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGRTINDAIEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L  A   LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|116493570|ref|YP_805305.1| tRNA modification GTPase TrmE [Pediococcus pentosaceus ATCC 25745]
 gi|122264966|sp|Q03D59|MNME_PEDPA RecName: Full=tRNA modification GTPase mnmE
 gi|116103720|gb|ABJ68863.1| tRNA modification GTPase trmE [Pediococcus pentosaceus ATCC 25745]
          Length = 464

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 140/462 (30%), Positives = 247/462 (53%), Gaps = 25/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
           + E +TI A+ST      ISIIR+SG    +    I + K    +  S    +G      
Sbjct: 5   STEFDTIAAISTPPGEGGISIIRISGVDALKTASQIYRGKD-LNKVNSHTINYGHIIDPE 63

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +G  +D+ ++ V  +P ++T ED  E + HGGI   N IL+ +  +   RLA PGEF+ R
Sbjct: 64  NGNEVDEVMVSVMRAPHTYTKEDIVEINCHGGIVATNRILQIILGLD-ARLAKPGEFTER 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ DLI ++T+   +++++ + G LS L       +  + + +E ++
Sbjct: 123 AFLNGRIDLSQAEAVMDLIRAKTDQSMKVALDQLDGNLSHLITNLRQNILDVLAQVEVNI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +    + +K  I   +S  K G+++R+G    I+GH N GKSS+ 
Sbjct: 183 DYPEYDDVETMTARLLKEKAIEVKAKIQQLLSTAKQGKVLRDGLATAIIGHPNVGKSSIL 242

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTD+ GTTRDV+   ++++G  +K+ DTAGI ET+D VEK G+ R+   +
Sbjct: 243 NHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETEDKVEKIGVDRSRKAL 302

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDH 341
             ADL++L+ + +       ++ +    ++  I +  KSDL              ++   
Sbjct: 303 SQADLVILVLDSSVPLRDEDRELLRETNHMQRIVVLNKSDLEVKINLNELQEYVDDKEII 362

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKL--PFSIPSHKRHLYHLSQTVRYLEMASL-NEK 398
             S+ +  G ++L ++I ++      +      + ++ RH+  L Q    L+      E 
Sbjct: 363 KSSAVSPLGTKDLEDRIAAMFFAGSIENTSNNIMVTNARHIGLLKQADTALDAVLEGIET 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 423 GMPVDLVQIDMTRTWDLLGEITGDSYQDELLDQLFSQFCLGK 464


>gi|70727675|ref|YP_254591.1| tRNA modification GTPase TrmE [Staphylococcus haemolyticus
           JCSC1435]
 gi|82582308|sp|Q4L2Z2|MNME_STAHJ RecName: Full=tRNA modification GTPase mnmE
 gi|68448401|dbj|BAE05985.1| possible thiophene and furan oxidation protein [Staphylococcus
           haemolyticus JCSC1435]
          Length = 459

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 148/459 (32%), Positives = 247/459 (53%), Gaps = 23/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           + +TI ++ST     AI I+RLSGP   ++ + + K KK      S    +G        
Sbjct: 2   DFDTITSISTPMGEGAIGIVRLSGPQAVEIGDKLYKGKKKLEDVDSHTINYGHIVDPETN 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++++ ++ V  +P +FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF
Sbjct: 62  EVVEEVMISVLRAPRTFTREDIIEINCHGGILTINRILE-LTMTHGARMAEPGEYTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV++ +++ +L     +KN+I+  +  G  G+I+R G   VI+G  N GKSS+ N 
Sbjct: 181 PEYDDVEDATTEFLLEQSKKIKNEINLLLETGAQGKIMREGLSTVIVGKPNVGKSSMLNN 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  
Sbjct: 241 LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSE 300

Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDHLI 343
           ADLIL +   N       +      KN D I I  K+DL              +      
Sbjct: 301 ADLILFVLNNNEPLTQEDRTLYEVIKNEDAIVIVNKTDLEQNLDINEVKEMIGDTPLIQT 360

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S    EG+++L  +I+ +      +    +  S+ RH+  L Q    ++ A    E    
Sbjct: 361 SMLKQEGIDQLELQIRDLFFGGDVQNQDMTYVSNSRHISLLKQARNAIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWELLGEIIGESASDELIDQLFSQFCLGK 459


>gi|221135459|ref|ZP_03561762.1| tRNA modification GTPase TrmE [Glaciecola sp. HTCC2999]
          Length = 458

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 158/455 (34%), Positives = 245/455 (53%), Gaps = 21/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           ++ETI A +T      + IIR+SG     +   I     P PR A    F   DG +LD+
Sbjct: 7   QQETIVAQATAIGKGGVGIIRVSGADATAIAIAILG-HCPAPRHAYYGNFHDNDGTVLDQ 65

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  +++ +++ + K PN+RLA PGEFS RAF N K+
Sbjct: 66  GIALYFPNPNSFTGEDVLELQGHGGQIIMDMLIQAILKQPNVRLARPGEFSERAFLNDKL 125

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + ++   R ++  + GE S      ++++ H+R ++EA +DF E E+
Sbjct: 126 DLAQAEAIADLIDATSQQAARSALRSLQGEFSQRIHTLVEEIIHLRMYVEAAIDFPE-EE 184

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  +V  D+  +   ++    Q K G I+R G ++VI G  NAGKSSL NAL+ +D
Sbjct: 185 IDFLSDGKVQGDLQHIVETLALVQQQAKQGTILREGMQVVIAGRPNAGKSSLLNALSGRD 244

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL+  + ++G  + I DTAG+R++ D+VE+ GI+R +  + +AD +L
Sbjct: 245 AAIVTEIAGTTRDVLSEHIHIDGMPLHIIDTAGLRDSPDVVEQIGIERAWQAINDADRVL 304

Query: 304 LLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSF 346
            + +                    P N+    I  K+DL      Y          IS+ 
Sbjct: 305 FMVDSTESDSSDPHQIWPEFMAKLPDNMGVTIIKNKADLSGQQIGYDNNHGYPTFTISAA 364

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDII 405
              G+E +   +K  +            + +RH+  +     +L    S  E+    +++
Sbjct: 365 NKIGIELVSAHLKDCM-GFNTTSEGQFIARRRHVLAIETAANHLHTGKSQLEEHFAGELL 423

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LRLA ++L +ITG    + LL  IFS FCIGK
Sbjct: 424 AEELRLAQLALNEITGEFSSDDLLGKIFSSFCIGK 458


>gi|240949809|ref|ZP_04754138.1| tRNA modification GTPase TrmE [Actinobacillus minor NM305]
 gi|240295726|gb|EER46421.1| tRNA modification GTPase TrmE [Actinobacillus minor NM305]
          Length = 452

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 154/454 (33%), Positives = 251/454 (55%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G
Sbjct: 2   KETIVAQATPIGRGGVGILRVSGPLANEVAKAVVGKEL-KPRLANYLPFMDTDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILAVKGVRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   +++   + K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEAKLNDIITQLANVRKEAKQGSILREGMKVVIAGKPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL
Sbjct: 240 AIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADHVLL 299

Query: 305 LKEINSKKE-----------ISFPKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFT 347
           + + + ++               P+NI    I  K DL   S   E+ D      +S+ T
Sbjct: 300 MIDSSEQQADVFKTEWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTLIRLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIA 406
             G++ L   +K  +  +         + +RHL  L     +LE   +        +++A
Sbjct: 360 KVGVDLLREHLKQSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAGELLA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 419 EELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|86359701|ref|YP_471593.1| tRNA modification GTPase TrmE [Rhizobium etli CFN 42]
 gi|86283803|gb|ABC92866.1| GTP-binding protein in thiophene and furan oxidation protein
           [Rhizobium etli CFN 42]
          Length = 458

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 215/437 (49%), Positives = 297/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI+A+S+GA PS +SI+R+SGP    +   +     P  R AS R     +   +D G
Sbjct: 24  SDTIYALSSGAPPSGVSIVRISGPLTRNILIRLAGS-VPADRSASYRTIRTRNNEPIDNG 82

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGED AE  +HG  AV+  +  EL  +P +R+AN GEFSRRAFENGK+D
Sbjct: 83  LVLFFPGPHSFTGEDVAELQIHGSKAVLAALFFELGDIPGVRMANEGEFSRRAFENGKLD 142

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L+E E LADLIS+ETEMQRRL++E  +G +S++Y  W  +L   R+ IEA+LDF +E+DV
Sbjct: 143 LVEVEGLADLISAETEMQRRLAVEQSAGGVSAIYDSWAKRLIRARALIEAELDFPDEDDV 202

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S  V  D+  L++DI  H+     GEIIR+G+K+VI G  NAGKSSL NALA++DV
Sbjct: 203 PGSVSDMVWTDMKRLRDDIGLHLKSASAGEIIRDGFKVVIAGAPNAGKSSLLNALARRDV 262

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL +DLD++GYLVK+ DTAG+R+ DD VE EG++R  + + +ADL LL
Sbjct: 263 AIVTDIAGTTRDVLQVDLDIDGYLVKLYDTAGLRQADDRVEMEGVRRARVALRDADLALL 322

Query: 305 LKEINSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L ++++        + +  + +GTK DL  T +  YD  IS+ TG+GL EL   I  I++
Sbjct: 323 LVDMSNPMIPGDLDQTLPHVTVGTKKDLVETGSGRYDLQISTLTGDGLSELRQLIGRIVA 382

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            +F  L  +IPS +RH   L++ +  L+ A+++E D  L++  E LRLA+  LG+ITG V
Sbjct: 383 ERFTGLSLAIPSRQRHKDSLTKCLAALD-AAISEIDADLELRTEQLRLAAEYLGRITGRV 441

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVEQLLD+IFS+FCIGK
Sbjct: 442 DVEQLLDVIFSEFCIGK 458


>gi|289551831|ref|YP_003472735.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
           lugdunensis HKU09-01]
 gi|289181362|gb|ADC88607.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
           lugdunensis HKU09-01]
          Length = 459

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 146/459 (31%), Positives = 246/459 (53%), Gaps = 23/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           + +TI ++ST     AI I+RLSGP   ++ + + K K       S    +G        
Sbjct: 2   DFDTITSISTPMGEGAIGIVRLSGPQAIEIGDKLYKGKYKLAEVDSHTINYGHIVDPETN 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++++ ++ V  +P++FT ED  E + HGGI  +N +LE L      R+A PGE+S+RAF
Sbjct: 62  EVVEEVMISVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTHGARMAEPGEYSKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV++ +++ +L     +K +I   +  G  G+I+R G   VI+G  N GKSS+ N 
Sbjct: 181 PEYDDVEDATTEFLLEQSKNIKAEIDKLLETGAQGKIMREGLSTVIVGKPNVGKSSMLNN 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  
Sbjct: 241 LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSQ 300

Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           ADLIL +   N       +      +N D I I  K+DL      E    +         
Sbjct: 301 ADLILFVLNYNEPLTKEDRTLFEVIENEDVIVIVNKTDLVQQLNIEEVQEMIGNKPLIQT 360

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S    EG++EL  +I+ +      +    +  S+ RH+  L Q    ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHIALLKQARHAIQDAIDAAESGVP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L++ +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELINQLFSQFCLGK 459


>gi|59802408|ref|YP_209120.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae FA 1090]
 gi|194100062|ref|YP_002003202.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae NCCP11945]
 gi|239998058|ref|ZP_04717982.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae 35/02]
 gi|240112030|ref|ZP_04726520.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae MS11]
 gi|240124802|ref|ZP_04737688.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae SK-92-679]
 gi|254492836|ref|ZP_05106007.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae 1291]
 gi|268593908|ref|ZP_06128075.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae 35/02]
 gi|268598084|ref|ZP_06132251.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae MS11]
 gi|268683378|ref|ZP_06150240.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|293397863|ref|ZP_06642069.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae F62]
 gi|81311136|sp|Q5F529|MNME_NEIG1 RecName: Full=tRNA modification GTPase mnmE
 gi|226704783|sp|B4RRB9|MNME_NEIG2 RecName: Full=tRNA modification GTPase mnmE
 gi|59719303|gb|AAW90708.1| putative thiophene and furan oxidation protein [Neisseria
           gonorrhoeae FA 1090]
 gi|193935352|gb|ACF31176.1| tRNA modification GTPase [Neisseria gonorrhoeae NCCP11945]
 gi|226511876|gb|EEH61221.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae 1291]
 gi|268547297|gb|EEZ42715.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae 35/02]
 gi|268582215|gb|EEZ46891.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae MS11]
 gi|268623662|gb|EEZ56062.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|291611809|gb|EFF40878.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae F62]
 gi|317165500|gb|ADV09041.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 448

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 165/453 (36%), Positives = 251/453 (55%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCG-KTPEPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI +      RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEGLITLRMLVEAALDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +    +N K  +   + P ++  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +    +    +      +  RH+  L      L +A+L      +++ AE
Sbjct: 358 GDGLDALKRTLL-CEAGWQGESEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELFAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|306839729|ref|ZP_07472531.1| tRNA modification GTPase TrmE [Brucella sp. NF 2653]
 gi|306405189|gb|EFM61466.1| tRNA modification GTPase TrmE [Brucella sp. NF 2653]
          Length = 424

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 196/425 (46%), Positives = 285/425 (67%), Gaps = 3/425 (0%)

Query: 17  PSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFT 76
           PS +++IR+SGP    V E IC+   P PR A+L  F   +G  +D+ L + FP+P SFT
Sbjct: 2   PSGVAVIRISGPKTRFVYETICQ-AIPEPRHAALLTFRSRNGDAIDRSLTLFFPTPHSFT 60

Query: 77  GEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLIS 136
           GED AEFH+HGG AVV  +L  L ++P  R+A  GEF+RRAF NGK+DL  AE LADLI+
Sbjct: 61  GEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLADLIA 120

Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI 196
           +ETE QRRL+++  SG    LY +W  +L + R+FIEA+LDF++E DV    S +V   +
Sbjct: 121 AETEGQRRLALQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVWRQL 180

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             LK++I  HI+ GK   ++R+G  +VI+G  NAGKSSL N LA +DVAI+++  GTTRD
Sbjct: 181 SALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVAIISEEAGTTRD 240

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           +L + LDL G  V ++DTAG+RETD +VEK GI+R    +  ADL+L L++++    ++ 
Sbjct: 241 LLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSLEDMSGPVPVTV 300

Query: 317 PK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            K   +   IGTK+DL    +  + + IS+ TG GLE+L++ +++    K  ++  ++P+
Sbjct: 301 EKIEAETWLIGTKADLGGRASGLWKYRISTMTGSGLEQLLDALQAFAEAKIGQIEDAVPT 360

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435
            +RH+  L  T+  +E A +   D  L++ AEN+RLAS  LG+ITG VDVE++LD+IFS+
Sbjct: 361 RQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVDVEEILDVIFSQ 419

Query: 436 FCIGK 440
           FCIGK
Sbjct: 420 FCIGK 424


>gi|260441411|ref|ZP_05795227.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae DGI2]
 gi|291044771|ref|ZP_06570480.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae DGI2]
 gi|291011665|gb|EFE03661.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae DGI2]
          Length = 448

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 165/453 (36%), Positives = 250/453 (55%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCG-KTPEPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI +      RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAALDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +    +N K  +   + P ++  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +    +    +      +  RH+  L      L +A L      +++ AE
Sbjct: 358 GDGLDALKRTLL-CEAGWQGESEGLFLARTRHVNALKAAQEELSLAVLCGNHQ-IELFAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|292493916|ref|YP_003529355.1| tRNA modification GTPase TrmE [Nitrosococcus halophilus Nc4]
 gi|291582511|gb|ADE16968.1| tRNA modification GTPase TrmE [Nitrosococcus halophilus Nc4]
          Length = 458

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 165/450 (36%), Positives = 247/450 (54%), Gaps = 18/450 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T      I ++R+SGP C QV + I  +  P PR A+   F   +G  +D+G
Sbjct: 13  SDTIAAIATPPGRGGIGVVRVSGPLCRQVAKHITGR-LPPPRYAAFSRFRDGEGETIDRG 71

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + FPSP SFTGED  E   HGG  V++ +L  + ++  +RLA PGEFS RAF N KID
Sbjct: 72  LALYFPSPHSFTGEDVLELQGHGGPVVMDWLLSCVLQL-GVRLARPGEFSERAFLNNKID 130

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI S +E   R ++  + GE S+      D+L  +R  +EAD+DFS+ ED+
Sbjct: 131 LAQAEAIADLIESASEQAARSALRSLHGEFSAQIQDLRDQLIELRCLVEADIDFSD-EDI 189

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                  V   +  L++ +       + G ++R G ++V++G  N GKSSL N LA  + 
Sbjct: 190 DFIEQGAVAERLQELQSILRRIHRSARQGALLREGIRVVLVGRPNVGKSSLHNRLAGFEA 249

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTD+PGTTRD+L   + ++G  +++SDTAG+ ++ DI+E+EG++RT  E  NAD +LL
Sbjct: 250 AIVTDVPGTTRDLLREHITIDGLPIRLSDTAGLHDSMDIIEQEGMRRTREEFTNADHVLL 309

Query: 305 -------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGL 351
                  L E+        P N+    I  K DL     E  +         S  TG G+
Sbjct: 310 IADDQVGLTELEQSILGELPDNVSHTLILNKIDLSGASAERREDSQRVVLRLSVLTGAGM 369

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAENLR 410
           + L+ ++K        +      + +RHL  L +    +  A    K+ G  +++AE LR
Sbjct: 370 DLLLQRLKECAGFD-GEGEGYFLARRRHLEALQRAGAAVAAAGEILKEEGPEEMLAEELR 428

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  +L +ITG    + LL  IFS FCIGK
Sbjct: 429 QAQNALAEITGEYRSDDLLGEIFSTFCIGK 458


>gi|254977337|ref|ZP_05273809.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-66c26]
 gi|255094668|ref|ZP_05324146.1| tRNA modification GTPase TrmE [Clostridium difficile CIP 107932]
 gi|255316421|ref|ZP_05358004.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-76w55]
 gi|255519081|ref|ZP_05386757.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-97b34]
 gi|255652264|ref|ZP_05399166.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-37x79]
 gi|306521979|ref|ZP_07408326.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-32g58]
          Length = 459

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 163/458 (35%), Positives = 249/458 (54%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR- 59
            +TI A++T      I I+R+SG    +V E I K           K +L Y   LD   
Sbjct: 4   DDTIAAIATAPGEGGIGILRISGERALKVAEEIFKSMSGKSIEEYNKRTLIYGNILDNEN 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ LL     P S+TGED  E + HGG   V  ILE L    ++RLA  GEF++RAF 
Sbjct: 64  IIDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILE-LILSKDVRLAEAGEFTKRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I ++T++   ++   + G LS    +  DK+T I + +E  +D+ 
Sbjct: 123 NGRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHVEVAIDYP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED+++ + + +      LK +I       + G+I+R G K VI+G  N GKSSL N++
Sbjct: 183 E-EDIEHITYQTLKEKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNSI 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTDIPGTTRDV+   ++++G  +KI DTAGIR+TDDIVEK G++++     +A
Sbjct: 242 LGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVEKSKESFTSA 301

Query: 300 DLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEY---------DHLIS 344
           DLI+++ + + K      + +   K+   I +  K+DL     EE             IS
Sbjct: 302 DLIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIEEEKILKYVENNSIIKIS 361

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           +   EG+EEL +KI+S++     K   S + ++ RH   LS+  +    A +  E+    
Sbjct: 362 ALQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAYKSATDALIALEQSMPF 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D +  +L+     LG I G    E LLD IF  FCIGK
Sbjct: 422 DFVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 459


>gi|239637283|ref|ZP_04678270.1| tRNA modification GTPase TrmE [Staphylococcus warneri L37603]
 gi|239597120|gb|EEQ79630.1| tRNA modification GTPase TrmE [Staphylococcus warneri L37603]
          Length = 459

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 149/459 (32%), Positives = 249/459 (54%), Gaps = 23/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           + +TI ++ST     AI I+RLSGP   ++ + + K KKP     S    +G        
Sbjct: 2   DFDTITSISTPMGEGAIGIVRLSGPQAVEIGDKLYKGKKPLAEVDSHTINYGHIIDPETS 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF
Sbjct: 62  ETVEEVMISVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTHGARMAEPGEYTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N 
Sbjct: 181 PEYDDVEDATTEFLLQQSKNIKQEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNN 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  
Sbjct: 241 LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSQ 300

Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL---------YSTYTEEYDHLI 343
           ADLIL +   N       +      KN D I I  K+DL          +   +      
Sbjct: 301 ADLILFVLNNNEALTEDDQTLYDVVKNEDVIVIINKTDLETHLDINEVKAMIGDTPLIQT 360

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S    EG++EL  +I+ +      +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|223043424|ref|ZP_03613470.1| tRNA modification GTPase TrmE [Staphylococcus capitis SK14]
 gi|314934963|ref|ZP_07842322.1| tRNA modification GTPase TrmE [Staphylococcus caprae C87]
 gi|222443213|gb|EEE49312.1| tRNA modification GTPase TrmE [Staphylococcus capitis SK14]
 gi|313652893|gb|EFS16656.1| tRNA modification GTPase TrmE [Staphylococcus caprae C87]
          Length = 459

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 147/459 (32%), Positives = 246/459 (53%), Gaps = 23/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           + +TI ++ST     AI I+RLSGP   ++ + + K KK      +    +G        
Sbjct: 2   DFDTITSISTPMGEGAIGIVRLSGPQAIEIGDTLYKGKKKLSEVDTHTINYGHIIDPETN 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF
Sbjct: 62  ETVEEVMISVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N 
Sbjct: 181 PEYDDVEDATTEFLLEQSKNIKEEINRLLETGTQGKIMREGLSTVIVGRPNVGKSSMLNN 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  
Sbjct: 241 LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSE 300

Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           ADLIL +   N              KN D I I  K+DL      +    +         
Sbjct: 301 ADLILFVLNNNEPLTEDDQTLYEVVKNEDVIVIINKTDLEPRLDIDEVKEMIGDMPLIQT 360

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S    EG++EL  +I+ +      +    +  S+ RH+  L Q    ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARHSIQDAIDAAESGVP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|319947147|ref|ZP_08021381.1| thiophene and furan oxidation protein ThdF [Streptococcus australis
           ATCC 700641]
 gi|319747195|gb|EFV99454.1| thiophene and furan oxidation protein ThdF [Streptococcus australis
           ATCC 700641]
          Length = 457

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 141/457 (30%), Positives = 253/457 (55%), Gaps = 18/457 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
           +  E +TI A+ST     AI I+RLSG   F++ + I K K        +L Y   +D  
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTDSFKIAQKIFKGKDLTSVASHTLNYGHIVDPD 61

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              ILD+ ++    SP++FT ED  E + HGGIAV N IL+ + +    RLA PGEF++R
Sbjct: 62  KDEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLVIR-EGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E ++
Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E +DV+  +++ +       +  +++ +   + G+I+R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDDVEEATTEIIREKTTEFEALLTNLLKTARRGKILREGISTAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   +
Sbjct: 241 NNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVERIGVERSRKAL 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE---YDHLISS-F 346
           + ADL+LL+   +       ++ +   ++ + I +  K DL      +    DH+  S  
Sbjct: 301 KEADLVLLVLNASEPLTDQDRQLLEISQDSNRIILLNKVDLPQQIELDEIPADHIKISVL 360

Query: 347 TGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
             + + ++ ++I ++        +   +  S+ RH+  + + V  L+  +        +D
Sbjct: 361 KNQNINQIEDRINALFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLAMGMPVD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 LLQVDLTRTWEILGEITGDATPDELITQLFSQFCLGK 457


>gi|315640365|ref|ZP_07895480.1| tRNA modification GTPase TrmE [Enterococcus italicus DSM 15952]
 gi|315483870|gb|EFU74351.1| tRNA modification GTPase TrmE [Enterococcus italicus DSM 15952]
          Length = 465

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 144/463 (31%), Positives = 241/463 (52%), Gaps = 24/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG     +   + +   K      S    +G    
Sbjct: 4   ITKEFDTIAAISTPPGEGAISIVRLSGDQAIAIAANVFQAGTKQLAAVPSHTIHYGHIID 63

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               +++D+ ++ V  +P++FT ED  E + HGGI VVN +  +L      RLA PGEF+
Sbjct: 64  PKTEQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQL-LQLLLRQGARLAEPGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E 
Sbjct: 123 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLALNQLDGRLSNLIRALRQEILETLAQVEV 182

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E +DV+  +S+ ++     ++  I + +   K G+I+R G    I+G  N GKSS
Sbjct: 183 NIDYPEYDDVEALTSQLLVEKAHHVQAQIQALLQTAKQGKILREGLNTTIIGRPNVGKSS 242

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L +++ AIVTD+ GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+  
Sbjct: 243 LLNHLLREEKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRETEDIVERIGVQRSRQ 302

Query: 295 EVENADLILLLK---------------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
            +  ADLILL+                  ++ K I      D      +S L S   +  
Sbjct: 303 ALAKADLILLVLNQSEPLSEEDRQLLQATDATKRIVLLNKTDLPSQLDRSALASLVGDAP 362

Query: 340 DHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397
              +S     GL++L   I  +    +      S  S+ RH+  L    + L ++ S  E
Sbjct: 363 VFEVSVLENAGLDKLEQAIADLFFGGQTTDKDASYVSNTRHIALLEHASQALSDVISGIE 422

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++  ++      LG+I G    ++L+  +FS+FC+GK
Sbjct: 423 AGMPVDLVQIDMTRCWDDLGEIVGDSVQDELITQLFSQFCLGK 465


>gi|153937917|ref|YP_001392999.1| tRNA modification GTPase TrmE [Clostridium botulinum F str.
           Langeland]
 gi|166200475|sp|A7GJN9|MNME_CLOBL RecName: Full=tRNA modification GTPase mnmE
 gi|152933813|gb|ABS39311.1| tRNA modification GTPase TrmE [Clostridium botulinum F str.
           Langeland]
          Length = 461

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 159/462 (34%), Positives = 256/462 (55%), Gaps = 26/462 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDG 58
            E +TI AV+T      ISIIR+SG     +   I K K        +  S+RY F ++ 
Sbjct: 2   KEFDTIAAVATPVGEGGISIIRISGDKSLDIVSSIFKGKNDRTLDDIKPYSMRYGFIIEK 61

Query: 59  R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ++D+ L+     P SFT ED+ E + HGG+     IL+EL K    RLA PGEF++
Sbjct: 62  ESKEMIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIKS-GARLAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I S+T++  + +++   G LS       +++  I + IEA 
Sbjct: 121 RAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKIIAHIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D++  + +++  D+  + N I + IS  + G+I+R G   VI+G  N GKSSL
Sbjct: 181 VDYPE-DDLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  ++ AIVT+IPGTTRDV+   ++++G   KI DTAGIRET+D+VEK G++++  +
Sbjct: 240 LNALINENKAIVTEIPGTTRDVIEEYINIDGIPTKIVDTAGIRETEDVVEKIGVEKSKEK 299

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE----------Y 339
           ++ ADL++ + +++ K      + + F KN  +I +  K DL     EE          Y
Sbjct: 300 IDEADLVIFMLDLSKKIDEEDIEIMDFIKNKKYIVLLNKLDLNKDLNEENHFIKELDSKY 359

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
               S     GL EL   IK++  +   K      ++ RH   L ++    ++       
Sbjct: 360 IIKTSVKNNSGLNELKECIKNLFFSGEIKSDELTVTNARHQEALIRSRESCIQAIETLSD 419

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +D+ + ++R A   LG+ITG    E ++D IFS+FC+GK
Sbjct: 420 EISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461


>gi|126668974|ref|ZP_01739913.1| tRNA modification GTPase [Marinobacter sp. ELB17]
 gi|126626558|gb|EAZ97216.1| tRNA modification GTPase [Marinobacter sp. ELB17]
          Length = 456

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 162/460 (35%), Positives = 245/460 (53%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MNH  ETI A++T    + + I+R+SGP    +   +     P PR A    F      +
Sbjct: 1   MNHPTETIAAIATAPGQAGVGIVRVSGPQATVIAHSLLGYA-PKPRYAHYGPFKDSQDEL 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + FP+P SFTGED  E   HGG  +++ +L E+  +   RLA PGEFS RAF N
Sbjct: 60  IDEGIGLFFPNPYSFTGEDVFELQGHGGTVILDLLLREVCAL-GARLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI S +E   R ++  M G  S      +D +TH+R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIESSSEQAARCAVRSMQGVFSRRIETLVDAVTHLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +  +V  D+  L++ +   + + + G I+R+G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGKVATDLQSLRDQLQGIMLEAQQGTIMRDGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT I GTTRDVL   + ++G  + I DTAG+R++ D VE+ GI R + E+  AD
Sbjct: 238 GREAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDEVEQIGIARAWDEIRQAD 297

Query: 301 LILLLKEI-----NSKKEI------SFPKNIDFIFIGTKSDLYST--------YTEEYDH 341
            ILL+ +       S  EI        P       I  K DL             +    
Sbjct: 298 RILLMVDATTTDRTSPHEIWPDFIDQLPAAAPITVIRNKVDLSGESVGLIELSPQQAPVI 357

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            +++ +  GL+ L + +K  +            + +RHL  L +   +L       +  G
Sbjct: 358 RLAAKSSAGLDALRDHLKQCM-GFASTTEGGFLARRRHLDALERAAEFLVQGQTQLEGYG 416

Query: 402 L-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++AE+LR A  +LG+ITG +  + LL  IF  FCIGK
Sbjct: 417 AGELLAEDLRAAQSALGEITGQITPDDLLGKIFGSFCIGK 456


>gi|331268194|ref|YP_004394686.1| tRNA modification GTPase TrmE [Clostridium botulinum BKT015925]
 gi|329124744|gb|AEB74689.1| tRNA modification GTPase TrmE [Clostridium botulinum BKT015925]
          Length = 462

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 169/460 (36%), Positives = 255/460 (55%), Gaps = 24/460 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD- 57
            E +TI A++T    S +SIIR+SG     +   I   K        R  S+RY F +D 
Sbjct: 5   KEFDTIAAIATNLGESGVSIIRVSGERALSIVSDIFIGKNDRKLDDIRTYSMRYGFIIDK 64

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G  LD+ ++     P SFT ED  E + HGG+ V   ILEE+ K    RLA+PGEF++
Sbjct: 65  VSGEKLDEVIVSYMKGPRSFTAEDVVEINCHGGVVVTKRILEEVMKA-GARLASPGEFTK 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI+++TE+  + ++E   G+LS       DKL  I + IEA 
Sbjct: 124 RAFLNGRIDLSQAEAVIDLINAKTELSAKSALEQSEGKLSKEISHLRDKLLEIIANIEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D++  +S+     +  + ++I   ++    G+I+R G   VI+G  N GKSS+
Sbjct: 184 VDYPE-DDLEEVTSERGKEAVDKIVSEIDKLLNSANEGKILREGLNTVIVGKPNVGKSSI 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  +  AIVTDIPGTTRDV+   + +EG  +KI DTAGIRETDDIVEK G++++  +
Sbjct: 243 LNALLMETRAIVTDIPGTTRDVIEEYMSIEGIPIKIVDTAGIRETDDIVEKIGVEKSREK 302

Query: 296 VENADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDH 341
           + N+DL +L+       +   K+ I F K+  +I +  K DL +   +E        Y  
Sbjct: 303 ILNSDLTVLVLDSSRQLDAEDKEIIDFIKDKKYIVLLNKIDLDTKLDKESLNKLNSDYII 362

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
            IS+ TG+GL+     IK +  +        + ++ RH   L +    L       E   
Sbjct: 363 DISARTGKGLDRFKEVIKELFFSGEVTSKDVMITNTRHKEALIRAKSSLIAGKGALENTF 422

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D+ + +LR A  +LG+I G    E ++D IFSKFC+GK
Sbjct: 423 AIDLASIDLRDAWKNLGEINGDTVEEDIIDKIFSKFCLGK 462


>gi|240138138|ref|YP_002962610.1| tRNA modification GTPase trmE [Methylobacterium extorquens AM1]
 gi|240008107|gb|ACS39333.1| tRNA modification GTPase trmE [Methylobacterium extorquens AM1]
          Length = 444

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 168/442 (38%), Positives = 263/442 (59%), Gaps = 4/442 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59
           +    +TIFA ++G   +A++++R+SGP+     + +  ++ P PR+ SLR     D R 
Sbjct: 5   LPDRDDTIFAPASGFGRAAVTVVRISGPAAGLALDRLAGRR-PEPRRLSLRRLRDPDSRD 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ L+   P P + TGED AE H+HGG+AV + +L  L ++P  R A  G FSRRAF 
Sbjct: 64  LLDQALVAWLPGPATATGEDMAELHLHGGLAVRSAVLRALGRVPGCRPAEAGAFSRRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL EAE +ADLI +ETE QR  ++  + G L      W +    + +  EA LDF+
Sbjct: 124 NGRIDLTEAEGIADLIDAETEAQRVQALRQLDGALGRQVAAWRETGIDLLAGAEAALDFA 183

Query: 180 EEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E DV        L+     L++ I + ++ G+ GE +R G+ +V++G  NAGKS+L NA
Sbjct: 184 DEGDVDEDGLDAALSGRATALRDAIRAALADGRRGERLREGFCVVLVGAPNAGKSTLLNA 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L+ +D AIV+DIPGTTRD + +  DL G  V + DTAG+RET D +E EG+KRT   + +
Sbjct: 244 LSGRDAAIVSDIPGTTRDTIEVRCDLGGLPVVLVDTAGLRETADAIEAEGVKRTQSRIRS 303

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           ADL+L L   + K +     ++  + + TK+DL      E    IS+ TG GL+ L++ I
Sbjct: 304 ADLVLHLVPADGKADAGRFADVPVLLVRTKTDLAPEVPGEGGLAISAVTGAGLDALLDAI 363

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           ++       +   ++ + +RH   LS+   +L+  +        +++AE+LRLA  +LG+
Sbjct: 364 QAAAQTALGQGD-ALVTRERHREALSRAAAHLDRVATAAAGFPPELVAEDLRLAVRALGE 422

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           + G V VE++LD +F+ FCIGK
Sbjct: 423 VGGHVGVEEMLDRLFAGFCIGK 444


>gi|332995875|gb|AEF05930.1| tRNA modification GTPase [Alteromonas sp. SN2]
          Length = 462

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 153/459 (33%), Positives = 235/459 (51%), Gaps = 25/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + I+R+SGP    + E +       PR A+   F      ++D+
Sbjct: 7   TTDTITAQATAPGRGGVGIVRVSGPYAKAIAE-VLVPTALTPRLATYTPFVDSQQNVIDQ 65

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P SFTGED  E   HGG  V++ +++ +      RLANPGEFS +AF N K+
Sbjct: 66  GIALFFKGPNSFTGEDVLELQGHGGQVVMDMLIDAVLSTGKARLANPGEFSEQAFINDKL 125

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + ++   R ++  + GE S+      D++ H+R ++EA +DF E E+
Sbjct: 126 DLAQAEAIADLIDASSKQAARSALRSLQGEFSTQIQTLSDQIVHLRMYVEAAIDFPE-EE 184

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   S  +V  D+  +   +     Q K G ++R G ++VI G  NAGKSSL NALA +D
Sbjct: 185 IDFLSDGKVSGDLAAILAHLQVVREQAKQGSLLREGMQVVIAGRPNAGKSSLLNALAGRD 244

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRDVL   + + G  V I DTAG+R++ D VEK GI+R +  +  AD +L
Sbjct: 245 SAIVTEIAGTTRDVLKEHIHINGMPVHIIDTAGLRDSPDKVEKIGIERAWQAISEADHVL 304

Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS----------TYTEEYDHL 342
            + +  +                 P+ I    I  K+DL             + +     
Sbjct: 305 FVTDSTTTDIADPYKIWPEFMARLPEGIPTTVIKNKADLSDLQVGLNQVKTEHGDMPVIN 364

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CG 401
           IS+   +G++ L + +   +            + +RHL  L +   Y+ +      D   
Sbjct: 365 ISAKQSDGIDTLRDHLAKTMGFD-TTTEGQFIARRRHLDALEKAYEYVVIGEQQLHDAMA 423

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 424 GELLAEELRLAHQSLCEITGEFTSDDLLGKIFSSFCIGK 462


>gi|325983265|ref|YP_004295667.1| tRNA modification GTPase TrmE [Nitrosomonas sp. AL212]
 gi|325532784|gb|ADZ27505.1| tRNA modification GTPase TrmE [Nitrosomonas sp. AL212]
          Length = 464

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 165/448 (36%), Positives = 249/448 (55%), Gaps = 18/448 (4%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A++T      I +IR+SG +  ++ + I   K P PR ASL  F   +G+I+D+G+++
Sbjct: 20  IAAIATPPGRGGIGVIRISGNNLAKLAQVILG-KLPKPRHASLGKFLDTEGQIIDQGIVL 78

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127
            FP P S+TGED  E H HGG AV+N +L+        RLA PGEF+ RA+ N KIDL++
Sbjct: 79  YFPGPHSYTGEDVLELHGHGGPAVINLLLKSCLSA-GARLAQPGEFTLRAYLNNKIDLIQ 137

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           AES+A LI + T+   R ++  + G  S+     +  L  +R  IEA LDF E+E + N 
Sbjct: 138 AESVAALIEASTQEAARCAVNSLQGHFSARIDVLVGLLITLRMLIEATLDFPEDE-IDNL 196

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
            + ++   +  +   +   +S  + G +++ G +IV+ G  N GKSSL N L ++D AIV
Sbjct: 197 KTLQIREKLDHIVAQLEQTLSGARQGNLLQEGIRIVLAGAPNVGKSSLLNQLVEEDAAIV 256

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           T+IPGTTRD +   + L G  + I DTAG+RET DIVE++GI+RT   ++ A+L+L L +
Sbjct: 257 TEIPGTTRDTIHRTITLGGMPIHIIDTAGLRETGDIVEQKGIERTLAAIKCANLVLRLLD 316

Query: 308 INSKKEIS-------FPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGEGLEEL 354
            +  +  +        P +   I +  K DL +   +           +S+ TG G+E L
Sbjct: 317 SSQHQPAAPDPIKQYIPDDKPQITVFNKIDLRNESPKMEADEHNSIIHLSAKTGAGIELL 376

Query: 355 INKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENLRLA 412
             KI  +   +F         + +RHL  L+Q   +L+ A    E +  L++IAE LRLA
Sbjct: 377 RQKILHLAGWQFNHAGEGIFMARQRHLEALTQASAHLQNAQEYAENEYQLELIAEELRLA 436

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +L  ITG    + LL  IFS FCIGK
Sbjct: 437 QTALSAITGQFTADDLLGEIFSHFCIGK 464


>gi|254673772|emb|CBA09462.1| putative tRNA modification GTPase [Neisseria meningitidis alpha275]
          Length = 448

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 164/453 (36%), Positives = 249/453 (54%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T +    + +IR+SG +   + E +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATASGRGGVGVIRISGKNLLPMAEALCG-KTPKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +              + P  +  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +      +  +      +  RH+  L      L +A+L      +++ AE
Sbjct: 358 GDGLDALKRTLLREAGWQ-GEGEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELFAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|183597177|ref|ZP_02958670.1| hypothetical protein PROSTU_00420 [Providencia stuartii ATCC 25827]
 gi|188023491|gb|EDU61531.1| hypothetical protein PROSTU_00420 [Providencia stuartii ATCC 25827]
          Length = 454

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 158/456 (34%), Positives = 241/456 (52%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              +TI A +T      + I+R+SGP    V + +   K P PR A    F  +D  +LD
Sbjct: 2   QTNDTIVAQATPPGRGGVGILRVSGPKAAVVAQTVLG-KLPKPRYADYLPFRDVDDTVLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ I FP P SFTGED  E   HGG  +++ +L  +  +  +R+ANPGEFS RAF N K
Sbjct: 61  QGIAIFFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTIDGVRIANPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +E   R +M  + G  S+   Q ++ LT +R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAMNSLQGAFSAQIHQMVEALTTLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +  D+    S+ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSDGKIEAKLDDVIADLERVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDI GTTRDVL   + ++G  + + DTAG+RE  D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAGLREASDEVERIGIERAWKEIEQADRV 299

Query: 303 LLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD------HLISS 345
           L +      +    +EI        P+ +    I  K+D      E  +        +S+
Sbjct: 300 LFMLDSTTTDATEPQEIWPEFMARLPETLPVTVIRNKADKTGEKIEFVEDVRYPLIRLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
              +G++ L + +K  +            + +RHL  L     +L             ++
Sbjct: 360 REEKGIDLLRDHLKETM-GFNSNTEGGFLARRRHLQALDAAAMHLAQGHEQLVVARSGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQELSEITGEFTSDDLLGRIFSSFCIGK 454


>gi|170758742|ref|YP_001788985.1| tRNA modification GTPase TrmE [Clostridium botulinum A3 str. Loch
           Maree]
 gi|205829144|sp|B1KUB2|MNME_CLOBM RecName: Full=tRNA modification GTPase mnmE
 gi|169405731|gb|ACA54142.1| tRNA modification GTPase TrmE [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 461

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 161/462 (34%), Positives = 258/462 (55%), Gaps = 26/462 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDG 58
            E +TI AV+T      ISIIR+SG     +   I K K        +  S+RY F ++ 
Sbjct: 2   KEFDTITAVATPVGEGGISIIRISGDKSLDIVSSIFKGKNDRSLDDIKPYSMRYGFIIEK 61

Query: 59  R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               I+D+ L+     P SFT ED+ E + HGG+     IL+EL K    RLA PGEF++
Sbjct: 62  ESKEIIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIKS-GARLAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I S+T++  + +++   G LS       +++  I + IEA 
Sbjct: 121 RAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKIIAHIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D++  + +++  D+  + N I + IS  + G+I+R G   VI+G  N GKSSL
Sbjct: 181 VDYPE-DDLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  ++ AIVT+IPGTTRDV+   ++++G  +KI DTAGIRET+D+VEK G++++  +
Sbjct: 240 LNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVEKSKEK 299

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE----------Y 339
           ++ ADL++ + +++ K      + + F KN  +I +  K DL     EE          Y
Sbjct: 300 IDEADLVIFMLDLSRKIDEEDIEIMDFIKNKKYIVLLNKLDLNKDLNEENHFIKELDSKY 359

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
               S     GL EL   IK++  +   K    I ++ RH   L ++    ++       
Sbjct: 360 IIKTSVKNNSGLNELKECIKNLFFSGEIKSDELIVTNARHQEALIRSRESCIQAIETLSD 419

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +D+ + ++R A   LG+ITG    E ++D IFS+FC+GK
Sbjct: 420 EISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461


>gi|238855502|ref|ZP_04645807.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 269-3]
 gi|260665206|ref|ZP_05866055.1| tRNA modification GTPase TrmE [Lactobacillus jensenii SJ-7A-US]
 gi|282931528|ref|ZP_06337027.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1]
 gi|238831868|gb|EEQ24200.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 269-3]
 gi|260560943|gb|EEX26918.1| tRNA modification GTPase TrmE [Lactobacillus jensenii SJ-7A-US]
 gi|281304335|gb|EFA96438.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1]
          Length = 460

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 237/459 (51%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+RLSG    ++   + K K    + AS    +G       
Sbjct: 5   TEFDTIAAISTPIGEGGISIVRLSGEDAVKIANKLFKGKN-LSKVASHTINYGHIVDPET 63

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ ++ V  +P++FT ED  E + HGGI V N IL+ L K    R+A  GEF++RA
Sbjct: 64  SEVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLK-HGARMAEAGEFTKRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R+++M  + G L         ++    + IE ++D
Sbjct: 123 FVNGRIDLTQAESVMDIVRAKTDKARQVAMNQLEGGLLVKIRTMRQEILDTLANIEVNID 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D    ++K++      +   I+  +     G+I+R+G    I+G  N GKSSL N
Sbjct: 183 YPEY-DADQVTAKQMQETSKSVIEKINRLLKTASEGKIMRSGLATAIVGRPNVGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + ++G  +K+ DTAGI  T+D VEK G++R+   +E
Sbjct: 242 YLTQDDKAIVTDVAGTTRDTLEEYVSIKGVPLKLVDTAGIHHTEDKVEKIGVERSKKAIE 301

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------DHLI 343
            ADL+LLL   +       +K I + K+   I +  KSDL     +E           + 
Sbjct: 302 QADLVLLLLNASEDLTPEDEKLIDYTKDKKRIVVLNKSDLGMKLNKEDLAKKTNAEIVVT 361

Query: 344 SSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    E L++L   I  +  +         + +++R    L +    L ++    + D  
Sbjct: 362 SILKEENLDDLEEAISKLFFSGIHNSNNDVLVTNQRQAGLLEKAKTQLTDVIDAVDNDVP 421

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 422 VDIAQIDFTGAWDTLGEITGDSAPDELITQLFSQFCLGK 460


>gi|304388556|ref|ZP_07370656.1| tRNA modification GTPase TrmE [Neisseria meningitidis ATCC 13091]
 gi|304337453|gb|EFM03622.1| tRNA modification GTPase TrmE [Neisseria meningitidis ATCC 13091]
          Length = 448

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 164/453 (36%), Positives = 249/453 (54%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T +    + +IR+SG +   + E +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATASGRGGVGVIRISGKNLLPMAEALCG-KTPKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +              + P  +  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRAILDTLPSELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G GL+ L   +      +  +      +  RH+  L      L +A+L      ++++AE
Sbjct: 358 GNGLDALKRTLLREAGWQ-GESEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELLAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|260685218|ref|YP_003216503.1| tRNA modification GTPase TrmE [Clostridium difficile CD196]
 gi|260688877|ref|YP_003220011.1| tRNA modification GTPase TrmE [Clostridium difficile R20291]
 gi|260211381|emb|CBA67036.1| putative tRNA modification GTPase [Clostridium difficile CD196]
 gi|260214894|emb|CBE07700.1| putative tRNA modification GTPase [Clostridium difficile R20291]
          Length = 462

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 163/458 (35%), Positives = 249/458 (54%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR- 59
            +TI A++T      I I+R+SG    +V E I K           K +L Y   LD   
Sbjct: 7   DDTIAAIATAPGEGGIGILRISGERALKVAEEIFKSMSGKSIEEYNKRTLIYGNILDNEN 66

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ LL     P S+TGED  E + HGG   V  ILE L    ++RLA  GEF++RAF 
Sbjct: 67  IIDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILE-LILSKDVRLAEAGEFTKRAFL 125

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I ++T++   ++   + G LS    +  DK+T I + +E  +D+ 
Sbjct: 126 NGRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHVEVAIDYP 185

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED+++ + + +      LK +I       + G+I+R G K VI+G  N GKSSL N++
Sbjct: 186 E-EDIEHITYQTLKEKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNSI 244

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTDIPGTTRDV+   ++++G  +KI DTAGIR+TDDIVEK G++++     +A
Sbjct: 245 LGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVEKSKESFTSA 304

Query: 300 DLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEY---------DHLIS 344
           DLI+++ + + K      + +   K+   I +  K+DL     EE             IS
Sbjct: 305 DLIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIEEEKILKYVENNSIIKIS 364

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           +   EG+EEL +KI+S++     K   S + ++ RH   LS+  +    A +  E+    
Sbjct: 365 ALQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAYKSATDALIALEQSMPF 424

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D +  +L+     LG I G    E LLD IF  FCIGK
Sbjct: 425 DFVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 462


>gi|307246406|ref|ZP_07528481.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255391|ref|ZP_07537200.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259841|ref|ZP_07541558.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306852686|gb|EFM84916.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306861648|gb|EFM93633.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866087|gb|EFM97958.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 452

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 157/454 (34%), Positives = 252/454 (55%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           K+TI A +T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G
Sbjct: 2   KDTIVAQATPIGRGGVGILRISGPLAQEVAKEVLGKEL-KPRLANYLPFKEQDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   ++    + K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++G  + I DTAG+RE +D VEK GI+R + E+E AD +LL
Sbjct: 240 AIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVEKIGIQRAWDEIEQADHVLL 299

Query: 305 LKEINSKKEISF-----------PKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFT 347
           + +   +   +F           P+NI    I  K DL   +   +E D      +S+ T
Sbjct: 300 MIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIA 406
             G++ L   +K  +  +         + +RHL  L     +LE   +        +++A
Sbjct: 360 KVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 419 EELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|255657633|ref|ZP_05403042.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-23m63]
          Length = 459

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 163/458 (35%), Positives = 250/458 (54%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR- 59
            +TI A++T      I I+R+SG    +V E I K           K +L Y   +D   
Sbjct: 4   DDTIAAIATAPGEGGIGILRISGERALKVAEEIFKSMSGKSIEEYNKRTLIYGNIVDKEN 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ LL     P S+TGED  E + HGG   V  ILE L    ++RLA  GEF++RAF 
Sbjct: 64  IIDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILE-LILSKDVRLAEAGEFTKRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I ++T++   ++   + G LS    +  DK+T I + +E  +D+ 
Sbjct: 123 NGRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHVEVAIDYP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED+++ + + + +    LK +I       + G+I+R G K VI+G  N GKSSL N++
Sbjct: 183 E-EDIEHITYQTLKDKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNSI 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTDIPGTTRDV+   ++++G  +KI DTAGIR+TDDIVEK G++R+     +A
Sbjct: 242 LGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVERSKESFTSA 301

Query: 300 DLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEY---------DHLIS 344
           DLI+++ + + K      + +   K+   I +  K+DL     EE             IS
Sbjct: 302 DLIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIEEEKILKYVENNSIIKIS 361

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           +   EG+EEL +KI+S++     K   S + ++ RH   LS+  +    A +  E+    
Sbjct: 362 ALQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAYKSATDALIALEQSMPF 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D +  +L+     LG I G    E LLD IF  FCIGK
Sbjct: 422 DFVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 459


>gi|313904719|ref|ZP_07838093.1| tRNA modification GTPase TrmE [Eubacterium cellulosolvens 6]
 gi|313470512|gb|EFR65840.1| tRNA modification GTPase TrmE [Eubacterium cellulosolvens 6]
          Length = 460

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 150/457 (32%), Positives = 244/457 (53%), Gaps = 23/457 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFG---LDGR 59
            +TI A+ST   PS I I+RLSGP   ++ + +    K K    +      +G    +G 
Sbjct: 6   SDTIVAISTAMAPSGIGIVRLSGPDAIKIADRVYVNPKGKKLSGQNGYTIHYGNVCENGE 65

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ L ++  +P S+TGED+ EF  HGG+     ILE +      R A PGEFSRRAF 
Sbjct: 66  VIDETLAMLMRAPHSYTGEDTVEFDCHGGVLATKRILEAIV-HAGARPAEPGEFSRRAFL 124

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+++ +   R +   + G +S        KL H  + IEA LD  
Sbjct: 125 NGRIDLTQAEAVMDIIAAKNDHALRSAQHQLKGSVSGKISDIRQKLLHETAHIEAALDDP 184

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +  +  +++   I+  +  +   +     G+ +  G K VI+G  NAGKSSL N L
Sbjct: 185 EHMSLDGYV-EDMRQVIMAQRKALERLLESADSGKFMTEGIKTVIVGKPNAGKSSLLNLL 243

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTDI GTTRD+L   ++++G  +++ DTAGIR+  D++EK G++R   +V++A
Sbjct: 244 IGEEKAIVTDIAGTTRDILEEQINIKGITLRLLDTAGIRDASDVIEKIGVERAKEQVKDA 303

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISS 345
           DL+L + +       N  + +   K+  F+ I  K+DL +  T E            +S+
Sbjct: 304 DLVLYVVDGSVALDDNDFEIMKLIKDRKFVVILNKNDLSTIVTSEELEQATGTPVISMSA 363

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
              EG++EL ++I+ +  +        I  ++ RH   + + +R L +     + D   D
Sbjct: 364 KHSEGIDELEDQIEKMFFHGGISFNDEIYITNVRHKTCIEEAIRSLGLVLQSMDDDMPED 423

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + +L  A  SLG+ITG    E L++ IFS FC+GK
Sbjct: 424 FWSIDLMGACDSLGQITGETTSEDLVNEIFSSFCMGK 460


>gi|254671681|emb|CBA09438.1| putative tRNA modification GTPase [Neisseria meningitidis alpha153]
          Length = 448

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 164/453 (36%), Positives = 249/453 (54%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T +    + +IR+SG +   + E +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATASGRGGVGVIRISGKNLLPMAEALCG-KTPKPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V++ +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +              + P  +  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +      +  +      +  RH+  L      L +A+L      +++ AE
Sbjct: 358 GDGLDALKRTLLREAGWQ-GESEGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELFAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|240114777|ref|ZP_04728839.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID18]
 gi|268600426|ref|ZP_06134593.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID18]
 gi|268584557|gb|EEZ49233.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID18]
          Length = 448

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 165/453 (36%), Positives = 250/453 (55%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCG-KTPEPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI +      RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEGLITLRMLVEAALDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +    +N K  +   + P ++  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +    +    +      +  RH+  L      L +A L      +++ AE
Sbjct: 358 GDGLDALKRTLL-CEAGWQGESEGLFLARTRHVNALKAAQEELSLAVLCGNHQ-IELFAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|15616624|ref|NP_244930.1| tRNA modification GTPase TrmE [Bacillus halodurans C-125]
 gi|14195295|sp|Q9RCA7|MNME_BACHD RecName: Full=tRNA modification GTPase mnmE
 gi|5672642|dbj|BAA82680.1| 77%-identity [Bacillus halodurans]
 gi|10176687|dbj|BAB07781.1| thiophen and furan oxidation [Bacillus halodurans C-125]
          Length = 458

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 152/459 (33%), Positives = 246/459 (53%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI I+RLSG    Q+ + + + KKP     S    +G        
Sbjct: 2   EFDTIAAISTALGEGAIGIVRLSGDEAVQLADRVYRGKKPLQEVPSHTIVYGHIVDPKTD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ ++ V  +P +FT ED  E + HGG+  VN +L+ L      RLA PGEF++RAF
Sbjct: 62  EIIDEVMVSVLRAPRTFTREDVIEINCHGGLVSVNRVLQ-LVLNHGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE + DLI ++T+    ++++ + G LS+        L    + +E ++D+
Sbjct: 121 LNGRIDLSQAEGVIDLIRAKTDRAMNVALKQVEGRLSTKISSLRQALLETVAHVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D +  +   + +   F++ +I   +   + G+I+R G   VI+G  N GKSSL N+
Sbjct: 181 PEY-DAETMTLDMLKDRAQFVRKEIDKLLMTAQQGKILREGLSTVIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVTDIPGTTRDV+   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 240 LVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSREVLKE 299

Query: 299 ADLILLLK----EINSKKEISFPK--NIDFIFIGTKSDLYSTY---------TEEYDHLI 343
           A+LILL+     E++ + E  F     ++ I I  K+D+                     
Sbjct: 300 AELILLVLNFGEELSKEDEALFEAISGMEAIVIVNKTDVEQKIDLTRVRELAAGRPVITT 359

Query: 344 SSFTGEGLEELINKIKSILSN-KFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    +G++EL   I S+      +    +  S+ RH+  L Q  R +E A    E D  
Sbjct: 360 SIVQDQGIDELEAAIASLFFESGIESGDVTYVSNSRHIALLEQAKRAVEDALEAIEMDVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++  A   LG+I G    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDITRAWELLGEIIGDSVHESLIDQLFSQFCLGK 458


>gi|325294202|ref|YP_004280066.1| tRNA modification GTPase TrmE [Agrobacterium sp. H13-3]
 gi|325062055|gb|ADY65746.1| tRNA modification GTPase TrmE [Agrobacterium sp. H13-3]
          Length = 443

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 214/443 (48%), Positives = 303/443 (68%), Gaps = 4/443 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M    +TI+A+S+GALP+ ++IIR+SGP  F+    + ++  P PRKA L      +  I
Sbjct: 2   MPASADTIYALSSGALPAGVAIIRISGPGAFEAFVTLTRRDLPAPRKAVLCSIRNRNNEI 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+IVF +P SFTGE+  E H HG  AVV  I  EL  +   R A+ GEFSRRAFEN
Sbjct: 62  IDQALMIVFSAPNSFTGENCIEIHSHGSRAVVASIFAELELLEGFRPADAGEFSRRAFEN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DLLE E LADL+ +ETEMQRRL++E  +G+LS+LY  W  +LT  R+ IEA+LDF++
Sbjct: 122 GKMDLLEIEGLADLLQAETEMQRRLAVEQSTGKLSALYDGWAGRLTRARALIEAELDFAD 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EEDV +  + +V + +  L ++I++H+  G   EIIR+G+K+ ++G  NAGKS+L NAL+
Sbjct: 182 EEDVPDSVAAQVWDAMTQLHSEITNHLQNGGSSEIIRDGFKVALVGEPNAGKSTLLNALS 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +DVAIVTDI GTTRDVL++D++L+GYLV+I DTAGIRET D+VEKEG++R  L  E AD
Sbjct: 242 GRDVAIVTDIAGTTRDVLSVDINLDGYLVRIFDTAGIRETQDVVEKEGVRRAVLTAETAD 301

Query: 301 LILLLKEINS--KKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHLISSFTGEGLEELINK 357
           LIL+L++ +S  K+ I   +N   + + TK+ + S+  +  +D  IS+  G GL+EL   
Sbjct: 302 LILILQDNDSTLKQSIISLENARHLHLRTKTAISSSTVDAVFDLAISAREGVGLDELRLL 361

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           IK  + ++       +P+  RH   L +T+ Y+  A LN +   L I +E LRLA+ SLG
Sbjct: 362 IKGEIESRVGVAQTLVPARARHKKRLEETLNYVSDA-LNSETMDLAIRSEYLRLAATSLG 420

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           +ITG VDVE LL +IFS+FCIGK
Sbjct: 421 RITGRVDVEDLLGVIFSEFCIGK 443


>gi|27469335|ref|NP_765972.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis ATCC
           12228]
 gi|57865942|ref|YP_187603.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis RP62A]
 gi|293367584|ref|ZP_06614237.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|32171815|sp|Q8CMN5|MNME_STAES RecName: Full=tRNA modification GTPase mnmE
 gi|81675521|sp|Q5HS36|MNME_STAEQ RecName: Full=tRNA modification GTPase mnmE
 gi|27316885|gb|AAO06060.1|AE016752_93 putative thiophene and furan oxidation protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|57636600|gb|AAW53388.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis RP62A]
 gi|291318297|gb|EFE58690.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329735775|gb|EGG72056.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU028]
          Length = 459

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 148/459 (32%), Positives = 245/459 (53%), Gaps = 23/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           + +TI ++ST     AI I+RLSGP   ++ + + K KK      +    +G        
Sbjct: 2   DFDTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETN 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF
Sbjct: 62  ETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV++ ++  +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N 
Sbjct: 181 PEYDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNN 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  
Sbjct: 241 LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSE 300

Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYST---------YTEEYDHLI 343
           ADLIL +   N              KN D I I  K+DL              +      
Sbjct: 301 ADLILFVLNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S    EG++EL  +IK +      +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|301613774|ref|XP_002936375.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
           [Xenopus (Silurana) tropicalis]
          Length = 491

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 181/470 (38%), Positives = 275/470 (58%), Gaps = 37/470 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFF-GLDGRILD 62
           ++TIFA+S+G     +S+IR SGP+     + +   K+ P PR+ +L        G +LD
Sbjct: 25  RDTIFALSSGHGKCGVSVIRTSGPASGDALQLLTGWKQLPPPRRVTLTSLLCPTTGELLD 84

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +GL++ F  P+SFTGED  E+HVHGG AVV G+L+ L  +  LR A PGEF++RAF+NGK
Sbjct: 85  RGLVLWFSGPKSFTGEDCCEYHVHGGPAVVMGVLQALGTVQMLRPAEPGEFTKRAFQNGK 144

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL EAE L DLI +ETE+QRR ++  MSGEL  LY +W  +L    + +EA +DFSE++
Sbjct: 145 LDLTEAEGLGDLIHAETEIQRRQALRQMSGELGQLYQKWSHRLVTALAHVEAFIDFSEDD 204

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +V+      V +++  L+ ++  H+   + GE +R+G  +V+ G +NAGKSSL N  ++K
Sbjct: 205 NVEENVLTSVDSEVKNLQEELEDHLKDSRRGERLRDGLHLVLAGATNAGKSSLLNLTSQK 264

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             AIV+ IPGTTRDV+   L++ GY V +SDTAG+R+++D VEKEG++R    ++NAD++
Sbjct: 265 PAAIVSPIPGTTRDVVETVLNIGGYPVIMSDTAGLRDSEDPVEKEGVRRAKERLDNADIL 324

Query: 303 LLLKEINS------------KKEISFP----KNIDFIFIGTKSDLYSTYTEEYDH----- 341
           + + + +             K  +SFP    K  + + +  KSDL               
Sbjct: 325 IAVVDASKVPITRISILAHLKSLLSFPSSEGKLREVLLVLNKSDLLDPPGHAKVQELCKD 384

Query: 342 -------LISSFTGEGLEE----LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                   +S  TG+G+ +    L  K++ I  +     P    +  RH  HL++ +  L
Sbjct: 385 PELPTACFLSCQTGQGVGDFIYILKQKLEKICGDPLHGAPS--LTQTRHRLHLNKCLEAL 442

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E  ++  +   L + AE LR++   LG ITG V VE +LDIIF  FCIGK
Sbjct: 443 EQYTIYREQ-DLVLAAEELRISYRELGAITGRVGVEGILDIIFRDFCIGK 491


>gi|229164435|ref|ZP_04292363.1| tRNA modification GTPase mnmE [Bacillus cereus R309803]
 gi|228619040|gb|EEK75938.1| tRNA modification GTPase mnmE [Bacillus cereus R309803]
          Length = 458

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 246/459 (53%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI+I+R+SG    +    I K K       S    +G        
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKD-LTEVPSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+   ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++    +++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATYVRTEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLI 343
           ADL+L++        N  +++    +  DFI I  K+DL      E              
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELSAGNRVITT 359

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    +G++EL N I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELENAIAELFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|152988592|ref|YP_001351679.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PA7]
 gi|166234809|sp|A6VF44|MNME_PSEA7 RecName: Full=tRNA modification GTPase mnmE
 gi|150963750|gb|ABR85775.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PA7]
          Length = 455

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 151/446 (33%), Positives = 236/446 (52%), Gaps = 25/446 (5%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPES 74
                + I+R+SGP   ++   +  ++   PR A    F    G+++D+GL + FP P S
Sbjct: 15  PGRGGVGIVRVSGPLAGRIAVEVSGREL-KPRHAHYGPFLDGGGQVIDEGLSLYFPGPNS 73

Query: 75  FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134
           FTGED  E   HGG  V++ +++   ++   R A PGEFS RAF N K+DL +AE++ADL
Sbjct: 74  FTGEDVLELQGHGGPVVLDLLVQRCLEL-GARQARPGEFSERAFLNDKLDLAQAEAIADL 132

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           I + +E   R ++  + GE S       ++L  +R ++EA +DF E E++   +   VL 
Sbjct: 133 IEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPE-EEIDFLADGHVLG 191

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +  ++ ++S+   +   G ++R+G  +VI G  NAGKSSL NALA ++ AIVTDI GTT
Sbjct: 192 LLEKVRTELSTVRREASQGALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 251

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           RDVL   + ++G  + + DTAG+R+T+D VEK G++R    +  AD +LL+ +  + +  
Sbjct: 252 RDVLREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVERALKAIGEADRVLLVVDATAPEAA 311

Query: 315 S-----------FPKNIDFIFIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELIN 356
                        P+      I  K+D       L  +        +S+ T  GLE L  
Sbjct: 312 DPFSLWPEFLDQRPEPGKVTLIRNKADLSTEAIGLEESADGHVTITLSARTNAGLELLRE 371

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASV 414
            +K+ +  + +       + +RHL  L      LE   A L     G +++AE+LR A  
Sbjct: 372 HLKACMGFE-QTAESGFSARRRHLEALRLAGNALEHGHAQLIHNGAG-ELLAEDLRQAQQ 429

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            LG+ITG    + LL  IFS FCIGK
Sbjct: 430 HLGEITGAFTPDDLLGRIFSSFCIGK 455


>gi|307547060|ref|YP_003899539.1| tRNA modification GTPase TrmE [Halomonas elongata DSM 2581]
 gi|307219084|emb|CBV44354.1| tRNA modification GTPase TrmE [Halomonas elongata DSM 2581]
          Length = 456

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 152/456 (33%), Positives = 235/456 (51%), Gaps = 23/456 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + ++TI A++T      + IIR+SG +   + E +     P PR+A    F G +G +LD
Sbjct: 6   YAQDTIAALATPPGQGGVGIIRVSGSASRSIAESMLGHCPP-PRQAFYGPFRGENG-MLD 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + F  P SFTGED  E   HGG  +++ +LE   ++   RLA PGEFS RAF N K
Sbjct: 64  EGIALFFEGPNSFTGEDVLELQGHGGTVIMDLLLEHCVQL-GARLARPGEFSERAFLNDK 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +      ++  + GE S      + +L  +R ++EA +DF E E
Sbjct: 123 LDLAQAEAIADLIEASSRGAAENALRSLQGEFSKRVEALVQELIELRMYVEAAIDFPE-E 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   +   V   +  ++  ++        G ++R G  +VI G  NAGKSSL NAL ++
Sbjct: 182 EIDFLADGHVAGKLASIRARLADVRDSAGQGALMREGMSVVIAGRPNAGKSSLLNALTEQ 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVT+I GTTRDVL   + L+G  + + DTAG+R+T D VEK G+ R + E+E AD +
Sbjct: 242 DTAIVTEIEGTTRDVLREHIHLDGMPLHVIDTAGLRDTPDAVEKIGVARAWSEIEKADRV 301

Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           LL+ +  +   +                     +  K D           T      +S+
Sbjct: 302 LLMVDATTTDALDPMSIWPEFVQRLADPSRLTLVRNKVDTSQEPPGLDLSTATPIVRLSA 361

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DI 404
            TG+G++ L   +K I+            + +RHL  L +    LE         G  ++
Sbjct: 362 KTGQGVDNLKEHLKDIM-GFSTTTEGRFSARRRHLDALDRAATALENGDAQLSGHGAGEL 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE+LR A  +LG+ITG    + LL  IF  FCIGK
Sbjct: 421 LAEDLRDAQQALGEITGEFSADDLLGEIFGSFCIGK 456


>gi|307731534|ref|YP_003908758.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1003]
 gi|307586069|gb|ADN59467.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1003]
          Length = 464

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 151/465 (32%), Positives = 241/465 (51%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G +  Q        +   PR AS   F   
Sbjct: 2   LTTDFDPIVAIATAPGRGGIGVVRISFGRTGEAAAQPLMQALTGQPLAPRHASYVPFLDG 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGEF
Sbjct: 62  SGNPLDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++++  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHTLVEEVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  ++S +++ + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPE-EEIDFLEAADARGKLARIRERLASVLAEARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R+T+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY------- 339
            E+E AD++L L +        +      FP  +  + +  K+DL     +         
Sbjct: 301 SEIERADVVLHLLDARTGMTAEDETIAKRFPAGVPVVRVLNKTDLVGLPPQTRALDVDLD 360

Query: 340 --DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
             +  +S+  G+G+  L +++  I   +         + +RHL  L     +L  A+ + 
Sbjct: 361 LSEVRLSAKQGDGVSLLRDELLRIAGWQAG-AESVYLARERHLIALRAAQEHLATAAAHA 419

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464


>gi|242372605|ref|ZP_04818179.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
           M23864:W1]
 gi|242349660|gb|EES41261.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
           M23864:W1]
          Length = 459

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 147/459 (32%), Positives = 244/459 (53%), Gaps = 23/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           + +TI ++ST     AI I+RLSGP   ++ + + K KK      +    +G        
Sbjct: 2   DFDTITSISTPMGEGAIGIVRLSGPQAIEIGDTLYKGKKKLAEVDTHTINYGHIVDPETN 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF
Sbjct: 62  ETVEEVMISVLRAPKTFTKEDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++M  + G LS L       +  I + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKGQRQSILEILAQVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N 
Sbjct: 181 PEYDDVEDATTEFLLEQSKNIKEEINRLLETGTQGKIMREGLSTVIVGRPNVGKSSMLNN 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  
Sbjct: 241 LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSE 300

Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL---------YSTYTEEYDHLI 343
           ADLIL +   N              KN D I I  K+DL              +      
Sbjct: 301 ADLILFVLNNNEPLTEDDQTLYEVIKNEDVIVIINKTDLEQRLDMNEVKEMIGDMPLIQT 360

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S    EG++EL  +I+ +      +    +  S+ RH+  L Q    ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARHSIQDAIDAAESGVP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|188587519|ref|YP_001919064.1| tRNA modification GTPase TrmE [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|205415781|sp|B2A470|MNME_NATTJ RecName: Full=tRNA modification GTPase mnmE
 gi|179352206|gb|ACB86476.1| tRNA modification GTPase TrmE [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 458

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 158/459 (34%), Positives = 253/459 (55%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDG 58
            ++TI A+ST      I++IR+SGP      + I +  +      + + + G        
Sbjct: 2   TEDTIAALSTPPGEGGIAVIRVSGPDSQNKVKQIFRSSRTDGNFNNKKMYHGQIVSPETN 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           RILD+ L++    P ++T ED  E H HGG+  V  IL+ L     +R A PGEF++RAF
Sbjct: 62  RILDEVLVVFMNKPYTYTCEDVVEIHCHGGMVPVKEILQ-LLFSYGIRPAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE + DLI+S+T   + +++  + G L     +  D L  + + +EA +DF
Sbjct: 121 LNGRLDLTQAEGVMDLITSKTNNLKNVAINQLQGNLKQKIDRLRDDLVSVMANLEARIDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            + ED+      E+ + I   K DI++ I+    G+IIR G K VI+G  N GKSSL N 
Sbjct: 181 PD-EDIDVEDYHELKHRIDNAKVDINNLIASYDKGKIIREGIKTVIVGRPNVGKSSLLNL 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVT+IPGTTRDVL   ++L+G  ++I DTAGIRE++D VE+ G+KRT   +E 
Sbjct: 240 LLGEERAIVTEIPGTTRDVLEEVINLKGIPLRIIDTAGIRESEDKVEQIGVKRTRDSMEQ 299

Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDH--------LI 343
           AD+IL++ + +       K+ ++  ++   + +  K+DL+     +E D          I
Sbjct: 300 ADIILVVIDSSQELSQEDKQILTMAQDKTSLLVLNKTDLHEKLDIDEIDKLVSQIPKVRI 359

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCG 401
           S+   EGL++L   I  ++   +  +    + +  RH + L +    L  A  N K +  
Sbjct: 360 SALKEEGLDKLEEHISELVFGGQVMQTEELVITKARHFHSLDKVKEALSSAEENIKAEMS 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D+IA +++ A   LG+ITG    E+L+D IF+ FCIGK
Sbjct: 420 EDLIAIDIKEAYDYLGEITGETASEELVDRIFNDFCIGK 458


>gi|296452686|ref|ZP_06894377.1| tRNA modification GTPase TrmE [Clostridium difficile NAP08]
 gi|296880062|ref|ZP_06904031.1| tRNA modification GTPase TrmE [Clostridium difficile NAP07]
 gi|296258468|gb|EFH05372.1| tRNA modification GTPase TrmE [Clostridium difficile NAP08]
 gi|296428929|gb|EFH14807.1| tRNA modification GTPase TrmE [Clostridium difficile NAP07]
          Length = 462

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 163/458 (35%), Positives = 250/458 (54%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR- 59
            +TI A++T      I I+R+SG    +V E I K           K +L Y   +D   
Sbjct: 7   DDTIAAIATAPGEGGIGILRISGERALKVAEEIFKSMSGKSIEEYNKRTLIYGNIVDKEN 66

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ LL     P S+TGED  E + HGG   V  ILE L    ++RLA  GEF++RAF 
Sbjct: 67  IIDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILE-LILSKDVRLAEAGEFTKRAFL 125

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I ++T++   ++   + G LS    +  DK+T I + +E  +D+ 
Sbjct: 126 NGRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHVEVAIDYP 185

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED+++ + + + +    LK +I       + G+I+R G K VI+G  N GKSSL N++
Sbjct: 186 E-EDIEHITYQTLKDKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNSI 244

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTDIPGTTRDV+   ++++G  +KI DTAGIR+TDDIVEK G++R+     +A
Sbjct: 245 LGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVERSKESFTSA 304

Query: 300 DLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEY---------DHLIS 344
           DLI+++ + + K      + +   K+   I +  K+DL     EE             IS
Sbjct: 305 DLIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIEEEKILKYVENNSIIKIS 364

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           +   EG+EEL +KI+S++     K   S + ++ RH   LS+  +    A +  E+    
Sbjct: 365 ALQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAYKSATDALIALEQSMPF 424

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D +  +L+     LG I G    E LLD IF  FCIGK
Sbjct: 425 DFVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 462


>gi|251811361|ref|ZP_04825834.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874718|ref|ZP_06283597.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis SK135]
 gi|251805110|gb|EES57767.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296434|gb|EFA88949.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis SK135]
          Length = 459

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 148/459 (32%), Positives = 245/459 (53%), Gaps = 23/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           + +TI ++ST     AI I+RLSGP   ++ + + K KK      +    +G        
Sbjct: 2   DFDTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETN 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF
Sbjct: 62  ETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV++ ++  +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N 
Sbjct: 181 PEYDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNN 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  
Sbjct: 241 LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSE 300

Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYST---------YTEEYDHLI 343
           ADLIL +   N              KN D I I  K+DL              +      
Sbjct: 301 ADLILFVLNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S    EG++EL  +IK +      +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEILGESASDELIDQLFSQFCLGK 459


>gi|329724170|gb|EGG60688.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU144]
          Length = 459

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 148/459 (32%), Positives = 245/459 (53%), Gaps = 23/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           + +TI ++ST     AI I+RLSGP   ++ + + K KK      +    +G        
Sbjct: 2   DFDTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETN 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF
Sbjct: 62  ETVEEVMVSVLRAPKTFTREDITEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV++ ++  +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N 
Sbjct: 181 PEYDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNN 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  
Sbjct: 241 LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSE 300

Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSD---------LYSTYTEEYDHLI 343
           ADLIL +   N              KN D I I  K+D         L     +      
Sbjct: 301 ADLILFVLNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S    EG++EL  +IK +      +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|307261970|ref|ZP_07543627.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306868331|gb|EFN00151.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 452

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 156/454 (34%), Positives = 251/454 (55%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           K+TI A +T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G
Sbjct: 2   KDTIVAQATPIGRGGVGILRISGPLAQEVAKEVLGKEL-KPRLANYLPFKDQDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  +   ++    + K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL
Sbjct: 240 AIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLL 299

Query: 305 LKEINSKKEISF-----------PKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFT 347
           + +   +   +F           P++I    I  K DL   +   +E D      +S+ T
Sbjct: 300 MIDSTEQTAEAFKTEWADFLAKLPQSIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIA 406
             G++ L   +K  +  +         + +RHL  L     +LE   +        +++A
Sbjct: 360 KVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 419 EELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|242243258|ref|ZP_04797703.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis W23144]
 gi|242233207|gb|EES35519.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis W23144]
          Length = 459

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 148/459 (32%), Positives = 245/459 (53%), Gaps = 23/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           + +TI ++ST     AI I+RLSGP   ++ + + K KK      +    +G        
Sbjct: 2   DFDTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETN 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF
Sbjct: 62  ETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV++ ++  +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N 
Sbjct: 181 PEYDDVEDATTDFLLEQSKRIKEEINRLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNN 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  
Sbjct: 241 LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSE 300

Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYST---------YTEEYDHLI 343
           ADLIL +   N              KN D I I  K+DL              +      
Sbjct: 301 ADLILFVLNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S    EG++EL  +IK +      +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|240122615|ref|ZP_04735571.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID332]
 gi|268681207|ref|ZP_06148069.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
           PID332]
 gi|268621491|gb|EEZ53891.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
           PID332]
          Length = 448

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 164/453 (36%), Positives = 250/453 (55%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI AV+T      + +IR+SG +   + + +C  K P PR A+   F   DG+ 
Sbjct: 1   MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCG-KTPEPRVATYADFTDADGQA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI +      RL++  + G+ S      ++ L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAALDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +V+IVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVSIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFT 347
           + L+L +    +N K  +   + P ++  I I +KSDL++          E    +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+GL+ L   +    +    +      +  RH+  L      L +A L      +++ AE
Sbjct: 358 GDGLDALKRTLL-CEAGWQGESEGLFLARTRHVNALKAAQEELSLAVLCGNHQ-IELFAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|228942633|ref|ZP_04105165.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975563|ref|ZP_04136115.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982199|ref|ZP_04142488.1| tRNA modification GTPase mnmE [Bacillus thuringiensis Bt407]
 gi|228777551|gb|EEM25829.1| tRNA modification GTPase mnmE [Bacillus thuringiensis Bt407]
 gi|228784173|gb|EEM32200.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817059|gb|EEM63152.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943282|gb|AEA19178.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 458

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 247/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +  + I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKDLTEVSSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G+   ++    + +E ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETLAHVEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLIS 344
           DL+L++        N  +++    +  DFI I  K+DL      E              S
Sbjct: 301 DLVLVVVNYSEALTNEDEDLFHAVQGKDFIVIVNKTDLPQAIDMERVTELAEGNRVITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    +
Sbjct: 361 LIEEQGIDELEKAIADLFFEGTIDSTDMTYVSNARHIGLLTQAGQTIGDAIEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|190171192|gb|ACE63666.1| ThdF [Enterobacter cloacae]
          Length = 439

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 152/442 (34%), Positives = 239/442 (54%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDSDGTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNDVMTDLEAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG++
Sbjct: 299 TTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
           +L N +K  +      +     + +RHL  L +  R+LE            +++AE LRL
Sbjct: 359 DLRNHLKQSMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQNLSEITGEFTSDDLLGRIF 439


>gi|190171248|gb|ACE63694.1| ThdF [Escherichia vulneris]
          Length = 439

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 151/442 (34%), Positives = 238/442 (53%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V + +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGHKAREVAQAVLG-KLPKPRYADYLPFNDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNGVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+DL       S         +S++TGEG++
Sbjct: 299 TTDAVDPADIWPDFIARLPAKLPITVVRNKADLTGETLGISEVNGHSLVRLSAYTGEGID 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +    + +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFDTQ-MEGGFLARRRHLQALELAAEHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  SL +ITG    + LL  IF
Sbjct: 418 AQQSLSEITGEFTSDDLLGRIF 439


>gi|119475232|ref|ZP_01615585.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2143]
 gi|119451435|gb|EAW32668.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2143]
          Length = 465

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 246/465 (52%), Gaps = 32/465 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD------ 57
           + +TI A++T      + I+R+SGP+   +   I   +   PR AS   F+  +      
Sbjct: 5   DTDTIVAIATAPGRGGVGIVRVSGPNSKAIASLITDSQL-APRYASYGAFYEANSTINTR 63

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             R++D GL + FP P SFTGED  E   HGG  +++ +L E+ K+   RLA PGEFS R
Sbjct: 64  SDRVIDYGLTLFFPGPNSFTGEDVLELQAHGGPVILDYLLSEIIKL-GARLARPGEFSER 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF N K+DL +AE++ADLI S +    R ++  + G+ S      +  + ++R ++EA +
Sbjct: 123 AFLNNKMDLTQAEAIADLIDSASLQAARNAVRSLQGQFSKKIMSLVSAVVNLRVYVEAAI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF E E++   +  +V +D+  + N ++   S+ K G +++ G  +VI G  NAGKSSL 
Sbjct: 183 DFPE-EEIDFLADGKVSSDLDTILNQLNRVFSEAKQGSLVQEGMTVVIAGKPNAGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL+ +D AIVT+I GTTRDVL   + ++G  + I DTAG+R++ DI+E+EGI+R + E+
Sbjct: 242 NALSGRDSAIVTEIEGTTRDVLREHIQIDGMPLHIIDTAGLRDSPDIIEQEGIRRAWEEI 301

Query: 297 ENADLILLLKEINSKKEIS---------------FPKNIDFIFIGTKSDLYSTYTEEYD- 340
             AD ILL+ +  + +EI                     +   +  K+DL     E  + 
Sbjct: 302 NRADRILLVVDSTTSREIDPVKLIGDLGPDISSKLSSLANVTIVHNKADLSGQAVEIVEA 361

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                 +S+   +G+E L   +K+ +            + +RHL  L+     L      
Sbjct: 362 EQTLITLSAKDDQGIELLRQHLKACMGYD-GAGEGGFTARRRHLDALTNAQEALHAGQQQ 420

Query: 397 EKDCGL-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               G  +++AE+LR    +L +ITG    + LL  IFS FCIGK
Sbjct: 421 LLSYGAGELLAEDLRHCQNALSEITGEFSSDDLLGEIFSSFCIGK 465


>gi|71909809|ref|YP_287396.1| tRNA modification GTPase TrmE [Dechloromonas aromatica RCB]
 gi|123626188|sp|Q477Q5|MNME_DECAR RecName: Full=tRNA modification GTPase mnmE
 gi|71849430|gb|AAZ48926.1| tRNA modification GTPase trmE [Dechloromonas aromatica RCB]
          Length = 448

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 171/452 (37%), Positives = 250/452 (55%), Gaps = 20/452 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A++T      + +IR+SG +       +  +K P PR ASL  F   DG  +D 
Sbjct: 2   KSDTIAAIATAPGRGGVGVIRISGSNLLPFAFALT-EKTPKPRYASLADFKAADGSTIDT 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP+P+SFTGED  E   HGG  V+  +L     +   RLA PGEFSRRAF NGK+
Sbjct: 61  GLLLYFPNPQSFTGEDVLELQGHGGPVVMQMLLARCLDL-GARLAEPGEFSRRAFLNGKM 119

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + T    R ++  + GE S   G+  D+L ++R  +EA LDF E ED
Sbjct: 120 DLAQAEAVADLIDAATASAARSAVRSLQGEFSRAIGELNDELINLRMLVEATLDFPE-ED 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +    +      +  L+  ++    +   G+++++G  +V+ G  N GKSSL N LA  D
Sbjct: 179 IDFLKAANAFGRLERLQLKLAEIFDRAGQGKLLQSGLHVVLAGQPNVGKSSLLNRLAGDD 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIVT I GTTRD L   + +EG  + I DTAG+RETDD VEK GI+R++ E+E +D++L
Sbjct: 239 LAIVTPIAGTTRDALRSTIQIEGIPLHIIDTAGLRETDDEVEKIGIERSWKEIERSDVVL 298

Query: 304 LLKEI-----NSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEG 350
           LL +       S +EI    P  +  I +  K DL     E +D         S+   +G
Sbjct: 299 LLVDARTGVSESDREILARLPDRLQRITVYNKIDLTHRAAERHDEANGTAISLSAKANQG 358

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC--GLDIIAEN 408
           +E L  ++  I    + +      + +RHL  LS    ++  A    +     L++ AE 
Sbjct: 359 IELLRQELLRIA--GWHQAEDVFIARERHLRALSAAQEHVAAARNVVEGALPALELFAEE 416

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LRLA  SLG+ITG    + LL +IFS+FCIGK
Sbjct: 417 LRLAQQSLGEITGEFTADDLLGVIFSRFCIGK 448


>gi|90415379|ref|ZP_01223313.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2207]
 gi|90332702|gb|EAS47872.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2207]
          Length = 454

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 150/458 (32%), Positives = 249/458 (54%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M +  ++I A++T      + I+R+SGP        I   K   PR+A+  +F G++G +
Sbjct: 1   MQNSLDSIVAIATAPGRGGVGIVRVSGPDISAFTSAITG-KTLLPRQATFSHFNGVNGEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ I FP+P SFTGE   E   HGG  +++ +++   ++   R A PGEFS RAF N
Sbjct: 60  IDEGVAIYFPAPASFTGEHVLELQGHGGPVILDALVQRCVQL-GARPARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G+ S L    +++L +IR ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIDATSIQAARCAVRSLQGDFSRLVNGLVERLINIRLYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   + + +  ++  L+  +++ +SQ + G ++R+G  +V+ G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADERLSLNLQKLREALTNTLSQAQQGSLLRDGMTVVLAGKPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVT   GTTRDVL   + L+G  + I DTA +R++DD +E EGI+R +LE+E AD
Sbjct: 238 GRDAAIVTPKAGTTRDVLRETITLDGMPLHIVDTARLRDSDDEIELEGIRRAWLEIEQAD 297

Query: 301 LILLLKEINSKKEISFP------------KNIDFIFIGTKSDLY-----STYTEEYDHLI 343
            +L L + N                           +  K D           +  +  I
Sbjct: 298 QLLFLVDANESDNPDLAAIWPEYFARYGGAKQPITVVLNKIDESGHQPGRQVGDANNFAI 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402
           S+    G+++L+  ++S +    ++      + +RHL  L + +  + +        G  
Sbjct: 358 SAKHKTGIDQLVAFLQSSMGFD-ERSEGVFSARRRHLAALEKALELVVVGQRQLSGSGAG 416

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE+LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 417 ELLAEDLRLAQAHLSEITGVFSSDDLLGHIFSSFCIGK 454


>gi|218900625|ref|YP_002449036.1| tRNA modification GTPase TrmE [Bacillus cereus G9842]
 gi|228905428|ref|ZP_04069383.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 4222]
 gi|228968636|ref|ZP_04129619.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218540589|gb|ACK92983.1| tRNA modification GTPase TrmE [Bacillus cereus G9842]
 gi|228791065|gb|EEM38683.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228854248|gb|EEM98951.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 4222]
          Length = 458

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/459 (31%), Positives = 245/459 (53%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI+I+R+SG    +  + I K K       S    +G        
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKD-LTEVPSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+   ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLI 343
           ADL+L++        N  +++    +  DFI I  K+DL      E              
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFHAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGQTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|190171190|gb|ACE63665.1| ThdF [Enterobacter cancerogenus]
          Length = 439

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 154/442 (34%), Positives = 239/442 (54%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDADGTSLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  + ND+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNQVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG+E
Sbjct: 299 TTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVE 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +      +     + +RHL  L +  R+LE            +++AE LRL
Sbjct: 359 ALRNHLKQSMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQNLSEITGEFTSDDLLGRIF 439


>gi|163796498|ref|ZP_02190458.1| tRNA modification GTPase TrmE [alpha proteobacterium BAL199]
 gi|159178348|gb|EDP62892.1| tRNA modification GTPase TrmE [alpha proteobacterium BAL199]
          Length = 444

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 174/440 (39%), Positives = 264/440 (60%), Gaps = 7/440 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T    + I++IRLSGP+ F   E +  +     R +        DG  LD  +
Sbjct: 7   DTIAALATAPGRAGIAVIRLSGPAAFGAVEALTGRVPTVRRMSRALLRDPRDGEALDDAM 66

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            +VFP P SFTGED AEFH+HGG AVV+G+L  L ++P +R A+PGEF+RRAF N ++DL
Sbjct: 67  AVVFPGPASFTGEDVAEFHLHGGRAVVDGVLGALLRLPGVRPADPGEFTRRAFLNDRLDL 126

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE++ DL+ +ET  QRR ++   SG L+ +Y  W   L    + ++A +DF + ED+ 
Sbjct: 127 TAAEAVLDLVDAETAAQRRQALRQASGSLAGIYDDWRTALVMAMARLDAWIDFPD-EDLP 185

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
               + V+ D+  L   +  H++    GE +R G ++ I+G  NAGKSSL N LA++DVA
Sbjct: 186 ADVVEGVIEDLEGLAKALEGHLADAGRGERLREGLRMAIVGPPNAGKSSLLNWLAQRDVA 245

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+   GTTRDVL + LD+EGY   ++DTAG+RET D VE EG++R     E+ADL L++
Sbjct: 246 IVSATAGTTRDVLEVYLDIEGYPATVADTAGLRETADSVEAEGVRRALARAEDADLRLVV 305

Query: 306 KEINS----KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            + ++    ++ I+   + D I I  K D   +  E +   +S  TG+GL+ L+N+I   
Sbjct: 306 VDWSASSVDREGIARWLDGDAIAIANKIDRGGSPPEPW-IPVSVTTGQGLDALMNRIAVE 364

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASVSLGKIT 420
           L  +         +  RH +   + +  +  A    +    L++ AE+LRLA+ +LG+IT
Sbjct: 365 LEARMAVREAPTLTRARHRHAAQEALEGVRRARDGLQGGVPLELPAEDLRLAARALGRIT 424

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G VDVE+LLD+IF +FC+GK
Sbjct: 425 GKVDVEELLDVIFREFCLGK 444


>gi|329736122|gb|EGG72395.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU045]
          Length = 459

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 148/459 (32%), Positives = 245/459 (53%), Gaps = 23/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           + +TI ++ST     AI I+RLSGP   ++ + + K KK      +    +G        
Sbjct: 2   DFDTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETN 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF
Sbjct: 62  ETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV++ ++  +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N 
Sbjct: 181 PEYDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNN 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  
Sbjct: 241 LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRNALSE 300

Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYST---------YTEEYDHLI 343
           ADLIL +   N              KN D I I  K+DL              +      
Sbjct: 301 ADLILFVLNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S    EG++EL  +IK +      +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|206970179|ref|ZP_03231132.1| tRNA modification GTPase TrmE [Bacillus cereus AH1134]
 gi|228955734|ref|ZP_04117729.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229082698|ref|ZP_04215145.1| tRNA modification GTPase mnmE [Bacillus cereus Rock4-2]
 gi|229193735|ref|ZP_04320676.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 10876]
 gi|206734756|gb|EDZ51925.1| tRNA modification GTPase TrmE [Bacillus cereus AH1134]
 gi|228589760|gb|EEK47638.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 10876]
 gi|228700610|gb|EEL53149.1| tRNA modification GTPase mnmE [Bacillus cereus Rock4-2]
 gi|228803962|gb|EEM50586.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 458

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/459 (31%), Positives = 243/459 (52%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI+I+R+SG    +    I K K       S    +G        
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKD-LTEVPSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLI 343
           ADL+L++        N  +++    +  DFI I  K+DL      E              
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|329919799|ref|ZP_08276750.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 1401G]
 gi|328937146|gb|EGG33574.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 1401G]
          Length = 461

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 147/456 (32%), Positives = 249/456 (54%), Gaps = 24/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYDNKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ D+I ++T+  R+++M+ + G L     +   +L +  +  E ++D+ E
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHEEVNIDYPE 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL N L+
Sbjct: 187 Y-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLLNYLS 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIVT+I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +  +D
Sbjct: 246 KEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAITESD 305

Query: 301 LILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISSF 346
           L+LLL   + +      K +   ++   I I  K+D  +  T++            IS  
Sbjct: 306 LVLLLINSSEELTEEDQKLLELTQDKKRIVILNKADQVAKITKKDIQKITDSPIVTISVL 365

Query: 347 TGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404
             + +  L   IKS+            + +++R    L +  R L E       +  LD+
Sbjct: 366 KKQNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQNDLLRKAKRSLIEAIEAINDNMPLDL 425

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 426 VQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461


>gi|237747089|ref|ZP_04577569.1| tRNA modification GTPase mnmE [Oxalobacter formigenes HOxBLS]
 gi|229378440|gb|EEO28531.1| tRNA modification GTPase mnmE [Oxalobacter formigenes HOxBLS]
          Length = 462

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/464 (35%), Positives = 239/464 (51%), Gaps = 26/464 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP----FPRKASLRYFFGL 56
           MN +   I A++T      + I+R+SG +         +         PR A    F   
Sbjct: 1   MNTDSSPIAAIATAPGRGGVGIVRISGKNLEPFISEFFRAASKDLPLKPRYAHFLPFLDA 60

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
           DG I+D+G+ + F +P SFTGED  E   HGG  V+  +L+      K   LR+A PGEF
Sbjct: 61  DGNIIDEGIALYFKAPHSFTGEDVLELQGHGGPVVLQMVLKRCLQVGKTIQLRIAEPGEF 120

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N +IDL +AE++ADLI + TE   R +   +SG  S         +  +R  +E
Sbjct: 121 TRRAFLNDRIDLAQAEAIADLIDATTEEAVRSASRSLSGVFSKEIRDLASAIIQLRMMVE 180

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           + LDF E ED+     + V   I+ ++  +   ISQ   G ++R G  +V+ G +N GKS
Sbjct: 181 SSLDFPE-EDIDFLKKENVKEKIISIRESLRGIISQAAQGALLREGIHVVLAGQTNVGKS 239

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET--DDIVEKEGIKR 291
           SL N L   D+AIVT + GTTRD +T  + LEG  V + DTAGIR +  +D VE+ GI+R
Sbjct: 240 SLLNVLTGSDIAIVTPVAGTTRDKITETIQLEGIPVTLIDTAGIRPSTAEDEVERIGIER 299

Query: 292 TFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL------YSTYTEE 338
            + E+E AD+IL L +        + K    FP NI  I I  K D+             
Sbjct: 300 AWTEIEKADVILHLLDASLGPTRSDEKIAADFPPNIPVIQIWNKIDISGHRPSTDNMFGI 359

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE- 397
               +S+ TGEG++ L  ++  I     +    +  + +RHL  +     +L +A+ +  
Sbjct: 360 TQVYLSTQTGEGIDLLKTELLKIA-GWVQTGESTYLARERHLTAMKMADTHLAIATEHAV 418

Query: 398 -KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                LD++AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 419 SGSPSLDLLAEELRLAQDALNSITGEFTSDDLLGLIFSRFCIGK 462


>gi|229072949|ref|ZP_04206145.1| tRNA modification GTPase mnmE [Bacillus cereus F65185]
 gi|228710195|gb|EEL62173.1| tRNA modification GTPase mnmE [Bacillus cereus F65185]
          Length = 458

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 245/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +    I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVSSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + +E ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLIS 344
           DL+L++        N  +++    +  DFI I  K+DL      E              S
Sbjct: 301 DLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    +
Sbjct: 361 LIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|32034848|ref|ZP_00134954.1| COG0486: Predicted GTPase [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126208954|ref|YP_001054179.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae L20]
 gi|166200465|sp|A3N2D8|MNME_ACTP2 RecName: Full=tRNA modification GTPase mnmE
 gi|126097746|gb|ABN74574.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 452

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 156/454 (34%), Positives = 250/454 (55%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           K+TI A +T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G
Sbjct: 2   KDTIVAQATPIGRGGVGILRISGPLAQEVAKEVLGKEL-KPRLANYLPFKDQDGTVLDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +      ++    + K G I+R G K+VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIEGHLNDTIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL
Sbjct: 240 AIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLL 299

Query: 305 LKEINSKKEISF-----------PKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFT 347
           + +   +   +F           P++I    I  K DL   +   +E D      +S+ T
Sbjct: 300 MIDSTEQTAEAFKTEWADFLAKLPQSIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIA 406
             G++ L   +K  +  +         + +RHL  L     +LE   +        +++A
Sbjct: 360 KVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR+   +L +ITG    + LL  IFS FCIGK
Sbjct: 419 EELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|125974850|ref|YP_001038760.1| tRNA modification GTPase TrmE [Clostridium thermocellum ATCC 27405]
 gi|256003893|ref|ZP_05428880.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 2360]
 gi|205829145|sp|A3DHY8|MNME_CLOTH RecName: Full=tRNA modification GTPase mnmE
 gi|125715075|gb|ABN53567.1| tRNA modification GTPase trmE [Clostridium thermocellum ATCC 27405]
 gi|255992231|gb|EEU02326.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 2360]
 gi|316941972|gb|ADU76006.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 1313]
          Length = 459

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 152/460 (33%), Positives = 243/460 (52%), Gaps = 24/460 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
           ++++TI A+ST      + IIR+SG   F++ E I + KK F    S    +G      +
Sbjct: 2   YKEDTIAAISTPHGAGGVGIIRISGDKAFEIAERIFRGKKDFKLIRSHTINYGKIVNPEN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G +LD+ LL     P++FT ED  E + HGG+ V+  ILE   K    RLA PGEF++RA
Sbjct: 62  GAVLDEVLLSKMEKPKTFTREDVVEINCHGGMVVLKNILELCIK-EGARLAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLI+S+T    + ++  + G+LS        KL  + + IE  +D
Sbjct: 121 FLNGRIDLSQAEAVIDLINSKTNESSKAAISQLEGKLSRKIKDARSKLIELLAHIEVTVD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D++  +   V  +I  +K  +   +   + G IIR G   VI+G  N GKSSL N
Sbjct: 181 YPEH-DIEEITGNMVYEEIGKIKEKLCDIVKSFERGRIIREGIDAVIIGKPNVGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L+ K  AIVTDIPGTTRD++   +++ G  ++I DTAGIRET+D+VEK G+++T   ++
Sbjct: 240 ELSGKSKAIVTDIPGTTRDIIEEYININGIPLRIIDTAGIRETEDVVEKIGVEKTHRAID 299

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDHL 342
            ADL++++ +       +  + ++   +   I +  K DL                    
Sbjct: 300 EADLVIMMIDAKRGMDEDDNRILTMLGDKKLIILINKIDLVDEKQINEIESLLKGRKCIR 359

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
            S   G G+ EL N I  +       +    + ++ RH   +   +  +E A    +   
Sbjct: 360 TSVKEGTGISELENAITELFVQGEVSVNEEILLTNIRHKNLIDMAISSIEKAMESIDGSM 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD+++ ++  A+  LG+ITG    E ++  IFSKFC+GK
Sbjct: 420 PLDLVSIDITDAADYLGQITGESVSEDVMHEIFSKFCLGK 459


>gi|30023508|ref|NP_835139.1| tRNA modification GTPase TrmE [Bacillus cereus ATCC 14579]
 gi|218234443|ref|YP_002370259.1| tRNA modification GTPase TrmE [Bacillus cereus B4264]
 gi|228924229|ref|ZP_04087500.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228961748|ref|ZP_04123351.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229112897|ref|ZP_04242428.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-15]
 gi|229130730|ref|ZP_04259683.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-Cer4]
 gi|229148034|ref|ZP_04276373.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST24]
 gi|296505912|ref|YP_003667612.1| tRNA modification GTPase TrmE [Bacillus thuringiensis BMB171]
 gi|46577419|sp|Q814F6|MNME_BACCR RecName: Full=tRNA modification GTPase mnmE
 gi|29899069|gb|AAP12340.1| Thiophene and furan oxidation protein ThdF [Bacillus cereus ATCC
           14579]
 gi|218162400|gb|ACK62392.1| tRNA modification GTPase TrmE [Bacillus cereus B4264]
 gi|228635459|gb|EEK91950.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST24]
 gi|228652747|gb|EEL08632.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-Cer4]
 gi|228670576|gb|EEL25889.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-15]
 gi|228797942|gb|EEM44952.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228835447|gb|EEM80817.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|296326964|gb|ADH09892.1| tRNA modification GTPase TrmE [Bacillus thuringiensis BMB171]
          Length = 458

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 246/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +  + I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKDLTEVPSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + +E ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLIS 344
           DL+L++        N  +++    +  DFI I  K+DL      E              S
Sbjct: 301 DLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    +
Sbjct: 361 LIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|30265502|ref|NP_847879.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Ames]
 gi|49188321|ref|YP_031574.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Sterne]
 gi|49480475|ref|YP_039474.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|50196974|ref|YP_052661.1| tRNA modification GTPase TrmE [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65317465|ref|ZP_00390424.1| COG0486: Predicted GTPase [Bacillus anthracis str. A2012]
 gi|165873022|ref|ZP_02217643.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0488]
 gi|167635055|ref|ZP_02393372.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0442]
 gi|167641744|ref|ZP_02399987.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0193]
 gi|170689483|ref|ZP_02880673.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0465]
 gi|170707531|ref|ZP_02897984.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0389]
 gi|177655270|ref|ZP_02936824.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0174]
 gi|190569290|ref|ZP_03022184.1| tRNA modification GTPase TrmE [Bacillus anthracis Tsiankovskii-I]
 gi|196036118|ref|ZP_03103518.1| tRNA modification GTPase TrmE [Bacillus cereus W]
 gi|196045402|ref|ZP_03112633.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB108]
 gi|218906676|ref|YP_002454510.1| tRNA modification GTPase TrmE [Bacillus cereus AH820]
 gi|227818253|ref|YP_002818262.1| tRNA modification GTPase TrmE [Bacillus anthracis str. CDC 684]
 gi|228918096|ref|ZP_04081624.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228930490|ref|ZP_04093490.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228936764|ref|ZP_04099555.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228949206|ref|ZP_04111474.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229094595|ref|ZP_04225662.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-42]
 gi|229124987|ref|ZP_04254161.1| tRNA modification GTPase mnmE [Bacillus cereus 95/8201]
 gi|229600776|ref|YP_002869693.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0248]
 gi|254687075|ref|ZP_05150933.1| tRNA modification GTPase TrmE [Bacillus anthracis str. CNEVA-9066]
 gi|254724142|ref|ZP_05185927.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A1055]
 gi|254735159|ref|ZP_05192869.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742132|ref|ZP_05199819.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Kruger B]
 gi|254755958|ref|ZP_05207990.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Vollum]
 gi|254761362|ref|ZP_05213384.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Australia
           94]
 gi|301056958|ref|YP_003795169.1| tRNA modification GTPase TrmE [Bacillus anthracis CI]
 gi|46577421|sp|Q81JD9|MNME_BACAN RecName: Full=tRNA modification GTPase mnmE
 gi|81394076|sp|Q6HAF2|MNME_BACHK RecName: Full=tRNA modification GTPase mnmE
 gi|30260180|gb|AAP29365.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Ames]
 gi|49182248|gb|AAT57624.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Sterne]
 gi|49332031|gb|AAT62677.1| tRNA modification GTPase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|50083036|gb|AAT70169.1| tRNA modification GTPase TrmE [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164711234|gb|EDR16790.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0488]
 gi|167510298|gb|EDR85701.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0193]
 gi|167529529|gb|EDR92279.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0442]
 gi|170127527|gb|EDS96401.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0389]
 gi|170666585|gb|EDT17358.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0465]
 gi|172080197|gb|EDT65289.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0174]
 gi|190559597|gb|EDV13588.1| tRNA modification GTPase TrmE [Bacillus anthracis Tsiankovskii-I]
 gi|195991285|gb|EDX55253.1| tRNA modification GTPase TrmE [Bacillus cereus W]
 gi|196023609|gb|EDX62285.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB108]
 gi|218538645|gb|ACK91043.1| tRNA modification GTPase TrmE [Bacillus cereus AH820]
 gi|227004482|gb|ACP14225.1| tRNA modification GTPase TrmE [Bacillus anthracis str. CDC 684]
 gi|228658488|gb|EEL14154.1| tRNA modification GTPase mnmE [Bacillus cereus 95/8201]
 gi|228688842|gb|EEL42673.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-42]
 gi|228810489|gb|EEM56842.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228822973|gb|EEM68814.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228829209|gb|EEM74846.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228841576|gb|EEM86692.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229265184|gb|ACQ46821.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0248]
 gi|300379127|gb|ADK08031.1| tRNA modification GTPase TrmE [Bacillus cereus biovar anthracis
           str. CI]
          Length = 458

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 243/459 (52%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI+I+R+SG    +    I K K       S    +G        
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKD-LTEVPSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLI 343
           ADL+L++        N  +E+    +  DFI I  K+DL      E              
Sbjct: 300 ADLVLVVVNYSETLTNEDEELFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRVITT 359

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|319399917|gb|EFV88163.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis FRI909]
          Length = 459

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 148/459 (32%), Positives = 245/459 (53%), Gaps = 23/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           + +TI ++ST     AI I+RLSGP   ++ + + K KK      +    +G        
Sbjct: 2   DFDTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF
Sbjct: 62  ETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV++ ++  +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N 
Sbjct: 181 PEYDDVEDATTDFLLEQSKRIKEEINRLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNN 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  
Sbjct: 241 LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSE 300

Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYST---------YTEEYDHLI 343
           ADLIL +   N              KN D I I  K+DL              +      
Sbjct: 301 ADLILFVLNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S    EG++EL  +IK +      +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|312872669|ref|ZP_07732734.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2062A-h1]
 gi|311091711|gb|EFQ50090.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2062A-h1]
          Length = 461

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 146/456 (32%), Positives = 249/456 (54%), Gaps = 24/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ D+I ++T+  R+++M+ + G L     +   +L +  +  E ++D+ E
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHEEVNIDYPE 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL N L+
Sbjct: 187 Y-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLLNYLS 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIVT+I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +  +D
Sbjct: 246 KEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAITESD 305

Query: 301 LILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISSF 346
           L+LLL   + +      K +   ++   I I  K+D  +  T++            IS  
Sbjct: 306 LVLLLINSSEELTEEDQKLLELTQDKKRIIILNKADQVAKITKKDIQKITDSPIVTISVL 365

Query: 347 TGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404
             + +  L   IKS+            + +++R    L +  + L E       +  LD+
Sbjct: 366 KKQNMTGLEEAIKSLFLQGITDSKSEVMVTNQRQNDLLRKAKQSLIEAIEAINDNMPLDL 425

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 426 VQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461


>gi|300812005|ref|ZP_07092461.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497031|gb|EFK32097.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 461

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 245/459 (53%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+R+SG     +   + K K    +  S    +G       
Sbjct: 6   TEFDTIAAISTPLGEGGISIVRVSGEDAVAIVNRLFKGKD-LEKVPSHTINYGHIVDPAT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+++D+ +  V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RA
Sbjct: 65  GQVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQ-LLLANGARMADPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D+I ++T+  R+++++ +SG L +       ++  + + +E ++D
Sbjct: 124 FVNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRALRQEILDVLANVEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D +  +++++L     +   I   +   + G+I+RNG K  I+G  N GKSSL N
Sbjct: 184 YPEY-DEEEVTAQKMLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  T+D VEK G++R+   + 
Sbjct: 243 YLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIGVERSKKAIA 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD--------HLI 343
            ADLILLL + +       ++ +        I +  K+DL    T               
Sbjct: 303 QADLILLLLDGSQELTEEDRRLLELTAGKKRIIVLNKTDLGQKLTAAEIAKESGSEVIST 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    E L+EL   IK +     +      + +++R    L++  + L ++AS  E    
Sbjct: 363 SIMMKENLDELEALIKKLFFKGIENSNDQVLVTNQRQAGLLAKAKQQLADVASGLESGMP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +   A  SLG+ITG    ++L++ +FS+FC+GK
Sbjct: 423 VDLVQIDFTGAWESLGEITGDSAPDELINDLFSQFCLGK 461


>gi|118480511|ref|YP_897662.1| tRNA modification GTPase TrmE [Bacillus thuringiensis str. Al
           Hakam]
 gi|166200468|sp|A0RLR2|MNME_BACAH RecName: Full=tRNA modification GTPase mnmE
 gi|118419736|gb|ABK88155.1| tRNA modification GTPase trmE [Bacillus thuringiensis str. Al
           Hakam]
          Length = 458

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 244/459 (53%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI+I+R+SG    +    I K K       S    +G        
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKD-LTEVPSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLI 343
           ADL+L++        N  +E+    +  DFI I  K+DL      E              
Sbjct: 300 ADLVLVVVNYSEALTNEDEELFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRVITT 359

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|227823856|ref|YP_002827829.1| tRNA modification GTPase TrmE [Sinorhizobium fredii NGR234]
 gi|227342858|gb|ACP27076.1| tRNA modification GTPase TrmE [Sinorhizobium fredii NGR234]
          Length = 439

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 223/439 (50%), Positives = 298/439 (67%), Gaps = 8/439 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+S+GALP+ +++IR+SG +   V   +C    P PR A+LR     +G ILD GL
Sbjct: 5   DTIYALSSGALPAGVAVIRISGSATAAVIGRLCG-ALPKPRTAALRTIRTRNGEILDSGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I FP+P SFTGED  E  VHGG AVV+ IL+ LA    LR A  GEFSRRAF+NGK+DL
Sbjct: 64  VIYFPAPASFTGEDCCELQVHGGRAVVHAILDTLAGFERLRHAEAGEFSRRAFQNGKMDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E LADLIS+ETEMQRRL++E   G  S+LY  W  +LTH R+ IEA+LDF++E+D+ 
Sbjct: 124 VEVEGLADLISAETEMQRRLAVEQAGGGQSALYQGWSRRLTHARAMIEAELDFADEDDIP 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S+ +  DI  L+ +I +H+ +  L EIIR+G KIVI G  NAGKSSL NALAK+D+A
Sbjct: 184 GSVSEMIWADIETLQAEIDAHVDRAGLAEIIRDGLKIVIAGAPNAGKSSLLNALAKRDIA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL++DL L G+ VK+ DTAG+RETD++VE+EGI+R    + +ADLILLL
Sbjct: 244 IVTEIAGTTRDVLSVDLSLAGFSVKLFDTAGLRETDELVEREGIRRAREAIGHADLILLL 303

Query: 306 KEINSKKEISFP--KNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLEELINKIKSI 361
            E         P   N+  I + TK D    +    + D  +S+ TG+G+ +L+ K+K+ 
Sbjct: 304 SENPDGFAWEEPIGDNVPVIRVATKIDRSEAHWAPGQADLFLSTKTGDGITDLLEKLKAQ 363

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
           L +   +   +IPS KRH+  L Q    L  +   +   GLDI AE LRLAS +LG+ITG
Sbjct: 364 LPDLAGRTSLAIPSRKRHVDCLKQARTALARSLAVD---GLDIQAEQLRLASDALGRITG 420

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            VDVE LLD+IFS+FCIGK
Sbjct: 421 RVDVENLLDVIFSEFCIGK 439


>gi|190171242|gb|ACE63691.1| ThdF [Enterobacter sp. OD1121_04]
          Length = 439

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 151/442 (34%), Positives = 238/442 (53%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDTDGTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNSVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG++
Sbjct: 299 TTDAVDPADIWPDFIARLPAKLPITVVRNKADVTGETLGISEVNGHSLIRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
           +L N +K  +      +     + +RHL  L    R+L+            +++AE LRL
Sbjct: 359 DLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAARHLDQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQNLSEITGEFTSDDLLGRIF 439


>gi|313124784|ref|YP_004035043.1| tRNA modification GTPase mnme [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312281347|gb|ADQ62066.1| tRNA modification GTPase mnmE [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 461

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 245/459 (53%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+R+SG     +   + K K    +  S    +G       
Sbjct: 6   TEFDTIAAISTPLGEGGISIVRVSGEDAVAIVNRLFKGKD-LEKVPSHTINYGHIVDPAT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+++D+ +  V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RA
Sbjct: 65  GQVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQ-LLLANGARMADPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D+I ++T+  R+++++ +SG L +       ++  + + +E ++D
Sbjct: 124 FVNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRALRQEILDVLANVEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D +  +++++L     +   I   +   + G+I+RNG K  I+G  N GKSSL N
Sbjct: 184 YPEY-DEEEVTAQKMLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  T+D VEK G++R+   + 
Sbjct: 243 YLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIGVERSKKAIA 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD--------HLI 343
            ADLILLL + +       ++ +        I +  K+DL    T               
Sbjct: 303 QADLILLLLDGSQELTEEDRRLLELTAGKKRIIVLNKTDLGQKLTAAEIAKESGSEVIST 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    E L+EL   IK +     +      + +++R    L++  + L ++AS  E    
Sbjct: 363 SIMMKENLDELEALIKKLFFKGIENSNDQVLVTNQRQAGLLAKAKQQLADVASGLEAGMP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +   A  SLG+ITG    ++L++ +FS+FC+GK
Sbjct: 423 VDLVQIDFTGAWESLGEITGDSAPDELINDLFSQFCLGK 461


>gi|52145292|ref|YP_086749.1| tRNA modification GTPase TrmE [Bacillus cereus E33L]
 gi|196041935|ref|ZP_03109222.1| tRNA modification GTPase TrmE [Bacillus cereus NVH0597-99]
 gi|225867465|ref|YP_002752843.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB102]
 gi|229187713|ref|ZP_04314849.1| tRNA modification GTPase mnmE [Bacillus cereus BGSC 6E1]
 gi|81685202|sp|Q630B8|MNME_BACCZ RecName: Full=tRNA modification GTPase mnmE
 gi|51978761|gb|AAU20311.1| tRNA modification GTPase [Bacillus cereus E33L]
 gi|196027190|gb|EDX65810.1| tRNA modification GTPase TrmE [Bacillus cereus NVH0597-99]
 gi|225785903|gb|ACO26120.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB102]
 gi|228595781|gb|EEK53465.1| tRNA modification GTPase mnmE [Bacillus cereus BGSC 6E1]
          Length = 458

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/458 (31%), Positives = 245/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +    I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLIS 344
           DL+L++        N  +E+    +  DFI I  K+DL      E              S
Sbjct: 301 DLVLVVVNYSEALTNEDEELFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRVITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    +
Sbjct: 361 LIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|229099911|ref|ZP_04230834.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-29]
 gi|229118974|ref|ZP_04248319.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-3]
 gi|228664499|gb|EEL19995.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-3]
 gi|228683526|gb|EEL37481.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-29]
          Length = 458

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 245/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +    I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLIS 344
           DL+L++        N  +++    +  DFI I  K+DL      E              S
Sbjct: 301 DLVLIVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQGIDMERVAELAAGNRVITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    +
Sbjct: 361 LIEEQGIDELEQAIAELFFEGTIDSADMTYVSNARHIGLLTQAEKTIGDAIEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|259500781|ref|ZP_05743683.1| tRNA modification GTPase TrmE [Lactobacillus iners DSM 13335]
 gi|302190768|ref|ZP_07267022.1| tRNA modification GTPase TrmE [Lactobacillus iners AB-1]
 gi|309805912|ref|ZP_07699944.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 03V1-b]
 gi|315654126|ref|ZP_07907042.1| tRNA modification GTPase TrmE [Lactobacillus iners ATCC 55195]
 gi|325913694|ref|ZP_08176056.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 60-B]
 gi|259167475|gb|EEW51970.1| tRNA modification GTPase TrmE [Lactobacillus iners DSM 13335]
 gi|308167688|gb|EFO69835.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 03V1-b]
 gi|315488822|gb|EFU78468.1| tRNA modification GTPase TrmE [Lactobacillus iners ATCC 55195]
 gi|325477053|gb|EGC80203.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 60-B]
          Length = 461

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 146/456 (32%), Positives = 249/456 (54%), Gaps = 24/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ D+I ++T+  R+++M+ + G L     +   +L +  +  E ++D+ E
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHEEVNIDYPE 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL N L+
Sbjct: 187 Y-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLLNYLS 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIVT+I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +  +D
Sbjct: 246 KEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAITESD 305

Query: 301 LILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISSF 346
           L+LLL   + +      K +   ++   I I  K+D  +  T++            IS  
Sbjct: 306 LVLLLINSSEELTEEDQKLLELTQDKKRIVILNKADQVAKITKKDIQKITDSPIVTISVL 365

Query: 347 TGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404
             + +  L   IKS+            + +++R    L +  + L E       +  LD+
Sbjct: 366 KKQNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQNDLLRKAKQSLIEAIEAINDNMPLDL 425

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 426 VQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461


>gi|281418695|ref|ZP_06249714.1| tRNA modification GTPase TrmE [Clostridium thermocellum JW20]
 gi|281407779|gb|EFB38038.1| tRNA modification GTPase TrmE [Clostridium thermocellum JW20]
          Length = 459

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 152/460 (33%), Positives = 243/460 (52%), Gaps = 24/460 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
           ++++TI A+ST      + IIR+SG   F++ E I + KK F    S    +G      +
Sbjct: 2   YKEDTIAAISTPHGAGGVGIIRISGDKAFEIAERIFRGKKDFKLIRSHTINYGKIINPEN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G +LD+ LL     P++FT ED  E + HGG+ V+  ILE   K    RLA PGEF++RA
Sbjct: 62  GAVLDEVLLSKMEKPKTFTREDVVEINCHGGMVVLKNILELCIK-EGARLAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLI+S+T    + ++  + G+LS        KL  + + IE  +D
Sbjct: 121 FLNGRIDLSQAEAVIDLINSKTNESSKAAISQLEGKLSRKIKDARSKLIELLAHIEVTVD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D++  +   V  +I  +K  +   +   + G IIR G   VI+G  N GKSSL N
Sbjct: 181 YPEH-DIEEITGNMVYEEIGKIKEKLCDIVKSFERGRIIREGIDAVIIGKPNVGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L+ K  AIVTDIPGTTRD++   +++ G  ++I DTAGIRET+D+VEK G+++T   ++
Sbjct: 240 ELSGKSKAIVTDIPGTTRDIIEEYININGIPLRIIDTAGIRETEDVVEKIGVEKTHRAID 299

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDHL 342
            ADL++++ +       +  + ++   +   I +  K DL                    
Sbjct: 300 EADLVIMMIDAKRGMDEDDNRILTMLGDKKLIILINKIDLVDEKQINEIESLLKGRKCIR 359

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
            S   G G+ EL N I  +       +    + ++ RH   +   +  +E A    +   
Sbjct: 360 TSVKEGTGISELENAITELFVQGEVSVNEEILLTNIRHKNLIDMAISSIEKAMESIDGSM 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD+++ ++  A+  LG+ITG    E ++  IFSKFC+GK
Sbjct: 420 PLDLVSIDITDAADYLGQITGESVSEDVMHEIFSKFCLGK 459


>gi|300118814|ref|ZP_07056534.1| tRNA modification GTPase TrmE [Bacillus cereus SJ1]
 gi|298723782|gb|EFI64504.1| tRNA modification GTPase TrmE [Bacillus cereus SJ1]
          Length = 458

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 243/459 (52%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI+I+R+SG    +    I K K       S    +G        
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKD-LTEVPSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ +  +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMASIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLI 343
           ADL+L++        N  +E+    +  DFI I  K+DL  +   E              
Sbjct: 300 ADLVLVVVNYSETLTNEDEELFRAVQGKDFIVIVNKTDLPQSIDMERVIELAAGNRVITT 359

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSTDVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|229153643|ref|ZP_04281819.1| tRNA modification GTPase mnmE [Bacillus cereus m1550]
 gi|228629829|gb|EEK86482.1| tRNA modification GTPase mnmE [Bacillus cereus m1550]
          Length = 458

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 244/459 (53%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI+I+R+SG    +  + I K K       S    +G        
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKD-LTEVPSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMSQ 299

Query: 299 ADLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLI 343
           ADL+L++        N  +++    +  DFI I  K+DL      E              
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|152981181|ref|YP_001355383.1| tRNA modification GTPase TrmE [Janthinobacterium sp. Marseille]
 gi|205829159|sp|A6T4D6|MNME_JANMA RecName: Full=tRNA modification GTPase mnmE
 gi|151281258|gb|ABR89668.1| tRNA modification GTPase [Janthinobacterium sp. Marseille]
          Length = 465

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 162/467 (34%), Positives = 248/467 (53%), Gaps = 29/467 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGLDG 58
           MN +   I A++T      I ++R+SG +   + E +C  K  +  PR A+   F   DG
Sbjct: 1   MNFDSSPIAAIATAPGRGGIGVVRVSGKNISSIIEAVCATKGAELQPRHATFTNFVNADG 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSR 115
            ++D+GL I F +P S+TGED  E   HGG  V+  +L    +      LR+A PGEF+ 
Sbjct: 61  SVIDQGLAIYFKAPHSYTGEDVLELQGHGGPIVLQMLLTRCLEAGTDIGLRMAQPGEFTH 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE + DLI + TE   + + + +SG  S      +DK+T++R  +EA 
Sbjct: 121 RAFLNDKLDLAQAEGVIDLIEASTEAAAKSASQSLSGAFSKTIQDLVDKITNLRMLVEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF E E++      +    +  ++  + +  +Q   G ++R+G  IV+ G  N GKSSL
Sbjct: 181 LDFPE-EEIDFLEKSDARGQLNGIREALQAVFTQASQGALLRDGLNIVLAGQPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRT 292
            NALA  DVAIVT I GTTRD +   + +EG  V + DTAGIR+  D     E+ GI+RT
Sbjct: 240 LNALAGSDVAIVTAIAGTTRDKVIETIQIEGIPVNVIDTAGIRDASDATDEVERIGIERT 299

Query: 293 FLEVENADLILLLKEIN-----SKKEI--SFPKNIDFIFIGTKSDL------YSTYTEEY 339
           +  V+ AD+I+ + + N     + ++I   FP+NI  + I  K DL           +  
Sbjct: 300 WAAVKTADVIIHMLDANRGPTRADEQIVERFPENIPVMRIWNKIDLSGHRPAIDRMPDST 359

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK- 398
              +S+   +G++ L  ++  ++  + +       + +RHL  L     +LEMA+ +   
Sbjct: 360 HIYVSATDLQGMDLLRGELLRLIGWQ-QTGESLYLARERHLVALKSAHDHLEMAAQHAAH 418

Query: 399 -----DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                D  LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 DSEATDPALDLFAEELRLAQERLSSITGEFTSDDLLGVIFSRFCIGK 465


>gi|238899053|ref|YP_002924735.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259495842|sp|C4K7P4|MNME_HAMD5 RecName: Full=tRNA modification GTPase mnmE
 gi|229466813|gb|ACQ68587.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 458

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 171/462 (37%), Positives = 256/462 (55%), Gaps = 26/462 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      I I+R+SG +   V + I   K P  R A    F   +G I
Sbjct: 1   MSHT-DTIVAQATPIGRGGIGILRISGCATKTVAKEILG-KLPRARYAEYLAFKDPEGNI 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL--RLANPGEFSRRAF 118
           LD+G+ + FP+P SFTGED  E   HGG  +++ +L+ +  +P++  R+A PGEFS RAF
Sbjct: 59  LDQGIALYFPAPHSFTGEDVLELQGHGGPIILDLLLKAILNLPDVCVRIARPGEFSERAF 118

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            N K+DL++AE++ADLI + TE   R ++  + G  S    Q I+ LT++R +IEA +DF
Sbjct: 119 LNDKLDLVQAEAVADLIDASTEQAARCALHSLKGTFSLRINQLIESLTYLRVYIEASMDF 178

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+ E++   S  ++   +  + +D+    S+ + G+++R G KIVI G  N GKSSL NA
Sbjct: 179 SD-EEIDFLSDGKIETQLDRVIHDLDKVRSEARQGQLLREGMKIVIAGRPNVGKSSLLNA 237

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVT IPGTTRDVL   + + G  + I DTAG+RET+D VEK GI+R + E+E 
Sbjct: 238 LTGRETAIVTQIPGTTRDVLREQIQINGMPLHIIDTAGLRETEDPVEKIGIERAWNEIEQ 297

Query: 299 ADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDL------YSTYTEEYD 340
           AD IL + + ++  E +                +    I  KSD+       +   E   
Sbjct: 298 ADRILFIVDGSTSSEKTIYPLWPEWEARLSRSRLPITLIRNKSDITGEDVALTETEEGTF 357

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398
             +S+ TGEG++ L   ++  +      +     + +RHL  L    +YL  A    +  
Sbjct: 358 ISLSARTGEGIDLLREHLQQTM-GFSGNMEGGFLARRRHLEALENAAQYLLSARQKWSSG 416

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   +++AE LRLA   L +ITG V    LL IIFS FCIGK
Sbjct: 417 NFLSELLAEELRLAQQVLSEITGQVSSNDLLGIIFSSFCIGK 458


>gi|222056913|ref|YP_002539275.1| tRNA modification GTPase TrmE [Geobacter sp. FRC-32]
 gi|221566202|gb|ACM22174.1| tRNA modification GTPase TrmE [Geobacter sp. FRC-32]
          Length = 455

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 164/456 (35%), Positives = 244/456 (53%), Gaps = 20/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFGLDGR 59
           + ++TI A+ST      ISIIR+SGP C  + + I ++ +       +      F  D  
Sbjct: 2   YLRDTIAAISTPIGEGGISIIRISGPDCLSIADRIFRRSRDGGLKSHRFYYGVIFDPDSA 61

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ILD+ ++++   P SFT ED  E H HGG  VV  IL  L      RLA+PGEF++RAF
Sbjct: 62  AILDEAMVVLMRGPNSFTREDVLELHCHGGYLVVRRIL-ALVLRQGARLADPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL++AE++ D+I S++EM   L+     G LS    Q  + L    +F+EA +DF
Sbjct: 121 LNGRIDLVQAEAIMDIIHSKSEMSLNLAQHQREGLLSRQLFQLKEYLLSSLAFLEAFIDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E ED+   + + +  +I      +   +S    G IIR G  +VI G  N GKSSL NA
Sbjct: 181 PE-EDIDVSAKEHIGQNIDSSLLMLDELLSGFSEGRIIREGVSVVIAGKPNVGKSSLLNA 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVT IPGTTRD++   + + G  VK+ DTAGIRE+DD VEKEG+K +  ++ +
Sbjct: 240 LLQEKRAIVTAIPGTTRDLIEEQMTINGLPVKLLDTAGIRESDDHVEKEGVKLSLEKLSS 299

Query: 299 ADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-----ISSFT 347
           ADL+L + + +S      +  +       F+ +  KSD+  +Y   ++       +S+ T
Sbjct: 300 ADLVLFVVDASSSFSAEDQSILERLSGFSFMVVKNKSDIDGSYVLPFEPELPVLSLSTHT 359

Query: 348 GEGLEELINKIKSILSN--KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDI 404
           G GL +L   I     +        F   S  RH   L+     L     N +++  LD+
Sbjct: 360 GHGLVDLQQAIFDFFIHLPDHDSREFVAISQVRHRDALTGCRNALANFKDNLDREVNLDL 419

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A +LR A  SLG +TG    + +LD IF +FCIGK
Sbjct: 420 LAIDLRDALDSLGAVTGETTADDVLDRIFQQFCIGK 455


>gi|304405894|ref|ZP_07387552.1| tRNA modification GTPase TrmE [Paenibacillus curdlanolyticus YK9]
 gi|304345137|gb|EFM10973.1| tRNA modification GTPase TrmE [Paenibacillus curdlanolyticus YK9]
          Length = 461

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/462 (31%), Positives = 238/462 (51%), Gaps = 23/462 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           MN   +TI A++T     +I+IIR+SGP   +    + + K+ F    S    +G     
Sbjct: 1   MNMTHDTIAAIATAVGEGSIAIIRVSGPDAIERTADVFRSKEDFRSAESHTVHYGHIVDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L  + +++ L+ V   P SFTGED  E   HGG+     +L+ + K P +R+A PGEF++
Sbjct: 61  LTNQRVEEVLVTVMRGPRSFTGEDVVEIGTHGGVIAAKNVLQLVLKQPGIRVAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI S+++   +++M+   G LS         +  + + +E +
Sbjct: 121 RAFLNGRIDLTQAEAVMDLIRSKSDRAFQVAMKQSEGSLSKRIADLRQTIIEVIAHVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E  DV+  +S  +          +   +     G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEH-DVEELTSAFIREHCGVALEGVKRLLKTASEGKILREGIVTAIVGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL + + AIVTDIPGTTRDV+   + + G  +++ DTAGIRET D+VE+ G++R+   
Sbjct: 240 LNALTQSNKAIVTDIPGTTRDVIEEFVTVNGIPLRLLDTAGIRETADVVERIGVERSNSA 299

Query: 296 VENADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYST---------YTEEYD 340
           +E ADLIL +         + ++ +        + I  K+DL            +  E  
Sbjct: 300 LEEADLILYVLNRNEKLHDDDRQLMEKLAGRQVVVIFNKTDLPQQLETAEVEQVFPAERI 359

Query: 341 HLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398
             +S    EG++ L   I  +    + +    +  ++ RH+  L +  + L  A    E 
Sbjct: 360 VPMSVLGEEGIDRLEEVISELFFEGRIESNDLTYVTNVRHISLLERAKQSLLDAIEATEI 419

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +DI+  +++ A   LG++ G    E LLD IFS+FC+GK
Sbjct: 420 GVPIDIVQIDIQQAWELLGEVIGDSAGESLLDQIFSQFCLGK 461


>gi|190171168|gb|ACE63654.1| ThdF [Citrobacter freundii]
          Length = 439

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 151/442 (34%), Positives = 240/442 (54%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDADGSTLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  + +D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNNVISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG++
Sbjct: 299 TTDAVDPADIWPDFIARLPAKLPITVVRNKADITGETLGLSEVNGHSLVRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +  +   +     + +RHL  L++   +LE            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFE-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQNLSEITGEFTSDDLLGRIF 439


>gi|172059049|ref|YP_001815509.1| tRNA modification GTPase TrmE [Exiguobacterium sibiricum 255-15]
 gi|205829139|sp|B1YGA8|MNME_EXIS2 RecName: Full=tRNA modification GTPase mnmE
 gi|171991570|gb|ACB62492.1| tRNA modification GTPase TrmE [Exiguobacterium sibiricum 255-15]
          Length = 460

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 146/459 (31%), Positives = 250/459 (54%), Gaps = 23/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI+I+RLSGP   +  + + +         +    +G        
Sbjct: 3   EFDTIAAISTPMGEGAIAIVRLSGPKAVETADRVYRGANRLTDVPTHTIHYGKLVEQTTE 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ ++ V  +P++FT ED  E + HGGI  VN +LE + + P++RLA PGEF++RAF
Sbjct: 63  QVVDEVMVSVMRAPKTFTREDVVELNCHGGIVAVNRVLELILEQPDVRLAEPGEFTKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  + G LS L     ++L    + IE ++D+
Sbjct: 123 LNGRIDLSQAEAVMDLIRAKTDRAMTVAVGQIEGRLSKLVQDLREQLLQTIASIEVNIDY 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D +  + + V  D   ++  ++  ++  + G+I+R G    I+G  N GKSSL N 
Sbjct: 183 PEY-DAEEMTQQIVQKDAGEVRRILTELLATARQGKILREGLSTAIIGRPNVGKSSLLNT 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRD +   +++ G  +K+ DTAGIRET+DIVE+ G++++   + +
Sbjct: 242 LVQEAKAIVTDIAGTTRDTIEEYVNVRGVPLKLIDTAGIRETEDIVERMGVEKSRQALNS 301

Query: 299 ADLILLLK---EINSKKEISF---PKNIDFIFIGTKSDLYSTY---------TEEYDHLI 343
           ADLILL+    +  +++++      + ++ I I  KSDL                     
Sbjct: 302 ADLILLVLNGNDALTEEDVLLFEAIRGMNAIIIVNKSDLTQAIDLTRVSELADGRPVVTT 361

Query: 344 SSFTGEGLEELINKIKSILSNKF-KKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S     G+ +L   I S+   +  +    +  S+ RH+  + Q  + +E A    E    
Sbjct: 362 SLLEEAGVTDLEAAIASLFFEQGVEGQDMTYVSNARHIQLIKQASQMIEDALGAAEASMP 421

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +LR A  +LG+I G    + LLD +FS+FC+GK
Sbjct: 422 IDMVQIDLRRAWDTLGEINGDTAQDSLLDKLFSQFCLGK 460


>gi|190171222|gb|ACE63681.1| ThdF [Enterobacter ludwigii]
          Length = 439

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 150/442 (33%), Positives = 239/442 (54%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDTDGTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGMRIAKPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNSVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG++
Sbjct: 299 TTDAVDPADIWPDFIARLPAKLPITVVRNKADVTGETLGISEVNGHSLIRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
           +L N +K  +      +     + +RHL  L    R+L+            +++AE LRL
Sbjct: 359 DLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAARHLDQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG +  + LL  IF
Sbjct: 418 AQQNLSEITGEITSDDLLGRIF 439


>gi|228911324|ref|ZP_04075128.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 200]
 gi|228848342|gb|EEM93192.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 200]
          Length = 458

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/459 (31%), Positives = 244/459 (53%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI+I+R+SG    +  + I K K       S    +G        
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKD-LTEVPSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLI 343
           ADL+L++        N  +++    +  DFI I  K+DL      E              
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFHAIQGKDFIVIVNKTDLPQAIDMERVTKLAAGNRVITT 359

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGQTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|229181730|ref|ZP_04309053.1| tRNA modification GTPase mnmE [Bacillus cereus 172560W]
 gi|228601763|gb|EEK59261.1| tRNA modification GTPase mnmE [Bacillus cereus 172560W]
          Length = 458

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 143/459 (31%), Positives = 243/459 (52%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI+I+R+SG    +    I K K       S    +G        
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKD-LTEVPSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLI 343
           ADL+L++        N  +++    +  +FI I  K+DL      E              
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKEFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|104774816|ref|YP_619796.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514945|ref|YP_813851.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122274323|sp|Q047F9|MNME_LACDB RecName: Full=tRNA modification GTPase mnmE
 gi|123077174|sp|Q1G7Z4|MNME_LACDA RecName: Full=tRNA modification GTPase mnmE
 gi|103423897|emb|CAI98939.1| tRNA modification GTPase trmE [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116094260|gb|ABJ59413.1| tRNA modification GTPase trmE [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325126645|gb|ADY85975.1| Thiophene and furan oxidation protein [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 461

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 245/459 (53%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+R+SG     +   + K K    +  S    +G       
Sbjct: 6   TEFDTIAAISTPLGEGGISIVRVSGEDAVAIVNRLFKGKD-LEKVPSHTINYGHIVDPAT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+++D+ +  V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RA
Sbjct: 65  GQVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQ-LLLANGARMADPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D+I ++T+  R+++++ +SG L +       ++  + + +E ++D
Sbjct: 124 FVNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRALRQEILDVLANVEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D +  +++++L     +   I   +   + G+I+RNG K  I+G  N GKSSL N
Sbjct: 184 YPEY-DEEEVTAQKLLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  T+D VEK G++R+   + 
Sbjct: 243 YLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIGVERSKKAIA 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD--------HLI 343
            ADLILLL + +       ++ +        I +  K+DL    T               
Sbjct: 303 QADLILLLLDGSQELTEEDRQLLELTAGKKRIIVLNKTDLGQKLTAAEIAKESGSEVIST 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    E L+EL   IK +     +      + +++R    L++  + L ++AS  E    
Sbjct: 363 SIMMKENLDELEALIKKLFFKGIENSNDQVLVTNQRQAGLLAKAKQQLADVASGLEAGMP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +   A  SLG+ITG    ++L++ +FS+FC+GK
Sbjct: 423 VDLVQIDFTGAWESLGEITGDSAPDELINDLFSQFCLGK 461


>gi|134096615|ref|YP_001101690.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans]
 gi|205829158|sp|A4GAN2|MNME_HERAR RecName: Full=tRNA modification GTPase mnmE
 gi|133740518|emb|CAL63569.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans]
          Length = 466

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 162/467 (34%), Positives = 240/467 (51%), Gaps = 28/467 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFGLD 57
           M  +   I A++T      I ++R+SG     V   +C   K      R A+   F   D
Sbjct: 1   MTFDSSPIAAIATAPGRGGIGVVRISGKDLSSVMRAVCGADKGSSLQARHATYLDFVNSD 60

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFS 114
           G ++D+GL I F +P S+TGED  E   HGG  V+  +L    +      LR+A PGEF+
Sbjct: 61  GSVIDQGLAIYFKAPHSYTGEDVLELQGHGGPVVLQMLLTRCLEAGADIGLRMAEPGEFT 120

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF N K+DL +AE + DLI + TE   + + + +SG  S    + +DK+T++R  +EA
Sbjct: 121 HRAFLNDKLDLAQAEGVIDLIEASTEAAAKSATQSLSGAFSKTIQELVDKITNLRMLVEA 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LDF E E++      +    +  ++  +    SQ   G ++R+G  IV+ G  N GKSS
Sbjct: 181 TLDFPE-EEIDFLEKSDARGQLTNIREALQRVFSQAAQGALLRDGLNIVLAGQPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKR 291
           L NALA  DVAIVT I GTTRD +   + +EG  V + DTAGIR   +  D VE+ GI+R
Sbjct: 240 LLNALAGSDVAIVTPIAGTTRDKVIETIQIEGIPVNVIDTAGIRDAADAGDEVERIGIER 299

Query: 292 TFLEVENADLILLLKEIN-----SKKEIS--FPKNIDFIFIGTKSDLYSTYT-----EEY 339
           T+  V+ AD+I+ + + +     + ++I+  FP N+  + +  K DL           + 
Sbjct: 300 TWAAVQTADVIVHMLDASRGPTRADEQITERFPANVPVMRVWNKIDLSGHRPAIDRMPDA 359

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK- 398
            H+  S TG    +L+      L    +       + +RHL  L     +LEMA+ +   
Sbjct: 360 THIYLSATGLLGMDLLRTELLHLVGWQQTGESLYLARERHLVALKSAHSHLEMAAQHAAH 419

Query: 399 -----DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                D  LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 DNEATDPALDLFAEELRLAQERLSSITGEFTSDDLLGVIFSRFCIGK 466


>gi|302877170|ref|YP_003845803.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B]
 gi|307687869|ref|ZP_07630315.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B]
 gi|302580027|gb|ADL54039.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B]
          Length = 459

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 151/460 (32%), Positives = 255/460 (55%), Gaps = 24/460 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------PFPRKASLRYFFGL 56
            E +TI A++T      ISIIR+SG S   V   + +           P          L
Sbjct: 2   KEFDTIAAIATPIGEGGISIIRISGNSALSVASKLFRSANGKDLMDIKPYTMRYGNIIDL 61

Query: 57  DGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           +   I+D+ ++    +P+SFT ED+ E + HGG+     ILE + K   +R+A+PGEF++
Sbjct: 62  ENEEIIDEVIVSYMKAPKSFTAEDTVEINCHGGLISTKRILEVVLK-QGVRIADPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I+++T++  + ++    G +S       ++L  + + IEA 
Sbjct: 121 RAFLNGRIDLSQAEAVMDIITAKTDLAMKSAVAQSGGRVSREIKVLREELLAMIAHIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D++  ++++ +ND+  L+  I   +   + G+I+R G   VI+G  N GKSSL
Sbjct: 181 VDYPE-DDLEEMTAEKTINDLNKLQERIEYLLKTAEEGKILREGLSTVIVGKPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  ++ AIVTD+ GTTRDV+   ++++G  +K+ DTAGIRETDD+VEK G++++  +
Sbjct: 240 LNLLTNENRAIVTDVAGTTRDVIEEYINMDGVPIKVIDTAGIRETDDLVEKIGVEKSKEK 299

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------- 342
           +E ADLI+L+ + + + +        + K+  +I +  KSDL     +E           
Sbjct: 300 IEEADLIILMLDSSRELDEEDLKIADYIKDKKYIVLFNKSDLKGKLKKEDIQCLNSKYMI 359

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400
            +S F GEG+E L   IK +  +   K    + ++ RH   L +    +  A    K+  
Sbjct: 360 DVSVFNGEGIERLKEIIKELFFSGEIKSQEILITNSRHKDVLYRANDNISNAIEALKNTS 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D+ + +LR A  + G+ITG    E L+D IF +FC+GK
Sbjct: 420 AIDLASIDLRNAWSNFGEITGDTLAEDLIDKIFKEFCLGK 459


>gi|190171230|gb|ACE63685.1| ThdF [Enterobacter pulveris]
          Length = 439

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 149/442 (33%), Positives = 237/442 (53%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P PR A    F   D   LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGKLARDVAQAVLG-KLPKPRYADYLPFKDSDNTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLE 352
           +   +             P+ +    +  K+D+        +        +S+ +GEG+E
Sbjct: 299 TTDAVDPAQIWPDFMARLPQALPITVVRNKADVTGEAPGLTEVNGHSLIRLSARSGEGVE 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L + +KS +      +     + +RHL  L +   +L+            +++AE LRL
Sbjct: 359 VLRDHLKSSMGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  SL +ITG    + LL  IF
Sbjct: 418 AQQSLSEITGEFTSDDLLGRIF 439


>gi|258544267|ref|ZP_05704501.1| tRNA modification GTPase TrmE [Cardiobacterium hominis ATCC 15826]
 gi|258520505|gb|EEV89364.1| tRNA modification GTPase TrmE [Cardiobacterium hominis ATCC 15826]
          Length = 446

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 156/450 (34%), Positives = 243/450 (54%), Gaps = 14/450 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   ++TI A++T      +SIIR+SG     +   +     P PR+A+L +     G  
Sbjct: 1   MQPARDTIAAIATPPGTGGVSIIRISGGEALAIAARV-SGITPAPRRATLAHIRDARGDT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ LL+ +P+P S+TGED+ E   HGGIAV   +L  +      RLA PGE++RRA+ N
Sbjct: 60  LDQALLLYYPAPHSYTGEDTLEIQGHGGIAVTQAVLAAVL-DAGARLAEPGEYTRRAYLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            KIDL +AE++ADLI++ ++   + +   + G+ S         L  +R +IEA LDF E
Sbjct: 119 NKIDLAQAEAIADLINARSQAAVKAANRSLQGDFSRQIETLAADLLALRIYIEAALDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++      ++   +      + + ++Q   G ++ +G  +VI G  NAGKSSL NAL 
Sbjct: 179 -EEIDFLREGDIAARLQGWGERLRTLLAQSTQGRLMNDGINLVIAGKPNAGKSSLLNALV 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT   GTTRD++   + + G  V I DTAG+RE  D+VE+EGI+RT   +  AD
Sbjct: 238 GEERAIVTAQAGTTRDIVRETILIHGMPVNILDTAGLREASDLVEQEGIRRTRQALNQAD 297

Query: 301 LILLLKE---INSKKEISFP---KNIDFIFIGTKSDLYSTYTEEY---DHLISSFTGEGL 351
           LILLL++   ++ + + + P    +   +    K+D      +        +S+ TG G+
Sbjct: 298 LILLLRDGSALDDRGDETLPPESADTPLLLAYNKADQTPPAVQAQHADGLWLSAKTGAGI 357

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLR 410
           + L + I +    +  +      + +RHL  L Q  R+ + A          ++IAE+LR
Sbjct: 358 DALRDAI-ACAVGRDSREESPYIARERHLRALHQAERHYQHALAQLHASQNGELIAEDLR 416

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA  +LG ITG V  + LL  IFS FCIGK
Sbjct: 417 LAHDALGSITGAVSSDDLLGHIFSSFCIGK 446


>gi|326390368|ref|ZP_08211927.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993645|gb|EGD52078.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus JW
           200]
          Length = 462

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 154/464 (33%), Positives = 249/464 (53%), Gaps = 26/464 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGL 56
           M    +TI A+ST    + I I+R+SG    ++   I K  KP      +  +L Y   +
Sbjct: 1   MKMVFDTIAAISTFPGEAGIGIVRISGDDALEIISKIFKPYKPKNIKKVKSHTLHYGHIV 60

Query: 57  DGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           D     + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF
Sbjct: 61  DPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLK-QGARLAEPGEF 119

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG+IDL +AE++ D+I+++T +  + + + +SG +     +  DK+  +   + 
Sbjct: 120 TKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLVHLL 179

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF E +DV+    KE+L     +  DI   I+  + G IIR G K  I+G  N GKS
Sbjct: 180 ALIDFPE-DDVEELERKEMLETAKEIVEDIDKLIASSESGMIIREGLKTAIIGKPNVGKS 238

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++ 
Sbjct: 239 SLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSK 298

Query: 294 LEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--------- 338
             +  ADLIL + + + +      +        + +F+  K DL     E+         
Sbjct: 299 EVLAEADLILFVLDASRELTKEDYEIFDILVGKNIVFVLNKIDLPKKIDEKELKNLTKDG 358

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLE-MASLN 396
               +S+    GL+EL + I +++      +    I ++ RH   L    +Y+E +    
Sbjct: 359 IIIEVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAI 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E++   D+I  +L  A   +GKITG    E L++ IF +FC+GK
Sbjct: 419 EREYSEDLITIDLNAALEQIGKITGETATEDLINQIFERFCVGK 462


>gi|260072625|gb|ACX30523.1| tRNA modification GTPase [uncultured SUP05 cluster bacterium]
          Length = 447

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 168/451 (37%), Positives = 248/451 (54%), Gaps = 15/451 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H + TI A+++      I I+R+SG  C ++ + +     P PR A    FF  DG  
Sbjct: 1   MSHNETTICALASSTGQGGIGIVRVSGARCIEIAKKMLG-HVPKPRYAHYGSFFNQDGVE 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +DKG+ + FP+P SFTGED  EF  HGGI V+  +LE  A       A PGEFS+RAF N
Sbjct: 60  IDKGVALFFPAPNSFTGEDVLEFQGHGGILVMRSLLES-AMALGSIAAEPGEFSKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DLL+AE++ADLI + +E   R ++  +SGE S         L  +R F+EA +DFS+
Sbjct: 119 GKMDLLQAEAVADLIDASSEQSARSALRSLSGEFSDQVNALTKALIELRVFVEATIDFSD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +S+ V   +  +K  I S ++  + G I+R G  +VI G  NAGKSSL NAL 
Sbjct: 179 -EEIDFLNSEGVGLKVAHIKESIESILTSAEQGAILREGLTVVIAGKPNAGKSSLLNALT 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++  AIVTDI GTTRDVL   + + G  + I DTAG+  ++D +E+EGIKR   E+E AD
Sbjct: 238 QRSSAIVTDIAGTTRDVLKETIHVNGMPLNIIDTAGLHVSEDKIEQEGIKRAHGEIERAD 297

Query: 301 LILLLKEINSKKEI-----SFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGE 349
           ++L++ +   K+       +  K+   + I  K DL       S        L+ +   +
Sbjct: 298 VVLMVFDAQDKEPDLSILPAVVKDKPLLLIKNKVDLTSESTGMSKVNGRTQILLCAKRAD 357

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           GL+ L  ++  I           + + KRH+  L   ++ +  A     +   +++AE+L
Sbjct: 358 GLDLLRQELSDIA-GLSDTGEGVLLARKRHIVALESALKSIHSALEQLDNGASELVAEDL 416

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R A  SLG ITG    + LL  IFS FCIGK
Sbjct: 417 RQAGQSLGSITGEFSSDDLLGEIFSSFCIGK 447


>gi|229051153|ref|ZP_04194697.1| tRNA modification GTPase mnmE [Bacillus cereus AH676]
 gi|228722216|gb|EEL73617.1| tRNA modification GTPase mnmE [Bacillus cereus AH676]
          Length = 458

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/459 (31%), Positives = 244/459 (53%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI+I+R+SG    +  + I K K       S    +G        
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKD-LTEVPSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G    ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVIDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLI 343
           ADL+L++        N  +++    +  DFI I  K+DL      E              
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|270158409|ref|ZP_06187066.1| tRNA modification GTPase TrmE [Legionella longbeachae D-4968]
 gi|289166752|ref|YP_003456890.1| GTPase [Legionella longbeachae NSW150]
 gi|269990434|gb|EEZ96688.1| tRNA modification GTPase TrmE [Legionella longbeachae D-4968]
 gi|288859925|emb|CBJ13911.1| GTPase [Legionella longbeachae NSW150]
          Length = 452

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 167/453 (36%), Positives = 254/453 (56%), Gaps = 22/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG------LDGR 59
           ETI AV+T      + I+RLSGP  + +   +   K   PR A+   F+        +  
Sbjct: 4   ETIVAVATPPGRGGVGILRLSGPQAYSIAISLNGNKTLQPRLATFCSFYSCSHSNEEEIS 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+G++I F  P SFTGED  E   HG   V++ + +E   +   RLA PGEFS RAF 
Sbjct: 64  VVDQGIMIYFKQPHSFTGEDVVEIQAHGSPVVLDMLTKECVHL-GARLARPGEFSERAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N KIDL +AE++ADLI + ++   R++ + + GE SS   Q  +++ H+R ++EA +DF 
Sbjct: 123 NDKIDLTQAEAIADLIQASSQTAARMAFKSLQGEFSSKIAQLNEQIIHLRLYVEAAIDFP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E E++   +  +V   +  L + + +  SQ   G I+R G  +VI G  NAGKS+L N L
Sbjct: 183 E-EEIDFLNDGKVAQLLQNLLDKLDAIRSQANQGVILREGLSVVIAGRPNAGKSTLINCL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A +DVAIVT+I GTTRDV+   + L+   + I DTAG+R++DDIVEKEGIKR + E++ A
Sbjct: 242 AGRDVAIVTEIAGTTRDVMREHILLDDIPLHIIDTAGLRDSDDIVEKEGIKRAWEELKKA 301

Query: 300 DLILLLKEINS-------KKEI--SFPKNIDFIFIGTKSDLY--STYTEEYDHLISSFTG 348
           D +LL+ +IN         +EI  S P  +  I +  K D    S   E +   + + +G
Sbjct: 302 DCVLLVVDINDLELHHDLSQEIRTSLPAEVPIITLFNKIDTLGRSAQVENHSVYLCAKSG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAE 407
           EG++ L   IK ++   ++       + +RHL  L +    L +      +    +++AE
Sbjct: 362 EGVDALKQLIKQVV--GYQPNEGQFLARRRHLRALDEAKDILLVGQQQLAEHRAGELLAE 419

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 420 DLRLAHQTLCEITGEFSSDDLLGRIFSSFCIGK 452


>gi|228994203|ref|ZP_04154103.1| tRNA modification GTPase mnmE [Bacillus pseudomycoides DSM 12442]
 gi|229000273|ref|ZP_04159842.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock3-17]
 gi|229007799|ref|ZP_04165384.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock1-4]
 gi|228753459|gb|EEM02912.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock1-4]
 gi|228759605|gb|EEM08582.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock3-17]
 gi|228765655|gb|EEM14309.1| tRNA modification GTPase mnmE [Bacillus pseudomycoides DSM 12442]
          Length = 458

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 246/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD---GR 59
           + +TI A+ST     AI+I+R+SG    +    I K K        ++ Y   +D    +
Sbjct: 2   DFDTIAAISTALGEGAIAIVRVSGEDAIEKVNRIFKGKDLTAVSSHTIHYGHIVDLDTDQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    ++M  M G LS L G+   ++    + +E ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSKLIGRLRQEILETLAHVEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++ +I   +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRGEIKKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+DIVE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMGQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEEYD---------HLIS 344
           DL+L++        N  +++    +  DFI I  K+DL      +              S
Sbjct: 301 DLVLIVVNYSEALTNEDEDLFRAVRGKDFIVIVNKTDLPKQIDMKRVTELAGKNRMITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               +G++EL   I  +      +    +  S+ RH+  L+Q  + + +     E    +
Sbjct: 361 LIEEKGVDELEKAIADLFFEGTIESADMTYVSNARHIGLLTQAEKTIGDAIEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|28209869|ref|NP_780813.1| tRNA modification GTPase TrmE [Clostridium tetani E88]
 gi|32171803|sp|Q899S2|MNME_CLOTE RecName: Full=tRNA modification GTPase mnmE
 gi|28202304|gb|AAO34750.1| thiophene and furan oxidation protein thdF [Clostridium tetani E88]
          Length = 459

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 158/460 (34%), Positives = 255/460 (55%), Gaps = 24/460 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDG 58
            + +TI A+ST      ISIIR+SG     +   + K K        +  +++Y   ++ 
Sbjct: 2   KDFDTIAAISTVLGEGGISIIRISGDKSLAIVNKLFKAKNGKDILDMKPYTMKYGHIIEQ 61

Query: 59  R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ILD+ L+    +P SFT ED+ E + HGG+     I +E+ K   +R+A PGEF++
Sbjct: 62  DTKNILDEVLISYMKAPRSFTAEDTVEINCHGGVTPTKKIFQEVIKA-GVRVAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I S+TE+  + ++    G++S       + L    + IEA 
Sbjct: 121 RAFLNGRIDLTQAEAVIDIIRSKTELSMKSAVSQSIGKVSEEINVLRENLIETIAHIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E ED++  +S +V   I  +  ++   +   + G+IIR G  +VI+G  N GKSSL
Sbjct: 181 VDYPE-EDLEEITSSQVQEKIEKIIEELERLLDTSEEGKIIREGLDVVIVGKPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  +  AIVT+IPGTTRDV+   ++L+G  +KI DTAGIRET+D+VEK G++R+  +
Sbjct: 240 LNALLSEKRAIVTEIPGTTRDVIEEYINLDGIPIKIIDTAGIRETEDLVEKIGVERSKEK 299

Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--------YDH 341
           +  ADL++L+ + ++K      + I + K+  +I +  KSDL S   +            
Sbjct: 300 INEADLVILVLDSSNKLNDEDYEIIEYIKDKKYITLLNKSDLESKINKSDLEDLKLYNII 359

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
            IS+  G GLE+L   IK +      +    I ++ RH   L +       A    E   
Sbjct: 360 EISAKMGFGLEDLKEYIKDLFFKGDIQTDSIIITNTRHKEALIRAKESCNTALKALENTL 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D+ + +++ A +SLG+ITG    E ++D IFS+FC+GK
Sbjct: 420 AIDLASIDIKNAWLSLGEITGDTLEEDIIDKIFSEFCLGK 459


>gi|312871302|ref|ZP_07731400.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 3008A-a]
 gi|312874855|ref|ZP_07734874.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2053A-b]
 gi|311089600|gb|EFQ48025.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2053A-b]
 gi|311093316|gb|EFQ51662.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 3008A-a]
          Length = 461

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 146/456 (32%), Positives = 249/456 (54%), Gaps = 24/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ D+I ++T+  R+++M+ + G L     +   +L +  +  E ++D+ E
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHEEVNIDYPE 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL N L+
Sbjct: 187 Y-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLLNYLS 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIVT+I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +  +D
Sbjct: 246 KEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAITESD 305

Query: 301 LILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISSF 346
           L+LLL   + +      K +   ++   I I  K+D  +  T++            IS  
Sbjct: 306 LVLLLINSSEELTEEDQKLLELTQDKKRIIILNKADQVAKITKKDIQKITDSPIVTISVL 365

Query: 347 TGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404
             + +  L   IKS+            + +++R    L +  + L E       +  LD+
Sbjct: 366 KKKNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQNDLLRKAKQSLIEAIEAINDNMPLDL 425

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 426 VQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461


>gi|190171224|gb|ACE63682.1| ThdF [Enterobacter pulveris]
 gi|190171234|gb|ACE63687.1| ThdF [Enterobacter pulveris]
          Length = 439

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 148/442 (33%), Positives = 237/442 (53%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P PR A    F   D   LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGKLARDVAQAVLG-KLPKPRYADYLPFKDSDNTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNTVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLE 352
           +   +             P+ +    +  K+D+        +        +S+ +G+G+E
Sbjct: 299 TTDAVDPAQIWPDFMARLPQTLPITVVRNKADVTGEAPGLTEVNGHSLIRLSARSGDGVE 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L + +KS +      +     + +RHL  L +   +L+            +++AE LRL
Sbjct: 359 VLRDHLKSSMGFD-TNMEGGFLARRRHLQALEEAAAHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  SL +ITG    + LL  IF
Sbjct: 418 AQQSLSEITGEFTSDDLLGRIF 439


>gi|225181151|ref|ZP_03734597.1| tRNA modification GTPase TrmE [Dethiobacter alkaliphilus AHT 1]
 gi|225168120|gb|EEG76925.1| tRNA modification GTPase TrmE [Dethiobacter alkaliphilus AHT 1]
          Length = 460

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 157/460 (34%), Positives = 242/460 (52%), Gaps = 24/460 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGR 59
            ++TI A++T      I I+R+SGP    + + + +  +P     S + ++G      G 
Sbjct: 2   HEDTIAAIATPVGEGGIGIVRISGPQAKDIGKELFRFHRPVQNPQSHKLYYGHVIGEGGE 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ LL    SP ++T ED  E + HGGI  +   LE   ++   RLA  GEF++RAF 
Sbjct: 62  VLDEALLAFMHSPRTYTTEDVVEINCHGGIMPLKKTLERTLQL-GARLAEAGEFTQRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++  +I + TE   +LS+  + G LS   G+   +L  + + +EA +DF 
Sbjct: 121 NGRIDLAQAEAVIQIIRARTETAMQLSVAQLQGRLSQKVGEIRQQLLSVLAHMEASIDFP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV++ +  ++         +I   +     G I+R G +  I+G  N GKSSL NAL
Sbjct: 181 EHQDVEDVAFVQLREAAELAHKEIDLLLQTADKGRILREGLRTAIVGRPNVGKSSLLNAL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K+  AIVTDIPGTTRDVL   ++L G  + + DTAGIRET D VEK G++R+   +  A
Sbjct: 241 LKEQRAIVTDIPGTTRDVLEESVNLGGIALTMVDTAGIRETTDTVEKMGVERSREALGQA 300

Query: 300 DLILLLKEINSK---KEISFPK---NIDFIFIGTKSDLYSTYTEEYDHLISSFT------ 347
           DL+L + + +     ++I   +       I I  K+DL S+  +    L S         
Sbjct: 301 DLVLYVLDASDDLTAEDIELLQAAGEKPLIVIVNKTDLVSSPADVTTKLHSELASVPVVP 360

Query: 348 -----GEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDC 400
                  GL+EL   I S+      K    ++ +  RH   LS+++ +L +M S  E   
Sbjct: 361 MSVVENRGLQELEEAIVSLVFQGDVKPSQSAMVTSARHKDALSRSLTFLQDMLSALESGF 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++A +L  A  +LG+ITG      L D IFS FCIGK
Sbjct: 421 AIDLLAIDLHSALDALGEITGETVGADLADEIFSAFCIGK 460


>gi|309804055|ref|ZP_07698136.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 11V1-d]
 gi|308163823|gb|EFO66089.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 11V1-d]
          Length = 461

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 146/456 (32%), Positives = 249/456 (54%), Gaps = 24/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTEKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ D+I ++T+  R+++M+ + G L     +   +L +  +  E ++D+ E
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHEEVNIDYPE 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL N L+
Sbjct: 187 Y-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLLNYLS 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIVT+I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +  +D
Sbjct: 246 KEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAITESD 305

Query: 301 LILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISSF 346
           L+LLL   + +      K +   ++   I I  K+D  +  T++            IS  
Sbjct: 306 LVLLLINSSEELTEEDQKLLELTQDKKRIVILNKADQVAKITKKDIQKITDSPIVTISVL 365

Query: 347 TGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404
             + +  L   IKS+            + +++R    L +  + L E       +  LD+
Sbjct: 366 KKQNMTGLEEAIKSLFLQGIADSKSEVMVTNQRQNDLLRKAKQSLIEAIEAINDNMPLDL 425

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 426 VQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461


>gi|77166532|ref|YP_345057.1| tRNA modification GTPase TrmE [Nitrosococcus oceani ATCC 19707]
 gi|123593187|sp|Q3J6L9|MNME_NITOC RecName: Full=tRNA modification GTPase mnmE
 gi|76884846|gb|ABA59527.1| tRNA modification GTPase trmE [Nitrosococcus oceani ATCC 19707]
          Length = 458

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/450 (35%), Positives = 256/450 (56%), Gaps = 18/450 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     ++ I+R+SGP C Q+ E +  +  P PR A+  +F    G ILD+G
Sbjct: 13  SDTIAAIATPPGQGSVGIVRVSGPFCRQIAEQVTGRVPP-PRYATFCHFRNRYGEILDQG 71

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGED  E   HGG A+++ +L  + ++  +RLA PGEFS RAF N KID
Sbjct: 72  LILYFPGPHSFTGEDVLELQGHGGPAIMDWLLSSVLQL-GVRLARPGEFSERAFLNNKID 130

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI S +E   R ++  + GE S+      ++LT +R  +EA++DFS+ ED+
Sbjct: 131 LAQAEAIADLIESASEQAARSALRSLHGEFSAQIQTLREQLTELRCVVEANIDFSD-EDI 189

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                  V   +  +++ + S     + G ++R G ++V+ G  N GKSSL N LA  + 
Sbjct: 190 DFIERGMVAERLKEIQSTLQSIHRSARQGALLREGVRVVLAGRPNVGKSSLHNRLAGFEA 249

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTD+PGTTRD+L  ++ ++G  + +SDTAG+  + D +E+EG++RT  E+ +AD +LL
Sbjct: 250 AIVTDVPGTTRDLLRENITIDGLPIHLSDTAGLHNSKDTIEQEGMRRTREELIHADHVLL 309

Query: 305 LKE-----INSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGL 351
           + +       +++ I    P ++ +  I  K DL       ++ L       S+ TG G+
Sbjct: 310 VADDQSGLTEAEQAILDELPDDVTYTLIFNKIDLSGAPAGRWEELQGIALRLSALTGAGM 369

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDIIAENLR 410
           + L  ++K       ++      + +RHL  L +    + +A     D G  +I+AE LR
Sbjct: 370 DLLCQRLKECAGFD-RESEGCFSARRRHLEALQRAGAAVVVARKILGDKGAEEILAEELR 428

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  +L +ITG    + LL  IFS FCIGK
Sbjct: 429 QAQNALAEITGEYRSDDLLGEIFSTFCIGK 458


>gi|254225543|ref|ZP_04919152.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V51]
 gi|125621863|gb|EAZ50188.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V51]
          Length = 449

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 154/437 (35%), Positives = 238/437 (54%), Gaps = 21/437 (4%)

Query: 22  IIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSA 81
           IIR+SGP    V + +  +    PR A    F   DG+ LD+G+ + FP+P SFTGED  
Sbjct: 16  IIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGIALFFPNPHSFTGEDVL 74

Query: 82  EFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141
           E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+DL +AE++ADLI + +E 
Sbjct: 75  ELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQAEAIADLIDASSEQ 134

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
             + +++ + GE S      ++ L H+R ++EA +DF E E++   +  +V  D+  + +
Sbjct: 135 AAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE-EEIDFLADGKVSADLQTIID 193

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           ++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+ AIVTDI GTTRDVL   
Sbjct: 194 NLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREH 253

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI-- 314
           + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L + +         ++I  
Sbjct: 254 IHIDGMPLHIIDTAGLRDASDTVEKIGIERAWEEIRQADRVLFMVDGTTTEATDPQDIWP 313

Query: 315 ----SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                 P+NI    I  K+D            +     +S+ TG+G++ L   +K  +  
Sbjct: 314 DFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTGQGVDALRQHLKECM-G 372

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCV 423
                     + +RHL  L +   +L +     E     +I+AE LR+A   L +ITG  
Sbjct: 373 FSGNQEGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAEELRIAQQHLNEITGEF 432

Query: 424 DVEQLLDIIFSKFCIGK 440
             + LL  IFS FCIGK
Sbjct: 433 SSDDLLGRIFSSFCIGK 449


>gi|190171188|gb|ACE63664.1| ThdF [Enterobacter cancerogenus]
          Length = 439

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 150/442 (33%), Positives = 237/442 (53%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDSDGTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVMKDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG++
Sbjct: 299 TTDAVDPADIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
           +L N +K  +      +     + +RHL  L +   +L             +++AE LRL
Sbjct: 359 DLRNHLKQSMGFD-TSMEGGFLARRRHLQALEEAANHLVQGKAQLIGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQNLSEITGEFTSDDLLGRIF 439


>gi|190171228|gb|ACE63684.1| ThdF [Enterobacter pulveris]
 gi|190171232|gb|ACE63686.1| ThdF [Enterobacter pulveris]
          Length = 439

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 148/442 (33%), Positives = 237/442 (53%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P PR A    F   D   LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGKLARDVAQAVLG-KLPKPRYADYLPFKDSDNTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLE 352
           +   +             P+ +    +  K+D+        +        +S+ +G+G+E
Sbjct: 299 TTDAVDPAQIWPDFMARLPQTLPITVVRNKADVTGEAPGLTEVNGHSLIRLSARSGDGVE 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L + +KS +      +     + +RHL  L +   +L+            +++AE LRL
Sbjct: 359 VLRDHLKSSMGFD-TNMEGGFLARRRHLQALEEAAAHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  SL +ITG    + LL  IF
Sbjct: 418 AQQSLSEITGEFTSDDLLGRIF 439


>gi|307265442|ref|ZP_07546998.1| tRNA modification GTPase TrmE [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919556|gb|EFN49774.1| tRNA modification GTPase TrmE [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 462

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 153/464 (32%), Positives = 248/464 (53%), Gaps = 26/464 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGL 56
           M    +TI A+ST    + I I+R+SG    ++   I K  KP      +  +L Y   +
Sbjct: 1   MKMVFDTIAAISTFPGEAGIGIVRISGDDALEIISKIFKPYKPKDIKKVKSHTLHYGHIV 60

Query: 57  DGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           D     + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF
Sbjct: 61  DPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLK-QGARLAEPGEF 119

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG+IDL +AE++ D+I+++T +  + + + +SG +     +  DK+  +   + 
Sbjct: 120 TKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLVHLL 179

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF E +DV+    KE+L     +  DI   I   + G +IR G K  I+G  N GKS
Sbjct: 180 ALIDFPE-DDVEELERKEMLETAKEIVEDIDKLIVSSESGRVIREGLKTAIIGKPNVGKS 238

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++ 
Sbjct: 239 SLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSK 298

Query: 294 LEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--------- 338
             +  ADLIL + + + +      +        + +F+  K DL     E+         
Sbjct: 299 EVLAEADLILFVLDASRELTKEDYEIFDILVGKNIVFVLNKIDLPKKIDEKELKNLTKDG 358

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLE-MASLN 396
               +S+    GL+EL + I +++      +    I ++ RH   L    +Y+E +    
Sbjct: 359 IIIEVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAI 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E++   D+I  +L  A   +GKITG    E L++ IF +FC+GK
Sbjct: 419 EREYSEDLITIDLNAALEQIGKITGETATEDLINQIFERFCVGK 462


>gi|190171226|gb|ACE63683.1| ThdF [Enterobacter pulveris]
          Length = 439

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 149/442 (33%), Positives = 237/442 (53%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P PR A    F   D   LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGKLARDVAQAVLG-KLPKPRYADYLPFKDSDNTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLE 352
           +   +             P+ +    +  K+D+        +        +S+ +GEG+E
Sbjct: 299 TTDAVDPAQIWPDFMARLPQALPITVVRNKADVTGEAPGLTEVNGHSLIRLSARSGEGVE 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L + +KS +      +     + +RHL  L +   +L+            +++AE LRL
Sbjct: 359 VLRDHLKSSMGFD-TNMEGGFLARRRHLQALEEAAAHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  SL +ITG    + LL  IF
Sbjct: 418 AQQSLSEITGEFTSDDLLGRIF 439


>gi|312869237|ref|ZP_07729409.1| tRNA modification GTPase TrmE [Lactobacillus oris PB013-T2-3]
 gi|311095258|gb|EFQ53530.1| tRNA modification GTPase TrmE [Lactobacillus oris PB013-T2-3]
          Length = 463

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 139/462 (30%), Positives = 236/462 (51%), Gaps = 24/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
           N E +TI A+ST      ISIIR+SG     V + + +  K   + AS    +G      
Sbjct: 3   NSENDTIAAISTPVGEGGISIIRISGEDAVAVAKRLYRGSKDLDQVASHTINYGHIVDPD 62

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G  +D+ ++ V  +P ++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 63  TGAEVDEVMVSVMRAPHTYTCEDVIEINCHGGLLATNRILQ-LVLSYGARMAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL ++E++ DLI ++T+   ++++  + G+LS L       +  + + +E ++
Sbjct: 122 AFLNGRIDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRHLRQDILDVLAQVEVNI 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  ++K +    L ++  I + +   K G+++R G    I+G  N GKSSL 
Sbjct: 182 DYPEYDAVEEMTTKMLKEKALDIQQRIQALLKTAKQGKVLREGLATAIIGRPNVGKSSLL 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTD+ GTTRDV+   ++++G  +K+ DTAGIR+TDD VEK G++R+   +
Sbjct: 242 NTLLHEDKAIVTDVAGTTRDVIEEYVNVDGVPLKLIDTAGIRDTDDTVEKIGVERSKKAL 301

Query: 297 E---------------NADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           +                A+   LL     K+ I      D        +L      +   
Sbjct: 302 DAADLILLLIDSSAPLTAEDRELLTATQGKQRIVILNKTDLPRQVDLDELKKLTAGDALI 361

Query: 342 LISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEK 398
             S    EG+++L  +I  +  N+         + ++ RH+  L Q    L ++      
Sbjct: 362 ETSIVKHEGMDQLGQQISRMFFNEGIESSQNNVMVTNARHIGLLHQANAALSDVLKGINA 421

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 422 GMPVDLVQIDMTRCWDLLGEITGDSYQDELLDQLFSQFCLGK 463


>gi|47568683|ref|ZP_00239380.1| tRNA modification GTPase TrmE [Bacillus cereus G9241]
 gi|228988713|ref|ZP_04148798.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|47554671|gb|EAL13025.1| tRNA modification GTPase TrmE [Bacillus cereus G9241]
 gi|228771025|gb|EEM19506.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 458

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 245/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +    I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLIS 344
           DL+L++        N  +++    +  DFI I  K+DL      E              S
Sbjct: 301 DLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVIELAEGNRVITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    +
Sbjct: 361 LIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|206975796|ref|ZP_03236707.1| tRNA modification GTPase TrmE [Bacillus cereus H3081.97]
 gi|217962976|ref|YP_002341554.1| tRNA modification GTPase TrmE [Bacillus cereus AH187]
 gi|222098961|ref|YP_002533019.1| tRNA modification gtpase trme [Bacillus cereus Q1]
 gi|229142233|ref|ZP_04270757.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST26]
 gi|229199692|ref|ZP_04326335.1| tRNA modification GTPase mnmE [Bacillus cereus m1293]
 gi|206745890|gb|EDZ57286.1| tRNA modification GTPase TrmE [Bacillus cereus H3081.97]
 gi|217065834|gb|ACJ80084.1| tRNA modification GTPase TrmE [Bacillus cereus AH187]
 gi|221243020|gb|ACM15730.1| tRNA modification GTPase TrmE [Bacillus cereus Q1]
 gi|228583787|gb|EEK41962.1| tRNA modification GTPase mnmE [Bacillus cereus m1293]
 gi|228641251|gb|EEK97558.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST26]
          Length = 458

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 245/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +    I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLIS 344
           DL+L++        N  +++    +  DFI I  K+DL      E              S
Sbjct: 301 DLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRVITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    +
Sbjct: 361 LIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|89902988|ref|YP_525459.1| tRNA modification GTPase TrmE [Rhodoferax ferrireducens T118]
 gi|122478002|sp|Q21QM5|MNME_RHOFD RecName: Full=tRNA modification GTPase mnmE
 gi|89347725|gb|ABD71928.1| tRNA modification GTPase trmE [Rhodoferax ferrireducens T118]
          Length = 469

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 160/470 (34%), Positives = 244/470 (51%), Gaps = 33/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +   ++ I A++T     A+ I+R+SG S   + + +  ++    R+A+   F       
Sbjct: 3   LPRHQDPIVAIATAPGRGAVGIVRVSGKSIGSLMQALLGRQL-RAREATYLPFLDRSQLA 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-------------NLRL 107
           +D+G+ + FP+P SFTGED  E   HGG  V+  +L    +                LR 
Sbjct: 62  IDQGIALYFPAPHSFTGEDVLELQAHGGPVVLQLLLARCLEAGAELDPVSQMPRLVGLRP 121

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEFS RAF N KIDL +AE++ADLI + TE   R +   +SG  S       + L H
Sbjct: 122 ALPGEFSERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSQEIHILREALIH 181

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA LDF E E++      +    +  L+  + S + +   G ++R G  +VI G 
Sbjct: 182 LRMLVEATLDFPE-EEIDFLRQADARGQLSDLQQSLQSVLQKASQGALLREGITVVIAGQ 240

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKSSL NALA  ++AIVT I GTTRD +   + +EG  V + DTAG+R++DD++EK 
Sbjct: 241 PNVGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPVHVIDTAGLRDSDDVIEKI 300

Query: 288 GIKRTFLEVENADLILLLKEINSKKEIS---------------FPKNIDFIFIGTKSDLY 332
           GI RT+  +E AD +L L ++  K                      ++  I I  K+D+ 
Sbjct: 301 GIARTWDVIEAADAVLFLHDLTRKNATDYIAADAVIAEAIAGKLSASVPVIEIWNKADVI 360

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
               ++    +S+ TG GL+ L  K+  ++  +  K      + +RH+  L +T  +L  
Sbjct: 361 DRPCQQAGLQLSAKTGAGLDTLRRKLLELVGWQ-SKPEGVYMARERHVQALHRTAAHLMT 419

Query: 393 A--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   L  K   LD++AE LRLA  +LG+ITG    + LL +IFS+FCIGK
Sbjct: 420 AGFHLEAKAQALDLLAEELRLAQNALGEITGDFSSDDLLGVIFSRFCIGK 469


>gi|81429490|ref|YP_396491.1| tRNA modification GTPase TrmE [Lactobacillus sakei subsp. sakei
           23K]
 gi|123563597|sp|Q38UE9|MNME_LACSS RecName: Full=tRNA modification GTPase mnmE
 gi|78611133|emb|CAI56186.1| tRNA modification GTPase trmE [Lactobacillus sakei subsp. sakei
           23K]
          Length = 462

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 143/460 (31%), Positives = 243/460 (52%), Gaps = 25/460 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST     AISI+RLSG     + + + + K    + AS    +G       
Sbjct: 6   TEFDTITAISTPPGEGAISIVRLSGDDSLAIIKRVYRGKD-LDKVASHTINYGHIIDPKT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ ++ V  +P++FT ED  E + HGGI   N IL+ L      R+A PGEF++RA
Sbjct: 65  DAVVDEVMVSVMRAPKTFTREDVIEINCHGGIVATNRILQ-LLMSYGARMAEPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ DLI ++T+   +++++ + G L+ L      ++  + + +E ++D
Sbjct: 124 FLNGRIDLTQAESVMDLIRAKTDRAMQVAVDQLDGSLTHLIKNLRQEILEVLAQVEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D    +++ +L     +K  I   +   + G+++R G    I+G  N GKSSL N
Sbjct: 184 YPEY-DTDEMTTRILLEKAELVKGRIGELLQTAQQGKVLREGLATAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIVTD+ GTTRDVL   +++ G  +K+ DTAGI +T+D VEK G++R+   + 
Sbjct: 243 HLLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTEDKVEKIGVERSRAAIT 302

Query: 298 NADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHL 342
            ADLILL+        I  ++ I+   +   I I  K+DL +             +    
Sbjct: 303 KADLILLVLNQSEPLTIEDRELITATTDKKRIIILNKTDLPNQLDLDELQTLVRADEVIQ 362

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYL-EMASLNEKDC 400
            S  T EG+ +L  +I  +     +    + + ++ R +  L+Q  + L E+ S      
Sbjct: 363 TSILTSEGVTDLEAQIAKLFFGGIENSQSTVMITNARQIGLLNQAQQSLDEVISGIAAGM 422

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 423 PVDLVQIDMTNCWDKLGEITGDSAPDELITELFSQFCLGK 462


>gi|190171220|gb|ACE63680.1| ThdF [Enterobacter kobei]
          Length = 439

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 150/442 (33%), Positives = 238/442 (53%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDSDGTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  + +D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNQVMSDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG++
Sbjct: 299 TTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
           +L N +K  +      +     + +RHL  L +   +L             +++AE LRL
Sbjct: 359 DLRNHLKQSMGFD-TSMEGGFLARRRHLQALEEAANHLVQGKAQLIGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQNLSEITGEFTSDDLLGRIF 439


>gi|42784680|ref|NP_981927.1| tRNA modification GTPase TrmE [Bacillus cereus ATCC 10987]
 gi|81408275|sp|Q72WU3|MNME_BACC1 RecName: Full=tRNA modification GTPase mnmE
 gi|42740612|gb|AAS44535.1| tRNA modification GTPase TrmE [Bacillus cereus ATCC 10987]
          Length = 458

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 245/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +    I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLIS 344
           DL+L++        N  +++    +  DFI I  K+DL      E              S
Sbjct: 301 DLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRIITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    +
Sbjct: 361 LIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|190171250|gb|ACE63695.1| ThdF [Escherichia vulneris]
          Length = 439

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 153/442 (34%), Positives = 239/442 (54%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPQGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDADGTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  + ND+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNQVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG+E
Sbjct: 299 TTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVE 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L + +K  +      +     + +RHL  L +  R+LE            +++AE LRL
Sbjct: 359 ALRSHLKQSMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQNLSEITGEFTSDDLLGRIF 439


>gi|319899518|ref|YP_004159615.1| tRNA modification GTPase [Bartonella clarridgeiae 73]
 gi|319403486|emb|CBI77066.1| tRNA modification GTPase [Bartonella clarridgeiae 73]
          Length = 435

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 191/436 (43%), Positives = 270/436 (61%), Gaps = 3/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFAVS+G LPS ++I+RLSGP    V + +C    P  R          DG  LD  L
Sbjct: 2   DTIFAVSSGLLPSGVAIVRLSGPHVKNVVKTLCG-CLPKARLMHYGDLIARDGSFLDSAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED AEFH+HG  AVVN  L+EL      RLA  GEFSRRAF  GK+DL
Sbjct: 61  TVFFPAPHSFTGEDCAEFHLHGSKAVVNRFLDELTTFEECRLAEAGEFSRRAFIEGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AESLADLI +ETE QRRL++ G SG L+ LY  W  KL   R+ IEA+LDFS+E D+ 
Sbjct: 121 IQAESLADLIQAETESQRRLAIMGTSGTLTKLYRDWRHKLMTARALIEAELDFSDENDIP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +  S ++  DI  L + +  HIS G+   I+R+G +IVI G  N+GKSS+ N L+ + VA
Sbjct: 181 DSVSDKIWQDIEKLYHSLCEHISAGERASILRDGIRIVIAGAPNSGKSSIINRLSGRSVA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++  GTTRD L + L   G LV  +DTAG+R+T + +E  GI+     +  ADL++ +
Sbjct: 241 IVSEEEGTTRDALEVRLVFGGLLVFFTDTAGLRKTKNKIELLGIETAKQHIMEADLVISV 300

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            ++N+ +E++ PK + +   +G K DL       +    S+ +G   +  I +I+   S 
Sbjct: 301 YDMNNPQEVNLPKTSAEIWHVGNKLDLCEGDKIRWPIQFSTLSGLNFDYFIKEIELFCSR 360

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +  ++  ++P+ KR L  L +T   +   S+N     L + AE+LR AS +LG+ITG +D
Sbjct: 361 RVTEIGNAVPARKRQLQLLKKTAEEINT-SINSTSLDLSLRAEHLRRASHALGRITGDID 419

Query: 425 VEQLLDIIFSKFCIGK 440
           VE LLDIIFS+FC+GK
Sbjct: 420 VEDLLDIIFSRFCVGK 435


>gi|331092106|ref|ZP_08340937.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402307|gb|EGG81878.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 463

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 156/458 (34%), Positives = 242/458 (52%), Gaps = 23/458 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDGR 59
           +K+TI A++T    + I I+R+SG    ++ + I + KK       +  ++ Y +  DG 
Sbjct: 8   KKDTIAAIATAMSSAGIGIVRISGREAIEIIQKIFRGKKEKNFAEEKTYTIHYGYIADGE 67

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ L+++  +P S+TGED+ E   HGGI VV  I+E + K    R A PGEF++RAF
Sbjct: 68  EIIDEVLVMLMKAPHSYTGEDTVEIDCHGGIYVVKKIMETVIK-YGARPAEPGEFTKRAF 126

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ D+I S+ E   + S+  + G +    G+  +++ +  +FIE  LD 
Sbjct: 127 LNGKMDLSQAEAVIDIIDSKNEYALKSSVSQLKGSVQKKIGEIREEILYHTAFIETALDD 186

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E   V  +  + +   +  L  +I   +     G II+ G K VI+G  NAGKSSL N 
Sbjct: 187 PEHISVDGY-GETLKKVVDNLLEEIRRLLISADNGRIIKEGIKTVIVGKPNAGKSSLLNV 245

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVTDI GTTRDVL  ++ L+G  + I DTAGIRET D+VEK G+ +       
Sbjct: 246 LVGEERAIVTDIEGTTRDVLEENIQLQGVSLNIMDTAGIRETKDVVEKIGVDKAKNHANE 305

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTE--------EYDHLIS 344
           ADLI+ + +       N ++ I   ++   I +  KSDL    T+        +   +IS
Sbjct: 306 ADLIIYVADASRPLDDNDEEIIEMIRDKQAIVLLNKSDLDMVVTKKELQEKLNKPMIVIS 365

Query: 345 SFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGL 402
           +   +G++EL   +K +  +           ++ RH   L      LE   +  E     
Sbjct: 366 AKEEQGIKELEETLKEMFFHGDISFNDEVYITNIRHKTALQDAAESLEKVLISIENGMPE 425

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 426 DFYSIDLLDAYESLGSITGETIGEDLVNEIFSKFCMGK 463


>gi|190171172|gb|ACE63656.1| ThdF [Citrobacter sp. OD1158_06]
          Length = 439

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 151/442 (34%), Positives = 240/442 (54%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKAREVAETVLG-KLPKPRYADYLPFKDEDGSALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  + +D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNSVISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG++
Sbjct: 299 TTDAVDPADIWPDFIARLPAKLPITVVRNKADITGETLGLSEVNGHSLVRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +  +   +     + +RHL  L++   +LE            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFE-TNMEGGFLARRRHLQALAEAAEHLEQGKSQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQNLSEITGEFTSDDLLGRIF 439


>gi|307211526|gb|EFN87614.1| tRNA modification GTPase mnmE [Harpegnathos saltator]
          Length = 434

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 194/435 (44%), Positives = 273/435 (62%), Gaps = 4/435 (0%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+S+G LPS +++IRLSG +   V + +     P PR   L  F    G +LD+GL+
Sbjct: 3   TIFALSSGLLPSGVAVIRLSGAAVKDVLQRVAGF-VPEPRMMVLATFRAESGEVLDRGLV 61

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP+P+SFTGED AEFH+HGG AVV   L+EL+  P+ R+A  GEFSRRAF  GK DL 
Sbjct: 62  VYFPAPKSFTGEDCAEFHLHGGKAVVTRFLDELSTFPDCRVAEAGEFSRRAFAEGKFDLT 121

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           EAE LADLI +ETE QRRL+M G SG L+ LY  W   L   R+ IEA+LDF++E DV  
Sbjct: 122 EAEGLADLIHAETESQRRLAMMGASGALADLYRNWRSTLVQARAMIEAELDFADEGDVPG 181

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             +  + +++  L   + +HI      +++R+G KIVI G  NAGKSS+ N LA +DVAI
Sbjct: 182 SVADRIWDNVSQLHKAVLTHIESAARADVMRDGVKIVIAGAPNAGKSSVINRLAARDVAI 241

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+  GTTRD L I L L G  V ++DTAG+R+T++ +EK GI+     +  ADLILLL 
Sbjct: 242 VTEEAGTTRDALEIRLVLGGLPVLVTDTAGLRQTENHIEKMGIESAAARIGEADLILLLD 301

Query: 307 EINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           ++++ + +  P    +   IG K DL     + +   +S+ +G G ++ I ++      K
Sbjct: 302 DMHNPQLVELPPTEAEIWSIGNKLDLGEGDRKRWPVQLSARSGAGWQDFIGRLTVFCRKK 361

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425
              +   +P  +RH   L +    L+ A  +E    L++ AE+LRLAS +LGKITG +DV
Sbjct: 362 TVDMGEIVPVRRRHTELLKRCALALQHALYDE--AALELRAEHLRLASDALGKITGDIDV 419

Query: 426 EQLLDIIFSKFCIGK 440
           E LL++IFS+FCIGK
Sbjct: 420 EDLLNVIFSEFCIGK 434


>gi|190171174|gb|ACE63657.1| ThdF [Citrobacter koseri]
          Length = 439

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 150/442 (33%), Positives = 238/442 (53%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNNLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG++
Sbjct: 299 TTDAVDPAEIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +      +     + +RHL  L++   +L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLQQGKSQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|190171184|gb|ACE63662.1| ThdF [Enterobacter asburiae]
          Length = 439

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 150/442 (33%), Positives = 237/442 (53%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDTDGTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNQVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG++
Sbjct: 299 TTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
           +L N +K  +      +     + +RHL  L +   +L             +++AE LRL
Sbjct: 359 DLRNHLKQSMGFD-TSMEGGFLARRRHLQALEEAANHLVQGKAQLIGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQNLSEITGEFTSDDLLGRIF 439


>gi|229035142|ref|ZP_04189088.1| tRNA modification GTPase mnmE [Bacillus cereus AH1271]
 gi|228728208|gb|EEL79238.1| tRNA modification GTPase mnmE [Bacillus cereus AH1271]
          Length = 458

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 244/459 (53%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI+I+R+SG    +    I K K       S    +G        
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKD-LTEVPSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSILRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLI 343
           ADL+L++        N  +++    +  DFI I  K+DL  T   E              
Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQTIDMERVTELAAGNRVITT 359

Query: 344 SSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    
Sbjct: 360 SLIEEQGIDELEKAIADLFFEGAIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|190171178|gb|ACE63659.1| ThdF [Citrobacter koseri]
          Length = 439

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 150/442 (33%), Positives = 239/442 (54%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG++
Sbjct: 299 TTDAVDPAEIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +      +     + +RHL  L++  ++L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAKHLQQGKSQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|226326138|ref|ZP_03801656.1| hypothetical protein COPCOM_03957 [Coprococcus comes ATCC 27758]
 gi|225205680|gb|EEG88034.1| hypothetical protein COPCOM_03957 [Coprococcus comes ATCC 27758]
          Length = 459

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 156/461 (33%), Positives = 239/461 (51%), Gaps = 23/461 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGL 56
           M  + +TI A+ST    S I I+RLSG   F + + I K K P      +  ++ Y + +
Sbjct: 1   MGFKTDTIAAISTAMTNSGIGIVRLSGEDAFSIIDKIYKGKSPKLLSEQKSHTIHYGYIM 60

Query: 57  DGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           DG   +D+ L+++   P S+TGED+ E   HGG+ V   ILE + K    R A PGEFS+
Sbjct: 61  DGEQTIDEVLVLLMRGPHSYTGEDTVEIDCHGGVFVTRKILETVIK-YGARPAEPGEFSK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+ISS+ +   + S+  + G + +   +  + + +  +FIE+ 
Sbjct: 120 RAFLNGRMDLSQAEAVIDIISSKNDYALQSSVNQLKGSVHNKIKEIREVILYHTAFIESA 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LD  E   V  +    +L  +  L+  I   +     G II+ G K VI+G  NAGKSSL
Sbjct: 180 LDDPEHISVDGY-GDSLLGVVKDLQQKIQCLLDTADDGRIIKEGIKTVIVGKPNAGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  ++ AIVT+I GTTRDVL  ++ L+G  + I DTAGIR+T DIVEK G+ +    
Sbjct: 239 MNVLVGEEKAIVTEIAGTTRDVLEENIQLQGVSLNIMDTAGIRDTSDIVEKIGVDKAKEN 298

Query: 296 VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTE--------EYDH 341
            E ADLI+ + +       N  + I   ++   + +  KSDL +   +        +   
Sbjct: 299 AEKADLIIYVVDASRPLDENDHEIIEMIRDKKAVILLNKSDLSTVVDKKALETLITKPMI 358

Query: 342 LISSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMASL-NEKD 399
            IS+    G+ EL + +K +  +           ++ RH   L+  +  L+      E  
Sbjct: 359 DISAKEETGIHELESTLKEMFYHGDISFNDEVYITNIRHKTALADALSSLKKVEESIENQ 418

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D    +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 419 MPEDFFTIDLMDAYESLGSITGETIGEDLVNEIFSKFCMGK 459


>gi|17544724|ref|NP_518126.1| tRNA modification GTPase TrmE [Ralstonia solanacearum GMI1000]
 gi|17427013|emb|CAD13533.1| probable trna modification gtpase trme protein [Ralstonia
           solanacearum GMI1000]
          Length = 481

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 153/460 (33%), Positives = 244/460 (53%), Gaps = 29/460 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
            I A++T      I ++R+SGP    V + +C +  P PR+A+   F   DG  +D+G+ 
Sbjct: 25  PIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRLLP-PRQATYLPFLDADGAAIDRGIA 83

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRAFENGKI 123
           + FP+P S+TGED  E   HGG  V+  +L    +      LR+A PGEF+RRAF N K+
Sbjct: 84  LWFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLRAGHGIGLRVAEPGEFTRRAFLNDKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + TE   R +   + G  S      ++++ H+R  +EA LDF E E+
Sbjct: 144 DLAQAEAVADLIEASTEAAARSAARSLDGVFSQTVHALVERVIHLRMLVEATLDFPE-EE 202

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +    + +    +  ++  +   ++Q + G ++R G  +V+ G  N GKSSL NALA  +
Sbjct: 203 IDFLEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAE 262

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT+  +  AD++L
Sbjct: 263 LAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVL 322

Query: 304 LLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTY------TEEYDHL 342
            L +               I+++     P  +  + +  K DL           +  +  
Sbjct: 323 HLLDAADYRAHGLSAEDAAIDARIAEHVPPGVPTLRVINKIDLAGAAVPGRVDAQPPEVW 382

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDC 400
           +S+  G G+E L   +  I   +         + +RHL  L     +L +A+   +++  
Sbjct: 383 LSARDGSGIELLRAALLEIAGWQ-GGGEGLYLARERHLSALRSAREHLTIAADHADQRAQ 441

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 442 SLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 481


>gi|229159044|ref|ZP_04287100.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 4342]
 gi|228624463|gb|EEK81234.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 4342]
          Length = 458

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 245/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +    I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYT---------EEYDHLIS 344
           DL+L++        N  +++    +  DFI I  K+DL              E      S
Sbjct: 301 DLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVIELAEENRVITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    +
Sbjct: 361 LIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIESGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|324329435|gb|ADY24695.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 458

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 244/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +    I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G     +    + +E ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGCLRQDILETLAHVEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLIS 344
           DL+L++        N  +++    +  DFI I  K+DL      E              S
Sbjct: 301 DLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRIITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    +
Sbjct: 361 LIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|229020710|ref|ZP_04177436.1| tRNA modification GTPase mnmE [Bacillus cereus AH1273]
 gi|229026925|ref|ZP_04183248.1| tRNA modification GTPase mnmE [Bacillus cereus AH1272]
 gi|228734383|gb|EEL85054.1| tRNA modification GTPase mnmE [Bacillus cereus AH1272]
 gi|228740586|gb|EEL90858.1| tRNA modification GTPase mnmE [Bacillus cereus AH1273]
          Length = 458

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 145/458 (31%), Positives = 245/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +  + I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAIEKVDRIFKGKDLTQVDSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQA 300

Query: 300 DLILLLKE-----INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLIS 344
           DL+L++        N  +E+    +  DFI I  K+DL      E              S
Sbjct: 301 DLVLVVVNYSEALTNEDEELFRAVQGKDFIIIVNKTDLPQEIDMERVTELAAGNRVITTS 360

Query: 345 SFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q    + +     E    +
Sbjct: 361 LIEEQGIDELEKAIADLFFEGAIDSADMTYVSNTRHIGLLTQAGTTIGDAIEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|241206940|ref|YP_002978036.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860830|gb|ACS58497.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 437

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 207/437 (47%), Positives = 293/437 (67%), Gaps = 3/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI+A+S+GALPS +S++R+SGP    +   +        R AS R     + + +D G
Sbjct: 3   NDTIYALSSGALPSGVSVVRISGPLTRDILVSLAGS-VSAARHASHRTIRSRNNQPIDSG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP+P SFTGED AE  +HG  AV+  +   L  +P +R+A  GEFSRRAFENGK+D
Sbjct: 62  LVLFFPAPNSFTGEDVAELQIHGSKAVLAALFHALGDIPGVRMAVEGEFSRRAFENGKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L+E E LADLI +ETEMQRRL++E  +G LS +Y  W ++LT  R+ IEA+LDF +E+DV
Sbjct: 122 LVEVEGLADLIGAETEMQRRLAVEHSAGGLSRIYDSWAERLTRARALIEAELDFPDEDDV 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S  V  D+  L++DI +H++    GEIIR+G+K+VI G  NAGKSSL N LA++DV
Sbjct: 182 PGSVSDMVWADMAKLRSDIENHLATASAGEIIRDGFKVVIAGAPNAGKSSLLNTLARRDV 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL +DLD++GYL+K+ DTAG+RE DD VE EG++R    + +ADL+LL
Sbjct: 242 AIVTEIAGTTRDVLQVDLDIDGYLIKLYDTAGLREADDRVEMEGVRRARAALRDADLVLL 301

Query: 305 LKEINSKK-EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           L ++ +        +    + +GTK DL     + YD  IS+ TG+GL EL   I  I+ 
Sbjct: 302 LVDMTNPLVPDELEQASPHVIVGTKKDLIGIAEDRYDLQISTTTGDGLPELRRLIGDIID 361

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            +F  L  +IPS +RH   L++ +  L+ A++++ D  L++  E LR+A+  LG+ITG V
Sbjct: 362 KRFAGLSMAIPSRQRHKDSLAKCLAALD-AAISQTDVNLELRTEQLRIAAEYLGRITGRV 420

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVEQLL +IFS+FCIGK
Sbjct: 421 DVEQLLGVIFSEFCIGK 437


>gi|190171240|gb|ACE63690.1| ThdF [Enterobacter sp. KM877_04]
          Length = 439

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 151/442 (34%), Positives = 238/442 (53%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDTDGTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILMLPGLRIAKPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNSVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIELADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG++
Sbjct: 299 TTDAVDPADIWPDFIARLPAKLPITVVRNKADVTGETLGISEVNGHSLIRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
           +L N +K  +      +     + +RHL  L    R+L+            +++AE LRL
Sbjct: 359 DLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAARHLDQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQNLSEITGEFTSDDLLGRIF 439


>gi|190171176|gb|ACE63658.1| ThdF [Citrobacter koseri]
          Length = 439

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 150/442 (33%), Positives = 238/442 (53%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG++
Sbjct: 299 TTDAVDPAEIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +      +     + +RHL  L++   +L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLQQGKSQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|190171182|gb|ACE63661.1| ThdF [Enterobacter amnigenus]
          Length = 439

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 152/442 (34%), Positives = 238/442 (53%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNTVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWHEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG+E
Sbjct: 299 TTSAVDPADIWPDFIARLPAKLPITVVRNKADMTGETLGLSDVNGHSLIRLSARTGEGIE 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
           +L N +K  +  +   +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 DLRNHLKQSMGFE-TNMEGGFLARRRHLQALEAAANHLDQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  SL +ITG    + LL  IF
Sbjct: 418 AQQSLSEITGEFTSDDLLGRIF 439


>gi|254560700|ref|YP_003067795.1| tRNA modification GTPase trmE [Methylobacterium extorquens DM4]
 gi|254267978|emb|CAX23846.1| tRNA modification GTPase trmE [Methylobacterium extorquens DM4]
          Length = 444

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 171/442 (38%), Positives = 260/442 (58%), Gaps = 4/442 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59
           +    +TIFA ++G   +A++++R+SGP+     + +   + P PR+ SLR     D R 
Sbjct: 5   LPDRDDTIFAPASGFGRAAVTVVRISGPAAGLALDRLAGGR-PEPRRLSLRRLRDPDSRD 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ILD+ L+   P P + TGED AE H+HGG+AV + +L  LA +P  R A  G FSRRAF 
Sbjct: 64  ILDQALVAWLPGPATATGEDMAELHLHGGLAVRSAVLRALAGVPGCRPAEAGAFSRRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL EAE +ADLI +ETE QR  ++  + G L      W +    + +  EA LDF+
Sbjct: 124 NGRIDLTEAEGIADLIDAETEAQRVQALRQLDGALGRQVAAWRETGIDLLAGAEAALDFA 183

Query: 180 EEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E DV        L+     L++ I + ++ G+ GE +R G+ +V+ G  NAGKS+L NA
Sbjct: 184 DEGDVDEDGLDAALSGRATALRDAIRAALADGRRGERLREGFCVVLAGAPNAGKSTLLNA 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L+ +D AIV+DIPGTTRD + +  DL G  V + DTAG+RET D +E EG+KRT   + +
Sbjct: 244 LSGRDAAIVSDIPGTTRDAIEVRCDLGGLPVVLVDTAGLRETADAIEAEGVKRTQSRIRS 303

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           ADL+L L     K +     +I  + + TK+DL      E    IS+ TG GL+ L++ I
Sbjct: 304 ADLVLHLVPAGGKADAELFTDISILLVRTKTDLAPEVPGEGGLAISAVTGAGLDALLDAI 363

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           ++       +   ++ + +RH   LS+   +L+  +        +++AE+LRLA  +LG+
Sbjct: 364 QAAAQTALGQGD-ALVTRERHREALSRAAAHLDRVATASAGFPPELVAEDLRLAVRALGE 422

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           + G V VE++LD +F+ FCIGK
Sbjct: 423 VGGHVGVEEMLDRLFAGFCIGK 444


>gi|222150246|ref|YP_002551203.1| tRNA modification GTPase TrmE [Agrobacterium vitis S4]
 gi|221737228|gb|ACM38191.1| tRNA modification GTPase TrmE [Agrobacterium vitis S4]
          Length = 436

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 207/436 (47%), Positives = 290/436 (66%), Gaps = 4/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+STG+LPS +++IRLSGP    V   +C    P PR+A+LR     DG ++D+GL
Sbjct: 4   DTIFALSTGSLPSGVAVIRLSGPDVQAVLTELCGM-VPAPRQATLRSIRHRDGLVIDRGL 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED  E HVHG  AVV+ +L  LA     RLA PGEFSRRAFENGK+DL
Sbjct: 63  VLFFSGPSSFTGEDCGELHVHGSRAVVSVLLSTLASFSGCRLAEPGEFSRRAFENGKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E LADL+++ETEMQRR ++   SG  + +Y  W +KL + R+ IEA+LDF++E D+ 
Sbjct: 123 VEIEGLADLLAAETEMQRRQALAQASGHATGIYESWREKLIYGRAMIEAELDFADEGDIP 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S +V + +  L+  IS+ I   + GEIIR+G+ +VI G  NAGKSSL NALA +DVA
Sbjct: 183 GSVSDQVWDTVTDLRTQISAAIVDDRRGEIIRDGFNVVIAGPPNAGKSSLINALAGRDVA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT   GTTRD+L  D+DLEGY+V++ DTAGIRET++++E+EGI+R   +VE ADL+LLL
Sbjct: 243 IVTHYAGTTRDILQCDIDLEGYVVRLYDTAGIRETEEVIEQEGIRRALRKVEEADLVLLL 302

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIKSILSN 364
            +++S        ++ FI IGTK DL S   E   D +IS++  + ++ + + I   +  
Sbjct: 303 DDVSSPGHTINIVSVPFITIGTKLDLVSASDEIGRDLVISTYVADDVDRVRSVILDSIRK 362

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +F +    IPS  RH+  L   V +++ A   +    L+I A+ LRLAS SLG++ G +D
Sbjct: 363 RFSQNESVIPSRLRHIECLRNAVSFIDQAL--DGRLSLEIRADFLRLASDSLGRLVGRID 420

Query: 425 VEQLLDIIFSKFCIGK 440
            E LL  IFS+FC+GK
Sbjct: 421 TETLLGKIFSEFCVGK 436


>gi|220933188|ref|YP_002510096.1| tRNA modification GTPase TrmE [Halothermothrix orenii H 168]
 gi|219994498|gb|ACL71101.1| tRNA modification GTPase TrmE [Halothermothrix orenii H 168]
          Length = 463

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 150/461 (32%), Positives = 245/461 (53%), Gaps = 26/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL----- 56
             +TI A+ST    + I  IR+SG     V + I K  K K      +    +G      
Sbjct: 5   TDDTIAAISTPFGTAGIGKIRVSGSGAIDVADRIFKGVKDKSLKNVNTYTAHYGYVVEPE 64

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G+++D+ ++IV   P SFTGED  EF  HGG+  +  +LE L      RLA PGEFS+R
Sbjct: 65  SGKMVDEVIVIVMRGPHSFTGEDVVEFDCHGGMIPLKKVLEVLL-NNGARLAEPGEFSKR 123

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE + ++I+S+T+    +++  ++G+LS+      +++  + + +EA +
Sbjct: 124 AFLNGRIDLAQAEGIMEVINSKTDKGLDVAINHLTGKLSNKITGIKNEVIRLLAHLEAAI 183

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF E+E ++ F   E+ N I  +K++I   ++    G+I + G K VI+G  N GKSSL 
Sbjct: 184 DFPEDE-IEGFEPDELGNRINGIKDEIEDLLATSDQGKIYQEGLKAVIVGKPNVGKSSLL 242

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +++ AIVTDIPGTTRD++   +++ G  ++I DTAGIRET D+VEK G+++T   +
Sbjct: 243 NSLVQENRAIVTDIPGTTRDIIEEYINIRGIPLRIIDTAGIRETRDMVEKIGVEKTRNSL 302

Query: 297 ENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH--------- 341
             ADL+L + ++         K     K+   I +  K+DL     E+            
Sbjct: 303 READLVLFMLDVAQGLTEEDIKIYDMVKDKPMIVLVNKTDLDREIDEKKIKDHFKEHPLL 362

Query: 342 LISSFTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KD 399
            IS     GL+ L    I+ ++S +         +  RH   + + V  +     +  + 
Sbjct: 363 WISVKEEIGLDNLKEAIIEEVVSEEVNVSDNIFITRVRHKDAMKKAVHSINRVKESLNQG 422

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D +  +L+    +LG+ITG    E ++D IF+ FC+GK
Sbjct: 423 LPYDFLTIDLKDCLDALGEITGETVTEDIIDRIFADFCLGK 463


>gi|85060406|ref|YP_456108.1| tRNA modification GTPase TrmE [Sodalis glossinidius str.
           'morsitans']
 gi|123518608|sp|Q2NQ72|MNME_SODGM RecName: Full=tRNA modification GTPase mnmE
 gi|84780926|dbj|BAE75703.1| thiophene and furan oxidation protein [Sodalis glossinidius str.
           'morsitans']
          Length = 454

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 156/456 (34%), Positives = 241/456 (52%), Gaps = 21/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A++T     ++ I+R+SGP    V   +   K P PR+A    F   DG  LD
Sbjct: 2   SQTDTITALATPPGRGSVGILRVSGPLAAPVARALLG-KLPRPRQAEYLPFRDDDGTTLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +G+ + FP P SFTGED  E   HGG  +++ +L+ +  MP +R+A PGEFS RAF N K
Sbjct: 61  QGIALFFPGPHSFTGEDVLELQGHGGPVILDLLLQRIVAMPGVRIARPGEFSERAFLNDK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI + +    R ++  + G  S    + +  LT++R ++EA +DF + E
Sbjct: 121 LDLAQAEAIADLIDASSAQAARSAINSLQGAFSGRIHELVKALTNLRIYVEAAIDFPD-E 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   S  ++   +  +   +    ++ + G ++R G K+VI G  NAGKSSL NALA +
Sbjct: 180 EIDFLSEGKIEASLNDVIARLERVRTEARQGSLLREGMKVVIAGKPNAGKSSLLNALAGR 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT I GTTRDVL   + L+G  + I DTAG+R   D VE+ GI+R + E+E AD +
Sbjct: 240 EAAIVTAIAGTTRDVLREHIHLDGMPLHIIDTAGLRNAGDEVERIGIERAWREIEQADHV 299

Query: 303 LLLKEINSKK-----------EISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           LL+ +  +                 P  +    +  K+DL       S  +      +S+
Sbjct: 300 LLMVDGAATPLSDPDMLWPAFIARLPSGMPVTVVRNKADLTGESVAISDISGYLLITLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDI 404
            +G G++ L   +K  +          +   +RHL  L     +L+         C  ++
Sbjct: 360 QSGVGMDLLRTHLKQSMGFTGGTEGGFLA-RRRHLDALETAATHLQQGKEQLVSACYGEL 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 419 LAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454


>gi|170694075|ref|ZP_02885231.1| tRNA modification GTPase TrmE [Burkholderia graminis C4D1M]
 gi|170141147|gb|EDT09319.1| tRNA modification GTPase TrmE [Burkholderia graminis C4D1M]
          Length = 464

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 152/465 (32%), Positives = 241/465 (51%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G +  Q        +   PR AS   F   
Sbjct: 2   LTTDSDPIVAIATAPGRGGIGVVRISFGRAGDAAAQPLMQALTGQALAPRHASYVPFLDD 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
           +G  LD+G+ + FP+P S+TGE   E   HGG  V+   L+      +   LRLA PGEF
Sbjct: 62  NGNPLDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLALQRCIDAGRAFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++++  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEEVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  ++S +++ + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPE-EEIDFLEAADARGKLARIRERLASVLAEARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R+T+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLY---------STYTE 337
            E+E AD++L L +        +      FP  +  + +  K+DL              E
Sbjct: 301 SEIERADVVLHLLDARTGMTAEDETIAKRFPSGVPVVRVLNKTDLVGLPPHTRALDADLE 360

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
             +  +S+  G+G+  L +++  I   +         + +RHL  L     +L  A+ + 
Sbjct: 361 LSEVRLSAKQGDGVSLLRDELLRIAGWQAG-AESVYLARERHLIALRAAQEHLATAAAHA 419

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464


>gi|209519685|ref|ZP_03268474.1| tRNA modification GTPase TrmE [Burkholderia sp. H160]
 gi|209499902|gb|EDZ99968.1| tRNA modification GTPase TrmE [Burkholderia sp. H160]
          Length = 464

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 153/465 (32%), Positives = 242/465 (52%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G +  Q        +   PR AS   F   
Sbjct: 2   LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTAQTLAPRHASYVPFLDA 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGEF
Sbjct: 62  SGNPLDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++++  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEEVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  ++  +S+ + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPE-EEIDFLEAADARGKLTRIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+RET+D VEK GI+RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRETEDEVEKIGIERTW 300

Query: 294 LEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDL---------YSTYTE 337
            E+E AD++L L +  +            FP+ +  + +  K+DL              E
Sbjct: 301 GEIERADVVLHLLDARAGMTADDETIAGRFPRGVPVVRVLNKTDLTGLAPATQALDADLE 360

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
             +  +S+  G+G+  L +++  I   +         + +RHL  L     +L  A+ + 
Sbjct: 361 LSEVRLSAKKGDGVALLRDELLRIAGWQAG-AESVYLARERHLIALRAADEHLATAAAHA 419

Query: 398 KD--CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +     LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 EQNAQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464


>gi|205371771|sp|Q8Y3H5|MNME_RALSO RecName: Full=tRNA modification GTPase mnmE
          Length = 474

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 153/460 (33%), Positives = 244/460 (53%), Gaps = 29/460 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
            I A++T      I ++R+SGP    V + +C +  P PR+A+   F   DG  +D+G+ 
Sbjct: 18  PIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRLLP-PRQATYLPFLDADGAAIDRGIA 76

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRAFENGKI 123
           + FP+P S+TGED  E   HGG  V+  +L    +      LR+A PGEF+RRAF N K+
Sbjct: 77  LWFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLRAGHGIGLRVAEPGEFTRRAFLNDKL 136

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + TE   R +   + G  S      ++++ H+R  +EA LDF E E+
Sbjct: 137 DLAQAEAVADLIEASTEAAARSAARSLDGVFSQTVHALVERVIHLRMLVEATLDFPE-EE 195

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +    + +    +  ++  +   ++Q + G ++R G  +V+ G  N GKSSL NALA  +
Sbjct: 196 IDFLEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAE 255

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT+  +  AD++L
Sbjct: 256 LAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVL 315

Query: 304 LLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTY------TEEYDHL 342
            L +               I+++     P  +  + +  K DL           +  +  
Sbjct: 316 HLLDAADYRAHGLSAEDAAIDARIAEHVPPGVPTLRVINKIDLAGAAVPGRVDAQPPEVW 375

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDC 400
           +S+  G G+E L   +  I   +         + +RHL  L     +L +A+   +++  
Sbjct: 376 LSARDGSGIELLRAALLEIAGWQ-GGGEGLYLARERHLSALRSAREHLTIAADHADQRAQ 434

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 435 SLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 474


>gi|293602680|ref|ZP_06685121.1| tRNA modification GTPase TrmE [Achromobacter piechaudii ATCC 43553]
 gi|292818871|gb|EFF77911.1| tRNA modification GTPase TrmE [Achromobacter piechaudii ATCC 43553]
          Length = 450

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/439 (37%), Positives = 236/439 (53%), Gaps = 17/439 (3%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESF 75
               I ++R+SG    ++   + ++    PR A    F   DG +LD+G+ I F +P S+
Sbjct: 15  GRGGIGVVRVSGADLSELVRRLFQR-DLTPRHAHYLPFKTSDGELLDEGIAIYFRAPHSY 73

Query: 76  TGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
           TGED  E   HGG AV+  +LE      +   +RLA PGEF+RRAF N ++DL +AE++A
Sbjct: 74  TGEDVLELQGHGGPAVLRRVLESCVAAGRDLGVRLAEPGEFTRRAFLNDRMDLAQAEAVA 133

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +    R +M  +SGE S+   +  D++ H+R  +EA LDF E E++      + 
Sbjct: 134 DLIDASSVAAARGAMASLSGEFSARVNELSDRIIHLRMLVEATLDFPE-EEIDFLEKYQA 192

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  L  D+S  I+Q + G I+R G  +V+ G  N GKSSL NALA  D+AIVT I G
Sbjct: 193 RPTLDALTADLSKLIAQARQGVILREGLHVVLAGQPNVGKSSLLNALAGDDIAIVTPIAG 252

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRD +  ++ ++G  + I DTAG+RET+D VE  GI RT+ E+E AD+IL L++     
Sbjct: 253 TTRDKVVQEIHIDGVPLHIVDTAGLRETEDTVESIGIARTWQEIERADVILHLQDATQPG 312

Query: 313 E-------ISFPKNIDFIFIGTKSDLYST--YTEEYDHLISSFTGEGLEELINKIKSILS 363
           +          P     + +  K DL ST     E +  IS+  G GL+ L   +  I  
Sbjct: 313 DELDAQITARLPPRTPVLKVFNKVDLLSTAFAPGEGELGISAKRGAGLDALRAALLHIA- 371

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITG 421
                      + +RHL+ L Q   +L +A  +       LD+ AE LRLA  SL  ITG
Sbjct: 372 GWNPGAESPWLARERHLHALQQAAEHLALAGEHAGQDDRVLDLFAEELRLAHESLSSITG 431

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               + LL  IFS FCIGK
Sbjct: 432 KFTSDDLLGEIFSSFCIGK 450


>gi|190171170|gb|ACE63655.1| ThdF [Citrobacter sp. NZ3872_90]
          Length = 439

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 150/442 (33%), Positives = 239/442 (54%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKASEVAETVLG-KLPKPRYADYLPFKDEDGSALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNSVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG++
Sbjct: 299 TTDAVDPADIWPDFIARLPAKLPITVVRNKADITGETLGLSEVNGHSLVRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +  +   +     + +RHL  L++   +L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFE-TNMEGGFLARRRHLQALAEAAEHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQNLSEITGEFTSDDLLGRIF 439


>gi|295697832|ref|YP_003591070.1| tRNA modification GTPase TrmE [Bacillus tusciae DSM 2912]
 gi|295413434|gb|ADG07926.1| tRNA modification GTPase TrmE [Bacillus tusciae DSM 2912]
          Length = 461

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 155/458 (33%), Positives = 253/458 (55%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
           ++ I AV T    + I++IR+SGP C +V E I + ++      S R  +G         
Sbjct: 6   EDVIAAVGTAPGEAGIAVIRVSGPGCARVVERIFRGRQSLQDAPSHRMVYGAVVDPDTAE 65

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ L +   +P S+TGED  E H HGG AVV  +L  + +    R A PGEF++RAF 
Sbjct: 66  VLDEVLAVRMQAPRSYTGEDVVEIHTHGGSAVVGRVLNAVVRA-GARPAEPGEFTKRAFL 124

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++ DLI S+T+  RRL++E + G LS+   Q  + L  + + IE  +D+ 
Sbjct: 125 NGRLDLSQAEAVIDLIRSKTDAARRLALEQLKGGLSTRVKQMREILLDVMAQIEVTIDYP 184

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  DV++ + +++   +  ++  I   ++  ++G ++R G +  I+G  N GKSSL NAL
Sbjct: 185 EH-DVEDVTIEQIREAVDQVREQIDELLASSRVGRLVREGVRTAIVGRPNVGKSSLLNAL 243

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A ++ AIVT IPGTTRDV+   + + G   +I DTAGIR T+D VE+ G++R+   V  A
Sbjct: 244 AGRERAIVTAIPGTTRDVVDEWIHVRGVAFQILDTAGIRTTEDEVERIGVERSLKWVAEA 303

Query: 300 DLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL---------YSTYTEEYDHLIS 344
           DL+L + + +S  E      +   K+  F+ +  K DL              +     +S
Sbjct: 304 DLVLCVLDGSSPLEKEDLELLDRIKDRPFLVVVNKIDLPGRLAGDGRLEKLPQHRMVRVS 363

Query: 345 SFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGL 402
           + TG+G++EL +++   +L  +       + ++ RH+  L +    L+ A     +   +
Sbjct: 364 ARTGDGVQELADRMAQVVLKGEGVSASSCMVTNVRHMALLEEAREDLDAAERAVSEGWTV 423

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+ A +LR A   LG I G    E+LL+ IFS+FC+GK
Sbjct: 424 DVAAVDLRAAWEHLGDILGERAGEELLNRIFSQFCLGK 461


>gi|190171254|gb|ACE63697.1| ThdF [Leclercia adecarboxylata]
          Length = 439

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 151/442 (34%), Positives = 240/442 (54%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +       + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQAHPPGRGGVGILRISGQKAREVAEAVLG-KLPKPRYADYLPFKDTDGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  + ND+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNAVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P N+    +  K+D+       S         +S+ TGEG++
Sbjct: 299 TTAAVDPAAIWPDFIARLPANLPITVVRNKADVTGETLGLSDVNGHSLIRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
           EL + +K  +      +     + +RHL  L +  ++L+            +++AE LRL
Sbjct: 359 ELRDHLKQSMGFD-TSMEGGFLARRRHLQALEEAAQHLDQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|310644871|ref|YP_003949630.1| tRNA modification gtpase mnme [Paenibacillus polymyxa SC2]
 gi|309249822|gb|ADO59389.1| tRNA modification GTPase mnmE [Paenibacillus polymyxa SC2]
          Length = 458

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 145/458 (31%), Positives = 239/458 (52%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
            +TI A++T      I+++R+SGP      E + + K P  +  +    +G         
Sbjct: 3   SDTIAAIATAVGEGGIAVVRVSGPEAVTEVEALFRSKTPLSKVPTHTVHYGHIIDPQSQE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +++ L+ V  +P SFT ED  E   HGG+  V  +++ L     +RLA PGEF++RAF 
Sbjct: 63  KVEEVLVTVMRAPRSFTTEDVVEISTHGGVVAVKRVMDLLLLQN-IRLAEPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE + DLI S+++    ++++ + G+LS    +    L    + IE ++D+ 
Sbjct: 122 NGRIDLSQAEGVIDLIRSKSDKAFSMALKQVDGQLSQNIRRLRHVLVETLAHIEVNIDYP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  DV++F+S+ + +    +  +I   +   + G+I+R G    I+G  N GKSSL N L
Sbjct: 182 EH-DVESFTSELIKDKSSQVMAEIDRLLHTAEQGKILREGLTTAIVGRPNVGKSSLLNTL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A+ + AIVTDIPGTTRDV+   + +    +K+ DTAGIRET D+VE+ G++R+   V  A
Sbjct: 241 AQGERAIVTDIPGTTRDVIEEYVTINNIPLKLLDTAGIRETMDVVERIGVERSRTAVSEA 300

Query: 300 DLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTY---------TEEYDHLIS 344
           DL+L++   N          +   +    I I  K DL +            EE    +S
Sbjct: 301 DLLLIVINANEPLHEDEMALMEQIRGRQAIVIMNKMDLPAQIDRDLLLRYVPEELIVPMS 360

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               EG + L   I ++    K +    +  S+ RH+  L +  + L +     ++   +
Sbjct: 361 VKENEGADRLEQAISNLFFSGKLESADMTYVSNVRHIALLKKARQSLVDAYEAADQLVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+I  ++RLA   LG+I G    + L+D IFS+FC+GK
Sbjct: 421 DMIQIDVRLAWEQLGEIVGDTAHDALIDQIFSQFCLGK 458


>gi|325912241|ref|ZP_08174638.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 143-D]
 gi|325475900|gb|EGC79069.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 143-D]
          Length = 461

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 146/456 (32%), Positives = 248/456 (54%), Gaps = 24/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ D+I ++T+  R+++M+ + G L     +   +L +  +  E ++D+ E
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHEEVNIDYPE 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL N L+
Sbjct: 187 Y-DMDDVTSKEMYDKAHQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLLNYLS 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIVT I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +  +D
Sbjct: 246 KEEKAIVTSIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAITESD 305

Query: 301 LILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISSF 346
           L+LLL   + +      K +   ++   I I  K+D  +  T++            IS  
Sbjct: 306 LVLLLINSSEELTEEDQKLLELTQDKKRIIILNKADQVAKITKKDIQKITDSPIVTISVL 365

Query: 347 TGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404
             + +  L   IKS+            + +++R    L +  + L E       +  LD+
Sbjct: 366 KKQNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQNDLLRKAKQSLIEAIEAINDNMPLDL 425

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 426 VQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461


>gi|190171334|gb|ACE63737.1| ThdF [Cronobacter sakazakii]
          Length = 440

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 148/443 (33%), Positives = 232/443 (52%), Gaps = 21/443 (4%)

Query: 9   FAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIV 68
            A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + 
Sbjct: 1   VAQATPPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALW 59

Query: 69  FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEA 128
           FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +A
Sbjct: 60  FPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQA 119

Query: 129 ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS 188
           E++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S
Sbjct: 120 EAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLS 178

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
             ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVT
Sbjct: 179 DGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVT 238

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           DI GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + + 
Sbjct: 239 DIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 298

Query: 309 NSKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGL 351
            +                 P  +    +  K+D+       S         +S+ T EG+
Sbjct: 299 TTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGV 358

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLR 410
           + L N +K  +      +     + +RHL  L     +L+            +++AE LR
Sbjct: 359 DVLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAGELLAEELR 417

Query: 411 LASVSLGKITGCVDVEQLLDIIF 433
           LA  +L +ITG    + LL  IF
Sbjct: 418 LAQQALSEITGEFTSDDLLGRIF 440


>gi|308071639|ref|YP_003873244.1| tRNA modification GTPase trmE [Paenibacillus polymyxa E681]
 gi|305860918|gb|ADM72706.1| Probable tRNA modification GTPase trmE [Paenibacillus polymyxa
           E681]
          Length = 458

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 145/458 (31%), Positives = 238/458 (51%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
            +TI A++T      I+++R+SGP      E + + K P  +  +    +G         
Sbjct: 3   SDTIAAIATAVGEGGIAVVRISGPEAVTEVEALFRSKTPLSKAPTHTVHYGHIIDPQSQE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +++ L+ V  +P SFT ED  E   HGG+  V  +++ L     +RLA PGEF++RAF 
Sbjct: 63  KVEEVLVTVMRAPRSFTTEDVVEISTHGGVVAVKRVMDLLLLQN-IRLAEPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE + DLI S+++    ++++ + G+LS    +    L    + IE ++D+ 
Sbjct: 122 NGRIDLSQAEGVIDLIRSKSDKAFSVALKQVDGQLSQNIRRLRHVLVETLAHIEVNIDYP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  DV++F+S  + +    +  +I   +   + G+I+R G    I+G  N GKSSL N L
Sbjct: 182 EH-DVESFTSDLIKDKSSQVMTEIDRLLHTAEQGKILREGLTTAIVGRPNVGKSSLLNTL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A+ + AIVTDIPGTTRDV+   + +    +K+ DTAGIRET D+VE+ G++R+   V  A
Sbjct: 241 AQGERAIVTDIPGTTRDVIEEYVTINSIPLKLLDTAGIRETMDVVERIGVERSRTAVSEA 300

Query: 300 DLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYST---------YTEEYDHLIS 344
           DL+L++   N          +   +    I I  K DL +            EE    +S
Sbjct: 301 DLLLIVINANEPLHEDEMALMEQIRGRQAIVIMNKMDLPAQVDRDLLLRYVPEELIVPMS 360

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               EG + L   I ++    K +    +  S+ RH+  L +  + L +     ++   +
Sbjct: 361 VKENEGADRLEQAISNLFFSGKLESADMTYVSNVRHIALLKKARQSLVDAYEAADQFVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+I  ++RLA   LG+I G    + L+D IFS+FC+GK
Sbjct: 421 DMIQIDVRLAWEHLGEIVGDTAHDALIDQIFSQFCLGK 458


>gi|188580912|ref|YP_001924357.1| tRNA modification GTPase TrmE [Methylobacterium populi BJ001]
 gi|205415780|sp|B1ZGG9|MNME_METPB RecName: Full=tRNA modification GTPase mnmE
 gi|179344410|gb|ACB79822.1| tRNA modification GTPase TrmE [Methylobacterium populi BJ001]
          Length = 444

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/437 (37%), Positives = 256/437 (58%), Gaps = 2/437 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +ETIFA ++G   +A++++R+SGP+     + +   +    R +  R      G ILD+ 
Sbjct: 9   EETIFAPASGFGRAAVAVVRVSGPAAGPALDQLAGGRPEPRRLSLRRLRDPGTGNILDQA 68

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+   P P + TGED AE H+HGG+AV   +L  L ++P  R A  G FSRRAF NG+ID
Sbjct: 69  LVAWLPGPATATGEDMAELHLHGGLAVRAAVLRALGRVPGCRPAEAGAFSRRAFLNGRID 128

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE +ADLI +ETE QR  ++  + G L      W +    + +  EA LDF++E DV
Sbjct: 129 LTEAEGIADLIDAETEAQRVQALRQLDGALGRQVAAWRETGIELLAGAEAALDFADEGDV 188

Query: 185 -QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
            ++     +      L++ I + ++ G+ GE +R G+ +V+ G  NAGKS+L NAL+ +D
Sbjct: 189 DEDGLDAALAGRAAALRDAIRAALADGRRGERLREGFCVVLAGAPNAGKSTLLNALSGRD 248

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV+DIPGTTRD + +  DL G  V + DTAG+RET D++E EG++RT   + +ADL+L
Sbjct: 249 AAIVSDIPGTTRDAIEVRCDLGGLPVVLVDTAGLRETADVIEAEGVRRTHHRIRSADLVL 308

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
            L   + +        +  + + TKSDL S    E    +S+ TG GL+ L++ I+   +
Sbjct: 309 HLVPADGEAGPEDFAEVPVLRVRTKSDLPSGAPGEGGLAVSAVTGAGLDALLDAIQGSAA 368

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
           +       ++ + +RH   LS+   +L+  +        +++AE+LRLA  +LG++ G V
Sbjct: 369 SALGGGD-ALVTRERHREALSRAAGHLDRVATAPAGFPPELVAEDLRLAVRALGEVGGHV 427

Query: 424 DVEQLLDIIFSKFCIGK 440
            VE++LD +F+ FCIGK
Sbjct: 428 GVEEMLDRLFAGFCIGK 444


>gi|77968732|gb|ABB10112.1| tRNA modification GTPase trmE [Burkholderia sp. 383]
          Length = 489

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 154/466 (33%), Positives = 243/466 (52%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  +K  PR AS   F  
Sbjct: 27  LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCG-QKLAPRHASYVPFLD 85

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 86  EHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGE 145

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +
Sbjct: 146 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLV 205

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 206 EATLDFPE-EEIDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGK 264

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT
Sbjct: 265 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIART 324

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +        +      FP  +  + +  K+DL          +   
Sbjct: 325 WSEIERADVVLHLLDSRNGMTADDETIAARFPGGVPVVRVLNKTDLTGVAACVEHPAAEG 384

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
           +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+  
Sbjct: 385 DLTEVHLSAKRGDGIDMLRAELLRIAGWQAG-AEGVYLARERHLIALRAAQEHLAQAADH 443

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 444 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 489


>gi|256751460|ref|ZP_05492338.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749679|gb|EEU62705.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 462

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/464 (34%), Positives = 244/464 (52%), Gaps = 26/464 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGL 56
           M    +TI A+ST    + I I+RLSG    ++   I K  K       +  +L Y + +
Sbjct: 1   MKMVFDTIAAISTFPGEAGIGIVRLSGDDALEIISKIFKPYKSKDIKKVKSHTLHYGYIV 60

Query: 57  DGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           D     + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF
Sbjct: 61  DPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLK-QGARLAEPGEF 119

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG+IDL +AE++ D+I ++T +  R + + + G + S   +  DK+  +   + 
Sbjct: 120 TKRAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLLVHLL 179

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF E EDV+    KE+L     +  DI   I+  + G IIR G K  I+G  N GKS
Sbjct: 180 ALIDFPE-EDVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKS 238

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++ 
Sbjct: 239 SLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVTKSK 298

Query: 294 LEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--------- 338
             +  ADLIL + + + +      +        + IF+  K DL     E+         
Sbjct: 299 EVLAEADLILFVLDASRELTKEDYEIFDILTGKNIIFVLNKIDLPKKIDEKELKDLTKDG 358

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEM-ASLN 396
               +S+    GLEEL N I +++      L    I  + RH   L    +Y+E      
Sbjct: 359 IIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALINAKKYMESCVEAI 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E     D+I  +L  A   LGKITG    E L++ IF +FC+GK
Sbjct: 419 EGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 462


>gi|167759571|ref|ZP_02431698.1| hypothetical protein CLOSCI_01928 [Clostridium scindens ATCC 35704]
 gi|167662798|gb|EDS06928.1| hypothetical protein CLOSCI_01928 [Clostridium scindens ATCC 35704]
          Length = 471

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/473 (33%), Positives = 249/473 (52%), Gaps = 35/473 (7%)

Query: 1   MNHEKET-IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFG 55
           MN+  +T I A+ST    + I I+R+SG   F + + + K KK       +  ++ Y + 
Sbjct: 1   MNNHYDTTIAAISTAMSNAGIGIVRMSGCDAFDIADRVYKGKKNKKLSQQQSHTIHYGYI 60

Query: 56  LD-GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            D G+ +D+ L+++  SP S+TGED+ E + HGG+ +V  ILE L +    R A PGEF+
Sbjct: 61  TDRGKEIDEVLVMIMRSPHSYTGEDTIEINCHGGVYIVKKILELLIE-NGARPAQPGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ DLI S+ E   + S+  + G + +       ++ +  +FIE 
Sbjct: 120 KRAFLNGRLDLSQAEAVGDLIVSQNEYALQSSINQLKGSIKNKINNIRKEIIYHTAFIET 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LD  E   V  +  +E+ + +  L+NDI   +     G +I+ G + VILG  NAGKSS
Sbjct: 180 ALDDPEHISVDEY-GEELESVVRKLRNDIEKLLRTCDDGRLIKEGIQTVILGKPNAGKSS 238

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIVT+I GTTRDVL   ++L+G  + I DTAGIR+T D+VEK G+++   
Sbjct: 239 LLNVLLGQDKAIVTEIAGTTRDVLEEHINLQGISLNIMDTAGIRDTKDVVEKIGVEKAKS 298

Query: 295 EVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE---------- 338
             + ADLI+ + + +++ +      +S  K    I +  KSDL    T+E          
Sbjct: 299 HADKADLIIYVIDASTELDENDYEILSLIKGKPSIILLNKSDLDMIVTKEKVQEAYFASN 358

Query: 339 ---------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVR 388
                        IS+   +G++EL  K+K +           I  ++ RH   L     
Sbjct: 359 PAKKSGEPIPIIEISAKNKQGIDELEEKLKDMFFEGNLSFNDEIYITNIRHKTALQDAYN 418

Query: 389 YLEMASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LE  +   +     D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 419 ALERVTESIDAGMPEDFYSIDLMDAYESLGSITGETIGEDLVNEIFSKFCMGK 471


>gi|309804827|ref|ZP_07698889.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 09V1-c]
 gi|309809783|ref|ZP_07703637.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 2503V10-D]
 gi|308165766|gb|EFO67987.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 09V1-c]
 gi|308169962|gb|EFO72001.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 2503V10-D]
          Length = 461

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 146/456 (32%), Positives = 248/456 (54%), Gaps = 24/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L  V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLATVMLAPKTFTRENTVEVSCHGGLLVTEKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ D+I ++T+  R+++M+ + G L     +   +L +  +  E ++D+ E
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHEEVNIDYPE 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL N L+
Sbjct: 187 Y-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLLNYLS 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIVT+I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +  +D
Sbjct: 246 KEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAITESD 305

Query: 301 LILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISSF 346
           L+LLL   + +      K +   ++   I I  K+D  +  T++            IS  
Sbjct: 306 LVLLLINSSEELTEEDQKLLKLTQDKKRIVILNKADQVAKITKKDIQKITDSPIVTISVL 365

Query: 347 TGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404
             + +  L   IKS+            + +++R    L +  + L E       +  LD+
Sbjct: 366 KKQNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQNDLLRKAKQSLIEAIEAINDNMPLDL 425

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 426 VQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461


>gi|190171186|gb|ACE63663.1| ThdF [Enterobacter asburiae]
          Length = 439

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 151/442 (34%), Positives = 238/442 (53%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPRGRGGVGILRISGLKAREVAEAVLG-KLPKPRYADYLPFKDTDGTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  + ND+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNQVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG++
Sbjct: 299 TTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
           +L N +K  +      +     + +RHL  L +   +L             +++AE LRL
Sbjct: 359 DLRNHLKQSMGFD-TSMEGGFLARRRHLQALEEAANHLVQGKAQLIGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQNLSEITGEFTSDDLLGRIF 439


>gi|229176160|ref|ZP_04303652.1| tRNA modification GTPase mnmE [Bacillus cereus MM3]
 gi|228607319|gb|EEK64649.1| tRNA modification GTPase mnmE [Bacillus cereus MM3]
          Length = 458

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 143/458 (31%), Positives = 243/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLD---GR 59
           E +TI A+ST     AI+I+R+SG    +    I K K        ++ Y   +D    +
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSHTIHYGHIVDLDTNQ 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF 
Sbjct: 62  VIEEVMVSILRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    +++  M G LS L G+    +    + +E ++D+ 
Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  +   ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+L
Sbjct: 181 EYDDVEEMTHNILIEKATHVRTEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  A
Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQA 300

Query: 300 DLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHLIS 344
           DL+L++   +       +      +  DFI I  K+DL      E              S
Sbjct: 301 DLVLVVVNYSEALTHEDEDLFRAVQGKDFIVIVNKTDLSQVIDMERVTELAAGNRIITTS 360

Query: 345 SFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402
               +G++EL   I  +           +  S+ RH+  L+Q  + + +     E    +
Sbjct: 361 LIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVPI 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +L      LG+ITG    E L+D +FS+FC+GK
Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458


>gi|312873279|ref|ZP_07733334.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2052A-d]
 gi|311091159|gb|EFQ49548.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2052A-d]
          Length = 461

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 145/456 (31%), Positives = 249/456 (54%), Gaps = 24/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTEKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ D+I ++T+  R+++++ + G L     +   +L +  +  E ++D+ E
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAIKQLEGGLLFEIRKLRQELLNTMAHEEVNIDYPE 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL N L+
Sbjct: 187 Y-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLLNYLS 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIVT+I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +  +D
Sbjct: 246 KEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAITESD 305

Query: 301 LILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISSF 346
           L+LLL   + +      K +   ++   I I  K+D  +  T++            IS  
Sbjct: 306 LVLLLINSSEELTEEDQKLLELTQDKKRIIILNKADQVAKITKKDIQKITDSPIVTISVL 365

Query: 347 TGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404
             + +  L   IKS+            + +++R    L +  + L E       +  LD+
Sbjct: 366 KKQNMTGLEEAIKSLFLQGIADSKSEVMVTNQRQNDLLRKAKQSLIEAIEAINDNMPLDL 425

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +L+ A  SLG+ITG    ++L+  +FSKFC+GK
Sbjct: 426 VQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461


>gi|187925952|ref|YP_001897594.1| tRNA modification GTPase TrmE [Burkholderia phytofirmans PsJN]
 gi|187717146|gb|ACD18370.1| tRNA modification GTPase TrmE [Burkholderia phytofirmans PsJN]
          Length = 464

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 152/465 (32%), Positives = 241/465 (51%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G +  Q        +   PR AS   F  +
Sbjct: 2   LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTGQTLAPRHASYVPFLDV 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGEF
Sbjct: 62  SGNALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEDVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  ++  +S+ + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPE-EEIDFLEAADARGKLTRIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R+T+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYTE 337
            E+E AD++L L +        +      FP+ +  + +  K+DL              E
Sbjct: 301 SEIERADVVLHLLDARTGMTAEDDAIAGRFPRGVPVVRVLNKTDLTGLAPATQALDADLE 360

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
             +  +S+  G+G+  L +++  I   +         + +RHL  L     +L  A+ + 
Sbjct: 361 LSEVRLSAKQGDGVALLRDELLRIAGWQAG-AESVYLARERHLIALRAAEEHLATAAAHA 419

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464


>gi|33151312|ref|NP_872665.1| tRNA modification GTPase TrmE [Haemophilus ducreyi 35000HP]
 gi|46577376|sp|Q7U344|MNME_HAEDU RecName: Full=tRNA modification GTPase mnmE
 gi|33147532|gb|AAP95054.1| tRNA modification GTPase TrmE [Haemophilus ducreyi 35000HP]
          Length = 452

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 157/454 (34%), Positives = 245/454 (53%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      + I+R+SGP   QV + I   K   PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATPIGRGGVGILRVSGPLAQQVAQEILG-KTLTPRLAHYLPFKDNDGEILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F +P SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+D
Sbjct: 61  IALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILTINGIRIARTGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI + +E   R +++ + GE S+   Q +D++ ++R+++EA +DF + E++
Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDQVIYLRTYVEAAIDFPD-EEI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +  ++   +  + + +++   + K G I+R G K VI G  NAGKSSL NALA ++ 
Sbjct: 180 DFLADGKIERHLNDIIHQLAAVRQEAKQGSILREGMKAVIAGRPNAGKSSLLNALAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   + L+G  + I DTAG+RE  D VEK GI+R + E+  AD +LL
Sbjct: 240 AIVTNIAGTTRDVLHEHIHLDGMPLHIIDTAGLREASDEVEKIGIQRAWNEIVAADHVLL 299

Query: 305 LKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + +   +   +F           P  +    I  K DL                 +S+ T
Sbjct: 300 MLDSTEQSAYAFKTEWAEFLAKLPPKMPITIIRNKVDLSGEVEGLTQLDGFTLIRLSAQT 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIA 406
             G++ L   +K+ +  +         + +RHL  L    ++L    +        +++A
Sbjct: 360 KIGVDVLREHLKTSMGYQ-SSTEGGFLARRRHLQALETAAKHLTQGHIQLTQFFAGELLA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRL   +L +ITG    + LL  IFS FCIGK
Sbjct: 419 EELRLVQNTLSEITGQFTSDDLLGNIFSSFCIGK 452


>gi|326560694|gb|EGE11062.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 46P47B1]
          Length = 466

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/461 (35%), Positives = 256/461 (55%), Gaps = 31/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG   +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   + N +  + + I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLVLNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLIMVY 307

Query: 307 EINSKKEISFPKN----------------IDFIFIGTKSDLY----------STYTEEYD 340
           ++ ++ +     +                   I +  KSDL            T +    
Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLISKPVLQVSCETKSAPKL 367

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKD 399
             +S  TGEGL+ELI  +   +   F     S+ +  RHL  L++   Y +E        
Sbjct: 368 VYVSCETGEGLDELIEILTQKV--GFHPPENSLIARTRHLDALNRAKGYAIEAYEQLTIY 425

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +++AE+LR +  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 426 HAGELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466


>gi|114571503|ref|YP_758183.1| tRNA modification GTPase TrmE [Maricaulis maris MCS10]
 gi|122314956|sp|Q0AKE8|MNME_MARMM RecName: Full=tRNA modification GTPase mnmE
 gi|114341965|gb|ABI67245.1| tRNA modification GTPase trmE [Maricaulis maris MCS10]
          Length = 438

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 178/437 (40%), Positives = 254/437 (58%), Gaps = 5/437 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           T++A++T A  S +++IRLSG     + + +    +P PR A+LR      G ++D+GL+
Sbjct: 4   TVYALATPAGRSGVAVIRLSGGGAGGMLDALAGLPRPQPRMATLRALRDSGGSVMDRGLV 63

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP P SFTGEDSAEFHVHGG AV++ +L  L        A  GEF+RRAFEN KIDL 
Sbjct: 64  LWFPGPGSFTGEDSAEFHVHGGPAVIDAVLSAL-DEAGAHPAEAGEFTRRAFENEKIDLT 122

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           EAE LADLI +ETE QR  ++  MSG L  LY  W D L    + IE ++DF +E DV +
Sbjct: 123 EAEGLADLIDAETEGQRVQALSQMSGSLRRLYDGWRDALITAMASIEGEIDFPDEADVPD 182

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             S      +  L   +  H+  G+ GE IR G+ IV++G  NAGKSSL N LA++D AI
Sbjct: 183 ALSHAAYEPLSELIGSMFEHLDDGRRGERIRIGFSIVLIGAPNAGKSSLLNCLARRDAAI 242

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTDIPGTTRD++ + L L G+ V ISDTAG+RE  D +E EG++R     E+ADL + + 
Sbjct: 243 VTDIPGTTRDIVEVQLTLGGFPVVISDTAGLREAVDAIEAEGVRRALDRAEHADLRIGVA 302

Query: 307 EINSKKEISFPKNIDFI---FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           +  S +E+   +         +  K DL      +  + +S+ +G+G+E L  +I+ I+ 
Sbjct: 303 DARSDEELVDLEGRLTDGDLLVLNKLDLGLVSERDGAYRLSAKSGDGVEALEARIEQIVR 362

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
           ++         S  RH   +   +  L        D   ++  E+ RLA  +L  +TG V
Sbjct: 363 DRLSVREMPALSRVRHRRAVETALEALSRCRDQLADAP-ELAGEDARLAVRALESLTGRV 421

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE +LD +FS+FCIGK
Sbjct: 422 DVEDILDRVFSQFCIGK 438


>gi|190171252|gb|ACE63696.1| ThdF [Leclercia adecarboxylata ATCC 23216]
          Length = 439

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 150/442 (33%), Positives = 240/442 (54%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +       + I+R+SG    +V E +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQAHPPGRGGVGILRISGQKAREVAEAVLG-KLPKPRYADYLPFKDTDGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  + +D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNAVMSDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P N+    +  K+D+       S         +S+ TGEG++
Sbjct: 299 TTAAVDPAAIWPDFIARLPANLPITVVRNKADVTGETLGLSDVNGHSLIRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
           EL + +K  +      +     + +RHL  L +  ++L+            +++AE LRL
Sbjct: 359 ELRDHLKQSMGFD-TSMEGGFLARRRHLQALEEAAQHLDQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|253702732|ref|YP_003023921.1| tRNA modification GTPase TrmE [Geobacter sp. M21]
 gi|251777582|gb|ACT20163.1| tRNA modification GTPase TrmE [Geobacter sp. M21]
          Length = 455

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 151/455 (33%), Positives = 236/455 (51%), Gaps = 22/455 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
           ++TI A+ST      I I+R+SGP+  Q+   I    K      S R+ +G       G 
Sbjct: 4   RDTIAAISTPVGEGGIGIVRISGPASLQIARSIF-NAKSNGGLKSHRFSYGEVVQPGTGD 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ + +   +P S+T ED  E   HGG  VV+ IL  L      R A PGEF++RAF 
Sbjct: 63  LVDEAMAVYMKAPNSYTREDVVEIQCHGGTLVVSRILS-LVISQGARPAEPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL++AE++ D+ISS T+    L+     G LS       + + +  +++EA +DF 
Sbjct: 122 NGRIDLVQAEAVMDVISSRTDASLALAQHQREGLLSRRISTVKEGIVYALAYVEALIDFP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV      +VL  +     ++ + I+    G ++R+G  +VI G  N GKSSL N L
Sbjct: 182 E-DDVNVAVETDVLGKVAPALAELDALITGFDEGRVLRDGVSVVIAGKPNVGKSSLLNTL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K+  AIVT +PGTTRD++   +++ G  VK+ DTAGIRE+DD VE+EG++ +   +  A
Sbjct: 241 LKEKRAIVTSVPGTTRDLIEEVVNINGLPVKLLDTAGIRESDDQVEQEGVRLSLDRIPKA 300

Query: 300 DLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-----ISSFTG 348
           DL+L + +      +     +    +   I +  KSDL        D       IS+ TG
Sbjct: 301 DLVLFVIDGSSVFGVEDATILQAVGSKSCIVVRNKSDLPLAAELPSDCFAPVVAISTHTG 360

Query: 349 EGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           EG+ +L + I +   +        F   S  RH   L +    L+    N E    ++++
Sbjct: 361 EGVPQLRDAISNAFMHGHAIDGREFVALSKARHRDALLKARESLQSFVANLESGVNMELL 420

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +LR A  ++G++TG    + +LD IFS FCIGK
Sbjct: 421 PVDLRDALDAVGEVTGETTADDVLDRIFSSFCIGK 455


>gi|190171236|gb|ACE63688.1| ThdF [Enterobacter radicincitans]
          Length = 439

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 149/442 (33%), Positives = 233/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGVKARDVAQAVLG-KLPKPRYADYLPFQDADGSALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLE 352
           +   +             P  +    +  K+D+        D         S+ TGEG++
Sbjct: 299 TTDAVDPAEIWPDFIARLPARLPITVVRNKADVTGEPLGISDVNNHSLVRLSARTGEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L   +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRQHLKQSMGFD-TSMEGGFLARRRHLQALEAAAEHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQNLSEITGEFTSDDLLGRIF 439


>gi|304392709|ref|ZP_07374649.1| tRNA modification GTPase TrmE [Ahrensia sp. R2A130]
 gi|303295339|gb|EFL89699.1| tRNA modification GTPase TrmE [Ahrensia sp. R2A130]
          Length = 429

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 188/436 (43%), Positives = 272/436 (62%), Gaps = 9/436 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+G+LPS +++IRLSGP      + +  +    PRKA+L      DGR+LD+ L
Sbjct: 2   DTIFALSSGSLPSGVAVIRLSGPGALTTVKALTGRSL-QPRKATLCRLSSDDGRVLDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED AE H HGG A V+ +L EL    +LR A PGEFSRRAF NGK+DL
Sbjct: 61  VLTFPEPASFTGEDCAELHCHGGCATVDAVLTELVTFDDLRPAEPGEFSRRAFANGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE L+DLI ++TE QR L++E M G L  LY  W   L  +R+F EA +DFS+E DV 
Sbjct: 121 TQAEGLSDLIVAQTESQRLLALEQMQGGLRELYEGWRKDLIRVRAFFEASIDFSDEGDVP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           + ++ E+ N++  ++  I +H+   + GEIIR+G+++ ++G  NAGKSSL NALAK+D+A
Sbjct: 181 DEAAAELWNEVAAIRTAIDNHLDDNRSGEIIRDGFRVALIGPPNAGKSSLLNALAKRDIA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV D  GTTRDVL   +DL G++V++ DTAG+R T++ VE+EGI+R     + ADL+L L
Sbjct: 241 IVDDEAGTTRDVLETVIDLGGHMVRLFDTAGMRNTENRVEQEGIRRAEKTADAADLVLWL 300

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           +              + + + +K+DL +     +    S  + + L+ L++ +   L++ 
Sbjct: 301 QPSTDLLVSPETVPSNAMIVRSKADLENVDGLSF----SVMSDDALQPLLDLLWQRLNHA 356

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII-AENLRLASVSLGKITGCVD 424
             +      S  RH   L   V  L  A   + D   DII  E LR+AS +L +ITG  D
Sbjct: 357 VAQREHVSLSRARHRAALLDCVAQLNEALNRQTD---DIIRCEYLRVASEALARITGRTD 413

Query: 425 VEQLLDIIFSKFCIGK 440
           VE LLD+IFS+FC+GK
Sbjct: 414 VEDLLDVIFSEFCVGK 429


>gi|23100946|ref|NP_694413.1| tRNA modification GTPase TrmE [Oceanobacillus iheyensis HTE831]
 gi|32171820|sp|Q8CX54|MNME_OCEIH RecName: Full=tRNA modification GTPase mnmE
 gi|22779181|dbj|BAC15447.1| tRNA modification GTPase [Oceanobacillus iheyensis HTE831]
          Length = 459

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/459 (30%), Positives = 240/459 (52%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           + +TI A+ST     AI+I+RLSG     +   I + K       S    +G        
Sbjct: 3   DTDTITAISTPVGEGAIAIVRLSGSEAITITSQIFEGKN-LQEVPSHTIQYGKIIDPGTN 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            + ++ ++ +   P++FT ED  E + HGG+  VN +LE +     +RLA PGEF++RAF
Sbjct: 62  EVAEEVMVSIMRGPKTFTREDVVEINCHGGMVAVNRVLE-IVLAKGVRLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            +G+IDL +AE++ DLI ++T+    ++++ M G LS L  +   +L    + +E ++D+
Sbjct: 121 LHGRIDLSQAEAVMDLIRAKTDKAMSVALKQMDGRLSKLIQKLRQELLETVAHVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  S   +      +++++   +   + G+I+R G    I+G  N GKSSL N 
Sbjct: 181 PEYDDVEEMSHAMMKEKSKEVRDELDKLLQIAQQGKILREGLSTAIIGRPNVGKSSLMNT 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVT+IPGTTRD++   +++ G  +++ DTAGIRET+DIVE+ G+ R+   ++ 
Sbjct: 241 LVQENKAIVTEIPGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVDRSRQVLKE 300

Query: 299 ADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTY---------TEEYDHLI 343
           +DLIL +         + KK       +++I I  K+DL              +      
Sbjct: 301 SDLILFVLNYNEPLSEDDKKLFEAVDGLEYIVIINKTDLEQQLDLDEVREFAKDRPVVTT 360

Query: 344 SSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCG 401
           +    +G++EL   I     +        +  S+ RH+  L Q  + LE A    E    
Sbjct: 361 ALLEEQGVDELEKAIADTFFTGDIDTGDMTYVSNVRHIQLLKQAKQALEDAMEGIELGMP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI+  ++  +   +G+I G    + L+D +FS+FC+GK
Sbjct: 421 MDIVQIDVTRSWEFMGEIIGDTASDSLIDQLFSQFCLGK 459


>gi|167627608|ref|YP_001678108.1| tRNA modification GTPase TrmE [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189036203|sp|B0TYD1|MNME_FRAP2 RecName: Full=tRNA modification GTPase mnmE
 gi|167597609|gb|ABZ87607.1| GTPase of unknown function [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 450

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 147/454 (32%), Positives = 248/454 (54%), Gaps = 21/454 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + K+TI AV+T      I I+R+SG     + E + KK+   PR A+    + ++  I+D
Sbjct: 2   YTKDTIVAVATPQGNGGIGIVRISGSDALSIAEKLTKKRL-KPRYATFCNIYNIN-EIID 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++I F SP S+TGED  E   HG   ++N I++   +    R+AN GEF+ RAF N K
Sbjct: 60  HGIVIFFNSPNSYTGEDVVEIQAHGNPFILNLIIKATLE-YGARMANAGEFTERAFLNNK 118

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++AD+I++ +E   + + + + G+ S      ++KL ++R ++EA +DF E E
Sbjct: 119 LDLTQAEAVADIINASSETAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPE-E 177

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++     +++ N +  +   I    +  K G I+  G  ++++G  NAGKSSL NALA K
Sbjct: 178 EINFLEDQKIHNSLQDIYKTILDVKNSCKQGAILVEGITLILVGKPNAGKSSLLNALAGK 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR   +++ AD I
Sbjct: 238 ESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRSSDDIIESEGIKRAIKKIQEADQI 297

Query: 303 LLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEYDHL--ISSF 346
           L + +  +  ++ F              PK+ID  ++  K DL       +D+   IS+ 
Sbjct: 298 LFVTDDYTNSQVKFSDIKDIIPEFYHQIPKDIDITYVHNKIDLLKEVPLNHDNHIYISAE 357

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
           +  G+++L + I + +     +      + +RH+  +     ++++A    +    +++A
Sbjct: 358 SNIGIDKLKDHILAKV-GYTTQNESIYTARERHVTAIDNAFDHIKLAKEQLELGNGELLA 416

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E L +    L  ITG    + LL  IFS FCIGK
Sbjct: 417 EELLIVQEHLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|296114112|ref|YP_003628050.1| tRNA modification GTPase TrmE [Moraxella catarrhalis RH4]
 gi|295921806|gb|ADG62157.1| tRNA modification GTPase TrmE [Moraxella catarrhalis RH4]
          Length = 466

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/461 (35%), Positives = 255/461 (55%), Gaps = 31/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG   +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAHFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                + N +  + + I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LPDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307

Query: 307 EINSKKEISFPKN----------------IDFIFIGTKSDLY----------STYTEEYD 340
           ++ ++ +     +                   I +  KSDL            T +    
Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLVSKPVLQVSCETKSAPKL 367

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKD 399
             +S  TGEGL+ELI  +   +   F     S+ +  RHL  L++   Y +E        
Sbjct: 368 VYVSCETGEGLDELIEILTQKV--GFHPPENSLIARTRHLDALNRAKGYAIEAYEQLTIY 425

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +++AE+LR +  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 426 HAGELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466


>gi|190171180|gb|ACE63660.1| ThdF [Enterobacter aerogenes]
          Length = 439

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 149/442 (33%), Positives = 236/442 (53%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKARDVAQAVLG-KLPKPRYADYLPFKDADGTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+ANPGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIANPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ TGEG+E
Sbjct: 299 TTSAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGLSEVNGHSLIRLSARTGEGVE 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFD-TNMEGGFLARRRHLQALETAADHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           +  +L +ITG    + LL  IF
Sbjct: 418 SQQALSEITGEFTSDDLLGRIF 439


>gi|264680930|ref|YP_003280840.1| tRNA modification GTPase TrmE [Comamonas testosteroni CNB-2]
 gi|262211446|gb|ACY35544.1| tRNA modification GTPase TrmE [Comamonas testosteroni CNB-2]
          Length = 475

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/477 (33%), Positives = 243/477 (50%), Gaps = 40/477 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     +   +C K+   PR+A+   F    G  
Sbjct: 2   LPRHNDPIAAIATAPGRGAVGIVRVSGKGIAALVRTLCGKEL-KPREATYLPFRDAGGSP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP------------NLRLA 108
           +D GL I FP P S+TGED  E   HGG  V+  +L    +               LRLA
Sbjct: 61  IDHGLAIYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQSANEDGKPVLTGLRLA 120

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
            PGEF+ RAF N KIDL +AE++ADLI + TE   R +   +SG  S       D L H+
Sbjct: 121 QPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSQEIHVLRDALVHL 180

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           R  +EA LDF E E++      +    +  L++ +++ +++   G ++R G K+VI G  
Sbjct: 181 RMLVEATLDFPE-EEIDFLQKADAFGQLERLRHQVTAVLARAHQGALLREGIKVVIAGQP 239

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R++DD VE+ G
Sbjct: 240 NAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSDDEVERIG 299

Query: 289 IKRTFLEVENADLILLLKEINSKKEI---------------SFPKNIDFIFIGTKSDLYS 333
           I R + E+  AD +L L ++   ++                  P  +  I +  K+D+ +
Sbjct: 300 IARAWDEIAAADAVLFLHDLTRVEQADYAAADADIARTLQDKLPAQVPVIHVWNKTDMAA 359

Query: 334 TYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
              +             +S+ TG+GL+ L  ++  +   +         +  RH+  L  
Sbjct: 360 ADVQSRHTAQLNAEQIALSARTGDGLDALRKRLLEVAGWQ-SAPEGLYLARARHVEALQA 418

Query: 386 TVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +LEMA   L  +   LD++AE LRLA +SL  ITG    + LL +IFS FCIGK
Sbjct: 419 VDAHLEMADEQLAAQSAHLDLLAEELRLAQLSLNSITGEFSSDDLLGVIFSSFCIGK 475


>gi|190171272|gb|ACE63706.1| ThdF [Cronobacter malonaticus]
 gi|190171274|gb|ACE63707.1| ThdF [Cronobacter malonaticus]
 gi|190171278|gb|ACE63709.1| ThdF [Cronobacter malonaticus]
 gi|190171280|gb|ACE63710.1| ThdF [Cronobacter malonaticus]
 gi|190171282|gb|ACE63711.1| ThdF [Cronobacter malonaticus]
 gi|190171284|gb|ACE63712.1| ThdF [Cronobacter malonaticus]
          Length = 439

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 148/442 (33%), Positives = 232/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                 P  +    +  K+D+       S         +S+ T EG++
Sbjct: 299 TTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGLSEVNGHSLIRLSARTNEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|190171270|gb|ACE63705.1| ThdF [Cronobacter genomosp. 1]
 gi|190171276|gb|ACE63708.1| ThdF [Cronobacter malonaticus]
 gi|190171298|gb|ACE63719.1| ThdF [Cronobacter sakazakii]
 gi|190171300|gb|ACE63720.1| ThdF [Cronobacter sakazakii]
 gi|190171302|gb|ACE63721.1| ThdF [Cronobacter sakazakii]
 gi|190171306|gb|ACE63723.1| ThdF [Cronobacter sakazakii]
 gi|190171308|gb|ACE63724.1| ThdF [Cronobacter sakazakii]
 gi|190171310|gb|ACE63725.1| ThdF [Cronobacter sakazakii]
 gi|190171320|gb|ACE63730.1| ThdF [Cronobacter sakazakii]
 gi|190171324|gb|ACE63732.1| ThdF [Cronobacter sakazakii]
 gi|190171330|gb|ACE63735.1| ThdF [Cronobacter sakazakii]
 gi|190171336|gb|ACE63738.1| ThdF [Cronobacter sakazakii]
 gi|190171338|gb|ACE63739.1| ThdF [Cronobacter sakazakii]
 gi|190171340|gb|ACE63740.1| ThdF [Cronobacter sakazakii]
 gi|190171342|gb|ACE63741.1| ThdF [Cronobacter sakazakii]
          Length = 439

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 148/442 (33%), Positives = 232/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                 P  +    +  K+D+       S         +S+ T EG++
Sbjct: 299 TTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|73543138|ref|YP_297658.1| tRNA modification GTPase TrmE [Ralstonia eutropha JMP134]
 gi|123623715|sp|Q46VM0|MNME_RALEJ RecName: Full=tRNA modification GTPase mnmE
 gi|72120551|gb|AAZ62814.1| tRNA modification GTPase trmE [Ralstonia eutropha JMP134]
          Length = 475

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/478 (33%), Positives = 243/478 (50%), Gaps = 41/478 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M      I A++T      I ++R+SGP    V   IC  +   PR A+   F    G++
Sbjct: 1   MTAPLPPIAAIATAPGRGGIGVVRVSGPDVRPVMHAICG-QALKPRHATYLPFLDGHGKV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRA 117
           +D GL + FP P S+TGE+  E   HGG  V+  +L    +      LRLA PGEF+RRA
Sbjct: 60  IDHGLALYFPGPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGHGIGLRLAEPGEFTRRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K+DL +AE++ADLI + TE   R +   M GE S      ++K+ H+R  +EA LD
Sbjct: 120 FLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSHAIHTLVEKVIHLRMLVEATLD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E E++    + +    +  ++ND+ + ++Q + G ++R G  +V+ G  N GKSSL N
Sbjct: 180 FPE-EEIDFLEASDARGQLATIRNDLGNVLAQARQGALLREGLSVVLAGQPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEV 296
           ALA  ++AIVT I GTTRD +   + +EG  + I DTAG+R E  D VE+ GI+RT+  +
Sbjct: 239 ALAGAELAIVTPIAGTTRDRVKETIQIEGIPLHIIDTAGLRDEATDEVERIGIERTWDAI 298

Query: 297 ENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTY------ 335
             AD++L L +               I+ +     P     + +  K D+  T       
Sbjct: 299 RRADIVLHLVDATDYLRHGLSEIDDAIDDRLSGQLPPGAPIVRVVNKIDVAPTVGGMMFS 358

Query: 336 -----------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                          +  IS+ TG G+E L  ++  ++  +      +  + +RHL  L 
Sbjct: 359 GNRPHVVAANGPNPTEIWISARTGSGIELLRKELLRLVGWQSGN-EGTFLARERHLTALR 417

Query: 385 QTVRYLEMASLN--EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           Q   +L++A+     +   LD+ AE LRLA   L  ITG    + LL  IF++FCIGK
Sbjct: 418 QAQSHLDVAAEQSERQAQALDLFAEELRLAQEHLNSITGEFTSDDLLGTIFTRFCIGK 475


>gi|190171322|gb|ACE63731.1| ThdF [Cronobacter sakazakii]
 gi|190171326|gb|ACE63733.1| ThdF [Cronobacter sakazakii]
          Length = 439

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 148/442 (33%), Positives = 232/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRVSGQQARNVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                 P  +    +  K+D+       S         +S+ T EG++
Sbjct: 299 TTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|300692994|ref|YP_003753989.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Ralstonia solanacearum PSI07]
 gi|299080054|emb|CBJ52729.2| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Ralstonia solanacearum PSI07]
          Length = 474

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 151/460 (32%), Positives = 242/460 (52%), Gaps = 29/460 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
            I A++T      I ++R+SGP    V + +C +    PR+A+   F   DG  +D+G+ 
Sbjct: 18  PIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGR-LLQPRQATYLPFLDADGSAIDRGIA 76

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRAFENGKI 123
           + FP+P S+TGED  E   HGG  V+  +L    +      LR+A PGEF+RRAF N K+
Sbjct: 77  LWFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGHGIGLRVAEPGEFTRRAFLNDKL 136

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + TE   R +   + G  S      ++++ H+R  +EA LDF E E+
Sbjct: 137 DLAQAEAVADLIEASTEAAARSAARSLDGAFSQAVHALVERVIHLRMLVEATLDFPE-EE 195

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +    + +    +  ++  +   ++Q + G ++R G  +V+ G  N GKSSL NALA  +
Sbjct: 196 IDFLEASDARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAE 255

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT+  +  AD++L
Sbjct: 256 LAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVL 315

Query: 304 LLKE---------------INSKKEISFPKNIDFIFIGTKSDLY------STYTEEYDHL 342
            L +               I+++     P  +  + +  K DL           +  +  
Sbjct: 316 HLLDAADYRAHGLCAEDAAIDARIAGHVPSGVPTLRVINKIDLTGLAVPGRVDAQPPEVW 375

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDC 400
           +S+  G G+E L   +  I   +         + +RHL  L     +L + +   +++  
Sbjct: 376 LSARDGSGIESLRAALLEIAGWQ-GGGEGLYLARERHLAALRAAKAHLAIGADHADQQAQ 434

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 435 SLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 474


>gi|281412323|ref|YP_003346402.1| tRNA modification GTPase TrmE [Thermotoga naphthophila RKU-10]
 gi|281373426|gb|ADA66988.1| tRNA modification GTPase TrmE [Thermotoga naphthophila RKU-10]
          Length = 450

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 159/454 (35%), Positives = 250/454 (55%), Gaps = 24/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDKG 64
           +TI AV+T     AI+I+RLSGP  ++V +   + + K  PR+A   +    +G  +D+ 
Sbjct: 2   DTIVAVATPHGKGAIAILRLSGPDSWKVVQKHLRTRSKIIPRRAIHGWIH-ENGEDVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I + SP+S+TGED  E   HGG  VV  +L+ L      R+A PGEF++RAF NGK+D
Sbjct: 61  VVIFYKSPKSYTGEDMVEVMCHGGPLVVKKMLD-LFLRSGTRMAEPGEFTKRAFLNGKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE++ DLI +++E   +LS+  + G L          L  I + I  +LD+    D 
Sbjct: 120 LTSAEAVRDLIEAKSETGLKLSLRNLKGGLRGFIENLRRDLIEILAEIRVELDYP---DE 176

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               +  V+  +  +K +++  + +   G ++  G ++VI+G  N GKS+L N L  +D 
Sbjct: 177 IETDTGGVVTKLEQIKEELTEELRKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDR 236

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIVTDIPGTTRDV++ ++ ++G L +I DTAG+R ET+D+VE+ GI+RT  EVE AD++L
Sbjct: 237 AIVTDIPGTTRDVISEEIVIKGILFRIVDTAGVRSETNDLVERLGIERTLQEVEKADIVL 296

Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----------ISSFT 347
            + + +S      +K +   KN  ++ +  K D+     EE              IS+  
Sbjct: 297 FVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALK 356

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIA 406
           GEGLE+L   I       F++   S+ ++ R    L     +LE A  + K    +D+ +
Sbjct: 357 GEGLEKLEEAIYRETQEIFERGSDSLITNLRQKQLLENVKAHLEDAIRSLKEGMPVDMAS 416

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  A   L ++TG    E LLD IFS FC+GK
Sbjct: 417 IDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 450


>gi|320117061|ref|YP_004187220.1| tRNA modification GTPase TrmE [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|319930152|gb|ADV80837.1| tRNA modification GTPase TrmE [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 462

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/464 (34%), Positives = 243/464 (52%), Gaps = 26/464 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGL 56
           M    +TI A+ST    + I I+RLSG    ++   I K  K       +  +L Y   +
Sbjct: 1   MKMVFDTIAAISTFPGEAGIGIVRLSGDDALEIISKIFKPYKSKDIKKVKSHTLHYGHIV 60

Query: 57  DGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           D     + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF
Sbjct: 61  DPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLK-QGARLAEPGEF 119

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG+IDL +AE++ D+I ++T +  R + + + G + S   +  DK+  +   + 
Sbjct: 120 TKRAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLLVHLL 179

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF E EDV+    KE+L     +  DI   I+  + G IIR G K  I+G  N GKS
Sbjct: 180 ALIDFPE-EDVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKS 238

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++ 
Sbjct: 239 SLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVTKSK 298

Query: 294 LEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--------- 338
             +  ADLIL + + + +      +        + IF+  K DL     E+         
Sbjct: 299 EVLAEADLILFVLDASRELTKEDYEIFDILTGKNIIFVLNKIDLPKKIDEKELKDLTKDG 358

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEM-ASLN 396
               +S+    GLEEL N I +++      L    I  + RH   L    +Y+E      
Sbjct: 359 IIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALINAKKYMESCVEAI 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E     D+I  +L  A   LGKITG    E L++ IF +FC+GK
Sbjct: 419 EGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 462


>gi|326563099|gb|EGE13372.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 12P80B1]
          Length = 466

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/461 (35%), Positives = 256/461 (55%), Gaps = 31/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG   +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   + N +  + + I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLIMVY 307

Query: 307 EINSKKEISFPKN----------------IDFIFIGTKSDLY----------STYTEEYD 340
           ++ ++ +     +                   I +  KSDL            T +    
Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLISKPVLQVSCETKSAPKL 367

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKD 399
             +S  TGEGL+ELI  +   +   F     S+ +  RHL  L++   Y +E        
Sbjct: 368 VYVSCETGEGLDELIEILTQKV--GFHPPENSLIARTRHLDALNRAKGYAIEAYEQLTIY 425

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +++AE+LR +  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 426 HAGELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466


>gi|299530922|ref|ZP_07044336.1| tRNA modification GTPase TrmE [Comamonas testosteroni S44]
 gi|298721143|gb|EFI62086.1| tRNA modification GTPase TrmE [Comamonas testosteroni S44]
          Length = 475

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/477 (33%), Positives = 243/477 (50%), Gaps = 40/477 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     +   +C K+   PR+A+   F    G  
Sbjct: 2   LPRHNDPIAAIATAPGRGAVGIVRVSGKGIAALVRALCGKEL-KPREATYLPFRDAGGSP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP------------NLRLA 108
           +D GL I FP P S+TGED  E   HGG  V+  +L    +               LRLA
Sbjct: 61  IDHGLAIYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQSTNEDGKPVLTGLRLA 120

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
            PGEF+ RAF N KIDL +AE++ADLI + TE   R +   +SG  S       D L H+
Sbjct: 121 QPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAVRSASRSLSGAFSQEIHVLRDALVHL 180

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           R  +EA LDF E E++      +    +  L++ +++ +++   G ++R G K+VI G  
Sbjct: 181 RMLVEATLDFPE-EEIDFLQKADAFGQLERLRHQVTAVLARAHQGALLREGIKVVIAGQP 239

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R++DD VE+ G
Sbjct: 240 NAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSDDEVERIG 299

Query: 289 IKRTFLEVENADLILLLKEINSKKEI---------------SFPKNIDFIFIGTKSDLYS 333
           I R + E+  AD +L L ++   ++                  P  +  I +  K+D+ +
Sbjct: 300 IARAWDEIAAADAVLFLHDLTRVEQADYAAADADIARTLQDKLPAQVPVIHVWNKTDMAA 359

Query: 334 TYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
              +             +S+ TG+GL+ L  ++  +   +         +  RH+  L  
Sbjct: 360 ADVQSRHTAQLNAEQIALSARTGDGLDALRKRLLEVAGWQ-SAPEGLYLARARHVEALQA 418

Query: 386 TVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +LEMA   L  +   LD++AE LRLA +SL  ITG    + LL +IFS FCIGK
Sbjct: 419 VDAHLEMADEQLAAQSAHLDLLAEELRLAQLSLNSITGEFSSDDLLGVIFSSFCIGK 475


>gi|91790726|ref|YP_551678.1| tRNA modification GTPase TrmE [Polaromonas sp. JS666]
 gi|123164107|sp|Q121L2|MNME_POLSJ RecName: Full=tRNA modification GTPase mnmE
 gi|91699951|gb|ABE46780.1| tRNA modification GTPase trmE [Polaromonas sp. JS666]
          Length = 478

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 165/480 (34%), Positives = 244/480 (50%), Gaps = 43/480 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     V   IC +    PR+A+   F    G++
Sbjct: 2   LARHHDPIVAIATAPGRGAVGIVRVSGKDIAPVIAAICGRAL-APRQATYLPFRDAQGQV 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL-------------RL 107
           +D+GL I FP+P S+TGED  E   HGG  V+  +L    +                 R+
Sbjct: 61  IDQGLAIHFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAALNPAIGQPWLAQLRV 120

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEF+ RAF N KIDL +AE++ADLI + TE   R +   MSGE S      +++L H
Sbjct: 121 AQPGEFTERAFLNDKIDLAQAEAIADLIDASTETAARSAARSMSGEFSLAVNTLLEQLIH 180

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA LDF E ED+      +    +  L+  ++  + +   G I+R G K+VI G 
Sbjct: 181 LRMLVEATLDFPE-EDIDFLQKADAQGQLSRLQATLTGVMQRATQGAILREGIKVVIAGQ 239

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL NALA  ++AIVT I GTTRD ++  + +EG  + + DTAG+RE  D VEK 
Sbjct: 240 PNAGKSSLLNALAGAELAIVTPIAGTTRDKVSELIQIEGVPLHVVDTAGLREALDEVEKI 299

Query: 288 GIKRTFLEVENADLILLLKEINSKKEI----------------------SFPKNIDFIFI 325
           G++R + E+E+AD +L L +++ +                           P+N   I +
Sbjct: 300 GVERAWAEIESADAVLFLHDLSRRDAALPAQDTINYIAADDRIARTLANKLPENTAIIDV 359

Query: 326 GTKSDLYSTYTEEYDHL---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
             KSDL S    +       IS+ TG GL+ L  ++  ++  +         + +RH+  
Sbjct: 360 WNKSDLTSPAGLQQVQGGVLISAKTGAGLQTLRQRLLQVVGWQAA-PEGVFMARERHVRA 418

Query: 383 LSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L      L  A   L      LD++AE+LR A   L +ITG    + LL  IFS+FCIGK
Sbjct: 419 LHHVQDQLATAGRQLQAARPALDLLAEDLRQAQRQLSEITGEFTPDDLLGEIFSRFCIGK 478


>gi|190171258|gb|ACE63699.1| ThdF [Cronobacter dublinensis]
          Length = 439

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 148/442 (33%), Positives = 232/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                 P  +    +  K+D+       S         +S+ T EG++
Sbjct: 299 TTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFD-TSMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|56477029|ref|YP_158618.1| tRNA modification GTPase TrmE [Aromatoleum aromaticum EbN1]
 gi|81821140|sp|Q5P4P5|MNME_AZOSE RecName: Full=tRNA modification GTPase mnmE
 gi|56313072|emb|CAI07717.1| Thiophene and furan oxidation protein ThdF [Aromatoleum aromaticum
           EbN1]
          Length = 451

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 151/448 (33%), Positives = 245/448 (54%), Gaps = 19/448 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           + I A++T      I ++R+SG +       +  ++ P PR A+  +F    G+ +D+G+
Sbjct: 10  DIIAALATAPGRGGIGVVRVSGAALAPFARALTGRE-PKPRHAAFTHFVDAVGKPIDEGI 68

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+ FP+P SFTGED  E   HGG  V+  +L    ++   RLA PGEFSRRAF NGK+DL
Sbjct: 69  LLYFPAPHSFTGEDVIELQGHGGPVVLQLVLARCLEL-GARLAEPGEFSRRAFLNGKMDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI + T +  R ++  +SG  S    +  D L  +R  +EA LDF + EDV+
Sbjct: 128 AQAEAVADLIEASTVVAARSAVRSLSGVFSDEMHRLTDALIDLRMLVEATLDFPD-EDVE 186

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              +   L  +  ++  +   + + + G ++R+G  +V++G  N GKSSL N LA  + A
Sbjct: 187 FLENARALERLDAIRVKLERVLERARQGALLRSGMNVVLVGQPNVGKSSLLNCLAGDERA 246

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRD +   + +EG  + + DTAG+RET D VE+ G++RT+ E+  AD+IL +
Sbjct: 247 IVTDIAGTTRDAVRETIAIEGIPIHVIDTAGLRETADPVERLGVERTWREIARADVILRI 306

Query: 306 KEI-------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLE 352
            +        +   + + P+ ++ I I  K DL         H        S+    G++
Sbjct: 307 VDARVGPQPGDDAIDAALPEGVERITIFNKIDLCGLEPARLQHDDGVVIQLSAQLALGVD 366

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            L +++  +           + + +RHL  L   + ++   +   +   L++ AE LRLA
Sbjct: 367 LLRSELLRVA-GWHAHGDDVVLARERHLVALRDALTHV--VAARSQCGALELFAEELRLA 423

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +G+ITG    + LL +IFS+FCIGK
Sbjct: 424 QIRIGEITGEFSSDDLLGVIFSRFCIGK 451


>gi|299068431|emb|CBJ39655.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Ralstonia solanacearum CMR15]
          Length = 481

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 153/460 (33%), Positives = 244/460 (53%), Gaps = 29/460 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
            I A++T      I ++R+SGP    V + +C +    PR+A+   F   DG  +D+G+ 
Sbjct: 25  PIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGR-LLQPRQATYLPFLDADGAAIDRGIA 83

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRAFENGKI 123
           + FP+P S+TGED  E   HGG  V+  +L    +      LR+A PGEF+RRAF N K+
Sbjct: 84  LWFPAPHSYTGEDVFELQGHGGPVVMQLLLSRCLRAGHGIGLRVAEPGEFTRRAFLNDKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + TE   R +   + G  S      ++++ H+R  +EA LDF E E+
Sbjct: 144 DLAQAEAVADLIEASTEAAARSAARSLDGVFSQTVHALVERVIHLRVLVEATLDFPE-EE 202

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +    + +    +  ++  +   ++Q + G ++R G  +V+ G  N GKSSL NALA  +
Sbjct: 203 IDFLEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAE 262

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT+  +  AD++L
Sbjct: 263 LAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVL 322

Query: 304 LLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEE------YDHL 342
            L +               I+++     P  +  + +  K DL  T   +       +  
Sbjct: 323 HLLDAADYRAHGLSAEDATIDARIAEHVPSGVPTLRVINKIDLAGTAAPDRVDAQPPEVW 382

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDC 400
           +S+  G G+E L   +  I   +         + +RHL  L     +L +A+   +++  
Sbjct: 383 LSARDGSGIELLRAALLEIAGWQ-GGGEGLYLARERHLSALRTAREHLAIAADHADQRAQ 441

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 442 SLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 481


>gi|121596419|ref|YP_988315.1| tRNA modification GTPase TrmE [Acidovorax sp. JS42]
 gi|120608499|gb|ABM44239.1| tRNA modification GTPase trmE [Acidovorax sp. JS42]
          Length = 486

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/468 (34%), Positives = 241/468 (51%), Gaps = 31/468 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     + + +C +    PR+A+   F    G+ 
Sbjct: 22  LPRHSDPIVAIATAPGRGAVGIVRVSGKQIGALVQALCGRAL-KPREATYLPFRDAAGQA 80

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM-----PNLRLANPGEFSR 115
           +D+GL + FP+P S+TGED  E   HGG  V+  +L    +      P LRLA PGEF+ 
Sbjct: 81  IDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQGLLPRLRLAEPGEFTE 140

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N KIDL +AE++ADLI + TE   R +   +SG+ S       D L H+R  +EA 
Sbjct: 141 RAFLNDKIDLAQAEAIADLIDASTEAAARGASRSLSGDFSREIHTLRDALVHLRMLVEAT 200

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF E E++      +    +  LK  ++  + +   G ++R G K+VI G  NAGKSSL
Sbjct: 201 LDFPE-EEIDFLRKADASGQLSNLKRSLARVMQRASQGALLREGIKVVIAGQPNAGKSSL 259

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+RE+DD VE+ GI R + E
Sbjct: 260 LNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESDDEVERIGIARAWDE 319

Query: 296 VENADLILLLKEI---------NSKKEIS------FPKNIDFIFIGTKSDLYSTYT---- 336
           +  AD +L L ++         +    I+       P  +  + +  K+D          
Sbjct: 320 IAGADAVLFLHDLTRWGSAQYQDDDAAIAHTLSNRLPAGVPVVDVWNKADAAPQAAAPAR 379

Query: 337 --EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EM 392
             E    L+S+ TG+GL+ L  ++  I   +         +  RH+  L     +L    
Sbjct: 380 EGESQAVLLSARTGQGLDTLRRQLLQIAGWQ-SAAEGVYIARARHIEALRAVDAHLMEAA 438

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A L      LD++AE LRLA  +L  ITG    + LL +IFS FCIGK
Sbjct: 439 AQLESDGPALDLLAEELRLAQNALNTITGEFTSDDLLGVIFSSFCIGK 486


>gi|218529834|ref|YP_002420650.1| tRNA modification GTPase TrmE [Methylobacterium chloromethanicum
           CM4]
 gi|218522137|gb|ACK82722.1| tRNA modification GTPase TrmE [Methylobacterium chloromethanicum
           CM4]
          Length = 444

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 165/442 (37%), Positives = 257/442 (58%), Gaps = 4/442 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59
           +    +TIFA ++G   +A++++R+SGP+     + +   + P PR+ SLR     D R 
Sbjct: 5   LPQRDDTIFAPASGFGRAAVTVVRISGPAAGLALDRLAGGR-PEPRRLSLRRLRDPDSRD 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ L+   P P + TGED AE H+HGG+AV + +L  LA +P  R A  G FSRRAF 
Sbjct: 64  LLDQALVAWLPGPATATGEDMAELHLHGGLAVRSAVLRALAGVPGCRPAEAGAFSRRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF- 178
           NG+IDL EAE +ADLI +ETE QR  ++  + G L      W +    + +  EA LDF 
Sbjct: 124 NGRIDLTEAEGIADLIDAETEAQRVQALRQLDGALGRQVAAWRETGIDLLAGAEAALDFA 183

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +         +      L++ I + ++ G+ GE +R G+ +V+ G  NAGKS+L NA
Sbjct: 184 DEGDVDDADLDAALSGRATALRDAIRAALADGRRGERLREGFCVVLAGAPNAGKSTLLNA 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L+ +D AIV+DIPGTTRD + +  DL G  V + DTAG+RET D +E EG+KRT   + +
Sbjct: 244 LSGRDAAIVSDIPGTTRDAIDVRCDLGGLPVVLVDTAGLRETADAIEAEGVKRTQSRIRS 303

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           ADL+L L   + + +     ++  + + TK+DL      E    IS+ TG GL+ L++ I
Sbjct: 304 ADLVLHLVPADGEADAGRFADVPVLLVRTKTDLAPEGPGEGSLAISAVTGAGLDALLDAI 363

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           ++       +   ++ + +RH   LS+   +L+  +        +++AE+LRLA  +LG+
Sbjct: 364 QASAQTALGQGD-ALVTRERHREALSRAAAHLDRVATAAAGFPPELVAEDLRLAVRALGE 422

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           + G V VE++LD +F+ FCIGK
Sbjct: 423 VGGHVGVEEMLDRLFAGFCIGK 444


>gi|227889160|ref|ZP_04006965.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii ATCC 33200]
 gi|227850389|gb|EEJ60475.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii ATCC 33200]
          Length = 487

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 144/459 (31%), Positives = 241/459 (52%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            + +TI A+ST      ISI+RLSG     +   + K      +  S    +G       
Sbjct: 32  TQFDTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGAD-LTKVPSHTIHYGHIVDPKT 90

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ ++ V  +P++FT ED  E + HGG+ V N IL+ L      R+A+PGEF++RA
Sbjct: 91  KDVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRA 149

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R+++M  ++G L         +L    +  E ++D
Sbjct: 150 FMNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIRTMRQELLDTMAHEEVNID 209

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D+ + +S+E+      +   I   +   + G+IIRNG    I+G  N GKSSL N
Sbjct: 210 YPEY-DMDDLTSQEMKKKAQEVSKQIDQLLKTAQEGKIIRNGLATAIVGRPNVGKSSLLN 268

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTDI GTTRD L   + ++G  +K+ DTAGI  T+D VEK G++R+   + 
Sbjct: 269 YLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVERSKKAIA 328

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLI 343
            ADL+LLL + +       K  ++   N   I I  K DL +  ++E           + 
Sbjct: 329 EADLVLLLLDASQDLTDEDKNLLNLTANKKRIIILNKQDLGTKISQEMIREITDNPIIVT 388

Query: 344 SSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CG 401
           S    + ++ L N I+ +  +  +      + +++R    L++  + LE       D   
Sbjct: 389 SILKQKNMDALENAIEQLFFSGIENSQNQILVTNQRQAGLLAKAKQSLEDVVNGIDDAMP 448

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD++  +L+ A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 449 LDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 487


>gi|150019907|ref|YP_001312161.1| tRNA modification GTPase TrmE [Clostridium beijerinckii NCIMB 8052]
 gi|189036196|sp|A6M3M5|MNME_CLOB8 RecName: Full=tRNA modification GTPase mnmE
 gi|149906372|gb|ABR37205.1| tRNA modification GTPase TrmE [Clostridium beijerinckii NCIMB 8052]
          Length = 462

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 159/466 (34%), Positives = 258/466 (55%), Gaps = 33/466 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGL---- 56
            E +TI A++T      +SIIR+SG +  ++   I   + K       +    +G     
Sbjct: 2   KEFDTICAIATPIGEGGVSIIRISGENVLKIASKIFTPRNKYDIESMKTYTMKYGNIVDL 61

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                I+D+ +L    +P S+TGE+  E + HGG+   N +L+++ K    RLA PGEF+
Sbjct: 62  ENKKEIIDEVILSYMKAPRSYTGENVVEINCHGGVISTNSVLDQVIKA-GARLAEPGEFT 120

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG+IDL +AE++ D+I+++TE+  + +M    G LS    +    L ++ + IE 
Sbjct: 121 KRAFLNGRIDLSQAEAVMDIITAKTELSMKAAMIQSKGALSKEINELRGYLLNVLALIEY 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKN---DISSHISQGKLGEIIRNGYKIVILGHSNAG 231
            +DF+E +D        +L     ++N    I + +S    G+I+R+G  IVI+G  N G
Sbjct: 181 AVDFTE-DDEDIVDDNLILQIKDGIENTNSKIETLLSNADAGKIVRDGLNIVIVGKPNVG 239

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NAL +++ AIVTD+PGTTRD++   ++L+G  VKI+DTAGIR+T+D+VEK G+++
Sbjct: 240 KSSLLNALLRENRAIVTDVPGTTRDIIEEYINLDGIPVKITDTAGIRDTEDVVEKIGVEK 299

Query: 292 TFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE------- 338
           +  ++E ADLI+L+ + +        + I+  KN  +I +  K DL     +E       
Sbjct: 300 SKEKIEEADLIILMLDASRYIDEEDSRIINKIKNRKYIVLLNKMDLKDIKIQEEILKNLS 359

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH----LSQTVRYLEMAS 394
               IS+ TG+G++ L +++K +  N        I S+ RH       L      L+  +
Sbjct: 360 NIINISAKTGQGIDILKDEVKKLFFNGEISSESLIISNARHKQALYKSLENCKMALDKIN 419

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            NE    LD+I+  +  A  +LG+ITG    E LL+ IFS+FC+GK
Sbjct: 420 ANEY---LDLISIYITAAMKALGEITGDELEEDLLNKIFSEFCVGK 462


>gi|187930816|ref|YP_001901303.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12J]
 gi|309780188|ref|ZP_07674939.1| tRNA modification GTPase TrmE [Ralstonia sp. 5_7_47FAA]
 gi|187727706|gb|ACD28871.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12J]
 gi|308920891|gb|EFP66537.1| tRNA modification GTPase TrmE [Ralstonia sp. 5_7_47FAA]
          Length = 481

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 152/460 (33%), Positives = 239/460 (51%), Gaps = 29/460 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
            I A++T      I ++R+SGP    V   +C +    PR+A+   F   DG  +D+G+ 
Sbjct: 25  PIAAIATAPGRGGIGVVRVSGPDVRAVMHAVCGR-LLTPRQATYLPFLDADGNAIDRGIA 83

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEFSRRAFENGKI 123
           + FP+P S+TGED  E   HGG  V+  +L+      +   LR+A PGEF+RRAF N K+
Sbjct: 84  LWFPAPHSYTGEDVLELQGHGGPVVMQLLLQRCLTAGREIGLRVAEPGEFTRRAFLNDKM 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + TE   R +   + G  S      ++++ H+R  +EA LDF E E+
Sbjct: 144 DLAQAEAVADLIEASTEAAARSAARSLDGAFSQTVHALVERVIHLRMLVEATLDFPE-EE 202

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +    + +    +  ++  +   ++Q + G ++R G  +V+ G  N GKSSL NALA  +
Sbjct: 203 IDFLEASDARGQLANIRTAVDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAE 262

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT+  +  AD++L
Sbjct: 263 LAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVL 322

Query: 304 LLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTY------TEEYDHL 342
            L +               I+++     P  +  + +  K DL           E  +  
Sbjct: 323 HLLDATDYRAKGLSPEDTAIDARIAEHVPAGVPTLRVINKIDLSGVAIPCRVDAEPPEVW 382

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDC 400
           +S+  G G+E L   +  I   +         + +RHL  L     +L        ++  
Sbjct: 383 LSARDGLGVELLRAALLEIAGWQ-GGGEGLYLARERHLAALRTAREHLATAAEHAAQQAQ 441

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 442 SLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 481


>gi|302393075|ref|YP_003828895.1| tRNA modification GTPase trmE [Acetohalobium arabaticum DSM 5501]
 gi|302205152|gb|ADL13830.1| tRNA modification GTPase trmE [Acetohalobium arabaticum DSM 5501]
          Length = 463

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 152/462 (32%), Positives = 255/462 (55%), Gaps = 28/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGL---- 56
           K+TI A+ST      I I+R+SGP   ++ + I K      K   +  +    +G     
Sbjct: 4   KDTIAAISTAVGEGGIGIVRISGPEAIEIADKIFKSYQQPDKKLNKVDTYTAHYGHIIKP 63

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
              ++LD+ + +V  +P+++T ED  E + HGG+  +  ILE L      RLA+PGEF++
Sbjct: 64  ETEQVLDEVISLVMKAPKTYTKEDVVEINCHGGMVPLQKILE-LVLDVGARLADPGEFTK 122

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I+S+TE     +M+ + G LS        K+  + + +EA 
Sbjct: 123 RAFLNGRIDLSQAEAIMDVINSQTEAGLEAAMDQLEGGLSDQINNISQKILRLLANLEAS 182

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF E+E +++F+S+E+   ++ + ++I   ++  K G I++ G +  I+G  N GKSSL
Sbjct: 183 IDFPEDE-IEDFNSEELEKRVIEILSEIEDLLATSKQGRIVKEGIQTAIIGKPNVGKSSL 241

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL +++ AIVT++PGTTRDV+   ++++G  +KI DTAGIRE ++ VEK GI+++   
Sbjct: 242 LNALLRENRAIVTEVPGTTRDVIEEVINIDGIPLKIIDTAGIREAENEVEKIGIEKSEKF 301

Query: 296 VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYD---- 340
           ++ ADL+LL+ +         +K I   +  D I +  K+DL          EE D    
Sbjct: 302 LKRADLVLLVLDAHCGITDEDRKIIGLAEGKDTIIVVNKTDLEPKLAVEELKEELDMEAV 361

Query: 341 HLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
              S+  G G++EL   I  ++   + K    ++ ++ RH   +      +       E+
Sbjct: 362 VETSATEGIGIKELEELISDMVFGGQIKSTDQTLITNLRHKEAIEDAYEDMNRVKETVEQ 421

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D   D +  +L+ A   LGKITG    E ++D IF+ FC+GK
Sbjct: 422 DLPADFVTIDLKSALEKLGKITGDTVDEDIIDRIFADFCLGK 463


>gi|325294918|ref|YP_004281432.1| tRNA modification GTPase mnmE [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065366|gb|ADY73373.1| tRNA modification GTPase mnmE [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 463

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/460 (35%), Positives = 256/460 (55%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK------KKKPFPRKASLRYFFGLDG 58
           ++TI A+ T     AI I+R+SG    ++ + I +      K+K   RK           
Sbjct: 6   EDTIAAIGTPIGKGAIGIVRISGKDSLKILKEIFRTKEGSKKEKFENRKMHYGLVVDRFE 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L +   +P++FTGED  E H HGGI VV  IL E+      RLA PGEFS RAF
Sbjct: 66  EPIDEVLAVYMRAPKTFTGEDIVEIHSHGGIVVVRKILREVL-SKGARLAEPGEFSMRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGKIDL++AE++ +LI++ +E+  +L+++ + G LS+   +  DKL  ++++IEA +DF
Sbjct: 125 INGKIDLVQAEAINELINATSEVGAKLALKQLEGALSNKIKELRDKLLEVKAYIEAAVDF 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            + E+++ F +  +   IL +   I   +S  K G++++ G K+ I+G  N GKSSL NA
Sbjct: 185 PD-EEIEIFETGHIREKILEIVEKIEKLVSTYKDGKVLKEGIKVAIVGRPNVGKSSLLNA 243

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           + K++ AIVT+IPGTTRD++   + L+G  +++ DTAGIRE  D VE+ GI+RT   +E 
Sbjct: 244 ILKEERAIVTEIPGTTRDIIEETVTLKGIPLRLIDTAGIREAIDKVEQIGIERTMKSLEE 303

Query: 299 ADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           AD+IL + +        + K      K  + I +  K DL        +   +    +S+
Sbjct: 304 ADVILFVIDGSIGFTEEDRKISKVLKKKENVILVINKKDLGLKLSCRESIDWKECVELSA 363

Query: 346 FTGEGLEELINKIKSIL---SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400
            + EG++EL  KI +++        K    + +++RH   L    + L     SL+    
Sbjct: 364 KSTEGIDELGEKIVNLVLLEPETILKGEEPLLTNERHRELLESAKKSLLKVIDSLDTGFE 423

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + I+ ++  A  SLGKI G V  E +LDIIFSKFCIGK
Sbjct: 424 SPEFISMDIDEALYSLGKIVGQVTTEDMLDIIFSKFCIGK 463


>gi|325185944|emb|CCA20448.1| tRNA modification GTPase GTPBP3 putative [Albugo laibachii Nc14]
          Length = 508

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 172/462 (37%), Positives = 264/462 (57%), Gaps = 28/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSC---FQVCEFICKKKKPFPRKASLRYFF-GLDGRI 60
            +TIFA+ST    + + IIR+SGP              +    PR A  R  +  +    
Sbjct: 49  NDTIFALSTAQGRAGVGIIRVSGPDATLCVHALSKQTNQSTIAPRIAEFRKLYHPITKEH 108

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD  +++ FP P+SFTGED  EF VHG  AV++G+L+ L+ +P  R+A PGEF+ RAFEN
Sbjct: 109 LDDAVVLHFPEPKSFTGEDVIEFQVHGSPAVISGVLQALSTVPRCRIAEPGEFTERAFEN 168

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K++L++ E+LADL+S+ETE QR  ++  +SG +      W  +L H  ++ EA +DF +
Sbjct: 169 QKMNLMQVEALADLLSAETESQRSQALRQLSGRIGETLEIWQKELIHCLAYTEAMIDFGD 228

Query: 181 EE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +E DV + S  +++     L++ +  H++ G+ GE++RNG ++ I+G  NAGKSSL N L
Sbjct: 229 DEDDVTDASYTKMIERAKGLQSHMKKHLNDGRRGELLRNGIQVAIIGPPNAGKSSLLNHL 288

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A++  AIV+ I GTTRD++ + L+L+GY V + DTAGIRETDD++EK G+ R     + A
Sbjct: 289 AQRPAAIVSSIAGTTRDIVRVPLNLKGYAVILCDTAGIRETDDLIEKVGVTRARECADEA 348

Query: 300 DLILLLKEI----NSKKEISFPKNIDFIFIGTKSDLYS----------------TYTEEY 339
           D+ +L+ +        +++S     + I +  KSDL                  +   E 
Sbjct: 349 DICVLMVDGQLYQTEWEDLSKSWTTNTIIVCNKSDLIDDESTLRKLQRSITSRTSIPAER 408

Query: 340 DHLISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            HLIS   G G++ LI  +   +  K       S+ + +RH  HL + + YL+    N  
Sbjct: 409 VHLISCLNGSGIDALIEALGESVQAKVSSSGDASVITRERHRQHLEKCINYLQEFIDNPH 468

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +  AE+LR A   +G+I G VDVEQ+LD+IF +FCIGK
Sbjct: 469 QS--EFAAEHLRRAVDGIGRILGRVDVEQVLDVIFEEFCIGK 508


>gi|221069752|ref|ZP_03545857.1| tRNA modification GTPase TrmE [Comamonas testosteroni KF-1]
 gi|220714775|gb|EED70143.1| tRNA modification GTPase TrmE [Comamonas testosteroni KF-1]
          Length = 475

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/477 (33%), Positives = 241/477 (50%), Gaps = 40/477 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     +   +C ++   PR+A+   F    G  
Sbjct: 2   LPRHNDPIAAIATAPGRGAVGIVRVSGKGLAALVRTLCGREL-KPREATYLPFRDAGGSP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP------------NLRLA 108
           +D GL I FP P S+TGED  E   HGG  V+  +L    +               LRLA
Sbjct: 61  IDHGLAIYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQSGSEDGRPVLTGLRLA 120

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
            PGEF+ RAF N KIDL +AE++ADLI + TE   R +   +SG  S       D L H+
Sbjct: 121 QPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSQEIHVLRDALVHL 180

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           R  +EA LDF E E++      +    +  L+  +++ +++   G ++R G K+VI G  
Sbjct: 181 RMLVEATLDFPE-EEIDFLQKADAFGQLERLRAQVTAVLARAHQGALLREGIKVVIAGQP 239

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R++DD VE+ G
Sbjct: 240 NAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSDDEVERIG 299

Query: 289 IKRTFLEVENADLILLLKEINSKKEI---------------SFPKNIDFIFIGTKSDLYS 333
           I R + E+  AD +L L ++   ++                  P  +  I +  K+D+ +
Sbjct: 300 IARAWDEIAAADAVLFLHDLTRVEQADYAAADADIARTLQGRLPAQVPVIHVWNKTDMAA 359

Query: 334 --------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
                            +S+ TG+GL+ L  ++  +   +         +  RH+  L  
Sbjct: 360 ADVQSRHTAQLNAQQIALSARTGDGLDALRKRLLEVAGWQ-SAPEGLYLARARHVEALQA 418

Query: 386 TVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +LEM  A L  +   LD++AE LRLA +SL  ITG    + LL +IFS FCIGK
Sbjct: 419 VDVHLEMADAQLAAQSAHLDLLAEELRLAQLSLNSITGEFSSDDLLGVIFSSFCIGK 475


>gi|134301153|ref|YP_001114649.1| tRNA modification GTPase TrmE [Desulfotomaculum reducens MI-1]
 gi|189036201|sp|A4J9S1|MNME_DESRM RecName: Full=tRNA modification GTPase mnmE
 gi|134053853|gb|ABO51824.1| tRNA modification GTPase trmE [Desulfotomaculum reducens MI-1]
          Length = 461

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 149/461 (32%), Positives = 248/461 (53%), Gaps = 27/461 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL-----D 57
            +TI A++T     +I +IR+SGP    + + + + K  K + +K + +  +G       
Sbjct: 3   DDTIVAIATALGEGSIGVIRMSGPDAITIGKKVFRPKYNKEWYQKDNYKIIYGHVINPET 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G I+D+ LL +   P+SFT ED  E   HGGI  +  +LE + +    R A PGEFS+R+
Sbjct: 63  GEIIDEVLLSIMRGPKSFTAEDVIEISCHGGIIPLRKVLEVILR-NGARHAEPGEFSKRS 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AES+ D+I ++T+   ++++  + G+LS        K+  + + IEA +D
Sbjct: 122 FLNGRLDLAQAESIIDIIRAKTDAGAKIAVNQLGGKLSEKVNGLQHKVLGLLAKIEAIID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E +D+   +   +  +   L  +I   ++    G+I R G K VI+G  N GKSSL N
Sbjct: 182 FPE-DDIPEENLLGISKECNSLIKEIEHLLAYADTGKIYREGLKTVIVGKPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  +  AIVTDIPGTTRDV+   L ++G  +KI DTAG+RET D+VEK G++++   + 
Sbjct: 241 ALLHEQRAIVTDIPGTTRDVIEEILSIKGVPLKIIDTAGLRETQDLVEKIGVEKSRELLN 300

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-------- 343
            AD++L + +         +K I   K+   + +  K D+     + ++           
Sbjct: 301 QADIVLFVLDATTGISDEDRKVIDLIKDKKVLILINKIDITKNKIDSHEIRQLINFSEII 360

Query: 344 --SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD- 399
             S+    GL++L   I ++ +  K         S+ RH + L + +++L  AS   ++ 
Sbjct: 361 EISAQKEIGLDKLEETIFNMVVEGKITTTDSIFVSNSRHKHALERAMQHLLEASKGLQEY 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D+++ +L+ +   LG+ITG    E L+D IFS FCIGK
Sbjct: 421 VPADLVSIDLKSSWEILGEITGNSVTEDLIDRIFSDFCIGK 461


>gi|190171314|gb|ACE63727.1| ThdF [Cronobacter sakazakii]
          Length = 439

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 148/442 (33%), Positives = 231/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                 P  +    +  K+D+       S         +S+ T EG+ 
Sbjct: 299 TTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVG 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|40063333|gb|AAR38151.1| tRNA modification GTPase TrmE [uncultured marine bacterium 578]
          Length = 449

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/449 (36%), Positives = 242/449 (53%), Gaps = 15/449 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           H+ ETI A++T    S I ++R+SGP    + + +   +    R A    F+      +D
Sbjct: 5   HKVETICALATAIGQSGIGVVRVSGPLSKAIGQKLLHIEL-KARHAYYGSFYDKGSNKID 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           KG+ I FP P S+TGED  EF  HGG++V+  +LE        R A PGEF++RAF NGK
Sbjct: 64  KGVSIFFPGPNSYTGEDVIEFQGHGGMSVLRKLLET-TTFFGARHAEPGEFTKRAFLNGK 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ DLI S +E     ++  ++GE S      +  LT +R F+EA +DFS+ E
Sbjct: 123 MDLVQAEAVQDLIQSSSEQSALSAVRSLTGEFSEKINHLLADLTSLRVFVEATIDFSD-E 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++    S EV   +  LKN +   +     G I+R+G  + I G  NAGKSSL NAL K+
Sbjct: 182 EIDFLESHEVSVKLQTLKNLLLEILESANQGAILRDGLYVAIAGKPNAGKSSLLNALTKQ 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             AIVTDI GTTRDVL   + ++G  + I DTAG+  +++I+E+EGI+R   E+ NAD++
Sbjct: 242 PSAIVTDIAGTTRDVLKETIHIDGMPLHIIDTAGLHNSNNIIEQEGIRRAHTEINNADVV 301

Query: 303 LLLKEINSKKEI-----SFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGL 351
           LL+ +   K           KN   I I  K DL     E  +         S+  G+G+
Sbjct: 302 LLVYDAKDKLADFSILPEAVKNKPIICIRNKIDLLKAKAEIKEVKHQTEVSLSAKNGDGI 361

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           + L   +      K         + KRH+  +  T+ Y+  A    +    +++AE+LR 
Sbjct: 362 DLLRQALSEAAGYK-PDGEGVFLARKRHILSIELTLNYVNSAIEQLEGGASELVAEDLRQ 420

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A +SLG ITG    + LL  IFS FCIGK
Sbjct: 421 AGMSLGTITGEFSSDDLLGEIFSSFCIGK 449


>gi|190171194|gb|ACE63667.1| ThdF [Enterobacter cowanii]
          Length = 439

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 149/442 (33%), Positives = 234/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P PR A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGLKARDVAQAVLG-KLPKPRYADYLAFQDADGSALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  + +D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNNVISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P  +    +  K+D+       S         +S+ T EG++
Sbjct: 299 TTDAVDPADIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNNHSLVRLSARTNEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L   +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRQHLKQSMGFD-TSMEGGFLARRRHLQALEMAAEHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  SL +ITG    + LL  IF
Sbjct: 418 AQQSLSEITGEFTSDDLLGRIF 439


>gi|297205279|ref|ZP_06922675.1| tRNA modification GTPase TrmE [Lactobacillus jensenii JV-V16]
 gi|297149857|gb|EFH30154.1| tRNA modification GTPase TrmE [Lactobacillus jensenii JV-V16]
          Length = 483

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 146/459 (31%), Positives = 235/459 (51%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+RLSG    ++   + K K    + AS    +G       
Sbjct: 28  TEFDTIAAISTPIGEGGISIVRLSGEDAVKIANKLFKGKD-LSKVASHTINYGHIIDPET 86

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ ++ V  +P++FT ED  E + HGGI V N IL+ L K    R+A  GEF++RA
Sbjct: 87  SKVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLK-HGARMAEAGEFTKRA 145

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R+++M  + G L         ++    + +E ++D
Sbjct: 146 FVNGRIDLTQAESVMDIVRAKTDKARQVAMNQLEGGLLDKIRNMRQEILDTLANVEVNID 205

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D    ++ ++      +   I+  +     G+I+RNG    I+G  N GKSSL N
Sbjct: 206 YPEY-DADQVTATQMQETSKKVIEAINRLLKTANQGKIMRNGLATAIVGRPNVGKSSLLN 264

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + + G  +K+ DTAGI  T+D VEK G++R+   +E
Sbjct: 265 YLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTEDKVEKIGVERSKKAIE 324

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLI 343
            ADL+LLL   +       +K I + KN   I +  K+DL     +E           + 
Sbjct: 325 QADLVLLLLNASEALTTEDEKLIDYTKNKKRIVVLNKADLGIKLNKEDLKVQTQASIVVT 384

Query: 344 SSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    E L EL   I  +  +         + +++R    L +    L ++    + D  
Sbjct: 385 SILKEENLNELEEAISKLFFSGIHNSNDEVLVTNQRQAGLLEKAKDQLTDVVDAVDNDVP 444

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LDI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 445 LDIAQIDFTGAWDTLGEITGDSAPDELITQLFSQFCLGK 483


>gi|326571730|gb|EGE21743.1| tRNA modification GTPase TrmE [Moraxella catarrhalis BC8]
 gi|326574355|gb|EGE24298.1| tRNA modification GTPase TrmE [Moraxella catarrhalis CO72]
          Length = 466

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/461 (35%), Positives = 256/461 (55%), Gaps = 31/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG   +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   + N +  + + I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307

Query: 307 EINSKKEISFPKN----------------IDFIFIGTKSDLY----------STYTEEYD 340
           ++ ++ +     +                   I +  KSDL            T +    
Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLISKPVLQVSCETKSAPKL 367

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKD 399
             +S  TGEGL+ELI  +   +   F     S+ +  RHL  L++   Y +E        
Sbjct: 368 VYVSCETGEGLDELIEILTQKV--GFHPPENSLIARTRHLDALNRAKGYAIEAYEQLTIY 425

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +++AE+LR +  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 426 HAGELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466


>gi|323527917|ref|YP_004230070.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1001]
 gi|323384919|gb|ADX57010.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1001]
          Length = 464

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 151/465 (32%), Positives = 239/465 (51%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G +           +   PR AS   F   
Sbjct: 2   LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAPPLMQALTGQTLAPRHASYVPFLDG 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGEF
Sbjct: 62  SGNALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLLLQRCIDAGRAFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++++  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSRDIHALVEEVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  ++S +++ + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPE-EEIDFLEAADARGKLARIRERLASVLTEARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R+T+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY------- 339
            E+E AD++L L +        +      FP  +  + +  K+DL     E         
Sbjct: 301 SEIERADVVLHLLDARTGMTAEDETIARRFPAGVPVVRVLNKTDLVGLPPETRALDADFD 360

Query: 340 --DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
             +  +S+  G+G+  L  ++  I   +         + +RHL  L     +L  A+ + 
Sbjct: 361 LSEVRLSAKQGDGVGLLRGELLRIAGWQAG-AESVYLARERHLIALRAAEEHLATAAAHA 419

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464


>gi|113866134|ref|YP_724623.1| tRNA modification GTPase TrmE [Ralstonia eutropha H16]
 gi|113524910|emb|CAJ91255.1| Predicted GTPase [Ralstonia eutropha H16]
          Length = 488

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 158/478 (33%), Positives = 244/478 (51%), Gaps = 41/478 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   +  I A++T      I ++R+SGP    V   +C  +   PR A+   F    G++
Sbjct: 14  MTAPQVPIAAIATAPGRGGIGVVRVSGPDVGPVMRSVCG-QALKPRHATYLPFLDGHGKV 72

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRA 117
           +D GL + FP+P S+TGE+  E   HGG  V+  +L    +      LRLA PGEF+RRA
Sbjct: 73  IDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGDGIGLRLAEPGEFTRRA 132

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K+DL +AE++ADLI + TE   R +   M GE S+   Q +DK+ H+R  +EA LD
Sbjct: 133 FLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSNAIRQLVDKVIHLRMLVEATLD 192

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E E++      +    +  ++ ++S  ++Q + G ++R G  +V+ G  N GKSSL N
Sbjct: 193 FPE-EEIDFLEQSDARGQLATIRTELSGVLAQARQGALLREGLSVVLAGQPNVGKSSLLN 251

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEV 296
           ALA  ++AIVT I GTTRD +   + ++G  + I DTAG+RE   D VE+ GI+RT+  +
Sbjct: 252 ALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLREHAADEVERIGIERTWDAI 311

Query: 297 ENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSD----------- 330
             AD++L L +               I+ +     P     + I  K D           
Sbjct: 312 RRADIVLHLVDATDYLRHGLSETDDAIDDQLSGQLPPGSPIVRIVNKIDKAPAVGDVVFG 371

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                 + +      +  IS+ TG G+E L  ++  ++  +      +  + +RHL  L 
Sbjct: 372 GNRPHVVAANGPNPTEIWISARTGAGIELLRRELLRLVGWQSGN-EGNFLARERHLTALR 430

Query: 385 QTVRYLEMASLNE--KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +L++A+     +   LD+ AE LRLA   L  ITG    + LL  IF++FCIGK
Sbjct: 431 NAQSHLDIAAEQAEHQAQALDLFAEELRLAQDCLNSITGEFTSDDLLGTIFTRFCIGK 488


>gi|227893842|ref|ZP_04011647.1| tRNA modification GTP-binding protein TrmE [Lactobacillus
           ultunensis DSM 16047]
 gi|227864331|gb|EEJ71752.1| tRNA modification GTP-binding protein TrmE [Lactobacillus
           ultunensis DSM 16047]
          Length = 461

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 140/459 (30%), Positives = 235/459 (51%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+R+SG    ++   + K      +  +    +G       
Sbjct: 6   TEFDTIAAISTPIGEGGISIVRMSGEDAVKIANKVFKGAD-LSKVPTHTIHYGHIIDPHT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+ +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L      R+A PGEF++RA
Sbjct: 65  GKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQ-LLLSNGARMAEPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R++++  ++G L         ++    + +E ++D
Sbjct: 124 FVNGRIDLTQAESVMDIVRAKTDKARQVAVHQLAGGLLHKIRALRQEILDTLANVEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D    ++K++ +    +   I   +   + G+I+RNG    I+G  N GKSSL N
Sbjct: 184 YPEY-DADQVTAKQMSDTATDVIKKIDRLLKTAQEGKILRNGLATAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  T+D VEK G++R+   +E
Sbjct: 243 YLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVERSKKALE 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLI 343
            ADL+LLL + +       K  I   K+   I I  KSDL            T       
Sbjct: 303 RADLVLLLIDASQDLTAEDKALIEETKSKKRIIILNKSDLGQKITVDQMKKLTGSDVIST 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEM-ASLNEKDCG 401
           S    + L++L   I  +     +     I  +++R    L++  + L+      +    
Sbjct: 363 SILQEKNLDDLEEMINKLFFAGIENSNDQIMVTNQRQASLLTKAKKELQDVVQAVDNGIP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 423 VDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|190171312|gb|ACE63726.1| ThdF [Cronobacter sakazakii]
          Length = 439

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 147/442 (33%), Positives = 232/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLE 352
           +                 P  +    +  K+D+        +        +S+ T EG++
Sbjct: 299 TTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGIIEVNGHSLIRLSARTNEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|326562321|gb|EGE12647.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 103P14B1]
 gi|326575525|gb|EGE25450.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 101P30B1]
          Length = 466

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/461 (35%), Positives = 257/461 (55%), Gaps = 31/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG + +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKNAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   + N +  + + I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIHQADVLMMVY 307

Query: 307 EINSKKEISFPKN----------------IDFIFIGTKSDLY----------STYTEEYD 340
           ++ ++ +     +                   I +  KSDL            T +    
Sbjct: 308 DVTTETDPLALADQLFCEDVTEDVGDIIRQKLILVANKSDLLVSKPVLQVSCETKSAPKL 367

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKD 399
             +S  TGEGL+ELI  +   +   F     S+ +  RHL  L++   Y +E        
Sbjct: 368 VYVSCETGEGLDELIEILTQKV--GFHPPENSLIARTRHLDALNRAKGYAIEAYEQLTIY 425

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +++AE+LR +  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 426 HAGELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466


>gi|190171332|gb|ACE63736.1| ThdF [Cronobacter sakazakii]
          Length = 439

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 148/442 (33%), Positives = 232/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   +G  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDANGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P LR+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                 P  +    +  K+D+       S         +S+ T EG++
Sbjct: 299 TTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|222099393|ref|YP_002533961.1| tRNA modification GTPase trmE [Thermotoga neapolitana DSM 4359]
 gi|221571783|gb|ACM22595.1| tRNA modification GTPase trmE [Thermotoga neapolitana DSM 4359]
          Length = 455

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 154/454 (33%), Positives = 251/454 (55%), Gaps = 24/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDKG 64
           +TI AV+T     AI+I+RLSGP  + +     K +    PRKA   +    +G  +D+ 
Sbjct: 7   DTIVAVATPPGKGAIAILRLSGPESWDIVRKHFKTRSNIVPRKAIHGWIR-ENGEDIDEV 65

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I + SP S+TGED  E   HGG  VV  +L+ +      R+A PGEF++RAF NGK+D
Sbjct: 66  VVIFYRSPRSYTGEDMVEVMCHGGPFVVKKLLD-VFLSAGARMAEPGEFTKRAFLNGKMD 124

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE++ DLI +++E   +LS++ + G L        ++L ++ + I  +LD+ ++ + 
Sbjct: 125 LTSAEAVRDLIEAKSEASLKLSLKNLKGGLRQFVETLREELINVLAEIRVELDYPDDVET 184

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                + V   I  +   +   + +   G ++  G ++VI+G  N GKS+L N L K+D 
Sbjct: 185 D---VESVKTKIESIHERLKEELKKADAGIMLNRGLRMVIVGKPNVGKSTLLNRLLKEDR 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIVTDIPGTTRDV++ ++ ++G L ++ DTAG+R ET D+VE+ GI+RTF E+E AD++L
Sbjct: 242 AIVTDIPGTTRDVISEEIVIKGILFRVVDTAGVRSETRDLVERLGIERTFQEIEKADIVL 301

Query: 304 LLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE----------YDHLISSFT 347
            + + +S  +      +   K+  ++ +  K D+     EE          +   IS+  
Sbjct: 302 FVLDASSPLDDEDRLILERIKHKRYLVVINKVDIVERIDEEELKRKLGTDRHIVKISALK 361

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIA 406
           GEGLE+L   +       F+K   S+ ++ R    L    + LE A  + K+   +D+++
Sbjct: 362 GEGLEKLEEAVYRETQEIFEKGSSSLITNLRQKQLLENVKKSLESAIESLKNKTPIDLVS 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  A   L ++TG    E LLD IFS FC+GK
Sbjct: 422 IDLERALHVLDEVTGRSFREDLLDAIFSTFCVGK 455


>gi|190171296|gb|ACE63718.1| ThdF [Cronobacter sakazakii]
 gi|190171316|gb|ACE63728.1| ThdF [Cronobacter sakazakii]
 gi|190171318|gb|ACE63729.1| ThdF [Cronobacter sakazakii]
 gi|190171328|gb|ACE63734.1| ThdF [Cronobacter sakazakii]
 gi|190171344|gb|ACE63742.1| ThdF [Cronobacter sakazakii]
          Length = 439

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 147/442 (33%), Positives = 231/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +  +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLSGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                 P  +    +  K+D+       S         +S+ T EG++
Sbjct: 299 TTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|326561737|gb|EGE12072.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 7169]
          Length = 466

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/461 (35%), Positives = 256/461 (55%), Gaps = 31/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG   +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   + N +  + + I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307

Query: 307 EINSKKEISFPKN----------------IDFIFIGTKSDLY----------STYTEEYD 340
           ++ ++ +     +                   I +  KSDL            T +    
Sbjct: 308 DLTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLVSKPVLQVSCETKSVPKL 367

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKD 399
             +S  TGEGL+ELI  +   +   F     S+ +  RHL  L++   Y +E        
Sbjct: 368 VYVSCETGEGLDELIEILTQKV--GFHPPENSLIARTRHLDALNRAKGYAIEAYEQLTIY 425

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +++AE+LR +  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 426 HAGELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466


>gi|207727483|ref|YP_002255877.1| trna modification gtpase trme protein [Ralstonia solanacearum
           MolK2]
 gi|206590720|emb|CAQ56332.1| trna modification gtpase trme protein [Ralstonia solanacearum
           MolK2]
          Length = 491

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 153/460 (33%), Positives = 245/460 (53%), Gaps = 29/460 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
            I A++T      I ++R+SGP    V + +C +    PR+A+   F G DG  +D+G+ 
Sbjct: 35  PIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGR-LLQPRQAAYLPFLGADGHAIDRGIA 93

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEFSRRAFENGKI 123
           + FP+P S+TGED  E   HGG  V+  +L       +   +R+A PGEF+RRAF N K+
Sbjct: 94  LWFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGREIGVRVAEPGEFTRRAFLNDKM 153

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + TE   R +   + G  S      ++++ H+R  +EA LDF E E+
Sbjct: 154 DLAQAEAVADLIEASTEAAARSAARSLDGAFSQAVHALVERVIHLRMLVEATLDFPE-EE 212

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +    + +    +  ++  +   ++Q + G ++R G  +V+ G  N GKSSL NALA  +
Sbjct: 213 IDFLEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAE 272

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT+  +  AD++L
Sbjct: 273 LAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVL 332

Query: 304 LLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHL 342
            L +               I+++     P  +  + +  K DL    T      +  +  
Sbjct: 333 HLLDAADYRAHGLSAEDAAIDARIAGHVPAGVPTLRVINKIDLSGAATPARVDAQPPEVW 392

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDC 400
           +S+  G G+E L   +  I   +         + +RHL  L     +L +A+   +++  
Sbjct: 393 LSARDGSGIELLRAVLLEIAGWQ-GGGEGLYLARERHLSALRTAKDHLAIAADHADQRAQ 451

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 452 SLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 491


>gi|251800245|ref|YP_003014976.1| tRNA modification GTPase TrmE [Paenibacillus sp. JDR-2]
 gi|247547871|gb|ACT04890.1| tRNA modification GTPase TrmE [Paenibacillus sp. JDR-2]
          Length = 459

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 238/458 (51%), Gaps = 23/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
            +TI A+ST      I+IIR+SGP   +    I + +      A+    +G      +G 
Sbjct: 3   HDTIAAISTAVGEGGIAIIRVSGPDAIEGTARIFRSRTDLRDAATHTVQYGHIIDPKNGE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +++ ++ V   P SFT ED  E + HGG+  V  +L+++     +RLA PGEF++RAF 
Sbjct: 63  QVEEVIVTVMRGPRSFTAEDVVEINAHGGVVAVKKVLDQVLLQDGMRLAEPGEFTKRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL++AE++ DLI S+++    ++ +   G LS         +  + + IE ++D+ 
Sbjct: 123 NGRIDLMQAEAVIDLIRSKSDRAFSVARKQAEGTLSKRIKALRQTVIELLAHIEVNIDYP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  DV++ +S  +         +I   +     G+I+R G    I+G  N GKSSL N L
Sbjct: 183 EH-DVEDLTSAYIREQSGSALEEIGKLLKTANEGKILREGIMTAIVGRPNVGKSSLLNML 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A+++ AIVTDIPGTTRDV+   + L    +++ DTAGIRET+D+VE+ G++R+   +E A
Sbjct: 242 AQENKAIVTDIPGTTRDVIEEYVTLNHIPLRLLDTAGIRETNDVVERIGVERSHNALEEA 301

Query: 300 DLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDHLIS 344
           DLIL +         + +  +   K+   I I  KSDL S            EE    +S
Sbjct: 302 DLILFVLNNNEPIHEDDRALLEKVKDRQLILIINKSDLESKLEMAEIEALIDEERIVRMS 361

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGL 402
               +GL+ L   I  +    +      +  S+ RH+  L +  + L  A   +     +
Sbjct: 362 VREEDGLDRLEKAISKLFFEGQLDSGDLTYVSNVRHISLLKRAQQSLIDAIDASNAGIPI 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+I  ++R A  SLG+I G    + L+D IFS+FC+GK
Sbjct: 422 DLIQIDVRSAWESLGEILGDEVGDSLIDQIFSQFCLGK 459


>gi|190171256|gb|ACE63698.1| ThdF [Pantoea sp. E147]
          Length = 439

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 148/442 (33%), Positives = 234/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG    +V   +   K P PR A    F   DGR+LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRVSGAQAAEVARQLLG-KLPKPRYADYLPFTDSDGRVLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSAVNSLQGVFSTRINHLVEALTHLRIYVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
             +   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA +D AIVTD
Sbjct: 179 GRIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKEI-----------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                 P  +    +  K+D+       +         +S+ T  G++
Sbjct: 299 TTDATEAAAIWPDFVSRLPPELPITVVRNKADVTGESLGLTEVNGHSLIRLSARTSAGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
           EL + +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 ELRDHLKQSM-GFAGDMEGGFLARRRHLQALELAATHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|319789803|ref|YP_004151436.1| tRNA modification GTPase TrmE [Thermovibrio ammonificans HB-1]
 gi|317114305|gb|ADU96795.1| tRNA modification GTPase TrmE [Thermovibrio ammonificans HB-1]
          Length = 469

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 151/463 (32%), Positives = 252/463 (54%), Gaps = 29/463 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLDG 58
           ++TI A+ST     AI I+R+SG     +   + + K          RK          G
Sbjct: 9   EDTIAAISTPIGKGAIGIVRISGKDALTILRRLFRTKGGKEKLEFEDRKMYYGLVVDRFG 68

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L +   +P++FTGED  E HVHGGI VV  +L E+      RLA PGEF+ RAF
Sbjct: 69  EPIDEVLAVYMKAPKTFTGEDVVELHVHGGIVVVRKVLREVL-ACGARLAKPGEFTMRAF 127

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            +GKIDL++AE++  LI + +E+  ++++E + G+LS    +   +L  +++ IEA +DF
Sbjct: 128 IHGKIDLVQAEAINQLIEATSELSAKVALEQLEGKLSKRIKELQTRLLELKAVIEAAVDF 187

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            + E+V+   S  +   +  L +++   I   + G  IR G K+ I+G  N GKSSL NA
Sbjct: 188 PD-EEVEIIESHRIKEHLRGLIDELEKLIQTYREGRYIREGIKVAIVGRPNVGKSSLLNA 246

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           + +++ AIVT+IPGTTRDV+   +  +G  V++ DTAGIRE+ D+VE+ GI+++   ++ 
Sbjct: 247 ILQEERAIVTEIPGTTRDVIEETVTFKGLPVRLLDTAGIRESADVVERIGIEKSLKSLKE 306

Query: 299 ADLILLLKEIN---SKKEISFP----KNIDFIFIGTKSDLYSTYTEE---------YDHL 342
           AD++L + + +   +++++       +  + I +  K+DL    T E            +
Sbjct: 307 ADVVLFVLDGSEGLTEEDLKIASLLNRKDNVIAVINKADLALKLTCEQLKETLGVGRCVI 366

Query: 343 ISSFTGEGLEELINKI---KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNE 397
           IS+  G+G++EL + +     +           + + +RH   L +    LE A  SLN 
Sbjct: 367 ISAKEGKGIDELASAMMELLLLEPESLLGGDEVLITSERHRELLERAKTSLEKALNSLNL 426

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                + ++ ++  A  +LG+I G V  E + DIIFS+FCIGK
Sbjct: 427 GYESPEFLSMDIDDALKALGEIVGEVTTEDMFDIIFSRFCIGK 469


>gi|315039281|ref|YP_004032849.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1112]
 gi|325957755|ref|YP_004293167.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus 30SC]
 gi|312277414|gb|ADQ60054.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1112]
 gi|325334320|gb|ADZ08228.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus 30SC]
 gi|327184388|gb|AEA32835.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1118]
          Length = 461

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 141/459 (30%), Positives = 236/459 (51%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+R+SG    ++   + K      +  +    +G       
Sbjct: 6   TEFDTIAAISTPIGEGGISIVRMSGEDAVKIANEVFKGAN-LAKVPTHTIHYGHIIDPDT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RA
Sbjct: 65  GETIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNRILQ-LLLSHGARMADPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R+++ + + G L         ++    + +E ++D
Sbjct: 124 FVNGRIDLTQAESVMDIVRAKTDKARKVAEKQLEGGLLHKIRAMRQEILDTLANVEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D    ++K++ +    +   I   +S  + G+I+RNG    I+G  N GKSSL N
Sbjct: 184 YPEY-DADTVTAKQMADTANSVIKKIDRLLSTAQEGKILRNGLATAIVGQPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  TDD VEK G++R+   +E
Sbjct: 243 YLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVERSKKALE 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-------- 343
            ADL+LLL + +       K  I   K+   I I  KSDL    T +    +        
Sbjct: 303 RADLVLLLIDASQELTDEDKALIDETKDKKRIIILNKSDLGQKLTVDQMKQMTGSEVIST 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDCG 401
           S    + L++L   I  +  +  +      + +++R    L +  + L+           
Sbjct: 363 SILKEKNLDQLEEVISKLFFSGIENSNDQVMVTNQRQTSLLQKAKKELQDVVQAVNDGVP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 423 VDIAQIDFTGAWDTLGEITGESAPDELITTLFSQFCLGK 461


>gi|94312541|ref|YP_585751.1| tRNA modification GTPase TrmE [Cupriavidus metallidurans CH34]
 gi|205415800|sp|Q1LH94|MNME_RALME RecName: Full=tRNA modification GTPase mnmE
 gi|93356393|gb|ABF10482.1| GTPase [Cupriavidus metallidurans CH34]
          Length = 475

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 156/478 (32%), Positives = 243/478 (50%), Gaps = 41/478 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   +  I A++T      I ++R+SGP    V   +C +    PR A+   F    G +
Sbjct: 1   MTVSQIPIAAIATAPGRGGIGVVRVSGPDVGAVMRAVCGRAL-QPRHATYLPFLDARGNV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEFSRRA 117
           +D GL + FP+P S+TGE+  E   HGG  V+  +L       K   LR+A PGEF+RRA
Sbjct: 60  IDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLSRCLEAGKDIGLRVAEPGEFTRRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K+DL +AE++ADLI + TE   R +   M GE S      ++K+ H+R  +EA LD
Sbjct: 120 FLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSKAIHALVEKVIHLRMLVEATLD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E E++    +      +  ++ D++  + Q + G ++R G  +V+ G  N GKSSL N
Sbjct: 180 FPE-EEIDFLEASNARGQLTRIREDLAGVLKQARQGSLLREGLSVVLAGQPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEV 296
           ALA  D+AIVT I GTTRD +   + ++G  + I DTAG+R +  D VE+ GI+RT+  +
Sbjct: 239 ALAGSDLAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLRDDAADEVERIGIERTWEAI 298

Query: 297 ENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTY------ 335
            +AD++L L +               I+ +     P     + +  K DL  +       
Sbjct: 299 RHADIVLHLIDAADYIEHGISETDDHIDDRLSGQLPPGSPIVRVINKIDLAPSVGAMGFG 358

Query: 336 -----------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                          +  IS+ TG G++ + +++  ++  +      +  + +RHL  L 
Sbjct: 359 GNRPHVVAANGPNPTEIWISARTGAGIDLMRSELLRLIGWQSGN-EGAFLARERHLIALR 417

Query: 385 QTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +LE+  AS ++    LD+ AE LRLA   L  ITG    + LL  IF++FCIGK
Sbjct: 418 NAESHLELAEASASQHAQALDLFAEELRLAQDHLNSITGEFTSDDLLGTIFTRFCIGK 475


>gi|241665032|ref|YP_002983392.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12D]
 gi|240867059|gb|ACS64720.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12D]
          Length = 481

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 151/460 (32%), Positives = 240/460 (52%), Gaps = 29/460 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
            I A++T      I ++R+SGP    V + +C +    PR+A+   F   +G  +D+G+ 
Sbjct: 25  PIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRVL-TPRQATYLPFLDAEGNAIDRGIA 83

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEFSRRAFENGKI 123
           + FP+P S+TGED  E   HGG  V+  +L+      +   LR+A PGEF+RRAF N K+
Sbjct: 84  LWFPAPHSYTGEDVLELQGHGGPVVMQLLLQRCLTAGREIGLRVAEPGEFTRRAFLNDKM 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + TE   R +   + G  S      ++++ H+R  +EA LDF E E+
Sbjct: 144 DLAQAEAVADLIEASTEAAARSAARSLEGAFSQAVHALVERVIHLRMLVEATLDFPE-EE 202

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +    + +    +  ++  +   ++Q + G ++R G  +V+ G  N GKSSL NALA  +
Sbjct: 203 IDFLEASDARGQLAGIRTAVDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAE 262

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT+  +  AD++L
Sbjct: 263 LAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVL 322

Query: 304 LLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTY------TEEYDHL 342
            L +               I+++     P  +  + +  K DL           E  +  
Sbjct: 323 HLLDATDYRAKGLSPEDTAIDARIAEHVPAGVPTLRVINKIDLSGVAIPGRVDAEPPEVW 382

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDC 400
           +S+  G G+E L   +  I   +         + +RHL  L     +L        ++  
Sbjct: 383 LSARDGLGVELLRAALLEIAGWQ-GGGEGLYLARERHLAALRTAREHLATAAEHAAQQAQ 441

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 442 SLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 481


>gi|53802851|ref|YP_115425.1| tRNA modification GTPase TrmE [Methylococcus capsulatus str. Bath]
 gi|81823572|sp|Q602M5|MNME_METCA RecName: Full=tRNA modification GTPase mnmE
 gi|53756612|gb|AAU90903.1| tRNA modification GTPase TrmE [Methylococcus capsulatus str. Bath]
          Length = 448

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 165/449 (36%), Positives = 250/449 (55%), Gaps = 15/449 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            +++TI A++T      + I+R+SG +   V + +  +  P PR A  R+F   DGR +D
Sbjct: 4   PDRDTITAIATPPGKGGVGIVRISGSNLGPVLDALLGR-PPRPRYAEFRHFLDADGRAID 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G+ + FP+P SFTGE+  E H HGG  V++ +L    ++   RLA PGEFS RA+ NGK
Sbjct: 63  SGIALYFPAPRSFTGENVLELHGHGGPVVLDLLLRRTLQL-GCRLARPGEFSERAYLNGK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI S TE   R +   + GE S+      + L  +R+++EA +DFS+ E
Sbjct: 122 LDLAQAEAIADLIDSSTEESARSAQRSLQGEFSAHIHHLQECLVRLRTYVEAAIDFSD-E 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+       + ++I  L +++ +  ++   G ++R G   VI G  N GKSSL NALA +
Sbjct: 181 DIDLLDDATLGHEITGLLDELDTIDTKAHQGALLREGLTTVIAGRPNVGKSSLLNALAGR 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D+AIVT+IPGTTRD+L   L + G  + I DTAG+R+++D +E+EGI+R    + NAD I
Sbjct: 241 DLAIVTEIPGTTRDLLRESLQVGGLPLHIVDTAGLRDSEDPIEREGIRRARDALANADCI 300

Query: 303 LLLKEINSKKE-----ISFPKNIDFIFIGTKSDLYSTYT------EEYDHLISSFTGEGL 351
           LL+ +    +         P+ I  I I  K DL           E     +S+ TGEG+
Sbjct: 301 LLVCDARHTEAGDALPADLPETIPLIRIFNKIDLTGAPASLTVERETTVIHLSARTGEGV 360

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           + L  +I      K K       + +RHL  + +    +  A L       +++AE LR 
Sbjct: 361 DLLRQEIIRRAGYK-KGTEGVFSARRRHLDAIRRARAAVANARLYLHTKTAELLAEELRA 419

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG    E LL+ IFS FC+GK
Sbjct: 420 AQKALGEITGEFTNEDLLNRIFSSFCLGK 448


>gi|296157619|ref|ZP_06840454.1| tRNA modification GTPase TrmE [Burkholderia sp. Ch1-1]
 gi|295892391|gb|EFG72174.1| tRNA modification GTPase TrmE [Burkholderia sp. Ch1-1]
          Length = 464

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 150/465 (32%), Positives = 239/465 (51%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G +  Q        +    R AS   F   
Sbjct: 2   LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTGQTLAARHASYVPFLDA 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
           +G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGEF
Sbjct: 62  NGSALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +E
Sbjct: 122 TRRAFLNDKLDLTQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEDVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  ++  +S+ + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPE-EEIDFLEAADARGKLARIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R+T+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDL---------YSTYTE 337
            E+E AD++L L +  +   +        FP  +  + +  K+DL              +
Sbjct: 301 NEIERADVVLHLLDARTGMTVEDEAIAGRFPAGVPVVRVLNKTDLTGLAPATRALDADPD 360

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
             +  +S+  G+G+  L  ++  I   +         + +RHL  L     +L  A+ + 
Sbjct: 361 LSEVRLSAKQGDGVALLREELLRIAGWQAG-AESVYLARERHLIALRAAEEHLATAAAHA 419

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464


>gi|317472412|ref|ZP_07931737.1| tRNA modification GTPase TrmE [Anaerostipes sp. 3_2_56FAA]
 gi|316900132|gb|EFV22121.1| tRNA modification GTPase TrmE [Anaerostipes sp. 3_2_56FAA]
          Length = 457

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 148/456 (32%), Positives = 233/456 (51%), Gaps = 23/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL---DGRI 60
           +TI A++T    S I IIR+SGP    +   + + K  K   + A+    +G    DG+ 
Sbjct: 4   DTIAAIATPLSSSGIGIIRISGPEAIDIASEVFRPKREKDIKKAATYTAHYGHAVKDGKD 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ +L++   P S+T ED AE + HGG+ V+  IL  + +    R A PGEF++RAF N
Sbjct: 64  IDECILLIMKGPHSYTAEDVAEINCHGGVVVMKKILSCIIEA-GARPAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL  AE++ DLI S+ E     S++ + G LS        ++ H  +FIE+ LD  E
Sbjct: 123 GRIDLSRAEAVMDLIHSKNEFAMETSLKQLKGSLSEKIRSLRKEIVHSVAFIESALDDPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              V  FS +++   +   ++DI  ++     G I++ G    I+G  NAGKSS+ N L 
Sbjct: 183 HYSVDGFS-EQLKVQVEHARDDIQKYLDSSDNGRILKEGIHTAIVGKPNAGKSSILNVLL 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            K+ AIVTDI GTTRD L   + + G  + + DTAGIR+TDD+VEK G+ +    V  AD
Sbjct: 242 GKERAIVTDIAGTTRDTLEESIQINGIPLNVIDTAGIRDTDDVVEKIGVDKARDSVIKAD 301

Query: 301 LILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTE--------EYDHLISSF 346
           L+L + + +       ++ +        I +  KSDL +  +E        +    +S+ 
Sbjct: 302 LVLYVVDTSVPLTKEDEEIMKLLNGKQVIVLLNKSDLETKVSESEFLDRGFQNIVPVSAK 361

Query: 347 TGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDI 404
           +  GLE+L  +I  +  N           ++ RH   L+     L++     E     D 
Sbjct: 362 SLYGLEDLYERINDLFFNGRVSFNDEVYITNMRHKKALANAKDSLDLVLKSIEDRMPEDF 421

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +L  A   LG I G    E L++ IF++FC+GK
Sbjct: 422 FSIDLMDAYEELGYIIGESVGEDLVNEIFAEFCMGK 457


>gi|300913770|ref|ZP_07131087.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X561]
 gi|307725544|ref|YP_003905295.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X513]
 gi|300890455|gb|EFK85600.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X561]
 gi|307582605|gb|ADN56004.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X513]
          Length = 462

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 161/464 (34%), Positives = 243/464 (52%), Gaps = 26/464 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGL 56
           M    +TI A+ST    + I I+RLSG    ++   I K  K       +  +L Y   +
Sbjct: 1   MKMVFDTIAAISTFPGEAGIGIVRLSGDDALEIISKIFKPYKSKDIKKVKSHTLHYGHIV 60

Query: 57  DGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           D     + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF
Sbjct: 61  DPETEEVYDEVLVSIMEKPNTYTREDIVEINCHGGIVVTSKILELVLK-QGARLAEPGEF 119

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG+IDL +AE++ D+I ++T +  R + + + G + S   +  DK+  +   + 
Sbjct: 120 TKRAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLLVHLL 179

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF E EDV+    KE+L     +  DI   I+  + G IIR G K  I+G  N GKS
Sbjct: 180 ALIDFPE-EDVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKS 238

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++ 
Sbjct: 239 SLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVTKSK 298

Query: 294 LEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--------- 338
             +  ADLIL + + + +      +        + IF+  K DL     E+         
Sbjct: 299 EVLAEADLILFVLDASRELTKEDYEIFDILTGKNIIFVLNKIDLPKKIDEKELKDLTKDG 358

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEM-ASLN 396
               +S+    GLEEL N I +++      L    I  + RH   L    +Y+E      
Sbjct: 359 IIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALINAKKYMESCVEAI 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E     D+I  +L  A   LGKITG    E L++ IF +FC+GK
Sbjct: 419 EGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 462


>gi|194291282|ref|YP_002007189.1| tRNA modification gtpase trme [Cupriavidus taiwanensis LMG 19424]
 gi|193225117|emb|CAQ71128.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Cupriavidus taiwanensis LMG 19424]
          Length = 475

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 159/478 (33%), Positives = 246/478 (51%), Gaps = 41/478 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   +  I A++T      I ++R+SGP    V   +C  +   PR A+   F   +G++
Sbjct: 1   MTAPQLPIAAIATAPGRGGIGVVRVSGPDVGPVMRAVCG-QALKPRHATYLPFLDGNGKV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRA 117
           +D GL + FP+P S+TGE+  E   HGG  V+  +L    +      LRLA PGEF+RRA
Sbjct: 60  IDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGDGIGLRLAEPGEFTRRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K+DL +AE++ADLI + TE   R +   M GE S+   Q +DK+ H+R  +EA LD
Sbjct: 120 FLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSNAIRQLVDKVIHLRMLVEATLD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E E++      +    +  +++++ + ++Q + G ++R G  +V+ G  N GKSSL N
Sbjct: 180 FPE-EEIDFLEQSDARGQLATIRDELGAVLAQARQGALLREGLSVVLAGQPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDIVEKEGIKRTFLEV 296
           ALA  ++AIVT I GTTRD +   + ++G  + I DTAG+RE   D VE+ GI+RT+  +
Sbjct: 239 ALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLREEAADEVERIGIERTWDAI 298

Query: 297 ENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSD----------- 330
             AD++L L +               I+ K     P     + I  K D           
Sbjct: 299 RRADIVLHLVDATDYLRHGLSEIDDAIDDKLSGQLPPGAPIVRIVNKIDKAPAVGEMMFG 358

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                 + +      +  IS+ TG G+E L  ++  ++  +      +  + +RHL  L 
Sbjct: 359 GNRPHVVAANGPNPTEIWISARTGAGIELLRRELLRLVGWQSGN-EGTFLARERHLTALR 417

Query: 385 QTVRYLEMASL--NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           Q    L++A+     +   LD+ AE LRLA   L  ITG    + LL  IF++FCIGK
Sbjct: 418 QAQSRLDVAAEQSQRQAQALDLFAEELRLAQEHLNSITGEFTSDDLLGTIFTRFCIGK 475


>gi|241668179|ref|ZP_04755757.1| tRNA modification GTPase TrmE [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876714|ref|ZP_05249424.1| tRNA modification GTPase trmE [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842735|gb|EET21149.1| tRNA modification GTPase trmE [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 450

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/454 (32%), Positives = 246/454 (54%), Gaps = 21/454 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + K+TI AV+T      I I+R+SG     + E + KK+   PR A+    +     I+D
Sbjct: 2   YTKDTIVAVATPQGNGGIGIVRISGSDALSIAEKLTKKRL-IPRYATFCNIYN-TNEIID 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++I F SP S+TGED  E   HG   ++N I++   +    R+AN GEF+ RAF N K
Sbjct: 60  HGIVIFFNSPNSYTGEDVVEIQAHGNPFILNLIIKATLE-YGARMANAGEFTERAFLNSK 118

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++AD+I++ +E   + + + + G+ S      ++KL ++R ++EA +DF E E
Sbjct: 119 LDLTQAEAVADIINASSETAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPE-E 177

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++     +++ N +  +   I    +  K G I+  G  ++++G  NAGKSSL NALA K
Sbjct: 178 EINFLEDQKIHNSLQDIYKTILDVKNSCKQGAILVEGITLILVGKPNAGKSSLLNALAGK 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR   +++ AD I
Sbjct: 238 ESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRSSDDIIESEGIKRAIKKIQEADQI 297

Query: 303 LLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEYDHL--ISSF 346
           L + +  +  ++ F              PK+ID  ++  K DL       +++   IS+ 
Sbjct: 298 LFVTDDYTNSQVKFSDIKDIIPEFYHQIPKDIDITYVHNKIDLLKEVPLNHNNHIYISAE 357

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
           +  G+++L + I + +     +      + +RH+  +     ++++A    +    +++A
Sbjct: 358 SNIGIDKLKDHILAKV-GYTTQNESIYTARERHVTAIDNAFDHIKLAKEQLELGNGELLA 416

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E L +    L  ITG    + LL  IFS FCIGK
Sbjct: 417 EELLIVQEHLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|295678212|ref|YP_003606736.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1002]
 gi|295438055|gb|ADG17225.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1002]
          Length = 464

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 152/465 (32%), Positives = 244/465 (52%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G +  Q        +    R AS   F   
Sbjct: 2   LTTDSDPIVAIATAPGRGGIGVVRISFGRAGAAAAQPLMQALTGQTLTARHASYVPFLDA 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGEF
Sbjct: 62  SGNPLDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++++  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEEVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  ++  +S+ + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPE-EEIDFLEAADARGKLARIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R+T+D VEK GI+RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIERTW 300

Query: 294 LEVENADLILLLKEINS-----KKEIS--FPKNIDFIFIGTKSDL---------YSTYTE 337
            E+E AD++L L +  +      + I+  FP+ +  + +  K+DL              E
Sbjct: 301 GEIERADVVLHLLDARAGMTTDDETIAGRFPRGVPVVRVLNKTDLTGLAPATQALDADLE 360

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
             +  +S+  G+G+  L +++  I   +         + +RHL  L     +L  A+ + 
Sbjct: 361 LSEVRLSAKQGDGVALLRDELLRIAGWQAG-AESVYLARERHLIALRAADEHLATAAAHA 419

Query: 398 KD--CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +     LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 EQNAQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464


>gi|197120417|ref|YP_002140844.1| tRNA modification GTPase TrmE [Geobacter bemidjiensis Bem]
 gi|197089777|gb|ACH41048.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34) modification GTPase
           [Geobacter bemidjiensis Bem]
          Length = 455

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 149/455 (32%), Positives = 237/455 (52%), Gaps = 22/455 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
           ++TI A+ST      I I+R+SGP+  Q+   I    K      S R+ +G       G 
Sbjct: 4   RDTIAAISTPVGEGGIGIVRISGPAALQIARSIF-NAKSNGGLKSHRFSYGEVVQPGTGD 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ + +   +P S+T ED  E   HGG  VV+ IL  L      R A PGEF++RAF 
Sbjct: 63  LVDEAMAVYMKAPNSYTREDVVEIQCHGGTLVVSRIL-ALVISQGSRPAEPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL++AE++ D+ISS T+    L+     G LS       + + +  +++EA +DF 
Sbjct: 122 NGRIDLVQAEAVMDVISSRTDASLALAQHQREGLLSQRISTVKEGIVYALAYVEALIDFP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV      +VL  +     ++ + I+    G ++R+G  +VI G  N GKSSL N L
Sbjct: 182 E-DDVNVAVETDVLGKVAPALAELDALIAGFDEGRVLRDGVSVVIAGKPNVGKSSLLNTL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K+  AIVT +PGTTRD++   +++ G  VK+ DTAGIRE++D VE+EG++ +   +  A
Sbjct: 241 LKEKRAIVTSVPGTTRDLIEEVVNINGLPVKLLDTAGIRESEDQVEQEGVRLSLDRIPKA 300

Query: 300 DLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTG 348
           DL+L + + +S         +    +   I +  KSDL       +        IS+ TG
Sbjct: 301 DLVLFVIDGSSAFGDEDAAILEAIGSKSCIVVRNKSDLPLAVDLPSGCSAPVVAISTHTG 360

Query: 349 EGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
           +G+ +L + I +   +        F   S  RH   L +    L+    N E    ++++
Sbjct: 361 DGVPQLRDAITNAFMHGHAIDGREFVALSKARHRDALLKARESLQSFVANLESGVNMELL 420

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +LR A  ++G++TG    + +LD IFS FCIGK
Sbjct: 421 PVDLRDALDAVGEVTGETTADDVLDRIFSSFCIGK 455


>gi|83747145|ref|ZP_00944188.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Ralstonia solanacearum UW551]
 gi|83726120|gb|EAP73255.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Ralstonia solanacearum UW551]
          Length = 491

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 152/460 (33%), Positives = 244/460 (53%), Gaps = 29/460 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
            I A++T      I ++R+SGP    V + +C +    PR+A+   F   DG  +D+G+ 
Sbjct: 35  PIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGR-LLQPRQAAYLPFLDADGHAIDRGIA 93

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEFSRRAFENGKI 123
           + FP+P S+TGED  E   HGG  V+  +L       +   +R+A PGEF+RRAF N K+
Sbjct: 94  LWFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGREIGVRVAEPGEFTRRAFLNDKM 153

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + TE   R +   + G  S      ++++ H+R  +EA LDF E E+
Sbjct: 154 DLAQAEAVADLIEASTEAAARSAARSLDGAFSQAVHALVERVIHLRMLVEATLDFPE-EE 212

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +    + +    +  ++  +   ++Q + G ++R G  +V+ G  N GKSSL NALA  +
Sbjct: 213 IDFLEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAE 272

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT+  +  AD++L
Sbjct: 273 LAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVL 332

Query: 304 LLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHL 342
            L +               I+++     P  +  + +  K DL    T      +  +  
Sbjct: 333 HLLDAADYRAHGLSAEDAAIDARIAGHVPAGVPTLRVINKIDLSGAATPARVDAQPPEVW 392

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDC 400
           +S+  G G+E L   +  I   +         + +RHL  L     +L +A+   +++  
Sbjct: 393 LSARDGSGIELLRAVLLEIAGWQ-GGGEGLYLARERHLSALRTAKDHLAIAADHADQRAQ 451

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 452 SLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 491


>gi|227878343|ref|ZP_03996300.1| tRNA modification GTP-binding protein TrmE [Lactobacillus crispatus
           JV-V01]
 gi|256843835|ref|ZP_05549322.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 125-2-CHN]
 gi|256849610|ref|ZP_05555042.1| thiophene and furan oxidation protein [Lactobacillus crispatus
           MV-1A-US]
 gi|262046278|ref|ZP_06019241.1| tRNA modification GTPase TrmE [Lactobacillus crispatus MV-3A-US]
 gi|312984011|ref|ZP_07791359.1| tRNA modification GTPase TrmE [Lactobacillus crispatus CTV-05]
 gi|227862079|gb|EEJ69641.1| tRNA modification GTP-binding protein TrmE [Lactobacillus crispatus
           JV-V01]
 gi|256613740|gb|EEU18942.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 125-2-CHN]
 gi|256713726|gb|EEU28715.1| thiophene and furan oxidation protein [Lactobacillus crispatus
           MV-1A-US]
 gi|260573608|gb|EEX30165.1| tRNA modification GTPase TrmE [Lactobacillus crispatus MV-3A-US]
 gi|310894513|gb|EFQ43587.1| tRNA modification GTPase TrmE [Lactobacillus crispatus CTV-05]
          Length = 461

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 141/459 (30%), Positives = 239/459 (52%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+R+SG    ++ + + K +    +  +    +G       
Sbjct: 6   TEFDTIAAISTPIGEGGISIVRMSGEDAIKIADEVFKGED-LSKVPTHTIHYGHIIDPDT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+ +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RA
Sbjct: 65  GKTIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQ-LLLSHGARMADPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R++++  ++G L         ++ +  + +E ++D
Sbjct: 124 FVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILNTLANVEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D    ++K++ +    + + I+  +   + G+I+RNG    I+G  N GKSSL N
Sbjct: 184 YPEY-DADTVTAKQMADTSRSVIDKINRLLKTAQEGKILRNGLATAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  T+D VEK G++R+   +E
Sbjct: 243 YLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVERSKKALE 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLI 343
            ADL+LLL + +       +  I   K+   I I  KSDL            T       
Sbjct: 303 RADLVLLLIDASQALTAEDQALIEATKDKKRIVILNKSDLGQKITTTEMEKLTGSDVIST 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    + L+ L   I  +     +     I  +++R    L +  + LE      E    
Sbjct: 363 SILKEQNLDALEELINKLFFAGIENSNDQIMVTNQRQASLLHKAKKELEDVIQAVEDGVP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 423 VDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|167748063|ref|ZP_02420190.1| hypothetical protein ANACAC_02807 [Anaerostipes caccae DSM 14662]
 gi|167652055|gb|EDR96184.1| hypothetical protein ANACAC_02807 [Anaerostipes caccae DSM 14662]
          Length = 472

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 147/456 (32%), Positives = 233/456 (51%), Gaps = 23/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL---DGRI 60
           +TI A++T    S I IIR+SGP    +   + + K  K   + A+    +G    DG+ 
Sbjct: 19  DTIAAIATPLSSSGIGIIRISGPEAIDIASEVFRPKREKDIKKAATYTAHYGHAVKDGKD 78

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ +L++   P S+T ED AE + HGG+ V+  IL  + +    R A PGEF++RAF N
Sbjct: 79  IDECILLIMKGPHSYTAEDVAEINCHGGVVVMKKILSCIIEA-GARPAEPGEFTKRAFLN 137

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL  AE++ DLI S+ E     S++ + G LS        ++ H  +FIE+ LD  E
Sbjct: 138 GRIDLSRAEAVMDLIHSKNEFAMETSLKQLKGSLSEKIRSLRKEIVHSVAFIESALDDPE 197

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              V  FS +++   +   ++DI  ++     G I++ G    I+G  NAGKSS+ N L 
Sbjct: 198 HYSVDGFS-EQLKVQVEHARDDIQKYLDSSDNGRILKEGIHTAIVGKPNAGKSSILNVLL 256

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRD L   + + G  + + DTAGIR+TDD+VEK G+ +    V  AD
Sbjct: 257 GEERAIVTDIAGTTRDTLEESIQINGIPLNVIDTAGIRDTDDVVEKIGVDKARDSVIKAD 316

Query: 301 LILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTE--------EYDHLISSF 346
           L+L + + +       ++ +        I +  KSDL +  +E        +    +S+ 
Sbjct: 317 LVLYVVDTSVPLTKEDEEIMKLLNGKQVIVLLNKSDLETKVSESEFLDRGFQNIVPVSAK 376

Query: 347 TGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDI 404
           +  GLE+L  +I  +  N           ++ RH   L+     L++     E     D 
Sbjct: 377 SLYGLEDLYERINDLFFNGRVSFNDEVYITNMRHKKALANAKDSLDLVLKSIEDRMPEDF 436

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +L  A   LG I G    E L++ IF++FC+GK
Sbjct: 437 FSIDLMDAYEELGYIIGESVGEDLVNEIFAEFCMGK 472


>gi|297545652|ref|YP_003677954.1| tRNA modification GTPase TrmE [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843427|gb|ADH61943.1| tRNA modification GTPase TrmE [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 462

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 159/464 (34%), Positives = 243/464 (52%), Gaps = 26/464 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGL 56
           M    +TI A+ST    + I I+R+SG    ++   I K  K       +  +L Y   +
Sbjct: 1   MKMAFDTIAAISTFPGEAGIGIVRISGDDALEIISKIFKPYKAKDIKKVKSHTLHYGHIV 60

Query: 57  D---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           D     I D+ L+ +   P ++T ED  E + HGGI + + ILE + K    RLA PGEF
Sbjct: 61  DPETQEIYDEVLVSIMKKPNTYTREDIVEINCHGGIVITSKILELVLK-QGARLAEPGEF 119

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NG+IDL +AE++ D+I+++T +  + + + ++G + S   +  DK+  +   + 
Sbjct: 120 TKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLAGYVGSRIKEMKDKIMGLLVHLL 179

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF E EDV+    KE+L     +  DI   I   + G IIR G K  I+G  N GKS
Sbjct: 180 ALIDFPE-EDVEELERKEMLETAKEIVEDIDKLIVSSESGRIIREGLKTAIIGKPNVGKS 238

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G++R+ 
Sbjct: 239 SLLNALLKENRAIVTDIPGTTRDIIEEYINVKGIPIKLIDTAGIRDTDELVEKIGVERSK 298

Query: 294 LEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTE---------E 338
             +  ADLIL + + + +      +        + IF+  K DL     E          
Sbjct: 299 EVLAEADLILFVLDASRELSEEDYQIFDILTEKNIIFVLNKIDLPKKIDESKLKSLIKDG 358

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEM-ASLN 396
               +S+    GLE+L N I  ++      L    I  + RH   L    +Y+E      
Sbjct: 359 IIIEVSTVERIGLEKLENAIYDLVFRGDINLREEEIIINSRHKEALINAKKYMESCVKAI 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E     D+I  +L  A   LGKITG    E L++ IF +FC+GK
Sbjct: 419 EMGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 462


>gi|312130569|ref|YP_003997909.1| tRNA modification gtpase trme [Leadbetterella byssophila DSM 17132]
 gi|311907115|gb|ADQ17556.1| tRNA modification GTPase trmE [Leadbetterella byssophila DSM 17132]
          Length = 444

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/449 (34%), Positives = 250/449 (55%), Gaps = 14/449 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGR 59
           MN  ++TI AV+T     A++IIR+SGP    + + + K K        ++ Y   +DG 
Sbjct: 1   MNF-QDTICAVATPPGVGALAIIRVSGPEAISLVDAVFKGKSLKHAEGNTIVYGHIVDGE 59

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ VF +P SFTGEDS E   HG   ++  +++ L +    R A PGEF++RAF
Sbjct: 60  KVVDEVLVSVFRNPRSFTGEDSLEISTHGSPFIIRYVMKLLVQ-KGCRPAGPGEFTQRAF 118

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL++AE++ADLI++++E   + ++  + G  S       + L H  S +E +LDF
Sbjct: 119 LNGRLDLVQAEAVADLIAADSEAAHKTALNQLRGGFSRKLAILREDLIHFASLVELELDF 178

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E EDV+     ++   IL L++ I   I   + G  I+ G+ + I+G  NAGKS+L NA
Sbjct: 179 GE-EDVEFADRDDLKALILNLQDQIRPLIQSFESGNAIKEGFPVAIIGAPNAGKSTLLNA 237

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVTDI GTTRD++   L ++G   +  DTAGIRET+D++E  GI+R+   +++
Sbjct: 238 LLNEDRAIVTDIAGTTRDIIEDTLIIDGIKFRFIDTAGIRETEDLIEAMGIERSKKALQD 297

Query: 299 ADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           A L+L L +     E          ++    ++  K+D+  +   E +  IS+    G+E
Sbjct: 298 ARLVLFLYDSTQGYEFLQDLQGLIREDQTLFWVRNKTDIDESSIREGEIRISARAQVGIE 357

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRL 411
            L  +I   +++   K   +  ++ RH  HL++    L+            D +A+++RL
Sbjct: 358 ALKKQISQSVADL--KTTDTTITNVRHFDHLTKAYSALDDVLTGLHSGITGDFLAQDIRL 415

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   LG+ITG +  + LL  IF KFCIGK
Sbjct: 416 ALHHLGEITGTISTDDLLKNIFGKFCIGK 444


>gi|170734511|ref|YP_001766458.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia MC0-3]
 gi|205829124|sp|B1K0Y2|MNME_BURCC RecName: Full=tRNA modification GTPase mnmE
 gi|169817753|gb|ACA92336.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia MC0-3]
          Length = 464

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/466 (33%), Positives = 243/466 (52%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  +K  PR AS   F  
Sbjct: 2   LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCG-QKLAPRHASYVPFLD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 61  AHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPE-EEIDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIART 299

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +        +      FP  +  + +  K+DL          +   
Sbjct: 300 WSEIERADVVLHLLDSRTGMTPDDETIAARFPAGVPVVRVLNKTDLTGVPACVEHPAAEG 359

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
           +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+  
Sbjct: 360 DLTEVHLSAKRGDGIDMLRAELLRIAGWQAG-AEGVYLARERHLIALRAAQEHLAQAADH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|326573502|gb|EGE23468.1| tRNA modification GTPase TrmE [Moraxella catarrhalis O35E]
          Length = 466

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/461 (35%), Positives = 255/461 (55%), Gaps = 31/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG   +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   + N +  + + I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307

Query: 307 EINSKKEISFPKN----------------IDFIFIGTKSDLY----------STYTEEYD 340
           ++ ++ +     +                   I +  KSDL            T +    
Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLISKPVLQVSCETKSAPKL 367

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKD 399
             +S  TG GL+ELI  +   +   F     S+ +  RHL  L++   Y +E        
Sbjct: 368 VYVSCETGVGLDELIEILTQKV--GFHPPENSLIARTRHLDALNRAKGYAIEAYEQLTIY 425

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +++AE+LR +  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 426 HAGELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466


>gi|209883526|ref|YP_002287383.1| tRNA modification GTPase TrmE [Oligotropha carboxidovorans OM5]
 gi|209871722|gb|ACI91518.1| tRNA modification GTPase TrmE [Oligotropha carboxidovorans OM5]
          Length = 442

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 175/445 (39%), Positives = 259/445 (58%), Gaps = 8/445 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M  +  TI+A+++G  P+AI+I+R+SGP   QV E +C +  P PR A+L          
Sbjct: 1   MPLQPPTIYALASGRPPAAIAIVRVSGPQVPQVLERLCGR-LPQPRTATLVTLTSPGTGP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ + + FP+P S TGED AEF +HGG AV+  +   L K+  LR A PGEF+RRAFEN
Sbjct: 60  IDQAVALWFPAPHSATGEDVAEFQLHGGRAVIAALFAALEKIDGLRPAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++T+ QRR ++  + G L      W  ++    + IEA +DFS+
Sbjct: 120 GKLDLTEAEGLDDLIHADTDRQRRQALRHLQGLLGHRAESWRAQIIEAMALIEAGIDFSD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV        L  +  L+ +I   ++     E +R G ++ I G  NAGKS+L N LA
Sbjct: 180 EGDVSTELMAPALARVASLRTEIEETLAASAQSERLREGLQVAIAGPPNAGKSTLLNRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIV+   GTTRD++ + LDL+GY V + DTAG+R+  D VE+EG++R     E AD
Sbjct: 240 RREAAIVSPHAGTTRDIIEVHLDLDGYPVTLIDTAGLRDASDPVEQEGVRRARARAEAAD 299

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEGLEELI 355
           L+L L E  S         +    +  K DL      ST   +    IS+ TGEG+++L+
Sbjct: 300 LVLWLDEAESNAT-PLAGEVPLWRVRNKIDLAGKVGASTGGSDPAFAISAVTGEGVDQLV 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
             +    S+ F     ++ S  RH   L++TV  L+ A  +    G +I+AE LR+A  +
Sbjct: 359 AALVGFASDYFGGGEAALVSRARHRVLLTETVAALKRAE-DRAGQGDEIVAEELRIAIHA 417

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           +G++ G VDVE++LD IF +FCIGK
Sbjct: 418 VGRLLGRVDVEEILDSIFREFCIGK 442


>gi|295425821|ref|ZP_06818502.1| tRNA modification GTPase TrmE [Lactobacillus amylolyticus DSM
           11664]
 gi|295064514|gb|EFG55441.1| tRNA modification GTPase TrmE [Lactobacillus amylolyticus DSM
           11664]
          Length = 461

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 140/459 (30%), Positives = 235/459 (51%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+R+SG    ++   + K      +  +    +G       
Sbjct: 6   TEFDTIAAISTPIGEGGISIVRMSGEDAVKIANQVFKGAD-LTKVPTHTIHYGHIIDPDT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+ ++ V  +P++FT ED  E + HGGI V N +L+ L      R+A+PGEF++RA
Sbjct: 65  NKTIDEAMVTVLRAPKTFTREDIIEINCHGGIVVTNHVLQ-LLLAHGARMADPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R++++  ++G L         ++    + +E ++D
Sbjct: 124 FVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLMHKIRAMRKEILDTLANVEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D    ++K++ +    +   I   +   + G I+RNG    I+G  N GKSSL N
Sbjct: 184 YPEY-DADQVTAKQMADTSKNVIQKIDRLLKTAQEGTILRNGLATAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + +    +K+ DTAGI  TDD VEK G++R+   ++
Sbjct: 243 YLTQSDKAIVTDVAGTTRDTLEEYISVNSVPLKLIDTAGIHHTDDKVEKIGVERSQKALK 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--------I 343
            ADL+LLL + +       K  +   +N   I I  K DL    T +  H          
Sbjct: 303 QADLVLLLLDGSQELTDEDKTLLKETENKKRIIILNKMDLGQKLTAKGMHDSTGSEVVST 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEM-ASLNEKDCG 401
           S      L+EL + IK +  +        I  +++R    L++  + L+      E    
Sbjct: 363 SILKETNLDELEDLIKKMFFSGITNSNDQIMVTNQRQAGLLAKAKKQLQDVVKAVEDGVP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI   +   A  +LG+ITG    ++L++ +FS+FC+GK
Sbjct: 423 VDIAQIDFNGAWDTLGEITGDSAPDELVNALFSQFCLGK 461


>gi|293374951|ref|ZP_06621247.1| tRNA modification GTPase TrmE [Turicibacter sanguinis PC909]
 gi|325844341|ref|ZP_08168117.1| tRNA modification GTPase TrmE [Turicibacter sp. HGF1]
 gi|292646428|gb|EFF64442.1| tRNA modification GTPase TrmE [Turicibacter sanguinis PC909]
 gi|325489208|gb|EGC91590.1| tRNA modification GTPase TrmE [Turicibacter sp. HGF1]
          Length = 452

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 152/451 (33%), Positives = 251/451 (55%), Gaps = 16/451 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDGRI--- 60
           ++TI  +ST     AISIIRLSG     +   I + K        ++ Y F  D      
Sbjct: 3   QDTIAGISTAMGEGAISIIRLSGDEALDIANKIFRGKDLKSVASHTINYGFIYDPETDRK 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT ED  E + HGGI V N ILE L  +   RLA PGEF++RAF N
Sbjct: 63  VDEVLVSVMRAPKTFTAEDIVEINCHGGILVTNKILE-LILLAGARLAEPGEFTKRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ D+I +++E    L++ G+ G +S L  +  +++ +I + IE ++D+ E
Sbjct: 122 GRIDLAQAESIMDIIHAKSEQSLSLALNGLDGRVSRLIKEMREEILNILANIEVNIDYPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  ++  +L   + +   +   +   K G+I+R+G K VI+G  N GKSSL N L 
Sbjct: 182 YDDVEEMTNDILLPRSIDIHEKMLKLLDTAKTGKILRDGIKTVIIGRPNVGKSSLLNQLM 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVT+I GTTRD +   +++ G  + + DTAGIR+T+DIVE  G++++   +  A+
Sbjct: 242 REEKAIVTNIAGTTRDTVEGYINIGGLTLNLIDTAGIRDTEDIVEAIGVEKSKKLINEAE 301

Query: 301 LILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEE---YDHLISSFTGEGL 351
           L+LL+         + ++ +S   + + I I  K+DL +    +        S    +G+
Sbjct: 302 LVLLVLNNNEKLTADDRELLSLTNDKNRIIILNKTDLETQIERDELPNYIETSMVLEKGI 361

Query: 352 EELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENL 409
           E L N+IK +           +  S+ RH+  L Q +  +  A S  +    +D++  ++
Sbjct: 362 EVLENQIKKMFEIGDIGAKDMTYLSNARHIAKLKQAINSINDAISAMQLGMLVDMVEIDI 421

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + A  SLG+I G    + LLD +FSKFC+GK
Sbjct: 422 KNAWYSLGEIIGEDMGDSLLDELFSKFCLGK 452


>gi|115353264|ref|YP_775103.1| tRNA modification GTPase TrmE [Burkholderia ambifaria AMMD]
 gi|115283252|gb|ABI88769.1| tRNA modification GTPase trmE [Burkholderia ambifaria AMMD]
          Length = 489

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 152/466 (32%), Positives = 243/466 (52%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  ++  PR AS   F  
Sbjct: 27  LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCG-QRLAPRHASYVPFVD 85

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 86  EHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQPGE 145

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +
Sbjct: 146 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRMLV 205

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 206 EATLDFPE-EEIDFLEAADARGKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNVGK 264

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT
Sbjct: 265 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIART 324

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +        +      FP  +  + +  K+DL          +   
Sbjct: 325 WSEIERADVVLHLLDSRTGMTADDEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPAAAG 384

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
           +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+  
Sbjct: 385 DLTEVHLSAKRGDGIDMLRAELLRIAGWQAG-AEGVYLARERHLIALRAAQEHLAQAADH 443

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 444 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 489


>gi|322421976|ref|YP_004201199.1| tRNA modification GTPase TrmE [Geobacter sp. M18]
 gi|320128363|gb|ADW15923.1| tRNA modification GTPase TrmE [Geobacter sp. M18]
          Length = 455

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 152/454 (33%), Positives = 234/454 (51%), Gaps = 20/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK---PFPRKASLRYFFGLD-GRI 60
           ++TI A+ST      I I+R+SGP+   + + I K K        + S       D G +
Sbjct: 4   RDTIAAISTPLGEGGIGIVRISGPASLPIAQIIFKAKSNGGLKSHRFSYGAVVSPDSGDL 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ + +    P S+T ED  E   HGG  VV+ IL  L      RLA+PGEF++RAF N
Sbjct: 64  VDEAMAVYMKGPNSYTREDVVEIQCHGGTLVVSRILS-LVLTEGARLADPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL++AE++ D+ISS T+    L+     G LS       D + +  +++EA +DF E
Sbjct: 123 GRIDLVQAEAVMDVISSRTDASLALAQHQREGLLSKRIAAVKDGIVYALAYVEALIDFPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV      +VL  +     ++ + I     G ++R G  +VI G  N GKSSL N L 
Sbjct: 183 -DDVDVAVETDVLGKVAPALAELDALIEGFDEGRVLREGVSVVIAGKPNVGKSSLLNTLL 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K+  AIVT +PGTTRD++   +++ G  VK+ DTAGIRE++D VE+EG++ +   +  AD
Sbjct: 242 KEKRAIVTSVPGTTRDLIEEVVNINGLPVKLLDTAGIRESEDQVEQEGVRLSLDRIPKAD 301

Query: 301 LILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL-----ISSFTGE 349
           L+L + + +S         +    +   I +  KSDL        D       IS+ TG 
Sbjct: 302 LVLFVVDGSSPFGEEDASILLAIGSKSCIVVRNKSDLPVAAALPGDCSAPVVAISTLTGA 361

Query: 350 GLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           G+ EL + I +   +        F   S  RH   L +    L+    N E    ++++ 
Sbjct: 362 GVPELRDAITNAFMHGHAIDGREFVAVSKARHRDALLKARISLQAFVGNLEAGVNMELLP 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LR A  ++G++TG    + +LD IFS FCIGK
Sbjct: 422 VDLRDALDAVGEVTGETTADDVLDRIFSSFCIGK 455


>gi|116630435|ref|YP_819588.1| tRNA modification GTPase TrmE [Lactobacillus gasseri ATCC 33323]
 gi|238853335|ref|ZP_04643715.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 202-4]
 gi|282850777|ref|ZP_06260152.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 224-1]
 gi|311111579|ref|ZP_07712976.1| tRNA modification GTPase TrmE [Lactobacillus gasseri MV-22]
 gi|122272628|sp|Q040F3|MNME_LACGA RecName: Full=tRNA modification GTPase mnmE
 gi|116096017|gb|ABJ61169.1| tRNA modification GTPase trmE [Lactobacillus gasseri ATCC 33323]
 gi|238834023|gb|EEQ26280.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 202-4]
 gi|282558185|gb|EFB63772.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 224-1]
 gi|311066733|gb|EFQ47073.1| tRNA modification GTPase TrmE [Lactobacillus gasseri MV-22]
          Length = 461

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 143/459 (31%), Positives = 242/459 (52%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            + +TI A+ST      ISI+RLSG     +   + K      +  +    +G       
Sbjct: 6   TQFDTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGAD-LTKVPTHTIHYGHIVDPKT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ ++ V  +P++FT ED  E + HGG+ V N IL+ L      R+A+PGEF++RA
Sbjct: 65  KEVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R+++M  ++G L         +L    +  E ++D
Sbjct: 124 FMNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIKTMRQELLDTMAHEEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D+ + +S+E+      +   I   +   + G+IIRNG    I+G  N GKSSL N
Sbjct: 184 YPEY-DMDDLTSQEMKKKAQEVSKQIEQLLQTAQEGKIIRNGLATAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTDI GTTRD L   + ++G  +K+ DTAGI  T+D VEK G++R+   ++
Sbjct: 243 YLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVERSKKAIK 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLI 343
            ADL+LLL + +       K+ +    N   I I  K DL +  ++E           + 
Sbjct: 303 EADLVLLLLDASQDLTAEDKRLLDLTANKKRIIILNKQDLGTKISQEMIKDITDNPIIVT 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CG 401
           S    + ++ L N I+ +  +  +      + +++R    L++  + LE       D   
Sbjct: 363 SILKQKNMDALENAIEKLFFSGIENSQNQILVTNQRQAGLLTKAKQSLEDVISGIDDAMP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD++  +L+ A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 423 LDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|27262204|gb|AAN87383.1| thiopene and furan oxidation protein ThdF [Heliobacillus mobilis]
          Length = 472

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 147/479 (30%), Positives = 240/479 (50%), Gaps = 46/479 (9%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL---------- 50
           M    +TI AV+T      I I+R+SGP   +V + +       PR  S           
Sbjct: 1   MFMVGDTIAAVATAIGEGGIGIVRVSGPDAKEVIQKVF-----LPRYGSSVDSWTSHTLH 55

Query: 51  --RYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLA 108
                   DG ++D+ L      P SFT ED  EFH HGG   V   L  + +   +RLA
Sbjct: 56  LGHVVHPDDGHVIDEVLCAWMAGPHSFTTEDVVEFHCHGGSVPVRETLNAVLRA-GVRLA 114

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
            PGEF+RRAF  G++DL +AE++  +I S+T      ++  + G+LS    +  +++  +
Sbjct: 115 EPGEFARRAFLGGRLDLAQAEAIIGIIRSKTRDGLGAAVSQLEGQLSRRISKVRNEILAV 174

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
            + +EA +DF E ED+ + + + +  D+  +  +I   +++ + G +++ G++ VI G  
Sbjct: 175 LAHLEALIDFPE-EDLPDITPERLSKDVQAIFMEIQRLLNRSQTGRVLQEGWRTVIAGRP 233

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           N GKSSL NAL  +  AIVTDIPGTTRD +   +++ G  +++ DTAGIRET+D+VEK G
Sbjct: 234 NVGKSSLLNALLDEQRAIVTDIPGTTRDAIEEFIEIGGIPLRLVDTAGIRETEDLVEKIG 293

Query: 289 IKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLY---------- 332
           +++T   +E ADL+L + +       + ++ +   +    + +  KSDL           
Sbjct: 294 VEKTREYMEKADLVLYVLDGSDELSNDDEELLRSLQERPSVVLVNKSDLAIRRLDEQQLR 353

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI----------PSHKRHLYH 382
           +   ++    +S+  G GLEEL  +I+ ++         SI           +  RH   
Sbjct: 354 AVIGDKLIIYMSAKEGWGLEELAVQIRRLVYKDEAGNSLSIMDPTESRLDLITQARHREA 413

Query: 383 LSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L +   ++       E     D +  +L+ A  +LG+I G    E +LD IFS FCIGK
Sbjct: 414 LERAQSHIRSVQSGLEMALSPDFLTIDLKAAWEALGEIIGETVGEDILDKIFSSFCIGK 472


>gi|325685111|gb|EGD27242.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 461

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 144/459 (31%), Positives = 245/459 (53%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+R+SG     +   + K +    +  S    +G       
Sbjct: 6   TEFDTIAAISTPLGEGGISIVRVSGEDAAAIVNRLFKGED-LEKVPSHTINYGHIVDPAT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+++D+ +  V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RA
Sbjct: 65  GQVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQ-LLLANGARMADPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D+I ++T+  R+++++ +SG L +       ++  + + +E ++D
Sbjct: 124 FVNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRVLRQEILDVLANVEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D +  +++++L     +   I   +   + G+I+RNG K  I+G  N GKSSL N
Sbjct: 184 YPEY-DEEEVTAQKMLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  T+D VEK G++R+   + 
Sbjct: 243 YLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIGVERSKKAIA 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD--------HLI 343
            ADLILLL + +       ++ +        I +  K DL    T               
Sbjct: 303 QADLILLLLDGSQELTEEDRRLLELTAGKKRIIVLNKMDLGQKLTAAEIAKESGSEVIST 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    E L+EL   IK +     +      + +++R    L++  + L ++AS  E    
Sbjct: 363 SIMMKENLDELEALIKKLFFKGIENSNDQVLVTNQRQAGLLAKAKQQLADVASGLESGMP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +   A  SLG+ITG   +++L++ +FS+FC+GK
Sbjct: 423 VDLVQIDFTGAWESLGEITGDSALDELINDLFSQFCLGK 461


>gi|304318133|ref|YP_003853278.1| tRNA modification GTPase TrmE [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779635|gb|ADL70194.1| tRNA modification GTPase TrmE [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 458

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 151/458 (32%), Positives = 244/458 (53%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD--- 57
            +TI A+ST    + ISIIR+SG    ++   I K K+       +  ++ Y F  D   
Sbjct: 3   DDTIAAISTAVGEAGISIIRISGRDAIKIVSGIFKSKRNIDLKAVKSHTVHYGFIYDSES 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             + D+ L+ V  SP ++T ED  E + HGG      ILE + K    RLA PGEF++RA
Sbjct: 63  NEVYDEVLVNVMKSPHTYTKEDIVEINCHGGYVPAKRILELVLK-NGARLAEPGEFTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+ID+ +AE++ D+I S+T +  + ++  +SG +     +  + L  + + I A +D
Sbjct: 122 FINGRIDMSQAEAVIDIIRSKTALSNKYAVMQLSGSVKDKINEIKNDLVALIAHIFALMD 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F + EDV+ F+  E+++ I      I   +   + G IIR G   VI+G  N GKSSL N
Sbjct: 182 FPD-EDVEIFNDSELIDGIKNAIRKIDELLDSSEKGRIIREGLNTVIIGKPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  ++ AIVTDIPGTTRD++   L+++G  +K+ DTAGIR+TD++VEK G++R+   + 
Sbjct: 241 ALLNENRAIVTDIPGTTRDIIEEYLNIKGIPIKLIDTAGIRDTDELVEKIGVERSKEAIN 300

Query: 298 NADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS--------TYTEEYDHLI 343
            ADLI+ + + +   E      +    + + +++  K DL S          + E    +
Sbjct: 301 KADLIIFVFDNSRPLEKEDYEILRIIDDKNVLYVLNKIDLPSMIDLDEIRRISNENYISL 360

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDCGL 402
           SS T EG + L N + +++          + ++ RH   L +    L    +  E+    
Sbjct: 361 SSVTKEGFDALENTVYNMVMENGLSNNEFLLTNMRHKDALLKAKENLMSCLNTIERGLTE 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D ++ +L  A  +LG ITG    E L++ IF +FC+GK
Sbjct: 421 DFVSIDLNAAIDNLGLITGETANEDLINEIFERFCVGK 458


>gi|166032899|ref|ZP_02235728.1| hypothetical protein DORFOR_02620 [Dorea formicigenerans ATCC
           27755]
 gi|166027256|gb|EDR46013.1| hypothetical protein DORFOR_02620 [Dorea formicigenerans ATCC
           27755]
          Length = 470

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 159/472 (33%), Positives = 243/472 (51%), Gaps = 34/472 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFG--L 56
           M +E  TI A+ST    S I I+R+SG    ++ E I K K  K   ++ +    +G  +
Sbjct: 1   MRNESGTIAAISTAMSNSGIGIVRMSGEEAVEIAERIYKGKNEKKLSKQPTHTIHYGYIV 60

Query: 57  DGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           DG   +D+ L+++   P S+TGED+ E + HGG+ VV  ILE + K    R A+PGEF++
Sbjct: 61  DGEDTIDEVLVMLMRGPHSYTGEDTVEINCHGGVYVVRRILETVIK-YGARPADPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NGK+DL +AE++ DLISS+ E   R S+  + G +     +  +++ +  +FIE  
Sbjct: 120 RAFLNGKMDLSQAEAVGDLISSKNEYALRSSVSQLKGNIKKEIQKIREEILYHTAFIETA 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LD  E   V  +  K  +     +K+ +   +S    G +I+ G K VI+G  NAGKSSL
Sbjct: 180 LDDPEHISVDGYGEKLEVVVEDHMKS-LKHLLSTCDDGRMIKEGIKTVIVGKPNAGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  ++ AIVT+I GTTRDVL   ++L+G  + I DTAGIR+T+D+VEK G+ R    
Sbjct: 239 LNVLLGEERAIVTEIAGTTRDVLEEHMNLQGISLNIVDTAGIRDTEDVVEKIGVDRAKEN 298

Query: 296 VENADLILLLKEINS---------------KKEISFPKNIDFIFIGTKSDLYSTYTE--- 337
            ++ADLI+ + + ++               +K I      D   I  K ++   Y+E   
Sbjct: 299 AKDADLIMYVIDASAPLDENDDDIMRMIYGRKAIILLNKADLNTILGKDEIKKKYSEINQ 358

Query: 338 -------EYDHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRY 389
                       IS+  G+G+ EL   +K +    K         ++ RH   L+     
Sbjct: 359 LESCDIFPAIIEISAKNGQGISELEQTLKEMFFEGKISFNDEIYITNVRHKTALNNAYEA 418

Query: 390 LEMASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L+      +     D  + +L  A   LG ITG    E L++ IFSKFC+GK
Sbjct: 419 LKKVKESIDMGMPEDFYSIDLMDAYEELGSITGETIGEDLVNEIFSKFCMGK 470


>gi|205829067|sp|A1WDB4|MNME_ACISJ RecName: Full=tRNA modification GTPase mnmE
          Length = 466

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/468 (34%), Positives = 241/468 (51%), Gaps = 31/468 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     + + +C +    PR+A+   F    G+ 
Sbjct: 2   LPRHSDPIVAIATAPGRGAVGIVRVSGKQIGALVQALCGRAL-KPREATYLPFRDAAGQA 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM-----PNLRLANPGEFSR 115
           +D+GL + FP+P S+TGED  E   HGG  V+  +L    +      P LRLA PGEF+ 
Sbjct: 61  IDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQGLLPRLRLAEPGEFTE 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N KIDL +AE++ADLI + TE   R +   +SG+ S       D L H+R  +EA 
Sbjct: 121 RAFLNDKIDLAQAEAIADLIDASTEAAARGASRSLSGDFSREIHTLRDALVHLRMLVEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF E E++      +    +  LK  ++  + +   G ++R G K+VI G  NAGKSSL
Sbjct: 181 LDFPE-EEIDFLRKADASGQLSNLKRSLARVMQRASQGALLREGIKVVIAGQPNAGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+RE+DD VE+ GI R + E
Sbjct: 240 LNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESDDEVERIGIARAWDE 299

Query: 296 VENADLILLLKEI---------NSKKEIS------FPKNIDFIFIGTKSDLYSTYT---- 336
           +  AD +L L ++         +    I+       P  +  + +  K+D          
Sbjct: 300 IAGADAVLFLHDLTRWGSAQYQDDDAAIAHTLSNRLPAGVPVVDVWNKADAAPQAAAPAR 359

Query: 337 --EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EM 392
             E    L+S+ TG+GL+ L  ++  I   +         +  RH+  L     +L    
Sbjct: 360 EGESQAVLLSARTGQGLDTLRRQLLQIAGWQ-SAAEGVYIARARHIEALRAVDAHLMEAA 418

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A L      LD++AE LRLA  +L  ITG    + LL +IFS FCIGK
Sbjct: 419 AQLESDGPALDLLAEELRLAQNALNTITGEFTSDDLLGVIFSSFCIGK 466


>gi|107024092|ref|YP_622419.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia AU 1054]
 gi|116691178|ref|YP_836801.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia HI2424]
 gi|123371157|sp|Q1BSF9|MNME_BURCA RecName: Full=tRNA modification GTPase mnmE
 gi|205829125|sp|A0KBN1|MNME_BURCH RecName: Full=tRNA modification GTPase mnmE
 gi|105894281|gb|ABF77446.1| tRNA modification GTPase trmE [Burkholderia cenocepacia AU 1054]
 gi|116649267|gb|ABK09908.1| tRNA modification GTPase trmE [Burkholderia cenocepacia HI2424]
          Length = 464

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/466 (33%), Positives = 243/466 (52%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  +K  PR AS   F  
Sbjct: 2   LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCG-QKLAPRHASYVPFLD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 61  AHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPE-EEIDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIART 299

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +        +      FP  +  + +  K+DL          +   
Sbjct: 300 WSEIERADVVLHLLDSRTGMTADDETIAARFPAGVPVVRVLNKTDLTGVPACVEHPAAEG 359

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
           +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+  
Sbjct: 360 DLTEVHLSAKRGDGIDMLRAELLRIAGWQAG-AEGVYLARERHLIALRAAQEHLAQAANH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|88705405|ref|ZP_01103116.1| tRNA modification GTPase trmE [Congregibacter litoralis KT71]
 gi|88700495|gb|EAQ97603.1| tRNA modification GTPase trmE [Congregibacter litoralis KT71]
          Length = 457

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 168/458 (36%), Positives = 253/458 (55%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M  + +TI A++TG+    + IIRLSGP  F +   +        R+A           +
Sbjct: 4   MVGDSDTIVAIATGSGAGGVGIIRLSGPDAFTIARKMT-ATDAKARQAHFVSIVDGQNAV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GLL+ FP P SFTGED AE H HGG  ++  +L E       R A PGEFS+RAF N
Sbjct: 63  LDQGLLLQFPGPHSFTGEDVAELHCHGGPVLLRTVLRECI-YHGARQATPGEFSQRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            KIDL++AE++ADLISS TE   R +   ++G  S      +++L  +R FIEA +DF E
Sbjct: 122 NKIDLVQAEAIADLISSSTEAAARSASRSLTGSFSVQVDALLEQLIRLRVFIEAAIDFPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +  +VL  +  L + I++ +   + G  +R+G K+VI G  NAGKSSL N LA
Sbjct: 182 -EEIDFIAESDVLERLETLASSINALLKSARRGRTLRDGLKLVIAGAPNAGKSSLLNQLA 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++D AIVTDIPGTTRD+L   + ++G  + I DTAG+R++ D +E+EGI+R   E+++AD
Sbjct: 241 EQDSAIVTDIPGTTRDLLREHIQIDGLPLHIVDTAGLRDSGDAIEQEGIRRARSEMQSAD 300

Query: 301 LILLLKEINSKKEI------------SFPKNIDFIFIGTKSDLYS-----TYTEEYDHLI 343
            ILL+ + + +  +              P+ +    I  K D+ +     T  +  +  +
Sbjct: 301 HILLVVDNSGESALLDAATLVSHYEGDLPEAVPITLIRNKCDIQNIPATFTTGDINEICL 360

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-L 402
           S+  G+G++ L   + +              + +RH+  L +   +L    L  KD G  
Sbjct: 361 SALRGDGIDLLRRHLLTTA-GIADTESSDFSARERHVLALEECAGHLAQGLLQLKDHGAA 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++IAE+LR A  SLG ITG    ++LL  IF  FCIGK
Sbjct: 420 ELIAEDLRYAQDSLGSITGSFSSDELLGEIFGSFCIGK 457


>gi|227529882|ref|ZP_03959931.1| tRNA modification GTP-binding protein TrmE [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350186|gb|EEJ40477.1| tRNA modification GTP-binding protein TrmE [Lactobacillus vaginalis
           ATCC 49540]
          Length = 462

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 130/462 (28%), Positives = 232/462 (50%), Gaps = 25/462 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
           N + +TI A+ST      ISIIR+SG     V + I + K    +  +    +G      
Sbjct: 3   NTDNDTIAAISTPVGEGGISIIRISGDDAIPVAQKIYRGKD-LAKVHTNTINYGHVIDPD 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +   +D+ ++ V  +P ++T ED  E + HGG+   N IL+ L      R+A PGEF++R
Sbjct: 62  NNEEVDEVMVSVMRAPHTYTCEDVVEINCHGGLLATNRILQ-LVLSYGARMAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL ++E++ DLI ++T+   ++++  + G LS L  +    +  + + +E ++
Sbjct: 121 AFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGNLSHLIRKLRKDILDVLAQVEVNI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E + V+  ++K +      ++  I + +   K G+++R G    I+G  N GKSSL 
Sbjct: 181 DYPEYDAVEEMTTKMLKEKATEIRQRIEALLKTAKQGKVLREGLATAIIGRPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L  +D AIVT++ GTTRDV+   +++ G  +K+ DTAGI +T D VEK G++R+   +
Sbjct: 241 NSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIHDTKDQVEKIGVERSRKAL 300

Query: 297 E---------------NADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           +                A+   LL+    K+ I      D      + +L     ++   
Sbjct: 301 DAADLILLLIDNSEELTAEDRELLEATKDKQRIVILNKTDLPNKVDRDELKKLVGDDKLI 360

Query: 342 LISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEK 398
             S    EG+ +L   I  +   +         + ++ RH+  L Q    L ++      
Sbjct: 361 ETSIVKNEGMNQLGETISKMFFEEGIENNQNSVMVTNARHIGLLHQADDALGDVLKGIAA 420

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  ++      LG+ITG    ++LLD +FS+FC+GK
Sbjct: 421 GMPVDLVQIDMTRCWDLLGEITGDSYQDELLDQLFSQFCLGK 462


>gi|205422374|sp|Q0KFG6|MNME_RALEH RecName: Full=tRNA modification GTPase mnmE
          Length = 475

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 158/478 (33%), Positives = 244/478 (51%), Gaps = 41/478 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   +  I A++T      I ++R+SGP    V   +C  +   PR A+   F    G++
Sbjct: 1   MTAPQVPIAAIATAPGRGGIGVVRVSGPDVGPVMRSVCG-QALKPRHATYLPFLDGHGKV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRA 117
           +D GL + FP+P S+TGE+  E   HGG  V+  +L    +      LRLA PGEF+RRA
Sbjct: 60  IDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGDGIGLRLAEPGEFTRRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K+DL +AE++ADLI + TE   R +   M GE S+   Q +DK+ H+R  +EA LD
Sbjct: 120 FLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSNAIRQLVDKVIHLRMLVEATLD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E E++      +    +  ++ ++S  ++Q + G ++R G  +V+ G  N GKSSL N
Sbjct: 180 FPE-EEIDFLEQSDARGQLATIRTELSGVLAQARQGALLREGLSVVLAGQPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEV 296
           ALA  ++AIVT I GTTRD +   + ++G  + I DTAG+RE   D VE+ GI+RT+  +
Sbjct: 239 ALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLREHAADEVERIGIERTWDAI 298

Query: 297 ENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSD----------- 330
             AD++L L +               I+ +     P     + I  K D           
Sbjct: 299 RRADIVLHLVDATDYLRHGLSETDDAIDDQLSGQLPPGSPIVRIVNKIDKAPAVGDVVFG 358

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                 + +      +  IS+ TG G+E L  ++  ++  +      +  + +RHL  L 
Sbjct: 359 GNRPHVVAANGPNPTEIWISARTGAGIELLRRELLRLVGWQSGN-EGNFLARERHLTALR 417

Query: 385 QTVRYLEMASLNE--KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +L++A+     +   LD+ AE LRLA   L  ITG    + LL  IF++FCIGK
Sbjct: 418 NAQSHLDIAAEQAEHQAQALDLFAEELRLAQDCLNSITGEFTSDDLLGTIFTRFCIGK 475


>gi|167038669|ref|YP_001666247.1| tRNA modification GTPase TrmE [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|205829184|sp|B0K8H9|MNME_THEP3 RecName: Full=tRNA modification GTPase mnmE
 gi|166857503|gb|ABY95911.1| tRNA modification GTPase TrmE [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
          Length = 460

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 160/460 (34%), Positives = 242/460 (52%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR- 59
            +TI A+ST    + I I+RLSG    ++   I K  K       +  +L Y   +D   
Sbjct: 3   FDTIAAISTFPGEAGIGIVRLSGDDALEIISKIFKPYKSKDIKKVKSHTLHYGHIVDPET 62

Query: 60  --ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++RA
Sbjct: 63  EEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLK-QGARLAEPGEFTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I ++T +  R + + + G + S   +  DK+  +   + A +D
Sbjct: 122 FLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLLVHLLALID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E EDV+    KE+L     +  DI   I+  + G IIR G K  I+G  N GKSSL N
Sbjct: 182 FPE-EDVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   + 
Sbjct: 241 ALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVTKSKEVLA 300

Query: 298 NADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHL 342
            ADLIL + + + +      +        + IF+  K DL     E+             
Sbjct: 301 EADLILFVLDASRELTKEDYEIFDILTGKNIIFVLNKIDLPKKIDEKELKDLTKDGIIIE 360

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDC 400
           +S+    GLEEL N I +++      L    I  + RH   L    +Y+E      E   
Sbjct: 361 VSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALINAKKYMESCVEAIEGGY 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D+I  +L  A   LGKITG    E L++ IF +FC+GK
Sbjct: 421 SEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 460


>gi|293380887|ref|ZP_06626923.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 214-1]
 gi|290922560|gb|EFD99526.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 214-1]
          Length = 461

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 141/459 (30%), Positives = 239/459 (52%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+R+SG    ++ + + K +    +  +    +G       
Sbjct: 6   TEFDTIAAISTPIGEGGISIVRMSGEDAIKIADEVFKGED-LSKVPTHTIHYGHIIDPDT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+ +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RA
Sbjct: 65  GKTIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQ-LLLSHGARMADPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R++++  ++G L         ++ +  + +E ++D
Sbjct: 124 FVNGRIDLTQAESVMDIVRAKTDKARQVAIGQLAGGLLHKIQAMRQEILNTLANVEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D    ++K++ +    + + I+  +   + G+I+RNG    I+G  N GKSSL N
Sbjct: 184 YPEY-DADTVTAKQMADTSKSVIDKINRLLKTAQEGKILRNGLATAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  T+D VEK G++R+   +E
Sbjct: 243 YLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVERSKKALE 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLI 343
            ADL+LLL + +       +  I   K+   I I  KSDL            T       
Sbjct: 303 RADLVLLLIDASQALTAEDQALIEATKDKKRIVILNKSDLGQKITTTEMEKLTGSDVIST 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    + L+ L   I  +     +     I  +++R    L +  + LE      E    
Sbjct: 363 SILKEQNLDALEELINKLFFAGIENSNDQIMVTNQRQASLLHKAKKELEDVIQAVEDGVP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 423 VDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|254515875|ref|ZP_05127935.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR5-3]
 gi|219675597|gb|EED31963.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR5-3]
          Length = 458

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 174/456 (38%), Positives = 252/456 (55%), Gaps = 23/456 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A++TG     + IIRLSGP  F V + +        R+A         G +LD+
Sbjct: 7   DSDTITAIATGPGAGGVGIIRLSGPKAFSVAQAVTG-VTAKARQAHYVQIHDRHGDVLDQ 65

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGED AE H HGG  ++  +L E   +   R A PGEFS+RAF N KI
Sbjct: 66  GLLLQFPGPHSFTGEDVAELHCHGGPVLLRTVLRECIHL-GARQAAPGEFSQRAFLNNKI 124

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE++ADLISS TE   R +   +SG  S+     +++L  +R FIEA +DF E E+
Sbjct: 125 DLVQAEAIADLISSSTEAAARSASRSLSGAFSTQVDALLEQLIRLRVFIEAAIDFPE-EE 183

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +VL  +  ++  I S ++  + G  +R+G K+VI G  NAGKSSL N LA++D
Sbjct: 184 IDFIAESDVLERLESIEASIDSLLAGARRGRTLRDGLKLVIAGAPNAGKSSLLNQLAEQD 243

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDIPGTTRDVL   + ++G  + I DTAG+R++ D +E+EGI+R   E+++AD IL
Sbjct: 244 SAIVTDIPGTTRDVLREYVQIDGLPLHIVDTAGLRDSADAIEQEGIRRARTEMQSADHIL 303

Query: 304 LLKE---INSKKEIS---------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
           L+ +   IN+ K+ +          P  +    I  K DL           +  +  +S+
Sbjct: 304 LVIDSSQINNTKDSTTLIAAYKGDLPPAVPITLIRNKCDLSETPAFIDRDKDVTEISLSA 363

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDI 404
            +G+G+  L   + S                +RH+  L     +L       K  G  ++
Sbjct: 364 RSGDGIALLRQHLLSAAGMSDSDSSDFSA-RERHVLALEDCAHHLRQGLFQLKQHGAAEL 422

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           IAE+LR A  SLG ITG    ++LL  IFS FCIGK
Sbjct: 423 IAEDLRYAQDSLGSITGSFSSDELLGEIFSSFCIGK 458


>gi|186477840|ref|YP_001859310.1| tRNA modification GTPase TrmE [Burkholderia phymatum STM815]
 gi|184194299|gb|ACC72264.1| tRNA modification GTPase TrmE [Burkholderia phymatum STM815]
          Length = 466

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/467 (32%), Positives = 244/467 (52%), Gaps = 29/467 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G +  Q        +   PR AS   F   
Sbjct: 2   IATDSDPIVAIATAPGRGGIGVVRISLGRAGEAAAQPMMQALSGQTWTPRHASYVPFLDG 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGEF
Sbjct: 62  GGNALDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCIDAGQAFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSRDIHALVEDVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  ++  +S+ + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPE-EEIDFLEAADARGKLARIRERLALVLSEARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+RET+D VEK GI+RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHVIDTAGLRETEDEVEKIGIERTW 300

Query: 294 LEVENADLILLLKEI-----NSKKEIS--FPKNIDFIFIGTKSDL-----------YSTY 335
            E+E AD++L L +      +  + I+  FP  +  + +  K+DL            S  
Sbjct: 301 GEIERADVVLHLLDARSGMTDDDEAIAARFPAGVPVVRVLNKTDLTGAAPHVEKLNASGE 360

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS- 394
            +  +  +S+  G+G+  L  ++  I   +         + +RHL  L     +L +A+ 
Sbjct: 361 PDLCEVRLSAKMGDGISLLRGELLRIAGWQAG-AESVYLARERHLIALRAAQNHLGLAAE 419

Query: 395 -LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 HADQNAQALDLFAEELRLAQDQLNSITGEFTSDDLLGVIFSRFCIGK 466


>gi|323703263|ref|ZP_08114914.1| tRNA modification GTPase TrmE [Desulfotomaculum nigrificans DSM
           574]
 gi|323531728|gb|EGB21616.1| tRNA modification GTPase TrmE [Desulfotomaculum nigrificans DSM
           574]
          Length = 461

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 156/460 (33%), Positives = 243/460 (52%), Gaps = 27/460 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA------SLRYFFGLDG- 58
           +TI A++T    ++I +IR+SGP    +   +   KK               +    D  
Sbjct: 4   DTIVAIATPLGEASIGVIRISGPDAIAIGRRVFVPKKNKDWYIKDNYKLVYGHVVDPDTR 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            +LD+ LL V   P SFT ED  E   HGGI  +  +L+ L      RLA PGEFS+RAF
Sbjct: 64  EVLDEVLLSVMRGPHSFTAEDVVEISCHGGIVPLRRVLQ-LVLNQGARLAEPGEFSKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ D+I ++T+   +++M  + G LSS        +  + + IEA +DF
Sbjct: 123 INGRLDLAQAEAIIDIIRAKTDAGAKVAMSQLDGRLSSEIISLQTDILGLLAKIEAIIDF 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +D++  +  E+      +   +++ +     G+I R G + VI+G  N GKSSL NA
Sbjct: 183 PE-DDIEEATLDEIAAQCNIMLQKVNTLLDNADTGKIYREGLQTVIIGKPNVGKSSLLNA 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L K+  AIVTDIPGTTRD++   L+++G  +KI DTAG+RETDD+VEK G+ R+   +  
Sbjct: 242 LLKEQRAIVTDIPGTTRDIIEEFLNIQGVPLKIIDTAGLRETDDLVEKLGVARSRQLINQ 301

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST----------YTEEYDHL 342
           ADL+LL+ +       +  K IS  K+   + +  K D+ +             + +   
Sbjct: 302 ADLVLLVLDATTGITEDDLKIISLVKDKKTLVLINKIDIAANRINSDKIKRYLGDSFTLE 361

Query: 343 ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400
           IS+    GL++L   I  + L+ K       I S+ RH   L +  ++L+      K+  
Sbjct: 362 ISAKQEIGLDKLEQAILELVLAGKVTAADNVIISNTRHKQALVRAKQHLQEVQRGIKEFV 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D+I+ +L+ A   LG+ITG    E L+D IF+ FCIGK
Sbjct: 422 PADLISIDLKSAWEILGEITGNNVTEDLIDRIFADFCIGK 461


>gi|182416744|ref|ZP_02948141.1| tRNA modification GTPase TrmE [Clostridium butyricum 5521]
 gi|237669621|ref|ZP_04529599.1| tRNA modification GTPase TrmE [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379401|gb|EDT76896.1| tRNA modification GTPase TrmE [Clostridium butyricum 5521]
 gi|237654855|gb|EEP52417.1| tRNA modification GTPase TrmE [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 460

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/463 (34%), Positives = 256/463 (55%), Gaps = 29/463 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD- 57
            E +TI A++T      I+IIR+SG    ++ + I   K        +  ++RY   +D 
Sbjct: 2   REFDTICAIATPIGEGGIAIIRISGEKALEIADKIFAPKSKKDIKDMKTYTMRYGTIVDL 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               I+D  +L     P S+TGE+  E + HGG+   N +L ++ K    R+A PGEF++
Sbjct: 62  DTKDIIDDVILSYMKGPRSYTGENVIEVNCHGGVVATNRVLNQIVKA-GARIAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE+  D+I ++TE+  + +M    G LS   G+    L ++ + IE  
Sbjct: 121 RAFLNGRIDLSQAEATMDIIKAKTELSMKSAMMQSKGALSKEIGELRKYLLNVLALIEYA 180

Query: 176 LDFSEEEDVQNFS--SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           +DF+E+++         ++ + I      I+S +     G+IIR+G  IVI+G  N GKS
Sbjct: 181 VDFTEDDEDIVDDDLIAQIKDSITKTITRINSLLKNADEGKIIRDGLNIVIVGKPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N+L ++  AIVTDIPGTTRD++   ++L+G  +KI+DTAGIR+T+D VEK G++R+ 
Sbjct: 241 SLLNSLLREKRAIVTDIPGTTRDIIEEYINLDGIPIKITDTAGIRDTEDTVEKIGVERSK 300

Query: 294 LEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD------H 341
            ++E ADL++L+ + +       +  I    +  +I +  K DL    +EE         
Sbjct: 301 EKIEEADLVILMLDTSRALDDEDRVIIDAINDKKYIALLNKVDLECKLSEEVITSLNRTI 360

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR----YLEMASLNE 397
            IS+ TG G+E L  +IK++  N        I S+ RH   L +++      LE  +LNE
Sbjct: 361 EISAKTGFGIENLKEEIKNLFFNGEIDSESLIISNTRHKQALYRSLEDCNLALEKINLNE 420

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               LD+I+  +  A  +LG+ITG    E LL+ IFS+FC GK
Sbjct: 421 Y---LDLISIYITSAMRALGEITGDELEEDLLNKIFSEFCCGK 460


>gi|190171304|gb|ACE63722.1| ThdF [Cronobacter sakazakii]
          Length = 439

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 147/442 (33%), Positives = 231/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                    +    +  K+D+       S         +S+ T EG++
Sbjct: 299 TTDATDPAQIWPDFIARLSAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|190171346|gb|ACE63743.1| ThdF [Cronobacter turicensis]
 gi|190171348|gb|ACE63744.1| ThdF [Cronobacter turicensis]
          Length = 439

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/442 (33%), Positives = 232/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                 P  +    +  K+D+       S         +S+ T +G++
Sbjct: 299 TTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEHPGLSEVNGHSLIRLSARTSDGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L + +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRSHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|182678268|ref|YP_001832414.1| tRNA modification GTPase TrmE [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|205829118|sp|B2IJQ3|MNME_BEII9 RecName: Full=tRNA modification GTPase mnmE
 gi|182634151|gb|ACB94925.1| tRNA modification GTPase TrmE [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 451

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 170/436 (38%), Positives = 251/436 (57%), Gaps = 4/436 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDKG 64
           ETIFA ++G   SA++I+R+SGP    +   +     P PR+A+L       +G  LD+ 
Sbjct: 19  ETIFAPASGQGRSAVAIVRVSGPKAGFLLGALAG-YCPEPRRATLAILHDPENGEALDEA 77

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED AEFHVHGG AV+ G+L  L +   +R A PGEF+RRA  NGK+D
Sbjct: 78  LVLWFPGPKSFTGEDCAEFHVHGGRAVMAGLLAALGRFEQVRPAEPGEFTRRALLNGKLD 137

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LAD+I +ETE QRR ++  M G LS     W   L    S  EA++DFS+E DV
Sbjct: 138 LAEVEGLADMIEAETEWQRRQALRQMRGALSRQAEMWRQALLEALSLAEAEIDFSDEADV 197

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +S+ V   I  +  D+ + + Q + GE IR G  IVI+G  NAGKS+L NALA+++V
Sbjct: 198 PPETSRRVAALIEPVLADLRAELGQARAGERIREGLSIVIMGPPNAGKSTLLNALARREV 257

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV++I GTTRD++ + LDL+G  V ++DTAG+R+  D +E+ GI R +     ADL+L 
Sbjct: 258 AIVSEIAGTTRDLIEVHLDLKGCAVVLTDTAGLRDNADKIEQIGIARAYERGREADLVLW 317

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           L E  +         ++   + TK+D            IS+ +G  L  L+  I      
Sbjct: 318 LSEAEAPVAPPENLGMEVWPVFTKADRVEPLENREGLAISATSGLHLGRLVEAIADFAGK 377

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
                   + +  RH     +    L+      +   ++++AE+LRLA+ +L  +TG ++
Sbjct: 378 LAPSGHAGLITRARHRQAFERAAAALDRC--IREASPVELLAEDLRLAAQALLSLTGRIE 435

Query: 425 VEQLLDIIFSKFCIGK 440
            E++L  IF++FCIGK
Sbjct: 436 TEEILGEIFARFCIGK 451


>gi|225377579|ref|ZP_03754800.1| hypothetical protein ROSEINA2194_03229 [Roseburia inulinivorans DSM
           16841]
 gi|225210555|gb|EEG92909.1| hypothetical protein ROSEINA2194_03229 [Roseburia inulinivorans DSM
           16841]
          Length = 457

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 148/456 (32%), Positives = 237/456 (51%), Gaps = 23/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGL--DG-RI 60
           +TI A++T    S I I+R+SG     + + I   K +K      +    +G   DG  +
Sbjct: 4   DTIAAIATAMTSSGIGIVRISGDEAVSITDRIFEMKNQKKLEDMPTHTIHYGHIHDGDEV 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ ++++   P+S+T ED+ E   HGG+ V+  ILE + K    R A PGEF++RAF N
Sbjct: 64  IDEVMVVLMRGPKSYTREDTVEIDCHGGVYVMKRILETVIK-YGARPAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ D+I+S+ E   + S+  +SG +S    +    + H  +FIE+ LD  E
Sbjct: 123 GRIDLSQAESVIDVINSKNEFALKSSLSQLSGSVSEKIKEIRGNVLHEIAFIESALDDPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              +  +  +++   +  +   I   ++    G++++ G   VI+G  NAGKSSL N L 
Sbjct: 183 HISLDGYP-EKLSGIVSDVIKKIDKLLANSDNGKMLKEGISTVIVGKPNAGKSSLLNFLV 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   ++L G L+ I DTAGIR+T+D+VEK G++R    + NAD
Sbjct: 242 GEEKAIVTDIAGTTRDVLEEQINLNGILLNIIDTAGIRDTEDVVEKIGVERAKKYLNNAD 301

Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--------SSF 346
           L++ + +       N  + +   K+   I +  KSDL    T E             S+ 
Sbjct: 302 LVIYVVDTSTALDENDHEIMELLKDRHAIVLLNKSDLSPVTTVEDIRKHLDKKMISISAK 361

Query: 347 TGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDI 404
              G+++L   IK +    +         ++ RH   L + +R L +       D   D 
Sbjct: 362 EQTGMDDLEETIKEMFFSGEVTFNDEVYITNIRHKTSLQEALRSLHLVLQSIADDMPEDF 421

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +L  A   LG I G    + L++ IFSKFC+GK
Sbjct: 422 YSIDLMNAYEELGNIIGESVEDDLVNEIFSKFCMGK 457


>gi|220921039|ref|YP_002496340.1| tRNA modification GTPase TrmE [Methylobacterium nodulans ORS 2060]
 gi|219945645|gb|ACL56037.1| tRNA modification GTPase TrmE [Methylobacterium nodulans ORS 2060]
          Length = 434

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 171/437 (39%), Positives = 255/437 (58%), Gaps = 7/437 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDKG 64
           +TIFA ++G   +A++++R+SGP      E + ++  P PR+ SLR       G ILD+ 
Sbjct: 3   DTIFAPASGFGRAAVAVVRISGPGAAAALEALTRQPPPPPRRLSLRTLVAPGSGEILDRA 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+   P+P +FTGEDS E  +HGG AV   +L  LA +P L  A PG F+RRAF NG++D
Sbjct: 63  LVAWMPAPGTFTGEDSVELQLHGGPAVRAAVLRALAHLPGLAPAEPGAFTRRAFLNGRMD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR +M  + G LS L   W   L  + +  EA LDFS+E DV
Sbjct: 123 LTEVEGLADLIDAETEAQRRQAMRQLDGALSRLVEDWRATLLDVLAMTEAALDFSDEGDV 182

Query: 185 QNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
              + +   L     +++ I S ++ G+ GE +R G  +V+ G  NAGKS+L NALA++D
Sbjct: 183 DAETLTTAGLAAATRVRDGILSALANGRRGERLREGLMVVLAGAPNAGKSTLLNALARRD 242

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV+ IPGTTRD + +  DL G  V + DTAG+RE+ D +E EG+ R+   + +ADL+L
Sbjct: 243 AAIVSAIPGTTRDAIEVRCDLGGLPVMLVDTAGLRESVDAIEVEGMARSRRRIADADLVL 302

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
            L       E         + + TK+DL S    +    IS+ TG+GL+ L+++I+    
Sbjct: 303 WLVPPEGSGETPPA---GALVVRTKADLSSPSPGD-GLAISALTGQGLDALLDRIEVSAQ 358

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
               +   ++ + +R    L     +L+ A         +++AE+LRLA  +LG++ G V
Sbjct: 359 AALGQGD-AVVTRERQRLALESCAEHLDRAIAGAASLPAELVAEDLRLAVRALGEVAGRV 417

Query: 424 DVEQLLDIIFSKFCIGK 440
            VE++LD +F+ FCIGK
Sbjct: 418 GVEEMLDRLFASFCIGK 434


>gi|323705843|ref|ZP_08117415.1| tRNA modification GTPase TrmE [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534839|gb|EGB24618.1| tRNA modification GTPase TrmE [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 458

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 156/458 (34%), Positives = 242/458 (52%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD--- 57
            +TI A+ST      ISIIR+SG    ++   I K K+       +  ++ Y F  D   
Sbjct: 3   DDTIAAISTPIGEGGISIIRISGNDAVKIASSIFKAKRNIDLNSVKSHTVHYGFIYDRKN 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I D+ L+ V  SP ++T ED  E + HGG      ILE L      RLA PGEF++RA
Sbjct: 63  DEIYDEVLVNVMKSPHTYTKEDVVEINCHGGYIPAKRILE-LVLRNGARLAEPGEFTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++D+ +AE++ D+I S+T++  + ++  + G +     +  + L  + + I A +D
Sbjct: 122 FLNGRLDISQAEAVIDIIRSKTDLSNKYALMQLKGSVKDKITKIKNDLVALIAHIFALMD 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E EDV+ F+  E+++ I    +DI   +   + G IIR G    I+G  N GKSSL N
Sbjct: 182 FPE-EDVELFNDDELIDGINKSISDIDEILKTSEKGRIIREGLNTAIIGKPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  ++ AIVTDIPGTTRD++   L ++G  + + DTAGIR+TD+IVE+ G++R+   ++
Sbjct: 241 ALLNENRAIVTDIPGTTRDIIEEHLSIKGIPINLIDTAGIRQTDEIVERIGVERSREAID 300

Query: 298 NADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYT-EEYDH-------LI 343
            ADLI+ + + +   E      +   +N   ++I  K DL S    +E D         +
Sbjct: 301 KADLIMFIFDSSRPLEKDDYDILKLIENKKVLYILNKIDLPSAIDIDEVDKLSGGKYVKL 360

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR-YLEMASLNEKDCGL 402
           SSFT EGL+ L N + +I+          + ++ RH   L +     L      E     
Sbjct: 361 SSFTKEGLDILENTVYNIVMVDGLSHDEFLLTNMRHKDALIKAKENLLSCLRTIESGLTE 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D ++ +L  A   LG ITG    E L++ IF +FC+GK
Sbjct: 421 DFVSIDLNAAIDHLGLITGETANEDLINEIFERFCVGK 458


>gi|190171352|gb|ACE63746.1| ThdF [Cronobacter turicensis]
          Length = 439

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/442 (33%), Positives = 232/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                 P  +    +  K+D+       S         +S+ T +G++
Sbjct: 299 TTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGLSEVNGHSLIRLSARTSDGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L + +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRSHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|326569041|gb|EGE19110.1| tRNA modification GTPase TrmE [Moraxella catarrhalis BC1]
          Length = 466

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 163/461 (35%), Positives = 255/461 (55%), Gaps = 31/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG   +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   + N +  +   I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LSDGIIENKLTEILLGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307

Query: 307 EINSKKEISFPKN----------------IDFIFIGTKSDLY----------STYTEEYD 340
           ++ ++ +     +                   I +  KSDL            T +    
Sbjct: 308 DLTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLVSKPVLQVSCETKSVPKL 367

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKD 399
             +S  TGEGL+ELI  +   +   F     S+ +  RHL  L++   Y +E        
Sbjct: 368 VYVSCETGEGLDELIEILTQKV--GFHPPENSLIARTRHLDALNRAKGYAIEAYEQLTIY 425

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +++AE+LR +  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 426 HAGELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466


>gi|288554601|ref|YP_003426536.1| tRNA modification GTPase TrmE [Bacillus pseudofirmus OF4]
 gi|288545761|gb|ADC49644.1| tRNA modification GTPase TrmE [Bacillus pseudofirmus OF4]
          Length = 456

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 150/457 (32%), Positives = 246/457 (53%), Gaps = 22/457 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR--YFFGLDGRI- 60
           E +TI A+ST     AI I+RLSG     + + I K  KP    AS    Y + +DG   
Sbjct: 2   EFDTIAAISTALGEGAIGIVRLSGDEAVAIADKIYKGAKPLSEAASHTIVYGYIMDGETR 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ +  +P +FT ED  E + HGG+  VN +L+ LA     RLA PGEF++RAF N
Sbjct: 62  VEEAMVSIMRAPRTFTREDVVEINCHGGLVSVNKVLK-LALKHGARLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE + DLI ++T+    +++  + G LS         L    + +E ++D+ E
Sbjct: 121 GRIDLSQAEGVMDLIRAKTDKAMNVALGQVEGRLSKKIAILRQALLETVASVEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D +  +   ++    F++ +I   +     G+I+R G   VI+G  N GKSSL N+L 
Sbjct: 181 Y-DAEVVTHDLLIEKANFVEREIDKLLGTANQGKILREGLSTVIVGRPNVGKSSLLNSLV 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDV+   +++ G  +++ DTAGIRET+D+VE+ G++R+   ++ A+
Sbjct: 240 HEEKAIVTDIAGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDMVERIGVERSRQVLKEAE 299

Query: 301 LILLLK----EINSKKEISFP--KNIDFIFIGTKSDLYSTYT---------EEYDHLISS 345
           LILL+     E++S+ E  F   K+++ I I  K+D+                     S 
Sbjct: 300 LILLVLNYGEELSSEDEALFEAVKHLNVIVIVNKTDVEQKIDLNRVRELAEGRPVVTTSL 359

Query: 346 FTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
              EG++EL + I S+      +    +  S+ RH+  L Q    ++ A S  +    +D
Sbjct: 360 IKDEGVDELESAIASLFFEGDLESGDATYVSNSRHIALLEQAKSTIQDAKSAIDMGVPID 419

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  ++      LG+I G    E L+D +FS+FC+GK
Sbjct: 420 LVQIDITRTRELLGEIIGDSVHESLIDQLFSQFCLGK 456


>gi|206558831|ref|YP_002229591.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia J2315]
 gi|198034868|emb|CAR50740.1| putative tRNA modification GTPase [Burkholderia cenocepacia J2315]
          Length = 464

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/466 (33%), Positives = 243/466 (52%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  +K  PR AS   F  
Sbjct: 2   LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCG-QKLAPRHASYVPFLD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 61  AHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPE-EEIDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIART 299

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +        +      FP  +  + +  K+DL          +   
Sbjct: 300 WSEIERADVVLHLLDSRTGMTADDETIAARFPAGVPVVRVLNKTDLTGVPACVEHPAAEG 359

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
           +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+  
Sbjct: 360 DLTEVHLSAKRGDGIDMLRAELLRIAGWQAG-AEGVYLARERHLIALRAAQEHLAQAADH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|192288728|ref|YP_001989333.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris TIE-1]
 gi|226704785|sp|B3Q8A8|MNME_RHOPT RecName: Full=tRNA modification GTPase mnmE
 gi|192282477|gb|ACE98857.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris TIE-1]
          Length = 441

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 169/445 (37%), Positives = 251/445 (56%), Gaps = 9/445 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA++TG LPSAI+I+R+SG     V   +     P PR+A        DG +
Sbjct: 1   MHPSDQTIFALATGPLPSAIAILRVSGSRAGDVLRALTGS-LPPPRRAVRCDLRSRDGDL 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + FP+P S TGED AE H+HG  AV   +++ L+    +R A PGEF+RR FEN
Sbjct: 60  IDDGVALWFPTPASATGEDVAELHIHGSRAVAAALIKTLSAFEGVRPAEPGEFTRRGFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++T+ QRR ++  + G L     QW D++    + +EA +DFS+
Sbjct: 120 GKLDLTEAEGLDDLIHADTDAQRRQALRQLGGVLGDRARQWRDQIIEALALVEAGIDFSD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV +         I  L  +I+  +++   GE +R+G  + I G  N GKS+L N LA
Sbjct: 180 EGDVADELMGPARAKIAELSAEIAEVLAEQGRGEKLRDGMVVAIAGPPNVGKSTLINRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRDV+ I LDL+GY V + DTAG+R++DD VE+EG++R  L    AD
Sbjct: 240 RREVAIVSPHAGTTRDVIEIQLDLDGYPVTVIDTAGLRDSDDPVEQEGVRRARLRAAAAD 299

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEGLEELI 355
           L+L L       +    K  +   +  K DL       +   +    IS+ TGEG  +L+
Sbjct: 300 LVLWLSTATDASDPDV-KGPEVWRVRNKIDLANGEVAESGPSQPVFRISAATGEGFADLL 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
            ++    +  F      + +  RH   L+     L  + +       +I+AE LR ++ S
Sbjct: 359 RELTRFAAQYFGSAEAGLITRDRHRRLLADAAASLTRSLVP--GLAEEIVAEELRASAHS 416

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG++ G VDVE +L  IF +FCIGK
Sbjct: 417 LGRLLGRVDVEDVLGEIFGRFCIGK 441


>gi|118602976|ref|YP_904191.1| tRNA modification GTPase TrmE [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|166234818|sp|A1AXR3|MNME_RUTMC RecName: Full=tRNA modification GTPase mnmE
 gi|118567915|gb|ABL02720.1| tRNA modification GTPase trmE [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 447

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 163/451 (36%), Positives = 255/451 (56%), Gaps = 15/451 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  + TI A+++G     I ++R+SGP C  + + +     P PR A    FF  +   
Sbjct: 1   MNSSETTICALASGVCKGGIGVVRVSGPLCKVIAKKMLGF-VPKPRYAHYGLFFDQENDE 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +DKG+ + FP P SFTGED  EF  HGG++V+  +LE +  M   + A+PGEFS+RAF N
Sbjct: 60  IDKGIALFFPKPHSFTGEDILEFQGHGGMSVMCCLLESVISM-GAKPADPGEFSKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK++L++AE++AD+I++ ++   + +   +SGE S+        +  +R F+EA +DFS+
Sbjct: 119 GKMNLVQAEAVADMINANSKRASKSAFRSLSGEFSNQVNALTKSIVELRVFVEATIDFSD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++     ++V      +K  + + +     G I+R G  +VI G  NAGKSSL NAL 
Sbjct: 179 -EEIDFLQFEQVKLKAKGIKQAVETILKSATQGVILREGLNVVIAGKPNAGKSSLLNALT 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++  AIVTDI GTTRDVL   + + G  + I DTAG+ ++DD +EKEGIKR   E+E AD
Sbjct: 238 QESSAIVTDIAGTTRDVLKETICVNGMPLNIIDTAGLHDSDDKIEKEGIKRAHFEIERAD 297

Query: 301 LILLLKEINSKKEI--SFPKNID---FIFIGTKSDLYSTYTEE------YDHLISSFTGE 349
           ++L++ +    K      PKNID    + I  K DL S   ++          IS+   +
Sbjct: 298 VVLMVFDAQDDKPDFSILPKNIDDQPLLLIKNKVDLISGAVKKEMINNIVQLSISAKHSK 357

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           G+E L  ++  I           + S KRH+  L +++  ++ A +  ++  ++++AE+L
Sbjct: 358 GMELLRKELSDIA-GLEDFSEGVVLSRKRHIIALEESLASIDNAIMQLENGVVELMAEDL 416

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R A   +G ITG    + LL  IFS FCIGK
Sbjct: 417 RFAGQFMGSITGEFSSDDLLGEIFSSFCIGK 447


>gi|75908210|ref|YP_322506.1| tRNA modification GTPase TrmE [Anabaena variabilis ATCC 29413]
 gi|123758831|sp|Q3MBM5|MNME_ANAVT RecName: Full=tRNA modification GTPase mnmE
 gi|75701935|gb|ABA21611.1| tRNA modification GTPase trmE [Anabaena variabilis ATCC 29413]
          Length = 463

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 155/458 (33%), Positives = 237/458 (51%), Gaps = 28/458 (6%)

Query: 7   TIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
           TI A++T       ++ I+R+SG     + + +           S R  +G        +
Sbjct: 10  TIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFH-APGKQVWESHRILYGYIRHPQTRQ 68

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ RAF 
Sbjct: 69  IVDEALLLLMKAPRSYTREDVVEFHCHGGIMAVQQVLQ-LCLEGGARLAQPGEFTLRAFL 127

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AES+ADL+ + +    + ++ G+ G+L+    Q       I + IEA +DF 
Sbjct: 128 NGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARIDFE 187

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  D+     +++++DI  +  +IS  ++    GE++R G K+ I+G  N GKSSL NA 
Sbjct: 188 E--DLPPLDDEKIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAW 245

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIRET D VEK G++R+      A
Sbjct: 246 SQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTA 305

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTY---TEEYDH------LIS 344
           DL+LL  +         ++     K+   I +  K DL       + EY          +
Sbjct: 306 DLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVDKKLITSLEYPKNITQIVHTA 365

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGL 402
           +   +G++ L   I  I+   K K     +  ++R    L+Q    LE       +   L
Sbjct: 366 AAQKQGIDALETAILEIVQTGKVKAADMDLAINQRQAAALTQAKISLEQVQATITQQLPL 425

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 426 DFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 463


>gi|39933372|ref|NP_945648.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris CGA009]
 gi|81829794|sp|Q6ND14|MNME_RHOPA RecName: Full=tRNA modification GTPase mnmE
 gi|39652997|emb|CAE25739.1| putative GTPase involved in synthesis of
           5-methylaminomethyl-2-thiouridine, found in the wobble
           position of some tRNA's [Rhodopseudomonas palustris
           CGA009]
          Length = 441

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 167/445 (37%), Positives = 251/445 (56%), Gaps = 9/445 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA++TG LPSAI+I+R+SG    +V   +     P PR+A        DG +
Sbjct: 1   MHPSDQTIFALATGPLPSAIAIVRVSGSRAGEVLTALTGS-LPPPRRAVRCDLRSRDGDL 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + FP+P S TGED AE H+HG  AV   +++ L+    +R A PGEF+RR FEN
Sbjct: 60  IDDGVALWFPTPASATGEDVAELHIHGSRAVAAALIKTLSAFEGVRPAEPGEFTRRGFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++T+ QRR ++  + G L     +W D++    + +EA +DFS+
Sbjct: 120 GKLDLTEAEGLDDLIHADTDAQRRQALRQLGGVLGDRARRWRDQIIEALALVEAGIDFSD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV +         I  L  +I+  +++   GE +R+G  + I G  N GKS+L N LA
Sbjct: 180 EGDVADELMGPARAKIAELSAEIAEVLAEQGRGEKLRDGMVVAIAGPPNVGKSTLINRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRDV+ I LDL+GY V + DTAG+R++DD VE+EG++R       AD
Sbjct: 240 RREVAIVSPHAGTTRDVIEIQLDLDGYPVTVIDTAGLRDSDDPVEQEGVRRARSRAAAAD 299

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEGLEELI 355
           L+L L       +    K  +   +  K DL       +   +    IS+ TGEG  +L+
Sbjct: 300 LVLWLSTATDASDPDV-KGPEVWRVRNKIDLATGEVAESGPSQPVFRISAATGEGFADLL 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
            ++    +  F      + +  RH   L+     L  + +       +I+AE LR ++ S
Sbjct: 359 RELTRFAAQYFGSAEAGLITRDRHRRLLADAAASLTRSLVP--GLAEEIVAEELRASAHS 416

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG++ G VDVE +L  IF +FCIGK
Sbjct: 417 LGRLLGRVDVEDVLGEIFGRFCIGK 441


>gi|222112656|ref|YP_002554920.1| tRNA modification gtpase trme [Acidovorax ebreus TPSY]
 gi|221732100|gb|ACM34920.1| tRNA modification GTPase TrmE [Acidovorax ebreus TPSY]
          Length = 467

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 160/469 (34%), Positives = 240/469 (51%), Gaps = 32/469 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     + + +C +    PR+A+   F    G+ 
Sbjct: 2   LPRHSDPIVAIATAPGRGAVGIVRVSGKQIGALVQALCGRAL-KPREATYLPFRDAAGQA 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------PNLRLANPGEFS 114
           +D+GL + FP+P S+TGED  E   HGG  V+  +L    +         LRLA PGEF+
Sbjct: 61  IDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAATGGVLDRLRLAEPGEFT 120

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF N KIDL +AE++ADLI + TE   R +   +SG+ S       D L H+R  +EA
Sbjct: 121 ERAFLNNKIDLAQAEAIADLIDASTEAAARGASRSLSGDFSREIHTLRDALVHLRMLVEA 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LDF E E++      +    +  L+  ++  + +   G ++R G K+VI G  NAGKSS
Sbjct: 181 TLDFPE-EEIDFLRKADARGQLSNLQQSLARVMQRAGQGALLREGIKVVIAGQPNAGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+RE+DD VE+ GI R + 
Sbjct: 240 LLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESDDEVERIGIARAWD 299

Query: 295 EVENADLILLLKEI---------NSKKEIS------FPKNIDFIFIGTKSDLYSTYT--- 336
           E+  AD +L L ++         +    I+       P  +  + +  K+D         
Sbjct: 300 EIAGADAVLFLHDLTRWGSAQYQDDDAAIAHTLSTRLPAGVPVVDVWNKADAAPQAAAPA 359

Query: 337 ---EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--E 391
              E    L+S+ TG+GL+ L  ++  I   +         +  RH+  L     +L   
Sbjct: 360 REGESQAVLLSARTGQGLDTLRRQLLQIAGWQ-SAAEGVYIARARHIEALRAVDAHLMEA 418

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A L      LD++AE LRLA  +L  ITG    + LL +IFS FCIGK
Sbjct: 419 AAQLESDGPALDLLAEELRLAQNALNTITGEFTSDDLLGVIFSSFCIGK 467


>gi|303240051|ref|ZP_07326572.1| tRNA modification GTPase TrmE [Acetivibrio cellulolyticus CD2]
 gi|302592320|gb|EFL62047.1| tRNA modification GTPase TrmE [Acetivibrio cellulolyticus CD2]
          Length = 460

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 157/462 (33%), Positives = 251/462 (54%), Gaps = 24/462 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           M + ++TI A+ST      I IIRLSG   F++ E I + KK F +  +    +G     
Sbjct: 1   MLYNEDTITAISTPHGNGGIGIIRLSGERAFEISEGIFQGKKDFDKVKTHTINYGKIIDS 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G +LD+ L+     P +FT ED  E + HGG  V+  ILE + K    RLA PGEF++
Sbjct: 61  STGEVLDEVLISKMCKPNTFTREDVVEINCHGGTVVLKNILELILK-KGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI+++T    + +++ + G+LS    +   KL  + + IE  
Sbjct: 120 RAFLNGRIDLSQAEAVIDLINAKTNESSKAAVDQLEGKLSVKLKEARSKLIELIAHIEVT 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E  D++  + +++  +I  +K  +SS I   + G IIR G   VI+G  N GKSSL
Sbjct: 180 VDYPEH-DIEEITGQKIYTEIKDIKEKLSSIIEGFEKGRIIREGINAVIVGRPNVGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  K  AIVTDIPGTTRD++   ++L G  V+I DTAGIRET+D+VEK G+++T  E
Sbjct: 239 LNELTGKSRAIVTDIPGTTRDIIEDYINLNGVPVRIIDTAGIRETEDVVEKIGVEKTHKE 298

Query: 296 VENADLILLLKEINS---KKEISFPK---NIDFIFIGTKSDLYS---------TYTEEYD 340
           V++ADLI+++ + +    +++I           I I  K D+ S             +  
Sbjct: 299 VDSADLIIMMIDADQGVNQEDIDILNKIKEKKAIIILNKIDMVSEDKILDIENKLGNKNV 358

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMAS-LNEK 398
             +S     G  +L N +  +       +    + ++ RH   + + +  ++ A   +E 
Sbjct: 359 IRMSLKEDVGTADLGNAVVELFMKGEVSINNEVLITNIRHKNLIDKAIESIDFAIGAHES 418

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LD+I  ++  ++  LG+ITG    E ++  IFS+FC+GK
Sbjct: 419 GMPLDMITIDIVNSAQYLGEITGESVSEDVMHEIFSRFCLGK 460


>gi|254246829|ref|ZP_04940150.1| hypothetical protein BCPG_01599 [Burkholderia cenocepacia PC184]
 gi|124871605|gb|EAY63321.1| hypothetical protein BCPG_01599 [Burkholderia cenocepacia PC184]
          Length = 464

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/466 (33%), Positives = 243/466 (52%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPS-CFQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  +K  PR AS   F  
Sbjct: 2   LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEATALPLIDALCG-QKLAPRHASYVPFLD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 61  AHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPE-EEIDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIART 299

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +        +      FP  +  + +  K+DL          +   
Sbjct: 300 WSEIERADVVLHLLDSRTGMTADDETIAARFPAGVPVVRVLNKTDLTGVPACVEHPAAEG 359

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
           +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+  
Sbjct: 360 DLTEVHLSAKRGDGIDMLRAELLRIAGWQAG-AEGVYLARERHLIALRAAQDHLAQAADH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|326571815|gb|EGE21821.1| tRNA modification GTPase TrmE [Moraxella catarrhalis BC7]
          Length = 466

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 161/461 (34%), Positives = 254/461 (55%), Gaps = 31/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A+++      + IIRLSG   +++   + ++    PR A    F+G +G ++D+G++
Sbjct: 10  TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAHFGGFYGQEG-VIDEGVI 68

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F +P SFTGED  E   HGG+ + N +L  + ++   R A  GEFS RAFEN KIDL+
Sbjct: 69  IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D IS+ +  Q   ++  ++GE S    + +DKL H+R ++EA +DF EEEDV  
Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                + N +  + + I   ++  K G+++R+G  +V+ G  NAGKSSL N L+  + AI
Sbjct: 188 LPDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD L   L L G  V ++DTAG+R+TDD VEK GIKR F  +  AD+++++ 
Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307

Query: 307 EINSKKEISFPKN----------------IDFIFIGTKSDLY----------STYTEEYD 340
           ++ ++ +     +                   I +  KSDL            T +    
Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLISKPVLQVSCETKSAPKL 367

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKD 399
             +S  TGEGL+ELI  +   +   F     S+ +  RHL  L++   Y +E        
Sbjct: 368 VYVSCETGEGLDELIEILTQKV--GFHPPENSLIARTRHLDALNRAKGYAIEAYEQLTIY 425

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +++AE+LR +  +LG+I G +  ++LL  IFS FCIGK
Sbjct: 426 HAGELVAESLRQSQQALGEIIGQMSADELLGKIFSSFCIGK 466


>gi|134297397|ref|YP_001121132.1| tRNA modification GTPase TrmE [Burkholderia vietnamiensis G4]
 gi|205829126|sp|A4JJ44|MNME_BURVG RecName: Full=tRNA modification GTPase mnmE
 gi|134140554|gb|ABO56297.1| tRNA modification GTPase trmE [Burkholderia vietnamiensis G4]
          Length = 464

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 151/465 (32%), Positives = 239/465 (51%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T A    I ++R+S    G +  Q        ++  PR AS   F   
Sbjct: 2   LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAAQALSDALCGQRLAPRHASYVPFVDA 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGEF
Sbjct: 62  HGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   +    S      ++ +  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDSAFSRQIHALVEDVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPE-EEIDFLEAADARGKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTW 300

Query: 294 LEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYTE 337
            E+E AD++L L +        +      FP  +  + +  K+DL          +   +
Sbjct: 301 SEIERADVVLHLLDSRTGMTPEDETIAARFPDGVPVVRVLNKTDLTGVPACVEHPAAAGD 360

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--L 395
             +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+   
Sbjct: 361 LTEVHLSAKRGDGIDMLRAELLRIAGWQAG-AEGVYLARERHLIALRAAQEHLAQAADHA 419

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 EQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|153956503|ref|YP_001397268.1| tRNA modification GTPase TrmE [Clostridium kluyveri DSM 555]
 gi|189036197|sp|A5N451|MNME_CLOK5 RecName: Full=tRNA modification GTPase mnmE
 gi|146349361|gb|EDK35897.1| TrmE [Clostridium kluyveri DSM 555]
          Length = 459

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 151/459 (32%), Positives = 263/459 (57%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFGLD-- 57
           E +TI A++T      ISIIR+SG +   +   I + K        +  S+RY F ++  
Sbjct: 3   EFDTITAIATVLGEGGISIIRISGENSLSIANSIFRGKNHRDLLDIKPYSMRYGFIIEKD 62

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G ILD+ L+     P+S+T ED  E + HGG+     ++EE+ K    RLA PGEF++R
Sbjct: 63  TGEILDEVLVSFMKGPKSYTAEDIVEINCHGGVLATRKVMEEVIKA-GARLAEPGEFTKR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ D+I +++ +  + +++   G++S       ++L  I + IEA +
Sbjct: 122 AFLNGRIDLSQAEAVIDIIRAKSHISVKSAVQQSQGKISKEINLLREELLEIIAHIEATV 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           ++ E ED++  +S ++   I  + ++I+  +S  + G+I+R G  +VI+G  N GKSSL 
Sbjct: 182 NYPE-EDLEEMTSDQIYLKINKILDEINYILSNAEEGKIVREGLSVVIVGKPNVGKSSLL 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +++ AIVTDIPGTTRDV+   +++ G  +KI DTAGIR+TDDIVEK G++++  ++
Sbjct: 241 NSLIEENKAIVTDIPGTTRDVIEEYMNIGGIPIKIVDTAGIRKTDDIVEKIGVEKSKEKI 300

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY--------TEEYDHL 342
           + +DL++L+ + +       K+ I++  +  +I +  K+D+               +   
Sbjct: 301 DESDLVILMLDSSKELDEEDKEIINYVNHRKYIILLNKTDIGDKIDLNDICNLNSRFIIK 360

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCG 401
            S   GEGL+++ N IK +      K      ++ RH   L +     +E     +    
Sbjct: 361 TSIKNGEGLDKIKNCIKELFFKGEIKSEDLFITNTRHKEGLIRAKESCIEALQTLKSTLS 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D+++ +++ A ++LGKITG    E ++D IFS+FC+GK
Sbjct: 421 IDLVSIDIKNAWINLGKITGDTLEEDIIDKIFSQFCLGK 459


>gi|311109664|ref|YP_003982517.1| tRNA modification GTPase TrmE [Achromobacter xylosoxidans A8]
 gi|310764353|gb|ADP19802.1| tRNA modification GTPase TrmE [Achromobacter xylosoxidans A8]
          Length = 450

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/439 (36%), Positives = 238/439 (54%), Gaps = 17/439 (3%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESF 75
               I ++R+SG    ++   + +++   PR A    F    G +LD+G+ I F +P S+
Sbjct: 15  GRGGIGVVRISGTDLSELVRRLFQREL-TPRHAHYLPFKSGAGELLDEGIAIYFRAPHSY 73

Query: 76  TGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
           TGED  E   HGG AV+  +LE      +  ++RLA PGEF+RRAF N ++DL +AE++A
Sbjct: 74  TGEDVLELQGHGGPAVLRRVLESCLAAGRDLDIRLAEPGEFTRRAFLNDRMDLAQAEAVA 133

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +    R +M  +SG+ S+      D++ H+R  +EA LDF E E++      + 
Sbjct: 134 DLIEASSVAAARGAMASLSGDFSARVNDLSDRIIHLRMLVEATLDFPE-EEIDFLEKYQA 192

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  L  D+S  I+Q + G I+R G  +V+ G  N GKSSL NALA  D+AIVT I G
Sbjct: 193 RPTLEALTADLSKLIAQARQGVILREGLHVVLAGQPNVGKSSLLNALAGDDIAIVTPIAG 252

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRD +  ++ ++G  + I DTAG+RET+D VE  GI RT+ E+E AD+IL L++     
Sbjct: 253 TTRDKVVQEIHIDGVPLHIVDTAGLRETEDTVESIGIARTWQEIERADVILHLQDATQPG 312

Query: 313 E-------ISFPKNIDFIFIGTKSDLYST--YTEEYDHLISSFTGEGLEELINKIKSILS 363
           +          P     + +  K DL ST       +  IS+  G GL+EL  ++  I  
Sbjct: 313 DELDAQITARLPPRTPVLKVFNKVDLLSTPFAAGPQELGISAKRGAGLDELRAELLRIA- 371

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITG 421
                      + +RHL+ L     +LE+A  + +     LD+ AE LRLA  SL  ITG
Sbjct: 372 GWNPGGESPWLARERHLHALQDAAEHLELAGAHAEQDDRVLDLFAEELRLAHDSLSSITG 431

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               + LL  IFS FCIGK
Sbjct: 432 KFTSDDLLGEIFSSFCIGK 450


>gi|190171246|gb|ACE63693.1| ThdF [Escherichia hermannii]
          Length = 438

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 148/441 (33%), Positives = 235/441 (53%), Gaps = 21/441 (4%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFP 70
            +T      + I+R+SG     V + +   K P PR A    F  +D   LD+G+ + FP
Sbjct: 1   QATHPGRGGVGILRISGLKARDVAQAVLG-KLPKPRYADYLPFRDVDNTALDQGIALWFP 59

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
            P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE+
Sbjct: 60  GPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEA 119

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF + E++   S  
Sbjct: 120 IADLIDASSEQAARSALNSLQGAFSTRVNQLVEALTHLRIYVEAAIDFPD-EEIDFLSDG 178

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI
Sbjct: 179 KIEAQLNDVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDI 238

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +
Sbjct: 239 AGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTT 298

Query: 311 KKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEE 353
                            P+ +    +  K+D+       S         +S+ TG G++ 
Sbjct: 299 TDATDPAAIWPDFIARLPQKLPITVVRNKADITGEPQGLSEVNGHSLIRLSARTGNGVDV 358

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLA 412
           L + +K  +      +     + +RHL  L    ++LE            +++AE LRLA
Sbjct: 359 LRDHLKHSMGFD-TNMEGGFLARRRHLQALENAAQHLEQGKAQLLGAWAGELLAEELRLA 417

Query: 413 SVSLGKITGCVDVEQLLDIIF 433
             SL +ITG    + LL  IF
Sbjct: 418 QQSLSEITGEFTSDDLLGRIF 438


>gi|85858983|ref|YP_461185.1| tRNA synthase [Syntrophus aciditrophicus SB]
 gi|123516272|sp|Q2LSF6|MNME_SYNAS RecName: Full=tRNA modification GTPase mnmE
 gi|85722074|gb|ABC77017.1| tRNA synthase [Syntrophus aciditrophicus SB]
          Length = 457

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/458 (31%), Positives = 244/458 (53%), Gaps = 25/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP----FPRKASLRYFFGLD-GR 59
           K+TI A++T A    I I+R+SG     +   + K         PR            G+
Sbjct: 3   KDTIAAIATPAGTGGIGIVRISGSEAASILNLLFKSSHSVTLFKPRYLYHGDLSDPQTGQ 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ L+ +  +P S+TGED+ E + HGGI V+  +L  + +    RLA+PGEF+RRAF 
Sbjct: 63  VIDEVLVSLMKAPRSYTGEDTLEIYCHGGILVLESVLLAVLRS-GARLADPGEFTRRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N +IDL +AE++ D+I + T      ++  + G+L        D+L  ++  +E+ +DF+
Sbjct: 122 NDRIDLTQAEAVGDVIMARTSKGLEAAVSHLKGQLKQKIDSLRDELIDVQVLLESAIDFT 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  DV+  S  EVL+ +  L +D+ + +S    G++ R+G  +VI G  N GKSSL N L
Sbjct: 182 E--DVEFPSPSEVLSKLERLSSDLEALLSTYDQGKVYRHGATVVIAGKPNTGKSSLLNCL 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVT +PGTTRD +   + ++G  V++ DTAGI  TDD++E EGI+  + ++  A
Sbjct: 240 LQEKRAIVTPVPGTTRDFIEEAISIQGVSVRMIDTAGIHPTDDLIECEGIRMVWEKLATA 299

Query: 300 DLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LIS 344
           D ++LL + +       +K +   +  + + +  K+DL  +  EE             +S
Sbjct: 300 DGVILLLDGSKDLTDEDRKILKRLQGYNLLPVINKADLDHSLKEEDIIACFPGTDPLWVS 359

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLEMASLN-EKDCGL 402
           +  GEG+  L  KI  ++  K  +    +  +  RH   L +T + +  A  + ++    
Sbjct: 360 AKFGEGIAVLKEKIYDLVLEKAGEQDGDVLINSLRHKMALEKTRQQVSQALASLQEGLSQ 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  A ++R A  +LG+I G    E +LD IFS FCIGK
Sbjct: 420 EFAALDIREALEALGEIAGETVTEDILDRIFSSFCIGK 457


>gi|295693883|ref|YP_003602493.1| tRNA modification GTPase mnme [Lactobacillus crispatus ST1]
 gi|295031989|emb|CBL51468.1| tRNA modification GTPase mnmE [Lactobacillus crispatus ST1]
          Length = 461

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 141/461 (30%), Positives = 240/461 (52%), Gaps = 24/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST      ISI+R+SG    ++ + + K +    +  +    +G     
Sbjct: 4   ILTEFDTIAAISTPIGEGGISIVRMSGEDAIKIADEVFKGED-LSKVPTHTIHYGHIIDP 62

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G+ +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++
Sbjct: 63  DTGKTIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQ-LLLSHGARMADPGEFTK 121

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AES+ D++ ++T+  R++++  ++G L         ++ +  + +E +
Sbjct: 122 RAFVNGRIDLTQAESVMDIVRAKTDKARQVAIGQLAGGLLHKIQAMRQEILNTLANVEVN 181

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E  D    ++K++ +    + + I+  +   + G+I+RNG    I+G  N GKSSL
Sbjct: 182 IDYPEY-DADTVTAKQMADTSRSVIDKINRLLKTAQEGKILRNGLATAIVGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  T+D VEK G++R+   
Sbjct: 241 LNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVERSKKA 300

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDH 341
           +E ADL+LLL + +       +  I   K+   I I  KSDL            T     
Sbjct: 301 LERADLVLLLIDASQALTAEDQALIEATKDKKRIVILNKSDLGQKITTTEMEKLTGSDVI 360

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S    + L+ L   I  +     +     I  +++R    L +  + LE      E  
Sbjct: 361 STSILKEQNLDALEELINKLFFAGIENSNDQIMVTNQRQASLLHKAKKELEDVIQAVEDG 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 421 VPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|91777105|ref|YP_546861.1| tRNA modification GTPase TrmE [Methylobacillus flagellatus KT]
 gi|123078704|sp|Q1GXL7|MNME_METFK RecName: Full=tRNA modification GTPase mnmE
 gi|91711092|gb|ABE51020.1| tRNA modification GTPase trmE [Methylobacillus flagellatus KT]
          Length = 446

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 159/448 (35%), Positives = 246/448 (54%), Gaps = 19/448 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      I ++R+SGPS   + E +     P PR A+   F      ++D+G+
Sbjct: 5   DTIAAIATAPGSGGIGVVRISGPSSRLIAEAVLGHCPP-PRHAAYLAFRDAHALLIDRGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I +P P S+TGED  E   HGG A++  +L+   ++   R A PGEF+RRA+ N K+DL
Sbjct: 64  AIYYPGPHSYTGEDVLELQAHGGPALMQILLKRCLEL-GARQAEPGEFTRRAYLNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++AD+I++ TE   R ++  +SGE S+       KL  +R ++EA LDF E ED+ 
Sbjct: 123 AQAEAVADVINAATEAAARSAVRSLSGEFSARIHSLQQKLVDLRLYVEACLDFPE-EDID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S   V   +  +   + +   + + G ++R G ++V++G  N GKSSL N LA ++VA
Sbjct: 182 FISQGRVAEKLAEVTAGLEAVFREARQGNLLREGLQVVLVGQPNVGKSSLMNQLAGEEVA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT I GTTRD +   + + G  + I+DTAG+RET+D VE+ GI RT+  +ENA + LLL
Sbjct: 242 IVTPIAGTTRDTIKNSIQINGITLHITDTAGLRETNDEVEQHGIARTWRALENAGVALLL 301

Query: 306 KE-------INSKKEISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGEGLE 352
            +       +        P+ +  I+I  K DL ST  +      E    +S+ TG+G+ 
Sbjct: 302 VDAAHGIGKVEKSILARLPQFLPKIWIHNKIDLESTPPKIEEQDGETHIHLSARTGDGVH 361

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            L  ++  I   +         +  RHL  L++   +LE+A+        ++ AE LRLA
Sbjct: 362 LLRQRLLDIAGWQ-PSGEGVFMARSRHLLALNKVRDHLEVAAGRLMQA--ELFAEELRLA 418

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +L  ITG    + LL  IFS+FCIGK
Sbjct: 419 QDALSTITGEFTSDDLLGEIFSRFCIGK 446


>gi|262118592|pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
           Folinic Acid And Zn
          Length = 462

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 153/457 (33%), Positives = 235/457 (51%), Gaps = 26/457 (5%)

Query: 7   TIFAVSTG--ALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYF-FGLDGRI 60
           TI A++T       ++ I+R+SG     + + +     K+     +    Y       +I
Sbjct: 9   TIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQI 68

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ RAF N
Sbjct: 69  VDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQVLQ-LCLESGARLAQPGEFTLRAFLN 127

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AES+ADL+ + +    + ++ G+ G+L+    Q       I + IEA +DF E
Sbjct: 128 GRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARIDFEE 187

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D+     + +++DI  +  +IS  ++    GE++R G K+ I+G  N GKSSL NA +
Sbjct: 188 --DLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWS 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + D AIVTD+PGTTRDV+   L + G  V++ DTAGIRET D VEK G++R+      AD
Sbjct: 246 QSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTAD 305

Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST-------YTEEY--DHLISS 345
           L+LL  +         ++     K+   I +  K DL          Y E        ++
Sbjct: 306 LVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAA 365

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLD 403
              +G++ L   I  I+   K +     +  ++R    L+Q    LE       +   LD
Sbjct: 366 AQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQVQATITQQLPLD 425

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 426 FWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 462


>gi|224475497|ref|YP_002633103.1| tRNA modification GTPase TrmE [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420104|emb|CAL26918.1| putative tRNA modification GTPase TrmE [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 460

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 149/457 (32%), Positives = 247/457 (54%), Gaps = 23/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           +TI ++ST     AI I+RLSG    ++ + + K KKP     S    +G         +
Sbjct: 5   DTITSISTPMGEGAIGIVRLSGKEAVEITDKLYKGKKPLAEVESHTINYGHIVDPETNEV 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P++FT ED  E + HGGI  +N +LE L      RLA PGE+++RAF N
Sbjct: 65  VEEVMVSVLRAPKTFTREDIVEINCHGGILTINHVLE-LTMSYGARLAEPGEYTKRAFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D I S+T+   +++M  + G LS +  +    +  I + +E ++D+ E
Sbjct: 124 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDMIKRQRQSILEILAQVEVNIDYPE 183

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV++ +++ +L     +K DI   ++ G  G+I+R G   VI+G  N GKSS+ N L 
Sbjct: 184 YDDVEDATTEFLLKQSKEIKEDIDKLLATGTQGKIMREGLSTVIVGKPNVGKSSMLNNLI 243

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVEK G++R+   +  AD
Sbjct: 244 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALSEAD 303

Query: 301 LILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHLISS 345
           LIL +   N       +K     KN D I I  K+DL      +              S 
Sbjct: 304 LILFVLNYNEGLTEEDRKLYEVIKNEDAIIIVNKTDLEQHLDLDEVKAMVGDMPVIETSM 363

Query: 346 FTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLD 403
              EG+++L  +I+ +      +    +  S+ RH+  L Q    ++ A    E    +D
Sbjct: 364 LKQEGIDQLEEQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARNAIQDAIDAAEAGVPMD 423

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 424 MVQIDLTRTWQILGEIIGESASDELIDQLFSQFCLGK 460


>gi|168334919|ref|ZP_02693039.1| tRNA modification GTPase TrmE [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 443

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 148/444 (33%), Positives = 245/444 (55%), Gaps = 11/444 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDK 63
            +TI A+ST      I +IR+SG S   +   I  K     +  ++ Y + + DG I+D+
Sbjct: 3   FDTIAAISTPVGQGGIGVIRVSGSSAISIVNKIFTKNLNNKKSHTIHYGYIVSDGLIIDE 62

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L+++  +P++FT ED  E + HGG  V+N +LE L  +   RLA  GEF++RAF NG+I
Sbjct: 63  VLVMLMKAPKTFTREDIVEVNCHGGYVVLNRVLE-LLLVNGARLATAGEFTKRAFLNGRI 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL + E++ D+IS++T +    +   + G LS    ++ + L  I + IE  +D+ E ++
Sbjct: 122 DLSQVEAIMDIISAKTNLSLAQATSQLMGNLSKNIKKYQNILLEIIARIEVSIDYPEYDE 181

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
            +   S     DI  L  D+ + +     G+IIR G  + I+G  N GKSSL NAL ++D
Sbjct: 182 AE-LISDGFEEDITRLIADLKAILETAATGKIIREGAVVTIVGRPNVGKSSLLNALLEED 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT+I GTTRD+++    +EG    + DTAGIR+T D VE+ G++R+   +E +DL++
Sbjct: 241 KAIVTNIAGTTRDIVSEHFSVEGVPFILQDTAGIRDTADAVERIGVERSKEAIEKSDLVI 300

Query: 304 LLKEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
           +L +   K  I      +  KN + +F+  K D    Y+++    IS+ TGEG++EL   
Sbjct: 301 MLLDATEKISIEEVDLMTMLKNRNTLFVVNKIDCVDKYSDDDKIFISATTGEGIDELKAA 360

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAENLRLASVSL 416
           +K+ +      +  ++ S+ R    LS  +  LE           +D +A +L+ A   L
Sbjct: 361 MKAAVVQNLT-MGTAVISNIRQKTALSCAIEALEKVEDAINAGFSVDFLAIDLQDAYSHL 419

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G I G    E++++ +F +FC+GK
Sbjct: 420 GMIIGEEVKEEIINGLFERFCLGK 443


>gi|219856806|ref|YP_002473928.1| hypothetical protein CKR_3463 [Clostridium kluyveri NBRC 12016]
 gi|219570530|dbj|BAH08514.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 465

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 151/459 (32%), Positives = 263/459 (57%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFGLD-- 57
           E +TI A++T      ISIIR+SG +   +   I + K        +  S+RY F ++  
Sbjct: 9   EFDTITAIATVLGEGGISIIRISGENSLSIANSIFRGKNHRDLLDIKPYSMRYGFIIEKD 68

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G ILD+ L+     P+S+T ED  E + HGG+     ++EE+ K    RLA PGEF++R
Sbjct: 69  TGEILDEVLVSFMKGPKSYTAEDIVEINCHGGVLATRKVMEEVIKA-GARLAEPGEFTKR 127

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ D+I +++ +  + +++   G++S       ++L  I + IEA +
Sbjct: 128 AFLNGRIDLSQAEAVIDIIRAKSHISVKSAVQQSQGKISKEINLLREELLEIIAHIEATV 187

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           ++ E ED++  +S ++   I  + ++I+  +S  + G+I+R G  +VI+G  N GKSSL 
Sbjct: 188 NYPE-EDLEEMTSDQIYLKINKILDEINYILSNAEEGKIVREGLSVVIVGKPNVGKSSLL 246

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +++ AIVTDIPGTTRDV+   +++ G  +KI DTAGIR+TDDIVEK G++++  ++
Sbjct: 247 NSLIEENKAIVTDIPGTTRDVIEEYMNIGGIPIKIVDTAGIRKTDDIVEKIGVEKSKEKI 306

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY--------TEEYDHL 342
           + +DL++L+ + +       K+ I++  +  +I +  K+D+               +   
Sbjct: 307 DESDLVILMLDSSKELDEEDKEIINYVNHRKYIILLNKTDIGDKIDLNDICNLNSRFIIK 366

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCG 401
            S   GEGL+++ N IK +      K      ++ RH   L +     +E     +    
Sbjct: 367 TSIKNGEGLDKIKNCIKELFFKGEIKSEDLFITNTRHKEGLIRAKESCIEALQTLKSTLS 426

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D+++ +++ A ++LGKITG    E ++D IFS+FC+GK
Sbjct: 427 IDLVSIDIKNAWINLGKITGDTLEEDIIDKIFSQFCLGK 465


>gi|294792403|ref|ZP_06757550.1| tRNA modification GTPase TrmE [Veillonella sp. 6_1_27]
 gi|294456302|gb|EFG24665.1| tRNA modification GTPase TrmE [Veillonella sp. 6_1_27]
          Length = 461

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 149/460 (32%), Positives = 247/460 (53%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGL-D 57
            +TI A++T      + IIR+SG   F +   + K     P      R            
Sbjct: 4   DDTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSVGTVPLMDRQNRTIQYGTIVDPMT 63

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+ L+++   P S+T ED  E   HGGI  V  IL+ L    ++R+A  GEF++RA
Sbjct: 64  NKTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLV-NHDVRMAEAGEFTKRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I ++TE    L++  + G +SS      ++L  + + +E  +D
Sbjct: 123 FMNGRIDLTQAEAIIDIIEAKTEDSLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTID 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E ED+++ +S+EV + +  +   +   +S    G +IR+G   VI+G  NAGKSSL N
Sbjct: 183 YPE-EDIEDVTSQEVRDQLQPILKAMDDLLSTANTGRLIRDGITTVIVGRPNAGKSSLMN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL +++ AIVTDIPGTTRD +   + +EG  +++ DTAGIR+T D VE  G++R    + 
Sbjct: 242 ALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYIN 301

Query: 298 NADLILLLKEINS---KKEISFP---KNIDFIFIGTKSDLYSTYTEEYDHLISSFT---- 347
            AD++L + + ++    +EI        ++ I +  KSD+    T+E      +FT    
Sbjct: 302 KADIVLCVIDGSTPLNPEEIEILTSVSGLNTIVLLNKSDVAQVVTDENIKEHGTFTAIER 361

Query: 348 -----GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
                GEG   L   ++ ++   + K+   ++ S+ RH+  + Q    +E A S  + D 
Sbjct: 362 ISAKEGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEQALSSIDMDM 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D +A +LR A   LG ITG    E ++D +FS+FC+GK
Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461


>gi|257455160|ref|ZP_05620398.1| tRNA modification GTPase TrmE [Enhydrobacter aerosaccus SK60]
 gi|257447493|gb|EEV22498.1| tRNA modification GTPase TrmE [Enhydrobacter aerosaccus SK60]
          Length = 463

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 157/456 (34%), Positives = 252/456 (55%), Gaps = 26/456 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      + +IRLSGP+ +Q+   +  ++   PR A    F+  D  ++D+GL+
Sbjct: 12  TIAAIATPIGRGGVGVIRLSGPNSYQIALALTGRQAFKPRFAHFCRFYDSDDTVIDEGLV 71

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP+P SFTGED  E   HGG+ +   +L  + ++     A  GEFS RAF+N K+DL+
Sbjct: 72  LYFPAPHSFTGEDVIELQGHGGMILQQQLLTRVFEL-GANQAVAGEFSARAFDNDKLDLV 130

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE++AD I + +    + +M  ++GE S      +++L  +R ++EA +DF +EE V  
Sbjct: 131 QAEAIADAIDATSVAAAKSAMRSLTGEFSQKINALLEQLIQLRLYVEAAIDFPDEEGVDF 190

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            + + +   +  +   +++ ++  K G+++R+G  +VI G  NAGKSSL N LA ++ AI
Sbjct: 191 LADEHIAKQLRQVCEQLNNVLATAKQGQLLRDGVSVVIAGRPNAGKSSLLNRLAGQERAI 250

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTDI GTTRD+L   + L G  + ++DTAG+R+TDDIVE+ GI+R    +  ADL+L++ 
Sbjct: 251 VTDIAGTTRDILQETIVLNGLTLNLTDTAGLRQTDDIVEQAGIERARQAITQADLLLMVY 310

Query: 307 EINSKKEI---------SFPKNIDFIFIGTKSDLYSTYTEE-----------YDHLISSF 346
           + + + E          S P     + I  K DL   +              +   +S  
Sbjct: 311 DAHREHEPLRLATELFGSLPNANSILMIANKIDLSDNHQNLPKQFSSQEQIYHPVYVSCK 370

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDI 404
              GLEEL+N+I   +   F     S+ +  RHL  L +T   L+ A   L+    G ++
Sbjct: 371 YDTGLEELVNQICDKV--GFHPPENSLIARTRHLDALRRTQMALQEADEQLHLFHAG-EL 427

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE+LR A +SL +ITG    + LL  IF  FCIGK
Sbjct: 428 VAESLRQAQISLNEITGEFTADDLLGKIFGSFCIGK 463


>gi|269798908|ref|YP_003312808.1| tRNA modification GTPase TrmE [Veillonella parvula DSM 2008]
 gi|269095537|gb|ACZ25528.1| tRNA modification GTPase TrmE [Veillonella parvula DSM 2008]
          Length = 461

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 148/460 (32%), Positives = 245/460 (53%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLD- 57
            +TI A++T      + IIR+SG   F +   + K     P      R            
Sbjct: 4   DDTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSTGTVPLMDCQNRTIQYGTIVDPTT 63

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+ L+++   P S+T ED  E   HGGI  V  IL+ L    ++R+A  GEF++RA
Sbjct: 64  NKTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLV-NHDVRMAEAGEFTKRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I ++TE    L++  + G +SS      ++L  + + +E  +D
Sbjct: 123 FMNGRIDLTQAEAIIDIIEAKTEDSLSLAVAQLDGTVSSFVKDVREQLIAMIAHLEVTID 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E ED+++ +S+EV   +  +   +   +S    G +IR+G   VI+G  NAGKSSL N
Sbjct: 183 YPE-EDIEDVTSQEVREQLQPILKAMDELLSTANTGRLIRDGITTVIVGRPNAGKSSLMN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL +++ AIVTDIPGTTRD +   + +EG  +++ DTAGIR+T D VE  G++R    + 
Sbjct: 242 ALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYIN 301

Query: 298 NADLILLLKEIN---SKKEISFP---KNIDFIFIGTKSDLYSTYTEEYDHLISSFT---- 347
            AD++L + + +   + +EI        ++ I +  KSD+    T+E      +FT    
Sbjct: 302 KADIVLCVIDGSTSLTPEEIEILTSVSGLNTIVLLNKSDVAQVVTDENIKEHGTFTAIER 361

Query: 348 -----GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
                GEG   L   ++ ++   + K+   ++ S+ RH+  + Q    +E A S  +   
Sbjct: 362 ISAKEGEGSAVLAKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEQALSSIDMGM 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D +A +LR A   LG ITG    E ++D +FS+FC+GK
Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461


>gi|332800542|ref|YP_004462041.1| tRNA modification GTPase mnmE [Tepidanaerobacter sp. Re1]
 gi|332698277|gb|AEE92734.1| tRNA modification GTPase mnmE [Tepidanaerobacter sp. Re1]
          Length = 462

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 151/458 (32%), Positives = 242/458 (52%), Gaps = 25/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLDGR 59
           ETI A+ST      I I+R+SGP  F++ E I K +          R   L      +  
Sbjct: 7   ETIAAISTAIGEGGIGIVRISGPRAFEIAEKIFKPRIKKSLFEFKNRTLYLGDIVDSNDE 66

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ LL +F +P ++T ED  E + HGG+     IL  L      RLA PGEF++RAF 
Sbjct: 67  IIDEVLLAIFKAPHTYTREDMVEINCHGGLVAQKRIL-ALVLDNGARLAEPGEFTKRAFL 125

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I ++T+    ++   ++GE S    +    L ++ + IEA++DF 
Sbjct: 126 NGRIDLSQAEAVIDIIRAKTDRALAVANRRLTGEFSEKISKIRSNLLNVIAHIEANIDFP 185

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +D+     + +  +I  +   +   +     G I+R G   +ILG++N GKSSL NAL
Sbjct: 186 E-DDIPEAEPEYISQEINNVLKMVEDLLRSAGSGRILREGLSTLILGNTNVGKSSLLNAL 244

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            +++ AIVTDIPGTTRD++   +D++G  +KI DTAGIR+T D VEK GI R    ++ A
Sbjct: 245 LQEERAIVTDIPGTTRDIIEEYIDIQGIPIKIIDTAGIRQTTDEVEKIGINRAMKHLQEA 304

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDL---------YSTYTEEYDHLIS 344
           +L+LL+ ++      + K+ I    +   I +  K DL              E     +S
Sbjct: 305 ELVLLMIDVSRKLTDDDKRLIELVGDKTTITVINKVDLPVAVDEYEIKKLVPEAKIVKVS 364

Query: 345 SFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGL 402
           +   EG++EL   I   ++ K        I + +R    L ++  +L+ A     +   +
Sbjct: 365 ALKQEGIDELKTVIYDTITEKMGFTDEGLIVASERQRRILEESREFLKSALCAMAEGVPI 424

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++  ++R A   LG+ITG    E +++ IF KFCIGK
Sbjct: 425 EMVEIDIRDAWEKLGEITGDTVSEDIINTIFQKFCIGK 462


>gi|238018228|ref|ZP_04598654.1| hypothetical protein VEIDISOL_00052 [Veillonella dispar ATCC 17748]
 gi|237864699|gb|EEP65989.1| hypothetical protein VEIDISOL_00052 [Veillonella dispar ATCC 17748]
          Length = 461

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 148/460 (32%), Positives = 246/460 (53%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGL-D 57
            +TI A++T      + IIR+SG   F +   + K     P      R            
Sbjct: 4   DDTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSAGTVPLMDRQNRTIQYGTIVDPGT 63

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+ L+++   P S+T ED  E   HGGI  V  IL+ L    ++R+A  GEF++RA
Sbjct: 64  NKTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLV-NHDVRMAEAGEFTKRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I ++TE    L++  + G +SS      ++L  + + +E  +D
Sbjct: 123 FMNGRIDLTQAEAIIDIIEAKTEDSLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTID 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E ED+++ +S+EV   +  +   +   +S    G +IR+G   VI+G  NAGKSSL N
Sbjct: 183 YPE-EDIEDVTSQEVREQLEPILKAMDDLLSTANTGRLIRDGITTVIVGRPNAGKSSLMN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL +++ AIVTDIPGTTRD +   + +EG  +++ DTAGIR+T D VE  G++R    + 
Sbjct: 242 ALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYIN 301

Query: 298 NADLILLLKEIN---SKKEISFP---KNIDFIFIGTKSDLYSTYTEEYDHLISSFT---- 347
            AD++L + + +   + +EI        ++ I +  KSD+    T+E+     +FT    
Sbjct: 302 KADIVLCVIDGSTPLTPEEIEILTSVSGLNTIVLLNKSDMAQVVTDEHIKEHGNFTAIER 361

Query: 348 -----GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
                GEG   L   ++ ++   + K+   ++ S+ RH+  + Q    +E A S  +   
Sbjct: 362 ISAKEGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEQALSSIDMGM 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D +A +LR A   LG ITG    E ++D +FS+FC+GK
Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461


>gi|256851670|ref|ZP_05557058.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 27-2-CHN]
 gi|260661613|ref|ZP_05862525.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 115-3-CHN]
 gi|256615628|gb|EEU20817.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 27-2-CHN]
 gi|260547670|gb|EEX23648.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 115-3-CHN]
          Length = 460

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/459 (31%), Positives = 235/459 (51%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+RLSG    ++   + K K    + AS    +G       
Sbjct: 5   TEFDTIAAISTPIGEGGISIVRLSGEDAVKIANKLFKGKD-LSKVASHTINYGHIIDPET 63

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ ++ V  +P++FT ED  E + HGGI V N IL+ L K    R+A  GEF++RA
Sbjct: 64  SKVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLK-HGARMAEAGEFTKRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R+++M  + G L         ++    + +E ++D
Sbjct: 123 FVNGRIDLTQAESVMDIVRAKTDKARQVAMNQLEGGLLDKIRNMRQEILDTLANVEVNID 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D    ++ ++      +   I+  +     G+I+RNG    I+G  N GKSSL N
Sbjct: 183 YPEY-DADQVTATQMQETSKKVIEAINRLLKTANQGKIMRNGLATAIVGRPNVGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + + G  +K+ DTAGI  T+D VEK G++R+   +E
Sbjct: 242 YLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTEDKVEKIGVERSKKAIE 301

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLI 343
            ADL+LLL   +       +K I + KN   I +  K+DL     +E           + 
Sbjct: 302 QADLVLLLLNASEALTTEDEKLIDYTKNKKRIVVLNKADLGIKLNKEDLKVQTQASIVVT 361

Query: 344 SSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    E L EL   I  +  +         + +++R    L +    L ++    + D  
Sbjct: 362 SILKEENLNELEEAISKLFFSGIHNSNDEVLVTNQRQAGLLEKAKDQLTDVVDAVDNDVP 421

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LDI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 422 LDIAQIDFTGAWDTLGEITGDSAPDELITQLFSQFCLGK 460


>gi|190171262|gb|ACE63701.1| ThdF [Cronobacter dublinensis]
 gi|190171264|gb|ACE63702.1| ThdF [Cronobacter dublinensis]
          Length = 439

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/442 (33%), Positives = 233/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRVSGQQARDVAQAVLG-KLPKSRYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                 P  +    +  K+D+       S         +S+ T +G++
Sbjct: 299 TTDATDPAQIWPDFIARLPATLPITVVRNKADVTGEAPGISEVNGHSLVRLSARTSDGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L + +K  +     ++     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRSHLKQSMGFD-TRMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|161702952|ref|YP_370756.2| tRNA modification GTPase TrmE [Burkholderia sp. 383]
 gi|205829162|sp|Q39BQ4|MNME_BURS3 RecName: Full=tRNA modification GTPase mnmE
          Length = 464

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/466 (33%), Positives = 243/466 (52%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  +K  PR AS   F  
Sbjct: 2   LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCG-QKLAPRHASYVPFLD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 61  EHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPE-EEIDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIART 299

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +        +      FP  +  + +  K+DL          +   
Sbjct: 300 WSEIERADVVLHLLDSRNGMTADDETIAARFPGGVPVVRVLNKTDLTGVAACVEHPAAEG 359

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
           +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+  
Sbjct: 360 DLTEVHLSAKRGDGIDMLRAELLRIAGWQAG-AEGVYLARERHLIALRAAQEHLAQAADH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|167041019|ref|YP_001664004.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X514]
 gi|205829185|sp|B0K5N4|MNME_THEPX RecName: Full=tRNA modification GTPase mnmE
 gi|166855259|gb|ABY93668.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X514]
          Length = 460

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 160/460 (34%), Positives = 242/460 (52%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR- 59
            +TI A+ST    + I I+RLSG    ++   I K  K       +  +L Y   +D   
Sbjct: 3   FDTIAAISTFPGEAGIGIVRLSGDDALEIISKIFKPYKSKDIKKVKSHTLHYGHIVDPET 62

Query: 60  --ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             + D+ L+ +   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++RA
Sbjct: 63  EEVYDEVLVSIMEKPNTYTREDIVEINCHGGIVVTSKILELVLK-QGARLAEPGEFTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I ++T +  R + + + G + S   +  DK+  +   + A +D
Sbjct: 122 FLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLLVHLLALID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E EDV+    KE+L     +  DI   I+  + G IIR G K  I+G  N GKSSL N
Sbjct: 182 FPE-EDVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G+ ++   + 
Sbjct: 241 ALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVTKSKEVLA 300

Query: 298 NADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHL 342
            ADLIL + + + +      +        + IF+  K DL     E+             
Sbjct: 301 EADLILFVLDASRELTKEDYEIFDILTGKNIIFVLNKIDLPKKIDEKELKDLTKDGIIIE 360

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDC 400
           +S+    GLEEL N I +++      L    I  + RH   L    +Y+E      E   
Sbjct: 361 VSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALINAKKYMESCVEAIEGGY 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D+I  +L  A   LGKITG    E L++ IF +FC+GK
Sbjct: 421 SEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 460


>gi|190171260|gb|ACE63700.1| ThdF [Cronobacter dublinensis]
          Length = 439

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/442 (33%), Positives = 232/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                 P  +    +  K+D+       S         +S+ T +G++
Sbjct: 299 TTDATDPAQIWPDFIARLPATLPITVVRNKADVTGEVPGISEVNGHSLVRLSARTSDGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L + +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRSHLKQSMGFD-TSMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|17232169|ref|NP_488717.1| tRNA modification GTPase TrmE [Nostoc sp. PCC 7120]
 gi|21363007|sp|Q8YN91|MNME_ANASP RecName: Full=tRNA modification GTPase mnmE
 gi|17133814|dbj|BAB76376.1| thiophen / furan oxidation protein [Nostoc sp. PCC 7120]
          Length = 459

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 153/457 (33%), Positives = 235/457 (51%), Gaps = 26/457 (5%)

Query: 7   TIFAVSTG--ALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYF-FGLDGRI 60
           TI A++T       ++ I+R+SG     + + +     K+     +    Y       +I
Sbjct: 6   TIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQI 65

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ RAF N
Sbjct: 66  VDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQVLQ-LCLESGARLAQPGEFTLRAFLN 124

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AES+ADL+ + +    + ++ G+ G+L+    Q       I + IEA +DF E
Sbjct: 125 GRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARIDFEE 184

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D+     + +++DI  +  +IS  ++    GE++R G K+ I+G  N GKSSL NA +
Sbjct: 185 --DLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWS 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + D AIVTD+PGTTRDV+   L + G  V++ DTAGIRET D VEK G++R+      AD
Sbjct: 243 QSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTAD 302

Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST-------YTEEY--DHLISS 345
           L+LL  +         ++     K+   I +  K DL          Y E        ++
Sbjct: 303 LVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAA 362

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLD 403
              +G++ L   I  I+   K +     +  ++R    L+Q    LE       +   LD
Sbjct: 363 AQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQVQATITQQLPLD 422

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 423 FWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 459


>gi|190171266|gb|ACE63703.1| ThdF [Cronobacter dublinensis]
          Length = 439

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 147/442 (33%), Positives = 234/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-- 307
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 308 ---INSKKEI------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
                   +I        P  +    +  K+D+       S         +S+ T +G++
Sbjct: 299 TTNATDPAQIWPDFIARLPATLPITVVRNKADVTGEAPGISEVNGHSLVRLSARTSDGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L + +K  +     ++     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRSHLKQSMGFD-TRMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|325104167|ref|YP_004273821.1| tRNA modification GTPase trmE [Pedobacter saltans DSM 12145]
 gi|324973015|gb|ADY51999.1| tRNA modification GTPase trmE [Pedobacter saltans DSM 12145]
          Length = 455

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 153/454 (33%), Positives = 252/454 (55%), Gaps = 18/454 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLDGR-I 60
             ++TI A++T     AI +IRLSGP   ++   + K K    +   ++ +    +G  I
Sbjct: 4   QAEDTIVALATPVGAGAIGVIRLSGPDAIKITNKVFKGKDLEKQDSHTVHFGTIREGDLI 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ +F +P+S+T E+  E   HG   ++  I++ L      R A PGEF+ RAF N
Sbjct: 64  IDEVLVSLFVAPKSYTKENIVEISCHGSSYIIENIIK-LMIRNGARGAKPGEFTLRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G +DL +AE++ADLI+S +E   +L+M+ M G  SS      D+L H  S IE +LDFSE
Sbjct: 123 GGLDLSQAEAVADLIASSSETSHQLAMKQMRGGFSSELKNLRDQLIHFASMIELELDFSE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            EDV+  +  ++   IL ++  +   I+    G +++NG  +VI G  N GKS+L NAL 
Sbjct: 183 -EDVEFANRGQLKQLILDIQKVLDKLITSFDQGNVLKNGVPVVIAGKPNVGKSTLLNALL 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV+DI GTTRD +  +++++G + +  DTAGIRET D++E +G++RT  +++ A 
Sbjct: 242 NEERAIVSDIAGTTRDTIEDEINVKGVIFRFIDTAGIRETQDVIEAKGVERTLEKIKQAR 301

Query: 301 LILLLKE--------INSKKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFT 347
           L++ L +        +  + +     NI ++ +  K DL S      Y++     IS+  
Sbjct: 302 LLVYLADPIQDDFAAVKEQLDEVKAYNIPYLLVVNKKDLLSAEQIEAYSQLSPLFISAKN 361

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIA 406
             G++EL +++  I++         + S+ RH+  L +T   L       +     D +A
Sbjct: 362 NLGVDELKDRLLEIVNLANLNSEDVMVSNIRHVEALQKTHEALVRVLYGIDNPVASDFLA 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++R +   LG+ITG V  + LLD IFSKFCIGK
Sbjct: 422 MDIRQSLYHLGEITGEVTTDDLLDNIFSKFCIGK 455


>gi|170739706|ref|YP_001768361.1| tRNA modification GTPase TrmE [Methylobacterium sp. 4-46]
 gi|205415797|sp|B0UJI9|MNME_METS4 RecName: Full=tRNA modification GTPase mnmE
 gi|168193980|gb|ACA15927.1| tRNA modification GTPase TrmE [Methylobacterium sp. 4-46]
          Length = 437

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 171/440 (38%), Positives = 253/440 (57%), Gaps = 10/440 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDKG 64
           +TIFA ++G   +A+++IR+SGP        +     P PR+ SLR       G +LD+ 
Sbjct: 3   DTIFAPASGFGRAAVAVIRISGPGAASCLTALTGHPPPLPRRLSLRQLRDPGTGEVLDRA 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++  P P +FTGEDSAE H+HGG AV   +L  L ++P L  A PG F+RRAF NG++D
Sbjct: 63  LVVWLPGPATFTGEDSAELHLHGGAAVRAAVLRVLGRLPGLAPAEPGAFTRRAFLNGRMD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L   E LADLI +ETE QRR +M  + G L  L   W D L  + +  EA LDFS+E DV
Sbjct: 123 LTAVEGLADLIDAETEAQRRQAMRQLDGALGRLVEAWRDTLLGVLAGAEAALDFSDEGDV 182

Query: 185 QN-FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
                S   L     +++ I + +++G+ GE +R G+ +V+ G  NAGKS+L NALA+++
Sbjct: 183 DESALSASGLAAAARVRDAILAALAEGRRGERLREGFVVVLAGPPNAGKSTLLNALARRE 242

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLI 302
            AIV+ IPGTTRD + +  DL+G  V + DTAG+R+   D +E EG+ R+   +E ADL+
Sbjct: 243 AAIVSPIPGTTRDAIEVRCDLDGLPVLLVDTAGLRDEGADPIEAEGMARSRRRIEEADLV 302

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD--HLISSFTGEGLEELINKIKS 360
           L L         + PK    + + TK DL        D    IS+ TGEGL  L++++ +
Sbjct: 303 LWLVPPEG--GAAAPKG--ALVVHTKRDLGRDPGGGVDGALAISALTGEGLAMLLDRVAA 358

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
             +        ++ + +R    L +   +L  A    +    +++AE+LRLA  +LG + 
Sbjct: 359 A-AGAALGRGDAVVTRERQRRALEECAAHLGRAIAGAETMPAELVAEDLRLAVRALGAVA 417

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G V VE++LD +FS FCIGK
Sbjct: 418 GRVGVEEMLDRLFSSFCIGK 437


>gi|190171286|gb|ACE63713.1| ThdF [Cronobacter muytjensii]
 gi|190171288|gb|ACE63714.1| ThdF [Cronobacter muytjensii]
 gi|190171292|gb|ACE63716.1| ThdF [Cronobacter muytjensii]
 gi|190171294|gb|ACE63717.1| ThdF [Cronobacter muytjensii]
          Length = 439

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/442 (33%), Positives = 232/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                 P  +    +  K+D+       S         +S+ T +G++
Sbjct: 299 TTDATDPAQIWPDFIARLPATLPITVVRNKADVTGELPGISEVNGHSLVRLSARTSDGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L + +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRSHLKQSMGFD-TSMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|170697748|ref|ZP_02888835.1| tRNA modification GTPase TrmE [Burkholderia ambifaria IOP40-10]
 gi|170137363|gb|EDT05604.1| tRNA modification GTPase TrmE [Burkholderia ambifaria IOP40-10]
          Length = 464

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 152/466 (32%), Positives = 243/466 (52%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  ++  PR AS   F  
Sbjct: 2   LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCG-QRLTPRHASYVPFVD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 61  EHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPE-EEIDFLEAADARGKLAKIREQLAQVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIART 299

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +        +      FP  +  + +  K+DL          +   
Sbjct: 300 WSEIERADVVLHLLDSRTGMTADDEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPAAEG 359

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
           +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+  
Sbjct: 360 DLTEVHLSAKRGDGIDMLRTELLRIAGWQAG-AEGVYLARERHLIALRAAQEHLAQAADH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|268320269|ref|YP_003293925.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii FI9785]
 gi|262398644|emb|CAX67658.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii FI9785]
          Length = 461

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 144/459 (31%), Positives = 241/459 (52%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            + +TI A+ST      ISI+RLSG     +   + K      +  S    +G       
Sbjct: 6   TQFDTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGAD-LTKVPSHTIHYGHIVDPKT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ ++ V  +P++FT ED  E + HGG+ V N IL+ L      R+A+PGEF++RA
Sbjct: 65  KDVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R+++M  ++G L         +L    +  E ++D
Sbjct: 124 FMNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIRTMRQELLDTMAHEEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D+ + +S+E+      +   I   +   + G+IIRNG    I+G  N GKSSL N
Sbjct: 184 YPEY-DMDDLTSQEMKKKAEEVSKQIDQLLKTAQEGKIIRNGLATAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTDI GTTRD L   + ++G  +K+ DTAGI  T+D VEK G++R+   + 
Sbjct: 243 YLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVERSKKAIA 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLI 343
            ADL+LLL + +       K  ++   N   I I  K DL +  ++E           + 
Sbjct: 303 EADLVLLLLDASQDLTDEDKNLLNLTANKKRIIILNKQDLGTKISQEMIRKITDNPIIVT 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CG 401
           S    + ++ L N I+ +  +  +      + +++R    L++  + LE       D   
Sbjct: 363 SILKQKNMDALENAIEQLFFSGIENSQNQILVTNQRQAGLLAKAKQSLEDVVNGIDDAMP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD++  +L+ A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 423 LDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|313893537|ref|ZP_07827107.1| tRNA modification GTPase TrmE [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441980|gb|EFR60402.1| tRNA modification GTPase TrmE [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 461

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 148/460 (32%), Positives = 246/460 (53%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGL-D 57
            +TI A++T      + IIR+SG   F +   + K     P      R            
Sbjct: 4   DDTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSAGTVPLMDRQNRTIQYGTIVDPAT 63

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+ L+++   P S+T ED  E   HGGI  V  IL+ L    ++R+A  GEF++RA
Sbjct: 64  NKTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLV-NHDVRMAEAGEFTKRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I ++TE    L++  + G +SS      ++L  + + +E  +D
Sbjct: 123 FMNGRIDLTQAEAIIDIIEAKTEDSLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTID 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E ED+++ +S+EV + +  +   +   +S    G +IR+G   VI+G  NAGKSSL N
Sbjct: 183 YPE-EDIEDVTSQEVSDQLQPILKAMDELLSTANTGRLIRDGITTVIVGRPNAGKSSLMN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL +++ AIVTDIPGTTRD +   + +EG  +++ DTAGIR+T D VE  G++R    + 
Sbjct: 242 ALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYIN 301

Query: 298 NADLILLLKEIN---SKKEISFP---KNIDFIFIGTKSDLYSTYTEEYDHLISSFT---- 347
            AD++L + + +   + +EI        ++ I +  KSD+    T+E      +FT    
Sbjct: 302 KADIVLCVIDGSTPLTPEEIEILTSVSGLNTIVLLNKSDVAQVVTDENIKEHGTFTAIER 361

Query: 348 -----GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
                GEG   L   ++ ++   + K+   ++ S+ RH+  + Q    +E A S  +   
Sbjct: 362 ISAKEGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEQALSSIDMGM 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D +A +LR A   LG ITG    E ++D +FS+FC+GK
Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461


>gi|237749241|ref|ZP_04579721.1| tRNA modification GTPase mnmE [Oxalobacter formigenes OXCC13]
 gi|229380603|gb|EEO30694.1| tRNA modification GTPase mnmE [Oxalobacter formigenes OXCC13]
          Length = 462

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/464 (34%), Positives = 246/464 (53%), Gaps = 26/464 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK----KPFPRKASLRYFFGL 56
           M  +   I A++T      + I+R+SG +   +   + K         PR A    F   
Sbjct: 1   MKTDSSPIVAIATPPGRGGVGIVRVSGKNLDPLINELFKDTMADLPLTPRYAHFLPFLDA 60

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEF 113
           D  I+D+GL I F +P SFTGED  E   HGG  V+  +L+         +LR+A PGEF
Sbjct: 61  DKSIIDEGLAIYFKAPNSFTGEDVLELQGHGGTTVLQMVLKRCLLAGEKIDLRMAEPGEF 120

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N +IDL +AE++ADLI + TE   R +   +SG  S    + +  +  +R  +E
Sbjct: 121 TRRAFLNDRIDLAQAEAIADLIDATTEEAVRSASRSLSGVFSKEIHELVANIIQLRMMVE 180

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           + LDF E ED+     + V   I  ++  +S+ I+Q   G ++R G  +V+ G +N GKS
Sbjct: 181 SSLDFPE-EDIDFLKKENVEGQIANIQEALSAIIAQSAQGALLREGIHVVLAGQTNVGKS 239

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKR 291
           SL N LA  +VAIVT I GTTRD +T  + +EG  V + DTAGIR    +D VE+ GI+R
Sbjct: 240 SLLNTLAGSNVAIVTPIAGTTRDKITETIQIEGVPVTLIDTAGIRANSAEDEVERIGIER 299

Query: 292 TFLEVENADLILLLKE-------INSKKEISFPKNIDFIFIGTKSDL------YSTYTEE 338
           T+ E+  AD+IL L +        + K    FP+NI  I I  K D+        +    
Sbjct: 300 TWTEIGKADVILHLLDASLGPTRADEKIAADFPENIPVIQIWNKIDISGHRPSVDSMFGI 359

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-- 396
               +S+ T +G++ L +++  I     +    +  + +RHL  +    ++L +AS +  
Sbjct: 360 TQVYLSTQTEQGIDLLRDELLKIA-GWTQTGESTYLARERHLTAMKVAEQHLAIASEHAT 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +  +D++AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AANPSIDLLAEELRLAQDALNSITGEFTSDDLLGLIFSRFCIGK 462


>gi|110835613|ref|YP_694472.1| tRNA modification GTPase [Alcanivorax borkumensis SK2]
 gi|123345176|sp|Q0VKU8|MNME_ALCBS RecName: Full=tRNA modification GTPase mnmE
 gi|110648724|emb|CAL18200.1| tRNA modification GTPase [Alcanivorax borkumensis SK2]
          Length = 456

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/458 (33%), Positives = 244/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    +TI A++T      + ++RLSGP    +   I  ++   PR A    F   DG +
Sbjct: 2   LTSSPDTIVAIATAPGRGGVGVVRLSGPQALSIASSIVGERLLSPRLAHFCRFRNQDGDV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL+I FP+P SFTGED  E   HGG  +++ ++    +    R A  GEFS+RAF N
Sbjct: 62  LDEGLVISFPAPHSFTGEDVVELQGHGGPVILDMLVATCIEA-GARQARAGEFSQRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + T    R ++  + G  S+   Q ++ L  +R ++EA +DF E
Sbjct: 121 DKMDLTQAEAIADLIDAGTAASARAALHSLQGVFSAEVNQLVEALIGLRIYVEAAIDFPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  +V +D+  ++      + +   G ++R G  +VI G  NAGKSSL NALA
Sbjct: 181 -EEIDFLSDGKVASDLRAVRKQCLRVLGEANQGRLVREGMTLVIAGKPNAGKSSLMNALA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTDI GTTRDVL   + L+G  + + DTAG+R++ D+VE+EGI+R + E+  AD
Sbjct: 240 GFDAAIVTDIAGTTRDVLRESIQLDGMPLNLIDTAGLRDSADVVEQEGIRRAYAEMRKAD 299

Query: 301 LILLLKEINSK--------------KEISFPKNIDFIFIGTKSDLYSTYTE---EYDHLI 343
            +L++ +                  ++     ++    +  K+DL    T    +   +I
Sbjct: 300 RLLVMVDSRDPLDDIHNLHDLLPQSQQQLENLDLPVTVVLNKADLSGLSTGPRADGAFVI 359

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402
           S+  GEGL+ L   +K +   +  +      + +RH+  L + +  LE            
Sbjct: 360 SAANGEGLDALRGHLKQVAGYQ-GEGQSRFSARRRHITALEKALMALESGEQQLHGQAAG 418

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE+LR A  +L +ITG    + LL  IFS FCIGK
Sbjct: 419 ELLAEDLRAAQKALEEITGVFTADDLLGRIFSSFCIGK 456


>gi|289579530|ref|YP_003478157.1| tRNA modification GTPase TrmE [Thermoanaerobacter italicus Ab9]
 gi|289529243|gb|ADD03595.1| tRNA modification GTPase TrmE [Thermoanaerobacter italicus Ab9]
          Length = 460

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 158/460 (34%), Positives = 242/460 (52%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD--- 57
            +TI A+ST    + I I+R+SG    ++   I K  K       +  +L Y   +D   
Sbjct: 3   FDTIAAISTFPGEAGIGIVRISGDDALEIISKIFKPYKAKDIKKVKSHTLHYGHIVDPET 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I D+ L+ +   P ++T ED  E + HGGI + + ILE + K    RLA PGEF++RA
Sbjct: 63  QEIYDEVLVSIMKKPNTYTREDIVEINCHGGIVITSKILELVLK-QGARLAEPGEFTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+++T +  + + + ++G + S   +  DK+  +   + A +D
Sbjct: 122 FLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLAGYVGSRIKEMKDKIMGLLVHLLALID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E EDV+    KE+L     +  DI   I   + G IIR G K  I+G  N GKSSL N
Sbjct: 182 FPE-EDVEELERKEMLETAKEIVEDIDKLIVSSESGRIIREGLKTAIIGKPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL K++ AIVTDIPGTTRD++   ++++G  +K+ DTAGIR+TD++VEK G++R+   + 
Sbjct: 241 ALLKENRAIVTDIPGTTRDIIEEYINVKGIPIKLIDTAGIRDTDELVEKIGVERSKEVLA 300

Query: 298 NADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTE---------EYDHL 342
            ADLIL + + + +      +        + IF+  K DL     E              
Sbjct: 301 EADLILFVLDASRELSEEDYQIFDILTEKNIIFVLNKIDLPKKIDESKLKSLIKDGIIIE 360

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDC 400
           +S+    GLE+L N I  ++      L    I  + RH   L    +Y+E      E   
Sbjct: 361 VSTVERIGLEKLENAIYDLVFRGDINLREEEIIINSRHKEALINAKKYMESCVKAIEMGY 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D+I  +L  A   LGKITG    E L++ IF +FC+GK
Sbjct: 421 SEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 460


>gi|190171244|gb|ACE63692.1| ThdF [Escherichia hermannii]
          Length = 438

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 148/441 (33%), Positives = 235/441 (53%), Gaps = 21/441 (4%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFP 70
            +T      + I+R+SG     V + +   K P PR A    F  +D   LD+G+ + FP
Sbjct: 1   QATHPGRGGVGILRISGLKARDVAQAVLG-KLPKPRYADYLPFRDVDNTALDQGIALWFP 59

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
            P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE+
Sbjct: 60  GPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEA 119

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +ADLI + +E   R ++  + G  S+   Q ++ LTH+R ++EA +DF + E++   S  
Sbjct: 120 IADLIDASSEQAARSALNSLQGAFSTRVNQLVEALTHLRIYVEAAIDFPD-EEIDFLSDG 178

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI
Sbjct: 179 KIEAQLNDVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDI 238

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  +
Sbjct: 239 AGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTT 298

Query: 311 KKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEE 353
                            P+ +    +  K+D+       S         +S+ TG G++ 
Sbjct: 299 TDATDPAAIWPDFIARLPQKLPITVVRNKADITGEPQGLSEVNGHSLIRLSARTGNGVDV 358

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLA 412
           L + +K  +      +     + +RHL  L    ++LE            +++AE LRLA
Sbjct: 359 LRDHLKHSMGFD-TNMEGGFLARRRHLQALETAAQHLEQGKAQLLGAWAGELLAEELRLA 417

Query: 413 SVSLGKITGCVDVEQLLDIIF 433
             SL +ITG    + LL  IF
Sbjct: 418 QQSLSEITGEFTSDDLLGRIF 438


>gi|172039509|ref|YP_001806010.1| tRNA modification GTPase TrmE [Cyanothece sp. ATCC 51142]
 gi|171700963|gb|ACB53944.1| tRNA modification GTPase [Cyanothece sp. ATCC 51142]
          Length = 460

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/460 (33%), Positives = 241/460 (52%), Gaps = 23/460 (5%)

Query: 1   MNHEKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYF-F 54
           M  + ETI A++T       +I IIRLSG     + + +     K+K    +    Y   
Sbjct: 4   MITQGETIAAIATAIVPQQGSIGIIRLSGNKALNIAQTLFIAPGKQKWESHRILYGYIRH 63

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L       LA PGEF+
Sbjct: 64  PQTEQVIDEALLLMMLAPRSYTREDVIEFHCHGGIMPVQQVLQ-LCLEQGAILAQPGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF NG+IDL +AES+ +L+S+ ++   ++++ G+ G+L+            I + IEA
Sbjct: 123 LRAFLNGRIDLTQAESIRELVSARSQQASQMALAGLQGKLAQPIQTLRHHCLDILAEIEA 182

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF E  D+       +   +  +     S ++  + GE++RNG K+ I+G  N GKSS
Sbjct: 183 RIDFEE--DLPPLDENAISQGLKSILEQFESILNTAEQGELLRNGLKVAIVGRPNVGKSS 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NA ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIR+T D VEK G++R+ L
Sbjct: 241 LLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRQTTDQVEKIGVERSRL 300

Query: 295 EVENADLILLLKEI-----NSKKEISFP-KNIDFIFIGTKSDLYSTYTEEYD------HL 342
               ADL+LL  +      +   EI  P +++  I +  K DL +    ++         
Sbjct: 301 AASQADLVLLTIDATVGWTSQDSEIYQPIRHLPVILVINKIDLATPNLSQFPPEITEIVK 360

Query: 343 ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDC 400
            S+   +G+E L   I K+I   K          ++R    L++    L+   +   +D 
Sbjct: 361 TSAANHQGIEALEAAILKAINQQKLTANNLDFAINQRQSAALTRAKIALQQVQITIAEDL 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 421 PLDFWTIDLRSAIQALGEITGEEITESVLDKIFSRFCIGK 460


>gi|171316351|ref|ZP_02905571.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MEX-5]
 gi|171098480|gb|EDT43282.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MEX-5]
          Length = 464

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 154/466 (33%), Positives = 246/466 (52%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  ++  PR AS   F  
Sbjct: 2   LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCG-QRLAPRHASYVPFLD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 61  EHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  +   +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPE-EEIDFLEAADARGKLARIREQLVHVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIART 299

Query: 293 FLEVENADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +    + ++ E+    FP  +  + +  K+DL          S   
Sbjct: 300 WSEIERADVVLHLLDSRTGMTAEDEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPSAEG 359

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
           +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+  
Sbjct: 360 DLTEVHLSAKRGDGIDMLRAELLRIAGWQAG-AEGVYLARERHLIALRAAQEHLAQATDH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|303228568|ref|ZP_07315395.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-134-V-Col7a]
 gi|302516747|gb|EFL58662.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-134-V-Col7a]
          Length = 461

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 147/460 (31%), Positives = 245/460 (53%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGL-D 57
            +TI A++T      + IIR+SG   F +   + K     P      R            
Sbjct: 4   DDTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSAGTVPLMDRQNRTIQYGTIVDPAT 63

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+ L+++   P S+T ED  E   HGGI  V  IL+ L    ++R+A  GEF++RA
Sbjct: 64  NKTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVSVRQILKLLV-NHDVRMAEAGEFTKRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I ++TE    L++  + G +SS      ++L  + + +E  +D
Sbjct: 123 FMNGRIDLTQAEAIIDIIEAKTEESLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTID 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E ED+++ +S+EV   +  +   +   +S    G +IR+G   VI+G  NAGKSSL N
Sbjct: 183 YPE-EDIEDVTSQEVREQLEPILKAMDELLSTANTGRLIRDGITTVIVGRPNAGKSSLMN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL +++ AIVTDIPGTTRD +   + +EG  +++ DTAGIR+T D VE  G++R    + 
Sbjct: 242 ALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYIN 301

Query: 298 NADLILLLKEINSK---KEISFP---KNIDFIFIGTKSDLYSTYTEEYDHLISSFT---- 347
            AD++L + + ++    +EI        ++ + +  KSD+    T+E      +FT    
Sbjct: 302 KADIVLCVIDGSTPLTSEEIEILTSVSGLNTMVLLNKSDVAQVVTDENIEEHGNFTAIER 361

Query: 348 -----GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
                GEG   L   ++ ++   + K+   ++ S+ RH+  + Q    +E A S  +   
Sbjct: 362 ISAKDGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEEALSSIDMGM 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D +A +LR A   LG ITG    E ++D +FS+FC+GK
Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461


>gi|291615448|ref|YP_003525605.1| tRNA modification GTPase TrmE [Sideroxydans lithotrophicus ES-1]
 gi|291585560|gb|ADE13218.1| tRNA modification GTPase TrmE [Sideroxydans lithotrophicus ES-1]
          Length = 447

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 154/454 (33%), Positives = 240/454 (52%), Gaps = 21/454 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+ + + I A++T      I ++R+SG         I    +  PR A+   F   DG  
Sbjct: 1   MSLKPDNIAAIATAPGRGGIGVVRVSGSG-LAAMAIILTGNRLTPRLATYTSFLAADGST 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP+P S+TGE+  E   HGG AV+  +L    ++   RLA PGEF++RAF N
Sbjct: 60  LDQGICLFFPAPHSYTGEEVLELQGHGGPAVLQSLLHRCLEL-GARLAQPGEFTQRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + TE   R +M  + GE S+     + +L  +R  +EA LDF E
Sbjct: 119 DKMDLAQAESVADLIDATTEQAARSAMRSLQGEFSAAIHHAVSQLIDLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+++        + +  L + ++      K G I+R G ++V++G  NAGKSSL N  A
Sbjct: 179 -EEIETADRLLCASKLNILMDGLARIAGLAKQGSILREGAQVVLVGAPNAGKSSLLNRFA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +++A+V++IPGTTRD +   L + G  + + DTAG+RET+D VE+ GI RT L +  AD
Sbjct: 238 GEEIALVSEIPGTTRDSIRQALQVRGVPLHLIDTAGLRETNDAVEQMGIARTKLALTRAD 297

Query: 301 LILLLKEINSKKE--------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSF 346
           ++L+L + + ++            P     +++  K DL           ++    +S+ 
Sbjct: 298 VVLVLLDESRRRTEPEDFAVLAQLPAKTPCLYLHNKVDLSGHMPGVEIDADKIHIYLSAK 357

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
           TG G+E L  K+   +   + +      +  RHL  L+    +LE A         +I A
Sbjct: 358 TGAGMEVLEEKLLESI--GWHQETGVFMARTRHLEALATAGLHLEGARQQIDR--PEIFA 413

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LR A  +L  ITG    + LL  IFS+FCIGK
Sbjct: 414 EELRHAQEALSSITGEFSADDLLGEIFSRFCIGK 447


>gi|306518614|ref|NP_001182351.1| tRNA modification GTPase GTPBP3, mitochondrial isoform VII [Homo
           sapiens]
          Length = 514

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 172/461 (37%), Positives = 253/461 (54%), Gaps = 30/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 57  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 116

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 117 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 176

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 177 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 236

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 237 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPV 296

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R    +E ADLIL 
Sbjct: 297 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 356

Query: 305 LKEINSKKEISFPK-----------------NIDFIFIGTKSDLYSTYTEEYDHLI---- 343
           + + +     S                    +   + +  KSDL S         +    
Sbjct: 357 MLDASDLASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHL 416

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKD 399
             S  TGEGL+ L+  ++  L+           + +  RH +HL   +  L       + 
Sbjct: 417 LLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK---QS 473

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 474 KDLALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 514


>gi|190171268|gb|ACE63704.1| ThdF [Cronobacter genomosp. 1]
          Length = 439

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 148/442 (33%), Positives = 232/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATHPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                 P  +    +  K+D+       S         +S+ T EG++
Sbjct: 299 TTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGLSEVNGHSLIRLSARTNEGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|307825358|ref|ZP_07655577.1| tRNA modification GTPase TrmE [Methylobacter tundripaludum SV96]
 gi|307733533|gb|EFO04391.1| tRNA modification GTPase TrmE [Methylobacter tundripaludum SV96]
          Length = 448

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 164/452 (36%), Positives = 249/452 (55%), Gaps = 16/452 (3%)

Query: 1   MNHEK-ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           M+ E  +TI A++T      + IIR+SG    ++ + +   K   PR A    F   DG 
Sbjct: 1   MDIENLDTIAAIATPPGNGGVGIIRVSGALVPEIAKHLV-NKALTPRLAQYSSFTDDDGS 59

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D G+++ F +P S+TGED  E   HGG  V++ +L  +  +   RLANPGEF+ RAF 
Sbjct: 60  VIDSGIILYFLAPASYTGEDILELQGHGGSVVLDMLLRRVLSL-GARLANPGEFTERAFL 118

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N K+DL +AE++ADLI S TE   R + + M G  S    + +++LT +R ++EA +DF 
Sbjct: 119 NDKLDLAQAEAVADLIESSTEQSVRSAQKSMQGVFSVQINELVEELTELRIYVEAAIDFV 178

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + E++   +   V N I+ + + I       + G ++R+G  +V+ G  NAGKSSL NAL
Sbjct: 179 D-EEIDFLTDGVVENRIVKILHRIGEIQKTAQQGRLLRDGMTVVLAGKPNAGKSSLLNAL 237

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A  + AIVTDI GTTRDVL   + L+G  + I DTAG+RE+D+ +E+EGI+R   E++NA
Sbjct: 238 AGHEAAIVTDIAGTTRDVLKERIQLDGMPLHIIDTAGLRESDNAIEQEGIRRAHEEIKNA 297

Query: 300 DLILLLKEINSKKEIS----FPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGE 349
           D ILLL +    +  S     P   +   I  K DL     E           +S  TG+
Sbjct: 298 DKILLLIDAREAETESLLKTLPSGGNITQIYNKIDLLGLKPEIKQTELGTQIYLSIKTGD 357

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAEN 408
           G+E L   +K  +    +       + +RH+  L++   ++E A    +     +++AE+
Sbjct: 358 GMELLKQHLKQSV-GFNEATDNVFIARRRHIEALNKGHEFVESALDQLRGSQAGELVAED 416

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LR A  SL +ITG    + LL  IFS FCIGK
Sbjct: 417 LRQAQNSLAEITGKFTSDDLLGKIFSSFCIGK 448


>gi|229917461|ref|YP_002886107.1| tRNA modification GTPase TrmE [Exiguobacterium sp. AT1b]
 gi|229468890|gb|ACQ70662.1| tRNA modification GTPase TrmE [Exiguobacterium sp. AT1b]
          Length = 459

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 145/458 (31%), Positives = 243/458 (53%), Gaps = 22/458 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF---FGLDGR 59
           E +TI A+ST     AI I+RLSG    +    +   K        ++ Y    +   G 
Sbjct: 3   EFDTITAISTPMGEGAIGIVRLSGDLAVETVNNVFSGKDLTTVDSHTIHYGTLKYPDTGE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ ++ +  +P++FT ED  E + HGG+  VN +LE +   P++RLA PGEF++RAF 
Sbjct: 63  IVDEVMVSIMRAPKTFTREDVVEINCHGGVVAVNRVLELILDQPDIRLAEPGEFTKRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++T+    ++M  M G LS L  +   +L    + +E ++D+ 
Sbjct: 123 NGRIDLSQAEAVMDLIRAKTDRAMNVAMAQMEGRLSRLVRELRQQLLETIAAVEVNIDYP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  D +  +   V      +K  +   +   + G+I+R G    I+G  N GKSSL N L
Sbjct: 183 EY-DAEEMTQAIVEEKAGEVKRVLEQLLETARQGKILREGLATAIIGRPNVGKSSLMNTL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVT+I GTTRD +   ++++G  +K+ DTAGIRET+DIVE+ G++++   +E A
Sbjct: 242 VQETKAIVTEIAGTTRDTIEEYVNVKGVPLKLIDTAGIRETEDIVERIGVEKSRKALEAA 301

Query: 300 DLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTY---------TEEYDHLIS 344
           DL+LL+        +  +      K ++ I I  K+DL                     S
Sbjct: 302 DLVLLVLNGHEGLTVEDEALFEAVKGMNAIIIINKTDLPQNMDSSKLEKLAAGRPIVATS 361

Query: 345 SFTGEGLEELINKIKSILSNKF-KKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGL 402
               EG++ L   I ++   K  +    +  S+ RH+  + +T+  ++ A  +   +  +
Sbjct: 362 LLLDEGIDALEAAIANLFFAKGVESQDMTYISNARHIQLIKRTIGQIDEALGSAVMNMPI 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  +LR A  +LG+I G    E L+D +FS+FC+GK
Sbjct: 422 DMVQIDLRRAWDTLGEINGDTVQESLIDQLFSQFCLGK 459


>gi|312623584|ref|YP_004025197.1| tRNA modification GTPase trme [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312204051|gb|ADQ47378.1| tRNA modification GTPase TrmE [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 455

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 166/457 (36%), Positives = 249/457 (54%), Gaps = 23/457 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLD 57
           E +TI A+ST      I I+R+SG + F + + + + +K         R A+L   +  D
Sbjct: 2   EFDTIVAISTPIGTGGIGIVRISGKNAFDIAQKLIRSRKYKTVKDIPIRYAALVDVYDGD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +LI F SP S+TGED  E   HGG+ V+  ILE   K    R A PGEF++RA
Sbjct: 62  -EFVDEAILIKFKSPHSYTGEDVVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+S+T + ++ + + + G LS    +    L ++ + IEA +D
Sbjct: 120 FLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSRRIEEISQLLLNMVASIEASID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE E V   S  E+L  I      I   I   + G++I++G   VI+G  N GKSSL N
Sbjct: 180 FSEHE-VDEVSKDEILFTIDAALEKIEKLIKSYETGKVIKSGIYTVIVGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K++ AIVTDIPGTTRDV+   LD+EG  + ++DTAG+R+T+DIVEK G+K+T   +E
Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGVPIILADTAGVRKTEDIVEKIGVKKTLESIE 298

Query: 298 NADLILLLKEINSKKEISFP-----KNIDFIFIGTKSDLYSTYTEEYD--------HLIS 344
            ADL+L + E +   +         KN  FI I  K D     +++            IS
Sbjct: 299 RADLVLFMVESSGILQEDLEIFETIKNKRFIVIVNKIDKEVKVSQDDIKRIFGKEGIFIS 358

Query: 345 SFTGEGLEELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
               + LE +   I   +L+   +     + ++ RH   L +   +L  A  N     LD
Sbjct: 359 VEHDKNLELVEKAIANEVLNQNIETHDSVLITNLRHKELLLKAKEFLVSAKENIYAVPLD 418

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I++ +++ A  SL +ITG    E ++D IFS FCIGK
Sbjct: 419 ILSIDIKNALDSLYQITGKNVTEDMVDRIFSMFCIGK 455


>gi|309390345|gb|ADO78225.1| tRNA modification GTPase trmE [Halanaerobium praevalens DSM 2228]
          Length = 464

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 157/462 (33%), Positives = 249/462 (53%), Gaps = 27/462 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRYFFG----- 55
           +++TI A++T         IR+SGP  +Q+ + I K  K   +     +    +G     
Sbjct: 5   KEDTIAAIATPFGTGGTGKIRISGPQAYQIGDKIFKSVKKEKKLKEQKTYTAHYGEIRDP 64

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
              + +D+ + I+   P SFTGE+  EF  HGG+  +  +LE L      R+A PGEFS+
Sbjct: 65  KTDKTIDEVVAIMMKKPHSFTGENVLEFDCHGGMTPLRAVLE-LVLKQGARMAEPGEFSQ 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ ++I+S+TE    L+++ ++G+LS+   +  D+   I + +EA 
Sbjct: 124 RAFLNGRIDLAQAEAIIEVINSKTEKSLDLAIDQLNGKLSNKVEKIKDQAVEILAHLEAA 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E+E ++ F  +++ +   +LK +    +   K G+I + G K VI+G  N GKSSL
Sbjct: 184 IDYPEDE-IEGFRPEKLGDKFNYLKQETDKLLKSSKQGKIYKEGLKTVIVGKPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N   ++  AIVTDIPGTTRDV+   ++L+G  +KI DTAGIRET D VEK G+++T   
Sbjct: 243 LNYFLEEKRAIVTDIPGTTRDVIEEYINLKGIPLKIIDTAGIRETKDAVEKIGVEKTRKL 302

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-------- 341
            E ADL+L + +IN       ++     KN   I I  K+DL +  T+E           
Sbjct: 303 AEKADLVLFMLDINQGITAEDREIYQLIKNKPVIIIVNKTDLEAKITKEKIKEEFPEPSL 362

Query: 342 -LISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEK 398
             IS    EGL +L + I   IL  + +    ++ +  RH   L +    +E   + +E 
Sbjct: 363 LWISILKEEGLIQLKDNILAEILDEEIEADTEAVITQSRHRDALVKAQSAIERVIVSHET 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D +  +L+     LGKITG    + +LD IF  FC+GK
Sbjct: 423 KMPYDFLTIDLKDFLNGLGKITGETVADDILDRIFKDFCLGK 464


>gi|150398397|ref|YP_001328864.1| tRNA modification GTPase TrmE [Sinorhizobium medicae WSM419]
 gi|205415806|sp|A6UEE9|MNME_SINMW RecName: Full=tRNA modification GTPase mnmE
 gi|150029912|gb|ABR62029.1| tRNA modification GTPase TrmE [Sinorhizobium medicae WSM419]
          Length = 440

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 212/440 (48%), Positives = 295/440 (67%), Gaps = 9/440 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+S+G+ P+ +++IR+SGP+       +C    P  R A+LR     +  ILD GL
Sbjct: 5   DTIYALSSGSPPAGVALIRVSGPATADALARLCGP-LPPARVATLRTIRTRNSDILDSGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED  E  VHGG AVV+ IL+ELA M  LR A  GEF+RRAF+NGK+DL
Sbjct: 64  VLYFPGPASFTGEDCCELQVHGGRAVVSAILDELAAMDGLRHAEAGEFARRAFQNGKLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E LADLI++ETEMQRRL++E   G  S+LY  W  +LTH R+ IEA+LDF++E+D+ 
Sbjct: 124 VEVEGLADLIAAETEMQRRLAVEQSGGGQSALYAGWARRLTHARAMIEAELDFADEDDIP 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  +  DI  L+ +I  HI++  + EIIR+G KIVI G  NAGKSSL NALA++D+A
Sbjct: 184 GSVSAAIWTDIGRLREEIDEHIARAGVAEIIRDGLKIVIAGEPNAGKSSLLNALAQRDIA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+I GTTRDVL++DL L G+ VK+ DTAG+RETD++VE+EGI+R    + +ADL+LLL
Sbjct: 244 IVTEIAGTTRDVLSVDLSLAGFSVKLFDTAGLRETDEVVEREGIRRARQVIADADLVLLL 303

Query: 306 KEINSK---KEISFPKNIDFIFIGTKSD--LYSTYTEEYDHLISSFTGEGLEELINKIKS 360
            E  S     E    K++  I + TK D  +    T E D  +S+ TGEG+++L+  +++
Sbjct: 304 SEKPSDFRLDEWQPGKSVPVIRVATKVDRPMPRWKTSEADVFLSTRTGEGMDKLLAMLQA 363

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
            L +       S+PS +RH+  L Q    L  +    +   L++ AE LR A  +LG+IT
Sbjct: 364 HLPDLAGNTALSMPSRRRHVDCLRQAGAALVRSMEARE---LELQAEQLRQAGDALGRIT 420

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G VDVE+LLD+IFS+FCIGK
Sbjct: 421 GRVDVEKLLDVIFSEFCIGK 440


>gi|298695968|gb|ADI99190.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 459

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 150/460 (32%), Positives = 241/460 (52%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI ++ST     AI I+RLSGP   ++ + + K K       S    +   G I+D   
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINY---GHIIDPES 60

Query: 66  LIV--------FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             V          +P++FT ED  E + HGGI  +N +LE L      R+A PGEF++RA
Sbjct: 61  KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D
Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVEK G++R+   + 
Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299

Query: 298 NADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-------- 343
            ADLIL +   N              KN D I I  K DL           +        
Sbjct: 300 QADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGNTPLIQ 359

Query: 344 -SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
            S    EG++EL  +I+ +      +    +  S+ RH+  L Q  + ++ A    E   
Sbjct: 360 TSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGV 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 420 PMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459


>gi|258423240|ref|ZP_05686132.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9635]
 gi|257846569|gb|EEV70591.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9635]
          Length = 459

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 150/460 (32%), Positives = 241/460 (52%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI ++ST     AI I+RLSGP   ++ + + K K       S    +   G I+D   
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINY---GHIIDPES 60

Query: 66  LIV--------FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             V          +P++FT ED  E + HGGI  +N +LE L      R+A PGEF++RA
Sbjct: 61  KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D
Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVEK G++R+   + 
Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299

Query: 298 NADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYT---------EEYDHL 342
            ADLIL +   N              KN D I I  K DL              +     
Sbjct: 300 QADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQ 359

Query: 343 ISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
            S    EG++EL  +I+ +      +    +  S+ RH+  L Q  + ++ A    E   
Sbjct: 360 TSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGV 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 420 PMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459


>gi|91785808|ref|YP_561014.1| tRNA modification GTPase TrmE [Burkholderia xenovorans LB400]
 gi|122970036|sp|Q13SH7|MNME_BURXL RecName: Full=tRNA modification GTPase mnmE
 gi|91689762|gb|ABE32962.1| tRNA modification GTPase trmE [Burkholderia xenovorans LB400]
          Length = 464

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 150/465 (32%), Positives = 238/465 (51%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G +  Q        +    R+AS   F   
Sbjct: 2   LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTGQTLAARRASYVPFLDA 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGEF
Sbjct: 62  SGDALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEDVITLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  +   +S+ + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPE-EEIDFLEAADARGKLARIRERLGHVLSEARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R+T+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDL---------YSTYTE 337
            E+E AD++L L +  +   +        FP  +  + +  K+DL              +
Sbjct: 301 NEIERADVVLHLLDARTGMTVEDEAIAGRFPAGVPVVRVLNKTDLTGLAPATRALDADLD 360

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
             +  +S+  G+G+  L  ++  I   +         + +RHL  L     +L  A+ + 
Sbjct: 361 LSEVRLSAKQGDGVALLREELLRIAGWQAG-AESVYLARERHLIALRAAEEHLATAAAHA 419

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464


>gi|83591335|ref|YP_431344.1| tRNA modification GTPase TrmE [Moorella thermoacetica ATCC 39073]
 gi|123523726|sp|Q2RFI8|MNME_MOOTA RecName: Full=tRNA modification GTPase mnmE
 gi|83574249|gb|ABC20801.1| tRNA modification GTPase trmE [Moorella thermoacetica ATCC 39073]
          Length = 462

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/464 (32%), Positives = 238/464 (51%), Gaps = 32/464 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP----FPRKASLRYFFGLD--- 57
            +TI A++T      ISIIRLSG     +   + K  K       R  +LR  F +D   
Sbjct: 3   DDTIAALATPPGEGGISIIRLSGSQAIAIVAKVFKPVKGPDLTTTRSHTLRLGFIIDPVS 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  LD+ L+ V  +P S+T ED  E + HGG    + +L+ L      RLA PGEF+RRA
Sbjct: 63  GESLDEVLVSVMRAPHSYTAEDVVEINCHGGALATSRVLQ-LVLRTGARLAEPGEFTRRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ ++I + +      +++ + G LS   G+  ++LT I + +EA +D
Sbjct: 122 FLNGRLDLAQAEAVLEIIRARSSRGLTAALDHLRGNLSRKIGELNERLTGILAALEASMD 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F EE         E L D+  +   +   ++  + G ++  G K+ I+G  N GKSSL N
Sbjct: 182 FPEEV---GEVDPENLADLRRILAGVDRLLATWEEGRLLTEGLKVAIVGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  ++ AIV++IPGTTRD +   L L G+  ++ DTAG+RET D +E  G+ R+   + 
Sbjct: 239 ALLNQERAIVSNIPGTTRDTIEETLQLGGFTCRLIDTAGLRETADELESIGVARSKKAIA 298

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTK------------SDLYSTYTEEY 339
            ADL+L++ ++        ++ +   ++   I IG K            +DL S      
Sbjct: 299 AADLVLVVVDLQTGIQDEDRRVLESVRDKVLIIIGNKLDLVAHDINKKLADLESFAGNYP 358

Query: 340 DHLISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLN 396
              +S+  G+GL+EL  K++ I+            + ++ RH   L     +L  A    
Sbjct: 359 RVAVSALKGKGLDELARKVQEIVLGGRALAGSDEPLITNARHRAALENCREHLASAIKAW 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+    D+IA +L  A+  LG+I G    E LLD IFS FCIGK
Sbjct: 419 EEGLPEDLIAIDLWSAADYLGEIIGTTAREDLLDRIFSDFCIGK 462


>gi|326801518|ref|YP_004319337.1| tRNA modification GTPase mnmE [Sphingobacterium sp. 21]
 gi|326552282|gb|ADZ80667.1| tRNA modification GTPase mnmE [Sphingobacterium sp. 21]
          Length = 456

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 160/453 (35%), Positives = 255/453 (56%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF----GLDGRIL 61
           +TI A++T     AI++IRLSGP   ++   + K K    ++AS    F      DG+IL
Sbjct: 7   DTIVALATPTGSGAIAVIRLSGPQAIEIVNGVFKGKD-LSKQASHTVHFGTIRDEDGKIL 65

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L  +F +P S+T E+  E   HG   +V  I++ L      R A PGEF+ RAF +G
Sbjct: 66  DEVLASIFIAPHSYTRENVVEVSTHGSKYIVESIIK-LFIRKGARAAKPGEFTLRAFLHG 124

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
            +DL +AE++ADLI+S +    +++M+ M G  S+   Q  ++L H  S IE +LDFSE 
Sbjct: 125 GMDLSQAEAVADLIASNSAASHQVAMQQMRGGFSNELKQLREQLIHFASMIELELDFSE- 183

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           EDV+  +  ++ + IL +   +   I   + G +++NG  IVI G  N GKS+L NAL  
Sbjct: 184 EDVEFANRSQLKDLILEIIKVLHRLILSFEQGNVLKNGVPIVIAGKPNVGKSTLLNALLN 243

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIV+DI GTTRD +  +++++G   +  DTAGIR+T+DI+E +G++RT  +++ A L
Sbjct: 244 EERAIVSDIAGTTRDTIEDEINIQGVSFRFIDTAGIRDTEDIIEAKGVERTREKMKKARL 303

Query: 302 ILLLKEI--NSKKEIS------FPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFTG 348
           ++ L +   ++ +E+S            F+ +  K DL S      Y       IS+ +G
Sbjct: 304 VIYLVDPVDDAFEEVSIQVADLILLRTPFVLVINKKDLLSPDALAQYEPLNPVFISAKSG 363

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAE 407
           +G+E L  ++ + +S +   +   + ++ RH+  L +T   LE      +     D +A 
Sbjct: 364 DGVEALKEELLNQVSLRNINVDDVMVTNIRHVEALLKTQASLEKVLYGIDNPITSDFLAM 423

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++R A   LG+ITG V  E LLD IFSKFCIGK
Sbjct: 424 DIRQALHHLGEITGQVSTEDLLDNIFSKFCIGK 456


>gi|205829166|sp|Q0BAQ4|MNME_BURCM RecName: Full=tRNA modification GTPase mnmE
          Length = 464

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 152/466 (32%), Positives = 243/466 (52%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  ++  PR AS   F  
Sbjct: 2   LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCG-QRLAPRHASYVPFVD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 61  EHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPE-EEIDFLEAADARGKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIART 299

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +        +      FP  +  + +  K+DL          +   
Sbjct: 300 WSEIERADVVLHLLDSRTGMTADDEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPAAAG 359

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
           +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+  
Sbjct: 360 DLTEVHLSAKRGDGIDMLRAELLRIAGWQAG-AEGVYLARERHLIALRAAQEHLAQAADH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|302872910|ref|YP_003841546.1| tRNA modification GTPase TrmE [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575769|gb|ADL43560.1| tRNA modification GTPase TrmE [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 455

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 164/457 (35%), Positives = 247/457 (54%), Gaps = 23/457 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLD 57
           E +TI A+ST      I I+R+SG   + V   + K +K         R A+L   +  D
Sbjct: 2   EFDTIVAISTPVGTGGIGIVRISGKDAYDVAGKLVKSRKYKSIHDIPVRYAALVDVYDGD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +LI F SP S+TGED  E   HGG+ V+  ILE   K    R A PGEF++RA
Sbjct: 62  -EFVDEAILIKFKSPRSYTGEDVVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGKIDL +AE++ D+I+S+T++ ++ + + + G LS    +    L ++ + IEA +D
Sbjct: 120 FLNGKIDLSQAEAVIDIINSKTKLLQQNAAKQLKGMLSQRIEEISQLLLNLVATIEASID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE E V   S  E+L+ I      I   I   + G+ I++G   VI+G  N GKSSL N
Sbjct: 180 FSEHE-VDEVSHDEILSTIDDALAKIEKLIKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K++ AIVTDIPGTTRDV+   LD+EG  + ++DTAG+R T+D+VEK G++RT   +E
Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGLPIILADTAGVRRTEDVVEKIGVERTLKSIE 298

Query: 298 NADLILLLKEINSKKEISFP-----KNIDFIFIGTKSDLYSTYTEEYD--------HLIS 344
            ADL+L + E +   +         K+  F+ +  K D     +++            IS
Sbjct: 299 RADLVLFMVESSGILQEDLEIFETIKDKRFVVLVNKIDREVKVSQDDIKRIFGKEGIFIS 358

Query: 345 SFTGEGLEELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
               + LE +   I   +LS   +     + ++ RH   L +   +L  A  N     LD
Sbjct: 359 VEHDKNLELVEKAIAHEVLSQNIEAFDSVLITNLRHKELLLKAKEFLLSAKANIFSVPLD 418

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I++ +++ A  +L +ITG    E ++D IFS FCIGK
Sbjct: 419 ILSIDIKNALENLYQITGKNVTEDMVDRIFSMFCIGK 455


>gi|294794209|ref|ZP_06759345.1| tRNA modification GTPase TrmE [Veillonella sp. 3_1_44]
 gi|294454539|gb|EFG22912.1| tRNA modification GTPase TrmE [Veillonella sp. 3_1_44]
          Length = 461

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 149/460 (32%), Positives = 244/460 (53%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGL-D 57
            +TI A++T      + IIR+SG   F +   + K     P      R            
Sbjct: 4   DDTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSTGTVPLMDRQNRTIQYGTIVDPMT 63

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+ L+++   P S+T ED  E   HGGI  V  IL+ L    N+R+A  GEF++RA
Sbjct: 64  NKTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLV-NHNVRMAEAGEFTKRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I ++TE    L++  + G +SS      ++L  + + +E  +D
Sbjct: 123 FMNGRIDLTQAEAIIDIIEAKTEDSLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTID 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E ED+++ +S+EV + +  +   +   +S    G +IR+G   VI+G  NAGKSSL N
Sbjct: 183 YPE-EDIEDVTSQEVRDQLQPILKAMEDLLSTANTGRLIRDGITTVIVGCPNAGKSSLMN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL +++ AIVTDIPGTTRD +   + +EG  +++ DTAGIR+T D VE  G++R    + 
Sbjct: 242 ALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYIN 301

Query: 298 NADLILLLKEINS---KKEISFP---KNIDFIFIGTKSDLYSTYTEEYDHLISSFT---- 347
            AD++L + + ++    +EI        ++ I +  KSD+    T+E      +FT    
Sbjct: 302 KADIVLCVIDGSTPLNPEEIEILTSVSGLNTIVLLNKSDVAQVVTDENIKEHGNFTAIER 361

Query: 348 -----GEGLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
                GEG   L   ++ ++     K    ++ S+ RH+  + Q    +E A S  +   
Sbjct: 362 ISAKEGEGSAVLSKWVQELVYGGRVKQDNRAMISNVRHISLMEQAKAQVEQALSSIDMGM 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D +A +LR A   LG ITG    E ++D +FS+FC+GK
Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461


>gi|172062136|ref|YP_001809788.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MC40-6]
 gi|205829123|sp|B1YQJ5|MNME_BURA4 RecName: Full=tRNA modification GTPase mnmE
 gi|171994653|gb|ACB65572.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MC40-6]
          Length = 464

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 152/466 (32%), Positives = 243/466 (52%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  ++  PR AS   F  
Sbjct: 2   LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCG-QQLAPRHASYVPFVD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 61  EHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPE-EEIDFLEAADARGKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIART 299

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +        +      FP  +  + +  K+DL          +   
Sbjct: 300 WSEIERADVVLHLLDSRTGMTADDEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPAAAG 359

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
           +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+  
Sbjct: 360 DLTEVHLSAKRGDGIDMLRAELLRIAGWQAG-AEGVYLARERHLIALRAAQEHLAQAADH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|167587873|ref|ZP_02380261.1| tRNA modification GTPase TrmE [Burkholderia ubonensis Bu]
          Length = 464

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/466 (32%), Positives = 244/466 (52%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  ++  PR AS   F  
Sbjct: 2   LATDSDPIVAIATAAGRGGIGVVRVSFGRRGEAAALPLIDALCG-QRLAPRHASYVPFLD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 61  EHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRSAGLRLAEPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHTLVDDVITLRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPE-EEIDFLEAADARGKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIART 299

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +        +      FP  +  + +  K+DL          +   
Sbjct: 300 WSEIERADVVLHLLDARGGMTADDEAIAARFPAGVPVVRVLNKTDLTGAPASVAHPAAQG 359

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
           +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L +A+  
Sbjct: 360 DLTEVRLSAKRGDGIDLLRGELLRIAGWQAG-AEGVYLARERHLVALRAAQEHLALAADH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 464


>gi|161526321|ref|YP_001581333.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616]
 gi|189348964|ref|YP_001944592.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616]
 gi|160343750|gb|ABX16836.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616]
 gi|189332986|dbj|BAG42056.1| tRNA modification GTPase [Burkholderia multivorans ATCC 17616]
          Length = 464

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/466 (32%), Positives = 244/466 (52%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  ++  PR AS   F  
Sbjct: 2   LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPMIDALCG-QRLAPRHASYVPFLD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 61  AQGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDVGRAVGLRLAEPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D + ++R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVINLRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPE-EEIDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIART 299

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +        +      FP  +  + +  K+DL          +   
Sbjct: 300 WSEIERADVVLHLLDSRTGMTADDDAIAARFPAGVPVVRVLNKTDLTGVPASVAHPAAEG 359

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+ +
Sbjct: 360 DLTEVHLSAKRGDGIDLLRAELLRIAGWQAG-AEGVYLARERHLMALRAAQDHLARAAEH 418

Query: 397 EKD--CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +     LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|61679425|pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
           Maritima
 gi|61679427|pdb|1XZQ|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
           Maritima Complexed With 5-Formyl-Thf
          Length = 482

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 157/454 (34%), Positives = 251/454 (55%), Gaps = 24/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDKG 64
           +TI AV+T     AI+I+RLSGP  +++ +   + + K  PRKA   +    +G  +D+ 
Sbjct: 34  DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIH-ENGEDVDEV 92

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ + SP+S+TGED  E   HGG  VV  +L+ L      R+A PGEF++RAF NGK+D
Sbjct: 93  VVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLD-LFLKSGARMAEPGEFTKRAFLNGKMD 151

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE++ DLI +++E   +LS+  + G L         +L  + + I  +LD+    D 
Sbjct: 152 LTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYP---DE 208

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              ++ EV+  +  +K  ++  + +   G ++  G ++VI+G  N GKS+L N L  +D 
Sbjct: 209 IETNTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDR 268

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIVTDIPGTTRDV++ ++ + G L +I DTAG+R ET+D+VE+ GI+RT  E+E AD++L
Sbjct: 269 AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVL 328

Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----------ISSFT 347
            + + +S      +K +   KN  ++ +  K D+     EE              IS+  
Sbjct: 329 FVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALK 388

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIA 406
           GEGLE+L   I       F++   S+ ++ R    L     +LE A  + K    +D+ +
Sbjct: 389 GEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKEGMPVDMAS 448

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  A   L ++TG    E LLD IFS FC+GK
Sbjct: 449 IDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 482


>gi|15928297|ref|NP_375830.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           N315]
 gi|21284359|ref|NP_647447.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49484907|ref|YP_042131.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|88196667|ref|YP_501498.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148269143|ref|YP_001248086.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150395225|ref|YP_001317900.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           JH1]
 gi|221141513|ref|ZP_03566006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253316838|ref|ZP_04840051.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253730397|ref|ZP_04864562.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733841|ref|ZP_04868006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257424194|ref|ZP_05600623.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426871|ref|ZP_05603273.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429507|ref|ZP_05605894.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432154|ref|ZP_05608517.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435115|ref|ZP_05611166.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           M876]
 gi|257793536|ref|ZP_05642515.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9781]
 gi|258411158|ref|ZP_05681437.1| tRNA modification GTPase trmE [Staphylococcus aureus A9763]
 gi|258420938|ref|ZP_05683872.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9719]
 gi|258438577|ref|ZP_05689800.1| tRNA modification GTPase trmE [Staphylococcus aureus A9299]
 gi|258443967|ref|ZP_05692305.1| tRNA modification GTPase mnmE [Staphylococcus aureus A8115]
 gi|258446217|ref|ZP_05694377.1| tRNA modification GTPase mnmE [Staphylococcus aureus A6300]
 gi|258449124|ref|ZP_05697230.1| tRNA modification GTPase trmE [Staphylococcus aureus A6224]
 gi|258454398|ref|ZP_05702366.1| tRNA modification GTPase TrmE [Staphylococcus aureus A5937]
 gi|269204349|ref|YP_003283618.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894277|ref|ZP_06302507.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8117]
 gi|282907045|ref|ZP_06314893.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282910024|ref|ZP_06317832.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912272|ref|ZP_06320068.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282912912|ref|ZP_06320704.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918066|ref|ZP_06325816.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           D139]
 gi|282921288|ref|ZP_06329006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           C427]
 gi|282922540|ref|ZP_06330230.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           C101]
 gi|282927748|ref|ZP_06335362.1| tRNA modification GTPase TrmE [Staphylococcus aureus A10102]
 gi|283767788|ref|ZP_06340703.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
           H19]
 gi|283959482|ref|ZP_06376923.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293497965|ref|ZP_06665819.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293511555|ref|ZP_06670249.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           M809]
 gi|293550164|ref|ZP_06672836.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295406862|ref|ZP_06816666.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8819]
 gi|295429295|ref|ZP_06821917.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275689|ref|ZP_06858196.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297209454|ref|ZP_06925852.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297245897|ref|ZP_06929759.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8796]
 gi|297589203|ref|ZP_06947844.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300911478|ref|ZP_07128927.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304379946|ref|ZP_07362675.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|54039754|sp|P66973|MNME_STAAW RecName: Full=tRNA modification GTPase mnmE
 gi|54042258|sp|P66972|MNME_STAAN RecName: Full=tRNA modification GTPase mnmE
 gi|73919889|sp|Q6GD92|MNME_STAAR RecName: Full=tRNA modification GTPase mnmE
 gi|122538496|sp|Q2FUQ2|MNME_STAA8 RecName: Full=tRNA modification GTPase mnmE
 gi|189036211|sp|A6U595|MNME_STAA2 RecName: Full=tRNA modification GTPase mnmE
 gi|189036212|sp|A5IWD7|MNME_STAA9 RecName: Full=tRNA modification GTPase mnmE
 gi|13702669|dbj|BAB43809.1| possible thiophene and furan oxidation protein [Staphylococcus
           aureus subsp. aureus N315]
 gi|21205803|dbj|BAB96495.1| possible thiophene and furan oxidation protein [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49243036|emb|CAG41770.1| probable tRNA modification GTPase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|87204225|gb|ABD32035.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147742212|gb|ABQ50510.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149947677|gb|ABR53613.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           JH1]
 gi|253725877|gb|EES94606.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728144|gb|EES96873.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257273212|gb|EEV05314.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276502|gb|EEV07953.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279988|gb|EEV10575.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283033|gb|EEV13165.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285711|gb|EEV15827.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           M876]
 gi|257787508|gb|EEV25848.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9781]
 gi|257840043|gb|EEV64508.1| tRNA modification GTPase trmE [Staphylococcus aureus A9763]
 gi|257843128|gb|EEV67543.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9719]
 gi|257848136|gb|EEV72128.1| tRNA modification GTPase trmE [Staphylococcus aureus A9299]
 gi|257850851|gb|EEV74795.1| tRNA modification GTPase mnmE [Staphylococcus aureus A8115]
 gi|257855043|gb|EEV77986.1| tRNA modification GTPase mnmE [Staphylococcus aureus A6300]
 gi|257857557|gb|EEV80452.1| tRNA modification GTPase trmE [Staphylococcus aureus A6224]
 gi|257863492|gb|EEV86252.1| tRNA modification GTPase TrmE [Staphylococcus aureus A5937]
 gi|262076639|gb|ACY12612.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269942298|emb|CBI50713.1| probable tRNA modification GTPase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282314761|gb|EFB45147.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           C101]
 gi|282315703|gb|EFB46087.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           C427]
 gi|282318351|gb|EFB48711.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           D139]
 gi|282323012|gb|EFB53331.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           M899]
 gi|282323968|gb|EFB54284.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326090|gb|EFB56395.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329944|gb|EFB59465.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590508|gb|EFB95586.1| tRNA modification GTPase TrmE [Staphylococcus aureus A10102]
 gi|282763322|gb|EFC03452.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8117]
 gi|283461667|gb|EFC08751.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
           H19]
 gi|283471926|emb|CAQ51137.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283789074|gb|EFC27901.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285818375|gb|ADC38862.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
           aureus 04-02981]
 gi|290919211|gb|EFD96287.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096896|gb|EFE27154.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291465513|gb|EFF08045.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           M809]
 gi|294968327|gb|EFG44352.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8819]
 gi|295127054|gb|EFG56698.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296885915|gb|EFH24850.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297177262|gb|EFH36515.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8796]
 gi|297577714|gb|EFH96427.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300887657|gb|EFK82853.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302334326|gb|ADL24519.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302752589|gb|ADL66766.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304341526|gb|EFM07436.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|312436861|gb|ADQ75932.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312831050|emb|CBX35892.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129541|gb|EFT85533.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195224|gb|EFU25612.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|323439701|gb|EGA97419.1| tRNA modification GTPase TrmE [Staphylococcus aureus O11]
 gi|323443274|gb|EGB00891.1| tRNA modification GTPase TrmE [Staphylococcus aureus O46]
 gi|329315432|gb|AEB89845.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329725659|gb|EGG62138.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           21172]
 gi|329731690|gb|EGG68050.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           21189]
 gi|329732386|gb|EGG68736.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           21193]
          Length = 459

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 150/460 (32%), Positives = 241/460 (52%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI ++ST     AI I+RLSGP   ++ + + K K       S    +   G I+D   
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINY---GHIIDPES 60

Query: 66  LIV--------FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             V          +P++FT ED  E + HGGI  +N +LE L      R+A PGEF++RA
Sbjct: 61  KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D
Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVEK G++R+   + 
Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299

Query: 298 NADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYT---------EEYDHL 342
            ADLIL +   N              KN D I I  K DL              +     
Sbjct: 300 QADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQ 359

Query: 343 ISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
            S    EG++EL  +I+ +      +    +  S+ RH+  L Q  + ++ A    E   
Sbjct: 360 TSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGV 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 420 PMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459


>gi|254520702|ref|ZP_05132758.1| tRNA modification GTPase TrmE [Clostridium sp. 7_2_43FAA]
 gi|226914451|gb|EEH99652.1| tRNA modification GTPase TrmE [Clostridium sp. 7_2_43FAA]
          Length = 459

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 159/459 (34%), Positives = 255/459 (55%), Gaps = 22/459 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD- 57
            E +TI A+ST      I+IIR+SG    ++   I + K        +  ++RY   +D 
Sbjct: 2   KEFDTICAISTAIGEGGIAIIRVSGDEALEIVSKIFRAKSGKDIRDMKTYTMRYGHIVDI 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ++D+ ++     P+SFT ED+ E + HGG+   N +LE + K    R+A PGEF++
Sbjct: 62  DKEDLIDEVIISYMKGPKSFTAEDTVEINCHGGVTSTNKVLEMVIKA-GARIAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI+++TE+  + ++   +G LS    +  + L ++ + IE  
Sbjct: 121 RAFLNGRIDLSQAEAVMDLITAKTELAMKSALMQSTGSLSKKINKLREYLLNVLALIEYA 180

Query: 176 LDFSEE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +DF+E+ E+V       V + +    +D+S  +     G+IIR+G  + I+G  N GKSS
Sbjct: 181 VDFTEDDEEVDPTIPLRVKDSLEKACDDMSKLLKGADEGKIIRDGLSLAIVGKPNVGKSS 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L K+  AIVTDI GTTRDV+   ++L+G  VKI DTAGIRET+DIVEK G++++  
Sbjct: 241 LLNVLLKEKRAIVTDIAGTTRDVIEEYINLDGIPVKIIDTAGIRETEDIVEKIGVEKSKE 300

Query: 295 EVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHL 342
           ++  ADL+LL+ + + + +      I   KN + I +  K DL +   +      E    
Sbjct: 301 KINEADLVLLVLDSSRELDKEDIEIIEAIKNKNSIVLLNKIDLENKLDKSLLNNFENIIK 360

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG- 401
           IS+    G++ L N+IK++  N        I S+ RH   L +     + A +  K+   
Sbjct: 361 ISAKEDVGIDGLKNEIKNMFFNGKIDSESLIVSNSRHKQALIRAKENCDDALIRVKNNEF 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD+I+  +  A  +LG+ITG    E L++ IF +FC GK
Sbjct: 421 LDLISIYVTAALKALGEITGSELEEDLVNKIFKEFCCGK 459


>gi|227498804|ref|ZP_03928944.1| thiophene and furan oxidation protein thdF [Acidaminococcus sp.
           D21]
 gi|226904256|gb|EEH90174.1| thiophene and furan oxidation protein thdF [Acidaminococcus sp.
           D21]
          Length = 455

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 137/456 (30%), Positives = 236/456 (51%), Gaps = 22/456 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDGRI 60
           ++TI A++T     A+ IIR+SGP   ++   I + K+P     PR     +     G  
Sbjct: 2   EDTISAIATALGVGAVGIIRVSGPESLRLVNRIFRAKEPLSSSRPRYLQYGHIHDGKGVD 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L +  P P S+TGED  E   HGG   +  IL  L      R A PGEF++RAF N
Sbjct: 62  VDEVLAVYMPGPHSYTGEDVVEIQCHGGREALKEIL-RLTFSEGARPAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL EAE++ D+I++++      +  G  G LS    +   +L  +   +EA +D+ E
Sbjct: 121 GRLDLTEAEAVMDIINAKSRRALVAAGRGHKGALSRSIREIRGRLRDLVVHLEAIIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +D+++ +  E    +    + +     +G+ G+I+R G +I I+G  N GKSSL N L 
Sbjct: 181 -DDIEDVTYDETEGVLQQCYDAVMQLRKKGETGQILREGLRIAIVGRPNVGKSSLLNRLL 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + D AIV++IPGTTRD++   + L+G  + ++DTAG+R+T+D VE+ G+KR+   +E+A+
Sbjct: 240 QTDRAIVSNIPGTTRDIIEEQMTLDGIPLVLTDTAGLRDTEDYVEQIGVKRSRAILEDAE 299

Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH--------LISSF 346
           L+L++ +         +K ++  KN   + +  KSDL    + E            +S  
Sbjct: 300 LVLVVLDSASPLTDEDRKLLAAVKNRPHLVLLNKSDLAPALSREEVEALSGGDVLSLSVK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404
            G G++++   ++  +  +       +   + R    L Q   +L E           D 
Sbjct: 360 DGAGMDQVGIHLRHFVMGEGSDAEMGLMTQNARQGMLLEQAAHHLAETLRDARAHLPYDC 419

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +L      LG+ITG    E++++ IF++FC+GK
Sbjct: 420 LTIDLTQVLHELGEITGDDVPEEIINEIFAQFCVGK 455


>gi|210614312|ref|ZP_03290160.1| hypothetical protein CLONEX_02374 [Clostridium nexile DSM 1787]
 gi|210150728|gb|EEA81737.1| hypothetical protein CLONEX_02374 [Clostridium nexile DSM 1787]
          Length = 457

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/456 (33%), Positives = 239/456 (52%), Gaps = 23/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDGR-I 60
           +TI A++T    S I I+R+SG   F++ + I K KK       +  ++ Y + +DG   
Sbjct: 4   DTIAAIATAMTNSGIGIVRMSGDEAFEIIQKIYKGKKEKYFQEEKGYTIHYGYIVDGEET 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+++   P SFTGED+ E + HGG+ V+  ILE + K    R A PGEF++RAF N
Sbjct: 64  IDEVLVMIMRGPHSFTGEDTVEINCHGGVYVMKRILETVIK-YGARPAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ D+I S++E   + S+  + G +     +  +++ +  +FIE  LD  E
Sbjct: 123 GRMDLSQAEAVIDVIHSKSEYALKSSVSQLKGTVHQKIKKIREEILYHTAFIETALDDPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              V  +  +  +     L+   +  I     G II+ G K VI+G  NAGKSSL N L 
Sbjct: 183 HISVDGYGGELKVVVDKLLEELKALLI-SSDNGRIIKEGIKTVIVGKPNAGKSSLLNVLV 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDI GTTRDVL   + L+G  + I DTAGIR T+DIVEK G+ +       AD
Sbjct: 242 GEDRAIVTDIEGTTRDVLEESIQLQGISLNIMDTAGIRNTEDIVEKIGVDKAKEHANEAD 301

Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLISSF 346
           LI+ + +       N  + I   ++   + +  KSDL          +Y E+    IS+ 
Sbjct: 302 LIIYVVDASRNLDENDMEIIQMIQDKKAVILLNKSDLATVVSKDMLKSYIEKPMIEISAK 361

Query: 347 TGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDI 404
              G++EL   +K +  +           ++ RH   +      LE  ++  E +   D 
Sbjct: 362 EESGIKELEQTLKDMFFHGDISFNDEVYITNIRHKAAIQDAYDSLEKVNMSIENNMPEDF 421

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 422 YSIDLLDAYESLGSITGETIGEDLVNEIFSKFCMGK 457


>gi|282848771|ref|ZP_06258166.1| tRNA modification GTPase TrmE [Veillonella parvula ATCC 17745]
 gi|282581557|gb|EFB86945.1| tRNA modification GTPase TrmE [Veillonella parvula ATCC 17745]
          Length = 461

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 148/460 (32%), Positives = 245/460 (53%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGL-D 57
            +TI A++T      + IIR+SG   F +   + K     P      R            
Sbjct: 4   DDTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSVGTVPLMDRQNRTIQYGTIVDPAT 63

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+ L+++   P S+T ED  E   HGGI  V  IL+ L    N+R+A  GEF++RA
Sbjct: 64  NKTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLV-NHNVRMAEAGEFTKRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I ++TE    L++  + G +SS      ++L  + + +E  +D
Sbjct: 123 FMNGRIDLTQAEAIIDIIEAKTEDSLSLAVAQLDGTVSSFVKDVREQLIAMIAHLEVTID 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E ED+++ +S+EV   +  +   +   +S    G +IR+G   VI+G  NAGKSSL N
Sbjct: 183 YPE-EDIEDVTSQEVREQLEPILKAMEDLLSTANTGRLIRDGITTVIVGRPNAGKSSLMN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL +++ AIVTDIPGTTRD +   + ++G  +++ DTAGIR+T D VE  G++R    + 
Sbjct: 242 ALLRENRAIVTDIPGTTRDSIEEYMTVKGISLRLIDTAGIRDTQDTVEALGVERARDYIN 301

Query: 298 NADLILLLKEINS---KKEISFP---KNIDFIFIGTKSDLYSTYTEEYDHLISSFT---- 347
            AD++L + + ++    +EI        ++ I +  KSD+    T+E      +FT    
Sbjct: 302 KADIVLCVIDGSTPLNPEEIEILTSVSGLNTIVLLNKSDVAQVVTDENIKEHGTFTAIER 361

Query: 348 -----GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
                GEG   L   ++ ++   + K+   ++ S+ RH+  + Q    +E A S  +   
Sbjct: 362 ISAKEGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKVQVEQALSSIDMGM 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D +A +LR A   LG ITG    E ++D +FS+FC+GK
Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461


>gi|284049397|ref|YP_003399736.1| tRNA modification GTPase TrmE [Acidaminococcus fermentans DSM
           20731]
 gi|283953618|gb|ADB48421.1| tRNA modification GTPase TrmE [Acidaminococcus fermentans DSM
           20731]
          Length = 457

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 134/457 (29%), Positives = 235/457 (51%), Gaps = 23/457 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK----KPFPRKASLRYFFGLDGRI 60
            +TI A++T     +I +IR+SGP    +       +    +   RK    +     G++
Sbjct: 3   DDTISAIATALGVGSIGVIRVSGPDSLAIVRRFFAGREQPGRENARKLLYGHILDGKGQV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L +  P P S+TGED  E   HGG   +  IL  L      R A PGEF++RAF N
Sbjct: 63  VDEVLAVYMPGPHSYTGEDVCEIQCHGGREALQEIL-RLTFQAGARPAEPGEFTKRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL EAES+ D+I++ +      +  G  G LS         L  +   +EA +D+ E
Sbjct: 122 GRLDLAEAESVMDIINARSRQALAAANRGHEGGLSRQVKALRKTLRDLVVQLEACIDYPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +D++  +    ++ +   K  + + + +G  G I+R G +  I+G  N GKSSL N+L 
Sbjct: 182 -DDIEEVTYDRTVSTLEEGKKAVETLVRRGTAGRILREGLRTAIVGRPNVGKSSLLNSLL 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + D AIV++IPGTTRD++   + + G  + ++DTAG+R+T D+VEK G++R+   +E+A 
Sbjct: 241 QADRAIVSNIPGTTRDIIEEQMTIGGIPLVLTDTAGLRDTSDLVEKIGVERSRAALEDAQ 300

Query: 301 LILLLKEIN------SKKEISFPKNIDFIFIGTKSDLY---------STYTEEYDHLISS 345
           L L++ + +       ++ +   ++   + +  K+DL           TY E+   ++S 
Sbjct: 301 LALVVLDGSQPLDPEDRQLLESLRDRKKLILVNKADLPLALDVEGLRKTYGEKDVLVLSV 360

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLD 403
             G+GLE++   ++  +          S+  + R    L + ++ LE A     +    D
Sbjct: 361 KEGKGLEQVEQWLRDFVYGEGSDSESSSMTQNARQQNLLEKALQSLEDALAGARQHLPYD 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  +L  A   LG+ITG    ++++D IF++FC+GK
Sbjct: 421 CLTIDLTQALHDLGEITGEDVPDEIIDEIFAQFCVGK 457


>gi|289548080|ref|YP_003473068.1| tRNA modification GTPase TrmE [Thermocrinis albus DSM 14484]
 gi|289181697|gb|ADC88941.1| tRNA modification GTPase TrmE [Thermocrinis albus DSM 14484]
          Length = 450

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 167/454 (36%), Positives = 258/454 (56%), Gaps = 18/454 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKASLRYFFGLDGR 59
           M  ++E I A++T    SAI ++RLSG    + +  F+  K    PR A L      +GR
Sbjct: 1   MIRQREPIVALATPYGESAIGVLRLSGKGVLEKIKPFLKLKGAVKPRYAHLVTLVDEEGR 60

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+G+L+ +PSP+S+TGED  E  +HG   +++  LE L     +RLA PGEF+RRAF 
Sbjct: 61  EIDEGILVFYPSPKSYTGEDMIELSLHGNPLILHRALE-LFLSAGIRLAEPGEFTRRAFL 119

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DLL+AE++ADLI + TE+  R ++  + GELS    +   +L  + +++EAD++FS
Sbjct: 120 NGKMDLLQAEAVADLIGARTELAVRCALRQLRGELSDRIERIRSQLLELIAYVEADIEFS 179

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +D+   S +E+L  +  L  D+   ++  ++G  +R G  + I+G  N GKSSLFNAL
Sbjct: 180 E-QDIPTLSREEILKRLEDLIKDLEDLLATARVGNFLRKGLNLAIVGKPNVGKSSLFNAL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
                AIVTDIPGTTRD L    ++ G  + + DTAGIR T D VE+ G++R+  ++ +A
Sbjct: 239 LGSQRAIVTDIPGTTRDFLQEQWNIGGIPINLVDTAGIRTTTDPVEQMGVQRSIEKLGSA 298

Query: 300 DLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTG 348
            ++LL+ + +   E       S  K+ D I +  K DL      +    E+  ++S+ TG
Sbjct: 299 HIVLLVVDGSKPLEEEDLSIYSMVKDKDHIVVLNKKDLGVCEDTAKAFPEF-VMVSAKTG 357

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406
           +GLE+L  +I       +     SI    RH   L  ++  +++    L E+D   +I+ 
Sbjct: 358 DGLEDLRKEILRRA-GFYTAEGGSIYVSARHANLLQNSLSVIKLVYQQLREQDISPEILM 416

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LR A   L ++ G V  E +LD IFS FCIGK
Sbjct: 417 LYLREAVHYLEEVIGTVTTEDVLDSIFSSFCIGK 450


>gi|328950860|ref|YP_004368195.1| tRNA modification GTPase mnmE [Marinithermus hydrothermalis DSM
           14884]
 gi|328451184|gb|AEB12085.1| tRNA modification GTPase mnmE [Marinithermus hydrothermalis DSM
           14884]
          Length = 437

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 151/445 (33%), Positives = 238/445 (53%), Gaps = 15/445 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGL 56
           +    +TI A++T     AI ++RLSGP   +V   + +   P      R +  R     
Sbjct: 3   LPSLNDTIAAIATPPGKGAIGVVRLSGPQALEVAARLWRGADPRTLPGGRFSYGRVVDPE 62

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G +LD+GLL+VF +P S+TG+D+ EF VHG  AV+  +LE   +    R ANPGE++ R
Sbjct: 63  TGEVLDEGLLLVFRAPRSYTGQDAVEFQVHGSPAVLRRVLEACLQA-GARPANPGEYTLR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           A+ NG++DL +AE++  LI +E++  RR ++ G+S  LS+       +L  + + I+A L
Sbjct: 122 AYLNGRMDLAQAEAVLALIEAESDAARRQALRGLSRALSTKIEALAQRLLDLLAHIQALL 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ EE    + + + +      +  +I   ++    G +  +G +I ++G  NAGKSSL 
Sbjct: 182 DYPEEGVEPHEAERVI----AQVLAEIERLLATTAAGRVAAHGARITLVGAPNAGKSSLL 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   D AIVTDIPGTTRD L   L++ G  V   DTAG+RET+D VE+ G++R     
Sbjct: 238 NALLGYDRAIVTDIPGTTRDYLEAPLEIGGVPVIAVDTAGVRETEDAVERAGVERALELA 297

Query: 297 ENADLILLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
             ADLIL L +    K        +    + TK+DL + + +     +SS TG GLE L 
Sbjct: 298 READLILFLADRTQPKPTPPELPWERTLKVATKADLPALWEDPEYLSVSSKTGAGLEALR 357

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
             I++ L     +    I  ++RH   L +   +L    L  +    D++  +L+ A  +
Sbjct: 358 RAIRTRLLGGLSEGEVWIA-NERHAEALREARAHL----LEARHAPEDLMGLSLQAAVEA 412

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           L +I G    E+++D +F  FC+GK
Sbjct: 413 LNRILGKDVPEEVVDRVFRNFCVGK 437


>gi|260101882|ref|ZP_05752119.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DSM 20075]
 gi|260084310|gb|EEW68430.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DSM 20075]
 gi|328463992|gb|EGF35490.1| tRNA modification GTPase TrmE [Lactobacillus helveticus MTCC 5463]
          Length = 461

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 139/459 (30%), Positives = 236/459 (51%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+R+SG    ++   + K      +  +    +G       
Sbjct: 6   TEFDTIAAISTPIGEGGISIVRMSGEDAVKIANEVFKGAD-LTKVPTHTIHYGHIVDPDT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RA
Sbjct: 65  DKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQ-LLLSHGARMADPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R++++  ++G L         ++    + +E ++D
Sbjct: 124 FVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILDTLANVEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D    ++K++ +    +   I   +   + G+I+RNG    I+G  N GKSSL N
Sbjct: 184 YPEY-DADTVTAKQMTDTAKSVIKKIDRLLKTAQEGKILRNGLATAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  TDD VEK G++R+   ++
Sbjct: 243 YLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVERSKKALD 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY--------TEEYDHLI 343
            ADL+LLL + +       K  I   K+   I +  KSDL            T     L 
Sbjct: 303 RADLVLLLIDASQELTAEDKALIEETKDKKRIIVLNKSDLGQKITVDEMKKQTGSDVILT 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDCG 401
           S    + L++L   I  +     +      + +++R    L++  + L+      E    
Sbjct: 363 SILKEKNLDKLEELINKLFFAGIENSNDQVMVTNQRQTSLLTKAKKELQDVVQAVEDGIP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 423 IDIAQIDFTGAWDTLGEITGESAPDELVTQLFSQFCLGK 461


>gi|221042034|dbj|BAH12694.1| unnamed protein product [Homo sapiens]
          Length = 514

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 172/461 (37%), Positives = 253/461 (54%), Gaps = 30/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 57  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 116

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 117 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 176

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 177 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 236

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 237 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 296

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R    +E ADLIL 
Sbjct: 297 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 356

Query: 305 LKEINSKKEISFPK-----------------NIDFIFIGTKSDLYSTYTEEYDHLI---- 343
           + + +     S                    +   + +  KSDL S         +    
Sbjct: 357 MLDASDLASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHL 416

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKD 399
             S  TGEGL+ L+  ++  L+           + +  RH +HL   +  L       + 
Sbjct: 417 LLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK---QS 473

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 474 KDLALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 514


>gi|88607072|ref|YP_505803.1| tRNA modification GTPase TrmE [Anaplasma phagocytophilum HZ]
 gi|123494246|sp|Q2GIJ8|MNME_ANAPZ RecName: Full=tRNA modification GTPase mnmE
 gi|88598135|gb|ABD43605.1| tRNA modification GTPase TrmE [Anaplasma phagocytophilum HZ]
          Length = 445

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/448 (37%), Positives = 260/448 (58%), Gaps = 16/448 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TIFA+ST    S +++IR+SGPS  +    +  K    PR A  R      GR++D
Sbjct: 4   RQTDTIFALSTAQGKSGVAVIRISGPSSMEALRLLGVKDDISPRVAHCRLLHDSKGRLID 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + +++ FP P SFTGED  E  VHG  AV+  + EEL     +R+A PGEFS RA+ NGK
Sbjct: 64  QAVVLYFPKPGSFTGEDVVELQVHGSRAVIRLLYEEL--QTFIRIAEPGEFSLRAYLNGK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL  AE +ADLI++ET+ Q R ++   +G+L   Y QW   L  I + +EA +DF E+ 
Sbjct: 122 IDLTRAEGIADLINAETDAQLRQALAQSTGKLEKQYDQWRSILLDILTDLEACIDFPEDV 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D          N+I  L   +  +++ G  GE +R+G ++VILG  NAGKS+LFN++A++
Sbjct: 182 DSSCVLGGIY-NNIEKLCAVLGQYLNDGHRGERLRSGVRVVILGPPNAGKSTLFNSIARR 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV++ PGTTRDVL + +D+ GY   + DTAGIRE+ D +E+EGIKR  +  E AD+ 
Sbjct: 241 NAAIVSEHPGTTRDVLEVAIDIGGYPYIVLDTAGIRESCDGIEQEGIKRAKMAAEEADIK 300

Query: 303 LLL-----KEINSKKEISFPKNIDFIFIGTKSDLYST-----YTEEYDHLISSFTGEGLE 352
           +++       +     I   ++   I + +K+D            +  HLIS     G+ 
Sbjct: 301 IVMYPYETTSMQGIDPICDLQDEKTILVLSKADNVDLPESKCIDGKEFHLISVHQDRGIG 360

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
           +L+  I+    + F +      + +RH  HL + ++ ++  S   K   ++I+AE+LR+A
Sbjct: 361 KLLTLIQEKSRDSFPQEGDVFITSQRHRSHLQKALQVVDAVS---KVMPIEIVAEHLRIA 417

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  LG++TG V  + +LD IFSKFCIGK
Sbjct: 418 AYELGRVTGAVSGDDILDDIFSKFCIGK 445


>gi|320170767|gb|EFW47666.1| tRNA modification GTPase TrmE [Capsaspora owczarzaki ATCC 30864]
          Length = 585

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 149/456 (32%), Positives = 259/456 (56%), Gaps = 20/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASL-RYFFGLDGR 59
            ++++I+A++T    + ++++RLSG +     E +     K   PR+A L R        
Sbjct: 132 QQRDSIYALATAPGRAGVAVVRLSGRAAGIAIERMTGSAQKSKTPRQAHLCRLVHPTTKE 191

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D  +++ FP P SFTGED AEFH+HGG +++  + E L+++P+ R+A+ GEF++RAF 
Sbjct: 192 HIDDAIVLWFPGPRSFTGEDVAEFHIHGGRSIIEALFEALSELPDTRMADAGEFTKRAFF 251

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGKIDL E E LADLI++ET  QR+ ++  ++G +S  + +W   +    + +E ++DF+
Sbjct: 252 NGKIDLTEVEGLADLINAETRAQRQQALRQLNGAMSRTFEEWRRTILKSMAHVEGNIDFA 311

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED++    +  ++ +  L+++I++ ++  + GE +R+G  + I+G  N GKSSL N +
Sbjct: 312 ETEDIEENVMQSAISAVQTLRHEIAASLNDSRRGERLRSGVSVAIVGAPNVGKSSLLNIM 371

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           +++  AIV+   GTTRD+L + LD+ GY + + DTAG+R++D+ +E+EGIKR        
Sbjct: 372 SQRPTAIVSATAGTTRDILEVPLDIGGYPLLLCDTAGMRDSDEEIEQEGIKRARARAHAC 431

Query: 300 DLILLLKEIN-----SKKEISFPKNIDFIFIGTKSD--------LYSTYTEEYDHLISSF 346
           DL L + + +         +   +    + I  K D        +           +S  
Sbjct: 432 DLRLCVFDASKLDSVDPSILQLVQPGMSLPIINKIDTVEASQLVIPPEILAAKPVFLSCK 491

Query: 347 TGEGLEELINKIKSILSNKFKKL--PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           +GEG+  L+ ++   L  + +      ++ +  RH   L   V +L+    +  D    I
Sbjct: 492 SGEGVSVLLERLTLELKQRCESETGETALITQWRHRTQLQTCVAHLDHFLEDLSDVA--I 549

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE+LR A  +LG+ITG VD+E++LD+IF  FCIGK
Sbjct: 550 AAEHLRQAVRALGQITGRVDIEEILDVIFRDFCIGK 585


>gi|221214581|ref|ZP_03587551.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD1]
 gi|221165471|gb|EED97947.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD1]
          Length = 464

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/466 (32%), Positives = 244/466 (52%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  ++  PR AS   F  
Sbjct: 2   LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPMIDALCG-QRLAPRHASYVPFLD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 61  AQGVPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDVGRAVGLRLAEPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D + ++R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVINLRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPE-EEIDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIART 299

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +        +      FP  +  + +  K+DL          +   
Sbjct: 300 WSEIERADVVLHLLDSRTGMTADDDAIAARFPAGVPVVRVLNKTDLTGVPASVAHPAAEG 359

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+ +
Sbjct: 360 DLTEVHLSAKRGDGIDLLRAELLRIAGWQAG-AEGVYLARERHLIALRAAQDHLARAAEH 418

Query: 397 EKD--CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +     LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|228474138|ref|ZP_04058875.1| tRNA modification GTPase TrmE [Staphylococcus hominis SK119]
 gi|228271833|gb|EEK13170.1| tRNA modification GTPase TrmE [Staphylococcus hominis SK119]
          Length = 459

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 150/459 (32%), Positives = 249/459 (54%), Gaps = 23/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           + +TI ++ST     AI I+RLSGP   ++ + + K KK      S    +G        
Sbjct: 2   DFDTITSISTPMGEGAIGIVRLSGPEAVEIGDKLYKGKKKLKDVPSHTINYGHIIDPETD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++RAF
Sbjct: 62  EVVEEVMISVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTHGARMAEPGEYTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D I S+T+   +++M  + G LS L  Q    +  I + +E ++D+
Sbjct: 121 LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKQQRQSILEILAQVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV++ +++ +L     +KN+I   +  G  G+I+R G   VI+G  N GKSS+ N 
Sbjct: 181 PEYDDVEDATTEFLLAQSKKIKNEIDQLLETGTQGKIMREGLSTVIVGKPNVGKSSMLNN 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   +  
Sbjct: 241 LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSE 300

Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           ADLIL +   N       +      KN D I I  K+DL      E    +         
Sbjct: 301 ADLILFVLNNNEPLTEEDRTLYEVIKNEDAIVIVNKTDLERRLDIEEVKTMIGDTPLIQT 360

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S    EG++EL  +I+ +      +    +  S+ RH+  L Q  + ++ A    E    
Sbjct: 361 SMLKQEGIDELELQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAEAGIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  +L      LG+I G    ++L++ +FS+FC+GK
Sbjct: 421 MDMVQIDLTRTWELLGEIIGESASDELINQLFSQFCLGK 459


>gi|58338215|ref|YP_194800.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus NCFM]
 gi|227902598|ref|ZP_04020403.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus ATCC 4796]
 gi|75357100|sp|Q5FHQ5|MNME_LACAC RecName: Full=tRNA modification GTPase mnmE
 gi|58255532|gb|AAV43769.1| thiophene and furan oxidation protein [Lactobacillus acidophilus
           NCFM]
 gi|227869687|gb|EEJ77108.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus ATCC 4796]
          Length = 461

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 141/459 (30%), Positives = 234/459 (50%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+R+SG    ++   + K      +  +    +G       
Sbjct: 6   TEFDTIAAISTPIGEGGISIVRMSGEDAIKIANEVFKGAD-LAQVPTHTIHYGHIIDPDT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+ +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L K    R+A+PGEF++RA
Sbjct: 65  GKTIDESMVTVLRAPKTFTCEDIVEINCHGGIVVTNHILQLLLK-HGARMADPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R++++  + G L         ++    + +E ++D
Sbjct: 124 FVNGRIDLTQAESVMDIVRAKTDKARQVAVSQLEGGLLHKIRTMRQEILDTLANVEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D    ++ ++ +    +   I   +   + G+I+RNG    I+G  N GKSSL N
Sbjct: 184 YPEY-DADTVTANQMADTAKSVIEKIDRLLKTAQEGKILRNGLATAIVGQPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  TDD VEK G++R+   +E
Sbjct: 243 YLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVERSKKALE 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------DHLI 343
            ADL+LLL + +       K  I+   +   I I  KSDL    T E             
Sbjct: 303 RADLVLLLIDASKELTAEDKSLINETDSKKRIIILNKSDLGQKITVEQMKKLTGSEVIST 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    + ++EL   I  +     +      + +++R    L +    LE      +    
Sbjct: 363 SILKEDNMDELEELINKLFFAGIENSNDQVMVTNQRQTSLLHKAKSELEDVIQAVDDGIP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 423 VDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|326319555|ref|YP_004237227.1| tRNA modification GTPase TrmE [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323376391|gb|ADX48660.1| tRNA modification GTPase TrmE [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 476

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 163/478 (34%), Positives = 242/478 (50%), Gaps = 41/478 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     + E +C +    PR+A+   F    G+ 
Sbjct: 2   LPRHTDPIAAIATAPGRGAVGIVRVSGRGVGPLVEALCGRTL-RPREATYLPFRDAAGQS 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA-------------KMPNLRL 107
           +D+GL + FP+P S+TGED  E   HGG  V+  +L                 ++P LRL
Sbjct: 61  IDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLQAASEPDRATGRPRLPGLRL 120

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEF+ RAF N KIDL +AE++ADLI + TE   R +   ++G  S    +  D L H
Sbjct: 121 ARPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLAGAFSDEIHRLRDALVH 180

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA LDF E E++      +    +  L+  ++  + + + G ++R G K+VI G 
Sbjct: 181 LRMLVEATLDFPE-EEIDFLRKADAHGQLAALQRTLAEVMGRTRQGALLREGIKVVIAGQ 239

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+RE+DD VE+ 
Sbjct: 240 PNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESDDEVERI 299

Query: 288 GIKRTFLEVENADLILLLKEIN---------SKKEIS------FPKNIDFIFIGTKSD-- 330
           GI+R + E+  AD +L L ++          +  EI+       P  +  + +  KSD  
Sbjct: 300 GIERAWQEIAAADAVLFLHDLTRAGQPDYEAADAEIAARLAGMAPAQVPVVDVWNKSDRA 359

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                             +S+ TGEGL+ L   +  I   +         +  RHL  L 
Sbjct: 360 EGSSGAAPDAPGRAAAVRLSARTGEGLDGLRRVLLDIAGWQ-SAPEGIYTARARHLEALQ 418

Query: 385 QTVRYL--EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +L    A L      LD++AE LRLA  +L  ITG    + LL +IFS FCIGK
Sbjct: 419 AVDAHLMEAAAQLESDGPALDLLAEELRLAQQALNAITGEFTSDDLLGVIFSSFCIGK 476


>gi|254251057|ref|ZP_04944375.1| hypothetical protein BDAG_00227 [Burkholderia dolosa AUO158]
 gi|124893666|gb|EAY67546.1| hypothetical protein BDAG_00227 [Burkholderia dolosa AUO158]
          Length = 495

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/466 (33%), Positives = 245/466 (52%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  ++  PR AS   F  
Sbjct: 33  LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCG-QRLAPRHASYVPFLD 91

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 92  AHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGE 151

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D + ++R  +
Sbjct: 152 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDHVINLRMLV 211

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 212 EATLDFPE-EEIDFLEAADARGKLAKIREQLTHVLGDARQGALLREGLSVVLAGQPNVGK 270

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RETDD VE+ GI RT
Sbjct: 271 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETDDEVERIGIART 330

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +        + +    FP  +  + +  K+DL          +   
Sbjct: 331 WSEIERADVVLHLLDSRTGMTADDERIAARFPAGVPVVRVLNKTDLTGVPACVEHPAAEG 390

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394
           +  D  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+  
Sbjct: 391 DLTDVHLSAKRGDGIDLLRAELLRIAGWQAG-AEGVYLARERHLIALRAAQAHLAQAADH 449

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 450 AEQRAQSLDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 495


>gi|332184417|gb|AEE26671.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella cf.
           novicida 3523]
          Length = 450

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 144/454 (31%), Positives = 243/454 (53%), Gaps = 21/454 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + K+TI A++T      I I+R+SG     + E + K+    PR A     +  D  I+D
Sbjct: 2   YTKDTIVAIATPQGNGGIGIVRISGIDALVIAEKLTKRHL-KPRYAIFSNIYN-DSEIID 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GEF+ RAF N K
Sbjct: 60  HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++EA +DF E E
Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPE-E 177

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++     +++   +  +   I    +  K G I+  G  ++++G  NAGKSSL NALA K
Sbjct: 178 EINFLEDQKIHTSLEEIYKTILDVKNSCKQGVILAEGITLILVGKPNAGKSSLLNALAGK 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR   +++ AD +
Sbjct: 238 ESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKIQEADQV 297

Query: 303 LLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEYDHL--ISSF 346
           L + +  +  ++ F              PKNID  ++  K DL     + +D+   IS+ 
Sbjct: 298 LFVTDDYTNSQVKFSDIKDIIPEFYDQIPKNIDITYVHNKIDLLKEVPQNHDNHIYISAE 357

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
              G++ L   I + +     +      + +RH+  ++    ++++A    +    +++A
Sbjct: 358 NNIGIDRLKEHILNKV-GYTNQNESIYTARERHVTAINNAFEHIKLAKQQLELGNGELLA 416

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E L +    L  ITG    + LL  IFS FCIGK
Sbjct: 417 EELLIVQECLNSITGEFSSDDLLGKIFSSFCIGK 450


>gi|148269793|ref|YP_001244253.1| tRNA modification GTPase TrmE [Thermotoga petrophila RKU-1]
 gi|205829183|sp|A5IKF4|MNME_THEP1 RecName: Full=tRNA modification GTPase mnmE
 gi|147735337|gb|ABQ46677.1| tRNA modification GTPase trmE [Thermotoga petrophila RKU-1]
          Length = 450

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 157/454 (34%), Positives = 252/454 (55%), Gaps = 24/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDKG 64
           +TI AV+T     AI+I+RLSGP  +++ +   + + +  PRKA   +    +G  +D+ 
Sbjct: 2   DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSEIVPRKAIHGWIH-ENGEDVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I + SP+S+TGED  E   HGG  VV  +L+ L      R+A PGEF++RAF NGK+D
Sbjct: 61  VVIFYKSPKSYTGEDMVEVMCHGGPLVVKKLLD-LFLKSGARMAEPGEFTKRAFLNGKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE++ DLI +++E   +LS+  + G L         +L  + + I  +LD+    D 
Sbjct: 120 LTSAEAVRDLIEAKSETSLKLSLRNLKGGLKDFVESLRRELIEVLAEIRVELDYP---DE 176

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              ++ EV+  +  +K  ++  + +   G ++  G+++VI+G  N GKS+L N L  +D 
Sbjct: 177 IETNTGEVVTRLERIKEKLTKELKKADAGILLNRGFRMVIVGKPNVGKSTLLNRLLNEDR 236

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIVTDIPGTTRDV++ ++ + G L +I DTAG+R ET+D+VE+ GI+RT  E+E AD++L
Sbjct: 237 AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVL 296

Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----------ISSFT 347
            + + +S      +K +   KN  ++ +  K D+     EE              IS+  
Sbjct: 297 FVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALK 356

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIA 406
           GEGLE+L   I       F++   S+ ++ R    L     +LE A  + K    +D+ +
Sbjct: 357 GEGLEKLEEAIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKEGMPVDMAS 416

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  A   L ++TG    E LLD IFS FC+GK
Sbjct: 417 IDLERALSLLDEVTGRSFREDLLDTIFSNFCVGK 450


>gi|161508218|ref|YP_001578189.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DPC 4571]
 gi|205415770|sp|A8YTQ7|MNME_LACH4 RecName: Full=tRNA modification GTPase mnmE
 gi|160349207|gb|ABX27881.1| Thiophene and furan oxidation protein [Lactobacillus helveticus DPC
           4571]
          Length = 461

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 139/459 (30%), Positives = 236/459 (51%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+R+SG    ++   + K      +  +    +G       
Sbjct: 6   TEFDTIAAISTPIGEGGISIVRMSGEDAVKIANEVFKGAD-LTKVPTHTIHYGHIVDPDT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RA
Sbjct: 65  DKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQ-LLLSHGARMADPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R++++  ++G L         ++    + +E ++D
Sbjct: 124 FVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILDTLANVEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D    ++K++ +    +   I   +   + G+I+RNG    I+G  N GKSSL N
Sbjct: 184 YPEY-DADTVTAKQMADTAKSVIKKIDRLLKTAQEGKILRNGLATAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  TDD VEK G++R+   ++
Sbjct: 243 YLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVERSKKALD 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY--------TEEYDHLI 343
            ADL+LLL + +       K  I   K+   I +  KSDL            T     L 
Sbjct: 303 RADLVLLLIDASQELTAEDKALIEETKDKKRIIVLNKSDLGQKITVDEMKKQTGSDVILT 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDCG 401
           S    + L++L   I  +     +      + +++R    L++  + L+      E    
Sbjct: 363 SILKEKNLDKLEELINKLFFAGIENSNDQVMVTNQRQTSLLTKAKKELQDVVQAVEDGIP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI   +   A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 423 IDIAQIDFTGAWDTLGEITGESAPDELVTQLFSQFCLGK 461


>gi|288819136|ref|YP_003433484.1| tRNA modification GTPase [Hydrogenobacter thermophilus TK-6]
 gi|288788536|dbj|BAI70283.1| tRNA modification GTPase [Hydrogenobacter thermophilus TK-6]
 gi|308752720|gb|ADO46203.1| tRNA modification GTPase TrmE [Hydrogenobacter thermophilus TK-6]
          Length = 450

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 163/453 (35%), Positives = 262/453 (57%), Gaps = 16/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGR 59
           M  ++E I A++T    SAI +IR+SG    +  +   + K +  PR A        DG+
Sbjct: 1   MVKQREPIIAIATPYGESAIGMIRISGLGVLEKVKKYVRTKGEIKPRYAHFFALLDEDGQ 60

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+G+LI + SP S+TGED  E  +HG   ++   LE L     +RLA PGEF++RAF 
Sbjct: 61  VLDEGVLIYYKSPASYTGEDMIEMCLHGNPLILKRALE-LFLKEGIRLAEPGEFTKRAFL 119

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+D+ +AE++ADLI+++T++ R++++  + GELS       +KL  + +++EAD++FS
Sbjct: 120 NGKLDMTQAEAVADLINAKTDLARKVAIRQLQGELSKYVNSLREKLIQLLAYVEADIEFS 179

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +D+   S +E+L  +  ++N I + +S  K GE++R G  + I+G  N GKSSLFNAL
Sbjct: 180 E-QDIPTISREEILQVLKEVQNSIETLMSTVKAGELLRKGINLAIVGKPNVGKSSLFNAL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVT++PGTTRD L+ +L +EG  + + DTAGIRET+D+VE  G+KR+   + +A
Sbjct: 239 LGRERAIVTEVPGTTRDFLSEELHMEGVPINLIDTAGIRETEDVVESIGVKRSIDSINSA 298

Query: 300 DLILLLKEINSKKEIS------FPKNIDFIFIGTKSDLYSTYTEEYDHLI----SSFTGE 349
           D++L + + +   E          K  D I +  K DL    +           S+  G+
Sbjct: 299 DMVLFVVDASKPLEKDDWDVYNLVKQRDHIKVLNKVDLGLDPSIAKIFPDGVRVSAKMGD 358

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAE 407
           G+++L   +   L   F      +    RH   L +++  +E    SL ++D   +I+A 
Sbjct: 359 GMQDLKKVMLEKL-GVFGYEGMKVYVSARHAQLLKKSLEIIEPLIHSLEKQDISPEILAL 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR A V L ++ G +  E +L  IFS+FCIGK
Sbjct: 418 ELREALVYLDEMVGAITTEDVLSAIFSRFCIGK 450


>gi|222530701|ref|YP_002574583.1| tRNA modification GTPase TrmE [Caldicellulosiruptor bescii DSM
           6725]
 gi|222457548|gb|ACM61810.1| tRNA modification GTPase TrmE [Caldicellulosiruptor bescii DSM
           6725]
          Length = 455

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 166/457 (36%), Positives = 248/457 (54%), Gaps = 23/457 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------PFPRKASLRYFFGLD 57
           E +TI A+ST      I I+R+SG + F + + + + +K         R A+L   +  D
Sbjct: 2   EFDTIVAISTPIGTGGIGIVRISGKNAFDIAQKLIRSRKYKTVKDIPTRYAALVDVYDGD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +LI F SP S+TGED  E   HGG+ V+  ILE   K    R A PGEF++RA
Sbjct: 62  -EFVDEAILIKFKSPNSYTGEDVVEIQSHGGMVVLKRILEAAIKS-GARHAMPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+S+T + ++ + + + G LS    +    L ++ + IEA +D
Sbjct: 120 FLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNMVASIEASID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE E V   S  E+L  I      I   I   + G+ I++G   VI+G  N GKSSL N
Sbjct: 180 FSEHE-VDEVSKDEILFTIDAALAKIEKLIKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K++ AIVTDIPGTTRDV+   LD+EG  + ++DTAG+R+T+DIVEK G+K+T   +E
Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGVPIILADTAGVRKTEDIVEKIGVKKTLESIE 298

Query: 298 NADLILLLKEINSKKEISFP-----KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
            ADL+L + E +   +         KN  FI I  K D     +++    I    G  + 
Sbjct: 299 RADLVLFMVESSGILQEDLEIFEAIKNKRFIVIVNKIDKEVKVSQDDIKRIFGKEGIFIS 358

Query: 353 -------ELINKIK--SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
                  EL+ K     +L+   +     + ++ RH   L +   +L  A  N     LD
Sbjct: 359 VERDKNLELVEKAIANEVLNQNIETHDSVLITNLRHKELLLKAKEFLVSAKENMYAVPLD 418

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I++ +++ A  SL +ITG    E ++D IFS FCIGK
Sbjct: 419 ILSIDIKNALDSLYQITGKNVTEDMVDRIFSMFCIGK 455


>gi|222475664|ref|YP_002564081.1| thiophene and furan oxidation protein (thdF) [Anaplasma marginale
           str. Florida]
 gi|255003656|ref|ZP_05278620.1| tRNA modification GTPase TrmE [Anaplasma marginale str. Puerto
           Rico]
 gi|222419802|gb|ACM49825.1| thiophene and furan oxidation protein (thdF) [Anaplasma marginale
           str. Florida]
          Length = 443

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 168/446 (37%), Positives = 253/446 (56%), Gaps = 18/446 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+ST    S +++IR+SG +  +  + +  K+   PR A+ +  +    + +D+ +
Sbjct: 5   DTIFALSTPMGKSGVAVIRISGHNALKSMQLLGVKEPVRPRVATCKTLYDKKRQPIDQAV 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED  E  VHG +AV+  + EEL      R+A PGEFS RAF NGKIDL
Sbjct: 65  VLYFPGPGSFTGEDVVELQVHGSLAVIRLLFEEL--QTVFRIAEPGEFSLRAFLNGKIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE +ADL++SETE Q R +    SG L  LY +W   L  I S +EA +DF +  DV 
Sbjct: 123 TRAEGIADLVNSETEAQLRQAFAQSSGFLERLYEEWRSSLVDILSDLEAYIDFPD--DVS 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
               + V + +  L N +  H+  G  GE +R+G ++ ILG  N GKS+LFN LA++D+A
Sbjct: 181 PQILRSVHDRVKELHNSLERHLDDGHRGERLRHGMRVAILGKPNVGKSTLFNHLARRDMA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++ PGTTRDVL   +D+ GY   + DTAGIRE+ D VE+EGI R   E   AD+ ++L
Sbjct: 241 IVSEYPGTTRDVLEAHVDIGGYPFIVVDTAGIRESTDFVEREGIMRAKSEAATADIRIML 300

Query: 306 KEINSK------KEISFPKNIDFIFIGTKSDLYST-----YTEEYDHLISSFTGEGLEEL 354
              +        + I    +   I++ +K+D            +  +L+S  T  G++ L
Sbjct: 301 FPHSEAGNLGVHEAIEGGDDGKTIYVLSKADSAKEGETRIIEGKQFYLVSVHTNLGVDSL 360

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
           ++ +K    + F K    + + +RH  HL    + +   S    +   +I+AE LRLA+ 
Sbjct: 361 LSALKERAIDGFPKSGDVLITSQRHRGHLQSAAKVI---SDITDEMPAEIVAEYLRLATK 417

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            +GK+TG V  + +LD IF +FCIGK
Sbjct: 418 EIGKVTGAVYGDDILDNIFKRFCIGK 443


>gi|282902629|ref|ZP_06310522.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           C160]
 gi|282597088|gb|EFC02047.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           C160]
          Length = 459

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 149/460 (32%), Positives = 240/460 (52%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI ++ST     AI I+RLSGP   ++ + + K K            +   G I+D   
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPPHTINY---GHIIDPES 60

Query: 66  LIV--------FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             V          +P++FT ED  E + HGGI  +N +LE L      R+A PGEF++RA
Sbjct: 61  KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D
Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVEK G++R+   + 
Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299

Query: 298 NADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYT---------EEYDHL 342
            ADLIL +   N              KN D I I  K DL              +     
Sbjct: 300 QADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQ 359

Query: 343 ISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
            S    EG++EL  +I+ +      +    +  S+ RH+  L Q  + ++ A    E   
Sbjct: 360 TSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGV 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 420 PMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459


>gi|310659884|ref|YP_003937605.1| GTPase [Clostridium sticklandii DSM 519]
 gi|308826662|emb|CBH22700.1| GTPase [Clostridium sticklandii]
          Length = 459

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 157/459 (34%), Positives = 245/459 (53%), Gaps = 26/459 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLDG 58
            +TI AV+T    + I I+RLSGP    +   I K  K         RK    + +  D 
Sbjct: 4   DDTIAAVATAPGEAGIGIVRLSGPKALDIANKIFKPIKGNTDLSMQVRKLVYGHVYDQD- 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ L+     P +FT ED  E + HGG   V  ILE + +    RLA+ GEF++RAF
Sbjct: 63  KVIDEVLISYMKKPHTFTREDVVEINCHGGYISVRKILEAVIR-NGARLADRGEFTKRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I+++T     ++ + + G LS+   Q  DKLT   + I   +DF
Sbjct: 122 LNGRIDLSQAEAIIDIINAKTNASFDIAQKHLEGNLSASIKQIRDKLTMDLAKITVAIDF 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E ED    + +E+  D+  +   I   I+  + G+I+R+G K VI+G  N GKSSL NA
Sbjct: 182 PE-EDEPEVTYEELSVDLREVMTSIKGLIASFETGKILRDGLKTVIVGKPNVGKSSLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           + K+  AIVT+I GTTRD++   +++ G  +KI DTAGIRETDD+VEK G++++    E+
Sbjct: 241 ILKESRAIVTEIEGTTRDIIEEYVNIGGIPLKIVDTAGIRETDDLVEKIGVQKSKESFES 300

Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           ADL++++ + +       +  +S   +   I +  K+DL S  T++  H           
Sbjct: 301 ADLVIMMLDSSRHLSNQDQDILSLLGDKKAIILVNKTDLPSMVTDDEIHNYAKGKPIIRI 360

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CG 401
           S+   +G++ L  +I+++ L    K     + ++ RH   L +       A     D   
Sbjct: 361 SALEKKGIDLLEKEIENMVLEGSLKTQNDIMVTNARHKMALERAFEACSDALTALADNIP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LDI   + + A   LG ITG    E LLD IF +FCIGK
Sbjct: 421 LDIAETDFKNAWNELGHITGDTVSEDLLDTIFREFCIGK 459


>gi|254282403|ref|ZP_04957371.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR51-B]
 gi|219678606|gb|EED34955.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR51-B]
          Length = 450

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 157/448 (35%), Positives = 232/448 (51%), Gaps = 15/448 (3%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           +K+TI A++T      + IIRLSGP    + E IC      PR A  R F       +D 
Sbjct: 7   DKDTIAAIATPPGRGGVGIIRLSGPRALPIAEAICGGPL-APRTAHFRSFSDQQNDAIDN 65

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  + + +LE   ++   R+A PGEFS RAF N KI
Sbjct: 66  GIALSFPAPHSFTGEDVVELQGHGGPVIQSLLLERCLEL-GARMARPGEFSERAFLNDKI 124

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE++ADLI ++T    + +   +SG  S         +  +R ++EA +DF + ED
Sbjct: 125 DLVQAEAIADLIDAQTRSAAKQAKASLSGRFSDQLTALAGTILDLRKYVEAAIDFPD-ED 183

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V   +  L N+    ++  + G I+R G ++V+ G  NAGKSSL N LA   
Sbjct: 184 IDFLAEGKVAGQLTALANNAKELLAGARRGAIVRAGAQVVLAGKPNAGKSSLMNRLAGDA 243

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIVTD+PGTTRD+L   ++L G  + ++DTAG+R+++D VE+EG+KR    +E AD+IL
Sbjct: 244 VAIVTDVPGTTRDLLRQPIELGGVALHLTDTAGLRDSEDTVEQEGVKRARSAIEMADVIL 303

Query: 304 LLKEINSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLEE 353
            + +               +   + +  K DL        +        IS+ TG G+  
Sbjct: 304 HVIDDTQTDSAPSNSTETIDGKTLLVYNKIDLSGRKPGHIEGESTAAVAISTKTGAGMAS 363

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLA 412
               +  IL            + +RH+  L      L  A          +++AE+LRL 
Sbjct: 364 FEEVLLGIL-GVSTDTEDPFSARERHIRILETVNNSLATALEQFLLSGAGELLAEDLRLT 422

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LG+ITG V  E LL  IFS FCIGK
Sbjct: 423 HDQLGEITGRVTTEDLLGEIFSNFCIGK 450


>gi|42519903|ref|NP_965833.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii NCC 533]
 gi|81832151|sp|Q74H94|MNME_LACJO RecName: Full=tRNA modification GTPase mnmE
 gi|41584193|gb|AAS09799.1| probable tRNA modification GTPase TrmE [Lactobacillus johnsonii NCC
           533]
          Length = 461

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 240/459 (52%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            + +TI A+ST      ISI+RLSG     +   + K      +  S    +G       
Sbjct: 6   TQFDTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGAD-LTQVPSHTIHYGHIVDPKT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ ++ V  +P++FT ED  E + HGG+ V N IL+ L      R+A+PGEF++RA
Sbjct: 65  KDVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R+++M  ++G L         +L    +  E ++D
Sbjct: 124 FMNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIRTMRQELLDTMAHEEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D+ + +S+E+      +   I   +   + G+IIRNG    I+G  N GKSSL N
Sbjct: 184 YPEY-DMDDLTSQEMKKKAEEVSKQIDQLLKTAQEGKIIRNGLATAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTDI GTTRD L   + ++G  +K+ DTAGI  T+D VEK G++R+   + 
Sbjct: 243 YLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVERSKKAIA 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLI 343
            ADL+LLL + +       K  ++   N   I I  K DL +  ++E           + 
Sbjct: 303 EADLVLLLLDASQDLTDEDKNLLNLTANKKRIIILNKQDLGTKISQEMIREITDNPIIVT 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CG 401
           S    E +  L N I+ +  +  +      + +++R    L++  + LE       D   
Sbjct: 363 SILKQENMAALENAIEQLFFSGIENSQNQILVTNQRQAGLLAKAKQSLEDVVNGIDDAMP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD++  +L+ A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 423 LDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|312794739|ref|YP_004027662.1| tRNA modification gtpase trme [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181879|gb|ADQ42049.1| tRNA modification GTPase TrmE [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 455

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/457 (35%), Positives = 245/457 (53%), Gaps = 23/457 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------PFPRKASLRYFFGLD 57
           E +TI A+ST      I I+R+SG   F + E + + +K         R A+L   +  D
Sbjct: 2   EFDTIAAISTPIGTGGIGIVRISGKDAFDIAEKLIRSRKYKSIKDIPARYAALVDVYDGD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +LI F SP S+TGED  E   HGG+ V+  ILE   K    R A PGEF++RA
Sbjct: 62  -EFVDEAILIKFKSPHSYTGEDIVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+S+T + ++ + + + G LS    +    L ++ + IEA +D
Sbjct: 120 FLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNLVASIEASID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE E V      E+L+ +      I   +   + G+ I++G   VI+G  N GKSSL N
Sbjct: 180 FSEHE-VDEVPHTEILSTVDAALQKIDKLLKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K++ AIVTDIPGTTRDV+   LD+EG  + ++DTAG+R+T+D+VEK G+K+T   +E
Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAGVRKTEDVVEKIGVKKTLESIE 298

Query: 298 NADLILLLKEINSKKEISFP-----KNIDFIFIGTKSDLYSTYTEEYD--------HLIS 344
            ADL+L + E +   +         K+  FI +  K D     + E            IS
Sbjct: 299 RADLVLFMIESSGILQEDLEIFETIKDKRFIVLVNKIDKEVKVSHEDIKRIFGKEGIFIS 358

Query: 345 SFTGEGLEELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
               + LE +   I   +L    +     + ++ RH   L +   +L  A  N     LD
Sbjct: 359 VEHDKNLELVEKAIANEVLDKDIEAFDSVLITNLRHKELLLKAKEFLLSAKENLDCVPLD 418

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I++ +++ A  SL +ITG    E ++D IFS FCIGK
Sbjct: 419 ILSIDIKNALESLYQITGKNVTEDMVDRIFSMFCIGK 455


>gi|312144699|ref|YP_003996145.1| tRNA modification GTPase TrmE [Halanaerobium sp. 'sapolanicus']
 gi|311905350|gb|ADQ15791.1| tRNA modification GTPase TrmE [Halanaerobium sp. 'sapolanicus']
          Length = 464

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/461 (33%), Positives = 247/461 (53%), Gaps = 27/461 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-------KKPFPRKASLRYFFGL- 56
           ++TI A++T         IR+SGP  +++ + I +        K      A   + +   
Sbjct: 6   EDTIAAIATPFGTGGTGKIRISGPEAYEIGDKIFRSVQEGKKIKDAETYTAHYGFIYDPV 65

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           + + +D+ + I+   P SFTGE+  EF  HGG+  +  +LE L      RLA PGEFS+R
Sbjct: 66  EEKKIDEVVAIMMRKPRSFTGENVLEFDCHGGMTPLRAVLE-LVLASGARLAEPGEFSQR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ D+I+S+TE    +++E +SG+LS    +  +    + + +EA +
Sbjct: 125 AFLNGRIDLAQAEAIIDIINSKTEKSLDIAVEQLSGKLSQRVDEIKEIAVEVLAHLEAAI 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E+E ++ FS +++ +   ++K +I   +   + G+I + G K VI+G  N GKSSL 
Sbjct: 185 DYPEDE-IEGFSPEKLDDKFNYIKEEIEKLLLSSRQGKIYKEGLKTVIVGKPNVGKSSLL 243

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N   ++  AIVTDIPGTTRDV+   ++L+G  +KI DTAGIRET D VEK G++RT    
Sbjct: 244 NYFLEEKRAIVTDIPGTTRDVIEEYVNLKGIPLKIIDTAGIRETADKVEKIGVERTRKSA 303

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH--------- 341
           E ADL+L + +I+        +     K+   I I  K+DL +    +            
Sbjct: 304 EKADLVLFMLDISQGLTEEDLQIYKLIKDKPVIVIVNKTDLPAQEDRDKIEQEFKEHNLL 363

Query: 342 LISSFTGEGLEELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
            IS    +GLEEL  KI   IL  +       I +  RH   L +  + +E   ++ E  
Sbjct: 364 WISLLEEKGLEELRQKILNEILDEELSGDDNVIITKSRHKNALLKAKKAVERVIVSRETS 423

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D +  +L+    +LG+ITG    + ++D IFS FC+GK
Sbjct: 424 MPYDFLTIDLKDCLNALGEITGETVADDIIDRIFSDFCLGK 464


>gi|307151569|ref|YP_003886953.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7822]
 gi|306981797|gb|ADN13678.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7822]
          Length = 458

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/455 (33%), Positives = 240/455 (52%), Gaps = 23/455 (5%)

Query: 6   ETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYF-FGLDGR 59
           ETI A++T       +I I+RLSG     +   +     K+     +    Y      G+
Sbjct: 7   ETIAAIATAIVPQQGSIGIVRLSGTLALAIARTVFYAPGKQAWETHRILYGYIRHPQSGQ 66

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ RAF 
Sbjct: 67  LIDEALLLLMLAPRSYTKEDVIEFHCHGGIIPVQQVLQ-LCLENGARLAQPGEFTLRAFL 125

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AES+A+L++S++    ++++ G+ G+L+    Q       I + +EA +DF 
Sbjct: 126 NGRLDLTQAESVAELVNSQSVQASQIALAGLQGKLAHPIRQLRSNCLDILAEVEARIDFE 185

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  D+   +  E+   +  +  +++  ++    GE++R+G K+ I+G  N GKSSL NA 
Sbjct: 186 E--DLPPLNEDEIKQHLAAVLIEVNQILATADRGELLRSGLKVAIVGRPNVGKSSLLNAW 243

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIRETDD VEK G++R+    E A
Sbjct: 244 SRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETDDRVEKIGVERSRHAAEAA 303

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF------T 347
           DLILL  +         ++     K+   I +  K+DL    +  Y   I+S        
Sbjct: 304 DLILLTIDAQTGWTPEDEQIYQQVKHRPLILVINKTDLQEAKSVNYPSDITSVVETVAAK 363

Query: 348 GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDII 405
            EG+++L   I + +           I  ++R    L+Q    L+           LD  
Sbjct: 364 NEGIDQLEKIILNSVQSGHLTVTNLEIAINQRQAAALTQASLSLQQVQETINNQLPLDFW 423

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +LR A  +LG+ITG    E +LD IFS+FC+GK
Sbjct: 424 TIDLRSAIQALGEITGEEVTESVLDRIFSRFCLGK 458


>gi|295133679|ref|YP_003584355.1| tRNA modification GTPase TrmE [Zunongwangia profunda SM-A87]
 gi|294981694|gb|ADF52159.1| tRNA modification GTPase TrmE [Zunongwangia profunda SM-A87]
          Length = 480

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 150/479 (31%), Positives = 247/479 (51%), Gaps = 45/479 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG--LDGRI 60
            +TI A++T +   AI++IR+SGP    +   + K   KK    + +     G  +DG+ 
Sbjct: 4   NDTIVALATPSGAGAIAVIRVSGPEAISIVAPLFKAKSKKKLEEQPTHTLHLGNIVDGQR 63

Query: 61  -LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+ L+ VF +P+S+TGE++ E   HG   +   I++ L +    R A  GEF+ RAF 
Sbjct: 64  NLDEVLISVFRAPKSYTGEETIEISCHGSPYIQQEIIQLLVRS-GCRSAEAGEFTLRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N K+DL +AE++ADLISSE     +++M+ M G  S+   +  ++L +  S IE +LDF+
Sbjct: 123 NAKMDLSQAEAVADLISSENAASHQMAMQQMRGGFSNEIQRLREELLNFASLIELELDFA 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV+  +  +  N +  ++  +   I     G +++NG  + I+G  N GKS+L NAL
Sbjct: 183 E-EDVEFANRDQFRNLVARIQKVLKRLIDSFATGNVLKNGIPVAIVGEPNVGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV++I GTTRDV+  +L + G   +  DTAGIRET D+VE  GIK+TF ++  A
Sbjct: 242 LNEERAIVSEIAGTTRDVIEDELAIGGVGFRFIDTAGIRETKDVVESIGIKKTFEKIGQA 301

Query: 300 DLILLLKEINSKKEISFPKN------------------------------IDFIFIGTKS 329
            +++ L + +   +I F +                                  + I  K 
Sbjct: 302 QVVIYLFDTSRLSKIEFAEGSVAKDQLQGNETSLNMIQVEIEKIKNKYPQKPLVIIANKI 361

Query: 330 DLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           D  +    E         HL+S+ TG G+EEL  K+ + ++    +   +I ++ RH   
Sbjct: 362 DQLTEEQVEILTSRIPDLHLLSAKTGLGVEELKEKLLNFVNTGALRNNNTIVTNSRHYNA 421

Query: 383 LSQTVRYLEMASLNEK-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L + +  +         +   D++A ++R A    G+ITG +  + LL  IF+ FCIGK
Sbjct: 422 LLKALEEINKVEDGLNMELSGDLLAIDIRQALHHFGEITGEITNDDLLGNIFANFCIGK 480


>gi|190171350|gb|ACE63745.1| ThdF [Cronobacter turicensis]
          Length = 439

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 147/442 (33%), Positives = 232/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATHPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                 P  +    +  K+D+       S         +S+ T +G++
Sbjct: 299 TTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGLSEVNGHSLIRLSARTSDGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L N +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|160901486|ref|YP_001567068.1| tRNA modification GTPase TrmE [Delftia acidovorans SPH-1]
 gi|160367070|gb|ABX38683.1| tRNA modification GTPase TrmE [Delftia acidovorans SPH-1]
          Length = 473

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/475 (34%), Positives = 236/475 (49%), Gaps = 38/475 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     +   +C +    PR+A+   F    G  
Sbjct: 2   LPRHNDPIAAIATAPGRGAVGIVRVSGKGVAPLVRALCGR-DLKPREATYLPFRDAQGGP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------------PNLRLA 108
           +D GL + FP+P S+TGED  E   HGG  V+  +L    +             P LRLA
Sbjct: 61  IDHGLALFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQDPREGHRSVLPGLRLA 120

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
            PGEF+ RAF N KIDL +AE++ADLI + TE   R +   +SG  S       D L H+
Sbjct: 121 QPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSEEIHGLRDALVHL 180

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           R  +EA LDF E E++      +    +  L+  +   +S+   G ++R G K+VI G  
Sbjct: 181 RMLVEATLDFPE-EEIDFLQKADASGQLARLRGKLDQVLSRAHQGALLREGIKVVIAGQP 239

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+RE+ D VE+ G
Sbjct: 240 NAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESSDEVERIG 299

Query: 289 IKRTFLEVENADLILLLKEINSKKE---------------ISFPKNIDFIFIGTKSDLYS 333
           I R + E+  AD +L L ++    E                  P+ +  I +  K+D   
Sbjct: 300 IARAWDEIAAADAVLFLHDLTRMGEHDYLAADAAIAETLAQKLPRQVPVIDVWNKTDRAE 359

Query: 334 TYT------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
                     E    +S+ TG+GL+ L  ++  +   +         +  RH+  L    
Sbjct: 360 PARMQEHGGREGSVALSARTGDGLDALRRRLLDVAGWQ-SAPEGLYLARARHVEALQAVA 418

Query: 388 RYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L+ A L        LD++AE LRLA VSL  ITG    + LL +IFS FCIGK
Sbjct: 419 AHLQEAELQLAAQAAHLDLLAEELRLAQVSLNSITGEFSSDDLLGVIFSSFCIGK 473


>gi|254428001|ref|ZP_05041708.1| tRNA modification GTPase TrmE [Alcanivorax sp. DG881]
 gi|196194170|gb|EDX89129.1| tRNA modification GTPase TrmE [Alcanivorax sp. DG881]
          Length = 456

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/457 (33%), Positives = 241/457 (52%), Gaps = 21/457 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
               +TI A++T      + ++RLSGP    +   +  ++   PR A  R F    G +L
Sbjct: 3   TSSPDTIVAIATAPGRGGVGVVRLSGPQALSIASLVVGEQSLSPRVAHFRRFRDQAGEVL 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+GL+I FP+P SFTGED  E   HGG  +++ ++           A  GEFS+RAF N 
Sbjct: 63  DEGLVITFPAPHSFTGEDVVELQGHGGPVILDMLVAACIAAGAR-QARAGEFSQRAFLND 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ADLI + T    R ++  + G  S    Q ++ L  +R ++EA +DF E 
Sbjct: 122 KMDLTQAEAIADLIDAGTSASARAALHSLQGVFSDEVNQLVEALIGLRIYVEAAIDFPE- 180

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E++   S  +V +D+  ++      + +   G ++R G  +VI G  NAGKSSL NALA 
Sbjct: 181 EEIDFLSDGKVASDLTAVRRQCLRVLDEANQGRLVREGMTLVIAGKPNAGKSSLMNALAG 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            D AIVTDI GTTRDVL   + L+G  + + DTAG+R++ D+VE+EGI+R + E+  AD 
Sbjct: 241 FDAAIVTDIAGTTRDVLRESIQLDGMPLNLIDTAGLRDSADVVEQEGIRRAYAEMRKADR 300

Query: 302 ILLLKEINSKKEI------SFPKNI--------DFIFIGTKSD---LYSTYTEEYDHLIS 344
           +L++ +    +          P++             +  K+D   L +   E+   +IS
Sbjct: 301 LLVMVDSRDSEGDINDIHSLLPQSQQQLENLELPVTVVLNKADLSGLPAGQREDGAFVIS 360

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLD 403
           + +G+GLE L   +K     +  +      + +RH+  L Q +  L+            +
Sbjct: 361 AASGDGLEALRRHLKDAAGYQ-GEGQSRFSARRRHITALEQALAALDSGERQLHGHAAGE 419

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+LR A  +L +ITG    + LL  IFS FCIGK
Sbjct: 420 LLAEDLRAAQKALEEITGTFTADDLLGRIFSSFCIGK 456


>gi|269958310|ref|YP_003328097.1| tRNA modification GTPase TrmE [Anaplasma centrale str. Israel]
 gi|269848139|gb|ACZ48783.1| tRNA modification GTPase TrmE [Anaplasma centrale str. Israel]
          Length = 443

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/446 (37%), Positives = 254/446 (56%), Gaps = 18/446 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+ST    S +++IR+SG +  +  + +  K+   PR A+ +  +    + +D+ +
Sbjct: 5   DTIFALSTPMGKSGVAVIRISGHNALKSMQLLGVKEPVRPRVATCKTLYDKKRQPIDQAV 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED  E  VHG +AV+  + EEL      R+A PGEFS RAF NGKIDL
Sbjct: 65  VLYFPGPGSFTGEDVVELQVHGSLAVIRLLFEEL--QTVFRIAEPGEFSLRAFLNGKIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE +ADL++SETE Q R +    SG L  LY +W   L  I S +EA +DF +  DV 
Sbjct: 123 TRAEGIADLVNSETEAQLRQAFAQSSGFLERLYEEWRSSLVDILSDLEAYIDFPD--DVS 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
               + V + +  L N +  H+  G  GE +R+G ++ ILG  N GKS+LFN LA++D+A
Sbjct: 181 PQILRSVHDRVKELHNSLERHLDDGHRGERLRHGMRVAILGKPNVGKSTLFNHLARRDMA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++ PGTTRDVL   +D+ GY   I DTAGIRE+ D VE+EGI R   E   AD+ ++L
Sbjct: 241 IVSEYPGTTRDVLEAHVDIGGYPFIIVDTAGIRESTDFVEREGIMRAKSEAATADIRIML 300

Query: 306 KE------INSKKEISFPKNIDFIFIGTKSDLYST-----YTEEYDHLISSFTGEGLEEL 354
                   + + + I    +   I++ +K+D            +  +L+S  T  G++ L
Sbjct: 301 FPHSEADNLGAHEAIEGGDDGKTIYVLSKADNAKEGETRIIEGKQFYLVSVHTNLGVDSL 360

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
           ++ +K    + F K    + + +RH  HL    + +   S    +   +I+AE LRLA+ 
Sbjct: 361 LSALKERAIDGFPKSGDVLITSQRHRGHLQSAAKVI---SDITDEMPAEIVAEYLRLATK 417

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            +GK+TG V  + +LD IF +FCIGK
Sbjct: 418 EIGKVTGAVYGDDILDNIFKRFCIGK 443


>gi|49487489|ref|YP_044710.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|73919890|sp|Q6G5W4|MNME_STAAS RecName: Full=tRNA modification GTPase mnmE
 gi|49245932|emb|CAG44413.1| probable tRNA modification GTPase [Staphylococcus aureus subsp.
           aureus MSSA476]
          Length = 459

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 150/460 (32%), Positives = 241/460 (52%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI ++ST     AI I+RLSGP   ++ + + K K       S    +   G I+D   
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINY---GHIIDPES 60

Query: 66  LIV--------FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             V          +P++FT ED  E + HGGI  +N +LE L      R+A PGEF++RA
Sbjct: 61  KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D
Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVEK G++R+   + 
Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299

Query: 298 NADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYT---------EEYDHL 342
            ADLIL +   N              KN D I I  K DL              +     
Sbjct: 300 QADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQ 359

Query: 343 ISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
            S    EG++EL  +I+ +      +    +  S+ RH+  L Q  + ++ A    E   
Sbjct: 360 TSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGV 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 420 PMDMVQIDLTRIWEILGEIIGETASDELIDQLFSQFCLGK 459


>gi|314935198|ref|ZP_07842551.1| tRNA modification GTPase TrmE [Staphylococcus hominis subsp.
           hominis C80]
 gi|313656533|gb|EFS20272.1| tRNA modification GTPase TrmE [Staphylococcus hominis subsp.
           hominis C80]
          Length = 459

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 152/462 (32%), Positives = 250/462 (54%), Gaps = 25/462 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           MN   +TI ++ST     AI I+RLSGP   ++ + + K KK      S    +G     
Sbjct: 1   MN--FDTITSISTPMGEGAIGIVRLSGPEAVEIGDKLYKGKKKLKDVPSHTINYGHIIDP 58

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ++++ ++ V  +P++FT ED  E + HGGI  +N ILE L      R+A PGE+++
Sbjct: 59  ETDEVVEEVMISVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTHGARMAEPGEYTK 117

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D I S+T+   +++M  + G LS L  Q    +  I + +E +
Sbjct: 118 RAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKQQRQSILEILAQVEVN 177

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV++ +++ +L     +KN+I   +  G  G+I+R G   VI+G  N GKSS+
Sbjct: 178 IDYPEYDDVEDATTEFLLAQSKKIKNEIDQLLETGTQGKIMREGLSTVIVGKPNVGKSSM 237

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIR+T+DIVEK G++R+   
Sbjct: 238 LNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKA 297

Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------ 343
           +  ADLIL +   N       +      KN D I I  K+DL      E    +      
Sbjct: 298 LSEADLILFVLNNNEPLTEEDRTLYEVIKNEDAIVIVNKTDLERRLDIEEVKTMIGDTPL 357

Query: 344 ---SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEK 398
              S    EG++EL  +I+ +      +    +  S+ RH+  L Q  + ++ A    E 
Sbjct: 358 IQTSMLKQEGVDELELQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAEA 417

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D++  +L      LG+I G    ++L++ +FS+FC+GK
Sbjct: 418 GIPMDMVQIDLTRTWELLGEIIGESASDELINQLFSQFCLGK 459


>gi|254000528|ref|YP_003052591.1| tRNA modification GTPase TrmE [Methylovorus sp. SIP3-4]
 gi|253987207|gb|ACT52064.1| tRNA modification GTPase TrmE [Methylovorus sp. SIP3-4]
          Length = 446

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 159/448 (35%), Positives = 244/448 (54%), Gaps = 19/448 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      I ++R+SGP+  Q+   +     P PR A+   F   DG+++D G+
Sbjct: 5   DTIAAIATAPGSGGIGVVRISGPASAQIAAAVLGHCPP-PRHAAYLPFKEADGQLIDSGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I +  P S+TGED  E   HGG A++  +          R A PGEF+RRAF N K+DL
Sbjct: 64  AIFYAGPHSYTGEDVLELQAHGGPALMQLL-LLRCLQLGARQAEPGEFTRRAFLNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++AD+I++ T    R ++  +SGE S      ++ L ++R ++EA LDF E ED+ 
Sbjct: 123 AQAEAVADVINAATAEAARSAVRSLSGEFSRYIQDLLESLINLRMYVEACLDFPE-EDID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S   V   +  + + +       + G ++R G ++V++G  N GKSSL N LA ++VA
Sbjct: 182 FISQGRVAEKLQNIADALELVFKGARQGNLLREGIQVVLVGQPNVGKSSLMNQLAGEEVA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT I GTTRD +   + +EG  + + DTAG+RET+D VEK+GI RT+  +ENA+  LLL
Sbjct: 242 IVTPIAGTTRDTIKNVVQIEGVPLHLIDTAGLRETEDEVEKQGIARTWRALENANAALLL 301

Query: 306 KEI-----NSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLE 352
            +       ++K I    P N+  I++  K DL+S    + +H       IS+  G GL+
Sbjct: 302 VDAAHGITETEKSILERLPANLPKIWVHNKIDLHSEQPRQREHEGELHLYISAKLGLGLD 361

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            L   +  I   +         +  RHL  L     +L+ A++  +    +++AE LRLA
Sbjct: 362 ALKAHLLKIAGWQPA-GESIFMARTRHLQALQMVQGHLQNAAVYLEQ--PELLAEELRLA 418

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              L  ITG    + LL  IFS+FCIGK
Sbjct: 419 QHVLSSITGEFTPDDLLGEIFSRFCIGK 446


>gi|332293385|ref|YP_004431994.1| tRNA modification GTPase TrmE [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171471|gb|AEE20726.1| tRNA modification GTPase TrmE [Krokinobacter diaphorus 4H-3-7-5]
          Length = 462

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 150/461 (32%), Positives = 240/461 (52%), Gaps = 27/461 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR- 59
           ++TI A+++ A   AI++IR+SG    ++   I K    K     +  ++     +DG  
Sbjct: 4   QDTIVALASPAGAGAIAVIRVSGAQALEITSPIFKSVSGKVLSEQKTHTIHLGHIMDGER 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ L+ +F    S+TGE + E   HG   +   I++ L +    R A  GEF+ R+F 
Sbjct: 64  TIDEVLVSLFKGTNSYTGEPTVEISCHGSNYIQQEIIQLLLRS-GCRAAQAGEFTLRSFI 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S+ E    ++M+ M G  S+   Q   +L +  S IE +LDFS
Sbjct: 123 NGKMDLSQAEAVADLIASDNEASHHIAMQQMRGGFSNEIAQLRQELLNFASLIELELDFS 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV+     +    I  +   +   I     G +I+NG  + I+G  N GKS+L NAL
Sbjct: 183 E-EDVEFADRSQFKELIARITKVLKRLIDSFATGNVIKNGIPVAIVGEPNVGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DI GTTRD +  +L + G   +  DTAGIRET D++E  GIK+TF +++ A
Sbjct: 242 LNEERAIVSDIAGTTRDTIEDELSIGGIGFRFIDTAGIRETVDVIEGLGIKKTFEKIKQA 301

Query: 300 DLILLLKEINS--------KKEISFPKN----IDFIFIGTKSDLYSTYTEEYD------- 340
            +++LL   N         K EI   KN       + +  K D  S    +         
Sbjct: 302 QVVILLFSANEFLANGATFKTEIEKIKNKFPLKPLVIVANKVDQVSESDVKEISNQIPNL 361

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-D 399
           HL+S+   +G++EL  K+   ++    +   +I ++ RH   L + +  +E        D
Sbjct: 362 HLLSAKENKGVDELKTKLLEFVNTGALRNDETIVTNSRHYDALLKALEEIEKVQYGLDTD 421

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D++A ++R A    G+ITG V  ++LL  IF+ FCIGK
Sbjct: 422 LSGDLMAIDIREALYHFGEITGQVTNDELLGNIFANFCIGK 462


>gi|158301166|ref|XP_320903.3| AGAP002133-PA [Anopheles gambiae str. PEST]
 gi|157012341|gb|EAA00934.3| AGAP002133-PA [Anopheles gambiae str. PEST]
          Length = 486

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 175/467 (37%), Positives = 264/467 (56%), Gaps = 33/467 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLR-YFFGLDGRILDKG 64
           TIF +S+G     +++IR+SG +   + +   + K  P PR+A L   F G    ++D+G
Sbjct: 20  TIFGLSSGFGKCGVAVIRVSGSASRAIVDKKTRLKSFPEPRRAVLTKIFHGQTNAMIDRG 79

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LL+ FP P+SFTGED+ EFHVHGG A+V+ + + LA  P+ R+A PGEF++RAF  GK+D
Sbjct: 80  LLLWFPGPQSFTGEDTIEFHVHGGTAIVSAMYDSLATFPDTRIAEPGEFTKRAFYAGKMD 139

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QR+ ++   +G+LSS Y     +L    + IEA +DF+E++DV
Sbjct: 140 LTEVEGLADLIHAETEAQRKQALRQANGQLSSFYNDLRTQLVQAIASIEAYIDFAEDQDV 199

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +      + +I      + +H++  + GE +RNG +  I+G  N GKSSL N L++++V
Sbjct: 200 DDNVLSVAVQNIEGAIGQLKAHLNDNRRGERLRNGVRTAIVGAPNVGKSSLINLLSQRNV 259

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLIL 303
           +IVT I GTTRD++    D+ GY V + DTAG+R+ T+D+VE EGI R    VE+ADL+L
Sbjct: 260 SIVTSIAGTTRDIVESHYDIGGYPVILGDTAGLRQGTEDVVESEGIARARAYVESADLLL 319

Query: 304 LLKEINSKKEISFPKNI----------------DFIFIGTKSDLYSTYTEEYDHLI---- 343
           L+ + +  + +                        + +  K DL ++ T E         
Sbjct: 320 LVVDASRVETVDRLDTYLREYMETLGLDADMMSRALIVLNKCDLLTSGTWERLSAHNNSF 379

Query: 344 ---SSFTGEGLEELINKIKSILSNKFKK--LPFSIPSHKRHLYHLSQTVRYLEMA----- 393
              S  T  GL EL+ ++K+ L        +     S +RH YHL Q +  LE       
Sbjct: 380 SFLSCQTQSGLPELLERLKTRLVQLCGDPSVESPTISQERHRYHLKQCLACLEQFRDYFH 439

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                +  L I+  +LR A   +GKITG V+ +++LD+IFS FCIGK
Sbjct: 440 ETGAPNRDLAIVTHHLRNAVRCIGKITGTVETDEILDVIFSTFCIGK 486


>gi|221201821|ref|ZP_03574858.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2M]
 gi|221207673|ref|ZP_03580681.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2]
 gi|221172519|gb|EEE04958.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2]
 gi|221178241|gb|EEE10651.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2M]
          Length = 464

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/466 (32%), Positives = 243/466 (52%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  ++  PR AS   F  
Sbjct: 2   LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPMIDALCG-QRLAPRHASYVPFLD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 61  AQGVPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDVGRAVGLRLAEPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVIDLRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPE-EEIDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIART 299

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +        +      FP  +  + +  K+DL          +   
Sbjct: 300 WSEIERADVVLHLLDSRTGMTADDDAIAARFPAGVPVVRVLNKTDLTGVPASVAHPAAEG 359

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+ +
Sbjct: 360 DLTEVHLSAKRGDGIDLLRAELLRIAGWQAG-AEGVYLARERHLIALRAAQDHLARAAEH 418

Query: 397 EKD--CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +     LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|313202487|ref|YP_004041145.1| tRNA modification GTPase TrmE [Methylovorus sp. MP688]
 gi|312441803|gb|ADQ85909.1| tRNA modification GTPase TrmE [Methylovorus sp. MP688]
          Length = 446

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 157/448 (35%), Positives = 244/448 (54%), Gaps = 19/448 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      I ++R+SGP+  Q+   +     P PR A+   F    G+++D G+
Sbjct: 5   DTIAAIATAPGSGGIGVVRISGPASAQIAAAVLGHCPP-PRHAAYLPFKEAGGQLIDSGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I +  P S+TGED  E   HGG A++  +          R A PGEF+RRAF N K+DL
Sbjct: 64  AIFYAGPHSYTGEDVLELQAHGGPALMQLL-LLRCLQLGARQAEPGEFTRRAFLNDKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++AD+I++ T    R ++  +SGE S      ++ L ++R ++EA LDF + ED+ 
Sbjct: 123 AQAEAVADVINAATAEAARSAVRSLSGEFSRYIQDLLESLINLRMYVEACLDFPD-EDID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S   V   +  + + +       + G ++R G ++V++G  N GKSSL N LA ++VA
Sbjct: 182 FISQGRVAEKLQNITDALELVFKGARQGNLLREGIQVVLVGQPNVGKSSLMNQLAGEEVA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT I GTTRD +   + +EG  + + DTAG+RET+D VEK+GI RT+  +ENA+  LLL
Sbjct: 242 IVTPIAGTTRDTIKNVVQIEGVPLHLIDTAGLRETEDEVEKQGIARTWRALENANAALLL 301

Query: 306 KEI-----NSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLE 352
            +       ++K I    P N+  I++  K DL+S    + +H       IS+  G GL+
Sbjct: 302 VDAAHGITETEKSILERLPANLPKIWVHNKIDLHSEQPRQREHEGELHLYISAKLGLGLD 361

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            L   +  I   +         +  RHL  L     +L+ A++  +    +++AE LRLA
Sbjct: 362 ALKAHLLKIAGWQPA-GESIFMARTRHLQALQMVQGHLQNAAVYLEQ--PELLAEELRLA 418

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +L  ITG    + LL  IFS+FCIGK
Sbjct: 419 QHALSSITGEFTPDDLLGEIFSRFCIGK 446


>gi|227539827|ref|ZP_03969876.1| tRNA modification GTPase TrmE [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240469|gb|EEI90484.1| tRNA modification GTPase TrmE [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 458

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/454 (34%), Positives = 244/454 (53%), Gaps = 18/454 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLDGR-I 60
            ++ETI A++T     AI++IRLSG    ++   + + K    +   ++ +    DG  I
Sbjct: 7   QQQETIVALATANGNGAIAVIRLSGKDAIEIANQVFRGKDLSAQPSHTVHFGTIRDGEEI 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L+ +F  P S+T E   E   H    ++  I+  L +    R A PGEF+ RAF N
Sbjct: 67  LDEVLVTLFVGPNSYTKEHVVEISTHNSKYIIERIISLLIR-KGARAAKPGEFTLRAFLN 125

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G +DL +AE++ADLI+S +    +++M+ M G  S+   +  D L H  S IE +LDFSE
Sbjct: 126 GGMDLSQAEAVADLIASNSAASHQIAMQQMRGGFSNQLRKLRDDLIHFASLIELELDFSE 185

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            EDV+  +  ++   IL + + +   I   + G +++NG  +VI G  N GKS+L NAL 
Sbjct: 186 -EDVEFANRDQLKLLILQINSVVRKLIQSFEQGNVLKNGVPVVIAGKPNVGKSTLLNALL 244

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV+DI GTTRD +  ++++ G   +  DTAGIRET D++E +G++RT  +++ A 
Sbjct: 245 NEERAIVSDIAGTTRDTIEDEINIHGVTFRFIDTAGIRETVDVIEAKGVERTREKMKQAR 304

Query: 301 LILLLK--------EINSKKEISFPKNIDFIFIGTKSDLYST-----YTEEYDHLISSFT 347
           LI+ L         ++ ++ E     NI F+ I  KSDL S      Y       IS+  
Sbjct: 305 LIIYLFDPVQDTIADVETQLEEVRSLNIPFVTIINKSDLLSEEQRAGYQSLSPVFISAKE 364

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIA 406
             G+EEL +++   ++         + ++ RH+  L  T   L       +     D +A
Sbjct: 365 QIGVEELKDELLRQVNLANLNTDDVMVTNIRHVEALQHTEDSLGRVLFGIDNPVTSDFLA 424

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++R A   LG+ITG V  + LLD IFSKFCIGK
Sbjct: 425 MDIRQALYHLGEITGSVSTDDLLDNIFSKFCIGK 458


>gi|14195296|sp|Q9RL97|MNME_STRAG RecName: Full=tRNA modification GTPase mnmE
 gi|6448626|emb|CAB61255.1| thiophene degradation protein F [Streptococcus agalactiae]
          Length = 462

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 141/461 (30%), Positives = 246/461 (53%), Gaps = 22/461 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGL 56
           +  E +TI A+ST     AI I+R+SG    ++   I +  +       +  +L Y   +
Sbjct: 3   ITKEFDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGLRGKDLSAIQSHTLNYGHIV 62

Query: 57  D---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           D     ILD+ +L V  +P++FT ED  E + HGGIAV N IL+ +    +   A PGEF
Sbjct: 63  DPDKNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILATMD-HNAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           ++RAF NG++DL +AE++ DLI ++T  Q   +S++ + G L +L      ++ +  + +
Sbjct: 122 TKRAFLNGRVDLTQAEAVMDLIRAKTIKQWIYVSLKQLDGSLKTLINNTRQEILNTLAQV 181

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E ++D+ E +DV+  ++  +       +  + + +   + G+I+R G     +G  N GK
Sbjct: 182 EVNIDYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAKIGRPNVGK 241

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           S L N L +++ AIVTDI GTTRDV+   ++++G  +K+ DTAGIR+TDDIVEK G++R+
Sbjct: 242 SQLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERS 301

Query: 293 FLEVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHL 342
              +E ADL+LL+        +  +  +   K  + I +  K+DL          E    
Sbjct: 302 KKALEEADLVLLVLNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKIEVNELPENVIP 361

Query: 343 ISSFTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
           IS    E ++++  +I  I  +     +   +  S+ RH+  + + V  L+  +   E  
Sbjct: 362 ISVLENENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLKAVNEGLELG 421

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D++  ++      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 422 MPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 462


>gi|121606994|ref|YP_984323.1| tRNA modification GTPase TrmE [Polaromonas naphthalenivorans CJ2]
 gi|205415792|sp|A1VUS4|MNME_POLNA RecName: Full=tRNA modification GTPase mnmE
 gi|120595963|gb|ABM39402.1| tRNA modification GTPase trmE [Polaromonas naphthalenivorans CJ2]
          Length = 478

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 168/474 (35%), Positives = 245/474 (51%), Gaps = 43/474 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
            I A++T      + I+RLSG     V + +C +K   PR+A+   F    G+I+DKGL 
Sbjct: 8   PIVAIATAPGRGGVGIVRLSGQRIAPVVQALCGRKLS-PRQATYLPFRDAHGQIIDKGLA 66

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL-------------RLANPGEF 113
           I FP+P S+TGED  E   HGG  V+  +L    +                 R+A PGEF
Sbjct: 67  IFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAALDPATGQPVLAQLRVAEPGEF 126

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           + RAF N KIDL +AE++ADLI + TE   R +   MSGE S      +++L H+R  +E
Sbjct: 127 TERAFLNDKIDLAQAEAIADLIDASTETAARSAARSMSGEFSQAVNTLLEQLIHLRMLVE 186

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E ED+      +    +L L+  ++S +++   G I+R G K+VI G  N GKS
Sbjct: 187 ATLDFPE-EDIDFLQQADAQGQLLRLQATLASVLARATQGAILREGIKVVIAGQPNVGKS 245

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT + GTTRD ++  + +EG  + + DTAG+RE  D VEK GI+R +
Sbjct: 246 SLLNALAGAELAIVTPVAGTTRDKVSQLIQIEGVPLHVVDTAGLREALDEVEKIGIQRAW 305

Query: 294 LEVENADLILLLKE----------------------INSKKEISFPKNIDFIFIGTKSDL 331
            E+E+AD +L L +                      + S   +  PKN   I +  KSD+
Sbjct: 306 TEIESADAVLFLHDLARHDATENPLYAINYIADDARLQSALALKLPKNTAIIDVWNKSDM 365

Query: 332 YSTYTEEYDHL---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
                    +    IS+ TG GL+ L  ++  ++  +         + +RH+  L     
Sbjct: 366 AGPELLRQVNGGVLISAKTGAGLQALREQLLRVVGWQAA-PEGVFMARERHVSALRSVQI 424

Query: 389 YLEMASLNEKDC--GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L  A    +     LD++AE+LR A + L  ITG  + + LL  IFSKFCIGK
Sbjct: 425 QLLTAQNQLQAAVPALDLLAEDLRQAQLHLSSITGAFNADDLLGEIFSKFCIGK 478


>gi|303230675|ref|ZP_07317425.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-049-V-Sch6]
 gi|302514730|gb|EFL56722.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-049-V-Sch6]
          Length = 461

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 147/460 (31%), Positives = 245/460 (53%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGL-D 57
            +TI A++T      + IIR+SG   F +   + K     P      R            
Sbjct: 4   DDTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSAGTVPLMDRQNRTIQYGTIVDPAT 63

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+ L+++   P S+T ED  E   HGGI  V  IL+ L    ++R+A  GEF++RA
Sbjct: 64  NKTVDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLV-NHDVRMAEAGEFTKRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I ++TE    L++  + G +SS      ++L  + + +E  +D
Sbjct: 123 FMNGRIDLTQAEAIIDIIEAKTEDSLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTID 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E ED+++ +S+EV   +  +   +   +S    G +IR+G   VI+G  NAGKSSL N
Sbjct: 183 YPE-EDIEDVTSQEVREQLEPILKAVDELLSTANTGRLIRDGITTVIVGRPNAGKSSLMN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL +++ AIVTDIPGTTRD +   + +EG  +++ DTAGIR+T D VE  G++R    + 
Sbjct: 242 ALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYIN 301

Query: 298 NADLILLLKEIN---SKKEISFP---KNIDFIFIGTKSDLYSTYTEEYDHLISSFT---- 347
            AD++L + + +   + +EI        ++ I +  KSD+    T+E      +FT    
Sbjct: 302 KADIVLCVIDGSTPLTPEEIEILTSVSGLNTIVLLNKSDVAQVVTDETIKEHGTFTAIER 361

Query: 348 -----GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
                GEG   L   ++ ++   + K+   ++ S+ RH+  + Q    +E A S  +   
Sbjct: 362 ISAKEGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEQALSSIDMGM 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D +A +LR A   LG ITG    E ++D +F++FC+GK
Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFNRFCLGK 461


>gi|82752290|ref|YP_418031.1| tRNA modification GTPase TrmE [Staphylococcus aureus RF122]
 gi|123549492|sp|Q2YZB8|MNME_STAAB RecName: Full=tRNA modification GTPase mnmE
 gi|82657821|emb|CAI82276.1| tRNA modification GTPase [Staphylococcus aureus RF122]
          Length = 459

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 150/460 (32%), Positives = 241/460 (52%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI ++ST     AI I+RLSGP   ++ + + K K       S    +   G I+D   
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINY---GHIIDPES 60

Query: 66  LIV--------FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             V          +P++FT ED  E + HGGI  +N +LE L      RLA PGEF++RA
Sbjct: 61  KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARLAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D + S+T+   +++M  + G LS L  +    +  I + +E ++D
Sbjct: 120 FLNGRIDLSQAEAVMDFVRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVEK G++R+   + 
Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299

Query: 298 NADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYT---------EEYDHL 342
            ADLIL +   N              KN D I I  K DL              +     
Sbjct: 300 QADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQ 359

Query: 343 ISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
            S    EG++EL  +I+ +      +    +  S+ RH+  L Q  + ++ A    E   
Sbjct: 360 TSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGV 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 420 PMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459


>gi|167629165|ref|YP_001679664.1| tRNA modification GTPase trme [Heliobacterium modesticaldum Ice1]
 gi|205829157|sp|B0TAB6|MNME_HELMI RecName: Full=tRNA modification GTPase mnmE
 gi|167591905|gb|ABZ83653.1| tRNA modification GTPase trme [Heliobacterium modesticaldum Ice1]
          Length = 466

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 148/465 (31%), Positives = 239/465 (51%), Gaps = 32/465 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLR-----YFFGLDG 58
           +TI AV+T      I I+R+SGP    V + + + +  +     AS            D 
Sbjct: 4   DTIAAVATPPGEGGIGIVRVSGPGARDVLKAVFRPRYGRGVDDWASHTLHLGTIIHPDDH 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R++D+ L+    +P +FT ED  EFH HGG   V   L  + +    RLA PGEF+RRAF
Sbjct: 64  RVIDEALVAWMVAPRTFTTEDVVEFHCHGGSVPVRETLGAVLRA-GARLAEPGEFTRRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
             G++DL +AE++ ++I ++T      ++  + G+LS    +  D L  + + +EA +DF
Sbjct: 123 LGGRLDLAQAEAIIEVIRAKTRDGLGAAVSQLEGQLSRRIRKVRDDLLALLAHLEAMIDF 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E ED+ +  S+ +  D++ ++  I   + + + G ++R G++ VI+G  N GKSSL NA
Sbjct: 183 PE-EDLPDIGSERICTDLMQIQRQIGDMLERSRTGRVLREGWRTVIVGRPNVGKSSLMNA 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVT+IPGTTRD +   +DL G  ++I DTAGIRET+D+VE+ G+++T   +E 
Sbjct: 242 LLDEQRAIVTEIPGTTRDAIEEYIDLGGIPLRIVDTAGIRETEDVVERIGVEKTREYLEK 301

Query: 299 ADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEE----------YDHL 342
           ADL L++ +         +  +        + +  KSDL     +E              
Sbjct: 302 ADLALVVLDGSDSLTAEDETLLLSLAGRPAVVLVNKSDLAVRRLDEKRLRSLVGEMPIIS 361

Query: 343 ISSFTGEGLEELINKIKSILSNKFK------KLPFSIPSHKRHLYHLSQTVRYLEMAS-L 395
           +S+  G GL+EL   I+ ++               ++ +  RH   L ++  +L  A   
Sbjct: 362 VSAKEGWGLKELTELIRRMVYGDDGLGYAPDGGRLALVTQARHREALERSYAHLRQALDA 421

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                  D +  +L+ A  +LG+ITG    E +LD IFS FCIGK
Sbjct: 422 VAHGASPDFLTIDLKAAWEALGEITGDTVGEDILDKIFSSFCIGK 466


>gi|158426332|ref|YP_001527624.1| tRNA modification GTPase TrmE [Azorhizobium caulinodans ORS 571]
 gi|205829055|sp|A8I264|MNME_AZOC5 RecName: Full=tRNA modification GTPase mnmE
 gi|158333221|dbj|BAF90706.1| small GTP-binding protein [Azorhizobium caulinodans ORS 571]
          Length = 435

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 173/441 (39%), Positives = 261/441 (59%), Gaps = 7/441 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGR 59
           M    +TIFA+S+G +PS ++++R SGP   +    +     P PR A          G 
Sbjct: 1   MTRSSDTIFALSSGRVPSGVAVVRASGPRAREAGLALAG-LVPPPRVARYVALREPGTGD 59

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+GL++ FP P S TGED+ E H+HGG AVV  +L  L K+P  R A  GEF+RRA  
Sbjct: 60  LLDRGLILFFPGPRSATGEDTLELHLHGGPAVVTAVLRTLVKLPGFRPAAAGEFTRRAHA 119

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL E E LADLI +E+E QRR ++   SG LS     W ++L    + +EA +DFS
Sbjct: 120 NGKMDLAEVEGLADLIVAESEAQRRQALAQSSGALSRAVAGWRERLIRALALVEATIDFS 179

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +E DV +  +     +   L  ++++ ++    GE +R+G+ I I G  NAGKS+L N L
Sbjct: 180 DEGDVPDDLTGPARAEAAALCTELTTALADADRGERVRDGFIIAIAGPPNAGKSTLLNRL 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A ++ AIV+ +PGTTRDVL + L L G  V + DTAG+RETDD+VE EG++R  +  E +
Sbjct: 240 AGREAAIVSPVPGTTRDVLEVHLHLAGQAVTLVDTAGLRETDDLVEAEGVRRARVRAEGS 299

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
           DL+L L +  +      P     + + TK+D+     EE + +IS+ TG G+  LI +++
Sbjct: 300 DLVLWLSDDGTAPPTDMPA---PLRVRTKADVTGAEGEEDEIVISAQTGAGINTLIAEME 356

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
             L       P ++ + +R  + LS  +  L+ A+L  +    D++AE+LRLA+ +L ++
Sbjct: 357 RRLGEMGGGEP-ALVTRERQRHALSDALYELD-AALAIQTHDEDLMAEHLRLAARALDQV 414

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
            G VDVE +L+ +F  FCIGK
Sbjct: 415 VGRVDVEDVLESLFRTFCIGK 435


>gi|329668160|gb|AEB94108.1| putative tRNA modification GTPase TrmE [Lactobacillus johnsonii DPC
           6026]
          Length = 461

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 144/459 (31%), Positives = 240/459 (52%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            + +TI A+ST      ISI+RLSG     +   + K      +  S    +G       
Sbjct: 6   TQFDTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGAD-LTQVPSHTIHYGHIVDPKT 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ ++ V  +P++FT ED  E + HGG+ V N IL+ L      R+A+PGEF++RA
Sbjct: 65  KDVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R+++M  ++G L         +L    +  E ++D
Sbjct: 124 FMNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIRTMRQELLDTMAHEEVNID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D+ + +S+E+      +   I   +   + G+IIRNG    I+G  N GKSSL N
Sbjct: 184 YPEY-DMDDLTSQEMKKKAEEVSKQIDQLLKTAQEGKIIRNGLATAIVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTDI GTTRD L   + ++G  +K+ DTAGI  T++ VEK G++R+   + 
Sbjct: 243 YLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTENKVEKIGVERSKKAIA 302

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLI 343
            ADL+LLL + +       K  ++   N   I I  K DL +  ++E           + 
Sbjct: 303 EADLVLLLLDASQDLTDEDKNLLNLTANKKRIIILNKQDLGTKISQEMIREITDNPIIVT 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CG 401
           S    E +  L N I+ +  +  +      + +++R    L++  + LE       D   
Sbjct: 363 SILKQENMAALENAIEQLFFSGIENSQNQILVTNQRQAGLLAKAKQSLEDVVNGIDDAMP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD++  +L+ A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 423 LDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461


>gi|291296117|ref|YP_003507515.1| tRNA modification GTPase TrmE [Meiothermus ruber DSM 1279]
 gi|290471076|gb|ADD28495.1| tRNA modification GTPase TrmE [Meiothermus ruber DSM 1279]
          Length = 437

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 150/446 (33%), Positives = 241/446 (54%), Gaps = 17/446 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +    + I A++T     A+ IIR+SG    ++   + K K P  + A  R+  G     
Sbjct: 3   LPSLSDVIAAIATPPGKGAVGIIRVSGEGALELVSRLWKGKNP-SKLAGGRFTHGQICDP 61

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G +LD+ LL+VF  P S+TG+DSAE H HG  AV+  +L+ L ++   R A PGEF+ 
Sbjct: 62  HTGEVLDEALLLVFRQPHSYTGQDSAELHTHGSPAVLRRVLQALFEL-GARPAQPGEFTL 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RA+ NGK+DL +AES+  LI +E++  RR ++ G+S  LS       ++L  + + I+A 
Sbjct: 121 RAYLNGKMDLAQAESVLSLIEAESDAARRQALRGLSAGLSQKISYLSEQLFDLLAHIQAW 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LD+ E    +     ++   +  +  +I+  ++    G I + G +I ++G  NAGKSSL
Sbjct: 181 LDYPE----EGVEPAQIQAGLEPVLQEITHLLATAPAGRIAQKGARIALVGAPNAGKSSL 236

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL   + AIVT IPGTTRD L   L++ G  +   DTAG+RETDD++EK G++R    
Sbjct: 237 LNALLGYERAIVTPIPGTTRDYLEAPLEIAGVPIVAVDTAGVRETDDVIEKSGVERALAI 296

Query: 296 VENADLILLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
            + ADL+L L + +  +    P   +    + TK+DL   +++     +SS TG GL EL
Sbjct: 297 AQEADLVLYLADQSQPRPTPPPLPWERTLKVATKADLAPAWSDAAYLRVSSQTGLGLPEL 356

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
             +I   L  +  +      S++RH+  L +   +L+ A         D+ A ++  A  
Sbjct: 357 RQQIHHRLLGQAPEGEL-WVSNERHVEALRRAQGHLQEAL----QAPEDLAALSIEQALE 411

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L +I G    E+++D +F  FC+GK
Sbjct: 412 ALAEILGKDVSEEVIDRVFRNFCVGK 437


>gi|224023939|ref|ZP_03642305.1| hypothetical protein BACCOPRO_00656 [Bacteroides coprophilus DSM
           18228]
 gi|224017161|gb|EEF75173.1| hypothetical protein BACCOPRO_00656 [Bacteroides coprophilus DSM
           18228]
          Length = 476

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 147/478 (30%), Positives = 244/478 (51%), Gaps = 40/478 (8%)

Query: 1   MN--HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFG- 55
           MN    ++TI A++T     AI  IR+SGP    + + I K    KP   +A   + FG 
Sbjct: 1   MNILQTEDTICAIATAQG-GAIGTIRVSGPEAITLTDRIFKPVSGKPLAERAPYTFTFGH 59

Query: 56  ---LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
               +G I+D+ L+ +F +P S+TG+DS E   HG   ++  +++ L +    R A PGE
Sbjct: 60  ILTPEGEIIDEVLVSLFRAPHSYTGQDSTEISCHGSSYILQQVMQLLIR-QGCRAAGPGE 118

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           +++RAF NGK+DL +AE++ADLI+S +    R++M  M G  S       DKL H+ S +
Sbjct: 119 YTQRAFLNGKMDLSQAEAVADLIASTSAATHRMAMNQMRGGFSRELAVLRDKLLHLTSLM 178

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E +LDFS+ E+++     E+      ++  I   +    +G  ++NG  + I+G +NAGK
Sbjct: 179 ELELDFSDHEELEFADRSELEAIARQIEQVIHHLVDTFSVGNALKNGVPVAIVGETNAGK 238

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           S+L NAL  ++ AIV+DI GTTRDV+   ++L G   +  DTAGIRET D +E  GI+R+
Sbjct: 239 STLLNALLNEERAIVSDIHGTTRDVIEDTMNLGGITFRFIDTAGIRETTDTIESLGIERS 298

Query: 293 FLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL- 342
           F +++ AD++L + +    +E         +   +    + +  K DL S      D   
Sbjct: 299 FQKLDQADIVLWIIDATCAEEQYHQLADKILPRCEGKHLVIVLNKVDLLSPADSSADEQL 358

Query: 343 ------------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                             +S+   EGL +L  ++    +         + S+ RH   LS
Sbjct: 359 ARLKTTLPDLPEDACVLSLSAKQKEGLSQLQKQLVDFTALPDLSQNDVVVSNIRHYEALS 418

Query: 385 QTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           + +  +             D+++++LR     LG+I  G ++ +++L  IF  FC+GK
Sbjct: 419 RALEAIHRVQDGLAMQLSGDLVSQDLRECLYHLGEIVGGTIETDEVLGNIFKHFCVGK 476


>gi|313675601|ref|YP_004053597.1| tRNA modification GTPase trme [Marivirga tractuosa DSM 4126]
 gi|312942299|gb|ADR21489.1| tRNA modification GTPase trmE [Marivirga tractuosa DSM 4126]
          Length = 457

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 253/458 (55%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFGLD 57
           ++  KETI A+ST     AI++IRLSG     +   + K K    +K   A        +
Sbjct: 2   LDQLKETIIALSTAPGVGAIAVIRLSGEDAITITNSVFKGKNLLQQKSHTAHFGTIRNDE 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G I+D+ +  +F +P SFT E+  E   HG   +V  +++ L     +RLA  GEF++RA
Sbjct: 62  GEIIDEVVATLFIAPHSFTKENVVEISCHGSPYIVQRLIK-LFLTKGVRLAKAGEFTQRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+ DL +AE++ADLI+++TE   + ++  M G  S    Q   +L H  S IE +LD
Sbjct: 121 FLNGQFDLAQAEAVADLINADTEASHKAALNQMRGGFSEQIKQLRAELIHFASMIELELD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E EDV+     ++   +  L + I++ +S   LG +I+NG   VI G  N GKS+L N
Sbjct: 181 FGE-EDVEFADRDDLKKLVNQLLSVITALVSSFDLGNVIKNGVPTVIAGKPNTGKSTLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  ++ AIV+DI GTTRD +  +++LEG + +  DTAG+R+T+D VE  G++RT  +++
Sbjct: 240 ALLNEEKAIVSDIAGTTRDFIEDEINLEGVVFRFIDTAGLRDTEDKVEAIGVQRTKDKMK 299

Query: 298 NADLILLLKEINSK------KEISFPKN--IDFIFIGTK-----SDLYSTYTEEYD-HLI 343
            A LI+ + ++ +       ++I+  +N  I FI +G K      DLY+   ++ +   I
Sbjct: 300 QASLIVYMFDLKNDTLTEVNRDINMLENLGIPFIKVGNKLDEAQQDLYNEMKKDKNTLFI 359

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402
           S+   EGLE L  K+   ++    K   ++ ++ RH  +L QT   L        D    
Sbjct: 360 SAINKEGLEALKTKLVETVNLDNFKTGDTVVTNIRHYDNLVQTQNSLNAVLRGLDDNITG 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D +A ++R A   LG+ITG +  + LL  IFSKFCIGK
Sbjct: 420 DFLALDIRHALRFLGEITGEITTDDLLANIFSKFCIGK 457


>gi|114799625|ref|YP_762235.1| tRNA modification GTPase TrmE [Hyphomonas neptunium ATCC 15444]
 gi|123027538|sp|Q0BWA8|MNME_HYPNA RecName: Full=tRNA modification GTPase mnmE
 gi|114739799|gb|ABI77924.1| tRNA modification GTPase TrmE [Hyphomonas neptunium ATCC 15444]
          Length = 441

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 164/438 (37%), Positives = 265/438 (60%), Gaps = 2/438 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A+++G  PSAI+IIR+SGP+  ++ + +     P P++A+L Y +  DG ++D+G
Sbjct: 4   RDTICALASGPPPSAIAIIRISGPAVAEIGKSLLASGLPEPKRAALTYIYDSDGALIDQG 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + +   +P S+TGED+ E ++HGG AV++  L  L  +  +RLA PGEF+RRAFENGK+D
Sbjct: 64  IALYANAPHSYTGEDTLELYLHGGPAVIDHALRGLTAIAGVRLAEPGEFTRRAFENGKLD 123

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE +AD+I +ET  Q+  ++  + G L+ +Y  W ++LT   + IE  +DF +E DV
Sbjct: 124 LTEAEGVADIIEAETGAQKAQALRQLGGGLTEIYDGWREELTGTLALIEVMIDFPDEGDV 183

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +++ +L+ +  + ++I + +    +GE IR+G+++ I+G  NAGKSS+ N LA+++ 
Sbjct: 184 PEDTARPILSRLEKIMSEIETALGDRGVGERIRDGFRVAIVGPPNAGKSSILNRLARREA 243

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDV+ + L L G +V I+DTAG+RET+D+VE EG++R       ADL + 
Sbjct: 244 AIVTDIAGTTRDVVEVRLVLGGQVVWIADTAGLRETEDVVEAEGVRRARRAAAEADLRIH 303

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTY-TEEYDHLISSFTGEGLEELINKIKSILS 363
           + +               I +  K+D        +    IS  TGEG+++L + I + +S
Sbjct: 304 VIDGTDPSPPPEQVETQDIIVFNKADQRPAILAPDGALPISVITGEGIDKLESWIAAFVS 363

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDIIAENLRLASVSLGKITGC 422
            +   +   + +  RH   L   +  L  A      D G ++  E++R+A   L  + G 
Sbjct: 364 RRASSVEAPVITRARHREKLVAGLASLTAARDALVSDMGAELAGEDVRMALRQLSSVIGR 423

Query: 423 VDVEQLLDIIFSKFCIGK 440
           VDVE +L  +FSKFCIGK
Sbjct: 424 VDVEDVLGAVFSKFCIGK 441


>gi|291561652|emb|CBL40451.1| tRNA modification GTPase trmE [butyrate-producing bacterium SS3/4]
          Length = 471

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 151/456 (33%), Positives = 239/456 (52%), Gaps = 23/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDG-RI 60
           +TI A++T    S I I+R+SG +  +V E I +    KK       ++ Y +  DG   
Sbjct: 18  DTIAAIATAMGNSGIGIVRISGENAVEVAEKIFREPGKKKLSEAESHTIHYGYVYDGDET 77

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL++   P S+T ED+ E   HGG+ V   ILE + K    RLA PGEF++RAF N
Sbjct: 78  VDEVLLMLMRGPRSYTAEDTVEIDCHGGMLVTRRILETVLKA-GARLAEPGEFTKRAFLN 136

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I+++ E   + S+  + G +S    +  D++ +  +FIE+ LD  E
Sbjct: 137 GRIDLSQAEAVIDVINAKNEYALQSSVSQLRGSVSKEIHEIRDQIIYEIAFIESALDDPE 196

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              +  +  +++L  +L +K  +   I     G ++  G K VILG  NAGKSSL N L 
Sbjct: 197 HISMDGY-GEKLLKVVLSVKKKLEKLIRSSSNGRVVSEGVKTVILGKPNAGKSSLMNVLV 255

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTD+ GTTRD+L   + L+G  + + DTAGIR+T+D+VEK G+ R   E + AD
Sbjct: 256 GEDRAIVTDVAGTTRDILEEHIYLQGISLNVVDTAGIRDTEDVVEKIGVSRAMEEAKKAD 315

Query: 301 LILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISSF 346
           LI+ + + + + +      + F K    + +  KSDL    + +            IS+ 
Sbjct: 316 LIIYVVDGSRELDENDYQIMDFIKERKSVVLLNKSDLEPVVSADEVEKRSGHKVIGISAK 375

Query: 347 TGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDI 404
              G++ L  +IKS+            + ++ RH+  L      + M     E     D 
Sbjct: 376 EETGIDLLEEEIKSLFYEGEIDFNDQVMITNVRHVKALKDAFESMSMVENSIENGMPEDF 435

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +L  A   LG I G    + L++ IFSKFC+GK
Sbjct: 436 YSIDLMDAYEKLGLIVGESVEDDLVNEIFSKFCMGK 471


>gi|300774015|ref|ZP_07083884.1| tRNA modification GTPase TrmE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760186|gb|EFK57013.1| tRNA modification GTPase TrmE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 458

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 154/454 (33%), Positives = 244/454 (53%), Gaps = 18/454 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLDGR-I 60
            ++ETI A++T     AI++IRLSG    ++   + + K    +   ++ +    DG  I
Sbjct: 7   QQQETIVALATANGNGAIAVIRLSGKDAIEIANQVFRGKDLSAQPSHTVHFGTIRDGEEI 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L+ +F  P S+T E   E   H    ++  I+  L +    R A PGEF+ RAF N
Sbjct: 67  LDEVLVTLFVGPNSYTKEHVVEISTHNSKYIIERIISLLIR-KGARAAKPGEFTLRAFLN 125

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G +DL +AE++ADLI+S +    +++M+ M G  S+   +  D L H  S IE +LDFSE
Sbjct: 126 GGMDLSQAEAVADLIASNSAASHQIAMQQMRGGFSNQLRRLRDDLIHFASLIELELDFSE 185

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            EDV+  +  ++   IL + + +   I   + G +++NG  +VI G  N GKS+L NAL 
Sbjct: 186 -EDVEFANRDQLKQLILQINSVVRKLIQSFEQGNVLKNGVPVVIAGKPNVGKSTLLNALL 244

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV+DI GTTRD +  ++++ G   +  DTAGIRET D++E +G++RT  +++ A 
Sbjct: 245 NEERAIVSDIAGTTRDTIEDEINIHGVTFRFIDTAGIRETVDVIEAKGVERTREKMKQAR 304

Query: 301 LILLLK--------EINSKKEISFPKNIDFIFIGTKSDLY-----STYTEEYDHLISSFT 347
           LI+ L         ++ ++ E     NI F+ I  KSDL      + Y       IS+  
Sbjct: 305 LIIYLFDPVQDTIADVETQLEEVRSLNIPFVTIINKSDLLTEEQRAEYRTLSPVFISAKE 364

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIA 406
             G+EEL +++   ++         + ++ RH+  L  T   L       +     D +A
Sbjct: 365 QIGVEELKDELLRQVNLANLNTDDVMVTNIRHVEALQHTEDSLSRVLFGIDNPVTSDFLA 424

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++R A   LG+ITG V  + LLD IFSKFCIGK
Sbjct: 425 MDIRQALYHLGEITGSVSTDDLLDNIFSKFCIGK 458


>gi|110638429|ref|YP_678638.1| tRNA modification GTPase TrmE [Cytophaga hutchinsonii ATCC 33406]
 gi|123354534|sp|Q11TG8|MNME_CYTH3 RecName: Full=tRNA modification GTPase mnmE
 gi|110281110|gb|ABG59296.1| tRNA modification GTPase trmE [Cytophaga hutchinsonii ATCC 33406]
          Length = 460

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 154/450 (34%), Positives = 241/450 (53%), Gaps = 19/450 (4%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP--FPRKASLRYFFGLDGRILDKGL 65
           I A+++     AI +IRLSGP  F +   +   K     P           +GRILD+ +
Sbjct: 13  IVALASPQGIGAIGVIRLSGPQAFDITSSVFPSKNIAAVPTHTVHVGNIEDEGRILDEVV 72

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           + VF  P+SFT ED  E   HG   +V  +L+ L +    R A PGEF+ RAF NG+ DL
Sbjct: 73  VTVFKGPKSFTKEDVVEISCHGSTFIVKELLQLLLR-KGARHAKPGEFTMRAFLNGRFDL 131

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLISS++    +++++ M G  S    +  ++L H  S +E +LDFSE EDV+
Sbjct: 132 AQAEAVADLISSDSHASHQVALQQMRGGFSDEIRKLREQLIHFASMVELELDFSE-EDVE 190

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                ++   I  +K  I   I    LG +I+NG   VI+G  NAGKS+L N L  ++ A
Sbjct: 191 FADRTQLRKLIHEIKRVIDRLIHSFSLGNVIKNGVPTVIIGKPNAGKSTLLNTLLNEEKA 250

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++I GTTRD +  +L++EG   +  DTAG+RE  D +E  G+KRT  ++  A L++ L
Sbjct: 251 IVSEIAGTTRDFIEDELNVEGITFRFIDTAGLREATDAIEAMGVKRTREKMTQASLVIYL 310

Query: 306 KEINSKKEISFPKN--------IDFIFIGTKSD------LYSTYTEEYDHLISSFTGEGL 351
            ++ S  E    ++          F+ +G K D      + +    +    IS+    G+
Sbjct: 311 FDVKSTSERELIRDLEELKALKAPFLVVGNKIDKREDAIITTFRNIDGIIYISAKQNIGI 370

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLR 410
           EEL   +  I+  +  K   ++ ++ RH   L +T + L+      +     D++A+++R
Sbjct: 371 EELKQNLLEIIQYESFKQNDTLVTNMRHYESLRETRKALDEVLTGMDSQVPGDLLAQDIR 430

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   LG+ITG +  + LLD IFSKFCIGK
Sbjct: 431 QSLFHLGEITGDISTDDLLDNIFSKFCIGK 460


>gi|301311540|ref|ZP_07217467.1| tRNA modification GTPase TrmE [Bacteroides sp. 20_3]
 gi|300830626|gb|EFK61269.1| tRNA modification GTPase TrmE [Bacteroides sp. 20_3]
          Length = 461

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 151/460 (32%), Positives = 237/460 (51%), Gaps = 27/460 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-------LRYFFGLDGR 59
           TI A+ST      I++IR+SGP  F++C+ I + KK     ++            G +  
Sbjct: 3   TICAISTAPGVGGIAVIRVSGPDAFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  VF +P SFTGED+ E   HG   +   IL+ L      R+A PGE+++RAF 
Sbjct: 63  TIDEVIAAVFRAPHSFTGEDTVEITCHGSTYIQQQILQSLI-SSGCRIAQPGEYTQRAFM 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S +  Q RL++  M G  S    +  ++L H  S +E +LDFS
Sbjct: 122 NGKMDLSQAEAVADLIASTSAGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + E+++     E+      ++  IS       +G  I+NG  + I+G +NAGKS+L NAL
Sbjct: 182 DHEELEFADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIV+DI GTTRDV+   +++ G L +  DTAGIRET D +E  GI+R+F  ++ A
Sbjct: 242 LNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETSDTIEALGIERSFKALDQA 301

Query: 300 DLILLLKEINSK--------KEIS-FPKNIDFIFIGTKSDL--------YSTYTEEYDHL 342
            +++L+ ++           +EI+    N   I    K D+        +S  TE +  +
Sbjct: 302 QIVILMYDLTRDLKDFEAFYQEIAPRLTNKSVILAMNKCDVLPTSSLPTFSFPTEGWHQI 361

Query: 343 ISSFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DC 400
             S  G+  + EL   +  + S         I ++ RH   L+  +  +           
Sbjct: 362 AISAKGKLHIAELQQLLTEVSSIPTLHQSDIIVTNARHFEALTHALEAIHRVQEGLNSSL 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D I+++LR     L  I G V  +Q+L  IF  FCIGK
Sbjct: 422 SGDFISQDLRECIFHLSDIVGEVTTDQVLGNIFQHFCIGK 461


>gi|300313619|ref|YP_003777711.1| tRNA modification (thiophene/furan oxidation) GTPase
           [Herbaspirillum seropedicae SmR1]
 gi|300076404|gb|ADJ65803.1| tRNA modification (thiophene/furan oxidation) GTPase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 479

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/468 (34%), Positives = 240/468 (51%), Gaps = 30/468 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M  +   I A++T      I ++RLSG +   V + +C +    PR A+   F   DG  
Sbjct: 14  MTFDSSPIAAIATAPGRGGIGVVRLSGKNLAPVIQAVCGRASLAPRHATYLPFLNEDGSA 73

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRA 117
           +D+GL I FP+P S+TGED  E   HGG  V+  +L    +      LRLA PGEF++RA
Sbjct: 74  IDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGEFTQRA 133

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N KIDL +AE++ADLI + TE   + + E +SG  S +  + +D++T +R  +EA LD
Sbjct: 134 FLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLVEATLD 193

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E E++      +    +  +++ +         G ++R+G   V+ G  N GKSSL N
Sbjct: 194 FPE-EEIDFLKQSDARGQLATIRSTLEEVFKHAAQGALLRDGLNAVLAGKPNVGKSSLLN 252

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET------DDIVEKEGIKR 291
            LA  DVAIVT I GTTRD +T  + +EG  + I DTAGIRE        D VE+ GI+R
Sbjct: 253 VLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDDGSGPDEVERIGIER 312

Query: 292 TFLEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSD------LYSTYTEE 338
           T+ EV  AD+IL + + +    +        FP  +  I I  K D            + 
Sbjct: 313 TWAEVAKADVILHMLDADRGPTLEDEKITSRFPDGVPIIRIWNKIDRSGHKAAVDKMPDA 372

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL--- 395
               +S+  G+G++ L  ++  I   + + +     + +RHL  L     +L  A+    
Sbjct: 373 THVYLSASEGQGVDLLRAELLRIAGWQ-QTVESRYLARERHLLALKAADEHLAHAAAHAA 431

Query: 396 ---NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 +  LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 432 LDNEAGEHALDLFAEELRLAQERLSSITGKFTPDDLLGVIFSRFCIGK 479


>gi|86130381|ref|ZP_01048981.1| tRNA modification GTPase, ThdF family [Dokdonia donghaensis MED134]
 gi|85819056|gb|EAQ40215.1| tRNA modification GTPase, ThdF family [Dokdonia donghaensis MED134]
          Length = 462

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 152/461 (32%), Positives = 245/461 (53%), Gaps = 27/461 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR- 59
           ++TI A+++ A   AI++IR+SGP    +C  I K    K     +  ++     +DG+ 
Sbjct: 4   QDTIVALASPAGAGAIAVIRVSGPESLAICSPIFKSVSGKVLANQKTHTIHLGHIMDGQR 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ L+ +F    S+TGE + E   HG   +   I++ L +    R A  GEF+ R+F 
Sbjct: 64  TIDEVLVSLFKGTNSYTGEPTVEISCHGSSYIQQEIIQLLLRS-GCRAAKAGEFTLRSFI 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S+ E   +++M+ M G  S+   Q   +L +  S IE +LDFS
Sbjct: 123 NGKMDLSQAEAVADLIASDNEGAHQIAMQQMRGGFSNEIAQLRQELLNFASLIELELDFS 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV+     +  + I  +   +   I     G +I+NG  + I+G  N GKS+L NAL
Sbjct: 183 E-EDVEFADRTQFKDLIARITKVLKRLIDSFATGNVIKNGIPVAIVGEPNVGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DI GTTRD +  +L + G   +  DTAGIRET+D++E  GIK+TF +++ A
Sbjct: 242 LNEERAIVSDIAGTTRDTIEDELSIGGIGFRFIDTAGIRETEDVIEGLGIKKTFEKIKQA 301

Query: 300 DLILLLKEINS--------KKEISFPKNI----DFIFIGTKSD-LYSTYTEEYD------ 340
            +++LL   +         K EI   KN       + +  K D L  T   E        
Sbjct: 302 QVVVLLHTASEVIHQTASVKLEIEKIKNQFPLKPLLVVANKIDALSPTELNEIATKIDNL 361

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-D 399
           HL+S+   +G++ L NK+   ++    +   +I ++ RH   L + +  +E         
Sbjct: 362 HLLSAKENQGVDALKNKLLDFVNTGALRNDETIVTNSRHYDALLKALEEIEKVQYGLDTG 421

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D++A ++R A    G+ITG V  ++LL  IF+ FCIGK
Sbjct: 422 LSGDLMAIDIREALYHFGEITGQVTNDELLGNIFANFCIGK 462


>gi|291539801|emb|CBL12912.1| tRNA modification GTPase trmE [Roseburia intestinalis XB6B4]
          Length = 457

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 147/456 (32%), Positives = 234/456 (51%), Gaps = 23/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDG-RI 60
           +TI A++T    S I IIR+SG     + + I      KK       ++ Y    DG  +
Sbjct: 4   DTIAAIATAMSSSGIGIIRISGDEAVGIVDRIFSMKNGKKLSDMPTHTIHYGHIKDGDEV 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ ++++  +P+S+T ED+ E   HGG+ V+  +LE + K    R A PGEF++RAF N
Sbjct: 64  IDEVMVVLMRAPKSYTKEDTVEIDCHGGVYVMKRVLETVIK-YGARPAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ D+I ++ E   + S + +SG LS+   +  +KL H  +FIE+ LD  E
Sbjct: 123 GRIDLAQAESVIDIIHAKNEFALKSSEQQLSGSLSAAVRKVREKLLHEIAFIESALDDPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              +  +  + +   +   + +I   ++    G+I++ G   VI+G  NAGKSSL N L 
Sbjct: 183 HISLDGYP-ETLHGIVEEAQKEIQKLLANSDNGKILKEGISTVIIGKPNAGKSSLLNTLV 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   ++L G ++ + DTAGIRETDD+VEK G+ R    +  AD
Sbjct: 242 GEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDVVEKIGVDRAKKYLNEAD 301

Query: 301 LILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--------SSF 346
           L + + + +++ +      +   K+   I +  KSDL      E             S+ 
Sbjct: 302 LAIYVVDTSTQLDENDFEIMELLKDRKAIVLLNKSDLTPVTDSESIRKHLDKKMIAISAK 361

Query: 347 TGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDCGLDI 404
              G+EEL   I+ +    +         ++ RH   L +    L +           D 
Sbjct: 362 EQTGIEELEETIREMFFTGEVTFNDEVYITNIRHKTALQEARNSLNLVVQSILDGMPEDF 421

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +L  A   LG I G    + L++ IFSKFC+GK
Sbjct: 422 YSIDLMNAYEELGSIVGEAVEDDLVNEIFSKFCMGK 457


>gi|261856983|ref|YP_003264266.1| tRNA modification GTPase TrmE [Halothiobacillus neapolitanus c2]
 gi|261837452|gb|ACX97219.1| tRNA modification GTPase TrmE [Halothiobacillus neapolitanus c2]
          Length = 448

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/453 (36%), Positives = 250/453 (55%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGR 59
           M+   +TI A++T      + IIRLSG     + E I     P  R A    F     G 
Sbjct: 1   MHSPHDTIAAIATAPGRGGVGIIRLSGTQAHAIAERIVSTLPPI-RYARHVPFKHPNTGA 59

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D GL +VF +P S+TGED  E   HGG  V++ +L+ L      RLA PGEF+ RAF 
Sbjct: 60  LIDDGLCLVFSAPHSYTGEDVVELQGHGGPVVLDHLLK-LILQQGARLARPGEFTERAFL 118

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++ADLI + ++   + + + + G  S    +   +L  +R FIE+ LDF 
Sbjct: 119 NGRMDLAQAEAVADLIDAGSQAAAQAASQALQGVFSERVHRVTQQLIALRMFIESALDFP 178

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E E++   S   ++     L ++I+  +S+ + G ++R G ++ I+G  NAGKSSL N L
Sbjct: 179 E-EEIDFLSDARLITQSQQLVDEIAELLSETQQGVLLREGMRVAIVGQPNAGKSSLLNQL 237

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A  D AIVTDIPGTTRDVL  ++ ++G  V I DTAG+RE+D+ +E+EGI+R + EVE A
Sbjct: 238 AGDDRAIVTDIPGTTRDVLRAEIQIDGLPVHIIDTAGLRESDEPIEREGIRRAWREVEQA 297

Query: 300 DLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL---YSTYTEEYDH-LISSFTG 348
           D +L L++        + K     P+      +  K DL    + + +E  H  IS+ TG
Sbjct: 298 DAVLFLQDDHRNNPDEDEKIRAMLPRKHTIW-VFNKIDLSGRPAGFDQEKIHLGISAKTG 356

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAE 407
            G++EL   +K I+  +  +      + +RHL  L    + +  A S        ++ AE
Sbjct: 357 AGIKELRAHLKEIMGYQSTEGGQ-FIARRRHLDALLGAQKEIISAHSALTTQSAGELAAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LR A ++L +ITG    + LL  IFS FCIGK
Sbjct: 416 SLRRAQLALDEITGKFTADDLLGEIFSNFCIGK 448


>gi|120436262|ref|YP_861948.1| tRNA modification GTPase TrmE [Gramella forsetii KT0803]
 gi|205829153|sp|A0M2N6|MNME_GRAFK RecName: Full=tRNA modification GTPase mnmE
 gi|117578412|emb|CAL66881.1| tRNA modification GTPase [Gramella forsetii KT0803]
          Length = 474

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 147/473 (31%), Positives = 245/473 (51%), Gaps = 39/473 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG--LDGR- 59
            +TI A++T +   AI+IIR+SGP   ++   + K   KK   ++ +     G  +DG  
Sbjct: 4   NDTIVALATPSGAGAIAIIRVSGPDALEIVAPLFKAKSKKDLAKQPTHTLHLGNVMDGER 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ L  VF +P+S+TGE++ E   HG   +   I++ L +    R A  GEF+ RAF 
Sbjct: 64  TIDEVLASVFRAPKSYTGEETVELSCHGSPYIQQEIIQLLIRKS-CRSAEAGEFTLRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N K+DL +AE++ADLI+SE     +++M+ M G  S+   +  ++L +  S IE +LDF+
Sbjct: 123 NAKMDLSQAEAVADLINSENAASHQMAMQQMRGGFSNEIQKLREELLNFASLIELELDFA 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV+  +  +  + +  ++  +   +     G +++NG  + I+G  N GKS+L NAL
Sbjct: 183 E-EDVEFANRDQFKDLVSKIQTVLKRLLDSFATGNVLKNGIPVAIVGEPNVGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV++I GTTRD +  ++ + G   +  DTAGIRET D+VE  GIK+TF ++  A
Sbjct: 242 LNEERAIVSEIAGTTRDTIEDEMSIGGVGFRFIDTAGIRETKDVVESIGIKKTFEKISQA 301

Query: 300 DLILLLKEINS-----------KKEISFPKN----IDFIFIGTKSD---------LYSTY 335
            +++ L + +            + EI   KN       + I  K+D         L +  
Sbjct: 302 QVVVYLVDSSQIAVNRERLQQVRIEIEKIKNKFPQKPLLIIANKTDRLADEEIHNLKTKL 361

Query: 336 TEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            E   H         S+ T  G+EEL  K+   ++    +   +I ++ RH   L + + 
Sbjct: 362 EEISSHAERAQFLLLSAKTNLGVEELKEKLLEYVNTGALRNSDTIVTNSRHYAALLKALE 421

Query: 389 YLEMASLNEK-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +         D   D++A ++R A    G+ITG +  + LL  IF+ FCIGK
Sbjct: 422 EINKVEEGLNADLSGDLLAIDIRQALHHFGEITGEITNDDLLGNIFANFCIGK 474


>gi|91974909|ref|YP_567568.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris BisB5]
 gi|91681365|gb|ABE37667.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris BisB5]
          Length = 462

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 173/464 (37%), Positives = 252/464 (54%), Gaps = 28/464 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA++TG LPSAI+++R+SGP    +   +     P PR A        +  +
Sbjct: 3   MHPSDQTIFALATGQLPSAIAMVRVSGPRAGDLLTALTGS-LPPPRTARRVLIRDQNQDL 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F  P S TGED AEFH+HGG AV+  ++  L+    +R A PGEF+RRAFEN
Sbjct: 62  IDDGVALWFAGPASATGEDVAEFHIHGGRAVLAALVRALSAFDGVRPAEPGEFTRRAFEN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++TE QRR ++  + G L     +W  ++    + IEA +DF++
Sbjct: 122 GKLDLTEAEGLDDLIHADTEAQRRQAVRQLGGLLGDRARRWRAQIIEATALIEAGIDFAD 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DVQ       L  I  L ++I+  ++     E +R+G  + I G  N GKS+L N LA
Sbjct: 182 EGDVQGELMAPALQTIAALHDEIAEVLAAQGRSERLRDGMVVAIAGPPNVGKSTLINRLA 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRDV+ + LDL GY V + DTAGIRE++D VE+EG++R       AD
Sbjct: 242 RREVAIVSPHAGTTRDVIEVQLDLGGYPVTVIDTAGIRESNDPVEQEGVRRARARAAEAD 301

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYS------------------------TYT 336
           L+L L E     + +   +     +  K DL                           + 
Sbjct: 302 LVLWLGEGEMTGD-AVAASAPVWRVRNKIDLRGGEGDGGPVGLPVEPLAAALRQTDGAWG 360

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                 IS+  G+GL ELI  I+   +  F     ++ S  RH   L      L+ +   
Sbjct: 361 GNAAFEISALRGQGLGELIAAIEDFAAQYFASGETALISRARHRTLLQDAAAMLQRSL-- 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + D   +++AE LRLA V+LG++ G VDVE +L  IFS+FCIGK
Sbjct: 419 QHDLPAELVAEELRLAGVALGRLLGRVDVEDVLGEIFSRFCIGK 462


>gi|205422245|sp|Q13E22|MNME_RHOPS RecName: Full=tRNA modification GTPase mnmE
          Length = 460

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 173/464 (37%), Positives = 252/464 (54%), Gaps = 28/464 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA++TG LPSAI+++R+SGP    +   +     P PR A        +  +
Sbjct: 1   MHPSDQTIFALATGQLPSAIAMVRVSGPRAGDLLTALTGS-LPPPRTARRVLIRDQNQDL 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F  P S TGED AEFH+HGG AV+  ++  L+    +R A PGEF+RRAFEN
Sbjct: 60  IDDGVALWFAGPASATGEDVAEFHIHGGRAVLAALVRALSAFDGVRPAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++TE QRR ++  + G L     +W  ++    + IEA +DF++
Sbjct: 120 GKLDLTEAEGLDDLIHADTEAQRRQAVRQLGGLLGDRARRWRAQIIEATALIEAGIDFAD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DVQ       L  I  L ++I+  ++     E +R+G  + I G  N GKS+L N LA
Sbjct: 180 EGDVQGELMAPALQTIAALHDEIAEVLAAQGRSERLRDGMVVAIAGPPNVGKSTLINRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRDV+ + LDL GY V + DTAGIRE++D VE+EG++R       AD
Sbjct: 240 RREVAIVSPHAGTTRDVIEVQLDLGGYPVTVIDTAGIRESNDPVEQEGVRRARARAAEAD 299

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYS------------------------TYT 336
           L+L L E     + +   +     +  K DL                           + 
Sbjct: 300 LVLWLGEGEMTGD-AVAASAPVWRVRNKIDLRGGEGDGGPVGLPVEPLAAALRQTDGAWG 358

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                 IS+  G+GL ELI  I+   +  F     ++ S  RH   L      L+ +   
Sbjct: 359 GNAAFEISALRGQGLGELIAAIEDFAAQYFASGETALISRARHRTLLQDAAAMLQRSL-- 416

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + D   +++AE LRLA V+LG++ G VDVE +L  IFS+FCIGK
Sbjct: 417 QHDLPAELVAEELRLAGVALGRLLGRVDVEDVLGEIFSRFCIGK 460


>gi|67922416|ref|ZP_00515927.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Crocosphaera watsonii WH 8501]
 gi|67855760|gb|EAM51008.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Crocosphaera watsonii WH 8501]
          Length = 460

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 152/461 (32%), Positives = 243/461 (52%), Gaps = 25/461 (5%)

Query: 1   MNHEKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-- 56
           +  + ETI A++T       +I IIRLSG     + + +       P+  S    +G   
Sbjct: 4   IITQGETIAAIATAIVPQQGSIGIIRLSGNKALSIAKTLF-IAPGNPKWQSHSILYGYIR 62

Query: 57  ---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
                +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+   +     LA PGEF
Sbjct: 63  HPQSQQVIDEALLLIMLAPRSYTREDVIEFHCHGGIMPVQQVLQLCIE-QGATLAQPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           + RAF NG+IDL +AES+++L+ + ++   ++++ G+ G+L+    +       I + IE
Sbjct: 122 TLRAFLNGRIDLTQAESISELVGARSQQASQMALAGLQGKLAQPLQKLRHHCLDILAEIE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF E  D+     K +   +  +   + + ++  + GE++RNG K+ I+G  N GKS
Sbjct: 182 ARIDFEE--DLPPLDKKAISQGLETILEQVQTILNTAERGELLRNGLKVAIVGRPNVGKS 239

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NA ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIR+T D VEK G++R+ 
Sbjct: 240 SLLNAWSRSDRAIVTDLPGTTRDVIESQLVVGGIPIQVLDTAGIRQTTDQVEKIGVERSQ 299

Query: 294 LEVENADLILLLKEI-----NSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEYD------H 341
           L    ADL+LL  +      N   EI    ++   I +  K DL +    ++        
Sbjct: 300 LAASQADLVLLTVDATVVWSNQDNEIYQAIEHRPVILVINKIDLATPDLAQFPTQISEIV 359

Query: 342 LISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKD 399
             S+   +G+E L   I K+I  +K          ++R    L++    LE      +++
Sbjct: 360 KTSAANNQGIEALETAILKAIHQDKLTASNLDFAINQRQSAALTRAKISLEQVQTTIKEE 419

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 420 LPLDFWTIDLRSAIQALGEITGEEITESVLDRIFSRFCIGK 460


>gi|126657505|ref|ZP_01728661.1| tRNA modification GTPase [Cyanothece sp. CCY0110]
 gi|126621209|gb|EAZ91922.1| tRNA modification GTPase [Cyanothece sp. CCY0110]
          Length = 460

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/460 (33%), Positives = 243/460 (52%), Gaps = 23/460 (5%)

Query: 1   MNHEKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYF-F 54
           M  + ETI A++T       +I IIRLSG +   + + +     K+K    +    Y   
Sbjct: 4   MITQGETIAAIATAIVPQQGSIGIIRLSGNNALNIAQTLFIAPGKQKWESHRILYGYIRH 63

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               ++LD+ LL++  +P S+T ED  EFH HGGI  V  +L+ L       LA PGEF+
Sbjct: 64  PQTEQVLDEALLLMMLAPRSYTREDVIEFHCHGGIMPVQQVLQ-LCLEQGAILAQPGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF NG+IDL +AES+++L+S+ ++   ++++ G+ G+L+    +       I + IEA
Sbjct: 123 LRAFLNGRIDLTQAESISELVSARSQQASQMALAGLQGKLAQPIQKLRHHCLDILAEIEA 182

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF +  D+     K +   +  +   + S +   + GE++RNG K+ I+G  N GKSS
Sbjct: 183 RIDFED--DLPPLDKKAISQGLEEILEQVESILKTAEQGELLRNGLKVAIVGRPNVGKSS 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NA ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIR+T D VEK G++R+ L
Sbjct: 241 LLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRQTTDQVEKIGVERSRL 300

Query: 295 EVENADLILLLKEIN-----SKKEISFP-KNIDFIFIGTKSDLYSTYTEEYD------HL 342
               ADL+LL  +          EI  P +++  I +  K DL +    ++         
Sbjct: 301 AASQADLVLLTIDATVGWTVEDSEIYQPIRHLPTILVINKIDLATPDLSQFPPEIKGIVK 360

Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDC 400
            S+   +G+E L + I   I   K          ++R    L+++   L+   +   +D 
Sbjct: 361 TSAANHQGIEALESTILQGINQQKLTANNLDFAINQRQAAALTRSKIALQQVQITITEDL 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD    +LR A   LG+ITG    E +LD IFS+FCIGK
Sbjct: 421 PLDFWTIDLRSAIQVLGEITGEEITESVLDKIFSRFCIGK 460


>gi|262383614|ref|ZP_06076750.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_33B]
 gi|262294512|gb|EEY82444.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_33B]
          Length = 461

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 150/460 (32%), Positives = 237/460 (51%), Gaps = 27/460 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-------LRYFFGLDGR 59
           TI A+ST      I+++R+SGP  F++C+ I + KK     ++            G +  
Sbjct: 3   TICAISTAPGVGGIAVVRVSGPDAFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  VF +P SFTGED+ E   HG   +   IL+ L      R+A PGE+++RAF 
Sbjct: 63  TIDEVIAAVFRAPHSFTGEDTVEITCHGSTYIQQQILQSLI-SSGCRIAQPGEYTQRAFM 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S +  Q RL++  M G  S    +  ++L H  S +E +LDFS
Sbjct: 122 NGKMDLSQAEAVADLIASTSAGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + E+++     E+      ++  IS       +G  I+NG  + I+G +NAGKS+L NAL
Sbjct: 182 DHEELEFADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIV+DI GTTRDV+   +++ G L +  DTAGIRET D +E  GI+R+F  ++ A
Sbjct: 242 LNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETSDTIEALGIERSFKALDQA 301

Query: 300 DLILLLKEINSK--------KEIS-FPKNIDFIFIGTKSDL--------YSTYTEEYDHL 342
            +++L+ ++           +EI+    N   I    K D+        +S  TE +  +
Sbjct: 302 QIVILMYDLTRDLKDFEAFYQEIAPRLTNKSVILAMNKCDVLPASSLPTFSFPTEGWHQI 361

Query: 343 ISSFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DC 400
             S  G+  + EL   +  + S         I ++ RH   L+  +  +           
Sbjct: 362 AISAKGKLHIAELQQLLTEVSSIPTLHQSDIIVTNARHFEALTHALEAIHRVQEGLNSSL 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D I+++LR     L  I G V  +Q+L  IF  FCIGK
Sbjct: 422 SGDFISQDLRECIFHLSDIVGEVTTDQVLGNIFRHFCIGK 461


>gi|300024783|ref|YP_003757394.1| tRNA modification GTPase TrmE [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526604|gb|ADJ25073.1| tRNA modification GTPase TrmE [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 444

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 184/435 (42%), Positives = 256/435 (58%), Gaps = 4/435 (0%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGL 65
           TIFA+S+    +A+S+IR+SGP+   V E +     P PR A+ R     D G  LD+ +
Sbjct: 13  TIFALSSAPGRAALSVIRISGPAVRNVLETMTAP-VPKPRVAAFRTIRHPDTGEALDRAV 71

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +P S TGED AEF  HG  A V  IL  L  +   RLA PGEF+RR FENGK+DL
Sbjct: 72  VLWFAAPNSETGEDVAEFQGHGSRAAVAAILGALGTVKGCRLAEPGEFARRGFENGKMDL 131

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E L DLI +ETE QRR ++   SG LS LY  W  +L  I +  EA +DFS+E DV 
Sbjct: 132 AEIEGLGDLIEAETEAQRRQALAQSSGTLSKLYESWRTRLIEIAALTEAAIDFSDEGDVS 191

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S  +       L  +I +H+  G  GEI+R+G+++ +LG  NAGKSSL NALAK+D A
Sbjct: 192 ASSFADARKRADALSAEIGAHLDDGHRGEIVRDGFRVALLGAPNAGKSSLLNALAKRDAA 251

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++  GTTRDV+ + LDL G  V +SDTAGIRE + +VE+EGI+R+     +ADL++ L
Sbjct: 252 IVSEEAGTTRDVIEVRLDLAGLPVVVSDTAGIREAESLVEQEGIRRSLAAARDADLVVWL 311

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E               + I +K+DL    T +    +S+ TGEGL+ L+ +I    S  
Sbjct: 312 SEAGDSTPPEPISRETSLAIRSKADLCRESTADL-LAVSAVTGEGLDRLVAEIARRASEA 370

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425
                    +  RH   L      ++ A LN     +++ AE++R A+ ++G+ITG VDV
Sbjct: 371 VGTRTDPALTRVRHRQSLEAARDEIQ-AFLNGDSGAVELRAEDVRRAAHAIGRITGRVDV 429

Query: 426 EQLLDIIFSKFCIGK 440
           E +LD +FS+FCIGK
Sbjct: 430 EDVLDQVFSRFCIGK 444


>gi|239624142|ref|ZP_04667173.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520528|gb|EEQ60394.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 459

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 151/458 (32%), Positives = 241/458 (52%), Gaps = 25/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------PFPRKASLRYFFGLDG- 58
           +TI A++TG   S I I+R+SG   F V + + + K          R  ++ Y F  DG 
Sbjct: 4   DTIAAIATGMGNSGIGIVRISGDEAFTVIDKLYRNKDGRQVPISQARSHTVHYGFIYDGD 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+++   P S+T ED+ E   HGGI +V  ILE +      R A PGEF++RAF
Sbjct: 64  EKVDEALVLIMKGPHSYTAEDTVEIDCHGGILMVRKILEAVI-HAGARTAEPGEFTKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++AD+I++  E   + S+  +SG +S    +   ++ +  +FIE+ LD 
Sbjct: 123 LNGRIDLSQAEAVADVINATNEYALKSSVSQLSGSVSKRIKELRSQILYQIAFIESALDD 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E   +  +  +E+L  +  +  ++   ++    G ++  G K VILG  NAGKSSL N 
Sbjct: 183 PEHISLDGYD-EELLARLDPMVEEVKRLLASADDGRVMTEGVKTVILGKPNAGKSSLMNV 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVT+I GTTRD L   + L+G  + + DTAGIR+T+D+VEK G+ R      +
Sbjct: 242 LLGEERAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDVVEKIGVDRARRAAGD 301

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLIS 344
           ADLI+ + +       + ++ + F +    I +  KSDL     +E            +S
Sbjct: 302 ADLIIFVVDGSRPLDESDREIMDFIRGRKSIILLNKSDLELVVGKEELEGMSGQKVIPVS 361

Query: 345 SFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGL 402
           +   +G+EEL  +IK +  +   K       ++ RH   L Q +R L M     E     
Sbjct: 362 AKEEQGIEELEQEIKRLFYHGELKFNDQVYITNVRHKEALEQALRSLLMVKGSIEDRMPE 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  + +L  A   LG ITG    + L++ IF++FC+GK
Sbjct: 422 DFYSIDLMNAYEQLGLITGEAVDDDLVNEIFARFCMGK 459


>gi|325288104|ref|YP_004263894.1| tRNA modification GTPase mnmE [Cellulophaga lytica DSM 7489]
 gi|324323558|gb|ADY31023.1| tRNA modification GTPase mnmE [Cellulophaga lytica DSM 7489]
          Length = 478

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 156/461 (33%), Positives = 249/461 (54%), Gaps = 27/461 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDG-R 59
           ++TI A++T +   AI++IRLSGP    +     K    K     +  ++     +DG +
Sbjct: 20  QDTIVALATPSGAGAIAVIRLSGPDAITLANAKFKSVRNKDLTKQKTHTIHLGHIVDGTK 79

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           + D+ L+ +F  P S+TGE+  E   HG   +   I  +L      R+A+ GEF+ RAF 
Sbjct: 80  VYDEVLVSLFKGPNSYTGENVIEISCHGSQYIQQQI-IQLFLRNGCRMADAGEFTLRAFL 138

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S+ E   +++M+ M G  SS   +  ++L +  S IE +LDF+
Sbjct: 139 NGKLDLSQAEAVADLIASDNEASHQIAMQQMRGGFSSEIKKLREELLNFASLIELELDFA 198

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV+     + +  +  ++  +   I    +G +++NG  + I+G  N GKS+L NA 
Sbjct: 199 E-EDVEFADRTQFITLLSRIQEVLKRLIDSFAVGNVLKNGIPVAIVGEPNVGKSTLLNAF 257

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIV+DI GTTRD +  ++ + G   +  DTAGIRET D+VE  GIK+TF ++E A
Sbjct: 258 LNEDRAIVSDIAGTTRDTIEDEIAIGGIGFRFIDTAGIRETTDVVESIGIKKTFEKIEQA 317

Query: 300 DLILLLKEINS--------KKEISFPKNI----DFIFIGTKSDLYSTYTEEYDH------ 341
            ++L L  +          K EI   KN       + I  K DLY+    E         
Sbjct: 318 QVVLYLSPLTPAIENLESIKVEIERIKNQFPLKTLVVITNKKDLYTPEQIETIEAEIPST 377

Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
             IS+ TG+G+E L NK+   ++    +   +I ++ RH   L +++  +E   L  +  
Sbjct: 378 LFISAKTGDGVETLKNKLLEFVNTGALRNNETIVTNTRHFDALLKSLEGIERVQLGMDGG 437

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D++A +L+ A   LG+ITG V  ++LL  IF+ FCIGK
Sbjct: 438 ISGDLLAIDLKDALYHLGEITGQVSNDELLGNIFANFCIGK 478


>gi|237654729|ref|YP_002891043.1| tRNA modification GTPase TrmE [Thauera sp. MZ1T]
 gi|237625976|gb|ACR02666.1| tRNA modification GTPase TrmE [Thauera sp. MZ1T]
          Length = 448

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 160/445 (35%), Positives = 243/445 (54%), Gaps = 16/445 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      I ++R+SG         +C +  P PR A    F     R +D+G+
Sbjct: 10  DTIAAIATAPGRGGIGVVRVSGAGLGAFALALCGR-TPQPRIAHFTRFLDEHERPIDEGI 68

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+ F +P SFTGED  E   HGG  V+  +LE   ++   RLA PGEF+RRAF NGK+DL
Sbjct: 69  LLYFAAPASFTGEDVLELQGHGGPVVMQMLLERCLQL-GARLAEPGEFTRRAFLNGKLDL 127

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE +ADLI + T    R ++  +SG+ S    + +D L  +R  +EA LDF E E++ 
Sbjct: 128 AQAEGVADLIEASTAAAARSAVRSLSGQFSEEVHRIVDALIDLRMLVEATLDFPE-EEID 186

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                  +  +  ++  +   + + + G ++R+G  +V++G  N GKSSL N LA ++ A
Sbjct: 187 FLERARAMPRLESIREALEGVLDRARQGALLRSGLDVVLVGAPNVGKSSLLNQLAGEERA 246

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRD L   + +EG  + I DTAG+RET+D VE+ GI+RT+ E+  AD+IL L
Sbjct: 247 IVTDIAGTTRDALRETIQVEGIPLHIIDTAGLRETEDRVERIGIERTWREIARADVILHL 306

Query: 306 KE----INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLEELI 355
            E         +   P+ ++ I +  K DL        +        +S+ +GEG+E + 
Sbjct: 307 VEAGVAAEGDLDERLPQGVERIMVANKIDLAGLPAGRVEAGGRVRLQVSARSGEGVELVR 366

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
            ++  I           I + +RHL  L + +R++E A        L++ AE LRLA   
Sbjct: 367 QELLRIA-GWHAHGEDVILARERHLLALREALRHVEAAGTQLG--ALELFAEELRLAQEE 423

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG ITG    + LL +IF++FCIGK
Sbjct: 424 LGTITGEFSADDLLGVIFARFCIGK 448


>gi|158321890|ref|YP_001514397.1| tRNA modification GTPase TrmE [Alkaliphilus oremlandii OhILAs]
 gi|166988168|sp|A8MKR9|MNME_ALKOO RecName: Full=tRNA modification GTPase mnmE
 gi|158142089|gb|ABW20401.1| tRNA modification GTPase TrmE [Alkaliphilus oremlandii OhILAs]
          Length = 461

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 146/460 (31%), Positives = 245/460 (53%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK------KPFPRKASLRYFFGLDG 58
            +TI A++T    + I I+R+SG    ++ + I K K      +   R+ +  +      
Sbjct: 4   DDTIAAIATAPGEAGIGIVRISGEKAIELIDKIFKSKDHKVLSQYKSRRITYGHIIDPKT 63

Query: 59  R-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ L+     P ++T ED  E + HGG+  V  ILE L      R+A PGEF++RA
Sbjct: 64  EKVVDEVLVSYMKGPNTYTREDIVEINCHGGMIPVKNILE-LVLRVGARMAEPGEFTKRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLIS++TE    +++  + G LS    +  +KL  + + +E  +D
Sbjct: 123 FLNGRIDLAQAEAIMDLISAKTEKGFDVALSQLEGSLSKKVAKVREKLLDMLAHVEVSID 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F+E +DV   +   +LN  L ++ DI   +     G+IIR G   VI+G  N GKSSL N
Sbjct: 183 FAE-DDVDEVALDYLLNKSLEVEGDIQKLLDTADTGKIIREGLSTVIVGKPNVGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL ++  AIVTD+PGTTRD++   L+++G  +++ DTAGIR+T+DIVEK G++R+     
Sbjct: 242 ALVRESRAIVTDVPGTTRDIIEEHLNIKGIPLRLIDTAGIRDTEDIVEKIGVERSKELFN 301

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHL 342
            ADLI+++ + +        + I   +N   + I  K+DL              ++    
Sbjct: 302 LADLIIVMLDASRELTEEDLRIIELIENKRALVIINKTDLQQKLNLTPIQEIIQDKKIIK 361

Query: 343 ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDC 400
           +S     GLEE+ + +  ++     K     + ++ RH   L + +   ++     E+  
Sbjct: 362 VSLIEEIGLEEIEDALAEMVYKGGAKAKDSLLVTNVRHKNALERALDSIIDGTKAIEQKL 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD +  +++ +  +LG+ITG    E ++D IF  FCIGK
Sbjct: 422 PLDFVEVDIKNSWKALGEITGDTVEEDIIDHIFKNFCIGK 461


>gi|56965874|ref|YP_177608.1| tRNA modification GTPase TrmE [Bacillus clausii KSM-K16]
 gi|81821939|sp|Q5WAG3|MNME_BACSK RecName: Full=tRNA modification GTPase mnmE
 gi|56912120|dbj|BAD66648.1| tRNA modification GTPase [Bacillus clausii KSM-K16]
          Length = 458

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 146/459 (31%), Positives = 241/459 (52%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI I+RLSG     + + + K  K      S    +G        
Sbjct: 2   EMDTIAAISTALGEGAIGIVRLSGDQAIAIGDKLFKGTKRLEDTPSHTIVYGHLMDDASE 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +++ ++ V  +P ++T ED  E + HGG+  VN +L+ +      RLA PGEF++RAF
Sbjct: 62  EAIEEAMVTVMRAPRTYTREDIVEINCHGGLVSVNRVLQAVL-AKGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE + DLI S+T+    +++  + G LS   G+    L    + IE ++D+
Sbjct: 121 LNGRIDLSQAEGVIDLIRSKTDRAMNVALRQVEGRLSKKIGKLRQALLETIASIEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D +  ++K +   +  +  +I + ++  K G+++R G    I+G  N GKSSL N+
Sbjct: 181 PEY-DAETMTAKLINEKMTIVLAEIEALLATAKQGKVLREGLATAIIGRPNVGKSSLMNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +  AIVTDIPGTTRD L   +++ G  +++ DTAGIRET+DIVE+ G++R+   ++ 
Sbjct: 240 LVHEAKAIVTDIPGTTRDTLEEYVNVRGVPLRLIDTAGIRETEDIVERIGVERSRQALKE 299

Query: 299 ADLILLLK----EINSKKEISFP--KNIDFIFIGTKSD---------LYSTYTEEYDHLI 343
           ADLILL+     +++ + E  F   K +D + I  K D         +     E      
Sbjct: 300 ADLILLVLNYAEKLSKEDEALFEAVKGLDVVVIVNKIDQTGRIDMERVRQLAGENPVVAT 359

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S    EG+++L   I  +      +    +  S+ RH+  L+Q   + E A + +  D  
Sbjct: 360 SFLQEEGVDQLEEAISRLFFAGGVEGADLTYVSNARHIGLLNQAKAHAEEAIAASLTDVP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D+I  ++      LG+I G    + L+D +FS+FC+GK
Sbjct: 420 VDLIQIDVTRTWELLGEIIGEDVQDSLIDQLFSQFCLGK 458


>gi|319891293|ref|YP_004148168.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317160989|gb|ADV04532.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 460

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 147/460 (31%), Positives = 240/460 (52%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI ++ST     AI I+RLSG    ++ + + K K       +    +   G I+D   
Sbjct: 5   DTITSISTPMGEGAIGIVRLSGHDAVEIADKLYKGKHLLKDVPTHTINY---GHIIDPET 61

Query: 66  LIV--------FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             V          +P +FT ED  E + HGGI  +N +LE L      R+A PGE+++RA
Sbjct: 62  EEVVEEVMVSVLRAPRTFTREDIVEINCHGGILTINRVLE-LTMTYGARMAEPGEYTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D
Sbjct: 121 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I   +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 181 YPEYDDVEDATTEFLLERSQEIKQEIQKLLDTGVQGKIMREGLSTVIVGKPNVGKSSMLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVE+ G++R+   + 
Sbjct: 241 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRKALS 300

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHL 342
            ADLIL +   N       +K     KN D I I  K+DL              +     
Sbjct: 301 EADLILFVLNYNEPLTEDDRKLYEVIKNEDAIVIINKTDLEQRLDLAEVEAMVGDMPIIQ 360

Query: 343 ISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
            S    +G++EL  +I+ +      +    +  S+ RH+  L Q    ++ A    E   
Sbjct: 361 TSMLQQQGIDELEIQIRDLFFGGEVQSQDMTYVSNSRHISLLKQAKNAIQDAIDAAEMGV 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+I G    E+L+D +FS+FC+GK
Sbjct: 421 PMDMVQIDLTRTWEILGEIIGESASEELIDQLFSQFCLGK 460


>gi|332705667|ref|ZP_08425743.1| tRNA modification GTPase trmE [Lyngbya majuscula 3L]
 gi|332355459|gb|EGJ34923.1| tRNA modification GTPase trmE [Lyngbya majuscula 3L]
          Length = 459

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 155/461 (33%), Positives = 240/461 (52%), Gaps = 28/461 (6%)

Query: 4   EKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
           E +TI A++T       +I I+RLSG     +   + +         S R  +G      
Sbjct: 3   ESQTIAAIATAVVPQQGSIGIVRLSGRDAIAIARTLFQ-APGRQAWESHRILYGYVRHPK 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ R
Sbjct: 62  TQQLVDEALLLIMQAPRSYTREDVVEFHCHGGIMPVQKVLQ-LCLEQGARLAQPGEFTLR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AES+ADL+ S +    + ++ G+ G+L++   +       I + IEA +
Sbjct: 121 AFLNGRLDLTQAESVADLVGSRSPAAVQAALAGLQGKLATPIREARATCLDILAEIEARI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF E  D+       ++  +  +  ++S  ++    GE++R G K+VILG  N GKSSL 
Sbjct: 181 DFEE--DLPPLDQGAIVAQLNNILTEVSQLLATADQGELLRTGLKVVILGRPNVGKSSLL 238

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NA ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIRET D VEK G++R+    
Sbjct: 239 NAWSRCDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETADQVEKIGVERSRSAA 298

Query: 297 ENADLILLLKEINS-----KKEI-SFPKNIDFIFIGTKSDLYSTYTE---------EYDH 341
             ADL+LL+ E  +      +EI    +    I +  K+DL S   E         E   
Sbjct: 299 MAADLVLLVIEATTGWSAGDQEIYQQVQERPVILVINKTDLASDKAESTLSYPNTIERVV 358

Query: 342 LISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKD 399
             ++   +G++ L   I   ++    +     +  ++R    L++    L+       K+
Sbjct: 359 KTAAAYNQGIDALEKAILDAVNRGNLQAADLDLAINQRQAAALTRAKMSLQQVQETIAKE 418

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 419 LPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 459


>gi|254456366|ref|ZP_05069795.1| tRNA modification GTPase TrmE [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083368|gb|EDZ60794.1| tRNA modification GTPase TrmE [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 443

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 184/443 (41%), Positives = 279/443 (62%), Gaps = 10/443 (2%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDKGL 65
           TI+++S+G   S I+IIR+SGP    V + +  K  P PR A+LR         ++D+G+
Sbjct: 2   TIYSLSSGPGISGIAIIRVSGPDTSNVLKLLTNKSLPKPRVATLRKINKINTSELIDEGI 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+ FP+PES+TGED AE  VHG  AV++ I   ++K+ N RLA PGEF++ AF+NGKI+L
Sbjct: 62  LLWFPAPESYTGEDMAEIQVHGSKAVIDAIHSSISKVENCRLAEPGEFTKLAFQNGKINL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           L+AES+ADLIS+ETE+QR+ +++ M+G+ +  +    +KL  I S +EA +DF + ED+ 
Sbjct: 122 LKAESIADLISAETEIQRKQAIKIMNGKSADQFNFLREKLLKILSHVEAKIDFPD-EDLP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           N   KE+      +  +I   +   K+GE IR G+KI ILG +NAGKSSL N L+ +DVA
Sbjct: 181 NDILKEIKKSSDEVLINIKKILDDQKVGERIREGFKIAILGPTNAGKSSLLNHLSNRDVA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++I GTTRDV+   L+++GY V +SDTAGIR++ + +EK+GIK +    + ADL L++
Sbjct: 241 IVSEIAGTTRDVIETHLNIDGYPVIVSDTAGIRDSKNEIEKKGIKLSLNRADEADLKLVV 300

Query: 306 KEI---NSKKEISFPKNIDFIFIGTKSDL----YSTYTEEYDHLISSFT-GEGLEELINK 357
            ++   +    +    + + I +  KSDL         ++++H++ S      ++ELI+K
Sbjct: 301 VDVKNLDFTDVLMGLLDQNSILVINKSDLLKGDIDPEIKKFNHILISIKENLNIDELISK 360

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           IK  L NKF      + + +RH  HL Q + +L   +   +    D  AE+LRLA+  LG
Sbjct: 361 IKKNLKNKFITSDDILITRERHRQHLEQCLEHLNNFNKKNEVEDFDKAAEDLRLATRHLG 420

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
            I G VDVE++L  IF+ FCIGK
Sbjct: 421 MIVGKVDVEEILGSIFNDFCIGK 443


>gi|255659827|ref|ZP_05405236.1| tRNA modification GTPase TrmE [Mitsuokella multacida DSM 20544]
 gi|260847902|gb|EEX67909.1| tRNA modification GTPase TrmE [Mitsuokella multacida DSM 20544]
          Length = 461

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 147/462 (31%), Positives = 236/462 (51%), Gaps = 26/462 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGL 56
            + +TI A++T      I +IR+SG    +    + + K   P        A   +    
Sbjct: 2   QQGDTISAIATPQGEGGIGVIRISGEHALKTAGKVFEAKNGKPLVLAGSHHAVYGHIVDE 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G+++D+ L +V  +P S+T ED  E   HGG+  +   LE L      R A  GEF++R
Sbjct: 62  KGQVVDEALALVMLAPHSYTVEDVVELQCHGGLMTLRKTLE-LTWKAGARPAERGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL EA+++ D+I + TE    ++   ++G  S        ++  + + IEA +
Sbjct: 121 AFLNGRLDLSEAQAVMDIIQARTETSLTMAAGHLTGHFSKGIHAMRHEILGMIAHIEAAI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF E+E V +  + ++  +++ ++N I+  +     G I+R+G    I+G  N GKSSL 
Sbjct: 181 DFPEDE-VDDVLTYDIQKNVVEIRNKIAGLLQTAHAGRILRDGLLTAIIGKPNVGKSSLL 239

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N+L +++ AIVTD+PGTTRD +    D+ G  ++I DTAGIR TDD+VE+ G+++    V
Sbjct: 240 NSLLREERAIVTDVPGTTRDSIEEYADVGGIPLRIIDTAGIRATDDVVERIGVEKARSYV 299

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE----------YD 340
           + A LIL L + +       ++ +   +  D I +  K DL    T E            
Sbjct: 300 KEAALILALFDASRPLDSEDEEILKLVRGRDAILLLNKDDLQPVVTAEMLQRHVKKEVPV 359

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMAS-LNEK 398
             IS+ T +GLE L   I + +    +     +  +  R    L Q   +L  A    E 
Sbjct: 360 ITISTRTQDGLENLAKAITAKVYAGTQAGQEGTFVTDARQAEVLRQADEHLAAAIRTIEA 419

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D GLD I+ +LR A   LG++TG    E +++ IFSKFCIGK
Sbjct: 420 DMGLDFISIDLRSAWEKLGELTGETVGEDIINEIFSKFCIGK 461


>gi|312128799|ref|YP_003993673.1| tRNA modification gtpase trme [Caldicellulosiruptor hydrothermalis
           108]
 gi|311778818|gb|ADQ08304.1| tRNA modification GTPase TrmE [Caldicellulosiruptor hydrothermalis
           108]
          Length = 455

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 167/457 (36%), Positives = 249/457 (54%), Gaps = 23/457 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLD 57
           E +TI A+ST      I I+R+SG S F + E + + +K         R A+L   +  D
Sbjct: 2   EFDTIVAISTPIGTGGIGIVRISGKSAFDIAEKLIRSRKYKSIKDIPVRYAALVDVYDGD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +LI F SP S+TGED  E   HGG+ V+  ILE   K    R A PGEF++RA
Sbjct: 62  -EFVDEAILIKFKSPHSYTGEDIVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+S+T + ++ + + + G LS    +    L ++ + IEA +D
Sbjct: 120 FLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNLVASIEASID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE E V   S  E+L+ I      I   I   + G+ I++G   VI+G  N GKSSL N
Sbjct: 180 FSEHE-VDEVSHDEILSTIDGALAKIEKLIKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K++ AIVTDIPGTTRDV+   LD+EG  + ++DTAG+R+T+DIVEK G+K+T   +E
Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGLPIILADTAGVRKTEDIVEKIGVKKTLESIE 298

Query: 298 NADLILLLKEINSKKEISFP-----KNIDFIFIGTKSDLYSTYTEEYD--------HLIS 344
            ADL+L + E +   +         K+  FI +  K D     +++            IS
Sbjct: 299 RADLVLFMIESSGILQEDLEIFETIKDKRFIVLVNKIDKEVKVSQDDIKRIFGKEGIFIS 358

Query: 345 SFTGEGLEELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
               + LE +   I   +L    + L   + ++ RH   L +   +L  A  N     LD
Sbjct: 359 VEHDKNLELVEKAIANEVLDRGIESLDSVLITNIRHKELLLKAKEFLLSAKENMYSVPLD 418

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I++ +++ A  SL +ITG    E ++D IFS FCIGK
Sbjct: 419 ILSIDIKNALESLYQITGKNVTEDMVDRIFSMFCIGK 455


>gi|56417300|ref|YP_154374.1| tRNA modification GTPase TrmE [Anaplasma marginale str. St. Maries]
 gi|255004780|ref|ZP_05279581.1| tRNA modification GTPase TrmE [Anaplasma marginale str. Virginia]
 gi|81821241|sp|Q5P9B1|MNME_ANAMM RecName: Full=tRNA modification GTPase mnmE
 gi|56388532|gb|AAV87119.1| thiophene and furan oxidation protein [Anaplasma marginale str. St.
           Maries]
          Length = 443

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 167/446 (37%), Positives = 251/446 (56%), Gaps = 18/446 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+ST    S +++IR+SG    +  + +  K+    R A+ +  +    + +D+ +
Sbjct: 5   DTIFALSTPMGKSGVAVIRVSGHDALKSMQLLGVKEPVRSRVATCKTLYDKKRQPIDQAV 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED  E  VHG +AV+  + EEL      R+A PGEFS RAF NGKIDL
Sbjct: 65  VLYFPGPGSFTGEDVVELQVHGSLAVIRLLFEEL--QTVFRIAEPGEFSLRAFLNGKIDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE +ADL++SETE Q R +    SG L  LY +W   L  I S +EA +DF +  DV 
Sbjct: 123 TRAEGIADLVNSETEAQLRQAFAQSSGFLERLYEEWRSSLVDILSDLEAYIDFPD--DVS 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
               + V + +  L N +  H+  G  GE +R+G ++ ILG  N GKS+LFN LA++D+A
Sbjct: 181 PQILRSVHDRVKELHNSLERHLDDGHRGERLRHGMRVAILGKPNVGKSTLFNHLARRDMA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++ PGTTRDVL   +D+ GY   + DTAGIRE+ D VE+EGI R   E   AD+ ++L
Sbjct: 241 IVSEYPGTTRDVLEAHVDIGGYPFIVVDTAGIRESTDFVEREGIMRAKSEAATADIRIML 300

Query: 306 KEINSK------KEISFPKNIDFIFIGTKSDLYST-----YTEEYDHLISSFTGEGLEEL 354
              +        + I    +   I++ +K+D            +  +L+S  T  G++ L
Sbjct: 301 FPHSEAGNLGVHEAIEGGDDGKTIYVLSKADSAKEGETRIIEGKQFYLVSVHTNLGVDSL 360

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
           ++ +K    + F K    + + +RH  HL    + +   S    +   +I+AE LRLA+ 
Sbjct: 361 LSALKERAIDGFPKSGDVLITSQRHRGHLQSAAKVI---SDITDEMPAEIVAEYLRLATK 417

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            +GK+TG V  + +LD IF +FCIGK
Sbjct: 418 EIGKVTGAVYGDDILDNIFKRFCIGK 443


>gi|90194136|gb|ABD92629.1| ThdF [Pasteurella multocida subsp. gallicida]
          Length = 436

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 152/439 (34%), Positives = 234/439 (53%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      I I+R+SGP   +V   +   K P PR A    F   DG +LD+G+ + F +P
Sbjct: 1   TAPGRGGIGILRVSGPKAVEVAHAVLG-KCPKPRMADYLPFKDSDGNVLDQGIALYFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  V++ +L+ + ++  LRLA PGEFS +AF N K+DL +AE++A
Sbjct: 60  HSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ AIVTDI G
Sbjct: 179 EAHLNDIITQLDHVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           TTRDVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD ILL+ +     
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDSTEAD 298

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELI 355
                 + S+     P NI    +  K+DL        +         S+ T +G+  L 
Sbjct: 299 NQDLEKVRSEFLTKLPSNIPVTVVRNKADLSGENEGIVEQNGYTVITLSAKTQQGVALLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASV 414
             +K  +  +   +     + +RHL  L Q   +L+   +        +++AE LR    
Sbjct: 359 EHLKQSMGYQ-TNMEGGFLARRRHLEALEQAATHLQQGHVQLTQFYAGELLAEELRRVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
            L +ITG    + LL  IF
Sbjct: 418 HLSEITGQFTSDDLLGNIF 436


>gi|312797626|ref|YP_004030548.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Burkholderia rhizoxinica HKI 454]
 gi|312169401|emb|CBW76404.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Burkholderia rhizoxinica HKI 454]
          Length = 493

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 150/465 (32%), Positives = 236/465 (50%), Gaps = 28/465 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           M  + + I A++T      I ++R+S    G     ++ + + + +   PR+A    FF 
Sbjct: 32  MQTDSDPIVAIATAPGRGGIGVVRVSFGAAGADAAVRLMDALFRDRL-APRRAVYVPFFD 90

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+          LRLA PGE
Sbjct: 91  AAGVPLDRGIGLYFPAPHSYTGEHVVELQGHGGPVVLQLVLQRCLDAGCDIGLRLAQPGE 150

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S    + +D++  +R  +
Sbjct: 151 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSRDIHRLVDEVVGLRMLV 210

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  +++ +++     K G ++R G  +V+ G  N GK
Sbjct: 211 EATLDFPE-EEIDFLEAADARGKLARIRDALAAVQRDAKQGALLREGLSVVLAGQPNVGK 269

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NAL   ++AIVT I GTTRD +   + +EG  + + DTAG+R+T D VE+ GI R+
Sbjct: 270 SSLLNALVGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTQDEVERLGIARS 329

Query: 293 FLEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDLYSTYTEEYD----- 340
           + E+E AD++L L +      +        FP  +  + I  K DL     +  D     
Sbjct: 330 WNEIERADVVLHLLDARDGMSVEDHAIAARFPAGVPVVRIFNKIDLAGVEPDVRDAGDSA 389

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--L 395
                +S+    G++ L  ++  I   +         + +RHL  L     +L  A+   
Sbjct: 390 AREVRLSAKAALGIDLLRAELLRIAGWQAG-AESVYLARERHLRALRAAGEHLATAAEHA 448

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 449 ARNAQALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 493


>gi|169825321|ref|YP_001692932.1| tRNA modification GTPase [Finegoldia magna ATCC 29328]
 gi|205829141|sp|B0S3V2|MNME_FINM2 RecName: Full=tRNA modification GTPase mnmE
 gi|167832126|dbj|BAG09042.1| tRNA modification GTPase [Finegoldia magna ATCC 29328]
          Length = 452

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 149/454 (32%), Positives = 249/454 (54%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGRI 60
            + I A+S+    + I I+R++G  C  V + + K+         RK +  +    D  I
Sbjct: 2   DDCIAAISSATGEAGIGIVRMTGEGCADVLDSVFKRANDKADFINRKMTYGHIVD-DNEI 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+    +P ++T ED  E + HGG+  V  +LE L      RLA  GEF++RAF N
Sbjct: 61  VDEVLVCYMKAPHTYTREDVVEIYTHGGVVAVRKVLEVLL-NNGARLAEAGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I ++T+    +SM+ + G ++    Q  DKL  + S +E  ++F+E
Sbjct: 120 GRIDLSQAEAIIDMIKAKTDKAYSVSMKQLEGSVNRNIKQLRDKLLDMLSHVEYSINFTE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +       +  VLN+   + + +         G IIR+G    I+G  N GKSSL NAL 
Sbjct: 180 DMQ-DELDNTPVLNEGKEVLDKLKKLSESANRGRIIRDGINTTIIGKPNVGKSSLLNALL 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIVTDIPGTTRDV+   +DL+G  +KI+DTAGIR+T+DIVEK G++++   + ++D
Sbjct: 239 KENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAGIRDTEDIVEKIGVEKSVSFISDSD 298

Query: 301 LILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTG 348
           LI+ + + +       +K +   ++   I +  K DL   +  + +         S    
Sbjct: 299 LIIAIFDSSREFDDEDRKILDLIRDKKSIVLLNKIDLDGEFDVDENLEGIEVIHTSIKNN 358

Query: 349 EGLEELINKIKSILSNKF-KKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           EG+E+L NKI  + ++ + +    +I ++ RH   +++ ++ LE +  + E    +D   
Sbjct: 359 EGIEDLENKIIEMFNDGYIEANNDNIITNIRHRDIINKAIKSLESSLHDMEAGVPIDCFE 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LR A   LG+ITG    + +L+ IFS FCIGK
Sbjct: 419 VDLRNAWEILGEITGETVDDDVLNKIFSDFCIGK 452


>gi|154490812|ref|ZP_02030753.1| hypothetical protein PARMER_00729 [Parabacteroides merdae ATCC
           43184]
 gi|154088560|gb|EDN87604.1| hypothetical protein PARMER_00729 [Parabacteroides merdae ATCC
           43184]
          Length = 460

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 149/460 (32%), Positives = 239/460 (51%), Gaps = 25/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-----KKKKPFPRKASLRYFFGLDGR 59
           ++TI AVST      I++IR+SGP    +C  I       K     +  +LRY     G 
Sbjct: 2   EDTICAVSTAPGAGGIAVIRISGPEAIAICNTIFVPRTAGKGLLSQKAYTLRYGSIRRGE 61

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P SFTGED+ E   HG + +   I++ L +    R A PGE+++RAF
Sbjct: 62  ELIDEVLIALFRAPHSFTGEDTVEITCHGSVYIQQQIMQLLIER-GCRSALPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +  Q RL++  M G  S       ++L HI S +E +LDF
Sbjct: 121 MNGKMDLSQAEAVADLIASTSAGQHRLALNQMRGGFSHELKNLREQLLHITSLMELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+ E+++     E+      ++  IS   +   +G  I+NG  + I+G +NAGKS+L N 
Sbjct: 181 SDHEELEFADRSELSTLAAHIETVISRLANSFSVGNAIKNGIPVAIIGETNAGKSTLLNV 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET D +E  GI+RTF +++ 
Sbjct: 241 LLNEDKAIVSDIHGTTRDVIEDTINIGGITFRFIDTAGIRETHDAIESIGIERTFQKLDQ 300

Query: 299 ADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------DH 341
           AD++L + +           S+K +   +    I +  K+DL +    +           
Sbjct: 301 ADIVLWMIDAADASLQIAQLSEKILPRSEGKQLILVFNKADLLTDRQFKPTDLPENVQSI 360

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDC 400
            IS+   E +++L + +              I ++ RH   L+  +  +         + 
Sbjct: 361 FISAKKREHIDKLQDLLIQAAHIPSLSSNDVIVTNIRHYEALTHALESIHRVQEGLSANL 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D I+++LR     L  I G V  +Q+L  IF +FCIGK
Sbjct: 421 SGDFISQDLRECIFHLSDIVGEVTTDQVLGNIFERFCIGK 460


>gi|218437570|ref|YP_002375899.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7424]
 gi|218170298|gb|ACK69031.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7424]
          Length = 458

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 153/455 (33%), Positives = 240/455 (52%), Gaps = 23/455 (5%)

Query: 6   ETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFGLDGRI 60
           ETI A++T       +I I+RLSG     +   +     K+     +    Y      +I
Sbjct: 7   ETIAAIATAIVPQQGSIGIVRLSGAKALDIARTLFHAPGKQVWESHRILYGYIRHPQSQI 66

Query: 61  -LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ RAF 
Sbjct: 67  LIDEALLLLMFAPRSYTKEDVIEFHCHGGIIPVQQVLQ-LCLEQGARLAQPGEFTLRAFL 125

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AES+A+L++S++    ++++ G+ G+L+    Q       I + +EA +DF 
Sbjct: 126 NGRIDLTKAESVAELVNSQSVQASQVALAGLEGKLAHPIRQLRSTCLDILAEVEARIDFE 185

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  D+     +++   +  +  +++  ++  + GE++RNG K+ I+G  N GKSSL NA 
Sbjct: 186 E--DLPPLDEEDIKQRLTEVLVEVNQILATAERGELLRNGLKVAIVGRPNVGKSSLLNAW 243

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIRET D VEK G++R+    + A
Sbjct: 244 SRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETQDRVEKIGVERSRQAAQRA 303

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           DLILL  +         ++     K+   I I  K+DL S  T  Y           +  
Sbjct: 304 DLILLTIDAQTGWTGEDEEIYQQVKHRPLILIINKTDLASADTINYPWEITQIVTTVAAK 363

Query: 348 GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDII 405
            EG+E+L   I + +   K          ++R    L++T   LE      +    LD  
Sbjct: 364 SEGIEDLEQMILNSVQAGKLTGANLEFAINQRQAAALTRTSVALEQVQDTIKNQLPLDFW 423

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +LR A  +LG++TG    E +L+ +FS+FCIGK
Sbjct: 424 TIDLRSAIQALGEVTGEEVTESILNRVFSRFCIGK 458


>gi|260467199|ref|ZP_05813376.1| small GTP-binding protein [Mesorhizobium opportunistum WSM2075]
 gi|259029052|gb|EEW30351.1| small GTP-binding protein [Mesorhizobium opportunistum WSM2075]
          Length = 443

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 198/441 (44%), Positives = 284/441 (64%), Gaps = 8/441 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ++I A+S+G LP+ ++++R+SGP    V E I        R A+LR F   DG +LD GL
Sbjct: 5   DSIIALSSGRLPAGVAVLRISGPQTRFVVETIAGGMV-KARAATLRAFKAPDGTVLDNGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED AEFHVHGG AVV G+L+ +A    +R A PGEF+RRAF NGK+DL
Sbjct: 64  VVFFPGPASFTGEDVAEFHVHGGRAVVAGMLQTIAGFDGVRHAEPGEFTRRAFLNGKVDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E+LADL+++ETE QRR ++    G  S LY  W  +L H R+ IEA++DF++E+DV 
Sbjct: 124 VETEALADLVNAETEAQRRFAIRNTEGAQSELYLGWRRRLIHARAMIEAEIDFADEDDVP 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  V +D+  + ++I  HI+     EIIR+G+++VILG  NAGKSSLFNALA++D A
Sbjct: 184 GSVSDAVWSDVHVMVDEIDRHIAGFHAAEIIRDGFEVVILGAPNAGKSSLFNALARRDAA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTD PGTTRD+L + LDL G  V+++DTAG+R+T   VE  GI+R   + + ADL+L+L
Sbjct: 244 IVTDEPGTTRDLLEVALDLGGLRVRLTDTAGLRDTPGKVEAIGIERARAKADRADLLLVL 303

Query: 306 KEINSKKEI-SFPKNIDFIFIGTKSDLYST-----YTEEYDHLISSFTGEGLEELINKIK 359
           +++    +I      I  + +GTK DL            YD +IS   G G++ L+ +I 
Sbjct: 304 EDVADPGDIGPLSAAIPALRVGTKLDLLDAQASAEAARRYDLVISVVNGAGVDALLAEIG 363

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
              ++    +   +PS  RH+  L +  R+L  A ++    G ++ AE LRLA+  LG+I
Sbjct: 364 RRAADAAGDVGDVLPSRLRHVELLDEAKRHLVRA-IDSGVAGQELRAEELRLAADRLGRI 422

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
            G +DVE +LD+IFS+FCIGK
Sbjct: 423 VGAIDVEDMLDVIFSQFCIGK 443


>gi|190171290|gb|ACE63715.1| ThdF [Cronobacter muytjensii]
          Length = 439

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 146/442 (33%), Positives = 232/442 (52%), Gaps = 21/442 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P  R A    F   DG  LD+G+ + F
Sbjct: 1   AQATHPGRGGVGILRVSGQQARDVAQAVLG-KLPKARYADYLPFKDADGTALDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 298

Query: 310 SKKE-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +                 P  +    +  K+D+       S         +S+ T +G++
Sbjct: 299 TTDATDPAQIWPDFIARLPATLPITVVRNKADVTGELPGISEVNGHSLVRLSARTSDGVD 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L + +K  +      +     + +RHL  L     +L+            +++AE LRL
Sbjct: 359 VLRSHLKQSMGFD-TSMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIF 433
           A  +L +ITG    + LL  IF
Sbjct: 418 AQQALSEITGEFTSDDLLGRIF 439


>gi|312136220|ref|YP_004003558.1| tRNA modification gtpase trme [Caldicellulosiruptor owensensis OL]
 gi|311776271|gb|ADQ05758.1| tRNA modification GTPase TrmE [Caldicellulosiruptor owensensis OL]
          Length = 455

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 163/457 (35%), Positives = 249/457 (54%), Gaps = 23/457 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLD 57
           E +TI A+ST      I I+R+SG   + V   + K +K         R A+L   +  D
Sbjct: 2   EFDTIVAISTPVGTGGIGIVRISGKDAYDVAGKLVKSRKYKSIHDIPVRYAALVDVYDGD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +LI F SP S+TGED  E   HGGI V+  ILE   K    R A PGEF++RA
Sbjct: 62  -EFVDEAILIKFRSPHSYTGEDIVEIQSHGGIVVLKRILEAAIK-NGARHAMPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+S+T + ++ + + + G LS    +    L ++ + IEA +D
Sbjct: 120 FLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNLVATIEASID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE E V   S  E+L+ I      I   I   + G+ I++G   VI+G  N GKSSL N
Sbjct: 180 FSEHE-VDEVSHDEILSTIDGALAKIEKLIKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K++ AIVTDIPGTTRDV+   LD+EG  + ++DTAG+R T+D+VEK G++RT   +E
Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAGVRRTEDVVEKIGVERTLKSIE 298

Query: 298 NADLILLLKEINSKKEISFP-----KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
            ADL+L + E +   +         K+  F+ +  K D     +++    +    G  + 
Sbjct: 299 RADLVLFMVESSGILQEDLEIFETIKDKRFVVLVNKIDREVKVSQDDIKRVFGKEGIFIS 358

Query: 353 -------ELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
                  EL+ K   + +LS   + +   + ++ RH   L ++  +L  A  N     LD
Sbjct: 359 VELDKNLELVEKAIAREVLSQNIEAIDSILITNLRHKELLLKSKEFLLSAKTNIFSVPLD 418

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I++ +++ A  +L +ITG    E ++D IFS FCIGK
Sbjct: 419 ILSIDIKNALENLYQITGKNVTEDMVDRIFSMFCIGK 455


>gi|15925702|ref|NP_373236.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156981027|ref|YP_001443286.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255007483|ref|ZP_05146084.2| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|21363015|sp|Q931E1|MNME_STAAM RecName: Full=tRNA modification GTPase mnmE
 gi|166234822|sp|A7X7A8|MNME_STAA1 RecName: Full=tRNA modification GTPase mnmE
 gi|14248487|dbj|BAB58874.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156723162|dbj|BAF79579.1| possible thiophene and furan oxidation protein [Staphylococcus
           aureus subsp. aureus Mu3]
          Length = 459

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 149/460 (32%), Positives = 240/460 (52%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI ++ST     AI I+RLSGP   ++ + + K K       S    +   G I+D   
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINY---GHIIDPES 60

Query: 66  LIV--------FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             V          +P++FT ED  E + HGGI  +N +LE L      R+A PGEF++RA
Sbjct: 61  KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D
Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++ GTTRDVL   +++    +++ DTAGIRET+DIVEK G++R+   + 
Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRSVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299

Query: 298 NADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYT---------EEYDHL 342
            ADLIL +   N              KN D I I  K DL              +     
Sbjct: 300 QADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQ 359

Query: 343 ISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
            S    EG++EL  +I+ +      +    +  S+ RH+  L Q  + ++ A    E   
Sbjct: 360 TSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGV 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 420 PMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459


>gi|291548774|emb|CBL25036.1| tRNA modification GTPase trmE [Ruminococcus torques L2-14]
          Length = 462

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 157/466 (33%), Positives = 237/466 (50%), Gaps = 30/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           MN  ++TI A+STG   S I I+R+SG    ++ + + K K+      +    +G     
Sbjct: 1   MN--QDTIAAISTGMTNSGIGIVRISGSEALEIADRVYKGKETITEVPTHTIHYGHVMDG 58

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ L++V   P +FTGED+ E + HGG  VV+ +LE + K    R A PGEF++RA
Sbjct: 59  DETVDEVLVMVMRGPRTFTGEDTVEINCHGGTYVVSRVLETVLKA-GARPAEPGEFTKRA 117

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL +AE++ D+I+SE E   + S+  + G + +   +  +K+ +  +FIE  LD
Sbjct: 118 FLNGKMDLSQAEAVIDVITSENEYALQSSISQLKGSVKNRIKEIREKIIYHTAFIETALD 177

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             E   V  +  + +      + + +   I     G I++ G + VILG  NAGKSSL N
Sbjct: 178 DPEHISVDGY-GEVLKEAAEEVIDQLKELIDSSDDGRIMKEGIQTVILGKPNAGKSSLLN 236

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            LA  D AIVTDI GTTRDVL   + L+G  + I DTAGIR+TDDIVEK G+ +     +
Sbjct: 237 ILAGHDRAIVTDIEGTTRDVLEEQIRLQGLTLNIIDTAGIRQTDDIVEKMGVDKAKEYAK 296

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG--- 348
            ADLI+ + +       N +K      +   + +  KSDL +  TEE      S  G   
Sbjct: 297 EADLIIYVVDASRNLDENDEKIFDLIYDKRTVILLNKSDLDTVVTEEMIRERISQKGVQK 356

Query: 349 ------------EGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                       +G++EL N +K++ L            ++ R    L      ++    
Sbjct: 357 QIPVIAISAKEEQGIKELENTVKAMFLKGDLSFNEEVYITNARQKNALVNARESMKKVIF 416

Query: 396 -NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +     D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 417 SIDAGMPEDFYSIDLMDAYESLGNITGESIGEDLVNEIFSKFCMGK 462


>gi|91076116|ref|XP_969524.1| PREDICTED: similar to GTP binding protein (mitochondrial), putative
           [Tribolium castaneum]
 gi|270014577|gb|EFA11025.1| hypothetical protein TcasGA2_TC004613 [Tribolium castaneum]
          Length = 479

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 180/467 (38%), Positives = 260/467 (55%), Gaps = 30/467 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRIL 61
            ++ TI+A+S+G     +++IR+SG S     + +     P PR A LR         +L
Sbjct: 14  RKQSTIYALSSGQGKCGVAVIRVSGASTELALKCLTGLTNPKPRTAILRSIKHPSSHEVL 73

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           DKGL++ FP P SFTGEDS EFHVHGGIAVV+ +L  L  +P+ RLA PGEF+RRAF N 
Sbjct: 74  DKGLVLWFPGPHSFTGEDSCEFHVHGGIAVVSSVLNALGSLPDCRLAEPGEFTRRAFHNA 133

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL E E LADL+ +ETE+QR+ +     G LS LY +W   L    + +EA +DF E 
Sbjct: 134 KLDLTEVEGLADLLQAETEIQRKQAFLQTQGALSKLYNRWRGSLIKSVAHVEAHIDFEET 193

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E +       V+ +I  ++++I  H++ G+ GE++R G K VILG  N GKSSL N L K
Sbjct: 194 ETIDEGVLDLVVQEIQIMRDEIRKHLNDGRKGELLRTGVKTVILGAPNVGKSSLMNLLCK 253

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300
           +  AIVT I GTTRD+L + L++ GY + ++DTAG+R ET+DI+EKEGI R     + AD
Sbjct: 254 RPAAIVTPIEGTTRDILEVTLNIGGYPLVLTDTAGLRSETNDIIEKEGIIRAKNSYDCAD 313

Query: 301 LILLLKEI----------------------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338
           L++L+ +                         K  +    N + + +  KSDL     + 
Sbjct: 314 LVILVLDSLKVYSWLHNHPPSSTSDYLKCYIEKLGLYDLINKECVIVFNKSDLVQDLLDL 373

Query: 339 YD---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK--RHLYHLSQTVRYLEMA 393
            +     +S  + +G+  L+N I + L     +     PS    RH  HLS  ++ L+ +
Sbjct: 374 QNSEIVHLSCKSEDGVSNLVNTIGNKLRKLCGEPSAEHPSMNQVRHRQHLSNCLKCLDSS 433

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                   + ++AE+LR A   LG + G    EQLLD+IF  FCIGK
Sbjct: 434 LDRSSSDTV-LMAEHLRKALRHLGYLVGATTTEQLLDVIFKDFCIGK 479


>gi|302380979|ref|ZP_07269440.1| tRNA modification GTPase TrmE [Finegoldia magna ACS-171-V-Col3]
 gi|303234699|ref|ZP_07321327.1| tRNA modification GTPase TrmE [Finegoldia magna BVS033A4]
 gi|302311200|gb|EFK93220.1| tRNA modification GTPase TrmE [Finegoldia magna ACS-171-V-Col3]
 gi|302494182|gb|EFL53960.1| tRNA modification GTPase TrmE [Finegoldia magna BVS033A4]
          Length = 452

 Score =  406 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 149/454 (32%), Positives = 249/454 (54%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGRI 60
            + I A+S+    + I I+R++G  C  V + + K+         RK +  +    D  I
Sbjct: 2   DDCIAAISSATGEAGIGIVRMTGEGCADVLDSVFKRANDNADFINRKMTYGHIVD-DNEI 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+    +P ++T ED  E + HGG+  V  +LE L      RLA  GEF++RAF N
Sbjct: 61  VDEVLVCYMKAPHTYTREDVVEIYTHGGVVAVRKVLEVLL-NNGARLAEAGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I ++T+    +SM+ + G ++    Q  DKL  + S +E  ++F+E
Sbjct: 120 GRIDLSQAEAIIDMIKAKTDKAYSVSMKQLEGSVNRNIKQLRDKLLDMLSHVEYSINFTE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +       +  VLN+   + + +         G IIR+G    I+G  N GKSSL NAL 
Sbjct: 180 DMQ-DELDNTPVLNEGKEVLDKLKKLSESANRGRIIRDGINTTIIGKPNVGKSSLLNALL 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIVTDIPGTTRDV+   +DL+G  +KI+DTAGIR+T+DIVEK G++++   + ++D
Sbjct: 239 KENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAGIRDTEDIVEKIGVEKSVSFISDSD 298

Query: 301 LILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTG 348
           LI+ + + +       +K +   ++   I +  K DL   +  + +         S    
Sbjct: 299 LIIAIFDSSREFDDEDRKILDLIRDKKSIVLLNKIDLDGEFDVDENLEGIEVIHTSIKNN 358

Query: 349 EGLEELINKIKSILSNKF-KKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           EG+E+L NKI  + ++ + +    +I ++ RH   +++ ++ LE +  + E    +D   
Sbjct: 359 EGIEDLENKIIEMFNDGYIEANNDNIITNIRHRDIINKAIKSLESSLHDMEAGVPIDCFE 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LR A   LG+ITG    + +L+ IFS FCIGK
Sbjct: 419 VDLRNAWEILGEITGETVDDDVLNKIFSDFCIGK 452


>gi|260588823|ref|ZP_05854736.1| tRNA modification GTPase TrmE [Blautia hansenii DSM 20583]
 gi|331083514|ref|ZP_08332626.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260540602|gb|EEX21171.1| tRNA modification GTPase TrmE [Blautia hansenii DSM 20583]
 gi|330404207|gb|EGG83755.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 457

 Score =  406 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 155/457 (33%), Positives = 239/457 (52%), Gaps = 24/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR---KASLRYFFGL---DGR 59
           +TI AV+T    S I IIR+SGP   ++   I + K    R     S    +G    +  
Sbjct: 3   DTIAAVATAMTASGIGIIRISGPKSREIAGKIYRSKGGKKRIENVPSHTIQYGFICDEDE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L++V  +P S+TGE++ E   HGG+  +  +LE + K    R A PGEF++RAF 
Sbjct: 63  IIDEVLVMVMDAPRSYTGENTVEIDCHGGVLAMKRVLETVVK-YGARPAEPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+++ E   + S+  + G +  +  +    + +  ++IE+ LD  
Sbjct: 122 NGRIDLSQAEAVIDVINAKNEYALKSSISQLRGNIQRVIKEIRQGIIYQIAYIESALDDP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +  +    +  +I  LK  ++  +   + G++++ G K VI+G  NAGKSSL N L
Sbjct: 182 EHISIDGY-GDTLKGEISLLKEKLNGLLDTVREGKLMKEGIKTVIVGKPNAGKSSLLNLL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTDI GTTRD+L   + L G  +++ DTAGIR+TDD+VEK G+K+     ++A
Sbjct: 241 VGEERAIVTDIAGTTRDILEETIVLHGISLRMIDTAGIRDTDDVVEKIGVKKAVENAKDA 300

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISS 345
           DLIL + +       N K+ I   K+   I I  K DL    TEE            +S+
Sbjct: 301 DLILYVVDSSVPLDENDKEIIELLKDKKAIVILNKMDLQQQVTEEDLKEKTNHPVVAVSA 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMAS-LNEKDCGLD 403
              EG+E L  KIK +           I  ++ RH   +    R LE+     E     D
Sbjct: 361 KEEEGIEFLEAKIKEMFFEGNLSFNDEIYITNMRHKAAIEDAKRSLELVENSIEMQMPED 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + +L  A  +LG I G    E L++ IFSKFC GK
Sbjct: 421 FFSIDLMNAYEALGSIIGESVGEDLVNEIFSKFCTGK 457


>gi|83944969|ref|ZP_00957335.1| tRNA modification GTPase [Oceanicaulis alexandrii HTCC2633]
 gi|83851751|gb|EAP89606.1| tRNA modification GTPase [Oceanicaulis alexandrii HTCC2633]
          Length = 443

 Score =  406 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 172/445 (38%), Positives = 264/445 (59%), Gaps = 12/445 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            ETIFA+++    S +++IR+SGP    V + +    +P PR A+LR F   +G ++D+G
Sbjct: 2   SETIFALASAPGRSGVAVIRVSGPETGAVLDAVAGLPRPKPRLAALRAFRTGEGAVIDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L + F  P SFTGE+ AEFHVHGG AV+  + E   ++  +R A  GEF+RRAF+NGK+D
Sbjct: 62  LALWFEGPASFTGENCAEFHVHGGTAVIEAMAERFLEL-GVRPAEAGEFTRRAFQNGKMD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE LADLI +ETE QR  ++  M+G L SLY  W ++L  + + IE ++DF +EEDV
Sbjct: 121 LTEAEGLADLIDAETEGQREQALSQMTGALRSLYEDWREQLISVLAAIEGEVDFPDEEDV 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S+     +  L + +++H+  G+ GE +R G+ I ++G  NAGKS+L NALA++D 
Sbjct: 181 PETLSETAGPPLAMLSDALTAHLEDGRRGERVREGFSIALIGEPNAGKSTLLNALARRDA 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRDV+ + L L G+ V ++DTAG+R+  D VE EG++R     +NADL L 
Sbjct: 241 AIVTDIPGTTRDVVEVRLVLAGFPVIVADTAGLRDAADQVEAEGVRRALDRAQNADLRLG 300

Query: 305 LKEINSK----KEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEGLEELI 355
           + +++ +    K +    + D   I  K D       S         +S+ +G GL  L 
Sbjct: 301 VVDVSRETLPAKLLETLTDADA-LILNKMDQGQTLHLSDELGMTRFELSAKSGLGLPALE 359

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
             ++ ++ ++  +      S  RH   + + + +L  A         ++ A ++ LA  +
Sbjct: 360 GWLEEVVRDRLSRREAPALSRARHRQAVERALDHLMAAQSQLARAP-ELAASDVHLAIRA 418

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           L  +TG +DVE +LD +FS+FCIGK
Sbjct: 419 LESLTGRIDVEDVLDRVFSQFCIGK 443


>gi|90194066|gb|ABD92594.1| ThdF [Pasteurella multocida]
          Length = 436

 Score =  406 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 152/439 (34%), Positives = 234/439 (53%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      I I+R+SGP   +V   +   K P PR A    F   DG +LD+G+ + F +P
Sbjct: 1   TAPGRGGIGILRVSGPKAVEVAHAVLG-KCPKPRMADYLPFKDSDGNVLDQGIALYFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  V++ +L+ + ++  LRLA PGEFS +AF N K+DL +AE++A
Sbjct: 60  HSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ AIVTDI G
Sbjct: 179 EAHLNDIITQLDHVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           TTRDVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD ILL+ +     
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDSTEAD 298

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELI 355
                 + S+     P NI    +  K+DL        +         S+ T +G+  L 
Sbjct: 299 NQDLEKVRSEFLTKLPSNIPVTIVRNKADLSGENEGIVEQNGYTVITLSAKTQQGVALLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASV 414
             +K  +  +   +     + +RHL  L Q   +L+   +        +++AE LR    
Sbjct: 359 EHLKQSMGYQ-TNMEGGFLARRRHLEALEQAATHLQQGHVQLTQFYAGELLAEELRRVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
            L +ITG    + LL  IF
Sbjct: 418 HLSEITGQFTSDDLLGNIF 436


>gi|115629139|ref|XP_781610.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115969591|ref|XP_001188085.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 546

 Score =  406 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/515 (32%), Positives = 248/515 (48%), Gaps = 79/515 (15%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEF-ICKKKKPFPRKASLRYFFGLD-GR 59
           +  + TIFA+++G     ++++R+SGP    V +  I  K+    R+A L   +      
Sbjct: 35  SENQRTIFALASGHGKCGVAVVRVSGPRANVVFDKMILSKRAIETRQAVLSPIYDPTTNE 94

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D GL++ F  P+SFTGED  E  VHGG AV+  +   L K+    LA PGEFS+RAF 
Sbjct: 95  LIDHGLILWFTGPKSFTGEDVCELQVHGGPAVIAALYGALGKLDGFHLAEPGEFSKRAFY 154

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL E E L DLI +ETE QR+ ++  MSG LS LY  W  +L    + +EA +DFS
Sbjct: 155 NGKLDLTEVEGLGDLIQAETEAQRQQAVRQMSGVLSKLYEGWRGRLIRTVAHVEAFIDFS 214

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+E+++    +E   ++  L  ++  H+   + GE +R+G  + I G  N GKS+L NAL
Sbjct: 215 EDENIEEGVLEEARQEVEQLLTEVRRHLQDSRKGERLRSGVHVTIAGQPNVGKSTLLNAL 274

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIV+ I GTTRDV+   L++ GY V +SDTAGIRE+ D +E+EG++R       A
Sbjct: 275 CQRPAAIVSPIAGTTRDVVESSLNIGGYPVILSDTAGIRESLDEIEREGVRRARERTNLA 334

Query: 300 DLILLLKEINSKKEISFPK----------------------------------------- 318
           DL++ + +  +      PK                                         
Sbjct: 335 DLVIYMLDATTLDPQPSPKAFLEQIDSYVTQSKLWENRTPRLCDENTPVNNENSPVSNEN 394

Query: 319 ----------NIDFIFIGTKSDLYS---------------------TYTEEYDHLISSFT 347
                       D I +  K DL                           +    +S  T
Sbjct: 395 SPVSNDNDGDQRDVIVMVNKMDLVDGESKTMLLSVMPDVLMRRGNGERERQSVLPVSCKT 454

Query: 348 GEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
            EG++  ++ ++  L              + +RH  HL++    L+     E    L + 
Sbjct: 455 EEGMDGFLDLLQEKLKKMCSNPTSSDPYLTQERHRNHLTECALSLQSF---ESRDDLVMA 511

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE LR+A   LGKITG V  E++LD+IF  FCIGK
Sbjct: 512 AEELRIALRQLGKITGHVTTEEVLDVIFKDFCIGK 546


>gi|71066697|ref|YP_265424.1| tRNA modification GTPase TrmE [Psychrobacter arcticus 273-4]
 gi|123647608|sp|Q4FPR8|MNME_PSYA2 RecName: Full=tRNA modification GTPase mnmE
 gi|71039682|gb|AAZ19990.1| tRNA modification GTPase trmE [Psychrobacter arcticus 273-4]
          Length = 478

 Score =  406 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 158/463 (34%), Positives = 244/463 (52%), Gaps = 32/463 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      + +IRLSG   + +   +  K +  PR AS   F+  DG ++D+GL+
Sbjct: 19  TIAAIATPLGRGGVGVIRLSGTRAYSIACTLTGKSEFKPRMASFCRFYQADGTVVDEGLV 78

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F  P SFTGED  E   HGG+ + N +L  + ++   + A  GEFS RAF+N K+DL+
Sbjct: 79  LYFKGPHSFTGEDVIELQGHGGMILQNQLLARVFEL-GAKQAGAGEFSYRAFDNDKLDLV 137

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE++AD I + +      ++  +SGE S    Q +++L H+R  +EA +DF +EEDV  
Sbjct: 138 QAEAIADAIDATSAAAASSAIRSLSGEFSKKINQLLEQLIHLRLHVEAAIDFPDEEDVDF 197

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   +   +   +  I   ++  K G+++R+G  +V+ G  NAGKSSL N LA ++ AI
Sbjct: 198 LSDGVIQGKLEQTQEKIQHVLATAKQGQLLRDGIHVVLAGRPNAGKSSLLNRLAGQERAI 257

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTD+ GTTRD L   + L G  + ++DTAG+RET+D VE+ GI+R    +  AD++L++ 
Sbjct: 258 VTDVAGTTRDTLQETVVLNGLTLHLTDTAGLRETEDTVERIGIERARTAITQADILLMVY 317

Query: 307 EINSKKEI-------------SFPKNIDFIFIGTKSDLY--------------STYTEEY 339
           ++    E                P+    + I  KSDL                 Y   Y
Sbjct: 318 DVTCDLEEEITPLQLAEQLFGELPEAKCLLIIANKSDLLNHNSSKGMTSISQEEIYNRGY 377

Query: 340 DHLISSF-TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           + +  S  TG G+++L+  +       F     S+ +  RHL  L +T  YL  A     
Sbjct: 378 EQVNVSCETGAGIDDLVETL--CAKVGFHPPENSLIARTRHLDALRRTAEYLAEAHEQLT 435

Query: 399 DC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                +++AE+LR A  SLG+ITG    + LL  IF  FCIGK
Sbjct: 436 VFKAGELVAESLRQAQHSLGEITGEFSADDLLGKIFGSFCIGK 478


>gi|260221780|emb|CBA30686.1| tRNA modification GTPase mnmE [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 469

 Score =  406 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/471 (35%), Positives = 246/471 (52%), Gaps = 34/471 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           ++   + I A++T +   A+ I+RLSG S     + +  K    PR+A+   F    G+ 
Sbjct: 2   LSRHSDPIAAIATASGRGAVGIVRLSGKSLGAFTQALLGKAL-RPREATYLPFPDEKGQP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA--------------KMPNLR 106
           +D GL + FP P SFTGED  E   HGG  V+  ++                   +P LR
Sbjct: 61  IDHGLALFFPGPHSFTGEDVLELQAHGGPVVLQLLVARCLALANSVQTEGVSSVLLPGLR 120

Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166
           +A  GEF++RAF N K+DL +AE++ADLI + TE   R + + +SG  S   G   D L 
Sbjct: 121 IAEAGEFTQRAFLNNKLDLAQAEAIADLIDASTEAAARSASQSLSGAFSKEIGILRDALI 180

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
           H+R  +EA LDF E E++      + +  +  L+  +   +++   G ++R G K+VI G
Sbjct: 181 HLRMLVEATLDFPE-EEIDFLQKADAVGQLQRLQQALQQVLAKATQGALLREGLKVVIAG 239

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+R +DD VEK
Sbjct: 240 QPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQETIQIEGVPLHIIDTAGLRASDDAVEK 299

Query: 287 EGIKRTFLEVENADLILLLKEINSKKEIS---------------FPKNIDFIFIGTKSDL 331
            GI+R +  +E AD +L L ++     I                 P +I  I +  KSD 
Sbjct: 300 IGIERAWQAIEAADAVLFLHDLTRSSAIEYIAADADIAGAIAEKLPASIPVIHVWNKSDA 359

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            +  T      +S+ TG GL+ L   + +    +  +   +  + +RH+  L    ++L+
Sbjct: 360 ATPETGLEGIFLSAKTGVGLDALRQNLLTAAGWQPAQ-SGAFMARQRHVQALHLVGQHLD 418

Query: 392 MAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           MAS  L      LD++AE LRL   +L  ITG    + LL +IFSKFCIGK
Sbjct: 419 MASELLASGSAALDLLAEELRLGQNALNSITGEFGADDLLGVIFSKFCIGK 469


>gi|159899958|ref|YP_001546205.1| tRNA modification GTPase TrmE [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892997|gb|ABX06077.1| tRNA modification GTPase TrmE [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 454

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 163/455 (35%), Positives = 243/455 (53%), Gaps = 25/455 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLD--GRILD 62
           +TI A++T      + IIR+SGP    + + + K ++K   R   +RY   LD  G+I+D
Sbjct: 5   DTIAALATPPGVGGVGIIRVSGPQSLAIAQALIKPRRKGVWRSYQMRYGHVLDEHGQIVD 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L + F  P SFTGED  E H HGG   +   L  LA     RLANPGEFS RAF NG+
Sbjct: 65  EVLAVFFKGPRSFTGEDILEIHCHGGPLPLRRTL-TLALAHGARLANPGEFSLRAFANGR 123

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AE+  D+I ++T +   L+++ + G LS       ++L +  +++ A  DF E +
Sbjct: 124 IDLVQAEATLDVIEAQTNLGLSLALDQLGGGLSRDLRTLREQLMYPLAYVTALTDFPE-D 182

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV +   ++ L     L   +S  ++    G ++R G +  ++G  NAGKSSL NAL + 
Sbjct: 183 DVPSEELQQPLQQAQSL---LSQLLAGADQGVVVREGARAALVGRPNAGKSSLMNALLRT 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT IPGTTRD L    +L G  V + DTAGI ETDD+VE+ G++R+   +  ADL+
Sbjct: 240 ERAIVTAIPGTTRDTLEETANLGGIPVVLIDTAGITETDDVVERIGVERSRAALSKADLV 299

Query: 303 LLLKEIN---SKKEISFPK---NIDFIFIGTKSDLYSTY----------TEEYDHLISSF 346
           LLL + +   S ++++  +       I I TK+DL                     ISS 
Sbjct: 300 LLLIDGSQPLSPEDLAIAQLTHERPTIVIATKADLGQHADLTALTQTHPKLRGSIAISSQ 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDII 405
            G GL+ L   +   L          + ++ RH   L +    LE A    ++   +D+I
Sbjct: 360 AGTGLDYLGTMVAEQLLGGLPLSDARLVTNPRHREALRRANAALEQAIQGLREGRPVDLI 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A +L  A  SLG+ITG      LL++IFS+FCIGK
Sbjct: 420 AIDLHEAIASLGEITGETVEHDLLNMIFSRFCIGK 454


>gi|15643037|ref|NP_228080.1| tRNA modification GTPase TrmE [Thermotoga maritima MSB8]
 gi|14195303|sp|Q9WYA4|MNME_THEMA RecName: Full=tRNA modification GTPase mnmE
 gi|4980765|gb|AAD35356.1|AE001709_2 thiophene oxidation protein ThdF-related GTPase [Thermotoga
           maritima MSB8]
          Length = 450

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 157/454 (34%), Positives = 251/454 (55%), Gaps = 24/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDKG 64
           +TI AV+T     AI+I+RLSGP  +++ +   + + K  PRKA   +    +G  +D+ 
Sbjct: 2   DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIH-ENGEDVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ + SP+S+TGED  E   HGG  VV  +L+ L      R+A PGEF++RAF NGK+D
Sbjct: 61  VVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLD-LFLKSGARMAEPGEFTKRAFLNGKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE++ DLI +++E   +LS+  + G L         +L  + + I  +LD+    D 
Sbjct: 120 LTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYP---DE 176

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              ++ EV+  +  +K  ++  + +   G ++  G ++VI+G  N GKS+L N L  +D 
Sbjct: 177 IETNTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDR 236

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIVTDIPGTTRDV++ ++ + G L +I DTAG+R ET+D+VE+ GI+RT  E+E AD++L
Sbjct: 237 AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVL 296

Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----------ISSFT 347
            + + +S      +K +   KN  ++ +  K D+     EE              IS+  
Sbjct: 297 FVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALK 356

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIA 406
           GEGLE+L   I       F++   S+ ++ R    L     +LE A  + K    +D+ +
Sbjct: 357 GEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKEGMPVDMAS 416

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  A   L ++TG    E LLD IFS FC+GK
Sbjct: 417 IDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 450


>gi|17939531|gb|AAH19261.1| GTP binding protein 3 (mitochondrial) [Homo sapiens]
 gi|123982804|gb|ABM83143.1| GTP binding protein 3 (mitochondrial) [synthetic construct]
 gi|123997475|gb|ABM86339.1| GTP binding protein 3 (mitochondrial) [synthetic construct]
          Length = 492

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 172/461 (37%), Positives = 253/461 (54%), Gaps = 30/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R    +E ADLIL 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 334

Query: 305 LKEINSKKEISFPK-----------------NIDFIFIGTKSDLYSTYTEEYDHLI---- 343
           + + +     S                    +   + +  KSDL S         +    
Sbjct: 335 MLDASDLASPSSCNFLATVVASVGAQSPSDSSQHLLLVLNKSDLLSPEGPGPGPDLPPHL 394

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKD 399
             S  TGEGL+ L+  ++  L+           + +  RH +HL   +  L       + 
Sbjct: 395 LLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK---QS 451

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 452 KDLALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 492


>gi|240145748|ref|ZP_04744349.1| tRNA modification GTPase TrmE [Roseburia intestinalis L1-82]
 gi|257202164|gb|EEV00449.1| tRNA modification GTPase TrmE [Roseburia intestinalis L1-82]
          Length = 457

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 145/456 (31%), Positives = 232/456 (50%), Gaps = 23/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGL---DGRI 60
           +TI A++T    S I IIR+SG     + + I   K  K      +    +G       +
Sbjct: 4   DTIAAIATAMSSSGIGIIRISGDEAVGIVDRIFSMKNGKKLSDMPTHTIHYGHIKDVDEV 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ ++++  +P+S+T ED+ E   HGG+ V+  +LE + K    R A PGEF++RAF N
Sbjct: 64  IDEVMVVLMRAPKSYTKEDTVEIDCHGGVYVMKRVLETVIK-YGARPAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ D+I ++ E   + S + +SG LS+   +  +KL H  +FIE+ LD  E
Sbjct: 123 GRIDLAQAESVIDIIHAKNEFALKSSEQQLSGSLSAAVRKVREKLLHEIAFIESALDDPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              +  +  + +   +   + +I   ++    G+I++ G   VI+G  NAGKSSL N L 
Sbjct: 183 HISLDGYP-ETLHGIVEEAQKEIQKLLANSDNGKILKEGISTVIIGKPNAGKSSLLNTLV 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   ++L G ++ + DTAGIRETDD+VEK G+ R    +  AD
Sbjct: 242 GEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDVVEKIGVDRAKKYLNEAD 301

Query: 301 LILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--------SSF 346
           L + + + +++ +      +   K+   I +  KSDL      E             S+ 
Sbjct: 302 LAIYVVDTSTQLDENDFEIMELLKDRKAIVLLNKSDLTPVTDSESIRKHLDKKMIAISAK 361

Query: 347 TGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDCGLDI 404
              G+EEL   I+ +    +         ++ RH   L +    L +           D 
Sbjct: 362 EQTGIEELEETIREMFFTGEVTFNDEVYITNIRHKTALQEARNSLNLVVQSILDGMPEDF 421

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +L  A   LG I G    + L++ IFSKFC+GK
Sbjct: 422 YSIDLMNAYEELGSIVGEAVEDDLVNEIFSKFCMGK 457


>gi|170288479|ref|YP_001738717.1| tRNA modification GTPase TrmE [Thermotoga sp. RQ2]
 gi|205829186|sp|B1L9N6|MNME_THESQ RecName: Full=tRNA modification GTPase mnmE
 gi|170175982|gb|ACB09034.1| tRNA modification GTPase TrmE [Thermotoga sp. RQ2]
          Length = 450

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 158/454 (34%), Positives = 251/454 (55%), Gaps = 24/454 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDKG 64
           +TI AV+T     AI+I+RLSGP  +++ +   + + K  PRKA   +    +G  +D+ 
Sbjct: 2   DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIH-ENGEDVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ + SP+S+TGED  E   HGG  VV  +L+ L      R+A PGEF++RAF NGK+D
Sbjct: 61  VVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLD-LFLKSGARMAEPGEFTKRAFLNGKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE++ DLI +++E   +LS+  + G L         +L  + + I  +LD+    D 
Sbjct: 120 LTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYP---DE 176

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              ++ EV+  +  +K  ++  + +   G ++  G ++VI+G  N GKS+L N L  +D 
Sbjct: 177 IETNTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDR 236

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIVTDIPGTTRDV++ ++ + G L +I DTAG+R ET+D+VE+ GI+RT  E+E AD++L
Sbjct: 237 AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVL 296

Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----------ISSFT 347
            + + +S      +K +   KN  ++ +  K D+     EE              IS+  
Sbjct: 297 FVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALK 356

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIA 406
           GEGLE+L   I       F++   S+ ++ R    L     YLE A  + K    +D+ +
Sbjct: 357 GEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGYLEDAIKSLKEGMPVDMAS 416

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  A   L ++TG    E LLD IFS FC+GK
Sbjct: 417 IDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 450


>gi|323465554|gb|ADX77707.1| tRNA modification GTPase TrmE [Staphylococcus pseudintermedius
           ED99]
          Length = 460

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 147/460 (31%), Positives = 240/460 (52%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI ++ST     AI I+RLSG    ++ + + K K       +    +   G I+D   
Sbjct: 5   DTITSISTPMGEGAIGIVRLSGHDAVEIADKLYKGKHLLKDVPTHTINY---GHIIDPET 61

Query: 66  LIV--------FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             V          +P +FT ED  E + HGGI  +N +LE L      R+A PGE+++RA
Sbjct: 62  EEVVEEVMVSVLRAPRTFTREDIVEINCHGGILTINRVLE-LTMTYGARMAEPGEYTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS L  +    +  I + +E ++D
Sbjct: 121 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I   +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 181 YPEYDDVEDATTEFLLERSQEIKLEIQKLLDTGVQGKIMREGLSTVIVGKPNVGKSSMLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++ GTTRDVL   +++ G  +++ DTAGIRET+DIVE+ G++R+   + 
Sbjct: 241 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRKALS 300

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHL 342
            ADLIL +   N       +K     KN D I I  K+DL              +     
Sbjct: 301 EADLILFVLNYNEPLTEDDRKLYEVIKNEDAIVIINKTDLEQRLDLAEVETMVGDMPIIQ 360

Query: 343 ISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
            S    +G++EL  +I+ +      +    +  S+ RH+  L Q    ++ A    E   
Sbjct: 361 TSMLQQQGIDELEIQIRDLFFGGEVQSQDMTYVSNSRHISLLKQAKNAIQDAIDAAEMGV 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+I G    E+L+D +FS+FC+GK
Sbjct: 421 PMDMVQIDLTRTWEILGEIIGESASEELIDQLFSQFCLGK 460


>gi|319796642|ref|YP_004158282.1| tRNA modification GTPase trme [Variovorax paradoxus EPS]
 gi|315599105|gb|ADU40171.1| tRNA modification GTPase TrmE [Variovorax paradoxus EPS]
          Length = 469

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 163/468 (34%), Positives = 249/468 (53%), Gaps = 33/468 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              + I A++T +   A+ I+R+SG     + E IC +    PR+A+   F   D   +D
Sbjct: 5   RTTDPIVAIATASGRGAVGIVRVSGARLAPLIEAICGRAL-KPREATYLPFRDADDEPVD 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA-------------KMPNLRLAN 109
            GL I FPSP SFTGED  E   HGG  V+  +L                 ++P LR+A 
Sbjct: 64  HGLAIHFPSPNSFTGEDVLELQAHGGTVVLQLLLARCLEAAAEADPVTGRPRLPGLRVAE 123

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEFS+RAF NGKIDL +AE++ADLI + TE   R +   +SG  S       D L H+R
Sbjct: 124 PGEFSQRAFLNGKIDLAQAEAIADLIDASTEAAARSAGRSLSGAFSREIHTLRDALIHLR 183

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
             +EA LDF E E++      +    +  L+  +++   + K G ++R G K+VI G  N
Sbjct: 184 MLVEATLDFPE-EEIDFLQKADATGQLARLQTQLAAVQQRAKQGALLREGIKVVIAGQPN 242

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
           AGKSSL NALA  ++AIV+ + GTTRDV++  + + G  + ++DTAG+RE+ D VE+ G+
Sbjct: 243 AGKSSLLNALAGAELAIVSAVAGTTRDVVSQTIQIHGVPLHVADTAGLRESSDEVEQIGV 302

Query: 290 KRTFLEVENADLILLLKEIN---------SKKEI------SFPKNIDFIFIGTKSDLYST 334
            R + ++E+AD +L L ++          +  EI        P ++  + +  K D   T
Sbjct: 303 ARAWGQIESADAVLFLHDLTRAAQPDYAAADAEILRGLQGKLPASVPVLDVWNKQDAAPT 362

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS--QTVRYLEM 392
                   +S+ TG G+E L +++ ++   +         +  RH+  L   +T   L  
Sbjct: 363 AAPARGIALSAKTGLGIEALRDQLLAMAGWQSV-PEGVYLARARHVQALGKVETHLALAA 421

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + L  +   LD++AE LRLA  +L +ITG    + LL +IFS+FCIGK
Sbjct: 422 SHLAAQAQLLDLLAEELRLAQNALNEITGEFGADDLLGVIFSRFCIGK 469


>gi|146337363|ref|YP_001202411.1| tRNA modification GTPase TrmE [Bradyrhizobium sp. ORS278]
 gi|205829156|sp|A4YJT5|MNME_BRASO RecName: Full=tRNA modification GTPase mnmE
 gi|146190169|emb|CAL74161.1| putative tRNA modification GTPase (trmE) [Bradyrhizobium sp.
           ORS278]
          Length = 444

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 176/447 (39%), Positives = 261/447 (58%), Gaps = 10/447 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA+S+G LPSAI+I+RLSGP      + +  K  P PR  +        G  
Sbjct: 1   MHPHDQTIFALSSGRLPSAIAIVRLSGPHAGAALQMLAGKM-PAPRLVTRALLRDPQGEP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ FP+P S TGE+  E H+HG  AV+  +   L++ P LR A PGEF+RRAFEN
Sbjct: 60  IDDAVVLWFPAPASATGENVVELHIHGSRAVIATLFGVLSETPELRPAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++T+ QRR ++  + G L     +W +++    + IEA +DFS+
Sbjct: 120 GKLDLTEAEGLDDLIHADTDRQRRQALRQLKGLLGDKVRRWREQIIEAAALIEAGIDFSD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV        L+ +  L  +I + ++     E +R+G  +VI G  NAGKS+L N LA
Sbjct: 180 EGDVPAELLAPALSRVQQLLLEIEAVLAAQGRAERLRDGLTVVIAGPPNAGKSTLMNQLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRD++ + LDL+GY V + DTAGIRETDD VE+EG++R      +AD
Sbjct: 240 RREVAIVSPQAGTTRDLIEVQLDLDGYPVTVIDTAGIRETDDPVEQEGVRRARDRAAHAD 299

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDL-------YSTYTEEYDHLISSFTGEGLEE 353
           L+L L E +   E+          + TK+DL                  IS+ +G G+  
Sbjct: 300 LVLWLSEHDG-AEVERQGETPLWLVRTKTDLDGAERATRPDTKASRTFGISARSGAGMGA 358

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L++ +     N F      + + +R    L QT   L+  SL+  D G +++AE LR+A+
Sbjct: 359 LLDALVGFARNFFGSTESGLITRERQRQSLRQTADALQR-SLDTVDLGEELVAEELRIAA 417

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++LG++ G VDVE LLD+IF +FCIGK
Sbjct: 418 LALGRLLGRVDVEDLLDVIFREFCIGK 444


>gi|323467508|gb|ADX71195.1| tRNA modification GTPase mnmE [Lactobacillus helveticus H10]
          Length = 467

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 138/459 (30%), Positives = 235/459 (51%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+R+SG    ++   + K      +  +    +G       
Sbjct: 12  TEFDTIAAISTPIGEGGISIVRMSGEDAVKIANEVFKGAD-LTKVPTHTIHYGHIVDPDT 70

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + +D+ ++ V  +P++FT ED  E + HGGI V N IL+ L      R+A+PGEF++RA
Sbjct: 71  DKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQ-LLLSHGARMADPGEFTKRA 129

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R++++  ++G L         ++    + +E ++D
Sbjct: 130 FVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILDTLANVEVNID 189

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D    ++K++ +    +   I   +   + G+I+RNG    I+G  N GKSSL N
Sbjct: 190 YPEY-DADAVTAKQMADTAKSVIKKIDRLLKTAQEGKILRNGLATAIVGRPNVGKSSLLN 248

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + ++G  +++ DTAGI  TDD VEK G++R+   ++
Sbjct: 249 YLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVERSKKALD 308

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY--------TEEYDHLI 343
            ADL+LLL + +       K  I   K+   I +  KSDL            T     L 
Sbjct: 309 RADLVLLLIDASQELTAEDKALIEETKDKKRIIVLNKSDLGQKITVDEMKKQTGSDVILT 368

Query: 344 SSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDCG 401
           S    + L++L   I  +     +      + +++R    L++  + L+      E    
Sbjct: 369 SILKEKNLDKLEELINKLFFAGIENSNDQVMVTNQRQTSLLTKAKKELQDVVQAVEDGIP 428

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI   +   A  +LG+ITG    ++L+  +F +FC+GK
Sbjct: 429 IDIAQIDFTGAWDTLGEITGESAPDELVTQLFRQFCLGK 467


>gi|332967862|gb|EGK06958.1| tRNA modification GTPase TrmE [Kingella kingae ATCC 23330]
          Length = 459

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 157/445 (35%), Positives = 240/445 (53%), Gaps = 24/445 (5%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESF 75
               + +IR+SG       + I   K P PR A    F    G  +D GLL+ F +P SF
Sbjct: 19  GRGGVGVIRISGKDLLPFAQHITGGKTPKPRTALYTDFVDQHGNAIDNGLLLYFAAPASF 78

Query: 76  TGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLI 135
           TGED  E   HGG  V+  +L+   ++   R+A  GEF++RAF N K+DL +AES+ADLI
Sbjct: 79  TGEDVIELQGHGGQIVLQMLLQRCLEL-GARIAEAGEFTKRAFLNNKLDLAQAESVADLI 137

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            + ++   R+++  + G  S      +D L  +R  +EA LDF E E++    + +    
Sbjct: 138 DASSQAAARMAVRSLKGAFSQHIHSLVDDLITLRMLVEATLDFPE-EEIDFLEAADAKGK 196

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +  L+  +S+ + Q   G I+R G  +V++G  N GKSSL NALA  DVAIVT+I GTTR
Sbjct: 197 LARLQAQLSTVLQQAGQGAILREGMNVVLVGAPNVGKSSLLNALAGDDVAIVTNIAGTTR 256

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSK 311
           D +   + L+G  + I+DTAG+R+TDD+VEK GI+R+   V+NAD+ L+L +    IN  
Sbjct: 257 DTVREQITLDGVPIHITDTAGLRQTDDVVEKIGIERSEKAVQNADVALILIDPAEGINPT 316

Query: 312 KEI---SFPKNIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELI 355
            +      P ++  I +  K DL       ++               +S+ TG GL+ L 
Sbjct: 317 TQAILDKLPTSLQRIEVHNKIDLRDESASLHNESAGCFLSGADVLIKLSAKTGAGLDLLK 376

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
             +   +  +  +      +  RH++ L      LE A+L   +  L+++AE+LRLA V+
Sbjct: 377 QTLLDAIGWQ-GESEGLFLARTRHIHALQAAQVELENAALCSNNQ-LELLAEHLRLAQVA 434

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
             +ITG    + LL +IFS+FCIGK
Sbjct: 435 CNEITGEFTADDLLGVIFSRFCIGK 459


>gi|283797196|ref|ZP_06346349.1| tRNA modification GTPase TrmE [Clostridium sp. M62/1]
 gi|291075154|gb|EFE12518.1| tRNA modification GTPase TrmE [Clostridium sp. M62/1]
 gi|295090272|emb|CBK76379.1| tRNA modification GTPase trmE [Clostridium cf. saccharolyticum K10]
 gi|295115469|emb|CBL36316.1| tRNA modification GTPase trmE [butyrate-producing bacterium SM4/1]
          Length = 458

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 146/457 (31%), Positives = 242/457 (52%), Gaps = 23/457 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK----KKPFPRKASLRYFFGLD-GR 59
            +TI A+STG   S I ++R+SG    +V + I +K    K    +  ++ Y    D   
Sbjct: 4   NDTIAAISTGMTNSGIGVVRISGEDAVKVADRIFRKPNGRKLSEEKTFTIHYGHIYDENE 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ L+++   P S+T ED+ E   HGG+ V+  ILE + K    RLA PGEF++RAF 
Sbjct: 64  LIDEVLVMLMRGPRSYTAEDTVEIDCHGGVLVMRKILETVVK-NGARLAEPGEFTKRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+++ +   + S+  ++G +S    +  +KL +  +FIE+ LD  
Sbjct: 123 NGRIDLSQAEAVIDVINAKNDYALKSSVNQLNGAMSRKVKELREKLIYEIAFIESALDDP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   ++ +  + +   ++ +K +I   ++    G ++R G K VILG  NAGKSSL N L
Sbjct: 183 EHISLEGYP-EILHERLIPIKQEIEKLLATADNGRVVREGVKTVILGKPNAGKSSLMNVL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTD+ GTTRD L  ++ L G  + I DTAGIR+TDDIVEK G+ +     ++A
Sbjct: 242 VGEERAIVTDVAGTTRDTLEENIRLHGISLNIIDTAGIRDTDDIVEKIGVDKARQIADDA 301

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLISS 345
           DLI+ + +       N ++ +   +    I +  K+DL            T +    +S+
Sbjct: 302 DLIIYVVDGSRPLDENDREIMELIRGRKAIVLLNKTDLEMLVTEKELEERTGQTVIPVSA 361

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
              +G++ L  +I+ +    K       + ++ RH   L +    L +     E     D
Sbjct: 362 KEQKGIDVLEERIRELFFSGKIDFNDEVMITNVRHKTALREAYDSLLLVEKSIEDQMPED 421

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + +L  A   LG I G    + L++ IFSKFC+GK
Sbjct: 422 FFSIDLMNAYEELGTIVGEALEDDLVNEIFSKFCMGK 458


>gi|298375973|ref|ZP_06985929.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_19]
 gi|298267010|gb|EFI08667.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_19]
          Length = 461

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 150/460 (32%), Positives = 237/460 (51%), Gaps = 27/460 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-------LRYFFGLDGR 59
           TI A+ST      I++IR+SGP  F++C+ I + KK     ++            G +  
Sbjct: 3   TICAISTAPGVGGIAVIRVSGPDTFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  VF +P SFTGED+ E   HG   +   IL+ L      R+A PGE+++RAF 
Sbjct: 63  TIDEVIAAVFRAPHSFTGEDTVEITCHGSTYIQQQILQSLI-SSGCRIAQPGEYTQRAFM 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S +  Q RL++  M G  S    +  ++L H  S +E +LDFS
Sbjct: 122 NGKMDLSQAEAVADLIASTSAGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + E+++     E+      ++  IS       +G  I+NG  + I+G +NAGKS+L NAL
Sbjct: 182 DHEELEFADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIV++I GTTRDV+   +++ G L +  DTAGIRET D +E  GI+R+F  ++ A
Sbjct: 242 LNEDKAIVSNIHGTTRDVIEDTININGQLFRFIDTAGIRETSDTIEALGIERSFKALDQA 301

Query: 300 DLILLLKEINSK--------KEIS-FPKNIDFIFIGTKSDL--------YSTYTEEYDHL 342
            +++L+ ++           +EI+    N   I    K D+        +S  TE +  +
Sbjct: 302 QIVILMYDLTRDLKDFETFYQEIAPRLTNKSVILAMNKCDVLPASSLPTFSFPTEGWHQI 361

Query: 343 ISSFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DC 400
             S  G+  + EL   +  + S         I ++ RH   L+  +  +           
Sbjct: 362 AISAKGKLHIAELQQLLTEVSSIPTLHQSDIIVTNARHFEALTHALEAIHRVQEGLNSSL 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D I+++LR     L  I G V  +Q+L  IF  FCIGK
Sbjct: 422 SGDFISQDLRECIFHLSDIVGEVTTDQVLGNIFQHFCIGK 461


>gi|332521867|ref|ZP_08398316.1| tRNA modification GTPase TrmE [Lacinutrix algicola 5H-3-7-4]
 gi|332042539|gb|EGI78741.1| tRNA modification GTPase TrmE [Lacinutrix algicola 5H-3-7-4]
          Length = 464

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 158/466 (33%), Positives = 250/466 (53%), Gaps = 28/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRYFFG 55
           M+   +TI A++T +   A++IIRLSG +   +     K  K        +  ++     
Sbjct: 1   MSFNNDTIVALATASGAGAVAIIRLSGEAAITIANAGFKSVKKNKSLLKQKTHTIHLGHI 60

Query: 56  LDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
           +DG RI+D+ L+ VF +P S+TGE+  E   HG + +   I++ L      R+A+ GEF+
Sbjct: 61  VDGDRIIDEVLVSVFKNPNSYTGENVVEISCHGSVYIQQEIIQ-LFLRNGCRMADAGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF NGK+DL +AE++ADLI+S+ E   +++M+ M G  SS   +  ++L +  S +E 
Sbjct: 120 LRAFLNGKLDLSQAEAVADLIASDNEASHQIAMQQMRGGFSSEIAKLREELLNFASLLEL 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDF+E EDV+     +    I  +   +   I    +G +I+NG  + I+G  N GKS+
Sbjct: 180 ELDFAE-EDVEFADRTQFKELINRITFVLKRLIDSFAVGNVIKNGIPVAIVGEPNVGKST 238

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL  ++ AIV+DI GTTRD +  +L +EG   +  DTAGIRET D+VE  GIK+TF 
Sbjct: 239 LLNALLNEERAIVSDIAGTTRDTIEDELVIEGIGFRFIDTAGIRETKDVVESIGIKKTFE 298

Query: 295 EVENADLILLLKEINSKK--------EISFPKNI----DFIFIGTKSD-LYSTYTEEY-- 339
           ++E A +++LL      +        EI   KN       + I  K D L ++ TEE   
Sbjct: 299 KMEQAQVVILLFSAEEFQTESQRLILEIEKIKNRFPLKPLVIIANKIDTLNASETEELKS 358

Query: 340 ----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                HL+S+ +G G+E L  K+   ++    +   +I ++ RH   L +    +     
Sbjct: 359 KIDNIHLLSAKSGIGVEALKEKLIGFVNTGALRNNETIVTNTRHYDSLLKAFEEINKVKA 418

Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E     D++A ++R A    G+ITG +  + LL  IF+ FCIGK
Sbjct: 419 GLESGLSGDLMAIDVRQALYHFGEITGAITNDDLLGNIFANFCIGK 464


>gi|329769256|ref|ZP_08260673.1| tRNA modification GTPase TrmE [Gemella sanguinis M325]
 gi|328839250|gb|EGF88833.1| tRNA modification GTPase TrmE [Gemella sanguinis M325]
          Length = 460

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 145/460 (31%), Positives = 239/460 (51%), Gaps = 25/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LD 57
            ETI A+ST     AI I+RLSG   F + + I +  K K      +    +G       
Sbjct: 2   SETICAISTALGEGAIGIVRLSGDEAFSIADKIVRLPKGKTVESLPTHTINYGNVIDPAT 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +++ +L+    P ++T ED  E + HGGI  +  +L  L      R+A PGEF++RA
Sbjct: 62  NEKIEEIMLVKMVGPRTYTTEDVVEINCHGGIITIQKVL-ALCLEHGARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++   M G LS+L  +   ++  I + +E ++D
Sbjct: 121 FLNGRIDLTQAEAVIDFIKSKTDEASQIANNQMQGRLSTLIKRLRAEILDILTVVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +D++  ++K +L     +K  +   +   K G+II+ G    I+G  N GKSSL N
Sbjct: 181 YPEYDDLEIETTKTILEKSTSIKRSLEDLLETSKQGKIIKEGINTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDVL   ++++G  +K+ DTAGIRETDDIVE+ G++R+   +E
Sbjct: 241 NLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDDIVEQIGVQRSKDALE 300

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHL 342
            ADL+L L         + K+ +   K    I I  K DL +    E             
Sbjct: 301 KADLVLFLLNSSEELTEDDKELLKLTKGKTTIVILNKLDLETKIDLEEVEKLAHNHPIIK 360

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYL-EMASLNEKDC 400
            S  T +G++EL   I+ +      +    +  S+ R +  + + +  L E     E   
Sbjct: 361 TSMTTYKGIDELEKNIRDLFFGGAARPKDATYLSNTRQINLIQRALASLNEAIGAAELGL 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +   A   LG++ G    ++L++ +FS+FC+GK
Sbjct: 421 EVDMVLIDYTNAFNLLGEVIGENSGDELINELFSRFCLGK 460


>gi|160872053|ref|ZP_02062185.1| tRNA modification GTPase TrmE [Rickettsiella grylli]
 gi|159120852|gb|EDP46190.1| tRNA modification GTPase TrmE [Rickettsiella grylli]
          Length = 462

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 168/459 (36%), Positives = 251/459 (54%), Gaps = 24/459 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
               ETI A++T      I++IR+SG +  ++   + ++  P  R A    F   DG ++
Sbjct: 8   TKANETIVALATPQGRGGIAVIRISGSTIKRIANQLLRRA-PRKRYAEYCSFLAKDGSLI 66

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+GL + FP+P SFTGED  E   HGG  VV+ +L+ + ++   RLA PGEF+ RAF N 
Sbjct: 67  DQGLALYFPAPHSFTGEDVLELQCHGGPIVVDCLLKRVLQL-GARLARPGEFTERAFLNA 125

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL++AE++ADLI++E+E   R +M  + G+ S    Q  D +  +R ++EA +DFS+ 
Sbjct: 126 KLDLVQAEAIADLINAESEQAARAAMRSLQGDFSLRINQIRDSIIELRMWLEASIDFSD- 184

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E++      +VL  +  +  DI +  +  K G +++ G  + I+G  NAGKSSL N L+ 
Sbjct: 185 ENIDCLKDGDVLTRLNSILTDIQNIKNLAKQGTLLQEGINLAIVGPPNAGKSSLLNRLSL 244

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           K+ +IVT   GTTRDV+   + +EG L+ I DTAG+R T D +EKEGIKRT  E+  A+L
Sbjct: 245 KEASIVTSFAGTTRDVIREKIQIEGLLIHIVDTAGLRITIDEIEKEGIKRTLAEIAKANL 304

Query: 302 ILLLKEINS---------KKEISFPKN----IDFIFIGTKSDL------YSTYTEEYDHL 342
           IL + + N+         K++  F KN       + I  K DL                 
Sbjct: 305 ILWVVDHNTTRHEDLIFWKEQELFLKNIFLDNRILIIRNKIDLSQENARIEKELNFNVIK 364

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TGEG   L N +K+  +        +  + +RHL  LS T   L  A    K+   
Sbjct: 365 LSAKTGEGFSLLYNYLKN-YAGYTNSSESNFSARRRHLDALSHTQMTLNKALKKIKENTF 423

Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++IAE+L +A   LG+ITG      LL  IFS FCIGK
Sbjct: 424 SELIAEDLAMAQNFLGEITGHFTTHDLLGKIFSNFCIGK 462


>gi|305666624|ref|YP_003862911.1| tRNA modification GTPase [Maribacter sp. HTCC2170]
 gi|88708895|gb|EAR01130.1| tRNA modification GTPase [Maribacter sp. HTCC2170]
          Length = 470

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 154/468 (32%), Positives = 242/468 (51%), Gaps = 35/468 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVC----EFICKKKKPFPRKASLRYFFGLDGRIL 61
           +TI A++T A   AI++IRLSG     +       I  K     +  ++     +DG +L
Sbjct: 5   DTIVALATPAGSGAIAVIRLSGKDAKSIAGSYFRSIHGKDLSKQKSHTIHLGHIIDGDVL 64

Query: 62  -DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
            D+ LL +F  P S+TGED  E   HG   +   I++ L      R+A  GEF+ RAF N
Sbjct: 65  MDEVLLSIFNGPNSYTGEDVIEISCHGSPYIQQQIIQ-LFLRNGCRMAEAGEFTLRAFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI+SE E   +++++ M G  S+      D+L +  S IE +LDF+E
Sbjct: 124 GKLDLSQAEAVADLIASENETTHQIAIQQMRGGFSNEIKLLRDELMNFASLIELELDFAE 183

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            EDV+     +  + IL ++N +   I    +G +I+ G  + I+G  N GKS+L NAL 
Sbjct: 184 -EDVEFADRLKFQDLILRIQNVLKKLIDSFAVGNVIKKGIPVAIVGEPNVGKSTLLNALL 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV+DI GTTRD +  ++ + G   +  DTAGIR+T DIVE  GIK+TF ++E + 
Sbjct: 243 NEEKAIVSDIAGTTRDAIEDEIAIGGIGFRFIDTAGIRDTKDIVENIGIKKTFEKIEQSQ 302

Query: 301 LILLLKEINSKK--EISFPK-------------NIDFIFIGTKSD------------LYS 333
           ++L L      +  EIS                N   + I  K D            L S
Sbjct: 303 VVLFLHSAEEFQNAEISLTSLQNEVGKISTKHPNKPLVIIVNKIDILNNKERQQLETLLS 362

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
                   LIS+ TGE +E++ N + + ++    +   +I ++ RH   L + +  ++  
Sbjct: 363 NIEGTTYKLISAKTGESVEDVKNMLLNFVNTGALRNNETIVTNTRHYDALLKALEEIQKV 422

Query: 394 SLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +     D++A ++R A    G+ITG +  + LL  IF+ FCIGK
Sbjct: 423 QHGMDNHLSGDLLAIDIRQALHHFGEITGEITSDDLLGNIFANFCIGK 470


>gi|297588067|ref|ZP_06946711.1| tRNA modification GTPase TrmE [Finegoldia magna ATCC 53516]
 gi|297574756|gb|EFH93476.1| tRNA modification GTPase TrmE [Finegoldia magna ATCC 53516]
          Length = 452

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 149/454 (32%), Positives = 250/454 (55%), Gaps = 21/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGRI 60
            + I A+S+    + I I+R++G  C  V + + K+         RK +  +    D  I
Sbjct: 2   DDCIAAISSATGEAGIGIVRMTGEGCVDVLDSVFKRANDNADLINRKMTYGHIVD-DNEI 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+    +P ++T ED  E + HGG+  V  +LE L      RLA  GEF++RAF N
Sbjct: 61  VDEVLVCYMKAPHTYTREDVVEIYTHGGVVAVRKVLEVLL-NNGARLAEAGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I ++T+    +SM+ + G ++    Q  D+L  + S +E  ++F+E
Sbjct: 120 GRIDLSQAEAIIDMIKAKTDKAYSVSMKQLEGSVNRNIKQLRDQLLDMLSHVEYSINFTE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +       +  VLN+   + + +         G IIR+G    I+G  N GKSSL NAL 
Sbjct: 180 DMQ-DELDNTPVLNEGKEVLDKLKKLSESANRGRIIRDGINTTIIGKPNVGKSSLLNALL 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIVTDIPGTTRDV+   +DL+G  +KI+DTAGIR+T+DIVEK G++++   + ++D
Sbjct: 239 KENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAGIRDTEDIVEKIGVEKSVSFISDSD 298

Query: 301 LILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFT-G 348
           LI+ + + +       +K +   ++   I +  K DL     +    E  + +  S    
Sbjct: 299 LIIAIFDSSREFDDEDRKILDLIRDKKSIVLLNKIDLDGGFDFDENLEGIEVIRISIKQN 358

Query: 349 EGLEELINKIKSILSNKF-KKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           EG+E+L NKI  + ++ + +    +I ++ RH   +++ ++ LE +  + E    +D   
Sbjct: 359 EGIEDLENKIIEMFNDGYIEANNDNIITNIRHRDIINKAIKSLESSLHDMECGVPIDCFE 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LR A   LG+ITG    + +L+ IFS FCIGK
Sbjct: 419 VDLRNAWEILGEITGETVDDDVLNKIFSDFCIGK 452


>gi|193082991|ref|NP_116009.2| tRNA modification GTPase GTPBP3, mitochondrial isoform V [Homo
           sapiens]
 gi|313104112|sp|Q969Y2|GTPB3_HUMAN RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial;
           AltName: Full=GTP-binding protein 3; AltName:
           Full=Mitochondrial GTP-binding protein 1; Flags:
           Precursor
 gi|13650157|gb|AAK37568.1| mitochondrial GTP-binding protein 1 [Homo sapiens]
          Length = 492

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 172/461 (37%), Positives = 253/461 (54%), Gaps = 30/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R    +E ADLIL 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 334

Query: 305 LKEINSKKEISFPK-----------------NIDFIFIGTKSDLYSTYTEEYDHLI---- 343
           + + +     S                    +   + +  KSDL S         +    
Sbjct: 335 MLDASDLASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHL 394

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKD 399
             S  TGEGL+ L+  ++  L+           + +  RH +HL   +  L       + 
Sbjct: 395 LLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK---QS 451

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 452 KDLALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 492


>gi|213962698|ref|ZP_03390959.1| tRNA modification GTPase TrmE [Capnocytophaga sputigena Capno]
 gi|213954693|gb|EEB66014.1| tRNA modification GTPase TrmE [Capnocytophaga sputigena Capno]
          Length = 471

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 147/466 (31%), Positives = 245/466 (52%), Gaps = 30/466 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL---D 57
           +  +TI A++T +   AI++IRLSG +  ++ + I K   KK      S     G+    
Sbjct: 8   YNSDTIVALATASGMGAIAVIRLSGANAIEIADQIFKSYSKKSLVDAPSHTVHLGILEAK 67

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ L  +F   +S+TGE   EF  HG   +V  +++ L      RLA  GEF++RA
Sbjct: 68  NQVIDECLATIFKGTKSYTGEPVVEFSCHGSNYIVEEVIK-LCLANGTRLAEAGEFTKRA 126

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+ L +AE++ADLI+S+++   +++++ M G  +S       +L +  S IE +LD
Sbjct: 127 FLNGKLALNQAEAVADLIASDSKASHQVALQQMRGGFTSEIEALRQELLNFASLIELELD 186

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE EDV+     +  + +  +K  +SS I    +G +++NG  + I+G  NAGKS+L N
Sbjct: 187 FSE-EDVEFADRSQFKSLLKTIKTTLSSLIQSFSVGNVLKNGIPVAIVGKPNAGKSTLLN 245

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  ++ AIV+DI GTTRD +   L + G   +  DTAGIR+T D +E  G+++   ++E
Sbjct: 246 ALLNEERAIVSDIAGTTRDTIEETLHIGGIAFRFIDTAGIRDTQDQIEAIGVQKAKEKIE 305

Query: 298 NADLILLLKE--INSKKEIS------FPKNIDFIFIGTKSDLYSTYTEEYD--------- 340
            A +IL L +   N+  EI+      + +   ++ +  K+DL    T  +D         
Sbjct: 306 KASVILFLFDDKDNTVSEITTFVKENYREGTKYVLLHNKTDLSPEETTAFDDEILQSLKG 365

Query: 341 -----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                  IS+  G+ + EL   +             ++ ++ RH   LS  ++ +E    
Sbjct: 366 YTDTLLRISAKEGQNITELKRFLADYAQTLSHIGKATVVTNIRHYEALSNALQAIEKVEE 425

Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +     D++A ++R     LG ITG V  E++L  IFS+FCIGK
Sbjct: 426 GMQMHLSGDLLAIDIRETLYHLGSITGEVSNEEVLGNIFSRFCIGK 471


>gi|257452996|ref|ZP_05618295.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_5R]
 gi|257466623|ref|ZP_05630934.1| tRNA modification GTPase TrmE [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917778|ref|ZP_07914018.1| thiophene and furan oxidation protein THDF [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317059536|ref|ZP_07924021.1| thiophene and furan oxidation protein THDF [Fusobacterium sp.
           3_1_5R]
 gi|313685212|gb|EFS22047.1| thiophene and furan oxidation protein THDF [Fusobacterium sp.
           3_1_5R]
 gi|313691653|gb|EFS28488.1| thiophene and furan oxidation protein THDF [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 457

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 148/456 (32%), Positives = 243/456 (53%), Gaps = 23/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR-I 60
           +TI A+ST      ISI+R+SGP    + E I   KK  P    R   + Y     G  I
Sbjct: 4   DTIAAISTPRGEGGISIVRISGPESLHILEKIFFPKKNIPVKELRNYGIHYGHIKKGEEI 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ +  +P ++T ED  E + HGG  +   ILE L      RLA  GEF+RRAF +
Sbjct: 64  IDEVLVSIMKAPNTYTREDIVEINCHGGYLITEKILE-LVLSSGARLAEMGEFTRRAFFH 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I  +TE    LSM  + G+L          +  + + I   LD+ E
Sbjct: 123 GRIDLTQAEAVMDIIHGKTETSLSLSMNQLRGDLKEKILSLKKAILDLAAHINVVLDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E + +   + +L ++  +  +I   IS  + G++I+ G K VI+G  N GKSSL N++ 
Sbjct: 183 -EGIDDPIPENLLKNLRQVSVEIKELISSYQKGKMIKEGVKTVIIGKPNVGKSSLLNSIL 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVT + GTTRD++   ++++G  + + DTAGIR T D+VE  G+ ++   ++ AD
Sbjct: 242 REERAIVTQVAGTTRDIIEEVINIKGIPLVLVDTAGIRNTTDLVENIGVMKSKEFLQKAD 301

Query: 301 LILLLKEINSK-----KEI--SFPKNIDFIFIGTKSDLYSTY------TEEYDHLISSFT 347
           L+L + + + +     +EI  S  +N   I I  K+DL            +    IS+  
Sbjct: 302 LVLFVLDASQELSKEDEEIYASLQENQKVIGILNKTDLEKKIQISSLSKIKNWIEISAMK 361

Query: 348 GEGLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRYLE-MASLNEKDCGLDI 404
             G+EE+  KI   +  +  +      I ++ RH   L +T + +E + +  E+   +D+
Sbjct: 362 YIGIEEMEEKIYQYILQENVEESSKKLILTNIRHKSALEKTNQAIENIFATVEQGLPMDL 421

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A +++ A  SL +ITG +  E +LD IF  FC+GK
Sbjct: 422 MAVDIKEALDSLSEITGEISTEDVLDHIFHNFCVGK 457


>gi|329768091|ref|ZP_08259600.1| tRNA modification GTPase mnmE [Gemella haemolysans M341]
 gi|328838246|gb|EGF87858.1| tRNA modification GTPase mnmE [Gemella haemolysans M341]
          Length = 460

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 147/460 (31%), Positives = 240/460 (52%), Gaps = 25/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LD 57
            ETI A+ST     AI I+RLSG   F + E I +  K K     AS    +G       
Sbjct: 2   SETICAISTALGEGAIGIVRLSGDEAFSIAEKIVRLPKGKTVESLASHTINYGNVVDPTT 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +++ +L+    P ++T ED  E + HGGI  +  +L  L      R+A PGEF++RA
Sbjct: 62  NEKIEEIMLVKMVGPRTYTTEDVIEINCHGGIVTIQKVL-ALCLEHGARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++   M G LS+L  +   ++  I + +E ++D
Sbjct: 121 FLNGRIDLTQAEAVIDFIKSKTDEASQIANNQMQGRLSTLIKRLRTEILDILTVVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +D++  ++K +L     ++N + S +   K G+II+ G    I+G  N GKSSL N
Sbjct: 181 YPEYDDLEIETTKTILEKSTSIRNSLESLLETSKQGKIIKEGINTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDVL   ++++G  +K+ DTAGIRETDDIVE+ G+KR+   +E
Sbjct: 241 NLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDDIVEQIGVKRSKEALE 300

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHL 342
            ADL+L L         + K+ +   +    I I  K DL +                  
Sbjct: 301 KADLVLFLLNSSEELTEDDKELLKLTEGKTTIVILNKLDLETKIDIAEVEKLAYNHPIIK 360

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
            S  T +G++EL   I+ +      +    +  S+ R +  + + +  L  A    E   
Sbjct: 361 TSMTTYKGIDELEKNIRDLFFGGAARPKDATYLSNTRQINLIQRALASLNDAIGAAELGL 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +       LG++ G    ++L++ +FS+FC+GK
Sbjct: 421 EVDMVLIDYTNTFNLLGEVIGENSGDELINELFSRFCLGK 460


>gi|71277760|ref|YP_271687.1| tRNA modification GTPase TrmE [Colwellia psychrerythraea 34H]
 gi|123630481|sp|Q47U36|MNME_COLP3 RecName: Full=tRNA modification GTPase mnmE
 gi|71143500|gb|AAZ23973.1| tRNA modification GTPase TrmE [Colwellia psychrerythraea 34H]
          Length = 471

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 159/458 (34%), Positives = 246/458 (53%), Gaps = 35/458 (7%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG----RILDKGLLIVFP 70
                + IIR+SGP    V + I   K P  RKA    F         ++LD+G+ + F 
Sbjct: 17  PGRGGVGIIRVSGPEAKNVAQAILG-KLPEVRKAEYLPFLDCTSTDKTQVLDQGIALYFK 75

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
           +P SFTGED  EF  HGG  +++ +L+ +   P + +A PGEFS +AF N K+DL +AE+
Sbjct: 76  APNSFTGEDVIEFQGHGGPVILDMLLKVILAQPKVIMAKPGEFSEQAFLNDKLDLTQAEA 135

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +ADLI+S +E   R ++  + G+ S L  + ++ + H+R ++EA +DF E E++   + K
Sbjct: 136 IADLINSSSEQAARSALHSLQGDFSKLVNEMVESIIHLRMYVEAAIDFPE-EEIDFLADK 194

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           +++ D+  + + +     Q + G IIR G ++VI G  NAGKSSL NAL+ K  AIVTDI
Sbjct: 195 KIVTDLKAIISRVEDVRKQAQQGSIIREGMRVVIAGRPNAGKSSLLNALSGKQTAIVTDI 254

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            GTTRDVL   + ++G  + I DTAG+R++DD+VEK GI+R + E+  AD +LL+ + + 
Sbjct: 255 AGTTRDVLAEQIHIDGMPLHIIDTAGLRDSDDVVEKIGIERAWQEINQADRVLLMVDASE 314

Query: 311 KKEI----------------SFPKNIDFIFIGTKSDLYSTY-----------TEEYDHLI 343
              I                  P+ I    I  K+D+               T+     +
Sbjct: 315 DHSILEDDQDIKDFYPEFFAKLPEKIGLTLIRNKADVNDAKTGFTEFTDTDGTQHAIITL 374

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           S+ TG+G++ L   +K+I+  +         + +RHL  L  T ++L       E     
Sbjct: 375 SAKTGKGVDSLKEHLKTIMGYQ-GGTEGGFMARRRHLVALENTHQHLLTGLDQLESYVAG 433

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I+AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 434 EILAEELRICQQELDQITGEFTSDDLLGKIFSSFCIGK 471


>gi|150008732|ref|YP_001303475.1| tRNA modification GTPase TrmE [Parabacteroides distasonis ATCC
           8503]
 gi|205415787|sp|A6LDT9|MNME_PARD8 RecName: Full=tRNA modification GTPase mnmE
 gi|149937156|gb|ABR43853.1| putative GTPase, ThdF family [Parabacteroides distasonis ATCC 8503]
          Length = 461

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 151/460 (32%), Positives = 236/460 (51%), Gaps = 27/460 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-------LRYFFGLDGR 59
           TI A+ST      I++IR+SGP  F++C+ I + KK     ++            G +  
Sbjct: 3   TICAISTAPGVGGIAVIRVSGPDTFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  VF +P SFTGED+ E   HG   +   IL+ L      R+A PGE+++RAF 
Sbjct: 63  TIDEVIAAVFRAPHSFTGEDTVEITCHGSTYIQQQILQSLI-SSGCRIAQPGEYTQRAFM 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S +  Q RL++  M G  S    +  ++L H  S +E +LDFS
Sbjct: 122 NGKMDLSQAEAVADLIASTSAGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + E+++     E+      ++  IS       +G  I+NG  + I+G +NAGKS+L NAL
Sbjct: 182 DHEELEFADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIV+DI GTTRDV+   +++ G L +  DTAGIRET D +E  GI+R+F  ++ A
Sbjct: 242 LNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETSDAIEALGIERSFKALDQA 301

Query: 300 DLILLLKEINSK--------KEIS-FPKNIDFIFIGTKSDLYST-------YTEEYDHL- 342
            +++L+ ++           +EI+    N   I    K D+  T       +  E  H  
Sbjct: 302 QIVILMYDLTRDLKDFEAFYQEIAPRLTNKSVILAMNKCDVLPTSSLPTFSFPTEGWHQI 361

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DC 400
            IS+ +   + EL   +  + S         I ++ RH   L+  +  +           
Sbjct: 362 AISAKSKLHIAELQQLLTEVSSIPTLHQSDIIVTNVRHFEALTHALEAIHRVQEGLNSSL 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D I+++LR     L  I G V  +Q+L  IF  FCIGK
Sbjct: 422 SGDFISQDLRECIFHLSDIVGEVTTDQVLGNIFRHFCIGK 461


>gi|316931724|ref|YP_004106706.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris DX-1]
 gi|315599438|gb|ADU41973.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris DX-1]
          Length = 442

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 170/446 (38%), Positives = 246/446 (55%), Gaps = 10/446 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA++TG LPSAI+I RLSGP    V   +     P PR+A         G +
Sbjct: 1   MHPSDQTIFALATGPLPSAIAIFRLSGPQAGNVVTALTGS-LPAPRRAVRCDLRNRSGEM 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + FP P S TGED AE H+HG  AV   +++ L+    +R A PGEF+RRAFEN
Sbjct: 60  IDDGVALWFPGPASATGEDVAELHIHGSRAVAAALIKTLSAFEGVRPAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++TE+QRR ++  + G L     +W D++    + +EA +DFS+
Sbjct: 120 GKLDLTEAEGLDDLIHADTEVQRRQALRQLQGVLGDRARRWRDQIIEALALVEAGIDFSD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV           I  L  +I+  +++   GE +R+G  + I G  N GKS+L N LA
Sbjct: 180 EGDVAADLMAPARAKIAALSAEIAEVLAEQGQGEKLRDGMVVAIAGPPNVGKSTLINRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++DVAIV+   GTTRDV+ + LDL GY V + DTAG+R++DD +E+EG++R       AD
Sbjct: 240 RRDVAIVSPHAGTTRDVIEVHLDLGGYPVTVIDTAGLRDSDDPIEQEGVRRARARAAAAD 299

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGEGLEEL 354
           L+L L       +       +   +  K DL  T         + D  IS+ +GEG+  L
Sbjct: 300 LVLWLSTPTDASDPDL-SGPEVWRVRNKIDLAKTDAGRKKGSSDADFRISASSGEGVGGL 358

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
           + ++    +  F      + +  RH   L+     L  +         +I+AE LR AS 
Sbjct: 359 LRELTQFAAQYFASAEAGLITRDRHRLLLADAGAALGRSLAP--GLAEEIVAEELRAASH 416

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            LG++ G VDVE +L  IF +FCIGK
Sbjct: 417 DLGRLLGRVDVEDVLGEIFGRFCIGK 442


>gi|239818256|ref|YP_002947166.1| tRNA modification GTPase TrmE [Variovorax paradoxus S110]
 gi|239804833|gb|ACS21900.1| tRNA modification GTPase TrmE [Variovorax paradoxus S110]
          Length = 471

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/473 (34%), Positives = 248/473 (52%), Gaps = 36/473 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T +   A+ I+R+SG     + + +C +    PR+A+   F    G  
Sbjct: 2   LARTTDPIVAIATASGRGAVGIVRVSGARLAPLVDALCGRPL-KPREATYLPFRDAAGEP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA-------------KMPNLRL 107
           +D GL I FPSP SFTGED  E   HGG  V+  +L                 ++P LR+
Sbjct: 61  VDHGLAIHFPSPHSFTGEDVLELQAHGGTVVLQLLLARCLEAAAEADPVTGRPRLPGLRV 120

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEFS+RAF NGKIDL +AE++ADLI + TE   R +   +SG  S       D L H
Sbjct: 121 AEPGEFSQRAFLNGKIDLAQAEAIADLIDASTEAAARSAGRSLSGAFSREIHALRDALIH 180

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA LDF E E++      +    +  L+  +++   + K G ++R G K+VI G 
Sbjct: 181 LRMLVEATLDFPE-EEIDFLQKADATGQLAKLQAQLAAVQQRAKQGALLREGIKVVIAGQ 239

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL NALA  ++AIV+ + GTTRDV++  + + G  + + DTAG+RE+ D VE+ 
Sbjct: 240 PNAGKSSLLNALAGAELAIVSAVAGTTRDVVSETIQIHGVPLHVVDTAGLRESSDEVEQI 299

Query: 288 GIKRTFLEVENADLILLLKEIN---------SKKEI------SFPKNIDFIFIGTKSD-- 330
           G+ R + ++E AD +L L ++          +  EI        P ++  + +  K D  
Sbjct: 300 GVARAWGQIEGADAVLFLHDLTRTGQPEYAAADAEILRVLQHKLPASVPVLDVWNKQDAA 359

Query: 331 -LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ--TV 387
            +  T        +S+ TG G+E L  ++ ++   +         +  RH+  L Q  T 
Sbjct: 360 PMPETAGAAQGIALSAKTGLGIEALREQLLAMAGWQAV-PEGVYLARARHVQALGQVETH 418

Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L  + L  +   LD++AE LRLA  +L +ITG    + LL +IFS+FCIGK
Sbjct: 419 LALAASHLAAQAQLLDLLAEELRLAQNALNEITGEFGADDLLGVIFSRFCIGK 471


>gi|189460549|ref|ZP_03009334.1| hypothetical protein BACCOP_01190 [Bacteroides coprocola DSM 17136]
 gi|189432793|gb|EDV01778.1| hypothetical protein BACCOP_01190 [Bacteroides coprocola DSM 17136]
          Length = 487

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 141/487 (28%), Positives = 235/487 (48%), Gaps = 49/487 (10%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKA---SLRYFF 54
           +   ++TI A++T     AI  IR+SG     + + I      K    RK    +  +  
Sbjct: 3   IQQTEDTICAIATAQG-GAIGTIRVSGAQAIAITDRIFTPISGKPLTERKPYTLTFGHIL 61

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
              G I+D+ L+ +F  P S+TGEDS E   HG   ++  +++ L K    R A PGE++
Sbjct: 62  SPAGEIIDEVLVSLFRVPHSYTGEDSVEISCHGSSYILQQVMQLLIK-NGCRAAGPGEYT 120

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    R++M  M G  S       +KL H+ S +E 
Sbjct: 121 QRAFLNGKMDLSQAEAVADLIASTSAATHRMAMNQMRGGFSRELSALREKLLHLTSLMEL 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ E+++     E+      ++  IS  +    +G  ++NG  + I+G +NAGKS+
Sbjct: 181 ELDFSDHEELEFADRSELEEIAQQIEQVISHLVDTFSVGNALKNGVPVAIVGETNAGKST 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL  ++ AIV+DI GTTRDV+   ++L G   +  DTAGIRET D +E  GI+R+F 
Sbjct: 241 LLNALLNEERAIVSDIHGTTRDVIEDTMNLGGVTFRFIDTAGIRETTDTIESLGIERSFQ 300

Query: 295 EVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY------------- 332
           ++E A+++L + +    +E         +   +    + +  K+DL              
Sbjct: 301 KLEQANIVLWVIDATCAEEQYHQLAEKILPRCQGKHLVIVLNKTDLLPLTEKSLSCSVTD 360

Query: 333 -----------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                                +     +S+   EGL  L  ++    +         + S
Sbjct: 361 TTASMHKPIDDLKAILPDLPEDACVISLSAKQKEGLSLLQKQLVDFAALPDLSQNDVVVS 420

Query: 376 HKRHLYHLSQTVRYLEMASLNE-KDCGLDIIAENLRLASVSLGKIT-GCVDVEQLLDIIF 433
           + RH   LS+ +  +             D+++++LR     L +I  G +  +++L  IF
Sbjct: 421 NIRHYEALSRALEAIHRVQDGLTMQLSGDLVSQDLRECLFHLAEIVGGEITNDEVLGNIF 480

Query: 434 SKFCIGK 440
             FCIGK
Sbjct: 481 KHFCIGK 487


>gi|75674297|ref|YP_316718.1| tRNA modification GTPase TrmE [Nitrobacter winogradskyi Nb-255]
 gi|123614357|sp|Q3SWH5|MNME_NITWN RecName: Full=tRNA modification GTPase mnmE
 gi|74419167|gb|ABA03366.1| tRNA modification GTPase trmE [Nitrobacter winogradskyi Nb-255]
          Length = 456

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 167/458 (36%), Positives = 248/458 (54%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  ++TIFA+S+G  PSAI+++R SG         +     P  R A         G  
Sbjct: 1   MHPREQTIFALSSGRPPSAIAVVRASGSQAGTALRKLAG-AIPAARTAKRVLLRDSVGEA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ FP+P S TGED AEFHVHG  AVVN ++  L+ + + R A PGEF+RRAFEN
Sbjct: 60  IDDAVILWFPAPASATGEDIAEFHVHGSRAVVNALIAALSSIDDARAAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL EAE L DLI ++T+ QRR ++  + G L      W  +L    + IEA +DF++
Sbjct: 120 GKIDLTEAEGLDDLIHADTDRQRRQALRQLQGLLGDRARGWRKELIDASALIEAGIDFAD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EEDV    ++  L  I  L+ +I   ++    GE +R+G  + I G  NAGKS+L N LA
Sbjct: 180 EEDVPEDLARPALEKIAQLRREIEQTLAASARGERLRDGLTVAIAGPPNAGKSTLLNRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIV+   GTTRD++ + LDL+GY V + DTAGIRETDD VE+EG++R    V  AD
Sbjct: 240 RREAAIVSPHAGTTRDIIEVYLDLDGYPVTLIDTAGIRETDDPVEQEGVRRARDRVAKAD 299

Query: 301 LILLLKE--INSKKEISFPKNIDFIFIGTKSDLYSTYTE----------------EYDHL 342
           L+L L +       +           I  K DL     +                 +   
Sbjct: 300 LVLWLSDDHGGEPDQTIRSGETSLWLIRNKIDLAGPENDGAKPGRFETKAGQSAPPWRFR 359

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           IS+  G+G+++L++ + +            + +  RH   L   V  L  A       G 
Sbjct: 360 ISASRGDGVDDLVSALTAFAEKLLGSSEAGVITRLRHRNILRDAVASLAKAET-LAGRGD 418

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++AE LR+A   +G++ G VD++ +LD +F +FCIGK
Sbjct: 419 ELVAEELRIAIHLMGRLLGRVDIDDILDSLFKEFCIGK 456


>gi|225848361|ref|YP_002728524.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644654|gb|ACN99704.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 447

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 163/451 (36%), Positives = 253/451 (56%), Gaps = 19/451 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILD 62
           +K+TI A +T  +PSA+ I+R+SG    ++ + I    ++   RKA       LDG +LD
Sbjct: 2   KKDTIVANATPLIPSAVGIVRISGEDALKIGKQIFTLPQEIQERKAYFGKILDLDGSVLD 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +GL I F +P+SFTGED  E + HG + V+  I+E +  +   RLANPGEF+ RAF NGK
Sbjct: 62  EGLFIYFKAPKSFTGEDVVEIYPHGSVPVIKKIIENVITLGG-RLANPGEFTYRAFLNGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AE++ADLIS++TE   + ++  + G+LS       + L ++ S IEA+++F E  
Sbjct: 121 IDLTQAEAIADLISAKTEKASKAAVRLLEGKLSEKINSLRETLLNLISLIEAEINFPE-- 178

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV+   S+ ++ ++L +K  I   +   K G +I+ G K+ I+G  N GKSSLFNA+   
Sbjct: 179 DVEEIDSQLIVENLLKVKKSIDKLVGSYKKGSLIKEGIKLAIVGRPNVGKSSLFNAMVGY 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + +IV+   GTTRD +   L ++   + + DTAGIRET + VEK GI+R+  ++E AD+I
Sbjct: 239 ERSIVSSYQGTTRDFIEETLKIKDIPIILLDTAGIRETAEYVEKLGIERSKQKIEEADII 298

Query: 303 LLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-----HLISSFTGEGL 351
           L + + +       KK     KN   I +  K+DL +   + ++        SS T +G+
Sbjct: 299 LFVIDGSQGFTDEDKKIYDEIKNKIHIIVINKADLITKPLDIFEKSDNIIYTSSVTFQGI 358

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC--GLDIIAENL 409
           ++L  KI  IL     +    I  + RH   L Q +  +E    N        +I+  +L
Sbjct: 359 KDLEEKIIEIL--GITETEDEIIINLRHYTLLKQAIEKIEKVVENIDFLIENKEILMLDL 416

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +     L +I G +  E +L  IFSKFCIGK
Sbjct: 417 QEVLNYLEEIVGHITTEDVLGNIFSKFCIGK 447


>gi|150392473|ref|YP_001322522.1| tRNA modification GTPase TrmE [Alkaliphilus metalliredigens QYMF]
 gi|166988167|sp|A6TXE5|MNME_ALKMQ RecName: Full=tRNA modification GTPase mnmE
 gi|149952335|gb|ABR50863.1| tRNA modification GTPase TrmE [Alkaliphilus metalliredigens QYMF]
          Length = 461

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 140/460 (30%), Positives = 235/460 (51%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF------PRKASLRYFFGLD- 57
            +TI A++T    + I I+R+SG     + + + + K+        PR+ +  +    + 
Sbjct: 4   DDTIAAIATAHGEAGIGIVRISGEKALHIIDQVFQSKQGKKLKDISPRRITYGHIIDTER 63

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ L+     P ++T ED  E + HGG+  V  ILE + +    R A+ GEF++RA
Sbjct: 64  NERIDEVLVSYMKGPHTYTTEDVVEINCHGGMIPVKRILELILR-KGARAADAGEFTKRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DL+S++T+M   +++  + G LS    +  D+L  + + IE  +D
Sbjct: 123 FLNGRIDLAQAEAVMDLVSAKTDMGFDVALNQLEGSLSKRVKKVKDELLDMLAHIEVSID 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FS+ EDV   +   +L   + ++  I   +     G+I+R G   VI+G  N GKSSL N
Sbjct: 183 FSD-EDVDEVTLDLLLKQSMEIEKKIKVLLETADTGKILREGLNTVIVGKPNVGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL K+  AIVT++PGTTRD +    ++ G  + + DTAGIRET+DIVEK G++R+     
Sbjct: 242 ALLKESRAIVTEVPGTTRDAIEEHFNIRGIPLNLIDTAGIRETEDIVEKIGVERSKAFFN 301

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            ADLI+L+ + +        + +   K+   + +  K+DL S    +    I        
Sbjct: 302 KADLIILMLDASRELTPEDLQIMELVKSKKALILVNKTDLTSQIDYDRIIEIVGEKKVIK 361

Query: 352 EELINKIKS----------ILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDC 400
             LI +             +   + +     + ++ RH   L + +  L +     ++  
Sbjct: 362 ISLIEESGLEEVEEALVEIVYKGETRAKDSLLVTNVRHKNALERALESLTDGVQAIKQKM 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD +  +++ A  +LG+ITG    E LLD IF  FCIGK
Sbjct: 422 PLDFVEVDVKNAWDALGEITGDTVGEDLLDHIFQNFCIGK 461


>gi|256841233|ref|ZP_05546740.1| tRNA modification GTPase TrmE [Parabacteroides sp. D13]
 gi|256737076|gb|EEU50403.1| tRNA modification GTPase TrmE [Parabacteroides sp. D13]
          Length = 461

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 151/460 (32%), Positives = 237/460 (51%), Gaps = 27/460 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-------LRYFFGLDGR 59
           TI A+ST      I++IR+SGP  F++C+ I + KK     ++            G +  
Sbjct: 3   TICAISTAPGVGGIAVIRVSGPDTFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  VF +P SFTGED+ E   HG   +   IL+ L      R+A PGE+++RAF 
Sbjct: 63  TIDEVIAAVFCAPHSFTGEDTVEITCHGSTYIQQQILQSLI-SSGCRIAQPGEYTQRAFM 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S +  Q RL++  M G  S    +  ++L H  S +E +LDFS
Sbjct: 122 NGKMDLSQAEAVADLIASTSAGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + E+++     E+      ++  IS       +G  I+NG  + I+G +NAGKS+L NAL
Sbjct: 182 DHEELEFADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIV+DI GTTRDV+   +++ G L +  DTAGIRET D +E  GI+R+F  ++ A
Sbjct: 242 LNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETSDTIEALGIERSFKALDQA 301

Query: 300 DLILLLKEINSK--------KEIS-FPKNIDFIFIGTKSDL--------YSTYTEEYDHL 342
            +++L+ ++           +EI+    N   I    K D+        +S  TE +  +
Sbjct: 302 QIVILMYDLTRDLKDFEAFYQEIAPRLTNKSVILAMNKCDVLPASSLPTFSFPTEGWHQI 361

Query: 343 ISSFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DC 400
             S  G+  + EL   +  + S         I ++ RH   L+  +  +           
Sbjct: 362 AISAKGKLHIAELQQLLTEVSSIPTLHQSDIIVTNARHFEALTHALEAIHRVQEGLNSSL 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D I+++LR     L  I G V  +Q+L  IF  FCIGK
Sbjct: 422 SGDFISQDLRECIFHLSDIVGEVTTDQVLGNIFQHFCIGK 461


>gi|20809125|ref|NP_624296.1| tRNA modification GTPase TrmE [Thermoanaerobacter tengcongensis
           MB4]
 gi|25009498|sp|Q8R6K8|MNME_THETN RecName: Full=tRNA modification GTPase mnmE
 gi|20517805|gb|AAM25900.1| predicted GTPase [Thermoanaerobacter tengcongensis MB4]
          Length = 460

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 156/461 (33%), Positives = 245/461 (53%), Gaps = 26/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL----- 56
           E +TI A+ST    + I I+R+SG    ++   I +  +KK      S    +G      
Sbjct: 2   EFDTIAAISTFPGEAGIGIVRISGDEALEIISKIFRPFRKKDIKSVKSHTIHYGHIVDPE 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G + D+ L+ V   P ++T ED  E + HGGI V + ILE + K    RLA PGEF++R
Sbjct: 62  TGEVYDEVLVTVMRKPNTYTREDVVEINCHGGIVVSSKILELVLK-HGARLAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ D+I+S+T +  R + + ++G L        +K+  + S + A +
Sbjct: 121 AFLNGRIDLSQAEAVIDIITSKTMLANRYAQKQLAGVLGQKMKDLKNKIMELLSHLLALI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF EE+ V+    +E+      + NDI   I+  + G IIR G K  I+G  N GKSSL 
Sbjct: 181 DFPEED-VEELEREEIKRRAKDILNDIEYLIASSESGRIIREGLKTAIIGKPNVGKSSLL 239

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL K++ AIVTDIPGTTRDV+   ++++G  +K+ DTAGIR TD++VEK G++++   +
Sbjct: 240 NALLKQNRAIVTDIPGTTRDVIEEYMNIKGIPIKLIDTAGIRHTDELVEKIGVEKSKEVL 299

Query: 297 ENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE---------YDH 341
             ADLIL + + +        +        + IF+  K DL     EE            
Sbjct: 300 AEADLILFVLDASRDLTKEDYEIFDILSGKNIIFVLNKVDLPKKIDEEELKKLVGNGIIV 359

Query: 342 LISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
            +S+    GL++L ++I ++    K       I ++ RH   L    +++E      EK 
Sbjct: 360 EVSTVERTGLDKLESEIYNLVFKGKVSATEEEIITNARHREVLINAKKHMESVIEAIEKG 419

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D+I  ++  A   +GKITG    E +++ IF +FC+GK
Sbjct: 420 YSEDLITIDVNGALNEIGKITGETATEDVINQIFERFCVGK 460


>gi|205422352|sp|Q1Q7V4|MNME_PSYCK RecName: Full=tRNA modification GTPase mnmE
          Length = 478

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 156/463 (33%), Positives = 244/463 (52%), Gaps = 32/463 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      + +IRLSG   + +   +  K    PR AS   F+  DG ++D+GL+
Sbjct: 19  TIAAIATPLGRGGVGVIRLSGTHAYSIACTLTGKSAFKPRMASFCRFYQADGTVIDEGLV 78

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F  P SFTGED  E   HGG+ + N +L  + ++   + A+ GEFS RAF+N K+DL+
Sbjct: 79  LYFKGPHSFTGEDVIELQGHGGMILQNQLLARVFEL-GAKQASAGEFSYRAFDNDKLDLV 137

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE++AD I + +      ++  +SGE S    Q +++L H+R  +EA +DF +EEDV  
Sbjct: 138 QAEAIADAIDATSAAAASSAIRSLSGEFSQKINQLLEQLIHLRLHVEAAIDFPDEEDVDF 197

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   +   +   +  I   ++  K G+++R+G  +V+ G  NAGKSSL N LA ++ AI
Sbjct: 198 LSDGVIQGKLEQTQEKIQQVLATAKQGQLLRDGIHVVLAGRPNAGKSSLLNRLAGQERAI 257

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTD+ GTTRD L   + L G  + ++DTAG+RET+D VE+ GI+R    +  AD++L++ 
Sbjct: 258 VTDVAGTTRDTLQETVVLNGLTLHLTDTAGLRETEDTVERIGIERARTAIAQADMLLMVY 317

Query: 307 EINSKKEI-------------SFPKNIDFIFIGTKSDLYSTYTEEYD------------- 340
           ++    E                P+    + I  KSDL +  + +               
Sbjct: 318 DVTRDLEEESTPLQLAEQLFGELPEAKRLLIIANKSDLLNNNSSKEITSISQQEIHNRGY 377

Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               +S  TG G+++L+  +       F     S+ +  RHL  L +T  YL  A     
Sbjct: 378 EQVNVSCETGAGIDDLVETL--CAKVGFHPPENSLIARTRHLDALRRTAEYLAEAHEQLT 435

Query: 399 DC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                +++AE+LR A  SLG+ITG    + LL  IF  FCIGK
Sbjct: 436 VFKAGELVAESLRQAQHSLGEITGEFSADDLLGKIFGSFCIGK 478


>gi|237736115|ref|ZP_04566596.1| thiophene and furan oxidation protein ThdF [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421826|gb|EEO36873.1| thiophene and furan oxidation protein ThdF [Fusobacterium
           mortiferum ATCC 9817]
          Length = 456

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 144/456 (31%), Positives = 238/456 (52%), Gaps = 22/456 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR- 59
            +TI A+ST      I I+R+SG   F + + I K K        R  S+ Y    DG  
Sbjct: 3   FDTIAAISTPRGEGGIGIVRISGSDAFTILKKIFKPKSGKKIEELRNFSINYGHIYDGEQ 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ ++ +  +P ++T E+  E + HGG  +   +LE + K    R A  GEF+RRAF 
Sbjct: 63  LIDEVMVSIMKAPHTYTKENIVEINCHGGFVITEKLLETVLK-YGARHAEIGEFTRRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ 
Sbjct: 122 NGRIDLTQAEAIIDIIHGKTEKSVSLSLNQLRGDLKEQIEHLKKLILDVAAHINVVLDYP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E E + +   + ++ ++  + +     I     G++I+ G K  I+G  N GKSSL N++
Sbjct: 182 E-EGIDDPLPENLVGNLQEVVDTTDRLIKSYDKGKMIKEGIKTAIVGKPNVGKSSLLNSV 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            +++ AIVT IPGTTRDV+   ++L+G  + + DTAGIR+TDDIVE  G++++   +ENA
Sbjct: 241 LREERAIVTHIPGTTRDVIEEVVNLKGIPLILVDTAGIRKTDDIVENIGVEKSKKMIENA 300

Query: 300 DLILLLKEINSKKEISFPKNI------DFIFIGTKS------DLYSTYTEEYDHLISSFT 347
           DLIL + + + + E    K          I I  K       DL      +    IS+  
Sbjct: 301 DLILFVIDGSRELEEEDIKIHESINSEKVIGILNKIDMERKVDLSKLTKIKNWIEISAMK 360

Query: 348 GEGLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRYLE-MASLNEKDCGLDI 404
             G++E+ +KI   + +   +        ++ RH   L +T +Y+E +         +D+
Sbjct: 361 NIGIDEMEDKIYHHIVDGNVEDSSQKITITNVRHKSALEKTKQYVENIFDTIHAGLPMDL 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 421 MAVDIKGALNSLSEVTGEISSEDLLDHIFSNFCVGK 456


>gi|154503056|ref|ZP_02040116.1| hypothetical protein RUMGNA_00878 [Ruminococcus gnavus ATCC 29149]
 gi|153796297|gb|EDN78717.1| hypothetical protein RUMGNA_00878 [Ruminococcus gnavus ATCC 29149]
          Length = 458

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 149/459 (32%), Positives = 237/459 (51%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           +K+TI A+STG   S I I+R+SG   F + + I K K+   +  S    +G        
Sbjct: 2   KKDTIAAISTGMTNSGIGIVRISGEEAFAIIDRIYKGKEQLSQAESHTIHYGFIKDREET 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P +FTGED+ E + HGG  VV  +LE + K    R A PGEF++RAF N
Sbjct: 62  IDEVLVSVMRAPRTFTGEDTVEINCHGGTFVVRKVLETVIK-NGARPAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ D+I+S+ E   + SM  + G +     +   ++ +  +FIE  LD  E
Sbjct: 121 GKMDLSQAEAVIDVITSQNEYALKSSMSQLKGSVKRKIEEMRKEILYHTAFIETALDDPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              V  +  + +      +  ++   I     G I++ G + VI+G  NAGKSSL N L+
Sbjct: 181 HISVDGY-GETLQTVTEGILRELEDLIRSSDDGRILKEGIQTVIVGKPNAGKSSLLNVLS 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + L+G  + I DTAGIR+T+D++EK G+++     ++AD
Sbjct: 240 GRERAIVTDIEGTTRDVLEEQIHLQGLSLNIIDTAGIRDTEDVIEKMGVEKAKEYAKSAD 299

Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----------YDHLI 343
           L++ + +       N +K ++   +   I +  K+DL +  ++E               I
Sbjct: 300 LVIYVVDASRSLDENDQKILNLVLDKKAIILLNKTDLETVVSKEMLAEQLLGREIPMIEI 359

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCG 401
           S+    G++EL   ++ + L            ++ R    L      L       E +  
Sbjct: 360 SAKEELGIQELEKTLEKMFLKGSLSFNDEIYITNIRQKAALQSARESLHKVIESIENEMP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 420 EDFYSIDLMDAYESLGSITGETIGEDLVNEIFSKFCMGK 458


>gi|218263821|ref|ZP_03477797.1| hypothetical protein PRABACTJOHN_03487 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222494|gb|EEC95144.1| hypothetical protein PRABACTJOHN_03487 [Parabacteroides johnsonii
           DSM 18315]
          Length = 460

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 150/460 (32%), Positives = 234/460 (50%), Gaps = 25/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-----KKKKPFPRKASLRYFFGL-DG 58
           ++TI AVST      I++IR+SGP    +C  I       K        +LRY     + 
Sbjct: 2   EDTICAVSTAPGAGGIAVIRISGPEAIAICNTIFVPRITGKDLLSQEAYTLRYGSIRRNK 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D  L+ +F +P SFTGED+ E   HG + +   I++ L +    R A PGE+++RAF
Sbjct: 62  ELIDDVLVALFRAPHSFTGEDTVEITCHGSVYIQQQIMQLLIES-GCRSALPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +  Q RL++  M G  S       ++L HI S +E +LDF
Sbjct: 121 MNGKMDLSQAEAVADLIASTSAGQHRLALNQMRGGFSHELKNLREQLLHITSLMELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+ E+++     E+      ++  IS   +   +G  I+NG  + I+G +NAGKS+L N 
Sbjct: 181 SDHEELEFADRSELSTLATHIETVISRLANSFSVGNAIKNGVPVAIIGETNAGKSTLLNV 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRD++   + L G   +  DTAGIRET D +E  GI+RTF +++ 
Sbjct: 241 LLNEDKAIVSDIHGTTRDIIEDTVSLGGITFRFIDTAGIRETHDAIESIGIERTFQKLDQ 300

Query: 299 ADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLY--------STYTEEYDH 341
           AD++L + +           S+K +   K    I +  K+DL                  
Sbjct: 301 ADIVLWMIDAADASLQIAQLSEKILPRSKGKQLILVFNKADLLTDRQFKTTDLPDNVQSI 360

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDC 400
            IS+   E ++EL + +              I ++ RH   L+  +  +         + 
Sbjct: 361 FISAKKREHIDELQDLLIQAAHIPSLSSNDVIVTNIRHYEALTHALDSIHRVQEGLSANL 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D I+++LR     L  I G V  +Q+L  IF +FCIGK
Sbjct: 421 SGDFISQDLRECIFHLSDIVGEVTTDQVLGNIFERFCIGK 460


>gi|253581093|ref|ZP_04858353.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847629|gb|EES75599.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 474

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 151/456 (33%), Positives = 236/456 (51%), Gaps = 24/456 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-----KASLRYFFGLDGR-I 60
           TI A+ST    S I IIR+SG +   V   I + K    +       ++ Y +  DG  +
Sbjct: 21  TIAAISTAMSASGIGIIRISGENAMDVISRIYRSKGGKKKIKEVPTHTIHYGYIYDGEEL 80

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+++  +P +FTGED+ E   HGG+  +  +L+ + K     +A PGEF++RAF N
Sbjct: 81  IDEVLVMIMHAPRTFTGEDTVEIDCHGGVYAMQRVLDTVLK-NGAEIAEPGEFTKRAFLN 139

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ D+I ++ E   R SM+ + G +        +KL +  ++IE+ LD  E
Sbjct: 140 GRMDLSQAEAVMDVIQAKNEYALRSSMDQLRGSVQKAIRDIREKLIYHIAYIESALDDPE 199

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              +  +  +E+L  +   + ++   +     G++I+ G + VILG  NAGKSSL N L 
Sbjct: 200 HISLDGYP-QELLEVVDNEQKEVKRLLKTSSDGKMIQEGIQTVILGKPNAGKSSLLNLLI 258

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRD+L   + L G  +KI DTAGIRET DIVEK G+ R     + AD
Sbjct: 259 GENRAIVTDIAGTTRDILEEYITLHGISLKIIDTAGIRETKDIVEKIGVDRAREMAQKAD 318

Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------DHLISSF 346
           LIL + +       N ++ +        I +  K+DL      E            IS+ 
Sbjct: 319 LILYVVDSSVPLDENDEEIMEMLTGKKAIILYNKTDLQPEIQPEILKEKTGHPVIPISAK 378

Query: 347 TGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDI 404
             +G+ EL  +IK +              ++ RH   L +  R L++  +  E     D 
Sbjct: 379 EEKGITELEEQIKDMFFGGEISFNDEVYITNARHKAALEEADRSLDLVRNSIEMGMPEDF 438

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +L  A  +LGKI G    E L++ IFSKFC+GK
Sbjct: 439 FSIDLMNAYENLGKILGESVGEDLVNEIFSKFCMGK 474


>gi|119508848|ref|ZP_01628000.1| tRNA modification GTPase [Nodularia spumigena CCY9414]
 gi|119466377|gb|EAW47262.1| tRNA modification GTPase [Nodularia spumigena CCY9414]
          Length = 463

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/458 (35%), Positives = 244/458 (53%), Gaps = 28/458 (6%)

Query: 7   TIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
           TI A++T       ++SI+R+SG     + + +           S R  +G         
Sbjct: 10  TIAAIATAVIPQQGSVSIVRVSGSQAMAIAQALF-SAPGQQVWESHRILYGHIRHPQTQA 68

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ RAF 
Sbjct: 69  LVDEALLLIMQAPRSYTREDVVEFHCHGGIMAVQQVLQ-LCLEQGARLAQPGEFTLRAFL 127

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AES+ADL+ + +    + ++ G+ G+L+S   Q       I + IEA +DF 
Sbjct: 128 NGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLASPIRQLRANCLDILAEIEARIDFE 187

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  D+     K +++DI  +  +IS  ++    GE++R G K+ I+G  N GKSSL NA 
Sbjct: 188 E--DLPPLDHKGIISDIDHVAAEISKFLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAW 245

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIRET D VEK G++R+      A
Sbjct: 246 SQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETVDQVEKIGVERSRRAANAA 305

Query: 300 DLILLLKEIN-----SKKEI-SFPKNIDFIFIGTKSDLYSTY---TEEYDHLI------S 344
           DL+LL  + +     S +EI    ++   I +  K DL  T    + +Y H I       
Sbjct: 306 DLVLLTIDASAGWTESDQEIYDQVQHRPLILVINKIDLVETASIDSGKYPHNIHQIVTTI 365

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402
           +   +G++ L   I +I+   K +     +  ++R    L+Q    LE   +   D   L
Sbjct: 366 AAKNQGIDALETAILNIVQTGKVQAADMDLAINQRQAAALTQAKISLEQVQVTITDQLPL 425

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 426 DFWTIDLRGAIQALGEITGEQVTESVLDRIFSRFCIGK 463


>gi|304439121|ref|ZP_07399040.1| tRNA modification GTPase TrmE [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372480|gb|EFM26067.1| tRNA modification GTPase TrmE [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 457

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 153/458 (33%), Positives = 254/458 (55%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK------KKPFPRKASLRYFFGLDG 58
           KETI A+ST    + I I+R+SG    ++ + + +        +   R  S  +    +G
Sbjct: 2   KETIAAISTATGEAGIGIVRMSGEDSVEIADKVFRHIGQKNLTEIKNRMMSYGHIIDENG 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ L++   +P ++T E+  E + HGGI  V  +L  L      R+A  GEF++RAF
Sbjct: 62  KVIDEVLIVKMMAPNTYTRENMVEIYTHGGIISVRRVLN-LLLDNGARIAEAGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ D+I ++T+     S++ + G L+ +  +  D++T +   I A++DF
Sbjct: 121 LNGRLDLSQAEAVIDIIKAKTDESFDQSIKQLEGSLTGIITEISDEVTKMMGIIIANIDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+ +  + +LND   +K +I++ I     G ++R+G   VILG  N GKSSL NA
Sbjct: 181 PE-DDVEEYQYETLLNDANKVKENINTLIEGSNRGRLLRDGINTVILGKPNVGKSSLLNA 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           + + + AIVTDIPGTTRD++   ++L+G L+KI+DTAGIRET+D VE  G+ R    +E 
Sbjct: 240 MLRYEKAIVTDIPGTTRDIIEDYVNLDGILLKITDTAGIRETEDKVEAIGVSRAVKSIEG 299

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLIS 344
           ADLI+ + +       N ++ +   +    I +  K+DL S  +E+         D++  
Sbjct: 300 ADLIIAIFDGSEKFDENDEEILKLLEGKKSIVLVNKADLESKNSEDELKSFFGNRDYMNV 359

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           S     + ++ NKIK +      K       ++ RH+  L +  ++++ A    E    L
Sbjct: 360 SIKKGTILDIENKIKDMFFSGNLKAKEEFYINNLRHVRALKEATKFIDSAIEGLETREFL 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D I  +LR A   LG ITG    E +LD +FS+FCIGK
Sbjct: 420 DCIEVDLRGALDELGNITGETTTEDILDKVFSEFCIGK 457


>gi|13786071|gb|AAK39555.1| mitochondrial GTP binding protein 1 [Homo sapiens]
 gi|14042398|dbj|BAB55228.1| unnamed protein product [Homo sapiens]
 gi|16877978|gb|AAH17207.1| GTP binding protein 3 (mitochondrial) [Homo sapiens]
 gi|19335745|gb|AAL85493.1| GTP-binding protein isoform V [Homo sapiens]
 gi|119605003|gb|EAW84597.1| GTP binding protein 3 (mitochondrial), isoform CRA_a [Homo sapiens]
 gi|158257290|dbj|BAF84618.1| unnamed protein product [Homo sapiens]
          Length = 492

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 172/461 (37%), Positives = 253/461 (54%), Gaps = 30/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R    +E ADLIL 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 334

Query: 305 LKEINSKKEISFPK-----------------NIDFIFIGTKSDLYSTYTEEYDHLI---- 343
           + + +     S                    +   + +  KSDL S         +    
Sbjct: 335 MLDASDLASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHL 394

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKD 399
             S  TGEGL+ L+  ++  L+           + +  RH +HL   +  L       + 
Sbjct: 395 LLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK---QS 451

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 452 KDLALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 492


>gi|93007296|ref|YP_581733.1| tRNA modification GTPase TrmE [Psychrobacter cryohalolentis K5]
 gi|92394974|gb|ABE76249.1| tRNA modification GTPase trmE [Psychrobacter cryohalolentis K5]
          Length = 487

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 156/463 (33%), Positives = 244/463 (52%), Gaps = 32/463 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      + +IRLSG   + +   +  K    PR AS   F+  DG ++D+GL+
Sbjct: 28  TIAAIATPLGRGGVGVIRLSGTHAYSIACTLTGKSAFKPRMASFCRFYQADGTVIDEGLV 87

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F  P SFTGED  E   HGG+ + N +L  + ++   + A+ GEFS RAF+N K+DL+
Sbjct: 88  LYFKGPHSFTGEDVIELQGHGGMILQNQLLARVFEL-GAKQASAGEFSYRAFDNDKLDLV 146

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE++AD I + +      ++  +SGE S    Q +++L H+R  +EA +DF +EEDV  
Sbjct: 147 QAEAIADAIDATSAAAASSAIRSLSGEFSQKINQLLEQLIHLRLHVEAAIDFPDEEDVDF 206

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   +   +   +  I   ++  K G+++R+G  +V+ G  NAGKSSL N LA ++ AI
Sbjct: 207 LSDGVIQGKLEQTQEKIQQVLATAKQGQLLRDGIHVVLAGRPNAGKSSLLNRLAGQERAI 266

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTD+ GTTRD L   + L G  + ++DTAG+RET+D VE+ GI+R    +  AD++L++ 
Sbjct: 267 VTDVAGTTRDTLQETVVLNGLTLHLTDTAGLRETEDTVERIGIERARTAIAQADMLLMVY 326

Query: 307 EINSKKEI-------------SFPKNIDFIFIGTKSDLYSTYTEEYD------------- 340
           ++    E                P+    + I  KSDL +  + +               
Sbjct: 327 DVTRDLEEESTPLQLAEQLFGELPEAKRLLIIANKSDLLNNNSSKEITSISQQEIHNRGY 386

Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               +S  TG G+++L+  +       F     S+ +  RHL  L +T  YL  A     
Sbjct: 387 EQVNVSCETGAGIDDLVETL--CAKVGFHPPENSLIARTRHLDALRRTAEYLAEAHEQLT 444

Query: 399 DC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                +++AE+LR A  SLG+ITG    + LL  IF  FCIGK
Sbjct: 445 VFKAGELVAESLRQAQHSLGEITGEFSADDLLGKIFGSFCIGK 487


>gi|317496611|ref|ZP_07954958.1| tRNA modification GTPase TrmE [Gemella moribillum M424]
 gi|316913276|gb|EFV34775.1| tRNA modification GTPase TrmE [Gemella moribillum M424]
          Length = 460

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 142/460 (30%), Positives = 240/460 (52%), Gaps = 25/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFF-----GLD 57
            ETI A+ST     AI I+RLSG   F + + I +  K +      +    +        
Sbjct: 2   SETICAISTALGEGAIGIVRLSGDEAFSIADKIVRLPKGRTVESLPTHTINYANIIDPKT 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +++ +L+    P ++T ED  E + HGGI  +  +L  L      R+A PGEF++RA
Sbjct: 62  EEKIEEIMLVKMVGPRTYTTEDVVEINCHGGIITIQKVL-ALCLEYGARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++   M G LS+L  +   ++  I + +E ++D
Sbjct: 121 FLNGRIDLTQAEAVIDFIKSKTDEASQIANNQMQGRLSTLIKRLRAEILDILAVVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +D++  ++K +L     +KN + + +   K G+II+ G    I+G  N GKSSL N
Sbjct: 181 YPEYDDLEIETTKTILEKSTSIKNSLEALLETSKQGKIIKEGINTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDVL   ++++G  +K+ DTAGIRET+D+VEK G++R+   +E
Sbjct: 241 NLLQENKAIVTDIAGTTRDVLEEHVNIKGVPIKLIDTAGIRETEDVVEKIGVERSKEALE 300

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHL 342
            ADL+L L         + ++ +   +    I I  K DL +    E             
Sbjct: 301 KADLVLFLLNSSEELTDDDRELLKLTEGKTTIIILNKLDLETKIDIEEIEKLTYNHPIIK 360

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYL-EMASLNEKDC 400
            S  T +G++EL   I+ +      +    +  S+ R +  + Q +  L E     E   
Sbjct: 361 TSMTTYKGIDELEKNIRDLFFKGAARPKDATYLSNTRQINLIQQALVSLNEAIKAAEMGL 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +   A   LG++ G    ++L++ +FS+FC+GK
Sbjct: 421 EVDMVLIDYTNAFNLLGEVIGENSGDELINELFSRFCLGK 460


>gi|330827243|ref|YP_004390546.1| tRNA modification GTPase mnmE [Alicycliphilus denitrificans K601]
 gi|329312615|gb|AEB87030.1| tRNA modification GTPase mnmE [Alicycliphilus denitrificans K601]
          Length = 465

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 155/467 (33%), Positives = 238/467 (50%), Gaps = 30/467 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +   ++ I A++T     A+ I+R+SG       + +  +    PR+A    F    GR 
Sbjct: 2   LARHQDPIAAIATAPGRGAVGIVRVSGRGLAPFVQGLLGRSL-QPRQAHYLPFPDAAGRS 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL-----RLANPGEFSR 115
           +D+GL + FP+P S+TGED  E   HGG  V+  +L    +         RLA PGEF+ 
Sbjct: 61  IDQGLALFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQAVLPRLRLAEPGEFTE 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   +SG  S       D L H+R  +EA 
Sbjct: 121 RAFLNDKLDLAQAEAIADLIDASTEAAARSAGRSLSGAFSQEIHGLRDALVHLRMLVEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF E E++      +    +  L+  +++ + +   G ++R G K+VI G  NAGKSSL
Sbjct: 181 LDFPE-EEIDFLRKADARGQLSNLQQTLAAVMQRASQGALLREGIKVVIAGQPNAGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RE+ D VE+ GI R + E
Sbjct: 240 LNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHIIDTAGLRESADEVERIGIARAWDE 299

Query: 296 VENADLILLLKE---INSKKEIS------------FPKNIDFIFIGTKSD-----LYSTY 335
           +  AD +L L +   +++ + I+              +++  I +  K+D       +  
Sbjct: 300 ITQADAVLFLHDLTRLDAPEYIAADALIASTLVQKLSESVPVIDVWNKTDAAARPAPAAT 359

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMA 393
                  +S+ TG+GL+ L  ++  +   +         +  RH+  L     +L    A
Sbjct: 360 AGRAAVQLSARTGQGLDALRRELLRVAGWQ-SAAEGVYIARARHIEALRAVDAHLMEAAA 418

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L      LD++AE LRLA  +L  ITG    + LL +IFS FCIGK
Sbjct: 419 QLESTGPALDLLAEELRLAQNALNAITGEFTSDDLLGVIFSSFCIGK 465


>gi|317131002|ref|YP_004097284.1| tRNA modification GTPase TrmE [Bacillus cellulosilyticus DSM 2522]
 gi|315475950|gb|ADU32553.1| tRNA modification GTPase TrmE [Bacillus cellulosilyticus DSM 2522]
          Length = 458

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 146/459 (31%), Positives = 238/459 (51%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI+I+R+SG     + + I + KK      +    +G        
Sbjct: 2   EMDTIAAISTPMGEGAIAIVRISGDEAVNIADLIYQGKKSLKEVETHTINYGYIVDPETN 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +++ ++ V  +P++FT E+  E + HGGI  VN IL+ L      RLA PGEF++RAF
Sbjct: 62  DKIEEVMVSVLLAPKTFTKENIIEINCHGGIISVNRILQ-LIISHGARLAEPGEFTKRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE + DLI ++T+    ++M  + G+LS    +    L    + +E ++D+
Sbjct: 121 LNGRIDLSQAEGVIDLIRAKTDRAMNVAMSQLEGKLSKRIQKSRQDLLETVAHVEVNIDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D +  +   +      +K DI + +   + G+I+R+G   VI+G  N GKSSL N 
Sbjct: 181 PEY-DAEEMTLALLKEKAHDVKADIENLLQTAQQGKILRDGLSTVIIGRPNVGKSSLLNN 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L   + AIVT+I GTTRDV+   +++ G  +++ DTAGIRETDD+VEK G++R+   V +
Sbjct: 240 LVHDNKAIVTEIAGTTRDVIEEYVNVRGVPLRLLDTAGIRETDDVVEKIGVERSRKVVGD 299

Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY---------TEEYDHLI 343
           A+L+LL+   N       ++     K  + I I  K+DL              E      
Sbjct: 300 AELVLLVLNYNEELTESDEELFHISKGKERIIIINKTDLERKINMERVKQLANEAPIVST 359

Query: 344 SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S    EG++EL   IK +      +    +  S+ RH+  L + +R + E     +    
Sbjct: 360 SLIKDEGVDELEEAIKVLFFQGDIETTDLTYVSNTRHITLLQEALRSVSEALEAIDAGLP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D+I  ++      LG++ G    E L+D +FS+FC+GK
Sbjct: 420 IDMIQIDITKTWELLGEVIGESVHESLIDQLFSQFCLGK 458


>gi|209524294|ref|ZP_03272844.1| tRNA modification GTPase TrmE [Arthrospira maxima CS-328]
 gi|209495385|gb|EDZ95690.1| tRNA modification GTPase TrmE [Arthrospira maxima CS-328]
          Length = 469

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 148/470 (31%), Positives = 243/470 (51%), Gaps = 34/470 (7%)

Query: 1   MNHEKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--- 55
           ++ + ETI A++T       +I I+R+SG     + + + K     P  +S R  +G   
Sbjct: 4   ISTKTETIAAIATAIVPQQGSIGIVRMSGSEAVAIAKTLFKAPGNQPW-SSHRILYGYIH 62

Query: 56  --LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
                +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF
Sbjct: 63  HPHTQQLVDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQ-LCLQAGARLATPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           + RAF NG++DL +AES+A+L+ +++      ++ G+ G+L++           I + IE
Sbjct: 122 TLRAFLNGRLDLTQAESVAELVGAKSPQAASAALAGLRGKLAAPIHHLRSLCLDILAEIE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF E  D+   +  E+++ +  +   ++  +     GE++R G K+ I+G  N GKS
Sbjct: 182 ARVDFEE--DLPPLNESEIIHQLQEVLQQLTDILDTADRGELLRTGLKVAIVGRPNVGKS 239

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NA ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIR++DD VE+ G++R+ 
Sbjct: 240 SLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRKSDDKVEQIGVERSQ 299

Query: 294 LEVENADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSD---------LYSTYTEE 338
           +  ++ADL+L   +       ++ EI    KN   I +  KSD         L  +   +
Sbjct: 300 IAAQSADLVLFTLDCENGWTEAENEIYQQVKNRPIIIVMNKSDRLSSAQLENLRQSIINQ 359

Query: 339 YDHLISSFT------GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            D   S          +G+ +L   I + +     +        ++R    L++    LE
Sbjct: 360 LDIKPSLIIATAATLNQGITDLEESILNAVHTENLQSANLEFAINQRQAAALTRAKIALE 419

Query: 392 MASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                  D    D    +LR A  +LG++TG    E +LD IFS+FCIGK
Sbjct: 420 QVENTISDRLPFDFWTIDLRGAIHALGEVTGEEVTESVLDRIFSRFCIGK 469


>gi|257127029|ref|YP_003165143.1| tRNA modification GTPase TrmE [Leptotrichia buccalis C-1013-b]
 gi|257050968|gb|ACV40152.1| tRNA modification GTPase TrmE [Leptotrichia buccalis C-1013-b]
          Length = 455

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 149/455 (32%), Positives = 239/455 (52%), Gaps = 21/455 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR--YFFGLDGR-IL 61
            +TI A+ST      I+IIR+SG   F++ + I  KK P       +  Y F  DG+  +
Sbjct: 3   FDTIAAISTPKGEGGIAIIRISGDKSFEILDKIFIKKNPNADLGFYKLNYGFIKDGKKTI 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ + +   +P S+T ED  E + HGG  V   +LE L      R A  GEF++RAF NG
Sbjct: 63  DEVMAVRLKAPRSYTCEDIVEINCHGGTLVSEKVLE-LVLRNGARHAESGEFTKRAFMNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS++ + G+L     ++   L  I + +   LD+ E 
Sbjct: 122 RIDLSQAEAVMDIIQGKTEKSVSLSLDQLRGDLRDKVNEFKKALLDITAHVNVVLDYPE- 180

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E + +    E+ +++  +  + +  I     G+ I+ G K VI+G  N GKS+L NAL  
Sbjct: 181 EGIDDPLPVELRDNLEKVYEEANRLIDSYNTGKKIKEGIKTVIVGKPNVGKSTLLNALLH 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVT I GTTRDV+   ++++G  + + DTAGIR+TDDIVE  G++++   +E ADL
Sbjct: 241 EERAIVTHIAGTTRDVIEEIINIKGIPLVLVDTAGIRKTDDIVENIGVEKSKQFIEKADL 300

Query: 302 ILLLKEINSKKEISF--------PKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTG 348
           +LL+ + + K E             N   I +  K DL        Y  E    IS+   
Sbjct: 301 VLLVLDASKKLETEDIEVITKIKENNKKVIVLLNKIDLNKKINLEGYNLENIVEISAKDN 360

Query: 349 EGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCGLDII 405
            G+E++  KI S +  +         I ++ RH   L +T   +  +    +    +D+I
Sbjct: 361 IGIEDMQEKIYSYIVEEDVENSSEKLIITNIRHKTALEKTKDAIRNIFETIDMGLPMDLI 420

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +L+ A  SL +ITG +  E +LD +F+ FC+GK
Sbjct: 421 SVDLKEALDSLSEITGEISSEDILDHVFANFCVGK 455


>gi|254295495|ref|YP_003061518.1| tRNA modification GTPase TrmE [Hirschia baltica ATCC 49814]
 gi|254044026|gb|ACT60821.1| tRNA modification GTPase TrmE [Hirschia baltica ATCC 49814]
          Length = 454

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 155/450 (34%), Positives = 243/450 (54%), Gaps = 16/450 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI----LD 62
           TI A+++ +  + +S+IRLSG    ++ + +  +K P  RK  +R  F          LD
Sbjct: 5   TICALASASGKAGVSVIRLSGSKAGEILQLLTAQKLPSRRKLVIRLLFHPSDSAKRDQLD 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+   P P SFTGED  EFH+HGG A+V  +++        RLA PGE++RRAFENG+
Sbjct: 65  EALVAFMPGPNSFTGEDVVEFHLHGGTAIVASVIDACLATKLCRLAEPGEYTRRAFENGR 124

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ DLI +ET+ QRR +M+   G   +    W   L    + ++A +DF +E+
Sbjct: 125 MDLTKAEAIGDLIDAETDAQRRQAMQQYDGAFHAQCLNWRSGLIDAMASLDAAIDFPDED 184

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV +         +  L   I   +     G  +R+G+KI I+G  NAGKS+L NAL  +
Sbjct: 185 DVPSGVDSRAYPLVKELITSIDLALENANAGLAVRDGFKIAIIGPPNAGKSTLINALTGR 244

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIV+ I GTTRD++ + L+L GY+V +SDTAG+R+T D +E EG++R  +    +DL 
Sbjct: 245 DAAIVSSIAGTTRDIVEVRLELGGYVVWLSDTAGLRDTGDEIEAEGVRRALVRAAESDLR 304

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLEELIN 356
           + +   +               +  K+DL     ++ +       + S      + E + 
Sbjct: 305 IFMHGYDQPLPDLSLAQDGDFLLANKADLSDGTPQDLNLSDLDKKVFSEKVSLKMSEDVK 364

Query: 357 KI-----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLR 410
           +I     ++++          + S +RH   L  T   L+ A L  E D   D+IAE++R
Sbjct: 365 RIRVKLEQTVIDRMSTGASAPLVSRQRHKQLLLSTKENLQHAILAMENDFSADLIAEDIR 424

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LA+  +GKITG +D E +LD IF +FCIGK
Sbjct: 425 LAARDVGKITGEIDSEDVLDRIFGEFCIGK 454


>gi|241889088|ref|ZP_04776392.1| tRNA modification GTPase TrmE [Gemella haemolysans ATCC 10379]
 gi|241864337|gb|EER68715.1| tRNA modification GTPase TrmE [Gemella haemolysans ATCC 10379]
          Length = 460

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 147/460 (31%), Positives = 240/460 (52%), Gaps = 25/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LD 57
            ETI A+ST     AI I+RLSG   F + E I +  K K     AS    +G       
Sbjct: 2   SETICAISTALGEGAIGIVRLSGDEAFSIAEKIVRLPKGKTVESLASHTINYGNVVDPAT 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +++ +L+    P ++T ED  E + HGGI  +  +L  L      R+A PGEF++RA
Sbjct: 62  NEKIEEIMLVKMVGPRTYTTEDVIEINCHGGIITIQKVL-ALCLEHGARMAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++   M G LS+L  +   ++  I + +E ++D
Sbjct: 121 FLNGRIDLTQAEAVIDFIKSKTDEASQIANNQMQGRLSTLIKRLRAEILDILTVVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +D++  ++K +L     ++N + S +   K G+II+ G    I+G  N GKSSL N
Sbjct: 181 YPEYDDLEIETTKTILEKSTSIRNSLESLLETSKQGKIIKEGINTAIIGRPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRDVL   ++++G  +K+ DTAGIRETDDIVE+ G+KR+   +E
Sbjct: 241 NLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDDIVEQIGVKRSKEALE 300

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHL 342
            ADL+L L         + K+ +   +    I I  K DL +                  
Sbjct: 301 KADLVLFLLNSSEELTEDDKELLKLTEGKTTIVILNKLDLETKIDIAEVEKLAYNHPIIK 360

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
            S  T +G++EL   I+ +      +    +  S+ R +  + + +  L  A    E   
Sbjct: 361 TSMTTYKGIDELEKNIRDLFFGGAARPKDATYLSNTRQINLIQRALTSLNDAIGAAEMGL 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +       LG++ G    ++L++ +FS+FC+GK
Sbjct: 421 EVDMVLIDYTNTFNLLGEVIGENSGDELINELFSRFCLGK 460


>gi|323135828|ref|ZP_08070911.1| tRNA modification GTPase TrmE [Methylocystis sp. ATCC 49242]
 gi|322398919|gb|EFY01438.1| tRNA modification GTPase TrmE [Methylocystis sp. ATCC 49242]
          Length = 434

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 182/437 (41%), Positives = 255/437 (58%), Gaps = 6/437 (1%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDK 63
            +TIFA+ TGA  +AI++IRLSGP    V         P PR A L       DG  LD+
Sbjct: 3   SDTIFALGTGAGRTAIAVIRLSGPGVRAVLSE-FAGSTPEPRVARLVELRDPRDGETLDR 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GL I FP+P S TGED AEFHVHGG AVV G+L  L++ P LR A PGEF+RR F NGK+
Sbjct: 62  GLTIFFPAPHSATGEDYAEFHVHGGRAVVGGVLAALSRRPGLRSAEPGEFARRGFANGKL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE+LADL+ ++TE QRR ++    G L      W   L    + +EA+LDFS+E D
Sbjct: 122 DLSQAEALADLVDAQTEAQRRQALRIAGGALRRRVEAWRAALIEALALVEAELDFSDEGD 181

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V  FS+  +   +  + ++I + +      E +R+G+ ++ILG  NAGKS+L NALA++D
Sbjct: 182 VSVFSADRLEALLQPVLSEIRAALEDAPASERMRDGFLVMILGAPNAGKSTLLNALARRD 241

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIV+  PGTTRD++   LDL G  V   DTAG+RE +D +EK G+ R    V  ADL+L
Sbjct: 242 LAIVSPTPGTTRDMIEAHLDLGGLPVTFVDTAGLREAEDEIEKIGVDRVVERVGTADLVL 301

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
            L E   +  +    NID + + +K DL+ +         +S    GL+ L+N+I     
Sbjct: 302 WLSEKGEEPSLDALGNIDLLRVWSKCDLHQSAQGWLGICATS--SLGLDSLLNEIADRAG 359

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            +      ++   +RH        + +  A   EKD  L+ +A++LR A  SLG+I G V
Sbjct: 360 ARLGDGASALLIRERHRRAAEDAGKMIAAALAPEKD--LEFVADDLRSAGRSLGRIVGSV 417

Query: 424 DVEQLLDIIFSKFCIGK 440
           +VE +LD +FS FCIGK
Sbjct: 418 EVEDVLDAVFSHFCIGK 434


>gi|317401615|gb|EFV82241.1| tRNA modification GTPase mnmE [Achromobacter xylosoxidans C54]
          Length = 450

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/439 (36%), Positives = 235/439 (53%), Gaps = 17/439 (3%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESF 75
               I ++R+SG    ++   + +++   PR A    F  +DG +LD+G+ + F  P S+
Sbjct: 15  GRGGIGVVRVSGADLSELVRRLFQREL-TPRHAHYLPFKAVDGELLDEGIALYFKGPHSY 73

Query: 76  TGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
           TGED  E   HGG AV+  +L+      +   LRLA PGEF+RRAF N ++DL +AE++A
Sbjct: 74  TGEDVLELQGHGGPAVLRRVLDSCLAAGRDLGLRLAEPGEFTRRAFLNDRMDLAQAEAVA 133

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +    R +M  +SG+ S+      D++ H+R  +EA LDF E E++      + 
Sbjct: 134 DLIEASSVAAARGAMASLSGDFSARVNDLSDRIIHLRMLVEATLDFPE-EEIDFLEKYQA 192

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  L  D+   I+Q + G I+R G  +V+ G  N GKSSL NALA  DVAIVT I G
Sbjct: 193 RPTLEKLAGDLGHLIAQARQGVILREGLHVVLAGQPNVGKSSLLNALAGDDVAIVTPIAG 252

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRD +   + ++G  + I DTAG+RET+D VE  GI R++ E+E AD+IL L++     
Sbjct: 253 TTRDKVVQQIHIDGVPLHIVDTAGLRETEDTVESIGIARSWQEIERADVILHLQDATQPG 312

Query: 313 E-------ISFPKNIDFIFIGTKSDLYST--YTEEYDHLISSFTGEGLEELINKIKSILS 363
           +          P     + +  K DL ST       +  IS+  G GL+ L  ++  I  
Sbjct: 313 DELDAQITARLPPRTPVLKVFNKVDLLSTAFAAGPGELGISAKRGAGLDALRAELLRIA- 371

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITG 421
                      + +RHL+ L     +L +A+ + +     LD+ AE LRLA  SL  ITG
Sbjct: 372 GWNPGAESPWLARERHLHALQDAADHLALAAEHAEQDDRVLDLFAEELRLAHDSLSSITG 431

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               + LL  IFS FCIGK
Sbjct: 432 KFTSDDLLGEIFSSFCIGK 450


>gi|154251725|ref|YP_001412549.1| tRNA modification GTPase TrmE [Parvibaculum lavamentivorans DS-1]
 gi|205415789|sp|A7HSK9|MNME_PARL1 RecName: Full=tRNA modification GTPase mnmE
 gi|154155675|gb|ABS62892.1| tRNA modification GTPase TrmE [Parvibaculum lavamentivorans DS-1]
          Length = 438

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 178/442 (40%), Positives = 264/442 (59%), Gaps = 12/442 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI-LDKG 64
           ETI+A+ST A  + I+++RLSGP        +  +K   PR+A L  F   +    LD+G
Sbjct: 2   ETIYALSTAAGRAGIAVLRLSGPHARAALRALTGRKAGAPREAMLCRFRDPETHAALDRG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L I FP+P SFTGED  E H+HGG AV+  +L  L ++P LR A PGEF+RRAFENGK+D
Sbjct: 62  LAIFFPAPASFTGEDVVELHIHGGRAVIAAMLRALGQLPGLRAAQPGEFTRRAFENGKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QR  ++  M G L  LY  W  +L    ++ EA++DF + E+V
Sbjct: 122 LTEVEGLADLIDAETEAQRAQALRQMEGALGQLYEAWRARLMRALAYAEAEIDFPD-EEV 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                 ++  DI  L+ +I++H+  G+ GE +R+G ++ I+G  NAGKSSL N LA ++ 
Sbjct: 181 PGDLIAKLGPDIEALETEIAAHLDDGRRGEQLRDGVEVAIVGPPNAGKSSLLNRLAGREA 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+D  GTTRDVL + LD+ G  V ++DTAG+RE    +E+EG++R     E ADL ++
Sbjct: 241 AIVSDEAGTTRDVLEVRLDIGGVPVTLADTAGLREAAGAIEQEGVRRALARAEAADLRIV 300

Query: 305 LKE-----INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
           +       I +   ++ P ++    +  K DL +   +     IS+ TG+G++ L   + 
Sbjct: 301 MVAPGVSGIGNGFALARPDDLR---VLNKVDLGAEVPDGV-IGISALTGQGIDALEAALA 356

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASVSLGK 418
           + + + ++     + +  RH   L+     L  A    K     +++AE+LRLA+ +LG+
Sbjct: 357 ARVGSAYEAREHPVITRARHREGLADCAASLARAEAALKAGRDAELVAEDLRLAARALGR 416

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           ITG VDVE LLD+IF  FCIGK
Sbjct: 417 ITGRVDVEDLLDVIFRDFCIGK 438


>gi|258517429|ref|YP_003193651.1| tRNA modification GTPase TrmE [Desulfotomaculum acetoxidans DSM
           771]
 gi|257781134|gb|ACV65028.1| tRNA modification GTPase TrmE [Desulfotomaculum acetoxidans DSM
           771]
          Length = 461

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 156/461 (33%), Positives = 243/461 (52%), Gaps = 27/461 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-------D 57
           ++TI A++T      I I+R+SG     + E I +  K      +L Y           +
Sbjct: 3   EDTIAAIATPLGEGGIGIVRISGTESIIIAEKIFRSLKEKDWVKNLNYGLIYGYIVDPFN 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ LL V  +P S+T E+  E + HGG+  +    E L      R A PGEF++RA
Sbjct: 63  NSIVDEVLLSVMRAPNSYTRENIVEINCHGGLVPLRKTFE-LVLNSGARTAEPGEFTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AES+ D+I ++T     L+++ + G+LS       DKL ++ + +EA +D
Sbjct: 122 FLNGRLDLAQAESVIDVIRAKTSDSLSLAVKQLEGKLSEKISNMQDKLLYLLAHVEAVID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E ED++  + +++  +I  +  +I+  I   + G+I R G  +VI G  N GKSSL N
Sbjct: 182 FPE-EDIEASTIEKIKAEIKDIIKEINKWIELARAGKIYREGLAVVIAGKPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL K+  AIVT+IPGTTRD +   ++++G  VKI+DTAG+RET D VEK G++ +  ++ 
Sbjct: 241 ALLKEKRAIVTEIPGTTRDAIEEYINIKGIPVKITDTAGLRETGDTVEKIGVQISKEKIM 300

Query: 298 NADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS----------TYTEEYDH 341
            AD+IL + ++ +         +    N + I I  K D+ S           Y      
Sbjct: 301 GADIILYMLDVKNGFTDVDCYVLDEVINRNLIVIINKIDVGSGIEIINNISNKYENLEIV 360

Query: 342 LISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKD 399
            IS+    GL+ L + I S + S         I S+ RH   L + V  L+      E  
Sbjct: 361 QISALKDIGLDLLEDAIASFVFSGNAAASNEIIISNTRHKSVLKRVVYNLQDVIEGIENA 420

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LDI++ +LR A  +LG+ITG    E ++D IF +FCIGK
Sbjct: 421 MPLDIVSIDLRNAWETLGEITGSSVTEDIIDKIFKEFCIGK 461


>gi|332664864|ref|YP_004447652.1| tRNA modification GTPase mnmE [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333678|gb|AEE50779.1| tRNA modification GTPase mnmE [Haliscomenobacter hydrossis DSM
           1100]
          Length = 458

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 235/458 (51%), Gaps = 26/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF----GLDGRIL 61
           +TI A++T     AI +IRLSGP   Q+ + +   KK   ++AS    F         IL
Sbjct: 4   DTIVALATPPGIGAIGVIRLSGPQAIQIVDAVFYGKK-LDKQASHTIHFGTIRDEQDHIL 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L  +F  P S+TGE+  E   HG   ++  ++  L      RLA PGEF+ RAF NG
Sbjct: 63  DEVLASLFVEPRSYTGENVVEISCHGSNYIIQELI-RLFIRKGARLAQPGEFTLRAFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++ADLI+S +E  ++++++ + G +SS   +   +L    S IE +LDF E 
Sbjct: 122 QMDLSQAEAVADLIASSSEAAQQVAIKQLRGGISSEIKKLRQELIDFASLIELELDFGE- 180

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           EDV+  +  ++ + +  L   +   +   +LG  I+ G   VI G  NAGKS+L NAL  
Sbjct: 181 EDVEFANRDQLRDLVEKLIRLMHKLLDSFQLGNAIKEGVNTVIAGRPNAGKSTLLNALLN 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIV++I GTTRD +   L+++G   +I DTAGIRE  D +E  GI++T  +V  + +
Sbjct: 241 EERAIVSEIAGTTRDTIEESLNIQGIQFRIIDTAGIREASDTIEAIGIQKTLEKVRQSAV 300

Query: 302 ILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYST----------YTEEYDHLI 343
           +L + ++   +              N   + +  K DL             ++ E    I
Sbjct: 301 LLYIFDVIKTQPAQLEADLAQLLHPNTQLLVVANKMDLNPYTEYQHYANPHFSAEQWIPI 360

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+     +E L  ++   + +    +  +I S+ RH   L +    LE            
Sbjct: 361 SAANEMNIEYLKERLYQTVVSNEVSMDAAIVSNVRHYEALQKAKESLEAVIQGLSSAVTT 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D IA ++R +   LG+ITG +  E LLD IFS+FCIGK
Sbjct: 421 DFIAMDIRHSLAYLGEITGEISTEDLLDNIFSRFCIGK 458


>gi|256420475|ref|YP_003121128.1| tRNA modification GTPase TrmE [Chitinophaga pinensis DSM 2588]
 gi|256035383|gb|ACU58927.1| tRNA modification GTPase TrmE [Chitinophaga pinensis DSM 2588]
          Length = 461

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 141/455 (30%), Positives = 243/455 (53%), Gaps = 22/455 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRIL 61
            +TI A++T     AI++IRL+G     +C  +   K    ++A     FG     GR +
Sbjct: 10  DDTIVALATAPGIGAIAVIRLNGTKAIDICNSLFPAKD-LHQQAGHTLHFGSIVDRGRTI 68

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ ++ ++ +P S+TGE+  E   HG   +   I++        R+A PGE++ RAF NG
Sbjct: 69  DEVVVSLYKAPRSYTGEEIVEISCHGSPYIQQQIIDACI-HAGARMAKPGEYTLRAFLNG 127

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AES+ADLI+S +    + +M+ M G  S       ++L    + IE +LDFS+ 
Sbjct: 128 KLDLTQAESVADLIASNSAASHQTAMQQMRGGFSKELYSLREQLISFSALIELELDFSQ- 186

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           EDV+     ++   I      +   +   ++G +I+NG    I+G  NAGKS+L N L  
Sbjct: 187 EDVEFADRTQLYRLINEANEVVQHLVDSFRMGNVIKNGVNTAIVGKPNAGKSTLLNTLLN 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIV+DI GTTRD +   L+++G L ++ DTAGIRE+ D++E  G+++T  ++  A +
Sbjct: 247 ENRAIVSDIAGTTRDTIEEVLNIQGVLFRLIDTAGIRESADVIESIGVQKTMEKIREAGV 306

Query: 302 ILLLKEIN--------SKKEISFPKNIDFIFIGTKSDL-------YSTYTEEYDHLISSF 346
           +L L ++N        ++ +    + I+++ IG K+D+           T E    IS+ 
Sbjct: 307 VLYLFDVNETSLSELQAQVDTFVNEGINYLLIGNKTDINGLAAMQEKFATVEGILYISAK 366

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
             E ++EL +++   + +       +I ++ RH   L + ++ L+      +     D++
Sbjct: 367 QHEHIQELKDRLVQKVMSGDINTEDTIVTNARHYAALQEVLKALQDVRFGLDSQLPGDLL 426

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + ++R     LG+ITG +  E  LD IFSKFCIGK
Sbjct: 427 SLDIRRCLHYLGEITGQITNEDQLDFIFSKFCIGK 461


>gi|198431401|ref|XP_002128736.1| PREDICTED: similar to GTP binding protein 3 [Ciona intestinalis]
          Length = 544

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 168/470 (35%), Positives = 258/470 (54%), Gaps = 34/470 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-DGRIL 61
            + TI+AVS+G     +SIIR+SG         + K+K  P PRKA ++  +      +L
Sbjct: 76  HQSTIYAVSSGFGKCGVSIIRVSGKCSPNALLKLTKRKSLPGPRKAIVQPIYHPVSNLML 135

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L++ FP P SFTGED  EF VHGG AV+  +L  L+ +  LR A  G+++++AF NG
Sbjct: 136 DRSLVLWFPRPSSFTGEDVCEFQVHGGPAVIASVLNALSCITGLRPAEAGDYTKQAFLNG 195

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL E E L DLI +ETE QRR ++  M G L+SLY  W +++    + +EA +DF E+
Sbjct: 196 KLDLTEVEGLGDLIHAETEAQRRQALHQMEGSLASLYKGWSNEVLRCVAHLEAFIDFEED 255

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+       +  +   + + I  H+S  + GE +R+G ++ I+G  N GKSSL NA+ +
Sbjct: 256 EDLDPDIICNIRLNTTKMISKIQHHLSDERRGERLRDGVRVAIIGKPNVGKSSLLNAVTQ 315

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +  AIV+ IPGTTRDV+   LD+ G+ V ISDTAG+R +  ++EK+G+ R +++ + ADL
Sbjct: 316 RPAAIVSPIPGTTRDVIETALDISGFPVLISDTAGLRRSHGVIEKQGVDRAYVKAKEADL 375

Query: 302 ILLLK---EINSKK-------------EISFPKN--IDFIFIGTKSDLYSTYTEEYDHL- 342
           ++L+    E+N+K              E+   K    + I I  KSDL  +   +     
Sbjct: 376 VVLVVNSQEVNNKDLNNFSEFIKQHAHELHLEKTSLENLIVILNKSDLLESEKLKKIRDL 435

Query: 343 ---------ISSFTGEGLEELINKIK---SILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                    IS  T +G ++L+         L            + +RH  HL+  V +L
Sbjct: 436 QSEYASVLLISCKTLDGFQDLLQTFSKRLEKLCGGSCVGETPSVTQQRHRLHLNNCVSFL 495

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E  +    +  + I AE  R+A   LG+I+G +  E +LD+IF  FCIGK
Sbjct: 496 EKGN-QFLNKDVVIAAEYFRMALTELGRISGKIGSEDILDVIFKDFCIGK 544


>gi|190571401|ref|YP_001975759.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018799|ref|ZP_03334607.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|226704787|sp|B3CMJ7|MNME_WOLPP RecName: Full=tRNA modification GTPase mnmE
 gi|190357673|emb|CAQ55117.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995750|gb|EEB56390.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 442

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 175/447 (39%), Positives = 261/447 (58%), Gaps = 12/447 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M +  ETIFA+ST    S +++IR+SG    +       KKK  PR A+L   +    ++
Sbjct: 1   MTNTNETIFALSTVFGKSGVAVIRISGNYTLKALNHFHIKKKIKPRFATLVDLYDDSNQL 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G++I FP+P SFTGED  E  VHG  AV+  ILE+L+K+    +A PGEFS RAF N
Sbjct: 61  IDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEKLSKI--FVMARPGEFSLRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK DL + E +ADLI +ET+MQ + +++ +SGEL  LY  W  +L  I+S IEA +DF E
Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   +    +++ N++  L   I  H++  + GE +R G  IVI G  N GKS+LFN LA
Sbjct: 179 DIWAEKSELEKINNEVQSLVQLIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K+D+AIV++  GTTRD+L   +D+ GY + +SDTAGIRE+ D +E EGI R       AD
Sbjct: 239 KRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIESEGISRAKKRSFEAD 298

Query: 301 LILLLKEINSKKEISFP-KNIDFIFIGTKSDLYSTYTEEYD-----HLISSFTGEGLEEL 354
           L + L     +  I+    N D I++ +K+D                 IS   G G  +L
Sbjct: 299 LRIELFPFEQRHNINCNVVNSDTIYVLSKADDAINDRNILIGGVDFLPISILKGIGTNKL 358

Query: 355 INKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           I+ IK     KF       + + +RH  H+ + + +L+   +   D  +++I+E+LRLA+
Sbjct: 359 ISLIKKKAEEKFGHDRDTPVITRQRHRSHMQKALEHLQRFKI---DNPIELISEDLRLAA 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LG + G ++VE++LD +FS FC+GK
Sbjct: 416 FELGAVIGIINVEEILDSVFSSFCVGK 442


>gi|159029809|emb|CAO90863.1| trmE [Microcystis aeruginosa PCC 7806]
          Length = 457

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 154/461 (33%), Positives = 242/461 (52%), Gaps = 25/461 (5%)

Query: 1   MNHEKETIFAVSTGALP--SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-- 56
           M +  +TI A++T  +P   +I I+RLSG     +   +   +     + S R  +G   
Sbjct: 1   MLNTGDTIAAIATAIVPEQGSIGIVRLSGSEAVAIARRLFHTRNRQKWQ-SHRLLYGYIR 59

Query: 57  ---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
                 I+D+ LL++  +P SFT ED  EFH HGGI  V  +L+ L      RLA  GEF
Sbjct: 60  HPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQ-LCLENGARLAQAGEF 118

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           S RAF NG+IDL +AES+ DL+ + +    + ++ G+ G+L+            I + IE
Sbjct: 119 SLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCLDILAEIE 178

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF E  D+     + VL+ I  +   ++  ++  + GE++R+G K+ I+G  N GKS
Sbjct: 179 ARIDFEE--DLPLLDHEAVLSSIEQVFCQVNLILATAERGELLRSGLKVAIVGRPNVGKS 236

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NA ++ D AIVTD+PGTTRD++   L + G  V++ DTAGIR   D VE+ G++R+ 
Sbjct: 237 SLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIGVERSR 296

Query: 294 LEVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYT------EEYDH 341
              ++ADL+LL     S      ++      +   I +  K DL +  T       E   
Sbjct: 297 QTAQSADLVLLTVSAESGWTEEDEEIYRSVSDRRLILVINKIDLVNPETVIYPAEIERVV 356

Query: 342 LISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
            IS+   +G+E+L   I + + N+  +     +  ++R    L++    LE      ++D
Sbjct: 357 KISAVQNQGIEDLEKTIINAVQNQELQAANLDLAINQRQAAALTRAKIALEQVKKTIDQD 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D  + +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 417 LPFDFWSIDLRTAIQALGEITGEEVTESVLDRIFSRFCIGK 457


>gi|282895353|ref|ZP_06303554.1| tRNA modification GTPase TrmE [Raphidiopsis brookii D9]
 gi|281199604|gb|EFA74465.1| tRNA modification GTPase TrmE [Raphidiopsis brookii D9]
          Length = 460

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 150/457 (32%), Positives = 240/457 (52%), Gaps = 29/457 (6%)

Query: 7   TIFAVSTG--ALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFG-----LD 57
           TI A++T       ++ I+R+SG     +   +     K+ +    S R  +G       
Sbjct: 10  TIAAIATAVVPQQGSVGIVRVSGDQAMAIAHTLFYTPGKQIWE---SHRILYGFVRQPET 66

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ LL++  +P SFT ED  EFH HGGI  V  +L+ L      RLA PGEFS RA
Sbjct: 67  KQVVDEALLLIMKAPRSFTREDVVEFHCHGGIIPVQQVLQ-LCLENGARLAQPGEFSLRA 125

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AES+ADL+ +++    + ++ G+ G+L+       ++   I + IEA +D
Sbjct: 126 FLNGRLDLTQAESIADLVGAKSPQAAQTALAGLRGKLAQPIRYLRNQCLDILAEIEARID 185

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E  D+      +++  I  +  ++S  +S  + GE++R+G K+ I+G  N GKSSL N
Sbjct: 186 FEE--DLPPLDQGKIITQINQISVEVSRLLSTKEKGELLRSGLKVAIVGRPNVGKSSLLN 243

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           A ++ D AIVTD+PGTTRD++   L + G  +++ DTAGIRET D VEK G++R+     
Sbjct: 244 AWSQCDRAIVTDLPGTTRDIVESQLVVGGIPIQVLDTAGIRETVDQVEKIGVERSRQAAN 303

Query: 298 NADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTY------TEEYDHLISS 345
           +ADL+LL  +  +      ++     K+   I +  K DL          T E     ++
Sbjct: 304 SADLVLLTIDAKAGWQSGDEEIYQQVKHRPLILVINKIDLVEDLGGICSPTMEKAVKTAA 363

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDCGLD 403
               G+E+L   I  ++   K       +  ++R    L +  +  +++         LD
Sbjct: 364 GQNRGIEDLEQAILEVVQTQKIVAGDLDLAINQRQAAALIKAQIDLVQVQKTIVDQLPLD 423

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +LR A  +LG+ITG    E LLD IFS+FCIGK
Sbjct: 424 FWTIDLRGAIYALGEITGEEVTESLLDRIFSRFCIGK 460


>gi|326804314|ref|YP_004322132.1| tRNA modification GTPase TrmE [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650573|gb|AEA00756.1| tRNA modification GTPase TrmE [Aerococcus urinae ACS-120-V-Col10a]
          Length = 466

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 137/458 (29%), Positives = 248/458 (54%), Gaps = 25/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGR 59
           +TI A+ST     AI I+RLSG     + + + +   K    + S    +G        +
Sbjct: 11  DTIAAISTAPGEGAIGIVRLSGDQALAIADTVYQMGTKQLANQDSHTIHYGHIVDPQSEQ 70

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+ ++ V  +P+++T ED  E + HGG+   + IL+ L      R+A PGEF++RAF 
Sbjct: 71  ELDEVMVTVLRAPKTYTREDIVEINCHGGMVATDRILQ-LVLREGARMAEPGEFTKRAFL 129

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I S+T+     +M+ + G+LS+      ++++     +E ++D+ 
Sbjct: 130 NGRIDLTQAEAVQDMIRSKTDRSMDQAMKQLDGKLSTKISTLRNRISDAMVQVEVNIDYP 189

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E E+ +             ++ ++   ++  K G+I+R+G +  I+G  N GKSSL N L
Sbjct: 190 EYEEEEMTLELLD-QTADTIQAELQRLLTTAKQGKILRDGIETAIIGRPNVGKSSLLNHL 248

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++D AIVTDI GTTRD +   ++L G  +K+ DTAGIR+T+D+VEK G++R+   +E A
Sbjct: 249 LREDKAIVTDIEGTTRDTIEEYVNLRGVPLKLVDTAGIRDTEDVVEKIGVERSRKAMEEA 308

Query: 300 DLILLL------KEINSKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLISS 345
           DL+LL+       +   ++ ++  K+ + I +  K+DL         + Y ++ + + +S
Sbjct: 309 DLVLLILNQSEPLQAMDRELLTMTKDSNRIILLNKTDLDPALSLDDLADYADKEEIIKTS 368

Query: 346 FTG-EGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGL 402
            T  +G+++L  +I  +    +      +  S+ RH+  L +  + +  A         +
Sbjct: 369 ITQDQGVDDLEERISQLFFSGQTGDRDATYVSNTRHIDLLQKASQAIAEAKEAISLGTPV 428

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+I  +   A   LG+ITG    ++L+  +FS+FC+GK
Sbjct: 429 DLIQIDFNRAFEFLGEITGENAPDELITKLFSQFCLGK 466


>gi|317476897|ref|ZP_07936140.1| tRNA modification GTPase TrmE [Bacteroides eggerthii 1_2_48FAA]
 gi|316907072|gb|EFV28783.1| tRNA modification GTPase TrmE [Bacteroides eggerthii 1_2_48FAA]
          Length = 461

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 143/465 (30%), Positives = 236/465 (50%), Gaps = 29/465 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-----SLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP   ++   I        R       +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGCIRVSGPEAIEITSRIFTPAISNKRLEESKPYTLTFGRI 57

Query: 56  LDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            +G  I+D+ L+ +F +P S+TGE+S E   HG   ++  +L+ L K    R+A PGE++
Sbjct: 58  HEGSEIIDEVLVSLFRAPHSYTGENSTEITCHGSAYILQKVLQLLIK-NGCRMAQPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL+M  M G  S       ++L H  S IE 
Sbjct: 117 QRAFLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTTLRNQLLHFTSLIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ E+++     E+      ++  I   ++   +G  I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSDHEELEFADRSELCLLADNIEKVIVRLVNSFSVGNAIKNGVPVAIIGETNAGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF 
Sbjct: 237 LLNVLLNEEKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQ 296

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD----- 340
           +++ A+++L + +           S + +   +    I +  K DL +    +       
Sbjct: 297 KLDQAEIVLWMIDATNAQTQITQLSSQLLPRCRAKQLILVYNKVDLVANIQNDIPTNFPD 356

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                +IS+   E +EEL   + +            I ++ RH   L+  +  +      
Sbjct: 357 DVKSIVISAKKREHIEELQQMLITSAHLPTITQNDVIVTNVRHYEALNNALEAIHRVQEG 416

Query: 397 E-KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +   D +++++R     L  I G V  + +L  IF  FCIGK
Sbjct: 417 LVNNLSGDFVSQDIRECIFHLSDIAGEVTNDMVLHNIFQHFCIGK 461


>gi|120613418|ref|YP_973096.1| tRNA modification GTPase TrmE [Acidovorax citrulli AAC00-1]
 gi|205829049|sp|A1TWI4|MNME_ACIAC RecName: Full=tRNA modification GTPase mnmE
 gi|120591882|gb|ABM35322.1| tRNA modification GTPase trmE [Acidovorax citrulli AAC00-1]
          Length = 482

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/484 (33%), Positives = 244/484 (50%), Gaps = 47/484 (9%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     + E +C +    PR+A+   F    G+ 
Sbjct: 2   LPRHTDPIAAIATAPGRGAVGIVRVSGRGIGPLVEALCGRAL-RPREATYLPFRDAGGQA 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA-------------KMPNLRL 107
           +D+GL + FP+P S+TGED  E   HGG  V+  +L                 ++P LRL
Sbjct: 61  IDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLQAAGEADRATGRPRLPGLRL 120

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEF+ RAF N KIDL +AE++ADLI + TE   R +   ++G  S    +  D L H
Sbjct: 121 ARPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLAGAFSDEIHRLRDALVH 180

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA LDF E E++      +    +  L+  ++  + + + G ++R G K+VI G 
Sbjct: 181 LRMLVEATLDFPE-EEIDFLRKADAHGQLAALQRTLAEVMGRTRQGALLREGIKVVIAGQ 239

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+RE+DD VE+ 
Sbjct: 240 PNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESDDEVERI 299

Query: 288 GIKRTFLEVENADLILLLKEIN---------SKKEIS------FPKNIDFIFIGTKSDL- 331
           GI+R + E+  AD +L L ++          +  EI+       P ++  + +  KSD  
Sbjct: 300 GIERAWQEIAAADAVLFLHDLTRAGQPDYEAADAEIAARLARMAPAHVPVVDVWNKSDRA 359

Query: 332 -------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                         S         +S+ TGEGL+ L   +  I   +         +  R
Sbjct: 360 EGSAAAGQGGVATASASGRAAAVRLSARTGEGLDGLRRVLLDIAGWQ-SAPEGIYTARAR 418

Query: 379 HLYHLSQTVRYL--EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436
           HL  L     +L    A L      LD++AE LRLA  +L  ITG    + LL +IFS F
Sbjct: 419 HLEALRAVDMHLMEAAAQLQCDGPALDLLAEELRLAQQALNAITGEFTSDDLLGVIFSSF 478

Query: 437 CIGK 440
           CIGK
Sbjct: 479 CIGK 482


>gi|255014529|ref|ZP_05286655.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_7]
          Length = 461

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 150/460 (32%), Positives = 237/460 (51%), Gaps = 27/460 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-------LRYFFGLDGR 59
           TI A+ST      I+++R+SGP  F++C+ I + KK     ++            G +  
Sbjct: 3   TICAISTAPGVGGIAVVRVSGPDAFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  VF +P SFTGED+ E   HG   +   IL+ L      R+A PGE+++RAF 
Sbjct: 63  TIDEVIAAVFRAPHSFTGEDTVEITCHGSTYIQQQILQSLI-SSGCRIAQPGEYTQRAFM 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S +  Q RL++  M G  S    +  ++L H  S +E +LDFS
Sbjct: 122 NGKMDLSQAEAVADLIASTSTGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + E+++     E+      ++  IS       +G  I+NG  + I+G +NAGKS+L NAL
Sbjct: 182 DHEELEFADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIV+DI GTTRDV+   +++ G L +  DTAGIRET D +E  GI+R+F  ++ A
Sbjct: 242 LNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETSDAIEALGIERSFKALDQA 301

Query: 300 DLILLLKEINSK--------KEIS-FPKNIDFIFIGTKSDL--------YSTYTEEYDHL 342
            +++L+ ++           +EI+    N   I    K D+        +S  TE +  +
Sbjct: 302 QIVILMYDLTRDLKDFEAFYQEIAPRLTNKSVILAMNKCDVLPTSSLPTFSFPTEGWHQI 361

Query: 343 ISSFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DC 400
             S  G+  + EL   +  + S         I ++ RH   L+  +  +           
Sbjct: 362 AISAKGKLHIAELQQLLTEVSSIPTLHQSDIIVTNARHFEALTHALEAIHRVQEGLNSSL 421

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D I+++LR     L  I G V  +Q+L  IF  FCIGK
Sbjct: 422 SGDFISQDLRECIFHLSDIVGEVTTDQVLQNIFRYFCIGK 461


>gi|166367612|ref|YP_001659885.1| tRNA modification GTPase TrmE [Microcystis aeruginosa NIES-843]
 gi|205415798|sp|B0JVV0|MNME_MICAN RecName: Full=tRNA modification GTPase mnmE
 gi|166089985|dbj|BAG04693.1| thiophen and furan oxidation protein [Microcystis aeruginosa
           NIES-843]
          Length = 457

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 151/461 (32%), Positives = 239/461 (51%), Gaps = 25/461 (5%)

Query: 1   MNHEKETIFAVSTGALP--SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-- 56
           M +  +TI A++T  +P   +I I+RLSG     +   +         + S R  +G   
Sbjct: 1   MLNTGDTIAAIATAIVPEQGSIGIVRLSGSEAVAIARRLFHSPNRQKWQ-SHRLLYGYIR 59

Query: 57  ---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
                 I+D+ LL++  +P SFT ED  EFH HGGI  V  +L+ L      RLA  GEF
Sbjct: 60  HPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQ-LCLENGARLAQAGEF 118

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           S RAF NG+IDL +AES+ DL+ + +    + ++ G+ G+L+            I + IE
Sbjct: 119 SLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCLDILAEIE 178

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF E  D+       VL+ I  +   ++  ++  + GE++R+G K+ I+G  N GKS
Sbjct: 179 ARIDFEE--DLPPLDHAAVLHSIEQVFCQVNLILATAERGELLRSGLKVAIVGRPNVGKS 236

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NA ++ D AIVTD+PGTTRD++   L + G  V++ DTAGIR   D VE+ G++R+ 
Sbjct: 237 SLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIGVERSR 296

Query: 294 LEVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYD------H 341
               +ADL+LL     S      ++      +   I +  K DL +  T  Y        
Sbjct: 297 QTARSADLVLLTVSAESGWTQEDEEIYRSVSDRRLILVINKIDLANPETVIYPAEIKRVV 356

Query: 342 LISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
            +S+   +G+E+L   + + + N+  +     +  ++R    L++    L+      +++
Sbjct: 357 KLSAAQNQGIEDLEKSLINAVQNQELQAANLDLAINQRQAAALTRAKIALQQVKKTIDQN 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D  + +LR A  SLG+ITG    E +LD IFS+FCIGK
Sbjct: 417 LPFDFWSIDLRTAIQSLGEITGEEVTESVLDRIFSRFCIGK 457


>gi|169635758|emb|CAQ16332.1| t-RNA modification GTPase protein [Bacillus megaterium]
          Length = 457

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 150/463 (32%), Positives = 238/463 (51%), Gaps = 29/463 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   ETI AV+T   P  + I+R+SGP    +      +++  PR A    F+G +  +
Sbjct: 1   MSVAAETIAAVATAQGPGGVGIVRISGPLA-SIAAKAFSERELKPRYAHYGPFYGENREV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++    LA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCIQL-GCHLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       ++L  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  +  ++ ++S  + +     ++ +G  ++  G  +AGKSS  +   
Sbjct: 179 -EEIDFLADGHVLGMLDTVRQELSPVMREAGPDALLPDGMTVLTAGRPHAGKSS-CSTHC 236

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +   AIVT+I GTTRDVL   + ++G  + + DTAG+R+TDD VEK G++R    +  AD
Sbjct: 237 RTRSAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVQRALKAIGEAD 296

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTE----EYDHLISS 345
            +LL+ +  + +               P       I  K+DL          +  H+  S
Sbjct: 297 RVLLVVDATAPEADDPFALWPEFLQQRPDPAKVTLIRNKADLTGEDIRLQVCDDGHVTIS 356

Query: 346 FT------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNE 397
            +      G+GLE L + +K+ +    +    S  + +RHL  L      LE   A L  
Sbjct: 357 LSARSTDAGDGLELLRDHLKACM-GYEQTSESSFSARRRHLEALRHASDALEHGRAQLTL 415

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              G +++AE+LR A  SLG+ITG    + LL  IFS F IGK
Sbjct: 416 AGAG-ELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFRIGK 457


>gi|225630647|ref|YP_002727438.1| tRNA modification GTPase [Wolbachia sp. wRi]
 gi|254811498|sp|C0R405|MNME_WOLWR RecName: Full=tRNA modification GTPase mnmE
 gi|225592628|gb|ACN95647.1| tRNA modification GTPase [Wolbachia sp. wRi]
          Length = 442

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 174/447 (38%), Positives = 263/447 (58%), Gaps = 12/447 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M +  ETIFA+ST    S +++IR+SG    +       KK+  PR A+L   +    ++
Sbjct: 1   MTNTNETIFALSTVFGKSGVAVIRISGNYALKALNHFHIKKEIKPRFATLVDLYDDSSQL 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G++I FP+P SFTGED  E  VHG  AV+  ILEEL+K+    +A PGEFS RAF N
Sbjct: 61  IDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEELSKV--FVMAKPGEFSLRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK DL + E +ADLI +ET+MQ + +++ +SGEL  LY  W  +L  I+S IEA +DF E
Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   +    +++ N++  L   I  H++  + GE +R G  IVI G  N GKS+LFN LA
Sbjct: 179 DIWAEKSELEKINNEVQSLVRLIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K+D+AIV++  GTTRD+L   +D+ GY + +SDTAGIRE+ D +E EGI R       AD
Sbjct: 239 KRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIELEGISRAKKRSFEAD 298

Query: 301 LILLLKEINSKKEISFP-KNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEEL 354
           L + L     +  I+    N D I++ +K+D      +   +      +S   G G  +L
Sbjct: 299 LRIELFPFEQRPNINCNVVNSDTIYVLSKADDVINNHDIKINGIDLLPVSILKGIGTNKL 358

Query: 355 INKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           I+ IK     KF       + + +RH  H+ + + +L+  ++   D  +++I+E+LRLA+
Sbjct: 359 ISLIKEKAEEKFGHDRDTPVITRQRHRNHMQKALEHLQRFNI---DNPIELISEDLRLAA 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LG + G +DVE++L  +FS FC+GK
Sbjct: 416 FELGAVIGIIDVEEILSSVFSNFCVGK 442


>gi|298490946|ref|YP_003721123.1| tRNA modification GTPase TrmE ['Nostoc azollae' 0708]
 gi|298232864|gb|ADI64000.1| tRNA modification GTPase TrmE ['Nostoc azollae' 0708]
          Length = 464

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 151/459 (32%), Positives = 242/459 (52%), Gaps = 29/459 (6%)

Query: 7   TIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
           TI A++T       ++ I+R+SG     + + +    +      S R  +G        +
Sbjct: 10  TIAAIATAVVPQQGSVGIVRVSGDKAIAIAQTLFSAPR-RQVWESHRILYGYIRQPQTRQ 68

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ LL++  +P SFT ED  EFH HGGI  V  +L+ L      RLA PGEF+ RAF 
Sbjct: 69  LVDEALLLIMKAPRSFTREDVVEFHCHGGIIAVQQVLQ-LCLENGARLAQPGEFTLRAFL 127

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AES+ADL+ +++    + ++ G+ G+L+    Q   +   I + IEA +DF 
Sbjct: 128 NGRLDLTQAESVADLVGAKSPQAAQTALAGLQGKLAHPIRQLRAQCLDILAEIEARIDFE 187

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  D+     + ++++I  +  +I+  ++    GE++R G K+ I+G  N GKSSL NA 
Sbjct: 188 E--DLPPLDEQRIISEIDQVTLEITKFLATKDQGELLRTGLKVAIVGRPNVGKSSLLNAW 245

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIRET D VEK G++R+      A
Sbjct: 246 SQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETADQVEKIGVERSRRASSAA 305

Query: 300 DLILLLKEIN-----SKKEI-SFPKNIDFIFIGTKSDLYSTYTEEY----------DHLI 343
           DL+L   + +     + +EI    K+   I +  K DL S   ++             + 
Sbjct: 306 DLVLFTIDASAGWTQADQEIYEQVKHRPVILVINKIDLISIAEKQTLQSKIQSPKSKIVT 365

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           ++   +G++ L   +  I+   K +     +  ++R    L++    LE       +   
Sbjct: 366 AAAQNQGIDSLETAVLEIVKAGKVQAADIDLAINQRQAAALTKAKISLEQVQVTIIEQLP 425

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD    +LR A  +LG+ITG    E +LD IFSKFCIGK
Sbjct: 426 LDFWTIDLRGAIYALGEITGEEVTESVLDRIFSKFCIGK 464


>gi|330998375|ref|ZP_08322199.1| tRNA modification GTPase TrmE [Paraprevotella xylaniphila YIT
           11841]
 gi|329568481|gb|EGG50286.1| tRNA modification GTPase TrmE [Paraprevotella xylaniphila YIT
           11841]
          Length = 464

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 148/465 (31%), Positives = 239/465 (51%), Gaps = 29/465 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFP---RKAS---LRYFF 54
           + ++TI A++T     AI +IR+SG     + + I     K P P   RKA      +  
Sbjct: 2   NTQDTICAIATAQG-GAIGVIRISGKDAIAITDRIFTPAGKHPLPLSERKAYTMAFGHIR 60

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             DG I+D+ L+ +F SP S+TGED  E   HG   ++  +++ L +    R A PGEF+
Sbjct: 61  QDDGEIIDEVLIGLFKSPHSYTGEDCVEISCHGSSFILQQVMQLLIR-KGCRAAGPGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    R++M  M G  S       ++L H+ S +E 
Sbjct: 120 QRAFLNGKMDLSQAEAVADLIASSSAATHRMAMNQMRGGFSRELSALRERLLHLTSLMEL 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ E+++     E+      ++  IS  +    +G +++NG  + I+G +NAGKS+
Sbjct: 180 ELDFSDHEELEFADRSELETIAGDIEKVISGLVHSFSVGNVLKNGIPVAIVGETNAGKST 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIV+DI GTTRDV+   ++L G   +  DTAGIR+T D +E  GI R+F 
Sbjct: 240 LLNTLLNEEKAIVSDIHGTTRDVIEDTVNLSGITFRFIDTAGIRDTHDTIENMGIARSFH 299

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD----- 340
           ++E A+++L + +           S + +    N   I +  KSD  S    +       
Sbjct: 300 KMEQAEIVLWVVDNTCAEAQIRQLSPRILPLCSNKQLIILLNKSDQASPIPTKLSGLPEN 359

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
                IS+    G++EL N +  + S         I ++ RH   LS  +  +       
Sbjct: 360 TVTLSISAKEKTGIQELQNLLVKVASVPELTSSDLIVTNVRHYEALSLALEDIHRVQNGL 419

Query: 398 K-DCGLDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           +     D I+++LR     L +I  G +  +++L  IF  FCIGK
Sbjct: 420 QTHLSGDFISQDLRGCLFHLAEIVGGEITTDEVLGNIFKNFCIGK 464


>gi|298243558|ref|ZP_06967365.1| tRNA modification GTPase TrmE [Ktedonobacter racemifer DSM 44963]
 gi|297556612|gb|EFH90476.1| tRNA modification GTPase TrmE [Ktedonobacter racemifer DSM 44963]
          Length = 474

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 151/475 (31%), Positives = 237/475 (49%), Gaps = 40/475 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-----KPFPRKASLRYFFGLD- 57
           + +TI A++T      + IIR+SG   F +   + ++       P P    L Y   +D 
Sbjct: 2   QNDTIAAIATPQGVGGVGIIRVSGSDAFSLVAPLLRRPSREDIPPVPPTHQLTYRVIIDP 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ILD+ L+    +P ++T ED  E   HGG  ++  IL  +      R+ANPGEF+ 
Sbjct: 62  ATQEILDEVLVAFMRAPHTYTCEDVVEIQGHGGPLILRRILRSVL-AQGARMANPGEFTL 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ DLI S+TE+ +RL+M+ + G+LS         +    + IEA 
Sbjct: 121 RAFLNGRLDLAQAEAVMDLIGSQTEVGQRLAMQQLRGKLSDQVEHARTSMLGAIARIEAS 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF E +D+    ++E+L  I   +  I+  ++  + G + R G +  I+G  N GKSSL
Sbjct: 181 IDFPE-DDIPTPQAEELLPFIEEAQRQIARLLAGSEQGRLYRQGLRTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL + + AIVT I GTTRD +    +L G  + + DTAGI  T D VE+ G++R+ L 
Sbjct: 240 LNALLRIERAIVTPIAGTTRDTVEEIANLRGIPLHLIDTAGITPTQDPVEQLGVQRSRLA 299

Query: 296 VENADLILLLKE-INSKKEISF------------------PKNIDFIFIGTKSD------ 330
            E AD+IL + +   +  E  +                        + +  K+D      
Sbjct: 300 AETADVILHVFDGATALTEQDWQVAQELRAMGYGEKREGQAARRPVVVVINKADCEQVID 359

Query: 331 ---LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF-KKLPFSIPSHKRHLYHLSQT 386
              + S + +      S+ TGEGLE L N +  ++           + +  RH   L + 
Sbjct: 360 VAAIQSFWQDASLVQTSTLTGEGLEALENTLAELVQAGNVSGNESVLITSARHQEALRRG 419

Query: 387 VRYLEMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +L  A L+      LD ++ +LR A  +LG++TG    E LLD IFS+FCIGK
Sbjct: 420 AEHLNAAILSLGQKVPLDFVSIDLRAAYDALGEVTGETASEDLLDRIFSEFCIGK 474


>gi|303256375|ref|ZP_07342389.1| tRNA modification GTPase TrmE [Burkholderiales bacterium 1_1_47]
 gi|331001498|ref|ZP_08325116.1| tRNA modification GTPase TrmE [Parasutterella excrementihominis YIT
           11859]
 gi|302859866|gb|EFL82943.1| tRNA modification GTPase TrmE [Burkholderiales bacterium 1_1_47]
 gi|329568227|gb|EGG50044.1| tRNA modification GTPase TrmE [Parasutterella excrementihominis YIT
           11859]
          Length = 463

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 163/459 (35%), Positives = 257/459 (55%), Gaps = 28/459 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGP--SCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            I A++TG   + + I+R+SG       + + +   K+  PR A L       G+ILD G
Sbjct: 8   PIIAIATGNGNAGVGIVRISGEEEDVKALFQKMFPGKEIKPRYAELLPIRDTQGQILDTG 67

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEFSRRAFENG 121
           ++I F +P S+TGE   E  VHGG  ++N I++E+    K   LR A PGEF+ RAF NG
Sbjct: 68  IVIYFRAPFSYTGESVLELQVHGGRVLLNWIVQEVLIFGKEFGLRQALPGEFTERAFLNG 127

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           KIDL++AE++ADLI + +    + +   ++GE S+      D L ++R  +EA LDF E 
Sbjct: 128 KIDLVQAEAVADLIEANSRNAAKAASRSLTGEFSNKVNALNDALINLRVEVEAILDFPE- 186

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E++   S  +    +  ++N + S +   + GEI+R+G ++ ++G +N GKSSL N LA 
Sbjct: 187 EEIDFLSEYQSQEKLEDIQNRLESVLDSARQGEILRDGLRVALVGETNVGKSSLLNYLAG 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +++AIV+DI GTTRD +  DL + G      DTAGIRET+D +E+ GI+RT  E+  AD+
Sbjct: 247 EEIAIVSDIAGTTRDKIQTDLIISGVPFHFVDTAGIRETEDRIEQIGIERTKQEISKADV 306

Query: 302 ILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYST-------YTEEYDHLI 343
           IL +++I  ++            +   K++  I +  K DL ST        +       
Sbjct: 307 ILEIRDIRDQQNKNKDSMQTALKMIKGKDVPIITVLNKVDLISTPLPNTKDVSRGTIIET 366

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCG 401
           S+ TG+G++EL +++  +    F +      + +RH+++L      L+ A+  LN     
Sbjct: 367 SAVTGKGMQELKSELLKLA--GFSENQSIYMARERHIHNLLNVKESLKRAASYLNSTSPQ 424

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L++ AE LR AS  LG+ITG +  + LL  IFS FCIGK
Sbjct: 425 LELFAEELRGASDELGEITGKISSDDLLGKIFSGFCIGK 463


>gi|254447523|ref|ZP_05060989.1| tRNA modification GTPase TrmE [gamma proteobacterium HTCC5015]
 gi|198262866|gb|EDY87145.1| tRNA modification GTPase TrmE [gamma proteobacterium HTCC5015]
          Length = 432

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/434 (36%), Positives = 242/434 (55%), Gaps = 17/434 (3%)

Query: 21  SIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDS 80
            I+R+SGP    + E + +  +  PR A    F+  +G++LD+G+ + FP P S+TGED 
Sbjct: 2   GIVRVSGPQARSMGEQLTRLSECRPRYAHYGPFYDSEGQVLDRGISLYFPGPHSYTGEDV 61

Query: 81  AEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETE 140
            EF  HGG  V+N +L+ + K+   R A PGEF+ RAF N K+DL +AE++ADLI S TE
Sbjct: 62  FEFQGHGGPVVLNLLLKSVFKL-GARPAQPGEFTERAFLNDKMDLAQAEAVADLIESTTE 120

Query: 141 MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
                +   +SG  SS     +D L +IR +IEA LDF E E++      E+   +  L+
Sbjct: 121 QAALAATRSLSGAFSSRIQTLLDSLIYIRLYIEAALDFPE-EEIDFLGDSELAQRMQQLR 179

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            D++S     + G+++R G  +V+LG  NAGKSSL NALA  D AIVTD+ GTTRDVL  
Sbjct: 180 LDVASVKQSVRQGKLLREGMSVVLLGQPNAGKSSLLNALAGDDTAIVTDVAGTTRDVLQQ 239

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKK 312
            + L+G  + I DTAG+R+T D+VE EG++R +  VE AD +LLL +          +  
Sbjct: 240 AIHLDGLPLNIIDTAGLRDTQDVVEAEGVRRAWAAVEQADRVLLLIDAERGFDHGDQAIV 299

Query: 313 EISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
           +     + +F ++  K D           + ++   IS+  GEG++ L   +K  +  K 
Sbjct: 300 DALDRHSTNFDYLWNKIDRLGQAPKIEKKSGQWHLSISASLGEGIDLLSKHLKEAMGYK- 358

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
           ++      + +RH+  L    + +E A+        ++ AE LR A  S+ +ITG    +
Sbjct: 359 QETEGLFIARQRHIESLEAASKAIECAADQLSVGAGELAAEELRQAQESMSQITGEFSSD 418

Query: 427 QLLDIIFSKFCIGK 440
            LL  IFS+FCIGK
Sbjct: 419 DLLGEIFSRFCIGK 432


>gi|148266438|ref|YP_001233144.1| tRNA modification GTPase TrmE [Geobacter uraniireducens Rf4]
 gi|205829152|sp|A5G9V3|MNME_GEOUR RecName: Full=tRNA modification GTPase mnmE
 gi|146399938|gb|ABQ28571.1| tRNA modification GTPase trmE [Geobacter uraniireducens Rf4]
          Length = 455

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 148/455 (32%), Positives = 242/455 (53%), Gaps = 22/455 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGR 59
           ++TI A+ST      + IIR+SG     + + I K+ +    + S R+++G     +   
Sbjct: 4   QDTIAAISTPTGEGGVGIIRVSGRHVLSIADAIFKRNRDGGLQ-SHRFYYGAIIDPVSAD 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+ +++    P S+T ED  E   HGG  VV  IL+ L      RLA PGEF++RAF 
Sbjct: 63  CLDEVMVVFMKGPHSYTREDVLEIQCHGGYLVVQRILD-LVLQQGTRLAGPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL++AE++ D+I S+TE    L+     G LS    +  D +    + IEA +DF 
Sbjct: 122 NGRIDLVQAEAIIDVIRSKTEKSLALAQHQREGLLSQRIARVKDGIVSSLALIEAFIDFP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED+     ++V   +     ++ + ++    G+++R+G  +VI G  N GKSSL N L
Sbjct: 182 E-EDIDVLGIQQVGAHVDCSLTELETLLAGFNEGKVLRDGVSVVIAGKPNVGKSSLLNTL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVT +PGTTRD++   + ++G  VK+ DTAGIRE+DD VE+EGIK +  ++ +A
Sbjct: 241 LREKRAIVTSVPGTTRDLIEEVVTIKGLPVKLLDTAGIRESDDRVEREGIKLSLDKIPSA 300

Query: 300 DLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTG 348
           DL+L + + +       +  +      +FI +  KSD+          +     +S+ TG
Sbjct: 301 DLVLFIIDSSLPFSSEDQAILDVLAPCNFIVVMNKSDICRSFDMPQLPDVPIIAVSTLTG 360

Query: 349 EGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDII 405
           +G++ L + I     +        +   S  RH   L ++   L     N      LD++
Sbjct: 361 DGIDALQDAIFEAFIHNHAVDSREYVAVSQARHRDALQKSRDALLRFRGNLVAGMELDLL 420

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A +LR A  ++G++TG    + +LD+IF +FCIGK
Sbjct: 421 AIDLRDALSAIGEVTGETTADDVLDLIFQRFCIGK 455


>gi|319765051|ref|YP_004128988.1| tRNA modification gtpase trme [Alicycliphilus denitrificans BC]
 gi|317119612|gb|ADV02101.1| tRNA modification GTPase TrmE [Alicycliphilus denitrificans BC]
          Length = 465

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 155/467 (33%), Positives = 238/467 (50%), Gaps = 30/467 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +   ++ I A++T     A+ I+R+SG       + +  +    PR+A    F    GR 
Sbjct: 2   LARHQDPIAAIATAPGRGAVGIVRVSGRGLAPFVQGLLGRSL-QPRQAHYLPFPDAAGRS 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL-----RLANPGEFSR 115
           +D+GL + FP+P S+TGED  E   HGG  V+  +L    +         RLA PGEF+ 
Sbjct: 61  IDQGLALFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQAVLPRLRLAEPGEFTE 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   +SG  S       D L H+R  +EA 
Sbjct: 121 RAFLNDKLDLAQAEAIADLIDASTEAAARSAGRSLSGAFSQEIHGLRDALVHLRMLVEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF E E++      +    +  L+  +++ + +   G ++R G K+VI G  NAGKSSL
Sbjct: 181 LDFPE-EEIDFLRKADARGQLSNLQQTLAAVMQRASQGALLREGIKVVIAGQPNAGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RE+ D VE+ GI R + E
Sbjct: 240 LNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHIIDTAGLRESADEVERIGIARAWDE 299

Query: 296 VENADLILLLKE---INSKKEIS------------FPKNIDFIFIGTKSD-----LYSTY 335
           +  AD +L L +   +++ + I+              +++  I +  K+D       +  
Sbjct: 300 ITQADAVLFLHDLTRLDAPEYIAADALIASTLVQKLSESVPVIDVWNKTDAAARPAPAAT 359

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMA 393
                  +S+ TG+GL+ L  ++  +   +         +  RH+  L     +L    A
Sbjct: 360 AGRAAVQLSARTGQGLDALRRELLRVAGWQ-SAAEGVYIARARHIEALRAVDAHLMEAAA 418

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L      LD++AE LRLA  +L  ITG    + LL +IFS FCIGK
Sbjct: 419 QLESTGPALDLLAEELRLAQSALNAITGEFTSDDLLGVIFSSFCIGK 465


>gi|258648360|ref|ZP_05735829.1| tRNA modification GTPase TrmE [Prevotella tannerae ATCC 51259]
 gi|260851527|gb|EEX71396.1| tRNA modification GTPase TrmE [Prevotella tannerae ATCC 51259]
          Length = 442

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 150/448 (33%), Positives = 244/448 (54%), Gaps = 20/448 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T     AI I+RLSG     + E I  +      K +  +    +G ILD+ +
Sbjct: 2   ETICAIATAPG-GAIGIVRLSGDDAISLTEKILDRN--LQEKVTYAHILD-NGEILDEVI 57

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           + +F  P S+TGE++AE   HG   ++   +E L      + A PGEF++RAF N K+DL
Sbjct: 58  VTIFRQPHSYTGENTAEISCHGSPYILQRTMELLI-AQGCKPARPGEFTQRAFLNHKMDL 116

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE++ADLI++ ++ Q++++M+ M G  S    +  D+L HI S +E +LDFS+ ED++
Sbjct: 117 SRAEAVADLIAARSKAQQKMAMQQMRGNFSKSLSELRDQLLHITSLLELELDFSDHEDLE 176

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                E++     ++  +SS ++  KLG  I++G  + I+G +NAGKS+L NAL  ++ A
Sbjct: 177 FADRSELIALAKTIEEKVSSLLNSFKLGNAIKHGVPVAIVGKTNAGKSTLLNALVGEERA 236

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           +V+DI GTTRD +   +++ G L +  DTAGIR TDDIVE  GI+RTF  +  AD+IL +
Sbjct: 237 LVSDINGTTRDTIEDIVNIGGTLFRFIDTAGIRRTDDIVETMGIERTFQTIAKADIILWV 296

Query: 306 KEINSKKEI---------SFPKNIDFIFIGTKSDL--YSTYTEEYD-HLISSFTGEGLEE 353
            +    K++             +   I +  K+DL       +  D   IS+    G+++
Sbjct: 297 IDAQDSKDVLKELEQQMRQHCDSKKLICVFNKTDLQIPQYIPKGIDTVSISAKKNIGMDK 356

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLA 412
           L + +K  +S         I S+ RH   L +    LE       +    + ++++LR  
Sbjct: 357 LRDLLK--VSTDIAPAEDVIVSNIRHYEALCEARTSLERVQSGLINHLSGEFVSQDLRAC 414

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             SL +I G +  + +L+ IFS FC+GK
Sbjct: 415 IQSLSEIVGDITSQSVLNNIFSHFCVGK 442


>gi|315022654|gb|EFT35679.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Riemerella
           anatipestifer RA-YM]
          Length = 490

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 152/466 (32%), Positives = 247/466 (53%), Gaps = 32/466 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDGR-I 60
           ++++TI A++T     AI IIR+SG +   +   I K K        +L Y F + G  +
Sbjct: 29  NQQDTICALATANGVGAIGIIRVSGDNSINITNTIFKGKDLTKVDSHTLHYGFIVQGEEV 88

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ ++ +F +P+SFT EDS E   HG   +   IL+ L      R+A  GEFS RAF N
Sbjct: 89  IDEVMISIFKAPKSFTTEDSVEISFHGSPFIGKRILDLLI-ANGCRMAKAGEFSMRAFLN 147

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ADLI+SE+E  R++++  + G +S+      + L +  S IE +LDF+E
Sbjct: 148 GRIDLSQAESIADLIASESEAARKVALNQLKGGISNEISILRNDLLNFTSLIELELDFAE 207

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            EDV+     E+   +  LK+ +   +   + G  ++NG ++ I+G  NAGKS+L NAL 
Sbjct: 208 -EDVEFADRTELTQLLQKLKSKLGGLLESFQYGNAVKNGVQVAIIGKPNAGKSTLLNALL 266

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIV+DI GTTRD +   L + G+  +  DTAGIR+T D VE  G+++   ++  AD
Sbjct: 267 KEERAIVSDIAGTTRDTIEEVLHIGGHAFRFIDTAGIRDTADRVESIGVEKAKEKINTAD 326

Query: 301 LILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHL---------- 342
           ++L L +I                  ++  I +  K D  S  TE  D            
Sbjct: 327 ILLYLFDIKDSTPNEIINFITSLERPDLKVILLQNKID-SSNETEINDFWKQLKEVLVPN 385

Query: 343 -------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                  IS+   + +E L N++ S +  + K    +I +++RH   L +++  ++    
Sbjct: 386 FTQTILGISAKEEKNIEILKNELVSYI-EELKTSESTIITNQRHQEALQKSLLSVQKVEE 444

Query: 396 NEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +    +++A  LR A   LG+I+G    +++L  IF KFCIGK
Sbjct: 445 AITNRISTELLAYELRAAMEYLGEISGEFTNDEVLGNIFGKFCIGK 490


>gi|116074031|ref|ZP_01471293.1| tRNA modification GTPase [Synechococcus sp. RS9916]
 gi|116069336|gb|EAU75088.1| tRNA modification GTPase [Synechococcus sp. RS9916]
          Length = 463

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 155/455 (34%), Positives = 249/455 (54%), Gaps = 24/455 (5%)

Query: 6   ETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DG- 58
           +TI AV+T        I++IRLSGP   QV + I          AS R  +G     DG 
Sbjct: 13  DTIVAVATAVAPGQGGIAVIRLSGPQAQQVVQTIAHF-PGQQEWASHRVLYGHVLAADGV 71

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             LD+ L++V  +P SFT ED  E H HGG+  V  +L  + + P +R A PGEFS+RA 
Sbjct: 72  ERLDEVLVLVMQAPRSFTAEDVVEIHCHGGVIAVQRVLARVLEQPGVRRALPGEFSQRAV 131

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL  AE++ DL+++ ++   +L+M G+ G +    G   ++L    S +EA +DF
Sbjct: 132 LNGRLDLTRAEAITDLVAARSQRAAQLAMAGLDGGIQRRIGALRERLLDQLSELEARVDF 191

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D+       +L ++L +++ +   ++ G+ G+ +R G ++ ++G  N GKSSL N 
Sbjct: 192 EE--DLPPLDGPALLRELLAVRDALLELVADGERGDALRTGLRVALVGRPNVGKSSLLNR 249

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L++++ AIVTD+PGTTRD+L  ++ LEG  + + DTAGIR T D VE+ GI R+   + +
Sbjct: 250 LSRRERAIVTDLPGTTRDLLESEIVLEGVPITLLDTAGIRVTTDAVEQLGIARSHDALAS 309

Query: 299 ADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLISSF 346
           ADL+LLL ++       +       P+ ++ + +G K+DL +    E      D  +S+ 
Sbjct: 310 ADLVLLLFDLSEGWTAEDQALLARIPEGVEHLLVGNKADLAAPVQAEGRPLAVDVQLSAQ 369

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDII 405
           TG+G  EL+  +         + P  +  ++R +   +     L+ +  +  +    D  
Sbjct: 370 TGDGEAELVQAMLRR-CGALSEQPLLLALNQRQVDLAAAAAAALQRSEEVAAQGLPWDFW 428

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +LR A  SLG+ITG    E +LD IFS+FCIGK
Sbjct: 429 TIDLRQAIQSLGEITGEELTESVLDRIFSRFCIGK 463


>gi|220930844|ref|YP_002507753.1| tRNA modification GTPase TrmE [Clostridium cellulolyticum H10]
 gi|220001172|gb|ACL77773.1| tRNA modification GTPase TrmE [Clostridium cellulolyticum H10]
          Length = 460

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 150/459 (32%), Positives = 240/459 (52%), Gaps = 25/459 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-----GR 59
           ++TI A+ST      I +IR+SG   F     I +  K      S    +G         
Sbjct: 4   EDTIAALSTPYGTGGIGVIRISGGQAFDTANKIFRSSKTIEEIHSHTVTYGKIVDPKLND 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ LL+    P +FT ED  E H HGGI VVN +LE + K   +R A PGEF++RAF 
Sbjct: 64  VVDEVLLLKMCKPNTFTREDVIEIHCHGGIVVVNRVLELIFK-NGVRPAQPGEFTKRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI+S+T    + ++  + G LS       + L  + + IE  +D+ 
Sbjct: 123 NGRIDLSQAEAIIDLINSKTVESSKAAVSHLEGRLSLRLKSIREVLVGLLAHIEVTVDYP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  D++  + + VL +++ +K ++ +     + G+I+R G  IVI G  N GKSSL N L
Sbjct: 183 EH-DIEEITGENVLENLIKIKEELITLAGTFERGKILREGIDIVIAGKPNVGKSSLLNQL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           +    AIVTDIPGTTRD++   ++++G   KI DTAGIR T+D+VE  G+ R +  +E+A
Sbjct: 242 SGSTKAIVTDIPGTTRDIIEEYVNIKGIPAKIIDTAGIRSTEDVVETIGVNRAYEAIESA 301

Query: 300 DLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTE----------EYDHLI 343
           DLI+ +   ++       + +   KN   + +  K+DL    +           +     
Sbjct: 302 DLIIAVLSADTGVTEEDIQILKMIKNKKSLILINKTDLVEKNSISKIKQQLSECDIVLEA 361

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
           S     G+EEL   I  +            + ++ RH Y + + +  +E A  + E    
Sbjct: 362 SVIKDVGIEELETAISGLFIKGDISSNNEVLLTNARHKYLVDRAINDIEQALNSFETGMP 421

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD++  +++  + S+G+ITG    E +L  IFS+FCIGK
Sbjct: 422 LDMVTIDIKSCADSIGEITGESIDEAVLHNIFSRFCIGK 460


>gi|186684424|ref|YP_001867620.1| tRNA modification GTPase TrmE [Nostoc punctiforme PCC 73102]
 gi|186466876|gb|ACC82677.1| tRNA modification GTPase TrmE [Nostoc punctiforme PCC 73102]
          Length = 464

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 149/458 (32%), Positives = 236/458 (51%), Gaps = 27/458 (5%)

Query: 7   TIFAVSTG--ALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYF-FGLDGRI 60
           TI A++T       ++ I+R+SG     + + +     ++     +    Y       ++
Sbjct: 10  TIAAIATAVVPQQGSVGIVRVSGSEAMALAQTLFHAPGRQVWESHQILYGYIRHPQTQQL 69

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ RAF N
Sbjct: 70  VDEALLLIMKAPRSYTREDVVEFHCHGGIMAVQQVLQ-LCLENGARLAQPGEFTLRAFLN 128

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE +ADL+ +++    + ++ G+ G+L+    Q       I + IEA +DF E
Sbjct: 129 GRLDLTQAEGIADLVGAKSPQAAQTALAGLQGKLAHSIRQLRANCLDILAEIEARIDFEE 188

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D+     K ++++I  +  +I+  ++    GE++R G K+ I+G  N GKSSL NA +
Sbjct: 189 --DLPPLDDKAIISEIEKIAAEITRLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWS 246

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + D AIVTD+PGTTRDV+   L + G  V++ DTAGIRET D VEK G++R+      AD
Sbjct: 247 RSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETTDQVEKIGVERSRRAANAAD 306

Query: 301 LILLLKEINS------KKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFT-- 347
           L+LL  + ++      ++     ++   I +  K DL       T   +  +  S     
Sbjct: 307 LVLLTIDASAGWTEGDREIYEQVQHRPLILVINKIDLVEERQRKTLQSQIPNPNSKIATA 366

Query: 348 ---GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGL 402
               +G++ L   I  I+   K +     +  ++R    L+Q    LE       +   L
Sbjct: 367 AAQNQGIDALEVAILEIVKAEKIQAADMDLAINQRQAAALTQAKISLEQVQTTIVQHLPL 426

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D    +LR A  +LG ITG    E +LD IFSKFCIGK
Sbjct: 427 DFWTIDLRGAIQALGAITGEEVTESVLDRIFSKFCIGK 464


>gi|297182384|gb|ADI18549.1| predicted GTPase [uncultured gamma proteobacterium HF4000_23L14]
          Length = 446

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/446 (35%), Positives = 247/446 (55%), Gaps = 15/446 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T    S I +IR+SGP    +   +    +  PR A    F+  +   +DKG+
Sbjct: 5   ETICALATAIGQSGIGVIRVSGPLSKVIANKVL-NVELEPRVAHYGSFYDEESNQIDKGV 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I F  P+S+TGED  E   HGG++V+  +LE +      RL+ PGEF++RAF NGK+DL
Sbjct: 64  AIYFSGPQSYTGEDVLELQGHGGMSVLRKLLETVI-FFGARLSEPGEFTKRAFLNGKMDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ DLI + ++     ++  ++GE S    Q +  L  +R F+EA +DFS+ E++ 
Sbjct: 123 VQAEAVQDLIQASSDKSALSAVRSLTGEFSEKINQLLRDLIDLRVFVEATIDFSD-EEID 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV   +  LK ++   +     G I+R+G  + I G  NAGKSSL NAL K+  A
Sbjct: 182 FLESHEVSTKLEILKKELLDTLDCANQGAILRDGLHVAIAGKPNAGKSSLLNALTKQPSA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + +EG  + I DTAG+ ++D+I+E+EGI+R   E++NAD++LL+
Sbjct: 242 IVTDIAGTTRDVLKETIHVEGMPLHIIDTAGLHKSDNIIEQEGIRRAHAEIDNADVVLLV 301

Query: 306 KEI-NSKKEISFPKN----IDFIFIGTKSDLY------STYTEEYDHLISSFTGEGLEEL 354
            +  +S  + S   +       I I  K DL         +  + +  +S+  G+G+E L
Sbjct: 302 YDAKDSSADPSILPDVMVSKPIIAIRNKIDLLNAKAGMRQFEGQTEISLSAKFGDGIELL 361

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
              +  +             + KRH+  +  T+  +  A    +    +++AE+LR A +
Sbjct: 362 RQALSDVA-GYNPVGNGVFLARKRHILAIESTLISINSAIEQLEVGASELVAEDLRQAGM 420

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           SLG ITG    + LL  IFS FCIGK
Sbjct: 421 SLGMITGEFSSDDLLGEIFSSFCIGK 446


>gi|157104146|ref|XP_001648272.1| GTP binding protein (mitochondrial), putative [Aedes aegypti]
 gi|108880387|gb|EAT44612.1| GTP binding protein (mitochondrial), putative [Aedes aegypti]
          Length = 493

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 175/476 (36%), Positives = 268/476 (56%), Gaps = 37/476 (7%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLR-YFFGLDGR 59
           +  + TIF +S+G+    ++++R+SG +C  V +   +    P PRKA LR  F      
Sbjct: 18  SSSRPTIFGLSSGSGKCGVAVVRVSGDACRDVMKIKTQSVTLPEPRKAVLRRIFHSKTTE 77

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++DKGL++ FP P SFTGEDS EFHVHGG+AVV+ + + L  +  +RLA PGEF++RAF 
Sbjct: 78  MIDKGLVLWFPGPNSFTGEDSVEFHVHGGVAVVSAMYDSLGSIDGVRLAEPGEFTKRAFY 137

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            GK+DL E E LADLI +ETE QR+ +M   +GELS +Y +  ++L    + IEA +DF+
Sbjct: 138 AGKMDLTEVEGLADLIEAETEAQRKQAMLQANGELSKVYNELRNRLLRCIANIEAYIDFA 197

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E++DV +   + V  D+  +  D+ +H++  + GE +R+G + VI+G  N GKSS  N L
Sbjct: 198 EDQDVGDDVFESVKTDVASIIVDVKAHLNDQRRGERLRSGVRTVIIGAPNVGKSSFVNLL 257

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVEN 298
           + + V+IVT++ GTTRD++    D+ GY V ++DTAG+R ET DI+E EGI R    +  
Sbjct: 258 SNRKVSIVTNVAGTTRDIIESHHDIGGYPVILADTAGLRKETSDIIEHEGITRAKDYLTE 317

Query: 299 ADLILLLKEINSKKEI-----------------------SFPKNIDFIFIGTKSDLYSTY 335
           AD I+L+ +  + +                         +  ++ + + I  K DL S  
Sbjct: 318 ADFIVLIVDAGNLQSYLKSSKKQFDDYLDHYVTSLGFKENIIRDSNCMIIINKVDLLSEE 377

Query: 336 TEEYDH------LISSFTGEGLEELINKIKSILSNKFKKL--PFSIPSHKRHLYHLSQTV 387
                       ++S  TGEGL+ ++ KI   L +            S +R+ +HL   +
Sbjct: 378 FRNAIDRTKNLSMLSCQTGEGLQNVLEKITENLKHLCGNPCRESPNISQQRYRHHLKACI 437

Query: 388 RYLE---MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +YLE       +  +  L I  + LR A   +G ITG VD E++LD+IF  FCIGK
Sbjct: 438 QYLEKYYAYLSHGPNPDLAIATQYLRNAVRCIGMITGNVDTEEILDVIFRTFCIGK 493


>gi|291529193|emb|CBK94779.1| tRNA modification GTPase trmE [Eubacterium rectale M104/1]
          Length = 458

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 154/459 (33%), Positives = 238/459 (51%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-----RKASLRYFFGLDG 58
           + +TI A++T   PS I IIR+SG     V + I K K         +  ++ Y F  DG
Sbjct: 2   QNDTIAAIATAMSPSGIGIIRISGDDALSVIDRIYKSKNNKKKISACQSHTIHYGFIYDG 61

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ ++++  +P ++T ED+ E   HGG+ V+  +LE + K    R A PGEF++RA
Sbjct: 62  DEKIDEVMVLLMKAPNTYTREDTVEIDCHGGVYVMKRVLEAVIK-NGARPAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D+I+S+ +   + S+  + G +     Q  ++L H  +FIE+ LD
Sbjct: 121 FLNGRIDLSQAESVIDVINSKNDFALKSSLSQLGGAVLGSIRQIREQLLHEIAFIESALD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             E   +  +  K           +I S +     G I++ G   VI+G  NAGKSSL N
Sbjct: 181 DPEHISLDGYPQKLRAIVDNEYV-EIDSLLKTSDNGRILKEGINTVIIGKPNAGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L   D AIVTDI GTTRDVL   +++ G  + + DTAGIR T+D+VEK G+K+      
Sbjct: 240 VLVGSDRAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDVVEKIGVKKAMEHAN 299

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYT--------EEYDHLI 343
            ADLI+ + +       N    I+F K+   + +  KSDL S  +        ++    +
Sbjct: 300 EADLIIYVVDSSVVFDDNDYDIINFIKDKKAVILLNKSDLASKVSADDIKKLVDKTVISV 359

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S+    G++EL + IK +  +        I  ++ RH   LS     L++  +  + D  
Sbjct: 360 SAKESSGIDELSDTIKEMFFDGQVSFNDEIYITNIRHKKLLSDAKESLKLVMNSIDDDMP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  + +L  A  SLG I G    + L+D IFSKFC+GK
Sbjct: 420 EDFYSIDLMSAYESLGLIIGESVEDDLMDEIFSKFCMGK 458


>gi|190171214|gb|ACE63677.1| ThdF [Enterobacter helveticus]
          Length = 427

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 147/430 (34%), Positives = 233/430 (54%), Gaps = 21/430 (4%)

Query: 10  AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVF 69
           A +T      + I+R+SG     V + +   K P PR A    F   D   LD+G+ + F
Sbjct: 1   AQATPPGRGGVGILRISGKQARDVAQAVLG-KLPKPRYADYLPFKDSDNTPLDQGIALWF 59

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N K+DL +AE
Sbjct: 60  PGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIARPGEFSERAFLNDKLDLAQAE 119

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++ADLI + +E   R ++  + G  S+     ++ LTH+R F+EA +DF + E++   S 
Sbjct: 120 AIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD-EEIDFLSD 178

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTD
Sbjct: 179 GKIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I GTTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +L + +  
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGT 298

Query: 310 SKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLE 352
           +   +             P+N+    +  K+D+       S         +S+ +GEG+E
Sbjct: 299 TTDAVDPAQIWPDFMARLPQNLPITVVRNKADVTGEPAGLSEVNGHSLIRLSARSGEGVE 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411
            L + +KS +      +     + +RHL  L +   +L+            +++AE LRL
Sbjct: 359 VLRDHLKSSMGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAGELLAEELRL 417

Query: 412 ASVSLGKITG 421
           A  SL +ITG
Sbjct: 418 AQQSLSEITG 427


>gi|296233234|ref|XP_002761924.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 1
           [Callithrix jacchus]
          Length = 492

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 173/464 (37%), Positives = 258/464 (55%), Gaps = 36/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     +++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGVAVIRTSGPASGHALRILTAPRDLPPARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L  L  +P LR A  GEF+RRAF +GK++
Sbjct: 95  LVLWFPGPKSFTGEDCVEFHVHGGPAVVSGVLRALGSVPGLRPAEAGEFTRRAFAHGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQANIEVRALEVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R    +E ADLIL 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 334

Query: 305 LKEINSKKEISFPKNIDF--------------------IFIGTKSDLYSTYTEEYDHLI- 343
           + + +   +++ P + +F                    + +  KSDL ST        + 
Sbjct: 335 MLDAS---DLASPSSCNFLATVVASAGAQSRSSSSQRLLLVLNKSDLLSTEGPGPGPDMP 391

Query: 344 -----SSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLN 396
                S  TGEGL+ L+  +K  L+           + +  RH +HL   +  L      
Sbjct: 392 PHLLLSCVTGEGLDGLLEALKMELAAVCGDPSTGPPLLTRARHQHHLQGCLDALGHYK-- 449

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 450 -QSKDLALAAEALRVARGHLTRLTGGGGTEEILDIIFRDFCVGK 492


>gi|149370691|ref|ZP_01890380.1| tRNA modification GTPase TrmE [unidentified eubacterium SCB49]
 gi|149356242|gb|EDM44799.1| tRNA modification GTPase TrmE [unidentified eubacterium SCB49]
          Length = 465

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 151/465 (32%), Positives = 246/465 (52%), Gaps = 31/465 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDG-R 59
           ++TI A++T A   AI++IRLSG     +   +      KK       ++      +G R
Sbjct: 3   QDTIVALATPAGAGAIAVIRLSGSDAIAIATAMFNAVSGKKLNHQATHTVHLGHIKEGTR 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ L  +F +P+S+TGED  EF  HG   +   I++   K    R+ANPGEF+ RAF 
Sbjct: 63  VVDEVLATIFKNPKSYTGEDVVEFSCHGSNYIQQEIIQLCLK-KGARMANPGEFTLRAFI 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S+++   +L+++ M G  SS   +  ++L +  S IE +LDF+
Sbjct: 122 NGKMDLSQAEAVADLIASDSQASHQLAIQQMRGGFSSEIKKLREELLNFASLIELELDFA 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV   +  E    I  +   +   I     G +++NG  + I+G  N GKS+L NAL
Sbjct: 182 E-EDVAFANRDEFQKLITRITQVLKRLIDSFATGNVLKNGIPVAIVGEPNVGKSTLLNAL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DI GTTRD +  +L++ G   +  DTAGIR+T D +E  GIK+TF ++E A
Sbjct: 241 LNEERAIVSDIAGTTRDTIEDELNIGGIAFRFIDTAGIRDTSDTIEGLGIKKTFEKMEQA 300

Query: 300 DLILLLKEIN--------SKKEISFPKNID----FIFIGTKSD-LYSTYTEEYDHLI--- 343
            ++L L            ++ EI   KN       + +  K D + +    E  ++    
Sbjct: 301 QVVLFLIAATQLLQDKTATQIEIEKIKNKHPQKTLVMVVNKIDQIQTKQISEVKNIHLPQ 360

Query: 344 -------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL- 395
                  S+ TGEG+E L   +   ++    +   +I ++ RH   L + +  +      
Sbjct: 361 KTVLIPISAKTGEGVETLKTTLLDFVNTGALRNNDTIVTNSRHYDALLKALEEIVRVQEG 420

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +   D++A ++R A    G+ITG V  ++LL  IF+ FCIGK
Sbjct: 421 IDNNLSSDLMAIDIRQALYHFGEITGQVTNDELLGNIFANFCIGK 465


>gi|325297682|ref|YP_004257599.1| tRNA modification GTPase mnmE [Bacteroides salanitronis DSM 18170]
 gi|324317235|gb|ADY35126.1| tRNA modification GTPase mnmE [Bacteroides salanitronis DSM 18170]
          Length = 458

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 144/459 (31%), Positives = 234/459 (50%), Gaps = 23/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFGL--- 56
           ++++TI A++T     AI I+R+SGP    +   I        P   +      FG    
Sbjct: 2   NQQDTICAIATAQG-GAIGIVRVSGPDAVTLTGRIFTPIGSTIPLTERKPYTLAFGHIKN 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ L+ VF +P S+TGED+ E   HG   ++  ++  L      R A PGE+++
Sbjct: 61  SKGEIIDEVLVSVFRAPHSYTGEDATEISCHGSAYILQQVMHLLI-GQGCRTAMPGEYTQ 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NGK+DL +AE++ADLI+S +E   RL+M  M G  S    +  ++L H+ S +E +
Sbjct: 120 RAFLNGKMDLSQAEAVADLIASTSEATHRLAMNQMRGGFSRELAKLRNQLLHLTSLMELE 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDFS+ E+++     E+      ++  IS   +    G  I+NG  + I+G +NAGKS+L
Sbjct: 180 LDFSDHEELEFADRTELQALAAQIEQLISHLANSFHAGNAIKNGIPVAIIGETNAGKSTL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL K++ AIV+DI GTTRD++   + L G   +  DTAGIR+T D +E  GI+R+F  
Sbjct: 240 LNALVKEERAIVSDIHGTTRDIIEDTISLNGITFRFIDTAGIRQTQDTIEALGIERSFQA 299

Query: 296 VENADLILLLKEINS---------KKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHL 342
           ++ A +++L+ + +          ++     +    I    K DL  T T    +     
Sbjct: 300 IDRAQIVILVCDKSQGESAFQAFYRQVAGRLEGKQVIVALNKCDLADTPTFLSPQGTVIE 359

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCG 401
           IS+  G+ +  L  K+  + +    +    I ++ RH   L   +  +         +  
Sbjct: 360 ISAKKGQNIIALQEKLVELAALPDIQTGDVIVTNARHYEALIHALAAIRRVQEGLSTNLS 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D I+++LR     L  I G V  +++L  IF  FCIGK
Sbjct: 420 GDFISQDLRECIFHLSDIVGDVTTDEVLGSIFEHFCIGK 458


>gi|298293756|ref|YP_003695695.1| tRNA modification GTPase TrmE [Starkeya novella DSM 506]
 gi|296930267|gb|ADH91076.1| tRNA modification GTPase TrmE [Starkeya novella DSM 506]
          Length = 458

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 253/448 (56%), Gaps = 15/448 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDK 63
           ++TI AVS+G    A+++IR+SGP+  +    +  +  P PR+A L        G +LD+
Sbjct: 14  RDTIAAVSSGTG-GAVAVIRISGPAAGEALVALADR-LPEPRRAMLAKLRDPSSGEVLDE 71

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GL + FP P S TGED AE  +HGG AVV  +L  L  +P LR A  GEF+RRAF NG++
Sbjct: 72  GLALWFPGPRSATGEDMAELQIHGGRAVVAAVLGALFALPGLRPAERGEFTRRAFLNGRL 131

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE LADLI++ETE QRRL+     G L     +W  +L    + IEA +DFS+EED
Sbjct: 132 DLTQAEGLADLIAAETEGQRRLAFAHAFGHLGQRVEEWRRRLIRAMALIEAGIDFSDEED 191

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   +      ++  L  ++ + ++  + G ++R G  I I G  NAGKSSL NALA ++
Sbjct: 192 VPAEARVMARPEVEALLGELDAALAD-RRGAMVREGALIAIAGLPNAGKSSLINALAARE 250

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AIV+D PGTTRDVL + LDL G+ V + DTAG+RE +  VE EGI+R    +  ADL+L
Sbjct: 251 IAIVSDEPGTTRDVLEVALDLSGHKVTLVDTAGLREAEGKVEAEGIRRAHARIAEADLVL 310

Query: 304 LLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTE-----EYDHLISSFTGEGLE 352
            + +        ++ +I      +   +  K D            +    IS+  G GLE
Sbjct: 311 WVHDAAEGPPPVARPQIEAAAGAELWLVANKLDEVGAVPPTGGWTDRAFAISAKYGTGLE 370

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            LI+ + + ++ + +         +RH     +   +L +A         +++AE LRLA
Sbjct: 371 ALIDAVGAFVAERARGAEHPALIRERHRMSALEAAGHLRVALWEWDCLDDELLAEELRLA 430

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +LG++TG + VE LLD++F +FCIGK
Sbjct: 431 GRALGRMTGTIGVEDLLDVVFREFCIGK 458


>gi|218129883|ref|ZP_03458687.1| hypothetical protein BACEGG_01465 [Bacteroides eggerthii DSM 20697]
 gi|217987993|gb|EEC54318.1| hypothetical protein BACEGG_01465 [Bacteroides eggerthii DSM 20697]
          Length = 461

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 142/465 (30%), Positives = 236/465 (50%), Gaps = 29/465 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-----SLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP   ++   I        R       +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGCIRVSGPEAIEITSRIFTPAISNKRLEESKPYTLTFGRI 57

Query: 56  LDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            +G  I+D+ L+ +F +P S+TGE+S E   HG   ++  +L+ L K    R+A PGE++
Sbjct: 58  HEGSEIIDEVLVSLFRAPHSYTGENSTEITCHGSAYILQKVLQLLIK-NGCRMAQPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL+M  M G  S       ++L H  S IE 
Sbjct: 117 QRAFLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTTLRNQLLHFTSLIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ E+++     E+      ++  I   ++   +G  I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSDHEELEFADRSELCLLADNIEKVIVRLVNSFNVGNAIKNGVPVAIIGETNAGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF 
Sbjct: 237 LLNVLLNEEKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQ 296

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD----- 340
           +++ A+++L + +           S + +   +    I +  K DL +    +       
Sbjct: 297 KLDQAEIVLWMIDATNAQTQITQLSSQLLPRCRAKQLILVYNKVDLVANIQNDIPTNFPD 356

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                +IS+   E +EEL   + +            I ++ RH   L+  +  +      
Sbjct: 357 DVKSIVISAKKREHIEELQQMLITSAHLPTITQNDVIVTNVRHYEALNNALEAIHRVQEG 416

Query: 397 E-KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +   D +++++R     L  I G V  + +L  IF  FC+GK
Sbjct: 417 LVNNLSGDFVSQDIRECIFHLSDIAGEVTNDMVLQNIFQHFCVGK 461


>gi|188996901|ref|YP_001931152.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931968|gb|ACD66598.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 447

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/454 (35%), Positives = 250/454 (55%), Gaps = 21/454 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGR 59
           MN  K+TI A +T  +PSAISI+R+SG    ++   I    +   PRK      F   G 
Sbjct: 1   MN--KDTIVANATPLIPSAISIVRISGDKALEIGRKIFSLPENITPRKVYFGKIFNNKGE 58

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+GL + F  P+SFTGED  E + HG + VV  ILE    M   RLA PGEF+ RAF 
Sbjct: 59  IIDEGLFVYFQKPKSFTGEDLVEIYPHGSVPVVKSILEACF-MYGARLARPGEFTERAFL 117

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGKIDLL+AE++ADLI++++E   ++++  + G+LS       +KL ++ S IEA+++F 
Sbjct: 118 NGKIDLLQAEAIADLINAKSERAAKIAVSILEGKLSKQINILREKLINLISLIEAEINFP 177

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  DV+   S  +++ +  +K+ I   ++  K G +I+ G K+ I+G  N GKSSLFNAL
Sbjct: 178 E--DVEEIDSSLIISQLEEVKSQIDKLLASYKKGNLIKEGIKLAIVGRPNVGKSSLFNAL 235

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + AIV++I GTTRD +   L ++   V + DTAG+R+T+D +EK GI++   ++  A
Sbjct: 236 VGYERAIVSEIQGTTRDFIEESLKIKDIPVILLDTAGLRDTEDKIEKIGIEKAQEKINEA 295

Query: 300 DLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTE-----EYDHLISSFTG 348
           D+IL + + +S      KK     K+   I +  KSDL +   +     +     S    
Sbjct: 296 DIILFVIDASSGFTEEDKKIYDKIKDKPHIIVVNKSDLNNKPIDFFEKYDNIVYTSIINN 355

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC--GLDIIA 406
           +G++EL  KI + L     +    +  + R    L Q    +E    +        +I+ 
Sbjct: 356 QGIKELEEKIITSL--GIIEKEDDLFINLRQSTLLKQAKEKIEEIENHINYLINNKEILM 413

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++ A   L ++ G +  E +LD IFSKFCIGK
Sbjct: 414 IYIQEALNYLDEVVGAISTEDVLDNIFSKFCIGK 447


>gi|73663753|ref|YP_302534.1| tRNA modification GTPase TrmE [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72496268|dbj|BAE19589.1| putative tRNA modification GTPase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 460

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 146/460 (31%), Positives = 243/460 (52%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI ++ST     AI I+RLSG     + + + K K+      S    +   G I+D   
Sbjct: 5   DTITSISTPMGEGAIGIVRLSGVDAVDIADKLYKGKERLEDVTSHTINY---GHIIDPES 61

Query: 66  LIV--------FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             V          +P++FT ED  E + HGGI  +N ILE L      R+A+PGE+++RA
Sbjct: 62  NEVVEEVMVSVLRAPKTFTREDIVEINCHGGILTINRILE-LTMTYGARMADPGEYTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS +  +    +  I + +E ++D
Sbjct: 121 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDMIKRQRQSILEILAQVEVNID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 181 YPEYDDVEDATTEVLLGKSNEIKTEINKLLDTGTQGKIMREGLSTVIVGKPNVGKSSMLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++PGTTRD L   +++ G  +++ DTAGIR+T+DIVE+ G++R+   + 
Sbjct: 241 NLIQDNKAIVTEVPGTTRDTLEEYVNVRGVPLRLVDTAGIRDTEDIVERIGVERSRKALG 300

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-------- 343
            ADLIL +   N       +K     KN D I I  K DL      +    +        
Sbjct: 301 EADLILFVLNYNERLTDEDRKLYEVIKNEDAIVIVNKMDLDKHLDLDEVKDMIGDMPLIQ 360

Query: 344 -SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
            S    EG+++L  +I+ +      +    +  S+ RH+  L Q    ++ A    E   
Sbjct: 361 TSMLKQEGIDQLEIQIRDLFFGGDVQNQDMTYVSNSRHISLLKQARNTIQDAIDAAESGV 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 421 PMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 460


>gi|297539957|ref|YP_003675726.1| tRNA modification GTPase TrmE [Methylotenera sp. 301]
 gi|297259304|gb|ADI31149.1| tRNA modification GTPase TrmE [Methylotenera sp. 301]
          Length = 449

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/448 (35%), Positives = 251/448 (56%), Gaps = 19/448 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T +    I ++R+SGP   Q+   +     P PR A+   F   +G ++D+G+
Sbjct: 8   DTIAAIATASGAGGIGVVRVSGPFSGQIATGVLG-HIPAPRHAAYLDFKQANGDLIDRGI 66

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I +P+P S+TGED  E   HGG A++  +L    ++   R A PGEF+RRA+ N KIDL
Sbjct: 67  AIYYPNPHSYTGEDVLELQAHGGTALMQILLARCIEL-GARQAEPGEFTRRAYLNDKIDL 125

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI++ T    + ++  +SGE S      + KL  +R F+EA LDF E E++ 
Sbjct: 126 AQAEAVADLINAATAEAAKSAVRSLSGEFSQRINTLLLKLIDLRMFVEACLDFPE-EEID 184

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +   V + +  +  ++++  ++ K G ++R G  +V++G  N GKSSL N LA +++A
Sbjct: 185 FITQGRVADKLATIIVELNAVFAKAKQGSLLREGINVVLVGQPNVGKSSLMNQLAGEEIA 244

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT I GTTRD +   + + G  + + DTAG+RETDD VEK GI+RT+   ++A++ LLL
Sbjct: 245 IVTSIAGTTRDTIKNAIQINGVPLHVIDTAGLRETDDEVEKFGIERTWRAAQSANIALLL 304

Query: 306 KEI-----NSKKEI--SFPKNIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEGLE 352
            +       ++K I    P+ I  I++  K D      L +         +S+ TG GL+
Sbjct: 305 VDAAHGITETEKSILARLPQEIRKIWVHNKIDVANEPALVAEKDGAMHIYLSAKTGAGLD 364

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            L + +   L+           +  RHL  LSQ   +L  AS  E+    ++IAE LR++
Sbjct: 365 LLKSHLLK-LAGYENNSEGVFMARARHLEALSQVQIHLNFAS--EQINSAELIAEELRIS 421

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +L  ITG    + LL  IFSKFCIGK
Sbjct: 422 QDALSSITGEFTPDDLLGEIFSKFCIGK 449


>gi|82582309|sp|Q49UI4|MNME_STAS1 RecName: Full=tRNA modification GTPase mnmE
          Length = 459

 Score =  401 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 146/460 (31%), Positives = 243/460 (52%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI ++ST     AI I+RLSG     + + + K K+      S    +   G I+D   
Sbjct: 4   DTITSISTPMGEGAIGIVRLSGVDAVDIADKLYKGKERLEDVTSHTINY---GHIIDPES 60

Query: 66  LIV--------FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             V          +P++FT ED  E + HGGI  +N ILE L      R+A+PGE+++RA
Sbjct: 61  NEVVEEVMVSVLRAPKTFTREDIVEINCHGGILTINRILE-LTMTYGARMADPGEYTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D I S+T+   +++M  + G LS +  +    +  I + +E ++D
Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDMIKRQRQSILEILAQVEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV++ +++ +L     +K +I+  +  G  G+I+R G   VI+G  N GKSS+ N
Sbjct: 180 YPEYDDVEDATTEVLLGKSNEIKTEINKLLDTGTQGKIMREGLSTVIVGKPNVGKSSMLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + + AIVT++PGTTRD L   +++ G  +++ DTAGIR+T+DIVE+ G++R+   + 
Sbjct: 240 NLIQDNKAIVTEVPGTTRDTLEEYVNVRGVPLRLVDTAGIRDTEDIVERIGVERSRKALG 299

Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-------- 343
            ADLIL +   N       +K     KN D I I  K DL      +    +        
Sbjct: 300 EADLILFVLNYNERLTDEDRKLYEVIKNEDAIVIVNKMDLDKHLDLDEVKDMIGDMPLIQ 359

Query: 344 -SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
            S    EG+++L  +I+ +      +    +  S+ RH+  L Q    ++ A    E   
Sbjct: 360 TSMLKQEGIDQLEIQIRDLFFGGDVQNQDMTYVSNSRHISLLKQARNTIQDAIDAAESGV 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++  +L      LG+I G    ++L+D +FS+FC+GK
Sbjct: 420 PMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459


>gi|189426684|ref|YP_001953861.1| tRNA modification GTPase TrmE [Geobacter lovleyi SZ]
 gi|189422943|gb|ACD97341.1| tRNA modification GTPase TrmE [Geobacter lovleyi SZ]
          Length = 460

 Score =  401 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 155/459 (33%), Positives = 239/459 (52%), Gaps = 25/459 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFG-----LD 57
           ++TI A++T      + I+R+SGP   Q+   + K    K      S R F+G     LD
Sbjct: 4   RDTIAAIATPLGSGGVGIVRVSGPDAEQIGRKLFKGSGTKNGGGFESHRLFYGRLVNPLD 63

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+G+ ++  +P S+T ED  E H HGG  +V  +L+        RLA PGEF+RRA
Sbjct: 64  DGLIDEGMAVLMRAPRSYTREDVLELHCHGGYYLVRAVLQACISA-GARLAEPGEFTRRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ DLI+S TE    L+     G LS         L    + +EA +D
Sbjct: 123 FLNGRIDLAQAESVMDLIASRTERSLSLAQSQREGHLSRALAALKAPLVESLALVEAHID 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E+E V     + +   I  +   IS  ++    G+++R+G  +++LG  NAGKSSL N
Sbjct: 183 FPEDE-VDPAVFEAIETGIATVSAGISRLLATFASGKVLRDGVSVLLLGLPNAGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEV 296
           AL+  D AIV+ +PGTTRD++   + L+G  VK+ D AGIR    D VE+EG++R   + 
Sbjct: 242 ALSGTDRAIVSALPGTTRDLIEETVSLQGLPVKVIDAAGIRAHHADCVEQEGVRRALDKA 301

Query: 297 ENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTY------TEEYDHLIS 344
             ADL+LLL +  +       +       + ++ + TKSDL                 +S
Sbjct: 302 SEADLLLLLVDGTAPLSDELLELATSLAALPYLLVVTKSDLPQLLDLSGLAAPLGVCSVS 361

Query: 345 SFTGEGLEELINKIKSILSN--KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCG 401
           + +  G++ L  +I         F     ++ S+ RH   L +  R L+  + N+     
Sbjct: 362 AKSRAGIDRLAAQIYDHFVQSSAFSSDAAAVISNVRHRDVLVRAQRSLQDFADNQSLGLP 421

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++A +LR A  +LG+ITG    + LLD+IFS FCIGK
Sbjct: 422 PELLALDLRTALAALGEITGETTTDDLLDLIFSSFCIGK 460


>gi|114322028|ref|YP_743711.1| tRNA modification GTPase TrmE [Alkalilimnicola ehrlichii MLHE-1]
 gi|122310594|sp|Q0A4L6|MNME_ALHEH RecName: Full=tRNA modification GTPase mnmE
 gi|114228422|gb|ABI58221.1| tRNA modification GTPase trmE [Alkalilimnicola ehrlichii MLHE-1]
          Length = 444

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 156/445 (35%), Positives = 250/445 (56%), Gaps = 16/445 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      +++IR+SGP+   +   +  +  P PR+A L  F    G  LD+GL+
Sbjct: 5   TICALATPPGRGGVAVIRVSGPAVPAIARALAGR-LPEPRRAVLARFCDAGGDTLDEGLM 63

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP+P SFTGED  E   HGG  VV+ +L  L  +     A PGEFS RAF NG++DL 
Sbjct: 64  LYFPAPRSFTGEDVLELQGHGGEVVVDRLLRRLHAL-GAHPARPGEFSERAFLNGRMDLT 122

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE++ADLI++++E   + ++  + G       + + ++T +R  +EA +DFS+ E++  
Sbjct: 123 QAEAIADLIAADSEASAQAALRSLEGAFGDAVRELVARVTRLRVQVEAAIDFSD-EEIDF 181

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            + + V   I  L + + +   +   G ++R+G ++V+ G  NAGKSSL NAL + D AI
Sbjct: 182 LADEAVAGQIGALIDQLQALRDKAGQGRVLRDGMQVVLAGPPNAGKSSLLNALTEDDSAI 241

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT++PGTTRD+L   L ++G  + + DTAG+R+  D +E EGI+R    +  AD +LL++
Sbjct: 242 VTEVPGTTRDLLREHLHIDGMPLHVIDTAGLRDDPDRIEAEGIRRARAAMAEADRVLLIQ 301

Query: 307 EIN----SKKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHLISSFTGEGLEELIN 356
           +I         ++ P +I    +  K DL           +E    +S+ TG GL  L +
Sbjct: 302 DIREPPIDPAALALPGDIPLTRVYNKVDLSDEAPGPRRAGDEVAIAVSALTGVGLPALRD 361

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDIIAENLRLASVS 415
            +KS++   + +      + +RHL  L++   +L +A     ++   +I AE LRL   +
Sbjct: 362 HLKSVM--GYGEAGSHFSARRRHLDALARAADHLALARRALVEEMAGEIAAEELRLVQHN 419

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG+ITG    E LL  IFS FCIGK
Sbjct: 420 LGEITGEFTSEDLLGEIFSSFCIGK 444


>gi|291547599|emb|CBL20707.1| tRNA modification GTPase trmE [Ruminococcus sp. SR1/5]
          Length = 458

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 156/459 (33%), Positives = 241/459 (52%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGL---D 57
           E+ TI A+ST    S I I+R+SGP  F++   + +    KK      S    +G    +
Sbjct: 2   EETTIAAISTAMSASGIGIVRISGPEAFEIASGVYRSKGGKKSLKNVPSHTIHYGYIYDN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ L++    P ++TGED+ E   HGG+  +  +LE + K     +A PGEF++RA
Sbjct: 62  EEMVDEVLVMAMRGPRTYTGEDTIEIDCHGGVLAMKKVLETVLK-NGAIIAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I S+ E   + S+  + G +     Q  +KL +  ++IE+ LD
Sbjct: 121 FLNGRIDLSQAEAVMDVIQSKNEYSLKNSVGQLKGSVRKNVQQIREKLLYHIAYIESALD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             E  D+  +S +E+   +   K  I + +     G+II+ G + VILG  NAGKSSL N
Sbjct: 181 DPEHYDLTGYS-EELEQIVAEEKEKIQNLLKTAGDGKIIQEGIRTVILGKPNAGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIVTDI GTTRDVL   ++L G  +KI+DTAGIR+T+DIVEK G+ +      
Sbjct: 240 LLLGEDRAIVTDIAGTTRDVLEEYINLHGITLKIADTAGIRQTEDIVEKIGVSKAKEMAA 299

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLI 343
           +ADLIL + +       N ++ I   +    I + +K+DL S    E            I
Sbjct: 300 DADLILYVVDSSVPLDENDEEIIKILQEKKTIVLYSKTDLESAIDIEDLKSRINQPVIPI 359

Query: 344 SSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S+    G+ +L  KI+ +  +           +++RH   L +    L +     E    
Sbjct: 360 SAKEETGITDLEEKIREMFFSGEIDFNDEVYITNERHRQELLKAQESLSLVENSIESGMP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  + +L  A  SLG+I G    E L++ IFSKFC+GK
Sbjct: 420 EDFYSIDLTDAYESLGRILGESLGEDLVNEIFSKFCMGK 458


>gi|325519719|gb|EGC99039.1| tRNA modification GTPase TrmE [Burkholderia sp. TJI49]
          Length = 464

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/466 (32%), Positives = 239/466 (51%), Gaps = 29/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSC-FQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T A    I ++R+S    G +    + + +C  +   PR AS   F  
Sbjct: 2   LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCG-QPLAPRHASYVPFLD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 61  AHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D + ++R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVINLRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPE-EEIDFLEAADARGKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N LA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VE+ GI RT
Sbjct: 240 SSLLNVLAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIART 299

Query: 293 FLEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDL---------YSTYT 336
           + E+E AD++L L +  +            FP  +  + +  K+DL          +   
Sbjct: 300 WSEIERADVVLHLLDSRTGMTADDVAIAARFPDGVPVVRVLNKTDLTGVPASVEHPAAEG 359

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS--QTVRYLEMAS 394
           +  D  +S+  G+G++ L  ++  I   +         + +RHL  L   Q         
Sbjct: 360 DLTDVHLSAKRGDGIDLLRAELLRIAGWQAG-AEGVYLARERHLIALRAAQAHLAHAADH 418

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++   LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464


>gi|90194140|gb|ABD92631.1| ThdF [Pasteurella canis]
          Length = 436

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 151/439 (34%), Positives = 232/439 (52%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      I I+R+SGP   +V   +   K P PR A    F  LDG ILD+G+ + F +P
Sbjct: 1   TAPGRGGIGILRVSGPKSVEVANAVLG-KCPKPRVADYLPFKDLDGTILDQGIALYFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+DL +AE++A
Sbjct: 60  HSFTGEDVLELQGHGGQVVLDLLLKRILQIEGVRLARPGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ AIVTDI G
Sbjct: 179 EAHLNEIILQLDKVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD ILL+ +     
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDSTEPN 298

Query: 313 E-----------ISFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLEELI 355
                          P  I    I  K+DL        +        +S+ T +G++ L 
Sbjct: 299 NQDLETIRVEFLAKLPATIPITMIRNKADLSGEIEGLKEQSGYTVITLSAKTQQGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASV 414
             +K  +  +         + +RHL  L +   +L    +        +++AE LR+   
Sbjct: 359 EHLKQSMGYQ-TNTEGGFLARRRHLEALEKAAHHLRQGHIQLTQFYAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
            L +ITG    + LL  IF
Sbjct: 418 HLSEITGQFTSDDLLGNIF 436


>gi|148245045|ref|YP_001219739.1| tRNA modification GTPase TrmE [Candidatus Vesicomyosocius okutanii
           HA]
 gi|166234830|sp|A5CVJ3|MNME_VESOH RecName: Full=tRNA modification GTPase mnmE
 gi|146326872|dbj|BAF62015.1| tRNA modification GTPase [Candidatus Vesicomyosocius okutanii HA]
          Length = 447

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 161/451 (35%), Positives = 252/451 (55%), Gaps = 15/451 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  K TI A+++      I I+R+SGP C  + + +     P PR A    FF  +   
Sbjct: 1   MNSSKTTICALASSVGKGGIGIVRVSGPLCKVIAKKMLGF-IPKPRYAYYGLFFDQESTE 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +DKG+ + FP P SFTGED  EF  HGG+  +  +LE    M   +LA  GEFS+R+F N
Sbjct: 60  IDKGIALFFPKPYSFTGEDVLEFQGHGGMIGMRLLLESAISM-GAKLAESGEFSKRSFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL++AE+++D+I++ ++   + +   +SG+ S+        +  +R F+EA +DFS+
Sbjct: 119 GKMDLVQAEAISDMINANSKRASKSAFRSLSGDFSNQINGLTKSIIELRVFVEATIDFSD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++      +V   I  +K  I + +     G I+R G  + I G  NAGKSSL NAL 
Sbjct: 179 -EEIDFLQFDQVKCKIKDIKQTIETILKSATQGIILREGLNVAIAGKPNAGKSSLLNALT 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++  AIVTDI GTTRDVL   + + G  + I DTAG+R + D +EKEGIKR   E+E+AD
Sbjct: 238 QESSAIVTDIAGTTRDVLKETIHVNGVPLSIIDTAGLRNSHDKIEKEGIKRANFEIEHAD 297

Query: 301 LILLLKEI-NSKKEIS-FPKNID---FIFIGTKSDLYS------TYTEEYDHLISSFTGE 349
           ++L++ +  + K ++S  PKNI+    + I  K DL S         +     +S+   E
Sbjct: 298 VVLMVFDAQDDKPDLSILPKNINDQSLLLIKNKVDLTSGAIKREVINDIVQLSVSAKYSE 357

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           G++ L  ++ +I S         + + +RH+  L  ++  +  A +  +   ++++AE+L
Sbjct: 358 GIKLLRKELSNI-SGLEDLSEGVVLARRRHIIALEASLVSIGNAIMQLEIGAIELMAEDL 416

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R A   +G ITG    + LLD IFS FCIGK
Sbjct: 417 RFAGQFMGSITGEFSSDDLLDEIFSSFCIGK 447


>gi|225024775|ref|ZP_03713967.1| hypothetical protein EIKCOROL_01662 [Eikenella corrodens ATCC
           23834]
 gi|224942482|gb|EEG23691.1| hypothetical protein EIKCOROL_01662 [Eikenella corrodens ATCC
           23834]
          Length = 455

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 164/443 (37%), Positives = 240/443 (54%), Gaps = 22/443 (4%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESF 75
               + +IRLSG     + + I   K P PR+A    F    G  +D GLL+ FP+P SF
Sbjct: 17  GQGGVGVIRLSGKQLLPLAQQISGGKTPQPRRALHTDFVDAAGEAIDNGLLLYFPAPASF 76

Query: 76  TGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLI 135
           TGED  E H HGG  V+  +L+   ++   + A PGEF++RAF NGK+DL +AES+ADLI
Sbjct: 77  TGEDVIELHGHGGRVVLQMLLQRCFEL-GAQPAEPGEFTKRAFLNGKLDLAQAESVADLI 135

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            + ++   RL++  + G  S    + +D+L  +R  +EA LDF E ED+   +  +V   
Sbjct: 136 DAASQSAARLAVRSLKGAFSQQIHELVDELITLRMLVEATLDFPE-EDIDFLAEAKVDER 194

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +  L+  +   ++Q + G I+R G  +V++G  N GKSSL NALA +DVAIVTDI GTTR
Sbjct: 195 LAALQERLVRVLAQAEQGAILREGMNVVLVGAPNVGKSSLLNALAGEDVAIVTDIAGTTR 254

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----- 310
           D +   + LEG  V I DTAG+R+T D VE+ GI+R+   V+ AD+ L+L + N      
Sbjct: 255 DTVREQITLEGIPVHIIDTAGLRDTTDPVEQIGIERSRQAVQQADVALILIDPNEGLNEA 314

Query: 311 --KKEISFPKNIDFIFIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINK 357
             K     P  +  I I  K DL     E  +             +S+  G GL+ L   
Sbjct: 315 TCKILAQLPPGLKRIEIRNKIDLSGEAAESCEQSGQPSGADTLIKLSAKNGAGLDLLKQA 374

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           +   +  +  +      +  RHL  L      LE+A+L  +   L++ AE+LRLA  +  
Sbjct: 375 LLQQIGWQ-GESESLFLARSRHLRALEAAQAELELAALCGRHQ-LELFAEHLRLAQNACN 432

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
            ITG  + + LL +IFS+FCIGK
Sbjct: 433 TITGEFNADDLLGVIFSRFCIGK 455


>gi|71083056|ref|YP_265775.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1062]
 gi|123647187|sp|Q4FNR7|MNME_PELUB RecName: Full=tRNA modification GTPase mnmE
 gi|71062169|gb|AAZ21172.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 443

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 183/443 (41%), Positives = 278/443 (62%), Gaps = 10/443 (2%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDKGL 65
           TI+A+STG   S I+I+R+SG    +V + +     P  R A+LR         ++D+G+
Sbjct: 2   TIYALSTGPGISGIAIVRVSGKDTKKVIKLLTNAALPETRVATLRKINKINTSELIDEGI 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP PES+TGED AEFH+HG  AV++ +   ++K+ N RLA+PGEF++ AF+NGKI+L
Sbjct: 62  ILWFPGPESYTGEDMAEFHIHGSKAVIDALHHSISKIKNCRLADPGEFTKLAFQNGKINL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           L+AES+ADLIS+ETE+QR+ +++ M+G+ +  +    +KL  I S +EA +DF + ED+ 
Sbjct: 122 LKAESIADLISAETEIQRQQAIKIMNGKSADKFNNLREKLLKILSHVEAKIDFPD-EDLP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
               K +      +  +I   +   K+GE IR G+KI I+G +NAGKSSL N L+ +DVA
Sbjct: 181 EDILKNIKKISNEVILNIKKILDDQKVGERIREGFKIAIIGPTNAGKSSLLNHLSNRDVA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++I GTTRDV+   L+++GY V +SDTAGIR++ + +EK+GIK    + +NADL L++
Sbjct: 241 IVSEIAGTTRDVIETHLNIDGYPVVVSDTAGIRDSKNEIEKKGIKLALDKADNADLKLIV 300

Query: 306 KEINS---KKEISFPKNIDFIFIGTKSDLYST----YTEEYDHLISSFTGE-GLEELINK 357
            +  S   K  +    + + I +  KSDL +       + Y+H++ S      LE+LI+K
Sbjct: 301 IDAKSIDFKGVLKELMDENAILVINKSDLLNKDLNSEIKNYEHVLISVKNNLNLEDLISK 360

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           IK+ L NKF      + +  RH  HL Q++  L+      +    D  AE+LRLA+  LG
Sbjct: 361 IKNKLKNKFITSEDILITRARHRQHLEQSLNCLKNFEEKNEAEDFDKAAEDLRLATRHLG 420

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
            I G VDVE++L  IF+ FCIGK
Sbjct: 421 MIVGKVDVEEILGSIFNDFCIGK 443


>gi|282889533|ref|ZP_06298075.1| hypothetical protein pah_c001o004 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500546|gb|EFB42823.1| hypothetical protein pah_c001o004 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 476

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 134/448 (29%), Positives = 219/448 (48%), Gaps = 15/448 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGRILDK 63
           +TI A++T      ++IIR+SG +  +V      +                  +G  +D 
Sbjct: 31  DTIAAIATPPGEGGVAIIRISGNAAIEVASRCFSRPVEGLPTHTVQYGKIKNREGECVDH 90

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            LL+   +P S+TGE + E H HGG  +   +L+ + +    R A PGEF+ +AF NGK+
Sbjct: 91  VLLLPMHAPRSYTGEHTVEIHCHGGSLIARRVLQTVLEA-GARAARPGEFTFKAFMNGKL 149

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ +LI ++ E     +   + G L+     +   L  I + +EA +DF E E 
Sbjct: 150 DLAQAEAVQELIGAKNEKALHAAGSQLQGALTRKISTFQHGLNDIAAILEAWVDFPE-EG 208

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++  + +E+   +      +    +    G+I+R+G  + ++G  N GKSSL NAL  KD
Sbjct: 209 LEFATMEEIQVTLREAIEAMQKLAATFHNGKILRDGVSLCLIGCPNVGKSSLMNALLGKD 268

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV+ I GTTRD+L   L L G   ++ DTAGIR++D+IVE EGI+R+   ++ ADLIL
Sbjct: 269 RAIVSAIAGTTRDILEDHLKLNGLNFRLLDTAGIRDSDEIVEAEGIRRSRQAIQEADLIL 328

Query: 304 LLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEEL 354
            + +       +    +    +   I +  K D+              +S+   +GL+ L
Sbjct: 329 FVLDSSRGLQADDHLLMQQIPHEKTIGVWNKIDIQKPEMTPLPFSTVCVSAQERQGLDTL 388

Query: 355 INKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLA 412
              I  ++  N        + +  RHL  L+Q + + +       D    + +  ++R  
Sbjct: 389 HETIDQVIWKNGMPDQQEVVITSMRHLQALTQAILFAQNVHDGLTDNLSPEFLCVDMRQC 448

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LGKI G    E +L  IFSKFCIGK
Sbjct: 449 LRELGKIIGTNVTEDILSSIFSKFCIGK 476


>gi|167762630|ref|ZP_02434757.1| hypothetical protein BACSTE_00987 [Bacteroides stercoris ATCC
           43183]
 gi|167699736|gb|EDS16315.1| hypothetical protein BACSTE_00987 [Bacteroides stercoris ATCC
           43183]
          Length = 461

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 142/465 (30%), Positives = 236/465 (50%), Gaps = 29/465 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-----KKKPFPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP   ++   I       ++    +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGCIRVSGPEAIEITSCIFTPAATNRELGDSKPYTLTFGRI 57

Query: 56  LDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            DG  ++D+ L+ +F +P S+TGE+S E   HG   ++  +L+ L K    R+A PGE++
Sbjct: 58  YDGSEVIDEVLVSLFRAPHSYTGENSTEITCHGSAYILQKVLQLLIK-NGCRMAAPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL+M  M G  S       D+L H  S IE 
Sbjct: 117 QRAFLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELATLRDQLLHFTSLIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ E+++     E+      ++  I+  ++   +G  I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSDHEELEFADRSELCQLANNIEKVIARLVNSFNVGNAIKNGVPVAIIGETNAGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV+DI GTTRD++   +++ G   +  DTAGIRET D +E  GI+RTF 
Sbjct: 237 LLNVLLNEDKAIVSDIHGTTRDIIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQ 296

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD----- 340
           +++ A+++L + +           + + +   +    I +  K+DL              
Sbjct: 297 KLDQAEIVLWMIDATNAQAQITQLAGQLLPRCERKQLILVYNKADLVDNIQNSIPDNFPD 356

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                 +S+   E +EEL   + +            I ++ RH   L+  +  +      
Sbjct: 357 NVQSITLSAKKREHIEELQRMLITSAHLPTITQNDVIVTNVRHYEALNNALEAIHRVQEG 416

Query: 397 E-KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +   D I++++R     L  I G V  + +L  IF  FCIGK
Sbjct: 417 LTNNISGDFISQDIRECIFHLSDIAGEVTNDMVLQNIFQHFCIGK 461


>gi|329955507|ref|ZP_08296415.1| tRNA modification GTPase TrmE [Bacteroides clarus YIT 12056]
 gi|328525910|gb|EGF52934.1| tRNA modification GTPase TrmE [Bacteroides clarus YIT 12056]
          Length = 461

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 143/465 (30%), Positives = 236/465 (50%), Gaps = 29/465 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-----KKKKPFPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP   ++   I       KK    +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGCIRVSGPEAIEITSRIFIPAATNKKLENGKPYTLTFGRI 57

Query: 56  LDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            DG  I+D+ L+ +F +P S+TGE+S E   HG   ++  +L+ L K    R+A PGE++
Sbjct: 58  YDGPEIIDEVLVSLFRAPHSYTGENSTEITCHGSAYILQKVLQLLIKS-GCRMATPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL+M  M G  S       D+L H  S IE 
Sbjct: 117 QRAFLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTALRDQLLHFTSLIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ E+++     E+      ++  I+  ++   +G  I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSDHEELELADRSELCQLANNIEKVIARLVNSFSVGNAIKNGVPVAIVGETNAGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIV+DI GTTRD++   +++ G   +  DTAGIRET+D +E  GI+RTF 
Sbjct: 237 LLNVLLNEEKAIVSDIHGTTRDIIEDTVNIGGITFRFIDTAGIRETNDTIESIGIERTFQ 296

Query: 295 EVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-- 343
           +++ A+++L + +    +          +   +    I +  K+DL         +    
Sbjct: 297 KLDQAEIVLWIIDATDAQTQITQLAGQLLPRCERKQLILVYNKADLVDNIQNSIPNDFPD 356

Query: 344 -------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                  S+   E +EEL   + +            I ++ RH   L+  +  +      
Sbjct: 357 NVKSIILSAKNREHIEELQQMLITSAHLPTVTQNDVIVTNVRHYEALNNALESIHRVQKG 416

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +   D +++++R     L  I G V  + +L  IF  FCIGK
Sbjct: 417 LANNISGDFVSQDIRECIFHLSDIAGEVTNDMILQNIFQHFCIGK 461


>gi|148251782|ref|YP_001236367.1| tRNA modification GTPase TrmE [Bradyrhizobium sp. BTAi1]
 gi|205829150|sp|A5E8G7|MNME_BRASB RecName: Full=tRNA modification GTPase mnmE
 gi|146403955|gb|ABQ32461.1| tRNA modification GTPase trmE [Bradyrhizobium sp. BTAi1]
          Length = 445

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 178/448 (39%), Positives = 258/448 (57%), Gaps = 11/448 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA+S+G  PSAI+I+RLSG       + +   K P PR A+        G  
Sbjct: 1   MHPHDQTIFALSSGRPPSAIAIVRLSGVGAGPALQTLTG-KLPPPRLATRALLRDDRGDP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ FP P S TGED AE HVHG  AV+  ++  L+ MP +R A+ GEF+RRAFEN
Sbjct: 60  IDDAVVLWFPGPASATGEDVAELHVHGSRAVITTLVSLLSAMPQMRAADRGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL EAE L DLI ++T+ QRR ++  + G L      W D++    + IEA +DF++
Sbjct: 120 GKIDLTEAEGLDDLIHADTDRQRRQALRQLKGLLGDKARSWRDQIIQAAALIEAGIDFAD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV        L  I  L  +I   ++     E +R+G  +VI G  NAGKS+L N LA
Sbjct: 180 EGDVPAELIAPALAWIRQLLAEIEEVLAAQGRAERLRDGLTVVIAGPPNAGKSTLMNQLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRD++ + LDL+GY V + DTAGIR+TDD VE+EG++R       AD
Sbjct: 240 RREVAIVSPHAGTTRDLIEVALDLDGYPVTVIDTAGIRQTDDPVEQEGVRRARDRAAQAD 299

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLISSFTGEGLE 352
           L+L L E + + E+    +    F+  K DL         S   E     IS+ +G G+ 
Sbjct: 300 LVLWLTE-DDQAELERQTDGPIWFVRNKIDLMITEQSGAISVSPESPVFAISARSGAGMS 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
           +L+  +     + F      + + +R    LS+T   L   S+   D G ++ AE LR+A
Sbjct: 359 DLLEALVGFARDYFGATEHGLITRERQRTWLSETAAALRR-SIAAVDLGEELAAEELRIA 417

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++LG++ G VDVE LLD+IF +FCIGK
Sbjct: 418 ALALGRLLGRVDVEDLLDVIFREFCIGK 445


>gi|145590262|ref|YP_001156859.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|205415793|sp|A4T0N1|MNME_POLSQ RecName: Full=tRNA modification GTPase mnmE
 gi|145048668|gb|ABP35295.1| tRNA modification GTPase trmE [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 457

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/460 (34%), Positives = 250/460 (54%), Gaps = 23/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   K  I AV+T    + + ++R+SG    ++ E +  +    PR+A+L  F   D + 
Sbjct: 1   MMTRKVPIIAVATAPGKAGVGVVRISGQGLGELVETLFHRSL-APRQATLLTFCDADNQP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEFSRRA 117
           +D+ L I F  P SFTGED  E   HGG  ++  +++      K   L +A PGEF+ RA
Sbjct: 60  IDQLLAIYFVGPASFTGEDVLELQCHGGPQLLELVMKRCLELGKALGLVIAEPGEFTLRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           + N K+DL +AE++ADLI +++E   R +   + G  S      I+++T +R  +E+ LD
Sbjct: 120 YLNNKVDLAQAEAIADLIDAQSEAAVRGAARSLQGSFSEDINGLIEEITQLRILVESTLD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E E+++   + +    +  +K  + +  +  K G+I+R+G ++V+ G  N GKSSL N
Sbjct: 180 FPE-EEIEFLENAQARERLAAVKKKLEALQAGAKQGKILRDGIQLVLAGAPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            LA ++VAIVT I GTTRD +   + +EG  + I DTAG+R+T D VE +GI+RT+  + 
Sbjct: 239 RLAGEEVAIVTPIAGTTRDRVKESIQIEGVPMHIIDTAGLRKTVDEVEAKGIERTWEAIR 298

Query: 298 NADLILLLKEINS-------KKEI--SFPKNIDFIFIGTKSDLY------STYTEEYDHL 342
            ADL++ L   N+       ++EI  + P     + +  KSDL       S+  E    L
Sbjct: 299 LADLVIFLGAPNAEPGHESLREEILGALPAKCPILDVINKSDLIEGGLAVSSSNEASPLL 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDC 400
           IS+ TG G++ L  KI  ++         +I S +RHL  L +   ++  +       + 
Sbjct: 359 ISAKTGAGIDALKQKILHVV-GWNGAQEGAIVSRRRHLDCLERAAEHIAKSEQFAANGNN 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L++ AE L LA   LG+ITG +  + LL  IFS+FCIGK
Sbjct: 418 SLELFAEELFLAQNHLGQITGKLLPDDLLGKIFSQFCIGK 457


>gi|86141545|ref|ZP_01060091.1| tRNA modification GTPase [Leeuwenhoekiella blandensis MED217]
 gi|85832104|gb|EAQ50559.1| tRNA modification GTPase [Leeuwenhoekiella blandensis MED217]
          Length = 471

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 153/470 (32%), Positives = 241/470 (51%), Gaps = 36/470 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDG-R 59
           ++TI A++T     AI++IR+SG     +   + K    KK       +L     +DG R
Sbjct: 4   QDTIAALATAPGAGAIAVIRVSGAEALAIVSDLFKAKSGKKLIDQDSHTLHLGNIVDGSR 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ILD+ L+ +F    S+TGE + E   HG   +   IL+ L +    R A  GEF+ RAF 
Sbjct: 64  ILDEALVSIFKGKRSYTGEPTVEISCHGSSYIQQEILQLLFR-NGCRAAKAGEFTLRAFI 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S+     +++M+ M G  S+   Q   +L +  S IE +LDF+
Sbjct: 123 NGKMDLSQAEAVADLIASDNAGAHQIAMQQMRGGFSNEIAQLRQELLNFASLIELELDFA 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV+  + +E  N I  +   +   I     G +I+NG  + I+G  N GKS+L NAL
Sbjct: 183 E-EDVEFANREEFQNLITKITRVLKRLIDSFATGNVIKNGIPVAIVGEPNVGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DI GTTRD +  ++ + G   +  DTAGIRET D++E  GIK+TF ++  A
Sbjct: 242 LNEERAIVSDIAGTTRDTIEDEISIGGIGFRFIDTAGIRETVDVIEGLGIKKTFEKIAQA 301

Query: 300 DLILLLKEINSKK--------EISFPKNI----DFIFIGTKSD----------------L 331
            ++L L      K        EI   +N       + +  K D                L
Sbjct: 302 QVVLYLINSEKFKDQAELFTVEIQKIRNRFPDKPLVLVANKIDHLSETEQESINKQLAAL 361

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            S   +    LIS+ TG G+E L  ++   ++    +   ++ ++ RH   L + +  +E
Sbjct: 362 LSEGNKSAVLLISAKTGTGVEALKEQLLQFVNTGALRNNETLVTNSRHYDALLKALEEIE 421

Query: 392 MASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +  +     D++A ++R A    G+ITG V  ++LL  IF+ FCIGK
Sbjct: 422 KVQMGIDAGLSGDLLAIDIREALYHFGEITGQVTNDELLGNIFANFCIGK 471


>gi|288956852|ref|YP_003447193.1| tRNA modification GTPase [Azospirillum sp. B510]
 gi|288909160|dbj|BAI70649.1| tRNA modification GTPase [Azospirillum sp. B510]
          Length = 443

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 182/444 (40%), Positives = 263/444 (59%), Gaps = 15/444 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDKGL 65
           TI+A++T    S ++++R+SGP        +  +  P PR+A L       DG  LD  L
Sbjct: 5   TIYALATAPGRSGVAVVRISGPEAGSALAALTGRPLPLPRRAVLATLRDPRDGDALDDAL 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +P SFTGED  E H+HGG AVV G++E LA +P LRLA PGEF+RRAFENGK+DL
Sbjct: 65  VLRFTAPASFTGEDVVELHLHGGRAVVTGVVEALATLPGLRLAEPGEFTRRAFENGKLDL 124

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE++ADLI +ET  QRR ++  M G L  LY  W ++LT   + IEAD+DF+E ED+ 
Sbjct: 125 TEAEAVADLIDAETTAQRRQALRQMEGALGRLYDGWRERLTRALAHIEADIDFAE-EDLP 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              ++ V   +  L  +I++H+  G  GE +R G  I I+G  NAGKSSL NALA++D A
Sbjct: 184 GGVAEAVRPVLAGLAGEIAAHLDDGGRGERLREGLHIAIVGAPNAGKSSLLNALARRDAA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILL 304
           IV+   GTTRD++ + LDL GY V ++DTAG+R    D VE+EGI+R       AD+ + 
Sbjct: 244 IVSARAGTTRDIIEVHLDLGGYPVVLADTAGLREAAADEVEEEGIRRARDRAARADVKIA 303

Query: 305 LKEINSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHLI---SSFTGEGLEELINK 357
           + +  +  ++        + D + +  K+DL +      D      S+ TG GL+ L   
Sbjct: 304 VFDATTLPDLDPATLDLIDGDTVVVFNKTDLAAAGDLRPDLSPILLSAHTGAGLKRLEET 363

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAENLRLASVSL 416
           +++  +++         +  RH   L++    L  A     D  L ++ AE++RLAS +L
Sbjct: 364 LRAFSADRLAIGSAPSLTRARHRAALTECRESLSRAL----DAPLPELAAEDVRLASRAL 419

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G+ITG VDVE LLD+IF  FCIGK
Sbjct: 420 GRITGRVDVEDLLDVIFRDFCIGK 443


>gi|90194070|gb|ABD92596.1| ThdF [Gallibacterium anatis]
          Length = 436

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 147/439 (33%), Positives = 241/439 (54%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   QV + +   K   PR A+   F  +DG +LD+G+ + F +P
Sbjct: 1   TPPGRGGVGILRVSGPLSEQVAKEVLG-KTLKPRFANYLPFKDIDGSVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ + ++  +RLA PGEFS +AF N KIDL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDLLLKRILQIKGIRLARPGEFSEQAFLNDKIDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D+L ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDASSEQAARSALKSLQGEFSTKVHQLVDELIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   ++   SQ K G ++R G K+VI G  NAGKSSL NAL+ +D AIVTD+ G
Sbjct: 179 EAHLNQIIAKVAEVQSQAKQGSLLREGMKVVIAGRPNAGKSSLLNALSGRDAAIVTDVAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + L+G  + I DTAG+R   D VE+ GI+R + E++ AD +L + +  +  
Sbjct: 239 TTRDVLREHIHLDGMPLHIIDTAGLRTATDEVERIGIERAWQEIDQADRVLFMLDSTTTD 298

Query: 313 EI-----------SFPKNIDFIFIGTKSDLYSTYTEEY------DHLISSFTGEGLEELI 355
           E              P +I    I  K+D+ S               +S+ T +G++ L 
Sbjct: 299 ETLPEKIWPEFMSRLPPSIPVTIIRNKADISSETEGIRTENGYTTITLSAKTQQGIQLLK 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASV 414
             +K  +  +         + +RHL  L Q  ++L+   +        +++AE L++A  
Sbjct: 359 AHLKESIGYQTVT-EGGFLARRRHLEALEQAAQHLQQGHIQLTQFYAGELLAEELKMAQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|153811977|ref|ZP_01964645.1| hypothetical protein RUMOBE_02370 [Ruminococcus obeum ATCC 29174]
 gi|149831876|gb|EDM86962.1| hypothetical protein RUMOBE_02370 [Ruminococcus obeum ATCC 29174]
          Length = 486

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 148/456 (32%), Positives = 232/456 (50%), Gaps = 24/456 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-----KASLRYFFGLDGR-I 60
           TI A+ST    S I I+R+SG +   V   I + K            ++ Y F  DG  +
Sbjct: 33  TIAAISTAMSASGIGIVRISGENAMDVIAKIYRSKNGKKDIRTVVSHTIHYGFIYDGEEV 92

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+++   P ++TGED+ E   HGG+  +  +LE + K     +A PGEF++RAF N
Sbjct: 93  VDEVLVMIMRGPHTYTGEDTVEIDCHGGVYAMKRVLETVLK-NGAVIAEPGEFTKRAFLN 151

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ D+I ++  M  + S+E + G +     +   +L H  ++IE  LD  E
Sbjct: 152 GRLDLSQAEAVMDVIQAKNSMALKSSVEQLKGSVQRAVKEIRARLLHQIAYIETALDDPE 211

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D+ ++  +         +N IS  +     G +I+ G K VILG  NAGKSSL N L 
Sbjct: 212 HFDLTDYPQELQKIVEKESEN-ISELLKTADDGRMIQEGIKTVILGKPNAGKSSLLNFLV 270

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVT+I GTTRD+L   + L G  +++ DTAGIRET+D+VEK G+ +     ENAD
Sbjct: 271 GEDRAIVTEIAGTTRDILEEYISLNGITLRVIDTAGIRETEDVVEKIGVGKAKQMAENAD 330

Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISSF 346
           LIL + +       N ++ +        I I  K+DL +    E            +S  
Sbjct: 331 LILYVVDSSLPLDDNDREIMELLSGRKSIVIYNKTDLEAAVDIEELKEKTGSPVIPVSVV 390

Query: 347 TGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDI 404
              G+ +L ++IK +  +           ++ RH   L ++   L++           D 
Sbjct: 391 EETGISQLEDEIKRMFFHGELSFNDEVYITNARHKAALEESKESLKLVMDSIAMGMSEDF 450

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +L  A  SLG+I G    E L++ IFSKFC+GK
Sbjct: 451 FSIDLMNAYESLGRIVGESVGEDLVNEIFSKFCVGK 486


>gi|294673439|ref|YP_003574055.1| tRNA modification GTPase TrmE [Prevotella ruminicola 23]
 gi|294472346|gb|ADE81735.1| tRNA modification GTPase TrmE [Prevotella ruminicola 23]
          Length = 448

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 143/447 (31%), Positives = 234/447 (52%), Gaps = 14/447 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKG 64
           +TI A++T     AI I+R+SG    ++   +  K     +  ++ Y    +G  I+D+ 
Sbjct: 4   DTICALATAPG-GAIGIVRISGNETLEILSRVFTKDLTNAQPNTIHYGHIRNGEEIVDEV 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+ VF +P S+TGE+SAE   HG   ++N +L  L      R A PGEF++RA+ NGK+D
Sbjct: 63  LVSVFRAPHSYTGEESAEISCHGSRYILNKVL-ALLIANGCRQAGPGEFTQRAYLNGKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI+S  +   +++M  + G  SS   Q  ++L  + S +E +LDFS+ ED+
Sbjct: 122 LSQAEAVADLIASTNQATHQIAMSQLRGHFSSKLAQLREQLLKLTSLLELELDFSDHEDL 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +     E+++    + N I+      + G+ ++ G  + I+G +N GKS+L N L K D 
Sbjct: 182 EFADRSELMDLTKTIDNHITRLAKSFETGQALKQGIPVAIVGKTNVGKSTLLNRLLKDDR 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+D+ GTTRD +   +D+ G   +  DTAGIR+T D VE+ GI RT+  ++ A ++L 
Sbjct: 242 AIVSDVHGTTRDTIEDTIDINGITFRFIDTAGIRQTQDEVEQIGITRTYAAIDKARIVLW 301

Query: 305 LKEINSKKE-----ISFPKNIDFIFIGTKSDLYS----TYTEEYDHLISSFTGEGLEELI 355
           L +     E     +   +N   I I  K+D                IS+  G G+EEL 
Sbjct: 302 LIDAEPSTEEINDILQHTENKKLIVIKNKADKADNNSYNLLNYPFITISAKFGTGIEELE 361

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASV 414
             I    +         I ++ RH   L +    ++      +     D+++E+LR A  
Sbjct: 362 QAIYEAANIPALTENDIIVTNARHYDALVRAHDNIQRVIDGLQMQLSGDLLSEDLRQALD 421

Query: 415 SLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           +L +IT G +   ++L  IF  FC+GK
Sbjct: 422 TLAEITGGQITPNEVLGNIFKNFCVGK 448


>gi|302880137|ref|YP_003848701.1| tRNA modification GTPase TrmE [Gallionella capsiferriformans ES-2]
 gi|302582926|gb|ADL56937.1| tRNA modification GTPase TrmE [Gallionella capsiferriformans ES-2]
          Length = 442

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 149/434 (34%), Positives = 236/434 (54%), Gaps = 14/434 (3%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPES 74
                + ++R+SG     + E I  +  P  R A+   F    G ++D+G+ + FP+P S
Sbjct: 15  QGRGGVGVVRISGSGLGSIAEAILGR-LPVARHATYTDFKDETGEVIDQGIALYFPAPHS 73

Query: 75  FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134
           +TGED  E   HGG AV++ +L+    +  +RLA  GEF+RRAF N KIDL +AES+ADL
Sbjct: 74  YTGEDVLELQGHGGAAVLHLLLQRCLGL-GVRLAEAGEFTRRAFLNDKIDLAQAESVADL 132

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           I + T    R +M  + G+ S+     +++LT +R  +EA LDF E ED++   +     
Sbjct: 133 IEATTTEAARSAMRSLHGDFSAAINGLVEELTLLRMLVEAMLDFPE-EDIEVVDTSHRDR 191

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +  +K  ++  ++  K G ++R G  I ++G  N GKSSL N LA ++VA+V+D+PGTT
Sbjct: 192 LLEKIKTKLAQTLATAKQGSLLREGAHIALVGRPNVGKSSLLNRLAGEEVALVSDVPGTT 251

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SK 311
           RDV+   + + G  + I DTAG+RE+ D VE  G+ RT   V  ADLIL+L +     S+
Sbjct: 252 RDVIRQAIQIRGVPLHIMDTAGLRESGDEVENMGMARTHQTVGRADLILMLLDAAQGCSE 311

Query: 312 KEISFPKNIDFIF----IGTKSDLYS-TYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            +++             +  K+DL     + +    IS+ +G G++ L  +I   +    
Sbjct: 312 GDLAIIAGFPVEIPRLQVYNKADLLQGALSNDAGIYISAKSGLGIDTLREQILKQIGWHN 371

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
           ++   +  + +RHL  L+Q   +L+ A         ++ AE LRL   +L  ITG    +
Sbjct: 372 QE-GGTFIARERHLIALNQANIHLQQAEQLLDH--PELFAEELRLTQQALSSITGKFSAD 428

Query: 427 QLLDIIFSKFCIGK 440
            LL  IFS+FCIGK
Sbjct: 429 DLLGEIFSRFCIGK 442


>gi|255283806|ref|ZP_05348361.1| tRNA modification GTPase TrmE [Bryantella formatexigens DSM 14469]
 gi|255265689|gb|EET58894.1| tRNA modification GTPase TrmE [Bryantella formatexigens DSM 14469]
          Length = 459

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 150/461 (32%), Positives = 234/461 (50%), Gaps = 23/461 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGL 56
           M    +TI A+STG   S I I+R+SG   F V + + + K           +++Y F  
Sbjct: 1   MFMNTDTIAAISTGMTSSGIGIVRISGTDAFAVADRMYRAKSGKRLSDMPSHTIQYGFIA 60

Query: 57  DG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           DG  I+D+ L+++  +P SFT ED+ E + HGG+  +  ILE LA     RLA PGEF++
Sbjct: 61  DGSEIIDEVLVMLMRAPRSFTAEDTVEINCHGGVYAMKRILE-LAVKSGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I ++ E   + S+  + G +  +     +K+ +  +FIE+ 
Sbjct: 120 RAFLNGRIDLSQAEAVIDVIQAKNEYALKSSVSQLKGSVLKVIRALREKIIYEVAFIESA 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LD  E   +  +  +     I  +K ++   I+  + G+ IR G + VI+G  NAGKSSL
Sbjct: 180 LDDPEHISLDEYPERLQ-EQIRPMKEELEKLIASAENGKRIREGIRTVIVGKPNAGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  ++ AIVT+I GTTRD L  ++ + G  ++I DTAGIR+T D VEK G+++    
Sbjct: 239 LNVLLGEERAIVTEIAGTTRDTLEEEIQIHGVSLQIIDTAGIRDTQDTVEKIGVEKALAY 298

Query: 296 VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD--------H 341
            E+ADLIL + +       N  + +   +    I +  K DL    +EE           
Sbjct: 299 AEDADLILYVADAATGLDENDIRIMDKIREKKVIVLLNKMDLEVVTSEEQIREILNKPVI 358

Query: 342 LISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKD 399
            +S+    G++ L N IK +    K         ++ R    L   +  L          
Sbjct: 359 PVSAKEESGIDILENTIKEMFYEGKISFNDEVYITNMRQKAALEAALESLCRVEESIAMQ 418

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D  + +L  A   LG ITG    E L++ IF +FC+GK
Sbjct: 419 MPEDFFSIDLMSAYEELGNITGESVGEDLINEIFGRFCMGK 459


>gi|154483917|ref|ZP_02026365.1| hypothetical protein EUBVEN_01623 [Eubacterium ventriosum ATCC
           27560]
 gi|149735408|gb|EDM51294.1| hypothetical protein EUBVEN_01623 [Eubacterium ventriosum ATCC
           27560]
          Length = 459

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 149/458 (32%), Positives = 234/458 (51%), Gaps = 26/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-----SLRYFFGLDG-R 59
           +TI A+S+ A  S I IIR+SG    +V + I +      + A     ++ Y   +DG +
Sbjct: 5   DTIAAISSAAGNSGIGIIRVSGDEAIEVVDKIFRPANKNKKLANVESHTVHYGHIMDGDK 64

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+ L+IV  +P S+TGED+ E   HGG+ ++  +L+ L      R A PGEF++RAF 
Sbjct: 65  TLDQVLVIVMKNPHSYTGEDTVEIDCHGGMLILKKVLD-LVLKNGARTAEPGEFTKRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI+S+ +     S+E + G +S         + +  +FIE+ LD  
Sbjct: 124 NGRIDLSQAEAVMDLINSKNDFALNSSIEQLKGGVSDAIKDIRKDIIYHIAFIESALDDP 183

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +  +  +E+   +    N IS  ++    G I++ G K VILG  NAGKSSL N +
Sbjct: 184 EHISLDGYD-EEITEMLNENINKISKLVNSFDNGRIMKEGIKTVILGKPNAGKSSLLNLM 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIVTDI GTTRD L  +++  G  +KI DTAGIR+T+D+VE+ G+ +     +  
Sbjct: 243 LGEDRAIVTDIEGTTRDTLEENINFNGLSLKIIDTAGIRDTEDLVERIGVNKAKEIAKEG 302

Query: 300 DLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
           DLI+ + +               IN K+ I      D   +    DL      +     S
Sbjct: 303 DLIIYVVDGSRELDDNDREIIKLINDKQAIILVNKSDMDTVINIDDLKKDSNRDVIL-FS 361

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
              GEG+++L  +I+++    K         ++ RH   L   +  L+    + +     
Sbjct: 362 VKNGEGMDQLEEEIRNMFYSGKVTYNDQVYITNARHKEALENALESLKQVKNSVDAGMPE 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  + +L  A   LG I G    + L++ IFSKFC+GK
Sbjct: 422 DFYSIDLMDAYTDLGLIIGESVEDDLVNEIFSKFCMGK 459


>gi|160941470|ref|ZP_02088805.1| hypothetical protein CLOBOL_06361 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435616|gb|EDP13383.1| hypothetical protein CLOBOL_06361 [Clostridium bolteae ATCC
           BAA-613]
          Length = 459

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 145/458 (31%), Positives = 239/458 (52%), Gaps = 25/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------PFPRKASLRYFFGLDG- 58
           +TI A++TG   S I I+R+SG   F V + I + +K         +  ++ Y +  DG 
Sbjct: 4   DTIAAIATGMSNSGIGIVRISGEQAFSVIDSIFRNRKGERVRLSLSQSHTVHYGYIYDGD 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+I+   P S+T ED+ E   HGG+ +V  ILE +      R A PGEF++RAF
Sbjct: 64  EKVDEALVIIMKGPHSYTAEDTVEIDCHGGVLMVRRILETVL-HAGARTAEPGEFTKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++AD+I +  E   + S+  +SG +S+   +   ++ +  +FIE+ LD 
Sbjct: 123 LNGRLDLSQAEAVADVIHATNEYALKSSVSQLSGSVSAKIKELRSRILYQIAFIESALDD 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E   +  + S+ + +D++ +  ++   +     G ++  G K VILG  NAGKSSL N 
Sbjct: 183 PEHISLDGYGSRLM-DDLVPMIGEVRKLLLSADDGRVMSEGVKTVILGKPNAGKSSLMNV 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVT+I GTTRD L   + L+G  + + DTAGIR+T+D+VEK G+ R      +
Sbjct: 242 LLGEERAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDVVEKIGVDRAMKAARD 301

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLIS 344
           ADLI+ + +       + ++ I F ++   I +  KSDL                   +S
Sbjct: 302 ADLIIYVVDGSRPLDESDREIIEFIRDRKTIVLLNKSDLDLEVGTAELEQICGHKVLPVS 361

Query: 345 SFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
           +   +G+E L  +IK +  +           ++ RH   L Q +  L M   + E     
Sbjct: 362 AKEEQGIELLEQEIKKLFYHGDLSFNDQVYITNARHKEALEQCLESLLMVKGSVEDSMPE 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  + +L  A   LG I G    + +++ IF+KFC+GK
Sbjct: 422 DFYSIDLMNAYEQLGFIIGEAVDDDVVNEIFAKFCMGK 459


>gi|312876169|ref|ZP_07736156.1| tRNA modification GTPase TrmE [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796984|gb|EFR13326.1| tRNA modification GTPase TrmE [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 455

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 162/457 (35%), Positives = 248/457 (54%), Gaps = 23/457 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------PFPRKASLRYFFGLD 57
           E +TI A+ST      I I+RLSG   F + E + + +K         R A+L   +  D
Sbjct: 2   EFDTIAAISTPIGTGGIGIVRLSGKDAFDIAEKLIRSRKYKSIKDIPARYAALVDVYDGD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +LI F SP S+TGED  E   HGG+ V+  ILE   K    R A PGEF++RA
Sbjct: 62  -EFVDEAILIKFKSPHSYTGEDIVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+S+T + ++ + + + G LS    +    L ++ + IEA +D
Sbjct: 120 FLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNLVASIEASID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE E V      E+L+ +      I+  +   + G+ I++G   VI+G  N GKSSL N
Sbjct: 180 FSEHE-VDEVPHTEILSTVDAALQKINKLLKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K++ AIVTDIPGTTRDV+   LD+EG  + ++DTAG+R+T+D+VEK G+K+T   +E
Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAGVRKTEDVVEKIGVKKTLESIE 298

Query: 298 NADLILLLKEINSKKEISFP-----KNIDFIFIGTKSDLYSTYTEE-------YDHLISS 345
            ADL+L + E +   +         K+  FI +  K D     + E        + +  S
Sbjct: 299 RADLVLFMIESSGILQEDLEIFETIKDKRFIVLVNKIDKEVKVSHEDIKRIFGKEGIFIS 358

Query: 346 FTGEGLEELINKIK--SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
              +   EL+ K     +L    +     + ++ RH   L +  ++L  A  N     LD
Sbjct: 359 VEHDKNLELVEKAITNEVLDKDIEAFDSVLITNLRHKELLLKAKKFLLSAKENLDCVPLD 418

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I++ +++ A  SL +ITG    E ++D IFS FCIGK
Sbjct: 419 ILSIDIKNALESLYQITGKNVTEDMVDRIFSMFCIGK 455


>gi|317051763|ref|YP_004112879.1| tRNA modification GTPase TrmE [Desulfurispirillum indicum S5]
 gi|316946847|gb|ADU66323.1| tRNA modification GTPase TrmE [Desulfurispirillum indicum S5]
          Length = 458

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 150/458 (32%), Positives = 247/458 (53%), Gaps = 25/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------PFPRKASLRYFFGLDG 58
           +ETI AV+T     A+ I+R+SGP+   + +   + +       P PR      F    G
Sbjct: 4   QETITAVATAPGEGAVGIVRVSGPAAPTLFQQFFRSRNLQPVQQPKPRHLYFGLFLDEGG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             LD+ L +  P P SFTGED  EFH HGG  +++ ILE  +     RLA PGEFSRRAF
Sbjct: 64  HPLDQVLAVHMPGPHSFTGEDVVEFHCHGGSTIISRILELCSTR--CRLAQPGEFSRRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ D+I S+T    R++ + M G L     +   +L  I+  +EA ++F
Sbjct: 122 LNGKLDLTQAEAIIDVIRSKTPEAARIASDVMQGRLRDTLQELRGELIAIQGNLEATMEF 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+ ED+   S+  +   +  ++  + + ++  + G ++R+G  + I+G  N GKSSL NA
Sbjct: 182 SD-EDIAPASTTALAQRLTGVRQQLETLLAHSRTGMLMRDGAAVAIVGKPNVGKSSLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L++ + +IVT IPGTTRD++   + + G  +++ DTAGIR++ D VE+ GI+RT   ++ 
Sbjct: 241 LSRSERSIVTAIPGTTRDIVEQYISVHGLPIRLLDTAGIRQSQDAVEQIGIERTRSAIQQ 300

Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--------S 344
           AD+IL L + +   +          +    + +  KSDL     E   H +        S
Sbjct: 301 ADIILWLLDTSRPADEEDHEIARLVQGKPCLVLLNKSDLPRAMDESILHAMDHDTILTTS 360

Query: 345 SFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGL 402
             TG+GLE+L++ + + +     +     + S  R    ++  +  L  A     +  G 
Sbjct: 361 LQTGDGLEKLMDTLFRKLSGAHHESHSNPLLSRARQRESMANALESLGHAQDTLIRGLGY 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++++ +++ A   LG+I G V  + +LD IFS+FCIGK
Sbjct: 421 ELVSMDIQHAFSYLGEILGEVVTDDILDTIFSEFCIGK 458


>gi|157826422|ref|YP_001495486.1| tRNA modification GTPase TrmE [Rickettsia bellii OSU 85-389]
 gi|166234815|sp|A8GUF3|MNME_RICB8 RecName: Full=tRNA modification GTPase mnmE
 gi|157801726|gb|ABV78449.1| tRNA modification GTPase TrmE [Rickettsia bellii OSU 85-389]
          Length = 445

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/448 (35%), Positives = 249/448 (55%), Gaps = 17/448 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64
           ETIFA S+    + +++ R+SG    +V + +  K    PR    +     +   ++D  
Sbjct: 2   ETIFAQSSSFGKAGVAVFRVSGTKSLEVLKLLTGKSNFKPRFMYYQKLTSPESNDLIDNA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F +P SFTGED  E H HG  A+   +   L  +P +RLA  GEF++RAF N K D
Sbjct: 62  MVVYFKAPNSFTGEDVVEIHTHGSKAISIMLTNALLNIPGVRLAEAGEFTKRAFLNNKFD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE +ADLI++ET MQ + ++    G L  LY  W  +L  I S +EA +DF + ED+
Sbjct: 122 LTAAEGIADLINAETIMQHKQAIRQAGGALEELYNSWRSQLLRIISLLEAYIDFPD-EDI 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                K+V N    L N IS +++  + GE++R+G K+ I+G  NAGKSSL N L ++D+
Sbjct: 181 PESVLKDVTNTHKTLINTISEYLNDNRKGELLRSGLKLAIIGPPNAGKSSLLNFLMRRDI 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIV++I GTTRD++   LD+ GY + + DTAGIR E++D++E+EGIKR     + AD+ +
Sbjct: 241 AIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRGESNDVIEQEGIKRAIDSAKKADIKI 300

Query: 304 LLKEINS-----KKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---SSFTGEGLE 352
           ++ +  +      ++I+   + + I I  K DL      +  E  +     S      L 
Sbjct: 301 VMFDAETLDSAVNEDITGLIDENTIVIINKIDLIPENRIFNIENKYRCLKVSIKNNIALP 360

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            ++  I+ I  N          +++RH +HL Q + YL+  +L   D  L +  E++R+ 
Sbjct: 361 SILKNIEEIAENMAGFTETPYITNERHRHHLKQALVYLKDFNL---DNDLVLATEDIRMT 417

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +G ITG +DVE++L  IF  FCIGK
Sbjct: 418 MHRIGAITGIIDVEEILGEIFKNFCIGK 445


>gi|91204852|ref|YP_537207.1| tRNA modification GTPase TrmE [Rickettsia bellii RML369-C]
 gi|122426138|sp|Q1RKJ6|MNME_RICBR RecName: Full=tRNA modification GTPase mnmE
 gi|91068396|gb|ABE04118.1| tRNA modification GTPase TrmE [Rickettsia bellii RML369-C]
          Length = 445

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/448 (35%), Positives = 249/448 (55%), Gaps = 17/448 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64
           ETIFA S+    + +++ R+SG    +V + +  K    PR    +     +   ++D  
Sbjct: 2   ETIFAQSSSFGKAGVAVFRVSGTKSLEVLKLLTGKSNFKPRFMYYQKLTSPESNDLIDNA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F +P SFTGED  E H HG  A+   +   L  +P +RLA  GEF++RAF N K D
Sbjct: 62  MVVYFKAPNSFTGEDVVEIHTHGSKAISIMLTNALLNIPGVRLAEAGEFTKRAFLNNKFD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE +ADLI++ET MQ + ++    G L  LY  W  +L  I S +EA +DF + ED+
Sbjct: 122 LTAAEGIADLINAETIMQHKQAIRQAGGALEELYNSWRSQLLRIISLLEAYIDFPD-EDI 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                K+V N    L N IS +++  + GE++R+G K+ I+G  NAGKSSL N L ++D+
Sbjct: 181 PESVLKDVTNTHKTLINTISEYLNDNRKGELLRSGLKLAIIGPPNAGKSSLLNFLMRRDI 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIV++I GTTRD++   LD+ GY + + DTAGIR E++D++E+EGIKR     + AD+ +
Sbjct: 241 AIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRGESNDVIEQEGIKRAIDSAKKADIKI 300

Query: 304 LLKEINS-----KKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---SSFTGEGLE 352
           ++ +  +      ++I+   + + I I  K DL      +  E  +     S      L 
Sbjct: 301 VMFDAETLDSAVNEDITGLIDENTIVIINKIDLIPENRIFNIENKYRCLKVSIKNNIALP 360

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            ++  I+ I  N          +++RH +HL Q + YL+  +L   D  L +  E++R+ 
Sbjct: 361 SILKNIEEIAENMAGFTETPYITNERHRHHLKQALVYLKDFNL---DNDLVLATEDIRMT 417

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +G ITG +DVE++L  IF  FCIGK
Sbjct: 418 MRRIGAITGIIDVEEILGEIFKNFCIGK 445


>gi|332531204|ref|ZP_08407117.1| tRNA modification GTPase TrmE [Hylemonella gracilis ATCC 19624]
 gi|332039311|gb|EGI75724.1| tRNA modification GTPase TrmE [Hylemonella gracilis ATCC 19624]
          Length = 452

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 162/454 (35%), Positives = 240/454 (52%), Gaps = 17/454 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    E I A++T     A+ I+R SG     +   +C K    PR A+        G  
Sbjct: 2   LARHHEPIVAIATAPGRGAVGIVRASGRDLTTLVHAVCGKAL-MPRHATYLPLRDARGEA 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM-PNLRLANPGEFSRRAFE 119
           +D GL I FP+P S+TGE+  E  VHGG  V+  +L    +  P  R+A PGEF++RAF 
Sbjct: 61  IDHGLAIHFPAPHSYTGEEVLELQVHGGPVVLQLLLARCLEALPGSRIALPGEFTQRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI + TE   R +   + G  S    Q  + L H+R  +EA LDF 
Sbjct: 121 NGKLDLAQAEAVADLIDASTEAAARSAGRSLEGAFSREIAQLREALVHLRMLVEATLDFP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED+      +    +  L+  +   + Q + G ++R G K+VI G  NAGKSSL NAL
Sbjct: 181 E-EDIDFLRQADAQGQLSRLQVQLQVILRQAQQGSLLREGIKVVIAGQPNAGKSSLLNAL 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A  ++AIVT I GTTRDV+   + +EG  + + DTAG+RE+ D VE+ GI+R + ++ +A
Sbjct: 240 AGAELAIVTPIAGTTRDVVQQTIQIEGVPLHVVDTAGLRESQDEVERIGIERAWAQIASA 299

Query: 300 DLILLLKEI-----------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           D +L L ++           +       P ++  I I  K D            +S+ TG
Sbjct: 300 DAVLFLHDLTRQIQADYLASDEALAQRLPSDVPVIHIWNKHDQAPEAVNRPGISLSAKTG 359

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIA 406
            GL+ L   +   +  +         + +RH+  L    R+L+ A   L+EK   LD++A
Sbjct: 360 AGLDLLRQALLRTVGWQ-SAPEGLFLARERHVQALRSVSRHLQAAECHLDEKALALDLLA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E LRLA  +L +ITG    + LL +IFS+FCIGK
Sbjct: 419 EELRLAQNALNEITGEFTSDDLLGVIFSRFCIGK 452


>gi|119605004|gb|EAW84598.1| GTP binding protein 3 (mitochondrial), isoform CRA_b [Homo sapiens]
          Length = 497

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 172/466 (36%), Positives = 253/466 (54%), Gaps = 35/466 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH-----IRSFIEADLDFS 179
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT        + +EA +DF 
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKASPPFALAHVEAYIDFG 214

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+++++    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L
Sbjct: 215 EDDNLEEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLL 274

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           ++K V+IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R    +E A
Sbjct: 275 SRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQA 334

Query: 300 DLILLLKEINSKKEISFPK-----------------NIDFIFIGTKSDLYSTYTEEYDHL 342
           DLIL + + +     S                    +   + +  KSDL S         
Sbjct: 335 DLILAMLDASDLASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPD 394

Query: 343 I------SSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMAS 394
           +      S  TGEGL+ L+  ++  L+           + +  RH +HL   +  L    
Sbjct: 395 LPPHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK 454

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +   L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 455 ---QSKDLALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 497


>gi|254414160|ref|ZP_05027927.1| tRNA modification GTPase TrmE [Microcoleus chthonoplastes PCC 7420]
 gi|196178835|gb|EDX73832.1| tRNA modification GTPase TrmE [Microcoleus chthonoplastes PCC 7420]
          Length = 460

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/458 (33%), Positives = 239/458 (52%), Gaps = 25/458 (5%)

Query: 4   EKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----- 56
           + ETI A++T       ++ I+R+SG +  ++   +         + + R  +G      
Sbjct: 7   QGETIAAIATAVVPQQGSVGIVRVSGENALEIARQLFHAPGRQLWQ-THRILYGYVRHPQ 65

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +I+D+ LL++  SP S+T ED  EFH HGGI  V  +L+   ++   RLA PGEF+ R
Sbjct: 66  TQQIVDEALLLIMQSPRSYTREDVVEFHCHGGIMPVQQVLQLCLEL-GARLAQPGEFTLR 124

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AES+ADL+ S +    + ++ G+ G+L+    Q         + IEA +
Sbjct: 125 AFLNGRLDLTQAESIADLVGSRSPAAAQAALAGIQGKLAVPIRQLRATCLDSLAEIEARI 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF E  D+       ++  +  +  +I   ++    G+++R G  I I+G  N GKSSL 
Sbjct: 185 DFEE--DLPPLDEAGIIAQLQQVLTNIKQILATADRGQLLRTGLNIAIVGRPNVGKSSLL 242

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NA ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIRET D VEK G++R+    
Sbjct: 243 NAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETVDQVEKIGVERSRRAA 302

Query: 297 ENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST----YTEEYDHLISSF 346
           E ADLI+L+ E       + ++  +  K+   I +  K+DL       Y +  D +I++ 
Sbjct: 303 EAADLIVLVIEATAGWSSDDQEIYTQVKHRPLILVINKTDLAPADSVSYPDSIDRVITAA 362

Query: 347 --TGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGL 402
               EG+E L   I   +           +  ++R    L+Q    LE       +   L
Sbjct: 363 VTKNEGIEALEQGILEAVQTGTLHAADLDLAINQRQAAALTQAKIALEQVQETIAQQLPL 422

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 423 DFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 460


>gi|254494883|ref|ZP_01052239.2| tRNA modification GTPase, ThdF family [Polaribacter sp. MED152]
 gi|213690465|gb|EAQ41667.2| tRNA modification GTPase, ThdF family [Polaribacter sp. MED152]
          Length = 467

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 149/462 (32%), Positives = 239/462 (51%), Gaps = 27/462 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGL---D 57
           + +TI A++T +   AIS+IRLSG     + +   K   K K    + +     G    +
Sbjct: 8   KNDTIIALATPSGVGAISVIRLSGDKAITIADSFFKSIKKDKKLTDQKTHTIHLGHIVNN 67

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ILD+ L+ VF +P S+TGE+  E   HG   +   I++ L      R+A+ GEF+ RA
Sbjct: 68  GLILDEVLVSVFKNPNSYTGENVVEISCHGSTYIQQEIIQ-LFLKNGCRMADNGEFTMRA 126

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL +AE++AD+I+S +E    ++++ M G +S+   +   +L    + IE +LD
Sbjct: 127 FLNGKMDLSQAEAVADVIASNSEASHVMAIQQMRGGISNELKELRGQLLDFAALIELELD 186

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FS  EDV+     +    +  + + +   I     G  ++NG  + I+G  N GKS+L N
Sbjct: 187 FS-GEDVEFADRTKFKELVAKITHVLKRLIDSFSFGNAMKNGIPVAIIGEPNVGKSTLLN 245

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  ++ AIV+DI GTTRD +  +L +EG   +  DTAGIR+T+DIVE  GIK+ + + E
Sbjct: 246 ALLNEERAIVSDIAGTTRDAIEDELIIEGVAFRFIDTAGIRKTEDIVENIGIKKAYEKAE 305

Query: 298 NADLILLLKEINSK------KEISFPK----NIDFIFIGTKSDLYSTYTEEYDHLI---- 343
           NA LI+ L +  S+       EI   +    N   + +  K DL  T   E         
Sbjct: 306 NAQLIIFLIDAKSENKENRLAEIEAIQQRFPNKKLLVVANKIDLIPTEELEQLKSNIDNL 365

Query: 344 ---SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKD 399
              S+    G++EL  ++ S+++        +I ++ RH   L+  +  +       + +
Sbjct: 366 MPLSAKNNVGIDELKQELTSLVNIGALSNNETIVTNSRHFEALNNALIAISSVQKGIDLE 425

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVE-QLLDIIFSKFCIGK 440
              D+ + ++R     LG ITG  DV+  +L  IFS FCIGK
Sbjct: 426 ISTDLFSIDIRECLRHLGAITGDYDVDKDILGHIFSNFCIGK 467


>gi|319780612|ref|YP_004140088.1| small GTP-binding protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166500|gb|ADV10038.1| small GTP-binding protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 443

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 201/441 (45%), Positives = 285/441 (64%), Gaps = 8/441 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ++I A+S+G LP+ +++IR+SGP    V E I        R A+LR F   DG +LD GL
Sbjct: 5   DSIVALSSGRLPAGVAVIRISGPQTRFVVETIAGTMVKD-RAAALRRFRASDGTLLDTGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED AEFHVHGG AVV  +LE +     +R A PGEF+RRAF NGK+DL
Sbjct: 64  VVFFPGPASFTGEDVAEFHVHGGRAVVAKMLETMTGFDGVRHAEPGEFTRRAFLNGKVDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E+LADL+++ETE QRR +++   G  S LY  W  +L H R+ IEA++DF++EEDV 
Sbjct: 124 VETEALADLVNAETEAQRRFAVQNADGVQSELYLGWRRRLIHARAMIEAEIDFADEEDVP 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  V +D+  + ++I  HI+  +  EIIR+G+++VILG  NAGKSSLFNALA++D A
Sbjct: 184 GSVSDAVWSDVRTMIDEIDRHIAGFRAAEIIRDGFEVVILGAPNAGKSSLFNALARRDAA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTD PGTTRD+L + LDL+G  V+++DTAG+R+    VE  GI++   +   ADL+LLL
Sbjct: 244 IVTDEPGTTRDLLEVTLDLQGLRVRLTDTAGLRDAPGKVEAIGIEKARAKAHGADLLLLL 303

Query: 306 KEINSKKEI-SFPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFTGEGLEELINKIK 359
            ++   +++   P     + +GTK DL         T +YD +IS   G G+EEL+ +I 
Sbjct: 304 HDMAKPRDVGELPTVAPTLLVGTKLDLIDGRAVPDATADYDLVISVEEGTGVEELLAEIG 363

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
              S     +   +PS  RH+  L +T R+L  A+    +   ++ AE LRLA+  LG+I
Sbjct: 364 RRASESAGSVGDVLPSRLRHVELLGETNRHLHRATDGRMNEQ-ELRAEELRLAADRLGRI 422

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
            G +DVE +LD+IFS+FCIGK
Sbjct: 423 VGAIDVEDMLDVIFSQFCIGK 443


>gi|302388592|ref|YP_003824414.1| tRNA modification GTPase TrmE [Clostridium saccharolyticum WM1]
 gi|302199220|gb|ADL06791.1| tRNA modification GTPase TrmE [Clostridium saccharolyticum WM1]
          Length = 459

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 146/457 (31%), Positives = 236/457 (51%), Gaps = 25/457 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK------KKKPFPRKASLRYFFGLDG-R 59
           TI A++T    S I I+R+SG   FQ+ + I K      KK       ++ Y    DG  
Sbjct: 5   TIAAIATAMSSSGIGIVRISGEESFQIIDRIFKAKGNGEKKLSLEPSHTIHYGCIYDGDE 64

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L+++   P S+T ED+ E   HGG+ V   ILE + K    R A PGEF++RAF 
Sbjct: 65  IIDEVLVLIMKGPRSYTAEDTVEIDCHGGVLVTKRILETVLK-YGARPAEPGEFTKRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++ D+I ++     + S+  + G +S       +K+ +  +FIE+ LD  
Sbjct: 124 NGRVDLSQAEAVIDVIHAKNNYALKSSVSQLEGAVSRKIKDMREKIIYQIAFIESALDDP 183

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +  +  + +L  +  +K +++  I     G ++  G + VILG  NAGKSSL N L
Sbjct: 184 EHISLDGY-QELLLKTLEPIKEELNLLIKSSDNGRVLSEGIETVILGKPNAGKSSLLNVL 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTDI GTTRD L   + LE   + I DTAGIR+T D+VEK G+++     + A
Sbjct: 243 VGEERAIVTDIAGTTRDTLKEQIRLEDLSLNIIDTAGIRDTQDVVEKIGVEKARSAAQEA 302

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISS 345
           DLI+ + +       N ++ ++F ++   + +  K+DL    TE+            IS+
Sbjct: 303 DLIIYVVDGSCPLDENDEEILTFIESRKAVVLLNKTDLIPVVTEDMLKMRTRHQVIPISA 362

Query: 346 FTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
               G+  L N+IK++  +           ++ RH   L + ++ L M   +   +   D
Sbjct: 363 KERLGIGNLENEIKAMFYHGEIDFNDQVYITNVRHKNALLEALKSLSMVEQSVRNEMPED 422

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + +L  A   LG I G    + L++ IF KFC+GK
Sbjct: 423 FYSIDLMDAYEQLGTILGESVEDDLVNEIFRKFCMGK 459


>gi|83942027|ref|ZP_00954489.1| tRNA modification GTPase [Sulfitobacter sp. EE-36]
 gi|83847847|gb|EAP85722.1| tRNA modification GTPase [Sulfitobacter sp. EE-36]
          Length = 428

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 174/437 (39%), Positives = 253/437 (57%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA +T    + + +IR+SGP  F + E I +   P PR A++R     DG+++D+ L
Sbjct: 2   DTIFAQATAQGRAGVCVIRISGPQAFFIAETIAQP-LPAPRVAAVRAISDADGQVIDRAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED+ E H+HG IAVV  +L  L+     RL+ PGEF+RRA ENGK+DL
Sbjct: 61  VLTFEGPNSFTGEDTVELHLHGSIAVVRAVLALLSGFDGTRLSEPGEFTRRAMENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E L DLI +ETE QR+ ++  +SG L      W +KL    + +E  +DF++ EDV 
Sbjct: 121 TQVEGLGDLIEAETEAQRKQALRVLSGHLGQKVDIWREKLIRAAALLEVTIDFAD-EDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV   +  +  DI + I+     E IR G+++ I+G  NAGKS+L NALA +D A
Sbjct: 180 VDVSPEVTELLNAVNADILAEIAGTHTAERIRTGFEVAIIGRPNAGKSTLLNALAGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + + GTTRDV+ + +DL G  V + DTAG+RE  D VE  GI R     E ADL + L
Sbjct: 240 ITSAVAGTTRDVIEVRMDLGGLPVTLLDTAGLREGADEVEAIGIDRAKTRGEQADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E    +++      D I +  K+DL  +     D+ IS  TG+G+ +LI +I++IL   
Sbjct: 300 SE--EGEDLPVAATADDIVLRPKADLRDS----ADNAISGVTGQGVPQLIERIQAIL--G 351

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCV 423
            + L   + +H+RH   L ++   L  A L         DI +E LR +  +L  + G +
Sbjct: 352 ARSLNAGLATHERHRVALQKSAEGLAAAMLVLDHGPDQYDIASEELRHSIRALEALVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LLD+IFS FC+GK
Sbjct: 412 DVENLLDVIFSSFCLGK 428


>gi|238926048|ref|YP_002939566.1| tRNA modification GTPase TrmE [Eubacterium rectale ATCC 33656]
 gi|238877725|gb|ACR77432.1| tRNA modification GTPase TrmE [Eubacterium rectale ATCC 33656]
          Length = 458

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 153/459 (33%), Positives = 237/459 (51%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-----RKASLRYFFGLDG 58
           + +TI A++T   PS I IIR+SG     V + I K K         +  ++ Y F  DG
Sbjct: 2   QNDTIAAIATAMSPSGIGIIRISGDDALSVIDRIYKSKNNKKKISACQSHTIHYGFIYDG 61

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ ++++  +P ++T ED+ E   HGG+ V+  +LE + K    R A PGEF++RA
Sbjct: 62  DEKIDEVMVLLMKAPNTYTREDTVEIDCHGGVYVMKRVLEAVIK-NGARPAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D+I+S+ +   + S+  + G +     Q  ++L H  +FIE+ LD
Sbjct: 121 FLNGRIDLSQAESVIDVINSKNDFALKSSLSQLGGAVLGSIRQIREQLLHEIAFIESALD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             E   +  +  K           +I   +     G I++ G   VI+G  NAGKSSL N
Sbjct: 181 DPEHISLDGYPQKLRAIVDNEYM-EIDGLLKTSDNGRILKEGINTVIIGKPNAGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L   D AIVTDI GTTRDVL   +++ G  + + DTAGIR T+D+VEK G+K+      
Sbjct: 240 VLVGTDRAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDVVEKIGVKKAMEHAN 299

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYT--------EEYDHLI 343
            ADLI+ + +       N    I+F K+   + +  KSDL S  +        ++    +
Sbjct: 300 GADLIIYVVDSSVALDDNDYDIINFIKDKKAVILLNKSDLASKVSADDIKKLVDKTVISV 359

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S+    G++EL + IK +  +        I  ++ RH   LS     L++  +  + D  
Sbjct: 360 SAKESSGIDELSDTIKEMFFDGEVSFNDEIYITNIRHKKLLSDAKESLKLVMNSIDDDMP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  + +L  A  SLG I G    + L+D IFSKFC+GK
Sbjct: 420 EDFYSIDLMSAYESLGLIIGESVEDDLMDEIFSKFCMGK 458


>gi|47217399|emb|CAG00759.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 470

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 174/470 (37%), Positives = 257/470 (54%), Gaps = 38/470 (8%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDG-RILDKG 64
           IFA+S+G     ++++R SGP+       +         PR A LR         +LD+G
Sbjct: 2   IFALSSGHGRCGVAVVRASGPASSTALRRLAGLTHTLVPPRTALLRSITDPSSREVLDRG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+  FP+P SFTGEDS EFH+HGG AV+  +L+ L  +P +R A  GEF+RRAF+ GK+ 
Sbjct: 62  LVFWFPAPHSFTGEDSVEFHIHGGPAVIAAVLQALGNVPGMRPAEAGEFTRRAFQAGKMG 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E L DLI +ETE QRR ++  MSGEL  LY  W  +L    + +EA +DFSE+E +
Sbjct: 122 LTEVEGLGDLIHAETEAQRRQALRQMSGELGRLYQSWSQRLKRCLAHVEAFIDFSEDELI 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           ++      +      + ++  H++  + GE +R+G ++VI G +NAGKSSL N L ++  
Sbjct: 182 EDGVLNRGMCAHACSQGEVEQHLTDERRGERLRSGVQVVIAGATNAGKSSLLNTLCQRPA 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+ I GTTRDV+   LD+ G+ V +SDTAG+R++ D+VE+EG++R    +E ADL L+
Sbjct: 242 AIVSPIAGTTRDVVETPLDIGGFPVLLSDTAGLRDSLDLVEREGVRRARERLEQADLTLV 301

Query: 305 LKE----INSKKEIS---------------FPKNIDFIFIGTKSDLYSTYTEE------- 338
           + +     + + E +                P+    + +  K+DL      +       
Sbjct: 302 VVDCALLPSHQPEAAGFLKRHLRSVLSLQEHPERGRVLLVLNKTDLLPHPERQNLARELA 361

Query: 339 ------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYL 390
                    LIS  TGEGL++ +  + S + N         P  +  RH  HL Q    L
Sbjct: 362 RASGLPPVCLISCHTGEGLQDFLAALHSSVRNLCADPLAGAPSLTQARHRAHLQQCCAAL 421

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                + +D  L + AE +RLA  SLG+ITG V  E++LDIIF  FCIGK
Sbjct: 422 AQYQ-SYRDVDLALAAEGVRLALTSLGRITGRVGAEEILDIIFKDFCIGK 470


>gi|163755505|ref|ZP_02162624.1| tRNA modification GTPase [Kordia algicida OT-1]
 gi|161324418|gb|EDP95748.1| tRNA modification GTPase [Kordia algicida OT-1]
          Length = 464

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 148/463 (31%), Positives = 250/463 (53%), Gaps = 29/463 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL---DGR 59
            +TI A++T +   AIS+IR+SG     +CE + K  + K   ++ S     G    + R
Sbjct: 4   NDTIVALATPSGAGAISVIRVSGKDAITICEPLFKSVRNKNLSKQKSHTIHLGHIVDNDR 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+ L+ +F  P S+TGE++ E   HG + +   I  +L      R AN GEF+ R+F 
Sbjct: 64  YLDEVLVSLFKGPNSYTGENTIEISCHGSVYIQQQI-IQLLLRNGCRNANAGEFTLRSFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S++E   +L+M+ M G  S+      ++L +  S IE +LDF+
Sbjct: 123 NGKLDLSQAEAVADLIASDSEASHQLAMQQMRGGFSNEIKNLREELLNFASLIELELDFA 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV+     +    +  ++  +   I    +G +I+NG  + I+G  N GKS+L NAL
Sbjct: 183 E-EDVEFADRTQFKTLVKRIQFVLKRLIDSFAVGNVIKNGIPVAIVGEPNVGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DI GTTRD +  +L ++G   +  DTAGIRET D+VE  GI++TF ++E A
Sbjct: 242 LNEERAIVSDIAGTTRDTIEDELVIDGISFRFIDTAGIRETKDVVESIGIQKTFEKIEQA 301

Query: 300 DLILLLKEIN-----------SKKEISFPKN----IDFIFIGTKSD------LYSTYTEE 338
            +++ L + +             +EI   +N       + +  K D      + +T+  +
Sbjct: 302 QVVIYLFDASLLSNDQEKSKVMLQEIHKLQNKFPQKPIVIVSNKIDKGDATFIKNTFEFD 361

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
              L+S+    G+++L  K+ S ++    +   +I ++ RH   L + +  ++      E
Sbjct: 362 NLLLLSAKENIGVDDLKEKLVSFVNTGALRNNETIITNTRHYDALLKALEEIDKVHYGLE 421

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +D++A ++R A    G+ITG +  + LL  IF+ FCIGK
Sbjct: 422 SGLSVDLMAIDIRQALYHFGEITGEITSDDLLGNIFANFCIGK 464


>gi|323143419|ref|ZP_08078104.1| tRNA modification GTPase TrmE [Succinatimonas hippei YIT 12066]
 gi|322416824|gb|EFY07473.1| tRNA modification GTPase TrmE [Succinatimonas hippei YIT 12066]
          Length = 456

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 243/458 (53%), Gaps = 27/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A++T      I+IIR+SG     V + +C    P  RKA  R F+     I+D+G
Sbjct: 4   EDTIAAIATAPGRGGIAIIRVSGSKALDVAKNVCH-IIPEARKAYFRKFYD-GQSIVDEG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +L+ FP P S+TGED+ E   HGG      +L  + K+  +R A PGEF+RRAF NGK+D
Sbjct: 62  VLLYFPGPNSYTGEDTVELQGHGGNVAPQRVLSSVLKIAGVRQAEPGEFTRRAFLNGKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE++ DLIS+ +E   + ++  + GE ++      DKLT  R  +E  LDF E E  
Sbjct: 122 LTAAEAVEDLISAGSESAAKAALSSLEGEFAAKLNTLTDKLTTFRMRLEGCLDFPE-EHE 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             F S +  +D+  L       ++  K G  +  G +IV+ G  NAGKSSL NALA ++ 
Sbjct: 181 DFFDSGKAADDLHDLIAIADESLTTAKQGVKLNEGARIVLAGSPNAGKSSLLNALAGEER 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLIL 303
           AIVT+IPGTTRD+L+I++++ G  V I+DTAGIR+T  D +E  GIKR    ++ ADL+L
Sbjct: 241 AIVTNIPGTTRDILSINIEIGGIPVTITDTAGIRDTPSDEIEAIGIKRAIEMLKKADLVL 300

Query: 304 LLKEINSKKEIS----------FPKNIDFIFIGTKSDLYST-----------YTEEYDHL 342
           L+ + +S    +          F  N + + I +KSDL              +++     
Sbjct: 301 LMVDASSPAPEAEHTLKRLKEIFGDNTNLLLIKSKSDLPENKETAKLLNNPDFSQYKQIS 360

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
            S+    GL+ L  ++K  L            + +RH+  + +T+  L  +        L
Sbjct: 361 SSTKNPTGLDNLRAELKKAL--GEIPAEGVFSARRRHVNAIKETIDALHRSIEMLDLGDL 418

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + A  + +A   LG ITG V  + +L  IFS FCIGK
Sbjct: 419 VLCAREIAIAQDHLGTITGKVTSDDILGKIFSTFCIGK 456


>gi|114705491|ref|ZP_01438394.1| tRNA modification GTPase [Fulvimarina pelagi HTCC2506]
 gi|114538337|gb|EAU41458.1| tRNA modification GTPase [Fulvimarina pelagi HTCC2506]
          Length = 474

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 200/475 (42%), Positives = 276/475 (58%), Gaps = 40/475 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A+S+GALPS ++++R+SG     V         P  R+ASLR F   DG  +D 
Sbjct: 2   HSDTIAALSSGALPSGVAVVRVSGAKA-NVAMTSLAGAMPPARQASLRTFRSADGVPIDT 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F  P + TGED AEFH+HGG AVV+  L+ +  + ++RLA  GEF+RRAFENG+I
Sbjct: 61  GIALFFDGPNTVTGEDIAEFHLHGGRAVVSAFLQAVTHIADIRLAEAGEFTRRAFENGRI 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL EAE LADL+++ETE QRR + +   G LS++Y  W+ +LT  R+ IEA  DF++E+D
Sbjct: 121 DLTEAEGLADLLAAETEGQRRAAFDQARGALSTVYEGWMKRLTQARAMIEAGFDFADEDD 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V   +   V   +  + +DI +H+ +   GEI+R+GYK+ I+G  NAGKSSL NALA+++
Sbjct: 181 VGENAGAGVRQAVSEICDDIRAHLQKASRGEILRSGYKVAIVGAPNAGKSSLLNALAERE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTD+PGTTRDV+++ LDL G  V + DTAGIRET D VE  G+ RT   +  A+L+L
Sbjct: 241 AAIVTDVPGTTRDVISVTLDLSGVPVVLLDTAGIRETKDKVEAIGVGRTRAAMNEANLVL 300

Query: 304 LLKEI-NSKKEISFPKN---------------------------IDFIFIGTKSDLYSTY 335
            L++  ++   +S  K                             D + + TK DL S  
Sbjct: 301 ALEDPRDAPGPLSRLKGLLSYVKPSLGPVGQALDDEESEEETLERDVLTVRTKVDLASGQ 360

Query: 336 TEE----------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
            +           YD  IS+ TG G+ EL+  I             S+P   R    L  
Sbjct: 361 KDPGHGKHLEEGGYDFAISAKTGAGISELMEAISERARTAAGDPASSVPLRVRQRQLLED 420

Query: 386 TVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           TVR LE   LN++D   +I AE LR AS  LG +TG V VE LLD+IFS+FCIGK
Sbjct: 421 TVRILEEF-LNDRDAPDEIAAETLRRASTRLGALTGAVGVEDLLDVIFSEFCIGK 474


>gi|115522411|ref|YP_779322.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris BisA53]
 gi|115516358|gb|ABJ04342.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris BisA53]
          Length = 482

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 167/457 (36%), Positives = 254/457 (55%), Gaps = 21/457 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA+S+G  PSAI+I+R+SG    ++ E +  +  P PR A        DG  
Sbjct: 30  MHASDQTIFALSSGRPPSAIAIVRVSGSRGAKIVEALAGR-LPTPRMAMRALIKDRDGEP 88

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ FP P S TGED AEFH+HGG AV+  ++  L+   N+R A PGEF+RRAFE+
Sbjct: 89  IDDAVVLWFPGPASATGEDVAEFHIHGGRAVLAALMATLSSFENVRAAEPGEFTRRAFEH 148

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL EAE L DLI ++T+ QRR ++  ++G L      W  ++   ++ IEA +DF++
Sbjct: 149 GKIDLTEAEGLDDLIHADTDRQRRQALRQLNGLLGDRARDWRAQIIEAQALIEAGIDFAD 208

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV +      L  I  L  +I + ++     E +R+G  + I+G  N GKS+L N LA
Sbjct: 209 EGDVPDDLLAPALAKIEALAGEIEALLAAQGRSERLRDGLVVAIVGPPNVGKSTLMNQLA 268

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRDV+ + LDL+GY V + DTAGIR++DD VE+EG++R       AD
Sbjct: 269 RREVAIVSPHAGTTRDVIEVHLDLDGYPVTVIDTAGIRDSDDPVEQEGVRRAQARAAEAD 328

Query: 301 LILLLK-EINSKKEISFPKNIDFIFIGTKSDLYSTYT----------------EEYDHLI 343
           L+L L  +       +   +     +  K DL    T                 +    I
Sbjct: 329 LVLWLLADDQVAAPAAIESDAPVWLVRNKVDLAGAATGVKPAKNLEANLGQNVPQPSFAI 388

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
           S+  G+G+ +L+  +    +  F        + +RH   L   +  L+ +     +   +
Sbjct: 389 SAKRGDGIADLVGALGGFAAEFFGAGEAGAITRQRHRDLLRDALVMLQCSKRGRAE---E 445

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+LR AS SLG++ G VDVE +LD +F  FCIGK
Sbjct: 446 LVAEDLRSASRSLGRLLGQVDVEDVLDALFRDFCIGK 482


>gi|291526551|emb|CBK92138.1| tRNA modification GTPase trmE [Eubacterium rectale DSM 17629]
          Length = 458

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 151/459 (32%), Positives = 237/459 (51%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-----RKASLRYFFGLDG 58
           + +TI A++T   PS I IIR+SG     V + I K K         +  ++ Y F  DG
Sbjct: 2   QNDTIAAIATAMSPSGIGIIRISGDDALSVIDRIYKSKNNKKKISACQSHTIHYGFIYDG 61

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ ++++  +P ++T ED+ E   HGG+ V+  +LE + K    R A PGEF++RA
Sbjct: 62  DEKIDEVMVLLMKAPNTYTREDTVEIDCHGGVYVMKRVLEAVIK-NGARPAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D+I+S+ +   + S+  + G +     Q  ++L H  +FIE+ LD
Sbjct: 121 FLNGRIDLSQAESVIDVINSKNDFALKSSLSQLGGAVLGSIRQIREQLLHEIAFIESALD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             E   +  +  K           +I   +     G I++ G   VI+G  NAGKSSL N
Sbjct: 181 DPEHISLDGYPQKLRAIVDNEYV-EIDGLLKTSDNGRILKEGINTVIIGKPNAGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L   + AIVTDI GTTRDVL   +++ G  + + DTAGIR T+D+VEK G+K+     +
Sbjct: 240 VLVGSERAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDVVEKIGVKKAMEHAD 299

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYT--------EEYDHLI 343
            ADLI+ + +       N    I+F K+   + +  KSDL S  +        ++    +
Sbjct: 300 EADLIIYVVDSSVVLDDNDYDIINFIKDKKAVILLNKSDLASKVSADDIKKLVDKTVISV 359

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S+    G++ L + IK +  +        I  ++ RH   LS     L++  +  + D  
Sbjct: 360 SAKESSGIDGLSDTIKEMFFDGQVSFNDEIYITNIRHKKLLSDAKESLKLVMNSIDDDMP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  + +L  A  SLG I G    + L+D IFSKFC+GK
Sbjct: 420 EDFYSIDLMSAYESLGLIIGESVEDDLMDEIFSKFCMGK 458


>gi|170750474|ref|YP_001756734.1| tRNA modification GTPase TrmE [Methylobacterium radiotolerans JCM
           2831]
 gi|205415796|sp|B1M0E0|MNME_METRJ RecName: Full=tRNA modification GTPase mnmE
 gi|170656996|gb|ACB26051.1| tRNA modification GTPase TrmE [Methylobacterium radiotolerans JCM
           2831]
          Length = 441

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 168/443 (37%), Positives = 263/443 (59%), Gaps = 8/443 (1%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRIL 61
           +E +T+FA ++G   +A+++IR+SGP+   V   +   + P PR+ SLR      DG  L
Sbjct: 2   NETDTLFAPASGFGRAAVAVIRISGPAAGGVLATL-GGRLPTPRRLSLRSLRDPRDGTEL 60

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+  FP P++++GED AE H+HGG AV   +L  LA++P  R A PG F+RRA  NG
Sbjct: 61  DRALVAWFPGPDTYSGEDMAELHLHGGAAVRMRVLATLARLPGCRAAEPGAFTRRAVLNG 120

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL EAE++ADLI +ETE QRR ++  + G LS     W  +     +  EA LDF++E
Sbjct: 121 RMDLAEAEAVADLIDAETEGQRRQALRQLDGALSRQVAAWRAEAIDCLAAAEAALDFADE 180

Query: 182 EDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            DV +      L D    L++ +++ +  G  GE +R G+ +V+ G  N+GKS+L NAL+
Sbjct: 181 GDVDDAGLDAALFDRAARLRDAVAATLRDGHRGERLREGFTVVLAGAPNSGKSTLLNALS 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++DVAIV+D PGTTRD + + LDL G  V + DTAG+RET + +E +GI RT   ++ AD
Sbjct: 241 RRDVAIVSDSPGTTRDAIEVRLDLGGLPVLLVDTAGLRETAEPIEAQGIVRTRARIDTAD 300

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHLISSFTGEGLEELINK 357
           L++ L           P     + + TK+DL++      +  D  +S+ TG G+++L++ 
Sbjct: 301 LVVALVPPGGAVPDLGPGCRPILIVRTKADLFAGSQPAGDSADVTVSAHTGAGMDDLLDA 360

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           I++   +       ++ +  RH   L   V +L+  S +      ++ AE+LRLA  +LG
Sbjct: 361 IQAAAEDGLGTGD-ALITRARHRAALEACVAHLDRVSGSAGGLP-ELAAEDLRLAVRALG 418

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           ++ G V VE +LD +FS FCIGK
Sbjct: 419 EVAGHVGVEDVLDRLFSGFCIGK 441


>gi|323694902|ref|ZP_08109052.1| tRNA modification GTPase TrmE [Clostridium symbiosum WAL-14673]
 gi|323500992|gb|EGB16904.1| tRNA modification GTPase TrmE [Clostridium symbiosum WAL-14673]
          Length = 462

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 150/459 (32%), Positives = 241/459 (52%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-----KKKPFPRKASLRYFFGLDG 58
             +TI A++T    S I IIR+SG   F + + I +     KK    +  ++ Y    DG
Sbjct: 6   TSDTIAAIATALTNSGIGIIRVSGNEAFDIVDRIFRPKNKRKKLKEEKTYTVHYGHIQDG 65

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ L IV   P S+T ED+ E   HGG+ V+  ILE + K    R+A PGEF++RA
Sbjct: 66  DEIIDEVLAIVMRGPHSYTAEDTVEIDCHGGVLVMKKILETVIK-YGARMAEPGEFTKRA 124

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+S+     + S+  +SG +S    +  +KL    +FIE+ LD
Sbjct: 125 FLNGRIDLSQAEAVIDVINSKNNYALKSSVSQLSGSMSKKVKELREKLLFEIAFIESALD 184

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             E   +  +  +++   +  ++ +++  IS    G ++  G + VILG  NAGKSSL N
Sbjct: 185 DPEHISLDGYP-EKLKVTVNDMQEELNRAISTFDSGRVLSEGIRTVILGKPNAGKSSLMN 243

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ AIVTDI GTTRD L  ++ L G  + I DTAGIRET+D+VEK G+ +     +
Sbjct: 244 VLVGEERAIVTDIAGTTRDTLEENIRLHGISLNIVDTAGIRETEDVVEKIGVDKARANAD 303

Query: 298 NADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-------- 343
           +ADL++ + + +   +      ++  +    I +  K+DL    T E             
Sbjct: 304 DADLLIYVVDGSCPLDENDYQIMNLIEGRKSIVLLNKTDLEMVLTPEEIKEKTGKEVVAV 363

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S+    G++ L  KIK + LS +       + ++ RH   +S+ ++ L +     E    
Sbjct: 364 SAKEQRGIDLLEEKIKELFLSGEIDFNDEVMITNVRHKTAMSEALKSLSLVKQSIEDQMP 423

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  + +L  A   LG I G    + L++ IF+KFC+GK
Sbjct: 424 EDFYSIDLMNAYEQLGTIIGESLEDDLVNEIFNKFCMGK 462


>gi|162448238|ref|YP_001621370.1| tRNA modification GTPase TrmE [Acholeplasma laidlawii PG-8A]
 gi|189036193|sp|A9NE34|MNME_ACHLI RecName: Full=tRNA modification GTPase mnmE
 gi|161986345|gb|ABX81994.1| tRNA modification GTPase [Acholeplasma laidlawii PG-8A]
          Length = 448

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 151/448 (33%), Positives = 243/448 (54%), Gaps = 12/448 (2%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLDGRI 60
           + +TI A++T    + IS+IR+SG         I K K   K         +    DG I
Sbjct: 2   QFQTIAAIATPLGTAGISVIRVSGDEAISKVNQIFKGKNLNKVKSHTIHYGHILNEDGSI 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ ++ VF +P+SFT ED  E   HGGI +   +LE + +   + LA PGEFS+RAF N
Sbjct: 62  LDEVMISVFIAPKSFTKEDVVEISTHGGILITQKVLERILET-GIELAQPGEFSKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL++AE++ D+I +  E   +++ + ++   SS+      K+  + + IE ++D+ E
Sbjct: 121 GRIDLVQAEAIMDIIHATNENAIKVANKALNKATSSMIDNLKSKVLTLIAQIEVNIDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +D    S + +   +  L ++I+  +++ K  + IR G K VI+G  N GKSSL NAL 
Sbjct: 181 YDDAIIMSKELIYPRVNDLLDEINDILTKSKRTQYIREGVKTVIVGRPNVGKSSLLNALL 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV+DI GTTRD +   ++L+G  +++ DTAGIR+  D +EK G+ R+   +  A+
Sbjct: 241 NEERAIVSDIAGTTRDTIDAFVNLDGVTLQLIDTAGIRDALDTIEKIGVDRSRKAIHEAE 300

Query: 301 LILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           L+LL+ +++ K        ++  ++ + I IG K DL S    + +  IS+   EGL  L
Sbjct: 301 LVLLVLDLSQKLTKEDEMLLTLTEHKNRIIIGNKKDLPSYLEIDTNVQISTLEKEGLSVL 360

Query: 355 INKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAENLRLA 412
            ++I   L  +      F+  S+ RH+  L +    LE        D  +DI A +L  A
Sbjct: 361 ESEILKTLKLDNLVDKDFNYLSNVRHIQKLKEAKTSLESVINAIHHDMPVDIYAVDLTTA 420

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LG+I G      LL  +FSKFC+GK
Sbjct: 421 WNRLGEILGNHQYGDLLTELFSKFCLGK 448


>gi|90194138|gb|ABD92630.1| ThdF [Pasteurella multocida subsp. septica]
          Length = 433

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 150/436 (34%), Positives = 232/436 (53%), Gaps = 21/436 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      I I+R+SGP   +V   +   K P PR A    F   DG +LD+G+ + F +P
Sbjct: 1   TAPGRGGIGILRVSGPKAVEVAHAVLG-KCPKPRMADYLPFKDSDGSVLDQGIALYFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  V++ +L+ + ++  LRLA PGEFS +AF N K+DL +AE++A
Sbjct: 60  HSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   +    S+ K G I+R G K+VI G  NAGKSSL NALA ++ AIVTDI G
Sbjct: 179 EAHLNDIITQLDHVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           TTRDVL   + ++G  + I DTAG+RE  D VE+ GI R + E+E AD ILL+ +     
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDSTEAD 298

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELI 355
                 + S+     P NI    +  K+DL        +         S+ T +G+  L 
Sbjct: 299 NQDLEKVRSEFLTKLPSNIPVTIVRNKADLSGEKEGIVEQHGYTVITLSAKTQQGVALLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASV 414
             +K  +  +   +     + +RHL  L Q   +L+   +        +++AE LR    
Sbjct: 359 EHLKHSMGYQ-TNMEGGFLARRRHLEALEQAATHLQQGHVQLTQFYAGELLAEELRRVQN 417

Query: 415 SLGKITGCVDVEQLLD 430
            L +ITG    + LL 
Sbjct: 418 HLSEITGQFTSDDLLG 433


>gi|86610114|ref|YP_478876.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123500914|sp|Q2JIE6|MNME_SYNJB RecName: Full=tRNA modification GTPase mnmE
 gi|86558656|gb|ABD03613.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 459

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 146/440 (33%), Positives = 233/440 (52%), Gaps = 20/440 (4%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF----GLDGRILDKGLLIVFPSPE 73
            ++ I+RLSG     + + I    +      S R  +       G+ILD+ L +   +P 
Sbjct: 23  GSVGIVRLSGSRALPIVQAIFTPARRNAVWESHRLLYGWIRDEKGQILDEALAVWMQAPR 82

Query: 74  SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133
           S+T ED AE H HGGI VV   L++  +    RLA PGEFS RAF NG+IDL +AES+AD
Sbjct: 83  SYTREDVAELHCHGGIMVVQATLQQCLR-QGARLAQPGEFSLRAFLNGRIDLTQAESVAD 141

Query: 134 LISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           L+++ +    R+++ G+ G+L         +L  + + IEA LDF E  D+         
Sbjct: 142 LVAARSPQAARMALAGLQGKLGGSIRALRQELLGLLAEIEARLDFEE--DLPPLDVAAWQ 199

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             +  ++  I + ++  + G+++R G K+ I+G  N GKSSL NA + +D AIVTD+PGT
Sbjct: 200 ARLQAIQTQIQALLATAERGQLLRTGVKVAIVGRPNVGKSSLLNAWSGQDRAIVTDLPGT 259

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           TRDV+   L ++G  V++ DTAGIR T+D VE+ G++R+    + AD+++L+ +  +   
Sbjct: 260 TRDVVESHLVVKGIPVQLLDTAGIRATEDPVERLGVERSQRLAQAADVLVLVIDAQAGWT 319

Query: 314 ISFP------KNIDFIFIGTKSDLYS----TYTEEYDHLISSFT--GEGLEELINKIKSI 361
            +        ++   I +  K+DL          E  H + +    G+G+ EL   ++ +
Sbjct: 320 AADAAIYESIRHRPLILVINKTDLAPPEGIPLPPEIAHRVPAVAAQGKGIPELEEALEQL 379

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKIT 420
           ++    +    I  ++R    L Q    LE      +    LD  + +LR A  +LG+IT
Sbjct: 380 VTQGRPQPNLEISLNQRQAAALQQAQASLEQVGQAIQAQLPLDFWSIDLRGALHALGQIT 439

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G    E +LD IFS+FCIGK
Sbjct: 440 GEEISESVLDQIFSRFCIGK 459


>gi|258543708|ref|YP_003189141.1| tRNA modification GTPase TrmE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634786|dbj|BAI00762.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637842|dbj|BAI03811.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640896|dbj|BAI06858.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643951|dbj|BAI09906.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO
           3283-22]
 gi|256647006|dbj|BAI12954.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO
           3283-26]
 gi|256650059|dbj|BAI16000.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO
           3283-32]
 gi|256653049|dbj|BAI18983.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656103|dbj|BAI22030.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO
           3283-12]
          Length = 443

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 171/446 (38%), Positives = 249/446 (55%), Gaps = 17/446 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF---GLDGR 59
             ++TIFA+STG   +AI+++R+SG     +   +C  K P  RKA LR  +    +   
Sbjct: 7   QAEDTIFALSTGIERAAIAVLRVSGAGSRDILLRVCG-KVPDARKAVLRKIWTNASVQDD 65

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ L++ FP P S+TGED  E H+H G A++  + E L      R A PGEF+RRAF 
Sbjct: 66  LLDEALVLWFPGPRSYTGEDGFELHLHAGPAIIRAVSEALV-NAGARPAEPGEFTRRAFV 124

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL+EAE +ADL+++ET+ QR+L++    G LS LY  W ++L  + +F EA +DF 
Sbjct: 125 NGRMDLVEAEGIADLVAAETDGQRKLALAQADGALSHLYSGWSERLKKLLAFQEALIDFP 184

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + ED+       +  +I  L++++  H++ G+ GE IR G    I G  NAGKSSL N L
Sbjct: 185 D-EDLPPEVEDGINQEIQKLQSEMQQHVADGEHGERIRQGVVFAITGPPNAGKSSLLNWL 243

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIV+   GTTRD L +   L G  V   DTAG+RETDD +E EG++R    V+ A
Sbjct: 244 TGRDTAIVSSKAGTTRDALEVACILAGIKVTFVDTAGLRETDDEIEAEGVRRALFHVKQA 303

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSD---LYSTYTEEYDHLISSFTGEGLEELIN 356
           D +L +   N   +  FP     I IG K+D   +  T   +    IS   G GL EL  
Sbjct: 304 DCVLQMFPANEAPDDVFP---GAILIGNKADIGKIPKTIQGKPVLAISLKKGNGLPELYA 360

Query: 357 KIKSILSN--KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
            +K  +            + +  RH   + + V+ L+ A    +    ++  E LRLA  
Sbjct: 361 FLKRKVEELTAASTSGAPLLTRARHKAGVLEAVQCLQAA---LQQDWPELRGEELRLAMR 417

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LG++TG V VE LLD IF +FCIGK
Sbjct: 418 ALGRLTGHVGVEDLLDTIFGQFCIGK 443


>gi|270293804|ref|ZP_06200006.1| tRNA modification GTPase TrmE [Bacteroides sp. D20]
 gi|270275271|gb|EFA21131.1| tRNA modification GTPase TrmE [Bacteroides sp. D20]
          Length = 464

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 147/468 (31%), Positives = 238/468 (50%), Gaps = 32/468 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-----KKKKPFPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP   ++   I       KK    +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGCIRVSGPDAIEITSRIFTPARKGKKLKDAKPYTLTFGHI 57

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            +   I+D+ L+ +F +P S+TGEDS E   HG   ++  +L+ L      RLA PGE++
Sbjct: 58  HEEENIIDEVLVSLFRAPHSYTGEDSTEIMCHGSSYILQKVLQLLI-GNGCRLAAPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF  GK+DL +AE++ADLI+S +    RL+M  M G  S       D+L H  S IE 
Sbjct: 117 QRAFLGGKMDLSQAEAVADLIASTSAATHRLAMSQMRGGFSKELASLRDQLLHFTSLIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ E+++     E+      ++  IS  +    +G  I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSDHEELEFADRSELCLLADGIEQVISRLVQSFSVGNAIKNGVPVAIIGETNAGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL  ++ AIV+DI GTTRDV+   ++L G   +  DTAGIRET+D +E  GI+RTF 
Sbjct: 237 LLNALLNEERAIVSDIHGTTRDVIEDTVNLGGITFRFIDTAGIRETNDTIENLGIERTFQ 296

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLY---------STYT 336
           ++E A+++L + +           + + +   +    I +  K+DL          S   
Sbjct: 297 KLEQAEIVLWIVDATNAVSQIPQLTTQILPRCEGKRLILVFNKTDLVQDASTIPNSSFTV 356

Query: 337 EEYDHLISSFTGEG---LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +    S + +G   L++L   + S  +         I ++ RH   L+  +  +   
Sbjct: 357 AATNVQCISISAKGRTNLDKLQQMLISAANLPTVTQNDVIVTNIRHYEALTHALEAIHRV 416

Query: 394 SLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                ++   D +++++R     L  I G V  + +L  IF  FCIGK
Sbjct: 417 QQGLAENLSGDFVSQDIRECIFHLSDIAGEVTNDMVLGNIFEHFCIGK 464


>gi|225570320|ref|ZP_03779345.1| hypothetical protein CLOHYLEM_06417 [Clostridium hylemonae DSM
           15053]
 gi|225160852|gb|EEG73471.1| hypothetical protein CLOHYLEM_06417 [Clostridium hylemonae DSM
           15053]
          Length = 478

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 153/470 (32%), Positives = 239/470 (50%), Gaps = 37/470 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDGR-I 60
           +TI A+ST    S I I+R+SG   F + + I      KK    +  ++ Y +  DG   
Sbjct: 11  QTIAAISTAMSDSGIGIVRMSGGKAFMIADRIYEGKNGKKLAAQKSHTIHYGYIKDGEET 70

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+++   P S+TGED+ E + HGG+ +V  +LE + K    R A PGEF++RAF N
Sbjct: 71  IDEVLVMLMRGPHSYTGEDTVEVNCHGGVYLVRRVLELMIK-NGARPAEPGEFTKRAFLN 129

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ DLI+S+ E   + S+  + G + S      +K+ +  +FIE  LD  E
Sbjct: 130 GRLDLSQAEAVGDLIASQNEYALKSSVSQLKGNVKSKINDIRNKIIYHTAFIETALDDPE 189

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              V  +  +E+ + +  L  +I+  +S    G II+ G K VI+G  NAGKSSL N L 
Sbjct: 190 HISVDGY-GEELRSAVNELLLEINKLLSTCDNGRIIKEGIKTVIVGRPNAGKSSLLNVLV 248

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT++ GTTRD+L   ++L+G  + I DTAGIRETDDIVEK G+ +  +  + AD
Sbjct: 249 GEERAIVTEVAGTTRDILEEHINLQGISLNIIDTAGIRETDDIVEKIGVDKAKMYADEAD 308

Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-------------- 340
           LIL + +       N ++ +        I +  K+DL    T+E                
Sbjct: 309 LILYVIDASAPLDENDRQILKMIYGKPAIILLNKTDLDMIITKEKIKDVYNASNPANNNI 368

Query: 341 --------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLE 391
                     +S+    G+ +    +K++           I  ++ RH   L      L+
Sbjct: 369 SKSKEIQVIEVSAKNQNGIADFEEAVKNMFFEGNLSFNDEIYITNVRHKAALQDAGGSLQ 428

Query: 392 MASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 +     D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 429 KVIDSIDMGMPEDFYSIDLLDAYKSLGDITGDTMGEDLINEIFSKFCMGK 478


>gi|225028844|ref|ZP_03718036.1| hypothetical protein EUBHAL_03131 [Eubacterium hallii DSM 3353]
 gi|224953840|gb|EEG35049.1| hypothetical protein EUBHAL_03131 [Eubacterium hallii DSM 3353]
          Length = 471

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/467 (33%), Positives = 242/467 (51%), Gaps = 29/467 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFG-- 55
           M +E +TI A++T    + I IIR+SG    ++   I     KK    +  + R ++G  
Sbjct: 7   MINEFDTIAAIATAVSNAGIGIIRISGSEAMEILVKIFEPYNKKADVYQLENHRIYYGNI 66

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            DG  ++D+ ++++   P S+T ED  E   HGG+ VV  +L  + K    R A PGEF+
Sbjct: 67  KDGEEVVDECIVLIMKGPHSYTKEDVVEIDCHGGVTVVYKVLNLVLK-NGARAAEPGEFT 125

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG+IDL +AE++ DLI S+ EM R+ SM  + G LS    Q  +++ +  +FIE+
Sbjct: 126 KRAFLNGRIDLSQAEAVMDLIDSKNEMARKNSMTQLKGGLSDKIKQLREEIIYQIAFIES 185

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LD  E   +  F  +++L +           +     G II  G +  I+G  NAGKSS
Sbjct: 186 ALDDPEHYSLDGFP-EKLLEEDKKWITIAKEMLDSYDNGRIIAEGIRTCIVGKPNAGKSS 244

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
             NAL  ++ AIVTDI GTTRD L   + ++G  + I DTAGIR+T+D VE  G++R   
Sbjct: 245 FLNALLGEERAIVTDIAGTTRDTLEESVTIDGITLNIVDTAGIRDTEDKVESIGVERAKK 304

Query: 295 EVENADLILLLKEIN---SKKEISF---PKNIDFIFIGTKSD------------LYSTYT 336
           E+E+ADLIL L + +   S+++I      ++   I +  KSD            L    +
Sbjct: 305 EIESADLILFLMDTSVQISEEDIEILQRIRDKKKIILLNKSDKATEESGFEQSALKEYIS 364

Query: 337 EEYDHLISSFT-GEGLEELINKIKSILSNKFKKLP-FSIPSHKRHLYHLSQTVRYLEMAS 394
           EE   +  S   G+G++  I ++K+++ +    +      ++ RH   L++T   LE   
Sbjct: 365 EETPVISISAKYGDGIDNFIMELKNMMFHGRIDVNQEVYITNARHKDALAKTYESLECVE 424

Query: 395 -LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              E     D    +L  A   LG I G    E L++ IFSKFC GK
Sbjct: 425 RSIEAGMPEDFFTIDLMNAYEKLGLIIGESVEEDLVNEIFSKFCTGK 471


>gi|150021216|ref|YP_001306570.1| tRNA modification GTPase TrmE [Thermosipho melanesiensis BI429]
 gi|205829182|sp|A6LMN4|MNME_THEM4 RecName: Full=tRNA modification GTPase mnmE
 gi|149793737|gb|ABR31185.1| tRNA modification GTPase TrmE [Thermosipho melanesiensis BI429]
          Length = 441

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 150/445 (33%), Positives = 246/445 (55%), Gaps = 14/445 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI AVS+     AI++IR+ GP    + + +    K   R+     +   +G ILD+ 
Sbjct: 2   FDTIAAVSSPHGTGAIAVIRIDGPKSHDIAKKLTGLNKVEYRRV-YTTYLNFEGDILDQV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
            ++ F SP S+TG D  E + HGGI V   +L+ + K    R+A  GEF++R F NGKI 
Sbjct: 61  NIVFFKSPNSYTGNDLIEIYTHGGILVTQNVLDAILKS-GARIAKRGEFTKRGFLNGKIS 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++AE++  +I +++E+  ++S++ + G+L      +  ++ ++ S IE   D+ ++ ++
Sbjct: 120 LVQAEAIYQIIEAKSEVSLKMSLQNLKGKLGEEIEYYRGEILNVLSEIEVTFDYPDDIEL 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                K +LN +  LK+++   I   K   ++ NG  + I+G  N+GKS+L N L  +D 
Sbjct: 180 DE---KSILNLLSKLKDEVGRKIEDSKKSIMLNNGIVMTIVGKPNSGKSTLLNRLLLEDR 236

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRDV+  ++++ G    I DTAGIRET D+VEK GI+R+  E++ AD+IL 
Sbjct: 237 AIVTDIPGTTRDVIKGEIEINGIRFVIVDTAGIRETKDVVEKIGIERSLKEIQKADVILF 296

Query: 305 LKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD--HLISSFTGEGLEELIN 356
           + +         K  +   +  ++I +  K D  + + + +D    IS+  GEGL+ L N
Sbjct: 297 VLDATTGFTKEDKLILRKIEGGNYIPVWNKCDEGNNFNKIFDGEIKISALNGEGLKNLEN 356

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASVS 415
           KI S + N  +    S    +R +  L +   +LE A  N      +D+I+ +LR A   
Sbjct: 357 KIVSKVKNIIESGTASHVITQRQVEILERVYTHLESAVNNLNMGYEIDLISIDLRRALEE 416

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           L  + G    + LLD IFS FC+GK
Sbjct: 417 LDMLIGRKFSDDLLDNIFSNFCVGK 441


>gi|193624724|ref|XP_001945984.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
           [Acyrthosiphon pisum]
          Length = 485

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 169/469 (36%), Positives = 265/469 (56%), Gaps = 30/469 (6%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYFFGLD-GR 59
           + +K TI+A+S+G     +++IR+SGP +   +      K  P PRKA L          
Sbjct: 17  SRQKSTIYALSSGLGKCGVAVIRVSGPCTSKAILNMTHLKYLPRPRKACLNKIIDPTTKE 76

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD GLL+ FP P+SFTGED  EF VHGG AVV  +L+ L+K+P+ R A+PGEF++R+F 
Sbjct: 77  QLDIGLLLWFPGPKSFTGEDCCEFQVHGGRAVVTSVLQGLSKLPDFRPADPGEFTKRSFY 136

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N K+DL E E LADLI ++TE+QR+ ++  + G L  LY  W   L    +++EA +DFS
Sbjct: 137 NNKMDLTEVEGLADLIEADTELQRKQALMQLEGSLRQLYDSWRQYLLENLAYVEAYIDFS 196

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +++++   + V  ++  L  +I  H+   + GE++R+G K+ I+G  N GKSSL N+L
Sbjct: 197 ETDNIEDLVLENVKENLEKLAKEIEMHLMDNRSGELLRDGVKVAIIGAPNTGKSSLLNSL 256

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVEN 298
             ++ AIVT++PGTTRD + + LD+ GY V + DTAGIR +T D++E  GIK++ ++ E+
Sbjct: 257 CSREAAIVTELPGTTRDPIQVPLDVSGYSVLLIDTAGIRSQTVDLIEGLGIKKSKVQAES 316

Query: 299 ADLILLLKEINSKKEIS------------FPKNIDFIFIG-TKSD-----------LYST 334
           AD+++L+ +     ++                  D   +   K D             S 
Sbjct: 317 ADMVILVTDAQCLLDVDNIDLWLKKHVENLKVQCDNCLVYVNKIDNLSDDQVIRLKKVSQ 376

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH--KRHLYHLSQTVRYLEM 392
            ++      S    EGL +++   ++ L        F  P     RH Y L   +  ++ 
Sbjct: 377 NSKWTLCFGSCKVNEGLMDMMRTFENCLQQLCGNPNFEHPRCSQARHRYCLLNALNNVQT 436

Query: 393 -ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              ++E D  +D+ A++LR A++ +GKITG V  E++L  IFSKFCIGK
Sbjct: 437 YLKISESDKNIDVAAQHLRKATLYVGKITGHVSTEEVLTEIFSKFCIGK 485


>gi|312885532|ref|ZP_07745170.1| tRNA modification GTPase trmE [Mucilaginibacter paludis DSM 18603]
 gi|311302000|gb|EFQ79031.1| tRNA modification GTPase trmE [Mucilaginibacter paludis DSM 18603]
          Length = 468

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/461 (32%), Positives = 245/461 (53%), Gaps = 26/461 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGR 59
           + ++ETI A++T     AI IIRLSGP    +   + K K    ++AS    FG  +DG 
Sbjct: 12  STKEETIVALATPNGTGAIGIIRLSGPDAIAIANSVFKGKD-LTQQASHTIHFGNIVDGE 70

Query: 60  I-LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + LD+ L  VF +P+S+T E+  E   HG   ++  I++ L      R A PGEF+ RAF
Sbjct: 71  VVLDEVLASVFIAPKSYTRENVVEISCHGSAYIIESIIK-LFIRQGARGAKPGEFTLRAF 129

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ADLI+S ++  ++++M+ + G  S+   Q  D+L    S IE +LDF
Sbjct: 130 INGQLDLSQAEAVADLIASNSKASQQVAMQQLRGGYSNQLKQLRDQLVTFASLIELELDF 189

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           SE EDV+  +  ++   ++ +   I+  I   +LG  I++G   VI G  NAGKS+L NA
Sbjct: 190 SE-EDVEFANRGQLKQLVVDISKMINQLIQSFELGNAIKHGVNTVIAGRPNAGKSTLLNA 248

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+ I GTTRD +   L++ G   ++ DTAG+RE  D +E  G+++T  ++  
Sbjct: 249 LLNEDRAIVSHIAGTTRDTIEEILNINGINFRLVDTAGLREATDTIEAIGVQKTLEKISQ 308

Query: 299 ADLILLLKEINSKKEISFPKN--------IDFIFIGTKSDLYSTYTEEYDHL-------- 342
           + L+L + +  +        +        +  + +  K DL S                 
Sbjct: 309 SALLLYVFDAEAMTGADVALDLENLLHPGVPVVAVANKIDLLSDGKLAAGFNLPAEVELI 368

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            +S+   + +++L   I +           ++ ++ RHL  L +T + L    LN  D  
Sbjct: 369 TVSAREKQHIDQLKQVIYNSAVQGKLTGNETLVTNIRHLEALQKTEQALVRV-LNGIDNP 427

Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  D +A +++ A   LG+ITG V  + LLD IFSKFCIGK
Sbjct: 428 ITSDFLAMDIKQALHYLGEITGSVTTDDLLDNIFSKFCIGK 468


>gi|160889085|ref|ZP_02070088.1| hypothetical protein BACUNI_01506 [Bacteroides uniformis ATCC 8492]
 gi|317479360|ref|ZP_07938494.1| tRNA modification GTPase TrmE [Bacteroides sp. 4_1_36]
 gi|156861552|gb|EDO54983.1| hypothetical protein BACUNI_01506 [Bacteroides uniformis ATCC 8492]
 gi|316904434|gb|EFV26254.1| tRNA modification GTPase TrmE [Bacteroides sp. 4_1_36]
          Length = 464

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 147/468 (31%), Positives = 238/468 (50%), Gaps = 32/468 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-----KKKKPFPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP   ++   I       KK    +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGCIRVSGPDAIEITSRIFTPARKGKKLKDAKPYTLTFGHI 57

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            +   I+D+ L+ +F +P S+TGEDS E   HG   ++  +L+ L      RLA PGE++
Sbjct: 58  HEEENIIDEVLVSLFRAPHSYTGEDSTEIMCHGSSYILQKVLQLLI-GNGCRLAAPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF  GK+DL +AE++ADLI+S +    RL+M  M G  S       D+L H  S IE 
Sbjct: 117 QRAFLGGKMDLSQAEAVADLIASTSAATHRLAMSQMRGGFSKELASLRDQLLHFTSLIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ E+++     E+      ++  IS  +    +G  I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSDHEELEFADRSELCLLADGIEQVISRLVQSFSVGNAIKNGVPVAIIGETNAGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL  ++ AIV+DI GTTRDV+   ++L G   +  DTAGIRET+D +E  GI+RTF 
Sbjct: 237 LLNALLNEERAIVSDIHGTTRDVIEDTVNLGGITFRFIDTAGIRETNDTIENLGIERTFQ 296

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLY---------STYT 336
           ++E A+++L + +           + + +   +    I +  K+DL          S   
Sbjct: 297 KLEQAEIVLWIVDATNAVSRIPQLTTQILPRCEGKRLILVFNKTDLVQDASTIPNSSFTV 356

Query: 337 EEYDHLISSFTGEG---LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +    S + +G   L++L   + S  +         I ++ RH   L+  +  +   
Sbjct: 357 AATNVQCISISAKGRTNLDKLQQMLISAANLPTVTQNDVIVTNIRHYEALTHALEAIHRV 416

Query: 394 SLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                ++   D +++++R     L  I G V  + +L  IF  FCIGK
Sbjct: 417 QQGLAENLSGDFVSQDIRECIFHLSDIAGEVTNDMVLGNIFEHFCIGK 464


>gi|284038159|ref|YP_003388089.1| tRNA modification GTPase TrmE [Spirosoma linguale DSM 74]
 gi|283817452|gb|ADB39290.1| tRNA modification GTPase TrmE [Spirosoma linguale DSM 74]
          Length = 458

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 148/459 (32%), Positives = 237/459 (51%), Gaps = 23/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF---PRKASLRYFFGLDGR 59
           ++ E I A++T     AI+++R+SG    ++   + + K         A        DG 
Sbjct: 2   YQLEPIAALATAPGIGAIAVVRVSGEGAIELTNRLFRGKDLTQQTSHTAHFGTLRNEDGS 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L  VF +P+SFT ED  E   HG   ++  IL  L +   +RLA PGEF++RAF 
Sbjct: 62  IIDEVLATVFRAPKSFTKEDVVEISCHGSEFIIQQILRRLMQ-EGVRLARPGEFTQRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+ DL++AE++ADLI+S+++   R ++  + G  S    +   +L    + +E +LDF 
Sbjct: 121 NGQFDLVQAEAVADLIASDSDASHRAALTQLRGGFSKQLKELRQQLIDFVALVELELDFG 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV+      +   +L ++  +   I     G  I+NG   VI+G  NAGKS+L NAL
Sbjct: 181 E-EDVEFAHRDRLRQLMLDIRRVLHPLIESFSTGNAIKNGVPTVIVGKPNAGKSTLLNAL 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DIPGTTRDV+  +L ++G   ++ DTAG+R+  D +E  GI+RT  ++ +A
Sbjct: 240 LNEEKAIVSDIPGTTRDVIEDELFIDGIRFRLIDTAGLRQATDRIEAIGIERTQQKMRDA 299

Query: 300 DLILLLKEINSKKEISF--------PKNIDFIFIGTKSDLY--------STYTEEYDHLI 343
            L++ L +  + K                 ++ +G K D           T   E    I
Sbjct: 300 SLVVYLFDAKNVKADELQTAVDEVRASRKPYLLVGNKLDAITDTTRESLETMLGESVVWI 359

Query: 344 SSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCG 401
           S+     L+EL   + + +      +   ++ ++ RH  HL+ T   L  A         
Sbjct: 360 SAANQTHLDELKAALSARVRTDAAVQTGSAVVTNSRHYNHLTGTDEALARAIHGLDTSVT 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D +A +LR+A   LG++TG +  + LLD IFSKFCIGK
Sbjct: 420 PDWLAMDLRVALQHLGELTGEITTDDLLDSIFSKFCIGK 458


>gi|58584293|ref|YP_197866.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|81311677|sp|Q5GTQ0|MNME_WOLTR RecName: Full=tRNA modification GTPase mnmE
 gi|58418609|gb|AAW70624.1| Predicted GTPase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 442

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 165/447 (36%), Positives = 258/447 (57%), Gaps = 12/447 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M +  ETIFA+ST    S +++IR+SG    +        K   PR A+L   +    ++
Sbjct: 1   MMNTDETIFALSTVFGKSGVAVIRISGNHALKALNHFHVNKDMKPRFATLVDLYDSSDQL 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ I FP+P SFTGED  E  VHGG AV+  +LEEL+++    +A PGEF  RAF N
Sbjct: 61  IDNGIAIYFPAPNSFTGEDVIELQVHGGKAVIKIVLEELSRI--FVMAKPGEFLLRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK DL + E +ADLI +ET+MQ + +++ MSGEL  LY  W  +L  ++S IEA +DF E
Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAIKQMSGELEKLYSSWRQRLIAVQSKIEAYIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   +    +++ +++  L   I  H++  + GE +R G  IVI G  N GKS+LFN LA
Sbjct: 179 DVATEKNELEKINDEVQTLVQSIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++D+AIV++  GTTRD+L   +D+ GY + +SDTAGIRE+ D VE EGI R       AD
Sbjct: 239 RRDIAIVSEYVGTTRDILEAHIDIGGYPIILSDTAGIRESSDPVESEGISRAKKRSCEAD 298

Query: 301 LILLLKEINSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYD----HLISSFTGEGLEEL 354
           L + L     +  I  +   +     +    D+ + +  +        +S   G G E+L
Sbjct: 299 LRIELFPFEQRYNINCNVISSNTIYVLSKADDVINDHDIKISDIDFLPVSILKGIGTEKL 358

Query: 355 INKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           ++ IK  +  KF       + + +RH   + + + +L   ++N     +++++E+LRLA+
Sbjct: 359 VSVIKEKVEEKFVYDRDVPVITRQRHRNCMQKAIEHLRRFNMNN---PIELVSEDLRLAA 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LG +TG ++VE++LD IF+ FC+GK
Sbjct: 416 SELGVVTGIINVEEVLDDIFNNFCVGK 442


>gi|217978725|ref|YP_002362872.1| tRNA modification GTPase TrmE [Methylocella silvestris BL2]
 gi|217504101|gb|ACK51510.1| tRNA modification GTPase TrmE [Methylocella silvestris BL2]
          Length = 448

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 170/440 (38%), Positives = 256/440 (58%), Gaps = 5/440 (1%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRIL 61
              +TIFAV++GA  +A++I+RL+GP+   + + +  +  P PR A+L  F     G  +
Sbjct: 12  RSGDTIFAVASGAGRAAVAILRLTGPASGAIVKAVAGR-LPPPRVATLATFRDPATGEAI 70

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+GL+I F  P S+TGEDSAEFH+HGG AVV G++  +      R A  GEFSRRA  NG
Sbjct: 71  DQGLVIFFQGPRSYTGEDSAEFHIHGGRAVVAGLIAAIGSFEGARAAEAGEFSRRALMNG 130

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL + E + DL+++ET  QRR ++   +G L    G W   L    + I AD+DFS+E
Sbjct: 131 KLDLGQIEGIGDLVAAETASQRRQALRQTAGMLGRRAGGWRAALIEASARIAADIDFSDE 190

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            DV    + ++   I  +  ++   +   + GE IR G  IVI G  NAGKS+L NALA+
Sbjct: 191 GDVAAAPALDIAPIIAPVLAELRGELHAARAGERIREGLTIVIAGPPNAGKSTLLNALAR 250

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +DVAIV+   GTTRDVL ++LDL GY   + DTAG+RET D VE+ G+ R     +NADL
Sbjct: 251 RDVAIVSKHAGTTRDVLEVELDLGGYAAVLIDTAGLRETTDPVEQIGVSRALERAQNADL 310

Query: 302 ILLLKEINS-KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           +L L E+   +   +   + +   + TK+DL  +   E    IS+ +G  L+ L++++  
Sbjct: 311 VLWLSELGDFQAPDARLTDAELWQVATKADLAPSAQAEAALCISAASGLNLDVLLDRLAQ 370

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
             +         + + +RH   +++    L  A +      ++I+AE+LR A  +L ++ 
Sbjct: 371 FAAEAGGAGHDGVITRERHRKSIAEAESAL--ARILSDSAPVEIVAEDLRAALFALERLV 428

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G VDVE +L  IFS+FCIGK
Sbjct: 429 GRVDVEDILGDIFSRFCIGK 448


>gi|327398259|ref|YP_004339128.1| tRNA modification GTPase mnmE [Hippea maritima DSM 10411]
 gi|327180888|gb|AEA33069.1| tRNA modification GTPase mnmE [Hippea maritima DSM 10411]
          Length = 453

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 144/454 (31%), Positives = 245/454 (53%), Gaps = 18/454 (3%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FPRKASLRYFFGLDGRI 60
            H+++ I A++TG   +AI IIR+SG  C ++ E I  KK P    +    +     G++
Sbjct: 3   QHDEDIIAAIATGYTEAAIGIIRVSGKGCLELLEKIFTKKPPYKANRLYYGHITDKQGKV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L+ +F +P S+TGEDS E + HGG+ V+N +LE + +    RLA PGEF++RAF N
Sbjct: 63  LDEVLVSIFKAPHSYTGEDSFEINCHGGLVVLNSVLERVMEA-GARLAQPGEFTKRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++A +IS++++    ++   + G  SS   +  +++ ++ +  E  +D  E
Sbjct: 122 GKLDLSQAEAVAKVISAKSKRAVDVAQRQLQGNFSSKLDEIREQILYLMAENEVRIDHPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+ + S++E +  I  ++N +   +   + G  +  G  + ++G  N GKSSL N + 
Sbjct: 182 -EDLSDVSTEEKIRTISDIQNKLKQILRAAEFGNHLFEGVILALVGKPNVGKSSLLNLIT 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTDIPGTTRDV+    ++ G    I DTAGIR+T+D VEK G+KR+   ++ AD
Sbjct: 241 GSERAIVTDIPGTTRDVVKEQFNINGVPFSILDTAGIRKTNDTVEKIGVKRSLKAIDEAD 300

Query: 301 LILLLKEIN------SKKEISFPKN--IDFIFIGTKSDL-----YSTYTEEYDHLISSFT 347
           ++L + + +       KK I   K+     I I  K+DL           E+   +S  +
Sbjct: 301 IVLAIFDGSNDLTQEDKKLIERLKSSAKPIIAILNKTDLGIKINKDNLPFEHLLELSCKS 360

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIA 406
           G+GL++L   + +I           +  +      L + ++  E      + D    +I 
Sbjct: 361 GKGLDKLEKTLSNIALGGVDDSQI-VSLNASQKQSLKKAIQMCEQLKNDIDNDIDPALIG 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    +  L ++ G +  E +LD++F KFCIGK
Sbjct: 420 VDFMALTDYLDEVIGKITNEDMLDVMFKKFCIGK 453


>gi|332882875|ref|ZP_08450484.1| tRNA modification GTPase TrmE [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679195|gb|EGJ52183.1| tRNA modification GTPase TrmE [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 464

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 149/465 (32%), Positives = 239/465 (51%), Gaps = 29/465 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFP---RKAS---LRYFF 54
           + ++TI A++T     AI +IR+SG     + + I     K P P   RKA      +  
Sbjct: 2   NTQDTICAIATAQG-GAIGVIRISGKDAIAITDRIFTPVGKHPLPLSERKAYTMAFGHIR 60

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             DG I+D+ L+ +F SP S+TGED  E   HG   ++  +++ L +    R A PGEF+
Sbjct: 61  QDDGEIIDEVLIGLFKSPHSYTGEDCVEISCHGSSFILQQVMQLLIR-KGCRAAGPGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    R++M  M G  S       ++L H+ S +E 
Sbjct: 120 QRAFLNGKMDLSQAEAVADLIASSSAATHRMAMNQMRGGFSRELSALRERLLHLTSLMEL 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ E+++     E+      ++  IS  +    +G +++NG  + I+G +NAGKS+
Sbjct: 180 ELDFSDHEELEFADRSELETIAGDIEKVISGLVHSFSVGNVLKNGIPVAIVGETNAGKST 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIV+DI GTTRDV+   ++L G   +  DTAGIR+T D +E  GI R+F 
Sbjct: 240 LLNTLLNEEKAIVSDIHGTTRDVIEDTVNLSGITFRFIDTAGIRDTHDTIENMGIARSFH 299

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD----- 340
           ++E A+++L + +           S + +    N   I +  KSD  S    +       
Sbjct: 300 KMEQAEIVLWVVDNTCAEAQIRQLSPRILPLCSNKQLIILLNKSDQVSAVPTKLSGLPEN 359

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
                IS+    G++EL N +    S         I ++ RH   LS  +  +       
Sbjct: 360 TVTLSISAKEKTGIQELQNLLVKTASVPELTSSDLIVTNVRHYEALSLALEDIHRVQNGL 419

Query: 398 K-DCGLDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           +     D I+++LR     L +I  G +  +++L  IF KFCIGK
Sbjct: 420 QTHLSGDFISQDLRECLFHLAEIVGGEITADEVLGNIFMKFCIGK 464


>gi|160914941|ref|ZP_02077155.1| hypothetical protein EUBDOL_00949 [Eubacterium dolichum DSM 3991]
 gi|158433481|gb|EDP11770.1| hypothetical protein EUBDOL_00949 [Eubacterium dolichum DSM 3991]
          Length = 442

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 143/446 (32%), Positives = 250/446 (56%), Gaps = 16/446 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG---RIL 61
           ++TI A+ST A+  AISIIR+SG     + + +           ++ Y F +D      +
Sbjct: 3   QDTIAAISTAAVDGAISIIRMSGNDAIDIADRLTSIDLTKKASHTISYGFIIDPITKEEV 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ VF +P++FT ED  E + HGG  +   IL+ L      RLA  GEF+RRAF +G
Sbjct: 63  DEVLISVFHAPKTFTCEDIVEINCHGGRFITKKILQ-LCLAQGARLAEAGEFTRRAFLHG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I ++T +  RL+M G+ G + +L    I  +  + + IE ++D+ E 
Sbjct: 122 RIDLTQAEAINDMIMADTNVNARLAMHGIKGSVKALLDPLISTMLDMIANIEVNIDYPEY 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +DV+  +++++L         I   + +   G++++ G K  I+G  N GKSSL NAL +
Sbjct: 182 DDVEQLTNEKLLPKAQVWLKKIDEILDKANSGQMLKEGIKTAIIGKPNVGKSSLLNALLE 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVTDI GTTRD++   + L G  + + DTAGIRET+D+VE+ GI+R+   +E A L
Sbjct: 242 EDKAIVTDIAGTTRDIVEGRIHLSGLTLHLIDTAGIRETEDVVEQIGIQRSIKAIEEAQL 301

Query: 302 ILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           ++++       +   +K ++  K+   I +  KSDL     ++++ +  S     ++ L+
Sbjct: 302 VIVVLDGSREIDAEDEKLLALAKDKTHIVVYNKSDL-----KQHEGICISAAKGEIQPLL 356

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRLASV 414
           +KI  +  +    +   + +++R +  + +  +  L+          LD++A +++ A  
Sbjct: 357 DKIHELYDHHQLVVEEPLLTNERQISQMLKAKQSMLQAIQAMNMQMTLDLVAIDIQDAYT 416

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L +I G V  E LLD +FS FC+GK
Sbjct: 417 ALKEILGEVHHEDLLDTLFSNFCLGK 442


>gi|46445656|ref|YP_007021.1| tRNA modification GTPase TrmE [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|81829092|sp|Q6MFA3|MNME_PARUW RecName: Full=tRNA modification GTPase mnmE
 gi|46399297|emb|CAF22746.1| probable GTP-binding protein in thiophene and furan oxidation
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 458

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 232/452 (51%), Gaps = 16/452 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR--KASLRYFFGLDGRI 60
           +  ETI A++T      ++IIR+SG    +V   I        R   A     +   G  
Sbjct: 9   YPGETIAAIATPPGEGGVAIIRISGDQSLEVAAKIFSGPIFSYRSHTAHYGQIYNSSGEH 68

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  L+++     S+TGE++ E H HGG  +   +LE +      R A PGEF+ +A+ N
Sbjct: 69  VDDVLVLIMLGKRSYTGENTVEIHCHGGSLITRKVLE-VVLAAGARAALPGEFTFKAYMN 127

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL +AE++ +LI ++ E     +   + G LS+    +   LT I + +EA +DF E
Sbjct: 128 GKIDLAQAEAVQELICAKNEKALGAAESQLKGSLSNRVLAFQSTLTQIAAILEAWVDFPE 187

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E ++  +  E+  D+     D+   ++    G+I+ +G  I ++G  N GKSSL NAL 
Sbjct: 188 -EGLEFATMDELDQDLERTAKDMEKLVNSFHNGKILHDGLSICLIGCPNVGKSSLMNALL 246

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            KD AIV+ IPGTTRDVL   L L G  +K+SDTAGIRE ++ VE+EGI+R+   ++ AD
Sbjct: 247 DKDRAIVSPIPGTTRDVLEDHLRLNGLHIKLSDTAGIREANESVEQEGIRRSKKAMQEAD 306

Query: 301 LILLLKEIN---SKKEISFPKNIDFI---FIGTKSDLYSTYTEEYD----HLISSFTGEG 350
           LILL+ + +    K++    K + F     I  K DL        +      +S+    G
Sbjct: 307 LILLVLDAHKGLEKEDQELLKQVPFHKTIVIWNKIDLNPRNLPCLEVPFLVHLSAKEKIG 366

Query: 351 LEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAEN 408
           LEEL   I +I+  +        + ++ RH   L +++  L    +        + +  +
Sbjct: 367 LEELHQTIDTIIWQDGPPSKEEILITNVRHKEALIESIESLRRVKIGLRHQVSPEFLTLD 426

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +R + + LGKI G    E +L  IFSKFCIGK
Sbjct: 427 MRQSLLELGKIIGTNISEDILSAIFSKFCIGK 458


>gi|229829511|ref|ZP_04455580.1| hypothetical protein GCWU000342_01603 [Shuttleworthia satelles DSM
           14600]
 gi|229791942|gb|EEP28056.1| hypothetical protein GCWU000342_01603 [Shuttleworthia satelles DSM
           14600]
          Length = 482

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 157/482 (32%), Positives = 243/482 (50%), Gaps = 47/482 (9%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL------- 56
           + +TI AV+T    + I IIR+SGP    + + + + KK      S    +G        
Sbjct: 3   QGDTIAAVATAMSNAGIGIIRISGPDAIAIADSVFRGKKALAEMESHTISYGHIVEDKGK 62

Query: 57  -----DGR---------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102
                +G          ++D+ L+ VF +P ++T ED  E + HGGI ++  IL  L   
Sbjct: 63  TGGISEGEGTKDTGQVCLIDEVLVSVFRAPRTYTREDLVEINCHGGILILQKIL-RLLFS 121

Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162
              R A PGEF++RAF NG+ID+ +AES+ DLI +++E+  R SME +SG LS       
Sbjct: 122 CGARPAEPGEFTKRAFLNGRIDMAQAESVMDLIHAQSELAIRNSMEQLSGALSCRIRDMR 181

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
           +KL +  +FIE+ LD  E  D+  +S K   N +  L   +   ++  K G  +R+G   
Sbjct: 182 EKLLYEIAFIESALDDPEHYDLDGYSDKL-RNQVENLSAALERLLASSKEGSYLRDGILT 240

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  NAGKSSL NALA +D AIVTDIPGTTRD L   + L    +++ DTAGIRE++D
Sbjct: 241 AIVGRPNAGKSSLLNALAGRDRAIVTDIPGTTRDTLEERVRLGNLALRLIDTAGIRESED 300

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN----------IDFIFIGTKSDLY 332
            +E+ G+++    +E ADLI+ + + +   E    K              I +  K DL 
Sbjct: 301 RIEQIGVEKARKSMEEADLIIFVMDASLPLENEDCKMLNQLSSHGYLEHSIILLNKMDLT 360

Query: 333 STYTEEYDHL------------ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRH 379
           S  + E                +S+   EGL+ L + I+ +    + ++    + ++ RH
Sbjct: 361 SILSAEQIQQVLPQLNPDRILSVSARREEGLDLLASAIERMFFTGQVRENQEILITNARH 420

Query: 380 LYHLSQTVRYLEMASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
            Y L +  + L++     ++    D +  +L      LG ITG    + L D IFSKFC+
Sbjct: 421 TYALQEARKALDLVLEGIDQGITEDFLTVDLMNCYEQLGLITGETLEDDLADEIFSKFCM 480

Query: 439 GK 440
           GK
Sbjct: 481 GK 482


>gi|315497189|ref|YP_004085993.1| tRNA modification gtpase trme [Asticcacaulis excentricus CB 48]
 gi|315415201|gb|ADU11842.1| tRNA modification GTPase TrmE [Asticcacaulis excentricus CB 48]
          Length = 446

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 180/451 (39%), Positives = 259/451 (57%), Gaps = 16/451 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M H K+TIFA+++    + +S+IR+SGP   QV E +  +  P PR A+L +    DG +
Sbjct: 1   MFHVKQTIFALASAQGRAGVSVIRISGPQAAQVVEALLGR-LPRPRYATLGHLR-YDGEL 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L++ F  P SFTGED AEFH+HG  AV+   L  + +   LR A PGEFSRRAFEN
Sbjct: 59  IDQALVLWFKGPSSFTGEDCAEFHIHGSRAVLER-LYGVFRALGLRHAEPGEFSRRAFEN 117

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE+++DL+ +E+E QRR ++  + G     Y QW D L  I + IEA +DF +
Sbjct: 118 GKLDLTQAEAISDLVEAESEAQRRQALMQLEGGFRDRYAQWRDALIRILAHIEAIVDFPD 177

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    S+ ++ DI+ LK ++ + IS  + G+ IR GY+I I+G  NAGKSSLFNAL 
Sbjct: 178 -EDIPEHLSERIVADIITLKTEVGAAISDARRGQQIREGYRIAIMGKPNAGKSSLFNALL 236

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + D AIVT I GTTRDV+   + +  Y   I DTAG+RET+D+VE EGI+R     ++AD
Sbjct: 237 QTDAAIVTPIAGTTRDVIESPIRIGPYAALIYDTAGLRETEDVVESEGIRRAKARGQSAD 296

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSD---------LYSTYTEEYD--HLISSFTGE 349
           L L + + +   E           I  KSD         L S Y ++       S   GE
Sbjct: 297 LRLWVLDASDAPEDLSAMQSGDYLILNKSDQVSSQALAALRSQYEDKKVRLFETSLTKGE 356

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           G++ +   ++  L        F   + +RH   L +    L+ A L       +++AE++
Sbjct: 357 GIDAVRRALEVDLEAALSLSTFPAATRERHSERLREVDAALDRA-LGIGFATPELMAEDI 415

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R A  +   + G  DVEQ+LD IFS FCIGK
Sbjct: 416 RQALSAFDALFGRTDVEQVLDHIFSSFCIGK 446


>gi|298209078|ref|YP_003717257.1| putative tRNA modification GTPase [Croceibacter atlanticus
           HTCC2559]
 gi|83849005|gb|EAP86874.1| putative tRNA modification GTPase [Croceibacter atlanticus
           HTCC2559]
          Length = 469

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 154/468 (32%), Positives = 242/468 (51%), Gaps = 34/468 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL---DGR 59
            +TI A++T +   AI+IIR+SG    ++   +   K  K      S     G    + +
Sbjct: 4   NDTIVALATASGAGAIAIIRVSGKDAIEIVNPLFSAKSGKQLKDVNSHTIHLGDVKDNAK 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L+ VF   +S+TGE + E   HG   +   I++ L +    R ANPGEF+ RAF 
Sbjct: 64  IIDEALVSVFKGTKSYTGEPTVEISCHGSHYIQQEIIQLLLR-KGCRAANPGEFTLRAFI 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI+S+ E   +L+++ M G  S+   +  ++L +  S IE +LDF+
Sbjct: 123 NGKMDLSQAEAVADLIASDNEASHQLALQQMRGGFSTEIAKLREELLNFASLIELELDFA 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV+  +  E  N +  ++  +   I     G +I+NG  I I+G  N GKS+L NAL
Sbjct: 183 E-EDVEFANRDEFQNLVTRIQTVLKRLIDSFATGNVIKNGIPIAIVGEPNVGKSTLLNAL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DI GTTRD +  ++ + G   +  DTAGIRET D++E  GIK+TF ++E +
Sbjct: 242 LNEERAIVSDIAGTTRDTIEDEISIGGIGFRFIDTAGIRETKDVIEGLGIKKTFEKIEKS 301

Query: 300 DLILLLKEI-----------NSKKEISFPKNI----DFIFIGTKSD---------LYSTY 335
            + + L +            N K E+   KN       + I  K D         L    
Sbjct: 302 QVTVYLFDASLIKNDAIRIKNLKVEVEKIKNRFPQKPLLVIANKIDALLDSEIQNLIDNL 361

Query: 336 TEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
                H   IS+ TG G+EEL   +   ++    K   +I ++ RH   L + +  +   
Sbjct: 362 KPHTTHLLTISAKTGLGIEELQTTLLDFVNTGALKNNDTIITNSRHYDALLKALEEINKV 421

Query: 394 SLNEK-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 +   D++A ++R A    G+ITG V  ++LL  IF+ FCIGK
Sbjct: 422 QDGLNANLPSDLMAIDIRQALFHFGEITGQVTNDELLGNIFANFCIGK 469


>gi|171464336|ref|YP_001798449.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193874|gb|ACB44835.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 454

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 150/457 (32%), Positives = 250/457 (54%), Gaps = 20/457 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   K  I A++T    + + ++R+SG +   +   + +KK   PR+A+L       G+ 
Sbjct: 1   MMTRKLPIIAIATAPGKAGVGVVRISGQNLIDLTTALFQKKLS-PRQANLLTLSDEHGQT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEFSRRA 117
           +D+ + I F  P SFTGED  E   HGG  ++  +++      K   L +A PGEF+ RA
Sbjct: 60  IDQLIAIYFAGPASFTGEDVLELQCHGGPQLLELVMKRCLELGKNEGLVIAEPGEFTLRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           + N KIDL +AE++ADLI +++E   R +   + G  S      I+++T +R  +E+ LD
Sbjct: 120 YLNNKIDLAQAEAIADLIDAQSEAAVRGAACSLQGAFSDDINNLIEEITQLRILVESTLD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E E+++   + +    ++ +K  + +  +  K G+I+R+G ++V+ G  N GKSSL N
Sbjct: 180 FPE-EEIEFLENAQARQRLVTVKEKLHTLRAGAKQGKILRDGVQLVLAGAPNVGKSSLIN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++VAIVT I GTTRD +   + ++G  + I DTAG+RET D+VE +GI+R++  + 
Sbjct: 239 RLVGEEVAIVTPIAGTTRDRVRESITIDGVPMHIMDTAGLRETADLVEAKGIERSWDSIR 298

Query: 298 NADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEY---DHLISS 345
            ADL++ L +  S  +            P     + +  K+DL S +++       LIS+
Sbjct: 299 LADLVIFLTDAQSGAQKDDLKTQILKELPSKCAVLEVVNKADLLSDHSKSPSTGALLISA 358

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLD 403
            TG G+E L  KI +++         +I + +RHL  + +   ++E +       +  L+
Sbjct: 359 KTGAGIELLKQKILALV-GWSGPQEGAILARRRHLDCIERAAEHIERSEYFAANGNNSLE 417

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + AE L LA   LG+ITG +  + LL  IFS+FCIGK
Sbjct: 418 LFAEELSLAQKHLGEITGKLLPDDLLGKIFSQFCIGK 454


>gi|163788828|ref|ZP_02183273.1| tRNA modification GTPase [Flavobacteriales bacterium ALC-1]
 gi|159876065|gb|EDP70124.1| tRNA modification GTPase [Flavobacteriales bacterium ALC-1]
          Length = 461

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 146/462 (31%), Positives = 234/462 (50%), Gaps = 27/462 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL---DG 58
             +TI A++T +   AI++IRLSG     +     K    K    +++     G      
Sbjct: 2   HNDTIVALATPSGSGAIAVIRLSGSEAITIASKCFKSVTNKDLKEQSTHTIHLGHIMDAK 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ LL VF +P S+TGED  E   HG   +   I++ L      R+A  GEF+ RAF
Sbjct: 62  KTVDEVLLSVFKNPNSYTGEDVIEISCHGSSYIQQEIIQ-LFLRQGCRMATAGEFTLRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLISS+ E   +++M+ M G  SS   +  ++L +  S IE +LDF
Sbjct: 121 LNGKLDLSQAEAVADLISSDNEASHQIAMQQMRGGFSSEIAKLREELLNFASLIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E EDV+     +    I  +   +   I    +G +I+NG  + I+G  N GKS+L NA
Sbjct: 181 AE-EDVEFADRTQFKQLIERINFVLKRLIDSFAVGNVIKNGIPVAIVGEPNVGKSTLLNA 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV++I GTTRD +  ++ + G   +  DTAGIRET D+VE  GIK+TF ++E 
Sbjct: 240 LLNEDRAIVSEIAGTTRDTIEDEISIGGIGFRFIDTAGIRETKDVVESIGIKKTFEKIEQ 299

Query: 299 ADLILLLKEINSKKE------ISFPK------NIDFIFIGTKSDLYSTYTEEYDHLI--- 343
           + + + L +     +      I   K          + I  K D          +     
Sbjct: 300 SQVTIYLFDAQKNSDNLEAVRIEVEKIRNKYPQKPLLVIANKIDALDDLQLAEINRTIAD 359

Query: 344 ----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
               S+ TG G+E+L + + ++++    +   +I ++ RH   L +    ++      E 
Sbjct: 360 VLLLSAKTGFGVEQLTSSLLNLINTGALRNNETIVTNSRHYDALLKAFEEIQKVQHGLET 419

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D++A ++R A    G+ITG +  + LL  IF+ FCIGK
Sbjct: 420 GLSGDLLAIDIRQALYHFGEITGEITNDDLLGNIFANFCIGK 461


>gi|218960498|ref|YP_001740273.1| tRNA modification GTPase trmE [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729155|emb|CAO80066.1| tRNA modification GTPase trmE [Candidatus Cloacamonas
           acidaminovorans]
          Length = 457

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 159/460 (34%), Positives = 235/460 (51%), Gaps = 23/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL----RYFFGL 56
           M+   E I A  T    SAI++IRLSG  C ++      + +      S       F+  
Sbjct: 1   MSKISEVICAPVTPLGFSAIAVIRLSGKGCIELVANHFSQSQKLLSSPSHNLILGTFYAE 60

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G  +D+ L+ VF  P S+TGED  E   HG   +VN IL+ L      RLA PGEF+ R
Sbjct: 61  TGEPIDEVLISVFREPHSYTGEDVIEISCHGNPNLVNRILQTLLLS--CRLAKPGEFTLR 118

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGK+DL +AE++ DLI ++     + ++  + G LS    + + ++T +R   E  +
Sbjct: 119 AFLNGKMDLSQAEAVNDLIQAQANQAEKAALMQLKGFLSKYLQELLARITELRIRFELAI 178

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF++ +D+    S  +  ++L +        S G+ G  +R G KI + G  N GKSSLF
Sbjct: 179 DFAD-QDLPLPDSNALYQELLDIIKTAEELKSTGEQGRRLREGIKICLTGAPNVGKSSLF 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL +++ AIVT  PGTTRD L   L L G+ + I DTAG+RE  D +EKEGI +++  +
Sbjct: 238 NALLQQNRAIVTPHPGTTRDYLEEYLSLNGFPIVIYDTAGLREFPDDIEKEGITKSYELM 297

Query: 297 ENADLILLLKEIN-------------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY--DH 341
           + +DLIL L E               S   I    +   + + +K+DL    T +     
Sbjct: 298 QESDLILYLVEATTVTNPNLQFSDLLSPSSIPPDLHSKTLVVFSKADLMQENTPQIFPGI 357

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DC 400
             S  T  GL++L + I   L    +     I  + RHL  LS+ ++ L  A    K + 
Sbjct: 358 YCSVITENGLKDLTDAISKRLMLNTELPNKPIIINNRHLVALSKCLQSLHRAKQCLKENQ 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G + IA  L  AS +L +I G +  + LLD IFS+FCIGK
Sbjct: 418 GYEFIAFELISASNALEEILGVITTDDLLDKIFSEFCIGK 457


>gi|90194074|gb|ABD92598.1| ThdF [Avibacterium gallinarum]
          Length = 435

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 148/438 (33%), Positives = 240/438 (54%), Gaps = 20/438 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   QV E +   K   PR A+   F  +DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRVSGPLAQQVAEAVLG-KNLKPRVANYLPFKDIDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ + ++  +RLA PGEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQIILDLLLKRILQVKGVRLARPGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINQLVDDVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   +++  ++ K G I+R G K+VI G  NAGKSSL NALA ++ AIVTDI G
Sbjct: 179 EAKLREIIAQLAAVRAEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD I+L+ +    +
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGIRRAWDEIEQADRIILMLDSTDSE 298

Query: 313 E----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELIN 356
           E             P NI    +  K+DL       S    +    +S+ T  G++ L  
Sbjct: 299 ENLAQVRSEFLAKLPNNIPLTIVRNKADLSGEAETISEQNGQTSISLSAKTQVGVDLLRE 358

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVS 415
            +K  +            + +RHL  L Q   +L+   +   +    +++AE LR+    
Sbjct: 359 HLKQAM-GYNTSAEGGFLARRRHLEALEQADIHLQAGLIQLTEFYAGELLAEELRMVQNH 417

Query: 416 LGKITGCVDVEQLLDIIF 433
           L +ITG    + LL  IF
Sbjct: 418 LSEITGQFTSDDLLGNIF 435


>gi|325265449|ref|ZP_08132172.1| tRNA modification GTPase TrmE [Clostridium sp. D5]
 gi|324029307|gb|EGB90599.1| tRNA modification GTPase TrmE [Clostridium sp. D5]
          Length = 470

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/470 (33%), Positives = 232/470 (49%), Gaps = 36/470 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRIL 61
           K+TI A+STG   S I I+R+SG   FQV + I   K       S    +G     G  +
Sbjct: 3   KDTIAAISTGMSNSGIGIVRISGAEAFQVIDRIYTGKDRLLEAKSHTIHYGFIKDGGETV 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+++   P +FTGED+ E + HGG  VV  +LE + K    R A PGEF++RAF NG
Sbjct: 63  DEVLVMLMRGPRTFTGEDTVEINCHGGTYVVKRVLETVIK-NGARPAEPGEFTKRAFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++  +I+S+ E   + S+  + G +        +K+ +  +FIE  LD  E 
Sbjct: 122 KMDLSQAEAVIGVITSKNEYALQCSISQLKGSVKKKIEDIRNKIVYHTAFIETALDDPEH 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            ++  +  + + + I  +  +I   I     G I++ G + VI G  NAGKSSL N LA 
Sbjct: 182 IEIDGY-GETLKSVIDDILVEIGKLIESSDSGRIMKEGIQTVIAGKPNAGKSSLLNVLAG 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRD L   + L G  + + DTAGIRETDDI+EK G+ +    V+NADL
Sbjct: 241 RERAIVTDIEGTTRDALEEQIQLNGLTLNMVDTAGIRETDDIIEKMGVDKARDYVKNADL 300

Query: 302 ILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY---------------- 339
           I+ + +       N +  I        I +  KSDL +  T+E                 
Sbjct: 301 IIYVADASRPLDKNDEDIIRLTAGKKCIILLNKSDLETVITKEILQNKIKNILNETENEG 360

Query: 340 -------DHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                     IS+   +GL+E  + + ++ L  +         ++ R    L      L 
Sbjct: 361 INSIYIPMIDISAKEEQGLQEFEDILNTMFLKGEVSFNDEVYITNIRQKAALRDACESLN 420

Query: 392 MASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 +     D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 421 KVIESIDNQMPEDFFSIDLMDAYESLGSITGETIGEDLVNEIFSKFCMGK 470


>gi|313205615|ref|YP_004044792.1| tRNA modification GTPase trme [Riemerella anatipestifer DSM 15868]
 gi|312444931|gb|ADQ81286.1| tRNA modification GTPase trmE [Riemerella anatipestifer DSM 15868]
 gi|325334957|gb|ADZ11231.1| Predicted GTPase [Riemerella anatipestifer RA-GD]
          Length = 463

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/466 (32%), Positives = 247/466 (53%), Gaps = 32/466 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDGR-I 60
           ++++TI A++T     AI IIR+SG +   +   I K K        +L Y F + G  +
Sbjct: 2   NQQDTICALATANGVGAIGIIRVSGDNSINITNTIFKGKDLTKVDSHTLHYGFIVQGEEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ ++ +F +P+SFT EDS E   HG   +   IL+ L      R+A  GEFS RAF N
Sbjct: 62  IDEVMISIFKAPKSFTTEDSVEISFHGSPFIGKRILDLLI-ANGCRMAKAGEFSMRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ADLI+SE+E  R++++  + G +S+      + L +  S IE +LDF+E
Sbjct: 121 GRIDLSQAESIADLIASESEAARKVALNQLKGGISNEISILRNDLLNFTSLIELELDFAE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            EDV+     E+   +  LK+ +   +   + G  ++NG ++ I+G  NAGKS+L NAL 
Sbjct: 181 -EDVEFADRTELTQLLQKLKSKLGGLLESFQYGNAVKNGVQVAIIGKPNAGKSTLLNALL 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIV+DI GTTRD +   L + G+  +  DTAGIR+T D VE  G+++   ++  AD
Sbjct: 240 KEERAIVSDIAGTTRDTIEEVLHIGGHAFRFIDTAGIRDTADRVESIGVEKAKEKINTAD 299

Query: 301 LILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHL---------- 342
           ++L L +I                  ++  I +  K D  S  TE  D            
Sbjct: 300 ILLYLFDIKDSTPNEIINFITSLERPDLKVILLQNKID-SSNETEINDFWKQLKEVLVPN 358

Query: 343 -------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                  IS+   + +E L N++ S +  + K    +I +++RH   L +++  ++    
Sbjct: 359 FTQTILGISAKEEKNIEILKNELVSYI-EELKTSESTIITNQRHQEALQKSLLSVQKVEE 417

Query: 396 NEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +    +++A  LR A   LG+I+G    +++L  IF KFCIGK
Sbjct: 418 AITNRISTELLAYELRAAMEYLGEISGEFTNDEVLGNIFGKFCIGK 463


>gi|260797062|ref|XP_002593523.1| hypothetical protein BRAFLDRAFT_125232 [Branchiostoma floridae]
 gi|229278748|gb|EEN49534.1| hypothetical protein BRAFLDRAFT_125232 [Branchiostoma floridae]
          Length = 517

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 175/491 (35%), Positives = 265/491 (53%), Gaps = 59/491 (12%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGRILDKGL 65
           TIFA+S+G     ++++R++GP        + ++   P  R+A+L+  +   G  LD+GL
Sbjct: 29  TIFALSSGHGKCGVAVVRVTGPHASSAVRLLTRRPVLPAVRRAALKRLYDSTGEPLDRGL 88

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I FP P SFTGEDS EFHVHGG +VV  +L+ L  M  LR A  GEF++RAF+NGK+DL
Sbjct: 89  VIWFPGPHSFTGEDSCEFHVHGGPSVVTSLLQALGNMEGLRPAEAGEFTKRAFQNGKLDL 148

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E LADLI +ETE QR+ ++  M G+LS LY  W  +L    + +EA +DFSE+E+++
Sbjct: 149 TEVEGLADLIHAETEAQRKQALRQMEGDLSRLYSDWSRRLLKCVANVEAYIDFSEDENIE 208

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                +V  ++  L+ ++  H+S G+ GE +R+G ++ ILG  N GKSSL NA+ ++  A
Sbjct: 209 AGVLDDVEREVCQLREELERHLSDGRRGERLRSGVQVAILGKPNVGKSSLLNAVCQRPAA 268

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT + GTTRDV+   ++L GY V +SDTAG+RET+DIVE+EG++R     + AD+ +L+
Sbjct: 269 IVTPVAGTTRDVVESAVNLGGYPVLLSDTAGLRETEDIVEQEGVRRARQRAQQADISVLV 328

Query: 306 KEINS---------------------------KKEISFPKNIDFI-------FIGTKSDL 331
            +                               +  +F  N            +  KSDL
Sbjct: 329 LDATDVMAAVSRQPGHYLTLQQYVQDHIPDLGLQGTTFDTNDGTTNPTDSYLIVVNKSDL 388

Query: 332 YST-------------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                                   +    ++S  TGEG++  +  ++  +          
Sbjct: 389 VDAGGSLGTLLASSELATEGDGARDGDVCVMSCLTGEGMDGFLQLLQLKVKLMCGNPLAG 448

Query: 373 IP--SHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLL 429
            P  +  RH  HL+  ++ L   A + E+D  L + AE LR     LGKITG +  E++L
Sbjct: 449 NPSFTQARHRAHLTACLQALTSYAGMCERD--LVLAAEELRTGLRHLGKITGKMGAEEIL 506

Query: 430 DIIFSKFCIGK 440
           D+IF  FCIGK
Sbjct: 507 DVIFRDFCIGK 517


>gi|323486760|ref|ZP_08092079.1| hypothetical protein HMPREF9474_03830 [Clostridium symbiosum
           WAL-14163]
 gi|323399899|gb|EGA92278.1| hypothetical protein HMPREF9474_03830 [Clostridium symbiosum
           WAL-14163]
          Length = 462

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 149/459 (32%), Positives = 241/459 (52%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-----KKKPFPRKASLRYFFGLDG 58
             +TI A++T    S I IIR+SG   F + + I +     KK    +  ++ Y    DG
Sbjct: 6   TSDTIAAIATALTNSGIGIIRVSGNEAFDIVDRIFRPKNKRKKLKEEKTYTVHYGHIQDG 65

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ L I+   P S+T ED+ E   HGG+ V+  ILE + K    R+A PGEF++RA
Sbjct: 66  DEIIDEVLAIIMRGPHSYTAEDTVEIDCHGGVLVMKKILETVIK-YGARMAEPGEFTKRA 124

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+S+     + S+  +SG +S    +  +KL    +FIE+ LD
Sbjct: 125 FLNGRIDLSQAEAVIDVINSKNNYALKSSVSQLSGSMSKKVKELREKLLFEIAFIESALD 184

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             E   +  +  +++   +  ++ +++  IS    G ++  G + VILG  NAGKSSL N
Sbjct: 185 DPEHISLDGYP-EKLKVTVNDMQEELNRAISTFDSGRVLSEGIRTVILGKPNAGKSSLMN 243

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ AIVTDI GTTRD L  ++ L G  + I DTAGIRET+D+VEK G+ +     +
Sbjct: 244 VLVGEERAIVTDIAGTTRDTLEENIRLHGISLNIVDTAGIRETEDVVEKIGVDKARANAD 303

Query: 298 NADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-------- 343
           +ADL++ + + +   +      ++  +    I +  K+DL    T E             
Sbjct: 304 DADLLIYVVDGSCPLDENDYQIMNLIEGRKSIVLLNKTDLEMVLTPEEIKEKTGKEVVAV 363

Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S+    G++ L  KIK + LS +       + ++ RH   +S+ ++ L +     E    
Sbjct: 364 SAKEQRGIDLLEEKIKELFLSGEIDFNDEVMITNVRHKTAMSEALKSLSLVKQSIEDQMP 423

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  + +L  A   LG I G    + L++ IF+KFC+GK
Sbjct: 424 EDFYSIDLMNAYEQLGTIIGESLEDDLVNEIFNKFCMGK 462


>gi|223937602|ref|ZP_03629505.1| tRNA modification GTPase TrmE [bacterium Ellin514]
 gi|223893765|gb|EEF60223.1| tRNA modification GTPase TrmE [bacterium Ellin514]
          Length = 457

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 136/456 (29%), Positives = 230/456 (50%), Gaps = 22/456 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEF----ICKKKKPFPRKASLRYFFGL---D 57
            +TI A++T      +++IRLSG     + +     + K         +    +G     
Sbjct: 4   DDTIAAIATPLGEGGLAVIRLSGREALSIADKSFQPVGKSSINPSAAPTHTIHYGRIIRH 63

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+ +D+ LL V  +P + T ED  E   HGG+     +L+ + +    RLA PGEF++RA
Sbjct: 64  GQSVDEVLLAVMRAPRTLTREDVVEITCHGGLLPAKLVLDTVLE-NGARLAEPGEFTKRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ADLI + TE+    + E ++G+LS       D +    + +EA +D
Sbjct: 123 FLNGRIDLAQAEAVADLIHARTELALTAANEQLAGKLSQRINALRDDMVKTLAHVEAHID 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F + ED+   +  +++  +      +   +     G+I+R G +  I+G  NAGKSSL N
Sbjct: 183 FPD-EDISPDTKVKLIGRLERGLEFMEELLRTSNEGQILRRGIRAAIIGRPNAGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+ IPGTTRD +    ++ G  +   DTAG+RE  D +E EGI+R+   + 
Sbjct: 242 QLLGRDRAIVSHIPGTTRDTIEETANVRGLPIVFVDTAGLREAGDEIEVEGIRRSRETLS 301

Query: 298 NADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTYTEEYDHL-----ISSF 346
            A+ IL + + +    ++         +   I +  K DL +    +         +   
Sbjct: 302 KAEFILHVLDASEPLTMADENYLAEFSDKKRILVRNKMDLPAKLDLQTGIHAPVVEVCCL 361

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDI 404
           +G+G+E L + IKS++     +     +  + RH   L++     +      K D  L++
Sbjct: 362 SGKGIETLKDAIKSMVWAGEIRAEMLQVMINSRHQEALNRARSATQRTITALKGDETLEL 421

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A +LR+A  ++G+I G    E +LD IFS+FCIGK
Sbjct: 422 VAMDLRIAVNAVGEIVGKTTTEDILDSIFSQFCIGK 457


>gi|297621993|ref|YP_003710130.1| tRNA modification GTPase TrmE [Waddlia chondrophila WSU 86-1044]
 gi|297377294|gb|ADI39124.1| tRNA modification GTPase TrmE [Waddlia chondrophila WSU 86-1044]
          Length = 452

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 140/454 (30%), Positives = 231/454 (50%), Gaps = 16/454 (3%)

Query: 1   MNHEKE-TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DG 58
           M    + TI A++T      +++IR+SG     +   I        +  ++RY      G
Sbjct: 1   MKFTLDHTIAAIATPPGEGGVAVIRISGKESIPIANAIFSGSIDSMKSHTVRYGHIRCQG 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D  LL+V  +P S+TGED+ E H HGG  +   +L+ +      + A PGEF+ RAF
Sbjct: 61  EHIDDVLLLVMRAPRSYTGEDTVEIHCHGGSLITRRVLDTVL-AAGAKQALPGEFTFRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            + K+DL +AE++ +LI ++ E     S + + G LS     +  +L  I + +EA +DF
Sbjct: 120 IHNKLDLSQAEAVQELIGAKNERALDASKQQLQGRLSDKILSFQSQLNSIAAILEAWVDF 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            + E ++  S +EV +D+  +  ++    S    G+I+ +G  + ++G  N GKSSL NA
Sbjct: 180 PD-EGLEFASFEEVCSDLESVIGEMKELKSTYHDGKILHDGISLCLIGRPNVGKSSLMNA 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  K+ AIVTD PGTTRD++   L + G   ++ DTAGIRE  + +E+EGI+R+   +E 
Sbjct: 239 LLDKERAIVTDTPGTTRDIVEDSLRINGLNFRLIDTAGIREGAETIEQEGIRRSKEALEK 298

Query: 299 ADLILLLKE------INSKKEISFPKNIDFIFIGTKSDL----YSTYTEEYDHLISSFTG 348
           ADL+LL+ +         ++ I        I +  K DL           Y   IS+   
Sbjct: 299 ADLVLLVLDAKRGVTAEDEQLIDLVPKGKTIAVWNKIDLPHDEAPQLGIPYIVPISAKEK 358

Query: 349 EGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIA 406
           +GL++L  +I  ++  +        + ++ RH   LS  +   E      + D   + +A
Sbjct: 359 KGLKQLHEQIDRVVWEHGPPSKEEILITNVRHKESLSDAIAACEKVLEGLRSDISPEFVA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++R    +LGK+ G    E +L  IFSKFC+GK
Sbjct: 419 FDMRDCLENLGKVIGTDVTEDILSAIFSKFCVGK 452


>gi|315925604|ref|ZP_07921814.1| tRNA modification GTPase TrmE [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621145|gb|EFV01116.1| tRNA modification GTPase TrmE [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 457

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 144/455 (31%), Positives = 247/455 (54%), Gaps = 20/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP------FPRKASLRYFFGLD 57
           + + I A++T +    + I+R+SG     V + + +                  + +   
Sbjct: 5   QDDVIAAIATPSGVGGVGIVRISGKDAIAVADRVYQNASDQQLASFETHTIHYGHCYDAQ 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+ +D+ L+ +  +P S+T ED  E + HGG   ++ +L+ + +    RLA+PGEF+RRA
Sbjct: 65  GKRIDEVLVSIMKAPRSYTAEDVVEINCHGGPVALHAVLDAVIRA-GARLADPGEFTRRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE+++D+I ++T +    S+  +SG LS  Y     +L H+ +FI+A +D
Sbjct: 124 FVNGRIDLTQAEAVSDIIEAKTAIGLAYSVNQLSGGLSKKYQAVDAELLHLMTFIDAAID 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D++  +   +   I  L   + + +   ++G+I RNG   VILG  N GKSSL N
Sbjct: 184 YPEY-DIETVTGDTLRRSIDGLIVSVDALLDSAQMGKIYRNGVDTVILGEPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L ++D A+VTDIPGTTRDV+   +++EG    I DTAGIRETDD+VEK G++++   ++
Sbjct: 243 KLIREDKALVTDIPGTTRDVVEAYINIEGIPFHIIDTAGIRETDDVVEKLGVEKSKQMMD 302

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTY---TEEYDHLISSFTG 348
            A+LIL++ ++      +    I+  ++  +I I  K DL        +  +  +S  T 
Sbjct: 303 RAELILMMTDVSRETSEDEDTLITAFQDKPYIRIYNKIDLKDEVLTDLKPNEIALSIKTE 362

Query: 349 EGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDII 405
            GL+ L  ++ ++++     K     I S+ RH+  L Q    L  A         +D++
Sbjct: 363 TGLDALRRQMVAMVTGNQTAKAADDVIVSNLRHVNLLRQVRENLTNALNGLSIGMSVDMV 422

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A +L  A  +L +ITG    + ++D IF+ FC+GK
Sbjct: 423 AIDLEEALENLRRITGQSLGDDIIDQIFANFCLGK 457


>gi|332983463|ref|YP_004464904.1| tRNA modification GTPase trmE [Mahella australiensis 50-1 BON]
 gi|332701141|gb|AEE98082.1| tRNA modification GTPase trmE [Mahella australiensis 50-1 BON]
          Length = 460

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/458 (33%), Positives = 237/458 (51%), Gaps = 26/458 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC------KKKKPFPRKASLRYFFGLD-GR 59
           TI A+ST      I I+RLSGP    + + I       K K    R     +    D GR
Sbjct: 5   TIAAISTPIGEGGIGIVRLSGPKAIDIADSIFINIKGRKIKDAPNRSILYGHIKDPDTGR 64

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ L+ +   P S+TGED  E   HGG+  +  +LE +A      LA PGEF++RAF 
Sbjct: 65  DIDEVLVSIMRGPHSYTGEDVVEISGHGGMLPLRRVLE-VAVREGAVLAQPGEFTKRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AES+ D+IS++T++    S+  + G+LS    +    L  + + IEA +D+ 
Sbjct: 124 NGRIDLAQAESVMDIISAKTDVALTSSVMQLEGKLSRSIEKIRVALLDVLTHIEALIDYP 183

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV   S+K++   +    + I   ++    G IIR G K  I+G  N GKSSL NAL
Sbjct: 184 E-EDVDELSTKDMRKKLADEYDSIEKLLATADTGRIIREGLKTAIIGRPNVGKSSLLNAL 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K D AIVTDIPGTTRD++   +++ G  + I DTAGIRE  D +E+ GI+RT   V  A
Sbjct: 243 LKADRAIVTDIPGTTRDIIEDYVNVNGIALNIIDTAGIREAADEIERIGIERTRDTVYRA 302

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTE---------EYDHLIS 344
           DL++ + +       + +   S   +   I +  KSDL    TE              +S
Sbjct: 303 DLVIFVLDGSQPLHQDDRAIASLISSKKAIVVLNKSDLGRVVTEAEVNAVLPDAPVIEMS 362

Query: 345 SFTGEGLEELINKIKSILSN-KFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGL 402
              G GL++L   I  ++ + K      ++ ++ RH   L      L+      +    +
Sbjct: 363 LKEGYGLDDLEGTITDMVYHGKAIASDEAMITNVRHKEALISAAEALQRCLFSIDDGMPM 422

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+++ +L+ A  ++G I+G    ++++D IF +FC+GK
Sbjct: 423 DLVSIDLKDAIEAMGLISGKTVEDEVVDRIFERFCVGK 460


>gi|261378121|ref|ZP_05982694.1| tRNA modification GTPase TrmE [Neisseria cinerea ATCC 14685]
 gi|269145579|gb|EEZ71997.1| tRNA modification GTPase TrmE [Neisseria cinerea ATCC 14685]
          Length = 448

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 165/453 (36%), Positives = 256/453 (56%), Gaps = 18/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+ +  TI AV+T      + ++R+SG +   + + +C  K P PR A+   F  ++G  
Sbjct: 1   MSDKDSTIAAVATAPGRGGVGVVRVSGKNLLPMAQALCG-KTPLPRVATYADFKDVNGEA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D GLL+ F +P SFTGED  E   HGG  V+  +L    ++   RLA PGEF++RAF N
Sbjct: 60  IDNGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE +ADLI + +    RL++  + G+ S      +D L  +R  +EA LDF E
Sbjct: 119 DKLDLAQAEGVADLIDASSRTAARLALRSLKGDFSRRIHGLVDDLVTLRMLVEATLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  +   ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 179 -EDIDFLEAADARGKLEGLRRSVDEVLANARQGAILREGMNVVLVGAPNVGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             +VAIVTDI GTTRD +   + ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297

Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFT 347
           + L+L +    +N K  +   + P ++  I I +KSDL++     ++        +S+ T
Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHTGAAVAFETGADTVIPLSAKT 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G GL+ L   +   +  +  +      +  RHL  L      LE+A+L      ++++AE
Sbjct: 358 GAGLDVLRQTLLREVGWQ-GEGEGLFLARARHLNALKAAQGELELAALCGNGQ-IELLAE 415

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRLA V+ G+ITG    + LL +IFS+FCIGK
Sbjct: 416 HLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448


>gi|328793826|ref|XP_001121197.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
           [Apis mellifera]
          Length = 488

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 175/457 (38%), Positives = 255/457 (55%), Gaps = 24/457 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGL 65
           TI+A+S+G     +++IR+SGP      + + K  K  PR A L+  +  +   +LD+GL
Sbjct: 33  TIYALSSGYGKCGVAVIRISGPKALIALKRMTKISKLIPRMALLKKIYDPETKEMLDRGL 92

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGED  EFHVHGG AV+  IL  LAK+   +LA PGEF+RRAF NGK+DL
Sbjct: 93  CLWFPGPNSFTGEDCIEFHVHGGPAVITSILNALAKLH-FQLAFPGEFTRRAFLNGKLDL 151

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE + DLI +ETE QR+ +     G L  +Y  W   L +I + +EA +DF+EE +V 
Sbjct: 152 TEAEGIGDLIEAETEKQRKQASNQTIGSLYHIYESWRIILLNILANLEAYIDFAEEHNVT 211

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +   ++   +I  L   I  H+S  + GEI+R+G  + ILG  N GKSS  N L+KK+ A
Sbjct: 212 SNILEDTKINIQKLYVKIQQHLSDERKGEILRSGIHVAILGKPNVGKSSFLNLLSKKNAA 271

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILL 304
           IVT +PGTTRD++ + +D+ GY + ++DTAGIR   ++ +E EGIK+T    + AD I+ 
Sbjct: 272 IVTSLPGTTRDIIELTIDICGYPMILADTAGIRNNPENEIEIEGIKKTKEYSKKADFIIC 331

Query: 305 LKEINSKKEISFP------------KNIDFIFIGTKSDL-----YSTYTEEYDHLISSFT 347
           +    +  + S                   + I  K DL       ++ ++    IS  T
Sbjct: 332 IISAENNVKTSLEDFLKQYKNFLEIDKKRVLLILNKIDLIKEDEIESWRKQNVIPISCKT 391

Query: 348 GEGLEELINKIKSILSNKFKKL--PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
            EGL+ELIN +                + SH R+  HL   + YL+      K    D+ 
Sbjct: 392 QEGLKELINALGQCFEEICGNPCKESPVISHARYRNHLLHVLDYLKYYLEKTKIPNYDMA 451

Query: 406 A--ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +++R A+  LGKITG ++ E++LDIIF  FCIGK
Sbjct: 452 ISLQDIRNAARELGKITGSINNEEVLDIIFKNFCIGK 488


>gi|238028966|ref|YP_002913197.1| tRNA modification GTPase TrmE [Burkholderia glumae BGR1]
 gi|237878160|gb|ACR30493.1| TRNA modification GTPase TrmE [Burkholderia glumae BGR1]
          Length = 472

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 235/473 (49%), Gaps = 35/473 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T      I ++R+S    G S  +        +    R AS   F   
Sbjct: 2   LTTDSDPIVAIATAPGRGGIGVVRISFGRAGASAAEALMQAVCGQLLAARHASYVPFLDG 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   +RLA PGEF
Sbjct: 62  AGEALDRGIALNFPAPNSYTGEHVLELQGHGGPIVLQLLLQRCLDAGRGHGVRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDVHALVDDVIGLRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPE-EEIDFLEAADARGKLARIRERLARVLGDARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIVDTAGLRETEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDLYSTYT---------- 336
            E+E AD++L L +               FP  +  + +  K+DL               
Sbjct: 301 GEIERADVVLHLLDAREGLGADDRAIAGRFPAGVPVVRVFNKTDLTDAPPAVAHLGGHAQ 360

Query: 337 -------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                  +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +
Sbjct: 361 ADAAGGLDLSEVRLSAKRGDGIDLLRAELLRIAGWQAG-AESVYLARERHLIALRAAQAH 419

Query: 390 LEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L  A+   ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 LAQAAGHADQNAEALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 472


>gi|195999388|ref|XP_002109562.1| hypothetical protein TRIADDRAFT_53723 [Trichoplax adhaerens]
 gi|190587686|gb|EDV27728.1| hypothetical protein TRIADDRAFT_53723 [Trichoplax adhaerens]
          Length = 494

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 183/476 (38%), Positives = 266/476 (55%), Gaps = 43/476 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64
           T+FAVS+G   S +++IR++GP   +  + + K    P PR ASLR  +    G ++DKG
Sbjct: 20  TVFAVSSGHGVSGVAVIRVTGPETSEAVKLMTKSDNLPKPRYASLRKIYQPSTGDLVDKG 79

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGED AEF VHGG AVV GIL  L+++  L  A  G+F+RRAFEN K+D
Sbjct: 80  LILWFPGPNSFTGEDLAEFQVHGGSAVVEGILTSLSEIDGLYPAMAGDFTRRAFENEKLD 139

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI ++TE QR+ ++  M G LS LY  W   L    + IEA +DFSE + +
Sbjct: 140 LTEVEGLADLIHAQTEAQRKQALRQMDGHLSQLYKIWSKTLLKSVADIEATIDFSE-DVI 198

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           ++     V N +  L  ++ +H+  G+ GE +R+G  +VI G  N GKSSL N L ++  
Sbjct: 199 EDGILTNVKNSVNKLAKEVRNHLEDGRRGEKLRSGVNVVIAGPPNVGKSSLLNLLCQRPA 258

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+ + GTTRDV+   +++ GY V  SDTAGIR++ D VEKEGIKR   ++  AD +L+
Sbjct: 259 AIVSPLEGTTRDVVETAVNIGGYPVLFSDTAGIRQSIDPVEKEGIKRAKSKISAADFVLI 318

Query: 305 LKE-----------------------INSKKEISFPKNIDFIFIGTKSDLYSTY------ 335
           + +                       ++      F +NI+++ I  K+DL +        
Sbjct: 319 VHDLSKYKHVDIDGLLESPLRMLNTNVDESTSADFDENIEYLMILNKADLITNNLAVQMK 378

Query: 336 -----TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVR 388
                      +IS  TG+G+E+ IN +   + +         P  +  RH +HL + + 
Sbjct: 379 EAFNTKGVNACIISCETGDGIEDFINILSQKMKDICGDPVVGNPSITQARHRFHLREALN 438

Query: 389 YLE----MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LE    MA    +D  L + AE LR+A   LG+ITG +  E +LD+IF  FCIGK
Sbjct: 439 SLEIYLRMAHDGFEDHDLVLGAEELRIALRELGRITGNIGTEDILDVIFRDFCIGK 494


>gi|83953076|ref|ZP_00961798.1| tRNA modification GTPase [Sulfitobacter sp. NAS-14.1]
 gi|83842044|gb|EAP81212.1| tRNA modification GTPase [Sulfitobacter sp. NAS-14.1]
          Length = 428

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 177/437 (40%), Positives = 252/437 (57%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA +T    + + +IR+SGP  F + E I +   P PR A++R     DG+++D+ L
Sbjct: 2   DTIFAQATAQGRAGVCVIRISGPQAFFIAETIAQP-LPAPRMAAVRAISDADGQVIDRAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F SP SFTGED+ E H+HG IAVV  +L  L+     RLA PGEF+RRA ENGK+DL
Sbjct: 61  VLTFESPNSFTGEDTVELHLHGSIAVVRAVLALLSGFDGTRLAEPGEFTRRAMENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E L DLI +ETE QR+ ++  +SG L      W +KL    + +E  +DF++ EDV 
Sbjct: 121 TQVEGLGDLIEAETEAQRKQALRVLSGHLGQKVDIWREKLIRAAALLEVTIDFAD-EDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV   +  +  DI + I+     E IR G+++ I+G  NAGKS+L NALA +D A
Sbjct: 180 VDVSPEVTELLNAVNIDILAEIAGTHTAERIRTGFEVAIIGRPNAGKSTLLNALAGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + + GTTRDV+ + +DL G  V + DTAG+RE  D VE  GI R     E ADL + L
Sbjct: 240 ITSAVAGTTRDVIEVRMDLGGLPVTLLDTAGLREGADEVEAIGIDRAKTRGEQADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E    +E+      D I +  K DL  +     D  IS  TG+G+ +LI +I++IL   
Sbjct: 300 SE--EGEELPVAATADDIVLRPKGDLRDS----ADDAISGVTGQGVPQLIERIQTIL--G 351

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCV 423
            + L   + +H+RH   L ++   L  A L         DI +E LR +  +L  + G +
Sbjct: 352 ARSLNAGLATHERHRVALQKSAEGLAAAMLVLDHGPDQYDIASEELRHSIRALEALVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LLD+IFS FC+GK
Sbjct: 412 DVENLLDVIFSSFCLGK 428


>gi|295108622|emb|CBL22575.1| tRNA modification GTPase trmE [Ruminococcus obeum A2-162]
          Length = 457

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 149/456 (32%), Positives = 234/456 (51%), Gaps = 24/456 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-----KASLRYFFGLDGR-I 60
           TI A+ST    S I I+R+SG     V   I + K            ++ Y F  DG  +
Sbjct: 4   TIAAISTAMSASGIGIVRISGEKAMDVIANIYRSKNGKKDIREVGSHTIHYGFIYDGEEV 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+++   P ++TGED+ E   HGG+  +  +LE + K     +A PGEF++RAF N
Sbjct: 64  VDEVLVMIMKGPHTYTGEDTVEIDCHGGVYAMKRVLETVLK-NGAIIAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ D+I ++  M  + S+E + G +     +   +L H  ++IE  LD  E
Sbjct: 123 GRLDLSQAEAVMDVIQAKNSMALKSSVEQLKGSVQKAIREIRARLLHQIAYIETALDDPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D+  +  +E+L  +     +IS+ +     G +I+ G K VILG  NAGKSSL N L 
Sbjct: 183 HFDLTGYP-QELLEIVEKESENISNLLKTADDGRMIQEGIKTVILGKPNAGKSSLLNFLV 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVT+I GTTRD+L   + L G  +++ DTAGIRET+DIVEK G+ +     E+AD
Sbjct: 242 GEDRAIVTEIAGTTRDILEEYISLNGITLRMIDTAGIRETEDIVEKIGVGKAKQMAEDAD 301

Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISSF 346
           LIL + +       N ++ +        I I  K+DL +  + E            +S  
Sbjct: 302 LILYVVDSSLPLDENDREIMELLSGRKSIVIYNKTDLEAAVSIEELKEKTGSPVIPVSVV 361

Query: 347 TGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDI 404
              GL +L ++I+ +  +           ++ RH   L +    L++           D 
Sbjct: 362 EETGLRQLEDEIRRMFFHGELSFNDEVYITNARHKAALEEAKESLKLVKESINMGMAEDF 421

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +L  A  SLG+I G    E L++ IFSKFC+GK
Sbjct: 422 FSIDLMSAYESLGRIVGESVGEDLVNEIFSKFCVGK 457


>gi|89897893|ref|YP_515003.1| tRNA modification GTPase TrmE [Chlamydophila felis Fe/C-56]
 gi|123483931|sp|Q256D0|MNME_CHLFF RecName: Full=tRNA modification GTPase mnmE
 gi|89331265|dbj|BAE80858.1| tRNA modification GTPase trmE [Chlamydophila felis Fe/C-56]
          Length = 443

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 160/449 (35%), Positives = 231/449 (51%), Gaps = 20/449 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LDGRI 60
           + +TI A++T     +I+I+R+SGP   Q+ + I     P P  AS     G     GR 
Sbjct: 3   KNDTIAAIATPPGEGSIAIVRVSGPEAIQITDKIFSG--PVPSFASHTAHLGTASHHGRQ 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL++  +P SFTGED  E   HGG    + ILE L      R A PGEFS+RAF N
Sbjct: 61  IDQVLLLIMRAPRSFTGEDVVELQCHGGYFSCSQILEALV-SEGARPALPGEFSQRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL++AE++ +LI+++      ++     G  S    +    +    +FIE   DF E
Sbjct: 120 GKIDLIQAEAIQNLIAADNLDAFHIAQNHFQGHFSQRVQKISSLIIESLAFIEVLADFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE       ++ LN+ L +  D+   IS    G+ +  G  IV+ GH NAGKSSL NAL 
Sbjct: 180 EEQPDMEVPEKRLNEALVIIEDL---ISSFDEGQRLAQGTSIVLAGHPNAGKSSLLNALT 236

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDIPGTTRD+L     L+G  +++ D+AG RETD+ VE+EGI+R    ++ A+
Sbjct: 237 NRNRAIVTDIPGTTRDILEESWTLQGKRIRLIDSAGQRETDNPVEQEGIERAISAMKQAE 296

Query: 301 LILLLKEINSK----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI---SSFTGEGLEE 353
            IL + +         EI F K    + +  KSDL S    +        S+ TG+G+ E
Sbjct: 297 GILWVMDATQPPPPLPEILFQK--PSLLLWNKSDLASPPRIDTSLPQLAISAKTGDGILE 354

Query: 354 LINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRL 411
           L   I+  +   +  K         RH   L Q   YL  A          +++A  LR 
Sbjct: 355 LKQFIQKWIQKQQLGKNSKVFLVSARHHTILQQIRTYLLSAKEGLLSQLPPELVALELRQ 414

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  + G ++G    E +L  IFS+FCIGK
Sbjct: 415 ALQTTGNLSGSEINETILGEIFSRFCIGK 443


>gi|241767064|ref|ZP_04764843.1| tRNA modification GTPase TrmE [Acidovorax delafieldii 2AN]
 gi|241362387|gb|EER58354.1| tRNA modification GTPase TrmE [Acidovorax delafieldii 2AN]
          Length = 473

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/475 (32%), Positives = 237/475 (49%), Gaps = 38/475 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +   ++ I A++T     A+ I+R+SG     +   +C +    PR+A+   F    G  
Sbjct: 2   LARHQDPIVAIATAPGRGAVGIVRVSGKGLTALVWALCGRAL-KPREATYLPFRDARGEA 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM-------------PNLRL 107
           +D+GL + FP P S+TGED  E   HGG  V+  +L    +                LR+
Sbjct: 61  IDQGLALYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAAAPDAATGQPCLAGLRV 120

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEF+ RAF N KIDL +AE++ADLI + T    R +   ++G  S+      D L H
Sbjct: 121 AQPGEFTERAFLNDKIDLAQAEAIADLIDASTAAAARSASRSLTGAFSAEIHGLRDALIH 180

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA LDF E E++      +    +  L++ ++  + + + G ++R G K+VI G 
Sbjct: 181 LRMLVEATLDFPE-EEIDFLRKADARGQLSNLEHTLAKVMQRAQQGALLREGIKVVIAGQ 239

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R++ D VE+ 
Sbjct: 240 PNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSVDEVERI 299

Query: 288 GIKRTFLEVENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLY 332
           GI R + E+  AD +L L +               I        P  +  I +  K D  
Sbjct: 300 GIARAWDEIAAADAVLFLHDLARWDCADYRAADAAIEGALADKLPTTVPVIDVWNKVDSV 359

Query: 333 STYT-----EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
           S  T     +     +S+ TG+GLE L + +  +   +         +  RH+  L    
Sbjct: 360 SAATVPGAPQRPSVALSARTGQGLEALRSVLLQVAGWQ-SAPEGVYIARARHVQALQAVQ 418

Query: 388 RYL--EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L    A L+ +   LD++AE LRLA  +L  ITG    + LL +IFS FCIGK
Sbjct: 419 AHLAEAAAQLDARGPALDLLAEELRLAQNALNAITGEFSSDDLLGVIFSSFCIGK 473


>gi|197302262|ref|ZP_03167321.1| hypothetical protein RUMLAC_00989 [Ruminococcus lactaris ATCC
           29176]
 gi|197298693|gb|EDY33234.1| hypothetical protein RUMLAC_00989 [Ruminococcus lactaris ATCC
           29176]
          Length = 477

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/478 (31%), Positives = 233/478 (48%), Gaps = 43/478 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--DGR-I 60
           +K+TI A+STG   S I I+RLSG    ++ + + + K+      S    +G   DG   
Sbjct: 2   KKDTIAAISTGMTNSGIGIVRLSGNEALEIADKVYRGKEKITEVPSHTIHYGHIADGEET 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L++V   P +FTGED+ E + HGG  VV+ +LE + K    R A PGEF++RAF N
Sbjct: 62  VDEVLMMVMHGPRTFTGEDTVEINCHGGTYVVSRVLETVLK-YGARAAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ DLI+SE E   + S+  + G + S   +   K+ +  +FIE  LD  E
Sbjct: 121 GKMDLSQAEAVIDLINSENEYALQSSVSQLKGSVKSAINELRSKILYHTAFIETALDDPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              V  +  + +      +   +   I     G I++ G + VI+G  NAGKSSL N LA
Sbjct: 181 HISVDGY-GEILKGVSEEIIEKLQKLIDSADDGRIMKEGIQTVIVGKPNAGKSSLLNLLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTDI GTTRDVL   + L+G  + + DTAGIR+T+D+VEK G+ +     + AD
Sbjct: 240 GHERAIVTDIAGTTRDVLEEQIRLQGLNLNVIDTAGIRQTEDLVEKMGVDKAKEYAQKAD 299

Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-------------- 340
           LI+ + +       N +K +    +   I +  KSDL +   E                 
Sbjct: 300 LIIYVVDASKKLDENDEKIMELIYDKKAIILLNKSDLETVVDENLIREKISNLKKEAEQT 359

Query: 341 ----------------HLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHL 383
                             IS+   +G++   + +K + L            ++ R    L
Sbjct: 360 EKSEGQRYQVSENIPVIQISAKEEQGIQTFQDTLKEMFLRGNISFNEEIYITNARQKNAL 419

Query: 384 SQTVRYLEMASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +  ++      E     D  + +L  A   LG ITG    E L++ IFSKFC+GK
Sbjct: 420 VNALESMKKVIESIENGMPEDFYSIDLMDAYEELGNITGESMGEDLVNEIFSKFCMGK 477


>gi|261878772|ref|ZP_06005199.1| thiophene and furan oxidation protein ThdF [Prevotella bergensis
           DSM 17361]
 gi|270334631|gb|EFA45417.1| thiophene and furan oxidation protein ThdF [Prevotella bergensis
           DSM 17361]
          Length = 458

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 146/460 (31%), Positives = 232/460 (50%), Gaps = 22/460 (4%)

Query: 1   MN-HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-------SLRY 52
           MN +  +TI A++T     AI I+RLSGP    +   + +  K   + A           
Sbjct: 1   MNSYRNDTIVAIATPPG-GAIGILRLSGPEAISIITALFRPAKRGMKLADAQANTLHYGL 59

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
                G  +D  ++ V+ +P S+TGED  E   HG   ++   L  L      R A PGE
Sbjct: 60  LQSAQGEDIDDVIVSVYRAPHSYTGEDCIEISCHGSAYILKQALHALI-DAGARQAQPGE 118

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           +++RA+ NGK+DL +AE++ADLI+S  E   RL++  + G  SS   +   +L  + S I
Sbjct: 119 YTQRAYLNGKMDLSQAEAVADLIASTNEATHRLALSQLKGHFSSELSELRKQLLKMTSLI 178

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E +LDFS+ ED++     E+      + N I+S     + G  I+ G  + I+G +N GK
Sbjct: 179 ELELDFSDHEDIEFADRDELSCLASTISNHITSLAQSFETGNAIKKGIPVTIIGKTNVGK 238

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           S+L N L ++D AIV++I GTTRDV+   +D+ G   + +DTAG+R T+D +E+ GI+R 
Sbjct: 239 STLLNQLLREDKAIVSNIHGTTRDVIEDTIDIHGVTFRFTDTAGLRHTEDQIEQMGIERA 298

Query: 293 FLEVENADLILLLKE-INSKKEI----SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
           + ++E A +IL + +   ++ E+    S  +    I +  K+DL  T         SS  
Sbjct: 299 YQKMEQAVIILWVVDQPPTEPELNDICSRAQGKKVIVVQNKADLAHTPLPPLPDSFSSIA 358

Query: 348 -----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCG 401
                G+GL EL   I +            I ++ RH   L++    +         +  
Sbjct: 359 ISAKYGQGLHELEEAIYAAADIPHLDPNSVIVTNARHYEALTRAHTGISRVIEGLGLNLS 418

Query: 402 LDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
            D++AE+LR+    LG+IT G +   + L  IF  FCIGK
Sbjct: 419 GDLLAEDLRICLEELGEITGGTITSNETLAHIFKNFCIGK 458


>gi|189499228|ref|YP_001958698.1| tRNA modification GTPase TrmE [Chlorobium phaeobacteroides BS1]
 gi|189494669|gb|ACE03217.1| tRNA modification GTPase TrmE [Chlorobium phaeobacteroides BS1]
          Length = 473

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/467 (32%), Positives = 247/467 (52%), Gaps = 33/467 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR--------KASLRYFFG 55
           + E I AV+T     A++++R+SG   F + + +  K +             A     + 
Sbjct: 10  QGEPIAAVATPVGVGALAVVRMSGEGVFSIADRVFTKVRSPETSLADSPGYTAHFGKLYD 69

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            D R++D+ +++VF SP+SFT ED  E   HGG  V   +L+ L      RLA PGEF+R
Sbjct: 70  GD-RMIDEVIVLVFRSPDSFTVEDMVEITCHGGPVVTKHVLK-LLLDNGCRLAEPGEFTR 127

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDLL+AE++ ++I + +E   R ++  MSG LS   G   ++L H  + +E +
Sbjct: 128 RAFLNGRIDLLQAEAIGEMIHARSESAYRTAVNQMSGGLSGRLGTLREQLLHSCALLELE 187

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDFSE EDV+  S +E+   +  L+ ++   +   + G ++R G    I+G  NAGKS+L
Sbjct: 188 LDFSE-EDVEFQSREELSGQVENLQQEVDKLVQSYQHGRLLREGVATAIIGRPNAGKSTL 246

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  ++ AIV+ +PGTTRD +      E  + +++DTAG+RE  + +E EGI+R++ +
Sbjct: 247 LNALLGEERAIVSHMPGTTRDYIEECFIYEKTMFRLTDTAGLREAAEEIEHEGIRRSYEK 306

Query: 296 VENADLILLLKEINSKK---------EISFP-KNIDFIFIGTKSDLYSTYTEEYDHL--- 342
           +  ADLIL L +I +           E+     +I  + +  K+D      E  + +   
Sbjct: 307 IAEADLILYLLDIGASDYEEETSTVTELRQKHPDIQLLVVANKTDTTEDSAERSEKVAEK 366

Query: 343 -------ISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA- 393
                  IS+   +GL+ L   + S++    K    S+  +  RH   L      L  A 
Sbjct: 367 TGCQVLGISALKEDGLDRLKAGMSSMVEGLDKLHDASVLVTSMRHYEALRNASDALRNAR 426

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L +     ++IA  LR A   +G+ITG V  E++L++IF +FCIGK
Sbjct: 427 ELIDAQSETELIAFELRSALDYVGEITGKVVNEEVLNVIFGQFCIGK 473


>gi|225849761|ref|YP_002729995.1| tRNA modification GTPase TrmE [Persephonella marina EX-H1]
 gi|225645890|gb|ACO04076.1| tRNA modification GTPase TrmE [Persephonella marina EX-H1]
          Length = 452

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/453 (33%), Positives = 248/453 (54%), Gaps = 20/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDK 63
           K+TI A +T  +PSA+SIIR+SG    ++   + +  +    R+          G ++D+
Sbjct: 3   KDTIVANATPLIPSAVSIIRISGDRALEIGRKLFRLPESIRERRVYFGKITDSKGSVIDE 62

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GL I F  P SFTGED  E + HG + VV  I+EE   +   R A PGEF++RAF NGKI
Sbjct: 63  GLFIFFKGPRSFTGEDVVEIYPHGSVPVVKKIIEEAVNL-GARFAQPGEFTKRAFINGKI 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   R+++  + G+LS    +  + L ++ S IEA+++F E  D
Sbjct: 122 DLTQAEAIADLIEARSEKASRVAVNILEGKLSEKVKELRNSLLYLVSLIEAEINFPE--D 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V+     ++   +  +   I   +   + GEIIR G K+ I+G  N GKSSLFNAL   +
Sbjct: 180 VEEIDPDQIKKGLEHVIKGIDDLLRTYRKGEIIREGIKLAIVGRPNVGKSSLFNALVGYE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV++  GTTRD +   + ++G  VK+ DTAG+RET+D +E  GIK+   ++E AD+++
Sbjct: 240 RAIVSEYRGTTRDFIEETVSIKGIPVKLLDTAGLRETEDKIELIGIKKAKEKIEEADVVI 299

Query: 304 LLKEIN------SKKEISFPKNIDFIFIGTKSDLY-----STYTEEYDHLISSFTGEGLE 352
            + +++        +     K  D I +G KSDL        + ++Y      F    L+
Sbjct: 300 FVFDLSEGLTDEDLRIYEQIKYKDPIVVGNKSDLVNEKELDIFRKKYYFKNVLFVSTKLQ 359

Query: 353 ELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAE 407
           + ++ ++  + +K   +  S   I  + RH   L +    L+  + +++E     +I+  
Sbjct: 360 KNLDHLEEEIFHKLGIIEDSDSEIYINLRHYKALEKAKNILKKTVQNIDELIDFKEILML 419

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  A   L +ITG +  E +L+ IFS+FCIGK
Sbjct: 420 EISEAEKYLEEITGEITTEDVLENIFSRFCIGK 452


>gi|160893418|ref|ZP_02074203.1| hypothetical protein CLOL250_00967 [Clostridium sp. L2-50]
 gi|156864813|gb|EDO58244.1| hypothetical protein CLOL250_00967 [Clostridium sp. L2-50]
          Length = 459

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 236/458 (51%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI---- 60
            +TI A++TG   + + IIR+SG +  +V   + +      +  S++ +    G++    
Sbjct: 4   NDTIAAIATGMGNAGVGIIRISGKNAVEVASKVFRPANKEKKIESMKSYTAAFGQVYDGD 63

Query: 61  --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             LD+G+L++  +P ++T ED  E   HGG+ V+  +L  + K    RLA PGEF++RAF
Sbjct: 64  KELDEGILLLMRAPHTYTCEDVCELQCHGGMVVLRNVLAAVIK-NGARLAEPGEFTKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AES+ DLIS++ +   + S+  + G+L +      +++ +  +FIE+ LD 
Sbjct: 123 LNGRIDLSQAESVMDLISAKNDFAVKSSLMQLRGDLKNQIIDMREQILYNVAFIESALDD 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E   +  +  K     +  L +++   +     G I++ G K VI+G  NAGKSSL N 
Sbjct: 183 PEHYSLDGYPQKLQTI-VDKLGDNVDKLLRTFDNGRILKEGIKTVIVGKPNAGKSSLLNM 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
              ++ AIVTDI GTTRD L   +++ G ++ I DTAGIR+T+DIVEK G+ +       
Sbjct: 242 FLGENRAIVTDIAGTTRDTLEEVVNINGIILNIVDTAGIRDTEDIVEKMGVDKALEFASQ 301

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--------S 344
           ADLIL + +       N K+ IS  K  + I +  K+DL +   + +            S
Sbjct: 302 ADLILYVIDGSVPLDDNDKQIISEIKGKNVIAVMNKNDLQTVVDKMWITCELGCDIVELS 361

Query: 345 SFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
           + TG+G E+L + +     S +         ++ RH   L +T   L       +     
Sbjct: 362 ASTGDGKEKLYDLLNDKFFSGELDYNDQLYITNARHKEELMKTEESLLKVRESIDMGMEE 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  + +L  A   LG I G  + + L D IF +FC+GK
Sbjct: 422 DFFSIDLMDAYEHLGLIIGETNRDDLADKIFEEFCMGK 459


>gi|77920732|ref|YP_358547.1| tRNA modification GTPase TrmE [Pelobacter carbinolicus DSM 2380]
 gi|77546815|gb|ABA90377.1| tRNA modification GTPase trmE [Pelobacter carbinolicus DSM 2380]
          Length = 461

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 142/456 (31%), Positives = 228/456 (50%), Gaps = 21/456 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR----KASLRYFFGLDGR 59
             +TI A +T      I I+RLSG    ++       ++   R          F    G+
Sbjct: 8   NDDTIVAPATAPGEGGIGIVRLSGSGAEKLLLKFFSPRRFCERLDSHFLYYGKFTDETGK 67

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ + ++   P S+T ED  E H HGG  +V  I++ +      RLA PGEF+ RAF 
Sbjct: 68  IVDEVMAVIMRKPRSYTREDVVEIHCHGGGLLVRSIID-VFLAAGARLARPGEFTLRAFL 126

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI S + +   +++  + G L+   G +   +  + + +EA +DF 
Sbjct: 127 NGRIDLTQAEAVIDLIRSRSNLASDVALSQLEGRLAQQIGVFGQVIADLLAQVEAAIDFP 186

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED++    + +      L  D+   I   + G ++R G +++I G  N GKSSL N L
Sbjct: 187 E-EDIELDDQQMLGASAGALIADMDRIIDTFESGRVLREGLRVLIFGKPNVGKSSLMNGL 245

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +  AIVTDIPGTTRD +  DL L G  ++I DTAGIR T D VE+EG++R   +VE+A
Sbjct: 246 LGEARAIVTDIPGTTRDTIEEDLVLGGLPLRIVDTAGIRNTLDPVEEEGVRRARSKVESA 305

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLY-----STYTEEYDHLISSFTG 348
           DL+LL+ +       +    + F +N + + +  K DL      S          S    
Sbjct: 306 DLVLLVIDGSQEMGEDDLLALEFCRNREVLVVINKCDLATLPISSALDGLPYVRTSVLEK 365

Query: 349 EGLEELINKIKSILSNK---FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDI 404
            GL+ L++ I+    +     +     + + +RH   L +  + L        +    + 
Sbjct: 366 NGLDGLVSAIQERFVHNAHVAENRETVVLTQRRHRQALVKARQSLGRFRETLVQGMSPEF 425

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  LR A  ++G+ITG    + +L+ IF++FCIGK
Sbjct: 426 GAVELRDALDAVGEITGETTPDDILERIFTRFCIGK 461


>gi|223983398|ref|ZP_03633584.1| hypothetical protein HOLDEFILI_00864 [Holdemania filiformis DSM
           12042]
 gi|223964570|gb|EEF68896.1| hypothetical protein HOLDEFILI_00864 [Holdemania filiformis DSM
           12042]
          Length = 447

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 144/446 (32%), Positives = 242/446 (54%), Gaps = 11/446 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG---RIL 61
            +TI A+ST     AIS+IR+SGP    +   +  ++       ++RY + +D      +
Sbjct: 3   NDTIAAISTALQDGAISVIRISGPDSLAIAGRLFSRRVDDQPTHTVRYGYIIDPITKEAV 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ LL VF +P++FT ED  E   HGG  +   IL  L      RLA+PGEF+RRAF NG
Sbjct: 63  DEVLLTVFRAPKTFTREDVVEISGHGGRYITRRIL-ALVLAEGARLADPGEFTRRAFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I +++  Q +L+++G+ G +  L     + L +I + IE ++D+ E 
Sbjct: 122 RIDLTQAEAVMDMIDADSSQQAQLAIQGIRGSIRRLIEPLNEALLNIIANIEVNIDYPEY 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED +  + + VL         +   + + + G I++ G K VILG  N GKSSL NAL +
Sbjct: 182 EDAEQLTWESVLPQARSWLIRMDEILQRAESGRIMKKGVKTVILGKPNVGKSSLLNALLE 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT+I GTTRD++  ++ L    + + DTAGI +T+D VE+ GI+R+   +E A+L
Sbjct: 242 EDKAIVTEIAGTTRDLVEGEIHLRNVTLHLIDTAGIHQTEDRVEQIGIERSMKALEEAEL 301

Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           IL++ + +  ++      +   +  + I +  K DL     +    +        +E LI
Sbjct: 302 ILIVLDASRPQDDEDRRLLDLTEGRNRIVVINKKDLAPQAEDRSGTISICAAQNQIEPLI 361

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASV 414
           ++I     +    L     +++R +    Q  + +  A +  +    LD++  +L+ A +
Sbjct: 362 DQINQRYEHHHAMLELPSLANERQIALARQARQSMAQAVNALQDGAELDLVTIDLQAAYM 421

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L +I G    E LLD +FSKFC+GK
Sbjct: 422 ALKEIVGEASREDLLDALFSKFCLGK 447


>gi|90194122|gb|ABD92622.1| ThdF [Actinobacillus indolicus]
          Length = 436

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 150/439 (34%), Positives = 231/439 (52%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      I I+R+SGP    V E +   K P PR A    F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGIGILRVSGPLAADVAEAVLG-KCPKPRMADYLPFKDEDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L  + K+  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDLLLNRILKVKGVRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S      +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSHKINALVDNVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   +++   + K G I+R G K+VI G  NAGKSSL NALA ++ AIVTDI G
Sbjct: 179 EAKLNEIITQLANVRQEAKQGSILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTDIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+RE  D VEK GIKR + E+E AD +LL+ + N  +
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIKRAWDEIEQADHVLLMIDSNESQ 298

Query: 313 E-----------ISFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLEELI 355
                          PKNI    I  K DL                 +S+ T  G++ L 
Sbjct: 299 ADHFQQEWAEFLAKLPKNIPVTVIRNKVDLTGETESLVQTDNFTVIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +L+   +        +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFIARRRHLVALETAAEHLQRGHVQLTQFYAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|124024977|ref|YP_001014093.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. NATL1A]
 gi|166234805|sp|A2C018|MNME_PROM1 RecName: Full=tRNA modification GTPase mnmE
 gi|123960045|gb|ABM74828.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus str. NATL1A]
          Length = 464

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 163/464 (35%), Positives = 248/464 (53%), Gaps = 29/464 (6%)

Query: 2   NHEKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--- 56
           +  ++TI A++T       +I+ IR+SG S  +  + I          ++ +  +G    
Sbjct: 5   SPTEDTIAAIATAVSPGQGSIAAIRISGSSAIETSKNIVD-VPGIQDWSTHKVLYGHVTE 63

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               + +D+ L++V   P SFTGED  E H HGGI  V  ILE +   P++R A PGEFS
Sbjct: 64  ENRKKYIDEVLILVMKGPRSFTGEDVVEIHCHGGIIPVQKILERILAFPSVRRAEPGEFS 123

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RA  NG++ L +AES+++L+S+ +     L++ G+ G + +       +L    + IEA
Sbjct: 124 QRAVLNGRLSLTQAESISELVSARSRKAAELAINGIEGNIQTTIQSIRKRLIEQLTEIEA 183

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF E  D+     K V N+I+ +K D++  I   K G  +R+G K+ + G  N GKSS
Sbjct: 184 RIDFEE--DLPLLDEKHVKNEIVAIKKDLNELIDNAKRGSWVRSGLKVALAGKPNVGKSS 241

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L+K++ AIVTD+PGTTRD+L  ++ LEG  V   DTAG+R+T DI+EK GI RT  
Sbjct: 242 LMNRLSKQEKAIVTDLPGTTRDILESEIVLEGIPVTFIDTAGLRDTKDIIEKIGISRTKK 301

Query: 295 EVENADLILLLKE-----INSKKEI--SFPKNIDFIFIGTKSDLYST----------YTE 337
            + +ADLI+L+ +      N  + I    P NI  + +G KSDL +             +
Sbjct: 302 TLIHADLIILIFDYSSGWTNEDESILKQLPVNIPLLIVGNKSDLMNDQSFEKVPKYILKK 361

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLN 396
           E   ++S+ TG G ++LIN +        +     I  ++R L     T   LE    + 
Sbjct: 362 ENLVILSAKTGNGEDDLINYLLKK-CGSSQTHGLDIALNERQLDLAKSTTESLENINKVF 420

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++    D    +LR A   LG++TG    E LLD IFSKFCIGK
Sbjct: 421 DEKLPWDFWTIDLRQAINYLGELTGEDLTENLLDNIFSKFCIGK 464


>gi|22298504|ref|NP_681751.1| tRNA modification GTPase TrmE [Thermosynechococcus elongatus BP-1]
 gi|223635295|sp|P0C8N9|MNME_SYNEL RecName: Full=tRNA modification GTPase mnmE
 gi|223635296|sp|P0C8P1|MNME_THEEB RecName: Full=tRNA modification GTPase mnmE
 gi|5420315|emb|CAB46651.1| possible thiophene and furan oxidation protein [Synechococcus
           elongatus]
 gi|22294684|dbj|BAC08513.1| thiophen and furan oxidation protein [Thermosynechococcus elongatus
           BP-1]
          Length = 469

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 147/473 (31%), Positives = 247/473 (52%), Gaps = 37/473 (7%)

Query: 1   MNHEKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-- 56
           M H  +TI A++T       +I I+RLSG     + + + +     P + S R  +G   
Sbjct: 1   MRHFHDTIAAIATAIVPQQGSIGIVRLSGAKAVAIAQSLFEAPGKQPWE-SHRILYGYVR 59

Query: 57  ---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
                  +D+ LL++  +P S+T ED  EFH HGG+  V  +L+ L      RLA+PGEF
Sbjct: 60  DPQTKERVDEALLLLMLAPRSYTREDVVEFHCHGGLIPVQRVLQ-LCVAAGARLADPGEF 118

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           + RAF NG++DL +AES+A+L+++++    ++++ G++G+L+    Q       + + IE
Sbjct: 119 TLRAFLNGRLDLTQAESVAELVAAQSTTAAQIALAGLTGKLARPLQQIRQTCLSLLAEIE 178

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF++  ++       +   I  L++ + + ++  + G +IR G K+ I+G  N GKS
Sbjct: 179 ARLDFTD--ELPPLDPAAIAEQIRQLQHQVEAFLATAERGALIRTGLKVAIVGRPNVGKS 236

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NA ++ D AIVTD+PGTTRD++   L + G  +++ DTAGIRETD++VE+ G++R+ 
Sbjct: 237 SLLNAWSRSDRAIVTDLPGTTRDIVESQLVVGGIPIQVLDTAGIRETDNLVEQIGVQRSR 296

Query: 294 LEVENADLILLLKEINSKKEISFPKNID--------------FIFIGTKSDLYSTYTEEY 339
               +ADLILL+ + +     +     D               + +  K+DL S  TE  
Sbjct: 297 QAALSADLILLVIDASQGWTAADQAIYDQLQLKQRRQQAPQSVLVVLNKADLLSETTEVK 356

Query: 340 DHL----------ISSFTGEGLEELINKIKSILSNKF-KKLPFSIPSHKRHLYHLSQTVR 388
           D            +S+ +  G+E+L + I  ++  +           ++R    L Q  +
Sbjct: 357 DIPLPIAPIPTVLLSALSQRGIEQLEDAILHLVQGQGVSAANLDFAINQRQAGLLEQVHQ 416

Query: 389 YLEMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L    +  +    LD    +L  A+ +LG +TG    E +L  IFS+FCIGK
Sbjct: 417 SLNHVLAAIDAQLPLDFWTIDLHAAARALGTLTGEEVTESVLTEIFSRFCIGK 469


>gi|253997708|ref|YP_003049772.1| tRNA modification GTPase TrmE [Methylotenera mobilis JLW8]
 gi|253984387|gb|ACT49245.1| tRNA modification GTPase TrmE [Methylotenera mobilis JLW8]
          Length = 449

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 150/438 (34%), Positives = 235/438 (53%), Gaps = 19/438 (4%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESF 75
               I ++R+SGP    +   +     P PR A+   F   DG ++D+G+ I +P+P S+
Sbjct: 18  GAGGIGVVRVSGPLSQTIAVSVLG-HCPKPRHAAYLDFLQADGDLIDRGIAIFYPNPHSY 76

Query: 76  TGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLI 135
           TGED  E   HGG A++  +L     +   R A PGEF+RRA+ N K+DL +AE++AD+I
Sbjct: 77  TGEDVLELQGHGGTALMQILLARCIAL-GARQAEPGEFTRRAYLNDKMDLAQAEAVADVI 135

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++ T    + ++  +SGE S      + KL  +R ++EA LDF E E++   +   V + 
Sbjct: 136 NAATIEAAKSAVRSLSGEFSQRINTLLSKLIDLRMYVEACLDFPE-EEIDFITQGRVADK 194

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +  +  ++ +   + K G ++R G  +V++G  N GKSSL N LA ++VAIVT I GTTR
Sbjct: 195 LDAIIAEMQAVFVKAKQGSLLREGINVVLVGQPNVGKSSLMNQLAGEEVAIVTAIAGTTR 254

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----- 310
           D +   + + G  + + DTAG+RETDD VEK GI RT+   E A + LLL +        
Sbjct: 255 DTIKNAIQINGVPLHVIDTAGLRETDDEVEKFGIARTWRATETAHIALLLVDATHGITEV 314

Query: 311 KKEI--SFPKNIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           +K I    P+ I  +++  K D      L +         IS+ TG G++ L + +  + 
Sbjct: 315 EKSILARLPQKIPKVWVHNKIDVTQEPALITEQDHAIHIYISAKTGVGVDLLKHHLLQLA 374

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
             +         +  RHL  L++   +L++A+        +++AE LRLA  +L  ITG 
Sbjct: 375 GYQ-NNAEGVFMARARHLSALTEVAAHLDLAASQINSA--ELVAEELRLAQEALSSITGE 431

Query: 423 VDVEQLLDIIFSKFCIGK 440
              + LL  IFSKFCIGK
Sbjct: 432 FTPDDLLGEIFSKFCIGK 449


>gi|37522021|ref|NP_925398.1| tRNA modification GTPase TrmE [Gloeobacter violaceus PCC 7421]
 gi|46577365|sp|Q7NHT3|MNME_GLOVI RecName: Full=tRNA modification GTPase mnmE
 gi|35213020|dbj|BAC90393.1| glr2452 [Gloeobacter violaceus PCC 7421]
          Length = 453

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/455 (34%), Positives = 238/455 (52%), Gaps = 22/455 (4%)

Query: 5   KETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDGR 59
            +TI A++T       ++ I+RLSG     + + + +   K+     +    +F   DG 
Sbjct: 2   SDTICAIATAIVPQQGSVGIVRLSGSEALALAKRVFRLRGKQAFESHRIHYGHFLDADGG 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ILD+ L++   +P SFT ED  EFH HGGIAV+  IL    ++   RLA PGEF+ RAF 
Sbjct: 62  ILDECLVLYMQAPRSFTREDVVEFHCHGGIAVIQQILRRCVEL-GARLARPGEFTLRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL EAE++A+L+S+ +    RL++ G++G+L+    Q       + + +EA LDF 
Sbjct: 121 NGRIDLTEAEAVAELVSARSPEAARLAVGGLAGKLAGEVRQLRSGCLDLLAELEARLDFE 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +  D+    +  V  +I          ++    GE++R G K+ I+G  N GKSSL NA 
Sbjct: 181 D--DLPPLDTGAVRANIGQSLAHARRLMATSTRGELLRTGLKVAIVGRPNVGKSSLLNAW 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           ++ D AIVTD+PGTTRDV+   L+++G  V++ DTAGIRE  D VE+ GI+R+      A
Sbjct: 239 SRTDRAIVTDLPGTTRDVVESMLNVQGIPVQVLDTAGIREATDTVERIGIERSHAAAREA 298

Query: 300 DLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFT---- 347
           DL+LL+ +             +  +    I +  KSDL     YT     L +  T    
Sbjct: 299 DLVLLVIDRTEGWTCADSDIFAQVRERPVIVVVNKSDLEGPPVYTPSRGVLATVPTAAPV 358

Query: 348 GEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDII 405
           G+G++ L   I + L    F         ++R    L +    L  +    E    +D  
Sbjct: 359 GDGIDALEGAILAALGQEAFSVADGDFAVNERQYEALVRAEVALVRVVETVEAALPIDFW 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +LR A+ +LG++TG    E +L+ IFSKFCIGK
Sbjct: 419 TIDLRAAAHALGEVTGESVTEAVLERIFSKFCIGK 453


>gi|205422256|sp|Q07UP2|MNME_RHOP5 RecName: Full=tRNA modification GTPase mnmE
          Length = 453

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 167/457 (36%), Positives = 254/457 (55%), Gaps = 21/457 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA+S+G  PSAI+I+R+SG    ++ E +  +  P PR A        DG  
Sbjct: 1   MHASDQTIFALSSGRPPSAIAIVRVSGSRGAKIVEALAGR-LPTPRMAMRALIKDRDGEP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ FP P S TGED AEFH+HGG AV+  ++  L+   N+R A PGEF+RRAFE+
Sbjct: 60  IDDAVVLWFPGPASATGEDVAEFHIHGGRAVLAALMATLSSFENVRAAEPGEFTRRAFEH 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL EAE L DLI ++T+ QRR ++  ++G L      W  ++   ++ IEA +DF++
Sbjct: 120 GKIDLTEAEGLDDLIHADTDRQRRQALRQLNGLLGDRARDWRAQIIEAQALIEAGIDFAD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV +      L  I  L  +I + ++     E +R+G  + I+G  N GKS+L N LA
Sbjct: 180 EGDVPDDLLAPALAKIEALAGEIEALLAAQGRSERLRDGLVVAIVGPPNVGKSTLMNQLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRDV+ + LDL+GY V + DTAGIR++DD VE+EG++R       AD
Sbjct: 240 RREVAIVSPHAGTTRDVIEVHLDLDGYPVTVIDTAGIRDSDDPVEQEGVRRAQARAAEAD 299

Query: 301 LILLLK-EINSKKEISFPKNIDFIFIGTKSDLYSTYT----------------EEYDHLI 343
           L+L L  +       +   +     +  K DL    T                 +    I
Sbjct: 300 LVLWLLADDQVAAPAAIESDAPVWLVRNKVDLAGAATGVKPAKNLEANLGQNVPQPSFAI 359

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
           S+  G+G+ +L+  +    +  F        + +RH   L   +  L+ +     +   +
Sbjct: 360 SAKRGDGIADLVGALGGFAAEFFGAGEAGAITRQRHRDLLRDALVMLQCSKRGRAE---E 416

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+LR AS SLG++ G VDVE +LD +F  FCIGK
Sbjct: 417 LVAEDLRSASRSLGRLLGQVDVEDVLDALFRDFCIGK 453


>gi|317484428|ref|ZP_07943342.1| tRNA modification GTPase TrmE [Bilophila wadsworthia 3_1_6]
 gi|316924316|gb|EFV45488.1| tRNA modification GTPase TrmE [Bilophila wadsworthia 3_1_6]
          Length = 461

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 146/462 (31%), Positives = 231/462 (50%), Gaps = 27/462 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFGLDGRI 60
             +TI A++T      I I+R+SGP    + E +     K    P           +G  
Sbjct: 2   TTDTIAAIATAPGAGGIGIVRVSGPGALPILEKLFAPAGKGGYKPWILRRGRVQDTEGNT 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD  L +  P P++FTGED AEF  HGG  ++  +LE        RLA  GEF+RRAF N
Sbjct: 62  LDDSLAVFMPGPKTFTGEDVAEFQCHGGPVLLAAVLEACL-CAGARLAERGEFTRRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++A++I++ ++   RL+   + G L    G   +++ H+R+ I   +DF E
Sbjct: 121 GRMDLTQAEAVAEMIAAPSKEGARLAAAKLDGVLGQRIGDLRERVEHLRAQICLAVDFPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+V+    +  L+ I  +K  ++S ++  +     R G  + + G  NAGKSSL NAL 
Sbjct: 181 -EEVECLPQEGFLSAIADVKAAVASLLAGFERTRCWREGVTVALAGPVNAGKSSLMNALL 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +  A+VT+ PGTTRD L   + L G  V++ DTAG+RETD+  E +GI+     +E+AD
Sbjct: 240 GRQRAVVTEYPGTTRDFLEEPIQLAGLPVRLVDTAGLRETDNPAEAQGIQLGRSMIESAD 299

Query: 301 LILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI----------- 343
           ++LL+ +       ++   +S       I +  KSDL +     Y   +           
Sbjct: 300 VVLLMVDGTEGTTPDTWALLSELGPERTILVWNKSDLATPPPHWYGKEMNLSVKPAAHAV 359

Query: 344 -SSFTGEGLEELINKIKSIL---SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
            S+  GEGLE L   ++ +    S   +  P     + R    L + +  LE    +   
Sbjct: 360 ISARKGEGLETLAEAVRELALARSQGQEPEPGEAVPNLRQARSLMEVLGELEALEQDVLA 419

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D+ A  L  A+ +L +ITG    E++L+ IF+ FCIGK
Sbjct: 420 GVPYDLCAVRLEGAASALAEITGLDTPEEVLNRIFASFCIGK 461


>gi|189218144|ref|YP_001938786.1| tRNA modification GTPase, TrmE [Methylacidiphilum infernorum V4]
 gi|189185002|gb|ACD82187.1| tRNA modification GTPase, TrmE [Methylacidiphilum infernorum V4]
          Length = 441

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 164/444 (36%), Positives = 238/444 (53%), Gaps = 12/444 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGRILDK 63
           ++TI A +T    SAI++IR+SGP   ++   + +K  K  P++   R  +     +LD 
Sbjct: 2   EDTIVAPATPPALSAIALIRMSGPKSLEIISSLLRKSFKGDPQRLYYRKLY-FGEELLDD 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            +L  + SP S+TGED  E   HG   +V  ILE   K    RLA+PGEF++RAF NGK+
Sbjct: 61  VVLSYWKSPRSYTGEDMIEISCHGNPYIVERILEACLK-KGARLASPGEFTKRAFLNGKM 119

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ DLI +   +  + +    SG LS    +   +L  I + +EA +DF E ED
Sbjct: 120 DLTQAEAIIDLIHAGGMLALKSAQALQSGGLSKELLRIRAELIDILAEVEAYIDFPE-ED 178

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +Q     +++  +L ++N +S+ +S   L  ++R G  IV+ G  N GKSSLFNAL K++
Sbjct: 179 IQPEVGDQLIGRLLAMENKLSTLLSSAPLSRVLREGLTIVLAGSPNVGKSSLFNALLKEN 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV+  PGTTRD +  +  +  +LVKI DTAG R  DD +E EGI+R    V+  DLIL
Sbjct: 239 RAIVSPHPGTTRDTIEAECRISSFLVKIVDTAGQRVADDQIEAEGIRRAQEAVKRGDLIL 298

Query: 304 LLKEINSKKEIS------FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            L                       I I +K+DL      +  H +S  TG GLEEL  K
Sbjct: 299 HLVSAPDDPSTDPYVLPQLQAQQKVIAIASKADLGIHPANKDKHALSIVTGMGLEELEEK 358

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSL 416
           IK +L + F  + FS   + R    L++    L  A L  K+    ++I+  L      +
Sbjct: 359 IKKLLESFF-PMDFSYGVNPRQQAALAKMAEALNKAILGIKNSLPPELISSELHECLERV 417

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G+I G V  E +LD IF KFCIGK
Sbjct: 418 GEIVGLVSSEDILDKIFQKFCIGK 441


>gi|294085212|ref|YP_003551972.1| tRNA modification GTPase TrmE [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664787|gb|ADE39888.1| tRNA modification GTPase TrmE [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 458

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/443 (34%), Positives = 232/443 (52%), Gaps = 9/443 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TIFA++T    SAI+I+R+SG       +    +     R A +R     DG+ +D+ 
Sbjct: 18  NDTIFALATPPGRSAIAIVRISGKKAAYAADAFDVRCPKMGRFA-VRRLKNADGQPIDEV 76

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LL+   +P S TGED  E H HG  AV   IL+ LA++   R A PGEF+RRAF N K D
Sbjct: 77  LLLYMQAPRSPTGEDVLEIHCHGSQAVQTMILDRLAQIAGFRPALPGEFTRRAFGNDKFD 136

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L   E LADLI +ET  Q   +   + G L      W + L  +   +EA +DF++ ED+
Sbjct: 137 LSGVEGLADLIDAETPAQLHQAWAQLDGALRKPVTAWRETLISLAGQLEALIDFAD-EDL 195

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                  +      L ++I++ ++  K GE+IR+G K+ +LG  NAGKS+  NA++ +D 
Sbjct: 196 PASVEAALRTSTATLISEIAAIMADNKAGEVIRDGVKVALLGSVNAGKSTALNAISGRDA 255

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
            I +   GTTRD++ + +DL G  V   DTAG+R+    +E EGI+R      +AD  L+
Sbjct: 256 VITSAEAGTTRDIVAVKMDLGGVPVTFMDTAGLRDGAGAIEAEGIRRARQAGRDADFGLI 315

Query: 305 LKEINSKK------EISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISSFTGEGLEELINK 357
           + + +  K      EIS       + +  K DL       E    +S    + +E LI  
Sbjct: 316 ILDGSDPKWPDHLAEISDLTGGQHLIVLNKCDLGLVGSVPEGALHLSLRDHKDVEVLIAA 375

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           I   ++   +    +I +  RH   L   ++ LE    ++ +   ++ AE+ R+A+ +LG
Sbjct: 376 ITKAIAPLNQDGQSAIITRARHRDALMGAMQSLERGLTHDFNVNPELAAEDFRMAATALG 435

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           +ITG +DVE LL  IFS FCIGK
Sbjct: 436 RITGKIDVEDLLGSIFSSFCIGK 458


>gi|148654184|ref|YP_001281277.1| tRNA modification GTPase TrmE [Psychrobacter sp. PRwf-1]
 gi|172048596|sp|A5WI36|MNME_PSYWF RecName: Full=tRNA modification GTPase mnmE
 gi|148573268|gb|ABQ95327.1| tRNA modification GTPase trmE [Psychrobacter sp. PRwf-1]
          Length = 465

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 155/469 (33%), Positives = 251/469 (53%), Gaps = 33/469 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M H   TI A++T      + IIRLSGP  + +   +  K+   PR AS   F+  +  +
Sbjct: 1   MTHTT-TIAAIATPVGRGGVGIIRLSGPKAYAIACALTGKESFTPRLASFCRFYDANNNV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL++ F +P SFTGED  E   HGG+ + N +L  + ++     A  GEFS RAF+N
Sbjct: 60  LDEGLVLYFKAPHSFTGEDVIELQGHGGMILQNQLLARVFEL-GAHQAQAGEFSYRAFDN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DLL+AE++AD I + +      ++  ++G  S+   + ++ L  +R ++EA +DF +
Sbjct: 119 DKLDLLQAEAIADAIDATSAAAASSAIRSLTGAFSNKINEVLEALIELRLYVEASIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EEDV   S   +   +  ++  +++ +S  + G+++R+G  +V+ G  NAGKSSL N+LA
Sbjct: 179 EEDVDFLSDGVIEGKLQRIQQQLTTILSTAQQGQLLRDGVHVVLAGRPNAGKSSLLNSLA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTD+ GTTRD L   + L G  + ++DTAG+R+T D VE+ GI+R    +  AD
Sbjct: 239 GQERAIVTDVAGTTRDTLQETIVLNGLTIHLTDTAGLRDTTDAVERIGIERARTAINQAD 298

Query: 301 LILLLKEINSK------------KEISFPKNID---FIFIGTKSDLYSTYTEEYDH---- 341
           L+LL+ +++ +            + I    N D    + IG K DL     E  +     
Sbjct: 299 LLLLVYDLSQEVDPLKLASELFGEGIDGTPNFDPSKLLLIGNKRDLVEDKGESANKLADK 358

Query: 342 ---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
                     +S  T +G+ +LI  +   +   F     S+ +  RHL  L +T ++++ 
Sbjct: 359 ADILGYEQVNVSCETSQGIPQLIASLCDKV--GFHPPENSLIARTRHLDALRRTQQHVDE 416

Query: 393 ASLNE-KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A          +++AE+LR    SLG+ITG    + LL  IF  FCIGK
Sbjct: 417 AHQQLVIYQAGELVAESLRQGQYSLGEITGEFSADDLLGRIFGSFCIGK 465


>gi|330818728|ref|YP_004362433.1| tRNA modification GTPase TrmE [Burkholderia gladioli BSR3]
 gi|327371121|gb|AEA62477.1| tRNA modification GTPase TrmE [Burkholderia gladioli BSR3]
          Length = 468

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/467 (32%), Positives = 239/467 (51%), Gaps = 31/467 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLS-GPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG 58
           ++ + I A++T A    I ++R+S G +     E + +    +   PR AS   F    G
Sbjct: 4   NDSDPIVAIATAAGRGGIGVVRVSFGRAGAAAAEALMRAVCGQVLAPRHASYVPFLDAAG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEFSR 115
             LD+G+ + F +P S+TGE   E   HGG  V+  +L+      +   LRLA PGEF+R
Sbjct: 64  AALDRGIALYFTAPNSYTGEHVLELQGHGGPIVLQLVLQRCLDAGREHALRLAEPGEFTR 123

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AE++ADLI + TE   R +   + G  S      ++ +  +R  +EA 
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAVRSAGRSLDGVFSRDIHALVEDVIGLRMLVEAT 183

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKSSL
Sbjct: 184 LDFPE-EEIDFLEAADARGKLARIRERLAQVLGDARQGALLREGMSVVLAGQPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+ E
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGE 302

Query: 296 VENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDLYSTYT------------ 336
           +E AD++L L +  +            FP  +  + +  K+DL                 
Sbjct: 303 IERADVVLHLLDAQTGLGTEDRAIAERFPAGVPVVRVFNKTDLSGEAASVTHPGSGAAGE 362

Query: 337 -EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS- 394
            +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+ 
Sbjct: 363 VDLTELRLSAKQGDGIDLLRAELLRIAGWQAG-AESVYLARERHLVALRAAQEHLAQAAD 421

Query: 395 -LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 422 HADQNAQALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 468


>gi|266620968|ref|ZP_06113903.1| tRNA modification GTPase TrmE [Clostridium hathewayi DSM 13479]
 gi|288867390|gb|EFC99688.1| tRNA modification GTPase TrmE [Clostridium hathewayi DSM 13479]
          Length = 459

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/457 (33%), Positives = 240/457 (52%), Gaps = 25/457 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK------ASLRYFFGLDG-R 59
           TI A++T    S I I+R+SG   F + + I + K    RK       ++ Y +  DG  
Sbjct: 5   TIAAIATAMSSSGIGIVRISGDEAFTIIDKIYRVKGKNSRKLSDAPSHTIHYGYIADGDE 64

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L+++   P+SFT ED+ E   HGG+ +   ILE + K    R A PGEF++RAF 
Sbjct: 65  IIDEVLVMLMRGPKSFTAEDTVEIDCHGGVLITKKILETVLK-YGARPAEPGEFTKRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+S+ +   + S+  + G +S+   +  +++ +  +FIE+ LD  
Sbjct: 124 NGRIDLAQAEAVIDVINSKNDYALKASVSQLDGAVSNAVKKLREQIIYQIAFIESALDDP 183

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +  +  + +L+ I  LK  +   I     G ++  G K VILG  NAGKSSL N L
Sbjct: 184 EHISLDGY-GESLLSVIQGLKEGLWKLIRSADNGRVMTEGIKTVILGKPNAGKSSLLNVL 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTD+ GTTRD L   + LE   + + DTAGIR+TDDIVEK G+++     + A
Sbjct: 243 VGEERAIVTDVAGTTRDTLEETIRLEDITLNVIDTAGIRDTDDIVEKIGVEKARNAADAA 302

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISS 345
           DLI+ + +       N ++ + F K+   + +  KSDL    T +            IS+
Sbjct: 303 DLIIYVVDGSCPLDENDEEILKFIKDRKAVVLLNKSDLTMEITADMLASRTAHRVIAISA 362

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
               G+E L ++IK++  +        +  ++ RH   L Q    LEM     +     D
Sbjct: 363 KERVGIELLEDEIKTMFYHGEIDFNDEVTITNVRHKNALEQAYSSLEMVEQSIQNGMPED 422

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + +L  A   LG I G    + L+  IFSKFC+GK
Sbjct: 423 FYSIDLMDAYEQLGLIIGEAVEDDLVHEIFSKFCMGK 459


>gi|323141443|ref|ZP_08076333.1| tRNA modification GTPase TrmE [Phascolarctobacterium sp. YIT 12067]
 gi|322414099|gb|EFY04928.1| tRNA modification GTPase TrmE [Phascolarctobacterium sp. YIT 12067]
          Length = 459

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 137/459 (29%), Positives = 231/459 (50%), Gaps = 25/459 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS------LRYFFGLDG 58
           ++TI AV+T     A+ I+R+SGP    V E + K        A         + +  DG
Sbjct: 3   EDTISAVTTALGEGAVGIVRISGPKALAVGETLFKAASGKALGAYPVNTLAYGHVYDTDG 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L +   +P S+T ED  E   HGG+  +  IL+ L      R A  GEF++RAF
Sbjct: 63  SLVDEVLAVYMRAPRSYTAEDVVEIQCHGGVQPLQKILQ-LTFAAGARPAEAGEFTKRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I S +E   +L+     G+L+        +L  I   +EA +D+
Sbjct: 122 LNGRIDLTQAEAVMDIIRSRSEASLKLAARQQQGQLAGELRSLRKQLVDIVVNLEAVIDY 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E ED+++ +   V   +  + + I   ++    G+I+R G +  I+G  N GKSSL NA
Sbjct: 182 PE-EDIEDVTYGRVQESLSTVCSGIEHLLAHAHTGKILREGLRTAIVGRPNVGKSSLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIV+   GTTRDV+   L L+G  + ++DTAGIR TDD VEK G++++   + +
Sbjct: 241 LLREERAIVSQYAGTTRDVIEEQLLLDGVPLVLADTAGIRATDDFVEKIGVEKSRQLLAD 300

Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLY---------STYTEEYDHLI 343
           ++L++ + + +       +  +        + I  KSDL            +  +    +
Sbjct: 301 SELVICVIDGSDGLTDEDEAILEAAAGKPCVVIVNKSDLPQQVDLAQLRERFGADKVMTL 360

Query: 344 SSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CG 401
           S+ T  G+E     +KS +      L   +   + R    L + +  L+ A    +D   
Sbjct: 361 SAKTLVGIEAFTAWLKSYVYGSKGTLGDGAYIQNARQERLLREALAGLQDAEFAAQDYLP 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D I  ++R A   LG+ITG    +++++ IF +FCIGK
Sbjct: 421 YDCIVIDVRSAIDLLGEITGDTVQDEIINEIFERFCIGK 459


>gi|205422380|sp|Q39ZT0|MNME_PELCD RecName: Full=tRNA modification GTPase mnmE
          Length = 456

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 142/456 (31%), Positives = 228/456 (50%), Gaps = 21/456 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR----KASLRYFFGLDGR 59
             +TI A +T      I I+RLSG    ++       ++   R          F    G+
Sbjct: 3   NDDTIVAPATAPGEGGIGIVRLSGSGAEKLLLKFFSPRRFCERLDSHFLYYGKFTDETGK 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ + ++   P S+T ED  E H HGG  +V  I++ +      RLA PGEF+ RAF 
Sbjct: 63  IVDEVMAVIMRKPRSYTREDVVEIHCHGGGLLVRSIID-VFLAAGARLARPGEFTLRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI S + +   +++  + G L+   G +   +  + + +EA +DF 
Sbjct: 122 NGRIDLTQAEAVIDLIRSRSNLASDVALSQLEGRLAQQIGVFGQVIADLLAQVEAAIDFP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED++    + +      L  D+   I   + G ++R G +++I G  N GKSSL N L
Sbjct: 182 E-EDIELDDQQMLGASAGALIADMDRIIDTFESGRVLREGLRVLIFGKPNVGKSSLMNGL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +  AIVTDIPGTTRD +  DL L G  ++I DTAGIR T D VE+EG++R   +VE+A
Sbjct: 241 LGEARAIVTDIPGTTRDTIEEDLVLGGLPLRIVDTAGIRNTLDPVEEEGVRRARSKVESA 300

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLY-----STYTEEYDHLISSFTG 348
           DL+LL+ +       +    + F +N + + +  K DL      S          S    
Sbjct: 301 DLVLLVIDGSQEMGEDDLLALEFCRNREVLVVINKCDLATLPISSALDGLPYVRTSVLEK 360

Query: 349 EGLEELINKIKSILSNK---FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDI 404
            GL+ L++ I+    +     +     + + +RH   L +  + L        +    + 
Sbjct: 361 NGLDGLVSAIQERFVHNAHVAENRETVVLTQRRHRQALVKARQSLGRFRETLVQGMSPEF 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  LR A  ++G+ITG    + +L+ IF++FCIGK
Sbjct: 421 GAVELRDALDAVGEITGETTPDDILERIFTRFCIGK 456


>gi|90194126|gb|ABD92624.1| ThdF [Haemophilus parasuis]
          Length = 436

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/439 (34%), Positives = 236/439 (53%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      I I+R+SGP   +V + +   K P PR A    F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGIGILRVSGPIATEVAQAVLG-KCPKPRIADYLPFKDEDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L  + K+  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  HSFTGEDVLELQGHGGQVILDLLLNRILKVKGVRIARAGEFSEQAFLNNKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   +++   + K G I+R G K+VI G  NAGKSSL NALA ++ AIVTDI G
Sbjct: 179 EAKLNEIIAQLANVRQEAKQGTILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTDIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+RE  D VEK GIKR + E+E AD +LL+ + N  +
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIKRAWDEIEQADHVLLMIDSNESQ 298

Query: 313 EISF-----------PKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLEELI 355
             SF           PKNI    I  K DL                 +S+ T  G++ L 
Sbjct: 299 ADSFQQEWATFLAKLPKNIPVTVIRNKVDLTGEAESLVQADNFTVIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFIARRRHLVALETAAEHLERGHIQLTQFYAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|317500879|ref|ZP_07959091.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897759|gb|EFV19818.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 465

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 235/465 (50%), Gaps = 31/465 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-------- 56
           KETI A+STG   S I I+R+SG     V + I + KK      S    +G         
Sbjct: 3   KETIAAISTGMTNSGIGIVRISGEEAVLVADRIYRGKKKLCEVKSHTINYGYIVDREISS 62

Query: 57  ----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
                  ++D+ L+ V  +P +FTGED+ E + HGG  VV  +LE L        A PGE
Sbjct: 63  AEKKSEEVIDEVLVTVMKAPGTFTGEDTVEINCHGGTFVVKKVLE-LVLKNGASPAEPGE 121

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NGK+DL +AE++ D+I+SE E   + S+  + G +        +K+ +  +FI
Sbjct: 122 FTKRAFLNGKMDLSQAEAVIDVINSENEYALQSSVSQLKGSVKKKINDIREKIIYHTAFI 181

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E  LD  E   V  +S   + +    +  ++   I     G +I+ G K VI+G  NAGK
Sbjct: 182 ETALDDPEHISVDGYS-DTLRSSAEEIIQELERLIHSADDGRVIKEGIKTVIVGKPNAGK 240

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N LA  + AIVTDI GTTRDVL   + L G  + + DTAGIR+T+D++EK G+ + 
Sbjct: 241 SSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGGLNLNVVDTAGIRQTEDLIEKIGVDKA 300

Query: 293 FLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY------- 339
               E ADLI+ + +       N +K I+   +   I +  KSD+ +  + E+       
Sbjct: 301 LEYAETADLIIYVVDASRSLDENDEKIINMISDKKSIVLLNKSDIDTVISAEHIKEKVSN 360

Query: 340 --DHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-L 395
                IS+    G+++L +K+K + L            S+ R    L + +  ++     
Sbjct: 361 IPIISISAKEERGIKDLEDKVKEMFLKGDISFNDQVYISNVRQKNALLEALESMKKVIRS 420

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +   D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 421 IDDNMPEDFYSIDLMDAYESLGYITGNSVGEDLINEIFSKFCMGK 465


>gi|15604593|ref|NP_221111.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str. Madrid E]
 gi|6647889|sp|Q9ZCI1|MNME_RICPR RecName: Full=tRNA modification GTPase mnmE
 gi|3861288|emb|CAA15187.1| POSSIBLE THIOPHENE AND FURAN OXIDATION PROTEIN THDF (thdF)
           [Rickettsia prowazekii]
 gi|292572404|gb|ADE30319.1| tRNA modification GTPase TrmE [Rickettsia prowazekii Rp22]
          Length = 445

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/448 (34%), Positives = 251/448 (56%), Gaps = 17/448 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR-YFFGLDGRILDKG 64
           ETIFA S+    + +++ R+SGP   +V + +  +K   PR    +         ++D  
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKDFKPRLMYYQQIIVPETNELIDNA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F  P SFTGED  E H HG  A+   ++  L  + ++RLA  GEF++RAF N K D
Sbjct: 62  MVVYFKLPNSFTGEDVVEIHTHGSKAISIMLINTLLNIADIRLAEAGEFTKRAFLNNKFD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE +ADLI++ET MQ R ++   +G L  LY +W ++L  I S +EA +DF + ED+
Sbjct: 122 LTAAEGIADLINAETIMQHRQAVRQANGGLKELYNKWRNQLLKIISLLEAYIDFPD-EDI 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                 +V N    + N+IS++++  + GE++ NG K+ I+G  N GKSSL N L ++++
Sbjct: 181 PESILNDVNNTHKNIVNEISNYLNDNRRGELLNNGLKLAIIGPPNTGKSSLLNFLMQRNI 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIV++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + A++ +
Sbjct: 241 AIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRTESTDIIEQEGIKRAINSAKTANIKI 300

Query: 304 LLKEINSKK-----EISFPKNIDFIFIGTKSDLYS---TYTEEYDHLI---SSFTGEGLE 352
           ++ +          +I+   + + I I  K DL     T+  E  +     S      L 
Sbjct: 301 VMFDAEKLDSSINNDITGLIDENTIVIINKIDLIEPNKTFAIENRYKCLRVSVKNNIALS 360

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            ++  I++I  N          +++RH ++L Q + +L   +L   D  L +  E++R+ 
Sbjct: 361 NILKNIENIAENLAGVTETPYITNQRHRHYLKQALSHLIDFNL---DNDLVLATEDIRMT 417

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +G ITG ++VE++L+ IF  FCIGK
Sbjct: 418 VRCIGLITGVINVEEILNEIFKNFCIGK 445


>gi|254418996|ref|ZP_05032720.1| tRNA modification GTPase TrmE [Brevundimonas sp. BAL3]
 gi|196185173|gb|EDX80149.1| tRNA modification GTPase TrmE [Brevundimonas sp. BAL3]
          Length = 436

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 169/439 (38%), Positives = 257/439 (58%), Gaps = 8/439 (1%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TIFA++T     AI+++RLSGP             +  PR AS+R      G  +D+ 
Sbjct: 3   QDTIFALATPPGRGAIAVMRLSGPG-VDAALTALGATRLKPRMASVRDL-AYAGDHIDQA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F +P S+TGEDSAE H+HGG AVV      L  +  +R A PGEF+RRAF+NG++D
Sbjct: 61  LVLRFVAPHSYTGEDSAELHLHGGRAVVEAASGALIAL-GVRPAEPGEFTRRAFQNGRMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI +ET  Q R ++  + G+LS  Y  +   L H  + +EA++DF + EDV
Sbjct: 120 LAQAEAVADLIDAETAAQARQALGQLDGKLSETYAGFRRDLLHALALVEAEIDFPD-EDV 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +  ++     +  L  D+   +  G+ GE +R+GY+IV++G +NAGKSSLFNAL +++ 
Sbjct: 179 PDNLARTAGPVLDRLAEDLRRAVDTGRRGERVRDGYRIVLIGETNAGKSSLFNALVEREA 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT I GTTRDVL  DL + GY V +SDTAG+RE+ D VE EG++R  +  E ADL L 
Sbjct: 239 AIVTPIAGTTRDVLDADLVIGGYAVTLSDTAGLRESADPVEAEGVRRARMRAEQADLRLW 298

Query: 305 LKEINSKKEISFP-KNIDFIFIGTKSDLYSTYTEEY--DHLISSFTGEGLEELINKIKSI 361
           ++       ++        + +  K+DL  +          +SS +GEGL  L + I + 
Sbjct: 299 VRAPGDPDGVAAAYARPGDLVVANKADLGGSVPSGGFDRIEVSSRSGEGLLLLRDWIATR 358

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
           L+       F   + +RH   L++ +  +E A     D G ++  E+LR A+ +L ++TG
Sbjct: 359 LAQDLSGADFPAVTRERHRLRLNEALEAVE-AGRRALDAGPEMAGEDLRRAAEALSRVTG 417

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            + VE +L  +FS FCIGK
Sbjct: 418 AIGVEDILGEVFSTFCIGK 436


>gi|86606766|ref|YP_475529.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-3-3Ab]
 gi|123505609|sp|Q2JSU8|MNME_SYNJA RecName: Full=tRNA modification GTPase mnmE
 gi|86555308|gb|ABD00266.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-3-3Ab]
          Length = 459

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 143/440 (32%), Positives = 227/440 (51%), Gaps = 20/440 (4%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR----YFFGLDGRILDKGLLIVFPSPE 73
            +I I+RLSG     + + I    +      S R    +     GR LD+ L +   +P 
Sbjct: 23  GSIGIVRLSGSRALAIAQAIFTPARRNAVWESHRLLYGWIHDEKGRRLDEALAVWMQAPR 82

Query: 74  SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133
           S+T ED  E H HGGI VV   L++  +    RLA PGEFS RAF NG+IDL +AES+AD
Sbjct: 83  SYTREDVVELHCHGGIMVVQATLQQCLR-QGARLAQPGEFSLRAFLNGRIDLTQAESVAD 141

Query: 134 LISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           L+++ +    ++++ G+ G+L         +L  + + IEA LDF E  D+         
Sbjct: 142 LVAARSPQAAQMALAGLQGKLGQSIRALRQELLGLLAEIEARLDFEE--DLPPLDVPAWQ 199

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             +  ++  + + ++  + G+++R G K+ I+G  N GKSSL NA + +D AIVTD+PGT
Sbjct: 200 ARLQDIQAQMQALLATAERGQLLRTGVKVAIVGRPNVGKSSLLNAWSGQDRAIVTDLPGT 259

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--- 310
           TRDV+   L + G  V++ DTAGIR TDD VE+ G++R+    + AD+++L+ +  +   
Sbjct: 260 TRDVVESQLVVRGIPVQLLDTAGIRATDDPVERLGVERSQRLAQTADVLVLVIDAQAGWT 319

Query: 311 ---KKEISFPKNIDFIFIGTKSDLYSTYTEE------YDHLISSFTGEGLEELINKIKSI 361
                  +  ++   I +  K+DL             Y     +  G+G+ EL   ++ +
Sbjct: 320 EADAAIYASIRHRPLILVINKTDLAPADKIRLPPEIAYRVPAVAAQGQGIPELEEALEQL 379

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDCGLDIIAENLRLASVSLGKIT 420
           ++    +    +  ++R    L Q    LE      +    LD    +LR A  +LG+IT
Sbjct: 380 VTQGRPQPNLEVSLNQRQAAALRQAQASLEQVVQAMQAQLPLDFWTIDLRGALHALGQIT 439

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G    E +LD IFS+FCIGK
Sbjct: 440 GEEISEAVLDQIFSRFCIGK 459


>gi|83655357|gb|ABC39420.1| tRNA modification GTPase TrmE [Burkholderia thailandensis E264]
          Length = 540

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/468 (32%), Positives = 237/468 (50%), Gaps = 30/468 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T +    I ++R+S    G +            +  PR AS   F   
Sbjct: 75  LATDSDPIVAIATASGRGGIGVVRISLGRAGEAAALALSDALCGARLTPRHASYVPFLDG 134

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGEF
Sbjct: 135 AGEPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEF 194

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +E
Sbjct: 195 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVE 254

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKS
Sbjct: 255 ATLDFPE-EEIDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKS 313

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+
Sbjct: 314 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTW 373

Query: 294 LEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYST------------ 334
            E+E AD++L L +        +      FP  +  + +  K+DL               
Sbjct: 374 GEIERADVVLHLLDARSGLGPDDEAIAARFPAGVPVVRVLNKTDLTEAPASVARVGSGAE 433

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
             +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     ++  A+
Sbjct: 434 RADLCEVRLSAKRGDGIDLLRGELLRIAGWQAG-AESVYLARERHLIALRAAQAHVARAA 492

Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 493 EHADQNAQALDLFAEELRLAQEQLNSITGEFSSDDLLGVIFSRFCIGK 540


>gi|332286178|ref|YP_004418089.1| tRNA modification GTPase TrmE [Pusillimonas sp. T7-7]
 gi|330430131|gb|AEC21465.1| tRNA modification GTPase TrmE [Pusillimonas sp. T7-7]
          Length = 488

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/491 (31%), Positives = 232/491 (47%), Gaps = 54/491 (10%)

Query: 1   MN-HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           M  H  + I A++T      I ++R+SG     +   +       PR A    F    G+
Sbjct: 1   MTMHSHDPIVAIATAPGRGGIGVVRVSGNQLEPLISRLFT-TPIKPRHAHYLPFNDEHGK 59

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEFSRR 116
            +D G+++ F  P+S+TGED  E   HGG AV+  +L       K   +R A PGEF+ R
Sbjct: 60  AIDAGIVLFFKGPQSYTGEDVLELQGHGGPAVLRRLLARCLDAGKDLGIRHAEPGEFTHR 119

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF N ++DL +AE++ADLI + +E   R +M  +SG  S       D++ H+R  +EA L
Sbjct: 120 AFLNERLDLAQAEAVADLIDASSEAAARSAMASLSGAFSDQVNALGDRIVHLRMLVEATL 179

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF E E++      +    +  ++ D+     Q + G I+R G  +V+ G  N GKSSL 
Sbjct: 180 DFPE-EEIDFLEKYQARAALEAIRKDLQHLTQQARQGMILREGLHVVLAGQPNVGKSSLL 238

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA  D+AIVT I GTTRD +   + ++G  + I DTAG+RET+D VE  GI RT+ E+
Sbjct: 239 NALAGDDIAIVTPIAGTTRDKVIQQIHIQGVPLHIVDTAGLRETEDTVESIGIARTWAEI 298

Query: 297 ENADLILLLKEINSKKEI-------SFPKNIDFIFIGTKSDLYSTYT------------- 336
           E A++I+ L++  ++ +          P     + +  K DL                  
Sbjct: 299 EKANVIIHLQDARAQNDELDTAITRRLPARTPVLKVFNKIDLLPENEQAHFQPGTVSTLA 358

Query: 337 -------------------------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                                    +E    IS+ TG GL+ L  ++ +I          
Sbjct: 359 TDSTSPGHSTGKASDPSAQKASDDHQELALGISAKTGAGLDTLRQQLLNIAGWNPGS-ES 417

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCVDVEQLL 429
              + +RHL  L     +L +A  +       LD+ AE LRLA   L  ITG    + LL
Sbjct: 418 PWLARERHLTALQHASEHLALAHEHASQNDRVLDLFAEELRLAHEELCLITGQFTSDDLL 477

Query: 430 DIIFSKFCIGK 440
             IFS FCIGK
Sbjct: 478 GEIFSSFCIGK 488


>gi|39998554|ref|NP_954505.1| tRNA modification GTPase TrmE [Geobacter sulfurreducens PCA]
 gi|81700815|sp|Q746Q3|MNME_GEOSL RecName: Full=tRNA modification GTPase mnmE
 gi|39985501|gb|AAR36855.1| tRNA modification GTPase TrmE [Geobacter sulfurreducens PCA]
 gi|298507496|gb|ADI86219.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34) modification GTPase
           [Geobacter sulfurreducens KN400]
          Length = 456

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 141/456 (30%), Positives = 235/456 (51%), Gaps = 23/456 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGR 59
           ++TI A+ST A    + I+R+SGP    +   + ++        S R+++G     + G 
Sbjct: 4   EDTIAAISTAAGEGGVGIVRVSGPDAPSIARRVFRRGSNGD-FESHRFYYGSVVDAVTGE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ + ++   P S+T ED  E   HGG  V   +LE L      RLA PGEF+RRAF 
Sbjct: 63  AVDEAMAVLMVRPRSYTREDVLEIQCHGGYLVTRRVLE-LVLAAGARLAEPGEFTRRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL++AE++ D+I ++T+    L+     G LS      + +L    + +EA +DF 
Sbjct: 122 NGRIDLVQAEAVIDVIRAKTDAALALAQHQRQGRLSQRLDTVMAELRQALALVEAFIDFP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +D+   +   +   +      +   I+    G ++R G  ++I G  N GKSSL N L
Sbjct: 182 E-DDIDPAAQDALTVHVRKAAETVGELIAGFDEGRVLREGVAVLIAGKPNVGKSSLLNTL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++  AIVT +PGTTRD++   +++ G  +++ DTAGIR+T+DIVEKEG++ T  ++  A
Sbjct: 241 LQEKRAIVTSVPGTTRDIIEEVVNIRGLPLRMIDTAGIRDTEDIVEKEGVRLTLEKIPEA 300

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST--YTEEYDHLI----SSFT 347
           DL+LL+ +       + +  +S       I +  K DL       +E   +     S+  
Sbjct: 301 DLVLLVIDGSRPLDEDDRMILSALAGKRLILVENKCDLPRAVQIPDELVLMPRVTVSTSR 360

Query: 348 GEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404
           G+G++EL   I     +        +   S  RH   LS++  +L            L++
Sbjct: 361 GDGIDELKESIFQTFIHGAAIDSREYVAVSRVRHRDLLSRSTMHLTAFEQGLASGFTLEL 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A  LR A  ++G++TG    + +LD+IF +FCIGK
Sbjct: 421 LAVELRDALAAVGEVTGETTPDDILDVIFDRFCIGK 456


>gi|90194080|gb|ABD92601.1| ThdF [Lonepinella koalarum]
          Length = 436

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 147/439 (33%), Positives = 238/439 (54%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   +V + +  K    PR A+   F  +D  +LD+G+ + F SP
Sbjct: 1   TPIGRGGVGILRVSGPLAMEVAQAVVGKAL-KPRFANYLPFKNVDDTVLDQGIALFFKSP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF NGK+DL +AE++A
Sbjct: 60  HSFTGEDVLELQGHGGQMVLDLLLKRILQVQGVRLARPGEFSEQAFLNGKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKVNQLVDNVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
            N +  +   +    ++ K G I+R G K+VI G  NAGKSSL NALA +D AIVT+I G
Sbjct: 179 ENKLNEIIVQLDKVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD +LL+ +     
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGINRAWHEIEQADRVLLMLDSTDAD 298

Query: 313 EIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELI 355
                          P+++    I  K+DL       S         +S+ T +G++ L 
Sbjct: 299 SADLNKVRLEFLQKLPESLPVTIIRNKTDLSGENTGLSEENGYITIRLSAQTQQGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASV 414
             +K  +  +         + +RHL  L +   +L++  +        +++AE LRL   
Sbjct: 359 EHLKQTMGYQ-TTTEGGFLARRRHLEALEKAAEHLQLGHIQLTQFHAGELLAEELRLVQT 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
            L +ITG    + LL  IF
Sbjct: 418 YLSEITGKFTSDDLLGNIF 436


>gi|153815417|ref|ZP_01968085.1| hypothetical protein RUMTOR_01652 [Ruminococcus torques ATCC 27756]
 gi|145847276|gb|EDK24194.1| hypothetical protein RUMTOR_01652 [Ruminococcus torques ATCC 27756]
          Length = 465

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 235/465 (50%), Gaps = 31/465 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-------- 56
           KETI A+STG   S I I+R+SG     V + I + KK      S    +G         
Sbjct: 3   KETIAAISTGMTNSGIGIVRISGEEAVLVADRIYRGKKKLCEVKSHTINYGYIVDREISS 62

Query: 57  ----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
                  ++D+ L+ V  +P +FTGED+ E + HGG  VV  +LE + K      A PGE
Sbjct: 63  AEKKSEEVIDEVLVTVMKAPGTFTGEDTVEINCHGGTFVVKKVLELVLK-NGASPAEPGE 121

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NGK+DL +AE++ D+I+SE E   + S+  + G +         K+ +  +FI
Sbjct: 122 FTKRAFLNGKMDLSQAEAVIDVINSENEYALQSSVSQLKGSVKKKINDIRKKIIYHTAFI 181

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E  LD  E   V  +S   + +    +  ++   I     G +I+ G K VI+G  NAGK
Sbjct: 182 ETALDDPEHISVDGYS-DTLRSSAEEIIQELERLIHSADDGRVIKEGIKTVIVGKPNAGK 240

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N LA  + AIVTDI GTTRDVL   + L G  + + DTAGIR+T+D++EK G+ + 
Sbjct: 241 SSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGGLNLNVVDTAGIRQTEDLIEKIGVDKA 300

Query: 293 FLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY------- 339
               E ADLI+ + +       N +K I+   +   I +  KSD+ +  + E+       
Sbjct: 301 LEYAETADLIIYVVDASRSLDENDEKIINMISDKKSIVLLNKSDIDTVISAEHIKEKVSN 360

Query: 340 --DHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-L 395
                IS+    G+++L +K+K + L            S+ R    L + +  ++     
Sbjct: 361 IPIISISAKEERGIKDLEDKVKEMFLKGDISFNDQVYISNVRQKNALLEALESMKKVIRS 420

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +   D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 421 IDDNMPEDFYSIDLMDAYESLGYITGNSVGEDLINEIFSKFCMGK 465


>gi|167582764|ref|ZP_02375638.1| tRNA modification GTPase TrmE [Burkholderia thailandensis TXDOH]
          Length = 467

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 237/468 (50%), Gaps = 30/468 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T +    I ++R+S    G +            +  PR AS   F   
Sbjct: 2   LATDSDPIVAIATASGRGGIGVVRISLGRAGEAAALALSDALCGARLTPRHASYVPFLDG 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGEF
Sbjct: 62  AGEPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPE-EEIDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYST------------ 334
            E+E AD++L L +        +      FP  +  + +  K+DL               
Sbjct: 301 GEIERADVVLHLLDARSGLGPDDEAIAARFPAGVPVVRVLNKTDLTEAPASVARVGGGAE 360

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
             +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+
Sbjct: 361 RADLCEVRLSAKRGDGIDLLRGELLRIAGWQAG-AESVYLARERHLIALRAAQAHLARAA 419

Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 EHADQNAQALDLFAEELRLAQEQLNSITGEFSSDDLLGVIFSRFCIGK 467


>gi|161723129|ref|YP_443727.2| tRNA modification GTPase TrmE [Burkholderia thailandensis E264]
 gi|167620891|ref|ZP_02389522.1| tRNA modification GTPase TrmE [Burkholderia thailandensis Bt4]
 gi|205829163|sp|Q2STM2|MNME_BURTA RecName: Full=tRNA modification GTPase mnmE
          Length = 467

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/468 (32%), Positives = 237/468 (50%), Gaps = 30/468 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + + I A++T +    I ++R+S    G +            +  PR AS   F   
Sbjct: 2   LATDSDPIVAIATASGRGGIGVVRISLGRAGEAAALALSDALCGARLTPRHASYVPFLDG 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGEF
Sbjct: 62  AGEPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPE-EEIDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYST------------ 334
            E+E AD++L L +        +      FP  +  + +  K+DL               
Sbjct: 301 GEIERADVVLHLLDARSGLGPDDEAIAARFPAGVPVVRVLNKTDLTEAPASVARVGSGAE 360

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
             +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     ++  A+
Sbjct: 361 RADLCEVRLSAKRGDGIDLLRGELLRIAGWQAG-AESVYLARERHLIALRAAQAHVARAA 419

Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 EHADQNAQALDLFAEELRLAQEQLNSITGEFSSDDLLGVIFSRFCIGK 467


>gi|90194124|gb|ABD92623.1| ThdF [Actinobacillus porcinus]
          Length = 436

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 147/439 (33%), Positives = 240/439 (54%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP    V + +   K   PR A+   F  +DG  LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRVSGPLAEDVAKAVVG-KTLKPRLANYLPFKDIDGTTLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQIVLDLLLKRILQVKGVRLAKPGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q ++++ ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDASSEQAARSALKSLQGEFSNKVNQLVEQVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   + +   + + G I+R G K+VI G  NAGKSSL NALA ++ AIVTDI G
Sbjct: 179 EGHLNEIIAQLDNVRREARQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           TTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD +LL+ +     
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGITRAWNEIEQADRVLLMLDSSDPA 298

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLY---STYTEEYDHLI---SSFTGEGLEELI 355
                 + S+     P N+    I  K+DL     +  EE  + I   S+ T +G++ L 
Sbjct: 299 SNDLEKVRSEFLAKLPANLPVTIIRNKTDLSGEGESIQEENGYTIIRLSAQTQQGVDFLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASV 414
             +K  +  +         + +RHL  L +   +L+   +        +++AE LRL   
Sbjct: 359 EHLKQSMGYQTGT-EGGFLARRRHLEALEKAAEHLQAGHIQLTQFYAGELLAEELRLVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
            L +ITG    + LL  IF
Sbjct: 418 CLSEITGQFTSDDLLGNIF 436


>gi|160882059|ref|YP_001561027.1| tRNA modification GTPase TrmE [Clostridium phytofermentans ISDg]
 gi|189036198|sp|A9KLX9|MNME_CLOPH RecName: Full=tRNA modification GTPase mnmE
 gi|160430725|gb|ABX44288.1| tRNA modification GTPase TrmE [Clostridium phytofermentans ISDg]
          Length = 458

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 154/457 (33%), Positives = 241/457 (52%), Gaps = 24/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-----KASLRYFFGLDGR- 59
           +TI A++TG   + ISI+R+SG   F V + I + K    R       ++ Y + +D   
Sbjct: 4   DTIAAIATGLSNAGISIVRISGDQAFAVIDKIFQTKSKAKRLSEMDSHTVHYGYIVDEEE 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ ++I+  +P S+T EDS E   HGGI V   +LE + K    R+A PGEF++RAF 
Sbjct: 64  IIDEVMVIIMRAPRSYTMEDSIEIDCHGGITVTKKVLEAVLKA-GARIAEPGEFTKRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I +  E+  + SM+ + G +          +    ++IEA LD  
Sbjct: 123 NGRIDLSQAEAVIDVIHANNELALKNSMKQLKGNVLHKVKDVRHSIILDTAYIEAALDDP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   ++ FS K   N I  +K ++S  I+  + G +I+ G + VILG  NAGKSSL N +
Sbjct: 183 EHISLEGFSDKLRDNVIGSIK-ELSELINTSENGRMIKEGIRTVILGRPNAGKSSLLNLM 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVT+I GTTRD +   + L G  + + DTAGIRET D+VEK G++++    + A
Sbjct: 242 VGEERAIVTEIAGTTRDTIEETVFLNGLCLNLIDTAGIRETSDLVEKLGVEKSLKSAKEA 301

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH--------LISS 345
           DLI+ + +       + K+ + F K+   I +  KSDL S   EE  +         IS+
Sbjct: 302 DLIICVIDASTPLNQDDKEILEFIKDRKAIVLLNKSDLDSVIEEEKINLLTNKPILKISA 361

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL-NEKDCGLD 403
               G+++L   I  +           I  ++ RH   L +    LE   +  E +   D
Sbjct: 362 IDQTGIKDLEQTITEMFFEGNISFNDEIYITNMRHKNALVEAKVSLEQVIVSIENEMPED 421

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + +L  A   LG I G    E L++ IF +FC+GK
Sbjct: 422 FFSIDLMNAYEILGTIIGESVDEDLVNTIFKEFCMGK 458


>gi|329113883|ref|ZP_08242654.1| tRNA modification GTPase MnmE [Acetobacter pomorum DM001]
 gi|326696893|gb|EGE48563.1| tRNA modification GTPase MnmE [Acetobacter pomorum DM001]
          Length = 443

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 170/446 (38%), Positives = 251/446 (56%), Gaps = 17/446 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF---GLDGR 59
             ++TIFA+STG   +AI+++R+SG     +   +C  K P  RKA LR  +        
Sbjct: 7   QAEDTIFALSTGIERAAIAVLRVSGAGSRNILLQLCG-KVPEARKAVLRKIWKNASAQDD 65

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ L++ FP P+S+TGED  E H+H G A++  + + L ++   R A PGEF+RRAF 
Sbjct: 66  LLDEALVLWFPGPQSYTGEDGFELHLHAGPAIIRAVSDALVQL-GARPAEPGEFTRRAFV 124

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL+EAE +ADL+++ET+ QR+L++    G LS LY  W ++L  + +F EA +DF 
Sbjct: 125 NGRMDLVEAEGIADLVAAETDGQRKLALAQADGALSHLYSGWSERLKKVLAFQEALIDFP 184

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + E +     + +  +I  L+ ++  HI+ G+ GE IR G    I G  NAGKSSL N L
Sbjct: 185 D-EGLPPEVEEGINQEIQKLQFEMQQHIADGEHGERIRQGVVFAITGPPNAGKSSLLNWL 243

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIV+   GTTRD L +   L G  V   DTAG+RETDD +E EG++R    V+ A
Sbjct: 244 TGRDTAIVSSKAGTTRDALEVACILAGIKVTFVDTAGLRETDDEIEAEGVRRALFHVKQA 303

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSD---LYSTYTEEYDHLISSFTGEGLEELIN 356
           D +L +   N   +  FP   D + IG K+D   +      +    IS  TGEGL EL  
Sbjct: 304 DCVLQMFPANEPPDDVFP---DAVLIGNKADIGEIPKVIQGKNVRAISLKTGEGLPELYT 360

Query: 357 KIKSILSNKFKK--LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
            ++  +            + +  RH   + + V+ L  A    +    ++  E LRLA  
Sbjct: 361 FLQRKVEELTAASISGAPLLTRARHKAGVQEAVQCLHAA---LQQDWPELRGEELRLAMR 417

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LG++TG V VE LLD IF +FCIGK
Sbjct: 418 ALGRLTGHVGVEDLLDTIFGQFCIGK 443


>gi|189347846|ref|YP_001944375.1| tRNA modification GTPase TrmE [Chlorobium limicola DSM 245]
 gi|189341993|gb|ACD91396.1| tRNA modification GTPase TrmE [Chlorobium limicola DSM 245]
          Length = 473

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 147/467 (31%), Positives = 247/467 (52%), Gaps = 33/467 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--------KKPFPRKASLRYFFG 55
           +++ I A++T     A+++IR+SG     + + + +K        ++     A     + 
Sbjct: 10  QEDPIAAIATPLGVGALAVIRISGSGVLDIAQGLFRKSGHFDFQLRESKGFTAHFGRVYD 69

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            DG ++D+ + +VF SP S+T ED  EF  HGG  VV  +L+ L +    R A PGEF+R
Sbjct: 70  RDG-LVDEVIALVFRSPNSYTREDMVEFSCHGGPVVVRHMLQALYEA-GCRPAEPGEFTR 127

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDLL+AE++ ++I + +E   R ++  M G LS    Q   +L    + +E +
Sbjct: 128 RAFINGRIDLLQAEAIGEMIHARSESAYRTAVNQMQGNLSMKLEQLRQRLLESCAMLELE 187

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDFSE EDV+  S  E+   ++ L+ ++   +   + G ++  G   VI+G  NAGKS+L
Sbjct: 188 LDFSE-EDVEFQSRGELREQLMQLQAEVQKLVDSYQHGRLLSEGVATVIVGKPNAGKSTL 246

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  ++ AIV+ +PGTTRD +      E  + +++DTAG+RE  + +E+EG+ R++ +
Sbjct: 247 LNTLLGEERAIVSHMPGTTRDYIEECFVHEKTMFRLTDTAGLREAAEEIEREGVGRSYKK 306

Query: 296 VENADLILLLKEINSKKEISFPK----------NIDFIFIGTKSDLYSTYTEEYDH---- 341
           +  ADLIL + +++  + +   +          +   I I  K+DL S   E        
Sbjct: 307 IGEADLILYMLDLSQPESLKESEVIREFRETYTHAKLIVIANKTDLASDSEERLQQLREE 366

Query: 342 ------LISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA- 393
                  IS+  GEG++ L+  + S++    K    S+  +  RH   L      +  A 
Sbjct: 367 TGCDVAGISAKQGEGIDGLLRLMSSMVEGLDKLHDASVLVTSLRHYVSLRNAGDAVRNAL 426

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L     G ++IA  LR A   +G+ITG V  E++L++IF +FC+GK
Sbjct: 427 ELLGAYAGTELIAFELRSALDYVGEITGKVVSEEVLNVIFDRFCVGK 473


>gi|152990630|ref|YP_001356352.1| tRNA modification GTPase TrmE [Nitratiruptor sp. SB155-2]
 gi|172048731|sp|A6Q3D6|MNME_NITSB RecName: Full=tRNA modification GTPase mnmE
 gi|151422491|dbj|BAF69995.1| tRNA modification GTPase TrmE [Nitratiruptor sp. SB155-2]
          Length = 448

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 245/452 (54%), Gaps = 16/452 (3%)

Query: 1   MNHEK-ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           MN E   TI A++T     +I+I+R+SGP    + + + KKK   PR A L   +     
Sbjct: 1   MNFENNSTIAAIATAYGVGSIAIVRISGPKSLSIAQKLSKKKDIQPRVAHLVTLYDDQSE 60

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +LI F +P+SFTGED  EF  HGG+ V N IL+EL K    RLANPGEFS+RAF 
Sbjct: 61  PIDQAILIYFQAPKSFTGEDVVEFQCHGGVVVANMILQELLKA-GARLANPGEFSKRAFF 119

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGKIDL EAE++A +I +++E   ++  + + GEL +      +KL  I +++E ++D++
Sbjct: 120 NGKIDLSEAEAIAKMIEAKSEDAAKILAKQIKGELKNYIENLREKLIRILAYVEVNIDYA 179

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED+     +++   +  ++ ++   ++  K    +  G+K+ I+G  N GKSSL NAL
Sbjct: 180 E-EDLPKDLQEQIEQQLNDIQEELQKIVASSKRRAGLIEGFKVAIIGKPNTGKSSLLNAL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + AIV+DI GTTRD +   + +  +LV+  DTAGIRE  D +EK GI+R+   +E +
Sbjct: 239 LDYERAIVSDIAGTTRDTIEESVRIGTHLVRFVDTAGIREAHDTIEKIGIERSIQAIEES 298

Query: 300 DLILLLKEINSKKEISFPK----------NIDFIFIGTKSDLYSTYT-EEYDHLISSFTG 348
           D+++ + + +   +    K            +FI +  K D        ++D L  S   
Sbjct: 299 DIVIAMFDASKPLDAEDKKILELIESYKDQKEFIVVANKVDKGKHLDLSDFDALYMSVKK 358

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           E +  L  K++ +L + F      +    R +  ++  +  +  A    +   L+I A +
Sbjct: 359 E-ITPLTQKLQKLL-DSFANTEEIMLVTSRQIEAVTYALENINQARTPLQMGELEIFAFH 416

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +     S+G IT  +   +LLD +F +FC+GK
Sbjct: 417 INRVIESIGSITRPMQSSELLDKMFGEFCLGK 448


>gi|68171554|ref|ZP_00544931.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658612|ref|YP_506891.1| tRNA modification GTPase TrmE [Ehrlichia chaffeensis str. Arkansas]
 gi|123494024|sp|Q2GI42|MNME_EHRCR RecName: Full=tRNA modification GTPase mnmE
 gi|67999020|gb|EAM85694.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Ehrlichia chaffeensis str. Sapulpa]
 gi|88600069|gb|ABD45538.1| tRNA modification GTPase TrmE [Ehrlichia chaffeensis str. Arkansas]
          Length = 439

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/444 (37%), Positives = 248/444 (55%), Gaps = 17/444 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+ T    S +++IR+SG    +            PR A+    +  DG ++D+ ++
Sbjct: 3   TIFALCTPWGRSGVAVIRISGEDAAKAFVHFGINSSIKPRTATFTPLYDKDGEVIDEAIV 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F +P SFTGED  EFH HG  AV+  IL EL K+     A PGEFS RAF N K+DL 
Sbjct: 63  VYFVAPNSFTGEDVVEFHTHGSFAVIKMILAELGKI--FVPAGPGEFSLRAFLNNKVDLT 120

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
            AE++ DLI+SETEMQ + ++  MSG L  LY  W  +L  I S IEA +DF EE +   
Sbjct: 121 RAEAIVDLINSETEMQAKQAIRQMSGVLEKLYQNWRQQLIDILSNIEAYIDFPEEVNSSA 180

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            ++ + L  +  L+  + SH++  + GE +R G  + ILG  N+GKS+LFN LAK+D+AI
Sbjct: 181 IANIDYL--LNNLQKSLESHLNDDRRGERLRQGIYVTILGEPNSGKSTLFNHLAKRDIAI 238

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           V++  GTTRD L   +D+ GY + I DTAGIRE+ D VE+EGIKR  L+ ENAD  +++ 
Sbjct: 239 VSEYAGTTRDPLEAHIDVAGYPIIIIDTAGIRESTDPVEQEGIKRAKLKAENADFKIVML 298

Query: 307 EINSK----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT-----GEGLEELINK 357
               +    +EI    +   I I +K+D  +          S          G+E L+N 
Sbjct: 299 PYEKRDIFNREIMSLIDDKSICILSKADNITDQKLIPVFDFSFIPISVYCNIGIENLLNL 358

Query: 358 IKSILSNKFKKLP-FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           IK  +   F+        + +R   H+  T+  ++   L      ++I++E+LRL+   L
Sbjct: 359 IKQKVEKDFQFCNTDPFITSERQRKHIQNTLNIIKSVDL---SLPMEIVSEDLRLSVREL 415

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           GK+ G +  + +LD +F KFCIGK
Sbjct: 416 GKVVGVISDDDILDNVFGKFCIGK 439


>gi|293400090|ref|ZP_06644236.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306490|gb|EFE47733.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 443

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 150/446 (33%), Positives = 253/446 (56%), Gaps = 15/446 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG---RIL 61
           ++TI A+ST A+  AISIIR+SG +  Q+ + +C       +  ++ Y F LD      +
Sbjct: 3   QDTIAAISTAAVDGAISIIRMSGDAAIQIVDSLCSIDLTSKKSHTISYGFILDPITKEEI 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ VF +P++FT ED  E + HGG  V   IL+ L  M   RLA PGEF+RRAF NG
Sbjct: 63  DEVLVSVFRAPKTFTREDIVEINCHGGRYVTKKILQ-LCLMQGARLAEPGEFTRRAFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I +++   R+L+M G+ G +  L   +I  +  I + IE ++D+ E 
Sbjct: 122 RIDLTQAEAINDMILADSNESRKLAMHGIRGSVKKLLEPFIKNILDIIANIEVNIDYPEY 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +DV+  S++ +L  I    + I   + + + G++++ G K  I+G  N GKSSL NAL +
Sbjct: 182 DDVEMLSNEVILPKIQKWLSQIDQLLERAESGQMMKEGIKTAIIGKPNVGKSSLLNALLE 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT+I GTTRD++   + L G  + + DTAGIRET+D+VEK GI+R+   +E+A L
Sbjct: 242 EDKAIVTEIAGTTRDIVEGHIHLGGLTLNLIDTAGIRETEDVVEKIGIERSMKAIEDAQL 301

Query: 302 ILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           I+L+ + +       ++ +   +N   I +  K DL     +    +  S     +E LI
Sbjct: 302 IILVLDASRPLDEEDQQLMQMTENKTRIIVYNKKDL----NQHIKGICISAQHHEIEPLI 357

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRLASV 414
           +++  +  +    +   + +++R +  + +  +  L           LD++  +++ A  
Sbjct: 358 HEVHRLFDSHKIVIEEPVLANERQISQMMKAKKSMLSAVDAIAMGLELDVVEIDIQEAYT 417

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L +I G V  E LLD +F+ FC+GK
Sbjct: 418 ALKEILGEVHREDLLDTLFANFCLGK 443


>gi|121598239|ref|YP_994136.1| tRNA modification GTPase TrmE [Burkholderia mallei SAVP1]
 gi|124384367|ref|YP_001028207.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10229]
 gi|126449818|ref|YP_001083053.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10247]
 gi|238563702|ref|ZP_00438440.2| tRNA modification GTPase TrmE [Burkholderia mallei GB8 horse 4]
 gi|251767367|ref|ZP_04820085.1| tRNA modification GTPase TrmE [Burkholderia mallei PRL-20]
 gi|254175200|ref|ZP_04881861.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 10399]
 gi|254201961|ref|ZP_04908325.1| tRNA modification GTPase TrmE [Burkholderia mallei FMH]
 gi|254207294|ref|ZP_04913645.1| tRNA modification GTPase TrmE [Burkholderia mallei JHU]
 gi|254359603|ref|ZP_04975874.1| tRNA modification GTPase TrmE [Burkholderia mallei 2002721280]
 gi|121227049|gb|ABM49567.1| tRNA modification GTPase TrmE [Burkholderia mallei SAVP1]
 gi|124292387|gb|ABN01656.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10229]
 gi|126242688|gb|ABO05781.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10247]
 gi|147747855|gb|EDK54931.1| tRNA modification GTPase TrmE [Burkholderia mallei FMH]
 gi|147752836|gb|EDK59902.1| tRNA modification GTPase TrmE [Burkholderia mallei JHU]
 gi|148028817|gb|EDK86749.1| tRNA modification GTPase TrmE [Burkholderia mallei 2002721280]
 gi|160696245|gb|EDP86215.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 10399]
 gi|238520163|gb|EEP83625.1| tRNA modification GTPase TrmE [Burkholderia mallei GB8 horse 4]
 gi|243063001|gb|EES45187.1| tRNA modification GTPase TrmE [Burkholderia mallei PRL-20]
          Length = 488

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/469 (32%), Positives = 241/469 (51%), Gaps = 32/469 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T +    I ++RLS       +   + + +C  +   PR AS   F  
Sbjct: 23  LATDSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGARL-MPRHASYVPFLD 81

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 82  GAGEPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEPGE 141

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +
Sbjct: 142 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLV 201

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 202 EATLDFPE-EEIDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGK 260

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT
Sbjct: 261 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAGLRETEDEVEKIGIART 320

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLY------------S 333
           + E+E AD++L L +        +      FP  +  + +  K+DL             +
Sbjct: 321 WGEIERADVVLHLLDARSGLGPGDEAIAARFPDGVPVVRVLNKTDLTGAPASVTRTGGGA 380

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A
Sbjct: 381 ARADVCEVRLSAKRGDGIDLLRGELLRIAGWQAG-AESVYLARERHLIALRAAQAHLARA 439

Query: 394 SLNEKD--CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + + +     LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 440 AEHAEQNAQALDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFCIGK 488


>gi|218248879|ref|YP_002374250.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8801]
 gi|218169357|gb|ACK68094.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8801]
          Length = 460

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 145/456 (31%), Positives = 234/456 (51%), Gaps = 25/456 (5%)

Query: 6   ETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           ETI A++T       +I I+RLSG     +   +        +  S R  +G        
Sbjct: 9   ETIAAIATAIVPQQGSIGIVRLSGNQAVTIARQLFT-APGQQKWESHRILYGYIRHPQTQ 67

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+   +    +LA PGEF+ RAF
Sbjct: 68  QVIDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQLCVE-QGAKLAQPGEFTLRAF 126

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AES+A L+ + +    ++++ G+ G+L+    Q  D+   I + +EA +DF
Sbjct: 127 LNGRIDLTQAESVAQLVGARSPQASQMALAGLQGKLAQPIRQLRDRCLDILAEVEARIDF 186

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D+       ++  +  +   + + ++    GE++R G K+ I+G  N GKSSL NA
Sbjct: 187 EE--DLPPLDENSIIEGLQDILTHVQALLATADRGELLRTGLKVAIVGRPNVGKSSLLNA 244

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIRET D VEK G++R+      
Sbjct: 245 WSRSDRAIVTDLPGTTRDVVESQLIVGGIPIQVLDTAGIRETADRVEKLGVERSRHVASQ 304

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDL-----YSTYTE-EYDHLISSF 346
           ADL+LL  +         +      ++   I +  K DL      S   + +      + 
Sbjct: 305 ADLVLLTIDAQMGWTTEDEAIYQQVQHRPLILVINKIDLGLADSLSFIPQIKQIVKTVAA 364

Query: 347 TGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDI 404
             +G+E+L   I + + ++  +     +  ++R    L++    LE           LD 
Sbjct: 365 QNQGIEQLEKAILASVESQNIQAANLDLAINQRQAAVLTRAKIALEKVQETIVNQLPLDF 424

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 425 WTIDLRAAIQALGEITGEEITESVLDRIFSRFCIGK 460


>gi|312115383|ref|YP_004012979.1| tRNA modification GTPase TrmE [Rhodomicrobium vannielii ATCC 17100]
 gi|311220512|gb|ADP71880.1| tRNA modification GTPase TrmE [Rhodomicrobium vannielii ATCC 17100]
          Length = 460

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 165/460 (35%), Positives = 250/460 (54%), Gaps = 27/460 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDKGL 65
           TI+A+S+    + I++IR+SG +  +    +C  + P PR +S R         +LD+ +
Sbjct: 2   TIYALSSAPGRAGIAVIRISGRASRKTLYALCNGRLPAPRVSSFRRLRHPTSREMLDEAM 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++  P P +FTGED AE +VHGG AVV  ++  LA +  LRLA PGEF+RRAF NGK+DL
Sbjct: 62  VLWLPGPANFTGEDMAELYVHGGRAVVTAVMNALADV-GLRLAEPGEFTRRAFGNGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE LADLI+++TE+QRR ++   SG + + Y +W   L    +++EA LDFS+E D+ 
Sbjct: 121 TEAEGLADLINADTEIQRRQALAQHSGAMRARYEKWRRTLLKAMAYVEASLDFSDEADIA 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           + + KE + +   L  ++   ++ G+ GEI+R G  + I+G  N GKSSL NALA ++ A
Sbjct: 181 DGAFKEAVPEARLLAAELERALADGRRGEILREGISVAIVGEPNVGKSSLLNALAGREAA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV D PGTTRDV+ + LDL+GY   + DTAGIRE    VE+EG++R     E AD++L +
Sbjct: 241 IVYDEPGTTRDVIEVSLDLDGYPFVLRDTAGIREAASPVEQEGVRRALAAAEAADVVLAM 300

Query: 306 KEINSKKEISFPKNIDFI--------------------FIGTKSDLYSTYTEEY----DH 341
            + +     + P   +                       +  K DL              
Sbjct: 301 VDGSCGDAGALPAEGEAGGTPSGEGIAAAVTSSSGVKLIVVNKVDLAPPPAPGSFGPEAI 360

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDC 400
            IS+ T  GL+ L   +    S  +        +  RH   + +    L       E   
Sbjct: 361 YISAKTCLGLDALKAALVRFASESYGSGEAPTITRVRHRQEIGRARAALVAFLDGAEAGE 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++ AE+LR A+ +LG++TG +DVE +L  IF +FC+GK
Sbjct: 421 APELAAEHLREAADALGRLTGRLDVEDVLGQIFGEFCVGK 460


>gi|170058589|ref|XP_001864986.1| tRNA modification GTPase GTPBP3, mitochondrial [Culex
           quinquefasciatus]
 gi|167877662|gb|EDS41045.1| tRNA modification GTPase GTPBP3, mitochondrial [Culex
           quinquefasciatus]
          Length = 490

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/470 (37%), Positives = 256/470 (54%), Gaps = 36/470 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYF-FGLDGRILDKG 64
           TIF +S+G+    +++IR+SG +   V        K P  R+A LR         ++D+G
Sbjct: 21  TIFGLSSGSGKCGVAVIRVSGDASSDVVHRKTSSNKLPAARQAVLRRIVHSRTAEMIDRG 80

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGED  EFHVHGG AVV+ + + L  +  +RLA PGEF++RAF  GK+D
Sbjct: 81  LVLWFPGPHSFTGEDCVEFHVHGGAAVVSAMYDSLGSIDGVRLAEPGEFTKRAFYAGKMD 140

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QR+ ++   SGELS LY +   +L    + +EA +DF+E++DV
Sbjct: 141 LTEVEGLADLIEAETEAQRKQALLQASGELSKLYNEMRSRLVRCIANVEAYIDFAEDQDV 200

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +   + V  D+  L  DIS+H++  + GE +R G +  I+G  N GKSS  N L+ + V
Sbjct: 201 DDTVLQSVGEDVATLVRDISTHLNDHRRGERLRAGVRTAIIGAPNVGKSSFVNLLSNRKV 260

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           +IVT++ GTTRD++    D+ GY V ++DTAG+R  TDDIVE EGI R     + ADL++
Sbjct: 261 SIVTNVAGTTRDIIESHHDIGGYPVILADTAGLRASTDDIVEIEGISRAKDYFQLADLLI 320

Query: 304 LLKEINSKKEI----------------------SFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           L+ +    +                                + I  K DL      E   
Sbjct: 321 LMIDSEDLQRYLQNGDTFDCFLSHYLTSLGINREALSTAKSMLIVNKCDLLPESFLEPIK 380

Query: 342 LI------SSFTGEGLEELINKIKSILSNKFKKL--PFSIPSHKRHLYHLSQTVRYLEMA 393
            I      S  T  GLE ++ +I + L +            S +RH YHL Q V  LE  
Sbjct: 381 KIPNITLLSCHTQAGLEAVLQEITTNLKHLCGNPSKESPNLSQQRHRYHLKQCVDCLEKY 440

Query: 394 S---LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 +++  L I  ++LR A+  +GKITG ++ E++LD+IFS FCIGK
Sbjct: 441 QRYVEGQRNPDLAIATQHLRNATRCIGKITGAIETEEILDVIFSTFCIGK 490


>gi|19703358|ref|NP_602920.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|25009491|sp|Q8RHA2|MNME_FUSNN RecName: Full=tRNA modification GTPase mnmE
 gi|19713420|gb|AAL94219.1| Thiophene and furan oxidation protein THDF [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 455

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 143/454 (31%), Positives = 237/454 (52%), Gaps = 21/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLDGR-IL 61
           +TI A+ST      ISI+R+SG     + E I K K       +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFKPKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ E 
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSILDLAAHINVVLDYPE- 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E + +   + ++ ++     +I   +S    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 182 EGIDDPVPENLVENLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGE 349
           IL + + + + +               I I  K D+            E    IS+ +  
Sbjct: 302 ILYVIDTSREIDEEDFRIYDIINTDKVIGILNKIDIKKEINLSKFPKIEKWIEISALSKL 361

Query: 350 GLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIA 406
           G++ L N+I   + N+  +      + ++ RH   L +T    L +    +    +D++A
Sbjct: 362 GIDNLENEIYKYIMNENIEDSSQKLVITNVRHKSALEKTNEALLNIIETIDMGLPMDLMA 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 422 VDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|167754411|ref|ZP_02426538.1| hypothetical protein ALIPUT_02705 [Alistipes putredinis DSM 17216]
 gi|167659036|gb|EDS03166.1| hypothetical protein ALIPUT_02705 [Alistipes putredinis DSM 17216]
          Length = 461

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 151/464 (32%), Positives = 239/464 (51%), Gaps = 27/464 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDG 58
           MN   +TI A +T +   AI++IRLSGP     C+ I + +KP    A     +G  +DG
Sbjct: 1   MNTSTDTIVAPATASG-GAIAVIRLSGPEAIACCDRIFRGRKPLAEAAGHTLHYGEVIDG 59

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            R +D  +  ++ +P S+TGED+ E   HG   +V+ I+  L      R+A PGEF+ RA
Sbjct: 60  DRTIDDVVAAIYRAPHSYTGEDAVELSCHGSPYIVSEII-ALLLRSGARMAQPGEFTIRA 118

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F  G++DL +AE++ADLI+S++     ++   M G  S+  G   D+L  + S +E +LD
Sbjct: 119 FLAGRMDLAQAEAVADLIASDSRASHAMASTQMRGGYSAALGALRDELLQLASLLELELD 178

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE EDVQ      +   +  ++++I+      +LG  I+ G  + I+G  N GKS+L N
Sbjct: 179 FSE-EDVQFADRARLREMMHRIESEITRLTDSFRLGNTIKKGVAVAIVGEPNVGKSTLLN 237

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ A+V+DI GTTRD +   L+++G L +  DTAG+ +T D +E+ GI RT   + 
Sbjct: 238 RLLGEERALVSDIAGTTRDTIEETLNIDGVLFRFIDTAGLHDTADRLEQMGIDRTQEMIR 297

Query: 298 NADLILLLKEINS--KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-------------- 341
            A ++L + +        I        + I  K D       E                 
Sbjct: 298 RAQIVLQVVDATCPIPPAIQITSEQTRLLIVNKCDSPDARITESKVSSGCGIEYRVSSAN 357

Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLN 396
                IS+ TGEG+E L+ ++++            + S+ RHL  L Q +  L  A +  
Sbjct: 358 PDTLFISAKTGEGIERLLARLRATFDTGSIYDGDPVISNSRHLEALRQALDALHRALTAL 417

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + D   D+++E++R     LG ITG +  + +L  IFSKFCIGK
Sbjct: 418 DDDRSADLLSEDIRQVIHHLGTITGEITNDDILSQIFSKFCIGK 461


>gi|160946598|ref|ZP_02093801.1| hypothetical protein PEPMIC_00556 [Parvimonas micra ATCC 33270]
 gi|158446982|gb|EDP23977.1| hypothetical protein PEPMIC_00556 [Parvimonas micra ATCC 33270]
          Length = 468

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 142/456 (31%), Positives = 235/456 (51%), Gaps = 25/456 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLDGRI 60
           TI A++T    S I I+RLSG     + +   K            R     + +  D  +
Sbjct: 16  TIVAIATATGESGIGIVRLSGEKSIDIVKNFFKPHDKKEIDKKSDRMMKYGHIYDKD-EL 74

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ ++    +P ++T E+  E   HGGI  +  +L  L       LA  GEF++RAF N
Sbjct: 75  IDEVMVCFMFAPHTYTRENVVEIFTHGGIVCLKRVLN-LCLENGADLAEKGEFTKRAFLN 133

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE + DLI ++TE   + ++  + G LS    ++ ++L  I SF+E  ++F+E
Sbjct: 134 GRLDLSQAEGVIDLIKAKTEFSHKSAINQLEGHLSKKIKEFREELLDILSFVEYSINFTE 193

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   +      V+     L  ++   + +   G+I+++G  + I+G  N GKSSL N + 
Sbjct: 194 DMQ-EELPFDNVILKTEKLMAEMEELLGESNKGKILKDGINVSIIGKPNVGKSSLLNRIL 252

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVTDI GTTRD++  D++L G  + I+DTAGIR+T D+VEK G++++    EN+D
Sbjct: 253 RQERAIVTDIAGTTRDLIKEDIELSGIKLNINDTAGIRDTADVVEKIGVQKSIEASENSD 312

Query: 301 LILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------DHLISSF 346
           L L+L +I+       +K I+       I I  K DL     EE            IS+ 
Sbjct: 313 LNLVLFDISRELDEEDEKIINLANTTKSIGILNKVDLDKKLNEEKLKEKVNFELIEISAL 372

Query: 347 TGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDI 404
             EG+ +L   I  +  +   ++   ++ ++ RH   L  ++ YL+    + K+   +D 
Sbjct: 373 KNEGISKLEQAIIDMFFDGKIEIKDKALITNVRHENSLKSSLEYLKSFYADLKNMVPIDC 432

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +LR A   LG+I G    E +LD IFS FCIGK
Sbjct: 433 CEVDLRRAYEVLGEIIGENISENILDNIFSNFCIGK 468


>gi|255033904|ref|YP_003084525.1| tRNA modification GTPase TrmE [Dyadobacter fermentans DSM 18053]
 gi|254946660|gb|ACT91360.1| tRNA modification GTPase TrmE [Dyadobacter fermentans DSM 18053]
          Length = 455

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 151/453 (33%), Positives = 241/453 (53%), Gaps = 19/453 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDG-RI 60
            ++E I A++T +   AI +IR+SG     +   + K K        ++ +     G  I
Sbjct: 7   RQQEVICALATPSGVGAIGVIRVSGLGSIAMVNSVFKGKNLENAESHTVHFGTIFSGDEI 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ VF +P SFT EDS E   HG   ++  IL+ L      R+A PGEF++RAF N
Sbjct: 67  IDEVLVTVFKTPRSFTKEDSVEISCHGSDYIIRQILKVLIL-KGARIAKPGEFTQRAFLN 125

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+ DL++AE++ADLI+++++   + ++  + G  S        +L H  S IE +LDF E
Sbjct: 126 GQFDLVQAEAVADLIAADSQASHKTALNQLRGGFSKKLASLRAELIHFASLIELELDFGE 185

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            EDV+     ++   I  L + I   IS    G  I+ G  + I+G  N GKS+L NAL 
Sbjct: 186 -EDVEFAQRDDLRRLIDALLSTIEPLISSFDFGNAIKEGVPVAIIGSPNVGKSTLLNALL 244

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT I GTTRDV+   + L+G   +  DTAGIRET D+VE  GI+R+   ++ AD
Sbjct: 245 NEEKAIVTSIAGTTRDVIEDTIVLDGLKFRFIDTAGIRETTDVVESIGIERSKAAMDKAD 304

Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY------DHLISSFTG 348
           +++ L +       N       P   + +F+  K+D+      E          IS+ T 
Sbjct: 305 IVIFLFDSAETLADNRALAALLPAGKEVLFVLNKTDINPLLASELSGDASDIIPISAHTQ 364

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAE 407
           + L  L +K+ S++  +      ++ ++ RH  HL +T   L ++ +        D +A+
Sbjct: 365 QNLPVLTSKLVSLVHGQAA--GDTVVTNLRHYEHLMKTSDSLTDVLNGLSLGVTGDFLAQ 422

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++RLA   LG+ITG +  + LL+ IFS+FCIGK
Sbjct: 423 DIRLALHHLGEITGTIATDDLLENIFSRFCIGK 455


>gi|188590674|ref|YP_001922717.1| tRNA modification GTPase TrmE [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500955|gb|ACD54091.1| tRNA modification GTPase TrmE [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 456

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 152/456 (33%), Positives = 253/456 (55%), Gaps = 19/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD- 57
            E +TI  ++T      +SIIR+SG     +   I   K        +  ++RY   ++ 
Sbjct: 2   REFDTICGIATPIGEGGVSIIRISGSKALDIISKIFVGKNNIDLKQMKTYTMRYGHIIEF 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ++D+ ++     P S+T ED  E + HGG+   N ++ ++ K    R+A PGEF++
Sbjct: 62  ESKDVIDEVIISYMKGPHSYTTEDIIEINCHGGVISTNSVMNQVIKA-GARVAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I ++T++  + ++    G LS    +    L +  + IE  
Sbjct: 121 RAFLNGRIDLSQAEAVIDIIKAKTDLSMKSALMQSGGALSMQIKEIRQYLLNTLALIEYG 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFL-KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +DF+E+++  + +    + D +      +   +     G+IIR+G  +VI+G  N GKSS
Sbjct: 181 VDFTEDDEDIDDTLVLRVKDGIKTTILKVRELLKGADEGKIIRDGLNVVIIGKPNVGKSS 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L K+  AIVTDIPGTTRD++   L+++G  +KI+DTAGIRET+D VEK G++R+  
Sbjct: 241 LLNVLLKEKRAIVTDIPGTTRDIIEEYLNIDGIPIKITDTAGIRETEDTVEKIGVERSRE 300

Query: 295 EVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTE---EYDHLISS 345
           ++E ADLI+L+ + +       K+ I+  K+ + I +  K+DL     +   +    IS+
Sbjct: 301 KIEEADLIILILDSSRDLEEEDKEIINTIKDKNHIVLLNKTDLDRKIADIDLDNQIKISA 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDI 404
            TG G+EEL NKIK +  +        I S+ RH   L +++   E+A      +  LD+
Sbjct: 361 KTGYGIEELKNKIKELFFSGDINSESLIVSNVRHKQALYRSLENCEVALDRVNANEFLDL 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  +  A  +LG+ITG    E +L+ IFS+FC+GK
Sbjct: 421 ISIYVTSAMKALGEITGDELEEDVLNKIFSEFCVGK 456


>gi|51473927|ref|YP_067684.1| tRNA modification GTPase TrmE [Rickettsia typhi str. Wilmington]
 gi|81389958|sp|Q68VZ0|MNME_RICTY RecName: Full=tRNA modification GTPase mnmE
 gi|51460239|gb|AAU04202.1| thiophene and furan oxidation protein; tRNA modification GTPase
           [Rickettsia typhi str. Wilmington]
          Length = 445

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 152/448 (33%), Positives = 251/448 (56%), Gaps = 17/448 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64
           ETIFA S+    + +++ R+SGP   +V + +  +K   PR    +     +   ++D  
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKDFKPRLMYYQQIISPETNELIDNA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F  P SFTGED  E H HG  A+   ++  L  + ++RLA  GEF++RAF N K D
Sbjct: 62  MVVYFKLPNSFTGEDVVEIHTHGSKAISIMLINTLLNIDDIRLAEAGEFTKRAFLNNKFD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE +ADLI++ET MQ R ++   +G L  LY  W ++L  I + +EA LDF + ED+
Sbjct: 122 LTAAEGIADLINAETIMQHRQAVRQANGGLEELYNNWRNQLLKIIALLEAYLDFPD-EDI 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +    +V N    + N+IS++++  + GE++ NG K+ I+G  N GKSSL N L ++++
Sbjct: 181 PDSILNDVNNTHKNIVNEISNYLNDNRRGELLNNGLKLAIIGPPNTGKSSLLNFLMQRNI 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIV++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + A++ +
Sbjct: 241 AIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRAESTDIIEREGIKRAINSAKTANIKI 300

Query: 304 LLKEINSKK-----EISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---SSFTGEGLE 352
           ++ +          +I    + + I I  K DL      +  E  +     S      L 
Sbjct: 301 IMFDAEKLDLSINNDIIDLIDENTIVIINKIDLIEPSQIFPIEKKYKCLRVSVKNNIALS 360

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            ++  I++I  N          +++RH ++L Q + +L   +L   D  L +  E++R+ 
Sbjct: 361 SILKNIENIAENIAGFTETPYITNQRHRHYLKQALSHLMAFNL---DNDLVLATEDMRMT 417

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +G ITG ++VE++L+ IF  FCIGK
Sbjct: 418 ARCIGLITGVINVEEILNEIFKNFCIGK 445


>gi|193082993|ref|NP_001122327.1| tRNA modification GTPase GTPBP3, mitochondrial isoform III [Homo
           sapiens]
          Length = 471

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 167/446 (37%), Positives = 246/446 (55%), Gaps = 21/446 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R             
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARESCN------F 328

Query: 305 LKEINSKKEISFPKN--IDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELIN 356
           L  + +      P +     + +  KSDL S         +      S  TGEGL+ L+ 
Sbjct: 329 LATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLDGLLE 388

Query: 357 KIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
            ++  L+           + +  RH +HL   +  L       +   L + AE LR+A  
Sbjct: 389 ALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK---QSKDLALAAEALRVARG 445

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            L ++TG    E++LDIIF  FC+GK
Sbjct: 446 HLTRLTGGGGTEEILDIIFQDFCVGK 471


>gi|257061940|ref|YP_003139828.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8802]
 gi|256592106|gb|ACV02993.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8802]
          Length = 460

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 145/456 (31%), Positives = 233/456 (51%), Gaps = 25/456 (5%)

Query: 6   ETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           ETI A++T       +I I+RLSG     +   +        +  S R  +G        
Sbjct: 9   ETIAAIATAIVPQQGSIGIVRLSGNQAVTIARQLFT-APGQQKWESHRILYGYIRHPQTQ 67

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+   +    +LA PGEF+ RAF
Sbjct: 68  QVIDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQLCVE-QGAKLAQPGEFTLRAF 126

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AES+A L+ + +    ++++ G+ G+L+    Q  D+   I + +EA +DF
Sbjct: 127 LNGRIDLTQAESVAQLVGARSPQASQMALAGLQGKLAQPIRQLRDRCLDILAEVEARIDF 186

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D+       ++  +  +   + + ++    GE++R G K+ I+G  N GKSSL NA
Sbjct: 187 EE--DLPPLDENSIIEGLQDILTHVQALLATADRGELLRTGLKVAIVGRPNVGKSSLLNA 244

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            +  D AIVTD+PGTTRDV+   L + G  +++ DTAGIRET D VEK G++R+      
Sbjct: 245 WSCSDRAIVTDLPGTTRDVVESQLIVGGIPIQVLDTAGIRETADRVEKLGVERSRHVASQ 304

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDL-----YSTYTE-EYDHLISSF 346
           ADL+LL  +         +      ++   I +  K DL      S   + +      + 
Sbjct: 305 ADLVLLTIDAQMGWTTEDEAIYQQVQHRPLILVINKIDLGLADSLSFIPQIKQIVKTVAA 364

Query: 347 TGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDI 404
             +G+E+L   I + + ++  +     +  ++R    L++    LE           LD 
Sbjct: 365 QNQGIEQLEKAILASVESQNIQAANLDLAINQRQAAVLTRAKIALEQVQETIVNQLPLDF 424

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 425 WTIDLRAAIQALGEITGEEITESVLDRIFSRFCIGK 460


>gi|251778655|ref|ZP_04821575.1| tRNA modification GTPase TrmE [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082970|gb|EES48860.1| tRNA modification GTPase TrmE [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 456

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 152/456 (33%), Positives = 254/456 (55%), Gaps = 19/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD- 57
            E +TI  ++T      +SIIR+SG     +   I   K        +  ++RY   ++ 
Sbjct: 2   REFDTICGIATPIGEGGVSIIRISGSKALDIISKIFVGKNNIDLKQMKTYTMRYGHIIEL 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ++D+ ++     P S+T ED  E + HGG+   N ++ ++ K    R+A PGEF++
Sbjct: 62  ESKDVIDEVIISYMKGPHSYTTEDIIEINCHGGVISTNSVMNQVIKA-GARVAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I ++T++  + ++    G LS+   +    L +  + IE  
Sbjct: 121 RAFLNGRIDLSQAEAVIDIIKAKTDLSMKSALMQSGGALSTQIKEIRQYLLNTLALIEYG 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFL-KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +DF+E+++  + +    + D +      +   +     G+IIR+G  +VI+G  N GKSS
Sbjct: 181 VDFTEDDEDIDDTLVLRVKDGIKTTILKVKELLKGADEGKIIRDGLNVVIIGKPNVGKSS 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L K+  AIVTDIPGTTRD++   L+++G  +KI+DTAGIRET+D VEK G++R+  
Sbjct: 241 LLNVLLKEKRAIVTDIPGTTRDIIEEYLNIDGIPIKITDTAGIRETEDTVEKIGVERSRE 300

Query: 295 EVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTE---EYDHLISS 345
           ++E ADLI+L+ + +       K+ I+  K+ + I +  K+DL     +   +    IS+
Sbjct: 301 KIEEADLIILILDSSRDLEEEDKEIINTIKDKNHIVLLNKTDLDRKIADIDLDNQIKISA 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDI 404
            TG G+EEL NKIK +  +        I S+ RH   L +++   E+A      +  LD+
Sbjct: 361 KTGYGIEELKNKIKELFFSGDINSESLIVSNVRHKQALYRSLENCEVALDRVNANEFLDL 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  +  A  +LG+ITG    E +L+ IFS+FC+GK
Sbjct: 421 ISIYVTSAMKALGEITGDELEEDVLNKIFSEFCVGK 456


>gi|72383392|ref|YP_292747.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. NATL2A]
 gi|123620473|sp|Q46HI4|MNME_PROMT RecName: Full=tRNA modification GTPase mnmE
 gi|72003242|gb|AAZ59044.1| tRNA modification GTPase trmE [Prochlorococcus marinus str. NATL2A]
          Length = 464

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 164/464 (35%), Positives = 250/464 (53%), Gaps = 29/464 (6%)

Query: 2   NHEKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--- 56
           +  ++TI A++T       +I+ IR+SG S  +  + I          ++ +  +G    
Sbjct: 5   SPTEDTIAAIATAVSPGQGSIAAIRISGSSAIETSKNIVD-VPGIQDWSTHKVLYGHVTE 63

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               + +D+ L++V   P SFTGED  E H HGGI  V  ILE +   P++R A PGEFS
Sbjct: 64  ENRKKYIDEVLILVMKGPRSFTGEDVVEIHCHGGIIPVQKILERILAFPSVRRAEPGEFS 123

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RA  NG++ L +AES+++L+S+ +     L++ G+ G + +       +L    + IEA
Sbjct: 124 QRAVLNGRLSLTQAESISELVSARSRKAAELAINGIEGNIQTTIQSIRKRLIEQLTEIEA 183

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF E  D+     K V N+I+ +K D++  I   K G  +R+G K+ + G  N GKSS
Sbjct: 184 RIDFEE--DLPLLDEKHVKNEIVAIKKDLNELIDNAKRGSWVRSGLKVALTGKPNVGKSS 241

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L+K++ AIVTD+PGTTRD+L  ++ LEG  V   DTAG+R+T DI+EK GI RT  
Sbjct: 242 LMNRLSKQEKAIVTDLPGTTRDILESEIILEGIPVTFIDTAGLRDTKDIIEKIGISRTKK 301

Query: 295 EVENADLILLLKE-----INSKKEI--SFPKNIDFIFIGTKSDLYST----------YTE 337
            + +ADLI+L+ +      N  + I    P NI  + +G KSDL +             +
Sbjct: 302 TLIHADLIILIFDYSSGWTNEDESILKQLPINIPLLIVGNKSDLTNDQSFEKVPKYILKK 361

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLN 396
           E   +IS+ TG G ++LIN +        +     I  ++R L     T++ LE    + 
Sbjct: 362 ENLVIISAKTGNGEDDLINYLLKK-CGSSQTHGLDIALNERQLDLAKSTMKSLENINKVF 420

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++    D    +LR A   LG++TG    E LLD IFSKFCIGK
Sbjct: 421 DEKLPWDFWTIDLRQAINYLGELTGEDLTESLLDNIFSKFCIGK 464


>gi|237743154|ref|ZP_04573635.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 7_1]
 gi|229433450|gb|EEO43662.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 7_1]
          Length = 455

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 143/454 (31%), Positives = 239/454 (52%), Gaps = 21/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLDGR-IL 61
           +TI A+ST      ISI+R+SG     + E I + K       +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRPKNKKVSELKNCSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ E 
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPE- 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E + +   + +++++     +I   +S    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 182 EGIDDPVPENLVDNLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDI+E  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENIGVEKSKELINSADL 301

Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGE 349
           IL + + + K +               I I  K D+            E    IS+ +  
Sbjct: 302 ILYVIDTSRKIDEEDFRIYDIINTDKVIGILNKIDIKKDIDLSKFSKIEKWVEISALSKI 361

Query: 350 GLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIA 406
           G++ L N+I   + N+  +      + ++ RH   L +T    L +    +K   +D++A
Sbjct: 362 GIDNLENEIYKFIMNENIEDSSQKLVITNVRHKSALEKTNEALLNIIETIDKGFPMDLMA 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 422 VDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|310779689|ref|YP_003968022.1| tRNA modification GTPase trmE [Ilyobacter polytropus DSM 2926]
 gi|309749012|gb|ADO83674.1| tRNA modification GTPase trmE [Ilyobacter polytropus DSM 2926]
          Length = 455

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 136/456 (29%), Positives = 234/456 (51%), Gaps = 22/456 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGRI 60
            +TI A+ST      I I+R+SG    ++   + + K        +  ++ Y    DG +
Sbjct: 2   FDTIAAISTPRGEGGIGIVRMSGDDSIKILSKVFRAKSEKKVEDLKSHTINYGHIYDGEV 61

Query: 61  L-DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           L D+ ++     P+++T ED  E + HGG  +   ILE L K    R+A  GEF+RRAF 
Sbjct: 62  LLDEVMVSFLKGPKTYTREDIVEINCHGGYLITEKILELLLK-KGARIAEQGEFTRRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++ D+I  +T+    LS+  + G+L +  G     +  + + +   LD+ 
Sbjct: 121 NGRLDLTQAEAVMDIIHGKTDKSISLSLNQLRGDLKNQIGILKKMILDVAAHVNVVLDYP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E E + +     +++++L +       I+    G++I+ G K  I+G  N GKSSL N +
Sbjct: 181 E-EGIDDPLPDNLMDNLLEVLKSSDVLIASYDKGKMIKEGVKTAIVGKPNVGKSSLLNTI 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K++ AIVT I GTTRD++   ++L+G  + + DTAGIR TDD++E  G+K++   ++ A
Sbjct: 240 LKEERAIVTHIAGTTRDIIEEVINLKGIPLILVDTAGIRTTDDVIENIGVKKSEDLIDKA 299

Query: 300 DLILLLKEINSKKEISFPKNID------FIFIGTKS------DLYSTYTEEYDHLISSFT 347
           DL+L + + + + E    K  D       I I  K       DL           IS+  
Sbjct: 300 DLVLFVVDGSRELEEEDIKVHDQLNADKVIGILNKIDMERKLDLTPLNKVGKWIEISATE 359

Query: 348 GEGLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRYLE-MASLNEKDCGLDI 404
             G+  + ++I   + +   +      I ++ RH   L +T + +E +         +D+
Sbjct: 360 NLGISNMEDEIYKYIISGQVEDSSQKLIITNVRHKSALEKTKQAVENILETINMGLPMDL 419

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A +L+ A  SL ++TG +  E LLD +FS FC+GK
Sbjct: 420 MAVDLKEALDSLSEVTGEISTEDLLDHVFSNFCVGK 455


>gi|187932414|ref|YP_001887734.1| tRNA modification GTPase TrmE [Clostridium botulinum B str. Eklund
           17B]
 gi|187720567|gb|ACD21788.1| tRNA modification GTPase TrmE [Clostridium botulinum B str. Eklund
           17B]
          Length = 456

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 151/456 (33%), Positives = 254/456 (55%), Gaps = 19/456 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD- 57
            E +TI  ++T      +SIIR+SG     +   I   K        +  ++RY   ++ 
Sbjct: 2   REFDTICGIATPIGEGGVSIIRISGSKALDIISKIFVGKNNIDLKQMKTYTMRYGHIIEL 61

Query: 58  --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ++D+ ++     P S+T ED  E + HGG+   N ++ ++ K   +R+A PGEF++
Sbjct: 62  ESKDVIDEVIISYMKGPHSYTTEDIIEINCHGGVISTNSVMNQVIKA-GVRVAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I ++T++  + ++    G LS    +    L +  + IE  
Sbjct: 121 RAFLNGRIDLSQAEAVIDIIKAKTDLSMKSALMQSGGALSKQIKEIRQYLLNTLALIEYG 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFL-KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +DF+E+++  + +    + D +      +   +     G+IIR+G  +VI+G  N GKSS
Sbjct: 181 VDFTEDDEDIDDTLVLRVKDGIKTTILKVKELLKGADEGKIIRDGLNVVIIGKPNVGKSS 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L K+  AIVTD+PGTTRD++   L+++G  +KI+DTAGIRET+D VEK G++R+  
Sbjct: 241 LLNVLLKEKRAIVTDVPGTTRDIIEEYLNIDGIPIKITDTAGIRETEDTVEKIGVERSRE 300

Query: 295 EVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTE---EYDHLISS 345
           ++E ADLI+L+ + +       K+ I+  K+ + I +  K+DL     +   +    IS+
Sbjct: 301 KIEEADLIILILDSSRELEEEDKEIINTIKDKNHIVLLNKTDLDRRIADIDLDNQINISA 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDI 404
            TG G+EEL NKIK +  +        I S+ RH   L +++   E+A      +  LD+
Sbjct: 361 KTGYGIEELKNKIKELFFSGDINSESLIVSNVRHKQALYRSLENCEIALDRVNANEFLDL 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+  +  A  +LG+ITG    E +L+ IFS+FC+GK
Sbjct: 421 ISIYVTSAMKALGEITGDELEEDVLNKIFSEFCVGK 456


>gi|15893098|ref|NP_360812.1| tRNA modification GTPase TrmE [Rickettsia conorii str. Malish 7]
 gi|21363014|sp|Q92GE8|MNME_RICCN RecName: Full=tRNA modification GTPase mnmE
 gi|15620303|gb|AAL03713.1| possible thiophene and furan oxidation protein thdF [Rickettsia
           conorii str. Malish 7]
          Length = 445

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/448 (34%), Positives = 248/448 (55%), Gaps = 17/448 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDKG 64
           ETIFA S+    + +++ R+SGP   +V + +  +K    R    +         ++D  
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKDFKSRLMYYQQITVPETKELIDNV 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F SP SFTGED  E H HG  A+   +   L  +  +RLA  GEF++RAF N K D
Sbjct: 62  MVVYFKSPGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKFD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE +ADLI++ET MQ + ++   SG+L +LY  W  +L  + S +EA +DF + ED+
Sbjct: 122 LTAAEGIADLINAETIMQHKQAIRQASGKLEALYNNWRSQLLKMLSLLEAYIDFPD-EDI 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +    EV N    L N IS +++  + GE++R+G K+ I+G  N GKSSL N L ++D+
Sbjct: 181 PDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDI 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIV++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + AD+ +
Sbjct: 241 AIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTADIKI 300

Query: 304 LLKEINS-----KKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---SSFTGEGLE 352
           ++ +         ++I    + + I I  K DL      ++ E  +     S      L 
Sbjct: 301 IMFDAEKLDSSINEDIINLIDENTITIINKIDLIEASKIFSIENKYKCLRVSVKNNIALS 360

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            ++  I++I  N          +++RH  +L Q + +L   SL   D  L +  E++R+ 
Sbjct: 361 SILKNIENIAENMAGFTETPYITNQRHRNYLQQALSHLTAFSL---DNDLVLATEDIRMT 417

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +G ITG ++VE++L  IF  FCIGK
Sbjct: 418 ARCIGAITGVINVEEILGEIFKNFCIGK 445


>gi|163732963|ref|ZP_02140407.1| tRNA modification GTPase TrmE [Roseobacter litoralis Och 149]
 gi|161393498|gb|EDQ17823.1| tRNA modification GTPase TrmE [Roseobacter litoralis Och 149]
          Length = 428

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 174/437 (39%), Positives = 260/437 (59%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +T+FA+++    + +S+IR+SG + + V E +C    P PRK+++R+    DG ++D+ L
Sbjct: 2   DTVFALASAQGRAGVSVIRISGHTAWAVAEHLCG-ALPEPRKSAVRFIRSQDGTVIDQAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED  EFHVHG IAVV  IL EL+   + R+A  GEF+RRA ENGK+DL
Sbjct: 61  VLAFKGPHSFTGEDVVEFHVHGSIAVVRAILAELSDQGSARMAEAGEFTRRALENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ ++  ++G L      W  KL    + IEA +DF++ EDV 
Sbjct: 121 SQVEGLADLIDAETEAQRKQAVRVLTGSLGDKVEIWRTKLIRAAALIEATIDFAD-EDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV + +  +  DI S I+   + E IR+G+++ ++G  NAGKS+L N L+ +D A
Sbjct: 180 VDVTPEVTSLLKDVSCDIESEIAGTHVAERIRSGFEVALVGAPNAGKSTLLNKLSGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++I GTTRDV+ + +DL G  V   DTAG+R++ D +EK GI+R      +ADL + L
Sbjct: 240 ITSEIAGTTRDVIEVRMDLGGLPVTFLDTAGLRQSTDEIEKIGIERAIARARDADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            + + K  I  P   D   I  K DL      E D  IS  TG+G+ EL+ KI +I   +
Sbjct: 300 SKPSEKLLID-PVEDDIQLIP-KVDLLP----ETDLGISGKTGQGIPELLEKIGTIFGKR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCV 423
                  + +H+RH + + + ++ L+ +  +L       DI A+ LR A  SL  + G +
Sbjct: 354 VS--GVGLATHERHRFAMQRALKDLDNSFDALLRGPEFYDITAQELRSAIRSLETLVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           D E LLD IFS FC+GK
Sbjct: 412 DAENLLDEIFSSFCLGK 428


>gi|254488767|ref|ZP_05101972.1| tRNA modification GTPase TrmE [Roseobacter sp. GAI101]
 gi|214045636|gb|EEB86274.1| tRNA modification GTPase TrmE [Roseobacter sp. GAI101]
          Length = 428

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 167/437 (38%), Positives = 251/437 (57%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA +T    + + ++R+SGP  F + E I     P  R+A++R   G DG ++D  L
Sbjct: 2   DTIFAQATAQGRAGVCVVRISGPQAFDIAEKIA-FPLPEVRQAAVRPIIGQDGGVIDSAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED  E H+HG IAVV  +L  L+  P+ RLA PGEF+RRA ENGK+DL
Sbjct: 61  VLTFKGPSSFTGEDVVELHLHGSIAVVRAVLALLSTFPDTRLAEPGEFTRRAMENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E L DLI +ETE QR+ ++  +SG L      W +KL    + +E  +DF++ EDV 
Sbjct: 121 TQVEGLGDLIEAETEAQRKQALRVLSGHLGQRVDAWREKLIRAAALLEVTIDFAD-EDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV   +  + +D+   I+     E IR G+++ I+G  NAGKS+L NALA +D A
Sbjct: 180 VDVSPEVRGLLRDVNDDLLKEIAGTHTAERIRTGFEVAIIGRPNAGKSTLLNALAGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + + GTTRDV+ + +DL G  V + DTAG+R+  D VE  GI+R      +ADL + L
Sbjct: 240 ITSAVAGTTRDVIEVRMDLGGLPVTLLDTAGLRDGADEVEAIGIERALKRAADADLRIFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E    +++      + I +  K+DL  +         S  TG+G+ +LI+ +++IL   
Sbjct: 300 VE--DDEDLPVAALPEDIRMRPKADLRDSAEGAI----SGTTGQGVSQLISTVQAIL--G 351

Query: 366 FKKLPFSIPSHKRHLYHLSQTVR--YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            + L   + +H+RH   L +      + M+ L+      DI +E LR +  +L  + G +
Sbjct: 352 ARSLTAGLATHERHRVALQKAADGLSVSMSVLDHGPDQYDIASEELRHSIRALEALVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LLD+IFS FC+GK
Sbjct: 412 DVENLLDVIFSSFCLGK 428


>gi|315223865|ref|ZP_07865713.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea F0287]
 gi|314946195|gb|EFS98196.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea F0287]
          Length = 472

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 143/465 (30%), Positives = 242/465 (52%), Gaps = 31/465 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL---DGR 59
            +TI A++T +   AI++IRLSG     + + + K    K      S     G      +
Sbjct: 10  NDTIVALATASGIGAIAVIRLSGKEAIAIADSVFKPYTGKSLLEAPSHTVHLGTLESKDQ 69

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ L  +F   +S+TGE   EF  HG   +V  +++ L      RLA+ GEF++RAF 
Sbjct: 70  VIDECLATIFKGTKSYTGEPVVEFSCHGSNYIVEEVIK-LCLAKGARLADAGEFTKRAFL 128

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+ L +AE++ADLI+S+++   +++++ M G  +S       +L +  S IE +LDFS
Sbjct: 129 NGKLALNQAEAVADLIASDSKASHQVALQQMRGGFTSEIEGLRQELLNFTSLIELELDFS 188

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV+     +    +  +K  + S +    +G +++NG  + I+G  NAGKS+L NAL
Sbjct: 189 E-EDVEFADRTQFKLLLSTIKTTVLSLLQSFSVGNVLKNGIPVAIVGKPNAGKSTLLNAL 247

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DI GTTRD +   L + G   +  DTAGIR+T D +E  G+++   ++E A
Sbjct: 248 LNEERAIVSDIAGTTRDTIEETLHIGGIAFRFIDTAGIRDTQDQIEAIGVQKAKEKIEKA 307

Query: 300 DLILLLKEI---NSKKEISFPK-----NIDFIFIGTKSDL-----YSTYTEEYDH----- 341
            ++L L ++   ++++ ISF K        F+ +  K+DL      + +  E        
Sbjct: 308 SIVLYLFDVKDSSAQEIISFVKENYREGTKFVLLHNKTDLSTESNITPFDNEILQSLKGY 367

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                 IS+  G  +  L + +     +       +I ++ RH   L  T++ +E     
Sbjct: 368 TDTLLRISAKEGNNILALKDFLSHYAQSLNNTGKATIITNIRHYEALHNTLQSIERIEQG 427

Query: 397 EK-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +     D++A ++R A   LG ITG V  +++L  IFS+FCIGK
Sbjct: 428 LQLQLSGDLLAIDIREALYHLGTITGAVSNDEVLGNIFSRFCIGK 472


>gi|16127986|ref|NP_422550.1| tRNA modification GTPase TrmE [Caulobacter crescentus CB15]
 gi|239977483|sp|P0CAX2|MNME_CAUCR RecName: Full=tRNA modification GTPase mnmE
 gi|239977563|sp|B8GW34|MNME_CAUCN RecName: Full=tRNA modification GTPase mnmE
 gi|13425532|gb|AAK25718.1| thiophene and furan oxidation protein ThdF [Caulobacter crescentus
           CB15]
          Length = 446

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 174/449 (38%), Positives = 266/449 (59%), Gaps = 19/449 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T A  SA++++R+SGP   ++   +C +  P PR AS+R     +G  LD  L
Sbjct: 3   DTIFALATAAGRSAVAVVRVSGPRSSEIAAALCGR-LPSPRLASVRTLK-HNGVALDAAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P S+TGEDS EFHVHGG AVV  +L  L+++   RLA  GEF+RRAFENGK+DL
Sbjct: 61  VLRFEKPASYTGEDSVEFHVHGGRAVVEALLAALSEL-GARLAEAGEFTRRAFENGKLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE +ADLI +ETE QRR ++  + G LS  Y +W D L    + +EA +DF + ED+ 
Sbjct: 120 AQAEGVADLIDAETEAQRRQALGQVGGALSQRYDRWRDLLVQALAMLEAAVDFPD-EDLP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              ++     +  L  ++++ ++    G  +R+G++I ++G  NAGKS+L N LA++D A
Sbjct: 179 EEVAERARPGLRQLSAELNAALADVSRGRRVRDGFRIALIGAPNAGKSTLLNGLAERDAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTD+ GTTRDV+ + L L GY V ++DTAGIRET D++E EG++R     E ADL L +
Sbjct: 239 IVTDVAGTTRDVIEVPLVLGGYKVLVADTAGIRETADVIEAEGVRRAKAWAEAADLRLWV 298

Query: 306 KE-INSKKEISFPKNIDF--IFIGTKSDLYSTYTEEYDHLISSFTG-----------EGL 351
            +  + K+  + P+ I      I  K+D+       +     +  G           EG 
Sbjct: 299 VDGFHVKQADARPEAIRVGDWLILNKTDIADADASAHVAERWAGEGLTVLHIAGTSAEGP 358

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           E L   + S +++      F   +  RH   LS+   YLE A L++    +++ AE++RL
Sbjct: 359 EALRAALASHVADALSGAEFPAATRLRHAERLSEARSYLERA-LSDVGLEVELAAEDVRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A+ +L +I+G +D E +L  +FS FCIGK
Sbjct: 418 AARALERISGRIDPEDVLGRVFSTFCIGK 446


>gi|256820731|ref|YP_003142010.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea DSM 7271]
 gi|256582314|gb|ACU93449.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea DSM 7271]
          Length = 472

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 143/465 (30%), Positives = 242/465 (52%), Gaps = 31/465 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL---DGR 59
            +TI A++T +   AI++IRLSG     + + + K    K      S     G      +
Sbjct: 10  NDTIVALATASGVGAIAVIRLSGKEAITIADSVFKPHSGKSLLEAPSHTVHLGTLESKDQ 69

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ L  +F   +S+TGE   EF  HG   +V  +++ L      RLA+ GEF++RAF 
Sbjct: 70  VIDECLATIFKGTKSYTGEPVVEFSCHGSNYIVEEVIK-LCLAKGARLADAGEFTKRAFL 128

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+ L +AE++ADLI+S+++   +++++ M G  +S       +L +  S IE +LDFS
Sbjct: 129 NGKLALNQAEAVADLIASDSKASHQVALQQMRGGFTSEIEGLRQELLNFTSLIELELDFS 188

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV+     +    +  +K  + S +    +G +++NG  + I+G  NAGKS+L NAL
Sbjct: 189 E-EDVEFADRTQFKTLLSTIKTIVLSLLQSFSVGNVLKNGIPVAIVGKPNAGKSTLLNAL 247

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DI GTTRD +   L + G   +  DTAGIR+T D +E  G+++   ++E A
Sbjct: 248 LNEERAIVSDIAGTTRDTIEETLHIGGIAFRFIDTAGIRDTQDQIEAIGVQKAKEKIEKA 307

Query: 300 DLILLLKEI---NSKKEISFPK-----NIDFIFIGTKSDL-----YSTYTEEYDH----- 341
            ++L L ++   ++++ ISF K        F+ +  K+DL      + +  E        
Sbjct: 308 SIVLYLFDVKDSSAQEIISFVKENYREGTKFVLLHNKTDLSTESNITPFDNEILQSLQGY 367

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL- 395
                 IS+  G  +  L + +     +       +I ++ RH   L  T++ +E     
Sbjct: 368 TDTLLRISAKEGNNILALKDFLSHYAQSLNNTGKATIITNIRHYEALHNTLQSIERIEQG 427

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +     D++A ++R A   LG ITG V  +++L  IFS+FCIGK
Sbjct: 428 IQLQLSGDLLAIDIREALYHLGSITGTVSNDEVLGNIFSRFCIGK 472


>gi|119605005|gb|EAW84599.1| GTP binding protein 3 (mitochondrial), isoform CRA_c [Homo sapiens]
          Length = 498

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 167/451 (37%), Positives = 246/451 (54%), Gaps = 26/451 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 57  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 116

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 117 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 176

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH-----IRSFIEADLDFS 179
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT        + +EA +DF 
Sbjct: 177 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKASPPFALAHVEAYIDFG 236

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+++++    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L
Sbjct: 237 EDDNLEEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLL 296

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           ++K V+IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R        
Sbjct: 297 SRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARESCN-- 354

Query: 300 DLILLLKEINSKKEISFPKN--IDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGL 351
                L  + +      P +     + +  KSDL S         +      S  TGEGL
Sbjct: 355 ----FLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHLLLSCLTGEGL 410

Query: 352 EELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           + L+  ++  L+           + +  RH +HL   +  L       +   L + AE L
Sbjct: 411 DGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK---QSKDLALAAEAL 467

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 468 RVARGHLTRLTGGGGTEEILDIIFQDFCVGK 498


>gi|171913044|ref|ZP_02928514.1| putative tRNA modification GTPase [Verrucomicrobium spinosum DSM
           4136]
          Length = 451

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 226/452 (50%), Gaps = 18/452 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDGRI 60
            +TI A+ST    +AIS++RLSG    QV + + K K+      PR          +G +
Sbjct: 2   HDTIAAISTAFGEAAISVLRLSGEHALQVAQRVFKGKRVLEALEPRVQHFGNILDEEGAV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  LL  F +P S+TGED  E   HGGI V   I E L      R A  GEF++RAF N
Sbjct: 62  VDSVLLSHFRAPASYTGEDVVEISCHGGILVTRRIFE-LLMHHGARAAEAGEFTQRAFVN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ DLI +++EM  + + + + G L          L  + + +EA +DF +
Sbjct: 121 GKMDLTQAEAVMDLIHAQSEMALKAATQQLEGRLGKESEHLRADLIELLAHVEAYIDFPD 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+   +   +   +  +   + S +     G I+R+G + VI G  N GKSSL N L+
Sbjct: 181 -EDIDPDTGAAMQKRLASIHLRVGSLLDTAHHGRILRSGARTVICGEPNVGKSSLLNLLS 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIV+   GTTRD +   L + G    + DTAGIRE    +E+ GI RT  E+  AD
Sbjct: 240 GFDRAIVSAEAGTTRDTIEEVLHIHGLPFVLVDTAGIREGAGSIEQSGIDRTNREMARAD 299

Query: 301 LILLLKEINSKKEIS-----FPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEG 350
           +IL + + +  ++ +           ++ I  KSDL     +    E    L+S    EG
Sbjct: 300 VILEVVDGSLPRDAARRVPGLEDRRGYLLILNKSDLGLHPSWLPDVERGAILLSCENQEG 359

Query: 351 LEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQTVRYLEM-ASLNEKDCGLDIIAEN 408
           L+ L   ++  +          +   + RH     +    L   A+  ++    + +A  
Sbjct: 360 LDPLRAAMRDAVWTGAGAGNSQMVAINARHQACFQRAAESLVHGAAALKRGEAPEFVAVF 419

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LR A  ++G++TG VDVE++L  IFS+FCIGK
Sbjct: 420 LREAMEAVGEVTGRVDVEEILGAIFSRFCIGK 451


>gi|260437683|ref|ZP_05791499.1| tRNA modification GTPase TrmE [Butyrivibrio crossotus DSM 2876]
 gi|292809909|gb|EFF69114.1| tRNA modification GTPase TrmE [Butyrivibrio crossotus DSM 2876]
          Length = 456

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/458 (33%), Positives = 234/458 (51%), Gaps = 25/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFGL---DG 58
           +ETI A++TG   S I IIR+SG   F V + I    K KK      S    +G    + 
Sbjct: 2   RETIAAIATGMG-SGIGIIRISGEEAFSVIDKIFVPKKSKKKMSEVKSHTIHYGNIVFNN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ L++V  +P ++T ED+ E + HGG  V+  +LE + K    R A PGEF++RAF
Sbjct: 61  EIVDEVLVMVMAAPNTYTKEDTIEINCHGGSFVMKKVLEAVLKS-GARPAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I+S+ +   + S+  ++G+LS   G    ++ H  +FIEA LD 
Sbjct: 120 LNGRIDLSQAEAVIDIINSKNKYALKNSINLLNGKLSEQIGNLRAEIIHNVAFIEAALDD 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E   + NF  K       ++K      +     G++   G   VILG  NAGKSS+ N 
Sbjct: 180 PEHISLDNFGDKLENYVDKWVKTA-EKLLITVDNGKLFTQGINTVILGKPNAGKSSILNI 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L+ ++ AIVTDI GTTRD++   ++L G  + + DTAGIR T+DIVE  G+ +     E+
Sbjct: 239 LSGRERAIVTDIEGTTRDIIEEQINLNGITLNLIDTAGIRNTEDIVENIGVNKAKATAED 298

Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLIS 344
           ADLI+ + + + K +      +   KN   + +  KSDL            T     L+S
Sbjct: 299 ADLIMYVVDSSRKLDENDYEILKLIKNNKAVVLLNKSDLEPVITVDKMKELTNNRVFLVS 358

Query: 345 SFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGL 402
           +    GLEEL + I  + +            S++R    L   +  L +      +    
Sbjct: 359 AKENTGLEELTDYIVDMFTEGKIDFNDEVYISNERDKAALDNALESLRLVKRSINEGMPE 418

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D    +L  A   LGKI G    + L++ IFSKFC+GK
Sbjct: 419 DFYTIDLLNAYEELGKIIGESVEDDLVNEIFSKFCMGK 456


>gi|256846684|ref|ZP_05552140.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_36A2]
 gi|256717904|gb|EEU31461.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_36A2]
          Length = 455

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 143/454 (31%), Positives = 238/454 (52%), Gaps = 21/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLDGR-IL 61
           +TI A+ST      ISI+R+SG     + E I K K       +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFKPKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ E 
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPE- 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E + +   + +++++     +I   +S    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 182 EGIDDPVPENLVDNLKKASAEIRDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGE 349
           IL + + + + +               I I  K D+            E    IS+ +  
Sbjct: 302 ILYVIDTSREIDEEDFRIYDIINTDKVIGILNKIDIKKDIDLSRFPKIEKWIEISALSKM 361

Query: 350 GLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIA 406
           G++ L N+I   + N+  +      + ++ RH   L +T    L +    +    +D++A
Sbjct: 362 GIDNLENEIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEALLNIIETIDMGLPMDLMA 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 422 VDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|221236808|ref|YP_002519245.1| tRNA modification GTPase TrmE [Caulobacter crescentus NA1000]
 gi|220965981|gb|ACL97337.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Caulobacter crescentus NA1000]
          Length = 456

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 174/449 (38%), Positives = 266/449 (59%), Gaps = 19/449 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T A  SA++++R+SGP   ++   +C +  P PR AS+R     +G  LD  L
Sbjct: 13  DTIFALATAAGRSAVAVVRVSGPRSSEIAAALCGR-LPSPRLASVRTLK-HNGVALDAAL 70

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P S+TGEDS EFHVHGG AVV  +L  L+++   RLA  GEF+RRAFENGK+DL
Sbjct: 71  VLRFEKPASYTGEDSVEFHVHGGRAVVEALLAALSEL-GARLAEAGEFTRRAFENGKLDL 129

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE +ADLI +ETE QRR ++  + G LS  Y +W D L    + +EA +DF + ED+ 
Sbjct: 130 AQAEGVADLIDAETEAQRRQALGQVGGALSQRYDRWRDLLVQALAMLEAAVDFPD-EDLP 188

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              ++     +  L  ++++ ++    G  +R+G++I ++G  NAGKS+L N LA++D A
Sbjct: 189 EEVAERARPGLRQLSAELNAALADVSRGRRVRDGFRIALIGAPNAGKSTLLNGLAERDAA 248

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTD+ GTTRDV+ + L L GY V ++DTAGIRET D++E EG++R     E ADL L +
Sbjct: 249 IVTDVAGTTRDVIEVPLVLGGYKVLVADTAGIRETADVIEAEGVRRAKAWAEAADLRLWV 308

Query: 306 KE-INSKKEISFPKNIDF--IFIGTKSDLYSTYTEEYDHLISSFTG-----------EGL 351
            +  + K+  + P+ I      I  K+D+       +     +  G           EG 
Sbjct: 309 VDGFHVKQADARPEAIRVGDWLILNKTDIADADASAHVAERWAGEGLTVLHIAGTSAEGP 368

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           E L   + S +++      F   +  RH   LS+   YLE A L++    +++ AE++RL
Sbjct: 369 EALRAALASHVADALSGAEFPAATRLRHAERLSEARSYLERA-LSDVGLEVELAAEDVRL 427

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A+ +L +I+G +D E +L  +FS FCIGK
Sbjct: 428 AARALERISGRIDPEDVLGRVFSTFCIGK 456


>gi|256027561|ref|ZP_05441395.1| tRNA modification GTPase TrmE [Fusobacterium sp. D11]
 gi|289765520|ref|ZP_06524898.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D11]
 gi|289717075|gb|EFD81087.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D11]
          Length = 455

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 238/454 (52%), Gaps = 21/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLDGR-IL 61
           +TI A+ST      ISI+R+SG     + E I + K       +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRPKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ E 
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKITTIKKSVLDLAAHINVVLDYPE- 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E + +   + ++ ++     +I   +     G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 182 EGIDDPVPENLVENLKKASAEIKDLVLSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDI+E  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENIGVEKSKELINSADL 301

Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGE 349
           IL + +I+ + +               I I  K D+            E    IS+ +  
Sbjct: 302 ILYVIDISREIDEEDFRIYDIINTDKVIGILNKIDIKKDIDLSKFPKIEKWVEISALSKI 361

Query: 350 GLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIA 406
           G++ L N+I   + N+  +      + ++ RH   L +T    L +    +K   +D++A
Sbjct: 362 GIDNLENEIYKFIMNENIEDSSQKLVITNVRHKSALEKTNEALLNIIETIDKGFPMDLMA 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 422 VDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|239946722|ref|ZP_04698475.1| tRNA modification GTPase TrmE [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920998|gb|EER21022.1| tRNA modification GTPase TrmE [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 445

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/448 (34%), Positives = 250/448 (55%), Gaps = 17/448 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDKG 64
           ETIFA S+    + +++ R+SGP   +V + +  +K    R    +         ++D  
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKDFKSRLMYYQQITVPETKELIDNA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F SP SFTGED  E H HG  A+   ++  L  + ++RLA  GEF++RAF N K D
Sbjct: 62  MVVYFKSPGSFTGEDVVEIHTHGSKAISIMLINALLNIADIRLAEAGEFTKRAFLNNKFD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE +ADLI++ET MQ R ++   SG L  LY  W  +L  I S +EA +DF + ED+
Sbjct: 122 LTAAEGIADLINAETIMQHRQAIRQASGGLEELYNNWRSQLLKIISLLEAYIDFPD-EDI 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +    +V N    L N+IS++++  + GE++ +G K+ I+G  N GKSSL N L ++D+
Sbjct: 181 PDSVLNDVNNTHKNLVNEISNYLNDNRRGELLNSGLKLAIIGPPNVGKSSLLNFLMQRDI 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIV++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + AD+ +
Sbjct: 241 AIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTADIKI 300

Query: 304 LLKEINS-----KKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---SSFTGEGLE 352
           ++ +         ++I    + + I I  K DL      ++ E  +     S      L 
Sbjct: 301 IMFDAEKLDSSINEDIINLIDENTITIINKIDLIEASKIFSIENKYKCLRVSVKNNIALS 360

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            ++  I++I  N          +++RH ++L Q + +L   SL   D  L +  E++R+ 
Sbjct: 361 SILKNIENIAENMAGFTETPYITNQRHRHYLKQALLHLTAFSL---DNDLVLATEDIRMT 417

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +G ITG ++VE++L  IF  FCIGK
Sbjct: 418 ARCIGTITGVINVEEILGEIFKNFCIGK 445


>gi|332976009|gb|EGK12880.1| tRNA modification GTPase [Psychrobacter sp. 1501(2011)]
          Length = 463

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/461 (33%), Positives = 251/461 (54%), Gaps = 30/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T      + IIRLSGP  + +   +  K    PR AS   F+     +LD+GL+
Sbjct: 6   TIAAIATPLGRGGVGIIRLSGPKAYDIACQLTGKDHFTPRLASFCRFYDDQRNVLDEGLV 65

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F +P SFTGED  E   HGG+ + N +L  + ++     A PGEFS RAFEN K+DLL
Sbjct: 66  LYFKAPYSFTGEDVIELQGHGGMILQNQLLARVFEL-GAHQAQPGEFSYRAFENDKLDLL 124

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE++AD I + +      ++  ++GE S+     ++ L  +R ++EA +DF +EEDV  
Sbjct: 125 QAEAIADAIDATSAAAASSAIRSLTGEFSNKINDILEALIELRLYVEASIDFPDEEDVDF 184

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S   + + +  +++ + + ++  + G+++R+G  +V+ G  NAGKSSL N+LA ++ AI
Sbjct: 185 LSDGVIESKLSRIQDRLKTILATAQQGQLLRDGVHVVLAGRPNAGKSSLLNSLAGQERAI 244

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTD+ GTTRD L   + L G  + ++DTAG+R+T D VE+ GI+R    +  ADL+LL+ 
Sbjct: 245 VTDVAGTTRDTLQETIVLNGLTIHLTDTAGLRDTTDAVERIGIERARTAIHQADLLLLVH 304

Query: 307 EIN---SKKEISFP------------KNIDFIFIGTKSDLYS-----TYTEEYD------ 340
           +++   +  E++                   + IG K DL         +++ D      
Sbjct: 305 DLSKQANPLELATELFGTTASGTPNFDPAKLLLIGNKRDLVEQQQSQNLSDKVDVSGYEQ 364

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD- 399
             +S  T EG++ LI  +   +   F     S+ +  RHL  L +T ++L  A L   + 
Sbjct: 365 VNVSCETSEGIDCLIATLCDKV--GFHPPENSLIARTRHLDALRRTQQHLNDAHLQLVEY 422

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +++AE+LR    SLG+ITG    + LL  IF  FCIGK
Sbjct: 423 QAGELVAESLRQGQYSLGEITGEFSADDLLGRIFGSFCIGK 463


>gi|281209236|gb|EFA83409.1| GTP-binding protein 3 [Polysphondylium pallidum PN500]
          Length = 595

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/501 (33%), Positives = 268/501 (53%), Gaps = 63/501 (12%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK------------------KP 43
              KETI+A+S+GA+ S ++IIR+SGP      + + +K                     
Sbjct: 96  TKLKETIYALSSGAVKSGVAIIRVSGPQSMTALQQLTRKVLVTNSSTSTTTTTTSSDYNI 155

Query: 44  FPRKASLRYFFGL-DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102
            PR   L  F+    G  LD+G+ + F  P SFTGED  E H+HGG AV++ +LE L+K+
Sbjct: 156 VPRMTVLSNFYDPTSGEQLDRGMYVWFQGPNSFTGEDVLELHIHGGRAVIHDMLEALSKV 215

Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162
             LR+A PGEF++RAFENGK+DL E E LADL+ ++T  QR+++++ M G +  LY +  
Sbjct: 216 DGLRMAEPGEFTKRAFENGKMDLTEVEGLADLLDAQTNQQRKIALQQMQGSIGKLYTELR 275

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
           D+L    +++EA +DF ++ +++    ++    I+ ++N I  H++ GK GE +R+G  +
Sbjct: 276 DQLIRASAYMEAYIDFGDDAEIEPAVVEQSKQRIIAIRNKIMKHLTDGKRGEKLRDGATV 335

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  NAGKSSL N LA +  +IV+ I GTTRDV+ + LD+ GY V + DTAGIRE+ D
Sbjct: 336 TIIGPPNAGKSSLINLLANRRASIVSPIEGTTRDVVEVMLDIGGYPVILGDTAGIRESTD 395

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKS----- 329
           ++E+EG+      V N+++ L + + N+        +  +    + + IF+  K      
Sbjct: 396 VIEREGVSMARDRVLNSEITLCVFDCNALIKSNGKIEPMLLDLIDCNTIFLFNKIDLLLD 455

Query: 330 ----------------DLYSTYTEE------------YDHLISSFTGEGLEELINKIKSI 361
                            +Y    ++            +   +S     G+++L+++I+  
Sbjct: 456 DDNNNKWKETKQQILQQIYEAIRQQPLRQSLFKVNNVFSCELSCSNQTGIKDLLSRIELY 515

Query: 362 LSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
           L   F+  +    + +  RH  HL   V  L    L   D  + I +E LR A  S+G I
Sbjct: 516 LKELFEINEKEAPLLTRMRHKEHLINCVESLNNY-LEYCDTDVVIASEELRSAIRSIGSI 574

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           T  V+V+ LLD+IF  FCIGK
Sbjct: 575 TYHVNVDDLLDVIFKDFCIGK 595


>gi|260495366|ref|ZP_05815493.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_33]
 gi|260197144|gb|EEW94664.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_33]
          Length = 455

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 239/454 (52%), Gaps = 21/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLDGR-IL 61
           +TI A+ST      ISI+R+SG     + E I + K       +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRPKNKKASELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ E 
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKITTIKKSVLDLAAHINVVLDYPE- 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E + +   + +++++     +I   +     G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 182 EGIDDPVPENLVDNLKKASAEIKDLVLSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDI+E  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENIGVEKSKELINSADL 301

Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGE 349
           IL + +I+ + +               I I  K D+            E    IS+ +  
Sbjct: 302 ILYVIDISREIDEEDFRIYDIINTDKVIGILNKIDIKKDIDLSKFSKIEKWIEISALSKI 361

Query: 350 GLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIA 406
           G++ L N+I   + N+  +      + ++ RH   L +T    L +    +K   +D++A
Sbjct: 362 GIDNLENEIYKFIMNENVEDSSQKLVITNVRHKSALEKTNEALLNIIETIDKGFPMDLMA 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 422 VDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|34763011|ref|ZP_00143987.1| THIOPHENE AND FURAN OXIDATION PROTEIN THDF [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887312|gb|EAA24406.1| THIOPHENE AND FURAN OXIDATION PROTEIN THDF [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 455

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 143/454 (31%), Positives = 237/454 (52%), Gaps = 21/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLDGR-IL 61
           +TI A+ST      ISI+R+SG     + E I K K       +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFKPKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ E 
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPE- 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E + +   + +++++     +I   +S    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 182 EGIDDPVPENLVDNLKKASAEIRDLVSSYNKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKS------DLYSTYTEEYDHLISSFTGE 349
           IL + + + + +               I I  K       DL      E    IS+ +  
Sbjct: 302 ILYVIDTSREIDEEDYRIYDIINTDKVIGILNKIDIKRNTDLSEFPKIEKWIEISALSKT 361

Query: 350 GLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIA 406
           G++ L N+I   +  +  +      + ++ RH   L +T    L +    +    +D++A
Sbjct: 362 GIDNLENEIYKYIMKENVEDSSQKLVITNVRHKSALEKTNEALLNIIETIDMGLPMDLMA 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 422 VDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|237741002|ref|ZP_04571483.1| thiophene and furan oxidation protein thdf [Fusobacterium sp.
           4_1_13]
 gi|229431046|gb|EEO41258.1| thiophene and furan oxidation protein thdf [Fusobacterium sp.
           4_1_13]
          Length = 455

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 143/454 (31%), Positives = 237/454 (52%), Gaps = 21/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLDGR-IL 61
           +TI A+ST      ISI+R+SG     + E I K K       +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFKPKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVILK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ E 
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPE- 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E + +   + +++++     +I   +S    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 182 EGIDDPVPENLVDNLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKS------DLYSTYTEEYDHLISSFTGE 349
           IL + + + + +               I I  K       DL      E    IS+ +  
Sbjct: 302 ILYVIDTSREIDEEDYRIYDIINTDKVIGILNKIDIKRNTDLSEFPKIEKWIEISALSKT 361

Query: 350 GLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIA 406
           G++ L N+I   +  +  +      + ++ RH   L +T    L +    +    +D++A
Sbjct: 362 GIDNLENEIYKYIMKENVEDSSQKLVITNVRHKSALEKTNEALLNIIETIDMGLPMDLMA 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 422 VDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|13786073|gb|AAK39556.1| mitochondrial GTP binding protein 2 [Homo sapiens]
 gi|13786075|gb|AAK39557.1| mitochondrial GTP binding protein 3 [Homo sapiens]
          Length = 471

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 167/446 (37%), Positives = 246/446 (55%), Gaps = 21/446 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R             
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARESCN------F 328

Query: 305 LKEINSKKEISFPKN--IDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELIN 356
           L  + +      P +     + +  KSDL S         +      S  TGEGL+ L+ 
Sbjct: 329 LATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLDGLLE 388

Query: 357 KIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
            ++  L+           + +  RH +HL   +  L       +   L + AE LR+A  
Sbjct: 389 ALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK---QSKDLALAAEALRVARG 445

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            L ++TG    E++LDIIF  FC+GK
Sbjct: 446 HLTRLTGGGGTEEILDIIFQDFCVGK 471


>gi|297466925|ref|XP_002704761.1| PREDICTED: GTP binding protein 3 (mitochondrial) [Bos taurus]
 gi|297476307|ref|XP_002688589.1| PREDICTED: GTP binding protein 3 (mitochondrial) [Bos taurus]
 gi|296486094|gb|DAA28207.1| GTP binding protein 3 (mitochondrial) [Bos taurus]
          Length = 470

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 166/443 (37%), Positives = 245/443 (55%), Gaps = 16/443 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+     + +   +  P  RKA LR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALQSLTAPRDLPLARKACLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DFSE++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGDLCRGWAETLTKALAHVEAYIDFSEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +     +  +++  L+  +  H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLDQADSEVRKLEVALGVHLRDARRGQRLRSGAHVVVAGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+   +SDTAG+RE    VE+EG++R        D +++
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGVGPVEQEGVRRAQKSCNFLDTVVI 334

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKI 358
                +            + +  KSDL      +          +S  TGEGL+ L+  +
Sbjct: 335 PAGARNPNG----SRQRLLLVLNKSDLLPAGRSDLHPDLPSHLLLSCLTGEGLDGLLEAL 390

Query: 359 KSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           K  L+          + +  RH +HL   +  L      +    L + AE LR+A   L 
Sbjct: 391 KKELAALCGDPSTGPLLTRSRHQHHLRGCLDALGQYKQAK---DLALAAEALRVARGHLS 447

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
            +TG    E++LDIIF  FC+GK
Sbjct: 448 HLTGGGGTEEILDIIFRDFCVGK 470


>gi|167834937|ref|ZP_02461820.1| tRNA modification GTPase TrmE [Burkholderia thailandensis MSMB43]
          Length = 467

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 236/468 (50%), Gaps = 30/468 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56
           +  + ++I A++T +    I ++R+S    G +            +  PR AS   F   
Sbjct: 2   LATDSDSIVAIATASGRGGIGVVRISFGRAGEAAALALSEALCGARLAPRHASYVPFLDG 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGEF
Sbjct: 62  AGEPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLLLQRCLDAGRAYGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGVFSRDVHVLVDDVIALRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPE-EEIDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIVDTAGLRETEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYSTY----------- 335
            E+E AD++L L +  S +          FP  +  + +  K+DL               
Sbjct: 301 GEIERADVVLHLLDARSGRGPDDEVIAARFPAGVPVVRVLNKTDLTDAPASVARVGGGAA 360

Query: 336 -TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS--QTVRYLEM 392
             +  +  +S+  G+G++ L  ++  I   +         + +RHL  L   Q       
Sbjct: 361 CADVCEVRLSAKRGDGIDLLRGELLRIAGWQAG-AESVYLARERHLIALRAAQAHLARAA 419

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 GHADQNAQALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 467


>gi|294784390|ref|ZP_06749681.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_27]
 gi|294487962|gb|EFG35317.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_27]
          Length = 455

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 238/454 (52%), Gaps = 21/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLDGR-IL 61
           +TI A+ST      ISI+R+SG     + E I + K       +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRPKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ E 
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPE- 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E + +   + +++++     +I   +S    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 182 EGIDDPVPENLVDNLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGE 349
           IL + + + + +               I I  K D+            E    IS+ +  
Sbjct: 302 ILYVIDTSREIDEEDYRIYDIINTDKVIGILNKIDIKKDIDLTKFPKIEKWIEISALSKL 361

Query: 350 GLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIA 406
           G++ L N+I   + N+  +      + ++ RH   L +T    L +    +    +D++A
Sbjct: 362 GIDNLENEIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEALLNIIETIDMGLPMDLMA 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 422 VDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|167766870|ref|ZP_02438923.1| hypothetical protein CLOSS21_01387 [Clostridium sp. SS2/1]
 gi|317499289|ref|ZP_07957562.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711418|gb|EDS21997.1| hypothetical protein CLOSS21_01387 [Clostridium sp. SS2/1]
 gi|291558409|emb|CBL37209.1| tRNA modification GTPase trmE [butyrate-producing bacterium SSC/2]
 gi|316893458|gb|EFV15667.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 458

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 146/457 (31%), Positives = 232/457 (50%), Gaps = 26/457 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-------KASLRYFFGLDGR 59
           TI A++T    S I IIR+SG     + E + K KK   +        A   + +  +  
Sbjct: 5   TIAAIATPMTNSGIGIIRISGDEALDIIEKVFKPKKKDKKIKDVKTYTAHYGHVYD-EST 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ +++V   P S+T ED  E + HGG+ V+  +LE + K      A PGEF++RAF 
Sbjct: 64  LLDECIVLVMKGPHSYTAEDVVEINCHGGVVVMKKVLEAVFKA-GATPAEPGEFTKRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL EAE++ DLI S+ E     S++ + G L     +   ++ H  +FIE+ LD  
Sbjct: 123 NGRIDLSEAEAVMDLIQSKNEFAMSTSLKQLEGALGKKITEIRKQIIHSVAFIESALDDP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   V  FS +   + +  + N ++  +     G I++ G + VI+G  NAGKSS+ N L
Sbjct: 183 EHYSVDGFSDEL-KDQVEVIINQLNEFLENADNGRILKEGIQTVIVGKPNAGKSSVLNVL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTDI GTTRD L   + ++G  + I DTAGIR+T+D++EK G+ +    +  A
Sbjct: 242 LGEERAIVTDIAGTTRDTLEESIQIKGIPLNIIDTAGIRDTNDLIEKIGVDKAKDLLTKA 301

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYT--------EEYDHLISS 345
           DL+L + +       + ++ +   ++   I +  K+DL              E    IS+
Sbjct: 302 DLVLYVVDTSDPLTKDDEEIMELIEDKQTIVLLNKADLDQVVKVSDLKEKGFEQIVQISA 361

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
               G+EEL   I+ I           I  ++ RH   +S+ ++ L M     E     D
Sbjct: 362 KEQTGIEELYQLIQDIFFEGHVSFNDEIYLTNMRHKTEVSEALKSLAMVLQSIEDGMPED 421

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + +L  A   LG ITG    E L++ IF++FC+GK
Sbjct: 422 FFSIDLLDAYEHLGFITGESVGEDLVNEIFAEFCMGK 458


>gi|188993859|ref|YP_001905869.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv.
           campestris str. B100]
 gi|205829191|sp|B0RMM4|MNME_XANCB RecName: Full=tRNA modification GTPase mnmE
 gi|167735619|emb|CAP53837.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv.
           campestris]
          Length = 446

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 149/449 (33%), Positives = 236/449 (52%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN    TI A++T A    I I+RLSGP   Q+   +        R A    F    G +
Sbjct: 1   MNASPSTIVAIATAAGTGGIGIVRLSGPQSVQIAAAL-GIAGLQSRHARYARFRDAQGEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + FP+P SFTGE+  E   HG   ++  ++     +   R A  GEFS RAF N
Sbjct: 60  IDDGIAVWFPAPHSFTGEEVVELQGHGSPVLLRQLVARCIAL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       + LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRSLDGVFSRRVDAVSESLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E +      +V  ++   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 -EPLDTLGGAQVREELTRTRALLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+RE  D +E+EG++R   E++ AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDAIEREGMRRARAELQRAD 297

Query: 301 LILLLKEINSKKEISFPKN------IDFIFIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +                ++I  K DL +     +     +S+ TG+GLE
Sbjct: 298 LALIVLDARDPQAARDALGDAIDAVPRRLWIHNKCDLLAVAGPMDADAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            L  +++ + L +  + +     +  RH+  L +  ++ + A L  +   L++ AE LRL
Sbjct: 358 HLHTRLRELALGDGIESVDGEFSARTRHVDALHRAEQHADAADLELRYEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446


>gi|34581226|ref|ZP_00142706.1| possible thiophene and furan oxidation protein thdF [Rickettsia
           sibirica 246]
 gi|229587120|ref|YP_002845621.1| tRNA modification GTPase TrmE [Rickettsia africae ESF-5]
 gi|28262611|gb|EAA26115.1| possible thiophene and furan oxidation protein thdF [Rickettsia
           sibirica 246]
 gi|228022170|gb|ACP53878.1| tRNA modification GTPase TrmE [Rickettsia africae ESF-5]
          Length = 445

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/448 (34%), Positives = 248/448 (55%), Gaps = 17/448 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDKG 64
           ETIFA S+    + +++ R+SGP   +V + +  +K    R    +         ++D  
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKDFKSRLMYYQQITVPETKELIDNV 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F SP SFTGED  E H HG  A+   +   L  +  +RLA  GEF++RAF N K D
Sbjct: 62  MVVYFKSPGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKFD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE +ADLI++ET MQ + ++   SG+L +LY  W  +L  + S +EA +DF + ED+
Sbjct: 122 LTAAEGIADLINAETIMQHKQAIRQASGKLEALYNNWRSQLLKMISLLEAYIDFPD-EDI 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +    EV N    L N IS +++  + GE++R+G K+ I+G  N GKSSL N L ++D+
Sbjct: 181 PDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDI 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIV++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + AD+ +
Sbjct: 241 AIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTADIKI 300

Query: 304 LLKEINS-----KKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---SSFTGEGLE 352
           ++ +         ++I    + + I I  K DL      ++ E  +     S      L 
Sbjct: 301 IMFDAEKLDSSINEDIINLIDENTITIINKIDLIEASKIFSIENKYKCLRVSVKNNIALS 360

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            ++  I++I  N          +++RH  +L Q + +L   SL   D  L +  E++R+ 
Sbjct: 361 SILKNIENIAENMAGFTETPYITNQRHRNYLQQALSHLTAFSL---DNDLVLATEDIRMT 417

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +G ITG ++VE++L  IF  FCIGK
Sbjct: 418 ARCIGAITGVINVEEILGEIFKNFCIGK 445


>gi|189502543|ref|YP_001958260.1| hypothetical protein Aasi_1201 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|226704778|sp|B3ETH9|MNME_AMOA5 RecName: Full=tRNA modification GTPase mnmE
 gi|189497984|gb|ACE06531.1| hypothetical protein Aasi_1201 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 455

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 153/458 (33%), Positives = 246/458 (53%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LD 57
           M H++E I A++T A  SAI++IRLSG +   +   + K K    ++ S    FG     
Sbjct: 1   MLHQQEPIIALATPAGKSAIAVIRLSGQNVISIVNQVFKGKD-LNQQPSHTIHFGTINYQ 59

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ++D+ L+ +F +P SFT EDS E   HG   ++  I++ L     +RLA PGEF++RA
Sbjct: 60  GEMIDEVLIALFKAPRSFTQEDSVEISCHGSSYIIQKIMQ-LFMELGIRLAKPGEFTQRA 118

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+ DL++AE++ADLI+++T +  + +++ M G  S+      +KL H+ + +E +LD
Sbjct: 119 FLNGRFDLIQAEAVADLIAADTAIAHKTALQQMRGGFSTQLQALREKLIHVGALLELELD 178

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F+E EDV       + + I  L   I   I    LG +I+NG  I I+G  N GKS+L N
Sbjct: 179 FAE-EDVAFADRAMLESLIQELLTIIGKLIQSFSLGNVIKNGLPIAIVGKPNVGKSTLLN 237

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEV 296
           AL +++ AIV+ IPGTTRD +  ++++ G   +  DTAG+RE T D +E  GI RT   +
Sbjct: 238 ALLQEERAIVSPIPGTTRDFIEAEINIGGIHCRFIDTAGLREHTTDTIESIGIARTKERM 297

Query: 297 ENADLILLLKEINSKKEISFPK--------NIDFIFIGTK-----SDLYSTYTEEYDHLI 343
           + A LI+ + +++ +   +            I +I +G K      DL    ++E    I
Sbjct: 298 QQAGLIIYVFDLSDESLATIQNAIEGISELGIPYIKVGNKLDAAQPDLLKALSQEDFVFI 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGL 402
           S+   + L +L  +I  +          +I  + RH   L ++    L +          
Sbjct: 358 STAKKQHLGQLEARILELFQLDQLDNSDTIVVNTRHYESLVKSQNALLAVVEGIINGLSN 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++  +L+     LG+ITG +  E LLD +FSKFCIGK
Sbjct: 418 ELLMIDLKQTLYYLGEITGEITTEDLLDDLFSKFCIGK 455


>gi|167560998|ref|ZP_02353914.1| tRNA modification GTPase TrmE [Burkholderia oklahomensis EO147]
          Length = 467

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/468 (32%), Positives = 239/468 (51%), Gaps = 30/468 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS-GPSCFQVCEFICK---KKKPFPRKASLRYFFGL 56
           +  + + I A++T +    I ++R+S G +       +       +  PR AS   F   
Sbjct: 2   LATDSDPIVAIATASGRGGIGVVRISLGRAAEAAALALSDALCGTRLAPRHASYVPFLDG 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGEF
Sbjct: 62  AGEPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHTLVDDVIALRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPE-EEIDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDLYST------------ 334
            E+E AD++L L +  S+           FP  +  + +  K+DL               
Sbjct: 301 GEIERADVVLHLLDARSRLGADDQAIAARFPAGVPVVRVLNKTDLTDVPASVARGGGEEG 360

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
             E  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+
Sbjct: 361 GAEVCEVRLSAKRGDGIDLLRGELLRIAGWQAG-AESVYLARERHLIALRAAQAHLARAA 419

Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 EHADQNAQALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 467


>gi|157829012|ref|YP_001495254.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933734|ref|YP_001650523.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Iowa]
 gi|166234817|sp|A8GTM1|MNME_RICRS RecName: Full=tRNA modification GTPase mnmE
 gi|189036206|sp|B0BV57|MNME_RICRO RecName: Full=tRNA modification GTPase mnmE
 gi|157801493|gb|ABV76746.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908821|gb|ABY73117.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Rickettsia rickettsii str. Iowa]
          Length = 445

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 157/448 (35%), Positives = 249/448 (55%), Gaps = 17/448 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDKG 64
           ETIFA S+    + +++ R+SGP   +V + +  +K    R    +         ++D  
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKDFKSRLMYYQQITVPETKELIDNV 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F SP SFTGED  E H HG  A+   +   L  +  +RLA  GEF++RAF N K+D
Sbjct: 62  MVVYFKSPGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE +ADLI++ET MQ + ++   SG+L +LY  W  +L  I S +EA +DF + ED+
Sbjct: 122 LTAAEGIADLINAETIMQHKQAIRQASGKLEALYNNWRSQLLKILSLLEAYIDFPD-EDI 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +    EV N    L N IS +++  + GE++R+G K+ I+G  N GKSSL N L ++D+
Sbjct: 181 PDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDI 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIV++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + AD+ +
Sbjct: 241 AIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTADIKI 300

Query: 304 LLKEINS-----KKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---SSFTGEGLE 352
           ++ +         ++I    + + I I  K DL      ++ E  +     S      L 
Sbjct: 301 IMFDAEKLDSSINEDIINLIDENTITIINKIDLIEASKIFSIENKYKCLRVSVKNNIALS 360

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            ++  I++I  N          +++RH  +L Q + +L   SL   D  L +  E++R+ 
Sbjct: 361 SILKNIENIAENMAGFTETPYITNQRHRNYLQQALSHLTAFSL---DNDLVLATEDIRMT 417

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +G ITG ++VE++L  IF  FCIGK
Sbjct: 418 ARCIGAITGVINVEEILGEIFKNFCIGK 445


>gi|193082988|ref|NP_598399.2| tRNA modification GTPase GTPBP3, mitochondrial isoform IV [Homo
           sapiens]
          Length = 524

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 172/493 (34%), Positives = 254/493 (51%), Gaps = 62/493 (12%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLN--------------------------------DILFLKNDISSHISQGKL 212
           +    ++  +                                ++  L+  + +H+   + 
Sbjct: 215 EEGVLEQGGSTWWWGRKTPHISPQRLPSLSLSACLLSPTADIEVRALQVALGAHLRDARR 274

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G+ +R+G  +V+ G  NAGKSSL N L++K V+IV+  PGTTRDVL   +DL G+ V +S
Sbjct: 275 GQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLS 334

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------------- 318
           DTAG+RE    VE+EG++R    +E ADLIL + + +     S                 
Sbjct: 335 DTAGLREGVGPVEQEGVRRARERLEQADLILAMLDASDLASPSSCNFLATVVASVGAQSP 394

Query: 319 ---NIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELINKIKSILSNKFKKL 369
              +   + +  KSDL S         +      S  TGEGL+ L+  ++  L+      
Sbjct: 395 SDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLDGLLEALRKELAAVCGDP 454

Query: 370 PFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQ 427
                + +  RH +HL   +  L       +   L + AE LR+A   L ++TG    E+
Sbjct: 455 STDPPLLTRARHQHHLQGCLDALGHYK---QSKDLALAAEALRVARGHLTRLTGGGGTEE 511

Query: 428 LLDIIFSKFCIGK 440
           +LDIIF  FC+GK
Sbjct: 512 ILDIIFQDFCVGK 524


>gi|296328796|ref|ZP_06871310.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154131|gb|EFG94935.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 455

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 143/454 (31%), Positives = 237/454 (52%), Gaps = 21/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLDGR-IL 61
           +TI A+ST      ISI+R+SG     + E I K K       +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFKPKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ E 
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPE- 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E + +   + ++ ++     +I   +S    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 182 EGIDDPVPENLVENLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGE 349
           IL + + + + +               I I  K D+            E    IS+ +  
Sbjct: 302 ILYVIDTSREIDEEDFRIYDIINTDKVIGILNKIDIKKEINLSKFPKIEKWIEISALSKL 361

Query: 350 GLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIA 406
           G++ L N+I   + N+  +      + ++ RH   L +T    L +    +    +D++A
Sbjct: 362 GIDNLENEIYKYIMNENIEDSSQKLVITNVRHKSALEKTNEALLNIIETIDMRLPMDLMA 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 422 VDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|66472790|ref|NP_001018605.1| tRNA modification GTPase GTPBP3, mitochondrial precursor [Danio
           rerio]
 gi|82192604|sp|Q501Z5|GTPB3_DANRE RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial;
           AltName: Full=GTP-binding protein 3; Flags: Precursor
 gi|63100959|gb|AAH95801.1| GTP binding protein 3 [Danio rerio]
          Length = 500

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 179/469 (38%), Positives = 267/469 (56%), Gaps = 35/469 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDK 63
            +TI+++S+G     ++++R+SGP+       + +   P PR ASLR         +LD+
Sbjct: 34  DDTIYSLSSGQGKCGVAVVRVSGPASALAVRRLTRS-LPAPRTASLRSISHPQSKELLDR 92

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GL++ FP P SFTGEDSAEFH+HGG AV++G+L+ L  +P LR A  GEF+RRAF  GK+
Sbjct: 93  GLVLWFPGPASFTGEDSAEFHIHGGPAVISGVLQALGSLPGLRPAEAGEFTRRAFYAGKL 152

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E L+DLI +ETE QRR ++  M+G+L  +Y  W D+L    + +EA +DFSE+E 
Sbjct: 153 DLTEVEGLSDLIHAETEAQRRQALRQMAGDLGRIYQDWTDQLKRCLAHVEAFIDFSEDEL 212

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +++    +V   +  L+ D+ +H+S  + GE +R+G  +VI G +NAGKSSL N L ++ 
Sbjct: 213 IEDGVLNDVDRAVQQLQTDMENHLSDERRGERLRSGVHVVIAGSTNAGKSSLLNLLTQRP 272

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV+   GTTRDVL + LD+ GY V +SDTAG+R+T D VE+EG++R    VE ADL L
Sbjct: 273 AAIVSPTAGTTRDVLEVPLDIGGYPVLLSDTAGLRDTSDSVEQEGVRRARQRVEQADLSL 332

Query: 304 LLKEINSKKEISF-----------------PKNIDFIFIGTKSDLYSTYTEEYDH----- 341
           ++ ++                          +    I I  +SDL S   +         
Sbjct: 333 VVVDLTQLPSERRHVPVFLRGHLKNILERSSQQQQHILILNESDLVSAEQQRSIQTSLQE 392

Query: 342 --------LISSFTGEGLEELINKIKSILSNKFKK--LPFSIPSHKRHLYHLSQTVRYLE 391
                    +S  + +GLEEL+  + + L        +     +  RH  HL +++  L+
Sbjct: 393 LSGAPSACFLSCHSRDGLEELLTLLHNTLKTLCGDPLIGSPTLTQTRHRTHLQKSIEALQ 452

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 +D  L + AE LRL  +SLG+ITG V  E++LD+IF  FCIGK
Sbjct: 453 QYH-EYRDVDLALAAEGLRLGLLSLGRITGRVSPEEILDVIFRDFCIGK 500


>gi|167568262|ref|ZP_02361136.1| tRNA modification GTPase TrmE [Burkholderia oklahomensis C6786]
          Length = 467

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/468 (32%), Positives = 239/468 (51%), Gaps = 30/468 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS-GPSCFQVCEFICK---KKKPFPRKASLRYFFGL 56
           +  + + I A++T +    I ++R+S G +       +       +  PR AS   F   
Sbjct: 2   LATDSDPIVAIATASGRGGIGVVRISLGRAAEAAALALSDALCGTRLAPRHASYVPFLDG 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEF 113
            G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGEF
Sbjct: 62  AGEPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GKS
Sbjct: 182 ATLDFPE-EEIDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKS 240

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTW 300

Query: 294 LEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDLYST------------ 334
            E+E AD++L L +  S+           FP  +  + +  K+DL               
Sbjct: 301 GEIERADVVLHLLDARSRLGADDQAIAARFPAGVPVVRVLNKTDLTDVPASVARGGGGEG 360

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
             E  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A+
Sbjct: 361 GAEVCEVRLSAKRGDGIDLLRGELLRIAGWQAG-AESVYLARERHLIALRAAQAHLARAA 419

Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              ++    LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 420 EHADQNAQALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 467


>gi|257470414|ref|ZP_05634505.1| tRNA modification GTPase TrmE [Fusobacterium ulcerans ATCC 49185]
 gi|317064622|ref|ZP_07929107.1| thiophene and furan oxidation protein THDF [Fusobacterium ulcerans
           ATCC 49185]
 gi|313690298|gb|EFS27133.1| thiophene and furan oxidation protein THDF [Fusobacterium ulcerans
           ATCC 49185]
          Length = 456

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 135/456 (29%), Positives = 240/456 (52%), Gaps = 22/456 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR- 59
            +TI A+ST      I I+R+SG +  ++   I K K        +  S+ Y    DG+ 
Sbjct: 3   FDTIAAISTPRGEGGIGIVRISGNNALEILGKIFKPKSKKNIEELKNFSINYGHLYDGKN 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ L+ +  +P ++T ED  E + HGG  +   +LE + K    R++  GEF+RRAF 
Sbjct: 63  LVDEVLVSIMKAPNTYTKEDIVEINCHGGFVITEKVLETVLK-NGARISESGEFTRRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++ D+I  +TE    LS++ + G+L    G     +  + + I   LD+ 
Sbjct: 122 NGRLDLTQAEAVMDIIHGKTEKSVSLSLDQLRGDLKEQIGHLKKLVLDVAAHINVVLDYP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E E + +   + ++ ++  + +     I     G++I+ G K  I+G  N GKSS+ N++
Sbjct: 182 E-EGIDDPLPENLVGNLREVMDTTDILIRSYDKGKMIKEGIKTAIVGKPNVGKSSILNSV 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K++ AIVT + GTTRDV+   ++L+G  + + DTAGIR+TDD+VE  G++++   +E+A
Sbjct: 241 LKEERAIVTHVAGTTRDVIEEVVNLKGIPLVLVDTAGIRKTDDLVENIGVEKSKQLIESA 300

Query: 300 DLILLLKEINSKKEISFPKNI------DFIFIGTKSDLYSTYTEEY------DHLISSFT 347
           DLIL + + +   +    +          I I  K D+                 IS+  
Sbjct: 301 DLILFVVDGSRALDEEDMRIHEAIKAEKVIGILNKIDIREDIDLSPLTKINKWLEISAIK 360

Query: 348 GEGLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRYLE-MASLNEKDCGLDI 404
            +G++E+  +I + +  +  +        ++ RH   L +T + +E +    E    +D+
Sbjct: 361 NQGIDEMEEEIYNHIIEENVEDSSQKITITNIRHKSALEKTKQSIENIFETIENGLPMDL 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 421 MAVDIKGALDSLSEVTGEISSEDLLDHIFSNFCVGK 456


>gi|157826149|ref|YP_001493869.1| tRNA modification GTPase TrmE [Rickettsia akari str. Hartford]
 gi|166234814|sp|A8GPN6|MNME_RICAH RecName: Full=tRNA modification GTPase mnmE
 gi|157800107|gb|ABV75361.1| tRNA modification GTPase TrmE [Rickettsia akari str. Hartford]
          Length = 445

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/448 (34%), Positives = 253/448 (56%), Gaps = 17/448 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64
           ETIFA S+    + +++ R+SGP   +V + +  KK   PR    +     +   ++D  
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGKKAFKPRLMYYQQIIAPETKELIDNA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F  P SFTGED  E H HG  A+   ++  L  + ++RLA  GEF++RAF N K D
Sbjct: 62  MVVYFKLPNSFTGEDVVEIHTHGSKAISIMMINTLLNISDIRLAEAGEFTKRAFLNNKFD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE +ADLI++ET MQ R ++   SG L  LY  W  +L  I S +EA +DF + ED+
Sbjct: 122 LTAAEGIADLINAETIMQHRQAIRQASGRLEELYNSWRSQLLKIISLLEAYIDFPD-EDI 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +    +V N    L N+IS++++  + GE++ +G K+ I+G  N GKSSL N L ++D+
Sbjct: 181 PDSVLNDVNNTHKNLVNEISNYLNDNRRGELLNSGLKLAIVGPPNTGKSSLLNFLMQRDI 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           A+V++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + AD+ +
Sbjct: 241 AMVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTADIKI 300

Query: 304 LLKEI-----NSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHLI---SSFTGEGLE 352
           ++ +      +  ++I+   + + I I  K DL      ++ E  +     S      L 
Sbjct: 301 IMFDAKKLDSSINEDITGLIDENTIVIINKIDLIEPSKVFSIEDKYKCLRVSVKNNIALS 360

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            ++  I++I  N          +++RH ++L Q + +L   SL   D  L +  E++R+ 
Sbjct: 361 SILKNIENIAENMAGFTETPYITNQRHRHYLKQALSHLTDFSL---DNDLVLATEDIRIT 417

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +G ITG ++VE++L  IF  FCIGK
Sbjct: 418 ARCIGAITGVINVEEILGEIFQNFCIGK 445


>gi|297566657|ref|YP_003685629.1| tRNA modification GTPase TrmE [Meiothermus silvanus DSM 9946]
 gi|296851106|gb|ADH64121.1| tRNA modification GTPase TrmE [Meiothermus silvanus DSM 9946]
          Length = 436

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 137/444 (30%), Positives = 227/444 (51%), Gaps = 14/444 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLD 57
           +    E I A++T     A+ I+RLSG    +V   + + K P      + +        
Sbjct: 3   LPSLNEPIAAIATPPGKGAVGIVRLSGVGALEVAAKVWRGKDPRKLEGGRFTYGTIVDAR 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G +LD+ L++VF +P S+TG+D+ E   HG  AV+  +L+ L +    RLA PGEF+ RA
Sbjct: 63  GEVLDEALMLVFRAPHSYTGQDAVELQTHGSPAVLRQVLQALLEA-GARLAQPGEFTLRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           + NG++DL +AE++  L+ SE++  RR ++ G++  LS       ++L  + + I+A LD
Sbjct: 122 YLNGRMDLAQAEAVLALVESESDAARRQALRGLARSLSQQIEGMAERLYDLLAHIQAWLD 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E    +     E+   +  +  ++   ++    G I   G ++ ++G  NAGKSSL N
Sbjct: 182 YPE----EGVEPAEIQTTVSEVLAEVERLLATAPAGRIAHKGARLALVGAPNAGKSSLLN 237

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL   + AIVT IPGTTRD L   L++ G  +   DTAG+R+TDD VE+ G++R     +
Sbjct: 238 ALLGYERAIVTPIPGTTRDYLEAPLEIAGVPITAVDTAGVRQTDDPVERSGVERALKIAQ 297

Query: 298 NADLILLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
            ADL+L L +             +    + TK+DL   + +     +SS TG GLE L  
Sbjct: 298 EADLVLYLVDAAEPPPTPPDLPWERALKVATKADLPPAWEDAEFIRVSSQTGFGLEALRK 357

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
            I   L  +  +      S++RH   L +  ++L    L       D+   +++ A  +L
Sbjct: 358 AIHDKLIGQASEGEI-WISNERHTQALYEARQHL----LEALTAPQDLAGLSVQAALDAL 412

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            +I G    E+++  +F  FC+GK
Sbjct: 413 NQILGKDVSEEVIARVFRNFCVGK 436


>gi|53717720|ref|YP_106706.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei K96243]
 gi|53724896|ref|YP_104852.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 23344]
 gi|126440482|ref|YP_001057151.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 668]
 gi|126454342|ref|YP_001064396.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106a]
 gi|134281363|ref|ZP_01768071.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 305]
 gi|167717471|ref|ZP_02400707.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei DM98]
 gi|167736506|ref|ZP_02409280.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 14]
 gi|167813583|ref|ZP_02445263.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 91]
 gi|167822125|ref|ZP_02453596.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 9]
 gi|167843730|ref|ZP_02469238.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei B7210]
 gi|167892208|ref|ZP_02479610.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 7894]
 gi|167900719|ref|ZP_02487924.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei NCTC
           13177]
 gi|167908938|ref|ZP_02496029.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 112]
 gi|167916978|ref|ZP_02504069.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei BCC215]
 gi|217423934|ref|ZP_03455434.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 576]
 gi|226193161|ref|ZP_03788771.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pakistan
           9]
 gi|237810287|ref|YP_002894738.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei MSHR346]
 gi|242317582|ref|ZP_04816598.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106b]
 gi|254184155|ref|ZP_04890746.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1655]
 gi|254194641|ref|ZP_04901072.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei S13]
 gi|254298579|ref|ZP_04966030.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 406e]
 gi|81380766|sp|Q63YV9|MNME_BURPS RecName: Full=tRNA modification GTPase mnmE
 gi|81603688|sp|Q62EM6|MNME_BURMA RecName: Full=tRNA modification GTPase mnmE
 gi|205829148|sp|A3NPX5|MNME_BURP0 RecName: Full=tRNA modification GTPase mnmE
 gi|205829149|sp|A3N480|MNME_BURP6 RecName: Full=tRNA modification GTPase mnmE
 gi|205829160|sp|A1V7D3|MNME_BURMS RecName: Full=tRNA modification GTPase mnmE
 gi|205829167|sp|A3MS17|MNME_BURM7 RecName: Full=tRNA modification GTPase mnmE
 gi|205829168|sp|A2S8D8|MNME_BURM9 RecName: Full=tRNA modification GTPase mnmE
 gi|52208134|emb|CAH34064.1| putative tRNA modification GTPase [Burkholderia pseudomallei
           K96243]
 gi|52428319|gb|AAU48912.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 23344]
 gi|126219975|gb|ABN83481.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 668]
 gi|126227984|gb|ABN91524.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106a]
 gi|134247030|gb|EBA47116.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 305]
 gi|157808553|gb|EDO85723.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 406e]
 gi|169651391|gb|EDS84084.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei S13]
 gi|184214687|gb|EDU11730.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1655]
 gi|217392997|gb|EEC33019.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 576]
 gi|225934761|gb|EEH30738.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pakistan
           9]
 gi|237505603|gb|ACQ97921.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei MSHR346]
 gi|242140821|gb|EES27223.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106b]
          Length = 467

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 153/469 (32%), Positives = 241/469 (51%), Gaps = 32/469 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T +    I ++RLS       +   + + +C  +   PR AS   F  
Sbjct: 2   LATDSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGARL-MPRHASYVPFLD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 61  GAGEPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + TE   R +   + G  S      +D +  +R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPE-EEIDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAGLRETEDEVEKIGIART 299

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLY------------S 333
           + E+E AD++L L +        +      FP  +  + +  K+DL             +
Sbjct: 300 WGEIERADVVLHLLDARSGLGPGDEAIAARFPDGVPVVRVLNKTDLTGAPASVTRTGGGA 359

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A
Sbjct: 360 ARADVCEVRLSAKRGDGIDLLRGELLRIAGWQAG-AESVYLARERHLIALRAAQAHLARA 418

Query: 394 SLNEKD--CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + + +     LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEHAEQNAQALDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFCIGK 467


>gi|237738571|ref|ZP_04569052.1| thiophene and furan oxidation protein THDF [Fusobacterium sp.
           2_1_31]
 gi|229424054|gb|EEO39101.1| thiophene and furan oxidation protein THDF [Fusobacterium sp.
           2_1_31]
          Length = 455

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 240/454 (52%), Gaps = 21/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDGR-IL 61
           +TI A+ST      ISI+R+SG     + E I +   KK    +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRAKSKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +L+ + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEQVLQVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ E 
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPE- 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E + +   + +++++     +I   IS    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 182 EGIDDPVPENLVDNLKKASAEIKDLISSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTY------TEEYDHLISSFTGE 349
           IL + +I+ + +               I I  K D+            +    IS+ +  
Sbjct: 302 ILYVIDISREIDEEDFRIYDIINTDKVIGILNKIDIKKEIDLSKFPKIDKWIEISALSKI 361

Query: 350 GLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIA 406
           G++ L ++I   + N+  +      + ++ RH   L +T    L +    +    +D++A
Sbjct: 362 GIDNLEDEIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEALLNIIETIDMGLPMDLMA 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 422 VDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|284053846|ref|ZP_06384056.1| tRNA modification GTPase TrmE [Arthrospira platensis str. Paraca]
          Length = 469

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 147/470 (31%), Positives = 238/470 (50%), Gaps = 34/470 (7%)

Query: 1   MNHEKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--- 55
           ++ + ETI A++T       +I I+R+SG     + + + K     P  +S R  +G   
Sbjct: 4   ISTKSETIAAIATAIVPQQGSIGIVRMSGAEAVAIAKTLFKAPGNQPW-SSHRILYGYIH 62

Query: 56  --LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
                +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF
Sbjct: 63  HPHTQQLVDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQ-LCLQAGARLATPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           + RAF NG++DL +AES+A+L+ +++      ++ G+ G+L+            I + IE
Sbjct: 122 TLRAFLNGRLDLTQAESVAELVGAQSPQAASAALAGLRGKLADPIHHLRSLCLDILAEIE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF E  D+   +  E+++ +  +   ++  +     GE++R G K+ I+G  N GKS
Sbjct: 182 ARVDFEE--DLPPLNESEIIHQLQEVLQQLTDILDTADRGELLRTGLKVAIVGRPNVGKS 239

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NA ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIR++DD VE+ G++R+ 
Sbjct: 240 SLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRKSDDKVEQIGVERSQ 299

Query: 294 LEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSD---------LYSTYTEE 338
           +  ++ADL+L   +          +     KN   I +  KSD         L      +
Sbjct: 300 IAAQSADLVLFTLDCEKGWTEGENEIYQQVKNRPIIVVMNKSDRLSSAQLENLRQAIINK 359

Query: 339 YDHLISSFT------GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            D   S          +G+ +L   I + +     +        ++R    L++    LE
Sbjct: 360 LDIKPSLIIATAATLNQGITDLETSILNAVHTENLQSANLEFAINQRQAAALTRAKIALE 419

Query: 392 MASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                  D    D    +LR A  +LG++TG    E +LD IFS+FCIGK
Sbjct: 420 QVENTIGDRLPFDFWTIDLRGAIHALGEVTGEEVTESVLDRIFSRFCIGK 469


>gi|220909026|ref|YP_002484337.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7425]
 gi|254811474|sp|B8HSJ3|MNME_CYAP4 RecName: Full=tRNA modification GTPase mnmE
 gi|219865637|gb|ACL45976.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7425]
          Length = 460

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 145/464 (31%), Positives = 234/464 (50%), Gaps = 28/464 (6%)

Query: 1   MNHEKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-- 56
           M +  +TI A++T       +I+I+RLSG     + + +           S R  +G   
Sbjct: 1   MLNPGQTIAAIATAIVPQQGSIAIVRLSGSEAVAIAQRLF-IAPGQQVWESHRILYGYVC 59

Query: 57  ---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
               G+ +D+ LL++  +P S+T ED  EFH HGG+  V  +L+ L       LA PGEF
Sbjct: 60  NPRTGQRVDEALLLLMLAPRSYTKEDVVEFHCHGGMIAVQQVLQ-LCLEAGAVLAQPGEF 118

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           + RAF +G++DL +AES+ADL+ +++    + ++ G+ G+L     Q       I + IE
Sbjct: 119 TLRAFLHGRLDLTQAESVADLVGAKSPQAAQAALAGLQGKLIQPLQQLRRTCIDILAEIE 178

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF E  D+      ++ + I     +++  ++    GE++R G K+ I+G  N GKS
Sbjct: 179 ARIDFEE--DLPPLDLNQISSQIQHSLTEVNRILATADRGELLRTGLKVAIVGRPNVGKS 236

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NA ++ D AIVT++PGTTRDV+   L + G  V++ DTAGIRET D VE+ G++R+ 
Sbjct: 237 SLLNAWSRSDRAIVTELPGTTRDVVESYLVVGGIPVQVLDTAGIRETSDQVEQIGVERSH 296

Query: 294 LEVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------ 341
              + ADL+LL+ +         +   +  +    I +  K DL     +          
Sbjct: 297 KAAQAADLVLLVIDAQTGWTAEDQAIYTQVQERSLILVINKIDLVDQAFQPQACLPDPAL 356

Query: 342 ---LISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LN 396
                ++   +G+E+L + I S +     +        ++R    L++    LE      
Sbjct: 357 TYLCTAAAQNQGIEDLESAILSKVQGGELEGANLDWAINQRQAAALTRAKLSLENVQETI 416

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 417 ANQLPLDFWTIDLREAIRALGEITGEEVTESVLDQIFSRFCIGK 460


>gi|90421001|ref|ZP_01228905.1| putative tRNA modification GTPase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334779|gb|EAS48555.1| putative tRNA modification GTPase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 473

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 191/476 (40%), Positives = 270/476 (56%), Gaps = 39/476 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M H  +TI A+S+G LP+ ++++R+SGP+   V E +     P  R+ASLR F     R 
Sbjct: 1   MTH-SDTIAALSSGTLPAGVAVVRVSGPAARDVMERLAGSVPP-ERRASLRRFRDAADRT 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+ + FP P S TGED AEFH+HGG AVV   LE    +P +RLA  GEF+RR FEN
Sbjct: 59  IDRGIALFFPGPGSVTGEDLAEFHLHGGRAVVAAFLEAATGIPGVRLAVAGEFTRRGFEN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL EAE LADL+++ TE QRR+++    G L SLY  W+  LT+ R+ IEA  DF++
Sbjct: 119 GRIDLTEAEGLADLLAASTEAQRRMAVAQAGGALRSLYEGWMRDLTNARAMIEASFDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV +  +  V   +  +   + +H+++   GEI+R G+K+ I+G  NAGKSSL NALA
Sbjct: 179 EGDVDDDVASGVERQVAVVAAAMRAHLAKADRGEILREGFKVAIVGAPNAGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++VAIVT+IPGTTRDV+   LDL G  V+ SDTAGIRET D +E  GI+R    ++ AD
Sbjct: 239 DREVAIVTEIPGTTRDVIEATLDLGGIPVRFSDTAGIRETADRIEAMGIERARGVMDEAD 298

Query: 301 LILLLKEINSKK------------------------------EISFPKNIDFIFIGTKSD 330
           L+L L + ++                                E     +   + I TK D
Sbjct: 299 LVLALVDPHAGPTTLEWLSGLLTHVKHPLMLAGHEPASEEAHENRSTSSRPILTIRTKID 358

Query: 331 L------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                     +  + D  IS+ TGEGL +L+++I  I +         +P+  RH   + 
Sbjct: 359 QDKLTGGAPPHAPDCDLTISTRTGEGLADLVDRIAEIAATAVGDPDDVVPARTRHRELIG 418

Query: 385 QTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +R L        D   ++ AE LR  S  LG +TG V VE LL++IF++FCIGK
Sbjct: 419 DALRLLTEFQA-APDMPAEVRAETLRRTSHRLGALTGQVGVEDLLEVIFAEFCIGK 473


>gi|291571683|dbj|BAI93955.1| tRNA modification GTPase [Arthrospira platensis NIES-39]
          Length = 469

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 147/470 (31%), Positives = 238/470 (50%), Gaps = 34/470 (7%)

Query: 1   MNHEKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--- 55
           ++ + ETI A++T       +I I+R+SG     + + + K     P  +S R  +G   
Sbjct: 4   ISTKSETIAAIATAIVPQQGSIGIVRMSGAEAVAIAKTLFKAPGNQPW-SSHRILYGYIH 62

Query: 56  --LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
                +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF
Sbjct: 63  HPHTQQLVDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQ-LCLQAGARLATPGEF 121

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           + RAF NG++DL +AES+A+L+ +++      ++ G+ G+L+            I + IE
Sbjct: 122 TLRAFLNGRLDLTQAESVAELVGAQSPQAASAALAGLRGKLADPIHHLRSLCLDILAEIE 181

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF E  D+   +  E+++ +  +   ++  +     GE++R G K+ I+G  N GKS
Sbjct: 182 ARVDFEE--DLPPLNESEIIHQLQEVLQQLTDILDTADRGELLRTGLKVAIVGRPNVGKS 239

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NA ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIR++DD VE+ G++R+ 
Sbjct: 240 SLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRKSDDKVEQIGVERSQ 299

Query: 294 LEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSD---------LYSTYTEE 338
           +  ++ADL+L   +          +     KN   I +  KSD         L      +
Sbjct: 300 IAAQSADLVLFTLDCEKGWTEGENEIYQQVKNRPIIVVMNKSDRLSSAQLENLRQAIINQ 359

Query: 339 YDHLISSFT------GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            D   S          +G+ +L   I + +     +        ++R    L++    LE
Sbjct: 360 LDIKPSLIIATAATLNQGITDLETSILNAVHTENLQSANLEFAINQRQAAALTRAKIALE 419

Query: 392 MASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                  D    D    +LR A  +LG++TG    E +LD IFS+FCIGK
Sbjct: 420 QVENTIGDRLPFDFWTIDLRGAIHALGEVTGEEVTESVLDRIFSRFCIGK 469


>gi|156548514|ref|XP_001606101.1| PREDICTED: similar to GTP binding protein (mitochondrial), putative
           [Nasonia vitripennis]
          Length = 478

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/473 (35%), Positives = 252/473 (53%), Gaps = 35/473 (7%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRI 60
           +  + TI+A+S+G     ++++R+SG       E +    K  PRKA LR       G  
Sbjct: 7   SSTRSTIYALSSGQGKCGVAVVRISGTDARLAIEKMTNIAKLEPRKAYLRNIRNPQTGET 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +DKGL + FP P SFTGEDS EF VHGG+AV+  ++  L+++   + A PGEF++RAF +
Sbjct: 67  IDKGLCLWFPGPNSFTGEDSVEFQVHGGVAVLASLMSALSQLQ-FQPALPGEFTKRAFFH 125

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL E E LADLI +ETE QR+ ++    G LS+LY  W   L    + IEA +DF E
Sbjct: 126 DKLDLTEIEGLADLIHAETEQQRKQALLQAHGNLSALYSSWRAILLKCLAHIEAYIDFGE 185

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE++++   ++   D+  L   I  H+S G+ GEI+RNG + VILG  N GKSSL N L 
Sbjct: 186 EENIESQVFEQCNIDLKDLTKQIEKHLSDGRKGEILRNGIRTVILGEPNVGKSSLLNRLV 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENA 299
           +++ AIVT IPGTTRDV+ +  ++ GY + ++DTAG+ + T+DI+E EGIKR   +   A
Sbjct: 246 QRNAAIVTSIPGTTRDVVELTANISGYPIVLADTAGLNKLTEDIIEIEGIKRARDQASKA 305

Query: 300 DLILLLKEIN--------------------SKKEISFPKNI---DFIFIGTKSDLYSTYT 336
           D I+L+                          +E+         + + +  K DL     
Sbjct: 306 DFIILVMNAEEYVKSCKKYNEYLSSYIKSLELEELILVDEQLASNVMVVVNKVDLLKETD 365

Query: 337 ----EEYDHLISSFTG-EGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRY 389
               EE++    S T  EG +EL+  ++                 S +RH  H+      
Sbjct: 366 KRTLEEHNLSRISCTDEEGFQELLESMRKHFESICGNPSAENPTISQERHRNHVRACHEC 425

Query: 390 LEMASLNEKDCGLDII--AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L        +   DI+  ++ +R A+  +GKITG V  E++LD IF  FCIGK
Sbjct: 426 LLKYFHIISNTDYDIVLASQEIRKAAKEIGKITGHVSTEEILDTIFKNFCIGK 478


>gi|21233655|ref|NP_639572.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770621|ref|YP_245383.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|25009496|sp|Q8P340|MNME_XANCP RecName: Full=tRNA modification GTPase mnmE
 gi|81303432|sp|Q4UNL0|MNME_XANC8 RecName: Full=tRNA modification GTPase mnmE
 gi|21115528|gb|AAM43454.1| thiophene and furan oxidation protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575953|gb|AAY51363.1| thiophene and furan oxidation protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 446

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 149/449 (33%), Positives = 236/449 (52%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN    TI A++T A    I I+RLSGP   Q+   +        R A    F    G +
Sbjct: 1   MNALPSTIVAIATAAGTGGIGIVRLSGPQSVQIAAAL-GIAGLQSRHARYARFRDAQGEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + FP+P SFTGE+  E   HG   ++  ++     +   R A  GEFS RAF N
Sbjct: 60  IDDGIAVWFPAPHSFTGEEVVELQGHGSPVLLRQLVARCIAL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       + LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRSLDGVFSRRVDAVSESLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E +      +V  ++   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 -EPLDTLGGAQVREELTRTRALLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+RE  D +E+EG++R   E++ AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDAIEREGMRRARAELQRAD 297

Query: 301 LILLLKEINSKKEISFPKN------IDFIFIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +                ++I  K DL +     +     +S+ TG+GLE
Sbjct: 298 LALIVLDARDPQAARDALGDAIDAVPRRLWIHNKCDLLAVAGPMDADAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            L  +++ + L +  + +     +  RH+  L +  ++ + A L  +   L++ AE LRL
Sbjct: 358 HLHTRLRELALGDGIESVDGEFSARTRHVDALHRAEQHADAADLELRYEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446


>gi|78188083|ref|YP_378421.1| tRNA modification GTPase TrmE [Chlorobium chlorochromatii CaD3]
 gi|123579063|sp|Q3ANQ3|MNME_CHLCH RecName: Full=tRNA modification GTPase mnmE
 gi|78170282|gb|ABB27378.1| tRNA modification GTPase trmE [Chlorobium chlorochromatii CaD3]
          Length = 473

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 152/472 (32%), Positives = 254/472 (53%), Gaps = 35/472 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRY 52
           ++ + E I A++T     A++++R+SG   F +   +  K+             +A    
Sbjct: 5   LSFQDEPIVALATPLGVGALAVVRMSGQGVFDIARKVFHKQGAPDFHLASSKGFQAHFGT 64

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
                G ++D+ + +VF SP SFT ED  EF  HGG  VV  +L+ L      RLA PGE
Sbjct: 65  IHDAQG-VVDEVIALVFRSPRSFTMEDMVEFSCHGGPVVVQHLLKALI-DAGCRLAEPGE 122

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF NG+IDLL+AE++ ++I + +E   R ++  M G LS    +  +KL H  + +
Sbjct: 123 FTRRAFLNGRIDLLQAEAIGEMIHARSESAFRTAVTQMQGRLSRQLEEMREKLLHSCALL 182

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E +LDFSE EDV+  + +E+  D+  L+ +I+  +   + G +++ G   V++G  NAGK
Sbjct: 183 ELELDFSE-EDVEFQNREELREDVQRLQGEINRLLDSYQHGRLLKEGVATVLVGSPNAGK 241

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           S+L NAL  ++ +IV+  PGTTRD +   L L   L ++ DTAG+RE ++ VE EGI+R+
Sbjct: 242 STLLNALLGEERSIVSHQPGTTRDYIEEPLLLGSTLFRLIDTAGLREGEEEVEHEGIRRS 301

Query: 293 FLEVENADLILLLKEINSKK---EISFP--------KNIDFIFIGTKSDLYSTYTEEYDH 341
           + ++  AD++L L +++      E+S           N+  + +  K D  +  TE    
Sbjct: 302 YRKIAEADVVLYLLDVSHPDYCNELSDITSLLEQASPNVQLLLVANKCDAITNPTERLAQ 361

Query: 342 LI-----------SSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRY 389
           L            ++  G+GLE L  ++ ++++   K    S+  +  RH   L +    
Sbjct: 362 LQAAMPQATVCGIAAKEGDGLEALKQQMSNMVAGLDKLHEASVLITSMRHYEALRRASDA 421

Query: 390 LEM-ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LE  A L  +    +++A  LR A  ++G+ITG V  +++L +IF +FCIGK
Sbjct: 422 LENGACLVAEHAETELVAFELRSALEAVGEITGKVVNDEILSLIFERFCIGK 473


>gi|224538904|ref|ZP_03679443.1| hypothetical protein BACCELL_03800 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519482|gb|EEF88587.1| hypothetical protein BACCELL_03800 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 466

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 149/469 (31%), Positives = 236/469 (50%), Gaps = 33/469 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-----SLRYFFG 55
           MN  ++TI A++T     AI  IR+SG    ++   I    K     A     +L +   
Sbjct: 2   MN--QDTICAIATAQG-GAIGSIRVSGADAIRITSHIFTPAKSGKTLADCKPYTLTFGKI 58

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            DG  I+D+ L+ +F +P S+TGEDS E   HG   ++  +L+ L K    RLA PGE++
Sbjct: 59  HDGEEIIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVLQLLIK-HGCRLAGPGEYT 117

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL+M  M G  S    +  ++L H  S IE 
Sbjct: 118 QRAFLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTKLRNQLLHFTSLIEL 177

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ E+++     E+      ++  IS  +    +G  I+NG  + I+G +NAGKS+
Sbjct: 178 ELDFSDHEELEFADRTELCRLADHIEGVISQLVHSFSVGNAIKNGVPVAIIGETNAGKST 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV+DI GTTRDV+    ++ G   +  DTAGIRET+D +E  GI+RTF 
Sbjct: 238 LLNVLLNEDKAIVSDIHGTTRDVIEDTTNIGGITFRFIDTAGIRETNDTIESLGIERTFQ 297

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLY------------- 332
           ++E A+++L + +           S + +   +    I +  K+DL              
Sbjct: 298 KLEQAEIVLWMIDATDATSQMNQLSGQILPRLERKHLILVFNKADLLGTAHSGEVLSAAS 357

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
           S   +     IS+   +  + L  K+ +  +         I ++ RH   L+  +  +  
Sbjct: 358 SIIPDAECIFISAKKRQNTDVLQKKLIAAANLPTITQNDVIVTNARHYEALTHALEAIRR 417

Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                  +   D +A+++R     L  I G V  + +L  IF  FCIGK
Sbjct: 418 VQQGLANNLSGDFVAQDIRECIFHLSDIAGEVTNDMVLQNIFQHFCIGK 466


>gi|326202766|ref|ZP_08192633.1| tRNA modification GTPase TrmE [Clostridium papyrosolvens DSM 2782]
 gi|325986843|gb|EGD47672.1| tRNA modification GTPase TrmE [Clostridium papyrosolvens DSM 2782]
          Length = 460

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 146/461 (31%), Positives = 238/461 (51%), Gaps = 25/461 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
           H ++TI A+ST      I +IR+SG   F   + I K  K      S    +G       
Sbjct: 2   HNEDTIAALSTPYGTGGIGVIRISGEKAFSTADKIFKASKAMEEIQSHTVTYGKIVDKES 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ LL+    P +FT ED  E   HGGI V+N +L+ + K   +R A PGEF++RA
Sbjct: 62  KDIIDEVLLLKMCKPNTFTREDVIELQCHGGIVVINRVLDLIFK-NGVRPAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLI+S+T    + ++  + G LS+        L  + + IE  +D
Sbjct: 121 FLNGRIDLSQAEAIIDLINSKTVESSKAAVSHLEGRLSARLKIIRKTLVGLLAHIEVTVD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D++  + ++VL ++  +K ++ +     + G+I+R G  IVI G  N GKSSL N
Sbjct: 181 YPEH-DIEEITGEKVLENLKNIKGELHTLAGTFERGKILREGLNIVIAGKPNVGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L+    AIVTDIPGTTRD++   +++ G   KI+DTAGIR T D+VEK G+ + +  V 
Sbjct: 240 QLSGNTKAIVTDIPGTTRDIIEEYVNINGIPAKITDTAGIRNTQDVVEKIGVNKAYEAVG 299

Query: 298 NADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYST----------YTEEYDH 341
            ADL +++       +    + ++  KN   + +  K+DL                +   
Sbjct: 300 QADLTIVVLSAETGIDDEDIEILNLVKNKKALILINKTDLADKEQVNEIKAQLENHDIIL 359

Query: 342 LISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399
             S     G+EEL   I  +    K       + ++ RH Y + + +  ++ A  +    
Sbjct: 360 KASVINARGIEELEATISELFVKGKISGNDEVLLTNSRHKYLVDRAIEDIQQALNSFSTG 419

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LD++  +++  + ++G+ITG    E ++  IFS+FCIGK
Sbjct: 420 MPLDMVTIDIKSCADNIGQITGESIDEAVMHDIFSRFCIGK 460


>gi|187735151|ref|YP_001877263.1| tRNA modification GTPase TrmE [Akkermansia muciniphila ATCC
           BAA-835]
 gi|226704777|sp|B2UPK5|MNME_AKKM8 RecName: Full=tRNA modification GTPase mnmE
 gi|187425203|gb|ACD04482.1| tRNA modification GTPase TrmE [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 449

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 141/432 (32%), Positives = 234/432 (54%), Gaps = 13/432 (3%)

Query: 20  ISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFT 76
           I++IR+SGP C  + +         +  PR+A+L      +G  +D+ L+  FP+P S+T
Sbjct: 20  IAVIRMSGPGCMDILKQCTPAAFTERLRPRRATLVCIRDAEGAAIDQALVTWFPAPASYT 79

Query: 77  GEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLIS 136
           GED+AE   HGG+ V + +L+ L +      A PGEF++RAF NG++DL +AE++ D+IS
Sbjct: 80  GEDTAEISCHGGMLVTDRLLKRLYQC-GASPAEPGEFTKRAFLNGRMDLTQAEAVMDVIS 138

Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI 196
           + +++  + +   + G + +   +  D L H+ + IEA +DF + ED+   ++ ++L  +
Sbjct: 139 AGSDLALKAAQSQLDGGIGAQVDELKDNLVHVLAHIEAYIDFPD-EDISPDTASDLLARL 197

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             ++  + + +   + G ++R G +  I G  N GKSSL N L   D AIV++I GTTRD
Sbjct: 198 RNMEEKLDTLLKTAEGGRLLREGIRTAIAGPPNVGKSSLLNTLLGYDRAIVSNIAGTTRD 257

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            +   + L G  +++ DTAG+RE+ D++E+ GI RT   +E ADL+L + + ++ +   F
Sbjct: 258 TVEESIQLAGLALRLIDTAGVRESSDVIEQAGITRTNRALETADLVLEVADASTPRVKDF 317

Query: 317 PK---NIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF--KKL 369
           P        + I  K DL  +  +        S  TGEG +EL   I    S+    +  
Sbjct: 318 PAPVLTAPRLLILNKCDLGIHPDWKAVPGIRFSCATGEGRKELEEAIIQAFSSSLPGETG 377

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428
              +  + RH + L     ++ +AS    +    +  A  LR A   LG+ITG VD E +
Sbjct: 378 SSLVAINARHQHELGLCREHVRLASESISRQESPEFTALELREALTHLGEITGAVDTEDV 437

Query: 429 LDIIFSKFCIGK 440
           L  IFS FC+GK
Sbjct: 438 LGAIFSSFCLGK 449


>gi|189467536|ref|ZP_03016321.1| hypothetical protein BACINT_03926 [Bacteroides intestinalis DSM
           17393]
 gi|189435800|gb|EDV04785.1| hypothetical protein BACINT_03926 [Bacteroides intestinalis DSM
           17393]
          Length = 466

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 150/469 (31%), Positives = 236/469 (50%), Gaps = 33/469 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-----SLRYFFG 55
           MN  ++TI A++T     AI  IR+SG    ++   I    K     A     +L +   
Sbjct: 2   MN--QDTICAIATAQG-GAIGSIRVSGADAIRITSHIFTPAKSGKALADCKPYTLTFGKI 58

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            DG  I+D+ L+ +F +P S+TGEDS E   HG   ++  +L+ L K    RLA PGE++
Sbjct: 59  HDGEEIIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVLQLLIK-HGCRLAGPGEYT 117

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL+M  M G  S    +  ++L H  S IE 
Sbjct: 118 QRAFLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTELRNQLLHFTSLIEL 177

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ E+++     E+      ++  IS  +    +G  I+NG  + I+G +NAGKS+
Sbjct: 178 ELDFSDHEELEFADRTELYRLADHIEGVISRLVHSFSVGNAIKNGVPVAIIGETNAGKST 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV+DI GTTRDV+    ++ G   +  DTAGIRET+D +E  GI+RTF 
Sbjct: 238 LLNVLLNEDKAIVSDIHGTTRDVIEDTTNIGGITFRFIDTAGIRETNDTIESLGIERTFQ 297

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDL-------------Y 332
           ++E A+++L + +           S + +   +    I +  KSDL              
Sbjct: 298 KLEQAEIVLWMIDATDATSQMNQLSGQILPRLERKHLILVFNKSDLSGTAHSDEVLSAAS 357

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
           S   +     IS+   +  + L  K+ +  +         I ++ RH   L+  +  +  
Sbjct: 358 SIIPDAECIFISAKKRQNTDVLQKKLIAAANLPTITQNDVIVTNARHYEALTHALEAIRR 417

Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                  +   D +A+++R     L  I G V  + +L  IF  FCIGK
Sbjct: 418 VQQGLANNLSGDFVAQDIRECIFHLSDIAGEVTNDMVLQNIFQHFCIGK 466


>gi|333031364|ref|ZP_08459425.1| tRNA modification GTPase mnmE [Bacteroides coprosuis DSM 18011]
 gi|332741961|gb|EGJ72443.1| tRNA modification GTPase mnmE [Bacteroides coprosuis DSM 18011]
          Length = 465

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 149/466 (31%), Positives = 241/466 (51%), Gaps = 32/466 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGL---D 57
            ++TI A++T     AI  IR+SG     + E I +   K K    + +    FG     
Sbjct: 3   NQDTICAIATAQG-GAIGTIRVSGKDAITITEKIFRPFKKDKILHEQPAYTLTFGKIIDH 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ L+ +F +P SFTGE+S E   HG   ++  ++E L K    R A PGE+++RA
Sbjct: 62  EEVIDEVLISLFKAPHSFTGENSVEITCHGSTYILQKVMELLIK-NGCRTAQPGEYTQRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL +AE++ADLI+S +    RL+M  M G  S    +  ++L HI S IE +LD
Sbjct: 121 FLNGKMDLSQAEAVADLIASTSAATHRLAMSQMRGGFSKELAELRNQLLHITSMIELELD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE EDV+  +  ++      ++  IS   +   +G  I+NG  + I+G +NAGKS+L N
Sbjct: 181 FSE-EDVEFANRDQLKALADKIEQVISKLTNSFSVGNAIKNGVPVAIIGETNAGKSTLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  +D AIV++I GTTRDV+   +++ G   +  DTAGIRET D +E  GI+RTF +++
Sbjct: 240 ALLNEDKAIVSNIHGTTRDVIEDTMNIGGITFRFIDTAGIRETHDTIESLGIERTFQKLD 299

Query: 298 NADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYST-------------Y 335
            A+++L + +           ++K +   ++   I +  KS+L +              Y
Sbjct: 300 QAEIVLWVIDAPTATEQIQQLAEKIVPRAQSKQLILVFNKSELINESERKGLEALAQTHY 359

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                  IS+   EG+E+L   + +  +         I ++ RH   L++ +  +     
Sbjct: 360 PSLTSIFISAKEKEGVEQLEKLLTNSANLPTVTQNDVIVTNMRHYEALTKALEAIHRVQD 419

Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E     D +++++R     L  I G V  + +L  IF  FCIGK
Sbjct: 420 GLEMQISGDFLSQDIRECIFHLNDIAGEVTNDMVLQNIFKNFCIGK 465


>gi|320109421|ref|YP_004185011.1| tRNA modification GTPase TrmE [Terriglobus saanensis SP1PR4]
 gi|319927942|gb|ADV85017.1| tRNA modification GTPase TrmE [Terriglobus saanensis SP1PR4]
          Length = 449

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 139/448 (31%), Positives = 234/448 (52%), Gaps = 11/448 (2%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRI 60
              ++TI AVST      I I+RLSGP    + E +   +    PR+A   +     G+ 
Sbjct: 4   TTTQDTIVAVSTPPGRGGIGIVRLSGPEARGITEKLLALETALEPRRARFAHLNDETGQR 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  ++  F +P S+TGED  E   HG   V+  I+     +   R A+ GEF+ RAF  
Sbjct: 64  IDDAVVTFFAAPNSYTGEDVIEIAAHGSPVVLEWIVRRACTL-GARPAHAGEFTERAFFR 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ DLI ++T  Q R++ E + G L+       + L  + + +EA +DF+E
Sbjct: 123 GRIDLTQAEAVRDLIDAQTIEQARVAAEQVGGSLAKRIRPCKEDLVALIALLEAGIDFAE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +D+    S ++   +  + + +   ++    G I+R G +I ++G  NAGKSSLFNALA
Sbjct: 183 -DDIDVAPSAQIEARLQAVLSPLEDLLATFAYGRILREGVRIAVIGRPNAGKSSLFNALA 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVT I GTTRDV+T  + + G  V++ DTAG+RE++D VE+ GI R+   +  AD
Sbjct: 242 ERERAIVTPIAGTTRDVVTERVSIGGIPVELMDTAGLRESEDFVEQLGIARSREALAEAD 301

Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEE 353
           L+L + ++        ++ I+  +    + +  K DL      ++     S+ TGEGL+ 
Sbjct: 302 LVLFIVDLQHGISEEERETIASLEGRPHLVVANKIDLAPLLASDFALIPTSANTGEGLDR 361

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLA 412
           L   +   L          + ++ R    +++ V  L  A          +++  ++  A
Sbjct: 362 LREALLQQLRGSQNASASGLLTNLRQRDAVARAVEALHRAIEAIHASIPHEMLLLDIYEA 421

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              L ++TG    +++L +IFS FCIGK
Sbjct: 422 LRGLDELTGSTTADEILGVIFSTFCIGK 449


>gi|290968160|ref|ZP_06559705.1| tRNA modification GTPase TrmE [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781835|gb|EFD94418.1| tRNA modification GTPase TrmE [Megasphaera genomosp. type_1 str.
           28L]
          Length = 459

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 143/461 (31%), Positives = 240/461 (52%), Gaps = 23/461 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFF 54
           M    ETI A+ T    S + IIR+SG   F V + + +     P      +     +  
Sbjct: 1   MCSTNETIAAIVTPPGESGVGIIRISGDQAFSVGDVLFRSVSAVPLAQRRDKSVQYGHIT 60

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             +G ++D+ L+++   P S+T ED  E   HGGI V+  IL  L     +RLA PGEF+
Sbjct: 61  ERNGAVIDEVLVLIMKGPHSYTAEDVLEIQCHGGIKVIQKIL-TLVLEQGVRLARPGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF NG+IDL +AE++ D+I +++E     ++  + G+LS +    +  LT   + +E 
Sbjct: 120 ERAFVNGRIDLAQAEAVMDIIQAKSEAGVTRAVRQLEGKLSEVVNDMLQNLTTFITRLEV 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +D+ E ED++     ++   +  +++ +   + + + G++IR+G  +VI G  NAGKSS
Sbjct: 180 TVDYPE-EDLEEIEVPDIAGSLQEMRDALEHMLGRARTGKMIRDGITVVINGLPNAGKSS 238

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L ++D AIVT++PGTTRDV+   + L G    + DTAGIR+TDD VE+ G+ +   
Sbjct: 239 LLNRLLEEDKAIVTEVPGTTRDVIEAWITLSGIPFCLVDTAGIRKTDDKVERIGVAKARS 298

Query: 295 EVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI----- 343
            ++ AD+ILL+ + + K +      +   K+     I  KSD+ S   ++          
Sbjct: 299 YMDTADIILLVLDGSHKLQEEEKALLQEIKDKTAWVILNKSDISSLMDKKEIEAYGIPVL 358

Query: 344 --SSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             S+ TG+G+E L   +   +LS  +      + ++ RH+    Q    ++ A    +  
Sbjct: 359 SLSARTGKGIEALQKTLLRYVLSKGWDTGADVLLANVRHIEAARQAKAAMDRALHTLQAG 418

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +D+   ++R A   LG ITG      ++  IFS+FC+GK
Sbjct: 419 LPIDLAIIDIREAWEMLGDITGQHVRADIVKEIFSRFCLGK 459


>gi|262066862|ref|ZP_06026474.1| tRNA modification GTPase TrmE [Fusobacterium periodonticum ATCC
           33693]
 gi|291379413|gb|EFE86931.1| tRNA modification GTPase TrmE [Fusobacterium periodonticum ATCC
           33693]
          Length = 455

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 140/454 (30%), Positives = 238/454 (52%), Gaps = 21/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLDGR-IL 61
           +TI A+ST      ISI+R+SG     + E I + K       +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRAKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +L+ + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEQVLQVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ E 
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPE- 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E + +   + +++++     +I   IS    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 182 EGIDDPVPENLVDNLKKASAEIKDLISSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGE 349
           IL + + + + +               I I  K D+            +    IS+ +  
Sbjct: 302 ILYVIDTSREIDEEDFRIYDIINTDKVIGILNKIDIKKEIDLSKFPKIDKWIEISALSKI 361

Query: 350 GLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIA 406
           G++ L ++I   + N+  +      + ++ RH   L +T    L +    +    +D++A
Sbjct: 362 GIDNLEDQIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEALLNIIETIDMGLPMDLMA 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 422 VDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|95929981|ref|ZP_01312721.1| tRNA modification GTPase TrmE [Desulfuromonas acetoxidans DSM 684]
 gi|95133950|gb|EAT15609.1| tRNA modification GTPase TrmE [Desulfuromonas acetoxidans DSM 684]
          Length = 458

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/457 (33%), Positives = 250/457 (54%), Gaps = 21/457 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGL---D 57
            E +TI A  T     A++I+RLSG     +       K    F    S  +++G    +
Sbjct: 4   SEDDTIIAPLTAPGHGAVTILRLSGSKSLDLVLTHFFNKSFNRFRSLLSHYFYYGFICDE 63

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  +D+ +++   SP+S+T ED  E H H  +AVV  I++   +   +R+A PGEF+ RA
Sbjct: 64  GVSIDEVMVVYMASPKSYTREDVVEIHCHSSVAVVRNIIDIFVRS-GVRIAEPGEFTYRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F+NG+IDL  AE++ADLI++++ M  +L++  M G LS    ++ D +  + + IEA +D
Sbjct: 123 FKNGRIDLSHAEAIADLIAAKSTMASQLALRQMKGALSGRVYEFKDTILSMLALIEAYID 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E ED+    +  +  D   L + +   +S    G+I+R G+ ++ILG  N GKSSL N
Sbjct: 183 FPE-EDIDKHHALSIQRDCELLLSKVEETLSGYDEGKILREGFSLLILGKPNVGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIVT+IPGTTRD++   + L GY + + DTAGIR++DD +E++G+ R   ++ 
Sbjct: 242 LLVGEDRAIVTNIPGTTRDIIQETITLHGYPITVIDTAGIRDSDDPIEQDGVSRAKNQIG 301

Query: 298 NADLILLLKEINSKKEISFPKNID------FIFIGTKSDLYSTYTEE------YDHLISS 345
           +AD+IL + + +   +IS  ++I       FIF+  K D      +E       +  IS 
Sbjct: 302 SADVILYMVDGSQPFDISIVQDIKLLPADRFIFVVNKCDKPDFDFQESQISNFINFSISV 361

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQTVRYL-EMASLNEKDCGLD 403
               G+E+LIN I   L+   +    S+  S +RH   L +   +L +     E     +
Sbjct: 362 KENTGVEQLINGILDKLNLNSRHHDESVVLSDRRHKDILVRCHAFLKDFIEAFESGHSDE 421

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +A +LR A  +LG+ITG    + +L+ IF +FCIGK
Sbjct: 422 FLALHLREALQALGEITGETTPDDILNDIFGRFCIGK 458


>gi|113478139|ref|YP_724200.1| tRNA modification GTPase TrmE [Trichodesmium erythraeum IMS101]
 gi|123056073|sp|Q10VJ7|MNME_TRIEI RecName: Full=tRNA modification GTPase mnmE
 gi|110169187|gb|ABG53727.1| tRNA modification GTPase trmE [Trichodesmium erythraeum IMS101]
          Length = 467

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 147/466 (31%), Positives = 238/466 (51%), Gaps = 30/466 (6%)

Query: 1   MNHEKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYF-F 54
           M     TI A++T       ++ I+R+SG    ++ + +     K+          Y   
Sbjct: 6   MTPRN-TIAAIATAIVPQQGSVGIVRMSGSEAMKIAQTLFHAPGKQVWETHHILYGYIRH 64

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
              G+++D+ LL++  +P S+T ED  EFH HGGI  +  +L+   +     LA PGEF+
Sbjct: 65  PHTGQLVDETLLLIMKAPRSYTREDVVEFHCHGGIIAIQQVLQLCIEA-GAELAQPGEFT 123

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF NG++DL +AES+A+L+ S++    ++++ G+ G+L+S           I + IEA
Sbjct: 124 LRAFLNGRLDLTQAESIAELVGSQSPAAAQVALAGLQGKLASPIRHLRACCLDILAEIEA 183

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF E  D+      E+   +  +  D+S  ++    GE++R G K+ I+G  N GKSS
Sbjct: 184 RIDFEE--DLPPLDESEISQKLDDILVDLSMVLATASRGELLRTGLKVAIIGRPNVGKSS 241

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NA +  D AIVTD+PGTTRDV+   L + G  V++ DTAGIRET+D VEK G++R+  
Sbjct: 242 LLNAWSHSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETEDRVEKIGVERSCQ 301

Query: 295 EVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-------- 340
             E+AD++LL  +         +      K+   I I  K D       E          
Sbjct: 302 AAESADIVLLTIDAQVGWTELDEVIYQQVKHRFLILIINKVDQVDLVHSELIRSIFYPET 361

Query: 341 ----HLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEM-AS 394
                  ++   +G+EEL   I + ++ +  +        ++R    L++    LE   +
Sbjct: 362 IKNVVATAAINNQGIEELEAAILNAVNLDNVQPENLDFAVNQRQAAALTRAKIALEQCLN 421

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + +  LD    +LR +  +LG++TG    E +LDIIFS+FCIGK
Sbjct: 422 TIKNNLPLDFWTIDLRGSIYALGEVTGEDVTESVLDIIFSRFCIGK 467


>gi|90421815|ref|YP_530185.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris BisB18]
 gi|122477629|sp|Q21CM0|MNME_RHOPB RecName: Full=tRNA modification GTPase mnmE
 gi|90103829|gb|ABD85866.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris BisB18]
          Length = 449

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/453 (37%), Positives = 252/453 (55%), Gaps = 17/453 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  ++TIFA+S+G  P+A++I+R+SGP    V E I  +  P PR+A          + 
Sbjct: 1   MHSRQQTIFALSSGRPPAALAIVRVSGPEAAIVLERIAGR-LPPPRQAMRALLHDASAQP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ FP+P S TGED AEFH+HGG AV++ ++  +    NLR A PGEF+RRAFEN
Sbjct: 60  IDDAIVLWFPAPRSATGEDVAEFHIHGGRAVLSAVIAAIGTNENLRAAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++TE QRR ++  + G L      W  ++    + +EA +DF++
Sbjct: 120 GKLDLTEAEGLDDLIHADTERQRRQALRQLQGLLGDRARDWRGEIIAASALVEAAIDFAD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV +         I  L ++I   ++Q    E +R+G  + I G  N GKS+L N LA
Sbjct: 180 EGDVPDELIAPAKAKIEILLDEIEDVLAQEGRSEKLRDGLVVAITGPPNVGKSTLMNQLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRD++ + LDL+GY V + DTAGIRE  D VE+EG++R       AD
Sbjct: 240 RREVAIVSPHAGTTRDIIEVHLDLDGYPVTVIDTAGIREAIDPVEQEGVRRARSRAAEAD 299

Query: 301 LILLLKEINSKKEISFPKNID-------FIFIGTKSDLYSTYTEEYD------HLISSFT 347
           L L L +  +  +               F  +  K D+    T E          IS+  
Sbjct: 300 LRLWLVDAQAAGDGEDALRAWMAQGQNGFWVVRNKVDVAGEPTGELSATGWPCFSISAAN 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G G+ ELI  +    +        ++ +  RH   L QT   L  A    +   +++IAE
Sbjct: 360 GRGVAELIAALGKFAAAHLG-GESALITRARHRDLLRQTADALGRAIDLPEQ--VELIAE 416

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR+A+  LG++ G VDVE +LD+IF +FC+GK
Sbjct: 417 ELRIAAHRLGQLLGRVDVEDILDVIFREFCVGK 449


>gi|189184774|ref|YP_001938559.1| tRNA modification GTPase TrmE [Orientia tsutsugamushi str. Ikeda]
 gi|189181545|dbj|BAG41325.1| tRNA modification GTP-binding protein ThdF (TrmE) [Orientia
           tsutsugamushi str. Ikeda]
          Length = 447

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 162/453 (35%), Positives = 250/453 (55%), Gaps = 19/453 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-LDGR 59
           M ++  TIFA S+    + +++ R+SG     + E +C K    PRK   R     +  +
Sbjct: 1   MTNK--TIFAQSSAKGKAGVAVFRISGGLSLLIVERLCGKFNIVPRKVYYRTIRCYITSQ 58

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++DK L++ F    SFTGED  E H HG +AV   +   + +   +RLA PGEF++RAF 
Sbjct: 59  VIDKALIVYFQGEYSFTGEDVVEIHTHGSVAVAKMLTRSILECDGVRLAEPGEFAKRAFL 118

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL  AE L DLI SET MQ + ++  M GEL  LY  W   L  I SF+E  +DF 
Sbjct: 119 NGKMDLTMAEGLVDLIESETLMQHKQAIRQMGGELEKLYSHWRGMLIKILSFVEGYIDFP 178

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + E++     +E  + I  L  +IS+H+   + GE++R+G  + I G +N GKSSL N L
Sbjct: 179 D-EEIPQSVLREAKSIINNLTQEISNHLGDARKGEVLRHGIVLAITGETNTGKSSLLNYL 237

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DIPGTTRDV+   LD+ GY + + DTAGIRE+DD +E+EGIKR+ L  +N+
Sbjct: 238 TMREAAIVSDIPGTTRDVIEAHLDIGGYPIIVRDTAGIRESDDPIEQEGIKRSLLAFKNS 297

Query: 300 DLILLLKEINSKKEIS-----FPKNIDFIFIGTKSDLY-------STYTEEYDHLISSFT 347
           D+ +L+ +  +   ++        ++  I +  K DL            ++    IS   
Sbjct: 298 DIRILMIDATNMNSVNQTIAHLLNDVYTILVINKIDLVNYRYDGSRLPCDKPIVAISLLK 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
             GL+ L+ +I S              + +R+   L+Q +  L++ +L   +  L + AE
Sbjct: 358 QVGLDRLMAEIVSYAEKIADPGNVPAITRERYRNSLNQALELLQLVNL---ENDLVLAAE 414

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LR+A   L  ITG + ++ +L  IF+ FCIGK
Sbjct: 415 DLRMAIRYLEHITGKIKIDDILAEIFASFCIGK 447


>gi|255020153|ref|ZP_05292222.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970295|gb|EET27788.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Acidithiobacillus
           caldus ATCC 51756]
          Length = 449

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 152/446 (34%), Positives = 252/446 (56%), Gaps = 16/446 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKG 64
           +TI A +T    + + I+RLSGP    +   +C++++P+ PR+A L+ F+   G  LD+G
Sbjct: 9   DTIVAPATAMGEAGVGILRLSGPRALAIARALCRRQRPWEPRRAYLQRFYDDRGGALDQG 68

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ FP+P SFTGED  E   HG   V+  +L++ A+    R A PGEFS RAF NG++D
Sbjct: 69  IVLYFPAPNSFTGEDVVELQGHGSPLVLQ-LLQQSARRLGARDARPGEFSERAFLNGRMD 127

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE LADLI +++E Q R ++  + G  S    +  + +  + +  EA LDFSE ED+
Sbjct: 128 LAQAEGLADLIHAQSESQARAALASLEGRFSEKINELREAILQVLALCEAGLDFSE-EDL 186

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +     +   +   +  + S + Q + G  +  G ++ ++G  N GKSSL NALA ++ 
Sbjct: 187 GSAHRDALEQALKTSQRRLESLLQQARQGARLARGARVALIGRPNVGKSSLLNALAGRES 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT I GTTRD++  +L + G  V++ DTAG++++ D VE+EGI+R+   V ++  +LL
Sbjct: 247 AIVTAIAGTTRDLVREELQIGGLTVELVDTAGLQDSADPVEREGIRRSRATVASSQWVLL 306

Query: 305 LKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSFTGEGLEEL 354
           + +       +  + ++   +     +  K DL +            ++S+ TG GL+ L
Sbjct: 307 VADAAAGWKSDDARILAELDSQRLTIVWNKGDLVAKAPVLPEPRPQLVVSARTGAGLDAL 366

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
             +++  L    +  PFS  +  RH++ L +    L  A+        +++AE LR A  
Sbjct: 367 RMELQRSL-GAVEAAPFS--ARNRHVHALEECGNALTEAATALSMGNEELLAECLRAAGA 423

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           SL  +TG +DVE++L  IFS+FCIGK
Sbjct: 424 SLATVTGAMDVEEILGAIFSQFCIGK 449


>gi|78224743|ref|YP_386490.1| tRNA modification GTPase TrmE [Geobacter metallireducens GS-15]
 gi|123570636|sp|Q39PQ9|MNME_GEOMG RecName: Full=tRNA modification GTPase mnmE
 gi|78195998|gb|ABB33765.1| tRNA modification GTPase trmE [Geobacter metallireducens GS-15]
          Length = 457

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 141/458 (30%), Positives = 231/458 (50%), Gaps = 22/458 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LD 57
           + ++TI A+ T      I IIR+SGP    +   I ++        S R+++G       
Sbjct: 2   YLEDTIAAIGTPVGEGGIGIIRVSGPDVPAIARRIVRRVNENGDFVSHRFYYGTVVDPES 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ + ++  +P SFT ED  E   HGG  V   +L+ + +    R A PGEF+RRA
Sbjct: 62  RDTVDEVMAVLMRAPRSFTREDVLEIQCHGGYLVTRRVLDAVLQC-GARPAEPGEFTRRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL++AE++ D+I S+TE    L+     G LS         L H  + +EA +D
Sbjct: 121 FLNGRIDLVQAEAVIDVIRSKTEAALNLAQHQREGRLSERLKAVQGCLRHSLALVEAFID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F ++E V   S  E+          I   +     G ++R+G  ++I G  N GKSSL N
Sbjct: 181 FPDDE-VDPASRVEIEAKAREASGRIEELLEGFDEGRVLRDGVSVLIAGKPNVGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L ++  AIVT +PGTTRD++   +++ G  +++ DTAGIRET+D+VE+EG++ T  ++ 
Sbjct: 240 TLLQEKRAIVTSVPGTTRDIIEEVVNVRGLPLRMLDTAGIRETEDVVEQEGVRLTLEKIP 299

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISS 345
            ADLIL + +       + +  ++       I +  KSDL             +   IS+
Sbjct: 300 QADLILFVLDGSRPFDDDDRMILAALAERRVIVVTNKSDLPVTLRIPGELEGVHTVAIST 359

Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
            TG G+++L   +     +        +   S  RH   L +    + +   N      L
Sbjct: 360 ATGAGIDDLREAVFETFIHGRAIDSREYVALSQTRHRDALVKARGRIAVFFANLAAGNDL 419

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I+A +LR A  ++G++TG    + +L++IF +FCIGK
Sbjct: 420 EILAVDLRDALDAVGEVTGETTPDDILELIFQRFCIGK 457


>gi|329960747|ref|ZP_08299071.1| tRNA modification GTPase TrmE [Bacteroides fluxus YIT 12057]
 gi|328532462|gb|EGF59260.1| tRNA modification GTPase TrmE [Bacteroides fluxus YIT 12057]
          Length = 461

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 141/465 (30%), Positives = 233/465 (50%), Gaps = 29/465 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-----KKKKPFPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP    +   I       KK    +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGCIRVSGPEAIDITSRIFTPAAAGKKLEDCKPYTLTFGRI 57

Query: 56  L-DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             D  ++D+ L+ +F +P S+TGE+S E   HG   ++  +L+ L K    R+A PGE++
Sbjct: 58  YEDAEVVDEVLVSLFRAPHSYTGENSTEITCHGSNYILQKVLQLLIK-NGCRMAKPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +R+F NGK+DL +AE++ADLI+S +    RL+M  M G  S       D+L H  S IE 
Sbjct: 117 QRSFLNGKMDLSQAEAVADLIASSSAATHRLAMNQMRGGFSKELAALRDQLLHFTSLIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ E+++     E+      ++  IS  +    +G  I++G  + I+G +NAGKS+
Sbjct: 177 ELDFSDHEELEFADRSELCQLAGSIEKVISRLVHSFSVGNAIKSGVPVAIIGETNAGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIV+DI GTTRDV+    ++ G   +  DTAGIRET D +E  GI+RTF 
Sbjct: 237 LLNVLLNEEKAIVSDIHGTTRDVIEDTANIGGITFRFIDTAGIRETSDAIENLGIERTFQ 296

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--- 342
           +++ A+++L + +           S++ +   +    I +  K+DL    +         
Sbjct: 297 KLDQAEIVLWMIDATDASAQISQLSEQILPHCEGKQLILVLNKADLVEKSSNTISINLPE 356

Query: 343 ------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                 IS+     ++ L   + +  +         I ++ RH   LS  +  +      
Sbjct: 357 NIKSIRISAKEKMNIDGLQQMLITAANLPIVTQNDIIVTNIRHYEALSHALEAIHRVQQG 416

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +   D +++++R     L  I G V  + +L  IF  FCIGK
Sbjct: 417 LANNLSGDFVSQDIRECIFHLNDIAGEVTNDMVLQNIFGHFCIGK 461


>gi|313887681|ref|ZP_07821363.1| tRNA modification GTPase TrmE [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846290|gb|EFR33669.1| tRNA modification GTPase TrmE [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 459

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 151/461 (32%), Positives = 249/461 (54%), Gaps = 23/461 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGL 56
           M +  +TI A+ST    + I+I+R+SG     + + I      KK          Y    
Sbjct: 1   MANLNDTIAAISTAIGEAGIAIVRMSGDDSVNIIDEIFVSASGKKMAEAENRKFLYGHIA 60

Query: 57  DG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           DG +++D+ L++    P S+T ED  E H HGG+  V  IL  L      RLA  GEF++
Sbjct: 61  DGDKLIDEVLVVKMKGPHSYTAEDIVEIHCHGGVVSVKRILN-LILSKGARLAEKGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           R F NG+IDL +AE++ D+I ++T++   + +  +SG LS +  +  D+L  +++ I A+
Sbjct: 120 RGFLNGRIDLTQAEAVIDMIKAKTDISFDMGLNQLSGALSEVLNKLKDELVSMQALIVAN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF + ED+++ +  +++     +   + + +   K   ++R+G   VILG  N GKSSL
Sbjct: 180 IDFPD-EDIEDAAYHDLMERSDKILEKMDNLLDNSKNSRLLRDGINTVILGKPNVGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L K D AIVTDI GTTRD++   ++L+G L+KI+DTAGIRETDD VEK G+     +
Sbjct: 239 LNGLLKYDRAIVTDIAGTTRDIIEDYINLDGVLLKITDTAGIRETDDEVEKIGVNIAREK 298

Query: 296 VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------ 343
           ++ ADL++ + +I      + ++ ++  K+   I I  K DL    ++E           
Sbjct: 299 LKEADLVIAIFDISRDFDKDDEEILNLIKDKKHITILNKDDLDQKISDEEIEKYFKDDYL 358

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRY-LEMASLNEKD 399
             S    E ++++ N I  +  +   ++   SI S+ RH+  L +  +  LE+    +K 
Sbjct: 359 RLSVMENESVKKIENLIIDLFFDGELQISSDSILSNIRHINALKEAKKALLEVNESLKKK 418

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LD+I  +L      + +ITG +  E +LD +FS FCIGK
Sbjct: 419 VFLDLIEVDLENVIGHISEITGTITTEDILDRVFSDFCIGK 459


>gi|90194076|gb|ABD92599.1| ThdF [Nicoletella semolina]
          Length = 441

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 148/444 (33%), Positives = 235/444 (52%), Gaps = 26/444 (5%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      I I+R+SGP    V + +   K P PR A    F   +  ILD+G+ + F +P
Sbjct: 1   TPIGRGGIGILRVSGPLASTVAQTVLG-KCPKPRVADYLPFRDENNDILDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ + K+  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  HSFTGEDVLELQGHGGQVILDLLLQRILKIHGVRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S    Q ++ + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSHKINQLVEAVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
            + +  +   + +   Q K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 ESKLNDIIAQVDAVRYQAKQGTILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD ILL+ + N  +
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWSEIEQADHILLMIDSNQSQ 298

Query: 313 EISF-----------PKNIDFIFIGTKSDLYST-----------YTEEYDHLISSFTGEG 350
            ++F           P N+    I  K DL                      +S+ T  G
Sbjct: 299 AVNFKTEYADFLQKLPPNLPLTVIRNKVDLSGENEGIEALSQTDRANTTVIRLSAQTQLG 358

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENL 409
           ++ L   +K  +  +         + +RHL  L+    +L+   +        +++AE L
Sbjct: 359 VDLLREHLKKSMGYQ-SSTEGGFIARRRHLEALNLAANHLQRGHVQLTQFFAGELLAEEL 417

Query: 410 RLASVSLGKITGCVDVEQLLDIIF 433
           RL   +L +ITG    + LL  IF
Sbjct: 418 RLVQNALSEITGQFTSDDLLGNIF 441


>gi|114326676|ref|YP_743833.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Granulibacter bethesdensis CGDNIH1]
 gi|122328339|sp|Q0BW92|MNME_GRABC RecName: Full=tRNA modification GTPase mnmE
 gi|114314850|gb|ABI60910.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Granulibacter bethesdensis CGDNIH1]
          Length = 440

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 175/444 (39%), Positives = 261/444 (58%), Gaps = 14/444 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +ETIFA+++GA  +AI++IR+SGP+       +C    P  RK+SLR      G ILD+G
Sbjct: 3   QETIFALASGAGRAAIAVIRISGPATRNTVTHLCG-TLPPQRKSSLRRLRNRSGEILDQG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F  P SFTGED AE H+HGG AV+ G+ + L  +  LR A  GEF+RRAF NGK+D
Sbjct: 62  IILWFAGPGSFTGEDCAELHLHGGNAVIEGMADALVDL-GLRPAEAGEFTRRAFLNGKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE++ADLI +ET  QRR +++ + G LS     W   LT + ++ E  +DF + ED+
Sbjct: 121 LTEAEAVADLIDAETSAQRRQALQQLDGGLSRQLETWTATLTRVLAWQETLIDFPD-EDL 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                  +  D+L L+ +++  +++G   E +R G    ILG  NAGKSSL N+LA +D 
Sbjct: 180 PAEVDAALRTDLLLLRQEMAQALNEGAKAEKLREGLIFTILGKPNAGKSSLLNSLASRDA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+  PGTTRD + + L L G  V + DTAG+R++ D +E EG++R     E+ADL+L 
Sbjct: 240 AIVSSQPGTTRDTIEVRLVLAGVPVTLIDTAGLRDSADSIEAEGVRRALARAESADLVLR 299

Query: 305 LKEINSKKEISFPKNIDFI-------FIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELIN 356
             +I++  E  F               IGTKSDL  T     D + +S+ TG+G+E L  
Sbjct: 300 TVDISTATEADFSAEQWPGSSEARSLMIGTKSDLPYTPPSSPDIVLVSTLTGDGMERLKT 359

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
            +++           +  +  RH   L   +++LE A     +   ++ AE +RLA  ++
Sbjct: 360 MLEAEARALTSHATGAPLTRARHRAALQDAIQHLEDAESARLE---ELRAEEIRLARQAV 416

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G++TG + VEQ+LD +FS FCIGK
Sbjct: 417 GRVTGQIGVEQILDHVFSSFCIGK 440


>gi|90194072|gb|ABD92597.1| ThdF [Volucribacter psittacicida]
          Length = 436

 Score =  391 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 149/439 (33%), Positives = 238/439 (54%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      I I+R+SGP    V + +   K P PR A    F   DG ILD+G+ + F +P
Sbjct: 1   TAIGRGGIGILRVSGPQASNVAQAVLG-KCPKPRMADYLPFKDADGTILDQGIALYFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  V++ +L+ + ++ ++RLA PGEFS +AF N K+DL +AE++A
Sbjct: 60  HSFTGEDVLELQGHGGQVVLDLLLKRILQLDHIRLARPGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S    Q +D+L ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDANSEQAARSALKSLQGEFSHKINQLVDQLIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   ++    + K G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI G
Sbjct: 179 EGHLQQIIQQLNQVQQEAKQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRD+L   + ++G  + I DTAG+R+  D VEK GI R + E++ AD+ILL+ +  +  
Sbjct: 239 TTRDILREHIHIDGMPLHIIDTAGLRDATDEVEKIGIHRAWNEIKQADMILLMLDSTAPD 298

Query: 313 E-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELI 355
                          P +I    I  K DL           +     +S+ T  G++ L 
Sbjct: 299 NQNMEKVRSEFLQKLPPHIPVTIIRNKVDLTGETEGIQQQQDYTVIQLSAKTQYGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L++  ++L    +   +    +++AE LRLA +
Sbjct: 359 EHLKQAMGYQSGT-EGGFLARRRHLEALNKAAQHLAQGHIQLTQYFAGELLAEELRLAQL 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
            L +ITG    + LL  IF
Sbjct: 418 QLSEITGQFTSDDLLTHIF 436


>gi|19335743|gb|AAL85492.1| GTP-binding protein isoform IV [Homo sapiens]
          Length = 524

 Score =  391 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 172/493 (34%), Positives = 254/493 (51%), Gaps = 62/493 (12%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLN--------------------------------DILFLKNDISSHISQGKL 212
           +    ++  +                                ++  L+  + +H+   + 
Sbjct: 215 EEGVLEQGGSTWWWGRKTPHISPQRLPSLSLSACLLSPTADIEVRALQVALGAHLRDARR 274

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G+ +R+G  +V+ G  NAGKSSL N L++K V+IV+  PGTTRDVL   +DL G+ V +S
Sbjct: 275 GQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLS 334

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------------- 318
           DTAG+RE    VE+EG++R    +E ADLIL + + +     S                 
Sbjct: 335 DTAGLREGVGPVEQEGVRRARERLEQADLILAMLDASDLASPSSCNFLATVVASVGAQSP 394

Query: 319 ---NIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELINKIKSILSNKFKKL 369
              +   + +  KSDL S         +      S  TGEGL+ L+  ++  L+      
Sbjct: 395 SDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLDGLLEALRKELAAVCGDP 454

Query: 370 PFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQ 427
                + +  RH +HL   +  L       +   L + AE LR+A   L ++TG    E+
Sbjct: 455 STDPPLLTRARHQHHLQGCLDALGHYK---QSKDLALAAEALRVARGHLTRLTGGGGTEE 511

Query: 428 LLDIIFSKFCIGK 440
           +LDIIF  FC+GK
Sbjct: 512 ILDIIFQDFCVGK 524


>gi|329664338|ref|NP_001193147.1| tRNA modification GTPase GTPBP3, mitochondrial [Bos taurus]
 gi|297476305|ref|XP_002688588.1| PREDICTED: GTP binding protein 3 (mitochondrial) [Bos taurus]
 gi|296486093|gb|DAA28206.1| GTP binding protein 3 (mitochondrial) [Bos taurus]
          Length = 521

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 173/490 (35%), Positives = 251/490 (51%), Gaps = 59/490 (12%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+     + +   +  P  RKA LR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALQSLTAPRDLPLARKACLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DFSE++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGDLCRGWAETLTKALAHVEAYIDFSEDDNL 214

Query: 185 QN------------------------------FSSKEVLNDILFLKNDISSHISQGKLGE 214
           +                               F      +++  L+  +  H+   + G+
Sbjct: 215 EEGVLDQGGSPWGWEAETSGIQPPQVLLLSLSFPPSTADSEVRKLEVALGVHLRDARRGQ 274

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
            +R+G  +V+ G  NAGKSSL N L++K V+IV+  PGTTRDVL   +DL G+   +SDT
Sbjct: 275 RLRSGAHVVVAGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPALLSDT 334

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---------------KKEISFPKN 319
           AG+RE    VE+EG++R    +E ADLIL + + +                      P  
Sbjct: 335 AGLREGVGPVEQEGVRRAQKRLEQADLILAVLDASDLASPASCNFLDTVVIPAGARNPNG 394

Query: 320 --IDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                + +  KSDL      +          +S  TGEGL+ L+  +K  L+        
Sbjct: 395 SRQRLLLVLNKSDLLPAGRSDLHPDLPSHLLLSCLTGEGLDGLLEALKKELAALCGDPST 454

Query: 372 S-IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
             + +  RH +HL   +  L      +    L + AE LR+A   L  +TG    E++LD
Sbjct: 455 GPLLTRSRHQHHLRGCLDALGQYKQAK---DLALAAEALRVARGHLSHLTGGGGTEEILD 511

Query: 431 IIFSKFCIGK 440
           IIF  FC+GK
Sbjct: 512 IIFRDFCVGK 521


>gi|313900904|ref|ZP_07834394.1| tRNA modification GTPase TrmE [Clostridium sp. HGF2]
 gi|312954324|gb|EFR36002.1| tRNA modification GTPase TrmE [Clostridium sp. HGF2]
          Length = 443

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 144/446 (32%), Positives = 243/446 (54%), Gaps = 15/446 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR---IL 61
            +TI A+ST A+  AISIIR+SG     + + I        +  ++ Y +  D     ++
Sbjct: 3   NDTIAAISTAAVDGAISIIRMSGADALSIADSILNFNVGEKKSHTISYGYVYDQEHDELI 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ VF +P++FT ED  E + HGG  +   IL  L      RLANPGEF++RAF NG
Sbjct: 63  DEVLVSVFRAPKTFTCEDIVEINCHGGRFITKKIL-RLCLAHGARLANPGEFTQRAFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I ++T+   R++++G+ G +  L    I  L  I + IE ++D+ E 
Sbjct: 122 RIDLTQAEAVNDMIQADTDENARMAVQGIRGSVRKLLEPLIQDLLDIIANIEVNIDYPEY 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +DV+  SS  +          I   + + + G++++ G K  I+G  N GKSSL NAL +
Sbjct: 182 DDVEQLSSDIIQPKAEEWMMRIRQILDRAQSGQLLKEGIKTAIVGKPNVGKSSLLNALLE 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRD++   + L+G  + + DTAGIR+T+D+VE+ GI+R+   +  A L
Sbjct: 242 EEKAIVTDIAGTTRDIVEGHIHLQGLTLNLIDTAGIRDTEDVVEQIGIRRSLQAISEAQL 301

Query: 302 ILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           ++++       +   ++ +   K+   I +  K+D+    +   + +  S     +E L+
Sbjct: 302 VIVVLDSSHALDAQDEELLELTKDKTRIIVYNKTDI----SHRCEGICISAASGEIEPLM 357

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
            KI  +       L   +  ++R +  + +    +  A    K    LDI+A +++ A  
Sbjct: 358 AKIHELFDGHQLVLQEPLLQNERQISLMMKAESCMRQALAAMKSKMELDIVAIDIQEAYT 417

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L +I G V  E LLD +FS FC+GK
Sbjct: 418 ALKEILGEVHREDLLDTLFSNFCLGK 443


>gi|149605447|ref|XP_001518750.1| PREDICTED: similar to mitochondrial GTP-binding protein 1
           [Ornithorhynchus anatinus]
          Length = 494

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 172/462 (37%), Positives = 256/462 (55%), Gaps = 30/462 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFI-CKKKKPFPRKASLRYFFGLDG-RILDKG 64
           TIFA+S+G     +++IR SGP+       +  + + P PR A+L      D    LD+G
Sbjct: 35  TIFALSSGHGKCGVAVIRTSGPASGPALLRLMARLELPRPRTATLSLILDPDSSEPLDRG 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGED AE HVHGG AVV+G+L+ L  +P LR A  GEF++RAF+NGK+ 
Sbjct: 95  LVLWFPGPHSFTGEDCAELHVHGGPAVVSGVLQALGSLPGLRPAEAGEFTKRAFQNGKLG 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E L DLI +ETE QRR ++  ++GEL  LY  W + LT + + +EA +DFSE++++
Sbjct: 155 LTEVEGLGDLIHAETEAQRRQALRQLAGELGRLYQGWSETLTRVLAHVEAYIDFSEDDNI 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +     +V   +  L+ +I  H+   + GE +R+G ++VI G +NAGKSSL N L +K  
Sbjct: 215 EEGVLADVNTSVRGLQAEIQGHLQDARRGERLRSGVQVVIAGPTNAGKSSLLNLLCQKPT 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+ + GTTRDV+   L++ G+ V +SDTAG+R T D VE+EG++R    +  AD++L 
Sbjct: 275 AIVSPVAGTTRDVVESALNIGGFPVLLSDTAGLRATQDPVEREGVRRAQDRLTQADIVLA 334

Query: 305 LKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEE------------YDH 341
           + +       S                  + +  K+DL +  + +               
Sbjct: 335 VLDATDIASDSSHLFLETMRGQGDPTRPCLLVLNKADLLTPGSHQGLVGIFQGWGLTPVL 394

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYL-EMASLNEK 398
           L+S  TGEG+E L++ +K  L+          P  +  RH  HL   +  L      +E+
Sbjct: 395 LMSCKTGEGVEGLLDALKEELAAICGDPAVGSPSLTQTRHRRHLHDCLAALGRYQQWHER 454

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  L       R A   LG+ITG V   ++LD+IF  FCIGK
Sbjct: 455 DLALAAEEL--RAARGHLGRITGRVGAAEILDVIFRDFCIGK 494


>gi|325280484|ref|YP_004253026.1| tRNA modification GTPase mnmE [Odoribacter splanchnicus DSM 20712]
 gi|324312293|gb|ADY32846.1| tRNA modification GTPase mnmE [Odoribacter splanchnicus DSM 20712]
          Length = 464

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/464 (33%), Positives = 243/464 (52%), Gaps = 29/464 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLD-G 58
             E I AVST     AI+++R+SG  C  + + I      KK    +  ++ +   L+ G
Sbjct: 3   TSEVICAVSTAPGIGAIAVLRMSGTGCIALTDRIFESPSGKKLTGAKANTVHFGRILEEG 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            +LD+ L+ +F +P SFTGE+S E   HG + +   +L+ L      RLA PGEF++RAF
Sbjct: 63  CLLDEVLVTIFHAPHSFTGEESVEIACHGSLYIQQRLLQLLV-NQGARLATPGEFTQRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    R++++ M G  S+   +   +L HI S +E +LDF
Sbjct: 122 LNGKMDLSQAEAVADLIASSSAASHRMALKQMKGGFSAELMKLRAELLHITSLLELELDF 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           SE EDV+     E+      +   ++       LG +I+NG  + I+G++N GKS+L NA
Sbjct: 182 SE-EDVEFADRSELRRIAGNIDELLTRLCRSFSLGNVIKNGVPVAIVGNTNVGKSTLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++D AIV+DI GTTRDV+   ++L G   +  DTAGIR T D VE  GI+RTF ++  
Sbjct: 241 LLREDRAIVSDIAGTTRDVIEDTINLNGITFRFIDTAGIRATSDEVENIGIERTFAKIGQ 300

Query: 299 ADLILLLKEINSKKE----------ISFPKNIDFIFIGTKSDLYSTY-----------TE 337
           A ++LLL ++N   E               +   I +  K+D                + 
Sbjct: 301 ASVVLLLTDLNRGVESFEEYYHQVKSRLTSDAKLIIVLNKTDQVEDLLTPQETIRLFTSG 360

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
           E    IS+ TG  L+ LI ++   ++         I S+ RH   L      +E  +   
Sbjct: 361 EEIIPISARTGANLDRLIQELTRTVNLNTLNTSDVIVSNVRHYEALRNARTAIERVNEGL 420

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E     + I++++R     LG+ITG +  +++L  IF  FCIGK
Sbjct: 421 ESGLSGEFISQDIRECLHYLGEITGEITTDEVLGNIFKNFCIGK 464


>gi|296392434|ref|ZP_06881909.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PAb1]
          Length = 426

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/430 (33%), Positives = 228/430 (53%), Gaps = 23/430 (5%)

Query: 30  CFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGI 89
             Q+   +  ++    R A    F    G+++D+GL + FP P SFTGED  E   HGG 
Sbjct: 1   AGQMAVAVSGRQL-KARHAHYGPFLDAGGQVIDEGLSLYFPGPNSFTGEDVLELQGHGGP 59

Query: 90  AVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEG 149
            V++ +++   ++   R A PGEFS RAF N K+DL +AE++ADLI + +E   R ++  
Sbjct: 60  VVLDLLVQRCLEL-GARQARPGEFSERAFLNDKLDLAQAEAIADLIEASSEQAARNALRS 118

Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209
           + GE S       ++L  +R ++EA +DF E E++   +   VL  +  ++ ++S+   +
Sbjct: 119 LQGEFSRRVHALTEQLISLRIYVEAAIDFPE-EEIDFLADGHVLGLLEKVRTELSTVQRE 177

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
              G ++R+G  +VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL   + ++G  +
Sbjct: 178 ASQGALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 237

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPK 318
            + DTAG+R+T+D VEK G++R    +  AD +LL+ +  + +               P+
Sbjct: 238 HVVDTAGLRDTEDHVEKIGVERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPE 297

Query: 319 NIDFIFIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                 I  K+D       L  +        +S+ TG GLE L   +K+ +  + +    
Sbjct: 298 PGKVTLIRNKADLSTESIGLEESADGHVTITLSARTGAGLELLREHLKACMGFE-QTAES 356

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAENLRLASVSLGKITGCVDVEQLLD 430
              + +RHL  L Q  + L+         G  +++AE+LR A   LG+ITG    + LL 
Sbjct: 357 GFSARRRHLEALRQAGQALKHGHSQLIHNGAGELLAEDLRQAQQHLGEITGAFTPDDLLG 416

Query: 431 IIFSKFCIGK 440
            IFS FCIGK
Sbjct: 417 RIFSSFCIGK 426


>gi|319954737|ref|YP_004166004.1| tRNA modification gtpase trme [Cellulophaga algicola DSM 14237]
 gi|319423397|gb|ADV50506.1| tRNA modification GTPase trmE [Cellulophaga algicola DSM 14237]
          Length = 470

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 151/470 (32%), Positives = 247/470 (52%), Gaps = 35/470 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDG- 58
           +++TI A++T +   AI+IIRLSG     +          KK    +  ++     +DG 
Sbjct: 3   QQDTIVALATPSGAGAIAIIRLSGNDAITIASNHFVSRKGKKLSNQKTHTILLGHIVDGD 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           RILD+ L  +F  P S+TGE+  E   HG   +   I++ L      R A+ GEF+ RAF
Sbjct: 63  RILDEVLASIFKGPNSYTGENIVEISCHGSTYIQQEIIQ-LFLRNGCRTADAGEFTLRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGKIDL +AE++AD+I+S+     +++++ M G  S+   +   +L +  S IE +LDF
Sbjct: 122 LNGKIDLSQAEAVADVIASDNAASHQIAIQQMRGGFSNEIKELRAELMNFASLIELELDF 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           SE EDV+  +  +  + I  +   +   I    +G +I+NG  + I+G  N GKS+L N+
Sbjct: 182 SE-EDVEFANRAQFQDLINRITLVLKRLIDSFAVGNVIKNGIPVAIVGEPNVGKSTLLNS 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRD +  +L ++G   +  DTAGIRET DIVE  GIK+TF +++ 
Sbjct: 241 LLNEDRAIVSDIAGTTRDTIEDELSIDGIGFRFIDTAGIRETQDIVEGIGIKKTFEKIKQ 300

Query: 299 ADLILLLKE---INSKKEISFPK-----------NIDFIFIGTKSDLYSTYT-------- 336
           A+++L L +   I  KK+I   K               + +  K+D  +T T        
Sbjct: 301 AEVVLYLIDGALIKEKKQIDALKIEIEKIKNQFPQKSILLLVNKADKIATETTTLISSEM 360

Query: 337 -----EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                +     I++ TGEG+E+L  ++  +++    +   +I ++ RH   L +    ++
Sbjct: 361 ASLSAQLKTIFIAAKTGEGVEDLKEELLGLINTGALRNNETIVTNSRHYNSLLKAFEEIQ 420

Query: 392 MASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 +     D++A ++R A     +ITG +  + LL  IF+ FCIGK
Sbjct: 421 KVQYGMDSGFSGDLLAIDIRQALFHFSEITGEISSDDLLGNIFANFCIGK 470


>gi|325922757|ref|ZP_08184491.1| tRNA modification GTPase trmE [Xanthomonas gardneri ATCC 19865]
 gi|325546753|gb|EGD17873.1| tRNA modification GTPase trmE [Xanthomonas gardneri ATCC 19865]
          Length = 446

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 148/449 (32%), Positives = 238/449 (53%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    I I+RLSGP   Q+   +       PR A    F    G +
Sbjct: 1   MSSSPSTIVAIASAAGTGGIGIVRLSGPQAAQIAAAL-GIATLQPRHARYARFRDAQGEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + FP+P SFTGED  E   HG   ++  ++     +   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFPAPHSFTGEDVLELQGHGSPVLLRQVVARCIAL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       D LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRSLDGVFSRRVDAVSDSLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E +      +V + +   ++ ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 -EPLDTLGGTQVRDGLTHARSLLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E++ AD
Sbjct: 238 GSERAIVTDVAGTTRDTLQETIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELQRAD 297

Query: 301 LILLLKEINSKKEISFPKNIDFI------FIGTKSDLY--STYTEEYDHLISSFTGEGLE 352
           L L++ +    +                 +I  K DL   +   +     +S+ TG+GLE
Sbjct: 298 LALIVLDARDPQAARDAIGDAIDVVPRQLWIHNKCDLLVDALKLDSDAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++ + L +  + +     +  RH+  L +  ++ + A L      L++ AE LRL
Sbjct: 358 QLHIRLRELALGDGVESVDGEFSARTRHVEALRRAEQHADAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  ++LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKLSADELLGKIFSSFCIGK 446


>gi|301064536|ref|ZP_07204932.1| tRNA modification GTPase TrmE [delta proteobacterium NaphS2]
 gi|300441284|gb|EFK05653.1| tRNA modification GTPase TrmE [delta proteobacterium NaphS2]
          Length = 461

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 149/463 (32%), Positives = 233/463 (50%), Gaps = 25/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR----YFFGL 56
           M   ++TI A++T    + I IIR+SGP   +  E I K K P     S R    Y +  
Sbjct: 1   MPSTEDTIAAIATPVGQAGIGIIRISGPDSLETAEKIFKPKTPHTALKSHRLYMGYVYDP 60

Query: 57  D-GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           D G+++D+ LL    +P S+T ED  E + H G  ++  IL  +      RLA PGEF++
Sbjct: 61  DSGKVIDEVLLSYMAAPNSYTREDVVEINSHSGYTLLFKIL-TILTGLGARLARPGEFTQ 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DL+++ +E    L+ + + G +         +  HI +  EA 
Sbjct: 120 RAFLNGRIDLSQAEAVVDLMNARSERGLALAAQQIQGAIKRDMLALRKEAVHILANAEAA 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF E ED+++    E    I          + +     +  +G   VI G  N+GKSSL
Sbjct: 180 IDFPE-EDIEHLFRSEGAETIQKQLIHPIDILIKAHAERVWVDGINTVIAGRVNSGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  +  AIVTDIPGTTRDV+    ++ G  ++I DTAGIR+ +D VEK GI     +
Sbjct: 239 LNRLLNETKAIVTDIPGTTRDVIEATFNVGGIPIRIMDTAGIRKVNDTVEKMGIDLALQK 298

Query: 296 VENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYST--YTEEYD------- 340
              ADL+L + +       +    +   +N   + +  K DL     + E+ D       
Sbjct: 299 TAEADLLLFVIDRSRPINRDDMDLLEQGENKKALVVMNKIDLPPAPDFAEKADSLSRFSV 358

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTV-RYLEMASLNE 397
             IS+ TGEG++ L   IK  + +   +   +     + RH   L +   ++L  +    
Sbjct: 359 LEISALTGEGIDHLKEAIKDTILSDNAQTSATSRAVPNLRHRQALLKARDQFLCASKSAR 418

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           K+  ++I+A  LR     LG+ITG    +++LD IFS+FC+GK
Sbjct: 419 KNIPMEIVAFELRNGLDHLGEITGETIDDEILDSIFSQFCMGK 461


>gi|78776726|ref|YP_393041.1| tRNA modification GTPase TrmE [Sulfurimonas denitrificans DSM 1251]
 gi|123550691|sp|Q30T75|MNME_SULDN RecName: Full=tRNA modification GTPase mnmE
 gi|78497266|gb|ABB43806.1| tRNA modification GTPase trmE [Sulfurimonas denitrificans DSM 1251]
          Length = 446

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 142/447 (31%), Positives = 240/447 (53%), Gaps = 14/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A++T     +I+IIR+SG    ++   I  K    PR ASL   +   G ++D+ 
Sbjct: 3   EDTISAIATANGIGSIAIIRISGDRALEIASKITHKDNFTPRYASLSNIYDFHGELIDEA 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFT ED  E   HGG  V   IL+        RLA  GEFS+RAF NG+ID
Sbjct: 63  IVIYFKAPFSFTAEDVVEIQCHGGFIVAQSILKTTLL-HGARLATAGEFSKRAFFNGRID 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++A LI +++E   ++  + M G L     +  D L HI ++ E  +D++E ED+
Sbjct: 122 LSKAEAIAQLIEAKSEDAAKILAQQMKGSLKEYVEKIRDDLIHILAYSEVSIDYAE-EDL 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                 ++   +  LK  ++  +   K  E +  G+K+ I+G  N GKSSL NAL   + 
Sbjct: 181 PEDLVMQIQAKLKELKTSLNKTLQASKAREGLMQGFKVAIIGKPNVGKSSLLNALLNYNR 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+DI GTTRD +   + +  +L++I DTAGIRE  D +E+ GI+R+   +  +D+++ 
Sbjct: 241 AIVSDIAGTTRDTIEEQVKIGTHLIRIVDTAGIREASDEIERIGIERSLEAINESDIVIA 300

Query: 305 LKEIN------SKKEISFPK----NIDFIFIGTKSDLYST-YTEEYDHLISSFTGEGLEE 353
           L + +       ++ +S  +    + + + +  K DL    Y    +  I   + EG+EE
Sbjct: 301 LFDASRVADYEDEQILSLIESKAGSKNVLHVKNKIDLEEKFYRSSLEFDIEINSKEGVEE 360

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           LI  +++I++         + S +R +  +  T+ Y++ A    ++  L+I + NL  A 
Sbjct: 361 LILALENIMNQANTSDEMMLIS-QRQIGAVQNTLNYIDEAFEPLQEQELEIFSFNLNEAI 419

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +  IT   + +++LD +F  FC+GK
Sbjct: 420 KEIASITRPFENDEMLDKMFGSFCLGK 446


>gi|319901508|ref|YP_004161236.1| tRNA modification GTPase trmE [Bacteroides helcogenes P 36-108]
 gi|319416539|gb|ADV43650.1| tRNA modification GTPase trmE [Bacteroides helcogenes P 36-108]
          Length = 461

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 144/466 (30%), Positives = 237/466 (50%), Gaps = 31/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-------KKKKPFPRKASLRYF 53
           MN  ++TI A++TG    AI  IR+SGP    +   I        + +K  P   +    
Sbjct: 1   MN--QDTICAIATGQG-GAIGCIRVSGPEAIGITSRIFIPAMAGKRLEKSKPYTLTFGCV 57

Query: 54  FGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
           +  D  I+D+ L+ +F +P S+TGE+S E   HG   ++  IL+ L K    R+A PGE+
Sbjct: 58  YN-DTEIVDEVLVSLFRAPHSYTGENSTEITCHGSNYILQKILQLLIK-NGCRMAKPGEY 115

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NGK+DL +AE++ADLI+S +    RL+M  M G  S       D+L    S IE
Sbjct: 116 TQRAFLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTSLRDQLLRFTSLIE 175

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
            +LDFS+ E+++     E+      ++  IS  +    +G  I+NG  + I+G +NAGKS
Sbjct: 176 LELDFSDHEELEFADRAELCRLADDIERVISQLVHSFSVGNAIKNGVPVAIIGETNAGKS 235

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           +L N L  ++ AIV+DI GTTRDV+   ++++G   +  DTAGIRET+D +E  GI+RTF
Sbjct: 236 TLLNVLLNEEKAIVSDIHGTTRDVIEDTVNIDGITFRFIDTAGIRETNDTIESLGIERTF 295

Query: 294 LEVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLY---------STY 335
            +++ A+++L + +           S++ +   +    I +  K+DL             
Sbjct: 296 QKLDQAEIVLWMIDATDASSQIVQLSEQILPRCEGKQLILVLNKADLVQDTSSIATTDFP 355

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                  IS+     ++EL   + +  +         I ++ RH   L+  +  ++    
Sbjct: 356 KNVKSIFISAKRRTNIDELQQILIAAANLPTVTQNDIIVTNIRHYEALTHALEAIQRVQQ 415

Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +   D +++++R     L  I G V  + +L  IF  FCIGK
Sbjct: 416 GLANNLSGDFVSQDIRECIFHLSDIAGEVTNDMVLQNIFQHFCIGK 461


>gi|317502978|ref|ZP_07961067.1| thiophene and furan oxidation protein ThdF [Prevotella salivae DSM
           15606]
 gi|315665914|gb|EFV05492.1| thiophene and furan oxidation protein ThdF [Prevotella salivae DSM
           15606]
          Length = 454

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 137/455 (30%), Positives = 232/455 (50%), Gaps = 20/455 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLD 57
           +  TI A++T     AI I+R+SG    ++ + I K  +                    +
Sbjct: 2   DNHTICALATATG-GAIGIVRVSGEKAIEITDCIFKSTRLKTLCDAKGNSLHYGEVHDKE 60

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ++D+ L+ +F SP S+TGEDS E   HG   ++  +++ L      R A PGEF++RA
Sbjct: 61  GNVIDEVLVSIFRSPHSYTGEDSTEISCHGSAFILGQVIKALI-DSGCRQAEPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           + NGK+DL +AE++ADLI+S  +   +L++  + G  SS   Q  ++L  I S +E +LD
Sbjct: 120 YLNGKMDLSQAEAVADLIASSNKASHQLALNQLKGHFSSELSQLREQLLKITSLLELELD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FS+ E+++     E+      +++ IS  I   + G  ++ G  + I+G +N GKS+L N
Sbjct: 180 FSDHEELEFADRGELEALAEKIQHRISDLILSFETGNALKKGIPVAIVGKTNVGKSTLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV++I GTTRD++    ++ G   +  DTAGIR+T+D VE+ GI++ F +++
Sbjct: 240 CLLHEDKAIVSNIHGTTRDIIEDTTEINGITFRFIDTAGIRKTEDYVEQLGIEKAFKKID 299

Query: 298 NADLILLLKE-INSKKEI----SFPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFT 347
            A ++L   + I +  +I       +    + +  K D  S      +       IS+  
Sbjct: 300 EASIVLWTIDQIPTADDINEMQRLTEGKKLLIVFNKMDCLSQQQVDNHLPFRVIYISAKY 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIA 406
            E + EL   I         +    I ++ RH   L++    ++      +     D+I+
Sbjct: 360 KEHINELETAIYESADIPTIRENSVIVTNARHYEALARAKESIQRVIDGIQLGLSGDLIS 419

Query: 407 ENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           E+LRL    LG+IT G +   ++L  IF  FCIGK
Sbjct: 420 EDLRLCLEQLGEITGGQITTNEVLGNIFKHFCIGK 454


>gi|325291447|ref|YP_004267628.1| tRNA modification GTPase trmE [Syntrophobotulus glycolicus DSM
           8271]
 gi|324966848|gb|ADY57627.1| tRNA modification GTPase trmE [Syntrophobotulus glycolicus DSM
           8271]
          Length = 466

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/466 (32%), Positives = 248/466 (53%), Gaps = 32/466 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK----ASLRYFFGLDGRI 60
           ++TI A++T      I I+RLSG    +V     +       +     +L   +  DG  
Sbjct: 3   EDTIVALATPPGEGGIHIVRLSGRGAGEVINHCFQPVNSARWQTQASHTLHLGWFFDGET 62

Query: 61  -LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ LL    SP S+TGED  E + HGG+  V  I+E        RLA PGEFS+RAF 
Sbjct: 63  KIDQVLLSRMLSPFSYTGEDVFEINCHGGMIPVRRIIEACL-HQGARLAGPGEFSKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL++AE++ DLISS++E+   L++  + G LS        ++  I SFIEA +DFS
Sbjct: 122 NGKMDLVQAEAIIDLISSKSELSADLAVAQLDGALSDKVQVLRQEILDILSFIEAAIDFS 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+E +   +  ++   I  +++   + ++  K G+IIR G   VI G  N GKSSL NAL
Sbjct: 182 EDE-IDLLTYSQLEERIKSVRSKTIAILNGSKTGKIIREGLSTVIAGIPNVGKSSLLNAL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            +++ AIVTDIPGTTRD +   + + G L+ + DTAGIR+++D VE  GI R++  ++ A
Sbjct: 241 LREERAIVTDIPGTTRDEIREYVKIGGVLLHLIDTAGIRKSNDPVEMIGINRSWKAIDEA 300

Query: 300 DLILLLKEINSKK----------EISFPKNI--DFIFIGTKSDLYSTY------------ 335
           D++LLL ++  K+          E+   K+     I +  K DL S+Y            
Sbjct: 301 DVVLLLLDVTDKENHSDGCLTEDELRILKDYAEKTIILYNKIDLLSSYHKADFLIPAQVK 360

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
            +    L S+    G +EL  +++  +      +   + S+ R +  +   + +L+ A  
Sbjct: 361 NQIKTILFSAKKRIGFKELEAELEKRVFGGDSAVMKPMLSNLRQISEMKNCLNHLDAALN 420

Query: 396 NEK-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   +  +D+++ ++R +   + +ITG    E LL  IF++FCIGK
Sbjct: 421 SLALNIPIDLLSIDIRASLECISRITGNNVQEDLLTNIFTRFCIGK 466


>gi|321474525|gb|EFX85490.1| hypothetical protein DAPPUDRAFT_300302 [Daphnia pulex]
          Length = 496

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 172/468 (36%), Positives = 259/468 (55%), Gaps = 29/468 (6%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP--FPRKASLRYFFGLDGR 59
              + TIFA+S+G   SAI++IR+SGP    V   + ++KK    PRKA L         
Sbjct: 29  TTHRSTIFALSSGLSKSAIAVIRISGPKSLDVIHRMTRRKKDSVIPRKALLCRIVDPKNE 88

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            +LD GL++ FP P SFTGEDS E HVHGG+AVV+ ++  L K+P  RLA  GEF++RA+
Sbjct: 89  EMLDNGLVLWFPQPHSFTGEDSVELHVHGGVAVVSSVINALHKLPGFRLAEAGEFTKRAY 148

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
             GK+D  E E LADL+ +ETE QRR ++   +GEL+ LY  W  ++    + +EA +DF
Sbjct: 149 LAGKLDATEVEGLADLLRAETETQRRQAIRQATGELAGLYNLWRTRVLTCMAHLEAFIDF 208

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E++D+       + + +  LK ++ SH++  + GE +R+G K+ I+G  NAGKSSL N 
Sbjct: 209 GEDQDIGEEVLGTLRDSVQSLKAEVDSHLNDNRRGERLRSGVKVAIIGEPNAGKSSLINI 268

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++VAIV+   GTTRDVL I LD+ G+ V I DTAG+R + D VE EG++R       
Sbjct: 269 LGRRNVAIVSPHAGTTRDVLEISLDIGGFPVVICDTAGLRHSVDPVENEGLRRAREAAAT 328

Query: 299 ADLILLLKEINSKKE-------------------ISFPKNIDFIFIGTKSDLYSTYTEEY 339
           ADL++++ + +   E                   +SF    +++ +  K DL S      
Sbjct: 329 ADLVIIVMDASRGPESLWQQPVKDLIRHECQRLNLSFSAENNYLVLLNKLDLVSPNVNRP 388

Query: 340 DH--LISSFTGEGLEELINKIKSILSNKFKK--LPFSIPSHKRHLYHLSQTVRYLEMAS- 394
                IS  T +GL E +  ++  L+           + +  R  +H+     +LE    
Sbjct: 389 PELSAISCKTEKGLGEFLVHLEGKLAELCANPLQESPLITSSRQRHHVQLAFWHLEKFLD 448

Query: 395 LNEKDCGLDIIAENLRLASVSLGKIT--GCVDVEQLLDIIFSKFCIGK 440
           + E    L +  E LR ++  LG IT  G +D E++LD++F  FCIGK
Sbjct: 449 IVEHQGDLALAGEYLRRSANQLGSITARGKIDTEEMLDVLFRSFCIGK 496


>gi|331089219|ref|ZP_08338121.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330405771|gb|EGG85300.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 465

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 154/465 (33%), Positives = 234/465 (50%), Gaps = 31/465 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-------- 56
           KETI A+STG   S I I+R+SG     V + I + KK      S    +G         
Sbjct: 3   KETIAAISTGMTNSGIGIVRISGEEAVLVADRIYRGKKKLCEVKSHTINYGYIVDREISS 62

Query: 57  ----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
                  ++D+ L+ V  +P +FTGED+ E + HGG  VV  +LE L        A PGE
Sbjct: 63  AEKKSEEVIDEVLVTVMKAPGTFTGEDTVEINCHGGTFVVKKVLE-LVLKNGASPAEPGE 121

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NGK+DL +AE++ D+I+SE E   + S+  + G +        +K+ +  +FI
Sbjct: 122 FTKRAFLNGKMDLSQAEAVIDVINSENEYALQSSVSQLKGSVKKKINDIREKIIYHTAFI 181

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E  LD  E   V  +S   + +    +  ++   I     G +I+ G K VI+G  NAGK
Sbjct: 182 ETALDDPEHISVDGYS-DTLRSSAEEIIQELERLIHSADDGRVIKEGIKTVIVGKPNAGK 240

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N LA  + AIVTDI GTTRDVL   + L    + + DTAGIR+T+D++EK G+ + 
Sbjct: 241 SSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGVLNLNVVDTAGIRQTEDLIEKIGVDKA 300

Query: 293 FLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY------- 339
               E ADLI+ + +       N +K I+   +   I +  KSD+ +  + E+       
Sbjct: 301 LEYAETADLIIYVVDASRSLDENDEKIINMISDKKSIVLLNKSDIDTVISAEHIKEKVSN 360

Query: 340 --DHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-L 395
                IS+    G+++L +K+K + L            S+ R    L + +  ++     
Sbjct: 361 IPIISISAKEERGIKDLEDKVKEMFLKGDISFNDQVYISNVRQKNALLEALESMKKVIRS 420

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + +   D  + +L  A  SLG ITG    E L++ IFSKFC+GK
Sbjct: 421 IDDNMPEDFYSIDLMDAYESLGYITGNSVGEDLINEIFSKFCMGK 465


>gi|29840683|ref|NP_829789.1| tRNA modification GTPase TrmE [Chlamydophila caviae GPIC]
 gi|33301705|sp|Q821L2|MNME_CHLCV RecName: Full=tRNA modification GTPase mnmE
 gi|29835033|gb|AAP05667.1| thiophene and furan oxidation (thdF) [Chlamydophila caviae GPIC]
          Length = 443

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/447 (35%), Positives = 228/447 (51%), Gaps = 16/447 (3%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FPRKASLRYFFGLDGRILD 62
           + +TI A++T     +I+I+R+SGP   Q+ + I     P F    +         R +D
Sbjct: 3   KNDTIAAIATPPGEGSIAIVRISGPEAIQITDKIFSGSVPSFASHTAHLGIVNHKDRQID 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LL++  +P SFTGED  E   HGG    + ILE L      R A PGEFS+RAF NGK
Sbjct: 63  QVLLLIMRAPRSFTGEDVIELQCHGGYFSCSQILEALV-SEGARPALPGEFSQRAFLNGK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AE++ ++I+++      ++     G  S         +    +FIE   DF EEE
Sbjct: 122 IDLIQAEAIQNIIAADNLDAFFIAQNHFQGHFSKKIQLISSLIVESLAFIEVLADFPEEE 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                  K+ LN+ + +  D+   IS    G+ +  G  IV+ GH N GKSSL NAL  K
Sbjct: 182 QPDMDVPKQRLNEAMLIIEDL---ISSFDEGQRLAQGTSIVLAGHPNVGKSSLLNALTNK 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDIPGTTRD+L  +  L+G  +++ D+AG RETD++VE+EGI+R    +E ++ I
Sbjct: 239 NRAIVTDIPGTTRDILEENWTLQGKRIRLIDSAGQRETDNLVEQEGIERAISAMEQSEGI 298

Query: 303 LLLKEINSK----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI---SSFTGEGLEELI 355
           L + +         EI F K    + +  KSDL S    +        S+ TGEG+ EL 
Sbjct: 299 LWVMDATQPPPSLPEILFQK--PSLLLWNKSDLASPPQLDTSLPQLAISAKTGEGIFELK 356

Query: 356 NKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLAS 413
             I+  +   +  K         RH   L Q   YL  A          ++IA  LR A 
Sbjct: 357 QFIQKWMQQQQLGKNAKVFLVSSRHHTILQQMRSYLLSAKEGLLAQLPPELIALELRQAL 416

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + G ++G    E +L  IFS+FCIGK
Sbjct: 417 QATGNLSGSEVNETILGEIFSRFCIGK 443


>gi|291521111|emb|CBK79404.1| tRNA modification GTPase trmE [Coprococcus catus GD/7]
          Length = 458

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 139/459 (30%), Positives = 226/459 (49%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-----KASLRYFFGLDG 58
           + +TI A+STG   + I  +RLSG     + + I +      R       ++ Y +  DG
Sbjct: 2   QSDTIAAISTGMTNAGIGKVRLSGDDAVTIVDRIYRSPGGRKRLSDVSTHTIHYGYIYDG 61

Query: 59  R-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ ++++   P S+T ED  E   HGG+ V+  +LE + K    RLA PGEF++RA
Sbjct: 62  DCLIDEVMVLIMRGPNSYTREDVVEIDCHGGVVVMKKLLETVLK-YGARLAEPGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+++++M    S+  + G +     +    +    +FIEA LD
Sbjct: 121 FLNGRIDLSQAEAVIDVINAKSDMALESSLNQLRGSVKKSIEKLRKGIIGNIAFIEAALD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             E    + F  +  +  +     ++   +     G +++ G K VILG  NAGKSSL N
Sbjct: 181 DPEHIQAEGFGDELAVQ-VRGYMAELQKMLDSADNGRLVKEGIKTVILGKPNAGKSSLMN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ AIVT+I GTTRD L   + + G  + I DTAGIR+T+D+VEK G+++     E
Sbjct: 240 VLLGENRAIVTEIAGTTRDTLEEHVSIHGIPLNIIDTAGIRQTEDVVEKIGVRKAIDFAE 299

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYT--------EEYDHLI 343
            ADLI+ + +       N    I   ++   I +  KSDL    +        +     I
Sbjct: 300 EADLIIYVVDSSTEMDQNDDDIIRMIQSKKVIVLMNKSDLRPVVSRSDIEKQLQAPIIEI 359

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S+    GL+   + +K +              ++ RH   ++  +  L+M     E    
Sbjct: 360 SAREETGLDIFEDTLKDMFFAGDIHYNDELCITNVRHKAAIAAALESLKMVMHSIEDGMP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  + +L  A   LG I G    + L+D IFS FC+GK
Sbjct: 420 EDFFSIDLMDAYEQLGHIIGEAVEDDLVDTIFSDFCMGK 458


>gi|325199077|gb|ADY94533.1| tRNA modification GTPase TrmE [Neisseria meningitidis G2136]
          Length = 427

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/431 (37%), Positives = 241/431 (55%), Gaps = 18/431 (4%)

Query: 23  IRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAE 82
           IR+SG +   + E +C  K P PR A+   F   DG+ +D GLL+ F +P SFTGED  E
Sbjct: 2   IRISGKNLLPMAEALCG-KTPKPRVATYADFTDADGQAIDSGLLLFFAAPASFTGEDVIE 60

Query: 83  FHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ 142
              HGG  V++ +L    ++   RLA PGEF++RAF N K+DL +AE +ADLI + +   
Sbjct: 61  LQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLNDKLDLAQAEGVADLIDASSRSA 119

Query: 143 RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND 202
            RL++  + G+ S      ++ L  +R  +EA LDF E ED+    + +    +  L+  
Sbjct: 120 ARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE-EDIDFLEAADARGKLDGLRRA 178

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           +   ++  + G I+R G  +V++G  N GKSSL NALA  +VAIVTDI GTTRD +   +
Sbjct: 179 VDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGTTRDAVRERI 238

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEI---S 315
            ++G  V I DTAG+RETDD+VE+ GI+R+   V  AD+ L+L +    +N K      +
Sbjct: 239 LIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGVNDKTRAILDA 298

Query: 316 FPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
            P  +  I I +KSDL++          E    +S+ TG+GL+ L   +      +  + 
Sbjct: 299 LPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKTGDGLDALKRTLLREAGWQ-GEG 357

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLL 429
                +  RH+  L      L +A+L      +++ AE+LRLA V+ G+ITG    + LL
Sbjct: 358 EGLFLARTRHVNALKAAQEELSLAALCGNHQ-IELFAEHLRLAQVACGEITGEFTADDLL 416

Query: 430 DIIFSKFCIGK 440
            +IFS+FCIGK
Sbjct: 417 GVIFSRFCIGK 427


>gi|159902748|ref|YP_001550092.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9211]
 gi|159887924|gb|ABX08138.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus str. MIT 9211]
          Length = 455

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 152/454 (33%), Positives = 256/454 (56%), Gaps = 20/454 (4%)

Query: 3   HEKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
             +ETI A+++        +++IR+SG S  + C+ I          +S R  +G     
Sbjct: 6   STEETIAAIASAVSPGQGGVAVIRISGRSAQETCKQIVH-IPGDQIWSSHRIVYGHVIEK 64

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
              + +D+ L+++  +P SFTGED  E H HGG+  V  IL ++ + P++R A PGEFS+
Sbjct: 65  KTQKHIDEVLILIMEAPRSFTGEDVVEIHCHGGLISVQRILNQILEQPDVRRALPGEFSQ 124

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RA  NG++DL++AE++ DLIS++++    L+M G+ G+++       DKL    S IEA 
Sbjct: 125 RAVLNGRLDLIQAEAINDLISAKSQKAAELAMAGVDGDITQRINSLRDKLLDQLSEIEAR 184

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF +  D+   + + +L D++ + N++   +   K G I RNG KI ++G  N GKSS+
Sbjct: 185 IDFED--DLPPLNKQALLADLIKINNELQQLVIDAKQGCIFRNGLKIALIGLPNVGKSSV 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L+K++ AIVT +PGTTRD+L  ++ LEG  + + DTAGIR T+D VEK G+ ++   
Sbjct: 243 LNRLSKRERAIVTALPGTTRDLLESEIILEGIPITLLDTAGIRSTNDEVEKIGVAKSKNA 302

Query: 296 VENADLILLLKEIN-----SKKEI--SFPKNIDFIFIGTKSDL-YSTYTEEYDHLISSFT 347
           +  AD++L + +++     + +++    PK +  + IG K+D+     T + + + S+ T
Sbjct: 303 LMTADIVLFIFDMSIGWTTADQDLFDQIPKQMPTLLIGNKADIKVQQDTNQAEIIFSALT 362

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIA 406
           G+G   LI  +  I     +     I  ++R L  ++   + L +   +  ++   D   
Sbjct: 363 GQGENNLIQALLKI-CGLHETHGIEIALNERQLDLVNAASKALGKTLEVTTQELPWDFWT 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LR A   LG++TG    E LLD IFS+FCIGK
Sbjct: 422 IDLRDAIQKLGELTGHEISEALLDRIFSRFCIGK 455


>gi|148285155|ref|YP_001249245.1| tRNA modification GTPase TrmE [Orientia tsutsugamushi str. Boryong]
 gi|205415786|sp|A5CFM7|MNME_ORITB RecName: Full=tRNA modification GTPase mnmE
 gi|146740594|emb|CAM81244.1| tRNA modification GTPase TrmE [Orientia tsutsugamushi str. Boryong]
          Length = 447

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/453 (35%), Positives = 251/453 (55%), Gaps = 19/453 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGR 59
           M  +  TIFA S+    + +++ R+SG     + E +C K    PRK   R        +
Sbjct: 1   MTSK--TIFAQSSAKGKAGVAVFRISGSLSLLIVERLCGKFNIVPRKVYYRTIRCYATSQ 58

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++DK L++ F   +SFTGED  E H HG +AV   +   + +   +RLA PGEF++RAF 
Sbjct: 59  VIDKALIVYFKGEQSFTGEDVVEIHTHGSVAVAKMLTRSILECDGIRLAEPGEFAKRAFL 118

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL  AE L DLI SET MQ + ++  M GEL  LY  W   L  I SFIE  +DF 
Sbjct: 119 NGKMDLTMAEGLVDLIESETLMQHKQAIRQMEGELEKLYSHWRGMLIKILSFIEGYIDFP 178

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + E++     +E  + I  L  +IS+H+   + GE++R+G  + I G +N GKSSL N L
Sbjct: 179 D-EEIPQSVLREAKSIINNLTREISNHLGDTRKGEVLRHGIVLAITGETNTGKSSLLNYL 237

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+DIPGTTRDV+   LD+ GY + + DTAGIRE+DD +E+EGIKR+ +  +N+
Sbjct: 238 TMREAAIVSDIPGTTRDVIEAHLDIGGYPIIVRDTAGIRESDDPIEQEGIKRSLVAFKNS 297

Query: 300 DLILLLKEINSKKEIS-----FPKNIDFIFIGTKSDLYS-------TYTEEYDHLISSFT 347
           D+ +L+ +  +   ++        ++  I +  K DL +          ++    +S   
Sbjct: 298 DIRILMIDATNINSVNQTIAHLLNDVYTIIVINKIDLVNYKYDSSILPCDKPIVAVSLLK 357

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
             GL+ L+++I S              + +R+   L++ +  L++ +L   +  L + AE
Sbjct: 358 QVGLDRLMSEIVSYAEKIADPGNVPAITRERYRNSLNKALELLQLVNL---ENDLVLAAE 414

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LR+A   L  ITG + ++ +L  IF+ FCIGK
Sbjct: 415 DLRMAIRYLEHITGKIKIDDILAEIFASFCIGK 447


>gi|33239666|ref|NP_874608.1| tRNA modification GTPase TrmE [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|46577393|sp|Q7VE01|MNME_PROMA RecName: Full=tRNA modification GTPase mnmE
 gi|33237191|gb|AAP99260.1| Predicted GTPase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 455

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/453 (33%), Positives = 254/453 (56%), Gaps = 18/453 (3%)

Query: 3   HEKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLD 57
             +E I A+++       AI+I+++SG S  +V + + +    K     K    +     
Sbjct: 6   STEENIAAIASAVAPGQGAIAIVKVSGASAKEVVKNVVRTPSNKIWSSHKILYGHVIDKS 65

Query: 58  GRI-LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            +  +D+ L+++   P SFTGED  E H HGG+ VV  +L+ + K P  R A PGEFS+R
Sbjct: 66  TKKNIDEVLILIMDGPRSFTGEDVVEIHCHGGLIVVQQVLDAILKQPKTRRAFPGEFSQR 125

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           A  NG++D+ +AE++ DLI + ++   +L++ G+ G++++      +KL    S IEA +
Sbjct: 126 AVLNGRLDITQAEAINDLIHARSQKAAQLAIAGIDGDITNKINYLREKLLDQLSEIEARI 185

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF E  D+   +SK++L D++ ++ ++   I+  K G +IRNG K+ ++G  N GKSS+ 
Sbjct: 186 DFEE--DLPKLNSKKLLTDLMLIRAELKQLINDAKQGSLIRNGLKVALVGLPNVGKSSIL 243

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L+K + AIVTD+PGTTRD+L  ++ LEG  + + DTAGIRET++ +EK G+  +   +
Sbjct: 244 NLLSKHERAIVTDLPGTTRDLLESEIILEGVPITLIDTAGIRETNNEIEKIGVSLSQKTL 303

Query: 297 ENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-LISSFTG 348
             AD+++L+ ++       +       PK    + IG K+DL S  T    H  +++ TG
Sbjct: 304 FTADIVVLIFDLSKGWNKNDQNLLEKIPKGTPTLIIGNKADLKSQSTNIQPHATMTAITG 363

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAE 407
           EG +ELI ++   L+   +     +  ++R L  +   V  L+    +  +    D    
Sbjct: 364 EGEKELIQELLK-LAGANELEGIEVALNQRQLDLVKVAVNALDQIEKVAAESLAWDFWTI 422

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LR A   LG++TG    E LLD IFS+FCIGK
Sbjct: 423 DLREAIYKLGELTGEEVTEALLDRIFSRFCIGK 455


>gi|262166779|ref|ZP_06034516.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus
           VM223]
 gi|262026495|gb|EEY45163.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus
           VM223]
          Length = 406

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/407 (35%), Positives = 224/407 (55%), Gaps = 20/407 (4%)

Query: 52  YFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
            F   +G+ LD+G+ + FP+P SFTGED  E   HGG  V++ ++  +  +  +R A PG
Sbjct: 2   PFTDENGQQLDQGIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILHINGVRPARPG 61

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EFS RAF N K+DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R +
Sbjct: 62  EFSERAFLNDKMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIY 121

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           +EA +DF E E++   +  +V  D+  + +++++   +   G I+R G K+VI G  NAG
Sbjct: 122 VEAAIDFPE-EEIDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAG 180

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NAL+ K+ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R
Sbjct: 181 KSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIER 240

Query: 292 TFLEVENADLILLLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------ 334
            + E+  AD +L + +         +EI        P+NI    I  K+D          
Sbjct: 241 AWEEIRQADRVLFMVDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICH 300

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
             +     +S+ TG+G++ L   +K  +            + +RHL  L +   +L++  
Sbjct: 301 VNQPTLIRLSAKTGQGVDALRQHLKECM-GFAGNQEGGFMARRRHLDALERAAEHLDIGQ 359

Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              E     DI+AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 360 QQLEGYMAGDILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 406


>gi|309791157|ref|ZP_07685689.1| tRNA modification GTPase TrmE [Oscillochloris trichoides DG6]
 gi|308226719|gb|EFO80415.1| tRNA modification GTPase TrmE [Oscillochloris trichoides DG6]
          Length = 456

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/460 (31%), Positives = 221/460 (48%), Gaps = 28/460 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFF--GLDGRI 60
             +TI A++T      I ++RLSGP  + + + + +   P P R   LRY +     G  
Sbjct: 2   HDDTIAAIATPPGEGGIGVVRLSGPQAYTIAQAVFRPLHPGPLRPHRLRYGYVVDASGAP 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L     +P SFT ED  E   HGG   V   L  +      RLA PGEF+ RAF N
Sbjct: 62  IDEALCTYMRAPRSFTREDVVEISCHGGALPVQMTLARVL-AAGARLARPGEFTLRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE+  D+I ++T     L+   + G L+        +L    +++ A +DF E
Sbjct: 121 GRIDLTQAEATLDVIRAQTTAGLALAQAQLGGWLAQEVRDLRAQLLEPLAYLTALIDFPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +E       +E L  +      +   ++    G + R G +  ++G  N GKSSL NAL 
Sbjct: 181 DE----VPHQEYLPALQTSLEGVERLLAGAAQGIVYRQGARAALVGRPNVGKSSLLNALL 236

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +   AIVT IPGTTRD L    +L+G  V + DTAGIRE+ D VE+ G++R+   +  AD
Sbjct: 237 RVQRAIVTPIPGTTRDTLEETANLDGIPVVLIDTAGIRESHDPVEQLGVERSRQALAGAD 296

Query: 301 LILLLKEIN------SKKEISFPKNIDFIFIGTKS------DLYSTYTEEYDH-----LI 343
           L LL+ +         +       +   I I  K       DL +    E+ H       
Sbjct: 297 LALLVLDATVPPGPADRVIAELTYDKPTILIWNKQDVVHNPDLVAPSPFEHPHLLGVVAT 356

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
           ++ TG G++ L + I   L         +  + S  RH   L +   +L     +  +  
Sbjct: 357 TATTGAGIDTLSHSISRALLGGAPLGAGAAHLVSSPRHRDALQRAADHLRAVLASCAQGV 416

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D++A +L +A  +LG+ITG    E LLD IF++FCIGK
Sbjct: 417 TVDLVAGDLTVALNALGEITGEAVGEDLLDTIFTRFCIGK 456


>gi|332373472|gb|AEE61877.1| unknown [Dendroctonus ponderosae]
          Length = 501

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 178/482 (36%), Positives = 262/482 (54%), Gaps = 42/482 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYF-FGLDG 58
           +     TIFA+S+G     +++IR+SGP        +   K+ P PR   LR     +  
Sbjct: 20  LRQNSSTIFALSSGLGKCGVAVIRVSGPEAGTAISKLTTLKELPQPRTVVLRSIKHPISN 79

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++DKGL++  P P SFTGEDS+EFHVHGG+AV+NG+L+ LA MP  +LA PGEF+RRAF
Sbjct: 80  ELIDKGLILWLPGPRSFTGEDSSEFHVHGGVAVINGLLDALASMPKFKLAEPGEFTRRAF 139

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL E E LADL+ +ETE QR+ ++    G LS LY  W   L H  + +EA +DF
Sbjct: 140 SNGKLDLTEVEGLADLLQAETEAQRKQALLQADGSLSKLYENWRHVLKHSVANLEAHIDF 199

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E E +++     V+ +I  L  DI+ H+  G+ GEI+R G K VILG  N GKSSL N 
Sbjct: 200 EETETLEDGLVDNVVKNIEVLSADINKHMRDGRKGEILRRGVKAVILGEPNVGKSSLLNL 259

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVE 297
           L ++  +IVT I GTTRDV+ + L+++GY + +SDTAG+R+ + D++E EG+ R     +
Sbjct: 260 LCQRPASIVTPISGTTRDVIQVTLNIQGYPLVLSDTAGLRKDSQDVIELEGMSRAVDIYQ 319

Query: 298 NADLILLLKE-------------------------------INSKKEISFPKNIDFIFIG 326
            ADL++L+ +                               IN  K+       + + + 
Sbjct: 320 KADLVILVIDFQNYSNWCHRHAADFKTYILHYIKELGVSDLINDPKDGQTMFKKECVVVL 379

Query: 327 TKSDLYSTYTEEYDHLI----SSFTGEGLEELINKIKSILS--NKFKKLPFSIPSHKRHL 380
            K+DL S    +  H      S  T  G+ +L+  +   L              +  RH 
Sbjct: 380 NKTDLDSKAVCDKIHKNIVKLSCKTEAGISDLVTVLAQHLKILCGEPSQEHPSMNQVRHR 439

Query: 381 YHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
             L +  ++L+    +      D++  AE+LR A  SLGK+ G V  E++LD+IF +FCI
Sbjct: 440 EQLLKCQKHLQSFLEDASKNKPDLVIMAEHLRKALTSLGKLIGTVTSEEILDLIFREFCI 499

Query: 439 GK 440
           GK
Sbjct: 500 GK 501


>gi|254302386|ref|ZP_04969744.1| thiophene/furan oxidation protein ThdF [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148322578|gb|EDK87828.1| thiophene/furan oxidation protein ThdF [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 455

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 238/454 (52%), Gaps = 21/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLDGR-IL 61
           +TI A+ST      ISI+R+SG     + E I + K       +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTSRGEGGISIVRMSGQDSLNILEKIFRPKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +LE + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ E 
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPE- 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E + +   + +++++     +I   +S    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 182 EGIDDPVPENLVDNLKKASAEIKELVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++ G  + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGE 349
           IL + + + + +               I I  K D+            E    IS+ +  
Sbjct: 302 ILYVIDTSREIDEEDYRIYDIINTDKVIGILNKIDIKQDIDLSKFPKIEKWIEISALSKI 361

Query: 350 GLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIA 406
           G++ L N+I   + N+  +      + ++ RH   L +T    L +    +    +D++A
Sbjct: 362 GIDNLENEIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEALLNIIETIDMGLPMDLMA 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++ A  SL ++TG +  E LLD IFS FC+GK
Sbjct: 422 VDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455


>gi|332827207|gb|EGJ99981.1| tRNA modification GTPase mnmE [Dysgonomonas gadei ATCC BAA-286]
          Length = 463

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 155/464 (33%), Positives = 246/464 (53%), Gaps = 28/464 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGL-D 57
            E   I A+ST A    I+IIRLSG  C ++ EF+ K    KK    +  ++ + + + D
Sbjct: 2   QENNIIAAISTPAGVGGIAIIRLSGKGCIELTEFVFKPLGNKKLGEQKANTIHFGYIIKD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             +LD+ L+ VF +P SFTGED  E   HG + +   IL+ L       LA PGEF++RA
Sbjct: 62  STVLDEVLISVFKAPHSFTGEDVVEISCHGSVYIQQNILQLLI-SKGAALAQPGEFTQRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL +AES+ADLI+S +    RL+M  M G  S+   +   +L +  S IE +LD
Sbjct: 121 FLNGKMDLSQAESVADLIASSSAATHRLAMNQMRGGFSNKLIELRTELLNFASLIELELD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE EDV+  + + +      ++  I       +LG  ++NG  + I+G +NAGKS+L N
Sbjct: 181 FSE-EDVEFANRERLKETAYDIELHIRKLAESFELGNAVKNGIPVAIIGETNAGKSTLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ AIV+DI GTTRDV+   ++++G   ++ DTAGIR+T D +E  GI+RTF ++E
Sbjct: 240 LLLHEEKAIVSDIHGTTRDVIEDTINIQGLTFRLIDTAGIRDTTDEIESIGIERTFKKIE 299

Query: 298 NADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYD-------- 340
            A++IL + ++ +  E         +   KN   I +  K D+ S   ++          
Sbjct: 300 QANIILWITDVGTADEHIRDLAEKILPAIKNQKLILVFNKVDMISAERKDNKERLLKEEI 359

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
                IS+   +G  +L + +    +         I ++ RH   L   +  ++      
Sbjct: 360 PDRIFISAKYEQGTNDLESLLVKAANIPEIGEQDIIVTNMRHYAALENALTAIKRVGEGL 419

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E     D +++++R     LG+ITG +  +++L  IF KFCIGK
Sbjct: 420 ELHLSGDFLSQDIRECMHYLGEITGQISTDEILGNIFGKFCIGK 463


>gi|144899662|emb|CAM76526.1| thiophene and furan oxidation protein ThdF [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 435

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 158/438 (36%), Positives = 253/438 (57%), Gaps = 11/438 (2%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+++      +++ RLSGP+   +   +   K+P PR A+        G  +D GL 
Sbjct: 5   TIFALASAPGRGGVAVFRLSGPASADILHSLTG-KRPQPRLATRVRVR-HGGEDIDDGLA 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP+P SFTGE+  E H+HGG AV   + + L ++  LR A  GEFSRRAF N K+DL 
Sbjct: 63  LYFPAPHSFTGEEVVELHLHGGRAVAAALSQALLEL-GLRPAEAGEFSRRAFLNDKLDLT 121

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
            AE++ADL+ +ET  QRR +++ + G L++L   W   L    +  EA +DFS+E    +
Sbjct: 122 RAEAIADLVDAETAAQRRQALQQLDGGLAALVEGWRQDLIRALALTEAIIDFSDEGIGDD 181

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              ++VL  +  L  D+ +   +G+  E +R+G  I ILG  NAGKSSL N +A ++VAI
Sbjct: 182 LV-EDVLGQVRALMADMRAKAREGQRRERLRDGIHIAILGAPNAGKSSLMNRIAGREVAI 240

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           V+   GTTRDV+   LDL G+ V ++DTAG+RE  + +E EGI R     E+ADL +L+ 
Sbjct: 241 VSAKAGTTRDVIETHLDLHGWPVVLADTAGLREAAEDIEAEGIARALARAESADLKMLVF 300

Query: 307 EINSKKEISFPKNIDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           + +   E               +  K+D+ +    +   ++S+ TG GL+ L+ +++S +
Sbjct: 301 DASLLPERDAQTQAMIDEASIVVFNKADMANPVDSDAGIMVSARTGLGLDALLARLESEV 360

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
           +++F        +  RH   + + +  L      +    +++ AE+LR A+ ++G+ITG 
Sbjct: 361 ADRFAVSAEPALTRARHRAAVEECLAALARF---DPAKPVELAAEDLRQAAQAIGRITGR 417

Query: 423 VDVEQLLDIIFSKFCIGK 440
           VDVE+LLD++F++FCIGK
Sbjct: 418 VDVEELLDVVFAEFCIGK 435


>gi|302693689|ref|XP_003036523.1| hypothetical protein SCHCODRAFT_48069 [Schizophyllum commune H4-8]
 gi|300110220|gb|EFJ01621.1| hypothetical protein SCHCODRAFT_48069 [Schizophyllum commune H4-8]
          Length = 520

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 165/463 (35%), Positives = 250/463 (53%), Gaps = 27/463 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC------KKKKPFPRKASL-RYFFGL 56
           +++TI+A+ST      I++IR+SGP   Q    +       +   P P +A   R     
Sbjct: 59  QRKTIYALSTPPGRGGIAVIRISGPDALQAWAKLVVLQGRQQSSLPKPWRAYRCRVVHPS 118

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
               +D GL I F  P+SFT ED  E HVH G A+V+ +L  ++ +P  R A  GEF++R
Sbjct: 119 HKEPIDDGLAIYFRGPKSFTTEDVVELHVHSGRAIVSSLLSAISALPFCRPAEAGEFTKR 178

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF  G++DL +AE L DLI +ETE QRR+++    G   +LY    ++  H  + +EA +
Sbjct: 179 AFLGGRLDLTQAEGLKDLIDAETEGQRRIALNAARGSNRALYEDLRNRAIHCLAQVEALI 238

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF E +D++     +   +   L   +  H++ G+ GEI+R G ++ + G  NAGKSSL 
Sbjct: 239 DFGEGDDIEEGVLDQARTEARELLASLHRHLADGRRGEIVRAGVRLALFGPPNAGKSSLL 298

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N LA+++ AIVT +PGTTRD+L + LDL G  +++SDTAG+R T D VE  GI+R    +
Sbjct: 299 NCLAQREAAIVTPVPGTTRDILELGLDLGGLPIRVSDTAGLRATQDEVEAIGIERAKRAI 358

Query: 297 ENADL---ILLLKEINSKKEISFPK------NIDFIFIGTKSDLY------STYTEEYDH 341
           E AD+   IL L +      I  P+        +  F+  KSDL       +  T     
Sbjct: 359 EGADVALCILSLPDCVRDGGIQVPEYVKTMITPETYFLFNKSDLATPEQLRAAATVPRSW 418

Query: 342 LISSFTGEGLEELIN----KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
           + S  T EG    I+    +++S            + +H RH  HL    R+++ A L  
Sbjct: 419 VTSLITKEGTSSFIDGFTTELQSRYHLDGVSEDPPLITHARHRVHLESAARFVQ-AFLES 477

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D  + + AE LR A+ ++GKI+G +DVE +LD +F+ FCIGK
Sbjct: 478 SDEDVIMGAEELRYAAQAIGKISGHIDVEDILDSVFNDFCIGK 520


>gi|90194102|gb|ABD92612.1| ThdF [Actinobacillus capsulatus]
          Length = 436

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 148/439 (33%), Positives = 240/439 (54%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRISGPLAQEVAKEVLGKEL-KPRLANYLPFKDQDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   ++    + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 EGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL+ +   + 
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQT 298

Query: 313 EISF-----------PKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFTGEGLEELI 355
             +F           P+NI    I  K DL   S   +E D      +S+ T  G++ L 
Sbjct: 299 AEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGESEGLQELDGFTLIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K+ +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKNSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|90194088|gb|ABD92605.1| ThdF [Actinobacillus porcitonsillarum]
          Length = 436

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 143/439 (32%), Positives = 240/439 (54%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRVSGPLASEVAKAVVGKEL-KPRLANYLPFMDTDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ + ++  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDLLLKRILEVKGVRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   +++   + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 EAKLNDIITQLANVRKEAKQGSILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL+ + + ++
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQ 298

Query: 313 E-----------ISFPKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFTGEGLEELI 355
                          P+NI    I  K DL   S   E+ D      +S+ T  G++ L 
Sbjct: 299 ADVFKTEWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTLIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKQSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|254468542|ref|ZP_05081948.1| tRNA modification GTPase TrmE [beta proteobacterium KB13]
 gi|207087352|gb|EDZ64635.1| tRNA modification GTPase TrmE [beta proteobacterium KB13]
          Length = 453

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 155/437 (35%), Positives = 236/437 (54%), Gaps = 16/437 (3%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESF 75
               + +IR+SGP+ F +   I         +A    F+  +G++LDKGLLI F  P+SF
Sbjct: 21  GMGGVGVIRISGPAAFTIAHQITHLDSIDSHRAQFTSFYSNEGQLLDKGLLIGFKGPKSF 80

Query: 76  TGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLI 135
           TGED AEF +HGG A++  +LEE   M   R+A PGEF+ RAF N K+DL +AE++AD+I
Sbjct: 81  TGEDVAEFQLHGGPALLQSLLEEALSM-GARMAKPGEFTYRAFLNNKLDLTQAEAVADII 139

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++ T+     +   + G  S      + KL  IR +IEA LDF E E++      ++ + 
Sbjct: 140 NASTKSAVINAANSLKGNFSLQINNLLKKLIDIRMYIEACLDFPE-EEIDFIEKGQIKSK 198

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I  ++  I         G++I++G+++ ++G  N GKS+L N  ++++VAIVT++PGTTR
Sbjct: 199 IQSIQQAIIVLQETAAKGQMIQDGFQVCLVGKPNVGKSTLMNLFSQEEVAIVTNVPGTTR 258

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           D +   + L+G  +   DTAGIRET+DIVE+ GIK+T   +  + L+L+L E   + +  
Sbjct: 259 DPVRASIALKGVPLNFVDTAGIRETEDIVEQAGIKKTREIISRSALVLVLLESLDEADDY 318

Query: 316 FPKN-----IDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELINKIKSILS- 363
             +N      + I++  K DL       + Y  +    IS+  G GL+ L   I      
Sbjct: 319 LKQNILQDECNVIWLLNKIDLNNEPPHVTDYAGQPLVAISAKCGTGLDLLEEHILQSFGL 378

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
           N  +       S +RHL  L Q   +L  A         +++AE L LA   +  ITG  
Sbjct: 379 NHLEANEQLFSSRQRHLEALKQIDHHLNTALDQLNQ--PELVAEELTLAQKEMSGITGEF 436

Query: 424 DVEQLLDIIFSKFCIGK 440
             E LL  IFS+FCIGK
Sbjct: 437 STEDLLGEIFSRFCIGK 453


>gi|85057945|ref|YP_456861.1| tRNA modification GTPase TrmE [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|123518017|sp|Q2NIG1|MNME_AYWBP RecName: Full=tRNA modification GTPase mnmE
 gi|84790050|gb|ABC65782.1| tRNA modification GTPase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 460

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 149/459 (32%), Positives = 238/459 (51%), Gaps = 24/459 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLDGRIL 61
            +TI A+ST      +S+IR+SG +       I K K   K      +  +    D  IL
Sbjct: 3   FDTIAAISTPLGTGGVSVIRVSGNNSITEINKIFKGKNLIKAKTHTITHGFILNKDQTIL 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ VF +P SFTGE+  E + HGGI +   +LE +  +  +RLA PGEFS+RA+ NG
Sbjct: 63  DEVLISVFKTPNSFTGENVVEINAHGGILITQMVLERILSLD-IRLAFPGEFSQRAYLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL++AES+ DLI +  E   +++  G+    S L     D++ ++ + IE ++D+ E 
Sbjct: 122 KMDLIQAESIMDLIHATNENAIKIANSGLQKYTSQLVTSLRDQILNLIAQIEVNIDYPEY 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +D+   + +++  ++  L   + + +S       ++ G K +I+G  N GKSSL NA   
Sbjct: 182 DDIPQITQQKIALEVQSLIKQLENILSHSHKNRYLKEGIKTLIIGRPNVGKSSLLNAFLN 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIV+DI GTTRD +    +  G+ + + DTAGIR+TDD +EK GI RT   +  A+L
Sbjct: 242 ENKAIVSDISGTTRDFVEAYFNCRGFTLHLIDTAGIRKTDDPIEKIGILRTEKMLLQAEL 301

Query: 302 ILLLKEIN------SKKEISFPKNIDFIFIGTKSDLY------------STYTEEYDHLI 343
           ILL+ + +        + +   +N   I IG K DL             S  T +    +
Sbjct: 302 ILLVLDQSNYLQEEDIQLLQLTQNYPRIIIGNKVDLKSDKLISSLCDYSSQLTPQEIISV 361

Query: 344 SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVR-YLEMASLNEKDCG 401
           SS    G  EL   I K    N  K   F+  S+ RH+  +   +R + ++     +   
Sbjct: 362 SSLDKTGFFELQQTILKKFQLNDIKPKDFNYFSNARHINQIQIALRSFQDLQQALLQSMP 421

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI + +L  A  +LG+I G      L+  +FSKFC+GK
Sbjct: 422 IDIYSIDLTKAYQALGQIIGENQENSLIKELFSKFCLGK 460


>gi|113953182|ref|YP_731887.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9311]
 gi|123327545|sp|Q0I6N5|MNME_SYNS3 RecName: Full=tRNA modification GTPase mnmE
 gi|113880533|gb|ABI45491.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9311]
          Length = 463

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 143/455 (31%), Positives = 240/455 (52%), Gaps = 25/455 (5%)

Query: 8   IFAVSTG--ALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFGLDG-RIL 61
           I A++T        I++IRLSGPS  +    I     ++     +    +     G   L
Sbjct: 12  IAAIATAVAPGQGGIAVIRLSGPSAVRAVAAITVIPGQQVWESHRVLYGHVVAAGGVERL 71

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L++V  +P SFTGED  E H HGG+  V  +L  + + P +R A PGEFS+RA  NG
Sbjct: 72  DEVLVLVMLAPRSFTGEDVVEIHCHGGVIAVQQVLARVLEQPGVRRALPGEFSQRAVLNG 131

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL  AE++ DL+ + ++   +L+M G+ G +        ++L    S +EA +DF E 
Sbjct: 132 RLDLTRAEAIGDLVGARSQRAAQLAMAGLDGGIQKKMVVLRERLLDQLSELEARVDFEE- 190

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D+   + + +L ++  ++ ++ + ++ G+ G ++R+G ++ ++G  N GKSSL N L++
Sbjct: 191 -DLPPLNGEALLQELQAVRLELLTLVADGERGSVVRHGLRVALVGRPNVGKSSLLNLLSR 249

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTD+PGTTRD+L  ++ L+G  + + DTAGIR T + VEK GI R+   + +ADL
Sbjct: 250 RERAIVTDLPGTTRDLLESEIVLDGVPITLLDTAGIRATSNAVEKLGIARSRDALASADL 309

Query: 302 ILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLY--------STYTEEYDHLISSF 346
           +LLL ++       +       P+ +  + +G K+DL         +      D  +S+ 
Sbjct: 310 VLLLFDLAQGWSDDDQALFALIPEGVPCLRVGNKADLPLKAEPVAETVAASVADVRLSAV 369

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDII 405
           TG+G + L+  +         + P  +  ++R           L  +  +       D  
Sbjct: 370 TGDGEQALVQAVLER-CGALGEQPLLLALNQRQSDLAVTAAEALARSEQVAADGLPWDFW 428

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +LR A  SLG+ITG    E +LD IFS+FCIGK
Sbjct: 429 TIDLRQAIRSLGEITGEQLTESVLDRIFSRFCIGK 463


>gi|15618747|ref|NP_225033.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae CWL029]
 gi|15836371|ref|NP_300895.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae J138]
 gi|16752200|ref|NP_445568.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae AR39]
 gi|33242198|ref|NP_877139.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae TW-183]
 gi|14195307|sp|Q9Z768|MNME_CHLPN RecName: Full=tRNA modification GTPase mnmE
 gi|4377152|gb|AAD18976.1| Thiophene/Furan Oxidation Protein [Chlamydophila pneumoniae CWL029]
 gi|8163542|gb|AAF73725.1| thiophene and furan oxidation protein ThdF [Chlamydophila
           pneumoniae AR39]
 gi|8979212|dbj|BAA99046.1| thiophene/furan oxidation protein [Chlamydophila pneumoniae J138]
 gi|33236709|gb|AAP98796.1| thiophene/furan oxidation protein [Chlamydophila pneumoniae TW-183]
          Length = 442

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 152/445 (34%), Positives = 224/445 (50%), Gaps = 13/445 (2%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILD 62
           + +TI A++T     +I+++RLSGP    + + I           ++       +  ++D
Sbjct: 3   KHDTIAAIATPPGEGSIAVVRLSGPQAIVIADRIFSGSVASFASHTIHLGQVIFEETLID 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LL++  SP SFTGED  EF  HGG    + IL+ L  +   R A PGEFS+RAF NGK
Sbjct: 63  QALLLLMRSPRSFTGEDVVEFQCHGGFFACSQILDALIAL-GARPALPGEFSQRAFLNGK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AE++ +LI +E     R++     G  S    +    +    +F+E   DF EEE
Sbjct: 122 IDLVQAEAIQNLIVAENIDAFRIAQTHFQGNFSKKIQEIHTLIIEALAFLEVLADFPEEE 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                  +E + + L +   +   IS    G+ +  G  +++ G  N GKSSL NAL +K
Sbjct: 182 QPDLLVPQEKIQNALHI---VEDFISSFDEGQRLAQGTSLILAGKPNVGKSSLLNALLQK 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT IPGTTRD+L     L+G  +++ DTAG R TD+ +EKEGI+R    +E AD I
Sbjct: 239 NRAIVTHIPGTTRDILEEQWLLQGKRIRLLDTAGQRTTDNDIEKEGIERALSAMEEADGI 298

Query: 303 LLLKEINSKKEISFPK---NIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEGLEELIN 356
           L + +     E   PK         +  K+DL       T      IS+ TGEGL ++  
Sbjct: 299 LWVIDATQPLE-DLPKILFTKPSFLLWNKADLTPPPFLDTSLPQFAISAKTGEGLTQVKQ 357

Query: 357 KIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
            +   +   +  K         RH   L +  R L+ A  N      +IIA  LR A  S
Sbjct: 358 ALIQWMQKQEAGKTSKVFLVSSRHHMILQEVARCLKEAQQNLYLQPPEIIALELREALHS 417

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           +G ++G    E +L  IFSKFCIGK
Sbjct: 418 IGMLSGKEVTESILGEIFSKFCIGK 442


>gi|163745111|ref|ZP_02152471.1| tRNA modification GTPase TrmE [Oceanibulbus indolifex HEL-45]
 gi|161381929|gb|EDQ06338.1| tRNA modification GTPase TrmE [Oceanibulbus indolifex HEL-45]
          Length = 428

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 164/437 (37%), Positives = 257/437 (58%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA ++    + +++IR+SGP  F +   I   K+P  R + LR      G ++D+ L
Sbjct: 2   DTIFAQASAPGRAGVAVIRISGPQAFAIAHKI-SGKQPEGRTSVLRNLQNAAGEVIDQAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED  EF +HG IAVV  +L  L++ P+ R+A  GEF+RRA EN K+DL
Sbjct: 61  VLSFPGPNSFTGEDVIEFQLHGSIAVVRAMLATLSEFPDTRIAEAGEFTRRALENEKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ ++  +SG L +    W   L    + +EA +DF++ E+V 
Sbjct: 121 AQVEGLADLIEAETEAQRKQAVRVLSGHLGARVEDWRKDLIRAAALLEATIDFAD-EEVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV + +  +  ++ + I    + E +R+G+++ I+G  NAGKS+L NALA +D A
Sbjct: 180 IDVTPEVNDLLTKVGAELKAEIRGTHVAERVRSGFEVAIIGPPNAGKSTLLNALAGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +++ GTTRDV+ + +DL G  V + DTAG+R+++D +E  GI+R     + ADL + L
Sbjct: 240 ITSELAGTTRDVIEVRMDLGGLPVTLLDTAGLRDSEDQIEAIGIERAIERSKLADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                   +S P+  D + +  K+DL S    + ++ +S  TG+G+ +LI +I++ LS +
Sbjct: 300 AAPGESLMVS-PEAEDIVLVP-KADLVS----DSENGVSGKTGQGVSDLIARIQTTLSKR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
                  + +H+RH   L Q V  L    A L       D+ AE LR A  +L  + G +
Sbjct: 354 --SSGVGLATHERHRVALEQAVSCLAEVDAILTRGPDFYDLAAEELRFAIRALESLVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LLD IF+ FC+GK
Sbjct: 412 DVENLLDEIFTSFCVGK 428


>gi|90194134|gb|ABD92628.1| ThdF [Mannheimia granulomatis]
          Length = 436

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 147/439 (33%), Positives = 236/439 (53%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP    V E +  KK   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRVSGPLAETVAEAVLGKKL-QPRLANYLPFKDEDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +++ + ++  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDLLIKRILQVNGIRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
            + +  + N +     + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 ESKLNEIINQLDGVRREAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+R+T D VE+ GIKR + E+  AD +LL+ +   ++
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLRDTGDEVERIGIKRAWDEIAQADHVLLMIDSTEQQ 298

Query: 313 EISF-----------PKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELI 355
              F           PKNI    I  K DL                  S+ T  G++ L 
Sbjct: 299 ADQFRSEWADFLEKLPKNIPVTVIRNKVDLSGESEGLIQVDDFTMIRLSAQTKVGIDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
           + +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 DHLKKSMGYQ-SSTEGGFLARRRHLQALETAATHLERGHVQLTQFFAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|282901593|ref|ZP_06309512.1| tRNA modification GTPase TrmE [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193519|gb|EFA68497.1| tRNA modification GTPase TrmE [Cylindrospermopsis raciborskii
           CS-505]
          Length = 460

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 144/447 (32%), Positives = 233/447 (52%), Gaps = 27/447 (6%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFG-----LDGRILDKGLLI 67
               ++ I+R+SG     +   +     K+ +    S R  +G        +++D+ LL+
Sbjct: 20  PQQGSVGIVRVSGDQAMAIAHTLFYTPGKQIWE---SHRILYGFVRQPETKQVVDEALLL 76

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127
           +  +P SFT ED  EFH HGGI  V  +L+ L      RLA PGEF+ RAF NG++DL +
Sbjct: 77  IMKAPRSFTREDVVEFHCHGGIIPVQQVLQ-LCLENGARLAQPGEFTLRAFLNGRLDLTQ 135

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           AES+ADL+ +++    + ++ G+ G+L+       ++   I + IEA +DF E  D+   
Sbjct: 136 AESIADLVGAKSPQAAQTALAGLRGKLAQPIRSLRNQCLDILAEIEARIDFEE--DLPPL 193

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             + ++  I  +   I+  +S  + GE++R+G K+ I+G  N GKSSL NA ++ D AIV
Sbjct: 194 DQERIITQINQISVKIARLLSTKEKGELLRSGLKVAIVGRPNVGKSSLLNAWSQCDRAIV 253

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           TD+PGTTRD++   L + G  +++ DTAGIRET D VEK G++R+     +ADL+LL  +
Sbjct: 254 TDLPGTTRDIVESQLVVGGIPIQVLDTAGIRETVDQVEKLGVERSRQAANSADLVLLTID 313

Query: 308 INS------KKEISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGEGLEELI 355
             +      ++     K+   I +  K DL            E     ++    G+E+L 
Sbjct: 314 ATAGWQSGDEEIYQQVKHRPLILVINKIDLVEDLGGICSPNIEKAVKTAAAQNRGIEDLE 373

Query: 356 NKIKSILS-NKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDCGLDIIAENLRLAS 413
             I  ++   K       +  ++R    L +  +  +++         LD    +LR A 
Sbjct: 374 QAILEVVQTQKIVAGDLDLAINQRQAAALIKAQIDLVQVQKTIVDQLPLDFWTIDLRGAI 433

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LG+ITG    E LLD+IFS+FCIGK
Sbjct: 434 HALGEITGEEVTESLLDLIFSRFCIGK 460


>gi|300868767|ref|ZP_07113378.1| tRNA modification GTPase mnmE [Oscillatoria sp. PCC 6506]
 gi|300333328|emb|CBN58570.1| tRNA modification GTPase mnmE [Oscillatoria sp. PCC 6506]
          Length = 464

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 146/464 (31%), Positives = 234/464 (50%), Gaps = 27/464 (5%)

Query: 1   MNHEKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYF-F 54
           +    +TI A++T       ++ I+R+SG     +   +      +     +    Y   
Sbjct: 4   ILTTGQTIAAIATAIVPQQGSVGIVRVSGDEAIAIAHTLFHAPGNQIWESHRILYGYIRH 63

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA  GEF+
Sbjct: 64  PQSQQLVDEALLLIMKAPRSYTREDVVEFHCHGGIMAVQQVLQ-LCLESGARLAQAGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF NG++DL +AES+ADL+ + +    + ++ G+ G+L++   +       + + IEA
Sbjct: 123 LRAFLNGRLDLSQAESVADLVGARSPAAAQAALAGLQGKLATPIRELRATCLDVLAEIEA 182

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF E  D+       +   I  +  ++S  ++    GE++R+G K+ I+G  N GKSS
Sbjct: 183 RIDFEE--DLPPLDEGAIALQIQHILAELSRILATADSGELLRSGLKVAIVGRPNVGKSS 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NA ++ D AIVTD+PGTTRDV+   L + G  +++ DTAGIRET+D VEK G+ R+  
Sbjct: 241 LLNAWSRCDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETEDRVEKIGVARSRQ 300

Query: 295 EVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS---- 344
             E+ADL+LL  +         ++     K+   I I  K DL S    E          
Sbjct: 301 AAESADLVLLAIDAAAGWTEGDREIYQQVKHRPVILIVNKVDLVSEKDLEILQSKIENPQ 360

Query: 345 ------SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEM-ASLN 396
                 +   +G+E+L   I + ++    +     +  ++R    L++    LE  A   
Sbjct: 361 AKVLAAAAYNQGIEDLEQAILTAVNAGDLQAGNLDLAINQRQAAALTRAKISLEQCADTI 420

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 421 NNQLPLDFWTIDLRGAIQALGEITGEGVTESVLDRIFSRFCIGK 464


>gi|269302625|gb|ACZ32725.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae LPCoLN]
          Length = 442

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 152/445 (34%), Positives = 224/445 (50%), Gaps = 13/445 (2%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILD 62
           + +TI A++T     +I+++RLSGP    + + I           ++       +  ++D
Sbjct: 3   KHDTIAAIATPPGEGSIAVVRLSGPQAIVIADRIFSGSVASFASHTIHLGQVIFEETLID 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LL++  SP SFTGED  EF  HGG    + IL+ L  +   R A PGEFS+RAF NGK
Sbjct: 63  QALLLLMRSPRSFTGEDVVEFQCHGGFFACSQILDALIAL-GARPALPGEFSQRAFLNGK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AE++ +LI +E     R++     G  S    +    +    +F+E   DF EEE
Sbjct: 122 IDLVQAEAIQNLIVAENIDAFRIAQTHFQGNFSKKIQEIHTLIIEALAFLEVLADFPEEE 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                  +E + + L +   +   IS    G+ +  G  +++ G  N GKSSL NAL +K
Sbjct: 182 QPDLLVPQEKIQNALHI---VEDFISSFDEGQRLAQGTSLILAGKPNVGKSSLLNALLQK 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT IPGTTRD+L     L+G  +++ DTAG R TD+ +EKEGI+R    +E AD I
Sbjct: 239 NRAIVTHIPGTTRDILEEQWLLQGKRIRLLDTAGQRTTDNDIEKEGIERALSAMEEADGI 298

Query: 303 LLLKEINSKKEISFPK---NIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEGLEELIN 356
           L + +     E   PK         +  K+DL       T      IS+ TGEGL ++  
Sbjct: 299 LWVIDATQPLE-DLPKILFTKPSFLLWNKADLAPPPFLDTSLPQFAISAKTGEGLTQVKQ 357

Query: 357 KIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
            +   +   +  K         RH   L +  R L+ A  N      +IIA  LR A  S
Sbjct: 358 ALIQWMQKQEAGKTSKVFLVSSRHHMILQEVARCLKEAQQNLYLQPPEIIALELREALHS 417

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           +G ++G    E +L  IFSKFCIGK
Sbjct: 418 IGMLSGKEVTESILGEIFSKFCIGK 442


>gi|255690104|ref|ZP_05413779.1| tRNA modification GTPase TrmE [Bacteroides finegoldii DSM 17565]
 gi|260624386|gb|EEX47257.1| tRNA modification GTPase TrmE [Bacteroides finegoldii DSM 17565]
          Length = 466

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 155/470 (32%), Positives = 236/470 (50%), Gaps = 35/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-----RKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP    +   I K  KP       +  SL +   
Sbjct: 2   MN--QDTICAIATAQG-GAIGSIRVSGPEAISITSLIFKPAKPDKLFSDQKPYSLTFGRI 58

Query: 56  LDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            DG  I+D+ L+ +F +P S+TGEDS E   HG   ++  +L+ L K    R+A PGE++
Sbjct: 59  YDGDEIIDEVLVSLFRTPHSYTGEDSTEITCHGSSYILQQVLQLLIK-KGCRMAQPGEYT 117

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE 
Sbjct: 118 QRAFLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIEL 177

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFSE EDV+      +      ++  IS  +    +G  I++G  + I+G +NAGKS+
Sbjct: 178 ELDFSE-EDVEFADRSALKKLADEIEQVISRLVQSFNVGNAIKSGVPVAIIGETNAGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV+DI GTTRDV+   + + G   +  DTAGIRET+D +E  GI+RTF 
Sbjct: 237 LLNVLLNEDKAIVSDIHGTTRDVIEDTISIGGVTFRFIDTAGIRETNDKIESLGIERTFQ 296

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTY---------- 335
           ++E A+++L + +           SKK I   +    I +  K+DL              
Sbjct: 297 KLEQAEIVLWMVDSVNAASQIEQLSKKIIPRCEGKHLIVVFNKADLIEDVQKSNLSALLE 356

Query: 336 ---TEEYDHLISSFT-GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
               E  +H+  S    E   EL   + +            I ++ RH   LS+ +  + 
Sbjct: 357 NFPQESTEHIYISAKRRENTNELQKMLINAAHLPTVTQNDVIVTNVRHYEALSKALDAIH 416

Query: 392 MASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 +     D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 417 RVQNGLDSHLSGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 466


>gi|124269008|ref|YP_001023012.1| tRNA modification GTPase TrmE [Methylibium petroleiphilum PM1]
 gi|124261783|gb|ABM96777.1| putative thiophene and furan oxidation protein [Methylibium
           petroleiphilum PM1]
          Length = 480

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 150/472 (31%), Positives = 240/472 (50%), Gaps = 35/472 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     + E +C +    PR A    F    G  
Sbjct: 12  LPRHHDPIVAIATAPGRGAVGIVRVSGRGLGALIEAVCGRAL-QPRHAHYGPFLDAQGEA 70

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVV----NGILEE---------LAKMPNLRL 107
           +D+GL + FP+P S+TGE+  E   HGG  ++       LE          L ++  LR+
Sbjct: 71  IDQGLALHFPAPHSYTGEEVLELQAHGGPVLLQLLLARCLEAAAQPDARSGLPRLRGLRV 130

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEF+ RAF N K+DL +AE++ADLI + TE   R +   ++G  S       D+L  
Sbjct: 131 AEPGEFTERAFLNDKLDLAQAEAVADLIDASTEAAARSAGRALAGAFSQQVDTLRDRLIE 190

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA LDF E E++      +    +  +   + + +++ K G ++R G ++V+ G 
Sbjct: 191 LRMLVEATLDFPE-EEIDFLEKADARGRLARIAEALDAVLARAKQGALLREGLRVVLAGQ 249

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV--- 284
            N GKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R  DD     
Sbjct: 250 PNVGKSSLLNALAGAELAIVTPIAGTTRDKVAETIQIEGVPLHVVDTAGLRAEDDARDEV 309

Query: 285 EKEGIKRTFLEVENADLILLLKEIN---------SKKEIS--FPKNIDFIFIGTKSDLYS 333
           E+ G++R++  +  AD ++ L ++          ++++I    P  +  + +  K+D  +
Sbjct: 310 ERIGMQRSWGAIGEADAVIFLHDLTRAGDPGYDAAERDIEQRLPAGVHVLDVHNKADAAA 369

Query: 334 TYTEEYDHLI---SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                        S+ TGEGL+ L  ++  +   +         +  RHL  L  T  +L
Sbjct: 370 AGAAALAPQALRLSARTGEGLDTLRRRLLQLAGWQAGS-EGVFIARTRHLQALQATAEHL 428

Query: 391 EMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             A    +  D  LD++AE LRLA  +LG ITG    ++LL  IFS+FCIGK
Sbjct: 429 VRARQLADRADAALDLLAEELRLAHDALGAITGRYTPDELLGDIFSRFCIGK 480


>gi|90194132|gb|ABD92627.1| ThdF [Mannheimia ruminalis]
          Length = 436

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 141/439 (32%), Positives = 229/439 (52%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP    V + +  K  P PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRVSGPLAETVAQAVLGKTLP-PRIANYLPFKDEDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ + ++  LR+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDLLLKRILQVKGLRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S    + +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSHKINELVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   +     + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 EAKLNEIIAQLDGVRREAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL+ +   ++
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWEEIAQADHVLLMIDSTEQQ 298

Query: 313 E-----------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELI 355
                          P N+    I  K DL                  S+ T  G++ L 
Sbjct: 299 ADQFRQEWAEFLAKLPANMPVTVIRNKVDLSGEPEGLIQVDDFTMIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFLAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|110677827|ref|YP_680834.1| tRNA modification GTPase TrmE [Roseobacter denitrificans OCh 114]
 gi|123362327|sp|Q16CZ5|MNME_ROSDO RecName: Full=tRNA modification GTPase mnmE
 gi|109453943|gb|ABG30148.1| tRNA modification GTPase TrmE, putative [Roseobacter denitrificans
           OCh 114]
          Length = 428

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/437 (38%), Positives = 257/437 (58%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +T+FA+ +    + +S+IRLSGP+ + V E IC    P PRK+++R     DG ++D+ L
Sbjct: 2   DTVFALGSAQGRAGVSVIRLSGPAAWAVAETICGS-LPDPRKSAVRVLRAQDGSVIDQAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +P SFTGED  EFHVHG IAVV  +L+ L+     RLA  GEF+RRA ENGK+DL
Sbjct: 61  VLAFKAPHSFTGEDVVEFHVHGSIAVVRTVLDALSDQDVARLAEAGEFTRRALENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QRR ++  ++G L      W  KL    + IEA +DF++ EDV 
Sbjct: 121 SQVEGLADLIDAETEAQRRQAVRVLTGALGEKVEVWRSKLIRAAALIEATIDFAD-EDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV + +  + +D+ + ++   + E IR+G++I ++G  NAGKS+L N LA +D A
Sbjct: 180 VDVTPEVTSLLEDVSSDVRTEVAGTHVAERIRSGFEIALVGAPNAGKSTLLNKLAGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++I GTTRDV+ + +DL G  V   DTAG+R++ D +E  GI+R     + ADL + L
Sbjct: 240 ITSEIAGTTRDVIEVRMDLGGLPVTFLDTAGLRQSADEIETIGIERAIKRAQEADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
              + +  I   +  D I +  K DL            S  TG+G+ EL+ KI+S+ S +
Sbjct: 300 SGPDERLLIEPLE--DDIRLTPKVDLAPGSQTGI----SGKTGQGIPELLEKIRSVFSER 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCV 423
              +   + +H+RH   + + +  L+ +  +L       DI A+ LR A  +L  + G +
Sbjct: 354 VSAV--GLATHERHRLAMQRALEDLDNSFEALLRGPEFYDITAQELRSAIRALETLVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           D E LLD IFS FC+GK
Sbjct: 412 DAENLLDEIFSSFCLGK 428


>gi|260062619|ref|YP_003195699.1| tRNA modification GTPase TrmE [Robiginitalea biformata HTCC2501]
 gi|88784186|gb|EAR15356.1| tRNA modification GTPase [Robiginitalea biformata HTCC2501]
          Length = 462

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 152/463 (32%), Positives = 238/463 (51%), Gaps = 28/463 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK----ASLRYFFGLDG- 58
           +++TI A++T A   AI+++RLSGP    +     +       +     ++       G 
Sbjct: 2   DRDTIIALATPAGSGAIAVLRLSGPEAIPLAAEKFRAASGKALEDCPGHTVHLGTIRKGD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           RILD+ L  VF SP S+TGED  E   HG + +   IL  L      R+ANPGEF+ RAF
Sbjct: 62  RILDEVLATVFRSPRSYTGEDVVEISCHGSVYIQQEILN-LFLDSGCRMANPGEFTLRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+SE +   +++++ M G  SS   +  ++L H  S I  +LDF
Sbjct: 121 INGKMDLSQAEAVADLIASENKASHQIALQQMRGGYSSEIAKLREELLHFASMITLELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S  EDV+    +     +  L   +   I    LG +++ G  + I G  N GKS+L NA
Sbjct: 181 S-GEDVEFADREAFFGLLDRLSALLKGLIDSFALGNVLKKGIPVAIAGAPNVGKSTLLNA 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIV++I GTTRD +  ++ LEG   +  DTAGIRET+D VE  GI++TF ++E 
Sbjct: 240 LLREERAIVSEIAGTTRDAIEDEIVLEGIGFRFIDTAGIRETEDTVEHIGIRKTFEKMEA 299

Query: 299 ADLILLLKE---------INSKKEISFPK----NIDFIFIGTKSDLYSTYTEEY------ 339
           A +I+ + +          +   EI   +    +   I +  K+D       +       
Sbjct: 300 ARVIIYMVDGSRAHPDLLASWSAEIQSIRERHPDKPVILLVNKTDRLDDKARKQLEEALP 359

Query: 340 -DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
               IS+ TGEGLE+L   +  +++    +    + S+ RH   L +    +       E
Sbjct: 360 EALGISARTGEGLEQLQASLLGLVNRGVLENNDPVVSNSRHYQALVKAQEAIGNVREGME 419

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                D+++ ++  A   LG+ITG +  + LL  IFS FCIGK
Sbjct: 420 AGIPSDLVSVDINEALHHLGEITGQISTDDLLGNIFSNFCIGK 462


>gi|329943265|ref|ZP_08292039.1| tRNA modification GTPase TrmE [Chlamydophila psittaci Cal10]
 gi|332287844|ref|YP_004422745.1| tRNA modification GTPase [Chlamydophila psittaci 6BC]
 gi|313848416|emb|CBY17420.1| probable tRNA modification GTPase TrmE [Chlamydophila psittaci RD1]
 gi|325507350|gb|ADZ18988.1| tRNA modification GTPase [Chlamydophila psittaci 6BC]
 gi|328814812|gb|EGF84802.1| tRNA modification GTPase TrmE [Chlamydophila psittaci Cal10]
 gi|328915105|gb|AEB55938.1| tRNA modification GTPase TrmE [Chlamydophila psittaci 6BC]
          Length = 443

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 151/447 (33%), Positives = 227/447 (50%), Gaps = 16/447 (3%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILD 62
           + +TI A++T     +I+I+R+SGP   Q+ + I     P     +        +G+ +D
Sbjct: 3   KNDTIAAIATPPGEGSIAIVRVSGPEAIQITDKIFSGSVPSFSSHTAHLGTVSYNGQQID 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LL++  +P SFTGED  E   HGG    + IL  L      R A PGEFS+RAF NGK
Sbjct: 63  QTLLLIMRAPRSFTGEDVIELQCHGGYFSCSQILAALI-AEGARPALPGEFSQRAFLNGK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AE++ ++I++++     ++     G  S    Q    +    +FIE   DF E+E
Sbjct: 122 IDLIQAEAIQNIIAADSLDAFHIAQNHFQGHFSKKVQQISSLIIESLAFIEVLADFPEKE 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                     LN+ + +  D+   I+    G+ I  G  I++ GH NAGKSSL NAL  K
Sbjct: 182 QPDMEDPLHRLNEAILIIEDL---IASFDQGQKIAQGTSIILAGHPNAGKSSLLNALTNK 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDIPGTTRD+L     L+G  +++ D+AG RET++ +E+EGI+R    +E ++ I
Sbjct: 239 NRAIVTDIPGTTRDILEETWMLQGKRIRLIDSAGQRETNNPIEQEGIERALAAMEESEAI 298

Query: 303 LLLKEINSK----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI---SSFTGEGLEELI 355
           L + ++        EI   K    + +  KSDL +    E        S+ TGEG+ EL 
Sbjct: 299 LWVMDVTQPPPPLPEILMRK--PSLLLWNKSDLGTPPHIETTLPQLAVSAKTGEGIFELK 356

Query: 356 NKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLAS 413
             I+  +   +  K         RH   L Q   YL  A    +     + IA  LR A 
Sbjct: 357 QFIQKWMQKQQLGKNAKVFLVSSRHHTILQQMRTYLLSAQEGLQHQFPPEFIALELRQAL 416

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + G ++G    E +L  IFS+FCIGK
Sbjct: 417 QTTGNLSGSEINETILGEIFSRFCIGK 443


>gi|307172923|gb|EFN64090.1| tRNA modification GTPase GTPBP3, mitochondrial [Camponotus
           floridanus]
          Length = 510

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 171/466 (36%), Positives = 251/466 (53%), Gaps = 33/466 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKGL 65
           TI A+S+G     ++++RLSG    +  + +    K  PR A LR     +   ++D GL
Sbjct: 46  TICALSSGRGKCGVAVVRLSGSRSLEALKRMTNISKLVPRTAFLRKIRDPETEEVIDNGL 105

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP P SFTGEDS EFHVHGG A++  +++ L+K+  +  A PGEF+RRAF N K+DL
Sbjct: 106 CLWFPGPHSFTGEDSVEFHVHGGTAILTRLMQALSKLQ-VHPALPGEFTRRAFYNNKLDL 164

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E LADLI +ETE QR+ ++    G L  LY  W   L+   + IEA +DF EE++++
Sbjct: 165 TEVEGLADLIEAETECQRKQALLQADGVLHKLYDGWRKVLSESVASIEAYIDFGEEDNIE 224

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +   +   + +  L  D+  H++ G+ GEI+RNG + VI+G  N GKSSL N L +++ A
Sbjct: 225 SDVVQRAHDALRQLVRDLEEHLADGRRGEILRNGIRTVIVGEPNVGKSSLLNHLVQRNAA 284

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVENADLILL 304
           IVT + GTTRDV+ +  ++ GY V I+DTAGI   T DIVE EGI+R     ENAD +++
Sbjct: 285 IVTPVAGTTRDVIELSANISGYPVLIADTAGITNNTKDIVEVEGIRRARSYAENADFVIV 344

Query: 305 LKEI---------------------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY---- 339
           + +                         + ++      FI I  K DL     +      
Sbjct: 345 VMDAFKCVISEMTYEDYLRGYLSSLGIYELLTKMGKERFIVIMNKRDLLKAEDKRRLDDV 404

Query: 340 -DHLISSFTGEGLEELINKIKSILSNKFKK--LPFSIPSHKRHLYHLSQTVRYLEMASL- 395
              LIS  T +G E+L+  +    SN   +        S +RH  HL++ +R+L      
Sbjct: 405 EAVLISCKTEDGFEDLLQSLTDRFSNICGEPSAENPTISQERHRNHLTRCLRHLRNYFQL 464

Query: 396 -NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +   + I AE +  A   LG+ITG V   ++LDIIF  FCIGK
Sbjct: 465 CGNEQHDMAIAAEEIHKAMRELGRITGHVSTNEILDIIFKTFCIGK 510


>gi|328952573|ref|YP_004369907.1| tRNA modification GTPase mnmE [Desulfobacca acetoxidans DSM 11109]
 gi|328452897|gb|AEB08726.1| tRNA modification GTPase mnmE [Desulfobacca acetoxidans DSM 11109]
          Length = 456

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 147/455 (32%), Positives = 238/455 (52%), Gaps = 24/455 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FPRKASLRYFFG-----LDGRI 60
           TI A+ST      I I+RLSGP    + + I +  +P  P   + R   G      DG+ 
Sbjct: 5   TIAAISTPPGEGGIGIVRLSGPDSRAIADRIFRPARPHTPTWPARRLILGQIVSPEDGQA 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL   P P S+T ED  E   H G AV+  IL+ L      RLA+PGEF+ RAF +
Sbjct: 65  VDEVLLAFMPRPHSYTREDVIEIQCHSGYAVLQRILQ-LTLQAGARLADPGEFTLRAFLS 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ ++I + ++   R++   ++G L     +  D L  + + +EADLDF E
Sbjct: 124 GRLDLTQAEAVLEVIQARSDASLRVAAAHLAGGLGRHLTRLRDDLLDLLALVEADLDFGE 183

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             +V       +++ +  L+++I++       G ++R G ++V+ G  N GKSSL N L 
Sbjct: 184 --EVPEIDLAALVHQLEALESEITALCQSYAQGRMLRQGLQVVLAGRPNVGKSSLLNRLL 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + D AIVTDIPGTTRDV+  +L ++G  V + DTAG+R   ++VE+ GI+RT   ++ AD
Sbjct: 242 QTDRAIVTDIPGTTRDVIAENLVIQGLPVCLLDTAGLRPAQNLVEEIGIQRTQEHLQQAD 301

Query: 301 LILLLKE------INSKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHL---ISSF 346
           L+L L +      +  + ++   ++   + +  K DL      +     + H    IS+ 
Sbjct: 302 LVLYLLDASQPWQVEDEPQLQALRDQSILVVLNKIDLPRVLQPAAIPSAWPHHLIEISAL 361

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDII 405
           TGEG+  L   I          L   I +  RH  HL     +L+ A  + +     +++
Sbjct: 362 TGEGIPALKEAIFQAGMGGASPLDGQIVTQARHCRHLEHCRHHLQGAWKIIQTAQPRELL 421

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  LR A   L  I G    +++LD +F++FC+GK
Sbjct: 422 ALELRSALQELSAILGLEVDDEVLDRVFARFCLGK 456


>gi|225386360|ref|ZP_03756124.1| hypothetical protein CLOSTASPAR_00104 [Clostridium asparagiforme
           DSM 15981]
 gi|225047542|gb|EEG57788.1| hypothetical protein CLOSTASPAR_00104 [Clostridium asparagiforme
           DSM 15981]
          Length = 470

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 150/464 (32%), Positives = 237/464 (51%), Gaps = 31/464 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLDG- 58
           +TI A++TG   S I I+R+SG   F V + I + K   P      R  ++ Y F  DG 
Sbjct: 9   DTIAAIATGMSNSGIGIVRISGGEAFAVIDRIFRNKAGKPVKLSQERSHTVHYGFIYDGD 68

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+I+   P SFT ED+ E   HGG+ +V  ILE + +    R A PGEF++RAF
Sbjct: 69  ERVDEALVILMRGPRSFTAEDTVEIDCHGGVLMVKKILETVIR-YGARTAEPGEFTKRAF 127

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++AD+I+++ +   R S+  + G +S    +    + +  +FIE+ LD 
Sbjct: 128 LNGRIDLSQAEAVADVINAKNDYALRNSVGQLGGSVSKKIKELRAGILYQIAFIESALDD 187

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E   +  F+ + +  +I  +   +   I     G ++  G + VILG  NAGKSSL N 
Sbjct: 188 PEHISLDGFA-QSLRAEIEEMTEQVEKLIRSADDGRVMTEGVRTVILGKPNAGKSSLMNV 246

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIVT+I GTTRD L   + L+G  + + DTAGIR+T+D+VEK G+ R       
Sbjct: 247 LIGEDRAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDVVEKIGVDRAMKAARE 306

Query: 299 ADLILLLKEINSKKEISFPKNIDF------------IFIGTKSDL--------YSTYTEE 338
           ADL++ + + ++  + +  + +DF            I +  K+DL            T  
Sbjct: 307 ADLLIYVVDGSTPLDENDREIMDFIRSNSGEGGKKAIVLLNKTDLETCVDAGVLERETGC 366

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
               IS+   +G+E L  +IK +  +           +  RH   L +    LEM   + 
Sbjct: 367 VVIPISAKEEQGIEALEQEIKQMFYHGTLSFNDEVYITSVRHKEALGRARESLEMVKCSV 426

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+    D  + +L  A   LG I G    + +++ IF+KFC+GK
Sbjct: 427 EQGLPEDFYSIDLMDAYEQLGLIIGEAVDDDVVNEIFAKFCMGK 470


>gi|289826410|ref|ZP_06545522.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 426

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 143/425 (33%), Positives = 232/425 (54%), Gaps = 22/425 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D VE+ GI+R + E+E AD
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
            +L + +  +   +             PKN+    +  K+D+       S         +
Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           S+ TGEG++ L N +K  +      +     + +RHL  L++   +LE            
Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAANHLEQGKAQLLGAWAG 416

Query: 403 DIIAE 407
           +++AE
Sbjct: 417 ELLAE 421


>gi|119900277|ref|YP_935490.1| tRNA modification GTPase TrmE [Azoarcus sp. BH72]
 gi|205829056|sp|A1KCP8|MNME_AZOSB RecName: Full=tRNA modification GTPase mnmE
 gi|119672690|emb|CAL96604.1| probable tRNA modification GTPase [Azoarcus sp. BH72]
          Length = 452

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/447 (35%), Positives = 241/447 (53%), Gaps = 20/447 (4%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A++T      I ++R+SG       + +C ++ P PR A+L  F   DG  +D+G+L+
Sbjct: 12  IAAIATAPGRGGIGVVRVSGAGLTGFAQQLCGRE-PQPRLATLARFRDADGATIDEGILL 70

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127
            FP+P SFTGED  E   HGG  V+  +L     +   RLA PGEF+RRAF NGK+DL +
Sbjct: 71  YFPAPASFTGEDVLELQGHGGPVVMQMLLARCLAL-GARLAEPGEFTRRAFLNGKLDLAQ 129

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           AE++ADLI + T    R ++  +SG+ S    +  D L  +R  +EA +DF E E+V+  
Sbjct: 130 AEAVADLIEASTAAAARSALRSLSGQFSEEVLRIRDALIDLRMLVEATIDFPE-EEVEFL 188

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
                L  +  ++  + + + + + G ++R G  +V++G  N GKSSL N LA +D AIV
Sbjct: 189 DKGRALPRLAAIRTQLDALLDRARQGALLRTGMNVVLVGRPNVGKSSLLNQLAGEDRAIV 248

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           TD+ GTTRD L   + +EG  + + DTAG+R+T D+VE+ GI+RT+ EVE AD++L + +
Sbjct: 249 TDVAGTTRDALREAIQIEGIPLHVIDTAGLRQTSDVVERIGIERTWREVERADVVLRVID 308

Query: 308 INSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLEE 353
               +E +         P     I +  K DL     E  +        +S+ +G+G++ 
Sbjct: 309 SEGAEEDALEAELAARCPSAAARITVVNKIDLLGLAPERTETAGAVRLRLSARSGDGVDL 368

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  ++              + + +RHL  L + + +L  A        L   AE LRLA 
Sbjct: 369 LRTELLRAA-GWHAHGEDVVLARERHLLALREALDHLAAAEAAASALEL--FAEELRLAQ 425

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  ITG    + LL  IFS+FCIGK
Sbjct: 426 EALAGITGEFSADDLLGEIFSRFCIGK 452


>gi|90194098|gb|ABD92610.1| ThdF [Actinobacillus suis ATCC 33415]
          Length = 436

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 147/439 (33%), Positives = 239/439 (54%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRISGPLAQEVAKEVLGKEL-KPRLANYLPFKDQDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   ++    + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 EGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL+ +   + 
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQT 298

Query: 313 EISF-----------PKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFTGEGLEELI 355
             +F           P+NI    I  K DL   +   +E D      +S+ T  G++ L 
Sbjct: 299 AEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|13473776|ref|NP_105344.1| tRNA modification GTPase TrmE [Mesorhizobium loti MAFF303099]
 gi|81778888|sp|Q98DZ0|MNME_RHILO RecName: Full=tRNA modification GTPase mnmE
 gi|14024527|dbj|BAB51130.1| GTP-binding protein in thiophene and furan oxidation [Mesorhizobium
           loti MAFF303099]
          Length = 443

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 201/441 (45%), Positives = 279/441 (63%), Gaps = 8/441 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ++I A+S+G LP+ ++++R+SGP    V E I        R A LR F   DG +LD GL
Sbjct: 5   DSIVALSSGRLPAGVAVLRISGPQTRFVVETIAGGMVKD-RVAVLRRFKAPDGTVLDSGL 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I FP P SFTGED AEFHVHGG AVV  +LE ++    +R A PGEF+RRAF NGK+DL
Sbjct: 64  VIFFPGPASFTGEDVAEFHVHGGRAVVARMLEIISGFDGVRHAEPGEFTRRAFLNGKVDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +E E+LADL+++ETE QRR ++    G  S LY  W  +L H R+ IEA++DF++E+DV 
Sbjct: 124 VETEALADLVNAETEAQRRFAVRNAEGVQSELYLSWRRRLIHARAMIEAEIDFADEDDVP 183

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S  V +D+  +  +I  HI+     EIIR G+++VILG  NAGKSSLFNALA++D A
Sbjct: 184 GSVSDTVWSDVRAMIGEIDRHIAGFHAAEIIREGFEVVILGAPNAGKSSLFNALARRDAA 243

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTD PGTTRD+L + LDL G  V+++DTAG+RE    VE  GI++   + + ADL+LLL
Sbjct: 244 IVTDEPGTTRDLLEVTLDLGGLRVRLTDTAGLREAPGKVEAIGIEKARAKADRADLLLLL 303

Query: 306 KEINSKKEI-SFPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFTGEGLEELINKIK 359
           ++I +   +   P     + +GTK DL            YD  IS   G G+E L+ +I 
Sbjct: 304 EDILAPGVLGPLPGKAPLLRVGTKLDLLDEGSAREAAGRYDVAISVVGGTGVEALLAEIG 363

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
              ++    +   +PS  RH+  L +  R+L  A+  E   G ++ AE LRLA+ SLG+I
Sbjct: 364 RRAADAAGDVGDVLPSRLRHVELLGEANRHLLRAAA-EDAAGQELRAEELRLAADSLGRI 422

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
            G +DVE +LD+IFS+FCIGK
Sbjct: 423 VGAIDVEDMLDVIFSQFCIGK 443


>gi|254456774|ref|ZP_05070202.1| tRNA modification GTPase TrmE [Campylobacterales bacterium GD 1]
 gi|207085566|gb|EDZ62850.1| tRNA modification GTPase TrmE [Campylobacterales bacterium GD 1]
          Length = 446

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 141/448 (31%), Positives = 247/448 (55%), Gaps = 14/448 (3%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A++T     +I+IIR+SG    ++ + +  KK   PR A+L         ++D+
Sbjct: 2   DNDTISAIATANGIGSIAIIRISGDRALEIAKKLTHKKDFSPRYATLTTVHNKKNELIDE 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++I F +P SFT ED  E   HGG  V   IL+   ++   RLAN GEFS+RAF NG+I
Sbjct: 62  SIVIYFKAPYSFTAEDVVEIQCHGGFIVAQSILKATLEL-GARLANAGEFSKRAFFNGRI 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL EAE++A LI +++E   ++  + M G L        D++ HI +F E  +D++E ED
Sbjct: 121 DLSEAEAIAQLIEAKSEDAAKILAQQMKGSLKEYIEDIRDEIIHILAFSEVSIDYAE-ED 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +     K++ + +  LK+ + S +   +  E +  G+K+ I+G  N GKSSL N+L   +
Sbjct: 180 LPEDLVKQIESKLSDLKSSLESTLLASRAREGLMQGFKVAIVGKPNVGKSSLLNSLLNYN 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV++I GTTRD +   + +  +L++I DTAGIRE +D +E+ GI+R+   ++ +D+++
Sbjct: 240 RAIVSEIAGTTRDTIEEQVKIGTHLIRIVDTAGIREANDEIERIGIERSLEAIQESDIVV 299

Query: 304 LLKE----INSKKEISFP------KNIDFIFIGTKSDLYSTY-TEEYDHLISSFTGEGLE 352
            L +    ++++ E          KN   IF+  K DL + + TE+ +  +   + + + 
Sbjct: 300 ALFDGSRVLDAEDEQILALVDKHTKNKHVIFVKNKIDLENKFSTEDINFDLELNSKDSVT 359

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            LI  +K+I+          + S +R +  +  T+  +E +    +D  L+I + +L  A
Sbjct: 360 SLIESLKNIMDVNNNSDEIMLIS-QRQIMAVQNTLNNIEESFYPLQDQELEIFSFHLNEA 418

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +  IT   + +++LD +F  FC+GK
Sbjct: 419 VKEMASITRPFENDEMLDKMFGSFCLGK 446


>gi|78213961|ref|YP_382740.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9605]
 gi|123577422|sp|Q3AGU7|MNME_SYNSC RecName: Full=tRNA modification GTPase mnmE
 gi|78198420|gb|ABB36185.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9605]
          Length = 450

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 135/438 (30%), Positives = 233/438 (53%), Gaps = 15/438 (3%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPS 71
                I++IRLSGP+       +     +++    +    +    +GR LD+ LL++   
Sbjct: 16  PGQGGIAVIRLSGPAAEATGRSVVHCPGRQEWGSHRVVYGHVIDSEGRRLDEVLLLLMRG 75

Query: 72  PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131
           P SFTGED  E H HGG+  V  +LE++ + P +R A PGEFS+RA  NG++DL  AE++
Sbjct: 76  PRSFTGEDVVEIHCHGGVIAVQRVLEKVLRQPGVRRAQPGEFSQRAVLNGRLDLTRAEAV 135

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           ++L+++ +     L+M G+ G + +      ++L    + +EA +DF E  D+     + 
Sbjct: 136 SELVAARSRRAAELAMAGLDGGIQAEITVLRERLLDQLTELEARVDFEE--DLPPLDGEA 193

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
           +L  +  ++ ++   +  G+ G+ +R G ++ ++G  N GKSSL N L++++ AIVTD+P
Sbjct: 194 LLQQLQAVRLELQQLVRDGERGDALRQGLRVALVGRPNVGKSSLLNRLSRRERAIVTDLP 253

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--- 308
           GTTRD+L  ++ LEG  + + DTAGIR TDD VE+ GI R+   +  AD++LL+ +    
Sbjct: 254 GTTRDLLESEIVLEGVPITLLDTAGIRSTDDAVEQLGIARSEQALATADVVLLVLDGHAG 313

Query: 309 ----NSKKEISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLEELINKIKSILS 363
               ++      P  I  I +  K+DL +  + +  D  +S+  G G  +L+  +     
Sbjct: 314 WTAEDAALLARIPAQIPRILVANKADLPAGAFPQPVDVQLSALEGMGEADLVQALLER-C 372

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAENLRLASVSLGKITGC 422
                    +  ++R     ++    L  +  +  +    D    +LR A  +LG+ITG 
Sbjct: 373 GAAGTDGMLVALNQRQRDLAARAAEALARSQEVAAQQLPWDFWTIDLREAIRALGEITGE 432

Query: 423 VDVEQLLDIIFSKFCIGK 440
              E +LD +FS+FCIGK
Sbjct: 433 ELTEAVLDRVFSRFCIGK 450


>gi|51858159|dbj|BAD42317.1| Thiophene and furan oxidation protein [Symbiobacterium thermophilum
           IAM 14863]
          Length = 437

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 141/440 (32%), Positives = 227/440 (51%), Gaps = 27/440 (6%)

Query: 24  RLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
           R+SG    QV E I + ++  P         +  +     G  +D+ L +V   P S+TG
Sbjct: 2   RISGADALQVAERIFRPRRGRPLGCRRSHTVTYGWVVTPGGDRIDEALALVMRGPHSYTG 61

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HGG   V  +LE+  +    RLA PGEF+RRAF NG++DL +AE++ DLI +
Sbjct: 62  EDVVELQCHGGQLAVRRVLEQALQA-GARLAEPGEFTRRAFLNGRLDLSQAEAVVDLIRA 120

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           +T+     ++  + G L    G+  ++L  + + +EAD+DF E E ++  + +EV     
Sbjct: 121 KTDRAMAAAVAHLRGSLRQAIGRIRERLMEMMAHLEADIDFPELE-LEVQTREEVAAGCA 179

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           +   ++   +   + G I+R G + V+ G  N GKSSL N L +++ AIVT IPGTTRDV
Sbjct: 180 WCLGEVERLLGGARTGRILREGLRAVLAGRPNVGKSSLLNRLVRENRAIVTPIPGTTRDV 239

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSK 311
           +   ++L G  V++ DTAG+R TDD VE+ G+ RT   +  A L+L++ +         +
Sbjct: 240 IAEWVELGGVPVQLFDTAGLRPTDDPVERIGVARTHEALAQAHLVLVVVDAAAGLGPEDR 299

Query: 312 KEIS-FPKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
           + IS  P+    + +  K D         L           +S+ TGEG + L  ++  +
Sbjct: 300 EWISQLPQGAARVGVANKIDLNPAFELSALREALGGAPVVGVSAETGEGFDALEAEVARV 359

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENLRLASVSLGKIT 420
                      +  + R    + +   +L  A    E   G +++A +LR A ++LG++T
Sbjct: 360 AGAFDASEE--LLVNARQAEAIRRARNHLRDAQATLESGLGDELVAIDLRAAWMALGEVT 417

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G    E+LLD IFS+FCIGK
Sbjct: 418 GETAGEELLDQIFSRFCIGK 437


>gi|194333061|ref|YP_002014921.1| tRNA modification GTPase TrmE [Prosthecochloris aestuarii DSM 271]
 gi|194310879|gb|ACF45274.1| tRNA modification GTPase TrmE [Prosthecochloris aestuarii DSM 271]
          Length = 476

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/466 (32%), Positives = 248/466 (53%), Gaps = 31/466 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFG--LD 57
           E + I A++T     A+S++R+SG   F + + +  K      P          FG   D
Sbjct: 13  EGDPIAAIATPVGVGALSVVRMSGGGVFAIADKVFTKAHAPEVPIADSPGYTAHFGRLYD 72

Query: 58  GRI-LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           G + +D+ +++VF +P SFT E+  E   HGG  V   +L+ L      RLA PGEF+RR
Sbjct: 73  GDLMVDEVIVLVFRAPNSFTVENMVEITCHGGPVVTRHVLQ-LLLDNGCRLAQPGEFTRR 131

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDLLEAE++ ++I + +E   R ++  M G LS       ++L    + +E +L
Sbjct: 132 AFINGRIDLLEAEAIGEMIHARSESAYRTAVNQMKGGLSGKLDTLRERLLTSCAMLELEL 191

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DFSE EDV+  S  E+ + +  L+ ++   +   + G ++  G    I+G  NAGKS+L 
Sbjct: 192 DFSE-EDVRFQSRDELTDQVERLQCEVGQLVDSYQHGRLLSEGVATAIIGRPNAGKSTLL 250

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL  ++ AIV+ +PGTTRD +      +  + +++DTAG+RE  + +E EGI+R++ ++
Sbjct: 251 NALLGEERAIVSHMPGTTRDYIEECFVYDKTMFRLTDTAGLREAVEEIEHEGIRRSYEKI 310

Query: 297 ENADLILLLKEINS---KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----------- 342
             ADLIL L +I++    +EI+  + I   + GTK  + +  T+                
Sbjct: 311 AQADLILYLMDISAGDFAEEIAAIRTIAAQYPGTKMLVAANKTDRTASCEERMQMVGQET 370

Query: 343 ------ISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-S 394
                 IS+   EGL+EL   + ++  N  K    S+  +  RH   L      L+ A  
Sbjct: 371 GCMVLGISALQQEGLDELKKAMGAMTENLDKLHDASVLVTSMRHYEALRNASDALQNARE 430

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L +++   + IA  LR A   +G+ITG V  E++L++IF +FCIGK
Sbjct: 431 LIDREEETEFIAFELRSALDYVGEITGKVVSEEVLNVIFDRFCIGK 476


>gi|124006860|ref|ZP_01691690.1| tRNA modification GTPase TrmE [Microscilla marina ATCC 23134]
 gi|123987541|gb|EAY27250.1| tRNA modification GTPase TrmE [Microscilla marina ATCC 23134]
          Length = 463

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 148/460 (32%), Positives = 245/460 (53%), Gaps = 24/460 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----D 57
             +++TI A+ST +   AI +IR+SG   F VC+ +   K     +AS    FG     +
Sbjct: 7   TQKEDTIVALSTPSGSGAIGVIRVSGKDTFAVCDQVFYGKT-LSEQASHTVHFGTIRNDE 65

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G+I+D+ +  +F +P SFT ED  E   HG   ++  +++ L      RLA  GEF++RA
Sbjct: 66  GQIIDEVVAALFKAPRSFTKEDVIEVSCHGSQYIIQQVIQLLI-GKGARLAKAGEFTQRA 124

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           + NG++DL +AE++ADLI+S+++   +++M+ M G  S    Q  ++ T + + +E +LD
Sbjct: 125 YLNGRMDLAQAEAIADLIASDSKAAHQVAMKQMRGGFSKKITQLREEFTKLAALLELELD 184

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE EDV+  +  E+   +  LK  ++       LG  I+NG  + I+G  NAGKS+L N
Sbjct: 185 FSE-EDVEFANRDEMQRQLNHLKTAVTDMAQSFALGNAIKNGVPVAIVGKPNAGKSTLLN 243

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL ++D AIV+ IPGTTRD +  ++ LEG   +  DTAG+RET D VE  GI R F +++
Sbjct: 244 ALLQEDKAIVSAIPGTTRDSIEDEVVLEGIRFRFIDTAGLRETADEVESIGIARAFAKMK 303

Query: 298 NADLILLLKEINSKKEISFPK----------NIDFIFIGTKSDLYSTY-----TEEYDHL 342
            + ++L + +   +K   +            +   I +  K D Y+ +            
Sbjct: 304 ESQILLYMFDAVEEKREDWQAQVAQLQADHPDTKVIVVANKIDEYARFDLFLPDGVVGCG 363

Query: 343 ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
           IS+   + ++ L   +   +  ++       I ++ RH   L  T++ L       +   
Sbjct: 364 ISAKEHQQIDRLQQLLIEAVQAHQLSNQDQVIVTNLRHYEALQDTLKALAQVQQTLDLGL 423

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++A ++R A   LG+ITG +    LL+ IFSKFCIGK
Sbjct: 424 STEMVASDIRTAIYHLGEITGQISNNDLLEFIFSKFCIGK 463


>gi|195111166|ref|XP_002000150.1| GI22686 [Drosophila mojavensis]
 gi|193916744|gb|EDW15611.1| GI22686 [Drosophila mojavensis]
          Length = 494

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/472 (33%), Positives = 256/472 (54%), Gaps = 40/472 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDG-RILDK 63
           TI+++S+G +   +S+IR+SGP   Q    +    +  P  R A L+ F+      I+D+
Sbjct: 25  TIYSLSSGHVKCGVSVIRVSGPQTKQALRAVVNNSEYEPKQRLAYLKSFYHPTSKEIIDR 84

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGED+ EF VHG +AV++ +L+ L ++P LR A PGEF++RAF  GK+
Sbjct: 85  GLLLWFPGPASFTGEDACEFQVHGSLAVISAMLDALGQLPGLRPAQPGEFTKRAFFGGKL 144

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E L+DLI +ETE QR+ ++   +G L  LY  W  +L    + +EA +DF+E+E 
Sbjct: 145 DLTEVEGLSDLIHAETEAQRKQALLQSTGTLGRLYDNWRKRLIRCAAHLEAYIDFAEDEQ 204

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  ++ +I +H++  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 205 IEGGVVLKLTKELKAVQREIRAHLNDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRA 264

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVTD  GTTRD++       GY V  +DTAG+R+ T D +E EG+ R    +  +DLI
Sbjct: 265 VSIVTDQAGTTRDIIETTHSFGGYPVVFADTAGLRKHTTDAIEMEGMARARQCLAQSDLI 324

Query: 303 LLLKEINSKKEI---------------------SFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           LLL +  + +++                        +      +  K+D  S   EE DH
Sbjct: 325 LLLTDAKALRDVDSNESLNGRIDSYLQELDIPKELCRGKRLQLVANKTDTLS--AEEIDH 382

Query: 342 --------LISSFTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLE 391
                    IS    + L E +  ++ +L       +      +H R+   L + + ++E
Sbjct: 383 LRKLKDVLCISCHKQDNLPEFLGSLEQLLQQLCGTPQAEHPRITHSRYRQQLERCIEHIE 442

Query: 392 MASLNEKDC---GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   + K      + I A+ LR +   + +ITG V  E +LD+IF  FCIGK
Sbjct: 443 IFLRDYKPDVFPDMAIAAQQLRKSVRCIERITGHVSCEDILDVIFKDFCIGK 494


>gi|78187867|ref|YP_375910.1| tRNA modification GTPase TrmE [Chlorobium luteolum DSM 273]
 gi|123582460|sp|Q3B1B4|MNME_PELLD RecName: Full=tRNA modification GTPase mnmE
 gi|78167769|gb|ABB24867.1| tRNA modification GTPase trmE [Chlorobium luteolum DSM 273]
          Length = 473

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/464 (32%), Positives = 244/464 (52%), Gaps = 33/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR--------KASLRYFFGLDG 58
            I A++T     A++I+R+SG   F + +   +KK              A +   F  +G
Sbjct: 13  PIAAIATPVGVGALAIVRMSGKGVFGIADRAFRKKSGKAFSFEAAEGFTAHVGTLFDGEG 72

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ + +VF +P SFT ED  EF  HGG  VV  +L  L      RLA PGEF+RRAF
Sbjct: 73  -MVDEVVALVFRAPSSFTMEDMVEFTCHGGPVVVRRVLAALL-DGGCRLAEPGEFTRRAF 130

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDLL+AE++ ++I + T+   R ++  M G LS    +  + L    + +E +LDF
Sbjct: 131 LNGRIDLLQAEAIGEMIHARTDGAFRTAVTQMQGGLSRRLLEMREGLLQSCALLELELDF 190

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           SE EDV+  S +E+  +++ L+ ++S  +   + G ++  G   VI G  NAGKS+L N 
Sbjct: 191 SE-EDVEFQSREELRGEVIRLQTELSGLVDSYQHGRLLSEGVSTVIAGRPNAGKSTLLNK 249

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ +IV+ +PGTTRD +      +  + +++DTAG+RE+++ VE EGI+R++ ++  
Sbjct: 250 LLGEERSIVSHMPGTTRDYIEECFVYDKTMFRLTDTAGLRESEEDVEHEGIERSYRKISE 309

Query: 299 ADLILLLKEINSK-------KEISFPKNID---FIFIGTKSDLY----------STYTEE 338
           ADLIL + +++ +          +          I +  K+DL            T    
Sbjct: 310 ADLILYMLDVSGEGFREEAVSAAALCAGHPEARMILLANKTDLVKDSALRIAALETAAGS 369

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMAS-LN 396
               +++ +GEG+EEL   + S++    K    S+  +  RH   L      L  A  L 
Sbjct: 370 PVVPMAARSGEGIEELKLLMASMVEGLDKLHEASVLVTSLRHYEALRNASDALHNALGLI 429

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E     ++IA  LR A   +G+ITG V  E+LL+ IF +FCIGK
Sbjct: 430 EGGEATELIAFELRSALDYVGEITGKVVSEELLNTIFGQFCIGK 473


>gi|57238770|ref|YP_179906.1| tRNA modification GTPase TrmE [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578693|ref|YP_196905.1| tRNA modification GTPase TrmE [Ehrlichia ruminantium str.
           Welgevonden]
 gi|81819295|sp|Q5HCD7|MNME_EHRRW RecName: Full=tRNA modification GTPase mnmE
 gi|57160849|emb|CAH57749.1| putative tRNA modification GTPase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417319|emb|CAI26523.1| tRNA modification GTPase [Ehrlichia ruminantium str. Welgevonden]
          Length = 439

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 163/444 (36%), Positives = 250/444 (56%), Gaps = 17/444 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+ T    S +++IR+SG    +            PR A+    +     ++D+ ++
Sbjct: 3   TIFALCTPWGKSGVAVIRVSGQDAVKTFMHFKISNAIKPRVATFTPLYNAAHEVIDEVIV 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F +P SFTGED  E H HG IAV+  IL EL K+     A PGEFS RAF N K+DL 
Sbjct: 63  VYFSAPNSFTGEDVVELHTHGSIAVIRMILCELGKI--FIPAGPGEFSLRAFLNNKVDLT 120

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
            AE++ DLI++ETEMQ + ++  MSG L  LY  W  +L  + S +EA +DF E  +V +
Sbjct: 121 RAEAIVDLINAETEMQAKQAIRQMSGSLEKLYQSWRQQLIDVLSNMEAYIDFPE--EVTS 178

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            + + +   +  +K  + +H++ G+ GEI+R G  + ILG  N+GKS+LFN LAK+D+AI
Sbjct: 179 SAVENISFLLDKIKESLENHLNDGRKGEILRQGIYVAILGEPNSGKSTLFNHLAKRDIAI 238

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           V++  GTTRDVL   +D+ GY + I DTAGIR+++D VE+EGI+R  L+ E+AD  +++ 
Sbjct: 239 VSEYAGTTRDVLETHIDIAGYPIVIIDTAGIRDSNDPVEQEGIRRAKLKAESADFKIIML 298

Query: 307 EINSKK----EISFPKNIDFIFIGTKSD-----LYSTYTEEYDHLISSFTGEGLEELINK 357
               K     EI    +   I + +KSD                 +S     G+E L++ 
Sbjct: 299 PYEKKDALNNEIIDLIDDRSICVLSKSDSIITQNLININNINFIPVSVCCNLGIEHLLSA 358

Query: 358 IKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           I+  +   FK    S   + +R   H+   V  L+  S    +  +++I+E+LRL+   L
Sbjct: 359 IQKKVEADFKFCSTSPFITSERQRVHIQNAVNILKNISF---ELPMELISEDLRLSVREL 415

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            K+ G +  E++LD +F KFCIGK
Sbjct: 416 EKVVGVISNEEILDNVFGKFCIGK 439


>gi|205422403|sp|A2SMI8|MNME_METPP RecName: Full=tRNA modification GTPase mnmE
          Length = 471

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 150/472 (31%), Positives = 240/472 (50%), Gaps = 35/472 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I A++T     A+ I+R+SG     + E +C +    PR A    F    G  
Sbjct: 3   LPRHHDPIVAIATAPGRGAVGIVRVSGRGLGALIEAVCGRAL-QPRHAHYGPFLDAQGEA 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVV----NGILEE---------LAKMPNLRL 107
           +D+GL + FP+P S+TGE+  E   HGG  ++       LE          L ++  LR+
Sbjct: 62  IDQGLALHFPAPHSYTGEEVLELQAHGGPVLLQLLLARCLEAAAQPDARSGLPRLRGLRV 121

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEF+ RAF N K+DL +AE++ADLI + TE   R +   ++G  S       D+L  
Sbjct: 122 AEPGEFTERAFLNDKLDLAQAEAVADLIDASTEAAARSAGRALAGAFSQQVDTLRDRLIE 181

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA LDF E E++      +    +  +   + + +++ K G ++R G ++V+ G 
Sbjct: 182 LRMLVEATLDFPE-EEIDFLEKADARGRLARIAEALDAVLARAKQGALLREGLRVVLAGQ 240

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV--- 284
            N GKSSL NALA  ++AIVT I GTTRD +   + +EG  + + DTAG+R  DD     
Sbjct: 241 PNVGKSSLLNALAGAELAIVTPIAGTTRDKVAETIQIEGVPLHVVDTAGLRAEDDARDEV 300

Query: 285 EKEGIKRTFLEVENADLILLLKEIN---------SKKEIS--FPKNIDFIFIGTKSDLYS 333
           E+ G++R++  +  AD ++ L ++          ++++I    P  +  + +  K+D  +
Sbjct: 301 ERIGMQRSWGAIGEADAVIFLHDLTRAGDPGYDAAERDIEQRLPAGVHVLDVHNKADAAA 360

Query: 334 TYTEEYDHLI---SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                        S+ TGEGL+ L  ++  +   +         +  RHL  L  T  +L
Sbjct: 361 AGAAALAPQALRLSARTGEGLDTLRRRLLQLAGWQAGS-EGVFIARTRHLQALQATAEHL 419

Query: 391 EMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             A    +  D  LD++AE LRLA  +LG ITG    ++LL  IFS+FCIGK
Sbjct: 420 VRARQLADRADAALDLLAEELRLAHDALGAITGRYTPDELLGDIFSRFCIGK 471


>gi|90194104|gb|ABD92613.1| ThdF [Actinobacillus equuli subsp. equuli]
          Length = 436

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 147/439 (33%), Positives = 239/439 (54%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRISGPLAQEVAKEVLGKEL-NPRLANYLPFKDQDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   ++    + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 EGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL+ +   + 
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQT 298

Query: 313 EISF-----------PKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFTGEGLEELI 355
             +F           P+NI    I  K DL   +   +E D      +S+ T  G++ L 
Sbjct: 299 AEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|288928132|ref|ZP_06421979.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330966|gb|EFC69550.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 460

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/460 (30%), Positives = 237/460 (51%), Gaps = 23/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF------PRKASLRYFF 54
           + ++++TI A++T     A+ +IR+SG     + +   K  K        P+     +  
Sbjct: 4   LLNDRQTICALATSVG-GALGVIRVSGNDAIDIVDHAFKAPKGKKLHALPPQTVQYGHIV 62

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
               + +D+ L+  F +P S+TGE+S E   HG   ++N +L+ L ++   R A PGEF+
Sbjct: 63  DEGEQTIDEVLVTCFRAPHSYTGENSVEISCHGSAYILNEVLKLLVRL-GCRQAQPGEFT 121

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI++      +L++  + G  S       DKL HI S IE 
Sbjct: 122 QRAFLNGKMDLSQAEAVADLIAATNRASAQLALGQLRGHFSGELAALRDKLLHITSLIEL 181

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ +DV     +E+      ++  I++  +  + G  I+ G  + I+G +N GKS+
Sbjct: 182 ELDFSD-QDVTFADRQELQALAEEIRTKIATLATSFETGRAIKAGISVAIVGKTNVGKST 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L K++ AIV+DI GTTRDV+   + + G   +  DTAGIR+T D +E  GI+RT+ 
Sbjct: 241 LLNRLLKEERAIVSDIHGTTRDVIEDTIQINGINFRFIDTAGIRKTSDEIESLGIERTYQ 300

Query: 295 EVENADLILLLKE-INSKKEI----SFPKNIDFIFIGTKSDLYS------TYTEEYDHLI 343
           ++  A ++L + +   +  EI    +  +    I +  K+D  S      ++TE+   + 
Sbjct: 301 KLTEAAIVLWVIDKAPTLSEIEEMNAHTRGKRLIVVSNKTDAQSFAFPTFSWTEQPTFVS 360

Query: 344 SSFT-GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCG 401
            S      +E L   I +  +         + ++ RH   LS  +  ++        D  
Sbjct: 361 VSAKFNTNIETLETCIYNAANIPEIHENDVVVTNVRHYEALSHALASIQRVLEGIALDLS 420

Query: 402 LDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
            D++AE+LR     L +IT G +   ++L  IF  FCIGK
Sbjct: 421 GDLLAEDLRQCLHFLAEITGGSITSNEVLGNIFRHFCIGK 460


>gi|156742840|ref|YP_001432969.1| tRNA modification GTPase TrmE [Roseiflexus castenholzii DSM 13941]
 gi|205415804|sp|A7NN19|MNME_ROSCS RecName: Full=tRNA modification GTPase mnmE
 gi|156234168|gb|ABU58951.1| tRNA modification GTPase TrmE [Roseiflexus castenholzii DSM 13941]
          Length = 464

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/470 (30%), Positives = 230/470 (48%), Gaps = 36/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFGLD 57
           M ++ +TI A++T      I I+R+SG     + E I    +P    P +    +     
Sbjct: 1   MMYD-DTIAAIATPPGEGGIGIVRISGKDALSILERIFVPVRPGRWKPYRMRYGHVVDGA 59

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  +D+ L +    P SFT ED+ E  VHGG  VV  +L++ A     R ANPGEF+ RA
Sbjct: 60  GVRVDEALAVFMRGPRSFTAEDTVEISVHGGPLVVERVLQQ-ALAAGARAANPGEFTMRA 118

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE+  D+I++ T     L+   + G LS    +    L    ++  A +D
Sbjct: 119 FLNGRIDLTQAEATLDIITARTTTALALAEAQLGGWLSHELRRIRALLIDPLAYCTALVD 178

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E+E V+    +  L         + + ++  + G I R G +  ++G  NAGKSSL N
Sbjct: 179 FPEDE-VEPQDVETPL---TAAVQALDTLVATAEQGIIYRQGARATLVGRPNAGKSSLLN 234

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL + D AIVT IPGTTRD L    +L G  V ++DTAGI E+ D VE+ G++R+   V 
Sbjct: 235 ALLRIDRAIVTPIPGTTRDTLEETANLGGVPVVLTDTAGIVESVDPVERLGVERSRQAVA 294

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYS------------------ 333
            ADL+LL+ E       + ++ ++  ++   + I  K DL                    
Sbjct: 295 QADLLLLVVEGVSQPVDDDREIVALTRDKRTVLIVNKIDLIDGADAVQECMKFLKCAYEN 354

Query: 334 --TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                 +    +S+ TG+GL+ L   +  +L          + ++ RH   L++   +  
Sbjct: 355 LRGVPFDATIAVSALTGQGLDMLGATVARLLLGDSSPADGRLVTNVRHRDALARAATHAR 414

Query: 392 MASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  +  +    D++A +L  A  ++G++TG    + LL  IFS+FCIGK
Sbjct: 415 DALDSFRRGVSPDLLAVDLTAAINAIGEVTGEAVGDDLLHAIFSRFCIGK 464


>gi|90194108|gb|ABD92615.1| ThdF [Actinobacillus lignieresii]
 gi|90194114|gb|ABD92618.1| ThdF [Actinobacillus pleuropneumoniae]
 gi|90194116|gb|ABD92619.1| ThdF [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|90194118|gb|ABD92620.1| ThdF [Actinobacillus pleuropneumoniae]
          Length = 436

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 147/439 (33%), Positives = 239/439 (54%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRISGPLAQEVAKEVLGKEL-KPRLANYLPFKDQDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   ++    + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 EGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL+ +   + 
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQT 298

Query: 313 EISF-----------PKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFTGEGLEELI 355
             +F           P+NI    I  K DL   +   +E D      +S+ T  G++ L 
Sbjct: 299 AEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|90194120|gb|ABD92621.1| ThdF [Actinobacillus pleuropneumoniae serovar 8 str. 405]
          Length = 436

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 149/439 (33%), Positives = 241/439 (54%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      +SI+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVSILRISGPLAQEVAKEVLGKEL-KPRLANYLPFKDQDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ + K+  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDILLKRILKIKGIRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   ++    + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 EGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL+ +   + 
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQT 298

Query: 313 EISF-----------PKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFTGEGLEELI 355
             +F           P+NI    I  K DL   +   +E D      +S+ T  G++ L 
Sbjct: 299 AEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|119486976|ref|ZP_01620848.1| tRNA modification GTPase [Lyngbya sp. PCC 8106]
 gi|119455905|gb|EAW37039.1| tRNA modification GTPase [Lyngbya sp. PCC 8106]
          Length = 469

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 150/465 (32%), Positives = 241/465 (51%), Gaps = 34/465 (7%)

Query: 6   ETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           ETI A++T       +I I+RLSG     + + +       P + S R  +G        
Sbjct: 9   ETIVAIATAIVPQQGSIGIVRLSGSQAIAIAKLLFAAPGRQPWE-SHRILYGYIRHPQTQ 67

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++D+ LL++  +P S+T ED  EFH HGGI  V  +L+ L      RLA PGEF+ RAF
Sbjct: 68  QVVDEALLLLMLAPRSYTREDVVEFHCHGGIIAVQQVLQ-LCLEAGARLAQPGEFTLRAF 126

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AES+A+L+ S+++     ++ G+ G+L++   Q       + + IEA +DF
Sbjct: 127 LNGRIDLTQAESIAELVGSQSQAAALAAIAGLQGKLATPIRQLRATCLDVLAEIEARIDF 186

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D+   +  E+++ +  +  ++S  I   + GE +R+G K+ I+G  N GKSSL NA
Sbjct: 187 EE--DLPPLNVPEIVSQVNQISAELSILIETAEKGERLRSGLKVAIVGRPNVGKSSLLNA 244

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            ++ D AIVTD+PGTTRDV+   L + G  V++ DTAGIR ++D VEK GI+R+    + 
Sbjct: 245 WSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRNSEDQVEKIGIERSQTAAKL 304

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT----- 347
           ADL+LL  +       + ++     ++   I I  K D  S    +              
Sbjct: 305 ADLVLLTIDAEAGWTESDEEIYQQVQHRPLILILNKIDRVSANELDAKVEEILAKLNREN 364

Query: 348 ----------GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL- 395
                      +G+ EL   I + ++    +     I  ++R    +++  + L+   + 
Sbjct: 365 LLTVKTAAALNQGITELETAILTAINAGNLQAKNLDIAINQRQASVITRAKKALDQMKIT 424

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            E    LD    +LR A  +LG++TG    E +LD IFS+FCIGK
Sbjct: 425 IENQLPLDFWTIDLREAIQALGEVTGEEVTESVLDRIFSRFCIGK 469


>gi|90194086|gb|ABD92604.1| ThdF [Actinobacillus minor NM305]
          Length = 436

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 142/439 (32%), Positives = 239/439 (54%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRVSGPLANEVAKAVVGKEL-KPRLANYLPFMDTDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDLLLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   +++   + K G I+R G K+V+ G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 EAKLNDIITQLANVRKEAKQGSILREGMKVVMPGKPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL+ + + ++
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQ 298

Query: 313 E-----------ISFPKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFTGEGLEELI 355
                          P+NI    I  K DL   S   E+ D      +S+ T  G++ L 
Sbjct: 299 ADVFKTEWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTLIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKQSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|90194106|gb|ABD92614.1| ThdF [Actinobacillus equuli subsp. haemolyticus]
          Length = 436

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 146/439 (33%), Positives = 237/439 (53%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRISGPLAQEVAKEVLGKEL-KPRLANYLPFKDQDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   ++    + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 EGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--- 309
           TTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL+ +     
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQI 298

Query: 310 --------SKKEISFPKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFTGEGLEELI 355
                   +      P+NI    I  K DL   +   +E D      +S+ T  G++ L 
Sbjct: 299 AEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|282880433|ref|ZP_06289141.1| tRNA modification GTPase TrmE [Prevotella timonensis CRIS 5C-B1]
 gi|281305704|gb|EFA97756.1| tRNA modification GTPase TrmE [Prevotella timonensis CRIS 5C-B1]
          Length = 478

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 150/465 (32%), Positives = 236/465 (50%), Gaps = 33/465 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGL----DGRI 60
           TI A++T A   AI IIR+SG    Q+ + +    K K      S    +G         
Sbjct: 16  TICALATPAG-GAIGIIRISGKDAIQIADKVFVTSKHKKLHDAKSHTILYGRIVDSQQET 74

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  L+ VF SP S+TGEDS E   HG   ++  ILE L K    R A PGE+++RAF N
Sbjct: 75  IDDVLVSVFRSPHSYTGEDSVEISCHGSRYIIKTILETLIK-EGCRQAAPGEYTQRAFFN 133

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI+S        +M  + G  S+      ++L  + S IE +LDFS+
Sbjct: 134 GKLDLSQAEAVADLIASTNRATHHAAMSQLKGNFSNELATLRNELLKMTSLIELELDFSD 193

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED++  +  E+L     +KN I++     + G  I+ G  + I+G +N GKS+L N L 
Sbjct: 194 HEDLEFANRDELLALAHKIKNRITTLAHSFETGNAIKQGVPVAIIGKTNVGKSTLLNQLL 253

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++D AIV++I GTTRDV+    ++ G   +  DTAGIR+T D +E  GI+RT+ ++E A 
Sbjct: 254 EEDKAIVSNIHGTTRDVIEDTTEINGITFRFIDTAGIRKTTDEIENLGIERTYQKIEEAK 313

Query: 301 LILLLKE-INSKKE----ISFPKNIDFIFIGTKSDLYSTYT------------------E 337
           ++L L +   +K+E    +   K+   I I  K D+  T T                  +
Sbjct: 314 IVLWLTDEAPTKQEVDDLLKRIKDKSLICIQNKMDISPTPTLSVFENITNQKSNERNAKK 373

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
            +   +S+  G  ++ L + +  +           I +  RH   L ++   +       
Sbjct: 374 RFSLQLSAKLGTNMDLLRSTLCQVAEVPEVTENDVIVTSTRHYNALLRSEESISRVIEGL 433

Query: 397 EKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
           E +   D+++E+LRL    L +ITG  +   ++L+ IF  FCIGK
Sbjct: 434 ELELSGDLLSEDLRLCLEHLAEITGGLITTHEVLNNIFQHFCIGK 478


>gi|307128609|ref|YP_003880639.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri CARI]
 gi|306483071|gb|ADM89941.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri CARI]
          Length = 454

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 153/457 (33%), Positives = 237/457 (51%), Gaps = 20/457 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK---KKPFPRKASLRYFFGLD 57
           M    +TI A++T +   AI++IR+SG +  ++ + I      KK F  K S+   +   
Sbjct: 1   MLKNNDTIVAIATPSGYGAIAVIRISGKNSIKILKKIFLSFSVKKNFSEKRSINLGYIKS 60

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             +I+DK L+ +F  P+S+TGED  E   HG I + N +L  +      RLANPGEF+ R
Sbjct: 61  KNKIIDKVLIFIFKKPKSYTGEDIVEISCHGSIYIQNKLLSIII-DQGARLANPGEFTLR 119

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGKIDL +AES+ D+++SET      ++  M G +S+L      KL    S IE +L
Sbjct: 120 AFLNGKIDLCQAESILDIVNSETYFSHEFAINQMRGNISNLIKNLRKKLIDFLSLIEFEL 179

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DFSE E+    +  E    +  +   +   I   K+G  ++NG  + I+G  N GKS+LF
Sbjct: 180 DFSE-ENYNIINYLEFKKLLDNIIKKLKYLIKSFKIGNALKNGISVSIIGCPNVGKSTLF 238

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLE 295
           N L K + +IV+++ GTTR+ +   L + G   +  DTAGI  +T + +EK GIK+T+  
Sbjct: 239 NKLLKYERSIVSNMAGTTRNYIEDSLIINGIKYRFIDTAGINNKTKNYIEKLGIKKTYSN 298

Query: 296 VENADLILLLKE---------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           ++ +D+IL + +            K +  +P N     I  K DL        + +  S 
Sbjct: 299 IKKSDIILYVFDNFNKKIIYNKKKKLQKEYP-NKKIFIIINKYDLIKKNINYKNIINISA 357

Query: 347 T-GEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
             G G+ +L+ KI +        K    + +  RH     + V YL     N EK    +
Sbjct: 358 KYGYGINKLLYKITNFYKKMINLKKNSIVITQTRHYESFKEAVFYLSKVKENLEKSIFPE 417

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++ ++R A   LGK+TG V  E++L  IFS+FCIGK
Sbjct: 418 FLSIDIRTALDYLGKVTGEVTNEEILSNIFSQFCIGK 454


>gi|302672308|ref|YP_003832268.1| tRNA modification GTPase TrmE [Butyrivibrio proteoclasticus B316]
 gi|302396781|gb|ADL35686.1| tRNA modification GTPase TrmE [Butyrivibrio proteoclasticus B316]
          Length = 478

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 143/474 (30%), Positives = 235/474 (49%), Gaps = 37/474 (7%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRYFFGL 56
           N   +TI A++T    + I IIR+SGP   ++C+ I             +  ++ Y + +
Sbjct: 7   NFNGDTICAIATAMSDAGIGIIRVSGPMALEICDKIYVSAAKEHNLLKHKANTITYGYIV 66

Query: 57  DG------RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANP 110
           D       +I+D+ ++    +P S+T ED  E + HGG+ ++N IL+ L K    R+A P
Sbjct: 67  DNSLPEENQIIDEVMISFMKAPHSYTREDVIEINSHGGMLIMNQILQLLLK-NGCRIAEP 125

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           GEF++RAF NG+IDL +AE++ D+IS++       S   + G++        +K+ +  +
Sbjct: 126 GEFTKRAFLNGRIDLTKAEAIMDVISAQNNFALEASRNQLQGKIYKKIKSLREKIIYQMA 185

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           FIE+ LD  E  D+  FS K  +  I  + ++I   I     G+I ++G K VI+G  NA
Sbjct: 186 FIESALDDPENYDLTGFSDKLDII-ISDIMSEIGHMIDTADEGKIRKDGIKTVIVGKPNA 244

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSL N L   + AIVTDI GTTRD++   + L   ++ + DTAGIR T+D++EK G+ 
Sbjct: 245 GKSSLLNTLTGDERAIVTDIAGTTRDIIEETVRLGDIVLHLIDTAGIRNTEDVIEKIGVD 304

Query: 291 RTFLEVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYT-------- 336
           +    ++ A+L+L + +  +         I   KN   I +  K DL             
Sbjct: 305 KAKSMIQEAELVLYILDSTAEIDDEDNDIIDLCKNKKTIVLLNKDDLSDEIKITDDIVRM 364

Query: 337 --------EEYDHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTV 387
                          S   G G+++L   +  + L+ +         ++ RH   L  + 
Sbjct: 365 RFSDTSNYNLPIIKTSMLKGNGIDDLKKAVSDLFLNGEIVPKQELYITNLRHKALLQDSF 424

Query: 388 RYLEMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L++  +  E+    D    +L  A  SLG+I G    + L++ IFSKFC+GK
Sbjct: 425 DSLQLVRNSIEQGLSEDFYTVDLNDAYASLGEIIGEEVGDDLVEEIFSKFCMGK 478


>gi|154245777|ref|YP_001416735.1| tRNA modification GTPase TrmE [Xanthobacter autotrophicus Py2]
 gi|154159862|gb|ABS67078.1| small GTP-binding protein [Xanthobacter autotrophicus Py2]
          Length = 431

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 166/436 (38%), Positives = 255/436 (58%), Gaps = 8/436 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDKG 64
           +T+FA+S+G LP+ ++++R+SGP        +C    P PR A          G  LD+G
Sbjct: 3   DTLFALSSGRLPAGVAVLRISGPEAAAAVLALCG-VLPPPRVARYGALSDPRTGETLDRG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P S TGED AE H+HGG AVV  +L  L+ +P LR A  GEF+RRA  NGK+D
Sbjct: 62  LILFFPGPASATGEDVAELHLHGGRAVVAAVLRALSALPGLRPAEAGEFTRRAHANGKLD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADL+++E+E QR+ ++   SG LS    +W   L    + IEA +DFS+E DV
Sbjct: 122 LAEVEGLADLVAAESEAQRKQALALASGALSRRVEEWRVGLVSALALIEAGIDFSDESDV 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + + +  +  LK ++ + ++    GE +R+G  + I G  NAGKS+L N LA ++ 
Sbjct: 182 SGEVTMDAVARLARLKEELLAALTDAARGERVRDGLVVAISGPPNAGKSTLLNRLAGREA 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+ +PGTTRDVL + L+L G  V + DTAG+RET D+VE EG++R     E AD++L 
Sbjct: 242 AIVSALPGTTRDVLEVHLELAGQAVTLLDTAGLRETSDLVEAEGVRRALARAEGADVVLW 301

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           L +  S+   +       + + TK D  +     +   IS+ +G G++ L+++++     
Sbjct: 302 LCDTGSQPPPALA---HAVKVRTKIDRDAAIPLGW-IGISAASGAGVDTLVSRLEQEADR 357

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
              + P ++ + +R    L     +LE A L +     ++ AE++RLA  +L ++ G VD
Sbjct: 358 LGGREP-ALITRERQRRALEVATLHLERA-LGDFGGHEELRAEDVRLAVRALDQLIGRVD 415

Query: 425 VEQLLDIIFSKFCIGK 440
           VE +LD +FS FCIGK
Sbjct: 416 VEDVLDALFSTFCIGK 431


>gi|90194082|gb|ABD92602.1| ThdF [Mannheimia haemolytica]
          Length = 436

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 141/439 (32%), Positives = 229/439 (52%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP    V + +  K  P PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRVSGPLAETVAQAVLGKTLP-PRIANYLPFKDEDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ + ++  LR+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDLLLKRILQVKGLRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+     +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINALVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   +     + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 EAKLNEIIAQLDGVRREAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL+ +   ++
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWEEIAQADHVLLMIDSTEQQ 298

Query: 313 E-----------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELI 355
                          P N+    I  K DL                  S+ T  G++ L 
Sbjct: 299 ADQFRQEWAEFLAKLPANMPVTVIRNKVDLSGEQEGLIQVDDFTMIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFLAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|90194078|gb|ABD92600.1| ThdF [Phocoenobacter uteri]
          Length = 436

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/439 (33%), Positives = 233/439 (53%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP    V + +   K   PR A+   F  +DG  +D+G+ + F +P
Sbjct: 1   TPIGRGGVGILRISGPLAETVAQEVLG-KTLKPRMANYLPFKDIDGSTIDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ + ++  LR+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQIILDILLKRILQVKGLRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKIHQLVDDVIYLRTYVEASIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
            N +  +   + +   + K G IIR G K+VI G  NAGKSSL NALA +D AIVT+I G
Sbjct: 179 ENKLNQIIASLDNVRKEAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+E AD +LL+ +     
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWGEIEQADHVLLMIDSTESS 298

Query: 313 E-----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELI 355
                          P+NI    I  K DL      +          +S+ T  G+E L 
Sbjct: 299 TENIQTEWQDFLTRLPENIPVTVIRNKVDLSGEKEGFEKLNNFDLIRLSAQTKVGVELLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASV 414
             +K  +  +         + +RHL  L +   +L        +    +++AE LR+   
Sbjct: 359 EHLKQSMGYQ-SSTEGGFIARRRHLVALEKAAEHLANGHTQLTEFYAGELLAEELRMTQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGEFTSDDLLGNIF 436


>gi|149193806|ref|ZP_01870904.1| tRNA modification GTPase TrmE [Caminibacter mediatlanticus TB-2]
 gi|149135759|gb|EDM24237.1| tRNA modification GTPase TrmE [Caminibacter mediatlanticus TB-2]
          Length = 443

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 148/445 (33%), Positives = 237/445 (53%), Gaps = 13/445 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T     AISI+R+SG +  ++ + + KK    PR A L   +  +  ++D  L
Sbjct: 2   ETIAAIATPNGVGAISIVRVSGDNALEIAKKLTKKDDFPPRVAKLCKVYDSNDELIDIAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF  HGG+ V   ILEE+ K    RLANPGEF++RA  NGKID 
Sbjct: 62  VIYFKAPNSFTGEDIVEFQCHGGVVVSKFILEEVLKHN-CRLANPGEFTKRALLNGKIDA 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++A LI + +    +L    + GELS    +  +KL  I ++ E  +D++E ED+ 
Sbjct: 121 SQAEAIAKLIETRSREGAKLLSRQLEGELSKFVEEVREKLIEIMAYSEVFIDYAE-EDLP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
               K++   +  ++  +   +   K  E I +GYK+ I+G  N GKSS+ N L  K  A
Sbjct: 180 ESLGKDIEERLKNIEALLKKTLEASKRREGILSGYKVAIVGKPNVGKSSILNKLLNKQRA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+DI GTTRD +  D+ +  +L++I DTAGIR   D +EK G++R+   ++ AD++L +
Sbjct: 240 IVSDIAGTTRDTIEEDIQIGSHLIRIIDTAGIRAAKDEIEKIGVERSKESIKKADIVLAV 299

Query: 306 KEIN-----SKKEISFPKN--IDFIFIGTKSDLYSTYTEEYDHLISSFT---GEGLEELI 355
            + +      ++ +   KN   D I +  K D        Y            E +  LI
Sbjct: 300 FDGSEFNKEDEEILDLIKNLDKDVIIVINKVDKGIKINLNYFKNFKIVKISAKEDITPLI 359

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
            K+K IL + F      I    R +  + + +  +  A    K   L++ + +++ A   
Sbjct: 360 EKLKEIL-DSFSSEDEHILISTRQISAVQKALNSIYEAKEFLKTGELELFSYHIQDAIRF 418

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           + +IT   + +++LD +FS FC+GK
Sbjct: 419 ISEITKPFEYDEMLDKMFSSFCVGK 443


>gi|162147024|ref|YP_001601485.1| tRNA modification GTPase TrmE [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209544086|ref|YP_002276315.1| tRNA modification GTPase TrmE [Gluconacetobacter diazotrophicus PAl
           5]
 gi|226704782|sp|A9HE16|MNME_GLUDA RecName: Full=tRNA modification GTPase mnmE
 gi|161785601|emb|CAP55172.1| putative tRNA modification GTPase [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209531763|gb|ACI51700.1| tRNA modification GTPase TrmE [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 435

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/444 (37%), Positives = 252/444 (56%), Gaps = 13/444 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59
           M  E+  IFA++TGA  +AI+++RL+G  C  + + +C    P PR+ASLR  +  D   
Sbjct: 1   MPTEQMPIFALATGAGRAAIAVMRLTGAGCGDMLQRLCGP-LPPPRQASLRGLWRRDAAA 59

Query: 60  ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
              +LD+ L++ FP P S+TGEDSAE H+H G AV+ G+ + L  +   R A PGEF+RR
Sbjct: 60  APVLLDRALVLWFPGPRSYTGEDSAELHLHAGPAVIAGVADALVAL-GARPAEPGEFTRR 118

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF +G++DL+EAE +ADLI +ETE QRR +++   G LS +Y  W  +L  + +  EA +
Sbjct: 119 AFAHGRLDLIEAEGIADLIDAETEAQRRQALDQADGTLSRIYDGWAARLRTLLAHQEALI 178

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF + ED+     + +L+D+  L++++ +H+  G  GE +R G    I+G  N GKSSL 
Sbjct: 179 DFPD-EDLPPGVEQALLDDLTALRSEMQAHLDDGGRGEKLRRGLVFTIVGAPNVGKSSLL 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA +D AIV+ I GTTRD + I + L    V + DTAG+RET D +E EG++R    V
Sbjct: 238 NALAGRDAAIVSAIAGTTRDAIEIRVVLGDVPVTLIDTAGLRETQDEIEAEGVRRALFHV 297

Query: 297 ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           ++AD ++ + +  +  +   P   D I +  K DL           IS   G G++ L  
Sbjct: 298 KHADCVIAMFDGETVPD-DIPA--DAIRVRNKVDLAPVPAGADAIGISVRQGTGMDALRT 354

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
            +                +  RH   + +T  +L  A         ++  E +RLA  +L
Sbjct: 355 ALAERARALTASAAGPPLTRARHRAAIEETAGHLAAALDMHW---PEMRGEEMRLAMRAL 411

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G++TG V VE LLD +F +FCIGK
Sbjct: 412 GRLTGAVGVEDLLDTVFGQFCIGK 435


>gi|91762518|ref|ZP_01264483.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718320|gb|EAS84970.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 443

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 183/443 (41%), Positives = 277/443 (62%), Gaps = 10/443 (2%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDKGL 65
           TI+A+STG   S I+I+R+SG    ++ + +   + P PR A+LR         ++D+G+
Sbjct: 2   TIYALSTGPGISGIAIVRVSGEDTKKIIKLLTNAELPKPRVATLRKINKINTSELIDEGI 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP PES+TGED AEFH+HG  AV++ +   ++K+ N RLA+PGEF++ AF+NGKI+L
Sbjct: 62  ILWFPGPESYTGEDMAEFHIHGSKAVIDALHHSISKIENCRLADPGEFTKLAFQNGKINL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           L+AES+ADLIS+ETE+QR+ +++ M+G  +  + +  +KL  I S +EA +DF +E+  +
Sbjct: 122 LKAESIADLISAETEIQRQQAIKIMNGNSADKFNELREKLLKILSHVEAKIDFPDEDLSE 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +            + N I   +   K+GE IR G+KI I+G +NAGKSSL N L+ +D A
Sbjct: 182 DILKNIKKISNEVILN-IKKILDDQKVGERIREGFKIAIIGPTNAGKSSLLNHLSNRDAA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV++I GTTRDV+ I L+++GY V +SDTAGIR++ + +EK+GIK    + ENADL L++
Sbjct: 241 IVSEIAGTTRDVIEIHLNIDGYPVVVSDTAGIRDSKNEIEKKGIKLALDKAENADLKLIV 300

Query: 306 KE---INSKKEISFPKNIDFIFIGTKSDLYST----YTEEYDHLISSFTGE-GLEELINK 357
            +   I+ K  +    +   I +  KSDL         + Y+H++ S      +E LI K
Sbjct: 301 IDAKNIDFKGVLKELMDESAILVVNKSDLLKEDLNFEIKNYEHVLISVKNNLNVEGLILK 360

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           IK+ L NKF      + +  RH  HL Q++ YL+      +    D  AE+LRLA+  LG
Sbjct: 361 IKNKLKNKFITNEDILITRARHRQHLEQSLNYLKNFEEKNEAEDFDKAAEDLRLATRHLG 420

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
            I G VDVE++L  IF+ FCIGK
Sbjct: 421 MIVGKVDVEEILGSIFNDFCIGK 443


>gi|90194100|gb|ABD92611.1| ThdF [Actinobacillus genomosp. 1]
          Length = 436

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 147/439 (33%), Positives = 239/439 (54%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRISGPLAQEVAKEVLGKEL-KPRLANYLPFKDQDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   ++    + K G I+R G K+VI G  NAGKSSL NALA +D AIVT+I G
Sbjct: 179 EGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +LL+ +   + 
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIQRAWDEIEQADHVLLMIDSTEQT 298

Query: 313 EISF-----------PKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFTGEGLEELI 355
             +F           P+NI    I  K DL   +   +E D      +S+ T  G++ L 
Sbjct: 299 AEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|193214522|ref|YP_001995721.1| tRNA modification GTPase TrmE [Chloroherpeton thalassium ATCC
           35110]
 gi|193087999|gb|ACF13274.1| tRNA modification GTPase TrmE [Chloroherpeton thalassium ATCC
           35110]
          Length = 483

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 149/463 (32%), Positives = 249/463 (53%), Gaps = 32/463 (6%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--------KKPFPRKASLRYFFGLDGR 59
           I AV+T     A+SI+R++G     V + + +K               A    F  L G 
Sbjct: 23  IAAVATPVGEGALSIVRMTGEGVLAVADKVFRKIDGDNFSFASCRSHTAHYGRFNNLAGE 82

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ + IV+ +P SFT ED  EF+ HGG+ V   +L+ L +    RLA PGEF+RRAF 
Sbjct: 83  LIDEVMAIVYRAPRSFTTEDMVEFNCHGGVIVTETVLQTLLEA-GCRLAEPGEFTRRAFL 141

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL++AE++ ++I ++T+   R ++  + G+LS   G    +L +  S +E +LDFS
Sbjct: 142 NGRIDLVQAEAVGEMIHAKTQTAYRSAISQLKGDLSLKLGSLRTELLNACSMLELELDFS 201

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV+  S + +   +  +  ++ +  +  + G+ ++ G    I+G  NAGKS+L NAL
Sbjct: 202 E-EDVEFQSREALSARLSAMATELEALANTFRFGKFVKEGVATAIVGRPNAGKSTLLNAL 260

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             K+ AIV+ +PGTTRD +     L+G   ++ DTAG+R +DD +E EGI+R++ ++  A
Sbjct: 261 LGKERAIVSHVPGTTRDYIEESFVLDGVPFRLIDTAGLRLSDDALESEGIRRSYEKITEA 320

Query: 300 DLILLLKEINSK------KEISFPKNI----DFIFIGTKSDL------YSTYTEEYDH-- 341
           DL++ + +   K       EI   +       F  +  K D       ++   +E +H  
Sbjct: 321 DLVIFVHDATEKITEAERTEILALRKKSAHAKFFIVANKIDCVTGAPNFANAPDEQEHIE 380

Query: 342 --LISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMA-SLNE 397
              IS+   EGL EL  K+K++ +   K    S + +++RH   +   +  L++A  L  
Sbjct: 381 VVPISALRREGLSELRQKMKTLATGLEKLNEGSLVITNQRHFEAIKNALERLQVARELLI 440

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +    ++IA +LR     +G I G V  + +L+ IF +FCIGK
Sbjct: 441 EGAETELIASDLREVLHQIGSIIGKVTTDDILNNIFDRFCIGK 483


>gi|157364263|ref|YP_001471030.1| tRNA modification GTPase TrmE [Thermotoga lettingae TMO]
 gi|205829181|sp|A8F732|MNME_THELT RecName: Full=tRNA modification GTPase mnmE
 gi|157314867|gb|ABV33966.1| tRNA modification GTPase TrmE [Thermotoga lettingae TMO]
          Length = 450

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 155/453 (34%), Positives = 239/453 (52%), Gaps = 23/453 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEF-ICKKKKPFPRKASLRYFFGLDGRILDKG 64
           +TI A+ST     AIS+IR+SG   +Q+C+  + +K K  PRKA   Y    DG ILD+ 
Sbjct: 3   DTIVAISTPIGTGAISVIRMSGSKSWQICQNVLLRKTKIEPRKAFHNYVKDSDGTILDEV 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I + SP S+TGED  E   HGGIAV   IL+ L      R A PGEF+RRAF NGKID
Sbjct: 63  MVIFYKSPNSYTGEDMIEIMCHGGIAVTQSILDTLI-SHGARPAEPGEFTRRAFLNGKID 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++  +I + +    +L    ++G LS +  +  + L    + IE + D+ +E   
Sbjct: 122 LTKAEAVKQIIEASSRKTVKLVAANLAGRLSEIVHKLRETLLGTLAKIEVEFDYPDEILT 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             +  ++ LND +     I   +   +   I+ +G K+VI+G  N GKS+L N L K++ 
Sbjct: 182 DPYLIEKELNDAIL---QIEEILKNAQNRLILSSGIKVVIIGKPNVGKSTLLNTLVKEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRD++ + L + G    + DTAGIR + D VEK G++R     +  +LIL 
Sbjct: 239 AIVTDIPGTTRDLIEVPLMINGISFTLIDTAGIRHSHDEVEKIGVERAIKAADEGNLILF 298

Query: 305 LKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE----------YDHLISSFTG 348
           + +       N KK +S  K   +I +  K D       E          +   IS+   
Sbjct: 299 VLDATTPVDENDKKILSLIKEKKYIVVINKIDATDLIDREELKKILGTNTHVLTISALKK 358

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAE 407
           EG++ L  +I   + +  ++      + +R   +L+   + L +     +K   LDI+A+
Sbjct: 359 EGIQRLEEEIIKSVKDLIQQTD-GYITTQRQYEYLASCRKELSDSIEAFKKKLPLDIVAQ 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++ A  S+ K+ G    + LLD IF  FC+GK
Sbjct: 418 KVKEALGSIDKLLGTDYTDDLLDRIFKDFCVGK 450


>gi|58616755|ref|YP_195954.1| tRNA modification GTPase TrmE [Ehrlichia ruminantium str. Gardel]
 gi|81311273|sp|Q5FF19|MNME_EHRRG RecName: Full=tRNA modification GTPase mnmE
 gi|58416367|emb|CAI27480.1| tRNA modification GTPase [Ehrlichia ruminantium str. Gardel]
          Length = 439

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 165/444 (37%), Positives = 252/444 (56%), Gaps = 17/444 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+ T    S +++IR+SG    +            PR A+    +     ++D+ ++
Sbjct: 3   TIFALCTPWGKSGVAVIRVSGQDAVKTFMHFKISNAIKPRVATFTPLYNAAHEVIDEVIV 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F +P SFTGED  E H HG IAV+  IL EL K+     A PGEFS RAF N K+DL 
Sbjct: 63  VYFSAPNSFTGEDVVELHTHGSIAVIRMILCELGKI--FIPAGPGEFSLRAFLNNKVDLT 120

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
            AE++ DLI++ETEMQ + ++  MSG L  LY  W  +L  + S +EA +DF E  +V +
Sbjct: 121 RAEAIVDLINAETEMQAKQAIRQMSGSLEKLYQSWRQQLIDVLSNMEAYIDFPE--EVTS 178

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
           F+ + +   +  +K  + +H++ G+ GEI+R G  + ILG  N+GKS+LFN LAK+D+AI
Sbjct: 179 FAVENISFLLDKIKESLENHLNDGRKGEILRQGIYVAILGEPNSGKSTLFNHLAKRDIAI 238

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           V++  GTTRDVL   +D+ GY + I DTAGIR+++D VE+EGI+R  L+ E+AD  +++ 
Sbjct: 239 VSEYAGTTRDVLETHIDIAGYPIVIIDTAGIRDSNDPVEQEGIRRAKLKAESADFKIIML 298

Query: 307 EINSKK----EISFPKNIDFIFIGTKSDLYST-----YTEEYDHLISSFTGEGLEELINK 357
               K     EI    +   I + +KSD   T       +     +S     G+E L++ 
Sbjct: 299 PYEKKDALNNEIIDLIDDRSICVLSKSDSIITQNLININDINFIPVSVCCNLGIEHLLSA 358

Query: 358 IKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           I+  +   FK    S   +  R   H+   V  L+  S    +  +++I+E+LRL+   L
Sbjct: 359 IQKKVEADFKFCSTSPFITSDRQRVHIQNAVNILKNISF---ELPMELISEDLRLSVREL 415

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            K+ G +  E++LD +F KFCIGK
Sbjct: 416 EKVVGVISNEEILDNVFGKFCIGK 439


>gi|296233236|ref|XP_002761925.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 2
           [Callithrix jacchus]
          Length = 471

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 166/444 (37%), Positives = 246/444 (55%), Gaps = 17/444 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     +++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGVAVIRTSGPASGHALRILTAPRDLPPARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L  L  +P LR A  GEF+RRAF +GK++
Sbjct: 95  LVLWFPGPKSFTGEDCVEFHVHGGPAVVSGVLRALGSVPGLRPAEAGEFTRRAFAHGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQANIEVRALEVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R           L 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARESCN----FLA 330

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELINKI 358
               ++  +     +   + +  KSDL ST        +      S  TGEGL+ L+  +
Sbjct: 331 TVVASAGAQSRSSSSQRLLLVLNKSDLLSTEGPGPGPDMPPHLLLSCVTGEGLDGLLEAL 390

Query: 359 KSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           K  L+           + +  RH +HL   +  L       +   L + AE LR+A   L
Sbjct: 391 KMELAAVCGDPSTGPPLLTRARHQHHLQGCLDALGHYK---QSKDLALAAEALRVARGHL 447

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            ++TG    E++LDIIF  FC+GK
Sbjct: 448 TRLTGGGGTEEILDIIFRDFCVGK 471


>gi|90194094|gb|ABD92608.1| ThdF [Actinobacillus ureae ATCC 25976]
          Length = 436

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 148/439 (33%), Positives = 239/439 (54%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRISGPLAQEVAKEVLGKEL-KPRLANYLPFKDQDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQMILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   ++    + K G I+R G K+VI G  NAGKSSL NALA +D AIVT+I G
Sbjct: 179 EGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +LL+ +   + 
Sbjct: 239 TTRDVLCEHIHIDGMPLHIIDTAGLREASDEVERIGIQRAWDEIEQADHVLLMIDSTEQT 298

Query: 313 EISF-----------PKNIDFIFIGTKSDLYSTYT--EEYD----HLISSFTGEGLEELI 355
             +F           P+NI    I  K DL S     +E D      +S+ T  G++ L 
Sbjct: 299 AEAFKTEWADFLAKLPQNIPVTVIRNKVDLSSEAEGLQELDGFTLIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|327403308|ref|YP_004344146.1| tRNA modification GTPase trmE [Fluviicola taffensis DSM 16823]
 gi|327318816|gb|AEA43308.1| tRNA modification GTPase trmE [Fluviicola taffensis DSM 16823]
          Length = 467

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 152/464 (32%), Positives = 234/464 (50%), Gaps = 32/464 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGRILDKG 64
           TI A+ST     AI++IRLSG     +   +  K         A       +DG +LD+ 
Sbjct: 6   TICALSTAPGMGAIALIRLSGKDSIDILSRVAGKSFENTPSHSAHFLRLKKVDGSVLDEV 65

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ VF    SFTGE++ E   HG + +   I+  L       LA PGEF+ RAF NG++D
Sbjct: 66  VVTVFHEGHSFTGENTVEIACHGSLFIQQEIIN-LFLASGCELAKPGEFTMRAFLNGRMD 124

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE+++DLI+SE+     ++M  M G  S+      +KL H  S +E +LDF+E EDV
Sbjct: 125 LSQAEAVSDLIASESARSHEVAMNQMRGSFSNELKDLREKLIHFASLVELELDFAE-EDV 183

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +     E+L  +  +   +   I   +LG +++NG  + I+G  N GKS+L N L  +D 
Sbjct: 184 EFADRTELLALVTEVLAYVRKLIQSFELGNVLKNGVPVAIVGAPNTGKSTLLNQLLGEDR 243

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE-GIKRTFLEVENADLIL 303
           AIV++I GTTRDV+   L+++G L ++ DTAGIRE      +  GI+R+  +++ A ++L
Sbjct: 244 AIVSNIAGTTRDVIEETLNIDGILFRLIDTAGIREEAAEEIEALGIQRSLDKIKQAKIVL 303

Query: 304 LLKEIN--------------------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
           +L + +                    + ++ +      F+ IG K DL +          
Sbjct: 304 MLSDFSGENSQSEGHLSMDSNTTGQWADEQATIHSGAHFLVIGNKYDLRADQINSPWEFQ 363

Query: 344 ------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
                 S+  G G+ EL   +   +   F     +I S+ RHL  L +T   LE A    
Sbjct: 364 TPFLPISAKNGSGIPELKAWLSQQILGSFNTQSDTIVSNARHLDALLKTQDSLEKAKWGL 423

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E +   D +A ++R A   LG ITG +  + LL  IFSKFCIGK
Sbjct: 424 ETNITADFVAMDIRQAMFWLGSITGQISEDDLLANIFSKFCIGK 467


>gi|301753859|ref|XP_002912763.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
           isoform 1 [Ailuropoda melanoleuca]
          Length = 491

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 169/460 (36%), Positives = 248/460 (53%), Gaps = 29/460 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYF-FGLDGRILDKG 64
           T+FA+S+G     I++IR SGP+       +   +  P  R A LR       G  LD+ 
Sbjct: 35  TVFALSSGQGRCGIAVIRTSGPASGHALRSLTAPQDLPPARSACLRLLSHPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W   LT   + +EA +DFSE++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRAWAKTLTKALAHVEAYIDFSEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    + V + +  L+  +S+H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLERVDSQVRELELALSAHLRDARRGQRLRSGAHVVVAGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+   +SDTAG+RE    VE+EG++R    +E ADLIL 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 334

Query: 305 LKEINSKKEISF-----------------PKNIDFIFIGTKSDLYSTYTEEYDHL----- 342
           + + +     S                    +   + +  KSDL      +         
Sbjct: 335 VLDASDLASPSSCNFLDTIVTPAGAGNPKENSQRLLLVLNKSDLLPRGGPDPSPNLPPHL 394

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLNEKDC 400
            +S  TGEGL+ L+  ++  L+          + +  RH +HL   +  L      +   
Sbjct: 395 LLSCLTGEGLDGLLEALRKELAEVCGDPSTGPLLTRARHQHHLQGCLDALGHYKQTKDLA 454

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                    RLA   LG+ITG    +++LDIIF  FC+GK
Sbjct: 455 LAAEAL---RLARGHLGRITGGGGTDEILDIIFRDFCVGK 491


>gi|294781805|ref|ZP_06747138.1| tRNA modification GTPase TrmE [Fusobacterium sp. 1_1_41FAA]
 gi|294481915|gb|EFG29683.1| tRNA modification GTPase TrmE [Fusobacterium sp. 1_1_41FAA]
          Length = 455

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 138/454 (30%), Positives = 237/454 (52%), Gaps = 21/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLDGR-IL 61
           +TI A+ST      ISI+R+SG     + E I + K       +  S+ Y   +D   I+
Sbjct: 4   DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRAKNKKVSELKNYSINYGHIIDNEHIV 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +  +P ++T ED  E + HGG  V   +L+ + K    R+A  GEF++RAF NG
Sbjct: 64  DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEQVLQVVLK-NGARIAEIGEFTKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+  + G+L          +  + + I   LD+ E 
Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPE- 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E + +   + +++++     +I   IS    G+II++G K  I+G  N GKSS+ N+L +
Sbjct: 182 EGIDDPVPENLVDNLKKASAEIKDLISSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVT IPGTTRD++   +++    + + DTAGIR TDDIVE  G++++   + +ADL
Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININSIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301

Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGE 349
           IL + + + + +               I I  K D+            +    IS+ +  
Sbjct: 302 ILYVIDTSREIDEEDFRIYEIINTDKVIGILNKIDIKKEIDLSKFSKIDKWIEISALSKI 361

Query: 350 GLEELINKIKSILSNKFKKLPF--SIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIA 406
           G++ L ++I   + N+  +      + ++ RH   L +T    L +    +    +D++A
Sbjct: 362 GIDNLEDQIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEALLNIIETIDMGLPMDLMA 421

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++ A  SL ++TG +  E LL+ IFS FC+GK
Sbjct: 422 VDIKDALDSLSEVTGEISSEDLLNHIFSNFCVGK 455


>gi|58865408|ref|NP_001011919.1| tRNA modification GTPase GTPBP3, mitochondrial precursor [Rattus
           norvegicus]
 gi|81883253|sp|Q5PQQ1|GTPB3_RAT RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial;
           AltName: Full=GTP-binding protein 3; Flags: Precursor
 gi|56268874|gb|AAH87083.1| GTP binding protein 3 (mitochondrial) [Rattus norvegicus]
          Length = 492

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/461 (37%), Positives = 252/461 (54%), Gaps = 30/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64
           TIFA+S+G    AI++IR SGP+       +   ++P P R A LR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALREPPPARSACLRLLRHPCSGEPLDRS 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  E HVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCMELHVHGGPAVVSGVLQALGSVPGLRPAKAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GELS L   W   LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++V  D+  L+  +SSH+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQVDRDVRALEVALSSHLRDARRGQRLRSGANVVVAGPPNAGKSSLVNLLSQKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRD+L   +DL G+ V +SDTAG+RE    VE+EG++R    +E AD+IL 
Sbjct: 275 SIVSPEPGTTRDILETPVDLAGFPVLLSDTAGLREGAGAVEQEGVRRARQRLEQADIILG 334

Query: 305 LKEINSKKEI---SFPKNIDFIFIGTKSD--------------------LYSTYTEEYDH 341
           + + +        SF   +    +    D                      S+       
Sbjct: 335 MLDASDLASSSSCSFLDTVVAPLVAQSHDSGRQRLLLLLNKSDLLSANAPASSTALPPHL 394

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKD 399
           L+S  TG G++ L+  +K+ L+           + +  RH YHL   +  L    L    
Sbjct: 395 LLSCHTGAGMDALLQALKTELAAVCGDPSTGPPLLTRARHQYHLQGCLDALGRFQLT--- 451

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + AE LR A   L  +TG    E++LD+IF  FC+GK
Sbjct: 452 TDLALAAEALRQARRQLSHLTGGGGTEEILDLIFQDFCVGK 492


>gi|90194084|gb|ABD92603.1| ThdF [Bibersteinia trehalosi]
          Length = 436

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/439 (33%), Positives = 232/439 (52%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   +V + +   K   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRISGPLAEKVAQEVLG-KTLKPRMANYLPFKDQDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ + K+  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQIILDLLLQRILKIEGIRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   +     + K G I+R G K+VI G+ NAGKSSL NALA ++ AIVTDI G
Sbjct: 179 EAKLNEIIAQLDGVRKEAKQGSILREGMKVVIAGNPNAGKSSLLNALAGREAAIVTDIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--- 309
           TTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+  AD +LL+ +     
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIGQADHVLLMIDSTLSA 298

Query: 310 --------SKKEISFPKNIDFIFIGTKSDL--YSTYTEEYDHLI----SSFTGEGLEELI 355
                   +      P  +    I  K DL       E+ D+      S+ T  G+E L 
Sbjct: 299 ADQFQQEWADFLAKLPVKMPVTVIRNKVDLSGEQEGVEQQDNFTLIRLSAQTKVGVELLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE            +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFIARRRHLVALETAAEHLERGHTQLTQFMAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|325955496|ref|YP_004239156.1| tRNA modification GTPase mnmE [Weeksella virosa DSM 16922]
 gi|323438114|gb|ADX68578.1| tRNA modification GTPase mnmE [Weeksella virosa DSM 16922]
          Length = 463

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 150/463 (32%), Positives = 238/463 (51%), Gaps = 30/463 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-----KASLRYFFGLDGR 59
            +TI A++T     AI++IR+SGP   +    + + K            ++   + +D  
Sbjct: 4   NDTICALATANGMGAIAVIRVSGPEAIEKVNTLFRSKFGEKSLLEVDSHTVHLGYFIDEE 63

Query: 60  I-LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ L  VF  P S+TGED  E   HG + +   +LE L K   +R ANPGE++ RAF
Sbjct: 64  VLIDEALFTVFRGPNSYTGEDVVEISTHGSMYIQQKVLEVLNK-NGIRNANPGEYTFRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S+++    ++M+ M G  S+      +++ +  + IE +LDF
Sbjct: 123 WNGKMDLTQAEAVADLIASDSKASHEIAMKQMRGGFSNQIKDLREQIVNFAALIELELDF 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           SE EDV+     ++   +  L+  +         G +I+NG  + I+G  NAGKS+L NA
Sbjct: 183 SE-EDVEFADRTKLYALLDELQEVLKRLSDSFVYGNVIKNGVPVAIVGAPNAGKSTLLNA 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIV+D+ GTTRD +   L + G   +  DTAGIRE  D +E+ GI++TF +++ 
Sbjct: 242 LLNEERAIVSDVEGTTRDTIEEVLYINGIGFRFIDTAGIREAGDKIEQIGIEKTFEKIDK 301

Query: 299 ADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS-----------TYTEEY 339
           A ++L L + N        ++ E    K      I  K D+ S            + E  
Sbjct: 302 ASIVLYLYDSNIMADNQIANQLEALISKGKIVFNIANKIDIESDRDVIPQAIKDEFKEVI 361

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
              IS+     +E L  K+   +         +I S+ RHL  L +T+  +       +D
Sbjct: 362 HLEISAKEKYNIETLKEKLFDQV-QLLNNTDDTIVSNSRHLDALQKTLAQVHKIRQGMQD 420

Query: 400 -CGLDIIAENLRLASVSLGKITGCVDV-EQLLDIIFSKFCIGK 440
               D++A +LR     LG ITG +DV E +L  IF KFCIGK
Sbjct: 421 GIPTDLLAMDLREGLDYLGAITGEIDVDEDILGTIFGKFCIGK 463


>gi|257067216|ref|YP_003153472.1| tRNA modification GTPase TrmE [Anaerococcus prevotii DSM 20548]
 gi|256799096|gb|ACV29751.1| tRNA modification GTPase TrmE [Anaerococcus prevotii DSM 20548]
          Length = 452

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 139/454 (30%), Positives = 231/454 (50%), Gaps = 20/454 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-------KKPFPRKASLRYFFGL 56
           E+ TI A+ST +    ISI+R+SG   F +   +          K    RK         
Sbjct: 2   EERTIAAISTPSGTGGISIVRMSGSKSFDIISRVFSPINGKELDKDKDNRKMRYGVIKDR 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G  +D+ ++     P ++T ED  E + HG    V  IL  L       +A  GEF++R
Sbjct: 62  KGETIDEVMVCFMKGPFTYTREDICEINCHGSFVSVKKILN-LLLDEGCDMAEGGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ D+I+S  ++ ++ S+  + G +          L    S +E  +
Sbjct: 121 AFLNGRIDLSQAEAVLDIINSTNDLSQKESIHQLQGSVKEKISSIRQDLLDALSRLEYSI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +F+E  D ++ S  E+++ +   K  I   ++    G+I+R+G    I+G  N GKSSL 
Sbjct: 181 NFTE--DGEDLSPDEIISYMEKAKATIDKLLNTSNKGKILRDGINTTIIGKPNVGKSSLL 238

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N + K++ AIVTD+PGTTRD++T  +    + +KI+DTAGIRETDD+VEK G+ ++   +
Sbjct: 239 NKMLKENRAIVTDVPGTTRDLITEYISFGDFTLKINDTAGIRETDDLVEKIGVDKSIELI 298

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---HLISSFT 347
           + +DLI+ + + +       +K I   K  + I I  K+DL   +  ++D      S   
Sbjct: 299 DESDLIIAIFDTSRPFDKEDEKIIDLIKGRNAIIILNKADLEDKFFHDFDQVTIKTSMAQ 358

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIA 406
            EG+++L   I  + + K  K    + ++ RH   L +    L E     ++   LD   
Sbjct: 359 DEGIDKLEEAITEMFNTKDIKRESVLITNTRHERLLKEASNKLSESLVDIKRGIPLDACE 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LR A   LG I G    ++++D +F +FC+GK
Sbjct: 419 VDLRGAYDDLGFIIGEAVSDEIMDKVFKEFCVGK 452


>gi|237713435|ref|ZP_04543916.1| tRNA modification GTPase TrmE [Bacteroides sp. D1]
 gi|262407222|ref|ZP_06083770.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_22]
 gi|294647342|ref|ZP_06724935.1| tRNA modification GTPase TrmE [Bacteroides ovatus SD CC 2a]
 gi|294809037|ref|ZP_06767759.1| tRNA modification GTPase TrmE [Bacteroides xylanisolvens SD CC 1b]
 gi|229446417|gb|EEO52208.1| tRNA modification GTPase TrmE [Bacteroides sp. D1]
 gi|262354030|gb|EEZ03122.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_22]
 gi|292637301|gb|EFF55726.1| tRNA modification GTPase TrmE [Bacteroides ovatus SD CC 2a]
 gi|294443762|gb|EFG12507.1| tRNA modification GTPase TrmE [Bacteroides xylanisolvens SD CC 1b]
          Length = 465

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 149/470 (31%), Positives = 235/470 (50%), Gaps = 35/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP    +   I K  K        +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGSIRVSGPEAISITGSIFKPAKTGKLLSEQKPYTLTFGRI 57

Query: 56  LDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            DG  I+D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE++
Sbjct: 58  YDGDEIIDEVLISLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL+M  M G  S    +  +KL +  S IE 
Sbjct: 117 QRAFLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTELRNKLLNFTSMIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFSE EDV+      +      ++  IS       +G  I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSE-EDVEFADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKST 235

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV+D+ GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF 
Sbjct: 236 LLNVLLNEDKAIVSDVHGTTRDVIEDTINIGGITFRFIDTAGIRETNDTIESLGIERTFQ 295

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY------ 339
           +++ A+++L + +           S+K I   +    I +  K+DL     +E       
Sbjct: 296 KLDQAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENLLSLLK 355

Query: 340 --------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                      IS+   E   EL   +              I ++ RH   L++ +  + 
Sbjct: 356 DFPKESTESIFISAKQRENTSELQKMLIDAAHMPTVTQNDIIVTNVRHYEALNKALEAIH 415

Query: 392 MASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 +     D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 416 RVQNGLDSQISGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|254436182|ref|ZP_05049689.1| tRNA modification GTPase TrmE [Nitrosococcus oceani AFC27]
 gi|207089293|gb|EDZ66565.1| tRNA modification GTPase TrmE [Nitrosococcus oceani AFC27]
          Length = 431

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 157/434 (36%), Positives = 247/434 (56%), Gaps = 18/434 (4%)

Query: 21  SIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDS 80
            I+R+SGP C Q+ E +  +  P PR A+  +F    G ILD+GL++ FP P SFTGED 
Sbjct: 2   GIVRVSGPFCRQIAEQVTGRVPP-PRYATFCHFRNRYGEILDQGLILYFPGPHSFTGEDV 60

Query: 81  AEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETE 140
            E   HGG A+++ +L  + ++  +RLA PGEFS RAF N KIDL +AE++ADLI S +E
Sbjct: 61  LELQGHGGPAIMDWLLSSVLQL-GVRLARPGEFSERAFLNNKIDLAQAEAIADLIESASE 119

Query: 141 MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
              R ++  + GE S+      ++LT +R  +EA++DFS+ ED+       V   +  ++
Sbjct: 120 QAARSALRSLHGEFSAQIQTLREQLTELRCVVEANIDFSD-EDIDFIERGMVAERLKEIQ 178

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + S     + G ++R G ++V+ G  N GKSSL N LA  + AIVTD+PGTTRD+L  
Sbjct: 179 STLQSIHRSARQGALLREGVRVVLAGRPNVGKSSLHNRLAGFEAAIVTDVPGTTRDLLRE 238

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI- 314
           ++ ++G  + +SDTAG+  + D +E+EG++RT  E+ +AD +LL+ +       +++ I 
Sbjct: 239 NITIDGLPIHLSDTAGLHNSKDTIEQEGMRRTREELIHADHVLLVADDQSGLTEAEQAIL 298

Query: 315 -SFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELINKIKSILSNKFK 367
              P ++ +  I  K DL       ++ L       S+ TG G++ L  ++K       +
Sbjct: 299 DELPDDVTYTLIFNKIDLSGAPAGRWEELQGIALRLSALTGAGMDLLCQRLKECAGFD-R 357

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDIIAENLRLASVSLGKITGCVDVE 426
           +      + +RHL  L +    + +A     D G  +I+AE LR A  +L +ITG    +
Sbjct: 358 ESEGCFSARRRHLEALQRAGAAVVVARKILGDKGAEEILAEELRQAQNALAEITGEYRSD 417

Query: 427 QLLDIIFSKFCIGK 440
            LL  IFS FCIGK
Sbjct: 418 DLLGEIFSTFCIGK 431


>gi|83649688|ref|YP_438123.1| tRNA modification GTPase TrmE [Hahella chejuensis KCTC 2396]
 gi|123529917|sp|Q2S6M6|MNME_HAHCH RecName: Full=tRNA modification GTPase mnmE
 gi|83637731|gb|ABC33698.1| tRNA modification GTPase TrmE [Hahella chejuensis KCTC 2396]
          Length = 454

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/469 (33%), Positives = 243/469 (51%), Gaps = 44/469 (9%)

Query: 1   MNHEKETIFAVSTGALPS-----------AISIIRLSGPSCFQVCEFICKKKKPFPRKAS 49
           M  E +TI A++T                A +I         +V         P PR A 
Sbjct: 1   MYAENDTIVAIATPPGKGGVGVVRVSGPKARAI-------AHEVL-----GYDPKPRHAH 48

Query: 50  LRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109
              FF  +G  LD G+ ++F +P SFTGED  EF  HGG  V++ +++ +  +   RLA 
Sbjct: 49  YSPFFNEEGDTLDSGIALLFIAPNSFTGEDVVEFQGHGGPVVLDILVKRIVSL-GARLAR 107

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEFS RAF N K+DL++AE++ADLI + +E     +M  + G+ S      I+ L  +R
Sbjct: 108 PGEFSERAFMNDKLDLVQAEAIADLIEATSEQAAHSAMRSLQGQFSKEIENLIESLIQLR 167

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
            ++EA +DF E E++   S  +VLND+  L +   S  +  K G ++R G  +VI G  N
Sbjct: 168 IYVEAAIDFPE-EEIDFLSDGKVLNDLDTLLSQTQSVFASAKQGALMREGMTVVIAGRPN 226

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
           AGKSSL NALA ++ AIVT+I GTTRDVL   + ++G  + I DTAG+R++DD+VEK GI
Sbjct: 227 AGKSSLLNALAGRESAIVTEIEGTTRDVLREHIHIDGMPLHIVDTAGLRDSDDVVEKIGI 286

Query: 290 KRTFLEVENADLILLLKEINSKKEISFPKNID-----------FIFIGTKSDLYSTYTE- 337
           +R + E++ AD IL L +     E+S  +                 +  K DL       
Sbjct: 287 ERAWKEIDQADRILFLVDATQTNEVSPERIWPEFYARIEHHDHITVVRNKIDLSEEAQGI 346

Query: 338 -----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
                     +S+  G G++ L   +K+ +  +         + +RHL  L+   +++++
Sbjct: 347 DLSLSHPVIRLSAKAGNGIDVLREHLKACVGFE-SHAEGGFMARRRHLEALTVAEKHIQL 405

Query: 393 ASLNEKDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A          +++AE+LR+A  +L +ITG    + LL  IFS FCIGK
Sbjct: 406 AKQQLLSANAGELVAEDLRVAQNALSEITGAFTSDDLLGRIFSSFCIGK 454


>gi|237722682|ref|ZP_04553163.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_2_4]
 gi|229448492|gb|EEO54283.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_2_4]
          Length = 465

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 148/470 (31%), Positives = 235/470 (50%), Gaps = 35/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP    +   I K  K        +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGSIRVSGPEAISITGSIFKPAKTGKLLSEQKPYTLTFGRI 57

Query: 56  LDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            DG  I+D+ L+ +F +P S+TGEDS E   HG   ++  +++ L +    R+A PGE++
Sbjct: 58  YDGDEIIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIE-NGCRMAQPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL+M  M G  S    +  +KL +  S IE 
Sbjct: 117 QRAFLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSRELTELRNKLLNFTSMIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFSE EDV+      +      ++  IS       +G  I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSE-EDVEFADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKST 235

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV+D+ GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF 
Sbjct: 236 LLNVLLNEDKAIVSDVHGTTRDVIEDTINIGGITFRFIDTAGIRETNDTIESLGIERTFQ 295

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY------ 339
           +++ A+++L + +           S+K I   +    I +  K+DL     +E       
Sbjct: 296 KLDQAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENLLSLLK 355

Query: 340 --------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                      IS+   E   EL   +              I ++ RH   L++ +  + 
Sbjct: 356 DFPKESTESIFISAKQRENTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIH 415

Query: 392 MASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 +     D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 416 RVQSGLDSQISGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|294341965|emb|CAZ90394.1| tRNA modification GTPase trmE [Thiomonas sp. 3As]
          Length = 472

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/472 (33%), Positives = 250/472 (52%), Gaps = 35/472 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + + I A++T     A+ I+R SG S   + + I  +    PR A+   F    G +
Sbjct: 4   LAQDADPIVAIATAPGRGAVGIVRASGKSLGALAQAITGRVL-LPRHATYLPFGDGQGGV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRA 117
           +D+GL + FP+P S+TGED  E  +HGG  V+  +L  L ++     LR+A PGEF+RRA
Sbjct: 63  IDRGLALFFPAPHSYTGEDVLELQIHGGPVVLQLLLARLLELGASSRLRVAQPGEFTRRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL +AES+ADLI + TE   R +   ++GELS        +L  +R  +EA LD
Sbjct: 123 FLNGKLDLAQAESVADLIEASTEAAARSATRALAGELSQAVRALAAELVELRLLVEATLD 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E ED+      +    +  L+  +    ++ + G ++R G ++V+ G  N GKSSL N
Sbjct: 183 FPE-EDIDFLRQAQAQRRLQALQQTLQQVQAKTRQGALLREGLQVVLAGQPNVGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           ALA  ++AIVT I GTTRD ++  + +EG  + I DTAG+R++ D VE+ G++R++  + 
Sbjct: 242 ALAGAELAIVTPIAGTTRDKVSQTIQIEGVPLHIVDTAGLRDSADAVERIGVERSWHAIA 301

Query: 298 NADLILLLKEIN---------SKKEIS--FPKNIDFIFIGTKSDLYSTYTEEY------- 339
            AD+++ L ++          ++ EI+   PK    + +  K D   T  +         
Sbjct: 302 GADVVVFLHDLTRLQAPGYAQAEAEIARGLPKGAPLLHVFNKRDCVETGAQARLLPQVWA 361

Query: 340 --------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                      IS+ TG+GL+EL  K+  +   +         + +RH+  L QT ++L 
Sbjct: 362 QWGVEAGESVWISAATGDGLQELRLKLLQLAGAQPTS-EGVFIARQRHVQALEQTGQHLG 420

Query: 392 MA---SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A      +    LD++AE LRL+  +L  ITG    + LL  IFS FCIGK
Sbjct: 421 AALHLIELDAQAPLDLLAEELRLSHQALMAITGEYTPDDLLGAIFSSFCIGK 472


>gi|289662289|ref|ZP_06483870.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 446

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 240/449 (53%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +    +  PR A    F    G +
Sbjct: 1   MSSSSSTIVAIASAAGIGGVGIVRLSGPQSVQIAAQL-GIARLQPRHAHYARFRDAQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  VDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       D LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSRRVDAVADTLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E +      +V + +   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 -EPLDTLGGNQVRDGLTQARTLLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+RE  D +E+EG++R   E+E AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDAIEREGMRRARAELERAD 297

Query: 301 LILLLKEINSKKEISFPKNIDFI------FIGTKSDLYSTY--TEEYDHLISSFTGEGLE 352
           L L++ +    +                 +I  K DL S     +    ++S+ TG+GLE
Sbjct: 298 LALVVLDARDPQAAREAIGDAIDAVPRQLWIHNKCDLLSDAVPLDANAIVVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++ + L +  + +     +  RH+  L +  +++++A L      L++ AE LRL
Sbjct: 358 QLHIRLRELALGDGVESVDGEFSARTRHVEALRRAEQHVDIADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKISADDLLGKIFSSFCIGK 446


>gi|315650200|ref|ZP_07903275.1| tRNA modification GTPase TrmE [Eubacterium saburreum DSM 3986]
 gi|315487557|gb|EFU77865.1| tRNA modification GTPase TrmE [Eubacterium saburreum DSM 3986]
          Length = 456

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 155/457 (33%), Positives = 243/457 (53%), Gaps = 21/457 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGR 59
            + +TI A++T    S I I+R+SG     + + I    K      S    +G       
Sbjct: 2   KKTDTIAAIATALGESGIGIVRISGEDAIGIADKIYSGNKSLREVNSHTINYGHVYFGDE 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L+++  +P +FTGED+ E + HGGI ++  +L  +      R+A PGEF++RAF 
Sbjct: 62  IIDEVLVMLMKAPRTFTGEDTVEINCHGGILILEKVLHAVLSC-GARMALPGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ D+I ++ ++  +  +  +SG L+    +   K+    +FIEA LD  
Sbjct: 121 NGKMDLSQAEAVIDIIEAKNDLALKAGIRQLSGALTESIKKIRAKILEQIAFIEAALDDP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +  +S  ++   +  L   I       K G IIR G   VI+G  NAGKSS+ N L
Sbjct: 181 EHYSLDGYS-AKLKKIVKKLLGGIEYLQKSFKEGSIIREGINTVIIGKPNAGKSSILNLL 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           ++ D AIVTDI GTTRD LT ++ L G  + I+DTAGIRETDD+VE  G+K+      NA
Sbjct: 240 SRTDRAIVTDIAGTTRDTLTENIKLSGISLNITDTAGIRETDDVVESIGVKKAIEASNNA 299

Query: 300 DLILLLKE---INSKKEISF---PKNIDFIFIGTKSDL--------YSTYTEEYDHLISS 345
           DL L++ +       ++IS     K+   I +  KSD            Y+++   + S+
Sbjct: 300 DLNLVVIDGLLPLDSEDISLFESVKDKQAIILINKSDKELKVSVDDIRKYSDKDVIIFSA 359

Query: 346 FTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDCGLD 403
               GL+EL N IKS  +SN+       I ++ RH   +++ +  L+M  S  E+    D
Sbjct: 360 KDNTGLDELENMIKSKFISNEINFNDQIIITNIRHQEIINEAMESLDMCLSSIEEGYEED 419

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +L  A  +LG+I G    + +++ IFSKFC+GK
Sbjct: 420 FFTIDLLNAYEALGEIIGETVDDDVVNEIFSKFCMGK 456


>gi|298528962|ref|ZP_07016365.1| tRNA modification GTPase TrmE [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510398|gb|EFI34301.1| tRNA modification GTPase TrmE [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 466

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 139/455 (30%), Positives = 224/455 (49%), Gaps = 23/455 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGRILD 62
           TI A++T      + I+RLSGP    + E +      F    + +  +G     + +ILD
Sbjct: 14  TIAAIATPMGQGGVGIVRLSGPQSLDIAEKLFVPGPRFKGFKAYKLHYGWIKNRNQQILD 73

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LL   P+P S+T ED  E + HGG AV+ G+LE L  +     A PGEF++RAF N +
Sbjct: 74  EVLLAYMPAPYSYTREDVVEINCHGGPAVLEGVLEALYHL-GAEPAAPGEFTKRAFLNNR 132

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE+  ++I++ T+    L+ + + G L        D L  ++  +   +DF E E
Sbjct: 133 MDLTQAEAALEMINAPTQDGALLARDKLQGHLKERVDSLRDSLEKLKQELCLAVDFPE-E 191

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D++     ++         +I   +   +   + R G  +V+ G  NAGKSSL NAL  +
Sbjct: 192 DLECLPLADLAQRTNSAVREIDQLLKAFEQNRVFREGALVVLAGRVNAGKSSLMNALLGR 251

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT IPGTTRD L   ++L+G  V++ DTAG R T D +E  G++     +  +DL 
Sbjct: 252 ERAIVTSIPGTTRDYLEEAINLDGLPVRLVDTAGRRPTRDKIEMMGLETGRQLISRSDLC 311

Query: 303 LLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYT--------EEYDHLISSFT- 347
           +L+ +     + +++   + I     +    K DL S           +  D + +S T 
Sbjct: 312 ILVLDAGQEPAPEDLDILEEISPGKLVLAVNKQDLVSGTPGWVQDLKDKGLDLVHTSATL 371

Query: 348 GEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDCGLDII 405
           G GLE L   I+S IL  K  +   S+  + R    L +     L +A    ++   D++
Sbjct: 372 GHGLENLTRAIRSRILGEKRPQATSSLAPNLRQKTALDKARQELLLLADEARQEMPYDVL 431

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              L  A   L +ITG +  + +L+ IF  FCIGK
Sbjct: 432 GVRLDYACTFLDEITGRIVTDDILNSIFENFCIGK 466


>gi|260887478|ref|ZP_05898741.1| tRNA modification GTPase TrmE [Selenomonas sputigena ATCC 35185]
 gi|330840116|ref|YP_004414696.1| tRNA modification GTPase mnmE [Selenomonas sputigena ATCC 35185]
 gi|260862765|gb|EEX77265.1| tRNA modification GTPase TrmE [Selenomonas sputigena ATCC 35185]
 gi|329747880|gb|AEC01237.1| tRNA modification GTPase mnmE [Selenomonas sputigena ATCC 35185]
          Length = 459

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 141/460 (30%), Positives = 228/460 (49%), Gaps = 24/460 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC------KKKKPFPRKASLRYFFGL 56
            + +TI A++T      + I+RLSG S  +    +       K      R          
Sbjct: 2   QQADTISAIATAVGEGGVGIVRLSGASAIETASRMFCAAGARKLADAGARDLLYGTVVRE 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           DGR++D+ L +V  +P S+T ED  E   HGG   +  +L  L      R A  GEF++R
Sbjct: 62  DGRLVDEALCLVMRAPHSYTKEDVVELQCHGGAVSLREVL-ALTYRHGARAAERGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL EA+++ D++ ++TE    ++   ++G  S       + +  + + +EA +
Sbjct: 121 AFLNGRLDLAEAQAVMDVVQAKTEKGLEMAAGHLAGHFSERIRSMREDILALLAHLEAVI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF E E V     +E    +  L   +   +     G I+R+G +  I+G  N GKSSL 
Sbjct: 181 DFPE-EGVDEIVVEEAREKVSALHASLRRIVQTAHTGRILRDGLETAIVGRPNVGKSSLL 239

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL ++D AIVTD+PGTTRD +    D+ G  ++I DTAGIR T+D VE+ G+++    V
Sbjct: 240 NALLREDRAIVTDVPGTTRDTIEEYADIGGVPLRIIDTAGIRTTEDAVERIGVEKARAHV 299

Query: 297 ENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHL 342
           ++A L+L L +         ++ ++  +  D + + TKSDL      E            
Sbjct: 300 KSAALVLALFDGSRPLEAEDEEILALLEGKDALIVVTKSDLPRVLDTERLQNLVHLPLIE 359

Query: 343 ISSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
           I++   EG+  L   I   + +  ++    S  +  R    L     +L  A S  ++  
Sbjct: 360 ITTKEEEGISPLAAAILEKVYDGEERSGEGSFVADLRTKNLLEAAADHLTAAISTMDQGL 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           GLD I+ +LR +   LG+ITG    + +LD IFS+FC+GK
Sbjct: 420 GLDFISIDLRSSLEKLGEITGETVGDDVLDEIFSRFCVGK 459


>gi|197106988|ref|YP_002132365.1| thiophene and furan oxidation protein ThdF [Phenylobacterium
           zucineum HLK1]
 gi|254811489|sp|B4RD04|MNME_PHEZH RecName: Full=tRNA modification GTPase mnmE
 gi|196480408|gb|ACG79936.1| thiophene and furan oxidation protein ThdF [Phenylobacterium
           zucineum HLK1]
          Length = 445

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 170/449 (37%), Positives = 252/449 (56%), Gaps = 18/449 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TIFA +T    +A++++R+SGP        +     P PR+AS+R  F  DG  +D+ 
Sbjct: 2   SDTIFAPATAPGRAAVAVVRVSGPRTQTAVRTLAG-DLPEPRRASVRRLFDADGGEIDQA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P S+TGED+AEFHVHGG AV   ++E LA +  LRLA PGEF+RRAFENGK+D
Sbjct: 61  LVLWFPGPGSYTGEDAAEFHVHGGTAVTGALVEALAGL-GLRLAEPGEFTRRAFENGKLD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE +ADLI SETE QRR ++E + G LS +  +W + LT   +  EA +DF + E+V
Sbjct: 120 LAQAEGVADLIDSETEGQRRQALEQLGGRLSQVQARWREALTEALALFEAAVDFPD-EEV 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               +      +  L  +I +  +    GE +R G++I ++G  NAGKS+L NALA ++ 
Sbjct: 179 PADVAARARPVLETLAAEIEAAAADAARGERVREGFRIALVGAPNAGKSTLLNALAGREA 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT  PGTTRDV+ + + L GY V ++DTAG+R+T D +E EG++R     E ADL L 
Sbjct: 239 AIVTATPGTTRDVIEVPMVLAGYKVLMADTAGLRDTADEIEAEGVRRARAWAEGADLRLW 298

Query: 305 LKEINSKKEISFPK--NIDFIFIGTKSDL--------YSTYTEEYDHLISSFTGEG---L 351
           L + +S++    P       + + TK DL         +          +  T  G   +
Sbjct: 299 LVDGSSEETPDLPAEIGEGDLCLITKRDLPVGNAGAWAAEVARRIGIPAAEVTARGPGDM 358

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
             L   +   +            +  RH   L++    L  A     D  +++ AE++RL
Sbjct: 359 AWLKETLSERVVESLGGGEPPAATRLRHRELLAEASERLRHA--IGHDEHVELAAEDVRL 416

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A+ +L +ITG +D E +L  IF+ FCIGK
Sbjct: 417 AARALDRITGRIDPEAVLGRIFATFCIGK 445


>gi|299143471|ref|ZP_07036551.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298517956|gb|EFI41695.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 458

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 149/458 (32%), Positives = 246/458 (53%), Gaps = 26/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLDGR 59
           +TI A+ST    + I I+R+SG +  ++   I              R     + +  D +
Sbjct: 4   DTISAISTATGEAGIGIVRMSGENSIEIANSIFVPMGSKTLIESDNRTMVYGHIYDND-K 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ L++    P ++T E+  E + HGGI  V  IL+ L      RLA PGEF++RAF 
Sbjct: 63  LIDEVLIVKMLMPHTYTRENVVEIYCHGGIISVRRILD-LTLDRGARLAEPGEFTKRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++ D+I S++++   +S+  + G LS       +++  + + I A++DF 
Sbjct: 122 NGRLDLAQAEAVIDIIKSKSDISYNMSLRQLEGSLSGRIADIRERVMKMTALIVANIDFP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+E V+  +   +  D + +   ++  I     G+++R+G   VILG  N GKSSL N L
Sbjct: 182 EDEIVE-ATYSSLREDAVHVVESLNELIKNSNRGKLLRDGINTVILGKPNVGKSSLLNGL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            + + AIVTDIPGTTRDV+T  ++L+G L+KI+DTAGIR+TDD VE+ G+      ++ +
Sbjct: 241 LRDERAIVTDIPGTTRDVITDFVNLDGILLKITDTAGIRDTDDTVERIGVDLAKKSIDGS 300

Query: 300 DLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLISS 345
           DLI+ + + +   +      I    N   I +  KSDL             ++ D+L  S
Sbjct: 301 DLIIAIFDTSRPFDNDDYEIIRLIGNKKSIILLNKSDLDKKVSKDDIEDLVKDRDYLDIS 360

Query: 346 FTGEG-LEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLE-MASLNEKDCGL 402
             GEG +  +  KIK +  +   K   +   ++ RH+  L      ++ + +  E +  L
Sbjct: 361 VVGEGEILRIEEKIKEMFFDGEVKENSTLYVNNLRHIRALKAAKESMKYVLNDIENEMFL 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  NL     SLG+ITG    E +LD +FS+FCIGK
Sbjct: 421 DLLEVNLEDVLSSLGEITGETSTEDVLDKVFSEFCIGK 458


>gi|90194110|gb|ABD92616.1| ThdF [Actinobacillus pleuropneumoniae serovar 1]
          Length = 436

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 147/439 (33%), Positives = 240/439 (54%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRISGPLAQEVAKEVLGKEL-KPRLANYLPFKEQDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   ++    + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 EGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+RE +D VEK GI+R + E+E AD +LL+ +   + 
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREANDEVEKIGIQRAWDEIEQADHVLLMIDSTEQT 298

Query: 313 EISF-----------PKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFTGEGLEELI 355
             +F           P+NI    I  K DL   +   +E D      +S+ T  G++ L 
Sbjct: 299 AEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|260171369|ref|ZP_05757781.1| tRNA modification GTPase TrmE [Bacteroides sp. D2]
 gi|315919680|ref|ZP_07915920.1| tRNA modification GTPase TrmE [Bacteroides sp. D2]
 gi|313693555|gb|EFS30390.1| tRNA modification GTPase TrmE [Bacteroides sp. D2]
          Length = 465

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 146/466 (31%), Positives = 232/466 (49%), Gaps = 33/466 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFPRKASLRYFFGLDG- 58
           ++TI A++T     AI  IR+SGP    +   I K  K        +  +L +    DG 
Sbjct: 3   QDTICAIATAQG-GAIGSIRVSGPEAISITGSIFKPAKTGKLLSEQKPYTLTFGRIYDGD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EMIDEVLVSLFRAPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAKPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           SE EDV+      +      ++  IS       +G  I+NG  + I+G +NAGKS+L N 
Sbjct: 181 SE-EDVEFADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLNV 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++ 
Sbjct: 240 LLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLDQ 299

Query: 299 ADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY---------- 339
           A+++L + +           S+K I   +    I +  K+DL     +E           
Sbjct: 300 AEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENLLSLLKDFPK 359

Query: 340 ----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                  IS+   +   EL   +              I ++ RH   L++ +  +     
Sbjct: 360 ESTESIFISAKQRKNTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQN 419

Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +     D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 420 GLDSQISGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|257095986|ref|YP_003169627.1| tRNA modification GTPase TrmE [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048510|gb|ACV37698.1| tRNA modification GTPase TrmE [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 458

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 155/439 (35%), Positives = 254/439 (57%), Gaps = 20/439 (4%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPES 74
                I +IR++G S  +  E +  ++ P  R+A+L  F   D  ++D GLL+ FP+P S
Sbjct: 27  PGRGGIGVIRVAGASLLEFAEALSGRR-PLARRATLCEFRAADHVVIDTGLLLYFPAPHS 85

Query: 75  FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134
           FTG+D  E H HGG  V+  +L    ++   RLA+PGEF+RRA+ NGK+DL +AE++ DL
Sbjct: 86  FTGDDVLELHGHGGPVVMQMLLVRCLEL-GARLADPGEFTRRAYLNGKLDLAQAEAVIDL 144

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           I + T    R ++  + GE S      +D+L  +R+ +EA LDF + EDV    + +   
Sbjct: 145 IDAATAAAARSAVRSLQGEFSGEVRVLLDQLIELRALVEATLDFPD-EDVDFLEAADAFG 203

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +  L+  ++    + + G +++ G  +V++G  N GKSSL N LA  +VAIVT +PGTT
Sbjct: 204 RLDRLEQRLTRVFERARQGRLLQGGLHVVLVGKPNVGKSSLLNRLAGDEVAIVTPLPGTT 263

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----N 309
           RD++   L +EG  + + DTAG+R+T+D +E+ GI+RT+ E+E AD+++LL +      +
Sbjct: 264 RDLVRSTLQVEGIPLHVIDTAGLRDTEDQIERLGIERTWREIERADVVVLLVDARTGVGD 323

Query: 310 SKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLEELINKIKSI 361
           +++ I   FP  +  +F+  K DL S   E  +       ++S+ +GEG E L  ++  I
Sbjct: 324 AERVILAKFPAKLARVFVYNKIDLTSRAAERREEADGVAIMLSARSGEGSELLRQELLRI 383

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
               +        + +RHL+ L++T + ++ A    +   L++ AE LRLA ++L +ITG
Sbjct: 384 A--GWHPAEDVFIARERHLHALAETRQNIDAAR--RQLPSLELFAEELRLAQLALSRITG 439

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               + LL  IF +FCIGK
Sbjct: 440 EYSADDLLGEIFGRFCIGK 458


>gi|91214599|ref|ZP_01251572.1| tRNA modification GTPase [Psychroflexus torquis ATCC 700755]
 gi|91187026|gb|EAS73396.1| tRNA modification GTPase [Psychroflexus torquis ATCC 700755]
          Length = 470

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 248/470 (52%), Gaps = 35/470 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR 59
             +TI A++T +   AI++IR+SG    ++C  + + K        +  +L+     DG+
Sbjct: 3   NNDTIIALATASGNGAIAVIRVSGNEALELCSPLFEAKSGISILDQKSHTLQLGTIQDGQ 62

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ILD+ L+ VF   +S+TGE + E   HG   +   I++ L K    R A PGEF+ RAF
Sbjct: 63  RILDEVLVSVFRGYKSYTGEPTVEISCHGSSFIQKEIIQLLIK-KGCRTAQPGEFTLRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADL+SS+     +L+M+ M G  ++   +   +L    S +E +LDF
Sbjct: 122 LNGKMDLSQAEAVADLVSSDNAASHQLAMQQMRGGFTNQIQELRQELLDFASLMELELDF 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           SE EDV+  + ++    +L ++  +S  I    +G +I+NG  + I+G  N GKS+L NA
Sbjct: 182 SE-EDVEFANREQFQALVLKIQKVLSRLIDSFAVGNVIKNGIPVAIVGEPNVGKSTLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIV++I GTTRD +  ++ + G   +  DTAGIRET D +E  GI+RTF +++ 
Sbjct: 241 LLNEERAIVSEIAGTTRDTIEDEISMGGIGFRFIDTAGIRETQDTIEGLGIQRTFEKIKQ 300

Query: 299 ADLILLLKE--------------------INSKKEISFPKNIDFIFIGTKSDLYST---- 334
           + +I+ L +                     +  +  +      F+ +  K+DL S     
Sbjct: 301 SQVIIKLIDSPKLFDDQQKLRTTEWKRIKADIHQLETDFPERSFLLLANKADLLSPENKD 360

Query: 335 -YTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
             T+E++    IS+    G+EE+  ++ S + +   +   +I ++ RH   L   +  + 
Sbjct: 361 LLTKEFEDLLFISAKDKTGIEEIQTRLLSFVDDGALRNNDTIVTNSRHYNALLLALEEIN 420

Query: 392 MASLNEK-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                   +   D++A ++R A    G+ITG V  ++LL  IF+ FCIGK
Sbjct: 421 KVQEGLNENLTTDLLAIDIRQALYHFGEITGEVTNDELLGNIFANFCIGK 470


>gi|194246565|ref|YP_002004204.1| tRNA modification GTPase TrmE [Candidatus Phytoplasma mali]
 gi|193806922|emb|CAP18351.1| tRNA modification GTPase [Candidatus Phytoplasma mali]
          Length = 452

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 152/451 (33%), Positives = 251/451 (55%), Gaps = 16/451 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLDGRIL 61
            +TI A+ T      +SIIR+SG    +    I K K   K      +  +    D  IL
Sbjct: 3   FDTIAAIITPFGTGGVSIIRISGTKTIEEIRKIFKGKNLNKMNSHTITHGFILNKDNIIL 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +F +P+SFTGED  E H HGGI +   +LE + ++  +R++ PGEFS+RA+ N 
Sbjct: 63  DEVLISLFKNPKSFTGEDVIEIHTHGGILITQMVLERILELN-IRMSLPGEFSQRAYLNR 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           KIDL++AES+ DLI ++ E   +++  G+  + S L  Q  +K+ ++ S IE ++D+ E 
Sbjct: 122 KIDLIQAESIMDLIYAKNENAIKIANLGLQKKTSQLVIQLREKILNLISQIEVNIDYPEY 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED    S + +L     L  +I + +        ++ G + +I+G  N GKSSL N   +
Sbjct: 182 EDTTVMSKENILPQTKLLIKEIKNVLKYSYKTRYLKEGVETLIIGRPNVGKSSLLNFFLE 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ +IV+DIPGTTRD + +  +L+G  + + DTAG+RE +D +EK G+ +T   ++ A+L
Sbjct: 242 EERSIVSDIPGTTRDFVDVYFNLQGITLHLIDTAGVREAEDKIEKIGVLKTKQLLKKAEL 301

Query: 302 ILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGL 351
           +LL+ + N       K+ ++  K+   I IG KSDL +   +    E    IS+   +GL
Sbjct: 302 VLLVLDQNNCLQSEDKELLNLTKDYPRILIGNKSDLKTKIEKQQLTEEIIFISTIEKKGL 361

Query: 352 EELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAENL 409
           E L N I  IL  +  K+  F+  S+ RH+  + + + +LE AS   + +  +DI  ++ 
Sbjct: 362 ELLKNNILKILKLDVIKEKDFNYFSNTRHIQQIKKALCFLEDASNSLQNNIPVDICVDDF 421

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +   LG I G    + L+  +FSKFC+GK
Sbjct: 422 KKSYEFLGLILGECQTDDLIKNLFSKFCLGK 452


>gi|295087115|emb|CBK68638.1| tRNA modification GTPase trmE [Bacteroides xylanisolvens XB1A]
          Length = 465

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 146/466 (31%), Positives = 232/466 (49%), Gaps = 33/466 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFPRKASLRYFFGLDG- 58
           ++TI A++T     AI  IR+SGP    +   I K  K        +  +L +    DG 
Sbjct: 3   QDTICAIATAQG-GAIGSIRVSGPEAISITGSIFKPAKAGKLLSEQKPYTLTFGRIYDGD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EMIDEVLVSLFRAPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           SE EDV+      +      ++  IS       +G  I+NG  + I+G +NAGKS+L N 
Sbjct: 181 SE-EDVEFADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLNV 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++ 
Sbjct: 240 LLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLDQ 299

Query: 299 ADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY---------- 339
           A+++L + +           S+K I   +    I +  K+DL     +E           
Sbjct: 300 AEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENVLSLLKDFPK 359

Query: 340 ----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                  IS+   +   EL   +              I ++ RH   L++ +  +     
Sbjct: 360 ESTESIFISAKQRKNTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQN 419

Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +     D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 420 GLDSQISGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|29349959|ref|NP_813462.1| tRNA modification GTPase TrmE [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|32171810|sp|Q89Z26|MNME_BACTN RecName: Full=tRNA modification GTPase mnmE
 gi|29341870|gb|AAO79656.1| putative GTPase, ThdF family [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 465

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 147/470 (31%), Positives = 235/470 (50%), Gaps = 35/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-----KKKKPFPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP    +   I       K     +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGSIRVSGPEAISITSRIFQPAKAGKLLSEQKPYTLTFGRI 57

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            +G  ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE++
Sbjct: 58  YNGEEVIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL+M  M G  S        KL +  S IE 
Sbjct: 117 QRAFLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRSKLLNFTSMIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFSE EDV+      +      ++  IS  +    +G  I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSE-EDVEFADRSALRKLADEIEQVISRLVHSFNVGNAIKNGVPVAIIGETNAGKST 235

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF 
Sbjct: 236 LLNVLLNEDKAIVSDIHGTTRDVIEDTINIGGITFRFIDTAGIRETNDTIESLGIERTFQ 295

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEE------- 338
           +++ A+++L + + +         S+K I   +    I +  K+DL     +E       
Sbjct: 296 KLDQAEIVLWMVDSSDASSQIKQLSEKIIPRCEEKQLIVVFNKADLIEEMQKEELSALLK 355

Query: 339 -------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                      IS+      +EL   + +            I ++ RH   LS+ +  + 
Sbjct: 356 NFPKEYTKSIFISAKERRQTDELQKMLINAAHLPTVTQNDIIVTNVRHYEALSKALDAIH 415

Query: 392 MASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 +     D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 416 RVQDGLDSHISGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|157964906|ref|YP_001499730.1| tRNA modification GTPase TrmE [Rickettsia massiliae MTU5]
 gi|166991114|sp|A8F2P7|MNME_RICM5 RecName: Full=tRNA modification GTPase mnmE
 gi|157844682|gb|ABV85183.1| tRNA modification GTPase TrmE [Rickettsia massiliae MTU5]
          Length = 445

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 154/448 (34%), Positives = 245/448 (54%), Gaps = 17/448 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDKG 64
           ETIFA S+    + +++ R+SGP   +V + +  +K    R    +         ++D  
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKDFKSRLMYYQQITVPETKELIDNV 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F SP SFTGED  E H HG  A+   +   L  +  +RLA  GEF++RAF N K D
Sbjct: 62  MVVYFKSPGSFTGEDVVEIHTHGSKAISIILTNALLNIAGIRLAEAGEFTKRAFLNNKFD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE +ADLI++ET MQ + ++   +G+L  LY  W  +L  I S +EA +DF + ED+
Sbjct: 122 LTAAEGIADLINAETIMQHKQAIRQANGKLEELYNNWRSQLLKIISLLEAYIDFPD-EDI 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +    EV N    L N IS +++  + GE++R+G K+ I+G  N GKSSL N L ++D+
Sbjct: 181 PDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDI 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIV++I GTTRD++   LD+ GY + + DTAGI  E+ DI+E+EGIKR     + AD+ +
Sbjct: 241 AIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIGEESSDIIEQEGIKRAINSAKTADIKI 300

Query: 304 LLKEINS-----KKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---SSFTGEGLE 352
           ++ +         ++I    + + I I  K DL      ++ E  +     S      L 
Sbjct: 301 IMFDAEKLDSSINEDIINLIDENTITIINKIDLIEASKIFSIENKYKCLRVSVKNNIALS 360

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            ++  I++I  N          +++RH  +L Q + +L   SL   D  L +  E++R+ 
Sbjct: 361 SILKNIENIAENMAGFTETPYITNQRHRNYLQQALSHLTAFSL---DNDLVLATEDIRMT 417

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +G I G ++VE++L  IF  FCIGK
Sbjct: 418 ARCIGAIMGVINVEEILGEIFKNFCIGK 445


>gi|299148912|ref|ZP_07041974.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_23]
 gi|298513673|gb|EFI37560.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_23]
          Length = 465

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 146/466 (31%), Positives = 232/466 (49%), Gaps = 33/466 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFPRKASLRYFFGLDG- 58
           ++TI A++T     AI  IR+SGP    +   I K  K        +  +L +    DG 
Sbjct: 3   QDTICAIATAQG-GAIGSIRVSGPEAISITGSIFKPAKAGKLLSEQKPYTLTFGRIYDGD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EMIDEVLVSLFRAPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           SE EDV+      +      ++  IS       +G  I+NG  + I+G +NAGKS+L N 
Sbjct: 181 SE-EDVEFADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLNV 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++ 
Sbjct: 240 LLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLDQ 299

Query: 299 ADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY---------- 339
           A+++L + +           S+K I   +    I +  K+DL     +E           
Sbjct: 300 AEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKTDLIEDKQKENVLSLLKDFPK 359

Query: 340 ----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                  IS+   +   EL   +              I ++ RH   L++ +  +     
Sbjct: 360 ESTESIFISAKQRKNTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQN 419

Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +     D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 420 GLDSQISGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|33866852|ref|NP_898411.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8102]
 gi|46577381|sp|Q7U3V6|MNME_SYNPX RecName: Full=tRNA modification GTPase mnmE
 gi|33639453|emb|CAE08837.1| putative thiophen / furan oxidation protein [Synechococcus sp. WH
           8102]
          Length = 450

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/438 (30%), Positives = 231/438 (52%), Gaps = 15/438 (3%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPS 71
                I+++R+SGP+       +     ++     +    +    +GR LD+ LL++   
Sbjct: 16  PGQGGIAVVRVSGPAAEATGRSVVHCPGRQVCGSHRVMYGHVIDGEGRRLDEVLLLLMRG 75

Query: 72  PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131
           P SFTGED  E H HGG+  V  +LE +   P +R A PGEFS+RA  NG++DL  AE++
Sbjct: 76  PRSFTGEDVVEIHCHGGVVAVQQVLERVLAHPGVRRALPGEFSQRAVLNGRLDLTRAEAV 135

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           ++L+++ +     L+M G+ G + +      ++L    + +EA +DF E  D+       
Sbjct: 136 SELVAARSRRAAELAMAGLDGGIQAKITALRERLLDQLTELEARVDFEE--DLPPLDGDA 193

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
           +L+ +  ++  + + ++ G+  + +R+G ++ ++G  N GKSSL N L++++ AIVT++P
Sbjct: 194 LLDGLQQVRQALLTLVADGERADALRSGLRVALVGRPNVGKSSLLNRLSRRERAIVTELP 253

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--- 308
           GTTRD+L  ++ LEG  + + DTAGIR TDD VE+ GI R+   +  AD++LL+ +    
Sbjct: 254 GTTRDLLESEIVLEGVPITLLDTAGIRSTDDAVEQLGIARSEEALATADVVLLVLDGHAG 313

Query: 309 ----NSKKEISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLEELINKIKSILS 363
               ++      P++I  I +  K+DL +    +  D  +S+  G G E+L+  +     
Sbjct: 314 WTAEDAALLARIPEHIPRILVANKADLPAGALPQPVDVQLSALEGTGEEDLVQALLER-C 372

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
                    +  ++R     +     L     +  +    D    +LR A  +LG+ITG 
Sbjct: 373 GAAGTEGVLLALNERQRDLAATAAAALGRSQEVAAQQLPWDFWTIDLREAIRALGEITGE 432

Query: 423 VDVEQLLDIIFSKFCIGK 440
              E +LD +FS+FCIGK
Sbjct: 433 ELTEAVLDRVFSRFCIGK 450


>gi|85714095|ref|ZP_01045084.1| tRNA modification GTPase [Nitrobacter sp. Nb-311A]
 gi|85699221|gb|EAQ37089.1| tRNA modification GTPase [Nitrobacter sp. Nb-311A]
          Length = 456

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 164/458 (35%), Positives = 243/458 (53%), Gaps = 20/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  ++TIFA+S+G  PSAI+++R+SGP        +     P  R A         G  
Sbjct: 1   MHPREQTIFALSSGRPPSAIAVVRVSGPQAGAALRELAG-AIPVARMARRVLLRDRIGEA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ FP+P S TGED AEFH+HGG AV+N +   L+ + N R A PGEF+RRAFEN
Sbjct: 60  IDDAVVLWFPAPASATGEDVAEFHIHGGRAVLNALFAALSSIDNTRAAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL EAE L DLI ++T+ QRR ++  + G L      W  +L    + IEA +DF +
Sbjct: 120 GKIDLTEAEGLDDLIHADTDRQRRQALRQLQGLLGDRARGWRKELIEASALIEAGIDFVD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV     K  +  I  L+ +I   ++     E +R+G  I I G  NAGKS+L N L 
Sbjct: 180 EGDVPEDLLKPAMEKIAQLRREIEQTLAAPAQSERLRDGLMIAITGPPNAGKSTLLNRLV 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIV+   GTTRD++   LDL+GY V + DTAGIRETDD VE+EG++R      +AD
Sbjct: 240 RREAAIVSPHAGTTRDIIEAYLDLDGYPVTLIDTAGIRETDDPVEQEGMRRARDRAASAD 299

Query: 301 LILLLKEIN--SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HL 342
           L+L L +             +     +  K DL     +E +                  
Sbjct: 300 LVLWLSDGEMADLDPTIRVGDCSLWLVRNKIDLSGPENDEANPRQRETTTARGSRVRRFR 359

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+  G+GL++L+  +     ++       + +  R    L      L  A       G 
Sbjct: 360 VSARRGDGLDDLVAALTVFAGDRLGSSEAGVITRLRQRNILRDAAGSLARAEA-LAGRGD 418

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++IAE LR+A   +G++ G VD++ +LD +F +FCIGK
Sbjct: 419 ELIAEELRIAIHLMGRLLGRVDIDDILDSLFKEFCIGK 456


>gi|289667654|ref|ZP_06488729.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 446

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 240/449 (53%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +    +  PR A    F    G +
Sbjct: 1   MSSSSSTIVAIASAAGIGGVGIVRLSGPQSVQIVAQL-GIARLQPRHAHYARFRDAQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  VDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       D LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSRRVDAVADTLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E +      +V + +   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 -EPLDTLGGNQVRDGLTQARTLLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+RE  D +E+EG++R   E+E AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDAIEREGMRRARAELERAD 297

Query: 301 LILLLKEINSKKEISFPKNIDFI------FIGTKSDLYSTY--TEEYDHLISSFTGEGLE 352
           L L++ +    +                 +I  K DL S     +    ++S+ TG+GLE
Sbjct: 298 LALVVLDARDPQAAREAIGDAIDAVPRQLWIHNKCDLLSDAVPLDANAIVVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++ + L +  + +     +  RH+  L +  +++++A L      L++ AE LRL
Sbjct: 358 QLHIRLRELALGDGVESVDGEFFARTRHVEALRRAEQHVDIADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKISADDLLGKIFSSFCIGK 446


>gi|90194090|gb|ABD92606.1| ThdF [Actinobacillus genomosp. 2]
 gi|90194096|gb|ABD92609.1| ThdF [Actinobacillus arthritidis]
          Length = 436

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 146/439 (33%), Positives = 239/439 (54%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP    V + +  K+   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRISGPLAQTVAKEVLGKEL-KPRLANYLPFKDQDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ + ++  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDILLKRILEIKGIRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   ++    + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 EGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+RE  D VE+ GI+R + E+E AD +LL+ +   + 
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIQRAWDEIEQADHVLLMIDSTEQT 298

Query: 313 EISF-----------PKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFTGEGLEELI 355
             +F           P+NI    I  K DL   +   +E D      +S+ T  G++ L 
Sbjct: 299 AEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|170077787|ref|YP_001734425.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7002]
 gi|205829178|sp|B1XKC3|MNME_SYNP2 RecName: Full=tRNA modification GTPase mnmE
 gi|169885456|gb|ACA99169.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7002]
          Length = 460

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/460 (32%), Positives = 239/460 (51%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTGALP--SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           +TI A+++  +P   +I I+RLSG +   +   + +         S R  +G        
Sbjct: 5   DTIVAIASAVVPNQGSIGIVRLSGAAALPIARQLFQ-DPGQQTWESHRILYGYVRHPQTQ 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ LL++  +P SFT ED  EFH HGGI  V  +L+ L      RLA PGEF+ RAF
Sbjct: 64  TIVDEALLLLMLAPRSFTAEDVVEFHCHGGIIPVQQVLQ-LCLGAGARLATPGEFTLRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AES+A+L+ +++    ++++ G+ G+L+    Q   +   I + +EA +DF
Sbjct: 123 LNGRIDLTQAESVAELVGAKSPQSAQVALAGIQGKLAQPIQQLRGQCLDILAEVEARIDF 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            +  D+      ++  D+  +   ++  +     GE++R G K+ I+G  N GKSSL NA
Sbjct: 183 ED--DLPPLDEPQIQRDLTQVLEKVAQILQTSDRGELLRTGLKVAIVGRPNVGKSSLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            ++ D AIVTD+PGTTRDV+   L ++G  V++ DTAGIR+T+D VEK G+ R+    + 
Sbjct: 241 WSRSDRAIVTDLPGTTRDVVESQLVVQGIPVQVLDTAGIRDTEDAVEKIGVARSLAASQQ 300

Query: 299 ADLILLLKEI-----NSKKEI-----SFPKNIDFIFIGTKSDLYSTYTEEYD------HL 342
           ADLIL   +       + +EI     +   N   I I  K D+      E          
Sbjct: 301 ADLILFTIDAAVGWTAADQEIFQRIVATKANQPLILILNKIDIGQPEAIEIPPQVQGVVK 360

Query: 343 ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
            ++   +G++EL   I +++   K          ++R    L+Q  + L        +  
Sbjct: 361 TAAAQHQGVDELETAIANLVQAGKVGAADLDFAINQRQAAALAQAQQALIQVRETIAQGL 420

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD    +LR A  +LG+ITG    E +LD IFS+FCIGK
Sbjct: 421 PLDFWTIDLRSAIQALGEITGEGVTESVLDRIFSRFCIGK 460


>gi|312897434|ref|ZP_07756858.1| tRNA modification GTPase TrmE [Megasphaera micronuciformis F0359]
 gi|310621495|gb|EFQ05031.1| tRNA modification GTPase TrmE [Megasphaera micronuciformis F0359]
          Length = 459

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/454 (31%), Positives = 225/454 (49%), Gaps = 22/454 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP------FPRKASLRYFFGLDGRI 60
           TI A++T    S + IIR+SG   + + E I + K          R           GR 
Sbjct: 8   TIAAIATATGESGVGIIRISGTEAYNIGEKIFRSKGKTRFKDFKDRTIHFGTIVDEKGRE 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+++   P S+T ED  E   HGG   V+GIL+ L      RLA  GEF++RAF N
Sbjct: 68  IDEALVLIMKRPHSYTAEDVLEIQCHGGRQSVSGILK-LVLRSGARLARAGEFTQRAFMN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL++AE++ D+I +++      ++  + G LS +      +LT   + +E  +D+ E
Sbjct: 127 GRIDLVQAEAVMDVIQAKSSKGLSTALSQLEGRLSGIVAAMRTELTDFITRLEVTVDYPE 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+++    ++   +  +   +   +     G IIR+G  + I G  NAGKSSL N L 
Sbjct: 187 -EDLEDIVVHDLEKTMRCMMERMEQMLKDSSKGRIIRDGMTVAIAGAPNAGKSSLLNYLL 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDIPGTTRD L   + ++G   ++ DTAGIRET D VE  G+ +    +E AD
Sbjct: 246 AEDRAIVTDIPGTTRDALEEWVSIQGIPFRLVDTAGIRETTDTVEAIGVTKARNYIETAD 305

Query: 301 LILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT-------EEYDHLISSFT 347
            +L+LK+         K  I+   +     + TKSDL                  +SS T
Sbjct: 306 TVLILKDRTQPFSDEDKALINSVPDGKGAIVLTKSDLKPLLECKDLEVYGLPVFSLSSKT 365

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDIIA 406
           G+G+  L   + S            + S+ RH+  + Q++  L+ A          D+I 
Sbjct: 366 GDGISLLEEYLVSRSGESGAGENEVLLSNMRHIELMRQSLNALKRAEETMYAGMPTDLIL 425

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LR A   LG +TG    + ++  IFS+FC+GK
Sbjct: 426 VDLREAWELLGAVTGETVQDDMVGEIFSRFCLGK 459


>gi|153807730|ref|ZP_01960398.1| hypothetical protein BACCAC_02012 [Bacteroides caccae ATCC 43185]
 gi|149129339|gb|EDM20553.1| hypothetical protein BACCAC_02012 [Bacteroides caccae ATCC 43185]
          Length = 465

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 149/470 (31%), Positives = 236/470 (50%), Gaps = 35/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP    +   I K  K        +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGSIRVSGPEAISITSRIFKPAKAGKLFNDQKPYTLTFGRI 57

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            DG  I+D+ L+ +F +P S+TGE+S E   HG   ++  +++ L K    R+A PGE++
Sbjct: 58  YDGEEIIDEVLVSLFRAPHSYTGENSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE 
Sbjct: 117 QRAFLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFSE EDV+      +      ++  IS  +    +G  I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSE-EDVEFADRSALRKLADEIEQVISRLVHSFSVGNAIKNGVPVAIIGETNAGKST 235

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF 
Sbjct: 236 LLNVLLNEERAIVSDIHGTTRDVIEDTINIGGVTFRFIDTAGIRETNDTIESLGIERTFQ 295

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY------ 339
           +++ A+++L + +           S+K I   +    I +  K+DL     +E       
Sbjct: 296 KLDQAEIVLWMIDSVNAASQIEQLSEKIIPRCEGKHLIAVFNKADLIEEKQKEDLLTLLK 355

Query: 340 --------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                      IS+      EEL   + +            I ++ RH   LS+ +  + 
Sbjct: 356 DFSKEYTESIFISAKQRGNTEELQKMLINAAHLPTVTQNDIIVTNVRHYEALSKALEAIH 415

Query: 392 MASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 +     D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 416 RVQDGLDSQISGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|298482641|ref|ZP_07000825.1| tRNA modification GTPase TrmE [Bacteroides sp. D22]
 gi|298271104|gb|EFI12681.1| tRNA modification GTPase TrmE [Bacteroides sp. D22]
          Length = 465

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/467 (31%), Positives = 230/467 (49%), Gaps = 35/467 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-------FPRKASLRYFFGLD 57
           ++TI A++T     AI  IR+SGP    +   I K  K         P   +    +  D
Sbjct: 3   QDTICAIATAQG-GAIGSIRVSGPEAISITGSIFKPAKAGKLLSEQKPYTLTFGRIYDED 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RA
Sbjct: 62  -EMIDEVLVSLFRAPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAQPGEYTQRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE +LD
Sbjct: 120 FLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE EDV+      +      ++  IS       +G  I+NG  + I+G +NAGKS+L N
Sbjct: 180 FSE-EDVEFADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++
Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298

Query: 298 NADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------- 339
            A+++L + +           S+K I   +    I +  K+DL     +E          
Sbjct: 299 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENVLSLLKDFP 358

Query: 340 -----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
                   IS+   +   EL   +              I ++ RH   L++ +  +    
Sbjct: 359 KESTESIFISAKQRKNTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 418

Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +     D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 419 NGLDSQISGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|256830922|ref|YP_003159650.1| tRNA modification GTPase TrmE [Desulfomicrobium baculatum DSM 4028]
 gi|256580098|gb|ACU91234.1| tRNA modification GTPase TrmE [Desulfomicrobium baculatum DSM 4028]
          Length = 457

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 139/459 (30%), Positives = 225/459 (49%), Gaps = 21/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRYFFG 55
           MN   +TI A++T     AI I+RLSGPS  ++   +    +P      P +        
Sbjct: 1   MNTNNDTIVAIATPPGQGAIGIVRLSGPSAGEIARSLFHSSRPGFTDFKPYQLHHGQLRD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G  LD+ L    P P SFTGED  E   HGG A++  ++EE       RLA  GEFS+
Sbjct: 61  GRGNFLDEVLAAFMPGPGSFTGEDVVELQCHGGGAILRRVVEECL-AGGARLAEAGEFSK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N ++DL +AE++ +L+ + T +   L+   + G L+   GQ    L  +R  +   
Sbjct: 120 RAFLNTRMDLTQAEAIMELVGAPTAVAVGLAGSKLEGLLAHRIGQLRAGLESVRVQLCVA 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF E+E V+  + +++  DI  ++  ++        G   R+G  +V+ G  NAGKSSL
Sbjct: 180 VDFPEDE-VECLAPQDLARDIAEIREAMAELADNYDRGRCWRDGALVVLAGQVNAGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NA+   + AIVTDIPGTTRD L   + ++G  V++ DTAG+R   D VE  GI+R+   
Sbjct: 239 MNAILGINRAIVTDIPGTTRDYLEESVQIDGLPVRLVDTAGLRAALDSVELLGIERSREL 298

Query: 296 VENADLILLLKEIN----SKKEISFPKNIDFIFIGTKSDLY---------STYTEEYDHL 342
           +  ADL+LL+ +      ++      +  + + +  K DL          S + ++    
Sbjct: 299 LARADLVLLVIDSELGPGAEDLDLAAETENLLVVANKMDLVAGEPAWTRESPWKDKELCR 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
           + +  G+G+  L+  I+ +++        ++  + R    L +    L            
Sbjct: 359 LCAKHGQGVSGLLAAIRRMVAATGAPEAGTLVPNLRQHTALVRAAEELAHLLDELAAGLP 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            DI++  L  A   L +ITG +  E++L  +F  FCIGK
Sbjct: 419 YDILSVRLDTACAILAEITGEITSEEVLRAVFDGFCIGK 457


>gi|254476302|ref|ZP_05089688.1| tRNA modification GTPase TrmE [Ruegeria sp. R11]
 gi|214030545|gb|EEB71380.1| tRNA modification GTPase TrmE [Ruegeria sp. R11]
          Length = 428

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 169/437 (38%), Positives = 245/437 (56%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    + +S+IRLSGP        I     P   +A LR      G  +D+ L
Sbjct: 2   DTIFALASAQGKAGVSVIRLSGPQALPTASKISGGDLPTAGRA-LRVLSDQSGERIDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED+ EF VHG  +VV+ +L  LA+   +RLA+PGEF+RRA ENGK+DL
Sbjct: 61  VLTFAGPNSFTGEDTVEFQVHGSTSVVSAMLALLAEFDGVRLADPGEFTRRALENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E+LADLI +ETE QR  +   ++G L +L  +W   L    S IE  +DF++ E+V 
Sbjct: 121 SQVEALADLIDAETEAQRIQAQTVLAGGLGALAERWRVDLIRAASLIEVTIDFAD-EEVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV   +  + +D+   I+  ++ E IR+G+++ I+G  N GKS+L NALA ++ A
Sbjct: 180 VDVTDEVTALLAGVVSDLQPQITGVQIAERIRSGFEVAIVGAPNVGKSTLLNALAGREAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRDV+ + +DL G  V + DTAG+RETDD VE  GI+      E ADL + L
Sbjct: 240 ITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETDDHVEGIGIELAKKRAETADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                + +I  P     I +  K+DL S          S  TG+G+++L+ +I  IL ++
Sbjct: 300 --AGDRNDIDLPIRDQDIVLKPKADLLSDVPGAI----SGKTGQGVDDLVREIGRILKDR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCV 423
             K    I +  RH   +      L  A    K      DI AE++R A  SL  + G V
Sbjct: 354 AGK--AGIATRARHRDAMKAASDRLMSAQEILKRGPEFYDIAAEDMRSAIRSLEMLVGRV 411

Query: 424 DVEQLLDIIFSKFCIGK 440
            VE LLD IFS FC+GK
Sbjct: 412 GVENLLDEIFSSFCLGK 428


>gi|293370767|ref|ZP_06617313.1| tRNA modification GTPase TrmE [Bacteroides ovatus SD CMC 3f]
 gi|292634127|gb|EFF52670.1| tRNA modification GTPase TrmE [Bacteroides ovatus SD CMC 3f]
          Length = 473

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/467 (31%), Positives = 230/467 (49%), Gaps = 35/467 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-------FPRKASLRYFFGLD 57
           ++TI A++T     AI  IR+SGP    +   I K  K         P   +    +  D
Sbjct: 11  QDTICAIATAQG-GAIGSIRVSGPEAISITGSIFKPAKAGKLLSEQKPYTLTFGRIYDED 69

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RA
Sbjct: 70  -EMIDEVLVSLFRAPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAQPGEYTQRA 127

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE +LD
Sbjct: 128 FLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELD 187

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE EDV+      +      ++  IS       +G  I+NG  + I+G +NAGKS+L N
Sbjct: 188 FSE-EDVEFADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 246

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++
Sbjct: 247 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 306

Query: 298 NADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------- 339
            A+++L + +           S+K I   +    I +  K+DL     +E          
Sbjct: 307 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENVLSLLKDFP 366

Query: 340 -----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
                   IS+   +   EL   +              I ++ RH   L++ +  +    
Sbjct: 367 KESTESIFISAKQRKNTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 426

Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +     D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 427 NGLDSQISGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 473


>gi|260434789|ref|ZP_05788759.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8109]
 gi|260412663|gb|EEX05959.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8109]
          Length = 450

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 135/438 (30%), Positives = 233/438 (53%), Gaps = 15/438 (3%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPS 71
                I++IRLSGP+       +     +++    +    +    +GR LD+ LL++   
Sbjct: 16  PGQGGIAVIRLSGPAAEATGRSVVHCPGRQEWGSHRVVYGHVMDGEGRRLDEVLLLLMRG 75

Query: 72  PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131
           P SFTGED  E H HGG+  V  +LE++ + P +R A PGEFS+RA  NG++DL  AE++
Sbjct: 76  PRSFTGEDVVEIHCHGGVIAVQRVLEQVLRQPGVRRALPGEFSQRAVLNGRLDLTRAEAV 135

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           ++L+++ +     L++ G+ G + +      ++L    + +EA +DF E  D+     + 
Sbjct: 136 SELVAARSRRAAELAIAGLDGGIQAQITALRERLLDQLTELEARVDFEE--DLPPLDGEA 193

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
           +   +  ++ ++   +  G+ G+ +R G ++ ++G  N GKSSL N L++++ AIVTD+P
Sbjct: 194 LQQQLQAVRLELQQLVRDGERGDALRKGLRVALVGRPNVGKSSLLNRLSRRERAIVTDLP 253

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--- 308
           GTTRD+L  ++ LEG  + + DTAGIR TDD VE+ GI R+   +  AD++LL+ +    
Sbjct: 254 GTTRDLLESEIALEGVPITLLDTAGIRSTDDAVERLGIARSEEALATADVVLLVLDGHAG 313

Query: 309 ----NSKKEISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLEELINKIKSILS 363
               ++      P+ I  I +  K+DL + T+ +  D  +S+  G G  +L+  +     
Sbjct: 314 WTSEDAALLARIPEQIPRILVANKADLPAGTFPQPVDVQLSALEGTGEADLVQVLLER-C 372

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKITGC 422
                    +  ++R     +Q    L     +  +    D    +LR A  +LG+ITG 
Sbjct: 373 GAAGTEGVLLALNQRQRDLAAQAAEALACSQEVAAQQLPWDFWTIDLREAIRALGEITGE 432

Query: 423 VDVEQLLDIIFSKFCIGK 440
              E +LD +FS+FCIGK
Sbjct: 433 EITEAVLDRVFSRFCIGK 450


>gi|58428851|gb|AAW77888.1| thiophene and furan oxidation protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 462

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 147/449 (32%), Positives = 237/449 (52%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +    +  PR A    F    G +
Sbjct: 17  MSSSTSTIVAIASAAGTGGVGIVRLSGPQSRQIAVQL-GVARLQPRHAHYARFRDAQGAV 75

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 76  IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 134

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++AD+I++      R +   + G  S         LT +R  +EA +DF++
Sbjct: 135 GKLDLAQAEAIADVIAAGDLRAARAARRALDGVFSRRVDAVAHTLTRLRIHVEAAIDFAD 194

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E +      +V + +   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 195 -EPLDTLGGNQVRDGLTQARTLLAQLLRDAERGRTLRDGLHAVLIGPPNAGKSSLLNALA 253

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E AD
Sbjct: 254 GSERAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 313

Query: 301 LILLLKEINSKKEISFPKNIDFI------FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +                 +I  K DL S     +     +S+ TG+GLE
Sbjct: 314 LALVVLDARDPQAARAAIGDAIDAVPRQLWIHNKCDLLSDAAPLDVNAIAVSAVTGQGLE 373

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++ + L +  + +     +  RH+  L +  R+++ A L      L++ AE LRL
Sbjct: 374 QLHIRLRELALGDGVESVDGEFSARTRHVEALRRAERHVDAADLELGFEQLELAAEELRL 433

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 434 AHEALGEITGKISADDLLGKIFSSFCIGK 462


>gi|188579254|ref|YP_001916183.1| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|226704788|sp|B2SUV8|MNME_XANOP RecName: Full=tRNA modification GTPase mnmE
 gi|188523706|gb|ACD61651.1| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 446

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 148/449 (32%), Positives = 237/449 (52%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +    +  PR A    F    G +
Sbjct: 1   MSSSTSTIVAIASAAGTGGVGIVRLSGPQSRQIAVQL-GVARLQPRHAHYARFRDAQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++AD+I++      R +   + G  S         LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADVIAAGDLRAARAARRALDGVFSRRVDAVAHTLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E +      +V + +   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 -EPLDTLGGNQVRDGLTQARTLLAQLLRDAERGRTLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297

Query: 301 LILLLKEINSKKEISFPKNIDFI------FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +                 +I  K DL S     +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDPQAARAAIGDAIDAVPRQLWIHNKCDLLSDAAPLDVNAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++ + L +  + +     +  RH+  L +  R+++ A L      L++ AE LRL
Sbjct: 358 QLHIRLRELALGDGVESVDGEFSARTRHVEALRRAERHVDAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKISADDLLGKIFSSFCIGK 446


>gi|300814730|ref|ZP_07094978.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511117|gb|EFK38369.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 459

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/458 (32%), Positives = 252/458 (55%), Gaps = 26/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK------KPFPRKASLRYFFGLDGR 59
           +TI A+ST    + I+I+R SG +  ++ + I K K          RK    + +  D +
Sbjct: 5   DTIAAISTAVGEAGIAIVRTSGDNSVEIVDKIFKAKSKKKLKDSENRKFIYGHIYDND-K 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L +    P S++GE+  E H HGGI  V  IL  L      RLA  GEF++R F 
Sbjct: 64  IIDEVLAVKMLGPHSYSGENIVEIHCHGGIVAVRRILN-LLLANGARLAQKGEFTKRGFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++TE    +SM+ + G +S    +    L  +++ I A++DF 
Sbjct: 123 NGRIDLSQAEAVIDLIKAKTEDSFDISMKQLKGSISKEVEKIEKNLVGMQALIVANIDFP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+E V++ +  E+      +  +I   ++    G+++R G   +ILG  N GKSSL N +
Sbjct: 183 EDE-VEDATYDELKRRNDEITLNIRELLNNAGRGKLLREGINTLILGKPNVGKSSLLNGM 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K + AIVTDIPGTTRD +   ++L+G L+K++DTAGIR+TDD VEK G+K    +++ A
Sbjct: 242 LKYERAIVTDIPGTTRDTIEDYINLDGLLLKVTDTAGIRQTDDEVEKIGVKIARDKIKEA 301

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LIS 344
           DL++++ ++      + ++ +   +N   +FI  K DL +  ++E             +S
Sbjct: 302 DLVIVIFDLSRPFNKDDREILDLIQNKKALFIMNKDDLQARVSDEDIKELLNDRDYLKLS 361

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
               E ++ + N IK +    +  +      ++ RH+  L + ++ +E   L+ E +  L
Sbjct: 362 VRNPEEIKLVENAIKDMFFSGEIIQKDQVYVNNIRHIDALKKALKTMEETRLDLENEVFL 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  NL  A   + KITG +  E +LD +FS+FCIGK
Sbjct: 422 DLVEVNLEEALEEISKITGEITTEDVLDRVFSEFCIGK 459


>gi|122879374|ref|YP_203273.6| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|205829214|sp|Q5GTT5|MNME_XANOR RecName: Full=tRNA modification GTPase mnmE
          Length = 446

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 147/449 (32%), Positives = 237/449 (52%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +    +  PR A    F    G +
Sbjct: 1   MSSSTSTIVAIASAAGTGGVGIVRLSGPQSRQIAVQL-GVARLQPRHAHYARFRDAQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++AD+I++      R +   + G  S         LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADVIAAGDLRAARAARRALDGVFSRRVDAVAHTLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E +      +V + +   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 -EPLDTLGGNQVRDGLTQARTLLAQLLRDAERGRTLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E AD
Sbjct: 238 GSERAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297

Query: 301 LILLLKEINSKKEISFPKNIDFI------FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +                 +I  K DL S     +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDPQAARAAIGDAIDAVPRQLWIHNKCDLLSDAAPLDVNAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++ + L +  + +     +  RH+  L +  R+++ A L      L++ AE LRL
Sbjct: 358 QLHIRLRELALGDGVESVDGEFSARTRHVEALRRAERHVDAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKISADDLLGKIFSSFCIGK 446


>gi|282881766|ref|ZP_06290424.1| tRNA modification GTPase TrmE [Peptoniphilus lacrimalis 315-B]
 gi|281298376|gb|EFA90814.1| tRNA modification GTPase TrmE [Peptoniphilus lacrimalis 315-B]
          Length = 459

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/458 (32%), Positives = 253/458 (55%), Gaps = 26/458 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK------KPFPRKASLRYFFGLDGR 59
           +TI A+ST    + I+I+R SG +  ++ + I K K          RK    + +  D +
Sbjct: 5   DTIAAISTAVGEAGIAIVRTSGDNSVEIVDKIFKAKSKKKLKDSENRKFIYGHIYDND-K 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L +    P S++GE+  E H HGGI  V  IL  L      RLA  GEF++R F 
Sbjct: 64  IIDEVLAVKMLGPHSYSGENIVEIHCHGGIVAVRRILN-LLLANGARLAQKGEFTKRGFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ DLI ++TE    +SM+ + G +S    +    L  +++ I A++DF 
Sbjct: 123 NGRIDLSQAEAVIDLIKAKTEDSFDISMKQLEGSISKEVEKIEKNLVGMQALIVANIDFP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+E V++ +  E+      +  +I   ++    G+++R G   +ILG  N GKSSL N +
Sbjct: 183 EDE-VEDATYDELKRRNDEITLNIRKLLNNAGRGKLLREGINTLILGKPNVGKSSLLNGM 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K + AIVTDIPGTTRD +   ++L+G L+K++DTAGIR+TDD VEK G+K    ++++A
Sbjct: 242 LKYERAIVTDIPGTTRDTIEDYINLDGLLLKVTDTAGIRQTDDEVEKIGVKIARDKIKDA 301

Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---------IS 344
           DL++++ ++      + ++ +   +N   +FI  K DL +  ++E             +S
Sbjct: 302 DLVIVIFDLSRPFNKDDREILDLIQNKKALFIMNKDDLQARVSDEDIKDLLNDRDYLKLS 361

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402
               E ++ + N IK +    +  +      ++ RH+  L + ++ +E   L+ E +  L
Sbjct: 362 VRNPEEIKLVENAIKDMFFSGEIIQKDQVYVNNIRHIDALKKALKTMEETRLDLENEVFL 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  NL  A   + KITG +  E +LD +FS+FCIGK
Sbjct: 422 DLVEVNLEEALEEISKITGEITTEDVLDRVFSEFCIGK 459


>gi|253569670|ref|ZP_04847079.1| tRNA modification GTPase mnmE [Bacteroides sp. 1_1_6]
 gi|251840051|gb|EES68133.1| tRNA modification GTPase mnmE [Bacteroides sp. 1_1_6]
          Length = 465

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 148/470 (31%), Positives = 236/470 (50%), Gaps = 35/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-----KKKKPFPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP    +   I       K     +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGSIRVSGPEAISITSRIFQPAKAGKLLSEQKPYTLTFGRI 57

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            +G  ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE++
Sbjct: 58  YNGEEVIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL+M  M G  S        KL +  S IE 
Sbjct: 117 QRAFLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRSKLLNFTSMIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFSE EDV+      +      ++  IS  +    +G  I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSE-EDVEFADRSALRKLADEIEQVISRLVHSFNVGNAIKNGVPVAIIGETNAGKST 235

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF 
Sbjct: 236 LLNVLLNEDKAIVSDIHGTTRDVIEDTINIGGITFRFIDTAGIRETNDTIESLGIERTFQ 295

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEE------- 338
           +++ A+++L + + +         S+K I   +    I +  K+DL     +E       
Sbjct: 296 KLDQAEIVLWMVDSSDASSQIKQLSEKIIPRCEEKQLIVVFNKADLIEEKQKEELSALLK 355

Query: 339 -------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                      IS+   +  +EL   + +            I ++ RH   LS+ +  + 
Sbjct: 356 DFPKEYTKSIFISAKERKQTDELQKMLINAAHLPTVTQNDIIVTNVRHYEVLSKALDAIH 415

Query: 392 MASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 E     D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 416 RVQDGLETHISGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|260911951|ref|ZP_05918515.1| thiophene and furan oxidation protein ThdF [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260633898|gb|EEX52024.1| thiophene and furan oxidation protein ThdF [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 460

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/460 (30%), Positives = 236/460 (51%), Gaps = 23/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF------PRKASLRYFF 54
           + ++++TI A++T A   A+ +IR+SG     + +   K  K         +     +  
Sbjct: 4   LLNDRQTICALATSAG-GALGVIRVSGSDAIDIVDRAFKAPKGKSLHTLPAQMVQYGHIV 62

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                 +D+ L+  F +P S+TGE+S E   HG   ++N +L+ L ++   R A PGEF+
Sbjct: 63  DERAHPIDEVLVTCFHAPHSYTGENSVEISCHGSAYILNEVLKLLVRL-GCRQAQPGEFT 121

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI++      +L++  + G  S       DKL HI S IE 
Sbjct: 122 QRAFLNGKMDLSQAEAVADLIAATNRASAQLALGQLRGHFSGELATLRDKLLHITSLIEL 181

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ +DV     +E+      ++  I+S  +  + G  I+ G  + I+G +N GKS+
Sbjct: 182 ELDFSD-QDVTFADRQELQALAEEIRTKIASLATSFETGRAIKAGISVAIVGKTNVGKST 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L K++ AIV+DI GTTRDV+   + + G   +  DTAGIR+T D +E  GI+RT+ 
Sbjct: 241 LLNRLLKEERAIVSDIHGTTRDVIEDTIQINGINFRFIDTAGIRKTSDEIESLGIERTYQ 300

Query: 295 EVENADLILLLKE-INSKKEI----SFPKNIDFIFIGTKSDLYS------TYTEEYDHLI 343
           ++  A ++L + +   S  EI    +  +    I +  K+D  S      ++TE+   + 
Sbjct: 301 KLTEAAVVLWVIDKAPSLSEIEEMDAHTRGKRLIVVSNKNDEQSFVFPTFSWTEQPTFVS 360

Query: 344 SSFT-GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCG 401
            S      +E L   I +  +         + ++ RH   L+  +  ++        D  
Sbjct: 361 VSAKFNTNIETLETSIYNAANIPEIHENDVVVTNVRHYEALTHALASIQRVLDGIALDLS 420

Query: 402 LDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
            D+++E+LR     L +IT G +   ++L  IF  FCIGK
Sbjct: 421 GDLLSEDLRQCLHFLAEITGGGITSNEVLGNIFKHFCIGK 460


>gi|218291088|ref|ZP_03495111.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218238973|gb|EED06180.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 465

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 148/460 (32%), Positives = 244/460 (53%), Gaps = 25/460 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRY---FFGLD 57
           +++TI A++T    ++++I+R+SG     V E + + K+  P   R+  +RY        
Sbjct: 8   QEDTIAAIATAVGEASVAIVRVSGRGARDVGERLVRSKRGLPVKLRERGMRYGQVINPKS 67

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ++D+ +++  P P S+TGED  E  VHGG   V  +L    +    R+A PGEF++RA
Sbjct: 68  GDVIDEAIVLWMPGPHSYTGEDVLELQVHGGTYAVEEVLSACLEA-GARMAEPGEFTKRA 126

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLI ++T    +L+   + G           +L  + + +E  +D
Sbjct: 127 FLNGRIDLSQAEAVIDLIRAKTAFAGKLAERQVRGRFGEAVRALRRRLLELEAHVEVTID 186

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  DV++ +   V++    +  +I S I   +LG ++R+G    I+G  N GKSSL N
Sbjct: 187 YPEH-DVEDVACDHVVSVCEGMMGEIDSLIRSAELGRVLRDGVATAIVGRPNVGKSSLLN 245

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL ++D AIVTD+PGTTRDVL   ++L G  +++ DTAGIRET+D+VE+ G+ R+   ++
Sbjct: 246 ALVERDRAIVTDLPGTTRDVLEEYINLRGIPLRLIDTAGIRETEDVVERIGVARSRESMQ 305

Query: 298 NADLILLLKEIN---SKKEISFPKNID---FIFIGTKSD---------LYSTYTEEYDHL 342
            A+L+LL+ + +   S ++ +  +  D    I +  K D         L      E    
Sbjct: 306 KAELVLLVLDGSEPPSPEDEAIARESDGSRRIVVLNKIDRGIHAEAARLADELAPEGAVR 365

Query: 343 ISSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
           +S+  G GL+ L + I + +       L  S  ++ R    L +    L  A        
Sbjct: 366 VSAREGTGLDTLRDAIVNKIRRDLAIDLDASYMANHRQKRLLEEAKEDLRTARDAARAGA 425

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD++A  L+ A   LG+  G    E LL+ IFS+FC+GK
Sbjct: 426 TLDLVAVALQSAYGKLGETIGEEAGEDLLNEIFSRFCLGK 465


>gi|299752969|ref|XP_001832975.2| tRNA modification GTPase GTPBP3 [Coprinopsis cinerea okayama7#130]
 gi|298410084|gb|EAU88664.2| tRNA modification GTPase GTPBP3 [Coprinopsis cinerea okayama7#130]
          Length = 501

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 152/470 (32%), Positives = 247/470 (52%), Gaps = 34/470 (7%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-----KPFPRK-ASLRYFFGLD 57
           ++ TI+A+ T    + ++++R+SGP   +    + K        P P K    R     +
Sbjct: 33  QRSTIYALGTPPGKAGVAVVRVSGPDALETWRGMVKGSGGHETTPQPWKLKRCRIVHPQN 92

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  +D GL + F  P+SFT ED+ E H+H G AV+   L  L+  P  R A PGEF+RRA
Sbjct: 93  GETIDDGLAVFFKGPKSFTAEDTVELHLHSGPAVIAAALAALSTFPTCRPAAPGEFTRRA 152

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL + E L DLI + TE QR++++    G +   + +   ++    + +EA +D
Sbjct: 153 FLNGRMDLTQVEGLKDLIDAGTESQRKIALRAAEGAIREKFDELRQRIISALAKVEALID 212

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E E+++    ++  + +  + + I  +++  + GE++R+G ++ I G  NAGKSSL N
Sbjct: 213 FGEGEEIEEGVYEDARSQVTEVVDIIKGYLNDHRRGELLRSGIRLAIFGPPNAGKSSLLN 272

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            LA+++ AIVT IPGTTRD+L + LD+ G  V ++DTAG+R+TDD VE+ GI+R    V 
Sbjct: 273 ILARREAAIVTPIPGTTRDILELALDIGGLPVIVADTAGLRKTDDTVEQIGIERARKAVA 332

Query: 298 NADLILLLKEINSKKEISFPKNID-------FIFIGTKSDLYST-------------YTE 337
           N+D+ + +  +   + ++   N           F+  K+DL                  +
Sbjct: 333 NSDVSICVLSLPDLQNLTEDGNNWKELITPNTYFLLNKADLMPAQWRPDSAVLRELGVVQ 392

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPF-------SIPSHKRHLYHLSQTVRYL 390
           E   + S    +G E  ++   S L  +F             I + +RH  +L    R+L
Sbjct: 393 ERMWVSSLAKRDGFEVFLSGFASALQKQFGMSDDLTEATQSPIITRQRHRENLENATRFL 452

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E A L      +   AE LR A+ ++GK+TG + VE +LD +F  FCIGK
Sbjct: 453 ESA-LAYGPDDIVFAAEELRYAANAIGKVTGAIGVEDVLDAVFRDFCIGK 501


>gi|296137607|ref|YP_003644849.1| tRNA modification GTPase TrmE [Thiomonas intermedia K12]
 gi|295797729|gb|ADG32519.1| tRNA modification GTPase TrmE [Thiomonas intermedia K12]
          Length = 472

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/472 (33%), Positives = 249/472 (52%), Gaps = 35/472 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +  + + I A++T     A+ I+R SG S   + + I  +    PR A+   F    G +
Sbjct: 4   LAQDADPIVAIATAPGRGAVGIVRASGKSLGALAQAITGRAL-LPRHATYLPFGDGQGGV 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRA 117
           +D+GL + FP+P S+TGED  E  +HGG  V+  +L  L ++     LR+A PGEF+RRA
Sbjct: 63  IDRGLALFFPAPHSYTGEDVLELQIHGGPVVLQLLLARLLELGASSRLRVAQPGEFTRRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL +AES+ADLI + TE   R +   ++GELS        +L  +R  +EA LD
Sbjct: 123 FLNGKLDLAQAESVADLIEASTEAAARSATRALAGELSQAVRALAAELVELRLLVEATLD 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E ED+      +    +  L+  +    ++ + G ++R G ++V+ G  N GKSSL N
Sbjct: 183 FPE-EDIDFLRQAQAQRRLQALQQTLQQVQAKTRQGALLREGLQVVLAGQPNVGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           ALA  ++AIVT I GTTRD ++  + +EG  + I DTAG+R++ D VE+ G++R++  + 
Sbjct: 242 ALAGAELAIVTPIAGTTRDKVSQTIQIEGVPLHIVDTAGLRDSADAVERIGVERSWHAIA 301

Query: 298 NADLILLLKEIN---------SKKEIS--FPKNIDFIFIGTKSDLYSTYTEEY------- 339
            AD+++ L ++          ++ EI+   PK    + +  K D   T  +         
Sbjct: 302 GADVVVFLHDLTRLQAPGYAQAEAEIARGLPKGAPLLHVFNKRDCVETGAQARLLPQVWA 361

Query: 340 --------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                      IS+ TG+GL+ L  K+  +   +         + +RH+  L QT ++L 
Sbjct: 362 QWGVEAGESVWISAATGDGLQGLRLKLLQLAGAQPTS-EGVFIARQRHVQALEQTGQHLG 420

Query: 392 MA---SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A      +    LD++AE LRL+  +L  ITG    + LL  IFS FCIGK
Sbjct: 421 AALHLIELDAQAPLDLLAEELRLSHQALMAITGEYTPDDLLGAIFSSFCIGK 472


>gi|318040678|ref|ZP_07972634.1| tRNA modification GTPase TrmE [Synechococcus sp. CB0101]
          Length = 449

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/439 (30%), Positives = 234/439 (53%), Gaps = 17/439 (3%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVF 69
               +++I+R+SGP    + + +       P + S R  +G      +G  +D+ LL++ 
Sbjct: 15  PGEGSVAIVRVSGPEAEAIGQRLFSAPGDQPWE-SHRVLYGYVCDPANGERVDEALLLLM 73

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
            +P SFT E   EFH HGG+  V  +LE L  +   R A PGEFS+RAF NG++DL  AE
Sbjct: 74  RAPRSFTRETVVEFHCHGGLISVQRVLE-LVLVSGARRALPGEFSQRAFLNGRLDLTRAE 132

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++++L+++ +    +L+M G+ G L        ++L    + +EA +DF +  D+     
Sbjct: 133 AISELVTARSRRAAQLAMAGLDGGLQVRISALRERLLDQLAELEARVDFED--DLPPLDG 190

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
             V  ++  ++ D+   ++ G+ G+++R G ++ I+G  N GKSSL N L+  + AIVTD
Sbjct: 191 DAVALELQAVRTDLEQLVADGERGQLLREGLRVAIVGRPNVGKSSLLNRLSCSERAIVTD 250

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI- 308
           +PGTTRD++  +L L+G  + + DTAGIR T D VE+ GI+R+   ++ AD +LLL ++ 
Sbjct: 251 LPGTTRDLVESELVLQGVPLTLLDTAGIRATTDRVEQIGIERSRSALQVADAVLLLFDLS 310

Query: 309 ------NSKKEISFPKNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
                 ++      P+ +  + +G K+D L      + D  IS+ TG G  EL++++ + 
Sbjct: 311 AGWCDDDAALGELVPEGVPVLVVGNKADQLTGAPAVQADVCISALTGAGETELVHQLLAR 370

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
             +   +      + ++     +             +    D    +LR A  +LG+ITG
Sbjct: 371 CGHSDPQGVQLALNRRQQDLAAAAAASLSASLEAASQQLPWDFWTIDLRAAVRALGEITG 430

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               E +LD +FS+FCIGK
Sbjct: 431 EEVSEAVLDRVFSRFCIGK 449


>gi|311747167|ref|ZP_07720952.1| tRNA modification GTPase TrmE [Algoriphagus sp. PR1]
 gi|126578876|gb|EAZ83040.1| tRNA modification GTPase TrmE [Algoriphagus sp. PR1]
          Length = 460

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 152/454 (33%), Positives = 240/454 (52%), Gaps = 20/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLDGR-ILD 62
            +TI A++T     AI++IRLSG    ++   +   K        ++ +    DG  ++D
Sbjct: 9   NDTIIALATPQGVGAIAVIRLSGQDAIKLTNEVFFGKNLEKQDSHTIHFGTIRDGEKVID 68

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+ +F +P+SFT E+  E   HG   ++N +++ L     +R A  GEF++RAF NG+
Sbjct: 69  EVLVSLFIAPKSFTKENVVEISTHGSSYIINQVIK-LFLKKGVRPAKAGEFTQRAFLNGQ 127

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
            DL +AE++ADLI +++E     ++  M G  S       +KL H  S IE +LDF E E
Sbjct: 128 FDLAQAEAVADLIHADSEASHSAALSQMRGGFSGEIQVLREKLIHFASMIELELDFGE-E 186

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV+  S  E+   +  L   +   I    LG +I+NG   VI G  NAGKS+L NAL  +
Sbjct: 187 DVEFASRTELQELVERLLRVVEELILSFDLGNVIKNGVPTVIAGKPNAGKSTLLNALLNE 246

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD++  ++++ G + +  DTAG+RET D +E  G+ RT  +++ A LI
Sbjct: 247 EKAIVSDIAGTTRDLIEDEINIGGVIFRFIDTAGLRETTDTIEAIGVSRTQEKMKTASLI 306

Query: 303 LLLKEINSKKEISFPKN--------IDFIFIGTKSD-----LYSTYTEEYD--HLISSFT 347
           L L ++     +   ++        + F+ I  K D     L S    +Y     IS+  
Sbjct: 307 LYLFDLGDTDLVEINRDVNKLENLGVPFLKIANKLDKANPELVSELKSKYPDTIFISAGN 366

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIA 406
            E LE L  KI  +++    K   +I ++ RH   L +T    L++    +     D +A
Sbjct: 367 KENLEGLKVKILELVNLDKFKTGNTIVTNVRHYDSLIKTRDSLLDILRGIDDQITNDFVA 426

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++R +   LG+ITG +  + LL  IFSKFCIGK
Sbjct: 427 MDIRRSLHYLGEITGEITTDDLLANIFSKFCIGK 460


>gi|217077738|ref|YP_002335456.1| tRNA modification GTPase TrmE [Thermosipho africanus TCF52B]
 gi|217037593|gb|ACJ76115.1| tRNA modification GTPase TrmE [Thermosipho africanus TCF52B]
          Length = 441

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 152/445 (34%), Positives = 249/445 (55%), Gaps = 14/445 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A+S+     AIS++R+ GP    + + + K      R+     F   +G+I+D+ 
Sbjct: 2   FDTIAAISSPLGTGAISVVRIDGPKSHDIAKKLVKISNVDYRRV-YHAFMEFEGQIVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
            ++ + SP S+TG D  E + HGGI V   +LE + K    RLA  GEF++RAF NGKI 
Sbjct: 61  NIVFYKSPNSYTGNDLVEIYGHGGILVTRKVLEAVLKS-GARLAERGEFTKRAFLNGKIS 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++AES+  +I +++E+  +LS E + G+LS     +  +L +I + IE  +D+ ++ +V
Sbjct: 120 LVQAESIYQIIEAKSEISLKLSFENLKGKLSEEIENYRSRLLNILAEIEVSIDYPDDMEV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              +   +L+    +  ++S  I   K    +  G  + I+G  N+GKS+L N L ++D 
Sbjct: 180 DFDNIFNLLSK---IDQELSLKIENSKKALTLNKGIVMAIVGKPNSGKSTLLNKLLEEDR 236

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRDV+  ++D+ G    I DTAGIRETDD+VE  GI+++  E+E AD++L 
Sbjct: 237 AIVTDIPGTTRDVIKGEIDINGIHFVIVDTAGIRETDDVVESIGIQKSIKELEKADIVLF 296

Query: 305 LKEINS----KKEISFP--KNIDFIFIGTKSDLYSTYTEEY--DHLISSFTGEGLEELIN 356
           + +  +    + E  F   K +++I +  K D+ + + +E+     IS+ TGE    L +
Sbjct: 297 VLDSTTGFTKEDEYIFEKVKKLNYIPVWNKCDIGNNFNKEFKDAVKISALTGESFRSLES 356

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASVS 415
            I S +S+  +    S    +R L  L +  R +E A  N K    +D+++ ++R A   
Sbjct: 357 MILSKVSDIIESGESSHVITQRQLEVLERVKRNVESAIFNLKSGYEVDVVSIDIRKALEE 416

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           L  + G    + LLD IFS FC+GK
Sbjct: 417 LDVLIGKRFSDDLLDTIFSNFCVGK 441


>gi|298384325|ref|ZP_06993885.1| tRNA modification GTPase TrmE [Bacteroides sp. 1_1_14]
 gi|298262604|gb|EFI05468.1| tRNA modification GTPase TrmE [Bacteroides sp. 1_1_14]
          Length = 465

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 148/470 (31%), Positives = 237/470 (50%), Gaps = 35/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-----KKKKPFPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP    +   I       K     +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGSIRVSGPEAISITSRIFQPAKAGKLLSEQKPYTLTFGRI 57

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            +G  I+D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE++
Sbjct: 58  YNGEEIIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE 
Sbjct: 117 QRAFLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFSE EDV+      +      ++  IS  +    +G  I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSE-EDVEFADRSALRKLADEIEQVISRLVHSFNVGNAIKNGVPVAIIGETNAGKST 235

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF 
Sbjct: 236 LLNVLLNEDKAIVSDIHGTTRDVIEDTINISGITFRFIDTAGIRETNDTIESLGIERTFQ 295

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEE------- 338
           +++ A+++L + + +         S+K I   +    I +  K+DL     +E       
Sbjct: 296 KLDQAEIVLWMVDSSDASSQIKQLSEKIIPRCEEKQLIVVFNKADLIEEKQKEELSALLK 355

Query: 339 -------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                      IS+   +  +EL   + +            I ++ RH   LS+ +  + 
Sbjct: 356 NFPKEYTKSIFISAKERKQTDELQKMLINAAHLPTVTQNDIIVTNVRHYEALSKALDAIH 415

Query: 392 MASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 +     D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 416 RVQDGLDSHISGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|166714251|ref|ZP_02245458.1| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 446

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 148/449 (32%), Positives = 236/449 (52%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +    +  PR A    F    G +
Sbjct: 1   MSSSTSTIVAIASAAGTGGVGIVRLSGPQSRQIAVQL-GVARLQPRHAHYARFRDAQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S         LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSRRVDAVAHTLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E +      +V + +   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 -EPLDTLGGNQVRDGLTQARTLLAQLLRDAERGRTLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297

Query: 301 LILLLKEINSKKEISFPKNIDFI------FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +                 +I  K DL S     +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDPRVAREAIGDAIDAVPRQLWIHNKCDLLSDAAPLDVNAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++ +   +  + +     +  RH+  L +  R+++ A L      L++ AE LRL
Sbjct: 358 QLHIRLRELAFGDGVESVDGEFSARTRHVEALRRAERHVDAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKISADDLLGKIFSSFCIGK 446


>gi|84626025|ref|YP_453397.1| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|123520413|sp|Q2NX54|MNME_XANOM RecName: Full=tRNA modification GTPase mnmE
 gi|84369965|dbj|BAE71123.1| tRNA modification GTPase trmE [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 446

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/449 (32%), Positives = 237/449 (52%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +    +  PR A    F    G +
Sbjct: 1   MSSSTSTIVAIASAAGTGGVGIVRLSGPQSRQIAVQL-GVARLQPRHAHYARFRDAQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++AD+I++      R +   + G  S         LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADVIAAGDLRAARAARRALDGVFSRRVDAVAHTLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E +      +V + +   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 -EPLDTLGGNQVRDGLTQARTLLAQLLRDAERGRTLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E AD
Sbjct: 238 GSERAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297

Query: 301 LILLLKEINSKKEISFPKNIDFI------FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +                 +I  K DL S     +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDPQAARAAIGDAIDAVPRQLWIHNKCDLLSDAAPLDVNAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++ + L +  + +     +  RH+  L +  R+++ A L      L++ AE LRL
Sbjct: 358 QLHIRLRELALGDGVEGVDGEFSARTRHVEALRRAERHVDAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKISADDLLGKIFSSFCIGK 446


>gi|146300457|ref|YP_001195048.1| tRNA modification GTPase TrmE [Flavobacterium johnsoniae UW101]
 gi|205829142|sp|A5FGE0|MNME_FLAJO RecName: Full=tRNA modification GTPase mnmE
 gi|146154875|gb|ABQ05729.1| tRNA modification GTPase TrmE [Flavobacterium johnsoniae UW101]
          Length = 466

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 152/466 (32%), Positives = 251/466 (53%), Gaps = 31/466 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL---DG 58
            +++I A++T +   AI++IR+SG     +   + K  K K   ++ +     G    +G
Sbjct: 3   NQDSIVALATPSGAGAIAVIRISGAEAVSIGNSVFKSIKNKDLTKQKTHTLHLGHIVDNG 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + LD+ L+ VF  P S+TGED+ E   HG   +   I  +L      R+A+ GEF+ RAF
Sbjct: 63  KTLDEVLVSVFKGPNSYTGEDTIEISCHGSTYIQQQI-IQLLLRKGCRMADAGEFTLRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLISS+ E    ++M+ M G  S+   +  ++L +  S IE +LDF
Sbjct: 122 LNGKLDLSQAEAVADLISSDNEASHHIAMQQMRGGFSNEIAKLREELLNFASLIELELDF 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E EDV+     +    +  ++  +   I    +G +I+NG  + I+G  N GKS+L NA
Sbjct: 182 AE-EDVEFADRTQFHELLNRIEFVLKRLIDSFAVGNVIKNGIPVAIVGEPNVGKSTLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIV+DI GTTRD +  +L + G   +  DTAGIRET D+VE  GIK+TF +++ 
Sbjct: 241 LLNEERAIVSDIAGTTRDTIEDELVIGGIGFRFIDTAGIRETKDVVESIGIKKTFEKIDQ 300

Query: 299 ADLILLLKE-----INSKK---EISFPKN----IDFIFIGTKSDLYS-----TYTEEYDH 341
           A +++ L +      +S +   EI   KN       + +  K D+ S       T++ ++
Sbjct: 301 AQVVIYLFDGLKFKASSSEFVSEIEQIKNKYPLKPLLIVVNKKDILSEDEVLNITQKLEN 360

Query: 342 LI------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
           L       S+    G+EEL N++ S ++    +   +I ++ RH   L + +  ++    
Sbjct: 361 LNAKLLLISAKQKIGVEELKNELLSFVNTGALRNNETIVTNTRHYDSLLKALDEIQKVKF 420

Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E +   D+IA +++ A    G ITG V  ++LL  IF+ FCIGK
Sbjct: 421 GLETNLSSDLIALDIKEALYQFGLITGQVSNDELLGNIFANFCIGK 466


>gi|255011872|ref|ZP_05283998.1| tRNA modification GTPase TrmE [Bacteroides fragilis 3_1_12]
 gi|313149706|ref|ZP_07811899.1| tRNA modification GTPase TrmE [Bacteroides fragilis 3_1_12]
 gi|313138473|gb|EFR55833.1| tRNA modification GTPase TrmE [Bacteroides fragilis 3_1_12]
          Length = 465

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 145/470 (30%), Positives = 240/470 (51%), Gaps = 35/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP    +   I    KP       +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGSIRVSGPEAITITSRIFTPAKPGKLLSEQKPYTLTFGRI 57

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            +G  ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R A PGE++
Sbjct: 58  YNGEELIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRTAQPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL++  M G  S       +KL +  S IE 
Sbjct: 117 QRAFLNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELAILREKLLNFTSMIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFSE EDV+      +      ++  I+  +    +G  I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSE-EDVEFADRSALRQLADGIEKVIARLVDSFSVGNAIKNGVPVAIIGETNAGKST 235

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D++E  GI+RTF 
Sbjct: 236 LLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDMIESLGIERTFQ 295

Query: 295 EVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYST----------- 334
           +++ A+++L + +           S K +   ++   I +  K +L +            
Sbjct: 296 KLDQAEIVLWIIDSADAISQLKLLSDKILPRCEHKQLILVFNKVELINETQKNELTSQLS 355

Query: 335 ---YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
               +E     IS+   +  +EL  K+ +            I ++ RH   L++ +  + 
Sbjct: 356 EHVGSEIESIFISAKQRQHTDELQQKLVAAAHLPTVTQNDVIVTNVRHYEALTRALDAIH 415

Query: 392 MASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 + +   D +++++R     L  I G V  + +L  IF+ FCIGK
Sbjct: 416 RVQEGLDANISGDFLSQDIRECIFHLSDIVGEVTNDMVLQNIFAHFCIGK 465


>gi|282877893|ref|ZP_06286702.1| tRNA modification GTPase TrmE [Prevotella buccalis ATCC 35310]
 gi|281299894|gb|EFA92254.1| tRNA modification GTPase TrmE [Prevotella buccalis ATCC 35310]
          Length = 469

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 140/452 (30%), Positives = 233/452 (51%), Gaps = 20/452 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP------FPRKASLRYFFGLDGRI 60
           TI A+ST A   AI++IRLSG     + + +   K         P+     +    DG +
Sbjct: 20  TICALSTPAG-GAIAVIRLSGNDAINIADKVFVSKSNHRLTEAKPQTLHFGHLTNQDGEV 78

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ VF SP S+TGE++ E   HG   V++ IL+   +    R ANPGE+++RAF N
Sbjct: 79  IDEVLVSVFRSPHSYTGENAVEISCHGSQYVISQILKTFIQ-NGCRQANPGEYTQRAFMN 137

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI+S      +++M  + G  S       ++L  I S +E +LDFS+
Sbjct: 138 GKMDLSQAEAVADLIASTNRATHQMAMSQLKGHFSDELALLRNQLLKITSLLELELDFSD 197

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+++     E+L+    +   + +     + G+  + G  + I+G +N GKS+L N L 
Sbjct: 198 HEELEFADRTELLDLAQTIDQRLYTLARSFETGKAYKQGVAVAIVGKTNVGKSTLLNQLL 257

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIV++I GTTRDV+    +++G   +  DTAGIR T+D +E+ GI+RT+ ++  A 
Sbjct: 258 KEEKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTAGIRSTNDEIERLGIERTYKKLNEAR 317

Query: 301 LILLLKE-----INSKKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFTGEG 350
           +IL L +        ++ + + ++   I +  K D+ +     +        IS+  G  
Sbjct: 318 IILWLVDEQPNRSEIQEMLEYCEDKQVILVQNKIDIRTIPDKLSTNNLSTIQISAKLGTN 377

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENL 409
           + +L N +    +         I +  RH   L      +       K D   D+IAE+L
Sbjct: 378 IGQLENLLYQKANIPEITENDVIITSARHYDALIHAKESITRVINGLKADLSGDLIAEDL 437

Query: 410 RLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           R+    L  IT G +   ++L+ IF  FCIGK
Sbjct: 438 RVCLDQLADITGGQITTPEVLENIFKHFCIGK 469


>gi|325854323|ref|ZP_08171522.1| tRNA modification GTPase TrmE [Prevotella denticola CRIS 18C-A]
 gi|325484117|gb|EGC87051.1| tRNA modification GTPase TrmE [Prevotella denticola CRIS 18C-A]
          Length = 510

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/452 (28%), Positives = 218/452 (48%), Gaps = 20/452 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP--FPRKASLRYFF----GLDGRI 60
            I A++T     AI I+R+SG    +V + I + KK             +      DG  
Sbjct: 61  PICALATQPG-GAIGIVRVSGEGALEVTDRIFRSKKRKHLTEAGGYTLHYGEILDKDGET 119

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  L+ VF +P S+TGEDS E   HG   ++N +++ L K    R A PGE+++RA+ N
Sbjct: 120 IDDVLVSVFRAPHSYTGEDSTEIACHGSAYILNKVVQVLIKA-GCRQAQPGEYTQRAYLN 178

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      ++++  + G  SS   Q   +L  + S +E +LDFS+
Sbjct: 179 GKMDLSQAEAVADLIAASNRASHQIALSQLKGHFSSELSQLRKQLLKMTSLLELELDFSD 238

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+++     E+      + N I +     + G  ++ G  + I+G +N GKS+L N L 
Sbjct: 239 HEELEFADRSELKVLAEKIHNRIITLTESFETGNALKRGIPVAIIGKTNVGKSTLLNCLL 298

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV++I GTTRD +    +++G   +  DTAG+R TDD +E+ GI+R + +++ A 
Sbjct: 299 HEEKAIVSNIHGTTRDTIEDTTEIQGVTFRFIDTAGLRHTDDQIEQLGIRRAYAKLDEAS 358

Query: 301 LILLLKEINSKKEIS-----FPKNIDFIFIGTKSDLYSTYTEEYD-----HLISSFTGEG 350
           ++L + +     E         +    I +  K D         +       IS+   + 
Sbjct: 359 IVLWVVDRQPTTEERMEMRHLTEEKKLITVFNKMDTMPAAARCPEVNPQVIYISAKLKQN 418

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENL 409
           +  L   I      +       I +  RH   LS     +        D    D+I+E+L
Sbjct: 419 ITALETAIYEAAGLQTINENSVIITSARHYDALSHADESILRVINALNDGLSGDLISEDL 478

Query: 410 RLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           R+    L  IT G +   ++L  IF  FCIGK
Sbjct: 479 RICLDQLADITGGQITTHEVLGNIFKNFCIGK 510


>gi|238650604|ref|YP_002916456.1| tRNA modification GTPase TrmE [Rickettsia peacockii str. Rustic]
 gi|238624702|gb|ACR47408.1| tRNA modification GTPase TrmE [Rickettsia peacockii str. Rustic]
          Length = 445

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 155/449 (34%), Positives = 246/449 (54%), Gaps = 19/449 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDKG 64
           ETIFA S+    + +++ R+SGP   +V + +  +K    R    +         ++D  
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKDFKSRLMYYQQITVPETKELIDNV 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F SP SFTGED  E H HG  A+   +   L  +  +RLA  GEF++RAF N K D
Sbjct: 62  MVVYFKSPGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKFD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE +ADLI++ET MQ + ++   SG+L +LY  W  +L  I S +EA +DF + ED+
Sbjct: 122 LTAAEGIADLINAETIMQHKQAIRQASGKLEALYNNWRSQLLKIISLLEAYIDFPD-EDI 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +    EV N    L N IS +++  + GE++R+G K+ I+G  N GKSSL N L ++D+
Sbjct: 181 PDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDI 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIV++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + AD+ +
Sbjct: 241 AIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTADIKI 300

Query: 304 LLKEINSKKEISFPKNIDFIFIGT------------KSDLYSTYTEEYDHLISSFTGEGL 351
           ++ +   K + S  ++I  +                 S ++S   +     +S      L
Sbjct: 301 IMFDA-EKLDSSINEDIINLIDENTIIIINKIDLIEASKIFSIENKYKCLRVSVKNNIAL 359

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
             ++  I++I  N          +++RH  +L Q + +L   SL   D  L +  E++R+
Sbjct: 360 SSILKNIENIAENMAGFTEIPYITNQRHRNYLQQALSHLTAFSL---DNDLVLATEDIRM 416

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +G ITG ++VE++L  IF  FCIGK
Sbjct: 417 TVRCIGAITGVINVEEILGEIFKNFCIGK 445


>gi|258512903|ref|YP_003186337.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479629|gb|ACV59948.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 465

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 142/460 (30%), Positives = 239/460 (51%), Gaps = 25/460 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-----RKASLRYFFGL-D 57
           +++TI A++T    +++ I+R+SG     V E + + K+  P     R            
Sbjct: 8   QEDTIAAIATAVGEASVGIVRVSGRGARDVGERLVRSKRGLPVKLGERGMRYGQVIDPKS 67

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ++D+ +++  P P S+TGED  E  VHGG   V  +L    +    R+A PGEF++RA
Sbjct: 68  GDVIDEAIVLWMPGPHSYTGEDVLELQVHGGTYAVEEVLLACLEA-GARMAEPGEFTKRA 126

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLI ++T    +L+   + G           +L  + + +E  +D
Sbjct: 127 FLNGRIDLSQAEAVIDLIRAKTAFAGKLAERQVRGRFGEAVRALRRRLLELEAHVEVTID 186

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  DV++ +   V++    +  +I + I   +LG ++R+G    I+G  N GKSSL N
Sbjct: 187 YPEH-DVEDVACDHVVSVCEGMMGEIDALIRSAELGRVLRDGVATAIVGRPNVGKSSLLN 245

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL +++ AIVTD+PGTTRDVL   ++L G  +++ DTAGIRET+D+VE+ G+ R+   ++
Sbjct: 246 ALVERERAIVTDLPGTTRDVLEEYINLRGIPLRLIDTAGIRETEDVVERIGVARSRQSMQ 305

Query: 298 NADLILLLKEIN---SKKEISFPKNID---FIFIGTKSD---------LYSTYTEEYDHL 342
            A+L+LL+ + +   S ++ +  +  D    I +  K D                E    
Sbjct: 306 EAELVLLVLDGSEPPSPEDEAIARESDGSRRIVVLNKVDRGIHPDAARFADELAPEGAVR 365

Query: 343 ISSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDC 400
           +S+  G GL+ L + + + +       L  S  ++ R    L +    L  A    +   
Sbjct: 366 VSAREGTGLDTLRDAMVNKIRRDLAIDLDASYMANHRQKRLLEEAKEDLRTARDAAQAGA 425

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD++A  L+ A   LG+  G    E LL+ IFS+FC+GK
Sbjct: 426 TLDLVAVALQSAYEKLGETIGEEAGEDLLNEIFSRFCLGK 465


>gi|307566127|ref|ZP_07628585.1| tRNA modification GTPase TrmE [Prevotella amnii CRIS 21A-A]
 gi|307345315|gb|EFN90694.1| tRNA modification GTPase TrmE [Prevotella amnii CRIS 21A-A]
          Length = 447

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 140/446 (31%), Positives = 235/446 (52%), Gaps = 14/446 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD--GRILDKG 64
           TI A++T     AI +IR+SG     +   I  K        +L Y   +D  G+++D+ 
Sbjct: 4   TICALATLPG-GAIGVIRVSGKDAIVIVNRIFSKDILSMPANTLCYGNIIDMAGKVIDEV 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ ++ +P S+TGE++ E   HG   ++  +L  L +      A PGEF++RA+ NGK+D
Sbjct: 63  VVSIWHAPHSYTGENAVEISCHGSAYILKEVLHLLIEA-GCYQALPGEFTQRAYLNGKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADL++S  +   RL++  M G  S+       +L  I S +E +LDFSE ED+
Sbjct: 122 LSQAEAVADLVASSNKASYRLALSQMKGHFSNELSSLRKRLLKITSLLELELDFSEHEDL 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +     E+++    +   + S +   K+G+ ++ G  + I+G +N GKS+L NAL  ++ 
Sbjct: 182 EFADRTELISLTDEIDKKVLSLLHSFKIGQALKEGVAVAIIGKTNVGKSTLLNALLGEER 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV++I GTTRDV+    ++ G   +  DTAGIR+T D VEK GI+RT+  ++ A +++ 
Sbjct: 242 AIVSNIEGTTRDVIEDVTEINGISFRFIDTAGIRQTTDEVEKLGIERTYKMLDKAQMVIW 301

Query: 305 LKEIN-SKKEISFPKN----IDFIFIGTKSDLY---STYTEEYDHLISSFTGEGLEELIN 356
           + + N S+KE    K       FI +  K D               +S+  G  +EEL  
Sbjct: 302 VIDDNPSRKEYEDIKKKVGERPFIIVRNKVDTIVNKEALPSFITLSVSAKEGTNIEELKQ 361

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVS 415
            I    +         I ++ RH   L++    L    +  + +   D++AE+L+     
Sbjct: 362 AIYKKANIPAFNENSVIVTNARHYDVLTKAHEALCRVHNAFKANLPGDLVAEDLKDVLSL 421

Query: 416 LGKITG-CVDVEQLLDIIFSKFCIGK 440
           LG+ITG  +  ++ L+ IF  FCIGK
Sbjct: 422 LGEITGTQISSQETLNNIFKHFCIGK 447


>gi|205422419|sp|Q2WBH0|MNME_MAGMM RecName: Full=tRNA modification GTPase mnmE
          Length = 441

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 162/445 (36%), Positives = 259/445 (58%), Gaps = 14/445 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            ETI+A+++ A  + I++ RLSG         +  K  P PR+A         G +LD G
Sbjct: 2   SETIYALASAAGRAGIAVWRLSGEGSGTALSALTGKPLPEPRRARRVRLRDGAGEVLDDG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP+P SFTGED AE H+HGG AV   +   L ++  LR A PGEFSRRAF NGK+D
Sbjct: 62  LVLWFPAPHSFTGEDVAELHLHGGRAVAAALTARLGEL-GLRPAEPGEFSRRAFLNGKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE++ADL+ +ET  QRR ++  + G L+ L   W   L    + +EA +DF++ ED+
Sbjct: 121 LTRAEAIADLVDAETAAQRRQALRQLDGGLAGLVEGWRSALVRAMAHLEAVIDFAD-EDI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +   ++ + ++  L+ ++  H+ + + GE +R+G  I ILG  NAGKSSL N LA ++ 
Sbjct: 180 PDTLLEQSVGEVRSLRREMEVHLDERRNGERLRDGIHITILGAPNAGKSSLLNRLAGREA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+   GTTRDV+ + LDL G+ V ++DTAG+R++   +E EG++R       ADL L 
Sbjct: 240 AIVSAQAGTTRDVIEVHLDLGGWPVIVADTAGLRDSACEIESEGVRRAADRAAKADLRLC 299

Query: 305 LKEINSKKEISFPK----NIDFIFIGTKSDLY-----STYTEEYDHLISSFTGEGLEELI 355
           + +      +        +   + +  K DL      ++        +S+  GEG+++L+
Sbjct: 300 VFDGTLYPNLDAATLEMIDDATLVVLNKRDLMTGETPASINGRPVLTLSAKAGEGVDDLV 359

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
            ++  ++ ++F      + + +RH   +++ V  L      +   G+++ AE+LRLA+ S
Sbjct: 360 AELARVVESRFAMGSAPVLTRERHRVAVAEAVAALSRF---DPGLGIEMAAEDLRLAARS 416

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG+ITG VDVE++LD+IF +FCIGK
Sbjct: 417 LGRITGRVDVEEILDVIFHEFCIGK 441


>gi|86747518|ref|YP_484014.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris HaA2]
 gi|123099260|sp|Q2J357|MNME_RHOP2 RecName: Full=tRNA modification GTPase mnmE
 gi|86570546|gb|ABD05103.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris HaA2]
          Length = 460

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 164/464 (35%), Positives = 251/464 (54%), Gaps = 28/464 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA+++G LPSA++I+R+SG     V   +     P PR         ++  +
Sbjct: 1   MHPNDQTIFALASGRLPSALAIVRVSGARARDVLAALTG-ALPPPRTVRRVRIRDVNHEL 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ F +P S TGED AEFH+HGG AV+  +++ LA   ++R A PGEF+RRAFEN
Sbjct: 60  IDDAVVLWFAAPASATGEDVAEFHIHGGRAVLAALVKALASFDDVRPAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++TE QRRL++  + G L     +W  ++    + IEA +DF++
Sbjct: 120 GKLDLTEAEGLDDLIHADTEAQRRLAVRQLGGLLGDRARRWRAQIIEALALIEAGIDFAD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DVQ       L  I  L  +I+  ++     E +R+G  + I G  N GKS+L N LA
Sbjct: 180 EGDVQGELMAPALRTIATLHGEIAEVLAAQGKSERLRDGLVVAIAGPPNVGKSTLINRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++VAIV+   GTTRDV+ + LDL GY V + DTAGIRE++D VE+EG++R       AD
Sbjct: 240 RREVAIVSPHAGTTRDVIEVQLDLGGYPVTLIDTAGIRESEDSVEQEGVRRAKARAAEAD 299

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYS-----------------------TYTE 337
           L+L L   +   +++   +     +  K DL                             
Sbjct: 300 LVLWLG-ADEAIDVAVEGSAPVWRVRNKIDLVPQADTVGADSGGAGLAANLWQTEGNVAA 358

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKF-KKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                IS+  G+G+ +++  +    +  F      ++ S +RH   L Q    L  +   
Sbjct: 359 REAFGISAKRGDGVGDMVEALAGFAAQYFAASGEAAVISRERHRLLLQQAEVMLRCSMT- 417

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 +++AE LRLA+ +LG++ G VDVE +L  IF +FCIGK
Sbjct: 418 -VGLAPELVAEELRLAAGALGRLLGRVDVEDVLGEIFGRFCIGK 460


>gi|62185497|ref|YP_220282.1| tRNA modification GTPase TrmE [Chlamydophila abortus S26/3]
 gi|81312355|sp|Q5L4W0|MNME_CHLAB RecName: Full=tRNA modification GTPase mnmE
 gi|62148564|emb|CAH64336.1| probable tRNA modification GTPase TrmE [Chlamydophila abortus
           S26/3]
          Length = 443

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 149/447 (33%), Positives = 225/447 (50%), Gaps = 16/447 (3%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILD 62
           + +TI A++T     +I+I+R+SGP   Q+ + I     P     +        +G+ +D
Sbjct: 3   KNDTIAAIATPPGEGSIAIVRISGPEAIQITDKIFSGSVPSFSSHTAHLGTVSYNGQQID 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LL++  +P SFTGED  E   HGG    + IL  L      R A PGEFS+RAF NGK
Sbjct: 63  QTLLLIMRAPRSFTGEDVVELQCHGGYFSCSQILAALI-AEGARPALPGEFSQRAFLNGK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AE++ ++I+++      ++     G  S    Q    +    +FIE   DF EEE
Sbjct: 122 IDLIQAEAIQNIIAADNLDAFHIAQNHFQGHFSKKVQQISSLIIESLAFIEVLADFPEEE 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                     L++ + + +D+   I+    G+ +  G  IV+ GH NAGKSSL NAL  K
Sbjct: 182 QPDMQEPMNRLHEAILIIDDL---IASFDQGQRLAQGTSIVLAGHPNAGKSSLLNALTNK 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDIPGTTRD+L  +  L+G  +++ D+AG RET + +E+EGI+R    +E ++ I
Sbjct: 239 NRAIVTDIPGTTRDILEENWMLQGKRIRLIDSAGQRETHNPIEQEGIERAIAAMEASEAI 298

Query: 303 LLLKEINSK----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI---SSFTGEGLEELI 355
           L + + +       EI   K    + +  KSDL +    E        S+ TG G+ EL 
Sbjct: 299 LWVMDASQPPPPLPEILMRK--PSLLLWNKSDLATPPHLETTLPQLAVSAKTGAGMIELK 356

Query: 356 NKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLAS 413
             I+  +   +  K         RH   L     YL  A    +     + IA  LR A 
Sbjct: 357 QFIQQWMQKQQLGKNGKVFLISSRHHTILQHMRTYLLSAQEGLQSQSPPEFIALELRQAL 416

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + G ++G    E +L  IFS+FCIGK
Sbjct: 417 QTTGNLSGSEINETILGEIFSRFCIGK 443


>gi|242278542|ref|YP_002990671.1| tRNA modification GTPase TrmE [Desulfovibrio salexigens DSM 2638]
 gi|242121436|gb|ACS79132.1| tRNA modification GTPase TrmE [Desulfovibrio salexigens DSM 2638]
          Length = 483

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 138/456 (30%), Positives = 221/456 (48%), Gaps = 24/456 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRYFFGLDGRIL 61
           TI A++T      + IIR+SG     + + I    K       P           D   +
Sbjct: 30  TIAAIATPPGDGGVGIIRISGEQALSIAKDIFHPAKDSFSGFKPYTMHYGTIVDADSVEI 89

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  L +  P P S+TGED+ E + HGG A+++ +L E+      RLAN GEF+ RAF NG
Sbjct: 90  DDVLTVFMPGPNSYTGEDTVEINCHGGRAILSAVLGEVL-AKGARLANAGEFTLRAFLNG 148

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++A++I + +    +L+   +SG L         +L  +R+ +   +DF E+
Sbjct: 149 RMDLTQAEAVAEMIHAPSRGAAQLAKVKLSGVLGERISGLRLRLEELRAQLCVAVDFPED 208

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E ++    +++ +++     +IS  +S  +  +  R G   V+ G  NAGKSSL NAL  
Sbjct: 209 E-LECLPLEQMQSEVGDAVKNISEILSGVERTKAWREGGLAVLSGKVNAGKSSLLNALLG 267

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDIPGTTRD +   L+L+G  V++ DTAG+RET D VE  G+         ADL
Sbjct: 268 RNRAIVTDIPGTTRDFIEETLNLDGLQVRVVDTAGLRETSDAVELAGVDMGRDLASQADL 327

Query: 302 ILLLKEINSKKEISFPKNIDFIF------IGTKSDLYSTYTEEYDHLI---------SSF 346
           +LL+ + +    ++               +  KSDL          +          S+ 
Sbjct: 328 VLLIIDGSKPFALADLDPQFADMADKCLAVINKSDLEQADPSPAVIMRESGYEVVEISAK 387

Query: 347 TGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDCGLDI 404
            G+G+E L   I+  IL    +  P  +  + R    L +  V   E+          D+
Sbjct: 388 KGQGIERLAALIREHILQGAGEPDPDELVPNSRQAASLKKAHVELEELMGDIAMQVPYDL 447

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   L  A  SL +ITG +  +++L+ IF  FC+GK
Sbjct: 448 LGVRLESACSSLSEITGEITPQEVLNSIFENFCVGK 483


>gi|319936667|ref|ZP_08011080.1| tRNA modification GTPase mnmE [Coprobacillus sp. 29_1]
 gi|319808224|gb|EFW04789.1| tRNA modification GTPase mnmE [Coprobacillus sp. 29_1]
          Length = 444

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/446 (32%), Positives = 241/446 (54%), Gaps = 12/446 (2%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI-LD 62
             + I A++T  L +AISIIRLSG  C    +     +       ++ Y +  D +  +D
Sbjct: 2   NDDIIVAIATSRLEAAISIIRLSGKDCIAFVQSFFTGQIKNKESHTITYGYIKDDQKRID 61

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+ ++    +FTGE+  E + HGG+ +   +L    K    R+A  GEFS+RAF NG+
Sbjct: 62  EVLVNIYRGHRTFTGEEMVEINCHGGVFITQKVLNLCLK-KGARMAEHGEFSKRAFLNGR 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL +AE+++DLI+++ +    L+++G+ G +S       + L  I + IE ++D+ E E
Sbjct: 121 IDLSQAEAISDLITAKNDYATELALKGIQGNISHFIEDLREDLIKIITQIEVNIDYPEYE 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV+  ++  +L     LK  ++  I   +   ++++G   VI+G  N GKSSL NAL  +
Sbjct: 181 DVEELTADSLLPKSQLLKEKMNHIIESSQNVHLLKDGISTVIIGKPNVGKSSLLNALLNE 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVTDI GTTRD++   + L+  ++ + DTAGIRET+DIVE  G+ ++   +  ADL+
Sbjct: 241 DKAIVTDIAGTTRDIVEGTIRLDNIILNMIDTAGIRETNDIVENIGVNKSKELIHKADLV 300

Query: 303 LLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           LL+ + +S+      + I   ++ + I +  K D    Y  E D +  S     +E LIN
Sbjct: 301 LLVLDSSSELTKEDYELIELSQDTNRIIVMNKKDQGIKY--ELDGIFISAKDNEIESLIN 358

Query: 357 KIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASV 414
           +IK +    K       I ++ R +  L +  + LE A    E +   D+I  +L  +  
Sbjct: 359 EIKKMFELGKITAGQEDILANARQIQLLEKARQSLENAIEAMENNVPTDLIVTDLYESWE 418

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L +I G    E LLD +F +FCIGK
Sbjct: 419 NLKEILGERAKEDLLDELFKRFCIGK 444


>gi|225164330|ref|ZP_03726597.1| tRNA modification GTPase TrmE [Opitutaceae bacterium TAV2]
 gi|224801064|gb|EEG19393.1| tRNA modification GTPase TrmE [Opitutaceae bacterium TAV2]
          Length = 508

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/487 (30%), Positives = 236/487 (48%), Gaps = 54/487 (11%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T A  SAI++IR SGP+C ++   +     P PR+A+   +  + G++LD  L
Sbjct: 24  DTIAALATPAGTSAIAVIRASGPACAELVAALFPPSPPLPRRATHVDYHDVAGKLLDDVL 83

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +  F  P S+TGEDS E   HG   +   IL +L +    R A  GEF+RRAF NG+IDL
Sbjct: 84  VTWFRGPRSYTGEDSLEIACHGNPLIAQLILADLFQR-GCRPAEAGEFTRRAFLNGRIDL 142

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ DLI + +E     + + + G L        D L  + + IEA +DF + ED+ 
Sbjct: 143 SQAEAVMDLIHARSERALAAANQQLRGSLGRHLATLTDALLLVLARIEAYIDFPD-EDLP 201

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +   + V +++  +    +  ++  + GE++R G K VI+G  NAGKSSL N L  +D A
Sbjct: 202 DEDRRIVADELASVLRGTNQLLATSRYGELLREGIKTVIIGEPNAGKSSLLNRLVGRDRA 261

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           +V+  PGTTRD +   + +  + +++ DTAG+  T   +EK GI +T      ADL L +
Sbjct: 262 LVSPEPGTTRDFIEELIIIGPHALRLIDTAGLNPTPGAIEKLGIDKTLERAAEADLFLWV 321

Query: 306 KEINSKKEISFPKN------IDFIFIGTKSDLYSTYT----------------------- 336
           ++         P+        + I +  K+DL    T                       
Sbjct: 322 QDATLPSPALPPEIAARLTPANAIILRNKTDLLERRTSNIERPTSNVQGPVSNAQPNPMQ 381

Query: 337 ---------------------EEYDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIP 374
                                 E    +S+ TG G +EL + I ++     +      I 
Sbjct: 382 GTDGEAAHSMLDVRCSMFDVRREASLSVSALTGAGFDELASAITTLADALAQTTGDELIA 441

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
            + RH   L + +  L  A L        +++A +LR A  +LG+I G +D E++LD +F
Sbjct: 442 INARHADALRRALDCLTAAQLKLSSVAPTELLASDLRGALDALGEIAGKIDNERMLDHLF 501

Query: 434 SKFCIGK 440
           + FCIGK
Sbjct: 502 ATFCIGK 508


>gi|150024725|ref|YP_001295551.1| tRNA modification GTPase TrmE [Flavobacterium psychrophilum
           JIP02/86]
 gi|205829151|sp|A6GXB2|MNME_FLAPJ RecName: Full=tRNA modification GTPase mnmE
 gi|149771266|emb|CAL42735.1| tRNA modification GTPase TrmE [Flavobacterium psychrophilum
           JIP02/86]
          Length = 462

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 145/461 (31%), Positives = 244/461 (52%), Gaps = 27/461 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDG-R 59
            +TI A++T +   AI++IR+SG +   +   +      K     +  +L      DG +
Sbjct: 4   HDTIVALATPSGAGAIAVIRISGNNAITIASEVFQSVSGKDITKQKSHTLHLGHITDGTK 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ LL +F    S+TGE++ E   HG   +   I  +L      R+A  GEF+ R+F 
Sbjct: 64  VLDQVLLSIFKGTNSYTGENTIEISCHGSTYIQQQI-IQLLLRKGCRMAQAGEFTLRSFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLISS+ E   +++M+ M G  S+   +  ++L +  S IE +LDF+
Sbjct: 123 NGKMDLSQAEAVADLISSDNEAAHQIAMQQMRGGFSNEIAKLREELLNFASLIELELDFA 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV+     +  + +  ++  +   I    +G +I+NG  + I+G  N GKS+L N L
Sbjct: 183 E-EDVEFADRTQFDDLLNRIEFVLKRLIDSFAVGNVIKNGIPVAIVGEPNVGKSTLLNTL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV++I GTTRD +  +L + G   +  DTAGIRET D+VE  GIK+TF ++E +
Sbjct: 242 LNEERAIVSEIAGTTRDTIEDELVIGGIGFRFIDTAGIRETKDVVESIGIKKTFEKIEQS 301

Query: 300 DLILLLKEINS--------KKEISFPKNI----DFIFIGTKSDLYSTYTEEYDHL----- 342
            +++ L + +         K  +   KN       I IG KSD  S    +         
Sbjct: 302 QVVVFLFDSSEFKISGLKLKVALEKIKNQFPLKPLIIIGNKSDKLSETEIQNIKTEIPEI 361

Query: 343 --ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-D 399
             IS+    G+E+L N++ S ++    +   +I ++ RH   L + +  ++      + +
Sbjct: 362 LLISAKEKLGVEDLKNQLLSFVNTGALRNNQTIVTNTRHYDSLLKALDEIQKVKFGLQTN 421

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D++A +++ A    G+ITG V  ++LL  IF+ FCIGK
Sbjct: 422 LPSDLMAIDIKQALYYFGEITGQVTNDELLGNIFANFCIGK 462


>gi|327313587|ref|YP_004329024.1| tRNA modification GTPase TrmE [Prevotella denticola F0289]
 gi|326945796|gb|AEA21681.1| tRNA modification GTPase TrmE [Prevotella denticola F0289]
          Length = 510

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/452 (29%), Positives = 218/452 (48%), Gaps = 20/452 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP--FPRKASLRYFF----GLDGRI 60
            I A++T     AI I+R+SG    +V + I + KK             +      DG  
Sbjct: 61  PICALATQPG-GAIGIVRVSGEGALEVTDRIFRSKKGKHLTEAGGYTLHYGEILDKDGET 119

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  L+ VF +P S+TGEDS E   HG   ++N +++ L K    R A PGE+++RA+ N
Sbjct: 120 IDDVLVSVFRTPHSYTGEDSTEIACHGSAYILNKVVQVLIKA-GCRQAQPGEYTQRAYLN 178

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      ++++  + G  SS   Q   +L  + S +E +LDFS+
Sbjct: 179 GKMDLSQAEAVADLIAASNRASHQIALSQLKGHFSSELSQLRKQLLKMTSLLELELDFSD 238

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+++     E+      + N I +     + G  ++ G  + I+G +N GKS+L N L 
Sbjct: 239 HEELEFADRSELKVLAEKIHNRIITLTESFETGNALKRGIPVAIIGKTNVGKSTLLNCLL 298

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV++I GTTRD +    +++G   +  DTAGIR TDD +E+ GI+R + +++ A 
Sbjct: 299 HEEKAIVSNIHGTTRDTIEDTTEIQGVTFRFIDTAGIRHTDDQIEQLGIRRAYEKLDEAS 358

Query: 301 LILLLKEINSKKEIS-----FPKNIDFIFIGTKSDLYSTYTEEYD-----HLISSFTGEG 350
           ++L + +     E         +    I +  K D         +       IS+   + 
Sbjct: 359 IVLWVVDRQPTTEERMEMRHLTEEKKLITVFNKMDTMPAAARCPEVNPQVIYISAKLKQN 418

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENL 409
           +  L   I      +       I +  RH   LS     +        D    D+I+E+L
Sbjct: 419 ITALETAIYEAAGLQTINENSVIITSARHYDALSHADESILRVINALNDGLSGDLISEDL 478

Query: 410 RLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           R+    L  IT G +   ++L  IF  FCIGK
Sbjct: 479 RICLDQLADITGGQITTHEVLGNIFKNFCIGK 510


>gi|90194130|gb|ABD92626.1| ThdF [Mannheimia varigena]
          Length = 436

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 141/439 (32%), Positives = 228/439 (51%), Gaps = 21/439 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP    V E +  KK   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRVSGPLAETVAEAVVGKKL-QPRLANYLPFKDEDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ + ++  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDLLLKRILQVKGVRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+     +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINALVDDVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   +     + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 EAKLNDIIAQLDGVRREAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+  AD +LL+ +   + 
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIARAWDEIAQADHVLLMIDSTEQT 298

Query: 313 E-----------ISFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLEELI 355
                          P N+    I  K DL                 +S+ T  G++ L 
Sbjct: 299 ADQFRNEWADFLAKLPANMPVTVIRNKVDLSGEPEGLIQVEDFTMIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFLARRRHLQALETAADHLERGHIQLTQFFAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDIIF 433
           +L +ITG    + LL  IF
Sbjct: 418 ALSEITGQFTSDDLLGNIF 436


>gi|298372710|ref|ZP_06982700.1| tRNA modification GTPase TrmE [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275614|gb|EFI17165.1| tRNA modification GTPase TrmE [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 464

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 139/459 (30%), Positives = 237/459 (51%), Gaps = 27/459 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-------KKPFPRKASLRYFFGLDGR 59
           TI AVST +    I+++R+SG   F + + I          ++  P   S       D  
Sbjct: 8   TICAVSTASGVGGIAVLRISGKEAFDIVDKIFVPVGRKASLREQNPYTVSYGKIVDADNS 67

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D  L+ VF  P SFTGE+  E   HG I +   IL  L       LA PGEF++RAF 
Sbjct: 68  IVDNVLVSVFKEPHSFTGENVVEIACHGSIYIQQAIL-RLLVDNGCVLATPGEFTKRAFV 126

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            GK+DL +AE++ADLI+S ++   ++++  M G  S+      ++L +  S IE +LDFS
Sbjct: 127 GGKMDLSQAEAVADLIASTSKASHQMAIRQMRGGFSAELALLREQLLNFVSLIELELDFS 186

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV+    +E+ +    ++  I+  ++  K+G +I+NG  + ++G +N GKS+L N+L
Sbjct: 187 E-EDVEFADREELKSLADSIERRIAELVASFKIGNVIKNGVPVALVGKTNVGKSTLLNSL 245

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV+D+ GTTRD +   + ++G   +  DTAGIR T D VE  GI+RT+ +++ A
Sbjct: 246 LNEERAIVSDVHGTTRDSIEDSIVIDGVTFRFIDTAGIRTTTDEVENLGIERTYRKIDEA 305

Query: 300 DLILLLKEINSKKEI--SFPKN----IDFIFIGTKSD----------LYSTYTEEYDHLI 343
           +++L + +     +I     +N       I +  K D          L+S      +++ 
Sbjct: 306 EIVLWIVDATQTSDIKEDIEQNSLNLSKTILVINKLDKISDDEYQKILHSVENLNVEYIF 365

Query: 344 SSFTG-EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
            S      ++ L   +   ++     +   I ++ RH   L++    +   +   E    
Sbjct: 366 ISAKQRMNIDRLHKMLIDKMNLNKIDIDAVIVNNVRHYEALTRASEAIMRVTEGLESGIS 425

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D+++ ++R     LG+ITG +  +++L+ IF KFCIGK
Sbjct: 426 GDLLSLDIRDCMHYLGEITGQISTDEILNNIFGKFCIGK 464


>gi|302035744|ref|YP_003796066.1| tRNA modification GTPase [Candidatus Nitrospira defluvii]
 gi|300603808|emb|CBK40140.1| tRNA modification GTPase [Candidatus Nitrospira defluvii]
          Length = 476

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 151/474 (31%), Positives = 234/474 (49%), Gaps = 41/474 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--------------------KKKPF 44
            +TI A++T      I ++R+SG     V   + +                         
Sbjct: 6   DDTICAIATPPGEGGIGVVRISGLHACDVASQVVRLRSGKSLHDLRTHVMALADVGSPGA 65

Query: 45  PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN 104
            R    R      G +LD+ L++V   P S+TGED  E   HGG  V++ +   L     
Sbjct: 66  TRAVPYRTESRPHG-VLDEALVVVMRGPHSYTGEDVVEVQCHGGPVVLDQLCRSLISA-G 123

Query: 105 LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK 164
            RLA PGEF++RAF NG++DL +AE++ D I ++T     ++     GELS    +    
Sbjct: 124 ARLAEPGEFTKRAFLNGRLDLAQAEAVLDTIRAKTARSLAIAQSQRRGELSREVEETRSG 183

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L    + IEA LDF+E ED+      E+L  +      +   +  G+ G I R G  + I
Sbjct: 184 LVVALAHIEAALDFAE-EDIAFVRQDELLRLLDETLIKLRGLVQSGEEGRIWREGAAVAI 242

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           LG  N GKSSL NAL + D AIVT IPGTTRD+L   +++ G  V++ DTAGIR TDD V
Sbjct: 243 LGRPNVGKSSLMNALLRSDRAIVTPIPGTTRDLLEEVVNIHGIPVRLFDTAGIRTTDDPV 302

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE 338
           E EGI+R+ L  E+ADL L+L + +          +   +    + +  K DL S  ++E
Sbjct: 303 ETEGIRRSHLAWEDADLALILLDSSQPMLESDLLLLRRSEAARALLVLNKCDLPSRISKE 362

Query: 339 ----------YDHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTV 387
                         IS+    GL+ L + I S L     +     + ++ RH     + +
Sbjct: 363 DLTRVCPVSAGLFEISAKMHIGLDGLRDAISSRLMPRGLESREGVLVTNLRHAAAFERAL 422

Query: 388 RYLEMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +E A    +     +++A +LR+A+ +LG+ITG +  +++L+ IF++FCIGK
Sbjct: 423 QGVEQARQSVDAGRAGELVAMDLRIAADALGEITGAITTDEILERIFAEFCIGK 476


>gi|73666665|ref|YP_302681.1| tRNA modification GTPase TrmE [Ehrlichia canis str. Jake]
 gi|123615194|sp|Q3YT72|MNME_EHRCJ RecName: Full=tRNA modification GTPase mnmE
 gi|72393806|gb|AAZ68083.1| tRNA modification GTPase trmE [Ehrlichia canis str. Jake]
          Length = 441

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 165/444 (37%), Positives = 248/444 (55%), Gaps = 17/444 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+ T    S +++IR+SG    +            PR A+  + +   G I+D+ ++
Sbjct: 5   TIFALCTPWGKSGVAVIRVSGKDAAKAFLHFGISSSIKPRTATFAHLYNSKGEIIDEVII 64

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F +P SFTGED  EFH HG +AV+  IL EL K+     A PGEFS RAF N K+DL 
Sbjct: 65  VYFVAPSSFTGEDVVEFHTHGSLAVIKMILAELGKI--FVPAGPGEFSLRAFLNNKVDLT 122

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
            AE++ DLI+SETEMQ + ++  MSG L  LY  W  +L  I S IEA +DF EE +   
Sbjct: 123 RAEAIVDLINSETEMQAKQAIRQMSGALEKLYQSWRQQLIDILSNIEAYIDFPEEVNSAA 182

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            ++   L  +  L+  +  H++  + GE +R G  I I+G  N+GKS+LFN LAK+D+AI
Sbjct: 183 LANIGYL--LNNLQESLECHLNDDRKGERLRQGIYIAIVGEPNSGKSTLFNHLAKRDIAI 240

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           V++  GTTRD L   +D+ GY + I DTAGIR++ D++E+EGI+R  L+ ENAD  +++ 
Sbjct: 241 VSEYAGTTRDTLEAHIDVAGYPIVIIDTAGIRDSADLIEQEGIRRAKLKAENADFKIVML 300

Query: 307 EINSK----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-----SSFTGEGLEELINK 357
               +     EI    +   I + +K+D  + +             S     G+E L+N 
Sbjct: 301 PYEKRNVFNNEIMNLIDEKSICVLSKADNITEHELISIFNFSFVPISVCCNRGIEILLNL 360

Query: 358 IKSILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           IK  +   F+        + +R   H+  T   L +    + +  ++I+AE+LRL+   L
Sbjct: 361 IKQRVEKDFQFCSTHPFITSERQRLHIQNT---LNIVKNMDLELPMEIVAEDLRLSVREL 417

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           GK+ G +  E +LD +F KFCIGK
Sbjct: 418 GKVVGVISDEDILDNVFGKFCIGK 441


>gi|306821555|ref|ZP_07455153.1| tRNA modification GTPase TrmE [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550300|gb|EFM38293.1| tRNA modification GTPase TrmE [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 457

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 155/459 (33%), Positives = 244/459 (53%), Gaps = 24/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDG 58
           ++ ETI A +T    S+++IIRLSG     V E I   KK      PR+    +    D 
Sbjct: 2   YDNETIVAPATSTGRSSVNIIRLSGDKSLAVAESIFMPKKYKISENPRRMIYGHILDGD- 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +I+D+ ++    +P SFT ED  E + HGG   +  I+  L     +RLA  GEF++RAF
Sbjct: 61  KIIDEVMVCYMRAPHSFTCEDVVEINCHGGSKSLEEIMS-LILTKGVRLAQNGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I++++      +   + G LS    +  ++L    + I   +DF
Sbjct: 120 LNGRIDLSQAEAVIDVINAKSTKSFENAQRQLQGRLSGRIEKIDERLKKSIAQITVAIDF 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E ED+   + +E+++++    +++++     K G++I +G  I I+G  N GKSSL N 
Sbjct: 180 PE-EDIPEVTYEELISNVDISIDELNTLKDTYKNGKVISDGISIAIIGRPNVGKSSLLNE 238

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDI GTTRD++T  L + G  V + DTAGIRET D+VEK G++R+   +EN
Sbjct: 239 LLEENRAIVTDIAGTTRDIITESLSINGISVNLIDTAGIRETQDVVEKIGVERSMSSIEN 298

Query: 299 ADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDHLI 343
           AD+ILL+ +         K+ +   ++  ++ +  KSDL S             E    I
Sbjct: 299 ADIILLVLDTSDKLNAEDKELMEKLRDRHYLILLNKSDLQSNLDINDLPDFIDRENIINI 358

Query: 344 SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
           S+    G+EEL   I    +S     +   + ++ RH   +   +  L+ A      +  
Sbjct: 359 STLDKRGIEELKENIYTKAVSFDDDSINNIMITNSRHYALIENAINSLKDARQSLLDNVE 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LDI+  +   A   LG+ITG    E LLD IFSKFCIGK
Sbjct: 419 LDILEIDFLNAVDYLGQITGLSVSESLLDTIFSKFCIGK 457


>gi|160887320|ref|ZP_02068323.1| hypothetical protein BACOVA_05338 [Bacteroides ovatus ATCC 8483]
 gi|156107731|gb|EDO09476.1| hypothetical protein BACOVA_05338 [Bacteroides ovatus ATCC 8483]
          Length = 465

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/466 (31%), Positives = 232/466 (49%), Gaps = 33/466 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFPRKASLRYFFGLDG- 58
           ++TI A++T     AI  IR+SGP    +   I K  K        +  +L +    DG 
Sbjct: 3   QDTICAIATAQG-GAIGNIRVSGPEAISITGSIFKPAKAGKLLSEQKPYTLTFGRIYDGD 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE+++RAF
Sbjct: 62  EMIDEVLVSLFRTPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI+S +    RL+M  M G  S       +KL +  S IE +LDF
Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           SE EDV+      +      ++  IS       +G  I+NG  + I+G +NAGKS+L N 
Sbjct: 181 SE-EDVEFADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLNV 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET+D +E  GI+RTF +++ 
Sbjct: 240 LLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLDQ 299

Query: 299 ADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY---------- 339
           A+++L + +           S+K I   +    I +  K+DL     +E           
Sbjct: 300 AEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEGKQKEDLLSLLKDFPK 359

Query: 340 ----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                  IS+   E   EL   +              I ++ RH   L++ +  +     
Sbjct: 360 ESTESIFISAKQRENTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQN 419

Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +     D +++++R     +  I G V  + +L  IF  FCIGK
Sbjct: 420 GLDSQISGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465


>gi|94676628|ref|YP_588606.1| tRNA modification GTPase TrmE [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|166200469|sp|Q1LTV8|MNME_BAUCH RecName: Full=tRNA modification GTPase mnmE
 gi|94219778|gb|ABF13937.1| tRNA modification GTPase TrmE [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 457

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/459 (36%), Positives = 247/459 (53%), Gaps = 21/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI A +T      I I+R+SG    +V + +   K P  RKA    F+  +G I
Sbjct: 1   MNLTFDTIAAQATPNGRGGIGIVRVSGTLTTRVAKELLG-KVPIQRKAEYLTFYHQNGNI 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +DKG+ + FP P SFTGED  E H HGG  V++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 60  IDKGIALFFPGPNSFTGEDILELHGHGGPVVLDLLLQRIITLPGVRIARPGEFSERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            KIDL +AE++ADLI + +    R ++  + G  S+     ++KLT +R  IEA ++F E
Sbjct: 120 EKIDLAQAEAIADLIDANSAQAARAAISSLQGVFSTTINDLVEKLTSLRVDIEAKINFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E +      K+++ ++      I+   +    G I+R G KIVI G  N GKSS+ NALA
Sbjct: 180 ENETNVSIDKKIIANLDQAILSINKIRTAAYQGCILREGIKIVITGKPNVGKSSIINALA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENA 299
             +VAIVT+I GTTRD+L   + L+G  V I DTAG+   + + VEK GI+R + E++ A
Sbjct: 240 GHEVAIVTNIAGTTRDILREYIYLDGIPVSIIDTAGLCNVSHNEVEKIGIQRAWNEIKQA 299

Query: 300 DLILLLKEINSKK-----------EISFPKNIDFIFIGTKSDLYSTYTEEY------DHL 342
           D ILL+ + ++ K             +FP       I  K+D+      E          
Sbjct: 300 DHILLVVDSSTTKLSEQDKLCNTLIANFPYKTPVTIIRNKADITGEKIGETLNNNYSVIT 359

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCG 401
           IS+ +  G+E L+  +  I+ +          + +RHL  L  T  YL            
Sbjct: 360 ISALSSLGIEILLKYLTKII-SLPSSTEGVFLARRRHLEALEITANYLLQCKEKISFPTM 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L++IAE+L+LA  +L +ITG     +LL  IFS+FC+GK
Sbjct: 419 LELIAEDLQLAHNALSQITGKFSSHELLKKIFSRFCLGK 457


>gi|291515475|emb|CBK64685.1| tRNA modification GTPase trmE [Alistipes shahii WAL 8301]
          Length = 451

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/454 (32%), Positives = 230/454 (50%), Gaps = 17/454 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LD 57
           MN + +TI A +T A   AI++IR+SG   F VC+ I + ++P          +G     
Sbjct: 1   MNTDHDTIVAPATAAG-GAIAVIRISGGEAFAVCDRIFRGRRPLAEADGYTVHYGTIAEG 59

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            R++D  L  VF +P S+TGE+S E   HG   +V+ IL  L      R+A PGEF+ RA
Sbjct: 60  DRVIDDVLAAVFRAPHSYTGENSVEISCHGSSYIVSEILRLLIAAGG-RMAQPGEFTIRA 118

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           +  GK+DL +AE++AD+I+S +     L+   M G  S       +KL ++ S +E +LD
Sbjct: 119 YLAGKLDLSQAEAVADMIASSSRAAHALASTQMRGGYSEELESLREKLLNLTSLLELELD 178

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE EDV+      +   +  +  +I    S   LG  IR G  + I G  N GKS+L N
Sbjct: 179 FSE-EDVEFADRTALRATMQRIAAEIDRLRSSFALGNAIREGVAVAIAGAPNVGKSTLLN 237

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ A+V++I GTTRDV+    ++ G L +  DTAGIR TDD +E+ GI+RT   +E
Sbjct: 238 RLLNEERAMVSEIAGTTRDVIEECANIGGVLFRFLDTAGIRPTDDRLEQMGIQRTMSSIE 297

Query: 298 NADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGE 349
            A +++ + + ++        +         + +  K+D         E    IS+  GE
Sbjct: 298 RARIVIHMVDASTLTGPVPAPDFPLRPGQKLLTVVNKTDKAPAAWRLPEGVVGISAKHGE 357

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAEN 408
           G++ L + ++  +  +       + S+ RH   LS     L  A          D+++E 
Sbjct: 358 GIDALCDALRESVDTEALYHGDPVVSNSRHYEALSAAREALGQALDGLAHGLPTDLLSEE 417

Query: 409 LRLASVSLGKITGC--VDVEQLLDIIFSKFCIGK 440
           +R     L  ITG   +  +++L  IFSKFCIGK
Sbjct: 418 IRQVITHLSAITGRGAIAPDEILQNIFSKFCIGK 451


>gi|73986022|ref|XP_541954.2| PREDICTED: similar to GTP binding protein 3 (mitochondrial) isoform
           V isoform 1 [Canis familiaris]
          Length = 492

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 169/461 (36%), Positives = 244/461 (52%), Gaps = 30/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYF-FGLDGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R A LR          LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRSLTASRDLPPARSACLRLLSHPHSREPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCAEFHVHGGSAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W   LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCHGWAKTLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    +   + +  L+  +S+H+   + G+ +R+G  IV+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLERANSQVRELELALSAHLRDARRGQRLRSGAHIVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+   +SDTAG+RE    VE+EG++R    +E ADLIL 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGAGPVEQEGVRRARQRLEQADLILA 334

Query: 305 LKEINSKKEIS-----------------FPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342
           + +       S                    +   + +  KSDL      +         
Sbjct: 335 VLDATDLASPSSRSFLDTVVVPAGAGSPSENSQRLLLVLNKSDLLPRGGPDLSPHLPPHL 394

Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKD 399
            +S  TGEGL+ L+  ++  L+           + +  RH +HL   +  L      +  
Sbjct: 395 LLSCLTGEGLDGLLEALRKELAEVCGDPSTGPPLLTRARHQHHLQGCLDALSHYKQTKDL 454

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                     RLA   L +ITG  D E++LDIIF  FC+GK
Sbjct: 455 ALAAEAL---RLARGHLARITGGGDTEEILDIIFRDFCVGK 492


>gi|303235717|ref|ZP_07322324.1| tRNA modification GTPase TrmE [Prevotella disiens FB035-09AN]
 gi|302484164|gb|EFL47152.1| tRNA modification GTPase TrmE [Prevotella disiens FB035-09AN]
          Length = 460

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 133/451 (29%), Positives = 234/451 (51%), Gaps = 18/451 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63
           ETI A++T     AI +IR+SG    ++ + I  K        +L Y      D + +D+
Sbjct: 12  ETICALATQPG-GAIGVIRISGSKAIEIVDSIFSKSILNATANTLHYGEIIDKDQQTIDE 70

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            ++ ++ +P S+TGED+ E   HG   ++  +L  L +    + A PGE+++RA+ NGK+
Sbjct: 71  VVVSLWRAPHSYTGEDAVEISCHGSAYILEQVLHRLIEA-GCQQAKPGEYTQRAYLNGKM 129

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL + E++ADLI+S  +   +L++  + G  SS      ++L  I S +E +LDFS+ E+
Sbjct: 130 DLSQTEAVADLIASTNKASYKLALSQLKGHFSSELSTLREQLLKINSLLELELDFSDHEE 189

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     E+      + + +++     K G+ ++NG  + I+G +N GKS+L N L + +
Sbjct: 190 LEFADRTELKELANEIDSKVTTLARSFKTGQALKNGIPVAIIGKTNVGKSTLLNRLLRDN 249

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV+DI GTTRDV+   + + G      DTAGIR+T D VE+ GI+RT  E++ A ++L
Sbjct: 250 RAIVSDIHGTTRDVIEDSISINGVDFLFIDTAGIRKTTDYVEQLGIERTLAELQKAQIVL 309

Query: 304 LLKE-----INSKKEISFPKNIDFIFIGTKSD----LYSTYTEEYDHLISSFTGE---GL 351
            + +        ++ I+   +   I +  K D       T +E   +   + +G+   G+
Sbjct: 310 WVVDQEPTEAEKEEIITQCTDKQLILVRNKVDDLPETTPTLSENQTYHEIAISGKYNLGI 369

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLR 410
           + L + I  +          +I ++ RH   L++    L         +   D+I+E+L+
Sbjct: 370 DRLESLIYKVADLPELTENTTIITNARHYDALTRAHASLLRVQEAMAMNLSGDLISEDLK 429

Query: 411 LASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440
                LG+ITG  +  ++ L  IF  FCIGK
Sbjct: 430 DTIAILGEITGNQITSQETLHNIFKHFCIGK 460


>gi|222152198|ref|YP_002561358.1| tRNA modification GTPase TrmE [Macrococcus caseolyticus JCSC5402]
 gi|222121327|dbj|BAH18662.1| tRNA modification GTPase TrmE [Macrococcus caseolyticus JCSC5402]
          Length = 454

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 146/441 (33%), Positives = 234/441 (53%), Gaps = 23/441 (5%)

Query: 22  IIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPSPESFT 76
           I+RLSG     + + + K K      AS    +G         I+++ ++ V  +P ++T
Sbjct: 15  IVRLSGNDAISIADKLYKGKHQLSDVASHTINYGHIIDPASNEIIEEVMVAVMRAPRTYT 74

Query: 77  GEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLIS 136
            ED  E + HGGI  VN +LE LA     RLA PGEF++RAF NG+IDL +AE+  D I 
Sbjct: 75  REDIVEINCHGGIMTVNRVLE-LALTNGARLAEPGEFTKRAFLNGRIDLSQAEATMDFIR 133

Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI 196
           S+T+   R++M+ + G LS L       +  I + +E ++D+ E +DV+  ++  ++ + 
Sbjct: 134 SKTDRASRVAMQQIEGRLSVLIKGLRQSILEILAQVEVNIDYPEYDDVEEATNTFLMEEA 193

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             ++  I++ +     G+I+R G   VI+G  N GKSS+ N L + + AIVT+I GTTRD
Sbjct: 194 RKIEGSITNLLQTANQGKILREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEIAGTTRD 253

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----- 311
           VL   +++ G  +++ DTAGIRET+DIVEK G++R+   ++ ADLIL +   N       
Sbjct: 254 VLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSREALKKADLILYVLNNNEILTEED 313

Query: 312 -KEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHLISSFTGEGLEELINKIKSI 361
            K     KN D I I  K+DL +    E              S  + +G+EEL  +I+++
Sbjct: 314 YKLAEIIKNEDVIVIINKTDLETKLDLEEVKTMVGNAPIVRTSMLSQQGIEELEEQIRTL 373

Query: 362 LS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKI 419
               +      +  S+ RH+  L      +  A S  E    +D+I  +L      LG++
Sbjct: 374 FFAGEVSNQDMTYVSNARHISLLKSAKTSIGDAISAAELGVPVDMIQIDLIKTWELLGEV 433

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
            G    + L+D +FS+FC+GK
Sbjct: 434 IGESVDDGLIDQLFSQFCLGK 454


>gi|325926224|ref|ZP_08187582.1| tRNA modification GTPase trmE [Xanthomonas perforans 91-118]
 gi|325543406|gb|EGD14831.1| tRNA modification GTPase trmE [Xanthomonas perforans 91-118]
          Length = 446

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 148/449 (32%), Positives = 238/449 (53%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +    +  PR A    F    G +
Sbjct: 1   MSSSASTIVAIASAAGIGGVGIVRLSGPQSVQIAAQL-GIARMQPRHAHYARFRDGQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFHAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       D LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSRRVDAVADTLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E +      ++ + +   +N ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 -EPLDTLGGNQLRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297

Query: 301 LILLLKEINSKKEISFPKNIDFI------FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +                 +I  K DL       +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDPQAARDAIGDAVDAVPRQLWIHNKCDLLGNAASLDANAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++++ L +    +     +  RH+  L +  ++++ A L      L++ AE LRL
Sbjct: 358 QLHIRLRALALGDGVDSVEGEFSARTRHVQALRRAEQHVDAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446


>gi|330443937|ref|YP_004376923.1| tRNA modification GTPase TrmE [Chlamydophila pecorum E58]
 gi|328807047|gb|AEB41220.1| tRNA modification GTPase TrmE [Chlamydophila pecorum E58]
          Length = 443

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 154/447 (34%), Positives = 225/447 (50%), Gaps = 16/447 (3%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGRILD 62
             +TI A++T     +I+++RLSGP    +   +  K     P            G I+D
Sbjct: 3   TNDTIAAIATPPGEGSIAVVRLSGPQAIAIANKVFSKNIVDLPTHTVHLGTVSSQGVIID 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LLI+  +P SFTGED  E   HGG      ILE L      R A PGEFS+RAF NGK
Sbjct: 63  QVLLIIMRAPRSFTGEDVIEIQCHGGYFSCTQILEALL-NEGARGALPGEFSQRAFLNGK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AE++ +LI+S+      ++   + G  S    + +D +    +FIE   DF EEE
Sbjct: 122 IDLIQAEAIQNLIASDNLDAYHIAQGHLQGRFSQKIQEVVDIIFEALAFIEVLADFPEEE 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                  +  +   L +   +S  +     G+ +  G  I++ G  N GKSSL NAL +K
Sbjct: 182 QPSLEIPESNIQKALAM---VSEFLDSFDEGQRLAQGTSIILAGEPNVGKSSLLNALTQK 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDIPGTTRD+L     L+G  +++ DTAG R+T+D++E+EGI R  + +E+A  I
Sbjct: 239 NRAIVTDIPGTTRDILEESWTLQGKRIRLIDTAGQRDTNDLIEQEGINRARMAMESAQGI 298

Query: 303 LLLKEINSKK----EISFPKNIDFIFIGTKSDLYST---YTEEYDHLISSFTGEGLEELI 355
           L + +    +    EI F K+     I  K DL +     T   +  IS+ TGEG+ EL 
Sbjct: 299 LWVMDATRPQNPLPEILFSKS--TFLIWNKIDLAAPKKFNTNLPELAISTKTGEGILELK 356

Query: 356 NKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLAS 413
             ++  L      K         RH   L      L+ A          + IA++LR A 
Sbjct: 357 TALQQWLQKESSGKSSKVFLVSSRHQSILQTIQSNLKAAQDKLLSQQPPEFIAQDLRHAL 416

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++G ++G    E +L  IFSKFCIGK
Sbjct: 417 YAIGNLSGSEVTEAVLREIFSKFCIGK 443


>gi|126662354|ref|ZP_01733353.1| tRNA modification GTPase [Flavobacteria bacterium BAL38]
 gi|126625733|gb|EAZ96422.1| tRNA modification GTPase [Flavobacteria bacterium BAL38]
          Length = 471

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 149/470 (31%), Positives = 244/470 (51%), Gaps = 36/470 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVC----EFICKKKKPFPRKASLRYFFGLD--- 57
           +ETI A++T +   AI+IIRLSG +   +     + +  K     +  ++     +D   
Sbjct: 4   QETIVALATPSGAGAIAIIRLSGAAAITIAADVFQSVSGKDITKQKTHTIHLGHIVDAST 63

Query: 58  -----GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
                G++ D+ LL +F  P S+TGE+  E   HG   +   I  +L      ++A  GE
Sbjct: 64  SSGQAGKVYDQVLLSIFKGPNSYTGENVIEISCHGSTFIQQQI-IQLLLRKGAKMAQAGE 122

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+ RAF NGK+DL +AE++ADLI+S+ E   +++M+ M G  S+   +  ++L +  S I
Sbjct: 123 FTLRAFLNGKLDLSQAEAVADLIASDNEASHQIAMQQMRGGFSNEIAKLREELLNFASLI 182

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E +LDF+E EDV+     +    +  ++  +   I    +G +I+NG  + I+G  N GK
Sbjct: 183 ELELDFAE-EDVEFADRTQFHELLERIEFVLKRLIDSFAVGNVIKNGIPVAIVGEPNVGK 241

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           S+L NAL  ++ AIV+DI GTTRD +  +L + G   +  DTAGIRET D+VE  GI++T
Sbjct: 242 STLLNALLNEERAIVSDIAGTTRDTIEDELVINGMSFRFIDTAGIRETKDVVESIGIQKT 301

Query: 293 FLEVENADLILLLKEIN--------SKKEISFPKN------IDFIFIGTKSDLYST---- 334
           F ++E A ++L + +             +I F K          + I  K+DL S     
Sbjct: 302 FEKIEQAQVVLFILDGRWMMEAGSLEAVKIEFEKIKNKFPLKPVVVIANKADLLSADQKN 361

Query: 335 ---YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
               T E    +S+   EG++EL N + S ++    +   +I ++ RH   L + +  ++
Sbjct: 362 NIQATIENILFLSAKQKEGIDELKNTLLSFVNTGALRNNETIVTNTRHYDSLLKALEEVQ 421

Query: 392 MASLNEK-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                       D++A ++R A    G+ITG V  ++LL  IF+ FCIGK
Sbjct: 422 KVKWGLNSGLSSDLMAIDIRSALYFFGEITGEVTNDELLGNIFANFCIGK 471


>gi|254445762|ref|ZP_05059238.1| tRNA modification GTPase TrmE [Verrucomicrobiae bacterium DG1235]
 gi|198260070|gb|EDY84378.1| tRNA modification GTPase TrmE [Verrucomicrobiae bacterium DG1235]
          Length = 452

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 143/450 (31%), Positives = 230/450 (51%), Gaps = 17/450 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDKG 64
           +T+ A++T A  SAI++IR++G  C Q+        K+P PR AS   +      +LD  
Sbjct: 5   DTVAALATPAGESAIAMIRVTGGLCEQIANDAFGLAKRPAPRHASHGSYRSASKEVLDDV 64

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +   F  P+S+TGED  E   HG   +   +LE+L +    R + PGEF+RRAF NG++D
Sbjct: 65  VYTFFSGPKSYTGEDVLEICCHGNPLIATRVLEDLLER-GCRQSEPGEFTRRAFLNGRMD 123

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ +LI + ++   R++   + G       Q   +L    + +EA +DF + ED+
Sbjct: 124 LTQAEAVMELIQARSDRGIRVANNQLRGHFGKQLEQLKQRLLATVATVEAYIDFPD-EDL 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                +  +  I  +    S  I  GK    +R+G K +ILG  NAGKSSL N L   + 
Sbjct: 183 PPERKEAEIEAIRAVLTFCSRIIDSGKYAAFLRDGVKTLILGEPNAGKSSLMNCLLGFER 242

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV++ PGTTRD +   + ++G+ +++ DTAG+RE +  +E++GI++T    E ADL LL
Sbjct: 243 AIVSEEPGTTRDFIRERVIVDGHCLQLMDTAGLREAESGIERQGIQKTVELSEEADLFLL 302

Query: 305 LKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGLE 352
           + +                   + I +  KSDL   +             +++ +GEGL 
Sbjct: 303 VLDGTLPSPALPDSVAKRITAKNCIVVRNKSDLGERHPLSEQLCGLEQLSMAAISGEGLL 362

Query: 353 ELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLR 410
           EL  +I  ++           I  + RH   L +    L  A  N E     + +A  LR
Sbjct: 363 ELRERIVKMIDAHLAHDRDDLILVNARHSAALKELAECLASAIRNFEAGEPAEFVASELR 422

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  ++G++ G +D E +LD++FS FCIGK
Sbjct: 423 GAIEAIGRVLGRIDNEDVLDVLFSSFCIGK 452


>gi|149280420|ref|ZP_01886540.1| tRNA modification GTPase TrmE [Pedobacter sp. BAL39]
 gi|149228834|gb|EDM34233.1| tRNA modification GTPase TrmE [Pedobacter sp. BAL39]
          Length = 456

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/455 (32%), Positives = 234/455 (51%), Gaps = 21/455 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLDGR-ILD 62
            +TI A+ST     AI +IRLSG     +   I   K    +   +L +    DG  ++D
Sbjct: 4   NDTIVALSTPPGAGAIGVIRLSGKDAITITNAIFSGKDLLKQDSHTLHFGLIKDGDTVID 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + ++ +F +P+S+T E+  E   HG   ++  I   L        A PGEF+ RAF NG 
Sbjct: 64  EVVVSLFVAPKSYTKENVVEISCHGSNYIIQQI-ISLLIRKGASAAKPGEFTLRAFLNGS 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLISS+++    ++M  + G  S+      ++L H  S IE +LDFSE E
Sbjct: 123 LDLSQAEAVADLISSDSQAAHNVAMNQLRGGFSNELNVLREQLIHFASMIELELDFSE-E 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV+  +  ++ + I  +   ++  I   +LG +I+ G   VI G  NAGKS+L NAL  +
Sbjct: 182 DVEFANRDQLQDLINKITVVLNKLIRSFELGNVIKEGINTVIAGRPNAGKSTLLNALLNE 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIV+DI GTTRD +   L++ G   ++ DTAGIRE  D +E  G+++T  ++  + ++
Sbjct: 242 DRAIVSDIAGTTRDTIEELLNINGINFRLIDTAGIREATDTIEAIGVEKTMQKINQSAVL 301

Query: 303 LLLKEI------NSKKEISFPKNIDFIF--IGTKSDLYSTY--------TEEYDHLISSF 346
           + L ++        K +I+        F  +  K DL S          ++ +   IS+ 
Sbjct: 302 VYLFDVVNLTIDQIKDDIASLHKPGLTFIAVANKIDLSSEEVLKSLDLPSDVHFIAISAK 361

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405
             E +EEL   +             ++ ++ RH+  L +T   L   S   E     D +
Sbjct: 362 ENEKVEELKQLVYDAAVGDQLSANHTMVTNIRHVEALQRTQDALRSVSNGLENPVTSDFL 421

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A +++ A   LG+ITG V  + LL+ IFSKFCIGK
Sbjct: 422 AMDIKQALHYLGEITGQVTTDDLLENIFSKFCIGK 456


>gi|194770800|ref|XP_001967476.1| GF20720 [Drosophila ananassae]
 gi|190618486|gb|EDV34010.1| GF20720 [Drosophila ananassae]
          Length = 493

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 256/473 (54%), Gaps = 42/473 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLR-YFFGLDGRILDK 63
           TI+++S+G +   +S+IR+SGP   +    I   K+  P  R+A L+ +F      ++D+
Sbjct: 24  TIYSLSSGNVKCGVSVIRVSGPQTKKALRAIVGNKEYEPKARQAYLKSFFHPASKEMIDR 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGEDS EF VHG +AV+  +L+ L K+  LR A PGEF++RAF  GK+
Sbjct: 84  GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L  LY  W  +L    + +EA +DF+EEE 
Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALGRLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  +K +I  H+S  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 204 IEGGVILQLTKELNSVKREIKEHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           VAIVTD  GTTRD++    +  GY V  SDTAG+R+ T D +E+EG++R    +  +D+I
Sbjct: 264 VAIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRKNTTDSIEQEGMQRAKDCLAQSDMI 323

Query: 303 LLLKEINSKKEI---------------------SFPKNIDFIFIGTKSD-LYSTYTEEYD 340
           LL+ +  + +EI                               +  K+D L  T  ++ +
Sbjct: 324 LLMADAKTIREIDHEDSVSQFVDSYLQELDIPVDLCNGKRLQLVANKTDTLSPTEIQQLE 383

Query: 341 ----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                     H     +G  L  L   ++ +      + P    ++ R+   L + + ++
Sbjct: 384 KLSNVLAISCHQPDKISGF-LGHLEKHLQELCGEPRAESPR--ITNTRYRQQLERCIGHI 440

Query: 391 EMASLN---EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++   +   ++   + I A  LR +   + +ITG V  E +LD++F  FCIGK
Sbjct: 441 DVFLRDYRPDRYPDMAIAAAKLRNSVRCIERITGHVSCEDILDVVFKDFCIGK 493


>gi|288573317|ref|ZP_06391674.1| tRNA modification GTPase TrmE [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569058|gb|EFC90615.1| tRNA modification GTPase TrmE [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 456

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 148/457 (32%), Positives = 237/457 (51%), Gaps = 26/457 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-----GLDGRI 60
           +TI A+ST    + ISIIR+SGP  F   + + +   P P K   R  +        G  
Sbjct: 4   DTIAAISTAWGDAGISIIRMSGPDAFDFAKSLVRTFTP-PEKMKYRIMYNGSLLDESGGP 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL++F +P+S+TGED AE H HGG  V    LE   +    R A+PGEF+RRA+EN
Sbjct: 63  IDQVLLVLFQAPKSYTGEDLAEIHCHGGSLVAQRCLERCLQ-KGCRHADPGEFTRRAYEN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++  +I + +    R +   + GELS    +  D+L  + + +E  +DF E
Sbjct: 122 GRLDLSQAEAVNGIIHARSNEALRAANRTLQGELSRFVREIYDELLGLSAELEVGIDFPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            EDV     ++V + +  L  D+   + +   G ++R G ++ ++G  N GKSSL NAL 
Sbjct: 182 -EDVPYIEDQDVSDRMETLIQDLGDLLDRCTTGYLLREGIRVALVGRPNVGKSSLLNALL 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENA 299
           ++  AIVT IPGTTRDV+      +G  +++ DTAG+RET  D VE  GI+RT   ++ +
Sbjct: 241 RESRAIVTSIPGTTRDVIEEVFTHKGIPLRLMDTAGLRETPSDEVEAMGIERTAKAIDES 300

Query: 300 DLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYSTY---------TEEYDHLIS 344
           D++L + + +   EI              I    KSDL   +          E +   IS
Sbjct: 301 DVVLWILDGSEPLEIPDRPLTEKLSGKPHIVALNKSDLPKAFDETDIAKLLPESWVIRIS 360

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLD 403
           +    GL+EL   I  ++ +    L   + +  R +  + + +  L       +      
Sbjct: 361 AQEKRGLDELKEAIVDLV-SGTGTLDAGLNATARQVEEIREAIESLTDGKGALDSYSDQT 419

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + A ++R A  +L ++ G  D E LLD++FS+FC+GK
Sbjct: 420 LAASSIREARSALERLLGLQDDEALLDLVFSRFCVGK 456


>gi|92115738|ref|YP_575467.1| tRNA modification GTPase TrmE [Nitrobacter hamburgensis X14]
 gi|123265484|sp|Q1QRZ0|MNME_NITHX RecName: Full=tRNA modification GTPase mnmE
 gi|91798632|gb|ABE61007.1| tRNA modification GTPase trmE [Nitrobacter hamburgensis X14]
          Length = 457

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 162/459 (35%), Positives = 251/459 (54%), Gaps = 21/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  ++TIFA+S+G  PSAI+++R+SG       + I     P  R A       L G  
Sbjct: 1   MHPREQTIFALSSGRPPSAIAVVRVSGAEAGTALQEIAG-AIPVVRTAKRVLLRDLLGEA 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ F  P S TGED AEFHVHG  AV+N +   L+ + ++R A PGEF+RRAFEN
Sbjct: 60  IDDAIVLWFAGPASATGEDVAEFHVHGSRAVLNALFAALSSIDHVRPAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL EAE L DLI ++T+ QRR ++  + G L     +W  +L    + IEA +DF++
Sbjct: 120 GKIDLTEAEGLDDLIHADTDRQRRQALRQLQGLLGDRAREWRRELIEASALIEAGIDFAD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV +   K  +  I  L+ +I   ++     E +R+G  + I G  NAGKS+L N LA
Sbjct: 180 EGDVPDDLLKPAMEKIARLRREIEETLAASAQSERLRDGMTVAIAGPPNAGKSTLLNRLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIV+   GTTRDV+ + LDL+GY V + DTAGIRETDD VE+EG++R      +AD
Sbjct: 240 RREAAIVSPYAGTTRDVIEVHLDLDGYPVTLIDTAGIRETDDPVEQEGVRRARDRAASAD 299

Query: 301 LILLLKEINS---KKEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------H 341
           L+L L + ++     +      +    +  K D+    ++  +                 
Sbjct: 300 LVLWLADDDNGVGPSQTIGEGGVPLWLVRNKIDVSGAESDGANPRQLEAKPGQGILPRHF 359

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            IS+  G+G++EL+  + +     F     ++ +  RH   L Q        +      G
Sbjct: 360 WISASRGDGVDELVAALTAFSDGWFGSGETAVITRLRHRNIL-QDAAASLAKAEALIGQG 418

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE +R+A   +G++ G VD++ +LD +F  FCIGK
Sbjct: 419 DELVAEEIRIAVRLIGRLLGRVDIDDILDSLFHDFCIGK 457


>gi|163737994|ref|ZP_02145410.1| tRNA modification GTPase TrmE [Phaeobacter gallaeciensis BS107]
 gi|161388610|gb|EDQ12963.1| tRNA modification GTPase TrmE [Phaeobacter gallaeciensis BS107]
          Length = 430

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 171/437 (39%), Positives = 248/437 (56%), Gaps = 10/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    + +S+IRLSGP        I     P P +  LR      G  +D+ L
Sbjct: 2   DTIFALASAQGKAGVSVIRLSGPKAISTASVISGGDLPRPGRV-LRVLSDCSGARIDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+ F  P SFTGED+ EF VHG  +VV+ +L+ L +  ++RL++PGEF+RRA ENGK+DL
Sbjct: 61  LLTFTGPNSFTGEDTVEFQVHGSTSVVSAMLDLLGQFEDVRLSDPGEFTRRALENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E+LADLI +ETE QR  +   ++G L+ L  +W   L    S IE  +DF++ EDV 
Sbjct: 121 SQVEALADLIDAETEAQRVQAQAVLAGGLADLAERWRKDLIRAASLIEVTIDFAD-EDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              +KEV   +  +  D+   I+  K+ E IR+G+++ I+G  N GKS+L NALA ++ A
Sbjct: 180 VDVTKEVKELLAGVTADLEPQIAGVKMAERIRSGFEVAIIGAPNVGKSTLLNALAGREAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRDV+ + +DL G  V + DTAG+RETDD VE  GIK      E ADL + L
Sbjct: 240 ITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETDDHVEGIGIKMAKERAEKADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E   +  I    + D I +  K+DL      +    +S  TG+G++ LI  I  +L N+
Sbjct: 300 TE--DRTAIDIDISEDDIVVAPKADLVGDGVPQ--KAVSGKTGQGIDMLIADITKVLRNR 355

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCV 423
             K+   I +  RH   +      L+ A    +      D+ AE++R A  SL  + G V
Sbjct: 356 AGKV--GIATRARHRETMKTAYDRLQSAQDVLRYGPEFYDVAAEDMRSAIRSLEMLVGRV 413

Query: 424 DVEQLLDIIFSKFCIGK 440
            VE LLD IFS FC+GK
Sbjct: 414 GVENLLDEIFSSFCLGK 430


>gi|33414589|ref|NP_115933.2| tRNA modification GTPase GTPBP3, mitochondrial precursor [Mus
           musculus]
 gi|81867616|sp|Q923K4|GTPB3_MOUSE RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial;
           AltName: Full=GTP-binding protein 3; Flags: Precursor
 gi|60729690|pir||JC8039 mitochondrial GTP-binding protein GTPBP3 - mouse
 gi|14388168|gb|AAK60410.1| GTP binding protein 3 [Mus musculus]
 gi|33303614|gb|AAK35216.2| mitochondrial GTP-binding protein 1 [Mus musculus]
 gi|148668861|gb|EDL01029.1| GTP binding protein 3, isoform CRA_a [Mus musculus]
 gi|187951095|gb|AAI38561.1| GTP binding protein 3 [Mus musculus]
          Length = 492

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 169/461 (36%), Positives = 250/461 (54%), Gaps = 30/461 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64
           TIFA+S+G    AI++IR SGP+       +   ++P P R+A LR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALQEPPPARRACLRLLRHPCSGEPLDRS 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GELS L   W   LT   +++EA +DF E++++
Sbjct: 155 LTEVEGLADLIRAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAYVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + SH+   + G+ + +G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQADREVRALEVALGSHLRDARRGQRLLSGANVVVTGPPNAGKSSLVNLLSQKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL- 303
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R    +E AD+IL 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGAVEQEGVRRARHRLEQADIILG 334

Query: 304 ----------------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
                                 LL +            ++   + + +            
Sbjct: 335 VLDASDLASSSSCSFLDTVVTPLLAQSQDSGGQRLLLLLNKSDLLSANAPACDIALPPHL 394

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKD 399
           L+S  TG G++ L+  +K+ L+           + +  RH YHL   +  L    L    
Sbjct: 395 LLSCHTGAGMDSLLQALKTELAAVCGDPSTGPPLLTRVRHQYHLQGCLDALGHYQLA--- 451

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + AE LR A   L  +TG    E++LD+IF  FC+GK
Sbjct: 452 TDLALAAEALRQARRQLNHLTGGGGTEEILDLIFQDFCVGK 492


>gi|171061051|ref|YP_001793400.1| tRNA modification GTPase TrmE [Leptothrix cholodnii SP-6]
 gi|205415776|sp|B1Y0F6|MNME_LEPCP RecName: Full=tRNA modification GTPase mnmE
 gi|170778496|gb|ACB36635.1| tRNA modification GTPase TrmE [Leptothrix cholodnii SP-6]
          Length = 479

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 151/481 (31%), Positives = 236/481 (49%), Gaps = 44/481 (9%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    E I A++T     A+ I+R+SG     +   +  +    PR AS   F    G  
Sbjct: 2   LPRHHEPIAAIATAPGRGAVGIVRVSGRGLTALATALVGRPL-RPRVASYGPFLDRQGGA 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA------------KMPNLRLA 108
           +D+GL + FP+P S+TGED  E   HGG  V+  +L                ++P LRLA
Sbjct: 61  IDRGLALHFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAGEIGTDGRPRLPGLRLA 120

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
            PGEF+ RA+ N K+DL +AE++ADLI + TE   R +   +SG+ S       D L  +
Sbjct: 121 QPGEFTERAYLNDKLDLAQAEAVADLIDASTEAAARSAARSLSGDFSRQITHLRDGLIEL 180

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           R+ +EA LDF E E++      +    +  L   ++  +   + G ++R G ++VI G  
Sbjct: 181 RALVEATLDFPE-EEIDFLQRADAHGRLARLAERLAGLLDTARQGALLREGLRVVIAGQP 239

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVE 285
           NAGKSSL NALA  ++AIVT IPGTTRD ++  + +EG  V + DTAG+R  +   D VE
Sbjct: 240 NAGKSSLLNALAGAELAIVTPIPGTTRDKISETIQIEGVPVHVIDTAGLRSDEQAGDEVE 299

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST 334
           + GI R++  +  AD +LLL ++  + E +            P ++  I +  K+D    
Sbjct: 300 RIGISRSWQAIAEADAVLLLHDLTREHEPAYSAADTAIAQRLPADVGLIHVHNKADAAPE 359

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                          +    ++S+ T +G++ L        +           + +RH+ 
Sbjct: 360 QAARVAARLAARQAGDAAGVVLSARTHDGIDALRAA-LLARAGWHAAPEGVFIARERHVR 418

Query: 382 HLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439
            L     ++  A     + D  LD++AE LR A  +L +ITG    + LL  IF +FCIG
Sbjct: 419 ALRAAATHVTAAQGWAEQSDSALDLLAEELRSAHDALAEITGSYSSDDLLGDIFGRFCIG 478

Query: 440 K 440
           K
Sbjct: 479 K 479


>gi|294627441|ref|ZP_06706025.1| tRNA modification GTPase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598262|gb|EFF42415.1| tRNA modification GTPase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 446

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 148/449 (32%), Positives = 237/449 (52%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++      + I+RLSGP   Q+   +    +  PR A    F    G +
Sbjct: 1   MSSSTSTIVAIASATGIGGVGIVRLSGPQSVQIAAHL-GIARMRPRHAHYARFRDGQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++     +   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIAL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       + LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSQRVDALAETLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E +     K+V + +   +N ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 -EPLDTLGGKQVRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R  +E+E AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARVELERAD 297

Query: 301 LILLLKEINSKKEISFPKNIDFI------FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +                 +I  K DL       +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDPQAARDAIGDAIDAVPRQLWIHNKCDLLGNAASLDANAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++++ L +    +     +  RH+  L +  ++ + A L      L++ AE LRL
Sbjct: 358 QLHIRLRALALGDGVDSVDGEFSARTRHVEALRRAEQHADAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446


>gi|255535209|ref|YP_003095580.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341405|gb|ACU07518.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Flavobacteriaceae
           bacterium 3519-10]
          Length = 462

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 145/466 (31%), Positives = 240/466 (51%), Gaps = 30/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLDG- 58
           MN   +TI A++T     AI IIR+SG    ++   I   K        ++ Y F  DG 
Sbjct: 1   MN--NDTICALATANGIGAIGIIRVSGSDSIRIVNLIFEGKDLEKANSHTVHYGFIKDGD 58

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ ++ VF +P++FT EDS E   HG   +   ILE L K    R+A  GEF+ RAF
Sbjct: 59  ETVDEVMVTVFMAPKTFTTEDSVEISFHGSPFIGKKILEVLIK-NGARMARAGEFTMRAF 117

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AES+ADLI+SE E  R++++  + G +++        L +  S IE +LDF
Sbjct: 118 MNGRIDLSQAESIADLIASENEASRKVALNQLKGGITNEISILRTDLLNFVSLIELELDF 177

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E EDV+      ++  +  ++  + S I   + G  I+NG  + I+G  NAGKS+L NA
Sbjct: 178 AE-EDVEFADRDALVQLLRKIEEKLISLIDSFEYGNAIKNGVGVAIIGKPNAGKSTLLNA 236

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L K++ AIV+DI GTTRD +   L ++G   ++ DTAG+RET D +EK G+ +   +V  
Sbjct: 237 LLKEERAIVSDIAGTTRDTIEEMLHIKGNAFRLIDTAGLRETSDEIEKIGVAKAREKVAT 296

Query: 299 ADLILLLKEI---NSKKEISFPKNIDFI-----FIGTKSDLYSTYTEEYDHLI------- 343
           A++++ L +    +  +++   +++         + TK+DL  +  +  +          
Sbjct: 297 AEILVYLIDSTETDISEDVELIRDLARYDLSLIVLLTKTDLPKSALQSEEIRNSLPVLDF 356

Query: 344 --------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-S 394
                   S+     L+EL       + +        + +++RH   L  +++ +     
Sbjct: 357 KDFHLIPVSAKQNSNLDELKEAFTGYVDDLNSGENNVVITNQRHFEALQHSLQAVHAVHE 416

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                   +++A  LR A   LG+I+G    +++L  IFSKFCIGK
Sbjct: 417 AVSSRITTELLAYELRNALEYLGEISGEFTNDEVLGNIFSKFCIGK 462


>gi|281423258|ref|ZP_06254171.1| tRNA modification GTPase TrmE [Prevotella oris F0302]
 gi|281402594|gb|EFB33425.1| tRNA modification GTPase TrmE [Prevotella oris F0302]
          Length = 454

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 138/458 (30%), Positives = 231/458 (50%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRY--FF 54
           MN    TI A++T A   AI I+R+SG    ++ + +     K+     +  ++ Y    
Sbjct: 1   MNSN--TICALATSAG-GAIGIVRVSGDKATEITDRVFSGIGKRSLLEAKGNTVHYGEIH 57

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
              G I+D+ L+ VF +P S+TGED  E   HG   V++ +++ L      R A PGEF+
Sbjct: 58  DQQGNIIDEVLVSVFRAPHSYTGEDCTEISCHGSTYVLSQVVKVLI-DAGCRQAAPGEFT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RA+ NGK+DL +AE++ADLI+S  +   +L++  + G  SS   +  ++L  I S +E 
Sbjct: 117 KRAYLNGKMDLSQAEAVADLIASTNKASHKLALSQLKGHFSSELSRLREQLLKITSLLEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ E+++     E+      +   I++ I   + G  ++ G  + I+G +N GKS+
Sbjct: 177 ELDFSDHEELEFADRSELKTLAEKIHERIATLIHSFETGNALKKGIPVAIIGKTNVGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV++I GTTRDV+    +++G   +  DTAGIRET D+VE+ GI+R + 
Sbjct: 237 LLNCLLHEDKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTAGIRETKDVVEQLGIERAYK 296

Query: 295 EVENADLILLLKEINSKKEI-----SFPKNIDFIFIGTKSDLYS-----TYTEEYDHLIS 344
           ++  A ++L + +     E              + +  K D          ++ +   IS
Sbjct: 297 KISEATIVLWVADEQPTTEEYTEIHQLTAEKKLLLVFNKMDRKDFKPITINSKFHVIYIS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLD 403
           +   + + EL   I  +           I ++ RH   L       L +    +     D
Sbjct: 357 AKHKQNMAELETAIYEVADIPEITENSIIVTNARHYEALVHANDSILRVIEAMDTGLSGD 416

Query: 404 IIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           +I+E+LRL    L +IT G +   ++L  IF  FCIGK
Sbjct: 417 LISEDLRLCLEQLAEITGGQITTNEVLGNIFKHFCIGK 454


>gi|224541282|ref|ZP_03681821.1| hypothetical protein CATMIT_00442 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525786|gb|EEF94891.1| hypothetical protein CATMIT_00442 [Catenibacterium mitsuokai DSM
           15897]
          Length = 445

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 141/449 (31%), Positives = 244/449 (54%), Gaps = 13/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59
           M    + I A++T  L +AISIIR+SG  C    +           + ++ Y + +DG  
Sbjct: 1   MTMNDDIICAIATSRLEAAISIIRISGKGCIDFVQSFFTGNLNKKSQ-TISYGYIVDGEE 59

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ L+ ++    +FTGE+  E + HGG+ + N +L    K    R+A  GEFS+RAF 
Sbjct: 60  KVDEVLISIYRGQHTFTGEEMVEINCHGGVFITNKVLSLCLK-KGARMAEHGEFSKRAFL 118

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE+++DLI++  +   +L+++G+ G +++      + L  I + IE ++D+ 
Sbjct: 119 NGRIDLSQAEAISDLITANNDQAAKLALKGIQGNITNFIKDLKEDLIKIITQIEVNIDYP 178

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED++  +++++L   + L+  +   + + K   +I++G   VI+G  N GKSSL NAL
Sbjct: 179 EYEDIEELTAEKLLPGSVSLRKKMDDILDRSKNMHLIKDGISTVIVGKPNVGKSSLLNAL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++D AIVTDI GTTRDV+   + L   ++ + DTAGIRET+D +E  G+K++   ++ A
Sbjct: 239 LEEDKAIVTDIAGTTRDVVEGSIRLNDIVLNMIDTAGIRETEDKIEHMGVKKSLSLIDQA 298

Query: 300 DLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           DL+L++ +         K+ +   + ++ I +  KSD       E  H   S     ++E
Sbjct: 299 DLVLVVLDGSRPIEAEDKELLERTEGLNRIVLINKSDKGCVIDTEGIH--ISAKENHIDE 356

Query: 354 LINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRL 411
           LI  IK     +        + +++R +  L +  + L +A    E     D+I  +L  
Sbjct: 357 LIQHIKDEFDFSAITNSQAQVLANQRQVQLLEKASQSLNVAIQAMEDGIPTDLIVTDLYD 416

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +L +I G    E LLD +F +FCIGK
Sbjct: 417 SWENLKEILGEQAKEDLLDELFKRFCIGK 445


>gi|212550616|ref|YP_002308933.1| tRNA modification GTPase TrmE [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548854|dbj|BAG83522.1| tRNA modification GTPase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 464

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 143/462 (30%), Positives = 230/462 (49%), Gaps = 31/462 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP----FPRKASLRYFFGL---DGR 59
           TI A++T      ++IIR+SG     +   I   K         +A+    FG+   +  
Sbjct: 6   TICAIATPPGQGGVAIIRISGKEALAIASRIYTPKAKNITTIEDQAAYTSSFGIIHKENE 65

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ILDK ++ VF SP SFTGED+ E   HG I +   I++ L       LA PGEF+++AF 
Sbjct: 66  ILDKVVVFVFRSPHSFTGEDTVEITCHGSIYIQQEIIK-LLLDNGCHLARPGEFTQKAFL 124

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AES+ DLISS +    RL+   M G           +L    S IE +LDF 
Sbjct: 125 NGKMDLSQAESVIDLISSSSAAAHRLAFNQMRGGFGKKLKNLRFQLLRFVSLIELELDFE 184

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  DV+     ++L+ +L +K+ +S  I    LG  I+NG  +VI+G +N GKS+L N L
Sbjct: 185 E--DVEFVDRVKLLDSVLSIKDTLSHLIQSFSLGNAIKNGIPVVIIGETNVGKSTLLNHL 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV++I GTTRD++   +++ G   +  DTAGIR T + +E  GI+RT+ +++ A
Sbjct: 243 LNEEKAIVSEIHGTTRDIIEDVINISGIAFRFIDTAGIRNTKNEIELLGIERTYQKIKKA 302

Query: 300 DLILLLKEINS-KKEISFPKNI--------DFIFIGTKSDLYS-----TYTEEYDH---- 341
            +++ + +     KEI    +           I I  K D  +        ++  H    
Sbjct: 303 SIVIWMIDATKFNKEIKHIADRISPLIMDKKLIVIFNKIDKLNHSKQFFLKKKLPHISAE 362

Query: 342 --LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK- 398
              +S+      + L   +              I ++ RH   L   +  L+      K 
Sbjct: 363 YICLSAKYKRNTDILEKTLLEAAKLSSLNYNDIIVTNMRHYEALRSALGALQRIEEGLKT 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   ++I++++R  +  LG+ITG +  +++L+ IF  FCIGK
Sbjct: 423 NVSYELISQDIRECTHYLGEITGEISTDEILENIFKNFCIGK 464


>gi|119503567|ref|ZP_01625650.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2080]
 gi|119460629|gb|EAW41721.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2080]
          Length = 437

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 160/440 (36%), Positives = 237/440 (53%), Gaps = 9/440 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI AV+T      I I+RLSG    ++   I ++     R A    F     R++D GL
Sbjct: 2   ETIAAVATAPGRGGIGIVRLSGAKALEIALLITQRDSVDNRFAHYAKFTDRHDRVIDDGL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F  P+SFTGED  E   HGG  V+  +L+   ++   R ANPGEFS RAF NG+IDL
Sbjct: 62  VIGFTGPQSFTGEDCVELQGHGGPVVIGLLLQRCLEL-GARHANPGEFSERAFLNGRIDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ADLI++++    R +   +SG  S+   Q +  +T +R F+EA LDF E E++ 
Sbjct: 121 IQAEAIADLIAADSTTAARQAQASISGVFSTSINQIMRDITGLRVFVEAALDFPE-EEID 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S   V   +  +   ++  I Q K G I++ G  +V+ G  N GKSSL NAL+ +D+A
Sbjct: 180 FISEGNVDQQVDLILEHLARLIRQAKEGAILQGGATLVLAGKPNVGKSSLLNALSGEDIA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRDVL   + + G   ++ DTAG+R ++D VE EG++R    +  AD++L +
Sbjct: 240 IVTDIAGTTRDVLKQTVVICGVPFELIDTAGLRTSNDPVEIEGVRRAEAAISQADILLEV 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD----HLISSFTGEGLEELINKIKSI 361
            + +S K++S       I +  K DL        D      +S  TGEG++ L   I   
Sbjct: 300 ID-DSSKDVSNSALTSGIKVVNKIDLTDRTPGPIDGGKAVAVSVHTGEGIDALKQLILET 358

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKIT 420
           L    ++      + +RHL  L +    L E           +++AE+L+     LG IT
Sbjct: 359 L-GITEQTENRFSARERHLRALREGHTSLAEAVQRFLATRAGELLAEDLKKTHDILGAIT 417

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G +  + LL  IFS FCIGK
Sbjct: 418 GKLTSDDLLGEIFSSFCIGK 437


>gi|329847386|ref|ZP_08262414.1| tRNA modification GTPase TrmE [Asticcacaulis biprosthecum C19]
 gi|328842449|gb|EGF92018.1| tRNA modification GTPase TrmE [Asticcacaulis biprosthecum C19]
          Length = 443

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/447 (37%), Positives = 253/447 (56%), Gaps = 16/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TIFA+++    + +SI+RLSGP  F   + +  K  P  R+A        DG ++D+ 
Sbjct: 2   NQTIFALASAQGRAGVSILRLSGPDAFSALQRLTDKPVP-ARRAVFTALV-HDGELIDEA 59

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F  P SFTGED  E HVHG  A+++  L  +     LRLA PGEFSRRA ENGK+D
Sbjct: 60  VVLFFQGPNSFTGEDCVELHVHGSRAILDR-LYVILAEMGLRLAQPGEFSRRALENGKLD 118

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADL+ +E+E QRR ++  M G L + Y  W   L  I + IE  +DF + ED+
Sbjct: 119 LTQAEAIADLVDAESEAQRRQALTQMGGGLKTQYEAWHAALVDILARIEVYIDFPD-EDL 177

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                  +L+ +  ++  + + I+  K G  IR G++IVILG  NAGKSSLFNAL K + 
Sbjct: 178 PTELVDSILDRMAAVQASLEAAIADAKRGRQIREGFRIVILGEPNAGKSSLFNALLKAET 237

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT I GTTRDV+  +L +  Y V + DTAG+RET ++VE+EGI+R   + + ADL L 
Sbjct: 238 AIVTPIAGTTRDVIEAELRIGPYSVLLYDTAGLRETAEVVEREGIRRARAKGDEADLRLW 297

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSD-----LYSTYTEE------YDHLISSFTGEGLEE 353
           + + ++            +    K D     LY ++ +           +S  TG+G++E
Sbjct: 298 VIDSSASGLDGVESRAGDLVAFNKIDQGSDNLYESFKDADVSRGTSAFKVSVATGQGIDE 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L+  ++S+++ +     F   +  RH   L   V +L+ A L       ++ AE++R + 
Sbjct: 358 LVRALESVVTKRLSVQTFPAATRARHFERLQDAVDHLDHARLTRMRVP-ELTAEHVRGSI 416

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            S   + G  DVE +LD++FS FCIGK
Sbjct: 417 NSFEALFGRYDVEGILDVVFSTFCIGK 443


>gi|299140501|ref|ZP_07033639.1| tRNA modification GTPase TrmE [Prevotella oris C735]
 gi|298577467|gb|EFI49335.1| tRNA modification GTPase TrmE [Prevotella oris C735]
          Length = 455

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 139/458 (30%), Positives = 232/458 (50%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRY--FF 54
           MN    TI A++T A   AI I+R+SG    ++ + +     KK     +  ++ Y    
Sbjct: 2   MNSN--TICALATSAG-GAIGIVRVSGDKAIEITDRVFSGIGKKSLLEAKGNTVHYGEIH 58

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
              G I+D+ L+ VF +P S+TGED  E   HG   V++ +++ L      R A PGEF+
Sbjct: 59  DQQGNIIDEVLVSVFRAPHSYTGEDCTEISCHGSTYVLSQVVKVLI-DAGCRQAAPGEFT 117

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RA+ NGK+DL +AE++ADLI+S  +   +L++  + G  SS   +  ++L  I S +E 
Sbjct: 118 KRAYLNGKMDLSQAEAVADLIASTNKASHKLALSQLKGHFSSELSRLREQLLKITSLLEL 177

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ E+++     E+      +   I++ I   + G  ++ G  + I+G +N GKS+
Sbjct: 178 ELDFSDHEELEFADRSELKTLAEKIHGRIATLIHSFETGNALKKGIPVAIIGKTNVGKST 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV++I GTTRDV+    +++G   +  DTAGIRET D+VE+ GI+R + 
Sbjct: 238 LLNCLLHEDKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTAGIRETKDVVEQLGIERAYK 297

Query: 295 EVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLIS 344
           ++  A ++L + +     E              + +  K D          ++ +   IS
Sbjct: 298 KIGEATIVLWVVDEQPTTEEYTEIQQLTAEKKLLLVFNKMDRKEFKPITINSKLHVIYIS 357

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLD 403
           +   + + EL   I  +           I ++ RH   L       L +    +     D
Sbjct: 358 AKHKQNMAELETAIYEVADIPEITENSIIVTNARHYEALVHANDSILRVIEAMDTGLSGD 417

Query: 404 IIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           +I+E+LRL    L +IT G +   ++L+ IF  FCIGK
Sbjct: 418 LISEDLRLCLEQLAEITGGQITTNEVLENIFKHFCIGK 455


>gi|296445001|ref|ZP_06886962.1| tRNA modification GTPase TrmE [Methylosinus trichosporium OB3b]
 gi|296257422|gb|EFH04488.1| tRNA modification GTPase TrmE [Methylosinus trichosporium OB3b]
          Length = 435

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 172/439 (39%), Positives = 261/439 (59%), Gaps = 9/439 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDK 63
            +TIFA+++GA  +AI++IRLSGP    + E +     P PR A          G  +D+
Sbjct: 3   SDTIFALASGAGRAAIAVIRLSGPLVSPLVEAVAG-LTPTPRFAHYVRLRDPRSGETIDR 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP   S TGED AE  +HGG AV++G L   ++ P LRLA PGEF+RR+F NG++
Sbjct: 62  GLLLFFPVESSPTGEDYAELQIHGGRAVIDGFLTLFSETPGLRLAEPGEFARRSFANGRM 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL + E LADLI +ET  QRR +++ + G L      W + +    + +EA+LDFS+E D
Sbjct: 122 DLSQVEGLADLIDAETASQRRQALQALGGGLRRRVEGWREAVICGAALVEAELDFSDEGD 181

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V++  ++++   +     D+     Q    E +R+G+ +++LG  N+GKS+L NALA++D
Sbjct: 182 VRD-PAEQLRPLLEPQARDMEEMARQAPAAERLRDGFLVLLLGPPNSGKSTLLNALARRD 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIV+ IPGTTRD++ + LDL G  V + DTAG+RE +D +E+ G+ RT   +  ADL+L
Sbjct: 241 VAIVSAIPGTTRDMIEVHLDLGGLPVTLVDTAGLREAEDEIERLGVARTRARIGEADLLL 300

Query: 304 LLKEINSKK--EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            L E       E       D + + TK+D+ +      D  IS+ TG GLE LI +I+  
Sbjct: 301 WLSEGGETLVGEEIVAGAADSLRLATKTDIRAAGA--CDLAISAQTGLGLEALIAEIRWR 358

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
              +      ++ + +RH   + +    L +    E    L+I+AE+LR A+ +LG+I G
Sbjct: 359 AQRRLGDGSSAVLTRERHRRLVEEAAAALRVCL--EPGKPLEIVAEDLRAANRALGRIVG 416

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            VDVE +LD +F++FCIGK
Sbjct: 417 SVDVEDVLDAVFAQFCIGK 435


>gi|77748780|ref|NP_644664.2| tRNA modification GTPase TrmE [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 446

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 148/449 (32%), Positives = 237/449 (52%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +    +  PR A    F    G +
Sbjct: 1   MSSSTSTIVAIASAAGIGGVGIVRLSGPQSVQIAAHL-GIARMQPRHAHYARFRDGHGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       + LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSQRVDALAETLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E +      +V + +   +N ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 -EPLDTLGGNQVRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297

Query: 301 LILLLKEINSKKEISFPKNIDFI------FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +                 +I  K DL       +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDLQAARDAIGDAIDTVPRQLWIHNKCDLLGNAASLDANAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++++ L +    +     +  RH+  L +  ++ + A L      L++ AE LRL
Sbjct: 358 QLHIRLRALALGDGVDSVDGEFSARTRHVQALRRAEQHADAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446


>gi|126734408|ref|ZP_01750155.1| tRNA modification GTPase [Roseobacter sp. CCS2]
 gi|126717274|gb|EBA14138.1| tRNA modification GTPase [Roseobacter sp. CCS2]
          Length = 426

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 167/437 (38%), Positives = 254/437 (58%), Gaps = 14/437 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T    S ++I+R+SGP   Q    +       P    +R      G +LD+ L
Sbjct: 2   DTIFALATAQGRSGVAIVRISGPFAVQATSRLAGS---VPDARGVRQLRDARGELLDQAL 58

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP+ +SFTGE   E H+HG  AVV+ +L  L  MP LR A  GEF+RRA ENG+++L
Sbjct: 59  ILRFPNGQSFTGEVVVELHLHGSPAVVHAVLRCLGDMPELRQAEAGEFTRRALENGRLNL 118

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E LADLI +ETE QR+ ++   SG L  L   W  +L    + +EA +DF++ E+V 
Sbjct: 119 AEVEGLADLIDAETESQRKQAVRVFSGALGELADSWRVRLIRAAALLEATIDFAD-EEVP 177

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV + +  ++ ++       ++ E +R+G+++ I+G  N GKS+L N LA +DVA
Sbjct: 178 VDVSPEVNDLLAHVRQEMVREADGVRVAERVRDGFEVAIIGAPNVGKSTLLNRLAGRDVA 237

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +++ GTTRDV+ + +DL+G  V + DTAG+RETDD+VE  G+ R     E AD  + L
Sbjct: 238 ITSEVAGTTRDVIEVQMDLDGLPVTLLDTAGVRETDDVVEGLGVARALERAERADFRIHL 297

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
             + +  + S P   D + +  KSDL+    +     +S  TG+G++++I ++   L  K
Sbjct: 298 --LMAPNDTSAPSGPDDLIVQAKSDLH----DGDGMAVSGKTGDGIDQMIARVSGRLQEK 351

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
             ++   I   +RH   L   V YL+   A+L + D   D+IAE+LR A  ++  I G V
Sbjct: 352 VGQI--GIAMRERHRVALVGAVGYLDDATAALGQSDMMTDLIAEDLRSAIRAVDSIVGRV 409

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE +LD IFS FCIGK
Sbjct: 410 DVEHVLDEIFSSFCIGK 426


>gi|269122893|ref|YP_003305470.1| tRNA modification GTPase TrmE [Streptobacillus moniliformis DSM
           12112]
 gi|268314219|gb|ACZ00593.1| tRNA modification GTPase TrmE [Streptobacillus moniliformis DSM
           12112]
          Length = 455

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 146/456 (32%), Positives = 239/456 (52%), Gaps = 23/456 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDGRI 60
            +TI A+ST    S I I+R+SG   F +   I     K K     K +  Y +  +G+ 
Sbjct: 3   FDTIAAISTARGESGIGIVRISGDRAFDILNEIFIPYTKNKDLGNYKLNYGYIYD-EGKA 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+     P S+T ED  E + HGG      ILE + K    R+A  GEF++RAF N
Sbjct: 62  VDEVLVSRMKGPRSYTTEDIVEINCHGGYYTTKKILEVVLK-KGARMAEIGEFTKRAFMN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I  +TE    LS++ + G L     ++ +    I + +   +D+ E
Sbjct: 121 GRIDLSQAEAVIDIIHGKTEKSVSLSLDQLKGSLRDQIKEFKEAFLDITAHVNVVMDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E + +    E+   +  +     + IS    G+ I+ G K VI+G  N GKS+L N L 
Sbjct: 181 -EGIDDPLPLELRKKLEEVYKKADTLISSYDKGKKIKEGIKTVIVGKPNVGKSTLLNTLL 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +++ AIVT +PGTTRDV+   ++++G  + + DTAGIRETDDIVE  G+K++   +E AD
Sbjct: 240 QEERAIVTSVPGTTRDVIEEIINIKGIPLVLVDTAGIRETDDIVENIGVKKSLEFIEMAD 299

Query: 301 LILLLKEIN---SKKEISFPKNI-----DFIFIGTKSDL-----YSTYTEEYDHLISSFT 347
           L+LL+ + +    +++I   + I      +I +  K DL      S Y       IS+  
Sbjct: 300 LVLLVLDSSKEIEEEDIRVIEKILELEKQYIVLLNKIDLERKLDISKYNLNNIVEISAQN 359

Query: 348 GEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404
              ++++ N+I   +++          I ++ RH   L +T   +  +    +    LD+
Sbjct: 360 NINMDKMENEIYEFITDNEIDDSSERLILTNIRHKTALEKTKESIKNIFDTIDMGMPLDL 419

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+ +L+    SL +ITG +  E +LD IF+KFC+GK
Sbjct: 420 ISVDLKEGLDSLSEITGEITSEDVLDHIFAKFCVGK 455


>gi|289524240|ref|ZP_06441094.1| tRNA modification GTPase TrmE [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502896|gb|EFD24060.1| tRNA modification GTPase TrmE [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 462

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 236/458 (51%), Gaps = 23/458 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDG 58
           +  +TI ++ST    + I+I+RLSGP    + E   +  KP     PR     +     G
Sbjct: 8   NLDDTIASISTAWGEAGIAIVRLSGPQALDIAEKAFRGIKPLKDTPPRYMRNGFLLDERG 67

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L + F +P+S+TGED  E H HGG+ V +  LE L      RLA PGEF++RAF
Sbjct: 68  APIDEVLGVWFRAPKSYTGEDVVEIHCHGGLLVASKCLE-LLTAQGARLAEPGEFTQRAF 126

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++  +I ++++     +   + GELS+      D L +I + +EA+LDF
Sbjct: 127 LNGRIDLTQAEAVLGVIRAKSDEALLSAARTLRGELSARVNGIYDSLLNISATLEANLDF 186

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E ED+   S  ++   +  +  ++   I + K+G+ +R+G K+ I+G  N GKSS+FNA
Sbjct: 187 PE-EDIPYLSQDDLFQSLKAIALNLQDVIYRCKVGKALRDGIKVAIVGRPNVGKSSIFNA 245

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVT IPGTTRD++   +   G  +   DTAG+R TDD+VE  G+      +  
Sbjct: 246 LLEETRAIVTPIPGTTRDIIEGSIVHRGIPIIFMDTAGLRATDDLVETIGVSMAQKALRE 305

Query: 299 ADLILLLKEIN---SKKEISFP---KNIDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           ADL L + + +   +K+EI      KN   I    K+D+    + E    +         
Sbjct: 306 ADLRLWIIDGSEQLTKEEIDMAMELKNHSHIVAINKADIPQVISLEDVKQMLPESEIMVL 365

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
           SS+  E + EL  +I   L      +     +  R +  L   +  +E + S        
Sbjct: 366 SSYDKEAIGELKERIVKKLFKD-SAINEGFNATARQIETLKSVLSCVENSISSLASGEPQ 424

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++A NL  A   + ++ G    E L+ +IFS+FC+GK
Sbjct: 425 DLVASNLLEARYYIDRLLGRNFDEDLIHLIFSQFCVGK 462


>gi|90194112|gb|ABD92617.1| ThdF [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 434

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 145/437 (33%), Positives = 237/437 (54%), Gaps = 21/437 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRISGPLAQEVAKEVLGKEL-KPRLANYLPFKDQDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   ++    + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 EGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL+ +   + 
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQT 298

Query: 313 EISF-----------PKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFTGEGLEELI 355
             +F           P+NI    I  K DL   +   +E D      +S+ T  G++ L 
Sbjct: 299 AEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDVEQLLDI 431
           +L +ITG    + LL  
Sbjct: 418 ALSEITGQFTSDDLLGN 434


>gi|319788687|ref|YP_004148162.1| tRNA modification GTPase TrmE [Pseudoxanthomonas suwonensis 11-1]
 gi|317467199|gb|ADV28931.1| tRNA modification GTPase TrmE [Pseudoxanthomonas suwonensis 11-1]
          Length = 445

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 153/444 (34%), Positives = 245/444 (55%), Gaps = 12/444 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A++T      + I+RLSGP    +   +C ++   PR+A   +F   DG ++D G+
Sbjct: 5   DTIAAIATAPGAGGVGIVRLSGPEALAIAAALCGRE-AAPRRALRAFFREADGAVIDDGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P SFTGED AE   HG   V+  ++E   +    R A PGEFS RAF NGK+DL
Sbjct: 64  VLAFPGPHSFTGEDVAELQAHGSPVVLQRLVERC-RELGARQARPGEFSERAFLNGKLDL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ADLI++      R +   + G  S       D L  +R  +EA +DF + E ++
Sbjct: 123 VQAEAIADLIAASDLRAARAARRSLEGVFSRQVEDASDALLRLRIHVEAAIDFVD-EPIE 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                +V   +  L++++   +++ + G  +R+G   V+LG  NAGKSSL NALA    A
Sbjct: 182 TLGLPQVATALARLQDELGELLARAERGRRLRDGLHAVLLGPPNAGKSSLLNALAGDARA 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV D+ GTTRDVL   + ++G  + ++DTAG+RE  D +E+EG++R   EVE ADL LL+
Sbjct: 242 IVADVAGTTRDVLREVVRIDGLELVLADTAGLREGGDAIEREGMRRARAEVERADLALLV 301

Query: 306 KEINSKKE-----ISFPKNIDFI-FIGTKSDLYSTYT--EEYDHLISSFTGEGLEELINK 357
            +  + +          +++    +I  K+DL        E    +S+ TG+GL+ L   
Sbjct: 302 LDARAPQADRAALEEAARDVPLKLWIHNKADLLPRLPADGEDAIHVSALTGQGLDRLHAA 361

Query: 358 IKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           ++ +  S   +       +  RHL  L + +  + +A+   +   L++ AE LR+A  ++
Sbjct: 362 LRRLAASGAPEAAEGEFSARARHLEALREALDAIAVAAAELEAGQLELAAEQLRMAHDAM 421

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G +TG +  +QLL  IFS FCIGK
Sbjct: 422 GTLTGRLTADQLLGHIFSSFCIGK 445


>gi|149912889|ref|ZP_01901423.1| tRNA modification GTPase TrmE, putative [Roseobacter sp. AzwK-3b]
 gi|149813295|gb|EDM73121.1| tRNA modification GTPase TrmE, putative [Roseobacter sp. AzwK-3b]
          Length = 428

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 171/435 (39%), Positives = 246/435 (56%), Gaps = 8/435 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+ST    + ++IIR+SGP  F   + +     P PR+ASLR     DG  LD+ L
Sbjct: 2   DTIYALSTAQGKAGVAIIRVSGPLAFGAAQALAG-AVPSPREASLRILRAPDGMRLDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F    SFTGED  EFHVHG  AVV  +L+ L+ + +LR A PGEF+RRA ENG +DL
Sbjct: 61  VLTFAQGHSFTGEDIVEFHVHGSTAVVAAVLDALSTLDDLRPAEPGEFTRRALENGCLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QRR ++  +SG+L      W   L    + +EA +DF++ EDV 
Sbjct: 121 AQVEGLADLIDAETESQRRQALRVLSGDLGKRAETWRTSLIRAAALLEATIDFAD-EDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV   +  + ND+   I+     E IR+G+++ I+G  N GKS+L NALA +D A
Sbjct: 180 VDVSPEVTELVTSVTNDLEREITGVTTAERIRSGFEVAIVGAPNVGKSTLLNALAGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +++ GTTRDV+ + +DL G  V + DTAGIRETDDIVE  G++R     + ADL + L
Sbjct: 240 ITSEVAGTTRDVIEVRMDLGGLPVTLLDTAGIRETDDIVESIGVERALARAQAADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                  +++     D I +  K+DL            S  TG G+ +LI +I +ILS +
Sbjct: 300 VTGGDTPDLN--PEPDDIVLNAKADLSDNPANGI----SGKTGLGVSDLIARITAILSKR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425
                 +     +      +      +A L E +   DI AE +R A  +L  + G VD+
Sbjct: 354 ASGAGLATRLRHKQAMERGRAALQSALALLPEGEDTADITAEEIRTAIRALDSLVGRVDI 413

Query: 426 EQLLDIIFSKFCIGK 440
           E +LD IF+ FC+GK
Sbjct: 414 ENILDEIFASFCLGK 428


>gi|67459606|ref|YP_247230.1| tRNA modification GTPase TrmE [Rickettsia felis URRWXCal2]
 gi|75535997|sp|Q4UK70|MNME_RICFE RecName: Full=tRNA modification GTPase mnmE
 gi|67005139|gb|AAY62065.1| tRNA modification GTPase TrmE [Rickettsia felis URRWXCal2]
          Length = 480

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 156/483 (32%), Positives = 250/483 (51%), Gaps = 52/483 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-------- 57
           ETIFA S+    + +++ R+SGP   +V + +  +    PR    +              
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRADFKPRIMYYQQITVPKTIVNSASF 61

Query: 58  ----------------------------GRILDKGLLIVFPSPESFTGEDSAEFHVHGGI 89
                                         ++D  +++ F SP SFTGED  E H HG  
Sbjct: 62  AYKEPRVEPITNRRATSDIVSEGGSIDYKELIDNAMVVYFKSPNSFTGEDVVEIHTHGSK 121

Query: 90  AVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEG 149
           A+   ++  L  + ++RLA  GEF++RAF N K DL  AE +ADLI++ET MQ R ++  
Sbjct: 122 AISIMLINALLNIADIRLAEAGEFTKRAFLNNKFDLTAAEGIADLINAETIMQHRQAIRQ 181

Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209
            SG L  LY  W  +L  I S +EA +DF + ED+ +    +V N    L N+IS++++ 
Sbjct: 182 ASGGLEELYNNWRTQLLKIISLLEAYIDFPD-EDIPDSVLNDVNNTHKNLVNEISNYLND 240

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            + GE++ +G K+ I+G  N GKSSL N L ++D+AIV++I GTTRD++   LD+ GY +
Sbjct: 241 NRRGELLNSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPI 300

Query: 270 KISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKNIDFI 323
            + DTAGIR E+ DI+E+EGIKR     + AD+ +++ +         ++I    N + I
Sbjct: 301 ILQDTAGIREESSDIIEQEGIKRAIHSAKTADIKIIMFDAEKLDSSINEDIMNLINENTI 360

Query: 324 FIGTKSDLYST---YTEEYDHLI---SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            I  K DL      ++ E  +     S      L  ++  I++I  N          +++
Sbjct: 361 TIINKIDLIEPNKIFSIENKYKCLRVSVKNNIALSSILKNIENIAENMAGFTETPYITNQ 420

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437
           RH ++L Q + +L   SL   D  L +  E++R+ +  +G ITG +++E++L  IF  FC
Sbjct: 421 RHRHYLKQALSHLTAFSL---DNDLVLATEDIRMTARCIGAITGVINIEEILGEIFKNFC 477

Query: 438 IGK 440
           IGK
Sbjct: 478 IGK 480


>gi|320450418|ref|YP_004202514.1| tRNA modification GTPase TrmE [Thermus scotoductus SA-01]
 gi|320150587|gb|ADW21965.1| tRNA modification GTPase TrmE [Thermus scotoductus SA-01]
          Length = 432

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 145/441 (32%), Positives = 237/441 (53%), Gaps = 17/441 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRYFFGLD-GRI 60
           K+ I A++T     AI ++RLSG    +V   + + K P   K    +L      + G +
Sbjct: 4   KDPICAIATPLGKGAIGVVRLSGEGALEVASRVWRGKDPRKLKGGRFTLGEVVDPETGEV 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ LL+VF +P S+TGED+ EFH HG +AV+  +LE L K    RLA PGEF+ RA+ N
Sbjct: 64  LDQALLLVFRAPRSYTGEDACEFHTHGSMAVLRRVLEALVKA-GARLAGPGEFTFRAYMN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++  L+ +E ++ RR ++  + G  S       D+L  + + I+A LD+ E
Sbjct: 123 GKLDLAQAEAVLALVEAEGDLARRQALRSLEGSFSRKIAALEDRLLSLLAHIQALLDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E V+   ++ V+ +   +  ++ + ++Q +   + + G ++ ++G  NAGKSSL NAL 
Sbjct: 183 -EGVEPLEARRVIGE---VLEEVEALLAQARSSRLAQRGARLALIGAPNAGKSSLLNALL 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + A+V+ IPGTTRD L   L+L G  +   DTAGIR+T D +E+ G++R     E AD
Sbjct: 239 GYERALVSPIPGTTRDYLEAPLELFGIPLVAVDTAGIRDTLDPLERAGVERALRIAEEAD 298

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           L+L + + ++ +    P     + + TK+DL   + +     +SS TGEGL +L   I+ 
Sbjct: 299 LVLYVADRSAPRPSLPPLPPRTLKVATKADLPPLWEDAEFIPVSSVTGEGLGQLKEAIRE 358

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
            L     K        +R +  L Q    L    L  ++   D++   L  A  +L  + 
Sbjct: 359 AL---LGKGGGEYLLSERQIEALHQARERL----LEAQNLPEDLMGLALEEALKALASLR 411

Query: 421 GC-VDVEQLLDIIFSKFCIGK 440
           G     E+++  +F  FC+GK
Sbjct: 412 GRKEVSEEVVARVFQNFCVGK 432


>gi|322437335|ref|YP_004219547.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX9]
 gi|321165062|gb|ADW70767.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX9]
          Length = 456

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 141/454 (31%), Positives = 238/454 (52%), Gaps = 17/454 (3%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFFGLDGR 59
           +   +TI A+ST      I ++RLSG     +   + + K      R    +      G 
Sbjct: 5   SFRNDTIVAISTPPGRGGIGVVRLSGADARAIALPMLRLKHALEPGRVRLAKIVDPESGE 64

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ ++ ++ +P S+T ED  E   H    ++  +L    +    RLA PGEF++RAF 
Sbjct: 65  VLDEAVVTLYEAPHSYTTEDVVEIACHSSPVLLEAVLRGCVQA-GARLAEPGEFTQRAFL 123

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           +G++DL +AE++ DLI + T  Q R++   + G LS +      +L  + + +EA +DF+
Sbjct: 124 SGRLDLTQAEAVHDLIEATTLHQARIAAAQLGGALSKIVAPIKRRLVELIAGLEAGVDFA 183

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +D+   +  E+   I  +++ + +  +    G I+R G+ + I+G  NAGKSSLFN L
Sbjct: 184 E-DDLDLMTEAEIAARIESVRDPLQALAATYDYGRIVREGFTLAIVGRPNAGKSSLFNRL 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE----GIKRTFLE 295
             +  AIVTD PGTTRD ++  + +EG  V++ DTAG+R   D  E E    GI+RT + 
Sbjct: 243 LVRQRAIVTDQPGTTRDAISERMSIEGIPVELIDTAGLRTAPDGPEGEAERQGIERTNVA 302

Query: 296 VENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLYS----TYTEEYDHLISSFT 347
           +  ADL+L + +  +      EI   +   ++ +  KSDL S        E     S+ T
Sbjct: 303 MAEADLVLHVVDGGALTKDIDEIVVAEARPYLRVLNKSDLLSAGVGAEASEGAIRTSALT 362

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIA 406
           GEG+EEL   I   L+        ++ ++ R    + Q V  LE+A++  +D    +++ 
Sbjct: 363 GEGIEELKRAIVMALTQTATPPESAVLTNVRQHGAIMQAVDALEIAAVAAQDGLPHELLL 422

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  A  +L ++TG    +++L++IFS FCIGK
Sbjct: 423 LDLYGALDALDRLTGATSADEILNLIFSTFCIGK 456


>gi|157804128|ref|YP_001492677.1| tRNA modification GTPase TrmE [Rickettsia canadensis str. McKiel]
 gi|166234816|sp|A8EZV9|MNME_RICCK RecName: Full=tRNA modification GTPase mnmE
 gi|157785391|gb|ABV73892.1| tRNA modification GTPase [Rickettsia canadensis str. McKiel]
          Length = 445

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/448 (35%), Positives = 248/448 (55%), Gaps = 17/448 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDKG 64
           ETIFA S+    + +++ R+SGP   +V + +  +K    R    +   F   G ++D  
Sbjct: 2   ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKDFKSRLMYYQQITFPESGELIDNA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F SP SFTGED AE + HG  A+   ++  L  +PN+RLA  GEF++RAF N K D
Sbjct: 62  MVVYFKSPGSFTGEDVAEIYTHGSKAISIMLINALLNIPNIRLAEAGEFTKRAFLNNKFD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L  AE +ADLI++ET MQ R ++    G L  LY  W ++L  I S +EA +DF + ED+
Sbjct: 122 LTAAEGIADLINAETIMQHRQAIRQAGGALEELYNNWREQLLQIISLLEAYIDFPD-EDI 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +    +V N    L N+IS++++  + GE++ +G K+ I+G  NAGKSSL N L ++D+
Sbjct: 181 PDSILNKVNNTHTNLINEISNYLNDNRRGELLNSGLKLAIIGPPNAGKSSLLNFLMQRDI 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIV++I GTTRD++   LD+ GY + + DTAGIR E+ DI+E+EGIKR     + AD+ +
Sbjct: 241 AIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTADIKI 300

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-----------SSFTGEGLE 352
           ++ +            ID I   T   +      E   +            S      L 
Sbjct: 301 IMFDAEKLDSSINEGIIDLIDENTIIIINKIDLIEPSKIFLIEDKYKCLRVSIKNNIALN 360

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
           +++  I++I  N          +++RH ++L Q + YL+  +L   D  L +  E++R+ 
Sbjct: 361 DILKNIENIAENMAGFTETPYITNQRHRHYLKQGLTYLKNFTL---DNDLVLATEDIRMT 417

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +G ITG ++V ++L  IF  FCIGK
Sbjct: 418 VRCIGTITGVINVNEILGEIFKNFCIGK 445


>gi|309775110|ref|ZP_07670122.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917065|gb|EFP62793.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 443

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 143/446 (32%), Positives = 246/446 (55%), Gaps = 15/446 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR---IL 61
            +TI A+ST A+  AISIIR+SG     + + I        +  ++ Y +  D     ++
Sbjct: 3   NDTIAAISTAAVDGAISIIRMSGTDALSIADSILNFNIKEKKSHTISYGYVYDQEHDELI 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ VF +P++FT ED  E + HGG  +   IL  L      RLANPGEF++RAF NG
Sbjct: 63  DEVLVSVFHAPKTFTCEDIVEINCHGGSFITKKIL-RLCLAHGARLANPGEFTQRAFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I ++T    R++M+G+ G +  L    + +L  I + IE ++D+ E 
Sbjct: 122 RIDLTQAEAVNDMIQADTNENARMAMQGIRGSVKKLLDPLLQELLDIIANIEVNIDYPEY 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +DV+  S++ +          I + + + + G++++ G K  I+G  N GKSSL NAL +
Sbjct: 182 DDVEQLSTEIIQPKARAWMKRIQNILDRAQSGQLLKEGIKTAIVGKPNVGKSSLLNALLE 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVTDI GTTRD++   + L+G  + + DTAGIRET D+VE+ GI+R+   + +A L
Sbjct: 242 EEKAIVTDIAGTTRDIVEGHIHLQGLTLNLIDTAGIRETSDVVEQIGIQRSLKAITDAQL 301

Query: 302 ILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           ++++ + +       ++ +   ++   I +  K+D+    ++  D +  +     +E LI
Sbjct: 302 VIVVLDNSRALDEQDRELLKLTRDKTRIIVYNKTDV----SKRSDGICIAAAKGEIEALI 357

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASV 414
            +I  +       L   +  ++R +  + +    +  A    E    LDI+  +++ A  
Sbjct: 358 AEIHKLFDRHQLVLQEPLLHNERQIALMMKAENSMHQALEAMEAGMELDIVEIDIQNAYT 417

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           SL +I G V  E LLD +FS FC+GK
Sbjct: 418 SLKEILGEVHREDLLDTLFSNFCLGK 443


>gi|47459397|ref|YP_016259.1| tRNA modification GTPase TrmE [Mycoplasma mobile 163K]
 gi|81828449|sp|Q6KH82|MNME_MYCMO RecName: Full=tRNA modification GTPase mnmE
 gi|47458727|gb|AAT28048.1| thiophene and furan oxidation protein [Mycoplasma mobile 163K]
          Length = 442

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/443 (34%), Positives = 237/443 (53%), Gaps = 9/443 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++TG    AISIIR+SG   F++ + I   K    +  +       + +I+D+ 
Sbjct: 2   FDTIAAIATGNSIQAISIIRISGSDSFKIVKKIFTGKIGKNKTITYGNILNHERKIVDEV 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+  F    +FTGE+S E   HGGI V N +L+ L      RLA  GEFSRR+F N K+D
Sbjct: 62  LVAWFEGTNNFTGENSVEIFCHGGIVVTNLVLQLLI-ANGARLAERGEFSRRSFLNKKMD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            ++AE++ DLI ++T  Q ++S+    G++S     +ID L ++ +  E ++D+ E +DV
Sbjct: 121 FVKAEAINDLIHAKTIRQAQISVNKFDGKISKDIESYIDTLLYLIATCETNIDYPEYDDV 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +N  ++ +L  I  L   ++  I   +   II NG KI I+G  N GKSSL NAL  ++ 
Sbjct: 181 ENLHNETLLPKIKELIQKLNDLIKISEKASIIYNGLKIAIVGKPNVGKSSLLNALLNEER 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+  GTTRDV+     ++G+L  ISDTAG+RE  + +E  GI++TF  +E +D+IL 
Sbjct: 241 AIVTNEAGTTRDVIEASFQIDGFLFSISDTAGLREVQNNIENLGIQKTFETIEKSDIILH 300

Query: 305 LKEINS-----KKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           + + N       K+I           I  K DL   + ++   +  S   + + EL NK+
Sbjct: 301 IIQPNEAENDFDKQIEIKSKNKIYLKILNKKDLIKNHNKQNHMIKISTLNKDIIELENKL 360

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLG 417
            S  ++     P ++   +  L  + ++   L  A    E     D++  ++  A  SL 
Sbjct: 361 SSYCNDVEWDNP-NLIYSQNQLSMIKKSYLALSEAKEGLESGLTPDVVIIDITKAWESLV 419

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
            I G  D E LLD +FS FC+GK
Sbjct: 420 NIKGKADNELLLDKMFSNFCLGK 442


>gi|294775319|ref|ZP_06740842.1| small GTP-binding protein domain protein [Bacteroides vulgatus
           PC510]
 gi|294450896|gb|EFG19373.1| small GTP-binding protein domain protein [Bacteroides vulgatus
           PC510]
          Length = 500

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/498 (29%), Positives = 237/498 (47%), Gaps = 63/498 (12%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL----- 56
            ++TI A++T     AI IIR+SGP   ++   I      KP   +A     FG      
Sbjct: 5   NQDTICAIATAQG-GAIGIIRVSGPKAIEITSRIFTPATGKPLTERAPYTLTFGKICSPK 63

Query: 57  -------------------------------DGRILDKGLLIVFPSPESFTGEDSAEFHV 85
                                             ++D+ L+ +F +P S+TGEDS E   
Sbjct: 64  RKINNTLFQQTSEIPQEKSETLQKTSSITSSAEEVIDEVLISLFRAPHSYTGEDSTEIMC 123

Query: 86  HGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRL 145
           HG   ++  +++ L      R A PGE+++RAF NGK+DL +AE++ADLI+S +    RL
Sbjct: 124 HGSSYILQQVIQLLI-YNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSASTHRL 182

Query: 146 SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS 205
           +M  M G  S       ++L H  S +E +LDFS+ E+++  +  E+ +    ++  I+ 
Sbjct: 183 AMSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELEFANRDELSSLATHIEQVIAR 242

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
                 +G  I+NG  + I+G +NAGKS+L NAL  ++ AIV+DI GTTRDV+   ++L+
Sbjct: 243 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 302

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISF 316
           G   +  DTAGIR+T+D +E  GI+RTF +++ A +IL + +    +          +  
Sbjct: 303 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWMIDSTDTQRRFEELKADILPH 362

Query: 317 PKNIDFIFIGTKSDLYSTYTEE-----------YDHLISSFTGEGLEELINKIKSILSNK 365
            +    I +  KSDL     +E               IS+   E +  L  K+    +  
Sbjct: 363 CEGKKMIILFNKSDLLLATQKEELSAIFADMKVEKLFISAKKRENITILEKKLVQAAALP 422

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASVSLGKIT--GC 422
                  I ++ RH   L++ +  +       + +   D+++E+LR     L +I   G 
Sbjct: 423 EVNQNDIIITNVRHYEALTRALDSIHRVQEGLQLELSGDLVSEDLRQCIHELSEIVAEGG 482

Query: 423 VDVEQLLDIIFSKFCIGK 440
           +  E+ L  IF  FCIGK
Sbjct: 483 ITSEETLQNIFQNFCIGK 500


>gi|288801153|ref|ZP_06406609.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332087|gb|EFC70569.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 456

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 155/460 (33%), Positives = 237/460 (51%), Gaps = 24/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFF---- 54
           MN+  +TI A++T     AI +IR+SG +   +          K     A+ R  F    
Sbjct: 1   MNN-NDTICALATAKG-GAIGVIRISGENAINIVAKCFEAASGKELEEMAAQRIIFGNIK 58

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             +G I+D+ L+ VF +P S+TGE++ E   HG   ++N IL+ L K    R A PGEF+
Sbjct: 59  DEEGNIIDEVLVSVFRAPHSYTGENTIEISCHGSTYIINTILQNLIKR-GCRQALPGEFT 117

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +R+F NGK+DL +AE++ADLI+S  +   +L++  + G  SS   +   KL  I S IE 
Sbjct: 118 QRSFLNGKMDLSQAEAVADLIASTNKATHQLALGQLRGYFSSELTELRKKLLKITSLIEL 177

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ +DV     +E+      +   I +     + G+ I+NG  + I+G +N GKS+
Sbjct: 178 ELDFSD-QDVTFADREELAELAQHINKKIKTLAKSFETGQAIKNGISVAIIGKTNVGKST 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L K++ AIV+DI GTTRDV+   +++     +  DTAGIR TDD VE  GI+RT+ 
Sbjct: 237 LLNCLLKEERAIVSDIHGTTRDVIEDTIEINNITFRFIDTAGIRNTDDTVENLGIERTYK 296

Query: 295 EVENADLILLLKE-INSKKEISFPK----NIDFIFIGTKSD-------LYSTYTEEYDHL 342
           ++  A +IL + + I +K+EI   +    N   I +  KSD       +           
Sbjct: 297 KLSEAIIILWVVDEIPTKEEIVEMQKQTINKKLIIVCNKSDEKQLSFPIDGIKDIAPIVS 356

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCG 401
           IS+   E +E L   I +            I ++ RH   L +    +E        D  
Sbjct: 357 ISAKFKENIECLEETIYTAADIPDVHENDVIVTNARHYEALIRAQESIERVIEGINNDLS 416

Query: 402 LDIIAENLRLASVSLGKITGCV-DVEQLLDIIFSKFCIGK 440
            D+++E+LR   VSL +ITG      ++L  IF  FCIGK
Sbjct: 417 GDLLSEDLRQCLVSLAEITGGFITSNEVLGNIFKHFCIGK 456


>gi|212692016|ref|ZP_03300144.1| hypothetical protein BACDOR_01511 [Bacteroides dorei DSM 17855]
 gi|212665408|gb|EEB25980.1| hypothetical protein BACDOR_01511 [Bacteroides dorei DSM 17855]
          Length = 500

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/498 (29%), Positives = 236/498 (47%), Gaps = 63/498 (12%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL----- 56
            ++TI A++T     AI IIR+SGP   ++   I      KP   +A     FG      
Sbjct: 5   NQDTICAIATAQG-GAIGIIRVSGPKAIEITSRIFTPATGKPLTERAPYTLTFGKICSPK 63

Query: 57  -------------------------------DGRILDKGLLIVFPSPESFTGEDSAEFHV 85
                                             ++D+ L+ +F +P S+TGEDS E   
Sbjct: 64  RKINNTLFQKTSEIPQEKSETLQKKESIIPSAEEVIDEVLISLFRAPHSYTGEDSTEIMC 123

Query: 86  HGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRL 145
           HG   ++  +++ L      R A PGE+++RAF NGK+DL +AE++ADLI+S +    RL
Sbjct: 124 HGSSYILQQVIQLLI-YNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSAATHRL 182

Query: 146 SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS 205
           +M  M G  S       ++L H  S +E +LDFS+ E+++  +  E+ +    ++  I+ 
Sbjct: 183 AMSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELEFANRDELSSLATHIEQVIAQ 242

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
                 +G  I+NG  + I+G +NAGKS+L NAL  ++ AIV+DI GTTRDV+   ++L+
Sbjct: 243 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 302

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISF 316
           G   +  DTAGIR+T+D +E  GI+RTF +++ A +IL + +    +          +  
Sbjct: 303 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWMIDSTDAQRRFEELKAEILPH 362

Query: 317 PKNIDFIFIGTKSDLYSTYTEE-----------YDHLISSFTGEGLEELINKIKSILSNK 365
            +    I +  KSDL     +E               IS+   E +  L  K+    +  
Sbjct: 363 CEGKKMIILFNKSDLLLAIQKEELSAIFADMKVEKLFISAKKRENITILEKKLVQAAALP 422

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASVSLGKIT--GC 422
                  I ++ RH   L++ +  +       +     D+++E+LR     L +I   G 
Sbjct: 423 EINQNDIIITNVRHYEALTRALDSIHRVQEGLQLGLSGDLVSEDLRQCIHELSEIVAEGG 482

Query: 423 VDVEQLLDIIFSKFCIGK 440
           +  E+ L  IF  FCIGK
Sbjct: 483 ITSEETLQNIFQNFCIGK 500


>gi|304373365|ref|YP_003856574.1| tRNA modification GTPase mnmE [Mycoplasma hyorhinis HUB-1]
 gi|304309556|gb|ADM22036.1| tRNA modification GTPase mnmE [Mycoplasma hyorhinis HUB-1]
          Length = 444

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 149/444 (33%), Positives = 250/444 (56%), Gaps = 10/444 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FPRKASLRYFFGLDGRILDK 63
           K+TI A+++G +  AISIIR+SGP  F     I K +     R+ +  +    +G ++D+
Sbjct: 3   KDTIVAIASGQVNQAISIIRISGPEAFATVAKIFKGRVGTTSREVTYGWIHN-NGELIDE 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L++ F    +F GED+ E + HGG+   N ILE L   P++RLA  GEFSRR+F NGK+
Sbjct: 62  VLVLWFKGTNNFVGEDTVEINAHGGVLNTNLILELLLSQPHVRLAERGEFSRRSFLNGKM 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++A+++ DLI + T+ Q +LS++  SG+ S    + I+ L +I + IE ++D+ E +D
Sbjct: 122 DLIKAQAIHDLIMARTKKQAQLSIKQFSGKTSIFINELINDLLNIIAIIEVNIDYPEYDD 181

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V+  +++ +L  +  L       I   +   II  G K+ ++G  N GKSSL NAL ++D
Sbjct: 182 VEVLTTEVLLPKLEALLAKFEKTIEASERSRIIFEGIKVALVGTPNVGKSSLLNALIEQD 241

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +IV+D+ GTTRDV+     L   + K+ DTAG+R+  + +E+ GIK++  ++E A +++
Sbjct: 242 KSIVSDVAGTTRDVVEASFVLSDIVFKLVDTAGVRKAKNKIEQIGIKKSLEQIEKASIVI 301

Query: 304 LLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            + +   ++           KN D+I +  K DL  +  +  D ++ S   + + +L + 
Sbjct: 302 HIIDATKQENEFDKLIQEHSKNKDYIKVYNKKDLNPSNFDASDKILISAKHKDISQLESY 361

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSL 416
           +K    NK  +    I S+ R L  +     YL+ A L+ K+    DI+  +L  +   L
Sbjct: 362 MKKHFVNKISENEE-IISNTRSLSFIKSAFSYLKDAFLSLKNGFSPDIVIVDLTQSWKDL 420

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
             ITG +  + LLD IF+ FC+GK
Sbjct: 421 KTITGELTSDSLLDTIFANFCLGK 444


>gi|150006140|ref|YP_001300884.1| tRNA modification GTPase TrmE [Bacteroides vulgatus ATCC 8482]
 gi|254883528|ref|ZP_05256238.1| tRNA modification GTPase TrmE [Bacteroides sp. 4_3_47FAA]
 gi|205829059|sp|A6L6E8|MNME_BACV8 RecName: Full=tRNA modification GTPase mnmE
 gi|149934564|gb|ABR41262.1| putative GTPase, ThdF family [Bacteroides vulgatus ATCC 8482]
 gi|254836321|gb|EET16630.1| tRNA modification GTPase TrmE [Bacteroides sp. 4_3_47FAA]
          Length = 500

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/498 (29%), Positives = 237/498 (47%), Gaps = 63/498 (12%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL----- 56
            ++TI A++T     AI IIR+SGP   ++   I      KP   +A     FG      
Sbjct: 5   NQDTICAIATAQG-GAIGIIRVSGPKAIEITSRIFTPATGKPLTERAPYTLTFGKICSPK 63

Query: 57  -------------------------------DGRILDKGLLIVFPSPESFTGEDSAEFHV 85
                                             ++D+ L+ +F +P S+TGEDS E   
Sbjct: 64  RKINNTLFQQTSEIPQEKSETLQKTSSITSSAEEVIDEVLISLFRAPHSYTGEDSTEIMC 123

Query: 86  HGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRL 145
           HG   ++  +++ L      R A PGE+++RAF NGK+DL +AE++ADLI+S +    RL
Sbjct: 124 HGSSYILQQVIQLLI-YNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSASTHRL 182

Query: 146 SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS 205
           +M  M G  S       ++L H  S +E +LDFS+ E+++  +  E+ +    ++  I+ 
Sbjct: 183 AMSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELEFANRDELSSLATHIEQVIAR 242

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
                 +G  I+NG  + I+G +NAGKS+L NAL  ++ AIV+DI GTTRDV+   ++L+
Sbjct: 243 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 302

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISF 316
           G   +  DTAGIR+T+D +E  GI+RTF +++ A +IL + +    +          +  
Sbjct: 303 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWMIDSTDAQRRFEELKADILPH 362

Query: 317 PKNIDFIFIGTKSDLYSTYTEE-----------YDHLISSFTGEGLEELINKIKSILSNK 365
            +    I +  KSDL     +E               IS+   E +  L  K+    +  
Sbjct: 363 CEGKKMIILFNKSDLLLATQKEELSAIFADMKVEKLFISAKKRENITILEKKLVQAAALP 422

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASVSLGKIT--GC 422
                  I ++ RH   L++ +  +       + +   D+++E+LR     L +I   G 
Sbjct: 423 EVNQNDIIITNVRHYEALTRALDSIHRVQEGLQLELSGDLVSEDLRQCIHELSEIVAEGG 482

Query: 423 VDVEQLLDIIFSKFCIGK 440
           +  E+ L  IF  FCIGK
Sbjct: 483 ITSEETLQNIFQNFCIGK 500


>gi|307718005|ref|YP_003873537.1| tRNA modification GTPase [Spirochaeta thermophila DSM 6192]
 gi|306531730|gb|ADN01264.1| tRNA modification GTPase [Spirochaeta thermophila DSM 6192]
          Length = 449

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/454 (31%), Positives = 225/454 (49%), Gaps = 19/454 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           M    + I A++T    SAI++IR SG  C +  + + + +K            G     
Sbjct: 1   MYRLDDRIVALATPWGRSAIAVIRTSGVGCLEALDPLFRGRKRPSSMRGYSLAHGALVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G +LD+ LL VF +P S+TGED+AE   HG  A V  I+  L      R A PGEF+ 
Sbjct: 61  GTGEMLDEVLLAVFRAPHSYTGEDAAEISCHGSPAGVERIMRTLL-AHGFRAAEPGEFTL 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NGK+DL EAE++ +++S+ T     L++  + G L +      +K+  + + +E  
Sbjct: 120 RAFLNGKVDLTEAEAVHEVVSARTANAHTLALHRLEGRLHARIDAIKEKIASVVAEVEVQ 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LD+ E EDV++  S  ++ + L    ++   ++  ++G + R G ++V+ G +NAGKSSL
Sbjct: 180 LDYPE-EDVEHPVSAHLIQEALH---EVDGLLATYRVGRLYREGVRVVLAGRTNAGKSSL 235

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
           FN   ++D AIV+++ GTTRD L   + L+G  V + DTAGIR+  D VE EGI+RT   
Sbjct: 236 FNLFMREDRAIVSEVHGTTRDYLEGWISLKGVPVLLYDTAGIRDGGDPVETEGIRRTREI 295

Query: 296 VENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYSTY-TEEYDHLISSFT 347
           + +AD ++ L +                      I +  K D  +     E    +S  T
Sbjct: 296 LSHADAVIYLVDGTEGFSEGEEALIAELGAERPLIPVWNKVDASAVLPPPEGFIPLSCRT 355

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIA 406
           GEG   L   +  +           +   +R    L +    LE       +   LD +A
Sbjct: 356 GEGFARLEETLHRVFPEAEGGGAEVVIDSERQRDALVRCRDSLEGGLDALSRGAPLDALA 415

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L  A  +LG+ITG V  E +L+ IFS FC+GK
Sbjct: 416 VYLHDAMEALGEITGEVTREDILERIFSCFCVGK 449


>gi|262118591|pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
           Complex With Gdp And Folinic Acid
 gi|262118593|pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
           Complex With Gcp
 gi|262118594|pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
           Complex With Gcp
 gi|262118595|pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
           Complex With Gcp
          Length = 476

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/462 (33%), Positives = 242/462 (52%), Gaps = 30/462 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK---KKPFPRKASLRYFFG--LDGR-I 60
            I A++T     A++I+R+SG     + + + +K          A     FG   DG  +
Sbjct: 17  PIAAIATPVGVGALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDGEEM 76

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ + +VF +P SFT E   EF  HGG  VV  +L  L      RLA PGEF+RRAF N
Sbjct: 77  VDEVIALVFRAPRSFTAEQMVEFTCHGGPVVVGRVL-RLMLDNGCRLAEPGEFTRRAFLN 135

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDLL+AE++ ++I + TE   R ++  M G+LS   G   ++L    + IE +LDFSE
Sbjct: 136 GRIDLLQAEAIGEMIHARTESAYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSE 195

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            EDV+  S  E+   I  L+++++  I   + G I+  G   VI G  NAGKS+L N L 
Sbjct: 196 -EDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLL 254

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV+ +PGTTRD +      +  + +++DTAG+RE  + +E EGI+R+ +++  AD
Sbjct: 255 GQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEAD 314

Query: 301 LILLLKEINSKK------EISFPKNID----FIFIGTKSDLYSTY----------TEEYD 340
           LIL L ++ +++      EI   K       F+ +  K D  +            T    
Sbjct: 315 LILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTGTEV 374

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEK 398
             IS+  G+G++ L   +  ++ N  K    S+  +  RH   L      L+ A  L   
Sbjct: 375 IGISALNGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALELIAH 434

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   ++IA  LR A   +G+ITG V  E++L+ IF KFCIGK
Sbjct: 435 ESETELIAFELRAALDYVGQITGKVVNEEVLNTIFDKFCIGK 476


>gi|331002965|ref|ZP_08326477.1| tRNA modification GTPase TrmE [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330413009|gb|EGG92384.1| tRNA modification GTPase TrmE [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 456

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/454 (34%), Positives = 244/454 (53%), Gaps = 21/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILD 62
           +TI A++T    S I IIR+SG     + + I   KK      S    +G    +  I+D
Sbjct: 5   DTIAAIATALGESGIGIIRISGEDAVSIADKIYNGKKTLREADSHTINYGHIFFEEEIID 64

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+++  +P +FTGED+ E + HGGI ++  IL  +      R+A PGEF++RAF NGK
Sbjct: 65  EVLVMLMKAPRTFTGEDTVEINCHGGILILEKILHAVI-ASGARMAFPGEFTKRAFLNGK 123

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ D+I ++ ++  +  +  +SG L+        K+    +FIEA LD  E  
Sbjct: 124 MDLSQAEAVIDIIEAKNDLALKAGIRQLSGALTENIKDIRAKILEQIAFIEAALDDPEHY 183

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +  +S K++   +  L   I       K G II+ G   VI+G  NAGKSS+ N L++ 
Sbjct: 184 SLDGYS-KKLRKIVNKLITRIEYLKKSFKDGSIIKEGINTVIIGKPNAGKSSILNLLSRT 242

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVTDI GTTRD LT ++ L G  + I+DTAGIR+TDD+VE  G+++      NADL 
Sbjct: 243 DRAIVTDIAGTTRDTLTENIKLSGISLNITDTAGIRQTDDVVESIGVQKAIEASNNADLN 302

Query: 303 LLLKE---INSKKEISFP---KNIDFIFIGTKSDL--------YSTYTEEYDHLISSFTG 348
           L++ +      K++I      KN + I +  KSD            Y+ +   + S+   
Sbjct: 303 LVVIDGLMPLDKEDIELLESVKNKNAIILINKSDKELKIGVEDIKKYSSKDVIIFSAKEN 362

Query: 349 EGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIA 406
            G++EL N IKS  +SN+       I ++ RH   +++T+  LEM  S  ++    D   
Sbjct: 363 IGVDELENMIKSKFISNEINFNDQVIITNIRHQEIINETLESLEMCISSIDEGYEEDFFT 422

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L     +LG+I G    + +++ IFSKFC+GK
Sbjct: 423 IDLLNGYEALGEIIGETVDDDVVNEIFSKFCMGK 456


>gi|330800057|ref|XP_003288056.1| hypothetical protein DICPUDRAFT_152248 [Dictyostelium purpureum]
 gi|325081944|gb|EGC35443.1| hypothetical protein DICPUDRAFT_152248 [Dictyostelium purpureum]
          Length = 503

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/476 (34%), Positives = 258/476 (54%), Gaps = 41/476 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGL-DGRIL 61
           K+TIF +S+G   S ++I+R+SGP    V + + KK    P  R A+L  F+       +
Sbjct: 29  KDTIFNLSSGVGKSGVAIVRVSGPDSKLVLKELTKKSNIEPKERLATLSTFYHPKTNEQV 88

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           DKG+ + FPSP SFTGED  EFH+HGG AV++  L+ ++ +   R +  GEF+RRAFENG
Sbjct: 89  DKGIFVWFPSPNSFTGEDVVEFHIHGGRAVISETLDAISSVDGTRPSEQGEFTRRAFENG 148

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL + E L+DL+ + T  Q++++++ M G +   Y      L    +++EA +DF ++
Sbjct: 149 KMDLTQIEGLSDLLDASTSYQKKIALKQMQGSIGQFYFSLRKDLIRASAYMEAFIDFGDD 208

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            ++ N + ++    I+ +++ I +H+  G+ GE +R+G  I I+G  N+GKSSL N L+ 
Sbjct: 209 AEIDNETVEQSKRSIIAIRDKIQAHLDDGRRGERLRDGASIAIVGPPNSGKSSLINLLSN 268

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300
           +  +IV+ I GTTRD++ + LD+ GY V I DTAG+R  T+DI+EKEGI+        +D
Sbjct: 269 RKASIVSPIAGTTRDIVEVTLDIGGYPVVIGDTAGLRLSTNDIIEKEGIEMAKDRFNQSD 328

Query: 301 LILLLKEINSKKEISFPKNID------------FIFIGTKSDLYSTYTEE---------- 338
           + L L + N    +    N +             I I  K DL    +++          
Sbjct: 329 IKLFLFDSNQLFNLDNNSNDNELENLLNFIDNETIIIFNKFDLIKNSSQDKWSQLKSNIL 388

Query: 339 ------------YDHLISSFTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLS 384
                           IS      ++ELI+ +K  LSN F+       + +  R+  HL+
Sbjct: 389 EKIKTKNNLTNVQSIEISCNENIKIKELISLLKLNLSNMFEMNDQESPLLTRARYKQHLT 448

Query: 385 QTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + V  L+   L   D  + I +E LR A +S+  IT  VD+  LLD+IF  FCIGK
Sbjct: 449 ECVESLDRY-LYYCDEDIVIASEELRRALLSISAITHPVDLNDLLDVIFRDFCIGK 503


>gi|253563506|ref|ZP_04840963.1| tRNA modification GTPase mnmE [Bacteroides sp. 3_2_5]
 gi|251947282|gb|EES87564.1| tRNA modification GTPase mnmE [Bacteroides sp. 3_2_5]
          Length = 465

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/470 (30%), Positives = 239/470 (50%), Gaps = 35/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-----KKKKPFPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP    +   I       K     +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGSIRVSGPEAITITSRIFTPAKSGKLLSEQKPYTLTFGRI 57

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            +G  ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE++
Sbjct: 58  YNGEEMIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL++  M G  S       +KL +  S IE 
Sbjct: 117 QRAFLNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELTTLREKLLNFTSMIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFSE EDV+      +      ++  I+   +   +G +I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSE-EDVEFADRSALRRLADEIEEVIARLANSFSVGNVIKNGVPVAIIGETNAGKST 235

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET D +E  GI+RTF 
Sbjct: 236 LLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQ 295

Query: 295 EVENADLILLLKE-INSKKEISFP--------KNIDFIFIGTKSDLYST----------- 334
           +++ A+++L + +  ++  +++          ++   I +  K +L +            
Sbjct: 296 KLDQAEIVLWMIDSADAISQLTLLSDKILPRCEHKQLILVFNKVELINETQKNELASQFS 355

Query: 335 ---YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
               +E     IS+      +EL  ++ +            I ++ RH   L++ +  + 
Sbjct: 356 EHIGSEIESIFISAKQRLHTDELQQRLVAAAHLPTVTQNDVIVTNIRHYEALTRALDAIH 415

Query: 392 MASLNEK-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                   +   D +++++R     L  I G V  + +L  IF+ FCIGK
Sbjct: 416 RVQEGLDVNISGDFLSQDIRECIFHLSDIAGEVTNDMVLQNIFAHFCIGK 465


>gi|209966078|ref|YP_002298993.1| tRNA modification GTPase TrmE [Rhodospirillum centenum SW]
 gi|209959544|gb|ACJ00181.1| tRNA modification GTPase TrmE [Rhodospirillum centenum SW]
          Length = 439

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/445 (40%), Positives = 254/445 (57%), Gaps = 15/445 (3%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILD 62
             +TIFA +T      + ++RLSGP        +  +  P PR+A+L        G + D
Sbjct: 2   TTDTIFAPATAPGRGGVQVVRLSGPLAGPALVRLSGR-LPPPRQATLASLHDPAGGEVFD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LL+ FP+P SFTGED AE H+HGG AV+     E      LR+A PGEFSRRAFE+GK
Sbjct: 61  RALLLWFPAPASFTGEDVAELHLHGGRAVLAAA-AEALTALGLRVAEPGEFSRRAFEHGK 119

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL EAE++ADL+++ET  QRR ++  M G L  LY  W  +L    + +EA++DF E E
Sbjct: 120 LDLTEAEAIADLVAAETAAQRRQALRQMDGALGRLYEDWRHRLVRALAHLEAEIDFPE-E 178

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+    +  V   +  L  +I++H++ G  GE +R+G  I ILG  NAGKSSL NA+A++
Sbjct: 179 DLPGGLTDSVRPVVRDLLAEIAAHLADGHRGERLRDGIAIAILGAPNAGKSSLLNAIARR 238

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           DVAIV+   GTTRDV+ + LDL GY V ++DTAG+RET D VE EGI+R       ADL 
Sbjct: 239 DVAIVSAQAGTTRDVIEVALDLGGYPVTLADTAGLRETLDAVESEGIRRALDRAARADLT 298

Query: 303 LLLKEINSKKEIS--FPKNIDFIFIGTKSDLYSTYTEEYDHLI----SSFTGEGLEELIN 356
           LL+ +     + +       D + +  K+DL      E         S+ TG+GL  L+ 
Sbjct: 299 LLVFDATLPPDPATLALAGEDALVVLNKADLAGELPSEVAGRPALAVSAATGQGLAALLA 358

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAENLRLASVS 415
            + + +  ++        +  RH   L      L  A     +  L ++ AE++RLA+ +
Sbjct: 359 TLTAAVEMRYAPAAAPSLTRARHRAALEACGASLARAL----EAPLPELAAEDVRLAARA 414

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG+ITG VDVE LLD+IF  FCIGK
Sbjct: 415 LGRITGRVDVEDLLDVIFRDFCIGK 439


>gi|237708959|ref|ZP_04539440.1| tRNA modification GTPase TrmE [Bacteroides sp. 9_1_42FAA]
 gi|265756268|ref|ZP_06090597.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_33FAA]
 gi|229457021|gb|EEO62742.1| tRNA modification GTPase TrmE [Bacteroides sp. 9_1_42FAA]
 gi|263233859|gb|EEZ19468.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_33FAA]
          Length = 498

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/498 (29%), Positives = 236/498 (47%), Gaps = 63/498 (12%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL----- 56
            ++TI A++T     AI IIR+SGP   ++   I      KP   +A     FG      
Sbjct: 3   NQDTICAIATAQG-GAIGIIRVSGPKAIEITSRIFTPATGKPLTERAPYTLTFGKICSPK 61

Query: 57  -------------------------------DGRILDKGLLIVFPSPESFTGEDSAEFHV 85
                                             ++D+ L+ +F +P S+TGEDS E   
Sbjct: 62  RKINNTLFQKTSEIPQEKSETLQKKESIIPSAEEVIDEVLISLFRAPHSYTGEDSTEIMC 121

Query: 86  HGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRL 145
           HG   ++  +++ L      R A PGE+++RAF NGK+DL +AE++ADLI+S +    RL
Sbjct: 122 HGSSYILQQVIQLLI-YNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSAATHRL 180

Query: 146 SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS 205
           +M  M G  S       ++L H  S +E +LDFS+ E+++  +  E+ +    ++  I+ 
Sbjct: 181 AMSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELEFANRDELSSLATHIEQVIAQ 240

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
                 +G  I+NG  + I+G +NAGKS+L NAL  ++ AIV+DI GTTRDV+   ++L+
Sbjct: 241 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 300

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISF 316
           G   +  DTAGIR+T+D +E  GI+RTF +++ A +IL + +    +          +  
Sbjct: 301 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWMIDSTDAQRRFEELKAEILPH 360

Query: 317 PKNIDFIFIGTKSDLYSTYTEE-----------YDHLISSFTGEGLEELINKIKSILSNK 365
            +    I +  KSDL     +E               IS+   E +  L  K+    +  
Sbjct: 361 CEGKKMIILFNKSDLLLAIQKEELSAIFADMKVEKLFISAKKRENITILEKKLVQAAALP 420

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASVSLGKIT--GC 422
                  I ++ RH   L++ +  +       +     D+++E+LR     L +I   G 
Sbjct: 421 EINQNDIIITNVRHYEALTRALDSIHRVQEGLQLGLSGDLVSEDLRQCIHELSEIVAEGG 480

Query: 423 VDVEQLLDIIFSKFCIGK 440
           +  E+ L  IF  FCIGK
Sbjct: 481 ITSEETLQNIFQNFCIGK 498


>gi|330723738|gb|AEC46108.1| tRNA modification GTPase TrmE [Mycoplasma hyorhinis MCLD]
          Length = 444

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 149/444 (33%), Positives = 250/444 (56%), Gaps = 10/444 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FPRKASLRYFFGLDGRILDK 63
           K+TI A+++G +  AISIIR+SGP  F     I K +     R+ +  +    +G ++D+
Sbjct: 3   KDTIVAIASGQVNQAISIIRISGPEAFTTVAKIFKGRVGTTSREVTYGWIHN-NGELIDE 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L++ F    +F GED+ E + HGG+   N ILE L   P++RLA  GEFSRR+F NGK+
Sbjct: 62  VLVLWFKGTNNFVGEDTVEINAHGGVLNTNLILELLLSQPHVRLAERGEFSRRSFLNGKM 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++A+++ DLI + T+ Q +LS++  SG+ S    + I+ L +I + IE ++D+ E +D
Sbjct: 122 DLIKAQAIHDLIMARTKKQAQLSIKQFSGKTSIFINELINDLLNIIAIIEVNIDYPEYDD 181

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V+  +++ +L  +  L       I   +   II  G K+ ++G  N GKSSL NAL ++D
Sbjct: 182 VEVLTTEVLLPKLEALLAKFEKTIEASERSRIIFEGIKVALVGTPNVGKSSLLNALIEQD 241

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +IV+D+ GTTRDV+     L   + K+ DTAG+R+  + +E+ GIK++  ++E A +++
Sbjct: 242 KSIVSDVAGTTRDVVEASFVLSDIVFKLVDTAGVRKAKNKIEQIGIKKSLEQIEKASIVI 301

Query: 304 LLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            + +   ++           KN D+I +  K DL  +  +  D ++ S   + + +L + 
Sbjct: 302 HIIDATKQENEFDKLIQEHSKNKDYIKVYNKKDLNPSNFDASDKILISAKHKDISQLESY 361

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSL 416
           +K    NK  +    I S+ R L  +     YL+ A L+ K+    DI+  +L  +   L
Sbjct: 362 MKKHFVNKISENEE-IISNTRSLSFIKSAFSYLKDAFLSLKNGFSPDIVIVDLTQSWKDL 420

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
             ITG +  + LLD IF+ FC+GK
Sbjct: 421 KTITGELTSDSLLDTIFANFCLGK 444


>gi|319641684|ref|ZP_07996367.1| tRNA modification GTPase mnmE [Bacteroides sp. 3_1_40A]
 gi|317386658|gb|EFV67554.1| tRNA modification GTPase mnmE [Bacteroides sp. 3_1_40A]
          Length = 498

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/498 (29%), Positives = 237/498 (47%), Gaps = 63/498 (12%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL----- 56
            ++TI A++T     AI IIR+SGP   ++   I      KP   +A     FG      
Sbjct: 3   NQDTICAIATAQG-GAIGIIRVSGPKAIEITSRIFTPATGKPLTERAPYTLTFGKICSPK 61

Query: 57  -------------------------------DGRILDKGLLIVFPSPESFTGEDSAEFHV 85
                                             ++D+ L+ +F +P S+TGEDS E   
Sbjct: 62  RKINNTLFQQTSEIPQEKSETLQKTSSITSSAEEVIDEVLISLFRAPHSYTGEDSTEIMC 121

Query: 86  HGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRL 145
           HG   ++  +++ L      R A PGE+++RAF NGK+DL +AE++ADLI+S +    RL
Sbjct: 122 HGSSYILQQVIQLLI-YNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSASTHRL 180

Query: 146 SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS 205
           +M  M G  S       ++L H  S +E +LDFS+ E+++  +  E+ +    ++  I+ 
Sbjct: 181 AMSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELEFANRDELSSLATHIEQVIAR 240

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
                 +G  I+NG  + I+G +NAGKS+L NAL  ++ AIV+DI GTTRDV+   ++L+
Sbjct: 241 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 300

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISF 316
           G   +  DTAGIR+T+D +E  GI+RTF +++ A +IL + +    +          +  
Sbjct: 301 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWMIDSTDAQRRFEELKADILPH 360

Query: 317 PKNIDFIFIGTKSDLYSTYTEE-----------YDHLISSFTGEGLEELINKIKSILSNK 365
            +    I +  KSDL     +E               IS+   E +  L  K+    +  
Sbjct: 361 CEGKKMIILFNKSDLLLATQKEELSAIFADMKVEKLFISAKKRENITILEKKLVQAAALP 420

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASVSLGKIT--GC 422
                  I ++ RH   L++ +  +       + +   D+++E+LR     L +I   G 
Sbjct: 421 EVNQNDIIITNVRHYEALTRALDSIHRVQEGLQLELSGDLVSEDLRQCIHELSEIVAEGG 480

Query: 423 VDVEQLLDIIFSKFCIGK 440
           +  E+ L  IF  FCIGK
Sbjct: 481 ITSEETLQNIFQNFCIGK 498


>gi|94971754|ref|YP_593802.1| tRNA modification GTPase TrmE [Candidatus Koribacter versatilis
           Ellin345]
 gi|205829050|sp|Q1IHC2|MNME_ACIBL RecName: Full=tRNA modification GTPase mnmE
 gi|94553804|gb|ABF43728.1| tRNA modification GTPase trmE [Candidatus Koribacter versatilis
           Ellin345]
          Length = 454

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/457 (31%), Positives = 238/457 (52%), Gaps = 20/457 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-----G 55
           MN + +TI A++T      I ++RL+GP    V   + +         + R  F      
Sbjct: 1   MNLD-DTIVAIATPPGRGGIGVVRLAGPEARTVALLMLRLANGKAELEAQRAHFAELVDP 59

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G  LD+ ++  F  P S+T +D  E   HG   ++  ++E LA    +R+A+PGEF+ 
Sbjct: 60  ESGERLDEVVVAYFAKPHSYTTDDIVEISCHGSPVLLARVVE-LALAKGVRMADPGEFTM 118

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ DLI S+T  Q R++ + + G +S        KL ++ + +EA 
Sbjct: 119 RAFLNGRIDLTQAEAVRDLIESQTLYQARVAAQQLGGSVSRRLQPTKQKLVNLIAVLEAG 178

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF++ +DV    +KE +  I  +   ++        G+++  G  + I+G  N GKSSL
Sbjct: 179 IDFAD-DDVSVLPAKEAIARIAEVHEPLAKLKEGFAFGKVVHEGLTLAIVGRPNVGKSSL 237

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
           FN L ++D AIVT IPGTTRD++T  + L G  V + DTAGIRE+ D  E  GI+++   
Sbjct: 238 FNRLVERDRAIVTAIPGTTRDLVTETVSLGGIPVHLVDTAGIRESHDEAESIGIQKSREA 297

Query: 296 VENADLILLLKEINSK-------KEISFPKNIDFIFIGTKSDL----YSTYTEEYDHLIS 344
           + +ADL+L++ + +++       + IS       I +  K DL     +          S
Sbjct: 298 MADADLVLVVVDAHAETGHELDHQLISAAAERSAILVENKIDLGRHSVANGKSIPVVRTS 357

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLD 403
           + +GEG+ EL  +I  ++S +  +      ++ R    ++ ++  LE A+   E     +
Sbjct: 358 AVSGEGIAELREQILRMVSGESGREESGFLTNIRQHQLVTDSLAALEAATNALEVRVPHE 417

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +L  A   L  ITG    + +L++IFS FCIGK
Sbjct: 418 MVLMDLYNALRPLDDITGATTADDILNLIFSTFCIGK 454


>gi|265762625|ref|ZP_06091193.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_16]
 gi|263255233|gb|EEZ26579.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_16]
          Length = 465

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 143/470 (30%), Positives = 239/470 (50%), Gaps = 35/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-----KKKKPFPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP    +   I       K     +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGSIRVSGPEAITITGRIFTPAKSGKLLSEQKPYTLTFGRI 57

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            +G  ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE++
Sbjct: 58  YNGEEMIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL++  M G  S       +KL +  S IE 
Sbjct: 117 QRAFLNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELTTLREKLLNFTSMIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFSE EDV+      +      ++  I+   +   +G +I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSE-EDVEFADRSALRRLADEIEEVIARLANSFSVGNVIKNGVPVAIIGETNAGKST 235

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET D +E  GI+RTF 
Sbjct: 236 LLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQ 295

Query: 295 EVENADLILLLKE-INSKKEISFP--------KNIDFIFIGTKSDLY-STYTEEYDHLIS 344
           +++ A+++L + +  ++  +++          ++   I +  K +L   T   E     S
Sbjct: 296 KLDQAEIVLWMIDSADAISQLTLLSDKILPRCEHKQLILVFNKVELINETQKNELASQFS 355

Query: 345 SFTGEGLE-------------ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
              G  +E             EL  ++ +            I ++ RH   L++ +  + 
Sbjct: 356 EHIGSEIESIFISAKQRLYTDELQQRLVAAAHLPAVTQNDVIVTNVRHYEALTRALDAIH 415

Query: 392 MASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 + +   D +++++R     L  I G V  + +L  IF+ FCIGK
Sbjct: 416 RVQEGLDANISGDFLSQDIRECIFHLSDIAGEVTNDMVLQNIFAHFCIGK 465


>gi|260592851|ref|ZP_05858309.1| tRNA modification GTPase TrmE [Prevotella veroralis F0319]
 gi|260535221|gb|EEX17838.1| tRNA modification GTPase TrmE [Prevotella veroralis F0319]
          Length = 463

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/454 (28%), Positives = 227/454 (50%), Gaps = 21/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA------SLRYFFGLDGR 59
           +TI A++T     AI ++R+SG    ++ E + +     P                 DG+
Sbjct: 12  DTITALATQPG-GAIGVVRVSGAKAIELTEKVFRGVGKKPLHEAKGNTLHYGVIVDKDGK 70

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D  L+ VF +P S+TGEDS E   HG   V+N +++ L      R A PGE+++RA+ 
Sbjct: 71  EIDDVLVSVFRAPHSYTGEDSTEVSCHGSAYVLNQVVKALI-DAGCRQARPGEYTQRAYL 129

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI++      ++++  + G  SS   +  D+L  + S +E +LDFS
Sbjct: 130 NGKMDLSQAEAVADLIAATNRASHQVALSQLKGHFSSELSKLRDQLLKMTSLLELELDFS 189

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + E+++     ++      +   IS  I   + G  ++ G  + I+G +N GKS+L N L
Sbjct: 190 DHEELEFADRGQLKALAETIHERISVLIKSFETGNALKRGVPVAIIGKTNVGKSTLLNCL 249

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIV++I GTTRDV+    +++G   +  DTAG+R TDD VE+ GI+R++ ++  A
Sbjct: 250 LHEEKAIVSNIHGTTRDVIEDTTEIQGITFRFIDTAGLRNTDDQVEQLGIERSYKKLAEA 309

Query: 300 DLILLLKEINSK-----KEISFPKNIDFIFIGTKSD------LYSTYTEEYDHLISSFTG 348
            +IL + +   +        +  +    I +  K D      + ++ +      IS+   
Sbjct: 310 RIILWVVDTPPRTSELSDMQARCEGKSLILVRNKVDESAAEEVSASDSPCPVVAISAKYK 369

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAE 407
             +++L   I +  +         I +  RH   L++    +         +   D+I+E
Sbjct: 370 RNIDQLEQLIYTSANIPEINENSVIITSVRHYEALTRANESIRRVIEALATNLSGDLISE 429

Query: 408 NLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           +LR+    L  IT G +   ++L  IF  FCIGK
Sbjct: 430 DLRICLNELADITGGQITPHEVLGNIFKHFCIGK 463


>gi|60680664|ref|YP_210808.1| tRNA modification GTPase TrmE [Bacteroides fragilis NCTC 9343]
 gi|81316267|sp|Q5LG80|MNME_BACFN RecName: Full=tRNA modification GTPase mnmE
 gi|60492098|emb|CAH06861.1| putative tRNA modification GTPase [Bacteroides fragilis NCTC 9343]
          Length = 465

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/470 (30%), Positives = 240/470 (51%), Gaps = 35/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-----KKKKPFPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP    +   I       K     +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGSIRVSGPEAITITGRIFTPAKSGKLLSEQKPYTLTFGRI 57

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            +G  ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE++
Sbjct: 58  YNGEEMIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL++  M G  S       +KL +  S IE 
Sbjct: 117 QRAFLNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELTTLREKLLNFTSMIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFSE EDV+      +      ++  I+   +   +G +I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSE-EDVEFADRSALRRLADEIEEVIARLANSFSVGNVIKNGVPVAIIGETNAGKST 235

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET D +E  GI+RTF 
Sbjct: 236 LLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQ 295

Query: 295 EVENADLILLLKE-INSKKEISFP--------KNIDFIFIGTKSDLYST----------- 334
           +++ A+++L + +  ++  +++          ++   I +  K +L +            
Sbjct: 296 KLDQAEIVLWMIDSADAISQLTLLSDKILPRCEHKQLILVFNKVELINETQKNELASQFS 355

Query: 335 ---YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
               +E     IS+      +EL  ++ +            I ++ RH   L++ +  + 
Sbjct: 356 EHIGSEIESIFISAKQRLHTDELQQRLVAAAHLPTVTQNDVIVTNVRHYEALTRALDAIH 415

Query: 392 MASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 + +   D +++++R     L  I G V  + +L  IF+ FCIGK
Sbjct: 416 RVQEGLDANISGDFLSQDIRECIFHLSDIAGEVTNDMVLQNIFAHFCIGK 465


>gi|15806039|ref|NP_294740.1| tRNA modification GTPase TrmE [Deinococcus radiodurans R1]
 gi|14195298|sp|Q9RVL1|MNME_DEIRA RecName: Full=tRNA modification GTPase mnmE
 gi|6458744|gb|AAF10590.1|AE001953_4 thiophene and furan oxidation protein [Deinococcus radiodurans R1]
          Length = 443

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/442 (31%), Positives = 235/442 (53%), Gaps = 16/442 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LDGRIL 61
           ++TI AV+T    + + I+R+SGP   ++ + + + K+        R+ FG    D  +L
Sbjct: 12  QDTIAAVATAPGSAGVGIVRVSGPRALEIADGLFRGKRRPSATPGGRFLFGELHADEELL 71

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+GL +VF  P S+TGED AE   HG  AV++ +L     +   RLA PGEF+ RA+  G
Sbjct: 72  DEGLCLVFRGPRSYTGEDVAEVQTHGSPAVLSRVLARTLDL-GARLARPGEFTLRAYLAG 130

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++  L+ + TE  RR S  G+SG LS         LT   + I+A LD+ E 
Sbjct: 131 RLDLTQAEAVLGLVEASTETARRQSALGLSGALSERVAGVARALTRTLAAIQALLDYPE- 189

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +    ++    +L  ++ +   ++    G I   G ++ ++G  NAGKSSL NAL  
Sbjct: 190 ---EGVPDEDRAAPLLGAQSALEELLASAHAGRISTRGARLALIGRPNAGKSSLLNALLG 246

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            + +IVT +PGTTRD L   L+L G  V + DTAG+RET+D++E  G+++      NADL
Sbjct: 247 YERSIVTPLPGTTRDYLEAGLELAGVPVTLVDTAGLRETEDLIEAAGVRQAVALAGNADL 306

Query: 302 ILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           +L+L++ +  +E      P     + + TK+DL + +T+     +S+ TG GL  L   I
Sbjct: 307 VLVLEDGSQPREPLPTELPPTATVLRLRTKADLPAAWTDPAALDVSAVTGAGLPALREAI 366

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
            + L     +    + + +R    + + + +++ A    +    D+    L  A  +L +
Sbjct: 367 GAALLGDATRGEAWLTT-ERQTDTVRRALTHVQAA----RTLPDDLAGYELEEALHALAE 421

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           +TG    E ++D +F  FC+GK
Sbjct: 422 LTGQDVQEDVVDAVFRNFCVGK 443


>gi|39939233|ref|NP_950999.1| tRNA modification GTPase TrmE [Onion yellows phytoplasma OY-M]
 gi|81402190|sp|Q6YPI0|MNME_ONYPE RecName: Full=tRNA modification GTPase mnmE
 gi|39722342|dbj|BAD04832.1| tRNA modification GTPase [Onion yellows phytoplasma OY-M]
          Length = 460

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 147/459 (32%), Positives = 236/459 (51%), Gaps = 24/459 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL---RYFFGLDGRIL 61
            +TI A+ST      +S+IR+SG +       I K K     K       +    +  IL
Sbjct: 3   FDTIAAISTPLGTGGVSVIRVSGNNSIAEINKIFKGKDLTKTKTHTITHGFILNKNQTIL 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ VF +P SFTGE+  E + HGGI +   +LE +  +  +RLA PGEFS+RA+ NG
Sbjct: 63  DEVLISVFKTPNSFTGENVVEINAHGGILITQMVLERVLSLD-IRLAFPGEFSQRAYLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL++AES+ DLI +  E   +++  G+    S L     D++ ++ + IE ++D+ E 
Sbjct: 122 KMDLIQAESIMDLIHATNENAIKIAHSGLQKYTSQLVTSLRDQILNLIAQIEVNIDYPEY 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +D+   + +++  ++  L   + + ++       ++ G K +I+G  N GKSSL NA   
Sbjct: 182 DDIPQITQQKIALEVKSLIKQLENILNHSHKNRYLKEGIKTLIVGRPNVGKSSLLNAFLN 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +  AIV+DI GTTRD +    + +G  + + DTAGIR+TDD +EK GI RT   +  A+L
Sbjct: 242 ETKAIVSDISGTTRDFVEAYFNCQGITLHLIDTAGIRKTDDPIEKIGILRTEKMLLQAEL 301

Query: 302 ILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYS------------TYTEEYDHLI 343
           ILL+ + N        + +   KN   I IG K+DL S                +    +
Sbjct: 302 ILLVLDQNNHLQEEDIQLLQLTKNHPRIIIGNKADLKSDKLISSLSNNSSQLAPQEIISV 361

Query: 344 SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVR-YLEMASLNEKDCG 401
           SS    G  EL   I K    N  +   F+  S+ RH+  +   +R + ++     +   
Sbjct: 362 SSLDKTGFLELQQTILKKFQLNDIQPKDFNYFSNARHINQIQIALRSFQDLQQALLQSMP 421

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +DI + +L  A  +LG+I G      L+  +FSKFC+GK
Sbjct: 422 IDIYSIDLTKAYQALGQIIGDNQENSLIKELFSKFCLGK 460


>gi|329894824|ref|ZP_08270624.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma
           proteobacterium IMCC3088]
 gi|328922718|gb|EGG30052.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma
           proteobacterium IMCC3088]
          Length = 460

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/457 (34%), Positives = 239/457 (52%), Gaps = 22/457 (4%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
            + +TI A++T      +  IR+SGP    + + +       PR A    F   DG ++D
Sbjct: 7   SDTDTICAIATPPGRGGVGGIRISGPRALAIAKQLSSITNIAPRTAHFSSFKTPDGELVD 66

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            GLL+ F +P SFTGED  E   HG   V+N +L E+  +   RLA PGEFS+RAF N K
Sbjct: 67  TGLLLFFATPRSFTGEDVVELQTHGSPIVLNRLLAEICGLGG-RLAEPGEFSKRAFLNNK 125

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE+++DLI++ TE   + +   + G  SS     + K+  +R  +EA +DF E E
Sbjct: 126 LDLVQAEAISDLINANTETAAKNAQNSLQGAFSSHVNGLLAKIIGLRVLVEAAIDFPE-E 184

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +V   S  +V   +  +  +    ++Q   G+II+ G  + ++G  NAGKSSL N L   
Sbjct: 185 EVDFISELDVQTQLNTIITETELTLNQANQGQIIQEGLTVALVGAPNAGKSSLLNQLCGL 244

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVTDIPGTTRD L   ++++G  V   DTAG+R TDD++E+ GI+R    +E A L+
Sbjct: 245 DKAIVTDIPGTTRDTLETVVNIKGVPVTFIDTAGLRLTDDVIEQAGIQRAVNTLERAQLV 304

Query: 303 LLLKEINSKKEIS------FPKN-------IDFIFIGTKSDLYSTYTEEY-----DHLIS 344
           L L + ++  E S       P N         FI +  K DL      +      +  I+
Sbjct: 305 LFLMDASATSEQSVSLFTLLPSNLAEACLAHPFIGVSNKIDLLDGPIPQIQEATTNVSIA 364

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-D 403
           +  G  +E L   I   +     +      + +RH+  L  T+  L+   +  ++    +
Sbjct: 365 AKMGLNIEGLKQAIIDAV-GLHPESEHLFSARQRHISALQSTLSALKNGFVQLQEHAASE 423

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+LRLA  ++  ITG    + LL  IFS FCIGK
Sbjct: 424 LLAEDLRLAQQAINSITGEFTNDDLLGEIFSSFCIGK 460


>gi|193213594|ref|YP_001999547.1| tRNA modification GTPase TrmE [Chlorobaculum parvum NCIB 8327]
 gi|193087071|gb|ACF12347.1| tRNA modification GTPase TrmE [Chlorobaculum parvum NCIB 8327]
          Length = 473

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 154/462 (33%), Positives = 244/462 (52%), Gaps = 30/462 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-----SLRYFFGLDGR-I 60
            I A++T     A++I+R+SG     + + + +K     + A     +  +    DG  +
Sbjct: 14  PIAAIATPVGVGALAIVRISGAGVLDLADRVFRKAHGSEKLADAAGYTAHFGRLYDGEEM 73

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ + +VF +P SFT E+  EF  HGG  VV  +L  L      RLA PGEF+RRAF N
Sbjct: 74  VDEVIALVFRAPRSFTAEEMVEFTCHGGPVVVGRVL-RLMLDKGCRLAEPGEFTRRAFLN 132

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDLL+AE++ ++I + TE   R ++  M G+LS+  G   ++L   R+ IE +LDFSE
Sbjct: 133 GRIDLLQAEAIGEMIHARTESAYRTAISQMKGDLSAQLGALREQLIRSRALIELELDFSE 192

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            EDV+  S  E+   +  L+ +++  I   + G ++  G   VI G  NAGKS+L N L 
Sbjct: 193 -EDVEFQSRDELTAQVETLRIEVNRLIDSYQHGRLVSEGVATVIAGKPNAGKSTLLNTLL 251

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV+ +PGTTRD +      +  + +++DTAG+RE  + +E EGI+R+ +++  AD
Sbjct: 252 GQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEAD 311

Query: 301 LILLLKEINSKK------EISFPK----NIDFIFIGTKS-------DLYSTYTEEYD--- 340
           LIL L ++ +++      EI   K       F+ +  K        DL    T+      
Sbjct: 312 LILYLLDLGTERLDDELTEIRELKAVHPEAKFLTVANKLDRADNSGDLIRAITDGTGTEV 371

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEK 398
             IS+  G+G+ +L   +  +     K    S+  +  RH   L      L+ A  L E 
Sbjct: 372 IGISALNGDGIAKLKQHMGELTKGLDKLHEASVLVTSLRHYEALRNASDALQNALELIEH 431

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               ++IA  LR A   +G+ITG V  E++L+ IF KFCIGK
Sbjct: 432 QSETELIAFELRAALDYVGEITGKVVNEEVLNTIFDKFCIGK 473


>gi|238917975|ref|YP_002931492.1| tRNA modification GTPase [Eubacterium eligens ATCC 27750]
 gi|238873335|gb|ACR73045.1| tRNA modification GTPase [Eubacterium eligens ATCC 27750]
          Length = 459

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/458 (33%), Positives = 238/458 (51%), Gaps = 24/458 (5%)

Query: 5   KETIFAVSTG-ALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGL---DG 58
           ++TI A+ST       ISI+R+SGP    + + + K KK        S    FG    +G
Sbjct: 4   EDTIAAISTSTVSSGGISIVRISGPDAIIIGDKVFKSKKNIKLANVQSHTVHFGNICDNG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+IV  SP ++T E+  E   HGGI V   +LE +      RLA PGEF++RAF
Sbjct: 64  NEIDEALVIVMKSPNTYTKENIVEIDCHGGILVTKKVLEAVL-NAGARLAEPGEFTKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I+++ +   + S+  + G+LS       + + +  +FIEA LD 
Sbjct: 123 LNGRIDLSQAEAVIDIINAKNDYALKSSVNQLDGKLSEKIKNIREIILNNVAFIEAALDD 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D+ + +   + ND+    N++ + +     G I+ +G + VILG +NAGKSSL N 
Sbjct: 183 PEHFDI-DANVNNLKNDVENCLNNVDNLLKTCDNGRIMHDGVRTVILGKTNAGKSSLLNV 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA+++ AIVTDI GTTRD L   ++L G  + + DTAGIR+TDD+VE  G+ +     E 
Sbjct: 242 LAREERAIVTDIEGTTRDTLEEMINLSGVTLNLIDTAGIRKTDDVVESIGVNKAKKLAEV 301

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--------IS 344
           ADL++ + +       N  + +   K+   + I  K+DL    T E            IS
Sbjct: 302 ADLVIYVVDSSRSLDDNDYEIMELIKDKKVLVILNKADLAQVTTAEDIKKIINCETVTIS 361

Query: 345 SFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GL 402
           +    G+EEL   +K++  N   K       +  RH   L +    L++      +    
Sbjct: 362 AKQETGIEELEETVKNMFFNGEVKFNEDVYITSTRHKELLKKAENSLKLVLDGIDNMVSE 421

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D +  +L  A  +LG I G    + L + IFSKFC+GK
Sbjct: 422 DFLTIDLMAAYENLGLIIGEEIEDDLANRIFSKFCMGK 459


>gi|301162191|emb|CBW21736.1| putative tRNA modification GTPase [Bacteroides fragilis 638R]
          Length = 465

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/470 (30%), Positives = 240/470 (51%), Gaps = 35/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-----KKKKPFPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP    +   I       K     +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGSIRVSGPEAITITGRIFTPAKSGKLLSEQKPYTLTFGRI 57

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            +G  ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE++
Sbjct: 58  YNGEEMIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL++  M G  S       +KL +  S IE 
Sbjct: 117 QRAFLNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELTTLREKLLNFTSMIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFSE EDV+      +      ++  I+   +   +G +I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSE-EDVEFADRSALRRLADEIEEVIARLANSFSVGNVIKNGVPVAIIGETNAGKST 235

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET D +E  GI+RTF 
Sbjct: 236 LLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQ 295

Query: 295 EVENADLILLLKE-INSKKEISFP--------KNIDFIFIGTKSDLYST----------- 334
           +++ A+++L + +  ++  +++          ++   I +  K +L +            
Sbjct: 296 KLDQAEIVLWMIDSADAISQLTLLSDKILPRCEHKQLILVFNKVELINETQKNELASQFS 355

Query: 335 ---YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
               +E     IS+      +EL  ++ +            I ++ RH   L++ +  + 
Sbjct: 356 EHIGSEIESIFISAKQRLHTDELQQRLVAAAHLPAVTQNDVIVTNVRHYEALTRALDAIH 415

Query: 392 MASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 + +   D +++++R     L  I G V  + +L  IF+ FCIGK
Sbjct: 416 RVQEGLDANISGDFLSQDIRECIFHLSDIAGEVTNDMVLQNIFAHFCIGK 465


>gi|195450224|ref|XP_002072419.1| GK22335 [Drosophila willistoni]
 gi|194168504|gb|EDW83405.1| GK22335 [Drosophila willistoni]
          Length = 507

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/482 (31%), Positives = 249/482 (51%), Gaps = 48/482 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----------PFPRKASLRYFF-G 55
           TI+++S+G +   +S+IRLSGP   Q    I               P PR+A L+ F+  
Sbjct: 26  TIYSLSSGHVKCGVSVIRLSGPRTKQALRAIIASGSKNTQNGFEFEPKPRQAYLKSFYHP 85

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           +   ++D+GLL+ FP P SFTGEDS EF VHG +AV+  +L+ L +   LR A PGEF++
Sbjct: 86  VSKEMIDRGLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGQCDGLRPAEPGEFTK 145

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF  GK+DL E E LADLI +ETE QR+ ++   +G L+ LY  W  +L    + +EA 
Sbjct: 146 RAFFGGKLDLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDSWRKRLIRCAAHLEAY 205

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF+EEE ++     ++  ++  +K +I  H++  + GE++R+G +  I+G  N GKSSL
Sbjct: 206 IDFAEEEQIEGGVILQLTRELNTVKAEIRDHLNDQRQGELLRDGVRTCIVGAPNVGKSSL 265

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFL 294
            N L ++ V+IVT   GTTRD++    +  GY V  +DTAG+ R+T D +E EG++R   
Sbjct: 266 LNMLCQRSVSIVTPQAGTTRDIIETMHNFGGYPVVFADTAGLRRQTSDAIELEGMQRAKQ 325

Query: 295 EVENADLILLLKEINSKK-----------------------EISFPKNIDFIFIGTKSDL 331
            +  +DLILL+ +                            ++          +  K+D 
Sbjct: 326 WINQSDLILLVADARELATLDSSQSKSLTNYIEKYLNDLDIQLDLYNGNVLKLVANKTDT 385

Query: 332 YSTYTEEYDHLISSF-TGEGLEELINKIKSI---------LSNKFKKLPFSIPSHKRHLY 381
            +T   +  H +S+  T   L+     ++                 +      +H R+  
Sbjct: 386 LTTDELKNLHKLSNILTISCLQPTNEALQRFLQALEQQLQQLCGTPRAEHPRITHMRYRQ 445

Query: 382 HLSQTVRYLEMASLN---EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
            L + + ++++   +   +    + I A+ LR +   + +ITG V  E +LD++F  FCI
Sbjct: 446 QLERCIEHIDIFLSDYKPDVYPDMAIAAQKLRQSVRCIERITGHVSCEDILDVVFKDFCI 505

Query: 439 GK 440
           GK
Sbjct: 506 GK 507


>gi|21674894|ref|NP_662959.1| tRNA modification GTPase TrmE [Chlorobium tepidum TLS]
 gi|25453304|sp|Q8KAS1|MNME_CHLTE RecName: Full=tRNA modification GTPase mnmE
 gi|21648119|gb|AAM73301.1| thiophene and furan oxidation protein ThdF [Chlorobium tepidum TLS]
          Length = 473

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/462 (33%), Positives = 242/462 (52%), Gaps = 30/462 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK---KKPFPRKASLRYFFG--LDGR-I 60
            I A++T     A++I+R+SG     + + + +K          A     FG   DG  +
Sbjct: 14  PIAAIATPVGVGALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDGEEM 73

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ + +VF +P SFT E   EF  HGG  VV  +L  L      RLA PGEF+RRAF N
Sbjct: 74  VDEVIALVFRAPRSFTAEQMVEFTCHGGPVVVGRVL-RLMLDNGCRLAEPGEFTRRAFLN 132

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDLL+AE++ ++I + TE   R ++  M G+LS   G   ++L    + IE +LDFSE
Sbjct: 133 GRIDLLQAEAIGEMIHARTESAYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSE 192

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            EDV+  S  E+   I  L+++++  I   + G I+  G   VI G  NAGKS+L N L 
Sbjct: 193 -EDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLL 251

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV+ +PGTTRD +      +  + +++DTAG+RE  + +E EGI+R+ +++  AD
Sbjct: 252 GQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEAD 311

Query: 301 LILLLKEINSKK------EISFPKNID----FIFIGTKSDLYSTY----------TEEYD 340
           LIL L ++ +++      EI   K       F+ +  K D  +            T    
Sbjct: 312 LILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTGTEV 371

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEK 398
             IS+  G+G++ L   +  ++ N  K    S+  +  RH   L      L+ A  L   
Sbjct: 372 IGISALNGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALELIAH 431

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +   ++IA  LR A   +G+ITG V  E++L+ IF KFCIGK
Sbjct: 432 ESETELIAFELRAALDYVGQITGKVVNEEVLNTIFDKFCIGK 473


>gi|195035994|ref|XP_001989456.1| GH18796 [Drosophila grimshawi]
 gi|193893652|gb|EDV92518.1| GH18796 [Drosophila grimshawi]
          Length = 495

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/469 (33%), Positives = 254/469 (54%), Gaps = 35/469 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGL-DGRILDK 63
           TI+++S+G +   +S+IR+SGP   Q    I       P  R+A L+ F+   +  I+D+
Sbjct: 27  TIYSLSSGHIKCGVSVIRVSGPQTKQALRAIVNNVDYEPKQRQAYLKSFYHPANKEIIDR 86

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGED+ EF VHG +AV+  +L+ L ++P LR A PGEF++RAF  GK+
Sbjct: 87  GLLLWFPGPASFTGEDACEFQVHGSLAVIAAMLDALGQLPGLRPAQPGEFTKRAFFGGKL 146

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L+ LY  W  +L    + +EA +DF+EEE 
Sbjct: 147 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRKRLIRCAAHLEAYIDFAEEEQ 206

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  +K +I  H++  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 207 IEGGVLLQLSRELNAVKREIRLHLNDQRQGELLRHGVRTVIIGAPNVGKSSLLNLLCQRA 266

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVENADLI 302
           V+IV +  GTTRD++    +  GY V  +DTAG+ R+T D +E EG+ R    +  +DL+
Sbjct: 267 VSIVAEKAGTTRDIIETTHNFGGYPVVFADTAGLRRDTTDTIEVEGMARAKQCLAQSDLV 326

Query: 303 LLLKEINSKKEISFPK---------------------NIDFIFIGTKSD-LYSTYTEEYD 340
           LLL +  S +++   K                           +  K+D L +  T+   
Sbjct: 327 LLLADARSLRDVDNNKALAGYIESYLQELDIPAELCHGKRLQLVANKTDTLSAEETQRIG 386

Query: 341 HLI----SSFTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMAS 394
            L     S    + L E +  ++ +L       +      +H R+   L + + +++   
Sbjct: 387 KLNMLALSCHKQDNLAEFLGALEQLLQQLCGTPQAEHPRITHMRYRQQLERCIEHIDTFQ 446

Query: 395 LN---EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   +    + I A+ LR +   + +ITG V  E +LD++F  FCIGK
Sbjct: 447 RDYKPDVYPDMAIAAQQLRKSVRCIERITGHVSCEDILDVVFKDFCIGK 495


>gi|161833721|ref|YP_001597917.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri GWSS]
 gi|293977831|ref|YP_003543261.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri DMIN]
 gi|205415809|sp|A8Z5X0|MNME_SULMW RecName: Full=tRNA modification GTPase mnmE
 gi|152206211|gb|ABS30521.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri GWSS]
 gi|292667762|gb|ADE35397.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri DMIN]
          Length = 454

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 150/457 (32%), Positives = 238/457 (52%), Gaps = 20/457 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFGLD 57
           M    +TI A++T +   AI++IR+SG +  ++ + I     K +       L Y     
Sbjct: 1   MLKNDDTIVAIATPSGYGAIAVIRISGNNSIKIIKKIFCSFSKNQIETNYIHLGYIK-YK 59

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +I+DK L+ +F  P+S+TGED  E   HG I + N +L  +      RLANPGEF+ RA
Sbjct: 60  KQIIDKVLIFLFKKPKSYTGEDIVEISCHGSIYIQNKLLSIII-DQGARLANPGEFTLRA 118

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGKIDL +AES+ D+++SET    + ++  M G +S L  +   ++ ++ S IE +LD
Sbjct: 119 FLNGKIDLCQAESILDIVNSETFFSHKFAINQMRGNISLLIRKLSKEIINLLSLIEFELD 178

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE E+    +  E    +  +   + + I   K+G  ++NG  + I+G  N GKS+LFN
Sbjct: 179 FSE-ENCNFINYLEFKKMLYNIIKKLKTLIRSFKIGNALKNGISVSIIGCPNVGKSTLFN 237

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEV 296
            L K + +IV++I GTTR+ +   L + G   +  DTAGI   T D +EK GIK+T+ ++
Sbjct: 238 KLLKYERSIVSNIAGTTRNYIEDSLIINGIKFRFIDTAGINNNTKDYIEKLGIKKTYSKI 297

Query: 297 ENADLILLLKEINSKKEI-----SFPKNIDFIFIGTKS---DLYSTYTEEYDHL----IS 344
             +DLIL + +  ++K I     S  +      I       DL     +E+++     IS
Sbjct: 298 NKSDLILYVFDDLNEKFILKKVKSLQEKYPKKKIFIIINKYDLIKKKIKEFNYKKIFKIS 357

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLEMASLNEKDCGLD 403
           +  G G+  L+++I             +I   + RH     + + YL     N      +
Sbjct: 358 AKYGYGVNNLLSEITFFSKKITSLKENTIVITQTRHYESFKKAIFYLYKVKKNLYSISPE 417

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++ ++R A   LGK+TG V  E +L  IFSKFCIGK
Sbjct: 418 FLSIDIRTALDYLGKVTGEVTNEDILSNIFSKFCIGK 454


>gi|53712463|ref|YP_098455.1| tRNA modification GTPase TrmE [Bacteroides fragilis YCH46]
 gi|81825067|sp|Q64X55|MNME_BACFR RecName: Full=tRNA modification GTPase mnmE
 gi|52215328|dbj|BAD47921.1| putative ThdF family GTPase [Bacteroides fragilis YCH46]
          Length = 465

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/470 (30%), Positives = 240/470 (51%), Gaps = 35/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-----KKKKPFPRKASLRYFFG 55
           MN  ++TI A++T     AI  IR+SGP    +   I       K     +  +L +   
Sbjct: 1   MN--QDTICAIATAQG-GAIGSIRVSGPEAITITGRIFTPAKSGKLLSEQKPYTLTFGRI 57

Query: 56  LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            +G  ++D+ L+ +F +P S+TGEDS E   HG   ++  +++ L K    R+A PGE++
Sbjct: 58  YNGEEMIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYT 116

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLI+S +    RL++  M G  S       +KL +  S IE 
Sbjct: 117 QRAFLNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELTTLREKLLNFTSMIEL 176

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFSE EDV+      +      ++  I+   +   +G +I+NG  + I+G +NAGKS+
Sbjct: 177 ELDFSE-EDVEFADRSALRRLADEIEEVIARLANSFSVGNVIKNGVPVAIIGETNAGKST 235

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  +D AIV+DI GTTRDV+   +++ G   +  DTAGIRET D +E  GI+RTF 
Sbjct: 236 LLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQ 295

Query: 295 EVENADLILLLKE-INSKKEISFP--------KNIDFIFIGTKSDLYST----------- 334
           +++ A+++L + +  ++  +++          ++   I +  K +L +            
Sbjct: 296 KLDQAEIVLWMIDSADAISQLTLLSDKILPRCEHKQLILVFNKVELINETQKNELASQFS 355

Query: 335 ---YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
               +E     IS+      +EL  ++ +            I ++ RH   L++ +  + 
Sbjct: 356 EHIGSEIESIFISAKQRLHTDELQQRLVAAAHLPTVTQNDVIVTNIRHYEALTRALDAIH 415

Query: 392 MASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 + +   D +++++R     L  I G V  + +L  IF+ FCIGK
Sbjct: 416 RVQEGLDANISGDFLSQDIRECIFHLSDIAGEVTNDMVLQNIFAHFCIGK 465


>gi|297618522|ref|YP_003703681.1| tRNA modification GTPase TrmE [Syntrophothermus lipocalidus DSM
           12680]
 gi|297146359|gb|ADI03116.1| tRNA modification GTPase TrmE [Syntrophothermus lipocalidus DSM
           12680]
          Length = 460

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/461 (29%), Positives = 231/461 (50%), Gaps = 28/461 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-------SLRYFFGLD 57
           ++TI A++T      I+I+R+SG     + E + +      R          L +     
Sbjct: 3   EDTIAAIATPLGEGGIAIVRVSGREAVDIVEKVFRPVPGGKRLKDRGGYTLGLGWIVDRK 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  +D+ L+ V   P+S+T ED  E + HGG+      LE + +    RLA PGEF++RA
Sbjct: 63  GNHVDEVLVTVMRGPKSYTAEDVVEINCHGGVLAAIRCLETVLE-NGARLAEPGEFTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++D+ +AE++ D+I ++TE    ++++ + G L     +  D+L  + + +EA +D
Sbjct: 122 FLNGRLDISQAEAVIDIIRAKTEKGMSMAVKQLEGMLRKRVAELEDRLVGLNTMVEASID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E  +V +   +        +  ++   +  G+   + + G K+VI G  N GKSSL N
Sbjct: 182 FPE--EVGDLDEEIARQQAQEILRELEGLLRAGERNRVYQWGVKVVIAGKPNVGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL +K  AIVTDIPGTTRD++   ++++G  V I DTAGIRET D+VE+ G++R+   + 
Sbjct: 240 ALLRKKKAIVTDIPGTTRDIVEDYINVKGIPVNIMDTAGIRETGDLVERIGVERSEEVIS 299

Query: 298 NADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYST----------YTEEYDH 341
            AD+IL + +  +      ++          I +  K DL             +  +   
Sbjct: 300 EADIILAVLDAGAGISEEDERVAKMVAGRRVIVLVNKEDLEEKRVTLEEVERLFPGQTVV 359

Query: 342 LISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKD 399
             S     GLEEL + I+  +L+ K +     I  + R      +    +E   +  E +
Sbjct: 360 RGSVKEEIGLEELESAIEEAVLAGKVEAGDEDIMVNLRQEEAFRRVKTSMEGFLAGLETN 419

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LD +A ++  A  +LG+ITG    E +++ IF  +CIGK
Sbjct: 420 TSLDCLAVDIGEALEALGEITGKTLKEDVIERIFRDYCIGK 460


>gi|291532561|emb|CBL05674.1| tRNA modification GTPase trmE [Megamonas hypermegale ART12/1]
          Length = 465

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/474 (32%), Positives = 230/474 (48%), Gaps = 51/474 (10%)

Query: 4   EKETIFAVSTGAL------------PSAISIIRLSGPSCFQVCEFICKKKKP-------F 44
           E +TI A+ST                S I            V   + K  K         
Sbjct: 6   ENDTIVAISTPPGEGGIGIIRISGENSGI------------VASKLFKCAKKDLTVGNFE 53

Query: 45  PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN 104
             K          G ++D+ L I   +P S+T E+  E   HGG  VV  ILE LA    
Sbjct: 54  SHKVVYGKIVDEKGNVIDEALCIAMWAPNSYTKENVVEIQSHGGALVVRRILE-LALQNG 112

Query: 105 LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK 164
            R+A PGEF++RAF NG++DL +A+S+ D+I + T+   R++   + G+ S         
Sbjct: 113 ARMAEPGEFTKRAFLNGRLDLSQAQSVMDIIKARTDASLRMAAGHLQGKFSDEIKAMRHD 172

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           +  + + +EA +DF E +D+++ +  E    +  +KN I   +S    G I+R+G    I
Sbjct: 173 ILEVIAHLEASIDFPE-DDIEDVAKDEASAKVRSIKNRIEEMLSTFNTGRILRDGLVTAI 231

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKSSL N L ++D AIVTDIPGTTRD L    ++ G  +KI DTAGIRET+D V
Sbjct: 232 IGKPNVGKSSLLNTLLREDRAIVTDIPGTTRDSLEEYANIGGVPLKIIDTAGIRETEDKV 291

Query: 285 EKEGIKRTFLEVENADLILLLKEINS---------------KKEISFPKNIDFIFIGTKS 329
           E+ G++++   V+ ADLIL L + +S               K+ I      D   +    
Sbjct: 292 EQIGVEKSMSYVQKADLILALFDTSSDLTKEDEEIINLLQGKEGIVLLTKNDLSCVLDIE 351

Query: 330 DLYSTYTEEYDHLISS-FTGEGLEELINKIKSILSNKF-KKLPFSIPSHKRHLYHLSQTV 387
           DL       + ++  S F  +G++EL  +I + + +   K+      ++ R    L +  
Sbjct: 352 DLQKRLQGNFKYMQISTFNNDGIKELEQEIVNRVYSGTVKQTEGVFVNNVRQANALKEAQ 411

Query: 388 RYLEM-ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +YLE   +  E D   D I  ++R A   LG+ITG    E ++D IFS+FCIGK
Sbjct: 412 KYLEDCLNTIEMDMAEDFIVIDIRSAWEKLGEITGDTVDEDIIDQIFSQFCIGK 465


>gi|76811890|ref|YP_331723.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710b]
 gi|254186626|ref|ZP_04893143.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pasteur
           52237]
 gi|254261025|ref|ZP_04952079.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710a]
 gi|123600728|sp|Q3JXI0|MNME_BURP1 RecName: Full=tRNA modification GTPase mnmE
 gi|76581343|gb|ABA50818.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710b]
 gi|157934311|gb|EDO89981.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pasteur
           52237]
 gi|254219714|gb|EET09098.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710a]
          Length = 467

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/469 (32%), Positives = 241/469 (51%), Gaps = 32/469 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFG 55
           +  + + I A++T +    I ++RLS       +   + + +C  +   PR AS   F  
Sbjct: 2   LATDSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGARL-MPRHASYVPFLD 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGE 112
             G  LD+G+ + FP+P S+TGE   E   HGG  V+  +L+      +   LRLA PGE
Sbjct: 61  GAGEPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEPGE 120

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF N K+DL +AE++ADLI + +E   R +   + G  S      +D +  +R  +
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASSEAAARSAGRSLDGAFSRDIHALVDDVIALRMLV 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF E E++    + +    +  ++  ++  +   + G ++R G  +V+ G  N GK
Sbjct: 181 EATLDFPE-EEIDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGK 239

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+RET+D VEK GI RT
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAGLRETEDEVEKIGIART 299

Query: 293 FLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLY------------S 333
           + E+E AD++L L +        +      FP  +  + +  K+DL             +
Sbjct: 300 WGEIERADVVLHLLDARSGLGPGDEAIAARFPDGVPVVRVLNKTDLTGAPASVTRTGGGA 359

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +  +  +S+  G+G++ L  ++  I   +         + +RHL  L     +L  A
Sbjct: 360 ARADVCEVRLSAKRGDGIDLLRGELLRIAGWQAG-AESVYLARERHLIALRAAQAHLARA 418

Query: 394 SLNEKD--CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + + +     LD+ AE LRLA   L  ITG    + LL +IFS+FCIGK
Sbjct: 419 AEHAEQNAQALDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFCIGK 467


>gi|52627366|gb|AAU84697.1| tRNA modification GTPase TrmE [Prevotella intermedia]
          Length = 467

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 131/463 (28%), Positives = 233/463 (50%), Gaps = 25/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDG 58
           + +  ETI A++T     AI +IR+SG    ++ + I  +        +L Y      D 
Sbjct: 7   LLNSSETICALATQPG-GAIGVIRVSGSKAIEIVDSIFSRPILNAPANTLHYGEILDKDH 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D+ ++ ++ +P S+TGEDS E   HG   ++  +L  L +    R A PGE+++RA+
Sbjct: 66  QTIDEVVVSIWRAPHSYTGEDSVEISCHGSAYILEQVLHRLIESN-CRQAKPGEYTQRAY 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL + E++ADLI+S  +   +L++  + G  SS      ++L  I S +E +LDF
Sbjct: 125 LNGKMDLSQTEAVADLIASTNKASYKLALSQLKGHFSSELSTLRNQLLKINSLLELELDF 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+ E+++     E++     +   +++     K G+ ++NG  + I+G +N GKS+L N 
Sbjct: 185 SDHEELEFADRTELIALSEEIDRKVTTLARSFKTGQALKNGIPVAIIGKTNVGKSTLLNR 244

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L + + AIV++I GTTRD++   + + G      DTAGIR+T D VE+ GI+RT   +E 
Sbjct: 245 LLRDNRAIVSNIHGTTRDIIEDTISINGVDFHFIDTAGIRKTTDYVEQLGIERTLATLEK 304

Query: 299 ADLILLLKE-----INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-----------L 342
           A ++L + +        K+ ++   +   I +  K D  +  T + +H            
Sbjct: 305 AQIVLWVVDNEPTESEKKEILAQCTDKHLILVHNKVDDLTEPTNQQNHAATSHDSTYTYH 364

Query: 343 ISSFTGE---GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
             + +G+   G+ +L   I  +          +I ++ RH   L++    L         
Sbjct: 365 EIAISGKYNLGINQLEALIYKVADLPEITENTTIITNARHYDALTRAHASLLRVQEAMAM 424

Query: 399 DCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
               D+I+E+L+     L +ITG  +  ++ L  IF  FCIGK
Sbjct: 425 SLSGDLISEDLKDTISILAEITGDQITPQETLHNIFKHFCIGK 467


>gi|118594209|ref|ZP_01551556.1| tRNA modification GTPase [Methylophilales bacterium HTCC2181]
 gi|118439987|gb|EAV46614.1| tRNA modification GTPase [Methylophilales bacterium HTCC2181]
          Length = 450

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 155/455 (34%), Positives = 248/455 (54%), Gaps = 20/455 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M     TI A+ST      I I+RLSGP    + + IC  +   PR+A    F+  D  I
Sbjct: 1   MLRAANTIAAISTAGGVGGIGIVRLSGPEALAIAKTICSGQ-IVPREAGFHNFYNADQEI 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+++ FP+P+SFTGED  EF  HGG  V+N +L  L      RLA PGEF+RRA+ N
Sbjct: 60  VDQGVILFFPNPKSFTGEDVIEFQGHGGQTVLNAVLN-LCIDKGARLAEPGEFTRRAYLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ D+I++ T    + + + +SG+ S      + KL  +R F+EA LDF E
Sbjct: 119 NKMDLAQAESVIDVINATTIEAVKSAAQSLSGKFSIKINGLLKKLIELRVFVEACLDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++       V++ +  +  ++   +   + G++++ G  +V++G  N GKSSL N L 
Sbjct: 179 -EEIDFIEQGNVIDRLNNIAAEVDQILLVARHGQLLKEGANVVLIGQPNVGKSSLLNQLV 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTD+PGTTRD +  ++ + G  + + DTAG+R TDD VE  GI +T+  ++ + 
Sbjct: 238 GEEKAIVTDVPGTTRDPIASNISIHGIPLNVFDTAGLRTTDDQVELLGISKTWESIKGSH 297

Query: 301 LILLLKEI-----NSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347
           + ++L +      N +K+I    PKNI+ ++I  K DL     +  +H       IS+  
Sbjct: 298 IAMVLVDATKGAGNYEKDIISRLPKNIEILWIYNKIDLTDDKPKAVEHNQNKSIYISAKL 357

Query: 348 GEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
             G++ L   +  IL+    +        +  RH+  L+     + M   ++     +++
Sbjct: 358 DLGIDLLREALYEILTGGSAYNNNETVYIARSRHIDALNAVKASIIMGLAHKDSS--ELL 415

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           AE L LA  +L  ITG    + LL  IFS+FCIGK
Sbjct: 416 AEELMLAQNALSSITGEFSSDDLLGKIFSEFCIGK 450


>gi|296114339|ref|ZP_06832993.1| tRNA modification GTPase TrmE [Gluconacetobacter hansenii ATCC
           23769]
 gi|295979100|gb|EFG85824.1| tRNA modification GTPase TrmE [Gluconacetobacter hansenii ATCC
           23769]
          Length = 431

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 162/438 (36%), Positives = 246/438 (56%), Gaps = 16/438 (3%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-----GRILD 62
           IFA++TGA  +AI+++R+SG  C  +   +C    P PR+ASLR  +  D     G +LD
Sbjct: 5   IFALATGAGRAAIAVMRISGAGCDAILRSLCGG-LPEPRRASLRGIWRRDADAGPGVLLD 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + +++ FP P S+TGEDSAE H+H G AV+ G+ + L  +   R A PGEF+RRAF  G+
Sbjct: 64  RAVVLWFPGPNSYTGEDSAELHLHAGPAVIAGVADALVAL-GARPAEPGEFTRRAFAGGR 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE +ADLI +ETE QRR ++    G  S LY  W  +L    +  EA +DF + E
Sbjct: 123 LDLVQAEGIADLIDAETEAQRRQALAQADGAQSRLYEDWAARLRTALAHQEALIDFPD-E 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+       +L  +  L++++ +++  G  GE +R G    I+G  N GKSSL N LA++
Sbjct: 182 DLPPEVEDALLGTLAQLRDEMQAYLDDGSQGERLRRGLVFTIVGEPNVGKSSLLNTLAQR 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIV+   GTTRD + + + L    V + DTAG+RETDD +E EG++R    V+ AD +
Sbjct: 242 DAAIVSSRAGTTRDAIEVRIVLGDVPVIVVDTAGLRETDDEIEAEGVRRALFHVKQADCV 301

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           + +    S   +      D I +  + D            IS  TGEG+E L + +    
Sbjct: 302 IHVF---SGAAVPDKVGPDSIMVCNRID--EVAAPPGIMGISVRTGEGMEALRDVLAQRA 356

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
            +  +    +  +  RH   + +T  +L  A+    D   ++  E +RLA  +LG++TG 
Sbjct: 357 RDLTQGRAAAPLTRARHRAAIEETAHHLNRAA---DDAWPEVRGEEMRLAMRALGRLTGA 413

Query: 423 VDVEQLLDIIFSKFCIGK 440
           V VE LLD +F +FCIGK
Sbjct: 414 VGVEALLDTVFGQFCIGK 431


>gi|254504318|ref|ZP_05116469.1| putative GTPase [Labrenzia alexandrii DFL-11]
 gi|222440389|gb|EEE47068.1| putative GTPase [Labrenzia alexandrii DFL-11]
          Length = 405

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 166/399 (41%), Positives = 240/399 (60%), Gaps = 14/399 (3%)

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                I+D+ L++ F  P SFTGED  EF  HGG AVV  +L  L + PN R A PGEF+
Sbjct: 8   PASQEIIDQALVLFFEGPASFTGEDVVEFQCHGGRAVVAAMLRILGEFPNCRPAEPGEFT 67

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAF+ G++DL E E LADLI++ETE QR+ ++  M G L SLY  W  +L H+R+ IEA
Sbjct: 68  RRAFDRGRMDLTEVEGLADLIAAETESQRKQAVRQMGGALGSLYEDWRKRLIHMRAMIEA 127

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           D DF++EEDV    + EV  +   L+++++ H+ Q + GE +R+G ++V++G  NAGKSS
Sbjct: 128 DFDFADEEDVPGSVADEVWKEAATLQSEVTRHLEQSRSGERLRSGLQVVLMGAPNAGKSS 187

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NA+A +DVAIVT+  GTTRDV+ + LDL GY V + DTAG+RETD IVE+EGI+R   
Sbjct: 188 LLNAIAGRDVAIVTEEAGTTRDVIEVHLDLGGYPVTLVDTAGLRETDGIVEREGIRRAEE 247

Query: 295 EVENADLILLLKEIN----SKKEISFPKN----IDFIFIGTKSDLYSTYTEEYD-----H 341
               ADL+L   E         +   P++    +    + TK+DL +   ++        
Sbjct: 248 RGRQADLVLWAVEPGGVEPDHPQAGLPEDVADRVPVWTVRTKADLETLPEQDSSGITEKI 307

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
             SS + EG++ L + +              + +  RH ++L+  +  L  A  ++    
Sbjct: 308 PASSKSDEGMKGLFDALTRFAEETISVGEAPLATRARHRHYLNDCLSGLGQAVSSDH-LP 366

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++ AE+LR A+ SLG+ITG +DVE LLD+IF  FCIGK
Sbjct: 367 TELRAEDLRRAADSLGRITGRIDVEDLLDVIFRDFCIGK 405


>gi|86136756|ref|ZP_01055334.1| tRNA modification GTPase [Roseobacter sp. MED193]
 gi|85826080|gb|EAQ46277.1| tRNA modification GTPase [Roseobacter sp. MED193]
          Length = 428

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/437 (38%), Positives = 248/437 (56%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    + +S+IR+SGP+   V   IC +  P  +   LR     DG  LD+ L
Sbjct: 2   DTIFALASAQGKAGVSVIRISGPNALGVANQICDRPLP-AKGRGLRRLIDFDGSQLDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +P SFTGE+  EF VHG  AVV+ +L+ L + P+LRLA PGEF+RRA ENGK+DL
Sbjct: 61  VLSFAAPASFTGENIVEFQVHGSTAVVSAVLDRLTRTPDLRLAEPGEFTRRALENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E+LADLI +ETE QR+ +   +SG L  L  +W   L    S IE  +DF++ EDV 
Sbjct: 121 AQVEALADLIDAETEAQRKQAQVVLSGGLGQLAERWRVDLIRAASLIEVTIDFAD-EDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV   +  +  D+ +     K+ E IR+G+++ I+G  N GKS+L N LA ++ A
Sbjct: 180 VDVTPEVTTLLNSVAQDLEAETKGVKIAERIRDGFEVAIIGAPNVGKSTLLNMLAGREAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRDV+ + +DL G  V + DTAG+R+TDD VE  GI+      E ADL + L
Sbjct: 240 ITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRDTDDHVEGIGIELARKRAEQADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E +  + I        I +  K+D      E  D  IS  TG+G++ L+  I   L ++
Sbjct: 300 VEPD--EAIDLEMRPGDIRLRPKAD----MREISDGSISGKTGQGVDRLVTHISDTLKDR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCV 423
             ++   + +  RH   +   +  L  A L  +      +I AE++R A  SL  + G V
Sbjct: 354 STQV--GVATRARHRDMMLAALNSLSEAQLVLQRGAEFYEIAAEDIRSAVRSLEMLVGRV 411

Query: 424 DVEQLLDIIFSKFCIGK 440
            VE LLD IFS FC+GK
Sbjct: 412 GVENLLDEIFSSFCLGK 428


>gi|159045994|ref|YP_001534788.1| tRNA modification GTPase TrmE [Dinoroseobacter shibae DFL 12]
 gi|205829136|sp|A8LPC2|MNME_DINSH RecName: Full=tRNA modification GTPase mnmE
 gi|157913754|gb|ABV95187.1| tRNA modification GTPase TrmE [Dinoroseobacter shibae DFL 12]
          Length = 429

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 161/437 (36%), Positives = 248/437 (56%), Gaps = 11/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    S ++++R+SG   F     +     P  ++ SLR     DG ++D+ L
Sbjct: 2   DTIFALASAPGKSGVAVLRISGSRAFHAGRVLAGG-LPDAQRTSLRKLRDSDGSVIDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F SP SFTGED  EF  HG  A++  ++ EL+ +P LRLA PGEF+RRA EN ++DL
Sbjct: 61  VLAFESPNSFTGEDCVEFQTHGSPAIIAALMNELSALPGLRLAQPGEFTRRALENNRMDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ ++   SGEL      W   L    + +E  +DF++ E+V 
Sbjct: 121 AQVEGLADLIEAETEAQRKQALRTFSGELGQKVELWRKDLVRAMALLEVTIDFAD-EEVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                EV   +  +  ++++  +     E IR+G+++ ILG  N GKSSL N LA ++ A
Sbjct: 180 EDVYPEVQELLGRVSQNLAAESAGTHAAERIRHGFEVAILGAPNVGKSSLLNRLAGREAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL-ILL 304
           I + I GTTRDV+ + LDL+G  V + DTAG+RET D +E+ GI R     E+ADL I+L
Sbjct: 240 ITSSIAGTTRDVVEVRLDLDGLPVTVLDTAGLRETQDEIEQIGISRAMARAESADLRIIL 299

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           +++      +      D I +  KSD+  + +E     ISS TG G++ L+  +   L  
Sbjct: 300 IEDGRLPSGLGVAD--DDILVQAKSDILPSSSE---FAISSVTGRGIDRLVKAVSHRL-- 352

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENLRLASVSLGKITGCV 423
             +       +H RH   +S  V  L++A     +   ++++ E+LR A V L  + G V
Sbjct: 353 SLRAASAGTATHVRHRLAISSAVESLDLAKTKISEGFPVELVIEDLRQALVDLESLIGRV 412

Query: 424 DVEQLLDIIFSKFCIGK 440
            VEQ+LD IF+ FC+GK
Sbjct: 413 GVEQVLDEIFANFCLGK 429


>gi|260431964|ref|ZP_05785935.1| tRNA modification GTPase TrmE [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415792|gb|EEX09051.1| tRNA modification GTPase TrmE [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 428

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 176/437 (40%), Positives = 246/437 (56%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    + +++IRLSGP   +    +     P  R   +R F   DG  LD GL
Sbjct: 2   DTIFALASAQGKAGVAVIRLSGPLAHRAAAELSGGDLP-ARGMRVREFRAPDGSRLDDGL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F  P SFTGED AE  +HG  A VN +L  LA M  LR+A PGEF+RRA ENGK+DL
Sbjct: 61  VLTFQGPASFTGEDVAELQIHGSTAAVNAVLRTLADMDGLRIAEPGEFTRRALENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ +   ++GEL  L  +W   L    S +EA +DF++ E+V 
Sbjct: 121 AQVEGLADLIDAETEAQRKQAQTILAGELGDLAERWRRDLIRAASLLEAVIDFAD-EEVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV   I  +  D+       K+ E IRNG+++ I+G  NAGKS+L NALA ++ A
Sbjct: 180 TDVTPEVRQLIAGVMTDLDRESRGVKIAERIRNGFEVAIVGPPNAGKSTLLNALAGREAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRDV+ + +DL G  V + DTAG+RET D VE  GI       E ADL + L
Sbjct: 240 ITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETGDHVENLGIALARERAEKADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E   +  ISF      I +  KSDL +      +  +S  TG+G++ LIN+I  +L  +
Sbjct: 300 TEDPDQLGISFQPGD--IHVLPKSDLRAAS----ETGVSGKTGQGIDRLINQISRVLMER 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL-DIIAENLRLASVSLGKITGCV 423
                  I + +RH   + +    L +   + E    L DI AE LR A  +L  + G V
Sbjct: 354 --TASSGIATRERHRSAMQRASAALTDSLKVLESGPDLYDIAAEELRTAIRALESLVGRV 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LLD IF+ FC+GK
Sbjct: 412 DVENLLDEIFASFCLGK 428


>gi|16330488|ref|NP_441216.1| tRNA modification GTPase TrmE [Synechocystis sp. PCC 6803]
 gi|2495120|sp|P73839|MNME_SYNY3 RecName: Full=tRNA modification GTPase mnmE
 gi|1652979|dbj|BAA17896.1| thiophen and furan oxidation protein [Synechocystis sp. PCC 6803]
          Length = 456

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 234/457 (51%), Gaps = 25/457 (5%)

Query: 5   KETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
           ++TI A++T       +I ++RLSGP    + + +         + S R  +G       
Sbjct: 4   EDTIAAIATAIVPQQGSIGVVRLSGPQSLTIAKTLFDAPGNQTWE-SHRILYGHVRHPQT 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ LL++  +P S+T ED  EF  HGGI  V  +  +L      RLA PGEFS RA
Sbjct: 63  KAAIDEALLLLMLAPRSYTKEDVVEFQCHGGIMPVQQV-LQLCLQQGARLAQPGEFSFRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AES+++L+ +++     +++ G+ G+L+       +    I + +EA +D
Sbjct: 122 FLNGRLDLTQAESISELVGAQSPQAAAIALAGLQGKLAQPIRDLRNTCLDILAEVEARID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F +  D+       +   +  L   +   ++  + GE++R G K+ I+G  N GKSSL N
Sbjct: 182 FED--DLPPLDEDSIRQQLQNLYQQLEDILNTAQRGELLRTGLKVAIVGQPNVGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           A ++ D AIVTD+PGTTRDV+   L +EG  +++ DTAGIRET D VE+ G++R+    +
Sbjct: 240 AWSRTDRAIVTDLPGTTRDVVESQLVVEGIPIQVLDTAGIRETADQVEQIGVERSRKAAQ 299

Query: 298 NADLILLLKEI-----NSKKEI-SFPKNIDFIFIGTKSDLYST----YTEEYDHL--ISS 345
            ADL+LL  +       + + I    K+   I +  K DL       Y  E  +    ++
Sbjct: 300 QADLVLLTVDAHQGWTEADQLIYEQVKDRPLILVINKIDLGRADLVSYPPEITNTVLTAA 359

Query: 346 FTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLD 403
               G+E L N  I+ +              ++R    L++    L ++     +   LD
Sbjct: 360 AANLGIEALENAIIEQVNQTNLSPQNLDFAINQRQEAVLTEAQLALKQLQQTMAEQLPLD 419

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +LRLA  +LG++TG    E +LD IFS+FCIGK
Sbjct: 420 FWTIDLRLAINALGQVTGETVTESVLDRIFSRFCIGK 456


>gi|167519733|ref|XP_001744206.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777292|gb|EDQ90909.1| predicted protein [Monosiga brevicollis MX1]
          Length = 477

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 155/468 (33%), Positives = 255/468 (54%), Gaps = 37/468 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGL-DGRILDKG 64
           T++A+S+    + ++++R+SGP       + + K+  P PR+A++          +LD+ 
Sbjct: 13  TVYALSSAPGKAGVAVVRISGPEALAAAGQLLGKRALPIPRQATVARLSDPLTDDLLDQA 72

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGED  E H+HG  AVV G+L+ L ++  L  A PGEF++RAF +GK+ 
Sbjct: 73  LVLTFPGPRSFTGEDVVELHLHGSRAVVAGVLDALGRLQGLAPAPPGEFTKRAFAHGKLG 132

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L + E LADLIS+ET  QR+ ++  + G+   L   W  +L H  + +EA +DFSE+E++
Sbjct: 133 LTQVEGLADLISAETTSQRQQALRHLEGDAQKLLLGWRQELLHALALLEAYIDFSEDENI 192

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +       +  +  ++  H++  + G+ +R+G +IV+ G  N GKSSL N   +++ 
Sbjct: 193 EEDAFSSASEKVGHMVEEMRRHVADSRAGQRVRDGVRIVLSGLPNVGKSSLLNYFCRQER 252

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTFLEVENADLI 302
           AIVTDIPGTTRD+LT+DL+L G+ V   DTAGIR  D  D VE+EG++R      NAD+ 
Sbjct: 253 AIVTDIPGTTRDLLTVDLELRGFPVIFVDTAGIRFGDQVDRVEQEGVRRAQEAAANADVR 312

Query: 303 LLLKEINSKKEI----------------------SFPKNIDFIFIGTKSDLYSTYTE--E 338
           + L++  + + +                              + +  K D      E  E
Sbjct: 313 ICLQDATNPESLCCSTLKQGGVPCACLHGSAINADQSTPPHLLRVVNKCDAKPLSMELSE 372

Query: 339 YDHLISSFTGEGLEELI----NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
               +S    + L++L     + ++++      ++P  +    RH  HL+  +  LE A 
Sbjct: 373 GVLSVSCLERKNLDQLTTVLGDTVETLCHTASGEVPTVV--RHRHQQHLTAALEALEQA- 429

Query: 395 LNEKDCGLD--IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L       D  ++AE +R A   LG +TG V ++++LDI+FS+FCIGK
Sbjct: 430 LVSSALSADCVLMAEEMRYALSELGHLTGHVKLDEMLDIVFSEFCIGK 477


>gi|219670950|ref|YP_002461385.1| tRNA modification GTPase TrmE [Desulfitobacterium hafniense DCB-2]
 gi|219541210|gb|ACL22949.1| tRNA modification GTPase TrmE [Desulfitobacterium hafniense DCB-2]
          Length = 459

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 154/460 (33%), Positives = 241/460 (52%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRYFFGLDG-R 59
            +TI A++T     +I ++RLSGP   ++ E       P   +     +L   +   G +
Sbjct: 2   DDTIIALATAVGEGSIHVLRLSGPQAQEIIERAFTPHHPQRWQEKSNFTLHLGYFRAGAK 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ L+    +P S+TGED  E + HGG+ V   I+ E   +   RLA  GEF++RAF 
Sbjct: 62  VLDEVLIGRMSAPGSYTGEDVYEINCHGGLYVAERIMRECIGL-GARLAEAGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL++AE++ DLI+++T+    L++  M G LS       D++    +FIEA +DF 
Sbjct: 121 NGKLDLIQAEAIVDLIAAKTDSSADLALAQMEGLLSQKILLLKDQVMETLAFIEAGIDFP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV++     +L  I          +   K G I+R G   VI+G  N GKSSL NAL
Sbjct: 181 E-DDVESLDRDALLQRISKGLELARDLLDGSKTGRILREGMLTVIVGQPNVGKSSLLNAL 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTDIPGTTRD +   + + G L+++ DTAG+RE++D+VEK GI+R++  +E A
Sbjct: 240 MGEERAIVTDIPGTTRDEIRESVTIGGILLQLVDTAGLRESEDLVEKLGIERSWKAMEKA 299

Query: 300 DLILLLKEINSK---KEISFPKNID--FIFIGTKSDLY------STYTEEYD------HL 342
           +LILL+ +   +   +E+      D   I +  K DL           E Y         
Sbjct: 300 ELILLIIQAGQELKAEELKILNQYDQSVIVLINKMDLLVGKEQGEEVLENYPTQQGVWIP 359

Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
            S     G ++L  +IK  +   K +K    + S+ R +  L + V  L       +   
Sbjct: 360 FSVKENLGFKQLEKEIKQRVYQGKAEKTKEPLLSNIRQITALERAVSALANGWDSVKNGL 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D+++ ++R A   + ++TG    E LLD IFS+FCIGK
Sbjct: 420 PWDMVSIDIRQALQEISQMTGDSVQESLLDDIFSRFCIGK 459


>gi|315185859|gb|EFU19624.1| tRNA modification GTPase TrmE [Spirochaeta thermophila DSM 6578]
          Length = 449

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/454 (31%), Positives = 230/454 (50%), Gaps = 19/454 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           M    + I A++T    SAI++IR SG  C +  + + + +K            G     
Sbjct: 1   MYRLDDRIVALATPWGRSAIAVIRASGAGCLEALDPLFRGRKTPSSMRGYSLAHGALVDP 60

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G +LD+ LL VF +P S+TGED+AE   HG  A V  I+  L +    R A PGEF+ 
Sbjct: 61  GTGEMLDEVLLAVFRAPHSYTGEDAAEISCHGSPAGVERIMRTL-RAHGFRAAEPGEFTL 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NGK+DL EAE++ +++S+ T     L++  + G L +      +K+  + + +E  
Sbjct: 120 RAFLNGKLDLTEAEAVHEVVSARTANAHTLALHRLEGRLRARIDAIKEKIASVVAEVEVQ 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LD+ E EDV++  S  ++ +      ++   ++  ++G + R G ++V+ G +NAGKSSL
Sbjct: 180 LDYPE-EDVEHPVSAHLIQEASH---EVDGLLATYRVGRLYREGVRVVLAGRTNAGKSSL 235

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
           FN   ++D AIV+++ GTTRD L   + L+G  V + DTAGIR+  D VE EGI+RT   
Sbjct: 236 FNLFMREDRAIVSEVHGTTRDYLEGWISLKGVPVLLYDTAGIRDGGDPVEAEGIRRTREI 295

Query: 296 VENADLILLLKE----INSKKEISFPK---NIDFIFIGTKSDLYSTY-TEEYDHLISSFT 347
           + +AD ++ L +    ++  +E    +       I +  K D  +     E    +S  T
Sbjct: 296 LSHADAVIYLVDGTEGLSEGEEALIAELGAERPLIPVWNKVDASAVLPPPEGFIPLSCRT 355

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIA 406
           GEG   L   +  +           +   +R    L +    LE       +   LD +A
Sbjct: 356 GEGFARLEETLHRVFPEAEGGGAEVVIDSERQRDALVRCRDSLEGGLDALSRGAPLDALA 415

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L  A  +LG+ITG V  E +L+ IFS FC+GK
Sbjct: 416 VYLHDAMEALGEITGEVTREDILERIFSCFCVGK 449


>gi|78185703|ref|YP_378137.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9902]
 gi|123580994|sp|Q3AVY3|MNME_SYNS9 RecName: Full=tRNA modification GTPase mnmE
 gi|78169997|gb|ABB27094.1| tRNA modification GTPase trmE [Synechococcus sp. CC9902]
          Length = 451

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 133/439 (30%), Positives = 237/439 (53%), Gaps = 16/439 (3%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGLDGRI-LDKGLLIVFP 70
                I++IRLSGP   QV + +      ++    +    +   +DG+  LD+ LL++  
Sbjct: 16  PGQGGIAVIRLSGPVAEQVAQAVVQCPGHQEWGSHRILYGHVMAVDGQRRLDEVLLLLMR 75

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
           +P SFTGED  E H HGG+  V  +LE + + P +R A PGEFS+RA  NG++DL +AE+
Sbjct: 76  APRSFTGEDVVEIHCHGGVMAVQQVLERVLEHPGVRRALPGEFSQRAVLNGRLDLTQAEA 135

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +++L+S+ +     L+M G+ G + +      ++L    + +EA +DF +  D+      
Sbjct: 136 VSELVSARSRRAADLAMAGLDGGIQARITVLRERLLDQLTELEARVDFED--DLPPLDGT 193

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
            +LN++  ++ ++ + ++ G+ G+ +R+G ++ ++G  N GKSSL N L++++ AIVT++
Sbjct: 194 ALLNELQAVRVELLALVADGERGDALRHGLRVALVGRPNVGKSSLLNRLSRRERAIVTEL 253

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE--- 307
           PGTTRD+L  ++ L+G  + + DTAGIR T+D VE+ GI R+   + +AD+++L+ +   
Sbjct: 254 PGTTRDLLESEIVLDGVPITLMDTAGIRATNDAVEQLGIARSEEALISADVVVLIVDGHA 313

Query: 308 ----INSKKEISFPKNIDFIFIGTKSDLY-STYTEEYDHLISSFTGEGLEELINKIKSIL 362
                +++     P ++  + +  KSDL         D   S+  G G +  +  +    
Sbjct: 314 GWTETDAQLLARIPNDVPRVVVANKSDLDGPPLPGLVDVQFSALNGAGEDAFVQVLLER- 372

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKITG 421
                     +  + R     S     LE +  + ++    D    +LR A   LG+ITG
Sbjct: 373 CGAGDAAGIVLSLNTRQRDLASVAAAALERSHEVAQQQLPWDFWTIDLREAIRGLGEITG 432

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               E +L+ +FS+FCIGK
Sbjct: 433 EELTEAVLERVFSRFCIGK 451


>gi|288802559|ref|ZP_06407998.1| tRNA modification GTPase TrmE [Prevotella melaninogenica D18]
 gi|288335087|gb|EFC73523.1| tRNA modification GTPase TrmE [Prevotella melaninogenica D18]
          Length = 462

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/454 (28%), Positives = 225/454 (49%), Gaps = 20/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRY--FFGLDG 58
            +T+ +++T     AI +IR+SG    +V + +      K     +  +L Y      +G
Sbjct: 11  SDTVCSLATQPG-GAIGVIRVSGEKAIEVTDKVFHGVRGKHLTDAKGNTLHYGEILDKEG 69

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D  L+ VF +P S+TGE+S E   HG   ++N +++ L      R A PGE+++RA+
Sbjct: 70  NTIDDVLVSVFRAPHSYTGENSTEISCHGSAYILNQVVKALI-NAGCRQAQPGEYTQRAY 128

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI++      ++++  + G  SS      ++L  + S +E +LDF
Sbjct: 129 LNGKMDLSQAEAVADLIAASNRATHQVALSQLKGHFSSELSLLREQLLKMTSLLELELDF 188

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+ E+++     E+      +   I       + G+ ++ G  + I+G +N GKS+L N 
Sbjct: 189 SDHEELEFADRTELKALAETIHQKIKLLTDSFETGKALKKGVPVAIVGKTNVGKSTLLNC 248

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIV+DI GTTRDV+    +++G   +  DTAGIR TDD +EK GI+R + +++ 
Sbjct: 249 LLHEEKAIVSDIHGTTRDVIEDTTEIKGVTFRFIDTAGIRHTDDQIEKLGIERAYQKMDE 308

Query: 299 ADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTG 348
           A ++L + +     E         +    I I  K D  +   ++ D+      IS+   
Sbjct: 309 AAIVLWVIDEQPTAEECTEMQRLTQGKHLITIFNKIDSKAVEPKQVDNDLHTVYISAKLK 368

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAE 407
           + ++ L   I              I +  RH   L+      L +    +     D+++E
Sbjct: 369 QNIKALEEAIYEAADIPEISENSVIITSARHYEALTHADESILRVIEALDFGLSGDLVSE 428

Query: 408 NLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           +LR+    L  IT G +   ++L  IF  FCIGK
Sbjct: 429 DLRICLHQLADITGGQITPHEVLGNIFKHFCIGK 462


>gi|294665117|ref|ZP_06730420.1| tRNA modification GTPase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605118|gb|EFF48466.1| tRNA modification GTPase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 446

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 146/449 (32%), Positives = 236/449 (52%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSGP   Q+   +    +  PR A    F    G +
Sbjct: 1   MSSSTSTIVAIASAAGIGGVGIVRLSGPQSVQIAAHL-GIARMRPRHAHYARFRDGQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P S TGED  E   HG   ++  ++     +   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFNAPHSLTGEDVVELQGHGSPVLLRQLVARCIAL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       + LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSQRVDALAETLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E +      +V + +   +N ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 -EPLDTLGGNQVRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R  +E+E AD
Sbjct: 238 GSERAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARVELERAD 297

Query: 301 LILLLKEINSKKEISFPKNIDFI------FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352
           L L++ +    +                 +I  K DL       +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDPQAARDAIGDAIDAVPRQLWIHNKCDLLGNAASLDANAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++++ L +    +     +  RH+  L +  ++ + A L      L++ AE LRL
Sbjct: 358 QLHIRLRALALGDGVDSVDGEFSARTRHVEALRRAEQHADAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446


>gi|167755185|ref|ZP_02427312.1| hypothetical protein CLORAM_00690 [Clostridium ramosum DSM 1402]
 gi|237734935|ref|ZP_04565416.1| tRNA modification GTPase mnmE [Mollicutes bacterium D7]
 gi|167705235|gb|EDS19814.1| hypothetical protein CLORAM_00690 [Clostridium ramosum DSM 1402]
 gi|229381711|gb|EEO31802.1| tRNA modification GTPase mnmE [Coprobacillus sp. D7]
          Length = 444

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/449 (31%), Positives = 245/449 (54%), Gaps = 14/449 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GR 59
           MN  ++ I A++T  L +AIS+IR+SGP C    +     K       ++ Y + +D G+
Sbjct: 1   MN--EDIIVAIATSRLEAAISMIRVSGPDCIAFVQKFFTGKIIEKPSHTINYGYIIDDGK 58

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ L+ ++    +FTGE+  E + HGG+ + + +LE   K    R+A  GEFS+RAF 
Sbjct: 59  RIDEVLVNIYRGTRTFTGEEMVEINCHGGVYITSRVLEVCIK-NGARMAERGEFSKRAFL 117

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE+++D+I+++      L+++G+SG +S       + L  I + IE ++D+ 
Sbjct: 118 NGRIDLSQAEAISDIITAKNSYATDLALKGISGSISGFIEDLKEDLIQIITQIEVNIDYP 177

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+  ++  +L     L   ++  +   K  ++++ G K VI+G  N GKSSL NAL
Sbjct: 178 EYDDVEELTASSLLPRSANLLTKMNKILDDSKNIKLVKEGIKTVIIGRPNVGKSSLLNAL 237

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++D AIVT+I GTTRD++   + ++G ++ + DTAGIRETDDI+E  G++++   +  A
Sbjct: 238 LREDKAIVTNIAGTTRDIVEGSISIDGVVLNMIDTAGIRETDDIIESMGVEKSKELIHQA 297

Query: 300 DLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           DL+LL+ + +        + +   ++   I +  K+D  +    + D ++ S     +  
Sbjct: 298 DLVLLVIDGSQSLSSEDMQLLELTEDATRIIVLNKADQGTKV--DLDGIVISAKDNQIST 355

Query: 354 LINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRL 411
           L  +IK +    K       I ++ R    L +  + L+ A    E     D+I  +L  
Sbjct: 356 LTEEIKKMFELGKIIDNNDHILTNARQTMLLQRASQALKQAVEAMEMMIPTDLIVTDLYE 415

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +L +I G    E LLD +F +FCIGK
Sbjct: 416 CWNNLKEILGEKAKEDLLDELFKRFCIGK 444


>gi|110597255|ref|ZP_01385543.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Chlorobium ferrooxidans DSM 13031]
 gi|110341091|gb|EAT59559.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Chlorobium ferrooxidans DSM 13031]
          Length = 474

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 154/464 (33%), Positives = 241/464 (51%), Gaps = 33/464 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK--------ASLRYFFGLDG 58
            I AV+T     A++I+R+SG   F +   I KKK+    +        A        +G
Sbjct: 14  PIAAVATPVGVGALAILRISGRGVFGIAGRIFKKKQNPAFRFAEAKGYTAHFGSVHDSEG 73

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ + +V  +P SFT ED  EF  HGG  VV  IL+ L      RLA PGEF+RRAF
Sbjct: 74  -LIDEVVALVLRAPNSFTMEDMVEFTCHGGPVVVQHILKVLL-DEGCRLAEPGEFTRRAF 131

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDLL+AE++ ++I + +E   R ++  M G LS       ++L    + +E +LDF
Sbjct: 132 LNGRIDLLQAEAIGEMIHARSESAFRTAVTQMQGTLSLRLEAMREQLLRSCALLELELDF 191

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           SE EDV+  + +E+   +  L+ ++   +   + G I++ G   VI G  NAGKS+L N 
Sbjct: 192 SE-EDVEFQNRRELQQQLGVLQEELRRLVDSYQHGRIMKEGVATVIAGRPNAGKSTLLNT 250

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L   + +IV+ +PGTTRD +         + +++DTAG+RE ++ VE EG+KR++ ++  
Sbjct: 251 LLGLERSIVSHMPGTTRDYIEECFLYNKTMFRLTDTAGLREAEEAVEHEGVKRSYRKIAE 310

Query: 299 ADLILLLKEI---NSKKEISFP-------KNIDFIFIGTKSDLYSTYTEEY--------- 339
           ADLI+ + ++   +   E++         +N   I    K DL S   E           
Sbjct: 311 ADLIVYILDLTLDDYADEVARILEFKSEYRNARMIVAANKIDLASESPERIQELREATGC 370

Query: 340 -DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMAS-LN 396
               IS+  GEGLE L   + +++    K    S+  +  RH   L      LE A  L 
Sbjct: 371 DVCGISAAKGEGLETLKELMSTMVVGLDKLHEASVLVTSLRHYEALRNASDALENARMLI 430

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +   ++IA  LR A   +G+ITG V  E++L++IF +FCIGK
Sbjct: 431 NSNSETELIAFELRSALNYVGEITGKVINEEILNMIFDQFCIGK 474


>gi|313202911|ref|YP_004041568.1| tRNA modification GTPase trme [Paludibacter propionicigenes WB4]
 gi|312442227|gb|ADQ78583.1| tRNA modification GTPase trmE [Paludibacter propionicigenes WB4]
          Length = 462

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 139/463 (30%), Positives = 223/463 (48%), Gaps = 32/463 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-------FPRKASLRYFFGLDGR 59
           TI A+ST      I++IR+SG   F+    I   +K             S          
Sbjct: 3   TITAISTAPGTGGIAVIRVSGKDAFKNFNPIFIPRKKNFVFLEQEANTVSFGNIVNGKNE 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L+ VF +P SFTGED  E   HG + V   IL+ L       LA PGEF++RAF 
Sbjct: 63  IVDEVLVSVFRAPHSFTGEDVVEISCHGSVFVQQQILQLLINQH-CVLAQPGEFTQRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI++ +    R+++  M G  SS   +   +L +  S +E +LDF+
Sbjct: 122 NGKMDLSQAEAVADLIAANSAASHRMALNQMRGGFSSELLKLRTQLLNFVSLVELELDFN 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV+     ++ +    ++  I        LG  ++NG  + ++G +N GKS+L N L
Sbjct: 182 E-EDVEFADRTQLKSLATTIERLILKLSDSFSLGNALKNGIPVALVGETNVGKSTLLNVL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIV+DI GTTRDV+   ++++G   +  DTAGIR+T D +E  GI+RT+ ++E A
Sbjct: 241 LNEDKAIVSDIHGTTRDVIEDSINIDGITFRFIDTAGIRDTKDKIENMGIERTYQKIEQA 300

Query: 300 DLILLLKEINSKKE---------ISFPKNIDFIFIGTKSD------------LYSTYTEE 338
            ++L + +     E                  I +  K D            L+  +  E
Sbjct: 301 SIVLWILDCTQLSEHMEWLTDRIAKRSAGKKVILVFNKIDKIADDERDVLSQLFEQFEGE 360

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397
             + IS+      ++L   +              + S+ RH   L+     +       +
Sbjct: 361 RIY-ISARERINTDKLQKALTKAAQLPDIHPGDVVVSNVRHYEALNHAHSAICRVIDGLD 419

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                D +++++R     LG+ITG +  +++L  IF KFCIGK
Sbjct: 420 AGISGDFLSQDIRECMHFLGEITGQISNDEILGNIFGKFCIGK 462


>gi|78050039|ref|YP_366214.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|123583683|sp|Q3BLZ9|MNME_XANC5 RecName: Full=tRNA modification GTPase mnmE
 gi|78038469|emb|CAJ26214.1| tRNA modification GTPase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 446

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 147/449 (32%), Positives = 237/449 (52%), Gaps = 12/449 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+    TI A+++ A    + I+RLSG    Q+   +    +  PR A    F    G +
Sbjct: 1   MSSSASTIVAIASAAGIGGVGIVRLSGAQSVQIAAQL-GIARMQPRHAHYARFRDGQGAV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF N
Sbjct: 60  IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       D LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSRRVDAVADTLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E +      ++ + +   +N ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 -EPLDTLGGNQLRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVTD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E AD
Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297

Query: 301 LILLLKEINSKKEISFPKNIDFI------FIGTKSDLYSTY--TEEYDHLISSFTGEGLE 352
           L L++ +    +                 +I  K DL       +     +S+ TG+GLE
Sbjct: 298 LALVVLDARDPQAARDAIGDAIDAVPRQLWIHNKCDLLGNAVSLDANAIAVSAVTGQGLE 357

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +L  +++++ L +    +     +  RH+  L +  ++++ A L      L++ AE LRL
Sbjct: 358 QLHIRLRALALGDGVDSVEGEFSARTRHVQALRRAEQHVDAADLELGFEQLELAAEELRL 417

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +LG+ITG +  + LL  IFS FCIGK
Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446


>gi|260425018|ref|ZP_05733999.2| tRNA modification GTPase TrmE [Dialister invisus DSM 15470]
 gi|260403939|gb|EEW97486.1| tRNA modification GTPase TrmE [Dialister invisus DSM 15470]
          Length = 485

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/460 (31%), Positives = 240/460 (52%), Gaps = 24/460 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGL--DG 58
           +E+ TI A++T      I IIRLSG S  ++ + I    K K F        +FG   DG
Sbjct: 28  YEETTIAAIATAPGEGGIGIIRLSGVSAAEIADKIFHTGKIKTFKEAVPYMMYFGHVTDG 87

Query: 59  RI-LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+GL +   +P S+TGED  E  +HG    +   L  LA       A  GEF++RA
Sbjct: 88  EKRIDEGLAVYMKAPHSYTGEDVVEIQIHGSAEALRETL-ALALRSGAVPAMRGEFTKRA 146

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++ D+IS++ E     +   +SG LS      +++L  + + +E  +D
Sbjct: 147 FLNGRLDLAQAEAVMDIISAKGEAALTQAESHLSGALSGFVHGVMEELKDLITKLEVTID 206

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E ED+++ + +E  + +  +   +S+ + + + G +IR G +  I+G  NAGKSSL N
Sbjct: 207 YPE-EDLEDLTMEETGDALEKIDKSLSALLKRSEEGRVIREGLRTAIIGRPNAGKSSLLN 265

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL +++ AIVTD+PGTTRD +   + + G  + + DTAG+RETD+ VE+ GI+R    +E
Sbjct: 266 ALLQEERAIVTDVPGTTRDTIEEAVRISGVSLLLMDTAGLRETDNKVEQIGIERARASME 325

Query: 298 NADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTYTEEYDHLI-------- 343
            ADLIL + + +S  +    +          I I  K DL      E    I        
Sbjct: 326 KADLILAVIDGSSPLDEEDKEILHSLVGKKAIVILNKYDLTPEVKAEDIWEIAGHVPVVS 385

Query: 344 -SSFTGEGLEELINKIKSILSNKFKKLP-FSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
            S+  G G++EL  +++ I   +          ++ RH+  + + +  +  A  +  +  
Sbjct: 386 LSARYGSGMDELREELRKITEKQDTDAGRILFLTNLRHVELVRKALDNVLRARASVREGL 445

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D I  +L  A  ++G+ITG    ++L+  IFS+FC+GK
Sbjct: 446 QADFIVIDLTEAWKTMGEITGDTMDDELIHSIFSRFCVGK 485


>gi|42563304|ref|NP_177924.3| tRNA modification GTPase, putative [Arabidopsis thaliana]
 gi|51536472|gb|AAU05474.1| At1g78010 [Arabidopsis thaliana]
 gi|52421301|gb|AAU45220.1| At1g78010 [Arabidopsis thaliana]
 gi|332197936|gb|AEE36057.1| putative tRNA modification GTPase [Arabidopsis thaliana]
          Length = 560

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/471 (30%), Positives = 234/471 (49%), Gaps = 40/471 (8%)

Query: 7   TIFAVSTGAL--PSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-------------LR 51
           TI A+ T     P A+ I+RLSGP   +V   + +  K   +K S               
Sbjct: 93  TIVAIVTPIGGPPGAVGIVRLSGPKAVEVARRVFRSAKKTKKKESDSDTWRPKSHFVEYG 152

Query: 52  YFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
                +G ++D+ L +   +P S+T ED  E   HG    +  +L    +    RLA PG
Sbjct: 153 AVVDSNGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCVEA-GARLAEPG 211

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+ RAF NG++DL +AE++  LIS+++      ++EG+ G  SSL      +   + + 
Sbjct: 212 EFTLRAFLNGRLDLSQAENVEKLISAKSSAAADAALEGIQGGFSSLVKSLRAQCIELLTE 271

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           IEA LDF +  ++     + V+N I  +  D+ S +      +++++G +I I+G  N G
Sbjct: 272 IEARLDFED--EMPPLDIESVINKITSMSQDVESALDTANYDKLLQSGLQIAIVGRPNVG 329

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NA +K + AIVT++ GTTRDV+  ++ + G  + + DTAGIRET+DIVEK G++R
Sbjct: 330 KSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDTAGIRETNDIVEKIGVER 389

Query: 292 TFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSD---------LYSTY 335
           +    + AD+I++           +++       +   I +  K D         L    
Sbjct: 390 SETAAKVADVIIMAVSAVEGWTEEDTELLRKIQSDKPMILVMNKIDCAPPGSCDQLEDQR 449

Query: 336 TEEYDHLISSF----TGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL 390
            +E     S F    TG+G+EEL + I  IL  ++          ++R    L +T   L
Sbjct: 450 KKEEVFHKSVFTSAVTGQGIEELEDAILEILGLDRVPTGGHQWTVNQRQCEQLVRTKEAL 509

Query: 391 -EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +    E +  +D     LR A++SL +I+G    E++L  IF+KFCIGK
Sbjct: 510 VRLREAIEDEIPIDFWTIELREAALSLAQISGQDVSEEVLSSIFAKFCIGK 560


>gi|169351641|ref|ZP_02868579.1| hypothetical protein CLOSPI_02422 [Clostridium spiroforme DSM 1552]
 gi|169291863|gb|EDS73996.1| hypothetical protein CLOSPI_02422 [Clostridium spiroforme DSM 1552]
          Length = 444

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 139/442 (31%), Positives = 240/442 (54%), Gaps = 12/442 (2%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGLL 66
           I AV+T  L +AISIIR+SGP      +     K       ++ Y + +D G+ +D+ L+
Sbjct: 6   IVAVATSRLEAAISIIRISGPESIAFVQKFFTGKIIDKESHTINYGYIIDDGKRIDEVLV 65

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
            ++   ++FTGE+  E + HGG+ +   +LE   K    R+A  GEFS+RAF NG+IDL 
Sbjct: 66  NIYRGKKTFTGEEMVEINCHGGVYITKRVLEVCIK-NGARIAERGEFSKRAFLNGRIDLS 124

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE+++D+IS++      L++ G+ G +S+      + L  I + IE ++D+ E +DV+ 
Sbjct: 125 QAEAISDIISAKNSYASELALNGIRGNISNFIEDLKEDLIKIITQIEVNIDYPEYDDVEE 184

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            ++  +L +   L   ++  ++  K  ++++ G K VI+G  N GKSSL NAL +++ AI
Sbjct: 185 LTATSLLPESKVLLEKMNKILNDSKNIKLVKEGIKTVIIGKPNVGKSSLLNALLQEEKAI 244

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VT+I GTTRD++   + ++G ++ + DTAGIRETDDI+E  G++++   +  ADL+LL+ 
Sbjct: 245 VTNIAGTTRDIVEGSISIDGIVLNMIDTAGIRETDDIIESMGVEKSKELINQADLVLLVI 304

Query: 307 EIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           + +       ++ +    + + I +  K+D         D ++ S     +  L NK+K 
Sbjct: 305 DGSLKLDQGDQELLELTNDSNRIIVLNKAD--QGIKVNLDGVVISAKDSDIGALTNKVKE 362

Query: 361 ILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGK 418
           +    K       I ++ R    L +  + L  A    +     D+I  +L     +L +
Sbjct: 363 MFELGKIIDNNDHILTNARQTMLLQKASQALNQAVEAMKMLVPTDLIVTDLYECWNNLKE 422

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           I G    E LLD +F +FCIGK
Sbjct: 423 ILGEKAKEDLLDELFKRFCIGK 444


>gi|285019932|ref|YP_003377643.1| tRNA modification GTPase [Xanthomonas albilineans GPE PC73]
 gi|283475150|emb|CBA17649.1| putative trna modification gtpase protein [Xanthomonas albilineans]
          Length = 447

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 231/448 (51%), Gaps = 12/448 (2%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
           +   +TI A++T      + ++R+SGP+  ++ + +       PR A   +F    G  L
Sbjct: 3   SSANDTIAAIATAPGAGGVGMVRVSGPAAGRIADGLGLGAL-LPRSARYAHFRDAQGDTL 61

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D G+ + FP+P SFTGED  E   HG   ++  ++    ++   R A PGEFS RAF N 
Sbjct: 62  DDGIALWFPAPRSFTGEDVLELQAHGSPVLLRQLVARCCEL-GARPARPGEFSERAFLNR 120

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ADLI++      R +   + G  S       +++  +R  +EA +DF++ 
Sbjct: 121 KLDLAQAEAIADLIAAGDLRAARAARRSLDGVFSRRVEDLAEQVIRLRLHVEAAIDFAD- 179

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E ++     +V   +  ++ D++    + + G  +R+G   V++G  NAGKSSL NALA 
Sbjct: 180 EALETLGGAQVRTGLQQVRADLAQLHLEAERGRRLRDGLHAVLVGPPNAGKSSLLNALAG 239

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
              AIVTDI GTTRD L   + ++G  + + DTAG+R+  D +E+EG++R  LE++ ADL
Sbjct: 240 SARAIVTDIAGTTRDTLHETVCVDGLELTLVDTAGLRDGGDAIEREGMRRARLELQRADL 299

Query: 302 ILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD--HLISSFTGEGLEE 353
            L++ +        +    +       ++I  K DL +   +       IS+ TG GLE+
Sbjct: 300 ALVVLDARDVAVGRAAVAEAIADVPQRLWIHNKCDLLTKVPDACADTVYISAATGSGLEQ 359

Query: 354 LINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
           L   +++I      +       +  RH+  L +   +   A    +   L++ AE LRL 
Sbjct: 360 LHLHLRAIACATAGEGSEGEFSARIRHVEALQRASMHAAAAMAELEHERLELAAEELRLT 419

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +L +I G    + LL  IFS FCIGK
Sbjct: 420 HNALCEIVGTFSADDLLGRIFSSFCIGK 447


>gi|255545636|ref|XP_002513878.1| gtpase mss1/trme, putative [Ricinus communis]
 gi|223546964|gb|EEF48461.1| gtpase mss1/trme, putative [Ricinus communis]
          Length = 557

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/471 (30%), Positives = 226/471 (47%), Gaps = 40/471 (8%)

Query: 7   TIFAVSTGAL--PSAISIIRLSGPSCFQVCEFICKKK---------KPFPRKASLRYFFG 55
           TI A+ T     P+A+ I+RLSGPS   V   + K           +P            
Sbjct: 90  TIAAIVTSVGGPPAAVGIVRLSGPSAVDVAARVFKPMSKKKKKKIWQPTSHVVDYGVALD 149

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +G ++D+ L +   SP S+T ED  E   HG    +  +L    +    RLA PGEF+ 
Sbjct: 150 NEGNVIDEVLALPMLSPRSYTCEDVVELQCHGSEVCLTRVLRACLQA-GARLAEPGEFTL 208

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++  LIS+ +      ++ G+ G  +SL      +   + + IEA 
Sbjct: 209 RAFLNGRVDLSQAENVGKLISANSVTAADAALAGLQGGFASLIKSLRAQCIELLTEIEAR 268

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF +  ++       +++ I  +  DI   +      +++++G +I ++G  N GKSSL
Sbjct: 269 LDFDD--EMPPLDLNLIVDRIHVMSQDIEIALETANYDKLLQSGLQIALVGRPNVGKSSL 326

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NA +K + AIVT+I GTTRDV+   + + G  V + DTAGIRETDDIVEK G++R+   
Sbjct: 327 LNAWSKSERAIVTEIAGTTRDVVEAGVTVGGIPVTLLDTAGIRETDDIVEKIGVERSEAV 386

Query: 296 VENADLILLLK---------EINSKKEISFPKN-----IDFIFIGTKSDLYSTYTEEYDH 341
              AD+I+L           +      I   K         +    K D   + + E+  
Sbjct: 387 AMGADVIILTISAFDGWTSEDSELLSRIESNKKSVGSSTPVVLAINKIDTAPSLSMEWIG 446

Query: 342 LIS----------SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL 390
             S          + TG+G++EL   I  I+  N+          ++R    L +T   L
Sbjct: 447 RYSKAFSKHVFTCAVTGQGIKELEMAISEIVGLNRIPTGGRKWTVNQRQCEQLMRTKEAL 506

Query: 391 EMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                + KD   LD    +LR A+++LG+I+G    E++L  IF KFCIGK
Sbjct: 507 ARLKSSIKDEMPLDFWTIDLRDAALALGQISGEGISEEVLSNIFGKFCIGK 557


>gi|260428910|ref|ZP_05782887.1| tRNA modification GTPase TrmE [Citreicella sp. SE45]
 gi|260419533|gb|EEX12786.1| tRNA modification GTPase TrmE [Citreicella sp. SE45]
          Length = 427

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/437 (35%), Positives = 242/437 (55%), Gaps = 13/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    + +++IR+SGP  ++    +     P PR+ ++R      G +LD+ L
Sbjct: 2   DTIFALASAPGKAGVAVIRVSGPLAWEAGVRLAGS-LPEPRRTAVRVLRDRQGGVLDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP   SFTGE   EF +HG  A++  +L EL  +  LR+A PGEF+RRA EN ++DL
Sbjct: 61  VLAFPDGASFTGERVVEFQIHGSQAILRAVLRELDAVDGLRMAEPGEFTRRALENDRLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E+LADLI SETE QR  ++   SG L      W   L    S +E  +DF++ E+V 
Sbjct: 121 TQVEALADLIESETESQRVQALRVFSGALGQKVDGWRRDLIQAASLLEVTIDFAD-EEVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S +V   +  +   + + +      E IR+G+++ I+G  N GKSSL NAL+ +D A
Sbjct: 180 VDVSDDVSGFLDRVTLALEAELRGLDAAERIRSGFEVAIVGAPNVGKSSLLNALSGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++I GTTRDV+ + +++ G  V + DTAG+RET D VEK GI R       +DL ++L
Sbjct: 240 ITSEIAGTTRDVIEVRMEIAGLPVTLLDTAGLRETQDPVEKIGIARALDRARTSDLRVIL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            +     EI+       I +G+K+DL       + + +S+ TG+G++ L+ +I   LS +
Sbjct: 300 VDDRGLPEITPVAGD--IVVGSKADLT-----GHANGLSAVTGQGVDWLVREIGERLSER 352

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCV 423
            +     + + +RH     Q    L  A           D+ AE +R A  SL  + G V
Sbjct: 353 VQS--AGLATRERHRVAFEQGKTSLGAAKDLLTRGPDCYDLAAEEIRSAIRSLELLIGRV 410

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LLD IFS FC+GK
Sbjct: 411 DVENLLDEIFSSFCLGK 427


>gi|240047711|ref|YP_002961099.1| tRNA modification GTPase TrmE [Mycoplasma conjunctivae HRC/581]
 gi|239985283|emb|CAT05296.1| tRNA modification GTPase mnmE [Mycoplasma conjunctivae]
          Length = 440

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 147/443 (33%), Positives = 246/443 (55%), Gaps = 12/443 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A+++G +  AISIIR+SG + FQ+ E I   K    ++ +  +     G+ +D+ 
Sbjct: 3   NDTIVAIASGQVNQAISIIRISGDNAFQIMEQIFSGKIGKSQQITYGWIHDK-GQKIDEV 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F   ++F G+ + E + HGG+   N ILE +      RLANPGEFS R+F NGK+D
Sbjct: 62  LVLWFEGSKNFVGQPTVEINAHGGVLNTNIILELILSTKLARLANPGEFSMRSFLNGKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++A+++ DLI ++T  Q  L+++   G  S    + I  L  I   IE ++D+ E +DV
Sbjct: 122 LVKAQAINDLIHAQTRSQHSLALKQFEGHTSKYISELIVDLEAIIGIIEVNIDYPEYDDV 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +S+ +L  I  L+   ++ + +     +I  G K+ I+G  N+GKSSL NAL K++ 
Sbjct: 182 EEMTSQILLPTIDKLEQKFANLLERANRSRLIFEGIKVTIVGVPNSGKSSLLNALLKENK 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV++I GTTRDV+  +  ++  L K+SDTAGIR+  D +E+ GI++ F ++   DLI+ 
Sbjct: 242 AIVSEIAGTTRDVVEGNFQIDNILFKVSDTAGIRKAKDQIEQIGIQKAFEQISKNDLIIH 301

Query: 305 LKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           + +         ++  S   N  +I +  K+DL     ++ + +  S   + +E LI++I
Sbjct: 302 VIDSQKGFDKTDQEIASTITNQVYIQVYNKADLIE--AKQKNQIYISAKNDEIETLISEI 359

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLG 417
           K      F ++     S+ R +  +   +  L+ A +    + G D+   ++R A   L 
Sbjct: 360 KKKYH--FLQIDDDFVSNTRQISQIRMALISLKEAKIALLNNLGPDVAIVDIRQAWKDLK 417

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
            I G  D E LLD IFS FC+GK
Sbjct: 418 SILGQADDEDLLDSIFSNFCLGK 440


>gi|160902854|ref|YP_001568435.1| tRNA modification GTPase TrmE [Petrotoga mobilis SJ95]
 gi|205415791|sp|A9BHZ7|MNME_PETMO RecName: Full=tRNA modification GTPase mnmE
 gi|160360498|gb|ABX32112.1| tRNA modification GTPase TrmE [Petrotoga mobilis SJ95]
          Length = 452

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 143/455 (31%), Positives = 240/455 (52%), Gaps = 24/455 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A+S+     AI ++R+SG     + +   K+KK  P+K    + +  +G  +D+ 
Sbjct: 3   NDTIVAISSPIGTGAIGVVRISGDHVKNIIDQALKRKKYTPKKMYYGWLYDKEGEKVDEI 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
             +    P S+TGED  E   HGG  +   +L  + K    R A PGEF++RA  NGK+D
Sbjct: 63  TWVYHSQPHSYTGEDMLEIFCHGGKLITYAVLNTIIK-YGARQALPGEFTKRAVLNGKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++AE++ ++I+SETE+  + S   +   +S       + L +I + IE ++D+ ++ + 
Sbjct: 122 LIKAEAVNNVITSETEISLKASFNQLKNAVSEKIKDIKNSLLNISAQIEVEMDYPDDIEF 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           ++   K   N ++ + N ++  + + + G I   G + VI+G  N+GKS+L NAL +KD 
Sbjct: 182 EDHDLK---NKLVHIVNSMNQLLKEAENGIIAVEGVRTVIVGKPNSGKSTLLNALLRKDR 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRD +  +L++ G  +++ DTAGIR T+D +E+ GI+RT   ++N+ LIL 
Sbjct: 239 AIVTDIPGTTRDTIEENLNINGIYIRLIDTAGIRYTEDTLERVGIERTINSIKNSHLILF 298

Query: 305 LKEINS----KKEISFPK-----NIDFIFIGTKSD---------LYSTYTEEYDHLISSF 346
           + +  +    + E+ + K     +   I I  KSD         L        D +I S 
Sbjct: 299 VLDGTTPFTQEDELIYNKLNELGDKTVIIILNKSDSPNFTENNYLSLKQKNPNDFVIISA 358

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDII 405
               ++ L NKI      K   +     +++R    L  +  + L   +  EK    DII
Sbjct: 359 KNGAIKNLENKIYEKFFEKV-NIEEPTLTNQRQKITLESSKEFVLNAINSLEKGFSNDII 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++R A   + +++G    E+LLD IFS FC+GK
Sbjct: 418 MYDVRKALEKIYELSGENYTEELLDKIFSTFCVGK 452


>gi|258406257|ref|YP_003198999.1| tRNA modification GTPase TrmE [Desulfohalobium retbaense DSM 5692]
 gi|257798484|gb|ACV69421.1| tRNA modification GTPase TrmE [Desulfohalobium retbaense DSM 5692]
          Length = 461

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 135/459 (29%), Positives = 231/459 (50%), Gaps = 23/459 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRYFFGLD 57
              ETI A++T      + I+RLSGP    V + +    +       P +    +   + 
Sbjct: 5   QSTETIGAIATPLGSGGVGIVRLSGPKSLTVAQRLFLSARQTFEAFKPYRLHHGWVTDVH 64

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  LD+ L+   P P S++GED  E + HGG AVV  +LE + +   +RLA PGEF+ RA
Sbjct: 65  GARLDEVLVSFMPGPGSYSGEDIVEINCHGGPAVVQAVLEAVLEC-GVRLARPGEFTLRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           + NG++DL +AE++A++I++ T    RL+   ++G L         +L  +R  +   +D
Sbjct: 124 YLNGRLDLTQAEAVAEMINAPTASSLRLAGSKLAGGLGRYIRDLRQRLESLRVQMCVAVD 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E E+++  + +E+   +  +  DI + ++  +     R+G  +V+ G  NAGKSSL N
Sbjct: 184 FPE-EEIECLAPEELQAGLEQVLVDIEAIMANFERDRYWRDGALVVLAGRVNAGKSSLMN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           A+  ++ AIVT I GTTRD L   ++L G  V++ DTAG+RETDD+VE+ G+ R+   +E
Sbjct: 243 AILGRERAIVTPIAGTTRDYLEEQVNLSGLPVRLVDTAGLRETDDLVERAGLSRSRELLE 302

Query: 298 NADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYS-TYTEEYD-------HLI 343
            ADL+ ++ +       + +  +    N   + +  K DL   T T+E            
Sbjct: 303 QADLVCVVLDSSQALTADDRALLQEAPNETTLVVLNKQDLPPHTETQEAVAAQGLPTVPA 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
            +   +G++ LI  ++  L  + ++     +  + R    L+Q    L            
Sbjct: 363 VAVEADGVDALIRAVRQRLVGERQEPEQGELVPNLRQSQGLAQAREELRALYDECRNGVP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D+++  L  A   L +I G +    +L+ +F +FCIGK
Sbjct: 423 YDLLSVRLETACTILSEIIGEMTPAAVLEQVFGEFCIGK 461


>gi|148657267|ref|YP_001277472.1| tRNA modification GTPase TrmE [Roseiflexus sp. RS-1]
 gi|148569377|gb|ABQ91522.1| tRNA modification GTPase trmE [Roseiflexus sp. RS-1]
          Length = 471

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 148/467 (31%), Positives = 233/467 (49%), Gaps = 33/467 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFGLD 57
           M ++ +TI A++T      I I+R+SG    ++ E I    +P    P +         +
Sbjct: 11  MLYD-DTIAAIATPPGEGGIGIVRISGRDALKILERIFVPVRPGRWKPYQMRYGRVVDQN 69

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ++D+ L +    P SFT ED+AE  VHGG  VV  +L++ A     R A PGEF+ RA
Sbjct: 70  GAVVDEALAVFMRGPRSFTAEDTAEISVHGGPLVVERVLQQ-ALAAGARAAAPGEFTMRA 128

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE+  D+I++ T     L+   + G LS    +  D L    ++  A +D
Sbjct: 129 FLNGRIDLAQAEATLDIITARTTTALALAEAQLGGWLSQELHRIRDLLMDPLAYCTALVD 188

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E+E       +++   +      + + ++  + G I R G +  ++G  NAGKSSL N
Sbjct: 189 FPEDE----VDPQDIETPLTAAVQALDALVASAQHGIIYRQGARAALIGRPNAGKSSLLN 244

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL + D AIVT IPGTTRD L     L G  V ++DTAGI E+DD VE+ G+ R+   V 
Sbjct: 245 ALLRVDRAIVTPIPGTTRDTLEETASLGGVPVVLTDTAGIVESDDPVERLGVARSRQAVR 304

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYS-------TYTEEYDHLI- 343
            ADL LL+ ++      + ++ ++  +    I    K DL             EY+ +  
Sbjct: 305 LADLALLVVDVSLPVADDDREIVALTEEKRTILTLNKIDLIDADRSIIAARQREYEQIRG 364

Query: 344 ---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
                    S+ TG+GL+EL   +  +L          + ++ RH   L++   +   A 
Sbjct: 365 KAFDAMVTVSALTGQGLDELGATVARLLLGAPIAADGRLVTNARHRDALARAADHARDAL 424

Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              ++    D++A +L  A  ++G++TG    E LL  IFS+FCIGK
Sbjct: 425 TGFQQGVSPDLLAVDLTAAINAIGEVTGESVGEDLLHAIFSRFCIGK 471


>gi|89897801|ref|YP_521288.1| hypothetical protein DSY5055 [Desulfitobacterium hafniense Y51]
 gi|122480417|sp|Q24M98|MNME_DESHY RecName: Full=tRNA modification GTPase mnmE
 gi|89337249|dbj|BAE86844.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 459

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 151/460 (32%), Positives = 241/460 (52%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRYFFGLDG-R 59
            +TI A++T     +I ++RLSGP   ++ E       P   +     +L   +   G +
Sbjct: 2   DDTIIALATAVGEGSIHVLRLSGPQAQEIIERAFTPHHPQRWQEKSNFTLHLGYFRAGAK 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ L+    +P S+TGED  E + HGG+ +   I+ E   +   RLA  GEF++RAF 
Sbjct: 62  VLDEVLIGRMSAPGSYTGEDVYEINCHGGLYIAERIMRECIGL-GARLAEAGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL++AE++ DLI+++T+    L++  M G LS       D++    +FIEA +DF 
Sbjct: 121 NGKLDLIQAEAIVDLIAAKTDSSADLALAQMEGLLSQKILLLKDQVMETLAFIEAGIDFP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV++     +L  I          +   K G I+R G   VI+G  N GKSSL NAL
Sbjct: 181 E-DDVESLDRDALLQRISKGLELARDLLDGSKTGRILREGMLTVIVGQPNVGKSSLLNAL 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTDIPGTTRD +   + + G L+++ DTAG+RE++D+VEK GI+R++  +E A
Sbjct: 240 MGEERAIVTDIPGTTRDEIRESVTIGGILLQLVDTAGLRESEDLVEKLGIERSWKAMEKA 299

Query: 300 DLILLLKEINSK---KEISFPKNID--FIFIGTKSDLYS------------TYTEEYDHL 342
           +LILL+ +   +   +E+      D   I +  K DL +               +     
Sbjct: 300 ELILLIIQAGQELKAEELKILSQYDQSVIVLINKMDLLAGKERGEEVLENYPTQQGVWIP 359

Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
            S     G ++L  +IK  +   K +K    + S+ R +  L + V  L       +   
Sbjct: 360 FSVKENLGFKQLEKEIKQRVYQGKAEKTKEPLLSNIRQITALERAVSALANGWDSVKNGL 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D+++ ++R A   + ++TG    E LLD IFS+FCIGK
Sbjct: 420 PWDMVSIDIRQALQEISQMTGDSVQESLLDDIFSRFCIGK 459


>gi|226355396|ref|YP_002785136.1| tRNA modification GTPase TrmE [Deinococcus deserti VCD115]
 gi|226317386|gb|ACO45382.1| putative tRNA modification GTPase [Deinococcus deserti VCD115]
          Length = 439

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/442 (32%), Positives = 232/442 (52%), Gaps = 17/442 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGRIL 61
           +TI A++T    + + I+R+SGP    V + I   ++   R    R+ FG     DG +L
Sbjct: 8   DTIAAIATAPGSAGVGIVRVSGPEALTVADGIFSGRRTPSRIRGGRFVFGQLIAADGEVL 67

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+GL +VF  P S+TGED AE   HG  AV+  +L  + ++   RLA PGEF+ RA+ +G
Sbjct: 68  DEGLCLVFRRPHSYTGEDVAELQTHGSPAVLGRVLSRVLEL-GARLARPGEFTLRAYLSG 126

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++  L+ ++T+  RR +  G+SG L +   +    +T   + ++A LD+ E 
Sbjct: 127 RLDLAQAEAVLGLVEAQTDAARRQASLGLSGALGTRVARIGANITRTLAAVQAMLDYPE- 185

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E V     +  L      + D+S  +   + G++   G ++ ++G  N GKSSL NAL  
Sbjct: 186 EGVPEEDRELPL---QAAEQDLSELVQSARAGQVATRGARLALIGRPNVGKSSLLNALLG 242

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            + +IVT IPGTTRD L   ++L G  V + DTAGIR T D VE  G+++       ADL
Sbjct: 243 YERSIVTPIPGTTRDYLEAGVELAGVPVTLVDTAGIRHTTDQVEAAGVRQAVALAGAADL 302

Query: 302 ILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           +L L++    +E      P+    I + TK+DL   + +     +S+ TGEGL EL   I
Sbjct: 303 VLALEDGQQPREPLPTELPEGARVIRVQTKADLEPAWNDPGALRVSAVTGEGLPELREAI 362

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
            + L     +    + + +R      + + +++ A    +    D+ +  L  A  +L  
Sbjct: 363 HAALLGDAARSEAWLTT-ERQADAARRALGHVQAA----RTLPDDLASWELEEALRALSD 417

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           +TG    E ++D +F  FC+GK
Sbjct: 418 LTGRDVQEDVVDAVFRNFCVGK 439


>gi|51244709|ref|YP_064593.1| tRNA modification GTPase TrmE [Desulfotalea psychrophila LSv54]
 gi|50875746|emb|CAG35586.1| probable tRNA modification GTPase (TrmE) [Desulfotalea psychrophila
           LSv54]
          Length = 501

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 223/462 (48%), Gaps = 26/462 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGR 59
           + ETI A+ST      I +IR+SG     + + I +         S + ++G     DG 
Sbjct: 41  DNETIAAISTPMGTGGIGVIRISGKESLTILQTIFRPHNDSCSYRSHQMYYGQIVAADGH 100

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+ L++   +P+++T ED  E H HG   V+  +LE L       LA PGEF++RAF 
Sbjct: 101 QLDEVLVVYMRAPKTYTCEDIVEIHCHGNFLVLQNVLE-LVIEKGASLAEPGEFTKRAFF 159

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D++S++T     ++ E ++G L        + L H+R+  E  +DF 
Sbjct: 160 NGRIDLTKAEAVIDVLSAKTRKGVDVAQEQLAGSLYRRIEPIRNALVHMRALFEVAIDFP 219

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           ++        +  L     +   +   ++    G I R G  +VI G  N GKSSL NA+
Sbjct: 220 DQSHDIVDYEQIDLQLKTEVIAPVKELLAGVDRGRIYRQGISMVIAGRPNVGKSSLLNAV 279

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            +++ A+VT I GTTRD +   +D+ G  V+I DTAGIR     VE  GI+R    + +A
Sbjct: 280 LQEERALVTSIAGTTRDSIEEMVDILGMPVRIVDTAGIRRQAGEVEALGIQRAKDLINSA 339

Query: 300 DLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYST------------YTEEYDH 341
           DL+L + + + + + S  +      +   I +  K DL +                    
Sbjct: 340 DLVLFMVDGSRQLDQSDLELYEDIAHKPMIAVINKLDLLAEDGTAAAALLDFVPASVPRL 399

Query: 342 LISSFTGEGLEELINKIKSILSN-KFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKD 399
            IS+  GEGLE L   I ++++             + RH   L  T+   E M     + 
Sbjct: 400 AISAREGEGLEALKQAIFTVVTGSDTPWDEEGCAPNLRHKKSLEATLIAAERMVDDLAQG 459

Query: 400 CG-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G  D+++ +++     LG I G    + + D+IFS+FC+GK
Sbjct: 460 MGSSDLLSIDMQECLDQLGDIIGITTTDDVFDVIFSEFCLGK 501


>gi|304383244|ref|ZP_07365715.1| tRNA modification GTPase TrmE [Prevotella marshii DSM 16973]
 gi|304335626|gb|EFM01885.1| tRNA modification GTPase TrmE [Prevotella marshii DSM 16973]
          Length = 460

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 135/460 (29%), Positives = 226/460 (49%), Gaps = 23/460 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP------FPRKASLRYFF 54
           + ++  TI A++T +   A+ +IR+SG +   + +                +     Y  
Sbjct: 4   ILNDHHTICAMATASG-GAMGVIRVSGDNAIAIVDKTFVPASKQSLQDAKAQSVLYGYIQ 62

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             D  ++D+ L+ VF +P S+TGED+ E   HG   ++  +LE L ++   R A PGEF+
Sbjct: 63  AEDRTVIDEVLVSVFRAPHSYTGEDTVEISCHGSAYIIKEVLERLIRL-GCRQALPGEFT 121

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NGK+DL +AE++ADLISS  +   +L++  + G  S       DKL  I S IE 
Sbjct: 122 QRAFLNGKMDLSQAEAVADLISSTNKATHQLALGQLRGHFSDELRALRDKLLKITSLIEL 181

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDFS+ +DV   + +E+      +K  I+      + G  +++G  + I+G +N GKS+
Sbjct: 182 ELDFSD-QDVTFANREELQQLAQHIKEKITRLAQSFQTGRALKSGVSVAIVGKTNVGKST 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L K++ AIV++I GTTRDV+   + + G   +  DTAGIRET+D +E  GI+RT+ 
Sbjct: 241 LLNRLLKEERAIVSEIHGTTRDVIEDTMQIRGVTFRFIDTAGIRETNDKIESLGIERTYR 300

Query: 295 EVENADLILLLKEINS-----KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------ 343
           ++  A +++ + + +      ++  +  K    I +  K D       +Y   I      
Sbjct: 301 KLSEAAIVIWMIDASPTFSEIQEMEARVKGKKLIVVANKMDEKEVVLADYPWTIQPAFLA 360

Query: 344 -SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCG 401
            S+     ++ L   I              I ++ RH   L      +            
Sbjct: 361 VSAKYNRNIDLLEATIYHAADIPEIHENDVIVTNARHYEALLHAQESIGRVIEGIVTGLS 420

Query: 402 LDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
            D+++E+LR     L +IT G +    +L+ IF  FCIGK
Sbjct: 421 GDLLSEDLRQCIHQLSEITGGTITTSDVLNSIFKDFCIGK 460


>gi|254461121|ref|ZP_05074537.1| tRNA modification GTPase TrmE [Rhodobacterales bacterium HTCC2083]
 gi|206677710|gb|EDZ42197.1| tRNA modification GTPase TrmE [Rhodobacteraceae bacterium HTCC2083]
          Length = 430

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 171/437 (39%), Positives = 247/437 (56%), Gaps = 10/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T    + +S+IR+SG       E  C+   P   KA+LR    L G ++D+ L
Sbjct: 2   DTIFALATAQGKAGVSVIRISGARARDAGEAFCEN-LPVSHKAALRNLTDLQGTLIDQAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F   +SFTGE   EFH+HG  A+V  ++E L  +  LRLA PGEF+RRA ENGK+DL
Sbjct: 61  VLTFEDRKSFTGEPVVEFHLHGSTAIVARMMELLGGVVGLRLAEPGEFTRRALENGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ ++  ++G+L      W   L    S +EA +DF++ EDV 
Sbjct: 121 AQVEGLADLIDAETESQRKQAVRVLAGDLGRTAEIWRSDLIRAASLLEATIDFAD-EDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EVL  +   +  I       K  E IR G+++ I+G  N GKS+L N++A +D A
Sbjct: 180 IDVTPEVLVLLERSERAIIKEAEGVKTAERIRAGFEVAIIGPPNVGKSTLLNSIAGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRDV+ + LDL G  V I DTAG+RET+D VEK GI R     E ADL + L
Sbjct: 240 ITSEYAGTTRDVIEVKLDLNGLPVTILDTAGLRETEDFVEKIGIDRALDRAEKADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           K    ++     ++ D   +G K+DL+   T      +S  TGEG++ L+  I   L ++
Sbjct: 300 KSTVEEQFPIEQRSGDIEMLG-KADLFVDRTRR---SVSGKTGEGVDHLVAAISKTLLDR 355

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCV 423
                  I + +RH   L  + +YL  A           D++AE++R A  +L  + G V
Sbjct: 356 --SASAGIATRERHRQALLSSQKYLSAAKEGLDFGPDYYDLVAEDMRSAIRALNSLIGHV 413

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LLD IFS FC+GK
Sbjct: 414 DVENLLDEIFSSFCLGK 430


>gi|190576473|ref|YP_001974318.1| tRNA modification GTPase TrmE [Stenotrophomonas maltophilia K279a]
 gi|190014395|emb|CAQ48043.1| putative tRNA modification GTPase [Stenotrophomonas maltophilia
           K279a]
          Length = 449

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 144/445 (32%), Positives = 232/445 (52%), Gaps = 13/445 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A+++      + ++RLSGP    +   +       PR A        DG ++D G+
Sbjct: 8   DTIVAIASAPGAGGVGLLRLSGPRAAAIANALGAPAL-RPRHAHYARLRDADGEVIDDGI 66

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP+P SFTGE+  E   HG   ++  ++     +   R A PGEFS RAF NGK+DL
Sbjct: 67  VLWFPAPNSFTGEEVVELQGHGSPVLLQQLVARCIAL-GARQARPGEFSERAFLNGKLDL 125

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI++      R +   + G  S      +++L  +R  +EA +DF++ E + 
Sbjct: 126 AQAEAIADLIAAGDNRAARAARRSLDGVFSRRIDAVVEQLVLLRIHVEAAIDFAD-EPLD 184

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                +V   +   ++D++      + G  +R+G   V++G  NAGKSSL NALA  + A
Sbjct: 185 TLGGAQVRRGLEQARSDLALLRRDAERGRRLRDGLHAVLIGPPNAGKSSLLNALAGSERA 244

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRD L   + L+G  + + DTAG+R+  D +E+EG++R  +E+E  DL L++
Sbjct: 245 IVTDIAGTTRDTLRETIRLDGLELTLVDTAGLRDGGDAIEREGMRRARVEIERTDLALIV 304

Query: 306 KEINSKKEISFPKNIDF------IFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELIN 356
            +                     ++I  KSDL        D     +S+ TG GL++L  
Sbjct: 305 LDARDPAAGEAALGEAVAAVPHKVYIHNKSDLLEALPALDDPDRVFVSAATGAGLDDLHA 364

Query: 357 KIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
           +++SI S    + +     +  RH+  + +   + + A        L++ AE LRLA  +
Sbjct: 365 RLRSIASAGAGEQVDGEFSARTRHVDAIERAQEHAQRADGELAHEHLELAAEELRLAHDA 424

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG+ITG +  + LL  IFS FCIGK
Sbjct: 425 LGEITGQMSADDLLGRIFSSFCIGK 449


>gi|282859538|ref|ZP_06268643.1| tRNA modification GTPase TrmE [Prevotella bivia JCVIHMP010]
 gi|282587766|gb|EFB92966.1| tRNA modification GTPase TrmE [Prevotella bivia JCVIHMP010]
          Length = 446

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 232/447 (51%), Gaps = 13/447 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILD 62
            +TI A++T +   A+ IIR++G         I  K     +  ++ Y       G+++D
Sbjct: 2   SDTICALATQSG-GALGIIRIAGSEAIPFVNSIFSKDITSAKANTIHYGNILDQSGKVID 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + ++ ++ +P S+TGED+ E   HG   ++  +L  L      R ANPGEF++RA+ NGK
Sbjct: 61  EVVVSLWRAPHSYTGEDAIEISCHGSSFILQEVLHALI-ASGCRQANPGEFTQRAYLNGK 119

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI+S       +++  + G  S        +L  I S +E +LDFSE E
Sbjct: 120 MDLSQAEAVADLIASSNRASYEMALSQLKGHFSDELTTLRKRLLKITSLLELELDFSEHE 179

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +++     E+++    +   + S     K G+ ++ G  + I+G +N GKS+L N L  +
Sbjct: 180 ELEFADRSELVDLTNEIDEKVLSLAQSFKTGQALKRGISVAIIGKTNVGKSTLLNQLLGE 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV++I GTTRDV+    D+ G   +  DTAGIRET D+VE+ GI+RT+ E++NA ++
Sbjct: 240 ERAIVSNIEGTTRDVIEDTTDINGITFRFIDTAGIRETTDVVEQLGIQRTYKELDNAQIV 299

Query: 303 LLLKEINSKKEI-----SFPKNIDFIFIGTKSDLYSTYTEEY--DHLISSFTGEGLEELI 355
           + + +I+  +E              + +  K D   T T+       IS+  G  + +L 
Sbjct: 300 MWILDIDPTQEEYNEIKERVGEKPIVVVRNKIDTIKTSTQSPLVTISISAKQGTNMHDLE 359

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRLASV 414
             +    +         I ++ RH   L++     L + S    +   D++AE+L+    
Sbjct: 360 QLLYQKANIPAFTENSVIVTNARHYDALTRAHEALLRVLSAFSMELSGDLVAEDLKDVIA 419

Query: 415 SLGKITG-CVDVEQLLDIIFSKFCIGK 440
            LG+ITG  +  ++ L+ IF  FCIGK
Sbjct: 420 ILGEITGTQISSQETLNNIFKHFCIGK 446


>gi|237724699|ref|ZP_04555180.1| tRNA modification GTPase mnmE [Bacteroides sp. D4]
 gi|229436894|gb|EEO46971.1| tRNA modification GTPase mnmE [Bacteroides dorei 5_1_36/D4]
          Length = 498

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 144/498 (28%), Positives = 235/498 (47%), Gaps = 63/498 (12%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL----- 56
            ++TI A++T     AI IIR+SGP   ++   I      K    +A     FG      
Sbjct: 3   NQDTICAIATAQG-GAIGIIRVSGPKAIEITSRIFTPATGKLLTERAPYTLTFGKICSPK 61

Query: 57  -------------------------------DGRILDKGLLIVFPSPESFTGEDSAEFHV 85
                                             ++D+ L+ +F +P S+TGEDS E   
Sbjct: 62  RKINNTLFQKTSEIPQEKSETLQKKESIIPSAEEVIDEVLISLFRAPHSYTGEDSTEIMC 121

Query: 86  HGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRL 145
           HG   ++  +++ L      R A PGE+++RAF NGK+DL +AE++ADLI+S +    RL
Sbjct: 122 HGSSYILQQVIQLLI-YNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSAATHRL 180

Query: 146 SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS 205
           +M  M G  S       ++L H  S +E +LDFS+ E+++  +  E+ +    ++  I+ 
Sbjct: 181 AMSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELEFANRDELSSLATHIEQVIAQ 240

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
                 +G  I+NG  + I+G +NAGKS+L NAL  ++ AIV+DI GTTRDV+   ++L+
Sbjct: 241 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 300

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISF 316
           G   +  DTAGIR+T+D +E  GI+RTF +++ A +IL + +    +          +  
Sbjct: 301 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWMIDSTDAQRRFEELKAEILPH 360

Query: 317 PKNIDFIFIGTKSDLYSTYTEE-----------YDHLISSFTGEGLEELINKIKSILSNK 365
            +    I +  KSDL     +E               IS+   E +  L  K+    +  
Sbjct: 361 CEGKKMIILFNKSDLLLAIQKEELSAIFADMKVEKLFISAKKRENITILEKKLVQAAALP 420

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASVSLGKIT--GC 422
                  I ++ RH   L++ +  +       +     D+++E+LR     L +I   G 
Sbjct: 421 EINQNDIIITNVRHYEALTRALDSIHRVQEGLQLGLSGDLVSEDLRQCIHELSEIVAEGG 480

Query: 423 VDVEQLLDIIFSKFCIGK 440
           +  E+ L  IF  FCIGK
Sbjct: 481 ITSEETLQNIFQNFCIGK 498


>gi|301753861|ref|XP_002912764.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
           isoform 2 [Ailuropoda melanoleuca]
          Length = 470

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 164/453 (36%), Positives = 240/453 (52%), Gaps = 36/453 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYF-FGLDGRILDKG 64
           T+FA+S+G     I++IR SGP+       +   +  P  R A LR       G  LD+ 
Sbjct: 35  TVFALSSGQGRCGIAVIRTSGPASGHALRSLTAPQDLPPARSACLRLLSHPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W   LT   + +EA +DFSE++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRAWAKTLTKALAHVEAYIDFSEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    + V + +  L+  +S+H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLERVDSQVRELELALSAHLRDARRGQRLRSGAHVVVAGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+   +SDTAG+RE    VE+EG++R        D I+ 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGVGPVEQEGVRRARESCNFLDTIVT 334

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKI 358
                + KE     +   + +  KSDL      +          +S  TGEGL+ L+  +
Sbjct: 335 PAGAGNPKE----NSQRLLLVLNKSDLLPRGGPDPSPNLPPHLLLSCLTGEGLDGLLEAL 390

Query: 359 KSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASL----------NEKDCGLDIIAE 407
           +  L+          + +  RH +HL   +  L                    G      
Sbjct: 391 RKELAEVCGDPSTGPLLTRARHQHHLQGCLDALGHYKQTKDLALAAEALRLARG------ 444

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                   LG+ITG    +++LDIIF  FC+GK
Sbjct: 445 -------HLGRITGGGGTDEILDIIFRDFCVGK 470


>gi|163814995|ref|ZP_02206382.1| hypothetical protein COPEUT_01148 [Coprococcus eutactus ATCC 27759]
 gi|158449678|gb|EDP26673.1| hypothetical protein COPEUT_01148 [Coprococcus eutactus ATCC 27759]
          Length = 459

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/460 (30%), Positives = 228/460 (49%), Gaps = 26/460 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-------KASLRYFFGL 56
           +++TI A++TG   + + IIR+SG    ++ + + + +    +        A+    +  
Sbjct: 3   KEDTIAAITTGISNAGVGIIRISGDRACEITDRVFQAENKKKKASNMKSYTAAFGKIYDG 62

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           D  ++D+ +L+V  +P ++T ED  E   HGGI V+  IL+ L      R A PGEF++R
Sbjct: 63  D-DLIDESILLVMKAPHTYTCEDVCELQCHGGIVVLRKILD-LVLRNGARAAEPGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF  G+ID+ +AES+  LI+++ +   R S++ + G L +      +K+ +  +FIE+ L
Sbjct: 121 AFLGGRIDMSQAESVMSLINAKNDFAVRTSVDQLQGRLKNTIVNMREKILYNVAFIESAL 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D  E   +  F  K  +     L   +   I+    G+I+  G   VI+G  NAGKSSL 
Sbjct: 181 DDPEHYSLDGFPDKLRMIIDDILI-QVEGLINTFDNGKILSEGINTVIVGKPNAGKSSLL 239

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N    +D AIVTD+ GTTRD L+  +++ G  + I DTAGIRETDD+VEK G+ +    V
Sbjct: 240 NMFVGEDRAIVTDMAGTTRDTLSEIVNVRGITLNIIDTAGIRETDDLVEKIGVDKAIKSV 299

Query: 297 ENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------- 343
           + ADL+L + +       N ++ I   ++ + I I  KSDL      +            
Sbjct: 300 DKADLVLYVVDGSVELDENDQRIIEKIRDKNVIVIINKSDLEIKIERDAICRYIDAEVIQ 359

Query: 344 -SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDC 400
            S+ TG+G EEL + +  +              ++ RH   L  T   L+      +   
Sbjct: 360 LSAMTGDGSEELYDMLNKMFFEGSLSYNDQLYITNARHKNELVCTKNALKKVIESIDMGM 419

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D  + ++  A   LG I G    + L D IF  FC+GK
Sbjct: 420 EEDFFSIDMMDAYEHLGLIIGETARDDLADKIFKDFCMGK 459


>gi|326793316|ref|YP_004311137.1| tRNA modification GTPase mnmE [Clostridium lentocellum DSM 5427]
 gi|326544080|gb|ADZ85939.1| tRNA modification GTPase mnmE [Clostridium lentocellum DSM 5427]
          Length = 460

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/459 (33%), Positives = 250/459 (54%), Gaps = 25/459 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL----DG 58
           ++TI A+ST      I IIR+SG    ++ + + +   KK   +  S    +G      G
Sbjct: 4   EDTIAAISTPIGVGGIGIIRVSGKETIEIVDKVFRAANKKSLKKVDSHTITYGHIVSDSG 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           ++LD+ L+++   P +FT ED  E + HGG   +N +L E+ K    R+A+ GEF++RAF
Sbjct: 64  KVLDEVLIMLMKGPRTFTREDIIEINCHGGPVPLNAVLMEVIKA-GARMADNGEFTKRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL + E++ D+I S+TE+    ++  + G LS    ++ D L  + + IE  +D+
Sbjct: 123 LNGRIDLAQVEAIMDIIESKTELSLSQAVGQLEGNLSKKIKEYQDTLIQVIARIEVSIDY 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +D +  ++ +   ++  L  ++   +     G++IR G K  I+G  N GKSSL NA
Sbjct: 183 PEYDDDEPITN-DFEAELKDLLEELRELLRTADTGKMIREGVKTAIVGRPNVGKSSLLNA 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDIPGTTRDV+   L+++G   ++ DTAGIRET+DIVEK G++R+   +E 
Sbjct: 242 LLEENKAIVTDIPGTTRDVVEAYLNIDGIPFQLLDTAGIRETEDIVEKIGVERSKSSIEE 301

Query: 299 ADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEY---------DHLI 343
           ADL+L+L +     ++  +EI    KN   I+I  K+DL +  T+E             +
Sbjct: 302 ADLVLMLVDSHVGLLDKDQEILEQVKNKHVIYIFNKTDLENNITQEMLETHFSNGEVIKV 361

Query: 344 SSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           S+    GL EL   +K  +      +   +  S++R    L   ++ LE      E    
Sbjct: 362 SAKEQSGLNELRQAMKHFVIKGSAAVHNEATISNQRQKQSLINAIKSLEKVIDAIELGLP 421

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D +A +L  A   LG I G    E++++ +FS+FC+GK
Sbjct: 422 EDCLAIDLHDAFGHLGMIVGESLKEEIINQLFSRFCLGK 460


>gi|194367813|ref|YP_002030423.1| tRNA modification GTPase TrmE [Stenotrophomonas maltophilia R551-3]
 gi|194350617|gb|ACF53740.1| tRNA modification GTPase TrmE [Stenotrophomonas maltophilia R551-3]
          Length = 449

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 145/445 (32%), Positives = 234/445 (52%), Gaps = 13/445 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A+++      + ++RLSGP    +   +       PR A        DG ++D G+
Sbjct: 8   DTIVAIASAPGAGGVGLLRLSGPRAAAIANALGAPAL-RPRHAHYARLRDADGEVIDDGI 66

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP+P SFTGE+  E   HG   ++  ++     +   R A PGEFS RAF NGK+DL
Sbjct: 67  VLWFPAPNSFTGEEVVELQGHGSPVLLQQLVARCIAL-GARQARPGEFSERAFLNGKLDL 125

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI++      R +   + G  S      +++L  +R  +EA +DF++ E + 
Sbjct: 126 AQAEAIADLIAAGDNRAARAARRSLDGVFSRRIDAVVEQLVLLRIHVEAAIDFAD-EPLD 184

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                +V   +   ++D++      + G  +R+G   V++G  NAGKSSL NALA  + A
Sbjct: 185 TLGGAQVRRGLKQARSDLALLRRDAERGRRLRDGLHAVLIGPPNAGKSSLLNALAGSERA 244

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDI GTTRD L   + L+G  + + DTAG+R+  D +E+EG++R  +E+E  DL L++
Sbjct: 245 IVTDIAGTTRDTLRETIRLDGLELTLVDTAGLRDGGDAIEREGMRRAHVEIERTDLALIV 304

Query: 306 KEINSKK------EISFPKNIDFIFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELIN 356
            +             +       ++I  KSDL +      D     +S+ TG GLE+L  
Sbjct: 305 LDARDPAAGEAALGDAVAAVPHKVYIHNKSDLLTALPALDDPDRVFVSAATGAGLEDLHA 364

Query: 357 KIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
           +++SI S    + +     +  RH+  + +   + + A        L++ AE LRLA  +
Sbjct: 365 RLRSIASAGAGEQVDGEFSARTRHVDAIERAQEHAQRADGELAHEHLELAAEELRLAHDA 424

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG+ITG +  + LL  IFS FCIGK
Sbjct: 425 LGEITGQMSADDLLGRIFSSFCIGK 449


>gi|197294186|ref|YP_001798727.1| tRNA modification GTPase TrmE [Candidatus Phytoplasma australiense]
 gi|171853513|emb|CAM11355.1| tRNA modification GTPase [Candidatus Phytoplasma australiense]
          Length = 453

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 144/452 (31%), Positives = 230/452 (50%), Gaps = 17/452 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLDGRIL 61
            +TI A++T      IS+IR+SG         I K K             +    D  IL
Sbjct: 3   FDTIAAITTPLGTGGISVIRVSGAQAITEINKIFKGKNLLEALTHTVHHGFILNQDETIL 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ VF +P SFTGE+  E   HGGI +   +LE +  +  LRLA PGEFS+RA+ NG
Sbjct: 63  DEVLVSVFKAPNSFTGENVVEISAHGGILITQMVLERILTLD-LRLAYPGEFSQRAYMNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           KIDL++AE++ DLI +  +   +++  G+    S L     +K+  + + IE ++D+ E 
Sbjct: 122 KIDLVQAEAIMDLIHATNQNAIKIANLGLHKHTSQLVSSLREKILTLIAQIEVNIDYPEY 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +D    +   +   +  L  ++ + +   +    +R+G K +I+G  N GKSSL NAL  
Sbjct: 182 DDTLLMTQSIIAPQVKSLIEELEAILFHSQKSRYLRDGIKTLIIGRPNVGKSSLLNALLN 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +  AIV+DI GTTRD +    + +G  + + DTAGI +T + +EK GI RT   + +A+L
Sbjct: 242 EPKAIVSDIAGTTRDFVDASFNCQGITLNLIDTAGIHQTTNPIEKIGISRTKKILSSAEL 301

Query: 302 ILLLKEI------NSKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEG 350
           ILL+ +       + +K +   +    I IG K+DL      +++  +    ISS    G
Sbjct: 302 ILLVLDQSEPLKEDDEKLLELTRLKPRIIIGNKADLSNEKTVTSFPIKNFISISSLKKTG 361

Query: 351 LEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAEN 408
           L+EL   I       +     F+  S+ RH+  +    + L+       D   +D+ + +
Sbjct: 362 LDELQKAILQKFQLEQISSKDFNSFSNVRHINQIQIAHQALKDFQTAFMDSMPIDVYSID 421

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L  A  +LGKI G      L+  +FSKFC+GK
Sbjct: 422 LTKAYQALGKIIGDNQENDLIKELFSKFCLGK 453


>gi|296533444|ref|ZP_06896027.1| tRNA modification GTPase TrmE [Roseomonas cervicalis ATCC 49957]
 gi|296266224|gb|EFH12266.1| tRNA modification GTPase TrmE [Roseomonas cervicalis ATCC 49957]
          Length = 439

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 171/442 (38%), Positives = 256/442 (57%), Gaps = 12/442 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDK 63
            +TIFA+++GA  +AIS++RLSGP    V   +  +  P PR+ASLR       G +LD+
Sbjct: 4   SDTIFALASGAGRAAISLLRLSGPDSALVLTRLAGR-LPRPRQASLRRLRHPETGELLDE 62

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            LL+ FP+P S+TGEDSAE H+HGG AV+ G+   L      R A PGEF+RRAF NG++
Sbjct: 63  ALLLWFPAPRSYTGEDSAELHLHGGRAVLEGVSAALL-ACGARPAEPGEFTRRAFLNGRL 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL  AE +ADLI +ET  QRR ++    G L++ Y  W ++LT + +  EA ++F+E+  
Sbjct: 122 DLTAAEGIADLIDAETAAQRRQALRQAGGALAARYAGWGERLTRLLAHQEASIEFAEDGI 181

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
             +    EV      L  +I++H++ G  GE +R G    I+G  NAGKSSL NALA ++
Sbjct: 182 PNDLD-DEVRQGAATLAAEIAAHLADGGRGERLREGLWAAIIGAPNAGKSSLLNALAGRE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV+   GTTRDV+ + LDL G  V ++DTAG+R+T D +E EG++R     E ADL++
Sbjct: 241 AAIVSARAGTTRDVVEVRLDLGGVPVLLADTAGLRDTPDEIEAEGVRRARRRAEEADLVI 300

Query: 304 LLKEINSKKEISFPK--NIDFIFIGTKSDLY---STYTEEYDHLISSFTGEGLEELINKI 358
            L   ++  +           + +  K DL    ++        +S+  G GL+ L + +
Sbjct: 301 ALFAADAAPDAETLALLRPGTVVVANKVDLAAPPASIGGIAPIALSARDGTGLDALRSLL 360

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           +    ++      +  +  RH   L + V +LE A    +    ++ AE+LR A  SLG+
Sbjct: 361 EREAQSRAGLSEEASLTRPRHRAALGEAVDWLEEAQ---RAPLPELAAESLRAALRSLGR 417

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           +TG V VEQ+LD++F  FCIGK
Sbjct: 418 LTGRVGVEQVLDVVFGDFCIGK 439


>gi|332525677|ref|ZP_08401826.1| tRNA modification GTPase TrmE [Rubrivivax benzoatilyticus JA2]
 gi|332109236|gb|EGJ10159.1| tRNA modification GTPase TrmE [Rubrivivax benzoatilyticus JA2]
          Length = 449

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/453 (34%), Positives = 246/453 (54%), Gaps = 22/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++ I AV+T A   A+ I+R SGP    + + +  +    PR A+L  F   DG +LD+G
Sbjct: 2   RDPIAAVATAAGRGAVGIVRASGPDLAPLVQALFGRAL-APRAATLLPFTAADGSVLDRG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVV----NGILEELAKMPNLRLANPGEFSRRAFEN 120
           L I FP+P S+TGED  E   HGG  ++      +LE       LRLA  GEF+ RAF N
Sbjct: 61  LAIHFPAPNSYTGEDVLELQAHGGPVLLQLLLARVLEA-GAGIGLRLARAGEFTERAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            KIDL +AE++ADLI + TE   R +   + G  S+       ++  +R+ +EA LDF E
Sbjct: 120 DKIDLAQAEAVADLIDASTEAAARSAARSLDGAFSAEIHTLAGRIVELRALVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++           +  ++  I + +++ + G ++R G ++VI G  N GKSSL NALA
Sbjct: 180 -EEIDFLEKARARERLDAIEAAIGAALARARQGALLREGMRVVIAGQPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENA 299
             ++AIVT IPGTTRD +   + +EG  + + DTAG+RE   D VE+ GI R++  +E A
Sbjct: 239 GAELAIVTPIPGTTRDRVAETIQIEGVPLHVVDTAGLREHAADEVERIGIGRSWEAIEGA 298

Query: 300 DLILLLKEINSKKE----------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
           D +L + ++  + +           +  +  D + +  K+D  +    +   ++S+  G 
Sbjct: 299 DAVLFVHDLTRRGDAAYEAAEAEIATRLQGADVLHVHNKADAAAQVAGD-GVVLSAKAGT 357

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EKDCGLDIIAE 407
           GLE L  ++      + +       +  RH+  L +T+ +L +A  +  ++D  LD++AE
Sbjct: 358 GLETLRRELLRRAGWQAQ-PDGVFIARARHVDALQRTLAHLHLAQAHAAQRDAALDLLAE 416

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LRL+  +LG+ITG    E LL  IF +FCIGK
Sbjct: 417 ELRLSHQALGEITGEFGTEDLLGEIFGRFCIGK 449


>gi|205422284|sp|A5UY19|MNME_ROSS1 RecName: Full=tRNA modification GTPase mnmE
          Length = 461

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/467 (31%), Positives = 233/467 (49%), Gaps = 33/467 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFGLD 57
           M ++ +TI A++T      I I+R+SG    ++ E I    +P    P +         +
Sbjct: 1   MLYD-DTIAAIATPPGEGGIGIVRISGRDALKILERIFVPVRPGRWKPYQMRYGRVVDQN 59

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ++D+ L +    P SFT ED+AE  VHGG  VV  +L++ A     R A PGEF+ RA
Sbjct: 60  GAVVDEALAVFMRGPRSFTAEDTAEISVHGGPLVVERVLQQ-ALAAGARAAAPGEFTMRA 118

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE+  D+I++ T     L+   + G LS    +  D L    ++  A +D
Sbjct: 119 FLNGRIDLAQAEATLDIITARTTTALALAEAQLGGWLSQELHRIRDLLMDPLAYCTALVD 178

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E+E       +++   +      + + ++  + G I R G +  ++G  NAGKSSL N
Sbjct: 179 FPEDE----VDPQDIETPLTAAVQALDALVASAQHGIIYRQGARAALIGRPNAGKSSLLN 234

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL + D AIVT IPGTTRD L     L G  V ++DTAGI E+DD VE+ G+ R+   V 
Sbjct: 235 ALLRVDRAIVTPIPGTTRDTLEETASLGGVPVVLTDTAGIVESDDPVERLGVARSRQAVR 294

Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYS-------TYTEEYDHLI- 343
            ADL LL+ ++      + ++ ++  +    I    K DL             EY+ +  
Sbjct: 295 LADLALLVVDVSLPVADDDREIVALTEEKRTILTLNKIDLIDADRSIIAARQREYEQIRG 354

Query: 344 ---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
                    S+ TG+GL+EL   +  +L          + ++ RH   L++   +   A 
Sbjct: 355 KAFDAMVTVSALTGQGLDELGATVARLLLGAPIAADGRLVTNARHRDALARAADHARDAL 414

Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              ++    D++A +L  A  ++G++TG    E LL  IFS+FCIGK
Sbjct: 415 TGFQQGVSPDLLAVDLTAAINAIGEVTGESVGEDLLHAIFSRFCIGK 461


>gi|227873162|ref|ZP_03991453.1| tRNA modification GTP-binding protein TrmE [Oribacterium sinus
           F0268]
 gi|227840993|gb|EEJ51332.1| tRNA modification GTP-binding protein TrmE [Oribacterium sinus
           F0268]
          Length = 456

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/455 (32%), Positives = 238/455 (52%), Gaps = 23/455 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGRI-L 61
           TI  ++T  + S I IIR+SG    ++   I + K   P        +RY F  DG   +
Sbjct: 4   TISGIATALVESGIGIIRISGSQAVEIAGKILRTKGGRPLDIRESHRIRYGFVFDGEKEI 63

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+  F +P+SFTGED+ E + HGGI ++  + +   K    R A PGEFS+RAF NG
Sbjct: 64  DEVLVSTFLAPKSFTGEDTVEINCHGGILLMQKVFQATLKA-GARPAEPGEFSKRAFLNG 122

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ADLI++++E   R S+  + G L     +   ++    +FIEA LD  E 
Sbjct: 123 RIDLSQAEAVADLIAAKSEDSIRSSLSLLQGSLKEKIKRMRSRILEDTAFIEAALDDPEH 182

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             +  FS ++    +  + +DI   +   + G +++ G + VI+G  NAGKSSL N L K
Sbjct: 183 ISLDGFS-EQCQGHVEEILSDIQELLKHQREGRLLKEGIQTVIVGKPNAGKSSLLNCLVK 241

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            D AIV++IPGTTRD +  D+ +    + + DTAGIRET+DIVE+ G+ R    +E AD 
Sbjct: 242 ADKAIVSNIPGTTRDTVEEDIRIGSLSLHLIDTAGIRETEDIVEEIGVNRAKEGIEKADC 301

Query: 302 ILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISSFT 347
           +LL+ + +       +K ++  +    + +  K D  S   +E            IS+  
Sbjct: 302 VLLVLDGSLPLEEEDRKILALLEGKKAVVLLNKMDKESILQKEELEKLSGFPVLPISAKE 361

Query: 348 GEGLEELINKIKSILSNKFKKLP-FSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDII 405
           G G+EEL  K++ +           +    +R +  L +    LE+           D +
Sbjct: 362 GRGMEELGQKLEELFYTGSLSFSTETYIHSERQIAALEEAKSALELVLEGIRLKLSEDFL 421

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +L  A  +LG+I G    E L++ IF+KFC+GK
Sbjct: 422 SIDLMGAYSALGRILGEDVSEDLINEIFAKFCMGK 456


>gi|315637643|ref|ZP_07892849.1| tRNA modification GTPase TrmE [Arcobacter butzleri JV22]
 gi|315478097|gb|EFU68824.1| tRNA modification GTPase TrmE [Arcobacter butzleri JV22]
          Length = 446

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 144/447 (32%), Positives = 246/447 (55%), Gaps = 13/447 (2%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           E +TI A++T     +ISI+R+SG    ++   I KK     R A+L   +     I+D+
Sbjct: 3   ENDTIVAIATANGIGSISIVRVSGAKALEIATKISKKNNFQARLATLSTIYDSKNEIIDE 62

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L+I F +P SFTGED  EF  HGG+A+ N I++E+      RLANPGEFS+RAF N KI
Sbjct: 63  ALVIYFKAPFSFTGEDVVEFQCHGGVAISNMIVDEVL-NAGARLANPGEFSKRAFFNNKI 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE+++ +I + +    +L    + GEL++   +  + L  + ++ E  +D++E ED
Sbjct: 122 DLTKAEAISKIIEARSADAVKLLARQLKGELTNFVDEIREDLLFMLAYTEVSIDYAE-ED 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +     +++ N +  +   +S+ +   +  E +  G+K+ I+G  N GKSSL N L   D
Sbjct: 181 LPTDIYEQIENKMQKISLKLSNTLEASRRREGMIEGFKVAIIGKPNVGKSSLLNKLLNFD 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AI++DI GTTRD +   + +  +++KI DTAGIR+  D++EK GI+++   +  AD+++
Sbjct: 241 RAIISDIAGTTRDTIEESVRIGTHIIKIVDTAGIRDASDVIEKIGIEKSIQAINEADIVI 300

Query: 304 LLKEIN------SKKEISFPK---NIDFIFIGTKSDLYSTYTEE-YDHLISSFTGEGLEE 353
            L + +       KK +   K   + + I +  KSDL + + +   D  I   T E +  
Sbjct: 301 ALFDNSKICDDEDKKILDLIKENSDKEVIVVLNKSDLQNQFDKNVLDSFIELSTKEDINP 360

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           LI +++ IL +       ++ S KR +  +  T+  + +A    K   L+  A  +  A 
Sbjct: 361 LIKELEEILDSNTFGDDITLVS-KRQVLAVENTLYNIGLAKEPLKSGELEFFAHFITQAL 419

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +  IT   D +++LD++F +FC+GK
Sbjct: 420 EDISSITRPYDNDEMLDVMFGEFCLGK 446


>gi|224372875|ref|YP_002607247.1| tRNA modification GTPase TrmE [Nautilia profundicola AmH]
 gi|223589292|gb|ACM93028.1| tRNA modification GTPase TrmE [Nautilia profundicola AmH]
          Length = 442

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/445 (31%), Positives = 240/445 (53%), Gaps = 14/445 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T     AISI+RLSG + +++ + + K K   PR A+L   +     ++D GL
Sbjct: 2   ETIAAIATPNGVGAISIVRLSGDNAYEIAKKLTK-KDLTPRVATLSKLYNNKNELIDIGL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F +P SFTGED  EF  HGG+ V   +LE L +    R A PGEF++RAF NGKID 
Sbjct: 61  VIYFKAPNSFTGEDIVEFQCHGGVIVSRLVLETLFE-YGARAAFPGEFTKRAFLNGKIDA 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++A LI + +    +L    + G+L     +  +KL  I ++ E  +D++E ED+ 
Sbjct: 120 SQAEAIAKLIETRSREGAKLLSRQLDGDLGEFVDEVREKLIEIMAYTEVFIDYAE-EDLP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                E+   +  +++ +   +   K  E + +GYKI I+G  N GKSS+ NAL  K  A
Sbjct: 179 ETLGYEIEERLAKIEHLLKHTLEVSKRREGMLSGYKIAIVGKPNVGKSSILNALLNKQRA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+DI GTTRD +  D+ +  +L++I DTAGIR   D +EK G++R+   ++ AD++L +
Sbjct: 239 IVSDIAGTTRDTIEEDIQIGSHLIRIIDTAGIRAAKDEIEKIGVERSKEAIKEADIVLAV 298

Query: 306 KEINSKKE-------ISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISSF--TGEGLEELI 355
            +     +       I      D I +  K D    +   +++++        E +  L+
Sbjct: 299 FDATEFTDEDEQILNIIKESGKDTIIVINKIDKGIDSDISKFENMPVVKISAKEDITPLV 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
            K+K IL +   +    + S  R +  + + ++ +E +    +   L++ +  ++ A  +
Sbjct: 359 EKLKEILDSYSGEDEHVLIS-ARQINAVEKALKSIEESKEFLQTGELELFSYQIQDAIRA 417

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           + +IT   + +++LD +F  FC+GK
Sbjct: 418 ISEITKPFEYDEMLDKMFGSFCVGK 442


>gi|320333416|ref|YP_004170127.1| tRNA modification GTPase mnmE [Deinococcus maricopensis DSM 21211]
 gi|319754705|gb|ADV66462.1| tRNA modification GTPase mnmE [Deinococcus maricopensis DSM 21211]
          Length = 438

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 132/443 (29%), Positives = 232/443 (52%), Gaps = 18/443 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF----GLDGRI 60
           ++TI A+ST      I ++R+SG    +V + +   ++   R    R+ +       G +
Sbjct: 7   EDTIAAISTAPGAGGIGVVRVSGEDALRVADAMFAGRRAPGRTPGGRFLYGRVLDASGDV 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L +VF +P S+TGED  EF  HG  AV+N +L    +    R A PGEF+ RA+ N
Sbjct: 67  VDESLALVFRAPHSYTGEDVVEFQTHGSPAVLNRVLARALEA-GARPAKPGEFTLRAYVN 125

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++  L++++T+  RR +  G++G L++       ++T + + ++A LD+ E
Sbjct: 126 GRLDLAQAEAVLSLVNAQTDTARRQATLGLTGALANRVALIQSRVTRVLAAVQAMLDYPE 185

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E V     +  L        D+ + I+  + G++   G ++ ++G  NAGKSSL NAL 
Sbjct: 186 -EGVPEEDRETPLALAA---QDLEALIASSRAGQLATRGARLALIGRPNAGKSSLLNALL 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + +IVT + GTTRD L   L+L G  + + DTAG+R+TDD +E  G+++       AD
Sbjct: 242 GYERSIVTPVAGTTRDYLEAQLELAGVPITLVDTAGLRDTDDAIEAAGVRQAVALAGGAD 301

Query: 301 LILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
           LIL L++ +S +E   +  P +     + TK+DL   + +     +S+ TG GL  L   
Sbjct: 302 LILHLEDGSSPREDAALDTPADRTLH-VRTKADLPPAWADAATLPVSAVTGAGLPALREA 360

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           I++ L     +    + + +R      + + +++ A         ++    L  A  +L 
Sbjct: 361 IRARLLGDAARGEAWLTT-ERQGDAARRALGHVQAARA----LPDELATLELEEALRALN 415

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
            +TG    E ++D +F  FC+GK
Sbjct: 416 DLTGRDVTEDVVDAVFRNFCVGK 438


>gi|291457893|ref|ZP_06597283.1| tRNA modification GTPase TrmE [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291419437|gb|EFE93156.1| tRNA modification GTPase TrmE [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 459

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/462 (32%), Positives = 234/462 (50%), Gaps = 25/462 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------PFPRKASLRYFF 54
           M   ++TI A++T A  + I IIR+SG     V   + + K         P +    + +
Sbjct: 1   MERAEDTICALATAAAEAGIGIIRISGEHALSVAGSLLRTKSGERLDLSKPNRVRYAFVY 60

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             +   +D+ L+  F +P S+TGEDS E + HGG+ ++  +L    +    R A PGEF+
Sbjct: 61  DNE-EAVDEVLVTSFLAPHSYTGEDSVEINCHGGVLLLQKVLSLCVRS-GARPAEPGEFT 118

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL EAE+++DLI + +E   R  +  + G LS    +    L    ++IEA
Sbjct: 119 KRAFLNGRLDLSEAEAVSDLIHARSEDAIRAGLSQLRGSLSRKIREMRKILLEDDAYIEA 178

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LD  E   ++ FS K  L+    L  D  +  +    G ++R G + VI+G  NAGKSS
Sbjct: 179 ALDDPEHISLEGFSEKLRLH-AESLLRDTEALEASFSSGRLLREGIRTVIVGKPNAGKSS 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL  ++ AIVT+I GTTRD L  +L L+   ++  DTAGIRET+D VE+ G++R   
Sbjct: 238 LLNALLGEERAIVTEIEGTTRDTLEEELSLKDLNLRAIDTAGIRETEDPVERIGVERAKK 297

Query: 295 EVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YD 340
             E+ADLI+ + +       + ++ + F      + +  KSDL +  +EE          
Sbjct: 298 AAEDADLIIYVVDASRPLDSSDEEILRFLPGKKALLLLNKSDLRTIISEEEMKKRSGCPV 357

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLP-FSIPSHKRHLYHLSQTVRYL-EMASLNEK 398
             IS+ T EG+  L  KI+ +      +     I   +R    L    + L E+    E 
Sbjct: 358 LSISARTEEGISMLSEKIREMFFGGELRWNQELIICSERQRKLLQNAGQALRELCRSIEI 417

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D    ++  A   LG+I G    E L+D IFSKFC+GK
Sbjct: 418 GMPEDFYTIDIMRAYEELGQILGERVSEDLIDEIFSKFCMGK 459


>gi|148240676|ref|YP_001226063.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 7803]
 gi|205829179|sp|A5GPA1|MNME_SYNPW RecName: Full=tRNA modification GTPase mnmE
 gi|147849215|emb|CAK24766.1| tRNA modification GTPase [Synechococcus sp. WH 7803]
          Length = 460

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/444 (31%), Positives = 224/444 (50%), Gaps = 21/444 (4%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASL--RYFFGLDGRILDKGLLIVFP 70
                I++IRLSGP      + + +   ++ +     L      G  G  +D+ L+++  
Sbjct: 20  PGQGGIAVIRLSGPQAQAAVQSVTRIPGQQSWESHRVLYGHVLAGESGERIDEVLVLLML 79

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
           +P SFTGED  E H HGG+  V  +L  +   P +R A PGEFS+RA  NG++DL  AE+
Sbjct: 80  APRSFTGEDVVEIHCHGGVIAVQRVLARVLDQPGVRRALPGEFSQRAVLNGRLDLTRAEA 139

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           ++DL+++ ++    L+M G+ G +        D+L    S +EA +DF E  D+      
Sbjct: 140 ISDLVAARSQRAAELAMAGVDGGIQKRITALRDRLLDQLSELEARVDFEE--DLPALDGA 197

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
            +L ++  ++  +   +  G++G  +R G ++ ++G  N GKSSL N L++++ AIVTD+
Sbjct: 198 ALLEELQRVRGALQQLVKDGQVGAALRQGLRVALVGRPNVGKSSLLNRLSRRERAIVTDL 257

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-- 308
           PGTTRD+L  ++ LEG  + + DTAGIR T D VE+ GI R+   + +ADL+LLL ++  
Sbjct: 258 PGTTRDLLESEIVLEGVPITLLDTAGIRATSDAVERLGIARSHDALASADLVLLLFDLSV 317

Query: 309 -----NSKKEISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELINK 357
                +       P  +  + +G K D+        T     D  +S+ TG G  EL+  
Sbjct: 318 GWTPDDEALRQRIPAAVPHLLVGNKVDVAVSDARAGTSGSAADIRLSASTGAGEAELVQA 377

Query: 358 IKSILSNKFKKLPFSIPSHKRH-LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           +              +  ++R               A +       D    +LR A  SL
Sbjct: 378 VLER-CGALADGSLLLSLNQRQGDLAQQAADALARSAQVAADGLPWDFWTIDLRQAIHSL 436

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G+ITG    E +LD IFS+FCIGK
Sbjct: 437 GEITGEELTESVLDRIFSRFCIGK 460


>gi|205829164|sp|Q6APY7|MNME_DESPS RecName: Full=tRNA modification GTPase mnmE
          Length = 467

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 223/462 (48%), Gaps = 26/462 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGR 59
           + ETI A+ST      I +IR+SG     + + I +         S + ++G     DG 
Sbjct: 7   DNETIAAISTPMGTGGIGVIRISGKESLTILQTIFRPHNDSCSYRSHQMYYGQIVAADGH 66

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD+ L++   +P+++T ED  E H HG   V+  +LE L       LA PGEF++RAF 
Sbjct: 67  QLDEVLVVYMRAPKTYTCEDIVEIHCHGNFLVLQNVLE-LVIEKGASLAEPGEFTKRAFF 125

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D++S++T     ++ E ++G L        + L H+R+  E  +DF 
Sbjct: 126 NGRIDLTKAEAVIDVLSAKTRKGVDVAQEQLAGSLYRRIEPIRNALVHMRALFEVAIDFP 185

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           ++        +  L     +   +   ++    G I R G  +VI G  N GKSSL NA+
Sbjct: 186 DQSHDIVDYEQIDLQLKTEVIAPVKELLAGVDRGRIYRQGISMVIAGRPNVGKSSLLNAV 245

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            +++ A+VT I GTTRD +   +D+ G  V+I DTAGIR     VE  GI+R    + +A
Sbjct: 246 LQEERALVTSIAGTTRDSIEEMVDILGMPVRIVDTAGIRRQAGEVEALGIQRAKDLINSA 305

Query: 300 DLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYST------------YTEEYDH 341
           DL+L + + + + + S  +      +   I +  K DL +                    
Sbjct: 306 DLVLFMVDGSRQLDQSDLELYEDIAHKPMIAVINKLDLLAEDGTAAAALLDFVPASVPRL 365

Query: 342 LISSFTGEGLEELINKIKSILSN-KFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKD 399
            IS+  GEGLE L   I ++++             + RH   L  T+   E M     + 
Sbjct: 366 AISAREGEGLEALKQAIFTVVTGSDTPWDEEGCAPNLRHKKSLEATLIAAERMVDDLAQG 425

Query: 400 CG-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G  D+++ +++     LG I G    + + D+IFS+FC+GK
Sbjct: 426 MGSSDLLSIDMQECLDQLGDIIGITTTDDVFDVIFSEFCLGK 467


>gi|254525316|ref|ZP_05137371.1| tRNA modification GTPase TrmE [Stenotrophomonas sp. SKA14]
 gi|219722907|gb|EED41432.1| tRNA modification GTPase TrmE [Stenotrophomonas sp. SKA14]
          Length = 449

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/447 (31%), Positives = 232/447 (51%), Gaps = 13/447 (2%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A+++      + ++RLSGP    +   +       PR A        D  ++D 
Sbjct: 6   HTDTIVAIASAPGAGGVGLLRLSGPRAAAIANALGAPAL-RPRHAHYARLRDADDEVIDD 64

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+++ FP+P SFTGE+  E   HG   ++  ++     +   R A PGEFS RAF NGK+
Sbjct: 65  GIVLWFPAPNSFTGEEVVELQGHGSPVLLQQLVARCIAL-GARQARPGEFSERAFLNGKL 123

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI++      R +   + G  S      +++L  +R  +EA +DF++ E 
Sbjct: 124 DLAQAEAIADLIAAGDNRAARAARRSLDGVFSRRIEAVLEQLVLLRIHVEAAIDFAD-EP 182

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +      +V   +   ++D++      + G  +R+G   V++G  NAGKSSL NALA  +
Sbjct: 183 LDTLGGAQVRRGLEQTRSDLALLRRDAERGRRLRDGLHAVLIGPPNAGKSSLLNALAGSE 242

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRD L   + L+G  + + DTAG+R+  D +E+EG++R  +E+E  DL L
Sbjct: 243 RAIVTDIAGTTRDTLRETIRLDGLELTLVDTAGLRDGGDAIEREGMRRAHVEIERTDLAL 302

Query: 304 LLKEINSKKEISFPKNIDFI------FIGTKSDLYSTYT---EEYDHLISSFTGEGLEEL 354
           ++ +               +      +I  KSDL +      +     +S+ TG GL++L
Sbjct: 303 IVLDARDPAAGEAALGDAVMAVPHKVYIHNKSDLLTALPTLDDPDRVFVSAATGAGLDDL 362

Query: 355 INKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
             +++SI S    + +     +  RH+  + +   + + A        L++ AE LRLA 
Sbjct: 363 HARLRSIASAGAGEQVDGEFSARTRHVDAIERAQEHAQRADGELAHEHLELAAEELRLAH 422

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LG+ITG +  + LL  IFS FCIGK
Sbjct: 423 DALGEITGQMSADDLLGRIFSSFCIGK 449


>gi|157737854|ref|YP_001490538.1| tRNA modification GTPase TrmE [Arcobacter butzleri RM4018]
 gi|205829054|sp|A8EV95|MNME_ARCB4 RecName: Full=tRNA modification GTPase mnmE
 gi|157699708|gb|ABV67868.1| tRNA modification GTPase [Arcobacter butzleri RM4018]
          Length = 446

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 145/447 (32%), Positives = 245/447 (54%), Gaps = 13/447 (2%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           E +TI A++T     +ISI+R+SG    ++   I KK     R A+L   +     I+D+
Sbjct: 3   ENDTIVAIATANGIGSISIVRVSGAKALEIATKISKKNNFKARLATLSTIYDSKNEIIDE 62

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L+I F SP SFTGED  EF  HGG+A+ N I++E+      RLANPGEFS+RAF N KI
Sbjct: 63  ALVIYFKSPFSFTGEDVVEFQCHGGVAISNMIVDEVL-NAGARLANPGEFSKRAFFNNKI 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE+++ +I + +    +L    + GEL++   +  + L  + ++ E  +D++E ED
Sbjct: 122 DLTKAEAISKIIEARSADAVKLLARQLKGELTNFVDEIREDLLFMLAYTEVSIDYAE-ED 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +     +++ N +  +   +S+ +   +  E +  G+K+ I+G  N GKSSL N L   D
Sbjct: 181 LPTDIYEQIENKMQKISLKLSNTLEASRRREGMIEGFKVAIIGKPNVGKSSLLNKLLNFD 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AI++DI GTTRD +   + +  +++KI DTAGIR+  D++EK GI+++   +  AD+++
Sbjct: 241 RAIISDIAGTTRDTIEESVRIGTHIIKIVDTAGIRDASDVIEKIGIEKSIQAINEADIVI 300

Query: 304 LLKEIN------SKKEISFPK---NIDFIFIGTKSDLYSTYTEE-YDHLISSFTGEGLEE 353
            L + +       KK +   K   +   I +  KSDL + + +   D  I   T E +  
Sbjct: 301 ALFDNSKICDDEDKKILDLIKENSDKKVIVVLNKSDLQNQFDKNVLDSFIELSTKEDINP 360

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           LI +++ IL +       ++ S KR +  +  T+  + +A    K   L+  A  +  A 
Sbjct: 361 LIKELELILDSNTFGDDITLVS-KRQVLAVENTLYNIGLAKEPLKSGELEFFAHFITQAL 419

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +  IT   D +++LD++F +FC+GK
Sbjct: 420 EDISSITRPYDNDEMLDVMFGEFCLGK 446


>gi|326335516|ref|ZP_08201703.1| thiophene and furan oxidation protein ThdF [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692282|gb|EGD34234.1| thiophene and furan oxidation protein ThdF [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 475

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 137/472 (29%), Positives = 233/472 (49%), Gaps = 34/472 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL-- 56
           + +  +TI A++T     AI+IIRLSG     + + + K    K      S     G   
Sbjct: 6   IPYTNDTIVALATATGVGAIAIIRLSGKEAIALADKVFKTLSGKTLSEAPSHTVHLGTIK 65

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            + +++D+ L  +F   +S+TGE   EF  HG   ++  +++ L      RLA  GEF++
Sbjct: 66  NENQVIDECLATIFKGKKSYTGEPVVEFSCHGSPYIIQEVIK-LCLTNGARLAQAGEFTK 124

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+ L +AE++ADLI+S+++   +++++ M G  +S       +L +  S IE +
Sbjct: 125 RAFLNRKLALNQAEAVADLIASDSKASHQVALQQMRGGFTSKIEGLRQELLNFASLIELE 184

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDFSE EDV     +++   +  ++  +   +     G  I+NG  + I+G  NAGKS+L
Sbjct: 185 LDFSE-EDVAFADREQLEQLLQRIRTILQRLVQSFSAGNAIKNGIPVAIVGKPNAGKSTL 243

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  ++ AIV+DI GTTRD +   L ++G   +  DTAGIR+T D +E  G+++   +
Sbjct: 244 LNTLLNEERAIVSDIAGTTRDTIEETLHIDGITFRFIDTAGIRDTQDKIEAIGVEKAKEK 303

Query: 296 VENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------ 341
           ++ A ++L L         E+    + ++ K +  + +  K+D       ++D       
Sbjct: 304 IKKAQIVLYLYNEKENTTDEVVQFVQENYRKGLKILLLHNKTDSEYIGLSDFDEEIEEKL 363

Query: 342 ------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                        IS+     +E L   + S           +I ++ RHL  L QT+  
Sbjct: 364 NSKERKYGYGQLRISAKEKINIEALKEILSSYAKELTTTESATIITNIRHLEALQQTLVA 423

Query: 390 LEMASLNEK-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L+            D++A ++R     LG ITG V  +++L  IFS+FCIGK
Sbjct: 424 LDRVEEGLATQLSGDLLAIDIREMLYHLGSITGAVSNDEVLGNIFSRFCIGK 475


>gi|291319989|ref|YP_003515247.1| tRNA modification GTPase TrmE [Mycoplasma agalactiae]
 gi|290752318|emb|CBH40289.1| TRNA modification GTPase (TrmE) [Mycoplasma agalactiae]
          Length = 445

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/448 (34%), Positives = 237/448 (52%), Gaps = 17/448 (3%)

Query: 5   KETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--DGRIL 61
            +TI A+S+G  +  AISIIR+SGP    V + I   K       +            ++
Sbjct: 3   NDTITAISSGGKINQAISIIRVSGPDSVNVVKKIFTGKVGTSHTITFGNIIDNLNGNEVI 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L + F    +F GED+ E + HGG+ + N ILE L      RLA PGEFSRR+F NG
Sbjct: 63  DEVLCMWFLGTNNFVGEDTVEINCHGGVVITNRILE-LLLSNGARLAEPGEFSRRSFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL++AE++ DLI + T  Q +L+++   G+ S    +  D+L ++   +E  +D+ E 
Sbjct: 122 KMDLIKAEAINDLIHASTVSQTKLAIKKFDGKTSMYIQELKDELAYLIGEMEVSIDYPEY 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D  N  + ++++ +  ++N IS  I   +   +I  G KI ILG  N GKSS+ NA+ +
Sbjct: 182 -DFDNPFTDKLMSRLESIRNKISKTIELSQTSRMIFEGIKIAILGKPNVGKSSILNAILE 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVTDI GTTRD++      +G L K  DTAGIR+T + +EK GI ++F ++E AD+
Sbjct: 241 EDKAIVTDIAGTTRDIVEAMWQYKGLLFKFIDTAGIRDTKEKIEKIGIDKSFEQIEKADV 300

Query: 302 ILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           +L + + +          K  +   N  ++ +  K DL  T  +E+  L  S     L+ 
Sbjct: 301 VLHIYDPSQNDNEFDSQIKNKAHSLNKIYVPVINKKDLLETTNDEF--LYVSAKLNDLDP 358

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLA 412
           L  K+ S+  N          ++ R L  + Q  + LE A  + K     D++  +LR A
Sbjct: 359 LKEKLVSVFKNIDLNNDQ-YVNNSRQLALIKQAHKSLEDAIKSIKLGYDPDVVIIDLRQA 417

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              L  ITG  D E LLD +F  FC+GK
Sbjct: 418 WSHLTDITGRADNELLLDEMFKNFCLGK 445


>gi|307721584|ref|YP_003892724.1| tRNA modification GTPase trmE [Sulfurimonas autotrophica DSM 16294]
 gi|306979677|gb|ADN09712.1| tRNA modification GTPase trmE [Sulfurimonas autotrophica DSM 16294]
          Length = 445

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 231/447 (51%), Gaps = 14/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            ETI A++T     +I+IIRLSG     + + +  K+   PR A+L   +  +  ++D+ 
Sbjct: 2   NETIAAIATANGIGSIAIIRLSGEHALDIAKKLTCKENFTPRHATLTNIYNDNNELIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F  P SFT ED  E   HGG  V   IL    K    RLAN GEFS+RAF NG+ID
Sbjct: 62  IVIYFKGPYSFTAEDVVEIQCHGGFIVAQTILRATLKA-GARLANAGEFSKRAFFNGRID 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE++A LI +++E   ++    M G L     Q  D + HI ++ E  +D++E ED+
Sbjct: 121 LSEAEAIAQLIEAKSEDAAKILASQMKGSLKEFIEQVRDDIIHILAYSEVSIDYAE-EDL 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                 ++   +  L   +   +   K  E +  G+++ I+G  N GKSSL N L   + 
Sbjct: 180 PEDLVAQIQAKLDELYTLLEKTLITSKSREGLMQGFRVAIIGKPNVGKSSLLNTLLNYNR 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+DI GTTRD +   + +  +L++I DTAGIRE++D +E+ GI+R+   +  +D+++ 
Sbjct: 240 AIVSDIAGTTRDTIEEQVKIGTHLIRIVDTAGIRESNDEIERIGIQRSLEAINESDIVIA 299

Query: 305 LKEINSKKEISFPK----------NIDFIFIGTKSDLYSTY-TEEYDHLISSFTGEGLEE 353
           L + + K +    +            + + +  K DL   +  E     +   +   +  
Sbjct: 300 LFDGSRKADEEDEQILELIKQNRDKKEMLVVKNKIDLEQKFHLENLAFDLELNSRNDVTA 359

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L+ K+++I+          + S +R +  +  T++ ++ A    +D  L+I + +L  A 
Sbjct: 360 LVKKLEAIMDASNVSDEIMLIS-QRQISAVEATIQNIKEAFEPLQDQELEIFSFHLNEAV 418

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +  IT   + +++LD +F  FC+GK
Sbjct: 419 KEMASITRPFENDEMLDKMFGSFCLGK 445


>gi|83815382|ref|YP_444209.1| tRNA modification GTPase TrmE [Salinibacter ruber DSM 13855]
 gi|123529876|sp|Q2S6H2|MNME_SALRD RecName: Full=tRNA modification GTPase mnmE
 gi|83756776|gb|ABC44889.1| tRNA modification GTPase TrmE [Salinibacter ruber DSM 13855]
          Length = 461

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/462 (30%), Positives = 237/462 (51%), Gaps = 26/462 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK---KKPFPRKASLRYFFGLDGR 59
            + +TI A++T    +A++++R SGP+  ++ +   +           A +       G 
Sbjct: 2   SQSDTIAAIATARGRAALAVVRTSGPAAIEIVDRCFRGDALTDADSHTAHVGVLTDEAGT 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  VF +P S TGE   E   HGG       L+ L      R+A PGEF+ RAF 
Sbjct: 62  DIDQVVATVFRAPNSATGEHVVEVSCHGGDLAPKMALQSLL-DHGARMAEPGEFTERAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI + +    + S+  + G  S L G   ++L ++ S +E ++DFS
Sbjct: 121 NGKMDLAQAEAVADLIDATSTKAHQASLTHLKGRYSDLLGDLREELLNLCSLVELEIDFS 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + EDV+    + + + +   +  +   +     GE +++G ++VI G  NAGKS+L NAL
Sbjct: 181 D-EDVEFADRERLEDLLDETEEILGDLLDTYPTGEKLKDGVQVVIGGRPNAGKSTLLNAL 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              D AIV++ PGTTRD +  + ++EG L +  DTAG+R+T D +E EG++R    +E A
Sbjct: 240 VGHDRAIVSETPGTTRDEIEAEAEIEGVLFRFVDTAGLRDTADEIEAEGVRRATESIEEA 299

Query: 300 DLILLLKEIN---SKKEISFPK-------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
           D++  L ++      +EI+F +       ++  + IG K+D            ++S    
Sbjct: 300 DVLFYLYDLTVGLDSQEIAFLQDLADDGSDVQPVVIGNKADRAPDLPVATLDGLTSLKLS 359

Query: 350 GLEE---------LINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMA-SLNEK 398
            LE          L++ +   ++    +   S +  ++RH  HL   +  ++ A    + 
Sbjct: 360 ALEAREDADEVQPLLDHLTDTVAEHLSRAEASPVVMNQRHRQHLRDALDAVQQAREALDA 419

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D++  +LR A   LG ITG +  E +LD IFS+FCIGK
Sbjct: 420 GVSGDMLTLDLRAALQELGAITGEITNEDVLDQIFSRFCIGK 461


>gi|170106165|ref|XP_001884294.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164640640|gb|EDR04904.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 527

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/470 (33%), Positives = 248/470 (52%), Gaps = 41/470 (8%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKK-----KPFP-RKASLRYF 53
           ++ TI+A+ST    + +++IR+SGP    V   +    CK+K      P P +    R  
Sbjct: 66  QRRTIYALSTPPGKAGVAVIRVSGPEALDVWRRVIQPTCKRKALADYIPTPWKMERCRVV 125

Query: 54  FGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
                 +LD GL + F +P SFT ED  E H+H G A+V  +L  LA +P+ R A PGEF
Sbjct: 126 HPETQEMLDDGLAVYFRAPHSFTTEDVVELHIHSGRAIVASVLGSLALLPSCRPAEPGEF 185

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF  G++DL + E L DLI +ET+ QRR++++     +  ++ +    + +  + IE
Sbjct: 186 TRRAFLGGRLDLTQVEGLKDLIDAETDAQRRIALQAA--GVGEIFDELRKGIINCLAQIE 243

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A +DF E ED++     E       L + +  +++  + GE++R+G ++ I G  NAGKS
Sbjct: 244 ALIDFGEGEDIEEGVYDEARIQGKVLLDTMKLYLNDHRRGELMRSGLRLAIFGPPNAGKS 303

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N L K   AIVT IPGTTRD+L + LD+ G  V ++DTAG+R T+D+VE  G++R  
Sbjct: 304 SLLNFLGKLQAAIVTSIPGTTRDILELSLDIGGLPVIVADTAGLRHTEDVVESIGVERAR 363

Query: 294 LEVENADLILLLKEINS--------KKEISFPKN---IDFIFIGTKSDLYSTYTEEYD-- 340
             V+  D+ L +  +          K+ I   ++    +  F+  KSDL    +      
Sbjct: 364 NAVKATDIALCVLSLPETLDSQSGMKESIHSLRDLISPETFFLFNKSDLLGQSSRGLPDP 423

Query: 341 ----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                        +S +G+        + S+ ++ +      + +  RH  HL    ++L
Sbjct: 424 EDLRDNLLGNQHHNSKSGQ-----RAWVASLSTDNWTPSQTPLITRARHRTHLESACQFL 478

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E A L      + + AE LR A+V++GK+TG +DVE +LD +F  FCIGK
Sbjct: 479 E-AFLELPPEDVVLAAEELRYAAVAVGKVTGHIDVEDILDAVFRDFCIGK 527


>gi|296273895|ref|YP_003656526.1| tRNA modification GTPase TrmE [Arcobacter nitrofigilis DSM 7299]
 gi|296098069|gb|ADG94019.1| tRNA modification GTPase TrmE [Arcobacter nitrofigilis DSM 7299]
          Length = 447

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/447 (34%), Positives = 246/447 (55%), Gaps = 14/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISIIRLSG     +   + K+    PR A+L   +  D  I+D+ 
Sbjct: 4   FDTIAAIATANGIGSISIIRLSGKDALPLALTLSKRTNLNPRLATLSSIYNSDNEIIDEA 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LLI F +P SFTGED  EF  HGGIA+ N IL EL K+   RLANPGEFS+RAF N KID
Sbjct: 64  LLIYFKNPNSFTGEDIVEFQCHGGIAISNIILNELIKL-GARLANPGEFSKRAFLNNKID 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++A LI + +E   +L    + GEL++      + L  + ++ E  +D++E +D+
Sbjct: 123 LSKAEAIAKLIEARSEDAVKLLARQLKGELTNFVNDIREDLLFMLAYTEVSIDYAE-DDL 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +   +++   I  +   +S  +   K  E +  G+K+ I+G  N GKSSL N L   D 
Sbjct: 182 PSDIFEQIEKKIEKIVVKLSETLESSKRREGLIEGFKVAIIGKPNVGKSSLLNKLLNFDR 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI++DI GTTRD +   + +  +++KI DTAGIRE  D +E+ GI+++   V  AD+I+ 
Sbjct: 242 AIISDIAGTTRDTIEESVKIGTHIIKIVDTAGIREASDTIERIGIEKSLSAVNEADIIIS 301

Query: 305 LKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLEE 353
           L + +   +         +   +N + I +  K DL S +  T+  D  I   T   +  
Sbjct: 302 LFDNSKVCDDEDKKILNILDEIENKEKIIVLNKIDLESKFDKTQLKDEYIELSTKNSIST 361

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L+ KI++IL N       ++ S KR +  + QT+ +++ A        L+  A N+  A 
Sbjct: 362 LVKKIETILDNNSHDDDMTLIS-KRQVEAVEQTLYHVQEAKTPLMTGELEFFAHNIHEAI 420

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++  IT   + +Q+LD++F  FC+GK
Sbjct: 421 ENISLITRPYENDQMLDVMFGAFCLGK 447


>gi|294505869|ref|YP_003569927.1| tRNA modification GTPase trmE [Salinibacter ruber M8]
 gi|294342197|emb|CBH22975.1| tRNA modification GTPase trmE [Salinibacter ruber M8]
          Length = 461

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 138/462 (29%), Positives = 236/462 (51%), Gaps = 26/462 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK---KKPFPRKASLRYFFGLDGR 59
            + +TI A++T    +A++++R SGP+  ++ +   +           A +       G 
Sbjct: 2   SQSDTIAAIATARGRAALAVVRTSGPAAIEIVDRCFRGDALTDADSHTAHVGVLTDEAGT 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  VF +P S TGE   E   HGG       L+ L      R+A PGEF+ RAF 
Sbjct: 62  DIDQVVATVFRAPNSATGEHVVEVSCHGGDLAPKMALQSLL-DHGARMAEPGEFTERAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI + +    + S+  + G  S L G   ++L ++ S +E ++DFS
Sbjct: 121 NGKMDLAQAEAVADLIDATSTKAHQASLTHLKGRYSDLLGDLREELLNLCSLVELEIDFS 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + EDV+    + + + +   +  +   +     GE +++G ++VI G  NAGKS+L NAL
Sbjct: 181 D-EDVEFADRERLEDLLDETEEILGDLLDTYPTGEKLKDGVQVVIGGRPNAGKSTLLNAL 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              D AIV++ PGTTRD +  + ++EG L +  DTAG+R+T D +E EG++R    +E A
Sbjct: 240 VGHDRAIVSETPGTTRDEIEAEAEIEGVLFRFVDTAGLRDTADEIEAEGVRRATESIEEA 299

Query: 300 DLILLLKEIN---SKKEISFPKNIDFI-------FIGTKSDLYSTYTEEYDHLISSFTGE 349
           D++  L ++      +EI+F +++           IG K+D            ++S    
Sbjct: 300 DVLFYLYDLTVGLDSQEIAFLQDLAADGSDVQPVVIGNKADRAPDLPVATLDGLTSLKLS 359

Query: 350 GLEE---------LINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMA-SLNEK 398
            L+          L++ +   ++    +   S +  ++RH  HL   +  ++ A    + 
Sbjct: 360 ALKAREDADEVQPLLDHLTDTVAEHLSRAEASPVVMNQRHRQHLRDALDAVQQAREALDA 419

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D++  +LR A   LG ITG +  E +LD IFS+FCIGK
Sbjct: 420 GVSGDMLTLDLRAALQELGAITGEITNEDVLDQIFSRFCIGK 461


>gi|158334891|ref|YP_001516063.1| tRNA modification GTPase TrmE [Acaryochloris marina MBIC11017]
 gi|205829048|sp|B0CBB0|MNME_ACAM1 RecName: Full=tRNA modification GTPase mnmE
 gi|158305132|gb|ABW26749.1| tRNA modification GTPase TrmE [Acaryochloris marina MBIC11017]
          Length = 455

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 143/445 (32%), Positives = 229/445 (51%), Gaps = 23/445 (5%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRILDKGLLIVF 69
               +I I+RLSG     + + + +      +  S R  +G     L  +I+D+GLL++ 
Sbjct: 15  PQQGSIGIVRLSGVEAVSIAKQLFQ-TPGKQQWESHRVLYGYIQQPLTQQIIDEGLLLLM 73

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
            +P S+T ED  EFH HGG+  V  +LE   +     LA PGEF+ RAF NG++DL +AE
Sbjct: 74  LAPRSYTREDVVEFHCHGGMIAVQQVLEACLQA-GAELAQPGEFTLRAFLNGRLDLTQAE 132

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
            +ADL+ + +    + ++ G+ G+L+S   +   +     + +EA +DF +  D+     
Sbjct: 133 GVADLVGARSPQAAQAALAGVQGKLASPIRELRQRCLDTLAEVEARVDFED--DLPPLDE 190

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
             V  ++  +   + + ++    GE++RNG  + I+G  N GKSSL NA  + D AIVTD
Sbjct: 191 AGVQAELQDIHATLQAILATADQGELLRNGLTVAIIGRPNVGKSSLLNAWCRCDRAIVTD 250

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI- 308
           +PGTTRDV+   L + G  +++ DTAGIRET+D VE+ G+ R+    ++ADL+LL  +  
Sbjct: 251 LPGTTRDVVESQLVVGGIPIQVLDTAGIRETEDQVEQIGVTRSHQAAQSADLVLLTIDAS 310

Query: 309 -----NSKKEISFPKNIDFIFIGTKSDLYST----YTEEYDHLISSFT--GEGLEELINK 357
                + ++     +++  I I  K DL       Y E    ++S+     +G+ EL   
Sbjct: 311 VGWTSDDQQLYQAFQDLPLILIVNKVDLVPQEQVVYPEAIAQVVSTIAAQNQGISELETA 370

Query: 358 IKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAENLRLASVS 415
           I   +  +  K        ++R    L +    LE           LD    +LR A  +
Sbjct: 371 ILETVQTQSLKAANLDWAINQRQAAALQKAQAALEHVQGAIADQLPLDFWTIDLRGAIQA 430

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG+ITG    E +LD IFS+FCIGK
Sbjct: 431 LGEITGEDITESVLDRIFSRFCIGK 455


>gi|227500993|ref|ZP_03931042.1| tRNA modification GTP-binding protein TrmE [Anaerococcus tetradius
           ATCC 35098]
 gi|227216766|gb|EEI82164.1| tRNA modification GTP-binding protein TrmE [Anaerococcus tetradius
           ATCC 35098]
          Length = 470

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/459 (30%), Positives = 235/459 (51%), Gaps = 23/459 (5%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-------RKASLRYFF 54
           N E+ TI A+ST +    ISI+R+SGP  +++   I +     P       RK       
Sbjct: 15  NMEERTIAAISTPSGTGGISIVRMSGPKAYEIVSQIFRPIMGKPLDKNDDNRKMRYGNII 74

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
              G I+D+ ++    +P ++T ED  E + HG    V  IL  L       LA  GEF+
Sbjct: 75  DNQGEIIDEVMVCFMKAPFTYTREDICEINCHGSFVSVKKILN-LLLDRGCDLAEAGEFT 133

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG+IDL +AE++ D+I++  ++ ++  +  ++G L         +L    S +E 
Sbjct: 134 KRAFLNGRIDLSQAEAVLDIINARNDLSQKEGINQLNGALREKINSIRQELLEALSRLEY 193

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            ++F+E  D ++    E++  +   K+ I   ++    G+I+R+G    I+G  N GKSS
Sbjct: 194 SINFTE--DGEDLPKDEIIVYMDKAKDMIDKLLNTSNKGKIVRDGINTTIIGKPNVGKSS 251

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIVTDIPGTTRD++T  +    + +KI+DTAGIRETDD+VEK G+ ++  
Sbjct: 252 LLNNLLNENRAIVTDIPGTTRDLITEYISFGDFTLKINDTAGIRETDDVVEKIGVDKSIE 311

Query: 295 EVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY------DHL 342
            ++ +DLI+ + + +       KK +   +  + I I  K+DL   + E+          
Sbjct: 312 LIDQSDLIIAIFDSSRDFDQEDKKIMDLIEGKNAIIILNKTDLSGKFDEKILKTSLPIIR 371

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
            S    EG+++L   I  + + K  K    + ++ RH   L+   + L  +     +   
Sbjct: 372 TSMINEEGIDKLEETITEMFNTKELKRESVLITNTRHERLLNMASKKLTSSLYDINRGIP 431

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D    +LR A   LG I G    ++++D +F +FC+GK
Sbjct: 432 IDACEVDLRGAYDDLGLIIGESVSDEIMDKVFKEFCVGK 470


>gi|219114453|ref|XP_002176397.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402643|gb|EEC42633.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 609

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/501 (33%), Positives = 253/501 (50%), Gaps = 64/501 (12%)

Query: 2   NHEKETIFAVSTGALPS---AISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLD 57
              ++TIFA+S+GA      A+++IRLSGP    + + +   +  P PR A+LR    LD
Sbjct: 111 TSSQDTIFALSSGAATGQATAVAVIRLSGPQAGVILQRLTPGRPLPKPRTAALRKLHDLD 170

Query: 58  GR--ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               +LD+ L++ F  P SFTG+D  E  VHG  AVV  +LE L      RLA PGEF++
Sbjct: 171 DPKVVLDQALVLYFSGPNSFTGDDVVELQVHGSRAVVTAVLETLGT--AARLAEPGEFTQ 228

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RA+  GK+D L+ E+LADL++++T  QR+ ++  + G+LS++Y  W D L    +  EA 
Sbjct: 229 RAWLAGKLDALQVEALADLLTADTATQRQQALAQLDGQLSAVYDTWRDMLVAGLAHAEAV 288

Query: 176 LDFSEEEDVQNF-------------SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
           +DF ++E + +                  V+ ++  L+  +   +   + GE++R G +I
Sbjct: 289 IDFGDDERLDDALLDEEDQQLAQDNVWGGVVGNMEVLERSMRRQLQDARRGELVRQGLQI 348

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TD 281
            I+G  NAGKSSLFN LA +D AIV+   GTTRDVL + L+L G    + DTAG+R  TD
Sbjct: 349 AIVGPPNAGKSSLFNILADRDAAIVSPTAGTTRDVLELSLNLGGVKCVLQDTAGVRTFTD 408

Query: 282 DIVEKEGIKRTFLEVENADLILLLK---EINSKKEISF--------PKNIDFIFIGTKSD 330
           D +E EGI R       ADL+L +    ++ S  EI                + +  KSD
Sbjct: 409 DAIEMEGIARATRAAAQADLVLAMVDSSDVESGLEILTTILQNSPNLDRQHVLLLLNKSD 468

Query: 331 LYSTYTEEYD-------------HLISSFTGEGLEELINKIKSILSNKFKKL-------- 369
           L     +  +             + IS  T  G++  +  +  I   +            
Sbjct: 469 LREEKHQTIEVPGKDVVELIGGQYEISCATQNGVDTFLESLTRICVARVSNTDASDRDKT 528

Query: 370 --------PFSIPSHKRHLYHLSQTVRYLEMASLNEKD--CGLDIIAENLRLASVSLGKI 419
                     ++ +  RH  H+   V  LE      +     +D+ AE LRLA+  LG+I
Sbjct: 529 SIVDRETSEGTLITRARHRQHVQAAVEALERFQTLSQQGTMSVDLAAEELRLAASELGRI 588

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG VDVE +LD +F+ FCIGK
Sbjct: 589 TGAVDVEDVLDKLFADFCIGK 609


>gi|88803376|ref|ZP_01118902.1| tRNA modification GTPase [Polaribacter irgensii 23-P]
 gi|88780942|gb|EAR12121.1| tRNA modification GTPase [Polaribacter irgensii 23-P]
          Length = 464

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 144/464 (31%), Positives = 238/464 (51%), Gaps = 29/464 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-----KKKPFPRKASLRYFFGLDG 58
           + +TI A++T +   AIS+IRLSG     + E   K     K     +  ++     +D 
Sbjct: 3   QNDTIIALATPSGVGAISVIRLSGEQAIPIVEANFKSIQKNKYLKDQKTHTIHLGHIVDN 62

Query: 59  R-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           + +LD+ L+ +F +P+S+TGE+  E   HG   +   I++ L      R+AN GEF+ RA
Sbjct: 63  KSVLDEVLVSIFKNPKSYTGENVVEISCHGSSFIQQEIIQ-LFLRKGCRMANNGEFTMRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K+DL +AE++AD+I+S +    +++++ M G +++   +   +L    + IE +LD
Sbjct: 122 FLNAKMDLSQAEAVADVIASNSAASHQMAIQQMRGGITNELKELRAQLLDFAALIELELD 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FS  EDV+     +    ++ +   +   I     G  ++NG  + I+G  N GKS+L N
Sbjct: 182 FS-GEDVEFADRTKFKELVVQITFVLKRLIDSFSFGNAMKNGIPVAIIGEPNVGKSTLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ AIV++I GTTRD +  +L + G   +  DTAGIRET DI+E  GIK+ + + +
Sbjct: 241 TLLNEEKAIVSEIAGTTRDAIEDELIIAGVAFRFIDTAGIRETIDIIESIGIKKAYEKAD 300

Query: 298 NADLILLLKEINS--------KKEISFPKNI----DFIFIGTKSD--LYSTYTE-----E 338
           NA LI+ L + N           EI   K+       + I  K D  L S   E     E
Sbjct: 301 NAQLIVFLIDANKFNHNQPQFLTEIDTIKSRFPTKRVLVIANKIDTLLASEKAELQTEIE 360

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NE 397
              L+S+    G+E L +++  +++        +I ++ RH   L+  +R +       E
Sbjct: 361 NLILLSAKNNTGVEALKSELTDLVNIGALSNNETIVTNSRHFEALNNALRAISSVQQGIE 420

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVE-QLLDIIFSKFCIGK 440
            +   D+ + ++R     LG ITG  DV+  +L  IFS FCIGK
Sbjct: 421 LEISTDLFSIDIRECLRHLGAITGDYDVDKDILGHIFSNFCIGK 464


>gi|300776911|ref|ZP_07086769.1| tRNA modification GTPase TrmE [Chryseobacterium gleum ATCC 35910]
 gi|300502421|gb|EFK33561.1| tRNA modification GTPase TrmE [Chryseobacterium gleum ATCC 35910]
          Length = 461

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 145/466 (31%), Positives = 252/466 (54%), Gaps = 31/466 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57
           MN   +TI A++T     A+ IIR+SG     V +     K    ++ S    +G    +
Sbjct: 1   MN--NDTICALATANGIGALGIIRVSGNEALSVVQKSFPAKN-LAKQKSHTIHYGYFMDE 57

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ +L +F +P+SFT E+S E   HG   +   ILE L K    R+A  GEF+ RA
Sbjct: 58  EEAIDEVMLSIFLAPKSFTTENSVEIAFHGSPHIGKRILETLIK-NGARMAKAGEFTLRA 116

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++AD+I+SE E  R++++  + G +++        L +  S IE +LD
Sbjct: 117 FINGRIDLSQAEAIADVIASENEASRKVAINQLKGGITNEISILRTDLLNFVSLIELELD 176

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F+E EDV+      +   +  ++  ++S I   + G  I+NG  + I+G  NAGKS+L N
Sbjct: 177 FAE-EDVEFADRSALSGLLDKIEVKLNSLIESFQYGNAIKNGTAVAIIGKPNAGKSTLLN 235

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +L K++ AIV++I GTTRD +   L ++G+  ++ DTAG+RET D +E  G+K+   +VE
Sbjct: 236 SLLKEERAIVSNIAGTTRDTIEEVLHIKGHAFRLIDTAGLRETVDEIEAIGVKKAKEKVE 295

Query: 298 NADLILLLKEINSK---KEISFP-----KNIDFIFIGTKSD-------------LYSTYT 336
           NA++++ L +  ++   ++I        +++  I   TK D               +  +
Sbjct: 296 NANILVYLADAATEDFSEDIEMIQSLVREDLKLIICATKIDEVMPAKYETVEDIFRNAIS 355

Query: 337 EEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS- 394
            E+D + IS+   + +++L N++ S + +   +    + +++RH   L +++  +     
Sbjct: 356 HEFDFIKISAVENQNIQDLKNELSSYVEHLKSEENNVVITNQRHFEALRKSLHAVHKVKE 415

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                   +++A  LR A   LG+I+G V  +++L  IFSKFCIGK
Sbjct: 416 AISFQISTELLAYELRNALEHLGEISGEVTNDEVLGNIFSKFCIGK 461


>gi|87123548|ref|ZP_01079399.1| tRNA modification GTPase TrmE [Synechococcus sp. RS9917]
 gi|86169268|gb|EAQ70524.1| tRNA modification GTPase TrmE [Synechococcus sp. RS9917]
          Length = 460

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/444 (31%), Positives = 230/444 (51%), Gaps = 21/444 (4%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS---LRYFFGLDG-RILDKGLLIVFP 70
                I++IRLSGP+       I +     P ++      +    DG   +D+ L++   
Sbjct: 20  PGQGGIAVIRLSGPAAQPAVRAITRIPGYQPWESHRVLYGHVLAADGQERIDEVLVLPML 79

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
           +P SFT ED  E H HGG+  V  +L  + + P +R A PGEFS+RA  NG++DL  AE+
Sbjct: 80  APRSFTAEDVVEIHCHGGVMAVQRVLARVLEQPGVRRALPGEFSQRAVLNGRLDLTRAEA 139

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           ++DL+++ ++   +L+M G+ G +        ++L    S +EA +DF E  D+      
Sbjct: 140 ISDLVAARSQRAAQLAMAGVDGGIQRRTTALRERLLDQLSELEARVDFEE--DLPPLDGA 197

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
            +L ++  ++ ++   ++ G+    +R+G ++ ++G  N GKSSL N L++++ AIVTD+
Sbjct: 198 ALLAELQAVRAELLQLVADGERSAALRSGLRVALVGRPNVGKSSLLNRLSRRERAIVTDL 257

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-- 308
           PGTTRD+L  ++ LEG  + + DTAGIR T D VE+ GI R+   + +ADL+LLL ++  
Sbjct: 258 PGTTRDLLESEIVLEGVPITLLDTAGIRATTDAVEQLGIARSHDALASADLVLLLFDLSE 317

Query: 309 -----NSKKEISFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLEELINK 357
                +       P+ +  + +G K+DL  +           D  +S+ TG G  ELI  
Sbjct: 318 GWTADDQALRQRIPEEVPHLLVGNKADLSPSSGAGLGAAVAADVCLSASTGAGEAELIQA 377

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSL 416
           + +            +  ++R      Q    L  +  +  +    D    +LR A  SL
Sbjct: 378 LLAR-CGALTDGSLLLALNQRQADLAQQAAEALARSEQVAAEGLPWDFWTIDLRQAIQSL 436

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G ITG    E +LD IFS+FCIGK
Sbjct: 437 GAITGEELSESVLDRIFSRFCIGK 460


>gi|320530991|ref|ZP_08032023.1| tRNA modification GTPase TrmE [Selenomonas artemidis F0399]
 gi|320136740|gb|EFW28690.1| tRNA modification GTPase TrmE [Selenomonas artemidis F0399]
          Length = 462

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 149/463 (32%), Positives = 232/463 (50%), Gaps = 25/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------PFPRKASLRYFF 54
           M  E++TI  ++T      I I+R+SG     V   + +  +        P  A   +  
Sbjct: 2   MRGERDTISQIATPPGAGGIGIVRVSGADALHVARAVFRPARGGRLEGIEPYTARYGHIV 61

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             DG ++D+ +L+   +P S+TGED+AE   HGG  V+  +L    +    R A  GEF+
Sbjct: 62  AADGTVIDECVLLYMRAPHSYTGEDTAELQCHGGTLVLREVLLRTWEA-GARPAEAGEFT 120

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL  AE + +LIS+++    R + E M+G L+        +L    + IEA
Sbjct: 121 KRAFLNGRLDLSRAEGVMELISAKSARAVRAARERMAGALAEKIAGIRTRLLGAIAHIEA 180

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF E +D+    +  +  DI     D++  +     G I+R G K VI+G  N GKSS
Sbjct: 181 GIDFPE-DDIPEARTGALAADIAAASADVARLLEGADAGRILREGMKTVIVGRPNVGKSS 239

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL   + AIVTD+PGTTRDV+   + +EG  +++ DTAG+R  +D VE+ G+ RT  
Sbjct: 240 LLNALLGMERAIVTDVPGTTRDVIEEQIVIEGIPLRLLDTAGLRAAEDAVEQIGVARTQR 299

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIG--TKSDLYSTYT-------EEY 339
            + +A+L+L + +         +  I   +N     I    K D  S  T       +  
Sbjct: 300 HLADAELVLAVFDGAAPLTPEDEDLIVRLRNCAAEMIILCNKEDRDSVLTAADFSMLDAP 359

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMAS-LNE 397
             +IS+  G GL++L   I  I+      L   ++P+ +R    L +   +L  A     
Sbjct: 360 VLVISAQAGTGLDDLRRAIAEIVRRMEGDLGDGALPNVERETEALRRAAEHLRTAQETLA 419

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D G D ++ +LR A   LG+I G      L+D IFS+FCIGK
Sbjct: 420 ADMGTDFVSIDLRAAYEILGEILGETADTDLIDKIFSEFCIGK 462


>gi|313678189|ref|YP_004055929.1| tRNA modification GTPase TrmE [Mycoplasma bovis PG45]
 gi|312950578|gb|ADR25173.1| tRNA modification GTPase TrmE [Mycoplasma bovis PG45]
          Length = 445

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 151/448 (33%), Positives = 235/448 (52%), Gaps = 17/448 (3%)

Query: 5   KETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--DGRIL 61
            +TI A+S+G  +  AISIIR+SGP    V + +   K       +         +  I+
Sbjct: 3   NDTITAISSGGKINQAISIIRVSGPDSVNVVQKVFTGKVGKSHTITFGNIVDNLNNNEIV 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L + F    +F GED+ E + HGG+ + N ILE L      RLA PGEFSRR+F NG
Sbjct: 63  DEVLCMWFLGTNNFVGEDTVEINCHGGVVITNRILE-LLLANGARLAEPGEFSRRSFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           KIDL++AE++ DLI + T  Q +L+++   G+ S    +   +L+ +   +E  +D+ E 
Sbjct: 122 KIDLIKAEAINDLIHASTVSQTKLAIKKFDGKTSLYIQELKKELSFLIGEMEVSIDYPEY 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D  N  + ++   +  ++N I+  I   +   +I  G KI ILG  N GKSS+ N++ +
Sbjct: 182 -DFDNPFNDKLTARLKQIRNKINQTIELSQTSRMIFEGIKIAILGKPNVGKSSILNSILE 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVTDI GTTRD++      +G L K  DTAGIRET + +EK GI ++F +++ AD+
Sbjct: 241 EDKAIVTDIAGTTRDIVEAMWQYKGLLFKFVDTAGIRETKEKIEKIGIDKSFEQIDKADV 300

Query: 302 ILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           +L + + + K +         +   N  +I +  K DL     +  + L  S     L+E
Sbjct: 301 VLHIYDPSQKNDEFDEQIKSKALSLNKVYIPVINKKDLVKNIDD--NLLYVSAKQNDLDE 358

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLA 412
           L  K+ S+  N          ++ R L  + Q  + L+ A +  E     D++  +LR A
Sbjct: 359 LKEKLVSVFKNVDLNNDQ-YVNNSRQLALIKQAQKSLDDALNSIENGYDPDVVIIDLRQA 417

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              L  ITG  D E LLD +F  FC+GK
Sbjct: 418 WSHLTDITGRADNELLLDEMFKNFCLGK 445


>gi|325915706|ref|ZP_08178011.1| tRNA modification GTPase trmE [Xanthomonas vesicatoria ATCC 35937]
 gi|325538123|gb|EGD09814.1| tRNA modification GTPase trmE [Xanthomonas vesicatoria ATCC 35937]
          Length = 428

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 145/430 (33%), Positives = 225/430 (52%), Gaps = 13/430 (3%)

Query: 21  SIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDS 80
            I+RLSGP   Q+   +       PR A    F    G+++D G+ + F +P SFTGED 
Sbjct: 2   GIVRLSGPQAVQIAAQL-GIAPLQPRHAHYARFRDAQGQVIDDGIALWFNAPRSFTGEDV 60

Query: 81  AEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETE 140
            E   HG   V+  ++         R A  GEFS RAF NGK+DL +AE++ADLI++   
Sbjct: 61  VELQGHGSPVVLRQLV-ACCIALGARQARAGEFSERAFLNGKLDLTQAEAIADLIAAGDV 119

Query: 141 MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
                +   + G  S       D LT +R  +EA +DF++ E +      +V   +   +
Sbjct: 120 RAAGAARRSLDGVFSRRIDAVSDSLTRLRVHVEAAIDFAD-EPLDTLGGTQVREGLQQAR 178

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
             ++  +   + G  +R+G   V++G  NAGKSSL NALA  D AIVTD+ GTTRD L  
Sbjct: 179 ALLAQLLRDAERGRKLRDGMHAVLIGPPNAGKSSLLNALAGSDRAIVTDVAGTTRDTLHE 238

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320
            + L+G+ + + DTAG+R+  D +E+EG++R   E++ ADL L++ +    +        
Sbjct: 239 AILLDGFELTLVDTAGLRDGGDAIEREGMRRARAELQRADLALVVLDARDPQAAREAIGD 298

Query: 321 DFI------FIGTKSDLYSTYTEEYD---HLISSFTGEGLEELINKIKSI-LSNKFKKLP 370
                    +I  K DL    T   D     +S+ TG+GLE+L  +++ + LS+  + + 
Sbjct: 299 AIDAVPRQLWIHNKCDLLDNNTPLLDANAVAVSATTGQGLEQLHTRLRELALSDGIESVD 358

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
               +  RH+  L +  ++ + A L      L++ AE LRLA  +LG+ITG +  ++LL 
Sbjct: 359 GEFSARTRHVDALRRAEQHADAAELELGFEQLELAAEELRLAHAALGEITGKLSADELLG 418

Query: 431 IIFSKFCIGK 440
            IFS FCIGK
Sbjct: 419 KIFSSFCIGK 428


>gi|323345523|ref|ZP_08085746.1| thiophene and furan oxidation protein ThdF [Prevotella oralis ATCC
           33269]
 gi|323093637|gb|EFZ36215.1| thiophene and furan oxidation protein ThdF [Prevotella oralis ATCC
           33269]
          Length = 453

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/453 (31%), Positives = 225/453 (49%), Gaps = 21/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF------PRKASLRYFFGLDGR 59
           ETI A++T +   AI +IR+SGP    +                 P            G 
Sbjct: 4   ETICALATPSG-GAIGVIRISGPQAISITANTFHSANGRSLTEANPNTIHYGEIINRKGD 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D  L+ +F +P S+TGEDS E   HG   ++N IL  L      R A  GE+++RA+ 
Sbjct: 63  VIDDVLVSIFRAPHSYTGEDSTEISCHGSHYIINEILHTLI-DAGCRQAKAGEYTQRAYL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ADLI++      R+++  + G  S+      D+L  I S IE +LDFS
Sbjct: 122 NGKMDLSQAEAVADLIATTNRATHRIALSQLKGNFSNELSILRDQLLKITSLIELELDFS 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + +DV     +E+L  +   +  I +  +  +    ++ G  + I+G +N GKS+L N L
Sbjct: 182 D-QDVNFADRQELLELVQKAEQRIGTLATSFETDNALKKGVPVAIVGKTNVGKSTLLNRL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIV+DI GTTRDV+    ++     +  DTAGIR TDD +E  GI+RT+ ++  A
Sbjct: 241 LHEDKAIVSDIHGTTRDVIEDTTEIHDITFRFIDTAGIRHTDDKIELLGIERTYQKINEA 300

Query: 300 DLILLLKEIN-SKKEISFPKNI----DFIFIGTKSDL-----YSTYTEEYDHLISSFTGE 349
            +IL L +   + +EIS  K        I +  K DL       T  +     IS+  G 
Sbjct: 301 TIILWLIDKQPTNEEISEIKKNIRGKKLITVWNKIDLENPPPIPTSLQSPIIYISAKQGT 360

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAEN 408
            + +L + +         K    I +  RH   L+     +       +K+   D+++E+
Sbjct: 361 NIPQLEDALFQAADIPEIKENDIIITSARHYEALTHAHESISRVIEGLQKNLSGDLLSED 420

Query: 409 LRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           LR+    L +IT G +   ++L+ IFS FCIGK
Sbjct: 421 LRICIDHLAEITGGQITTNEVLENIFSHFCIGK 453


>gi|148377321|ref|YP_001256197.1| tRNA modification GTPase TrmE [Mycoplasma agalactiae PG2]
 gi|205415799|sp|A5IXJ1|MNME_MYCAP RecName: Full=tRNA modification GTPase mnmE
 gi|148291367|emb|CAL58750.1| TRNA modification GTPase (TrmE) [Mycoplasma agalactiae PG2]
          Length = 445

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/448 (34%), Positives = 236/448 (52%), Gaps = 17/448 (3%)

Query: 5   KETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--DGRIL 61
            +TI A+S+G  +  AISIIR+SGP    V + I   K       +            ++
Sbjct: 3   NDTITAISSGGKINQAISIIRVSGPDSVNVVKKIFTGKVGTSHTITFGNIVDNLNGNEVI 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L + F    +F GED+ E + HGG+ + N ILE L      RLA PGEFSRR+F NG
Sbjct: 63  DEVLCMWFLGTNNFVGEDTVEINCHGGVVITNSILE-LLLANGARLAEPGEFSRRSFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL++AE++ DLI + T  Q +L+++   G+ S       D+L ++   +E  +D+ E 
Sbjct: 122 KMDLIKAEAINDLIHASTVSQTKLAIKKFDGKTSMYIQDLKDELAYLIGEMEVSIDYPEY 181

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D  N  + ++++ +  ++N IS  I   +   +I  G KI ILG  N GKSS+ NA+ +
Sbjct: 182 -DFDNPFTDKLISRLESIRNKISKTIELSQTSRMIFEGIKIAILGKPNVGKSSILNAILE 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVTDI GTTRD++      +G L K  DTAGIR+T + +EK GI ++F ++E AD+
Sbjct: 241 EDKAIVTDIAGTTRDIVEAMWQYKGLLFKFIDTAGIRDTKEKIEKIGIDKSFEQIEKADV 300

Query: 302 ILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           +L + + +          K  +   N  ++ +  K DL  T  +E+  L  S     L+ 
Sbjct: 301 VLHIYDPSQNDNEFDSQIKNKAHSLNKIYVPVINKKDLLETTNDEF--LYVSAKLNDLDP 358

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLA 412
           L  K+ S+  N          ++ R L  + Q  + LE A  + K     D++  +LR A
Sbjct: 359 LKEKLVSVFKNVDLNNDQ-YVNNSRQLALIKQAHKSLEDAIKSIKLGYDPDVVIIDLRQA 417

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              L  ITG  D E LLD +F  FC+GK
Sbjct: 418 WSHLTDITGRADNELLLDEMFKNFCLGK 445


>gi|81300391|ref|YP_400599.1| tRNA modification GTPase TrmE [Synechococcus elongatus PCC 7942]
 gi|93141330|sp|Q8KPU2|MNME_SYNE7 RecName: Full=tRNA modification GTPase mnmE
 gi|81169272|gb|ABB57612.1| tRNA modification GTPase trmE [Synechococcus elongatus PCC 7942]
          Length = 462

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 145/460 (31%), Positives = 235/460 (51%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           +TI A++T       ++ I+RLSG +  ++   I +     P + S R  +G       G
Sbjct: 7   DTIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQIAGQQPWE-SHRILYGYIRDPESG 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R++D+ LL+   +P S+T ED  E H HGG+  V   L+   +    RLA PGEF+ RAF
Sbjct: 66  RLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQLCIRA-GARLAEPGEFTLRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AES+ADLIS+++    + ++  + G+L     Q  D+   I + +EA +DF
Sbjct: 125 LNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAEVEARIDF 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            +  D+     + +   +     D+ + +S    GE++R G KI I+G  N GKSSL NA
Sbjct: 185 ED--DLPPLDLEAIAAQLTAAGADMQAILSTADRGELLRTGLKIAIVGRPNVGKSSLLNA 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            ++ D AIVTD+PGTTRD++   L + G  V++ DTAGIRET D VE+ G++R+    ++
Sbjct: 243 WSRCDRAIVTDLPGTTRDLVESQLIVGGIPVQVLDTAGIRETSDQVEQIGVERSRRAAQS 302

Query: 299 ADLILLLKEINSKKEISFP------KNIDFIFIGTKSDLYSTYTE----------EYDHL 342
           ADL+LL  + ++              +   + +  K D  S              +    
Sbjct: 303 ADLVLLTIDASAGWSAEDQTIWEAVSDRPILLVINKRDRLSEAERHAIALPQQEFKAIVW 362

Query: 343 ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
            ++   +G+E+L   I + + +       +    ++R +  L+     L       +   
Sbjct: 363 TAAAQQQGIEDLEAAILAAVGTGDLTSANWDWALNQRQVAALTTAQTALRRVEETLQAQL 422

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD    +LR A  +LG ITG    E +LD+IFS+FCIGK
Sbjct: 423 PLDFWTIDLREAIAALGSITGEEIAESMLDLIFSRFCIGK 462


>gi|228473018|ref|ZP_04057775.1| tRNA modification GTPase TrmE [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275600|gb|EEK14377.1| tRNA modification GTPase TrmE [Capnocytophaga gingivalis ATCC
           33624]
          Length = 475

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 143/471 (30%), Positives = 233/471 (49%), Gaps = 34/471 (7%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL--- 56
            +  +TI A++T     AIS+IRLSG    ++ + + K    KP     S     G    
Sbjct: 7   PYTDDTIVALATATGVGAISVIRLSGKEAIELADKVFKTLSGKPLSEAPSHTVHLGTIKS 66

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           + +++D+ L  +F   +S+TGE   EF  HG   +   +++ L      RLA  GEF++R
Sbjct: 67  ETQVIDECLATIFKGKKSYTGEPVVEFSCHGSAYITQEVIK-LCLANGARLAQAGEFTKR 125

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGK+ L +AE++ADLI+S+++   +++++ M G  +S       +L +  S IE +L
Sbjct: 126 AFLNGKLALNQAEAVADLIASDSKASHQVALQQMRGGFTSEIEGLRQELLNFASLIELEL 185

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DFSE EDV     K++   +  +K  +   +     G  I+NG  + I+G  NAGKS+L 
Sbjct: 186 DFSE-EDVAFADRKQLEQLLKRIKTTLQELVQSFSAGNAIKNGIPVAIVGKPNAGKSTLL 244

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  ++ AIV+DI GTTRD +   L + G   +  DTAGIR+T D +E  G+++   ++
Sbjct: 245 NTLLNEERAIVSDIAGTTRDTIEETLHIAGVTFRFIDTAGIRDTRDQIEAIGVEKAKEKI 304

Query: 297 ENADLILLL---KEINSKKEISF-----PKNIDFIFIGTKSDL----YSTYTEEYDH--- 341
           + A ++L L   KE  + + + F      K +  + +  K+D      S + EE +    
Sbjct: 305 KKAQIVLYLYNEKENTTDEVVQFVGENYRKGLKILLLHNKTDNEYIGLSDFDEEIEKKLN 364

Query: 342 -----------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                       IS+     +E L   +             +I ++ RH   L   +  L
Sbjct: 365 PEERKYGYGKLRISAKEKINIEALKKLLSFYAKELTSTESATIITNIRHYEALKNALEAL 424

Query: 391 EMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E       +    D++A ++R     LG ITG V  ++LL  IFS+FCIGK
Sbjct: 425 EKVEEGLINHLSGDLLAIDIREVLYHLGSITGAVSNDELLGNIFSRFCIGK 475


>gi|73986024|ref|XP_865647.1| PREDICTED: similar to GTP binding protein 3 (mitochondrial) isoform
           V isoform 2 [Canis familiaris]
          Length = 471

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 165/444 (37%), Positives = 240/444 (54%), Gaps = 17/444 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYF-FGLDGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R A LR          LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRSLTASRDLPPARSACLRLLSHPHSREPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCAEFHVHGGSAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W   LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCHGWAKTLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    +   + +  L+  +S+H+   + G+ +R+G  IV+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLERANSQVRELELALSAHLRDARRGQRLRSGAHIVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+   +SDTAG+RE    VE+EG++R        D +++
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGAGPVEQEGVRRARQSRSFLDTVVV 334

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKI 358
                S  E     +   + +  KSDL      +          +S  TGEGL+ L+  +
Sbjct: 335 PAGAGSPSE----NSQRLLLVLNKSDLLPRGGPDLSPHLPPHLLLSCLTGEGLDGLLEAL 390

Query: 359 KSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           +  L+           + +  RH +HL   +  L      +            RLA   L
Sbjct: 391 RKELAEVCGDPSTGPPLLTRARHQHHLQGCLDALSHYKQTKDLALAAEAL---RLARGHL 447

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            +ITG  D E++LDIIF  FC+GK
Sbjct: 448 ARITGGGDTEEILDIIFRDFCVGK 471


>gi|169333910|ref|ZP_02861103.1| hypothetical protein ANASTE_00296 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259475|gb|EDS73441.1| hypothetical protein ANASTE_00296 [Anaerofustis stercorihominis DSM
           17244]
          Length = 458

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/458 (31%), Positives = 244/458 (53%), Gaps = 23/458 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRYFFGLD- 57
           +++TI A++T +    ISIIR+SG   F+VC+ + K KK           +  +    D 
Sbjct: 3   KEDTIAAIATPSGYGGISIIRISGSEAFEVCDRVFKMKKGSIFDVPKNTINYGHIVNKDT 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ L+     P SFT ED  E + HGG++V   +L  L      RLA  GEF++RA
Sbjct: 63  NEIIDEVLVSKMCEPHSFTAEDVIEINCHGGMSVTKDVL-TLVLKNGARLAEAGEFTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL++AE+++D+I+++T    + +M  + G+LSS   +    +T++ + +E  + 
Sbjct: 122 FLNGRIDLVQAEAISDIITAKTSNFAKSAMSSLKGDLSSKIDEIKADITNMLARLEVTIQ 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D ++ ++ E++  I  +K  ++  IS  + GEI+++G K+ I+G  N GKS L N
Sbjct: 182 YPEY-DEEDLTNNEIVELINSMKYKLNKIISTFEKGEILKDGIKVAIIGKPNVGKSQLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  ++ AIVT+  GTTRD++   ++++G  VK  DTAGIR  D  VEK GI ++   +E
Sbjct: 241 ALINENKAIVTEEAGTTRDIVDEVVNIKGVPVKFIDTAGIRNADSKVEKIGIDKSIEMLE 300

Query: 298 NADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDL------YSTYTEEYDHLIS 344
            +++IL   + +   +          P N + + +  K DL         +       IS
Sbjct: 301 ESNIILFCIDTSRALDTEDMDIIKMLPDNKEVLVVLNKMDLNTNVDTVKAFDNYKTVEIS 360

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
           +   EG+E++ NKI  +   ++   +  ++ S+ RH   L       + A  +  +   +
Sbjct: 361 ALKKEGIEKIENKIYELAGLSEDDGVGNTLVSNIRHKNLLIGARDDFDNAIKMINEGLEV 420

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D++  ++  A   LG ITG    E ++D IF  FC+GK
Sbjct: 421 DLVEIDINAALYKLGGITGETTSEDIIDEIFKNFCLGK 458


>gi|83594953|ref|YP_428705.1| tRNA modification GTPase TrmE [Rhodospirillum rubrum ATCC 11170]
 gi|123525454|sp|Q2RN77|MNME_RHORT RecName: Full=tRNA modification GTPase mnmE
 gi|83577867|gb|ABC24418.1| tRNA modification GTPase trmE [Rhodospirillum rubrum ATCC 11170]
          Length = 455

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/456 (35%), Positives = 241/456 (52%), Gaps = 25/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------------PFPRKASLRYF 53
           +TIFA +T    + ++I+RLSGP        +  +              P          
Sbjct: 4   DTIFAPATARGRAGVAIVRLSGPRAATALTLLAGRLPEARRATRAALRSPPSGPGPTGPG 63

Query: 54  FGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
               G +LD  L++ FP+P SFTGED AE H+HGG AV+  +L  L  +P LR A  GEF
Sbjct: 64  PEEGGEVLDDALVLWFPAPASFTGEDVAELHIHGGRAVLAAVLGALGDLPGLRPAEAGEF 123

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           SRRAF NG++DL  AE+LADL+ +ET+ QRR ++    G L  LY  W      + + +E
Sbjct: 124 SRRAFLNGRLDLTAAEALADLVDAETQAQRRQALRQADGALVRLYEGWRKTGIGLLAHLE 183

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF + ED+       V   I  L + ++ H+     GE +R+G ++ ++G  N GKS
Sbjct: 184 AVLDFPD-EDLPPEVETAVRGGIGALADALAGHLDDRHRGERLRDGLQVAVVGAPNVGKS 242

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N LA+++ AIV+DI GTTRD++ + LDL GY + ++DTAG+RET D +E EG++R  
Sbjct: 243 SLVNRLARREAAIVSDIAGTTRDIVEVALDLGGYPLVVADTAGLRETSDGIEAEGVRRAR 302

Query: 294 LEVENADLILLLKEINSKKEISFPK----NIDFIFIGTKSDLYSTYTEEY-----DHLIS 344
             +  ADL L + +   +     P         + + TK DL      E         +S
Sbjct: 303 ARLAAADLTLAVSDGTVENGADDPAADLTGEAVLRVVTKRDLLDPRAVERWLARGALPVS 362

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           + TGEGL+ L   ++S     F+       + +RH   L   +          +    ++
Sbjct: 363 TLTGEGLDALEAALESRARAFFEGDGTPALTRQRHRSAL---MEARAALRRAAEAPLAEL 419

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE+LRLA  ++G+ITG V V+ +LD+IF  FCIGK
Sbjct: 420 VAEDLRLALRAIGRITGRVTVDDVLDVIFRDFCIGK 455


>gi|6573766|gb|AAF17686.1|AC009243_13 F28K19.23 [Arabidopsis thaliana]
          Length = 613

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 146/488 (29%), Positives = 236/488 (48%), Gaps = 57/488 (11%)

Query: 7   TIFAVSTGAL--PSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-------------LR 51
           TI A+ T     P A+ I+RLSGP   +V   + +  K   +K S               
Sbjct: 129 TIVAIVTPIGGPPGAVGIVRLSGPKAVEVARRVFRSAKKTKKKESDSDTWRPKSHFVEYG 188

Query: 52  YFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
                +G ++D+ L +   +P S+T ED  E   HG    +  +L    +    RLA PG
Sbjct: 189 AVVDSNGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCVEA-GARLAEPG 247

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+ RAF NG++DL +AE++  LIS+++      ++EG+ G  SSL      +   + + 
Sbjct: 248 EFTLRAFLNGRLDLSQAENVEKLISAKSSAAADAALEGIQGGFSSLVKSLRAQCIELLTE 307

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           IEA LDF +  ++     + V+N I  +  D+ S +      +++++G +I I+G  N G
Sbjct: 308 IEARLDFED--EMPPLDIESVINKITSMSQDVESALDTANYDKLLQSGLQIAIVGRPNVG 365

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NA +K + AIVT++ GTTRDV+  ++ + G  + + DTAGIRET+DIVEK G++R
Sbjct: 366 KSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDTAGIRETNDIVEKIGVER 425

Query: 292 TFLEVENADLILL---LKEINSKKEISFPK---------------------NIDFIFIGT 327
           +    + AD+I++     E  ++++    +                         I +  
Sbjct: 426 SETAAKVADVIIMAVSAVEGWTEEDTELLRKIQSDKVGVSFYDLFGGLLYLKQPMILVMN 485

Query: 328 KSD---------LYSTYTEEYDHLISSF----TGEGLEELINKIKSILS-NKFKKLPFSI 373
           K D         L     +E     S F    TG+G+EEL + I  IL  ++        
Sbjct: 486 KIDCAPPGSCDQLEDQRKKEEVFHKSVFTSAVTGQGIEELEDAILEILGLDRVPTGGHQW 545

Query: 374 PSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432
             ++R    L +T   L  +    E +  +D     LR A++SL +I+G    E++L  I
Sbjct: 546 TVNQRQCEQLVRTKEALVRLREAIEDEIPIDFWTIELREAALSLAQISGQDVSEEVLSSI 605

Query: 433 FSKFCIGK 440
           F+KFCIGK
Sbjct: 606 FAKFCIGK 613


>gi|302346393|ref|YP_003814691.1| tRNA modification GTPase TrmE [Prevotella melaninogenica ATCC
           25845]
 gi|302151216|gb|ADK97477.1| tRNA modification GTPase TrmE [Prevotella melaninogenica ATCC
           25845]
          Length = 462

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/454 (28%), Positives = 223/454 (49%), Gaps = 20/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRY--FFGLDG 58
            +T+ +++T     AI +IR+SG    +V + +      K     +  +L Y      +G
Sbjct: 11  SDTVCSLATQPG-GAIGVIRVSGEKAIEVTDKVFHGVRGKHLTDAKGNTLHYGEILDKEG 69

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           + +D  L+ VF +P S+TGE+S E   HG   ++N +++ L      R A PGE+++RA+
Sbjct: 70  KTIDDVLVSVFRAPHSYTGENSTEISCHGSAYILNQVVKALI-DAGCRQAQPGEYTQRAY 128

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++ADLI++      ++++  + G  SS      ++L  + S +E +LDF
Sbjct: 129 VNGKMDLSQAEAVADLIAASNRATHQVALSQLKGHFSSELSLLREQLLKMTSLLELELDF 188

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+ E+++     E+      +   I       + G+ ++ G  + I+G +N GKS+L N 
Sbjct: 189 SDHEELEFADRTELKALAETIHQKIKLLTDSFETGKALKKGVPVAIVGKTNVGKSTLLNC 248

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIV+DI GTTRDV+    +++G   +  DTAGIR TDD +EK GI+R + +++ 
Sbjct: 249 LLHEEKAIVSDIHGTTRDVIEDTTEIKGVTFRFIDTAGIRHTDDQIEKLGIERAYQKMDE 308

Query: 299 ADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSDLYST-----YTEEYDHLISSFTG 348
           A ++L + +     E         K    I I  K D   T       E     IS+   
Sbjct: 309 AAIVLWVIDEQPTAEECAEMQRLAKGKHLIAIFNKIDSKETERKLLNDELPTIFISAKLK 368

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAE 407
           + ++ L   I              I +  RH   L+      L +    +     D+++E
Sbjct: 369 QNIKALEEAIYEAADIPEISENSVIITSARHYEALTHADESILRVIEALDFGLSGDLVSE 428

Query: 408 NLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           +LR+    L  IT G +   ++L  IF  FCIGK
Sbjct: 429 DLRICLHQLADITGGQITPHEVLGNIFKHFCIGK 462


>gi|126738505|ref|ZP_01754210.1| tRNA modification GTPase [Roseobacter sp. SK209-2-6]
 gi|126720304|gb|EBA17010.1| tRNA modification GTPase [Roseobacter sp. SK209-2-6]
          Length = 428

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 166/437 (37%), Positives = 246/437 (56%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    + +S+IRLSGP    V   IC    P  +   +R      G +LD+ L
Sbjct: 2   DTIFALASAQGKAGVSVIRLSGPESLIVANRICHYPLP-EKGRGVRRIQDQQGEVLDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F SPESFTGE+  EF VHG  AVV+ +L  L+   +LRLA PGEF+RRA E GK+DL
Sbjct: 61  VLTFASPESFTGENVVEFQVHGSTAVVSAVLATLSDEADLRLAEPGEFTRRALEAGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ +   +SG L  L  +W   L    S IE  +DF++ EDV 
Sbjct: 121 SQVEGLADLIDAETEAQRKQAQVILSGGLGRLAERWRQDLIRAASLIEVTIDFAD-EDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV + +  +  D+       ++ E IR G+++ I+G  N GKS+L NALA ++ A
Sbjct: 180 VDVTPEVSSLLEGVSQDLQRETQGVQIAERIREGFEVAIIGAPNVGKSTLLNALAGREAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRD++ + +DL G  V + DTAG+RET+D VE  GI       E+ADL + L
Sbjct: 240 ITSEYAGTTRDIIEVRMDLSGLPVTLLDTAGLRETEDHVEGIGIALAKKRAEDADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E +   E++F        +  K+DL     ++ ++ IS  +G GL+ L++ I   L  +
Sbjct: 300 CEEDEDLELTFCSGDIR--LKPKADLR----DDKENSISGASGYGLDSLVSAISEELRKR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCV 423
              L   + +  RH   ++  +  L  A   L +     D+ AE++R A  +L  + G V
Sbjct: 354 --SLQVGVATRVRHRETMTIALSSLRQAQNVLEQGPEFYDLAAEDMRSAIRALELLVGRV 411

Query: 424 DVEQLLDIIFSKFCIGK 440
            VE LLD IFS FC+GK
Sbjct: 412 GVENLLDEIFSSFCLGK 428


>gi|15834695|ref|NP_296454.1| tRNA modification GTPase TrmE [Chlamydia muridarum Nigg]
 gi|270284862|ref|ZP_06194256.1| tRNA modification GTPase TrmE [Chlamydia muridarum Nigg]
 gi|270288890|ref|ZP_06195192.1| tRNA modification GTPase TrmE [Chlamydia muridarum Weiss]
 gi|301336241|ref|ZP_07224443.1| tRNA modification GTPase TrmE [Chlamydia muridarum MopnTet14]
 gi|14195291|sp|Q9PLM9|MNME_CHLMU RecName: Full=tRNA modification GTPase mnmE
 gi|8163124|gb|AAF73529.1| thiophene and furan oxidation protein ThdF [Chlamydia muridarum
           Nigg]
          Length = 444

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 143/446 (32%), Positives = 222/446 (49%), Gaps = 13/446 (2%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI-LD 62
           + +TI A++T     +++I+R+SGP    +   I           +      +   + +D
Sbjct: 3   QNDTIAAIATPPGEGSVAIVRVSGPDAISISNRIFSGNIAGYASHTAHLGTVVHNEVCID 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+++  +P SFTGED  EF  HGG    + IL  L      R A PGEFS+RAF NGK
Sbjct: 63  QALVLIMRTPRSFTGEDIVEFQCHGGYFACSQILNALL-AEGARAALPGEFSQRAFLNGK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AE++  LIS+E      ++     G  S         +    ++IE   DF EE+
Sbjct: 122 IDLIQAEAIQQLISAENIDAFHIAQNQFQGHTSQAISSISSLIIEALAYIEVLADFPEED 181

Query: 183 -DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            + +     + + + L +  ++   +S    G+ +  G  IV+ G  NAGKSS+ NAL +
Sbjct: 182 IETERSLPVQKITEALTITQEL---LSSFDEGQRLAQGTSIVLAGLPNAGKSSILNALTQ 238

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           K+ AIVTDIPGTTRD+L  +  L+G  +++ D+AGIRET++IVEKEGI+R    +  A+ 
Sbjct: 239 KNRAIVTDIPGTTRDILEENWVLQGKNLRLIDSAGIRETENIVEKEGIERARQAMSQAEG 298

Query: 302 ILLLKEINS--KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI---SSFTGEGLEELIN 356
           IL + + +    +  +       I +  K D+ S    E        S+ TG+G  EL  
Sbjct: 299 ILWVMDASQPVPEFPAILYQKPTILLWNKCDVASPPQLEVPFQQIFVSAKTGKGFSELRQ 358

Query: 357 KIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASV 414
            +   L   +  K         RH   L      L  A    ++    + +A +LR A  
Sbjct: 359 ALNKWLHTTQLGKSSKVFLVSARHHSLLHAVHTCLTDALTGFQEHLPNECLALDLRQALH 418

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           S+G ++G    E +L  IFSKFCIGK
Sbjct: 419 SIGNLSGSEVTENVLGEIFSKFCIGK 444


>gi|195389280|ref|XP_002053305.1| GJ23413 [Drosophila virilis]
 gi|194151391|gb|EDW66825.1| GJ23413 [Drosophila virilis]
          Length = 494

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 157/470 (33%), Positives = 255/470 (54%), Gaps = 36/470 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDG-RILDK 63
           TI+++S+G +   +S+IR+SGP   Q    I    +  P  R+A L+ F+      I+D+
Sbjct: 25  TIYSLSSGHVKCGVSVIRVSGPQTKQALRAIVDNGEYEPKQRQAYLKSFYHPTSKEIIDR 84

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGED+ EF VHG +AV+  +L+ L ++P LR A PGEF++RAF  GK+
Sbjct: 85  GLLLWFPGPASFTGEDACEFQVHGSLAVIAAMLDALGQLPGLRPAQPGEFTKRAFFGGKL 144

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L  LY  W  +L    + +EA +DF+EEE 
Sbjct: 145 DLTEVEGLADLIHAETEAQRKQALLQSTGALGRLYDSWRKRLIRCAAHLEAYIDFAEEEQ 204

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  +K +I +H++  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 205 IEGGVIVKLTRELNAVKQEIRAHLNDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRA 264

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVT+  GTTRD++    +  GY V  +DTAG+R+ T D +E EG+ R    + ++DLI
Sbjct: 265 VSIVTEQAGTTRDIIETMHNFGGYPVVFADTAGLRKHTTDTIEVEGMARAKQCLASSDLI 324

Query: 303 LLLKEINS-----------------KKEISFP----KNIDFIFIGTKSDLYSTY------ 335
           LLL +  +                  +E+  P           +  K+D  S        
Sbjct: 325 LLLTDARALRKVENNEALTGHIDNYLEELDIPPELCSGKRLQLVANKTDTLSAEEVQRLS 384

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA 393
             +    +S    + L E +  ++ +L       +      +H R+   L + + ++E+ 
Sbjct: 385 KLDNVLALSCHKQDNLPEFLGSLQQLLQQLCGVPQAEHPRITHTRYRQQLERCIDHIEIF 444

Query: 394 SLN---EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +   +    + I A+ LR +   + +ITG V  E +LD++F  FCIGK
Sbjct: 445 LRDYKPDVYPDMAIAAQQLRKSVRCIERITGHVSCEDILDVVFKDFCIGK 494


>gi|25009497|sp|Q8PEH9|MNME_XANAC RecName: Full=tRNA modification GTPase mnmE
 gi|21110816|gb|AAM39200.1| thiophene and furan oxidation protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 448

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 146/442 (33%), Positives = 234/442 (52%), Gaps = 12/442 (2%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A+++ A    + I+RLSGP   Q+   +    +  PR A    F    G ++D G+ +
Sbjct: 10  IVAIASAAGIGGVGIVRLSGPQSVQIAAHL-GIARMQPRHAHYARFRDGHGAVIDDGIAL 68

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127
            F +P SFTGED  E   HG   ++  ++    ++   R A  GEFS RAF NGK+DL +
Sbjct: 69  WFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLNGKLDLAQ 127

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           AE++ADLI++      R +   + G  S       + LT +R  +EA +DF++ E +   
Sbjct: 128 AEAIADLIAAGDLRAARAARRALDGVFSQRVDALAETLTRLRIHVEAAIDFAD-EPLDTL 186

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
              +V + +   +N ++  +   + G  +R+G   V++G  NAGKSSL NALA  D AIV
Sbjct: 187 GGNQVRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALAGSDRAIV 246

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           TD+ GTTRD L   + L+G+ + + DTAG+R+  D +E+EG++R   E+E ADL L++ +
Sbjct: 247 TDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERADLALVVLD 306

Query: 308 INSKKEISFPKNIDFI------FIGTKSDLYSTYT--EEYDHLISSFTGEGLEELINKIK 359
               +                 +I  K DL       +     +S+ TG+GLE+L  +++
Sbjct: 307 ARDLQAARDAIGDAIDTVPRQLWIHNKCDLLGNAASLDANAIAVSAVTGQGLEQLHIRLR 366

Query: 360 SI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           ++ L +    +     +  RH+  L +  ++ + A L      L++ AE LRLA  +LG+
Sbjct: 367 ALALGDGVDSVDGEFSARTRHVQALRRAEQHADAADLELGFEQLELAAEELRLAHEALGE 426

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           ITG +  + LL  IFS FCIGK
Sbjct: 427 ITGKLSADDLLGKIFSSFCIGK 448


>gi|254467101|ref|ZP_05080512.1| tRNA modification GTPase TrmE [Rhodobacterales bacterium Y4I]
 gi|206688009|gb|EDZ48491.1| tRNA modification GTPase TrmE [Rhodobacterales bacterium Y4I]
          Length = 428

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/437 (35%), Positives = 240/437 (54%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    + +++IR+SGP        +C    P  R  SLR      G  LD+ L
Sbjct: 2   DTIFALASAQGKAGVAVIRVSGPLALTAGAQLCGGHLP-ARGTSLRILQDESGERLDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +P SFTGE++ EF  HG  AV++ +L+ L ++  LR+A PGEF+RRA ENG +DL
Sbjct: 61  VLSFTAPHSFTGENTVEFQTHGSTAVISAVLDSLRRIDGLRIAEPGEFTRRALENGHLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ +   ++G L  L   W  KL    S IE  +DF++ EDV 
Sbjct: 121 AQVEGLADLIDAETEAQRKQAQVILAGGLGRLAEDWRGKLIRAASLIEVTIDFAD-EDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV   +  ++  +       ++ E IR+G+++ I+G  N GKS+L NALA ++ A
Sbjct: 180 VDVTPEVSALLADVQAGLEKETVGVRIAERIRSGFEVAIVGAPNVGKSTLLNALAGREAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRD++ + +DL G  V + DTAG+R+TDD VE  GI       ++ADL + L
Sbjct: 240 ITSEYAGTTRDIIEVRMDLAGLPVTLLDTAGLRDTDDHVEGIGIALARKRAQDADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E +   ++   +      +  K+DL     +      S  +G+G++ L++ I  +L N+
Sbjct: 300 AERDEVLDVEMQQGDIR--LLPKADLRDDAGDAI----SGQSGQGIDRLVDHISKVLQNR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCV 423
             +    I +  RH   +   +  L  A    K      DI AE +R A  +L  + G +
Sbjct: 354 SAQ--AGIATRARHRDAMVSALASLAGAQEILKRGPEFYDIAAEEMRSAIRALEMLVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
            VE LLD IFS FC+GK
Sbjct: 412 GVENLLDEIFSSFCLGK 428


>gi|313896881|ref|ZP_07830428.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312974328|gb|EFR39796.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 461

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 148/463 (31%), Positives = 232/463 (50%), Gaps = 25/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------PFPRKASLRYFF 54
           M  E++TI  ++T      I I+R+SG     V   + +  +        P  A   +  
Sbjct: 1   MRGERDTISQIATPPGAGGIGIVRVSGADALHVARAVFRPARGGRLEGIEPYTARYGHIT 60

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             DG ++D+ +L+   +P S+TGED+AE   HGG  V+  +L    +    R A  GEF+
Sbjct: 61  AADGTVIDECVLLYMRAPHSYTGEDTAELQCHGGTLVLREVLLRTWEA-GARPAEAGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL  AE + +LIS+++    R + E M+G L+        +L    + IEA
Sbjct: 120 KRAFLNGRLDLSRAEGVMELISAKSARAVRAARERMAGALAEKIAGIRTRLLGAIAHIEA 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF E +D+    +  +  DI     D++  +     G I+R G K VI+G  N GKSS
Sbjct: 180 GIDFPE-DDIPEARTGALAADIAAASADVARLLEGADAGRILREGMKTVIVGRPNVGKSS 238

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL   + AIVTD+PGTTRDV+   + +EG  +++ DTAG+R  +D VE+ G+ RT  
Sbjct: 239 LLNALLGMERAIVTDVPGTTRDVIEEQIVIEGIPLRLLDTAGLRAAEDAVEQIGVARTQR 298

Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIG--TKSDLYSTYT-------EEY 339
            + +A+L+L + +         +  I   +N     I    K D  S  T       +  
Sbjct: 299 HLADAELVLAVFDGAAPLTPEDEDLIVRLRNCAAEMIVLCNKEDRDSVLTAADFSMLDAP 358

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMAS-LNE 397
             +IS+  G GL++L   I  I+      L   ++P+ +R    L +   +L+ A     
Sbjct: 359 VLVISAQAGTGLDDLRRAIAEIVRRMEGDLGDGALPNVERETEALRRAAEHLQAAQETLA 418

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D G D ++ +L  A   LG+I G      L+D IFS+FCIGK
Sbjct: 419 GDMGTDFVSIDLHAAYEILGEILGETADTDLIDKIFSEFCIGK 461


>gi|330813392|ref|YP_004357631.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486487|gb|AEA80892.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 446

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 163/448 (36%), Positives = 259/448 (57%), Gaps = 17/448 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI+A+ST    S I+IIRLSGP+   + + I       PR A L+ F+     I+D+G++
Sbjct: 2   TIYALSTPPGVSGIAIIRLSGPNSLTITKDIIHGTIDKPRMALLKTFYDSKKEIIDEGIV 61

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + +P  +S+TG+D  EFHVHG  AV+N  L EL+   + +LA  GEF+++AF N KI+L 
Sbjct: 62  VWYPKGQSYTGDDLIEFHVHGSKAVINKFLNELSLRSDCQLAEAGEFTKQAFLNNKINLY 121

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           EAES+ADL+++ETE QR  ++   +     L+ +W +++  +RS  EA +DFSE ED+  
Sbjct: 122 EAESIADLLNAETEGQRIQALRLKNSSP--LFMKWREQILDVRSKCEAAIDFSE-EDLPA 178

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              +  +  I  +  +I+  +   K+GEI+R G+KI I G  N+GKSS  N LAK+  AI
Sbjct: 179 SILEGNVQKIKEISQEITVMLDDSKVGEIMREGFKIAIFGPPNSGKSSFLNLLAKRKAAI 238

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           V++I GTTRDV+ + L ++ + V +SDTAGIR   + +EK GI     ++  ++L +L+ 
Sbjct: 239 VSEIKGTTRDVIEVQLQIKNFPVVLSDTAGIRAAKNKIEKIGIALALKQITKSNLNILIL 298

Query: 307 EINSKK---EISFPKNIDFIFIGTKSD---------LYSTYTEEY--DHLISSFTGEGLE 352
           +   K    EI    N   + I  K D         L +   +++   H IS+ T  G +
Sbjct: 299 DGTIKTISNEIKKLINEKTLIIINKQDKKNFDGRLVLKNIKGKKFLGIHKISTLTKFGYK 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
           +LI  +K+IL++       ++ S  RH   LS+T ++L+      +   ++  AE L++A
Sbjct: 359 KLIEDLKNILNSLHDHGDDTLISRSRHRTLLSKTSKHLKNYLKISQSAEIEKTAEELKIA 418

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           S  L +I G + VE++L  IF  FC+GK
Sbjct: 419 SNYLSEIVGFIGVEEVLGRIFKDFCVGK 446


>gi|319957038|ref|YP_004168301.1| tRNA modification GTPase trme [Nitratifractor salsuginis DSM 16511]
 gi|319419442|gb|ADV46552.1| tRNA modification GTPase trmE [Nitratifractor salsuginis DSM 16511]
          Length = 446

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 241/448 (53%), Gaps = 15/448 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T    ++ISIIRLSGP    +   I  K    PR A L   F  +G ++D+G
Sbjct: 2   NDTIAAIATAHGVASISIIRLSGPQSLDIARKIAPKATFTPRYAQLCDLFDAEGVLIDRG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ F +P S+TGE+  EF VHGG+ V   ILE  A+    RLA PGEFS+RAF NGKID
Sbjct: 62  IVLRFQAPHSYTGEEIVEFQVHGGLVVAEQILES-ARRHGARLAEPGEFSKRAFLNGKID 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE++A +I +++    R+    + GEL     +  +KL    +  E  +D++E ED+
Sbjct: 121 LSEAEAIAKMIEAKSADAARILARQIKGELGRFVEESREKLLRALAHSEVMIDYAE-EDI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                + +   ++ LK+ +   +   +    +  G+++ I+G  N GKSSL NA+   + 
Sbjct: 180 PEDLIRGLEAQLVELKDSLERIVQSSRRRRGLIEGFRVAIVGKPNVGKSSLLNAMLSYER 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+D+ GTTRD +   + +  ++V+I DTAGIR+T+D VE+ G++R+   +E A++++ 
Sbjct: 240 AIVSDVAGTTRDTIEEQIRIGSHIVRIIDTAGIRQTEDRVERIGVERSLASLEEAEVVIA 299

Query: 305 LKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTE---EYDHLISSFTGEGLE 352
           L + +   E         I   ++ + I    K+DL     E   E  H +         
Sbjct: 300 LFDASRPWEREDERILERIEALRDKELIVALNKTDLPRRLEEPRLEKFHPLEISARRDFS 359

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            L+ +++  L +   +    + + +R +  + +  R +  A    K   L+  + +++ A
Sbjct: 360 HLMEELQRRL-DALGQDEELMLASERQIEAVEECARQIREAVAPLKQGELEFFSYHIQEA 418

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++ +IT   + EQ+LD +F +FC+GK
Sbjct: 419 VQAISRITRPYESEQILDRMFGEFCLGK 446


>gi|56750048|ref|YP_170749.1| tRNA modification GTPase TrmE [Synechococcus elongatus PCC 6301]
 gi|56685007|dbj|BAD78229.1| thiophen and furan oxidation protein [Synechococcus elongatus PCC
           6301]
          Length = 482

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 144/460 (31%), Positives = 234/460 (50%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           +TI A++T       ++ I+RLSG +  ++   I +     P + S R  +G       G
Sbjct: 27  DTIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQIAGQQPWE-SHRILYGYIRDPESG 85

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R++D+ LL+   +P S+T ED  E H HGG+  V   L+   +    RLA PGEF+ RAF
Sbjct: 86  RLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQLCIRA-GARLAEPGEFTLRAF 144

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AES+ADLIS+++    + ++  + G+L     Q  D+   I + +EA +DF
Sbjct: 145 LNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAEVEARIDF 204

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            +  D+     + +   +     D+ + +S    GE++R G KI I+G  N GKSSL NA
Sbjct: 205 ED--DLPPLDLEAIAAQLTAAGADMQAILSTADRGELLRTGLKIAIVGRPNVGKSSLLNA 262

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            ++ D AIVTD+PG TRD++   L + G  V++ DTAGIRET D VE+ G++R+    ++
Sbjct: 263 WSRCDRAIVTDLPGRTRDLVESQLIVGGIPVQVLDTAGIRETSDQVEQIGVERSRRAAQS 322

Query: 299 ADLILLLKEINSKKEISFP------KNIDFIFIGTKSDLYSTYTE----------EYDHL 342
           ADL+LL  + ++              +   + +  K D  S              +    
Sbjct: 323 ADLVLLTIDASAGWSAEDQTIWEAVSDRPILLVINKRDRLSEAERHAIALPQQEFKAIVW 382

Query: 343 ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
            ++   +G+E+L   I + + +       +    ++R +  L+     L       +   
Sbjct: 383 TAAAQQKGIEDLEAAILAAVGTGDLTSANWDWALNQRQVAALTTAQTALRRVEETLQAQL 442

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD    +LR A  +LG ITG    E +LD+IFS+FCIGK
Sbjct: 443 PLDFWTIDLREAIAALGSITGEGIAESMLDLIFSRFCIGK 482


>gi|261749388|ref|YP_003257073.1| tRNA modification GTPase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497480|gb|ACX83930.1| tRNA modification GTPase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 463

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/464 (32%), Positives = 241/464 (51%), Gaps = 30/464 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-----KKKKPFPRKASLRYFFGLD- 57
           +++TI A++T    SAIS+IR+SG +     E I       KK       +L     +D 
Sbjct: 3   DEDTIVALATPMGSSAISVIRISGNNSISTVETIFVSVISGKKLENQSTHTLHLGSIVDE 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             +LD+ L+ +F SP S+TGE+  E   HG   +   IL+ L K   LRLA PGEF+ RA
Sbjct: 63  NVLLDQVLVSIFRSPSSYTGENMIEISCHGSYYIQQKILQLLIK-KGLRLARPGEFTFRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K+DL +AE++ADLI SE +    +S++ + G L+        KL    S +E +LD
Sbjct: 122 FLNKKVDLSQAEAIADLILSENQADHEISLQQIKGSLTHTIKNLRKKLLDFASLLELELD 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE EDV      E+ + +  L+  +   I    LG  I+ G  + I+G  N GKS+LFN
Sbjct: 182 FSE-EDVIFAKRSELFSFLKDLEKTLKDLIESFSLGNAIKKGIYVAIIGEPNVGKSTLFN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            + K++ +I++ I GTTRD +  +  L G      DTAGIRET D +E  G+++T  +++
Sbjct: 241 YVIKENRSIISHIEGTTRDSIEGEFVLNGIHFHFVDTAGIRETKDPIEIMGVQKTMEKIQ 300

Query: 298 NADLILLLKEINSKK---------EISFPKN----IDFIFIGTKSDLYS-------TYTE 337
            + ++L L E ++K+         EI            + I  KSD+ S           
Sbjct: 301 ESQVLLYLFEASTKEKKKQKKILHEIQLLHKKYPLKKILAIANKSDVSSFKDFYKIKSKI 360

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
            Y   IS+    G+++++  + ++   K ++    I +  RH   L +++  + +A    
Sbjct: 361 PYFFEISAKNHHGIKKMLYTLSNLFIKKLQEKNI-IVTQNRHYEALKKSLEEVFLAHEAF 419

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            K    D+I+ +++ A   LG+ITG +  E++L  IFSKFCIGK
Sbjct: 420 NKRVSEDLISIHIKEALRYLGEITGEITNEEILKNIFSKFCIGK 463


>gi|210624042|ref|ZP_03294159.1| hypothetical protein CLOHIR_02111 [Clostridium hiranonis DSM 13275]
 gi|210153249|gb|EEA84255.1| hypothetical protein CLOHIR_02111 [Clostridium hiranonis DSM 13275]
          Length = 462

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 149/468 (31%), Positives = 240/468 (51%), Gaps = 44/468 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSG----------PSCFQVCEFIC----KKKKPFPRKASL 50
            +TI A++T                        P   +V E I      KK       +L
Sbjct: 7   DDTIAAIATAPGE----------GGIGIIRISGPKSLEVAEEIFFSMSGKKISEYPARTL 56

Query: 51  RYFFGLDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109
            +    DG + +D+ L+     P S+T ED  E + HGG   V  ILE L    ++RLA 
Sbjct: 57  IFGNIKDGDKKIDEVLVAYMKGPNSYTAEDVIEINCHGGFISVKRILE-LVLSKDVRLAE 115

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
            GEF++RAF NG+IDL +AE++ D+I+++T+    ++   + G LS+   ++ +K+T + 
Sbjct: 116 AGEFTKRAFLNGRIDLSQAEAVIDVINAKTDKAHEVAENQLDGSLSNRIREFREKVTELL 175

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           + +E  +D+ E ED++  +   +      L  DI       + G+I R G K VI+G  N
Sbjct: 176 AQVEVAIDYPE-EDIEFIAYTTLEEKTRELNKDIKKLYETSESGKIFREGLKTVIVGKPN 234

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKSSL N++  ++ AIVTDIPGTTRDV+   ++++G  +KI DTAGIRETDD+VEK G+
Sbjct: 235 VGKSSLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRETDDVVEKIGV 294

Query: 290 KRTFLEVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTY-------- 335
           +++    + ADLI+++ + +S      ++ +   +  + I +  K+DL            
Sbjct: 295 EKSMASFDTADLIIMVVDSSSELSEEDREILEKVQGKETILLLNKTDLPQVIDEEEVKKY 354

Query: 336 -TEEYDHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
             EE    IS+   EG+E++ ++I++++     K     I ++ RH   L + ++  E A
Sbjct: 355 VNEENIIKISALHNEGIEDVHDRIEAMVYKGDIKSSSNVIITNSRHKDALYRAMKSAEDA 414

Query: 394 -SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               E    LD +  +L+     LG I G    E LLD IF  FCIGK
Sbjct: 415 MRAIEDRMPLDFVEVDLKNIWDYLGYINGDTVSEDLLDNIFHNFCIGK 462


>gi|300727852|ref|ZP_07061232.1| tRNA modification GTPase TrmE [Prevotella bryantii B14]
 gi|299774900|gb|EFI71512.1| tRNA modification GTPase TrmE [Prevotella bryantii B14]
          Length = 454

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/458 (30%), Positives = 232/458 (50%), Gaps = 22/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRYFFGL 56
           M ++   I A++T A   AI+IIR+SG     + + I + +K                  
Sbjct: 1   MTNQS--ICALATKAG-GAIAIIRVSGDDSIAITDQIFQGRKSLTEVKANSVHYGNIIDK 57

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +G  +D  L+ VF +P S+TGE+S E + HG I +V  I++ L +    R A PGE+++R
Sbjct: 58  EGNTIDDVLISVFHAPHSYTGENSIEINCHGSIYIVKNIIQALIE-KGCRQAGPGEYTQR 116

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           A+ NGK+DL +AE++ADLI++  +   +L++  + G  SS      ++L  + S +E +L
Sbjct: 117 AYLNGKMDLSQAEAVADLIAATNKATHKLALSQLKGHFSSELSTLREQLLKLTSLLELEL 176

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DFS+ E+++     E+      +   I++     + G  ++NG  + I+G +N GKS+L 
Sbjct: 177 DFSDHEELEFADRSELQALAEKIDKRITTLAHSFETGRALKNGIPVAIIGKTNVGKSTLL 236

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  ++ AIV+DI GTTRDV+   +D+ G   +  DTAGIR+T+D VE+ GIKR + ++
Sbjct: 237 NQLLHEEKAIVSDIDGTTRDVIEDTIDIHGVNFRFIDTAGIRQTEDKVEQIGIKRAYQKL 296

Query: 297 ENADLILLLKEINSKKEISFP-----KNIDFIFIGTKSDLYST-------YTEEYDHLIS 344
           E A ++L + +    KE         K    I +  K D+          +    +  IS
Sbjct: 297 EEATIVLWILDNQPSKEEVLDIQNRTKEKQVIILSNKMDIKPQSSYNFYDFRPFAELQIS 356

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           +  G G+ EL  K+              I +  RH   L +    +E      +     D
Sbjct: 357 AKEGIGITELEQKLYEASDIPEIDEDSIIVTSARHYEALIRAKESIERVIEGMKMSLSGD 416

Query: 404 IIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           ++AE+LR+    L  IT G +   ++L  IF  FC+GK
Sbjct: 417 LLAEDLRICLQELADITGGQITTHEVLGNIFKHFCVGK 454


>gi|195151833|ref|XP_002016843.1| GL21987 [Drosophila persimilis]
 gi|194111900|gb|EDW33943.1| GL21987 [Drosophila persimilis]
          Length = 493

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/470 (32%), Positives = 249/470 (52%), Gaps = 36/470 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLR-YFFGLDGRILDK 63
           TI+++S+G +   +S+IR+SGP   +    I  C   +P  R+A L+ +F  +   ++D+
Sbjct: 24  TIYSLSSGHVKCGVSVIRVSGPQTKRALRAIVGCNDYEPKARQAYLKSFFHPISKEMIDR 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGED+ EF VHG +AV+  +L+ L ++  LR A PGEF++RAF  GK+
Sbjct: 84  GLLLWFPGPASFTGEDACEFQVHGSLAVIAAMLDALGRLDGLRPAEPGEFTKRAFFGGKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++    G L  LY +W  +L    + +EA +DF+EEE 
Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSMGALGRLYNKWRKRLIRCAAHLEAYIDFAEEEQ 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  ++ +I +H++  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 204 IEGGVILQLTKELKAVRGEIRNHLNDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVT+  GTTRD++    +  GY V  SDTAG+R  T D +E+EG+ R    +  +DLI
Sbjct: 264 VSIVTEQAGTTRDIIETMHNFGGYPVIFSDTAGLRRNTADSIEREGMARAKKCLAESDLI 323

Query: 303 LLLKEINSKKEI---------------------SFPKNIDFIFIGTKSDLYSTY------ 335
           LLL +  + +E+                               +  K+D  S        
Sbjct: 324 LLLTDAMAVRELDSNETVAGYVESYLNELDIASDLCSGKRVQLVANKTDTLSLEECHRLD 383

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA 393
                  IS      +   +N ++  L       +      ++ R+   L + +  +++ 
Sbjct: 384 KLSSILSISCHKPANMATFLNALEQQLQELCGTPRAEHPRITNTRYRQQLERCIENIDIF 443

Query: 394 SLNEKDC---GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + K      + I A  LR +   + +ITG V  E +LD++F  FCIGK
Sbjct: 444 LRDYKPDVFPDMAIAAAKLRNSVRCIERITGHVSCEDILDVVFKDFCIGK 493


>gi|169832370|ref|YP_001718352.1| tRNA modification GTPase TrmE [Candidatus Desulforudis audaxviator
           MP104C]
 gi|205829147|sp|B1I6S2|MNME_DESAP RecName: Full=tRNA modification GTPase mnmE
 gi|169639214|gb|ACA60720.1| tRNA modification GTPase TrmE [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 461

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 141/436 (32%), Positives = 224/436 (51%), Gaps = 25/436 (5%)

Query: 29  SCFQVCEFICK--KKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPSPESFTGEDSA 81
              ++   + +   +K +      R ++G       G  +D+ L+ V  +P+S+T ED  
Sbjct: 27  DALKIAGQVFRPVGEKDWRAGPGFRMYYGHAVDPGTGETVDEVLVSVMRAPKSYTREDVV 86

Query: 82  EFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141
           E + HGG+  +  IL+ +      RLA PGEF+RRAF NG++DL++AE++ D+I + T  
Sbjct: 87  EINGHGGVLPLQRILK-IVLDCGARLAGPGEFTRRAFLNGRLDLVQAEAVLDVIRARTGS 145

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
             ++++  + G LS   G   + L  + + IEA +DF EEEDV     + +   +  L+ 
Sbjct: 146 SLQVALGQLRGGLSERIGAMREALLQVLAEIEASIDFPEEEDVPETRLEALAGQLAALEA 205

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
                +   + G + R+G  + I+G  N GKSSL NAL ++  AIVTD+PGTTRDV+   
Sbjct: 206 GCVELLEGAEAGRVYRDGLGVAIVGKPNVGKSSLLNALLREKRAIVTDVPGTTRDVIEET 265

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEIS 315
           +++ G  V++ DTAG+RET D VE+ G+ RT   V  AD++L++ +         ++ ++
Sbjct: 266 VNIRGLPVRLLDTAGLRETADTVERLGVARTRDAVAGADMVLVVLDAASGLEDEDRRVLA 325

Query: 316 FPKNIDFIFIGTKSDL---------YSTYTEEYDHLISSFTGEGLEELINKIKSI-LSNK 365
             +    + +  K DL              +    + +   G GL EL   I  + L  +
Sbjct: 326 LARGKPLVVLINKVDLAPAGIDPDAVRALVDGPVLMAAIIEGRGLNELEETIAGLVLGGR 385

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
                  + S+ RH + L Q  RYLE A S       L++   ++R A  SLG ITG   
Sbjct: 386 VTGHHTVLISNVRHQHALEQAGRYLEEARSALVSGMPLEMAVIDIRNALDSLGDITGETA 445

Query: 425 VEQLLDIIFSKFCIGK 440
            E LLD IFS FCIGK
Sbjct: 446 GEDLLDRIFSHFCIGK 461


>gi|116620213|ref|YP_822369.1| tRNA modification GTPase TrmE [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122255446|sp|Q02A42|MNME_SOLUE RecName: Full=tRNA modification GTPase mnmE
 gi|116223375|gb|ABJ82084.1| tRNA modification GTPase trmE [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 444

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 136/442 (30%), Positives = 222/442 (50%), Gaps = 9/442 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A++T    + I ++R+SGP    +           P +A L       G  +D+ +
Sbjct: 5   ETIVAIATPPGRAGIGMVRVSGPDARAIVSRFVTSIAWQPWQAHLAKLLDQQGHEIDQVI 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +  F  P S+T ED  E   HG   V+   +E   +    RLA PGEF+ RAF NG+IDL
Sbjct: 65  VTFFERPRSYTAEDLVEITCHGSPVVLRHAVERALEA-GARLARPGEFTLRAFLNGRIDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             AE++ DLI + T  Q R++ + + G +S       ++L  + + +EA +DF+E +D+ 
Sbjct: 124 PRAEAVRDLIDATTLYQARIAAQQVEGSVSRRIAPLKEQLLELIALLEAGIDFAE-DDIS 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                E+L  +  +        +  + G ++  G  + I+G  N GKSSLFN L ++D A
Sbjct: 183 VAPPAEILRRLSPVLEGTERLAASFQYGGLVHQGLTLAIVGRPNVGKSSLFNRLLEQDRA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT+IPGTTRDV++    + G  VK+ DTAGIRET++ VE  GI+R++  + ++DL L++
Sbjct: 243 IVTEIPGTTRDVVSETAAIGGIPVKLYDTAGIRETEERVESLGIERSYQAIVDSDLALVV 302

Query: 306 KEIN-----SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIK 359
            ++          +        + +  K DL +      +   +S+ TG+G+ EL + I 
Sbjct: 303 LDLTRPVTAEDASLIARAGARALIVANKCDLPAAGDVPAEAIPVSALTGQGVPELRSAIL 362

Query: 360 S-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
             +      +      +  RH   L + V YL+ A         +++  +L  A   +  
Sbjct: 363 DAVAPKGVLEHETGFITSLRHEQLLREAVEYLQKAREAVASIPHEMLLLDLYAALRPIDA 422

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           ITG    + +L+ IFS FCIGK
Sbjct: 423 ITGATTADDILNRIFSTFCIGK 444


>gi|27375745|ref|NP_767274.1| tRNA modification GTPase TrmE [Bradyrhizobium japonicum USDA 110]
 gi|81842005|sp|Q89WP4|MNME_BRAJA RecName: Full=tRNA modification GTPase mnmE
 gi|27348883|dbj|BAC45899.1| tRNA modification GTPase [Bradyrhizobium japonicum USDA 110]
          Length = 452

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 177/461 (38%), Positives = 255/461 (55%), Gaps = 30/461 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+   +TIFA+S+G  PSAI+++R+SG     V   +   K P PR+AS R      G+ 
Sbjct: 1   MHPRDQTIFALSSGRPPSAIAVVRVSGAQAGLVLTTLAG-KLPAPRQASRRLLRDGTGQP 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +++ FP P S TGED AEFH HGG AV+  +L  ++ +PN+R A PGEF+RRAFEN
Sbjct: 60  IDDAVVLWFPGPASATGEDVAEFHAHGGRAVLAALLAAISVIPNMRAAEPGEFTRRAFEN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL EAE L DLI ++T+ QRR ++  + G L +    W +++    + IEA +DFS+
Sbjct: 120 GKLDLTEAEGLDDLIHADTDRQRRQALRQLQGLLGNRARDWRERIIEASALIEAGIDFSD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E DV        +  I  L  +I+  ++     E +R+G  + I G  N GKS+L N LA
Sbjct: 180 EGDVPAELRAPAVKAIKALHVEITEVLAAQGHSERLRDGMVVAIAGEPNVGKSTLMNQLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           ++DVAIV+   GTTRDV+ + LDL+GY V + DTAGIRETDD VE+EG++R     E+AD
Sbjct: 240 RRDVAIVSPHAGTTRDVIEVQLDLDGYPVTVIDTAGIRETDDPVEQEGVRRARARAEDAD 299

Query: 301 LILLLKEINSKKEI------------SFPKNIDFIFIGTKSDLYSTYTEEY--DHLISSF 346
           L+L L E     +             S P       +  K DL     E    +  IS+ 
Sbjct: 300 LVLWLVEGEQAADPASMRSLWTSGDGSHPSGGSVWIVRNKIDLGEFGDEGPQGEFGISAS 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII- 405
            G+G+ EL++ +    +  F     ++ +  R    L Q    L           L+++ 
Sbjct: 360 RGDGIRELVDALVKFSAEFFGTSEGALVTRARQRDLLRQASDSLRR--------SLELVG 411

Query: 406 ------AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 AE LR A+ +LG++ G VDVE +L  IF KFCIGK
Sbjct: 412 EGEELAAEELRSAAYALGRLLGRVDVEDVLGAIFQKFCIGK 452


>gi|260655716|ref|ZP_05861189.1| tRNA modification GTPase TrmE [Jonquetella anthropi E3_33 E1]
 gi|260629633|gb|EEX47827.1| tRNA modification GTPase TrmE [Jonquetella anthropi E3_33 E1]
          Length = 454

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 144/454 (31%), Positives = 232/454 (51%), Gaps = 22/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEF--ICKKKKPFPRKASLRYFFGLDGRILDK 63
           +TI A++T      ++I+RLSGP  +++     I    +  PR A         G+ +D 
Sbjct: 4   DTIAAIATPWGDGGVAIVRLSGPDSWRIAHARVILPCGEMTPRYAHNGQLTDEWGQTIDH 63

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L++ F +P S+TGED  E H HGG  +    LE L      R A PGEF+RRAFENG++
Sbjct: 64  VLVLPFKAPRSYTGEDVVEIHCHGGSLLAQRCLE-LVISAGARQALPGEFTRRAFENGRL 122

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++A LI + +    R +   +SGEL+       D L  + + +E  LDF + ED
Sbjct: 123 DLSQAEAVAALIHARSNEALRAANRTLSGELTEQVKDLRDGLISLAAEVEVGLDFPD-ED 181

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V       +   +  L++ ++    +   G I+R G ++ ++G  NAGKSSL NAL K+ 
Sbjct: 182 VPLVDDGTLAERMEVLRSLLADLKDRCASGVILREGVRVALVGRPNAGKSSLLNALLKES 241

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
            +IVT +PGTTRD++   L   G  +++ DTAG+ E + D VE  G++R    +++AD+ 
Sbjct: 242 RSIVTSVPGTTRDIVEAVLTYRGVPLRLVDTAGMGEPSHDEVELLGVERAKKAMKSADVR 301

Query: 303 LLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE---------YDHLISSFT 347
           + + + +   +      I+       + + +KSDL   + E+            ++S+  
Sbjct: 302 VWIIDGSRPADDLDMKLIADAAAGSHVLVISKSDLERKFDEKELAEQFPDSPLVVLSAKK 361

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           G GL+EL   I S+     K +  S+ +  R +  L      LE   L  E   G   +A
Sbjct: 362 GAGLDELKEAIVSLAYG-NKSVDDSLNASVRQVGELKAASESLEDGRLALESGLGQGAVA 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L  A  +L ++ G  + + LLD IFS+FC+GK
Sbjct: 421 SCLADAKRALDRLLGLENDQSLLDEIFSRFCVGK 454


>gi|297842581|ref|XP_002889172.1| hypothetical protein ARALYDRAFT_895691 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335013|gb|EFH65431.1| hypothetical protein ARALYDRAFT_895691 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 560

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/471 (30%), Positives = 230/471 (48%), Gaps = 40/471 (8%)

Query: 7   TIFAVSTGAL--PSAISIIRLSGPSCFQVCEFICKKK-------------KPFPRKASLR 51
           TI A+ T     P A+ I+RLSGP   +V   + +               +P        
Sbjct: 93  TIVAIVTPIGGPPGAVGIVRLSGPKAVEVARRVFRSAKKRKKKDSDSDSWQPKSHFVEYG 152

Query: 52  YFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
                 G ++D+ L +   +P S+T ED  E   HG    +  +L    +    RLA PG
Sbjct: 153 VVVDSHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCVEA-GARLAEPG 211

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+ RAF NG++DL +AE++  LIS+++      ++EG+ G  SSL      +   + + 
Sbjct: 212 EFTLRAFLNGRLDLSQAENVEKLISAKSSAAADAALEGIQGGFSSLVKSLRAQCIELLTE 271

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           IEA LDF +  ++     + V+N I  +  D+ S +      +++++G +I I+G  N G
Sbjct: 272 IEARLDFED--EMTPLDIESVINKINSMSEDVESALDTANYDKLLQSGLQIAIVGRPNVG 329

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NA +K + AIVT++ GTTRDV+  ++ + G  + + DTAGIRET+DIVEK G++R
Sbjct: 330 KSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITVLDTAGIRETNDIVEKIGVER 389

Query: 292 TFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSD---------LYSTY 335
           +    + AD+I++           +++       +   I +  K D         L    
Sbjct: 390 SETAAKVADVIIMAVSAVEGWTEEDTELLRKIQSDKPMILVMNKIDSAPPSSCDQLEDQR 449

Query: 336 TEEYDHLISSF----TGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL 390
            +E     S F    TG+GLEEL + I  IL  ++          ++R    L +T   L
Sbjct: 450 KKEEVFHKSVFTSAVTGQGLEELEDAILEILGLDRVPTGGHQWTVNQRQCEQLVRTKEAL 509

Query: 391 EMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                  E +  +D     LR A+++L +I+G    E++L  IF+KFCIGK
Sbjct: 510 ARLREAIEDEIPIDFWTIELREAALALAQISGQDVSEEVLSSIFAKFCIGK 560


>gi|195504826|ref|XP_002099245.1| GE10804 [Drosophila yakuba]
 gi|194185346|gb|EDW98957.1| GE10804 [Drosophila yakuba]
          Length = 493

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/470 (33%), Positives = 253/470 (53%), Gaps = 36/470 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGL-DGRILDK 63
           TI+++S+G +   +S+IR+SGP   +    I   K+  P  R+A L+ F+      ++D+
Sbjct: 24  TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYEPKARQAYLKSFYHPASKEMIDR 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGEDS EF VHG +AV+  +L+ L K+  LR A PGEF++RAF  GK+
Sbjct: 84  GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L+ LY  W  +L    + +EA +DF+EEE 
Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  +K +I  H+S  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 204 IEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVTD  GTTRD++    +  GY V  SDTAG+R  T D +E+EG++R    +  +DLI
Sbjct: 264 VSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKNCLVQSDLI 323

Query: 303 LLLKEINSKK-----------------EISFPKNID----FIFIGTKSD-LYSTYTEEYD 340
           LLL E                      E+  P ++        +  K+D L     ++ D
Sbjct: 324 LLLAEAKHIAQLTHDDAVAPFVDSYLGELDIPLDMCSGKRLQLVANKTDTLSDEEHQQLD 383

Query: 341 H-----LISSFTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA 393
                  IS    + +   +  ++  L       +      ++ R+   L + +  +++ 
Sbjct: 384 KLSNVLAISCHKPDKMPVFLGSLEKQLQELCGEPRAENPRITNTRYRQQLERCIENIDIF 443

Query: 394 SLN---EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +   +    + I A  LR A   + +ITG +  E +LD++F  FCIGK
Sbjct: 444 LRDYRPDVYPDMAIAASKLRNAVRCIERITGHISCEDILDVVFKDFCIGK 493


>gi|84501195|ref|ZP_00999400.1| tRNA modification GTPase [Oceanicola batsensis HTCC2597]
 gi|84390486|gb|EAQ02974.1| tRNA modification GTPase [Oceanicola batsensis HTCC2597]
          Length = 426

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 167/436 (38%), Positives = 256/436 (58%), Gaps = 12/436 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA +T    + ++I+RLSGP  +Q    +     P PR+ +LR   G +G +LD+GL
Sbjct: 2   DTIFAQATAPGKAGVAIVRLSGPRAWQAVSELSGP-LPAPRRVALRTIAGPEG-VLDEGL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +++F    SFTGE  AE  +HG  AVV  +L+ L+ M  LR A PGEF+RRA ENG +DL
Sbjct: 60  VLIFEEGASFTGEKVAELQLHGSTAVVEAVLKVLSDMEELRSAEPGEFTRRALENGCLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ +   ++GEL      W   L    + IEA +DF++ E+V 
Sbjct: 120 AQVEGLADLIDAETEAQRKQAQRVLAGELGEKAEAWRRDLIRAAALIEATIDFAD-EEVP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EVL+ +  ++N +S   +   + E +R G+++ I+G  N GKSSL NALA ++ A
Sbjct: 179 TDVTPEVLSLLHDVRNGLSREAAGVGIAERVRQGFEVAIVGAPNVGKSSLLNALAGREAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +++ GTTRDV+ + +DL G  V + DTAG+R+TDD+VE  G++R       ADL + L
Sbjct: 239 ITSEVAGTTRDVIEVRMDLAGLPVTVLDTAGLRDTDDVVETIGVERARERAAVADLRVFL 298

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
             +      +FP     I   +K+D+      E    +S+ TG GL +L+ +I   LS+ 
Sbjct: 299 VFLGEAP--AFPPGPKDIVRVSKADVV----GEAAGRVSAETGYGLTDLVAEISGKLSDM 352

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDIIAENLRLASVSLGKITGCVD 424
             +   S+ + +RH   L + + +L+ A+    + G +++ AE +R A  +L  + G VD
Sbjct: 353 LGR--SSVATRERHRIALERAMDFLDAANQVLTERGDMEVAAEEIRSAIRALESLVGRVD 410

Query: 425 VEQLLDIIFSKFCIGK 440
           VE LLD IF+ FCIGK
Sbjct: 411 VEMLLDDIFASFCIGK 426


>gi|116072006|ref|ZP_01469274.1| tRNA modification GTPase [Synechococcus sp. BL107]
 gi|116065629|gb|EAU71387.1| tRNA modification GTPase [Synechococcus sp. BL107]
          Length = 451

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 135/439 (30%), Positives = 238/439 (54%), Gaps = 16/439 (3%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDGRI-LDKGLLIVFP 70
                I++IRLSGP   QV + + +   +++    +    +   +DG+  LD+ LL++  
Sbjct: 16  PGQGGIAVIRLSGPVAEQVGQAVVRCPGRQEWGSHRILYGHVMAVDGQRRLDEVLLLLMR 75

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
           +P SFTGED  E H HGG+  V  ++E + + P +R A PGEFS+RA  NG++DL +AE+
Sbjct: 76  APRSFTGEDVVEIHCHGGVMAVQQVMERVLEQPGVRRALPGEFSQRAVLNGRLDLTQAEA 135

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           ++ L+S+ +     L+M G+ G + +      ++L    + +EA +DF +  D+      
Sbjct: 136 VSALVSARSRRAADLAMAGLDGGIQARITALRERLLDQLTELEARVDFED--DLPPLDGT 193

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
            +LN++  ++ ++ + ++ G+ G+ +R+G ++ ++G  N GKSSL N L++++ AIVT++
Sbjct: 194 ALLNELQAVRTELLALVADGERGDALRHGLRVALVGRPNVGKSSLLNRLSRRERAIVTEL 253

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE--- 307
           PGTTRD+L  ++ L+G  + + DTAGIR T+D VE+ GI R+   + +ADL+LL+ +   
Sbjct: 254 PGTTRDLLESEIVLDGVPITLMDTAGIRATNDAVEQLGIARSEEALMSADLVLLIVDGHA 313

Query: 308 ----INSKKEISFPKNIDFIFIGTKSDLY-STYTEEYDHLISSFTGEGLEELINKIKSIL 362
                +++     P  +  + +  KSDL       E D   S+  G G + L+  +    
Sbjct: 314 GWTETDAQLLARIPNAVPRVVVANKSDLDGPPLPREVDVQFSALNGAGEDALVQVLLER- 372

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKITG 421
                     +  + R     S     L  +  + ++    D    +LR A   LG+ITG
Sbjct: 373 CGAGDAAAIVLSLNTRQRDLASAAAAALARSHEVAQQQLPWDFWTIDLREAIRGLGEITG 432

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               E +L+ +FS+FCIGK
Sbjct: 433 EELTEAVLERVFSRFCIGK 451


>gi|194909733|ref|XP_001981998.1| GG12352 [Drosophila erecta]
 gi|190656636|gb|EDV53868.1| GG12352 [Drosophila erecta]
          Length = 493

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/470 (34%), Positives = 254/470 (54%), Gaps = 36/470 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGL-DGRILDK 63
           TI+++S+G +   +S+IR+SGP   +    I   K+  P  R+A L+ F+      ++D+
Sbjct: 24  TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYEPKARQAYLKSFYHPASKEMIDR 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGEDS EF VHG +AV+  +L+ L ++  LR A PGEF++RAF  GK+
Sbjct: 84  GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGRVDGLRPAAPGEFTKRAFFGGKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L+ LY  W  +L    + +EA +DF+EEE 
Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  +K +I  H+S  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 204 IEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVTD  GTTRD++    +  GY V  SDTAG+R  T D +E+EG++R    V  +DLI
Sbjct: 264 VSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKNCVVQSDLI 323

Query: 303 LLLKEINSKK-----------------EISFPKNID----FIFIGTKSD-LYSTYTEEYD 340
           LLL E  +                   E+  P ++        +  K+D L     ++ D
Sbjct: 324 LLLAEAKNIAQLTHDDAVAPFVDSYLGELDIPLDMCSGKRLQLVANKTDTLSDEEHQQLD 383

Query: 341 H-----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS--HKRHLYHLSQTVRYLEMA 393
                  IS    + +   +  ++  L     +     P   + R+   L + +  +++ 
Sbjct: 384 KLSNVLAISCHKPDKMPVFLGSLEKQLQELCGEPQAENPRITNTRYRQQLERCIENIDIF 443

Query: 394 SLN---EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +   +    + I A  LR A   + +ITG +  E +LD++F  FCIGK
Sbjct: 444 LRDYRPDVYPDMAIAASKLRNAVRCIERITGHISCEDILDVVFKDFCIGK 493


>gi|198453278|ref|XP_002137635.1| GA27334 [Drosophila pseudoobscura pseudoobscura]
 gi|198132291|gb|EDY68193.1| GA27334 [Drosophila pseudoobscura pseudoobscura]
          Length = 493

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/470 (32%), Positives = 250/470 (53%), Gaps = 36/470 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLR-YFFGLDGRILDK 63
           TI+++S+G +   +S+IR+SGP   +    I  C   +P  R+A L+ +F  +   ++D+
Sbjct: 24  TIYSLSSGHVKCGVSVIRVSGPQTKRALRAIVGCNDYEPKARQAYLKSFFHPISKEMIDR 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGED+ EF VHG +AV+  +L+ L ++  LR A PGEF++RAF  GK+
Sbjct: 84  GLLLWFPGPASFTGEDACEFQVHGSLAVIAAMLDALGRLDGLRPAEPGEFTKRAFFGGKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L  LY +W  +L    + +EA +DF+EEE 
Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALGRLYNKWRKRLIRCAAHLEAYIDFAEEEQ 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  ++ +I +H++  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 204 IEGGVILQLTKELKAVRGEIRNHLNDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVT+  GTTRD++    +  GY V  SDTAG+R  T D +E+EG+ R    +  +DLI
Sbjct: 264 VSIVTEQAGTTRDIIETMHNFGGYPVIFSDTAGLRRNTADSIEREGMARAKKCLAESDLI 323

Query: 303 LLLKEINSKKEI---------------------SFPKNIDFIFIGTKSDLYSTY------ 335
           LLL +  + +E+                               +  K+D  S        
Sbjct: 324 LLLTDAMAVRELDSNETVAGYVESYLNELDIASDLCSEKRVQLVANKTDTLSLEECHRLD 383

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA 393
                  IS      +   +N ++  L       +      ++ R+   L + +  +++ 
Sbjct: 384 KLSSILSISCHKPANMATFLNALEQQLQELCGTPRAEHPRITNTRYRQQLERCIENIDIF 443

Query: 394 SLNEKDC---GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + K      + I A  LR +   + +ITG V  E +LD++F  FCIGK
Sbjct: 444 LRDYKPDVFPDMAIAAAKLRNSVRCIERITGHVSCEDILDVVFKDFCIGK 493


>gi|194337753|ref|YP_002019547.1| tRNA modification GTPase TrmE [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194310230|gb|ACF44930.1| tRNA modification GTPase TrmE [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 473

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/470 (31%), Positives = 242/470 (51%), Gaps = 33/470 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--------PFPRKASLRY 52
           +  ++  + A++T     A++++R+SG   F + + + +KK             +A    
Sbjct: 7   LPRQEAPVAAIATPVGVGALAVLRISGEGVFDIAQKVFRKKNNPNFRFTASKGFRAHFGT 66

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
               +G ++D+ + +VF SP SFT ED  EF  HGG  VV  IL+ L      RLA PGE
Sbjct: 67  VHDSEG-LIDEVVALVFRSPNSFTMEDMVEFTCHGGPVVVQHILKVLL-DEGCRLAEPGE 124

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF NG+IDLL+AE++ ++I + TE   R ++  M G LS       + L    + +
Sbjct: 125 FTRRAFLNGRIDLLQAEAIGEMIHARTESAFRTAVTQMQGTLSLRLDAMRELLLRSCALL 184

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E +LDFSE EDV+  S  ++  ++  L+ ++   +   + G +++ G   VI G  NAGK
Sbjct: 185 ELELDFSE-EDVEFQSRTQLQEELAGLQEELHRLVDSYQHGRLLKEGVATVIAGLPNAGK 243

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           S+L N L  ++ +IV+ +PGTTRD +      E  + +++DTAG+RE  + VE EGI+R+
Sbjct: 244 STLLNVLLGEERSIVSHMPGTTRDYIEECFLYEKTMFRLTDTAGLREGGEEVEHEGIRRS 303

Query: 293 FLEVENADLILLLKEIN----------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
           F ++  ADL++ L +I+           +  +    N   I    K DL +   E    L
Sbjct: 304 FKKISEADLLVYLLDISLESYLDEVPLIRDLLERNSNARMIVAANKIDLATGSEERLQKL 363

Query: 343 I----------SSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLE 391
                      S+  GEGLE L   + +++    K    S+  +  RH   L      L 
Sbjct: 364 RAATGCEVCALSAAKGEGLEALKRLMSTMVEGLDKLHEASVLVTSLRHYEALRNASDALA 423

Query: 392 MAS-LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  L  +    ++IA  LR A   +G+ITG V  E+++++IF +FCIGK
Sbjct: 424 NAQELITRQAETELIAFELRSALDYVGEITGKVVSEEIVNLIFEQFCIGK 473


>gi|88809840|ref|ZP_01125346.1| tRNA modification GTPase [Synechococcus sp. WH 7805]
 gi|88786224|gb|EAR17385.1| tRNA modification GTPase [Synechococcus sp. WH 7805]
          Length = 460

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 136/440 (30%), Positives = 222/440 (50%), Gaps = 19/440 (4%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASL----RYFFGLDGRILDKGLLIVFPSPE 73
             I++IRLSGP      + + +     P ++                +D+ L+++  +P 
Sbjct: 23  GGIAVIRLSGPQAQSAVKAVTRIPGLQPWESHHVLYGHVLAAESDERIDEVLVLLMLAPR 82

Query: 74  SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133
           SFTGED  E H HGG+  V  +L  +   P +R A PGEFS+RA  NG++DL  AE+++D
Sbjct: 83  SFTGEDVVEIHCHGGVIAVQRVLARVLDQPGVRRALPGEFSQRAVLNGRLDLTRAEAISD 142

Query: 134 LISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           L+++ ++   +L+M G+ G +        ++L    S +EA +DF E  D+       +L
Sbjct: 143 LVAARSQRAAQLAMAGVDGGIQKRITALRERLLDQLSELEARVDFEE--DLPPLDGSALL 200

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
            ++  ++  +   +  G++G  +R G ++ ++G  N GKSSL N L++++ AIVTD+PGT
Sbjct: 201 EELQMVRCQLQQLVEDGQVGAALRQGLRVALVGRPNVGKSSLLNRLSRRERAIVTDLPGT 260

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----- 308
           TRD+L  ++ LEG  + + DTAGIR T D VE+ GI R+   + +ADL+LLL ++     
Sbjct: 261 TRDLLESEIVLEGVPITLLDTAGIRATTDAVEQLGIARSHDALASADLVLLLFDLSVGWT 320

Query: 309 --NSKKEISFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLEELINKIKS 360
             +       P  +  + +G K DL  +       +   D  +S+ TG G  EL+  +  
Sbjct: 321 PDDEALRQRVPDAVPHLLVGNKVDLAGSDALARLSSAAVDVCLSANTGAGEAELVQAMLK 380

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
                         + ++              A +       D    +LR A  SLG+IT
Sbjct: 381 RCGALTDGSLLLSLNQRQADLAQQAADALARSAQVAADGLPWDFWTIDLRQAIRSLGEIT 440

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G    E +LD IFS+FCIGK
Sbjct: 441 GEELTESVLDRIFSRFCIGK 460


>gi|254423905|ref|ZP_05037623.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7335]
 gi|196191394|gb|EDX86358.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7335]
          Length = 459

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 234/457 (51%), Gaps = 22/457 (4%)

Query: 3   HEKETIFAVSTGALP--SAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGLDG 58
           H+ ETI A++T  +P   ++ I+RLSG     + + +     ++P+     L        
Sbjct: 6   HQAETIVAIATAIVPEQGSVGIVRLSGLDAIAIAKQLFHAPGRQPWESHRILYGHIHSQQ 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ LL++  SP S+T ED  EFH HGGI  V  +  +L      RLA PGEF+ RAF
Sbjct: 66  TIVDEALLLLMESPRSYTREDVVEFHCHGGIMAVQQV-LQLCLQQGARLAQPGEFTLRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AES+ADL+ +++    + ++ G+ G+L+ +  Q   +   + + IEA +DF
Sbjct: 125 LNGRLDLTQAESVADLVGAQSPQAAQTALMGIRGKLAEVIRQLRSQCLDVLAEIEARVDF 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           ++  D+   +  +V + +  + + ++  +     GE++R G K+ I+G  N GKSSL NA
Sbjct: 185 AD--DLPPINEDDVRSRLQSIHHQLAQVLLTADQGELLRTGLKVAIIGQPNVGKSSLLNA 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            +K D AIVT++PGTTRDV+   L + G  +++ DTAGI    + VEK GI+R+    ++
Sbjct: 243 WSKSDRAIVTNLPGTTRDVVESQLIVGGIPIQVLDTAGIHAATNEVEKIGIERSLTAAQS 302

Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST-------YTEEYDHLISS 345
           ADL+LL  +         +      K+   I +  K DL +                 ++
Sbjct: 303 ADLVLLTIDATVGWTAADQALYEQIKDTPHIIVVNKIDLLADSHPTTLPLPHSPIVHTAA 362

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403
               G+ EL   I S  +          I  ++R    L+Q    +            LD
Sbjct: 363 AVNHGIPELEAAILSAANAGDLTAANTDIAINQRQAAALTQADIAIAQVEQTIANALPLD 422

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +LR+A  +LG++TG    E +LD IFS+FCIGK
Sbjct: 423 FWTIDLRIAIHALGEVTGEEITESMLDEIFSRFCIGK 459


>gi|315284189|ref|ZP_07872091.1| tRNA modification GTPase TrmE [Listeria marthii FSL S4-120]
 gi|313612167|gb|EFR86407.1| tRNA modification GTPase TrmE [Listeria marthii FSL S4-120]
          Length = 425

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 131/405 (32%), Positives = 219/405 (54%), Gaps = 18/405 (4%)

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
               DG ++++ +  V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGE
Sbjct: 22  LKDEDGEVIEEVMATVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGE 80

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NG+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +
Sbjct: 81  FTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQV 140

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E ++D+ E +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GK
Sbjct: 141 EVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGK 200

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N L +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+
Sbjct: 201 SSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERS 260

Query: 293 FLEVENADLILLLK----EINSKKEISF--PKNIDFIFIGTKSDLYSTYT---------E 337
              + +AD ILL+     E+ ++ E  F      +++ +  K+DL +            E
Sbjct: 261 RKALADADFILLVLNQNEELTAEDEALFEAAAGHNYVVVLNKTDLETKLDIEKVREIAGE 320

Query: 338 EYDHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL- 395
                 S    EGLE L   IK++           +  S+ RH+  L Q +  L   +  
Sbjct: 321 NPIVATSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALDALNAVTTG 380

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    +DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 381 IQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 425


>gi|225459366|ref|XP_002285809.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|302141924|emb|CBI19127.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/476 (30%), Positives = 230/476 (48%), Gaps = 45/476 (9%)

Query: 7   TIFAVSTGAL--PSAISIIRLSGPSCFQVCEFICKKKK---------------PFPRKAS 49
           TI A+ T     PSA+ I+RLSGP    +   + +  +               P      
Sbjct: 99  TIAAIVTSLGGPPSAVGIVRLSGPEAVAIVARVFRPARRNKGKTLGSGSGSWRPTSHVVE 158

Query: 50  LRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109
                   G ++D+ L I   +P S+T ED  E   HG    +  +L    +    RLA 
Sbjct: 159 YGVVLDHHGNVVDEVLAIPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLES-GARLAE 217

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+ RAF NG++DL +AE++  LIS+++      ++ G+ G  SSL      +   + 
Sbjct: 218 PGEFTLRAFLNGRLDLSQAENVGKLISAKSIAAADAALAGIQGGFSSLVRSLRIQCIELL 277

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           + IEA LDF +  ++       +++ I  +  D+ + +      +++++G +I I+G  N
Sbjct: 278 TEIEARLDFDD--EMPPLDLNLIMDKIHSMSQDVENALETANYDQLLQSGLQIAIIGRPN 335

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKSSL NA +K + AIVT+I GTTRDV+   + + G  V + DTAGIRETDDIVEK G+
Sbjct: 336 VGKSSLLNAWSKSERAIVTEIAGTTRDVVEASVSIHGIPVTLLDTAGIRETDDIVEKIGV 395

Query: 290 KRTFLEVENADLILLLK---EINSKKEISF-----------PKNIDFIFIGTKSDLYSTY 335
           +R+     +AD+I++     +  + ++                +   I +  K D   + 
Sbjct: 396 ERSEAVAISADVIIMTISALDGWTSQDTKLFNRIISNKKFVESSTPVILVVNKIDCAPSA 455

Query: 336 TEEYDHLISSF---------TGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQ 385
             E     +SF         TG+G+ +L + I  I+  NK          ++R    L +
Sbjct: 456 CTELFMEGNSFSKHIFTCAVTGQGISDLESAIIEIVGLNKIPAGGRRWTVNQRQCEQLVR 515

Query: 386 TVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           T   L    S  E++  LD    +LR A+++LG+I+G    E++L  IF KFCIGK
Sbjct: 516 TKEALARLISSIEEEMPLDFWTIDLREAALALGQISGEDISEEVLTNIFGKFCIGK 571


>gi|259417693|ref|ZP_05741612.1| tRNA modification GTPase TrmE [Silicibacter sp. TrichCH4B]
 gi|259346599|gb|EEW58413.1| tRNA modification GTPase TrmE [Silicibacter sp. TrichCH4B]
          Length = 428

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/437 (36%), Positives = 248/437 (56%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T    + +++IR+SGP+  QV + + ++  P  R          +G+ILD+ L
Sbjct: 2   DTIFALATSQGKAGVAVIRVSGPNAIQVGKNLTRRTLP-ARGMIFSKLKDKEGQILDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +P+SFTGE+  EF +HG  AVV+ ++  L      RLA+PGEF+RRA +NGK+DL
Sbjct: 61  VLSFTAPDSFTGENIVEFQIHGSTAVVSAVMSALEVSNLARLADPGEFTRRALDNGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ +   +SG L +L  +W   L    S IE  +DF++ E+V 
Sbjct: 121 TQVEGLADLIDAETEAQRKQAQVILSGALGALADRWRTDLIRAASLIEVTIDFAD-EEVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV   +  +  DI   +    + E IR G+++ I+G  N GKS+L NALA ++ A
Sbjct: 180 VDVTPEVGALLFGVFTDIQKEVQGVSIAERIREGFEVAIVGSPNVGKSTLLNALAGRNAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRDV+ + +DL G  V + DTAG+R+TDD VE  GI+        AD+ + L
Sbjct: 240 ITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRDTDDHVEGIGIQLAQERANAADIRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E N   ++ F ++ D   +  K+D             S  TG+G+++L++ I S L N+
Sbjct: 300 AEENETFDVPF-RDGDLSLLP-KADERDATRGAI----SGKTGQGIDDLVSHIASTLKNR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCV 423
                  I +  RH   + + +  L+ A    +      D+ AE++R A  +L  + G +
Sbjct: 354 STH--AGIATRARHRDAMKRALESLQRAIDVLQQGPEFYDLAAEDMRSAIRALELLVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LLD IFS FC+GK
Sbjct: 412 DVENLLDEIFSSFCLGK 428


>gi|205829219|sp|B1GYZ9|MNME_UNCTG RecName: Full=tRNA modification GTPase mnmE
          Length = 456

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/461 (35%), Positives = 248/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNH-EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           MN+ +++TI A+ST A  SAI++IRLSG + FQ+   I K      ++    Y       
Sbjct: 1   MNYLKEDTIAALSTAAGKSAIAVIRLSGENSFQIIGKIFKTHSKPEQQVKHGYITD-GIE 59

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
             D+ L   F +P ++TGE+  E   HG   ++N IL  L K    R A PGEF+ RAF 
Sbjct: 60  KKDEVLCTFFKAPHTYTGENLVEIAAHGNPVIINEILNLLYK-NGARPAGPGEFTYRAFL 118

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N K++L EAE++  LI+S+TEM  + ++  +SGE SS      D +T++ + +EA+LD  
Sbjct: 119 NDKMNLAEAEAVCALITSKTEMSAKAALNSLSGEFSSKIKNIRDAVTNLIASMEANLDHP 178

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + ED    S  E L+       D+ + ++  K G+I++ G K+VI+G  NAGKSSL NA+
Sbjct: 179 D-EDNMFLSRSEKLSRFDSCIKDVQNLLNSYKTGKILQYGIKVVIIGKPNAGKSSLLNAI 237

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVEN 298
             K+ AIVTDI GTT D +   +D  G  + I+DTAGIRE +++++E  G  +T   V  
Sbjct: 238 LGKNRAIVTDIAGTTTDTVEETIDCCGIPLIITDTAGIREHSENLIEILGQAKTREAVCK 297

Query: 299 ADLILLLKEINSKKEISFPK----------NIDFIFIGTKSDLYSTYT-------EEYDH 341
           AD+++ L + +S+ + +  K          NI  I +  KSDL   ++        +   
Sbjct: 298 ADILIWLFDSSSEPDCNDAKIADFLKKSDLNIPIICVLNKSDLPPLFSSSLLNRENKVKV 357

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            IS+ TG G+ +L+++I  I      K  + +  + RH   L  T+  L     SL+ KD
Sbjct: 358 KISAKTGVGIADLLDEIVKIAGVSESKNDYLMI-NTRHFILLQNTLESLIRTKQSLSAKD 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +I       A +SL +I G    + +LD IFS FCIGK
Sbjct: 417 AD-EIACFEALSAQISLNEILGINVKQDILDTIFSTFCIGK 456


>gi|118497883|ref|YP_898933.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           novicida U112]
 gi|194323857|ref|ZP_03057633.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           novicida FTE]
 gi|166991111|sp|A0Q7G4|MNME_FRATN RecName: Full=tRNA modification GTPase mnmE
 gi|118423789|gb|ABK90179.1| GTPase of unknown function [Francisella novicida U112]
 gi|194322221|gb|EDX19703.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           novicida FTE]
          Length = 450

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 239/464 (51%), Gaps = 41/464 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGP----------SCFQVCEFICKKKKPFPRKASLRY 52
           + K+TI A++T                             + E + KK+   PR A+   
Sbjct: 2   YTKDTIVAIATPQGN----------GGIGIIRISGIDALAIAEKLTKKQL-KPRYATFCN 50

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
            +  D  I+D G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GE
Sbjct: 51  VYN-DNEIIDHGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGE 108

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+ RAF N K+DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++
Sbjct: 109 FTERAFLNNKLDLTQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYV 168

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +DF E E++     +++ + +  +   I +  +  K G I+  G  ++++G  NAGK
Sbjct: 169 EASIDFPE-EEINFLEDQKIHSSLEEIYKVILAVKNSCKQGVILAEGITLILVGKPNAGK 227

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR 
Sbjct: 228 SSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRA 287

Query: 293 FLEVENADLILLLKE--------INSKKEI------SFPKNIDFIFIGTKSDLYSTYTEE 338
             +++ AD +L + +         +  KEI        PK+ID  ++  K DL       
Sbjct: 288 IKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHN 347

Query: 339 YDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           + +   IS+    G+++L   I + +     +      + +RH+  ++    ++++A   
Sbjct: 348 HANHIYISAENNIGIDKLKEHILNKV-GYTNQNESIYTARERHVTAINNAFEHIKLAKEQ 406

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 407 LELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|325270021|ref|ZP_08136629.1| thiophene and furan oxidation protein ThdF [Prevotella multiformis
           DSM 16608]
 gi|324987606|gb|EGC19581.1| thiophene and furan oxidation protein ThdF [Prevotella multiformis
           DSM 16608]
          Length = 483

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 136/452 (30%), Positives = 225/452 (49%), Gaps = 20/452 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRY--FFGLDGRI 60
            I A +T     AI IIR+SG    +  + I +  K  P    R  +L Y      + + 
Sbjct: 34  PICAPATQPG-GAIGIIRVSGVGAIEATDRIFRGVKGRPLAEARGNTLHYGEILDKEKKA 92

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  L+ VF +P S+TGEDS E   HG + V+N ++  L      R A PGEF++RA+ N
Sbjct: 93  VDDVLVSVFRAPHSYTGEDSTEISCHGSVYVLNQVM-RLLIDAGCRQAQPGEFTQRAYLN 151

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      +L++  + G  SS   +  ++L  + S +E +LDFS+
Sbjct: 152 GKMDLSQAEAVADLITASNRASHQLALSQLKGHFSSELSRLREQLLRMTSLLELELDFSD 211

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+++     E+      + + I+S     + G I++ G  + I+G +N GKS+L N L 
Sbjct: 212 HEELEFADRAELSALAAKIHDRIASLTKSFETGNILKKGVPVAIIGKTNVGKSTLLNCLL 271

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV++I GTTRDV+    ++ G   +  DTAG+R TDD +E+ GI+R + +++ A 
Sbjct: 272 HEEKAIVSNIHGTTRDVIEDTTEINGVTFRFIDTAGLRHTDDQIERLGIRRAYEKMKEAA 331

Query: 301 LILLLKEI-----NSKKEISFPKNIDFIFIGTKSD-----LYSTYTEEYDHLISSFTGEG 350
           ++L + +        ++     +    I +  K D       ST  E     IS+   + 
Sbjct: 332 VVLWVNDRQPTIEECREMRHLAEGKKLITVFNKMDDMPVRPGSTGLEAQTVYISAKLKQN 391

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENL 409
           +  L   I +            I +  RH   L       L +    +     D+++E+L
Sbjct: 392 IAGLETAIYNAAGIPEIDENSIIVTSVRHYDALVHADASILRVIDALQLGLSGDLVSEDL 451

Query: 410 RLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
           R+    L  IT G +   ++LD IF  FCIGK
Sbjct: 452 RICLDQLADITGGQITTHEVLDNIFRHFCIGK 483


>gi|161760545|ref|NP_907463.2| tRNA modification GTPase TrmE [Wolinella succinogenes DSM 1740]
 gi|205829217|sp|Q7M901|MNME_WOLSU RecName: Full=tRNA modification GTPase mnmE
          Length = 456

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/453 (30%), Positives = 238/453 (52%), Gaps = 17/453 (3%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
           +   ETI A+ST +   A+++++LSG    ++   + ++    PR A+L   +  +  ++
Sbjct: 7   SSTPETIIALSTPSGAGALAVVKLSGSRALEIALKLSRRDHLQPRHATLANLWNREDEMM 66

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ +LI F +P S+T E+  E   HGG  +   I++E   +   R+A  GEF+ RAF NG
Sbjct: 67  DEAILIYFKAPHSYTAEEVVEIQCHGGTLIARKIIQEALAL-GARVARAGEFTYRAFLNG 125

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++  LI ++++   ++ ++ + GEL          L  I ++ E  +D++E 
Sbjct: 126 RIDLSQAEAIGKLIEAKSDESYKVLLKQLKGELGRYVEGVRGSLVEILAYAEVSIDYAE- 184

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+ +     ++  I  +  D+       K    +  GYK+ I+G  N GKSSL NAL  
Sbjct: 185 EDLPSDLEARMVEKIERIAEDLERIYQGSKRRSSLVEGYKLAIIGRPNVGKSSLLNALLL 244

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            + AIV+DIPGTTRD +   L L  + V+I DTAGIRE  D +EK GI+RT L ++ +D+
Sbjct: 245 WERAIVSDIPGTTRDTIEESLHLGNHWVRIVDTAGIREAQDAIEKIGIERTLLALKESDM 304

Query: 302 ILLLKEIN-----SKKEI-----SFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSFT 347
           +L L + +       ++I     +  +N   + +  KSDL         E Y H   S  
Sbjct: 305 VLALFDSSQSLSPEDEQIKELLRAHQENRRILVLFNKSDLSRELQDSELESYPHRYISAK 364

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
             G+EEL++ + S L  +       + + +R L  +   +  L+ A     +  L++ A 
Sbjct: 365 EGGVEELLSLLASWLDEQGGGEEL-MLTSERQLLCVKSALGELKEARDRLIEGELELFAY 423

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++ A   L  IT   +  +LLD++F +FC+GK
Sbjct: 424 HIQGALKELSLITRPYETSELLDVMFGQFCLGK 456


>gi|72080548|ref|YP_287606.1| tRNA modification GTPase TrmE [Mycoplasma hyopneumoniae 7448]
 gi|123645152|sp|Q4A8F6|MNME_MYCH7 RecName: Full=tRNA modification GTPase mnmE
 gi|71913672|gb|AAZ53583.1| tRNA modification GTPase ThdF/TrmE [Mycoplasma hyopneumoniae 7448]
          Length = 442

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/442 (36%), Positives = 250/442 (56%), Gaps = 8/442 (1%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A+++G +  AISIIR+SGP+ F++ E I   K     + +  +    D + +D+ 
Sbjct: 3   SDTICAIASGQINQAISIIRISGPNAFKIMEKIFLGKVGKSMEITFGWIHD-DNQKIDQV 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F   ++F GED+ E + HGG+   N ILE + K    RLANPGEFS RAF NGKID
Sbjct: 62  LVLWFAGNKNFVGEDTVEINAHGGVLNTNLILELILKTKLARLANPGEFSLRAFLNGKID 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++A+++ DLI +E ++Q + ++    G+ S+     I+K+  I   IE ++D+ E +DV
Sbjct: 122 LVKAQAINDLIHAEVKVQHQAALNQFLGKSSNFIKNLIEKIEEIIGIIEVNIDYPEYDDV 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +S  +L  I  L  D    I       +I  G K  ++G  N+GKSSL N L  ++ 
Sbjct: 182 EILTSDVLLPKINQLLADFDQLIKIANNSRLIYQGIKTCLVGAPNSGKSSLLNILINENK 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++IPGTTRDV+  +  L+G L K+ DTAGIR+T + +E+ GI++++  ++ ADLIL 
Sbjct: 242 AIISEIPGTTRDVVEGNFVLDGLLFKLFDTAGIRKTTEKIEQIGIEKSYESIKKADLILH 301

Query: 305 LKEINSKKEISF------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           + + + K   +         +  ++ I  KSDL     E  D ++ S   + +E L+ KI
Sbjct: 302 IIDASEKNRQNLDLKAKARPDQVYLKIYNKSDLLENQEEFKDEILISAKYQKIENLLEKI 361

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           KSI +   K   F   S +     L + +  L+  +  E   G +I   +LR+A   L  
Sbjct: 362 KSIFAFLGKNKEFVANSFQISQIELGK-LAILDAKTSLESGFGPEIAIVDLRIAWKELKT 420

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           I G VD E LLD IFSKFC+GK
Sbjct: 421 IFGRVDDENLLDSIFSKFCLGK 442


>gi|34540645|ref|NP_905124.1| tRNA modification GTPase TrmE [Porphyromonas gingivalis W83]
 gi|34396959|gb|AAQ66023.1| thiophene and furan oxidation protein ThdF [Porphyromonas
           gingivalis W83]
          Length = 518

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/472 (31%), Positives = 241/472 (51%), Gaps = 36/472 (7%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKP-----FPRKASLRYFF 54
           +  K+TI AV+T      I++IR+SG   F++    F+ + K        PR A      
Sbjct: 50  SFNKDTICAVATAPGVGGIAVIRVSGADAFRLVSPLFLYRGKAIDLSGAKPRTALYGEIM 109

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             D  ++D+ +L  F  P SFT E + E   HG I +   ILE L      RLA PGEF+
Sbjct: 110 EAD-ELIDEVILTCFHGPHSFTAEHTVEIACHGSIYIRRRILEALI-NQGCRLAQPGEFT 167

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRA+ NG++DL  AE++AD+I+SE++ Q +++M+ + G  S       ++L  +   +E 
Sbjct: 168 RRAYLNGRMDLSSAEAVADIIASESKAQHQMAMKQLRGGYSEELNALREELLRLTGLMEL 227

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDF E EDV+     E+L     ++  +   I   +LG  ++ G  + I+G +N GKS+
Sbjct: 228 ELDFPE-EDVEFADRTELLALCDQIELKLKKLIDSYRLGNAVKRGIPVAIVGTTNVGKST 286

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIV+DI GTTRD +   + + GYL +  DTAG+RET+D +E  GI+R+  
Sbjct: 287 LLNTLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTAGLRETEDTIESLGIERSRS 346

Query: 295 EVENADLILLLKE---INSKKEISFPKNID-------FIFIGTKSDLYSTY--------- 335
           +++ AD+IL + +   I+   ++ + K+I         I +  KS+  +           
Sbjct: 347 KIKEADIILAVVDGTRISEANQLDYIKSIWDEREERTLILLVNKSESLAEADRIGLSETL 406

Query: 336 -----TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                T      IS+  G G++EL  ++  I+          I S+ RH   L +    L
Sbjct: 407 QTKLSTPTKPIFISAREGRGIDELKGELTQIMETSGANEADLIVSNARHHQLLREAFDAL 466

Query: 391 EMASLN-EKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440
               L  +     D++  +LR A  S+G+ITG  +  +  L  IF+ FCIGK
Sbjct: 467 RRMRLGFDMGLSTDLLTLDLRHAITSIGEITGREITSDDTLHYIFAHFCIGK 518


>gi|114568076|ref|YP_755230.1| GTPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|122317083|sp|Q0ATU5|MNME_SYNWW RecName: Full=tRNA modification GTPase mnmE
 gi|114339011|gb|ABI69859.1| tRNA modification GTPase trmE [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 459

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 146/459 (31%), Positives = 231/459 (50%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-------KKPFPRKASLRYFFGLDG 58
           + I A+ST      I+I+RLSG    +  E I K                SL +      
Sbjct: 4   DDIAAISTAPGEGGIAIVRLSGNDVIEKVERIFKPYRAGIKLSDKEGYSLSLGWLCDEKM 63

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            I+D+ LL +  +P S+TGED  E + HGG       LE +     +RLA PGEF+RRAF
Sbjct: 64  EIIDEVLLGLMRAPRSYTGEDVVEINCHGGTLPARRCLEAVM-WQGVRLAQPGEFTRRAF 122

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++D+ +AE++ ++I ++TE    L+++ ++G  S       D++  + + +EA LDF
Sbjct: 123 LNGRLDVSQAEAVIEVIRAKTERGMNLALKQLAGRNSQEINLLEDQMIEVNAMLEASLDF 182

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            +  +V +         +  +KN I   +  G+  EI R G  + I G  N GKSSL NA
Sbjct: 183 PD--EVGDLDYSAAQGKLQEVKNRIDKLLLAGERAEIYREGINVAICGKPNVGKSSLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +K+ AIVT IPGTTRD++   +++ G  VK+ DTAGIR T+D+VE+ GI+R+   +  
Sbjct: 241 LLRKEKAIVTSIPGTTRDIIEDYINIRGIPVKLKDTAGIRSTEDLVERIGIERSQEVISE 300

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           ADL+L + ++        +K     +  + I +  K DL      E +            
Sbjct: 301 ADLVLFILDVGTGIDQEDRKIYEKIEKKNKIVLVNKEDLEEKNISEAELEQLFPGVKIVR 360

Query: 344 -SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            S     GLEEL   I K++LS + +     +  + R    L    R++E +        
Sbjct: 361 GSIIEETGLEELEESIEKAVLSGQLQSDDMEVMINLRQKNALLTAKRHIEESLAAMGKVS 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD +  ++  A  +LG+I+G    E++++ IF  FCIGK
Sbjct: 421 LDCLGVDIWGALEALGEISGKNLKEEVIERIFHDFCIGK 459


>gi|32490761|ref|NP_871015.1| tRNA modification GTPase TrmE [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340464|sp|Q8D3I9|MNME_WIGBR RecName: Full=tRNA modification GTPase mnmE
 gi|25165967|dbj|BAC24158.1| thdF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 453

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/454 (35%), Positives = 241/454 (53%), Gaps = 20/454 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           +K++I A++T      I IIR+SG    ++   I  K+ P  ++A    F+  +G  LD+
Sbjct: 3   KKDSIVAIATPPGKGGIGIIRVSGNLSVKIA-KIFLKRLPKEKQAEYIPFYSKNGNTLDQ 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + F SP+S TGED  EF  HG    +N +L+E+  +  +RLA PGEF  RAF NGKI
Sbjct: 62  GIALFFKSPKSLTGEDVLEFQAHGSPVALNFLLQEILSIKGMRLAKPGEFLERAFINGKI 121

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE+++DLI+S +    + ++  + G  S      I  +  +R  IE D+DFSE E+
Sbjct: 122 DLIQAEAISDLINSCSIQAAKSALISIRGYFSKKINNLILSIKKLRMKIEVDIDFSE-EN 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
               S + + +D+  +  +I+        G I++ G KIVI+G  N+GKSS+FN L+  +
Sbjct: 181 FNKISIECIKHDLEKIILNINKIQCSFNRGAILKEGSKIVIIGKPNSGKSSIFNILSGNN 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVT I GTTRD+L   + L+   + I DTAG+R+TDD +EK GI R   E++ +D IL
Sbjct: 241 NAIVTSIEGTTRDILHEHIYLDNIPLHIYDTAGLRKTDDKIEKIGILRALKEIKTSDHIL 300

Query: 304 LLKEINSKKE----ISFPK-----NIDFIFIGTKSDLYSTYTEEYDHLI------SSFTG 348
           L+ + N  K     + +PK           I  K DL     E            S++TG
Sbjct: 301 LIVDSNIDKSNDINLIWPKFNSNIKNKITIIRNKIDLSKEIPEIKIFKKNNIISLSAYTG 360

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAE 407
           EG++ LI  +K  L+         I +  RH+  + +    +  A        L D ++E
Sbjct: 361 EGVDILIKYLKD-LNCLLLNEEGCILARTRHILEIKKAKNNILNAKKLLNKYNLSDFVSE 419

Query: 408 NLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440
            LR+A   L KI G   +    L+ IFS FCIGK
Sbjct: 420 ELRIAQSCLEKILGINNNSNDFLNEIFSNFCIGK 453


>gi|45550813|ref|NP_651251.3| CG18528 [Drosophila melanogaster]
 gi|17946252|gb|AAL49166.1| RE57978p [Drosophila melanogaster]
 gi|17946567|gb|AAL49314.1| RH13838p [Drosophila melanogaster]
 gi|45446626|gb|AAF56288.3| CG18528 [Drosophila melanogaster]
          Length = 493

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/470 (33%), Positives = 254/470 (54%), Gaps = 36/470 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGL-DGRILDK 63
           TI+++S+G +   +S+IR+SGP   +    I   K+  P  R+A L+ F+      ++D+
Sbjct: 24  TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYEPKARQAYLKSFYHPASKEMIDR 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGEDS EF VHG +AV+  +L+ L K+  LR A PGEF++RAF  GK+
Sbjct: 84  GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L+ LY  W  +L    + +EA +DF+EEE 
Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  +K +I  H+S  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 204 IEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVTD  GTTRD++    +  GY V  SDTAG+R  T D +E+EG++R    +  +DLI
Sbjct: 264 VSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKNCLVQSDLI 323

Query: 303 LLLKEINSKK-----------------EISFPKNID----FIFIGTKSD-LYSTYTEEYD 340
           LLL E  +                   E+  P ++        +  K+D L     ++ D
Sbjct: 324 LLLAEAKNIAQLTHDDAVAPFVDSYLGELDIPLDMCSGKRLQLVANKTDTLTDEEHQQLD 383

Query: 341 H-----LISSFTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA 393
                  IS    + +   +  ++  L       +      ++ R+   L + +  +++ 
Sbjct: 384 KLSNVLAISCHKPDKMPVFLGSLEKQLQELCGEPRAENPRITNTRYRQQLERCIENIDIF 443

Query: 394 SLN---EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +   +    + I A  LR +   + +ITG +  E +LD++F  FCIGK
Sbjct: 444 LRDYRPDVYPDMAIAASKLRNSVRCIERITGHISCEDILDVVFKDFCIGK 493


>gi|126730104|ref|ZP_01745916.1| tRNA modification GTPase [Sagittula stellata E-37]
 gi|126709484|gb|EBA08538.1| tRNA modification GTPase [Sagittula stellata E-37]
          Length = 427

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 166/437 (37%), Positives = 249/437 (56%), Gaps = 13/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    S ++++R+SG   ++  + +     P PR+  LR      G  +DK +
Sbjct: 2   DTIFALASAPGRSGVAVVRVSGDRSWEAVKALAGS-VPEPRRMVLRTLRDTSGAHVDKAM 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++VF +  SFTGE+SAEFH+HG IAVV  IL EL+ +   R A PGEF+RRA ENG +D 
Sbjct: 61  VVVFAAGASFTGEESAEFHLHGSIAVVRAILLELSLLEGCRPAQPGEFTRRALENGCMDF 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E+LADLI +ETE QR+ ++  +SG LS    +W  KL    S +E  +DF + EDV 
Sbjct: 121 TQVEALADLIEAETEGQRKQALAVLSGALSGRVSEWRQKLVRAASLLEVTIDFVD-EDVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV+  +  + +DI + +      E +R G+++ I+G  NAGKS+L N LA +D A
Sbjct: 180 VDVAGEVVGLLKDVLSDIQAELRGLDAAERVRMGFEVAIVGPPNAGKSTLLNNLAGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++I GTTRDV+ + +D+ G  V   DTAG+RET+D VE+ GI       E ADL + L
Sbjct: 240 ITSEIAGTTRDVIEVRMDVGGLPVTFLDTAGLRETEDPVERLGIDLARRRAEAADLRVHL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E   + EI         +   K D     +   D  +S  TG G+  ++++I   L  +
Sbjct: 300 VERGGQPEIGVRSGDVVRW--AKDD-----SGSLDDGLSGRTGYGVARVLSEIAEELLER 352

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCV 423
              +  S+ S +RH   L ++  +LE A   L      +DI++E++RL    L  + G V
Sbjct: 353 TAGM--SLTSRERHRDSLVRSQMFLERAVSGLESGMSEVDILSEDIRLGIRQLEILVGRV 410

Query: 424 DVEQLLDIIFSKFCIGK 440
           +VE LLD IFS FCIGK
Sbjct: 411 EVEHLLDEIFSSFCIGK 427


>gi|89256498|ref|YP_513860.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           holarctica LVS]
 gi|156502609|ref|YP_001428674.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|122500633|sp|Q2A342|MNME_FRATH RecName: Full=tRNA modification GTPase mnmE
 gi|166991110|sp|A7NCL5|MNME_FRATF RecName: Full=tRNA modification GTPase mnmE
 gi|89144329|emb|CAJ79616.1| tRNA modification GTPase trmE family protein [Francisella
           tularensis subsp. holarctica LVS]
 gi|156253212|gb|ABU61718.1| tRNA modification GTPase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 450

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 240/464 (51%), Gaps = 41/464 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGP----------SCFQVCEFICKKKKPFPRKASLRY 52
           + K+TI A++T                            ++ E + KK+   PR A+   
Sbjct: 2   YTKDTIVAIATPQGN----------GGIGIIRISGIDALEIAEKLTKKQL-KPRYATFCN 50

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
            +  D  I+D G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GE
Sbjct: 51  VYN-DNEIIDHGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGE 108

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+ RAF N K+DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++
Sbjct: 109 FTERAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYV 168

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +DF E E++     +++ + +  +   I +  +  K G I+  G  ++++G  NAGK
Sbjct: 169 EASIDFPE-EEINFLEDQKIHSSLEEIYKVILAIKNSCKQGVILAEGITLILVGKPNAGK 227

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR 
Sbjct: 228 SSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRA 287

Query: 293 FLEVENADLILLLKE--------INSKKEI------SFPKNIDFIFIGTKSDLYSTYTEE 338
             +++ AD +L + +         +  KEI        PK+ID  ++  K DL       
Sbjct: 288 IKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHN 347

Query: 339 YDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           + +   IS+    G+++L   I + +     +      + +RH+  ++    ++++A   
Sbjct: 348 HANHIYISAENNIGIDKLKEHILNKV-GYTNQNESIYTARERHVTAINNAFEHIKLAKEQ 406

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 407 LELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|218781965|ref|YP_002433283.1| tRNA modification GTPase TrmE [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763349|gb|ACL05815.1| tRNA modification GTPase TrmE [Desulfatibacillum alkenivorans
           AK-01]
          Length = 463

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/463 (30%), Positives = 225/463 (48%), Gaps = 27/463 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRYFFG 55
           MN  + TI A++T      I +IR+SGP    + + I +          P+   L     
Sbjct: 5   MNLSQ-TIAAIATPPGVGGIGVIRISGPLSSSILKSIFQPAHSSFDIWPPQAYKLIRGKI 63

Query: 56  LDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
           +D +   + D+ L +  P P ++TGED AE   HGG  V++ +LE +      RLA PGE
Sbjct: 64  VDPKTTAVKDEVLAVFMPGPGTYTGEDVAEIQGHGGPVVLSAVLETVL-SQGARLAEPGE 122

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF NG++DL +AE++ DLI + T    + +   + G L S     +D +   R+ I
Sbjct: 123 FTRRAFLNGRMDLSQAEAVVDLIHARTSRAAKTAAAHVGGALKSRVEGILDSIMECRAQI 182

Query: 173 EADLDFSEEEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           EA LDFS+  D  +  +K +L      + + +       +LG+    G +  I+G  N G
Sbjct: 183 EAALDFSD--DTGDGETKWILAKLDQGVISPLKELAEAAELGKAHMEGLRAAIVGRPNVG 240

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NALA ++ +IVT+ PG TRDV+   + + G    +SDTAG+R + D VE  G++R
Sbjct: 241 KSSLMNALAGQERSIVTETPGATRDVIREPVLIRGLHFTLSDTAGLRTSSDAVEMIGVQR 300

Query: 292 TFLEVENADLILLLKEINS-----KKEISFPKNI---DFIFIGTKSDLY-----STYTEE 338
               +  +DL++L+ E  S      +E+           + +  K DL+     S   + 
Sbjct: 301 AKDAMGESDLVMLVVEAGSDLSPEDQELLHQAEHSCNRVLMVYNKMDLHPGFIPSPVRDY 360

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
               +S+ TG+GL+ L   +++ L    +      I  + R    L   +     A    
Sbjct: 361 APVAVSAKTGQGLDGLRRAMENSLRQGRELDAAPGIIPNLRQKGALESALESATEARSRI 420

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   ++ A ++  A  SL ++ G      +LD IFS FCIGK
Sbjct: 421 LEEAWELAAFDMEEAQKSLEQVLGLGVSPDILDRIFSDFCIGK 463


>gi|195573463|ref|XP_002104713.1| GD18297 [Drosophila simulans]
 gi|194200640|gb|EDX14216.1| GD18297 [Drosophila simulans]
          Length = 493

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/470 (34%), Positives = 255/470 (54%), Gaps = 36/470 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGL-DGRILDK 63
           TI+++S+G +   +S+IR+SGP   +    I   K+  P  R+A L+ F+      ++D+
Sbjct: 24  TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYEPKARQAYLKSFYHPASKEMIDR 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGEDS EF VHG +AV+  +L+ L K+  LR A PGEF++RAF  GK+
Sbjct: 84  GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L+ LY  W  +L    + +EA +DF+EEE 
Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  +K +I  H+S  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 204 IEGGIILQLGKELKAVKLEIREHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVTD  GTTRD++    +  GY V  SDTAG+R  T D +E+EG++R    +  +DLI
Sbjct: 264 VSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKNCLVQSDLI 323

Query: 303 LLLKEI-----------------NSKKEISFPKNID----FIFIGTKSD-LYSTYTEEYD 340
           LLL E                  N   E+  P ++        +  K+D L     ++ D
Sbjct: 324 LLLAEAKNIAHLTHDDAVAPFVDNYLGELDIPLDMCSGKRLQLVANKTDTLTEEEHQQLD 383

Query: 341 H-----LISSFTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA 393
                  IS    + +  L+  ++  L       +      ++ R+   L + +  +++ 
Sbjct: 384 KLSNVLAISCHKPDKMPVLLGSLEKQLQELCGEPRAENPRITNTRYRQQLERCIENIDIF 443

Query: 394 SLN---EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +   +    + I A  LR +   + +ITG +  E +LD++F  FCIGK
Sbjct: 444 LRDYRPDVYPDMAIAASKLRNSVRCIERITGHISCEDILDVVFKDFCIGK 493


>gi|189485762|ref|YP_001956703.1| tRNA modification GTPase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287721|dbj|BAG14242.1| tRNA modification GTPase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 471

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/461 (35%), Positives = 248/461 (53%), Gaps = 26/461 (5%)

Query: 1   MNH-EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           MN+ +++TI A+ST A  SAI++IRLSG + FQ+   I K      ++    Y       
Sbjct: 16  MNYLKEDTIAALSTAAGKSAIAVIRLSGENSFQIIGKIFKTHSKPEQQVKHGYITD-GIE 74

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
             D+ L   F +P ++TGE+  E   HG   ++N IL  L K    R A PGEF+ RAF 
Sbjct: 75  KKDEVLCTFFKAPHTYTGENLVEIAAHGNPVIINEILNLLYK-NGARPAGPGEFTYRAFL 133

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N K++L EAE++  LI+S+TEM  + ++  +SGE SS      D +T++ + +EA+LD  
Sbjct: 134 NDKMNLAEAEAVCALITSKTEMSAKAALNSLSGEFSSKIKNIRDAVTNLIASMEANLDHP 193

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + ED    S  E L+       D+ + ++  K G+I++ G K+VI+G  NAGKSSL NA+
Sbjct: 194 D-EDNMFLSRSEKLSRFDSCIKDVQNLLNSYKTGKILQYGIKVVIIGKPNAGKSSLLNAI 252

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVEN 298
             K+ AIVTDI GTT D +   +D  G  + I+DTAGIRE +++++E  G  +T   V  
Sbjct: 253 LGKNRAIVTDIAGTTTDTVEETIDCCGIPLIITDTAGIREHSENLIEILGQAKTREAVCK 312

Query: 299 ADLILLLKEINSKKEISFPK----------NIDFIFIGTKSDLYSTYT-------EEYDH 341
           AD+++ L + +S+ + +  K          NI  I +  KSDL   ++        +   
Sbjct: 313 ADILIWLFDSSSEPDCNDAKIADFLKKSDLNIPIICVLNKSDLPPLFSSSLLNRENKVKV 372

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            IS+ TG G+ +L+++I  I      K  + +  + RH   L  T+  L     SL+ KD
Sbjct: 373 KISAKTGVGIADLLDEIVKIAGVSESKNDYLMI-NTRHFILLQNTLESLIRTKQSLSAKD 431

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +I       A +SL +I G    + +LD IFS FCIGK
Sbjct: 432 AD-EIACFEALSAQISLNEILGINVKQDILDTIFSTFCIGK 471


>gi|187931774|ref|YP_001891759.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|208779948|ref|ZP_03247292.1| tRNA modification GTPase TrmE [Francisella novicida FTG]
 gi|254374693|ref|ZP_04990174.1| tRNA modification GTPase trmE family protein [Francisella novicida
           GA99-3548]
 gi|151572412|gb|EDN38066.1| tRNA modification GTPase trmE family protein [Francisella novicida
           GA99-3548]
 gi|187712683|gb|ACD30980.1| GTPase [Francisella tularensis subsp. mediasiatica FSC147]
 gi|208744403|gb|EDZ90703.1| tRNA modification GTPase TrmE [Francisella novicida FTG]
 gi|332678598|gb|AEE87727.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella cf.
           novicida Fx1]
          Length = 450

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 239/464 (51%), Gaps = 41/464 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGP----------SCFQVCEFICKKKKPFPRKASLRY 52
           + K+TI A++T                             + E + KK+   PR A+   
Sbjct: 2   YTKDTIVAIATPQGN----------GGIGIIRISGIDALAIAEKLTKKQL-KPRYATFCN 50

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
            +  D  I+D G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GE
Sbjct: 51  VYN-DNEIIDHGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGE 108

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+ RAF N K+DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++
Sbjct: 109 FTERAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYV 168

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +DF E E++     +++ + +  +   I +  +  K G I+  G  ++++G  NAGK
Sbjct: 169 EASIDFPE-EEINFLEDQKIHSSLEEIYKVILAVKNSCKQGVILAEGITLILVGKPNAGK 227

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR 
Sbjct: 228 SSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRA 287

Query: 293 FLEVENADLILLLKE--------INSKKEI------SFPKNIDFIFIGTKSDLYSTYTEE 338
             +++ AD +L + +         +  KEI        PK+ID  ++  K DL       
Sbjct: 288 IKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHN 347

Query: 339 YDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           + +   IS+    G+++L   I + +     +      + +RH+  ++    ++++A   
Sbjct: 348 HANHIYISAENNIGIDKLKEHILNKV-GYTNQNESIYTARERHVTAINNAFEHIKLAKEQ 406

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 407 LELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|218295491|ref|ZP_03496304.1| tRNA modification GTPase TrmE [Thermus aquaticus Y51MC23]
 gi|218244123|gb|EED10649.1| tRNA modification GTPase TrmE [Thermus aquaticus Y51MC23]
          Length = 432

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/441 (31%), Positives = 224/441 (50%), Gaps = 17/441 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRYFFGL-DGRI 60
           K+ I A++T     AI ++RLSG    ++     + + P   K    +L        G +
Sbjct: 4   KDPICAIATPPGKGAIGVVRLSGEGALELAARAFRGRDPRRLKGGRFTLGEVVDPATGEV 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ LL+VF +P S+TGED  EF  HG  AV+  ++E L  +   R A  GEF+ RA+ N
Sbjct: 64  IDQALLLVFRAPHSYTGEDLVEFQTHGSPAVLRRVMEVLVSL-GARPAGRGEFTLRAYLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++  LI +E E+ RR ++  + G LS       +KL  + + I+A LD+ E
Sbjct: 123 GKLDLAQAEAVLALIEAEGELARRQALRALEGALSRRIAALEEKLLGLLAHIQALLDYPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E    + +   +         ++   ++Q K   + + G ++ ++G  NAGKSSL NAL 
Sbjct: 183 EGVEPHRAEGVIRE----ALAEVEGLLAQAKASRLAQKGARLALIGAPNAGKSSLLNALL 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + A+V+ IPGTTRD L   L+L G  +   DTAG+RET+D +E+ G++R     E AD
Sbjct: 239 GYERALVSPIPGTTRDYLEAPLELFGIPLIAVDTAGVRETEDPLERAGVERALRIAEEAD 298

Query: 301 LILLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
           LIL + + +  +    P   + +  + TK+DL   + +     +SS TGEG+  L   ++
Sbjct: 299 LILYVADRSVPRPPPPPLPWERVVRVATKADLPKAWEDPAFLSVSSLTGEGMGRLKEALR 358

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
             L     +        +R +  L +    L  A         D++   L  A  +L  +
Sbjct: 359 EAL---LGREGGEFLLTERQVEALLRAKERLGEALA----LPEDLMGLALEEALRALAAL 411

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG    E+++  +F  FC+GK
Sbjct: 412 TGREVAEEVVARVFQNFCVGK 432


>gi|205829221|sp|Q5N638|MNME_SYNP6 RecName: Full=tRNA modification GTPase mnmE
          Length = 462

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/460 (31%), Positives = 234/460 (50%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           +TI A++T       ++ I+RLSG +  ++   I +     P + S R  +G       G
Sbjct: 7   DTIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQIAGQQPWE-SHRILYGYIRDPESG 65

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R++D+ LL+   +P S+T ED  E H HGG+  V   L+   +    RLA PGEF+ RAF
Sbjct: 66  RLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQLCIRA-GARLAEPGEFTLRAF 124

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AES+ADLIS+++    + ++  + G+L     Q  D+   I + +EA +DF
Sbjct: 125 LNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAEVEARIDF 184

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            +  D+     + +   +     D+ + +S    GE++R G KI I+G  N GKSSL NA
Sbjct: 185 ED--DLPPLDLEAIAAQLTAAGADMQAILSTADRGELLRTGLKIAIVGRPNVGKSSLLNA 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            ++ D AIVTD+PG TRD++   L + G  V++ DTAGIRET D VE+ G++R+    ++
Sbjct: 243 WSRCDRAIVTDLPGRTRDLVESQLIVGGIPVQVLDTAGIRETSDQVEQIGVERSRRAAQS 302

Query: 299 ADLILLLKEINSKKEISFP------KNIDFIFIGTKSDLYSTYTE----------EYDHL 342
           ADL+LL  + ++              +   + +  K D  S              +    
Sbjct: 303 ADLVLLTIDASAGWSAEDQTIWEAVSDRPILLVINKRDRLSEAERHAIALPQQEFKAIVW 362

Query: 343 ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
            ++   +G+E+L   I + + +       +    ++R +  L+     L       +   
Sbjct: 363 TAAAQQKGIEDLEAAILAAVGTGDLTSANWDWALNQRQVAALTTAQTALRRVEETLQAQL 422

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD    +LR A  +LG ITG    E +LD+IFS+FCIGK
Sbjct: 423 PLDFWTIDLREAIAALGSITGEGIAESMLDLIFSRFCIGK 462


>gi|62260919|gb|AAX77946.1| unknown protein [synthetic construct]
          Length = 485

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 239/464 (51%), Gaps = 41/464 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGP----------SCFQVCEFICKKKKPFPRKASLRY 52
           + K+TI A++T                             + E + KK+   PR A+   
Sbjct: 28  YTKDTIVAIATPQGN----------GGIGIIRISGIDALAIAEKLTKKQL-KPRYATFCN 76

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
            +  D  I+D G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GE
Sbjct: 77  VYN-DNEIIDHGIIIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGE 134

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+ RAF N K+DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++
Sbjct: 135 FTERAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYV 194

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +DF E E++     +++ + +  +   I +  +  K G I+  G  ++++G  NAGK
Sbjct: 195 EASIDFPE-EEINFLEDQKIHSSLEEIYKVILAVKNSCKQGVILAEGITLILVGKPNAGK 253

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR 
Sbjct: 254 SSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRA 313

Query: 293 FLEVENADLILLLKE--------INSKKEI------SFPKNIDFIFIGTKSDLYSTYTEE 338
             +++ AD +L + +         +  KEI        PK+ID  ++  K DL       
Sbjct: 314 IKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHN 373

Query: 339 YDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           + +   IS+    G+++L   I + +     +      + +RH+  ++    ++++A   
Sbjct: 374 HANHIYISAENNIGIDKLKEHILNKV-GYTNQNESIYTARERHVTAINNAFEHIKLAKEQ 432

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 433 LELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 476


>gi|284929261|ref|YP_003421783.1| tRNA modification GTPase trmE [cyanobacterium UCYN-A]
 gi|284809705|gb|ADB95402.1| tRNA modification GTPase trmE [cyanobacterium UCYN-A]
          Length = 457

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/460 (34%), Positives = 239/460 (51%), Gaps = 23/460 (5%)

Query: 1   MNHEKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFG 55
           M     TI A++T       ++ I+RLSG   + + + I     K++    K    Y   
Sbjct: 1   MIRSGRTIAAIATAVVPEEGSVGIVRLSGDKAYAIAKKIFIAPGKQQWESHKVLYGYIHS 60

Query: 56  -LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             D RI+D+ LLI+  +P S+T ED  EFH HGGI VV  +L+   K     LA  GEF+
Sbjct: 61  SKDSRIIDEALLILMLAPRSYTREDIVEFHCHGGIIVVQQVLQLCIK-EGAILAEHGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF NG+IDL +AES+++++ +++ +  +++M G+ G+LS+           + S IE+
Sbjct: 120 LRAFLNGRIDLTQAESISEIVGAKSPLASQIAMAGIQGKLSNPIKNLRLDCLELLSEIES 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF E  D+   S   +L  I    + +   +S  K GE++R+G KI ILG  N GKSS
Sbjct: 180 RIDFEE--DLPPLSQVVILQKIQDFLHRVKKLLSTSKTGELLRSGLKIAILGRPNVGKSS 237

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N+ ++ + AIVTD+PGTTRD++  +L ++   +K+ DTAGIR TD+ +EK G++RT L
Sbjct: 238 LLNSWSRSNKAIVTDLPGTTRDIVESNLIIKNIPIKVLDTAGIRHTDNQIEKIGVQRTHL 297

Query: 295 EVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDL----YSTYTEEY--DHL 342
               ADLILL  +          +     K++  I I  K DL     S    E      
Sbjct: 298 AANQADLILLTIDAQIGWTEEETEIYKKIKHLPIILIVNKIDLNVPDLSIIPSEIQEVIK 357

Query: 343 ISSFTGEGLEELINKIKSILSNKF-KKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDC 400
           IS+    G++ +   I + +  K           ++R L  L +  + + ++      + 
Sbjct: 358 ISAIQNLGIDSIEEAILNFIYKKNLIAKNVDFTINQRQLEILIRVKIAFEDIIKTINNEL 417

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD I  +LR A   LG+ITG    E LL  IFS FCIGK
Sbjct: 418 PLDFITIDLRSAIKILGEITGDEVTESLLSKIFSTFCIGK 457


>gi|56698706|ref|YP_169083.1| tRNA modification GTPase TrmE [Ruegeria pomeroyi DSS-3]
 gi|81819880|sp|Q5LLM7|MNME_SILPO RecName: Full=tRNA modification GTPase mnmE
 gi|56680443|gb|AAV97109.1| tRNA modification GTPase TrmE [Ruegeria pomeroyi DSS-3]
          Length = 428

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/437 (35%), Positives = 238/437 (54%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T    + +++IRLSGP  +     +     P  R  S+R      G  LD G+
Sbjct: 2   DTIFALATAQGKAGVAVIRLSGPRAYHTACLLAGPDLP-SRGLSVRQLKDSQGARLDDGV 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +P SFTGED AEF +HG +A    +L  L  +  LRLA PGEF+RRA ENGK+ L
Sbjct: 61  VLTFAAPASFTGEDVAEFQIHGSLATTEAVLRCLGDLDGLRLAEPGEFTRRALENGKMSL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ +   ++G L  L   W  KL    + +EA +DF++ E+V 
Sbjct: 121 PQVEGLADLIDAETEAQRKQAQAVLNGALGQLAEGWRAKLIRAAALLEAVIDFAD-EEVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV   +  ++ D+   I+  ++ E IR G+++ I+G  NAGKS+L N LA ++ A
Sbjct: 180 TDVSPEVRALLAEVRADLEHEIAGVRIAERIRTGFEVAIIGPPNAGKSTLLNMLAGREAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           + +++ GTTRDV+ + +DL G  V + DTAG+RET D+VE  GI       + ADL + L
Sbjct: 240 LTSEVAGTTRDVIEVRMDLGGLPVTLLDTAGLRETGDLVEGMGIALARRRADQADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E      +      D + +  K+D             S  TG+G+++L+ +I  +L  K
Sbjct: 300 TEDVDAMGVEL--QPDDLHVLPKADQRPDTANAI----SGVTGQGVDQLVQRISDVL--K 351

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCV 423
            +     I + +RH   +   +  L+      +      DI AE LR A  +L  + G +
Sbjct: 352 TRSSSAGIATRERHRVAMKTALDALDRTGTVLESGPDLYDIAAEELRTAIRALESLVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
            VE LLD IF+ FC+GK
Sbjct: 412 GVETLLDEIFASFCLGK 428


>gi|242079095|ref|XP_002444316.1| hypothetical protein SORBIDRAFT_07g020060 [Sorghum bicolor]
 gi|241940666|gb|EES13811.1| hypothetical protein SORBIDRAFT_07g020060 [Sorghum bicolor]
          Length = 548

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/471 (28%), Positives = 231/471 (49%), Gaps = 40/471 (8%)

Query: 7   TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKKK---------KPFPRKASLRYFFG 55
           TI A+ T  G  P+A+ I+RLSGP    V + + +           +P            
Sbjct: 81  TIAAIVTSLGGGPAAVGIVRLSGPDAVAVADRVFRPAGARRASAPWQPRSHFVEYGLALD 140

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            DG ++D+ L++   +P S+T ED  E   HG    +  +L    +    RLA+PGEF+ 
Sbjct: 141 ADGSVIDEVLVVPMLAPRSYTREDVVELQCHGNDLCLRRVLRACLEA-GARLADPGEFTL 199

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE+++ LIS+++      ++ G+ G  S+L      +   + + IEA 
Sbjct: 200 RAFLNGRLDLAQAENVSRLISAKSAAVADSALAGIQGGFSTLVRSLRSRCIELLTEIEAR 259

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF +  ++       +++ I  ++ ++   +      +++++G +I I+G  N GKSSL
Sbjct: 260 LDFED--EMPPLDLVMLVSKINCMRQEVQDALDTSNYDKLLQSGLQIAIIGRPNVGKSSL 317

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NA +K + AIVT+I GTTRDV+  ++ + G  V + DTAGIRETDD+VEK G+KR+   
Sbjct: 318 LNAWSKSERAIVTEIAGTTRDVVEANVSIHGVPVTLLDTAGIRETDDVVEKIGVKRSEAA 377

Query: 296 VENADLILL---LKEINSKKEISFPKN-----------IDFIFIGTKSDLYSTYTEEYDH 341
              ADLI++     +  +  +    ++           +  + +  K D       E   
Sbjct: 378 AMGADLIVMAISAVDGWTDDDTKLMEHVLINRKSSGSAVPMVLVINKVDCAPFVPGEQFE 437

Query: 342 LIS----------SFTGEGLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHLSQTVRY- 389
             S          + TG+G+ +L + +  +   +           ++R    L +T    
Sbjct: 438 QFSGLFIKHVQTCAVTGKGISDLESAVIEVRGIEHVPSEGRRWTVNQRQFEQLLRTKEAF 497

Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L + S   +   +D    +LR A+++L  I+G    E++L  IFSKFCIGK
Sbjct: 498 LRLESSINEQLPMDFWTVDLREAALALATISGEDISEEVLSSIFSKFCIGK 548


>gi|332655106|ref|ZP_08420847.1| tRNA modification GTPase TrmE [Ruminococcaceae bacterium D16]
 gi|332515966|gb|EGJ45575.1| tRNA modification GTPase TrmE [Ruminococcaceae bacterium D16]
          Length = 457

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/461 (31%), Positives = 234/461 (50%), Gaps = 25/461 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFF---- 54
           MN  ++TI A++T A+PSAI I+RLSGP   +      +           + +  +    
Sbjct: 1   MN--QDTIAAMATPAVPSAIGILRLSGPRAVETASACFRPAAGNRLEDHPAHKLVYGSLL 58

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
              G ++D+ L      P S+TGED+AE   HG   V+   LE L      R A PGEF+
Sbjct: 59  DAQGEVIDQVLCTYSRGPGSYTGEDTAELQCHGSPMVLTLGLEALF-AQGARQAGPGEFT 117

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL +AE++ADL+ + +    R +   +SG LS   GQ    L  + +   A
Sbjct: 118 QRAFLNGRLDLAQAEAVADLLDARSREGARHAAGRLSGALSRRVGQIYSALVDVMAHFHA 177

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LD+ + ED+  F+  ++ +D+      +   ++  + G  +  G +  ++G  NAGKSS
Sbjct: 178 VLDYPD-EDIDPFTLTKLEDDLSAQSRALHDLLATYQRGRRLNQGVRCALVGRPNAGKSS 236

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL   D AIVTDIPGTTRD L  +++L G  +++ DTAG+R++ D +E+ G++R+  
Sbjct: 237 LLNALVGYDRAIVTDIPGTTRDTLEAEVELGGVPLRLIDTAGLRDSSDPIERLGVERSRQ 296

Query: 295 EVENADLILLLKEIN---SKKEISFPKN----IDFIFIGTKSDLYSTY-------TEEYD 340
            +E A+LIL+L + +   ++++    +        I I TK+DL S              
Sbjct: 297 AMEEAELILVLWDSSVPATQEDGELLETALSLAPTILIHTKTDLPSAPVPFLNLSPLPPV 356

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             +S+ TGEGL +L   +  +           + S+ R      + +  +E A    E  
Sbjct: 357 VELSTKTGEGLADLEAAVAQLFPKGSDSAYGELLSNARQAQAAQRALEGVERARQALEAG 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D +  ++  A  +LG++TG    E +   IF +FC+GK
Sbjct: 417 MTPDALLTDVEEALQALGELTGQSVGEDVTARIFQRFCVGK 457


>gi|320527161|ref|ZP_08028348.1| tRNA modification GTPase TrmE [Solobacterium moorei F0204]
 gi|320132489|gb|EFW25032.1| tRNA modification GTPase TrmE [Solobacterium moorei F0204]
          Length = 459

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/431 (31%), Positives = 229/431 (53%), Gaps = 13/431 (3%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG-RILDKGLLIVFPSPESFT 76
            AIS+IR+SG    Q+   +  K     +  ++ Y    +G   +D+ L+ +F +P+S+T
Sbjct: 34  GAISVIRISGSDAIQIVTDLTGKDLSDAKGYTIHYATIKEGNESVDEVLVSLFRAPKSYT 93

Query: 77  GEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLIS 136
           GED  E   HGG+ +   +L  L      R+A  GEF+ RAF +GK+DL +AE + DLI 
Sbjct: 94  GEDVVEISCHGGVYITRKVLS-LILGAGARMARRGEFTERAFLSGKMDLSQAEGINDLIW 152

Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI 196
           ++ E+  + ++  + G ++ L     + LT I S IE ++D+ E +DV   + +E+L   
Sbjct: 153 AKDEINAKSAIHSLKGSVAKLMRSLEEDLTQIISNIEVNIDYPEYDDVHQLTEEEILPRA 212

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
               +DI   I   +   +I+ G   VILG  N GKSSL NAL ++D AIVTD+ GTTRD
Sbjct: 213 EKWIDDIHQIIVTAQQSAVIKEGINTVILGRPNVGKSSLLNALLEEDKAIVTDVAGTTRD 272

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----- 311
           ++   + L G  + + DTAGIR++DD +E+ GI ++   +E A L++++ + + +     
Sbjct: 273 LVEGTVRLSGITLNLIDTAGIRKSDDAIEQIGITKSLQALEKAQLVIVVLDGSEELTEED 332

Query: 312 -KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            + +   KN + I +  K D  S +      +  S   + + EL N I     +++    
Sbjct: 333 QELLEKTKNYNRIVVYNKKDKDSVHAG----ISISAIQKDITELTNAIVEKYQSEYIAAN 388

Query: 371 FSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLL 429
               +++R + +  Q  + + E  +       LD++  +L  A  +L +ITG    E LL
Sbjct: 389 SDTLNNERQIGYALQAEQAMREAVNALHAGMELDLVTIDLEKAWTALRQITGKAGKEDLL 448

Query: 430 DIIFSKFCIGK 440
           D IFS+FC+GK
Sbjct: 449 DEIFSRFCLGK 459


>gi|254373237|ref|ZP_04988726.1| GTP-binding protein [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570964|gb|EDN36618.1| GTP-binding protein [Francisella novicida GA99-3549]
          Length = 450

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 239/464 (51%), Gaps = 41/464 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGP----------SCFQVCEFICKKKKPFPRKASLRY 52
           + K+TI A++T                             + E + KK+   PR A+   
Sbjct: 2   YTKDTIVAIATPQGN----------GGIGIIRISGIDALAIAEKLTKKQL-KPRYATFCN 50

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
            +  D  I+D G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GE
Sbjct: 51  VYN-DNEIIDHGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALSCGARMAKAGE 108

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+ RAF N K+DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++
Sbjct: 109 FTERAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYV 168

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +DF E E++     +++ + +  +   I +  +  K G I+  G  ++++G  NAGK
Sbjct: 169 EASIDFPE-EEINFLEDQKIHSSLEEIYKVILAVKNSCKQGVILAEGITLILVGKPNAGK 227

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR 
Sbjct: 228 SSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRA 287

Query: 293 FLEVENADLILLLKE--------INSKKEI------SFPKNIDFIFIGTKSDLYSTYTEE 338
             +++ AD +L + +         +  KEI        PK+ID  ++  K DL       
Sbjct: 288 IKKIQEADQVLFVTDDYTSSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHN 347

Query: 339 YDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           + +   IS+    G+++L   I + +     +      + +RH+  ++    ++++A   
Sbjct: 348 HANHIYISAENNIGIDKLKEHILNKV-GYTNQNESIYTARERHVTAINNAFEHIKLAKEQ 406

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 407 LELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|313681708|ref|YP_004059446.1| tRNA modification GTPase trme [Sulfuricurvum kujiense DSM 16994]
 gi|313154568|gb|ADR33246.1| tRNA modification GTPase trmE [Sulfuricurvum kujiense DSM 16994]
          Length = 447

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 235/449 (52%), Gaps = 16/449 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            ETI A++T     +ISI+RLSG    ++   + +K    PR A+L      DG ++D+ 
Sbjct: 2   NETIAAIATANGIGSISILRLSGDRSLEIALKLTRKSNLQPRYATLASLHHNDGTLIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGE+  EF  HGG  V   +L  +      RLA PGEFS+RAF NG++D
Sbjct: 62  IVIYFQAPRSFTGEEVVEFQCHGGYVVAESLLRAVL-HEGARLAEPGEFSKRAFLNGRLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE+ A LI ++++   R+    M GEL        D L  I ++ E  +D++E ED+
Sbjct: 121 LTQAEATAALIEAKSDDAARILARQMKGELRGYIEGIRDSLLEILAYSEVVIDYAE-EDL 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                 ++   +  +K+ +S  +   +    +  G+++ I+G  N GKSSL NAL   + 
Sbjct: 180 PEDVVDQIEVKLENIKHTLSRTLESSRRRSGLMQGFRVAIIGKPNVGKSSLLNALLDYER 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+DI GTTRD +   + +  +L+++ DTAGIR   D +E+ GI+R+   +ENAD+++ 
Sbjct: 240 AIVSDIAGTTRDTIEEQVRIGTHLIRLVDTAGIRNASDEIERIGIERSIAAIENADVVIA 299

Query: 305 LKEINSKKEIS----------FPKNIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEGL 351
           L + + + +            +     FI I  KSDL   +   + E+ H I     +  
Sbjct: 300 LFDASREIDEEDRSIIDLVERYRSEKPFICIVNKSDLPQVFDMSSIEHYHPIRLSCKQDT 359

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           + L++ + S++ ++       +    R +      VR ++ A    +D  L+  + ++  
Sbjct: 360 QVLVDTLSSLMDHE-NDGEEMMLISARQISATEGAVRSIDEAYEPLRDGELEFFSFHINA 418

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   +  I+   +++++ D +F +FC+GK
Sbjct: 419 AIRYVASISRPYELDEMFDRMFGQFCLGK 447


>gi|90194128|gb|ABD92625.1| ThdF [Mannheimia glucosida]
          Length = 428

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/431 (31%), Positives = 224/431 (51%), Gaps = 21/431 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP    V + +  K  P PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRVSGPLAETVAQAVLGKTLP-PRIANYLPFKDEDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ + ++  LR+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDLLLKRILQVKGLRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+     +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINALVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   +     + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I G
Sbjct: 179 EAKLNEIIAQLDGVRREAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDVL   + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL+ +   ++
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWEEIAQADHVLLMIDSTEQQ 298

Query: 313 E-----------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELI 355
                          P N+    I  K DL                  S+ T  G++ L 
Sbjct: 299 ADQFRQEWAEFLAKLPANMPVTVIRNKVDLSGEQEGLIQVDDFTMIRLSAQTKVGVDLLR 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASV 414
             +K  +  +         + +RHL  L     +LE   +        +++AE LR+   
Sbjct: 359 EHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFLAGELLAEELRMVQN 417

Query: 415 SLGKITGCVDV 425
           +L +ITG    
Sbjct: 418 ALSEITGQFTS 428


>gi|1524359|emb|CAA66716.1| GTPase [Synechocystis sp. PCC 6803]
          Length = 456

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/457 (31%), Positives = 232/457 (50%), Gaps = 25/457 (5%)

Query: 5   KETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
           ++TI  ++T       +I ++RLSGP    + + +         + S R  +G       
Sbjct: 4   EDTIARIATAIVPQQGSIGVVRLSGPQSLTIAKTLFDAPGNQTWE-SHRILYGHVRHPQT 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ LL++  +P S+T ED  EF  HGGI  V  +  +L      RLA PGEFS RA
Sbjct: 63  KAAIDEALLLLMLAPRSYTKEDVVEFQCHGGIMPVQQV-LQLCLQQGARLAQPGEFSFRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AES ++L+ +++     +++ G+ G+L+       +    I + +EA +D
Sbjct: 122 FLNGRLDLTQAESHSELVGAQSPQAGAIALAGLQGKLAQPIRDLRNTCLDILAEVEARID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F +  D+       +   +  L   +   ++  + GE++R G K+ I+G  N GKSSL N
Sbjct: 182 FED--DLPPLDEDSIRQQLQNLYQQLEDILNTAQAGELLRTGLKVAIVGQPNVGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           A ++ D AIVTD+PGTTRDV+   L +EG  +++ DTAGIRET D VE+ G++R+    +
Sbjct: 240 AWSRTDRAIVTDLPGTTRDVVESQLVVEGIPIQVLDTAGIRETADQVEQIGVERSRKAAQ 299

Query: 298 NADLILLLKEI-----NSKKEI-SFPKNIDFIFIGTKSDLYST----YTEEYDHL--ISS 345
            ADL+LL  +       + + I    K+   I +  K DL       Y  E  +    ++
Sbjct: 300 QADLVLLTVDAHQGWTEADQLIYEQVKDRPLILVINKIDLGRADLVSYPPEITNTVLTAA 359

Query: 346 FTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLD 403
               G+E L N  I+ +              ++R    L++    L ++     +   LD
Sbjct: 360 AANLGIEALENAIIEQVNQTNLSPQNLDFAINQRQEAVLTEAQLALKQLQQTMAEQLPLD 419

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +LRLA  +LG++TG    E +LD IFS+FCIGK
Sbjct: 420 FWTIDLRLAMNALGEVTGETVTESVLDRIFSRFCIGK 456


>gi|28883199|gb|AAO50079.1| tRNA-modification protein [Pseudomonas syringae pv. phaseolicola]
          Length = 461

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/427 (33%), Positives = 222/427 (51%), Gaps = 26/427 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRVSGPLAGRAAEAIIGRTL-KPRFAHYGPFVDDAGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VLN +  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R    +  AD
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297

Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345
            ILL+ +  + +               P       I  K+DL        T    H+  S
Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDPIDLQTSVDGHVTIS 357

Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399
            +    G GLE L   +K+ +    +    S  + +RHL  L      LE   A L    
Sbjct: 358 LSARSGGAGLELLREHLKACM-GYEQTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416

Query: 400 CGLDIIA 406
            G +++A
Sbjct: 417 AG-ELLA 422


>gi|254369611|ref|ZP_04985622.1| hypothetical protein FTAG_01502 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122565|gb|EDO66700.1| hypothetical protein FTAG_01502 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 450

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 239/464 (51%), Gaps = 41/464 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGP----------SCFQVCEFICKKKKPFPRKASLRY 52
           + K+TI A++T                             + E + KK+   PR A+   
Sbjct: 2   YTKDTIVAIATPQGN----------GGIGIIRISGIDALAIAEKLTKKQL-KPRYATFCN 50

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
            +  D  I+D G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GE
Sbjct: 51  VYN-DNEIIDHGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGE 108

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+ RAF N K+DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++
Sbjct: 109 FTERAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYL 168

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +DF E E++     +++ + +  +   I +  +  K G I+  G  ++++G  NAGK
Sbjct: 169 EASIDFPE-EEINFLEDQKIHSSLEEIYKVILAIKNSCKQGVILAEGITLILVGKPNAGK 227

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR 
Sbjct: 228 SSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRA 287

Query: 293 FLEVENADLILLLKE--------INSKKEI------SFPKNIDFIFIGTKSDLYSTYTEE 338
             +++ AD +L + +         +  KEI        PK+ID  ++  K DL       
Sbjct: 288 IKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHN 347

Query: 339 YDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           + +   IS+    G+++L   I + +     +      + +RH+  ++    ++++A   
Sbjct: 348 HANHIYISAENNIGIDKLKEHILNKV-GYTNQNESIYTARERHVTAINNAFEHIKLAKEQ 406

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 407 LELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|54020066|ref|YP_115685.1| tRNA modification GTPase TrmE [Mycoplasma hyopneumoniae 232]
 gi|81823547|sp|Q601N0|MNME_MYCH2 RecName: Full=tRNA modification GTPase mnmE
 gi|53987239|gb|AAV27440.1| thiophene and furan oxidation protein [Mycoplasma hyopneumoniae
           232]
          Length = 442

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/442 (36%), Positives = 250/442 (56%), Gaps = 8/442 (1%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A+++G +  AISIIR+SGP+ F++ E I   K     + +  +    D + +D+ 
Sbjct: 3   SDTICAIASGQINQAISIIRISGPNAFKIMEKIFLGKVGKSMEITFGWIHD-DNQKIDQV 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F   ++F GED+ E + HGG+   N ILE + K    RLANPGEFS RAF NGKID
Sbjct: 62  LVLWFAGNKNFVGEDTVEINAHGGVLNTNLILELILKTKLARLANPGEFSLRAFLNGKID 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++A+++ DLI +E ++Q + ++    G+ S+     I+K+  I   IE ++D+ E +DV
Sbjct: 122 LVKAQAINDLIHAEVKVQHQAALNQFLGKSSNFIKNLIEKIEEIIGIIEVNIDYPEYDDV 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +S  +L  I  L  D    I       +I  G K  ++G  N+GKSSL N L  ++ 
Sbjct: 182 EILTSDVLLPRINQLLADFDQLIKIANNSRLIYQGIKTCLVGAPNSGKSSLLNILINENK 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++IPGTTRDV+  +  L+G L K+ DTAGIR+T + +E+ GI++++  ++ ADLIL 
Sbjct: 242 AIISEIPGTTRDVVEGNFVLDGLLFKLFDTAGIRKTTEKIEQIGIEKSYESIKKADLILH 301

Query: 305 LKEINSKKEISF------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           + + + K   +         +  ++ I  KSDL     E  D ++ S   + +E L+ KI
Sbjct: 302 IIDASEKNRQNLDLKAKTRPDQIYLKIYNKSDLLENQEEFKDEILISAKYQKIENLLEKI 361

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           KSI +   K   F   S +     L + +  L+  +  E   G +I   +LR+A   L  
Sbjct: 362 KSIFAFLGKNKEFVANSFQISQIELGK-LAILDAKTSLESGFGPEIAIVDLRIAWKELKT 420

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           I G VD E LLD IFSKFC+GK
Sbjct: 421 IFGRVDDENLLDSIFSKFCLGK 442


>gi|229496106|ref|ZP_04389828.1| tRNA modification GTPase TrmE [Porphyromonas endodontalis ATCC
           35406]
 gi|229317002|gb|EEN82913.1| tRNA modification GTPase TrmE [Porphyromonas endodontalis ATCC
           35406]
          Length = 468

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/466 (30%), Positives = 233/466 (50%), Gaps = 32/466 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP--FPRKASLRYFFGLDGRI 60
            ++ TI A+++G     I++IR+SG       + I    +    PR A         G I
Sbjct: 7   TDESTICALASGRG-GGIALIRVSGSQALPCLQQIFSPHRDSWTPRHAYYGTI-SRSGEI 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ ++  + +P S+TGED  E   H    +V  +L  L      R A PGE++ R++ N
Sbjct: 65  LDEVVVTYYQAPNSYTGEDLVEISCHASPYIVQTLLRWLV-AEGCRPAQPGEYTLRSYLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+ DL EAE++AD+I++E+  Q RL+++ + G+LS   G   D+L    S +E +LDFSE
Sbjct: 124 GRRDLAEAEAVADVIAAESAAQHRLALQQLRGKLSQELGSLHDQLLEFASLLELELDFSE 183

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            EDV+    + + +    ++  I   I     G+ ++ G  I ILG  N GKS+L NAL 
Sbjct: 184 -EDVEFADREALRSLATAIQQRIGQLIGSFTQGKHLKEGIPIAILGQPNTGKSTLLNALL 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIV+DI GTTRD +   L ++G L +I DTAG+R T D +E+ GIKR   + E+A 
Sbjct: 243 GEDRAIVSDIEGTTRDSIEEKLVIKGVLFRIIDTAGLRHTQDPIEQLGIKRALQKAEDAA 302

Query: 301 LILLLKEI----------NSKKEISFPKNIDFIFI-GTKSDLYSTYTEEYDHLISSFTGE 349
           L L+L +           + ++  S P + +   +   K DL +    E      S    
Sbjct: 303 LSLILLDALRVQKEGVNSSLEQLASLPLSPENRLVLLNKIDLLTEEEREALAAEVSAAFR 362

Query: 350 GLEELINK-------------IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SL 395
               L++              +K     +      ++ +++RHL+ L +   +L      
Sbjct: 363 QTPVLLSAKEGRGLEELQELLLKKSGIQEGNTEEETLITNERHLHALEKAATHLRTVLEA 422

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
            + +  +D I  +LR    +LG+ITG  +  E++L  IF+ FCIGK
Sbjct: 423 LDANVSVDFITLDLRCVLEALGEITGHTITGEEVLHSIFAHFCIGK 468


>gi|256370677|ref|YP_003108502.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri SMDSEM]
 gi|256009469|gb|ACU52829.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri SMDSEM]
          Length = 461

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/464 (34%), Positives = 249/464 (53%), Gaps = 27/464 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK---KKPFPRKASLRYFFGLD 57
           M  EK+TI A++T +   AI++IR+SG +  ++   I      KK     +    F  + 
Sbjct: 1   MLKEKDTIVAIATPSGYGAIAVIRMSGKNSLKIINNIFVSISLKKKLSENSINLGFIKIK 60

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +I+DK L++VF  P+S+TGED  E   HG + + N IL  +      RLANPGEF+ RA
Sbjct: 61  KKIIDKVLILVFKKPKSYTGEDVVEISCHGSMYIQNKILSIII-DQGARLANPGEFTLRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGKIDL +AES+ D+++SET     L++  M G +S++      K+  + S IE +LD
Sbjct: 120 FINGKIDLCQAESILDIVNSETLFSHELAINQMRGNISNIIKNLRKKIIDLLSLIELELD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FSE E++   + +E    +  +   I+  I   K+G  ++NG  + I+G +N GKS+LFN
Sbjct: 180 FSE-ENLFVLNKREFQKILDNIIKKINDLIKSFKIGNALKNGILVSIIGCTNVGKSTLFN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEV 296
            + K + +IV++I GTTR+ +  +L + G   +  DTAGI  +T D +EK GIK+T+  +
Sbjct: 239 KILKDERSIVSNIAGTTRNYIEENLIINGIKFRFIDTAGINNKTKDYIEKLGIKKTYKNI 298

Query: 297 ENADLILLLKEINSKKEI---------SFPKNIDFIFIGTKSD---------LYSTYTEE 338
           + +DLIL + +  +++ I          +PK   FI I  K D             Y ++
Sbjct: 299 KKSDLILYVFDCLNEEIIMKNLKSLQEKYPKKKIFILI-NKYDLIKKNKKKINLRNYQDK 357

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLEMASLN- 396
               IS+  G G++ L+++I             SI   + RH  +L + + YL     + 
Sbjct: 358 DIFHISAKYGYGIKNLLDEITFFSKKITSLKENSIIITQTRHYENLKKAIFYLYKVKEDL 417

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           EK    + +  +L+ A   LG+I G V  E +L  IFSKFCIGK
Sbjct: 418 EKSISPEFLYISLQTALECLGQIIGEVTNEDILSNIFSKFCIGK 461


>gi|90194092|gb|ABD92607.1| ThdF [Actinobacillus hominis]
          Length = 435

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/440 (32%), Positives = 236/440 (53%), Gaps = 24/440 (5%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRISGPLAQEVAKEVLGKEL-KPRLANYLPFKDQDGTVLDQGIALFFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  +++ +L+ +  +  +R+A  GEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   Q +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEI-IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
              +  +   ++    + K G I +R+  +    G  NAGKSSL NALA ++ AIVT+I 
Sbjct: 179 EGHLNDIIRQLNGVRQEAKQGAICVRD--ESGDAGRPNAGKSSLLNALAGREAAIVTNIA 236

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           GTTRDVL   + ++G  + I DTAG+RE  D VEK GI+R + E+E AD +LL+ +   +
Sbjct: 237 GTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQ 296

Query: 312 KEISF-----------PKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFTGEGLEEL 354
              +F           P+NI    I  K DL   S   +E D      +S+ T  G++ L
Sbjct: 297 TAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGESESLQELDGFTLIRLSAQTKVGVDLL 356

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLAS 413
              +K  +  +         + +RHL  L     +LE   +        +++AE LR+  
Sbjct: 357 REHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAGELLAEELRMVQ 415

Query: 414 VSLGKITGCVDVEQLLDIIF 433
            +L +ITG    + LL  IF
Sbjct: 416 NALSEITGQFTSDDLLGNIF 435


>gi|323342292|ref|ZP_08082524.1| tRNA modification GTPase TrmE [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463404|gb|EFY08598.1| tRNA modification GTPase TrmE [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 446

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/450 (30%), Positives = 241/450 (53%), Gaps = 14/450 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG-- 58
           M    +TI A+ T    SAI+++R+SG     +   I  +        ++ Y   +D   
Sbjct: 1   MRMITDTIVAIITALQESAINVLRISGVDAIDIVNQIFSRDLEHVDSHTVHYGHIIDPVN 60

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ L+ VF +P ++T ED  E   HGG+ V   +L  L      R+A PGE+++RA
Sbjct: 61  KQVVDEVLVSVFRAPRTYTREDVVEISCHGGVLVTKKVLS-LCLSVGARMAEPGEYTQRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ +LI +  E  + L++ G+ G +  L   ++++L  + + IE ++D
Sbjct: 120 FLNGRIDLSQAESVMELIQAPNEFAQELAISGVQGNVRKLIEPFLERLIQMIANIEVNID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  +   +L +      D+   + + + G I++ G K VILG  N GKSS+ N
Sbjct: 180 YPEYDDVEVLTEAVILPEAKRFLEDLGKILKESQSGRIMKEGVKTVILGKPNVGKSSILN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L ++D AIVT+I GTTRD++   + LE   + + DTAG+R+T D +E+ GI+++   +E
Sbjct: 240 VLLEEDKAIVTEIAGTTRDLVEGWIRLENVALHLIDTAGLRDTGDRIEQIGIEKSRKALE 299

Query: 298 NADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           +A+L++++ + +  ++      +   K+ + I +  K DL      E D L  S     +
Sbjct: 300 SAELVIVVFDASQARDQEDIDLLEATKHKERIIVYNKKDL---VNREPDGLYVSALEGDV 356

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLR 410
            EL+++I        K L     S++RH+  + ++   ++ A    E    LD++  +L 
Sbjct: 357 HELVDEINKRYVEHTKALTKPTLSNERHIAQVQKSYLAMQRALEALEFGMELDLVTIDLN 416

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + V L  I        +LD IF++FC+GK
Sbjct: 417 ESYVELASIIKPKKDINVLDEIFARFCLGK 446


>gi|154249072|ref|YP_001409897.1| tRNA modification GTPase TrmE [Fervidobacterium nodosum Rt17-B1]
 gi|205829140|sp|A7HK07|MNME_FERNB RecName: Full=tRNA modification GTPase mnmE
 gi|154153008|gb|ABS60240.1| tRNA modification GTPase TrmE [Fervidobacterium nodosum Rt17-B1]
          Length = 459

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 164/456 (35%), Positives = 255/456 (55%), Gaps = 21/456 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRYFFGL 56
           N  ++TI A+ST     AI+IIR+SG    ++ E   K KK        R+ +  YF+  
Sbjct: 8   NLNRDTIVALSTPPGIGAIAIIRISGNKSLELTEKTIKNKKINIKTLEERRINHGYFYDE 67

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +G I+D+ + + F SP S+TGED  E + HGGI V N I++ L K+   RLA  GEF+RR
Sbjct: 68  NGEIIDEIMFVYFKSPRSYTGEDMVEIYCHGGILVTNKIIDTLLKL-GARLAENGEFTRR 126

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NGKIDL++AES+  +I +++E   +L+++ + G+LS+        L ++ S IE  +
Sbjct: 127 AFLNGKIDLIKAESILQIIEAKSEKSLKLALDNLKGKLSNEIEYLRSSLINVLSKIEVSI 186

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ ++ DV     +E+LND++ +++ +   I     G  I  G  + I+G  N GKS+L 
Sbjct: 187 DYGDDIDVP---KEEILNDLINVQSFLKEKIKHADKGLHISTGVTMAIVGKPNVGKSTLL 243

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  +D AIVTDIPGTTRDV+  +L ++G    ISDTAGIR T+D VEK GI++   E 
Sbjct: 244 NRLLVEDRAIVTDIPGTTRDVIKGELKIKGVHFIISDTAGIRMTEDKVEKIGIEKALNEA 303

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-----LISS 345
           + +D+IL L +         +   +  K+ +FI +  K D+     ++        +IS+
Sbjct: 304 KKSDVILFLLDATTGFTNEDEYIYNLIKDCNFIPVWNKIDIAEKVDKDIVFLRNSVVISA 363

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDCGLDI 404
            TG G+ EL  KI   +    +    S  + KR L +L +     ++  +  +K+  LDI
Sbjct: 364 ETGRGMRELEEKILESVKVLVEDGELSHVTSKRQLEYLKRVEYNIIKAINSLKKNMPLDI 423

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+ ++R     L ++ G    E LLD IFS FC+GK
Sbjct: 424 ISIDIRNGLEQLDELMGRNFTEDLLDNIFSNFCVGK 459


>gi|134301618|ref|YP_001121586.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|166991112|sp|A4IX14|MNME_FRATW RecName: Full=tRNA modification GTPase mnmE
 gi|134049395|gb|ABO46466.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 450

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 239/464 (51%), Gaps = 41/464 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGP----------SCFQVCEFICKKKKPFPRKASLRY 52
           + K+TI A++T                             + E + KK+   PR A+   
Sbjct: 2   YTKDTIVAIATPQGN----------GGIGIIRISGIDALAIAEKLTKKQL-KPRYATFCN 50

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
            +  D  I+D G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GE
Sbjct: 51  VYN-DNEIIDHGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGE 108

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+ RAF N K+DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++
Sbjct: 109 FTERAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYV 168

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +DF E E++     +++ + +  +   I +  +  K G I+  G  ++++G  NAGK
Sbjct: 169 EASIDFPE-EEINFLEDQKIHSSLEEIYKVILAVKNSCKQGVILAEGITLILVGKPNAGK 227

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR 
Sbjct: 228 SSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRA 287

Query: 293 FLEVENADLILLLKE--------INSKKEI------SFPKNIDFIFIGTKSDLYSTYTEE 338
             +++ AD +L + +         +  KEI        PK+ID  ++  K DL       
Sbjct: 288 IKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHN 347

Query: 339 YDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           + +   IS+    G+++L   I + +     +      + +RH+  ++    ++++A   
Sbjct: 348 HANHIYISAENNIGIDKLKEHILNKV-GYTNQNESIYTARERHVTAINNAFEHIKLAREQ 406

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 407 LELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|332559704|ref|ZP_08414026.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides WS8N]
 gi|332277416|gb|EGJ22731.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides WS8N]
          Length = 428

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 164/437 (37%), Positives = 248/437 (56%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+++    + ++++RLSGP   +  +       P  R A+LR     +G +LD+ L
Sbjct: 2   DTIYALASARGKAGVAVLRLSGPRSHEAVQA-FGVPLPPLRHAALRRLTW-NGEVLDEAL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +++F +  SFTGE SAE H+HG  A V+ +L  L+ +P LR A  GEF+RRA ENG++DL
Sbjct: 60  VLLFGAGASFTGETSAELHLHGSPAAVSSVLRVLSGLPGLRAAEAGEFTRRALENGRLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QRR +M   SG +     +W   L    + +EA +DF++ EDV 
Sbjct: 120 AQVEGLADLIDAETEAQRRQAMRVFSGAIGERAERWRADLIRAAALLEATIDFAD-EDVP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EVL  I  L  D+   +   ++ E IR+G+++ I+G  NAGKS+L NALA+++ A
Sbjct: 179 VDVTPEVLTLIDGLLADLRREVDGSRIAERIRDGFEVAIVGAPNAGKSTLLNALARREAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++I GTTRDV+ + +DL+G  V   DTAG+RET D+VE  GI+R     + ADL + L
Sbjct: 239 ITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRETSDLVESLGIERAVTRAKAADLRVFL 298

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            + +S          D + +  K+DL           +S  TGEG+ EL+  I   L  +
Sbjct: 299 LD-DSGPLSGITVQADDLVVQGKADLRP----GQGLRLSGRTGEGVPELVAAIGERLLRR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
                    +H+RH   + + +  +E   A L       ++ A++LR A  SL  + G V
Sbjct: 354 TAGAGS--LTHERHRLAIERAIGAMESVRAELLRGQQHTELAADDLRRAIRSLDSLVGRV 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LL  IF+ FCIGK
Sbjct: 412 DVESLLGEIFASFCIGK 428


>gi|269836202|ref|YP_003318430.1| tRNA modification GTPase TrmE [Sphaerobacter thermophilus DSM
           20745]
 gi|269785465|gb|ACZ37608.1| tRNA modification GTPase TrmE [Sphaerobacter thermophilus DSM
           20745]
          Length = 466

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 233/468 (49%), Gaps = 38/468 (8%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----PRKASLRYFFGL---- 56
           +TI A++T      I I+R+SGP   Q+   I ++ +        +  S R ++G     
Sbjct: 4   DTISAIATPLGEGGIGIVRISGPDADQIASRIFRRGRSLRPVDVAQLESHRLYYGYVVDP 63

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            D R++D+ LL    +P S+T ED  E   HGG  VV  +L  L      R A PGEF+ 
Sbjct: 64  RDERVVDEVLLARMAAPRSYTREDVVEISCHGGPLVVREVL-RLTLAAGARQAEPGEFTL 122

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++  ++S+ T     L++  + G +    G   + L    ++++A 
Sbjct: 123 RAFLNGRIDLAQAEAVMAVVSARTPDSLDLAVGELRGRMVGRLGPAREALIEALAYLDAS 182

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
            DF E+E V        L       +++   ++  +LG + R G +I I+G  N GKSSL
Sbjct: 183 ADFPEDE-VPPLDLTGTLARAEAALDEV---VAGARLGLLYREGVQIAIVGRPNVGKSSL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L + + AIVTDI GTTRDV+   ++L+G    + DTAGI +T+DI+E+ GI R+   
Sbjct: 239 LNTLLRAERAIVTDIAGTTRDVIAESINLQGIPATLIDTAGIADTEDIIERMGIDRSRRA 298

Query: 296 VENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEE---- 338
           ++ A L + + + +               + ++   +   + +  K DL   +  +    
Sbjct: 299 LDTAGLAIFVLDGSMPPTPDDFRVAELLQRRVASDGHDRLVLVLNKRDLPDRHDHDEIRA 358

Query: 339 -----YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
                    +S+ TGEG+ +L   +   L  +  +         R    L++ +  +  A
Sbjct: 359 LLPGAPVVEVSTRTGEGIAQLEATLAEALIARAAEGAAPALVTLRQQQALTRALESIRQA 418

Query: 394 -SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  + +  LD++A ++R A +++G+ITG    E +LD IF++FCIGK
Sbjct: 419 RAALDAEIPLDLVAVDVRDALLAVGEITGEQVSETILDEIFARFCIGK 466


>gi|115314929|ref|YP_763652.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           holarctica OSU18]
 gi|122325057|sp|Q0BLL9|MNME_FRATO RecName: Full=tRNA modification GTPase mnmE
 gi|115129828|gb|ABI83015.1| GTP-binding protein [Francisella tularensis subsp. holarctica
           OSU18]
          Length = 450

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 240/464 (51%), Gaps = 41/464 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGP----------SCFQVCEFICKKKKPFPRKASLRY 52
           + K+TI A++T                            ++ E + KK+   PR A+   
Sbjct: 2   YTKDTIVAIATPQGN----------GGIGIIRISGIDALEIAEKLTKKQL-KPRYATFCN 50

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
            +  D  I+D G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GE
Sbjct: 51  VYN-DNEIIDHGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARIAKAGE 108

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+ RAF N K+DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++
Sbjct: 109 FTERAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYV 168

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +DF E E++     +++ + +  +   I +  +  K G I+  G  ++++G  NAGK
Sbjct: 169 EASIDFPE-EEINFLEDQKIHSSLEEIYKVILAIKNSCKQGVILAEGITLILVGKPNAGK 227

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR 
Sbjct: 228 SSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRA 287

Query: 293 FLEVENADLILLLKE--------INSKKEI------SFPKNIDFIFIGTKSDLYSTYTEE 338
             +++ AD +L + +         +  KEI        PK+ID  ++  K DL       
Sbjct: 288 IKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHN 347

Query: 339 YDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           + +   IS+    G+++L   I + +     +      + +RH+  ++    ++++A   
Sbjct: 348 HANHIYISAENNIGIDKLKEHILNKV-GYTNQNESIYTARERHVTAINNAFEHIKLAKEQ 406

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 407 LELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|313679829|ref|YP_004057568.1| tRNA modification GTPase trme [Oceanithermus profundus DSM 14977]
 gi|313152544|gb|ADR36395.1| tRNA modification GTPase trmE [Oceanithermus profundus DSM 14977]
          Length = 436

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/445 (31%), Positives = 233/445 (52%), Gaps = 15/445 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS---LRYFFGL- 56
           +    +TI AV+T   P  + ++R+SGP   +V   + + + P           +     
Sbjct: 2   LPSLHDTIAAVATPPGPGGVGVLRVSGPQALEVAARVWRGRDPRTSPGGRFWHGWIVDPA 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G  +D+ +L+VF SP S+TGED  E   HG  AV+  +   L     +R A PGEF+ R
Sbjct: 62  TGEPVDEAVLLVFRSPRSYTGEDVVELQTHGSPAVLGRV-LRLLLEAGVRPAGPGEFTLR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           A+ NG++DL +AES+  L+ +E+E  RR ++ G++ +LS       D+L  + + I+A L
Sbjct: 121 AYLNGRMDLAQAESVLALVEAESETARRQALRGLTRKLSQKIDALADRLLDLLAHIQALL 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ EE    + + + +      +  ++ + ++    G  +R G ++ ++G  NAGKSSL 
Sbjct: 181 DYPEEGVEPHAAERVI----ASVLEEVEALLATADAGRRVREGARLALVGAPNAGKSSLL 236

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + A+V D PGTTRD L   L++EG  +   DTAG+R TDD VE  G++R     
Sbjct: 237 NALLGFERALVHDRPGTTRDYLEAALEIEGVPLVAVDTAGLRRTDDPVEAAGVERALAVA 296

Query: 297 ENADLILLLKE-INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
             ADLIL L +    + +         I + TK+DL + + +     +S+ +G+GL+ L 
Sbjct: 297 READLILYLVDRSRPRPDPPSLPWARTIRLATKADLPAAWRDPDFLEVSAHSGQGLDALR 356

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
            +I++ L     +    I S +RH   L++   +L    L  +    D++  +L  A+ +
Sbjct: 357 ARIRARLLGGASESEVWITS-ERHREALAEARAHL----LEARGAPEDLMGMSLEAAARA 411

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           LG+ITG    E+ +  IF  FC+GK
Sbjct: 412 LGRITGREATEETVARIFQNFCVGK 436


>gi|58039527|ref|YP_191491.1| tRNA modification GTPase TrmE [Gluconobacter oxydans 621H]
 gi|81819099|sp|Q5FS11|MNME_GLUOX RecName: Full=tRNA modification GTPase mnmE
 gi|58001941|gb|AAW60835.1| tRNA modification GTPase [Gluconobacter oxydans 621H]
          Length = 437

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/433 (36%), Positives = 246/433 (56%), Gaps = 12/433 (2%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           IFA++TG   +AI+I+R SGP    + + +C  + P PR+ SLR     +G +LD  + +
Sbjct: 17  IFALATGPSRAAIAIMRASGPGSDAILKALCNGRLPAPRRVSLRTLR-HNGEVLDHAVAL 75

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127
             P P S+TGED  E H+H G A++  I + L  +   R A PGEF+RRA + G++DLL+
Sbjct: 76  WLPGPNSYTGEDGFELHLHAGPAIIARIADALTDL-GARPAEPGEFTRRAVQKGRLDLLQ 134

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           AE++ADL+ +ETE QR+ ++    G LS LY  W  +L  + +  EA +DF + E++   
Sbjct: 135 AEAIADLVDAETESQRKQALRQADGALSRLYDDWAQRLRLVLAHQEALIDFPD-EELPQD 193

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
               ++ ++  L+ ++S+H+     GE++R G  +VI G  N GKSSL NAL+  D AIV
Sbjct: 194 VEDGLIEELSKLQTEMSAHLQD-NRGELMRQGLTVVIAGSPNVGKSSLLNALSGTDAAIV 252

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           T   GTTRD + +D  L+G  +++ DTAG+RET+D +E EGI+R    V+ AD++L L  
Sbjct: 253 THRAGTTRDAIALDWVLDGVRLRLIDTAGLRETEDEIEAEGIRRALFHVKQADVVLHLIG 312

Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
            +   +    + I    I TK D+            S+ +GEGL  L   +   ++    
Sbjct: 313 PDESLDTLSGQEIP---IRTKIDIAPAPPGMLGI--STQSGEGLAALRQILSERVAELMA 367

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQ 427
                  +  RH   + + V +L+ A         ++  E LRL+ ++LG++TG VDVE 
Sbjct: 368 GSAAPPLTRARHRAGIQEAVTHLDHARTATW---PELRGEELRLSMLALGRLTGRVDVES 424

Query: 428 LLDIIFSKFCIGK 440
           LLD IF +FCIGK
Sbjct: 425 LLDAIFGQFCIGK 437


>gi|71893561|ref|YP_279007.1| tRNA modification GTPase TrmE [Mycoplasma hyopneumoniae J]
 gi|123645874|sp|Q4AAC5|MNME_MYCHJ RecName: Full=tRNA modification GTPase mnmE
 gi|71851688|gb|AAZ44296.1| tRNA modification GTPase ThdF/TrmE [Mycoplasma hyopneumoniae J]
          Length = 442

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/442 (36%), Positives = 250/442 (56%), Gaps = 8/442 (1%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A+++G +  AISIIR+SGP+ F++ E I   K     + +  +    D + +D+ 
Sbjct: 3   SDTICAIASGQINQAISIIRISGPNAFKIMEKIFLGKVGRSMEITFGWIHD-DNQKIDQV 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F   ++F GED+ E + HGG+   N ILE + K    RLANPGEFS RAF NGKID
Sbjct: 62  LVLWFAGNKNFVGEDTVEINAHGGVLNTNLILELILKTKLARLANPGEFSLRAFLNGKID 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++A+++ DLI +E ++Q + ++    G+ S+     I+K+  I   IE ++D+ E +DV
Sbjct: 122 LVKAQAINDLIHAEVKVQHQAALNQFLGKSSNFIKNLIEKIEEIIGIIEVNIDYPEYDDV 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +S  +L  I  L  D    I       +I  G K  ++G  N+GKSSL N L  ++ 
Sbjct: 182 EILTSDVLLPRINQLLADFDQLIKIANNSRLIYQGIKTCLVGAPNSGKSSLLNILINENK 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI+++IPGTTRDV+  +  L+G L K+ DTAGIR+T + +E+ GI++++  ++ ADLIL 
Sbjct: 242 AIISEIPGTTRDVVEGNFVLDGLLFKLFDTAGIRKTTEKIEQIGIEKSYESIKKADLILH 301

Query: 305 LKEINSKKEISF------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           + + + K   +         +  ++ I  KSDL     E  D ++ S   + +E L+ KI
Sbjct: 302 IIDASEKNRQNLDLKAKTRPDQIYLKIYNKSDLLENQEEFKDEILISAKYQKIENLLEKI 361

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           KSI +   K   F   S +     L + +  L+  +  E   G +I   +LR+A   L  
Sbjct: 362 KSIFAFLGKNKEFVANSFQISQIELGK-LAILDAKTSLESGFGPEIAIVDLRIAWKELKT 420

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           I G VD E LLD IFSKFC+GK
Sbjct: 421 IFGRVDDENLLDSIFSKFCLGK 442


>gi|194223742|ref|XP_001503159.2| PREDICTED: similar to mitochondrial GTP binding protein 2 [Equus
           caballus]
          Length = 428

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/436 (36%), Positives = 236/436 (54%), Gaps = 44/436 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P PR A LR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRSLTAPRDVPPPRSACLRLLSDPRTGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRSWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    +   +++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLERADSEVRELEVALGAHLRDARRGQRLRSGAHVVVAGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+   +SDTAG+RE    VE+EG++R   +V    L+L 
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGVGPVEQEGVRRALPDV-PPHLLLF 333

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           L +                                        G  LE L  ++  +  +
Sbjct: 334 LPDRGG------------------------------------AGWLLEALRKELAEVCGD 357

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
                P  + +  RH +HL   +  L +    +    L + AE LR+A   L ++TG   
Sbjct: 358 PATGPP--LLTRARHQHHLQSCLDALGLYKQAK---DLALAAEALRVARGHLTRLTGGGG 412

Query: 425 VEQLLDIIFSKFCIGK 440
            E++LD+IF  FC+GK
Sbjct: 413 TEEILDLIFRDFCVGK 428


>gi|241762347|ref|ZP_04760427.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373141|gb|EER62780.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 434

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 164/443 (37%), Positives = 253/443 (57%), Gaps = 20/443 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGL 65
           TIFA+S+G  P+ I++IR+SG +       + +KK P  R+A LR  +  D G  LD+ L
Sbjct: 3   TIFALSSGRPPAGIAVIRISGSAAADTACLLTRKKIPEARRAVLRNLYDPDSGEQLDQSL 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+  P+P++ TGED  E HVHGG AV++ +L+ L K+P+LR A  GEF+RRAFENG I L
Sbjct: 63  LLWLPAPKTVTGEDLLELHVHGGRAVIDAVLKTLEKLPDLRPAEAGEFTRRAFENGVISL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE L DL+++ET  QRR ++    G L      W D+L  +   IEA  DF+E+ +  
Sbjct: 123 HEAEGLGDLLTAETASQRRAALMMSGGALGRQISAWQDRLLALSGQIEASFDFAEDIEED 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKL------GEIIRNGYKIVILGHSNAGKSSLFNAL 239
              S++ L     +K+ I++ I++ +        E +R+G ++V+ G  NAGKS+L NAL
Sbjct: 183 ETESRQHL---AVMKDKIAALIAEHRQFENRPTMERLRDGLRVVLAGRPNAGKSTLINAL 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D+AI   I GTTRDV+ +   L+G  ++ SDTAG+ E+DD++EK GI+R    +E A
Sbjct: 240 TGQDIAITAPIAGTTRDVIEVSFALKGIPMRFSDTAGLHESDDLIEKAGIERAQRAIEEA 299

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST--YTEEYDHLISSFTGEGLEELINK 357
           D++L L +           + + + +  + DL       E+ D  +S+ TGEG++ L  K
Sbjct: 300 DILLWLGQAEEAP----KTDGEVLVLYPQIDLPKRHPIPEKIDIAVSAVTGEGIDRLQEK 355

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           +  I   K       +  ++R    + +    L +A   E    + I+AE +R A     
Sbjct: 356 LVEI-GKKILPKEDEVTLNRRQRQLVKEAADSLALALEAE---DMLIMAEAIRQACRCYD 411

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           ++TG   VE +LD +FS+FCIGK
Sbjct: 412 RLTGKAGVENMLDNLFSRFCIGK 434


>gi|254496744|ref|ZP_05109603.1| tRNA modification GTPase TrmE [Legionella drancourtii LLAP12]
 gi|254354039|gb|EET12715.1| tRNA modification GTPase TrmE [Legionella drancourtii LLAP12]
          Length = 411

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/416 (35%), Positives = 235/416 (56%), Gaps = 18/416 (4%)

Query: 37  ICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGIL 96
           I   K   PR A+   F+     ++D+GL++ F +P SFTGED  E   HG   V++ + 
Sbjct: 2   INGNKALSPRLATFCSFY--SDSLIDQGLMLYFKAPHSFTGEDVVEIQAHGSPVVLDMLT 59

Query: 97  EELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSS 156
           +   ++   RLA PGEFS RAF N KIDL +AE++ADLI + ++   R++++ + GE S+
Sbjct: 60  KACIEV-GARLARPGEFSERAFLNDKIDLTQAEAIADLIQASSQTAARMALKSLQGEFSN 118

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
              Q  ++L ++R ++EA +DF E E++   +  +V   +  +  ++++   Q   G ++
Sbjct: 119 KINQLNEQLIYLRLYVEAAIDFPE-EEIDFLNDGKVATLLKTILAELTAIRLQANQGVLL 177

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G  +VI G  NAGKS+L N LA +D+AIVT+I GTTRDV+   + L+   + I DTAG
Sbjct: 178 REGLSLVIAGRPNAGKSTLINNLAGRDIAIVTEIAGTTRDVMREHILLDDIPLHIIDTAG 237

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNIDFIFIGT 327
           +RE+DD+VEKEGIKR + E++ AD +LL+ +IN  +           + P ++  I +  
Sbjct: 238 LRESDDVVEKEGIKRAWQELKKADCVLLVVDINDSEHHHLLTKEIRAALPTDVPIITVFN 297

Query: 328 KSDLYSTYT--EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           K D  +     +E+   +S+ +G+G+  L   IK ++   ++       + +RHL  L +
Sbjct: 298 KIDTVAQAAQVQEHAVYLSAKSGDGINGLKQVIKDVV--GYQPNEGQFLARRRHLQALDE 355

Query: 386 TVRYLEMASLNEK-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               L             +++AE+LRLA   L +ITG    + LL  IFS FCIGK
Sbjct: 356 AKNLLVTGQQQLAVHRAGELLAEDLRLAQQVLCEITGEFSSDDLLGRIFSSFCIGK 411


>gi|56708343|ref|YP_170239.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670814|ref|YP_667371.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457467|ref|ZP_03665940.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370965|ref|ZP_04986969.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875165|ref|ZP_05247875.1| tRNA modification GTPase trmE family protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|81597291|sp|Q5NFF3|MNME_FRATT RecName: Full=tRNA modification GTPase mnmE
 gi|122970893|sp|Q14GV5|MNME_FRAT1 RecName: Full=tRNA modification GTPase mnmE
 gi|56604835|emb|CAG45916.1| tRNA modification GTPase trmE family protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110321147|emb|CAL09299.1| tRNA modification GTPase trmE family protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151569207|gb|EDN34861.1| hypothetical protein FTBG_01711 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841164|gb|EET19600.1| tRNA modification GTPase trmE family protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282159580|gb|ADA78971.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 450

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 239/464 (51%), Gaps = 41/464 (8%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGP----------SCFQVCEFICKKKKPFPRKASLRY 52
           + K+TI A++T                             + E + KK+   PR A+   
Sbjct: 2   YTKDTIVAIATPQGN----------GGIGIIRISGIDALAIAEKLTKKQL-KPRYATFCN 50

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
            +  D  I+D G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GE
Sbjct: 51  VYN-DNEIIDHGIIIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGE 108

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+ RAF N K+DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++
Sbjct: 109 FTERAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYV 168

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +DF E E++     +++ + +  +   I +  +  K G I+  G  ++++G  NAGK
Sbjct: 169 EASIDFPE-EEINFLEDQKIHSSLEEIYKVILAVKNSCKQGVILAEGITLILVGKPNAGK 227

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR 
Sbjct: 228 SSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRA 287

Query: 293 FLEVENADLILLLKE--------INSKKEI------SFPKNIDFIFIGTKSDLYSTYTEE 338
             +++ AD +L + +         +  KEI        PK+ID  ++  K DL       
Sbjct: 288 IKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHN 347

Query: 339 YDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           + +   IS+    G+++L   I + +     +      + +RH+  ++    ++++A   
Sbjct: 348 HANHIYISAENNIGIDKLKEHILNKV-GYTNQNESIYTARERHVTAINNAFEHIKLAKEQ 406

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    +++AE L +    L  ITG    + LL  IFS FCIGK
Sbjct: 407 LELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450


>gi|332878607|ref|ZP_08446327.1| tRNA modification GTPase TrmE [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332683508|gb|EGJ56385.1| tRNA modification GTPase TrmE [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 469

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/471 (30%), Positives = 239/471 (50%), Gaps = 33/471 (7%)

Query: 1   MN--HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFG- 55
           MN  +  +TI A++T     AI +IRLSG     + + I K    KP    A+     G 
Sbjct: 1   MNGLYTSDTIVALATATGAGAIGVIRLSGNEAIAIADTIFKAHHAKPLAEVATHTVHLGM 60

Query: 56  --LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
              +G  +D+ L  VF    S+TGE   EF  HG   ++  +++        RLA  GEF
Sbjct: 61  IEAEGHQIDECLATVFKGQRSYTGEPVVEFSCHGSSYIIAQVMKSCL-AKGARLAEAGEF 119

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RAF NGK+ L +AE++ADLI+S++E   R++++ M G  +S       +L +  S IE
Sbjct: 120 TKRAFLNGKMALSQAEAVADLIASDSEASHRVALQQMRGGFASEIETLRGELLNFASLIE 179

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
            +LDF+E EDV           +  +K  I+  ++   +G +++NG  + I+G  NAGKS
Sbjct: 180 LELDFAE-EDVAFADRDSFKALLSHIKQTITQLVASFSVGNVLKNGMPVAIVGKPNAGKS 238

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           +L NAL  ++ AIV+DI GTTRD +   L + G   +  DTAGIRET D +E  G++R  
Sbjct: 239 TLLNALLNEERAIVSDIAGTTRDTIEEVLHIGGIAFRFIDTAGIRETHDAIEAIGVQRAK 298

Query: 294 LEVENADLILL--------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-IS 344
            ++  A +++         + ++ +  +  + + + F+ +  K DLY+     +D     
Sbjct: 299 EKIAKAQIVIFLYNQYDDTVADVVAFVKEHYREGVFFVLVHNKIDLYTEGVHTFDEQVRH 358

Query: 345 SFTGEGLEEL---------INKIKSILSNKFKKLP-----FSIPSHKRHLYHLSQTVRYL 390
           +  G  +  L         + ++K  L+N  +++       ++ ++ RH   L Q +  +
Sbjct: 359 ALVGYNITLLTLSAKERVYLEELKQSLTNYAQQINKAAAGNTVVTNLRHYEALQQALTAV 418

Query: 391 EMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E            D++A ++R     LG ITG V  +++L  IFSKFCIGK
Sbjct: 419 ERVEEGLASGLSADLLAIDIRETLYYLGSITGAVSNDEVLGNIFSKFCIGK 469


>gi|320581325|gb|EFW95546.1| hypothetical protein HPODL_2880 [Pichia angusta DL-1]
          Length = 479

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/462 (32%), Positives = 256/462 (55%), Gaps = 29/462 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL-DKGL 65
           T++A+ST    SAI+++R++GPS   +   +  +++P PR A+L   +    +++ D+ +
Sbjct: 19  TVYALSTYPARSAIAVVRITGPSSVSIYRALTARQQPKPRIATLAKLYHPKTKVILDEAI 78

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSRRAFENG 121
           ++ F  P S+TGED  E H+HGG AV+  I+E L  +      +R A PG+FS++AF+NG
Sbjct: 79  VLYFKGPNSYTGEDMLELHLHGGTAVIKCIMESLELLHTPANPIRPAEPGDFSKKAFQNG 138

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE +  LI +ETE QR LS+  M GE   L+  W +++ +  + I   +DF EE
Sbjct: 139 KMDLTQAEGINSLIHAETERQRLLSLTSMKGETKELFHHWREQILNTYALITTLIDFGEE 198

Query: 182 EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            D++      +   +DI  L+ ++  ++ + +  + + +G+KI + G  NAGKSSL N +
Sbjct: 199 HDIEEIGQLFERAESDIKTLETEVRGYLERVQRSQTLMDGFKITLSGPPNAGKSSLLNII 258

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A +D AIV++I GTTRD + + LD+ GY V I DTAGIR  ++ +E+EGI+R  ++   A
Sbjct: 259 ANEDRAIVSEIEGTTRDSIEVPLDINGYKVVIGDTAGIRNAENQIEQEGIRRAKMKTSEA 318

Query: 300 DLILLLKEINSKK-------EISFPKNIDFIFIGTKSDLY-------------STYTEEY 339
           DL L+L     ++        I        + I  KSDL                +  + 
Sbjct: 319 DLNLVLLPCTPRELRKEMKDHIRSCDKEKLLIILNKSDLVTPDQVGNLVAQLEQEFEPKE 378

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             +IS    +G+ +L+N I   L +  +  P  + S  +++        + E   ++ K 
Sbjct: 379 IKVISCRNKDGIHDLLNTITQKLDHWTQDEPIFVSSRVQNIIQHDLLFGFEEFY-MHSKS 437

Query: 400 CGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
             + + AE L+++   +GKITG  + VE++L  IF+ FCIGK
Sbjct: 438 NDVVLAAEALKISMEGIGKITGEAIGVEEILGSIFANFCIGK 479


>gi|163757466|ref|ZP_02164555.1| putative tRNA modification GTPase [Hoeflea phototrophica DFL-43]
 gi|162284968|gb|EDQ35250.1| putative tRNA modification GTPase [Hoeflea phototrophica DFL-43]
          Length = 395

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/395 (43%), Positives = 248/395 (62%), Gaps = 3/395 (0%)

Query: 48  ASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107
           A+       +   LD+GL++ FP+P SFTGED AE H+HG  A V  +L  L  +   RL
Sbjct: 2   ATFCDIKDKNQLRLDRGLVLFFPAPHSFTGEDVAELHIHGSRASVAAVLMALTDLDGFRL 61

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEF+R+AFENGK+DL E E L+DLI +ETE QRR ++    G L SLY  W  +LTH
Sbjct: 62  AEPGEFTRQAFENGKLDLTEVEGLSDLIRAETESQRRQALLQADGVLRSLYEGWARRLTH 121

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
            R+ IEA+LDFS+E+D+    S ++  D+  L  +I SH+      E++R+GY+I ++G 
Sbjct: 122 ARAMIEAELDFSDEDDIPGSVSDQIWKDMGLLLAEIRSHLECASAAEVVRDGYRIALIGP 181

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL N L+K+DVAIV+DIPGTTRDV+ + LD+ GYLV + DTAG+RE+ D +E E
Sbjct: 182 PNAGKSSLLNYLSKRDVAIVSDIPGTTRDVVEVRLDIAGYLVVLQDTAGLRESSDQIEIE 241

Query: 288 GIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISS 345
           GI+R+ +  E+ADL+L L E      +      + I I TK D        ++    IS+
Sbjct: 242 GIRRSLIAAEDADLVLELHEFGVPGRVVPSGVNERIEIVTKVDCLDEPFTADDAAFGIST 301

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
            TG G+++L+  I   L N        +P+  RH+  L   V  +E+A +   +  +++ 
Sbjct: 302 LTGAGIDKLLEAISERLENLAPSGEMGLPTRARHVDLLQDCVTAIEVA-MKSAEAPIEVR 360

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +E LR A+ S+G+ITG VDVE LL ++FS+FC+GK
Sbjct: 361 SEYLRHAANSMGRITGMVDVEDLLGVVFSEFCVGK 395


>gi|195331616|ref|XP_002032497.1| GM23491 [Drosophila sechellia]
 gi|194121440|gb|EDW43483.1| GM23491 [Drosophila sechellia]
          Length = 493

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/470 (33%), Positives = 253/470 (53%), Gaps = 36/470 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGL-DGRILDK 63
           TI+++S+G +   +S+IR+SGP   +    I   K+  P  R+A L+ F+      ++D+
Sbjct: 24  TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIIANKEYEPKARQAYLKSFYHPASKEMIDR 83

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ FP P SFTGEDS EF VHG +AV+  +L+ L K+  LR A PGEF++RAF  GK+
Sbjct: 84  GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKL 143

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL E E LADLI +ETE QR+ ++   +G L+ LY  W  +L    + +EA +DF+EEE 
Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++     ++  ++  +K +I  H+S  + GE++R+G + VI+G  N GKSSL N L ++ 
Sbjct: 204 IEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCRRS 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
           V+IVTD  GTTRD++    +  GY V  SDTAG+R  T D +E+EG++R    +  +DLI
Sbjct: 264 VSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKNCLVQSDLI 323

Query: 303 LLLKEINSKK-----------------EISFPKNID----FIFIGTKSD-LYSTYTEEYD 340
           LLL E                      E+  P ++        +  K+D L     ++ D
Sbjct: 324 LLLAEAKHIAQLTHDDAVAPYVDSYLGELDIPLDMCSGKRLQLVANKTDTLTEEEHQQLD 383

Query: 341 H-----LISSFTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMA 393
                  IS    + +   +  ++  L       +      ++ R+   L + +  +++ 
Sbjct: 384 KLSNVLAISCHKPDKMAVFLGSLEKQLQELCGEPRAENPRITNTRYRQQLERCIENIDIF 443

Query: 394 SLN---EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +   +    + I A  LR +   + +ITG +  E +LD++F  FCIGK
Sbjct: 444 LRDYRPDVYPDMAIAASKLRNSVRCIERITGHISCEDILDVVFKDFCIGK 493


>gi|294055629|ref|YP_003549287.1| tRNA modification GTPase TrmE [Coraliomargarita akajimensis DSM
           45221]
 gi|293614962|gb|ADE55117.1| tRNA modification GTPase TrmE [Coraliomargarita akajimensis DSM
           45221]
          Length = 453

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/452 (31%), Positives = 230/452 (50%), Gaps = 18/452 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDK 63
            +TI A+ST A  SAI++IRLSGP C  +   +  +     PR A    +  + G ++D 
Sbjct: 4   SDTIVALSTPAGESAIAVIRLSGPLCPSIAMQVMGRSTALKPRYAHYGSYTSVGGDLIDD 63

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            +  +F S +SFTGE   E   HG   +V  I+E+L K      A PGEF+R AF NGKI
Sbjct: 64  CVFTLFESGKSFTGEAMLEIAPHGNPMIVQRIVEDLLKR-GCCAAEPGEFTRTAFLNGKI 122

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE+++DLI + +E    ++   + G +     +  +++  + + +EA +DF E ED
Sbjct: 123 DLSQAEAVSDLIRARSERSIEVAQRQLHGSVGRKMSELTERVLAVMAHLEAYIDFPE-ED 181

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +          D+  L  ++   +       ++  G K +I+G  N GKSSL NAL   +
Sbjct: 182 LPPEDQAGPSQDLRQLIQEVRELVETQHYNALLHEGIKTLIVGEPNVGKSSLINALTGTE 241

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV+D+PGTTRD ++  L L  + ++I DTAG+ E  D +E+ GI+ T  + E AD  L
Sbjct: 242 RAIVSDVPGTTRDFISSFLMLGPWRIEILDTAGLHEAGDAIEQIGIQHTIEQAETADFFL 301

Query: 304 LLKEINSK------KEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLI-SSFTGEGL 351
           ++ +          + +    + + + +  K+DL S      +  E  H   S  T  G+
Sbjct: 302 VVVDATQPSPTLPVELLERLSSKNALVLVNKTDLASPEPHAEFLPELPHCPLSLLTNVGM 361

Query: 352 EELINKIKSILSNKFKK--LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAEN 408
           E         +            +  + RH   L++     E+A+   KD  L +++A +
Sbjct: 362 ERFRADWLKAIDAGLTGPIATDGLVVNARHAAALTEAADAFELAAQKLKDDELAELVAAD 421

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LR A  S+GK+ G VD E++LD +F +FCIGK
Sbjct: 422 LRDAVDSIGKVVGKVDNERMLDSLFKQFCIGK 453


>gi|56552884|ref|YP_163723.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|81820837|sp|Q5NKZ8|MNME_ZYMMO RecName: Full=tRNA modification GTPase mnmE
 gi|56544458|gb|AAV90612.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 434

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 165/443 (37%), Positives = 253/443 (57%), Gaps = 20/443 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGL 65
           TIFA+S+G  P+ I++IR+SG +       + +KK P  R+A LR  +  D G  LD+ L
Sbjct: 3   TIFALSSGRPPAGIAVIRISGSAAADTACLLTRKKIPEARRAVLRNLYDPDSGEQLDQSL 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+  P+P++ TGED  E HVHGG AV++ +L+ L K+P+LR A  GEF+RRAFENG I L
Sbjct: 63  LLWLPAPKTVTGEDLLELHVHGGRAVIDAVLKTLEKLPDLRPAEAGEFTRRAFENGVISL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE L DL+++ET  QRR ++    G L      W D+L  +   IEA  DF+E+ +  
Sbjct: 123 HEAEGLGDLLTAETASQRRAALMMSGGALGRQISAWQDRLLALSGQIEASFDFAEDIEED 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKL------GEIIRNGYKIVILGHSNAGKSSLFNAL 239
              S++ L     +K+ I++ I++ +        E +R+G ++V+ G  NAGKS+L NAL
Sbjct: 183 ETESRQHL---AVMKDKIAALIAEHRQFENRPTMERLRDGLRVVLAGRPNAGKSTLINAL 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D+AI   I GTTRDV+ +   L+G  ++ SDTAG+ E+DD++EK GI+R    +E A
Sbjct: 240 TGQDIAITAPIAGTTRDVIEVSFALKGIPMRFSDTAGLHESDDLIEKAGIERAQRAIEEA 299

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST--YTEEYDHLISSFTGEGLEELINK 357
           D++L L +           + + + +  + DL       E+ D  +S+ TGEG++ L  K
Sbjct: 300 DILLWLGQAEEAP----KTDGEVLVLYPQIDLPERHPIPEKIDIAVSAVTGEGIDRLQEK 355

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           +  I   K       +  ++R    + +    L +A   E    + IIAE +R A     
Sbjct: 356 LVEI-GKKILPKEDEVTLNRRQRQLVKEAADSLALALDAE---DMLIIAEAIRQACRCYD 411

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           ++TG   VE +LD +FS+FCIGK
Sbjct: 412 RLTGKAGVENMLDNLFSRFCIGK 434


>gi|21672311|ref|NP_660378.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|2495118|sp|Q44633|MNME_BUCAP RecName: Full=tRNA modification GTPase mnmE
 gi|1369898|dbj|BAA12845.1| thiophene and furan oxidation protein [Buchnera aphidicola]
 gi|2827009|gb|AAC38101.1| tRNA methyltransferase [Buchnera aphidicola]
 gi|21622910|gb|AAM67589.1| thiophene and furan oxidation protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 456

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 162/457 (35%), Positives = 250/457 (54%), Gaps = 25/457 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A  T    SA+ I+R+SG    QV   +   K P PR A+   FF    ++LD+G
Sbjct: 4   NDTIIAQVTCPGKSAVGILRVSGIHANQVAFAVLG-KIPKPRFATYSKFFDESKKVLDEG 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE--LAKMPNLRLANPGEFSRRAFENGK 122
           + + FP+P S TGED  E   HG   +++ +++     K   +R+A PGEF +RAF NGK
Sbjct: 63  ISLWFPAPFSLTGEDVLELQGHGNPFIMDLLIKRILCLKNIKIRIAQPGEFCQRAFLNGK 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL++AE++ DLI+SETE   R S+  + G  S    + I KL   R+ IEA +DFSE E
Sbjct: 123 IDLIQAEAIDDLINSETESVVRASLNSLHGNFSFYIQKIIKKLIEFRTNIEASIDFSE-E 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++    +  ++++   L +      +    G +IR   +IVI+G  NAGKSSL N L+ +
Sbjct: 182 NIDFDFNIFIMSNFEKLNDKFLKIKNIVSEGSLIREAKRIVIVGPPNAGKSSLLNVLSCR 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVTD+PGTTRDVL  ++++ G   +I DTAG+RET+D +EK GI+R++  ++N+D +
Sbjct: 242 DRAIVTDLPGTTRDVLYENINIHGISCEIIDTAGLRETEDKIEKIGIQRSWEMIKNSDHV 301

Query: 303 LLLKE------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------S 344
           L + +            I   K+IS     +  F+  K+DL   +              S
Sbjct: 302 LYVMDKTISLEDQKKTSIQFMKQISSYNIQEVTFVLNKNDLVEDFCGITKIENLLFISIS 361

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TG+G++ L   + +    K K       + +RH++ +  +   L  A  N  K   ++
Sbjct: 362 ALTGQGIDILKKHLSN--RQKDKSQEGLFIARRRHIHQIDLSYCELLKAQKNWLKYKNIE 419

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE+L + +  LG+ITG      LL  IFS FCIGK
Sbjct: 420 LLAESLNIINKLLGEITGEFTSSDLLKRIFSTFCIGK 456


>gi|317968166|ref|ZP_07969556.1| tRNA modification GTPase TrmE [Synechococcus sp. CB0205]
          Length = 449

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/439 (32%), Positives = 237/439 (53%), Gaps = 19/439 (4%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFP 70
              ++SI+R+SGP    + E +  +        S R  +G       G  +D+ LL++  
Sbjct: 16  GEGSVSIVRISGPEAEAIGERLF-EAPGQQVWESHRVLYGHVRDPGSGERVDEALLLLMR 74

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
           +P SFT E   E H HGG+  V  +LE L      R A PGEFS+RAF NG++DL  AE+
Sbjct: 75  APRSFTRETVVELHCHGGVISVQRVLE-LVLAAGARRALPGEFSQRAFLNGRLDLTRAEA 133

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +++L+++ +    +L+M G+ G L         +L    + +EA +DF +  D+     +
Sbjct: 134 ISELVTARSRRAAQLAMAGLDGGLERQISGLRLRLLDQLAELEARVDFED--DLPPLDGQ 191

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
            V +++  +++ +   ++ G+ G+++R G K+ I+G  N GKSSL N L++ D AIVTD+
Sbjct: 192 AVASELQAVRSALQELVADGERGQVLREGLKVAIVGRPNVGKSSLLNLLSRSDRAIVTDL 251

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-- 308
           PGTTRD++  +L L+G  + + DTAGIR+T+D VE+ GI+R+   ++ AD++LLL +   
Sbjct: 252 PGTTRDLVESELVLKGVPLTLLDTAGIRDTEDRVEQIGIERSRGALQAADVVLLLFDRAQ 311

Query: 309 -----NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKIKSIL 362
                +     S P+ I  + +  K+D  +     + D  IS+ TGEG E L++++    
Sbjct: 312 GWLAEDQALLASLPQGIPHLVVANKADQPAAEPAAHADVCISALTGEGHEALVDRLLQS- 370

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDCGLDIIAENLRLASVSLGKITG 421
             +  +    +  ++R L         L+      E+    D    +LR A  SLG+ITG
Sbjct: 371 CGQGGEQGLQVALNRRQLDLAVSAAASLQRTLEAGEQQLPWDFWTIDLRAAVRSLGEITG 430

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               E +LD IFS+FCIGK
Sbjct: 431 AEVTEAVLDRIFSRFCIGK 449


>gi|164686452|ref|ZP_02210480.1| hypothetical protein CLOBAR_00017 [Clostridium bartlettii DSM
           16795]
 gi|164604463|gb|EDQ97928.1| hypothetical protein CLOBAR_00017 [Clostridium bartlettii DSM
           16795]
          Length = 462

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 147/465 (31%), Positives = 243/465 (52%), Gaps = 38/465 (8%)

Query: 5   KETIFAVSTGALPS-----------AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF 53
            +TI A++T                ++ +         ++ + +  KK       +L Y 
Sbjct: 7   DDTIAAIATAPGEGGIGIIRISGSNSLKV-------AEEIFKAVSGKKISEYNSRTLVYG 59

Query: 54  FGLDGRI-LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
              DG   +D+ L+     P S+TGED  E + HGG   V  ILE L    ++RLA  GE
Sbjct: 60  NIFDGEKRIDEVLVAYMEGPRSYTGEDVIEINCHGGFISVKKILE-LILTKDVRLAEAGE 118

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF NG+IDL +AE++ D+I S+T+  + ++   + G L++       K+T + + +
Sbjct: 119 FTKRAFLNGRIDLSQAEAVIDVIKSKTDKAQEVAQNQLEGSLANKIKSLRLKVTEVLAQL 178

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E  +DFS+ EDV++ + KE+    L L+ +I       + G+I+R+G K VI+G  N GK
Sbjct: 179 EVSIDFSD-EDVEDVTYKEIEEKSLELREEIKKLYDSAESGKILRDGLKTVIIGKPNVGK 237

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL N++  ++ AIVT+I GTTRDV+   ++++G  +KI DTAGIRET+DIVEK G++++
Sbjct: 238 SSLLNSILGENRAIVTEIAGTTRDVIEEFVNIKGIPLKIVDTAGIRETEDIVEKIGVQKS 297

Query: 293 FLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTE--------- 337
              +++ADL++++ + +        + +   K+   I +  K DL     E         
Sbjct: 298 KESIDSADLVIIVLDSSKSLTDEDLEILESAKSKKTIVLLNKIDLDQAIDETAIEEFVGK 357

Query: 338 EYDHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL- 395
           +    IS+   EG+E++ +KI+S++     K     + ++ RH   L +    +  A   
Sbjct: 358 DNIIKISALKNEGIEQIHDKIESMVFAGDVKSSSNLVITNSRHKDALFKAYNSINDAIDG 417

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            E+    D I  + +     LG I G    E LLD IFS FCIGK
Sbjct: 418 IEQRLPYDFIEVDFKNIWDYLGYINGDTVQEDLLDTIFSNFCIGK 462


>gi|90194068|gb|ABD92595.1| ThdF [Histophilus somni]
          Length = 424

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/427 (33%), Positives = 233/427 (54%), Gaps = 20/427 (4%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSP 72
           T      + I+R+SGP   QV E +   K   PR A+   F   DG +LD+G+ + F +P
Sbjct: 1   TPIGRGGVGILRVSGPLAQQVAEQVLG-KTLTPRMANYLPFKDSDGSVLDQGIALYFKAP 59

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+DL +AE++A
Sbjct: 60  NSFTGEDVLELQGHGGQIVMDLLLKRILQIDGIRLARPGEFSEQAFLNDKLDLAQAEAIA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI + +E   R +++ + GE S+   + +D + ++R+++EA +DF + E++   +  ++
Sbjct: 120 DLIEASSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPD-EEIDFLADGKI 178

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  +   ++   ++ K G I+R G K+VI G  NAGKSSL N LA ++ AIVTDI G
Sbjct: 179 ETHLREIIAKLAKVKNEAKQGAILREGMKVVIAGRPNAGKSSLLNTLAGREAAIVTDIAG 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           TTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+E AD ILL+ +     
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLRDATDEVEKIGIRRAWDEIEQADRILLILDSTENQ 298

Query: 308 -----INSKKEISFPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELIN 356
                + S+     P +I    +  K+DL                 +S+ T +G++ L  
Sbjct: 299 VELDLVRSEFMAKLPPHIPLTIVRNKADLSGEAEVLDEQNGLTVISLSAKTQKGVDLLRQ 358

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASVS 415
            +K  +  +         + +RHL  L Q   +L+   +   +    +++AE LR+    
Sbjct: 359 HLKQSMGYQVCT-EGGFLARRRHLEALEQADIHLQAGLIQLTEFYAGELLAEELRIVQHH 417

Query: 416 LGKITGC 422
           L +ITG 
Sbjct: 418 LSEITGQ 424


>gi|126724526|ref|ZP_01740369.1| tRNA modification GTPase [Rhodobacterales bacterium HTCC2150]
 gi|126705690|gb|EBA04780.1| tRNA modification GTPase [Rhodobacterales bacterium HTCC2150]
          Length = 430

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 165/437 (37%), Positives = 243/437 (55%), Gaps = 11/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    S ++++R+SG       E +     P PR+  LR  +   G +LDK L
Sbjct: 3   DTIFALASAKGKSGVAVVRISGSLARDCVEKLA-STCPEPRQMGLRKLYDSVGDVLDKAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F    SFTGED AE H+HG  A V  +L+ L+ M  LR+A PGEF+RRA ENG++DL
Sbjct: 62  VLFFAQNASFTGEDVAELHLHGSPATVKAVLKTLSDMSGLRIAEPGEFTRRALENGQLDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E L+DL+ +ETE QRR ++    G L      W   L H  + +EA +DF++ EDV 
Sbjct: 122 AQVEGLSDLVEAETEAQRRQALRIFDGALGVASTAWRGDLVHAAALLEATIDFAD-EDVP 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EVL+ I  ++ D++  I      E IR+G+++ I+G  N+GKS+L NALA ++ A
Sbjct: 181 VDVTPEVLDLIGRVQKDLAREIKGSTAAERIRDGFEVAIVGAPNSGKSTLLNALAGREAA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++I GTTRDV+ + +DL G  V I DTAG+R+TDD VE  GI+        ADL + L
Sbjct: 241 ITSEIAGTTRDVIEVRMDLRGLPVTILDTAGLRKTDDHVEGLGIQLAEKRAAQADLRVFL 300

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            +  S   +             K DL    ++E    IS  TG G++ LI +I   L N+
Sbjct: 301 DDDPSALSVEIQSGDILRRP--KGDLSGGDSKE---SISGKTGYGVDLLIEEIADSLENR 355

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCV 423
                 +I   +RH   L    + +E+A           +  AE LR+A  +L  + G V
Sbjct: 356 ASGAGVAI--KERHRVALISATQAIEIAREEVILGPDRAEFAAEELRVAIRALASLIGDV 413

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVEQ+LD IF+ FC+GK
Sbjct: 414 DVEQILDDIFANFCLGK 430


>gi|188994926|ref|YP_001929178.1| tRNA modification GTPase TrmE [Porphyromonas gingivalis ATCC 33277]
 gi|188594606|dbj|BAG33581.1| tRNA modification GTPase [Porphyromonas gingivalis ATCC 33277]
          Length = 518

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 149/477 (31%), Positives = 242/477 (50%), Gaps = 46/477 (9%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKK-----KPFPRKASLRYFF 54
           +  K+TI AV+T      I++IR+SG + F++   +   + K     +  PR A      
Sbjct: 50  SFNKDTICAVATAPGVGGIAVIRVSGANAFRLVSPLFLHRGKAIDLSEAKPRTALYGEIM 109

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             D  ++D+ +L  F +P SFT E + E   HG I +   ILE L      RLA PGEF+
Sbjct: 110 EAD-ELIDEVVLTCFHAPHSFTAEHTVEIACHGSIYIRRRILEALI-NQGCRLAQPGEFT 167

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRA+ NG++DL  AE++AD+I+SE++ Q +++M+ + G  S       ++L  +   +E 
Sbjct: 168 RRAYLNGRMDLSSAEAVADIIASESKAQHQMAMKQLRGGYSEELNALREELLRLTGLMEL 227

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDF E EDV+     E+L     ++  +   I   +LG  ++ G  + I+G +N GKS+
Sbjct: 228 ELDFPE-EDVEFADRTELLALCDQIELKLKKLIDSYRLGNAVKRGIPVAIVGTTNVGKST 286

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIV+DI GTTRD +   + + GYL +  DTAG+RET+D +E  GI+R+  
Sbjct: 287 LLNTLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTAGLRETEDTIESLGIERSRS 346

Query: 295 EVENADLILLLKE---INSKKEISFPKNID-------FIFIGTKSDLYSTY--------- 335
           +++ AD+IL + +   I+   ++ + K+I         I +  KS+  +           
Sbjct: 347 KIKEADIILAVVDGTRISEANQLDYIKSIWDEREERTVILLVNKSESLAEADRIGLSEAL 406

Query: 336 -----TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                T      IS+  G G++EL  ++  I+          I S+ RH   L +    L
Sbjct: 407 QTKLSTPTRPIFISAREGRGIDELKGELTQIMETSGANEADLIVSNARHHQLLREAFDAL 466

Query: 391 EMASLNEKDCGLDI------IAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440
                     G D+      +  +LR A  S+G+ITG  +  +  L  IF+ FCIGK
Sbjct: 467 RR-----MRSGFDMGLSTDLLTLDLRHAITSIGEITGREITSDDTLHYIFAHFCIGK 518


>gi|310830137|ref|YP_003962494.1| tRNA modification GTPase TrmE [Eubacterium limosum KIST612]
 gi|308741871|gb|ADO39531.1| tRNA modification GTPase TrmE [Eubacterium limosum KIST612]
          Length = 458

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 241/454 (53%), Gaps = 19/454 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFG-----L 56
            ++TI AV+TG   + I IIR+SGP    +   +      K      S +  +G      
Sbjct: 7   NEDTIAAVATGLGGAGIGIIRVSGPEAVDIVTRLFVNHAGKTVEGAESHKLLYGNILEPE 66

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           DG+I+D+ L+     P S+T ED  E + HGGI  +  IL+ + +    RLA PGEF++R
Sbjct: 67  DGKIIDEVLVSKMKGPFSYTAEDVVEINCHGGIVSLKRILDAVIRS-GARLAEPGEFTKR 125

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ D+IS++TE     S+  + G+LS       D L  + + +EA++
Sbjct: 126 AFLNGRLDLAQAEAVMDIISAKTEKSLEYSVGQLEGKLSQRLTAIDDLLIDVMANVEANI 185

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E  D++  ++  +   I    + +   +   + G+I R G    ILG  N GKSSL 
Sbjct: 186 DYPEY-DIEEVTAAYLNAHIHQAMDMVDMLLKASETGKIYREGITTAILGEPNVGKSSLL 244

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  ++ AIVT+IPGTTRD++   +++ G   KI DTAGIRETD++VE+ G++++   +
Sbjct: 245 NTLLMENKAIVTEIPGTTRDIIEEYINIGGIPFKIIDTAGIRETDNLVEQIGVEKSRQLI 304

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSD--LYSTYTEEYDHLISSFTG 348
           +N +LIL + +++       K  I        IFI  K+D  + +    E    +S    
Sbjct: 305 KNTNLILFMTDLSRPFSEEEKTLIEELDPSKTIFIANKTDSMIENRDVPEGWLPLSLKED 364

Query: 349 EGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIA 406
           EG+E L +K+  ++           I ++ RH++ L + +  L+ A    +    L++++
Sbjct: 365 EGVEALKDKMLEMVMGGSVDQEADYIVNNVRHVHLLEEAMACLKNALGTIDMGMPLELVS 424

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++     + +ITG      +++ IF  FCIGK
Sbjct: 425 IDIQDGLEKIREITGRSVGSDIINQIFKNFCIGK 458


>gi|77464808|ref|YP_354312.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides 2.4.1]
 gi|123590764|sp|Q3IYH3|MNME_RHOS4 RecName: Full=tRNA modification GTPase mnmE
 gi|77389226|gb|ABA80411.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides 2.4.1]
          Length = 428

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 162/437 (37%), Positives = 247/437 (56%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+++    + ++++RLSGP   +  +       P  R A+LR     +G +LD+ L
Sbjct: 2   DTIYALASARGKAGVAVLRLSGPRSHEAVQA-FGVPLPSLRHAALRRLTW-NGEVLDEAL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +++F +  SFTGE SAE H+HG  A V+ +L  L+ +P LR A  GEF+RRA ENG++DL
Sbjct: 60  VLLFGAGASFTGETSAELHLHGSPAAVSSVLRVLSGLPGLRAAEAGEFTRRALENGRLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QRR +M   SG +     +W   L    + +EA +DF++ EDV 
Sbjct: 120 AQVEGLADLIDAETEAQRRQAMRVFSGAIGERAERWRADLIRAAALLEATIDFAD-EDVP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EVL  I  L  D+   +   ++ E IR+G+++ I+G  NAGKS+L NALA+++ A
Sbjct: 179 VDVTPEVLTLIDGLLADLRREVDGSRIAERIRDGFEVAIVGAPNAGKSTLLNALARREAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++I GTTRDV+ + +DL+G  V   DTAG+R+T D+VE  GI+R     + ADL + L
Sbjct: 239 ITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRDTSDLVESLGIERAVTRAKAADLRVFL 298

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            + +S          D + +  K+DL           +S  TGEG+ EL+  I   L  +
Sbjct: 299 LD-DSGPLSGITVQADDLVVQGKADLRP----GQGLRLSGRTGEGVPELVAAIGERLLGR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
                    + +RH   + + +  +E   A L       ++ A++LR A  SL  + G V
Sbjct: 354 TAGAGS--LTRERHRLAIERAIGAMESVRAELLRGQQHTELAADDLRRAIRSLDSLVGRV 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LL  IF+ FCIGK
Sbjct: 412 DVESLLGEIFASFCIGK 428


>gi|332886080|gb|EGK06324.1| tRNA modification GTPase TrmE [Dysgonomonas mossii DSM 22836]
          Length = 463

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 151/459 (32%), Positives = 239/459 (52%), Gaps = 28/459 (6%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG---LDGRILD 62
           I A+ST A    I+IIRLSG  C ++ + + +  K K      +    FG    D  +LD
Sbjct: 7   IAAISTPAGIGGIAIIRLSGNGCIELVDAVFRSFKGKKLADAKAYTVHFGSLIKDNVVLD 66

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
             L+ VF +P SFTGED  E   HG I +   IL+ L       LA PGEF++RAF NGK
Sbjct: 67  DVLVSVFRNPHSFTGEDIIEISCHGSIYIQQNILQLLI-SKGASLAQPGEFTQRAFLNGK 125

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AES+ADLI+S +    RL+M  M G  S+   +   +L +  S IE +LDFSE E
Sbjct: 126 MDLSQAESVADLIASSSAATHRLAMNQMRGGFSNKLIELRTELLNFTSLIELELDFSE-E 184

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV+  +   +      +++ I        +G  +++G  + I+G +NAGKS+L N L  +
Sbjct: 185 DVEFANRDHLKEAAHQIESHIKKLADSFSIGNAVKSGIPVAIIGETNAGKSTLLNLLLHE 244

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRDV+   ++++G   ++ DTAGIR+T D +E  GI+RTF ++E A+++
Sbjct: 245 EKAIVSDIHGTTRDVIEDTINIQGLTFRLIDTAGIRDTHDEIESLGIERTFKKIEQANIV 304

Query: 303 LLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-----------HL 342
           L + +           S+K +    +   + +  K D+ S   +                
Sbjct: 305 LWVADCETINEHIEELSQKILPVVGDRKLVLVFNKVDIISAERKAEKEKLLLDKIPERVF 364

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401
           IS+   +G  +L + +    +         I ++ RH   L   +  ++  S   E    
Sbjct: 365 ISAKYEQGTNQLEDLLVKTANIPEISEQDIIVTNVRHYEALQNALTAIKRVSEGLELKIS 424

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D +++++R     LG+ITG +  +++L  IFSKFCIGK
Sbjct: 425 GDFLSQDIRECLYYLGEITGQISTDEILGNIFSKFCIGK 463


>gi|319940690|ref|ZP_08015032.1| tRNA modification GTPase mnmE [Sutterella wadsworthensis 3_1_45B]
 gi|319805841|gb|EFW02608.1| tRNA modification GTPase mnmE [Sutterella wadsworthensis 3_1_45B]
          Length = 462

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 149/462 (32%), Positives = 236/462 (51%), Gaps = 27/462 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPS--CFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           ++K  I A++T      I +IRLS  +     +   +  ++   PR+  L  F   +  +
Sbjct: 4   NDKTPIIAIATAPGRGGIGVIRLSFEADLADPILAALFPQRSIEPRRVQLLPFLDENNAL 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEFSRRA 117
           LD  +++ F +P S+TGE   E   HGG  ++  IL           LR+A PGEF++RA
Sbjct: 64  LDHAVVLYFSAPASYTGESVLEIQAHGGPVLLKLILRAALTKLAFCGLRIAEPGEFTKRA 123

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE+++ LI + +E     +   +SG+ S       D L   R+  EA LD
Sbjct: 124 FLNGRMDLTQAEAVSGLIDAASEAAAHAAARSLSGDFSREVHAAGDLLDEARALSEASLD 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E ED+++   K++       +  +   ++  + G ++ +G  + ++G  N GKSSL N
Sbjct: 184 FPE-EDLEDLKEKQIFTRAREAQIKLEGLLANARRGVVLADGITVALVGAPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           ALA  +VAIVT+I GTTRD +      +G  ++I DTAG+RET+DIVE++GI+RT   + 
Sbjct: 243 ALAGDEVAIVTEIAGTTRDRIEHWTAFDGIPLRIVDTAGMRETNDIVEQKGIERTLKAIS 302

Query: 298 NADLILLLKEINSK-----------KEISFPKNIDFIFIGTKSDLYSTY------TEEYD 340
            AD++L L + + +           +E + P     + +  K D  S         +   
Sbjct: 303 EADIVLHLVDASGRIPDDEALLTRVREYARP-GTPLLIVANKIDSISLERRNEYCDDASI 361

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD- 399
             IS+ T EGLE L  ++   + +          + +RHL  L     +L  A       
Sbjct: 362 VPISAKTHEGLEALKARVLEYV-DMAGGTEGVFLARERHLECLRMASAHLSTALEMSTSP 420

Query: 400 -CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            C ++I AE LRLA  +LG++ G  D E LL IIFS+FCIGK
Sbjct: 421 FCMMEIFAEELRLAGRALGELLGETDAEDLLGIIFSRFCIGK 462


>gi|74318842|ref|YP_316582.1| tRNA modification GTPase TrmE [Thiobacillus denitrificans ATCC
           25259]
 gi|123611091|sp|Q3SF39|MNME_THIDA RecName: Full=tRNA modification GTPase mnmE
 gi|74058337|gb|AAZ98777.1| tRNA modification GTPase TrmE [Thiobacillus denitrificans ATCC
           25259]
          Length = 446

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/448 (33%), Positives = 242/448 (54%), Gaps = 14/448 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +    + I AV+T      + ++R+SGP    +   I  +  P PR  +   F    G  
Sbjct: 5   LPPRPDLIAAVATAPGRGGVGVVRVSGPDVGPLAVAILGR-LPEPRHVTYCRFLDRAGAP 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + F +P SFTGE   E   HGG  V++ IL+   ++   RLA PGEFSRRAF N
Sbjct: 64  LDEGIALYFAAPHSFTGEHVLELQGHGGPVVLDLILQRCLEL-GARLAEPGEFSRRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI + +    R ++  +SGE S+   + +++L  +R+ +EA LDF +
Sbjct: 123 GKLDLAQAEAVADLIDAASAEAARSALRSLSGEFSARIDELVEQLVRLRTLVEATLDFPD 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++      +    +  +   +++  SQ + G ++R G  +V++G  N GKSSL N LA
Sbjct: 183 -EEIDFLEQADAFGRLKAIGTSVAAVRSQARQGVLLREGLTVVLVGQPNVGKSSLLNRLA 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D AIVT+I GTTRD +   + +EG  + + DTAG+RET D +E+ GI R++  VE AD
Sbjct: 242 GFDAAIVTEIAGTTRDTVREAIQIEGVPIHVIDTAGLRETSDPIEQLGIARSWEAVEKAD 301

Query: 301 LILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEY--DHLISSFTGEGLE 352
           + LLL +       +  + ++   ++  + +  K D+          +  +S+ +GEG++
Sbjct: 302 VALLLVDAAHGVGAHEAQILAKLPDVVRLTVHNKIDVAGEAPRATADEIWLSAKSGEGVD 361

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            L  K+      +      +  +  RHL  L +  R++E A    +   L++ AE LRLA
Sbjct: 362 LLRAKLLQAAGWQAA-GEGAFMARTRHLDALDRAARHIEQAGAVARQ--LELFAEELRLA 418

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +L +ITG    + LL  IF  FCIGK
Sbjct: 419 QAALAEITGEFSADALLGEIFGSFCIGK 446


>gi|99082704|ref|YP_614858.1| tRNA modification GTPase TrmE [Ruegeria sp. TM1040]
 gi|122984065|sp|Q1GCM0|MNME_SILST RecName: Full=tRNA modification GTPase mnmE
 gi|99038984|gb|ABF65596.1| tRNA modification GTPase trmE [Ruegeria sp. TM1040]
          Length = 428

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/437 (36%), Positives = 245/437 (56%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETIFA++T    + +++IR+SGP   ++ E + ++  P  R           G ILD+ L
Sbjct: 2   ETIFALATAQGKAGVAVIRVSGPHAIEIGEKLTRRTLP-ARGMIFSKLKDSAGEILDEAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F SP+SFTGE+  EF +HG IAVV+ ++  + +    RLA+PGEF+RRA +NGK+DL
Sbjct: 61  VLSFTSPDSFTGENIVEFQLHGSIAVVSAVMSAIEETGVARLADPGEFTRRALDNGKLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ +   ++G L  L  +W   L    S IE  +DF++ E+V 
Sbjct: 121 TQVEGLADLIDAETEAQRKQAQVILAGTLGDLADRWRTDLIRAASLIEVTIDFAD-EEVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV   +  + +DI   +    + E IR G+++ I+G  N GKS+L NALA +  A
Sbjct: 180 VDVTPEVKQLLSGVLHDIEKEVDGVAIAERIREGFEVAIVGSPNVGKSTLLNALAGRTAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRDV+ + +DL G  V + DTAG+RETDD VE  GI+      E AD+ + L
Sbjct: 240 ITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETDDHVEGIGIRLAQERAERADIRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E +    I   +    + +  K+D   +         S  TG+G+++L+++I   L N+
Sbjct: 300 AEEDESFSIQMREGD--LRLLPKADERRSAKGAI----SGRTGQGVDDLVSRISDTLRNR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCV 423
                  I +  RH   +++ V  L  A    +      D+ AE++R A  +L  + G +
Sbjct: 354 TAH--DGIATRARHRETMNRAVLSLRQAIEVVEQGPEFYDLAAEDMRSAIRALELLVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           +VE LLD IFS FC+GK
Sbjct: 412 NVENLLDEIFSSFCLGK 428


>gi|304437938|ref|ZP_07397884.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369078|gb|EFM22757.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 491

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/460 (30%), Positives = 231/460 (50%), Gaps = 25/460 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK------KPFPRKASLRYFFGLD 57
            ++TI  ++T      I IIR+SG     V   + +           P  A   +    D
Sbjct: 34  TEDTISQIATPHGAGGIGIIRVSGEDALGVARRVFRPAAGGTLGDIAPYTARYGHIVAAD 93

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ++D+ +L+   +P S+TGED+AE   HGG  V+  +L    +    R A  GEF++RA
Sbjct: 94  GTVIDECILLYMRAPHSYTGEDTAELQCHGGAVVLREVLLRTWEA-GARPAEAGEFTKRA 152

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F +G++DL  AES+ +LI++++      + E ++G  S        ++    + IEA +D
Sbjct: 153 FLHGRLDLARAESVMELIAAKSTRAAHAARERLAGAFSHAVTDIRTQILSAVAHIEAGID 212

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E +D+   S++ +  +I      +   ++    G ++R+G K VI+G  N GKSSL N
Sbjct: 213 FPE-DDIPAASAERLAAEIDAASAAVRRLLAGADTGRVLRDGVKTVIVGRPNVGKSSLLN 271

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL   + AIVTD+PGTTRDV+  ++ + G  +++ DTAG+R  +D VE+ G+ RT   + 
Sbjct: 272 ALLGMERAIVTDVPGTTRDVIEEEISVAGIPLRLLDTAGLRAAEDAVEQIGVARTEQHLM 331

Query: 298 NADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEE-------YDHL 342
           +A+LIL + + +                   D I + +K D  S  + E           
Sbjct: 332 DAELILAVFDASEPLTAEDHALLARLSAAAADTIILCSKEDRPSVLSAEDFAAVAAPVLR 391

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRY-LEMASLNEKDC 400
           IS+  G GL+ L  +I + +  +   L   ++P+ +R +  L +   +    A     D 
Sbjct: 392 ISAQEGTGLDALREEIAAHIVRQEGDLSDGALPNKEREIEALRRAETHLAAAAETLAADL 451

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G D ++ +LR A  +LG+I G      L+D IFS+FCIGK
Sbjct: 452 GTDFVSIDLRAAYDALGEILGETVDTDLIDRIFSEFCIGK 491


>gi|119356003|ref|YP_910647.1| tRNA modification GTPase TrmE [Chlorobium phaeobacteroides DSM 266]
 gi|205829132|sp|A1BCU6|MNME_CHLPD RecName: Full=tRNA modification GTPase mnmE
 gi|119353352|gb|ABL64223.1| tRNA modification GTPase trmE [Chlorobium phaeobacteroides DSM 266]
          Length = 475

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/464 (33%), Positives = 253/464 (54%), Gaps = 31/464 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFG--LDG- 58
           + I A++T     A++++R+SG + F +   + +K +    P          FG   DG 
Sbjct: 14  DPIAAIATPLGVGALAVVRISGATAFDIAGRVFRKARDPHQPLSETPGYTAHFGRLYDGL 73

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
            ++D+ + +VF SP SFT ED  EF  HGG  V   +L+ L      RLA PGEF+RRAF
Sbjct: 74  TLIDEVIALVFRSPSSFTAEDMVEFTCHGGPVVTRHVLQ-LLLDNGCRLAEPGEFTRRAF 132

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGKIDLL+AE++ ++I + +E   R ++  M G+LS+  G   +KL    + +E +LDF
Sbjct: 133 LNGKIDLLQAEAIGEMIHARSESAYRTAVIQMKGDLSATLGALREKLLRSCALLELELDF 192

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           SE EDV+  S +E+  +I  L+++++  +   + G ++  G   VI G  NAGKS+L N 
Sbjct: 193 SE-EDVEFQSREELRVEIASLQSEVARLVDSYQHGRLLTEGVATVIAGRPNAGKSTLLNT 251

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIV+ +PGTTRD +      +  + +++DTAG+RET + +E EG++R+ +++  
Sbjct: 252 LLGEERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRETGEEIEHEGVRRSRMKMAE 311

Query: 299 ADLILLLKEINSK------KEISFPK----NIDFIFIGTKSDLYSTYT-------EEYD- 340
           ADL+L L +++ +      KEI   K    +  F+ +  K DL    T       EE   
Sbjct: 312 ADLLLYLLDLSREGMAEEIKEIVALKAAHASSKFLVVANKIDLVPDATTLLCRLGEEAGC 371

Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMAS-LN 396
               IS+    G++EL +++ S++    K    S+  +  RH   L      L  A  L 
Sbjct: 372 EAIGISARQKLGIDELKSRMSSMVEGLDKLHEASVLVTSLRHYEALRNAGDALRNAQNLL 431

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++    ++IA  LR A   +G+ITG V  E++L  IF +FCIGK
Sbjct: 432 DEQADTELIAFELRAALDYVGEITGKVVNEEILHAIFERFCIGK 475


>gi|291543431|emb|CBL16540.1| tRNA modification GTPase TrmE [Ruminococcus sp. 18P13]
          Length = 454

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/454 (30%), Positives = 230/454 (50%), Gaps = 22/454 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA------SLRYFFGLDGRI 60
           TI A+ST      I++IR+SGP    V   +       P         +       DG  
Sbjct: 3   TIAAISTPNAVGGIAVIRVSGPDALTVAARVFTPANGKPVSGMAGYTCAYGTVLDQDGNP 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +L VF +P S+TGED+AE   HGG+ +   +L  L        A PGEF++RAF  
Sbjct: 63  VDDVVLTVFRAPHSYTGEDTAELSCHGGLFLSRQVL-RLCFAAGAEPAQPGEFTKRAFLA 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+ L +AES+ DLIS++ + Q R +     G +        D+L  + S + A +D+ E
Sbjct: 122 GKLSLTQAESVMDLISAQGDAQLRCARSLREGAVFRRIHSCTDQLVVLLSDLAAWVDYPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+ +     +   +  L  D+S+  S    G I+R G   VI+G  N GKS+L N L+
Sbjct: 182 -EDIPSVEPDALDASLTALHADLSAIASTYDYGRILREGINTVIVGRPNVGKSTLMNRLS 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + +IVTDI GTTRDV+   + L    +++SDTAG+R+T D +E+ G++  +  +E A+
Sbjct: 241 GFERSIVTDIAGTTRDVVEESVRLGDLTLRLSDTAGLRDTPDRIEQLGVEIAYRRLEEAE 300

Query: 301 LILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEE-------YDHLISSFT 347
           LIL + +  +      ++ IS       + I  KSD  S+ T +       Y   IS+ T
Sbjct: 301 LILAVFDSTAPLLPQDRELISRIGKRRAVAICNKSDAGSSLTPDELSAHFAYVIPISAKT 360

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
           GEG+E+L + + ++  +        + S++R    + + + ++  A         LD + 
Sbjct: 361 GEGMEQLSSALHALFLSDAPDPQAGVLSNERQKLCVERAMEHISAAIAAVRSGEPLDCVT 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L  A+ +L ++TG    E +++ +F++FC+GK
Sbjct: 421 VLLDDAANTLLELTGERATEAVVEQVFARFCVGK 454


>gi|255532210|ref|YP_003092582.1| tRNA modification GTPase TrmE [Pedobacter heparinus DSM 2366]
 gi|255345194|gb|ACU04520.1| tRNA modification GTPase TrmE [Pedobacter heparinus DSM 2366]
          Length = 456

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/456 (31%), Positives = 231/456 (50%), Gaps = 21/456 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-ASLRYFFGLDGRI-L 61
             ETI A+ST     AI +IRLSG     +   +   K    +   ++ +    DG I +
Sbjct: 3   TNETIVALSTPPGLGAIGVIRLSGKDAIAITNSVFSGKNLLAQASHTIHFGLIKDGDIVI 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+ +F +P+S+T E+  E   HG   ++  I   L        A PGEF+ RAF NG
Sbjct: 63  DEVLVSLFVAPKSYTKENVVEISCHGSNYIIQQI-INLLIRKGASAAKPGEFTLRAFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
            +DL +AE++ADLISS++     ++M  + G  S+      ++L H  S IE +LDF+E 
Sbjct: 122 GLDLSQAEAVADLISSDSAAAHSVAMNQLRGGFSTELNVLREQLIHFASMIELELDFAE- 180

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           EDV+  +  ++   I  +   ++  I   +LG +I+ G   VI G  NAGKS+L NAL  
Sbjct: 181 EDVEFANRGQLQELINKITLVLNKLIRSFELGNVIKMGINTVIAGRPNAGKSTLLNALLN 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIV++I GTTRD +   L++ G   ++ DTAGIRE  D +E  G+++T  ++  + +
Sbjct: 241 EDRAIVSEIAGTTRDTIEEVLNINGINFRLIDTAGIREATDAIEVIGVEKTMQKISQSAV 300

Query: 302 ILLLKEI------NSKKEISFPKNIDFIF--IGTKSDL-YSTYTEEYD-------HLISS 345
           ++ L ++        + +I         F  +  K DL YS   +E           IS+
Sbjct: 301 LVYLFDVVNISATEVRDDILSLHKPGIAFIAVANKMDLSYSDRLKELKLPSDISFISISA 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDI 404
              + +E+    +  I          ++ ++ RH+  L +T   L   +   ++    D 
Sbjct: 361 KEHQNIEDFKQLLYEIAVGDKLSDNHTMVTNIRHVEALEKTRAALNNVAEGLRNPVTSDF 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A +++ A   LG ITG V  + LL+ IFSKFCIGK
Sbjct: 421 LAMDIKQALHYLGLITGVVSTDDLLENIFSKFCIGK 456


>gi|289422583|ref|ZP_06424426.1| tRNA modification GTPase TrmE [Peptostreptococcus anaerobius 653-L]
 gi|289157155|gb|EFD05777.1| tRNA modification GTPase TrmE [Peptostreptococcus anaerobius 653-L]
          Length = 459

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/467 (30%), Positives = 235/467 (50%), Gaps = 42/467 (8%)

Query: 5   KETIFAVSTGALPS---------AISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYF 53
            +TI A++T              A             +   I K   K+      +    
Sbjct: 4   DDTIAAIATAPGEGGIGIIRISGA---------DSIAIASSIFKPFYKENLLDYPNRSLV 54

Query: 54  FGL---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANP 110
           +G      R++D+ L+     P S+T ED  E + HGG   V  ILE + K    RLA+P
Sbjct: 55  YGNIVDSDRVIDEVLIARMEGPNSYTAEDVVEINCHGGFISVKKILELVLK-KGARLADP 113

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           GEF++RAF NG+IDL +AE++ D+I+++T+    ++   + G LS       + +T + +
Sbjct: 114 GEFTKRAFLNGRIDLSQAEAVIDIINAKTDQSHDIAQTQLEGALSQKVRSLRNMITEVLA 173

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            +E  +D+ E ED++  + KE+ +    ++ ++         G+I+R G K  ILG  N 
Sbjct: 174 QVEVSIDYPE-EDIEFITYKELTDKTSQIQKEVVKMYETSDTGKILREGLKTAILGKPNV 232

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSL N +  ++ AIVT+I GTTRDV+   ++++G  +KI DTAGIRETDDIVEK G++
Sbjct: 233 GKSSLMNWILGENRAIVTEIAGTTRDVIEEFVNIKGIPLKIVDTAGIRETDDIVEKIGVE 292

Query: 291 RTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYST---------Y 335
           ++   ++++DL+L++ + + + E      +        + +  K DL S           
Sbjct: 293 KSRDHMKSSDLVLVVLDSSRELEEDDLEILDAINPKKTLVLINKIDLESRLDMDKVKEYI 352

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
            EE    IS+   +GLE + +KI++++   +       + ++ RH   + + +  +  A 
Sbjct: 353 AEENIIHISAMENKGLESIHDKIETMVYEGRVSNKGDVMITNTRHKDAIYKAMNSINDAI 412

Query: 395 LNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D    D I  +L+ A  SLG I G    E LLD IF  FCIGK
Sbjct: 413 KGLEDHMSYDFIGVDLKDAWDSLGFINGDTVTEDLLDTIFKNFCIGK 459


>gi|146278700|ref|YP_001168859.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides ATCC 17025]
 gi|205415803|sp|A4WVZ0|MNME_RHOS5 RecName: Full=tRNA modification GTPase mnmE
 gi|145556941|gb|ABP71554.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides ATCC 17025]
          Length = 428

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 159/437 (36%), Positives = 253/437 (57%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+++    + ++++RLSGP  ++          P  R+A+LR     +G +LD+ L
Sbjct: 2   DTIYALASARGKAGVAVLRLSGPQAYEAVAA-FGVSLPEVRRAALRRLTW-NGEVLDEAL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +++F    SFTGE SAE H+HG  A V+ +L+ L+++P LRLA+ GEF+RRA +NG++DL
Sbjct: 60  ILLFAEGASFTGERSAEIHLHGSAAAVSSVLQALSELPGLRLADAGEFTRRALDNGRLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADL+ SETE QRR +M   SG +     +W   L    + +EA +DF++ EDV 
Sbjct: 120 AQVEGLADLLDSETEAQRRQAMRVFSGAIGKRTERWRSDLIRAAALLEATIDFAD-EDVP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV   +  L +D+   +   ++ E IR+G+++ I+G  NAGKS+L NALA+++ A
Sbjct: 179 VDVTPEVRGLLERLISDLKREVDGSRVAERIRDGFEVAIIGAPNAGKSTLLNALAQREAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +++ GTTRDV+ + ++L G  V + DTAG+RET D VE  GI R       ADL + L
Sbjct: 239 ITSEVAGTTRDVIEVRMNLGGLAVTLLDTAGLRETHDPVEALGIDRALTRARAADLRIFL 298

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            +  S + +      D + +  K+D   T        +S  TG+G++EL+  ++  L  +
Sbjct: 299 LD-QSGEVVGLEPEADDLIVQGKADTRLT----RGLSVSGLTGDGIQELVEALQDRLLAR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD--CGLDIIAENLRLASVSLGKITGCV 423
                    + +RH   + + +R +E A +         ++ AE+LRLA  +L  + G V
Sbjct: 354 TAGAGSF--TRERHRLAMERAIRAMESAHVQLMQGVPHPELAAEDLRLALRALDSLVGRV 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LL  IFS FCIGK
Sbjct: 412 DVEALLGEIFSSFCIGK 428


>gi|213155396|ref|YP_002317441.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB0057]
 gi|213054556|gb|ACJ39458.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB0057]
          Length = 406

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 155/410 (37%), Positives = 235/410 (57%), Gaps = 22/410 (5%)

Query: 48  ASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107
           A  R F+  DG I+D+G+++ FP+P SFTGED  E   HGG  + N +L  L ++     
Sbjct: 2   AGFRKFYDTDGSIMDEGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GAIA 60

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A  GEFS RAFENGK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL H
Sbjct: 61  AKAGEFSMRAFENGKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIH 120

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA +DF E E++   +  ++L  +  ++  + +  +  + G+++R G ++VI G 
Sbjct: 121 LRLHVEAAIDFPE-EEIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGK 179

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL NALA  + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKE
Sbjct: 180 PNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKE 239

Query: 288 GIKRTFLEVENADLILLLKEINSKKEI---------SFPKNIDFIFIGTKSDLYSTYTEE 338
           GI+R   E+E ADL+LL+ ++N   +             +    + IG K DL     E 
Sbjct: 240 GIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEI 299

Query: 339 YDHL------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
            D+       +S+    G++ L++ I +     F     +  +  RHL  + +T  YL  
Sbjct: 300 SDYQGFRHITVSAKQEMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAE 357

Query: 393 A--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   L   + G +++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 358 AREQLVIFNAG-ELVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 406


>gi|126463651|ref|YP_001044765.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides ATCC 17029]
 gi|205415802|sp|A3PNS7|MNME_RHOS1 RecName: Full=tRNA modification GTPase mnmE
 gi|126105315|gb|ABN77993.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides ATCC 17029]
          Length = 428

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 162/437 (37%), Positives = 247/437 (56%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+++    + ++++RLSGP   +  +       P  R A+LR     D  +LD+ L
Sbjct: 2   DTIYALASARGKAGVAVLRLSGPRSHEAVQA-FGVLLPPLRHAALRRLTWND-EVLDEAL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +++F +  SFTGE SAE H+HG  A V+ +L  L+ +P LR A  GEF+RRA ENG++DL
Sbjct: 60  VLLFGAGASFTGETSAELHLHGSPAAVSSVLRVLSGLPGLRAAEAGEFTRRALENGRLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QRR +M   SG +     +W   L    + +EA +DF++ EDV 
Sbjct: 120 AQVEGLADLIDAETEAQRRQAMRVFSGAIGERAERWRADLIRAAALLEATIDFAD-EDVP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EVL  I  L  D+   +   ++ E IR+G+++ I+G  NAGKS+L NALA+++ A
Sbjct: 179 VDVTPEVLTLIDGLLADLRREVDGSRIAERIRDGFEVAIVGAPNAGKSTLLNALARREAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++I GTTRDV+ + +DL+G  V   DTAG+R+T D+VE  GI+R     + ADL + L
Sbjct: 239 ITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRDTSDLVESLGIERAVTRAKAADLRVFL 298

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            + +S          D + +  K+DL       +   +S  TGEG+ EL+  I   L  +
Sbjct: 299 LD-DSGPLPGITVQADDLVVQGKADLRP----GHGLRLSGRTGEGVPELVAAIGERLLGR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
                    + +RH   + + +  +E   A L       ++ A++LR A  SL  + G V
Sbjct: 354 TAGAGS--LTRERHRLAIERAIGAMESVRAELLRGQQHTELAADDLRRAIRSLDSLVGRV 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LL  IF+ FCIGK
Sbjct: 412 DVESLLGEIFASFCIGK 428


>gi|148243337|ref|YP_001228494.1| tRNA modification GTPase TrmE [Synechococcus sp. RCC307]
 gi|205829180|sp|A5GW82|MNME_SYNR3 RecName: Full=tRNA modification GTPase mnmE
 gi|147851647|emb|CAK29141.1| tRNA modification GTPase [Synechococcus sp. RCC307]
          Length = 453

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 141/432 (32%), Positives = 222/432 (51%), Gaps = 17/432 (3%)

Query: 22  IIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPSPESFT 76
           I+R+SGP    +   + +       + S R  +G      +G ++D+ LL++  +P SFT
Sbjct: 26  IVRISGPQAEAIGRQLFQPAGKQSWE-SHRVLYGHVNDPANGDVVDEVLLLLMRAPRSFT 84

Query: 77  GEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLIS 136
            E   EFH HGG+  V  +LE L      R A PGEFS+RAF NG++DL  AE++++L+S
Sbjct: 85  RETVVEFHGHGGLVAVQRLLE-LVLAAGARRALPGEFSQRAFLNGRLDLTRAEAISELVS 143

Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI 196
           + +     L+M G+ G L        D+L      +EA +DF E  D+ +     V   +
Sbjct: 144 ARSRRAAELAMAGLDGGLQQRIEALRDQLLDQLCELEARVDFEE--DLPSLDGAAVCTAL 201

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             ++  +   +  G+  +++R+G ++ I+G  N GKSSL NAL+  + AIVTD+PGTTRD
Sbjct: 202 RDVQQALDQLVLDGQQAQLLRDGLRVAIIGRPNVGKSSLLNALSGHERAIVTDLPGTTRD 261

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-------N 309
           +L  DL L+G  + + DTAGIR T D VE+ GI+R+     +AD ++LL ++       +
Sbjct: 262 LLDYDLVLQGVPITLLDTAGIRSTADRVEQLGIERSRAAFASADAVVLLYDLSRGWSPDD 321

Query: 310 SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           S      P     + +G KSDL +         IS+ +G GL EL + +  +     +  
Sbjct: 322 SALRNEVPDGTPLLVVGNKSDLAAEPATTQGLAISARSGLGLAELSSALLKLCGLSGEGQ 381

Query: 370 PFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428
              +  ++R     +     L             D    +LR A  +LG+ITG    E +
Sbjct: 382 GLLLALNQRQCDLAAAASAALGRSQQAARDGLPWDFWTIDLREAIRALGEITGAEITEAV 441

Query: 429 LDIIFSKFCIGK 440
           LD +FS+FCIGK
Sbjct: 442 LDRVFSRFCIGK 453


>gi|260753419|ref|YP_003226312.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552782|gb|ACV75728.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 434

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 164/443 (37%), Positives = 253/443 (57%), Gaps = 20/443 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGL 65
           TIFA+S+G  P+ I++IR+SG +       + +KK P  R+A LR  +  D G  LD+ L
Sbjct: 3   TIFALSSGRPPAGIAVIRISGSAAADTACLLTRKKIPEARRAVLRNLYDPDSGEQLDQSL 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+  P+P++ TGED  E HVHGG AV++ +L+ L K+P+LR A  GEF+RRAFENG I L
Sbjct: 63  LLWLPAPKTVTGEDLLELHVHGGRAVIDAVLKTLEKLPDLRPAEAGEFTRRAFENGVISL 122

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE L DL+++ET  QRR ++    G L      W D+L  +   IEA  DF+E+ +  
Sbjct: 123 HEAEGLGDLLTAETASQRRAALMMSGGALGQQISAWQDRLLALSGQIEASFDFAEDIEED 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKL------GEIIRNGYKIVILGHSNAGKSSLFNAL 239
              S++ L     +K+ I++ I++ +        E +R+G ++V+ G  NAGKS+L NAL
Sbjct: 183 ETESRQHL---AVMKDKIAALIAEHRQFENRPTMERLRDGLRVVLAGRPNAGKSTLINAL 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D+AI   I GTTRDV+ +   L+G  ++ SDTAG+ E+DD++EK GI+R    +E A
Sbjct: 240 TGQDIAITAPIAGTTRDVIEVSFALKGIPMRFSDTAGLHESDDLIEKAGIERAQRAIEEA 299

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST--YTEEYDHLISSFTGEGLEELINK 357
           D++L L +           + + + +  + DL       E+ D  +S+ TGEG++ L  K
Sbjct: 300 DILLWLGQAEEAP----KTDGEVLVLYPQIDLPERHPIPEKIDIAVSAVTGEGIDRLQEK 355

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           +  I   K       +  ++R    + +    L +A   E    + IIAE +R +     
Sbjct: 356 LVEI-GKKILPKEDEVTLNRRQRQLVKEAADSLALALDAE---DMLIIAEAIRQSCRCYD 411

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           ++TG   VE +LD +FS+FCIGK
Sbjct: 412 RLTGKAGVENMLDNLFSRFCIGK 434


>gi|15605431|ref|NP_220217.1| tRNA modification GTPase TrmE [Chlamydia trachomatis D/UW-3/CX]
 gi|166154040|ref|YP_001654158.1| tRNA modification GTPase TrmE [Chlamydia trachomatis 434/Bu]
 gi|166154915|ref|YP_001653170.1| tRNA modification GTPase TrmE [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237803128|ref|YP_002888322.1| tRNA modification GTPase TrmE [Chlamydia trachomatis B/Jali20/OT]
 gi|237805049|ref|YP_002889203.1| tRNA modification GTPase TrmE [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311527|ref|ZP_05354097.1| tRNA modification GTPase TrmE [Chlamydia trachomatis 6276]
 gi|255317828|ref|ZP_05359074.1| tRNA modification GTPase TrmE [Chlamydia trachomatis 6276s]
 gi|255349090|ref|ZP_05381097.1| tRNA modification GTPase TrmE [Chlamydia trachomatis 70]
 gi|255503627|ref|ZP_05382017.1| tRNA modification GTPase TrmE [Chlamydia trachomatis 70s]
 gi|255507306|ref|ZP_05382945.1| tRNA modification GTPase TrmE [Chlamydia trachomatis D(s)2923]
 gi|301335241|ref|ZP_07223485.1| tRNA modification GTPase TrmE [Chlamydia trachomatis L2tet1]
 gi|14195259|sp|O84704|MNME_CHLTR RecName: Full=tRNA modification GTPase mnmE
 gi|205829133|sp|B0B8S4|MNME_CHLT2 RecName: Full=tRNA modification GTPase mnmE
 gi|205829134|sp|B0BAF3|MNME_CHLTB RecName: Full=tRNA modification GTPase mnmE
 gi|3329152|gb|AAC68293.1| Thiophene/Furan Oxidation Protein [Chlamydia trachomatis D/UW-3/CX]
 gi|165930028|emb|CAP03511.1| tRNA modification GTPase [Chlamydia trachomatis 434/Bu]
 gi|165930903|emb|CAP06465.1| tRNA modification GTPase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231273349|emb|CAX10264.1| tRNA modification GTPase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274362|emb|CAX11157.1| tRNA modification GTPase [Chlamydia trachomatis B/Jali20/OT]
 gi|289525742|emb|CBJ15223.1| tRNA modification GTPase [Chlamydia trachomatis Sweden2]
 gi|296435314|gb|ADH17492.1| tRNA modification GTPase TrmE [Chlamydia trachomatis E/150]
 gi|296436242|gb|ADH18416.1| tRNA modification GTPase TrmE [Chlamydia trachomatis G/9768]
 gi|296437171|gb|ADH19341.1| tRNA modification GTPase TrmE [Chlamydia trachomatis G/11222]
 gi|296438102|gb|ADH20263.1| tRNA modification GTPase TrmE [Chlamydia trachomatis G/11074]
 gi|296439031|gb|ADH21184.1| tRNA modification GTPase TrmE [Chlamydia trachomatis E/11023]
 gi|297140603|gb|ADH97361.1| tRNA modification GTPase TrmE [Chlamydia trachomatis G/9301]
 gi|297748829|gb|ADI51375.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Chlamydia trachomatis D-EC]
 gi|297749709|gb|ADI52387.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Chlamydia trachomatis D-LC]
          Length = 444

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 145/445 (32%), Positives = 224/445 (50%), Gaps = 13/445 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI-LDK 63
            +TI A++T     +I+I+R+SGP    + + I           +          + +D+
Sbjct: 4   NDTITAIATPPGEGSIAIVRVSGPDAISISDRIFSGNIAGYASHTAHLGTVSHNAVCIDQ 63

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L++V  +P SFTGED  EF  HGG    + I+  L      R A PGEFS+RAF NGKI
Sbjct: 64  ALVLVMRAPRSFTGEDIVEFQCHGGYFACSQIVNALL-AEGARAALPGEFSQRAFLNGKI 122

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE- 182
           DL++AE++  LI+++     R++     G  S         +    ++IE   DF EE+ 
Sbjct: 123 DLIQAEAIQQLIAADNIDAFRIAQNQFQGHTSQAISSISSLIIEALAYIEVLADFPEEDI 182

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           + ++   K  + + L + +++   +S    G+ +  G  IV+ G  NAGKSS+ NAL +K
Sbjct: 183 ETEDSLPKHRIMEALSITDEL---LSSFDEGQRLAQGTSIVLAGLPNAGKSSILNALTQK 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDIPGTTRD+L  +  L+G  +++ D+AG+RET+++VEKEGI R    +  A+ I
Sbjct: 240 NRAIVTDIPGTTRDILEENWVLQGKNLRLIDSAGLRETENLVEKEGIARAREAMSQAEGI 299

Query: 303 LLLKEINSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDHLI---SSFTGEGLEELINK 357
           L + + +       +       I +  K D+ S    E        S+ TGEGL EL   
Sbjct: 300 LWVVDASQPLPEFPTILYQKPTILLWNKCDIVSPPQIEVPFQQISVSAKTGEGLLELKQA 359

Query: 358 IKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVS 415
           ++  L+  +  K         RH   L      L  A     +    + IA +LR A  S
Sbjct: 360 LQKWLNTTQLGKSSKIFLVSARHHSLLHSVYTCLTAALNGFTEHLPNECIALDLRQALHS 419

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           +G ++G    E +L  IFSKFCIGK
Sbjct: 420 IGNLSGSEVTENVLGEIFSKFCIGK 444


>gi|123965453|ref|YP_001010534.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9515]
 gi|166234807|sp|A2BUG6|MNME_PROM5 RecName: Full=tRNA modification GTPase mnmE
 gi|123199819|gb|ABM71427.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus str. MIT 9515]
          Length = 461

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 157/459 (34%), Positives = 246/459 (53%), Gaps = 26/459 (5%)

Query: 4   EKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----L 56
            ++TI A+++        I++IR++G      C+ I + K  +  + S R F G     L
Sbjct: 7   TEDTIAAIASAISLGKGGIAVIRVTGEEAINSCKNIVETKSKYAWE-SHRVFHGYVKDNL 65

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-LRLANPGEFSR 115
           + + +D+ L+ V  SP SFTGED  E H HGG+ VVN +++ L    N +R+ANPGEFS+
Sbjct: 66  ENKYIDEILISVMHSPNSFTGEDVVELHCHGGVIVVNKVMDTLLSNNNKVRIANPGEFSQ 125

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NGKIDL +AES+  LI+++      ++  G+ GE+        + L    S IEA 
Sbjct: 126 RAFLNGKIDLTQAESINQLINAKNLKSAEIAFNGVKGEIKKKIDVIKNDLIEQLSEIEAR 185

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF E  D  +F+  +    I  +K  I   I   K G  I NG  I ++G +N GKSSL
Sbjct: 186 VDFEE--DFSDFNYHDFSRSIKNIKEKIEILIENTKRGASIHNGISIALIGKTNVGKSSL 243

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L+KK+ AIVT+IPGTTRD++ ++L ++   +K+ DTAGIR+TD+ +E  GI++TF  
Sbjct: 244 LNLLSKKEKAIVTNIPGTTRDMIEVNLTIKDIPIKLVDTAGIRDTDEYIENIGIEKTFEM 303

Query: 296 VENADLILLLKEIN-----SKKEI--SFPKNIDFIFIGTKSDLYSTYTEEY------DHL 342
           ++ +D I+ L  +        +EI    P+      +G K DL  +   +         L
Sbjct: 304 IQKSDYIIYLYSLEDGFNKDDEEIISKIPREKLITILGNKKDLIDSKKNDQKTFSSDIVL 363

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           +S    EG ++L++KI        +     I  ++R + +L   ++ L     +      
Sbjct: 364 MSIKNNEGEKDLVDKIVKK-CGSKEFENIDIFLNERQISNLRDCLKNLNDTDPIIANQLP 422

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D+++  +R    +L +ITG    E LL+ IFSKFCIGK
Sbjct: 423 FDLLSIEVRDGIKNLSRITGQELTEDLLNNIFSKFCIGK 461


>gi|71901963|ref|ZP_00684014.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Xylella fastidiosa Ann-1]
 gi|71728268|gb|EAO30448.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Xylella fastidiosa Ann-1]
          Length = 451

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 141/431 (32%), Positives = 223/431 (51%), Gaps = 13/431 (3%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           I IIR+SG     +   +       PR A    F  +D +++D GL I FP+P SFTGED
Sbjct: 24  IGIIRISGSQIKTIATGL-GMTTLRPRYAHYTRFLDVDDQVIDDGLAIWFPAPHSFTGED 82

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HG   ++  +L     +   R A PGEFS RAF NGK+DL++AE++AD+I +  
Sbjct: 83  VLELQGHGSPLLLRQLLTRCLDL-GARQARPGEFSERAFLNGKLDLIQAEAIADMIGAAD 141

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
               R +   + G  S        +L  +R  +EA +DF++ E +      ++   +  L
Sbjct: 142 LRSARAARRSLDGVFSRRCEALAQELVRLRIHVEATIDFAD-ESLDTLDRAQIRTSLQTL 200

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             +++  +   + G+ + +G   V++G  N GKSSL NAL   D AIVTD+PGTTRD L 
Sbjct: 201 NVELTQLLRDAEHGKRLCDGLYTVLVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLR 260

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             +   G    + DTAG+R   D +E+EG++RT  E++ ADL L++ +    +  S    
Sbjct: 261 ESVHFHGLEFVLVDTAGLRGEGDAIEREGMRRTLNELQRADLALVVLDACDPQIGSLALA 320

Query: 320 ------IDFIFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELINKIKSILSNKF-KKL 369
                    ++I  K DL +      D     +S+ TG GL+ L  +++++L  +  + +
Sbjct: 321 DALTSVPRVLWIHNKLDLLTEPPSVLDTDVIPVSAMTGAGLDTLKTRLRTLLLGETVETI 380

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLL 429
                +  RH+  L +T  ++  A+       L++ AE LRLA  +LG+I G +  ++LL
Sbjct: 381 EGEFSARLRHVQALQRTAAHVTDANAQFAYEHLELTAEELRLAYKALGEINGSMSPDELL 440

Query: 430 DIIFSKFCIGK 440
             IFS FCIGK
Sbjct: 441 GRIFSNFCIGK 451


>gi|55980900|ref|YP_144197.1| tRNA modification GTPase TrmE [Thermus thermophilus HB8]
 gi|81821865|sp|Q5SJS7|MNME_THET8 RecName: Full=tRNA modification GTPase mnmE
 gi|55772313|dbj|BAD70754.1| thiophene and furan oxidation protein [Thermus thermophilus HB8]
          Length = 432

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 141/443 (31%), Positives = 230/443 (51%), Gaps = 17/443 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDG 58
           + K+ I A++T     AI ++RLSG    ++   + + K P      R A         G
Sbjct: 2   NLKDPICAIATPPGKGAIGVVRLSGEGALEIAARVWRGKDPRRLKGGRFALGEVVDPKTG 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ +L+VF +P S+TGED  EF  HG  AV+  ++E L      R A  GEF+ RA+
Sbjct: 62  EAIDQAILLVFRAPRSYTGEDLVEFQTHGSPAVLRRVMEVLV-AEGARPAGRGEFTFRAY 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL +AE++  LI +E E+ RR ++  + G LS       ++L ++ + I+A LD+
Sbjct: 121 LNGKMDLAQAEAVLALIEAEGELARRQALRALEGALSRRIEALENRLLNLLAHIQALLDY 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E E V+   ++  +     +  ++ + ++Q K   + + G ++ ++G  NAGKSSL NA
Sbjct: 181 PE-EGVEPLEAERTI---REVLAEVEALLAQAKASRLAQKGARLALIGAPNAGKSSLLNA 236

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L   + A+V+ IPGTTRD L   L+L G  +   DTAG+RET+D VE+ G++R     E 
Sbjct: 237 LLGYERALVSPIPGTTRDYLEAPLELFGIPLVAVDTAGVRETEDPVERMGVERALGIAEE 296

Query: 299 ADLILLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
           ADL+L + + +  K    P        + TKSDL   + +     +SS TGEGL+ L   
Sbjct: 297 ADLVLYVVDRSQPKPAPPPLPWARTLKVATKSDLPPAWEDPEFLPVSSLTGEGLDRLKEA 356

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           ++  L     +    +   +R +  L +    LE A         D++   L  A+ +L 
Sbjct: 357 VREAL---LGREGGEVLLTERQVEALLRARERLEEAL----SLPEDLMGLALEEAARALA 409

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
            +TG    E+++  +F  FC+GK
Sbjct: 410 LLTGKEVAEEVVARVFQNFCVGK 432


>gi|160932434|ref|ZP_02079824.1| hypothetical protein CLOLEP_01269 [Clostridium leptum DSM 753]
 gi|156868393|gb|EDO61765.1| hypothetical protein CLOLEP_01269 [Clostridium leptum DSM 753]
          Length = 464

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 218/453 (48%), Gaps = 21/453 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGL---DGRIL 61
           TI A+ST      I +IR+SG     + + +      K   +       +G    +G  +
Sbjct: 14  TIAAISTAQGVGGIGVIRVSGRDALAIGDRVFQSSGGKKLSQMKGYTAAYGRIRSNGEDI 73

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ + +VF +P S+TGED  EF  HGG+ +   +L  +        A PGEF+RRAF NG
Sbjct: 74  DEAVALVFRAPHSYTGEDVVEFSCHGGLYLTRRVLRAVL-DGGASPAGPGEFTRRAFLNG 132

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+ L EAE++ D+I ++     R ++ G  G +        D L    + + A  D+ E 
Sbjct: 133 KMGLTEAEAVMDMIGAKGRQAARTALAGRDGAIHKAIASVKDSLVFTAAHLSAWADYPE- 191

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+      E+   +   +  +   +SQ   G+ IR G   VI G  N GKS+L N L+ 
Sbjct: 192 EDIPQVEEMELTARLKKAEAALERLLSQYDAGKAIREGLNTVIAGRPNVGKSTLMNLLSG 251

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            + +IVT++PGTTRDV+   + +    +++SDTAGIR T+D+VE+ G+ R    ++ ADL
Sbjct: 252 CERSIVTELPGTTRDVVEETVLVGDVTLRLSDTAGIRSTEDLVEQIGVNRAKDRIQTADL 311

Query: 302 ILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-------SSFTG 348
           +L + +       + +  +   + +  I +  K+DL +    +Y            +  G
Sbjct: 312 VLAVFDASQELNEDDRNLLDSLQGVPSIAVINKTDLDAKIDVKYIKNKVKQIVFLVASEG 371

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAE 407
           +GLE+L   +  +      +    + + +R      + +  + E     E    LD +  
Sbjct: 372 KGLEDLQQALAELAGTSELEPSEGLLATERQQQAAKEALACVNEGLEALELGMTLDAVTV 431

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  A  +L ++TG    E ++D +F +FC+GK
Sbjct: 432 SIEGAVQALLELTGERASEAVVDQVFHRFCVGK 464


>gi|300705596|ref|YP_003747199.1| GTPase [Ralstonia solanacearum CFBP2957]
 gi|299073260|emb|CBJ44619.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Ralstonia solanacearum CFBP2957]
          Length = 434

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 144/436 (33%), Positives = 231/436 (52%), Gaps = 29/436 (6%)

Query: 31  FQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIA 90
             V + +C +    PR+A+   F   DG  +D+G+ + FP+P S+TGED  E   HGG  
Sbjct: 2   RAVMQAVCGR-LLQPRQATYLPFLDADGHAIDRGIALWFPAPHSYTGEDVLELQGHGGPV 60

Query: 91  VVNGILEELA---KMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSM 147
           V+  +L       +   +R+A PGEF+RRAF N K+DL +AE++ADLI + TE   R + 
Sbjct: 61  VMQLLLSRCLQTGREIGVRVAEPGEFTRRAFLNDKMDLAQAEAVADLIEASTEAAARSAA 120

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI 207
             + G  S      ++++ H+R  +EA LDF E E++    + +    +  ++  +   +
Sbjct: 121 RSLDGAFSQAVHALVERVIHLRMLVEATLDFPE-EEIDFLEAADARGQLADIRARLDGVL 179

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +Q + G ++R G  +V+ G  N GKSSL NALA  ++AIVT I GTTRD +   + +EG 
Sbjct: 180 AQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGI 239

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE---------------INSKK 312
            + I DTAG+R+T+D VE+ GI+RT+  +  AD++L L +               I+++ 
Sbjct: 240 PLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLHLLDAADYRALGLSAEDAAIDARI 299

Query: 313 EISFPKNIDFIFIGTKSDLYSTYT------EEYDHLISSFTGEGLEELINKIKSILSNKF 366
               P  +  + +  K DL    T      +  +  +S+  G G+E L   +  I   + 
Sbjct: 300 AGHVPAGVPTLRVINKIDLSGAATPVRVDAQPPEVWLSARDGSGIELLRAALLEIAGWQ- 358

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVD 424
                   + +RHL  L     +L +A+   +++   LD+ AE LRLA  +L  ITG   
Sbjct: 359 GGGEGLYLARERHLSALRAAKDHLAIAADHADQRAQSLDLFAEELRLAQEALNSITGAFS 418

Query: 425 VEQLLDIIFSKFCIGK 440
            + LL +IFS+FCIGK
Sbjct: 419 SDDLLGVIFSRFCIGK 434


>gi|126643000|ref|YP_001085984.1| tRNA modification GTPase TrmE [Acinetobacter baumannii ATCC 17978]
          Length = 406

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 154/410 (37%), Positives = 235/410 (57%), Gaps = 22/410 (5%)

Query: 48  ASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107
           A  R F+  DG I+D+G+++ FP+P SFTGED  E   HGG  + N +L  L ++     
Sbjct: 2   AGFRKFYDADGSIMDEGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GAIA 60

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A  GEFS RAFENGK+DL++AE++ADLI + ++   R ++  + G  S+     ++KL +
Sbjct: 61  AKAGEFSMRAFENGKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIY 120

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R  +EA +DF E E++   +  ++L  +  ++  + +  +  + G+++R G ++VI G 
Sbjct: 121 LRLHVEAAIDFPE-EEIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGK 179

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL NALA  + AIVTDI GTTRDVL   + L G  + ++DTAG+RET DIVEKE
Sbjct: 180 PNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKE 239

Query: 288 GIKRTFLEVENADLILLLKEINSKKEI---------SFPKNIDFIFIGTKSDLYSTYTEE 338
           GI+R   E+E ADL+LL+ ++N   +             +    + IG K DL     E 
Sbjct: 240 GIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEI 299

Query: 339 YDHL------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
            D+       +S+    G++ L++ I +     F     +  +  RHL  + +T  YL  
Sbjct: 300 SDYQGFRHITVSAKQEMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAE 357

Query: 393 A--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   L   + G +++AE+LRLA  +LG+ITG    + LL  IF  FCIGK
Sbjct: 358 AREQLVVFNAG-ELVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 406


>gi|76789438|ref|YP_328524.1| tRNA modification GTPase TrmE [Chlamydia trachomatis A/HAR-13]
 gi|123606658|sp|Q3KKZ6|MNME_CHLTA RecName: Full=tRNA modification GTPase mnmE
 gi|76167968|gb|AAX50976.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Chlamydia trachomatis A/HAR-13]
          Length = 444

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 145/445 (32%), Positives = 224/445 (50%), Gaps = 13/445 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI-LDK 63
            +TI A++T     +I+I+R+SGP    + + I           +          + +D+
Sbjct: 4   NDTITAIATPPGEGSIAIVRVSGPDAISISDRIFSGNIAGYASHTAHLGTVSHNAVYIDQ 63

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L++V  +P SFTGED  EF  HGG    + I+  L      R A PGEFS+RAF NGKI
Sbjct: 64  ALVLVMRAPRSFTGEDIVEFQCHGGYFACSQIVNTLL-AEGARAALPGEFSQRAFLNGKI 122

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE- 182
           DL++AE++  LI+++     R++     G  S         +    ++IE   DF EE+ 
Sbjct: 123 DLIQAEAIQQLIAADNIDAFRIAQNQFQGHTSQAISSISSLIIEALAYIEVLADFPEEDI 182

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           + ++   K  + + L + +++   +S    G+ +  G  IV+ G  NAGKSS+ NAL +K
Sbjct: 183 ETEDSLPKHRIMEALSITDEL---LSSFDEGQRLAQGTSIVLAGLPNAGKSSILNALTQK 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDIPGTTRD+L  +  L+G  +++ D+AG+RET+++VEKEGI R    +  A+ I
Sbjct: 240 NRAIVTDIPGTTRDILEENWVLQGKNLRLIDSAGLRETENLVEKEGIARAREAMSQAEGI 299

Query: 303 LLLKEINSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDHLI---SSFTGEGLEELINK 357
           L + + +       +       I +  K D+ S    E        S+ TGEGL EL   
Sbjct: 300 LWVVDASQPLPEFPTILYQKPTILLWNKCDIVSPPQIEVPFQQISVSAKTGEGLLELKQA 359

Query: 358 IKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVS 415
           ++  L+  +  K         RH   L      L  A     +    + IA +LR A  S
Sbjct: 360 LQKWLNTTQLGKSSKIFLVSARHHSLLHSVYTCLTAALNGFTEHLPNECIALDLRQALHS 419

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           +G ++G    E +L  IFSKFCIGK
Sbjct: 420 IGNLSGSEVTENVLGEIFSKFCIGK 444


>gi|229826871|ref|ZP_04452940.1| hypothetical protein GCWU000182_02255 [Abiotrophia defectiva ATCC
           49176]
 gi|229788489|gb|EEP24603.1| hypothetical protein GCWU000182_02255 [Abiotrophia defectiva ATCC
           49176]
          Length = 455

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 140/456 (30%), Positives = 229/456 (50%), Gaps = 22/456 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL---DGRI 60
            +TI A+ST    S ISIIR+SG   F +   + K       +  +    +G    +  I
Sbjct: 2   NDTITAISTAVGNSGISIIRISGDEAFDIAGKLMKLSSTDVEKIKTHTIKYGHIYNEAGI 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+     P+++T ED  E + HGG  +   +LE   K    R A PGEF++RAF +
Sbjct: 62  VDEVLVSFMKGPKTYTREDVVEINCHGGAFITKKVLETAIKA-GARPAEPGEFTKRAFLS 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AE++ D+I ++++   + +   ++G +        D +    ++IEA LD  E
Sbjct: 121 GRIDLTQAEAVMDIIRADSDYAIKSAGRRLNGGIGDKLKPVKDSILTDMAYIEAALDDPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              +    ++E+  +++   N +++ +     G II+ G K VI+G  N GKSS  N ++
Sbjct: 181 HMSLDG-KAEEIRENVINNINALNNILENAGKGRIIKEGIKTVIVGKPNVGKSSFLNYIS 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++VAIVTDIPGTTRD L  ++ L    + I DTAGIRETD+ +E+ GI+R    + +AD
Sbjct: 240 GEEVAIVTDIPGTTRDALLQNVSLGDISLNIVDTAGIRETDNEIERMGIERAKEHLSDAD 299

Query: 301 LILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF-------- 346
           L+L++ +++       K+ ++  K+   + I  K+DL    T+E     S F        
Sbjct: 300 LVLMIIDVSKPLSTEDKELLAEIKSKKTVLILNKTDLERGLTDEEYKEFSEFNLVEISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL-NEKDCGLDI 404
              G+E L   IK +  N        I  S+ R    + +    L M     +     D 
Sbjct: 360 KRIGIERLTEIIKEMFFNGELDFNNEIYLSNLRQEGAIRRAKESLNMVLESIDSGVSEDF 419

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +L  A  ++G++TG    E L D IF  FC+GK
Sbjct: 420 YTIDLMNAYNAIGEVTGDTTSEDLADKIFKDFCMGK 455


>gi|224063199|ref|XP_002301037.1| predicted protein [Populus trichocarpa]
 gi|222842763|gb|EEE80310.1| predicted protein [Populus trichocarpa]
          Length = 483

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 137/473 (28%), Positives = 228/473 (48%), Gaps = 42/473 (8%)

Query: 7   TIFAVSTGAL--PSAISIIRLSGPSCFQVCEFICKKK-----------KPFPRKASLRYF 53
           TI A+ T     P+++ I+RLSGPS  ++   + K             KP          
Sbjct: 14  TIAAIVTSVGGPPASVGIVRLSGPSAVEIAARVFKPMRKKKKKGFCVWKPTSHVVDYGVV 73

Query: 54  FGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
               G ++D+ L +   +P S+T ED  E   HG    +  +L    +    RLA PGEF
Sbjct: 74  LDHQGNVVDEVLAVPMLAPRSYTREDVVELQCHGTEVCLRRVLRACIEA-GARLAEPGEF 132

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           + RAF NG++DL +AE++  LISS++      ++ G+ G  +SL      +   + + IE
Sbjct: 133 TLRAFLNGRLDLSQAENVGKLISSKSVAAADAALAGIQGGFASLVKSLRTQCIELLTEIE 192

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF +  ++       +++ I  +  ++ + +      +++++G +I I+G  N GKS
Sbjct: 193 ARLDFDD--EMPPLDLNLIMDKIHSMSENVENALKTANYDKLLQSGLQIAIVGRPNVGKS 250

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL NA +K + AIVT+I GTTRD++   + + G  V + DTAGIR TDD+VEK G++R+ 
Sbjct: 251 SLLNAWSKSERAIVTEIAGTTRDIVEASITVGGIPVILLDTAGIRVTDDVVEKIGVERSE 310

Query: 294 LEVENADLILLLK---EINSKKEISFPKNI-----------DFIFIGTKSDLYSTYTEEY 339
                AD+I++     +  + ++      I             I +  K D   +   E+
Sbjct: 311 AVALGADVIVMTVSALDGWTPEDTELLNRIVSKKKSVGSFTPMILVVNKIDCSPSLCSEW 370

Query: 340 D----------HLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVR 388
                          + TG+G+++L   I  I+  NK          + R    L +   
Sbjct: 371 VDRGGGSFSKHVFTCAITGQGIQDLEMAISEIVGLNKIPAGGLKWTVNHRQCEQLVRMKE 430

Query: 389 YL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L  + S  E++  LD    +LR A+++LG+I+G    E++L  IF KFCIGK
Sbjct: 431 ALVRLKSSIEEEMPLDFWTIDLRDAALALGQISGENISEEILSNIFGKFCIGK 483


>gi|332300821|ref|YP_004442742.1| tRNA modification GTPase mnmE [Porphyromonas asaccharolytica DSM
           20707]
 gi|332177884|gb|AEE13574.1| tRNA modification GTPase mnmE [Porphyromonas asaccharolytica DSM
           20707]
          Length = 470

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 148/474 (31%), Positives = 236/474 (49%), Gaps = 38/474 (8%)

Query: 1   MNHE-KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           M H+  ETI A +T      +++IR+SG    Q+ E +  K+   PR+A+      +DG+
Sbjct: 1   MIHDLSETICAPATALG-GGLAVIRISGSLAPQIAERLLGKRL-TPREAT-TAGLRIDGQ 57

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D  +   F +P S+TGE+  E   H    +V  ILE +A+    R+A+PGEF+RRA  
Sbjct: 58  LIDLVVATYFAAPHSYTGEEVVELSCHASPYIVRSILEWIAQQEGCRMADPGEFTRRALA 117

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           +GK+DL EAE++ADLI++ T  Q +++ME  +G LS L  +    L      +E +LDFS
Sbjct: 118 HGKLDLAEAEAVADLIAATTATQHKMAMEQHTGRLSHLLNELRATLLRFAGLLELELDFS 177

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV       ++  +  +++ +         G+ ++ G    I+G  N GKSSL NAL
Sbjct: 178 E-EDVAFADRSTLVETLATIQHQLRLLTQSFSTGQELQQGIPTAIIGAPNVGKSSLLNAL 236

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            + + AIV+DIPGTTRD +   L + G L ++ DTAG+R+T D+VE+ GI+R++ ++ +A
Sbjct: 237 LQHERAIVSDIPGTTRDTVEGRLTIRGTLFRLIDTAGLRQTTDLVEQLGIERSYQQISSA 296

Query: 300 DLILLLKEINSKKEISFPKN-----------IDFIFIGTKSDLYST-------------- 334
            LIL +                            + +  K DL +               
Sbjct: 297 RLILWVIAPPLPTWDELEAQLSEILRLTSPESTLMLLLNKRDLLTEREVTDWLSNCSSLL 356

Query: 335 -YTEEYDHL-----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             T    H      IS+   +G+E L   + +            +  + RH   L++  R
Sbjct: 357 QRTNGKPHTTSPLAISARAAQGIETLEELMVTSTQTLHSDEETVMLYNLRHYEALTKASR 416

Query: 389 YLEMASLNEKD-CGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
            LE+ S    +    D+I   LR A   +G +TG  +  +++L  IFS FCIGK
Sbjct: 417 ALELVSEGLHNGLTSDLITPYLREAIEEIGLVTGASITSDEVLGFIFSHFCIGK 470


>gi|283768664|ref|ZP_06341576.1| tRNA modification GTPase TrmE [Bulleidia extructa W1219]
 gi|283105056|gb|EFC06428.1| tRNA modification GTPase TrmE [Bulleidia extructa W1219]
          Length = 441

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 141/448 (31%), Positives = 249/448 (55%), Gaps = 15/448 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGR 59
           M+H  +TI A+ST     A+SIIR+SGP  F++ + +C K  +       +R        
Sbjct: 1   MSH--DTIAAISTADAMGAVSIIRISGPDTFEIVKKLCHKDVRNMEGYRMVRSEIYDQQE 58

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D  L+ VF +P S+TGED  E + HGG+ + + IL+ L      RLA  GEF++RAF 
Sbjct: 59  VVDDSLISVFHAPYSYTGEDVVELNCHGGVYLTHKILQ-LVLGLGARLAKRGEFTQRAFL 117

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N K+DL +AE++ DLI +E E+  + ++  + G +  +     ++L  + + IE ++D+ 
Sbjct: 118 NEKMDLSQAEAIQDLIVAEDEINTKAAIHTLKGSILRVLRPLEEELIQMIAHIEVNIDYP 177

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +DV+     ++L      +  +   + + +  ++++ G + VI+G  N GKSSL NAL
Sbjct: 178 EYDDVEMLVESDILPKAKAWRQQLEKLVLESEKAQVVKGGVQTVIVGRPNVGKSSLLNAL 237

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            ++D AIVTDI GTTRD++  ++ +  + + + DTAGIR+++D +E+ GI+++   +E A
Sbjct: 238 LEEDKAIVTDIAGTTRDIVEGNIRIGSFSLHLIDTAGIRDSNDRIEQMGIEKSKKMIEKA 297

Query: 300 DLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
            LILL+ +      I  ++ +   K+   I I  K DL S Y+      IS+ TG+ +E 
Sbjct: 298 QLILLVMDGSQELTIEDQELLEQTKDKTRIIIYNKKDLGSKYSG---VQISASTGQ-IEA 353

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLA 412
           L  K++++   +         ++ R +      +  ++ A  + E    LD++  +L+ +
Sbjct: 354 LKEKLEALFQQEVLAASGDTLANDRQIGLAKAALGAMDQAIASLEAGMELDLVTLDLQES 413

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              L +++G    E LLD IFS+FC+GK
Sbjct: 414 WNCLKEMSGGRSREGLLDEIFSRFCLGK 441


>gi|221640727|ref|YP_002526989.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides KD131]
 gi|221161508|gb|ACM02488.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides KD131]
          Length = 428

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 162/437 (37%), Positives = 246/437 (56%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+++    + ++++RLSGP   +  +       P  R A+LR     D  +LD+ L
Sbjct: 2   DTIYALASARGKAGVAVLRLSGPRSHEAVQA-FGVPLPPLRHAALRRLTWND-EVLDEAL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +++F +  SFTGE SAE H+HG  A V+ +L  L+ +P LR A  GEF+RRA ENG++DL
Sbjct: 60  VLLFGAGASFTGETSAELHLHGSPAAVSSVLRVLSGLPGLRAAEAGEFTRRALENGRLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QRR +M   SG +     +W   L    + +EA +DF++ EDV 
Sbjct: 120 AQVEGLADLIDAETEAQRRQAMRVFSGAIGERAERWRADLIRAAALLEATIDFAD-EDVP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EVL  I  L  D+   +   ++ E IR+G+++ I+G  NAGKS+L NALA+++ A
Sbjct: 179 VDVTPEVLTLIDGLLADLRREVDGSRIAERIRDGFEVAIVGAPNAGKSTLLNALARREAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++I GTTRDV+ + +DL+G  V   DTAG+R+T D+VE  GI+R     + ADL + L
Sbjct: 239 ITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRDTSDLVESLGIERAVTRAKAADLRVFL 298

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            + +S          D + +  K+DL           +S  TGEG+ EL+  I   L  +
Sbjct: 299 LD-DSGPLHGITVQADDLVVQGKADLRP----GQGLRLSGRTGEGVPELVAAIGERLLGR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
                    + +RH   + + +  +E   A L       ++ A++LR A  SL  + G V
Sbjct: 354 IAGAGS--LTRERHRLAIERAIGAMESVRAELLRGQQHTELAADDLRRAIRSLDSLVGRV 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LL  IF+ FCIGK
Sbjct: 412 DVESLLGEIFASFCIGK 428


>gi|195953055|ref|YP_002121345.1| tRNA modification GTPase TrmE [Hydrogenobaculum sp. Y04AAS1]
 gi|195932667|gb|ACG57367.1| tRNA modification GTPase TrmE [Hydrogenobaculum sp. Y04AAS1]
          Length = 438

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 148/447 (33%), Positives = 234/447 (52%), Gaps = 16/447 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN+   TI A +T  L SAISI+RLSG +C  +       + P PR A    F+ ++ + 
Sbjct: 1   MNN---TIVAPATPVLKSAISILRLSGFNCIDIANRFLHIENPKPRYAYRTSFY-VNNKE 56

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD  + I + +P S+TGED  E   HG   ++   +E L        A+PGEF++RAF N
Sbjct: 57  LDDVIAIYYKAPRSYTGEDMLEIFFHGNPIIIEKAIETLV-DYGCSFASPGEFTKRAFLN 115

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+ L EA S+  LIS+ TE     ++  + G+ SS       +   I + IEAD++F  
Sbjct: 116 GKMTLDEASSVELLISANTEKALENALNMLKGKFSSFIEGLRKEFIRIIANIEADIEFG- 174

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+Q     E+  +I  L   +     + K    + +G K+ I+G  N GKSSLFN L 
Sbjct: 175 YEDIQPLDVNEIKKEINDLICRLEEFHKKLKEQSYLYDGIKVAIVGKPNVGKSSLFNTLL 234

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +K  AIV+DIPGTTRD +   L++ G+ VK+ DTAGIR+TD+ +E+EGI      ++ A 
Sbjct: 235 QKRRAIVSDIPGTTRDYIEDRLEINGFPVKLVDTAGIRKTDNPIEREGINIAIEHMKEAH 294

Query: 301 LILLLKEINSKKE------ISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISSFTGEGLEE 353
           ++L + + +   E          KN++ +    KSDL  ++ T ++    +       +E
Sbjct: 295 VVLFVVDGSKDLEEEDYFIYDIVKNLNTLVALNKSDLGINSKTLDFFKNNAIIISIRNQE 354

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
            +  +K+ + +        I   KR+ + +++ +  L+ A L  K    +++   +R A 
Sbjct: 355 NVEYLKNKVLHMLDLADDGIYVSKRNKFLVAKALESLKEAVLQNKT---EVMMLYIREAL 411

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L +I G +  E +LD IFS FCIGK
Sbjct: 412 DYLEEILGLIKDEDVLDEIFSTFCIGK 438


>gi|238926591|ref|ZP_04658351.1| tRNA modification GTPase TrmE [Selenomonas flueggei ATCC 43531]
 gi|238885537|gb|EEQ49175.1| tRNA modification GTPase TrmE [Selenomonas flueggei ATCC 43531]
          Length = 466

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 139/460 (30%), Positives = 230/460 (50%), Gaps = 25/460 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP------FPRKASLRYFFGLD 57
            ++TI  ++T      I IIR+SG     V   + +           P  A   +    D
Sbjct: 9   TEDTISQIATPHGAGGIGIIRVSGEDALGVARRVFRPAAGGTLGDMAPYTARYGHIVAAD 68

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ++D+ +L+   +P S+TGED+AE   HGG  V+  +L    +    R A  GEF++RA
Sbjct: 69  GTVIDECILLYMRAPHSYTGEDTAELQCHGGAVVLREVLLRTWEA-GARPAEAGEFTKRA 127

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F +G++DL  AES+ +LI++++      + E ++G  S        ++    + IEA +D
Sbjct: 128 FLHGRLDLARAESVMELIAAKSTRAAHAARERLAGAFSHAVTDIRTQILGAVAHIEAGID 187

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E +D+   S++ +  +I      +   ++    G I+R+G K VI+G  N GKSSL N
Sbjct: 188 FPE-DDIPAASAEHLAAEIDAASAAVRRLLAGADTGRILRDGVKTVIVGRPNVGKSSLLN 246

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL   + AIVTD+PGTTRD++  ++ + G  +++ DTAG+R  +D VE+ G+ RT   + 
Sbjct: 247 ALLGMERAIVTDVPGTTRDIIEEEISVAGIPLRLLDTAGLRAAEDAVEQIGVARTEQHLT 306

Query: 298 NADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEE-------YDHL 342
           +A+LIL + + +                   D I + +K D  S  + E           
Sbjct: 307 DAELILAVFDASEPLTAEDHALLARLSAAAADIIILCSKEDRPSVLSAEDFAAVAAPVLR 366

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQ-TVRYLEMASLNEKDC 400
           IS+  G GL+ L  +I + +  +   L   ++P+ +R +  L +        A     D 
Sbjct: 367 ISAQEGTGLDALREEIAAHIVQREGDLSDGALPNKEREIEALRRAEAHLAAAAETLAADL 426

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           G D ++ +LR A  +LG+I G      L+D IFS+FCIGK
Sbjct: 427 GTDFVSIDLRAAYDALGEILGETVDTDLIDRIFSEFCIGK 466


>gi|152993155|ref|YP_001358876.1| tRNA modification GTPase TrmE [Sulfurovum sp. NBC37-1]
 gi|205829171|sp|A6QAL0|MNME_SULNB RecName: Full=tRNA modification GTPase mnmE
 gi|151425016|dbj|BAF72519.1| tRNA modification GTPase TrmE [Sulfurovum sp. NBC37-1]
          Length = 450

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 238/448 (53%), Gaps = 15/448 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           + TI A++T    S+ISIIR+SG +   + + I   ++  PR A L   +     ++D+ 
Sbjct: 6   QNTIAAIATAYGVSSISIIRVSGNAALDIAKKISHLEEVKPRHAHLTSLYNSQNDLIDQA 65

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGE+  EF  HGG+ V   IL+ +     +RLA PGEFS+RAF NGKID
Sbjct: 66  IMIYFKAPFSFTGEEIVEFQCHGGMIVAQEILDTIL-SYGIRLAEPGEFSKRAFFNGKID 124

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE+++ LI +++    ++  + M GEL     +  D L    ++ E  +D++E ED+
Sbjct: 125 LTEAEAISKLIEAKSVDAAKILAKQMKGELKYFVDESRDALLRSLAYSEVMIDYAE-EDI 183

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +   + ++  +  L   I   +        +  G+K+ I+G  N GKSSL NAL   D 
Sbjct: 184 PDDIMRSIVTQLDGLSEQIMKIVDASYRRRGLIEGFKVAIIGKPNVGKSSLLNALLSYDR 243

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+DI GTTRD +   + +  +++++ DTAGIRE++D +EK GI+R+   VE+AD+I+ 
Sbjct: 244 AIVSDIAGTTRDTIEEQVRIGSHIIRLVDTAGIRESEDTIEKIGIERSLSSVEDADIIIA 303

Query: 305 LKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF---TGEGLE 352
           L + + + +         +   ++   I    KSDL      +  +          +G  
Sbjct: 304 LFDGSREFDSEDEKILAIVDALQDKHIIVAINKSDLEMKLDGDRINSYDPIEVSAKKGFV 363

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
           +L  +++++L +   +    +    R +  +++    +  A     +  L+  + +L+ A
Sbjct: 364 KLTRQMEALL-DSIGEGEELMLISARQIEAVNRAKNAIAEAKEPLMNGELEFFSYHLQEA 422

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++  I+   D E++LD +F +FC+GK
Sbjct: 423 VKAISSISKPYDSEEILDKMFGEFCLGK 450


>gi|293364063|ref|ZP_06610799.1| tRNA modification GTPase TrmE [Mycoplasma alligatoris A21JP2]
 gi|292552553|gb|EFF41327.1| tRNA modification GTPase TrmE [Mycoplasma alligatoris A21JP2]
          Length = 453

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 151/454 (33%), Positives = 247/454 (54%), Gaps = 20/454 (4%)

Query: 5   KETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
            +TI A+S+G+ +   ISIIR+SGP    + + I K K    +  +       +  +LD+
Sbjct: 2   FDTIAAISSGSKINQPISIIRISGPDSVNIMKKIFKGKIGEDKTITFGNIVNNNQEVLDE 61

Query: 64  GLLIVFPS--------PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            L++ F           +++ GE+  E + HGGI V N ILE L      RLA PGEF+R
Sbjct: 62  VLVMWFIGVKKGLEIEYKNYVGEELVEINCHGGIVVTNSILE-LILSSGARLALPGEFTR 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NGK+DL++AE++ DLI ++++ Q  +S+   +G+ S L  +++DKL ++    E +
Sbjct: 121 RAFLNGKMDLVKAEAIHDLIMAKSQKQAHMSVNKFTGKTSDLLSKFLDKLNYLIGLCEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+    + +L  I  L  +IS  +   K  + I  G K+ ILG  N GKSSL
Sbjct: 181 IDYPEYDDVEQLDQEIMLKSIENLATEISEVLEISKRSQKIFEGIKVAILGKPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  ++ AIVTDI GTTRD++     L+G L  + DTAG+R++D+++E+ GIK++  +
Sbjct: 241 LNALVSENKAIVTDIAGTTRDLIETSYQLDGILFTLVDTAGLRKSDELIEQIGIKKSLEQ 300

Query: 296 VENADLILLLKE-INSKKEISF-------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
           ++ ADLIL + + +N++ E           +N  +I I  K DL      + D +++S  
Sbjct: 301 IKKADLILHVIDPLNNEDEFDLKIEQESKKENKTYIKIINKKDLIIGEKVKSDLVLTSAL 360

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIA 406
              + +L  +I S  SN        I ++ R +  + +    L  A  +       D+I 
Sbjct: 361 NNDIIDLEKEIISKYSNINLDDER-ILNNTRQISLIEEAKNNLNNAIKSLNLGLTFDVII 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++  A   + +I G V+ E LLD +F  FC+GK
Sbjct: 420 VDIYNAWEKISEIKGNVNKEDLLDSMFKNFCLGK 453


>gi|294675621|ref|YP_003576236.1| tRNA modification GTPase TrmE [Rhodobacter capsulatus SB 1003]
 gi|294474441|gb|ADE83829.1| tRNA modification GTPase TrmE [Rhodobacter capsulatus SB 1003]
          Length = 427

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 163/438 (37%), Positives = 253/438 (57%), Gaps = 15/438 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A ++G   + +++IRLSGP  ++    +C +  P PR+A++R    +    LD+ L
Sbjct: 2   DTIYAQASGRGKAGVAVIRLSGPRAWEAVAALCGR-LPAPRQAAVRLLR-IGADALDEAL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F +  SFTGE+SAE H+HG +A V  +L+ L  +  LRLA PGEF+RRA E+G++DL
Sbjct: 60  VLCFEAGRSFTGEESAELHLHGALATVAAVLKALGSLGFLRLAEPGEFTRRAMESGRLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ ++  +SG +  +   W  KL    + +EA +DF++ ED+ 
Sbjct: 120 SQVEGLADLIEAETEAQRKQALAVLSGSVGRMVETWRSKLIRAAALMEACIDFAD-EDLP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + E    +  +    S+ I +  + E +R G+++ I+G  NAGKS+L NALA ++ A
Sbjct: 179 VDVTPEAFALLSEVAAQFSAEIGRISVTERVREGFEVAIVGRPNAGKSTLLNALAGREAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +++ GTTRDV+ + +DL G  V + DTAG+R+T+D VE  G+ R     + ADL + L
Sbjct: 239 ITSEVAGTTRDVIEVRMDLSGLAVTLLDTAGLRDTEDQVEAIGVARAIERAKRADLRVFL 298

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            + +    +  P   D   +  K+DL  +     D  +S  TGEG++ L+  I   LS +
Sbjct: 299 LD-DGDIPLLQPIGDDL-VVQGKADLGGSG----DLRVSGKTGEGVDALVAAITERLSAR 352

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDIIAENLRLASVSLGKITGC 422
                  + + +RH   L +    LE A L E   G   LD+ AE+ R    +L  + G 
Sbjct: 353 AA--GAGVMTRERHRDCLGRASGALESA-LEELGHGLERLDLAAEHCRTGVRALESLLGR 409

Query: 423 VDVEQLLDIIFSKFCIGK 440
           VDVE LLD IFS FCIGK
Sbjct: 410 VDVENLLDEIFSSFCIGK 427


>gi|46577356|sp|Q7MVZ2|MNME_PORGI RecName: Full=tRNA modification GTPase mnmE
          Length = 474

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 150/472 (31%), Positives = 241/472 (51%), Gaps = 36/472 (7%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKP-----FPRKASLRYFF 54
           +  K+TI AV+T      I++IR+SG   F++    F+ + K        PR A      
Sbjct: 6   SFNKDTICAVATAPGVGGIAVIRVSGADAFRLVSPLFLYRGKAIDLSGAKPRTALYGEIM 65

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             D  ++D+ +L  F  P SFT E + E   HG I +   ILE L      RLA PGEF+
Sbjct: 66  EAD-ELIDEVILTCFHGPHSFTAEHTVEIACHGSIYIRRRILEALI-NQGCRLAQPGEFT 123

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRA+ NG++DL  AE++AD+I+SE++ Q +++M+ + G  S       ++L  +   +E 
Sbjct: 124 RRAYLNGRMDLSSAEAVADIIASESKAQHQMAMKQLRGGYSEELNALREELLRLTGLMEL 183

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDF E EDV+     E+L     ++  +   I   +LG  ++ G  + I+G +N GKS+
Sbjct: 184 ELDFPE-EDVEFADRTELLALCDQIELKLKKLIDSYRLGNAVKRGIPVAIVGTTNVGKST 242

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L  ++ AIV+DI GTTRD +   + + GYL +  DTAG+RET+D +E  GI+R+  
Sbjct: 243 LLNTLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTAGLRETEDTIESLGIERSRS 302

Query: 295 EVENADLILLLKE---INSKKEISFPKNID-------FIFIGTKSDLYSTY--------- 335
           +++ AD+IL + +   I+   ++ + K+I         I +  KS+  +           
Sbjct: 303 KIKEADIILAVVDGTRISEANQLDYIKSIWDEREERTLILLVNKSESLAEADRIGLSETL 362

Query: 336 -----TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                T      IS+  G G++EL  ++  I+          I S+ RH   L +    L
Sbjct: 363 QTKLSTPTKPIFISAREGRGIDELKGELTQIMETSGANEADLIVSNARHHQLLREAFDAL 422

Query: 391 EMASLN-EKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440
               L  +     D++  +LR A  S+G+ITG  +  +  L  IF+ FCIGK
Sbjct: 423 RRMRLGFDMGLSTDLLTLDLRHAITSIGEITGREITSDDTLHYIFAHFCIGK 474


>gi|149925382|ref|ZP_01913646.1| tRNA modification GTPase TrmE [Limnobacter sp. MED105]
 gi|149825499|gb|EDM84707.1| tRNA modification GTPase TrmE [Limnobacter sp. MED105]
          Length = 459

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 152/456 (33%), Positives = 244/456 (53%), Gaps = 19/456 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCF--QVCEFICKKKKPFPRKASLRYFFGLDGR 59
               + I A++T      + ++R S PS    Q        K P PR A+L     +D  
Sbjct: 6   PQHGDPIVAIATAPGKGGVGVVRFSFPSSSSFQAFCAAFCGKLPKPRMATLLTLRDVDQH 65

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-----LRLANPGEFS 114
            +D+G+ ++F +P SFTGE   EF  HGG AV+ G++     +       LR A  GEF+
Sbjct: 66  AIDEGIALLFNAPASFTGEHVLEFQGHGGQAVLQGVVAHALAVARQLNIPLRHAMAGEFT 125

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF N K+DL +AE++ADLI + +    + +   +SG  S    +  D++ H+R  +EA
Sbjct: 126 QRAFLNDKLDLAQAEAVADLIDAGSMATAKAAAASLSGVFSRQVNELADRIVHLRLLLEA 185

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LDF E E+++     +    +  + N     ++  + G   R+G +IV++G  N GKSS
Sbjct: 186 TLDFPE-EEIEFLEKADAKGQLAGILNAHGQLLNAAQEGVKFRDGLQIVLVGEPNVGKSS 244

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NALA +++AIV+ I GTTRD +  +L++ G  + + DTAG+RET D VE+ GI+RT  
Sbjct: 245 LLNALAGEEIAIVSAIAGTTRDRIKQELNIRGIPLVLVDTAGLRETVDEVERIGIERTRK 304

Query: 295 EVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTE--EYDHLISSF 346
            V+ ADL+L+LK+          + +  P ++  + +  K DL     +  +    +S+ 
Sbjct: 305 SVQEADLLLILKDATQGPHDALHQHLELPVHLPTLTVLNKVDLLPEAPQLLQDVLPVSAK 364

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDI 404
            G+GLE+L + I + +            + +RH+  L    ++L  A    +     LD+
Sbjct: 365 NGQGLEQLKDAILAKV-GIAHTPDHGFMARQRHVDALLVCGQHLVAAHEFAQQDDRILDL 423

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            AE LRLA  +LG+ITG +  + LL +IFS+FCIGK
Sbjct: 424 FAEELRLAHDALGEITGRMLPDDLLGLIFSRFCIGK 459


>gi|28952039|ref|NP_239858.2| tRNA modification GTPase TrmE [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681404|ref|YP_002467789.1| tRNA modification GTPase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219681960|ref|YP_002468344.1| tRNA modification GTPase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471078|ref|ZP_05635077.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621693|gb|ACL29849.1| tRNA modification GTPase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624247|gb|ACL30402.1| tRNA modification GTPase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086343|gb|ADP66424.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087508|gb|ADP67587.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 453

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 162/454 (35%), Positives = 235/454 (51%), Gaps = 22/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            ETI A  T    SA+ I+R+SG     V   I   K P  R A+   F   +  ILDKG
Sbjct: 4   NETIVAQVTCPGKSAVGILRISGFQTKIVAIKILG-KIPLARFATYSNFLDENNEILDKG 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P S TGED  E   HG   +++ ++  +  + N+R+A PGEFS RAF NGK+D
Sbjct: 63  ISLWFPAPHSLTGEDVLELQGHGSPLIMDLLIRRILSINNIRMAKPGEFSERAFLNGKMD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++AES+ DLI+SETE+  R S+  + G+ S    + ++ +   R  IE+++DFSEEE  
Sbjct: 123 LIQAESIDDLINSETELSARASLNSLQGKFSFFIKELMNLIIEFRINIESNIDFSEEEIN 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            N      +     L +      +    G ++R G KIVI G  N+GKSSL N L+  D 
Sbjct: 183 INMQDIINI-KFRELHDKFLKLKATVLKGSLLREGKKIVIAGLPNSGKSSLLNILSYSDR 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRD+L  D+ + G   ++ DTAG+R+TDD VE+ GI R +  +  +D +L 
Sbjct: 242 AIVTDIPGTTRDLLYEDISINGVRCELIDTAGLRDTDDKVERIGIMRAWEMIRKSDHVLF 301

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY--TEEYD----HLISSFT 347
           + +    K                      F+  K+DL       +E D      IS+ T
Sbjct: 302 VIDKTLSKSKQKKICDDFMKNILNNKTQVTFVLNKNDLIKDEFGIKEIDGTAFISISART 361

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGLDIIA 406
           GEG+  L   I  I   K         + +RH+  L      +L   +   +   ++++A
Sbjct: 362 GEGVNILREHIIKI--EKNINNESVFIARRRHIKQLDLAYDEFLTAENTWRESENIELLA 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+L + S  LG+I G    E LL+ IFS FCIGK
Sbjct: 420 ESLSIISKFLGEIIGQCTSEDLLNHIFSSFCIGK 453


>gi|11135197|sp|P57132|MNME_BUCAI RecName: Full=tRNA modification GTPase mnmE
 gi|25319358|pir||H84931 thiophene and furan oxidation protein thdF [imported] - Buchnera
           sp. (strain APS)
 gi|10038709|dbj|BAB12744.1| thiophene and furan oxidation protein thdF [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
          Length = 452

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 162/454 (35%), Positives = 235/454 (51%), Gaps = 22/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            ETI A  T    SA+ I+R+SG     V   I   K P  R A+   F   +  ILDKG
Sbjct: 3   NETIVAQVTCPGKSAVGILRISGFQTKIVAIKILG-KIPLARFATYSNFLDENNEILDKG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P S TGED  E   HG   +++ ++  +  + N+R+A PGEFS RAF NGK+D
Sbjct: 62  ISLWFPAPHSLTGEDVLELQGHGSPLIMDLLIRRILSINNIRMAKPGEFSERAFLNGKMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++AES+ DLI+SETE+  R S+  + G+ S    + ++ +   R  IE+++DFSEEE  
Sbjct: 122 LIQAESIDDLINSETELSARASLNSLQGKFSFFIKELMNLIIEFRINIESNIDFSEEEIN 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            N      +     L +      +    G ++R G KIVI G  N+GKSSL N L+  D 
Sbjct: 182 INMQDIINI-KFRELHDKFLKLKATVLKGSLLREGKKIVIAGLPNSGKSSLLNILSYSDR 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRD+L  D+ + G   ++ DTAG+R+TDD VE+ GI R +  +  +D +L 
Sbjct: 241 AIVTDIPGTTRDLLYEDISINGVRCELIDTAGLRDTDDKVERIGIMRAWEMIRKSDHVLF 300

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY--TEEYD----HLISSFT 347
           + +    K                      F+  K+DL       +E D      IS+ T
Sbjct: 301 VIDKTLSKSKQKKICDDFMKNILNNKTQVTFVLNKNDLIKDEFGIKEIDGTAFISISART 360

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGLDIIA 406
           GEG+  L   I  I   K         + +RH+  L      +L   +   +   ++++A
Sbjct: 361 GEGVNILREHIIKI--EKNINNESVFIARRRHIKQLDLAYDEFLTAENTWRESENIELLA 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+L + S  LG+I G    E LL+ IFS FCIGK
Sbjct: 419 ESLSIISKFLGEIIGQCTSEDLLNHIFSSFCIGK 452


>gi|221126301|ref|XP_002165330.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 498

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 155/432 (35%), Positives = 226/432 (52%), Gaps = 33/432 (7%)

Query: 40  KKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL 99
            K   PR+A+   F    G+ +D GL + FP P SFTGED  E   HGG  V+  ++   
Sbjct: 69  GKALRPREATYLPFPDEKGQPIDHGLALFFPGPHSFTGEDVLELQAHGGPVVLQLLVARC 128

Query: 100 A--------------KMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRL 145
                           +P LR+A  GEF++RAF N K+DL +AE++ADLI + TE   R 
Sbjct: 129 LALANSVQTEGVSSVLLPGLRIAEAGEFTQRAFLNNKLDLAQAEAIADLIDASTEAAARS 188

Query: 146 SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS 205
           + + +SG  S   G   D L H+R  +EA LDF E E++      + +  +  L+  +  
Sbjct: 189 ASQSLSGAFSKEIGILRDALIHLRMLVEATLDFPE-EEIDFLQKADAVGQLQRLQQALQQ 247

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            +++   G ++R G K+VI G  NAGKSSL NALA  ++AIVT I GTTRD +   + +E
Sbjct: 248 VLAKATQGALLREGLKVVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQETIQIE 307

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS---------- 315
           G  + I DTAG+R +DD VEK GI+R +  +E AD +L L ++     I           
Sbjct: 308 GVPLHIIDTAGLRASDDAVEKIGIERAWQAIEAADAVLFLHDLTRSSAIEYIAADADIAG 367

Query: 316 -----FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                 P +I  I +  KSD  +  T      +S+ TG GL+ L   + +    +  +  
Sbjct: 368 AIAEKLPASIPVIHVWNKSDAATPETGLEGIFLSAKTGVGLDALRQNLLTAAGWQPAQ-S 426

Query: 371 FSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428
            +  + +RH+  L    ++L+MAS  L      LD++AE LRL   +L  ITG    + L
Sbjct: 427 GAFMARQRHVQALHLVGQHLDMASELLASGSAALDLLAEELRLGQNALNSITGEFGADDL 486

Query: 429 LDIIFSKFCIGK 440
           L +IFSKFCIGK
Sbjct: 487 LGVIFSKFCIGK 498


>gi|311086919|gb|ADP66999.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 453

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 162/454 (35%), Positives = 235/454 (51%), Gaps = 22/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            ETI A  T    SA+ I+R+SG     V   I   K P  R A+   F   +  ILDKG
Sbjct: 4   NETIVAQVTCPGKSAVGILRISGFQTKIVAIKILG-KIPLARFATYSNFLDENNEILDKG 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P S TGED  E   HG   +++ ++  +  + N+R+A PGEFS RAF NGK+D
Sbjct: 63  ISLWFPAPHSLTGEDVLELQGHGSPLIMDLLIRRILSINNIRMAKPGEFSERAFLNGKMD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++AES+ DLI+SETE+  R S+  + G+ S    + ++ +   R  IE+++DFSEEE  
Sbjct: 123 LIQAESIDDLINSETELSARASLNSLQGKFSFFIKELMNLIIEFRINIESNIDFSEEEIN 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            N      +     L +      +    G ++R G KIVI G  N+GKSSL N L+  D 
Sbjct: 183 INMQDIINI-KSRELHDKFLKLKATVLKGSLLREGKKIVIAGLPNSGKSSLLNILSYSDR 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRD+L  D+ + G   ++ DTAG+R+TDD VE+ GI R +  +  +D +L 
Sbjct: 242 AIVTDIPGTTRDLLYEDISINGVRCELIDTAGLRDTDDKVERIGIMRAWEMIRKSDHVLF 301

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY--TEEYD----HLISSFT 347
           + +    K                      F+  K+DL       +E D      IS+ T
Sbjct: 302 VIDKTLSKSKQKKICDDFMKNILNNKTQVTFVLNKNDLIKDEFGIKEIDGTAFISISART 361

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGLDIIA 406
           GEG+  L   I  I   K         + +RH+  L      +L   +   +   ++++A
Sbjct: 362 GEGVNILREHIIKI--EKNINNESVFIARRRHIKQLDLAYDEFLTAENTWRESENIELLA 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+L + S  LG+I G    E LL+ IFS FCIGK
Sbjct: 420 ESLSIISKFLGEIIGQCTSEDLLNHIFSSFCIGK 453


>gi|7994696|sp|O51830|MNME_BUCMP RecName: Full=tRNA modification GTPase mnmE
 gi|2754806|gb|AAC04235.1| ThdF [Buchnera aphidicola (Myzus persicae)]
          Length = 453

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 159/453 (35%), Positives = 242/453 (53%), Gaps = 22/453 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI A  T    SA+SI+R+SG     V + +     P  R A+   F G +  +LD+G+
Sbjct: 5   ETIVAPVTSPGKSAVSILRISGSQTKIVAKKVLGS-IPKARFATYSKFLGKNSVVLDQGI 63

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            + FP+P SFTGED  E   HG   +++ +++ +  + N+R+A PGEFS RAF NGKIDL
Sbjct: 64  SLWFPAPFSFTGEDVLELQGHGSPLIMDLLIKRITSIENVRMAKPGEFSERAFLNGKIDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           ++AE++ DLI+SETE   R S+  + G+ SS   Q I  +   R+ IE+ +DFSE E++ 
Sbjct: 124 IQAEAIDDLINSETESSIRASLHSLQGDFSSHIKQLISTVIEFRTNIESSIDFSE-EEID 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                 +   +  L+            G +++ G KIVI G  NAGKSSL NAL+  + A
Sbjct: 183 IDLKSLIYIKLKELEEKFIKTKKVISEGSLLKEGKKIVIAGPPNAGKSSLLNALSHSNRA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT IPGTTRD+L  ++ + G   ++ DTAG+R+T + +E+ GI R +  ++ AD +L +
Sbjct: 243 IVTKIPGTTRDLLYENISINGISCQLIDTAGLRDTKNEIERIGIFRAWEVIKKADHVLFV 302

Query: 306 KEINSKKEISFP-----------KNIDFIFIGTKSDLY------STYTEEYDHLISSFTG 348
            +  +K+                 NI   FI  K+DL                 IS+ TG
Sbjct: 303 IDKTTKQSEQKKICNEFIQNISVNNIQITFILNKNDLVQDKFNTEKIESLLFINISARTG 362

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGLDIIAE 407
           +G+++L   I  I  N+ K       + +RH+  ++     +L           ++++AE
Sbjct: 363 QGIDKLRKHIVKIAKNENK--EGVFIARRRHINQINLAYNEFLMAKKKWIISKNIELLAE 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LRL +  LG+ITG      LL  IFS FCIGK
Sbjct: 421 SLRLINRFLGEITGRFTSNDLLKRIFSSFCIGK 453


>gi|311085766|gb|ADP65848.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 453

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 162/454 (35%), Positives = 235/454 (51%), Gaps = 22/454 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            ETI A  T    SA+ I+R+SG     V   I   K P  R A+   F   +  ILDKG
Sbjct: 4   NETIVAQVTCPGKSAVGILRISGFQTKIVAIKILG-KIPLARFATYSNFLDENNEILDKG 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + FP+P S TGED  E   HG   +++ ++  +  + N+R+A PGEFS RAF NGK+D
Sbjct: 63  ISLWFPAPHSLTGEDVLELQGHGSPLIMDLLIRRILSINNIRMAKPGEFSERAFLNGKMD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++AES+ DLI+SETE+  R S+  + G+ S    + ++ +   R  IE+++DFSEEE  
Sbjct: 123 LIQAESIDDLINSETELSARASLNSLQGKFSFFIKELMNLIIEFRINIESNIDFSEEEIN 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            N      +     L +      +    G ++R G KIVI G  N+GKSSL N L+  D 
Sbjct: 183 INMQDIINI-KFRELHDKFLKLKATVLKGSLLREGKKIVIAGLPNSGKSSLLNILSYSDR 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRD+L  D+ + G   ++ DTAG+R+TDD VE+ GI R +  +  +D +L 
Sbjct: 242 AIVTDIPGTTRDLLYEDISINGVRCELIDTAGLRDTDDKVERIGIMRAWEMIRKSDHVLF 301

Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY--TEEYD----HLISSFT 347
           + +    K                      F+  K+DL       +E D      IS+ T
Sbjct: 302 VIDKTLSKSKQKKICDDFMRNILNNKTQVTFVLNKNDLIKDEFGIKEIDGTAFISISART 361

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGLDIIA 406
           GEG+  L   I  I   K         + +RH+  L      +L   +   +   ++++A
Sbjct: 362 GEGVNILREHIIKI--EKNINNESVFIARRRHIKQLDLAYDEFLTAENTWRESENIELLA 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+L + S  LG+I G    E LL+ IFS FCIGK
Sbjct: 420 ESLSIISKFLGEIIGQCTSEDLLNHIFSSFCIGK 453


>gi|182412706|ref|YP_001817772.1| tRNA modification GTPase TrmE [Opitutus terrae PB90-1]
 gi|205415785|sp|B1ZWP5|MNME_OPITP RecName: Full=tRNA modification GTPase mnmE
 gi|177839920|gb|ACB74172.1| tRNA modification GTPase TrmE [Opitutus terrae PB90-1]
          Length = 452

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 136/455 (29%), Positives = 241/455 (52%), Gaps = 18/455 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M   ++TI A++T A  SA++I+R SGP   ++ E I  +  P PR+     +    G I
Sbjct: 1   MPPLEDTIAALATPAGISALAILRASGPDTRRIAEAILGR-TPLPRRIQRVDYRDRAGHI 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L + FP P S+TGED  E   HG   +   +L++L      R A PGEF++RAF N
Sbjct: 60  LDEVLCVFFPQPRSYTGEDLLEISTHGNPFIAQRVLQDLFAR-GCRPAGPGEFTQRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ DLI ++++     +   + G L     + ID++  + + +EA +DF +
Sbjct: 119 GRLDLSQAEAVMDLIHAQSDRALAAANHQLRGSLGRHVQRIIDRVVRVLAQVEAYIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+ + +   +  ++   +++    I+  + G +IR+G K VI+G  N GKSSL N L 
Sbjct: 179 -EDLPSSNRDTLAAELEMARHEAEQLIATQRYGNLIRDGIKTVIVGAPNVGKSSLLNRLV 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ A+V+  PGTTRD +   + +  + +++ DTAG+  +   +E  GI ++  ++ +AD
Sbjct: 238 GRERALVSAEPGTTRDFIEERIAVGEHCIRLVDTAGLNVSPAPLEALGIHKSLEQLADAD 297

Query: 301 LILLLKEINSKKEISFPK------NIDFIFIGTKSDLYST--YTEEYDHL-----ISSFT 347
           L+L + +++  +    P+        + + +  K DL +     +  D        S+  
Sbjct: 298 LVLAIVDLSDPEPSLPPELAKRLDPKNTLLVANKIDLCAGKCVLDTVDQWFGMVFCSAKI 357

Query: 348 GEGLEELINKIKSILSNKFKKLP-FSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDII 405
           G GL++L   I          +    I  + RH + L+  +  L+ A    +     +++
Sbjct: 358 GVGLDDLFGAIGRWADQWQITVGQDVIAVNARHSHALALALEALDAALDKLRSGDAAELL 417

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A +LR A ++LG I G VD E++LD +F+ FCIGK
Sbjct: 418 ASDLRSALLALGDIAGRVDNERVLDELFATFCIGK 452


>gi|313887368|ref|ZP_07821058.1| tRNA modification GTPase TrmE [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923136|gb|EFR33955.1| tRNA modification GTPase TrmE [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 470

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 150/474 (31%), Positives = 237/474 (50%), Gaps = 38/474 (8%)

Query: 1   MNHE-KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           M H+  ETI A +T      +++IR+SG    Q+ E +  K+   PR+A+      +DG+
Sbjct: 1   MIHDLSETICAPATALG-GGLAVIRISGSLAPQIAERLLGKRL-APREAT-TAGLRIDGQ 57

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D  +   F +P S+TGE+  E   H    +V  ILE +A+    R+A+PGEF+RRA  
Sbjct: 58  LIDLVVATYFAAPHSYTGEEVVELSCHASPYIVRSILEWIAQQEGCRMADPGEFTRRALA 117

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           +GK+DL EAE++ADLI++ T  Q +++ME  +G LS L  +    L      +E +LDFS
Sbjct: 118 HGKLDLAEAEAVADLIAATTATQHKMAMEQHTGRLSHLLNELRATLLRFAGLLELELDFS 177

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV       ++  +  +++ +         G+ ++ G    I+G  N GKSSL NAL
Sbjct: 178 E-EDVAFADRSTLVETLATIQHQLRLLTQSFSTGQELQQGIPTAIIGAPNVGKSSLLNAL 236

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            + + AIV+DIPGTTRD +   L + G L ++ DTAG+R+T D+VE+ GI+R++ ++ +A
Sbjct: 237 LQHERAIVSDIPGTTRDTVEGRLTIRGTLFRLIDTAGLRQTTDLVEQLGIERSYQQISSA 296

Query: 300 DLILLLKEINSKKEISFPK-----------NIDFIFIGTKSDLYST-------------- 334
            LIL +                        +   I +  K DL +               
Sbjct: 297 RLILWVIAPPLPTWDELEAQLSEILRLTSPDSTLIILLNKRDLLTEREVTDWLSNCSSLL 356

Query: 335 -YTEEYDHL-----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             T    H      IS+   +G+E L   + S            +  + RH   L++  R
Sbjct: 357 QRTNGKPHTTSPLAISARAAQGIEALEELMVSSTQTLHSDEETVMLYNLRHYEALTKASR 416

Query: 389 YLEMASLNEKD-CGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
            LE+ S    +    D+I   LR A   +G +TG  +  +++L  IFS FCIGK
Sbjct: 417 ALELVSEGLHNGLTSDLITPYLREAIEEIGLVTGASITSDEVLGFIFSHFCIGK 470


>gi|254452743|ref|ZP_05066180.1| tRNA modification GTPase TrmE [Octadecabacter antarcticus 238]
 gi|198267149|gb|EDY91419.1| tRNA modification GTPase TrmE [Octadecabacter antarcticus 238]
          Length = 428

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 160/437 (36%), Positives = 239/437 (54%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T A  + +SIIR+SGP   + C  +        R+  L      DG ++D+  
Sbjct: 2   DTIFALATAAGKAGVSIIRVSGPDALKSCATMGAVLGDQDRR--LVKLASADGSLIDQAF 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I F    SFTGE   E   HG  A+V  +L+ L  +  LRLA PGEF+RRA ENG +DL
Sbjct: 60  AISFAPRRSFTGEQVVELQTHGSPAIVAAVLKRLGGLN-LRLAEPGEFTRRAMENGVLDL 118

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QRR ++    G L  L   W   L    + +EA +DF + EDV 
Sbjct: 119 AQVEGLADLIDAETESQRRQAVRVFQGALGDLASGWRVSLVRAAALLEATIDFVD-EDVP 177

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                EV   I  +  ++    +  ++ E +R+G+++ ++G  N+GKS+L N LA ++ A
Sbjct: 178 VDVYPEVRGLIDIVTKEVRYEAAGVRVRERVRDGFEVALVGPPNSGKSTLLNRLAGREAA 237

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +DI GTTRDV+ + +DL+G  V I DTAG+R++DD++E  GI R       AD+ + L
Sbjct: 238 ITSDIAGTTRDVIEVKMDLDGLPVTILDTAGLRDSDDVLEGIGIARGKDRASAADVRVHL 297

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E  SK        +D   + +K+DL     ++    +S  TG G++ L+++I S L  +
Sbjct: 298 MENLSKNPAQSGFGLDIY-VKSKADLDKEPVKDA---VSGSTGYGMDRLLDQISSHLRQQ 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE--KDCGLDIIAENLRLASVSLGKITGCV 423
                  + +  RH   L      L+  +L     D  +D++AE+LR+A  SL  + G V
Sbjct: 354 LA--GAGVATRTRHQRALEAAAVALDAVTLGLDVDDMPVDLLAEDLRIAIRSLDSLIGRV 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE +L  IFS FCIGK
Sbjct: 412 DVENVLGEIFSSFCIGK 428


>gi|33864338|ref|NP_895898.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9313]
 gi|46577389|sp|Q7V491|MNME_PROMM RecName: Full=tRNA modification GTPase mnmE
 gi|33641118|emb|CAE22248.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus str. MIT 9313]
          Length = 470

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 137/452 (30%), Positives = 227/452 (50%), Gaps = 28/452 (6%)

Query: 15  ALPSAISIIRLSGPSCFQVCEF---ICKKKKPFPRKASLRYFFGLDG-RILDKGLLIVFP 70
                I+++RLSGP+   V      I  ++     +    +     G   +D+ L+++  
Sbjct: 21  PGQGGIAVVRLSGPAAEVVGRSVVSIPGQQLWVSHRVLYGHVMDESGKERIDEVLVLLMK 80

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
            P SFTGED  E H HGG+  V  +LE +   P++R A PGEFS+RA  NG++DL +AE+
Sbjct: 81  GPRSFTGEDVVEIHCHGGLMAVQRVLERVLAQPHVRRALPGEFSQRAVLNGRLDLTQAEA 140

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +++L+++ +    +L+M G+ G +        ++L    S +EA +DF E  D+      
Sbjct: 141 ISELVAARSRRAAQLAMTGVDGGIQRRITSLRERLLDQLSELEARVDFEE--DLPPLDGA 198

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           E+L ++  ++ ++   +   K G+++R G ++ ++G  N GKSSL N L++++ AIVTD+
Sbjct: 199 ELLLELQCVRRELEQLVEDAKRGDVLRQGLQVALVGRPNVGKSSLLNRLSRRERAIVTDL 258

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA-------DLIL 303
           PGTTRDVL  ++ LEG  + + DTAGIR T D +E+ GI R+   +  A       DL L
Sbjct: 259 PGTTRDVLESEIVLEGVPITLVDTAGIRATQDALEQLGIDRSHQALAAADVAVLVFDLSL 318

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTY---------------TEEYDHLISSFTG 348
                ++      P ++  + +G K+DL                    +  D ++S+ TG
Sbjct: 319 GWTADDAALLAQIPDDLPRLLVGNKADLQPASMAASLMVASLGNEVDGKTVDVMLSALTG 378

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           +G E LI  +         +      + ++     +  +         E     D    +
Sbjct: 379 QGEEALIKAVLKTCGASEAQGLVVALNQRQQDLAAAAAIALARTQEAAEHQLPWDFWTID 438

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LR A  SLG+ITG    E +LD IFS+FCIGK
Sbjct: 439 LRQAISSLGEITGEEITEAVLDRIFSRFCIGK 470


>gi|282856945|ref|ZP_06266200.1| tRNA modification GTPase TrmE [Pyramidobacter piscolens W5455]
 gi|282585236|gb|EFB90549.1| tRNA modification GTPase TrmE [Pyramidobacter piscolens W5455]
          Length = 455

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 142/456 (31%), Positives = 226/456 (49%), Gaps = 25/456 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLDGRILD 62
           +TI A+ST    S I+I+RLSGP  + + +   + +   P   R A         G ++D
Sbjct: 4   DTIAAISTAWGNSGIAIVRLSGPDSWAIAQRQVRLQTEAPLKVRFARNAVLLDESGEVID 63

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
             L++ F  P S+TGED  E H HGG       LE L      R+A PGE++RRAFENG+
Sbjct: 64  HILVLPFRGPRSYTGEDLVELHCHGGSLAAQRCLELLI-SGGARMALPGEYTRRAFENGR 122

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++  LI + +    R +   + GEL+    +  ++LT + + IE  LDF E E
Sbjct: 123 LDLSQAEAVGALIQARSNEALRAANRTLDGELTRAVSEIYEELTSLGAEIEVGLDFPE-E 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV   + + +   +  ++  ++  + +   G I+R G ++ I+G  NAGKSSL NAL K+
Sbjct: 182 DVPYIADESLAGRLEIVRQSLADLLERCSSGVILREGIRVAIVGRPNAGKSSLLNALLKE 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENADL 301
             AIVT IPGTTRDV+   L   G  +++ DTAGI E   D VE  G++R    ++ AD+
Sbjct: 242 SRAIVTAIPGTTRDVIEAVLTYRGIPLRLVDTAGITENYHDEVEAIGVERARAAMKEADV 301

Query: 302 ILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHLISSF 346
            + + + +          +    +   + +  K+DL    +E              +S+ 
Sbjct: 302 CVWVIDGSEPLHQEDVDRVHELADTPHLVVLNKADLPQQISEASLTALIPASTVISVSAA 361

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD--I 404
            G  L+EL   +  ++ +    L   + +  R +  L   +  +    L     GLD  +
Sbjct: 362 KGLRLDELKESLVGLV-SGTGALDTGLNASSRQVEELRGAIASVGTG-LKALGDGLDQAL 419

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +  A  SL +I G    E LL  IF +FCIGK
Sbjct: 420 VSSCVGDARRSLSRILGGDRDEDLLHEIFGRFCIGK 455


>gi|307243432|ref|ZP_07525588.1| tRNA modification GTPase TrmE [Peptostreptococcus stomatis DSM
           17678]
 gi|306493156|gb|EFM65153.1| tRNA modification GTPase TrmE [Peptostreptococcus stomatis DSM
           17678]
          Length = 459

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 151/468 (32%), Positives = 237/468 (50%), Gaps = 44/468 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSG----------PSCFQVCEFIC----KKKKPFPRKASL 50
            +TI A++T                        P   ++   I     K         +L
Sbjct: 4   DDTIAAIATAPGQ----------GGIGIIRISGPDSLKIANKIFSPFHKGSILDYPIRTL 53

Query: 51  RYFFGLDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109
            Y   LDG  I+D+ LL     P S+T ED  E + HGG   V  ILE + K    R+A 
Sbjct: 54  IYGNILDGDTIIDEVLLAYMKGPNSYTAEDVIEINCHGGFISVRKILELVLKS-GARMAQ 112

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
            GEF++RAF NG+IDL +AE++ D+I+++TE    ++   + G LS       D++T I 
Sbjct: 113 EGEFTKRAFLNGRIDLSQAEAVIDIINAKTEESHNVAQSQLEGTLSKKIRSLRDQITGIL 172

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           + +E  +D+ E ED++  + KE+++  + + N +         G+I+R G K  ILG  N
Sbjct: 173 AQLEVAIDYPE-EDIEFITYKELVDQTIDVNNQVKKLYQTADTGKILREGLKTAILGKPN 231

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKSSL N +  +D AIVTDIPGTTRDV+   ++++G  +KI DTAGIR TDD+VEK G+
Sbjct: 232 VGKSSLMNLILGEDRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRATDDLVEKIGV 291

Query: 290 KRTFLEVENADLILLLKEIN---SKKEISFPKNIDFI---FIGTKSDLYSTYTEE----- 338
           +++   ++ ADL L++ + +    +++I   +NID      I  K+DL      E     
Sbjct: 292 EKSREHMKLADLALVVLDSSRPLDQEDIQILENIDQAKSLVILNKTDLACQMDIESLKSY 351

Query: 339 ----YDHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
                   IS+  G+G++ + ++++ +    K       + ++ RH   + + +  +  A
Sbjct: 352 VDTKNIINISALKGQGIDLIHDRMEDLVFEGKISDSSDLMITNSRHRDAIYKAMVSIGDA 411

Query: 394 SLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +  D    D I  +L+ A  SLG I G    E LLD IFS FCIGK
Sbjct: 412 INSLNDRLPYDFIEVDLKDAWDSLGCINGDTIEEDLLDTIFSNFCIGK 459


>gi|121611908|ref|YP_999715.1| tRNA modification GTPase TrmE [Verminephrobacter eiseniae EF01-2]
 gi|205829187|sp|A1WSU0|MNME_VEREI RecName: Full=tRNA modification GTPase mnmE
 gi|121556548|gb|ABM60697.1| tRNA modification GTPase trmE [Verminephrobacter eiseniae EF01-2]
          Length = 490

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 160/492 (32%), Positives = 240/492 (48%), Gaps = 57/492 (11%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
              + I A+++ A   AI I+R+SG +   + + +C +    PR A+   F    G+ +D
Sbjct: 2   RRHDPIVAIASAAGRGAIGIVRVSGNALGALAQALCGRAL-QPRMATYLAFRDARGQPID 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM-------------PNLRLAN 109
           +GL + FP P S+TGED  E   HGG  V+  +L    +              P LRLA 
Sbjct: 61  QGLALYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAGADPATGRPCLPGLRLAQ 120

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+ RAF N KIDL +AE++ADLI + TE   R +   +SG  S+      D L  +R
Sbjct: 121 PGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSAGIHGLCDALIALR 180

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           + +EA LDF E E+       +    +  L+  + + + Q + G ++R+G ++VI G  N
Sbjct: 181 TLVEASLDFPE-EETDFLHQADARGQLSRLRQALGAVLQQARQGALLRDGIEVVIAGQPN 239

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
           AGKSSL NALA  ++AIVT + GTTRD +   + +EG  ++I DTAG+R +DD VE+ GI
Sbjct: 240 AGKSSLLNALAGAELAIVTPVAGTTRDKVQQTIQIEGVPLRIIDTAGLRASDDEVERIGI 299

Query: 290 KRTFLEVENADLILLLKE---------INSKKEIS------FPKNIDFIFIGTKSDLYST 334
            R++  +  AD +L L +         I    EI        P  +  I +  K D  + 
Sbjct: 300 ARSWEAMAAADAVLFLHDLARAQTPKYIADDAEIERALARKLPPGVAVIDVWNKLDCVAA 359

Query: 335 YTE------------------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
             E                             +S+ TG+GL+ L   +  +   +     
Sbjct: 360 PAELAAPTAPTESAAVPPASARPAPAPRPAVQLSARTGQGLDGLRRILLEVAGWQSVPEG 419

Query: 371 FSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428
             I    RH+  L     +LE A   L  +   L+++AE LRLA  +L  ITG    + L
Sbjct: 420 ICIA-RARHVQALQMAAAHLEQAADQLQARGAALELLAEELRLAQNALDSITGAFTSDDL 478

Query: 429 LDIIFSKFCIGK 440
           L  IF++FCIGK
Sbjct: 479 LGAIFARFCIGK 490


>gi|85706893|ref|ZP_01037983.1| tRNA modification GTPase [Roseovarius sp. 217]
 gi|85668504|gb|EAQ23375.1| tRNA modification GTPase [Roseovarius sp. 217]
          Length = 428

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 164/437 (37%), Positives = 249/437 (56%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+ST    + +++IR+SGP   + C  +C    P PR+A LR      G  LD+ L
Sbjct: 2   DTIYALSTAQGKAGVAVIRVSGPLAAEACRRLCG-DVPEPRRAVLRVLRDEGGERLDQAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +++F   ESFTGE +AEF +HG +AVV  +L +L ++  LR A  GEF+RRA ENG++DL
Sbjct: 61  VLIFAENESFTGESTAEFQLHGSVAVVASVLADLGRIDGLRPAEAGEFTRRALENGRLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QR+ ++   SG L      W   L    + +EA +DF++ E+V 
Sbjct: 121 AQVEGLADLIEAETEAQRKQALRVFSGALGERCEGWRRSLIRAVALLEATIDFAD-EEVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV   I  +   + + I+   + E IR G+++ I+G  N GKS+L NALA +D A
Sbjct: 180 VDVSPEVTGLIQGVIQGLEAEIAGVSVSERIRTGFEVAIVGAPNVGKSTLLNALAGRDAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRDV+ + +DL G  V + DTAG+RET D VE  GI R       ADL + L
Sbjct: 240 ITSEFAGTTRDVIEVRMDLAGLPVTLLDTAGLRETTDAVESIGIARARARAAQADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E     E  F    D I +  K+D+            S  TG GL EL+++I ++L   
Sbjct: 300 IEDGGDFE--FVPEADDIVVRAKADISGDLMGAV----SGKTGAGLSELVDRIAAVL--G 351

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            + +   + + +RH   + + ++ L+++  +L   +   +I AE LR+A  +L  + G +
Sbjct: 352 ARAMGAGLATRERHRQAMVRGLKALQVSLDTLPLGEVMAEIAAEELRVAIRALDSLVGRI 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE +LD IF+ FC+GK
Sbjct: 412 DVETVLDEIFASFCLGK 428


>gi|291541857|emb|CBL14967.1| tRNA modification GTPase TrmE [Ruminococcus bromii L2-63]
          Length = 455

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 129/459 (28%), Positives = 222/459 (48%), Gaps = 23/459 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGL-- 56
           MN+  +T+ A+ST      I +IR+SG    ++ + I      K           FG   
Sbjct: 1   MNY--DTVAAISTAQGEGGIGVIRISGDDALRIADKIFYSVSGKKVTEMKGYTASFGKIS 58

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            +G  +D+ + +VF +P S+TGED  E   HGG+ +   +L  +        A  GEF++
Sbjct: 59  ENGEDIDEAVALVFKAPHSYTGEDVVELSCHGGLYITKRVLRAVL-NAGAVPAQAGEFTK 117

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NGKIDL EAE++ D+IS+++    R ++    G L        + L  + + + A 
Sbjct: 118 RAFLNGKIDLTEAEAVIDIISAKSRGAARSALCVKEGALRKKIDGVKNDLLSMAAHLSAW 177

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
            D+ E ED+   ++  V+           S +     G+ ++ G   VI G  N GKS+L
Sbjct: 178 ADYPE-EDIAEVTADSVIETCDNAIKCFKSLLDSYDCGQAVKKGIDTVIAGRPNVGKSTL 236

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L+  + +IVTDIPGTTRD++   + +   ++ +SDTAG+R+T+D VEK G+ R    
Sbjct: 237 MNLLSGYEKSIVTDIPGTTRDIVEDTVTVGDVVLNLSDTAGLRDTEDTVEKIGVDRARKR 296

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE-------YDHL 342
           +E   L+L + + + + +      I   K +  I +  K+DL +    E       Y   
Sbjct: 297 LEQCGLLLAVFDNSRELDEDDYALIESAKLVPSIAVINKTDLDNKLDIEYISKNIKYIVY 356

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCG 401
           IS+ +G+G +EL   ++ I   +       + S++R    +   +  +  A    K    
Sbjct: 357 ISAISGDGRDELTKAVEKIAGTQNFNPSEGVLSNERQRIAVKNALDSVVEAMNALKCGMT 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D +  ++  A   L ++TG    ++++D +F  FC+GK
Sbjct: 417 FDAVTVSIEDAISHLLELTGERTSDEVVDRVFHNFCVGK 455


>gi|154499098|ref|ZP_02037476.1| hypothetical protein BACCAP_03090 [Bacteroides capillosus ATCC
           29799]
 gi|150271938|gb|EDM99164.1| hypothetical protein BACCAP_03090 [Bacteroides capillosus ATCC
           29799]
          Length = 458

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 148/459 (32%), Positives = 225/459 (49%), Gaps = 27/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLDGR 59
           +TI AV+T     AI I+RLSGP   +    + K            R+      +  +G 
Sbjct: 3   DTIAAVATPMARGAIGILRLSGPEAVRAASAVFKSVSGRALEEYEGRRLVYGTLYDREGN 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ L      P S+TGED+AE   HG  AV+   LE L     +R A PGEF+RRAF 
Sbjct: 63  AIDQVLATYTRGPGSYTGEDTAELQCHGSPAVLTLGLEALF-AQGVRQAGPGEFTRRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++ADLI +ET    R +   +SG L        D LT + +   A LD+ 
Sbjct: 122 NGRLDLTQAEAVADLIDAETASAVRQAAGQLSGALGRRVAAVYDALTDLTAHFCAVLDYP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + ED+  F ++ +   +   + ++S+ ++    G  + +G    I+G  NAGKSSL NAL
Sbjct: 182 D-EDIDPFRAETMERALSQAQRELSALLATYGRGRQLVHGVPCAIVGRPNAGKSSLLNAL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              D AIVTDIPGTTRD +     L G L+++ DTAG+R+T D VE+ G++R+   +  A
Sbjct: 241 VGYDRAIVTDIPGTTRDTIEEKCRLGGVLLRLIDTAGLRDTTDTVEQLGVERSRAALAEA 300

Query: 300 DLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-------- 343
           +L L+L +          +  E +       I + TKSDL                    
Sbjct: 301 ELALVLIDPQGGVTAEDLAILEQARAAAEKVIVVLTKSDLDRGPCIGLTLWGENCPPVVS 360

Query: 344 -SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401
            S+ TGEGLEEL   + ++     +     + ++ R      + +  +  A S       
Sbjct: 361 LSAKTGEGLEELEAAVAALFPQGEENWGE-LLTNARQAEAAGRALEAVGSALSALTAGIP 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D +  ++  A  +LG +TG    E + D IFS+FC+GK
Sbjct: 420 ADAVFSDVEAALDALGALTGRSVQEDVTDRIFSRFCVGK 458


>gi|46198870|ref|YP_004537.1| tRNA modification GTPase TrmE [Thermus thermophilus HB27]
 gi|81830635|sp|Q72K85|MNME_THET2 RecName: Full=tRNA modification GTPase mnmE
 gi|46196493|gb|AAS80910.1| thiophene and furan oxidation protein thdF [Thermus thermophilus
           HB27]
          Length = 433

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 143/445 (32%), Positives = 230/445 (51%), Gaps = 17/445 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRYFFGL- 56
           M   ++ I A++T     AI ++RLSG    ++   + + K P   K    +L       
Sbjct: 1   MRALRDPICAIATPLGKGAIGVVRLSGEGALEIAARVWRGKDPRRLKGGRFTLGEVVDPK 60

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G  +D+ LL+VF +P S+TGED  EF  HG +AV+  ++E L      R A  GEF+ R
Sbjct: 61  TGEAIDQALLLVFRAPRSYTGEDLVEFQTHGSLAVLRRVMEVLV-AEGARPAGRGEFTFR 119

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           A+ NGK+DL +AE++  LI +E E+ RR ++  + G LS       ++L  + + I+A L
Sbjct: 120 AYMNGKLDLAQAEAVLALIEAEGELARRQALRALEGALSRRIEALENRLLDLLAHIQALL 179

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+ E E V+   ++  L     +  ++ + ++Q K   + + G ++ ++G  NAGKSSL 
Sbjct: 180 DYPE-EGVEPLEAERTL---REVLAEVEALLAQAKASRLAQKGARLALIGAPNAGKSSLL 235

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL   + A+V+ IPGTTRD L   L+L G  +   DTAG+RET+D VE+ G++R     
Sbjct: 236 NALLGYERALVSPIPGTTRDYLEAPLELFGIPLVAVDTAGVRETEDPVERMGVERALRIA 295

Query: 297 ENADLILLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           E ADL+L + + +  K    P        + TKSDL   + +     +SS TGEGL  L 
Sbjct: 296 EEADLVLYVVDRSQPKPAPPPLPWARTLKVATKSDLPPAWEDPEFLPVSSLTGEGLGRLK 355

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
             ++  L     +    +   +R +  L +    LE A         D++   L  A+ +
Sbjct: 356 EALREAL---LGREGGEVLLTERQVEALLRARERLEEALA----LPEDLMGLALEEAARA 408

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           L  +TG    E+++  +F  FC+GK
Sbjct: 409 LALLTGKEVAEEVVARVFQNFCVGK 433


>gi|268318299|ref|YP_003292018.1| tRNA modification GTPase TrmE [Rhodothermus marinus DSM 4252]
 gi|262335833|gb|ACY49630.1| tRNA modification GTPase TrmE [Rhodothermus marinus DSM 4252]
          Length = 462

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 144/464 (31%), Positives = 238/464 (51%), Gaps = 26/464 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFGLD 57
           M    +TI A++T    +A++I+RLSGP   ++     +           A   Y    D
Sbjct: 1   MRQRGDTIAAIATARGRAALAIVRLSGPEACRIAAACFRGADLQAVPSHTAHFGYVLSPD 60

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  +D+ +  VF +P S+TGED  E   HGG      ILE L      RLA PGEF+ RA
Sbjct: 61  GEPIDQVVATVFRTPRSYTGEDVVELTCHGGDLAPQLILETLL-HHGARLAEPGEFTLRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL +AE++ADLI + +    R+S+  + G  S    +    L  + +++E +LD
Sbjct: 120 FLNGKLDLAQAEAVADLIHAGSTRAHRVSLAHLQGRYSEQLQRLRSDLLELCAYVELELD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FS+ EDV+     ++   +      +   +   +LGE++R+G ++VI G  NAGKS+L N
Sbjct: 180 FSD-EDVEFADRAQLEALLDRTGRLLDELLRSYRLGELLRDGVRVVIGGRPNAGKSTLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  +D AIV+ +PGTTRD +  + ++EG   +  DTAG+R T D +E EG++R    + 
Sbjct: 239 ALLGQDRAIVSPVPGTTRDQIEAEAEIEGLRFRFVDTAGLRATADEIEAEGVRRAQQAIA 298

Query: 298 NADLILLLKEIN---SKKEISFPKN-------IDFIFIGTKSDLYSTYTEEYDHLISSFT 347
            A++++ + ++    +  E ++          +  I +G K DL  +  E          
Sbjct: 299 AAEVLVYVFDLTVGLAPDEQAYLTRLRTEQPALPVIVVGNKRDLLDSAPELLALDRPVLA 358

Query: 348 GEG---------LEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMA-SLN 396
                       L+ L+ ++ + ++     +  S +  ++RH  HL++    ++ A +  
Sbjct: 359 LSARRAREDAAELQPLVRELVAAVTADLGSMDDSAVVMNQRHRQHLARAREAVQAARAAL 418

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++    D++A  LR A   LG ITG +  E +LD IFS+FCIGK
Sbjct: 419 DQGLSGDLLALELRRALHELGAITGEITTEDVLDQIFSRFCIGK 462


>gi|242310493|ref|ZP_04809648.1| tRNA modification GTPase TrmE [Helicobacter pullorum MIT 98-5489]
 gi|239522891|gb|EEQ62757.1| tRNA modification GTPase TrmE [Helicobacter pullorum MIT 98-5489]
          Length = 461

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 139/463 (30%), Positives = 241/463 (52%), Gaps = 25/463 (5%)

Query: 1   MN-HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGLD 57
           MN +  +TI A +T    S+++IIRLSG    ++   + K   K P  R A L   +  +
Sbjct: 1   MNFNTNDTIVAPATTYGKSSLNIIRLSGQDSLKIASKLAKIDLKNPKVRHAKLTKIYFEN 60

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G +LD+ ++I F SP S+T ED  EF  HGG  +   ILEE  K    RLANPGEF++RA
Sbjct: 61  GELLDECIIIYFKSPHSYTTEDVIEFQCHGGTFIAQNILEECLK-YGARLANPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F  G+IDL +A+++A LI S      ++ M  ++GE+          L  + +  E  +D
Sbjct: 120 FLGGRIDLSQAQAVAKLIESSNANAHKMLMRHLNGEMQEFCENLRTDLITLLAHSEVFID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +++EE  Q+   K + N +  +   + S + Q    + +  GYK+ I+G  N GKSS  N
Sbjct: 180 YADEELPQDLL-KNLQNKLTSILKTLQSLLEQSIQKKSLFEGYKLCIIGKPNVGKSSFLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL   + AIV+DI GTTRD +  +  LEG+L+++ DTAGIR++ DI+E +GI+R+  + +
Sbjct: 239 ALLHNERAIVSDIAGTTRDSIEENFVLEGHLLRLIDTAGIRKSQDIIENKGIERSLQKAK 298

Query: 298 NADLILLLKEINSKKE------ISFPKNI----DFIFIGTKSDLYSTYTEE-------YD 340
            +D+++ L + +   +      I   KN       I +  K+DL + +  E        +
Sbjct: 299 ESDILIALFDSSRPLDHEDLEIIELLKNYQDSKKIIVLLNKTDLQNHFDSEVLKPFLPLN 358

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNE 397
             + +      E L++  K+ L +       +   +   +     +   ++ L  + +  
Sbjct: 359 LCLKNTNLNSQESLLSNFKNHLISLLNSQESTQSLLLISQYQFQAVKNCIQALYDSKIPL 418

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  L++ + ++  A  ++  IT   +  Q+LD++F +FC+GK
Sbjct: 419 ENGELELFSFHINEALRAIASITKPYEYSQMLDVMFGEFCLGK 461


>gi|212697394|ref|ZP_03305522.1| hypothetical protein ANHYDRO_01964 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675586|gb|EEB35193.1| hypothetical protein ANHYDRO_01964 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 454

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 141/455 (30%), Positives = 238/455 (52%), Gaps = 22/455 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRY----FFGLDG 58
           + TI A+ST      ISI+R+SG   F + + I K   K+   R    R         DG
Sbjct: 3   ESTIAAISTPQGSGGISIVRMSGDKSFDIIKKIFKPINKRALDRDKDNRMMRYGHIEKDG 62

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           RI D+ ++     P ++T ED  E + HG +  V  IL  L  +    LA+ GEF++RAF
Sbjct: 63  RIYDEVMVNFMKGPNTYTREDICEINCHGSMISVRDILNLLLDL-GCELADRGEFTKRAF 121

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ D+I+S  E+ ++  ++ +SG L     +         S IE  ++F
Sbjct: 122 LNGRIDLSQAEAVLDIINSTNEISQKQGLKQLSGLLREKIEEIRKIELEALSRIEYSINF 181

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E  D ++    +++  +    ++I+  +S    G+++++G +  I+G  N GKSSL N 
Sbjct: 182 TE--DGEDLPLDDIVEYMDRANDEITKLLSTANKGKLVKDGIETTIIGKPNVGKSSLLNV 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++ AIVTDIPGTTRD +T  ++L    +KI+DTAGIRET D VEK G++R+    + 
Sbjct: 240 LLNENRAIVTDIPGTTRDSITEYINLGNLTLKINDTAGIRETHDEVEKIGVQRSKELAQG 299

Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE------YDHLISSF 346
           ADLI+ + + + + +      +   K  + I I  K DL S  ++E           S  
Sbjct: 300 ADLIIAIFDRSREIDEEDKIILDLLKGKNAIIILNKIDLDSKISKEDFDENFTIIETSMV 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDII 405
           + +G+++L   I  I  +K       + ++ RH   L+ +   L+ +  + K    +D +
Sbjct: 360 SRDGIDKLEGAIFDIFDSKELNKESLMITNLRHERLLNSSKEKLQSSLKDIKSFVPIDCV 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +LR +   LG I G    ++++D +F +FC+GK
Sbjct: 420 EVDLRSSYDDLGLIIGETVSDEIMDKVFREFCVGK 454


>gi|78357435|ref|YP_388884.1| tRNA modification GTPase TrmE [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123552067|sp|Q30YQ7|MNME_DESDG RecName: Full=tRNA modification GTPase mnmE
 gi|78219840|gb|ABB39189.1| tRNA modification GTPase trmE [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 468

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 136/467 (29%), Positives = 227/467 (48%), Gaps = 30/467 (6%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRYFFGL 56
           +H  +TI AV+T      + IIRLSGP    +   +     P      PR     +    
Sbjct: 4   HHGTDTIAAVATPLGQGGVGIIRLSGPRSHAILTALFDSTSPGFSGFRPRVLHHGHIHDG 63

Query: 57  DGR--ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             +  ILD  L +  P+P +FTGED  E + HGG A++  +L+ + +    R A  GEF+
Sbjct: 64  TPQRRILDDVLAVHMPAPRTFTGEDVVEINCHGGPAILAAVLDAVLR-QGARPAAHGEFT 122

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAF NG++DL +AE++A++I++      RL+   + G L        ++L  +R  +  
Sbjct: 123 RRAFLNGRMDLTQAEAVAEMIAAPAAEGVRLAQARLDGMLGRHINALRERLELVRVQLCV 182

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF E+E V+  +  + ++ +    + I   I   +     R G ++V+ G  NAGKSS
Sbjct: 183 AVDFPEDE-VECLAPADFMHAVEETADAIRKLIGNYERARCWREGAQVVLAGQVNAGKSS 241

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL  +  AIVTD+PGTTRD L   + L+G  V++ DTAG+RET DIVE+EG++ +  
Sbjct: 242 LLNALLGRKRAIVTDVPGTTRDFLEESITLDGLAVRLVDTAGLRETGDIVEQEGVRMSRD 301

Query: 295 EVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSD---------LYSTYTEEY 339
               ADL+LL+ +         ++ ++  +    + +  K+D            +     
Sbjct: 302 LAAQADLVLLVVDSRLGTGPHEQELMAAMEAGSVLVVLNKTDAATEDELDRCVRSLAGRP 361

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLP-----FSIPSHKRHLYHLSQTVRYLEMAS 394
              +S+  G+G++ L   ++ ++  +   L        +  + R    L + +  LE  +
Sbjct: 362 HVAVSAREGKGMDSLAAAVREMVLRRSNALTADAAASDMAPNLRQTEALRRALEELEALA 421

Query: 395 LNE-KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +       D+    L  A   L +ITG    + +L+ IF  FCIGK
Sbjct: 422 ADIVSGVPYDLAGVRLESACSVLSEITGETTPDDILNRIFDSFCIGK 468


>gi|262277801|ref|ZP_06055594.1| tRNA modification GTPase TrmE [alpha proteobacterium HIMB114]
 gi|262224904|gb|EEY75363.1| tRNA modification GTPase TrmE [alpha proteobacterium HIMB114]
          Length = 445

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 158/446 (35%), Positives = 239/446 (53%), Gaps = 18/446 (4%)

Query: 9   FAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIV 68
           +A+ST    S I+IIR+SG S  Q+   I +     PR A L+ F+  +G ++D+G+LI 
Sbjct: 4   YALSTPPGVSGIAIIRISGDSALQIANQITRTVIDHPRSALLKSFYDQEGELIDEGILIW 63

Query: 69  FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEA 128
           +P  +S+TGE   E H+HG  AV+N +LE+L    + RLA PGEF++ A++N +I+L EA
Sbjct: 64  YPEGQSYTGEHLIEIHIHGSKAVINKLLEDLGDRKDCRLAEPGEFTKTAYQNNRINLYEA 123

Query: 129 ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS 188
           ES+ADL+ +ETE QR  ++   +     L  +W + +  + S  EA +DFSE ED+    
Sbjct: 124 ESIADLLQAETEAQRIQALRLKNSSPKFL--EWRETILDVLSKTEASIDFSE-EDLPEGI 180

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
            K     I  + +DI   + +  +GEIIR+G+KI I+G  NAGKSS  N L K+  AIV+
Sbjct: 181 LKNNEEKIKSIVSDIDEMLDET-MGEIIRDGFKIAIIGPPNAGKSSFLNLLVKRQAAIVS 239

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
            I GTTRD++ +   +  Y V ++DTAGIR   + +EK G++        A+L +L+ + 
Sbjct: 240 SIKGTTRDIIEVKYHINNYPVILTDTAGIRNAKNKIEKTGVELALNASNEANLDILILDG 299

Query: 309 NSK---KEISFPKNIDFIFIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEEL 354
             K   K I        + I  K D  S   ++               +S     G+ +L
Sbjct: 300 TEKKIPKNILKLITHKTLIILNKKDKKSFNAKKIIKVLKGYKFQDLIEVSIKNKTGINKL 359

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
             ++K I+S        ++ S  RH   L +    L       K   ++  AE LRLAS 
Sbjct: 360 NLRLKKIVSEIDTAQSTTLISRVRHRALLKKCSNRLHDFLKISKSDEVEKAAEELRLASN 419

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LG I G + VE++L  IF  FCIGK
Sbjct: 420 NLGHIVGFIGVEEILGKIFQDFCIGK 445


>gi|27904530|ref|NP_777656.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|29839495|sp|P59569|MNME_BUCBP RecName: Full=tRNA modification GTPase mnmE
 gi|27903927|gb|AAO26761.1| putative tRNA modification GTPase trmE [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 459

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 156/459 (33%), Positives = 246/459 (53%), Gaps = 19/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN   +TI +  T    S++ IIR+SG   F+V   +  +     R A    F  L G+I
Sbjct: 1   MNVFNDTIVSRVTSEGKSSVGIIRISGKLAFEVSIKVLNRDYLPIRTACYLSFLDLSGKI 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+G+++ FP P SFTGED  E   HG   +++ ++  +  +P +RLANPGEFS RAF N
Sbjct: 61  IDQGIVLWFPGPSSFTGEDVLELQGHGNPIIIDLLITTILSIPGIRLANPGEFSERAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL +AES++DLI++ +E   R +M+ + G  S      I   T  R+ IEA ++FS+
Sbjct: 121 GKIDLAQAESISDLINATSEQAARSAMQSLQGLFSIYINNLIKDFTKFRAKIEAQINFSD 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E   +     + ++I  + + I    +    G ++R G K+VI G  N+GKSSL NAL+
Sbjct: 181 HEINADNLDVFIEHEINRIISRIKKIRNTAIQGSVLREGIKVVISGAPNSGKSSLLNALS 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AIVT+ PGTTRDV+  ++ + G L  + DTAG+R T++ +E  GI+R + E++ A+
Sbjct: 241 LTNRAIVTNFPGTTRDVIYENIIINGVLFILIDTAGLRITNNPIENIGIERAWNEIKLAE 300

Query: 301 LILLLKEINSKKE----------ISFPKNIDFIFIGTKSDL------YSTYTEEYDHLIS 344
            IL + + +   +           S  K      +  KSDL                L+S
Sbjct: 301 HILFVIDGSRSVQNQLKNYNNFIKSLSKTSCITIVFNKSDLSKFKINSDLRNLNNGVLVS 360

Query: 345 SFTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVR-YLEMASLNEKDCG 401
           S TG G+E L   +     + F+       + + +RH+  LS  +  +L      +K   
Sbjct: 361 SKTGVGIEALRQHLYFSFKSSFEVNNSEGVVSARRRHINILSMVLEKFLSSKKDWKKINN 420

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++++A++LR     LG ITG +  ++LL  IFS+FCIGK
Sbjct: 421 IELLADDLRTCQDLLGGITGKITSDELLSEIFSEFCIGK 459


>gi|256545944|ref|ZP_05473299.1| tRNA modification GTPase TrmE [Anaerococcus vaginalis ATCC 51170]
 gi|256398366|gb|EEU11988.1| tRNA modification GTPase TrmE [Anaerococcus vaginalis ATCC 51170]
          Length = 454

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 143/456 (31%), Positives = 240/456 (52%), Gaps = 24/456 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-------KKPFPRKASLRYFFGLD 57
           + TI A+ST      ISI+R+SG   F + + I K        K+   R     +    D
Sbjct: 3   ESTIAAISTPQGSGGISIVRMSGDKSFDIIKKIFKPINNRALDKEKDNRMMRYGHI-EKD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           GRI D+ ++     P ++T ED  E + HG +  V  IL  L  M    LA+ GEF++RA
Sbjct: 62  GRIFDEVMVNFMKGPNTYTREDICEINCHGSMISVRDILNLLLDM-GCELADRGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+S  E+ ++  ++ +SG L     +  +      S IE  ++
Sbjct: 121 FLNGRIDLSQAEAVLDIINSTNELSQKQGLKHLSGLLREKIEEIRNIELEALSRIEYSIN 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F+E  D ++     +++ +    ++IS  ++    G+++++G +  I+G  N GKSSL N
Sbjct: 181 FTE--DGEDLPVDNIIDFMQKAYDEISKLLATANKGKLVKDGIETTIIGKPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ AIVTDIPGTTRD +T  ++L    +KI+DTAGIRET D VEK G++R+    E
Sbjct: 239 VLLNENRAIVTDIPGTTRDSITEYINLGNLTLKINDTAGIRETHDEVEKIGVQRSKELAE 298

Query: 298 NADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE------YDHLISS 345
           +ADLI+ + + + K +      +   K  + I I  K DL S  ++            S 
Sbjct: 299 DADLIIAIFDRSRKLDHEDKMILDMLKGKNAIIILNKIDLDSKISKIDFDDSFKIIETSM 358

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDI 404
            + +G+++L   I  I  +K       + ++ RH   L+ + + LE +  + K    +D 
Sbjct: 359 VSRDGVDKLEGAIFDIFDSKELNKESLMITNLRHERLLNSSRKKLESSLDDIKAYVPIDC 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +LR +   LG I G    ++++D +F +FC+GK
Sbjct: 419 VEVDLRSSYDDLGLIIGETVSDKIMDKVFREFCVGK 454


>gi|124024442|ref|YP_001018749.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9303]
 gi|166234806|sp|A2CDC4|MNME_PROM3 RecName: Full=tRNA modification GTPase mnmE
 gi|123964728|gb|ABM79484.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus str. MIT 9303]
          Length = 465

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 138/448 (30%), Positives = 228/448 (50%), Gaps = 25/448 (5%)

Query: 15  ALPSAISIIRLSGPSCFQVCEF---ICKKKKPFPRKASLRYFFGLDG-RILDKGLLIVFP 70
                I+++RLSGP+   V      I  ++     +    +     G   +D+ L+++  
Sbjct: 21  PGQGGIAVVRLSGPAAEVVGRSVVSIPGQQLWVSHRVLYGHVMDESGKERIDEVLVLLMK 80

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130
            P SFTGED  E H HGG+  V  +LE +   P++R A PGEFS+RA  NG++DL +AE+
Sbjct: 81  GPRSFTGEDVVEIHCHGGLMAVQRVLERVLAQPHVRRALPGEFSQRAVLNGRLDLTQAEA 140

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +++L+++ +    +L+M G+ G +        ++L    S +EA +DF E  D+    + 
Sbjct: 141 ISELVAARSRRAAQLAMTGVDGGIQRRITSLRERLLDQLSELEARVDFEE--DLPPLDAA 198

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           E+L ++  ++ ++   +   K G+++R G ++ ++G  N GKSSL N L++++ AIVTD+
Sbjct: 199 ELLLELQCVRRELEQLVEDAKRGDVLRQGLQVALVGRPNVGKSSLLNRLSRRERAIVTDL 258

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA-------DLIL 303
           PGTTRDVL  ++ LEG  + + DTAGIR T D +E+ GI R+   +  A       DL L
Sbjct: 259 PGTTRDVLESEIVLEGVPITLVDTAGIRATKDALEQLGIDRSHQALAAADVAVLVFDLSL 318

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTY----------TEEYDHLISSFTGEGLEE 353
                ++      P ++  + +G K+DL               +  D ++S+ TG+G E 
Sbjct: 319 GWTADDAALLAQIPDDLPRLLVGNKADLQPASMTASLSNEVDGKTVDVMLSALTGQGEEA 378

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLA 412
           LI  +        +     +  ++R     +     L             D    +LR A
Sbjct: 379 LIEAVLKT-CGASEAQGLVVALNQRQQDLAATAAIALARTQEAAAQKLPWDFWTIDLRQA 437

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             SLG+ITG    E +LD IFS+FCIGK
Sbjct: 438 ISSLGEITGEEITEAVLDRIFSRFCIGK 465


>gi|117927030|ref|YP_867647.1| tRNA modification GTPase TrmE [Magnetococcus sp. MC-1]
 gi|205415778|sp|A0LE48|MNME_MAGSM RecName: Full=tRNA modification GTPase mnmE
 gi|117610786|gb|ABK46241.1| tRNA modification GTPase trmE [Magnetococcus sp. MC-1]
          Length = 468

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 153/465 (32%), Positives = 239/465 (51%), Gaps = 27/465 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPF-------PRKASLRY 52
           + HE++ I  ++T    S ++++RLSGP     V  ++   K          PR      
Sbjct: 6   LLHEQDCIIGMATPPGTSGVAVLRLSGPGVLSLVVPYLYTPKGEKVAESGFKPRVMRRLN 65

Query: 53  FFGLDGR--ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANP 110
           F         LD  L++ FP+P SF+GED  E H HG   VV  I+E L     +R A+P
Sbjct: 66  FIDPQAPDVPLDHMLVVHFPNPHSFSGEDMVELHGHGAPVVVKRIMEVLV-AHGVRPADP 124

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           GEFS+RAF N K+DL++AE+L  LI + +    R +   M+G LS       D L    +
Sbjct: 125 GEFSKRAFFNNKMDLVQAEALMGLIEATSLRAAREASRQMTGTLSEHLMALKDHLVLTYA 184

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            +EA LDFS+ ED++  S   +L+ + ++   I   +   +LG  +R+G+++ I+G  N 
Sbjct: 185 HLEAALDFSD-EDIEPESEGGLLDRLAYVHAGIKKMLGTAELGRQMRDGFELAIVGRPNV 243

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSLFNAL+ +D AIVTD+ GTTRD+   +L++ G  + + DTAG+RE+DD VE+ GI+
Sbjct: 244 GKSSLFNALSGEDRAIVTDLAGTTRDLNESNLEIHGLPILLVDTAGLRESDDPVERIGIE 303

Query: 291 RTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSD--------LYSTYT 336
           R +  VE AD I+ + E         K  +        +++  K D            + 
Sbjct: 304 RAWQRVERADGIVFVAEAQLGVTLEDKALLQRLPKEKALWVWNKLDQLEGALPECLQDWP 363

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-L 395
           EE    +S  TGEGLE ++  I + +    +     +    R    L Q +  +E A  +
Sbjct: 364 EEQICGVSCHTGEGLESVVAHIVARMEQLPEHGEGVVIMQLRQQQTLQQAIVLIEEAQEM 423

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 L+++AE L  +   L ++ G  D E +L ++FS FC+GK
Sbjct: 424 LANGQWLELVAEPLTRSIDQLTQLMGNTDYEDVLGMVFSSFCVGK 468


>gi|239618515|ref|YP_002941837.1| tRNA modification GTPase TrmE [Kosmotoga olearia TBF 19.5.1]
 gi|239507346|gb|ACR80833.1| tRNA modification GTPase TrmE [Kosmotoga olearia TBF 19.5.1]
          Length = 440

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 141/443 (31%), Positives = 237/443 (53%), Gaps = 12/443 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            + I A++T    SA+ IIR SG   ++          P P +  L  F  ++G ++D+ 
Sbjct: 3   HDPICAIATSPGISALGIIRCSGEGSWEKLLPFVNVTDPKPWRLYLTPFT-INGEMIDEV 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++  + SP+S+TGED  E   HG   ++  IL+EL K+   R A PGEF++RA  NGK+D
Sbjct: 62  MIAFYKSPKSYTGEDMVELISHGSPLILRIILQELIKV-GFRQALPGEFTKRAVLNGKMD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++AES+  L+S+ ++   + ++   SG LS    +  + L  + + +E +L++    D 
Sbjct: 121 LIKAESIETLVSAHSKKALKAALSNYSGRLSQTINRIRETLLELLAKVEVELNYP---DE 177

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              S  E++ ++    + +   I  G+ G +  NG K VI G +N GKS+L NAL ++D 
Sbjct: 178 IEGSDDEIIRELEKTLSRVKKLIRHGENGIVAVNGVKTVIAGRTNVGKSTLLNALLRRDR 237

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRD +  D+ + G   ++ DTAGIRE+ D VE+ GI+R+  +++ ADL+L 
Sbjct: 238 AIVTDIPGTTRDTIEEDISINGIYFRLVDTAGIRESSDKVERIGIERSLKQIKEADLVLF 297

Query: 305 LKEINSKK------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           + ++   +      E    +    I IG K D+     + +D  IS+ TG G+++L N +
Sbjct: 298 MVDLIEPENDLELYEKLRKEFRHSILIGNKLDMVEKCPDGFDVCISAKTGRGIDKLENLM 357

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLG 417
                +  +  P  +   +R L  + ++V  + E+    +     D++   L+       
Sbjct: 358 VERTQDITELYPDEVFVTERQLALVQRSVEMIEEILEALKSGITPDVVGSYLQQIIFIYD 417

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           ++TG    E LLD IF  FC+GK
Sbjct: 418 ELTGRYSAEDLLDKIFGNFCVGK 440


>gi|123967744|ref|YP_001008602.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. AS9601]
 gi|166234808|sp|A2BNY4|MNME_PROMS RecName: Full=tRNA modification GTPase mnmE
 gi|123197854|gb|ABM69495.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus str. AS9601]
          Length = 460

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 163/444 (36%), Positives = 236/444 (53%), Gaps = 23/444 (5%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRILDKGLLIVFP 70
               ++IIR+SG      C+ I + K  +  + S R F G        + +D+ L++V  
Sbjct: 21  GKGGVAIIRVSGKDAINSCKKIVQTKSKYAWE-SHRVFRGFIQENKQNKFIDEVLILVMK 79

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-LRLANPGEFSRRAFENGKIDLLEAE 129
           SP SFTGED  E H HGGI +VN +L+ L    + +RLANPGEFS+RAF NGKIDL +AE
Sbjct: 80  SPNSFTGEDVVELHCHGGIIIVNKVLKILLSNNSRVRLANPGEFSQRAFLNGKIDLTQAE 139

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           S+  LI++       L+  G+ GE+        + L +    IEA +DF E  D  +F  
Sbjct: 140 SINQLINASNARSAELAFSGVQGEIKKKIDDIKNDLINQLCEIEARVDFEE--DFTDFDY 197

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            + L +I  +K  I   I   K    I NG  I ++G +N GKSSL N LAKK+ AIVT+
Sbjct: 198 TKYLKNIKKVKEKIELLIENAKRNSYIHNGISIALIGKTNVGKSSLLNLLAKKEKAIVTN 257

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI- 308
           IPGTTRDV+ ++L +    +KI DTAGIRET + +E  GIK++F +++ +D I+ +  + 
Sbjct: 258 IPGTTRDVIEVNLTINDIPMKIIDTAGIRETHEQIESIGIKKSFGKIKESDFIIYIYSLE 317

Query: 309 ------NSKKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFTGEGLEELINK 357
                 + K     PK      +G K DL       +   ++  L+S    +G   LI+ 
Sbjct: 318 EGFNEEDKKIIQEIPKEKLITILGNKKDLIDCKNINSNELKHTILMSIKNNDGERLLIDT 377

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSL 416
           I        +    +I  + RHL +LS  +  L +   + E     D+++  LR    +L
Sbjct: 378 IIKK-CGLKQVENINIFLNDRHLTNLSACLSNLNDTDEIIENKLPFDLLSIELRDGIQNL 436

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            KITG    E+LLD IFSKFCIGK
Sbjct: 437 SKITGQELTEELLDNIFSKFCIGK 460


>gi|71275539|ref|ZP_00651825.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Xylella fastidiosa Dixon]
 gi|71902449|ref|ZP_00684393.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Xylella fastidiosa Ann-1]
 gi|170731351|ref|YP_001776784.1| tRNA modification GTPase TrmE [Xylella fastidiosa M12]
 gi|71163839|gb|EAO13555.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Xylella fastidiosa Dixon]
 gi|71727824|gb|EAO30073.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [Xylella fastidiosa Ann-1]
 gi|167966144|gb|ACA13154.1| thiophene and furan oxidation protein [Xylella fastidiosa M12]
          Length = 451

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 142/431 (32%), Positives = 224/431 (51%), Gaps = 13/431 (3%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           I IIR+SG     +   +       PR A    F  +D +++D GL I FP+P SFTGED
Sbjct: 24  IGIIRISGSQIKTIATGL-GMTTLRPRYAHYTRFLDVDDQVIDDGLAIWFPAPHSFTGED 82

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HG   ++  +L     +   R A PGEFS RAF NGK+DL++AE++AD+I +  
Sbjct: 83  VLELQGHGSPLLLRQLLTRCLDL-GARQARPGEFSERAFLNGKLDLIQAEAIADMIGAAD 141

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
               R +   + G  S        +L  +R  +EA +DF++ E +      ++   +  L
Sbjct: 142 LRAARAARRSLDGVFSRRCEALAQQLVRLRIHVEATIDFAD-ESLDTLDRAQIRTSLQTL 200

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             +++  +   + G+ + +G   V++G  N GKSSL NAL   D AIVTD+PGTTRD L 
Sbjct: 201 NVELTQLLRDAEHGKRLCDGLYTVLVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLR 260

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             +   G    + DTAG+RE  D +E+EG++RT  E++ ADL L++ +    +  S    
Sbjct: 261 ESVHFHGLEFVLVDTAGLREEGDAIEREGMRRTLNELQRADLALVVLDACDPQIGSLALA 320

Query: 320 ------IDFIFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELINKIKSILSNKF-KKL 369
                    ++I  K DL +      D     +S+ TG GL+ L  +++++L  +  + +
Sbjct: 321 DALTSVPRVLWIHNKLDLLTEPPSALDTDVIPVSAMTGAGLDTLKTRLRTLLLGETVETI 380

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLL 429
                +  RH+  L +T  ++  A+       L++ AE LRLA  +LG+I G +  ++LL
Sbjct: 381 EGEFSARLRHVQALQRTAAHVTDANAQFAYEHLELTAEELRLAYKALGEINGSMSPDELL 440

Query: 430 DIIFSKFCIGK 440
             IFS FCIGK
Sbjct: 441 GRIFSNFCIGK 451


>gi|329891179|ref|ZP_08269522.1| tRNA modification GTPase TrmE [Brevundimonas diminuta ATCC 11568]
 gi|328846480|gb|EGF96044.1| tRNA modification GTPase TrmE [Brevundimonas diminuta ATCC 11568]
          Length = 437

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 169/442 (38%), Positives = 261/442 (59%), Gaps = 12/442 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TIFA++T     AI+++RLSGP+       +       PR AS+R     + R++D+ 
Sbjct: 2   SDTIFALATPPGRGAIAVLRLSGPATETTLTALGAGGL-TPRLASVRSLRHEE-RLIDEA 59

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F +P S+TGEDSAE H+HGG AVV      L  +  LR A PGEF+RRAF+NG++D
Sbjct: 60  LVLRFIAPRSYTGEDSAELHLHGGRAVVEAASAALIAL-GLRPAEPGEFTRRAFQNGRMD 118

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI +ET+ Q+  ++  + G LS+ Y  +   L    S +EA++DF + E+V
Sbjct: 119 LAQAEAVADLIDAETDAQKSQALGQLDGALSAAYAGFRRDLLKALSLVEAEIDFPD-EEV 177

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +  ++     +  L  D+ + ++    G  +R GY+IV++G +NAGKSSLFNAL  ++ 
Sbjct: 178 PDNLARTAGPILDALAADLRAALADSDRGRRVREGYRIVLIGETNAGKSSLFNALVAREA 237

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT I GTTRDVL  D+ + GY V +SDTAG+R++DD VE EGI+R  L  E ADL L 
Sbjct: 238 AIVTPIAGTTRDVLDADIMIGGYAVTLSDTAGLRDSDDPVEAEGIRRARLRAEGADLRLW 297

Query: 305 L----KEINSKKEISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLEELINKI 358
           +     E ++     F ++ D   +  KSDL   +T  +     +S+ TG+GL EL + I
Sbjct: 298 VRSPSTEGDTDPAFGFIRSSDLQ-VLNKSDLGAVATAPDLEALSVSTTTGQGLSELHDWI 356

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
            + L+       F   + +RH   L++ +  +E       D   ++  ++LR A+ +L +
Sbjct: 357 AARLARDLSGADFPAVTRERHRRRLAEALAAVEAGRRAL-DLAPEMAGDDLRRAADALAR 415

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           +TG + VE +L  +FS FCIGK
Sbjct: 416 VTGAIGVEDILGEVFSSFCIGK 437


>gi|322789734|gb|EFZ14900.1| hypothetical protein SINV_07474 [Solenopsis invicta]
          Length = 458

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 164/459 (35%), Positives = 244/459 (53%), Gaps = 33/459 (7%)

Query: 14  GALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDKGLLIVFPSP 72
           G     ++++R+SG    +  + +    K  PR+A LR       G ++D GL + FP P
Sbjct: 1   GHGKCGVAVVRISGSRSLEALKRMTSISKLEPRRAFLRKIRDPKTGEVIDNGLCLWFPGP 60

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
            SFTGEDS EFHVHGG A++  +++ L+K+  ++ A PGEF+RRAF N K+DL E E LA
Sbjct: 61  YSFTGEDSVEFHVHGGSAILTRLMQVLSKLQ-VQPALPGEFTRRAFYNNKLDLTEVEGLA 119

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           DLI +ETE QR+ ++    G L  LY  W   L+   + IEA +DF EE+++++   +  
Sbjct: 120 DLIEAETECQRKQALLQADGILRKLYDNWRKVLSESVASIEAYIDFGEEDNIESDVVQNA 179

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
            + +  L  D+  H++ G+ GEI+RNG + VI+G  N GKSSL N L +++ AIVT I G
Sbjct: 180 HHALRQLMRDLEEHLADGRRGEILRNGVRTVIVGEPNVGKSSLLNHLVQRNAAIVTPIAG 239

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVENA------------ 299
           TTRDV+ +  ++ GY V I+DTAGI  +T DIVE EG++R     ENA            
Sbjct: 240 TTRDVIELTANISGYPVLIADTAGITDDTGDIVEAEGVRRARRHAENADFVVVVVDAFKC 299

Query: 300 --------DLI-LLLKEINSKKEISFPKNIDFIFIGTKSDLYST-----YTEEYDHLISS 345
                   D I   L  +   + ++      ++ I  K DL        +++    L S 
Sbjct: 300 ASSGMMYEDYIREYLSSLGILELLTKIGRERYVVIANKKDLLKEEEKRCFSDTEAILTSC 359

Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL--NEKDCG 401
            T +G ++L+  +                  S  RH  HL+Q +R+L+        +   
Sbjct: 360 RTEDGFQDLLRSLTDRFSKICGNPSAESPTISQARHRNHLAQCLRHLQSYFELCANEQHD 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + I AE +  A   LG+ITG V   ++LDIIF  FCIGK
Sbjct: 420 MAIAAEEIHKAMRELGRITGHVSTNEILDIIFKNFCIGK 458


>gi|157412546|ref|YP_001483412.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9215]
 gi|166991113|sp|A8G2J5|MNME_PROM2 RecName: Full=tRNA modification GTPase mnmE
 gi|157387121|gb|ABV49826.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus str. MIT 9215]
          Length = 460

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 163/444 (36%), Positives = 236/444 (53%), Gaps = 23/444 (5%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRILDKGLLIVFP 70
               ++IIR+SG      C+ I + K  +  + S R F G        + +D+ L+ V  
Sbjct: 21  GKGGVAIIRVSGKDSINSCKKIVQTKSKYAWE-SHRVFHGFIQENKQNKFIDEVLISVMK 79

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-LRLANPGEFSRRAFENGKIDLLEAE 129
           SP SFTGED  E H HGGI +VN +L+ L    + +RLANPGEFS+RAF NGKIDL +AE
Sbjct: 80  SPNSFTGEDVVELHCHGGIIIVNKVLKILLSSNSRVRLANPGEFSQRAFLNGKIDLTQAE 139

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           S+  LI++       L+  G+ GE+        + L +    IEA +DF E  D  +F  
Sbjct: 140 SINQLINASNTRSAELAFSGIQGEIKKKINDIKNDLINQLCEIEARVDFEE--DFTDFDY 197

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            + L +I  +K  I   I   K    I NG  I ++G +N GKSSL N LAKK+ AIVT+
Sbjct: 198 TKYLKNIKKVKEKIELLIENAKRNSYIHNGISIALIGKTNVGKSSLLNLLAKKEKAIVTN 257

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI- 308
           IPGTTRDV+ I+L +    +KI DTAGIRET + +E+ GIK++F +++ +D I+ +  + 
Sbjct: 258 IPGTTRDVIEINLTINDIPMKIIDTAGIRETSEQIERIGIKKSFRKIKESDFIIYIYSLE 317

Query: 309 ------NSKKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFTGEGLEELINK 357
                 + K     PK      +G K DL       +   +   L+S    +G   LI+ 
Sbjct: 318 EGFNEEDKKIIQEIPKEKLITILGNKKDLIDCKNINSNELKNTILMSIKNNDGERLLIDT 377

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSL 416
           I        +    +I  ++RHL +LS  +  L +   + +     D+++  LR    +L
Sbjct: 378 IIKK-CGLKQVENINIFLNERHLANLSACLSNLNDTDEIIKNKLPFDLLSIELRDGIQNL 436

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            KITG    E+LLD IFSKFCIGK
Sbjct: 437 SKITGQELTEELLDNIFSKFCIGK 460


>gi|307110642|gb|EFN58878.1| hypothetical protein CHLNCDRAFT_19706 [Chlorella variabilis]
          Length = 477

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 136/480 (28%), Positives = 224/480 (46%), Gaps = 49/480 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA------------------ 48
           TI A+ TGA   A+SIIR+SG     + + +        R A                  
Sbjct: 1   TIAAIVTGAAQGAVSIIRVSGADAVAIAQQVFAPYSAQRRHAAAAGPAARQAPAAGHPDP 60

Query: 49  ----------SLRYFF----GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNG 94
                     S R ++       G +LD+ LL+   +P S+T ED  E H HGG      
Sbjct: 61  ATHAAAWQPESHRVYYGTAIDAGGTVLDEVLLLTMLAPRSYTAEDVVEVHTHGGGVSAAR 120

Query: 95  ILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL 154
           +L+   +    RLA PGEF+ RAF NG++DL +AES+A LI + T      ++ G+SG L
Sbjct: 121 VLQRCLEA-GARLAQPGEFTLRAFLNGRLDLSQAESVAQLIDARTVAAADSALAGLSGGL 179

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
                +   +   +   ++A LDF E  D+       +++ I  L   + + +   + G+
Sbjct: 180 GREVQRMRRECVDLLVEMDARLDFDE--DLPPLDVPGLIDRIRRLSQQLEATLQTARHGQ 237

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++R G ++ ++G  N GKSSL NAL+  + AIVT I GTTRD++   + + G  + + DT
Sbjct: 238 LLRTGLQVALVGRPNVGKSSLLNALSGTERAIVTHIAGTTRDIVEAGVVIGGIPITLLDT 297

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKNIDFIFIGTKS 329
           AG+RE+ D+VE+ G++R+      AD++L++ +  +       EI+             S
Sbjct: 298 AGLRESVDLVEQIGVERSMAAARQADIVLMVLDAQAGWTPGDAEIAAQITPAAAGADASS 357

Query: 330 DLYSTYTEE-------YDHLISSFTGEGLEELINKIKSILSN-KFKKLPFSIPSHKRHLY 381
                                S+ T EGL++L   + S+    +      S   ++R   
Sbjct: 358 AARQLGVPPAVGSRFAAVVSTSAATREGLQDLQQAVLSLAGAPQLAPGGISWAVNERQGE 417

Query: 382 HLSQTVRYLEMAS-LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L +    L+        +  +D    +LR A ++LG+++G    E++LD IFS+FCIGK
Sbjct: 418 ALIRASEALQRVQGSIADELPVDFWTIDLRAAVLALGEVSGEDVTEEVLDSIFSRFCIGK 477


>gi|325478822|gb|EGC81932.1| tRNA modification GTPase TrmE [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 455

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 143/457 (31%), Positives = 233/457 (50%), Gaps = 23/457 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-------RKASLRYFFGL 56
           E+ TI A+ST +    ISI+R+SG   +++ + I +             RK       GL
Sbjct: 2   EERTIAAISTPSGTGGISIVRMSGNKSYEIIKEIFRPIAGKEIDRDEDNRKMRYGNIIGL 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           DG I+D+ ++     P ++T ED  E + HG    V  IL  L       LA  GEF++R
Sbjct: 62  DGEIIDEVMVCFMKGPYTYTREDICEINCHGSFVSVKKILN-LLLDKRCDLAEGGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++ D+I++  E+ ++  +  ++G L          L    S +E  +
Sbjct: 121 AFLNGRIDLSQAEAVLDIINATNELSQKEGVNQLNGALREKINDIRKSLLEALSRLEYSI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +F+E  D ++ S  E++  +   K+ I   +S    G+I+R+G    I+G  N GKSSL 
Sbjct: 181 NFTE--DGEDLSPDEIIKYMDDAKSMIDRLLSTSNKGKILRDGINTTIIGKPNVGKSSLL 238

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  ++ AIVTDIPGTTRD++T  +    + +K++DTAGIR+T+D+VEK G+ ++   V
Sbjct: 239 NNLLNENRAIVTDIPGTTRDLITEYISFGDFTLKVNDTAGIRDTEDLVEKIGVDKSIELV 298

Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY------TEEYDHLIS 344
           + +DLI+ + + +       KK +S     + I I  K DL   +      +E      S
Sbjct: 299 DKSDLIIAIFDTSRDFDEEDKKILSLINGKNAIIILNKLDLSPKFDESKLGSEHKIVKTS 358

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLD 403
               EG++ L   I  +   K  K    + ++ RH   L +    L E  +  ++   LD
Sbjct: 359 MTNEEGIDLLEAAITEMFDTKDLKRESVLITNTRHERLLKEASLKLNESLTDIKRGIPLD 418

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +LR A   LG I G    ++++D +F +FC+GK
Sbjct: 419 ACEVDLRGAYDDLGLIIGESVSDEIMDKVFKEFCVGK 455


>gi|228470917|ref|ZP_04055762.1| tRNA modification GTPase TrmE [Porphyromonas uenonis 60-3]
 gi|228307314|gb|EEK16328.1| tRNA modification GTPase TrmE [Porphyromonas uenonis 60-3]
          Length = 470

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 150/474 (31%), Positives = 239/474 (50%), Gaps = 38/474 (8%)

Query: 1   MNHE-KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           M H+  ETI A +T      +++IR+SG    Q+ E +  K+   PR+A+      +DG+
Sbjct: 1   MIHDLSETICAPATALG-GGLAVIRISGSLVPQIAETLLGKRL-APREAT-TAGLRIDGQ 57

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D  +   F +P S+TGE+  E   H    +V  ILE +A     R+A+PGEF+RRA  
Sbjct: 58  LIDLVVATYFAAPHSYTGEEVVELSCHASPFIVRSILEWIAHQKGCRMADPGEFTRRALA 117

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           +GK+DL EAE++ADLI++ T  Q +++ME  +G LS L  +    L      +E +LDFS
Sbjct: 118 HGKLDLAEAEAVADLIAATTATQHKMAMEQHTGRLSHLLNELRATLLRFAGLLELELDFS 177

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV       +   +  +++ +         G+ ++ G    I+G  N GKSSL NAL
Sbjct: 178 E-EDVAFADRTTLAETLATIQHQLRLLTQSFSTGQELQQGIPTAIIGAPNVGKSSLLNAL 236

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            + + AIV+DIPGTTRD +   L + G L ++ DTAG+R+T D+VE+ GI+R++ ++ +A
Sbjct: 237 LQHERAIVSDIPGTTRDTVEGRLTIRGTLFRLIDTAGLRQTTDLVEQLGIERSYQQISSA 296

Query: 300 DLILLLK--------EINSKKEISFP---KNIDFIFIGTKSDLY--STYTEEYDHL---- 342
            LIL +         E+ ++     P    +   I +  K DL      T+   H     
Sbjct: 297 RLILWVIAPPLPTWDELETQLGELLPLTSPDSTLILLLNKRDLLTEREVTDWLSHCSDQL 356

Query: 343 --------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
                         IS+   +G+E L   + +            +  + RH   L++   
Sbjct: 357 QRITDKRHTTPPLAISARAAQGIEALEELMVTNTHTLHSNEETVMLYNLRHYEALTKASH 416

Query: 389 YLEMASLNEKD-CGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
            LE+ S    +    D+I   LR A   +G +TG  +  +++L  IFS FCIGK
Sbjct: 417 ALELVSEGLHNGLTSDLITPYLREAIEEIGLVTGASITSDEVLGYIFSHFCIGK 470


>gi|212704371|ref|ZP_03312499.1| hypothetical protein DESPIG_02426 [Desulfovibrio piger ATCC 29098]
 gi|212672196|gb|EEB32679.1| hypothetical protein DESPIG_02426 [Desulfovibrio piger ATCC 29098]
          Length = 465

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 138/465 (29%), Positives = 229/465 (49%), Gaps = 33/465 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----PRKASLRYFFGLDGRIL 61
           TI A++T      I I+R+SGP   ++   +            P           +G  L
Sbjct: 3   TIAAIATAPGAGGIGIVRISGPQSREILSRMFSPASAKFSGFRPWVLHRGRALDHEGAPL 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  L +  P P +FTGED AE H HGG  +V  ILE   ++   R A  GEFSRRAF NG
Sbjct: 63  DDVLAVFMPGPRTFTGEDVAEIHCHGGPFIVQAILETALRL-GARAAERGEFSRRAFVNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++A+LI++ +    R S+  + G L         +L  +R  +   +DF + 
Sbjct: 122 RMDLSQAEAVAELIAAPSREALRYSLNRLDGLLGRKVTALRQRLEELRVQMSLAVDFPD- 180

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E+V+  + +     +  +   +   ++  +  ++++ G  +V+ G  NAGKSSL NAL  
Sbjct: 181 EEVECLAPEAFAAVVEEVAAAVRGLLTGQRRAQVMQQGAVVVLAGAVNAGKSSLLNALLG 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ A+VTDIPGTTRD L     L+G  V+++DTAG+RETD+ VE+ G+  +  +V  AD 
Sbjct: 241 RNRALVTDIPGTTRDFLEESCQLDGLPVRLTDTAGLRETDESVEEMGVALSRQKVRQADA 300

Query: 302 ILLLKEINS----------------KKEISFPKNIDFIFIGTKSDLY--STYTEEYDH-- 341
           ILLL +                   ++ +    +I  + +  K DL   + +   + H  
Sbjct: 301 ILLLVDGGRLGPAGAAADICPDEAVREVLEQAGDIPVLLVWNKVDLAEPAVWPPAWGHGR 360

Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVRYLEMASLN 396
               IS+ TG  ++ L  +++++L +     P    +  + R    L + +  L+    +
Sbjct: 361 PCVRISASTGHNVDTLARRLRALLLDDGSHTPPSDGLAPNARQSLVLERALHELDALLAD 420

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                  D  +  L  A+  LG++TG    E++L+ +FS FCIGK
Sbjct: 421 IAAGSPYDCCSVRLDAAAALLGEVTGLDSPEEVLNRVFSSFCIGK 465


>gi|89067424|ref|ZP_01154937.1| tRNA modification GTPase [Oceanicola granulosus HTCC2516]
 gi|89046993|gb|EAR53047.1| tRNA modification GTPase [Oceanicola granulosus HTCC2516]
          Length = 422

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 149/437 (34%), Positives = 239/437 (54%), Gaps = 18/437 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    + ++++RLSGP      E +        R  +LR         LD+ L
Sbjct: 2   DTIFALASARGRAGVAVVRLSGPQARAAVERLAGPLPEDGR--TLRKLRDGADE-LDEAL 58

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++VFP   SFTGE+  E H+HG +AV++ +L+ L +   LR+A  GEF+ RAF NG++DL
Sbjct: 59  VLVFPEGRSFTGEEVVELHLHGSLAVISAVLQRLGQDRRLRMAAAGEFTNRAFVNGRLDL 118

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE+QR+ ++  + G L      W  +L    + +EA +DF++ EDV 
Sbjct: 119 AQVEGLADLIDAETEVQRKQAVRALDGALGRKAELWRAQLIRAVALVEATIDFAD-EDVP 177

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV   +  ++ D++S      + E +R G+++ ILG  N GKS+L NALA ++ A
Sbjct: 178 EDVSAEVAELVEGVRTDLASEARGVGIAERVRAGFEVAILGAPNVGKSTLLNALAGREAA 237

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +++ GTTRDV+ + ++L G  V + DTAG+RE  D VE+ G++R     E ADL + L
Sbjct: 238 ITSEVAGTTRDVIEVRMELAGLPVTVLDTAGLREATDQVERIGVERALARAEQADLRVHL 297

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            +           +   I +  K+DL           +S  TG G+++L+ ++   LS +
Sbjct: 298 VDGGQSPANVRADD---IVVQAKADLRGE-------GVSGLTGAGVDKLVAELGQRLSAR 347

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCV 423
                 ++   +RH   + +    L      +   +   D++AE LR A  ++  + G V
Sbjct: 348 V--PDGAVAVRERHRLAMERAAEGLASVVRQITLLEEMPDLLAEELRGAIRAIDSLVGRV 405

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVEQ+L  IFS FCIGK
Sbjct: 406 DVEQVLGEIFSSFCIGK 422


>gi|220905227|ref|YP_002480539.1| tRNA modification GTPase TrmE [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869526|gb|ACL49861.1| tRNA modification GTPase TrmE [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 468

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 222/469 (47%), Gaps = 33/469 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----PRKASLRYFFGLD 57
              +TI A++T      + I+R+SGP   Q    +     P      P           +
Sbjct: 2   STNDTIAAIATPPGSGGVGIVRISGPEAKQTLARMFLPLSPKFENFRPWFLHRGRVVDWN 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  LD  L +  P P SFTGED AE H HGG  +V  +LE   ++   R A  GEFSRRA
Sbjct: 62  GENLDDVLAVFMPGPRSFTGEDVAEIHCHGGPFIVQSVLEAALRL-GARQAQQGEFSRRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE++A+LI++ +    R  +  + G L+        +L  +R  +   +D
Sbjct: 121 FINGRMDLSQAEAVAELIAAPSREALRYGLNRLDGLLARRTETLRRELEDLRMQVCVAVD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E+E V+   +      +  + + +   +   +   +++ G  +V+ G  NAGKSSL N
Sbjct: 181 FPEDE-VEGMDAPTFSAAVEKVASALRHLLQGSRRARVMQQGAVVVLAGAVNAGKSSLMN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  ++ A+VTDIPGTTRD L    DL G  V+++DTAG+R+  + +E+ G++R+  ++ 
Sbjct: 240 ALLGRNRALVTDIPGTTRDFLEEACDLGGLPVRLTDTAGLRKAAESIEEMGVERSRQKLA 299

Query: 298 NADLILLLKEIN----------------SKKEISFPKNIDFIFIGTKSDL--YSTYTEEY 339
            AD ++L+ +                  +++ +        + +  K DL   S +   +
Sbjct: 300 EADAVVLVLDGGVLGEAGAAAATCPDPAAREVLELAGATPVLVVWNKCDLCTPSVFPPRW 359

Query: 340 DHLI-----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
                    S+F+   +E++   ++++L                    ++      E+A+
Sbjct: 360 IQGQTCCTTSAFSDTQVEDMAESLRALLLAGGGGAAAEEGLAPNARQSMALEAALAELAA 419

Query: 395 LNE---KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L E        D  A  L +A+  L ++TG     ++LD +FS+FCIGK
Sbjct: 420 LREDVDAGRSYDCCAVRLDVAAAHLAEVTGLSSPAEVLDRVFSQFCIGK 468


>gi|260942413|ref|XP_002615505.1| hypothetical protein CLUG_04387 [Clavispora lusitaniae ATCC 42720]
 gi|238850795|gb|EEQ40259.1| hypothetical protein CLUG_04387 [Clavispora lusitaniae ATCC 42720]
          Length = 492

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 152/467 (32%), Positives = 249/467 (53%), Gaps = 34/467 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGRILDKGL 65
           TIFA+ST    +AI +IR+SGP    V   + K KK P P++ S+R  FG +G +LD+ L
Sbjct: 27  TIFALSTRPGRAAIGVIRVSGPKAQYVYHQLTKSKKPPLPQRTSVRRIFGSNG-MLDEAL 85

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFSRRAFE 119
            + F  P+++TGED  E HVHGG A++  +L  + ++ +      +R+A  GEFSRRAF 
Sbjct: 86  TVFFRGPKTYTGEDLLELHVHGGNAIIKAVLGAIQELHDPENGTEIRMAQQGEFSRRAFM 145

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           +G++DL E E + ++I ++TE QR  ++  ++GE   ++ +W +++    + +   +DF 
Sbjct: 146 SGRLDLTEIEGIREMIDADTESQRLSALASLTGENKQVFARWREEIVRNMALLTTVIDFG 205

Query: 180 EEEDVQN--FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           EE D++        V   I  L  +I S++ + +  +I+  G K+ +LG  NAGKSSL N
Sbjct: 206 EEHDLEETKELFSTVEKSIDSLITEIESYLRKVRGSDILLRGIKVCLLGPPNAGKSSLLN 265

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKRTFLE 295
            LA  D AIV+ I GTTRD+L + LD+ G+ V + D+AGIR  E  D +E+EGI+R    
Sbjct: 266 YLANNDTAIVSHIAGTTRDILDVPLDIGGFKVVVGDSAGIRSLEKADTIEQEGIRRAKQR 325

Query: 296 VENADLILLLKEINSKKEISFPKNIDF--------IFIGTKSDLYST-----------YT 336
               D+++ +  +N        +++D         + +  K+DL                
Sbjct: 326 SLVGDVVVAVLPVNEPLSPDLKEHMDLLRKEQKPTVVVLNKADLVEKVDKTAFTQALQVK 385

Query: 337 EEYDHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRY-LEMAS 394
            E  H++S   G+G++ L   + +        +    +    R    L   V Y L+   
Sbjct: 386 PENVHVVSCLNGQGMDSLREALVAHFKVASMSETSDPVVISARAQDLLEHDVLYGLKQFK 445

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
           + +    + +  E LR +   +GKITG  V VE++L ++FS FCIGK
Sbjct: 446 VWKDSEDVVLAEECLRQSVEGIGKITGDAVGVEEILGVVFSSFCIGK 492


>gi|329908683|ref|ZP_08274923.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546633|gb|EGF31597.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 433

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 154/434 (35%), Positives = 228/434 (52%), Gaps = 22/434 (5%)

Query: 27  GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVH 86
           G    ++C  +   K    R+A+   F   DG  +D+GL + F +P S+TGED  E   H
Sbjct: 2   GNIAAEIC-AMLPGKTLQARRATYTRFVDADGSTIDQGLALYFKAPHSYTGEDVLELQGH 60

Query: 87  GGIAVVNGILEELAK---MPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143
           GG  V+  +L    +     +LRLA PGEF++RAF N K+DL +AE++ADLI + TE   
Sbjct: 61  GGPVVMQLLLARCLQAGSHIDLRLAQPGEFTQRAFLNDKLDLAQAEAVADLIDASTEAAA 120

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
           R + + +SG  S +    ++++TH+R  +EA LDF E E++      +    +  +++ +
Sbjct: 121 RSASQSLSGVFSGIIRTLVEQVTHLRMLVEATLDFPE-EEIDFLEKSDARGKLAAIRDTL 179

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
                Q   G ++R+G  IV+ G  N GKSSL NALA  D+AIVT I GTTRD +T  + 
Sbjct: 180 QKVFRQSAQGALLRDGLNIVLAGQPNVGKSSLLNALAGADIAIVTPIAGTTRDKVTETIQ 239

Query: 264 LEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKE-------INSKKE 313
           +EG  + I DTAGIR   E  D VE+ GI+RT+  V  AD+I+ L +        +    
Sbjct: 240 IEGIPLNIIDTAGIRYDAEAIDDVERIGIERTWAAVAQADVIIHLLDACRGPTLADESIV 299

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTE-----EYDHLISSFTGEGLEELINKIKSILSNKFKK 368
             FP NI  + +  K DL           +  H+  S T +   EL+ +    L+   + 
Sbjct: 300 ARFPANIPVMRVWNKIDLSGHKPAIDRLVDATHIYLSATDQLGMELLREELLRLAGWQQT 359

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
                 + +RHL  L+    +L+ A+      D  LD+ AE LRLA   L  ITG    +
Sbjct: 360 GESLYLARERHLVALAAAQTHLQFAAEHAALNDHALDLFAEELRLAQEQLSSITGAFTSD 419

Query: 427 QLLDIIFSKFCIGK 440
            LL +IFS+FCIGK
Sbjct: 420 DLLGVIFSRFCIGK 433


>gi|269115231|ref|YP_003302994.1| tRNA modification GTPase [Mycoplasma hominis]
 gi|268322856|emb|CAX37591.1| tRNA modification GTPase [Mycoplasma hominis ATCC 23114]
          Length = 448

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 237/448 (52%), Gaps = 11/448 (2%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-LDGRI 60
           N+ ++TI A+S+G +  AISIIRLSG    ++ + +   K    +  +       + G+I
Sbjct: 3   NNIQDTIVAISSGNVNQAISIIRLSGEDSIEIVKKVFSGKVGKDKTITYGNIIDNITGKI 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+  F   +++TGE++ E + HGGI V N IL  L      RLAN GEF+RRAF N
Sbjct: 63  VDEVLVNWFIGNKNYTGENTVEINAHGGIVVTNKILNLLI-ANGARLANRGEFTRRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKI L +AE++  LI ++T  Q  +++   + + + +    I++L  I S IE ++D+S+
Sbjct: 122 GKISLDKAEAINSLIHAKTNKQAEIAISQFNSKDNLIIENLINELLTIISLIEINIDYSD 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D++   +  + + +      + S I++ +    I  G  + I+G  N GKSSL N+L 
Sbjct: 182 YNDIKEMDANTLTSQLSKFNRKLDSIINKSENACDIYKGINVAIVGRPNTGKSSLLNSLI 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
               AIVT+IPGTTRDV+  +  + G+L  + DTAGIR+T D+VE  GI+R+   ++ A 
Sbjct: 242 GSQKAIVTNIPGTTRDVVEGEFQINGFLFNLIDTAGIRQTKDLVESIGIERSKNAIKEAK 301

Query: 301 LILLLKEI----NSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           +++ + E     N + +I     K   +I +  K DL +      + ++ S     L EL
Sbjct: 302 IVIHMHEPFIKENEEDQIIKELSKGKVYIPVMNKQDLLNKDQYPKNMVLISSKENSLWEL 361

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDIIAENLRLAS 413
            N +     N     P  I  + R L  L Q    +  A  +  +  G +++  ++  A 
Sbjct: 362 KNALVKNYLNIDLDDPQ-IIFNNRKLSLLKQAKISINTALESLSQGLGPEVVILDINEAW 420

Query: 414 VSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
            SL +I     D E LLD IFSKFC+GK
Sbjct: 421 GSLSEILNKKHDNEALLDNIFSKFCLGK 448


>gi|225873776|ref|YP_002755235.1| tRNA modification GTPase TrmE [Acidobacterium capsulatum ATCC
           51196]
 gi|225794461|gb|ACO34551.1| tRNA modification GTPase TrmE [Acidobacterium capsulatum ATCC
           51196]
          Length = 486

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 142/487 (29%), Positives = 232/487 (47%), Gaps = 51/487 (10%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--------- 52
           N   ETI A+ST      I I+RLSGP    + E + + + P  + AS R+         
Sbjct: 3   NLAHETIVAISTPPGRGGIGIVRLSGPRAVPMAEALVRLRHPL-QHASARFAEIYEPSAP 61

Query: 53  ------FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLR 106
                       R LD+ ++  F +P S+TGED  E   HG   V+  ++   A     R
Sbjct: 62  GEPAAEGTSEAPRKLDEAVVTCFQAPRSYTGEDLVEIAAHGSPVVLQMLVRA-ALAQGAR 120

Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166
           LA PGEF+ RAF +G++DL +AE++ DLI ++T  Q R++ E M G LS        +L 
Sbjct: 121 LARPGEFTERAFLSGRLDLTQAEAVRDLIDAQTLYQARVAAEQMGGALSRRVQPAKQQLV 180

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            + + +EA +DF+E +DV    + ++L  I  ++  + S       G ++ +G  + I+G
Sbjct: 181 ELIALLEAGIDFAE-DDVDVTPNAQILTRIDAMQPILESLHRSFARGRLVHSGLTLAIVG 239

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N GKSSLFN L +++ AIVT +PGTTRD+++  + L G  +++ DTAG+RE  D  E 
Sbjct: 240 RPNVGKSSLFNRLVERERAIVTAMPGTTRDLVSERVSLGGIPLELVDTAGLREGADEAET 299

Query: 287 EGIKRTFLEVENADLILLLKEIN---SKKEISFP---KNIDFIFIGTKSDLY-------- 332
            GI+++   + +A L++L+ E N   S++E +          + +  KSDL         
Sbjct: 300 IGIQKSREALADAHLVMLVVEGNTPLSEEEQALAASLAGRRALLVRNKSDLVQQKSLLDT 359

Query: 333 ------------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                              T T       S+ TGEG+  L   +  ++  +       + 
Sbjct: 360 QPEALFASPPEASSEKESETVTNIRAVSTSALTGEGIAGLRETLLQMMQAEGMGSESGML 419

Query: 375 SHKRHLYHLS-QTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
           +  RH   +S       +  +  +     +++  +L  A   L  +TG    + +L+ IF
Sbjct: 420 TSLRHHEAVSAALAALGKARAAAQAGIPHEMVLLDLYEALRQLDSLTGETTADDILNRIF 479

Query: 434 SKFCIGK 440
           S FCIGK
Sbjct: 480 STFCIGK 486


>gi|315453615|ref|YP_004073885.1| putative thiophene and furan oxidation protein [Helicobacter felis
           ATCC 49179]
 gi|315132667|emb|CBY83295.1| putative thiophene and furan oxidation protein [Helicobacter felis
           ATCC 49179]
          Length = 457

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 128/457 (28%), Positives = 219/457 (47%), Gaps = 22/457 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
           N    TI A++T    +AISII++SGP    +   +  K    PR+A+L   +   G +L
Sbjct: 5   NPNPSTIAAIATSPGRAAISIIKISGPDSLAILRALTHKLDFSPRRATLVCIYDQQGDLL 64

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L + F +P S+TGED  E   HGG+ V   IL+   +     LA  GEFS+RAF NG
Sbjct: 65  DQSLALYFKAPHSYTGEDVVEIQCHGGVVVAKLILQACLQA-GASLAQGGEFSKRAFLNG 123

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++D  + ++L  L+ + +    +     + GEL          +  + +  EA +D++E 
Sbjct: 124 RMDFSQIQALGTLLEANSARMVKAMARQLKGELRDFVTHTRHDILALLASSEALIDYAE- 182

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+       +   +  +   + + +   +   I   GY + ++G  N GKSSL NAL  
Sbjct: 183 EDLPLDLYPRMHAQLQAILAKLENTLDVSRNARI--EGYCLGLVGKPNVGKSSLLNALLL 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           KD A+V+ I GTTRD +   L+L+G  +K+ DTAGIR   D +E+ GI ++   ++ +D+
Sbjct: 241 KDRALVSSIAGTTRDTIEEYLELQGISLKLIDTAGIRTAQDAIEQLGIAKSLKSLQESDI 300

Query: 302 ILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEE------YDHLISSFT 347
           +L + ++++  E        +      + I +  KSD  +    +           S+ T
Sbjct: 301 VLAIFDLSTPLESQDRQVIALLLEHAKNIIVVFNKSDCPAQLDTQEVLNLLQGKFSSALT 360

Query: 348 --GEGLEELINKIKSILSNKFKKLPFSIPSHKR--HLYHLSQTVRYLEMASLNEKDCGLD 403
                    +  ++  L+   +  P              L  T+ +L  A        L+
Sbjct: 361 LSTTNPTHCLQSLRQALTPLLEDNPHDTLICASLAQQQALESTISHLNHAQSLLATQELE 420

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + + +L+ A  SL  IT   +VE++LD +FS+FC+GK
Sbjct: 421 LFSYHLQDALNSLATITQPYNVEEMLDSMFSQFCLGK 457


>gi|126695547|ref|YP_001090433.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9301]
 gi|166234804|sp|A3PAQ7|MNME_PROM0 RecName: Full=tRNA modification GTPase mnmE
 gi|126542590|gb|ABO16832.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus str. MIT 9301]
          Length = 460

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 161/444 (36%), Positives = 236/444 (53%), Gaps = 23/444 (5%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRILDKGLLIVFP 70
               ++IIR+SG      C+ I + K  +  + S R F G        + +D+ L++V  
Sbjct: 21  GKGGVAIIRVSGKDAINSCKKIVQTKSKYAWE-SHRVFRGFIQENKQNKFIDEVLILVMK 79

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-LRLANPGEFSRRAFENGKIDLLEAE 129
           SP SFTGED  E H HGGI +VN +L+ L    + +R+ANPGEFS+RAF NGKIDL +AE
Sbjct: 80  SPNSFTGEDVVELHCHGGIIIVNKVLKILLSSNSRVRIANPGEFSQRAFLNGKIDLTQAE 139

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           S+  LI++       L+  G+ GE+        + L +    IEA +DF E  D  +F  
Sbjct: 140 SINQLINASNTRSAELAFSGIQGEIKKKIDDIKNDLINQLCEIEARVDFEE--DFTDFDY 197

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            + L +I  +K  I   I   K    I NG  I ++G +N GKSSL N LAKK+ AIVT+
Sbjct: 198 TKYLKNIKKVKEKIELLIENAKRNSYIHNGISIALIGKTNVGKSSLLNLLAKKEKAIVTN 257

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI- 308
           IPGTTRDV+ ++L +    +KI DTAGIRET + +E  GIK++F +++ +D I+ +  + 
Sbjct: 258 IPGTTRDVIEVNLTINDIPMKIIDTAGIRETYEQIESIGIKKSFGKIKESDFIIYIYSLE 317

Query: 309 ------NSKKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFTGEGLEELINK 357
                 + K     PK      +G K DL       +   +   L+S    +G + LI+ 
Sbjct: 318 EGFNEEDKKIIQEIPKEKLITILGNKKDLIDCKNINSNELKNTILMSIKNNDGEKLLIDT 377

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSL 416
           I        +    +I  ++RH  +LS  +  L +   + E     D+++  LR    +L
Sbjct: 378 IIKK-CGLKQVENINIFLNERHQTNLSACLSNLNDTDEIIENKLPFDLLSIELRDGIQNL 436

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            KITG    E+LLD IFSKFCIGK
Sbjct: 437 SKITGQELTEELLDNIFSKFCIGK 460


>gi|66826549|ref|XP_646629.1| GTP-binding protein 3 [Dictyostelium discoideum AX4]
 gi|74897384|sp|Q55C52|GTPB3_DICDI RecName: Full=tRNA modification GTPase gtpbp3, mitochondrial;
           AltName: Full=GTP-binding protein 3; Flags: Precursor
 gi|60474527|gb|EAL72464.1| GTP-binding protein 3 [Dictyostelium discoideum AX4]
          Length = 512

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 160/489 (32%), Positives = 249/489 (50%), Gaps = 54/489 (11%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------PFPRKASLRYFFGL-D 57
           K+TI+ +S+G   S ++IIR+SGP    V   + KK           R A+L  F+    
Sbjct: 25  KDTIYNLSSGVGKSGVAIIRVSGPQAETVIRKLIKKSDVDKNEEIKSRYATLSTFYNPKT 84

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              LDKG+ I FPSP SFTGED  EFH+HGG AV+   +E +  +   R +  GEF++RA
Sbjct: 85  NEQLDKGMFIWFPSPNSFTGEDVVEFHIHGGRAVIYETMEAIGLIEGTRPSEQGEFTKRA 144

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           FENGK+DL + E L+DL+ + T  Q++++++ M G +S  Y      L    +++EA +D
Sbjct: 145 FENGKMDLTQVEGLSDLLDASTSFQKKIALKQMQGSISEFYLSLRKDLIRASAYMEAFID 204

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F ++ ++      +  N I+ +++ I  H++ GK GE +R+G  I I+G  NAGKSSL N
Sbjct: 205 FGDDAELDPEIVDQSRNRIISIRDKIQQHLNDGKRGERLRDGANIAIVGPPNAGKSSLIN 264

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEV 296
            L  +  +IV+ I GTTRD++ + LD++GY V I DTAG+R  T+D +E EGI+      
Sbjct: 265 LLTNRKASIVSPIAGTTRDIVEVILDIDGYPVIIGDTAGLRNSTNDQIEIEGIEMAKDRF 324

Query: 297 ENADLILLLKE-------INSKKEISFPKNID-------------FIFIGTKSDLYSTYT 336
            N+D+ L L +       +N  + ++   N +              I I  KSDL   + 
Sbjct: 325 NNSDIKLFLFDSFNLFSQLNQNQNLNSSFNFNEEIKNLFNFIDNETIIIFNKSDLLKQFD 384

Query: 337 EEYDHLISSFT---GEGLEELINKIKSI----------------------LSNKFKKLPF 371
              +                 +N I+SI                         + +    
Sbjct: 385 NLKEWENLKLNLLDNIKKSNNLNSIQSIEISCNNNENIKDLLNLLKLNLKNLFEIQDKES 444

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
            + +  R+  HLS  V  L+   L   +  + + +E LR A +S+ +IT  V+++ LLDI
Sbjct: 445 PLLTRLRYKQHLSDCVESLDRY-LYYCEHDVVLASEELRSAILSISEITHSVNIDDLLDI 503

Query: 432 IFSKFCIGK 440
           IF  FCIGK
Sbjct: 504 IFKDFCIGK 512


>gi|325846391|ref|ZP_08169360.1| tRNA modification GTPase TrmE [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481575|gb|EGC84615.1| tRNA modification GTPase TrmE [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 454

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 139/456 (30%), Positives = 237/456 (51%), Gaps = 24/456 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-------KKPFPRKASLRYFFGLD 57
           + TI A+ST      ISI+R+SG   F + + I K        +    R     +    D
Sbjct: 3   ESTIAAISTPQGSGGISIVRMSGDKSFDIIKKIFKPINERALDRDKDNRMMRYGHI-EKD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           GRI D+ ++     P ++T ED  E + HG +  V  IL  L  +    LA+ GEF++RA
Sbjct: 62  GRIYDEVMINFMKGPNTYTREDICEINCHGSMISVRDILNLLLDL-GCELADRGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ D+I+S  E+ ++  ++ +SG L     +         S IE  ++
Sbjct: 121 FLNGRIDLSQAEAVLDIINSTNEISQKQGLKQLSGLLREKIEEIRKIELEALSRIEYSIN 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F+E  D ++    +++  +    ++I+  +S    G+++++G +  I+G  N GKSSL N
Sbjct: 181 FTE--DGEDLPLDDIVEYMDRANDEITKLLSTANKGKLVKDGIETTIIGKPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ AIVTDIPGTTRD +T  ++L    +KI+DTAGIRET D VEK G++R+    +
Sbjct: 239 VLLNENRAIVTDIPGTTRDSITEYINLGNLTLKINDTAGIRETHDEVEKIGVQRSKELAK 298

Query: 298 NADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE------YDHLISS 345
            ADLI+ + + + + +      +   K  + I I  K DL S  ++E           S 
Sbjct: 299 GADLIIAIFDRSREIDEEDKIILDLLKGKNAIIILNKIDLDSKISKEDFDKDFTIIETSM 358

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDI 404
            + +G+++L   I  I  +K       + ++ RH   L+ +   L+ +  + K    +D 
Sbjct: 359 VSRDGIDKLEGAIFDIFDSKELNKESLMITNLRHERLLNSSKEKLQSSLKDIKSFVPIDC 418

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +LR +   LG I G    ++++D +F +FC+GK
Sbjct: 419 VEVDLRSSYDDLGLIIGETVSDEIMDKVFREFCVGK 454


>gi|146297756|ref|YP_001181527.1| tRNA modification GTPase TrmE [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|166200470|sp|A4XN51|MNME_CALS8 RecName: Full=tRNA modification GTPase mnmE
 gi|145411332|gb|ABP68336.1| tRNA modification GTPase trmE [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 455

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 162/467 (34%), Positives = 244/467 (52%), Gaps = 43/467 (9%)

Query: 4   EKETIFAVSTGALP----------SAISIIRLSGPSCFQVCEFICKKKKPFP------RK 47
           E +TI A+ST                         +  +V   I K K+         R 
Sbjct: 2   EFDTIAAISTPIGTGGIGIIRISGQ----------NSIEVAGKIIKSKRFNSIYDIPVRY 51

Query: 48  ASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107
           A+L   +  D   +D+ +LI F +P S+TGED  E   HGG+ V+  ILE + K    R 
Sbjct: 52  AALVEVYDND-EFIDQAILIKFKAPHSYTGEDVVEIQSHGGMVVLRRILEVVIK-NGARH 109

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A PGEF++RAF NG++DL +AE++ D+I+S+TE+ ++ + + + G LS    +  + L +
Sbjct: 110 AMPGEFTKRAFLNGRLDLSQAEAIIDIINSKTELLQKNAAKQLKGVLSKKIDEIAEILLN 169

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           + S IEA +DFSE E V   S +E+   I      I   +   + G  I++G   VI+G 
Sbjct: 170 LISSIEASIDFSEHE-VDEISPQEIEKSIDTALEMIYRLLKTYETGRAIKSGIYTVIVGR 228

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKSSL N L K++ +IVTDIPGTTRDV+   LD+EG  + + DTAG+R+T+DIVE+ 
Sbjct: 229 PNVGKSSLLNRLLKEERSIVTDIPGTTRDVIEEVLDIEGIPIILVDTAGVRQTEDIVERI 288

Query: 288 GIKRTFLEVENADLILLLKEIN--SKKEISF---PKNIDFIFIGTKSDL--------YST 334
           G++RT   VE ADL++ + E +  +K++I      KN  +I +  K+D            
Sbjct: 289 GVERTLKSVERADLVIFMIESDGITKEDIEIFSSIKNKKYIILVNKTDKGINISQDEIKK 348

Query: 335 YTEEYDHLISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +    IS    E LE +   IK  IL    +     + ++ RH   L +   +L  A
Sbjct: 349 LFGKEGIFISIAKDENLELVEKAIKEAILEQNIEGFDEVLITNLRHKELLLKAKGFLTSA 408

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             N     LDI++ +L+ A  S+ +ITG    E ++D IFS FCIGK
Sbjct: 409 KQNLYSFPLDILSIDLKNALDSIYQITGKNVTEDMVDRIFSMFCIGK 455


>gi|15839367|ref|NP_300055.1| tRNA modification GTPase TrmE [Xylella fastidiosa 9a5c]
 gi|14195286|sp|Q9P9U3|MNME_XYLFA RecName: Full=tRNA modification GTPase mnmE
 gi|9108024|gb|AAF85563.1|AE004083_2 thiophene and furan oxidation protein [Xylella fastidiosa 9a5c]
          Length = 451

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 143/431 (33%), Positives = 223/431 (51%), Gaps = 13/431 (3%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           I IIRLSG     +   +       PR A    F  +   ++D GL + FP+P SFTGED
Sbjct: 24  IGIIRLSGSLIKTIATGL-GMTTLRPRYAHYTRFLDVQDEVIDDGLALWFPAPHSFTGED 82

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HG   ++  +L     +   R A+PGEFS RAF NGK+DL++AE++AD+I +  
Sbjct: 83  VLELQGHGSPLLLRQLLTRCLDL-GARQAHPGEFSERAFLNGKLDLIQAEAIADMIGAAD 141

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
               R +   + G  S        +L  +R  +EA +DF+E E +      ++   +  L
Sbjct: 142 LRAARAARRSLDGVFSRRCEALAQQLIRLRIHVEATIDFAE-ESLDTLDRAQIRTSLQTL 200

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             +++  +   + G+ + +G   V++G  N GKSSL NAL   D AIVTD+PGTTRD L 
Sbjct: 201 NVELTQLLRDAEHGKRLCDGLYTVLVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLR 260

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             +   G    + DTAG+RE  D +E+EG++RT  E++ ADL L++ +    +  S    
Sbjct: 261 ESVHFHGLEFVLVDTAGLREEGDAIEREGMRRTLNELQRADLALVVLDACDPQIGSLALA 320

Query: 320 ------IDFIFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELINKIKSILSNKF-KKL 369
                    ++I  K DL +      D     +S+ TG GLE L  +++++L  +  + +
Sbjct: 321 DALTSVPRVLWIHNKLDLLTEPPSALDTDVIPVSAMTGAGLETLKTRLRTLLLGETVETI 380

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLL 429
                +  RH+  L +T  ++  A+       L++ AE LRLA  +LG+I G +  ++LL
Sbjct: 381 EGEFSARLRHVQALQRTAAHVTDANAQFAYEHLELTAEELRLAYKALGEINGSMSPDELL 440

Query: 430 DIIFSKFCIGK 440
             IFS FCIGK
Sbjct: 441 GRIFSNFCIGK 451


>gi|302340304|ref|YP_003805510.1| tRNA modification GTPase TrmE [Spirochaeta smaragdinae DSM 11293]
 gi|301637489|gb|ADK82916.1| tRNA modification GTPase TrmE [Spirochaeta smaragdinae DSM 11293]
          Length = 456

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 141/456 (30%), Positives = 233/456 (51%), Gaps = 19/456 (4%)

Query: 1   MNHEKE-TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFF--G 55
           ++++ +  I A++T    SAI+++R SG  C  +      +       +  SL Y     
Sbjct: 4   LSYDTDRPIAALATPWGRSAIAVVRTSGEGCLDLLARTFSRPAALSGAKSHSLTYGHMLD 63

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G  +++ +L VF +P  +TGE+S E + HG  + +  +L  L ++     A PGEF+ 
Sbjct: 64  ASGLPIEQVVLGVFHAPRGYTGEESVEIYTHGSPSGIQRLLSRLYEV-GFSEAAPGEFTL 122

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NGKIDL EAE++A++I +++     ++M+ +SG L         ++  + + +E  
Sbjct: 123 RAFLNGKIDLTEAEAVAEIIDAKSSAAHAMAMDRLSGSLFRSIDALKKRIVEVLASVEVL 182

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LD+ EEE +   + +     +  + + + +  +  + G + R G K+ I G +NAGKSSL
Sbjct: 183 LDYPEEELLD--APEPDFAPLSEVLHSVEALSATFQEGRLYREGAKVAIAGRTNAGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
           FN   K+D +IV+DI GTTRD +     + G  V + DTAG+R+    VE EGI+R+   
Sbjct: 241 FNLFLKEDRSIVSDIHGTTRDYIEAWTTIAGIPVCLYDTAGLRDAGHPVEVEGIRRSGKV 300

Query: 296 VENADLILLLKEIN---SKKEISFPKNI-------DFIFIGTKSDLYSTYTEEYDHLISS 345
           V+ ADL+L L +     S  E S   +         +IF+ T+SDL     ++    +S+
Sbjct: 301 VDAADLVLYLIDGTTGPSPDEFSLLADQTSAEGQGRYIFVMTRSDLGCQVWDDGVVAVSA 360

Query: 346 FTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
            TG+GL+ L  K+   LS K        +    R    L +    L+           D 
Sbjct: 361 VTGQGLDRLQKKMAKCLSAKAPLTSGEPVVDSLRQKRLLDRCSSALQAVLEGVGSRSWDE 420

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A +L+ A  +LG+ITG V    +L+ IFS FC+GK
Sbjct: 421 LAMDLKDAVDALGEITGEVTSADILESIFSGFCLGK 456


>gi|167770827|ref|ZP_02442880.1| hypothetical protein ANACOL_02180 [Anaerotruncus colihominis DSM
           17241]
 gi|167666867|gb|EDS10997.1| hypothetical protein ANACOL_02180 [Anaerotruncus colihominis DSM
           17241]
          Length = 456

 Score =  361 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 127/454 (27%), Positives = 223/454 (49%), Gaps = 21/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP--FPRKASLRYFFGLDGR---I 60
           +TI A++T      I I+R+SGP  F   E I +  K       A     +GL       
Sbjct: 5   DTIAAIATPLGTGGIGIVRISGPDAFGTAERIVRLAKGGRVSSLAGYTCAYGLAADQEGP 64

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ ++  F  P S+TGED  E   HGG+ +++ +L    K    R A  GEF++RAF N
Sbjct: 65  IDEVIVTAFRGPHSYTGEDIVEISAHGGVYLMDRLLNACCK-NGARPALAGEFTKRAFLN 123

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ DLIS+      R ++    G L    G+  D+LT+  + + A +D+ E
Sbjct: 124 GKLDLTQAEAVIDLISAHGGQAARAALSARGGALYRCVGEIADRLTYFAAHLSAWIDYPE 183

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+++      +  D+      + S     + G ++R G + VI+G  N GKSSL N + 
Sbjct: 184 -EEIEAVDPNALQCDLAKCLQRLDSLAGSYETGRLVREGIETVIVGRPNVGKSSLMNLMT 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
               +IV+DIPGTTRD+++  +   G++  ++DTAGIR+ DD +E+EG+     ++E A 
Sbjct: 243 GVKRSIVSDIPGTTRDLVSDTVLCGGFVFHLTDTAGIRKPDDPIEQEGVGLALEQIERAQ 302

Query: 301 LILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-------DHLISSFT 347
           L+L + +       + ++ +   + ++ + +  K+DL      +          LIS+  
Sbjct: 303 LVLAVFDGSEPLTGDDRRVMEACRGLNALALVNKADLTQVLDAQAFASDFKRVLLISAHD 362

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIA 406
              ++ L   +  ++         +I ++ R    +      L E     E     D +A
Sbjct: 363 TNIIKPLTEALTEMVGLGAFDSSAAIVANTRQRAAVMAAAGELREAVEALENGVSYDAVA 422

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +  A  +L ++TG    + ++D +FS+FC+GK
Sbjct: 423 VCIERALDALLELTGKRASQAVVDSVFSRFCVGK 456


>gi|323700635|ref|ZP_08112547.1| tRNA modification GTPase TrmE [Desulfovibrio sp. ND132]
 gi|323460567|gb|EGB16432.1| tRNA modification GTPase TrmE [Desulfovibrio desulfuricans ND132]
          Length = 463

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 134/460 (29%), Positives = 219/460 (47%), Gaps = 24/460 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-----KPFPRKASLRYFFGLD 57
           H ++TI A++T      + IIR+SGP    +   + +          P +          
Sbjct: 6   HAQDTIAAIATPPGDGGVGIIRISGPRARAIARALFRPAVASFTDFAPYRLHHGRVVDAR 65

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             +LD  L    P P S+TGED  E + HGG  V+  +L+E       RLA  GEF+ RA
Sbjct: 66  EAVLDDVLCAFMPGPNSYTGEDVVELNCHGGRTVLAAVLQECLDR-GARLAERGEFTYRA 124

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F +G++DL +AE++A++I + T+    L+   +SG L         +L  +R+ +   +D
Sbjct: 125 FMHGRMDLSQAEAVAEMIHAPTKAALHLAQVKLSGLLGRRIADLRARLEGLRAQLAVAVD 184

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F + E+++  S  E+   +  ++ DI+  +         R G  +V+ G  NAGKSSL N
Sbjct: 185 FPD-EELECLSPDELAGTVEAVRADIAGLLRAVDRTRAWREGALVVLAGRVNAGKSSLMN 243

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  ++ AIVTD PGTTRD L   L+L+G  ++++DTAG+R TDD VE  G++      +
Sbjct: 244 ALLGRNRAIVTDRPGTTRDYLEETLNLDGLSIRLADTAGMRATDDAVEAAGLEMGRELRD 303

Query: 298 NADLILLLKEINSKKEISFPKNIDFI------FIGTKSDLYS---------TYTEEYDHL 342
            A L+LLL +  +  +         +       +  K+DL +                  
Sbjct: 304 RAALVLLLLDGTAAADAETLDAARRMGPDKGLAVLNKADLDAFDETGGAQLAALGFETLA 363

Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDC 400
           +S+ TG GL+ L  +I+  +L    +  P  +  + R    L++       +A+      
Sbjct: 364 VSAKTGAGLDRLAARIRERVLRGAGQPDPDELAPNARQAAVLAEADRELAGLAADAGAGI 423

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D+++  L  A   L  ITG +    +L+ IF  FCIGK
Sbjct: 424 PYDLLSVRLETACDVLASITGEIAANDVLNAIFDTFCIGK 463


>gi|28199975|ref|NP_780289.1| tRNA modification GTPase TrmE [Xylella fastidiosa Temecula1]
 gi|182682729|ref|YP_001830889.1| tRNA modification GTPase TrmE [Xylella fastidiosa M23]
 gi|32130200|sp|Q879S5|MNME_XYLFT RecName: Full=tRNA modification GTPase mnmE
 gi|28058106|gb|AAO29938.1| thiophene and furan oxidation protein [Xylella fastidiosa
           Temecula1]
 gi|182632839|gb|ACB93615.1| tRNA modification GTPase TrmE [Xylella fastidiosa M23]
 gi|307579023|gb|ADN62992.1| tRNA modification GTPase TrmE [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 451

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 141/431 (32%), Positives = 223/431 (51%), Gaps = 13/431 (3%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79
           I IIR+SG     +   +       PR A    F  +D +++D GL I FP+P SFTGED
Sbjct: 24  IGIIRISGSQIKTIATGL-GMTTLRPRYAHYTRFLDVDDQVIDDGLAIWFPAPHSFTGED 82

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HG   ++  +L     +   R A PGEFS RAF NGK+DL++AE++AD+I +  
Sbjct: 83  VLELQGHGSPLLLRQLLTRCLDL-GARQARPGEFSERAFLNGKLDLIQAEAIADMIGAAD 141

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
               R +   + G  S        +L  +R  +EA +DF++ E +      ++   +  L
Sbjct: 142 LRAARAARRSLDGVFSRRCEALAQQLVRLRIHVEATIDFAD-ESLDTLDRAQIRTSLQTL 200

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             +++  +   + G+ + +G   V++G  N GKSSL NAL   D AIVTD+PGTTRD L 
Sbjct: 201 NVELTQLLRDAEHGKRLCDGLYTVLVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLR 260

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             +   G    + DTAG+R   D +E+EG++RT  E++ ADL L++ +    +  S    
Sbjct: 261 ESVHFHGLEFVLVDTAGLRGEGDAIEREGMRRTLNELQRADLALVVLDACDPQIGSLALA 320

Query: 320 ------IDFIFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELINKIKSILSNKF-KKL 369
                    ++I  K DL +      D     +S+ TG GL+ L  +++++L  +  + +
Sbjct: 321 DALTSVPRVLWIHNKLDLLTEPPSVLDTDVIPVSAMTGAGLDTLKTRLRTLLLGETVETI 380

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLL 429
                +  RH+  L +T  ++  A+       L++ AE LRLA  +LG+I G +  ++LL
Sbjct: 381 EGEFSARLRHVQALQRTAAHVTDANAQFSYEHLELTAEELRLAYKALGEINGSMSPDELL 440

Query: 430 DIIFSKFCIGK 440
             IFS FCIGK
Sbjct: 441 GRIFSNFCIGK 451


>gi|94984585|ref|YP_603949.1| tRNA modification GTPase TrmE [Deinococcus geothermalis DSM 11300]
 gi|205829146|sp|Q1J154|MNME_DEIGD RecName: Full=tRNA modification GTPase mnmE
 gi|94554866|gb|ABF44780.1| tRNA modification GTPase trmE [Deinococcus geothermalis DSM 11300]
          Length = 439

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 236/449 (52%), Gaps = 19/449 (4%)

Query: 1   MNHE--KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-- 56
           M      +TI A++T    + + I+R+SGP    + +   + ++        R+ FG   
Sbjct: 1   MTRTGLSDTIAAIATAPGSAGVGIVRISGPDALGIADGAFRGRRRPSATRGGRFLFGQLV 60

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             DG +LD+GL +VF  P S+TGED AE   HG  AV+  +L  + ++   R A PGEF+
Sbjct: 61  AGDGEVLDEGLCLVFRGPHSYTGEDVAELQTHGSPAVLARVLSRVLEL-GARPARPGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RA+  G++DL +AE++ +L+++ TE  RR +  G+SG L     +    +T   + ++A
Sbjct: 120 LRAYLAGRLDLAQAEAVLELVNAGTETARRQAALGLSGALGERVERIAAHVTRTLAALQA 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LD+ E    +    ++    +   + ++ + +   + G++   G ++ ++G  NAGKSS
Sbjct: 180 MLDYPE----EGVPDEDRTVPLAAAEAELHALVGTARAGQVATRGARLALIGRPNAGKSS 235

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL   + +IVT IPGTTRD L   L L G  V + DTAG+RET D VE  G+++   
Sbjct: 236 LLNALLGYERSIVTPIPGTTRDYLEAQLSLAGVPVTLVDTAGLRETGDEVEAAGVRQAVR 295

Query: 295 EVENADLILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
             E+ADL+L+L++ +  ++      P+    + + TK+DL + +T+     +S+ TG+GL
Sbjct: 296 LAESADLVLVLEDGSQPRDHLPAELPRETRMLRVRTKADLPAAWTDPGALDVSAVTGQGL 355

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
             L + I + L     +    + + +R      + + +++ A    +    D+    L  
Sbjct: 356 SALRDAIHTALIGDAAQGEAWLTT-ERQADAARRALTHIQAA----RSLPDDLAGYELEE 410

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +L  +TG    + ++D +F  FC+GK
Sbjct: 411 ALRALADLTGRDVQDDVVDAVFRNFCVGK 439


>gi|254490328|ref|ZP_05103517.1| tRNA modification GTPase TrmE [Methylophaga thiooxidans DMS010]
 gi|224464461|gb|EEF80721.1| tRNA modification GTPase TrmE [Methylophaga thiooxydans DMS010]
          Length = 419

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 156/422 (36%), Positives = 226/422 (53%), Gaps = 19/422 (4%)

Query: 34  CEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVN 93
            + IC    P PR A   +F   D  I+D G+ + FP P SFTGED  E   HG   V++
Sbjct: 2   VKAICG-TLPKPRYAQFCHFREADDTIIDSGIALYFPGPASFTGEDVVELQGHGSPLVMD 60

Query: 94  GILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGE 153
            + +   ++   R+A PGEFS RAF N K+DL +AE++ADLI S TE   R +M  + G+
Sbjct: 61  RLCQRAIEL-GARMARPGEFSERAFLNNKMDLAQAEAVADLIESSTEQAARSAMRSLQGD 119

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213
            S+    ++++LTH+R ++EA +DF++ E++   +  +V   +  L   +       + G
Sbjct: 120 FSNRINAFLEELTHLRMYVEASIDFAD-EEIDFLAEAQVDKQLQDLLTTLDGIAGSARQG 178

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
            ++R G  +V+ G  NAGKSSL N LA  D AIVTD+ GTTRDVL   + L+G  ++ISD
Sbjct: 179 RLLREGISVVLAGQPNAGKSSLHNQLAGHDAAIVTDVAGTTRDVLREQIHLDGLPLRISD 238

Query: 274 TAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFI 325
           TAG+ E T DIVE EGI+RT  E+  AD ILL+ +        ++K     P +     I
Sbjct: 239 TAGLHEATSDIVELEGIRRTQNELAQADHILLIIDDSLGMTPQDNKILNDMPADKPLTVI 298

Query: 326 GTKSDLYSTYTEE------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             K D       E          +S+ TGEG+E L   +   +    ++      + +RH
Sbjct: 299 RNKIDRSGHQIGETVEAGRQTIFLSAKTGEGMELLRQHLFEAVGYHPEE-EGVFIARRRH 357

Query: 380 LYHLSQTVRYLEMASLNEKDCGL-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
           L  LS+    +          G  +++AE LR A  +LG+ITG    E LLD IFS FCI
Sbjct: 358 LDALSRARLAISHGYDCLAGLGAGELLAEELRQAQNALGEITGTFTTEDLLDHIFSSFCI 417

Query: 439 GK 440
           GK
Sbjct: 418 GK 419


>gi|227485741|ref|ZP_03916057.1| tRNA modification GTP-binding protein TrmE [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227236296|gb|EEI86311.1| tRNA modification GTP-binding protein TrmE [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 454

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 133/454 (29%), Positives = 224/454 (49%), Gaps = 23/454 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-------KKPFPRKASLRYFFGLDGR 59
           TI A+ST A    ISI+R++G     +   I +             R     +    +G 
Sbjct: 4   TIAAISTPAGTGGISIVRMTGDLTLDIINEIFRPINNRLIDPDIDNRYLRYGHIVDGEGE 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ ++    +P ++T ED  E + HG    V  IL  L       LA PGEF++RAF 
Sbjct: 64  IVDEVMVAFMKAPATYTREDVCEINCHGSFVAVREILN-LLLDKGADLAEPGEFTKRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ D+I+S  ++     +  + G L+    +    L    + +E  ++F+
Sbjct: 123 NGRIDLSQAEAVLDIINSTNKLSASQGISQLQGSLTKKIREIRTDLKEGLARLEYSINFT 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E  D ++    ++   I   K  I    S    G+++++G    I+G  N GKSSL N L
Sbjct: 183 E--DGEDLPVSDITAYIKTAKAKIDDLASTSNKGKLVKDGINTTIVGKPNVGKSSLLNVL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             ++ AIVTDIPGTTRD++T  + L  + +KI+DTAGIR+TDD+VEK G+ ++   ++ +
Sbjct: 241 LDENRAIVTDIPGTTRDLITEYISLGDFTLKINDTAGIRDTDDLVEKIGVDKSIELIDES 300

Query: 300 DLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY------DHLISSFT 347
           DLIL + +++       KK +   +  + + I  K+DL   + E+           S   
Sbjct: 301 DLILAIFDMSRDFDEEDKKILDLIRGKNALLILNKADLEGKFDEKIFDVNLPIIKTSMVD 360

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
             G+ +L + I+ I   K  K    + ++ RH   L      ++ +  + E    +D   
Sbjct: 361 QLGIRKLEDTIRDIFDTKEIKRESVLITNTRHERLLKSAKEKIDQSLNDMEAGIPIDACE 420

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  A   LG I G     +++D +F +FC+GK
Sbjct: 421 VDLSSAYEDLGLIIGESVSGEIMDKVFKEFCVGK 454


>gi|108563803|ref|YP_628119.1| tRNA modification GTPase TrmE [Helicobacter pylori HPAG1]
 gi|123073715|sp|Q1CRH7|MNME_HELPH RecName: Full=tRNA modification GTPase mnmE
 gi|107837576|gb|ABF85445.1| putative thiophene/furan oxidation protein [Helicobacter pylori
           HPAG1]
          Length = 461

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 143/453 (31%), Positives = 225/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T +   AISII++SG +   + + + KK+   PR A +R  F  DG +LDK 
Sbjct: 13  NDTIAAIATPSGKGAISIIKISGHNALNILKQLTKKQDFTPRYAYVRDIFS-DGVLLDKA 71

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 72  LVIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 130

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SE ED+
Sbjct: 131 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARSDLLKLLASSEVLIDYSE-EDI 189

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +   KEV  ++          +      +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 190 PSDFLKEVSFNLEKQIASFKDLLDFSNAQKQKNKGHALSIVGKPNAGKSSLLNAMLLEER 249

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 250 ALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILG 309

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 310 VFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKNDLAPKLELEILKSHLKIPYSILETNTL 369

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L++ + 
Sbjct: 370 NSKACLKDLGQKISAFFPKLDTQNKLLLTSLAQ-KTALENAITELQNAKNHLETLELFSY 428

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 429 HLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 461


>gi|254432026|ref|ZP_05045729.1| tRNA modification GTPase TrmE [Cyanobium sp. PCC 7001]
 gi|197626479|gb|EDY39038.1| tRNA modification GTPase TrmE [Cyanobium sp. PCC 7001]
          Length = 456

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 132/440 (30%), Positives = 223/440 (50%), Gaps = 19/440 (4%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVF 69
               +++I+R+SGP    +   + +         S R  +G          +D+ LL++ 
Sbjct: 22  PGQGSVAIVRISGPRAEAIGARLFR-APGQQVWDSHRVLYGHVVDPATEEPVDEALLLLM 80

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
            +P SFT E   E H HGG+  V  +LE L      R A PGEFS+RAF +G++DL  AE
Sbjct: 81  RAPRSFTRETVVELHGHGGLVAVQRVLE-LVLAAGARRALPGEFSQRAFLHGRLDLTRAE 139

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           ++++L+++ +    +L+M G+ G L    G   ++L    + +EA +DF E  D+     
Sbjct: 140 AISELVTARSRRAAQLAMAGLDGGLQRRIGALRERLLDQLAELEARVDFEE--DLPPLDG 197

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           + V+  +  ++ ++   +++ + G ++R G ++ I+G  N GKSSL N L++++ AIVTD
Sbjct: 198 EAVVAALTAVRRELEQLVAEARQGALLREGLRVAIVGRPNVGKSSLLNRLSRRERAIVTD 257

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA-------DLI 302
           +PGTTRD+L  +L L+G  + + DTAGIR TDD VE+ GI R+   +  A       DL 
Sbjct: 258 LPGTTRDLLESELVLDGVPLTLLDTAGIRPTDDAVEQLGIARSREALAAADAVVLVFDLT 317

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISSFTGEGLEELINKIKSI 361
                 +++     P  +  + +G K+DL       + D  IS+ TG G + L+ ++   
Sbjct: 318 AGWTPADAELRALVPDGVPLLLVGNKADLDPGPAAAQADVAISALTGAGSDALVEQLLQR 377

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKIT 420
                +     +  + R     ++    L        +    D    +LR A   LG+IT
Sbjct: 378 -CGAAEVQGVQVALNDRQRDLAARAAVALTGSLEAAAQQLPWDFWTIDLRGAVRCLGEIT 436

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G    E +LD +F++FCIGK
Sbjct: 437 GEEVSEAVLDRVFARFCIGK 456


>gi|238809998|dbj|BAH69788.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 450

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 145/447 (32%), Positives = 246/447 (55%), Gaps = 13/447 (2%)

Query: 5   KETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-LDGRILD 62
            +TI A+S+G  +  AISIIR+SG    ++   I K K    +  +  + F      I+D
Sbjct: 6   NDTIAAISSGGKINQAISIIRVSGQDSIEIVSKIFKGKIGTNQTITYGHIFDNKTKEIID 65

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+  F   ++FTGE++ E + HGG+ V N ILE L      R+A PGEFSRR+F NGK
Sbjct: 66  EVLIAWFIGNKNFTGENTVEINCHGGVLVTNRILE-LLLANGARMALPGEFSRRSFLNGK 124

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ DLI ++T  Q  L+++   G+ S++   +ID+L ++   +E ++D+ E E
Sbjct: 125 MDLIKAEAINDLIHAKTLKQSELAIKKFDGKTSNMIKSFIDELAYLIGQMEINIDYPEYE 184

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D +N  +K++++ +  L++ +S  I + +   +I +G K+ ILG  N GKSS+ N L  +
Sbjct: 185 DFENVLTKDLISRLQKLQDKLSLIIKESENSRLIFDGIKVAILGKPNVGKSSILNCLINE 244

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVTD  GTTRD++     ++G L K+ DTAGIR+T+  +EK GI+++F ++E  D++
Sbjct: 245 DKAIVTDQAGTTRDLVEASYQIDGLLFKLVDTAGIRKTNRKIEKIGIEKSFEQIEKCDVV 304

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           + + E N+ +     K        N   I +  K DL     ++ + +  S   + +++L
Sbjct: 305 IHVNEANTLENDYDKKVEKLAKQFNKPLIKVINKVDLLKNNKKKKNVIYVSAKNKNIDDL 364

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENLRLAS 413
              + +I S            + R L  + +    +  A         +D++  ++R A 
Sbjct: 365 KEALVNIFSKNEINNEE-YVVNARQLALVKKAHSSISDAIESINNGIDVDVVIIDVRQAW 423

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L  I+G  D E LLD +F  FC+GK
Sbjct: 424 ADLVDISGRADNELLLDEMFKNFCLGK 450


>gi|237752888|ref|ZP_04583368.1| tRNA modification GTPase TrmE [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375155|gb|EEO25246.1| tRNA modification GTPase TrmE [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 462

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 237/462 (51%), Gaps = 27/462 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK------KKKPFPRKASLRYFFGLD 57
             +TI A +T    S+++++RLSG +   +   + +      K    PR A L   +  D
Sbjct: 3   NNDTIIAPATTYGQSSLNVLRLSGANALFIASKLARLDFNAIKSLIKPRLARLTKIYFED 62

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G +LD+ +L+ F +P S+T ED  EF  HGG  +   IL+   K    RLANPGEF++RA
Sbjct: 63  GTLLDECILLYFKAPNSYTTEDVIEFQCHGGSFIAQNILQTCLKF-GARLANPGEFTKRA 121

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F  G+IDL +A+++A LI S+     ++ M  + GE+          L    +  E  +D
Sbjct: 122 FLGGRIDLSQAQAVAKLIESQNVNAHQMLMRHLKGEMQEFCENLRATLISFLAHSEVFID 181

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +++EE  Q+   + +   +  +  ++ + + Q +   ++ +GYK+ I+G  N GKSSL N
Sbjct: 182 YADEELPQDLL-ENLKQKLQVVLKNLKALLEQSQNKRVLFDGYKLCIIGKPNVGKSSLLN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL + D AIV+DI GTTRD +  +  L GYL+++ DTAGIRE+ D VE EGIKR+  + +
Sbjct: 241 ALLRNDRAIVSDIAGTTRDSIEENFVLGGYLLRLIDTAGIRESTDAVENEGIKRSLEKAK 300

Query: 298 NADLILLLKE------INSKKEISFPKNIDFI----FIGTKSDLY----STYTEEYD--H 341
            +DL+L+L +          + I   K          +  K+DL     S   +E++   
Sbjct: 301 ESDLLLVLFDGSLPLSAEDFQIIELLKAYKLQKKILVLINKTDLKMQLESKVLDEFNPLL 360

Query: 342 LISSFTGEGLEELINKIK---SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           L         + L+ + K     L N+ +K+   +   +     + + +  L+ +    +
Sbjct: 361 LSLKGDLLNEDSLLERFKLRLEELLNENEKMESLLLVSEYQFQAVQECINALKNSLNPLE 420

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  L++ + ++  A  ++  IT   +  Q+LD++F  FC+GK
Sbjct: 421 NGELELFSFHINEALRAISTITKPYEYSQMLDVMFGDFCLGK 462


>gi|217033917|ref|ZP_03439341.1| hypothetical protein HP9810_870g49 [Helicobacter pylori 98-10]
 gi|216943680|gb|EEC23125.1| hypothetical protein HP9810_870g49 [Helicobacter pylori 98-10]
          Length = 450

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 138/453 (30%), Positives = 226/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AIS+I++SG +   + + + +K+   PR A +R  F  +G +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +  + L  + +  E  +D+SEE+  
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIP 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +F ++  LN    +       +    + +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 180 SDFLNEVSLNLEKQI-ASFKDLLDFSNMQKQKNKGHTLSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D++L 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIVLG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELETLKSYLKIPYSLLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQ-KTALENAIFELQNAKDHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450


>gi|261840127|gb|ACX99892.1| tRNA modification GTPase TrmE [Helicobacter pylori 52]
          Length = 450

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 138/453 (30%), Positives = 224/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AIS+I++SG +   + + + +K+   PR A +R  F  +G +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +  + L  + +  E  +D+SEE+  
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIP 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +F  +  LN    +       +      +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 180 SDFLDEVSLNLEKQI-ASFKDLLDFSNTQKQRNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D++L 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDIVLG 298

Query: 305 LKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEQEDFNLIDTLNRTKKPCIVVLNKNDLVPKLELEILKSYLKIPYSLLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISTFFPKLDTQNKLLLTSLAQ-KTALENAIFELQNAKDHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450


>gi|308190244|ref|YP_003923175.1| thiophene and furan oxidation protein [Mycoplasma fermentans JER]
 gi|319777612|ref|YP_004137263.1| tRNA modification gtpase mnme [Mycoplasma fermentans M64]
 gi|307624986|gb|ADN69291.1| thiophene and furan oxidation protein [Mycoplasma fermentans JER]
 gi|318038687|gb|ADV34886.1| tRNA modification GTPase mnmE [Mycoplasma fermentans M64]
          Length = 447

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 145/447 (32%), Positives = 246/447 (55%), Gaps = 13/447 (2%)

Query: 5   KETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-LDGRILD 62
            +TI A+S+G  +  AISIIR+SG    ++   I K K    +  +  + F      I+D
Sbjct: 3   NDTIAAISSGGKINQAISIIRVSGQDSIEIVSKIFKGKIGTNQTITYGHIFDNKTKEIID 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L+  F   ++FTGE++ E + HGG+ V N ILE L      R+A PGEFSRR+F NGK
Sbjct: 63  EVLIAWFIGNKNFTGENTVEINCHGGVLVTNRILE-LLLANGARMALPGEFSRRSFLNGK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ DLI ++T  Q  L+++   G+ S++   +ID+L ++   +E ++D+ E E
Sbjct: 122 MDLIKAEAINDLIHAKTLKQSELAIKKFDGKTSNMIKSFIDELAYLIGQMEINIDYPEYE 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D +N  +K++++ +  L++ +S  I + +   +I +G K+ ILG  N GKSS+ N L  +
Sbjct: 182 DFENVLTKDLISRLQKLQDKLSLIIKESENSRLIFDGIKVAILGKPNVGKSSILNCLINE 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIVTD  GTTRD++     ++G L K+ DTAGIR+T+  +EK GI+++F ++E  D++
Sbjct: 242 DKAIVTDQAGTTRDLVEASYQIDGLLFKLVDTAGIRKTNRKIEKIGIEKSFEQIEKCDVV 301

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           + + E N+ +     K        N   I +  K DL     ++ + +  S   + +++L
Sbjct: 302 IHVNEANTLENDYDKKVEKLAKQFNKPLIKVINKVDLLKNNKKKKNVIYVSAKNKNIDDL 361

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENLRLAS 413
              + +I S            + R L  + +    +  A         +D++  ++R A 
Sbjct: 362 KEALVNIFSKNEINNEE-YVVNARQLALVKKAHSSISDAIESINNGIDVDVVIIDVRQAW 420

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L  I+G  D E LLD +F  FC+GK
Sbjct: 421 ADLVDISGRADNELLLDEMFKNFCLGK 447


>gi|315585839|gb|ADU40220.1| tRNA modification GTPase TrmE [Helicobacter pylori 35A]
          Length = 450

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 139/453 (30%), Positives = 226/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AIS+I++SG S   + + + +K+   PR A +R  F  +G +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISVIKISGNSALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +  + L  + +  E  +D+SEE+  
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIP 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +F ++  LN    +       +    + +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 180 SDFLNEVSLNLEKQI-ASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D++L 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIVLG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQ-KTALENAIFELQNAKNHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450


>gi|308062715|gb|ADO04603.1| tRNA modification GTPase TrmE [Helicobacter pylori Cuz20]
          Length = 450

 Score =  359 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 225/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T +   AIS+I++SG +   + + + +K+   PR A +R  F  +G +LDK 
Sbjct: 2   NDTIAAIATPSGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SE ED+
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSE-EDI 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            N    EV  ++          +    + +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 179 PNDFLDEVSQNLEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D++L 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDIVLG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELETLKSYLKIPYSLLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQ-KTALENAIFELQNAKNHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  SL  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HLLSAIESLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|210135618|ref|YP_002302057.1| tRNA modification GTPase TrmE [Helicobacter pylori P12]
 gi|210133586|gb|ACJ08577.1| thiophene/furan oxidation protein [Helicobacter pylori P12]
          Length = 461

 Score =  359 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 139/453 (30%), Positives = 223/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AISII++SG +   + + + +K+   PR A +   F  +G +LDK 
Sbjct: 13  NDTIAAIATPLGKGAISIIKISGNNALNILKQLTQKQDFTPRYAYVHDIFS-NGVLLDKA 71

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 72  LVIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 130

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+  
Sbjct: 131 LSEIEASVQLILCEDESALNALARQLKGELKIFIEEARSDLLKLLASSEVLIDYSEEDIP 190

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +F  +  LN    +       +      +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 191 SDFLKEVSLNLEKQI-ASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEER 249

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 250 ALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDIILG 309

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 310 VFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLVPKLELEILKSHLKIPYALLETNTL 369

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+QT   LE A    ++       L++ + 
Sbjct: 370 NSKACLKDLGQKISTFFPKLDTQNKLLLTSLAQTT-ALENAITELQNAKNHLETLELFSY 428

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 429 HILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 461


>gi|22002507|gb|AAM82659.1| TrmE [Synechococcus elongatus PCC 7942]
          Length = 482

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 141/460 (30%), Positives = 229/460 (49%), Gaps = 29/460 (6%)

Query: 6   ETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           +TI A++T       ++ I+RLSG +  ++   I +     P + S R  +G       G
Sbjct: 27  DTIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQIAGQQPWE-SHRILYGYIRDPESG 85

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           R++D+ LL+   +P S+T ED  E H HGG+  V   L+   +    RLA PGEF+ RAF
Sbjct: 86  RLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQLCIRA-GARLAEPGEFTLRAF 144

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AES+ADLIS+++    + ++  + G+L     Q  D+   I + +EA +DF
Sbjct: 145 LNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAEVEARIDF 204

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            +  D+     + +   +       +S     +    +  G KI I+G  N GKSSL NA
Sbjct: 205 ED--DLPPLDLEAIAAQLTAAGAGHASDFINCRSRGTVAYGPKIAIVGRPNVGKSSLLNA 262

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            ++ D AIVTD+PGTTRD++   L + G  V++ DTAGIRET D VE+ G++R+    ++
Sbjct: 263 WSRCDRAIVTDLPGTTRDLVESQLIVGGIPVQVLDTAGIRETSDQVEQIGVERSRRAAQS 322

Query: 299 ADLILLLKEINSKKEISFP------KNIDFIFIGTKSDLYSTYTE----------EYDHL 342
           ADL+LL  + ++              +   + +  K D  S              +    
Sbjct: 323 ADLVLLTIDASAGWSAEDQTIWEAVSDRPILLVINKRDRLSEAERHAIALPQQEFKAIVW 382

Query: 343 ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
            ++   +G+E+L   I + + +       +    ++R +  L+     L       +   
Sbjct: 383 TAAAQQQGIEDLEAAILAAVGTGDLTSANWDWALNQRQVAALTTAQTALRRVEETLQAQL 442

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD    +LR A  +LG ITG    E +LD+IFS+FCIGK
Sbjct: 443 PLDFWTIDLREAIAALGSITGEEIAESMLDLIFSRFCIGK 482


>gi|261838727|gb|ACX98493.1| thiophene/furan oxidation protein [Helicobacter pylori 51]
          Length = 461

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 139/453 (30%), Positives = 224/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AIS+I++SG +   + + + +K+   PR A +   F  +G +LDK 
Sbjct: 13  NDTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVHDIFS-NGVLLDKA 71

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 72  LVIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQTCLNL-GARLAKAGEFSKKAFLNHKMD 130

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +  D L  + +  E  +D+SE ED+
Sbjct: 131 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARDNLLKLLASSEVLIDYSE-EDI 189

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +    EV  D+          +    + +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 190 PSDFLDEVSLDLEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEER 249

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D++L 
Sbjct: 250 ALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIVLG 309

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 310 VFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELETLKSYLKIPYSLLETNTL 369

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L++ + 
Sbjct: 370 NSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQ-KTALENAIFELQNAKDHLETLELFSY 428

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 429 HLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 461


>gi|332674218|gb|AEE71035.1| tRNA modification GTPase TrmE [Helicobacter pylori 83]
          Length = 450

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 138/453 (30%), Positives = 224/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AIS+I++SG +   + + + +K+   PR A +R  F  +G +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SE ED+
Sbjct: 120 LSEIEASVQLILCEDESALNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSE-EDI 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +    EV  ++          +    + +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 179 PSDFLDEVSFNLEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D++L 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIVLG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLVPKLELEILKSYLKIPYSLLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQ-KTALENAIFELQNAKDHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|320354718|ref|YP_004196057.1| tRNA modification GTPase trmE [Desulfobulbus propionicus DSM 2032]
 gi|320123220|gb|ADW18766.1| tRNA modification GTPase trmE [Desulfobulbus propionicus DSM 2032]
          Length = 463

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 132/471 (28%), Positives = 220/471 (46%), Gaps = 43/471 (9%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSG----------PSCFQVCEFICKKKKPFPRKASLR 51
           +   +TI A++T                        P    +   +    KP     S +
Sbjct: 4   HRANDTIAAIATAPGT----------GGIGIIRISGPEALTLLRQLFVSHKPHSHFTSHQ 53

Query: 52  YFFG----LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107
            ++G      G++LD+ L +   +P ++T ED  E   HG   V+  IL  + +    R 
Sbjct: 54  LYYGTVMNRAGQVLDEALAVYMRAPHTYTREDVVELQCHGSYLVLQEILRTVFER-GARP 112

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A+PGEF++RAF  G+IDL  AE++ DL+ ++TE    L++  + G L +   Q  D L  
Sbjct: 113 ADPGEFTKRAFLAGRIDLTRAEAVVDLLQAQTEKGALLAVNQLRGALFAELEQIRDHLLS 172

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           I + +E  +DF +E+     + +        L   +   I+  + G+I+R G K+VI G 
Sbjct: 173 ILAVLEVAIDFPDEDAEIFAAQQIQDQLQTHLIGPLERLIAMAEQGKIVREGVKVVITGQ 232

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKSSL N L +++ A+VT +PGTTRD +   + + G  + + DTAGIR   D VE  
Sbjct: 233 PNVGKSSLLNTLLQEERALVTPLPGTTRDTIEERIAIRGIPLHLVDTAGIRLHHDPVEAL 292

Query: 288 GIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDL---------Y 332
           GI+R   +VE ADL+L L +         ++      N   + +  K DL         +
Sbjct: 293 GIERARQKVEQADLVLFLVDAQVGWRETDEELYRSLGNKPHVIVVNKRDLATKEQIASIF 352

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS--HKRHLYHLSQTVRYL 390
           S ++ +    IS+   EG++EL   +   +     +L   +    + RH   L +T+   
Sbjct: 353 SRFSGKKVVAISAKQQEGIDELQEAVYQAIIGDGAELCERMTCAPNTRHRSILHKTLTAC 412

Query: 391 E-MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +       +D++A  ++ A   LG I G    + +LD++FS+FCIGK
Sbjct: 413 RGFEAAMAMAAPVDLLAVEVQSALDHLGDIVGLTTPDDVLDVVFSQFCIGK 463


>gi|302381483|ref|YP_003817306.1| tRNA modification GTPase TrmE [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192111|gb|ADK99682.1| tRNA modification GTPase TrmE [Brevundimonas subvibrioides ATCC
           15264]
          Length = 433

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 161/436 (36%), Positives = 247/436 (56%), Gaps = 6/436 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T A   AI+I+RLSGP        +        R ASLR        ++D+ L
Sbjct: 3   DTIFALATPAGRGAIAILRLSGPDTDAALTAL-GAGTVRARVASLRTLR-QGPDVIDQAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P S+TGED AE H+HGG AVV      L  +  LR A+PGEF+RRAFENG++DL
Sbjct: 61  VLRFPGPGSYTGEDCAELHLHGGRAVVEAASSALIAL-GLRPADPGEFTRRAFENGRMDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ADLI +ET  Q   ++  + G LS  Y  +   L    + +EA++DF +EE   
Sbjct: 120 AQAEAVADLIDAETRAQAGQALGQLEGALSQTYAGFRRDLLKALALVEAEIDFPDEELPD 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           + +       +  L   +++ ++    G  +R GY+IV++G +NAGKS+LFNAL  ++ A
Sbjct: 180 HLAQTAG-PVLDGLSEALNAALADADRGRRVREGYRIVLIGETNAGKSALFNALVAREAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVT I GTTRDVL  DL + GY V +SDTAG+R++ D VE EG++R     + ADL L +
Sbjct: 239 IVTPIAGTTRDVLDADLIMGGYAVTLSDTAGLRDSADPVEAEGVRRARARAQAADLRLWV 298

Query: 306 KEINSKK-EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           +     + + +       + + TK+DL +        ++S+ TGEG+ +L   I++ L  
Sbjct: 299 RAPGDPEGDAAMFTTPQDLVVWTKADLGARDPAAGGLVVSATTGEGMSDLRAAIEARLIR 358

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
                 F   + +RH   L + +  +E           ++  E+LR A+ +LG++TG + 
Sbjct: 359 DLAGADFPAVTRERHRRRLVEALASVEAGRARLGSAP-ELAGEDLRRAADALGRVTGAIG 417

Query: 425 VEQLLDIIFSKFCIGK 440
           VE +L  +FS FCIGK
Sbjct: 418 VEDILGEVFSTFCIGK 433


>gi|317178156|dbj|BAJ55945.1| tRNA modification GTPase TrmE [Helicobacter pylori F16]
          Length = 450

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 225/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AIS+I++SG +   + + + +K+   PR A +R  F  +G +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +  D L  + +  E  +D+SEE+  
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARDNLLKLLASSEVLIDYSEEDIP 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +F  +  LN    +       +    + +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 180 SDFLDEVSLNLEKQI-ASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQ-KTALENAIFELQNAKDHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450


>gi|226490853|ref|NP_001149416.1| LOC100283042 [Zea mays]
 gi|195627080|gb|ACG35370.1| tRNA modification GTPase trmE [Zea mays]
          Length = 546

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 134/471 (28%), Positives = 230/471 (48%), Gaps = 40/471 (8%)

Query: 7   TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKKK---------KPFPRKASLRYFFG 55
           TI A+ T  G  P+A+ I+R+SGP    V + + +           +P            
Sbjct: 79  TIAAIVTSLGGGPAAVGIVRISGPDAVAVADRVFRPAGTRRASTPWQPRSHFVEYGLALD 138

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            DG ++D+ L++   SP S+T ED  E   HG    +  +L    +    RLA+PGEF+ 
Sbjct: 139 ADGSVIDEVLVVPMLSPRSYTREDVVELQCHGNDLCLRRLLRACLEA-GARLADPGEFTL 197

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE+++ LIS+++      ++ G+ G  S+L      +   + + IEA 
Sbjct: 198 RAFLNGRLDLAQAENVSRLISAKSAAAADSALAGIQGGFSTLVKSLRSRCIELLTEIEAR 257

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF +  ++       +++ I  ++ ++   +      +++++G +I I+G  N GKSSL
Sbjct: 258 LDFED--EMPPLDPVMLVSKINCMRKEVQDALDTSNYDKLLQSGLQIAIIGRPNVGKSSL 315

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NA +K + AIVT+I GTTRDV+  ++ + G  V + DTAGIRETDD+VEK G+KR+   
Sbjct: 316 LNAWSKSERAIVTEIAGTTRDVVEANVSIHGVPVTLLDTAGIRETDDVVEKIGVKRSEAA 375

Query: 296 VENADLILL---LKEINSKKEISFPKN-----------IDFIFIGTKSDLYSTYTEEYDH 341
              ADLI++     +  +  +    ++           +  + +  K D       E   
Sbjct: 376 AMGADLIVMAISAVDGWTDDDTKLMEHVSVNRKSSGSAVPMVLVINKVDCAPFVPGEQFK 435

Query: 342 LIS----------SFTGEGLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHLSQTVRY- 389
             S          + TG+G+ +L + +  +   +           ++R    L +T    
Sbjct: 436 QFSGLFRKHVQTCAVTGKGISDLESAVIEVRGIEHVPSEGRRWTVNQRQFEQLLRTKEAF 495

Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             + S   +   +D    +LR A+++L  I+G    E++L  IFSKFCIGK
Sbjct: 496 ARLESSINEQLPMDFWTVDLREAALALATISGEDISEEVLSSIFSKFCIGK 546


>gi|242011052|ref|XP_002426271.1| GTPase mss1, putative [Pediculus humanus corporis]
 gi|212510334|gb|EEB13533.1| GTPase mss1, putative [Pediculus humanus corporis]
          Length = 694

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 173/470 (36%), Positives = 257/470 (54%), Gaps = 55/470 (11%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDG-RILDKG 64
           TIFA+S+G     +++IR+SGP+  +    + K K+ P PR ASL+          LDKG
Sbjct: 21  TIFALSSGQGKCGVAVIRVSGPNAREAILKMTKCKELPKPRMASLQLIRDPQTLEELDKG 80

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGEDS EF +HGG AV+  +L  L+K+ N R+A PG+F++RAF  GK+D
Sbjct: 81  LILWFPEPKSFTGEDSCEFQIHGGPAVIESVLTALSKLSNFRMAEPGDFTKRAFHAGKLD 140

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L+E E L DLI +ET +QR+ ++  M G LS LY  W   L    + +EA +DFSE+E++
Sbjct: 141 LVEVEGLGDLIHAETNLQRKQALYQMEGNLSKLYKTWRANLLKNLAHVEAYIDFSEDENI 200

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +N   + V  ++  LKN+I +H+S G+ GE +R+G K  I+G  NAGKSSL N L +K  
Sbjct: 201 ENDIIENVHKNLTVLKNEIENHLSDGRKGERLRDGIKTAIIGEPNAGKSSLLNILCQKPA 260

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLIL 303
           AIVT IPGTTRD +++ L+L G+ + + DTAG+R    DIVE+EGI RT      +D++L
Sbjct: 261 AIVTPIPGTTRDTISVHLNLCGFPLTLVDTAGLRSNATDIVEQEGISRTKKVTGQSDILL 320

Query: 304 LLKEIN------------SKKEI----------------------SFPKN--IDFIFIGT 327
           L+ +               K +I                      S  KN     IF+  
Sbjct: 321 LIIDAKMLMSHFQTTSSLHKPDILSVIKAHIKNLDLKTDCNITLESLMKNNLQKCIFVLN 380

Query: 328 KSDLYSTYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFKKL--PFSIP 374
           K DL +   +E                S  T EG+ +L+  +   + +          + 
Sbjct: 381 KIDLLNNEEKEVFQAFMKENNFTFSLISCKTEEGVNQLLQSMAKTMQHVCGNPTRENPVL 440

Query: 375 SHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
           ++ RH YHL+++++YL E     + D  L   A+ LRL+   +GKI G  
Sbjct: 441 TNSRHRYHLTESLKYLNEYFKFADTDITLS--AQKLRLSLRHIGKIMGIF 488


>gi|118387767|ref|XP_001026986.1| small GTP-binding protein domain containing protein [Tetrahymena
           thermophila]
 gi|89308756|gb|EAS06744.1| small GTP-binding protein domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 550

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 164/529 (31%), Positives = 272/529 (51%), Gaps = 92/529 (17%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK------------------KPF 44
           H  + I+A+++G + + +SIIR+SG +C Q  + + +                       
Sbjct: 23  HFSDNIYAIASGNVKAGVSIIRISGSNCLQAGQMLVQNAQQRQLIKGMNNSQVQDYLNLK 82

Query: 45  PRKASLRYFFGLDG-----------------RILDKGLLIVFPSPESFTGEDSAEFHVHG 87
            R A  +  + L                   + +D+G+ + F  P+S+TGED  E H+HG
Sbjct: 83  NRYAHFKKLYSLIDPTVSPQNQSFQKQDLIYQQIDQGIFMYFQGPKSYTGEDIVEMHIHG 142

Query: 88  GIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSM 147
             A+   +L EL+++ N RLA+PGEF++RA  N K+DLLE E LADL++SETE QR  S 
Sbjct: 143 SRALQKKVLLELSQLNNFRLADPGEFTKRAMINNKLDLLEVEGLADLLNSETESQRVQST 202

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDF-SEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +   G+ S +   W  +L    +  EA +DF S+++DV+     +   ++  +  DI+  
Sbjct: 203 QQFLGKSSQILEDWRFQLIRALAHAEAFIDFESDQDDVEFNILGKTQENVQQVIKDINEQ 262

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +S    GEI+R+G KI I+G  NAGKS+L N LAKKD+AIV++IPGTTRD L++ L++ G
Sbjct: 263 LSDRNRGEILRDGMKISIIGKPNAGKSTLLNCLAKKDIAIVSEIPGTTRDALSVSLNISG 322

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVE----------------------------- 297
           + + + DTAGIR+T D++E++G+ +    ++                             
Sbjct: 323 FPILLYDTAGIRQTKDVIEEKGVNKALQNIQVLKQIIKLKLQFGKIKRQHARESDLNIWI 382

Query: 298 --------NADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-----------E 338
                    AD   ++++I    EI    N + +    K D  ++  E           +
Sbjct: 383 IDIDDVIKQADGSYIVQDIKEISEI-LESNQNTLIFINKIDKVNSQKEITDITIRDKKFK 441

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKF-------KKLPFSIPSHKRHLYHLSQTVRYLE 391
            D  IS+   + +  L++K+   ++ +             SI +  RH   L + + +LE
Sbjct: 442 IDGQISAQHNQNINSLLDKLTKKINERLDITDGIMSSGTISIITQTRHRLELQKCLEHLE 501

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + S N+++  +DI+ E LR A   +G+ITG VDVE++LD++FS+FCIGK
Sbjct: 502 IFSRNKQNLPVDIVCEELRQAVNCIGRITGRVDVEEVLDVLFSEFCIGK 550


>gi|213389877|gb|ACJ46004.1| tRNA modification GTPase [Palm lethal yellowing phytoplasma]
          Length = 460

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 153/458 (33%), Positives = 246/458 (53%), Gaps = 23/458 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQ---------VCEFICKKKKPFPRKASLRYFFG 55
           ++TI A+ST     +ISIIR+SGP   +           +      K         +   
Sbjct: 4   EDTIAAISTPLGTGSISIIRISGPEAIEKIGKIFKFKNSKKKNNLLKELSHTIHNGFILD 63

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G ILD  L+ +F  P SFTGED+ E + HGGI +   +LE +  +  +R+A PGEFS+
Sbjct: 64  DKGEILDDVLISIFRKPNSFTGEDTIEINAHGGILITQLLLERVLSL-GIRMACPGEFSK 122

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N KIDL +AES+ DLI ++ E   +L+  G+      L  +    +  +   IE +
Sbjct: 123 RAFLNNKIDLTQAESIMDLIHAQNEKALKLAQFGLQKNTFKLVSELQQDILTLLGEIEVN 182

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D+ N +++ +L     L + I + ++       I+NG K +I+G  N GKSSL
Sbjct: 183 IDYPEYDDIPNITNQNILFRTKILIDKIQNILNCSIKNTFIKNGIKTLIIGKPNVGKSSL 242

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  ++ +IV+DI GTTRD ++ ++++ G  + + DTAGIRET D +EK GI++    
Sbjct: 243 LNVLLNEERSIVSDIAGTTRDFVSENININGINLNLIDTAGIRETQDDLEKIGIQKAKKI 302

Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345
           +++A+L+LL+ + ++  E      +   +N   I IG+KSDL +       +E    IS+
Sbjct: 303 LKDAELVLLILDQSNVLEREDEFLLKLTENHFRILIGSKSDLPNKLNISSLKENVIFISN 362

Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGL 402
            T +G+  L   I  +   NK K   F+  S+ RH+  L   +  L M   ++ ++   +
Sbjct: 363 ITKKGINSLKENILKMFKLNKVKSKDFNYFSNARHIKQLKIALNSLIMMKKTITKQLMPI 422

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           DI    L+ A  SLG+I G    E L++ +FSKFC+GK
Sbjct: 423 DIYTIYLKEAYESLGEILGSNVKESLINELFSKFCLGK 460


>gi|317179628|dbj|BAJ57416.1| tRNA modification GTPase TrmE [Helicobacter pylori F30]
          Length = 450

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 136/453 (30%), Positives = 223/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AIS+I++SG +   + + + +K+   PR A +   F  +G +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVHDIFS-NGALLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SE ED+
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSE-EDI 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +    EV  ++          +    + +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 179 PSDFLNEVSQNLEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +E+ D++L 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESTDKIERLGIEKSLKSLESCDIVLG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELETLKSYLKIPHSLLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQ-KTALENAIFELQNAKNHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450


>gi|145220471|ref|YP_001131180.1| tRNA modification GTPase TrmE [Prosthecochloris vibrioformis DSM
           265]
 gi|205415794|sp|A4SGR9|MNME_PROVI RecName: Full=tRNA modification GTPase mnmE
 gi|145206635|gb|ABP37678.1| tRNA modification GTPase trmE [Chlorobium phaeovibrioides DSM 265]
          Length = 473

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 234/458 (51%), Gaps = 33/458 (7%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK--------ASLRYFFGLDGRILDKG 64
           T     A++I+R+SG    ++ + + +KK              A         G ++D+ 
Sbjct: 19  TPVGVGALAIVRMSGRGVLEIADRVFRKKGGTAFSFKEAEGFSAHFGTLSDSRG-MVDEV 77

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + +VF +P SFT ED  EF  HGG  VV  +L+ L      RLA PGEF+RRAF +G+ID
Sbjct: 78  IALVFRAPSSFTMEDMVEFTCHGGPVVVRHLLQALL-DSGCRLAEPGEFTRRAFLSGRID 136

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           LL+AE++ ++I + TE   R ++  M G LS    +    L    + +E +LDFSE +DV
Sbjct: 137 LLQAEAIGEMIHARTESAFRTAVTQMQGNLSRHLQEMRAGLLQSCALLELELDFSE-DDV 195

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  S   +  ++  L+ +I   +   + G ++  G   VI G  NAGKS+L NAL   + 
Sbjct: 196 EFQSRDALRLEVGRLQGEILRLVESYREGHLLTEGVAAVIAGRPNAGKSTLLNALLGHER 255

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+ +PGTTRD +      E  + +++DTAG+R +D+ VE EGI+R++ ++  ADL+L 
Sbjct: 256 AIVSHMPGTTRDYIEECFIHEKTMFRLTDTAGLRHSDEEVEHEGIRRSYRKISEADLMLY 315

Query: 305 LKEINS---KKEISFPK-------NIDFIFIGTKSDLYS----------TYTEEYDHLIS 344
           + + +    ++E +  +           I +  K+DL            + T      ++
Sbjct: 316 IIDSSEGDMQQEAAAARELRQRHPESRMIVVANKTDLAPDAGGMIAQLQSETACPVIAMA 375

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402
           +  G+GL EL + +  ++    K    S+  +  RH   L      L+ A  L       
Sbjct: 376 ASKGDGLNELKSTMAGMVEGLDKLHEASVLVTSLRHYEALRNAADSLDNALQLITAREPA 435

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++IA  LR A   +G+ITG V  ++LL+ IF +FCIGK
Sbjct: 436 ELIAFELRSALDYVGEITGKVVSQELLNTIFDQFCIGK 473


>gi|317133704|ref|YP_004093018.1| tRNA modification GTPase TrmE [Ethanoligenens harbinense YUAN-3]
 gi|315471683|gb|ADU28287.1| tRNA modification GTPase TrmE [Ethanoligenens harbinense YUAN-3]
          Length = 455

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 128/457 (28%), Positives = 222/457 (48%), Gaps = 23/457 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLD 57
           + E I A++T      I +IRLSG   F V + +   K            A+      +D
Sbjct: 2   QFEPIAAIATPHGTGGIGVIRLSGDGAFTVAQRVFHAKSGKALADMAGYTAAFGQVCDVD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  +D+ +++VF +P+S+TGED  E   HGG  ++   L  L      RLA PGEF+RRA
Sbjct: 62  G-PVDEAVVLVFRAPKSYTGEDVVEISCHGGETILRRTLAALLAT-GARLAGPGEFTRRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F +G+IDL EAE++  LI +++    R ++    G L     Q  + L  + + + A  D
Sbjct: 120 FLHGRIDLTEAEAVMQLIGAQSADAVRAAIAQHEGALYREIRQIKEILYQLSAELAAFFD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + + +D+   + + VL  +  ++  +     Q + G ++R+G  + I+G  N GKS+L N
Sbjct: 180 YPD-DDIPALTRESVLPRLAEVQEKLEKLCVQYETGRVLRDGVTVAIVGKPNVGKSTLMN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  ++ +IVT+I GTTRDV+       G  + + DTAG+RETDD VE+ G+ R   ++E
Sbjct: 239 RLLGEERSIVTEIAGTTRDVVEESAQFAGMTLHLFDTAGLRETDDPVERIGVARAKSKIE 298

Query: 298 NADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYD-------HLIS 344
            A L+ +L + +   +       S  +    I I  K+DL                  IS
Sbjct: 299 QAMLVFVLFDGSRPLDGEDESIFSMLQGKRVIAILNKADLPQRCDMARIRSVFPDMVSIS 358

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLD 403
           +    G++ L  +++     +       + ++ R L    +     +E          LD
Sbjct: 359 AAEAHGMDALETRLRDRFRLEAIDPRAGMLANARQLDCALRAKTAVMESRQGLIAGFTLD 418

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +++  L+ A  +L ++TG    E +++ +F++FC+GK
Sbjct: 419 VLSVGLQTAEDALAELTGEQASEAVIEKVFAQFCVGK 455


>gi|330837282|ref|YP_004411923.1| tRNA modification GTPase mnmE [Spirochaeta coccoides DSM 17374]
 gi|329749185|gb|AEC02541.1| tRNA modification GTPase mnmE [Spirochaeta coccoides DSM 17374]
          Length = 487

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 237/450 (52%), Gaps = 15/450 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LD 57
              + IFA++T    SA++++R SGP   +    +  +        +     G     L 
Sbjct: 41  RTDDDIFALATPWGESALAVVRTSGPRAVEKSCLMFSRPGALRAVGTAGLVHGFLMDRLT 100

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G  +D+ +  V+     +TGE++ EF  HG +  +  IL  L      R A+PGEF+ RA
Sbjct: 101 GEKVDEVMASVYREGHGYTGEEAVEFSCHGSLDGIKRIL-RLCADTGFRPASPGEFTFRA 159

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F +G++DL +AE++ +L+S+ +   R ++++ + G L S   Q+  ++  I S IE  LD
Sbjct: 160 FIHGRMDLTKAEAVQELVSARSSRARVMALDRLGGALFSRIEQFKQQVLTILSGIEVQLD 219

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           ++E  D     +   + + +     + +  +    G++  +G ++V+ G +NAGKSSLFN
Sbjct: 220 YAE--DEIGGDTGFPVGESIATATALENLAASWHAGQLYGSGARVVLAGATNAGKSSLFN 277

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K + AIV+DI GTTRD L ++ +++G  V++ DTAG+RE+ D +E EG++RT   +E
Sbjct: 278 LLLKDERAIVSDIHGTTRDYLEVEAEIDGIPVRLYDTAGLRESADTIEGEGMRRTMHLME 337

Query: 298 NADLILLLKEIN----SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
            AD+I+L+K+ +    S++E     +   I +  KSDL S   E     IS   GEG+  
Sbjct: 338 QADIIVLVKDGSVEKQSQEEYIHEDDNRLIVVHNKSDLRSKPLELSGLWISVKKGEGISA 397

Query: 354 LINKIKSILSNKFKKL--PFSIPSHKRHLYHL-SQTVRYLEMASLNEKDCGLDIIAENLR 410
           L+  I   L ++  +      +    R    L +        A+++     LDI+A  L 
Sbjct: 398 LVEAIALRLRSRVPENGDEALVIESNRQRDGLYAAAQALRRAAAMDASGVPLDIVAAELH 457

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A  SLG++TG V  E +L+ IFS FC+GK
Sbjct: 458 AALRSLGELTGEVTSEDVLERIFSGFCVGK 487


>gi|78778577|ref|YP_396689.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9312]
 gi|123554736|sp|Q31CZ2|MNME_PROM9 RecName: Full=tRNA modification GTPase mnmE
 gi|78712076|gb|ABB49253.1| tRNA modification GTPase trmE [Prochlorococcus marinus str. MIT
           9312]
          Length = 460

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 162/444 (36%), Positives = 236/444 (53%), Gaps = 23/444 (5%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRILDKGLLIVFP 70
               ++IIR+SG      C+ I + K  +  + S R F G        + +D+ L++V  
Sbjct: 21  GKGGVAIIRVSGKDSINSCKKIVQTKSKYAWE-SHRVFHGFILENKQNKFIDEVLILVMK 79

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-LRLANPGEFSRRAFENGKIDLLEAE 129
           SP SFTGED  E H HGGI +VN +L+ L    + +RLANPGEFS+RAF NGKIDL +AE
Sbjct: 80  SPNSFTGEDVVELHCHGGIILVNKVLQRLLSSNSRVRLANPGEFSQRAFLNGKIDLTQAE 139

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           S+  LI++       L+  G+ G++        + L +    IEA +DF E  D  +F  
Sbjct: 140 SINQLINASNTRSAELAFSGVQGKIKKKINDIKNDLINQLCEIEARVDFEE--DFTDFDY 197

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            + L +I  +K  I   I   K    I NG  I ++G +N GKSSL N LAKK+ AIVT+
Sbjct: 198 NKYLKNIKKVKEKIELLIENAKRNSYIHNGISIALIGKTNVGKSSLLNLLAKKEKAIVTN 257

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI- 308
           IPGTTRDV+ ++L +    +KI DTAGIRET + +E  GIK++F +++ +D I+ +  + 
Sbjct: 258 IPGTTRDVIEVNLTINDIPMKIIDTAGIRETHEQIESIGIKKSFRKIKESDFIIYIYSLE 317

Query: 309 ------NSKKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFTGEGLEELINK 357
                 + K     PK      +G K DL       +   +   L+S    +G   LI+ 
Sbjct: 318 EGFNKEDKKIIQEIPKEKLITILGNKKDLIDCKNINSNELKNTILMSIKNNDGERLLIDT 377

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSL 416
           I        +    +I  ++RHL +LS  +  L    +  K+    D+++  LR    +L
Sbjct: 378 IIKK-CGLKQVENINIFLNERHLTNLSSCLSNLNDTDVIIKNKLPFDLLSIELRDGIQNL 436

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            KITG    E+LLD IFSKFCIGK
Sbjct: 437 SKITGQELTEELLDNIFSKFCIGK 460


>gi|19114056|ref|NP_593144.1| mitochondrial GTPase (predicted) [Schizosaccharomyces pombe 972h-]
 gi|14194952|sp|Q9UTE7|MSS1_SCHPO RecName: Full=tRNA modification GTPase mss1, mitochondrial; Flags:
           Precursor
 gi|6433990|emb|CAB60697.1| mitochondrial GTPase (predicted) [Schizosaccharomyces pombe]
          Length = 496

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 163/479 (34%), Positives = 259/479 (54%), Gaps = 44/479 (9%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRIL 61
           H+  TI+A+ST    SA++I+R+SGP+  +V + +     P PR ASLR     +   ++
Sbjct: 21  HQIPTIYALSTPPGTSAVAIVRISGPNACKVAKTLAGS-VPKPRIASLRTIKHPVRSEVI 79

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK--MPNLRLANPGEFSRRAFE 119
           DK L++ F  P SFTGED  E  +HGG AVV+  LE + +  +PN+R A PGEFS RAF 
Sbjct: 80  DKALMLYFKKPSSFTGEDVVELQLHGGTAVVDVTLEAIKQSGIPNIRYAKPGEFSERAFY 139

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+ DL + E L D+I+++T  Q   + +   G +  +  +W  KL   R+F+EA +DFS
Sbjct: 140 NGRADLTQLEGLIDVINAQTAEQLYSANKEAHGSIYDICFRWRKKLIEYRAFLEASIDFS 199

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE ++ +  + ++  ++  +K++I +HI  GK  E++R G  + ILG SNAGKSSL N L
Sbjct: 200 EEHELDDIETIKLFEELNEMKDEIDAHIEGGKCKEVLRKGINVAILGPSNAGKSSLINLL 259

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV--EKEGIKRTFLEVE 297
           A + ++IV+   GTTRD + + +D+ G+ V +SDTAG+R+ +D+   EK GI+      E
Sbjct: 260 ANRRISIVSPQSGTTRDAIEVLVDINGFPVLLSDTAGLRKGEDVQEIEKIGIEIAKARAE 319

Query: 298 NADLILLLKEIN---------SKKEISFPKNI-----DFIFIGTKSDLYSTYT------- 336
            + L L +  IN           + +   K+         F+  K D  S YT       
Sbjct: 320 ESQLTLFVFPINYHSFSESLKQSEILETIKDCLRQRKPIHFLINKVDCVSDYTTMFKPIK 379

Query: 337 ----------EEYDHLISSFTGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLY 381
                     E   H +S  T EGL + +  + S            K+  ++  ++R   
Sbjct: 380 AYLQKNFLIPENRIHAVSCKTKEGLIDFLQALSSTFECMVNPLTNNKIQANLGWNERQRQ 439

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LS       ++   +K   + + AE ++LA+  +G++TG VD+E +  +IFSKFC+GK
Sbjct: 440 CLS--SCSSHLSLALQKSSDIVVAAEEVKLATEDIGRVTGAVDMENVFSVIFSKFCVGK 496


>gi|281357768|ref|ZP_06244254.1| tRNA modification GTPase TrmE [Victivallis vadensis ATCC BAA-548]
 gi|281315715|gb|EFA99742.1| tRNA modification GTPase TrmE [Victivallis vadensis ATCC BAA-548]
          Length = 442

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 227/448 (50%), Gaps = 17/448 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           +  + I A +TG    AI+I+RLSGP    +   + + +             G  G   D
Sbjct: 2   NTFDNIAAPATGIG-GAITILRLSGPDALAIGGRVWRSRTSLAEAPPRTMLLGKVGP--D 58

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
             L +   +P S+TG+D  E H HGG A     L+ L      R+A PGEF+ RAF NGK
Sbjct: 59  PALAVYMKAPASYTGDDVVELHCHGGAAAAEQALK-LVLASGCRMAEPGEFTFRAFVNGK 117

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL++AE++ D+IS+ ++M  +L+ + ++G LSS      ++L ++R+  E+ LDF +EE
Sbjct: 118 LDLVQAEAVGDVISAGSDMAFKLAEKQLAGALSSRLETLYEELNNLRAEAESHLDFPDEE 177

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                   E +     + N++   ++   +G  +R+G  +VI G  NAGKSSL N L   
Sbjct: 178 LAWEEGVPERI---RAVANELKRLLATRGIGATLRDGVNLVIAGRPNAGKSSLLNRLLGM 234

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVT IPGTTRD +     L G  V+++DTAGIR + D +E+ G++R+   +E A + 
Sbjct: 235 ERAIVTSIPGTTRDTIEASTVLRGLPVRLTDTAGIRSSSDPIEQLGVERSRRSIEGAQVT 294

Query: 303 LLLKEINSKK------EISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSFTGEGLE 352
             L + +  +      E++       I +  K DL         +     IS+ TGEG+E
Sbjct: 295 FWLLDASGDELDLELAEMARHPAPGRIAVWNKLDLAPQRALPELDGPTVRISAKTGEGIE 354

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
           +L++       +  +     +  + RH   L +    L  A+ + +    ++    LR A
Sbjct: 355 KLLDAFAREAVDTPRPELPEVAVNARHARLLEEAAGLLPDAAAHFECGEFELAGLMLRDA 414

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++G+I G      +LD IFS+FCIGK
Sbjct: 415 LHTVGEIIGKTVEPDILDNIFSRFCIGK 442


>gi|291536994|emb|CBL10106.1| tRNA modification GTPase trmE [Roseburia intestinalis M50/1]
          Length = 411

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 132/411 (32%), Positives = 213/411 (51%), Gaps = 19/411 (4%)

Query: 47  KASLRYFFGLDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL 105
             ++ Y    DG  ++D+ ++++  +P+S+T ED+ E   HGG+ V+  +LE + K    
Sbjct: 3   THTIHYGHIKDGDEVIDEVMVVLMRAPKSYTKEDTVEIDCHGGVYVMKRVLETVIK-YGA 61

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           R A PGEF++RAF NG+IDL +AES+ D+I ++ E   + S + +SG LS+   +  +KL
Sbjct: 62  RPAEPGEFTKRAFLNGRIDLAQAESVIDIIHAKNEFALKSSEQQLSGSLSAAVRKVREKL 121

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
            H  +FIE+ LD  E   +  +  + +   +   + +I   ++    G+I++ G   VI+
Sbjct: 122 LHEIAFIESALDDPEHISLDGYP-ETLHGIVEEAQKEIQKLLANSDNGKILKEGISTVII 180

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  NAGKSSL N L  ++ AIVTDI GTTRDVL   ++L G ++ + DTAGIRETDD+VE
Sbjct: 181 GKPNAGKSSLLNTLVGEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDVVE 240

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY 339
           K G+ R    +  ADL + + + +++ +      +   K+   I +  KSDL      E 
Sbjct: 241 KIGVDRAKKYLNEADLAIYVVDTSTQLDENDFEIMELLKDRKAIVLLNKSDLTPVTDSES 300

Query: 340 DHLI--------SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                       S+    G+EE    I+ +    +         ++ RH   L +    L
Sbjct: 301 IRKHLDKKMIAISAKEQTGIEEFEETIREMFFTGEVTFNDEVYITNIRHKTALQEARNSL 360

Query: 391 EM-ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +           D  + +L  A   LG I G    + L++ IFSKFC+GK
Sbjct: 361 NLVVQSILDGMPEDFYSIDLMNAYEELGSIVGEAVEDDLVNEIFSKFCMGK 411


>gi|295111068|emb|CBL27818.1| tRNA modification GTPase TrmE [Synergistetes bacterium SGP1]
          Length = 456

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 151/459 (32%), Positives = 223/459 (48%), Gaps = 22/459 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLD 57
           M+   +T+ A+ST    + I+++R+SG     +   I +   K  P PR   L       
Sbjct: 1   MHAPSDTVAAISTAWGEAGIAVVRVSGSCAVPLARSILRFGPKGFPPPRTMRLAALLDGA 60

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ L + FP P SFTGED  E H HGG  V    LE L +    R+A PGEF+RRA
Sbjct: 61  DNAIDQVLAVHFPGPHSFTGEDVVEVHTHGGTLVAQLCLEGLLRR-GARMAEPGEFTRRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AES+  +I S +E   R +   +SGE S    Q  D+L  ++  +E  LD
Sbjct: 120 FLNGRMDLSQAESVLGIIRSRSEEALRAAARTLSGEFSEFVRQIRDELLTLQGDLEVGLD 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E +         + + +  L+  +     +  LG ++R G ++VI G  N GKSSL N
Sbjct: 180 FPE-DAAPAVDPIGLYDALETLRITLRDLEDRCSLGLLLREGIRVVISGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL K+  AIVT +PGTTRD++   +   G  +++ DTAG+R   D VE  GI+R    ++
Sbjct: 239 ALLKQSRAIVTAVPGTTRDIIEETVTYRGIPIRLVDTAGLRVPSDEVEASGIERARAALK 298

Query: 298 NADLILLLKEINSKKE---------------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
            AD+ L L + ++  E               I      D     T+ DL +   E     
Sbjct: 299 QADICLWLLDGSAPLEDADRDYIRSLGTRESIIVLNKADKALAVTEDDLRAIVPEGRTLA 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
           IS+ TGEGL+ L     + ++     L   +    R L  L      +  A  + E D G
Sbjct: 359 ISAKTGEGLDALKEA-IAAIATAGGALDVGLNVTARQLSELRACAEAIAEAQRVLEADMG 417

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D+ A  L  A  +L +  G    + LLD IFS+FC+GK
Sbjct: 418 QDVTAALLGTARKALERTLGIAADDDLLDSIFSRFCVGK 456


>gi|114769773|ref|ZP_01447383.1| tRNA modification GTPase [alpha proteobacterium HTCC2255]
 gi|114549478|gb|EAU52360.1| tRNA modification GTPase [alpha proteobacterium HTCC2255]
          Length = 432

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 160/438 (36%), Positives = 241/438 (55%), Gaps = 9/438 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            + IFA+++    + +S+IR+SG +     E I +K      K  LR  +  +  ++D+ 
Sbjct: 2   NDIIFALASAKGRAGVSVIRISGDNSITSVEKILRKNLSSNNK-CLRKIYDSNNSVIDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F    SFTG+++ E H HG IAVV+ IL  L+ + N R+A PGEF+R+A ENG +D
Sbjct: 61  LILTFKKSASFTGDETVEIHCHGSIAVVSHILRTLSSLENFRIAEPGEFTRKALENGNLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++ E LADLI SETE QRRL++  M G LS     W   L    S IEA +DF++ ED+
Sbjct: 121 LIQVEGLADLIESETEAQRRLAVRSMDGALSKKVQIWRKDLIRAVSLIEATIDFAD-EDI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + EVL+ I   + +I S I      E IR G+++ I+G  N GKS+L NALA +D 
Sbjct: 180 PTDVTPEVLDLINKTQIEIKSEIDGSFAAERIREGFEVAIVGPPNIGKSTLLNALAGRDA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI +D+ GTTRDV+ + +D+ G+ V + DTAG+RET D VEK G++      +NAD+ + 
Sbjct: 240 AITSDVAGTTRDVIEVKMDINGFAVTLLDTAGLRETTDKVEKIGVELAKTRAKNADIRVF 299

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           +    +  E+     ++ I +  KSDL           IS  +GEGL+ L+  I  IL +
Sbjct: 300 ITHDGTVNELKLKPELNDIIVIGKSDLLDKTD---ILSISGKSGEGLDSLLKIISDILED 356

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGC 422
               +     + +RH   + +  +YL+       D     +  +        +L  + G 
Sbjct: 357 LC--VGAQTATRERHRVAMVKAQKYLDEGKALMVDSLELSEFASSEFHQGIQTLSSLIGS 414

Query: 423 VDVEQLLDIIFSKFCIGK 440
           V VE LLD IFS FC+GK
Sbjct: 415 VGVEDLLDEIFSSFCLGK 432


>gi|15612410|ref|NP_224063.1| tRNA modification GTPase TrmE [Helicobacter pylori J99]
 gi|14195308|sp|Q9ZJG6|MNME_HELPJ RecName: Full=tRNA modification GTPase mnmE
 gi|4155957|gb|AAD06922.1| putative thiophene/furan oxidation protein [Helicobacter pylori
           J99]
          Length = 461

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 141/453 (31%), Positives = 225/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AISII++SG +   + + + +K+   PR A +   F  DG +LDK 
Sbjct: 13  NDTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVCDIFS-DGVLLDKA 71

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 72  LVIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 130

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +  + L  + +  E  +D+SE ED+
Sbjct: 131 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSE-EDI 189

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +   KEV  ++          +      +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 190 PSDFLKEVSFNLEKQIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEER 249

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 250 ALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDIILG 309

Query: 305 LKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 310 VFDLSKPLEKEDFNLMDTLNRTKKPCIVVLNKNDLAPKLELEILKSYLKIPYSILETNTL 369

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+QT   LE A    ++       L++ + 
Sbjct: 370 NSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQTT-ALENAITELQNAKSHLDTLELFSY 428

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 429 HILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 461


>gi|294010016|ref|YP_003543476.1| tRNA modification GTPase [Sphingobium japonicum UT26S]
 gi|292673346|dbj|BAI94864.1| tRNA modification GTPase [Sphingobium japonicum UT26S]
          Length = 427

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 153/437 (35%), Positives = 232/437 (53%), Gaps = 14/437 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDKG 64
           ETIFA+S+GA P+ I+++R+SGP   Q    +     P  R+A L       DG +LD+ 
Sbjct: 3   ETIFALSSGAPPAGIAVVRISGPGAGQALLALAGS-LPPARRARLSSLRDPRDGALLDRA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P++ TGED AE H HGG AV+  + + LA +  LR A  GEF+RRAF NG++D
Sbjct: 62  LVLWFPGPDTATGEDLAELHCHGGRAVIAAVEQALASLQGLRRAEAGEFTRRAFANGRMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L   E L+DL+++ET+ QRR ++    G  S    QW+  L  + +  EA LDFS+E+DV
Sbjct: 122 LNAVEGLSDLLAAETQQQRRAALLMAEGHFSQRVEQWLRTLLDLSAMTEAALDFSDEDDV 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +   +  +   + +  +    +      E +R+G ++V+ G  NAGKS+L N L  +D 
Sbjct: 182 PDHGIETRIGQGVRILAEDVRAVLASPSAERLRDGVRVVLAGPPNAGKSTLLNRLVGRDA 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIV+D+ GTTRD + +   L G     +DTAG+R ET D +E  GI R    +E AD+IL
Sbjct: 242 AIVSDVAGTTRDRIEVPAALGGTAFLFTDTAGLRGETGDAIEAIGIDRARGALEAADIIL 301

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
            L   +           D I I  + D ++   +     +S+ TGEG++ L + +     
Sbjct: 302 WLGPADE------APREDAIVIAAQCDRHAK-ADRPGLPLSAVTGEGMDRLASMLLERA- 353

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
                       H+R     ++   +L  A        L I+AE LR A  ++  +TG  
Sbjct: 354 AMLLPGEGDYALHQRQREGAARLHAHLTSAQ---GSDDLLIVAEELRQARHAIDLLTGRA 410

Query: 424 DVEQLLDIIFSKFCIGK 440
             E +LD +F+ FCIGK
Sbjct: 411 GTEDMLDRLFAGFCIGK 427


>gi|297380695|gb|ADI35582.1| tRNA modification GTPase TrmE [Helicobacter pylori v225d]
          Length = 461

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 138/453 (30%), Positives = 223/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AIS+I++SG +   + + + +K+   PR A +R  F  +G +LDK 
Sbjct: 13  NDTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKA 71

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 72  LVIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 130

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+  
Sbjct: 131 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIP 190

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +F ++  LN    +       +           G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 191 SDFLNEVSLNLEKQI-ASFKDLLDFSNTQRQKNKGHALSIVGKPNAGKSSLLNAMLLEER 249

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D++L 
Sbjct: 250 ALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIVLG 309

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 310 VFDLSKPLEKEDFNLIDALNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETNTL 369

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L++ + 
Sbjct: 370 NSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQ-KTALENAIFELQNAKNHLETLELFSY 428

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 429 HLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 461


>gi|219847583|ref|YP_002462016.1| tRNA modification GTPase TrmE [Chloroflexus aggregans DSM 9485]
 gi|219541842|gb|ACL23580.1| tRNA modification GTPase TrmE [Chloroflexus aggregans DSM 9485]
          Length = 452

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 151/456 (33%), Positives = 225/456 (49%), Gaps = 25/456 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFF--GLDGRIL 61
            +TI A++T      I IIRLSGP    +   I +  +P   R   +RY    G DG ++
Sbjct: 2   SDTIAAIATPPGEGGIGIIRLSGPDAQSIAVKIFRPIRPGRLRSHRVRYGHVIGPDGNVI 61

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ LL    +P SFT ED  E   HGG   V     E A     RLANPGEF+ RAF NG
Sbjct: 62  DEALLTFMAAPHSFTREDVIEISCHGGALPVQLT-LEAALAAGARLANPGEFTMRAFLNG 120

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE+  D+I ++T     ++   + G L+         L    ++I A +DF E 
Sbjct: 121 RIDLSQAEATLDVIRAQTSAGLAVAQAQLGGWLAREVRVARAALLEPLAYITALIDFPE- 179

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +    + V   I      +   ++  + G ++RNG ++ ++G  N GKSSL NAL +
Sbjct: 180 ---EGIEPQAVAAPIAQALATVERLLASAEQGIVLRNGARVALVGRPNVGKSSLLNALLR 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            + AIVT IPGTTRD L    +L G  V + DTAG+R + D VE+ G++R    + +ADL
Sbjct: 237 VERAIVTPIPGTTRDTLEETANLAGVPVVLIDTAGMRNSTDPVEQIGVERAAAALASADL 296

Query: 302 ILLLKEI------NSKKEISFPKNIDFIFIGTKSD---LYSTYTEEYDHL-----ISSFT 347
            LL+ +         +  ++   +   I +  K D   +      E+ H       S+  
Sbjct: 297 ALLVFDAQQPLTDEDEAMLTTTADKPTIIVWNKCDDPAILPPTAPEHPHRVAVAACSARY 356

Query: 348 GEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDI 404
           G G++EL   I + L         +  + S+ RH   L +   YL  A      +   D+
Sbjct: 357 GHGIDELAKTIATTLLGGTLPAVGATHLVSNPRHRAALRRAAEYLRAAQETLNTNAATDL 416

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A +L  A+ +LG+ITG    E LLD+IFS+FCIGK
Sbjct: 417 LAADLTGATNALGEITGETVGEDLLDVIFSRFCIGK 452


>gi|149197584|ref|ZP_01874634.1| tRNA modification GTPase [Lentisphaera araneosa HTCC2155]
 gi|149139154|gb|EDM27557.1| tRNA modification GTPase [Lentisphaera araneosa HTCC2155]
          Length = 452

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 135/454 (29%), Positives = 226/454 (49%), Gaps = 20/454 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLD-GR 59
           + +TI A++T     +I+IIR+SG     V + + + K       R+  L      +   
Sbjct: 2   DHDTIAALATAPG-GSIAIIRVSGLDALSVAKKVWRGKTNLENNERRLVLGQMIDPETQE 60

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
             D+ + +    P+++TGED  EF  HGG       L    K         GEF++RAF 
Sbjct: 61  PGDQAMAVYMKGPQTYTGEDVVEFQCHGGNFTAKHTLMCTLKAGARAA-EAGEFTKRAFV 119

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DL +AE++ D+IS+ +E   ++++  ++G   +      D L+ + +  E  +DF 
Sbjct: 120 NGKLDLTQAEAVMDVISAGSEKAMQIAVNQLNGRFGNEIRSMYDGLSDLLAECEVRMDFV 179

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + ED+     + +   +      ++  +   K GE++R+G K++I G  NAGKSSL N +
Sbjct: 180 D-EDLNWTPPETMNKTLNDASTLMAKLLEGRKDGEVLRDGVKVIIGGPPNAGKSSLMNHV 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AIVTDI GTTRD L     + G  +KI+DTAGIRE +DIVE+ GI+R+   ++ A
Sbjct: 239 LGRDRAIVTDIAGTTRDTLEEYTRIRGIPLKITDTAGIREAEDIVERTGIERSKQALKEA 298

Query: 300 DLILLLKEINSKKEISFP-----KNIDFIFIGTKSD------LYSTYTEEYDHL--ISSF 346
            LIL L +++   E   P      +   I I  KSD      L S + + +     +S  
Sbjct: 299 QLILWLMDLSRPLEDQLPPEDFKSDAPLIVILNKSDIALEQELPSYFNQSHVSHVRVSVK 358

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
           + + L  L + I+  +  +       +  + RH   L Q V+ ++           ++++
Sbjct: 359 SEDNLNRLYDLIEEAVWQEDHHHIPDVAVNARHGVLLEQAVQQIDDCQACIDGEAWELVS 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LR A   LG+I G   +  +L  IF ++CIGK
Sbjct: 419 VHLRGALDPLGEILGLTLMPDILHTIFGRYCIGK 452


>gi|317181135|dbj|BAJ58921.1| tRNA modification GTPase TrmE [Helicobacter pylori F32]
          Length = 450

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 138/453 (30%), Positives = 224/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AIS+I++SG +   + + + +K+   PR A +R  F  +G +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQVCLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+  
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIP 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +F  +  LN    +       +    + +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 180 SDFLDEVSLNLEKQI-ASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D++L 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADTIERLGIEKSLKSLENCDIVLG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQ-KTALENAIFELQNAKNHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450


>gi|198282180|ref|YP_002218501.1| tRNA modification GTPase TrmE [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667012|ref|YP_002424545.1| tRNA modification GTPase TrmE [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198246701|gb|ACH82294.1| tRNA modification GTPase TrmE [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519225|gb|ACK79811.1| tRNA modification GTPase TrmE [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 451

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 158/455 (34%), Positives = 247/455 (54%), Gaps = 19/455 (4%)

Query: 1   MNHEK-ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK---KKPFPRKASLRYFFGL 56
           M++++ +TI A++T      + I+R SGP    +   +C +   K   PR A  R F+  
Sbjct: 1   MDYQQGDTIVAIATPPGEGGVGILRFSGPQAPSIATALCGRRSAKPLTPRHAHFRRFYAR 60

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           DG ++D G+++ FP+P S+TGE   E   HG    +  +L E A     R A  GEFS R
Sbjct: 61  DGSLIDHGIVLYFPAPNSYTGETVVELQGHGSPLALASLLTE-AIALGARAARAGEFSER 119

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG++DL +AE++ADLI + ++ Q R +   + G  S        +L  + +  EA L
Sbjct: 120 AFLNGRLDLAQAEAVADLIHARSDAQARAAAASLEGAFSQAVDDIHGQLLRLLALAEAGL 179

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DFSE ED+ +  ++ + + ++ L   ++  + Q + G  +  G ++V+ G  N GKSSL 
Sbjct: 180 DFSE-EDLGDAHAQAISDSLVRLDAQVAHLLKQAQQGARLARGGRVVLAGRPNVGKSSLM 238

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA+++ AIVT IPGTTRD+L  ++ L G  V++ DTAG+RE  D VE EG+ R    +
Sbjct: 239 NALARRESAIVTAIPGTTRDLLREEIILGGLPVELVDTAGLREATDAVEAEGVARARNIL 298

Query: 297 ENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS----TYTEEYDHLISSF 346
            +A LILL+ + ++  +      +          I  K DL S    T T E    +S+ 
Sbjct: 299 HSAQLILLVADASTGWQSEDEVILRDLPEGPRRIIWNKMDLVSAPPATPTGEEAITLSAQ 358

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDII 405
           TG GL+ L   +   L  +    PFS  + +RH+  L      L +A    +     +++
Sbjct: 359 TGAGLDTLHCSLIEALGVQGDSCPFS--ARRRHVEALESCAHRLGIAGDTLRLGDAPELV 416

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A++LR A+ +L  ITG +DVE +L  IFS+FCIGK
Sbjct: 417 AQSLREAAAALAGITGHMDVEDILGEIFSRFCIGK 451


>gi|292669286|ref|ZP_06602712.1| tRNA modification GTPase TrmE [Selenomonas noxia ATCC 43541]
 gi|292649127|gb|EFF67099.1| tRNA modification GTPase TrmE [Selenomonas noxia ATCC 43541]
          Length = 458

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 138/459 (30%), Positives = 234/459 (50%), Gaps = 24/459 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP------FPRKASLRYFFGLD 57
            ++TI   +T      I IIR+SG     +   + +           P  A   +    D
Sbjct: 2   TEDTISQTATAPGAGGIGIIRMSGVQALPIARRVFRPAAGGVLGDMAPYTARYGHITAAD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ++D+ +L+   +P S+TGED+ E   HGG  V+  +L    +    R A  GEF++RA
Sbjct: 62  GSVIDECILLYMRAPHSYTGEDTVELQCHGGRVVLRAVLLRTWEA-GARPAEAGEFTKRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL  AE + +LI++++      +   + G  S+       +L    + IEA +D
Sbjct: 121 FLNGRLDLARAEGVMELITAKSARAAHAARARIEGAFSAEITAVRQRLLGAIARIEAGID 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E +D+    +  +  D+      +   ++    G ++R G K VI+G  N GKSSL N
Sbjct: 181 FPE-DDLPEVHTAALSADVEEASAAVRRLLAGADAGRVLREGVKTVIVGRPNVGKSSLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL   + AIVTD+PGTTRDV+  ++ +EG  +++ DTAG+R  +D VE+ G++RT   + 
Sbjct: 240 ALLGMERAIVTDVPGTTRDVIEEEIIVEGIPLRLLDTAGLRAAEDAVEQIGVRRTEEHLA 299

Query: 298 NADLILLLKEINS------KKEISFPKNI--DFIFIGTKSDLYSTYT------EEYDHLI 343
           +A+LIL + + ++      +  ++  +N   D + +  K D  +  T      +     I
Sbjct: 300 DAELILAVFDASAALTDEDRDLLARLQNTAADILVLCNKEDRSAVLTAADFALDAPVLTI 359

Query: 344 SSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401
           S+  G GL+ L   I + ++ +  +L   ++P+ +R +  L +   +L E A+    D G
Sbjct: 360 SAREGTGLDALRAAIAARVATREGELSDGALPNKEREVDALRRAAGHLDEAAAALAADMG 419

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D ++ +LR A   LG+I G      L+D IFS+FCIGK
Sbjct: 420 TDFVSIDLRAAYDILGEILGETADTDLIDRIFSEFCIGK 458


>gi|15828484|ref|NP_325844.1| tRNA modification GTPase TrmE [Mycoplasma pulmonis UAB CTIP]
 gi|21363023|sp|Q98RJ5|MNME_MYCPU RecName: Full=tRNA modification GTPase mnmE
 gi|14089426|emb|CAC13186.1| THIOPHENE AND FURAN OXIDATION PROTEIN THDF [Mycoplasma pulmonis]
          Length = 442

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 147/445 (33%), Positives = 240/445 (53%), Gaps = 13/445 (2%)

Query: 5   KETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
            + I A+S+GA +  AISIIRLSGP  F++ + I   K    +  +  Y    D  I+D+
Sbjct: 2   FDNIVAISSGAKVNQAISIIRLSGPDVFEIMKKIFTGKVGKDKSITYGYIKN-DQEIIDE 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L++ F  P +F GED+ E + HGGI V   ILE +      RLA PGEFS+RAF NGK+
Sbjct: 61  VLVMWFKGPNNFVGEDTVEINAHGGIVVSTLILETIV-ANGARLAEPGEFSKRAFLNGKL 119

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE++ DLI S+T  Q +++++    + S      I+KL  I    E ++D+ E +D
Sbjct: 120 DLVKAEAINDLIHSKTVQQAKINIKKFDRKTSMFINDLINKLVFIIGTCEVNIDYPEYDD 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++  + + +L  +  L+ +IS  +   +   I  N   I I+G  N GKSSL NAL ++D
Sbjct: 180 IEELTLEVLLPKLKDLEKEISKAVELSERSRIYFNEIPIAIVGRPNVGKSSLLNALLEED 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +IVT+I GTTRDV+     L G    + DTAGIR +++++EK GI+++F +++++++I+
Sbjct: 240 KSIVTNIEGTTRDVVEARFVLNGINFLLKDTAGIRHSENVIEKIGIEKSFKQIQDSEIII 299

Query: 304 LLK------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            L       +   +K     +   +I +  K DL S    + D +  S     + EL   
Sbjct: 300 HLVLENQDEDDFERKIKELSEGKKYIRVINKKDLISKDKIKKDQIYISALKGEISELEKA 359

Query: 358 IKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVS 415
           I  +   +   L    +  + R L  +  ++  ++ A    E+    D++  ++  A   
Sbjct: 360 I--LFEYQNIDLDDFRMIQNTRQLALIKSSLFSIQEAIKGLEQGYTPDVVIVDITKAWED 417

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           L  I G  D E+LLD +FS FC+GK
Sbjct: 418 LVNIVGRADNEKLLDSMFSNFCLGK 442


>gi|224418482|ref|ZP_03656488.1| tRNA modification GTPase TrmE [Helicobacter canadensis MIT 98-5491]
 gi|253827795|ref|ZP_04870680.1| tRNA modification GTPase [Helicobacter canadensis MIT 98-5491]
 gi|313142012|ref|ZP_07804205.1| tRNA modification GTPase TrmE [Helicobacter canadensis MIT 98-5491]
 gi|253511201|gb|EES89860.1| tRNA modification GTPase [Helicobacter canadensis MIT 98-5491]
 gi|313131043|gb|EFR48660.1| tRNA modification GTPase TrmE [Helicobacter canadensis MIT 98-5491]
          Length = 461

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 137/464 (29%), Positives = 238/464 (51%), Gaps = 27/464 (5%)

Query: 1   MNHE-KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGLD 57
           MN    +TI A +T    S++++IRLSG     +   + K        R A L   +  +
Sbjct: 1   MNSNINQTIVAPATTYGKSSLNVIRLSGQDSLLIASKLAKVNPNHFKVRYAKLTKIYFQN 60

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G +LD+ +LI F +P S+T ED  EF  HGG  +   ILEE  K+   RLA PGEF++RA
Sbjct: 61  GELLDECILIYFKAPHSYTTEDVIEFQCHGGTFIAQSILEECIKL-GARLAKPGEFTKRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F  G+IDL +A+++A LI S      ++ M  ++GE+ S        L  + +  E  +D
Sbjct: 120 FLGGRIDLSQAQAIAKLIESSNANAHKMLMRHLNGEMYSFCENLRKNLLTLLAHSEVFID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +++ E +     + +LN +      + + + Q    + +  GY++ I+G  N GKSSL N
Sbjct: 180 YAD-EALPQDLMENLLNRLDSTLQTLQNLLEQSIQKKSLFEGYRLCIIGKPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           AL  +D AIV+DI GTTRD +  +  LEG+L+++ DTAGIR++ DI+E +GI+R+  + E
Sbjct: 239 ALLHEDRAIVSDIAGTTRDSIEENFLLEGHLLRLIDTAGIRQSQDIIETKGIERSLQKAE 298

Query: 298 NADLILLLKEINSKKEISFPK----------NIDFIFIGTKSDLYSTYT----EEYDHLI 343
            +D+++ L + +   E    K          +   I +  K+DL  ++       ++ L 
Sbjct: 299 QSDILIALFDSSRPLEEEDLKIIEILKTYQDSKKIIVLLNKTDLKGSFDTQILAPFNPLN 358

Query: 344 SSFTGEG-------LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                +        L    N + S+L+++ +     +   +     +   ++ L  + L 
Sbjct: 359 LCLKDDNLASNNSLLSHFKNHLISLLNSQ-ESSQMLLLVSQYQFQAIQACIQALYDSKLP 417

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++  L++ + ++  A  +L  IT   +  Q+LD++FS FC+GK
Sbjct: 418 LENGELELFSFHINEALKALASITKPYEYSQMLDVMFSDFCLGK 461


>gi|115252797|emb|CAK98233.1| putative trna modification gtpase protein [Spiroplasma citri]
          Length = 449

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 145/448 (32%), Positives = 251/448 (56%), Gaps = 13/448 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A +T  +  AI+IIR+SG   +++   +  KK           +      I+D+ 
Sbjct: 3   EDTIIAPATAMVKQAIAIIRMSGVDSYKIINKVFSKKVIQEGNQIYYGYLRDGKEIIDQV 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +L  F  P SFTGED  E + HGG+ V N I++ L K    RLAN GEFS+RAF NGK++
Sbjct: 63  ILFCFQKPNSFTGEDIIEINCHGGVLVTNNIIKLLLK-NGARLANKGEFSQRAFLNGKLN 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++ +++ +L+++  +   ++++  +  + + L   + D+L  I + IE ++D+ E + V
Sbjct: 122 LIQTDAINNLVNATNDTSAKIALNNLQNKNTYLISTYRDELLDIIANIEVNIDYPEYDGV 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            + +++E+   +L L+  I+  +   K+G++I +G  ++ILG  N GKSSL NAL  ++ 
Sbjct: 182 GDLTTQELNQRLLILEQKINDLVKISKVGKMIDDGINVLILGKPNVGKSSLLNALMNENK 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+++PGTTRD++   ++L    + I DTAG+RET D +E+ GI++   +V NADLIL+
Sbjct: 242 AIVSELPGTTRDIVEGKINLGPLTLNIIDTAGLRETVDKIEQIGIEKARQQVINADLILI 301

Query: 305 LKE-----INSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEYDHLI----SSFTGEGLEEL 354
           + +     IN   E+    KN +++ +  K+DL +  T++ +        S     ++ L
Sbjct: 302 VADNYADLINLNLELKELIKNKEYLLVLNKTDLLNMQTQKKNLQQNILLISALKRDIKSL 361

Query: 355 INKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDIIAENLRLA 412
           I+KI ++    +  K    + S+ + +  L +    ++ A  N      +DII  +L  A
Sbjct: 362 IDKILNLYKTAQITKDDQLVLSNIKQISLLEKVANSIKNAYNNSTSGFPVDIINVDLHEA 421

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LG I G    E LL  IFSK+C+GK
Sbjct: 422 WEILGDILGENYEEDLLTTIFSKYCLGK 449


>gi|223040362|ref|ZP_03610637.1| tRNA modification GTPase TrmE [Campylobacter rectus RM3267]
 gi|222878320|gb|EEF13426.1| tRNA modification GTPase TrmE [Campylobacter rectus RM3267]
          Length = 439

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 134/444 (30%), Positives = 227/444 (51%), Gaps = 14/444 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI AV+T     +ISIIRLSG     +   + K     PR A+L   +  +G ++D+ 
Sbjct: 2   NDTIAAVATAHGVGSISIIRLSGADALSLALKLTKITSLVPRYATLTKIYA-EGELIDEA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LLI F +P SFTGED  EF +HGG+ V N IL EL K    RLA  GEFS+RA  NGK+D
Sbjct: 61  LLIYFKAPHSFTGEDVVEFQLHGGLVVANLILGELIK-NGARLARAGEFSKRALINGKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
             + E++  LI++++E   ++    M G+L+    +   +L    +F+E  +D+++ +D+
Sbjct: 120 FSKIEAINSLINAKSEDSVKIIARTMRGDLAKFANEIRSELVKTLAFVETSIDYAD-DDL 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                + +   +      +   ++  +  + +  G+KI I+G  N GKSS+ N+L   D 
Sbjct: 179 PADLLESISQMLKQNSVKLDKIVAISQSRKGLLEGFKIAIVGKPNVGKSSILNSLLSFDR 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI++D  GTTRD +   L +  +LV+I DTAGIR+    +E+ GI  +   +E AD+IL 
Sbjct: 239 AIISDEAGTTRDSIEEALKIGTHLVRIIDTAGIRKNAGKIEQIGISYSLRAIEEADVILA 298

Query: 305 LKEINSKKE------ISFPKN--IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + + + + +      +   KN      ++  K DL   +    + +      +G  E+IN
Sbjct: 299 VFDASQEADEQDSEILELLKNSQKKIFYVLNKCDLGVKFASPGNPIKICAK-QGTGEVIN 357

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
            +K+ L    ++    + +  R +         ++ A     +  L++ A  L  A   +
Sbjct: 358 SLKTYL--DAQETSEILLNSTRQISSCEAASEAIKRALNLLAESELELFAYELNTAIEQI 415

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
             IT   +  ++LD +FS FC+GK
Sbjct: 416 SSITKPFERSEILDEMFSNFCLGK 439


>gi|227810186|gb|ACP41240.1| tRNA modification GTPase [Actinobacillus minor]
          Length = 420

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 138/423 (32%), Positives = 233/423 (55%), Gaps = 21/423 (4%)

Query: 21  SIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDS 80
            I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTGED 
Sbjct: 1   GILRVSGPLANEVAKAVVGKEL-KPRLANYLPFMDTDGTVLDQGIALFFKAPNSFTGEDV 59

Query: 81  AEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETE 140
            E   HGG  +++ +L+ + ++  +R+A  GEFS +AF N K+DL +AE++ADLI + +E
Sbjct: 60  LELQGHGGQVILDLLLKRILEVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDATSE 119

Query: 141 MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
              R +++ + GE S+   + +D + ++R+++EA +DF + E++   +  ++   +  + 
Sbjct: 120 QAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPD-EEIDFLADGKIEAKLNDII 178

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
             +++   + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTTRDVL  
Sbjct: 179 TQLANVRKEAKQGSILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTRDVLRE 238

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------- 313
            + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL+ + + ++        
Sbjct: 239 HIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQADVFKTEW 298

Query: 314 ----ISFPKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFTGEGLEELINKIKSILS 363
                  P+NI    I  K DL   S   E+ D      +S+ T  G++ L   +K  + 
Sbjct: 299 AEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTLIRLSAQTKVGVDLLREHLKQSMG 358

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSLGKITGC 422
            +         + +RHL  L     +LE   +        +++AE LR+   +L +ITG 
Sbjct: 359 YQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAGELLAEELRMVQNALSEITGQ 417

Query: 423 VDV 425
              
Sbjct: 418 FTS 420


>gi|45656065|ref|YP_000151.1| tRNA modification GTPase TrmE [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|73919887|sp|Q72VY6|MNME_LEPIC RecName: Full=tRNA modification GTPase mnmE
 gi|45599298|gb|AAS68788.1| tRNA modification GTPase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 456

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 158/459 (34%), Positives = 241/459 (52%), Gaps = 27/459 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKK------PFPRKASLRYFFGLD 57
            +TI AVST +   AI IIR+SGP    +   F+  K K        PR A    F   D
Sbjct: 2   NDTIAAVSTSSGAGAIGIIRMSGPEALTISSSFLFSKNKFLSPSEILPRTAIQCVFQIGD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            R +D+ L   F SP S+TGED  EFH HG   ++   L+ + +    R A  GEFSRRA
Sbjct: 62  -RKIDQILFFYFKSPNSYTGEDLCEFHFHGNPILLREALDAIFRA-GARPAKQGEFSRRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K+DL E E++  LIS+ +  +  L+ + + GE++        +L  +++  EA++D
Sbjct: 120 FLNEKLDLTEVEAIGRLISARSRFELELAQKNVFGEVTRFTSNLRSQLISLKAECEAEID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FS  ED+   S +E    I  +K+   + IS+    E +   ++IV+ G  N GKSSL N
Sbjct: 180 FS-TEDLTYESLEERKTRIENVKSLCQTLISKSSSAEKLIQQFRIVLYGEPNTGKSSLMN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  K+ +I+++IPGTTRD ++ ++ LEG  V++ DTAG+RET D +EK GI+R+  E +
Sbjct: 239 VLLGKERSIISEIPGTTRDYISEEIFLEGIPVRLVDTAGVRETTDHIEKLGIERSEKEFQ 298

Query: 298 NADLILLLKEINSKKEI------SFPKNIDFIFIGTKSD---------LYSTYTEEYDHL 342
           +AD+ L L +++ K+        S  +    I I  K D         L+S   +     
Sbjct: 299 SADVRLFLVDVSKKENWKEFINKSRERLEGSILIANKIDILNSSWDRNLFSDVKDLIVLE 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDCG 401
           IS  T EG+  L++ IK   + K       +   +R  YH    VR L+    L ++   
Sbjct: 359 ISCKTKEGISNLLDAIKER-TGKLGHSEDYVLLEERQRYHFETIVRCLDKTLHLLKEGAP 417

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +I  + +  A   +G++ G VD E++L  IFSKFC+GK
Sbjct: 418 AEIYIQEINYALAEIGEVNGKVDTEEVLGRIFSKFCVGK 456


>gi|254995465|ref|ZP_05277655.1| tRNA modification GTPase TrmE [Anaplasma marginale str.
           Mississippi]
          Length = 411

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 156/417 (37%), Positives = 233/417 (55%), Gaps = 18/417 (4%)

Query: 35  EFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNG 94
           + +  K+    R A+ +  +    + +D+ +++ FP P SFTGED  E  VHG +AV+  
Sbjct: 2   QLLGVKEPVRSRVATCKTLYDKKRQPIDQAVVLYFPGPGSFTGEDVVELQVHGSLAVIRL 61

Query: 95  ILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL 154
           + EEL      R+A PGEFS RAF NGKIDL  AE +ADL++SETE Q R +    SG L
Sbjct: 62  LFEEL--QTVFRIAEPGEFSLRAFLNGKIDLTRAEGIADLVNSETEAQLRQAFAQSSGFL 119

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
             LY +W   L  I S +EA +DF +  DV     + V + +  L N +  H+  G  GE
Sbjct: 120 ERLYEEWRSSLVDILSDLEAYIDFPD--DVSPQILRSVHDRVKELHNSLERHLDDGHRGE 177

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
            +R+G ++ ILG  N GKS+LFN LA++D+AIV++ PGTTRDVL   +D+ GY   + DT
Sbjct: 178 RLRHGMRVAILGKPNVGKSTLFNHLARRDMAIVSEYPGTTRDVLEAHVDIGGYPFIVVDT 237

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTK 328
           AGIRE+ D VE+EGI R   E   AD+ ++L   +        + I    +   I++ +K
Sbjct: 238 AGIRESTDFVEREGIMRAKSEAATADIRIMLFPHSEAGNLGVHEAIEGGDDGKTIYVLSK 297

Query: 329 SDLYST-----YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           +D            +  +L+S  T  G++ L++ +K    + F K    + + +RH  HL
Sbjct: 298 ADSAKEGETRIIEGKQFYLVSVHTNLGVDSLLSALKERAIDGFPKSGDVLITSQRHRGHL 357

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               + +   S    +   +I+AE LRLA+  +GK+TG V  + +LD IF +FCIGK
Sbjct: 358 QSAAKVI---SDITDEMPAEIVAEYLRLATKEIGKVTGAVYGDDILDNIFKRFCIGK 411


>gi|207091818|ref|ZP_03239605.1| tRNA modification GTPase TrmE [Helicobacter pylori HPKX_438_AG0C1]
          Length = 450

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 143/453 (31%), Positives = 226/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T +   AISII++SG +   V + + +K+   PR A +R  F  DG +LDK 
Sbjct: 2   NDTIAAIATPSGKGAISIIKISGHNALNVLKQLTQKQDFTPRYAYVRDIFS-DGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +  + L  + +  E  +D+SE ED+
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNDLLKLLASSEVLIDYSE-EDI 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +   KEV  ++          +      +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 179 PSDFLKEVSFNLEKQIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFNLIETLNRAKKPCIVVLNKNDLAPKLELEILKSHLKIPYSLLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L++ + 
Sbjct: 359 NSKACLKDLGQKISAFFPKLDTQNKLLLTSLAQ-KTALENAITELQNAKNHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|308064209|gb|ADO06096.1| tRNA modification GTPase TrmE [Helicobacter pylori Sat464]
          Length = 450

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 223/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AIS+I++SG +   + + + +K+   PR A +R  F  +G +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+  
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIP 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +F  +  LN    +       +    + +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 180 SDFLDEVSLNLEKQI-ASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L+  + 
Sbjct: 359 NSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQ-KTALENAIFELQNAKNHLETLEFFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  SL  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HLLSAIESLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|254779963|ref|YP_003058070.1| tRNA modification GTPase TrmE [Helicobacter pylori B38]
 gi|254001876|emb|CAX30126.1| tRNA modification GTPase [Helicobacter pylori B38]
          Length = 450

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 142/453 (31%), Positives = 226/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AISII++SG +   + + + +K+   PR A +   F  DG +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVHDIFS-DGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGSPILAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +  D L  + +  E  +D+SE ED+
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARDNLLKLLASSEVLIDYSE-EDI 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +   KEV  ++          +      +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 179 PSEFLKEVSLNLEKQIASFKDLLDFSNTQKQRNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDIILG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKNDLAPKLELEILKSHLKIPYTLLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+QT   LE A +  ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQTT-ALENAIIELQNAKNHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|161170269|gb|ABX59239.1| predicted GTPase [uncultured marine bacterium EB000_55B11]
 gi|297183798|gb|ADI19921.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 432

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 160/438 (36%), Positives = 241/438 (55%), Gaps = 9/438 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            + IFA+++    + +S+IR+SG +     E I +K      K  LR  +  +  ++D+ 
Sbjct: 2   NDIIFALTSAKGRAGVSVIRISGDNSITSVEKILRKNLSSNNK-CLRKIYDSNNSVIDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F    SFTG+++ E H HG IAVV+ IL  L+ + N R+A PGEF+R+A ENG +D
Sbjct: 61  LILTFKKSASFTGDETVEIHCHGSIAVVSHILRTLSSLENFRIAEPGEFTRKALENGNLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++ E LADLI SETE QRRL++  M G LS     W   L    S IEA +DF++ ED+
Sbjct: 121 LIQVEGLADLIESETEAQRRLAVRSMDGALSKKVQIWRKDLIRAVSLIEATIDFAD-EDI 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + EVL+ I   + +I S I      E IR G+++ I+G  N GKS+L NALA +D 
Sbjct: 180 PTDVTPEVLDLINKTQIEIKSEIDGSFAAERIREGFEVAIVGPPNIGKSTLLNALAGRDA 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI +D+ GTTRDV+ + +D+ G+ V + DTAG+RET D VEK G++      +NAD+ + 
Sbjct: 240 AITSDVAGTTRDVIEVKMDINGFAVTLLDTAGLRETTDKVEKIGVELAKTRAKNADIRVF 299

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           +    +  E+     ++ I +  KSDL           IS  +GEGL+ L+  I  IL +
Sbjct: 300 ITHDGTVNELKLKPELNDIIVIGKSDLLDKTD---ILSISGKSGEGLDSLLKTISDILED 356

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGC 422
               +     + +RH   + +  +YL+       D     +  +        +L  + G 
Sbjct: 357 LC--VGAQTATRERHRVAMVKAQKYLDEGKALMVDSLELSEFASSEFHQGIQTLSSLIGS 414

Query: 423 VDVEQLLDIIFSKFCIGK 440
           V VE LLD IFS FC+GK
Sbjct: 415 VGVEDLLDEIFSSFCLGK 432


>gi|310817163|ref|YP_003965127.1| tRNA modification GTPase [Ketogulonicigenium vulgare Y25]
 gi|308755898|gb|ADO43827.1| tRNA modification GTPase [Ketogulonicigenium vulgare Y25]
          Length = 425

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 148/438 (33%), Positives = 227/438 (51%), Gaps = 17/438 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA++T    + +++IRLSGP+     E +     P P              ++D+ L
Sbjct: 2   DTIFALATARGRAGVAVIRLSGPAARTAVEQLAG---PLPVHGRSLRLLREGAEVVDEAL 58

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F    SFTGE   E H+HG  A+V  +L  L    +LR A  GEF+RRA ENG++DL
Sbjct: 59  VLSFDHGRSFTGEVVVELHLHGSPAIVQAVLRILGNNADLRAAEAGEFTRRALENGRLDL 118

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETEMQRR +M    G + +    W  KL    + IEA +DF++ EDV 
Sbjct: 119 AQVEGLADLIDAETEMQRRQAMRIFQGAMGAKANVWRAKLLRAAALIEATIDFAD-EDVP 177

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                EV   ++ +   + + ++   + E +R+G+++ I+G  N GKS+L N LA +D A
Sbjct: 178 VDVRPEVEGLLVDVLIALEAEVAGVSVAERLRDGFEVAIVGRPNVGKSTLLNYLAGRDAA 237

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I + + GTTRDV+ + +D+ G  V + DTAG+RET D VE+ GI R     E AD+ + +
Sbjct: 238 ITSHVAGTTRDVIEVRMDIAGLPVTLLDTAGLRETADEVEQIGIARARSRAELADIRVHI 297

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISS-FTGEGLEELINKIKSILSN 364
              +   E+                L+    E  D    S  TG G++ L   I+  LS 
Sbjct: 298 VAADELPELPIQPGDIV--------LHPRGDETGDVNGISGLTGYGVQRLTGHIEQELSA 349

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGC 422
           +   +   +   +RH   +   +  +        D     D++AE+LRLA  ++  + G 
Sbjct: 350 RVASV--GVAMRERHRLAMVHAITLMAEVIDLLPDAVEKADLVAEDLRLAIRAIDSLVGR 407

Query: 423 VDVEQLLDIIFSKFCIGK 440
           +DVE +L  IFS FCIGK
Sbjct: 408 IDVEDILGEIFSSFCIGK 425


>gi|190348630|gb|EDK41117.2| hypothetical protein PGUG_05215 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 503

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 162/472 (34%), Positives = 253/472 (53%), Gaps = 40/472 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFG-LDGRILDKG 64
           TI+A+ST    +AI ++R+SG     + + + KK+  P PR A++R  +    G  LD  
Sbjct: 34  TIYALSTKMGRAAIGVVRISGSQSRYIYKKLTKKESEPLPRVAAVRNLYSSRSGVQLDNA 93

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFSRRAF 118
           L + F +P ++TGED  E H+HGG AVV  +L+ + ++        +R A  GEFSRRAF
Sbjct: 94  LTLFFQAPHTYTGEDLLELHLHGGTAVVQSVLKAIEELHQPEKQIFIRYAENGEFSRRAF 153

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK DL+E E + ++I +ETE QR  S+  M G  S L+  W  ++    + +   +DF
Sbjct: 154 INGKYDLMEIEGIREMIDAETESQRLASLASMDGSNSGLFRSWRQEIARNVALLTTVIDF 213

Query: 179 SEEEDVQNFS--SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
            E+ D++  S    +V  +I  L++ I  ++ + +  +++ NG K+ +LG  NAGKSSL 
Sbjct: 214 GEDHDIEEVSQLFGQVGANIHQLESSIREYLYRAERSQVLLNGIKLSLLGPPNAGKSSLL 273

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKRTFL 294
           N LA K+ AIV++I GTTRD++ I LD+ GY + I DTAGIR  E  D +EKEGIKR   
Sbjct: 274 NCLASKNAAIVSEIAGTTRDIIDIPLDINGYKIIIGDTAGIRSLEDADTIEKEGIKRAKA 333

Query: 295 EVENADLILLLKEINSK----------KEISFPKNIDFIFIGTKSDLYST---------- 334
               +D++LL+  ++            K+++  K    I +  K DL +           
Sbjct: 334 ASLTSDIVLLVLPVDKPVVDDSFLEHIKQLTQHKK-RIIVVFNKRDLSNETLNKNLLEKY 392

Query: 335 -----YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                  +   H +S  TGEG++ L   + S   N     P  + +  R L        +
Sbjct: 393 SRVFGIEKPLFHFVSCNTGEGIDSLAKSLVSEFQNVTTSDPIIVSTRTRDLLVNDVLHGF 452

Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
            E     +++  + + +E+LR +   +GKITG  V VE++L I+FS FCIGK
Sbjct: 453 KEFQYWRDQE-DVVLASESLRQSVEGIGKITGDAVGVEEILGIVFSSFCIGK 503


>gi|328865434|gb|EGG13820.1| GTP-binding protein 3 [Dictyostelium fasciculatum]
          Length = 640

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 160/486 (32%), Positives = 252/486 (51%), Gaps = 53/486 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---------KKKKPFPRKASLR-YFF 54
           K+TIFA+S+G+  + +++IR+SG S   V + +            K   PR A+L     
Sbjct: 95  KDTIFALSSGSNKAGVAVIRVSGRSSNDVLQRLTMFSSISGDGGTKTIVPRMATLSSIHH 154

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
                 +DK +L+ FP P SFTGED  E HVHGG AVV+  L+ +A +P  R A  GEF+
Sbjct: 155 PQTKEQIDKAMLLWFPQPNSFTGEDVLELHVHGGRAVVHDTLDAIACVPGTRSAVAGEFT 214

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAF+N K+DL E E L+DL+ ++T  QRR+++  M G L+       ++L    ++ EA
Sbjct: 215 RRAFDNNKMDLSEVEGLSDLLDAQTNHQRRVALLQMQGSLAKFTSHLRNRLIRASAYTEA 274

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF ++ ++     +     I  +K  I  H++ G++GE +R G  I I+G  NAGKSS
Sbjct: 275 FIDFGDDAEIDPAVVETSKRAIREIKETIEGHLANGRIGERLREGASIAIVGPPNAGKSS 334

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N LA++  +IV+ IPGTTRDV+ + LD+ GY V I DTAGIR   D +E+EGI     
Sbjct: 335 LINILAQRRASIVSSIPGTTRDVVEVVLDIGGYPVVIGDTAGIRVGQDEIEQEGIVMAKE 394

Query: 295 EVENADLILLLKEINS------------KKEISFPKNIDFIFIGTKS------------- 329
             +++D+ + + + +S               +    N + I +  K+             
Sbjct: 395 RFKDSDISICVFDSSSFFTSGQVGTIIIDPTLLELINSNTIIVFNKTDLLLNNNNDNKQS 454

Query: 330 --DLYS------------TYTEEYDHLISSF-TGEGLEELINKIKSILSNKFK--KLPFS 372
             D+ +              T   +H   S  + +G+++L+  +++ L N F+       
Sbjct: 455 WKDIKTNLLNQIQQQQQSNSTTTINHCEISCSSNQGIKDLLLVLENNLKNLFETSNSDEP 514

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432
           + +  RH  HL   V  L+   L+  +  + I AE LR A   +G I+  V+V+ LLD+I
Sbjct: 515 LLTRLRHKEHLRNCVESLDRF-LDYCEYDVVIAAEELRSAIKEIGAISHHVNVDDLLDVI 573

Query: 433 FSKFCI 438
           F  FCI
Sbjct: 574 FKDFCI 579


>gi|146412448|ref|XP_001482195.1| hypothetical protein PGUG_05215 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 503

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 162/472 (34%), Positives = 253/472 (53%), Gaps = 40/472 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFG-LDGRILDKG 64
           TI+A+ST    +AI ++R+SG     + + + KK+  P PR A++R  +    G  LD  
Sbjct: 34  TIYALSTKMGRAAIGVVRISGSQSRYIYKKLTKKESEPLPRVAAVRNLYSSRSGVQLDNA 93

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFSRRAF 118
           L + F +P ++TGED  E H+HGG AVV  +L+ + ++        +R A  GEFSRRAF
Sbjct: 94  LTLFFQAPHTYTGEDLLELHLHGGTAVVQSVLKAIEELHQPEKQIFIRYAENGEFSRRAF 153

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK DL+E E + ++I +ETE QR  S+  M G  S L+  W  ++    + +   +DF
Sbjct: 154 INGKYDLMEIEGIREMIDAETESQRLASLASMDGSNSGLFRSWRQEIARNVALLTTVIDF 213

Query: 179 SEEEDVQNFS--SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
            E+ D++  S    +V  +I  L++ I  ++ + +  +++ NG K+ +LG  NAGKSSL 
Sbjct: 214 GEDHDIEEVSQLFGQVGANIHQLESSIREYLYRAERSQVLLNGIKLSLLGPPNAGKSSLL 273

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKRTFL 294
           N LA K+ AIV++I GTTRD++ I LD+ GY + I DTAGIR  E  D +EKEGIKR   
Sbjct: 274 NCLASKNAAIVSEIAGTTRDIIDIPLDINGYKIIIGDTAGIRSLEDADTIEKEGIKRAKA 333

Query: 295 EVENADLILLLKEINSK----------KEISFPKNIDFIFIGTKSDLYST---------- 334
               +D++LL+  ++            K+++  K    I +  K DL +           
Sbjct: 334 ASLTSDIVLLVLPVDKPVVDDSFLEHIKQLTQHKK-RIIVVFNKRDLSNETLNKNLLEKY 392

Query: 335 -----YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                  +   H +S  TGEG++ L   + S   N     P  + +  R L        +
Sbjct: 393 SRVFGIEKPLFHFVSCNTGEGIDSLAKSLVSEFQNVTTSDPIIVSTRTRDLLVNDVLHGF 452

Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
            E     +++  + + +E+LR +   +GKITG  V VE++L I+FS FCIGK
Sbjct: 453 KEFQYWRDQE-DVVLASESLRQSVEGIGKITGDAVGVEEILGIVFSSFCIGK 503


>gi|37572951|dbj|BAC98601.1| putative tRNA modification GTPase trmE [Oryza sativa Japonica
           Group]
          Length = 552

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 133/469 (28%), Positives = 230/469 (49%), Gaps = 38/469 (8%)

Query: 7   TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKKKK-------PFPRKASLRYFFGLD 57
           TI A+ T  G  P+A+ I+RLSGP    V   + +  +       P             D
Sbjct: 87  TIAAIVTSLGGGPAAVGIVRLSGPDAAAVAGRVFRPARRAAPPWRPRSHFVEYGVALDRD 146

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
           G ++D+ L++   +P S+T ED  E   HG    +  +L    +    RLA+PGEF+ RA
Sbjct: 147 GGVIDEVLVVPMLAPRSYTREDVVELQCHGNDLCLRRVLRACLEA-GARLADPGEFTVRA 205

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG++DL +AE+++ LIS+++      ++ G+ G  S+L      +   + + IEA LD
Sbjct: 206 FLNGRLDLAQAENVSRLISAKSAAAADSALAGIQGGFSALVKSLRSRCIELLTEIEARLD 265

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F +  ++       +++ I  ++ ++   +      +++++G ++ I+G  N GKSSL N
Sbjct: 266 FED--ELPPLDLTMLVSKINGMRQEVQDALDTANYDKLLQSGLQVAIIGRPNVGKSSLLN 323

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           A +K + AIVT+I GTTRDV+  ++ + G  + + DTAGIRETDDIVEK G++R+     
Sbjct: 324 AWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGIRETDDIVEKIGVERSEAAAL 383

Query: 298 NADLILLL---KEINSKKEISFPKN-----------IDFIFIGTKSDLYSTYTEEYDHLI 343
            ADLI++     +  ++ +    ++           +  + +  K D     + E     
Sbjct: 384 GADLIIMTISAVDGWTEDDTKLIEHVLISKKSSGAPVPMVLVINKVDCAPFISGEQFEQF 443

Query: 344 ----------SSFTGEGLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHLSQTVRYL-E 391
                      + TG+G+ EL   I  +   +           ++R    L +T +    
Sbjct: 444 HGVFKKHVQTCAVTGKGISELEKAIIEVRGLEPVPSEGRRWTVNQRQFEQLLRTQQAFTR 503

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + S   +   +D    +LR A+++L  I+G    E++L  IFSKFCIGK
Sbjct: 504 LESSINEQLPMDFWTIDLREAALALATISGEDISEEVLSSIFSKFCIGK 552


>gi|299135903|ref|ZP_07029087.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX8]
 gi|298602027|gb|EFI58181.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX8]
          Length = 506

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 137/501 (27%), Positives = 229/501 (45%), Gaps = 63/501 (12%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD 57
           + + +TI A+ST      I I+RL+GP    +   + +  +P      R A +      +
Sbjct: 7   SPDVDTIVAISTPPGRGGIGIVRLAGPQSLPIAAQLLQLTQPLEHARARFARVLDSADPN 66

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            + LD  ++  F +P S+TG+D  E   HG   V+  I+   A     RLA PGEF++RA
Sbjct: 67  AKTLDDAIVTAFLAPHSYTGDDLIEIAAHGSPVVLEAIVRA-ALSHGARLATPGEFTQRA 125

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F +G++DL +AE++ DLI+++T  Q R++ + M G +S       + L H+ + +EA +D
Sbjct: 126 FLSGRLDLTQAEAVHDLIAAQTLDQARVAAQQMGGAMSRRVAPAKESLLHLIALLEAGMD 185

Query: 178 FS--EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           F+  E +DV      ++   IL ++  + +  +  + G+++R+G  + ++G  NAGKSSL
Sbjct: 186 FASGELDDVDVVPPSQIEAAILSVQTPLEALAASFRHGQMLRSGASLALVGRPNAGKSSL 245

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR----ETDDIVEKEGIKR 291
           FN L ++D AIVT +PGTTRD +   L L G  +++ DTAG+R       D  E  GI R
Sbjct: 246 FNRLLERDRAIVTPLPGTTRDTVEESLALGGIPLRLIDTAGLRLQGDRPADEAEALGIAR 305

Query: 292 TFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-------------- 331
           +   + +ADL+LL+ +         +   +  +    + +  K DL              
Sbjct: 306 SHEALADADLVLLIHDATQTMTEEERTLAASLEGRPHLLVLNKIDLQGSDFSLKSTAFMS 365

Query: 332 -------------------------------YSTYTEEYDHLISSFTGEGLEELINKIKS 360
                                           +        L S+ TGEGLEEL   I  
Sbjct: 366 KGTNFSSQDTSSSLKGTGFSPYIPTRQSKGALAPEGTPAPILTSALTGEGLEELRTAILR 425

Query: 361 ILSNKFKKLPFSIPSHKRHLYHL-SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
            L  +         ++ R    + +         + N      +++  +L  A  +L  +
Sbjct: 426 ALQAEGALADSGALNNLRQQEAVATTLQALATAQAANINGLPHELMLLDLHAALRALDSL 485

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG    + +L  IFS FCIGK
Sbjct: 486 TGATTTDDILGRIFSTFCIGK 506


>gi|206890795|ref|YP_002249040.1| tRNA modification GTPase TrmE [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742733|gb|ACI21790.1| tRNA modification GTPase TrmE [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 460

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 164/472 (34%), Positives = 247/472 (52%), Gaps = 45/472 (9%)

Query: 1   MNHEKETIFAVSTGALP-----------SAISIIRLSGPSCFQVCEFICKKKKPFP---- 45
           ++ E +TI A+ST                AISI              I    K       
Sbjct: 2   ISSEFDTIAAISTPLGEGGIGIIRISGRQAISI-----------ASKIFHSPKGINLQNV 50

Query: 46  RKASLRYFFGLD---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102
           +  ++ Y F +D      +D+ L+ V  +P ++T ED  E + H G   +  IL+ +   
Sbjct: 51  KTHTIHYGFIIDPSTQERVDEVLVTVMRAPNTYTREDIVEINCHAGYITLKRILD-IVLY 109

Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162
              RLA PGEF++RAF  G+IDL +AES+ DLI ++TE  +++++E +SG LS    +  
Sbjct: 110 EGARLAEPGEFTKRAFLRGRIDLSQAESVIDLIRAKTEQAQKIALEHLSGRLSIKINELR 169

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
           D L  + + IEA +DF E ED+  F+ +E++ +I  +K++I   I   + G+I R G   
Sbjct: 170 DALMRVCAHIEAYIDFPE-EDIDGFTEEEIIKEITHIKDEIKKLIEGYEEGKIYREGLTT 228

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  N GKSSL NAL  KD AIVT++PGTTRD++   ++++G  +KI DTAGIR+  D
Sbjct: 229 AIVGKPNVGKSSLLNALLMKDRAIVTEVPGTTRDIIEEYVNIKGMPLKIVDTAGIRQAHD 288

Query: 283 IVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSD------ 330
           +VE EGIKRT   VE A+L+LL+ + +       ++ IS       I +  K D      
Sbjct: 289 LVEAEGIKRTLRAVELAELVLLVLDASRPIDSLDEEIISRITQKRLIVVINKKDIKNKEF 348

Query: 331 -LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
            L      +    IS+  GEG+EEL   I     +   +    + +  RH   L   +  
Sbjct: 349 QLPDFLKNKPTVEISALKGEGIEELKELIFKTTISGKYEQEGLVVTKLRHKLALDSALNA 408

Query: 390 LEMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LE A  + K+   L+I A  LR A   LG+I G V  E++L++IFS+FCIGK
Sbjct: 409 LENAFQSFKNKEPLEITAMFLREALGFLGQIIGVVTTEEILNLIFSEFCIGK 460


>gi|317182657|dbj|BAJ60441.1| tRNA modification GTPase TrmE [Helicobacter pylori F57]
          Length = 450

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 137/453 (30%), Positives = 224/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AIS+I++SG +   + + + +K+   PR A +   F  +G +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVHDIFS-NGALLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SE ED+
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSE-EDI 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +    EV  ++          +    + +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 179 PSDFLNEVSQNLEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A +  ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQ-KTALENAIIELQNAKNHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|58696937|ref|ZP_00372434.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536832|gb|EAL60048.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 414

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 161/418 (38%), Positives = 244/418 (58%), Gaps = 12/418 (2%)

Query: 30  CFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGI 89
             +       KK+  PR A+L   +    +++D G++I FP+P SFTGED  E  VHG  
Sbjct: 2   ALKALNHFHIKKEIKPRFATLVDLYDDSSQLIDNGIIIYFPAPNSFTGEDVIELQVHGSK 61

Query: 90  AVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEG 149
           AV+  ILEEL+K+    +A PGEFS RAF NGK DL + E +ADLI +ET+MQ + +++ 
Sbjct: 62  AVIKIILEELSKV--FVMAKPGEFSLRAFLNGKFDLTQIEGIADLIDAETKMQAKQAIKQ 119

Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209
           +SGEL  LY  W  +L  I+S IEA +DF E+   +    +++ N++  L   I  H++ 
Sbjct: 120 ISGELERLYSNWRQRLITIQSKIEAYIDFPEDIWAEKSELEKINNEVQSLVRLIQEHLND 179

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            + GE +R G  IVI G  N GKS+LFN LAK+D+AIV++  GTTRD+L   +D+ GY +
Sbjct: 180 NRRGERLREGLHIVITGEPNVGKSTLFNFLAKRDIAIVSEYAGTTRDILEAHIDIGGYPI 239

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-KNIDFIFIGTK 328
            +SDTAGIRE+ D +E EGI R       ADL + L     +  I+    N D I++ +K
Sbjct: 240 ILSDTAGIRESSDPIELEGISRAKKRSFEADLRIELFPFEQRPNINCNVVNSDTIYVLSK 299

Query: 329 SDLYSTYTEEYDH-----LISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYH 382
           +D      +   +      +S   G G  +LI+ IK     KF       + + +RH  H
Sbjct: 300 ADDVINNHDIKINGIDLLPVSILKGIGTNKLISLIKEKAEEKFGHDRDTPVITRQRHRNH 359

Query: 383 LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + + + +L+  ++   D  +++I+E+LRLA+  LG + G +DVE++L  +FS FC+GK
Sbjct: 360 MQKALEHLQRFNI---DNPIELISEDLRLAAFELGAVIGIIDVEEILSSVFSNFCVGK 414


>gi|317014865|gb|ADU82301.1| tRNA modification GTPase TrmE [Helicobacter pylori Gambia94/24]
          Length = 450

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 139/453 (30%), Positives = 225/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AISII++SG +   + + + +K+   PR A +   F  +G +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVCDIFS-NGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +  + L  + +  E  +D+SE ED+
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSE-EDI 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +   KEV  ++          +      +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 179 PSDFLKEVSFNLEKQIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V++I GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 239 ALVSNIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDIILG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFNLMDTLNRAKKPCIVVLNKNDLVPKLELEILKSYLKIPYSILETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+QT   LE A    ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQTT-ALENAITELQNAKSHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HVLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450


>gi|218134368|ref|ZP_03463172.1| hypothetical protein BACPEC_02262 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989753|gb|EEC55764.1| hypothetical protein BACPEC_02262 [Bacteroides pectinophilus ATCC
           43243]
          Length = 463

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 154/470 (32%), Positives = 235/470 (50%), Gaps = 50/470 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSG--------------PSCFQVCEFICKK--KKPFPRKAS 49
           +TI A+ST             G                  +V + + +    K     AS
Sbjct: 9   DTIAAIST-------------GTMGSGGIGIIRISGDEAIEVADRLFRGVSGKKLADCAS 55

Query: 50  LRYFFG---LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLR 106
               +G    D ++LD+ L+ V  +P ++T ED AE + HGGI V   IL+ +      R
Sbjct: 56  HTIHYGTIVKDDKVLDEVLVSVMKAPNTYTREDVAEINCHGGILVTRKILDAVI-DAGAR 114

Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166
            A PGEF++RAF NG+IDL +AES+ D+I+S+ E     S+  + G+LS    +  + + 
Sbjct: 115 PAEPGEFTKRAFLNGRIDLTQAESVIDIINSQNEYALSSSVMQLRGKLSEEITRIREIIL 174

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
              +FIEA LD  E   +  +  K    D+    + + S +     G I+++G + VILG
Sbjct: 175 DNTAFIEAALDDPEHYTLDGYGDKL-AEDVDKCVDKLDSLLKTSDNGRILKDGIRTVILG 233

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
            +NAGKSSL NALA +D AIVTDI GTTRD L   + L+G ++ ++DTAGIR+T+DIVEK
Sbjct: 234 KTNAGKSSLLNALAGEDRAIVTDIAGTTRDTLEESISLDGVILNLTDTAGIRDTEDIVEK 293

Query: 287 EGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDL--------Y 332
            GI++      NADLI+ + +       N KK + F K    I +  K+D+         
Sbjct: 294 IGIEKAMKCAGNADLIIYVADATRNLDDNDKKILDFVKGRHVIVLLNKTDVENVLSVEQM 353

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
             +T+     IS+    G+ EL + I+ +    +         ++ RH   L +++  L+
Sbjct: 354 RAHTDFPVLAISAREQTGIRELSDTIRQMFFAGQISSNDQIYITNARHKNMLKESINSLK 413

Query: 392 MASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +     E     D    +L  A  SLGKI G    + L++ IFSKFC+GK
Sbjct: 414 LVKESIENGMPEDCYTIDLLNAYESLGKIIGQAVEDDLVNQIFSKFCMGK 463


>gi|24212880|ref|NP_710361.1| tRNA modification GTPase [Leptospira interrogans serovar Lai str.
           56601]
 gi|26454677|sp|P97043|MNME_LEPIN RecName: Full=tRNA modification GTPase mnmE
 gi|24193543|gb|AAN47379.1| tRNA modification GTPase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 456

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 158/459 (34%), Positives = 241/459 (52%), Gaps = 27/459 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKK------PFPRKASLRYFFGLD 57
            +TI AVST +   AI IIR+SGP    +   F+  K K        PR A    F   D
Sbjct: 2   NDTIAAVSTSSGAGAIGIIRMSGPEALTISSSFLFSKNKFLSPSEILPRTAIQCVFQIGD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            R +D+ L   F SP S+TGED  EFH HG   ++   L+ + +    R A  GEFSRRA
Sbjct: 62  -RKIDQILFFYFKSPNSYTGEDLCEFHFHGNPILLREALDAIFRA-GARPAKQGEFSRRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N K+DL E E++  LIS+ +  +  L+ + + GE++        +L  +++  EA++D
Sbjct: 120 FLNEKLDLTEVEAIGRLISARSRFELELAQKNVFGEVTRFTSNLRSQLISLKAECEAEID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FS  ED+   S +E    I  +K+   + IS+    E +   ++IV+ G  N GKSSL N
Sbjct: 180 FS-TEDLTYESLEERKTRIENVKSLCQTLISKSSSAEKLIQQFRIVLYGEPNTGKSSLMN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  K+ +I+++IPGTTRD ++ ++ LEG  V++ DTAG+RET D +EK GI+R+  E +
Sbjct: 239 VLLGKERSIISEIPGTTRDYISEEILLEGIPVRLVDTAGVRETTDHIEKLGIERSEKEFQ 298

Query: 298 NADLILLLKEINSKKEI------SFPKNIDFIFIGTKSD---------LYSTYTEEYDHL 342
           +AD+ L L +++ K+        S  +    I I  K D         L+S   +     
Sbjct: 299 SADIRLFLVDVSKKENWKEFINKSRERLEGSILIANKIDILNSSWDRNLFSDVKDLIVLE 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDCG 401
           IS  T EG+  L++ IK   + K       +   +R  YH    VR L+    L ++   
Sbjct: 359 ISCKTKEGISNLLDAIKER-TGKLGHSEDYVLLEERQRYHFETIVRCLDKTLHLLKEGAP 417

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +I  + +  A   +G++ G VD E++L  IFSKFC+GK
Sbjct: 418 AEIYIQEINYALAEIGEVNGKVDTEEVLGRIFSKFCVGK 456


>gi|193216965|ref|YP_002000207.1| tRNA modification GTPase TrmE [Mycoplasma arthritidis 158L3-1]
 gi|193002288|gb|ACF07503.1| tRNA modification GTPase TrmE [Mycoplasma arthritidis 158L3-1]
          Length = 442

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 142/444 (31%), Positives = 226/444 (50%), Gaps = 12/444 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            + I A+S+G +  AISIIR+ GP   ++ + I   K    +  +  +    D   +D+ 
Sbjct: 3   NDNITAISSGNINQAISIIRICGPDAIEILKKIYTGKIGTDKTITYGWIVDKDKTKIDEV 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+  F    ++ GED+ E + HGG+ V N IL  L      RLA  GEF+RRAF NG++ 
Sbjct: 63  LVNFFIGKNNYIGEDTVEINAHGGVVVTNKILN-LILANGARLAERGEFTRRAFLNGRLS 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++  LI ++T  Q ++++     E++ L     ++L  I S +E ++D+S+  D+
Sbjct: 122 LEKAEAINALIHAKTNKQAKIAITQFEPEINQLINSLENELLQIISLVEINIDYSDYNDI 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +     ++   +   +  I   + + +    I  G  I I+G  N GKSSL NAL +KD 
Sbjct: 182 EQMDKNKLNKLLDNFQKRIKVVVEKSENASDIYRGINIAIVGKPNTGKSSLLNALIQKDK 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRD++  + ++ G L +I DTAGIR+TD+ +E  GIK++   ++NA +I+ 
Sbjct: 242 AIVTDIPGTTRDLVEAEFEINGILFRIIDTAGIRKTDNEIESIGIKKSLEAIDNAKVIIH 301

Query: 305 LKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           L +         ++     K+  +I +  K DL     E  D +  S     L EL N +
Sbjct: 302 LHDPLQKDSTEDEQIKKLAKDKIYINVLNKRDLIKNLPE--DMVCISAKDNNLYELRNAL 359

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDIIAENLRLASVSLG 417
                N        +  + R L  L Q    +  A     +  G +++  +L  A  +L 
Sbjct: 360 VKK-YNDIDLDDKEVLYNTRQLSLLKQVEYNINDALEGLGQGFGPEVVILDLTKAWENLR 418

Query: 418 KITGCV-DVEQLLDIIFSKFCIGK 440
            I     D E LLD IFSKFC+GK
Sbjct: 419 SILNKSHDNEALLDNIFSKFCLGK 442


>gi|307638103|gb|ADN80553.1| GTPase and tRNA-U345-formylation enzyme [Helicobacter pylori 908]
 gi|325996704|gb|ADZ52109.1| tRNA modification GTPase [Helicobacter pylori 2018]
 gi|325998296|gb|ADZ50504.1| tRNA modification GTPase [Helicobacter pylori 2017]
          Length = 450

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 225/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AISII++SG +   + + + +K+   PR A +   F  DG +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVCDIFS-DGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEVQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +  + L  + +  E  +D+SE ED+
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSE-EDI 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +    EV  ++          +      +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 179 PSDFLDEVSFNLEKQIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDIILG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSTLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+QT   LE A +  ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQTT-ALENAIIELQNAKSHLDTLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|298735582|ref|YP_003728105.1| tRNA modification GTPase [Helicobacter pylori B8]
 gi|298354769|emb|CBI65641.1| tRNA modification GTPase [Helicobacter pylori B8]
          Length = 461

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 222/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AISII++SG +   V + + +K+   PR A +   F  +G +LDK 
Sbjct: 13  NDTIAAIATPLGKGAISIIKISGNNALNVLKQLTQKQDFTPRYAYVCDIFS-NGVLLDKA 71

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 72  LAIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 130

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+  
Sbjct: 131 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIP 190

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +F ++  LN    +       +      +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 191 SDFLNEVSLNLEKQI-ASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEER 249

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 250 ALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILG 309

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 310 VFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLVPKLELEILKSYLKIPYSLLETNTL 369

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L++ + 
Sbjct: 370 NSKACLKDLSQKISTFFPKLDTQNKLLLTSLAQ-KTALENAIFELQNAKNHLETLELFSY 428

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 429 HLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 461


>gi|294155306|ref|YP_003559690.1| tRNA modification GTPase [Mycoplasma crocodyli MP145]
 gi|291600068|gb|ADE19564.1| tRNA modification GTPase [Mycoplasma crocodyli MP145]
          Length = 453

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 140/454 (30%), Positives = 243/454 (53%), Gaps = 20/454 (4%)

Query: 5   KETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
            +TI A+S+G+ +   ISIIR+SGP   ++ + I   K    R  +       + ++LD+
Sbjct: 2   FDTIAAISSGSKVNQPISIIRISGPDTKKIMKKIFTGKIGEDRTITFGNIINQEQQVLDE 61

Query: 64  GLLIVFPSP--------ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
            L++ F            ++ GE+  E + HGG+ V N ILE + K    RLA PGEF+R
Sbjct: 62  VLVMWFLGTEKNNKVEYRNYVGEELVEINCHGGLIVTNLILELILK-NGARLALPGEFTR 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NGK+DL++AE++ DLI +++  Q   S++   G+ S +   ++++L  +    E +
Sbjct: 121 RAFLNGKLDLVKAEAIHDLIMAKSSKQATFSVKKFDGKTSKMIESFLEELALLIGLCEIN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D++   + +++  +  L N+I   ++  +  + +  G K+ +LG  N GKSSL
Sbjct: 181 IDYPEYDDIEEIDNTKMIEKLNILINEIDEILTVSQRSKKVFEGVKVALLGKPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  ++ AIVTDI GTTRD++    +L+G L  + DTAGIRE+ + +E  GI+++F +
Sbjct: 241 LNALISENKAIVTDIAGTTRDIIEASYELDGILFTLVDTAGIRESKEKIEVIGIEKSFEQ 300

Query: 296 VENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
           +E ADL++ + + + K        K+ S   N  +I +  K DL     ++ + +  S  
Sbjct: 301 LEKADLVIHILDPSQKENEFDKKIKDKSKMLNKIYIEVINKDDLILKNKKDKNKIYISAL 360

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDIIA 406
            + +  L  +I    SN   +    I ++ R L  +      L  A  N   +   D++ 
Sbjct: 361 NKEILNLEKEIIKNYSNINLEDER-ILANTRQLALIEDAKNKLLCAKNNLINNETFDVVI 419

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++  A   + +I G V+ E LLD +F  FC+GK
Sbjct: 420 VDIHEAWEKISEIKGVVNKEDLLDSMFKNFCLGK 453


>gi|294656970|ref|XP_002770353.1| DEHA2D18546p [Debaryomyces hansenii CBS767]
 gi|199431868|emb|CAR65707.1| DEHA2D18546p [Debaryomyces hansenii]
          Length = 516

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 159/482 (32%), Positives = 257/482 (53%), Gaps = 43/482 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGR 59
           M++ K TI+A+ST    SAI +IR+SG     +   + K  K P  + AS+R  +  +  
Sbjct: 36  MDY-KPTIYALSTKLARSAIGVIRVSGSQSQYIYNQLTKTSKSPKLKIASVRKLYSQEDI 94

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP------NLRLANPGEF 113
           +LD+ L + F SP+++TGED  E H+HGG A++  +L  + K+       N+R A  GEF
Sbjct: 95  LLDEALTLYFKSPKTYTGEDILELHLHGGTAIIQSVLNAIKKLHEPNKGINIRYAENGEF 154

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           SRRAF NG+ DL E E + ++I +ETE QR  ++  ++G+    + +W +++    + + 
Sbjct: 155 SRRAFINGRFDLTEIEGIREMIDAETESQRVAALSSLTGDTKKTFAKWREEIVKNVALLT 214

Query: 174 ADLDFSEEEDVQNFS--SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
             +DF E+ D++  +     V  ++  L  +I++ + +    E++  G K+++LG  NAG
Sbjct: 215 TVIDFGEDHDIEEVAQLFDTVEQNMDTLTGEINTFLRKVLSSEVLMKGIKLILLGPPNAG 274

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGI 289
           KSSL N LA K+ AIV+DI GTTRDV+ + LD+ GY V + DTAGIR T   D +E EGI
Sbjct: 275 KSSLLNYLANKEAAIVSDIAGTTRDVIDVPLDINGYKVIVGDTAGIRTTTNADKIELEGI 334

Query: 290 KRTFLEVENADLILLLKEINSKKEISFP-----------KNIDFIFIGTKSDLYST---- 334
           KR  L+    DL+L++  +     I +            +  + + +  K DL S+    
Sbjct: 335 KRAKLKSLGGDLVLVVLPLEDNSYIDYSDLVSHINLLKDEEKEIVVVLNKQDLLSSSNFT 394

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSN-KFKKLPFSIPSHKRHL 380
                           E  HL+S  TG+G+ EL+  +  I       +    I    R  
Sbjct: 395 KNEIIQSYSEKLILPVENFHLVSCITGDGISELMCVLTDIFKAISLTETTDPIVISARAQ 454

Query: 381 YHLSQTVRY-LEMASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCI 438
             L   V Y +E   +  +   + + +E+L+ A+  +GKITG  + VE++L ++FS FCI
Sbjct: 455 DILRNDVIYGIEQFKIWREQDDVVLASESLKQAAEGIGKITGEAIGVEEVLGVVFSSFCI 514

Query: 439 GK 440
           GK
Sbjct: 515 GK 516


>gi|317011582|gb|ADU85329.1| tRNA modification GTPase TrmE [Helicobacter pylori SouthAfrica7]
          Length = 450

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 136/453 (30%), Positives = 223/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AISI+++SG +   + + + KK+   PR A +   F  +  +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISIVKISGNNALNILKQLTKKQDFTPRYAYVCDIFS-NNILLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGSPLLTQNILQACLNL-GARLAQAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SE ED+
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARSNLLKLLASSEVLIDYSE-EDI 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +    EV  ++          +    + +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 179 PSDFLNEVSQNLEKQIASFKDLLDFSNMQKQKNKGHALSIIGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESMDEIERLGIEKSLKSLENCDIILG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKNDLAPKLGLEILKSYFKIPYSILETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +++    P     +K  L  L+Q    LE A +  ++       L++ + 
Sbjct: 359 NSKACLKDLSQQISAFFPKLDTQNKLLLTSLAQ-KNALENAIIELQNAKNHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|317010176|gb|ADU80756.1| tRNA modification GTPase TrmE [Helicobacter pylori India7]
          Length = 450

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 138/453 (30%), Positives = 222/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AISII++SG +   + + + +K+   PR A +   F  +G +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISIIKISGNNALNILKQLTQKQDFTPRYAYVCDIFS-NGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+  
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIP 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +F  +  LN    +       +      +    G+ + I+G  N GKSSL NA+  ++ 
Sbjct: 180 SDFLDEVSLNLEKQI-ASFKDLLDFSNAQKQRNKGHALSIVGKPNTGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADTIERLGIEKSLKSLENCDIILG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEVLKSHLKIPYSILETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A +  ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQ-KTALENAIIELQNAQNHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|206900693|ref|YP_002251652.1| tRNA modification GTPase TrmE [Dictyoglomus thermophilum H-6-12]
 gi|206739796|gb|ACI18854.1| tRNA modification GTPase TrmE [Dictyoglomus thermophilum H-6-12]
          Length = 455

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 147/459 (32%), Positives = 246/459 (53%), Gaps = 28/459 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFG---LDGR 59
           K+ I A++T    SAI +IRLSGP    + + I   KK+K      S    +G       
Sbjct: 2   KDNIVAIATPLGFSAIGVIRLSGPDVIDIVKKIFIPKKEKDLKEVLSHTIHYGNIVYKNE 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L+ V+ +P+S+TGED  E   HG   ++  IL+ L +    R+A  GEF++RAF 
Sbjct: 62  IIDEVLVAVYKAPKSYTGEDMVEIFTHGSPIILEEILKILVE-EGARIAERGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DLL+AES+ ++I +E+++  + ++  + GELS        K+ ++R ++EA +DF 
Sbjct: 121 NGKVDLLQAESINEIIRAESKIALKRALSKLKGELSRKLRDLKSKVEYLRIYLEASIDFP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+   +    ++ + +I  +K ++S  + + + G+ IR GY ++++G  N GKSSLFNAL
Sbjct: 181 EDV--EEKEKEDWIRNIEEIKKEVSDLLEKAEKGDWIREGYGVILVGRPNVGKSSLFNAL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            ++D AIVT IPGTTRD +  +L L  G+LVKI DTAG+    DI++K G++RT   +E 
Sbjct: 239 MREDRAIVTPIPGTTRDYIEGELYLSSGHLVKIYDTAGLGIPKDILDKMGMERTEKILEK 298

Query: 299 ADLILLLKEIN---SKKEISFPK------NIDFIFIGTKSDLYSTY------TEEYDHLI 343
           ++LIL + + +   S++EI+  +      N   I +  K DL           +     +
Sbjct: 299 SNLILFVVDGSCEASEEEINLLEKIKSYQNKKLILVVNKIDLPQKVDLSVFPKDIEKIFV 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-- 401
           S+   +G+EE+   I+       + +   I  +  H   L +     E      K+    
Sbjct: 359 SAKERKGIEEIEKVIER--HITSQDVEDGIFLNMYHREKLKEVYNLCEEGLNVLKNLPQS 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD++ + +     + G+I G      + D IF  FC+GK
Sbjct: 417 LDVLGDIIYDMDRAFGEILGEEVSLDITDKIFENFCVGK 455


>gi|225016766|ref|ZP_03705958.1| hypothetical protein CLOSTMETH_00678 [Clostridium methylpentosum
           DSM 5476]
 gi|224950434|gb|EEG31643.1| hypothetical protein CLOSTMETH_00678 [Clostridium methylpentosum
           DSM 5476]
          Length = 454

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 135/455 (29%), Positives = 227/455 (49%), Gaps = 24/455 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLDGRI 60
           TI A++T      IS+IRLSG    ++ + I       P       +A+        G  
Sbjct: 3   TIAAIATPHAVGGISVIRLSGDKAIEIAQKIFHPLSGKPLQKMDGYRAAYGTINNQAGE- 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ +VF +P+S+TGED  E   HGG+ +   +L    +    ++A  GEF++RAF N
Sbjct: 62  IDDGVALVFHAPKSYTGEDVVEISCHGGLYISRQVLRAALEA-GAKMAENGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+ L +AES+ +LI++++E   + ++  M G L     +  D+L  I   ++A +D+ E
Sbjct: 121 KKMTLTQAESVINLINAQSEQAAKSALTTMGGALYKEIRRICDRLITIAGHLDAWVDYPE 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           EE  +  +   +L  +      +   +S+   G I + G +  I+G  N GKS+L N LA
Sbjct: 181 EEIEEIEA-DSLLKQLKESHQALVGLLSRYDTGRIYQQGVETAIVGKPNVGKSTLMNLLA 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
               +IVT+I GTTRDV+   +D+  G +++++DTAGIRET+D+VE+ G+ R    +++A
Sbjct: 240 GYQKSIVTEIAGTTRDVVEEAVDIGGGIILRLADTAGIRETEDLVERIGVDRAKERIQSA 299

Query: 300 DLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE-------YDHLISSF 346
            L+L L + +   E      I        I +  KSDL +    +       +   IS+ 
Sbjct: 300 SLVLALFDSSEPVEEQDASFIEQLSGFPVIAVVNKSDLPARIDLDLLKKKFRWVVSISAK 359

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDII 405
             EG+E+L   I  +L  +       + +++R          YL  A    K    LD +
Sbjct: 360 QNEGIEQLKESIFDLLQMEEIDGNAPMLANERQRVCAQNAENYLGEAIDALKVGFTLDAV 419

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++  A   L ++TG    E ++D +FS FC+GK
Sbjct: 420 TVSVESAIQELLELTGERVTEAVVDEVFSHFCVGK 454


>gi|188528222|ref|YP_001910909.1| tRNA modification GTPase TrmE [Helicobacter pylori Shi470]
 gi|254811486|sp|B2UVJ7|MNME_HELPS RecName: Full=tRNA modification GTPase mnmE
 gi|188144462|gb|ACD48879.1| tRNA modification GTPase TrmE [Helicobacter pylori Shi470]
          Length = 450

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 222/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AIS+I++SG S   + + + +K+   PR A +   F  +G +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISVIKISGNSALNILKQLTQKQDFTPRYAYVCDIFS-NGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+  
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIP 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +F  +  LN    +       +      +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 180 SDFLDEVSLNLEKQI-ASFKDLLDFSNTQKQKNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSHLKIPYSLLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQ-KTALENAIFELQNAKNHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  SL  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HLLSAIESLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|332702562|ref|ZP_08422650.1| tRNA modification GTPase mnmE [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332552711|gb|EGJ49755.1| tRNA modification GTPase mnmE [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 521

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 138/523 (26%), Positives = 233/523 (44%), Gaps = 85/523 (16%)

Query: 1   MNHE------KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKAS 49
           M+H+      ++TI A++T      + I+RLSGP   ++   + +   P      PR   
Sbjct: 1   MHHDTDTQDIQDTIAAIATPPGQGGVGIVRLSGPDAKRIGLAMFRATSPAFRDFTPRMLH 60

Query: 50  LRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109
                   G  +D+ L ++ P P S+TGED  E H HG  AV+  +L+    +   RLA 
Sbjct: 61  HGAILDAQGSPIDEALAVLMPGPRSYTGEDVLELHCHGSSAVLREVLDATLAL-GARLAE 119

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
            GEF+RRAF NG++DL +AE++A+LI++       L+   ++G L         +L H+R
Sbjct: 120 RGEFTRRAFLNGRLDLSQAEAVAELIAAPDRAAAHLARTRLAGLLGERVRALRTRLEHLR 179

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           + +   +DF E+E V   + ++ L+ +  +  ++   ++  +     R G  +V+ G  N
Sbjct: 180 AALCVAVDFPEDE-VDCLAPEDFLSGVRAVMAEVRGLLTSHERTRAFREGAVVVLAGPVN 238

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
           AGKSSL NAL  ++ AIV+D PGTTRD L   + L+G  V++ DTAG+RET D VE EG+
Sbjct: 239 AGKSSLLNALLGRERAIVSDTPGTTRDWLEESISLDGLPVRLVDTAGLRETADAVELEGV 298

Query: 290 KRTFLEVENADLILLLKEINSKKEISFPKNID------FIFIGTKSDLYSTYTEEYDHLI 343
           +R+   +E ADL+LL+ +     + +             + +  K DL     +E    I
Sbjct: 299 RRSRELLERADLVLLVLDGGQPADPAALALAHEVGPQRLLLVMNKIDLAPELPDEPGEGI 358

Query: 344 S------------------------------SFTGEGLEELINKIKSILSNKFKKLPF-S 372
           +                                  E ++   ++ +         LP  +
Sbjct: 359 ALPRPHPPGGDAPLDPRSSGADRPECVEGRPVLAAENMKMRGDRGELFPPAAGGILPLPA 418

Query: 373 IPSHKRH---LYHLSQTVRYLEMASLNEKDCGLDII-----AENLRLASVSL-------- 416
           +P   R    +  L+ T+R     +   +    ++      A+ +R A   L        
Sbjct: 419 LPVSARTGAGIEALTATLRRRLAEAAGGEPQAGELAPNVRQAQAMRQALDELEALALDIE 478

Query: 417 -------------------GKITGCVDVEQLLDIIFSKFCIGK 440
                              G+ITG +  + +L+ +F  FCIGK
Sbjct: 479 AAVPYDLLSVRLETACMRLGEITGEIAPQDVLNAVFDTFCIGK 521


>gi|308183548|ref|YP_003927675.1| tRNA modification GTPase TrmE [Helicobacter pylori PeCan4]
 gi|308065733|gb|ADO07625.1| tRNA modification GTPase TrmE [Helicobacter pylori PeCan4]
          Length = 450

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 136/452 (30%), Positives = 221/452 (48%), Gaps = 19/452 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AIS+I++SG +   + + + +K+   PR A +R  F  DG +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-DGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SE ED+
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARSDLLKLLASSEVLIDYSE-EDI 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +   KEV  ++          +    + +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 179 PSDFLKEVSFNLEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADRIERLGIEKSLKSLENCDIILG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFNLMDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYTLLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR---YLEMASLNEKDC-----GLDIIAEN 408
             K+ L +  +K+    P        L  ++     LE A    ++       L++ + +
Sbjct: 359 NSKACLKDLSQKISEFFPKLDTQNKLLLTSIAQKTALENAITELQNAKNHLETLELFSYH 418

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  A  +L  +T   +  Q+LD +F +FC+GK
Sbjct: 419 ILSAIENLNLLTRPYETSQMLDSMFGEFCLGK 450


>gi|217033108|ref|ZP_03438572.1| hypothetical protein HPB128_27g15 [Helicobacter pylori B128]
 gi|216945181|gb|EEC23872.1| hypothetical protein HPB128_27g15 [Helicobacter pylori B128]
          Length = 450

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 222/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AISII++SG +   V + + +K+   PR A +   F  +G +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISIIKISGNNALNVLKQLTQKQDFTPRYAYVCDIFS-NGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LAIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+  
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIP 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +F ++  LN    +       +      +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 180 SDFLNEVSLNLEKQI-ASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLVPKLELEILKSYLKIPYSLLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISTFFPKLDTQNKLLLTSLAQ-KTALENAIFELQNAKNHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|290998015|ref|XP_002681576.1| mitochondrial tRNA modification GTPase [Naegleria gruberi]
 gi|284095201|gb|EFC48832.1| mitochondrial tRNA modification GTPase [Naegleria gruberi]
          Length = 609

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 154/502 (30%), Positives = 262/502 (52%), Gaps = 69/502 (13%)

Query: 6   ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGLDGR--I 60
           +TI+A+++G     A+S+IR+SG     V   + K   +K   RKA        +     
Sbjct: 110 DTIYAMASGFTSSCAVSVIRVSGAKAMNVVTKMTKLNPEKIESRKAYYCSLHDPNNINIP 169

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA-KMPNLRLANPGEFSRRAFE 119
           +DK LL+ F  P SF+GED  E H HG  AVV+ +++ L  ++   R A+PGEF++RAF 
Sbjct: 170 IDKVLLLYFKGPNSFSGEDIIEIHCHGSKAVVSQLMKALGSEIVGYRPADPGEFTKRAFL 229

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N K+DL E E L+DL+ ++TE QR  +++ ++GELS +   W  ++ H  + + A +DF 
Sbjct: 230 NRKMDLTEVEGLSDLLHAQTEHQRIQALKQINGELSHIVTNWKREMLHCVAHVTAFIDFG 289

Query: 180 EEEDVQN--FSSKEVLNDILFLKNDISSHIS--QGKLGEIIR--NGYKIVILGHSNAGKS 233
           ++  ++      + ++  +  L +++  ++   + +LGE +R  NG +  +LG  NAGKS
Sbjct: 290 DDNGLEESVVYRERIMPSVKKLASELEYYLEISKNRLGERLREGNGIRCALLGAPNAGKS 349

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE------------TD 281
           SL N LA+KD+AIV+D  GTTRDV+ + L+L+G+ V ++DTAG+R+              
Sbjct: 350 SLLNILAEKDIAIVSDQAGTTRDVVEVQLNLKGWPVTVADTAGLRDQKNDISSETELGKH 409

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----------------SKKEISFPKNIDFIF 324
            ++E EG+KR   + + AD+IL++ + +                 S+      +      
Sbjct: 410 YLIEIEGMKRAIQKAKEADIILIVIDSSDSLASANQMLDSCLERLSENNHQILEQKKIFA 469

Query: 325 IGTKSDLYSTY-----------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF-- 371
           I  K D                 +     +S  T EG+++LI +I + + N F       
Sbjct: 470 IFNKIDSRDNVDFIGPINTASGKDIPTFAVSCITKEGVDKLIERIGTTVENIFTGNDEQF 529

Query: 372 -------------SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
                         + + +RH    ++T+ +L  A  + K   +++ AE++R A  SL +
Sbjct: 530 FTKDVGSQQAEHALLITRERHRISFTKTLLFLNKALEDNKQ--IELAAEHIRQAHKSLCE 587

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           +TG VD EQ+LD++F +FCIGK
Sbjct: 588 VTGDVDFEQILDVVFKEFCIGK 609


>gi|255600342|ref|XP_002537439.1| gtpase mss1/trme, putative [Ricinus communis]
 gi|223516353|gb|EEF24944.1| gtpase mss1/trme, putative [Ricinus communis]
          Length = 416

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 132/412 (32%), Positives = 213/412 (51%), Gaps = 17/412 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A++T      I ++R+SGP    +   I     P PR A+   F   D  ++D+
Sbjct: 9   TTDTIAAIATAPGAGGIGVVRVSGPLAADIATQILG-HCPAPRHAAYLPFLQADTTLIDR 67

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ I FP+P S+TGED  E   HGG A++  +L    +    R A  GEF++RA+ N K+
Sbjct: 68  GIAIYFPNPHSYTGEDVLELQAHGGTALMQILLARCIEC-GARHAQAGEFTQRAYLNDKL 126

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI++ T    R ++  +SGE S      + +L  +R ++EA LDF E E+
Sbjct: 127 DLAQAEAVADLINAATVEAARSAVRSLSGEFSQAIQTLLQQLVDLRMYVEACLDFPE-EE 185

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +   VL+ +   +  +     Q + G ++R G  +V++G  N GKSSL NAL+ ++
Sbjct: 186 IDFITQGRVLDKLQANQAALQHIFDQARQGVLLREGINVVLIGQPNVGKSSLLNALSGEE 245

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           VAIVT I GTTRD +   + +EG  + + DTAG+RET+D VE+ GI RT+  +E A + L
Sbjct: 246 VAIVTPIAGTTRDTIKSVIQIEGVPLHVIDTAGLRETEDTVEQVGIARTWKAIETAHVAL 305

Query: 304 LLKEINSKKEIS-------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEG 350
           LL +                P  +  +++  K D+         +  E    +S+ TG+G
Sbjct: 306 LLVDSQHGIGAQEKAILHKLPPEVKKVWVHNKIDVSRETSRIEKHENEQHVFLSAKTGDG 365

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +  L   +  I+  +         +  RHL  L +  ++L+ A L      L
Sbjct: 366 IASLQKTLLEIVGYQPG-GEGVFMARARHLQALEEVEQHLDQAMLQMHAAEL 416


>gi|308185215|ref|YP_003929348.1| tRNA modification GTPase TrmE [Helicobacter pylori SJM180]
 gi|308061135|gb|ADO03031.1| tRNA modification GTPase TrmE [Helicobacter pylori SJM180]
          Length = 450

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 139/453 (30%), Positives = 226/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AISII++SG +   + + + +K+   PR A +R  F  +G +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDVCEIQCHGSPLLAQHILQACLNL-GSRLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +  + L  + +  E  +D+SEE+  
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNDLLKLLASSEVLIDYSEEDIP 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +F  +  LN    +       +      +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 180 SDFLKEVSLNLEKQI-ASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDIILG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            L+    
Sbjct: 299 VFDLSKPLEKEDFNLIDALNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLKTNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+QT   LE A +  ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQTT-ALENAIIELQNAKSHLDTLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|15646061|ref|NP_208243.1| tRNA modification GTPase TrmE [Helicobacter pylori 26695]
 gi|14195258|sp|O25991|MNME_HELPY RecName: Full=tRNA modification GTPase mnmE
 gi|2314627|gb|AAD08492.1| thiophene and furan oxidizer (tdhF) [Helicobacter pylori 26695]
          Length = 461

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 138/453 (30%), Positives = 222/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AISII++SG +   + + + +K+   PR A +   F  +G +LDK 
Sbjct: 13  NDTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVHDIFS-NGVLLDKA 71

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 72  LVIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 130

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SEE+  
Sbjct: 131 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIP 190

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +F     LN    +       +      +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 191 SDFLDGVSLNLEKQI-ASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEER 249

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 250 ALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILG 309

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 310 VFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYTLLETNTL 369

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q +  LE A    ++       L++ + 
Sbjct: 370 NSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKI-ALENAITELQNAKNHLETLELFSY 428

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 429 HILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 461


>gi|291531889|emb|CBK97474.1| tRNA modification GTPase TrmE [Eubacterium siraeum 70/3]
          Length = 457

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 140/456 (30%), Positives = 218/456 (47%), Gaps = 22/456 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG---LDGR 59
           + I A+ST      +S+IR+SG    +V   +   K P     +       +G    DG 
Sbjct: 3   DCIAAISTPMASGGVSMIRISGADALEVAAKVFIPKYPVRDIEKMDGYTAAYGDITADGT 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD G+L++F +P S+TGE++AE   HGGI V   +L+ +       +A  GEF+++A  
Sbjct: 63  KLDDGVLLIFRAPHSYTGENTAEITCHGGIHVTKRVLQAVLSA-GAVMAQAGEFTKQALV 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+ L EAE + DLI++  +     +     G L        +++  I S I   +D+ 
Sbjct: 122 NGKLSLTEAEGVIDLINAGNDQLLSCARAQTDGALYRRIEALCEEIIAITSEIAVWIDYP 181

Query: 180 -EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E ED    +  + L  +  +K +I S I+    GEI+RNG    I+G  NAGKS+L N 
Sbjct: 182 DESEDEDEIAKADWLKSVTAVKENIDSLIATYDCGEILRNGIATAIVGKPNAGKSTLMNR 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L     +IVTDI GTTRD++   + L   ++K++D AGIRET+D VE  G++R    +  
Sbjct: 242 LTGVQKSIVTDIEGTTRDIVEDTVQLGDIMLKLADCAGIRETEDTVENIGVQRMIERIGT 301

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISS 345
           A LIL + +       + K+ I        I I  KSDL +     +          IS+
Sbjct: 302 AQLILAVFDGSRELSDDDKRLIELLHGKTVIPIINKSDLEARADTAFIENELGKAVKISA 361

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDI 404
            TG G +EL   IK               +++R           ++ A +        D+
Sbjct: 362 KTGGGADELEQAIKQRCGISNLDAGAGFLANERQRQCALSAQAAVDRAYNALHGGMTADV 421

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               L  A  SL +++G    E+++D IFS+FC+GK
Sbjct: 422 AGLELEAALSSLYELSGKTASEEVIDRIFSRFCVGK 457


>gi|121998021|ref|YP_001002808.1| tRNA modification GTPase TrmE [Halorhodospira halophila SL1]
 gi|205829155|sp|A1WWE4|MNME_HALHL RecName: Full=tRNA modification GTPase mnmE
 gi|121589426|gb|ABM62006.1| tRNA modification GTPase trmE [Halorhodospira halophila SL1]
          Length = 469

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 154/456 (33%), Positives = 235/456 (51%), Gaps = 24/456 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           + +TI A++T +    ++++R+SG    +V E +     P PR+A LR F    G  LD 
Sbjct: 18  DADTICAMATPSGQGGVAVVRVSGSRALEVAEEVAGP-LPAPREAGLRRFRDARGETLDH 76

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GL++VFP P S+TGED  E   HG  A V  +LE L      R A PGEFS RAF NG++
Sbjct: 77  GLVLVFPGPGSYTGEDVVELQGHGSPAAVTAVLEALC-AAGARPAGPGEFSERAFLNGRL 135

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++A LI +ET+  RR ++  +SG          D++  +R+ IEA LDF E+ED
Sbjct: 136 DLTQAEAVASLIEAETDGARRAALRALSGAFGQRVDGLADRMIDLRALIEAFLDFPEDED 195

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V     +    +I  L ++++    +   G     G ++ ++G  NAGKSSL N L+ ++
Sbjct: 196 VPADPPEL-AAEIEALGSELAEIRRRAAAGVRFGEGIRVALVGPPNAGKSSLLNVLSGEE 254

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE--KEGIKRTFLEVENADL 301
            AIV+   GTTRDV+     L     ++ DTAG+R+ +   E   EG +R       ADL
Sbjct: 255 AAIVSAQAGTTRDVVRQWAALGSRHAELLDTAGLRDAEAQDEIEAEGARRARAAASEADL 314

Query: 302 ILLLKEINS------KKEISFPKNIDFIFIGTKSDL------YSTYTEEYDHLI----SS 345
           +L++ E         +  I+       + I  K D       +   +E   H+     S+
Sbjct: 315 LLVVIEAGKTLDEELRARIAEQAPRPVVVIVNKIDASGDEAGWEGESEVGAHVRRARVSA 374

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDI 404
            TG G+E L   + +++  +      +  +  RH+  L +    LE A +  +  G  ++
Sbjct: 375 HTGAGIEALRRGLAALVDREAG--EDAWAARHRHIEALDRAGEELEEALVVARRGGQEEL 432

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +AE LR A  +LG+ITG V  E LL  IFS FCIGK
Sbjct: 433 VAEALRRAQTALGEITGRVSHEALLGRIFSGFCIGK 468


>gi|289209758|ref|YP_003461824.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. K90mix]
 gi|288945389|gb|ADC73088.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. K90mix]
          Length = 437

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 147/439 (33%), Positives = 226/439 (51%), Gaps = 10/439 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDKG 64
           +TI AV+T      I ++RLSGP    +   +  + +  PR+A          G  +D G
Sbjct: 5   DTIVAVATPPGVGGIGVVRLSGPQSLVIARRLTGRDRLRPRQAHYGRLTDPASGETIDDG 64

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP+P S+TGED  E   HG   ++  ++     +   R A PGEF+ +AF NG++D
Sbjct: 65  LILYFPAPHSYTGEDVVELQGHGSPVLLEALVAAAVGL-GARRARPGEFTEQAFLNGRLD 123

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ADLI ++T    RL+   + G L++        +  +R  IEA++DF E  D+
Sbjct: 124 LAQAEAVADLIHAQTTQAARLARSSLDGALAAELEPVSRAIRDMRVIIEAEIDFGET-DL 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           ++ ++ ++      L   I + + + +       G ++ ++G  N GKSSL N LA+ +V
Sbjct: 183 ESEAAPDIARRTEVLHTTILALLERLRPARYFAQGLRLALVGAPNVGKSSLMNRLAESEV 242

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTD PGTTRDVL   + + G  V++ DTAG+  +DD VEK G++R       ADLIL 
Sbjct: 243 AIVTDRPGTTRDVLRSPIAIHGIPVELIDTAGLHASDDPVEKIGMQRAREAATGADLILD 302

Query: 305 LKEINSKK---EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
           L+++   +   E+  P  I  + +  K D  +        +IS+ TG G++EL   I   
Sbjct: 303 LRDLTRPEAVPELEAPPEIPRLTVWNKQDCVADSRSTEGIVISARTGAGIDELKQAIVER 362

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
           L    +          RHL  L     +L      E     D+IAE LRLA  +L  + G
Sbjct: 363 L-GASEGGQQRFSVRARHLDGLRLAALHLGR---IEASAAPDLIAEELRLAEAALDALLG 418

Query: 422 CVDVEQLLDIIFSKFCIGK 440
             D E LL  IF+ FCIGK
Sbjct: 419 RQDHEALLGEIFAGFCIGK 437


>gi|167648978|ref|YP_001686641.1| tRNA modification GTPase TrmE [Caulobacter sp. K31]
 gi|189036195|sp|B0T6E0|MNME_CAUSK RecName: Full=tRNA modification GTPase mnmE
 gi|167351408|gb|ABZ74143.1| tRNA modification GTPase TrmE [Caulobacter sp. K31]
          Length = 447

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 162/435 (37%), Positives = 247/435 (56%), Gaps = 26/435 (5%)

Query: 24  RLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEF 83
           R+SG     +   +     P PR+A LR     DG  LD  L++ F  P S+TGED+AEF
Sbjct: 21  RISGARSADIVRGLAG-DLPKPRRAVLRQLT-RDGVALDDALVLWFQGPASYTGEDAAEF 78

Query: 84  HVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143
           HVHGG AVV  +LE LA    LRLA PGEF+RRAFENGK+DL +AE +ADLI +ETE QR
Sbjct: 79  HVHGGRAVVEAVLEALA-AEGLRLAEPGEFTRRAFENGKLDLTQAEGVADLIDAETEAQR 137

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
           R ++  + G LS  Y  W   L    + +EA +DF +EE  ++ +++     +  L+ +I
Sbjct: 138 RQALGQLGGALSQRYEAWRGLLVQALAMLEAAVDFPDEELPEDVAARA-RPGLEALEAEI 196

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
            + +     G  +R+GY+I ++G  NAGKS+L NAL ++D AIVT  PGTTRD++ + L 
Sbjct: 197 GAALVDASRGRRVRDGYRIALVGAPNAGKSTLLNALVERDAAIVTSTPGTTRDIIEVPLT 256

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFPK 318
           L GY   ++DTAG+R+T+D +E EG++R       ADL L + +     +    E++  +
Sbjct: 257 LGGYKTLLADTAGLRKTEDTIEAEGVRRARAWAAGADLRLWVIDAAMFHVKQDDELAVIQ 316

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL-------------INKIKSILSNK 365
             D   +  K DL          L ++F+ +GL+ +                + + + + 
Sbjct: 317 RGD-WAVINKIDLVD--AGRLAELRATFSEQGLKVVELAARKPGGAEPARAALSTHVIDA 373

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425
                F   +  RH   L++   YL+ A L++    ++++AE++RLA+ +L +ITG +D 
Sbjct: 374 LSGAEFPAATRIRHAESLTEARTYLQRA-LSDVGLEVELVAEDVRLAARALSRITGRIDP 432

Query: 426 EQLLDIIFSKFCIGK 440
           E +LD +FS FCIGK
Sbjct: 433 EDVLDRVFSSFCIGK 447


>gi|332253640|ref|XP_003275944.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
           [Nomascus leucogenys]
          Length = 415

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 157/436 (36%), Positives = 228/436 (52%), Gaps = 57/436 (13%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPPARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FPSP+SFTGED  EFHVHGG+AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPSPQSFTGEDCVEFHVHGGLAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQADIEVRALEVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R             
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARE---------- 324

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                               IG    L S+   +                          
Sbjct: 325 --------------RWVDRVIGKTMSLVSSRCGDP------------------------- 345

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
                   + +  RH +HL   +  L       +   L + AE LR+A   L ++TG   
Sbjct: 346 ---STDPPLLTRARHQHHLQGCLDALGHYK---QSKDLALAAEALRVARGHLTRLTGGGG 399

Query: 425 VEQLLDIIFSKFCIGK 440
            E++LDIIF  FC+GK
Sbjct: 400 TEEILDIIFRDFCVGK 415


>gi|291556568|emb|CBL33685.1| tRNA modification GTPase TrmE [Eubacterium siraeum V10Sc8a]
          Length = 457

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 140/456 (30%), Positives = 218/456 (47%), Gaps = 22/456 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG---LDGR 59
           + I A+ST      +S+IR+SG    +V   +   K P     +       +G    DG 
Sbjct: 3   DCIAAISTPMASGGVSMIRISGADALEVAAKVFIPKYPVRDIEKMDGYTAAYGDITADGT 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD G+L++F +P S+TGE++AE   HGGI V   +L+ +       +A  GEF+++A  
Sbjct: 63  KLDDGVLLIFRAPHSYTGENTAEITCHGGIHVTKRVLQAVLSA-GAVMAQAGEFTKQALV 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+ L EAE + DLI++  +     +     G L        +++  I S I   +D+ 
Sbjct: 122 NGKLSLTEAEGVIDLINAGNDQLLSCARAQTDGALYRRIEALCEEIIAITSEIAVWIDYP 181

Query: 180 -EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E ED    +  + L  +  +K +I S I+    GEI+RNG    I+G  NAGKS+L N 
Sbjct: 182 DESEDEDEIAKADWLKSVTAVKENIDSLIATYDCGEILRNGIATAIVGKPNAGKSTLMNR 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L     +IVTDI GTTRD++   + L   ++K++D AGIRET+D VE  G++R    +  
Sbjct: 242 LTGVQKSIVTDIEGTTRDIVEDTVQLGDIMLKLADCAGIRETEDTVENIGVQRMIERIGT 301

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISS 345
           A LIL + +       + K+ I        I I  KSDL +     +          IS+
Sbjct: 302 AQLILAVFDGSRELSDDDKRLIELLHGKTVIPIINKSDLEARADTAFIENELGKAVIISA 361

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDI 404
            TG G +EL   IK               +++R           ++ A +        D+
Sbjct: 362 KTGGGADELEQAIKQRCGISNLDAGAGFLANERQRQCALSAQAAVDRAYNALHGGMTADV 421

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               L  A  SL +++G    E+++D IFS+FC+GK
Sbjct: 422 AGLELEAALSSLYELSGKTASEEVIDRIFSRFCVGK 457


>gi|154173921|ref|YP_001408433.1| tRNA modification GTPase TrmE [Campylobacter curvus 525.92]
 gi|205829128|sp|A7GYZ1|MNME_CAMC5 RecName: Full=tRNA modification GTPase mnmE
 gi|112802942|gb|EAU00286.1| tRNA modification GTPase TrmE [Campylobacter curvus 525.92]
          Length = 444

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 233/448 (52%), Gaps = 13/448 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           ++ + + I A++T     +I IIRLSG +  Q    + K     PR A+L   + LD   
Sbjct: 2   ISSKNDDIAAIATAHGIGSICIIRLSGSTALQSALKLTKISNLSPRLATLTKIYSLDKEF 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ ++I F +P SFTGED  EFH HGG  V + IL EL K+  +RLA PGEFS+RAF N
Sbjct: 62  LDEAIMIYFKAPASFTGEDVVEFHTHGGFVVADMILNELVKL-GVRLAEPGEFSKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++  LI+S +E   ++    M G+LS    Q  ++L    +F+E  +D+++
Sbjct: 121 DKLDLAKAEAIQGLINSRSEAAAKILARQMRGDLSRYVEQMRNELVKTLAFVETSIDYAD 180

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           ++ + +   +++   +      +   +   +    + +G+K+ I+G  N GKSS+ N+L 
Sbjct: 181 DD-LPDDLLEQIKTMLEANAAKLDKIVQISEQRRGLIDGFKVAIVGKPNVGKSSILNSLL 239

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + AI++D  GTTRD +  +  +  +LV+I DTAGIR+    +EK GI+ +   +E AD
Sbjct: 240 SYERAIISDEAGTTRDRIEENFKVGTHLVRIIDTAGIRKNAGKIEKIGIRYSLAAIEEAD 299

Query: 301 LILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           ++L + + +S  +    +             FI  KSDL   +  +    I     +G +
Sbjct: 300 IVLAVFDSSSASDEQDERIVELVKNSGKKVFFILNKSDLAFKFDLDLSPSIKISAKKGAD 359

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
           E++ +++  L    +     + S    +         ++ A LN     L++ A  +  A
Sbjct: 360 EIVGRLRDYL--DSQDSSEMMLSSNHQIKQCKDASVAIKRA-LNLLGDELELFAYEINTA 416

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++  IT   +  ++LD +FS FC+GK
Sbjct: 417 IAAISAITRSFERSEILDEMFSHFCLGK 444


>gi|297623423|ref|YP_003704857.1| tRNA modification GTPase TrmE [Truepera radiovictrix DSM 17093]
 gi|297164603|gb|ADI14314.1| tRNA modification GTPase TrmE [Truepera radiovictrix DSM 17093]
          Length = 455

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 145/458 (31%), Positives = 226/458 (49%), Gaps = 33/458 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-------RKASLRYFFGLDG 58
           +TI A++T     A+ I+RLSGP  + V E +   +   P       R    R       
Sbjct: 8   DTIAAIATAPGVGAVGIVRLSGPESYAVAERLFAPRSGAPVAALPPGRVVYGRIVDAATD 67

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ LL+ F +P S+TGED  E   HGG AV+  +L+ L      RLA PGEF+ RAF
Sbjct: 68  ETVDEALLLTFRAPHSYTGEDVLELQTHGGPAVLRRVLD-LCTAHGARLAGPGEFTLRAF 126

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            +G++DL++AE++ DL++++++  RR +  G+S  L+   G   D +T +   I+A  D+
Sbjct: 127 LSGRLDLVQAEAVLDLVNAQSDSARRNAALGLSKALTEQLGLIQDDITRVYGDIQAVFDY 186

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            + E V   + +  L   L     +   +S  + G + + G ++ ++G  NAGKSSL NA
Sbjct: 187 PD-EGVPEAAFQAPLERALG---RVRGLLSTARAGRVAQRGARLALIGRPNAGKSSLLNA 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L     +IV+  PGTTRD L   +D+ G  V   DTAGIR+T D VE  G++      E+
Sbjct: 243 LLGYRRSIVSSTPGTTRDYLEAPVDILGVPVTAVDTAGIRDTGDAVEASGVEAAKEIAEH 302

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTE---------EYDHLI 343
           ADL LLL +       + +  +        + + +KSDL   +                +
Sbjct: 303 ADLGLLLLDSSTPLAPDDRALVGELSPARLLVVASKSDLPPAWDPCAAQRELGVGPVLRV 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
           S+ TGEGL  L   I+  L            +++RH+  L     +LE A         D
Sbjct: 363 SAATGEGLGALKEAIRERLVGDAG-GSALWLTNERHIAALEAVREHLERAKA----APDD 417

Query: 404 IIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
           + A +L  A  +LG++TG     E+ L  IF+ FC+GK
Sbjct: 418 LAALDLEDALKTLGELTGRGEVAEETLAHIFANFCVGK 455


>gi|167750134|ref|ZP_02422261.1| hypothetical protein EUBSIR_01103 [Eubacterium siraeum DSM 15702]
 gi|167656877|gb|EDS01007.1| hypothetical protein EUBSIR_01103 [Eubacterium siraeum DSM 15702]
          Length = 457

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 141/456 (30%), Positives = 218/456 (47%), Gaps = 22/456 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG---LDGR 59
           + I A+ST      +S+IR+SG    +V   +   K P     +       +G    DG 
Sbjct: 3   DCIAAISTPMASGGVSMIRISGADALKVAAKVFIPKYPVRDIEKMDGYTAAYGDITADGT 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            LD G+L++F +P S+TGE++AE   HGGI V   +L+ +       +A  GEF+++A  
Sbjct: 63  KLDDGVLLIFRAPHSYTGENTAEITCHGGIHVTKRVLQAVLSA-GAVMAQAGEFTKQALV 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+ L EAE + DLI++  +     +     G L        +++  I S I   +D+ 
Sbjct: 122 NGKLSLTEAEGVIDLINAGNDQLLSCARAQTDGALYRRIEALCEEIIAITSEIAVWIDYP 181

Query: 180 -EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E ED    +  + L   L +K +I S I+    GEI+RNG    I+G  NAGKS+L N 
Sbjct: 182 DESEDEDEIAKADWLRSTLAVKENIDSLIATYDCGEILRNGIATAIVGKPNAGKSTLMNR 241

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L     +IVTDI GTTRD++   + L   ++K++D AGIRET+D VE  G++R    +  
Sbjct: 242 LTGVQKSIVTDIEGTTRDIVEDTVQLGDIMLKLADCAGIRETEDTVENIGVQRMIERIGT 301

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISS 345
           A LIL + +       + K+ I        I I  KSDL +     +          IS+
Sbjct: 302 AQLILAVFDGSRELSDDDKRLIELLHGKTVIPIINKSDLEARADTAFIENELGKAVIISA 361

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDI 404
            TG G +EL   IK               +++R           ++ A +        D+
Sbjct: 362 KTGGGADELEQAIKQRCGISNLDAGAGFLANERQRQCALSAQAAVDRAYNALHGGMTADV 421

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               L  A  SL +++G    E+++D IFS+FC+GK
Sbjct: 422 AGLELEAALSSLYELSGKTASEEVIDRIFSRFCVGK 457


>gi|269122719|ref|YP_003310896.1| tRNA modification GTPase TrmE [Sebaldella termitidis ATCC 33386]
 gi|268616597|gb|ACZ10965.1| tRNA modification GTPase TrmE [Sebaldella termitidis ATCC 33386]
          Length = 456

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 146/457 (31%), Positives = 236/457 (51%), Gaps = 23/457 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR--YFFGLDGR-IL 61
            ETI A+ST      I IIR+SG   F++   I K K P       +  Y F  DG  +L
Sbjct: 2   FETIAAISTPRGEGGIGIIRISGDDSFEILNKIFKAKNPNKDLGFYKFNYGFIYDGDYML 61

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ + +    P+++T ED  E + HGG  V   ILE L      R A  GEF++RAF NG
Sbjct: 62  DEAMTVRMKGPKTYTCEDVVEINCHGGYLVTQKILE-LVLKKGARHAEKGEFTKRAFMNG 120

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS+E + G+L          L  + + +   LD+ E 
Sbjct: 121 RIDLSQAEAVMDIIQGKTEKSISLSLEQLRGDLRDKIQNLKKLLLDVTAHVNVVLDYPE- 179

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E +       + +++  +  +I+  I+    G+ I+ G K  I+G  N GKS+L N+L K
Sbjct: 180 EGIDEPLPAHLRDNLENVHTEINKLINSYDKGKKIKEGIKTAIIGKPNVGKSTLLNSLLK 239

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ AIVT IPGTTRD++   +++ G  + + DTAGIRET+D+VE  G++++   +E +DL
Sbjct: 240 EERAIVTHIPGTTRDIIEEVINVRGIPLVLVDTAGIRETEDLVENIGVEKSKEIIEKSDL 299

Query: 302 ILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-------SSF 346
           IL + + + +         E+    N   I +  K DL    T E            S+ 
Sbjct: 300 ILFVLDASRELEKDDHQIIELIRENNKKAIILLNKIDLSRKITRENIDFFDGEILEISAK 359

Query: 347 TGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCGLD 403
              G+EE+  +I + +  +         + ++ RH   L +T   +E +    + +  +D
Sbjct: 360 EETGIEEMEERIYNYILEEDVEDSSEKLVITNIRHKSALEKTKEAVENIFETIDSEMPMD 419

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +I+ +L+ A  SL +ITG +  E +LD +FS FC+GK
Sbjct: 420 LISVDLKEALDSLSEITGEISSEDILDHVFSNFCVGK 456


>gi|226294718|gb|EEH50138.1| tRNA modification GTPase GTPBP3 [Paracoccidioides brasiliensis
           Pb18]
          Length = 667

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 158/505 (31%), Positives = 252/505 (49%), Gaps = 73/505 (14%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-----DGRI 60
           TI+A+ST    +AI+IIR+SGP C Q+ + +C K   P PR ASL   +          I
Sbjct: 165 TIYALSTAPGRAAIAIIRVSGPGCVQIYKALCPKSPLPTPRVASLHTLYDPLLPPSINTI 224

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-----------NLRLAN 109
           LD+ +++ FP+P++ TGED  E HVHGG AVV  +L  + +             ++R A 
Sbjct: 225 LDRAMVLYFPAPKTVTGEDLLELHVHGGPAVVKAVLNAIPRCTKVDFTGSNFPLSIRYAE 284

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G S  L++ Y +W  +L + R
Sbjct: 285 PGEFTRRAFLNDRLSLPQIEALGNTLSAETEQQRRLAVRGTSDALATRYERWHQQLLYAR 344

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKN---DISSHISQGKLGEIIRNGYKIVILG 226
             +EA +DFSE++     + + VL+    ++N    I+ H+     GE++RNG K+ +LG
Sbjct: 345 GEMEALIDFSEDQHFDESAEEFVLSVTDEIRNLVRQINLHVENASKGELLRNGIKVALLG 404

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-- 284
             NAGKSSL N +  ++ AIV+   GTTRD++ + +D+ G+  K  D AG+R        
Sbjct: 405 APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGFFCKFGDMAGLRPDHSAQAG 464

Query: 285 --------EKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----------------N 319
                   EKEGI+R       +D+++++  +      +  K                  
Sbjct: 465 QMPPIGAVEKEGIRRAKARALESDVVIVVLSVEECDGGTEAKLVLEPEVVDAVRSCLTLG 524

Query: 320 IDFIFIGTKSD------LYSTYTEEY-----DHLISSFTGEGLEELINKIKSILSNKFKK 368
            + I    K+D      + +   EE+       + S F     +++I  + S    + ++
Sbjct: 525 KNVIVAVNKADKCTTSMITAGTREEFFGRLAREIRSKFPHVAEDQII--LISCREAENEQ 582

Query: 369 LPFSIPSHKRHLY----------HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
                P + + L              QT    E A   E +  +   AE+LR A+  L K
Sbjct: 583 SETPDPGNIQILLGGLHLNDFLSQTEQTPENAENAEQIELNIDIVTAAEHLRFAADCLAK 642

Query: 419 ITGC---VDVEQLLDIIFSKFCIGK 440
           ITG     DVE +L ++F KFC+GK
Sbjct: 643 ITGRGESGDVEDVLGVVFEKFCVGK 667


>gi|303325513|ref|ZP_07355956.1| tRNA modification GTPase TrmE [Desulfovibrio sp. 3_1_syn3]
 gi|302863429|gb|EFL86360.1| tRNA modification GTPase TrmE [Desulfovibrio sp. 3_1_syn3]
          Length = 471

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 138/471 (29%), Positives = 223/471 (47%), Gaps = 39/471 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----PRKASLRYFFGLDGRIL 61
           TI A++T      I I+RLSGP    +   +     P      P            G  L
Sbjct: 3   TIAAIATPPGAGGIGIVRLSGPRAKALLARMFLPLSPRFENFRPWFLHRGRVLDRYGEAL 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  L +  P P +FTGED AE H HGG  +V  +LE + ++   R A  GEFSRRAF NG
Sbjct: 63  DDVLAVFMPGPRTFTGEDMAEIHCHGGPLIVQAVLESILRL-GARQAERGEFSRRAFANG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++A+LI++ +    R S+  + G L        ++L  +R  +   +DF E 
Sbjct: 122 RMDLSQAEAVAELIAAPSREALRYSLNRLDGLLGRRVLALREELEALRVQVCLAVDFPE- 180

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E+V+  +       +  +   +   ++  K   +++ G  +V+ G  NAGKSSL NAL  
Sbjct: 181 EEVECLAPAAFGRAVTEVACSVRRLLAGQKRARVMQQGAVVVLAGAVNAGKSSLLNALLG 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD------DIVEKEGIKRTFLE 295
           ++ A+VTDIPGTTRD L    DL+G  V+++DTAG+R+T+      D VE  G+  +  +
Sbjct: 241 RNRALVTDIPGTTRDFLEEACDLDGLPVRLTDTAGLRQTEEGRHGADAVEALGMALSREK 300

Query: 296 VENADLILLLK----------------EINSKKEISFPKNIDFIFIGTKSDLYS------ 333
           +  AD ILL+                 +  +++ +    +   + +  KSDL S      
Sbjct: 301 LGEADCILLVLDGARLGEAGAAAESCPDAAARQVLELAGDTPVLLVWNKSDLCSPELFPP 360

Query: 334 TYTEEYDHLI-SSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVRYL 390
            + +       S+ +G  ++ L   ++  L       P    +  + R    L + +  L
Sbjct: 361 RWADGLSCCKVSARSGGNVDALAMALRQTLLADGCDRPPSDGLAPNARQALALEEALAEL 420

Query: 391 EMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E    +       D  A  L  A+  LG++TG     ++LD +F++FCIGK
Sbjct: 421 EALEADVRAGQPYDCCAVRLDTAAAHLGEVTGLSSPAEVLDRVFAQFCIGK 471


>gi|325663376|ref|ZP_08151826.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470830|gb|EGC74060.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 400

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 131/398 (32%), Positives = 209/398 (52%), Gaps = 18/398 (4%)

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+++   P S+TGED+ E   HGG+ V+  ILE + K    R A PGEF++RAF
Sbjct: 5   ETIDEVLVLLMRGPHSYTGEDTVEIDCHGGVYVMKRILETVIK-YGARPAEPGEFTKRAF 63

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ D+I S+ E   + S+  + G +     +   ++ +  +FIE  LD 
Sbjct: 64  LNGRLDLSQAEAVIDVIQSKNEYALKSSVSQLKGSVLEKISEIRKEILYHTAFIETALDD 123

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E   +  +  +++   +  L+  I   +     G II+ G + VI+G  NAGKSSL N 
Sbjct: 124 PEHISIDGY-GEKLQGTVEKLQGAIRRLLESADNGRIIKEGIQTVIVGKPNAGKSSLLNV 182

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA K+ AIVTDI GTTRD+L  ++ + G  + I DTAGIR+T+DIVEK G+ +     ++
Sbjct: 183 LAGKERAIVTDIEGTTRDILEENIQINGISLNIIDTAGIRDTEDIVEKIGVDKAKDYAKD 242

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSD--------LYSTYTEEYDHLIS 344
           ADL++ + +       N ++ +   +    + +  KSD        L   YTE+    IS
Sbjct: 243 ADLVIYVVDASRALDENDEQILEMIREKQALILLNKSDLDTVITKELLQKYTEKPMIEIS 302

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGL 402
           +    G+E++ + +K +    K         ++ R    L      LE      E +   
Sbjct: 303 AKQEHGIEKVEHALKEMFFEGKVSFNDEVYITNIRQKTALQNAYDSLEKVIGSIENNMPE 362

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  + +L  A  +LG ITG    E L++ IFSKFC+GK
Sbjct: 363 DFYSIDLMDAYEALGSITGETIGEDLVNEIFSKFCMGK 400


>gi|85709802|ref|ZP_01040867.1| tRNA modification GTPase [Erythrobacter sp. NAP1]
 gi|85688512|gb|EAQ28516.1| tRNA modification GTPase [Erythrobacter sp. NAP1]
          Length = 428

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 162/442 (36%), Positives = 241/442 (54%), Gaps = 16/442 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+ E  TIFAVS+G+ P+AI +IR+SGPS       +  +    PR+ASL      +G  
Sbjct: 1   MSSESSTIFAVSSGSPPAAIGVIRISGPSAGLALRQLAGRS-FTPRRASLAVLRDANGDT 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L++ F  P + TGED AE H HGG AV+  + + L ++  LR A  GEF+RRAF N
Sbjct: 60  LDQALVLWFEGPATATGEDLAELHCHGGRAVLRAVTKALGEIDGLRPAEEGEFTRRAFAN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL EAE LADL+ +ETE+QR  ++  +S  LSS   +W +++  + + +EA LDFS+
Sbjct: 120 GRIDLAEAEGLADLLEAETELQRAAAVANVSSALSSKINEWREQVLRLSAQVEAALDFSD 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E+DV +       N I  L   +   + + K  E ++ G+++V+ G  NAGKS+LFNAL 
Sbjct: 180 EDDVSDLPEGFTWN-IEELSLGLGEWLERPK-SEKLKEGFRVVLAGPPNAGKSTLFNALI 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENA 299
           + + AI + I GTTRDV+   + + G      DTAG+R ++D+ +E  GI+R   E+  A
Sbjct: 238 ESEAAITSPIAGTTRDVIERSVAIGGVPFTFVDTAGLRDDSDEEIEVIGIERARDELARA 297

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHLISSFTGEGLEELINKI 358
           DLIL L       E           IG ++D      +    H  S+ +G+G+EEL   +
Sbjct: 298 DLILWLGVEGQGPE-------GAWEIGARTDAQDHVAKRSARHNCSAISGQGIEELKLDL 350

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
                +   + P     + R    L +    LE A        L +I E LR A V+  +
Sbjct: 351 VQAARSSLPR-PGEAALNARQHARLREAFDALESARTQS---DLLLIGEELRRARVAFDR 406

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           + G    E +LD +F +FCIGK
Sbjct: 407 LVGRATTEDMLDALFGRFCIGK 428


>gi|85375437|ref|YP_459499.1| tRNA modification GTPase TrmE [Erythrobacter litoralis HTCC2594]
 gi|122543372|sp|Q2N6I9|MNME_ERYLH RecName: Full=tRNA modification GTPase mnmE
 gi|84788520|gb|ABC64702.1| tRNA modification GTPase [Erythrobacter litoralis HTCC2594]
          Length = 424

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 162/437 (37%), Positives = 242/437 (55%), Gaps = 16/437 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETIFA+S+GA P+AI +IR+SG       E +     P  RKA+LR     +G+ LD  L
Sbjct: 2   ETIFALSSGAPPAAIGVIRISGTEARGALEALAGS-VPDARKAALRRLRDGEGKTLDDAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++  P P++ TGED  E H HGG AV+  I   L  MP LR A PGEF+RRAF NG+IDL
Sbjct: 61  VLWLPGPDNATGEDCVELHCHGGRAVIAAIERTLGTMPGLRRAEPGEFTRRAFANGRIDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE LADL+ +ETE+QR++      G LS L G W +++  + + +E+ LDFS+E+DV 
Sbjct: 121 AEAEGLADLLFAETELQRQVLQASAGGRLSELVGGWRERVLALSAQVESALDFSDEDDVD 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +      D+  L +++   + + ++ E +R+G ++V  G  NAGKS+LFNAL + + A
Sbjct: 181 ELAPAFY-TDVSTLADELGEWLERPQV-ERLRDGVRVVFAGPPNAGKSTLFNALLQSEAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILL 304
           IV+ I GTTRDVL   +   G    + DTAG+ E  DD +E+ GI R    + +AD++L 
Sbjct: 239 IVSPIAGTTRDVLERPVAFGGTPFTLIDTAGLHEGGDDSIERIGIDRARAALRDADIVLW 298

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-SSFTGEGLEELINKIKSILS 363
           L       +       +   I  +SD+     +    L  S+ TGEG++ L+  ++    
Sbjct: 299 LGPEGEGPD-------NAWEIDAQSDIDERTAKSAPRLRLSAKTGEGIDALVRDLRDAAR 351

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
           +   + P  +  + R    LS+    L   +   +   L I AE+LR A  +  + TG  
Sbjct: 352 DLLPR-PGDVAVNARQHALLSEAAGELAEIT---RGQDLLITAEHLRTARSAFDRFTGRA 407

Query: 424 DVEQLLDIIFSKFCIGK 440
             E +LD +F +FCIGK
Sbjct: 408 TTEDMLDALFGRFCIGK 424


>gi|255994565|ref|ZP_05427700.1| tRNA modification GTPase TrmE [Eubacterium saphenum ATCC 49989]
 gi|255993278|gb|EEU03367.1| tRNA modification GTPase TrmE [Eubacterium saphenum ATCC 49989]
          Length = 453

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 131/455 (28%), Positives = 229/455 (50%), Gaps = 26/455 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-------KPFPRKASLRYFFGLDGR 59
           TI A+ST     AI +I++SG    ++ E + K           +  K         D R
Sbjct: 4   TIAAISTA-GYGAIGVIKISGNRSKKILEELFKNAGKQRIESDKWQNKRLYYGTIEQDNR 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ + +   +P ++T ED  E + HG       IL+ +       LA PGEF++ AF 
Sbjct: 63  VLDEVMAVYMKAPHTYTREDVVEIYTHGNAVCQRRILDAVI-DEGAELAEPGEFTKLAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+IDL +AE++ ++I++++E    L+++G++G+     G    +L  I   +  ++D+ 
Sbjct: 122 NGRIDLTQAEAIIEMINAKSEEAFDLALQGLAGQNERSIGNARVRLQEILVEMAVNIDYP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + ED++  + ++ +  I  + N++   I   +   + R+G ++ ILG  NAGKSSL N L
Sbjct: 182 D-EDIEEINYQKTIESIEDVINELDEVIDITRKRRVYRDGIRVAILGKPNAGKSSLLNEL 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +D AI++DI GTTRDV+   + L G  + + DTAGIRE+D+++EKEGI R++     A
Sbjct: 241 LMEDRAIISDIEGTTRDVIEEQILLSGIPITLIDTAGIRESDNVIEKEGIDRSYKAANEA 300

Query: 300 DLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLISSF 346
           D+++ L +     +      I   +    +   +KSDL  +          +    IS  
Sbjct: 301 DVVVYLIDSTKGPDGEDENVIKRLRADSLVVCFSKSDLPMSAKNKENKGLFDKSIDISIR 360

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDII 405
              G+EEL ++++ I   K            R +Y   +  + L E     +K   LD  
Sbjct: 361 NKSGMEELKSELRKIAEEKNVAKTEG--KRDRTVYEAIKAKKSLNEAKKALKKGLSLDFA 418

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +++ A   LG ITG    E++++ +F +FC+GK
Sbjct: 419 EVDVKNAYAYLGNITGDTASEEVINKVFERFCLGK 453


>gi|26554267|ref|NP_758201.1| tRNA modification GTPase TrmE [Mycoplasma penetrans HF-2]
 gi|81747503|sp|Q8EUV6|MNME_MYCPE RecName: Full=tRNA modification GTPase mnmE
 gi|26454276|dbj|BAC44605.1| thiophene and furan oxidation protein-related GTPase [Mycoplasma
           penetrans HF-2]
          Length = 444

 Score =  352 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 147/444 (33%), Positives = 250/444 (56%), Gaps = 9/444 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T  + SAISIIR+SGP+ +++   I KK+        ++ F   +  I+D+ 
Sbjct: 2   NDTITAIATPNINSAISIIRISGPNTYEIVSKITKKEITKTGYTFVKEFIYQNDLIIDEV 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++ + +P+SFTGED  E + HGG+ + N IL+ L      RLA  GEF++RAF N K+ 
Sbjct: 62  IILKYVAPKSFTGEDLIEINCHGGVLITNKILD-LILESGARLAENGEFTKRAFLNNKLT 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +A S+ +LI S+T++   LS  G+    +  +    +K+ ++   IE ++D+ E EDV
Sbjct: 121 LRQANSINNLIFSKTDIATNLSSNGIINSNNDFFLDIKEKIFYLIGKIEVNIDYPEYEDV 180

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++KE   ++  + + ++  I+       + NG  +VI+G  N GKSSL N+L KK+ 
Sbjct: 181 EQVTAKEFNLEVKEIIDKLNKTINDFNKVSYLYNGLNVVIVGKPNVGKSSLLNSLIKKNK 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+DI GTTRD++T  ++LEG L+   DTAGIRE+ + +E  GIK+T   ++ ADLIL 
Sbjct: 241 AIVSDIKGTTRDLVTESINLEGLLLNFIDTAGIRESKNKIENIGIKKTMASIKEADLILF 300

Query: 305 L------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           L       +   K+ ++  KN ++I +  KSDL      E   +  S   + ++ L+N+I
Sbjct: 301 LIDDSKKIDKKEKEILNLIKNKNYIIVKNKSDLKVNANSELKGISISALKKDVKPLVNEI 360

Query: 359 KSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSL 416
           K+ L      +  ++       L  + Q +  L+ +  N      LD++ E+L++A   +
Sbjct: 361 KTNLKQGDFNIANNLAICSDNELKIIKQVLLVLKKSYANSLSGFPLDLLVEDLKVAYEKI 420

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
             I G  +   ++D +F  FC+GK
Sbjct: 421 CTIMGLSEDLNIIDKMFKNFCLGK 444


>gi|291277158|ref|YP_003516930.1| putative thiophene and furan oxidation protein [Helicobacter
           mustelae 12198]
 gi|290964352|emb|CBG40202.1| putative thiophene and furan oxidation protein [Helicobacter
           mustelae 12198]
          Length = 441

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 118/444 (26%), Positives = 231/444 (52%), Gaps = 21/444 (4%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPES 74
               AI ++RLSG     + + + +KK+  PR A+L + +  +G ++D+ +++ F +P S
Sbjct: 1   MGVGAIGVVRLSGKDALSITQRLTQKKEFLPRYATLCHVYD-EGEVVDEVIVLYFQAPHS 59

Query: 75  FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134
           +T ED  E   HGG+ +   IL  L  +   R+A  GEF++RAF +G+ID  + +++ +L
Sbjct: 60  YTCEDVCEIQCHGGVVLAREIL-RLCLVNGARMATEGEFTKRAFLHGRIDFSQVQAIGNL 118

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           I +++    ++    + G L     Q  + L    +F E  +D+S+ ED+   + +E+  
Sbjct: 119 IQAQSLQASKMMSRQLMGSLRDFVEQSRESLLRALAFSETMIDYSD-EDIPEDALEELGR 177

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI  L+  +   +   K+   I  G+ + I+G  N GKSSL NA+  ++ AIV+++ GTT
Sbjct: 178 DISSLQKQLVQILEFSKMRSKILEGHVLCIVGKPNVGKSSLLNAILMQERAIVSNVAGTT 237

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SK 311
           RD +   + ++G+LV+I DTAGIRE  D +E  G++R+   +E +D++L++ + +    +
Sbjct: 238 RDTIEEVIFIDGHLVRIIDTAGIREGGDEIESIGVQRSLRAIEKSDIVLVVFDASRRLDE 297

Query: 312 KEISFPKNID------FIFIGTKSDLYSTYTEEY---------DHLISSFTGEGLEELIN 356
           +++    ++D         I  K+DL      E             + + +   + EL  
Sbjct: 298 EDLQIIAHLDALPRKQVFAICNKNDLAPLLDVELLKGKLKGVEFFSMQTQSVGDILELKA 357

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           +I   +  +       + +    +  +++ +  LEMA  + +   L++ + +L  A   +
Sbjct: 358 RIGQKILQEMPAQENILLTADYQIDCVTKAIATLEMAEKHLQTLELELFSYHLNDAIEQI 417

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
             +T   ++E++ D +FS FC+GK
Sbjct: 418 SLLTKPYNIEEMFDRMFSIFCLGK 441


>gi|187251665|ref|YP_001876147.1| putative GTPase [Elusimicrobium minutum Pei191]
 gi|186971825|gb|ACC98810.1| putative GTPase [Elusimicrobium minutum Pei191]
          Length = 449

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 155/452 (34%), Positives = 241/452 (53%), Gaps = 20/452 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGRILDK 63
            +TI AV TG+   A+++IR+SGP  +Q    + K    P   +   +  F  D  +LDK
Sbjct: 2   NDTICAVITGSG-GAVAVIRVSGPEAWQCALKLTKSSNGPEVNRVYHQKLFDGD-FLLDK 59

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L+  F +P+SFTG D+ EF  H    +   +L+ L+ M  +R A  GEFS RAF NGK+
Sbjct: 60  ALVTYFKAPKSFTGGDTVEFACHASNYIKGRLLQILSDM-GVRPAKNGEFSMRAFINGKM 118

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL+EA  L DLI+S+       +M  M G+LS+ + +  + L+ + + IE  +D   +E+
Sbjct: 119 DLVEANGLCDLIASDNAASHGAAMNSMEGKLSAEFKRIKNSLSELLAQIEVRID-DVDEE 177

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +Q          +  +K       S    G+ ++ G K+ ILG  NAGKSSL NA+   D
Sbjct: 178 MQPLDPGYTKKILNDVKLRAGDLASTFSTGKFVKEGIKVAILGVPNAGKSSLLNAIVGFD 237

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
            AIV++  GTTRD +    D +G+ + ++DTAGI+E   D+ E+EG++R+    + +D+I
Sbjct: 238 RAIVSEHSGTTRDTVEEIADFKGHKIILTDTAGIKEGALDVAEREGMRRSLNAADKSDII 297

Query: 303 LLLKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTE-----EYDHLISSFTGE 349
           +   + + K   +          K    I    K D+  T  E     +    +SS TGE
Sbjct: 298 IFTADTSKKHLQADHELWNSLKIKGKKIILACNKKDINFTPPEFLYEADKVVNVSSKTGE 357

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAEN 408
           G+EEL N + S+L     K   ++ +   H   L +T + LE A    +KD GL+ +AE+
Sbjct: 358 GVEELKNSVISLLDAGDIKADSNLITSAVHYDMLVKTEKELEEALKALKKDLGLEFLAEH 417

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +R A + L +I G V  + +L IIFSKFC+GK
Sbjct: 418 VRRALLHLKEIIGEVYADDILGIIFSKFCVGK 449


>gi|319945013|ref|ZP_08019275.1| tRNA modification GTPase TrmE [Lautropia mirabilis ATCC 51599]
 gi|319741583|gb|EFV94008.1| tRNA modification GTPase TrmE [Lautropia mirabilis ATCC 51599]
          Length = 518

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 152/519 (29%), Positives = 234/519 (45%), Gaps = 83/519 (15%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPS----CFQVCEFICKKKKPFPRKASLRYFFGLDG 58
            +K  I A++T     AI ++R+S P          + +  +++   RKA+   F   D 
Sbjct: 2   QDKRPICAIATAPGQGAIGVVRVSAPEPDIITALAADILGPERRLVARKAAYGPFLAADA 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK---MPNLRLANPGEFSR 115
           + +D GL + FP+P S+TGE   E   HGG  V   +L  + +      +RLA PGEF+ 
Sbjct: 62  QPIDYGLALWFPAPHSYTGEHILELQGHGGPVVQQILLRRVLQVGAAFGIRLAEPGEFTE 121

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL++AE++ADLI + TE   R +   + G  S       ++L  +R  +EA 
Sbjct: 122 RAFLNDKLDLVQAEAVADLIEASTEQAARSATRSLQGVFSRQIDDLAEQLLTLRMLVEAT 181

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF E E++      +    +  + + +       + G  +R G  +V+ G  N GKSSL
Sbjct: 182 LDFPE-EEIDFLQKADAAGRLARIDDTLRRLFDTAQSGARLRQGLNVVLTGAPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR------------ETDDI 283
            NALA  +VAIVT I GTTRD +   + +EG  + + DTAG+R             T   
Sbjct: 241 LNALAGAEVAIVTPIAGTTRDRVIEQISIEGVPINLIDTAGLRDTDDPVEKIGIQRTWAE 300

Query: 284 VEKEGIK---RTFLEVENAD-------------------LI------------------- 302
           +EK  +    R   E+   D                   +I                   
Sbjct: 301 IEKADVVVHLRAADELAREDENQTPGETGQGNGKKAVPAIIPDAGTGSSPEQRSGQGQTG 360

Query: 303 ---LLLKEINSKKEISFPKNIDFIFIGTKSDLY-------STYTEEYDHLISSFT----- 347
              L +  + +  E   P +   + +  K DL        S  ++   H  SS T     
Sbjct: 361 SAPLDISRLEAAIEARVPASARRLTVINKIDLVEGEGQLASGMSDGAPHAQSSATEILRL 420

Query: 348 ----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EKDCG 401
               G+G+E    K+  I   +  +      + +RHL  LS+ + +L+ A  +    D  
Sbjct: 421 SARTGQGIEAFRRKLLDIAGFQPGQ-EGVFIARERHLQALSEALSHLQNARQHVSLGDQA 479

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD+ AE LRLA  +LG+ITG V  + LL +IFS+FCIGK
Sbjct: 480 LDLFAEELRLAHQALGRITGAVTADDLLGVIFSRFCIGK 518


>gi|294101372|ref|YP_003553230.1| tRNA modification GTPase TrmE [Aminobacterium colombiense DSM
           12261]
 gi|293616352|gb|ADE56506.1| tRNA modification GTPase TrmE [Aminobacterium colombiense DSM
           12261]
          Length = 455

 Score =  351 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 142/456 (31%), Positives = 231/456 (50%), Gaps = 23/456 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDGRI 60
           ++ I A+ST    + I+I+RLSG +  ++ + +    +P     PR     Y        
Sbjct: 3   EDIIAAISTAWGEAGIAIVRLSGFNSRELADEVVHGIRPLSETPPRVLRNGYLLDEKKEP 62

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L   F +P+S+TGE+  E   HGG  V    LE L      RLA PGEF+RRAF N
Sbjct: 63  IDQVLFSWFRAPKSYTGEEMVEISTHGGTLVAQKCLESLI-GKGARLAEPGEFTRRAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GKIDL +AE++  +I S++E   R +   + GELSS      +++  I S IE  LDF E
Sbjct: 122 GKIDLSQAEAVLGIIRSKSEEALRAATRTLRGELSSFAKDIYNEMLTISSSIEVGLDFPE 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    ++ V + +  LK  +   + +   G ++R G ++ ++G  N GKSSL NAL 
Sbjct: 182 -EDIPFIENEGVESALYTLKQGLEDLLDRCNTGFLLREGIRVALVGRPNVGKSSLLNALL 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K+  AIVT IPGTTRD++   L   G  +++ DTAGI    D +E  GI R    +  AD
Sbjct: 241 KESRAIVTAIPGTTRDLIEEVLTYRGIPIRLVDTAGIGAPGDEIEAMGIARAEKAMMEAD 300

Query: 301 LILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEEYD---------HLISS 345
           + + + + +   +  +++  + I   + I    K+DL    +EE            +IS+
Sbjct: 301 VRIWVIDGSEPLTPADLALVQKISATNHIVTINKADLPLVISEEMINGLLPQSPVFVISA 360

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDI 404
              EG+E L + I + ++     L   + +  R +  + + ++ L    S   +  G D+
Sbjct: 361 EKREGIEALKDAIVTNIAGG-GTLTSGLNASSRQVEEIRKAIQALGQGISALNEGMGQDV 419

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A  L      + ++ G    + LL+ IFS+FC+GK
Sbjct: 420 VAACLYDGRTCMERLLGLSVDDALLETIFSQFCVGK 455


>gi|331086948|ref|ZP_08336024.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409609|gb|EGG89048.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 400

 Score =  351 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 132/398 (33%), Positives = 209/398 (52%), Gaps = 18/398 (4%)

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+++   P S+TGED+ E   HGG+ V+  ILE + K    R A PGEF++RAF
Sbjct: 5   ETIDEVLVLLMRGPHSYTGEDTVEIDCHGGVYVMKRILETVIK-YGARPAEPGEFTKRAF 63

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ D+I S+ E   + S+  + G +     +   ++ +  +FIE  LD 
Sbjct: 64  LNGRLDLSQAEAVIDVIQSKNEYALKSSVSQLKGSVLEKISEIRKEILYHTAFIETALDD 123

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E   +  +  +++   +  L+  I   +     G II+ G + VI+G  NAGKSSL N 
Sbjct: 124 PEHISIDGY-GEKLQGTVEKLQGAIRRLLESADNGRIIKEGIQTVIVGKPNAGKSSLLNV 182

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           LA K+ AIVTDI GTTRD+L  ++ + G  + I DTAGIR+T+DIVEK G+ +     ++
Sbjct: 183 LAGKERAIVTDIEGTTRDILEENIQINGISLNIIDTAGIRDTEDIVEKIGVDKAKDYAKD 242

Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSD--------LYSTYTEEYDHLIS 344
           ADLI+ + +       N ++ +   +    + +  KSD        L   YTE+    IS
Sbjct: 243 ADLIIYVVDASRALDENDEQILEMIREKQALILLNKSDLDTVITKELLQKYTEKPMIEIS 302

Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGL 402
           +    G+E++ + +K +    K         ++ R    L      LE      E +   
Sbjct: 303 AKQEHGIEKVEHALKEMFFEGKVSFNDEVYITNIRQKTALQNAYDSLEKVIGSIENNMPE 362

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D  + +L  A  +LG ITG    E L++ IFSKFC+GK
Sbjct: 363 DFYSIDLMDAYEALGSITGETIGEDLVNEIFSKFCMGK 400


>gi|157164829|ref|YP_001466649.1| tRNA modification GTPase TrmE [Campylobacter concisus 13826]
 gi|205829127|sp|A7ZCZ1|MNME_CAMC1 RecName: Full=tRNA modification GTPase mnmE
 gi|112800067|gb|EAT97411.1| tRNA modification GTPase TrmE [Campylobacter concisus 13826]
          Length = 441

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 141/444 (31%), Positives = 227/444 (51%), Gaps = 12/444 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            ETI A++T     ++SI+RLSG         + K     PR A L   + +D  ILD+G
Sbjct: 2   SETIAALATAYGIGSVSIVRLSGKDALATSLKLLKLSNLEPRYAKLAKIYSIDDEILDEG 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGED  EF  HGG+ V   IL EL +    RLA PGEFS+RAF NGK+D
Sbjct: 62  IVIYFKAPASFTGEDIVEFQTHGGVMVSERILNELIRA-GARLAMPGEFSKRAFLNGKMD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++  LI+S++E+  ++    M G+LS   G+   ++    +F+E  +D+++ +D+
Sbjct: 121 LAKAEAMQGLITSKSEIAAKILTRQMQGDLSKFVGEIRGEVVKTLAFVETMIDYAD-DDL 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                ++    +L     +    +  +    + +G+KI I+G  N GKSS+ N+    + 
Sbjct: 180 PANLLEQTKLMLLKNSEKLERIATLSEQRRGLIDGFKIAIVGKPNVGKSSILNSFLAYER 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+D  GTTRD +  +  +  +LV+I DTAGIR+    +E+ GI  +   +  AD+IL 
Sbjct: 240 AIVSDEAGTTRDRIEENFKIGSHLVRIIDTAGIRKDAGKIEQIGINYSISAINEADIILA 299

Query: 305 LKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + + +   +    +        N    FI  KSDL   +  E D  I          ++ 
Sbjct: 300 VFDGSCPSDEQDKEIIRLISNSNKKAFFILNKSDLAFKFDIELDGAIKISAKNDSSVVLK 359

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           +++  L  K +     + S  R +    +    L+ A L   +  L+I A  L  A  +L
Sbjct: 360 ELEGYL--KTQDTDEIMLSSNRQILSCKEASEALKRAFLRLNEEELEIFAYELNSAIKAL 417

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
             IT   +  ++LD +FS FC+GK
Sbjct: 418 ASITKPFERSEILDEMFSHFCLGK 441


>gi|262038122|ref|ZP_06011523.1| tRNA modification GTPase TrmE [Leptotrichia goodfellowii F0264]
 gi|261747846|gb|EEY35284.1| tRNA modification GTPase TrmE [Leptotrichia goodfellowii F0264]
          Length = 455

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 139/465 (29%), Positives = 237/465 (50%), Gaps = 41/465 (8%)

Query: 5   KETIFAVSTG----------ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF 54
            +TI A+ST                           F++   I   K P       ++ +
Sbjct: 3   FDTIAAISTPKGEGGIGIIRISG----------DKSFEILSKIFNMKNPNKDLGFYKFNY 52

Query: 55  GL---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
           G    +G+I+D+ + +   +P+++T ED  E + HGG  +   +LE + K    R A  G
Sbjct: 53  GFVHDNGKIIDEVMTVRMKAPKTYTCEDIVEINCHGGNLITEKVLELVLK-NGARHAEQG 111

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF++RAF NG+IDL +AE++ DLI  +TE    LSM+ + G+L     ++   L  + + 
Sbjct: 112 EFTKRAFMNGRIDLSQAEAVMDLIQGKTEKSISLSMDQLRGDLKEKINKFKKALLDVTAH 171

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           +   LD+ E E + +   + +  ++  +  + +  I     G+ I+ G K VI+G  N G
Sbjct: 172 VNVVLDYPE-EGIDDPLPENLRENLEKVYKEANILIESYDKGKKIKEGIKTVIVGKPNVG 230

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KS+L N+L K++ AIVT IPGTTRD++   ++++G  + + DTAGIR+T+DIVE  G+++
Sbjct: 231 KSTLLNSLLKEERAIVTHIPGTTRDIIEEIINIKGIPLVLVDTAGIRKTEDIVENIGVEK 290

Query: 292 TFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDL-----YSTYTEE 338
           +   +E ADLILL+ + +    K++I   +     N   I +  K DL      S Y  E
Sbjct: 291 SKQFIEKADLILLVLDASKELEKEDIEVIEKIKKNNKKTIVLLNKIDLERKIDLSNYDLE 350

Query: 339 YDHLISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYL-EMASL 395
               IS+    G++E+  KI S +  +         I ++ RH   L +T   +  +   
Sbjct: 351 NILEISAKDNIGIDEMEEKIYSYIVEEDVENTSEKLIITNIRHKTALEKTKEAVNNIFET 410

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    +D+I+ +L+ A  +L +ITG +  E +LD +F  FC+GK
Sbjct: 411 IDNGMPMDLISVDLKEALDALSEITGEISSEDILDHVFGNFCVGK 455


>gi|218885988|ref|YP_002435309.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756942|gb|ACL07841.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 478

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 139/481 (28%), Positives = 231/481 (48%), Gaps = 47/481 (9%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-------G 55
            ++ TI A++T      + IIR+SGP    +   +       PR A  R +         
Sbjct: 2   RQEGTIAAIATPPGHGGVGIIRISGPDSHAILGRLFLPAS--PRFAGFRPWTLHRGRACD 59

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G  LD  L +  P P +FTGED AE H HGG AV+  +LE        RLA  GEF+R
Sbjct: 60  AMGAPLDDVLAVAMPGPRTFTGEDVAEIHCHGGPAVLAAVLEAAC-ACGARLAGRGEFTR 118

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++A++I++  +   RL+   + G L +   +   +L  +R+ +   
Sbjct: 119 RAFLNGRMDLTQAEAVAEMIAAPAQGGLRLAQARLQGLLGTRVAELRARLLDLRAQLCVA 178

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF E+E V   + +  + +   +   +   +S  + G   + G  +V+ GH NAGKSSL
Sbjct: 179 VDFPEDE-VDCLAPEAFVAECDAVAAGVRGLLSAHERGRCWQEGALVVLAGHVNAGKSSL 237

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  +  AIVTD+PGTTRD +   + L G  V++ DTAG+R+T DIVE+EG++ +   
Sbjct: 238 MNALLGRRRAIVTDMPGTTRDFIEEPVQLAGLPVRLVDTAGLRDTGDIVEQEGVRISRDL 297

Query: 296 VENADLILLLKEINS------KKEISFPKNID------------FIFIGTKSDLYSTYTE 337
           V  ADL+LL+ +  +      ++ +   ++               + +  K+DL +  + 
Sbjct: 298 VAQADLVLLVVDAAAGLGHAERELLRHVRDQHAQVGRPGRPGGRVLVVLNKTDLAAEASA 357

Query: 338 EYDHLI----------SSFTGEGLEELINKIKSIL-------SNKFKKLPFSIPSHKRHL 380
            +              S+  G G++EL    ++++           +     +  + R  
Sbjct: 358 AFRCPTEVEGCPCVAVSALRGLGVDELAAAARAMVLAGLGGDDAGGEPESGDLAPNLRQA 417

Query: 381 YHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439
             L + +  L+    +       D+ +  L  A   L +ITG     ++L+ IFS FCIG
Sbjct: 418 QVLRRALDELDALVADVRAGVPYDLCSVRLDGACAVLSEITGETTPAEVLEHIFSSFCIG 477

Query: 440 K 440
           K
Sbjct: 478 K 478


>gi|225077529|ref|ZP_03720728.1| hypothetical protein NEIFLAOT_02592 [Neisseria flavescens
           NRL30031/H210]
 gi|284800154|ref|ZP_06390566.1| tRNA modification GTPase TrmE [Neisseria subflava NJ9703]
 gi|224951149|gb|EEG32358.1| hypothetical protein NEIFLAOT_02592 [Neisseria flavescens
           NRL30031/H210]
 gi|284795881|gb|EFC51228.1| tRNA modification GTPase TrmE [Neisseria subflava NJ9703]
          Length = 335

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 122/310 (39%), Positives = 185/310 (59%), Gaps = 2/310 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  + TI A++T      + +IRLSG +   + + +   K P PR A    F G DG+ 
Sbjct: 1   MSATQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGQP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+L+ F +P SFTGED  E   HGG  V++ +L    ++   R+A PGEF++RAF N
Sbjct: 61  IDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + ++   R+++  + G  S    + +D L  +R  +EA LDF E
Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  + + ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 180 -EDIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D+AIVTDI GTTRD +   + L+G  V I DTAG+RETDD+VE+ GI+R+   V  AD
Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298

Query: 301 LILLLKEINS 310
           + L+L +   
Sbjct: 299 VALILIDPRE 308


>gi|227810188|gb|ACP41241.1| tRNA modification GTPase [Actinobacillus minor]
          Length = 416

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 138/419 (32%), Positives = 233/419 (55%), Gaps = 21/419 (5%)

Query: 22  IIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSA 81
           I+R+SGP   +V + +  K+   PR A+   F   DG +LD+G+ + F +P SFTGED  
Sbjct: 1   ILRVSGPLASEVAKAVVGKEL-KPRLANYLPFMDTDGTVLDQGIALFFKAPNSFTGEDVL 59

Query: 82  EFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141
           E   HGG  +++ +L+ + ++  +R+A  GEFS +AF N K+DL +AE++ADLI + +E 
Sbjct: 60  ELQGHGGQVILDLLLKRILEVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDATSEQ 119

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
             R +++ + GE S+   + +D + ++R+++EA +DF + E++   +  ++   +  +  
Sbjct: 120 AARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPD-EEIDFLADGKIEAKLNDIIT 178

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +++   + K G I+R G K+VI G  NAGKSSL NALA ++ AIVT+I GTTRDVL   
Sbjct: 179 QLANVRKEAKQGSILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREH 238

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-------- 313
           + ++G  + I DTAG+R+  D VE+ GI+R + E+  AD +LL+ + + ++         
Sbjct: 239 IHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQADVFKTEWA 298

Query: 314 ---ISFPKNIDFIFIGTKSDL--YSTYTEEYD----HLISSFTGEGLEELINKIKSILSN 364
                 P+NI    I  K DL   S   E+ D      +S+ T  G++ L   +K  +  
Sbjct: 299 EFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTIIRLSAQTKVGVDLLREHLKQSMGY 358

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSLGKITGC 422
           +         + +RHL  L     +LE   +        +++AE LR+   +L +ITG 
Sbjct: 359 Q-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAGELLAEELRMVQNALSEITGQ 416


>gi|94266686|ref|ZP_01290361.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [delta proteobacterium MLMS-1]
 gi|93452674|gb|EAT03231.1| tRNA modification GTPase TrmE:Small GTP-binding protein
           domain:GTP-binding [delta proteobacterium MLMS-1]
          Length = 500

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 144/506 (28%), Positives = 240/506 (47%), Gaps = 82/506 (16%)

Query: 4   EKETIFAVSTGAL------------PSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-- 49
           +++TI A++T                +A            +V + + +  +P PR+ S  
Sbjct: 8   DQQTIAAIATPPGAGGIGIIRISGARAA------------EVLQQLFRPARP-PREPSAH 54

Query: 50  -----LRYFF---GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK 101
                LRY +      GR+LD+ + +   +P ++T ED  E H HGG  V+  IL  +  
Sbjct: 55  LPSHRLRYGWISEPASGRLLDEVMAVYMAAPATYTREDVVEIHGHGGHLVLREILALILT 114

Query: 102 MPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQW 161
           +  +R A PGEF++RAF NG+IDL  AE++ +L+++ET     L+++ ++G L       
Sbjct: 115 IKGVRAAEPGEFTKRAFLNGRIDLTRAEAVIELLNAETRQGVELAIQQLAGGLQQRVEAV 174

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
              L  + + +E  +DF +E+D     +       + +   +   +SQ + G I R G  
Sbjct: 175 RQALLAMLAVVEVAIDFPDEDDEIVDHAGLQQQLAVAVVAPLEQLLSQRRRGRIYREGAA 234

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKSSL NAL +++ AIVT +PGTTRD +   +++ G  V++ DTAGIR+T 
Sbjct: 235 VAILGRPNVGKSSLLNALLREERAIVTPVPGTTRDTIEESIEVNGVPVRLIDTAGIRDTP 294

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISF---PKNIDFIFIGTKSDLY--- 332
           + VE+ GI+R+      ADL+LLL +  S    ++++        + + +  K DL    
Sbjct: 295 ESVEEIGIERSRRHGREADLVLLLVDATSGLVPEDLTLYQSLAGQNLVLVVNKLDLPGPD 354

Query: 333 ------------------------------------STYTEEYDHLISSFTGEGLEELIN 356
                                                 + ++    IS+ TG+GLEEL  
Sbjct: 355 GQPPKKGDTIPIFHTRREKRETPAMKNRYGVPLFWRQRFADQPLVGISARTGQGLEELTE 414

Query: 357 KIKSILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDIIAENLRLASV 414
            I + L+    + P  +   + RH   L   +      +   +  G  +++A  L+ A  
Sbjct: 415 AIFTALTGGRHRDPEHACVPNARHEAALQAALVAARRTTTTLQSGGAPELLAVELQGALA 474

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LG+I G    E+LLD IFS+FCIGK
Sbjct: 475 ALGEIVGETSGEELLDAIFSRFCIGK 500


>gi|325970663|ref|YP_004246854.1| tRNA modification GTPase mnmE [Spirochaeta sp. Buddy]
 gi|324025901|gb|ADY12660.1| tRNA modification GTPase mnmE [Spirochaeta sp. Buddy]
          Length = 442

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 139/444 (31%), Positives = 234/444 (52%), Gaps = 14/444 (3%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS----LRYFFGLDGR 59
             + I+A++T    SA++++R+SG  C  +      + K     A+      Y    +G 
Sbjct: 6   TDDIIYALATAWAQSALAVVRVSGQGCRNLLSTRFSRPKALIEAANATLVHGYLRDGNGS 65

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ +  V+     +T E+S EF  HG +AV+  IL  L     +R A  GEF+ RAF 
Sbjct: 66  AIDEVVAAVYTDGHGYTKEESVEFSCHGSLAVIKEIL-ALFNHLGMRSAEGGEFTFRAFL 124

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           +G++DL +AE++ +L+SS++++ R L++  + G L        ++L  I + +E  LD++
Sbjct: 125 HGRLDLTQAEAVGELVSSQSQISRSLALGRLEGSLRGRIAAMKEQLLGIVAAVEVQLDYA 184

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+E  +    +  L D   L   +    +  ++G + R G +IV+ G +NAGKSSLFN L
Sbjct: 185 EDELDEFVFPRSGLVD---LIKQVKDLSATYQIGRLYRMGARIVLAGSTNAGKSSLFNLL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K++ +IV+ + GTTRD +  DLD++G  +++ DTAG+RE+DD +E EGI+RT   +  A
Sbjct: 242 LKQERSIVSPVRGTTRDYIEADLDVQGIPIRLYDTAGLRESDDAIESEGIRRTERLIGQA 301

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
           DL++ L +      +   ++   + +  KSDL            S+ TGEG+  L+ +I 
Sbjct: 302 DLVVYLVDSTELGHVP-KEDERTLVVYNKSDLVKPPKGRMAI--SAQTGEGVPNLLAEIA 358

Query: 360 SILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAENLRLASVSL 416
             L+           +   +R    L    + L+    L ++D  LDI A  L  A  +L
Sbjct: 359 KRLAKGSVSSGDEQVVIESERQHTLLENAAQALQRCLVLVDQDIPLDITAVELGEALQNL 418

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
           G++TG V    +L  IFS FC+GK
Sbjct: 419 GELTGEVTPADILQKIFSGFCVGK 442


>gi|322381046|ref|ZP_08055074.1| tRNA modification GTPase TrmE [Helicobacter suis HS5]
 gi|321146516|gb|EFX41388.1| tRNA modification GTPase TrmE [Helicobacter suis HS5]
          Length = 455

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 124/458 (27%), Positives = 219/458 (47%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M     TI A++T     AI+I++LSG     +   +  +++  PR A+L   +   G +
Sbjct: 1   MTFTNSTIAAIATPPGLGAIAIVKLSGSKSLSILNALSHRQRFTPRMATLVSLYDATGDL 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L + F +P S+TGED  E   HGG+ V   ILE   K     LA  GEF++RAF N
Sbjct: 61  LDQCLALYFKAPHSYTGEDVVELQCHGGMVVARLILEACLK-QGAILAKGGEFTQRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            ++DL + ++LA L+ S+     ++  + + G L          L  + +  E  +D++E
Sbjct: 120 NRMDLSQVQALAKLLESQNANMVKVMAKQIKGALKDFVQTTRTALLKLLASSEVLIDYAE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+       +  D+  ++  +   +   +       GY + I+G  N GKSSL NAL 
Sbjct: 180 -EDLPLNLLDRMQEDLEQIEQQLLKVLEVSRARSAKLEGYTLSIIGKPNVGKSSLLNALL 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ A+V++I GTTRD +   + L G  +KI DTAGIR ++D +E+ GI ++   ++ +D
Sbjct: 239 LEERALVSEIAGTTRDTIEEVISLYGSSLKIIDTAGIRTSNDPIERLGIAKSKQRMQESD 298

Query: 301 LILLLKEINSKKE---------ISFPKNIDFIFIGTKSD---------LYSTYTEEYDHL 342
           +IL L +++S  +         +   ++     I  K+D         L +     +   
Sbjct: 299 IILALFDLSSPLDHQDQVILELLQANQDKILCVIFNKNDCPTKLDTTALLAVLPPLFAPA 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S  T E    L+ K    L          I +       L   ++ L+ A    +   L
Sbjct: 359 MSLNTKEPCLPLLKKALKPLFEHNPN-DSLILATLTQQNSLELGIKSLQSAKKPLQHAEL 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ + +++ A  S+  I+     +++LD +F +FC+GK
Sbjct: 418 ELFSYHIKDALESIVAISTPYYTDEMLDAMFQEFCLGK 455


>gi|300176248|emb|CBK23559.2| unnamed protein product [Blastocystis hominis]
          Length = 492

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 154/482 (31%), Positives = 255/482 (52%), Gaps = 55/482 (11%)

Query: 14  GALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFG-LDGRILDKGLLI-VF 69
             + S +++IR+SG + F   + +  ++   P PR+ASLR         ++DKGL++  F
Sbjct: 11  PLVKSGVAVIRVSGSNAFDAIKQMTSEQCSFPTPRQASLRSILDSQTKEVIDKGLVMHRF 70

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P   SFT ED  EFHVHG  AVVN  L  L+ +P  R+A PGEF++RAF NGK+  LE E
Sbjct: 71  PLSLSFTDEDVVEFHVHGSPAVVNATLRSLSHIPYFRVAEPGEFTKRAFLNGKMSFLEVE 130

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           +LADL+++ETE QR+ ++ G+SGELS+L  +W  +L H  +  E  L+F+++ D ++   
Sbjct: 131 ALADLLNAETETQRQQAIHGLSGELSALCWKWRSQLMHSLAHAETILEFADDMDEESVLL 190

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            +    +  +++ +   +   +  ++++ G ++ + G  N GKSSL N L   + AIV+ 
Sbjct: 191 ADATRQLGSIRDSMQQLLRGFRRSQLVKEGIRVTLFGPPNVGKSSLLNVLTGSEEAIVSA 250

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-- 307
           IPGTTRDVL +DLDLEG+ V + DTAG+ +++++VE+EG+ R    V  + + +++ +  
Sbjct: 251 IPGTTRDVLKVDLDLEGWKVILQDTAGLHDSEEVVEREGMNRARAAVAESSVRMVVVDVA 310

Query: 308 -------------INSKKEISFPKNI------------------DFIFIGTKSDLYSTYT 336
                        I  K E      +                  + + +  KSDL S   
Sbjct: 311 RDAKENVESMMREIEGKGEAERKGKMGESCLEGKENTKKSQLEGEVLVVLNKSDLVSKEQ 370

Query: 337 EE--------------YDHLISSFTGEGLEELINKIKSIL----SNKFKKLPFSIPSHKR 378
            E                  IS    +G+E ++  +K ++        +     + + +R
Sbjct: 371 VEEVREFVLNKYPFVQNVLSISCKQKQGIEAVLTALKEVVGRVAHENTEGDHSQLITRER 430

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
               L Q +  ++      ++  +D+ AE LR    SL ++TG VDVE++LDI+FS+FCI
Sbjct: 431 QRNCLEQCISSIDRCMELSEEDLVDLEAEELRYCLKSLSRLTGEVDVEEILDIVFSEFCI 490

Query: 439 GK 440
           GK
Sbjct: 491 GK 492


>gi|315058397|gb|ADT72726.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 442

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 231/447 (51%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ 
Sbjct: 2   SDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGED  EF +HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+ 
Sbjct: 62  IMIYFKAPYSFTGEDIVEFQIHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMT 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D+++++  
Sbjct: 121 PLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLP 180

Query: 185 QNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +   +  +   +  +I + +SQ K G  +  G+KI I+G  N GKSSL NAL   
Sbjct: 181 PDLLEQISTMCEENSKILKEIYT-LSQSKKG--LIEGFKIAIVGKPNVGKSSLLNALLSY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D++E+ G+  +   +E+AD+I
Sbjct: 238 ERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSLEDADII 297

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG-LEE 353
           L + + +  ++    K        +    +I  KSDL + +    +      + +  +  
Sbjct: 298 LAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSAQKDITL 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  ++++ L++        + S    +     +   +  A    ++  L++ A  L LA 
Sbjct: 358 LKEELQNYLNSF--DSEGIMVSSLDLINACKISSEAIFRAKGLLEESSLELFAFELNLAI 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + T     +++LD +F  FC+GK
Sbjct: 416 NELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|322379149|ref|ZP_08053545.1| tRNA modification GTPase TrmE [Helicobacter suis HS1]
 gi|321148412|gb|EFX42916.1| tRNA modification GTPase TrmE [Helicobacter suis HS1]
          Length = 455

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 124/458 (27%), Positives = 218/458 (47%), Gaps = 21/458 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M     TI A++T     AI+I++LSG     +   +  +++  PR A+L   +   G +
Sbjct: 1   MTFTNSTIAAIATPPGLGAIAIVKLSGSKSLSILNALSHRQRFTPRMATLVSLYDATGDL 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L + F +P S+TGED  E   HGG+ V   ILE   K     LA  GEF++RAF N
Sbjct: 61  LDQCLALYFKAPHSYTGEDVVELQCHGGMVVARLILEACLK-QGAILAKGGEFTQRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            ++DL + ++LA L+ S+     +   + + G L          L  + +  E  +D++E
Sbjct: 120 NRMDLSQVQALAKLLESQNANMVKAMAKQIKGALKDFVQTTRTALLKLLASSEVLIDYAE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+       +  D+  ++  +   +   +       GY + I+G  N GKSSL NAL 
Sbjct: 180 -EDLPLNLLDRMQEDLEQIEQQLLKVLEVSRARSAKLEGYTLSIIGKPNVGKSSLLNALL 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ A+V++I GTTRD +   + L G  +KI DTAGIR ++D +E+ GI ++   ++ +D
Sbjct: 239 LEERALVSEIAGTTRDTIEEVISLYGSSLKIIDTAGIRTSNDPIERLGIAKSKQRMQESD 298

Query: 301 LILLLKEINSKKE---------ISFPKNIDFIFIGTKSD---------LYSTYTEEYDHL 342
           +IL L +++S  +         +   ++     I  K+D         L +     +   
Sbjct: 299 IILALFDLSSPLDHQDQVILELLQANQDKILCVIFNKNDCPTKLDTTALLAVLPPLFAPA 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S  T E    L+ K    L          I +       L   ++ L+ A    +   L
Sbjct: 359 MSLNTKEPCLPLLKKALKPLFEHNPN-DSLILATLTQQNSLELGIKSLQSAKKPLQHAEL 417

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ + +++ A  S+  I+     +++LD +F +FC+GK
Sbjct: 418 ELFSYHIKDALESIVAISTPYYTDEMLDAMFQEFCLGK 455


>gi|295691564|ref|YP_003595257.1| tRNA modification GTPase TrmE [Caulobacter segnis ATCC 21756]
 gi|295433467|gb|ADG12639.1| tRNA modification GTPase TrmE [Caulobacter segnis ATCC 21756]
          Length = 446

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 239/430 (55%), Gaps = 19/430 (4%)

Query: 25  LSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFH 84
           +SGP+  +  E +  +  P PR A+LR     DG  LD+ L++ F  P S+TGEDSAEFH
Sbjct: 22  ISGPATLRTVEALAGRA-PAPRMAALRKLR-HDGVELDEALVLRFEGPASYTGEDSAEFH 79

Query: 85  VHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRR 144
           VHGG AVV  +         LRLA PGEF+RRAFENGK+DL +AE +ADLI +ETE QRR
Sbjct: 80  VHGGRAVVEAL-LSALSGLGLRLAEPGEFTRRAFENGKLDLAQAEGVADLIDAETEAQRR 138

Query: 145 LSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS 204
            ++  + G LS  Y +W D L    + +EA +DF + ED+    ++     +  L  ++ 
Sbjct: 139 QALGQVGGALSQRYDRWRDLLVQSLAMLEAAVDFPD-EDLPEEVAERARPGLRVLAEELD 197

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           + ++    G  +R+GY+I ++G  NAGKS+L N L ++D AIVTD PGTTRDV+ + L L
Sbjct: 198 AALADVSRGRRVRDGYRIALVGAPNAGKSTLLNGLVERDAAIVTDTPGTTRDVIEVPLVL 257

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPKNID 321
            GY V I+DTAG+RET+D +E EG++R     E ADL L + +   +   + +       
Sbjct: 258 GGYRVLIADTAGLRETEDAIEAEGVRRARRWAEEADLRLWVVDGFHVKQVEALESTVRPG 317

Query: 322 FIFIGTKSDLYSTYTEEYDHLISSFTGE-----------GLEELINKIKSILSNKFKKLP 370
              I  K+D+ +    E         G             + EL   + + +        
Sbjct: 318 DWLILNKADIAAADALEEASARWVSEGLVVRQLAARQEGAVAELRTDLAAHVIEALSGAE 377

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
           F   +  RH   LS+   YL  A L++    +++ AE++RLA+ +L KITG VD E +L 
Sbjct: 378 FPAATRLRHAERLSEARDYLARA-LSDIGLEVELAAEDVRLAARALEKITGRVDPEDVLG 436

Query: 431 IIFSKFCIGK 440
            +FS FCIGK
Sbjct: 437 RVFSTFCIGK 446


>gi|317013217|gb|ADU83825.1| tRNA modification GTPase TrmE [Helicobacter pylori Lithuania75]
          Length = 450

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 138/453 (30%), Positives = 223/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     AISII++SG +   V + + +K+   PR A +R  F  +G +LDK 
Sbjct: 2   NDTIAAIATPLGKGAISIIKISGHNALNVLKQLTQKQDFTPRYAYVRDIFS-NGVLLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LVIYFKAPYSFTGEDMCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +    L  + +  E  +D+SE ED+
Sbjct: 120 LSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARSDLLKLLASSEVLIDYSE-EDI 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +     V  ++          +      +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 179 PSDFLDGVSQNLEKQIASFKDLLDFSNTQKQRNKGHALSIVGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 239 ALVSDIKGTTRDTIEEIIELQGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDIILG 298

Query: 305 LKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSHLKIPYSLLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q +  LE A    ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQKI-ALENAITELQNAKNHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  A  +L  +T   +  Q+LD +F++FC+GK
Sbjct: 418 HILSAIENLNLLTRPYETSQMLDSMFAEFCLGK 450


>gi|57167879|ref|ZP_00367019.1| tRNA modification GTPase TrmE [Campylobacter coli RM2228]
 gi|305432095|ref|ZP_07401262.1| tRNA modification GTPase TrmE [Campylobacter coli JV20]
 gi|57021001|gb|EAL57665.1| tRNA modification GTPase TrmE [Campylobacter coli RM2228]
 gi|304445179|gb|EFM37825.1| tRNA modification GTPase TrmE [Campylobacter coli JV20]
          Length = 442

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 140/447 (31%), Positives = 228/447 (51%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISIIRLSG    ++   + KK +  PR A+    F      LD+ 
Sbjct: 2   NDTIVAIATAHGVGSISIIRLSGERALEIALKLSKKNELCPRYATFTKLFNQKNEFLDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGED  EF VHGG +V   +LEEL  +   RLA PGEFS+RA   GK+ 
Sbjct: 62  IVIYFKAPFSFTGEDIVEFQVHGGFSVSEILLEELISL-GARLAEPGEFSKRACLRGKMS 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L+A ++ DLI +++    ++    M G L  L  +    L    +F+E  +D+++++  
Sbjct: 121 PLKALNIQDLILAKSANAAKIIARNMQGSLGELLDKIRTDLVKTLAFVETSIDYADDDLP 180

Query: 185 QNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +   +  +   +  +I + +S+ K G  +  G+KI I+G  N GKSSL NAL   
Sbjct: 181 SDLLEQISTMCEENSKILKEIYT-LSESKKG--LIEGFKIAIVGKPNVGKSSLLNALLSY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             AIV+DI GTTRD +     L  +L++I DTAGIRE+ D +E+ GI+ +   +E+AD+I
Sbjct: 238 KRAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDEIEQIGIELSKKSIEDADII 297

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG-LEE 353
           L + + + KK+             +    ++  KSDL + + +  D      + +  ++ 
Sbjct: 298 LAIFDNSRKKDEEDENIFKLLSQSDKKIFYLLNKSDLKTQFDKPCDIDFIELSVQNDIQI 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  K++  L+         + S    +     +   +  A     +  L++ A  L LA 
Sbjct: 358 LKEKLEKYLN--SLDSDGFLVSSIALINACKISSEAILRAKELLSENSLELFAFELNLAI 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L K T   D  ++LD +F  FC+GK
Sbjct: 416 GELAKFTKDFDRNEILDEMFGNFCLGK 442


>gi|307297010|ref|ZP_07576826.1| tRNA modification GTPase TrmE [Sphingobium chlorophenolicum L-1]
 gi|306877536|gb|EFN08764.1| tRNA modification GTPase TrmE [Sphingobium chlorophenolicum L-1]
          Length = 426

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 156/437 (35%), Positives = 230/437 (52%), Gaps = 15/437 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDKG 64
           ++IFA+S+GA P+ I +IR+SGPS       +     P PR A L       DG +LD+ 
Sbjct: 3   DSIFALSSGAPPAGIGVIRISGPSAGPALIALAG-ALPPPRHARLSSLTDPRDGALLDRA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P + TGED AE H HGG AV+  I E L+ +P LR A  GEF+RRAF NG++D
Sbjct: 62  LILWFPGPSTVTGEDLAELHCHGGRAVIAAIEEALSTLPGLRRAEAGEFTRRAFANGRMD 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L   E L+DL+++ET+ QRR ++    G  S     W   L  + +  EA LDFS+E+DV
Sbjct: 122 LNAVEGLSDLLAAETQQQRRAALLMAEGHFSRRVEDWRRTLLDLSAMTEAALDFSDEDDV 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +   +  +   +    D    I      E +R+G ++V+ G  NAGKS+L N L  ++ 
Sbjct: 182 PDEGIEARIGQGIQTLADDVEAILAAPSAERLRDGVRVVLAGPPNAGKSTLLNRLVGREA 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIV+DI GTTRD + +   L G      DTAG+R ET D +E  G++R    ++ AD+IL
Sbjct: 242 AIVSDIAGTTRDRIEVPAALGGAAFLFMDTAGLRDETSDAIEAIGMERARGALDAADIIL 301

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
            L   +           D I +  + D            +S+ TGEG+ EL+       +
Sbjct: 302 WLGPADEAPRA------DAILLAPQCD--RRTDSRPGLRLSAITGEGMPELVAL-LLDRA 352

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            +          H+R     S    +L  A++++    L I+AE LR A  ++ ++TG  
Sbjct: 353 ARLLPGEGDYALHRRQRDAASLLHTHLASAAVSD---DLLIVAELLRQARNAIDQLTGRA 409

Query: 424 DVEQLLDIIFSKFCIGK 440
             E +LD +FS FCIGK
Sbjct: 410 STEDMLDHLFSGFCIGK 426


>gi|255321603|ref|ZP_05362761.1| tRNA modification GTPase TrmE [Campylobacter showae RM3277]
 gi|255301459|gb|EET80718.1| tRNA modification GTPase TrmE [Campylobacter showae RM3277]
          Length = 439

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 131/444 (29%), Positives = 225/444 (50%), Gaps = 14/444 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            ETI AV+T     +ISIIRLSG     +   + K     PR A+L   +  +G ++D+ 
Sbjct: 2   NETIAAVATAHGVGSISIIRLSGSGALGLALKLTKITSLIPRYATLTKIYA-EGELIDEA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LLI F +P SFTGED  EF +HGG+ V N IL EL K    RLA  GEFS+RA  NGK+D
Sbjct: 61  LLIYFKAPHSFTGEDVVEFQLHGGLVVANLILGELIK-NGARLARAGEFSKRALINGKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
             + E++  LI++++E   ++    M G+L+    +   +L    +F+E  +D+++ +D+
Sbjct: 120 FSKIEAINSLINAKSEDSVKIIARTMRGDLAKFANEIRSELVKTLAFVETSIDYAD-DDL 178

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                + +   +      +   ++  +  + +  G+KI I+G  N GKSS+ N+L   + 
Sbjct: 179 PADLLESISQMLKQNSAKLDKIVAISQSRKGLLEGFKIAIVGKPNVGKSSILNSLLSYER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI++D  GTTRD +   L +  +LV+I DTAGIR+    +E+ GI  +   ++ AD+IL 
Sbjct: 239 AIISDEAGTTRDSIEEALKIGTHLVRIIDTAGIRKNAGKIEQIGISYSLRAIKEADVILA 298

Query: 305 LKEINSKK--------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + + + +         E+         ++  K DL   +    + +      +G +E+I+
Sbjct: 299 IFDASQEADEQDNEILELLKRSQKKIFYVLNKCDLGVKFISPENPIKICAK-QGTDEIIS 357

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
            +K+ L    ++    + +  R +         ++ A        L++ A  L  A   +
Sbjct: 358 NLKTYL--DAQETSEILLNSTRQISSCEAASEAIKRALNLLAGSELELFAYELNTAIEQI 415

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
             IT   +  ++LD +FS FC+GK
Sbjct: 416 SSITKPFERSEILDEMFSNFCLGK 439


>gi|150863681|ref|XP_001382235.2| hypothetical protein PICST_56161 [Scheffersomyces stipitis CBS
           6054]
 gi|149384937|gb|ABN64206.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 478

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 160/478 (33%), Positives = 247/478 (51%), Gaps = 42/478 (8%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILD 62
           + TI+A+ST    +AI +IR+SGP    V   +   K +P  R AS+R  +    G +LD
Sbjct: 1   QPTIYALSTKLGRAAIGVIRVSGPESKYVFNKLTNTKTQPKHRVASVRKLYSPKSGILLD 60

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP------NLRLANPGEFSRR 116
           + L + F SP ++TGED  E H+HGG A++  +L  + ++       N+R A  GEFS R
Sbjct: 61  EALTLFFNSPNTYTGEDLLELHLHGGTAIIKSVLAAIKELHDPKKGINIRYAENGEFSSR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+ DL E E + D+I +ETE QR  S+  ++G    L+ QW   + +  + +   +
Sbjct: 121 AFVNGRFDLTEIEGIRDMIDAETETQRIASLSSLTGNTKELFSQWRVGILNNIALMTTLI 180

Query: 177 DFSEEEDVQNFS--SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           DF E+ D++  +     V  +I  L+ +I  ++ + +  E +  G ++V+LG  NAGKSS
Sbjct: 181 DFGEDHDLEETAQLFDNVEENIKKLEQEIHKYLQKVRSSETLLRGIRMVLLGPPNAGKSS 240

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRT 292
           L N LA +D AIV+DI GTTRD++ + LD+ GY V I DTAGIR+T+  D +E EG+KR 
Sbjct: 241 LLNLLANEDAAIVSDIAGTTRDIIDVPLDINGYKVVIGDTAGIRDTESADKIEIEGMKRA 300

Query: 293 FLEVENADLILLL--KEINSKKEI---------SFPKNIDFIFIGTKSDLYSTYTE---- 337
             +  N DLIL +   E ++K ++             N   + +  K DL     E    
Sbjct: 301 IAKSYNCDLILAVLPFETDNKSDLHQLISHLSSLRELNRPVLVVLNKEDLIKNLGEKQEL 360

Query: 338 ------------EYDHLISSFTGEGLEELINKIKSILSN-KFKKLPFSIPSHKRHLYHLS 384
                       EY H++S  TG G+  L + +          +    I    R    L 
Sbjct: 361 LKYFSEKLQISPEYFHVVSCLTGGGINSLKSALSHTFRAITSSETTDPIIISSRAQDLLE 420

Query: 385 QTVRY-LEMASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
             V    E     +    + +  E+L+ +   +GKITG  + VE++L ++FS FCIGK
Sbjct: 421 NDVLQGFEDFCSWKARDDVVLATESLKQSVEGIGKITGDAIGVEEILGVVFSSFCIGK 478


>gi|291165946|gb|EFE27993.1| tRNA modification GTPase TrmE [Filifactor alocis ATCC 35896]
          Length = 457

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 134/471 (28%), Positives = 224/471 (47%), Gaps = 52/471 (11%)

Query: 5   KETIFAVSTG-------------ALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKA 48
            +TI A++T                               ++ + + +    K+P     
Sbjct: 4   DDTIAAIATATGEGGIGIIRISGM-------------HSLEIAKKVFRSISNKQPEEYPR 50

Query: 49  SLRYFFGL-DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107
           +L Y   + D  +LD+ L +  P+P ++T ED  E   HGG+     ILE + +    R+
Sbjct: 51  TLCYGHIVKDNTVLDEVLTVYMPAPHTYTKEDIVEIQCHGGMIATKMILEWVLE-NGARM 109

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A  GEF++RAF NG+IDL +AE++ D+IS++T     ++   + G +S+      +K+T 
Sbjct: 110 AEHGEFTKRAFLNGRIDLSQAEAIKDIISAQTAKSFLVAQNQLQGSISNKIKSIRNKVTE 169

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
             + I   +DF E ED    + +E+   +L  + ++   +   + G +++ G K  I+G 
Sbjct: 170 DVAKITVAVDFPE-EDTPEVTYEELKESMLLCQTEMKQLLETFETGRLLKEGLKTAIIGK 228

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKSSL N + ++  AIVTDI GTTRDV+   + ++G  ++I DTAGIR+T+DIVE+ 
Sbjct: 229 PNVGKSSLLNEILQEQRAIVTDIEGTTRDVIEEMITIDGVPLRIIDTAGIRDTEDIVEQI 288

Query: 288 GIKRTFLEVENA----------------DLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
           G+ R+   ++ A                D I+ L++   KK I      D   +   ++ 
Sbjct: 289 GVSRSKEIMQQADLVLVLLDLSRPLTEEDHII-LEQSKEKKRILLLNKTDLPSVWNPNE- 346

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
             +   E     S     G+E L  +IK +    +       + ++ RH   L   ++  
Sbjct: 347 EPSIAGEMVIQTSMSQKIGIETLKEQIKELVFQGQVIISNDGMLNNVRHKNSLIHAIKSS 406

Query: 391 EMASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E A    E+   LDI+  + +     LG+ITG    E+LLD IF  FCIGK
Sbjct: 407 EDALDSIEQALPLDILETDFKNCWTYLGEITGETVSEELLDTIFKNFCIGK 457


>gi|109946790|ref|YP_664018.1| tRNA modification GTPase TrmE [Helicobacter acinonychis str.
           Sheeba]
 gi|122973443|sp|Q17ZA7|MNME_HELAH RecName: Full=tRNA modification GTPase mnmE
 gi|109714011|emb|CAJ99019.1| thiophene and furan oxidizer [Helicobacter acinonychis str. Sheeba]
          Length = 450

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 137/453 (30%), Positives = 223/453 (49%), Gaps = 21/453 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI AV+T     AISI+++SG +   + + + KK+   PR A +   F  +  +LDK 
Sbjct: 2   NDTIAAVATPLGKGAISIVKISGNNALNILKQLTKKQDFTPRYAYVCDIFS-NNILLDKA 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++AF N K+D
Sbjct: 61  LAIYFKAPYSFTGEDVCEIQCHGSPLLTQNILQACLNL-GARLAQAGEFSKKAFLNHKMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E+   LI  E E         + GEL     +  + L  + +  E  +D+SEE+  
Sbjct: 120 LSEIEASIRLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIP 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +F ++  L+    +       +    + +    G+ + I+G  NAGKSSL NA+  ++ 
Sbjct: 180 SDFLNEVSLSLEKQI-ASFKDLLDFSNMQKQKNKGHALSIIGKPNAGKSSLLNAMLLEER 238

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +EN D+IL 
Sbjct: 239 ALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESVDKIERLGIEKSLKSLENCDIILS 298

Query: 305 LKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +++   E                 I +  K+DL      E            LE    
Sbjct: 299 VFDLSKPLEKEDFNIIDALNRTKKPCIVVLNKNDLSPKLELEVLKSHLQIPYSMLETNTL 358

Query: 357 KIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GLDIIAE 407
             K+ L +  +K+    P     +K  L  L+Q    LE A    ++       L++ + 
Sbjct: 359 NSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQ-KNALENAITELQNAKNHLETLELFSY 417

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 418 HILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450


>gi|148926123|ref|ZP_01809809.1| putative thiophene and furan oxidation protein [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|145845602|gb|EDK22694.1| putative thiophene and furan oxidation protein [Campylobacter
           jejuni subsp. jejuni CG8486]
          Length = 442

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 134/447 (29%), Positives = 229/447 (51%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ 
Sbjct: 2   SDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+ 
Sbjct: 62  IMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMT 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D+++++  
Sbjct: 121 PLKALNIQDLILSKSALAAKIIARNMQGNLGKLLEKIRTDLVKTLAFVETSIDYADDDLP 180

Query: 185 QNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +   +  +   +  +I + +SQ K G  +  G+KI I+G  N GKSSL NAL   
Sbjct: 181 SDLLEQISTMCEENSKILKEIYT-LSQSKKG--LIEGFKIAIVGKPNVGKSSLLNALLSY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D++E+ G+  +   +E+AD+I
Sbjct: 238 ERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSLEDADII 297

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG-LEE 353
           L + + +  ++    K        +    +I  KSDL + +    +      + +  +  
Sbjct: 298 LAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSAQKDITL 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  ++++  ++        + S    +     +   +  A    ++  L++ A  L LA 
Sbjct: 358 LKEELQNYFNSF--DSEGIMVSSLDLINACKISSEAIFRAKGLLEESSLELFAFELNLAI 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + T     +++LD +F  FC+GK
Sbjct: 416 NELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|330721877|gb|EGG99837.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma
           proteobacterium IMCC2047]
          Length = 399

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 141/403 (34%), Positives = 222/403 (55%), Gaps = 26/403 (6%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+G+ ++F +P SFTGE   E   HGG  V++ +L+E+ K+   R A PGEFS RAF 
Sbjct: 1   MIDQGVALLFTAPASFTGEHVLELQGHGGQVVMDLLLKEIIKL-GARQARPGEFSERAFL 59

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N KIDL +AE++ADLI S +E   R +++ + GE S      ++ L  +R ++EA +DF 
Sbjct: 60  NNKIDLTQAEAIADLIDSSSEQAARNAVKSLQGEFSKRIHDLVEALIMLRMYVEAAIDFP 119

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E E++   +  +V +D+  +   +   + +   G  ++ G  +V+ G  NAGKSSL N L
Sbjct: 120 E-EEIDFLADSKVGSDLNEVIQRLGRVLVEAHQGAALQEGMNVVMAGLPNAGKSSLLNRL 178

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           + KD AIV +IPGTTRDVL   + ++G  + I D AG+R++ D +E+EGI+R + E++ A
Sbjct: 179 SGKDSAIVINIPGTTRDVLREHIHIDGMPLHIIDPAGLRDSPDEIEQEGIRRAWSEIKKA 238

Query: 300 DLILLLKEINSKKEISFPKNID------------FIFIGTKSDLY----STYTEEYDHLI 343
           D ILL+ + ++ KE + P +I                I  K DL     +    E D   
Sbjct: 239 DRILLVVDASNVKE-THPHDIWPDFVDHLEGLSNITVIQNKCDLLNVEPAFINAEGDQSC 297

Query: 344 -----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                S+  GEG++ L N +K  +  +      +  + +RHL  L +   +LE      +
Sbjct: 298 PVIRLSAKQGEGIDLLTNHLKDCMGYQAGS-EGNFSARRRHLDALERAQTFLETGQRQLQ 356

Query: 399 DC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                +++AE+LR A   L +ITG    + LL  IFS FCIGK
Sbjct: 357 AAQAGELLAEDLRQAQQCLSEITGEFSSDDLLGRIFSSFCIGK 399


>gi|289450403|ref|YP_003475559.1| tRNA modification GTPase TrmE [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184950|gb|ADC91375.1| tRNA modification GTPase TrmE [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 484

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 142/484 (29%), Positives = 246/484 (50%), Gaps = 50/484 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-----KKKKPFPRKASLRYFFGLDG- 58
            +T  A +T A  + ++++RLSG +  Q+ + +        K      +SL     + G 
Sbjct: 3   NDTCVAYATPAGQAGLAVLRLSGGTAAQIADHVFYPGSWPAKNDRSAFSSLTTVRRMRGY 62

Query: 59  -------------RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL 105
                        + +D+ +L  F +P S+TGED  E  +HGG AV N +L+ + K    
Sbjct: 63  TCRFGHVFDPEELKPIDEAVLTRFVAPRSYTGEDVVEISIHGGQAVRNALLQAVVKA-GA 121

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           RLA PGEF+RRAF NGK+DL +AE++ DLI++E + +   ++  + G+LSS   +  + L
Sbjct: 122 RLAEPGEFTRRAFLNGKLDLAQAEAVMDLINAEADSRAEAALGQLQGKLSSYIHEIREPL 181

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
               + +E  + + E E+    S + +  DI      + + ++    G +IR+G  +++ 
Sbjct: 182 LSTMAKLELAIQYPEHEE-SVISPESLRKDIETATEKLIALVATYHDGRVIRDGLCVLLA 240

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  N+GKS+L N L+  D AIVTDIPGTTRD +   ++L G+ + + DTAG+R T D VE
Sbjct: 241 GRPNSGKSTLLNTLSGYDRAIVTDIPGTTRDTIEERINLSGHAITVIDTAGLRATTDTVE 300

Query: 286 KEGIKRTFLEVENADLILLLKEINSK---KEISFPKNI----DFIFIGTKSDL------- 331
           + G+ R+   ++ ADLIL L   +SK   ++++  KN       + + +K+DL       
Sbjct: 301 RLGVDRSLKAMQKADLILWLFPSDSKSLSEDLAELKNFSGNAPILPLISKADLLNPSDLP 360

Query: 332 -----------YSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFK--KLPFSIPSH 376
                      ++    E+     +S     G+E+LI +I  + SN  +       + + 
Sbjct: 361 RYLENLRIEATHAAIGLEFLPPIAVSGLDKSGIEQLIKQIIKLFSNGERILHSDGVLLTA 420

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436
           +RH   + +    +     N  +  LDII+  L+  + +L +ITG    +++   IF+ F
Sbjct: 421 ERHFLIVKKATELMCDLKRNLTELPLDIISLMLQNIAETLAEITGENVTDEVWREIFANF 480

Query: 437 CIGK 440
           C+GK
Sbjct: 481 CVGK 484


>gi|86150742|ref|ZP_01068958.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124454|ref|YP_004066458.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841912|gb|EAQ59158.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018176|gb|ADT66269.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 442

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 230/447 (51%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ 
Sbjct: 2   SDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+ 
Sbjct: 62  IMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMT 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D+++++  
Sbjct: 121 PLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLP 180

Query: 185 QNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +   +  +   +  +I + +SQ K G  +  G+KI I+G  N GKSSL NAL   
Sbjct: 181 SDLLEQISTMCEENSKILKEIYT-LSQSKKG--LIEGFKIAIVGKPNVGKSSLLNALLSY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D++E+ G+  +   +E+AD+I
Sbjct: 238 ERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSLEDADII 297

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG-LEE 353
           L + + +  ++    K        +    +I  KSDL + +    +      + +  +  
Sbjct: 298 LAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSAQKDITL 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  ++++ L++        + S    +     +   +  A    ++  L++ A  L LA 
Sbjct: 358 LKEELQNYLNSF--DSEGIMVSSLDLINACKISSEAIFRAKGLLEESSLELFAFELNLAI 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + T     +++LD +F  FC+GK
Sbjct: 416 NELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|307298711|ref|ZP_07578514.1| tRNA modification GTPase TrmE [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915876|gb|EFN46260.1| tRNA modification GTPase TrmE [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 439

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 142/443 (32%), Positives = 239/443 (53%), Gaps = 13/443 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
            + I A+ST    SA ++IR SG      +   +   K   PR A L  F   D R +D+
Sbjct: 3   NDPICALSTPRGLSATAVIRCSGKGIVSKISHLLPDLKTLKPRHAHLTSFMEGD-RYIDE 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            +++ F  P S+TGED  E   HG   ++   LE L ++   R+A PGEF++RA  NGK 
Sbjct: 62  VVVVFFQGPASYTGEDLVELSFHGNPLIIENALESLFRV-GFRMALPGEFTKRAVLNGKF 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE++  LI+S+TE     +++   G LS     + +K+  + + +E +L++ +E +
Sbjct: 121 DLVKAEAINALIASKTEKSLEAAIKSFRGSLSEEVASFREKMVRLLASVEVELNYPDEIE 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
               S  + L   + LK ++   I + + G +I  G K  I+G +N GKS+L NAL K+D
Sbjct: 181 TDYSSLYDEL---VSLKKEMCEFIEKSRNGVVISQGIKTAIVGETNVGKSTLLNALLKRD 237

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIV++IPGTTRD +  DL++ G L ++ DTAGIR+ ++ +E  GI+R+   +E A+L++
Sbjct: 238 RAIVSEIPGTTRDTIEEDLNIGGVLFRVIDTAGIRQAENEIEVLGIERSLKAIEEAELVI 297

Query: 304 LLKEINSKKEISFP-----KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           LL++ ++ +          K    I    KSD+       +D +IS+ TGEGL++L   +
Sbjct: 298 LLRDPHNPESKDLEEELRNKGKRLIVAANKSDIRKVEQHHFDVVISARTGEGLKDLEKLM 357

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLG 417
               + +   +   +    R    L   V Y+  +    E +  +D+++  +  A+ SL 
Sbjct: 358 LKR-TEEITSIGDEVIISARQKQKLLDAVDYIARSIEAIEGNITVDVLSTMIEQAARSLD 416

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           ++ G    E +L+ IFS FC+GK
Sbjct: 417 ELLGTHITEDVLERIFSDFCVGK 439


>gi|205356679|ref|ZP_03223440.1| putative thiophene and furan oxidation protein [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|205345417|gb|EDZ32059.1| putative thiophene and furan oxidation protein [Campylobacter
           jejuni subsp. jejuni CG8421]
          Length = 442

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 134/447 (29%), Positives = 229/447 (51%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ 
Sbjct: 2   SDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+ 
Sbjct: 62  IMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMT 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D+++++  
Sbjct: 121 PLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLP 180

Query: 185 QNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +   +  +   +  +I + +SQ K G  +  G+KI I+G  N GKSSL NAL   
Sbjct: 181 SDLLEQISTMCEENSKILKEIYT-LSQSKKG--LIEGFKIAIVGKPNVGKSSLLNALLSY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D++E+ G+  +   +E+AD+I
Sbjct: 238 ERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSLEDADII 297

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG-LEE 353
           L + + +  ++    K        +    +I  KSDL + +    +      + +  +  
Sbjct: 298 LAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSAQKDITL 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  ++++  ++        + S    +     +   +  A    ++  L++ A  L LA 
Sbjct: 358 LKEELQNYFNSF--DSEGIMVSSLDLINACKISSEAIFRAKGLLEESSLELFAFELNLAI 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + T     +++LD +F  FC+GK
Sbjct: 416 NELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|295101869|emb|CBK99414.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii L2-6]
          Length = 455

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 130/456 (28%), Positives = 228/456 (50%), Gaps = 21/456 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG----- 58
           +  TI A++T      I+I+RLSGP  ++V   + +   P  + A  + +  + G     
Sbjct: 2   QHSTIAAIATAPGAGGIAIVRLSGPESYEVAAKVLRPANPAKKVADAKGYTAMFGAFVEG 61

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
               D+G+ + F +P S+TGED  E   HGG AV   ++E          A PGE++RRA
Sbjct: 62  EEAFDEGVALFFRAPHSYTGEDVVELSCHGGSAVARRLVEACIAAGAS-PAAPGEYTRRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+ L +AE++ D+IS++      L+   ++G L+       D LT +++ + A +D
Sbjct: 121 FLNGKLSLTQAEAVMDIISADGRQGAALANASLNGALARKTAAQKDALTALQAHLAAWVD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E EDV   S   +   +  ++ ++ + I     G ++R G    I+G  NAGKS+L N
Sbjct: 181 FPE-EDVPELSQSHLCEVLGGVEQELDALIRSYDAGAVLREGVDCAIVGKPNAGKSTLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            LA  D AIVT + GTTRDV+   + L    + + DTAG+R+T+D +E EGI+R++ +++
Sbjct: 240 LLAGFDRAIVTPVAGTTRDVVEQAVQLGDVRLNLFDTAGLRQTEDEIEAEGIRRSWKKLD 299

Query: 298 NADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLI------SS 345
            A LIL + + +   +++++   +       I +  K D  + +  E             
Sbjct: 300 EAGLILAVFDGSERPTREDLELAQRCAGRPAIALVNKEDKPTRFDAELIAPYFAMVLPVC 359

Query: 346 FTGEGLEELI-NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
              EG  ++I   +  +L         +  S +R L   ++    +  A    +  GLD 
Sbjct: 360 CQEEGARKVIAAAVARLLGTNQIDPHAASLSGQRQLSAATRAREAVAGALDAAQGLGLDA 419

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  +  A  +L ++TG    E +++ +F +FC+GK
Sbjct: 420 VSVCVDDALDALCELTGENASEAVINEVFERFCVGK 455


>gi|121612630|ref|YP_001000638.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005565|ref|ZP_02271323.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|166200472|sp|A1VZU7|MNME_CAMJJ RecName: Full=tRNA modification GTPase mnmE
 gi|87248887|gb|EAQ71850.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 442

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 231/447 (51%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ 
Sbjct: 2   SDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+ 
Sbjct: 62  IMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMT 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D+++++  
Sbjct: 121 PLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLP 180

Query: 185 QNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +   +  +   +  +I + +SQ K G  +  G+KI I+G  N GKSSL NAL   
Sbjct: 181 SDLLEQISTMCEENSKILKEIYT-LSQSKKG--LIEGFKIAIVGKPNVGKSSLLNALLSY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +  +  L  +L++I DTAGIRE+ D++E+ G+  +   +E+AD+I
Sbjct: 238 ERAIVSDIAGTTRDTIEENFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSLEDADII 297

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG-LEE 353
           L + + +  ++    K        +    +I  KSDL + +    +      + +  +  
Sbjct: 298 LAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSAQKDITL 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  ++++ L++        + S    +     +   +  A    ++  L++ A  L LA 
Sbjct: 358 LKEELQNYLNSF--DSEGIMVSSLDLINACKISSEAIFRAKGLLEESSLELFAFELNLAI 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + T     +++LD +F  FC+GK
Sbjct: 416 NELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|239908445|ref|YP_002955187.1| putative tRNA modification GTPase TrmE [Desulfovibrio magneticus
           RS-1]
 gi|239798312|dbj|BAH77301.1| putative tRNA modification GTPase TrmE [Desulfovibrio magneticus
           RS-1]
          Length = 463

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 137/460 (29%), Positives = 223/460 (48%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----PRKASLRYFFGLDGR 59
            +TI AV+T      + IIR+SGP+   + E + +  +P      P +     F    GR
Sbjct: 6   SDTIAAVATPPGRGGVGIIRVSGPAARDIAEKLFRSPRPDFSGLRPYRLHHGTFHAPGGR 65

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+G+    P P S+TG+D+AE   HG  AV+  +    A     R A  GEF++RAF 
Sbjct: 66  LLDEGMAAFMPGPGSYTGQDTAELFCHGSPAVLAAV-LGAAYALGARPAEAGEFTKRAFL 124

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++A+LI++   +Q  L++  ++G +     +    L  + + I   +DF 
Sbjct: 125 NGRLDLSQAEAVAELIAARGAVQADLALNRLTGGMGEAARELGQALADLLAGICLAVDFP 184

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E E+V+    +   + +      I + +  G+     R G  + + G  NAGKSSLFNAL
Sbjct: 185 E-EEVECLPREAFADGVAAAVARIDALLEAGQRAAPYRQGATVALFGKVNAGKSSLFNAL 243

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              D AIVT +PGTTRD L   LDL+G  V+++DTAG+R TDD +E  G KR   +   A
Sbjct: 244 LGTDRAIVTALPGTTRDYLEESLDLDGLPVRLTDTAGLRATDDAIEDMGKKRGLEKARRA 303

Query: 300 DLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHL 342
            L L + + +        ++  ++       + + TK+DL                    
Sbjct: 304 TLGLYVVDGSTPFAPDPEAEAVLAELGPGKVLAVATKADLPPAEPAPLAALAGRGIRGVA 363

Query: 343 ISSFTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
           +SS TG GL  L+  I+++L+ +    +     PS +      +       +A       
Sbjct: 364 VSSRTGHGLTGLVAAIRAMLTAENGPPEPDTPAPSDREAAALSAARAELAALAEDIASGI 423

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             D++   L  A+  +  ITG    + +L+ +F +FCIGK
Sbjct: 424 PYDLMGVRLETAAGLVADITGETTPDDVLNAVFDRFCIGK 463


>gi|86150688|ref|ZP_01068909.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596778|ref|ZP_01100015.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562575|ref|YP_002344354.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|14195292|sp|Q9PNX9|MNME_CAMJE RecName: Full=tRNA modification GTPase mnmE
 gi|85838869|gb|EAQ56137.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88191619|gb|EAQ95591.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360281|emb|CAL35076.1| putative tRNA modification GTPase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|284926189|gb|ADC28541.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315927915|gb|EFV07238.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315928514|gb|EFV07818.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           305]
          Length = 442

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 230/447 (51%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ 
Sbjct: 2   SDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+ 
Sbjct: 62  IMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMT 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D+++++  
Sbjct: 121 PLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLP 180

Query: 185 QNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +   +  +   +  +I + +SQ K G  +  G+KI I+G  N GKSSL NAL   
Sbjct: 181 SDLLEQISTMCEENSKILKEIYT-LSQSKKG--LIEGFKIAIVGKPNVGKSSLLNALLSY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +  +  L  +L++I DTAGIRE+ D++E+ G+  +   +E+AD+I
Sbjct: 238 ERAIVSDIAGTTRDTIEENFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSLEDADII 297

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG-LEE 353
           L + + +  ++    K        +    +I  KSDL + +    +      + +  +  
Sbjct: 298 LAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSAQKDITL 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  ++++ L++        + S    +     +   +  A    ++  L+  A  L LA 
Sbjct: 358 LKEELQNYLNSF--DSEGIMVSSLDLINACKISSEAIFRAKGLLEESSLEFFAFELNLAI 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + T     +++LD +F  FC+GK
Sbjct: 416 NELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|313671977|ref|YP_004050088.1| tRNA modification gtpase trme [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312938733|gb|ADR17925.1| tRNA modification GTPase TrmE [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 437

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 140/441 (31%), Positives = 229/441 (51%), Gaps = 11/441 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI A  T  + SA+ ++R+SG    +V   +        R+     ++G    + D  +
Sbjct: 2   DTIVAPITPLINSAVIVVRISGDDALKVL-KLFDISNLEHRRVYNATYYG--SEVRDDVI 58

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L  F +P S+TGED  E   HG   +V+  + +  K+   R A PGEF++R F NGKIDL
Sbjct: 59  LTFFKAPNSYTGEDVLEVSFHGNPLIVSSFISDCYKL-GFRFAEPGEFTKRRFLNGKIDL 117

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AES+ DLI+S+++   + S   ++G L       I K+  I S IEA ++F E E++ 
Sbjct: 118 SQAESILDLINSKSKYSIQFSYNTLTGALKKRVDSIISKMVDIGSVIEAFIEFPE-EELD 176

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S   + ++I  + N++S+ IS     +  + G+ +VI G  N GKSSL N L  ++ +
Sbjct: 177 QSSFDNLYHEIELISNEVSTLISNYNTIQHYKTGFAVVIAGKPNVGKSSLLNFLLSQERS 236

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+DIPGTTRD +    +L G  +K+ DTAG+R + D +EK GI R+   +++ADL+++L
Sbjct: 237 IVSDIPGTTRDYILEYANLGGIPIKLIDTAGVRSSSDTIEKLGIDRSLEMIQHADLVIVL 296

Query: 306 KEINSKKE-----ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
            + +S  +     +   K+   +    K DL +    E+D   S      +++++ KI  
Sbjct: 297 LDASSFDDEDRYILDITKDKTRLIFVNKVDLVANLDIEHDLAFSLKYSIDVDKIVPKITE 356

Query: 361 ILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
            LS +       S+  + RHL      +  L           LDI A  L+ +   L +I
Sbjct: 357 KLSLSDSDSAYTSVLINDRHLTLFKDFLSCLNSLVNGLTSLDLDIAAFELQQSLNILYEI 416

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG    + +L+ IF +FCIGK
Sbjct: 417 TGERYTDSILNNIFERFCIGK 437


>gi|116329464|ref|YP_799184.1| tRNA modification GTPase TrmE [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116329932|ref|YP_799650.1| tRNA modification GTPase TrmE [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122282295|sp|Q04W28|MNME_LEPBJ RecName: Full=tRNA modification GTPase mnmE
 gi|122282756|sp|Q04XE4|MNME_LEPBL RecName: Full=tRNA modification GTPase mnmE
 gi|116122208|gb|ABJ80251.1| tRNA modification GTPase TrmE [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123621|gb|ABJ74892.1| tRNA modification GTPase TrmE [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 456

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 157/459 (34%), Positives = 240/459 (52%), Gaps = 27/459 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVC-------EFICKKKKPFPRKASLRYFFGLD 57
            +TI AVST + P AI IIR+SGP    +                  PR A    F   D
Sbjct: 2   NDTIAAVSTASGPGAIGIIRMSGPGALSISSSFLFSKNGFLSPSDIQPRIAIQCVFQIGD 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            R +D+ L   F +P S+TGED  EFH HG   ++   L+ + +    R A  GEFSRRA
Sbjct: 62  -RKIDQILFFYFKTPNSYTGEDLCEFHFHGNPILLREALDAIFRA-GARPAKQGEFSRRA 119

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+DL   E++  LIS+ +  +  L+ + + GE+S L      +L  +++  EA++D
Sbjct: 120 FLNGKLDLTGVEAIGRLISARSRFELELAQKNVFGEVSRLTSNLRSQLISLKAECEAEID 179

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FS  ED+   S +E    I  +K    + I++    E +    +IV+ G  N GKSSL N
Sbjct: 180 FS-TEDLTYESLEERKVRIEGVKTFCQTVIAKSNSAEKVIQQLRIVLYGEPNTGKSSLMN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L  KD +I+++IPGTTRD ++ ++ LEG  V++ DTAG+RET+D +E+ GI+R+  E +
Sbjct: 239 VLLGKDRSIISEIPGTTRDYISEEILLEGIPVRLVDTAGVRETEDHIERLGIERSEKEFQ 298

Query: 298 NADLILLLKEINSKKE----ISFPKNI--DFIFIGTKSD---------LYSTYTEEYDHL 342
           +AD+ L L +++ K+E    I+  K      I +  K D         L+S   +     
Sbjct: 299 SADIRLFLIDVSKKEEWKKFIAKAKGRLEGSILVANKIDIRDSSWNPNLFSDVKDLIICE 358

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDCG 401
           IS  T EG+  L+++I+         +   +   +R  YH    VR L+    L E+   
Sbjct: 359 ISCKTKEGIPILLDEIQKKA-ATMGHVEDYVLLEERQRYHFETIVRCLDKTLRLIEEGAP 417

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +I  + +  A   +G++ G VD E++L  IFSKFCIGK
Sbjct: 418 AEIYIQEMNYALSEIGEVNGRVDTEEVLGRIFSKFCIGK 456


>gi|307747860|gb|ADN91130.1| tRNA modification GTPase mnmE [Campylobacter jejuni subsp. jejuni
           M1]
          Length = 442

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 229/447 (51%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ 
Sbjct: 2   SDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+ 
Sbjct: 62  IMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMT 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D+++++  
Sbjct: 121 PLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLP 180

Query: 185 QNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +   +  +   +  +I + +SQ K G  +  G+KI I+G  N GKSSL NAL   
Sbjct: 181 SDLLEQISTMCEENSKILKEIYT-LSQSKKG--LLEGFKIAIVGKPNVGKSSLLNALLSY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D +E+ G+  +   +E+AD+I
Sbjct: 238 ERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDAIEQIGVALSKKSLEDADII 297

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG-LEE 353
           L + + +  ++    K        +    +I  KSDL + +    +      + +  +  
Sbjct: 298 LAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSAQKDITL 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  ++++ L++        + S    +     +   +  A    ++  L++ A  L LA 
Sbjct: 358 LKEELQNYLNSF--DSEGIMVSSLDLINACKISSEAIFRAKGLLEESSLELFAFELNLAI 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + T     +++LD +F  FC+GK
Sbjct: 416 NELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|13357574|ref|NP_077848.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|167971146|ref|ZP_02553423.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|168308181|ref|ZP_02690856.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|170762183|ref|YP_001752098.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|14195294|sp|Q9PRC7|MNME_UREPA RecName: Full=tRNA modification GTPase mnmE
 gi|189036215|sp|B1AI04|MNME_UREP2 RecName: Full=tRNA modification GTPase mnmE
 gi|11279575|pir||F82944 GTP-binding protein in thiophene and furan oxidation UU018
           [imported] - Ureaplasma urealyticum
 gi|6898963|gb|AAF30423.1|AE002101_6 GTP-binding protein in thiophene and furan oxidation [Ureaplasma
           parvum serovar 3 str. ATCC 700970]
 gi|168827760|gb|ACA33022.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902496|gb|EDT48785.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|186701160|gb|EDU19442.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 438

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 143/439 (32%), Positives = 228/439 (51%), Gaps = 8/439 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T  +  AI IIR+SGP  F++   I   K               D +ILD+ L+
Sbjct: 3   TIVALATAPMNCAIHIIRVSGPKAFEIINKISTIKIKKETFKIWYTILKDDNQILDEVLI 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
             F +P++FTGED  E + HGGI V N I++ L K    + A  GEFSRRA  N K+DL 
Sbjct: 63  NTFVAPKTFTGEDLVEINCHGGIVVANLIIKTLIK-YGCQPAQRGEFSRRALLNKKMDLS 121

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           + E++ +L++++ E+  +  +  + G +S    ++  +L  I   IE ++D+ E +DV+ 
Sbjct: 122 KIEAINNLVNAKNELSVKGVIGALLGRVSQSIAEFRHELFMIIGQIEVNIDYPEYDDVEQ 181

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             +  +   +L L   I+  I Q K    I  G +++I+G  N GKS+L NAL  +  AI
Sbjct: 182 VDAIILKQRLLSLDKKITKIIDQSKKFLPINKGIRVLIIGKPNVGKSTLLNALCNEQKAI 241

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTDIPGTTRDV+   ++++   + I DTAGI  T+D VE  GI +    ++  DLIL L 
Sbjct: 242 VTDIPGTTRDVIESSINIDNITLNILDTAGIHLTNDFVENLGINKAKALIDKVDLILYLI 301

Query: 307 EINSKKEIS---FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
             N ++++      K    + + TK DL   Y ++  +   +     ++ LI++IK +  
Sbjct: 302 PANEQQDLELYDLIKKQKHLLVYTKKDLVDQYDDKQIY--INAKNNDIQSLIDEIKKLFY 359

Query: 364 -NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITG 421
             +F      +   +R +  L      +  A LN EK   LD+I  +L   ++ L ++ G
Sbjct: 360 VQEFDNANIDVLQSQRQIGILENVHYLINNAILNLEKGDTLDLIVADLEFCNLRLNELLG 419

Query: 422 CVDVEQLLDIIFSKFCIGK 440
                  LD +F  FCIGK
Sbjct: 420 ISSEYDFLDDLFKNFCIGK 438


>gi|157415218|ref|YP_001482474.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           81116]
 gi|172047131|sp|A8FM10|MNME_CAMJ8 RecName: Full=tRNA modification GTPase mnmE
 gi|157386182|gb|ABV52497.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           81116]
 gi|315931242|gb|EFV10213.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           327]
          Length = 442

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 229/447 (51%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ 
Sbjct: 2   SDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+ 
Sbjct: 62  IMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMT 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D+++++  
Sbjct: 121 PLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLP 180

Query: 185 QNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +   +  +   +  +I + +SQ K G  +  G+KI I+G  N GKSSL NAL   
Sbjct: 181 SDLLEQISTMCEENSKILKEIYT-LSQSKKG--LIEGFKIAIVGKPNVGKSSLLNALLSY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D +E+ G+  +   +E+AD+I
Sbjct: 238 ERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDAIEQIGVALSKKSLEDADII 297

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG-LEE 353
           L + + +  ++    K        +    +I  KSDL + +    +      + +  +  
Sbjct: 298 LAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSAQKDITL 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  ++++ L++        + S    +     +   +  A    ++  L++ A  L LA 
Sbjct: 358 LKEELQNYLNSF--DSEGIMVSSLDLINACKISSEAIFRAKGLLEESSLELFAFELNLAI 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + T     +++LD +F  FC+GK
Sbjct: 416 NELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|217966557|ref|YP_002352063.1| tRNA modification GTPase TrmE [Dictyoglomus turgidum DSM 6724]
 gi|217335656|gb|ACK41449.1| tRNA modification GTPase TrmE [Dictyoglomus turgidum DSM 6724]
          Length = 455

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 147/459 (32%), Positives = 256/459 (55%), Gaps = 28/459 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFG---LDGR 59
           K+ I A++T    SAI +IRLSGP+   + + +   ++ K   + +S    +G       
Sbjct: 2   KDDIVAIATPLGFSAIGVIRLSGPNVINIVKRVFSPRRNKDLEKVSSHTLHYGNIIYKDE 61

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+ L+ ++ +P S+TGE+  E   HG   ++  IL+ L +    R+A  GEF++RAF 
Sbjct: 62  IIDEVLVAIYKAPNSYTGENMVEIFTHGSPIILEEILKILVE-EGARIAERGEFTKRAFL 120

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGKIDLL+AES+ ++I +E++   + ++  + GE+S    +   K+ H+R ++EA +DF 
Sbjct: 121 NGKIDLLQAESINEIIRAESKTALKRALSKLKGEVSKSLRELKSKVEHLRIYLEASMDFP 180

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+   +    ++ L  +  +K ++S  + + + G+ I+ GY+++++G  N GKSSLFNAL
Sbjct: 181 EDV--EEREREDWLRRLEEIKREVSYLLEKAERGDWIKGGYRVILVGRPNVGKSSLFNAL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            K+D AIVT IPGTTRD +  +L L  G+LVKI DTAG+    DI++K G+++T   +E 
Sbjct: 239 MKEDRAIVTPIPGTTRDYIEGELYLSSGHLVKIYDTAGLGIPKDILDKMGMEKTEKILEK 298

Query: 299 ADLILLLKEIN---SKKEISFPK------NIDFIFIGTKSDL-----YSTYTEEYDHLI- 343
           ++LIL + + +   S++EI+  +      N + I +  K DL      S ++E+ + +  
Sbjct: 299 SNLILFVVDGSGEISEEEINLFEKIRSYQNKEIILVINKVDLPQKVELSVFSEDIEKIFV 358

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-- 401
           S+  G G+E+L   I+       ++L   I  +  H   L +  ++ E       +    
Sbjct: 359 SAKEGIGIEDLEKAIER--HISSQELEDGIFLNVYHREKLKEIYQFCEEGISVLINLPQS 416

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LDI+ + L     + G+I G      + D IF+ FC+GK
Sbjct: 417 LDILGDILYDMEKAFGEILGEEVSLDIADKIFANFCVGK 455


>gi|262341101|ref|YP_003283956.1| tRNA modification GTPase TrmE [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272438|gb|ACY40346.1| tRNA modification GTPase TrmE [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 464

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 154/465 (33%), Positives = 243/465 (52%), Gaps = 31/465 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-------KASLRYFFGL 56
           + +TI A++T    SAIS+IRLSG +     E I    KP  +          L Y    
Sbjct: 3   DDDTIVALATPIGSSAISVIRLSGKTSISTVENIFLPIKPGKKLKNQSTHTIHLGYLIEE 62

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +  +LD+ L+ +F SP S+TGE+  E   HG   +   I  +L     +RLA PGEF+ R
Sbjct: 63  NKNLLDQVLISIFKSPFSYTGENMIEISCHGSYYIQQQI-LQLLIRKGIRLARPGEFTFR 121

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF N K+DL +AE++ADLISSE +    +S++ + G LS+L      KL    S +E +L
Sbjct: 122 AFLNKKVDLSQAEAVADLISSENKAYHEISLQQIKGRLSNLIKDLRIKLLDFASLLELEL 181

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DFSE E+V   +  E+ + +  LK  +   I    LG  I+ G  +VI+G  N GKS+ F
Sbjct: 182 DFSE-ENVIFANRSELFSFLQELKETLKDLIESFSLGNSIKKGVYVVIIGEPNVGKSTFF 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N + ++D +IV+ I GTTRD +   + L G L    DTAGIR+T D +E  G+++T  ++
Sbjct: 241 NQVIQEDRSIVSHIKGTTRDCIEGKIILNGILFHFYDTAGIRKTIDPIEVMGVEKTMKKM 300

Query: 297 ENADLILLLKEINSK---------KEISFPKN----IDFIFIGTKSDLYS-------TYT 336
           + + +IL + + +S          +EI   +      D   I  KSDL            
Sbjct: 301 DESQMILYIFDSSSSEKKKQKRIVREIQKIQKKYPLKDIFAIANKSDLSYFQDFYNIKSK 360

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SL 395
             Y   IS+     ++++++ + ++   +FK+    + +  RH   L  ++R + +A   
Sbjct: 361 VSYFFEISARNRHEVKKVLDTLSNLFFERFKEKKI-VVTQSRHYEALKLSLREVLLADEA 419

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +K    D+++  ++ A   LG+ITG V  E++L  IFSKFCIGK
Sbjct: 420 LKKGLSEDLVSIYIKEALRYLGEITGEVTSEEILKNIFSKFCIGK 464


>gi|312879308|ref|ZP_07739108.1| tRNA modification GTPase TrmE [Aminomonas paucivorans DSM 12260]
 gi|310782599|gb|EFQ22997.1| tRNA modification GTPase TrmE [Aminomonas paucivorans DSM 12260]
          Length = 472

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 134/454 (29%), Positives = 222/454 (48%), Gaps = 22/454 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR----KASLRYFFGLDGRIL 61
           + I A++T      I+++RLSG  C  + +   + + P  R    +    +    +G IL
Sbjct: 22  DVIAALATPWGEGGIAVLRLSGDGCTALLDRAFRGRVPLSRTEPWRMRHGHVIDPEGEIL 81

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L + F +P+S+TGE+S E H HGG       L+ L  +   RLA PGEF+RRAF NG
Sbjct: 82  DEVLAVRFAAPKSYTGEESGELHCHGGALPAQACLDLLLSL-GARLAQPGEFTRRAFANG 140

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++  +I S +      +   + G     +   + + T + + +EA LDF EE
Sbjct: 141 RLDLSQAEAVLSVIRSRSREALTAAGRALQGRTGEAFRDLLGRATDLAAHLEALLDFPEE 200

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E +      ++   +  LK        +   G ++R G ++ ++G  N GKSSL NAL +
Sbjct: 201 E-IPPLEEGDLRAGLRSLKGRTEDLRQRCLGGMLLREGIRVGLVGRPNVGKSSLLNALLQ 259

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +  AIVT +PGTTRD++       G  +++ DTAGIR + D +E  GI+R    +E ADL
Sbjct: 260 EARAIVTPLPGTTRDLVEAVTTHRGVPLRLVDTAGIRSSADPLEALGIQRARRTLEEADL 319

Query: 302 ILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHLISSF 346
            + + +         ++  +  +    +    K+DL    +E              +S+ 
Sbjct: 320 RVWVVDAGEPLTEEDRELAASLRGKTLLVARNKTDLPEAVSEAALKALVPGCAVCSVSAL 379

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
            G GLE L +++  +L      L  ++   +R +  L +T   L+ A+   +    D  A
Sbjct: 380 EGVGLEALKDRMVEVL-GGSGTLEGALSITRRQMEALDRTGEALQTAASALEASEWDAAA 438

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L  A  +L  +TG    E LLD +F +FCIGK
Sbjct: 439 ACLGEARSALAGLTGQDPGEDLLDRVFGEFCIGK 472


>gi|57237784|ref|YP_179032.1| tRNA modification GTPase TrmE [Campylobacter jejuni RM1221]
 gi|81353660|sp|Q5HUK3|MNME_CAMJR RecName: Full=tRNA modification GTPase mnmE
 gi|57166588|gb|AAW35367.1| tRNA modification GTPase TrmE [Campylobacter jejuni RM1221]
          Length = 442

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 231/447 (51%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ 
Sbjct: 2   SDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGED  EF +HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+ 
Sbjct: 62  IMIYFKAPYSFTGEDIVEFQIHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMT 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D+++++  
Sbjct: 121 PLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLP 180

Query: 185 QNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +   +  +   +  +I + +SQ K G  +  G+KI I+G  N GKSSL NAL   
Sbjct: 181 SDLLEQISTMCEENSKILKEIYT-LSQSKKG--LIEGFKIAIVGKPNVGKSSLLNALLSY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D++E+ G+  +   +E+AD+I
Sbjct: 238 ERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSLEDADII 297

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG-LEE 353
           L + + +  ++    K        +    +I  KSDL + +    +      + +  +  
Sbjct: 298 LAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSAQKDITL 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  ++++ L++        + S    +     +   +  A    ++  L++ A  L LA 
Sbjct: 358 LKEELQNYLNSF--DSEGIMVSSLDLINACKISSEAIFRAKGLLEESSLELFAFELNLAI 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + T     +++LD +F  FC+GK
Sbjct: 416 NELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|206895094|ref|YP_002246517.1| tRNA modification GTPase TrmE [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737711|gb|ACI16789.1| tRNA modification GTPase TrmE [Coprothermobacter proteolyticus DSM
           5265]
          Length = 431

 Score =  348 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 140/442 (31%), Positives = 221/442 (50%), Gaps = 19/442 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           E I A++T     A+ +IR+SG +     E    K    PR ASLRYF     ++ D+ +
Sbjct: 2   EPIVALATPWGVGALHVIRISGDASKNTVEAFLDKPLQKPRHASLRYF--SSEKVEDQVV 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
            I +  P S+TGE+  E   HG  A+   I+E L     ++ A PGEF+ RAF NGK+DL
Sbjct: 60  AIWYSEPHSYTGEEMVEIMCHGNPAIAELIIETLL-DAGMKPAQPGEFTFRAFLNGKMDL 118

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ DLI + +    +     + G+LS       +K+ ++ +F++A +DF E  DV+
Sbjct: 119 TQAEAVNDLILARSTELLKAGENTLKGKLSDRIASLRNKVLNVLAFLQAAMDFPE--DVE 176

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             S +E L     +  +    I   K  EI+R G  +VI G  N GKSSL NAL   + +
Sbjct: 177 ESSIEEQL---REILVETEDLIESAKTAEILRKGISLVIAGRPNVGKSSLMNALVGMERS 233

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+ IPGTTRD +     L    V + DTAG+R TDD +E+EG+K     +E ADL++ L
Sbjct: 234 IVSQIPGTTRDYIEQYTVLGKIPVNVVDTAGLRHTDDPIEQEGVKLALRRIEEADLVIFL 293

Query: 306 KEIN------SKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISSFTGEGLEELINKI 358
            + +       K+  +  +    I +G K D           + +S+    G++ +I  I
Sbjct: 294 YDASTGWTDEDKQMFNLIQEEKTIVVGNKIDKGKGNEQHPKAYFVSAKEKTGIDRIIEAI 353

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
             +++      P  +   +R +  L +T+  +  A L       ++ A++L  A  +L  
Sbjct: 354 HQLMN---ITEPPKLLVSQRQMGLLEKTLGDVHDA-LEHLSVYAEVAADDLFSALRNLTT 409

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           +      E LL  +FS FCIGK
Sbjct: 410 LIDGDVEEDLLSTVFSNFCIGK 431


>gi|168362384|ref|ZP_02695563.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|171903373|gb|EDT49662.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
          Length = 438

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 138/439 (31%), Positives = 226/439 (51%), Gaps = 8/439 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T  +  AI IIR+SGP  F++   I   K               + ++LD+ L+
Sbjct: 3   TIVALATAPMNCAIHIIRISGPQAFEMINKISTTKIKKETFKIWYTTLKDNDQVLDEVLV 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
             F  P++FTGED  E + HGG+ V N I++ L K    + A  GEFSRRA  N K+DL 
Sbjct: 63  NTFVGPKTFTGEDLVEINCHGGVIVANLIIKILIK-YGCQPAQRGEFSRRALLNKKMDLS 121

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           + E++ +L++++ E+  +  +  + G +S     +  +L  I   IE ++D+ E +DV+ 
Sbjct: 122 KIEAINNLVNAKNELSVKGVIGALLGRVSQSISDFKHELFMIIGQIEVNIDYPEYDDVEQ 181

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             +  +   +L L   I   I Q K    I  G K++I+G  N GKS+L NAL  +  AI
Sbjct: 182 VDAINLKQRLLVLNEKIKKIIDQSKKFLPINKGIKVLIIGKPNVGKSTLLNALCNEQKAI 241

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTDIPGTTRDV+   ++++   + I DTAGI  T+D VE  GI +    +   DL+L L 
Sbjct: 242 VTDIPGTTRDVIESSINIDNITLNILDTAGIHSTNDFVENLGINKAKELINKVDLVLYLV 301

Query: 307 EINSKKEIS---FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
             N+++++      K+   + + TK DL   Y +  D +  +     ++ LI+KIK +  
Sbjct: 302 PANNQQDLELYDLIKDQKHLLVYTKKDLIDQYND--DQIYINAKDNDIQALIDKIKELFY 359

Query: 364 -NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITG 421
             +F      +   +R +  L      ++ A  N EK   +D++  +L   ++ L ++ G
Sbjct: 360 VQEFDNANIDVLQSQRQIGILENVNYLIDNAITNLEKGDTVDLVVADLEFCNLRLNELLG 419

Query: 422 CVDVEQLLDIIFSKFCIGK 440
                  LD +F  FC+GK
Sbjct: 420 IGSEYDFLDDLFKNFCVGK 438


>gi|283956362|ref|ZP_06373842.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792082|gb|EFC30871.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 442

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 133/447 (29%), Positives = 229/447 (51%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ 
Sbjct: 2   SDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+ 
Sbjct: 62  IMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMT 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D+++++  
Sbjct: 121 PLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLP 180

Query: 185 QNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +   +  +   +  ++ + +SQ + G  +  G+KI I+G  N GKSSL NAL   
Sbjct: 181 SDLLEQISTMCEENSKILKEVYT-LSQSRKG--LIEGFKIAIVGKPNVGKSSLLNALLSY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D +E+ G+  +   +E+AD+I
Sbjct: 238 ERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDAIEQIGVALSKKSLEDADII 297

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG-LEE 353
           L + + +  ++    K        +    +I  KSDL + +    +      + +  +  
Sbjct: 298 LAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNIQNKNFIKLSAQKDITL 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  ++++ L++        + S    +     +   +  A    ++  L++ A  L LA 
Sbjct: 358 LKEELQNYLNSF--DSEGIMVSSLDLINACKISSEAIFRAKGLLEESSLELFAFELNLAI 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + T     +++LD +F  FC+GK
Sbjct: 416 NELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|149248662|ref|XP_001528718.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448672|gb|EDK43060.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 497

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 151/484 (31%), Positives = 245/484 (50%), Gaps = 45/484 (9%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGL--D 57
           +   + TIFA+ST    SAI+++R+SGP    +   + K +  P  R AS+R  +     
Sbjct: 15  IRSTQPTIFALSTPLAKSAIAVVRISGPQSSYIYNKLTKTETPPKNRIASVRKLYSPTVS 74

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPG 111
            ++LD+ L + F  P ++TG D  E H+HGGIA++  +LE ++ + +      +R A PG
Sbjct: 75  SKLLDESLTLFFAKPRTYTGLDLLELHLHGGIAIIKAVLEAISALHDPDNGVIIRQAEPG 134

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EFS++AF NGK DL   E ++++I++ETE+QR  S+  MSG+   ++ +W   L    + 
Sbjct: 135 EFSKQAFANGKYDLTALEGISEMINAETELQRLASLASMSGQTKDIFNKWRQDLLENVAN 194

Query: 172 IEADLDFSEEEDVQN--FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           +   +DF E+ D++        V   I  ++++I  ++ + K  E++  G  + ++G  N
Sbjct: 195 LTTLIDFGEDHDLEETALLFDSVSEKIKVMESEIGEYLHRTKSSEVLLKGINLTLVGPPN 254

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKE 287
           AGKSS+ N L+ ++ AIV++I GTTRDVL + L++ G+ V + DTAGIR     D +E+E
Sbjct: 255 AGKSSILNTLSNREAAIVSNIAGTTRDVLELPLEIGGFKVVLGDTAGIRLLSEADEIEQE 314

Query: 288 GIKRTFLEVENADLILLLKEINSKKEISFPKN---------IDFIFIGTKSDLYSTYTEE 338
           GI+R   + E AD ++++ +      +   KN            + +  K DLY      
Sbjct: 315 GIRRAMRKSEAADFVIMVLDPTQITGLDEMKNLLSTLHASGKQILIVLNKEDLYQDRVNT 374

Query: 339 YDHLI------------------SSFTGEGLEEL-INKIKSILSNKFKKLPFSIPSHKRH 379
                                  S  TG G+EEL +  IK             +    R 
Sbjct: 375 LRDWYLHKLGVAHSPQQISILPISCLTGAGIEELRLEMIKRFKVITETVSSDPVIISSRV 434

Query: 380 LYHLSQTVRY--LEMASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKF 436
              L   V Y   E     E D  + +  E LR +   +GKITG  + VE++L ++FS F
Sbjct: 435 QDILQNDVLYGFKEFFVWKEHD-DVVLATECLRQSIEGIGKITGEAIGVEEILGVVFSNF 493

Query: 437 CIGK 440
           CIGK
Sbjct: 494 CIGK 497


>gi|167972273|ref|ZP_02554550.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|167974296|ref|ZP_02556573.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|167988962|ref|ZP_02570633.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|195867400|ref|ZP_03079404.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273386|ref|ZP_03205922.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554346|ref|YP_002284431.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225550729|ref|ZP_03771678.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225551093|ref|ZP_03772039.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|184209425|gb|EDU06468.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188018680|gb|EDU56720.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188998243|gb|EDU67340.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195660876|gb|EDX54129.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198249906|gb|EDY74686.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209541847|gb|ACI60076.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225378908|gb|EEH01273.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225379883|gb|EEH02245.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 438

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 138/439 (31%), Positives = 227/439 (51%), Gaps = 8/439 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T  +  AI IIR+SGP  F++   I   K               + ++LD+ L+
Sbjct: 3   TIVALATAPMNCAIHIIRISGPQAFEMINKISTTKIKKETFKIWYTTLKDNDQVLDEVLV 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
             F  P++FTGED  E + HGG+ V N I++ L K    + A  GEFSRRA  N K+DL 
Sbjct: 63  NTFVGPKTFTGEDLVEINCHGGVIVANLIIKILIK-YGCQPAQRGEFSRRALLNKKMDLS 121

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           + E++ +L++++ E+  +  +  + G +S     +  +L  I   IE ++D+ E +DV+ 
Sbjct: 122 KIEAINNLVNAKNELSVKGVIGALLGRVSQSISDFKHELFMIIGQIEVNIDYPEYDDVEQ 181

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             +  +   +L L   I   I Q K    I  G K++I+G  N GKS+L NAL  +  AI
Sbjct: 182 VDAINLKQRLLVLNEKIKKIIDQSKKFLPINKGIKVLIIGKPNVGKSTLLNALCNEQKAI 241

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTDIPGTTRDV+   ++++   + I DTAGI  T+D VE  GI +    +   DL+L L 
Sbjct: 242 VTDIPGTTRDVIESSINIDNITLNILDTAGIHSTNDFVENLGINKAKELINKVDLVLYLV 301

Query: 307 EINSKKEIS---FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
             N+++++      K+   + + TK DL   Y++  D +  +     ++ LI+KIK +  
Sbjct: 302 PANNQQDLELYDLIKDQKHLLVYTKKDLIDQYSD--DQIYINAKDNDIQALIDKIKELFY 359

Query: 364 -NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITG 421
             +F      +   +R +  L      ++ A  N EK   +D++  +L   ++ L ++ G
Sbjct: 360 VQEFDNANIDVLQSQRQIGILENVNYLIDNAITNLEKGDTVDLVVADLEFCNLRLNELLG 419

Query: 422 CVDVEQLLDIIFSKFCIGK 440
                  LD +F  FC+GK
Sbjct: 420 IGSEYDFLDDLFKNFCVGK 438


>gi|325678533|ref|ZP_08158144.1| tRNA modification GTPase TrmE [Ruminococcus albus 8]
 gi|324109752|gb|EGC03957.1| tRNA modification GTPase TrmE [Ruminococcus albus 8]
          Length = 455

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 132/455 (29%), Positives = 213/455 (46%), Gaps = 23/455 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL---DGRIL 61
           TI A+ST      IS+IR+SG +   V E I            A     +G    +GR +
Sbjct: 3   TICAISTPVAEGGISVIRISGENALNVAEKIFAPHTCPSVAGMAGYTCAYGQINDNGRAV 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D G+L VF +P S+TGED  E   HGGI V   +L  L        A  GEF++RA  NG
Sbjct: 63  DDGVLTVFRAPHSYTGEDVCEISCHGGIYVTKRVL-RLCLENGAEPAQAGEFTKRAMLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+ L +AE++ D I+++ E     +     G L     +   +L  +   + A +D+ E 
Sbjct: 122 KLSLTQAEAVMDTIAAQGEYALASANLTRKGSLFGRIDKVTKELVKLLGELAAWVDYPE- 180

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+       +   +    +     ++    G +I+NG   VI G  N GKS+L N L  
Sbjct: 181 EDLPAVEENALRESLKNAVSVTGRLLADSDNGMLIKNGIDTVIAGRPNVGKSTLMNLLLG 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            D +IVT++ GTTRDV+     L   + ++SDTAGIR+T+D VEK G++     +E   L
Sbjct: 241 YDRSIVTEVAGTTRDVIEESARLGELIFRLSDTAGIRDTEDKVEKIGVEMAQKRLEECML 300

Query: 302 ILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEY-------DHLISSF 346
           ++ + + + K +                 + +  KSDL S   E++          IS+ 
Sbjct: 301 VIEVFDTSVKPDDDDTALLEKVRSLGKRALIVLNKSDLESAVGEDFFREYCENIVCISAK 360

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDII 405
                E++ + ++ I + +      +I +++R    L +  + L  A    E    LD +
Sbjct: 361 DPNDREKIQHALEKIFTPENYDADSTIFANERQRGCLVKANKNLTAALEALEMGETLDAV 420

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +  A+ SL ++TG    E ++  +FSKFC+GK
Sbjct: 421 TVMIDYAADSLLELTGEKATEAVVSEVFSKFCVGK 455


>gi|153803664|ref|ZP_01958250.1| probable tRNA modification GTPase TrmE [Vibrio cholerae MZO-3]
 gi|124120801|gb|EAY39544.1| probable tRNA modification GTPase TrmE [Vibrio cholerae MZO-3]
          Length = 325

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 123/324 (37%), Positives = 193/324 (59%), Gaps = 3/324 (0%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP    V + +  +    PR A    F   DG+ LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ ++  + ++  +R A PGEFS RAF N K+
Sbjct: 61  GIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKM 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + GE S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++++   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+  AD +L
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVL 299

Query: 304 LLKEINSKKEISFPKNIDFIFIGT 327
            + +  +  E + P++I   F+  
Sbjct: 300 FMVDGTTT-EATDPQDIWPDFVTN 322


>gi|328947106|ref|YP_004364443.1| tRNA modification GTPase mnmE [Treponema succinifaciens DSM 2489]
 gi|328447430|gb|AEB13146.1| tRNA modification GTPase mnmE [Treponema succinifaciens DSM 2489]
          Length = 462

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 144/465 (30%), Positives = 237/465 (50%), Gaps = 28/465 (6%)

Query: 1   MNH--EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--- 55
           MN    +E I A++T  +PSAI I+R SG +C ++   I  +KK   + A     +G   
Sbjct: 1   MNKYTPEEPIAAIATALVPSAIGIVRTSGKNCIELVSKIFSRKKALLQAAGNSLVYGWIE 60

Query: 56  -----LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANP 110
                   + +D+ +L V+ +P+SFTGED  E   HGG+ VV  I   L +    R A  
Sbjct: 61  DSRIQNGNKKIDEVMLGVYKAPKSFTGEDMVEIFCHGGVNVVTSIFSLLLE-NGFRKAER 119

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           GEF+ RA+ NGK+DL +AE++ ++I S T   R  +   +SG L          +     
Sbjct: 120 GEFTFRAYINGKVDLTKAEAVKEIIDSRTNASRSRAAGRLSGNLFEQISSIKKLILDTIG 179

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            IE ++++ E+E+  + S    L  +   +  +S   S  K  ++ ++G ++V+ G +NA
Sbjct: 180 NIEVEIEYPEDEENISESFDTSL--LKAAQKKLSDLASSWKAEKLYQDGARVVLCGKTNA 237

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSLFN+L K++ AIV+ I GTTRD L    D  G  V++ DTAG+R+T D++E+ G++
Sbjct: 238 GKSSLFNSLLKEERAIVSSIEGTTRDWLECWTDFAGIPVRLFDTAGLRKTSDLIEERGVE 297

Query: 291 RTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI- 343
                 ++AD+IL + +       +    I   KNI  + +  K D +    +    +  
Sbjct: 298 LAKDLSQDADVILYIVDSSKGILKDDLDFIESQKNIPVVLVLNKCDSFDLNLDGIKKVWK 357

Query: 344 -----SSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNE 397
                S+    G+E L+ K+K IL +  K     S     R    + + +  +  A    
Sbjct: 358 DSVKISAKNNIGIELLVFKVKDILFDGEKTEREQSGLGSARQKKSVQEALERVTHALEIS 417

Query: 398 KD--CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D   GLD + ++L  A   LG++ G V  + +L+ IFS+FC+GK
Sbjct: 418 QDFSYGLDAVVQDLEDALECLGEVAGEVSPDDVLENIFSRFCVGK 462


>gi|86152727|ref|ZP_01070932.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843612|gb|EAQ60822.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 442

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 229/447 (51%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISI+RLSG    +    +  K K  PR A+    F  +  I+D+ 
Sbjct: 2   SDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLIPRHATFTKLFNQNNEIIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+ 
Sbjct: 62  IMIYFKTPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMT 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D+++++  
Sbjct: 121 PLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLP 180

Query: 185 QNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +   +  +   +  +I + +SQ K G  +  G+KI I+G  N GKSSL NAL   
Sbjct: 181 SDLLEQISTMCEENSKILKEIYT-LSQSKKG--LIEGFKIAIVGKPNVGKSSLLNALLSY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D +E+ G+  +   +E+AD+I
Sbjct: 238 ERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDTIEQIGVALSKKSLEDADII 297

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG-LEE 353
           L + + +  ++    K        +    +I  KSDL + +    +      + +  +  
Sbjct: 298 LAVFDASRVQDKEDGKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSAQKDITL 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  ++++ L++        + S    +     +   +  A    ++  L++ A  L LA 
Sbjct: 358 LKEELQNYLNSF--DSEGIMVSSLDLINACKISSEAIFRAKGLLEESSLELFAFELNLAI 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + T     +++LD +F  FC+GK
Sbjct: 416 NELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|34483365|emb|CAE10363.1| PUTATIVE TRNA MODIFICATION GTPASE TRME [Wolinella succinogenes]
          Length = 432

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 132/434 (30%), Positives = 227/434 (52%), Gaps = 17/434 (3%)

Query: 21  SIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDS 80
           ++++LSG    ++   + ++    PR A+L   +  +  ++D+ +LI F +P S+T E+ 
Sbjct: 2   AVVKLSGSRALEIALKLSRRDHLQPRHATLANLWNREDEMMDEAILIYFKAPHSYTAEEV 61

Query: 81  AEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETE 140
            E   HGG  +   I++E   +   R+A  GEF+ RAF NG+IDL +AE++  LI ++++
Sbjct: 62  VEIQCHGGTLIARKIIQEALAL-GARVARAGEFTYRAFLNGRIDLSQAEAIGKLIEAKSD 120

Query: 141 MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
              ++ ++ + GEL          L  I ++ E  +D++E ED+ +     ++  I  + 
Sbjct: 121 ESYKVLLKQLKGELGRYVEGVRGSLVEILAYAEVSIDYAE-EDLPSDLEARMVEKIERIA 179

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            D+       K    +  GYK+ I+G  N GKSSL NAL   + AIV+DIPGTTRD +  
Sbjct: 180 EDLERIYQGSKRRSSLVEGYKLAIIGRPNVGKSSLLNALLLWERAIVSDIPGTTRDTIEE 239

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEI- 314
            L L  + V+I DTAGIRE  D +EK GI+RT L ++ +D++L L + +       ++I 
Sbjct: 240 SLHLGNHWVRIVDTAGIREAQDAIEKIGIERTLLALKESDMVLALFDSSQSLSPEDEQIK 299

Query: 315 ----SFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSFTGEGLEELINKIKSILSNKF 366
               +  +N   + +  KSDL         E Y H   S    G+EEL++ + S L  + 
Sbjct: 300 ELLRAHQENRRILVLFNKSDLSRELQDSELESYPHRYISAKEGGVEELLSLLASWLDEQG 359

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
                 + + +R L  +   +  L+ A     +  L++ A +++ A   L  IT   +  
Sbjct: 360 GGEEL-MLTSERQLLCVKSALGELKEARDRLIEGELELFAYHIQGALKELSLITRPYETS 418

Query: 427 QLLDIIFSKFCIGK 440
           +LLD++F +FC+GK
Sbjct: 419 ELLDVMFGQFCLGK 432


>gi|168282034|ref|ZP_02689701.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|182675871|gb|EDT87776.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
          Length = 438

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 143/439 (32%), Positives = 228/439 (51%), Gaps = 8/439 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T  +  AI IIR+SGP  F++   I   K               D +ILD+ L+
Sbjct: 3   TIVALATAPMNCAIHIIRVSGPKAFEIINKISTIKIKKETFKIWYTILKDDNQILDEVLI 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
             F +P++FTGED  E + HGGI V N I++ L K    + A  GEFSRRA  N K+DL 
Sbjct: 63  NTFVAPKTFTGEDLVEINCHGGIVVANLIIKTLIK-YGCQPAQRGEFSRRALLNKKMDLS 121

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           + E++ +L++++ E+  +  +  + G +S    ++  +L  I   IE ++D+ E +DV+ 
Sbjct: 122 KIEAINNLVNAKNELSVKGVIGALLGRVSQSIAEFKHELFMIIGQIEVNIDYPEYDDVEQ 181

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             +  +   +L L   I+  I Q K    I  G +++I+G  N GKS+L NAL  +  AI
Sbjct: 182 VDAIILKQRLLSLDKKITKIIDQSKKFLPINKGIRVLIIGKPNVGKSTLLNALCSEQKAI 241

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTDIPGTTRDV+   ++++   + I DTAGI  T+D VE  GI +    ++  DLIL L 
Sbjct: 242 VTDIPGTTRDVIESSINIDNITLNILDTAGIHLTNDFVENLGINKAKALIDKVDLILYLI 301

Query: 307 EINSKKEIS---FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
             N ++++      K    + + TK DL   Y ++  +   +     ++ LI++IK +  
Sbjct: 302 PANEQQDLELYDLIKKQKHLLVYTKKDLVDQYDDKQIY--INAKNNDIQSLIDEIKKLFY 359

Query: 364 -NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITG 421
             +F      +   +R +  L      +  A LN EK   LD+I  +L   ++ L ++ G
Sbjct: 360 VQEFDNANIDVLQSQRQIGILENVHYLINNAILNLEKGDTLDLIVADLEFCNLRLNELLG 419

Query: 422 CVDVEQLLDIIFSKFCIGK 440
                  LD +F  FCIGK
Sbjct: 420 ISSEYDFLDDLFKNFCIGK 438


>gi|163848366|ref|YP_001636410.1| tRNA modification GTPase TrmE [Chloroflexus aurantiacus J-10-fl]
 gi|222526288|ref|YP_002570759.1| tRNA modification GTPase TrmE [Chloroflexus sp. Y-400-fl]
 gi|205829131|sp|A9WKE3|MNME_CHLAA RecName: Full=tRNA modification GTPase mnmE
 gi|163669655|gb|ABY36021.1| tRNA modification GTPase TrmE [Chloroflexus aurantiacus J-10-fl]
 gi|222450167|gb|ACM54433.1| tRNA modification GTPase TrmE [Chloroflexus sp. Y-400-fl]
          Length = 452

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 147/456 (32%), Positives = 219/456 (48%), Gaps = 25/456 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFF--GLDGRIL 61
            +TI A++T      I IIRLSGP    +   I +  +P   R   +RY    G DG ++
Sbjct: 2   NDTIAAIATPPGEGGIGIIRLSGPDAQSIALRIFRPVRPGRLRSHRVRYGHVIGPDGEVI 61

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ LL +  +P SFT ED  E   HGG   V     E A     RLANPGEF+ RAF NG
Sbjct: 62  DEALLTLMAAPHSFTREDVVEISCHGGALPVQLT-LEAALAAGARLANPGEFTLRAFLNG 120

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE+  D+I ++T     ++   + G L+         +    ++I A +DF E 
Sbjct: 121 RIDLSQAEATLDVIRAQTSAGLAIAQAQLGGWLAREVRAARTAILEPLAYITALIDFPE- 179

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
              +    + V   I      +   ++    G ++RNG ++V++G  N GKSSL NAL +
Sbjct: 180 ---EGIEPQTVAGPIEQALATVERLLAGADQGMVLRNGARVVLVGRPNVGKSSLLNALLR 236

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            + AIVT IPGTTRD L    +L G  V + DTAG+R + D VE+ G++R    +  ADL
Sbjct: 237 VERAIVTPIPGTTRDTLEEMANLAGVPVVLIDTAGMRTSTDPVEQIGVERAAAALAGADL 296

Query: 302 ILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISSFT 347
            LL+ + +       +  +    +   I +  K D                     S+  
Sbjct: 297 ALLVFDSSQPFTPEDEAMLVATADRPTIIVWNKCDDPDVPPPPAPPHPKAMAVVACSARY 356

Query: 348 GEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDI 404
           G G++ L   I + L         +  + S+ RH   L +   +L  A          D+
Sbjct: 357 GHGIDTLAKTIATTLLGGTLPAVGATHLVSNPRHRAALRRAAEFLRAAQETLAAGAATDL 416

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A +L  A+ +LG+ITG    E LLD+IFS+FCIGK
Sbjct: 417 LAADLTGAANALGEITGETVGEDLLDMIFSRFCIGK 452


>gi|302780125|ref|XP_002971837.1| hypothetical protein SELMODRAFT_96586 [Selaginella moellendorffii]
 gi|300160136|gb|EFJ26754.1| hypothetical protein SELMODRAFT_96586 [Selaginella moellendorffii]
          Length = 469

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 135/471 (28%), Positives = 235/471 (49%), Gaps = 39/471 (8%)

Query: 6   ETIFAVSTGA-LP-SAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLD--- 57
           ETI A+ T       A++I+R+SGPS   V + I +   KKK  P+   + Y   ++   
Sbjct: 2   ETIAAIVTPLCGKQGAVAIVRMSGPSAVSVAQAIFRPLRKKKWIPQSHKVVYGTIIEYPK 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ +++   +P S+T ED  E   HGG   V  IL+ L      RLA PGEF+ RA
Sbjct: 62  ETIIDEVIIVPMLAPRSYTREDVVEIQCHGGDVCVRRILD-LCLQHGARLAQPGEFTLRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMS-----GELSSLYGQWIDKLTHIRSFI 172
           F NG+IDL +AE++A L+S++T      ++ G+      G LS+       +   + + I
Sbjct: 121 FLNGRIDLSQAENVAQLVSAKTASAAETALAGLQARKIFGGLSNFVRSMRSQCIELLAEI 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           +A +DF +  ++      +++  +  +   +   +     G ++++G ++ I+G  N GK
Sbjct: 181 DAHVDFED--ELAPLDVDKIMEAVGSVSAQVEQALETAARGRLLQSGIQVAIVGRPNVGK 238

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE-GIKR 291
           SSL N  ++ + AIVTD+ GTTRD++  D+ + G  V++ DTAGIR T+D VE   G++R
Sbjct: 239 SSLLNGWSQSERAIVTDVAGTTRDIVEADVVVSGVPVRLLDTAGIRITEDPVESIAGVQR 298

Query: 292 TFLEVENADLILLLKEI----NSKKEISF---PKNIDFIFIGTKSDLYS----TYTEEYD 340
           +      AD+++++        +  ++ F    +   +I +  K D       T  E+  
Sbjct: 299 SQAAATGADVLVMVINACDGWTTGDKLIFDHTLQQKPWILVMNKIDQVCGGDVTIPEDVR 358

Query: 341 HLISSF--TGEGLEEL-INKIKSILSNKFKKLPFSI-------PSHKRHLYHLSQTVRYL 390
              S+   T    E L I+K+ + L+                   ++R    L +  + L
Sbjct: 359 AAFSAVVSTCAVKEALDIDKLDTALAALIAAGGDVFSAGQQHWAVNERQKEQLIRAKQAL 418

Query: 391 EMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E       ++  +D+   +LR   ++LG+I+G    E++L  IFS+FCIGK
Sbjct: 419 ERLRQSAHEELPVDLWTVDLRDTILALGQISGDDVSEEVLANIFSRFCIGK 469


>gi|308802255|ref|XP_003078441.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri]
 gi|116056893|emb|CAL53182.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri]
          Length = 496

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 165/484 (34%), Positives = 245/484 (50%), Gaps = 50/484 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCE-------------FICKKKKPFPRKASLRY 52
           ETI+AV+T    + +S+ R+SGP+  +                    +      +   R 
Sbjct: 14  ETIYAVATARGRAGVSVTRVSGPNALEALRLARAMETSSPSSTASTSRANDVDGRLRYRA 73

Query: 53  FFGLDGR----ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLA 108
           F   + R     LD G +  + +P SFTGED  EFH HG +A    +L+ L  +   R A
Sbjct: 74  FVDPNARAGEPPLDVGFVATWRAPRSFTGEDVVEFHGHGSVATQRALLDALGTIDGFRHA 133

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSME-GMSGELSSLYGQWIDKLTH 167
             GEF+RRAF NGK+DL  AE LADL+ +ETE QRR +M    +G   ++Y +W D+L  
Sbjct: 134 EAGEFARRAFLNGKMDLTAAEGLADLLDAETEAQRRQAMRLTANGTQRAMYERWRDELMT 193

Query: 168 IRSFIEADLDFSEEEDVQ-NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
             +  EA +DF EEEDV  +   ++VL     L+  +  H+     GE+IR G ++ I+G
Sbjct: 194 CAAHCEAVIDFGEEEDVSGDVVERDVLTRATALRETLRKHLDAPARGEMIRRGVRVAIVG 253

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N GKSS+ NALA +D AIV+   GTTRDVL I L+L GY V +SDTAGIRETDD VEK
Sbjct: 254 APNVGKSSMLNALAGRDAAIVSPRAGTTRDVLEISLELNGYKVIVSDTAGIRETDDDVEK 313

Query: 287 EGIKRTFLEVENADLILLLKEINSKKEISFPK---------NIDFIFIGTKSDLYSTY-T 336
            G+ R      +AD+++ L + +S       +           D I +  KSD+      
Sbjct: 314 MGVARALERARDADVLVALADASSDASSDAARDALSTVDVTGKDVITVWNKSDVIDAARA 373

Query: 337 EEYDHLISSFT-------------GEGLEELINKIKSILSNKFKKL-------PFSIPSH 376
            E D  +   T             G G+++ I  +  +++ K ++             + 
Sbjct: 374 RELDARVDDITRRGGDARVVSARDGRGVDDFIATLARVVARKCERTSVEGDDDDALAVTR 433

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436
            RH  +L+  V      +       L++ AE+ RLA+ +L ++TG  DVE +LD++F  F
Sbjct: 434 SRHRVNLTSCVAA-LERAARRAPVPLELRAEDFRLAARALARVTGSYDVEDVLDVVFRDF 492

Query: 437 CIGK 440
           C+GK
Sbjct: 493 CVGK 496


>gi|261190881|ref|XP_002621849.1| mitochondrial GTPase [Ajellomyces dermatitidis SLH14081]
 gi|239590893|gb|EEQ73474.1| mitochondrial GTPase [Ajellomyces dermatitidis SLH14081]
          Length = 609

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 164/548 (29%), Positives = 256/548 (46%), Gaps = 116/548 (21%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLD-----GRI 60
           TI+A+ST    +AI+I+R+SGP+C Q+   +C K   P PR A+LR  F          I
Sbjct: 64  TIYALSTAPGRAAIAIVRISGPACVQIYNALCPKSPLPEPRVAALRTLFDPSVPLSVNSI 123

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-----------NLRLAN 109
           LD+ +++ FP+P++ TGED  E H+HGG AVV  +L  + +             ++R A 
Sbjct: 124 LDRAVVLHFPAPKTVTGEDVLELHIHGGPAVVKAVLNAIPRCAESASSDKFAPSSIRYAE 183

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G +  L+  Y +W  +L + R
Sbjct: 184 PGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAIRGTNDSLAVRYERWRQQLLYTR 243

Query: 170 SFIEADLDFSEEEDVQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
             +EA +DFSE++     + +    +  +   L   I+ HI     GE++RNG K+ +LG
Sbjct: 244 GEMEALIDFSEDQHFDESTEEFVSSITGETRNLVRQINMHIENASKGELLRNGIKVALLG 303

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD----- 281
             NAGKSSL N +  ++ AIV+   GTTRD++ + +DL GY  K  D AG+R        
Sbjct: 304 APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGYFCKFGDMAGLRSGHIAQAG 363

Query: 282 ----DIVEKEGIKRTFLEVENADLILLLKEINSKKE-------------------ISFPK 318
                 VE+EGI+R       +D+++++  +                        I+  K
Sbjct: 364 QMPIGAVEQEGIRRAKARALESDVVIVVLSLEEGDSGRGVKLVLEPEVIDAVQSCIALEK 423

Query: 319 NIDFIFIGTKSD-------------------------LYSTYTEEYDHLISSFTGEG--- 350
           ++       K D                         L     ++   LIS    E    
Sbjct: 424 HMIVAV--NKFDKYTPATNTDGTAQGLVNSLAGEITSLVPHIVQDQIFLISCREAENEQS 481

Query: 351 -----------LEELINKIKSI-----LSNKFKKL-----PFSIPSHKRHLYHLSQTVRY 389
                      L+ELI   K +     L N   K        S+    R   +L + V++
Sbjct: 482 ETADPGNIQTLLKELIRTFKRMSTPSELENGNDKFDKLYWEDSLGVTHRQSSNLQKCVQH 541

Query: 390 L------------EMASLNEKDCGLDII--AENLRLASVSLGKITGC---VDVEQLLDII 432
           L               +  + +  +DI+  AE+LR A+  L KITG     DVE +L ++
Sbjct: 542 LNDFLSQTCQTPDNAGNAEQIELNIDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVV 601

Query: 433 FSKFCIGK 440
           F KFC+GK
Sbjct: 602 FEKFCVGK 609


>gi|239613201|gb|EEQ90188.1| mitochondrial GTPase [Ajellomyces dermatitidis ER-3]
          Length = 608

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 160/548 (29%), Positives = 254/548 (46%), Gaps = 116/548 (21%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLD-----GRI 60
           TI+A+ST    +AI+I+R+SGP+C Q+   +C K   P PR A+LR  F          I
Sbjct: 63  TIYALSTAPGRAAIAIVRISGPACVQIYNALCPKSPLPEPRVAALRTLFDPSVPPSVNSI 122

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-----------NLRLAN 109
           LD+ +++ FP+P++ TGED  E H+HGG AVV  +L  + +             ++R A 
Sbjct: 123 LDRAVVLHFPAPKTVTGEDVLELHIHGGPAVVKAVLNAIPRCAESASSDKFAPSSIRYAE 182

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G +  L+  Y +W  +L + R
Sbjct: 183 PGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAIRGTNDSLAVRYERWRQQLLYTR 242

Query: 170 SFIEADLDFSEEEDVQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
             +EA +DFSE++     + +    +  +   L   I+ HI     GE++RNG K+ +LG
Sbjct: 243 GEMEALIDFSEDQHFDESTEEFVSSITGETRNLVRQINMHIENASKGELLRNGIKVALLG 302

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD----- 281
             NAGKSSL N +  ++ AIV+   GTTRD++ + +DL GY  K  D AG+R        
Sbjct: 303 APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGYFCKFGDMAGLRSGHIAQAG 362

Query: 282 ----DIVEKEGIKRTFLEVENADLILLLKEINSKKE-------------------ISFPK 318
                 VE+EGI+R       +D+++++  +                        I+  K
Sbjct: 363 QMPIGAVEQEGIRRAKARALESDVVIVVLSLEEGDSGRGVKLVLEPEVIDAVQSCIALEK 422

Query: 319 NIDFIFIGTKSD-------------------------LYSTYTEEYDHLISSFTGEGLEE 353
           ++       K D                         L     ++   LIS    E  + 
Sbjct: 423 HMIVAV--NKFDKYTPATNTDGTAQGLVNSLAGEITSLVPHIVQDQIFLISCREAENEQS 480

Query: 354 ------LINKIKSILSNKFKKL------------------PFSIPSHKRHLYHLSQTVRY 389
                  I  +   L   FK++                    S+    R   +L + V++
Sbjct: 481 ETADPGNIQTLLKELIRTFKRMSTPSELENGNDKFDKLYWEDSLGVTHRQSSNLQKCVQH 540

Query: 390 L------------EMASLNEKDCGLDII--AENLRLASVSLGKITGC---VDVEQLLDII 432
           L               +  + +  +DI+  AE+LR A+  L KITG     DVE +L ++
Sbjct: 541 LNDFLSQTCQTPDNAGNAEQIELNIDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVV 600

Query: 433 FSKFCIGK 440
           F KFC+GK
Sbjct: 601 FEKFCVGK 608


>gi|302781180|ref|XP_002972364.1| hypothetical protein SELMODRAFT_97275 [Selaginella moellendorffii]
 gi|300159831|gb|EFJ26450.1| hypothetical protein SELMODRAFT_97275 [Selaginella moellendorffii]
          Length = 469

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 135/471 (28%), Positives = 235/471 (49%), Gaps = 39/471 (8%)

Query: 6   ETIFAVSTGA-LP-SAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLD--- 57
           ETI A+ T       A++I+R+SGPS   V + I +   KKK  P+   + Y   ++   
Sbjct: 2   ETIAAIVTPLCGKQGAVAIVRMSGPSAVSVAQAIFRPLRKKKWIPQSHRVVYGTIIEYPK 61

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             I+D+ +++   +P S+T ED  E   HGG   V  IL+ L      RLA PGEF+ RA
Sbjct: 62  ETIIDEVIIVPMLAPRSYTREDVVEIQCHGGDVCVRRILD-LCLQHGARLAQPGEFTLRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMS-----GELSSLYGQWIDKLTHIRSFI 172
           F NG+IDL +AE++A L+S++T      ++ G+      G LS+       +   + + I
Sbjct: 121 FLNGRIDLSQAENVAQLVSAKTASAAETALAGLQARKIFGGLSNFVRSMRSQCIELLAEI 180

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           +A +DF +  ++      +++  +  +   +   +     G ++++G ++ I+G  N GK
Sbjct: 181 DAHVDFED--ELAPLDVDKIMEAVGSVSAQVEQALETAARGRLLQSGIQVAIVGRPNVGK 238

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE-GIKR 291
           SSL N  ++ + AIVTD+ GTTRD++  D+ + G  V++ DTAGIR T+D VE   G++R
Sbjct: 239 SSLLNGWSQSERAIVTDVAGTTRDIVEADVVVSGVPVRLLDTAGIRITEDPVESIAGVQR 298

Query: 292 TFLEVENADLILLLKEI----NSKKEISF---PKNIDFIFIGTKSDLYS----TYTEEYD 340
           +      AD+++++        +  ++ F    +   +I +  K D       T  E+  
Sbjct: 299 SQAAATGADVLVMVINACDGWTTGDKLIFDHTLQQQPWILVMNKIDQVCEGDVTIPEDVR 358

Query: 341 HLISSF--TGEGLEEL-INKIKSILSNKFKKLPFSI-------PSHKRHLYHLSQTVRYL 390
              S+   T    E L I+K+ + L+                   ++R    L +  + L
Sbjct: 359 AAFSAVVSTCAVKEALDIDKLDTALAALIAAGGDVFSAGQQHWAVNERQKEQLIRAKQAL 418

Query: 391 EMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E       ++  +D+   +LR   ++LG+I+G    E++L  IFS+FCIGK
Sbjct: 419 ERLRQSAHEELPVDLWTVDLRDTILALGQISGDDVSEEVLANIFSRFCIGK 469


>gi|291278439|ref|YP_003495274.1| tRNA modification GTPase TrmE [Deferribacter desulfuricans SSM1]
 gi|290753141|dbj|BAI79518.1| tRNA modification GTPase TrmE [Deferribacter desulfuricans SSM1]
          Length = 442

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 138/444 (31%), Positives = 237/444 (53%), Gaps = 12/444 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGLDGRILDK 63
           +TI A  T  + +++ +IR+SGP  F V +++    KK    +   + +   +   I D 
Sbjct: 2   DTIVAPITPLMRTSVIVIRVSGPRAFDVSKYLYVSGKKINDFKHKYVYHGEFIADDIKDD 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            +   F SP S+TGE+  E   HG   +V   L+ + K+  +RLA PGEF+++AF NGKI
Sbjct: 62  VIFYAFHSPNSYTGENVVEISFHGNPIIVQKALKNIYKL-GIRLAEPGEFTKQAFLNGKI 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL++AE++ +LI S++      S E +   +        + L  I S +EA +DF E ED
Sbjct: 121 DLIQAEAVYELIDSKSVTGIYSSYEKLRSGMRGEVDFIKENLLDILSVVEAYIDFPE-ED 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           + +F  K V   +  +   +   IS  +  + +  G KI I+G  N GKSSL N L +++
Sbjct: 180 LSDFELKYVYERLDNIIFKLEKLISTFETFKYVNEGVKIAIIGKPNVGKSSLMNYLLREN 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
             IV+DIPGTTRDV+  +++++GY VK+ DTAGIR ++D +E  GI+ +  ++  A+++L
Sbjct: 240 RVIVSDIPGTTRDVVEEEINIKGYNVKLIDTAGIRNSNDKIEVIGIEFSKNKLNEANIVL 299

Query: 304 LLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            L ++      +  + ++  K+ + I +  K D       + D  IS  TGEG+++L+N 
Sbjct: 300 FLFDLEKGVDEDDLQIMNLVKDKNIIKVANKLD-KKMVDIDCDVEISVKTGEGVDDLLNI 358

Query: 358 IKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
           ++  + +       +     +R      + + +++    N     LD++A +L      +
Sbjct: 359 LEKQIKSIVVVNEDNKQLLSERQRDAFLEILNHIQDIKKNFNVLTLDLLAVDLHFCLNKI 418

Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440
            ++TG +  E LL  IF KFCIGK
Sbjct: 419 SELTGEIYTEDLLKNIFDKFCIGK 442


>gi|71891804|ref|YP_277533.1| tRNA modification GTPase TrmE [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|123641227|sp|Q494C0|MNME_BLOPB RecName: Full=tRNA modification GTPase mnmE
 gi|71795910|gb|AAZ40661.1| GTPase for tRNA modification and thiophene and furan oxidation
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 470

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 159/472 (33%), Positives = 248/472 (52%), Gaps = 34/472 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN+  +T+ A+ST      I IIR+SG S  ++   +   K P PRKA    F   DG I
Sbjct: 1   MNYTIDTVVAISTPPGRGGIGIIRISGKSVPEIAPKLLG-KIPNPRKAEYLPFLDTDGSI 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-MPNLRLANPGEFSRRAFE 119
           L++ + + FP P SFTGE+  E H HGG  +++ +LE + K   ++R+A+PGEF++RAF 
Sbjct: 60  LERVIALFFPEPNSFTGENILEIHGHGGQIILDILLERILKTSSDIRIAHPGEFTKRAFL 119

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N KIDL++AE++AD+I + +    + +   + G  S      +++LT++R + E+ +DFS
Sbjct: 120 NNKIDLVQAEAIADIIDATSYQAAKSASNSLQGIFSRKIYIILEQLTNLRMYAESSIDFS 179

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+E +     +++   +  + +D+         G ++R G KIVI G  NAGKSSLFNAL
Sbjct: 180 EDE-ISIIPYEDIKKKLRNIISDVQKMYKSTYHGVLLREGIKIVIAGKPNAGKSSLFNAL 238

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDIVEKEGIKRTFLEVEN 298
              D AI++ I GTTRD L   + L G    I+DTAG+++  D+ +E+ G+KRT+ E+ N
Sbjct: 239 VGIDRAIISTISGTTRDTLHEYIQLNGIAFHITDTAGLQKKSDNEIEQIGMKRTWEELSN 298

Query: 299 ADLILLLKEINS----KKEISFP----------KNIDFIFIGTKSDL------YSTYTEE 338
           AD IL + + N     + +I+            K      I  KSDL       S     
Sbjct: 299 ADHILWVIDPNDVTNKENDITLKHVEKVLFCKNKKTPITIIHNKSDLTKNQIGISIINNY 358

Query: 339 YDHLISSFTGEGLEELIN--------KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
               +S+   +G + L          KI+    +   +   +  + +RHL  L ++ +YL
Sbjct: 359 TIITLSALFNDGTDLLQEYLSNNIKSKIQQDCKSNLSENQGNFIARRRHLNALEKSSKYL 418

Query: 391 EMASLNEKD-CGL-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             A         + ++ AE+L LA   L KI G    + LL  IFS FCIGK
Sbjct: 419 FSAQTQLLSTMSINELFAEDLGLAHKELSKIFGKFTPDDLLKRIFSTFCIGK 470


>gi|260576109|ref|ZP_05844102.1| small GTP-binding protein [Rhodobacter sp. SW2]
 gi|259021589|gb|EEW24892.1| small GTP-binding protein [Rhodobacter sp. SW2]
          Length = 428

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 158/437 (36%), Positives = 237/437 (54%), Gaps = 12/437 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+++    + ++++RLSGP  F   + +        R    R  +   G  LD+ L
Sbjct: 2   DTIYALASARGKAGVAVVRLSGPQAFAAVQALAGPLPDLRRVGLRRLVW--QGVELDQAL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +++F    SFTGE  AE H+HG  AVV+ +L  L++   LRLA PGEF+RRA ENG +DL
Sbjct: 60  VLLFGDGASFTGEAVAELHLHGSTAVVSAVLRALSEQNGLRLAMPGEFTRRALENGCLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI +ETE QRR ++  +SG +  +   W   L    + +EA +DF++ EDV 
Sbjct: 120 AQIEGLADLIDAETESQRRQALRVLSGAVGKIAQGWRHDLIRAAALLEATIDFAD-EDVP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              + EV   +  L   +   I   ++ E IR+G+++ ILG  N GKS+L N LA ++ A
Sbjct: 179 LDVTPEVCVLLDGLLAALRREIDGSRIAERIRDGFEVAILGAPNVGKSTLLNTLAGREAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++I GTTRDV+ + +DL G  V + DTAG+RET D VE  GI+R      +ADL + L
Sbjct: 239 ITSEIAGTTRDVIEVRMDLGGLPVTLLDTAGLRETLDQVEGIGIQRALARAADADLRVFL 298

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E         P   D I +G K+D+           +S  TGEG+ +L+ +I   L  +
Sbjct: 299 LEDGIDLPGIVP-GPDDILVGGKADIR----GGDGLRVSGKTGEGIADLVAEITRRLVQR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCV 423
                    + +RH   +   +R +E A          +++ AE L  A  ++  + G V
Sbjct: 354 SGLAGT--ITRERHRIAIEGAIRAMESARAEVGSALPRVELAAEALHQAIRAMDSLVGRV 411

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE LLD IF+ FCIGK
Sbjct: 412 DVENLLDEIFASFCIGK 428


>gi|213405481|ref|XP_002173512.1| tRNA modification GTPase mss1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001559|gb|EEB07219.1| tRNA modification GTPase mss1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 501

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 169/479 (35%), Positives = 253/479 (52%), Gaps = 44/479 (9%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL-RYFFGLDGRIL 61
             K T++A+ST    +A+++IR+SGP   +V + +C    P PR A+L R       R +
Sbjct: 26  QSKHTVYALSTAPGKAAVAVIRVSGPQASEVAKTLCGS-VPKPRMATLLRLLHPKTKRQI 84

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA--KMPNLRLANPGEFSRRAFE 119
           D+ L++ FP P SFTGED+ EFH HGG  VV   L  +A  ++P LR A  GEFS++AF 
Sbjct: 85  DRALVLFFPGPASFTGEDTIEFHTHGGSGVVQETLTAIAETRLPALRYAERGEFSKQAFY 144

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+DLL+ ESLAD+I +ET  Q  L+ E +  +      QW D +   R+ +E  LDFS
Sbjct: 145 NGKMDLLQLESLADVIDAETAEQVYLANEDIDTQTRKRVSQWRDTILECRALLETLLDFS 204

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EE  V+   S+ VL+    L ND+ S   + +  E  R G + V+ G +NAGKSSL N+L
Sbjct: 205 EEHSVEEDFSRAVLDKTRSLLNDMHSFQIRQRTREAFRFGTQAVLFGPTNAGKSSLVNSL 264

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE--TDDIVEKEGIKRTFLEVE 297
           A++ VA+V+D PGTTRD L + L++ GY V +SDTAG+R       VE  GI+      +
Sbjct: 265 ARRQVALVSDEPGTTRDALQVQLNIHGYPVWLSDTAGLRHHNVSSAVEAAGIQLAKQRTK 324

Query: 298 NADLILLLKEIN-----------SKKEISFPKNID-------FIFIGTKSDLYST----- 334
            + L+ L+  +N             K +    + D          I  K+DL        
Sbjct: 325 QSQLLFLVLPMNEYLHNSQAVTQEAKGLLRSLSCDENNSQRLLFVILNKADLLENDHQKQ 384

Query: 335 -----------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL--PFSIPSHKRHLY 381
                       + E   ++S  TG GL+  +N++ +IL +   +      + S  R+  
Sbjct: 385 QAQKAVCSEFGLSPERVAVLSCLTGNGLDSFLNQVSTILRSFTARNIQNNELASENRYRQ 444

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            L    ++L++      D    I+AE LRLAS SL  + G ++ E++L  +F +FCIGK
Sbjct: 445 CLKDCCQHLQIVLTPNLDVT--IMAEELRLASNSLEMMIGTMNNEEVLSQVFQRFCIGK 501


>gi|283954515|ref|ZP_06372034.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793919|gb|EFC32669.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni
           414]
          Length = 442

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 139/447 (31%), Positives = 230/447 (51%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A+ST     +ISI+RLSG    +    + +K K  PR A+    F  +  I+D+ 
Sbjct: 2   SDTIVAISTAHGVGSISIVRLSGERALEFALKLSRKTKLTPRYATFTKLFNQNNEIIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F SP SFTGED  EF  HGG +V   +LEEL  +   RLA  GEFS+RA  NGK+ 
Sbjct: 62  IMIYFKSPFSFTGEDIVEFQTHGGFSVSEILLEELVSL-GARLALAGEFSKRACLNGKMT 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D+++++  
Sbjct: 121 PLKALNIQDLILSKSVLAAKIIARNMQGNLGELLEKIRIDLVKTLAFVETSIDYADDDLP 180

Query: 185 QNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   +   +  +   +  +I + +SQ K G  +  G+KI I+G  N GKSSL NAL   
Sbjct: 181 SDLLEQISTMCEENSKILKEIYT-LSQSKKG--LIEGFKIAIIGKPNVGKSSLLNALLSY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D +E+ G+  +   +E+AD+I
Sbjct: 238 ERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDTIEQIGVALSKKSLEDADII 297

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG-LEE 353
           L + + + K++    K        +    +I  K+DL S +    +      + +  +  
Sbjct: 298 LAVFDASRKEDEEDKKIFKLLENIDKKIFWILNKTDLESIFENTQNKNFIKLSAQKDIAL 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  ++++ L++        + S    +     +   +  A    K+  L++ A    LA 
Sbjct: 358 LKQELQNYLNSF--DSEGIMVSSLDLINACKISSEAIFRAKGLLKENSLELFAFEFNLAI 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + T     +++LD IF  FC+GK
Sbjct: 416 NELARFTKDFQRDEILDEIFGNFCLGK 442


>gi|254567177|ref|XP_002490699.1| Mitochondrial protein, forms a heterodimer complex with Mto1p
           [Pichia pastoris GS115]
 gi|238030495|emb|CAY68419.1| Mitochondrial protein, forms a heterodimer complex with Mto1p
           [Pichia pastoris GS115]
 gi|328351084|emb|CCA37484.1| tRNA modification GTPase mnmE [Pichia pastoris CBS 7435]
          Length = 503

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 166/480 (34%), Positives = 249/480 (51%), Gaps = 48/480 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGL-DGRIL 61
           TI+A+ST    SAI++IR+SGPS   V + + +    K+    R AS+R  +    G +L
Sbjct: 26  TIYALSTKQGRSAIAVIRISGPSTLDVFKRLSRIDDDKRLQRHRLASVRKLYDPKSGVLL 85

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSRRA 117
           D+ L + F  P S+TGED  E HVHGG AVV  +L  +  +      +R A+PGEFSRR 
Sbjct: 86  DEALSLFFKGPNSYTGEDVLELHVHGGNAVVKCVLNAIKYLHESAAPIRYADPGEFSRRG 145

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F+NGK DL E E + D+I +ETE QR  ++  + GE   L+ +W  ++    + +   +D
Sbjct: 146 FQNGKFDLTEVEGVRDMIDAETEFQRVSALTSLKGETRHLFHRWRTEIVKNVALLTTVID 205

Query: 178 FSEEEDVQNFS--SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           F E+ D++  +     V  +I  L+ +I +++ + K  EI+  G K+ ++G  NAGKSSL
Sbjct: 206 FGEDHDIEEVNELFGRVAKNIDLLEAEIKNYLEKVKRSEILMKGIKLSLIGPPNAGKSSL 265

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKRTF 293
            N L+  D  IV+DIPGTTRD + I LD+ GY V I DTAGIR  E  DI+EKEGIKR  
Sbjct: 266 LNVLSDSDSVIVSDIPGTTRDSIDIPLDVGGYKVVIGDTAGIRSFEDADIIEKEGIKRAT 325

Query: 294 LEVENADLILLLKEINSKKE----ISFPKN---------IDFIFIGTKSDLYS------- 333
            +  N+D+ +++  ++ ++     I   +N          + +    KSDL         
Sbjct: 326 TKSLNSDVAVIILPVDLREINSDLIKHIENLKSSTSSCSENILVALNKSDLLEDPNQHSQ 385

Query: 334 ---------TYTEEYDHLISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHL 383
                       E    LIS    +G++ L+  +               I   +R    L
Sbjct: 386 IIKQFSEALKLPESTFCLISCANRDGIDSLMGTLIERFKIITLTTNSDPISISQRSQDIL 445

Query: 384 SQTVRYLEMASLNEKDCGLD--IIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
           S  V  L          G+D  +  E+LR +   +GKITG  V +E++L ++FS FCIGK
Sbjct: 446 SNDV--LHGFQEFRSYNGIDDVLATESLRYSVEGIGKITGEAVGIEEILGVVFSSFCIGK 503


>gi|313665711|ref|YP_004047582.1| tRNA modification GTPase TrmE [Mycoplasma leachii PG50]
 gi|312949836|gb|ADR24432.1| tRNA modification GTPase TrmE [Mycoplasma leachii PG50]
          Length = 452

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 135/450 (30%), Positives = 240/450 (53%), Gaps = 15/450 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +T+ A +T     AI++IR+SG   F +   + K KK   ++         +  ++D+ 
Sbjct: 4   NDTVVAPATNISTQAIALIRVSGSEAFLIVNKLIKDKKLEEKRGLFLRKLYFEDELIDEV 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +L  F +P SFTGE+  E   HGGI   N I+  L +    R+A  GEFS+R+F NGKID
Sbjct: 64  VLSCFVAPNSFTGENVVEIACHGGILNTNKIINILIQS-GARMALRGEFSQRSFLNGKID 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++AE + +LI ++ ++  ++ +  MSG  +    +  D L  I S I+  +D+ + +DV
Sbjct: 123 LIQAEGINNLIHAKNDLALKIGVANMSGSNNKAIIELKDNLLDIISRIQVSIDYPDYDDV 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  S +++ N +  + + I+  + + K+      G K  I+G +N GKSS+ NAL  +D 
Sbjct: 183 EGSSIEDLTNLLEIINDQINKLLMRSKMAFKNSEGIKTAIVGQTNVGKSSILNALINEDK 242

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRD++   ++LE   + + DTAGIR+T D+VE  GI ++   +  ADL+L 
Sbjct: 243 AIVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLF 302

Query: 305 LK------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY------DHLISSFTGEGLE 352
           +       ++++++     KN  +I I  K++  S   ++       + + +S     ++
Sbjct: 303 VVNKENINDLDNQEIFELLKNKTYILIVNKAEKLSKTEKQNLEKKYENIVFTSAINHNID 362

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLR 410
           +L+ +I  + L+ +  K    I      +  + Q    L  A S+ +    +DI+  +L 
Sbjct: 363 QLVLRINQMYLNEEINKNDELILIGLNQITLVEQIKNKLSTALSVIKSGMPIDIVNVDLY 422

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A   L ++ G    ++++D IF K+C+GK
Sbjct: 423 DAWNLLNELIGVEYEDEIIDNIFRKYCLGK 452


>gi|187918053|ref|YP_001883616.1| tRNA modification GTPase TrmE [Borrelia hermsii DAH]
 gi|119860901|gb|AAX16696.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Borrelia hermsii DAH]
          Length = 464

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 133/464 (28%), Positives = 235/464 (50%), Gaps = 31/464 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGLDGRI 60
             ++ I A++T  L SA+ +IR SG S       I    K+       ++ Y + +D   
Sbjct: 6   QREDDIVALATPFLSSALCVIRSSGVSSIDKFSKIFSDPKRLLEAPGHTIHYGYIIDKET 65

Query: 61  ---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              LD+ ++ ++ +P+SFTG+DS E   HG +  +  I++   K+   R+A PGEF+ R+
Sbjct: 66  CEKLDEVVVCLYRAPKSFTGQDSIEVMAHGSLIGIKRIIDFFLKV-GFRMAEPGEFTLRS 124

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F  GK+DL +AE++ +LIS++T     L++  +SG L +        + +  S +   LD
Sbjct: 125 FLAGKLDLTKAEAVNELISAKTNKTHALAVNNLSGSLFTKIDLIKKDILNFLSALSVHLD 184

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E ++ +     +V++     ++++   I        + +G  +V+ G  N GKSSLFN
Sbjct: 185 Y-ETDEYEVVIPFDVISKS---RDELKRLIDSYDTARKLDHGITLVLAGSVNVGKSSLFN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K+D AIV+   GTTRD +    +L+G L  + DTAG+RET D VE+ GI R+   ++
Sbjct: 241 LLLKEDRAIVSSYAGTTRDYIQASFELDGILFNVFDTAGLRETSDFVEQLGIVRSNSLIK 300

Query: 298 NADLILLLKEINSK---KEISFPK----NIDFIFIGTKSDLYS-----------TYTEEY 339
            A L+L + +++++    ++ F      +   +F+  K DL                   
Sbjct: 301 EASLVLYVIDLSARLTNDDLKFIDSYMGHSKVLFVLNKMDLEQDSQTVDFFNSGNINSSN 360

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVRY-LEMASLN 396
              IS+ T  G++ L +KI+S+    +  +     I S  R +  L +     +E+ +  
Sbjct: 361 LVKISTKTLFGIDSLYDKIRSLTCFDYIDINAYDVIVSSSRQVELLKKAYTLIIELLNKI 420

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+D   D++A ++      LG+ITG V  E +L+ +F  FC+GK
Sbjct: 421 EQDISYDMLAFDVYEVINLLGEITGEVTSEDVLNNMFKNFCLGK 464


>gi|313158073|gb|EFR57478.1| tRNA modification GTPase TrmE [Alistipes sp. HGB5]
          Length = 476

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 138/458 (30%), Positives = 224/458 (48%), Gaps = 41/458 (8%)

Query: 22  IIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILDKGLLIVFPSPESFTGE 78
           +IR+SG +   +C+ I +   P          +G    DGR LD  L+ VF +P S+TGE
Sbjct: 21  VIRVSGGNALTICDRIFRGSAPLADAGGYTVHYGHIMADGRTLDDVLVTVFRAPRSYTGE 80

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D+AE   HG   +V   L  L      R+A PGEF+ RA+  GK+DL +AE++AD+I+S 
Sbjct: 81  DAAEISCHGSQYIVTETL-RLLTAAGARMAQPGEFTIRAYLAGKLDLSQAEAVADIIASS 139

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +     L+   M G  S+ +    +KL H+ S +E +LDFSE E+V+     ++ + +  
Sbjct: 140 SRASHALAANQMRGGYSAAFDTLREKLLHLTSLLELELDFSE-EEVEFADRTQLRDTMRQ 198

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +K  I +  S   LG  I+ G  + I+G  N GKS+L N L  ++ A+V+DI GTTRD++
Sbjct: 199 IKERIDALRSSFSLGNAIKEGVAVAIVGAPNVGKSTLLNRLLNEERAMVSDIAGTTRDII 258

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------- 311
               +++G + +  DTAGIR T+D +E+ GI RT   +E A +I+ L + +         
Sbjct: 259 EERANIDGIVFRFLDTAGIRSTNDTLEQMGIARTMSSIERAQIIIRLIDASQPAVPVSGG 318

Query: 312 --------------------------KEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLIS 344
                                      +     +   + +  K D        E    IS
Sbjct: 319 SPSSGQTGRKSAPAVPSADSAADTQSPDFPLRPDQTLLTVYNKIDKTPGLALPEGAVGIS 378

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLD 403
           +  G+G+++L   ++  +  +      ++ S+ RH   L+     L  A    +D    D
Sbjct: 379 ARNGDGIDDLRRILRDAVDTEALYHGGTVISNSRHYEALTSASEALSAALDGLRDNLPTD 438

Query: 404 IIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440
           +++E +R     L  +TG  +  E++L  IFSKFCIGK
Sbjct: 439 LLSEEIRQVIRHLSGVTGQDIVPEEVLKTIFSKFCIGK 476


>gi|288925846|ref|ZP_06419777.1| tRNA modification GTPase TrmE [Prevotella buccae D17]
 gi|288337501|gb|EFC75856.1| tRNA modification GTPase TrmE [Prevotella buccae D17]
          Length = 512

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 134/506 (26%), Positives = 233/506 (46%), Gaps = 74/506 (14%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRY--FFGLDGRI 60
           TI A++T A   AI ++R+SG    ++ + I K    +K    +  +L Y      +   
Sbjct: 9   TICALATPAG-GAIGVVRVSGSEAIKIADHIFKAKSGRKLANAKGNTLHYGEIVNHNRET 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +  V+ +P S+TGED+ EF  HG   ++  +L  L +    R A PGE+++RA+ N
Sbjct: 68  IDDVMASVYRAPFSYTGEDAVEFSCHGSQYILQEVLHLLIQ-NGCRQAEPGEYTQRAYLN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI+S      ++++  + G  S+      D+L  + S +E +LDFS+
Sbjct: 127 GKMDLSQAEAVADLIASTNRATHKMAISQLKGHFSNELVLLRDRLLKMTSLLELELDFSD 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+++    K++L     +   I+S I   + G  ++NG  + I+G +N GKS+L N L 
Sbjct: 187 HEELEFADRKQLLELACQIDEKITSLIQSFETGNALKNGIPVAIVGKTNVGKSTLLNRLL 246

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV+DI GTTRD +     + G   +  DTAGIR+T+D VE+ GI RT+ +++ A 
Sbjct: 247 HEERAIVSDIHGTTRDTIEDTTLINGVAFRFIDTAGIRKTEDEVERIGIDRTYQKIDQAT 306

Query: 301 LILLLKE--INSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLI-------SSFTG 348
           +++ + +   ++ ++          + I +  K D+  T++  Y           S    
Sbjct: 307 VVVWMIDTSPSALEQEDMKSKCIGKNVILVHNKVDIARTHSPSYPQECLHGFQERSHCIK 366

Query: 349 EGLEELINKIKSILSNKFKKLPFS--------------------IPSHKRHLYHLSQTVR 388
           E  E L    K+ L +K +    +                    +    +  +++S    
Sbjct: 367 EKKEALSYSKKTQLYSKERSDSDNASGSPILYPSPTQLEWIYDEVFISAKQGFNISNLEA 426

Query: 389 YLEMASLNEKDCGLDII---------------------------------AENLRLASVS 415
            +  AS        DII                                 +E L +    
Sbjct: 427 AIYKASNIPNISENDIIVTNARHYDALLHAKQDIIRVQDALHANLSGDLVSEELHICLDQ 486

Query: 416 LGKIT-GCVDVEQLLDIIFSKFCIGK 440
           L +IT G +   ++L  IF  FCIGK
Sbjct: 487 LSEITGGQITPNEVLANIFKHFCIGK 512


>gi|291288764|ref|YP_003505580.1| tRNA modification GTPase TrmE [Denitrovibrio acetiphilus DSM 12809]
 gi|290885924|gb|ADD69624.1| tRNA modification GTPase TrmE [Denitrovibrio acetiphilus DSM 12809]
          Length = 437

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 140/443 (31%), Positives = 228/443 (51%), Gaps = 15/443 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI+A  +  + SA+ ++R+SG     V   +  +     R    +Y     G + D  L
Sbjct: 2   ETIYAALSPLITSAVIVVRISGSDALDVLSLLGAEGLEDKRVIHTKY----SGSVNDDVL 57

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +  F  P S+TGED  E   HG   +V+    +  K+   R A PGEF++RAF NGKIDL
Sbjct: 58  VTYFKGPASYTGEDVVEISFHGNPLIVSSAFADFEKL-GFRGAQPGEFTKRAFINGKIDL 116

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AES+A+LI S+T+     S   + G +        D   +I + IEA +DF E ED++
Sbjct: 117 TQAESVAELIDSKTKRGIDYSYSQLKGSMRKEVEGIRDIFINILTVIEAHIDFPE-EDIE 175

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                 V N++  L++ +S  +      +++R+GY+I I+G  N GKSSL N L K+D A
Sbjct: 176 EAHENIVFNNLQTLRDSVSEILRSYTTHKVLRDGYRIAIVGKPNTGKSSLMNYLLKEDRA 235

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+++ GTTRD +     L+G  V + DTAG+R TDD +EK GI++T   + +ADL+++L
Sbjct: 236 IVSEVAGTTRDYIESSFVLDGVPVSLVDTAGMRFTDDAIEKAGIEKTVSLINDADLVVVL 295

Query: 306 KE----INSKKE--ISFPKNIDFIFIGTKSDLYSTYT-EEYDHLISSFTGEGLEELINKI 358
            +    +N + E  +S  + +D + +  K D  +    +  D  +S    + ++  +N  
Sbjct: 296 LDNSLPLNHEDENVLSITEGMDRLLVVNKCDSQNILDLDNVDCHVSVKHDKNMKVFLNMC 355

Query: 359 KSILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
            + +S     +   S+   +R  ++  Q +  +E   +   +   DI    L  +   L 
Sbjct: 356 AAKVSLSDADVFGKSVMVTERQKHYFDQILTSVEKL-IEYSEIDFDIFEYELNSSLRLLS 414

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           +ITG    E +L  IF  FCIGK
Sbjct: 415 EITGLSYTEDVLSNIFDNFCIGK 437


>gi|42560644|ref|NP_975095.1| tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|81400855|sp|Q6MUE7|MNME_MYCMS RecName: Full=tRNA modification GTPase mnmE
 gi|42492140|emb|CAE76737.1| tRNA modification GTPase, TrmE [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320928|gb|ADK69571.1| tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. mycoides
           SC str. Gladysdale]
          Length = 452

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 136/450 (30%), Positives = 240/450 (53%), Gaps = 15/450 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +T+ A +T     AI++IR+SG   F +   + K KK   ++         +  ++D+ 
Sbjct: 4   NDTVVAPATNISTQAIALIRVSGSEAFLIVNKLIKDKKLEEKRGLFLRKLYFEDELIDEV 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +L  F +P SFTGE+  E   HGGI   N I+  L +    R+A  GEFS+R+F NGKID
Sbjct: 64  VLSCFVAPNSFTGENVVEIACHGGILNTNKIINILIQS-GARMALRGEFSQRSFLNGKID 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++AE + +LI ++ E+  ++ +  MSG  +    +  D L  I S I+  +D+ + +DV
Sbjct: 123 LIQAEGINNLIHAKNELALKIGVANMSGSNNKAIIELKDNLLDIISRIQVSIDYPDYDDV 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  S +++ N +  + + I+  + + K+      G K  I+G +N GKSS+ NAL  +D 
Sbjct: 183 EGSSIEDLTNLLEIINDQINKLLMRSKMAFKNSEGIKTAIIGQTNVGKSSILNALINEDK 242

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRD++   ++LE   + + DTAGIR+T D+VE  GI ++   +  ADL+L 
Sbjct: 243 AIVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLF 302

Query: 305 LK------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEE------YDHLISSFTGEGLE 352
           +       ++++++     KN  +I I  K++  S   ++       + + +S     ++
Sbjct: 303 VVNKENINDLDNQEIFELLKNKTYILIVNKAEKLSKTEKQNLEKKYQNIVFTSAINHDID 362

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLR 410
           +L+ +I  + L+ +  K    I      +  + Q    L  A S+ +    +DI+  +L 
Sbjct: 363 QLVLRINQMYLNEEINKNDELILIGLNQITLVEQIKNKLSTALSIIKSGMPIDIVNVDLY 422

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A   L ++ G    ++++D IF K+C+GK
Sbjct: 423 DAWNLLNELIGVEYEDEIIDNIFRKYCLGK 452


>gi|167975307|ref|ZP_02557584.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195659820|gb|EDX53200.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
          Length = 437

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 136/439 (30%), Positives = 227/439 (51%), Gaps = 9/439 (2%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI A++T  +  AI IIR+SGP  F++   I   K               + ++LD+ L+
Sbjct: 3   TIVALATAPMNCAIHIIRISGPQAFEMINKISTTKIKKETFKIWYTTLKDNDQVLDEVLV 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
             F  P++FTGED  E + HGG+ V N I++ L K    + A  GEFSRRA  N K+DL 
Sbjct: 63  NTFVGPKTFTGEDLVEINCHGGVIVANLIIKILIK-YGCQPAQRGEFSRRALLNKKMDLS 121

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           + E++ +L++++ E+  +  +  + G +S     +  +L  I   IE ++D+ E +DV+ 
Sbjct: 122 KIEAINNLVNAKNELSVKGVIGALLGRVSQSISDFKHELFMIIGQIEVNIDYPEYDDVEQ 181

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             +  +   +L L   I   I Q K     + G K++I+G  N GKS+L NA+  +  AI
Sbjct: 182 VDAINLKQRLLVLNEKIKKIIDQSKNCTNYK-GIKVLIIGKPNVGKSTLLNAICNEQKAI 240

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           VTDIPGTTRDV+   ++++   + I DTAGI  T+D VE  GI +    +   DL+L L 
Sbjct: 241 VTDIPGTTRDVIESSINIDNITLNILDTAGIHSTNDFVENLGINKAKELINKVDLVLYLV 300

Query: 307 EINSKKEIS---FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
             N+++++      K+   + + TK DL   Y++  D +  +     ++ LI+KIK +  
Sbjct: 301 PANNQQDLELYDLIKDQKHLLVYTKKDLIDQYSD--DQIYINAKDNDIQALIDKIKELFY 358

Query: 364 -NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITG 421
             +F      +   +R +  L      ++ A  N EK   +D++  +L   ++ L ++ G
Sbjct: 359 VQEFDNANIDVLQSQRQIGILENVNYLIDNAITNLEKGDTVDLVVADLEFCNLRLNELLG 418

Query: 422 CVDVEQLLDIIFSKFCIGK 440
                  LD +F  FC+GK
Sbjct: 419 IGSEYDFLDDLFKNFCVGK 437


>gi|50364829|ref|YP_053254.1| tRNA modification GTPase TrmE [Mesoplasma florum L1]
 gi|81392031|sp|Q6F2A3|MNME_MESFL RecName: Full=tRNA modification GTPase mnmE
 gi|50363385|gb|AAT75370.1| tRNA modification GTPase [Mesoplasma florum L1]
          Length = 452

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 238/454 (52%), Gaps = 16/454 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN+  +TI A +T     AIS+IR+SG   F +   + K K    +   +R  F     +
Sbjct: 1   MNNLNQTIVAPTTNISTQAISLIRISGDDSFNIINKLLKTKIKEEKNVWVRKMFD-GQEL 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ ++  F SP SFTGE+  E   HGGI     I+  + K    R+AN GEFS+RAF N
Sbjct: 60  VDEVVITSFVSPASFTGENVVEIACHGGILNTQRIINLIIK-NGARMANKGEFSQRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            KIDL++AE + DLI ++ E+  ++ +  MSG  +         L  I S I+  +D+ +
Sbjct: 119 NKIDLIQAEGINDLIFAKNELALKIGVNNMSGAHNQSIINLKGNLLDIISRIQVSIDYPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +DV+  S  E+   +  +  ++++ + + K+     NG K  I+G +N GKSSL NAL 
Sbjct: 179 YDDVEGSSIPELAKALSGINEEVNNLLKRSKMAIKNTNGIKTAIVGKTNVGKSSLLNALL 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +D AIVTDI GTTRD++T +++LE   + + DTAGIRET DIVE  GI+++   ++ A+
Sbjct: 239 NEDKAIVTDIHGTTRDIVTGEINLENISLNLIDTAGIRETTDIVEGLGIEKSLKIIDEAE 298

Query: 301 LILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE------YDHLISSFTG 348
           L+L + +  S  +          +N ++I +  KS+  +            + + +S   
Sbjct: 299 LVLFVVDFKSINDEENKMIFDKLENKNYILVFNKSEFINDIERNKIKDLHNNFVYTSAIN 358

Query: 349 EGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDCGLDIIA 406
             ++ LI KI+ + ++ +       I  + + +  + Q    LE   +       +DI+ 
Sbjct: 359 NDIDNLIMKIEQMHINEEIINNDSLILINLQQITLVEQVKDRLEKSLNAIIGGMPIDIVN 418

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  A   L ++ G    E+++D IF K+C+GK
Sbjct: 419 VDLHEAWDYLNQLIGEQYDEEIIDNIFKKYCLGK 452


>gi|50294530|ref|XP_449676.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528990|emb|CAG62652.1| unnamed protein product [Candida glabrata]
          Length = 487

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 154/472 (32%), Positives = 248/472 (52%), Gaps = 38/472 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGRILDKGL 65
           TI+++ T    SA+S+IR+SG     V   + ++   P  R+A LR  +  D  ++D+ L
Sbjct: 16  TIYSMVTPRAKSAVSVIRVSGDKAQYVYRKLTRRDDVPRSRQACLRGLYNGDNELIDRAL 75

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFSRRAFE 119
           ++ F SP SFTGED  EF VHGG AV   +L  +  + N      +R+A+ GEFSRR+F 
Sbjct: 76  VLYFKSPGSFTGEDVVEFQVHGGRAVSESVLSAIGSLNNRDQDVEIRMADRGEFSRRSFL 135

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK DL   E +  LI+++TE QRR +M   +G+  +L+ +W D      + + A +DFS
Sbjct: 136 NGKADLTGLEGINTLINADTEAQRRAAMGSFTGKNKALFNRWRDIAIQNSAQLTAIIDFS 195

Query: 180 EEEDVQNF---SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           E+ D  +       EV  +++ L+ +I + I++     I+ NG  + +LG  N GKSSL 
Sbjct: 196 EDSDFADEYTAVMAEVRQELMGLRTEIGNFIARVTKASIVENGINMTLLGAPNVGKSSLL 255

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLE 295
           N +A  D++IV+DIPGTTRD+++  +++ GY V + DTAGIR +T D +EK GI++ F  
Sbjct: 256 NQIASDDISIVSDIPGTTRDIVSSIVNINGYKVNLFDTAGIRVDTTDPIEKMGIEKAFKR 315

Query: 296 VENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS-------------- 333
           + ++D+ + + +      ++             + IF+  K D+                
Sbjct: 316 IGSSDICICVIDGTQPLPLNVLDLLKSSDLSGSEIIFVVNKIDIVDDSCKLSKIQQYIGN 375

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILS--NKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
             T      +S     G++EL+  +        + ++    I    R    L + V Y  
Sbjct: 376 NLTGCKICFVSCLKSTGIDELVTVLTGKFKTLTQNEENEDPIIVSDRVKEILEKDVLYGI 435

Query: 392 MASLNEKDCGLDII--AENLRLASVSLGKITGCVDV-EQLLDIIFSKFCIGK 440
              L  +D   DI+   E+LR     +GKITG V   E++LD++FSKFC+GK
Sbjct: 436 DQFLQIQDDMHDIVIATEHLRYVIDGIGKITGEVIGLEEVLDVVFSKFCVGK 487


>gi|309807783|ref|ZP_07701715.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 01V1-a]
 gi|308168885|gb|EFO70971.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 01V1-a]
          Length = 386

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 209/376 (55%), Gaps = 22/376 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60
           +TI A++T      ISIIR+SG +  ++   I +      + AS    +G      +  +
Sbjct: 9   DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L+ V  +P++FT E++ E   HGG+ V   IL+ L      R+A PGEF++RAF N
Sbjct: 68  VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+IDL +AES+ D+I ++T+  R+++M  + G L     +   +L +  +  E ++D+ E
Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMNQLEGGLLFEIRKLRQELLNTMAHEEVNIDYPE 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D+ + +SKE+ +    +  +I   ++  + G+++R+G    I+G  N GKSSL N L+
Sbjct: 187 Y-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLLNYLS 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K++ AIVT+I GTTRD L   + L+G L+K+ DTAGIR+TDDIVEK G++R+   +  +D
Sbjct: 246 KEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAITESD 305

Query: 301 LILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISSF 346
           L+LLL   + +      K +   ++   I I  K+D  +  T++            IS  
Sbjct: 306 LVLLLINSSEELTEEDQKLLELTQDKKRIVILNKADQVAKITKKDIQKITDSPIVTISVL 365

Query: 347 TGEGLEELINKIKSIL 362
             + +  L   IKS+ 
Sbjct: 366 KKQNMIGLEEAIKSLF 381


>gi|257437744|ref|ZP_05613499.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii A2-165]
 gi|257199759|gb|EEU98043.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii A2-165]
          Length = 456

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 135/457 (29%), Positives = 226/457 (49%), Gaps = 22/457 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG----- 58
           E  TI A++T      I+++RLSGP  + V   +     P  R    + +  L G     
Sbjct: 2   EHSTIAAIATAPGAGGIAVVRLSGPESYAVAAKVFCPANPAKRVEEAKGYTALFGHFMEG 61

Query: 59  -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
               D+G+ + F +P S+TGED  E   HGG AV   ++E          A PGE++RRA
Sbjct: 62  EEAFDEGVALFFRAPHSYTGEDVVELSCHGGSAVARRLVESCIAAGAA-PAAPGEYTRRA 120

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NGK+ L +AE++ DLIS++      L+   ++G L+   G   D LT +++ + A +D
Sbjct: 121 FLNGKLGLTQAEAVMDLISADGRQGAALANASLNGALAKKIGAEKDALTALQAHLTAWVD 180

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E EDV      ++++ +  +K ++ + I     G ++R G    I+G  NAGKS+L N
Sbjct: 181 FPE-EDVPALEDAQLVSTLTAVKGELDTLIRNYDAGAVLREGVDCAIVGRPNAGKSTLLN 239

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            LA  D AIVT + GTTRDV+   + L    + + DTAG+RET+D +E EGI+R++ +++
Sbjct: 240 LLAGFDRAIVTPVAGTTRDVVEQAVRLGDIRLNLFDTAGLRETEDAIEAEGIRRSWKKLD 299

Query: 298 NADLILLLKEINS---KKEISFPKNI---DFIFIGTKSDLYSTYTEEYD------HLISS 345
            A LIL + + +    +++++  +       I +  K D  + +  E         L   
Sbjct: 300 EAGLILAVFDGSEPLIREDLALAQRCAGRPAIALVNKVDKPTQFDAEIIAGDFAMVLPVC 359

Query: 346 FTGEGLEELI-NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLD 403
              EG   +I   +  +L         +  S +R L   ++    +  A        GLD
Sbjct: 360 CQEEGSRRVITAAVARLLGTNNIDPHAASLSGQRQLAAATRARDAVAGALDAVSGGFGLD 419

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++  +  A  +L  +TG    E +++ +F +FC+GK
Sbjct: 420 AVSVCVDDALDALCDLTGENASENVINEVFERFCVGK 456


>gi|167999799|ref|XP_001752604.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696135|gb|EDQ82475.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 481

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 130/481 (27%), Positives = 225/481 (46%), Gaps = 63/481 (13%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKK---------------PFPRKASLRYFFGLDGRILD 62
            A++I+RLSG S  ++   + +  K               P   +          G ++D
Sbjct: 6   GAVAIVRLSGNSAVKIVGRLFRTAKTMRNKENSHLNNEWNPKSHRVQYGNLIDASGTLVD 65

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + L++   +P S+T ED  E   HGG   V  +L+ L      RLA PGEF+ RAF NG+
Sbjct: 66  EVLVLPMLAPRSYTREDVVELQCHGGDVCVRRVLQ-LCLEAGARLAQPGEFTLRAFLNGR 124

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AES+A L++++T +  + ++ G+ G LS+       +   +   +EA LDF +  
Sbjct: 125 LDLAQAESVAQLVAAKTSVAAQSALAGIQGGLSAFVQSLRMECIDLLVEMEARLDFDD-- 182

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++ N     ++  I  +   +   ++    G ++++G ++ I+G  N GKSSL NA ++ 
Sbjct: 183 EMPNLDINALITRIETMCQRLQQALATAGRGRLLQSGLQVAIVGRPNVGKSSLLNAWSQS 242

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIVTDIPGTTRD++   + + G  V + DTAGIR+T D+VEK G++R+    + AD+I
Sbjct: 243 ERAIVTDIPGTTRDIVEARMVVGGIAVNLLDTAGIRDTADLVEKIGVERSEAVAKAADVI 302

Query: 303 LLLKEINS----KKEISFPKNI----------------------------DFIFIGTKSD 330
           +++   +       EI F +                                + +  K D
Sbjct: 303 VMVISASDGWTPADEIIFQRIWGTDGILRQRKEQTGGECEDQPGSGSVQTPSLLVVNKVD 362

Query: 331 --------LYSTYTEEYDHLISSFT--GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                   L       +   +++    G GL+EL   I  ++               R  
Sbjct: 363 RAAAGSVILPQEVQNAFFKRVATCATQGVGLQELDFAILDLVGLGHVSSEGQ--QWARQA 420

Query: 381 YHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439
             L +    L     + + D  LD+   +L+ A+++LG+I+G    E++L  IF++FCIG
Sbjct: 421 EQLVRAQEALRRVVESVQLDIPLDMWTIDLKEAAIALGEISGDDVSEEVLTNIFNRFCIG 480

Query: 440 K 440
           K
Sbjct: 481 K 481


>gi|159481624|ref|XP_001698878.1| hypothetical protein CHLREDRAFT_121098 [Chlamydomonas reinhardtii]
 gi|158273370|gb|EDO99160.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 465

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 135/456 (29%), Positives = 216/456 (47%), Gaps = 32/456 (7%)

Query: 14  GALPSA--ISIIRLSGPSCFQVCEFICKKK-------KPFPRKASLRYFFGLDGRILDKG 64
               SA  +SIIRLSG     +     +          P   +         D  +LD+ 
Sbjct: 13  PPGLSAGSVSIIRLSGTEAVPIALKAFRPGGRFRIGWSPASHRVYYGTAVDGDENVLDEV 72

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LL+V  SP S+T ED  EFH HGG      +   L +    R A PGEF+ RAF NG++D
Sbjct: 73  LLLVMLSPRSYTAEDVVEFHCHGGGVCAARVQRALIEA-GARPAKPGEFTLRAFLNGRLD 131

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AES+++L+ + T      ++ G+ G + S       +   + + +EA LDF E  D+
Sbjct: 132 LAQAESVSELVGARTAAAADSALAGLRGGVGSAVSDMRRQCLDLLAELEARLDFDE--DL 189

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                  + + I  ++  I   +   + G ++R G ++ I+G  N GKSSL NA    D 
Sbjct: 190 PPIDVPALKSQIEAIQAGIEKALRTARAGSLLRRGLQVAIVGRPNVGKSSLLNAWTNSDR 249

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT+I GTTRDVL   L + G  V + DTAGIR++ D+VE+ G++R+      AD++++
Sbjct: 250 AIVTEIAGTTRDVLEAQLSVGGVPVTLLDTAGIRDSTDVVERIGVERSQAAAAAADVVIM 309

Query: 305 LKEI-----NSKKEI--SFPKNIDFIFIGTKSDLYSTYTE----------EYDHLISSFT 347
           + +      ++  EI  S   +   + +  K DL +                    S+  
Sbjct: 310 VVDSAEGWTDADTEIYRSLWGDGPALLVANKDDLRAAGAAIQLVERQSTFSATVRTSASQ 369

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPS--HKRHLYHLSQTVRYLEMASLN-EKDCGLDI 404
            +GLE L   +  +           +    ++R    L ++   L   S +   D  LD 
Sbjct: 370 RKGLESLDAALLDLAGAPQLAASGGVSWAVNERQAEALVRSHEALMRLSESVAADLPLDF 429

Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +LR A ++LG+++G    E++LD +FS+FCIGK
Sbjct: 430 WTIDLRSALLALGEVSGDEVAEEVLDNVFSRFCIGK 465


>gi|224532071|ref|ZP_03672703.1| tRNA modification GTPase TrmE [Borrelia valaisiana VS116]
 gi|224511536|gb|EEF81942.1| tRNA modification GTPase TrmE [Borrelia valaisiana VS116]
          Length = 464

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 237/462 (51%), Gaps = 31/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
            + I A++T  L SA+ +IR SG S       I          +     +G      +  
Sbjct: 8   DDDIVALATPFLSSALCVIRSSGASSISKFSKIFSNHSALSSASGNTIHYGYILDRENNC 67

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ ++ ++ +P+SFTG+D+ E   HG +  +  I++ L      R+A PGEF+ RAF 
Sbjct: 68  KVDEVVVCLYRAPKSFTGQDAIEVMAHGSVVGIKKIID-LFLKSGFRMAEPGEFTLRAFL 126

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
             KIDL +AE++ +++ ++T     L++  +SG L          + +  S +   LD+ 
Sbjct: 127 AKKIDLTKAEAINEIVFAKTNKTYSLAVNKLSGALFVKIDAIKKNILNFLSAVSVYLDYE 186

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            ++   N     +LN     K ++   I+  K+ E I +G  +V+ G  NAGKSSLFN  
Sbjct: 187 VDDHEINIPFDLILNS----KAELKKLINSYKIYEKIDHGVTLVLAGSVNAGKSSLFNLF 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++   ++ A
Sbjct: 243 LKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNSLIKEA 302

Query: 300 DLILLLKEINS---KKEISFPK----NIDFIFIGTKSDL-YSTYTEEYD----------H 341
            L++ + ++NS   + +ISF      N   +F+  K DL  +  TEE+            
Sbjct: 303 SLVIYVIDVNSNLTRDDISFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSSVLNSSNLI 362

Query: 342 LISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
           +IS+   EG++ L +KI++++S +     L   I S +R +  L +     L++ S  ++
Sbjct: 363 MISTKNLEGIDILYDKIRALISYERVEIGLDDIIISSRRQIQLLEKAYALILDLLSKIDR 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D++A +       LG+ITG V  E +L+ +F  FC+GK
Sbjct: 423 QVSYDMLAFDAYEIINCLGEITGEVSSEDVLNNMFKNFCLGK 464


>gi|156843181|ref|XP_001644659.1| hypothetical protein Kpol_1056p1 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115307|gb|EDO16801.1| hypothetical protein Kpol_1056p1 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 505

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 149/480 (31%), Positives = 253/480 (52%), Gaps = 46/480 (9%)

Query: 7   TIFAVSTGALP-SAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLDG-----R 59
           TI+A++T     SAI+++R+SG     +   +   K +P PR A LR  + ++       
Sbjct: 26  TIYALATPPGRKSAIAVVRISGEQSKYIYRKLTDAKTEPKPRSALLRNLYNIEKYKDKKT 85

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEF 113
           +LD  L+  F SP+SFTGEDS E H+HGG A+ N +++ +  + N      +R A PGEF
Sbjct: 86  LLDNALIFFFQSPKSFTGEDSLELHLHGGKAICNAVIKTIETLHNRDEGIEIRQAQPGEF 145

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           S+RAF+NGK DL E E + ++I SETE QR  ++    G+   ++  W +K+    + + 
Sbjct: 146 SQRAFQNGKYDLTEIEGIKEIIDSETESQRLSALSSFMGQNKKMFNSWREKIVENIAQLT 205

Query: 174 ADLDFSEEEDVQNFS--SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           A +DF E+ D+++       +  +I+ L+ D+ + + + +   I+++G ++ ++G  N G
Sbjct: 206 AIIDFGEDIDIEDTEKLFNRIEANIIGLERDVHTFLKRVEKANILQDGIRMTLIGVPNTG 265

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIK 290
           KSSL N +   +++IV+DIPGTTRD +   +++ GY V ISDTAGIR+ T++ +E  GI+
Sbjct: 266 KSSLINKITSDEISIVSDIPGTTRDSIDAIININGYKVIISDTAGIRKDTNEKIEVLGIE 325

Query: 291 RTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDLYSTYT---- 336
           R+      +D+ L+L + N+K  +S            K      I  K+DL         
Sbjct: 326 RSKKMASRSDICLVLIDPNNKPLLSNEIIDLLQAPEIKRKHLRIIVNKTDLIKNENILEN 385

Query: 337 -----------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHL 383
                      +   + IS  T  G+E+LI ++     +   K      I   +R +  L
Sbjct: 386 LQEEIVTKYNLKIPINFISCATESGIEKLIYELTDTFDDLSNKSEDGNPIIVSERVVEIL 445

Query: 384 SQTVRY--LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD-VEQLLDIIFSKFCIGK 440
              V Y   E  +    +  + +  E+L+ A+  +GKITG    V+++L  +F+ FC+GK
Sbjct: 446 KNDVVYGINEFKNFKNYNNDVVMATESLKYAADGIGKITGDTVGVDEVLGSVFANFCVGK 505


>gi|68472595|ref|XP_719616.1| potential mitochondrial tRNA modification protein [Candida albicans
           SC5314]
 gi|68472852|ref|XP_719491.1| potential mitochondrial tRNA modification protein [Candida albicans
           SC5314]
 gi|46441310|gb|EAL00608.1| potential mitochondrial tRNA modification protein [Candida albicans
           SC5314]
 gi|46441440|gb|EAL00737.1| potential mitochondrial tRNA modification protein [Candida albicans
           SC5314]
          Length = 529

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 156/483 (32%), Positives = 266/483 (55%), Gaps = 44/483 (9%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGLDGR- 59
           N  K T+FA+ST    SAI+++R+SGP    +   +    K P  R AS+R  +  +   
Sbjct: 47  NPLKPTVFALSTKFGKSAIAVVRISGPQSKYIYHKLTNSTKPPKNRIASVRKLYSPEPHS 106

Query: 60  -----ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLA 108
                 LD+ L +  P P+++TGED  E H+HGG+A++  +L+ + K+ +      +R A
Sbjct: 107 NKKSVFLDEALTLFLPGPKTYTGEDLLELHLHGGVAIIKSVLQSIKKLHDPNNGVIIRQA 166

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
           + GEFS++AF NG++DL E E + D+I++ETE QR  S+   SG+    + +W +++ + 
Sbjct: 167 DRGEFSKQAFYNGRLDLTELEGINDMINAETESQRLASLASSSGQTKIEFMKWRNEIINQ 226

Query: 169 RSFIEADLDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            + +   +DF E+ D++      ++V  +I  ++++I +++S+ K  +I+ NG ++ +LG
Sbjct: 227 MANLTMIIDFGEDHDIEETDRMIRDVKENIAKIESEIKAYLSKVKSSQILLNGIQLALLG 286

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIV 284
             NAGKSS+ N LA KD AIV++I GTTRD+L I L++ GY V + DTAGIR  E  D +
Sbjct: 287 PPNAGKSSILNILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFEEADSI 346

Query: 285 EKEGIKRTFLEVENADLILLLKEINS--KKEISFPK--------NIDFIFIGTKSDLYST 334
           E+EGIKR       AD ++++ +  S  K+ +   +        N   + +  K DL+++
Sbjct: 347 EQEGIKRAKQRSMLADFVIVVLDPMSVEKEPLELKEHLKTLVKANKQMLIVLNKQDLFAS 406

Query: 335 YTEE--------------YDHLISSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRH 379
            +EE              Y H++S  TG G++ L   +     +  + +    I    R 
Sbjct: 407 RSEEMISNYSRLLDLPKNYFHVVSCSTGSGIDNLQKLLIEKFKDLSQSETSNPIIVSSRV 466

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAEN-LRLASVSLGKITGC-VDVEQLLDIIFSKFC 437
              L   + +      +  D    ++A + LR +   +GKITG  +D+E++LD++FS FC
Sbjct: 467 QDILENDILFGFKEFYHWADAEDVLVATDCLRQSVDGIGKITGQSIDLEEILDVVFSSFC 526

Query: 438 IGK 440
           IGK
Sbjct: 527 IGK 529


>gi|331703092|ref|YP_004399779.1| tRNA modification GTPase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801647|emb|CBW53800.1| tRNA modification GTPase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 452

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 134/450 (29%), Positives = 239/450 (53%), Gaps = 15/450 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +T+ A +T     AI++IR+SG   F +   + K KK   ++            ++D+ 
Sbjct: 4   NDTVVAPATNISTQAIALIRVSGSEAFLIVNKLIKDKKLEEKRGLFLRKLYFKNELIDEV 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +L  F +P SFTGE+  E   HGGI   N I+  L +    R+A  GEFS+R+F NGKID
Sbjct: 64  VLSCFVAPNSFTGENVVEIACHGGILNTNKIINILIQS-GARMALRGEFSQRSFLNGKID 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++AE + +LI ++ ++  ++ +  MSG  +    +  D L  I S I+  +D+ + +DV
Sbjct: 123 LIQAEGINNLIHAKNDLALKIGVANMSGSNNKAIIELKDNLLDIISRIQVSIDYPDYDDV 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  S +++ N +  + + I+  + + K+      G K  I+G +N GKSS+ NAL  +D 
Sbjct: 183 EGSSIEDLTNLLEVINDQINKLLMRSKMAFKNSEGIKTAIVGQTNVGKSSILNALINEDK 242

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRD++   ++LE   + + DTAGIR+T D+VE  GI ++   +  ADL+L 
Sbjct: 243 AIVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLF 302

Query: 305 LK------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY------DHLISSFTGEGLE 352
           +       ++++++     K+  +I I  K++  S   ++       + + +S     ++
Sbjct: 303 VVNKENINDLDNQEIFDLLKDKTYILIVNKAEKLSQTEKQNLEKKYENIVFTSAINHDID 362

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLR 410
           +L+ +I  + L+ +  K    I      +  + Q    L  A S+ +    +DI+  +L 
Sbjct: 363 QLVLRINQMFLNEEISKNDELILIGLNQITLVEQIKNKLSTALSVIKSGMPIDIVNVDLY 422

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A   L ++ G    ++++D IF K+C+GK
Sbjct: 423 DAWNLLNELIGVEYEDEIIDNIFRKYCLGK 452


>gi|238881895|gb|EEQ45533.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 499

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 157/483 (32%), Positives = 267/483 (55%), Gaps = 44/483 (9%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGLDGR- 59
           N  K T+FA+ST    SAI+++R+SGP    +   +    K P  R AS+R  +  +   
Sbjct: 17  NPLKPTVFALSTKFGKSAIAVVRISGPQSKYIYHKLTNSTKPPKNRIASVRKLYSPEPHS 76

Query: 60  -----ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLA 108
                 LD+ L +  P P+++TGED  E H+HGG+A++  +L+ + K+ +      +R A
Sbjct: 77  NKKSVFLDEALTLFLPGPKTYTGEDLLELHLHGGVAIIKSVLQSIKKLHDPNNGVIIRQA 136

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
           + GEFS++AF NG++DL E E + D+I++ETE QR  S+   SG+    + +W +++ + 
Sbjct: 137 DRGEFSKQAFYNGRLDLTELEGINDMINAETESQRLASLASSSGQTKIEFMKWRNEIINQ 196

Query: 169 RSFIEADLDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            + +   +DF E+ D++      ++V  +I  ++++I +++S+ K  +I+ NG ++ +LG
Sbjct: 197 MANLTMIIDFGEDHDIEETDRMIRDVKENIAKIESEIKAYLSKVKSSQILLNGIQLALLG 256

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIV 284
             NAGKSS+ N LA KD AIV++I GTTRD+L I L++ GY V + DTAGIR  E  D +
Sbjct: 257 PPNAGKSSILNILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFEEADSI 316

Query: 285 EKEGIKRTFLEVENADLILLLKEINS--KKEISFPK--------NIDFIFIGTKSDLYST 334
           E+EGIKR       ADL++++ +  S  K+ +   +        N   + +  K DL+++
Sbjct: 317 EQEGIKRAKQRSMLADLVIVVLDPMSVEKEPLELKEHLKTLVKANKQMLIVLNKQDLFAS 376

Query: 335 YTEE--------------YDHLISSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRH 379
            +EE              Y H++S  TG G++ L   +     +  + +    I    R 
Sbjct: 377 RSEEMISNYSRLLDLPKNYFHVVSCSTGSGIDNLQKLLIEKFKDLSQSETSNPIIVSSRV 436

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAEN-LRLASVSLGKITGC-VDVEQLLDIIFSKFC 437
              L   + +      +  D    ++A + LR +   +GKITG  +D+E++LD++FS FC
Sbjct: 437 QDILENDILFGFKEFYHWADAEDVLVATDCLRQSVDGIGKITGQSIDLEEILDVVFSSFC 496

Query: 438 IGK 440
           IGK
Sbjct: 497 IGK 499


>gi|226229337|ref|YP_002763443.1| putative tRNA modification GTPase TrmE [Gemmatimonas aurantiaca
           T-27]
 gi|226092528|dbj|BAH40973.1| putative tRNA modification GTPase TrmE [Gemmatimonas aurantiaca
           T-27]
          Length = 452

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 130/449 (28%), Positives = 222/449 (49%), Gaps = 15/449 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFGL-DGRIL 61
            +TI A++T     A++++RLSG     +   +      +P  R A             L
Sbjct: 6   DDTIVALATPPGRGAVALVRLSGARAVDIARALGAYDTGQPEARHALRAVLHDPVSREPL 65

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ L+  F  P S+TGE + E   HGG      + +        R A PGEF+RRA  NG
Sbjct: 66  DEVLVTWFAPPRSYTGEMTVEITTHGGHIAPMRV-QAACIAAGARPALPGEFTRRAVLNG 124

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DLL+AE++AD+I + T   ++ ++  + G LS       +++ H+ + I  D+DF EE
Sbjct: 125 RLDLLQAEAVADIIDARTSAMQQQALTQLDGGLSRRLLALREEVVHLEALIAYDIDFPEE 184

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +D    +S+ + +    L + + + +     G ++R+G  +V+ G  NAGKSSLFNAL  
Sbjct: 185 DDGPIAASR-ITDAGERLVSSLDALLRTAPAGTMVRDGALVVLAGPPNAGKSSLFNALLG 243

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +  AIVT I GTTRD +   LD   + +++ DTAG+R+T D +E+ GI+ +   +  A +
Sbjct: 244 QSRAIVTPIAGTTRDAIEALLDRTPWPLRLVDTAGLRDTTDPIEQLGIEVSRRYLAQAQV 303

Query: 302 ILLLKE-----INSKKEISFPKNIDFIFIGTKSDLY-STYTEEYDHLISSFTGEGLEELI 355
           +L   +     + + + ++       + + TK DL     T    HL+S+ +GEGL  L+
Sbjct: 304 VLACGDDMESVVQTIEALAPHTAASVLAVHTKWDLIGPETTWVNIHLVSAESGEGLTSLL 363

Query: 356 NKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRL 411
             I + L           ++ + +RH   L+     +     +         + A +L  
Sbjct: 364 QAIDTALGATAVVSASNDAVITRERHRAGLTNARDEVRAFLDAWTSGALPAPVAAVHLFT 423

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A  +L  + G +D + +LD +F  FCIGK
Sbjct: 424 AREALSDLIGTIDTDDVLDRVFRDFCIGK 452


>gi|154276802|ref|XP_001539246.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414319|gb|EDN09684.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1231

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 161/543 (29%), Positives = 253/543 (46%), Gaps = 116/543 (21%)

Query: 7    TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLD-----GRI 60
            TI+A+ST    +AI+I+R+SGP+C Q+ + +C K+  P PR A+LR  F          I
Sbjct: 679  TIYALSTAPGRAAIAIVRVSGPACVQIYDALCPKRPLPNPRVAALRTLFDPSVPPSVNSI 738

Query: 61   LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL-----------RLAN 109
            LD+ +++ FP+P + TGED  E H+HGG AVV  +L  + +               R A 
Sbjct: 739  LDRAVVLHFPAPNTVTGEDVLELHIHGGPAVVKAVLNAIPRCAGAFSNEKIAMPSIRYAE 798

Query: 110  PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
            PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G SG L+  Y +W  +L + R
Sbjct: 799  PGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERWRQQLLYAR 858

Query: 170  SFIEADLDFSEEEDVQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
              +EA +DFSE++       +    +  ++  L   I+ HI     GE++R+G ++ +LG
Sbjct: 859  GEMEALIDFSEDQHFDESIEEFVSSITGEVRNLVRQINLHIENASKGELLRSGIRVALLG 918

Query: 227  HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD----- 281
              NAGKSSL N +  ++ AIV+   GTTRD++ + +D+ GY  K  D AG+R        
Sbjct: 919  APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGYFCKFGDMAGLRSGHIARSG 978

Query: 282  ----DIVEKEGIKRTFLEVENADLILLLKEINSKKE-------------------ISFPK 318
                  VE+EGI+R       +D+++++  +                        I+  K
Sbjct: 979  SMPIGAVEQEGIRRAKARALESDVVIVVLSLEESDNGTGVKLVLEPEVVDAVRSCIALEK 1038

Query: 319  NIDFIFIGTKSDLYS-------------------------TYTEEYDHLISSFTGEG--- 350
            ++       K D YS                           T++   LIS    E    
Sbjct: 1039 HMIVAV--NKFDKYSPTTYTARTQQKFVDSLTEEISSVEPRLTQDQIFLISCREAENEVS 1096

Query: 351  -----------LEELINKIKSI-----LSNKFKKL-----PFSIPSHKRHLYHLSQTVRY 389
                       L ELI   K +     L N  ++        S+    R   +L + V++
Sbjct: 1097 QEADPGNIQKFLGELIRTFKRMSTPSELDNGNEQFDKLYWEDSLGVTHRQSSNLQKCVQH 1156

Query: 390  L------------EMASLNEKDCGLDII--AENLRLASVSLGKITGC---VDVEQLLDII 432
            L              A+  + +   DI+  AE+LR A+  L KITG     DVE +L ++
Sbjct: 1157 LNDFLSQTCQTPDNAANAEQIEVNFDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVV 1216

Query: 433  FSK 435
            F K
Sbjct: 1217 FEK 1219


>gi|219685816|ref|ZP_03540625.1| tRNA modification GTPase TrmE [Borrelia garinii Far04]
 gi|219672649|gb|EED29679.1| tRNA modification GTPase TrmE [Borrelia garinii Far04]
          Length = 464

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 136/462 (29%), Positives = 236/462 (51%), Gaps = 31/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGR--- 59
            + I A++T  L SA+ +IR SG S       I             ++ Y + LD     
Sbjct: 8   DDDIVALATPFLSSALCVIRSSGASSISKFSKIFSNHSALNSAPGNTIHYGYILDNENNC 67

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ ++ ++ +P+SFTG+DS E   HG +  +  I++ L      R+A PGEF+ R+F 
Sbjct: 68  KVDEVVVCLYRAPKSFTGQDSIEVIAHGSVIGIKKIID-LFLKSGFRMAEPGEFTLRSFL 126

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
             KIDL +AE++ ++I ++T     L++  +SG L          + +  S +   LD+ 
Sbjct: 127 AKKIDLTKAEAINEIIFAKTNKTYSLAVNKLSGALFVKIDAIKGCILNFLSAVSVYLDYE 186

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            ++   +     +LN     K ++   I+  K+ E I +G  +V+ G  N GKSSLFN  
Sbjct: 187 VDDHEISIPFDLILNS----KAELKKLINSYKVYEKIDHGVTLVLAGSVNVGKSSLFNMF 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++   ++ A
Sbjct: 243 LKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNSLIKEA 302

Query: 300 DLILLLKEINS---KKEISFPK----NIDFIFIGTKSDL-YSTYTEEYD----------H 341
            L++ + +++S   +++  F      N   +F+  K DL  +  TEE+            
Sbjct: 303 SLVIYVIDVSSNLTREDFLFIDSNKSNSKILFVLNKIDLNINKSTEEFVRSNVLNSSNLI 362

Query: 342 LISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
           +IS+   EG++ L +KIK+++S +     L   I S  R +  L +     L++ +  ++
Sbjct: 363 MISTKNLEGIDILYDKIKTLISYEKVEIGLDDIIISSSRQMQLLEKAYALVLDLLNKIDR 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 423 QVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|33860749|ref|NP_892310.1| tRNA modification GTPase TrmE [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|46577387|sp|Q7V395|MNME_PROMP RecName: Full=tRNA modification GTPase mnmE
 gi|33633691|emb|CAE18648.1| putative thiophen / furan oxidation protein [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 460

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 162/458 (35%), Positives = 244/458 (53%), Gaps = 25/458 (5%)

Query: 4   EKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----L 56
            ++TI A+++        I++IR+SG      C+ I + K  +  + S R F G     L
Sbjct: 7   TEDTIAAIASAVSLGKGGIAVIRVSGEEAINSCKNIVETKSKYAWE-SHRVFHGFIKDNL 65

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-NLRLANPGEFSR 115
           + + +D+ L+ V  SP SFTGED  E H HGG+ VVN ++E L      +R+ANPGEFS+
Sbjct: 66  ENKFIDEILITVMHSPNSFTGEDIVELHCHGGVIVVNKVIETLLSNNTGVRIANPGEFSQ 125

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NGKIDL +AES+  LI+++      ++  G+ GE+        + L    S IEA 
Sbjct: 126 RAFLNGKIDLTQAESINQLINAKNLKSAEIAFNGVKGEIKKKIDIIKNDLIEQLSEIEAR 185

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF E  D   F+  +   +I  +K  I   I   K G  I NG  I ++G +N GKSSL
Sbjct: 186 VDFEE--DFSEFNYNDFSRNIKIIKEKIKILIENSKRGAHIHNGISIALIGKTNVGKSSL 243

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L+KK+ AIVT IPGTTRD++ ++L ++   +KI DTAGIRETD+ +E  GI ++F  
Sbjct: 244 LNLLSKKEKAIVTSIPGTTRDIIEVNLTIKDIPIKIIDTAGIRETDEYIENIGIDKSFEM 303

Query: 296 VENADLILLLKEI------NSKKEIS-FPKNIDFIFIGTKSDLYS-----TYTEEYDHLI 343
           ++N+D I+ L  +      + +K IS  P+      +G K DL               L+
Sbjct: 304 IQNSDYIIYLYSLEEGLNKDDEKIISKIPQEKLITILGNKKDLIDSKKVNKKNLSNSVLM 363

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGL 402
           S    EG +EL+ KI        +     I  ++R + +L+  ++ L     +       
Sbjct: 364 SIKNDEGEKELVEKIVKK-CGSKEFENIDIFLNERQISNLTDCLKNLNDTDPIIANKLPF 422

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+++  +R    +L +ITG    E LL+ IFSKFCIGK
Sbjct: 423 DLLSIEVRDGIKNLSRITGQELTEDLLNNIFSKFCIGK 460


>gi|296417286|ref|XP_002838289.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634217|emb|CAZ82480.1| unnamed protein product [Tuber melanosporum]
          Length = 608

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 153/507 (30%), Positives = 260/507 (51%), Gaps = 73/507 (14%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDG--RILDK 63
           TI+A++T +  +AI+++R+SGP+C  V   +C  +  P PRKA+LR  +  +    +LD 
Sbjct: 102 TIYALATASGRAAIAVVRVSGPACLNVYSSLCPSRPLPTPRKATLRTLYRPNSPKEVLDP 161

Query: 64  G-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP----NLRLANPGEFSRRAF 118
           G L++ FP+P S TGED  E H+HGG A++  +L  ++ +     ++R A PGEF+RRAF
Sbjct: 162 GALVLFFPAPNSHTGEDVLELHLHGGPAIIRAVLFSISTLSTPQLSIRPAGPGEFTRRAF 221

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            N ++ L + E+L D +S+ETE QR+LS++  +  LS  Y QW   L   R  +EA +DF
Sbjct: 222 TNNRLSLPQIEALGDTLSAETEQQRKLSVQATTSGLSRKYEQWRRMLLSARGELEAIIDF 281

Query: 179 SEEEDVQNFSSKEVLNDI---LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           SE++      ++   N +     LK  +  H+     GE++R G  + ++G  NAGKSSL
Sbjct: 282 SEDQQFDTAPAEMCSNVVSLVQELKPMLQLHVDNAVRGELLRGGISLALIGAPNAGKSSL 341

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTF 293
            N +  ++ AIV+   GTTRDV+ + +D+ GY+  ++DTAG+R+ +    +EKEG+ R  
Sbjct: 342 LNRVVGREAAIVSGEAGTTRDVVDLSVDIGGYMALLADTAGLRKAELAGEIEKEGMWRAK 401

Query: 294 LEVENADLILLLKEINSKKE--------ISFPKN------------IDFIFIGTKSDLYS 333
             V+++ +++ +  I ++ +        +  P                 +    K+DL  
Sbjct: 402 KRVQDSHVVIAVLSIETRNDNNGNNTPYLPIPDEVLEVLREAQDQCKPVLIAVNKTDLLH 461

Query: 334 TYTEE--------------YDHLISSFTG---------EGLEELINKIKSILS------- 363
             T +                   +   G         +G++ L+  +  I +       
Sbjct: 462 LPTGQTLPERFLNQITPHFPALQHTHIHGITCTHPSPSDGIQPLLRTLTQIFTQITTAEI 521

Query: 364 --NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDII--AENLRLASVSLG 417
             +    L  +I +  R    L + + YL+     +  +DC  D++  AE LR A+  L 
Sbjct: 522 DSDASSSLGDAIGATDRQRRLLEECISYLDAFLDRIAGEDCETDMVVAAEELRFAAGCLA 581

Query: 418 KIT----GCVDVEQLLDIIFSKFCIGK 440
           +IT    G  DVE++L ++F KFC+GK
Sbjct: 582 QITGIGEGSGDVEEVLGVVFEKFCVGK 608


>gi|317148818|ref|XP_001822938.2| cytokinesis protein sepA [Aspergillus oryzae RIB40]
          Length = 2209

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 160/545 (29%), Positives = 258/545 (47%), Gaps = 111/545 (20%)

Query: 7    TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGRI----- 60
            TI+A+ST +  +AI+++R+SGP C ++ + +C K   P PR A++R  F           
Sbjct: 1665 TIYALSTASGRAAIAVVRVSGPGCVRIYQALCPKAALPRPRFAAVRTLFDPTREPSSSSA 1724

Query: 61   LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSR 115
            LD G L++ FP+P + TGED  E H+HGG A+V  +L  ++++      +R A PGEF+R
Sbjct: 1725 LDAGALVLYFPAPNTVTGEDVLELHLHGGPAIVKSVLTAISRVSQPDSLVRYAEPGEFTR 1784

Query: 116  RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
            RAF N ++DL + E+L D +S++TE QRRL++ G S  LS  Y QW  +L + R  +EA 
Sbjct: 1785 RAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSRRYEQWRQQLLYARGELEAL 1844

Query: 176  LDFSEEEDVQNFSSKEVL---NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
            +DF+E++     S + VL     +  L+  +  HI     GE++R+G KI +LG  NAGK
Sbjct: 1845 IDFAEDQHFDESSDELVLSVAAQVQALRVQVGFHIQNASKGELLRHGIKIALLGAPNAGK 1904

Query: 233  SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---------DI 283
            SSL N +  K+ AIV+   GTTRD++ + +DL G+  K+ D AGIR              
Sbjct: 1905 SSLLNQIVGKEAAIVSTEEGTTRDIVDVGVDLSGWYCKLGDMAGIRSEPVNGKESVVIGA 1964

Query: 284  VEKEGIKRTFLEVENADLILLLK------------EINSKKEI------SFPKNIDFIFI 325
            VEKEGI+R       +D+++++             +++ ++E+          +   +  
Sbjct: 1965 VEKEGIRRAKARALESDVVIVVLSLERGAFDDIPYQLSIEQEVVEAVNDCLAADKCIVIA 2024

Query: 326  GTK----------------------SDLYSTYTEEYDHLISSFTGEGLEELIN----KIK 359
              K                      SDL+ T  ++    IS    +    L       ++
Sbjct: 2025 INKCDRLPLDVHNSQFLPEQLLASVSDLFPTVPQKRIFGISCREAQLESALERKDPGHLQ 2084

Query: 360  SILSNKFKKL----------------------PFSIPSHKRHLYHLSQTVRYLEMASLNE 397
              L                               S+    R   +L + +++L+      
Sbjct: 2085 EFLRGLISTFEEIASPSGIEGDANGDYNLSYWEDSLGVTHRQSSNLQRCLQHLDDFLAQT 2144

Query: 398  K-----------------DCGLDII--AENLRLASVSLGKITGC---VDVEQLLDIIFSK 435
                              +  +DI+  AE+LR A+ +L KITG     DVE +L ++F K
Sbjct: 2145 SRKHAPSMLGHEHEQQPIEMEIDIVTAAEHLRFAADALAKITGKGESGDVEDVLGVVFEK 2204

Query: 436  FCIGK 440
            FC+GK
Sbjct: 2205 FCVGK 2209


>gi|158520121|ref|YP_001527991.1| tRNA modification GTPase TrmE [Desulfococcus oleovorans Hxd3]
 gi|158508947|gb|ABW65914.1| tRNA modification GTPase TrmE [Desulfococcus oleovorans Hxd3]
          Length = 462

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 132/449 (29%), Positives = 211/449 (46%), Gaps = 28/449 (6%)

Query: 18  SAISIIRLSGPSCFQVCEFICKKKKPFPRKA-------SLRYFFGL---DGRILDKGLLI 67
             I I+RLSGP    +   +   +      +       S R + G    D  ++D+ LL+
Sbjct: 16  GGIGIVRLSGPRAVAIALSVFSSRPDAAAASLSEAGAESHRMYHGYVFDDDALVDEVLLV 75

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127
           V  +P S+TGED AE H HGG AVV+ + + L        A PGEF++RAF NG+IDL +
Sbjct: 76  VMRAPRSYTGEDVAEIHTHGGPAVVSAVCD-LVLRAGAEPAAPGEFTQRAFLNGRIDLTQ 134

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           AE++AD+I + +  Q + +   +SGE+          L  + + +EA ++F ++ +    
Sbjct: 135 AEAVADMIEAASIEQVKAAAAQVSGEIRQAVSGLKQSLAGLMAEMEAAIEFDDQVEGSFS 194

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             K        +   +   + + +  E  R G  +VI G  NAGKS+L N L   D A+V
Sbjct: 195 PEKAACRIETEVLPCLQDLLDRRRATEAGR-GATVVIAGPPNAGKSTLLNRLLGTDRALV 253

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLK 306
           ++IPGTTRD++   + + G     +DTAG+R ++ D VE  G+ R    ++ ADLIL + 
Sbjct: 254 SEIPGTTRDLVDGRVWVSGTPFVFTDTAGLRPDSGDAVEAMGMARARTAMDQADLILFVV 313

Query: 307 EI------NSKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLISSFTGEGLE 352
           +        S           F+ +  KSDL         S +       +S+  G G++
Sbjct: 314 DAAAGMGPESGALFCEASAKPFVVVANKSDLPEARGFMPPSAWPAAPVVHVSALHGLGIK 373

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRL 411
           EL N +  ++  +          + RH   L      L  A    K+    D+   ++R 
Sbjct: 374 ELKNLLVRMVGEQAVPASGRAAPNPRHRAALVACREALVAAGAALKNGVPADVAVLDIRA 433

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   L +I+G      +LD IF +FCIGK
Sbjct: 434 AVDRLNEISGEGAGPTVLDAIFERFCIGK 462


>gi|15594524|ref|NP_212313.1| tRNA modification GTPase TrmE [Borrelia burgdorferi B31]
 gi|195941910|ref|ZP_03087292.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 80a]
 gi|216264582|ref|ZP_03436574.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 156a]
 gi|218249887|ref|YP_002374707.1| tRNA modification GTPase TrmE [Borrelia burgdorferi ZS7]
 gi|221217543|ref|ZP_03589013.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 72a]
 gi|223889248|ref|ZP_03623836.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 64b]
 gi|224532855|ref|ZP_03673470.1| tRNA modification GTPase TrmE [Borrelia burgdorferi WI91-23]
 gi|225548539|ref|ZP_03769587.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 94a]
 gi|226320914|ref|ZP_03796465.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 29805]
 gi|226321497|ref|ZP_03797023.1| tRNA modification GTPase TrmE [Borrelia burgdorferi Bol26]
 gi|3915895|sp|P53364|MNME_BORBU RecName: Full=tRNA modification GTPase mnmE
 gi|226704779|sp|B7J1B2|MNME_BORBZ RecName: Full=tRNA modification GTPase mnmE
 gi|2688058|gb|AAC66556.1| thiophene and furan oxidation protein (thdF) [Borrelia burgdorferi
           B31]
 gi|215981055|gb|EEC21862.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 156a]
 gi|218165075|gb|ACK75136.1| tRNA modification GTPase TrmE [Borrelia burgdorferi ZS7]
 gi|221192606|gb|EEE18823.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 72a]
 gi|223885281|gb|EEF56383.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 64b]
 gi|224512244|gb|EEF82630.1| tRNA modification GTPase TrmE [Borrelia burgdorferi WI91-23]
 gi|225370802|gb|EEH00237.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 94a]
 gi|226232686|gb|EEH31439.1| tRNA modification GTPase TrmE [Borrelia burgdorferi Bol26]
 gi|226233686|gb|EEH32416.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 29805]
 gi|312149716|gb|ADQ29787.1| tRNA modification GTPase TrmE [Borrelia burgdorferi N40]
          Length = 464

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 235/462 (50%), Gaps = 31/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
            + I A++T  L SA+ +IR SG S       I          +     +G      +G 
Sbjct: 8   DDDIVALATPFLSSALCVIRSSGASSISKFSKIFSNHSALNSASGNTIHYGYILDSENGC 67

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ ++ ++ +P+SFTG+D+ E   HG +  +  I++ L      R+A PGEF+ RAF 
Sbjct: 68  KVDEVVVCLYRAPKSFTGQDAIEVMAHGSVIGIKKIID-LFLKSGFRMAEPGEFTLRAFL 126

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
             KIDL +AE++ ++I ++T     L++  +SG L          + +  S +   LD+ 
Sbjct: 127 AKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGALFVKIDAIKKSILNFLSAVSVYLDYE 186

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            ++   +     +L+     K ++   I+  K+ E I NG  +V+ G  NAGKSSLFN  
Sbjct: 187 VDDHEISIPFDLILSS----KAELKKLINSYKVYEKIDNGVALVLAGSVNAGKSSLFNLF 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++   ++ A
Sbjct: 243 LKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNSLIKEA 302

Query: 300 DLILLLKEINS---KKEISFPK----NIDFIFIGTKSDL-YSTYTEEYD----------H 341
            L++ + +++S   K +  F      N   +F+  K DL  +  TEE+            
Sbjct: 303 SLVIYVIDVSSNLTKDDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSKVLNSSNLI 362

Query: 342 LISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
           +IS+   EG++ L +KI++++S +     L   I S  R +  L +     L++ S  ++
Sbjct: 363 MISTKNLEGIDILYDKIRALISYERVEIGLDDIIISSNRQMQLLEKAYALILDLLSKIDR 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 423 QVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|30468066|ref|NP_848953.1| tRNA modification GTPase [Cyanidioschyzon merolae strain 10D]
 gi|75272287|sp|Q85FG3|MNME_CYAME RecName: Full=Probable tRNA modification GTPase mnmE
 gi|30409166|dbj|BAC76115.1| tRNA modification GTPase [Cyanidioschyzon merolae strain 10D]
          Length = 446

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 128/447 (28%), Positives = 227/447 (50%), Gaps = 20/447 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDK 63
           ++TI A++T   PS+++IIRLSG    ++ + IC KK  +   +    Y      +++D+
Sbjct: 9   QDTIVAIATYLAPSSVAIIRLSGNEAIRLAKSICVKKNHWHSHRIIHTYVQDDQNQLIDE 68

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            L++   +P S+T +D  E H HGG+ V   IL+ L      RLA PGEF+ RAF NG++
Sbjct: 69  VLVLPMLAPRSYTRQDVVEIHAHGGVVVAQTILQLLINR-GARLAKPGEFTLRAFINGRL 127

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
            L +AES+ +LI + +    + ++  + G LS+   Q   +L  + + IEA LDF  +  
Sbjct: 128 TLTQAESVLELIHAPSVAMAKKALSNLRGALSTQLHQVRSELIQLLAQIEAHLDFDLDN- 186

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
              F     +N +  + N I + ++     +  R G ++ +LG +NAGKS+LFNAL  ++
Sbjct: 187 --TFVFNSFINSLTNIINQIQNLLNTP--SKFYRYGIQVALLGPANAGKSTLFNALIGEE 242

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +IVT I GTT DV+   L  +    +  DTAG++E    +E + + +     +  DLIL
Sbjct: 243 RSIVTPIAGTTTDVVEATLQWQQICFRFFDTAGLKEASSEIETKAMAKAQQIAKQCDLIL 302

Query: 304 LLKEINSKK---EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL----IN 356
            + +  S           +   + +  K D+ S+   ++    +S+    +  L    ++
Sbjct: 303 WIIDATSPNLPIPPYLLNSKPLLVVYNKIDVDSSDVLDHVLDHTSYPTVKVSALYATNLS 362

Query: 357 KIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLAS 413
           ++K ++  +  +L     I  ++R    L Q  ++L  + S  ++   L+II+ +L+ A 
Sbjct: 363 QLKQLIWQQATQLFQLDGIYINERQSQLLQQAKQHLCNLQSALDEGYPLEIISWHLKNAI 422

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L +          L+ IFS+FCIGK
Sbjct: 423 QCLDE---NDVNASTLNAIFSQFCIGK 446


>gi|325095034|gb|EGC48344.1| tRNA modification GTPase GTPBP3 [Ajellomyces capsulatus H88]
          Length = 615

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 157/543 (28%), Positives = 252/543 (46%), Gaps = 116/543 (21%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLD-----GRI 60
           TI+A+ST    +AI+I+R+SGP+C Q+ + +C K+  P PR A+LR  +          I
Sbjct: 63  TIYALSTAPGRAAIAIVRVSGPACVQIYDALCPKRPLPNPRVAALRTLYDPSVPPSVNTI 122

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL-----------RLAN 109
           LD+ +++ FP+P + TGED  E H+HGG AVV  +L  + +               R A 
Sbjct: 123 LDRAVVLHFPAPNTVTGEDVLELHIHGGPAVVKAVLNAIPRCAGAFSNEKIAMPSVRYAE 182

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G SG L+  Y +W  +L + R
Sbjct: 183 PGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERWRQQLLYAR 242

Query: 170 SFIEADLDFSEEEDVQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
             +EA +DFSE++       +    +  ++  L   I+ HI     GE++R+G ++ +LG
Sbjct: 243 GEMEALIDFSEDQHFDESIEEFVSSITGEVRNLVRQINLHIENASKGELLRSGIRVALLG 302

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD----- 281
             NAGKSSL N +  ++ AIV+   GTTRD++ + +D+ GY  K  D AG+R        
Sbjct: 303 APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGYFCKFGDMAGLRSGHIARSG 362

Query: 282 ----DIVEKEGIKRTFLEVENADLILLLKEINSKKE-------------------ISFPK 318
                 VE+EGI+R       +D+++++  +                        I+  K
Sbjct: 363 SMPIGAVEQEGIRRAKARALESDVVIVVLSLEESDNGTGVKLVLEPEVVDAVRSCIALEK 422

Query: 319 NIDFIFIGTKSD--------------LYSTYTEEYDHLISSFTGEGL------------- 351
           ++       K D              L  + TEE   +    T + +             
Sbjct: 423 HMIVAV--NKFDKYSPTTYTARTQQKLVDSLTEEISSVEPRLTQDQIFLISCREVENEVS 480

Query: 352 ------------EELINKIKSI-----LSNKFKKL-----PFSIPSHKRHLYHLSQTVRY 389
                        ELI   K +     L N  ++        S+    R   +L + V++
Sbjct: 481 QEAEPGNIQKFLGELIRTFKRMSTPSELDNGNEQFDKLYWEDSLGVTHRQRSNLQKCVQH 540

Query: 390 L------------EMASLNEKDCGLDII--AENLRLASVSLGKITGC---VDVEQLLDII 432
           L              A+  + +   DI+  AE+LR A+  L KITG     DVE +L ++
Sbjct: 541 LNDFLSQTCQTPDNAANAEQIEVNFDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVV 600

Query: 433 FSK 435
           F K
Sbjct: 601 FEK 603


>gi|240277090|gb|EER40600.1| tRNA modification GTPase GTPBP3 [Ajellomyces capsulatus H143]
          Length = 615

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 157/543 (28%), Positives = 252/543 (46%), Gaps = 116/543 (21%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLD-----GRI 60
           TI+A+ST    +AI+I+R+SGP+C Q+ + +C K+  P PR A+LR  +          I
Sbjct: 63  TIYALSTAPGRAAIAIVRVSGPACVQIYDALCPKRPLPNPRVAALRTLYDPSVPPSVNTI 122

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL-----------RLAN 109
           LD+ +++ FP+P + TGED  E H+HGG AVV  +L  + +               R A 
Sbjct: 123 LDRAVVLHFPAPNTVTGEDVLELHIHGGPAVVKAVLNAIPRCAGAFSNEKIAMPSVRYAE 182

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G SG L+  Y +W  +L + R
Sbjct: 183 PGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERWRQQLLYAR 242

Query: 170 SFIEADLDFSEEEDVQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
             +EA +DFSE++       +    +  ++  L   I+ HI     GE++R+G ++ +LG
Sbjct: 243 GEMEALIDFSEDQHFDESIEEFVSSITGEVRNLVRQINLHIENASKGELLRSGIRVALLG 302

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD----- 281
             NAGKSSL N +  ++ AIV+   GTTRD++ + +D+ GY  K  D AG+R        
Sbjct: 303 APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGYFCKFGDMAGLRSGHIARSG 362

Query: 282 ----DIVEKEGIKRTFLEVENADLILLLKEINSKKE-------------------ISFPK 318
                 VE+EGI+R       +D+++++  +                        I+  K
Sbjct: 363 SMPIGAVEQEGIRRAKARALESDVVIVVLSLEESDNGTGVKLVLEPEVVDAVRSCIALEK 422

Query: 319 NIDFIFIGTKSD--------------LYSTYTEEYDHLISSFTGEGL------------- 351
           ++       K D              L  + TEE   +    T + +             
Sbjct: 423 HMIVAV--NKFDKYSPTTYTARTQQKLVDSLTEEISSVEPRLTQDQIFLISCREVENEVS 480

Query: 352 ------------EELINKIKSI-----LSNKFKKL-----PFSIPSHKRHLYHLSQTVRY 389
                        ELI   K +     L N  ++        S+    R   +L + V++
Sbjct: 481 QEADPGNIQKFLGELIRTFKRMSTPSELDNGNEQFDKLYWEDSLGVTHRQRSNLQKCVQH 540

Query: 390 L------------EMASLNEKDCGLDII--AENLRLASVSLGKITGC---VDVEQLLDII 432
           L              A+  + +   DI+  AE+LR A+  L KITG     DVE +L ++
Sbjct: 541 LNDFLSQTCQTPDNAANAEQIEVNFDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVV 600

Query: 433 FSK 435
           F K
Sbjct: 601 FEK 603


>gi|312148439|gb|ADQ31098.1| tRNA modification GTPase TrmE [Borrelia burgdorferi JD1]
          Length = 464

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 138/462 (29%), Positives = 237/462 (51%), Gaps = 31/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGR--- 59
            + I A++T  L SA+ +IR SG S       I          +  ++ Y + LD     
Sbjct: 8   DDDIVALATPFLSSALCVIRSSGASSISKFSKIFSNHSALNSASGNTIHYGYILDNENDC 67

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ ++ ++ +P+SFTG+D+ E   HG +  +  I++ L      R+A PGEF+ RAF 
Sbjct: 68  KVDEVVVCLYRAPKSFTGQDTIEVMAHGSVIGIKKIID-LFLKSGFRMAEPGEFTLRAFL 126

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
             KIDL +AE++ ++I ++T     L++  +SG L          + +  S +   LD+ 
Sbjct: 127 AKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGALFVKIDAIKKSILNFLSAVSVYLDYE 186

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            ++   +     +L+     K ++   I+  K+ E I NG  +V+ G  NAGKSSLFN  
Sbjct: 187 VDDHEISIPFDLILSS----KAELKKLINSYKVYEKIDNGVALVLAGSVNAGKSSLFNLF 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++   ++ A
Sbjct: 243 LKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNSLIKEA 302

Query: 300 DLILLLKEINS---KKEISFPK----NIDFIFIGTKSDL-YSTYTEEYD----------H 341
            L++ + +++S   K +  F      N   +F+  K DL  +  TEE+            
Sbjct: 303 SLVIYVIDVSSNLTKDDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSKVLNSSNLI 362

Query: 342 LISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
           +IS+   EG++ L +KI++++S +     L   I S  R +  L +     L++ S  ++
Sbjct: 363 MISTKNLEGIDILYDKIRALISYERVEIGLDDIIISSSRQMQLLEKAYALILDLLSKIDR 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 423 QVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|119952977|ref|YP_945186.1| tRNA modification GTPase TrmE [Borrelia turicatae 91E135]
 gi|254811472|sp|A1QYX4|MNME_BORT9 RecName: Full=tRNA modification GTPase mnmE
 gi|119861748|gb|AAX17516.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Borrelia turicatae 91E135]
          Length = 464

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 227/464 (48%), Gaps = 31/464 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGLDGRI 60
             ++ I A++T  L SA+ +IR SG S  +    +    K+       ++ Y + +D  I
Sbjct: 6   QREDDIVALATPLLSSALCVIRSSGISSIEKFSKMFSDPKRLLEASGHTIHYGYLIDKEI 65

Query: 61  ---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              LD+ ++ ++ +P+SFTG++S E   HG    +  I+    K+   R+A PGEF+ RA
Sbjct: 66  CEKLDEVVVCIYRAPKSFTGQNSIEVMAHGSPIGIKRIIGCFLKV-GFRMAEPGEFTLRA 124

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F  GK+DL +AE++ +LIS++T     L++  +SG L +        + +  S +   LD
Sbjct: 125 FLAGKLDLTKAEAVNELISAKTNKTHSLAVNKLSGSLFAKIDLIKKDILNFLSALSVHLD 184

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +   E       + +       ++++   +        +  G  +V+ G  N GKSSLFN
Sbjct: 185 YETSEYEVAIPFEIISKS----RDELKRLVDSYNTARKLDYGIALVLAGSVNVGKSSLFN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K+D AIV+   GTTRD +    + +G L  + DTAG+RET D VE+ GI ++   ++
Sbjct: 241 LLLKEDRAIVSSYAGTTRDYIQASFEFDGILFNVFDTAGLRETTDFVEQLGIVKSNSLIK 300

Query: 298 NADLILLLKEINSK---KEISFPK----NIDFIFIGTKSDLYS-----------TYTEEY 339
            A L+L + +++++    ++ F      +   IF+  K DL                   
Sbjct: 301 EASLVLYVIDLSARLTNDDLKFIDSYKGHSKVIFVLNKMDLEPNRQTVEFFNSGNINSSN 360

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVRY-LEMASLN 396
              IS+ T  G++ L +KI+S+    +  +     I S  R    L +     +E+ +  
Sbjct: 361 LVKISTKTLFGIDSLYDKIRSLTCFDYIDIDAYDVIVSSSRQAELLKKAYTLIIELLNKI 420

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           EKD   D++A ++      LG+ITG V  E +L+ +F  FC+GK
Sbjct: 421 EKDISYDMLAFDVYEVLNFLGEITGEVTSEDVLNNMFKNFCLGK 464


>gi|313892276|ref|ZP_07825869.1| tRNA modification GTPase TrmE [Dialister microaerophilus UPII
           345-E]
 gi|313119414|gb|EFR42613.1| tRNA modification GTPase TrmE [Dialister microaerophilus UPII
           345-E]
          Length = 459

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 127/433 (29%), Positives = 223/433 (51%), Gaps = 24/433 (5%)

Query: 30  CFQVCEFIC--KKKKPFPRKASLRYFFGL---DGRILDKGLLIVFPSPESFTGEDSAEFH 84
              + E +   KK   F      + +FG    D + +D+GL +   +P S+TGED  E  
Sbjct: 29  ACDIAERVFYTKKLNTFKDAIPYKMYFGYVKRDEKKIDEGLAVYMKAPHSYTGEDVVEIQ 88

Query: 85  VHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRR 144
           +HG    +   LE L       +A  GEF++RAF NG++DL +AE++ D+I ++  +   
Sbjct: 89  IHGSQEALRQTLE-LVLEKGATIAERGEFTKRAFLNGRLDLTQAEAVMDIIEAKNAVALT 147

Query: 145 LSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS 204
            +   +SG LS    +  +K+  + + +E  +D+ + ED+++ +  E+  ++  ++  + 
Sbjct: 148 QAESHLSGALSKFVHENREKMKDLITKLEVTIDYPD-EDLKDLTRHEMETELSEIEKTLY 206

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           + +   K G II++G +  I+G  NAGKSSL N L +++ AIVTDIPGTTRD +   + L
Sbjct: 207 ALLETSKKGRIIKDGIRTAIVGKPNAGKSSLLNTLLQEERAIVTDIPGTTRDTIEESISL 266

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------ 318
            G  + + DTAGIR+T++ VEK GI+R    +E ADL+L++ + + + E S  K      
Sbjct: 267 SGIPLILMDTAGIRKTENKVEKIGIERARESMEKADLVLMVIDSSKELEESDKKLLEEIS 326

Query: 319 NIDFIFIGTKSDLYSTYTEE---------YDHLISSFTGEGLEELINKIKSILS-NKFKK 368
               + +  KSDL    T+E             IS+    G+ +L   ++  +     + 
Sbjct: 327 KRKAVVLLNKSDLEKKTTKETVSKYAKDLPVLEISAKNKTGMNKLEKVLEDYVKTGDIED 386

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASVSLGKITGCVDVEQ 427
                 ++ RH+  + +    +  A  + +     D I  +L  +   LG+ITG    ++
Sbjct: 387 GRALFLTNLRHIDLVKKAYESVIRAKESLQLYMPADCIVVDLTESWNILGEITGDTVDDE 446

Query: 428 LLDIIFSKFCIGK 440
           L++ IFS+FC+GK
Sbjct: 447 LINSIFSRFCVGK 459


>gi|225549804|ref|ZP_03770768.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 118a]
 gi|225369612|gb|EEG99061.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 118a]
          Length = 464

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 136/462 (29%), Positives = 236/462 (51%), Gaps = 31/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
            + I A++T  L SA+ +IR SG S       I          +     +G      +G 
Sbjct: 8   DDDIVALATPFLSSALCVIRSSGASSISKFSKIFSNHSALNSASGNTIHYGYILDSENGC 67

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ ++ ++ +P+SFTG+D+ E   HG +  +  I++ L      R+A PGEF+ RAF 
Sbjct: 68  KVDEVVVCLYRAPKSFTGQDAIEVMAHGSVIGIKKIID-LFLKSGFRMAEPGEFTLRAFL 126

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
             KIDL +AE++ ++I ++T     L++  +SG L          + +  S +   LD+ 
Sbjct: 127 AKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGALFVKIDAIKKSILNFLSAVSVYLDYE 186

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            ++   +     +L+     K ++   I+  K+ E I NG  +V+ G  NAGKSSLFN  
Sbjct: 187 VDDHEISIPFDLILSS----KAELKKLINSYKVYEKIDNGVALVLAGSVNAGKSSLFNLF 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++   ++ A
Sbjct: 243 LKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNSLIKEA 302

Query: 300 DLILLLKEINS---KKEISFPK----NIDFIFIGTKSDL-YSTYTEEYD----------H 341
            L++ + +++S   K +  F      N   +F+  K DL  +  TEE+            
Sbjct: 303 SLVIYVIDVSSNLTKDDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSKVLNSSNLI 362

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKL--PFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
           +IS+   EG++ L +KI++++S +  ++     I S  R +  L +     L++ S  ++
Sbjct: 363 MISTKNLEGIDILYDKIRALISYERVEIGVDDIIISSSRQMQLLEKAYALILDLLSKIDR 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 423 QVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|222823559|ref|YP_002575133.1| tRNA modification GTPase, TrmE [Campylobacter lari RM2100]
 gi|222538781|gb|ACM63882.1| tRNA modification GTPase, TrmE [Campylobacter lari RM2100]
          Length = 442

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 230/448 (51%), Gaps = 19/448 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISIIR+SG    +      +K+K  PR A L   +  +   LD+ 
Sbjct: 2   NDTIAAIATAHGVGSISIIRVSGDQALEFALKFTRKEKLTPRYAHLCKIYKNNDDFLDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+I F +P SFTGED  EF +HGG ++   +L+EL      RLANPGEFS+RA  NGK+D
Sbjct: 62  LVIYFKAPYSFTGEDIVEFQLHGGFSLSEILLDELVLA-GARLANPGEFSKRACLNGKMD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           LL+A S+ D I S++     +  + + G+LS         L    +F+E  +D+++++  
Sbjct: 121 LLKALSIQDAIMSKSACAANIIAKNIKGDLSKFLNTIRIDLVQTLAFVETSIDYADDDLP 180

Query: 185 QNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           Q+   +   +      L  DI   IS  K G  +  G+K+ I+G  NAGKSSL N+L   
Sbjct: 181 QDLLDQIITMCEKNSKLLRDIVD-ISLSKKG--LIEGFKVAIIGKPNAGKSSLLNSLLAF 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIV+DI GTTRD +   L +  +L+KI DTAGIR  DD +EK G+  ++  ++ AD+I
Sbjct: 238 DRAIVSDIAGTTRDRIEESLKIGSHLIKIIDTAGIRNADDEIEKIGVHLSYESIKEADII 297

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           +++ + + + E    +        +   I++  KSDL + +  E          +   E 
Sbjct: 298 IVVFDGSKEFEEEDERILQALKDCDKKIIYVLNKSDLTTKFEHEISTSCIRICAQ---EN 354

Query: 355 INKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
              IK  L+     L     + S+   L         +  A    K+  L++ A  L LA
Sbjct: 355 TQAIKENLNEYLNTLDGDGMLISNTLILNACKNASEAILRARDLLKESSLELFAFELNLA 414

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              + + T   + +++LD +FS FC+GK
Sbjct: 415 IGEIAQFTKDFERDEILDAMFSNFCLGK 442


>gi|203284100|ref|YP_002221840.1| thiophene and furan oxidation protein [Borrelia duttonii Ly]
 gi|226704780|sp|B5RL05|MNME_BORDL RecName: Full=tRNA modification GTPase mnmE
 gi|201083543|gb|ACH93134.1| thiophene and furan oxidation protein [Borrelia duttonii Ly]
          Length = 464

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 228/464 (49%), Gaps = 31/464 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGLDGRI 60
            +++ I A++T    SA+ +IR SG S  +    +     K       ++ Y + LD   
Sbjct: 6   QKEDDIVALATPFFSSALCVIRSSGVSAIEKFSKMFSDPSKLLEASGHTIHYGYILDNET 65

Query: 61  ---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              LD+ ++ ++ +P+SFTG+DS E   HG +  +  I++   K+   R+A PGEF+ R+
Sbjct: 66  KEKLDEVVVCLYRAPKSFTGQDSIEVMAHGSLIGIRRIIDFFLKV-GFRMAEPGEFTLRS 124

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F  GK+DL +AE++ +LIS++T     L++  +SG L          + +  S I   LD
Sbjct: 125 FLAGKLDLTKAEAINELISAKTRQVHALAVNKLSGSLFDKIDLIKKDILNFLSAISVYLD 184

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +  +++        +L      K+++   I        + NG  +V+ G  N GKSSLFN
Sbjct: 185 YETDDNEVVIPVDIILKS----KSELERLIDSYDTARKLENGVTLVLAGSVNVGKSSLFN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K+D AIV+   GTTRD +    + +G L  + DTAG+RET D VE+ GI R+   ++
Sbjct: 241 LLLKEDRAIVSSYAGTTRDYIQASFEFDGILFNVFDTAGLRETSDFVEQLGIVRSNSLIK 300

Query: 298 NADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYS-----------TYTEEY 339
            A LI  + +++ K          ++ ++   +F+  K DL                   
Sbjct: 301 EASLIFYVVDLSGKLTDDDLKFIDAYKEDSRVLFVLNKVDLEQNNQTVEFFNSNNVVSLN 360

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVRY-LEMASLN 396
              IS+ T  G+  L ++I+S+++  + K      + S  R    L +     +E+ S  
Sbjct: 361 TVKISTKTLFGINSLYDRIRSLIAVDYMKTSDYDVVISSTRQAELLKRAYALIIELLSKI 420

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E++   D++A ++      LG+ITG V  + +LD +F  FC+GK
Sbjct: 421 EQNISYDMLAFDVYEVVNVLGEITGEVTSDDVLDNMFKNFCLGK 464


>gi|42527683|ref|NP_972781.1| tRNA modification GTPase TrmE [Treponema denticola ATCC 35405]
 gi|81831356|sp|Q73KN7|MNME_TREDE RecName: Full=tRNA modification GTPase mnmE
 gi|41818511|gb|AAS12700.1| tRNA modification GTPase TrmE [Treponema denticola ATCC 35405]
          Length = 472

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 158/466 (33%), Positives = 232/466 (49%), Gaps = 34/466 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60
           + I A++T   P+A+ I+R SG     +   I  K K            G        + 
Sbjct: 10  DPIAAIATALSPAALGIVRTSGEGAIDLASAIFSKPKKLKEAQGNSILHGWVLDPESKKE 69

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+  + V+  P+SFTGEDS EF  HGG AVV  I   L +    R A  GEF+ RAF N
Sbjct: 70  VDEVTVCVYREPKSFTGEDSVEFICHGGTAVVLKIYRLLIE-NGFRAAEGGEFTFRAFAN 128

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK DL  AE++ ++I+S+T++   L+   +SG L S   +   +LT + +  + ++++ E
Sbjct: 129 GKADLTRAEAVNEIINSKTDINIELAAGRLSGNLFSGIEEIKHELTAVIAAADVEIEYPE 188

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +E+    +    L  IL +   +          +I   G K+V+ G +NAGKSSLFNAL 
Sbjct: 189 DEETSQGAFSPDL--ILRIIEPLKDLADSWAAEKIFIQGAKVVLAGKTNAGKSSLFNALL 246

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K+D AIV+DI GTTRD L   L+  G  V + DTAGIR T D +E  G++R+     NAD
Sbjct: 247 KEDRAIVSDIHGTTRDWLEASLNFNGIPVSLYDTAGIRYTQDSIEAIGVERSLEMSRNAD 306

Query: 301 LILLLKEINS--------KKEISFPKN--IDFIFIGTKSDLYSTYTEEY----------- 339
           LIL L +           K +  F KN     I + TK DL  T ++E            
Sbjct: 307 LILYLCDPKDILSAGSLNKDDSEFIKNAKAPVITVITKEDLLDTESKEKIKEILKAEKIA 366

Query: 340 -DHLISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASL 395
              +ISS    G++ L  K  S+L+       FS       +R    + + +  L+ A  
Sbjct: 367 EPIIISSKASNGIKALSEKAYSVLAKNTGSSGFSKTASLGSERQRDAVQKALDVLQTAYQ 426

Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           N  +   LD+I E+L  A   LG+ITG V  + +LD +FS FC+GK
Sbjct: 427 NSLEGFPLDLIVEDLEEALSFLGEITGEVRSDDILDKVFSGFCVGK 472


>gi|256383901|gb|ACU78471.1| tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256384732|gb|ACU79301.1| tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455373|gb|ADH21608.1| tRNA modification GTPase TrmE [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 452

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 134/450 (29%), Positives = 239/450 (53%), Gaps = 15/450 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +T+ A +T     AI++IR+SG   F +   + K KK   ++         +  ++D+ 
Sbjct: 4   NDTVVAPATNISTQAIALIRVSGSEAFLIVNKLIKDKKLEEKRGLFLRKLYFENELIDEV 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +L  F +P SFTGE+  E   HGGI   N I+  L +    R+A  GEFS+R+F NGKID
Sbjct: 64  VLSCFVAPNSFTGENVVEIACHGGILNTNKIINILIQS-GARMALRGEFSQRSFLNGKID 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++AE + +LI ++ ++  ++ +  MSG  +    +  D L  I S I+  +D+ + +DV
Sbjct: 123 LIQAEGINNLIHAKNDLALKIGVANMSGSNNKAIIELKDNLLDIISRIQVSIDYPDYDDV 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  S +++ N +  + + I+  + + K+      G K  I+G +N GKSS+ NAL  +D 
Sbjct: 183 EGSSIEDLTNLLEVINDQINKLLMRSKMAFKNSEGIKTAIIGQTNVGKSSILNALINEDK 242

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRD++   ++LE   + + DTAGIR+T D+VE  GI ++   +  ADL+L 
Sbjct: 243 AIVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLF 302

Query: 305 LK------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY------DHLISSFTGEGLE 352
           +       + ++++     K+  +I I  K++  S   ++       + + +S     ++
Sbjct: 303 VVNKENINDSDNQEIFELLKDKTYILIVNKAEKLSQTEKQNLEKKYENIVFTSAINHDID 362

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLR 410
           +L+ +I  + L+ +  K    I      +  + Q    L  A S+ +    +DI+  +L 
Sbjct: 363 QLVLRINQMFLNEEISKNDELILIGLNQITLVEQIKNKLSTALSVIKSGMPIDIVNVDLY 422

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A   L ++ G    ++++D IF K+C+GK
Sbjct: 423 DAWNLLNELIGVEYEDEIIDNIFRKYCLGK 452


>gi|83319722|ref|YP_424766.1| tRNA modification GTPase TrmE [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|123535480|sp|Q2SR47|MNME_MYCCT RecName: Full=tRNA modification GTPase mnmE
 gi|83283608|gb|ABC01540.1| tRNA modification GTPase TrmE [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 452

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 134/450 (29%), Positives = 240/450 (53%), Gaps = 15/450 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +T+ A +T     AI++IR+SG   F +   + K KK   ++         +  ++D+ 
Sbjct: 4   NDTVVAPATNISTQAIALIRVSGSEAFLIVNKLIKDKKLEEKRGLFLRKLYFEDELIDEV 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +L  F +P SFTGE+  E   HGGI   N I+  L +    R+A  GEFS+R+F NGKID
Sbjct: 64  VLSCFVAPNSFTGENVVEIACHGGILNTNKIINILIQS-GARMALRGEFSQRSFLNGKID 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L++AE + +LI ++ ++  ++ +  MSG  +    +  D L  I S I+  +D+ + +DV
Sbjct: 123 LIQAEGINNLIHAKNDLALKIGVANMSGSNNKAIIELKDNLLDIISRIQVSIDYPDYDDV 182

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  S +++ N +  + + I+  + + K+      G K  I+G +N GKSS+ NAL  +D 
Sbjct: 183 EGSSIEDLTNLLEIINDQINKLLMRSKMAFKNSEGIKTAIVGQTNVGKSSILNALINEDK 242

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDIPGTTRD++   ++LE   + + DTAGIR+T D+VE  GI ++   +  ADL+L 
Sbjct: 243 AIVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLF 302

Query: 305 LK------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY------DHLISSFTGEGLE 352
           +       ++++++     K+  +I I  K++  S   ++       + + +S     ++
Sbjct: 303 VVNKENINDLDNQEIFELLKDKTYILIVNKAEKLSQTEKQNLEKKYENIVFTSAINHDID 362

Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLR 410
           +L+ +I  + L+ +  K    I      +  + Q    L  A S+ +    +DI+  +L 
Sbjct: 363 QLVLRINQMYLNEEISKSDELILIGLNQITLVEQIKNKLSTALSVIKSGMPIDIVNVDLY 422

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A   L ++ G    ++++D IF K+C+GK
Sbjct: 423 DAWNLLNELIGVEYEDEIIDNIFRKYCLGK 452


>gi|329121701|ref|ZP_08250318.1| tRNA modification GTPase TrmE [Dialister micraerophilus DSM 19965]
 gi|327468171|gb|EGF13657.1| tRNA modification GTPase TrmE [Dialister micraerophilus DSM 19965]
          Length = 459

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 128/433 (29%), Positives = 222/433 (51%), Gaps = 24/433 (5%)

Query: 30  CFQVCEFIC--KKKKPFPRKASLRYFFGL---DGRILDKGLLIVFPSPESFTGEDSAEFH 84
              + E +   KK   F      + +FG    D   +D+GL +   +P S+TGED  E  
Sbjct: 29  ACDIAERVFYTKKLNTFKDAIPYKMYFGYVKRDETKIDEGLAVYMKAPHSYTGEDVVEIQ 88

Query: 85  VHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRR 144
           +HG    +   LE L       +A  GEF++RAF NG++DL +AE++ D+I ++  +   
Sbjct: 89  IHGSQEALRQTLE-LVLEKGATIAERGEFTKRAFLNGRLDLTQAEAVMDIIEAKNAVALT 147

Query: 145 LSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS 204
            +   +SG LS    +  +K+  + + +E  +D+ + ED+++ +  E+  ++  ++  + 
Sbjct: 148 QAESHLSGALSKFVHENREKMKDLITKLEVTIDYPD-EDLKDLTRHEMETELSEIEKTLY 206

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           S +   K G II++G +  I+G  NAGKSSL N L +++ AIVTDIPGTTRD +   + L
Sbjct: 207 SLLETSKKGRIIKDGIRTAIVGKPNAGKSSLLNTLLQEERAIVTDIPGTTRDTIEESISL 266

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------ 318
            G  + + DTAGIR+T++ VEK GI+R    +E ADL+L++ + + + E S  K      
Sbjct: 267 SGIPLILMDTAGIRKTENKVEKIGIERARESMEKADLVLMVIDSSKELEESDKKLLEEIS 326

Query: 319 NIDFIFIGTKSDLYSTYTEE---------YDHLISSFTGEGLEELINKIKSILS-NKFKK 368
               + +  KSDL    T+E             IS+    G+ +L   ++  +     + 
Sbjct: 327 KRKAVVLLNKSDLEKKTTKETVSKYAKDLPVLEISAKNKTGMNKLEKVLEDYVKTGDIED 386

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASVSLGKITGCVDVEQ 427
                 ++ RH+  + +    +  A  + +     D I  +L  +   LG+ITG    ++
Sbjct: 387 GRALFLTNLRHIDLVKKAYESVIRAKESLQLYMPADCIVVDLTESWNILGEITGDTVDDE 446

Query: 428 LLDIIFSKFCIGK 440
           L++ IFS+FC+GK
Sbjct: 447 LINSIFSRFCVGK 459


>gi|268610510|ref|ZP_06144237.1| putative tRNA modification GTPase [Ruminococcus flavefaciens FD-1]
          Length = 453

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 132/453 (29%), Positives = 228/453 (50%), Gaps = 21/453 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDG-RIL 61
           TI AVST      +++IR+SG    ++ E + +    +K    +  +  Y    DG   +
Sbjct: 3   TIAAVSTPNAVGGLAVIRISGERAIEIAEAVFRPAGGRKVSDMKGYTCAYGDAYDGDEHI 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D  +L VF +P S+TGED+AE   HGG+ V   IL  +        A  GEF++RAF NG
Sbjct: 63  DDCILTVFRAPHSYTGEDTAEISCHGGLYVSKKILRAIL-AHGAENAEAGEFTKRAFLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE++ D+IS+  E + +++     G       +  DKL  I   + A  D+ E 
Sbjct: 122 KLDLTQAEAVMDIISARGEKELKMAESLREGAAYRTARKCSDKLMKILGDLAAWADYPE- 180

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+       ++ ++  +++D+S+ +     G +IR G    I+G  N GKS+LFN L+ 
Sbjct: 181 EDIPEVEPDTLMKELREVRSDLSTLVENYDSGRLIREGISTAIIGRPNVGKSTLFNCLSG 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            + +IVTDI GTTRD++   + L    +++SDTAGI +TDD++E  G+      ++ A+L
Sbjct: 241 CERSIVTDIAGTTRDIVEESVRLGDITLRLSDTAGIHDTDDVIEGIGVDMAEKMIDKAEL 300

Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE-------YDHLISSFTG 348
           +L + + +          ++     + I +  KSD+              +   IS+   
Sbjct: 301 VLAVFDGSCPLTEDDLYLVNKINKSNTIAVINKSDVEQKLDINELTKYFIHIVYISAKEN 360

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAE 407
            G+ +L NK++ I S   +       +++R    +   +R ++ A S  E    LD +  
Sbjct: 361 SGVIDLKNKVEEIFSINEQTFENVSAANERQKKCIDSALRSIDEAISALEIGEMLDAVNV 420

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  A  S+  +TG    + ++D +FS+FC+GK
Sbjct: 421 IIDEAEQSILSLTGEKITDAVVDEVFSRFCVGK 453


>gi|315638574|ref|ZP_07893748.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis JV21]
 gi|315481198|gb|EFU71828.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis JV21]
          Length = 442

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 231/447 (51%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISIIR+SG    ++   +  K +  PR A     F  +   +D+ 
Sbjct: 2   NDTIAALATAYGTGSISIIRVSGSRALELGLKLSHKDELSPRYAYFVKLFNDENVFIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGED  EF +HGG +V   +L+EL K  ++RLA  GEFS+RA  NGK+ 
Sbjct: 62  IMIYFKAPFSFTGEDVVEFQIHGGFSVSEILLDELLK-NDVRLAKAGEFSKRACLNGKMS 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L+A ++ DLIS+++    ++    M G L++L  +    L    +F+E  +D+++++  
Sbjct: 121 ALKALNIQDLISAKSAKSAKIIARNMQGTLANLIEKIRLDLIKSLAFVETSIDYADDDLP 180

Query: 185 QNFS--SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +     + +  +   +  +I +     +  + +  G+KI I+G  NAGKSSL NAL   
Sbjct: 181 SDLMEQIRMMCEENARILEEIYTL---SQSKKALLEGFKIAIIGKPNAGKSSLLNALLAY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+ + GTTRD +   L +  +LVKI DTAGIRE+++ +EK GI+ +   +  AD+I
Sbjct: 238 ERAIVSPLAGTTRDFIEESLKIGTHLVKIMDTAGIRESEEELEKIGIELSKKSLNEADII 297

Query: 303 LLLKEIN------SKKEISFPKN--IDFIFIGTKSDLYSTYTEEYDHLISSFT-GEGLEE 353
           L L + +       K+ ++  KN      ++  K DL   +    +  +   +  E +  
Sbjct: 298 LALFDSSREFDEEDKEILNLLKNSEKKVFYLLNKCDLKPQFENLNEIDLIKISAKEDIMP 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L   ++S L+         + S    +    +    ++ A     +  L++ A  L +A 
Sbjct: 358 LKKALESYLN--SLDSEGFLVSSLDFINACKKASEAIQRAKTLLDERVLELFAFELNVAI 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L K T     E++LD +FS FC+GK
Sbjct: 416 EELAKFTKDFKREEILDEMFSNFCLGK 442


>gi|219684548|ref|ZP_03539491.1| tRNA modification GTPase TrmE [Borrelia garinii PBr]
 gi|219671910|gb|EED28964.1| tRNA modification GTPase TrmE [Borrelia garinii PBr]
          Length = 464

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 237/462 (51%), Gaps = 31/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGR--- 59
            + I A++T  L SA+ +IR SG S       I             ++ Y + LD     
Sbjct: 8   DDDIVALATPFLSSALCVIRSSGASSISKFSKIFSNHSALNSAPGNTIHYGYILDNENNC 67

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ ++ ++ +P+SFTG+DS E   HG +  +  I++ L      R+A PGEF+ R+F 
Sbjct: 68  KVDEVVVCLYRAPKSFTGQDSIEVIAHGSVIGIKKIID-LFLKSGFRMAEPGEFTLRSFF 126

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
             KIDL +AE++ ++I ++T     L++  +SG L          + +  S +   LD+ 
Sbjct: 127 AKKIDLTKAEAINEIIFAKTNKTYSLAVNKLSGALFVKIDAIKGCILNFLSAVSVYLDYE 186

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            ++   +     +LN     K ++   I+  K+ E I +G  +V+ G  NAGKSSLFN  
Sbjct: 187 VDDHEISIPFDLILNS----KAELKKLINSYKVYEKIDHGVTLVLAGSVNAGKSSLFNMF 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++   ++ A
Sbjct: 243 LKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNSLIKEA 302

Query: 300 DLILLLKEINS---KKEISFPK----NIDFIFIGTKSDL-YSTYTEEYD----------H 341
            L++ + +++S   +++  F      N   +F+  K DL  +  TEE+            
Sbjct: 303 SLVIYVIDVSSNLTREDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSSVLNSSNLI 362

Query: 342 LISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
           +IS+   EG++ L +KIK+++S +     L   I S  R +  L +     L++ +  ++
Sbjct: 363 MISTKNLEGIDILYDKIKTLISYEKVEIGLDDIIISSSRQMQLLEKAYALVLDLLNKIDR 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 423 QVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|323336238|gb|EGA77509.1| Mss1p [Saccharomyces cerevisiae Vin13]
          Length = 526

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 166/494 (33%), Positives = 252/494 (51%), Gaps = 55/494 (11%)

Query: 2   NHEKETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDGR 59
             ++ TI+A+ST A   SAI+IIR+SG     +   +       P RKA LR  +     
Sbjct: 33  TFQQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSC 92

Query: 60  ------------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--- 104
                       +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  + +   
Sbjct: 93  SVKPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSS 152

Query: 105 ---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQW 161
              +R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W
Sbjct: 153 GKDIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENW 212

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF----LKNDISSHISQGKLGEIIR 217
            + +    + + A +DF+++   +  ++ E+ +B+      L++ I + + + +   I++
Sbjct: 213 RETIIENMAQLTAIIDFADDNSQEIQNTDEIFHBVEKNIICLRDQIVTFMQKVEKSTILQ 272

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAGI
Sbjct: 273 NGIKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGI 332

Query: 278 RET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----------NIDFIFI 325
           RE   D +E  GI R   +   +DL L + +     ++               N   I +
Sbjct: 333 REKSSDKIEMLGIXRAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIV 392

Query: 326 GTKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             KSDL S                ++     +S  T EG+E LI+ + S   +  +    
Sbjct: 393 VNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLISTLTSNFESLSQSSAD 452

Query: 372 S--IPSHKRHLYHLSQTVRY--LEMASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVE 426
           +  +   KR    L   V Y   E     +    + +  ENLR AS  + KITG  + +E
Sbjct: 453 ASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAIGIE 512

Query: 427 QLLDIIFSKFCIGK 440
           ++LD +FSKFCIGK
Sbjct: 513 EILDSVFSKFCIGK 526


>gi|303247604|ref|ZP_07333875.1| tRNA modification GTPase TrmE [Desulfovibrio fructosovorans JJ]
 gi|302491084|gb|EFL50978.1| tRNA modification GTPase TrmE [Desulfovibrio fructosovorans JJ]
          Length = 465

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 135/459 (29%), Positives = 216/459 (47%), Gaps = 26/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----PRKASLRYFFGLDGRI 60
           +TI AV+T      + I+RLSGP    V   +    +P      P +          GR+
Sbjct: 9   DTIAAVATPPGRGGVGIVRLSGPLAKAVATKLFTSARPDFAGLRPYRLHHGTVRDASGRV 68

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ +    P P S+TGED+AE   HG   V+  +    A     R A PGEF++RA+ N
Sbjct: 69  LDEVMAAFMPGPGSYTGEDTAEIFCHGAPVVLAAV-LAAACAAGARPAGPGEFTKRAYLN 127

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++A+LI++   +   L++  +SG +     +    L  +R+ +   +DF +
Sbjct: 128 GRLDLSQAEAVAELIAARGAVDASLALTRLSGGMGEAARELGRALGELRAGVCLAVDFPD 187

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+V+    +   + +  + + I + ++ G+     R G  + + G  NAGKSSLFNA  
Sbjct: 188 -EEVECQPKEAFADGVAAVMDRIDALLAAGRRARPFREGAVVALFGKVNAGKSSLFNAFL 246

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D A+V D PGTTRD L   LDL+G  V+++DTAG+RET D VE  G KR       AD
Sbjct: 247 GTDRALVADQPGTTRDYLEEGLDLDGVPVRLTDTAGLRETPDAVEAAGKKRGRDVAGRAD 306

Query: 301 LILLLK--------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           L L +         +  ++  +        + +  K+DL +        L          
Sbjct: 307 LGLYVVDGAAPYAPDPEAEALLEELGPRRVLVVVNKADLPAAEPGAAKKLKARGLETVAV 366

Query: 344 SSFTGEGLEELINKIKSILSN-KFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCG 401
           S+ TG GL  L+  ++  L+       P +   + R    L      L  + +       
Sbjct: 367 SARTGFGLTGLLTAMRERLTATDGPPEPAATAPNAREAASLEAARLELAGLVADIRAGVP 426

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D++   L  A+  +  ITG    + +L+ +FSKFCIGK
Sbjct: 427 YDLLGARLETAAALVADITGETTPDDVLNAVFSKFCIGK 465


>gi|225554700|gb|EEH02995.1| tRNA modification GTPase GTPBP3 [Ajellomyces capsulatus G186AR]
          Length = 615

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 157/541 (29%), Positives = 252/541 (46%), Gaps = 112/541 (20%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLD-----GRI 60
           TI+A+ST    +AI+I+R+SGP+C Q+ + +C K+  P PR A+LR  +          I
Sbjct: 63  TIYALSTAPGRAAIAIVRVSGPACVQIYDALCPKRPLPNPRVAALRTLYDPSVPPSVNTI 122

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL-----------RLAN 109
           LD+ +++ FP+P + TGED  E H+HGG AVV  +L  + +               R A 
Sbjct: 123 LDRAVVLHFPAPNTVTGEDVLELHIHGGPAVVKAVLNAIPRCAGAFSNEKIAMPSIRYAE 182

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G SG L+  Y +W  +L + R
Sbjct: 183 PGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERWRQQLLYAR 242

Query: 170 SFIEADLDFSEEEDVQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
             +EA +DFSE++            +  ++  L   I+ HI     GE++R+G +I +LG
Sbjct: 243 GEMEALIDFSEDQHFDESIEDFVSSITGEVRNLVRQINLHIENASKGELLRSGIRIALLG 302

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD----- 281
             NAGKSSL N +  ++ AIV+   GTTRD++ + +D+ GY  K  D AG+R        
Sbjct: 303 APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGYFCKFGDMAGLRSDHIARSG 362

Query: 282 ----DIVEKEGIKRTFLEVENADLILLLKEINSKKE-------------------ISFPK 318
                 VE+EGI+R       +D+++++  +                        I+  K
Sbjct: 363 SMPIGAVEQEGIRRAKARALESDVVIVVLSLEESDNGTGVKLVLEPEVVDAVRSCIALEK 422

Query: 319 NIDF------------IFIGTKSDLYSTYTEEYDHLISSFTGEGL--------------- 351
           ++                  T+ +L  + TEE   +    T + +               
Sbjct: 423 HMIVAVNKFDKYSPTTYTARTQQELVDSLTEEISSVEPRLTQDQIFLISCREAENEVSKE 482

Query: 352 ----------EELINKIKSI-----LSNKFKKL-----PFSIPSHKRHLYHLSQTVRYL- 390
                      ELI   K +     L N  ++        S+    R   +L + V++L 
Sbjct: 483 ADPGNIQKFLGELIRTFKRMSTPSELDNGNEQFDKLYWEDSLGVTHRQRSNLQKCVQHLN 542

Query: 391 -----------EMASLNEKDCGLDII--AENLRLASVSLGKITGC---VDVEQLLDIIFS 434
                        A+  + +   DI+  AE+LR A+  L KITG     DVE +L ++F 
Sbjct: 543 DFLSQTCQTPDNAANAEQIEVNFDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVVFE 602

Query: 435 K 435
           K
Sbjct: 603 K 603


>gi|151946184|gb|EDN64415.1| mitochondrial splicing system relatd protein [Saccharomyces
           cerevisiae YJM789]
          Length = 526

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 166/494 (33%), Positives = 253/494 (51%), Gaps = 55/494 (11%)

Query: 2   NHEKETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDGR 59
             ++ TI+A+ST A   SAI+IIR+SG     +   +       P RKA LR  +     
Sbjct: 33  TFQQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSC 92

Query: 60  ------------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--- 104
                       +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  + +   
Sbjct: 93  SVKPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSS 152

Query: 105 ---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQW 161
              +R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W
Sbjct: 153 GKDIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENW 212

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF----LKNDISSHISQGKLGEIIR 217
            + +    + + A +DF+++   +  ++ E+ +++      L++ I + + + +   I++
Sbjct: 213 RETIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTILQ 272

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAGI
Sbjct: 273 NGIKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGI 332

Query: 278 RET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----------NIDFIFI 325
           RE   D +E  GI+R   +   +DL L + +     ++               N   I +
Sbjct: 333 REKSSDKIEMLGIERAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIV 392

Query: 326 GTKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             KSDL S                ++     +S  T EG+E LI+ + S   +  +    
Sbjct: 393 VNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLISTLTSNFESLSQSSAD 452

Query: 372 S--IPSHKRHLYHLSQTVRY--LEMASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVE 426
           +  +   KR    L   V Y   E     +    + +  ENLR AS  + KITG  + +E
Sbjct: 453 ASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAIGIE 512

Query: 427 QLLDIIFSKFCIGK 440
           ++LD +FSKFCIGK
Sbjct: 513 EILDSVFSKFCIGK 526


>gi|118582021|ref|YP_903271.1| tRNA modification GTPase TrmE [Pelobacter propionicus DSM 2379]
 gi|205415790|sp|A1AV43|MNME_PELPD RecName: Full=tRNA modification GTPase mnmE
 gi|118504731|gb|ABL01214.1| tRNA modification GTPase trmE [Pelobacter propionicus DSM 2379]
          Length = 456

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 150/467 (32%), Positives = 238/467 (50%), Gaps = 45/467 (9%)

Query: 5   KETIFAVSTGALP-----------SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF 53
           ++TI A+ST               SA  I            E + +  +      S R++
Sbjct: 4   RDTIAAISTPPGNGGIGIIRISGGSASCI-----------AETLFRPVRSGG-LISHRFY 51

Query: 54  FG-----LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLA 108
           +G       G ++D+ + ++  +P S+T ED  E H HGG+ VV  IL  L      RLA
Sbjct: 52  YGTLIDIQTGAVVDEVMAVIMRAPHSYTREDVLELHCHGGMLVVERILS-LVLRAGARLA 110

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
            PGEF+RRAF NG+IDL++AES+ D+IS++T+    L+     G LSS   +    L H 
Sbjct: 111 EPGEFTRRAFLNGRIDLVQAESVMDIISAQTDAALALAQRQRGGVLSSRIAEARQLLLHA 170

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
            + IEA +DF E +D+     + + + +   +  I   +     G ++R G  ++I+G  
Sbjct: 171 LALIEAYIDFPE-DDLGETDVESIRSSVEGARTHIRRLLEDFNEGRLLREGISVLIIGKP 229

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           NAGKSSL N L  ++ AIVT +PGTTRD++   ++L G  V++ DTAGIR T+D++E+EG
Sbjct: 230 NAGKSSLLNRLLNENRAIVTHLPGTTRDIIEETINLGGLAVRLLDTAGIRHTEDVIEQEG 289

Query: 289 IKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
           I R   ++  ADLIL + + +       +  +   +   F+   +K+DL        +  
Sbjct: 290 INRALEKIPQADLILFVLDGSRPFGPEDRLILDALQGNRFVAAISKADLPRVLELPSECC 349

Query: 343 ------ISSFTGEGLEELINKIKSILS--NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA- 393
                  S+ +GEG+++L + ++S+           +   S  RH   LS     L    
Sbjct: 350 NLPQVSFSAESGEGVDDLKSTVRSLFVSSQAIDNREYVAISRVRHRDALSSADGSLSRFR 409

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +    LD++A +LR A  S+G++TG V  E +LD+IFS FCIGK
Sbjct: 410 QGLDSGASLDLLALDLREALASVGEVTGQVTNEDVLDLIFSSFCIGK 456


>gi|170593343|ref|XP_001901424.1| tRNA modification GTPase TrmE family protein [Brugia malayi]
 gi|158591491|gb|EDP30104.1| tRNA modification GTPase TrmE family protein [Brugia malayi]
          Length = 1828

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 164/452 (36%), Positives = 246/452 (54%), Gaps = 34/452 (7%)

Query: 7    TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
            TIFA+S+GALP+AIS+IR+SG    +  E +  ++K  PR+         DG ++D+G+ 
Sbjct: 1393 TIFAMSSGALPAAISVIRVSGKESRRCLEELTGREKILPRELFYANIR-RDGELIDRGMA 1451

Query: 67   IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
            +  P P++ TGED AEF+VHG  AVV+ +LE LA+  N++ A  GEF++RAF NGK+ L 
Sbjct: 1452 VFLPGPKTSTGEDVAEFYVHGSRAVVDCLLEALAQFDNVQPAKAGEFTKRAFFNGKMTLH 1511

Query: 127  EAESLADLISSETEMQRRLSM-EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E +SLA L+++ T+ QRRL++     G+          ++  +R+ +EA +DF    D  
Sbjct: 1512 EVQSLAYLLAARTQRQRRLALHRNTLGK---------KQIIEVRASVEASIDFG---DDV 1559

Query: 186  NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             F  +++   +  + +++S    Q K G +I  G +IVILG +N GKSSLFN +A +D+A
Sbjct: 1560 EFQWEDIRVAMSSIISELSCIQEQMKRGALINEGLRIVILGQTNVGKSSLFNHMANRDMA 1619

Query: 246  IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILL 304
            IV++I GTTRD L I + L    V I DTAGIRE   D +E EGI+RT      AD+I++
Sbjct: 1620 IVSNIEGTTRDSLEITVQLSSVPVTIIDTAGIREIPLDSLEAEGIQRTLRRAVEADIIIV 1679

Query: 305  LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYDHLI----SSFTGE 349
            + + +  K+               K+        K DL S              S  +GE
Sbjct: 1680 VLDSSICKDFERDVRSVLSWCNLKKDTPVFVALNKCDLRSVPNNILLPWPAISISCISGE 1739

Query: 350  GLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            G+  L+  I   +          ++ S + H   + + +  L  A L  KD    I AE 
Sbjct: 1740 GISSLLKIICDYIDELCPISDNSALVSSQIHRLLVKEAISVLTKA-LKAKDVA--ITAEL 1796

Query: 409  LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LR  S  + +++G V  EQ+LD IFS FCIGK
Sbjct: 1797 LRDVSDCISEMSGIVVNEQILDEIFSSFCIGK 1828


>gi|32265609|ref|NP_859641.1| tRNA modification GTPase TrmE [Helicobacter hepaticus ATCC 51449]
 gi|32261657|gb|AAP76707.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 476

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 235/464 (50%), Gaps = 28/464 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M  +  TI A++T     AISI+RLSG   + +   +  K+   PR A L + +      
Sbjct: 17  MILDDSTIVAIATPIGVGAISIVRLSGEKAYHIALALTHKESLKPRYAHLCHIYDAQQMP 76

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L++ FP P S+T +D  E   HGGI     I++   K+   R+A  GEF++RAF  
Sbjct: 77  IDEALVLYFPKPYSYTTQDVCEVQCHGGIVSARAIVQLCLKL-GARMAQAGEFAKRAFLG 135

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL + +++A LI S++    ++ M  + G+L +   +  + L  I +F E  +D+SE
Sbjct: 136 GRLDLAQVQAVAGLIQSQSLEANKILMRQLKGDLGTFVNRTRENLLEILAFSEVHIDYSE 195

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             +V+    +++   + +++N++S         + I  GY + I+G  N GKSSL NAL 
Sbjct: 196 --EVEESYIRDIQQKLAYVENELSHIYHISLTRQSIIEGYTLSIIGKPNVGKSSLLNALL 253

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIV++I GTTRD +   L ++G L++I DTAGIRE+DD +E+ GI +T   +  ++
Sbjct: 254 RYERAIVSEIEGTTRDTIEEMLTIKGSLLRIVDTAGIRESDDKIEQIGILKTKEALMRSN 313

Query: 301 LILLLKEINSKKEISFP----------KNIDFIFIGTKSDLYSTYTEEYDHLIS------ 344
           +I+ + + +   +              +N   + I  KSDL     EE  H +       
Sbjct: 314 IIVAIFDGSRPFDAEDKAIMEILKTQCQNKYILVIINKSDLPLQCEEELLHNLLRLHNKA 373

Query: 345 --------SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                   S   EG+++++  ++ ++S         I +    L  + + +  +  A   
Sbjct: 374 LLCMPLHLSTKYEGVQKVLECLEEVVSTHNGD-ESMILTSSYQLDCIKKALECIVKAHNV 432

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                L++ +  ++    S+ KIT   +  +LLD +F+ FC+GK
Sbjct: 433 LDIGQLELFSYQIQDCIESICKITHPYENAELLDRLFATFCLGK 476


>gi|325475103|gb|EGC78289.1| tRNA modification GTPase mnmE [Treponema denticola F0402]
          Length = 472

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 158/467 (33%), Positives = 232/467 (49%), Gaps = 34/467 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGR 59
            + I A++T   P+A+ I+R SG     +   I  K K            G        +
Sbjct: 9   DDPIAAIATALSPAALGIVRASGKGAIDLASAIFSKPKKLKEAQGNTILHGWVLDPESKK 68

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+  + V+  P+SFTGEDS EF  HGG AVV  I   L +    R A  GEF+ RAF 
Sbjct: 69  EVDEVTVCVYREPKSFTGEDSVEFICHGGTAVVLKIYRLLIE-NGFRAAEGGEFTFRAFA 127

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK DL  AE++ ++I+S+T++   L+   +SG L S   +    LT + +  + ++++ 
Sbjct: 128 NGKADLTRAEAVNEIINSKTDINIELAAGRLSGNLFSGIEEIKHGLTAVIAAADVEIEYP 187

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+E+    +    L  IL +   +          +I   G K+V+ G +NAGKSSLFNAL
Sbjct: 188 EDEETSQGAFSPDL--ILRIIEPLKDLADSWAAEKIFIQGAKVVLAGKTNAGKSSLFNAL 245

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            K+D AIV+DI GTTRD L   L+  G  V + DTAGIR T D +E  G++R+     NA
Sbjct: 246 LKEDRAIVSDIHGTTRDWLEASLNFNGIPVSLYDTAGIRYTQDSIEAIGVERSLEMSRNA 305

Query: 300 DLILLLKEINS--------KKEISFPKN--IDFIFIGTKSDLYSTYTEEY---------- 339
           DLIL L +           K++  F KN     I + TK DL  T ++E           
Sbjct: 306 DLILYLCDPKDILSAGSLNKEDSEFIKNAKAPVITVITKEDLLDTESKEKIKEILKAEKI 365

Query: 340 --DHLISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMAS 394
               +ISS    G++ L  K  S+L+       FS       +R    + + +  L+ A 
Sbjct: 366 AEPIIISSKASNGIKALSEKAYSVLAKNTGSSGFSKTASLGSERQRDAVQKALDVLKTAY 425

Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            N  +   LD+I E+L  A   LG+ITG V  + +LD +FS FC+GK
Sbjct: 426 QNSLEGFPLDLIVEDLEEALSFLGEITGEVRSDDILDKVFSGFCVGK 472


>gi|216263825|ref|ZP_03435819.1| tRNA modification GTPase TrmE [Borrelia afzelii ACA-1]
 gi|215979869|gb|EEC20691.1| tRNA modification GTPase TrmE [Borrelia afzelii ACA-1]
          Length = 464

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 138/462 (29%), Positives = 236/462 (51%), Gaps = 31/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGR--- 59
            + I A++T  L SA+ +IR SG S       I          A  ++ Y + LD     
Sbjct: 8   DDDIVALATPFLSSALCVIRSSGASSISKFSKIFSNHSALNSAAGNTIHYGYILDNENNC 67

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ ++ ++ +P+SFTG+D+ E   HG +  +  I++ L      R+A PGEF+ R+F 
Sbjct: 68  KVDEVVVCLYRAPKSFTGQDAVEVIAHGSVIGIKKIID-LFLKSGFRMAEPGEFTFRSFL 126

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
             KIDL +AE++ ++I ++T     L++  +SG L          + +  S +   LD+ 
Sbjct: 127 AKKIDLTKAEAINEIIFAKTNKAYSLAVNKLSGALFVKIDTIKKCILNFLSAVSVYLDYE 186

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            ++   +     +LN     K ++   I   K+ E I +G  +V+ G  NAGKSSLFN  
Sbjct: 187 VDDREIDIPFDLILNS----KVELKKLIDSYKVYEKIDHGITLVLAGSVNAGKSSLFNLF 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++   ++ A
Sbjct: 243 LKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNSLIKEA 302

Query: 300 DLILLLKEINS---KKEISFPK----NIDFIFIGTKSDL-YSTYTEEYD----------H 341
            L++ + +I+S   + ++ F      N   +F+  K DL  +  TEE+            
Sbjct: 303 SLVIYVIDISSNLTRDDLLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSSVLNSSNLI 362

Query: 342 LISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
           +IS    EG++ L +KI++++S +     L   I S  R +  L +     L++ S  ++
Sbjct: 363 MISIKNLEGIDILYDKIRTLISYERVEIGLDDIIISSSRQIQLLEKAYALILDLLSKIDR 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 423 QVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|111115001|ref|YP_709619.1| tRNA modification GTPase TrmE [Borrelia afzelii PKo]
 gi|122956413|sp|Q0SNY5|MNME_BORAP RecName: Full=tRNA modification GTPase mnmE
 gi|110890275|gb|ABH01443.1| thiophene and furan oxidation protein [Borrelia afzelii PKo]
          Length = 464

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 138/462 (29%), Positives = 236/462 (51%), Gaps = 31/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGR--- 59
            + I A++T  L SA+ +IR SG S       I          A  ++ Y + LD     
Sbjct: 8   DDDIVALATPFLSSALCVIRSSGASSISKFSKIFSNHSALNSAAGNTIHYGYILDNENNC 67

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ ++ ++ +P+SFTG+D+ E   HG +  +  I++ L      R+A PGEF+ R+F 
Sbjct: 68  KVDEVVVCLYRAPKSFTGQDAVEVIAHGSVIGIKKIID-LFLKSGFRMAEPGEFTFRSFL 126

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
             KIDL +AE++ ++I ++T     L++  +SG L          + +  S +   LD+ 
Sbjct: 127 AKKIDLTKAEAINEIIFAKTNKAYSLAVNKLSGALFVKIDTIKKCILNFLSAVSVYLDYE 186

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            ++   +     +LN     K ++   I   K+ E I +G  +V+ G  NAGKSSLFN  
Sbjct: 187 VDDREIDIPFDLILNS----KVELKKLIDSYKVYEKIDHGITLVLAGSVNAGKSSLFNLF 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++   ++ A
Sbjct: 243 LKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNSLIKEA 302

Query: 300 DLILLLKEINS---KKEISFPK----NIDFIFIGTKSDL-YSTYTEEYD----------H 341
            L++ + +I+S   + ++ F      N   +F+  K DL  +  TEE+            
Sbjct: 303 SLVIYVIDISSNLTRDDLLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSSVLNSSNLI 362

Query: 342 LISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
           +IS    EG++ L +KI++++S +     L   I S  R +  L +     L++ S  ++
Sbjct: 363 MISIKNLEGIDILYDKIRTLISYERVEIGLDDIIISSSRQIQLLEKAYALILDLLSKIDR 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 423 QVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|75761491|ref|ZP_00741455.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74491030|gb|EAO54282.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 332

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 184/308 (59%), Gaps = 7/308 (2%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI+I+R+SG    +  + I K K       S    +G        
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKD-LTEVPSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+IDL +AE++ DLI ++T+    +++  M G LS L G+   ++    + +E ++D+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETLAHVEVNIDY 179

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  +   ++     ++++I   +   K G+I+R G    I+G  N GKSSL N+
Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L ++  AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299

Query: 299 ADLILLLK 306
           ADL+L++ 
Sbjct: 300 ADLVLVVV 307


>gi|302842518|ref|XP_002952802.1| hypothetical protein VOLCADRAFT_82002 [Volvox carteri f.
           nagariensis]
 gi|300261842|gb|EFJ46052.1| hypothetical protein VOLCADRAFT_82002 [Volvox carteri f.
           nagariensis]
          Length = 596

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 227/465 (48%), Gaps = 29/465 (6%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-------KPFPRKASLRYFF 54
             +++TI A+ +G    +++IIR+SG     +   + +         +P   +       
Sbjct: 135 TRDEDTIAAIVSGMAHGSVAIIRVSGTDAVSIASRVFRPGGRFRFGWQPKSHRVYYGTAV 194

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             D  +LD+ LL+   SP S+T ED  E H HGG      +L  L +    RLA PGEF+
Sbjct: 195 DGDESLLDEVLLLAMLSPRSYTAEDVVEVHCHGGGVCGGRVLRALIEA-GARLAKPGEFT 253

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF NG++DL +AE++++L+++ T      ++ G+ G L  +  +   +   + + +EA
Sbjct: 254 LRAFLNGRLDLAQAEAVSELLTARTPAAADSALAGLRGGLGGVVSELRSQCLDVLAELEA 313

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LDF E  D+      E+   +  ++  I   +   + G ++RNG ++ I+G  N GKSS
Sbjct: 314 RLDFDE--DLTQIDIPELKRKVERIQAGIERALRTARAGTLLRNGLQVAIVGRPNVGKSS 371

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NA    D AIVT++ GTTRDVL   L + G  V + DTAGIR+++D+VE+ G++R+  
Sbjct: 372 LLNAWTNSDRAIVTEVAGTTRDVLEATLSIGGVPVTLLDTAGIRQSNDVVERIGVERSQA 431

Query: 295 EVENADLILLLKE-----INSKKEI------------SFPKNIDFIFIGTKSDLYSTYTE 337
               AD+++++ +      ++  +I            +       +       L +  T 
Sbjct: 432 AAAAADIVIMVVDGAAGWTDADSDIFKALWGDGPGSSTCKVGRLSLQQQLLLPLVARDTF 491

Query: 338 EYDHLISSFTGEGLEELINKIKSILSN-KFKKLPFSIPSHKRHLYHLSQTVRYL-EMASL 395
                 S+    GLEEL   +  +    K      S   ++R    L ++   L  +   
Sbjct: 492 AAVVRTSASQRRGLEELDAALLQLAGAPKLASGGVSWSINERQGEALVRSHEALMRLTES 551

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              D  LD    +LR A ++LG+++G    E++LD +FS+FCIGK
Sbjct: 552 IAADLPLDFWTIDLRSALLALGEVSGDEVAEEVLDTVFSRFCIGK 596


>gi|225552070|ref|ZP_03773010.1| tRNA modification GTPase TrmE [Borrelia sp. SV1]
 gi|225371068|gb|EEH00498.1| tRNA modification GTPase TrmE [Borrelia sp. SV1]
          Length = 464

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 236/462 (51%), Gaps = 31/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGR--- 59
            + I A++T  L SA+ +IR SG S       I          +  ++ Y + LD     
Sbjct: 8   NDDIVALATPFLSSALCVIRSSGASSISKFSKIFSNHSALNSASGNTIHYGYILDNENDC 67

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ ++ ++ +P+SFTG+D+ E   HG +  +  I++ L      R+A PGEF+ RAF 
Sbjct: 68  KVDEVVVCLYRAPKSFTGQDAIEVMAHGSVIGIKKIID-LFLKSGFRMAEPGEFTLRAFL 126

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
             KIDL +AE++ ++I ++T     L++  +SG L          + +  S +   LD+ 
Sbjct: 127 AKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGALFVKIDAIKKSILNFLSAVSVYLDYE 186

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            ++   +     +L+     K ++   I+  K+ E I +G  +V+ G  NAGKSSLFN  
Sbjct: 187 VDDHEISIPFDLILSS----KAELKKLINSYKVYEKIDHGVALVLAGSVNAGKSSLFNLF 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++   ++ A
Sbjct: 243 LKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNSLIKEA 302

Query: 300 DLILLLKEINS---KKEISFPK----NIDFIFIGTKSDL-YSTYTEEYD----------H 341
            L++ + +++S   K +  F      N   +F+  K DL  +  TEE+            
Sbjct: 303 SLVIYVIDVSSNLTKDDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSKVLNSSNLI 362

Query: 342 LISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
           +IS+   EG++ L +KI++++S +     L   I S  R +  L +     L + S  ++
Sbjct: 363 MISTKNLEGIDILYDKIRALISYERVEIGLDDIIISSSRQMQLLEKAYALILNLLSKIDR 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 423 QVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|255263117|ref|ZP_05342459.1| tRNA modification GTPase TrmE [Thalassiobium sp. R2A62]
 gi|255105452|gb|EET48126.1| tRNA modification GTPase TrmE [Thalassiobium sp. R2A62]
          Length = 428

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 140/436 (32%), Positives = 231/436 (52%), Gaps = 12/436 (2%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA++T    + ++IIR+SG   F     +    + + +  +LR     +G +LD+ L+
Sbjct: 3   TIFALATAHGKAGVAIIRISGADAFSGVSKLVGSLQ-YEKSMALRAVRTPEGDLLDQALV 61

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + F +  SFTGED  E  +HG  A+   +L +L+ +     A  GEF+RRA ENG +DL 
Sbjct: 62  LTFVAGASFTGEDVVELQLHGSPAITQAVLRQLSLLEGFVAAEAGEFTRRALENGCLDLT 121

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           + E L+DLI +ETE QR  ++    G L +    W  +L    S +EA +DF++ EDV  
Sbjct: 122 QVEGLSDLIEAETEAQRIQAIRVFDGALGAKADVWRQRLIRAVSLVEATIDFAD-EDVPT 180

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
               EV   +  ++ ++S   +  ++ E +R+G+++ I+G  N GKS+L NA+A +D AI
Sbjct: 181 DVMPEVKELLEAVRKELSLEAAGVEIAERVRDGFEVAIVGAPNVGKSTLLNAIAGRDAAI 240

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
            ++  GTTRD++ + +DL G  V   DTAG+ + D  VE+ GI+R       ADL ++L 
Sbjct: 241 TSEYAGTTRDIIEVKIDLGGLPVTFLDTAGLHDADSAVEQIGIRRALDRAAQADLRVVLS 300

Query: 307 EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                 EI   +  + +        +S    + +  IS  +G G+ EL+ ++ + L ++ 
Sbjct: 301 IDGKLPEIELLEGDEALVA------HSDQGADPNKEISGLSGFGVSELLARVANKLGHRA 354

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVD 424
                +I   +RH   L   +  L   +  +   D   +I++EN+R    SL  + G +D
Sbjct: 355 SGAGLAI--KERHRVALIDGLNSLTAVTDMIEVGDYLEEILSENIRDGIKSLDALVGRMD 412

Query: 425 VEQLLDIIFSKFCIGK 440
           VE +L  IF  FCIGK
Sbjct: 413 VEDVLAEIFLSFCIGK 428


>gi|259148601|emb|CAY81846.1| Mss1p [Saccharomyces cerevisiae EC1118]
          Length = 526

 Score =  339 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 167/494 (33%), Positives = 252/494 (51%), Gaps = 55/494 (11%)

Query: 2   NHEKETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDGR 59
             ++ TI+A+ST A   SAI+IIR+SG     +   +       P RKA LR  +     
Sbjct: 33  TFQQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSC 92

Query: 60  ------------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--- 104
                       +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  + +   
Sbjct: 93  SVKPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSS 152

Query: 105 ---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQW 161
              +R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W
Sbjct: 153 GKDIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENW 212

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF----LKNDISSHISQGKLGEIIR 217
            + +    + + A +DF+++   +  ++ E+ +D+      L++ I + + + +   I++
Sbjct: 213 RETIIENMAQLTAIIDFADDNSQEIQNTDEIFHDVEKNIICLRDQIVTFMQKVEKSTILQ 272

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAGI
Sbjct: 273 NGIKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGI 332

Query: 278 RET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----------NIDFIFI 325
           RE   D +E  GI R   +   +DL L + +     ++               N   I +
Sbjct: 333 REKSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIV 392

Query: 326 GTKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             KSDL S                ++     +S  T EG+E LI+ + S   +  +    
Sbjct: 393 VNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLISTLTSNFESLSQSSAD 452

Query: 372 S--IPSHKRHLYHLSQTVRY--LEMASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVE 426
           +  +   KR    L   V Y   E     +    + +  ENLR AS  + KITG  + +E
Sbjct: 453 ASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAIGIE 512

Query: 427 QLLDIIFSKFCIGK 440
           ++LD +FSKFCIGK
Sbjct: 513 EILDSVFSKFCIGK 526


>gi|6323665|ref|NP_013736.1| Mss1p [Saccharomyces cerevisiae S288c]
 gi|1709142|sp|P32559|MSS1_YEAST RecName: Full=tRNA modification GTPase MSS1, mitochondrial; Flags:
           Precursor
 gi|798934|emb|CAA89126.1| Mss1p [Saccharomyces cerevisiae]
 gi|110610140|gb|ABG77646.1| mitochondrial GTP-binding protein [Saccharomyces cerevisiae]
 gi|190408262|gb|EDV11527.1| GTPase MSS1, mitochondrial precursor [Saccharomyces cerevisiae
           RM11-1a]
 gi|285814026|tpg|DAA09921.1| TPA: Mss1p [Saccharomyces cerevisiae S288c]
 gi|323332012|gb|EGA73423.1| Mss1p [Saccharomyces cerevisiae AWRI796]
          Length = 526

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 166/494 (33%), Positives = 252/494 (51%), Gaps = 55/494 (11%)

Query: 2   NHEKETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDGR 59
             ++ TI+A+ST A   SAI+IIR+SG     +   +       P RKA LR  +     
Sbjct: 33  TFQQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSC 92

Query: 60  ------------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--- 104
                       +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  + +   
Sbjct: 93  SVKPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSS 152

Query: 105 ---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQW 161
              +R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W
Sbjct: 153 GKDIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENW 212

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF----LKNDISSHISQGKLGEIIR 217
            + +    + + A +DF+++   +  ++ E+ +++      L++ I + + + +   I++
Sbjct: 213 RETIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTILQ 272

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAGI
Sbjct: 273 NGIKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGI 332

Query: 278 RET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----------NIDFIFI 325
           RE   D +E  GI R   +   +DL L + +     ++               N   I +
Sbjct: 333 REKSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIV 392

Query: 326 GTKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             KSDL S                ++     +S  T EG+E LI+ + S   +  +    
Sbjct: 393 VNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLISTLTSNFESLSQSSAD 452

Query: 372 S--IPSHKRHLYHLSQTVRY--LEMASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVE 426
           +  +   KR    L   V Y   E     +    + +  ENLR AS  + KITG  + +E
Sbjct: 453 ASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAIGIE 512

Query: 427 QLLDIIFSKFCIGK 440
           ++LD +FSKFCIGK
Sbjct: 513 EILDSVFSKFCIGK 526


>gi|256273535|gb|EEU08469.1| Mss1p [Saccharomyces cerevisiae JAY291]
          Length = 526

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 166/495 (33%), Positives = 253/495 (51%), Gaps = 55/495 (11%)

Query: 1   MNHEKETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDG 58
           +  ++ TI+A+ST A   SAI+IIR+SG     +   +       P RKA LR  +    
Sbjct: 32  LTFQQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSS 91

Query: 59  R------------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-- 104
                        +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  + +  
Sbjct: 92  CSVKPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRS 151

Query: 105 ----LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQ 160
               +R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  
Sbjct: 152 SGKDIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFEN 211

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF----LKNDISSHISQGKLGEII 216
           W + +    + + A +DF+++   +  ++ E+ +++      L++ I + + + +   I+
Sbjct: 212 WRETIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTIL 271

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +NG K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAG
Sbjct: 272 QNGIKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAG 331

Query: 277 IRET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----------NIDFIF 324
           IRE   D +E  GI R   +   +DL L + +     ++               N   I 
Sbjct: 332 IREKSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIII 391

Query: 325 IGTKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
           +  KSDL S                ++     +S  T EG+E LI+ + S   +  +   
Sbjct: 392 VVNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLISTLTSNFESLSQSSA 451

Query: 371 FS--IPSHKRHLYHLSQTVRY--LEMASLNEKDCGLDIIAENLRLASVSLGKITGC-VDV 425
            +  +   KR    L   V Y   E     +    + +  ENLR AS  + KITG  + +
Sbjct: 452 DASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAIGI 511

Query: 426 EQLLDIIFSKFCIGK 440
           E++LD +FSKFCIGK
Sbjct: 512 EEILDSVFSKFCIGK 526


>gi|317154267|ref|YP_004122315.1| tRNA modification GTPase TrmE [Desulfovibrio aespoeensis Aspo-2]
 gi|316944518|gb|ADU63569.1| tRNA modification GTPase TrmE [Desulfovibrio aespoeensis Aspo-2]
          Length = 469

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 219/468 (46%), Gaps = 34/468 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRYFFGLD 57
             ++TI A++T      + I+R+SG     +   I +  +       P            
Sbjct: 6   RSRDTIAAIATPPGDGGVGIVRISGDRSRAIAARIFRPARASFTEFIPYTLHYGRIVDGR 65

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
             +LD  L+   P P S+TGED  E + HGG AV+  +LEE+ +    RLA  GEF+ RA
Sbjct: 66  DAVLDDVLVACMPGPGSYTGEDVVEINCHGGRAVLAAVLEEVLRC-GARLAERGEFTYRA 124

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F +G++DL +AE++A++I + T     L+   +SG L         +L  +R+ +   +D
Sbjct: 125 FMHGRLDLTQAEAVAEMIHAPTRSAAHLAQAKLSGLLGQRIAALRTRLEALRAALAVAVD 184

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F ++E V+    + +   +  ++ DI   +         R G  +V+ G  NAGKSSL N
Sbjct: 185 FPDDE-VECLPPEALAGGVAGVRVDIMDLLRAVDRTRTWREGALVVLAGRVNAGKSSLMN 243

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD------DIVEKEGIKR 291
            L  +  AIVTD PGTTRD L   + L+G  V++ DTAG+R         D VE  G+  
Sbjct: 244 GLLGRTRAIVTDQPGTTRDYLEETVTLDGLSVRLVDTAGMRADTAAAPRIDAVEAAGMAM 303

Query: 292 TFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYD----- 340
               ++ ADL+LLL +  +  +       +       + + T+ DL              
Sbjct: 304 GRELMDRADLVLLLADGTAPLDSGTLSLATVLSPERTLAVLTRRDLPGFDPAHGAPLAGL 363

Query: 341 ----HLISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRH---LYHLSQTVRYLEM 392
                 ISS TG GL+ L  +++  +L+   +  P  +  + R    L   ++ +R LE 
Sbjct: 364 GFELVEISSVTGHGLDTLCARVRERVLAGAGQPDPDELAPNARQAAILAEAAEELRQLEA 423

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L       D++   L  A V+L  ITG +  +++L  IF  FCIGK
Sbjct: 424 DALAA--VPYDLLGVRLETACVTLSSITGEITSQEVLASIFDTFCIGK 469


>gi|114778886|ref|ZP_01453683.1| tRNA modification GTPase [Mariprofundus ferrooxydans PV-1]
 gi|114550855|gb|EAU53421.1| tRNA modification GTPase [Mariprofundus ferrooxydans PV-1]
          Length = 393

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 130/394 (32%), Positives = 210/394 (53%), Gaps = 3/394 (0%)

Query: 48  ASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107
           A+L  +    G  LD+G+ + FP P S+TGED  E   HGG  ++  +L  L ++     
Sbjct: 2   ATLDAWLDHAGERLDQGITLYFPGPASYTGEDVVELQGHGGPVLLQALLSRLYEL-GCEP 60

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           A  GEF+RRA E+GK+DL +AE++A  I + T    + +   + GE      + + +LT 
Sbjct: 61  AQAGEFTRRAVEHGKLDLSQAEAVAACIDAATVRAGKQAQRQLQGEFGIHIDRLMQRLTS 120

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           + + +EA LDF EEE    + S      +  +   I   ++   LGE +  G  + ++G 
Sbjct: 121 LVAHVEASLDFPEEEIRDLYFSDLRNKMVETVVAPIKEMLASAPLGERLFEGATVALVGA 180

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKSSL NAL+ ++ AIV+ + GTTRD+L +D ++ G  ++++DTAG+R++ D+VE E
Sbjct: 181 PNVGKSSLLNALSGRERAIVSHLEGTTRDLLDVDFEVNGIPLRLTDTAGLRDSHDVVEIE 240

Query: 288 GIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
           G++R       AD+ L + +  S+ +   P     + +  K DL S    +    +S  +
Sbjct: 241 GVRRALQVASTADVTLFVADA-SRPDTWSPSIHADLLLMNKVDLESGDIPDEYIQLSVIS 299

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDIIA 406
           GEGL EL +++ S L +        + +H+RH   L + +  +E       +   LD+ A
Sbjct: 300 GEGLNELRSRLASFLGDIQMGDEGMMVTHERHRLVLVEALECIESGLGCLGNEELLDLAA 359

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              R A   L  I G  DVE +LD +FS+FCIGK
Sbjct: 360 MQWRRAWGLLAGILGIGDVEYILDRVFSEFCIGK 393


>gi|87198163|ref|YP_495420.1| tRNA modification GTPase TrmE [Novosphingobium aromaticivorans DSM
           12444]
 gi|123491120|sp|Q2GC37|MNME_NOVAD RecName: Full=tRNA modification GTPase mnmE
 gi|87133844|gb|ABD24586.1| tRNA modification GTPase trmE [Novosphingobium aromaticivorans DSM
           12444]
          Length = 437

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 162/446 (36%), Positives = 237/446 (53%), Gaps = 22/446 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDKG 64
           +TIFA+S+G  P+ I +IR+SGP        +  +  P PR+A+L       DG  LD+ 
Sbjct: 3   DTIFALSSGQPPAGIGVIRISGPGAGAALSSLAGR-LPSPRRATLATLADPRDGTHLDRT 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++  P P + TGED AE H+HGG AV+  +   L+ +P LR A PGEF+RRAF NG+ID
Sbjct: 62  MVLWLPGPATATGEDCAELHLHGGRAVIAAVEAALSSLPGLRRARPGEFTRRAFANGRID 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE LADL+S+ETE+QRR ++    G LS    +W   L  I + +EA LDFS+E+DV
Sbjct: 122 LAEAEGLADLLSAETELQRRTALAMAEGALSREVDEWRTTLLQISARLEAALDFSDEDDV 181

Query: 185 --------QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
                    +        D + L   +++ + +    E ++ G+++V+ G  NAGKS+LF
Sbjct: 182 GAGDGTQRASLLPPHFAADCISLACSLNTWLDR-PRAEPLKEGFRVVLAGPPNAGKSTLF 240

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD-IVEKEGIKRTFLE 295
           NAL + + AI    PGTTRD+LT    L+G      DTAG+R+     +E+ GI R    
Sbjct: 241 NALVEHEAAITAAEPGTTRDLLTHAAALDGVPFTFVDTAGLRDEGAGEIERIGIARARAA 300

Query: 296 VENADLILLLKEINSKKEISFPKNIDFIFIGTKS-DLYSTYTEEYDHLISSFTGEGLEEL 354
            E ADLIL L       E   P       I  ++ D  +    +    +S+ TGEG+   
Sbjct: 301 AEKADLILWL-----GPEGLGPAGRTLWEIAARADDPGAGRKSQCAFHLSAVTGEGMAAF 355

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
            + + +   +     P     ++R   HLS+  R LE A+  +      + AENLRL   
Sbjct: 356 RSALIAHARSAL-PAPGEAALNQRQHTHLSEVARALEDAAAEQDPL---LAAENLRLGRR 411

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            L  + G    E +LD +F +FCIGK
Sbjct: 412 GLDALVGRTGTEDMLDTLFGRFCIGK 437


>gi|205829161|sp|Q7VJY2|MNME_HELHP RecName: Full=tRNA modification GTPase mnmE
          Length = 467

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 235/464 (50%), Gaps = 28/464 (6%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M  +  TI A++T     AISI+RLSG   + +   +  K+   PR A L + +      
Sbjct: 8   MILDDSTIVAIATPIGVGAISIVRLSGEKAYHIALALTHKESLKPRYAHLCHIYDAQQMP 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L++ FP P S+T +D  E   HGGI     I++   K+   R+A  GEF++RAF  
Sbjct: 68  IDEALVLYFPKPYSYTTQDVCEVQCHGGIVSARAIVQLCLKL-GARMAQAGEFAKRAFLG 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL + +++A LI S++    ++ M  + G+L +   +  + L  I +F E  +D+SE
Sbjct: 127 GRLDLAQVQAVAGLIQSQSLEANKILMRQLKGDLGTFVNRTRENLLEILAFSEVHIDYSE 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             +V+    +++   + +++N++S         + I  GY + I+G  N GKSSL NAL 
Sbjct: 187 --EVEESYIRDIQQKLAYVENELSHIYHISLTRQSIIEGYTLSIIGKPNVGKSSLLNALL 244

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           + + AIV++I GTTRD +   L ++G L++I DTAGIRE+DD +E+ GI +T   +  ++
Sbjct: 245 RYERAIVSEIEGTTRDTIEEMLTIKGSLLRIVDTAGIRESDDKIEQIGILKTKEALMRSN 304

Query: 301 LILLLKEINSKKEISFP----------KNIDFIFIGTKSDLYSTYTEEYDHLIS------ 344
           +I+ + + +   +              +N   + I  KSDL     EE  H +       
Sbjct: 305 IIVAIFDGSRPFDAEDKAIMEILKTQCQNKYILVIINKSDLPLQCEEELLHNLLRLHNKA 364

Query: 345 --------SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                   S   EG+++++  ++ ++S         I +    L  + + +  +  A   
Sbjct: 365 LLCMPLHLSTKYEGVQKVLECLEEVVSTHNGD-ESMILTSSYQLDCIKKALECIVKAHNV 423

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                L++ +  ++    S+ KIT   +  +LLD +F+ FC+GK
Sbjct: 424 LDIGQLELFSYQIQDCIESICKITHPYENAELLDRLFATFCLGK 467


>gi|323353023|gb|EGA85323.1| Mss1p [Saccharomyces cerevisiae VL3]
          Length = 526

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 166/494 (33%), Positives = 251/494 (50%), Gaps = 55/494 (11%)

Query: 2   NHEKETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDGR 59
             ++ TI+A+ST A   SAI+IIR+SG     +   +       P RKA LR  +     
Sbjct: 33  TFQQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLXDSSTVPPIRKAILRNIYSPSSC 92

Query: 60  ------------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--- 104
                       +LD  LL+ F +P SFTGED  E HVHGG AVVN IL  +  + +   
Sbjct: 93  SVKPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILXAIGSLHDRSS 152

Query: 105 ---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQW 161
              +R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W
Sbjct: 153 GKDIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENW 212

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF----LKNDISSHISQGKLGEIIR 217
            + +    + + A +DF+++   +  ++ E+ +++      L++ I + + + +   I++
Sbjct: 213 RETIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTILQ 272

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAGI
Sbjct: 273 NGIKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGI 332

Query: 278 RET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----------NIDFIFI 325
           RE   D +E  GI R   +   +DL L + +     ++               N   I +
Sbjct: 333 REKSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIV 392

Query: 326 GTKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             KSDL S                ++     +S  T EG+E LI+ + S   +  +    
Sbjct: 393 VNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLISTLTSNFESLSQSSAD 452

Query: 372 S--IPSHKRHLYHLSQTVRY--LEMASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVE 426
           +  +   KR    L   V Y   E     +    + +  ENLR AS  + KITG  + +E
Sbjct: 453 ASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAIGIE 512

Query: 427 QLLDIIFSKFCIGK 440
           ++LD +FSKFCIGK
Sbjct: 513 EILDSVFSKFCIGK 526


>gi|57242376|ref|ZP_00370315.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis RM3195]
 gi|57017056|gb|EAL53838.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis RM3195]
          Length = 442

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 131/447 (29%), Positives = 226/447 (50%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISIIR+SG    ++   +  K +  PR A     F  +   +D+ 
Sbjct: 2   NDTIAALATAYGTGSISIIRVSGSRALELGLKLSHKDELSPRYAYFVKLFNDENVFIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGED  EF +HGG +V   +L+EL K  ++RLA  GEFS+RA  NGK+ 
Sbjct: 62  IMIYFKAPFSFTGEDVVEFQIHGGFSVSEILLDELLK-NDVRLAKAGEFSKRACLNGKMS 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L+A ++ DLI++++    ++    M G L+ L  +    L    +F+E  +D+++++  
Sbjct: 121 ALKALNIQDLINAKSAKSAKIIARNMQGTLADLIEKIRLDLIKSLAFVETSIDYADDDLP 180

Query: 185 QNFS--SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +     + +  +   +  +I +     +  + +  G+KI I+G  NAGKSSL NAL   
Sbjct: 181 SDLMEQIRMMCEENARILEEIYTL---SQSKKALLEGFKIAIIGKPNAGKSSLLNALLAY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+ + GTTRD +   L +  +LVKI DTAGIRE+++ +EK GI+ +   +  AD+I
Sbjct: 238 ERAIVSPLAGTTRDFIEESLKIGTHLVKIMDTAGIRESEEELEKIGIELSKKSLNEADII 297

Query: 303 LLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT-GEGLEE 353
           L L + + K +        +         ++  K DL   +    +  +   +  E +  
Sbjct: 298 LALFDSSRKFDDEDKEILNLLRNSKKKVFYLLNKCDLKPQFENLNEIDLIKISAKEDIAP 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L   ++S L+         + S    +    +    ++ A     +  L++ A    +A 
Sbjct: 358 LKKALESYLN--SLDSEGFLVSSLDFINACKKASEAIQRAKTLLDERVLELFAFEFNVAI 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L K T     E++LD +FS FC+GK
Sbjct: 416 EELAKFTKDFKREEILDEMFSNFCLGK 442


>gi|237750079|ref|ZP_04580559.1| tRNA modification GTPase mnmE [Helicobacter bilis ATCC 43879]
 gi|229374266|gb|EEO24657.1| tRNA modification GTPase mnmE [Helicobacter bilis ATCC 43879]
          Length = 450

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 234/452 (51%), Gaps = 22/452 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK----KKPFPRKASLRYFFGLDGRILD 62
           TI A+S+    SAISIIRLSG     +   + KK        PRKA+L   +   G +LD
Sbjct: 3   TIVAISSALAKSAISIIRLSGDEALHIASKLLKKDALESLLIPRKATLHRIYNEKGEMLD 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           K ++I F SP+SFTGED  EF  HGGI V N IL+         LA  GEFS RA  N K
Sbjct: 63  KAIVIYFKSPKSFTGEDIVEFQSHGGILVANEILKACLAF-GATLAKAGEFSMRALRNNK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL+E E+   LI++      +L    + G+LS +      ++ +I + IE ++D+SE E
Sbjct: 122 LDLVELEATLALINNTNTNLTKLLTRNIDGKLSEMLESVRQEILNIIAQIEVNIDYSE-E 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+      + ++ +L ++    + +   +  + +++  K+ I+G  N GKSSL N L  +
Sbjct: 181 DLDKDILSKSVSTLLSIQARFQAILDSSRHYQKLQD-IKLCIIGKPNVGKSSLLNLLLMQ 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIV+DI GTTRD +T  LD+ G LV ++DTAGI  + D +E +GI+++      +++I
Sbjct: 240 DRAIVSDIAGTTRDTITAVLDICGNLVSLTDTAGIHTSTDSIEMQGIEKSMKSARESEII 299

Query: 303 LLLKEINSK------KEISFPK----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           L + +I+        + + F K    N   + +  K+DL    T ++    +       E
Sbjct: 300 LCVFDISKPMSKEDFEILDFLKSECSNKSVLIVLNKNDLARQNTHDFTPFQTITLNTKDE 359

Query: 353 E----LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
                L  KI + L+ +     F + ++      L    + L +A     +  L++ +  
Sbjct: 360 NNARLLKEKIANFLTMEIDNNTF-VLTNATQSNLLESACKNLSIAKELLMNGSLELASFE 418

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L  +  SLG +T   DVE +LD +FS+FC+GK
Sbjct: 419 LHQSLQSLGSMTKPYDVEDMLDSMFSQFCVGK 450


>gi|307215187|gb|EFN89959.1| tRNA modification GTPase GTPBP3, mitochondrial [Harpegnathos
           saltator]
          Length = 435

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 161/436 (36%), Positives = 232/436 (53%), Gaps = 33/436 (7%)

Query: 37  ICKKKKPFPRKASLRYFFGLD-GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGI 95
           +    K  PRKA LR     + G ++D GL + FP P SFTGEDS EFHVHGG A+++ +
Sbjct: 1   MTNTSKLEPRKAFLRKIRDPETGEVIDHGLCLWFPGPHSFTGEDSVEFHVHGGPAILSRL 60

Query: 96  LEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS 155
           ++ L+K+  +  A PGEF+RRAF N K+DL E E LADLI +ETE QR+ ++    G L 
Sbjct: 61  MQTLSKLQ-VYPAQPGEFTRRAFYNNKLDLTEVEGLADLIEAETECQRKQALLQADGLLR 119

Query: 156 SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
            LY  W   L+   + IEA +DF E++++++   +     +  L +D+  H++ G+ GEI
Sbjct: 120 KLYDNWRKVLSEGVASIEAYIDFGEDDNIESDVVERTHGTLKKLISDMEEHLADGRKGEI 179

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +RNG + VI+G  N GKSSL N L +++  IVT I GTTRDV+ +  ++ GY V I+DTA
Sbjct: 180 LRNGVRTVIVGEPNVGKSSLLNHLVQRNAVIVTPIAGTTRDVIELSANISGYPVLIADTA 239

Query: 276 GI-RETDDIVEKEGIKRTFL----------EVENADLIL-----------LLKEINSKKE 313
           GI   TDDIVE EG++R              ++ + +              L  +   + 
Sbjct: 240 GITDHTDDIVEAEGVRRARKHVVNADFVVVVMDASKVAASNVTYDDYVHEYLSSLGIHEL 299

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEY-----DHLISSFTGEGLEELINKIKSILSNKFKK 368
           ++      F+ I  K DL S   E         LIS  T  G  +L+  +     N    
Sbjct: 300 LTKMGKQRFVVIMNKRDLLSEEDERRLSDTEGVLISCKTESGFRDLLRSLTDRFRNICGN 359

Query: 369 --LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD--IIAENLRLASVSLGKITGCVD 424
                   S  RH  HL+Q +R+L+       +   D  I AE +  A   LG+ITG V 
Sbjct: 360 PSAESPTISQARHRNHLTQCLRHLQNYLELCTNERHDVAIAAEEIHKAMRELGRITGHVS 419

Query: 425 VEQLLDIIFSKFCIGK 440
            +++LDIIF  FCIGK
Sbjct: 420 TDEILDIIFKNFCIGK 435


>gi|42525230|ref|NP_970610.1| tRNA modification GTPase TrmE [Bdellovibrio bacteriovorus HD100]
 gi|81829094|sp|Q6MGL5|MNME_BDEBA RecName: Full=tRNA modification GTPase mnmE
 gi|39577441|emb|CAE81264.1| probable tRNA modification GTPase trmE [Bdellovibrio bacteriovorus
           HD100]
          Length = 479

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 130/476 (27%), Positives = 231/476 (48%), Gaps = 41/476 (8%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---G 58
           + +K+TI A+ST      IS+IR+SGP    +   IC+     P    + +    +   G
Sbjct: 8   DRDKDTICAISTPHGVGGISVIRVSGPQTLNIVSKICQFLPAHPESHKVYFGNLKNSQTG 67

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L   F    SFTGE+  E   HG   +   IL +L  +   R A+ GEF+ RAF
Sbjct: 68  DEIDEVLATYFKEGRSFTGEEVIEISCHGSPLICQTILNQLVNL-GARPADRGEFTFRAF 126

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NGK+DL++AES+  LI S+++   +L++  + G LS    +  D +T I +  EA +DF
Sbjct: 127 MNGKLDLVQAESVLSLIESQSQQAAKLALRQLKGTLSHKLEEIEDDMTWILAHAEASIDF 186

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S  E ++      +   +  ++  +   ++  K+G ++++G++IV+ G  N GKSSL N 
Sbjct: 187 S-TEGIEVIEENVIQVRLKKIEAGLKELVATFKVGRLLKDGFRIVLTGLPNVGKSSLLNL 245

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVE 297
             + + AIVTDIPGTTRDV+  D   EG      DTAG+R E  D+VE+ GI++++    
Sbjct: 246 FLEDERAIVTDIPGTTRDVIHGDTTFEGVKFTFVDTAGLRDEATDLVERIGIQKSYEAQN 305

Query: 298 NADLILLLKEINS---KKEISFPKNID---FIFIGTK----------------------- 328
            +D++  + +I      +E+   +++D      +  K                       
Sbjct: 306 ESDVVFFVYDIEKGLGAEELQILESLDPAKTYILANKTDKIGGSKPLETVEKTLKNSKFF 365

Query: 329 ---SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
              +D  + +T     + +       E L + +K     + +     + S+ RH  +L++
Sbjct: 366 QKLADPAAFFTRRVFFVSALDKKVRSEVLKDLVKEFADLQVEN--TVLISNARHFENLTR 423

Query: 386 TVRY-LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +       S+  +  G + +A   + A +++ +  G    +Q++D +F +FCIGK
Sbjct: 424 ALENTQRSQSVVAQGLGAEFLALEFKEALIAIHETLGKRFDDQIMDRVFKEFCIGK 479


>gi|153952344|ref|YP_001397952.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. doylei
           269.97]
 gi|166200471|sp|A7H372|MNME_CAMJD RecName: Full=tRNA modification GTPase mnmE
 gi|152939790|gb|ABS44531.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 442

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 228/447 (51%), Gaps = 17/447 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            +TI A++T     +ISI+RLSG    +      +K K  PR A+    F  +  I+D+ 
Sbjct: 2   SDTIAAIATAHGVGSISIVRLSGERALEFALRFSRKTKLTPRHATFTKLFNQNNEIIDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++I F +P SFTGED  EF  HGG +V   +LEEL  +   R A  GEFS+RA  NGK+ 
Sbjct: 62  IMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARFALAGEFSKRACLNGKMT 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L+A ++ DLI S++ +  ++    M G L  L  +    L    +F+E  +D+++++  
Sbjct: 121 PLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLP 180

Query: 185 QNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +   K   +  +   +  +I + +SQ K G  +  G+KI I+G  N GKSSL NAL   
Sbjct: 181 SDLLEKISTMCEENSKILKEIYT-LSQSKKG--LIEGFKIAIIGKPNVGKSSLLNALLSY 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRD +     L  +L++I DTAGIRE+ D +E+ G+  +   +E+AD+I
Sbjct: 238 ERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDTIEQIGVALSKKSLEDADII 297

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG-LEE 353
           L + + +  ++    K        +    +I  KSDL + +    +      + +  +  
Sbjct: 298 LAVFDASRVQDKEDEKIFELLANTDKKIFWILNKSDLENVFKNTRNKNFIKLSAQKDIAL 357

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  ++++ L++        + S    +     +   +  A    ++  L++ A  L LA 
Sbjct: 358 LKEELQNYLNSF--DSEGIMVSSLDLINACKISSEAIFRAKELLEESSLELFAFELNLAI 415

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L + T     +++LD +F  FC+GK
Sbjct: 416 NELARFTKDFQRDEILDEMFGNFCLGK 442


>gi|257462448|ref|ZP_05626861.1| tRNA modification GTPase TrmE [Fusobacterium sp. D12]
          Length = 404

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 131/406 (32%), Positives = 220/406 (54%), Gaps = 19/406 (4%)

Query: 52  YFFGLDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANP 110
           Y +   G  I+D+ L+ +  +P ++T ED  E + HGG  +   ILE L      RLA  
Sbjct: 1   YGYIKQGENIVDEVLVSIMKAPNTYTREDIVEINCHGGYLITEKILE-LVLSSGARLAEV 59

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           GEF+RRAF +G+IDL +AE++ D+I  +TE    +S+  + G+L          + ++ +
Sbjct: 60  GEFTRRAFFHGRIDLTQAEAVMDIIHGKTEKSLSVSINQLRGDLKEKIISLKKAILNLAA 119

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            I   LD+ EE  ++    + +LN++  +  +I   IS  + G++I+ G K VI+G  N 
Sbjct: 120 HINVVLDYPEEG-IEEPIPENLLNNLRKVSIEIQELISSYQKGKMIKEGVKTVIIGKPNV 178

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSL N++ +++ AIVT + GTTRDV+   ++++G  + + DTAGIR+T D VE  G+ 
Sbjct: 179 GKSSLLNSILREERAIVTQVAGTTRDVIEEVINIKGIPLILVDTAGIRDTTDFVENIGVM 238

Query: 291 RTFLEVENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYSTY------TE 337
           ++   ++ ADL+L + + + +         IS  +N   I I  K+DL            
Sbjct: 239 KSKEFLQKADLVLFVLDASQELSKEDREIYISLQENQKVIGILNKTDLEKKIQVSSLSKI 298

Query: 338 EYDHLISSFTGEGLEELINKIKS-ILSNKFKKLPF-SIPSHKRHLYHLSQTVRYL-EMAS 394
           +    +S+    G+EE+  KI   IL  K ++     I ++ RH   L +T   +  + S
Sbjct: 299 KNWIEVSAMKCIGIEEMEEKIYQYILQEKVEENSQKLILTNIRHKAALEKTNGAIKNIFS 358

Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             E+   +D++A +++ A  SL +ITG +  E +LD IF  FC+GK
Sbjct: 359 TVEQGLPMDLMAVDIKEALDSLSEITGEISTEDVLDHIFHNFCVGK 404


>gi|149204377|ref|ZP_01881344.1| tRNA modification GTPase [Roseovarius sp. TM1035]
 gi|149142262|gb|EDM30309.1| tRNA modification GTPase [Roseovarius sp. TM1035]
          Length = 428

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 164/445 (36%), Positives = 248/445 (55%), Gaps = 28/445 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +T++A++T    + ++++R+SGP  F  C  IC    P PR + LR      G  LD+ L
Sbjct: 2   DTVYALATAQGKAGVAVVRVSGPRAFDACLHICG-DVPEPRNSVLRVLRDGQGAQLDQAL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F   +SFTGE++ EFH+HG +AVV  +L+ L  +  LRLA PGEF+RRA ENG++DL
Sbjct: 61  VLTFAEKQSFTGEETVEFHLHGSVAVVAAVLDVLGGIDGLRLAEPGEFTRRALENGRLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
              E LADLI +ETE QR+ ++   SG L      W   L    + +EA +DF++ E+V 
Sbjct: 121 ARVEGLADLIDAETEAQRKQALRVFSGALGGKCEAWRGLLLRAVALLEATIDFAD-EEVP 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EV   +  +   +   I+   +GE IR+G+++ I+G  N GKS+L N+LA ++ A
Sbjct: 180 VDVSFEVTALVREVAEALEREIAGSWVGERIRSGFEVAIIGAPNVGKSTLLNSLAGREAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I ++  GTTRDV+ + +DL G  V + DTAG+RET D VE  GI R     + ADL + L
Sbjct: 240 ITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETVDAVESIGIARARARADAADLRVFL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            E   K E+      D I +  K+DL        ++ IS  TG G+ EL+ +I  +LS +
Sbjct: 300 VEAGEKPEMD--PREDDIILWAKADLLGRV----ENAISGKTGAGVSELVARIGQVLSKR 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII----------AENLRLASVS 415
                  I +  RH   + + +  L+ A        L+++          AE LR+A  +
Sbjct: 354 VA--GAGIATRARHRQAMERGLGALQAA--------LELLPYGEASAEVAAEELRVAIRA 403

Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440
           L  + G +DVE +LD IF+ FC+GK
Sbjct: 404 LDSLVGRIDVEMVLDEIFASFCLGK 428


>gi|203287638|ref|YP_002222653.1| thiophene and furan oxidation protein [Borrelia recurrentis A1]
 gi|226704781|sp|B5RQZ8|MNME_BORRA RecName: Full=tRNA modification GTPase mnmE
 gi|201084858|gb|ACH94432.1| thiophene and furan oxidation protein [Borrelia recurrentis A1]
          Length = 464

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 227/464 (48%), Gaps = 31/464 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGLDGRI 60
            +++ I A++T    SA+ +IR SG S  +    +     K       ++ Y + LD   
Sbjct: 6   QKEDDIVALATPFFSSALCVIRSSGVSAIEKFSTMFSDPSKLLEASGHTIHYGYILDNET 65

Query: 61  ---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              LD+ ++ ++ +P+SFTG+DS E   HG +  +  I++   K+   R+A PGEF+ R+
Sbjct: 66  KEKLDEVVVCLYRAPKSFTGQDSIEVMAHGSLIGIRRIIDFFLKV-GFRMAEPGEFTLRS 124

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F  GK+DL +AE++ +LIS++T     L++  +SG L          + +  S I   LD
Sbjct: 125 FLAGKLDLTKAEAINELISAKTRQVHALAVNKLSGSLFDKIDLIKKDILNFLSAISVYLD 184

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +  +++        +L      K+++   I        + NG  +V+ G  N GKSSLFN
Sbjct: 185 YETDDNEVVIPVDIILKS----KSELERLIDSYDTARKLENGVTLVLAGSVNVGKSSLFN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L K+D AIV+   GTTRD +    + +G L  + DTAG+RET D VE+ GI R+   ++
Sbjct: 241 LLLKEDRAIVSSYAGTTRDYIQASFEFDGILFNVFDTAGLRETSDFVEQLGIVRSNSLIK 300

Query: 298 NADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYST-----------YTEEY 339
            A LI  + +++ K          ++ ++   +F+  K DL                   
Sbjct: 301 EASLIFYVVDLSGKLTDDDLKFIDAYKEDSRVLFVLNKVDLEQNNQTVEFFNSNDIVSLN 360

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVRY-LEMASLN 396
              IS+ T  G+  L ++I+S ++  + K      + S  R    L +     +E+ S  
Sbjct: 361 TVKISTKTLFGINSLYDRIRSFIAVDYMKTSDYDIVISSTRQAALLKRAYALIIELLSKI 420

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E++   D++A ++      LG+ITG V  + +L+ +F  FC+GK
Sbjct: 421 EQNISYDMLAFDVYEVVNVLGEITGEVTSDDVLNNMFKNFCLGK 464


>gi|224534206|ref|ZP_03674784.1| tRNA modification GTPase TrmE [Borrelia spielmanii A14S]
 gi|224514308|gb|EEF84624.1| tRNA modification GTPase TrmE [Borrelia spielmanii A14S]
          Length = 464

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 138/462 (29%), Positives = 238/462 (51%), Gaps = 31/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGR--- 59
            + I A++T  L SA+ +IR SG S       I   +      A  ++ Y + LD     
Sbjct: 8   DDDIVALATPFLSSALCVIRSSGASSISKFSKIFSNQAALNSAAGNTIHYGYILDNENNC 67

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ ++ ++ +P+SFTG+DS E   HG +  +  I++ L      R+A PGEF+ R+F 
Sbjct: 68  KVDEVVVCLYRAPKSFTGQDSIEVIAHGSVIGIKKIID-LFLKSGFRMAEPGEFTFRSFL 126

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
             KIDL +AE++ ++I ++T     L++  +SG L          + +  S +   LD+ 
Sbjct: 127 AKKIDLTKAEAINEIIFAKTNKTYSLAVNKLSGALFVKIDTIKKHILNFLSAVSVYLDYE 186

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            ++         +L+     K ++   I+  K+ E I +G  +V+ G  NAGKSSLFN  
Sbjct: 187 VDDREIGIPFDLILSS----KAELKKLINSYKVYEKIDHGITLVLAGSVNAGKSSLFNLF 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            KKD +IV+  PGTTRD +    +L+G L  I DTAG+R+ D+ VE+ GI+++   ++ A
Sbjct: 243 LKKDRSIVSSYPGTTRDYIEASFELDGVLFNIFDTAGLRDADNFVERLGIEKSNSLIKEA 302

Query: 300 DLILLLKEINS---KKEISFPK----NIDFIFIGTKSDL-YSTYTEEYD----------H 341
            L++ + +++S   + ++ F      N   +F+  K DL  +  TEE+            
Sbjct: 303 SLVIYVIDVSSDLTRDDLLFIDSNKSNAKILFVLNKIDLKINKSTEEFVRSNVLNSSNLI 362

Query: 342 LISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
           +IS    EG++ L +KIK+++S +     L   I S +R +  L +     L++ S  ++
Sbjct: 363 MISIKDLEGIDILYDKIKTLISYEKVEIGLDDIIISSRRQIQLLEKAYALILDLLSKIDR 422

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D++A +       LG+ITG V  E +L+ +F  FC+GK
Sbjct: 423 QVSYDMLAFDAYEIINCLGEITGEVSSEDVLNNMFKNFCLGK 464


>gi|269791929|ref|YP_003316833.1| tRNA modification GTPase TrmE [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269099564|gb|ACZ18551.1| tRNA modification GTPase TrmE [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 450

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 133/455 (29%), Positives = 221/455 (48%), Gaps = 23/455 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDG 58
            +++ I A+ST      I++IRLSG    QV + + + + P     P      +     G
Sbjct: 2   RDEQVIAAISTPFGQGGIAVIRLSGRGSAQVVDRVFRGRSPLSSSPPWTMRHGHLVDPRG 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L + F +P+S+TGEDSAE H HGG  V    LE L      RLA  GEF+RRA 
Sbjct: 62  NPIDEVLAVHFKAPKSYTGEDSAEVHCHGGPLVAQMCLEALISA-GARLAERGEFTRRAV 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            N ++DL  A ++  L+S ++      +M  +SG       + +  LT   S +EA LD 
Sbjct: 121 INRRMDLSAASAVMALVSGQSPKAVEAAMGSLSGATRRAMEELMRDLTRACSHLEATLDM 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E+E +     + +  D+  +   I     +G  G  +  G ++ ++G  N GKSSL N+
Sbjct: 181 PEDE-IPPLDWERLREDLSRIARGIRDLHQRGLAGMALSQGVQVTLVGRPNVGKSSLLNS 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L+++  AIVT IPGTTRDV+   +   G  +K+ DTAGIR+++D +E  G+K     +  
Sbjct: 240 LSRQARAIVTPIPGTTRDVVEAAVIHRGVPIKLLDTAGIRDSNDPIEALGVKLARETMLT 299

Query: 299 ADLILLLKEINSKK-----EISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLISS 345
           ADL +L+ + +S       E+    ++       K+DL +  + +         +  +S+
Sbjct: 300 ADLRVLVLDGSSPPHREDLELLGSLDMPAAAALNKADLGTDPSWDQVLRDARVPNVTLSA 359

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
            +G+G+EEL + +   +      +  ++   +  L  LS+    L+ A        LD  
Sbjct: 360 LSGKGVEELKDLMVRSIC-SNPAVDGAVTMFRHQLDALSRAAEALDGA---LSSPYLDAT 415

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A+    A   L    G    E++L+ +F  FC+GK
Sbjct: 416 AQLALEAQRHLASALGLDPTEEVLEAVFRNFCVGK 450


>gi|1199801|emb|CAA64971.1| thdF [Borrelia burgdorferi]
 gi|2689169|emb|CAA06004.1| thdF [Borrelia burgdorferi]
          Length = 463

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 235/462 (50%), Gaps = 32/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
            + I A++T  L SA+ +IR SG S       I          +     +G      +G 
Sbjct: 8   DDDIVALATPFLSSALCVIRSSGASSISKFSKIFSNHSALNSASGNTIHYGYILDSENGC 67

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ ++ ++ +P+SFTG+D+ E   HG +  +  I++ L      R+A PGEF+ RAF 
Sbjct: 68  KVDEVVVCLY-APKSFTGQDAIEVMAHGSVIGIKKIID-LFLKSGFRMAEPGEFTLRAFL 125

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
             KIDL +AE++ ++I ++T     L++  +SG L          + +  S +   LD+ 
Sbjct: 126 AKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGALFVKIDAIKKSILNFLSAVSVYLDYE 185

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            ++   +     +L+     K ++   I+  K+ E I NG  +V+ G  NAGKSSLFN  
Sbjct: 186 VDDHEISIPFDLILSS----KAELKKLINSYKVYEKIDNGVALVLAGSVNAGKSSLFNLF 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
            KKD +IV+  PGTTRD +    +L+G L  + DTAG+R+ D+ VE+ GI+++   ++ A
Sbjct: 242 LKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNSLIKEA 301

Query: 300 DLILLLKEINS---KKEISFPK----NIDFIFIGTKSDL-YSTYTEEYD----------H 341
            L++ + +++S   K +  F      N   +F+  K DL  +  TEE+            
Sbjct: 302 SLVIYVIDVSSNLTKDDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSKVLNSSNLI 361

Query: 342 LISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEK 398
           +IS+   EG++ L +KI++++S +     L   I S  R +  L +     L++ S  ++
Sbjct: 362 MISTKNLEGIDILYDKIRALISYERVEIGLDDIIISSNRQMQLLEKAYALILDLLSKIDR 421

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 422 QVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 463


>gi|51598440|ref|YP_072628.1| tRNA modification GTPase TrmE [Borrelia garinii PBi]
 gi|81610174|sp|Q662I5|MNME_BORGA RecName: Full=tRNA modification GTPase mnmE
 gi|51573011|gb|AAU07036.1| thiophene and furan oxidation protein [Borrelia garinii PBi]
          Length = 464

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 238/464 (51%), Gaps = 31/464 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGR- 59
              + I A++T  L SA+ +IR SG S       I             ++ Y + LD   
Sbjct: 6   QRDDDIVALATPFLSSALCVIRSSGASSIPKFSKIFSNHSALNSAPGNTIHYGYILDNEN 65

Query: 60  --ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
              +D+ ++ ++ +P+SFTG+DS E   HG +  +  I++ L      R+A PGEF+ R+
Sbjct: 66  NCKVDEVVVCLYRAPKSFTGQDSIEVIAHGSVIGIKKIID-LFLKSGFRMAEPGEFTLRS 124

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F   KI L +AE+L ++I + T     L++  +SG L +        L +I S + A LD
Sbjct: 125 FLAKKIALTKAEALHEIIFATTNKTYSLAVTPLSGALFANLDAIQRCLLNILSAVSAYLD 184

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +  ++   +     +LN     K ++   I+  K+ E I +G  +V+ G  NAGKSSLFN
Sbjct: 185 YEVDDHEISIPFDLILNS----KAELKKLINSYKVYEKIDHGVTLVLAGSVNAGKSSLFN 240

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
              KKD +IV+  PGTTRD +    +L+G L  + DTAG+++ D+ VE+ GI+++   ++
Sbjct: 241 MFLKKDRSIVSSYPGTTRDYIEATFELDGILFNLFDTAGLKDADNFVERLGIEKSNSLIK 300

Query: 298 NADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDL-YSTYTEEYD--------- 340
            A L++ + +++S   +++  F      N   +F+  K DL  +  TEE+          
Sbjct: 301 EASLVIYVIDVSSNLPREDFLFIDSNKSNSKILFVLNKIDLNINKSTEEFVRSSVLNSSN 360

Query: 341 -HLISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRY-LEMASLN 396
             +IS+   EG++ L +KIK+++S +     L   I S  R +  L +     L++ +  
Sbjct: 361 LIMISTKNLEGIDILYDKIKTLISYERVEIGLDDIIISSSRQMQLLEKAYALVLDLLNKI 420

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++    D++A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 421 DRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464


>gi|282934246|ref|ZP_06339523.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1]
 gi|281301720|gb|EFA93987.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1]
          Length = 332

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 183/333 (54%), Gaps = 10/333 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57
            E +TI A+ST      ISI+RLSG    ++   + K K    + AS    +G       
Sbjct: 5   TEFDTIAAISTPIGEGGISIVRLSGEDAVKIANKLFKGKD-LSKVASHTINYGHIIDPET 63

Query: 58  GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117
            +++D+ ++ V  +P++FT ED  E + HGGI V N IL+ L K    R+A  GEF++RA
Sbjct: 64  SKVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLK-HGARMAEAGEFTKRA 122

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AES+ D++ ++T+  R+++M  + G L         ++    + +E ++D
Sbjct: 123 FVNGRIDLTQAESVMDIVRAKTDKARQVAMNQLEGGLLDKIRNMRQEILDTLANVEVNID 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E  D    ++ ++      +   I+  +     G+I+RNG    I+G  N GKSSL N
Sbjct: 183 YPEY-DADQVTATQMQETSKKVIEAINRLLKTANQGKIMRNGLATAIVGRPNVGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L + D AIVTD+ GTTRD L   + + G  +K+ DTAGI  T+D VEK G++R+   +E
Sbjct: 242 YLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTEDKVEKIGVERSKKAIE 301

Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
            ADL+LLL  +N+ + ++        +   K +
Sbjct: 302 QADLVLLL--LNASEALTTEDEKLIDYTKNKKE 332


>gi|89052690|ref|YP_508141.1| tRNA modification GTPase TrmE [Jannaschia sp. CCS1]
 gi|122499793|sp|Q28VZ6|MNME_JANSC RecName: Full=tRNA modification GTPase mnmE
 gi|88862239|gb|ABD53116.1| tRNA modification GTPase trmE [Jannaschia sp. CCS1]
          Length = 426

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 152/436 (34%), Positives = 234/436 (53%), Gaps = 12/436 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA +T    + ++IIR+SGP  F+V   +        R A LR      G +LD+GL
Sbjct: 2   QTIFAQATARGKAGVAIIRISGPDAFEVGRCLLGSLPDAGRFA-LRDVRTPLGELLDRGL 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++VF +P SFTGED+ E  +HG +AVV  +   +      RLA+ GEF++RA  N  +DL
Sbjct: 61  VLVFKAPASFTGEDTVELQLHGSVAVVRAVEGAIRSTGLARLADAGEFTQRALLNDMLDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E L  LI SETE QR+++     G LS    +W   +    + +EA +DF +E+   
Sbjct: 121 TQVEGLGRLIDSETEAQRKVAQASFEGGLSDKAERWRHLMIRAAALLEASIDFVDEDVPV 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +   +   + ++ L  D++  ++   + E + +G+++ ILG  NAGKS+L N LA +++A
Sbjct: 181 DVVPEVQ-SILMGLDTDLAKEVTGAVVAERLHDGFEVAILGAPNAGKSTLLNVLADREIA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +D+PGTTRDV+   LD+ G  V   DTAGIR+T D++EK G++R       AD+ +LL
Sbjct: 240 ITSDVPGTTRDVIEARLDVSGLPVTFLDTAGIRDTVDVIEKIGVQRAIDRALAADVRILL 299

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            EI+         +        K+DL           IS  TG G++ L+  I+ +LS K
Sbjct: 300 -EIDDWILPDVLSDTIDFRYRAKADLSD------GEGISGRTGVGIDRLLTDIEGVLSEK 352

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSLGKITGCVD 424
              +  ++    R    +      L+           L++ AE++R A  SL  + G VD
Sbjct: 353 MSAVRSAVTD--RQRGGIEAARVSLDAGVTVLSGTAELELAAEHIRHAQRSLDSVIGRVD 410

Query: 425 VEQLLDIIFSKFCIGK 440
           VE LL  IFS+FCIGK
Sbjct: 411 VENLLGEIFSRFCIGK 426


>gi|94502356|ref|ZP_01308823.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|94451088|gb|EAT14046.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
          Length = 429

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 141/432 (32%), Positives = 222/432 (51%), Gaps = 20/432 (4%)

Query: 26  SGPSCFQVCEFIC---KKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAE 82
           SG +  ++ + I     K +       L Y      +I+DK L+ +F  P+S+TGED  E
Sbjct: 1   SGNNSIKIIKKIFCSFSKNQIETNYIHLGYIK-YKKQIIDKVLIFLFKKPKSYTGEDIVE 59

Query: 83  FHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ 142
              HG I + N +L  +      RLANPGEF+ RAF NGKIDL +AES+ D+++SET   
Sbjct: 60  ISCHGSIYIQNKLLSIII-DQGARLANPGEFTLRAFLNGKIDLCQAESILDIVNSETFFS 118

Query: 143 RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND 202
            + ++  M G +S L  +   ++ ++ S IE +LDFSE E+    +  E    +  +   
Sbjct: 119 HKFAINQMRGNISLLIRKLSKEIINLLSLIEFELDFSE-ENCNFINYLEFKKMLYNIIKK 177

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + + I   K+G  ++NG  + I+G  N GKS+LFN L K + +IV++I GTTR+ +   L
Sbjct: 178 LKTLIRSFKIGNALKNGISVSIIGCPNVGKSTLFNKLLKYERSIVSNIAGTTRNYIEDSL 237

Query: 263 DLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI-----SF 316
            + G   +  DTAGI   T D +EK GIK+T+ ++  +DLIL + +  ++K I     S 
Sbjct: 238 IINGIKFRFIDTAGINNNTKDYIEKLGIKKTYSKINKSDLILYVFDDLNEKFILKKVKSL 297

Query: 317 PKNIDFIFIGTKS---DLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKL 369
            +      I       DL     +E+++     IS+  G G+  L+++I           
Sbjct: 298 QEKYPKKKIFIIINKYDLIKKKIKEFNYKKIFKISAKYGYGVNNLLSEITFFSKKITSLK 357

Query: 370 PFSIPSHK-RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428
             +I   + RH     + + YL     N      + ++ ++R A   LGK+TG V  E +
Sbjct: 358 ENTIVITQTRHYESFKKAIFYLYKVKKNLYSISPEFLSIDIRTALDYLGKVTGEVTNEDI 417

Query: 429 LDIIFSKFCIGK 440
           L  IFSKFCIGK
Sbjct: 418 LSNIFSKFCIGK 429


>gi|241950667|ref|XP_002418056.1| GTPase MSS1, mitochondrial precursor [Candida dubliniensis CD36]
 gi|223641395|emb|CAX43355.1| GTPase MSS1, mitochondrial precursor [Candida dubliniensis CD36]
          Length = 536

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 154/484 (31%), Positives = 260/484 (53%), Gaps = 46/484 (9%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFF------ 54
           N  K T+FA+ST    SAI+++R+SGP    +   +    K P  R AS+R  +      
Sbjct: 54  NPLKPTVFALSTKFGKSAIAVVRISGPQSKYIYHKLTNSTKPPKNRIASVRKLYSFGHRC 113

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLA 108
                 LD+ L +  P P+++TGED  E H+HGG++++  +L+ +  + +      +R A
Sbjct: 114 NQKSVFLDEALTLFLPGPKTYTGEDLLELHLHGGVSIIKSVLQSIKNLHDPSNGIMIRQA 173

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
           + GEFS++AF NG++DL E E + D+I++ETE QR  S+   SG+    +  W +++ + 
Sbjct: 174 DRGEFSKQAFYNGRLDLTELEGINDMINAETESQRLASLASSSGQTKIEFMNWRNEIVNQ 233

Query: 169 RSFIEADLDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            + +   +DF E+ D++      ++V  +I  ++ +I +++ + K  +I+ NG ++ +LG
Sbjct: 234 MANLTMIIDFGEDHDIEETDQIIQDVKENIAKIELEIKAYLLKVKSSQILLNGIQLALLG 293

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIV 284
             NAGKSS+ N LA KD AIV++I GTTRD+L I L++ GY V + DTAGIR  E  D +
Sbjct: 294 PPNAGKSSILNILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFEEADSI 353

Query: 285 EKEGIKRTFLEVENADLILLLKE----------INSKKEISFPKNIDFIFIGTKSDLYST 334
           E+EGIKR       ADL++++ +          +    E    +N   + +  K DL+ +
Sbjct: 354 EQEGIKRAKKRSMLADLVIVVLDPISVEKDPLELKEHLEALVKENKQILIVLNKQDLFVS 413

Query: 335 YTEE--------------YDHLISSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRH 379
            +EE              Y +++S  TG G++ L   +     +  + +    I    R 
Sbjct: 414 RSEEMISKYSQVFNLPKNYFYVVSCSTGSGIDNLQKALIEKFKDLSQSETSDPIIVSSRV 473

Query: 380 LYHLSQTVR--YLEMASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKF 436
              L   +   + E     + D  L + A+ LR +   +GKITG  +D+E++LD++FS F
Sbjct: 474 QDILENDILFGFKEFYQWADADDVL-LAADCLRQSVDGIGKITGQSIDLEEILDVVFSSF 532

Query: 437 CIGK 440
           CIGK
Sbjct: 533 CIGK 536


>gi|297570497|ref|YP_003691841.1| tRNA modification GTPase TrmE [Desulfurivibrio alkaliphilus AHT2]
 gi|296926412|gb|ADH87222.1| tRNA modification GTPase TrmE [Desulfurivibrio alkaliphilus AHT2]
          Length = 474

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 142/475 (29%), Positives = 220/475 (46%), Gaps = 52/475 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPS-----------CFQVCEFICKKKKPF---PRKASLRY 52
           TI A++T             G               ++   + +  +      R   LRY
Sbjct: 11  TIAAIATPP-----------GAGGIGIIRISGSRAREILLQLFRPARGEVASGRSHQLRY 59

Query: 53  FFGLD---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109
            + ++   GR LD+ + +   +P ++T ED  E H HGG  V+  IL  +     +R A 
Sbjct: 60  GWIVEPESGRPLDEVMAVYMAAPATYTREDVVEIHGHGGYVVLREILGLILAREGVRAAE 119

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
            GEF++RAF NG+IDL  AE++ D++++ T     L+M  + G L          L  + 
Sbjct: 120 AGEFTKRAFLNGRIDLTRAEAVLDVLNAGTREGLNLAMSQLQGGLQQQLEPVRRALLEVL 179

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           + +E  +DF +E+     ++       L ++  +   + +   G I R G  +VILG  N
Sbjct: 180 AVVEVAIDFPDEDAEIIDTAALGRRLELEVRQPLQELLERADRGRIFREGATVVILGRPN 239

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKSSL NAL + + AIVT IPGTTRD +   L++ G  ++I DTAGIRET + VE  GI
Sbjct: 240 VGKSSLLNALLQDERAIVTAIPGTTRDTIEECLNIHGMPLRIVDTAGIRETTEEVEGIGI 299

Query: 290 KRTFLEVENADLILLLKEINSKKEISFP------KNIDFIFIGTKSDLYSTYTEEYDHL- 342
           +R+   V  ADL+LLL E  S+            +    + +  K DL    +       
Sbjct: 300 ERSRRRVAEADLVLLLVEAGSEPSSEDMALFDSVREKKVLVVVNKLDLLGDASPAAAEAA 359

Query: 343 ---------------ISSFTGEGLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHLSQT 386
                          IS+    GLE+L + +  ++S    + P  +   + RH   L++T
Sbjct: 360 LAAWRHRFPGRELTGISARARVGLEQLEDLVFRLISGDEPRDPGYACVPNARHRAALART 419

Query: 387 VRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  LE            +++A  L+    SLG+I G V  E+LLD IFS FCIGK
Sbjct: 420 LPALERVQQGLAAGLAPELLAVELQACLGSLGEIIGEVGSEELLDTIFSSFCIGK 474


>gi|4006|emb|CAA49238.1| GTPase [Saccharomyces cerevisiae]
          Length = 526

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 166/494 (33%), Positives = 251/494 (50%), Gaps = 55/494 (11%)

Query: 2   NHEKETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDGR 59
             ++ TI+A+ST A   SAI IIR+SG     +   +       P RKA LR  +     
Sbjct: 33  TFQQPTIYALSTPANQTSAIRIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSC 92

Query: 60  ------------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--- 104
                       +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  + +   
Sbjct: 93  SVKPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSS 152

Query: 105 ---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQW 161
              +R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W
Sbjct: 153 GKDIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENW 212

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF----LKNDISSHISQGKLGEIIR 217
            + +    + + A +DF+++   +  ++ E+ +++      L++ I + + + +   I++
Sbjct: 213 RETIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTILQ 272

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAGI
Sbjct: 273 NGIKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGI 332

Query: 278 RET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----------NIDFIFI 325
           RE   D +E  GI R   +   +DL L + +     ++               N   I +
Sbjct: 333 REKSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIV 392

Query: 326 GTKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             KSDL S                ++     +S  T EG+E LI+ + S   +  +    
Sbjct: 393 VNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLISTLTSNFESLSQSSAD 452

Query: 372 S--IPSHKRHLYHLSQTVRY--LEMASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVE 426
           +  +   KR    L   V Y   E     +    + +  ENLR AS  + KITG  + +E
Sbjct: 453 ASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAIGIE 512

Query: 427 QLLDIIFSKFCIGK 440
           ++LD +FSKFCIGK
Sbjct: 513 EILDSVFSKFCIGK 526


>gi|50547191|ref|XP_501065.1| YALI0B18612p [Yarrowia lipolytica]
 gi|49646931|emb|CAG83318.1| YALI0B18612p [Yarrowia lipolytica]
          Length = 481

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 156/481 (32%), Positives = 253/481 (52%), Gaps = 42/481 (8%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK----ASLRYFFGL 56
           + + K TI+A+S+ +  +A+SIIR+SGP    V + +  + K  P +    A+L+  F  
Sbjct: 2   LRNTKSTIYALSSASGRAAVSIIRVSGPDTSTVYKQLTNRTKTPPHRVATLATLKQPFSN 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-----LRLANPG 111
             ++LD  L + F  P+S++GED  E HVHGG AVV  +L+ + ++       +R A PG
Sbjct: 62  PPKVLDHALTLFFNGPKSYSGEDLLELHVHGGPAVVRAVLDSIQRVKPSSGVPIRYAEPG 121

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EFS+RAF NGK+D+ + E +  +I +ETE QR+ S+E  SG    +Y  W + +    + 
Sbjct: 122 EFSKRAFYNGKLDMTQIEGIGSMIEAETESQRQASLEASSGHSKKVYEAWREGIVENMAL 181

Query: 172 IEADLDFSEEE---DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           + A +DFS++    D       +   ++  L  DI +H++Q +  EI+R+G  + +LG  
Sbjct: 182 LTALIDFSDDNQGIDSGEVLVGKTKENVGRLLKDIKNHLAQVQRSEILRSGIVMSLLGAP 241

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEK 286
           NAGKSSL N LAK++ AIV++  GTTRDV+ I LD+ GY V + DTAG+R  E   +VEK
Sbjct: 242 NAGKSSLLNILAKRNAAIVSEEAGTTRDVVEIGLDVAGYKVVLGDTAGLRGGEQVGMVEK 301

Query: 287 EGIKRTFLEVENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTY-- 335
           EGIKR     + + +I+ +   +         ++ +         +    K+DL   +  
Sbjct: 302 EGIKRARERFQKSHMIMAVLPADGCDHSSDIIAELKQLHAAEKQIVVAINKTDLVEDHVV 361

Query: 336 -------------TEEYDHLISSFTGEGLEELINKIKSILSN-KFKKLPFSIPSHKRHLY 381
                          +    +S     GLE L+ K+ S  S     +    + + +R   
Sbjct: 362 EAFKNRLMEEIGLPRDSIIPVSCIASSGLETLLAKLSSEFSKITTIEGSDPVLASQRVKD 421

Query: 382 HLSQT-VRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIG 439
           +L  T +  LE     + +  +    E LR+A+  +G ITG  + +E++L  +FSKFCIG
Sbjct: 422 NLIATVIPALETFMEYDLEA-VVFATEELRMAAEGIGMITGQGIGIEEVLGAVFSKFCIG 480

Query: 440 K 440
           K
Sbjct: 481 K 481


>gi|326404882|ref|YP_004284964.1| tRNA modification GTPase MnmE [Acidiphilium multivorum AIU301]
 gi|325051744|dbj|BAJ82082.1| tRNA modification GTPase MnmE [Acidiphilium multivorum AIU301]
          Length = 433

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 169/435 (38%), Positives = 251/435 (57%), Gaps = 8/435 (1%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           + IFA ++G    AIS++RLSG    +V   +     P PR+ASLR F      I+D+GL
Sbjct: 7   DVIFAPASGVG-GAISLLRLSGAGVARVIGALAGS-LPAPRRASLRSFRDGRRGIIDRGL 64

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+ FP P S TGED AEFH+HGG AV   I   L  +   R A PGEFSRRAF N ++DL
Sbjct: 65  LLWFPGPASVTGEDYAEFHLHGGRAVRAAITAALLDL-GARPAEPGEFSRRAFLNSRLDL 123

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           LEAE +ADLI +ETE QR+L+++   G +S     W + L  + + + A +DF++ ED+ 
Sbjct: 124 LEAEGIADLIDAETEAQRQLALDLAGGAMSRAVAAWREALIGLMAQLAALIDFAD-EDLP 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                 +L  +  L+++I + I  G   E +R G +IV+LG  NAGKS+L NALA ++VA
Sbjct: 183 AEVEAAMLASMARLRDEIVAAIGAGLAAERLREGVEIVVLGAPNAGKSTLVNALAGEEVA 242

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IV+DIPGTTRD + + LDL G  V++ DTAG+R +DD +E EG++R       ADL++L 
Sbjct: 243 IVSDIPGTTRDAIGVRLDLGGVPVRLVDTAGLRRSDDAIEAEGVRRAEAHARRADLLILC 302

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                      P ++  + I TK+DL           +S+ TG GL +L+  +++ +   
Sbjct: 303 GAAPDFAFPDAPADVPALRIATKADLGGAVPAAM-LAVSARTGAGLADLLAALRARVEAL 361

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425
            ++         R +  L      L+ A   +     ++ AE ++ A+V+L ++TG + V
Sbjct: 362 VERGAGPALPRPRQIACLRDVAAALDRALAIDV---PELRAEEMQAAAVALARLTGTIGV 418

Query: 426 EQLLDIIFSKFCIGK 440
           E +LD +FS FCIGK
Sbjct: 419 EDVLDQVFSSFCIGK 433


>gi|148261393|ref|YP_001235520.1| tRNA modification GTPase TrmE [Acidiphilium cryptum JF-5]
 gi|205829064|sp|A5G169|MNME_ACICJ RecName: Full=tRNA modification GTPase mnmE
 gi|146403074|gb|ABQ31601.1| tRNA modification GTPase trmE [Acidiphilium cryptum JF-5]
          Length = 433

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 169/436 (38%), Positives = 251/436 (57%), Gaps = 8/436 (1%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            + IFA ++G    AIS++RLSG    +V   +     P PR+ASLR F      I+D+G
Sbjct: 6   SDVIFAPASGVG-GAISLLRLSGAGVARVIGALAGS-LPAPRRASLRSFRDGRRGIIDRG 63

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           LL+ FP P S TGED AEFH+HGG AV   I   L  +   R A PGEFSRRAF N ++D
Sbjct: 64  LLLWFPGPASVTGEDYAEFHLHGGRAVRAAITAALLDL-GARPAEPGEFSRRAFLNSRLD 122

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           LLEAE +ADLI +ETE QR+L+++   G +S     W + L  + + + A +DF++ ED+
Sbjct: 123 LLEAEGIADLIDAETEAQRQLALDLAGGAMSRAVAAWREALIGLMAQLAALIDFAD-EDL 181

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                  +L  +  L+++I + I  G   E +R G +IV+LG  NAGKS+L NALA ++V
Sbjct: 182 PAEVEAAMLASMARLRDEIVAAIGAGLAAERLREGVEIVVLGAPNAGKSTLVNALAGEEV 241

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+DIPGTTRD + + LDL G  V++ DTAG+R +DD +E EG++R       ADL++L
Sbjct: 242 AIVSDIPGTTRDAIGVRLDLGGVPVRLVDTAGLRRSDDAIEAEGVRRAEAHARRADLLIL 301

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                       P ++  + I TK+DL           +S+ TG GL +L+  +++ +  
Sbjct: 302 CGAAPDFVVPDAPADVPALRIATKADLGGAVPAAM-LAVSARTGAGLADLLAALRARVEA 360

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
             ++         R +  L      L+ A   +     ++ AE ++ A+V+L ++TG + 
Sbjct: 361 LVERGAGPALPRPRQIACLRDVAAALDRALAIDV---PELRAEEMQAAAVALARLTGTIG 417

Query: 425 VEQLLDIIFSKFCIGK 440
           VE +LD +FS FCIGK
Sbjct: 418 VEDVLDQVFSSFCIGK 433


>gi|262200042|ref|YP_003271251.1| tRNA modification GTPase TrmE [Haliangium ochraceum DSM 14365]
 gi|262083389|gb|ACY19358.1| tRNA modification GTPase TrmE [Haliangium ochraceum DSM 14365]
          Length = 474

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 220/475 (46%), Gaps = 37/475 (7%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEF-ICKKKKPFPRKA-SLRYFFGLDG 58
           ++ +++TI A++T      + ++R+SGP    V    + +     P +A         DG
Sbjct: 2   LSAQRDTIAAIATPTGTGGVGVVRISGPQAGAVLGRVLARAPDDLPDRALVYGLARDRDG 61

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             LD  L ++  +P SFTGED AE H HGG   ++ +L  + +    R A PGEF+RRAF
Sbjct: 62  GRLDDVLAVLMRAPRSFTGEDVAEIHGHGGPVNMSRLLRAVLE-QGARPAEPGEFTRRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           ENGK+DL+ AE++ D+I + +E   RL+   ++G+          + T + + +EA +DF
Sbjct: 121 ENGKLDLVRAEAILDVIEAGSERAWRLAQAQLAGDFGQQVTALRARATSLLAEVEACIDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E E     ++ EV      L  ++S       LG  +R+G ++ ++G  NAGKSS+FNA
Sbjct: 181 PE-EGEDYLATSEVAARCRTLGRELSGFAGTFALGRALRSGIEVALVGPVNAGKSSIFNA 239

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-----TDDIVEKEGIKRTF 293
           L   + AIV   PGTTRD +      +G  V + DTAG R+       + +E  GI+   
Sbjct: 240 LIGSERAIVDAAPGTTRDYVEARAVWDGVPVTVIDTAGERDVAGSQAGERIEARGIEMGR 299

Query: 294 LEVENADLILLLKEI--------------------------NSKKEISFPKNIDFIFIGT 327
                ADL + L+                            ++    +   +   + + +
Sbjct: 300 ARAAQADLRVHLRSATGAGGAQGEGGGDGADRAHGAAGTQDDAGAWSAASADERELQVWS 359

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHL-SQ 385
           K DL +    +     S+ TG GL+ L   I   +     +     + + +R    L   
Sbjct: 360 KCDLGAPADGDPRPRTSARTGAGLDALKQLILERVCGASLEADEGHVVTSERQRDLLAHA 419

Query: 386 TVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +   A   +    ++++A  +R A+  L ++ G    E++LD +F +FCIGK
Sbjct: 420 AAAFERAAQARDARAPIEVLALEIREATEQLARLMGERVGEEVLDDLFGRFCIGK 474


>gi|145347727|ref|XP_001418313.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578542|gb|ABO96606.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 525

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 125/457 (27%), Positives = 204/457 (44%), Gaps = 43/457 (9%)

Query: 24  RLSGPSCFQVCEFICKKKKPFPR---------------KASLRYFFGLDGRILDKGLLIV 68
           RLSG     +   + ++     R               KA+       DG I+D+ + + 
Sbjct: 72  RLSGSDARAIGGRVFRRAGGATRASASANAANAFDESHKATYGVVVDGDGEIIDEVIALA 131

Query: 69  FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEA 128
           F +P S+T ED  E H HGG   V   +         RLA  GEF+ RAF NG++DL +A
Sbjct: 132 FIAPRSYTAEDVVELHCHGGAVCVQRAMARCL-DEGARLARNGEFTLRAFLNGRLDLTQA 190

Query: 129 ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS 188
           E++  L+S++T      ++  M G L++   +       + + +EA LDF +  ++    
Sbjct: 191 EAVHALVSAKTTAAADSALAAMRGGLTTPVSEARRACVDLLAELEARLDFDD--EMVPLD 248

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
            + +       +  I   ++  K G ++  G  + I+G  N GKS L NAL + + +IVT
Sbjct: 249 VRAIEAKAAGARETIRKVLTTAKRGALLETGVTVAIVGRPNVGKSRLLNALTRSERSIVT 308

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKE 307
              GTTRDV+   +++ G    + DTAGIR ETDD VEK G++R+      AD+++L+ +
Sbjct: 309 SREGTTRDVVEASVNIGGLPATLLDTAGIRSETDDEVEKIGVERSRAAAAGADIVVLVVD 368

Query: 308 I--------NSKKEISFPKNIDFI----FIGTKSDLYSTYTEEYD----------HLISS 345
                    ++  +     N         +  K+D+                     +S+
Sbjct: 369 AERGWVSEDSAIWQSEIANNARARGSSVLVVNKTDIADASNATPPPEVLESFSTVVHVSA 428

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLD 403
            TG+ LE L + I   +S            +++R    L   +  L+        D  LD
Sbjct: 429 ATGDNLEHLEHAIVRTVSGGEVDAEGGAWAANQRQAEALQNALDSLDRLRDTIAADMPLD 488

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +LR A+ +LG +TG    E +LD IF +FCIGK
Sbjct: 489 FWTIDLREAAFALGSVTGDDVTEDVLDTIFERFCIGK 525


>gi|224437875|ref|ZP_03658822.1| tRNA modification GTPase TrmE [Helicobacter cinaedi CCUG 18818]
 gi|313144324|ref|ZP_07806517.1| tRNA modification GTPase TrmE [Helicobacter cinaedi CCUG 18818]
 gi|313129355|gb|EFR46972.1| tRNA modification GTPase TrmE [Helicobacter cinaedi CCUG 18818]
          Length = 465

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 136/461 (29%), Positives = 230/461 (49%), Gaps = 30/461 (6%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
           +  TI A++T     AISI+RLSG   + +   +  +    PR A L   +  +   +D+
Sbjct: 11  DDSTIVAIATPVGVGAISIVRLSGEFAYNIALKLTHRDSLKPRYAHLCQIYD-ENTAIDE 69

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
            +++ FP P S+T +D  E   HGGI+   GI+E   ++   RLAN GEF++RAF  G++
Sbjct: 70  AIVLFFPKPHSYTTQDVCEVQCHGGISSAKGIVELCLRL-GARLANAGEFTKRAFLGGRL 128

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +  ++A +I S++    ++ M  + GELS       +KL  + +F E ++D+SEE +
Sbjct: 129 DLAQTHAIAGIIQSQSLEANKILMRQLKGELSGFVKTNREKLLTLLAFSEVNIDYSEEVE 188

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEI-IRNGYKIVILGHSNAGKSSLFNALAKK 242
               +    + D L        HI +  +  + +  GY + I+G  N GKSSL NAL   
Sbjct: 189 QDYITQ---MQDSLQELESCFKHIYEASIMRLGVIEGYTLSIVGKPNVGKSSLLNALLMY 245

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+D+ GTTRD +   L +EG +V+I DTAGIR++ D +E+ GI +T   ++ +D+I
Sbjct: 246 ERAIVSDVEGTTRDTIEESLQIEGVIVRIVDTAGIRQSPDAIEQIGIAKTKEALDRSDVI 305

Query: 303 LLLKEIN------SKKEISFPK---NIDFIFIGTKSDLYSTYTEEY-------------- 339
           + L + +       ++ +       +   + + TKSDL   +  +Y              
Sbjct: 306 IALFDSSRAFDEKDREILDLLATHTDKHILLVLTKSDLPLAFDTKYLSEFVAQNPNVLQE 365

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             L  S    G + +I  +KS+++         + SH   L  L   +  +  A      
Sbjct: 366 SPLYISIESGGAKAVIEALKSVINTHSGGDGLILTSHY-QLKSLKDVLDSITKAYDVLNL 424

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L++ + ++R    +L  IT   +  QLLD +F  FC+GK
Sbjct: 425 GELELFSYHIRDCITALSNITHPYEDSQLLDKLFGTFCLGK 465


>gi|308800228|ref|XP_003074895.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri]
 gi|116061445|emb|CAL52163.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri]
          Length = 508

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 134/471 (28%), Positives = 216/471 (45%), Gaps = 37/471 (7%)

Query: 4   EKETIF--AVSTGALPSAISIIRLSGPSCFQVCEFIC-------KKKKPFPRKASLRYFF 54
           + +TI   A +T      ++I+RLSGP+   +   +          +     +A+     
Sbjct: 41  DADTIVGVATATAGAVGGVAIVRLSGPNALTIASDVFAVGRGGKGVETWESHRATYGRVT 100

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             DGR +D+ + I F +P S+T ED  E H HGG   V   L    +    R A  GEF+
Sbjct: 101 EADGRAIDEAIAIAFIAPRSYTAEDVVELHCHGGAVCVQRTLMRC-RELGARTARRGEFT 159

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RAF NG++DL +AE++  L+S+ T      ++  M G L++   +       + + +EA
Sbjct: 160 LRAFLNGRLDLAQAEAVHALVSARTTAGADSALAAMRGGLTTPVSEARRTCVDLLAELEA 219

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            LDF +  ++     + +       +  I   +   K G ++  G  + ILG  N GKS 
Sbjct: 220 RLDFDD--EMVPLDVEAIERKASEAREKIREVLQTAKRGALLETGVTVAILGRPNVGKSR 277

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTF 293
           L NAL + + +IVT   GTTRDV+   +++ G  V + DTAGIR ETDD VE+ G++R+ 
Sbjct: 278 LLNALTRSERSIVTSREGTTRDVVEASMNVAGIPVVLLDTAGIRSETDDEVEQIGVERSR 337

Query: 294 LEVENADLILLLKEINS----------KKEISFPKNID--FIFIGTKSDLYSTYTEEYD- 340
                AD++ L+ + +           K EI+  +      I +  K+D+          
Sbjct: 338 AAAAGADVVALVVDASRGWVSEDYDIWKSEIAANERARGAAILVINKTDVADAENATPPA 397

Query: 341 ---------HLISSFTGEGLEELINKIKSILSNKFKKLP-FSIPSHKRHLYHLSQTVRYL 390
                      IS+ TG+ L EL   +   ++         S   ++R    L   +  L
Sbjct: 398 DVVDSFSDVVRISAATGDNLVELERALARCITGDVVNTESESWAVNQRQAEALHVALDSL 457

Query: 391 EMAS-LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +      + D  LD    +LR A+ +LG +TG    E +LD IF +FCIGK
Sbjct: 458 DRLRDTIDADMPLDFWTIDLREAAFALGTVTGEDVTEDVLDTIFERFCIGK 508


>gi|255723826|ref|XP_002546842.1| hypothetical protein CTRG_01147 [Candida tropicalis MYA-3404]
 gi|240134733|gb|EER34287.1| hypothetical protein CTRG_01147 [Candida tropicalis MYA-3404]
          Length = 488

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 152/480 (31%), Positives = 250/480 (52%), Gaps = 42/480 (8%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGR- 59
           N  K TIFA+ST    SAI+++R+SGP    +   + +    P  R AS+R     +   
Sbjct: 10  NTLKPTIFALSTKLGKSAIAVVRISGPQAKYIYNKLTRTTTPPKNRIASVRKLLSTETDK 69

Query: 60  --ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPG 111
             ILD+ L +  P P+++TGED  E H+HGGIA++  ++  +  +        +R A+ G
Sbjct: 70  PSILDEALTLYLPGPKTYTGEDLLELHLHGGIAIIKAVMNSIKTLHAPDQGIIIRQADRG 129

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EFSR+AF NG++DL E E + ++I+SETE QR  ++   SG+   ++ QW   +    + 
Sbjct: 130 EFSRQAFVNGRLDLTELEGINEMINSETEQQRLANLSSSSGKTRLVFKQWRQDILEEIAN 189

Query: 172 IEADLDFSEEEDVQNFS--SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           +   +DF E+ D+         V+ +I  L+  I  ++ + +  EI+ NG K+ +LG  N
Sbjct: 190 LTTIIDFGEDHDLDETETLINNVIVNIKKLEEQIRKYLKKVRSSEILLNGIKLTLLGPPN 249

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKE 287
           AGKSS+ N L  KD AIV++I GTTRD L I  ++ G+ V I DTAGIR  E  DI+E+E
Sbjct: 250 AGKSSILNTLVNKDAAIVSEIAGTTRDALDIPCEIGGFKVVIGDTAGIRMLEKADIIERE 309

Query: 288 GIKRTFLEVENADLILLLKEINSKKEISFPKNI---------DFIFIGTKSDLYS----- 333
           GIKR       ADLI+++ +  + +     K+          + + +  K DLY      
Sbjct: 310 GIKRAIERSYLADLIIVVLDPTTTENTDELKDHLANLMKEKKNILIVLNKQDLYPDSVND 369

Query: 334 ---------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP-FSIPSHKRHLYHL 383
                       ++   ++S  +G+G++EL   + +   +  +      +    R    L
Sbjct: 370 MIEQYSVSLNVPKDLFQVVSCSSGQGMDELQELLVNKFKSLAETDESDPVLVSSRIQDIL 429

Query: 384 SQTVRY--LEMASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
              + Y   E     ++D  + +  + L  +   +GKITG  +D++++LD++FS FCIGK
Sbjct: 430 ENDILYGFNEFYKWAKQD-DVVVATDCLTQSVDGIGKITGEYIDLDEILDVVFSNFCIGK 488


>gi|224367780|ref|YP_002601943.1| TrmE [Desulfobacterium autotrophicum HRM2]
 gi|223690496|gb|ACN13779.1| TrmE [Desulfobacterium autotrophicum HRM2]
          Length = 465

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 138/465 (29%), Positives = 227/465 (48%), Gaps = 33/465 (7%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR------KASLRYFFGLD-- 57
           +TI A++T      I IIR+SGP    +           P         ++ + +  D  
Sbjct: 4   DTIAAIATPPGRGGIGIIRISGPKALGLVPRFFGTTPVGPSPDLTLVSHTMVHGYIFDIK 63

Query: 58  -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
            G ++D+ LL+   +P S+T ED  E   H G   +  IL+++      R+A PGEF++R
Sbjct: 64  TGYVIDEVLLVTMEAPRSYTAEDVVEIQSHAGHLAMATILDQVVSA-GARIAEPGEFTKR 122

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF NG+IDL +AE++AD+I++ T    +++    +GEL        + L  + + +EA +
Sbjct: 123 AFLNGRIDLTQAEAVADIINARTAGALKIAAAQGTGELKDAIHGAREILIELLALLEAAI 182

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF + E      S + +  +  +       I   +    +R+G K+ I G  N GKSSL 
Sbjct: 183 DFPD-ETQDLVPSDQGIVRVKQVLTACEKFIQTYEEAHFLRDGIKLAICGPPNVGKSSLM 241

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L +K+ +IVT++PGTTRD++   L++ G    +SDTAG+ +TDD+VE+ GI+R    +
Sbjct: 242 NRLLQKERSIVTELPGTTRDLIEETLNINGITFLVSDTAGMHQTDDLVERIGIERAKKHI 301

Query: 297 ENADLILLLKEIN-----SKKEISFPKNIDFIFIGTKSDLYS---------------TYT 336
             +DLIL +K  +     S+ +   PK+   I +  K DL                 T  
Sbjct: 302 AASDLILFMKGADKEISESELQSIVPKDKKVILVINKIDLIEGKTAGSAGVEKSLPPTLA 361

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
           +     IS+    G++ L   I  +      +   S+  + RH   L + ++ L+ A   
Sbjct: 362 QLPQVRISALKNTGIDHLRKTITRLSMENIGEAS-SVVPNLRHRTALKRAIKSLKTAEAG 420

Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                  + +A ++R A+  LG+ITG      +LD IFS FCIGK
Sbjct: 421 FLNGQNEETLALDIRRAADLLGEITGNTAGIDILDTIFSNFCIGK 465


>gi|46579492|ref|YP_010300.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81830466|sp|Q72D51|MNME_DESVH RecName: Full=tRNA modification GTPase mnmE
 gi|46448906|gb|AAS95559.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233307|gb|ADP86161.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris RCH1]
          Length = 457

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 139/470 (29%), Positives = 226/470 (48%), Gaps = 43/470 (9%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSG----------PSCFQVCEFICKKKKPFP---RK 47
           M H+ +TI A++T                        P+  +V   + +         R 
Sbjct: 1   MQHD-DTIAAIATPLGQ----------GGIGIIRISGPASLEVLRALFRPSSSRFGGFRP 49

Query: 48  ASLRYFFGLDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLR 106
            +L +    DG   LD  L +  P P +FTGED +E H HGG  V+  +LE   +    R
Sbjct: 50  WTLHHGTITDGCDPLDDVLAVHMPGPRTFTGEDVSEIHCHGGSGVLAAVLEACVR-HGAR 108

Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166
            A  GEF+RRAF NG++DL +AE++A++I++ +    RL+   + G L    G    +L 
Sbjct: 109 YAERGEFTRRAFLNGRMDLTQAEAVAEMIAAPSREGMRLAQAKLDGLLGQRVGALRARLD 168

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            +R  +   +DF E E+V+  + +  L +I  ++  +    +        ++G  +V+ G
Sbjct: 169 ALRMQLCVAVDFPE-EEVECLAPEAFLAEIEAVRQGVVELSAGYARTRCWQDGALVVLAG 227

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             NAGKSSL NAL  +  AIVTD+PGTTRD +   L+L G  ++++DTAG+RET DIVE+
Sbjct: 228 QVNAGKSSLMNALLGRRRAIVTDLPGTTRDFIEEPLNLSGLAIRLADTAGLRETGDIVEQ 287

Query: 287 EGIKRTFLEVENADLILLLKEIN---SKKEISFPKN---IDFIFIGTKSDLY------ST 334
           EG++ +   V  ADL+LL+ +        E+   ++      + +  K+DL       ST
Sbjct: 288 EGVRMSRDLVAQADLVLLVTDATQGLQGPELELLRHAGPERVLVVFNKTDLLEGRILPST 347

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP---FSIPSHKRHLYHLSQTVRYL- 390
                   +++ +G+G+E L+  I++ +             +  + R    L +    L 
Sbjct: 348 PEGCRSVHVAAASGDGVESLVTAIRAAVLAATGAGEPEAGELAPNMRQAAALDKAATILD 407

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+A         D+    L  A  +L  +TG    E +LD IF+ FCIGK
Sbjct: 408 ELAGDIRAHVPYDLCGVRLDGACAALMDVTGQSTPEAILDAIFASFCIGK 457


>gi|254582943|ref|XP_002499203.1| ZYRO0E06446p [Zygosaccharomyces rouxii]
 gi|238942777|emb|CAR30948.1| ZYRO0E06446p [Zygosaccharomyces rouxii]
          Length = 506

 Score =  332 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 160/480 (33%), Positives = 257/480 (53%), Gaps = 46/480 (9%)

Query: 7   TIFAVSTGAL-PSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGLDGRILDKG 64
           TI+A+ST     SAI+++R+SG     V   +    KK   R+  LR  +G    +LDK 
Sbjct: 27  TIYALSTAPGTKSAIAVVRISGTHSKYVYHQLNNSEKKLIHRRTLLRNLYGPGKNLLDKA 86

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFSRRAF 118
           L + F SP+S+TGED  E H+HGG AV   +L  +  + +      +R A PGEF++RAF
Sbjct: 87  LTLFFDSPKSYTGEDLLELHIHGGKAVTGSVLNAIGSLNDRNSGIEIRYALPGEFTQRAF 146

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           +NGKIDL+E E + +LI +ETE QRR ++   +G   +L+  W DK+ +  + + A +DF
Sbjct: 147 QNGKIDLIEVEGIRELIDAETETQRRCALSSFNGMNKNLFMLWRDKIVNNIAQLTAIIDF 206

Query: 179 SEEEDVQNFSSKEVLNDIL--FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
            E+ ++++ ++   L       LK +I+  I + +   I+++G K+V+LG  NAGKSSL 
Sbjct: 207 GEDTEIEDTNNLLQLVKHNMVQLKQEINQFIQKIEKTSILQSGVKVVLLGPPNAGKSSLI 266

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLE 295
           N+++  DV+I++  PGTTRD +   +D+ GY V ISDTAGIR  + D +E  GI+R   +
Sbjct: 267 NSISNDDVSIISHTPGTTRDTVEASIDVNGYKVTISDTAGIRSHSSDEIELLGIERAIKK 326

Query: 296 VENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDLYSTYTEE------- 338
            E  DL LL+ +  +K  I+          + +  +F+ I  K DL +   +        
Sbjct: 327 SEQCDLCLLIVDPLNKPLINEDLTQMIQSMYKEGKEFVIIVNKQDLLTDENQSKSVMDAL 386

Query: 339 --------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVR 388
                       +S  T EG+E L+ ++  I     +    S  I + +R    L   V 
Sbjct: 387 REKFGDKFPIITVSCKTQEGIEPLVKQLTQIFQRLSETSDESDPIIASRRVKEILHSDVL 446

Query: 389 Y--LEMASLNEKDCGLD-----IIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
           Y         + + G D     + +E+L  A+  +GKITG  V +E++L ++F+ FC+GK
Sbjct: 447 YGIDSFFVTTDSEIGGDSYDVVMASEHLSHAADGIGKITGDAVGIEEVLGVVFANFCVGK 506


>gi|120602958|ref|YP_967358.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris DP4]
 gi|205829135|sp|A1VER5|MNME_DESVV RecName: Full=tRNA modification GTPase mnmE
 gi|120563187|gb|ABM28931.1| tRNA modification GTPase trmE [Desulfovibrio vulgaris DP4]
          Length = 457

 Score =  332 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 138/470 (29%), Positives = 225/470 (47%), Gaps = 43/470 (9%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSG----------PSCFQVCEFICKKKKPFP---RK 47
           M H+ +TI A++T                        P+  +V   + +         R 
Sbjct: 1   MQHD-DTIAAIATPLGQ----------GGIGIIRISGPASLEVLRALFRPSSSRFGGFRP 49

Query: 48  ASLRYFFGLDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLR 106
            +L +    DG   LD  L +  P P +FTGED +E H HGG  V+  +LE   +    R
Sbjct: 50  WTLHHGTITDGCDPLDDVLAVHMPGPRTFTGEDVSEIHCHGGSGVLAAVLEACVR-HGAR 108

Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166
            A  GEF+RRAF NG++DL +AE++A++I++ +    RL+   + G L    G    +L 
Sbjct: 109 YAERGEFTRRAFLNGRMDLTQAEAVAEMIAAPSREGMRLAQAKLDGLLGQRVGALRARLD 168

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            +R  +   +DF E E+V+  + +  L +I  ++  +    +        ++G  +V+ G
Sbjct: 169 ALRMQLCVAVDFPE-EEVECLAPEAFLAEIEAVRQGVVELSAGYARTRCWQDGALVVLAG 227

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             NAGKSSL NAL  +  AIVTD+PGTTRD +   L+L G  ++++DTAG+RET DIVE+
Sbjct: 228 QVNAGKSSLMNALLGRRRAIVTDLPGTTRDFIEEPLNLSGLAIRLADTAGLRETGDIVEQ 287

Query: 287 EGIKRTFLEVENADLILLLKEIN---SKKEISFPKN---IDFIFIGTKSDLY------ST 334
           EG++ +   V  ADL+LL+ +        E+   ++      + +  K+DL       S 
Sbjct: 288 EGVRMSRDLVAQADLVLLVTDATQGLQGPELELLRHAGPERVLVVFNKTDLLEGRILPSA 347

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP---FSIPSHKRHLYHLSQTVRYL- 390
                   +++ +G+G+E L+  I++ +             +  + R    L +    L 
Sbjct: 348 PEGCRSVHVAAASGDGVESLVTAIRAAVLAATGAGEPEAGELAPNMRQAAALDKAATILD 407

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E+A         D+    L  A  +L  +TG    E +LD IF+ FCIGK
Sbjct: 408 ELAGDIRAHVPYDLCGVRLDGACAALMDVTGQSTPEAILDAIFASFCIGK 457


>gi|50308583|ref|XP_454294.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643429|emb|CAG99381.1| KLLA0E07657p [Kluyveromyces lactis]
          Length = 501

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 150/466 (32%), Positives = 254/466 (54%), Gaps = 34/466 (7%)

Query: 7   TIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64
           T++A+ST +   SAI+IIR+SG     + + +  KK    RK  +R  +      ++D+ 
Sbjct: 38  TVYALSTPSNQHSAIAIIRISGTHSKYILKKLSPKKPLRQRKPMIRSLYDPKASTLIDEA 97

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA----KMPNLRLANPGEFSRRAFEN 120
           L++ FP P +FTGED  E H+HGG A++   L  +        ++R+A PGEFSRRAF+N
Sbjct: 98  LVLYFPQPRTFTGEDLVELHLHGGKAIIKAALNSIQGLRDSERDIRMAMPGEFSRRAFQN 157

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DLL+ ES+ ++I S+TE+QR  ++ G   +   ++ +W  ++    + + A +DF E
Sbjct: 158 GKMDLLKLESINNMIHSDTELQRLSALHG--NQTVDIFHEWRQEIIEQIAKLTAIIDFGE 215

Query: 181 EEDVQNFSSKEV--LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           + + ++  S      + +L L   ++  + +     ++ +G K+ +LG  N+GKSSL N 
Sbjct: 216 DIETEDIDSIVNGANDKLLQLYKKVTRFMVKLDRMAVLNDGIKLTLLGEPNSGKSSLVNE 275

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVE 297
           +++ DVAIV+DIPGTTRD + + +D+ G+   ++DTAGIR+ T D +E +GI R+  +  
Sbjct: 276 ISQDDVAIVSDIPGTTRDSIDVMMDINGFKCILTDTAGIRQGTSDSIEIKGIDRSKKKSL 335

Query: 298 NADLILLLKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEY---------- 339
            +DL++L+ ++++                +   I +  KSDL +    +Y          
Sbjct: 336 QSDLVVLVIDVSNPNISKHFEEFIKDNLSDKPLIVVLNKSDLATETQLKYLIEKFDAEFK 395

Query: 340 ---DHLISSFTGEGLEELINKIKSILSN-KFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
               H +S  T  GLE L+  +          +    +    R    LS  + +      
Sbjct: 396 ALKIHTVSCLTKIGLEPLVKTLTLSFRRISATENEDPVTVSNRVKEILSTDILFGLDQFF 455

Query: 396 NEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
             K+  + I  E+LR+AS  +GKITG  VD+E++LD++FSKFCIGK
Sbjct: 456 QHKNDDILIACESLRIASDGIGKITGDNVDLEEVLDVVFSKFCIGK 501


>gi|145344534|ref|XP_001416786.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577012|gb|ABO95079.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 489

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 164/484 (33%), Positives = 246/484 (50%), Gaps = 48/484 (9%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFF----- 54
           +ETI+A++T    + +S++R+SGP+                       A           
Sbjct: 6   RETIYALATARGRAGVSVVRVSGPNARDALRLTRPPGGANSSDGAATAAEHGRLRLVEFA 65

Query: 55  ----GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANP 110
                 D   +D G + VF SP SFTGED  E H HG  AV   +++ L  + N R+A  
Sbjct: 66  RGDAARDEPPIDVGFVAVFASPRSFTGEDVVELHAHGSAAVQRALMDALGTLDNFRVAEA 125

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSS-LYGQWIDKLTHIR 169
           GEFSRRAF NGK+DL +AE LADL+ ++TE QRR +M          +Y  W  +L    
Sbjct: 126 GEFSRRAFRNGKMDLTQAEGLADLLDADTEAQRRQAMMLSRNAAQRSMYETWRKELLTCA 185

Query: 170 SFIEADLDFSEEEDVQ-NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           ++ EA LDF EEED+  +   ++V   +  L++ +  ++     GE+IR G ++ ++G  
Sbjct: 186 AYCEAALDFGEEEDIASDVVERKVRERVKALRDTLQKYLDAPARGELIRRGVRVALVGSP 245

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           N GKSS+ NALA +D AIV+   GTTRDVL + L+L GY V +SDTAG+RET+D VEK G
Sbjct: 246 NVGKSSMLNALAGRDAAIVSPHAGTTRDVLEVSLELGGYKVIVSDTAGLRETEDDVEKLG 305

Query: 289 IKRTFLEVENADLILLLKEI-NSKKEISFPK----NIDFIFIGTKSD-LYSTYTEEYDHL 342
           I R     E+AD+++ L +  N    I            + +  KSD L    T E   +
Sbjct: 306 IARALERAEDADVVVALADATNDASNIDLKALNLSKKTIVNVWNKSDALSDGQTRELMEI 365

Query: 343 I-------------SSFTGEGLEELINKIKSILSNKFKKLPFS--------IPSHKRHLY 381
                         S  TG GL+  I+ +  I++ K      +          +  RH  
Sbjct: 366 ENETAADGYETAVVSCLTGAGLDGFISTLTRIVAQKCTIGDDASDANDSTLAITRSRHRV 425

Query: 382 HLSQTVRYLE-----MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436
           +L++ V  L+       + +     L++ AE L+LA+ +LG++TG  DVE +LD++F  F
Sbjct: 426 NLARCVASLDAAVARARASSASASALELEAEELKLAARALGRVTGAYDVEDVLDVVFRDF 485

Query: 437 CIGK 440
           C+GK
Sbjct: 486 CVGK 489


>gi|118474837|ref|YP_891745.1| tRNA modification GTPase TrmE [Campylobacter fetus subsp. fetus
           82-40]
 gi|205829129|sp|A0RNG2|MNME_CAMFF RecName: Full=tRNA modification GTPase mnmE
 gi|118414063|gb|ABK82483.1| tRNA modification GTPase TrmE [Campylobacter fetus subsp. fetus
           82-40]
          Length = 438

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 137/442 (30%), Positives = 233/442 (52%), Gaps = 15/442 (3%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67
           I A+++     +ISI+RLSG   + +   +CK K   PR A LR  +  +   LD+ ++I
Sbjct: 3   IVALASAYGVGSISIVRLSGDGAYDLAINLCK-KPLTPRYAHLRKLYCENMVFLDEAIVI 61

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127
            + +P SFTGED  EF  HGG+ V N I++EL ++   R+ANPGEFS+RAF NGK+DL++
Sbjct: 62  YYKAPFSFTGEDVVEFQTHGGVVVANLIIDELLRL-GARVANPGEFSKRAFLNGKMDLVK 120

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           AES+  LI++ +E   ++    M+GELS       D+L  I ++ E  +D+++ +D+ + 
Sbjct: 121 AESIQSLINARSEGAAKILARTMNGELSVFVNSLRDELIKILAYTETCIDYAD-DDLPSD 179

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
                 + +L     +   I+     + + +GYK+ I+G  N GKSS+ N+L   + AI 
Sbjct: 180 ILHSSKDLLLNSYKKLEHIINISNSKKGLIDGYKVAIIGRPNVGKSSILNSLLHYERAIT 239

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENADLILLLK 306
           ++  GTTRD +   +    +LV+I DTAGIR+  D  +E  GI+ +      AD+I  + 
Sbjct: 240 SETAGTTRDTIEEQIKFGSHLVRIIDTAGIRDEFDSSIEAAGIEYSKRAAREADIIFCVF 299

Query: 307 EINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           + + K  +   +        N   I++  KSDL   +    + ++ S   +    L  ++
Sbjct: 300 DSSQKASLEDRQILEFISNLNKKTIYVLNKSDLEFKFDISLNAVLVSAKLDST-PLSKEL 358

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           +S L+   +     + S  R +         ++ A     +  L++ A  L +A   +G 
Sbjct: 359 ESYLN--SQDTNDIMLSSNRQIEASRLASEAIKNALELLNESELELFAYELNIALKHIGS 416

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           IT  ++  +LLD +FS FC+GK
Sbjct: 417 ITKPMENSELLDKMFSSFCLGK 438


>gi|304320459|ref|YP_003854102.1| tRNA modification GTPase [Parvularcula bermudensis HTCC2503]
 gi|303299361|gb|ADM08960.1| tRNA modification GTPase [Parvularcula bermudensis HTCC2503]
          Length = 421

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 140/428 (32%), Positives = 230/428 (53%), Gaps = 9/428 (2%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGRILDKGLLIVFPSPE 73
              + I++ RLSGP+  ++ + +   + +P  R+A+ RY    +G +LD GL++ FP P 
Sbjct: 1   MGKAGIAVWRLSGPASGEILDRLSGGRPRPQARRATHRYLVTPEGALLDDGLVLWFPGPA 60

Query: 74  SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133
           S TGED  E H+HG +AV    L  +      R A PGEF+ R F +GK+ LL  E LA 
Sbjct: 61  SATGEDMVELHLHGSLAVARA-LPPILSNLGARAAMPGEFTLRGFHHGKMSLLAVEGLAA 119

Query: 134 LISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           L+ SETE QRR +M  +SGE S+   +W   L   R+ +E+ +DF +EED+    ++EV 
Sbjct: 120 LLDSETEAQRRQAMRTLSGEGSAQVARWRAHLLRARAVLESAIDFPDEEDIPAQIAEEVR 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             ++ L  ++ + +++ K    +R G ++ I+G  NAGKS+L NAL K+D A+V+ +PGT
Sbjct: 180 PALVALYGELQTALAEAKDARRLREGIEVAIIGPPNAGKSTLLNALLKEDRALVSSLPGT 239

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TRD+++  L++ G +V+I DTAGIRE T D +E+ G++R+      ADL++      +  
Sbjct: 240 TRDIVSARLEIGGRVVEILDTAGIREATTDDIERAGVERSRDAAARADLVIACSPAGAPP 299

Query: 313 EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +   +   + + TK+D       +    IS  +G   +  +      +        F+
Sbjct: 300 P-AIDTDAQILAVATKAD-EGRAASDPRLAISVHSGANWDRFLTAFTEAVLALGGGGLFA 357

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432
               +R    + +    +E   L       +++AE +R    +L  +TG +  E +L  I
Sbjct: 358 Y---ERQRLLIGEAATAVER-ILAADLADPELLAEQVRAIGHTLDALTGKIGTEDILGEI 413

Query: 433 FSKFCIGK 440
           FS FCIGK
Sbjct: 414 FSAFCIGK 421


>gi|283853590|ref|ZP_06370827.1| tRNA modification GTPase TrmE [Desulfovibrio sp. FW1012B]
 gi|283571015|gb|EFC19038.1| tRNA modification GTPase TrmE [Desulfovibrio sp. FW1012B]
          Length = 466

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 139/459 (30%), Positives = 222/459 (48%), Gaps = 26/459 (5%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRYFFGLDGRI 60
           +TI AV+T      + I+R+SGP    V   +    +P      P            GRI
Sbjct: 10  DTIAAVATPPGRGGVGIVRVSGPQSRLVASRLFLSPRPGFSGLRPYILHHGSLRAPSGRI 69

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ +    P P S+TGED+ EF  HG  AV+  +    A     R A PGEF+RRA+ N
Sbjct: 70  IDEAMAAYMPGPGSYTGEDTVEFFCHGSPAVLRAV-LAAAFAYGARPAGPGEFTRRAYVN 128

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++A+L+++  + Q  +++  +SG +     +    L  +R+ +   +DF +
Sbjct: 129 GRLDLSQAEAVAELVAARGDAQADMALVRLSGGMGQAARELGLALDDLRASVCLAVDFPD 188

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +E V+    K     +  + + + + ++  +     R G ++ + G  NAGKSSLFNAL 
Sbjct: 189 DE-VECLPKKSFGAGVSAVIDRVETLLAAHRRARPFREGARVALFGRVNAGKSSLFNALL 247

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             D A+V D+PGTTRD L   LDL+G  V ++DTAG+R+T D VE+ G  R       A 
Sbjct: 248 GTDRALVADVPGTTRDYLEEGLDLDGLPVNLTDTAGLRQTLDAVEQAGKARGLALAGTAA 307

Query: 301 LILLLKEIN-------SKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDH---------LI 343
           L L + + +         +E+      D +  +  K+DL +      D           +
Sbjct: 308 LGLYVVDGSVPFAPDAEAEELVAALGPDRVLGVVAKADLPAATPAPGDILAIRGLESVAV 367

Query: 344 SSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCG 401
           S+ TG GL  L+  I++ L+       P +     R    L  T    L +      D  
Sbjct: 368 SARTGHGLAGLLTAIRTRLTRDAGLPEPETPAPSDREAACLVATRDELLALLGDIRDDLP 427

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            D++   L  AS++L  ITG    + +L+ +FSKFCIGK
Sbjct: 428 YDLLGVRLEAASLALADITGETSADDVLNAVFSKFCIGK 466


>gi|306842823|ref|ZP_07475463.1| small GTP-binding protein [Brucella sp. BO2]
 gi|306287017|gb|EFM58528.1| small GTP-binding protein [Brucella sp. BO2]
          Length = 349

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 157/350 (44%), Positives = 235/350 (67%), Gaps = 2/350 (0%)

Query: 92  VNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMS 151
           +  +L  L ++P  R+A  GEF+RRAF NGK+DL  AE LADLI++ETE QRRL+++  S
Sbjct: 1   MEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLADLIAAETEGQRRLALQVAS 60

Query: 152 GELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK 211
           G    LY +W  +L + R+FIEA+LDF++E DV    S +V   +  LK++I  HI+ GK
Sbjct: 61  GNQRKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVWQQLSALKHEIEHHIASGK 120

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
              ++R+G  +VI+G  NAGKSSL N LA +DVAI+++  GTTRD+L + LDL G  V +
Sbjct: 121 RAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVAIISEEAGTTRDLLEVKLDLGGIPVYV 180

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-NIDFIFIGTKSD 330
           +DTAG+RETD +VEK GI+R    +  ADL+L L++++    ++  K   +   IGTK+D
Sbjct: 181 TDTAGLRETDSVVEKIGIERARARMAEADLVLSLEDMSEPVPVTVEKIEAETWLIGTKAD 240

Query: 331 LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
           L    +  + + IS+ TG GLE+L++ +++    K  ++  ++P+ +RH+  L  T+  +
Sbjct: 241 LGERASGLWKYRISTMTGSGLEQLLDALQAFAEAKIGQIEDAVPTRQRHINLLRATIEEI 300

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E A +   D  L++ AEN+RLAS  LG+ITG VDVE++LD+IFS+FCIGK
Sbjct: 301 EKA-IEGDDLPLELRAENMRLASQFLGRITGDVDVEEILDVIFSQFCIGK 349


>gi|84684647|ref|ZP_01012548.1| tRNA modification GTPase [Maritimibacter alkaliphilus HTCC2654]
 gi|84667626|gb|EAQ14095.1| tRNA modification GTPase [Rhodobacterales bacterium HTCC2654]
          Length = 423

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 167/437 (38%), Positives = 248/437 (56%), Gaps = 17/437 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+++    + +++IR+SGP  F   E +     P  R   LR         +D+ L
Sbjct: 2   DTIFALASARGKAGVAVIRVSGPDAFSAGEVLAG-ALPPARTTGLRTLRN-GNDPIDEAL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F    SFTGE   EFH+HG  AVV+ +L  L+ +P LR+A PGEF+RRA EN ++DL
Sbjct: 60  VLSFSEGASFTGEPVVEFHLHGSTAVVSSVLSTLSSVPGLRMAEPGEFTRRAMENERLDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + E LADLI SETE QR+ ++  +SG L     QW   L    + +EA +DF++ E+V 
Sbjct: 120 AQVEGLADLIDSETEAQRKQALRVLSGALGDKTSQWRKDLVRATALLEATIDFAD-EEVP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S EVL+ +      + +  +  ++ E IR+G+++ I+G  NAGKS+L NALA +D A
Sbjct: 179 VDVSPEVLDLVDRTLAGVRTETAGARISERIRDGFEVAIVGAPNAGKSTLLNALAGRDAA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +++ GTTRDVL + +DL G  V I DTAG+RE++D++E+ GI+R      +ADL + L
Sbjct: 239 ITSEVAGTTRDVLEVRMDLAGLPVTILDTAGLRESEDVIERLGIERAKARAADADLRIFL 298

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
               S + +        I +  KSDL  T        IS  TGEGL+ L+ +I S+LS +
Sbjct: 299 L---SGEVLPMDPMDGDIVVQGKSDLTGT-------GISGKTGEGLDFLVEQITSVLSER 348

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCV 423
                 +I   +RH   LS     LE A +  +      ++ AE L  A  +L  + G V
Sbjct: 349 ASHAGTAI--RERHRVALSMAQVALENARIEVQSGSERSELAAEELWSAIRALDALMGRV 406

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVE +LD IF+ FC+GK
Sbjct: 407 DVEVVLDEIFASFCLGK 423


>gi|116750025|ref|YP_846712.1| tRNA modification GTPase TrmE [Syntrophobacter fumaroxidans MPOB]
 gi|205829177|sp|A0LLH5|MNME_SYNFM RecName: Full=tRNA modification GTPase mnmE
 gi|116699089|gb|ABK18277.1| tRNA modification GTPase trmE [Syntrophobacter fumaroxidans MPOB]
          Length = 470

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 134/475 (28%), Positives = 215/475 (45%), Gaps = 49/475 (10%)

Query: 4   EKETIFAVSTGALPSAISIIRLSG----------PSCFQVCEFICKKKKPFPRKASLRYF 53
             +TI A++T                        P    +   +  +        S R +
Sbjct: 7   THDTICAIATPVGE----------GGIGIIKISGPEATAIARRLFMRSGSGSGLESHRLY 56

Query: 54  FG-----LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLA 108
            G     + G+ LD+ L+    +P ++T ED  E + H G AV+N ILE L      RLA
Sbjct: 57  HGWIKDPVTGQSLDEVLVGTMAAPHTYTREDVVEINCHSGFAVLNRILE-LVLREGARLA 115

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
           +PGEF+RRAF NG+IDL +AE++ ++I S +E    L+   + G L      W + L  +
Sbjct: 116 DPGEFTRRAFLNGRIDLSQAEAVIEVIRSRSEQGLLLANRLLRGALGEKVRSWREGLLEL 175

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDIL-----FLKNDISSHISQGKLGEIIRNGYKIV 223
           +S IEA +DF ++ D     +       +      L   +S+ +   +    +R G  +V
Sbjct: 176 QSRIEATIDFEDDLDEDALCAVSDRARFVTRLDGELIPALSAALESAERSRALREGVSLV 235

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           + G  N GKSSL NAL  +D AIVT  PGTTRDV+     L G LV++ DTAG+R   D 
Sbjct: 236 LAGKPNVGKSSLLNALVGRDRAIVTPFPGTTRDVVEDTFLLSGILVRVLDTAGLRHDPDE 295

Query: 284 VEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT- 336
           +E  GI RT   +E AD++L + +            +    +  F+ +  K DL    + 
Sbjct: 296 IESFGIARTIQSLEEADIVLCVMDRSRPLSAEDDAVVEAVASRPFVIVLNKEDLPPAIST 355

Query: 337 -EEYDHLISSFTGEGLEEL----INKIKSILSNKFKKLPF-----SIPSHKRHLYHLSQT 386
            +  +    +     +  L    + +++  L+ +F +LP      +I  + R    + + 
Sbjct: 356 GKIRERYGENVPIMAISALRPPDVERLRDFLNQRFLRLPLEQSGSAIVPNLRQRGCIEKA 415

Query: 387 VRYLEMAS-LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ +  A  L       ++ +  LR A   L  + G    + LLD IFS FCIGK
Sbjct: 416 LQAMIRARDLISGGGFWELASTELRTARNELDSVLGWNGDDALLDRIFSDFCIGK 470


>gi|87300820|ref|ZP_01083662.1| tRNA modification GTPase [Synechococcus sp. WH 5701]
 gi|87284691|gb|EAQ76643.1| tRNA modification GTPase [Synechococcus sp. WH 5701]
          Length = 394

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 132/395 (33%), Positives = 217/395 (54%), Gaps = 13/395 (3%)

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
              G  LD+ LL++  +P SFT ED  E H HGG+  V  +LE L  +   R A PGEFS
Sbjct: 4   PASGERLDEALLLLMKAPRSFTREDVVELHCHGGLIAVARVLE-LVLLSGARRARPGEFS 62

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RAF NG++DL  AE+++DLI++ +    +L++ G+ G L        ++L    + +EA
Sbjct: 63  QRAFLNGRLDLTRAEAISDLITARSRRAAQLALAGLDGGLQRRISALRERLLDQLAELEA 122

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF E  D+     + ++ ++  ++ ++   +++  +G+++R G K+ I+G  N GKSS
Sbjct: 123 RVDFEE--DLPPLDPEALVAELEAVRLELQVLVAEASVGQLLREGLKVAIIGRPNVGKSS 180

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL++++ AIVT++PGTTRD+L  +L L+G  + + DTAGIR TDD VE+ GI+R+  
Sbjct: 181 LLNALSRRERAIVTELPGTTRDLLESELVLQGVPLTLLDTAGIRPTDDPVERLGIERSRQ 240

Query: 295 EVENADLILL-------LKEINSKKEISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISSF 346
            +  AD +LL         + +++        +  + +G K+D  +     + D +IS+ 
Sbjct: 241 ALAAADAVLLLVDLAEGWTQADAELHAQVLAGVPSLVVGNKADRAAGAPPAQVDVVISAL 300

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCGLDII 405
           TG GLE L   + S   +   +    +  + R     +     L+            D  
Sbjct: 301 TGSGLEALAEALLSRCGHSLGQ-GLEVALNVRQRDLAAAAATSLDGSLEAAAAGLPWDFW 359

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +LR A+ SLG+ITG    E +LD +FS+FCIGK
Sbjct: 360 TIDLRQAARSLGEITGEEVNEAVLDRVFSRFCIGK 394


>gi|324514013|gb|ADY45734.1| tRNA modification GTPase mnmE [Ascaris suum]
          Length = 471

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 234/458 (51%), Gaps = 32/458 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+S+G+LPSAI+IIR+SG       + + K++K   R       F + G ++D+ + 
Sbjct: 22  TIFALSSGSLPSAIAIIRVSGEESRMCLQRLTKRQKFKARYMFYSSLFDVGGELIDRAMA 81

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR-----RAFENG 121
           +  P P +FTGED+AE +VHG  AVVN + E L    N+R A  GEF++     RAF N 
Sbjct: 82  VFLPGPSTFTGEDTAEIYVHGSRAVVNCVCETLNHFENVRPAKAGEFTKRLRFARAFFNS 141

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+D+   +SL+ L+S+ET+ QR L++     ++        + L  +   +EA +DF+  
Sbjct: 142 KLDIHGVQSLSYLLSAETQRQRMLAVRS--NQIGLAVSSIRESLVQLACSLEAGIDFA-- 197

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D   F     L+ +  + +++     + + G +I +G ++V+LG +N GKSSL N +A+
Sbjct: 198 -DDVPFDWDSFLSHVRDVTSELKMIEQRAQKGCLIIDGIRVVMLGQTNVGKSSLLNCIAE 256

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +DVAIV+++ GTTRD L   ++L    V  +DTAGIR   D +E E I RT      A +
Sbjct: 257 RDVAIVSEVEGTTRDALEARIELASVPVIFTDTAGIRSAHDFLEAESISRTIARAAEAHV 316

Query: 302 ILLLKEINSKKEISFPKNI-----------DFIFIGTKSDLYSTYTEEY-------DHLI 343
           +L + + +   +I+   ++             + +  K DL   +               
Sbjct: 317 LLPVVDASKCVDIAAEVDVLLRQCHCEDASRVVVVCNKIDLIPAHMHHVVSSLPWKVVFT 376

Query: 344 SSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           S     G+  ++  +K  I +    +   ++ S  R    LS  V  LE           
Sbjct: 377 SCINRTGITNILEAVKEQIAALCPDEGDDALLSRYRQRILLSDAVSLLEQVQSTSDAA-- 434

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            + AE +R AS  +G+I+G +  E++LD IFS FCIGK
Sbjct: 435 -LAAEYVREASALIGEISGAIVNEEILDRIFSSFCIGK 471


>gi|183219714|ref|YP_001837710.1| tRNA modification GTPase TrmE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189909849|ref|YP_001961404.1| tRNA modification GTPase TrmE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|205415774|sp|B0SAE4|MNME_LEPBA RecName: Full=tRNA modification GTPase mnmE
 gi|205415775|sp|B0SJ24|MNME_LEPBP RecName: Full=tRNA modification GTPase mnmE
 gi|167774525|gb|ABZ92826.1| tRNA modification GTPase TrmE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778136|gb|ABZ96434.1| GTPase involved in tRNA modification and in thiophene and furan
           oxidation [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 461

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 153/463 (33%), Positives = 247/463 (53%), Gaps = 32/463 (6%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPF--------PRKASLRYFFGL 56
           +TI A+ST   P AI I+R+SG     +   +  K +KP          R A    F   
Sbjct: 3   DTIAALSTAQGPGAIGILRVSGSLVMPIALAVLEKNQKPLTETFLQNQKRSAIFCDFV-E 61

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +G+ LD+ +   FP+P S+TGED AEFH+HG   ++   L  L +    R A  GEF++R
Sbjct: 62  NGKPLDQIVFFYFPAPNSYTGEDLAEFHLHGNPLLLKRALHVLFE-KGARPAQKGEFTKR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           A+ NGKI+L  AE+++ LI + ++ +  L+ + + GE++ L  +    L  +++  EA++
Sbjct: 121 AYMNGKINLSGAEAISRLIEARSKYELELAQKNVFGEITKLSSKIRSDLISLKAECEAEI 180

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DFS  ED+   S +E  N ++ LKN  S  I   +  E       +V+ G  N GKSSL 
Sbjct: 181 DFS-TEDLTFESLEERKNRMVALKNLCSKLIKDSERAESYILQSTVVLYGEPNTGKSSLM 239

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L  KD +I++D+PGTTRD +  +L L+G  +++ DTAGIR+T D +E+ GI+R+  E 
Sbjct: 240 NLLIGKDRSIISDVPGTTRDYIAEELSLDGIPIRLVDTAGIRDTTDNIEQMGIERSKREA 299

Query: 297 ENADLILLLKEINSKKEIS--FPKNIDFIF----IGTKSD-LYSTYTEEYDHL------- 342
           ++A++ L L + +   E      K+ D +F    +  K D  + ++  E  H        
Sbjct: 300 DSANVKLFLIDTSLPFEKQSFLLKHKDRLFGSLIVANKIDSKHPSWHTESIHDIQEEFQL 359

Query: 343 ----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397
               IS  T +G+ EL+  +KS L++K       +    R  YH+ +    L E   L E
Sbjct: 360 TISEISCKTKQGIPELLELLKSKLTSK-DDTEDLVLLEDRQRYHIQKIESCLSEAIQLME 418

Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +   +I  + + +A   +G++ G V+ E++L  IFSKFC+GK
Sbjct: 419 NNAPAEIYIQEINVALHEIGQVNGVVENEEILGRIFSKFCVGK 461


>gi|327354725|gb|EGE83582.1| mitochondrial GTPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 636

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 153/543 (28%), Positives = 247/543 (45%), Gaps = 116/543 (21%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLD-----GRI 60
           TI+A+ST    +AI+I+R+SGP+C Q+   +C K   P PR A+LR  F          I
Sbjct: 96  TIYALSTAPGRAAIAIVRISGPACVQIYNALCPKSPLPEPRVAALRTLFDPSVPPSVNSI 155

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-----------NLRLAN 109
           LD+ +++ FP+P++ TGED  E H+HGG AVV  +L  + +             ++R A 
Sbjct: 156 LDRAVVLHFPAPKTVTGEDILELHIHGGPAVVKAVLNAIPRCAESASSDKFAPSSIRYAE 215

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G +  L+  Y +W  +L + R
Sbjct: 216 PGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAIRGTNDSLAVRYERWRQQLLYTR 275

Query: 170 SFIEADLDFSEEEDVQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
             +EA +DFSE++     + +    +  +   L   I+ HI     GE++RNG K+ +LG
Sbjct: 276 GEMEALIDFSEDQHFDESTEEFVSSITGETRNLVRQINMHIENASKGELLRNGIKVALLG 335

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD----- 281
             NAGKSSL N +  ++ AIV+   GTTRD++ + +DL GY  K  D AG+R        
Sbjct: 336 APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGYFCKFGDMAGLRSGHIAQAG 395

Query: 282 ----DIVEKEGIKRTFLEVENADLILLLKEINSKKE-------------------ISFPK 318
                 VE+EGI+R       +D+++++  +                        I+  K
Sbjct: 396 QMPIGAVEQEGIRRAKARALESDVVIVVLSLEEGDSGRGVKLVLEPEVIDAVQSCIALEK 455

Query: 319 NIDFIFIGTKSD-------------------------LYSTYTEEYDHLISSFTGE---- 349
           ++       K D                         L     ++   LIS    E    
Sbjct: 456 HMIVAV--NKFDKYTPATNTDGTAQGLVNSLAGEITSLVPHIVQDQIFLISCREAENEQS 513

Query: 350 ------GLEELINKIKSILSNKFKKL--------------PFSIPSHKRHLYHLSQTVRY 389
                  ++ L+ ++                           S+    R   +L + V++
Sbjct: 514 ETADPGNIQTLLKELIRTFKRMSTPSELENGNDKFDKLYWEDSLGVTHRQSSNLQKCVQH 573

Query: 390 L------------EMASLNEKDCGLDII--AENLRLASVSLGKITGC---VDVEQLLDII 432
           L               +  + +  +DI+  AE+LR A+  L KITG     DVE +L ++
Sbjct: 574 LNDFLSQTCQTPDNAGNAEQIELNIDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVV 633

Query: 433 FSK 435
           F K
Sbjct: 634 FEK 636


>gi|119382760|ref|YP_913816.1| tRNA modification GTPase TrmE [Paracoccus denitrificans PD1222]
 gi|205415788|sp|A1AXX6|MNME_PARDP RecName: Full=tRNA modification GTPase mnmE
 gi|119372527|gb|ABL68120.1| tRNA modification GTPase trmE [Paracoccus denitrificans PD1222]
          Length = 419

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 160/435 (36%), Positives = 236/435 (54%), Gaps = 17/435 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA +T      +S++RLSGP      E +       PR A+LR     D  ++D+ L
Sbjct: 2   DTIFAEATPPGRGGVSVVRLSGPKAHATLESLAGP-VATPRMAALRALRDGD-DLIDRAL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F    SFTGE+ AE H+HG   + + + + L     LR A  GEF++RAF NG+IDL
Sbjct: 60  VIWFAEGHSFTGEEVAELHLHGAPVIASRLSQALLAR-GLRRAEAGEFTKRAFLNGRIDL 118

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE LADL+S+ETE QR+L+M    GEL     +   KL    + IEA +DF++EE V 
Sbjct: 119 AEAEGLADLLSAETEAQRKLAMRATEGELGRKADELRSKLIRAGALIEASIDFADEE-VP 177

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +   +E L+ I  +++DI   ++     E +R GY++ I+G  NAGKS+L N + ++++A
Sbjct: 178 DEVPEEALDLIKAVRSDIQGMLASYPATERLRQGYEVAIIGPPNAGKSTLLNRIGQREIA 237

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           +V++I GTTRD+L +  DL G  V   DTAG+RE+ D VE  G+ R       ADL + L
Sbjct: 238 LVSEIAGTTRDILELHTDLRGLPVTFLDTAGLRESSDPVEAMGVARAVQRAAEADLRIHL 297

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                 +E     +   I + +K+DL        +  IS  TGEG+ EL++ +   L  +
Sbjct: 298 SVDGVPEETLVLGD---IIVRSKADL----GRGEETAISGLTGEGVAELLDLVYDRL--R 348

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425
            +     +  HKR    L + V  L      +     + +AE LR A+ +L  + G V  
Sbjct: 349 VRAADSGLVGHKRQAEALQRAVAAL----AIDDSLAPEFLAEALRQAAQALAMMVGRVGA 404

Query: 426 EQLLDIIFSKFCIGK 440
           E  LD IFS FCIGK
Sbjct: 405 EDYLDEIFSSFCIGK 419


>gi|225629758|ref|ZP_03787706.1| tRNA modification GTPase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591387|gb|EEH12479.1| tRNA modification GTPase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 439

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 135/325 (41%), Positives = 198/325 (60%), Gaps = 2/325 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M +  ETIFA+ST    S +++IR+SG    +       KK+  PR A+L   +    ++
Sbjct: 1   MTNTNETIFALSTVFGKSGVAVIRISGNYALKALNHFHIKKEIKPRFATLVDLYDDSSQL 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G++I FP+P SFTGED  E  VHG  AV+  ILEEL+K+    +A PGEFS RAF N
Sbjct: 61  IDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEELSKV--FVMAKPGEFSLRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK DL + E +ADLI +ET+MQ + +++ +SGEL  LY  W  +L  I+S IEA +DF E
Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   +    +++ N++  L   I  H++  + GE +R G  IVI G  N GKS+LFN LA
Sbjct: 179 DIWAEKSELEKINNEVQSLVQLIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K+D+AIV++  GTTRD+L   +D+ GY + +SDTAGIRE+ D +E EGI R       AD
Sbjct: 239 KRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIELEGISRAKKRSFEAD 298

Query: 301 LILLLKEINSKKEISFPKNIDFIFI 325
           L + L     + ++++    +   +
Sbjct: 299 LRIELFPFQQRHDVNYQATGNIPSV 323


>gi|303285410|ref|XP_003061995.1| hypothetical protein MICPUCDRAFT_21154 [Micromonas pusilla
           CCMP1545]
 gi|226456406|gb|EEH53707.1| hypothetical protein MICPUCDRAFT_21154 [Micromonas pusilla
           CCMP1545]
          Length = 545

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 131/497 (26%), Positives = 220/497 (44%), Gaps = 65/497 (13%)

Query: 4   EKETIFAVSTG--ALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF------- 54
           + ETI AV+T        ++I+RLSG +       I +   P   +ASLR          
Sbjct: 54  DSETIAAVATPVVPQAGGVAILRLSGDNALAATSRIFR---PASSRASLRRGECVSHLAL 110

Query: 55  ------GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---- 104
                    G I+D+ L++   +P S+T ED  E H HGG   V  +L  L         
Sbjct: 111 YGDVVDPASGEIVDEALVLPMLAPRSYTTEDVVEIHCHGGSVCVQRVLALLVNAGGDRSG 170

Query: 105 ---------------------LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143
                                +RLA  GEF+ RAF NG+IDL +AE++  L+S++T +  
Sbjct: 171 SGTGGARGTDEEDAKDAAIPAVRLARAGEFTLRAFLNGRIDLTQAEAVQSLVSAKTTVAA 230

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
             ++  + G L++           + + +EA LDF +E D        V   +   +  I
Sbjct: 231 SSALASLRGGLATPVKDARRVCVDLLAELEARLDFDDEMD--PLDEDGVATSVERAEAKI 288

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
              ++  + G ++  G  + I+G  NAGKSSL NA  + + AIVT I GTTRDV+   ++
Sbjct: 289 REVLATARRGALLDAGVVVAIVGRPNAGKSSLLNAWTRSERAIVTPIAGTTRDVVEASIN 348

Query: 264 LEGYLVKISDTAGIRETD--DIVEKEGIKRTFLEVENADLILLLKEIN------------ 309
           + G  V + DTAGIR     D VE  G++R+   +  AD+++ + + +            
Sbjct: 349 VRGVPVTLLDTAGIRFGVGIDEVEAMGVERSRAALAGADVVVFVVDASEGWTDGDDDILR 408

Query: 310 ----SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                +  I      D       +             +S+  G+G+++L   +  ++   
Sbjct: 409 GITGERVVIGDGDGDDDDDEDEDAGEVKDGAFASTVTLSATRGDGVDDLERALAEVIGGG 468

Query: 366 FKKLPF-SIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAENLRLASVSLGKITGCV 423
              +   +  +++R    L+  +  L        +   +D    +LR A+++LG++TG  
Sbjct: 469 DVDVEGAAWVANQRQAEALTTALDALSRLKDTIAEGLPVDFWTIDLREAALALGEVTGED 528

Query: 424 DVEQLLDIIFSKFCIGK 440
             E +LD+IF+KFCIGK
Sbjct: 529 VAEDVLDVIFTKFCIGK 545


>gi|255931495|ref|XP_002557304.1| Pc12g04350 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581923|emb|CAP80062.1| Pc12g04350 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 612

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 158/551 (28%), Positives = 244/551 (44%), Gaps = 111/551 (20%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57
           M     TI+A+ST    +AI+++R+SGP+C  + + +C     P  R A LR  +     
Sbjct: 62  MLDGDSTIYALSTAIGRAAIAVVRVSGPACASIYKSLCPNHPLPKARYAVLRTLYDPTQP 121

Query: 58  ---GRILDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLAN 109
                ILD G L++ FPSP + TGED  E H+HGG A+   +L  +A+       +R A 
Sbjct: 122 PTPNTILDAGALVLYFPSPRTATGEDILELHIHGGPAITKAVLSAIAQTNTPEQTVRYAE 181

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++ L + E+L D +S++TE QRRL++ G S  L + Y +W   L + R
Sbjct: 182 PGEFTRRAFMNDRLSLPQIEALGDTLSADTEQQRRLAVRGSSDALLNRYERWRQGLLYAR 241

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKN---DISSHISQGKLGEIIRNGYKIVILG 226
             +EA +DFSE++     + + V +    ++     I  HI+    GE++RNG ++ +LG
Sbjct: 242 GELEALIDFSEDQHFDESTEELVSSVATQVRALSVQIGFHIANASRGELLRNGIRVALLG 301

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD----- 281
             NAGKSSL N +  K+ AIV+   GTTRD++ + +DL G+  K+ D AGIR        
Sbjct: 302 APNAGKSSLLNRVVGKEAAIVSTEQGTTRDIVDVGVDLGGWYCKLGDMAGIRAEGSGDGE 361

Query: 282 ----DIVEKEGIKRTFLEVENADLILLLKEINSKK---------------EISFPKNIDF 322
                 VEKEGI+R       +D+++++  +                             
Sbjct: 362 TVVIGPVEKEGIRRARERALESDVVIVVVSLEDTATGVRLFVEPEVLGAVNDCVEAGKCL 421

Query: 323 IFIGTKSD-----------------------------LYSTYTEEYDHLISSFTGE---- 349
           I    K D                             +++   EE     SS        
Sbjct: 422 IVAINKCDKLHTTLENGVPQSLSDTIHEVFPSVPADRVFAISCEEAKRGASSLNTTTDPG 481

Query: 350 -------GLEELINKIKSILSNKFKKLPFSIPSHK-------RHLYHLSQTVRYLE---- 391
                  GL     +I S L        + +   +       R   +L   + +L+    
Sbjct: 482 NLQVFLRGLITTFEQIASPLGVDGDGGQYDLSYWEDSLGVTHRQSSNLQICLDHLDDFLS 541

Query: 392 -------------------MASLNEKDCGLDIIAENLRLASVSLGKITGC---VDVEQLL 429
                              +AS  E +  +   AE+LR A+  L KITG     DVE +L
Sbjct: 542 QASSAGCHDDSSREKELGSLASHAESEVDIVTAAEHLRFAADMLAKITGKGESGDVEDVL 601

Query: 430 DIIFSKFCIGK 440
            ++F KFC+GK
Sbjct: 602 GVVFEKFCVGK 612


>gi|301633488|gb|ADK87042.1| tRNA modification GTPase TrmE [Mycoplasma pneumoniae FH]
          Length = 442

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 132/446 (29%), Positives = 230/446 (51%), Gaps = 15/446 (3%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGRILD 62
            K+T+FA++T    SAI IIRLSGP  +++   I  K+ KP   +    +    + + +D
Sbjct: 3   TKQTMFALATAPFNSAIHIIRLSGPDVYRIINQITNKEVKPLGMRIQRVWLIDHNQKKVD 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
             LL  F +P S+TGED  E   HG + +VN I+  L K      A PGEF++R + NGK
Sbjct: 63  DVLLFKFVAPNSYTGEDLIEISCHGSMVIVNEIIGLLLK-HGAVQAQPGEFTQRGYLNGK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           + L +A S+ +L+ S     + +++  ++G++ +     ++KL  +   +E +LD+ E  
Sbjct: 122 MSLNQAASVNNLVLSPNTTLKDVALNALAGQVDARLEPLVEKLGQLVMQMEVNLDYPEYT 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D Q          +L +   ++  +      + +++ +KI I+G++N GKSSL NAL  +
Sbjct: 182 DEQRELVTMNQA-VLQITQILNQIVVGQDQLQRLKDPFKIAIIGNTNVGKSSLLNALLDQ 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIV+ I G+TRD++  D  L G+ VKI DTAGIR+    +EK GI++TF  ++ A+L+
Sbjct: 241 DKAIVSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQHQSALEKAGIQKTFGAIKTANLV 300

Query: 303 LLLKEIN----SKKEISFPK--NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + L +        K I+  K    DF  +  K+DL     ++   +  S   + ++ L++
Sbjct: 301 IYLLDARQPEPDPKIIARLKKLKKDFFLVHNKADLV----QQSFQVSISAKQKQIQPLVD 356

Query: 357 KIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASV 414
            +   L   +  +              L + +  LE   + +++C   DI+  +LR A  
Sbjct: 357 LLTQYLHQFYSVEQNQLYLISDWQTILLQKAIAELEHFLIKQQNCLFFDILVVHLRAAHE 416

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            + ++ G      L++ IF  FC+GK
Sbjct: 417 YILQVLGKNTNYDLINEIFKHFCLGK 442


>gi|295669029|ref|XP_002795063.1| tRNA modification GTPase GTPBP3 [Paracoccidioides brasiliensis
           Pb01]
 gi|226285756|gb|EEH41322.1| tRNA modification GTPase GTPBP3 [Paracoccidioides brasiliensis
           Pb01]
          Length = 627

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 158/541 (29%), Positives = 248/541 (45%), Gaps = 112/541 (20%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-----DGRI 60
           TI+A+ST    +AI+IIR+SGP C Q+ + +C K   P PR ASL   +          I
Sbjct: 87  TIYALSTAPGRAAIAIIRVSGPGCVQIYKALCPKSPLPTPRVASLHTLYDPLLRPSINTI 146

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-----------NLRLAN 109
           LD+ +++ FP+P++ TGED  E HVHGG AVV  +L  + +             ++R A 
Sbjct: 147 LDRAMVLYFPAPKTVTGEDLLELHVHGGPAVVKAVLNAIPRCAKVDFTGSNFPLSIRYAE 206

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++ L + E+L++ +S+ETE QRRL++ G S  L++ Y +W  +L   R
Sbjct: 207 PGEFTRRAFLNDRLSLPQIEALSNTLSAETEQQRRLAIRGTSDALATRYERWHQQLISAR 266

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKN---DISSHISQGKLGEIIRNGYKIVILG 226
             +EA +DFSE++     + + VL+    ++N    I+ H+     GE++RNG K+ +LG
Sbjct: 267 GEMEALIDFSEDQHFDESAEEFVLSVTDEVRNLVRQINLHVENASKGELLRNGIKVALLG 326

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-- 284
             NAGKSSL N +  ++ AIV+   GTTRD++ + +D+ G+  K  D AG+R        
Sbjct: 327 APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGFFCKFGDMAGLRPDHSAQVG 386

Query: 285 -------EKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----------------NI 320
                  EKEGI+R       +D+++++  +      +  K                   
Sbjct: 387 QMPIGAVEKEGIRRAKARALESDVVIVVLSVEECDGGTSAKLVLEPEVVDAVRSCLTLGK 446

Query: 321 DFIFIGTKSD------------------LYSTYTEEYDHL-------ISSFTGEGLEE-- 353
           + I    K D                  L      ++ H+       IS    E  +   
Sbjct: 447 NVIVAVNKVDKCTTSTITAGTREGFFGRLAKEIRSKFPHVAEDQIILISCREAENEQSET 506

Query: 354 ------------LINKIKSILSNKFKKLP----------FSIPSHKRHLYHLSQTVRYL- 390
                       LI   K I +    +             S+    R   +L + V++L 
Sbjct: 507 PDPGNIQTLLGGLIRTFKKISTPAELENEGDQFDQLYWQDSLGVTHRQSSNLQKCVQHLN 566

Query: 391 -------------EMASLNEKDCGLDIIAENLRLASVSLGKITGC---VDVEQLLDIIFS 434
                        E A   E +  +   AE+LR A+  L KITG     DVE +L ++F 
Sbjct: 567 DFLSQTEQTPENAENAEQIELNIDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVVFE 626

Query: 435 K 435
           K
Sbjct: 627 K 627


>gi|67540704|ref|XP_664126.1| hypothetical protein AN6522.2 [Aspergillus nidulans FGSC A4]
 gi|40738672|gb|EAA57862.1| hypothetical protein AN6522.2 [Aspergillus nidulans FGSC A4]
 gi|259480093|tpe|CBF70910.1| TPA: mitochondrial GTPase (Mss1), putative (AFU_orthologue;
           AFUA_6G04950) [Aspergillus nidulans FGSC A4]
          Length = 614

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 161/553 (29%), Positives = 252/553 (45%), Gaps = 119/553 (21%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-------DG 58
           TI+A+ST    +AI+++R+SGP+C  + + +C K   P PR A++R  +           
Sbjct: 62  TIYALSTAPGRAAIAVVRVSGPACVSIYQALCPKAPLPRPRVAAVRTIYDPASDEPCGQA 121

Query: 59  RILDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEF 113
            ILD G L++  P P++ TGED  EFH+HGG A+V  +L  ++K       +R A PGEF
Sbjct: 122 DILDAGALVLYMPGPKTATGEDVLEFHLHGGPAIVKSVLSAISKTSGKEHSVRYAEPGEF 181

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N +++L + E+L D ++++TE QRRL++ G S  LS  Y +W  +L + R  +E
Sbjct: 182 TRRAFMNDRLELPQIEALGDTLAADTEQQRRLAVRGASDALSKRYEKWRQQLLYARGELE 241

Query: 174 ADLDFSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           A +DFSE++     S   VL+    +  L   I+ HI     GE++R+G K+ +LG  NA
Sbjct: 242 ALIDFSEDQYFDESSDDLVLSVSTQVRALSRQIALHIQNASKGELMRSGIKVALLGAPNA 301

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV------ 284
           GKSSL N +  ++ AIV+   GTTRD++ + +DL G+  K+ D AGIR            
Sbjct: 302 GKSSLLNRIVGREAAIVSTEEGTTRDIVDVGIDLGGWYCKLGDMAGIRSEPSSNSPGGAS 361

Query: 285 ------EKEGI------------------------------------------------K 290
                 EKEGI                                                K
Sbjct: 362 LVIGSVEKEGIRRARARAMASDVVVVVISVEEGSDEGAPFRLAMEPDVVDAANECVRAGK 421

Query: 291 RTFLEVENADLILLLKEINSKK---EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
           +  + +   D +  L +  + +   EI+   N  F  +  K     +  E  D L    T
Sbjct: 422 QIIVAINKCDRLPPLDQSEASQVPHEIAQKVNQIFPEVPKKRVFGISCLESSDGLEQPMT 481

Query: 348 GEG---LEELINKIKSILSNKFKKL-----------PFSIPSHKRHLYHLSQTVRYLE-- 391
                 L+ LI+  + + +                   S+    R   +L   ++ LE  
Sbjct: 482 NSWPSFLQGLISTFEEMATPAGVDGDANGQYDRSYWEDSLGVSHRQSSNLQLCLQSLEEF 541

Query: 392 MASLN---------------------EKDCGLDIIAENLRLASVSLGKITGC---VDVEQ 427
           +A  N                     E +  + + AE+LR A+ +L  ITG     DVE 
Sbjct: 542 LAQANPSSSRDTPDGPYSGSPGPDSVESEVDIVVAAEHLRYAADALASITGKGESGDVED 601

Query: 428 LLDIIFSKFCIGK 440
           +L ++F KFC+GK
Sbjct: 602 VLGVVFEKFCVGK 614


>gi|11465467|ref|NP_045142.1| thiophen and furan oxidation protein [Cyanidium caldarium]
 gi|14195300|sp|Q9TLX6|MNME_CYACA RecName: Full=Probable tRNA modification GTPase mnmE
 gi|6466370|gb|AAF12952.1|AF022186_75 unknown [Cyanidium caldarium]
          Length = 465

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 147/465 (31%), Positives = 232/465 (49%), Gaps = 28/465 (6%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-CKKKKPFPRKASLRYFFGLDGR-- 59
           ++++TI A++T      +SI+RLSG     V + +             + Y +  D    
Sbjct: 2   YKRDTIAAIATCPNGGGVSILRLSGSKSIDVVKTVSLVSSNQCWHSHCILYGWIKDNEDQ 61

Query: 60  -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
             +D+ L+++  +P S+T E+  E H H  I + N IL  L K   +RLA PGEF+ RAF
Sbjct: 62  SFVDEVLILLMMAPRSYTAENVVEIHCHASIVLANEILRILVK-QGVRLAKPGEFTMRAF 120

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG+I L + ES+  +I S+T    +L+   +    S    +    L+ + + +E  +DF
Sbjct: 121 LNGRIGLSQVESVLKVIHSKTIASAKLAANTLRRGGSERIRRLKHTLSLLLADLEFHIDF 180

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           S+E    +    E+ + I     DI   IS       +  G K+ I+G  N GKSSL NA
Sbjct: 181 SDEFIDVDSIEDELRSTIQSSLLDIKDLISSYNKVSKLNEGTKVCIIGKPNVGKSSLLNA 240

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           +AK++ +IVT+ PGTTRD+++ +  L   LV++ DTAGIR++ D +EK GI +T L V+ 
Sbjct: 241 IAKRECSIVTNFPGTTRDIVSFETMLGNTLVRLYDTAGIRQSVDEIEKIGISKTELFVDE 300

Query: 299 ADLILLLKEI----NSKKEISFPK----NIDFIFIGTKSD---------LYSTYT--EEY 339
             ++  + +     +S+  + F K    N +F+ +  K D         +Y T       
Sbjct: 301 CQIVFFVLDAIQGLSSEDSVIFNKLNLMNKNFVILINKIDKKVQRKIDEIYETLKCSNRR 360

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM---ASLN 396
              +S+    GLE+L N I  + S +   LP     + ++L  L+     L+     SLN
Sbjct: 361 IIEVSAIKNIGLEKLNNCILDLSSKEDFDLPVHFSVNCKYLEILNNIYLILDELYTGSLN 420

Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVE-QLLDIIFSKFCIGK 440
           +     D IA  LR     L +ITG   VE  +LD IFSKFC+GK
Sbjct: 421 KSVTSYDFIAVELRRVLQGLNQITGDEVVENNVLDAIFSKFCVGK 465


>gi|42520794|ref|NP_966709.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|99034610|ref|ZP_01314568.1| hypothetical protein Wendoof_01000618 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|81831244|sp|Q73GH3|MNME_WOLPM RecName: Full=tRNA modification GTPase mnmE
 gi|42410534|gb|AAS14643.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 508

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 135/325 (41%), Positives = 198/325 (60%), Gaps = 2/325 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M +  ETIFA+ST    S +++IR+SG    +       KK+  PR A+L   +    ++
Sbjct: 1   MTNTNETIFALSTVFGKSGVAVIRISGNYALKALNHFHIKKEIKPRFATLVDLYDDSSQL 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G++I FP+P SFTGED  E  VHG  AV+  ILEEL+K+    +A PGEFS RAF N
Sbjct: 61  IDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEELSKV--FVMAKPGEFSLRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK DL + E +ADLI +ET+MQ + +++ +SGEL  LY  W  +L  I+S IEA +DF E
Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +   +    +++ N++  L   I  H++  + GE +R G  IVI G  N GKS+LFN LA
Sbjct: 179 DIWAEKSELEKINNEVQSLVQLIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K+D+AIV++  GTTRD+L   +D+ GY + +SDTAGIRE+ D +E EGI R       AD
Sbjct: 239 KRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIELEGISRAKKRSFEAD 298

Query: 301 LILLLKEINSKKEISFPKNIDFIFI 325
           L + L     + ++++    +   +
Sbjct: 299 LRIELFPFEQRHDVNYQATGNIPSV 323



 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 8/128 (6%)

Query: 318 KNIDFIFIGTKSDLYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKL-PFS 372
           +N     +    D+ + +  + +      IS     G  +LI+ IK     KF       
Sbjct: 384 QNDTIYVLSKADDVINNHNIKINGIDLLPISILKEIGTNKLISLIKEKAEEKFGHDRDTP 443

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432
           + + +RH  H+ + + +L+  ++   D  +++I+E+LRLA+  LG + G +DVE++L  +
Sbjct: 444 VITRQRHRNHMKKALEHLQRFNI---DNPIELISEDLRLAAFELGAVIGIIDVEEILSSV 500

Query: 433 FSKFCIGK 440
           FS FC+GK
Sbjct: 501 FSNFCVGK 508


>gi|13507747|ref|NP_109696.1| tRNA modification GTPase TrmE [Mycoplasma pneumoniae M129]
 gi|2495119|sp|P75104|MNME_MYCPN RecName: Full=tRNA modification GTPase mnmE
 gi|1673806|gb|AAB95794.1| thiophene and furan oxidation protein [Mycoplasma pneumoniae M129]
          Length = 442

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 131/446 (29%), Positives = 229/446 (51%), Gaps = 15/446 (3%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGRILD 62
            K+T+FA++T    SAI IIRLSGP  +++   I  K+ KP   +    +    + + +D
Sbjct: 3   TKQTMFALATAPFNSAIHIIRLSGPDVYRIINQITNKEVKPLGMRIQRVWLIDHNQKKVD 62

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
             LL  F +P S+TGED  E   HG + +VN I+  L K      A PGEF++R + NGK
Sbjct: 63  DVLLFKFVAPNSYTGEDLIEISCHGSMVIVNEIIGLLLK-HGAVQAQPGEFTQRGYLNGK 121

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           + L +A S+ +L+ S     + +++  ++G++ +     ++KL  +   +E +LD+ E  
Sbjct: 122 MSLNQAASVNNLVLSPNTTLKDVALNALAGQVDARLEPLVEKLGQLVMQMEVNLDYPEYT 181

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D Q          +  +   ++  +      + +++ +KI I+G++N GKSSL NAL  +
Sbjct: 182 DEQRELVTMNQAVVQ-ITQILNQIVVGQDQLQRLKDPFKIAIIGNTNVGKSSLLNALLDQ 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIV+ I G+TRD++  D  L G+ VKI DTAGIR+    +EK GI++TF  ++ A+L+
Sbjct: 241 DKAIVSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQHQSALEKAGIQKTFGAIKTANLV 300

Query: 303 LLLKEIN----SKKEISFPK--NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + L +        K I+  K    DF  +  K+DL     ++   +  S   + ++ L++
Sbjct: 301 IYLLDARQPEPDPKIIARLKKLKKDFFLVHNKADLV----QQSFQVSISAKQKQIQPLVD 356

Query: 357 KIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASV 414
            +   L   +  +              L + +  LE   + +++C   DI+  +LR A  
Sbjct: 357 LLTQYLHQFYSVEQNQLYLISDWQTILLQKAIAELEHFLIKQQNCLFFDILVVHLRAAHE 416

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            + ++ G      L++ IF  FC+GK
Sbjct: 417 YILQVLGKNTNYDLINEIFKHFCLGK 442


>gi|319760161|ref|YP_004124099.1| tRNA modification GTPase [Candidatus Blochmannia vafer str. BVAF]
 gi|318038875|gb|ADV33425.1| tRNA modification GTPase [Candidatus Blochmannia vafer str. BVAF]
          Length = 474

 Score =  327 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 154/490 (31%), Positives = 234/490 (47%), Gaps = 66/490 (13%)

Query: 1   MNHEKETIFAVSTG--------------ALPSAISIIRLSGPSCFQVCEFICKKKKPFPR 46
           M +  +TI A+ST                +P              ++   +   K P PR
Sbjct: 1   MKYYSDTIAAISTPIGRGGIGIIRISGELIP--------------EIALELLG-KVPKPR 45

Query: 47  KASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-L 105
            A    F    G  ++K + + FP P SFTGE+  E H HGG  ++N +L  + ++ + +
Sbjct: 46  TAEYLPFRDKQGSTIEKVITLFFPKPHSFTGENILEIHGHGGYIILNILLSRILEISSKI 105

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           RLANPGEF+ RAF N KIDL++AES+AD+I + +    + +   + G  S+     +DK+
Sbjct: 106 RLANPGEFTERAFLNNKIDLIQAESIADIIDATSYQAAKAAYNSLQGFFSNQIHNILDKI 165

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
            + R  +E+ +DFS+ +D+   S  ++   +  +  +          G ++R+G KI+I 
Sbjct: 166 IYCRMHVESTIDFSD-QDIDTISYNKIKKILKNIITETDKIYKSAYSGSLLRDGIKIIIA 224

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIV 284
           G  NAGKSSLFNAL   D AI++ IPGTTRD L   + L G    I+DTAG++E + + +
Sbjct: 225 GKPNAGKSSLFNALINLDRAIISSIPGTTRDTLYETIQLNGITFHITDTAGLQEHSTNEI 284

Query: 285 EKEGIKRTFLEVENADLILLLKEINS-------------KKEISFPKNIDFIFIGTKSDL 331
           E  GIKR   E++ AD IL + + +S             K   +  K      I  KSDL
Sbjct: 285 ELIGIKRAKNELKLADHILWVVDSSSCSNKYDDMLLPLQKTLPNINKKTTITIIRNKSDL 344

Query: 332 YSTYTEEYDHLI------SSFTGEGLEELINKIKS---------ILSNKFKKLPFSIPSH 376
                  Y          S+    G++ L   + +          L +  ++   +  + 
Sbjct: 345 SLEKNGIYIINGYTCITLSALLNSGIDLLKKYLYNNTKHKIQHYTLPHSIEENQNNFIAR 404

Query: 377 KRHLYHLSQTVRYLEMA--SLNEKDCGLDII----AENLRLASVSLGKITGCVDVEQLLD 430
           +RHL  +    +YL  A   LN   CG+ II    AE+LR A   L KI G    + LL 
Sbjct: 405 QRHLNIIKNAYQYLLSAQKQLNHYYCGVTIINDRFAEDLRYAHDELNKIFGKSTPDNLLK 464

Query: 431 IIFSKFCIGK 440
            IFS FCIGK
Sbjct: 465 KIFSSFCIGK 474


>gi|330991277|ref|ZP_08315228.1| tRNA modification GTPase mnmE [Gluconacetobacter sp. SXCC-1]
 gi|329761296|gb|EGG77789.1| tRNA modification GTPase mnmE [Gluconacetobacter sp. SXCC-1]
          Length = 372

 Score =  327 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 139/382 (36%), Positives = 219/382 (57%), Gaps = 12/382 (3%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ L++ FP P+S+TGEDSAE H+H G AV+N + + L  +   R A PGEFSRRAF 
Sbjct: 2   LLDRALVLWFPGPDSYTGEDSAELHLHAGQAVINAVADALVAL-GARPAEPGEFSRRAFM 60

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           +G++DL++AE +ADLI +ETE QR+ ++  + G  S LY  W D+L  + +  EA +DF 
Sbjct: 61  HGRMDLMQAEGIADLIEAETEAQRQQALSQVDGAQSRLYQHWADRLRTLLAHQEALIDFP 120

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + E++     +E+ N +  L + + +++++G   E +R G    I+G  N GKSSL NAL
Sbjct: 121 D-EELPPEVEQELCNGLRELHDTMQAYLAEGAGAERLRRGLVFAIVGEPNVGKSSLLNAL 179

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A +D AIV+   GTTRD + + + +    V + DTAG+RET+D +E EG++R+   V+ A
Sbjct: 180 AGRDAAIVSSRAGTTRDAIEVRMVMGNVPVTLVDTAGLRETEDEIEAEGVRRSLFHVKQA 239

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
           D ++ +   N         +   + +  K+DL  T   +    IS  T  G++ L   + 
Sbjct: 240 DCVVQVFAGNPAPP---SLDGADVLVCNKTDL--TPAPDGAIGISVLTNTGMDVLRTVLA 294

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAENLRLASVSLGK 418
                       +  +  RH   + +TVR++  A          ++  E +RLA  +LG+
Sbjct: 295 DKARALTAGRAVAPFTRARHRAAIEETVRHIGQALA----MPWPEMRGEEMRLAMRALGR 350

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           +TG VDVE LLD +F +FCIGK
Sbjct: 351 LTGAVDVEALLDTVFGQFCIGK 372


>gi|71894377|ref|YP_278485.1| tRNA modification GTPase TrmE [Mycoplasma synoviae 53]
 gi|123644156|sp|Q4A647|MNME_MYCS5 RecName: Full=tRNA modification GTPase mnmE
 gi|71851165|gb|AAZ43774.1| tRNA modification GTPase ThdF/TrmE [Mycoplasma synoviae 53]
          Length = 463

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 144/466 (30%), Positives = 225/466 (48%), Gaps = 29/466 (6%)

Query: 1   MNHEK--ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD 57
           MN++   +TI A+S+G  +   ISIIR+SG +   +   I   K    +  +   F   +
Sbjct: 1   MNYQSYSDTICAISSGNNINQPISIIRISGKNAQSIVSKIFSGKVGENKTITYG-FIKEN 59

Query: 58  GRILDKGLLIVFPSP--------ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109
             I+D+ L+  F            ++ GE   E + HGG+ V N ILE L      RLA 
Sbjct: 60  SEIVDEVLVSWFLGEPQGDITVYNNYVGEPLIEINAHGGMIVTNKILELLI-SNGARLAE 118

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF NGK+DL +A+++ +LI S+T +Q R     + G  S +    + +L+ + 
Sbjct: 119 PGEFTRRAFLNGKLDLSKADAIHNLIMSKTRLQARNEASKLKGSASKVIKDLLKELSLLI 178

Query: 170 SFIEADLDFSEEEDVQNFSSKEV------LNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
             IE  +D+ E  D      K        L  I  L   +   +   +       G K+ 
Sbjct: 179 GSIEVGIDYPEYIDDYEEDLKANSKEDINLTRINKLIARLEKIVKSSETALNYFEGIKLA 238

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKSSL N + K+D AIVT++ GTTRD++     L+ ++ KI DTAGIR+T   
Sbjct: 239 IVGKPNVGKSSLLNTMLKEDKAIVTNVAGTTRDIVEGIYYLDNFIFKIIDTAGIRKTRQE 298

Query: 284 VEKEGIKRTFLEVENADLILLLKE-INSKKE-------ISFPKNIDFIFIGTKSDLYSTY 335
           +EK GI+R++  + +AD++L L + +NS+ E       I    N ++I +  KSDL S  
Sbjct: 299 IEKIGIERSYKAILDADIVLHLFDNLNSEDEFDLDIKKIVQENNKNYIKVVNKSDLKSDI 358

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
               D +  S     ++ L + +  I S           +  R +    +++ Y   A  
Sbjct: 359 KWSDDFIKISAKNNDIKNLEDHLLKIYSGFDFNSEDIFAT-ARQIKLFKESLEYAYAARE 417

Query: 396 NEKDCGLDIIAE-NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             K+    I A  +L     +L  I G  + E LLD +F  FC+GK
Sbjct: 418 EIKNQLTYITAIVDLNNLFDTLQLIIGNSNREDLLDEMFKNFCLGK 463


>gi|325283727|ref|YP_004256268.1| tRNA modification GTPase mnmE [Deinococcus proteolyticus MRP]
 gi|324315536|gb|ADY26651.1| tRNA modification GTPase mnmE [Deinococcus proteolyticus MRP]
          Length = 443

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 134/443 (30%), Positives = 228/443 (51%), Gaps = 17/443 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGRI 60
            +TI AV+T    + + ++R+SGP    + + +   ++        R+ FG      G +
Sbjct: 11  SDTIAAVATAPGHAGVGVVRVSGPQALHIADALFSGRRRPSSTPGGRFLFGRLLAEGGEV 70

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+GL +VF +P S+TGED AEF  HG  AV+  +L     +   R A PGEF+ RA+  
Sbjct: 71  LDEGLCLVFRAPHSYTGEDVAEFQTHGSPAVLGEVLTRALDL-GARPARPGEFTLRAYLA 129

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DL +AE++ +L+ S TE  RR +  G+SG L          LT   S I A LD+ E
Sbjct: 130 GRLDLAQAEAVLNLVESSTETARRQATLGLSGALGERVDAIARDLTLTLSSIAALLDYPE 189

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
               +    +E    +     ++ + +   + G +   G +I ++G  NAGKSSL NAL 
Sbjct: 190 ----EGVPEEERQVPLARAAAELEALLGTARAGRVANQGARIALIGAPNAGKSSLLNALL 245

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + +IVT + GTTRD L   L L G  V + DTAG+R+T+D+VE  G+++     + AD
Sbjct: 246 GYERSIVTPLAGTTRDYLEAGLSLAGVPVTLVDTAGLRDTEDVVEAAGVRQAHALAQGAD 305

Query: 301 LILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
           ++L L + +  +E   ++ P     I + TK+DL + + +     +S+ TG+GL +L   
Sbjct: 306 VVLTLSDGSQPREPLPLALPAGARAIHLRTKADLPAAWDDPAYLPVSAATGQGLPQLREA 365

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           +   L     +   +    +R      + + ++ +A     +   D+ +  L  A ++L 
Sbjct: 366 LGRELLGDTARGE-AWLGSERQADAARRALEHVRLAQ----ELPDDLASIELEEALLALA 420

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
           ++TG    + ++D +F  FC+GK
Sbjct: 421 ELTGRDVQDDVVDAVFRNFCVGK 443


>gi|268570122|ref|XP_002640697.1| Hypothetical protein CBG19762 [Caenorhabditis briggsae]
          Length = 439

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 146/450 (32%), Positives = 240/450 (53%), Gaps = 29/450 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+S+G LPSAI++ R+SGP    +   + ++K   P+       +    RI+D+ + 
Sbjct: 3   TIFALSSGTLPSAIAVFRVSGPQSLPILRQLSRRKVWTPKMMEFTKLYDSQRRIIDESMA 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP P++FTGED+AEF +HG  AV       L+++ N+R A  GEF+RRAF NGK+ + 
Sbjct: 63  VYFPGPKTFTGEDTAEFFLHGSQAVAQKFATCLSEIENVREAKRGEFTRRAFHNGKMSIS 122

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           E   L  LI S TE +RR +   M G   ++  +   KL  I S +   +DF E   ++ 
Sbjct: 123 EVRGLDRLIRSRTEKERRAAFGQMRGGTRAV--EIRKKLVEILSKLFVIIDFGEHVALEL 180

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            ++++   D+  +  +I+  I   +  E  + G +IV+ G  N+GKSS+ N LA  DVAI
Sbjct: 181 SAAQK---DVAEILAEINRLILAWEGAERAQRGLEIVLYGRPNSGKSSILNQLAHDDVAI 237

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLL 305
           V++IPGTTRD L   + + G   +++DTAGIR  T+D++E EGI+R    +E+AD+I  +
Sbjct: 238 VSEIPGTTRDSLVTTIQINGIRCRLTDTAGIRPHTNDVIEAEGIRRAQRRLESADVICFV 297

Query: 306 KEINSK--------KEISFPKNI--DFIFIGTKSDLYSTYTE---EYDHLISSF--TGEG 350
            +  S+        +++   KN     + +  K+DL   Y E      H++SS   + EG
Sbjct: 298 VDPESRSDDVANILEDVKKLKNPESKVLIVKNKADLKLPYPEVSSSGIHVVSSHATSSEG 357

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
            ++L   + S++     +  F +         L +    L  + L +      I+ +++ 
Sbjct: 358 CQKLRETLGSLVDQLCPETNFLL-----DAELLRKCSDELTCSMLCQDAA---IMCQHIE 409

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                + ++T     E +LD IFS+FCIGK
Sbjct: 410 KGLEHIAELTQGTVTESVLDGIFSQFCIGK 439


>gi|284931758|gb|ADC31696.1| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str. F]
          Length = 453

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 232/447 (51%), Gaps = 15/447 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI+A++T    SAI +IRLSGP  F++   IC K+               + +++D  L
Sbjct: 10  ETIYALATAPYNSAIHVIRLSGPDAFEIINKICDKQINKEGYRIQNARIVDNDQVIDDVL 69

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+ F +P+SFTGEDS E + HGG+ V+N I+  L       LA  GEFS+R++ N KIDL
Sbjct: 70  LMKFVAPKSFTGEDSIEINCHGGLFVINKIM-ALLNKHGAHLAQRGEFSKRSYINKKIDL 128

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +A ++ DLI ++  +    S++ +SGE S        ++  +   +E  +D+ E ED +
Sbjct: 129 NQATAIHDLIFAKNNLSHSASIKALSGEFSKDIKNIQQEIFKLIGLVEIAIDYPEYEDEK 188

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              ++E  N +  ++  +   +++    + I  G KI I+G  NAGKSSL N+L  +  A
Sbjct: 189 KELTEEFKN-LTNIRQKLQRIVNKSLKLKQISEGIKIAIVGEPNAGKSSLLNSLLNEQKA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVK-ISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           IVT+IPGTTRD +   + L   L+  + DTAGIR++ D +E+ GI ++F  ++ +DL++ 
Sbjct: 248 IVTNIPGTTRDTVEGQIVLNDQLIINLIDTAGIRKSSDQIEQIGINKSFKTIDKSDLVIY 307

Query: 305 LKEINSKKEIS--------FPKNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELI 355
           L ++N  +             K   F+ +G K D +  T       +  S     + +LI
Sbjct: 308 LIDLNKYQNYDKTNIYKYLINKKKQFVLVGNKVDEVDPTLNTGEIQIKISAKNNDISDLI 367

Query: 356 NKIKS--ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
             ++   +     +    SI   +  +  L   +  + +  LN+ +   D++ ++L  A+
Sbjct: 368 KYLEETSLAIFNDENKQDSIFQEEWQINLLQTALYNINL-ILNDLNQYHDLVIQHLNEAN 426

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            SL K+    +   L+D IF  FC+GK
Sbjct: 427 NSLLKVLSEYEDYNLIDEIFKNFCLGK 453


>gi|116514958|ref|YP_802587.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|122285646|sp|Q058F5|MNME_BUCCC RecName: Full=tRNA modification GTPase mnmE
 gi|116256812|gb|ABJ90494.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 454

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 142/429 (33%), Positives = 238/429 (55%), Gaps = 23/429 (5%)

Query: 31  FQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIA 90
            ++ +    K     R A    F+ +   +LD+G+ + F +P+SFTGE+  EFH HG   
Sbjct: 30  LKIIKK-FLKISMKERFAYFSSFYDVKNNLLDQGIALFFLAPKSFTGENILEFHSHGNPI 88

Query: 91  VVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM 150
           +++ +++ +  + N+R+ANPGEFS+RAF N KIDL++AE++ D+I++E+ +  + ++  +
Sbjct: 89  ILDLLIKNILTIKNVRIANPGEFSKRAFLNNKIDLVQAEAINDIINAESHLSVKAALSSL 148

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF-LKNDISSHISQ 209
            G  S    + +  L  I S IEA ++F E  ++ + + ++ +   L  +   I++ + +
Sbjct: 149 RGTFSKKINKILFNLKDIYSEIEAIINFPE--ELNDLNIQKNIKKKLSFIIKMITNLLDE 206

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
                I  N  KIVI G  N GKSSL N L+K+ V+IVT+IPGTTRDV+  ++   G   
Sbjct: 207 THKNYIFSNTIKIVIAGPPNVGKSSLLNFLSKEKVSIVTNIPGTTRDVIHKNIWFNGVCC 266

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKN 319
           +  DTAG++++ DI+E  GIK     +++ + I L+ ++  KK I          +  KN
Sbjct: 267 EFLDTAGLQKSQDIIEVIGIKLAKKHIKSCNHIFLMFDVTKKKMINNNFIKNIVNNLKKN 326

Query: 320 IDFIFIGTKSDLYST-------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            +  FI  K DL +        Y +     +S     G+E L NKI  I +     +  +
Sbjct: 327 QNITFIFNKIDLINKKPYISIIYKKFECIYLSLKKNIGIEYLKNKILEI-TTLHNNVEST 385

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
             + KRH+  L +++ YL     N  K+  L+++++++RL+   L KITG  + E LLD 
Sbjct: 386 FLAKKRHISALKKSLMYLINGKRNWMKNLYLELLSDDIRLSIKYLLKITGKFNSEDLLDK 445

Query: 432 IFSKFCIGK 440
           IFSKFCIGK
Sbjct: 446 IFSKFCIGK 454


>gi|126324169|ref|XP_001370184.1| PREDICTED: similar to mitochondrial GTP binding protein 2
           [Monodelphis domestica]
          Length = 429

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 141/438 (32%), Positives = 213/438 (48%), Gaps = 50/438 (11%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYF-FGLDGRILDKG 64
           TIFA+S+G     +++IR SGP+       +   +  P PR A LR     +    LD+G
Sbjct: 38  TIFALSSGQGKCGVAVIRTSGPASGPAVLGLAALRALPQPRLAKLRLLKHPVSSEPLDRG 97

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGED AEFHVHGG AVV+ +L  L  +P  R A  GEF++RAF+NGK+ 
Sbjct: 98  LVLWFPGPHSFTGEDCAEFHVHGGPAVVSAVLGALGGVPGCRPAEAGEFTKRAFQNGKLS 157

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E L DLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DFSE++++
Sbjct: 158 LTEVEGLGDLIHAETEAQRRQALRQLQGELGQLCRAWGETLTTALAHLEAYIDFSEDDNI 217

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    + V   +  L+  + +H+   + G+ +R+G  +VI G +NAGKSSL N L ++  
Sbjct: 218 EEGVLEWVDGTVQGLREALEAHLQDARRGQRLRSGAHVVIAGPANAGKSSLINLLTRQ-- 275

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                   +T+         +G +V   D +               R  L +  ADL   
Sbjct: 276 -------PSTKGPAQGHAASQGTVVTPGDPSASP------------RILLVLNKADL--- 313

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           L +  +    + P ++                       S  T  GLE ++  +K  L+ 
Sbjct: 314 LPKGGAPGGATLPPHLLL---------------------SCKTEAGLEAVLAALKKELAA 352

Query: 365 KFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
                     + +  RH +HL   +  L     +     L + AE LR A   LG +TG 
Sbjct: 353 VCGDPTVGPPVLTRARHRHHLQSCLEALRGYGRSRAR-DLALAAEELREARRQLGHLTGQ 411

Query: 423 VDVEQLLDIIFSKFCIGK 440
              +Q+L++IF  FCIGK
Sbjct: 412 GRPDQILEVIFRDFCIGK 429


>gi|254510896|ref|ZP_05122963.1| tRNA modification GTPase TrmE [Rhodobacteraceae bacterium KLH11]
 gi|221534607|gb|EEE37595.1| tRNA modification GTPase TrmE [Rhodobacteraceae bacterium KLH11]
          Length = 386

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 158/394 (40%), Positives = 230/394 (58%), Gaps = 11/394 (2%)

Query: 49  SLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLA 108
            +R     DG  LD+GL++ F +P SFTGED AE  +HG  A VN +L  L+ M +LRLA
Sbjct: 2   CVRTLAAPDGSRLDEGLVLTFQAPSSFTGEDVAELQIHGSSASVNAVLRCLSGMDDLRLA 61

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
           +PGEF+RRA ENGK+DL + E LADLI +ETE QR+ +   ++G L +L   W   L   
Sbjct: 62  DPGEFTRRALENGKMDLAQVEGLADLIDAETEAQRKQAQAILAGALGTLAEGWRRDLIRA 121

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
            S +EA +DF++ E+V    + EV   I+ +K+D+S   +  ++ E IR G+++ I+G  
Sbjct: 122 ASLLEAVIDFAD-EEVPTDVTPEVRALIVSVKDDLSREANGVQIAERIRAGFEVAIVGLP 180

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           NAGKS+L NALA ++ AI ++  GTTRDV+ + +DL G  V + DTAG+R+T+D VE  G
Sbjct: 181 NAGKSTLLNALAGREAAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRDTEDHVENLG 240

Query: 289 IKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           I+      E+ADL + L +      I+     D I +  KSDL     +      S  TG
Sbjct: 241 IELARKRAESADLRVFLTDTPDVLGIAV--QPDDIHVLPKSDLREDTADGI----SGKTG 294

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIA 406
            G++ LIN I  +LSN+       I + +RH   +++ +  L  A    +      DI A
Sbjct: 295 YGIDRLINNISCVLSNRTTSH--GIATRERHRIAMTKAIESLTAALAVLESGPDMYDIAA 352

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E +R A  +L  + G +DVE LLD IF+ FC+GK
Sbjct: 353 EEMRTAIRALESLVGRIDVETLLDEIFASFCLGK 386


>gi|225619284|ref|YP_002720510.1| tRNA modification GTPase TrmE [Brachyspira hyodysenteriae WA1]
 gi|254811473|sp|C0QXH9|MNME_BRAHW RecName: Full=tRNA modification GTPase mnmE
 gi|225214103|gb|ACN82837.1| tRNA modification GTPase TrmE [Brachyspira hyodysenteriae WA1]
          Length = 464

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 141/460 (30%), Positives = 247/460 (53%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--------KKKKPFPRKASLRYFFGL 56
           K+TI A+ST    SA++IIR+SG    ++   IC               RK+        
Sbjct: 7   KDTIAALSTPYSKSALAIIRMSGSKALEIASKICFYANNENKNINNFEHRKSYYALIKDE 66

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +   +D+ +++   SP +FT ED+ EF  HG I V++ ++  L K    R AN GEF+ R
Sbjct: 67  NNIPVDEVIVLSSLSPNTFTSEDTIEFISHGSIVVIDALMNLLIK-NGARAANRGEFTYR 125

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           A+ NG+I + EAE++ DLI S  ++    S+  M G L+    +  + + +    +  +L
Sbjct: 126 AYINGRIGISEAEAIHDLIDSNNKLMAEASIYKMRGRLTREIDKLRENIKNSLMLVYGEL 185

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF E+E  ++FS  +++ +   +K DI + +S  K  E + NG K+ ILG  NAGKSS+F
Sbjct: 186 DFPEDE-TESFSYDKLIENFEIIKKDIENILSNSKRVENLINGIKVAILGRVNAGKSSIF 244

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLE 295
           N +  ++ AIV++I GTTRD L+ ++ +E     + DTAG  ++ D+ +E EGI+R    
Sbjct: 245 NMILDRERAIVSNIAGTTRDFLSENIYIENIPFYLMDTAGFHKKADNDIELEGIERAKKC 304

Query: 296 VENADLILLLKEINS---KKEISFP------KNIDFIFIGTKSDLYSTYTEEYD----HL 342
              +D+IL + + +    + +I+        +N + I+I  KSD    + +E D      
Sbjct: 305 AYESDIILAVFDGSDIANEDDINLIEFLNALENKNIIYILNKSDEDKKFNKEIDNANIIN 364

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400
           IS+ T +G ++LI+ +K  +S+    +       + R   +L   ++ +++    + +  
Sbjct: 365 ISTKTKDGKDKLISALKDYVSDSDMDIFNKETYVNNRERCYLENGLKQIDICIKKSLESY 424

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD +AE + + +  LG ++G VD E++++ IF+ FCIGK
Sbjct: 425 SLDEVAEEMNILNNILGNVSGKVDAEEVINEIFANFCIGK 464


>gi|294660633|ref|NP_853501.2| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str.
           R(low)]
 gi|298286914|sp|Q7NAD9|MNME_MYCGA RecName: Full=tRNA modification GTPase mnmE
 gi|284812296|gb|AAP57069.2| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str.
           R(low)]
 gi|284931001|gb|ADC30940.1| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str.
           R(high)]
          Length = 453

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 139/447 (31%), Positives = 232/447 (51%), Gaps = 15/447 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI+A++T    SAI +IRLSGP  F++   IC K+               + +I+D  L
Sbjct: 10  ETIYALATAPYNSAIHVIRLSGPDAFEIINKICDKQITKEGYRIQNARIVDNDQIIDDVL 69

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L+ F +P+SFTGEDS E + HGG+ V+N I+  L       LA  GEFS+R++ N KIDL
Sbjct: 70  LMKFVAPKSFTGEDSIEINCHGGLFVINKIM-ALLNKHGAHLARRGEFSKRSYINKKIDL 128

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +A ++ DLI ++  +    S++ +SGE S        ++  +   +E  +D+ E ED +
Sbjct: 129 NQATAIHDLIFAKNNLSHSASIKALSGEFSKDIKNIQQEIFRLIGLVEIAIDYPEYEDEK 188

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              ++E  N +  ++  +   +++    + I  G KI I+G  NAGKSSL NAL  +  A
Sbjct: 189 KELTEEFKN-LTNIRQKLQRIVNKSLKLKQISEGIKIAIVGEPNAGKSSLLNALLNEQKA 247

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVK-ISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           IVT+IPGTTRD +   + L   L+  + DTAGIR++ D +E+ GI ++F  ++ +DL++ 
Sbjct: 248 IVTNIPGTTRDTVEGQIVLNDELIINLIDTAGIRKSSDQIEQIGINKSFKTIDKSDLVIY 307

Query: 305 LKEINSKKEIS--------FPKNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELI 355
           L ++N  +             K   F+ +G K D +  T       +  S     + +LI
Sbjct: 308 LIDLNKYQNYDKTNIYKYLINKKKQFVLVGNKVDEVDPTLNTGEIQIKISAKNNDISDLI 367

Query: 356 NKIKS--ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
             ++   +     +    SI   +  +  L   +  + +  LN+ +   D++ ++L  A+
Sbjct: 368 KYLEETSLAIFNDENKQDSIFQEEWQINLLQTALYNINL-ILNDPNQYHDLVIQHLNEAN 426

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            SL K+    +   L+D IF  FC+GK
Sbjct: 427 NSLLKVLSEYEDYNLIDEIFKNFCLGK 453


>gi|317060108|ref|ZP_07924593.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D12]
 gi|313685784|gb|EFS22619.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D12]
          Length = 390

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 126/392 (32%), Positives = 213/392 (54%), Gaps = 18/392 (4%)

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ +  +P ++T ED  E + HGG  +   ILE L      RLA  GEF+RRAF +G+ID
Sbjct: 1   MVSIMKAPNTYTREDIVEINCHGGYLITEKILE-LVLSSGARLAEVGEFTRRAFFHGRID 59

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ D+I  +TE    +S+  + G+L          + ++ + I   LD+ EE  +
Sbjct: 60  LTQAEAVMDIIHGKTEKSLSVSINQLRGDLKEKIISLKKAILNLAAHINVVLDYPEEG-I 118

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    + +LN++  +  +I   IS  + G++I+ G K VI+G  N GKSSL N++ +++ 
Sbjct: 119 EEPIPENLLNNLRKVSIEIQELISSYQKGKMIKEGVKTVIIGKPNVGKSSLLNSILREER 178

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVT + GTTRDV+   ++++G  + + DTAGIR+T D VE  G+ ++   ++ ADL+L 
Sbjct: 179 AIVTQVAGTTRDVIEEVINIKGIPLILVDTAGIRDTTDFVENIGVMKSKEFLQKADLVLF 238

Query: 305 LKEINSKKE-------ISFPKNIDFIFIGTKSDLYSTY------TEEYDHLISSFTGEGL 351
           + + + +         IS  +N   I I  K+DL            +    +S+    G+
Sbjct: 239 VLDASQELSKEDREIYISLQENQKVIGILNKTDLEKKIQVSSLSKIKNWIEVSAMKCIGI 298

Query: 352 EELINKIKS-ILSNKFKKLPF-SIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAEN 408
           EE+  KI   IL  K ++     I ++ RH   L +T   +  + S  E+   +D++A +
Sbjct: 299 EEMEEKIYQYILQEKVEENSQKLILTNIRHKAALEKTNGAIKNIFSTVEQGLPMDLMAVD 358

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ A  SL +ITG +  E +LD IF  FC+GK
Sbjct: 359 IKEALDSLSEITGEISTEDVLDHIFHNFCVGK 390


>gi|238022844|ref|ZP_04603270.1| hypothetical protein GCWU000324_02764 [Kingella oralis ATCC 51147]
 gi|237865652|gb|EEP66790.1| hypothetical protein GCWU000324_02764 [Kingella oralis ATCC 51147]
          Length = 390

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 132/369 (35%), Positives = 200/369 (54%), Gaps = 25/369 (6%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESF 75
               + +IR+SG     + + I   K P PR A    F    G  +D G+L+ F +P SF
Sbjct: 22  GRGGVGVIRISGSQLLPIAQAITGGKTPKPRTALYTDFLDEHGNAIDNGILLYFAAPASF 81

Query: 76  TGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLI 135
           TGED  E   HGG  V+  +L    ++   R+A  GEF++RAF N K+DL +AES+ADLI
Sbjct: 82  TGEDVIELQGHGGQIVLQMLLNRCLQL-GARIAEAGEFTKRAFLNNKLDLAQAESVADLI 140

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            + ++   R+++  + G  S+     +D L  +R  +EA LDF E E++    + +    
Sbjct: 141 DASSQAAARMAVRSLKGAFSNRIHALVDDLITLRMLVEATLDFPE-EEIDFLEAADAKGK 199

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +  L+N++S+ +S    G I+R G  +V++G  N GKSSL NALA  D+AIVT I GTTR
Sbjct: 200 LAALQNELSTILSTAGQGAILREGMNVVLVGAPNVGKSSLLNALAGDDIAIVTHIAGTTR 259

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSK 311
           D +   + L+G  + I+DTAG+RETDD+VEK GI+R+   V+NAD+ L+L +    IN+ 
Sbjct: 260 DTVREHITLDGVPIHITDTAGLRETDDLVEKIGIERSEKAVQNADVALILIDPAEGINAA 319

Query: 312 KEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHLI----------------SSFTGEGLE 352
            +      P ++  I I  K+DL +      D+ I                S+ TG GL+
Sbjct: 320 TQAILNKLPSSLTRIVIHNKADLRNETPSRVDNQIGSLKIKTDTPATLIKLSAKTGAGLD 379

Query: 353 ELINKIKSI 361
            L   +   
Sbjct: 380 LLKQALLDA 388


>gi|241759134|ref|ZP_04757242.1| putative tRNA modification GTPase TrmE [Neisseria flavescens SK114]
 gi|241320553|gb|EER56830.1| putative tRNA modification GTPase TrmE [Neisseria flavescens SK114]
          Length = 300

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 114/286 (39%), Positives = 170/286 (59%), Gaps = 2/286 (0%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+  + TI A++T      + +IRLSG +   + + +   K P PR A    F G DG  
Sbjct: 1   MSATQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGHP 60

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+L+ F +P SFTGED  E   HGG  V++ +L    ++   R+A PGEF++RAF N
Sbjct: 61  IDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AES+ADLI + ++   R+++  + G  S    + +D L  +R  +EA LDF E
Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            ED+    + +    +  L+  + + ++  + G I+R G  +V++G  N GKSSL NALA
Sbjct: 180 -EDIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             D+AIVTDI GTTRD +   + L G  V I DTAG+RETDD+VE+
Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLNGVPVHIIDTAGLRETDDVVEQ 284


>gi|308490486|ref|XP_003107435.1| hypothetical protein CRE_14041 [Caenorhabditis remanei]
 gi|308251803|gb|EFO95755.1| hypothetical protein CRE_14041 [Caenorhabditis remanei]
          Length = 443

 Score =  325 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 154/453 (33%), Positives = 237/453 (52%), Gaps = 32/453 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+S+G LPSAI++ R+SGP    V   + ++K   P+       +  + RI+D+ + 
Sbjct: 4   TIFALSSGTLPSAIAVFRVSGPQSLPVLRQLSRRKIWTPKMMEYTKLYDSERRIIDEAMA 63

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP P++FTGED+AEF +HG  AV       L+++ N+R A  GEF+RRAF NGK+ + 
Sbjct: 64  VYFPGPKTFTGEDTAEFFLHGSQAVATKFATCLSEIENVREAKRGEFTRRAFHNGKMSIS 123

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
               L  LI S TE +RR +   M G + ++  +   KL  I S +   +DF E  ++Q 
Sbjct: 124 GVRGLDRLIRSRTEKERRAAFGKMRGGVRAV--EIRKKLVQILSKLFVIIDFGEHVELQ- 180

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              +E   D+  +  +I+  I+     E  + G  IV+ G  N+GKSS+ N LA  DVAI
Sbjct: 181 --LEEAQRDVSEILQEINRMIAAWNGAERAQRGLNIVLYGRPNSGKSSILNQLAHDDVAI 238

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLL 305
           V+ IPGTTRD L   L + G L +++DTAGIR  TDD++E EG++R    +E AD+I+++
Sbjct: 239 VSSIPGTTRDSLVTSLQINGVLCRLTDTAGIRRLTDDVIEAEGMRRAQQRLECADIIIVV 298

Query: 306 KEINS-KKEISFPKNI---------DFIFIGTKSDLYSTYTEEYDHLISSFT-------- 347
            +  S   +++   N            I +  K+DL   Y E     +            
Sbjct: 299 VDPESTSDDVAAILNDVEELKSGESKVIIVKNKTDLKLPYPEVLIDSMKKCHVVSTYATS 358

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
             G EEL NK+ S++     +  F +         L +    L  + L +      I+  
Sbjct: 359 SNGCEELRNKLGSLVEELCPEANFLL-----DAELLRKCSDELTCSMLCQDAA---IMCS 410

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  A  S+G++T  +  E +LD IFSKFCIGK
Sbjct: 411 HIETALESIGELTEGIVNENVLDGIFSKFCIGK 443


>gi|317054820|ref|YP_004103287.1| tRNA modification GTPase TrmE [Ruminococcus albus 7]
 gi|315447089|gb|ADU20653.1| tRNA modification GTPase TrmE [Ruminococcus albus 7]
          Length = 455

 Score =  325 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 125/455 (27%), Positives = 210/455 (46%), Gaps = 23/455 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFG--LDG-RIL 61
           T+ A+S       IS+IR+SG +       + K    +   +       +G   DG + +
Sbjct: 3   TVCAISPPLAEGGISVIRISGENAINCAAEVFKPFTCESVEKMQGYTCAYGQIHDGDKTV 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D G+L VF +P S+TGED  E   HGGI V   +L  L        A  GEF++RA  NG
Sbjct: 63  DDGVLTVFRAPHSYTGEDVCEISCHGGIYVTKKVL-RLCLENGCEPAQAGEFTKRAMLNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+ L +AE++ D I+++ E     +     G L     +    L  +   + A +D+ E 
Sbjct: 122 KLSLTQAEAVMDTIAAQGEYALASANLTRQGSLFGQIHEVTGDLVKLLGELAAWVDYPE- 180

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+       +   I    +     I+    G +I+ G   VI G  N GKS+L N L  
Sbjct: 181 EDLPAVEETALRESIGKALSVTGKLIADHDNGMLIKQGIDTVIAGKPNVGKSTLMNLLLG 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            D +IVT++ GTTRDV+     L   + ++SDTAGIR+T+D VEK G++     ++    
Sbjct: 241 YDRSIVTEVAGTTRDVIEESAKLGELVFRLSDTAGIRDTEDRVEKIGVEMAEKRLDECMF 300

Query: 302 ILLLKEIN---SKKEISFPKNIDFI-----FIGTKSDLYSTYTE-------EYDHLISSF 346
           ++ + + +    + +I+  + +         +  KSDL S   E       E    IS+ 
Sbjct: 301 VIEVFDTSVRPDEDDIALLEKVKASGKRSLIVLNKSDLESAVDEGFFRGYSENIVYISAK 360

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDII 405
             +   ++   ++ I + +      +I +++R    L +    L+ A    +    LD +
Sbjct: 361 NRDDRAQIQAAVEKIFTPENYDANSTIFANERQKQCLDKAHTNLKAALEALDMGETLDAV 420

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +  A+ SL ++TG    E ++  +FSKFC+GK
Sbjct: 421 TVMVDFAADSLLELTGEKATEAVVAEVFSKFCVGK 455


>gi|295103710|emb|CBL01254.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii SL3/3]
          Length = 456

 Score =  325 bits (834), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 128/455 (28%), Positives = 216/455 (47%), Gaps = 24/455 (5%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-------KASLRYFFGLDGR 59
           TI A++T      I+++RLSG   + V   +     P  +        A   +F   +  
Sbjct: 5   TIAAIATPPGAGGIAVVRLSGAESYAVAARVFHPANPAKKVEQAKGYTALFGHFVDRE-E 63

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
             D+G+ + F +P S+TGED  E   HGG AV   ++E          A PGE++RRAF 
Sbjct: 64  AFDEGVALFFRAPHSYTGEDVVELSCHGGSAVARRLVEACLAAGAQ-PAAPGEYTRRAFL 122

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NGK+ L +AE++ DLI+++      L+   + G L+        +LT +++ + A +DF 
Sbjct: 123 NGKLGLTQAEAVMDLIAADGRRGAALANAALGGALAKKINAQKAQLTALQAHLAAWVDFP 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E EDV       +   +  ++ ++   I     G ++R G    I+G  NAGKS+L N L
Sbjct: 183 E-EDVPELDPAHLRTVLGAVREELDGLIRSYDAGAVLREGVDCAIVGRPNAGKSTLLNLL 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A  D AIVT + GTTRDV+   + L    + + DTAG+RET+D +E EGI+R++ ++E A
Sbjct: 242 AGFDRAIVTPVAGTTRDVVEQAVQLGDIRLNLFDTAGLRETEDAIEAEGIRRSWKKLEEA 301

Query: 300 DLILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLI------SSFT 347
            LIL + + +   S+++++  +       I +  K D  + +  E               
Sbjct: 302 GLILAVFDGSEPPSREDLALAQRCAGRPAIALVNKEDKPTQFDAELIAPYFAMVLPVCCR 361

Query: 348 GEGLEELI-NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR-YLEMASLNEKDCGLDII 405
            EG  ++I   +  +L         +  S +R L    +                GLD +
Sbjct: 362 EEGSRKVIAAAVARLLGTGSIDPHAASLSGQRQLSAALRARDAVAGALDAAAGGFGLDAV 421

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +  +  A  +L  +TG    E +++ +F +FC+GK
Sbjct: 422 SVCVDDALDALCDLTGENASEAVIEQVFERFCVGK 456


>gi|329565807|gb|AEB92240.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
 gi|329565811|gb|AEB92242.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
          Length = 404

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 214/401 (53%), Gaps = 22/401 (5%)

Query: 39  KKKKPFPRKASLRYFFGLDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGI 95
            K     +  +L Y   +D     + D+ L+ +   P ++T ED  E + HGGI V + I
Sbjct: 6   PKNIKKVKSHTLHYGHIVDPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKI 65

Query: 96  LEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS 155
           LE + K    RLA PGEF++RAF NG+IDL +AE++ D+I+++T +  + + + +SG + 
Sbjct: 66  LELVLK-QGARLAEPGEFTKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIG 124

Query: 156 SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
               +  DK+  + + + A +DF E +DV+    KE+L     +  DI   I   + G +
Sbjct: 125 QKMKELKDKIMGLLAHLLALIDFPE-DDVEELERKEMLETAKEIVKDIDKLIVSSESGRV 183

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR G K  I+G  N GKSSL NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTA
Sbjct: 184 IREGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTA 243

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKS 329
           GIR+TD++VEK G+ ++   +  ADLIL + + + +      +        + +F+  K 
Sbjct: 244 GIRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKNIVFVLNKI 303

Query: 330 DLYSTYTEE---------YDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRH 379
           DL     E+             +S+    GL+EL + I +++      +    I ++ RH
Sbjct: 304 DLPKKIDEKELKNLTKDGIIIEVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRH 363

Query: 380 LYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKI 419
              L    +Y+E +    E++   D+I  +L  A   +GKI
Sbjct: 364 KEALINAKKYMESVVEAIEREYSEDLITIDLNAALEQIGKI 404


>gi|329565809|gb|AEB92241.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
          Length = 404

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 214/401 (53%), Gaps = 22/401 (5%)

Query: 39  KKKKPFPRKASLRYFFGLDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGI 95
            K     +  +L Y   +D     + D+ L+ +   P ++T ED  E + HGGI V + I
Sbjct: 6   PKNIKKVKSHTLHYGHIVDPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKI 65

Query: 96  LEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS 155
           LE + K    RLA PGEF++RAF NG+IDL +AE++ D+I+++T +  + + + +SG + 
Sbjct: 66  LELVLK-QGARLAEPGEFTKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIG 124

Query: 156 SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
               +  DK+  + + + A +DF E +DV+    KE+L     +  DI   I   + G +
Sbjct: 125 QKMKELKDKIMGLLAHLLALIDFPE-DDVEELERKEMLKTAKEIVKDIDKLIVSSESGRV 183

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR G K  I+G  N GKSSL NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTA
Sbjct: 184 IREGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTA 243

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKS 329
           GIR+TD++VEK G+ ++   +  ADLIL + + + +      +        + +F+  K 
Sbjct: 244 GIRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKNIVFVLNKI 303

Query: 330 DLYSTYTEE---------YDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRH 379
           DL     E+             +S+    GL+EL + I +++      +    I ++ RH
Sbjct: 304 DLPKKIDEKELKNLTKDGIIIEVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRH 363

Query: 380 LYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKI 419
              L    +Y+E +    E++   D+I  +L  A   +GKI
Sbjct: 364 KEALINAKKYMESVVEAIEREYSEDLITIDLNAALEQIGKI 404


>gi|329565801|gb|AEB92237.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
          Length = 404

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 213/401 (53%), Gaps = 22/401 (5%)

Query: 39  KKKKPFPRKASLRYFFGLDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGI 95
            K     +  +L Y   +D     + D+ L+ +   P ++T ED  E + HGGI V + I
Sbjct: 6   PKNIKKVKSHTLHYGHIVDPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKI 65

Query: 96  LEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS 155
           LE + K    RLA PGEF++RAF NG+IDL +AE++ D+I+++T +  + + + +SG + 
Sbjct: 66  LELVLK-QGARLAEPGEFTKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIG 124

Query: 156 SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
               +  DK+  + + + A +DF E +DV+    KE+L     +  DI   I   + G +
Sbjct: 125 QKMKELKDKIMGLLAHLLALIDFPE-DDVEELERKEMLETAKEIVKDIDKLIVSSESGRV 183

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR G K  I+G  N GKSSL NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTA
Sbjct: 184 IREGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTA 243

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKS 329
           GIR+TD++VEK G+ ++   +  ADLIL + + + +      +        + +F+  K 
Sbjct: 244 GIRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKNIVFVLNKI 303

Query: 330 DLYSTYTEE---------YDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRH 379
           DL     E+             +S     GL+EL + I +++      +    I ++ RH
Sbjct: 304 DLPKKIDEKELKNLTKDGIIIEVSPVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRH 363

Query: 380 LYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKI 419
              L    +Y+E +    E++   D+I  +L  A   +GKI
Sbjct: 364 KEALINAKKYMESVVEAIEREYSEDLITIDLNAALEQIGKI 404


>gi|312081419|ref|XP_003143020.1| hypothetical protein LOAG_07439 [Loa loa]
 gi|307761818|gb|EFO21052.1| hypothetical protein LOAG_07439 [Loa loa]
          Length = 451

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 161/451 (35%), Positives = 245/451 (54%), Gaps = 32/451 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFAVS+GALP+AIS+IR+SG    +  E +  +KK  PR+         DG ++D+G+ 
Sbjct: 16  TIFAVSSGALPAAISVIRVSGKESRRCLEQLTGRKKILPRQLFYANIR-RDGELIDRGMA 74

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           +  P P++ TGED AEF+VHG  AVV+ +L+ L +  N++LA  GEF++RAF NGK+ L 
Sbjct: 75  VFLPGPKTSTGEDVAEFYVHGSRAVVDCLLQALGQFDNVQLARAGEFTKRAFFNGKMTLQ 134

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           E +SLA L++++T+ QRRL++   +            +L  +R+ +EA +DF    D   
Sbjct: 135 EVQSLAYLLAAQTQRQRRLALRMNT--------LGKKQLIEVRASVEASIDFG---DDVW 183

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
           F  +++   I  + +++S+   Q   G +I  G +IVILG +N GKSSLFN +A +D+AI
Sbjct: 184 FQWEDIRVVISLMISELSNIQEQMHRGMLINEGLRIVILGQTNVGKSSLFNRMANRDMAI 243

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENADLILLL 305
           V+DI GTTRD L   + L    V I DTAGIRE   D +E EGI+RT      AD+ +++
Sbjct: 244 VSDIGGTTRDSLEATIQLSSIPVTIVDTAGIREILLDSLEAEGIRRTLRRAAEADIAIVV 303

Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEE----YDHLISSFTGEG 350
            + +  K+               K         K D+ +             IS  +GEG
Sbjct: 304 IDSSMCKDFETDVRSVLSWCHLKKETPVFVALNKCDICNVPNNIVLPWPAVNISCISGEG 363

Query: 351 LEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           +  L+  I   +S         ++ S + H   L +T+  L  A        + ++AE L
Sbjct: 364 ISSLLEIICEHISELCPVSDDSTLVSSQAHRLLLKETILVLRKALEVN---DVAVVAELL 420

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R  S  + +++G +  EQ+LD IFS FCIGK
Sbjct: 421 RDVSDYISEMSGTIVNEQILDQIFSSFCIGK 451


>gi|329565797|gb|AEB92235.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
          Length = 404

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 214/401 (53%), Gaps = 22/401 (5%)

Query: 39  KKKKPFPRKASLRYFFGLDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGI 95
            K     +  +L Y   +D     + D+ L+ +   P ++T ED  E + HGGI V + I
Sbjct: 6   PKNIKKVKSHTLHYGHIVDPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKI 65

Query: 96  LEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS 155
           LE + K    RLA PGEF++RAF NG+IDL +AE++ D+I+++T +  + + + +SG + 
Sbjct: 66  LELVLK-QGARLAEPGEFTKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIG 124

Query: 156 SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
               +  DK+  + + + A +DF E +DV+    KE+L     +  DI   I   + G +
Sbjct: 125 QKMKELKDKIMGLLAHLLALIDFPE-DDVEELERKEMLKTAKEIVEDIDKLIVSSESGRV 183

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR G K  I+G  N GKSSL NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTA
Sbjct: 184 IREGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTA 243

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKS 329
           GIR+TD++VEK G+ ++   +  ADLIL + + + +      +        + +F+  K 
Sbjct: 244 GIRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKNIVFVLNKI 303

Query: 330 DLYSTYTEE---------YDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRH 379
           DL     E+             +S+    GL+EL + I +++      +    I ++ RH
Sbjct: 304 DLPKKIDEKELKNLTKDGIIIEVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRH 363

Query: 380 LYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKI 419
              L    +Y+E +    E++   D+I  +L  A   +GKI
Sbjct: 364 KEALINAKKYMESVVEAIEREYSEDLITIDLNAALEQIGKI 404


>gi|309356576|emb|CAP36954.2| hypothetical protein CBG_19762 [Caenorhabditis briggsae AF16]
          Length = 448

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 147/457 (32%), Positives = 243/457 (53%), Gaps = 34/457 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+S+G LPSAI++ R+SGP    +   + ++K   P+       +    RI+D+ + 
Sbjct: 3   TIFALSSGTLPSAIAVFRVSGPQSLPILRQLSRRKVWTPKMMEFTKLYDSQRRIIDESMA 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP P++FTGED+AEF +HG  AV       L+++ N+R A  GEF+RRAF NGK+ + 
Sbjct: 63  VYFPGPKTFTGEDTAEFFLHGSQAVAQKFATCLSEIENVREAKRGEFTRRAFHNGKMSIS 122

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID-------KLTHIRSFIEADLDFS 179
           E   L  LI S TE +RR +   M G   ++  +W++       KL  I S +   +DF 
Sbjct: 123 EVRGLDRLIRSRTEKERRAAFGQMRGGTRAVEIRWLENFENFSKKLVEILSKLFVIIDFG 182

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   ++  ++++   D+  +  +I+  I   +  E  + G +IV+ G  N+GKSS+ N L
Sbjct: 183 EHVALELSAAQK---DVAEILAEINRLILAWEGAERAQRGLEIVLYGRPNSGKSSILNQL 239

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVEN 298
           A  DVAIV++IPGTTRD L   + + G   +++DTAGIR  T+D++E EGI+R    +E+
Sbjct: 240 AHDDVAIVSEIPGTTRDSLVTTIQINGIRCRLTDTAGIRPHTNDVIEAEGIRRAQRRLES 299

Query: 299 ADLILLLKEINSK--------KEISFPKNI--DFIFIGTKSDLYSTYTE---EYDHLISS 345
           AD+I  + +  S+        +++   KN     + +  K+DL   Y E      H++SS
Sbjct: 300 ADVICFVVDPESRSDDVANILEDVKKLKNPESKVLIVKNKADLKLPYPEVSSSGIHVVSS 359

Query: 346 F--TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
              + EG ++L   + S++     +  F +         L +    L  + L +      
Sbjct: 360 HATSSEGCQKLRETLGSLVDQLCPETNFLL-----DAELLRKCSDELTCSMLCQDAA--- 411

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           I+ +++      + ++T     E +LD IFS+FCIGK
Sbjct: 412 IMCQHIEKGLEHIAELTQGTVTESVLDGIFSQFCIGK 448


>gi|315608192|ref|ZP_07883184.1| tRNA modification GTPase TrmE [Prevotella buccae ATCC 33574]
 gi|315250161|gb|EFU30158.1| tRNA modification GTPase TrmE [Prevotella buccae ATCC 33574]
          Length = 512

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 130/506 (25%), Positives = 231/506 (45%), Gaps = 74/506 (14%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRY--FFGLDGRI 60
           TI A++T A   AI ++R+SG    ++ + I K    +K    +  +L Y      +   
Sbjct: 9   TICALATPAG-GAIGVVRVSGSEAIKIADHIFKAKSGRKLANAKGNTLHYGEIVNHNRET 67

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D  +  V+ +P S+TGED+ EF  HG   ++  +L  L +    R A PGE+++RA+ N
Sbjct: 68  IDDVMASVYRAPFSYTGEDAVEFSCHGSQYILQEVLHLLIQ-NGCRQAEPGEYTQRAYLN 126

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI+S      ++++  + G  S+      D+L  + S +E +LDFS+
Sbjct: 127 GKMDLSQAEAVADLIASTNRATHKMAISQLKGHFSNELILLRDRLLKMTSLLELELDFSD 186

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E+++    K++L     +   I+S I   + G  ++NG  + I+G +N GKS+L N L 
Sbjct: 187 HEELEFADRKQLLELACQIDEKITSLIQSFETGNALKNGIPVAIVGKTNVGKSTLLNRLL 246

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIV+DI GTTRD +     + G   +  DTAGIR+T+D VE+ GI RT+ +++ A 
Sbjct: 247 HEERAIVSDIHGTTRDTIEDTTLINGVAFRFIDTAGIRKTEDEVERIGIDRTYQKIDQAT 306

Query: 301 LILLLKE--INSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           +++ + +   ++ ++          + I +  K D+  T++  Y         E    + 
Sbjct: 307 VVVWMIDTSPSALEQEDMRSKCIGKNVILVHNKVDIALTHSPSYPQECLHGFQERSHCIK 366

Query: 356 NKIKS------------------------ILSNKFKKLP---FSIPSHKRHLYHLSQTVR 388
            K ++                        IL     +L      +    +  +++S    
Sbjct: 367 EKKEAPSYSKKTQLYSKERPDSDNASGSPILYPSPTQLEWIYDEVFISAKQGFNISNLEA 426

Query: 389 YLEMASLNEKDCGLDIIA-------------ENLRLASVSL-GKITGCVDVEQL------ 428
            +  AS        DII              +++     +L   ++G +  E+L      
Sbjct: 427 AIYKASNIPNISENDIIVTNARHYDALLHAKQDIIRVQDALHANLSGDLVSEELHICLDQ 486

Query: 429 --------------LDIIFSKFCIGK 440
                         L  IF  FCIGK
Sbjct: 487 LSEITGGQITPNEVLANIFKHFCIGK 512


>gi|329565793|gb|AEB92233.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
 gi|329565813|gb|AEB92243.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
          Length = 404

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 213/401 (53%), Gaps = 22/401 (5%)

Query: 39  KKKKPFPRKASLRYFFGLDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGI 95
            K     +  +L Y   +D     + D+ L+ +   P ++T ED  E + HGGI V + I
Sbjct: 6   PKNIKKVKSHTLHYGHIVDPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKI 65

Query: 96  LEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS 155
           LE + K    RLA PGEF++RAF NG+IDL +AE++ D+I+++T +  + + + +SG + 
Sbjct: 66  LELVLK-QGARLAEPGEFTKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIG 124

Query: 156 SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
               +  DK+  +   + A +DF E +DV+    KE+L     +  DI   I   + G +
Sbjct: 125 QKMKELKDKIMGLLVHLLALIDFPE-DDVEELERKEMLETAKEIVKDIDKLIVSSESGRV 183

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR G K  I+G  N GKSSL NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTA
Sbjct: 184 IREGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTA 243

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKS 329
           GIR+TD++VEK G+ ++   +  ADLIL + + + +      +        + +F+  K 
Sbjct: 244 GIRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKNIVFVLNKI 303

Query: 330 DLYSTYTEE---------YDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRH 379
           DL     E+             +S+    GL+EL + I +++      +    I ++ RH
Sbjct: 304 DLPKKIDEKELKNLTKDGIIIEVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRH 363

Query: 380 LYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKI 419
              L    +Y+E +    E++   D+I  +L  A   +GKI
Sbjct: 364 KEALINAKKYMESVVEAIEREYSEDLITIDLNAALEQIGKI 404


>gi|296125427|ref|YP_003632679.1| tRNA modification GTPase TrmE [Brachyspira murdochii DSM 12563]
 gi|296017243|gb|ADG70480.1| tRNA modification GTPase TrmE [Brachyspira murdochii DSM 12563]
          Length = 464

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 140/460 (30%), Positives = 243/460 (52%), Gaps = 26/460 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--------KKKKPFPRKASLRYFFGL 56
           K+TI A+ST    SA+++IR+SG    ++   IC           K   RK+        
Sbjct: 7   KDTIAALSTPYSKSALALIRMSGSKALEIASKICFYAGDENKNITKFEHRKSYYALVKDE 66

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +   +D+ +++   +P +FT ED+ EF  HG I V++ +L  L +    R AN GEF+ R
Sbjct: 67  NNTPIDELIVLSTLAPNTFTSEDTIEFISHGSIVVIDSLLNLLIR-NGARAANRGEFTYR 125

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           A+ NG+I + EAE++ DLI S   +    S+  M G L+    +  D + +    +  +L
Sbjct: 126 AYINGRIGISEAEAIHDLIDSNNRLMAEASIYKMRGRLTREIDKLRDNIKNSLILVYGEL 185

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF E +D + FS  +++ + + +K DI + +      E + NG KI ILG  NAGKSS+F
Sbjct: 186 DFPE-DDTETFSYDKLIENFINIKKDIENILYNSNRVENLINGIKIAILGRVNAGKSSIF 244

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLE 295
           N +  K+ AIV++I GTTRD L+ ++ ++     + DTAG  +E D+ +E EGI+R    
Sbjct: 245 NMILDKNRAIVSNIAGTTRDFLSENIYIDNIPFYLMDTAGFHKEADNDIELEGIERAKKC 304

Query: 296 VENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYD----HL 342
              A++IL + + +   +         ++  K+ + I+I  KSD    +    D      
Sbjct: 305 AYEANIILAVFDSSRNADENDINLIEFLTTLKDKNIIYILNKSDEEKKFDYNIDSNNIIT 364

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNEK-DC 400
           IS+ T EG ++LI ++K+ +++    +       + R   +L + ++ L++     K   
Sbjct: 365 ISTKTKEGKDKLIKELKNYVNDSDIDIFNKESYVNNRERGYLEKGLKQLDICIEKSKMSF 424

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD +AE + + +  LG ++G +D E++++ IF+ FCIGK
Sbjct: 425 SLDEVAEEMNILNNILGNVSGKIDAEEVINEIFANFCIGK 464


>gi|329565799|gb|AEB92236.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
 gi|329565803|gb|AEB92238.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
 gi|329565805|gb|AEB92239.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
          Length = 404

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 213/401 (53%), Gaps = 22/401 (5%)

Query: 39  KKKKPFPRKASLRYFFGLDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGI 95
            K     +  +L Y   +D     + D+ L+ +   P ++T ED  E + HGGI V + I
Sbjct: 6   PKNIKKVKSHTLHYGHIVDPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKI 65

Query: 96  LEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS 155
           LE + K    RLA PGEF++RAF NG+IDL +AE++ D+I+++T +  + + + +SG + 
Sbjct: 66  LELVLK-QGARLAEPGEFTKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIG 124

Query: 156 SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
               +  DK+  +   + A +DF E +DV+    KE+L     +  DI   I   + G +
Sbjct: 125 QKMKELKDKIMGLLVHLLALIDFPE-DDVEELERKEMLETAKEIVEDIDKLIVSSESGRV 183

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR G K  I+G  N GKSSL NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTA
Sbjct: 184 IREGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTA 243

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKS 329
           GIR+TD++VEK G+ ++   +  ADLIL + + + +      +        + +F+  K 
Sbjct: 244 GIRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKNIVFVLNKI 303

Query: 330 DLYSTYTEE---------YDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRH 379
           DL     E+             +S+    GL+EL + I +++      +    I ++ RH
Sbjct: 304 DLPKKIDEKELKNLTKDGIIIEVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRH 363

Query: 380 LYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKI 419
              L    +Y+E +    E++   D+I  +L  A   +GKI
Sbjct: 364 KEALINAKKYMESVVEAIEREYSEDLITIDLNAALEQIGKI 404


>gi|329565795|gb|AEB92234.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
          Length = 404

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 212/401 (52%), Gaps = 22/401 (5%)

Query: 39  KKKKPFPRKASLRYFFGLDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGI 95
            K     +  +L Y   +D     + D+ L+ +   P ++T ED  E + HGGI V + I
Sbjct: 6   PKNIKKVKSHTLHYGHIVDPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKI 65

Query: 96  LEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS 155
           LE + K    RLA PGEF++RAF NG+IDL +AE++ D+I+++T +  + + + +SG + 
Sbjct: 66  LELVLK-QGARLAEPGEFTKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIG 124

Query: 156 SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
               +  DK+  +   + A +DF E +DV+    KE+L     +  DI   I   + G +
Sbjct: 125 QKMKELKDKIMGLLVHLLALIDFPE-DDVEELERKEMLETAKEIVKDIDKLIVSSESGRV 183

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR G K  I+G  N GKSSL NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTA
Sbjct: 184 IREGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTA 243

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKS 329
           GIR+TD++VEK G+ ++   +  ADLIL + + + +      +        + +F+  K 
Sbjct: 244 GIRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKNIVFVLNKI 303

Query: 330 DLYSTYTEE---------YDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRH 379
           DL     E+             +S     GL+EL + I +++      +    I ++ RH
Sbjct: 304 DLPKKIDEKELKNLTKDGIIIEVSPVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRH 363

Query: 380 LYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKI 419
              L    +Y+E +    E++   D+I  +L  A   +GKI
Sbjct: 364 KEALINAKKYMESVVEAIEREYSEDLITIDLNAALEQIGKI 404


>gi|307103609|gb|EFN51868.1| hypothetical protein CHLNCDRAFT_8246 [Chlorella variabilis]
          Length = 469

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 151/487 (31%), Positives = 254/487 (52%), Gaps = 71/487 (14%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLDGRILDKGL 65
           TI+A+S+     A+++IR+SGP+     + +  + + P  RKA+L      +G +LD+GL
Sbjct: 1   TIYALSSAPGRGALAVIRISGPASDMALKHLMMRDELPPARKATLTSLTAPNGELLDRGL 60

Query: 66  LIVFPSPESFTG-EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ F +P SFTG ED AE H+HG  AVV+ + + L +   LR A  GEF+RRAF+ GK+D
Sbjct: 61  VLRFQAPLSFTGGEDCAELHLHGSPAVVHAVQDAL-RELRLRPAEAGEFARRAFDAGKLD 119

Query: 125 LLEA-------------------ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           L +A                   E LADL++++TE QRR ++   +  L+  +      L
Sbjct: 120 LTQARAQPHHAHLHAHHSAWLDVEGLADLLAADTESQRRQALLHSTAHLTVAF-----PL 174

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
             + + +EA +DF E+E +    +  VL  +  L+  +  H++    GE++R G +I I+
Sbjct: 175 PSVAARLEAVIDFGEDEGIAEDVAAGVLPLVCDLRQQLEGHLASAASGELVRTGVRIAIV 234

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  NAGKSSL N LA ++ AIV+  PGTTRDV+ + L+L G  V + D+AG+R+TD  +E
Sbjct: 235 GPPNAGKSSLLNLLAGQEAAIVSPAPGTTRDVVQVQLELGGVKVILIDSAGLRQTDCPIE 294

Query: 286 KEGIKRTFLEVENADLILLLKEINSKK--------------EISFPKNIDFIFIGTKSDL 331
            EG++R       A ++L L +  S                 +  P  I  +++  K+DL
Sbjct: 295 AEGVRRAVAAAHQAHIVLHLADATSGAAADGVDSRGQLADVALPLPAQIVQLWVMNKADL 354

Query: 332 Y--------STYTEEYDHLISSFTGEGLEELINKIKS-----ILSNKFKKLPFSIPSHKR 378
                    +T       L+S  +G+G+++L+  ++      + S     +  ++ +  R
Sbjct: 355 VPGCHEAAGATVPPAPHLLVSCKSGQGIDQLLALLQQHVRALVASGGDGGMAGALVTRAR 414

Query: 379 HLY-----HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
           H        +   +++LE+              E +R A+ +LG++TG +D   +LD +F
Sbjct: 415 HKRTSVPPDILVALQHLEVQC------------EEVRAAARALGRVTGAIDTAMVLDSLF 462

Query: 434 SKFCIGK 440
            +FCIGK
Sbjct: 463 CEFCIGK 469


>gi|17507259|ref|NP_493573.1| hypothetical protein F39B2.7 [Caenorhabditis elegans]
 gi|3876919|emb|CAB07393.1| C. elegans protein F39B2.7, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 439

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 233/450 (51%), Gaps = 29/450 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIFA+S+G LPSAI++ R+SG     V   + ++K   P+       +  + +I+D+ + 
Sbjct: 3   TIFALSSGTLPSAIAMFRVSGSQSLPVLRQLSRRKVWKPKTMKYTKLYDSESKIIDEAMA 62

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           +  P P++FTGED+AEF +HG  AV       LA + N+R A  GEF+RRAF NGK+ + 
Sbjct: 63  VYLPGPKTFTGEDTAEFFLHGSQAVAVKFASCLAGIQNVREAKRGEFTRRAFHNGKLSIS 122

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           E   +  LI S TE +R  +   M G + ++  +   +L  I S +   +DF E  +++ 
Sbjct: 123 EVRGIDRLIKSRTEKERNAAFGQMRGGVRAI--EIRKQLIQILSKLFVIIDFGEHVNLE- 179

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              +E   D+  + ++++  I      E  + G  IV+ G  N+GKSS+ N LA  DVAI
Sbjct: 180 --LREAQQDVSEILHELNRMIKAWDGAERAQRGLDIVLYGRPNSGKSSILNQLAHDDVAI 237

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLL 305
           V+ IPGTTRD L   + + G   +++DTAG+R +T+D++E EGI+R    +++AD+I ++
Sbjct: 238 VSSIPGTTRDSLETIIQINGVRCRLTDTAGVRQKTNDVIEAEGIRRAQKRIQSADIICVV 297

Query: 306 KEIN-----------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS----SFTGEG 350
            +             +  E+   +    I    KSDL   Y +   +  +    + T  G
Sbjct: 298 VDPQFTSDDDVESILNDVEVMRNREARVIIAKNKSDLSLKYPKLPSNFTTVSTNATTDTG 357

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
            ++L N +  I+ +   +  + +         L +    LE A          I+  +L 
Sbjct: 358 CKQLQNCLGEIVDDLCPEASYLL-----DADLLRRCSFELESAVTCNDAA---IMCSHLE 409

Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A   +G++T  +  E +LD IFSKFCIGK
Sbjct: 410 VALEQIGELTEGIVTESVLDGIFSKFCIGK 439


>gi|261415134|ref|YP_003248817.1| tRNA modification GTPase TrmE [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371590|gb|ACX74335.1| tRNA modification GTPase TrmE [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326526|gb|ADL25727.1| tRNA modification GTPase TrmE [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 460

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 143/461 (31%), Positives = 237/461 (51%), Gaps = 26/461 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK---KKPFPRKAS------LRYFF 54
           + +TI A  T A  SA++ IR+SG    +V   +  +   K   PR+A        R   
Sbjct: 2   DSQTIVAPMTPAGVSAVAAIRVSGSKVREVVRLLFGESAIKNLKPREAKLATARDYRTMV 61

Query: 55  GLDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
           G D     ++D  L I F  P S+TGED  E + HG   +V  +++ +  +  +RLA PG
Sbjct: 62  GEDRATALVIDSLLYIFFEGPNSYTGEDVLELYPHGNPIIVRELIQVIKSVDGVRLAEPG 121

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           E++RRAF NG++DL++AES+AD+I S    + + +   + G LS       + +  I + 
Sbjct: 122 EYTRRAFLNGRMDLVQAESVADVIHSANRDELKNAHRLLGGALSKKVKTLTELVMDISAR 181

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           +E D+DFSEEE   ++++      I  ++  + S +   K    +      V+ G  NAG
Sbjct: 182 LELDVDFSEEEADPDYAT--WGVKISAIRESVESILKSFKGKAAVSRLPLAVLYGAPNAG 239

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIK 290
           KSSL NAL  +D  +V++IPGTTRD + + L L+G  +++ DTAGI  +  D ++   ++
Sbjct: 240 KSSLVNALLGEDRILVSNIPGTTRDFVEVRLFLDGGEIRLVDTAGIADKATDALDALSME 299

Query: 291 RTFLEVENADLILLLKE--INSKKEISFPKN---IDFIFIGTKSDLYSTYTEEYD----- 340
           ++   +  AD+ +L+ +  ++       P+N      I + +KSDL     E  D     
Sbjct: 300 KSKEILAEADMKILVVDGSLDENCASCHPENGAAQPDIVVISKSDLLDERRETRDERGES 359

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399
             ISS TGEGL EL   + + L  K +       + +R    L + +  ++ A +L   +
Sbjct: 360 IRISSKTGEGLAELKRAMNAALFKKMENSEDLWITSEREKTCLEEALAGIDRALNLIRTN 419

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             ++++A  ++L   SL  ITG +  E +L  IF+ FCIGK
Sbjct: 420 PAVELLAFEMQLVRRSLQSITGEISSEDVLQQIFAGFCIGK 460


>gi|171693857|ref|XP_001911853.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946877|emb|CAP73681.1| unnamed protein product [Podospora anserina S mat+]
          Length = 520

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 159/518 (30%), Positives = 247/518 (47%), Gaps = 85/518 (16%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL---- 56
           N   +TI+A+S+GA  + I++IR+SGP    V + +C  K  P PR A +R         
Sbjct: 4   NENDDTIYALSSGAGKAGIAVIRISGPGSLSVYKALCPTKPPPKPRYAGVRTLLDPASAN 63

Query: 57  --DGRILD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANP 110
             +G ILD   L++ FP P++ TGED  E HVHGG A +  +L  + K      +R A P
Sbjct: 64  LPNGNILDSDSLILYFPGPKTVTGEDVLELHVHGGSATIKAVLAAIPKCSTTGKVRYAEP 123

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           GEF+RRAF NG++DL + ESL D + + TE QRR++++G SG L   Y +W ++L   R 
Sbjct: 124 GEFTRRAFLNGRLDLAQVESLGDTLDAVTEQQRRVAVQGNSGVLGKTYERWREELLLARG 183

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDI---LFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
            IEA +DFSE++      ++ + N       + + I+ H    +  E++RNG +I +LG 
Sbjct: 184 EIEALIDFSEDQHFDESPTELLTNVRRLVEGILHSINMHKLGSQKSELLRNGIRIALLGP 243

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD------ 281
            NAGKSSL N +  ++ +IV+   GTTRDV+  +LD+ GYL   +DTAGIR         
Sbjct: 244 PNAGKSSLMNQIVGREASIVSSEAGTTRDVIEANLDIRGYLCSFADTAGIRTESTRSIAN 303

Query: 282 ---------DIVEKEGIKRTFLEVENADLILLLKEINSKKE-----------ISFPKNID 321
                      +E+EGI+R   +  ++D++++L  + + K            +       
Sbjct: 304 LDGDSSPVIGAIEQEGIRRARQKAMDSDIVIVLASVEAVKGGGHQISYDVETLKLAAAAQ 363

Query: 322 FIFIG-TKSDLYSTYTEE--YDHLISSFTGE----------------------------G 350
              +   KSD+    T E       SS  G                             G
Sbjct: 364 QCLVAVNKSDVVERETLEPLIQGFKSSALGSVQGLQGAEPLTISCKAAATAAAGLTDPGG 423

Query: 351 LEELINKIKSILSNKFKKLPFSIPS----HKRHLYHLSQTVRYLEMASLNEKDCG----- 401
           +  L  ++     ++   LP  +       +R    L +   +LE      + CG     
Sbjct: 424 VHTLTERLVQSF-SELTSLPGDVHHLLGVTERQNQLLFECQMHLEGFMTEAQACGAGREP 482

Query: 402 -LDIIAENLRLASVSLGKITGCVDV---EQLLDIIFSK 435
            + + AE+LRLA+  L  ITG  D    E++L +IF K
Sbjct: 483 DVVLAAEHLRLAANRLACITGRGDSGDVEEVLGVIFEK 520


>gi|91202839|emb|CAJ72478.1| similar to universal bacterial GTPase ThdF/TrmE [Candidatus
           Kuenenia stuttgartiensis]
          Length = 468

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 134/465 (28%), Positives = 234/465 (50%), Gaps = 31/465 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL--- 61
           ++TI  V+T A  S  ++IR+SG         I        +  +L+ F  + G I    
Sbjct: 6   QDTILTVATPAGRSFHAVIRVSGSEAIPSIHEIFVPSANI-KLENLQTFVSIKGCICLPA 64

Query: 62  ----DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-----NLRLANPGE 112
                  +L V   P S+T ED  E H  GG  +   IL+ + +        LRL+ PGE
Sbjct: 65  ESLKIPAVLYVMRQPHSYTKEDIVEIHTLGGRPIGEMILQYILQKKEGLKDGLRLSRPGE 124

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F++RAF +G+IDL +AE++ +LI S+++ +  L++  +SG  S       +K+T + ++I
Sbjct: 125 FTKRAFLHGRIDLAQAEAIKNLIRSQSDSELDLAILQLSGNASLRIKDIQNKITSLCTYI 184

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E  +DFS+ +D++  S  E++N +  ++NDI + +++    +I     + V+ G  N GK
Sbjct: 185 EMSIDFSD-QDIELISRMEMINKMEDIRNDIVNLMNKPLTDKISSEEIRTVLYGKPNVGK 243

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NAL  +  AIV+D PGTTRD++T  L++     K++D AG  E  + V  +  ++ 
Sbjct: 244 SSLINALLGEKRAIVSDRPGTTRDMVTGVLEIGSVCFKLTDIAGFDEAREPVFLQAREKA 303

Query: 293 FLEVENADLILLLKEINSKKEISFPK---------------NIDFIFIGTKSDLYSTYTE 337
              +++A L+LL+   N K +I   +                 D +   +  +L     +
Sbjct: 304 QGALKSAHLLLLVFAGNEKMDIQSLEINHSEVANNVIVVVNKCDLMPESSSFELPEEVKK 363

Query: 338 EYDHLISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                +S+ TGEGLE L   +   +L+ + ++       +      + ++   +E A  +
Sbjct: 364 YTVVYVSALTGEGLERLKTLMFDKVLAGQIERSNTLHFFNVYQKDAMQRSYERIEQAIAS 423

Query: 397 EKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D    + IA +LR+A   LG++ G +  E +LD IF +FCIGK
Sbjct: 424 FRDTMSDEFIAMDLRMAVDILGEVVGEITTEDILDKIFQEFCIGK 468


>gi|70984128|ref|XP_747583.1| mitochondrial GTPase (Mss1) [Aspergillus fumigatus Af293]
 gi|66845210|gb|EAL85545.1| mitochondrial GTPase (Mss1), putative [Aspergillus fumigatus Af293]
 gi|159122369|gb|EDP47490.1| mitochondrial GTPase (Mss1), putative [Aspergillus fumigatus A1163]
          Length = 604

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 154/539 (28%), Positives = 246/539 (45%), Gaps = 110/539 (20%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR-----I 60
           TI+A+ST    +AI+++R+SG +C Q+   +C     P  R A++R  +          +
Sbjct: 66  TIYALSTAPGRAAIAVVRVSGSACVQIYRALCPSAPLPRARVAAVRTLYDPTQEPSANTV 125

Query: 61  LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSR 115
           LD G L++ FP P++ TGED  E H+HGG A+V  +L  +A+       +R A PGEF+R
Sbjct: 126 LDAGALVLYFPGPKTVTGEDVLELHLHGGPAIVKSVLAAIARSNRPESTVRYAEPGEFTR 185

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N ++DL + E+L D ++++TE QRRL++ G S  LS  Y  W  +L + R  +EA 
Sbjct: 186 RAFMNNRLDLPQIEALGDTLTADTEQQRRLAVRGASDALSRRYESWRQQLLYARGELEAL 245

Query: 176 LDFSEE---EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           +DFSE+   ++      + V   +  L+  +  HI     GE++RNG KI +LG  NAGK
Sbjct: 246 IDFSEDQYFDESPEDFVRSVAGQVRALQTQLRLHIENASKGELLRNGIKIALLGAPNAGK 305

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD----------- 281
           SSL N +  K+ AIV+   GTTRD++ + +DL G+  K+ D AGIR              
Sbjct: 306 SSLLNRIVGKEAAIVSTEEGTTRDIVDVGVDLGGWYCKLGDMAGIRSEKSTSTGQGTAII 365

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN------------SKKEISFPKNI-----DFIF 324
             VEKEGI+R       +D+++L+  +              ++ I    +        + 
Sbjct: 366 GAVEKEGIRRARARALESDVVVLVISLEEGTNGSPYRLSVDQEVIDAVNDCVQAGKCIVV 425

Query: 325 IGTKSD---------------------LYSTYTEE--YDHLISSFTGEGLEE-------- 353
              K D                     L+    E+  +D   +  + E L E        
Sbjct: 426 AINKCDRLPAADRFGQSLHDLRTKIRTLFPAVPEKRIFDISCNEASEETLSEQSDPGNLQ 485

Query: 354 -----LINKIKSIL-----------SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396
                LI+  + I                     S+    R   +L + +++L+      
Sbjct: 486 RFLRGLISTFEEIASPARMDGDENGQYDLSYWEDSLGVTHRQSSNLQRCMQHLDDFLNET 545

Query: 397 -----------------EKDCGLDIIAENLRLASVSLGKITGC---VDVEQLLDIIFSK 435
                            E +  + + AE+LR A+ +L KITG     DVE +L ++F K
Sbjct: 546 TQAQTLQTPGYADDRNIETEIDVVMAAEHLRFAADTLAKITGKGESGDVEDVLGVVFEK 604


>gi|1902827|dbj|BAA19450.1| ORF4 [Leptospira interrogans]
 gi|2780770|dbj|BAA24373.1| ORF4; putative [Leptospira interrogans]
          Length = 435

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 147/439 (33%), Positives = 228/439 (51%), Gaps = 27/439 (6%)

Query: 25  LSGPSCFQVCE-FICKKKK------PFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
           +SGP    +   F+  K K        PR A    F   D R +D+ L   F SP S+TG
Sbjct: 1   MSGPEALTISSSFLFSKNKFLSPSEILPRTAIQCVFQIGD-RKIDQILFFYFKSPNSYTG 59

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  EFH HG   ++   L+ + +    R A  GEFSRRAF N K+DL E E++  LIS+
Sbjct: 60  EDLCEFHFHGNPILLREALDAIFRA-GARPAKQGEFSRRAFLNEKLDLTEVEAIGRLISA 118

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +  +  L+ + + GE++        +L  +++  EA++DFS  ED+   S +E    I 
Sbjct: 119 RSRFELELAQKNVFGEVTRFTSNLRSQLISLKAECEAEIDFS-TEDLTYESLEERKTRIE 177

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +K+   + IS+    E +   ++IV+ G  N GKSSL N L  K+ +I+++IPGTTRD 
Sbjct: 178 NVKSLCQTLISKSSSAEKLIQQFRIVLYGEPNTGKSSLMNVLLGKERSIISEIPGTTRDY 237

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI--- 314
           ++ ++ LEG  V++ DTAG+RET D +EK GI+R+  E ++AD+ L L +++ K+     
Sbjct: 238 ISEEIFLEGIPVRLVDTAGVRETTDHIEKLGIERSEKEFQSADVRLFLVDVSKKENWKEF 297

Query: 315 ---SFPKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
              S  +    I I  K D         L+S   +     IS  T EG+  L++ IK   
Sbjct: 298 INKSRERLEGSILIANKIDILNSSWDRNLFSDVKDLIVLEISCKTKEGISNLLDAIKER- 356

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEM-ASLNEKDCGLDIIAENLRLASVSLGKITG 421
           + K       +   +R  YH    VR L+    L ++    +I  + +  A   +G++ G
Sbjct: 357 TGKLGHSEDYVLLEERQRYHFETIVRCLDKTLHLLKEGAPAEIYIQEINYALAEIGEVNG 416

Query: 422 CVDVEQLLDIIFSKFCIGK 440
            VD E++L  IFSKFC+GK
Sbjct: 417 KVDTEEVLGRIFSKFCVGK 435


>gi|194476819|ref|YP_002048998.1| tRNA modification GTPase [Paulinella chromatophora]
 gi|171191826|gb|ACB42788.1| tRNA modification GTPase [Paulinella chromatophora]
          Length = 406

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 124/402 (30%), Positives = 210/402 (52%), Gaps = 20/402 (4%)

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            ++G  +D+ LL++  +P SFT ED  EF  HGG+  V  +LE L      R A PGEF+
Sbjct: 9   PINGERIDEALLLIMKAPRSFTAEDVIEFQCHGGLVCVQRVLE-LVISEGARRALPGEFT 67

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RA  +G++D+  AE++++LI + +    +L+M G+ G +      + ++L    + IEA
Sbjct: 68  QRAVLHGRLDITRAEAISELIGARSRRASQLAMVGLGGGVQKSILGFRERLLDQLAEIEA 127

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +DF E   +       +  ++  +  ++   +  G+   I++ G +I ++G  N GKSS
Sbjct: 128 RVDFEEN--ILPVDECAIKREVQSIVQELIQLVVDGRCSAIVQRGLRIALVGRPNVGKSS 185

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N L++++ AIVTDIPGTTRD++  ++ L G  + + DTAGI+ T+D VEK GI+R+  
Sbjct: 186 LLNRLSRRERAIVTDIPGTTRDLIETEIILNGVPITLLDTAGIQVTEDKVEKVGIERSRE 245

Query: 295 EVENADLILLLKE-------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------ 341
            + +AD I+L+ +        ++      P ++  + +G K+D YS  +           
Sbjct: 246 AIASADAIVLVFDLVEGWTLADAILLKEIPSDVTLLIVGNKADRYSNKSHSPIQLSDPLW 305

Query: 342 --LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398
              +S+ TGEG   ++ ++ +      +    ++  + R     S     LE      E 
Sbjct: 306 AMPVSAMTGEGEASMLTELLNR-CGAGEIQEINLALNARQCDLASSAASILEQGLQTFED 364

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +D    +LR A   LG+ITG    E  LD IFS+FCIGK
Sbjct: 365 GLPIDFFTIDLRQAIKFLGQITGDDISESTLDRIFSRFCIGK 406


>gi|329565815|gb|AEB92244.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus]
          Length = 404

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 129/401 (32%), Positives = 212/401 (52%), Gaps = 22/401 (5%)

Query: 39  KKKKPFPRKASLRYFFGLDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGI 95
            K     +  +L Y   +D     + D+ L+ +   P ++T ED  E + HGGI V + I
Sbjct: 6   PKNIKKGKSHTLHYGHIVDPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKI 65

Query: 96  LEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS 155
           LE + K    RLA PGEF++RAF NG+IDL +AE++ D+I+++T +  +   + +SG + 
Sbjct: 66  LELVLK-QGARLAEPGEFTKRAFLNGRIDLSQAEAVIDIITAKTMLANKYPQKQLSGHIG 124

Query: 156 SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
               +  DK+  + + + A +DF E +DV+    KE+L     +  DI   I   + G +
Sbjct: 125 QKMKELKDKIMGLLAHLLALIDFPE-DDVEELERKEMLETAKEIVEDIDKLIVSSESGRV 183

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR G K  I+G  N GKSSL NAL K++ AIVTDIPGTTRD++   ++++G  +K+ DTA
Sbjct: 184 IREGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTA 243

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKS 329
           GIR+TD++VEK G+ ++   +  ADLIL + + + +      +        + +F+  K 
Sbjct: 244 GIRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKNIVFVLNKI 303

Query: 330 DLYSTYTEE---------YDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRH 379
           DL     E+             +S     GL+EL + I +++      +    I ++ RH
Sbjct: 304 DLPKKIDEKELKNLTKDGIIIEVSPVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRH 363

Query: 380 LYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKI 419
              L    +Y+E +    E++   D+I  +L  A   +GKI
Sbjct: 364 KEALINAKKYMESVVEAIEREYSEDLITIDLNAALEQIGKI 404


>gi|332187013|ref|ZP_08388754.1| small GTP-binding domain protein [Sphingomonas sp. S17]
 gi|332013023|gb|EGI55087.1| small GTP-binding domain protein [Sphingomonas sp. S17]
          Length = 428

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 145/441 (32%), Positives = 235/441 (53%), Gaps = 21/441 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFAVS+G  P+AI++IR+SGP  F   E +  +  P PR+A LR      G  LD  L
Sbjct: 3   DTIFAVSSGQPPAAIAVIRVSGPQAFAATERLAGR-LPKPRRAGLRRLRDAAGETLDSAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P + TGED  E H HGG AVV  +   LA  P +R A PGEF+RRA  +G+IDL
Sbjct: 62  VLSFPGPATATGEDLVELHCHGGRAVVAAVEGALAAQPGVRHAEPGEFTRRALTHGRIDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE LADL+ ++TE QRR ++  + G++S     W+D+   + + IEA LDF+EE+DV 
Sbjct: 122 AEAEGLADLLEAQTERQRRAAIGAVEGQVSQALRGWMDRTATLSAAIEAMLDFAEEDDVP 181

Query: 186 NFSSKE--VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
             ++    +  ++  L   +   + +  + + + +G ++V+ G  N+GKS+L N L +++
Sbjct: 182 LDAAALAGIRGEMDGLAQAMLEVVDRPPV-DRLHDGIRVVLAGPPNSGKSTLLNLLTERE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302
            AIV+ I GTTRD +   +   G    ++DTAG+ E TDD++E  GI R    ++ AD++
Sbjct: 241 AAIVSPIAGTTRDRIEASVLRGGIAYVLTDTAGLAEDTDDVIEAIGITRAQEAIDQADIL 300

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           L L +    +E +        ++ +++D+           ++    +G         + L
Sbjct: 301 LWLADTPPPREDAL-------WLHSRADVPGREGLPAGRQLAVRRDDG------ASIAAL 347

Query: 363 SNKFKKLPFSIPSHKRHL---YHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
            +   +   S+   +  +    H     R    A L        ++AE LR+A  +L  +
Sbjct: 348 WHAVAERAASLLPREDAVGFKRHQQDQCRLAAQALLAAPKADALLMAEELRVARQALAGL 407

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
            G    E +LD +F +FC+GK
Sbjct: 408 LGVSATETMLDALFGRFCLGK 428


>gi|12044858|ref|NP_072668.1| tRNA modification GTPase TrmE [Mycoplasma genitalium G37]
 gi|1351237|sp|P47254|MNME_MYCGE RecName: Full=tRNA modification GTPase mnmE
 gi|1045676|gb|AAC71224.1| tRNA modification GTPase TrmE [Mycoplasma genitalium G37]
 gi|166078782|gb|ABY79400.1| tRNA modification GTPase TrmE [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 442

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 133/442 (30%), Positives = 222/442 (50%), Gaps = 15/442 (3%)

Query: 8   IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLDGRILDKGLL 66
           IFA++T    SA+ IIR SGP  +++   I  KK      +    +    + + +D  LL
Sbjct: 7   IFALATAPFNSALHIIRFSGPDVYEILNKITNKKITRKGMQIQRTWIVDENNKRIDDVLL 66

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
             F SP S+TGED  E   HG + +VN I   L K   +  A PGEF++R+F NGK+ L 
Sbjct: 67  FKFVSPNSYTGEDLIEISCHGNMLIVNEICALLLKKGGV-YAKPGEFTQRSFLNGKMSLQ 125

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +A ++  LI S   + + + +  ++GE+     Q   ++  +   +E ++D+ E  D + 
Sbjct: 126 QASAVNKLILSPNLLVKDIVLNNLAGEMDQQLEQIAQQVNQLVMQMEVNIDYPEYLD-EQ 184

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                + N +  +   +   I   K  + + + +KI I+G +N GKSSL NAL  +D AI
Sbjct: 185 VELSTLNNKVKLIIEKLKRIIENSKQLKKLHDPFKIAIIGETNVGKSSLLNALLNQDKAI 244

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           V++I G+TRDV+  D +L GYL+KI DTAGIR+    +EK GIK++F  ++ A+L++ L 
Sbjct: 245 VSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKHKSGLEKAGIKKSFESIKQANLVIYLL 304

Query: 307 EINS-KKEISFPK-----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           +    KK++           DF     K DL +   E       S   + ++EL++ +  
Sbjct: 305 DATHPKKDLELISFFKKNKKDFFVFYNKKDLITNKFE----NSISAKQKDIKELVDLLTK 360

Query: 361 ILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDIIAENLRLASVSLGK 418
            ++  +KK+              + +    LE     + K    D++  +LR A   + K
Sbjct: 361 YINEFYKKIDQKIYLIENWQQILIEKIKEQLEQFLKQQKKYLFFDVLVTHLREAQQDILK 420

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           + G      L++ IF+ FC+GK
Sbjct: 421 LLGKDVGFDLVNEIFNNFCLGK 442


>gi|238494022|ref|XP_002378247.1| mitochondrial GTPase (Mss1), putative [Aspergillus flavus NRRL3357]
 gi|220694897|gb|EED51240.1| mitochondrial GTPase (Mss1), putative [Aspergillus flavus NRRL3357]
          Length = 621

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 156/540 (28%), Positives = 253/540 (46%), Gaps = 111/540 (20%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGRI----- 60
           TI+A+ST +  +AI+++R+SGP C ++ + +C K   P PR A++R  F           
Sbjct: 65  TIYALSTASGRAAIAVVRVSGPGCVRIYQALCPKAALPRPRFAAVRTLFDPTREPSSSSA 124

Query: 61  LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSR 115
           LD G L++ FP+P + TGED  E H+HGG A+V  +L  ++++      +R A PGEF+R
Sbjct: 125 LDAGALVLYFPAPNTVTGEDVLELHLHGGPAIVKSVLTAISRVSQPDSLVRYAEPGEFTR 184

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N ++DL + E+L D +S++TE QRRL++ G S  LS  Y QW  +L + R  +EA 
Sbjct: 185 RAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSRRYEQWRQQLLYARGELEAL 244

Query: 176 LDFSEEEDVQNFSSKEVL---NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           +DF+E++     S + VL     +  L+  +  HI     GE++R+G KI +LG  NAGK
Sbjct: 245 IDFAEDQHFDESSDELVLSVAAQVQALRVQVGFHIQNASKGELLRHGIKIALLGAPNAGK 304

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---------DI 283
           SSL N +  K+ AIV+   GTTRD++ + +DL G+  K+ D AGIR              
Sbjct: 305 SSLLNQIVGKEAAIVSTEEGTTRDIVDVGVDLSGWYCKLGDMAGIRSEPVNGKESVVIGA 364

Query: 284 VEKEGIKRTFLEVENADLILLLK------------EINSKKEI------SFPKNIDFIFI 325
           VEKEGI+R       +D+++++             +++ ++E+          +   +  
Sbjct: 365 VEKEGIRRAKARALESDVVIVVLSLERGAFDDIPYQLSIEQEVVEAVNDCLAADKCIVIA 424

Query: 326 GTK----------------------SDLYSTYTEEYDHLISSFTGEGLEELIN----KIK 359
             K                      SDL+ T  ++    IS    +    L       ++
Sbjct: 425 INKCDRLPLDVHNSQFLPEQLLASVSDLFPTVPQKRIFGISCREAQLESALERKDPGHLQ 484

Query: 360 SILSNKFKKL----------------------PFSIPSHKRHLYHLSQTVRYLEMASLNE 397
             L                               S+    R   +L + +++L+      
Sbjct: 485 EFLRGLISTFEEIASPSGIEGDANGDYNLSYWEDSLGVTHRQSSNLQRCLQHLDDFLAQT 544

Query: 398 K-----------------DCGLDII--AENLRLASVSLGKITGC---VDVEQLLDIIFSK 435
                             +  +DI+  AE+LR A+ +L KITG     DVE +L ++F K
Sbjct: 545 SRKHAPSMLGHEHEQQPIEMEIDIVTAAEHLRFAADALAKITGKGESGDVEDVLGVVFEK 604


>gi|326476482|gb|EGE00492.1| mitochondrial GTPase [Trichophyton tonsurans CBS 112818]
          Length = 594

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 155/549 (28%), Positives = 242/549 (44%), Gaps = 120/549 (21%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLD-----GRI 60
           TI+A+ST    +AI+IIR+SGP C  + + +C  +K P PR A+LR  +           
Sbjct: 46  TIYALSTAPGRAAIAIIRISGPDCIPIYKALCPDRKLPKPRFAALRTIYEPGKPLSADNA 105

Query: 61  LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--------LRLANPG 111
           LD G L+  FP+P + TGED  E HVHG  AV+  IL  + K           +R A PG
Sbjct: 106 LDSGALVFHFPAPNTVTGEDVLELHVHGSPAVIKSILSAIPKCAGPGDAPSASIRYAEPG 165

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+RRAF N ++DL + E+L + ++++TE QRRL++ G +  LS+ Y QW  +L + R  
Sbjct: 166 EFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQWRKQLLYARGE 225

Query: 172 IEADLDFSEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           +EA +DFSE++         +      +  L + I+ HI     GE++R+G K+ +LG  
Sbjct: 226 LEALIDFSEDQHFDESVDDFISSVTGQVDSLLHQINLHIKNASKGELLRSGIKVALLGAP 285

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---------- 278
           NAGKSSL N +  +D AIV+   GTTRD++ + +DL G+L K  D AG+R          
Sbjct: 286 NAGKSSLLNQIVGRDAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSKLSQSQLAA 345

Query: 279 -----ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI--------------SFPKN 319
                 T   +E+EGI+R       +D+++++  +   +E                   +
Sbjct: 346 QGHVVSTVGKIEEEGIRRAKARALESDVVIVVLSVEGSREQGLSLEPEVVSAVHSCLELD 405

Query: 320 IDFIFIGTKSDLYSTYTE--------------------EYDHLISSFTGE--------GL 351
              +    K+D+ S   E                    +    IS    +        G+
Sbjct: 406 KKVLVAINKTDMLSVEPECHVMPNYKAQVSAVFGGLDPDLIFPISCQEAQNSTGQDPGGI 465

Query: 352 EELINKIKSILSNKFKKL------------------PFSIPSHKRHLYHLSQTVRYLEMA 393
           + L+  +                               S+    R   +L    ++L   
Sbjct: 466 QSLLKGLIRTFEEISTPAGLHSDGKETGQQFDKSYWEGSLGVTHRQSSNLQICAQHLNDF 525

Query: 394 SLN------------------------EKDCGLDIIAENLRLASVSLGKITGC---VDVE 426
                                      EKD  + + AE+LR A+ SL KITG     DVE
Sbjct: 526 LSQINEGSITPDNAIDSIKNNMIIKQVEKDVDIVMAAEHLRFAAESLAKITGRGEGGDVE 585

Query: 427 QLLDIIFSK 435
            +L ++F K
Sbjct: 586 SVLGVVFEK 594


>gi|326484082|gb|EGE08092.1| tRNA modification GTPase [Trichophyton equinum CBS 127.97]
          Length = 594

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 155/549 (28%), Positives = 242/549 (44%), Gaps = 120/549 (21%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLD-----GRI 60
           TI+A+ST    +AI+IIR+SGP C  + + +C  +K P PR A+LR  +           
Sbjct: 46  TIYALSTAPGRAAIAIIRISGPDCIPIYKALCPDRKLPKPRFAALRTIYEPGKPLSADNA 105

Query: 61  LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--------LRLANPG 111
           LD G L+  FP+P + TGED  E HVHG  AV+  IL  + K           +R A PG
Sbjct: 106 LDSGALVFHFPAPNTVTGEDVLELHVHGSPAVIKSILSAIPKCAGPGDAPSASIRYAEPG 165

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+RRAF N ++DL + E+L + ++++TE QRRL++ G +  LS+ Y QW  +L + R  
Sbjct: 166 EFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQWRKQLLYARGE 225

Query: 172 IEADLDFSEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           +EA +DFSE++         +      +  L + I+ HI     GE++R+G K+ +LG  
Sbjct: 226 LEALIDFSEDQHFDESVDDFISSVTGQVDSLLHQINLHIKNASKGELLRSGIKVALLGAP 285

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---------- 278
           NAGKSSL N +  +D AIV+   GTTRD++ + +DL G+L K  D AG+R          
Sbjct: 286 NAGKSSLLNQIVGRDAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSKLSQSQLAA 345

Query: 279 -----ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI--------------SFPKN 319
                 T   +E+EGI+R       +D+++++  +   +E                   +
Sbjct: 346 QGHVVSTVGKIEEEGIRRAKARALESDVVIVVLSVEGSREQGLSLEPEVVSAVHSCLELD 405

Query: 320 IDFIFIGTKSDLYSTYTE--------------------EYDHLISSFTGE--------GL 351
              +    K+D+ S   E                    +    IS    +        G+
Sbjct: 406 KKVLVAINKTDMLSVEPECHVMPNYKAQVSAVFGGLDPDLIFPISCQEAQNSTGQDPGGI 465

Query: 352 EELINKIKSILSNKFKKL------------------PFSIPSHKRHLYHLSQTVRYLEMA 393
           + L+  +                               S+    R   +L    ++L   
Sbjct: 466 QSLLKGLIRTFEEISTPAGLHSDGKETGQQFDKSYWEDSLGVTHRQSSNLQICAQHLNDF 525

Query: 394 SLN------------------------EKDCGLDIIAENLRLASVSLGKITGC---VDVE 426
                                      EKD  + + AE+LR A+ SL KITG     DVE
Sbjct: 526 LSQINEGSITPDNAIDSIKNNMIIKQVEKDVDIVMAAEHLRFAAESLAKITGRGEGGDVE 585

Query: 427 QLLDIIFSK 435
            +L ++F K
Sbjct: 586 SVLGVVFEK 594


>gi|255713564|ref|XP_002553064.1| KLTH0D08074p [Lachancea thermotolerans]
 gi|238934444|emb|CAR22626.1| KLTH0D08074p [Lachancea thermotolerans]
          Length = 497

 Score =  319 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 149/482 (30%), Positives = 249/482 (51%), Gaps = 55/482 (11%)

Query: 7   TIFAVSTGAL-PSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDG---RIL 61
           TI+A+ST     SAI+++R++G  C  +   +   +  P PR+ SLR  +   G    +L
Sbjct: 23  TIYALSTSPGQRSAIAVVRVTGSHCKHIYYQLTGAQSPPVPRRCSLRNLYHAAGAKKNLL 82

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA------KMPNLRLANPGEFSR 115
           D  L++ F +P+SFTGED  E H+HGG AV+  +L  +       K  ++R A PGEFS+
Sbjct: 83  DSSLVLFFENPKSFTGEDMLELHLHGGRAVIKSVLGAIQSLGDQKKGLDIRYAQPGEFSQ 142

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF+NG++DL +AE +ADLI +ETE QRR +++   G+  +L+  W  ++    + + A 
Sbjct: 143 RAFQNGRMDLTQAEGVADLIDAETETQRRSALQSFRGQNKALFDGWRSQIVSGIAQLTAI 202

Query: 176 LDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           +DF E+ ++++  +    V  +++ L  +I   + + +   I++NG K+ +LG  NAGKS
Sbjct: 203 IDFGEDAEIEDTQAILDSVRRNMMNLDKEIKLFVLKIRRSSILQNGVKVALLGSPNAGKS 262

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRT 292
           SL N +   D +IV+D PGTTRD + + +D++GY V + DTAGIR E++D +E +GIKR 
Sbjct: 263 SLLNCITNDDTSIVSDTPGTTRDAIDVPIDVDGYKVVLCDTAGIRSESEDQIEIQGIKRA 322

Query: 293 FLEVENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYST--------- 334
             +   +DL++L+ +      ++            +   I    K+DL  T         
Sbjct: 323 KAKGSESDLVILVIDPTKTPLVTEDLQRFVKEQIPHNQVIIAVNKTDLVDTKGLKNVRQE 382

Query: 335 ----YTEEYDHLISSFTG-EGLEELINKIKSILSN--KFKKLPFSIPSHKRHLYHLSQTV 387
               +  ++     S T  EG+E L+ ++  +             +    R    L++ V
Sbjct: 383 VYQIFNGDFPIKSVSCTNFEGIENLVKELSHVFQGLSGTSHDSDPLIVSNRTEEILTKDV 442

Query: 388 RY-LEMASLNEKDCGLDIIAENLRLASVSLGKITGCV--------DVEQLLDIIFSKFCI 438
            + L+          + +  ENL  A+  +GKITG           V       FS+FC+
Sbjct: 443 MFGLQEFLSFPGTEDVVMACENLAYAAEGIGKITGASVGVEEVLGVV-------FSRFCV 495

Query: 439 GK 440
           GK
Sbjct: 496 GK 497


>gi|313112541|ref|ZP_07798206.1| tRNA modification GTPase TrmE [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310625141|gb|EFQ08431.1| tRNA modification GTPase TrmE [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 475

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 216/459 (47%), Gaps = 22/459 (4%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG--- 58
             ++ TI A++T      I+++RLSG   + +   + +      +  + + +  + G   
Sbjct: 19  TMQETTIAAIATAPGAGGIAVVRLSGAESYPIAARVFRPANAAKKVENAKGYTAMYGTFR 78

Query: 59  ---RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
                 D+G+ + F +P S+TGED  E   HGG AV   ++E          A PGE++R
Sbjct: 79  EGDEAFDEGVALFFRAPHSYTGEDVVELSCHGGSAVARRLVEACLAAGAQ-PAAPGEYTR 137

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NGK+ L +AE++ DLIS++      L+   + G L+       + LT I++ + A 
Sbjct: 138 RAFLNGKLGLTQAEAVMDLISADGRQGAALANAALGGALAKKISAQKEALTAIQAHLAAW 197

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +DF E EDV       +   +  +K ++   I   +   ++R G    I+G  NAGKS+L
Sbjct: 198 VDFPE-EDVPELDGDHLHRVLSGVKAELDELIHNYQADTVLREGVDCAIVGRPNAGKSTL 256

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N LA  D AIVT + GTTRDV+   + L    + + DTAG+RET+D +E EGI+R++ +
Sbjct: 257 LNLLAGFDRAIVTPVAGTTRDVVEQAVQLGDIQLNLFDTAGLRETEDAIEAEGIRRSWKK 316

Query: 296 VENADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLI------ 343
           +E A LIL + + +   +++++   +       I +  K D  + +  E           
Sbjct: 317 LEEAGLILAVFDGSEPPTREDLELAQRCTGRPAIALINKEDKPTQFDAELIAPCFAMVLP 376

Query: 344 -SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR-YLEMASLNEKDCG 401
                 E  + +   +  +L         +  S +R L    +                G
Sbjct: 377 VCCQEEESRKVISAAVARLLGTSQIDPHAASLSGQRQLSAALRARDAVAGALDAAAGGFG 436

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           LD ++  +  A  +L  +TG    E +++ +F +FC+GK
Sbjct: 437 LDAVSVCVDDALAALCDLTGENASEAVIEQVFERFCVGK 475


>gi|332296911|ref|YP_004438833.1| tRNA modification GTPase mnmE [Treponema brennaborense DSM 12168]
 gi|332180014|gb|AEE15702.1| tRNA modification GTPase mnmE [Treponema brennaborense DSM 12168]
          Length = 509

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 140/489 (28%), Positives = 222/489 (45%), Gaps = 71/489 (14%)

Query: 20  ISIIRLSGPSCFQVCEFICKKKKPFPRKAS----LRYFFGLDG---RILDKGLLIVFPSP 72
           + IIR SG  C ++   +  + +     A       +     G   R +D+ L+ VF +P
Sbjct: 24  LGIIRTSGKGCIELVAALFSRPEALRNAAGNTLVYGWIVDPAGGGVRRIDEVLISVFRAP 83

Query: 73  ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132
           +SFTGED AE   HGG A+V GI   L      R A  GEF+ RAF NGK DL  AE++ 
Sbjct: 84  KSFTGEDMAEICCHGGPAIVTGIY-RLLTENGFRAAQHGEFTFRAFINGKADLTRAEAVH 142

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           ++IS++T+  R  +   ++G L         +L    + +EA++++ E  D +  +    
Sbjct: 143 EIISAKTDESRGRAAGRLAGSLYDEISAVKKELVATLASVEAEIEYPE--DEETIADAFD 200

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  ++ +++S  S     ++ ++G ++V+ G +NAGKSSLFN L K++ AIV+DI G
Sbjct: 201 DTRLRRVETELASLCSSWASEKLYQDGARVVLCGRTNAGKSSLFNMLLKEERAIVSDIHG 260

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----I 308
           TTRD L       G   ++ DTAG+RETDD+VE+ G++RTF   ++ADLIL + +    I
Sbjct: 261 TTRDWLESWASFGGIPARLFDTAGLRETDDVVEQSGVRRTFDLTKDADLILYVVDAVEGI 320

Query: 309 NSKKEISFPK-------NIDFIFIGTKSDLYST--------------------------- 334
             + E                I I  K D  S                            
Sbjct: 321 TDEDESFLTAFAAAPNVRTPLILILNKCDKLSESGDSAAMHAATMNTATMNTDAATRHTA 380

Query: 335 ---------------------YTEEYDHLISSFTGEGLEELINKIKSILSNKF-KKLPFS 372
                                ++      +S+ TG G   L   IK+ L+          
Sbjct: 381 AFNSAGSTTAEDFTSNAALGSFSPAAAVRLSAKTGSGTAALTKAIKACLTAAASTDREQP 440

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
                R        +  +  A L   ++  LD +A+++  A  +LG+ITG V  + +LD 
Sbjct: 441 GLGSARQKQCAQDALDSVRHALLAARQNYPLDAVAQDMEDALDALGEITGAVTPDDILDT 500

Query: 432 IFSKFCIGK 440
           +FS FC+GK
Sbjct: 501 VFSNFCLGK 509


>gi|254438770|ref|ZP_05052264.1| GTPase, putative [Octadecabacter antarcticus 307]
 gi|198254216|gb|EDY78530.1| GTPase, putative [Octadecabacter antarcticus 307]
          Length = 396

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 143/393 (36%), Positives = 211/393 (53%), Gaps = 10/393 (2%)

Query: 50  LRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109
           L      DG ++D+   I F    SFTGE   E   HG  AVV+ +L  L  +  LR A 
Sbjct: 12  LVNLITTDGSLIDQAFSISFGPRRSFTGEQVVELQTHGSPAVVSAVLNRLGAL-GLRPAE 70

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRA +NG +DL + E LADLI +ETE QRR ++    G L  L   W   L    
Sbjct: 71  PGEFTRRAMDNGVLDLAQVEGLADLIDAETESQRRQAVRVFQGALGDLASGWRTSLVRAA 130

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           + +EA +DF + EDV      EV   I  +  ++    +  K+ E +R+G+++ ++G  N
Sbjct: 131 ALLEATIDFVD-EDVPVDVYPEVRTLIHVVSKEVRHEAAGVKVRERVRDGFEVALVGPPN 189

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
           +GKS+L N LA ++ AI +DI GTTRDV+ + +DL+G  V I DTAG+RE+DD++E  GI
Sbjct: 190 SGKSTLLNRLAGREAAITSDIAGTTRDVIEVRMDLDGLPVTILDTAGLRESDDVLEGIGI 249

Query: 290 KRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
            R       AD+ + L +  S   +     +D     +K+DL      +    +S  TG 
Sbjct: 250 ARGKDRAAAADIRVHLMDNLSSDSVQSDFGLDIYT-KSKADLVIPPARD---GVSGETGY 305

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE--KDCGLDIIAE 407
           G++ L+ +I S L  +       + +  RH   L      L+  +L     D  +D+++E
Sbjct: 306 GMDRLLGQISSHLREQLA--GAGVATRMRHQRALETAADALDTVTLGLTVVDMPVDLLSE 363

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LR+A  SL  + G VDVE +L  IFS FCIGK
Sbjct: 364 DLRIAIRSLDSLIGRVDVENVLGEIFSSFCIGK 396


>gi|326386157|ref|ZP_08207781.1| tRNA modification GTPase TrmE [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209382|gb|EGD60175.1| tRNA modification GTPase TrmE [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 432

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 167/441 (37%), Positives = 231/441 (52%), Gaps = 18/441 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64
           +TIFA+S+G LP+AI ++R+SGP      E +  +  P PR+A +      D G +LD+ 
Sbjct: 4   DTIFALSSGQLPAAIGVMRISGPQAGLALERLAGR-LPSPRRAGVAALRHPDHGEVLDRT 62

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++  P P + TGED AE H+HGG AV   + EE      LR A PGEF+RRAF NG+ID
Sbjct: 63  LVLWLPGPHNATGEDCAELHLHGGRAVAAAV-EEALLALGLRRAEPGEFTRRAFANGRID 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L EAE LADL+ +ETE+QRR +     G LS     W+  L  + + +EA LDF++E DV
Sbjct: 122 LAEAEGLADLLEAETELQRRSAQAMAGGALSRAVESWLQTLLGLSARLEASLDFADEGDV 181

Query: 185 QNFSSKEVL---NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            +  +   +        L +D+   +S+    E +R GY++V+ G  NAGKS+LFNAL +
Sbjct: 182 DDGEATLPVGFGEACTRLVDDLGEWLSR-PRAEPLREGYRVVLAGPPNAGKSTLFNALVE 240

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENAD 300
            + AI++  PGTTRDVL   + L G      DTAG+RE     VE  GI R   E E AD
Sbjct: 241 SEAAIISAEPGTTRDVLVQGVALAGVPFSFVDTAGLREEGVGAVEAIGIARARAEAERAD 300

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIK 359
           L+L L       E   P+      I  + D      +      +S+ TGEGL  L   + 
Sbjct: 301 LVLWL-----GPEGEGPQGPHVWEIAAQCDREDQAAKIAPMFRVSARTGEGLGTLREALV 355

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
               +     P     ++R    L Q    L  A L        + AE LRLA  +   +
Sbjct: 356 ERARSAM-PAPGQAALNRRQHDLLDQAQAALRSACLERDPL---LAAECLRLARQAFDAL 411

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG  D E +LD +F +FCIGK
Sbjct: 412 TGRADTEAMLDALFGRFCIGK 432


>gi|149185268|ref|ZP_01863585.1| tRNA modification GTPase [Erythrobacter sp. SD-21]
 gi|148831379|gb|EDL49813.1| tRNA modification GTPase [Erythrobacter sp. SD-21]
          Length = 424

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 155/451 (34%), Positives = 231/451 (51%), Gaps = 45/451 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TIFA+S+GA P+AI ++R+SGP      E +     P  R+AS+R   G DGR+LD+ L
Sbjct: 3   DTIFALSSGAPPAAIGVVRISGPLAGDTVEAMTG-ALPGERRASVRAVKGADGRVLDRAL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP P++ TGED AEFH HGG AV+  I  +LA    LR A PGEF+RRAF NG IDL
Sbjct: 62  VLWFPGPKTATGEDLAEFHCHGGRAVIAAIEADLAARDGLRRAEPGEFTRRAFANGVIDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            EAE L DL+S+ETE+QRR +     G LS     W  ++  + + +E+ LDF +E+DV 
Sbjct: 122 AEAEGLGDLLSAETELQRRAAEAAAGGGLSQKVEGWRSRVLGLSALVESQLDFGDEDDVG 181

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
               +    ++  L  +    +      E +++G ++V+ G  N GKSSLFNAL  +  A
Sbjct: 182 ELP-EMFHVELSGLLGEWRRALD-APQIERLKDGIRVVLAGPPNTGKSSLFNALLDEGAA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD-IVEKEGIKRTFLEVENADLILL 304
           IV+   GTTRDV+   + L      + DTAG+R+     +E+ GI R   ++E AD++L 
Sbjct: 240 IVSAEAGTTRDVIERPIALGSVPFVLVDTAGLRDDSAGEIERIGIDRARDQLERADIVLW 299

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           L +     +           IG + DL  +     D+ +S  TG G+E+L+  +     N
Sbjct: 300 LGDEGRGPDGCLE-------IGARVDLGDSRKTSPDYEVSVVTGSGIEDLVRGLIENSRN 352

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV- 423
              + P  +  + R    L+     L+       D G D++             +TG   
Sbjct: 353 LLPR-PGEVALNFRQTSALNDAHEALQ-----GIDEGDDVL-------------LTGERL 393

Query: 424 --------------DVEQLLDIIFSKFCIGK 440
                           E +LD +F +FCIGK
Sbjct: 394 RLARLALDRLLGRHSTEDMLDALFGRFCIGK 424


>gi|302306610|ref|NP_983009.3| ABR063Cp [Ashbya gossypii ATCC 10895]
 gi|299788599|gb|AAS50833.3| ABR063Cp [Ashbya gossypii ATCC 10895]
          Length = 493

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 148/481 (30%), Positives = 238/481 (49%), Gaps = 54/481 (11%)

Query: 7   TIFAVSTGAL-PSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLDGRI---- 60
           TI+A+ST     SAI+++R+SG     V E +   K+ P PR+ASLR  +          
Sbjct: 20  TIYALSTPMGQKSAIAVVRVSGTHARLVYEKLTDSKRPPTPRRASLRNLYSPQSAPEKVF 79

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFS 114
           LD  L + F  P +FTGED  E HVHGG AVV G+L+ +  + +      +R A  GEFS
Sbjct: 80  LDSALTLFFEQPGTFTGEDILELHVHGGKAVVAGVLDAIGALHDESAGVQIRYAEAGEFS 139

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAF+NG+ DL E E + +LI +ETE QRR ++    G+   L+  W  ++    + + A
Sbjct: 140 RRAFQNGRFDLTEIEGIGELIDAETETQRRSAISSFRGQNRLLFAGWRQQIVDNIAQVAA 199

Query: 175 DLDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
            +DF ++ ++Q+  +  + V   +  L+ +++  + +     I+++G ++ +LG  NAGK
Sbjct: 200 IIDFGDDTEIQDIDAILEGVRCSVKALRREVADFVERVTRSTILQSGIRLSVLGAPNAGK 259

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKR 291
           SSL N + K D +IV+ IPGTTRD + + LD+ GY V ++DTAG+R  + D +E  GI R
Sbjct: 260 SSLVNCITKDDTSIVSSIPGTTRDAIDVPLDINGYKVILTDTAGVRAHSTDPIELIGIAR 319

Query: 292 TFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
                  +D++LL+ +  +        +  +    +   + +  KSDL      +Y    
Sbjct: 320 AQERTARSDIVLLVVDATAATPLSPALRSHLRDLTDKCRLVVINKSDLVPPSRLKYIQTQ 379

Query: 344 --------------SSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVR 388
                         S    +GL+ L++ + S  ++         I    R    L Q V 
Sbjct: 380 LAAELPDCGPALVISCKQRDGLDALVHALTSHFTDLASCAAADPIAISARARDILRQDVL 439

Query: 389 Y-LEMASLNEKDCGLDIIAENLRLASVSLGKITGC--------VDVEQLLDIIFSKFCIG 439
             L+          +D+ +E+LR A+  +G ITG           V       FS FC+G
Sbjct: 440 AGLDGFLRLASSAEVDVASESLRSAADGIGTITGDAVGVEEVLGVV-------FSNFCVG 492

Query: 440 K 440
           K
Sbjct: 493 K 493


>gi|303322326|ref|XP_003071156.1| GTPase family protein [Coccidioides posadasii C735 delta SOWgp]
 gi|240110855|gb|EER29011.1| GTPase family protein [Coccidioides posadasii C735 delta SOWgp]
          Length = 628

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 155/555 (27%), Positives = 244/555 (43%), Gaps = 126/555 (22%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-----DGRI 60
           TI+A+ST    +AI+I+R+SGP+C QV + +C     P PR A+LR             +
Sbjct: 60  TIYALSTAPGRAAIAIVRVSGPACIQVYKGLCPGSPLPKPRYATLRTLCDPTQSPSSNAV 119

Query: 61  LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM----------PNLRLAN 109
           LD G L++ FP+P++ TGED  E H+HG  AV+  +L  + K             +R A 
Sbjct: 120 LDSGALVLYFPAPKTVTGEDVLELHIHGSPAVIKAVLNAIPKCLENKIETGLESCIRYAE 179

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G S  LS+ Y  W  +L + R
Sbjct: 180 PGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENWRQQLLYAR 239

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
             +EA +DFSE++         +++    +  L N I  HI     GE++R+G KI +LG
Sbjct: 240 GELEALIDFSEDQHFDESVDDFMISVTGQVRKLLNQIDVHIENASKGELLRSGIKIALLG 299

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD---- 282
             NAGKSSL N +  ++ AIV+   GTTRD++ + +DL G+L K  D AG+R        
Sbjct: 300 APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSAPPKLIG 359

Query: 283 ----------IVEKEGIKRTFLEVENADLILLLKEINSKK---------------EISFP 317
                      VE+EGI+R       +DL++ +  +   +               E    
Sbjct: 360 EERKDSTVIGEVEREGIRRAKARALESDLVIAVLSLEENQHGSALKLEAEVVGAIEDCLR 419

Query: 318 KNIDFIFIGTKSDLY------STYTEEYDHLISSFTG----------------------- 348
            +   I    K+D          Y+   + + S+F G                       
Sbjct: 420 LDKRVIVAINKTDRLNSDVTSRQYSNVVERICSTFQGLDKNQIYAISCKDAQDGSPDRRD 479

Query: 349 -----EGLEELINKIKSILSNKFKKLP----------FSIPSHKRHLYHLSQTVRYLEMA 393
                  L  LI+  + +      +             S+    R   +L    ++L   
Sbjct: 480 PGNIQNFLRGLIHTFEEMAMPSRSEDEDNRYDLSYYQDSLGVTHRQSSNLKTCAQHLRDF 539

Query: 394 S------------------------------LNEKDCGLDIIAENLRLASVSLGKITGC- 422
                                           +E +  + + AE+LR A+ SL KITG  
Sbjct: 540 LSQTVQIQHANIASDNNNAQTPENALAKGQMFDENEVDIVLAAEHLRFAADSLAKITGRG 599

Query: 423 --VDVEQLLDIIFSK 435
              DVE +L ++F K
Sbjct: 600 EGGDVESVLGVVFEK 614


>gi|119196533|ref|XP_001248870.1| hypothetical protein CIMG_02641 [Coccidioides immitis RS]
          Length = 628

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 154/555 (27%), Positives = 244/555 (43%), Gaps = 126/555 (22%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-----DGRI 60
           TI+A+ST    +AI+I+R+SGP+C QV + +C     P PR A+LR             +
Sbjct: 60  TIYALSTAPGRAAIAIVRVSGPACVQVYKGLCPGSPLPKPRYATLRTLCDPTQSPSSNAV 119

Query: 61  LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM----------PNLRLAN 109
           LD G L++ FP+P++ TGED  E H+HG  AV+  +L  + K             +R A 
Sbjct: 120 LDSGALVLYFPAPKTVTGEDVLELHIHGSPAVIKAVLNAIPKCLENKIETGLESCIRYAE 179

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G S  LS+ Y  W  +L + R
Sbjct: 180 PGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENWRQQLLYAR 239

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
             +EA +DFSE++         +++    +  L N I  HI     GE++R+G KI +LG
Sbjct: 240 GELEALIDFSEDQHFDESVDDFMISVTGQVRKLLNQIDVHIENASKGELLRSGIKIALLG 299

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD---- 282
             NAGKSSL N +  ++ AIV+   GTTRD++ + +DL G+L K  D AG+R        
Sbjct: 300 APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSAPPKLIG 359

Query: 283 ----------IVEKEGIKRTFLEVENADLILLLKEINSKK---------------EISFP 317
                      VE+EGI+R       +DL++ +  +   +               E    
Sbjct: 360 EERKDSTVIGEVEREGIRRAKARALESDLVIAVLSLEENQHGSALKLEAEVVGAIEDCLR 419

Query: 318 KNIDFIFIGTKSDLY------STYTEEYDHLISSFTG----------------------- 348
            +   +    K+D          Y+   + + S+F G                       
Sbjct: 420 LDKRVVVAINKTDRLNSDVTSRQYSNVVERICSTFQGLDKNRIYAISCKDAQDGSPDRRD 479

Query: 349 -----EGLEELINKIKSILSNKFKKLP----------FSIPSHKRHLYHLSQTVRYLEMA 393
                  L  LI+  + +      +             S+    R   +L    ++L   
Sbjct: 480 PGNIQNFLRGLIHTFEEMAMPSRSEDEDNRYDLSYYQDSLGVTHRQSSNLKTCAQHLRDF 539

Query: 394 S------------------------------LNEKDCGLDIIAENLRLASVSLGKITGC- 422
                                           +E +  + + AE+LR A+ SL KITG  
Sbjct: 540 LSQTVQIQHANIASDNNNAQTPENALAKGQMFDENEVDIVLAAEHLRFAADSLAKITGRG 599

Query: 423 --VDVEQLLDIIFSK 435
              DVE +L ++F K
Sbjct: 600 EGGDVESVLGVVFEK 614


>gi|121703576|ref|XP_001270052.1| mitochondrial GTPase (Mss1), putative [Aspergillus clavatus NRRL 1]
 gi|119398196|gb|EAW08626.1| mitochondrial GTPase (Mss1), putative [Aspergillus clavatus NRRL 1]
          Length = 572

 Score =  317 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 153/537 (28%), Positives = 247/537 (45%), Gaps = 108/537 (20%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGLD-----GRI 60
           TI+A+ST    +AI+++RLSGP+C QV   +C   + P PR A++R  +          +
Sbjct: 36  TIYALSTAPGRAAIAVVRLSGPACVQVYHALCPNARLPRPRIAAVRTVYDPTQKPSANTV 95

Query: 61  LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-----LRLANPGEFS 114
           LD G L++ FP P++ TGED  EFH+HGG A+V  +L  +A+        +R A PGEF+
Sbjct: 96  LDTGALVLYFPGPKTVTGEDVLEFHLHGGPAIVRSVLAAIARTSRPDESLVRYAEPGEFT 155

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRAF N ++ L + E+L D ++++TE QRRL++ G S  LS  Y  W  +L + R  +EA
Sbjct: 156 RRAFMNNRLGLPQIEALGDTLTADTEQQRRLAVRGASDALSKRYELWRQQLLYARGELEA 215

Query: 175 DLDFSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
            +DFSE++       + + +    +  L+  +  H+     GE++RNG KI +LG  NAG
Sbjct: 216 LIDFSEDQHFDESPVELISSVAVQVRALQAQLKLHVENASKGELLRNGIKIALLGAPNAG 275

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--------DI 283
           KSSL N +  K+ AIV+   GTTRD++ + +D+ G+  K+ D AGIR  +          
Sbjct: 276 KSSLLNRVVGKEAAIVSTEEGTTRDIVDVGVDVGGWYCKLGDMAGIRSENSSQRTVVIGA 335

Query: 284 VEKEGIKRTFLEVENADLILLLKEINS-----------KKEI------SFPKNIDFIFIG 326
           VEKEGI+R       +D+I+++  +             ++E+              +   
Sbjct: 336 VEKEGIRRARARALESDVIVVVLSLEEGANGSPYRLSVEQEVVDAVSDCVQAGKCIVVAI 395

Query: 327 TKSD---------------------LYSTYTEEYDHLISSFTGEG--------------- 350
            K D                     L+    E+    IS                     
Sbjct: 396 NKCDRLPVADRLGQPLHDLRERIRTLFPAVPEKRIFSISCQEATQGVSLAQADPGNLQGF 455

Query: 351 LEELINKIKSIL-----------SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA------ 393
           +  LI+  + I                     S+    R   +L + +++L+        
Sbjct: 456 MRGLISTFEEIASPTGLEGDENGQYDISYWEDSLGVTHRQSSNLQRCLQHLDDFLNQTRQ 515

Query: 394 ------------SLNEKDCGLDIIAENLRLASVSLGKITGC---VDVEQLLDIIFSK 435
                          E++  + + AE+LR A+ +L KITG     DVE +L ++F K
Sbjct: 516 SQTPQILGYAQDKTIEEEVDIVMAAEHLRFAADALAKITGQGESGDVEDVLGVVFEK 572


>gi|145607203|ref|XP_361596.2| hypothetical protein MGG_04070 [Magnaporthe oryzae 70-15]
 gi|145014795|gb|EDJ99363.1| hypothetical protein MGG_04070 [Magnaporthe oryzae 70-15]
          Length = 525

 Score =  317 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 156/517 (30%), Positives = 253/517 (48%), Gaps = 94/517 (18%)

Query: 17  PSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLDGR-----ILDKG-LLIVF 69
            + I++IR+SGP C ++   +C  KK P PR A++R  +  + R     +LD G L++ F
Sbjct: 10  RAGIAVIRISGPDCLEIYRRLCPGKKPPKPRYAAVRTLYAPENRPGTPDVLDSGALVLYF 69

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL----RLANPGEFSRRAFENGKIDL 125
           P P++ TGED  E H HGG A V  +L  + +        R A+PGEF+RRAF N ++DL
Sbjct: 70  PGPKTVTGEDVLELHTHGGRATVKSVLSAIPQCAPAASRVRYADPGEFTRRAFFNDRLDL 129

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            + ESL D + +ETE QRR ++ G SG L + Y  W ++L   R+ IEA +DFSE++   
Sbjct: 130 AQVESLGDALDAETEQQRRAAVRGSSGRLGASYDNWRERLLLARAEIEALIDFSEDQHFD 189

Query: 186 NFSSKEVLNDILFLKNDISSHIS----QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             S +E+L  ++    DI + I+      K  E++R G +I +LG  N GKSSL N +  
Sbjct: 190 E-SPRELLQSVVGQVRDILALIALHEMGSKRSELLRKGIRIALLGPPNVGKSSLMNLIVG 248

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD----------DIVEKEGIKR 291
           ++ +IV+   GTTRD++   LD+ GYL   +DTAG R  +           IVEKEGI+R
Sbjct: 249 REASIVSTEAGTTRDIVEASLDIRGYLCTFADTAGFRSEETTDASSPAEIGIVEKEGIRR 308

Query: 292 TFLEVENADLILLLKEIN-----------SKKEISFPKNIDFIF-IGTKSD------LYS 333
              +   +D++++L  +             ++ +           +  KS+      L +
Sbjct: 309 ARSKAIGSDIVVVLASVEKQGNGEYSICYEQETVQLAAQAPQSLVVINKSEQVPASALKT 368

Query: 334 TYTEEYDHLISSFTG-EGLEEL------------------------INKIKSILSNKFK- 367
                   +++ F+G +G E L                        I+ +   LS +F+ 
Sbjct: 369 LVAGFKARVLAPFSGLQGAEPLVISCKEGGNADAVGLKNNEADPGAIHALVDSLSARFES 428

Query: 368 ------KLPFSIPSHKRHLYHLSQTVRYLEMAS---------------LNEKDCGLDIIA 406
                  +   +   +R    L++   +L+                   +E+D  + + A
Sbjct: 429 LTSLPDDMQDLLGVTERQGQLLARCRGHLDDFISEATRSSDEPGSQIYQHEEDIDVVLAA 488

Query: 407 ENLRLASVSLGKITGC---VDVEQLLDIIFSKFCIGK 440
           E+LR A+ +L +ITG     D E++L +IF KFC+GK
Sbjct: 489 EHLRYAANALAEITGRGGYGDTEEVLGVIFEKFCVGK 525


>gi|56807533|ref|ZP_00365460.1| COG0486: Predicted GTPase [Streptococcus pyogenes M49 591]
          Length = 291

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 105/291 (36%), Positives = 173/291 (59%), Gaps = 7/291 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+ + ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIYEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  +       ++ + + +   K G+I+R G    I+G  N GKSSL
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
            N L ++D AIVTDI GTTRDV+   ++++G   K+ DTAGIRETDD+VE+
Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPSKLVDTAGIRETDDLVEQ 291


>gi|154149158|ref|YP_001406236.1| tRNA modification GTPase TrmE [Campylobacter hominis ATCC BAA-381]
 gi|205829130|sp|A7I145|MNME_CAMHC RecName: Full=tRNA modification GTPase mnmE
 gi|153805167|gb|ABS52174.1| tRNA modification GTPase TrmE [Campylobacter hominis ATCC BAA-381]
          Length = 466

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 222/469 (47%), Gaps = 37/469 (7%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----------------------CKKK 41
            ETI AV+T      ISI+RLSG +   + + +                        KK 
Sbjct: 2   SETIVAVATAHGIGGISIVRLSGENALSLSDILINKNRKKNKTQNSVSSSQNRIQNFKKI 61

Query: 42  KPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK 101
              PR A+L   +  DG  +D+ ++I + SP SFTGED  EF +HGG  + N I++EL  
Sbjct: 62  NLKPRYATLCELYDNDGNFMDESVVIYYKSPNSFTGEDIVEFQIHGGFTLENLIMDELI- 120

Query: 102 MPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQW 161
               R+A PGEFS+RAF N K+DL +AE++  +I S ++   ++    + GEL +     
Sbjct: 121 TNGARIAMPGEFSKRAFLNDKMDLSKAEAIQSIILSRSKSAAKILARNLHGELKNFVIDL 180

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
             ++    +F+E  +D+++ +D+ N    ++ N +      I            +  G+K
Sbjct: 181 RKEIVKTMAFVETCIDYAD-DDLPNDILDKIQNLLSENITKIDEITQISASRRGLLEGFK 239

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSS+ N+L K   AIV+D  GTTRD +  +L +  +L++I DTAGIR+++
Sbjct: 240 VAIIGKPNVGKSSILNSLLKFSRAIVSDEAGTTRDRIEENLQIGSHLIRIIDTAGIRKSE 299

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           + VE  GI  +      AD+IL + + + + +    K   F  +  + D           
Sbjct: 300 NSVENIGISYSIKAANEADIILAVFDASREFDKEDEK--IFEILQNQKDKKIIKILNKID 357

Query: 342 LISSFTGEGLEELIN-------KIKSILSNKF---KKLPFSIPSHKRHLYHLSQTVRYLE 391
           L   F     +  +        KI + + N +   +     + S  R +   S   + L+
Sbjct: 358 LALKFKAGNSDNFLKISAKNDTKIITKVLNDYLNSQNFDGIMLSSNRQIMAFSNAGKALK 417

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A     +  L++ A  L +A   +  I    + +++L+ +FS FC+GK
Sbjct: 418 RAQNLLNENSLELFAFELNIAIKEIASIYKPFERDEILESMFSNFCLGK 466


>gi|312210491|emb|CBX90578.1| hypothetical protein [Leptosphaeria maculans]
          Length = 723

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 149/522 (28%), Positives = 244/522 (46%), Gaps = 97/522 (18%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD---- 57
           H+  TI+A+ST    +AI++IR+SG +C Q+   +C     P PR+A+LR  +  +    
Sbjct: 76  HDDPTIYALSTAPGRAAIAVIRISGSACRQIYHALCPSAAFPKPRQATLRKLYTPNISPS 135

Query: 58  -GRILDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-------------AKM 102
              +LD G L++ FP+P + TGED  E HVHGG A+V  +L  +                
Sbjct: 136 PATLLDSGALVLYFPAPSTVTGEDLLELHVHGGPAIVRAVLAAIPACTKVADAVSGGTAA 195

Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162
             +R A PGEF+RRAF N ++DL + ESL + +S+ TE QR+LS+ G +  L++ Y QW 
Sbjct: 196 AQIRYAEPGEFTRRAFANNRMDLPQIESLGETLSATTEEQRKLSVRGTTSSLAARYEQWR 255

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFS---SKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
             L   R  +EA +DFSE++            V   +  L+  + +H++    GE++RNG
Sbjct: 256 MLLLAARGELEALIDFSEDQHFDESPAVLCASVAKQVHSLRIHMEAHVANAVRGELLRNG 315

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
             + +LG  NAGKSSL N +  +D AIV+   GTTRDV+ + LDL G+LVK+ D AG+R 
Sbjct: 316 ISVALLGAPNAGKSSLLNRIVGRDAAIVSHEAGTTRDVVEVGLDLGGWLVKMGDMAGLRR 375

Query: 279 ------ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIF 324
                 E+   +EKEGI+R       +D+++++++  ++ +    +         I  + 
Sbjct: 376 AGLLGEESVGAIEKEGIRRAKQRAFESDVLVVVQDATTEMDPEVMETAKQCVGMGISVLV 435

Query: 325 IGTKSDLYSTYTEEYDHLISSF----------------------TGEGLEELINKIKSIL 362
              K D  +     +    +                            ++  +N + +  
Sbjct: 436 AINKCDRLTEPDSAHAAWRAVLQPSLGISNNQVSFVSCKEATPSNAGDMQAFLNNLLNTF 495

Query: 363 SNKFKKL-----PFSIPSH------KRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN--- 408
                 L     P            +R    LS+ + YL+             ++ +   
Sbjct: 496 RTMTSALVPDSDPDPSIWQESLGATERQRVLLSECLIYLDTFLTT--------VSADGSE 547

Query: 409 ------------LRLASVSLGKITGC---VDVEQLLDIIFSK 435
                       LR A+ +LG+ITG     DVE++L ++F K
Sbjct: 548 EEEVDVVVAAESLRSAAEALGRITGRGESGDVEEVLGVVFEK 589


>gi|297276443|ref|XP_001114421.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like,
           partial [Macaca mulatta]
          Length = 330

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 131/298 (43%), Positives = 186/298 (62%), Gaps = 4/298 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGPS       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPSSGHALRILTAARDLPPARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF NGK++
Sbjct: 95  LVLWFPGPRSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GEL  L   W + LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    ++   ++  L+  + +H+   + G+ +R+G  +V+ G  NAGKSSL N L++K V
Sbjct: 215 EEGVLEQADIEVRALEVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+EG++R       AD +
Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARE--RWADRV 330


>gi|91228358|ref|ZP_01262286.1| tRNA modification GTPase [Vibrio alginolyticus 12G01]
 gi|91188118|gb|EAS74422.1| tRNA modification GTPase [Vibrio alginolyticus 12G01]
          Length = 288

 Score =  315 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 115/289 (39%), Positives = 172/289 (59%), Gaps = 2/289 (0%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
             +TI A +T      + IIR+SGP   QV   +   K   PR A    F   DG +LD+
Sbjct: 2   TTDTIVAQATAPGRGGVGIIRVSGPKANQVALEVTG-KTLKPRYAEYLPFKSEDGTVLDQ 60

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           G+ + FP+P SFTGED  E   HGG  V++ +++ +  +  +R A PGEFS RAF N K+
Sbjct: 61  GIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGIRAARPGEFSERAFLNDKL 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           DL +AE++ADLI + +E   + +++ + G  S      ++ L H+R ++EA +DF E E+
Sbjct: 121 DLAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPE-EE 179

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  +V  D+  + +++ +   +   G I+R G K+VI G  NAGKSSL NAL+ K+
Sbjct: 180 IDFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
            AIVTDI GTTRDVL   + ++G  + I DTA +R+  D VEK GI+R 
Sbjct: 240 SAIVTDIAGTTRDVLREHIHIDGMPLHIIDTARLRDASDEVEKIGIERA 288


>gi|330898612|gb|EGH30031.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 294

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 115/294 (39%), Positives = 174/294 (59%), Gaps = 3/294 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN  +ETI A++T      + I+R+SGP   +  E I  +    PR A    F    G++
Sbjct: 1   MNVPRETIAAIATAQGRGGVGIVRMSGPLAGKAAEAIIGR-ILKPRFAHYGPFVDDAGQV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  V++ +L+   ++   RLA PGEFS RAF N
Sbjct: 60  LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GSRLARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +    R ++  + G  S       +KL  +R ++EA +DF E
Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   +   VL  I  ++ ++S+ + +   G ++R+G  +VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLADGHVLKMIDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
            ++ AIVT+I GTTRDVL   + ++G  + + DTAG+R+T D VE  G++R   
Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALR 291


>gi|321311014|ref|YP_004193343.1| tRNA modification GTPase [Mycoplasma haemofelis str. Langford 1]
 gi|319802858|emb|CBY93504.1| tRNA modification GTPase [Mycoplasma haemofelis str. Langford 1]
          Length = 431

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 131/441 (29%), Positives = 222/441 (50%), Gaps = 19/441 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLDGRILDKGL 65
           TI A++T     A+ +IR+SG   F++   I          +  + +    + +++D+ +
Sbjct: 3   TIVALATPPGIGALHVIRVSGSEAFEILNRISINPVLRTEDRIQVTFLKSRNNKLIDQVV 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L  F +P S+TGED  E   HG   +   I+EE+ K      A  GEF++RAF N KIDL
Sbjct: 63  LSKFYAPHSYTGEDCIEISCHGNSLISKLIIEEILK-NGAVHAKRGEFTKRAFLNNKIDL 121

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +A S+ +L ++ +E +    +E + G  S L   +I++L+ IRS  E ++D+  + +V+
Sbjct: 122 NQAISIGNLFAANSEGEIYSFVEEIKGATSKLIHSFIEELSSIRSECEMNIDYPPDIEVE 181

Query: 186 NFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +     ++   I  L + +   +   K  ++  +G+++V++G  NAGKSSL N L  KD 
Sbjct: 182 DSKFIGDIQERISSLHSKLLFFLESSKKQKL--SGFRVVLVGRPNAGKSSLINHLIGKDK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
            IV+   GTTRD + +D   + YL+ + DTAGI E DD +  E I+R+   + +ADL++ 
Sbjct: 240 IIVSPEAGTTRDTVEVDYQFDDYLLTLVDTAGIYEVDDFLTNESIRRSKDAIRDADLLVH 299

Query: 305 LKEINSKKEISFP----KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           L  +  KK +            I I TKSDL+    E       S     + E +  +++
Sbjct: 300 LVSLEDKKNLKELVGEFGGKSVITIFTKSDLFPHTRES---NCISVKNSEISEFLRLLRN 356

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
            L   +  +       +  + HL+ +   LE    +     LD+IAE+L  A   L +I 
Sbjct: 357 HLKENYSSVG---VKSQEGINHLNNSCLELEK---SLGALSLDLIAEHLNFAHDHLCRIV 410

Query: 421 G-CVDVEQLLDIIFSKFCIGK 440
           G   D  + ++ +F  FCIGK
Sbjct: 411 GLQQDSFEKINYLFDNFCIGK 431


>gi|251772739|gb|EES53301.1| tRNA modification GTPase TrmE [Leptospirillum ferrodiazotrophum]
          Length = 441

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 130/442 (29%), Positives = 217/442 (49%), Gaps = 9/442 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGRILDKG 64
           ++I A  T  +P  + I+RLSG + +Q  + +      P PRKA+L       G+ +D  
Sbjct: 2   DSIVAPVTALVPQPVGILRLSGLNLWQQIQPLFPGLPCPAPRKATLLTLK-RQGQAIDSV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P SFTGED  E   HG    +  IL  + +   +R A PGEFS RA++NGKI 
Sbjct: 61  LVLFFPGPHSFTGEDVVEIQAHGNPQNIRSILHSI-EECGIRQAKPGEFSLRAYKNGKIS 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE-ED 183
           LL+AESL  +I++ T      +    S   +       +    + +   A LD+ EE  D
Sbjct: 120 LLKAESLHRMITAPTYGDFLSAHSSFSRPENHPLATIKEAFLDLLASFYAFLDYPEELTD 179

Query: 184 VQNFSSKEVLNDILFLKNDISSH-ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            ++  S  +L   +     +S H +S  +    + + + +++ G  N+GKSSLFN L + 
Sbjct: 180 SEHSYSHSLLFPKILTLQHLSRHQLSLFRKNRRVFSSFSVLLAGPPNSGKSSLFNRLLQS 239

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADL 301
           D AIV+  PGTTRD+L   L L    + + D+AG R +  D++E  GI +    + + D 
Sbjct: 240 DRAIVSPYPGTTRDLLEGRLSLPFGDLLLLDSAGFRSSSNDLIEGMGISKARKTIAHVDR 299

Query: 302 ILLLKEINSKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISSFTGEGLEELINKIKS 360
           +L +    +   + F     +  I  K DL         D ++S+ T +GL +L++ + S
Sbjct: 300 LLWVTSPETLAPLPFSTRTPYFTIWNKVDLSPPPPILPPDFVVSARTRKGLRQLLDALVS 359

Query: 361 ILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           +  + +     S  +   +R    LS  ++ +  A  + +    D+   +L  A   L  
Sbjct: 360 LAEDFYSHHNNSTPLLDSERQAQALSSFLKAITRAEDSLRSNAFDLALTSLEEARNLLED 419

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
            TG +  E++ D +FS+FC+GK
Sbjct: 420 GTGMISTEEIYDRVFSRFCLGK 441


>gi|308273513|emb|CBX30115.1| tRNA modification GTPase mnmE [uncultured Desulfobacterium sp.]
          Length = 460

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 137/472 (29%), Positives = 219/472 (46%), Gaps = 48/472 (10%)

Query: 4   EKETIFAVSTGALPSAISIIRLSG----------PSCFQVCEFICKKKKP-------FPR 46
           +K+TI A+ST                             +   I +K K           
Sbjct: 2   DKDTIAAISTPVGS----------GGIGIIKISGDKAKHITSLIFRKSKKNEVNYFKESH 51

Query: 47  KASLRYFFGLD-GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL 105
           K    +    D  +ILD+ L+ V  +P S+TGED  E +VH G  ++  IL  + +    
Sbjct: 52  KLYHGHIIDPDSNQILDEVLVSVMLAPHSYTGEDVIEINVHSGTFILKTILNIIIRKD-A 110

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           RLA PGEF++RAF NG+IDL +AE++ D+I+S +     ++   + G L +     +  L
Sbjct: 111 RLAEPGEFTKRAFLNGRIDLTQAEAIIDIINSNSLKALEIANAQVDGVLRNEIESMLTVL 170

Query: 166 THIRSFIEADLDFS-EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
             I   IEA +DF  E E++       VL + + +K  ++  IS    G +IR G K+VI
Sbjct: 171 NDIIVKIEAVIDFPDETENINIDEYISVLENSIIIK--LNKLISDYNEGHVIREGLKVVI 228

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
            G  N GKSSL N L KK+ +IVT IPGTTRD++   + + G    I DTAG   T D V
Sbjct: 229 AGRPNVGKSSLMNVLLKKERSIVTSIPGTTRDIIDETIIISGIPAVIFDTAGFHNTVDPV 288

Query: 285 EKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338
           E+ GI++    + N+D+IL + ++      + +  +   K+ + I +  K DL +  +  
Sbjct: 289 EEIGIQKALEIINNSDIILFMLDVINPFTEDDRTLLEIVKDKELIVVLNKIDLLNENSLI 348

Query: 339 ---------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                        +SS    G++ L   IK I +         I  + R    +   ++ 
Sbjct: 349 EINKELKCFPIVRVSSLCNTGIDVLKETIKEITTKSVHSDCSCIVPNLRQKTAIENCLKN 408

Query: 390 LE-MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++   +  +     + I+ ++  A   L +I G      +LD IF+KFCIGK
Sbjct: 409 MKSFLNGIKAGLPYEFISLDIHEAITELSQIVGIKIKLNILDQIFNKFCIGK 460


>gi|84514918|ref|ZP_01002281.1| tRNA modification GTPase [Loktanella vestfoldensis SKA53]
 gi|84511077|gb|EAQ07531.1| tRNA modification GTPase [Loktanella vestfoldensis SKA53]
          Length = 393

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 147/398 (36%), Positives = 226/398 (56%), Gaps = 11/398 (2%)

Query: 45  PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN 104
           P    LR      G ++D+ L++ F   +SFTGED  E H+HG  AVV+ +L  L   P 
Sbjct: 5   PVARGLRALRDRAGDLVDEALVLRFADGKSFTGEDVVELHLHGSPAVVSAVLRILGDDPA 64

Query: 105 LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK 164
           +R A  GEF+RRA  NG++DL + E LADLI +ETE QRR ++   SG L  +   W  +
Sbjct: 65  MRPAEAGEFTRRALTNGRLDLAQVEGLADLIDAETESQRRQAVRVFSGALGEIADSWRKR 124

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L    + +EA +DF +E+ V      EV + +  ++++++   +  ++ E +R+G+++ I
Sbjct: 125 LIRAAALLEATIDFVDED-VPVDVVPEVRDLLQAVRSEMAREAAGVRMAERLRDGFEVAI 183

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L N LA++DVAI ++I GTTRDV+ + LDL+G  V + DTAG+R+TDD+V
Sbjct: 184 VGAPNVGKSTLMNRLARRDVAITSEIAGTTRDVIEVRLDLDGIPVTLLDTAGLRDTDDLV 243

Query: 285 EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
           E  G+ R     E AD+ + +  +++          D   +  K+D            +S
Sbjct: 244 ESLGVARARARAEQADMRVHML-LDAPVPSHDLAAGDIY-VRAKAD----TGAGGGLAVS 297

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGL 402
             +G G+E LI  I   L  +   +   +   +RH   L + V  L+ A   L+ +D  L
Sbjct: 298 GLSGMGVEALIALISGELGRRVASV--GLAMRERHRVALLRAVTSLDDAGAWLDAEDGML 355

Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           D+IAE+LR A  ++  + G VDVEQ+LD IFS FCIGK
Sbjct: 356 DLIAEDLRTAIRAVDSLVGRVDVEQVLDEIFSSFCIGK 393


>gi|108760478|ref|YP_635609.1| tRNA modification GTPase TrmE [Myxococcus xanthus DK 1622]
 gi|123073862|sp|Q1CVG4|MNME_MYXXD RecName: Full=tRNA modification GTPase mnmE
 gi|108464358|gb|ABF89543.1| tRNA modification GTPase TrmE [Myxococcus xanthus DK 1622]
          Length = 442

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 138/428 (32%), Positives = 224/428 (52%), Gaps = 12/428 (2%)

Query: 20  ISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77
           + I+RLSGP    V   +      +P PR A L  F   +GR LD+GL + F  P+SFTG
Sbjct: 20  VGILRLSGPEALDVGRLLAPGVPAQPTPRHAYLASFVDAEGRSLDEGLFLYFRGPQSFTG 79

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E   HG   ++  +L    +   +R A PGEF+RRAF NG++DL  AE++ADL+++
Sbjct: 80  EDVVELQAHGSPRLLRLLLTRALEDARVRHAAPGEFTRRAFLNGRLDLTRAEAVADLVAA 139

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           ++E   R +  G+SG L+S      + L  + + +E  L F    D    + ++V   + 
Sbjct: 140 DSEAAVRAAAAGLSGALASRVQALEEPLRALHADMEGVLSFP---DEAEGADEDVGERVT 196

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L+    + +++   G ++R G ++ + G  NAGKS+LFN L  +  A+V D PGTTRD 
Sbjct: 197 ALRAQAETLLAEVGRGRLVRRGARVALFGPVNAGKSTLFNRLVGEARALVDDEPGTTRDA 256

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE--INSKKEIS 315
           L   ++ +G  V + DTAG+RET   VE  GI RT   +   DL +L+    +   +  +
Sbjct: 257 LEARVEWDGLAVTLFDTAGLRETPGRVEALGIARTRALLTGVDLAVLVLPPGVTQAEVEA 316

Query: 316 FPKN---IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           + ++      + +  K D+ +  +      +S  TGEG++ L + +   L         +
Sbjct: 317 WTRDVGGTPVLVVDGKCDV-AEVSSSPRQRVSGLTGEGVDALRDDMLGRLWGGGTPSAVA 375

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432
           + S +RH   L +    L  A    +   L++++  + LA  +LG+++G V  E LLD I
Sbjct: 376 LVS-ERHADALRRASEALGRAESASRVSTLEVVSGEVGLALEALGEVSGTVVSEALLDAI 434

Query: 433 FSKFCIGK 440
           F +FCIGK
Sbjct: 435 FQRFCIGK 442


>gi|83950775|ref|ZP_00959508.1| tRNA modification GTPase [Roseovarius nubinhibens ISM]
 gi|83838674|gb|EAP77970.1| tRNA modification GTPase [Roseovarius nubinhibens ISM]
          Length = 391

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 149/400 (37%), Positives = 221/400 (55%), Gaps = 12/400 (3%)

Query: 43  PFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102
           P  R  S+R     D  +LD+ L++ F +  SFTGE++ EF VHG +A++  +L  L +M
Sbjct: 2   PARRVGSVRLLRQGD-EVLDEALILTFDAGHSFTGEETVEFQVHGSVAIIGALLARLGEM 60

Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162
           P LR A PGEF+RRA EN ++DL + E LADL+ SETE QRR +M+  SG L      W 
Sbjct: 61  PGLRQAEPGEFTRRALENERLDLAQIEGLADLLESETEAQRRQAMKMFSGALGQKAEGWR 120

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
            KL    + +E  +DF++ E+V      EV+  +  +  ++   I+     E IR G+++
Sbjct: 121 GKLIRAMALLEVTIDFAD-EEVPEDVYPEVIAVLDGVMAELRVEITGVAAAERIRTGFEV 179

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  N GKS+L N LA +D AI +D+ GTTRDV+ + +D+ G  V   DTAG+RET+D
Sbjct: 180 AIVGAPNVGKSTLLNGLAGRDAAITSDVAGTTRDVIEVRMDVAGLPVTFLDTAGLRETED 239

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
           +VE  GI R       ADL + L + +  +     +  D   +  K+D+           
Sbjct: 240 VVESVGIARAKERAAQADLRVFLLD-DPSQGAELAEEGDI-LLQAKADVAGGSFPGV--- 294

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCG 401
            S  TG G+ ELI  I   LS++       + +H RH   L +    LE A  L  ++  
Sbjct: 295 -SGKTGAGIAELITAISERLSSRVAH--AGVATHLRHKRALQEGCDALEQARDLMLQNVE 351

Query: 402 L-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +I+AE +R A  +L  + G VDVE +LD +FS FC+GK
Sbjct: 352 MSEIVAEEIRRAVYALDSLVGRVDVEAILDEVFSSFCLGK 391


>gi|239993743|ref|ZP_04714267.1| tRNA modification GTPase [Alteromonas macleodii ATCC 27126]
          Length = 367

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 193/369 (52%), Gaps = 24/369 (6%)

Query: 94  GILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGE 153
            +++ +    + RLANPGEFS +AF N K+DL +AE++ADLI + ++   + ++  + GE
Sbjct: 1   MLIDAVLATGDARLANPGEFSEQAFLNDKLDLAQAEAIADLIDASSKQAAKSALRSLQGE 60

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213
            S+      D++ H+R ++EA +DF E E++   S  +V  D+  +   ++    Q K G
Sbjct: 61  FSTQIQTLSDQIVHLRMYVEAAIDFPE-EEIDFLSDGKVSGDLSAIMQSLTKVREQAKQG 119

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
            ++R G ++VI G  NAGKSSL NALA +D AIVTDI GTTRDVL   + ++G  V I D
Sbjct: 120 TLLREGMQVVIAGRPNAGKSSLLNALAGRDSAIVTDIAGTTRDVLKEHIHIDGMPVHIID 179

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNIDF 322
           TAG+RE+ D VE+ GI+R +  +  AD +L + +  +   I             P+ I  
Sbjct: 180 TAGLRESPDKVEQIGIERAWQAINEADHVLFVVDSTATAVIDPYEIWPEFMARLPQGIPV 239

Query: 323 IFIGTKSDL----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +  K+DL           +   +     +S+  G G++ L   +   +          
Sbjct: 240 TVVRNKADLSTLDIGQSTVATEQGDISVINLSAKEGSGVDTLKAHLAKTMGFD-TTTEGQ 298

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
             + +RH+  L Q   Y+        D    +++AE LRLA  +L +ITG    + LL  
Sbjct: 299 FIARRRHIDALDQAYSYVSTGEQQLHDAMAGELLAEELRLAHQALCEITGEFTSDDLLGK 358

Query: 432 IFSKFCIGK 440
           IFS FCIGK
Sbjct: 359 IFSSFCIGK 367


>gi|310825624|ref|YP_003957982.1| tRNA modification GTPase mnme [Stigmatella aurantiaca DW4/3-1]
 gi|309398696|gb|ADO76155.1| tRNA modification GTPase MnmE [Stigmatella aurantiaca DW4/3-1]
          Length = 427

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 139/430 (32%), Positives = 219/430 (50%), Gaps = 14/430 (3%)

Query: 21  SIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
            I+RLSGP+  +V   +     + P PR A L  F    G  LD+GL + F +P SFTGE
Sbjct: 2   GILRLSGPAALEVGRRLAPGIPEAPVPRHAYLASFVDAQGLTLDEGLFLYFRAPHSFTGE 61

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
           D  E   HG   ++  +L  + +   +R A PGEF+RRAF  G+IDL  AE++ADL++++
Sbjct: 62  DVVELQAHGSPRLLQLLLARVLEDERVRPARPGEFTRRAFLQGRIDLTRAEAVADLVAAD 121

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +E   R +  G++G LS       + L  + + +E  L+F    D    + +     +  
Sbjct: 122 SEAAVRAAAAGLAGALSHRVRALEEPLRALHADLEGVLNFP---DEAEGADEGAGPRVAA 178

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L+++  + +S+   G ++R G ++ + G  NAGKS+LFN L  +  A+V   PGTTRDVL
Sbjct: 179 LRSEAEALLSEAGRGRLVRRGARVALYGPVNAGKSTLFNRLVGEARALVDAEPGTTRDVL 238

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-----KEINSKKE 313
              ++  G  + + DTAG+RET   +E  GI RT   + + DL LL+         ++  
Sbjct: 239 EARVEWNGLALSLLDTAGLRETPGRLEALGIARTRQTLASVDLALLVLPPEALPAEAEGW 298

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTE---EYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                    + +  K D+  +      E    +S  TGEGLE L   I S L  +     
Sbjct: 299 AHEAGATAVLRVAGKCDVAPSLPSPAWERGLRVSGRTGEGLEPLRAAILSHLWGEGTPAA 358

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
            ++ S +RH   L +    L  A    +   L++++  + LA  +LG+++G    E LLD
Sbjct: 359 VALVS-ERHADALRRAAEALGRAHEASRLSTLEVLSGEVGLALEALGEVSGTSASEALLD 417

Query: 431 IIFSKFCIGK 440
            IF +FCIGK
Sbjct: 418 AIFQRFCIGK 427


>gi|213650174|ref|ZP_03380227.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 279

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 111/282 (39%), Positives = 172/282 (60%), Gaps = 3/282 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+ +D
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAND 279


>gi|225575683|ref|ZP_03784293.1| hypothetical protein RUMHYD_03776 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037100|gb|EEG47346.1| hypothetical protein RUMHYD_03776 [Blautia hydrogenotrophica DSM
           10507]
          Length = 364

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 118/336 (35%), Positives = 184/336 (54%), Gaps = 14/336 (4%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGL---DGRI 60
           TI A+ST    S I I+R+SG     V + I +    KK   +  S    +G    +  +
Sbjct: 4   TIAAISTAMSASGIGIVRISGEHSVDVIKKIYRSKNGKKQLDQVPSHTIHYGYIYDEEEM 63

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D+ L++V  +P ++TGED+ E   HGG+  +  +L+ + K    + A PGEF++RAF N
Sbjct: 64  IDEVLVMVMRAPRTYTGEDTVEIDCHGGVCAMRRVLDTVLK-HGAKTAEPGEFTKRAFLN 122

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ D+I+S+ E   + SM  + G +     +    L +  ++IE+ LD  E
Sbjct: 123 GKLDLSQAEAVIDVINSKNEFALKSSMSQLKGSVKREIEKIRSSLIYHIAYIESALDDPE 182

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              +  +  +  +      K  I   +S  + G++IR G + VILG  NAGKSSL N L 
Sbjct: 183 HISIDGYGEELKMTTTQE-KEKIYRLLSTVREGKMIREGIQTVILGKPNAGKSSLLNLLI 241

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            ++ AIVTDI GTTRDVL   + L G  +KI DTAGIR+T+D+VE+ G+ +     + AD
Sbjct: 242 GENKAIVTDIAGTTRDVLEECITLSGISLKIIDTAGIRDTEDLVEQIGVDKAKEMGKEAD 301

Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSD 330
           LIL + +       N +K I   +    I +  K+D
Sbjct: 302 LILYVVDSSVPLDENDEKIIEMMEGKQAIVLLNKTD 337


>gi|257457804|ref|ZP_05622965.1| tRNA modification GTPase TrmE [Treponema vincentii ATCC 35580]
 gi|257444854|gb|EEV19936.1| tRNA modification GTPase TrmE [Treponema vincentii ATCC 35580]
          Length = 459

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 127/441 (28%), Positives = 217/441 (49%), Gaps = 24/441 (5%)

Query: 21  SIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILDKGLLIVFPSPESFTG 77
            I+R SG    +       + +   +       +G    +G  +D+ +L V+ +P+S TG
Sbjct: 22  GIVRTSGKRSLEFISRFFSRPQALLQAKGHSLVYGWIHDEGVKIDEVVLCVYRAPKSNTG 81

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           E++ E   HGG  VV  +     K    R A  GEF+ R+F +GK DL  AE++ ++I S
Sbjct: 82  ENAVEIICHGGPGVVKTVYRLCIK-NGFRAAERGEFTFRSFIHGKADLTRAEAVREIIDS 140

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           +T   ++ +   +SG +          L    + +E  +++ E+E+    S  E L    
Sbjct: 141 KTHTAQKKAAGRLSGNVFREIESVKSDLITALAALEVGIEYPEDEETIADSFDETLLKKP 200

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
              + +       +  +I + G ++V+ G +NAGKSSLFNAL K+D AIV+DI GTTRD 
Sbjct: 201 --LSALQLLADSWQTEKIYQAGVRLVLAGKTNAGKSSLFNALLKEDRAIVSDIHGTTRDW 258

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI 314
           L  +LD +G    I DTAG+R T+D +E  G++R+      AD++L L +     ++++I
Sbjct: 259 LEAELDFKGIPAHIFDTAGLRATEDAIEAIGVRRSVELASAADIVLYLIDGTKPPAEEDI 318

Query: 315 SFPKNI--DFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           +F +      I + TK+D         L +         +SS TG G++ LI+ +  +++
Sbjct: 319 AFIRENTVPLIIVQTKADKTGKVEPEVLPAALQRYPAVSLSSKTGAGIDRLIDTVVDLVT 378

Query: 364 NKFK-KLPFSIPS--HKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKI 419
                 +P    S   +R    ++  +  +  A         LD + +++  A  +LG +
Sbjct: 379 ADTALPMPDGNVSLGTERQKEAVTAALEAVRYALEAGRSGYPLDAVIQDIEDAVHALGSV 438

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG V  + +LD IFS FC+GK
Sbjct: 439 TGEVRSDDILDKIFSGFCVGK 459


>gi|94987514|ref|YP_595447.1| tRNA modification GTPase TrmE [Lawsonia intracellularis PHE/MN1-00]
 gi|205415772|sp|Q1MPF1|MNME_LAWIP RecName: Full=tRNA modification GTPase mnmE
 gi|94731763|emb|CAJ55126.1| predicted GTPase [Lawsonia intracellularis PHE/MN1-00]
          Length = 459

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 135/469 (28%), Positives = 219/469 (46%), Gaps = 46/469 (9%)

Query: 6   ETIFAVSTGALPSAISIIRLSG----------PSCFQVCEFICKKKKPF-----PRKASL 50
           +TI A++T +                      P   +    +     P      P     
Sbjct: 3   DTIAAIATPSGT----------GGIGIIRISGPKSKERLTELFHSVSPKFTDFKPWMLHR 52

Query: 51  RYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANP 110
            Y        LD  L +  P+P +FTGED  E H HGG  ++  ILE +    N+RLA P
Sbjct: 53  GYLVAPTNEFLDDILAVYMPAPYTFTGEDVVELHCHGGHFLLLTILETVL-CKNIRLAKP 111

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           GEFS+RAF NG++DL +AE++A+LI++ +  +  L+   + G L         ++  +R 
Sbjct: 112 GEFSQRAFLNGRMDLTQAEAVAELIAASSRNEVLLASNRLKGLLGQKIIDIRRRIEELRV 171

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           +I   +DF EEE    F  ++ +N +L +   I   I   +     + G  + + G  NA
Sbjct: 172 WICLAVDFPEEES-GIFPLEKFINGLLEIHEIIQKLIHAAERSRCWKEGVTVALAGAVNA 230

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSL NAL  K+ AIVT+ PGTTRD L   + +    +++ DTAG+R T D +E++GI+
Sbjct: 231 GKSSLLNALLGKERAIVTEHPGTTRDFLEECIIVNSLSIRLIDTAGLRVTSDPIEEQGIQ 290

Query: 291 RTFLEVENADLILLLKEIN---SKKEISFPKNIDF---IFIGTKSDLY---STYTEEY-- 339
           +   +++ AD+IL + +     +++      N      I +  K DL    S +TE Y  
Sbjct: 291 KGREKIDEADVILFIIDGTVGVTEESKLLINNFGVERTILVWNKVDLKVPPSNWTELYTS 350

Query: 340 ----DHLISSFTGEGLEELINKIKSILSNKFKKLP---FSIPSHKRHLYHLSQTVRYLE- 391
                  +S+ TG G+EEL+  + + + ++         +I  + R +   S  +  +  
Sbjct: 351 SQVSGICVSAKTGSGIEELLVLLYNFVLSQHNAQEPTFDTIVPNMRQVEVFSLVLEEIRS 410

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +          D+ A  L   S  L  I G    E++L+ IF+ FCIGK
Sbjct: 411 LYEDIRSGIPYDLCAVMLENISSMLNSIIGFDTPEEVLNRIFASFCIGK 459


>gi|149012956|ref|ZP_01833845.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP19-BS75]
 gi|147763109|gb|EDK70050.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP19-BS75]
          Length = 285

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 106/284 (37%), Positives = 171/284 (60%), Gaps = 7/284 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55
           +  E +TI A+ST     AI I+RLSG + F + + I K K    + AS    +G     
Sbjct: 2   ITREFDTIAAISTPLGEGAIGIVRLSGTNSFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           L G+++D+ ++    SP++FT ED  E + HGGIAV N IL+ LA     RLA PGEF++
Sbjct: 61  LTGKVMDEVMIGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +DV+  ++  V    +  +  +++ +   + G+I+R G    I+G  N GKSSL
Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            N L ++D AIVTDI GTTRDV+   +++ G  +K+ DTAGIRE
Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRE 283


>gi|156082555|ref|XP_001608762.1| tRNA modification GTPase TrmE  [Babesia bovis T2Bo]
 gi|154796011|gb|EDO05194.1| tRNA modification GTPase TrmE , putative [Babesia bovis]
          Length = 529

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 134/491 (27%), Positives = 241/491 (49%), Gaps = 54/491 (10%)

Query: 2   NHEKETIFAVSTGA--LPSAISIIRLSGPSCFQVCEFICKKK---------KPFPRKASL 50
             + +T++ +S+        I++ R++G    ++ + + K           +  PR A+L
Sbjct: 41  TTDGQTVYGLSSAVHEGGCGIAVTRITGKQSLELLQLLTKSTGTNASNNTFECEPRVATL 100

Query: 51  RYFFGLD-GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGI---LEELAKMPN-- 104
           R  +       +D+ + I FP+P SFTGED  E H HG  AV++ +   + EL+K     
Sbjct: 101 RVLYDKTHSAPIDRVITIYFPAPNSFTGEDVVEIHTHGSRAVISQLFATIRELSKEYGLK 160

Query: 105 LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK 164
           +R A  GEF+RRAF NGK+DL++AE++ D+I +ET+++   +   + G LS +Y  W D+
Sbjct: 161 VRQAERGEFTRRAFYNGKLDLIQAEAIRDVIRAETQIEVENAALKIYGRLSKIYHTWTDR 220

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L  I   +EA ++F+E+    +  +  +  ++  +   + +HI+     E++  G  + I
Sbjct: 221 LNQILGIVEAKIEFNEQAS-TDLQNTALARELNDIATQVRNHIND-NRAELVSMGATVAI 278

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR------ 278
           +G  NAGKSSL N +  ++VAIV D+PGTTRD +    DL G  + + DTAGIR      
Sbjct: 279 VGPPNAGKSSLINTICDRNVAIVADLPGTTRDPVHAKYDLNGIKITLVDTAGIRIVESET 338

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP---------KNIDFIFIGT 327
              +   VE +GI+     +++A ++L L + ++     +           +   I   +
Sbjct: 339 TENSHQKVEMQGIEMALEYIKDAKVVLFLYDHDNDDMSKYALTMTMNKMSTHSKLIVCIS 398

Query: 328 KSDLYSTYTEEYDHLI---------------SSFTGEGLEELINKIKSILSNKFKKL-PF 371
           K+DL      +                    S+     +++L++ ++     ++++    
Sbjct: 399 KTDLLENKKTQAIIRKLKKNYPLSNAEVIPLSTKIVNTVDDLLDHVQQTFEKEYQEARKQ 458

Query: 372 SIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLL 429
              +  R   HL   ++ +E  +  +   +  L+IIAEN+R A   +  I G    E+LL
Sbjct: 459 PFITDARQKNHLINVLKEIERTLEVIQSGNHELEIIAENIRAAISQIAYIVGEQTNEELL 518

Query: 430 DIIFSKFCIGK 440
           D IF  FC+GK
Sbjct: 519 DTIFRTFCVGK 529


>gi|157781567|gb|ABV72138.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           saccharolyticus]
          Length = 269

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 95/270 (35%), Positives = 157/270 (58%), Gaps = 6/270 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGL 65
           +ST     AISI+RLSG     + + + K  K     AS    +G        +++D+ +
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVTIADKVFKANKSLADVASHTINYGHLYDPQTEQLVDEVM 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           + V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG++DL
Sbjct: 61  VSVMRAPKTFTREDVIEINCHGGIVVVNQILQLLLR-QGARLAEPGEFTKRAFLNGRVDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ DLI ++T+    L++  + G LS L      ++    + +E ++D+ E +DV+
Sbjct: 120 SQAEAVMDLIRAKTDKAMNLALNQLDGNLSHLIRALRQEILETLAQVEVNIDYPEYDDVE 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +++ ++     ++  I + +   + G+I+R G    I+G  N GKSSL N L +++ A
Sbjct: 180 EMTTRLLVEKATQVQAQIQALLQTAQQGKILREGLNTAIIGRPNVGKSSLLNHLLREEKA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 IVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 269


>gi|311359265|gb|ADP94166.1| TrmE [Treponema pallidum subsp. pertenue]
 gi|311705156|gb|ADQ01045.1| TrmE [Treponema pallidum subsp. pertenue]
 gi|311705164|gb|ADQ01052.1| TrmE [Treponema pallidum subsp. pertenue str. Gauthier]
 gi|313505077|gb|ADR64245.1| TrmE [Treponema pallidum]
          Length = 495

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 130/490 (26%), Positives = 216/490 (44%), Gaps = 57/490 (11%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRI-L 61
            + I A++T   P+A+ I+R SG S  +       + +   R  +  +  G  LDG+  +
Sbjct: 9   DDDIVAIATALSPAALGIVRTSGSSSIERVASFFSRAQALTRARAHTFLHGWILDGKTRV 68

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ +L+V+ +P SFTGE + E   HGG+  V  +   L      R A  GEFS R+F +G
Sbjct: 69  DEVVLLVYRAPHSFTGEHAVEIICHGGVRTVQAVY-RLCLAQGFRAAQRGEFSFRSFFHG 127

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K DL   E++  L+ + T   ++ ++  +SG L          L    + ++ ++++ E 
Sbjct: 128 KRDLTRIEAIQSLVDARTCAAQQQAVLHLSGALQQEIAALTRALLAFSATLQGEIEYPE- 186

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D +       + ++  L   +    +  +   + R G +IV+ G  NAGKSSLFNAL  
Sbjct: 187 -DEETRVHDIDMRELEPLVERLRRLRACWQERALQRTGVRIVLGGCPNAGKSSLFNALLG 245

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIV+ +PGTTRD L  DLDL G  V++ DTAG+R TD+ +E +G+ R+   ++ AD 
Sbjct: 246 QDRAIVSSVPGTTRDWLEADLDLSGIPVRLCDTAGLRVTDNPIEAQGVVRSEQLLQGADC 305

Query: 302 ILLLKEINS---KKEISFPKNI--DFIFIGTKSDLYS----------------------- 333
           +  +    +     + +F  +     + + T +DL S                       
Sbjct: 306 VFYIINGRAGVQAADCAFLSDCAVPLVVVVTHNDLMSMSERTQVCQAVQPFISAPVLSCA 365

Query: 334 ----------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                                          +S+ T  GL+ L  +   +L         
Sbjct: 366 RSQDARGAGEQCLAGGKNGEVRDRAPRAFVCVSAKTHAGLDALRAQTLHLLHGGQVPYEE 425

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
                +R    +   V+ LE A     +  GLD +  +L  A    G +TG V  E +LD
Sbjct: 426 LSLGSERQYVLVDAAVQALEHAQEAYARGFGLDAVVHDLEEALYHCGALTGEVHSEDILD 485

Query: 431 IIFSKFCIGK 440
            +F K C+GK
Sbjct: 486 ALFEKLCVGK 495


>gi|160944275|ref|ZP_02091504.1| hypothetical protein FAEPRAM212_01784 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444457|gb|EDP21461.1| hypothetical protein FAEPRAM212_01784 [Faecalibacterium prausnitzii
           M21/2]
          Length = 456

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 126/447 (28%), Positives = 212/447 (47%), Gaps = 24/447 (5%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-------KASLRYFFGLDGRILDKGLLI 67
                I+++RLSG   +QV   +     P  +        A   +F   +    D+G+ +
Sbjct: 13  PGAGGIAVVRLSGAESYQVAARVFHPANPAKKVEEAKGYTALFGHFVDRE-EAFDEGVAL 71

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127
            F +P S+TGED  E   HGG AV   ++E          A PGE++RRAF NGK+ L +
Sbjct: 72  FFRAPHSYTGEDVVELSCHGGNAVARRLVEACLAAGAQ-PAAPGEYTRRAFLNGKLGLTQ 130

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           AE++ DLIS++      L+   + G L+        +LT +++ + A +DF E EDV   
Sbjct: 131 AEAVMDLISADGRQGAALANAALGGALAKKINAQKAQLTALQAHLAAWVDFPE-EDVPEL 189

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
               +   +  ++ ++ + I     G ++R G    I+G  NAGKS+L N LA  D AIV
Sbjct: 190 DPAHLRTVLGAVREELDALIRGYDAGAVLREGVDCAIVGRPNAGKSTLLNLLAGFDRAIV 249

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           T + GTTRDV+   + L    + + DTAG+RET+D +E EGI+R++ ++E A LIL + +
Sbjct: 250 TPVAGTTRDVVEQAVQLGDIRLNLFDTAGLRETEDAIEAEGIRRSWKKLEEAGLILAVFD 309

Query: 308 IN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELI 355
            +   S+++++  +       I +  K D  + +  E                EG  ++I
Sbjct: 310 GSEPPSREDLALAQRCAGRPAIALVNKEDKPTRFDAELIAPYFAMVLPVCCREEGSRKVI 369

Query: 356 -NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR-YLEMASLNEKDCGLDIIAENLRLAS 413
              +  +L         +  S +R L    +                GLD ++  +  A 
Sbjct: 370 AAAVARLLGTGSIDPHAASLSGQRQLSAALRARDAVAGALDAAAGGFGLDAVSVCVDDAL 429

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +L  +TG    E +++ +F +FC+GK
Sbjct: 430 DALCDLTGENASEAVIEQVFERFCVGK 456


>gi|15639539|ref|NP_218989.1| tRNA modification GTPase TrmE [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025778|ref|YP_001933550.1| tRNA modification GTPase TrmE [Treponema pallidum subsp. pallidum
           SS14]
 gi|6647879|sp|O83561|MNME_TREPA RecName: Full=tRNA modification GTPase mnmE
 gi|226704786|sp|B2S3E2|MNME_TREPS RecName: Full=tRNA modification GTPase mnmE
 gi|3322842|gb|AAC65535.1| thiophene and furan oxidation protein (thdF) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018353|gb|ACD70971.1| thiophene and furan oxidation protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059927|gb|ADD72662.1| tRNA modification GTPase TrmE [Treponema pallidum subsp. pallidum
           str. Chicago]
 gi|313505085|gb|ADR64252.1| TrmE [Treponema pallidum subsp. pallidum str. Mexico A]
 gi|313505093|gb|ADR64259.1| TrmE [Treponema pallidum subsp. pallidum]
          Length = 495

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 130/490 (26%), Positives = 216/490 (44%), Gaps = 57/490 (11%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRI-L 61
            + I A++T   P+A+ I+R SG S  +       + +   R  +  +  G  LDG+  +
Sbjct: 9   DDDIVAIATALSPAALGIVRTSGSSSIERVASFFSRAQALTRARAHTFLHGWILDGKTRV 68

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ +L+V+ +P SFTGE + E   HGG+  V  +   L      R A  GEFS R+F +G
Sbjct: 69  DEVVLLVYRAPHSFTGEHAVEIICHGGVRTVQAVY-RLCLAQGFRAAQRGEFSFRSFFHG 127

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K DL   E++  L+ + T   ++ ++  +SG L          L    + ++ ++++ E 
Sbjct: 128 KRDLTRIEAIQSLVDARTCAAQQQAVLHLSGALQQEIAALTRALLAFSATLQGEIEYPE- 186

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D +       + ++  L   +    +  +   + R G +IV+ G  NAGKSSLFNAL  
Sbjct: 187 -DEETRVHDIDMRELEPLVERLRRLRACWQERALQRTGVRIVLGGCPNAGKSSLFNALLG 245

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIV+ +PGTTRD L  DLDL G  V++ DTAG+R TD+ +E +G+ R+   ++ AD 
Sbjct: 246 QDRAIVSSVPGTTRDWLEADLDLSGIPVRLCDTAGLRVTDNPIEAQGVVRSEQLLQGADC 305

Query: 302 ILLLKEINS---KKEISFPKNI--DFIFIGTKSDLYS----------------------- 333
           +  +    +     + +F  +     + + T +DL S                       
Sbjct: 306 VFYIINGRAGVQAADCAFLSDCAVPLVVVVTHNDLMSMSERIQVCQAVQPFISAPVLSCA 365

Query: 334 ----------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                                          +S+ T  GL+ L  +   +L         
Sbjct: 366 RSQDARGAGEQCLAGGKNGEVRDRAPRAFVCVSAKTHAGLDALRAQTLHLLHGGQVPYEE 425

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
                +R    +   V+ LE A     +  GLD +  +L  A    G +TG V  E +LD
Sbjct: 426 LSLGSERQYVLVDAAVQALEHAQEAYARGFGLDAVVHDLEEALYHCGALTGEVHSEDILD 485

Query: 431 IIFSKFCIGK 440
            +F K C+GK
Sbjct: 486 ALFEKLCVGK 495


>gi|241781518|ref|XP_002400281.1| GTPase mss1/trme, putative [Ixodes scapularis]
 gi|215510712|gb|EEC20165.1| GTPase mss1/trme, putative [Ixodes scapularis]
          Length = 382

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 157/382 (41%), Positives = 219/382 (57%), Gaps = 30/382 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDKGL 65
           TI+A+S+GA+ SA++ IR+SGP+   V   + + K+  PRKA LR       G  LD  +
Sbjct: 1   TIYALSSGAVRSALATIRVSGPNTASVLRRMARIKRAAPRKALLRRLIHPESGVHLDTAI 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR---AFENGK 122
           +I FPSP S+TGED  E HVHGG AVVNG+L+ L++M +LR A PGEF++R   AF NGK
Sbjct: 61  VIWFPSPRSYTGEDCCELHVHGGAAVVNGVLKALSEMEDLRQAQPGEFTQRQVSAFLNGK 120

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL E E LADL+ +ETE QR  ++  M G+LS LY  W+D L    + IEA +DFSE++
Sbjct: 121 MDLAEVEGLADLLQAETEAQRMQALAQMEGDLSKLYRGWMDNLKKCLANIEAFIDFSEDQ 180

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            +              L  +I  H+S G+ GE +R G K+ I+G +N GKSSLFNAL ++
Sbjct: 181 GIDEAILGSAAAQAKRLAKEIQDHLSDGRRGERLRGGVKVAIVGRTNVGKSSLFNALCRR 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D AIV+ I GTTRDV+   LD+ GY     DTAG+R ++D VE EG+ R       ADL 
Sbjct: 241 DAAIVSPIAGTTRDVVESPLDIGGYPAVFCDTAGLRTSEDPVETEGVLRARRWASAADLA 300

Query: 303 LLLKE---------INSKKEISF------PKNIDFIFIGTKSDLYSTYTE---------- 337
           L++ +          +S  E         P     +F+  K+DL S              
Sbjct: 301 LVVADCRELLCADGADSSVEAHLDQLGVEPCPGGLLFVLNKTDLLSQEDRALLRERLAGG 360

Query: 338 EYDH-LISSFTGEGLEELINKI 358
           E+D    S  T EG+ +L+ ++
Sbjct: 361 EHDCVFTSCATHEGIADLVARL 382


>gi|157781563|gb|ABV72136.1| GTP-binding thiophene and furan oxidation protein [Tetragenococcus
           solitarius]
          Length = 269

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 98/270 (36%), Positives = 158/270 (58%), Gaps = 6/270 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGL 65
           +ST     AISI+RLSG       + + K K+   +  S    +G         +LD+ +
Sbjct: 1   ISTPPGEGAISIVRLSGEEAIPAADRVFKAKRSLEQAQSHTIHYGHIVDPKTNELLDEVM 60

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           + +  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG+IDL
Sbjct: 61  VSIMRAPKTFTREDIVEINCHGGIVVVNQILQLLLRS-GARLAEPGEFTKRAFLNGRIDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ DLI ++T+    +++  + G LS L      ++ +  + +E ++D+ E +DV+
Sbjct: 120 SQAEAVMDLIRAKTDKAMNVALNQLDGNLSHLIRSLRQEVLNTLAQVEVNIDYPEYDDVE 179

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +SK +L     +K  I S ++  + G+I+R G    I+G  N GKSSL N L K++ A
Sbjct: 180 EMTSKLLLEKATQVKQQIQSLLATAQQGKILREGLNTAIIGRPNVGKSSLLNQLLKEEKA 239

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IVT++ GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 IVTEVAGTTRDVVEEYVNVRGVPLKLIDTA 269


>gi|331239929|ref|XP_003332616.1| tRNA modification GTPase GTPBP3 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309311606|gb|EFP88197.1| tRNA modification GTPase GTPBP3 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 534

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 147/514 (28%), Positives = 240/514 (46%), Gaps = 78/514 (15%)

Query: 3   HEKETIFAVSTGAL-PSAISIIRLSGPSCFQVCEFICKK----------KKPFPRKASLR 51
              +TI+  +T     +A++IIR+ GP   Q+C  I +             P PRKA+LR
Sbjct: 23  SHSDTIYGPATPVGLKAALAIIRIDGPQAIQLCRSITRPLNPSIPHSHLPPPAPRKATLR 82

Query: 52  YFF-GLDGRILD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109
                +  +++D + LL+ F  P+      + EFH+HG  AV   +L  L+++  LRLA 
Sbjct: 83  KLVCPITQKVIDPEALLLRFDHPKH--AASTIEFHLHGSPAVSKSLLSTLSQLDYLRLAQ 140

Query: 110 PGEFSRRAFE--NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           PGEF+RR F+  +G +D+ +   L  LI +ETE QRR ++     +    Y Q   KL  
Sbjct: 141 PGEFTRRRFDRAHGSMDINKVLGLKHLIEAETEEQRRWAVSEFDSKFDHTYQQMRKKLKQ 200

Query: 168 IRSFIEADLDFSEEEDVQN-FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
             +  EA +DFSE+  + +     +V++ +L L++ I++ +SQ K  E I  G K+ + G
Sbjct: 201 SMALCEAIIDFSEDGSMDDREIWNQVIDHLLDLQSTINAQLSQSKRREKISMGIKVSLYG 260

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N GKS+L N L  ++ AIV+  PGTTRD++ + +D  G+ + +SDTAG+R + D VE+
Sbjct: 261 SPNVGKSTLLNYLVNREAAIVSPYPGTTRDIIELSIDYHGFPIILSDTAGLRSSTDPVEE 320

Query: 287 EGIKRTFLEVENADLILLLKEI------NSKKEI---SFPKNIDFIFIGTKSDLYSTYTE 337
            GI R    +  AD+ LLL         +S+  I       N   + + TK+DL     E
Sbjct: 321 IGINRAKENIGKADVRLLLVSAVDMDSFDSQDSILKQEVQDNRPTMILVTKTDLLIDSPE 380

Query: 338 EYD---------------HLISSFTG-------EGLEELINKIKSILSNKFKKLPFSIPS 375
           + +               H IS F         + ++   N ++S   ++  +   S   
Sbjct: 381 QIEGIVKKLDHHFPGVPVHPISVFDQIDQHGMSQFIKSFENHLRSSYGSEASENQNSFYL 440

Query: 376 HKRHLYHLSQTVRYLEMA--------------SLNEKDCGLDIIAENLRLASVSLGKIT- 420
                  L + + ++E                +   +D  L I+ E LRL S  L K++ 
Sbjct: 441 TNYQKIQLEKILSHIEGFISRLRSHLSGREDDNQQLEDLDLVILIEELRLVSGLLAKLSF 500

Query: 421 --------------GCVDVEQLLDIIFSKFCIGK 440
                           +  +++L  IF  FCIGK
Sbjct: 501 TNLPPSQLDHHHPAHEISTDEILGEIFQSFCIGK 534


>gi|157781591|gb|ABV72150.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           faecium]
          Length = 270

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 96/271 (35%), Positives = 158/271 (58%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG    Q+ + +     K      S    +G        +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSHTIHYGHIVDPKSNQLVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781615|gb|ABV72162.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           columbae]
          Length = 270

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/271 (36%), Positives = 160/271 (59%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFGLD---GRILDKG 64
           +ST     AISI+RLSG     + + +    KK+       +L Y    D    ++LD+ 
Sbjct: 1   ISTAPGEGAISIVRLSGSEALAIADQVFVAGKKQLSAVESHTLHYGHIHDKERNQVLDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGG+ V N IL+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVAVMRAPKTFTREDVVEINCHGGMVVTNKILQLLLR-KGARLAEPGEFTKRAFLNGRMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+   +L+M  + G LS L  +   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIHAKTDKAMQLAMNQLDGRLSQLIRKLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +S+ +  +   ++ +I   +S    G+I+R+G K  I+G  N GKSSL N L  ++ 
Sbjct: 180 EEMTSQLMFANAKQVEAEIIRLLSTANQGKILRDGLKTAIIGRPNVGKSSLLNYLLDEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVNGVPLKLVDTA 270


>gi|254797067|ref|YP_003081905.1| tRNA modification GTPase TrmE [Neorickettsia risticii str.
           Illinois]
 gi|254590313|gb|ACT69675.1| tRNA modification GTPase TrmE [Neorickettsia risticii str.
           Illinois]
          Length = 550

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 132/305 (43%), Positives = 196/305 (64%), Gaps = 5/305 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFI-CKKKKPFPRKASLRYFFGLDGRILDKGL 65
           TI+A+ST    S +++ R+SGP   Q  + +    K+P PR A     F  +  ++D+ L
Sbjct: 3   TIYALSTVFGKSGVAVFRISGPDALQALKVLGLDIKRPRPRFAYFTRLFD-EQLLIDEVL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           +I F SP SFTGED  E H HG IAV+  I E+L+ +   + A PGEF+RRA  N ++DL
Sbjct: 62  VIYFASPASFTGEDVVEVHSHGSIAVLRYISEKLSTL--FKPAEPGEFTRRAVLNNRMDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE + D+I++ET  Q + +   +SG+L+  Y     K+  + S++EA +DF + E++ 
Sbjct: 120 TKAEGIIDIINAETREQLKQASRHLSGKLAEGYHSLRSKIIKVLSYLEAYIDFPD-EEIP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                E+   IL ++ DIS +++ GK+GE IR G+ +VI+G  NAGKS+LFN LAK+D+A
Sbjct: 179 ETVLVEIQQSILAIQRDISHYLADGKVGEKIREGFSVVIVGKPNAGKSTLFNYLAKRDLA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDIPGTTRD+L + LD  GY + +SDTAGI+ET D +EK GI R   +   AD+I+ L
Sbjct: 239 IVTDIPGTTRDILEVRLDCHGYPLILSDTAGIQETCDAIEKMGIARALKKATEADVIVFL 298

Query: 306 KEINS 310
           ++I  
Sbjct: 299 RDITE 303



 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 9/124 (7%)

Query: 321 DFIFIGTKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             + + TK+D+     S + ++    +S + GEG++ L++KI  I+      +   I + 
Sbjct: 432 PVVKVVTKADIAPTQLSFWQDKGYICVSVYEGEGMQLLLDKIFDII--SSSNIEAHIITR 489

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436
            RH   L   + +L   +    D  +++ AE ++LA+  +  +TG + ++ +LD IFS F
Sbjct: 490 ARHRLALENALEHLGRFNT---DLPIELAAEEIKLAANHVASVTGEIKLDDILDEIFSSF 546

Query: 437 CIGK 440
           CIGK
Sbjct: 547 CIGK 550


>gi|295320975|gb|ADG01353.1| tRNA modification GTPase TrmE [Clostridium botulinum F str. 230613]
          Length = 301

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 117/300 (39%), Positives = 179/300 (59%), Gaps = 9/300 (3%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDG 58
            E +TI AV+T      ISIIR+SG     +   I K K        +  S+RY F ++ 
Sbjct: 2   KEFDTIAAVATPVGEGGISIIRISGDKSLDIVSSIFKGKNDRTLDDIKPYSMRYGFIIEK 61

Query: 59  R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
               ++D+ L+     P SFT ED+ E + HGG+     IL+EL K    RLA PGEF++
Sbjct: 62  ESKEMIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIKS-GARLAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG+IDL +AE++ D+I S+T++  + +++   G LS       +++  I + IEA 
Sbjct: 121 RAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKIIAHIEAT 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           +D+ E +D++  + +++  D+  + N I + IS  + G+I+R G   VI+G  N GKSSL
Sbjct: 181 VDYPE-DDLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVGKSSL 239

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  ++ AIVT+IPGTTRDV+   ++++G   KI DTAGIRET+D+VEK   ++   E
Sbjct: 240 LNALINENKAIVTEIPGTTRDVIEEYINIDGIPTKIVDTAGIRETEDVVEKNWCRKIKRE 299


>gi|114762196|ref|ZP_01441664.1| tRNA modification GTPase [Pelagibaca bermudensis HTCC2601]
 gi|114545220|gb|EAU48223.1| tRNA modification GTPase [Roseovarius sp. HTCC2601]
          Length = 373

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 148/383 (38%), Positives = 213/383 (55%), Gaps = 12/383 (3%)

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           +LD+ L+++F    SFTGE  AEFHVHG +A+   +L EL +M  LR+A  GEF+RRA E
Sbjct: 1   MLDEALVLLFSKGASFTGEAVAEFHVHGSVAIQRAVLRELEEMDGLRMAEAGEFTRRALE 60

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           N ++DL + E+LADLI SETE QR  ++   +G L      W   L H  S +E  +DF+
Sbjct: 61  NDRLDLTQVEALADLIESETESQRVQALRVFAGALGERVEDWRRDLVHAASLLEVTIDFA 120

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           + E+V    S EV   +  +   +   I      E IR G+++ I+G  N GKSSL NAL
Sbjct: 121 D-EEVPVDVSGEVREFLARVIAGLDREIRGMDGAERIRTGFEVAIVGAPNVGKSSLLNAL 179

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           A +D AI ++I GTTRDV+ + +++ G  V + DTAG+RET D VE+ GI R       +
Sbjct: 180 AGRDAAITSEIAGTTRDVIEVRMEIAGLPVTLLDTAGLRETQDPVEQIGIARARDRAMTS 239

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
           DL ++L +     +         I + +K+DL           IS+ TG+GL+ LI++I 
Sbjct: 240 DLRVILSDERGMPDFDVSDGD--IVLRSKADLAGEAEG-----ISAKTGQGLDALISEIG 292

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLG 417
             LS+K +     + + +RH     +    LE A   L       D+ AE +R A  +L 
Sbjct: 293 ERLSDKVQA--AGLATRERHRVAFLEGRIALEDAISLLARGPDSYDLAAEEIRAAIRALE 350

Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440
            + G +DVE LLD IFS FCIGK
Sbjct: 351 LLIGRIDVENLLDEIFSSFCIGK 373


>gi|296810456|ref|XP_002845566.1| tRNA modification GTPase GTPBP3 [Arthroderma otae CBS 113480]
 gi|238842954|gb|EEQ32616.1| tRNA modification GTPase GTPBP3 [Arthroderma otae CBS 113480]
          Length = 622

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 159/552 (28%), Positives = 242/552 (43%), Gaps = 126/552 (22%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLD-----GRI 60
           TI+A+ST    +AI+IIR+SG  C  + + +C  +K P PR A+LR  +          I
Sbjct: 62  TIYALSTAPGRAAIAIIRISGSDCIPIYKALCPGRKLPKPRFAALRTIYEPGKPTSGDNI 121

Query: 61  LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--------LRLANPG 111
           LD G L+  FP P + TGED  E HVHG  AV+  IL  + K           +R A PG
Sbjct: 122 LDSGALVFHFPGPNTVTGEDVLELHVHGSPAVIRSILNAIPKCAGTDGAPSSSIRYAEPG 181

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+RRAF N ++DL + E+L + ++++TE QRRL++ G +  LS+ Y QW  +L + R  
Sbjct: 182 EFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQWRQQLLYARGE 241

Query: 172 IEADLDFSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           +EA +DFSE++         + +    +  L + I+ HI     GE++R+G K+ +LG  
Sbjct: 242 LEALIDFSEDQHFDESVDDFIFSVTKQVHNLLHQINLHIQNAAKGELLRSGIKVALLGAP 301

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---------- 278
           NAGKSSL N +  ++ AIV+   GTTRD++ + +DL G+L K  D AG+R          
Sbjct: 302 NAGKSSLLNQVVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSELSKSHIVA 361

Query: 279 -----ETDDIVEKEGIKRTFLEV---------------ENADLILLLKEINSKKEISFPK 318
                 T   VE+EGI+R                       +L L   E+ S        
Sbjct: 362 QGQTVSTIGKVEEEGIRRAKARALESDVVVVVLSVEGSREQELSLE-PEVASAVHSCLNL 420

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGE----------------------------- 349
           +   I    K+D  S      DH++SS+ G+                             
Sbjct: 421 DKRVIVAINKTDRLSVVPG--DHVLSSYKGQVSTIFKGLNPDLIFPISCQEAQNPTGRDP 478

Query: 350 -GLEELINKIKSILSNKFKKL------------------PFSIPSHKRHLYHLSQTVRYL 390
            G++ L+  +          +                    S+    R  ++L    ++L
Sbjct: 479 GGIQALLKGLIRTFEEISTPVGLHADGNQTDQQFDRSYWEDSLGVTHRQSFNLQNCAQHL 538

Query: 391 EMASLNEKDCG----------------------LDII--AENLRLASVSLGKITGC---V 423
                                            +DI+  AE+LR A+ SL KITG     
Sbjct: 539 NDFLSQANQGPITPDNAVDNIKNNMIVKQVEKDIDIVTAAEHLRFAAESLAKITGRGEGG 598

Query: 424 DVEQLLDIIFSK 435
           DVE +L ++F K
Sbjct: 599 DVESVLGVVFEK 610


>gi|332029663|gb|EGI69552.1| tRNA modification GTPase GTPBP3, mitochondrial [Acromyrmex
           echinatior]
          Length = 473

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 148/414 (35%), Positives = 222/414 (53%), Gaps = 33/414 (7%)

Query: 41  KKPFPRKASLRYFFGLDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL 99
            K  PR+A L+     +   ++D GL + FP P SFTGEDS EFHVHGG A++  +++ L
Sbjct: 5   SKLEPRRAFLQKIRDPETREVIDNGLCLWFPGPHSFTGEDSVEFHVHGGSAILTKLMQAL 64

Query: 100 AKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYG 159
           +++  +  A PGEF+RRAF N K+DL E E LADLI +ETE QR+ ++  + G L  LY 
Sbjct: 65  SRLQ-VHPALPGEFTRRAFYNNKLDLTEVEGLADLIEAETECQRKQALLQVDGILRKLYN 123

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
            W   L+   + IEA +DF EE++++N   +   + +  L  ++  H++ G+ GEI+RNG
Sbjct: 124 SWRKVLSESVASIEAYIDFGEEDNIENDVIQNAHHALRQLMRELEEHLADGRRGEILRNG 183

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            + VI+G  N GKSSL N L +++ AIVT I GTTRDV+ +  ++ GY V I+DTAGI E
Sbjct: 184 VRTVIIGEPNVGKSSLLNHLVQRNAAIVTPIAGTTRDVIELTANISGYPVLIADTAGITE 243

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEI---------------------NSKKEISFP 317
              DIVE EGI+R     ENAD ++++ +                        ++ ++  
Sbjct: 244 DIGDIVEAEGIRRARSHAENADFVVVMIDALKCATSGLTYKDYVREYLSSLGIQELLAKI 303

Query: 318 KNIDFIFIGTKSDLYSTYTEEY-----DHLISSFTGEGLEELINKIKSILSNKFKK--LP 370
               FI I  K DL     + +       L+S  T +G ++L+  +    SN        
Sbjct: 304 GRERFIVIANKKDLLKEEEKRHLDNAEAVLVSCRTEDGFQDLLRSLTDHFSNICGDPSAE 363

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASL--NEKDCGLDIIAENLRLASVSLGKITGC 422
               S  RH  HL + +R+L+        +   + I AE +  A   LG+ITG 
Sbjct: 364 CPTISQARHRNHLDRCLRHLQKYFEFCANEQHDMAIAAEEIHKAMRELGRITGH 417


>gi|315045147|ref|XP_003171949.1| tRNA modification GTPase mss1 [Arthroderma gypseum CBS 118893]
 gi|311344292|gb|EFR03495.1| tRNA modification GTPase mss1 [Arthroderma gypseum CBS 118893]
          Length = 643

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 155/552 (28%), Positives = 237/552 (42%), Gaps = 125/552 (22%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-----DGRI 60
           TI+A+ST +  +AI+IIR+SGP C  + + +C  +  P PR A+LR  +          I
Sbjct: 94  TIYALSTASGRAAIAIIRVSGPDCISIYKALCPNRNLPKPRFAALRTLYEPGKPVSTNNI 153

Query: 61  LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--------LRLANPG 111
           LD G L+  FP+P + TGED  E HVHG  AV+  IL  + K  +        +R A PG
Sbjct: 154 LDSGALVFHFPAPNTVTGEDVLELHVHGSPAVIKSILSAIPKCASSGGVPLASIRYAEPG 213

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+RRAF N ++DL + E+L + ++++TE QRRL++ G +  LS+ Y QW  +L + R  
Sbjct: 214 EFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDTLSTRYEQWRKQLLYARGE 273

Query: 172 IEADLDFSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           +EA +DFSE++         + +    +  L   I+ HI     GE++RNG K+ +LG  
Sbjct: 274 LEALIDFSEDQHFDESVEDFISSVTVQVHNLLRQINLHIKNASKGELLRNGIKVALLGAP 333

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD------- 281
           NAGKSSL N +  ++ AIV+   GTTRD++ + +DL G+L K  D AG+R          
Sbjct: 334 NAGKSSLLNQIVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSKLSQNHPTG 393

Query: 282 ---------DIVEKEGIKRT---------------------------------------- 292
                      VE+EGI+R                                         
Sbjct: 394 QGNVVPTAIGKVEEEGIRRAKARALESDVVVVVLSVEGPREQGLSLEPEVVSAVNGCLKL 453

Query: 293 ----FLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
                + +   D+  L  E       ++   +  IF G   DL    + +     +    
Sbjct: 454 DKKVLVAINKTDM--LCVEPGDHIVSNYKAQVSAIFNGLDPDLILPISCQRAQNPTGQDP 511

Query: 349 EGLEELINKIKSILSNKFKKL------------------PFSIPSHKRHLYHLSQTVRYL 390
            G++ L+  +                               S+    R   +L    ++L
Sbjct: 512 GGIQSLLGALIRTFEEISTPAGLHSDGNTTGQQYDKSYWEDSLGVTHRQSSNLQICAQHL 571

Query: 391 EMASLNEKDCGL--------------------DI----IAENLRLASVSLGKITGC---V 423
                   D  +                    DI     AE+LR A+ SL KITG     
Sbjct: 572 NDFLSQAHDSSITPDNAIDKTENSTVIKQVEKDIEIVTAAEHLRFAAESLAKITGRGEGG 631

Query: 424 DVEQLLDIIFSK 435
           DVE +L ++F K
Sbjct: 632 DVESVLGVVFEK 643


>gi|157781617|gb|ABV72163.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           phoeniculicola]
          Length = 270

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 98/271 (36%), Positives = 155/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG    Q+ + +     K      S    +G        +I+D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVQIADKVYQSGSKSLIEVPSHTIHYGHIIDPKSEQIIDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +L+ L      RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMKAPKTFTREDVVEINCHGGIVVVNQLLQ-LVLREGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDRAMNLALNQLDGNLSHLIRTLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++K +L    F++  I   +   K G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTKLLLEKANFVQKQIDQLLVTAKQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781585|gb|ABV72147.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           hirae]
 gi|157781587|gb|ABV72148.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           hirae]
          Length = 270

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 97/271 (35%), Positives = 160/271 (59%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     + + + +  KK      S    +G      + +I+D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVALADKVYRCGKKSLLEVPSHTIHYGHITDPKNEQIIDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMLAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LSSL      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMGLALNQLDGNLSSLIRSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     ++  I + ++  K G+++R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTRLLLEKATMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|33519494|ref|NP_878326.1| tRNA modification GTPase TrmE [Candidatus Blochmannia floridanus]
 gi|46577399|sp|Q7VQV3|MNME_BLOFL RecName: Full=tRNA modification GTPase mnmE
 gi|33517157|emb|CAD83539.1| GTPase for tRNA modification and thiophene and furan oxidation
           [Candidatus Blochmannia floridanus]
          Length = 474

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 153/474 (32%), Positives = 245/474 (51%), Gaps = 37/474 (7%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61
           N+E +TI A+ST      I IIR+SG    +V   +   K P PR A        +G I+
Sbjct: 3   NNEIDTIAAISTPIGRGGIGIIRVSGKLVPEVAMKLF-NKIPKPRTAEYLTCIDHNGSIM 61

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-LRLANPGEFSRRAFEN 120
           +K + + FP P SFTGE+  E H HGG  +++ +L+ +  + + +RLANPGEF+ RAF N
Sbjct: 62  EKVITLFFPEPHSFTGENILEIHGHGGQMILDLLLDRILNISSRIRLANPGEFTERAFLN 121

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            KIDL++AES+AD+I++ +    + +   + G  S+     ++K+T+ R++IE+ LDFS+
Sbjct: 122 EKIDLIQAESIADIINATSYQAAKSACNSLQGHFSNQIRIILNKITNFRTYIESTLDFSD 181

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           +E + + S + + N +  + ++ +        G ++R+G K+VI G  NAGKSSLFN+L 
Sbjct: 182 QE-ISDISYQHIYNTLQNIIDNTNQICKLTHSGVLLRDGIKVVIAGKPNAGKSSLFNSLI 240

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENA 299
            KD AI+++I GTTRD+L   + L G    I DTAG ++ + + +E  G++++  E+  A
Sbjct: 241 NKDRAIISNISGTTRDILHEYIQLNGIAFHIIDTAGFKKNSTNEIELIGMQKSKYELSKA 300

Query: 300 DLILLLKEINS--------------KKEISFPKNIDFI--FIGTKSDL------YSTYTE 337
           D IL + +                 KKE+S           I  KSDL        T  +
Sbjct: 301 DHILWVIDSTDYSHNNSYNNIINSLKKELSSNNIEAVFITIIRNKSDLSFEHNGIDTTNK 360

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLP---------FSIPSHKRHLYHLSQTVR 388
                +S+    G++ L   +      +  K            +  + KRHL  L +  +
Sbjct: 361 YACITLSALLNHGIDLLKKHLYDSAMLQIHKNSNFSSVEENQGNFIARKRHLKILQKVFQ 420

Query: 389 YLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           YL  A    +      D  AE+L+ A   L +I G +  + LL+ IF  FCIGK
Sbjct: 421 YLLSAKTQLQYNMTVNDCFAEDLKKAHEELAQIFGKLTPDDLLEEIFRAFCIGK 474


>gi|157781601|gb|ABV72155.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           gallinarum]
          Length = 270

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 95/271 (35%), Positives = 156/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFGLDGR---ILDKG 64
           +ST     AISI+RLSG     + + +    KKK       ++ Y    D     ++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGEQAISIADAVFQSGKKKLIDVSSHTIHYGHIFDPEKYQMMDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ +   P++FT ED  E + HGGI VVN IL+ L      RLA PGEF++RAF NG++D
Sbjct: 61  MVSIMRKPKTFTREDVVEINCHGGIVVVNQILQ-LVLRQGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS L  Q   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLAINQLDGNLSRLIRQLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     ++  I + +   + G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTRLLLEKANQVQKQIQALLQTAQQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRD++   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDIIEEYVNVRGVPLKLVDTA 270


>gi|156048568|ref|XP_001590251.1| hypothetical protein SS1G_09015 [Sclerotinia sclerotiorum 1980]
 gi|154693412|gb|EDN93150.1| hypothetical protein SS1G_09015 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 502

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 141/483 (29%), Positives = 234/483 (48%), Gaps = 74/483 (15%)

Query: 32  QVCEFICKKKK-PFPRKASLRYFF---GLDGRILD-KGLLIVFPSPESFTGEDSAEFHVH 86
            + + +C  K  P PR A++R  +        ILD   L++ FP+P++ TGED  E HVH
Sbjct: 20  DIYQSLCPSKPIPKPRYAAVRTLYEPLAPTRNILDSDALVLYFPAPKTVTGEDVLELHVH 79

Query: 87  GGIAVVNGILEELAKM---PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143
           GG A V  +L  + +      +R A PGEF+RRAF+N ++DL + E+L+D +S+ETE QR
Sbjct: 80  GGSATVKAVLSAIPQCTSPAKIRYAEPGEFTRRAFQNNRLDLAQVEALSDTLSAETEQQR 139

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL---K 200
           R ++ G SG L   Y  W  +L + R  +EA +DFSE++      ++ + N    +    
Sbjct: 140 RAAVRGTSGNLGRTYEAWRQQLLYARGELEALIDFSEDQHFDESPAELLWNVTAQVEVML 199

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
             I++H S    GE+++ G +I +LG  NAGKSSL N +  ++ +IV+   GTTRD++ +
Sbjct: 200 ESIAAHESASHRGELLKKGIRISLLGPPNAGKSSLLNQIVGREASIVSQEAGTTRDIVEV 259

Query: 261 DLDLEGYLVKISDTAGIR------------ETDDIVEKEGIKRTFLEVENADLILLLK-- 306
            LD+ GYL   +DTAG+R                 +E+EGI+R   +   +D+++ L   
Sbjct: 260 SLDIRGYLCTFADTAGLRTQVSPSESGKNDSIIGHIEQEGIRRAKAKANESDVVIALASI 319

Query: 307 ---EINSKKEISF--------PKNIDFIFIGTKSD-----LYSTYTEEYDHLISSFTGEG 350
              +I +  EI +         K    +    KSD     + S    ++         E 
Sbjct: 320 EWSDIRNGWEIRYDIETFEIAAKAPKSMIAINKSDSVTPEILSELINDFKKSQIDIITEN 379

Query: 351 --------------------LEELINKIKSILSNKF---KKLPFSIPSHKRHLYHLSQTV 387
                               +   I+++  +  N       L   +   +R    L+   
Sbjct: 380 VVPLMTISCKNAQASSSQGSIGHFIDEMVKVFENMTSLPTDLEDLLGVTERQRQLLAACS 439

Query: 388 RYL-------EMASLNEKDCGLDIIAENLRLASVSLGKITGC---VDVEQLLDIIFSKFC 437
            +L       ++   +E++  + + AE+LR A+  L +ITG     DVE++L ++F KFC
Sbjct: 440 AHLLDFTKEAQLQVDDEREVDIVLAAEHLRSAANCLSRITGRGEAGDVEEVLGVVFEKFC 499

Query: 438 IGK 440
           +GK
Sbjct: 500 VGK 502


>gi|88608741|ref|YP_506593.1| tRNA modification GTPase TrmE [Neorickettsia sennetsu str.
           Miyayama]
 gi|123763699|sp|Q2GD53|MNME_NEOSM RecName: Full=tRNA modification GTPase mnmE
 gi|88600910|gb|ABD46378.1| tRNA modification GTPase TrmE [Neorickettsia sennetsu str.
           Miyayama]
          Length = 550

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 131/305 (42%), Positives = 196/305 (64%), Gaps = 5/305 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFI-CKKKKPFPRKASLRYFFGLDGRILDKGL 65
           TI+A+ST    S +++ R+SGP   +  E +    K+P PR       F  +  ++D+ L
Sbjct: 3   TIYALSTVFGKSGVAVFRISGPDALRALELLGLDIKQPRPRFVYFARLFD-EQLLIDEVL 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ F SP SFTGED  E H HG IAV+  I E+L+ +   + A PGEF+RRA  N ++DL
Sbjct: 62  VVYFASPASFTGEDVVELHSHGSIAVLRYISEKLSTL--FKPAEPGEFTRRAVLNNRMDL 119

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE + D+I+SET+ Q + +   +SG+L+  Y    DK+  + S++EA +DF + E++ 
Sbjct: 120 TKAEGIIDIINSETQEQLKQASRHLSGKLAEEYNSLRDKIIKVLSYLEAYIDFPD-EEIP 178

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                E+   I+ ++ DIS +++ GK+GE IR G+ +VI+G  N GKS+LFN LAK+D+A
Sbjct: 179 ETVLAEIQQSIVAIQCDISRYLADGKVGEKIREGFSVVIVGKPNVGKSTLFNYLAKRDLA 238

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           IVTDIPGTTRD+L + LD  GY V +SDTAGI+ET D +EK GI R   +   AD+I+ L
Sbjct: 239 IVTDIPGTTRDILEVRLDCHGYPVILSDTAGIQETCDAIEKMGITRALKKATEADVIVFL 298

Query: 306 KEINS 310
           ++I  
Sbjct: 299 RDITE 303



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 9/124 (7%)

Query: 321 DFIFIGTKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             + + TK D+     S + ++    IS + GEG++ L++KI  I+      +   I + 
Sbjct: 432 PVVKVVTKGDIAPTQLSFWQDKGYICISVYKGEGMQLLLDKIFDII--SSSNIEAHIITR 489

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436
            RH   L   + +L   +    D  +++ AE ++LA+  +  +TG + ++ +LD IFS F
Sbjct: 490 ARHRLALENALEHLRRFNT---DLPIELAAEEIKLAANHIASVTGEIKLDDVLDEIFSSF 546

Query: 437 CIGK 440
           CIGK
Sbjct: 547 CIGK 550


>gi|213609504|ref|ZP_03369330.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 268

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 105/271 (38%), Positives = 163/271 (60%), Gaps = 3/271 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E++   S  ++   +  +  D+ +  ++ + G ++R G K+VI G  NAGKSSL NALA
Sbjct: 179 -EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            ++ AIVTDI GTTRDVL   + ++G  + I
Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHI 268


>gi|157781597|gb|ABV72153.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           gallinarum]
 gi|157781599|gb|ABV72154.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           gallinarum]
          Length = 270

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 96/271 (35%), Positives = 156/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFGLDGR---ILDKG 64
           +ST     AISI+RLSG     + + +    KKK       ++ Y    D     ++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGEQAISIADAVFQSGKKKLIDVSSHTIHYGHIFDPEKYQMMDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ +   P++FT ED  E + HGGI VVN IL+ L      RLA PGEF++RAF NG++D
Sbjct: 61  MVSIMRKPKTFTREDIVEINCHGGIVVVNQILQ-LVLRQGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS L  Q   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLAINQLDGNLSRLIRQLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     ++  I + +   + G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTRLLLEKANQVQKQIQALLQTAQQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLVDTA 270


>gi|157781581|gb|ABV72145.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           durans]
          Length = 270

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 96/271 (35%), Positives = 159/271 (58%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     + + +    KK      S    +G      + +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVALADKVYSCGKKSLLEVPSHTIHYGHIVDPKNEQLVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMLAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTKLLLEKATMIQERIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|299471091|emb|CBN78950.1| TrmE, organellal GTPase involved in tRNA modification [Ectocarpus
           siliculosus]
          Length = 790

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 125/360 (34%), Positives = 202/360 (56%), Gaps = 49/360 (13%)

Query: 5   KETIFAVSTG-ALPSAISIIRLSGPSCFQVCEFIC------------------------- 38
           ++TIFA++TG A P+ ++++R+SGP   QV + +                          
Sbjct: 195 EDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSAANLSSVTAAEASAGGDAGVAASA 254

Query: 39  -----------KKKKPFP--RKASLRYFFGL-DGRILDKGLLIVFPSPESFTGEDSAEFH 84
                      ++  PFP  R+A +R  +    G +LD+ L++  P P SFTGED+ E H
Sbjct: 255 APAVVNGGGAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRSFTGEDTVELH 314

Query: 85  VHGGIAVVNGILEELAKMPNL------RLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
            HG  AV+NG+L+ LA M         RLA  GEF++RA+ NG++DL   E LADLI+++
Sbjct: 315 THGSRAVINGVLDALAGMGAASGMRRVRLAERGEFTQRAYGNGRMDLTGVEGLADLIAAD 374

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ--NFSSKEVLNDI 196
           T  QR+ +++ M G L  +Y +W  +L    +  EA +DF ++E+    + +   ++  +
Sbjct: 375 TAAQRKQALKQMGGALRDMYEEWRHQLKGCLAHAEAVIDFGDDEEDVGGDAAFAAMMPRV 434

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L  +I  H+  G  GEI+R+G ++ I+G  NAGKSSL N LA +  AIV+ + GTTRD
Sbjct: 435 RGLAAEIDRHLRDGGRGEIVRSGVRVAIVGPPNAGKSSLLNLLAARPAAIVSPVAGTTRD 494

Query: 257 VLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           V+ + +D+ G  V +SDTAG+ + TDD +E+EG++R    V+NA L + + +  +    +
Sbjct: 495 VVEVQMDIAGLPVTLSDTAGLPKATDDEIEREGMRRARSAVDNAHLAIFVVDATNTDGAT 554



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 5/100 (5%)

Query: 344 SSFTGEGLEELINKIKSILSNKFK---KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
           S  T EGL+  +  +++ + ++F+        + + +RH  H+   +  L  A       
Sbjct: 693 SCKTKEGLDGFMEHLEAEVRSRFQGAADDESPLITRRRHRQHVEACLLALRAAQ--RPQM 750

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            LD+ AE LR+AS  LG+ITG V VE+LLD+IF  FCIGK
Sbjct: 751 PLDLAAEELRIASSELGRITGAVGVEELLDVIFRDFCIGK 790


>gi|94496563|ref|ZP_01303139.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58]
 gi|94423923|gb|EAT08948.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58]
          Length = 405

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 145/418 (34%), Positives = 217/418 (51%), Gaps = 15/418 (3%)

Query: 25  LSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI-LDKGLLIVFPSPESFTGEDSAEF 83
           +SG       E +  +  P PR+ASL       G + LD+ LL+  P P + TGED AEF
Sbjct: 1   MSGALAGTAIEMLAHRM-PAPRQASLALLRDPTGGMPLDRSLLLWLPGPHTVTGEDMAEF 59

Query: 84  HVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143
           H HGG AV++ +   L+ +P LR A PGEF+RRAF++G++DL   E L+DL+++ET+ QR
Sbjct: 60  HCHGGRAVIDAVEAVLSAIPGLRRAQPGEFTRRAFDHGRMDLNAVEGLSDLLAAETQSQR 119

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
           R ++    G  S     W  +L  + +  EA LDFS+E+DV + S ++ + + L L    
Sbjct: 120 RAALSMAEGHFSRRIDDWRARLLALSAMAEAALDFSDEDDVPDASIEDDIAEQLSLLEGD 179

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
             ++      E +R+G ++V+ G  NAGKS+L NAL  +D AIV+ I GTTRD + +   
Sbjct: 180 VRNVLAAPSAERLRDGIRVVLAGPPNAGKSTLLNALVGRDAAIVSAIAGTTRDRIEVPAA 239

Query: 264 LEGYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322
           ++G     +DTAG+R+   D +E  GI R    +E AD+IL L   ++          D 
Sbjct: 240 IDGVAYLFTDTAGLRDDVGDDIEAIGIDRARAALEAADIILWLGAADA------MPRPDA 293

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           I I  +SD  +          S+ TGE +  L+    +  +            H+R    
Sbjct: 294 ILIAAQSDRQNNARSGLPV--SALTGENMGALLAA-LAARAATLLPGEGDYALHRRQRDL 350

Query: 383 LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + +   +L  A  +     L IIAE  RL    L  +TG    E +LD +FS FCIGK
Sbjct: 351 VVRLADHLRAARAH---HDLLIIAEECRLGRAVLDTLTGQASTEDMLDRLFSGFCIGK 405


>gi|157781607|gb|ABV72158.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           casseliflavus]
          Length = 270

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 97/271 (35%), Positives = 156/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     + + I +   K   +  S    +G      + R++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGEEAIAIADRIFQAGTKTLAQVPSHTIHYGHIVDPEENRLMDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +L V   P +FT ED  E + HGGI VVN +L+ L      RLA PGEF++RAF NG++D
Sbjct: 61  MLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +K  I + ++  + G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781593|gb|ABV72151.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           ratti]
          Length = 270

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 93/271 (34%), Positives = 162/271 (59%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG    ++ + + +  KK   +  S    +G      + +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVRLADKVYRGGKKSLSQVPSHTIHYGHIVDPKNQQVIDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ +  +P++FT ED  E + HGG+ VVN IL+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSIMLAPKTFTREDVVEINCHGGMIVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAIDLALNQLDGNLSALIRSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     ++  I + ++  K G+++R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTRLLLEKATMIQRSIQTLLATSKQGKVLREGLSTAIIGRPNVGKSSLLNYLLQEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781557|gb|ABV72133.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           malodoratus]
          Length = 270

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 96/271 (35%), Positives = 158/271 (58%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     + + + K  KK   +  S    +G      D +I+D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVAIADNVYKSGKKSLEQVPSHTIHYGHIIDPADQQIVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +L+ + +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPKTFTREDIVEINCHGGIVVVNQLLQLILRS-GARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    +++  + G LS L  Q   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDRAMSVAINQLDGNLSHLIRQLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +   I + +   K G+I+R G    I+G  N GKSSL N L  ++ 
Sbjct: 180 EELTTQLLLEKAQQVGQQIKALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVT+I GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781595|gb|ABV72152.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           mundtii]
          Length = 270

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 93/271 (34%), Positives = 154/271 (56%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     +   +     K      S    +G        +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQALTIANKVYQSGNKQLLDVPSHTIHYGHIVDPKSEQLVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P +FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPRTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    +++  + G LS+L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMGVALNQLDGNLSALIRSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++K +L     ++  I   ++  + G+++R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTKLLLEKAQMIQQRIEVLLATSQQGKVLREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781561|gb|ABV72135.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           pallens]
          Length = 270

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 95/271 (35%), Positives = 155/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG    ++ + +    KK   +  S    +G      +  ++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAIEIADKVFQSGKKTLKKVDSHTIHYGHIVDPANQVLVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V   P++FT ED  E + HGGI VVN +L+ + +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRRPKTFTREDVVEINCHGGIVVVNELLQLILR-EGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    +++  + G LS L  Q   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNVAINQLDGNLSKLIRQLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++K +L     +   I + +   K G+I+R G    I+G  N GKSSL N L  ++ 
Sbjct: 180 EELTTKLLLEKAGQVSQQIDALLVNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   + + G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVSVRGVPLKLVDTA 270


>gi|157781619|gb|ABV72164.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           hermanniensis]
          Length = 270

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 97/271 (35%), Positives = 157/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG    Q+ + I +  KK     +S    +G      D +I+D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVQIADSIYRSGKKSLVDVSSHTIHYGHIIDPSDQQIVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +L+ L      RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPKTFTREDIVEINCHGGIVVVNQLLQ-LVLRSGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    +++  + G LS L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNIAINQLDGNLSHLIRSLRQEILQTLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +   I + +   K G+I+R G    I+G  N GKSSL N L  ++ 
Sbjct: 180 EELTTQLLLEKSQQVGQQIDALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVT+I GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|320040661|gb|EFW22594.1| mitochondrial GTPase [Coccidioides posadasii str. Silveira]
          Length = 481

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 124/346 (35%), Positives = 190/346 (54%), Gaps = 34/346 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-----DGRI 60
           TI+A+ST    +AI+I+R+SGP+C QV + +C     P PR A+LR             +
Sbjct: 60  TIYALSTAPGRAAIAIVRVSGPACIQVYKGLCPGSPLPKPRYATLRTLCDPTQSPSSNAV 119

Query: 61  LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM----------PNLRLAN 109
           LD G L++ FP+P++ TGED  E H+HG  AV+  +L  + K             +R A 
Sbjct: 120 LDSGALVLYFPAPKTVTGEDVLELHIHGSPAVIKAVLNAIPKCLENKIETGLESCIRYAE 179

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G S  LS+ Y  W  +L + R
Sbjct: 180 PGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENWRQQLLYAR 239

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
             +EA +DFSE++         +++    +  L N I  HI     GE++R+G KI +LG
Sbjct: 240 GELEALIDFSEDQHFDESVDDFMISVTGQVRKLLNQIDVHIENASKGELLRSGIKIALLG 299

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD---- 282
             NAGKSSL N +  ++ AIV+   GTTRD++ + +DL G+L K  D AG+R        
Sbjct: 300 APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSAPPKLIG 359

Query: 283 ----------IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
                      VE+EGI+R       +DL++ +  +   +  S  K
Sbjct: 360 EERKDSTVIGEVEREGIRRAKARALESDLVIAVLSLEENQHGSALK 405


>gi|224012297|ref|XP_002294801.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|224013676|ref|XP_002296502.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968854|gb|EED87198.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969240|gb|EED87581.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 472

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 148/472 (31%), Positives = 232/472 (49%), Gaps = 73/472 (15%)

Query: 42  KPFPRKASLRYFFGLDGR-----------------ILDKGLLIVFPSPESFTGEDSAEFH 84
            P  R ASLR  +                       LD  L++ F  P SFTGED  E H
Sbjct: 1   LPNARMASLRTLYDPTADAKGTSDDEEEMQQQKRDPLDSALVLTFEGPNSFTGEDIVELH 60

Query: 85  VHGGIAVVNGILEELAKMPN------LRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
            HG  AVV+G+L  L+ + +      LR A+PGEF++RA+ +GK+ L+E E+LADLI ++
Sbjct: 61  CHGSRAVVHGVLSALSSLSSRAIPLQLRPADPGEFTQRAYAHGKLGLVEVEALADLIVAD 120

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS---------- 188
           T +QR+ +++   G LS LYG W ++L    +  EA +DF ++E +              
Sbjct: 121 TSLQRKQALQQFDGRLSRLYGGWREELIKGLAHAEAVIDFGDDEALDAHDEFDDGLNAND 180

Query: 189 -----SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
                   +   I  L+  ++ H++    GE++R+G +I I+G  NAGKSSL N LA +D
Sbjct: 181 GGMSIWGTIAPRIRSLRQAMNRHLADASRGELLRDGLRIAIVGRPNAGKSSLLNLLAGRD 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD----DIVEKEGIKRTFLEVENA 299
            AIV+  PGTTRDV+ + LDL G    + DTAG+RE      + +E EG+KR      +A
Sbjct: 241 AAIVSSSPGTTRDVVEVMLDLGGVRCTLLDTAGVREEKEEGVNEIEVEGMKRARRAARDA 300

Query: 300 DLILLLKEINS------------------KKEISFPKNIDFIFIGTKSDLYSTYTEEYD- 340
            +I+ + +                      +  S     + +++  K DL        + 
Sbjct: 301 HIIVGVVDATDLSRGLEAVDELIRVESESDESSSLLNRDNVLYVLNKLDLVEGNENSINS 360

Query: 341 --------HLISSFTGEGLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                     IS  T EG+++ ++ +  +++      +   ++ +  RH  H+      L
Sbjct: 361 KEQSNSPKFGISCTTSEGVDDFLSSLTQQALSLVSGDRDEGAVITRARHRRHVEAASDAL 420

Query: 391 EMASL--NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           E       +    LD+ AE LRLAS  LG++TG +DVE +LD++F+ FCIGK
Sbjct: 421 ERFEELSGQGYMALDMAAEELRLASSELGRVTGAIDVEDVLDVLFADFCIGK 472


>gi|300871775|ref|YP_003786648.1| tRNA-modification GTPase TrmE [Brachyspira pilosicoli 95/1000]
 gi|300689476|gb|ADK32147.1| tRNA-modification GTPase, TrmE [Brachyspira pilosicoli 95/1000]
          Length = 462

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 127/442 (28%), Positives = 222/442 (50%), Gaps = 24/442 (5%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--------KKKKPFPRKASLRYFF 54
           +  +TI A++T    SA+++IR+SG     +   IC           K   RK+      
Sbjct: 5   NLDDTIVALATPYSKSALALIRMSGKDSLNIASKICYYANNENKNITKFEHRKSYYALIK 64

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             +   +D+ +++   SP +FT ED+ EF  HG I V+  ++  + +    R AN GEF+
Sbjct: 65  DENNTPIDELVVLTTLSPNTFTSEDTVEFMCHGSIVVIESLINLIIR-NGARQANRGEFT 123

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RA+ NG+I + EAE++ DLI S   +    S+  + G L+    +  + + +    I  
Sbjct: 124 YRAYINGRIGISEAEAIHDLIDSNNRLMAEASIYKIRGRLTREIDKLRENVKNTLMLIYG 183

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +LDF E +D + FS  +++ +   +K DI + ++  K  E + NG K+ I+G  NAGKSS
Sbjct: 184 ELDFPE-DDTETFSYDKLIENFYTIKKDIENILNNSKRVENLINGIKVSIVGRVNAGKSS 242

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTF 293
           +FN +  K+ AIV++I GTTRD L+ ++ ++       DTAG  +E D+ +E EGI+R  
Sbjct: 243 IFNMILDKERAIVSNIAGTTRDFLSENIYIDNIPFYFMDTAGFHKEADNDIELEGIERAK 302

Query: 294 LEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYD--HL 342
                AD+I+ + + N             +   KN + I++  K DL   + E+ D    
Sbjct: 303 KCANEADIIIAVFDYNDNANDDDINLIEFLQQLKNKNIIYVLNKIDLEKKFNEKIDNAIE 362

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           IS+ T +G E+LI  +K+ + +    +       + R   +L + +  L +      +  
Sbjct: 363 ISTKTKQGKEKLIEALKNHIKDSDITIFNKESYVNNRERGYLERAIEQLNICIEKSNNNH 422

Query: 402 -LDIIAENLRLASVSLGKITGC 422
            LD +AE + + +  LG ++G 
Sbjct: 423 LLDEVAEEINILNNILGNVSGK 444


>gi|157781559|gb|ABV72134.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           pseudoavium]
          Length = 270

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 94/271 (34%), Positives = 156/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     + + +    KK      S    +G      D +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVAIADSVYQSGKKSLLDVPSHTIHYGHIVDPADHQVVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +L+ + +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPKTFTREDIVEINCHGGIVVVNQLLQLILRS-GARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    +++  + G LS L  Q   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDRAMNVAINQLDGNLSHLIRQLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +   I + +   K G+I+R G    I+G  N GKSSL N L  ++ 
Sbjct: 180 EELTTQLLLEKAQQVGQQIEALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVT+I GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|253582574|ref|ZP_04859795.1| thiophene/furan oxidation protein ThdF [Fusobacterium varium ATCC
           27725]
 gi|251835444|gb|EES63984.1| thiophene/furan oxidation protein ThdF [Fusobacterium varium ATCC
           27725]
          Length = 293

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 165/292 (56%), Gaps = 7/292 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR- 59
            +TI A+ST      I I+R+SG    ++   I + K        +  S+ Y    DG  
Sbjct: 3   FDTIAAISTPRGEGGIGIVRISGNHALEILGKIFRPKSKKVIGDLKNFSINYGHLYDGEN 62

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           ++D+ L+ V  +P ++T ED  E + HGG  +   +LE + K    RL+  GEF+RRAF 
Sbjct: 63  LIDEVLVSVMKAPNTYTKEDMVEINCHGGFVITEKVLETVLK-NGARLSESGEFTRRAFL 121

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG++DL +AE++ D+I  +TE    LS+E + G+L          +  + + I   LD+ 
Sbjct: 122 NGRLDLTQAEAVMDIIHGKTEKSVSLSLEQLRGDLKEQIEHLKKLVLDVAAHINVVLDYP 181

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E E + +   + +++++  + +   + I     G++I+ G K  I+G  N GKSS+ N++
Sbjct: 182 E-EGIDDPLPENLVDNLKEVMDTTDALIKSYDKGKMIKEGIKTAIVGKPNVGKSSILNSV 240

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
            K++ AIVT + GTTRDV+   ++L+G  + + DTAGIR+TDD+VE  G+++
Sbjct: 241 LKEERAIVTHVAGTTRDVIEEVVNLKGIPLVLVDTAGIRKTDDLVENIGVEK 292


>gi|157781609|gb|ABV72159.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           casseliflavus]
          Length = 270

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 96/271 (35%), Positives = 155/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST      ISI+RLSG     + + I +   K   +  S    +G      + R++D+ 
Sbjct: 1   ISTPPGEGPISIVRLSGEEAIAIADRIFQAGTKTLAQVPSHTIHYGHIVDPEENRLMDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +L V   P +FT ED  E + HGGI VVN +L+ L      RLA PGEF++RAF NG++D
Sbjct: 61  MLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +K  I + ++  + G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781603|gb|ABV72156.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           casseliflavus]
 gi|157781605|gb|ABV72157.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           casseliflavus]
          Length = 270

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/270 (35%), Positives = 155/270 (57%), Gaps = 7/270 (2%)

Query: 12  STGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKGL 65
           ST     AISI+RLSG     + + I +   K   +  S    +G      + R++D+ +
Sbjct: 2   STPPGEGAISIVRLSGEEAIAIADQIFQAGTKTLAQVPSHTIHYGHIVDPEENRLMDEVM 61

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           L V   P +FT ED  E + HGGI VVN +L+ L      RLA PGEF++RAF NG++DL
Sbjct: 62  LSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFTKRAFLNGRVDL 120

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            +AE++ DLI ++T+    L++  + G LS L      ++    + +E ++D+ E +DV+
Sbjct: 121 SQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEVNIDYPEYDDVE 180

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
             +++ +L     +K  I + ++  + G+I+R G    I+G  N GKSSL N L +++ A
Sbjct: 181 ELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSSLLNHLLREEKA 240

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 241 IVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|258569587|ref|XP_002543597.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237903867|gb|EEP78268.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 571

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 151/535 (28%), Positives = 240/535 (44%), Gaps = 114/535 (21%)

Query: 15  ALPSAISIIRLSGPSCFQVCEFI-CKKKKPFPRKASLRYFF-----GLDGRILDKG-LLI 67
              +AI+I+R+SGP+C Q+ + +      P PR ASLR  +          +LD G L++
Sbjct: 18  PGRAAIAIVRISGPACPQIYKGLSFDSSLPKPRYASLRTLYEPGKPPSTNTVLDSGALVL 77

Query: 68  VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----------LRLANPGEFSRRA 117
            FP+P++ TGED  E H+HG  AV+  +L  + K             +R A PGEF+RRA
Sbjct: 78  YFPAPKTVTGEDVLELHIHGSPAVIKAVLNAIPKCAGNGSEAGSQPSIRYAEPGEFTRRA 137

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F N ++DL + E+L + ++++TE QRRL++ G S  LS+ Y  W  +L + R  +EA +D
Sbjct: 138 FLNNRLDLPQIEALGNTLAADTEQQRRLAVRGTSDTLSARYEDWRQQLLYARGELEALID 197

Query: 178 FSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           FSE++         +L+    +  L N I+ HI     GE++R+G K+ +LG  NAGKSS
Sbjct: 198 FSEDQHFDESVDDFMLSITKQVRKLLNQINVHIENASKGELLRSGIKVALLGAPNAGKSS 257

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI------VEKEG 288
           L N +  ++ AIV+   GTTRD++ + +DL+   ++ + +  I ETD+       VE+EG
Sbjct: 258 LLNRIVGREAAIVSSEEGTTRDIVDVGVDLDMAGLRSTPSKVIGETDNTSVIIGEVEREG 317

Query: 289 IKRTFLEVENADLILLLKEINSKKE----------------ISFPKNIDFIFIGTKSD-L 331
           I+R       +DL++ +  +    +                     N   I    K+D L
Sbjct: 318 IRRAKARALESDLVIAVLSLEQCPQRGSSLKIESEVVDAVRDCLRLNKRVIIAVNKTDKL 377

Query: 332 YSTYTEEY----DHLISSFTGEGLEE----------------------------LINKIK 359
                 EY    + + S+F G G                               LI+  +
Sbjct: 378 PVNADREYSRMVEQICSTFQGLGRSHIYPISCKQAQGKTLDVPDPGNIQILLRGLIDAFE 437

Query: 360 SILS----------NKFKKLPFSIPSHKRHLYHLSQTVRYL------------------- 390
            +              F     S+    R   +L     +L                   
Sbjct: 438 EMAMPAQSEEADAQYDFSYYQDSLGVTHRQSSNLQICANHLKDFLSQTMPAQNANADDNT 497

Query: 391 -----EMASLNEKDCGLDII--AENLRLASVSLGKITGC---VDVEQLLDIIFSK 435
                + A   +K   +DI+  AE LR A+ S+ KITG     DVE +L ++F K
Sbjct: 498 TLQTPDDALAKDKMLDVDIVVAAEQLRFAADSIAKITGRGEGGDVESVLGVVFEK 552


>gi|157781553|gb|ABV72131.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           gilvus]
          Length = 270

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 93/271 (34%), Positives = 157/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     + + + +  KK      S    +G      + +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVTIADKVYRSGKKSLSDVPSHTIHYGHIIDPVEQQVVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +L+ + +    RLA PGEF++RAF NG++D
Sbjct: 61  MISVMRAPKTFTREDIVEINCHGGIVVVNQLLQLILRS-GARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    +++  + G LS L  Q   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDRAMSVAINQLDGNLSHLIRQLRQEILGTLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +   I + +   K G+I+R G    I+G  N GKSSL N L  ++ 
Sbjct: 180 EELTTQLLLEKAQQVGQQIDALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVT+I GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781573|gb|ABV72141.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           faecalis]
 gi|157781575|gb|ABV72142.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           faecalis]
          Length = 270

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 94/271 (34%), Positives = 158/271 (58%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     +   + +   K   +  +    +G      + +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQNDQLIDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +L V  +P++FT ED  E + HGGI VVN +  +L      R+A PGEF++RAF NG++D
Sbjct: 61  MLSVMRAPKTFTREDVVEINCHGGIVVVNQL-LQLLLREGARMAEPGEFTKRAFLNGRMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    +++  + G LS+L      ++ +  + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|320537537|ref|ZP_08037479.1| tRNA modification GTPase TrmE [Treponema phagedenis F0421]
 gi|320145619|gb|EFW37293.1| tRNA modification GTPase TrmE [Treponema phagedenis F0421]
          Length = 467

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 133/448 (29%), Positives = 217/448 (48%), Gaps = 33/448 (7%)

Query: 21  SIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILDKGLLIVFPSPESFTG 77
            I+R SG +C +       +     +       +G     G+ LD+ + +V+ +P+SFTG
Sbjct: 25  GIVRTSGKTCIERVSRFFSRPAALQKAPGNSIVYGWIIDAGKKLDEVVALVYRAPKSFTG 84

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           E+  E   HGG+  V   L  L      R A  GEFS R+F NGK DL  AE++A++I +
Sbjct: 85  ENCIEIICHGGVQTVKS-LYRLCLDSGFRAAEKGEFSFRSFINGKTDLTGAEAIAEIIGA 143

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED-VQNFSSKEVLNDI 196
           +T   + L+   +SG L +      +KL    + IE ++++ E+E+ + +     +L + 
Sbjct: 144 KTLQAQTLAAGRLSGNLFAELQAIKEKLLTALAAIEVEIEYPEDEETIADAFDTALLEEP 203

Query: 197 LFLKNDISSHISQGKLGE-IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           L    ++ +     + GE I + G +IV+ G +N+GKSSLFNAL K+D AIV+DI GTTR
Sbjct: 204 LTRLQELEA----SRAGEKIFQEGVRIVLAGKTNSGKSSLFNALLKEDRAIVSDIHGTTR 259

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
           D L  D+D  G  VK+ DTAGIRET D +E  G++R+   +  AD +  L +  +K    
Sbjct: 260 DWLETDIDFSGIPVKLFDTAGIRETSDTIEAIGVQRSLDLLAEADAVFYLADGRTKLSPE 319

Query: 312 -KEISFPKNIDFIFIGTKSDLYSTYTEEYD-----------------HLISSFTGEGLEE 353
            K+         I + +++ L +   ++Y                    I S T EG+  
Sbjct: 320 DKDFIVQNTKPLIVVRSRAALMTDGEKDYALKEMRALSAQAKKEFSCICIDSKTMEGVGA 379

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRH-LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
           L+    ++++             +R  +                 +   LD I +++  +
Sbjct: 380 LVQTTAALITEGKPATSDISLGTERQKIAVQQAAAAAKHALHAARQGFPLDAIVQDIEES 439

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LG+ITG V  + +LD IFS FC+GK
Sbjct: 440 LAFLGEITGEVRSDDILDKIFSGFCVGK 467


>gi|157781583|gb|ABV72146.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           durans]
          Length = 270

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 96/271 (35%), Positives = 159/271 (58%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     + + +    KK      S    +G      + +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVALADKVYSCGKKSLLEVPSHTIHYGHIVDPKNEQLVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVILAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTKLLLEKATMIQERIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781577|gb|ABV72143.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           dispar]
          Length = 270

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 94/271 (34%), Positives = 156/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG    ++   + +   K      S    +G        +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDDAVKIANEVYRSGSKQLADVDSHTIHYGHIFDPATEKMVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPKTFTREDVIEINCHGGIVVVNQILQLLLR-QGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LSSL      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLALNQLDGNLSSLIRSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     ++  I+  +   + G+I+R G    I+G  N GKSSL N L  ++ 
Sbjct: 180 EELTTRLLLEKANQVQGQINQLLLTAQQGKILREGLSTAIIGRPNVGKSSLLNHLLAEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTD+ GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDVAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781611|gb|ABV72160.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           asini]
          Length = 270

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 94/271 (34%), Positives = 154/271 (56%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     + + I    +K   +  S    +G      + + LD+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVAIADGIYHMGQKRLTQVPSHTIHYGHIVDPKNEKTLDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGG+ V N IL+ L      RLA PGEF++RAF NG++D
Sbjct: 61  MVTVLRAPKTFTREDIVEINCHGGMVVTNQILQ-LVLRCGARLAEPGEFTKRAFLNGRMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS L      ++ +  + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMDLALTQLDGNLSHLIRNLRQEILNTLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++K +L     ++  I   +   + G+I+R G    I+G  N GKSSL N L  ++ 
Sbjct: 180 EELTTKLLLEKAQEVQGQIDGLLQTAQQGKILREGLSTAIIGRPNVGKSSLLNYLLDEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVT+I GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLVDTA 270


>gi|157781565|gb|ABV72137.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           sulfureus]
          Length = 270

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 97/271 (35%), Positives = 157/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG    ++ + + K   K     AS    +G      D +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVEIADRVFKAGSKQLVNVASHTIHYGHIVDPKDDKLMDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +  +L      RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPKTFTREDVIEINCHGGIVVVNQL-LQLLLRQGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLALNQLDGNLSHLIRALRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +K  I S +   + G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EEMTTRLLLEKATQVKAQIESLLQTAQQGKILREGLDTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLVDTA 270


>gi|157781579|gb|ABV72144.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           canis]
          Length = 270

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 97/271 (35%), Positives = 159/271 (58%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     + + +    KK     AS    +G        ++LD+ 
Sbjct: 1   ISTPPGEGAISIVRLSGEDAVSIADLVFSAGKKQLCDVASHTIHYGHIIDRRREQLLDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGG+ V N +L+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MVTVMRAPKTFTREDVIEINCHGGMVVANQVLQLLLR-EGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+   +L+++ + G LS L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMQLAIQQLDGNLSQLIRTLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L    F++  I + +   + G+I+R G    I+G  N GKSSL N L K+D 
Sbjct: 180 EELTTQLLLEKARFVQAQIQNLLVTAQQGKILREGLSTAIIGRPNVGKSSLLNHLLKEDK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLVDTA 270


>gi|290953967|ref|ZP_06558588.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312644|ref|ZP_06803394.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 379

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 121/392 (30%), Positives = 205/392 (52%), Gaps = 40/392 (10%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGP----------SCFQVCEFICKKKKPFPRKASLRY 52
           + K+TI A++T                            ++ E + KK+   PR A+   
Sbjct: 2   YTKDTIVAIATPQGN----------GGIGIIRISGIDALEIAEKLTKKQL-KPRYATFCN 50

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
            +  D  I+D G++I F +P S+TGED  E   HG   ++N I++  A     R+A  GE
Sbjct: 51  VYN-DNEIIDHGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGE 108

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+ RAF N K+DL +AE++AD+I++ +E+  + + + + G+ S      ++KL ++R ++
Sbjct: 109 FTERAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYV 168

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA +DF E E++     +++ + +  +   I +  +  K G I+  G  ++++G  NAGK
Sbjct: 169 EASIDFPE-EEINFLEDQKIHSSLEEIYKVILAIKNSCKQGVILAEGITLILVGKPNAGK 227

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA K+ AIVT I GTTRD++   + + G  + I DTAG+R +DDI+E EGIKR 
Sbjct: 228 SSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRA 287

Query: 293 FLEVENADLILLLKE--------INSKKEI------SFPKNIDFIFIGTKSDLYSTYTEE 338
             +++ AD +L + +         +  KEI        PK+ID  ++  K DL       
Sbjct: 288 IKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHN 347

Query: 339 YDHL--ISSFTGEGLEELINKIKSILSNKFKK 368
           + +   IS+    G+++L   I + +     K
Sbjct: 348 HANHIYISAENNIGIDKLKEHILNKVGYTNTK 379


>gi|325108824|ref|YP_004269892.1| tRNA modification GTPase mnmE [Planctomyces brasiliensis DSM 5305]
 gi|324969092|gb|ADY59870.1| tRNA modification GTPase mnmE [Planctomyces brasiliensis DSM 5305]
          Length = 471

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 211/468 (45%), Gaps = 34/468 (7%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR-------YFFG 55
           +  ETI A+++   P    I+R+SG     +   + +     P   + R          G
Sbjct: 8   NPDETIAALASAPGPGQRGIVRISGEETVALLNSLLEDSPNAPEFDNRRAKRYPVEICLG 67

Query: 56  LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G      + +  P   S+TG+ SAE H+ G   +++ +L  + K+   R A PGEF+ 
Sbjct: 68  ERGGSFPMAVHVW-PGQRSYTGQPSAELHLLGAPPILDWLLGRIYKL-GARPAQPGEFTL 125

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           R+F +G++ L++AE++  +I +    Q  ++++ ++G +S    +  D+L    + +EA 
Sbjct: 126 RSFLSGRLSLVQAEAVLGVIDARGNAQLDVALQQLAGGVSQRMRRMRDQLLEDLADLEAG 185

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF E ED++     E  + +   +++++                +IV+ G  NAGKSSL
Sbjct: 186 LDFVE-EDIEFIDRAEFADRLQNWQSEVALLCEAADRRMHSAEEPRIVLAGLPNAGKSSL 244

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
           FNAL  +  AIV+DI GTT D L     L G  V I DTAG     + + +         
Sbjct: 245 FNALTGET-AIVSDIEGTTTDYLVGRTQLTGTNVAIFDTAGWETGSNPIGELAQVFRQSG 303

Query: 296 VENADLILLLKEINSKKEISFPKNIDFI----------FIGTKSDLYSTYTEEYDHLISS 345
            E ADLI+     +  K+     +I F            + TK+D     T   +H  ++
Sbjct: 304 YEQADLIVWCTPADWSKDQRQADDIHFDKLASGAVPTIRVCTKTDRAKAVTTTEEHEDAA 363

Query: 346 FTGE-----------GLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
             G            GL+ L   I   +  N+ +       +  R    L +T  +LE A
Sbjct: 364 RNGRFTCGATATQAGGLDALKAAIAEAVSENQGQSQELLGSTAARCRDSLFRTRSHLEEA 423

Query: 394 -SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L E   G + +AE LR A   LG I G V  + LLD +FSKFCIGK
Sbjct: 424 CHLAETSLGDEFLAEELRGAIQELGVILGHVYTDDLLDRVFSKFCIGK 471


>gi|103488330|ref|YP_617891.1| tRNA modification GTPase TrmE [Sphingopyxis alaskensis RB2256]
 gi|123379471|sp|Q1GP64|MNME_SPHAL RecName: Full=tRNA modification GTPase mnmE
 gi|98978407|gb|ABF54558.1| tRNA modification GTPase trmE [Sphingopyxis alaskensis RB2256]
          Length = 419

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 244/426 (57%), Gaps = 17/426 (3%)

Query: 24  RLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEF 83
           R+SG    +  + +  +  P PR+ASL      DG  LD  L++ FP P + TGED AE 
Sbjct: 2   RISGIDAAKALQALAGR-LPTPRRASLARLTDTDGGALDHALILWFPGPATATGEDLAEL 60

Query: 84  HVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143
           H+HGG AVV  +   LA MP LR A  GEF+RRAF NG+IDL EAE LADL+++ETE QR
Sbjct: 61  HLHGGRAVVAAVEAALAAMPGLRRAEAGEFTRRAFANGRIDLAEAEGLADLLAAETESQR 120

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ--NFSSKEVLNDILFLKN 201
             +++  SG +S     W  +L  + +  EA+L+F++E+DV+     ++ V   +  L  
Sbjct: 121 VQALDHASGHVSRAVAGWQARLLALMAAAEAELNFADEDDVEVGEGVAQRVSEGMAALAG 180

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           ++   +++    E+I  G  +VI G  NAGKS+L NALA++++AIV+ + GTTRDV+   
Sbjct: 181 ELGEWLAR-PAAEVIAEGLSVVIAGPPNAGKSTLINALAQRELAIVSPVAGTTRDVIETP 239

Query: 262 LDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320
           L L+G  ++ SDTAG+R E+ D +E  GI R    VE AD++L L    + KE   P++ 
Sbjct: 240 LALDGIAMRFSDTAGLRGESADAIEMIGIDRAKAAVEGADILLWL---GAPKEA--PEHP 294

Query: 321 DFIFIGTKSDLYS------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             I I  ++D +             D ++S+ TGEG++ L   I  +      +   +  
Sbjct: 295 RTILIAAQADRWRGDAAAEAEAAHCDLILSAATGEGMDRLHTMIVEMARTLLPREGEATL 354

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFS 434
             +R    L++   +LE+ + + +   L ++AE LRLA  +L +ITG   VE +LD +F 
Sbjct: 355 -RQRQRDALAEAKGWLEVETGSREAGDLILLAERLRLAGATLDRITGRGGVEDMLDTLFG 413

Query: 435 KFCIGK 440
           +FCIGK
Sbjct: 414 RFCIGK 419


>gi|157781549|gb|ABV72129.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           avium]
 gi|157781551|gb|ABV72130.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           avium]
          Length = 270

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 93/271 (34%), Positives = 155/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     + + +    KK      S    +G      +  I+D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDHAVAIADSVYHSGKKSLLDVPSHTIHYGHIIDPEEQEIVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +L+ + +    RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPKTFTREDIVEINCHGGIVVVNQLLQLILRS-GARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    +++  + G LS L  +   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDRAMSVAINQLDGNLSHLIRRLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +   I + +   K G+I+R G    I+G  N GKSSL N L  ++ 
Sbjct: 180 EELTTQLLLEKAQQVGQQIDALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVT+I GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|313621862|gb|EFR92546.1| tRNA modification GTPase MnmE [Listeria innocua FSL J1-023]
          Length = 340

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 103/340 (30%), Positives = 177/340 (52%), Gaps = 17/340 (5%)

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           F NG+IDL +AE++ DLI ++T+    +++  M G LS L      ++    + +E ++D
Sbjct: 1   FLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNID 60

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           + E +DV+  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N
Sbjct: 61  YPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLN 120

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L +++ AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + 
Sbjct: 121 QLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALA 180

Query: 298 NADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHL 342
           +AD ILL+        +  +         +++ +  K+DL +            E     
Sbjct: 181 DADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDIDRVRELAGENPIVA 240

Query: 343 ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDC 400
            S    EGLE L   IK++           +  S+ RH+  L Q +  L   +   +   
Sbjct: 241 TSLVNDEGLEALEEAIKALFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGM 300

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 301 PVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 340


>gi|149919106|ref|ZP_01907590.1| tRNA modification GTPase TrmE [Plesiocystis pacifica SIR-1]
 gi|149820036|gb|EDM79457.1| tRNA modification GTPase TrmE [Plesiocystis pacifica SIR-1]
          Length = 445

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 139/448 (31%), Positives = 224/448 (50%), Gaps = 28/448 (6%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TI  V+TG     ++I+RLSGP+   +   +   + P PR A+LR     +     + L+
Sbjct: 12  TIVGVATGRPDGGVAIVRLSGPAARTIAAAMLTGELPEPRVAALRRLVLGE-----RALV 66

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           +  P P SFTGED  E HVHGG   V  ++E  A       A PG+F+RRAFE+G++ L 
Sbjct: 67  LDMPGPRSFTGEDVVELHVHGGERNVGQVVEA-ALAAGASPAGPGDFTRRAFEHGRLSLD 125

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE +A +I ++T+     +   ++GEL         +L  +R  +EA+LDF E  DV  
Sbjct: 126 QAEGIAAIIGAQTQGALDQARRLVAGELGRAVEAVHGRLRLLRVEVEANLDFPE--DVSA 183

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                       L+ ++   +++ + G   R   ++V+ G  NAGKSSLFNAL  +  A+
Sbjct: 184 ADEARFAETAASLRVELEGWLARFEGGRRARERARVVLAGPPNAGKSSLFNALLGRSRAL 243

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLL 305
           V+   GTTRD +  +L+LE   V + DTAG+RE ++D +E  G+     ++  AD+++ L
Sbjct: 244 VSPTAGTTRDFVEAELELE-RSVALVDTAGLREASEDAIELAGVALGQDQLAGADVVIWL 302

Query: 306 KEINSKKEISFPKNIDFIFIGT--------KSDLYSTYTEEYDHLISSFTGEGLEELINK 357
           +  +        +        T        K+DL S         +S+ TG GL++L   
Sbjct: 303 EGADQPALAESERQRWLEGADTATVIPALAKADLDSPRVVAGWLSLSAHTGAGLDDLRRA 362

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSL 416
           +   +    + +  +     RH    ++ V  L E+ +   +  GL+++A +L +A   L
Sbjct: 363 LADAVRPGEQWIGLA-----RHRQCAAEAVEALGEVEAQLREGLGLELVAFSLAVAQTRL 417

Query: 417 GKITGCV----DVEQLLDIIFSKFCIGK 440
           G ITG        E++L  IFS FCIGK
Sbjct: 418 GAITGHTGLGPVGEEVLHAIFSSFCIGK 445


>gi|134082090|emb|CAK42207.1| unnamed protein product [Aspergillus niger]
          Length = 615

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 121/320 (37%), Positives = 185/320 (57%), Gaps = 26/320 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLD-----GRI 60
           TI+A+ST +  +AI+++R SGP+C Q+ + +C     P PR A +R  +          +
Sbjct: 64  TIYALSTASGRAAIAVVRASGPACVQIYKSLCPEAPLPRPRLAVVRTLYDPSQKPSPNTV 123

Query: 61  LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSR 115
           LD G L++ FP P++ TGED  E H+HGG A+V  +L  +++  N    +R A PGEF+R
Sbjct: 124 LDAGALVLYFPGPKTVTGEDVLELHLHGGPAIVKSVLSSISRTNNPDYTVRYAEPGEFTR 183

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N ++DL + E+L D +S++TE QRRL++ G S  LS  Y QW  +L + R  +EA 
Sbjct: 184 RAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSKRYEQWRHQLLYARGELEAL 243

Query: 176 LDFSEEEDVQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           +DFSE++     +      V   +  L+  I+ HI     GE++RNG K+ +LG  NAGK
Sbjct: 244 IDFSEDQHFDESTEDLVSSVAAQVRALRAQIALHIQNASKGELLRNGIKVALLGAPNAGK 303

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD---------- 282
           SSL N +  ++ AIV+   GTTRD++ + +D+ G+  K+ D AGIR   +          
Sbjct: 304 SSLLNRIVGREAAIVSTEEGTTRDIVDVGVDIGGWYCKLGDMAGIRSEPNDPTGQKKTVV 363

Query: 283 --IVEKEGIKRTFLEVENAD 300
              VE+EGI+R       +D
Sbjct: 364 IGAVEQEGIRRAKARALESD 383



 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 18/93 (19%)

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI----I 405
            L+  +  +   L+    +    +PS  R   H              E D  +DI     
Sbjct: 534 NLQRCLEHLDDFLTQTQPQSQTPMPSSSRQFAH-----------EFPETDMDMDIDIVTA 582

Query: 406 AENLRLASVSLGKITGC---VDVEQLLDIIFSK 435
           AE+LR A+ ++ KITG     DVE +L ++F K
Sbjct: 583 AEHLRSAADTMAKITGRGESGDVEDVLGVVFEK 615


>gi|157781555|gb|ABV72132.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           raffinosus]
          Length = 270

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/271 (33%), Positives = 156/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-----DGRILDKG 64
           +S      AISI+RLSG    ++ + +    KK      S    +G      + +++D+ 
Sbjct: 1   ISPPPGEGAISIVRLSGDRAVEIADSVYNSGKKCLLDVPSHTIHYGHIIDPANQQVVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +L+ + +    RLA PGEF++RAF NG++D
Sbjct: 61  MVTVMRAPKTFTREDIVEINCHGGIVVVNQLLQLILRS-GARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    +++  + G LS L  Q   ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDRAMNVAINQLDGNLSHLIRQLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     +   I + +   K G+I+R G    I+G  N GKSSL N L  ++ 
Sbjct: 180 EELTTQLLLEKAQQVGQQIDALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVT+I GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|242823879|ref|XP_002488148.1| mitochondrial GTPase (Mss1), putative [Talaromyces stipitatus ATCC
           10500]
 gi|218713069|gb|EED12494.1| mitochondrial GTPase (Mss1), putative [Talaromyces stipitatus ATCC
           10500]
          Length = 628

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 122/325 (37%), Positives = 181/325 (55%), Gaps = 31/325 (9%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLD-----GRI 60
           TI+A+ST    +AI+IIR+SGP+C Q+   +C + + P  R A++R  +          +
Sbjct: 83  TIYALSTAPGRAAIAIIRISGPACLQIYRALCPRARDPKQRMATVRALYDPTQAPSPNTL 142

Query: 61  LDK-GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL-------------- 105
           LD   L++ FPSP + TGED  E HVHGG A V  +L  + K  ++              
Sbjct: 143 LDPSALVLYFPSPRTVTGEDVLELHVHGGPATVKAVLNAIEKCNDVIKSEHDNISQSSSF 202

Query: 106 -RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK 164
            R A PGEF+RRAF N  +DL + E+L + +++ETE QRRL++ G +  LS+ Y  W  +
Sbjct: 203 IRYAEPGEFTRRAFMNDVLDLPQIEALGETLNAETEQQRRLAVRGANTTLSARYEDWRQQ 262

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYK 221
           L + R  +EA +DFSE++       + +      +  L+  I  HI     GE++RNG K
Sbjct: 263 LLYARGELEALIDFSEDQHFDESPQELIGSVSAQVAILRQQIRFHIQNASKGELLRNGIK 322

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I +LG  NAGKSSL N +  K+ AIV+   GTTRD++ + +DL G+  KI D AG+R + 
Sbjct: 323 IALLGAPNAGKSSLLNRVVGKEAAIVSTEEGTTRDIVDVGIDLGGWYCKIGDMAGLRSSK 382

Query: 282 DIVEK------EGIKRTFLEVENAD 300
           +  EK      EGI+R       +D
Sbjct: 383 NEREKIGAVELEGIRRAKQRALESD 407



 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 16/94 (17%)

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS------------LNEKDCGLDII--AEN 408
            +       S+    R   +L Q + +LE               +   +  +DI+  AEN
Sbjct: 535 MHDISYWEDSLGVTHRQQSNLKQCLEHLERFLYETKTTENNDTDMVNAESDVDIVTAAEN 594

Query: 409 LRLASVSLGKITGC--VDVEQLLDIIFSKFCIGK 440
           LR A+ SL +ITG    DVE +L ++F KFC+GK
Sbjct: 595 LRFAAESLAQITGRGGADVEDVLGVVFEKFCVGK 628


>gi|317035274|ref|XP_001396578.2| cytokinesis protein sepA [Aspergillus niger CBS 513.88]
          Length = 2210

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 121/320 (37%), Positives = 185/320 (57%), Gaps = 26/320 (8%)

Query: 7    TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLD-----GRI 60
            TI+A+ST +  +AI+++R SGP+C Q+ + +C     P PR A +R  +          +
Sbjct: 1654 TIYALSTASGRAAIAVVRASGPACVQIYKSLCPEAPLPRPRLAVVRTLYDPSQKPSPNTV 1713

Query: 61   LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSR 115
            LD G L++ FP P++ TGED  E H+HGG A+V  +L  +++  N    +R A PGEF+R
Sbjct: 1714 LDAGALVLYFPGPKTVTGEDVLELHLHGGPAIVKSVLSSISRTNNPDYTVRYAEPGEFTR 1773

Query: 116  RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
            RAF N ++DL + E+L D +S++TE QRRL++ G S  LS  Y QW  +L + R  +EA 
Sbjct: 1774 RAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSKRYEQWRHQLLYARGELEAL 1833

Query: 176  LDFSEEEDVQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
            +DFSE++     +      V   +  L+  I+ HI     GE++RNG K+ +LG  NAGK
Sbjct: 1834 IDFSEDQHFDESTEDLVSSVAAQVRALRAQIALHIQNASKGELLRNGIKVALLGAPNAGK 1893

Query: 233  SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD---------- 282
            SSL N +  ++ AIV+   GTTRD++ + +D+ G+  K+ D AGIR   +          
Sbjct: 1894 SSLLNRIVGREAAIVSTEEGTTRDIVDVGVDIGGWYCKLGDMAGIRSEPNDPTGQKKTVV 1953

Query: 283  --IVEKEGIKRTFLEVENAD 300
               VE+EGI+R       +D
Sbjct: 1954 IGAVEQEGIRRAKARALESD 1973



 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 18/98 (18%)

Query: 350  GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI----I 405
             L+  +  +   L+    +    +PS  R   H              E D  +DI     
Sbjct: 2124 NLQRCLEHLDDFLTQTQPQSQTPMPSSSRQFAH-----------EFPETDMDMDIDIVTA 2172

Query: 406  AENLRLASVSLGKITGCV---DVEQLLDIIFSKFCIGK 440
            AE+LR A+ ++ KITG     DVE +L ++F KFC+GK
Sbjct: 2173 AEHLRSAADTMAKITGRGESGDVEDVLGVVFEKFCVGK 2210


>gi|154300747|ref|XP_001550788.1| hypothetical protein BC1G_10673 [Botryotinia fuckeliana B05.10]
 gi|150856421|gb|EDN31613.1| hypothetical protein BC1G_10673 [Botryotinia fuckeliana B05.10]
          Length = 525

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 143/475 (30%), Positives = 237/475 (49%), Gaps = 73/475 (15%)

Query: 39  KKKKPFPRKASLRYFFGLDG---RILD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNG 94
            K  P PR A++R  +        ILD   L++ FP+P + TGED  E HVHGG A V  
Sbjct: 51  SKSIPRPRYAAVRTLYEPANSIPNILDSDALVLYFPAPNTVTGEDVLELHVHGGSATVKA 110

Query: 95  ILEELAKMPNL---RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMS 151
           +L  +++  +    R A PGEF+RRAF+N ++DL + E+L+D +S+ETE QRR ++ G S
Sbjct: 111 VLSTISQCTSAAKIRYAEPGEFTRRAFQNDRLDLAQVEALSDTLSAETEQQRRAAVRGNS 170

Query: 152 GELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK---EVLNDILFLKNDISSHIS 208
           G+L   Y  W ++L + R  +EA +DFSE++      ++    V   +  +   I++H S
Sbjct: 171 GKLGRTYEAWREQLLYARGELEALIDFSEDQHFDESPAELLSNVTAQVETMLELIAAHES 230

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
               GE+++ G +I +LG  NAGKSSL N +  ++ +IV+   GTTRD++ + LD+ GYL
Sbjct: 231 ASHRGELLKKGIRIALLGPPNAGKSSLLNQIVGREASIVSQEAGTTRDIVEVGLDIRGYL 290

Query: 269 VKISDTAGIRETDDIV------------EKEGIKRTFLEVENADLILLLK-----EINSK 311
              +DTAG+R     +            E+EGI+R   +   +DLI+ L      +I + 
Sbjct: 291 CTFADTAGLRTQASQIGSGNNDSIIGDIEREGIRRAKSKANESDLIVALASIEWSDIRNG 350

Query: 312 KEISF--------PKNIDFIFIGTKSD-------------LYSTYTEEYDHLI------S 344
            EI +         +   F+ +  KSD                +   ++D         S
Sbjct: 351 WEIRYDQETFEIAARASKFMIVINKSDSVTPEILSELINDFKESQKGKFDQYPVPLMSIS 410

Query: 345 SFTGEG------LEELINKIKSILSNKF---KKLPFSIPSHKRHLYHLSQTVRYLEMA-- 393
               +G      +   ++++ S+ SN      +L   +   +R    L+    +L     
Sbjct: 411 CKDAQGLTNKGSIGHFVDEMVSVFSNMTSLPTELVDLLGVTERQRQLLTACSAHLLDFMN 470

Query: 394 -----SLNEKDCGLDIIAENLRLASVSLGKITGC---VDVEQLLDIIFSKFCIGK 440
                  ++++  + + AE+LR A+  L +ITG     DVE++L ++F KFC+GK
Sbjct: 471 EAQEHVDHDQEADIVLAAEHLRSAANCLSRITGRGEAGDVEEVLGVVFEKFCVGK 525


>gi|157781589|gb|ABV72149.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           villorum]
          Length = 270

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 95/271 (35%), Positives = 158/271 (58%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     + + + +  KK      S    +G        +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAVAIADKVYRCGKKSLLEVPSHTIHYGHIIDPKTQQLVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ +  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF++RAF NG++D
Sbjct: 61  MISIMLAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LSSL      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMGLALNQLDGNLSSLIRSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +++ +L     ++  I   ++  K G+++R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTRLLLEKATMIQQQIQQLLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHLLQEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|257890523|ref|ZP_05670176.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,410]
 gi|257826883|gb|EEV53509.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,410]
          Length = 339

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 98/339 (28%), Positives = 180/339 (53%), Gaps = 17/339 (5%)

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            NG++DL +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++D+
Sbjct: 1   MNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNIDY 60

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E +DV+  ++K +L     ++  I + ++  K G+++R G    I+G  N GKSSL N 
Sbjct: 61  PEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLLNH 120

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L +++ AIVTDI GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  
Sbjct: 121 LLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKALAE 180

Query: 299 ADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE---------EYDHLI 343
           ADLILL+           ++ +     +  I +  K+DL +   +         E    I
Sbjct: 181 ADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEPVFSI 240

Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCG 401
           S    +GL+ L + I  +    +  +   +  S+ RH+  L +    LE      +    
Sbjct: 241 SVAKNDGLDRLESAISDLFFSGETGERDATYVSNTRHIALLEKASLSLEEVIAGIDSGMP 300

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +D++  ++      LG++ G    ++L+  +FS+FC+GK
Sbjct: 301 VDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 339


>gi|83309100|ref|YP_419364.1| GTPase [Magnetospirillum magneticum AMB-1]
 gi|82943941|dbj|BAE48805.1| Predicted GTPase [Magnetospirillum magneticum AMB-1]
          Length = 365

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 133/370 (35%), Positives = 217/370 (58%), Gaps = 14/370 (3%)

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
            AE H+HGG AV   +   L ++  LR A PGEFSRRAF NGK+DL  AE++ADL+ +ET
Sbjct: 1   MAELHLHGGRAVAAALTARLGEL-GLRPAEPGEFSRRAFLNGKLDLTRAEAIADLVDAET 59

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
             QRR ++  + G L+ L   W   L    + +EA +DF++ ED+ +   ++ + ++  L
Sbjct: 60  AAQRRQALRQLDGGLAGLVEGWRSALVRAMAHLEAVIDFAD-EDIPDTLLEQSVGEVRSL 118

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           + ++  H+ + + GE +R+G  I ILG  NAGKSSL N LA ++ AIV+   GTTRDV+ 
Sbjct: 119 RREMEVHLDERRNGERLRDGIHITILGAPNAGKSSLLNRLAGREAAIVSAQAGTTRDVIE 178

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK- 318
           + LDL G+ V ++DTAG+R++   +E EG++R       ADL L + +      +     
Sbjct: 179 VHLDLGGWPVIVADTAGLRDSACEIESEGVRRAADRAAKADLRLCVFDGTLYPNLDAATL 238

Query: 319 ---NIDFIFIGTKSDLY-----STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
              +   + +  K DL      ++        +S+  GEG+++L+ ++  ++ ++F    
Sbjct: 239 EMIDDATLVVLNKRDLMTGETPASINGRPVLTLSAKAGEGVDDLVAELARVVESRFAMGS 298

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
             + + +RH   +++ V  L      +   G+++ AE+LRLA+ SLG+ITG VDVE++LD
Sbjct: 299 APVLTRERHRVAVAEAVAALSRF---DPGLGIEMAAEDLRLAARSLGRITGRVDVEEILD 355

Query: 431 IIFSKFCIGK 440
           +IF +FCIGK
Sbjct: 356 VIFHEFCIGK 365


>gi|157781571|gb|ABV72140.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           moraviensis]
          Length = 270

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 97/271 (35%), Positives = 157/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     + + + +   K      +    +G      D  +LD+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAIAIADKVYRSGSKQLLDVPTHTIHYGHILDPKDESLLDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +  +L      RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPKTFTREDVVEINCHGGIVVVNQL-LQLLLREGARLAEPGEFTKRAFLNGRMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    ++++ + G LSSL      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDRAMHVALDQLDGNLSSLIRSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTKLLLEKAGFVKAQIEGLLTTAKQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|157781569|gb|ABV72139.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           haemoperoxidus]
          Length = 270

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 98/271 (36%), Positives = 157/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     + + + +   K      S    +G      D  +LD+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDEAVAIADKVYRSGSKQLLDVPSHTIHYGHILDPKDDSLLDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +  +L      RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPKTFTREDVVEINCHGGIVVVNQL-LQLLLREGARLAEPGEFTKRAFLNGRMD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    ++++ + G LSSL      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDRAMHVALDQLDGNLSSLIRSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  ++K +L    F+K  I   ++  K G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EELTTKLLLEKAGFVKAQIEGLLTTAKQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270


>gi|124516564|gb|EAY58072.1| TRNA modification GTPase TrmE [Leptospirillum rubarum]
          Length = 445

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 128/447 (28%), Positives = 206/447 (46%), Gaps = 15/447 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEF--ICKKKKPFPRKASLRYFFGLDGRILDK 63
           + I + +T  +   + IIRLSG   F       I   ++P PR+         DG+ +D 
Sbjct: 2   DPIVSAATRLISQPVGIIRLSGNGLFPKFSTLMIPPMEEPEPRRIYRIRVRDRDGQPIDD 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ F SP S TGED  E  +HG    +  I+         R A PGEF  RA+ + KI
Sbjct: 62  GLLLYFKSPHSLTGEDVLELQLHGNPHSLRKIISHAI-CLGARQARPGEFLYRAYLHHKI 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
            LL+AESL  LI + +  Q R   +  SG+  S      ++   +       LD SE++ 
Sbjct: 121 SLLKAESLNKLIQAPSFEQYRSQFQEYSGQRRSPIDLLREQWMDLIGLFYVALDHSEDDI 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V       +L  I  +   I  +    +  +    G+ ++I G  N+GKSSLFN L    
Sbjct: 181 V--VEKDLILQRIQDILESIRLYRKAYRHSKKRWKGFSVLITGPVNSGKSSLFNRLLGDS 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            A+V+DIPGTTRD+L   +  E   + + D+AGIR+T D +EK+GI+R   E+ +  L+L
Sbjct: 239 RALVSDIPGTTRDLLEGRISSEFGDIILLDSAGIRKTGDDIEKQGIRRAIKEINDVSLVL 298

Query: 304 LL--KEINSKKEISF-PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
            +   +++S  EI    +    + +  K DL        D  +SS T +G+  L   ++ 
Sbjct: 299 WVNSPDMDSNPEIVIGKRKTGIVRVWNKCDLRPAGKGHSDFEVSSRTRKGISRLYRFLEE 358

Query: 361 ILSNKFKKLPFSI-------PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
              + ++              S  R    L +  ++L     + +    +I+  +L   +
Sbjct: 359 KAQSYYQDENEEEGNLLEGDLSSHRQYLFLDRLAKHLVSLRDSLEQRSWEILLHDLERYN 418

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +   +G V  + + D +F  FCIGK
Sbjct: 419 QEIQLASGLVTHQMIYDRVFQSFCIGK 445


>gi|157781613|gb|ABV72161.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           cecorum]
          Length = 270

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 96/271 (35%), Positives = 156/271 (57%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFGLDGR---ILDKG 64
           +ST     AIS++RLSG    ++ + I    KKK       ++ Y    D +    LD+ 
Sbjct: 1   ISTAPGEGAISMVRLSGSQALEIADEIFVAGKKKLSQVDSHTIHYGHIYDDKREGFLDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGG+ V N IL+ L      RLA PGEF++RAF NG+ID
Sbjct: 61  MVSVLKAPKTFTREDIIEINCHGGMVVTNQILQ-LVLRKGARLAEPGEFTKRAFLNGRID 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+   +++ + + G LS+L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIQAKTDQSMQMAYQQLEGRLSTLIKSLRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +S+ +L     ++  I   +     G+I+R G +  I+G  N GKSSL N L  ++ 
Sbjct: 180 EEMTSQLMLTTAKHIEEKIEQLLKTATQGKILREGLQTAIIGRPNVGKSSLLNYLLDEEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTDI GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDIAGTTRDVIEEYVNVNGVPLKLIDTA 270


>gi|148555754|ref|YP_001263336.1| tRNA modification GTPase TrmE [Sphingomonas wittichii RW1]
 gi|205415807|sp|A5VA82|MNME_SPHWW RecName: Full=tRNA modification GTPase mnmE
 gi|148500944|gb|ABQ69198.1| tRNA modification GTPase trmE [Sphingomonas wittichii RW1]
          Length = 440

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 160/440 (36%), Positives = 241/440 (54%), Gaps = 18/440 (4%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDG-RILD 62
            +TIFA+S+GA P+ ++++R+SGP      + +   + +P  R+ASLR     DG  +LD
Sbjct: 15  SDTIFALSSGAPPAGVAVVRISGPMAGVAIDRLTGSRPRPAARRASLRALTNPDGGALLD 74

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           + LL+  P P + TGED AE H+HGG AV   +L  L ++P LR A  GEF+RRAFE G+
Sbjct: 75  RALLLWLPGPGTATGEDMAELHLHGGRAVTAAVLAALGRLPGLRPATAGEFTRRAFETGR 134

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           IDL EAE+LADL+++ETE QRR +M    G LS     W  ++  + + +EA LDFS+EE
Sbjct: 135 IDLNEAEALADLLAAETEAQRRNAMLLAGGALSRALEDWQHRVLSLAARLEAQLDFSDEE 194

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLG-EIIRNGYKIVILGHSNAGKSSLFNALAK 241
           DV                  +     +G+L  E +R+G ++V+ G  NAGKS+L NALA 
Sbjct: 195 DVAPLDPGFAAELAALDAEVVR---WRGRLPVERLRDGVRVVLAGPPNAGKSTLLNALAG 251

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENAD 300
           ++ AIVT I GTTRD++   + L G    ++DTAG+ E T D VE  GI R    +  AD
Sbjct: 252 REAAIVTPIAGTTRDLIEAPVALGGIPFLLTDTAGLHEGTGDAVEAIGIDRAGQAIAAAD 311

Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           ++L L +       S         IG ++D  +  +  +D L+S+ +G G+++L+  +  
Sbjct: 312 IVLWLGDPGCAPAGSV-------RIGAQADRRTHDSAAHDLLVSARSGTGMDDLVALLLD 364

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
                            R    L +    L +A    ++    ++AE LRLA  ++  +T
Sbjct: 365 RA-AGLLPGEGEAALSARQRAALDRLGEALALA---REEGDPILVAEGLRLARAAIDALT 420

Query: 421 GCVDVEQLLDIIFSKFCIGK 440
           G    E +LD +F +FCIGK
Sbjct: 421 GRAGTEDMLDGLFGRFCIGK 440


>gi|289613219|emb|CBI59813.1| unnamed protein product [Sordaria macrospora]
          Length = 602

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 155/542 (28%), Positives = 241/542 (44%), Gaps = 116/542 (21%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-------- 54
             +TI+A+S+G+  + I++              +C  K  P PR A++R           
Sbjct: 72  TNDTIYALSSGSGRAGIAV-----------YNSLCPTKPVPKPRYAAVRTLTEPTAPGKE 120

Query: 55  ---GLDGRILD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-----L 105
                +  +LD   L++ FP P++ TGED  E HVHGG A V  +L  + K  +     +
Sbjct: 121 VSSAANANVLDTDALVLYFPGPKTVTGEDILELHVHGGSATVKAVLSAIPKSESTSSGTI 180

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           R A  GEF++RAF N +IDL + E+L D +S+ETE QRR ++ G SG L   Y  W ++L
Sbjct: 181 RYAEQGEFTKRAFLNNRIDLAQVEALGDTLSAETEQQRRAAIRGTSGVLGKTYESWREQL 240

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDI---LFLKNDISSHISQGKLGEIIRNGYKI 222
              R  IEA +DFSE++      ++ + N       +   I  H    +  E++RNG +I
Sbjct: 241 LLARGEIEALIDFSEDQHFDESPTELLRNVTHLVKGILRSIKLHEMGSQRSELLRNGIRI 300

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            +LG  N GKSSL N +  ++ +IV+   GTTRD++   LD+ GYL   +DTAGIR    
Sbjct: 301 ALLGPPNVGKSSLMNLIVGREASIVSSEAGTTRDIVEASLDIRGYLCSFADTAGIRTRSS 360

Query: 283 I-------------VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG--- 326
           +             +E+EGI+R   +  ++D+I++L  +      S+  N D   +    
Sbjct: 361 LLPAEQKEEAPIGKIEEEGIRRARQKALDSDVIIVLASVEPHTNNSYRLNYDLSTLHLAS 420

Query: 327 ---------TKS-----------------DLYSTYTEEY-------DHLISSFTGE---- 349
                     KS                 D+ ST   E          LIS  T E    
Sbjct: 421 SAPESLLAINKSETVPPDVLAQLIQSFKNDVLSTALPENSPLKIKDPILISCRTAEQQQS 480

Query: 350 ----------GLEELINKIKSILSNKF---KKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                      +  LI+++ S  ++     + +   +    R    L Q    LE     
Sbjct: 481 LKDTDDKDPGKIHHLISRLSSSFADLTAIPQDMEHLLGVTARQNELLGQCRDALEDFMAE 540

Query: 397 EK---------------DCGLDIIAENLRLASVSLGKITGC---VDVEQLLDIIFSKFCI 438
                            +  + + AE+LR+A+  L  ITG     DVE++L +IF KFC+
Sbjct: 541 ANPTTFEGEGMGIGEEVEADIVLAAEHLRVAAGKLAAITGKGEAGDVEEVLGVIFEKFCV 600

Query: 439 GK 440
           GK
Sbjct: 601 GK 602


>gi|323307689|gb|EGA60952.1| Mss1p [Saccharomyces cerevisiae FostersO]
          Length = 484

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 142/436 (32%), Positives = 220/436 (50%), Gaps = 52/436 (11%)

Query: 2   NHEKETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDGR 59
             ++ TI+A+ST A   SAI+IIR+SG     +   +       P RK  LR  +     
Sbjct: 33  TFQQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKXILRNIYSPSSC 92

Query: 60  ------------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--- 104
                       +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  + +   
Sbjct: 93  SVKPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSS 152

Query: 105 ---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQW 161
              +R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W
Sbjct: 153 GKDIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENW 212

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF----LKNDISSHISQGKLGEIIR 217
            + +    + + A +DF+++   +  ++ E+ +D+      L++ I + + + +   I++
Sbjct: 213 RETIIENMAQLTAIIDFADDNSQEIQNTDEIFHDVEKNIICLRDQIVTFMQKVEKSTILQ 272

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAGI
Sbjct: 273 NGIKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGI 332

Query: 278 RET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----------NIDFIFI 325
           RE   D +E  GI+R   +   +DL L + +     ++               N   I +
Sbjct: 333 REKSSDKIEMLGIERAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIV 392

Query: 326 GTKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             KSDL S                ++     +S  T EG+E LI+ + S   +  +    
Sbjct: 393 VNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLISTLTSNFESLSQSSAD 452

Query: 372 S--IPSHKRHLYHLSQ 385
           +  +   KR    L +
Sbjct: 453 ASPVIVSKRVSEILKK 468


>gi|208435318|ref|YP_002266984.1| putative thiophene/furanoxidation protein [Helicobacter pylori G27]
 gi|208433247|gb|ACI28118.1| putative thiophene/furanoxidation protein [Helicobacter pylori G27]
          Length = 404

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 120/401 (29%), Positives = 195/401 (48%), Gaps = 20/401 (4%)

Query: 57  DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           +G +LDK L+I F +P SFTGED  E   HG   +   IL+    +   RLA  GEFS++
Sbjct: 7   NGVLLDKALVIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKK 65

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AF N K+DL E E+   LI  E E         + GEL     +  + L  + +  E  +
Sbjct: 66  AFLNHKMDLSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLI 125

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D+SE ED+ +     V  ++          +      +    G+ + I+G  NAGKSSL 
Sbjct: 126 DYSE-EDIPSDFLDGVSQNLEKQIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLL 184

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NA+  ++ A+V+DI GTTRD +   ++L+G+ V++ DTAGIRE+ D +E+ GI+++   +
Sbjct: 185 NAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSL 244

Query: 297 ENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           EN D+IL + +++   E                 I +  K+DL      E          
Sbjct: 245 ENCDIILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKNDLAPKLELEVLKSYLKIPY 304

Query: 349 EGLEELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC---- 400
             LE      ++ L +  +K+    P     +K  L  L+Q    LE A +  ++     
Sbjct: 305 ALLETNTLNSRACLKDLSQKISEFFPKLDTQNKLLLTSLAQ-KTALENAIIELQNAKNHL 363

Query: 401 -GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L++ + ++  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 364 ETLELFSYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 404


>gi|257461373|ref|ZP_05626469.1| tRNA modification GTPase TrmE [Campylobacter gracilis RM3268]
 gi|257441096|gb|EEV16243.1| tRNA modification GTPase TrmE [Campylobacter gracilis RM3268]
          Length = 582

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 102/340 (30%), Positives = 169/340 (49%), Gaps = 11/340 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
            ETI A++T      I I+R+SG     +   +  +    PR A+L   F   G    + 
Sbjct: 2   SETIAAIATAHGIGGICIVRISGEEALSIALSLSHRSSLRPRYATLVNLFDASGEAFGEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +LI F +P SFTGED  E   HGG    +  L+ +  +   R+ANPGEFS+RAF NGK+D
Sbjct: 62  ILIYFKAPHSFTGEDVVEVQTHGGFTASSLALDAVLAL-GARIANPGEFSKRAFLNGKMD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE+++DLI+S ++   ++    + GEL+         L    +F+E  +D++E +D+
Sbjct: 121 LSKAEAISDLINSRSQSAAKILARNLRGELADFVANLRAALVKTLAFVEVCIDYAE-DDL 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +   +     +      +       +    +  G+K+ I+G  N GKSS+ N++     
Sbjct: 180 PSDVLQNSQEMLSQNIASLEKITRISRSRRGLIEGFKVAIVGKPNVGKSSILNSMLSFSR 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV+D  GTTRD++   L +  +L++I DTAGIR +   +E  GI  +      AD+IL 
Sbjct: 240 AIVSDEAGTTRDLIEESLQIGTHLIRIVDTAGIRHSGSKLESIGISYSLRAASEADVILA 299

Query: 305 LKEINSKKEISFP---------KNIDFIFIGTKSDLYSTY 335
           + + + + +             K    I++  K DL   +
Sbjct: 300 VFDASREWDAEDAQILKILREQKGKKIIYVLNKCDLLRKF 339



 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
            EG+++++  ++S L+   +     + S++R +      +  L+ AS       L++ A 
Sbjct: 492 NEGVDQILTALESYLN--SQNFDGLMLSNERQILSCESALAALKNASERLACGELELFAF 549

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  A  ++ +I+   + +++LD +FS FC+GK
Sbjct: 550 EINRAIEAIARISRPFERDEILDEMFSNFCLGK 582


>gi|206603436|gb|EDZ39916.1| tRNA modification GTPase TrmE [Leptospirillum sp. Group II '5-way
           CG']
          Length = 445

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 127/447 (28%), Positives = 211/447 (47%), Gaps = 15/447 (3%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFGLDGRILDK 63
           + I + +T  +   + IIRLSG   F     +     ++P PR+        +DG+ +D 
Sbjct: 2   DPIVSAATRLISQPVGIIRLSGNGLFPKFSTLMVPPMEEPDPRRVYRIQVRDIDGQTIDD 61

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           GLL+ F SP S TGED  E  +HG    +  I+         R A PGEF  RA+ + KI
Sbjct: 62  GLLLYFKSPHSLTGEDVLELQLHGNPHSLRKIISHAI-CLGARQARPGEFLYRAYLHHKI 120

Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
            LL+AESL  LI + +    R   +  SG+  S      D+   +       LD S+++ 
Sbjct: 121 SLLKAESLNKLIQAPSFEHYRSQFQEYSGQKESPIEILRDQWMDLIGLFYVALDHSDDDI 180

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V     + ++  I  + + I  +       +    G+ ++I G  N+GKSSLFN L    
Sbjct: 181 V--IEKEMIVQRIQDILDSIRLYRKAYMRAKKRWRGFSVLITGPVNSGKSSLFNRLLGDS 238

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            A+V+DIPGTTRD+L   +  E   + + D+AG R+T D +EK+GI+R   E ++  LIL
Sbjct: 239 RALVSDIPGTTRDLLEGRISSEYGDIILLDSAGFRKTGDDIEKQGIRRAIKESKDVSLIL 298

Query: 304 LL--KEINSKKEISF-PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
            +   E+N+  EI    +    + +  K DL      + D  +SS T +G+  L + ++ 
Sbjct: 299 WVNSPEMNTNPEIVIGKRKSGILRVWNKCDLRPAGIGQADFEVSSRTRKGISRLYHFLEE 358

Query: 361 ILSNKFK-------KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
              + ++        L   + S  R    L +  ++L     + ++   +I+  +L   +
Sbjct: 359 KARSYYQEESEEEGNLMEGVLSSHRQYLFLDRLAKHLVSLKDSLENRSWEILLHDLERYN 418

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +   +G V  + + D +F  FCIGK
Sbjct: 419 QEIQLASGLVTHQMIYDRVFQSFCIGK 445


>gi|157781621|gb|ABV72165.1| GTP-binding thiophene and furan oxidation protein [Enterococcus
           italicus DSM 15952]
          Length = 270

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 92/271 (33%), Positives = 154/271 (56%), Gaps = 7/271 (2%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL-----DGRILDKG 64
           +ST     AISI+RLSG     +   + +   K      S    +G        +++D+ 
Sbjct: 1   ISTPPGEGAISIVRLSGDQAIAIAANVFQAGTKQLAAVPSHTIHYGHIIDPKTEQLVDEV 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           ++ V  +P++FT ED  E + HGGI VVN +  +L      RLA PGEF++RAF NG++D
Sbjct: 61  MVSVMRAPKTFTREDVVEINCHGGIVVVNQL-LQLLLRQGARLAEPGEFTKRAFLNGRVD 119

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L +AE++ DLI ++T+    L++  + G LS+L      ++    + +E ++D+ E +DV
Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLALNQLDGRLSNLIRALRQEILETLAQVEVNIDYPEYDDV 179

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  +S+ ++     ++  I + +   K G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 180 EALTSQLLVEKAHHVQAQIQALLQTAKQGKILREGLNTTIIGRPNVGKSSLLNHLLREEK 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           AIVTD+ GTTRDV+   +++ G  +K+ DTA
Sbjct: 240 AIVTDVAGTTRDVIEEYVNVRGVPLKLVDTA 270


>gi|119467792|ref|XP_001257702.1| mitochondrial GTPase (Mss1), putative [Neosartorya fischeri NRRL
           181]
 gi|119405854|gb|EAW15805.1| mitochondrial GTPase (Mss1), putative [Neosartorya fischeri NRRL
           181]
          Length = 604

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 178/315 (56%), Gaps = 25/315 (7%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR-----I 60
           TI+A+ST    +AI+++R+SG +C Q+   +C     P  R A++R  +          +
Sbjct: 66  TIYALSTAPGRAAIAVVRVSGSACVQIYRALCPSAPLPRARVAAVRTLYDPTQEPSANTV 125

Query: 61  LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSR 115
           LD G L++ FP P++ TGED  E H+HGG A+V  +L  +A+       +R A PGEF+R
Sbjct: 126 LDAGALVLYFPGPKTVTGEDVLELHLHGGPAIVKSVLAAIARSNRPESLVRYAEPGEFTR 185

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N ++DL + E+L D ++++TE QRRL++ G S  LS  Y  W  +L + R  +EA 
Sbjct: 186 RAFMNNRLDLPQIEALGDTLTADTEQQRRLAVRGASDALSRRYESWRQQLLYARGELEAL 245

Query: 176 LDFSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           +DFSE++       + V +    +  L+  +  HI     GE++RNG KI +LG  NAGK
Sbjct: 246 IDFSEDQYFDESPEEFVRSVAGQVRALQTQLRLHIENASKGELLRNGIKIALLGAPNAGK 305

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD----------- 281
           SSL N +  K+ AIV+   GTTRD++ + +DL G+  K+ D AGIR              
Sbjct: 306 SSLLNRIVGKEAAIVSTEEGTTRDIVDVGVDLGGWYCKLGDMAGIRSEKSASTGQETAVI 365

Query: 282 DIVEKEGIKRTFLEV 296
             VEKEGI+R     
Sbjct: 366 GAVEKEGIRRARTRA 380



 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 21/87 (24%)

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLN------------------EKDCGLDIIAENLRL 411
             S+    R   +L + +++L+                       E +  + + AE+LR 
Sbjct: 518 EDSLGVTHRQSSNLQRCMQHLDDFLNETTQTQTLQTPGYAHDRNIETEIDVVMAAEHLRF 577

Query: 412 ASVSLGKITGC---VDVEQLLDIIFSK 435
           A+ +L KITG     DVE +L ++F K
Sbjct: 578 AADTLAKITGKGESGDVEDVLGVVFEK 604


>gi|295698382|ref|YP_003603037.1| tRNA modification GTPase TrmE [Candidatus Riesia pediculicola USDA]
 gi|291157050|gb|ADD79495.1| tRNA modification GTPase TrmE [Candidatus Riesia pediculicola USDA]
          Length = 465

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 147/459 (32%), Positives = 235/459 (51%), Gaps = 28/459 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A ST      I I+R+SG    QVC+ I K+K   PR A+   F+G   +++D G
Sbjct: 12  QDTIVAQSTPPGIGGIGILRISGTEIDQVCQKILKRKL-QPRYATYLPFYGEFDQVIDHG 70

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + I F  P SFTGE+  E H HGG  +++ ++E + K P +R+A PGEF++RAF N KID
Sbjct: 71  IAIYFIKPNSFTGENVLELHAHGGQIIIDILMENILKFPRIRVAYPGEFTKRAFLNNKID 130

Query: 125 LLEAESLADLISSETEMQRRLSMEGMS--GELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           L++AES+ +LI + T    R S++ +    + S         +  I+S +E  ++F EE 
Sbjct: 131 LIQAESICELIHANTREAARNSVKYVEKNSKFSKNLFSIKKMVEEIQSLVEIKINFPEEN 190

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
              +FS   +   I  +   + + I        +    KI I+G  N+GKSSL N L++K
Sbjct: 191 L--SFSKDNLSCKIQDVILKLENLIDGLIYNSNVSEFIKISIVGKPNSGKSSLMNILSEK 248

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + +IVT I GTTRD++  ++ + G  V+ISDTAGIR + + +E+ GIK+   E++ ++ +
Sbjct: 249 EASIVTSIRGTTRDIIKENIHIHGVSVQISDTAGIRRSKNEIERIGIKKALKELKESEHV 308

Query: 303 LLLKE-------INSKKEI------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
           L + E        + K  I      +F  +  F  I  K D+                 +
Sbjct: 309 LYVTEDVICKNFFSEKNNILSILKKNFSSSKSFTIIKNKIDIDNLSSGIKVIEGCTVIFL 368

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
           SS T +GLE L   +K IL N+       +  H+     L +          N  +  ++
Sbjct: 369 SSKTKDGLEMLKTHLKKILQNRNHIENKFLSKHR--YRLLLKKSLKHLKKIENVSNYSIE 426

Query: 404 IIAENLRLASVSLGKIT--GCVDVEQLLDIIFSKFCIGK 440
           I+AE ++L +  L +I        + +L+ IFS FCIGK
Sbjct: 427 ILAEEIKLTNEYLDQIFDGRRYYPQNMLNDIFSNFCIGK 465


>gi|320102561|ref|YP_004178152.1| GTP-binding protein TrmE [Isosphaera pallida ATCC 43644]
 gi|319749843|gb|ADV61603.1| GTP-binding protein TrmE [Isosphaera pallida ATCC 43644]
          Length = 526

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 136/517 (26%), Positives = 230/517 (44%), Gaps = 81/517 (15%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVC--EFICKKKKPFPRKASLR----------Y 52
           ++TI A+S+   P+A  I+R+SGP  + V    F  +     P  A+            +
Sbjct: 10  EDTIAAISSPHGPAARGILRISGPRAWSVALARFTPRAHVGDPVGATSTVSWTPGVHAGW 69

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA------------ 100
           F  L+        L +  +P +FTG+D AE+H+ G   ++N  LE +             
Sbjct: 70  FHALEIATPIPAELTLGRAPRTFTGQDLAEWHLPGSEPLLNAALETILTENVDVSSELVA 129

Query: 101 -----------------KMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143
                            +   +R A PGEF+ RA+  GK+DL++AE++ +++ + T  + 
Sbjct: 130 PNLGEFSNPEATQAFSTRRGRVRSARPGEFTLRAYLAGKLDLIQAEAVWEVVHATTPQRL 189

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
           R +++ ++G L S   +    L  + + IEA+LDF +E DV      +++  +   +  +
Sbjct: 190 RAALDRLAGGLGSPLLETRSDLLDVLAIIEANLDFVDEADVDPVELAQLVAVLDHQRERL 249

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
              + +G+  E      ++VI+G  NAGKS LFNAL   D A+V+ + GTTRD L   L 
Sbjct: 250 RQLLERGRARERDGRVPRVVIVGAPNAGKSCLFNALLGSDRALVSPVVGTTRDYLAEPLQ 309

Query: 264 LEG---------YLVKISDTAG------IRETDDIVEKE--------GIKRTFLE----V 296
           L           ++V++ DTAG      + +TD     E           +        +
Sbjct: 310 LPADESDPASEPFVVELIDTAGDERLETLWDTDPPPHSEPRPAPLESIRHQADAARRSQL 369

Query: 297 ENADLIL--LLKEINSKKEISFPK---NIDFIFIGTKSDLYSTYT-------EEYDHLIS 344
           E ADL+L     +     E+   +     D + +GTK DL   +        +  D + S
Sbjct: 370 EAADLVLRCWAHDAPPTPELIAWRPGPGQDLLEVGTKGDLDQRHCASEHRHHQVLDVITS 429

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403
           + TGEGL+EL   I   L+++ +          R    L   +  L+ A+    +   L+
Sbjct: 430 TATGEGLKELRRLIVRRLADRIQDEDEEAALPARVTEGLRNALAALDRAAWAVAQGRDLE 489

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + A +L  A   LG + G    + +LD IF +FCIGK
Sbjct: 490 LAAVDLAQAINDLGAVVGIEVEDDILDRIFQRFCIGK 526


>gi|164657303|ref|XP_001729778.1| hypothetical protein MGL_3322 [Malassezia globosa CBS 7966]
 gi|159103671|gb|EDP42564.1| hypothetical protein MGL_3322 [Malassezia globosa CBS 7966]
          Length = 444

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 134/440 (30%), Positives = 213/440 (48%), Gaps = 51/440 (11%)

Query: 52  YFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL------AKMPNL 105
                   +LD  L + FP   SFTG+ + E H+HG  AVV  +LE L          ++
Sbjct: 5   IIHPQTQELLDDALAVYFPHGRSFTGQATLELHLHGSPAVVRDVLEALDAMRTVLSTRDM 64

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           R A PGEF+RRAFE+G++DL   E+L  L+ +ET  QRRL+     G  + LY +   +L
Sbjct: 65  RPALPGEFTRRAFEHGRLDLTACEALDSLLHAETSQQRRLAQWAAQGYQAQLYDRLYAQL 124

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHIS------QGKLGEIIRNG 219
               S +EA LDFS+E+DV       V   I  ++  ++S +       +    + +  G
Sbjct: 125 VQAMSQMEAMLDFSDEDDVNEHLWISVHETIHGMRQYLASELQLNTPPTRRSYADAVMQG 184

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I + G  NAGKSSL N L ++D AIVT   GTTRDVL + ++L GY V ++DTAG+R 
Sbjct: 185 VRIALYGRPNAGKSSLLNRLVRRDAAIVTPYAGTTRDVLEVCMELAGYRVTLADTAGVRA 244

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL---------------------------KEINSKK 312
           + D VE+ G++RT   V  AD+ +L+                            ++ +K 
Sbjct: 245 SQDAVEQIGVERTQAYVAEADMCVLVCTPQDFQHDLPPAGPCRIPAATLERLGVQMQAKP 304

Query: 313 EISFPKNIDFIF---------IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
            +     +D  +           +K        E +    S     G++ L+N++ S ++
Sbjct: 305 VLILINKMDECWDIGGDHTSSPLSKGRCDHEGVECHVWHASVLHDVGMDLLMNELGSHVA 364

Query: 364 NKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
             +     ++P  +  RH + L   V  L+      +   L ++AE LR A+  L ++TG
Sbjct: 365 RMYDTNQVTMPLVTQARHRHILMDVVACLDTVLATRESPDLVVVAEELRHAAHLLAQVTG 424

Query: 422 C-VDVEQLLDIIFSKFCIGK 440
             +  + +L  IF++FCIGK
Sbjct: 425 RTITSDTVLGEIFARFCIGK 444


>gi|302660640|ref|XP_003021997.1| hypothetical protein TRV_03891 [Trichophyton verrucosum HKI 0517]
 gi|291185921|gb|EFE41379.1| hypothetical protein TRV_03891 [Trichophyton verrucosum HKI 0517]
          Length = 594

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 122/323 (37%), Positives = 181/323 (56%), Gaps = 33/323 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRI----- 60
           TI+A+ST    +AI+IIR+SGP C  +   +C  +K P PR A+LR  +     +     
Sbjct: 46  TIYALSTAPGRAAIAIIRISGPDCIPIYNALCPNRKLPKPRFAALRTIYEPGKPVSADNA 105

Query: 61  LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--------LRLANPG 111
           LD G L+  FP+P + TGED  E HVHGG AV+  IL  + K  +        +R A PG
Sbjct: 106 LDSGALVFHFPAPNTVTGEDVLELHVHGGPAVIKSILSAIPKCASPGDAPSASIRYAEPG 165

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+RRAF N ++DL + E+L + ++++TE QRRL++ G +  LS+ Y QW  +L + R  
Sbjct: 166 EFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQWRKQLLYARGE 225

Query: 172 IEADLDFSEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           +EA +DFSE++         +      +  L + I+ HI     GE++R+G K+ +LG  
Sbjct: 226 LEALIDFSEDQHFDESVDDFISSVTGQVDSLLHQINLHIKNASKGELLRSGIKVALLGAP 285

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---------- 278
           NAGKSSL N +  +D AIV+   GTTRD++ + +DL G+L K  D AG+R          
Sbjct: 286 NAGKSSLLNQIVGRDAAIVSSEEGTTRDIVDVGIDLGGWLCKFGDMAGLRSKLSQSQIPA 345

Query: 279 -----ETDDIVEKEGIKRTFLEV 296
                 T   +E+EGI+R     
Sbjct: 346 QGHVFSTVGKIEEEGIRRAKARA 368



 Score = 47.9 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 397 EKDCGLDIIAENLRLASVSLGKITGC---VDVEQLLDIIFSK 435
           EKD  + + AE+LR A+ SL KITG     DVE +L ++F K
Sbjct: 553 EKDVDIVMAAEHLRFAAESLSKITGRGEGGDVESVLGVVFEK 594


>gi|323303561|gb|EGA57352.1| Mss1p [Saccharomyces cerevisiae FostersB]
          Length = 413

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 197/368 (53%), Gaps = 36/368 (9%)

Query: 2   NHEKETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDGR 59
             ++ TI+A+ST A   SAI+IIR+SG     +   +       P RK  LR  +     
Sbjct: 33  TFQQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKXILRNIYSPSSC 92

Query: 60  ------------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--- 104
                       +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  + +   
Sbjct: 93  SVKPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSS 152

Query: 105 ---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQW 161
              +R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W
Sbjct: 153 GKDIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENW 212

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF----LKNDISSHISQGKLGEIIR 217
            + +      + A +DF+++   +  ++ E+ +D+      L++ I + + + +   I++
Sbjct: 213 RETIIENMXQLTAIIDFADDNSQEIQNTDEIFHDVEKNIICLRDQIVTFMQKVEKSTILQ 272

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG K+V+LG  N GKSSL N+L   D++IV+DIPGTTRD +   +++ GY V I DTAGI
Sbjct: 273 NGIKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGI 332

Query: 278 RET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----------NIDFIFI 325
           RE   D +E  GI+R   +   +DL L + +     ++               N   I +
Sbjct: 333 REKSSDKIEMLGIERAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIV 392

Query: 326 GTKSDLYS 333
             KSDL S
Sbjct: 393 VNKSDLVS 400


>gi|149176567|ref|ZP_01855180.1| tRNA modification GTPase [Planctomyces maris DSM 8797]
 gi|148844680|gb|EDL59030.1| tRNA modification GTPase [Planctomyces maris DSM 8797]
          Length = 457

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 130/461 (28%), Positives = 218/461 (47%), Gaps = 25/461 (5%)

Query: 1   MNHEKE-TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC------KKKKPFPRKASLRYF 53
           MN + + TI A+++     A  +IR+SG       +         +  +   R +     
Sbjct: 1   MNLQFDDTIVALASAPGSGAAGLIRISGNEILPCLQDCFDSDAKWQNSRLPTRYSGTIKL 60

Query: 54  FGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
            G D R+   G L  +P+  SFTG+  AEFH      ++   +E LA     R+A PGEF
Sbjct: 61  AGSDSRL--PGALYFWPTARSFTGQPLAEFHTVSSPPLLESAIENLA-AHGARMARPGEF 117

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           + RAF  G++DL++AE++  +I +    +  L++  ++G +S+  G     L  + S +E
Sbjct: 118 TLRAFLAGRVDLVQAEAVLGVIDAYDHEELNLALSQLAGGVSTRIGAARVDLLELLSELE 177

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF E ED++    + ++N +  ++                     +V+ G  NAGKS
Sbjct: 178 AGLDFVE-EDIEFIDRETLVNRLQKIREFCEQLYLDSSERMESTGSLSLVLAGLPNAGKS 236

Query: 234 SLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           +L+NAL   +  A+V+DI GTTRD L   L+  G  +++ DTAG+      +     +  
Sbjct: 237 TLYNALVGDEQAALVSDIEGTTRDYLVTSLNWSGQPIQLIDTAGLEAGVHEISVSAQQFR 296

Query: 293 FLEVENADLILL---------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY--DH 341
             ++  ADL++          L+ I+  +     ++++ I + TKSDL      +   + 
Sbjct: 297 QQQMAQADLVVWCTAADLRPELRSIDQSQRTQLAESLNVITVLTKSDLSPALNGDAACEV 356

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEK-D 399
            +S     GLE+L + + S LS   +     I  +  R    L Q    L+ A    +  
Sbjct: 357 ALSVAEESGLEDLKHAVLSRLSESRRGSRQLIGSTASRCRDSLRQAGHSLQAAEEAAQLQ 416

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G +++A  +R A   LG+I G V  + +LD IFSKFCIGK
Sbjct: 417 VGEELVAIEIRGALQHLGQIVGQVYTDDILDRIFSKFCIGK 457


>gi|302510559|ref|XP_003017231.1| hypothetical protein ARB_04108 [Arthroderma benhamiae CBS 112371]
 gi|291180802|gb|EFE36586.1| hypothetical protein ARB_04108 [Arthroderma benhamiae CBS 112371]
          Length = 578

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 122/323 (37%), Positives = 181/323 (56%), Gaps = 33/323 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRI----- 60
           TI+A+ST    +AI+IIR+SGP C  +   +C  +K P PR A+LR  +     +     
Sbjct: 30  TIYALSTAPGRAAIAIIRISGPDCIPIYNALCPNRKLPKPRFAALRTIYEPGKPVSADNA 89

Query: 61  LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP--------NLRLANPG 111
           LD G L+  FP+P + TGED  E HVHGG AV+  IL  + K          ++R A PG
Sbjct: 90  LDSGALVFHFPAPNTVTGEDVLELHVHGGPAVIKSILSAIPKCATPGDAPSASIRYAEPG 149

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+RRAF N ++DL + E+L + ++++TE QRRL++ G +  LS+ Y QW  +L + R  
Sbjct: 150 EFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDTLSTRYEQWRKQLLYARGE 209

Query: 172 IEADLDFSEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           +EA +DFSE++         +      +  L + I+ HI     GE++R+G K+ +LG  
Sbjct: 210 LEALIDFSEDQHFDESVDDFISSVTGQVDSLLHQINLHIENASKGELLRSGIKVALLGAP 269

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---------- 278
           NAGKSSL N +  +D AIV+   GTTRD++ + +DL G+L K  D AG+R          
Sbjct: 270 NAGKSSLLNQIVGRDAAIVSSEEGTTRDIVDVGIDLGGWLCKFGDMAGLRSKLSQSQIAA 329

Query: 279 -----ETDDIVEKEGIKRTFLEV 296
                 T   +E+EGI+R     
Sbjct: 330 QGHVVSTVGKIEEEGIRRAKARA 352



 Score = 47.6 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 397 EKDCGLDIIAENLRLASVSLGKITGC---VDVEQLLDIIFSK 435
           EKD  + + AE+LR A+ SL KITG     DVE +L ++F K
Sbjct: 537 EKDVDIVMAAEHLRFAAESLSKITGRGEGGDVESVLGVVFEK 578


>gi|296284831|ref|ZP_06862829.1| tRNA modification GTPase TrmE [Citromicrobium bathyomarinum JL354]
          Length = 377

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 134/382 (35%), Positives = 203/382 (53%), Gaps = 15/382 (3%)

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+ L++ FP P + TGED AE H HGG AV+  I   L    +LR A  GEF+RRAF N
Sbjct: 9   LDEALVLWFPGPNTATGEDCAEIHCHGGRAVIRAIETALETGCSLRRAEAGEFTRRAFLN 68

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G++DLLEAE+L D++S+ETE+QR +      G  SS   +W D++    + +E +LDFS+
Sbjct: 69  GRMDLLEAEALGDMLSAETELQRAVLASSAGGAASSRLAEWRDEVLAASAAVEQELDFSD 128

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            +D  +         +  + + +   ++     + +R+G +IV+ G  NAGKSSLFNA+ 
Sbjct: 129 -DDQGDLPPAPWRGALEGIASQMDQWLATPS-ADRLRDGLRIVLAGPPNAGKSSLFNAVL 186

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENA 299
            +  AIV+ I GTTRDV+   + L G    + DTAG+R E  D +E+ GI R   E+  A
Sbjct: 187 DEAAAIVSPIAGTTRDVIERPIALGGVPFLLVDTAGLRGEGGDEIEQLGIMRAEGELGRA 246

Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY-TEEYDHLISSFTGEGLEELINKI 358
           D+IL L         +         + + SDL       E    +SS T +GL +LI  +
Sbjct: 247 DIILWLGPEGEGPAEALE-------VASMSDLEDAARKGEGAFHVSSTTRDGLADLIAHL 299

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
            ++   +  K P  +   +R    L+     +  A++ +    L I  E LR A  ++  
Sbjct: 300 VALGRERLPK-PGQVAVSRRQKERLADARESIRRAAIED---DLLIAGEALRQARHAMDA 355

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           + G V  E +LD +F +FCIGK
Sbjct: 356 MLGTVATEDMLDALFGRFCIGK 377


>gi|255660441|ref|ZP_05405850.1| tRNA modification GTPase TrmE [Mycoplasma genitalium G37]
          Length = 388

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 118/394 (29%), Positives = 199/394 (50%), Gaps = 14/394 (3%)

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
             + + +D  LL  F SP S+TGED  E   HG + +VN I   L K   +  A PGEF+
Sbjct: 1   DENNKRIDDVLLFKFVSPNSYTGEDLIEISCHGNMLIVNEICALLLKKGGV-YAKPGEFT 59

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +R+F NGK+ L +A ++  LI S   + + + +  ++GE+     Q   ++  +   +E 
Sbjct: 60  QRSFLNGKMSLQQASAVNKLILSPNLLVKDIVLNNLAGEMDQQLEQIAQQVNQLVMQMEV 119

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           ++D+ E  D +      + N +  +   +   I   K  + + + +KI I+G +N GKSS
Sbjct: 120 NIDYPEYLD-EQVELSTLNNKVKLIIEKLKRIIENSKQLKKLHDPFKIAIIGETNVGKSS 178

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L NAL  +D AIV++I G+TRDV+  D +L GYL+KI DTAGIR+    +EK GIK++F 
Sbjct: 179 LLNALLNQDKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKHKSGLEKAGIKKSFE 238

Query: 295 EVENADLILLLKEINS-KKEISFPK-----NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
            ++ A+L++ L +    KK++           DF     K DL +   E       S   
Sbjct: 239 SIKQANLVIYLLDATHPKKDLELISFFKKNKKDFFVFYNKKDLITNKFE----NSISAKQ 294

Query: 349 EGLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDIIA 406
           + ++EL++ +   ++  +KK+              + +    LE     + K    D++ 
Sbjct: 295 KDIKELVDLLTKYINEFYKKIDQKIYLIENWQQILIEKIKEQLEQFLKQQKKYLFFDVLV 354

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LR A   + K+ G      L++ IF+ FC+GK
Sbjct: 355 THLREAQQDILKLLGKDVGFDLVNEIFNNFCLGK 388


>gi|327295863|ref|XP_003232626.1| mitochondrial GTPase [Trichophyton rubrum CBS 118892]
 gi|326464937|gb|EGD90390.1| mitochondrial GTPase [Trichophyton rubrum CBS 118892]
          Length = 594

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 122/323 (37%), Positives = 183/323 (56%), Gaps = 33/323 (10%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLD-----GRI 60
           TI+A+ST    +AI+IIR+SGP C  + + +C  +K P PR A+LR  +          +
Sbjct: 46  TIYALSTAPGRAAIAIIRISGPYCIPIYKALCPNRKLPKPRFAALRTIYEPGKPVSADNV 105

Query: 61  LDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--------LRLANPG 111
           LD G L+  FP+P + TGED  E HVHGG AV+  IL  ++K  +        +R A PG
Sbjct: 106 LDSGALVFHFPAPNTVTGEDVLELHVHGGPAVIKSILGAISKCASPVDAPSASIRYAEPG 165

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+RRAF N ++DL + E+L + ++++TE QRRL++ G +  LS+ Y QW  +L + R  
Sbjct: 166 EFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDILSTRYEQWRKQLLYARGE 225

Query: 172 IEADLDFSEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           +EA +DFSE++         +      +  L + I+ HI     GE++R+G K+ +LG  
Sbjct: 226 LEALIDFSEDQHFDESVDDFISSVTGQVDSLLHQINLHIKNASKGELLRSGIKVALLGAP 285

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---------- 278
           NAGKSSL N +  +D AIV+   GTTRD++ + +DL G+L K  D AG+R          
Sbjct: 286 NAGKSSLLNQIVGRDAAIVSSEAGTTRDIVDVGIDLGGWLCKFGDMAGLRSKLSQSQIAA 345

Query: 279 -----ETDDIVEKEGIKRTFLEV 296
                 T   +E+EGI+R     
Sbjct: 346 QGHVVSTVGKIEEEGIRRAKARA 368



 Score = 47.9 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 29/116 (25%)

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN---------- 396
           T EG+     +I       + +    +    R   +L    ++L                
Sbjct: 481 TPEGIHSDEKQIGQQFDKSYWEDSLGVTH--RQSSNLQICAQHLNDFLSQINEGSITPDN 538

Query: 397 --------------EKDCGLDIIAENLRLASVSLGKITGC---VDVEQLLDIIFSK 435
                         EKD  + + AE+LR A+ SL KITG     DVE +L ++F K
Sbjct: 539 AIDSIKNNTIIKQVEKDVDIVMAAEHLRFAAESLAKITGRGEGGDVESVLGVVFEK 594


>gi|322712825|gb|EFZ04398.1| GTPase family protein [Metarhizium anisopliae ARSEF 23]
          Length = 505

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 136/456 (29%), Positives = 218/456 (47%), Gaps = 65/456 (14%)

Query: 48  ASLRYFFGL----DGRILD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102
           A++R         +  ILD + LL+  PSP++ TGE+  E HVHGG A V  +L  + K 
Sbjct: 22  ATVRTLLDPASNTETNILDVEALLLHLPSPKTVTGEEVLELHVHGGPATVKAVLSAIPKC 81

Query: 103 PN---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYG 159
                +R A PGEF++RAF NG++DL + ESL D + +ETE QRR ++ G SG L   Y 
Sbjct: 82  QASTRIRYAEPGEFTKRAFFNGRLDLAQIESLGDTLDAETEQQRRAAVRGNSGALGRNYE 141

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEII 216
            W  +L   R  IEA +DFSE++      S+ + N    +  +   I  H    +  E++
Sbjct: 142 DWRHQLLQARGEIEALIDFSEDQHFDESQSELLENVARQVAKILRSIDLHELGSQRSELL 201

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           RNG +I ++G  NAGKSSL N +  ++ +IV+   GTTRD++   LD+ G+L   +DTAG
Sbjct: 202 RNGIRIALVGPPNAGKSSLMNIIVGREASIVSGEAGTTRDIVEASLDIRGFLCSFADTAG 261

Query: 277 IRETDDI-------VEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFP-K 318
            R   +        VE+EGI+R     + +D++L+L  +            K+ ++   +
Sbjct: 262 FRSKTETSDEVIGAVEEEGIRRARARAQESDVVLVLASVEPGPSGPFIHFDKETMALATE 321

Query: 319 NIDFIFIGTKSD-------------LYSTYTEEYD------------HLISSFTGEGLEE 353
               + +  K D                   EEY                S+    G++ 
Sbjct: 322 AQSSLVVVNKQDTVDGDVLSHLLRQFRQLVREEYPGLPQEPICISCKEDGSASRDSGVQS 381

Query: 354 LINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEK-----DCGLDII 405
           +++ + +  S      P     +   +R    L++   +LE      +     D  + + 
Sbjct: 382 VVDALVASFSQMTDMPPDMRDLLGVTERQRQLLAKCRGHLEDFMGEAQPQEGLDSDIVLA 441

Query: 406 AENLRLASVSLGKITGC---VDVEQLLDIIFSKFCI 438
           AE LR A+  L +ITG     DVE++L ++F KFC+
Sbjct: 442 AEYLRYAADCLARITGKGEAGDVEEVLGVVFEKFCV 477


>gi|328794276|ref|XP_001123208.2| PREDICTED: tRNA modification GTPase mnmE-like, partial [Apis
           mellifera]
          Length = 342

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 115/345 (33%), Positives = 182/345 (52%), Gaps = 25/345 (7%)

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF N K+DL +AES+ADLI + ++   R+++    G  S    + +D L  +R  +EA 
Sbjct: 1   RAFLNNKLDLAQAESVADLIDAASQSAARMAVRSXKGAFSEEIHRLVDDLITLRMLVEAT 60

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LDF E ED+    + +    +  L++ +   +   + G ++R G  +V++G  N GKSSL
Sbjct: 61  LDFPE-EDIDFLQAADASGKLKQLRDRLDKVLQHAQQGALLREGMNVVLVGAPNVGKSSL 119

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NALA  D+AIVTDI GTTRD +   + L+G  V I DTAG+RET+D+VE+ GI+R+   
Sbjct: 120 LNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETEDVVERIGIERSQQA 179

Query: 296 VENADLILLLKE-------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----------- 337
           V+ AD+ L+L +         +      P ++  I +  K DL                 
Sbjct: 180 VQQADVALILIDQCEGLNATTAAILAQLPASLHKIEVHNKIDLTGEAASCVSRETGKLRA 239

Query: 338 ----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
                    +S+ TGEGL+ L   +   +  +  +      +  RH+  L Q    L  A
Sbjct: 240 FTDAGQVIALSARTGEGLDLLRQALLQQVGWQ-GESEGLFLARTRHIQALEQAKEELLNA 298

Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
           S+ +++  +++ AE+LRLA  +L +ITG    + LL +IFS+FCI
Sbjct: 299 SMCQENQ-IELFAEHLRLAQNALNEITGEFSADDLLGVIFSRFCI 342


>gi|211828027|gb|AAH08924.3| GTPBP3 protein [Homo sapiens]
          Length = 349

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 125/356 (35%), Positives = 192/356 (53%), Gaps = 19/356 (5%)

Query: 95  ILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL 154
           +L+ L  +P LR A  GEF+RRAF NGK++L E E LADLI +ETE QRR ++  + GEL
Sbjct: 3   VLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEGLADLIHAETEAQRRQALRQLDGEL 62

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
             L   W + LT   + +EA +DF E+++++    ++   ++  L+  + +H+   + G+
Sbjct: 63  GHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLEQADIEVRALQVALGAHLRDARRGQ 122

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
            +R+G  +V+ G  NAGKSSL N L++K V+IV+  PGTTRDVL   +DL G+ V +SDT
Sbjct: 123 RLRSGAHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDT 182

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN--IDFIFIGTKSDLY 332
           AG+RE    VE+EG++R             L  + +      P +     + +  KSDL 
Sbjct: 183 AGLREGVGPVEQEGVRRARESCN------FLATVVASVGAQSPSDSSQRLLLVLNKSDLL 236

Query: 333 STYTEEYDHLI------SSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLS 384
           S         +      S  TGEGL+ L+  ++  L+           + +  RH +HL 
Sbjct: 237 SPEGPGPGPDLPPHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQ 296

Query: 385 QTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +  L       +   L + AE LR+A   L ++TG    E++LDIIF  FC+GK
Sbjct: 297 GCLDALGHYK---QSKDLALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 349


>gi|32477206|ref|NP_870200.1| tRNA modification GTPase TrmE [Rhodopirellula baltica SH 1]
 gi|81659201|sp|Q7UJI3|MNME_RHOBA RecName: Full=tRNA modification GTPase mnmE
 gi|32447757|emb|CAD77275.1| probable tRNA modification GTPase trmE [Rhodopirellula baltica SH
           1]
          Length = 465

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 126/470 (26%), Positives = 222/470 (47%), Gaps = 35/470 (7%)

Query: 1   MNHE-KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-------CKKKKPFPRKASLRY 52
           M  E  +TI A+++   P+   I+RLSG  C  V   +          ++PF    +L  
Sbjct: 1   MTSEADDTIAAIASPMTPAPRGIVRLSGHDCIDVLCRMKVLDTDEASGRRPFRSSKTLSL 60

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
              L    +D   ++V+P+  S+TG+ SAE H+ G   ++   L+  A     R A PGE
Sbjct: 61  GEPLGAIEVD---VMVWPTQRSYTGQPSAELHLIGSAPLLQSSLDA-AIRAGARAARPGE 116

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+ R+F  G++DL +AE++  +I +E       ++  ++G LS         L  + + +
Sbjct: 117 FTMRSFLAGRLDLTQAEAVLGVIEAEDRGTLDQALSQLAGNLSRPLQAARSTLLDLLADV 176

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF + ED++  S + ++  +  L++ +    SQ        +  ++V+ G  NAGK
Sbjct: 177 EAGLDFVD-EDIEFISDEALIQRLDELRSLLLQTRSQLSDRGGASSTIRVVLRGLPNAGK 235

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-----RETDDIVEKE 287
           S L N L++ + AIVTD  GTTRD++T++    G+  ++ DTAG       + +  + +E
Sbjct: 236 SRLLNVLSRTESAIVTDQAGTTRDLVTVESSWGGHSFQLIDTAGSESREESDPEAPISQE 295

Query: 288 GIKRTFLEVENADLILLLKEINSKKEISFPKNID-----------FIFIGTKSDLYSTYT 336
              +       AD+ +   +          K+ +            I + TK DL  T  
Sbjct: 296 AQLQAAEAARGADVHVWCIDATGGDGFESLKSPNAVLAEAKRSAQLICVATKRDLMPTDW 355

Query: 337 E----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH-KRHLYHLSQTVRYLE 391
                  D  +SS +G G++ LI ++      +      S+     R    L+  + +L 
Sbjct: 356 NGESMRADLAVSSESGTGVDSLIERLVQFAEQRDAGETGSVIGTAARCQDSLAAAIEHLA 415

Query: 392 MA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A    E+  G +++A  +RLA  ++G++TG V  + +LD +F +FCIGK
Sbjct: 416 QAIQWTEQAAGHELVAAEMRLAVEAIGEVTGQVYTDDILDRVFGRFCIGK 465


>gi|323449068|gb|EGB04959.1| hypothetical protein AURANDRAFT_59431 [Aureococcus anophagefferens]
          Length = 486

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 144/470 (30%), Positives = 233/470 (49%), Gaps = 47/470 (10%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGRILDKG 64
           +TI+A+S+G   + ++++R+SGPS       +   K  P  R ASLR        +LD+ 
Sbjct: 29  DTIYALSSGRGVAGVAVVRVSGPSASDALAALTPGKPLPAHRVASLRTLRDAS-DVLDEA 87

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F +P SFTGED  E H HGG A V+G+LE L  +P LR A+ GEF+RRAF  GK+ 
Sbjct: 88  LVLRFEAPRSFTGEDVVELHCHGGEATVDGVLEALDALPKLRAADRGEFTRRAFAAGKLG 147

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADL++++T  QRR ++  M G +   Y +W  +L  +R+  E  +DF ++ + 
Sbjct: 148 LTEVEGLADLLAAKTAPQRRQALAQMGGSMERTYARWRGELASLRASAEVLVDFGDDVEG 207

Query: 185 QNFSSKEVL-----NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
                 + +       +  LK ++ + ++    GE  R+G ++          SSL NA+
Sbjct: 208 DVADQSDDIRAALDASVRSLKTELDAALTDAPRGEATRDGVRV----------SSLLNAV 257

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-----ETDDIVEKEGIKRTFL 294
           A +D AIV+   GTTRDVL I L L G   ++ DTAG+R     ++ D VE EG++R   
Sbjct: 258 AARDAAIVSQAAGTTRDVLEIGLSLGGLPARLFDTAGLRVDGEEDSLDAVEVEGMRRAAR 317

Query: 295 EVENADLILLLKEINSKKEISFPKNID----------------FIFIGTKSDLYSTYTEE 338
             E A +++ + +       +                       + +  K+DL       
Sbjct: 318 AAEAAHVVVFVLDAADDDASAVADAFRAIAPVWRRDDGAPAPELVVVTNKADLAEGLGAV 377

Query: 339 YDHLISSFTGEG--------LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                +              +++L  ++     +          +  RH  H++  V  L
Sbjct: 378 VAAAATVRASATAADGAAALVDDLERRVVDAFRSSRDDYEAPAITRARHRKHVASCVACL 437

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           + A L++ D   +++AE LR A+  LG + G VD EQ+LD++F+ FCIGK
Sbjct: 438 D-AVLSDPDLMPELVAEELRAATSDLGAVVGAVDTEQVLDVLFNDFCIGK 486


>gi|163742610|ref|ZP_02149996.1| tRNA modification GTPase [Phaeobacter gallaeciensis 2.10]
 gi|161384195|gb|EDQ08578.1| tRNA modification GTPase [Phaeobacter gallaeciensis 2.10]
          Length = 341

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 135/348 (38%), Positives = 199/348 (57%), Gaps = 9/348 (2%)

Query: 95  ILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL 154
           +L+ L +  ++RL++PGEF+RRA ENGK+DL + E+LADLI +ETE QR  +   ++G L
Sbjct: 1   MLDLLGQFEDVRLSDPGEFTRRALENGKLDLSQVEALADLIDAETEAQRVQAQAVLAGGL 60

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
           + L  +W   L    S IE  +DF++ EDV    +KEV   +  +  D+   I+  K+ E
Sbjct: 61  ADLAERWRKDLIRAASLIEVTIDFAD-EDVPVDVTKEVKELLAGVMADLEPQIAGVKMAE 119

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
            IR+G+++ I+G  N GKS+L NALA ++ AI ++  GTTRDV+ + +DL G  V + DT
Sbjct: 120 RIRSGFEVAIIGAPNVGKSTLLNALAGREAAITSEYAGTTRDVIEVRMDLAGLPVTLLDT 179

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334
           AG+R+TDD VE  GIK      E ADL + L E   +  I    + D I +  K+DL   
Sbjct: 180 AGLRKTDDHVEGIGIKMAKERAEKADLRVFLTE--DRAAIDIDISEDDIVVAPKADLVGD 237

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
              +    +S  TG+G++ LI  I  +L N+  K+   I +  RH   +      L+ A 
Sbjct: 238 GVPQ--KAVSGKTGQGIDMLITDITKVLRNRAGKV--GIATRARHRETMKTAYDRLQSAQ 293

Query: 395 LNEKDCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +      D+ AE++R A  SL  + G V VE LLD IFS FC+GK
Sbjct: 294 DVLRYGPEYYDVAAEDMRSAIRSLEMLVGRVGVENLLDEIFSSFCLGK 341


>gi|327540499|gb|EGF27081.1| tRNA modification GTPase TrmE [Rhodopirellula baltica WH47]
          Length = 465

 Score =  275 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 126/470 (26%), Positives = 222/470 (47%), Gaps = 35/470 (7%)

Query: 1   MNHE-KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59
           M  E  +TI A+++   P+   I+RLSG  C  V   +C+ K     +AS R  F     
Sbjct: 1   MTSEADDTIAAIASPMTPAPRGIVRLSGHDCIDV---LCRMKLLDTDEASGRRPFRSSKT 57

Query: 60  IL-------DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
           +         +  ++V+P+  S+TG+ SAE H+ G   ++   L+  A     R A PGE
Sbjct: 58  LSLREPLGAIEVDVMVWPTQRSYTGQPSAELHLIGSAPLLQSSLDA-AIRAGARAARPGE 116

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+ R+F  G++DL +AE++  +I +E       ++  ++G LS         L  + + +
Sbjct: 117 FTMRSFLAGRLDLTQAEAVLGVIEAEDRGTLDQALSQLAGNLSRPLQAARSTLLDLLADV 176

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           EA LDF + ED++  S + ++  +  L+  +    SQ        +  ++V+ G  NAGK
Sbjct: 177 EAGLDFVD-EDIEFISDEALIQRLDELRTLLLQTRSQLSDRGGASSTIRVVLRGLPNAGK 235

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-----RETDDIVEKE 287
           S L N L++ + AIV D  GTTRD++T++    G+  ++ DTAG+      + +  + +E
Sbjct: 236 SRLLNVLSRTESAIVNDQAGTTRDLVTVESSWGGHSFQLIDTAGLESREESDPEAPISQE 295

Query: 288 GIKRTFLEVENADLILLLKEINSKKEISFPKNID-----------FIFIGTKSDLYSTYT 336
              +       AD+ +   +          K+ +            I + TK DL  T  
Sbjct: 296 AQLQAAEAARGADVHVWCIDATGGDGFESLKSPNAVLAEAKRSAQLICVATKRDLMPTDW 355

Query: 337 E----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH-KRHLYHLSQTVRYLE 391
                  D  +SS +G G++ LI ++      +      S+     R    L+  + +L 
Sbjct: 356 NGESMRADLAVSSESGAGIDSLIEQLVQFAEQRDAGETGSVIGTAARCQDSLAAAIEHLA 415

Query: 392 MA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            A    E+  G +++A  +RLA  ++G++TG V  + +LD +F +FCIGK
Sbjct: 416 QAIQWTEQAAGHELVAAEMRLAVEAIGEVTGQVYTDDILDRVFGRFCIGK 465


>gi|310794446|gb|EFQ29907.1| GTP-binding protein TrmE [Glomerella graminicola M1.001]
          Length = 486

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 151/483 (31%), Positives = 227/483 (46%), Gaps = 79/483 (16%)

Query: 32  QVCEFICKKKK-PFPRKASLRYFFGL----DGRILD-KGLLIVFPSPESFTGEDSAEFHV 85
           QV + +C  K  P PR A++R         DG ILD   L++ FP   + TGED  E HV
Sbjct: 4   QVYKGLCPNKPLPKPRYAAVRTLVDAQAGDDGPILDSNALVLYFPGSRTVTGEDVLELHV 63

Query: 86  HGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ 142
           HGG A V  +L  + K P+   +R A PGEF++RAF N ++DL + ESL D +S++TE Q
Sbjct: 64  HGGPATVKAVLAAIPKCPSDSLIRYAEPGEFTKRAFLNDRLDLAQVESLGDTLSADTEQQ 123

Query: 143 RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL--- 199
           RR ++ G SG L   Y  W ++L   R  IEA +DF+E++      S+ + N    +   
Sbjct: 124 RRAAVRGSSGVLGRTYESWREQLLLARGEIEALIDFAEDQHFDESPSELMRNVSALVANM 183

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           ++ I  H +  +  E++RNG +I +LG  N GKSSL N +  ++ +IV+   GTTRD++ 
Sbjct: 184 RHSIRVHEAASQRSELLRNGIRIALLGPPNVGKSSLMNLIVGREASIVSMEAGTTRDIVE 243

Query: 260 IDLDLEGYLVKISDTAGIRETD-------------DIVEKEGIKRTFLEVENADLILLLK 306
           + LD+ GYL   +DTAGIR                 IVE+EGI+R   +   +D+I++L 
Sbjct: 244 VSLDIRGYLCSFADTAGIRTKSSVSLGGDLSEPALGIVEEEGIRRAKQKASESDIIIVLA 303

Query: 307 EINSKKEISFPKNID------------FIFIGTK---------SDLYSTYTEEYDHL--- 342
            +   ++  F  N D             + +  K         SDL   +  E       
Sbjct: 304 AVEPGRDGGFRINYDAETLRLALEAQSCLVVVNKRDAVDGSTFSDLLGRFRGEVADHAPG 363

Query: 343 ------------------ISSFTGEGLEELINKIKSILSNKF---KKLPFSIPSHKRHLY 381
                              S      +  LI+++    +            +    R   
Sbjct: 364 MARAEIITISCREAQAKATSQKDPGAIHRLIDQLVESFAGMTSLPTDQQDLLGVTARQAQ 423

Query: 382 HLSQTVRYL----EMASLNEKDCGLDII--AENLRLASVSLGKITGCV---DVEQLLDII 432
            L Q   +L     +A   E+    DI+  AE+LR A+  L KITG V   DVE++L +I
Sbjct: 424 LLEQCRGFLGDFMAVAHPEEEGEEPDIVLAAEHLRYAADCLAKITGRVESGDVEEVLGVI 483

Query: 433 FSK 435
           F K
Sbjct: 484 FEK 486


>gi|83771674|dbj|BAE61804.1| unnamed protein product [Aspergillus oryzae]
          Length = 555

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 145/516 (28%), Positives = 234/516 (45%), Gaps = 111/516 (21%)

Query: 31  FQVCEFICKKK-KPFPRKASLRYFFGLDGRI-----LDKG-LLIVFPSPESFTGEDSAEF 83
           +Q+ + +C K   P PR A++R  F           LD G L++ FP+P + TGED  E 
Sbjct: 23  YQIYQALCPKAALPRPRFAAVRTLFDPTREPSSSSALDAGALVLYFPAPNTVTGEDVLEL 82

Query: 84  HVHGGIAVVNGILEELAKMPN----LRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
           H+HGG A+V  +L  ++++      +R A PGEF+RRAF N ++DL + E+L D +S++T
Sbjct: 83  HLHGGPAIVKSVLTAISRVSQPDSLVRYAEPGEFTRRAFMNNRLDLPQIEALGDTLSADT 142

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL---NDI 196
           E QRRL++ G S  LS  Y QW  +L + R  +EA +DF+E++     S + VL     +
Sbjct: 143 EQQRRLAVRGASDALSRRYEQWRQQLLYARGELEALIDFAEDQHFDESSDELVLSVAAQV 202

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L+  +  HI     GE++R+G KI +LG  NAGKSSL N +  K+ AIV+   GTTRD
Sbjct: 203 QALRVQVGFHIQNASKGELLRHGIKIALLGAPNAGKSSLLNQIVGKEAAIVSTEEGTTRD 262

Query: 257 VLTIDLDLEGYLVKISDTAGIRETD---------DIVEKEGIKRTFLEVENADLILLLK- 306
           ++ + +DL G+  K+ D AGIR              VEKEGI+R       +D+++++  
Sbjct: 263 IVDVGVDLSGWYCKLGDMAGIRSEPVNGKESVVIGAVEKEGIRRAKARALESDVVIVVLS 322

Query: 307 -----------EINSKKEI------SFPKNIDFIFIGTK--------------------- 328
                      +++ ++E+          +   +    K                     
Sbjct: 323 LERGAFDDIPYQLSIEQEVVEAVNDCLAADKCIVIAINKCDRLPLDVHNSQFLPEQLLAS 382

Query: 329 -SDLYSTYTEEYDHLISSFTGEGLEELIN----KIKSILSNKFKKL-------------- 369
            SDL+ T  ++    IS    +    L       ++  L                     
Sbjct: 383 VSDLFPTVPQKRIFGISCREAQLESALERKDPGHLQEFLRGLISTFEEIASPSGIEGDAN 442

Query: 370 --------PFSIPSHKRHLYHLSQTVRYLEMASLNEK-----------------DCGLDI 404
                     S+    R   +L + +++L+                        +  +DI
Sbjct: 443 GDYNLSYWEDSLGVTHRQSSNLQRCLQHLDDFLAQTSRKHAPSMLGHEHEQQPIEMEIDI 502

Query: 405 I--AENLRLASVSLGKITGC---VDVEQLLDIIFSK 435
           +  AE+LR A+ +L KITG     DVE +L ++F K
Sbjct: 503 VTAAEHLRFAADALAKITGKGESGDVEDVLGVVFEK 538


>gi|71005678|ref|XP_757505.1| hypothetical protein UM01358.1 [Ustilago maydis 521]
 gi|46096628|gb|EAK81861.1| hypothetical protein UM01358.1 [Ustilago maydis 521]
          Length = 531

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 144/451 (31%), Positives = 220/451 (48%), Gaps = 59/451 (13%)

Query: 3   HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-------KKPFPRKASLRYFFG 55
              +TIFA++TGA  + +++IR+SGP    V   +C+        + P   K  LR    
Sbjct: 79  TTNDTIFALATGAGRAGVAMIRISGPLTSDVYLALCRTSHSQPYTRLPPSHKLVLRNLHH 138

Query: 56  LDG-RILDKGL-LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL-RLANPGE 112
                +LD G  +I FP+  S+TGE+S E H+HGG+A ++G+L+ L       R+A PGE
Sbjct: 139 PHTFELLDAGAGIIHFPAGSSYTGEESLELHIHGGLATISGVLDALVVFGGRMRIAEPGE 198

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAFENG++DL  AE+L  L+ +ET +QRR++++G SG  +  + +  + L    + +
Sbjct: 199 FTRRAFENGRLDLASAEALHGLVLAETAVQRRVALQGTSGLQTERFERIREVLLSAMAMV 258

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI--------SQGKL-----------G 213
           EA +DFS+E  V+  + K     +  L   + + +        S               G
Sbjct: 259 EALIDFSDEGGVEEGTWKVARESVDALAVMLRTELGISSTGTDSNSDRDNKIKRQPRHIG 318

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI+  G  + + G  NAGKSSL N LA ++ AIV+DIPGTTRDVL + LDL GY V + D
Sbjct: 319 EILSTGIHLALYGPPNAGKSSLLNRLADRNAAIVSDIPGTTRDVLQVHLDLAGYKVIVYD 378

Query: 274 TAGIRETD-----------DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEISFP 317
           TAG+R+             D +E+ GI+R    V NADL LL+   +       + I  P
Sbjct: 379 TAGMRDESQLAHGSDQPSLDEIERIGIRRAKDAVSNADLALLVLPAHQASACDAQYILRP 438

Query: 318 K---NIDFIFI-GTKSDLYSTYTE--------EYDHLISSFTGEGLEELINKIKSILSNK 365
               + D   I   KSDL    +               S  T   +  LI+ +  +++ K
Sbjct: 439 HSYTHTDRDLIFYNKSDLLGASSPSSCAPTSCSITWQGSVHTNHNIPNLISDLAHLIATK 498

Query: 366 FK--KLPFSIPSHKRHLYHLSQTVRYLEMAS 394
           +        + +  RH   L      +   S
Sbjct: 499 YSLASTETPLITQTRHRALLHHRRAQIRRQS 529


>gi|254525774|ref|ZP_05137826.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9202]
 gi|221537198|gb|EEE39651.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9202]
          Length = 303

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 117/285 (41%), Positives = 165/285 (57%), Gaps = 9/285 (3%)

Query: 16  LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRILDKGLLIVFP 70
               ++IIR+SG      C+ I + K  +  + S R F G        + +D+ L+ V  
Sbjct: 21  GKGGVAIIRVSGKDSINSCKKIVQTKSKYAWE-SHRVFHGFIQENKQNKFIDEVLISVMK 79

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-LRLANPGEFSRRAFENGKIDLLEAE 129
           SP SFTGED  E H HGG+ +VN +L+ L    + +RLANPGEFS+RAF NGKIDL +AE
Sbjct: 80  SPNSFTGEDVVELHCHGGVIIVNKVLKILLSSNSRVRLANPGEFSQRAFLNGKIDLTQAE 139

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
           S+  LI++       L+  G+ GE+        + L +    IEA +DF E  D  +F  
Sbjct: 140 SINQLINASNTRSAELAFSGIQGEIKKKINDIKNDLINQLCEIEARVDFEE--DFTDFDY 197

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            + L +I  +K  I   I   K    I +G  I ++G +N GKSSL N LAKK+ AIVT+
Sbjct: 198 TKYLKNIKKVKEKIEVLIENAKRNSYIHDGISIALIGKTNVGKSSLLNLLAKKEKAIVTN 257

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           IPGTTRDV+ ++L +    +KI DTAGIRET + +E+ GIK++F 
Sbjct: 258 IPGTTRDVIEVNLTINDIPMKIIDTAGIRETREQIERIGIKKSFR 302


>gi|322698186|gb|EFY89958.1| GTPase family protein [Metarhizium acridum CQMa 102]
          Length = 483

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 138/453 (30%), Positives = 213/453 (47%), Gaps = 65/453 (14%)

Query: 48  ASLRYFFGL----DGRILD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102
           A++R         +  ILD + LL+ FPSP++ TGE+  E HVHGG A V  +L  + K 
Sbjct: 17  ATVRTLLDPASNTETNILDVEALLLYFPSPKTVTGEEVLELHVHGGPATVKAVLSAIPKC 76

Query: 103 P---NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYG 159
                +R A PGEF++RAF NG++DL + ESL D + +ETE QRR ++ G SG L   Y 
Sbjct: 77  QTSTRVRYAEPGEFTKRAFFNGRLDLAQIESLGDTLDAETEQQRRAAVRGNSGALGRSYE 136

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSK---EVLNDILFLKNDISSHISQGKLGEII 216
            W   L   R  IEA +DFSE++      S+    V   +  + + I  H    +  E++
Sbjct: 137 DWRHHLLQARGEIEALIDFSEDQHFDESQSELLGNVARQVAKILHSIDLHELGSQRSELL 196

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           RNG +I ++G  N GKSSL N +  ++ +IV+   GTTRD++   LD+ G+L   +DTAG
Sbjct: 197 RNGIRIALVGPPNTGKSSLMNIIVGREASIVSGEAGTTRDIVEASLDIRGFLCSFADTAG 256

Query: 277 IRETDD-------IVEKEGIKRTFLEVENADLILLLKEINSKKE---ISFPKNIDFI--- 323
            R   +        VE+EGI+R     + +D++++L  + +      I F K    I   
Sbjct: 257 FRSKTETSDEVIGAVEEEGIRRARERAQESDMVVVLASVEAGPSGPFIHFDKETMAIATE 316

Query: 324 -----FIGTKSD-------------LYSTYTEEYD------------HLISSFTGEGLEE 353
                 I  K D                   EEY                S+    G++ 
Sbjct: 317 AQSSLVIVNKQDTVDGGILSHLLQQFRQLIREEYPSLPQEPICISCKEDGSASKDGGVQH 376

Query: 354 LINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEK-----DCGLDII 405
           ++N + +  S      P     +   +R    L++   +LE      +     D  + + 
Sbjct: 377 VVNALVASFSQMTDMPPDMRDLLGVTERQRQLLAKCRGHLEDFMDEAQPREGLDSDIVLA 436

Query: 406 AENLRLASVSLGKITGC---VDVEQLLDIIFSK 435
           AE LR A+  L +ITG     DVE++L ++F K
Sbjct: 437 AEYLRYAADCLARITGKGEAGDVEEVLGVVFEK 469


>gi|189195158|ref|XP_001933917.1| tRNA modification GTPase mss1, mitochondrial precursor [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187979796|gb|EDU46422.1| tRNA modification GTPase mss1, mitochondrial precursor [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 491

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 137/483 (28%), Positives = 221/483 (45%), Gaps = 88/483 (18%)

Query: 41  KKPFPRKASLRYFFGLD-----GRILDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNG 94
           ++P PR A+LR  +  +       ILD G L++ FP+P + TGED  E HVHGG A+V  
Sbjct: 9   QRPLPRYATLRKLYAPNLPPSPTTILDSGALVLYFPAPNTVTGEDVLELHVHGGPAIVRA 68

Query: 95  ILEELAKMP-----------NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143
           +L  + +              +R A PGEF+RRAF N ++DL + ESL + +S+ TE QR
Sbjct: 69  VLAAIPECATVPGGSAPMRTRIRYAEPGEFTRRAFANNRMDLPQIESLRETLSASTEQQR 128

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS---SKEVLNDILFLK 200
           +LS+ G +  L++ Y  W   L   R  +EA +DFSE++            V   +  L+
Sbjct: 129 KLSVRGTTSSLAARYEHWRMLLLQARGELEALIDFSEDQHFDESPAVLCASVAAQVDALR 188

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
             + +H++    GE++RNG  + +LG  NAGKSSL N +  +D AIV+   GTTRDV+ +
Sbjct: 189 VLMEAHVANAVRGELLRNGISVALLGAPNAGKSSLLNRVVGRDAAIVSQEAGTTRDVVEV 248

Query: 261 DLDLEGYLVKISDTAGIRETD-------DIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            LDL G+LVKI D AG+R+          +VE+EGI+R       +D+++++++  +  +
Sbjct: 249 GLDLGGWLVKIGDMAGLRKAGLVGADVVGVVEQEGIRRAKQRALESDVVIVVQDATADMD 308

Query: 314 ISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSF------------------- 346
               +         ID I    K+D    ++                             
Sbjct: 309 QEVMETAKQCVDLGIDVIVAINKTDRLPAFSTARSAWEEKIQSTLGISSDRICFISCNET 368

Query: 347 --TGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVR--------------- 388
             T   ++  ++ +++   +    L P S P        L  T R               
Sbjct: 369 TPTAGNIKSFLDILQNTFQSMTAALVPDSDPDPSIWQESLGATERQRLLLSESLSHLSTF 428

Query: 389 -------------YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV---EQLLDII 432
                          E  +    +  + + AE LR A+ +L +ITG  D    E++L ++
Sbjct: 429 LTTVANPTTVNLAACESGAGEADEVDIVVAAECLRSAADALARITGRGDSGDVEEVLGVV 488

Query: 433 FSK 435
           F K
Sbjct: 489 FEK 491


>gi|85102270|ref|XP_961305.1| hypothetical protein NCU04149 [Neurospora crassa OR74A]
 gi|16944409|emb|CAC28756.2| related to GTPase MSS1, mitochondrial [Neurospora crassa]
 gi|28922848|gb|EAA32069.1| hypothetical protein NCU04149 [Neurospora crassa OR74A]
          Length = 530

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 148/518 (28%), Positives = 230/518 (44%), Gaps = 107/518 (20%)

Query: 30  CFQVCEFICKKKK-PFPRKASLRYFFGLD--------------GRILD-KGLLIVFPSPE 73
              V   +C  K  P PR A++R                      +LD   L++ FP P+
Sbjct: 13  SLGVYNSLCPTKLIPKPRYAAVRTLTEPTEPGNDVSSPSAANANNVLDTDALVLYFPGPK 72

Query: 74  SFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAES 130
           + TGED  E HVHGG A V  +L  + K  +   +R A  GEF++RAF N ++DL + E+
Sbjct: 73  TVTGEDVLELHVHGGPATVKAVLSAIPKSTSSSTIRYAEQGEFTKRAFLNNRLDLAQVEA 132

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           L D +S+ETE QRR ++ G SG L   Y  W ++L   R  IEA +DFSE++      ++
Sbjct: 133 LGDTLSAETEQQRRAAIRGTSGVLGKTYESWREQLLLARGEIEALIDFSEDQHFDESPTE 192

Query: 191 EVLNDILFLKN---DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
            + N    +K     I  H    +  E++RNG +I +LG  N GKSSL N +  ++ +IV
Sbjct: 193 LLRNVTRLVKEILHSIKLHELGSQRSELLRNGIRIALLGPPNVGKSSLMNLIVGREASIV 252

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI------------VEKEGIKRTFLE 295
           +   GTTRD++   LD+ GYL   +DTAGIR    +            +E+EGI+R   +
Sbjct: 253 SSEAGTTRDIVEASLDIRGYLCSFADTAGIRTRSSLLPAEEKEASIGKIEEEGIRRARQK 312

Query: 296 VENADLILLLKEI-----------------------NSKKEISFPKNIDFI--------F 324
             ++D+I++L  +                       ++ + +      + +         
Sbjct: 313 ALDSDVIIVLASVEPHPNGVEGYRLNYDLSTLDLASSAPESLLVINKSETVPPSVLAQLI 372

Query: 325 IGTKSDLYSTYTEE-------YDHLISSFTGE------------GLEELINKIKSI---L 362
              K+D+ ST   E          LIS  T E             +  LI+++ S    L
Sbjct: 373 QSFKTDVLSTALPEDSPLRSQDPILISCRTAEQRSGGVDDTDPGKIHHLISRLSSSFAEL 432

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-----------------NEKDCGLDII 405
           +   + +   +    R    L Q    LE                      E +  + + 
Sbjct: 433 TAIPQDMEHLLGVTARQNELLGQCRDALEDFMAEANPNPNPAIGEGGITGEEVEADIVLA 492

Query: 406 AENLRLASVSLGKITGC---VDVEQLLDIIFSKFCIGK 440
           AE+LR+A+  L  ITG     DVE++L +IF KFC+GK
Sbjct: 493 AEHLRVAAGRLAAITGKGEAGDVEEVLGVIFEKFCVGK 530


>gi|229106078|ref|ZP_04236691.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-28]
 gi|228677344|gb|EEL31608.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-28]
          Length = 326

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 100/326 (30%), Positives = 168/326 (51%), Gaps = 17/326 (5%)

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
            DLI ++T+    +++  M G LS L G+    +    + +E ++D+ E +DV+  +   
Sbjct: 1   MDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYPEYDDVEEMTHNI 60

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
           ++     ++ +I+  +   K G+I+R G    I+G  N GKSSL N+L ++  AIVTDI 
Sbjct: 61  LIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIA 120

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE---- 307
           GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  ADL+L++      
Sbjct: 121 GTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQADLVLVVVNYSEA 180

Query: 308 -INSKKEISFP-KNIDFIFIGTKSDLYSTYTEE---------YDHLISSFTGEGLEELIN 356
             N  +E+    +  DFI I  K+DL      E              S    +G++EL  
Sbjct: 181 LTNEDEELFRAVQGKDFIVIVNKTDLPQVIDMERVTELAAGNRVITTSLIEEQGIDELEK 240

Query: 357 KIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASV 414
            I  +           +  S+ RH+  L+Q  + +  A    E    +D++  +L     
Sbjct: 241 AIADLFFEGAIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVPIDMVQIDLTRTWE 300

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            LG+ITG    E L+D +FS+FC+GK
Sbjct: 301 ILGEITGDTVHESLIDQLFSQFCLGK 326


>gi|261368861|ref|ZP_05981744.1| tRNA modification GTPase TrmE [Subdoligranulum variabile DSM 15176]
 gi|282569034|gb|EFB74569.1| tRNA modification GTPase TrmE [Subdoligranulum variabile DSM 15176]
          Length = 389

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 110/362 (30%), Positives = 182/362 (50%), Gaps = 17/362 (4%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA------SLRYFF 54
           M+  ++TI A++T      I++IR+SGP  + + E +    +   R A      ++   +
Sbjct: 1   MDRLEQTICALATPPGEGGIAVIRVSGPDAYPIVEKVFVPVRQGRRVAQAKGYTAMLGHY 60

Query: 55  GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114
            L G  +D+ + + + +P S+TGED  E  VHGG A +   L E   +     A PGEF+
Sbjct: 61  TLRGEEMDETVALFYRAPHSYTGEDVIELSVHGGTA-MAEGLLEALLLAGAAPAGPGEFT 119

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           RRA E+GK+ L +AE++ ++I++       L+   + G L+   G     L  + + + A
Sbjct: 120 RRALEHGKLSLTQAEAVMEVIAANGRQGAALAKSALDGRLAKRIGSIQAALQSLNAHLTA 179

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
            +D+ E EDV   S   +   +L  K ++   I+    G ++R+G   V+LG  N GKS+
Sbjct: 180 WVDYPE-EDVPELSDAALTGTLLTQKAELDDLIAGYGAGAVLRHGVDCVLLGRPNVGKST 238

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKR 291
           L N LA  D AIVT + GTTRD++   + L    + + DTAG+RE     D +E EGI+R
Sbjct: 239 LLNLLAGFDRAIVTPVAGTTRDIVEQAVQLGEIRLNLFDTAGVREVGADGDAIEAEGIRR 298

Query: 292 TFLEVENADLILLLKEINSKKEISFP------KNIDFIFIGTKSDLYSTYTEEYDHLISS 345
           ++ +++ A L+L + +     E S        +    + I  K DL  +     D L   
Sbjct: 299 SWKKLDEAGLVLAVFDAAQPLEESDLDIARRCQGRPALAILNKQDLAESTEAARDLLAPY 358

Query: 346 FT 347
           F 
Sbjct: 359 FK 360


>gi|229087972|ref|ZP_04220079.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-44]
 gi|228695341|gb|EEL48219.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-44]
          Length = 326

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/326 (30%), Positives = 170/326 (52%), Gaps = 17/326 (5%)

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
            DLI ++T+    +++  M G LS+L G+   ++    + +E ++D+ E +DV+  +   
Sbjct: 1   MDLIRAKTDRAMSVAINQMEGRLSNLIGRLRQEILETLAHVEVNIDYPEYDDVEEMTHNI 60

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
           ++    +++ +I   +   K G+I+R G    I+G  N GKSSL N+L ++  AIVTDI 
Sbjct: 61  LIEKATYVRGEIKKILETSKQGKILREGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIA 120

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE---- 307
           GTTRDV+   +++ G  +K+ DTAGIRET+D+VE+ G++R+   +  ADL+L++      
Sbjct: 121 GTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMGQADLVLIVVNYSEA 180

Query: 308 --INSKKEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHLISSFTGEGLEELIN 356
             I  ++     +  DFI I  K+DL      E              S    +G++EL  
Sbjct: 181 LTIEDEELFRAVQGKDFIVIVNKTDLPKQIDMERVTKLAGDNRIITTSLIEEKGVDELEK 240

Query: 357 KIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASV 414
            I  +      +    +  S+ RH+  L+Q  + + +     E    +D++  +L     
Sbjct: 241 AIADLFFEGAIESADMTYVSNARHIGLLTQAEKTIGDAIEAIENGVPIDMVQIDLTRTWE 300

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            LG+ITG    E L+D +FS+FC+GK
Sbjct: 301 ILGEITGDTVHESLIDQLFSQFCLGK 326


>gi|213021691|ref|ZP_03336138.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 309

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/311 (33%), Positives = 165/311 (53%), Gaps = 20/311 (6%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI 207
             + G  S+     ++ LTH+R ++EA +DF + E++   S  ++   +  +  D+ +  
Sbjct: 1   NSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD-EEIDFLSDGKIEAQLNGVIADLDAVR 59

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           ++ + G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL   + ++G 
Sbjct: 60  TEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM 119

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------F 316
            + I DTAG+R+ +D VE+ GI+R + E+E AD +L + +  +   +             
Sbjct: 120 PLHIIDTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARL 179

Query: 317 PKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
           PKN+    +  K+D+       S         +S+ TGEG++ L N +K  +      + 
Sbjct: 180 PKNLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFD-TNME 238

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASVSLGKITGCVDVEQLL 429
               + +RHL  L++   +LE            +++AE LRLA  SL +ITG    + LL
Sbjct: 239 GGFLARRRHLQALAEAANHLEQGKAQLLGAWAGELLAEELRLAQQSLSEITGEFTSDDLL 298

Query: 430 DIIFSKFCIGK 440
             IFS FCIGK
Sbjct: 299 GRIFSSFCIGK 309


>gi|224534062|ref|ZP_03674645.1| tRNA modification GTPase TrmE [Borrelia burgdorferi CA-11.2a]
 gi|224512761|gb|EEF83129.1| tRNA modification GTPase TrmE [Borrelia burgdorferi CA-11.2a]
          Length = 373

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 114/376 (30%), Positives = 196/376 (52%), Gaps = 26/376 (6%)

Query: 86  HGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRL 145
           HG +  +  I++ L      R+A PGEF+ RAF   KIDL +AE++ ++I ++T     L
Sbjct: 3   HGSVIGIKKIID-LFLKSGFRMAEPGEFTLRAFLAKKIDLTKAEAIHEIIFAKTNKTYSL 61

Query: 146 SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS 205
           ++  +SG L          + +  S +   LD+  ++   +     +L+     K ++  
Sbjct: 62  AVNKLSGALFVKIDAIKKSILNFLSAVSVYLDYEVDDHEISIPFDLILSS----KAELKK 117

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            I+  K+ E I NG  +V+ G  NAGKSSLFN   KKD +IV+  PGTTRD +    +L+
Sbjct: 118 LINSYKVYEKIDNGVALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELD 177

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK---- 318
           G L  + DTAG+R+ D+ VE+ GI+++   ++ A L++ + +++S   K +  F      
Sbjct: 178 GILFNLFDTAGLRDADNFVERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFIDSNKS 237

Query: 319 NIDFIFIGTKSDL-YSTYTEEYD----------HLISSFTGEGLEELINKIKSILSNKFK 367
           N   +F+  K DL  +  TEE+            +IS+   EG++ L +KI++++S +  
Sbjct: 238 NSKILFVLNKIDLKINKSTEEFVRSKVLNSSNLIMISTKNLEGIDILYDKIRALISYERV 297

Query: 368 KL--PFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           ++     I S  R +  L +     L++ S  ++    D++A +       LG+ITG V 
Sbjct: 298 EIGVDDIIISSSRQMQLLEKAYALILDLLSKIDRQVSYDMLAFDAYEIINCLGEITGEVS 357

Query: 425 VEQLLDIIFSKFCIGK 440
            E +LD +F  FC+GK
Sbjct: 358 SEDVLDNMFKNFCLGK 373


>gi|326436265|gb|EGD81835.1| hypothetical protein PTSG_02550 [Salpingoeca sp. ATCC 50818]
          Length = 395

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 130/447 (29%), Positives = 206/447 (46%), Gaps = 71/447 (15%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILD 62
           + ETIFA+S+G + + +++IR+SGP        + K   P  R AS+R  F    G +LD
Sbjct: 10  QGETIFALSSGGVRAGVAVIRVSGPQAHDSITQLTKAAAPPARLASVRKLFDPLSGDMLD 69

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
             L++ F    SFTGE  AEF VHGG AVV+ +L+ L  +  LR A PGEF+RR+F N +
Sbjct: 70  HALVLRFDEGHSFTGEAIAEFQVHGGNAVVSSVLKALEGVEGLRHAEPGEFTRRSFWNDR 129

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL + E L+DLI++ETE QR+ ++  M+G+ S +Y  W   L    + IEA +DFSEEE
Sbjct: 130 MDLTQVEGLSDLITAETEQQRKQALSYMTGKASKVYQTWKSTLLRAVAQIEAYIDFSEEE 189

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +++                D+++ + Q    +  E  R     V +  S+   SS     
Sbjct: 190 NIE---------------EDVTARVDQAGVRRATEAARQADLRVCVQDSSQPPSSRC--- 231

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK---RTFLEV 296
                   + +PG          + EG  + I +   I  T D            T    
Sbjct: 232 --------SSLPGGQGPCHCTQAN-EGETLVILNKTDISSTPDFGSDADASPTTWTPTAS 282

Query: 297 ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
            + D  L +  ++ K E   P                                 LE L +
Sbjct: 283 SHCDQGLAVFRLSCKTEQGLPA-------------------------------FLEALED 311

Query: 357 KIKSILSNKFKKLP-FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLAS 413
           +++ + S          + + +RH  H++  ++YL+ A    +   +DI+  A+ +R A 
Sbjct: 312 RVRRLCSEGAGSSGTDVVITRERHRQHVATCLQYLKEAK---EYGEVDIVSRAQMMRFAL 368

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
             LG I G V +E +LD +F++FCIGK
Sbjct: 369 NELGLILGSVHLEDILDELFAEFCIGK 395


>gi|87311361|ref|ZP_01093482.1| tRNA modification GTPase [Blastopirellula marina DSM 3645]
 gi|87285941|gb|EAQ77854.1| tRNA modification GTPase [Blastopirellula marina DSM 3645]
          Length = 445

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 206/446 (46%), Gaps = 16/446 (3%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           ++TI A+ +G+  +   +IR+SGP  F+  E   + ++                ++ D+ 
Sbjct: 6   EDTIVAIGSGSGGALRGVIRISGPDAFRCVEPWLELRETPATFGRRSAMAAALAKVADRQ 65

Query: 65  L---LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           L   L  +P   S+T + S E H  G   ++  ++    +    R+A PGEF+ RAF  G
Sbjct: 66  LACDLYYWPDDRSYTRQPSIEIHTIGSPPLLEELVAAACR-HGARMAEPGEFTLRAFLAG 124

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ++DL +AE++  +I +E + + + S+  ++G LSS   +   +L  + + +EA LDF E 
Sbjct: 125 RLDLTQAEAVLGVIDAEGDARLKQSLAQLAGGLSSPLAEARRQLLELLAHLEAGLDFVE- 183

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED++  SS  +   +   +  +   + Q    +      K+V  G  N GKSSLFNA+  
Sbjct: 184 EDIEFISSAALCAQLQDAQRCVEQSLMQLSGRDAGEKAIKVVFCGAPNVGKSSLFNAVLG 243

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +  AIV D+ GTTRD L   + + G  V + DTAG  E     ++   +    +V  ADL
Sbjct: 244 ESAAIVADLAGTTRDTLQKSIVIGGEPVALIDTAGREEVAAGPQQSAQRLGSDQVSRADL 303

Query: 302 ILLLKEINSKKEISFPKNID------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            ++  + +     +  +  +       + + TK DL +          S  TG G+  L 
Sbjct: 304 RIICFDASRAATDAEWRLWNESPEDRRLLVLTKGDLATATITAGI-TTSVATGAGIAALR 362

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASV 414
             I                +  R    L Q    L  A    +   G ++IA  +R+A  
Sbjct: 363 AAIAE---KLAALPAADDATASRCRASLEQATNSLAAALNAAQCGLGEELIAVEIRMALS 419

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            LG++ G +  + +LD+IFS+FCIGK
Sbjct: 420 ELGRVVGAIATDDILDVIFSRFCIGK 445


>gi|116198089|ref|XP_001224856.1| hypothetical protein CHGG_07200 [Chaetomium globosum CBS 148.51]
 gi|88178479|gb|EAQ85947.1| hypothetical protein CHGG_07200 [Chaetomium globosum CBS 148.51]
          Length = 496

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 146/474 (30%), Positives = 224/474 (47%), Gaps = 78/474 (16%)

Query: 40  KKKPFPRKASLRYFF-----GLDG-RILD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVV 92
           K  P PR A +R  F      L G  I+D   L++ FP P++ TGED  E HVHGG A V
Sbjct: 23  KAPPKPRFAGVRTLFEPGLADLSGANIVDSDALVLYFPGPKTVTGEDVLELHVHGGPATV 82

Query: 93  NGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEG 149
             +L  + + P+   +R A PGEF+RR+F NG++DL + ESL D +++ETE QRR ++ G
Sbjct: 83  KAVLSAVRRCPSSTEIRYAGPGEFTRRSFLNGRLDLAQIESLGDTLAAETEHQRRAAVRG 142

Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI---LFLKNDISSH 206
            SG L   Y  W D+L   R  IEA +DFSE++      ++ + N       + + I  H
Sbjct: 143 NSGTLGKTYDSWRDQLLLGRGEIEALIDFSEDQHFDESPAELLTNVTRLTEDILHSIGLH 202

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
               +  E++RNG +I +LG  NAGKSSL N +  ++ +IV+   GTTRD++   LD+ G
Sbjct: 203 KLGSQRSELLRNGIRIALLGPPNAGKSSLMNQIVGREASIVSAEAGTTRDIVEASLDIRG 262

Query: 267 YLVKISDTAGIR---------------ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           YL   +DTAGIR                T   +E+EGI+R   +  ++D+I++L  + + 
Sbjct: 263 YLCSFADTAGIRTKTSESLGHHDGTAASTIGAIEQEGIRRARQKALDSDVIIVLASVEAT 322

Query: 312 KE-----------ISFPKNIDFIFIG-TKSDLYSTYTEEY---DHLISSFTGE------- 349
           +            +          +   K+D+ S  + E    D   S            
Sbjct: 323 ESGNHRISYDLETLQLAAGAQQCLVAVNKTDIVSPESLELLIQDFKSSVLADIDGLSGQE 382

Query: 350 ----------------GLEELINKIKS---ILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                           G+ EL   +      L++    +   +   +R    LS+  R+L
Sbjct: 383 PLTISCKAAAGLTDAGGIHELTEILAQSFASLTSLPDDMQHLLGVTERQSQLLSECERHL 442

Query: 391 EMASLNEK------DCGLDIIAENLRLASVSLGKITGC---VDVEQLLDIIFSK 435
                  K      +  + + AE+LRLA + L  ITG     DVE++L +IF K
Sbjct: 443 GDFMAEAKKSDSYDEPDIVLAAEHLRLAGLRLASITGRGESGDVEEVLGVIFEK 496


>gi|255081831|ref|XP_002508134.1| hypothetical protein MICPUN_60555 [Micromonas sp. RCC299]
 gi|226523410|gb|ACO69392.1| hypothetical protein MICPUN_60555 [Micromonas sp. RCC299]
          Length = 662

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 96/333 (28%), Positives = 159/333 (47%), Gaps = 46/333 (13%)

Query: 4   EKETIFAVSTGALP--SAISIIRLSGPSCFQVCEFICKKK------------KPFPRKAS 49
           + +TI A++T  +P    ++IIRLSGP   +    + +               P    A 
Sbjct: 92  DGDTIVAIATPVVPNAGGVAIIRLSGPRAVEAARAVFRPASRAARAAAREGAPPSSHTAL 151

Query: 50  LRYFFGLDG------------------RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAV 91
                                       ++D+ L++    P S+T ED  E H HGG   
Sbjct: 152 YGVVVDPTSVPNGSRRVNDEDVDADALDVVDEVLVLPMLRPRSYTAEDVVEIHCHGGSVC 211

Query: 92  VNGILEELAKMP----------NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141
           V  +L  L +             +RLA PGEF+ RAF NG++DL +AE++  L+++ TE 
Sbjct: 212 VQRVLSLLTRRDLLDPSGDTAGGVRLARPGEFTLRAFLNGRLDLTQAEAVHSLVAARTER 271

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
               ++  + G L+S       +   + + +EA LDF +  ++    S  +  ++  ++ 
Sbjct: 272 AADGALAALRGGLASPVRDARARCVDLLAELEARLDFED--ELTPLDSDAIAAEVAAVRA 329

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           D++  ++  + G+++  G  + I+G  NAGKSSL NA ++ + AIVT I GTTRDV+   
Sbjct: 330 DVAKVLATARRGKLLDTGVTVAIVGKPNAGKSSLLNAWSRSERAIVTPIAGTTRDVVEAR 389

Query: 262 LDLEGYLVKISDTAGIRETD--DIVEKEGIKRT 292
           ++  G  V + DTAGIR     D VE  G+KR+
Sbjct: 390 VECAGLPVTLLDTAGIRRGAGVDEVEAIGVKRS 422



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 3/100 (3%)

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEM--ASLNEKDC 400
           S+ TG GLEEL  ++  I+             +++R    L Q +  LE   A + + + 
Sbjct: 563 SAVTGAGLEELERELGRIVEGGSVDAEGGAWSANQRQAEALEQALGALERLEAIVVDGNL 622

Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +D    +LR A+++LG +TG    E +LD++F+KFCIGK
Sbjct: 623 PVDFWTIDLREAAMALGAVTGEDVSEDVLDVVFTKFCIGK 662


>gi|269469285|gb|EEZ80798.1| GTPase [uncultured SUP05 cluster bacterium]
          Length = 325

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 102/327 (31%), Positives = 172/327 (52%), Gaps = 13/327 (3%)

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           +++AE++AD+I + +E   R ++  +SG  S         +  +R F+EA +DFS+ E++
Sbjct: 1   MVQAEAVADIIEANSEQASRSALRSLSGVFSKQVNTLTRAIIELRIFVEATIDFSD-EEI 59

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S++V      +++++   +     G I+R G  + I G  NAGKSSL NAL ++  
Sbjct: 60  DFLQSEQVKERAQHIQDEVQEILHSATQGAILREGLNVAIAGKPNAGKSSLLNALTQRSS 119

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRDVL   + ++G  + I DTAG+ E+ D+VEKEGIKR    +  AD++L+
Sbjct: 120 AIVTDIAGTTRDVLRETIHIDGMPLNIIDTAGLHESQDVVEKEGIKRAIDVIAQADVVLM 179

Query: 305 LKEINSKKEI--SFPKNIDFI---FIGTKSDLYSTYTEEYDHL------ISSFTGEGLEE 353
           + +   +       P+ +D      I  K DL +               I +   +G++ 
Sbjct: 180 MYDAQDQSPDFSLLPEKLDLKKLLVIKNKIDLTNERPGRCIEQGKTQLSICAKEIQGVDL 239

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L  ++  +           + + KRH+  L +++  +  A L  +   ++++AE+LR A 
Sbjct: 240 LRQELADMA-GLDSGAEGVVLARKRHIIALEESLEAINNALLQLEGGAIELMAEDLRHAG 298

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++G ITG    + LL  IFS FCIGK
Sbjct: 299 QAMGSITGEFSSDDLLGEIFSSFCIGK 325


>gi|168701783|ref|ZP_02734060.1| tRNA modification GTPase TrmE [Gemmata obscuriglobus UQM 2246]
          Length = 422

 Score =  260 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 126/426 (29%), Positives = 202/426 (47%), Gaps = 14/426 (3%)

Query: 24  RLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LDGRILD-KGLLIVFPSPESFTGED 79
           R+SGP+   V   +   +       S R+  G   L G       +L  F  P+S+TG+D
Sbjct: 2   RVSGPNARAVVARVFAAEPLPTSPGSRRFVRGVLRLSGVSSPLPAVLYFFAGPKSYTGQD 61

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
            AE H+ G   +V  ++ +L      R A PGEF+ RAF  GK DL +AE++  +I + T
Sbjct: 62  LAELHLVGSPPLVERLISDLLSA-GARPARPGEFTMRAFLAGKKDLPQAEAVQAVIEAGT 120

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           +     ++E ++G +S       D L ++ + +EA LDF++ ED++  +    +  +   
Sbjct: 121 DSDLSAALEQLAGGVSRPLDALRDDLLNLLADVEAALDFAD-EDIEFVTQAATVARVRGA 179

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
              +     Q     +     ++ ++G  NAGKSSLFNALA    A+V+ + GTTRD LT
Sbjct: 180 VEHLEMVRKQLDARTLSGRSVRVALVGLPNAGKSSLFNALA-SGAALVSPVAGTTRDYLT 238

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEIS 315
             L L G  V++ DTAG  +  D +E++  +    +   AD+I+   E  +     K   
Sbjct: 239 KPLALAGVPVELVDTAGWLDATDTIEEQAQRLGAEQATRADVIVWCDESGAFGARDKTHL 298

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                + + + TKSDL S  +E      S     GL+        + +          PS
Sbjct: 299 RATGAELLKVRTKSDLTSEVSEGQSLACSVIAPGGLDL--LLAALVDAATSLTRSALAPS 356

Query: 376 HKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFS 434
             R   H+   + +L E  +L  +    +++A  LR A   LG++TG +    LLD IFS
Sbjct: 357 QSRCRGHVLACLEHLWEAETLAARGEHPELLALALRGALEPLGEMTGAIYTNDLLDRIFS 416

Query: 435 KFCIGK 440
           +FCIGK
Sbjct: 417 RFCIGK 422


>gi|302341712|ref|YP_003806241.1| tRNA modification GTPase TrmE [Desulfarculus baarsii DSM 2075]
 gi|301638325|gb|ADK83647.1| tRNA modification GTPase TrmE [Desulfarculus baarsii DSM 2075]
          Length = 460

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 121/436 (27%), Positives = 210/436 (48%), Gaps = 22/436 (5%)

Query: 24  RLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL-DGRILDKGLLIVFPSPESFTGED 79
           RLSGP  + V   +     ++   PR+  L        G  +D+ L + F  P S+T ED
Sbjct: 28  RLSGPRSWAVGRALLPWTARRPIIPRRMELGLVVDPASGEAVDQALAVFFRGPHSYTTED 87

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
           S E H HGG A V  ++  LA+    RLA PGEF+ RA   G++DL +AE++  L ++++
Sbjct: 88  SVEIHCHGGSACVWRVI-GLAQAQGCRLAGPGEFTMRAMLGGRLDLTQAEAVGRLAAAQS 146

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           +++ RL+M  ++G L    G     +    + +EA +DF +  D    +       +   
Sbjct: 147 DIEARLAMAMLAGGLGRALGPARQAIVAAAASVEAAIDFPD--DAPELAGPAQATALEDG 204

Query: 200 KNDISSHISQGKLGEI-IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
                + +  G +G      G K+ I G  N GKSSLFNAL  +  AIV++ PG TRDV+
Sbjct: 205 AARPLAALLAGTVGRAAYWEGAKVAICGRPNVGKSSLFNALLGRQRAIVSERPGATRDVV 264

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------K 312
              L L G   +++DTAG+    D +++ G +R    + + DL L+L + +         
Sbjct: 265 DEVLILGGVACRLADTAGLGPAADELDRLGQERATSFLADCDLALVLLDGSRPLTSADHA 324

Query: 313 EISFPKNIDFIFIGTKSDLYSTYTE-----EYDHLISSFTGEGLEELINKIKSILSNKFK 367
            ++  ++   + +  K+DL   +            IS+ +G GL EL   +   L     
Sbjct: 325 VLALCQDRPRLLVVNKADLPPAWQPSALGLGPTLAISATSGLGLNELARAVAEALCQGAA 384

Query: 368 K-LPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +  P  +  + R    L + + ++    A L   +   ++I+ +L  A  +LG++ G   
Sbjct: 385 EPAPGEVVVNARQRAALGRGLAFVRRAVAELGRPEPRPELISLDLAGALAALGEVDGQGA 444

Query: 425 VEQLLDIIFSKFCIGK 440
            +++++ +FS FC+GK
Sbjct: 445 PDEVIEAVFSTFCVGK 460


>gi|320589254|gb|EFX01716.1| mitochondrial GTPase [Grosmannia clavigera kw1407]
          Length = 591

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 112/310 (36%), Positives = 174/310 (56%), Gaps = 18/310 (5%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL--DGRI 60
           ++ TI+A+S+    + I++IR+SGP+C QV   +C    +  PR A++R  +       +
Sbjct: 62  DQSTIYALSSAPGKAGIAVIRVSGPACLQVRRALCPTAAQLKPRYAAVRTLYRPQASDDV 121

Query: 61  LD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL--AKMPNLRLANPGEFSRRA 117
           LD   +++ FP P++ TGED  E HVHGG A V  +L  +       +R A PGEF+RRA
Sbjct: 122 LDTDAVVLYFPGPKTVTGEDVLELHVHGGAATVRAVLSAIPATSQTAIRYAEPGEFTRRA 181

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSG-ELSSLYGQWIDKLTHIRSFIEADL 176
           F + ++DL E E+L   + +ETE QRR ++ G  G +L + Y  W  +L   R+ IEA +
Sbjct: 182 FFHDRVDLAEVEALGAALDAETEQQRRAAVRGSGGRQLGATYDGWRRELLAARAEIEALI 241

Query: 177 DFSEEEDVQNFSSKE---VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           DF+E++      +     V   +  L   +++H +    G ++R G +I ++G +NAGKS
Sbjct: 242 DFAEDQHFDESPTDLLGGVSGHVRTLLRALATHEAAADRGSLLRQGIRIALVGPANAGKS 301

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV--------E 285
           S+ N +A +  +IV+   GTTRDV+   LDL GYL   +DTAG R   D+         E
Sbjct: 302 SMMNLVAGRAASIVSPEAGTTRDVVQASLDLRGYLCTFADTAGFRNIRDVRDTSAASTIE 361

Query: 286 KEGIKRTFLE 295
            EGI+R   E
Sbjct: 362 AEGIRRARQE 371



 Score = 62.2 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 12/98 (12%)

Query: 350 GLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEM------ASLNEKDC 400
           G+  L++++    +      P +   +    R    L+Q  R+L+       A+   +D 
Sbjct: 494 GIGGLVDQLARSFAAMTDLPPDAQHLLGVTARQQQLLAQCRRHLDHFLLEAGATAGSRDP 553

Query: 401 GLDIIAENLRLASVSLGKITGCVDV---EQLLDIIFSK 435
            + + AE+LR A+ SL +ITG  DV   E++L +IF K
Sbjct: 554 DVVLAAEHLRYAADSLAQITGRGDVGDIEEVLGVIFEK 591


>gi|283782054|ref|YP_003372809.1| small GTP-binding protein [Pirellula staleyi DSM 6068]
 gi|283440507|gb|ADB18949.1| small GTP-binding protein [Pirellula staleyi DSM 6068]
          Length = 466

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 127/462 (27%), Positives = 212/462 (45%), Gaps = 31/462 (6%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-----------SLRYF 53
            + I A +T        +IRLSG     V     +      + A           +    
Sbjct: 10  DDVIVAEATSRASGVRGVIRLSGDRALAVVAAFSEAHHELDQLAVASSTRAVVIPTHLVL 69

Query: 54  FGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
               G++     L+V+P   S+T + + E H  G   +++ ++   A     R A  GEF
Sbjct: 70  PAPLGQV--PATLLVWPGRRSYTRQPTVEIHTVGCTPILD-VITSTACAAGARAARRGEF 126

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           + RA   G++DL +AE++  +I + +  Q   ++  ++G L+S      ++L  + S +E
Sbjct: 127 TLRALLAGRLDLTQAEAVLGVIEARSPQQLSTALSQLAGGLASPLAALREELLDLLSLVE 186

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A LDF++ ED+   SS E+ + I  +   + +   Q     +  +  ++++ G  NAGKS
Sbjct: 187 AGLDFAD-EDLDLLSSDELTSRIEAVAAQVIALEDQLASRAVRTSRPRVLLAGRPNAGKS 245

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR-- 291
           SLFNALA    AIV D+ GTTRD LT  + L    + + DTAG+ E     + + + +  
Sbjct: 246 SLFNALAGYHAAIVADVAGTTRDYLTQTIRLGLLEIDLLDTAGLDEMVPTTKLDALAQQL 305

Query: 292 TFLEVENADLILLLKEI----NSKKEI--SFPKNIDFIFIGTKSDLYS-----TYTEEYD 340
           T      ADL+L   +     + ++ I   +      + IGTK DL S         + D
Sbjct: 306 TISAAAEADLVLWCIDARRLGDPREAIPEVWKTLAPAVVIGTKCDLLSPAEMAQGRSQVD 365

Query: 341 HLISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
            L+SS   EGL +L  +I + +  +       S  +  +H    ++     E A +    
Sbjct: 366 LLVSSAANEGLAQLRERIAQEVALDALSPAVASTAARSQHSLATARASLA-EAAQIARSA 424

Query: 400 CGLD-IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            G D ++A  LR+A  +LG I G    + +LD +FSKFCIGK
Sbjct: 425 IGADELVAAELRIAIDALGDIAGVTYTDDILDRVFSKFCIGK 466


>gi|5174779|gb|AAD40696.1| 50 kDa protein [Caulobacter crescentus CB15]
          Length = 331

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 118/333 (35%), Positives = 188/333 (56%), Gaps = 16/333 (4%)

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL +AE +ADLI +ETE QRR ++  + G LS  Y +W D L    + +EA +DF + 
Sbjct: 1   KLDLAQAEGVADLIDAETEAQRRQALGQVGGALSQRYDRWRDLLVQALAMLEAAVDFPD- 59

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           ED+    ++     +  L  ++++ ++    G  +R+G++I ++G  NAGKS+L N LA+
Sbjct: 60  EDLPEEVAERARPGLRQLSAELNAALADVSRGRRVRDGFRIALIGAPNAGKSTLLNGLAE 119

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +D AIVTD+ GTTRDV+ + L L GY V ++DTAGIRET D++E EG++R     E ADL
Sbjct: 120 RDAAIVTDVAGTTRDVIEVPLVLGGYKVLVADTAGIRETADVIEAEGVRRAKAWAEAADL 179

Query: 302 ILLLKE-INSKKEISFPKNIDF--IFIGTKSDLYSTYTEEYDHLISSFTG---------- 348
            L + +  + K+  + P+ I      I  K+D+       +     +  G          
Sbjct: 180 RLWVVDGFHVKQADARPEAIRVGDWLILNKTDIADADASAHVAERWAGEGLTVLHIAGTS 239

Query: 349 -EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
            EG E L   + S +++      F   +  RH   LS+   YLE A L++    +++ AE
Sbjct: 240 AEGPEALRAALASHVADALSGAEFPAATRLRHAERLSEARSYLERA-LSDVGLEVELAAE 298

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++RLA+ +L +I+G +D E +L  +FS FCIGK
Sbjct: 299 DVRLAARALERISGRIDPEDVLGRVFSTFCIGK 331


>gi|296121960|ref|YP_003629738.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776]
 gi|296014300|gb|ADG67539.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776]
          Length = 461

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 122/438 (27%), Positives = 203/438 (46%), Gaps = 23/438 (5%)

Query: 24  RLSGPSCFQVCEFIC---KKKKPFPRKA--SLRYFFGLDGRILDKGLLIVFPSPESFTGE 78
           RL+GP    V   +           RKA       +    R      L ++P   S+ G+
Sbjct: 26  RLAGPQTVTVVSGLFEASTGTWKAARKAICVHGSIWIPGDRFHIPARLTLWPDHRSYCGQ 85

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
             AE  + G   ++   L E  +    R A PGEF+ RAF NGK+DL++AE++  +I + 
Sbjct: 86  PQAEITLAGCQPLLEATLAECFR-HGARGAQPGEFTLRAFLNGKVDLIQAEAVLGVIEAR 144

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
            E   R+++  +SG +S       + L ++ + IEA LDF + ED++     +V+  +  
Sbjct: 145 HEEDLRVALNQLSGGVSQPLIDLRNDLLNLLADIEAGLDFVD-EDIEFVPRSQVIQRLQT 203

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
               + S   +        +  ++V+ G  NAGKS+L N L+  D A+V+ I GTTRD L
Sbjct: 204 AFAQLKSIEGRSPSRLTSNSRKRVVLAGRPNAGKSTLLNRLSNADAALVSPIAGTTRDYL 263

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL-------LKEINSK 311
              +  EG    + DTAG  E+ + + +   ++   ++ ++D +L        L E    
Sbjct: 264 LWSIAWEGLSFDLIDTAGWEESLNPIAEASQRQREEQMASSDFLLWCSPANLSLAEAAED 323

Query: 312 KE---ISFPKNIDFIFIGTKSDLYST----YTEEYDHLISSFTGEGLEELINKIKSILSN 364
           +E   ++  K    I I TK DLY        ++    +S+  G GL++L   ++ +L++
Sbjct: 324 QEFFDLAASKTSKAIRITTKFDLYEPEKHYLPKDSLVSLSAVNGTGLDQLAGLLRKLLTS 383

Query: 365 KFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKITGC 422
                 F +  +  R    L    R L+ A          +++A +LR    +LG +TG 
Sbjct: 384 DHSLSQFWLGTTAARCHEVLGSAFRALDSALQAARSGTADELLAADLRQVINALGLMTGA 443

Query: 423 VDVEQLLDIIFSKFCIGK 440
              E LLD IFS+FCIGK
Sbjct: 444 TQTEDLLDRIFSRFCIGK 461


>gi|46121683|ref|XP_385396.1| hypothetical protein FG05220.1 [Gibberella zeae PH-1]
          Length = 436

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 125/434 (28%), Positives = 195/434 (44%), Gaps = 70/434 (16%)

Query: 77  GEDSAEFHVHGGIAVVNGILEELAKM---PNLRLANPGEFSRRAFENGKIDLLEAESLAD 133
            +D  E HVHGG A V  +L  + K      +R A PGEF++RAF N ++DL + ESL+D
Sbjct: 3   RDDVLELHVHGGSATVKAVLAAIPKCATAHRIRYAEPGEFTKRAFFNNRLDLAQIESLSD 62

Query: 134 LISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
            +++ETE QRR ++ G SG L   Y  W ++L   R  IEA +DFSE++      ++ + 
Sbjct: 63  TLAAETEQQRRAAVRGNSGSLGRQYEAWREQLLLTRGEIEALIDFSEDQHFDESQAELLQ 122

Query: 194 N---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           N    +  + + I  H    +  E++RNG +I +LG  N GKSSL N +  ++ +IV+  
Sbjct: 123 NVTAQVARMLHSIELHEQGSQRSELLRNGIRIALLGPPNVGKSSLMNLIVGREASIVSGE 182

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETD------------DIVEKEGIKRTFLEVEN 298
            GTTRD++   LD+ GYL   +DTAG R                 VE+EGI+R       
Sbjct: 183 AGTTRDIVEASLDIRGYLCSFADTAGFRSQSSQITSEAESGAIGAVEEEGIRRAKQRALE 242

Query: 299 ADLILLLKEIN----------SKKEISFPKN-IDFIFIGTKSDLYSTY------------ 335
           +DL+++L  +            ++ +       D + +  K D                 
Sbjct: 243 SDLVIVLASVEKGPRGFFLQYDEETLDLAAGAEDCLVVVNKQDAVDKVEFGKLVQKFRQN 302

Query: 336 ------------------TEEYDHLISSFTGEGLEELINKIKSILSNKFK---KLPFSIP 374
                              E       S    G++ +I ++             L   + 
Sbjct: 303 AQLRAPKLAAAELVSISCKEAQTGSWESKDPGGIQAVITRLVESFERMTSMPVDLQDLLG 362

Query: 375 SHKRHLYHLSQTVRYLEMA---SLNEKDCGLD--IIAENLRLASVSLGKITGC---VDVE 426
             +R    L +  ++LE     +  E+    D  + AE LR A+  L +ITG     DVE
Sbjct: 363 VTERQRQLLIKCRQHLEDFMVEATPEEGMDADTVLAAEYLRYAADCLARITGRGEFGDVE 422

Query: 427 QLLDIIFSKFCIGK 440
            +L +IF KFC+GK
Sbjct: 423 DVLGVIFEKFCVGK 436


>gi|225678567|gb|EEH16851.1| tRNA modification GTPase mss1 [Paracoccidioides brasiliensis Pb03]
          Length = 478

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 130/478 (27%), Positives = 212/478 (44%), Gaps = 107/478 (22%)

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-----------NLRLANPGEF 113
           +++ FP+P++ TGED  E HVHGG AVV  +L  + +             ++R A PGEF
Sbjct: 1   MVLYFPAPKTVTGEDLLELHVHGGPAVVKAVLNAIPRCTKVDFTGSNFPLSIRYAEPGEF 60

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +RRAF N ++ L + E+L + +S+ETE QRRL++ G S  L++ Y +W  +L + R  +E
Sbjct: 61  TRRAFLNDRLSLPQIEALGNTLSAETEQQRRLAVRGTSDALATRYERWHQQLLYARGEME 120

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKN---DISSHISQGKLGEIIRNGYKIVILGHSNA 230
           A +DFSE++     + + VL+    ++N    I+ H+     GE++RNG K+ +LG  NA
Sbjct: 121 ALIDFSEDQHFDESAEEFVLSVTDEIRNLVRQINLHVENASKGELLRNGIKVALLGAPNA 180

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV------ 284
           GKSSL N +  ++ AIV+   GTTRD++ + +D+ G+  K  D AG+R            
Sbjct: 181 GKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGFFCKFGDMAGLRPDHSAQAGQMPP 240

Query: 285 ----EKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----------------NIDFI 323
               EKEGI+R       +D+++++  +      +  K                   + I
Sbjct: 241 IGAVEKEGIRRAKARALESDVVIVVLSVEECDGGTEAKLVLEPEVVDAVRSCLTLGKNVI 300

Query: 324 FIGTKSD------------------LYSTYTEEYDHL-------ISSFTGE--------- 349
               K+D                  L      ++ H+       IS    E         
Sbjct: 301 VAVNKADKCTTSMITAGTREEFFGRLAREIRSKFPHVAQDQIILISCREAENEQSETPDP 360

Query: 350 -GLEELINKIKSILSNKFKKLP--------------FSIPSHKRHLYHLSQTVRYL---- 390
             ++ L+  +  I                        S+    R   +L + V++L    
Sbjct: 361 GNIQILLGGLVRIFKKISTPAELENEGDQFDQLYWQDSLGVTHRQSSNLQKCVQHLNDFL 420

Query: 391 ----------EMASLNEKDCGLDIIAENLRLASVSLGKITGC---VDVEQLLDIIFSK 435
                     E A   E +  +   AE+LR A+  L KITG     DVE +L ++F K
Sbjct: 421 SQTEQTPENAENAEQIELNIDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVVFEK 478


>gi|149036122|gb|EDL90788.1| rCG38694, isoform CRA_a [Rattus norvegicus]
          Length = 280

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 103/234 (44%), Positives = 146/234 (62%), Gaps = 2/234 (0%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64
           TIFA+S+G    AI++IR SGP+       +   ++P P R A LR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALREPPPARSACLRLLRHPCSGEPLDRS 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  E HVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCMELHVHGGPAVVSGVLQALGSVPGLRPAKAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADLI +ETE QRR ++  + GELS L   W   LT   + +EA +DF E++++
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAHVEAYIDFGEDDNL 214

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +    ++V  D+  L+  +SSH+   + G+ +R+G  +V+ G  NAGKSSL  A
Sbjct: 215 EEGVLEQVDRDVRALEVALSSHLRDARRGQRLRSGANVVVAGPPNAGKSSLPEA 268


>gi|255521612|ref|ZP_05388849.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-175]
          Length = 301

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/301 (28%), Positives = 151/301 (50%), Gaps = 17/301 (5%)

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
           +      ++    + +E ++D+ E +DV+  + + +L     ++  +   +     G+I+
Sbjct: 1   MIRNLRQEILDALAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKIL 60

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G    I+G  N GKSSL N L +++ AIVTDI GTTRD++   +++ G  +++ DTAG
Sbjct: 61  REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 120

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSD 330
           IRET+DIVEK G++R+   + +AD ILL+        +  +         +++ +  K+D
Sbjct: 121 IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTD 180

Query: 331 LYSTYT---------EEYDHLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHL 380
           L +            E      S    EGLE L   IK++           +  S+ RH+
Sbjct: 181 LETKLDINRVRELAGENPIVSTSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHI 240

Query: 381 YHLSQTVRYLEMASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439
             L Q +  L   +   +    +DI+  ++  A   LG+ITG    ++LLD +F++FC+G
Sbjct: 241 ALLHQALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLG 300

Query: 440 K 440
           K
Sbjct: 301 K 301


>gi|260902393|ref|ZP_05910788.1| putative tRNA modification GTPase TrmE [Vibrio parahaemolyticus
           AQ4037]
 gi|308107141|gb|EFO44681.1| putative tRNA modification GTPase TrmE [Vibrio parahaemolyticus
           AQ4037]
          Length = 319

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 100/293 (34%), Positives = 153/293 (52%), Gaps = 20/293 (6%)

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
            H+R ++EA +DF E E++   +  +V  D+  + +++ +   +   G I+R G K+VI 
Sbjct: 29  IHLRIYVEAAIDFPE-EEIDFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIA 87

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  NAGKSSL NAL+ K+ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE
Sbjct: 88  GRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVE 147

Query: 286 KEGIKRTFLEVENADLILLLK-----EINSKKEI------SFPKNIDFIFIGTKSDLYST 334
           K GI+R + E+  AD +L +      +    KEI        P++I    I  K+D    
Sbjct: 148 KIGIERAWDEIAQADRVLFMVDGTTTDATDPKEIWPDFVDRLPESIGMTVIRNKADQTGE 207

Query: 335 ------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
                   +     +S+ TG G++ L N +K  +            + +RHL  L +  +
Sbjct: 208 DMGICHVNDPTLIRLSAKTGAGVDALRNHLKECM-GFSGNTEGGFMARRRHLDALERAAQ 266

Query: 389 YLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L++     E     +I+AE LR+    L +ITG    + LL  IFS FCIGK
Sbjct: 267 HLQIGQEQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 319


>gi|153820111|ref|ZP_01972778.1| probable tRNA modification GTPase TrmE [Vibrio cholerae NCTC 8457]
 gi|126509342|gb|EAZ71936.1| probable tRNA modification GTPase TrmE [Vibrio cholerae NCTC 8457]
          Length = 294

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 98/291 (33%), Positives = 152/291 (52%), Gaps = 20/291 (6%)

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           +R ++EA +DF E E++   +  +V  D+  + +++++   +   G I+R G K+VI G 
Sbjct: 6   LRIYVEAAIDFPE-EEIDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGR 64

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL NAL+ K+ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK 
Sbjct: 65  PNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKI 124

Query: 288 GIKRTFLEVENADLILLLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST-- 334
           GI+R + E+  AD +L + +         ++I        P+NI    I  K+D      
Sbjct: 125 GIERAWEEIRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPL 184

Query: 335 ----YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                 +     +S+ TG+G++ L   +K  +            + +RHL  L +   +L
Sbjct: 185 GICHVNQPTLIRLSAKTGQGVDALRQHLKECM-GFSGNQEGGFMARRRHLDALERAAEHL 243

Query: 391 EMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +     E     +I+AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 244 AIGQQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 294


>gi|147772302|emb|CAN64562.1| hypothetical protein VITISV_038233 [Vitis vinifera]
          Length = 434

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 110/355 (30%), Positives = 184/355 (51%), Gaps = 28/355 (7%)

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           GEF+ RAF NG++DL +AE++  LIS+++      ++ G+ G  SSL      +   + +
Sbjct: 55  GEFTLRAFLNGRLDLSQAENVGKLISAKSIAAADAALAGIQGGFSSLVRSLRIQCIELLT 114

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV-ILGHSN 229
            IEA LDF +  ++       +++ I  +  D+ + +      +++++G +++ I+G  N
Sbjct: 115 EIEARLDFDD--EMPPLDLNLIMDKIHXMSQDVENALETANYDQLLQSGLQVIAIIGRPN 172

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKSSL NA +K + AIVT+I GTTRDV+   + + G  V + DTAGIRETDDIVEK G+
Sbjct: 173 VGKSSLLNAWSKSERAIVTEIAGTTRDVVEASVSIHGIPVTLLDTAGIRETDDIVEKIGV 232

Query: 290 KRTFLEVENADLILLLK---EINSKKEISF-----------PKNIDFIFIGTKSDLYSTY 335
           +R+     +AD+I++     +  + ++                +   I +  K D   + 
Sbjct: 233 ERSEAVAISADVIIMTISALDGWTSQDTKLFNRIISNKKFVESSTPVILVVNKIDCAPSA 292

Query: 336 TEEYDHLISSF---------TGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQ 385
             E     +SF         TG+G+ +L + I  I+  NK          ++R    L +
Sbjct: 293 CTELFMXGNSFSKHIFTCAVTGQGISDLESAIIEIVGLNKIPAGGRRWTVNQRQCEQLVR 352

Query: 386 TVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439
           T   L    S  E++  LD    +LR A+++LG+I+G    E++L  IF KFCIG
Sbjct: 353 TKEALARLISSIEEEMPLDFWTIDLREAALALGQISGEDISEEVLTNIFGKFCIG 407


>gi|221053584|ref|XP_002258166.1| GTPase [Plasmodium knowlesi strain H]
 gi|193807999|emb|CAQ38703.1| GTPase, putative [Plasmodium knowlesi strain H]
          Length = 765

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 125/631 (19%), Positives = 227/631 (35%), Gaps = 194/631 (30%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCF------------QVCEFICK--------- 39
           M  E +TI+A+S+G   SAI+++R+SG                 +   IC          
Sbjct: 138 MLSEGDTIYALSSGRDVSAIAVVRMSGSLSRIVLEVLLHGGENHIGNKICGEGNSEFSPE 197

Query: 40  -----------------------KKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFT 76
                                  +K    RK      +      +D+ +   F  P+S+T
Sbjct: 198 EPPPDIPAGKKKTEYSLDQVIKLRKDFEERKMYHGEIYSNSNEPIDQIMYTFFKGPKSYT 257

Query: 77  GEDSAEFHVHGGIAVVNGILEELAK----------------------------------- 101
           GED  E + HG   +VN I++E+ K                                   
Sbjct: 258 GEDIVEIYCHGSPLIVNEIMDEIEKLNTLFSNLLKTEKQKYYSQNDKKENFTCTCSEEIW 317

Query: 102 -----------MPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM 150
                         +RL+  GEF+RR+F NGK++LL+ E L +L+  + + Q+++++  +
Sbjct: 318 NKLLTPRNDFFFNKIRLSMKGEFTRRSFLNGKMNLLQVEGLKELLWCKKKEQKKVALNYL 377

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
            G+  ++Y    + +  +  + +  +D    ED    S +E  N   F+K  + + I   
Sbjct: 378 KGQARNVYVTLRNNMKKLLLYTQVKID---LEDEHLSSKEERTNINQFIKLHLENVIESI 434

Query: 211 KLG------EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           +        E + N   +++ G  N+GKS+L N +   DV+IVT I G+T DV+   + +
Sbjct: 435 RKILMKPNVEDLSNPLDVLLFGQVNSGKSTLMNRICGSDVSIVTRIKGSTIDVVQKGVSI 494

Query: 265 EGYLVKISDTAGIRET-----------------------DDIVEKEGIKRTFLEVENADL 301
            G      D+AG+                             +E+ G+K+T   +  +  
Sbjct: 495 GGRSYNFCDSAGVSTHVLREEFLRRDYPNVDSPFGENTPHRALERMGVKKTIKYLRKSAC 554

Query: 302 ILLLKEINS-----KKEISFPKN----------------IDFIFIGTKSDLYSTYTEEY- 339
           +L++  +       K  +S  +N                  FI    K DL    T +  
Sbjct: 555 VLIILNVRKYVDELKFALSILQNKFRGKSNMEETTPLLLPQFIICVNKCDLSIDETHDQV 614

Query: 340 ---------------------------DHLISSFTGEGLEELINKIKSILSNKFKKLPF- 371
                                         +SS  G  ++ L+  +  ++  ++K     
Sbjct: 615 RIKIWEILNRNLQNPDFRRIYRNVWQTIFFVSSKEGHNVDALLKGLNEVMEMRYKGKNEK 674

Query: 372 ----------------------SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
                                 +    +RH  HL + +++L     +      DIIAE +
Sbjct: 675 KNEGKLEGKNEEENTGENIHSPTFLPFERHKTHLRRALKHLLFIKRHRHLLTFDIIAEEI 734

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LA  +L  I G     ++L+ I   FC+GK
Sbjct: 735 KLAVKALNGIIGGFSQAKILNEILDSFCVGK 765


>gi|281419980|ref|ZP_06250979.1| thiophene and furan oxidation protein ThdF [Prevotella copri DSM
           18205]
 gi|281405780|gb|EFB36460.1| thiophene and furan oxidation protein ThdF [Prevotella copri DSM
           18205]
          Length = 341

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 99/341 (29%), Positives = 167/341 (48%), Gaps = 23/341 (6%)

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL +AE++ADLI+S  +   ++++  + G  S+      +KL  + S +E +LDFS+ E
Sbjct: 1   MDLSQAEAVADLIASTNKATHKMALSQLKGHFSNELSLLREKLLKMTSLLELELDFSDHE 60

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +++     E+      + + I++     + G  ++ G  + I+G +N GKS+L N L  +
Sbjct: 61  ELEFADRSELQALAEEINHKITTLAHSFETGNALKQGVAVAIVGKTNVGKSTLLNRLLHE 120

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV+DI GTTRDV+     ++G   +  DTAGIR+TDD+VE  GI+RTF ++E A ++
Sbjct: 121 EKAIVSDIHGTTRDVIEDTTLIDGITFRFIDTAGIRKTDDVVENIGIERTFQKMEEAKIV 180

Query: 303 LLLKE----INSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDH---------------- 341
           + L +     +  +E+         + +  K D        +D                 
Sbjct: 181 IWLLDEQPSASEIEEMKLKNQGKKLLVVFNKMDKLENDKLAFDKFTHSCGSDSSESEAPL 240

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400
            IS+ TGE +  L   +              I +  RH   L +    L     + E   
Sbjct: 241 FISARTGENVSSLEQALVKAADIPEITENDVIITSARHYEALLRAHDSLSRVLESMEMGM 300

Query: 401 GLDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440
             DIIAE+L++    LG+IT G +  ++ L+ IF  FCIGK
Sbjct: 301 SGDIIAEDLKMVLEELGEITGGQISSQETLNNIFKHFCIGK 341


>gi|115398542|ref|XP_001214860.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114191743|gb|EAU33443.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 367

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 170/302 (56%), Gaps = 25/302 (8%)

Query: 34  CEFICKKKK-PFPRKASLRYFFGL-----DGRILDKG-LLIVFPSPESFTGEDSAEFHVH 86
           C  +C K   P PR A++R  +          +LD G L++ FP P++ TGED  EFH+H
Sbjct: 2   CAALCPKGSFPRPRVAAVRALYDPTTPPSSNSVLDSGALVLYFPGPKTVTGEDVLEFHLH 61

Query: 87  GGIAVVNGILEELAKMPN----LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ 142
           GG A+V  +L  +++       +R A PGEF+RRAF N ++DL + E+L D ++++TE Q
Sbjct: 62  GGPAIVKSVLTAISRTNRDECLVRYAEPGEFTRRAFLNNRLDLPQIEALGDTLTADTEQQ 121

Query: 143 RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK---EVLNDILFL 199
           RRL++ G S  LS  Y QW  +L + R  +EA +DF+E++     S +    V + +  L
Sbjct: 122 RRLAVRGASDALSKRYEQWRQQLLYARGELEALIDFAEDQHFDESSDELVHSVASQVQAL 181

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           +  I  HI     GE++R+G K+ +LG  NAGKSSL N +  K+ AIV+   GTTRD++ 
Sbjct: 182 RVQIELHIQNASKGELLRHGIKVALLGAPNAGKSSLLNRIVGKEAAIVSTEEGTTRDIVD 241

Query: 260 IDLDLEGYLVKISDTAGIRETD-----------DIVEKEGIKRTFLEVENADLILLLKEI 308
           + +DL G+  K+ D AGIR                VEKEGI+R       +D+++ +  +
Sbjct: 242 VGVDLSGWYCKLGDMAGIRSEAGNGAGEGPVVIGAVEKEGIRRAKARALESDVVIAVISL 301

Query: 309 NS 310
             
Sbjct: 302 EE 303


>gi|302909904|ref|XP_003050176.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256731113|gb|EEU44463.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 439

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 127/433 (29%), Positives = 204/433 (47%), Gaps = 71/433 (16%)

Query: 79  DSAEFHVHGGIAVVNGILEELAKMPNL---RLANPGEFSRRAFENGKIDLLEAESLADLI 135
              E HVHGG A V  +L  + +       R A PGEF++RAF N ++DL + ESL+D +
Sbjct: 7   HVLELHVHGGAATVKAVLSAIPRCSTAQRIRYAEPGEFTKRAFFNDRLDLAQIESLSDTL 66

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN- 194
           ++ETE QRR ++ G SG L   Y  W ++L   R  IEA +DFSE++      +  + N 
Sbjct: 67  AAETEQQRRAAVRGNSGALGRQYEAWREQLLLARGEIEALIDFSEDQHFDESQADLLHNV 126

Query: 195 --DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +  + + I  H    +  E++RNG +I +LG  N GKSSL N +  ++ +IV+   G
Sbjct: 127 TTQVARMLHSIELHEQGSQRSELLRNGIRIALLGPPNVGKSSLMNLIVGREASIVSGEAG 186

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETD------------DIVEKEGIKRTFLEVENAD 300
           TTRD++   LD+ GYL   +DTAG R                 VE+EGI+R   +  ++D
Sbjct: 187 TTRDIIEASLDIRGYLCSFADTAGFRSNGSGTINGDGGGAIGAVEEEGIRRAKQKAMDSD 246

Query: 301 LILLLKEINSKKEISFPK-----------NIDFIFIGTKSDL-----YSTYTEEYDHLIS 344
           L+++L  +      SF +             D + +  K D      +    EE+   +S
Sbjct: 247 LVIVLASVEDGPGGSFLQYDEETLDLAAGAEDCLIVVNKRDAVDAGQFEKLVEEFRRTVS 306

Query: 345 -------------------------SFTGEGLEELINKIK---SILSNKFKKLPFSIPSH 376
                                    S    G++ +++++      +++    L   +   
Sbjct: 307 EKAPKLAAAELVSISCKEAQTLGSESKDPGGVQAVMDQLVGSFEKMTSMPVDLQDLLGVT 366

Query: 377 KRHLYHLSQTVRYLE--MASLNEKDCGLD----IIAENLRLASVSLGKITGC---VDVEQ 427
           +R    L +   +L+  MA    ++ G+D    + AE LR A+  L +ITG     DVE 
Sbjct: 367 ERQRQLLVKCRGHLQDFMAEATPEEEGMDADTVLAAEYLRYAADCLARITGRGEFGDVED 426

Query: 428 LLDIIFSKFCIGK 440
           +L +IF KFC+GK
Sbjct: 427 VLGVIFEKFCVGK 439


>gi|71028036|ref|XP_763661.1| tRNA modification GTPase [Theileria parva strain Muguga]
 gi|68350615|gb|EAN31378.1| tRNA modification GTPase, putative [Theileria parva]
          Length = 562

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 108/333 (32%), Positives = 183/333 (54%), Gaps = 28/333 (8%)

Query: 1   MNHEKETIFAVSTGA--LPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG 55
           +N   ETI+ +S+G      A+++IR+SGP+       + K        PR   L   + 
Sbjct: 47  LNVLNETIYGLSSGVPEGGCAVAVIRISGPNSLHTLNLLTKNSDNVPYKPRFVKLCKLYS 106

Query: 56  -LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-----LRLAN 109
            ++  ++D  L + F SP S+TG+D  E H HG   ++  + +    + N     LR A 
Sbjct: 107 LINNNLIDDALTLYFKSPNSYTGDDVVEIHTHGNEVIIKELFDNFRHIANNYNIKLRQAE 166

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
            GEF+RRA+ + K++L++ ES+ +LI S+  +Q++ SM  ++  L  +Y +W ++L  I 
Sbjct: 167 KGEFTRRAYYSNKLNLIQVESINELIRSKNYIQKQNSMLKLNNSLCEIYKRWSNELIDII 226

Query: 170 SFIEADLDFSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           S +E  +DF EE   D+       +LN I  L  +I   I+  K  E I +G K+++LG 
Sbjct: 227 SKVEGSIDFQEESCSDIILKDKSSILNPIQNLTEEIFKFINDKK--ETIVDGIKLLLLGP 284

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---------- 277
           +N+GKSS  N L   D++IV++IPGTTRD++ ++ +L+G   +I+D+AGI          
Sbjct: 285 TNSGKSSFINNLFNDDISIVSNIPGTTRDLIRVNYNLDGLNYQITDSAGINNRILDGDTN 344

Query: 278 ---RETDDIVEKEGIKRTFLEVENADLILLLKE 307
                 +D +E  GIK+   E+E +++IL L +
Sbjct: 345 ATESLDNDTIELIGIKKALNEIETSNVILFLFD 377



 Score = 37.9 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLR 410
           + I++N           ++RH  HL+  +++L+     L+  +  L+II+E LR
Sbjct: 509 EDIVNNFNLNSNSVFIDNQRHKSHLNNIIKHLKTIKELLDSSNYDLEIISEYLR 562


>gi|222640528|gb|EEE68660.1| hypothetical protein OsJ_27256 [Oryza sativa Japonica Group]
          Length = 415

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 100/355 (28%), Positives = 179/355 (50%), Gaps = 28/355 (7%)

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           EF+ RAF NG++DL +AE+++ LIS+++      ++ G+ G  S+L      +   + + 
Sbjct: 63  EFTVRAFLNGRLDLAQAENVSRLISAKSAAAADSALAGIQGGFSALVKSLRSRCIELLTE 122

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           IEA LDF +  ++       +++ I  ++ ++   +      +++++G ++ I+G  N G
Sbjct: 123 IEARLDFED--ELPPLDLTMLVSKINGMRQEVQDALDTANYDKLLQSGLQVAIIGRPNVG 180

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL NA +K + AIVT+I GTTRDV+  ++ + G  + + DTAGIRETDDIVEK G++R
Sbjct: 181 KSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGIRETDDIVEKIGVER 240

Query: 292 TFLEVENADLILLL---KEINSKKEISFPKN-----------IDFIFIGTKSDLYSTYTE 337
           +      ADLI++     +  ++ +    ++           +  + +  K D     + 
Sbjct: 241 SEAAALGADLIIMTISAVDGWTEDDTKLIEHVLISKKSSGAPVPMVLVINKVDCAPFISG 300

Query: 338 EYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHLSQT 386
           E                + TG+G+ EL   I  +   +           ++R    L +T
Sbjct: 301 EQFEQFHGVFKKHVQTCAVTGKGISELEKAIIEVRGLEPVPSEGRRWTVNQRQFEQLLRT 360

Query: 387 VRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +    + S   +   +D    +LR A+++L  I+G    E++L  IFSKFCIGK
Sbjct: 361 QQAFTRLESSINEQLPMDFWTIDLREAALALATISGEDISEEVLSSIFSKFCIGK 415


>gi|302421188|ref|XP_003008424.1| tRNA modification GTPase GTPBP3 [Verticillium albo-atrum VaMs.102]
 gi|261351570|gb|EEY13998.1| tRNA modification GTPase GTPBP3 [Verticillium albo-atrum VaMs.102]
          Length = 421

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 111/466 (23%), Positives = 201/466 (43%), Gaps = 88/466 (18%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDG---- 58
            ++TI+A+ST    + I++IR+SGP+C  +   +C  +  P PR+A++R  +        
Sbjct: 10  TEDTIYALSTAPGRAGIAVIRISGPACLDIYRQLCPSRALPPPRQATVRTLYDPSAPPTA 69

Query: 59  RILDK-GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL-----RLANPGE 112
            +LD   L++ F  P + TG+D  E HVHGG A V  +L  + +  +      R A PGE
Sbjct: 70  NVLDPSALILYFAGPRTVTGDDVLELHVHGGQATVKAVLAAIPRCASASVAVVRYAEPGE 129

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+R                                                     R+F+
Sbjct: 130 FTR-----------------------------------------------------RAFL 136

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
              LD ++ E + +  + +        +  I       + G   R+G +I +LG  N GK
Sbjct: 137 NDRLDLTQVESLGDTLAADTEQQRWRRQGLIWRPGRTYEDGAR-RSGIRIALLGPPNVGK 195

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--------DIV 284
           SSL N +  ++ +IV+   GTTRD++   LD+ G+L   +DTAG R             V
Sbjct: 196 SSLMNLVIGREASIVSGEAGTTRDIVEASLDIRGFLCLFADTAGFRGEASLESGGSVGAV 255

Query: 285 EKEGIKRTFLEVENADLILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           E+EGI+R   +  ++ ++++L  +    +   I +      +    ++ + S   +    
Sbjct: 256 EREGIRRAKQKALDSHIVVVLAAVEPTPDGHAIVYDAETVELAAQAQAAISSEAQDATSR 315

Query: 342 -LISSFTGEGLEELINKIKSILSNKFK---KLPFSIPSHKRHLYHLSQTVRYLE-----M 392
              S+ +  G++  I+ +  +  +      ++   +    R    L Q   +L+      
Sbjct: 316 GTHSTTSNGGVDTFIDTLAGLFGDMTSLPVEMQDMLGVTARQRQLLDQCGAWLDEYMAIA 375

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGC---VDVEQLLDIIFSK 435
            + +++D  + + AE+LR A+  L KITG     DVE++L +IF K
Sbjct: 376 EAGDQQDPDVVLAAEHLRYAAECLAKITGRGEGGDVEEVLGVIFEK 421


>gi|323445332|gb|EGB01994.1| hypothetical protein AURANDRAFT_9780 [Aureococcus anophagefferens]
          Length = 299

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 116/298 (38%), Positives = 175/298 (58%), Gaps = 12/298 (4%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGRILDKG 64
           +TI+A+S+G   + ++++R+SGPS       +   K  P  R ASLR        +LD+ 
Sbjct: 3   DTIYALSSGRGVAGVAVVRVSGPSASDALAALTPGKPLPAHRVASLRTLRDAS-DVLDEA 61

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ F +P SFTGED  E H HGG A V+G+LE L  +P LR A+ GEF+RRAF  GK+ 
Sbjct: 62  LVLRFEAPRSFTGEDVVELHCHGGEATVDGVLEALDNIPKLRAADRGEFTRRAFAAGKLG 121

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           L E E LADL++++T  QRR ++  M G +   Y +W  +L  +R+  E  +DF ++ + 
Sbjct: 122 LTEVEGLADLLAAKTAPQRRQALAQMGGSMERTYARWRGELASLRASAEVLVDFGDDVEG 181

Query: 185 QNFSSKEVL-----NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
                 + +       +  LK ++ + ++    GE  R+G ++V+ G  NAGKSSL NA+
Sbjct: 182 DVADQSDDIRAALDASVRSLKTELDAALTDAPRGEATRDGVRVVLAGAPNAGKSSLLNAV 241

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-----ETDDIVEKEGIKRT 292
           A +D AIV+   GTTRDVL I L L G   ++ DTAG+R     ++ D VE EG++R 
Sbjct: 242 AARDAAIVSQAAGTTRDVLEIGLSLGGLPARLFDTAGLRVDGEEDSLDAVEVEGMRRA 299


>gi|328859150|gb|EGG08260.1| hypothetical protein MELLADRAFT_34988 [Melampsora larici-populina
           98AG31]
          Length = 350

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 107/309 (34%), Positives = 164/309 (53%), Gaps = 24/309 (7%)

Query: 8   IFAVSTG-ALPSAISIIRLSGPSC----FQVCEFICKKK---------KPFPRKASLRYF 53
           IFA +T     SA+SIIR+ GP       Q+   I  KK         K  PR A LR  
Sbjct: 41  IFAAATPTNSKSALSIIRVDGPQAAGLYHQMTSTISPKKHSNAPLHQSKLPPRTAKLRRI 100

Query: 54  FGLD-GRILD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
                   LD + ++I FP   + T   + EFH+HG  A+   ++  L+++ N RLA PG
Sbjct: 101 VDPSTKETLDPEAIVINFPHQSTSTT-STFEFHLHGSPAITKSVILSLSRLSNFRLAQPG 159

Query: 112 EFSRRAFENGK------IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165
           EF++R +E          DL +  +L +LI +ET+ QR+L++    G    +Y      L
Sbjct: 160 EFTQRRYERSMIRDQPEFDLNQLLALKNLIDAETDEQRKLAIHQFDGPFKQVYQSMRKTL 219

Query: 166 THIRSFIEADLDFSEEEDVQNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
               +  EA +DFSE+  + + S  K+V + +  L++ I SH++     E + NG ++ +
Sbjct: 220 LESMALCEAIIDFSEDGSIDDESVWKQVSHKVQSLRSIIRSHLNDSNRHEKVLNGIRLTL 279

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
            G  N GKS+L N L  ++ +IV+  PGTTRDV+ I LD  G+ + +SDTAG+R+T D +
Sbjct: 280 FGAPNVGKSTLLNWLVNREASIVSPHPGTTRDVIEISLDFHGFPIIVSDTAGLRDTQDPI 339

Query: 285 EKEGIKRTF 293
           E+ GI R  
Sbjct: 340 EEIGIDRAK 348


>gi|218662615|ref|ZP_03518545.1| tRNA modification GTPase TrmE [Rhizobium etli IE4771]
          Length = 290

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 133/259 (51%), Positives = 182/259 (70%), Gaps = 1/259 (0%)

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           AFENGK+DL+E E LADLI +ETEMQRRL++E  +G +S++Y  W ++LT  R+ IEA+L
Sbjct: 1   AFENGKLDLVEVEGLADLIEAETEMQRRLAVEHSAGGVSAVYDSWAERLTRARALIEAEL 60

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF++E+DV    S  V  D+  L+NDI  H+     GEIIR+G+K+VI G  NAGKSSL 
Sbjct: 61  DFADEDDVPGSVSDMVWADMDRLRNDIWHHLDAASAGEIIRDGFKVVIAGAPNAGKSSLL 120

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NALA++DVAIVTDI GTTRDVL +DLD++GYLVK+ DTAG+RE DD VE EG++R  + +
Sbjct: 121 NALARRDVAIVTDIAGTTRDVLQVDLDIDGYLVKLYDTAGLREADDRVEMEGVRRARIAL 180

Query: 297 ENADLILLLKEINSKK-EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            +ADL+LLL +++         + +  + +GTK DL  T ++ YD  IS+ TGEGL EL 
Sbjct: 181 RDADLVLLLVDVSDPVIPADLDQAVPHVRVGTKKDLIETGSDRYDLRISTATGEGLPELR 240

Query: 356 NKIKSILSNKFKKLPFSIP 374
             I  ++  +F  L  +IP
Sbjct: 241 ALIGRVVKERFAGLSMAIP 259


>gi|212546265|ref|XP_002153286.1| mitochondrial GTPase (Mss1), putative [Penicillium marneffei ATCC
           18224]
 gi|210064806|gb|EEA18901.1| mitochondrial GTPase (Mss1), putative [Penicillium marneffei ATCC
           18224]
          Length = 579

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 181/375 (48%), Gaps = 53/375 (14%)

Query: 48  ASLRYFFGLD-----GRILDKG-LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK 101
           A+LR  +          +LD G L++ FPSP + TGED  E HVHGG A V  +L  + K
Sbjct: 2   ATLRAIYDPTQAPSPNTLLDPGALVLYFPSPRTVTGEDVLELHVHGGPATVKAVLAAIEK 61

Query: 102 MPNL-------------RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSME 148
             ++             R A PGEF+RRAF N  +DL + E+L + +++ETE QRRL++ 
Sbjct: 62  CNDVIKSDEDNVSSSLIRYAEPGEFTRRAFMNDVLDLPQIEALGETLNAETEQQRRLAVR 121

Query: 149 GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN---DILFLKNDISS 205
           G +  LS+ Y  W  +L + R  +EA +DFSE++       + + +    +  L+  I  
Sbjct: 122 GANNTLSARYEDWRQQLLYARGELEALIDFSEDQHFDESPQELISSVSTQVDVLRQQIRF 181

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           HI     GE++RNG KI +LG  NAGKSSL N +  K+ AIV+   GTTRD++ + +DL 
Sbjct: 182 HIQNASKGELLRNGIKIALLGAPNAGKSSLLNRVVGKEAAIVSTEEGTTRDIVDVGIDLG 241

Query: 266 GYLVKISDTAGIRETDD------IVEKEGIKRTFLEVENAD---LILLLKEINSKKEISF 316
           G+  KI D AG+R + +       VE EGI+R       +D   ++L ++E         
Sbjct: 242 GWYCKIGDMAGLRSSKNNAERIGAVELEGIRRAKQRALESDVVVVVLSVQEGEGAAPAQL 301

Query: 317 PKNI--------------DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
             +               + +    KSD         D        E    L+ +++++ 
Sbjct: 302 AVDPEVLEAVHACQEYGKNIVVAINKSDRLPGSANARD--------EATGSLVQQVQALF 353

Query: 363 SNKFKKLPFSIPSHK 377
            +      FSI   +
Sbjct: 354 KDVPNSRIFSISCRE 368



 Score = 58.7 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 4/47 (8%)

Query: 398 KDCGLDII--AENLRLASVSLGKITGC--VDVEQLLDIIFSKFCIGK 440
            +  +DI+  AENLR A+ SL +ITG    DVE +L ++F KFC+GK
Sbjct: 533 AEPEVDIVTAAENLRFAAESLAQITGRGGADVEDVLGVVFEKFCVGK 579


>gi|84995997|ref|XP_952720.1| trna modification gtpase [Theileria annulata strain Ankara]
 gi|65303717|emb|CAI76094.1| trna modification gtpase, putative [Theileria annulata]
          Length = 538

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 177/333 (53%), Gaps = 37/333 (11%)

Query: 1   MNHEKETIFAVSTGA--LPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG 55
           +N   ETI+ +S+G       ++++R+SGP        + KK       PR   L   + 
Sbjct: 44  LNILNETIYGLSSGIPEGGCGVAVVRISGPDSIHTLNLLTKKSDNVPYKPRFVKLCKLYS 103

Query: 56  -LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-----LRLAN 109
            ++  ++D+ L + F SP S+TG+D  E H HG   ++  + +    + N     LR A 
Sbjct: 104 LINNNLIDEPLTLYFKSPNSYTGDDVVEIHTHGNEVIIKELFDNFRHIANNYNIKLRQAE 163

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
            GEF+RRA+ + K++L++ ES+ +LI S+  +Q++ S+  +          W + L  I 
Sbjct: 164 RGEFTRRAYYSNKLNLIQVESINELIRSKNHIQKQNSILKVI---------WTNDLIDII 214

Query: 170 SFIEADLDFSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           S +EA +DF EE   D+   ++  +L+ +  L  +I   I+  K  E I +G K+++LG 
Sbjct: 215 SKVEASIDFQEESCSDIILMNTSSILDPVQNLTQEIFKFINDKK--ETIVDGIKLLLLGP 272

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---------- 277
           +N+GKSS  N L   D++IV++IPGTTRD++ ++ +L G   +I D+AGI          
Sbjct: 273 TNSGKSSFINNLFNDDISIVSNIPGTTRDLIRVNYNLNGLNYQIIDSAGINNRILDGITN 332

Query: 278 ---RETDDIVEKEGIKRTFLEVENADLILLLKE 307
                  D +E  GIK+   ++E +++IL L +
Sbjct: 333 WSESSDCDAIELIGIKKALDQIETSNVILFLFD 365


>gi|218681276|ref|ZP_03529173.1| tRNA modification GTPase TrmE [Rhizobium etli CIAT 894]
          Length = 212

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 117/211 (55%), Positives = 157/211 (74%)

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           + FP+P SFTGED AE  +HG  AV+  +   L  +P +R+A  GEFSRRAFENGK+DL+
Sbjct: 2   LFFPAPNSFTGEDVAELQIHGSRAVLAALFHALGDVPGVRMAVEGEFSRRAFENGKLDLV 61

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           E E LADLI +ETEMQRRL++E  +G LS++Y  W ++LT  R+ IEA+LDF +E+DV  
Sbjct: 62  EIEGLADLIGAETEMQRRLAIEQSAGGLSAIYDSWAERLTRARAMIEAELDFPDEDDVPG 121

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             S  V  D+  L+++I  H++    GEIIR+G+K+VI G  NAGKSSL NAL ++DVAI
Sbjct: 122 SVSDMVWTDMEKLRSEIEEHLAAASAGEIIRDGFKVVIAGAPNAGKSSLLNALTRRDVAI 181

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           VT+I GTTRDVL +DLD++GYL+K+ DTAG+
Sbjct: 182 VTEIAGTTRDVLQVDLDIDGYLIKLYDTAGL 212


>gi|332853901|ref|XP_001161204.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like [Pan
           troglodytes]
          Length = 354

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 100/318 (31%), Positives = 159/318 (50%), Gaps = 28/318 (8%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI 207
             + GEL  L   W + LT   + +EA +DF E+++++    ++    +  L+  + +H+
Sbjct: 40  AQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLEQADIKVRALEVALGAHL 99

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              + G+ +R+G  +V+ G  NAGKSSL N L++K V+IV+  PGTTRDVL   +DL G+
Sbjct: 100 RDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGF 159

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------- 318
            V +SDTAG+RE    VE+EG++R    +E ADLIL + + +     S            
Sbjct: 160 PVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILAMLDASDLASPSSCNFLATVVASV 219

Query: 319 --------NIDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELINKIKSILSN 364
                   +   + +  KSDL S         +      S  TGEGL+ L+  ++  L+ 
Sbjct: 220 GAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLDGLLEALRKELAA 279

Query: 365 KFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
                     + +  RH +HL   +  L       +   L + AE LR+A   L ++TG 
Sbjct: 280 VCGDPSTDPPLLTRARHQHHLQGCLDALGHYK---QSKDLALAAEALRVARGHLTRLTGG 336

Query: 423 VDVEQLLDIIFSKFCIGK 440
              E++LDIIF  FC+GK
Sbjct: 337 GGTEEILDIIFRDFCVGK 354


>gi|21326644|gb|AAL30084.1| GTP-binding protein [Xanthomonas campestris pv. campestris]
          Length = 243

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 83/246 (33%), Positives = 126/246 (51%), Gaps = 3/246 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           MN    TI A++T A    I I+RLSGP   Q+   +        R A    F    G +
Sbjct: 1   MNASPSTIVAIATAAGTGGIGIVRLSGPQSVQIAAAL-GIAGLQSRHARYARFRDAQGEV 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +D G+ + FP+P SFTGE+  E   HG   ++  ++     +   R A  GEFS RAF N
Sbjct: 60  IDDGIAVWFPAPHSFTGEEVVELQGHGSPVLLRQLVARCIAL-GARQARAGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DL +AE++ADLI++      R +   + G  S       + LT +R  +EA +DF++
Sbjct: 119 GKLDLAQAEAIADLIAASDLRAARAARRSLDGVFSRRVDAVSESLTRLRIHVEAAIDFAD 178

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E +      +V  ++   +  ++  +   + G  +R+G   V++G  NAGKSSL NALA
Sbjct: 179 -EPLDTLGGAQVREELTRTRALLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237

Query: 241 KKDVAI 246
             D AI
Sbjct: 238 GSDRAI 243


>gi|291243985|ref|XP_002741880.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 245

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 86/192 (44%), Positives = 128/192 (66%), Gaps = 2/192 (1%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFG-LDGRIL 61
             +TI+A+++G     I++IRLSGPS   V + +  +K+ P PR+AS+R     + G  +
Sbjct: 54  TSDTIYALASGHGKCGIAVIRLSGPSASLVLKELTGRKQLPIPRQASIRRLHDSVSGEHV 113

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ LL+ FP P SFTGED  EFH+HGGIAV++ +   L  +P +R A PGEF++RAF NG
Sbjct: 114 DRALLLWFPGPNSFTGEDVCEFHIHGGIAVISALYHALDNIPGVRPAEPGEFTKRAFLNG 173

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+DL E E L DLI +ETE QR+ ++  M GELS LY  W D+L    + IEA +DFSE+
Sbjct: 174 KLDLTEVEGLGDLIHAETEAQRKQALRQMEGELSKLYKDWKDRLVKCAANIEAYIDFSED 233

Query: 182 EDVQNFSSKEVL 193
           +++++   ++ +
Sbjct: 234 DNIEDGVLEDGI 245


>gi|262189625|ref|ZP_06048013.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae CT
           5369-93]
 gi|262034492|gb|EEY52844.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae CT
           5369-93]
          Length = 242

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 86/243 (35%), Positives = 124/243 (51%), Gaps = 19/243 (7%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R G K+VI G  NAGKSSL N L+ K+ AIVTDI GTTRDVL   + ++G  + I DTA
Sbjct: 1   MREGMKVVIAGRPNAGKSSLLNVLSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTA 60

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI------SFPKNIDFIF 324
           G+R+  D VEK GI+R + E+  AD +L + +         ++I        P+NI    
Sbjct: 61  GLRDASDAVEKIGIERAWEEIRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITV 120

Query: 325 IGTKSDLYST------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           I  K+D            +     +S+ TG+G++ L   +K  +            + +R
Sbjct: 121 IRNKADQTGEPLGICHVNQPTLIRLSAKTGQGVDALRQHLKECM-GFSGNQEGGFMARRR 179

Query: 379 HLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437
           HL  L +   +L +     E     +I+AE LR+A   L +ITG    + LL  IFS FC
Sbjct: 180 HLDALERAAEHLAIGQQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFC 239

Query: 438 IGK 440
           IGK
Sbjct: 240 IGK 242


>gi|207741910|ref|YP_002258302.1| trna modification gtpase protein [Ralstonia solanacearum IPO1609]
 gi|206593296|emb|CAQ60223.1| trna modification gtpase protein [Ralstonia solanacearum IPO1609]
          Length = 292

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 150/291 (51%), Gaps = 25/291 (8%)

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           +A LDF E E++    + +    +  ++  +   ++Q + G ++R G  +V+ G  N GK
Sbjct: 4   KATLDFPE-EEINFPKAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGK 62

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           SSL NALA  ++AIVT I GTTRD +   + +EG  + I DTAG+R+T+D VE+ GI+RT
Sbjct: 63  SSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERT 122

Query: 293 FLEVENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYT- 336
           +  +  AD++L L +               I+++     P  +  + +  K DL    T 
Sbjct: 123 WAAIARADVVLHLLDAADYRAHGLSAEDAAIDARIAGHVPAGVPTLRVINKIDLSGAATP 182

Query: 337 -----EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                +  +  +S+  G G+E L   +  I   +         + +RHL  L     +L 
Sbjct: 183 ARVDAQPPEVWLSARDGSGIELLRAVLLEIAGWQ-GGGEGLYLARERHLSALRTAKDHLA 241

Query: 392 MAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +A+   +++   LD+ AE LRLA  +L  ITG    + LL +IFS+FCIGK
Sbjct: 242 IAADHADQRAQSLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 292


>gi|255023683|ref|ZP_05295669.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-208]
          Length = 273

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/273 (29%), Positives = 137/273 (50%), Gaps = 17/273 (6%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +  + + +L     ++  +   +     G+I+R G    I+G  N GKSSL N L +++ 
Sbjct: 1   EEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRPNVGKSSLLNQLIQEEK 60

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIVTDI GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD ILL
Sbjct: 61  AIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADADFILL 120

Query: 305 LKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHLISSFTGE 349
           +        +  +         +++ +  K+DL +            E      S    E
Sbjct: 121 VLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETRLDINRVRELAGENPIVSTSLVNDE 180

Query: 350 GLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAE 407
           GLE L   IK++           +  S+ RH+  L Q +  L   +   +    +DI+  
Sbjct: 181 GLEALEEAIKALFFAGGIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMPVDIVQI 240

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 241 DMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 273


>gi|94992363|ref|YP_600462.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS2096]
 gi|94545871|gb|ABF35918.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS2096]
          Length = 215

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 116/206 (56%), Gaps = 7/206 (3%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56
           +  E +TI A+ST     AI I+RLSG     + + + K K    + AS    +G     
Sbjct: 3   ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61

Query: 57  -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
             G I+D+ ++ V  +P++FT E+  E + HGGIAV N IL+ L +    R+A PGEF++
Sbjct: 62  KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTK 120

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           RAF NG++DL +AE++ D+I ++T+    ++++ + G LS L      ++ +  + +E +
Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKN 201
           +D+ E +DV+  ++  +       ++
Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQS 206


>gi|213422211|ref|ZP_03355277.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 216

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 71/182 (39%), Positives = 109/182 (59%), Gaps = 2/182 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            K+DL +AE++ADLI + +E   R ++  + G  S+     ++ LTH+R ++EA +DF +
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178

Query: 181 EE 182
           EE
Sbjct: 179 EE 180


>gi|163784025|ref|ZP_02178984.1| tRNA modification GTPase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880710|gb|EDP74255.1| tRNA modification GTPase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 270

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 91/271 (33%), Positives = 140/271 (51%), Gaps = 14/271 (5%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           DV+     ++  D+  + N I + +S  K G+++  G K+ I G  N GKSSLFNAL   
Sbjct: 1   DVEEIPLTDIKKDLEAVINQIKNLLSTYKKGKLVTEGIKLAIAGRPNVGKSSLFNALIGY 60

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           + AIV++I GTTRD +    ++ G  VK+ DTAGIRE  D +EK GI++T  +++ AD++
Sbjct: 61  ERAIVSEIKGTTRDFIEESFNIHGIPVKLIDTAGIREAGDKIEKIGIEKTKEKIKEADIV 120

Query: 303 LLLKEI------NSKKEISFPKNIDFIFIGTKSDLY-----STYTEEYDHLISSFTGEGL 351
           L + +          K     K+   I +  KSDL        Y  +     S+ T EG+
Sbjct: 121 LFVFDAYEGLTEEDFKIYEDIKHKSPIIVANKSDLLLDKYEKKYYFKDIIFTSTKTQEGI 180

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIAENL 409
           +EL NKI + L    +     +  + RH   L ++++ LE    N K+     +I+   +
Sbjct: 181 QELENKILNTL-GLTEDTDSEVYINIRHQTVLEKSLKLLEKIYNNLKNYENFKEILMLEI 239

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R     LG+I G +  E +L  IFS FCIGK
Sbjct: 240 REVKELLGEIIGEITTEDILGNIFSSFCIGK 270


>gi|70944814|ref|XP_742297.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521196|emb|CAH74740.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 529

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 120/541 (22%), Positives = 205/541 (37%), Gaps = 139/541 (25%)

Query: 22  IIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSA 81
           IIRL              KK    RK      +     ++D  +   F SP S+TGED  
Sbjct: 6   IIRL--------------KKNIESRKLYYSKIYDNSNDVIDNVMYSYFKSPNSYTGEDVV 51

Query: 82  EFHVHGGIAVVNGILEE---------------------------------------LAKM 102
           E + HG   +V  I+                                         L   
Sbjct: 52  EIYCHGNPFIVKEIMGAIEHVNSILYEVINAEKEKIRSRQIMDDDNFDKVGQTLFDLTNF 111

Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162
             +R +  GEF++RAFEN K+DLL+ E L +L+  + ++Q+++++  ++G   ++Y +  
Sbjct: 112 IKIRESKRGEFTQRAFENNKMDLLQIEGLKELLFCKQKIQKKIALNYLNGYAKNIYLKLR 171

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL------GEII 216
           + +  +  +I+  +DF   ED    + K+     + +K  +++ I   K        E +
Sbjct: 172 NNIKKLLVYIQLKIDF---EDEHIITKKKKKYINMLIKKKVNNAIKNIKTILKRENIESL 228

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
                ++I G+ NAGKS+  N +   D++IVT I GTT D++  ++ +        D+AG
Sbjct: 229 NTPSNVLIFGNVNAGKSTFMNYICNSDISIVTKIKGTTIDIIQKNIKIFNNDYNFCDSAG 288

Query: 277 I----------------RETDDIVEKEGIKRTFLEVENADLILLLKEIN----------- 309
           I                +     +E  GIK+T   +E    + +L  IN           
Sbjct: 289 INNLVNTKLEADKDEQHKNVHKKLESIGIKKTLNFLEKCSSVFVLININNYFNELKNVIS 348

Query: 310 --SKKEISFPKNIDFIFI-GTKSDLYSTYTE-------------------------EYDH 341
             ++K ++  K   + F+   K DL     +                         +   
Sbjct: 349 LLNRKFMNNAKKTPYFFVCINKCDLQQNPEKLLKIKNNVKKMLSNFLNPRIFKKFNKKIF 408

Query: 342 LISSFTGEGLEELINKI------KSILSNKFKKLPFS----------------IPSHKRH 379
            ISS  G  + +L+         K  L N    +                       +RH
Sbjct: 409 FISSKKGNNINKLLLHFNKTMVNKQSLHNSTINIDVEKNKIKKNLSSDNKNIYFLPFERH 468

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439
             +L +++ +L     N      DIIAE ++LA   L +I G +  EQ+L  I   FCIG
Sbjct: 469 KIYLKESLTHLSFVQKNINLVDFDIIAEEIKLAVKPLHEIIGKISNEQILSNILDTFCIG 528

Query: 440 K 440
           K
Sbjct: 529 K 529


>gi|94992362|ref|YP_600461.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS2096]
 gi|94545870|gb|ABF35917.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Streptococcus pyogenes MGAS2096]
          Length = 261

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 80/261 (30%), Positives = 139/261 (53%), Gaps = 13/261 (4%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +      K  + + +   K G+I+R G    I+G  N GKSSL N L ++D AIVTDI G
Sbjct: 1   MRKHKNSKALLENLLRTAKRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 60

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK- 311
           TTRDV+   ++++G  +K+ DTAGIRETDD+VE+ G++R+   ++ ADL+LL+   + K 
Sbjct: 61  TTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKALQEADLVLLVLNASEKL 120

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSFTGEGLEELINKIKSIL 362
                  ++  ++ + I +  K+DL      E        IS  T + +  + ++I  + 
Sbjct: 121 TDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPADLIPISVLTNQNINLIEDRINQLF 180

Query: 363 SNKFK--KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASVSLGKI 419
            +     +   +  S+ RH+  + + V+ LE  +        +D++  +L      LG+I
Sbjct: 181 FDNAGLVEQDATYLSNARHISLIEKAVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEI 240

Query: 420 TGCVDVEQLLDIIFSKFCIGK 440
           TG    ++L+  +FS+FC+GK
Sbjct: 241 TGDAAPDELITQLFSQFCLGK 261


>gi|291333887|gb|ADD93568.1| tRNA modification GTPase TrmE [uncultured marine bacterium
           MedDCM-OCT-S04-C293]
          Length = 341

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 95/300 (31%), Positives = 163/300 (54%), Gaps = 7/300 (2%)

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+  F  P S+TGED AE   HG   +V  ++E+  ++   R A PGEF++RAF N KID
Sbjct: 15  LVSCFEGPSSYTGEDVAEISCHGNPLIVRALIEKCIEL-GARNAKPGEFTQRAFLNSKID 73

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE-D 183
           L ++E++ DLI++ +      + + +SG       + ++ L  IR  +E+ +DFS+++ +
Sbjct: 74  LAQSEAVIDLINASSSAAMVAASKSVSGNFGENVDKILESLRKIRMLVESSIDFSDQDTN 133

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +       +  D   L  D    I +   G  I + +++V+ G  N GKSS+ N L+ ++
Sbjct: 134 IDFKQINALFKDFKLLLGDFDERIEE---GIRIMSEHRVVVAGPPNVGKSSIMNILSGEE 190

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVENADLI 302
            +IVT+I GTTRD +   + ++   V I DTAGI  ET D +E+ GI ++   +E ADL+
Sbjct: 191 ASIVTEIKGTTRDPIYKKIQIKDLQVDIYDTAGINDETTDEIERLGIDKSRSLIEGADLV 250

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           L + +  ++ + S  KN + + +  KSD+ S   E    ++S+   + +  L  K  S  
Sbjct: 251 LEVVDAENR-DFSLEKNENILKVFNKSDISSPPKEFGGVIVSALEKKNISALEEKFSSFF 309


>gi|218281199|ref|ZP_03487723.1| hypothetical protein EUBIFOR_00286 [Eubacterium biforme DSM 3989]
 gi|218217587|gb|EEC91125.1| hypothetical protein EUBIFOR_00286 [Eubacterium biforme DSM 3989]
          Length = 283

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 155/287 (54%), Gaps = 11/287 (3%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
            ID L  I + IE ++D+ E EDV+  ++ ++L         I   +S+ + G++++ G 
Sbjct: 1   MIDDLMDIIAQIEVNIDYPEYEDVEQLTTNDLLPKTNDWLEKIDHILSRVQTGQMLKKGI 60

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
             +I+G  N GKSSL NAL ++D AIVTDI GTTRD++   + +    + + DTAGIRE+
Sbjct: 61  DTIIVGKPNVGKSSLLNALLEEDKAIVTDIAGTTRDLVEGQIHIGSVQLNLIDTAGIRES 120

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST 334
           +D +E+ GI+++  ++++A L+LL+ + +       K+ +   K+   + I  K D    
Sbjct: 121 NDKIEQIGIEKSQEKLKDAKLVLLVFDGSKELDEEDKQLLELTKDKMRLIIYNKLDKAEA 180

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
                D +  S + + ++ LI+ ++++  N   K    + S++R +  L+     +  A 
Sbjct: 181 NK---DGIWISASNKEIQPLIDALENLYQNDLLK-EDPLLSNERQIGLLNLAKEDMLRAK 236

Query: 395 LNEKDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                    D+I  +++ A   L +I G V  E LLD +FSKFC+GK
Sbjct: 237 EAMNRMVEPDLIEIDIQAAHDHLKEILGEVHREDLLDTLFSKFCLGK 283


>gi|198274784|ref|ZP_03207316.1| hypothetical protein BACPLE_00943 [Bacteroides plebeius DSM 17135]
 gi|198272231|gb|EDY96500.1| hypothetical protein BACPLE_00943 [Bacteroides plebeius DSM 17135]
          Length = 265

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/264 (29%), Positives = 130/264 (49%), Gaps = 30/264 (11%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +    +G  ++NG  + I+G +NAGKS+L NAL  ++ AIV+DI GTTRDV+   ++L G
Sbjct: 2   VDTFSVGNALKNGVPVAIVGETNAGKSTLLNALLNEERAIVSDIHGTTRDVIEDTMNLGG 61

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFP 317
              +  DTAGIRET D +E  GI+R+F +++ AD++L + +    +E         +   
Sbjct: 62  ITFRFIDTAGIRETTDTIESLGIERSFQKLDQADIVLWVIDATCAEEQYRQLADKILPRC 121

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHL-------------------ISSFTGEGLEELINKI 358
           KN   + +  K+DL S+     D                     +S+   EGL +L  ++
Sbjct: 122 KNKHLVIVFNKADLLSSADSSADKQLARLKAALPDLPEDACVLSLSAKQKEGLSQLQKQL 181

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLG 417
               +         + S+ RH   LS+ +  +             D+++++LR     LG
Sbjct: 182 VDFAALPDLSQNDVVVSNIRHYEALSRALEAIHRVQDGLAMQLSGDLVSQDLRECLYHLG 241

Query: 418 KIT-GCVDVEQLLDIIFSKFCIGK 440
           +I  G ++ +++L  IF  FCIGK
Sbjct: 242 EIVGGTIETDEVLGNIFKHFCIGK 265


>gi|269468659|gb|EEZ80299.1| GTPase [uncultured SUP05 cluster bacterium]
          Length = 203

 Score =  208 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 80/195 (41%), Positives = 113/195 (57%), Gaps = 2/195 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H + TI A+++      I I+R+SG  C ++ + +     P PR A    FF  DG  
Sbjct: 1   MSHNETTICALASSTGQGGIGIVRVSGARCIEIAKKMLG-HVPKPRYAHYGSFFNQDGVE 59

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +DKG+ + FP+P SFTGED  EF  HGGI V+  +LE  A       A PGEFS+RAF N
Sbjct: 60  IDKGVALFFPAPNSFTGEDVLEFQGHGGILVMRSLLES-AMALGSIAAEPGEFSKRAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK+DLL+AE++ADLI + +E   R ++  +SGE S         L  +R F+EA +DFS+
Sbjct: 119 GKMDLLQAEAVADLIDASSEQSARSALRSLSGEFSDQVNALTKALIELRVFVEATIDFSD 178

Query: 181 EEDVQNFSSKEVLND 195
           EE   +    + LN 
Sbjct: 179 EEIDFSDEEIDFLNS 193


>gi|237756509|ref|ZP_04585039.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691325|gb|EEP60403.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 267

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 136/269 (50%), Gaps = 15/269 (5%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +   S  +++ +  +K+ I   ++  K G +I+ G K+ I+G  N GKSSLFNAL   + 
Sbjct: 1   EEIDSSLIISQLEEVKSQIEKLLASYKKGNLIKEGIKLAIVGRPNVGKSSLFNALVGYER 60

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AIV++I GTTRD +   L ++   V + DTAG+R+T+D +EK GI++   ++  AD+IL 
Sbjct: 61  AIVSEIQGTTRDFIEESLKIKDIPVILLDTAGLRDTEDKIEKIGIEKAQEKINEADIILF 120

Query: 305 LKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTE-----EYDHLISSFTGEGLEE 353
           + + +S      KK     K+   I +  KSDL +   +     +     S    +G++E
Sbjct: 121 VIDASSGFTEEDKKIYDKIKDKPHITVVNKSDLNNKPIDFFEKYDNIVYTSVVNNQGIKE 180

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC--GLDIIAENLRL 411
           L  KI + L     +    +  + R    L Q    +E    +        +I+   ++ 
Sbjct: 181 LEEKIITSL--GIIEKEDDLFINLRQSTLLKQAKEKIEEIENHINYLINNKEILMIYIQE 238

Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A   L ++ G +  E +LD IFSKFCIGK
Sbjct: 239 ALNYLDEVVGAISTEDVLDNIFSKFCIGK 267


>gi|207342423|gb|EDZ70194.1| YMR023Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 290

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 92/258 (35%), Positives = 143/258 (55%), Gaps = 24/258 (9%)

Query: 2   NHEKETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDGR 59
             ++ TI+A+ST A   SAI+IIR+SG     +   +       P RKA LR  +     
Sbjct: 33  TFQQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSC 92

Query: 60  ------------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--- 104
                       +LD  LL+ F +P SFTGED  E HVHGG AVVN IL+ +  + +   
Sbjct: 93  SVKPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSS 152

Query: 105 ---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQW 161
              +R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++   +G+   L+  W
Sbjct: 153 GKDIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENW 212

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF----LKNDISSHISQGKLGEIIR 217
            + +    + + A +DF+++   +  ++ E+ +++      L++ I + + + +   I++
Sbjct: 213 RETIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTILQ 272

Query: 218 NGYKIVILGHSNAGKSSL 235
           NG K+V+LG  N GKSSL
Sbjct: 273 NGIKLVLLGAPNVGKSSL 290


>gi|156097935|ref|XP_001615000.1| tRNA modification GTPase trmE [Plasmodium vivax SaI-1]
 gi|148803874|gb|EDL45273.1| tRNA modification GTPase trmE, putative [Plasmodium vivax]
          Length = 761

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 106/556 (19%), Positives = 196/556 (35%), Gaps = 156/556 (28%)

Query: 40  KKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL 99
           ++    RK      +      +D+ +   F SP+S+TGED  E + HG   +VN I+EE+
Sbjct: 207 RRDLEERKMCSGGIYNNCHEQIDQVVYSFFKSPKSYTGEDVVEIYCHGSPLIVNEIMEEI 266

Query: 100 AKMPN-----------------------------------------------LRLANPGE 112
            K+ +                                               +R +  GE
Sbjct: 267 EKLNSLFANILKSEKEKYFLSQIGKNDNFTCTCSEEIWNKLVNTRNDAFFSKIRPSRRGE 326

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+RRAF+NGK++LL+ E L +L+    + Q+++++  ++G+   +Y    + +  +  + 
Sbjct: 327 FTRRAFQNGKMNLLQVEGLKELLWCSKKEQKKIALNYLNGKAKKIYATLRNDMKKLLLYT 386

Query: 173 EADLDFSEEE---DVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           +  +D  +E    D +  S    +   L      I   + Q  + E +     +++ G  
Sbjct: 387 QVKIDLEDEHLSSDEERSSINRFIQRHLSNAIGSIRKILRQPNV-EDLSTPLDVLLFGQV 445

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-------- 280
           N+GKS+L N + + DV+IVT I G+T DV+   + +EG      D+AG+           
Sbjct: 446 NSGKSTLMNRICRSDVSIVTRIQGSTIDVVQKGVTVEGRPYNFCDSAGVSARVLREEQLL 505

Query: 281 ---------------------------------DDIVEKEGIKRTFLEVENADLILLLKE 307
                                               +E+ G+++T   +  +  +L++  
Sbjct: 506 RRDDSKGGSPTGESNPHRALERMGVKKPLKHLPHRALERMGVRKTLKHLLKSACVLIVLN 565

Query: 308 INS-KKEISFPKN--------------------IDFIFIGTKSDLYSTYTE--------- 337
           +     E+    +                       I    K DL    +          
Sbjct: 566 VRKYADELKLALSILSSQLGERESSGGEKTTPLPQLIICVNKCDLAIRESRTEVRRNIKE 625

Query: 338 -------------------EYDHLISSFTGEGLEELINKIKSILSNKF------------ 366
                                   +SS  G  +  L+  +   +                
Sbjct: 626 ILKRKLKTHRLRRIHRNVWRTIFFVSSKEGRNVGALLRGLNEAMRCGAVSGGKSGAVNGV 685

Query: 367 --KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
                P +    +RH  HL + +++L     +      DIIAE LRLA  +L  I G   
Sbjct: 686 GGGDRPPAFLPFERHKTHLRRALKHLLFIKRHRHLLTFDIIAEELRLAVAALNAIIGGFS 745

Query: 425 VEQLLDIIFSKFCIGK 440
             ++L+ I   FC+GK
Sbjct: 746 QARILNEILETFCVGK 761



 Score = 54.1 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK 40
           E +TI+A+S+G   SAI+++R+SGP    V E +   
Sbjct: 107 EGDTIYALSSGGGVSAIAVVRMSGPLSRVVLEVLLHG 143


>gi|330925757|ref|XP_003301179.1| hypothetical protein PTT_12622 [Pyrenophora teres f. teres 0-1]
 gi|311324284|gb|EFQ90706.1| hypothetical protein PTT_12622 [Pyrenophora teres f. teres 0-1]
          Length = 406

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 112/402 (27%), Positives = 180/402 (44%), Gaps = 71/402 (17%)

Query: 105 LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK 164
           +R A PGEF+RRAF N ++DL + ESL + +S+ TE QR+LS+ G +  L++ Y  W   
Sbjct: 5   IRYAEPGEFTRRAFANNRMDLPQIESLGETLSASTEQQRKLSVRGTTSSLAARYEHWRML 64

Query: 165 LTHIRSFIEADLDFSEEEDVQNFS---SKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
           L   R  +EA +DFSE++            V   +  L+  + +H++    GE++RNG  
Sbjct: 65  LLQARGELEALIDFSEDQHFDESPAVLCASVAAQVDALRVLMEAHVANAVRGELLRNGIS 124

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG  NAGKSSL N +  +D AIV+   GTTRDV+ + LDL G+LVKI D AG+R+  
Sbjct: 125 VALLGAPNAGKSSLLNRVVGRDAAIVSQEAGTTRDVVEVGLDLGGWLVKIGDMAGLRKAG 184

Query: 282 -------DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIG 326
                    VEKEGI+R       +++++++++  +  +              ID I   
Sbjct: 185 LVGADVVGAVEKEGIRRAKQRALESNVVIVVQDATADVDPEVMVTAKQCVDSGIDVIVAI 244

Query: 327 TKSDLYSTYTEEYDHLISSF---------------------TGEGLEELINKIKSILSNK 365
            K+D     +                               T   ++  ++ +++   + 
Sbjct: 245 NKTDRLPALSTARSAWEEKIQSTLGISSHRICFISCNETTPTAGNIKSFLDILQNTFKSM 304

Query: 366 FKKL-PFSIPSHKRHLYHLSQTVR----------------------------YLEMASLN 396
              L P S P        L  T R                              E A+  
Sbjct: 305 TTALVPDSDPDPSIWQESLGATERQRLLLSESLSHLSTFLSTVADPTIADLPAFETAAHE 364

Query: 397 EKDCGLDIIAENLRLASVSLGKITGC---VDVEQLLDIIFSK 435
             +  + + AE LR A+ +L +ITG     DVE++L ++F K
Sbjct: 365 ADEVDIVVAAECLRSAADALARITGRGDNGDVEEVLGVVFEK 406


>gi|260890873|ref|ZP_05902136.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254]
 gi|260859426|gb|EEX73926.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254]
          Length = 214

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 111/213 (52%), Gaps = 5/213 (2%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR--YFFGLDGR-IL 61
            +TI A+ST      I+IIR+SG   F++ + I  KK P       +  Y F  DG  I+
Sbjct: 3   FDTIAAISTPKGEGGIAIIRISGDKSFEILDKIFIKKNPNADLGFYKLNYGFIKDGEKIV 62

Query: 62  DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121
           D+ + +   +P+S+T ED  E + HGG  V   +LE L      R A  GEF++RAF NG
Sbjct: 63  DEAMAVRLKAPKSYTCEDIVEINCHGGTLVSEKVLE-LVLRNGARHAESGEFTKRAFMNG 121

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +IDL +AE++ D+I  +TE    LS++ + G+L     ++   L  I + +   LD+ E 
Sbjct: 122 RIDLSQAEAVMDIIQGKTEKSVSLSLDQLRGDLRDKVNEFKKALLDITAHVNVVLDYPE- 180

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
           E + +    E+ +++  +  + +  I     G+
Sbjct: 181 EGIDDPLPVELRDNLEKVYEEANRLIDSYDTGK 213


>gi|269468660|gb|EEZ80300.1| GTPase [uncultured SUP05 cluster bacterium]
          Length = 229

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 121/230 (52%), Gaps = 12/230 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +VI G  NAGKSSL NAL ++  AIVTDI GTTRDVL   + + G  + I DTAG+  ++
Sbjct: 1   MVIAGKPNAGKSSLLNALTQRSSAIVTDIAGTTRDVLKETIHVNGMPLNIIDTAGLHVSE 60

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI-----SFPKNIDFIFIGTKSDL----- 331
           D +E+EGIKR   E+E AD++L++ +   K+       +  K+   + I  K DL     
Sbjct: 61  DKIEQEGIKRAHGEIERADVVLMVFDAQDKEPDLSILPAVVKDKPLLLIKNKVDLTSEST 120

Query: 332 -YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
             S        L+ +   +GL+ L  ++  I           + + KRH+  L   ++ +
Sbjct: 121 GMSKVNGRTQILLCAKRADGLDLLRQELSDIA-GLSDTGEGVLLARKRHIVALESALKSI 179

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             A     +   +++AE+LR A  SLG ITG    + LL  IFS FCIGK
Sbjct: 180 HSALEQLDNGASELVAEDLRQAGQSLGSITGEFSSDDLLGEIFSSFCIGK 229


>gi|301168598|emb|CBW28188.1| putative tRNA modification GTPase [Bacteriovorax marinus SJ]
          Length = 514

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 149/299 (49%), Gaps = 7/299 (2%)

Query: 1   MNHEKE--TIFAVSTGAL-PSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD 57
           M H  +   I A STG    SAI +IR+SG S   + +   K      +     +   +D
Sbjct: 1   MLHLYDDRPIIACSTGLQSNSAIGLIRISGFSDLSIFQDFFKIDLANVKARYSHFTSIID 60

Query: 58  GRI-LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
           G I LD+ +L  + +P S+ GE+  E  VHG    +  I+        +R A  GEFS R
Sbjct: 61  GDITLDEIVLTFYSAPNSYNGENILELGVHGNQINIQRIISLFINSKLVRAAKEGEFSYR 120

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           A +N K+ L + E L  L+++ +       ++ +SG+L   Y    D    ++S +E  +
Sbjct: 121 ALKNKKLTLSQVEGLDLLLNANSSFMLDQGLQVLSGDLHKQYLSLHDSFLKLKSSVEISI 180

Query: 177 DFSEEEDVQNFSSKEVL-NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           DFSE  DV       +L   +L   + ++S   + +          + ++G +NAGKS+L
Sbjct: 181 DFSE--DVGEEQCAILLKESLLEFSSRVTSLWRRVQSDRSDLANPSVSLVGQTNAGKSTL 238

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           FN L   D +IV+D  GTTRD ++  L + G   ++ DTAG+RET+D +EK GI R   
Sbjct: 239 FNYLLANDRSIVSDQAGTTRDYVSEYLTISGNTYRLVDTAGLRETEDNIEKIGIDRAIE 297



 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYL-EMASLNEKDCGLDIIAEN 408
           +  LI  I+ ++S+KF  L    P    RH   ++     L E  SL E    + II+  
Sbjct: 423 IGPLITYIEGLISHKFNDLCSDNPLLIGRHRECINNIYLSLQEFQSLTENVEDIAIISSE 482

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L +    + ++ G V  + +L+ IF+ FCIGK
Sbjct: 483 LNILEAKVSELLGIVSPDDVLNNIFTNFCIGK 514


>gi|148668862|gb|EDL01030.1| GTP binding protein 3, isoform CRA_b [Mus musculus]
          Length = 236

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 80/163 (49%), Positives = 104/163 (63%), Gaps = 2/163 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64
           TIFA+S+G    AI++IR SGP+       +   ++P P R+A LR       G  LD+ 
Sbjct: 30  TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALQEPPPARRACLRLLRHPCSGEPLDRS 89

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 90  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 149

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           L E E LADLI +ETE QRR ++  + GELS L   W   LT 
Sbjct: 150 LTEVEGLADLIRAETEAQRRQALRQLDGELSQLCQGWAKTLTK 192


>gi|62024520|gb|AAH92042.1| Gtpbp3 protein [Mus musculus]
          Length = 241

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 80/163 (49%), Positives = 104/163 (63%), Gaps = 2/163 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64
           TIFA+S+G    AI++IR SGP+       +   ++P P R+A LR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALQEPPPARRACLRLLRHPCSGEPLDRS 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           L E E LADLI +ETE QRR ++  + GELS L   W   LT 
Sbjct: 155 LTEVEGLADLIRAETEAQRRQALRQLDGELSQLCQGWAKTLTK 197


>gi|82540701|ref|XP_724648.1| tRNA modification GTPase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479363|gb|EAA16213.1| probable tRNA modification GTPase trme [Plasmodium yoelii yoelii]
          Length = 754

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 132/631 (20%), Positives = 220/631 (34%), Gaps = 191/631 (30%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-------------------- 40
           + +EKETI+A+S+G   SAISIIR+SG     + E +  K                    
Sbjct: 124 IINEKETIYALSSGTNLSAISIIRISGSLSKIILEILLHKDAEKDVEKDVEKKGDQINSY 183

Query: 41  ---------------------------KKPFPRKASLRYFFGLDGRILDKGLLIVFPSPE 73
                                      K    RK      +     I+D  +   F SP 
Sbjct: 184 STQLLERNAKKKKKKKKWNLEEIIKLKKNIESRKLYYSKIYDNSNDIIDNVMYAYFKSPN 243

Query: 74  SFTGEDSAEFHV----------HGGIAVVNGILEELAKMP-------------------- 103
           S+TGED  E +              I  +N I+ E+                        
Sbjct: 244 SYTGEDVVEIYCHGNPFIVKEIMNAIDHINNIMYEIINDEKEKVKNKVKIKNKIKKTTHD 303

Query: 104 --------------------------------NLRLANPGEFSRRAFENGKIDLLEAESL 131
                                            +R +  GEF+ RAFEN K++LL+ E L
Sbjct: 304 ENYNYNNDDWNYFNQIEQNQIEQTIFDLNNFVKIRESKKGEFTLRAFENNKMNLLQIEGL 363

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
            +L+  + ++Q+++++  ++G   ++Y +  + +  +  +I+  +DF ++  +     K 
Sbjct: 364 KELLFCKQKIQKKIALNYLNGYAKNIYLKLRNDIKKLLIYIQLKIDFEDDHIITKKKKKY 423

Query: 192 VLNDILFLKNDISSHISQ---GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           +   I    N+   HI +    K  E +     ++I G+ NAGKS+  N +   D++IVT
Sbjct: 424 INMYIKKKVNNSIKHIKEILKRKNIESLNTPSNVLIFGNVNAGKSTFMNYICNSDISIVT 483

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGI-------------------------RETDDI 283
            I GTT D++   + L        D+AG+                         +     
Sbjct: 484 KIKGTTLDIIQKTVKLFKNDYNFCDSAGVVNLPNSNLVDAKVEPSKHVAEKAPKKSVHKK 543

Query: 284 VEKEGIKRTFLEVENADLILLLKEI--------------NSKKEISFPKNIDFIFIGTKS 329
           +E  GI++T   +EN   + +L  I              N+K      K   F     K 
Sbjct: 544 LESIGIRKTLHFLENCSSVFVLVNINNYFNELINIISLLNAKFMKKKKKIPYFFLCVNKC 603

Query: 330 DLYSTYTEEY------------------------DHLISSFTGEGLEELINKIKSILSNK 365
           DL     +                             ISS  G  + +L++     +  +
Sbjct: 604 DLQPNTEKHLMIKNNLKRMLLNLDSHIFKKFSKKIFFISSKKGSNINKLLSHFNKTMIRR 663

Query: 366 FKKLPFSI----------------PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            K    SI                   +RH  +L +++ +L     N      DIIAE +
Sbjct: 664 QKMNNSSITVKNNAKKNHAQNIYFLPFERHKIYLKESLTHLRFVQKNINIIDFDIIAEEI 723

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LA   L  I G +  +Q+L  I   FCIGK
Sbjct: 724 KLAVKPLYDIIGKISNKQILANILDNFCIGK 754


>gi|149176952|ref|ZP_01855561.1| tRNA modification GTPase [Planctomyces maris DSM 8797]
 gi|148844207|gb|EDL58561.1| tRNA modification GTPase [Planctomyces maris DSM 8797]
          Length = 387

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 89/400 (22%), Positives = 162/400 (40%), Gaps = 56/400 (14%)

Query: 9   FAVSTGALPSAISIIRLSGP-----SCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63
            A+ T     A++ IR+ G      +    C F    +K    +   R  +GL G+  ++
Sbjct: 15  AALLTPRGRGAVATIRVCGELISVAAAIDAC-FHAVNQKSLEAQPLNRIVYGLWGQGSNE 73

Query: 64  GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN-GK 122
            L++          +++ + H HGG+A V  IL +L              SR ++E   K
Sbjct: 74  DLVVCR------LDQNTVDIHCHGGMAAVERILSDL---------EEQGCSRNSWEQLAK 118

Query: 123 IDLLE--AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
               E   E    L ++ T     + +    G L S +                      
Sbjct: 119 FTRTELDVELQERLTAATTFRTAEILLRQSEGLLKSAFEAL------------------- 159

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
                    +    +    ++ I   +     G  +   +++V+ G  N GKSSL NA+ 
Sbjct: 160 ------LPVEGQSFNTGHFQSQIEKLLYWEPFGLHLVTPWRVVLAGRPNVGKSSLINAIL 213

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + +IV +  GTTRDVLT    +EG+ ++ SDTAGIRE  D +E  GI+R    ++++D
Sbjct: 214 GYERSIVFNEAGTTRDVLTATTAIEGWPIQFSDTAGIREQADALETTGIQRAEQMMQSSD 273

Query: 301 LILLLKEINSKKEISFPKNIDFI----FIGTKSDLYSTYTEEYD---HLISSFTGEGLEE 353
             L+L +++  ++    + I        +  K+DL   + +        +SS T  G++ 
Sbjct: 274 CNLILIDVSQPEQADDQRLIALWSDSILVAHKTDLPRRWKQSLPDSAVSVSSITKSGIDI 333

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
           L++++   L  +       +P   R +  L + +  L  A
Sbjct: 334 LLDRLIQKLVPEVPDQNTPVPVTSRQIQLLHRALEALNKA 373


>gi|312601166|gb|ADQ90421.1| tRNA modification GTPase mnmE [Mycoplasma hyopneumoniae 168]
          Length = 255

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 90/254 (35%), Positives = 135/254 (53%), Gaps = 7/254 (2%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           L  I  L  D    I       +I  G K  ++G  N+GKSSL N L  ++ AI+++IPG
Sbjct: 3   LPKINQLLADFDQLIKIANNSRLIYQGIKTCLVGAPNSGKSSLLNILINENKAIISEIPG 62

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TTRDV+  +  L+G L K+ DTAGIR+T + +E+ GI++++  ++ ADLIL + + + K 
Sbjct: 63  TTRDVVEGNFVLDGLLFKLFDTAGIRKTTEKIEQIGIEKSYESIKKADLILHIIDASEKN 122

Query: 313 EISF------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
             +         +  ++ I  KSDL     E  D ++ S   + +E L+ KIKSI +   
Sbjct: 123 RQNLDLKAKARPDQIYLKIYNKSDLLENQEEFKDEILISAKYQKIENLLEKIKSIFAFLG 182

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
           K   F   S +     L + +  L+  +  E   G +I   +LR+A   L  I G VD E
Sbjct: 183 KNKEFVANSFQISQIELGK-LAILDAKTSLESGFGPEIAIVDLRIAWKELKTIFGRVDDE 241

Query: 427 QLLDIIFSKFCIGK 440
            LLD IFSKFC+GK
Sbjct: 242 NLLDSIFSKFCLGK 255


>gi|149036123|gb|EDL90789.1| rCG38694, isoform CRA_b [Rattus norvegicus]
          Length = 208

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 79/163 (48%), Positives = 102/163 (62%), Gaps = 2/163 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64
           TIFA+S+G    AI++IR SGP+       +   ++P P R A LR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALREPPPARSACLRLLRHPCSGEPLDRS 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L++ FP P+SFTGED  E HVHGG AVV+G+L+ L  +P LR A  GEF+RRAF +GK+ 
Sbjct: 95  LVLWFPGPQSFTGEDCMELHVHGGPAVVSGVLQALGSVPGLRPAKAGEFTRRAFAHGKLS 154

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           L E E LADLI +ETE QRR ++  + GELS L   W   LT 
Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELSQLCQGWAKTLTK 197


>gi|121591728|ref|ZP_01678946.1| probable tRNA modification GTPase TrmE [Vibrio cholerae 2740-80]
 gi|121546410|gb|EAX56653.1| probable tRNA modification GTPase TrmE [Vibrio cholerae 2740-80]
          Length = 221

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 110/222 (49%), Gaps = 19/222 (8%)

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NAL+ K+ AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VEK GI+R + E+
Sbjct: 1   NALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEI 60

Query: 297 ENADLILLLKE-----INSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEY 339
             AD +L + +         ++I        P+NI    I  K+D            +  
Sbjct: 61  RQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPT 120

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398
              +S+ TG+G++ L   +K  +            + +RHL  L +   +L +     E 
Sbjct: 121 LIRLSAKTGQGVDALRQHLKECM-GFSGNQEGGFMARRRHLDALERAAEHLAIGQQQLEG 179

Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
               +I+AE LR+A   L +ITG    + LL  IFS FCIGK
Sbjct: 180 YMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 221


>gi|307069505|ref|YP_003877982.1| tRNA modification GTPase mnmE (trmE) [Candidatus Zinderia
           insecticola CARI]
 gi|306482765|gb|ADM89636.1| tRNA modification GTPase mnmE (trmE) [Candidatus Zinderia
           insecticola CARI]
          Length = 455

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 124/429 (28%), Positives = 217/429 (50%), Gaps = 23/429 (5%)

Query: 31  FQVCEFICKKK--KPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGG 88
           F + E +C KK     PR +   YF   +  ILD G+LI + SP S+TGE+  E   H  
Sbjct: 31  FNILEKLCNKKVKNLKPRHSYYTYFKNKE-EILDYGILIYYNSPFSYTGENIIEIQCHSN 89

Query: 89  IAVVNGILEELA---KMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRL 145
             ++N I+           L++A  GEF++RAF N KI+L++ +S+ DLI+S   +  ++
Sbjct: 90  PIIINKIINTCLFLGSNSKLKIAKRGEFTKRAFLNKKINLIQVKSIIDLINSSNYLSNKI 149

Query: 146 SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS 205
            +              ++K+  +R  IE+++ F   +   N + K++ N +  +K  I  
Sbjct: 150 FLNFYCNNFKKKIKYILNKIIKLRIIIESNIIFLNNKL--NINIKKIYNYLYIIKKSIKK 207

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            + +        N   I+I+G +N GKSSL N L+K  V+IVT I GTT D +   +  +
Sbjct: 208 LLFKINNNNNNNN-LNIIIIGRTNMGKSSLMNILSKSKVSIVTSISGTTIDKIKNSIFFK 266

Query: 266 GYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENADLILLLKEINS---KKE---ISFPK 318
             L+ + DTAGI++   + +E+  IK+++ E++ +++IL L E      KK+   I+   
Sbjct: 267 NNLINLIDTAGIKKKIYNKIERISIKKSWKEIKKSNIILYLFESYKGLLKKDYYIINKLP 326

Query: 319 NIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               IFIG K DL         +       IS    +G+  + N+I +I++N        
Sbjct: 327 KKKIIFIGNKIDLIKYKPFIKKFNNNKIIYISVKNKKGINLIKNEINNIINNNNINNNII 386

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
             ++  ++ +  + ++ + +  +N+K +   D+I + + +   +  KI G    E+LL+ 
Sbjct: 387 NKNYFYNIKNSYKIIKKIILFIINKKYNIRNDLIIQKIYILQNNFNKIFGKFTNEKLLNK 446

Query: 432 IFSKFCIGK 440
           IFSKFCIGK
Sbjct: 447 IFSKFCIGK 455


>gi|213022849|ref|ZP_03337296.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 149

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 59/151 (39%), Positives = 90/151 (59%), Gaps = 2/151 (1%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           M+H  +TI A +T      + I+R+SG     V + +   K P PR A    F  +DG  
Sbjct: 1   MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLG-KLPKPRYADYLPFKDVDGSA 58

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           LD+G+ + FP P SFTGED  E   HGG  +++ +L+ +  +P +R+A PGEFS RAF N
Sbjct: 59  LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMS 151
            K+DL +AE++ADLI + +E   R ++  ++
Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLT 149


>gi|255017531|ref|ZP_05289657.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL F2-515]
          Length = 158

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 92/158 (58%), Gaps = 4/158 (2%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLY 158
           G+IDL +AE++ DLI ++T+    +++  M G LS L 
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLI 158


>gi|270690959|ref|ZP_06222897.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
 gi|270316102|gb|EFA28108.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
          Length = 155

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/155 (42%), Positives = 93/155 (60%), Gaps = 1/155 (0%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64
           KETI A +T      I I+R+SGP   +V + I   K P PR A    F   DG ILD+G
Sbjct: 2   KETIVAQATAPGRGGIGILRVSGPLATKVAQAILG-KCPKPRMADYLPFKDADGTILDQG 60

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           + + F SP SFTGED  E   HGG  V++ +L+ + ++  +RLA PGEFS +AF N K+D
Sbjct: 61  IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYG 159
           L +AE++ADLI + +E   R +++ + GE S    
Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVN 155


>gi|148668863|gb|EDL01031.1| GTP binding protein 3, isoform CRA_c [Mus musculus]
          Length = 306

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 89/299 (29%), Positives = 146/299 (48%), Gaps = 28/299 (9%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
              +++EA +DF E+++++    ++   ++  L+  + SH+   + G+ + +G  +V+ G
Sbjct: 11  QALAYVEAYIDFGEDDNLEEGVLEQADREVRALEVALGSHLRDARRGQRLLSGANVVVTG 70

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             NAGKSSL N L++K V+IV+  PGTTRDVL   +DL G+ V +SDTAG+RE    VE+
Sbjct: 71  PPNAGKSSLVNLLSQKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGAVEQ 130

Query: 287 EGIKRTFLEVENADLIL-----------------------LLKEINSKKEISFPKNIDFI 323
           EG++R    +E AD+IL                       LL +            ++  
Sbjct: 131 EGVRRARHRLEQADIILGVLDASDLASSSSCSFLDTVVTPLLAQSQDSGGQRLLLLLNKS 190

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLY 381
            + + +            L+S  TG G++ L+  +K+ L+           + +  RH Y
Sbjct: 191 DLLSANAPACDIALPPHLLLSCHTGAGMDSLLQALKTELAAVCGDPSTGPPLLTRVRHQY 250

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           HL   +  L    L      L + AE LR A   L  +TG    E++LD+IF  FC+GK
Sbjct: 251 HLQGCLDALGHYQLA---TDLALAAEALRQARRQLNHLTGGGGTEEILDLIFQDFCVGK 306


>gi|87308881|ref|ZP_01091020.1| tRNA modification GTPase TrmE [Blastopirellula marina DSM 3645]
 gi|87288592|gb|EAQ80487.1| tRNA modification GTPase TrmE [Blastopirellula marina DSM 3645]
          Length = 383

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 104/402 (25%), Positives = 163/402 (40%), Gaps = 48/402 (11%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGL 56
           MN   +TI  + T +  SAI+ I + GP+     +       K          +      
Sbjct: 1   MNIAADTIAVLVTPSGRSAIATIVVVGPTADAAVDRHFFPLGKTNASTSSVGDILVGHWR 60

Query: 57  DG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           D      + L++      S TG +  E H HGG+A    IL  L +    R     E++ 
Sbjct: 61  DSAEGQGEELVV------SRTGPERLEVHCHGGVAASRRILNHL-QAAGCREIAWTEYAE 113

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           R     +     A +   L  + T       ++  +G L S             + I A 
Sbjct: 114 RT----EAAPTIAAARIALARARTSRTAAHLLDQYNGALQSE-----------LASIAAL 158

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LD  E  D Q                 I++ ++  + G  +   +K+VI G  N GKSSL
Sbjct: 159 LDSQETSDAQL---------------RITALLATARFGLHLTRPWKVVIAGRPNVGKSSL 203

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL   + AIV D PGTTRD +T     +G+ V+++DTAG+RE+DD +E+EG+ R    
Sbjct: 204 INALVGYERAIVFDQPGTTRDAVTAAAAFDGWPVELADTAGLRESDDAIEREGVSRARQL 263

Query: 296 VENADLILLLKEINS----KKEISFPKNIDFIFIGTKSDLY--STYTEEYDHLISSFTGE 349
              ADLILL  + ++    + +     + D I +  K DL   S+        +S+  G+
Sbjct: 264 QSEADLILLAFDASAAWTDEDQQLVDAHPDAIIVHNKCDLPISSSGHRPAGLKVSAQRGD 323

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
           G+  LI  I   L          +      +  L Q  R++ 
Sbjct: 324 GIALLIETIGHALVPTPPTPETPLLFTDEQVAALRQAARWIA 365


>gi|237756915|ref|ZP_04585387.1| probable tRNA modification GTPase TrmE [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237690916|gb|EEP60052.1| probable tRNA modification GTPase TrmE [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 157

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/160 (44%), Positives = 100/160 (62%), Gaps = 4/160 (2%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGR 59
           MN  K+TI A +T  +PSAISI+R+SG    ++ + I    +K  PRK      F   G 
Sbjct: 1   MN--KDTIVANATPLIPSAISIVRISGDKALEIGKKIFSLPEKITPRKVYFGKIFNHKGE 58

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
           I+D+GL + F  P+SFTGED  E + HG + VV  ILE    M   RLA PGEF+ RAF 
Sbjct: 59  IIDEGLFVYFQKPKSFTGEDLVEIYPHGSVPVVKSILEACF-MHGARLARPGEFTERAFL 117

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYG 159
           NGKIDLL+AE++ADLI++++E   ++++  + G+LS    
Sbjct: 118 NGKIDLLQAEAIADLINAKSEKAAKIAVSILEGKLSKQIN 157


>gi|324512672|gb|ADY45241.1| tRNA modification GTPase mnmE [Ascaris suum]
          Length = 308

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 84/313 (26%), Positives = 144/313 (46%), Gaps = 25/313 (7%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +   S ++        + L  +   +EA +DF+   D   F     L+ +  + +++   
Sbjct: 2   LAVRSNQIGLAVSSIRESLVQLACSLEAGIDFA---DDVPFDWDSFLSHVRDVTSELKMI 58

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
             + + G +I +G ++V+LG +N GKSSL N +A++DVAIV+++ GTTRD L   ++L  
Sbjct: 59  EQRAQKGCLIIDGIRVVMLGQTNVGKSSLLNCIAERDVAIVSEVEGTTRDALEARIELAS 118

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------ 320
             V  +DTAGIR   D +E E I RT      A ++L + + +   +I+   ++      
Sbjct: 119 VPVIFTDTAGIRSAHDFLEAESISRTIARAAEAHVLLPVVDASKCVDIAAEVDVLLRQCH 178

Query: 321 -----DFIFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKS-ILSNKFK 367
                  + +  K DL   +               S     G+  ++  +K  I +    
Sbjct: 179 CEDASRVVVVCNKIDLIPAHMHHVVSSLPWKVVFTSCINRTGITNILEAVKEQIAALCPD 238

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQ 427
           +   ++ S  R    LS  V  LE            + AE +R AS  +G+I+G +  E+
Sbjct: 239 EGDDALLSRYRQRILLSDAVSLLEQVQSTSDAA---LAAEYVREASALIGEISGAIVNEE 295

Query: 428 LLDIIFSKFCIGK 440
           +LD IFS FCIGK
Sbjct: 296 ILDRIFSSFCIGK 308


>gi|289808227|ref|ZP_06538856.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 185

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 66/183 (36%), Positives = 110/183 (60%), Gaps = 1/183 (0%)

Query: 41  KKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA 100
           K P PR A    F  +DG  LD+G+ + FP P SFTGED  E   HGG  +++ +L+ + 
Sbjct: 4   KLPKPRYADYLPFKDVDGSALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIL 63

Query: 101 KMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQ 160
            +P +R+A PGEFS RAF N K+DL +AE++ADLI + +E   R ++  + G  S+    
Sbjct: 64  TLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNH 123

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
            ++ LTH+R ++EA +DF + E++   S  ++   +  +  D+ +  ++ + G ++R G 
Sbjct: 124 LVEALTHLRIYVEAAIDFPD-EEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGM 182

Query: 221 KIV 223
           K+V
Sbjct: 183 KVV 185


>gi|291520339|emb|CBK75560.1| small GTP-binding protein domain [Butyrivibrio fibrisolvens 16/4]
          Length = 273

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 87/264 (32%), Positives = 137/264 (51%), Gaps = 15/264 (5%)

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
            DLISS +E+  + S++ +SG L+ +     DK+ +  ++IE+ LD  E  D+ ++  + 
Sbjct: 1   MDLISSNSELAMKNSIKQLSGSLNKIIVDLRDKILYETAYIESALDDPEHYDLTDYPVEL 60

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
             N +  + + +   I     G I++ G   +ILG  NAGKSSL N L++++ AIVTDIP
Sbjct: 61  -KNKVSDMISRVDDLIDSFNSGHILKEGINTLILGKPNAGKSSLLNTLSRRERAIVTDIP 119

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           GTTRD L   + + G  + I DTAGIRETDDIVEK G+ +    +++ADLIL + + +  
Sbjct: 120 GTTRDTLEEQITINGVSLNIIDTAGIRETDDIVEKIGVDKALDSIDDADLILFVIDSSRP 179

Query: 312 KE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL--------ISSFTGEGLEELINK 357
            +      I    +   I +  KSDL S  +EE  +          SS + +GL+ L +K
Sbjct: 180 LDENDHFIIDKIMDKKVIILLNKSDLVSKISEEEIYKKYNKPVISFSSVSLDGLKALESK 239

Query: 358 IKSILSNKFKKLPFSIPSHKRHLY 381
           I  +       L        +   
Sbjct: 240 ITDMFLKVRLNLMILYILQTQDRQ 263


>gi|255522653|ref|ZP_05389890.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-175]
          Length = 146

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/146 (39%), Positives = 86/146 (58%), Gaps = 4/146 (2%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60
           E +TI A+ST     AI+IIRLSGP   Q+ + I   K       S    +G    DG +
Sbjct: 2   EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
           +++ ++ V  +P +FT ED  E + HGGI  VN +L+ L +     LA PGEF++RAF N
Sbjct: 62  IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120

Query: 121 GKIDLLEAESLADLISSETEMQRRLS 146
           G+IDL +AE++ DLI ++T+    ++
Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVA 146


>gi|169596815|ref|XP_001791831.1| hypothetical protein SNOG_01177 [Phaeosphaeria nodorum SN15]
 gi|160707379|gb|EAT90826.2| hypothetical protein SNOG_01177 [Phaeosphaeria nodorum SN15]
          Length = 385

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 171/385 (44%), Gaps = 72/385 (18%)

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +DL + ESL + +S+ TE QR+LS+ G +  L+  Y  W   L   R  +EA +DFSE++
Sbjct: 1   MDLPQIESLGETLSASTEQQRKLSVRGTTSSLAVRYEHWRQLLLAARGELEALIDFSEDQ 60

Query: 183 DVQN---FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
                       V   +  L+  + +H++    GE++RNG  + +LG  NAGKSSL N +
Sbjct: 61  HFDESPAILCASVAEQVRALRTQMEAHVANAVRGELLRNGISVALLGAPNAGKSSLLNRI 120

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-------ETDDIVEKEGIKRT 292
             +D AIV+   GTTRDV+ + +DL G+LVKI D AG+R       E    VE+EGIKR 
Sbjct: 121 VGRDAAIVSQEAGTTRDVVEVGVDLGGWLVKIGDMAGLRRAGLVGAEAVGAVEQEGIKRA 180

Query: 293 FLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYT-EEYDHLI 343
                 +D+++++++  ++ +    +         ++ +    K D        E+   +
Sbjct: 181 KQRALESDVLIVVQDATAETDPEVMETAKKCVDLGVNVVVAINKIDQLDNVAFLEHTWAM 240

Query: 344 SSFTGEGLEE--------------------LINKIKSILSNKFKKLPFSIPSH------- 376
              +  G+                       I    + L + FK +  ++          
Sbjct: 241 RMQSELGISSDRVTFISCKASAAATSSDPGHIQSFLTTLLDVFKSMTAALVPESDPDPGL 300

Query: 377 --------KRHLYHLSQTVRYLEMASLN---------------EKDCGLDIIAENLRLAS 413
                   +R    LS+ + +LE                      +  + + AE+LR A+
Sbjct: 301 WQESLGATERQRLLLSECLGHLETFLTTVDPHLLASEPSPTDPNDEIDIVVAAESLRSAA 360

Query: 414 VSLGKITGC---VDVEQLLDIIFSK 435
            +L +ITG     DVE++L ++F K
Sbjct: 361 EALARITGRGEGGDVEEVLGVVFEK 385


>gi|32474218|ref|NP_867212.1| tRNA modification GTPase [Rhodopirellula baltica SH 1]
 gi|32444756|emb|CAD74757.1| probable tRNA modification GTPase [Rhodopirellula baltica SH 1]
          Length = 426

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 102/425 (24%), Positives = 177/425 (41%), Gaps = 52/425 (12%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGR 59
           M    ET     TG   SA+++I L GP   Q  +             S     +G    
Sbjct: 23  MTSTNETTATRLTGVGLSAVAVIGLRGPRALQCVQDCFTPATNASSSLSAGQVRYGTWKS 82

Query: 60  ILD---KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             D   + +++   +  SF      E H HGG A V+ IL  L     +       + + 
Sbjct: 83  SDDGPGESIVLTPMTDGSF------EIHGHGGEAAVSAILASLTDR-GVESVESSTWQKS 135

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           A     I L EAE +  L    T  Q  ++++   G+L+     W+ ++  + S      
Sbjct: 136 A----PILLSEAEHV--LQRCVTSQQAAVALDQTRGQLAQWGQHWLQRIDEVSSS----- 184

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
                    +  S+E  + +  L  D  +  + G+ G  +    ++V+ G  N GKSSL 
Sbjct: 185 ---------DELSEETESLLAALCKDAQTIAANGERGVRLTEPRRLVLAGPPNVGKSSLM 235

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD------IVEKEGIK 290
           N +     +I  D  GTTRDVL  D  + G  V++SDTAGIRET         +E+EGI+
Sbjct: 236 NQIVGFRRSITHDSAGTTRDVLQCDTVIAGVPVRMSDTAGIRETSHLTESSVAIEREGIR 295

Query: 291 RTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYS----TYTEEY 339
           R  + VE+ADL+L++ + ++       ++ +        + +  K+DL S    +   E 
Sbjct: 296 RASVAVESADLLLIVCQPSTLIDLQDFRRSLPVSNKTHVVEVLNKADLLSDNAKSIANEI 355

Query: 340 DHLISSFTGE--GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR--YLEMASL 395
           +H   +   +  G+ +L+  + + L+         +P  +R L   +Q  +   L+ A+ 
Sbjct: 356 EHQTIASEDDDPGVGKLMKTLAAHLTATLPPRHSPVPICQRQLELTNQLCQTTSLKNAAT 415

Query: 396 NEKDC 400
             +  
Sbjct: 416 MLRQL 420


>gi|327539637|gb|EGF26245.1| tRNA modification GTPase TrmE [Rhodopirellula baltica WH47]
          Length = 404

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 103/424 (24%), Positives = 175/424 (41%), Gaps = 53/424 (12%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGR 59
           M    ET     TG   SA+++I L GP   Q  +             S     +G    
Sbjct: 1   MTSTNETTATRLTGVGLSAVAVIGLRGPRALQCVQDCFTPATNASSSLSAGQVRYGTWKS 60

Query: 60  ILD---KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116
             D   + +++   +  SF      E H HGG A V+ IL  L     +       + + 
Sbjct: 61  SDDGPGESIVLTPMTDGSF------EIHGHGGEAAVSAILASLTDR-GVESVESSTWQKS 113

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           A     I L EAE +  L    T  Q  ++++   G+L+    QW+ ++    S  E   
Sbjct: 114 A----PILLSEAEYV--LQRCVTGQQAAVALDQTRGQLAQWGQQWLQRIDEFSSSDE--- 164

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
                       S+E  + +  L  D  +  + G+ G  +    ++V+ G  N GKSSL 
Sbjct: 165 -----------LSEESESLLAALCKDAQTIATNGERGVRLTEPRRLVLAGPPNVGKSSLM 213

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD------IVEKEGIK 290
           N +     +I  D  GTTRDVL  D  + G  V++SDTAGIRET         +E+EGI+
Sbjct: 214 NQIVGFRRSITHDSAGTTRDVLQCDTVIAGVPVRMSDTAGIRETSHLTESSVAIEREGIR 273

Query: 291 RTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYS----TYTEEY 339
           R  + +E+ADL+L++ + ++       ++ +        + +  K+DL S    +   E 
Sbjct: 274 RASVAIESADLLLIVCQPSTLIDLQDFRRSLPVSNKTHVVEVLNKADLLSDNTKSIAGEI 333

Query: 340 DHLISSFTGE--GLEELINKIKSILSNKFKKLPFSIPSHKRHLY---HLSQTVRYLEMAS 394
           +H   +   +  G+ +L+  + + L+         +P  +R L     L Q       A+
Sbjct: 334 EHQTIASEDDDPGVGKLMKTLAAHLTATLPPRHSPVPICQRQLELTNQLCQATSLKNAAT 393

Query: 395 LNEK 398
           +  +
Sbjct: 394 MLRQ 397


>gi|116334903|ref|YP_802398.1| tRNA modification GTPase [Candidatus Carsonella ruddii PV]
 gi|123126218|sp|Q05FY9|MNME_CARRP RecName: Full=tRNA modification GTPase mnmE
 gi|116235184|dbj|BAF35032.1| tRNA modification GTPase [Candidatus Carsonella ruddii PV]
          Length = 438

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 116/454 (25%), Positives = 198/454 (43%), Gaps = 38/454 (8%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
           TIF+  T      + +IR+SG +   + + I K K    + A+    F LD   +D  ++
Sbjct: 3   TIFSRITPLGNGTLCVIRISGKNVKFLIQKIVK-KNIKEKIATFSKLF-LDKECVDYAMI 60

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126
           I F  P +FTGED  EFH+H    +V  I+  L      R A  GEF  R + NGKI L+
Sbjct: 61  IFFKKPNTFTGEDIIEFHIHNNETIVKKIINYLLLNK-ARFAKAGEFLERRYLNGKISLI 119

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           E E + + I  + E   +L+          +      K+  +   I  ++          
Sbjct: 120 ECELINNKILYDNENMFQLTKNSEKKIFLCIIKNLKFKINSLI--ICIEIANFNFSFFFF 177

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                +      L   +   I +  +   ++  + I+ILG  N GKS+LFN +  +  +I
Sbjct: 178 NDFLFIKYTFKKLLKLLKILIDKITVINYLKKNFTIMILGRRNVGKSTLFNKICAQYDSI 237

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLL 305
           VT+IPGTT+++++  + +    +K+ DTAG++  T +++EK GI +   ++   +LIL +
Sbjct: 238 VTNIPGTTKNIISKKIKILSKKIKMMDTAGLKIRTKNLIEKIGIIKNINKIYQGNLILYM 297

Query: 306 KEINSKKEISF---------PKNIDFIFIGTKSDLYSTYTEEY------DHLISSFTGEG 350
            +  + K I F          K  + I +  KSD+       +        LISS  G  
Sbjct: 298 IDKFNIKNIFFNIPIDFIDKIKLNELIILVNKSDILGKEEGVFKIKNILIILISSKNGTF 357

Query: 351 LEELINKIKSILSN----KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
           ++ L   I  I+ N    K       I  +K   ++              E  C  D++ 
Sbjct: 358 IKNLKCFINKIVDNKDFSKNNYSDVKILFNKFSFFY-------------KEFSCNYDLVL 404

Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             L     ++ K+TG    +++++  F  FCIGK
Sbjct: 405 SKLIDFQKNIFKLTGNFTNKKIINSCFRNFCIGK 438


>gi|320102486|ref|YP_004178077.1| small GTP-binding protein [Isosphaera pallida ATCC 43644]
 gi|319749768|gb|ADV61528.1| small GTP-binding protein [Isosphaera pallida ATCC 43644]
          Length = 404

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 98/419 (23%), Positives = 165/419 (39%), Gaps = 75/419 (17%)

Query: 13  TGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----------PRKASLRYFFGLDG--- 58
           T   P A++++RL GP    + + + +  +             PR   L  F        
Sbjct: 15  TAPGPGALAVVRLFGPDALSLADRVFRPSRQPERPLSATPPRRPRLGRLGTFRSPTPTTP 74

Query: 59  -----------------RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK 101
                             + D+ + I F            EF  HGG+A    + E + +
Sbjct: 75  TGLTDNSDTHNHNHNRVEVGDEVVAIRFDD--DPCQPSQVEFQGHGGLAARQAV-EAILE 131

Query: 102 MPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQW 161
               R   P    R   E   +  ++A++  DL  + T     + ++   G L       
Sbjct: 132 AAGSRPV-PARVWR--IETQGLTTIQADAYDDLAYAPTRRTAAILLDQALGALDR----- 183

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
                        DLD  E  +  + +    L          ++   + ++G  + +G+ 
Sbjct: 184 -------------DLDSLERLEADDPACAADLR---------ATLFQRFEVGSRLISGWN 221

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G  N GKSSL NALA    AIV+   GTTRDVLT+ L  +G+ + + DTAG+R+  
Sbjct: 222 VALAGRPNVGKSSLMNALAGHARAIVSPQAGTTRDVLTVPLACDGWPMTLFDTAGLRDQP 281

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSKKE----ISFPKNIDFIFIGTKSDLYSTYT 336
            D +E +GI R       ADL+LLL + +   E           + + + TK+DL   + 
Sbjct: 282 SDDLEAQGILRARNAQTQADLVLLLLDSSQPLEPLDLALLHTYPNALLVATKADLAPHWR 341

Query: 337 EE------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
            E          +S+ TGEGL+ L++++   L         ++P    HL  L++T R 
Sbjct: 342 AEDLPTTRKLVSLSALTGEGLDRLLDRLAQRLVPNPPPAGSAVPFRIDHLTQLNRTNRA 400


>gi|296122241|ref|YP_003630019.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776]
 gi|296014581|gb|ADG67820.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776]
          Length = 411

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 162/401 (40%), Gaps = 50/401 (12%)

Query: 9   FAVSTGALPSAISIIRLSGPSCF--QVCEFICK--KKKPFPRKASLRYFFGLDGRILDKG 64
            A  + A  SAI+++R+ G         + +     +  +         +G  G+   +G
Sbjct: 34  AAQWSPAGRSAIALVRVHGDLSRLSSSAQQLFHSAGQVNWTSLPEKSVHYGHWGQEHAEG 93

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           +++      +   +D  E   HGG A V  +L  L  +  +      +  ++     + +
Sbjct: 94  VVL------TQIEKDVLEISCHGGTAAVENLLTSLQGIGVI-----VQSWQQQ-LASRKN 141

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            L AE    L  + T    +L +                          AD+++  ++  
Sbjct: 142 YLVAECTEVLTRAVTVRSAQLILAHS---------------LEKLPEFAADINWPADD-- 184

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
                             +   +   + G  +  G+ + I+G  NAGKSSL N L   + 
Sbjct: 185 ---------QSRNEAIRSVELSLKWWETGRRLTEGWVVSIVGLPNAGKSSLINRLLGYER 235

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +IV D PGTTRD++     + G+LV ++DTAG+RE++D +E EGI++T      ADL++ 
Sbjct: 236 SIVIDQPGTTRDIVRASTAIGGWLVHLADTAGVRESEDPLEAEGIQKTMATAGQADLVMY 295

Query: 305 LKEINSK---KEISFPKNI-DFIFIGTKSDLY--STYTEEYD--HLISSFTGEGLEELIN 356
           + + +      ++   +   D + +  K DL       +++     IS+ T +G+  L++
Sbjct: 296 VVDASQSLQAADVQLSRQFRDVVVLLNKCDLPMDRDVLQQWPDALPISTVTSQGIMPLLD 355

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
            +   L  +       IP   R    L + +  L  + +++
Sbjct: 356 ILARRLMRRGPAPDVMIPVTLRQQSCLQKVLTALRASDIDQ 396


>gi|10802646|gb|AAG23546.1|AF244597_1 thiophene degradation protein F [Carboxydothermus hydrogenoformans]
          Length = 184

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 9/186 (4%)

Query: 25  LSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---GRILDKGLLIVFPSPESFTG 77
           LSG     +   I +  K       +  +L Y   +D   G + D+ L+ +   P ++T 
Sbjct: 1   LSGDRALDIISRIFRPYKKKDVKNVKTHTLHYGHIVDPDTGEVYDEVLVSIMKKPNTYTR 60

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137
           ED  E + HGGI V + ILE + K    RLA PGEF++RAF NG+IDL +AE++ D+I++
Sbjct: 61  EDIVEINCHGGIVVTSKILELVLK-QGARLAEPGEFTKRAFLNGRIDLSQAEAVIDIITA 119

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           +T +  + + + +SG L     +  D++  + + + A +DF E +DV      ++L    
Sbjct: 120 KTMLANKYAQKQLSGYLGQKMRKLKDRMMELLAHLLALIDFPE-DDVDELERWQMLESAK 178

Query: 198 FLKNDI 203
            +  +I
Sbjct: 179 EILKEI 184


>gi|62719467|gb|AAX93334.1| tRNA modification GTPase TtrmE [Lactobacillus sanfranciscensis]
          Length = 232

 Score =  173 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 19/233 (8%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  N   + +  +L  ++ AIVTD+PGTTRDVL   +++ G  + + DTAGIRET+D VE
Sbjct: 1   GRPNVV-NQVVESLLHEEKAIVTDVPGTTRDVLDEYVNVAGVPLHLIDTAGIRETEDKVE 59

Query: 286 KEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           K G+ R+   ++ ADL+LL+   +       ++ +   ++   + +  K+DL      E 
Sbjct: 60  KIGVDRSRAAIKKADLVLLVLNSSEPLTDEDRQLLDLTRDSKRVILLNKTDLPMKLDIEK 119

Query: 340 D---------HLISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVR 388
                        S+    G + L + I  +   K         + ++ RH+  L Q + 
Sbjct: 120 IKAEYGNSDMIKTSAMAENGTKTLEDTISQMFFTKGIASTQNSVMVTNARHISLLQQALD 179

Query: 389 YLEMASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++           +DI+  +L+ A   LG ITG    ++L+D +F +FCIGK
Sbjct: 180 SVQTVIDGIGAGLPVDIVQIDLQSAWDDLGAITGDSYDDELMDQLFDQFCIGK 232


>gi|242209081|ref|XP_002470389.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730559|gb|EED84414.1| predicted protein [Postia placenta Mad-698-R]
          Length = 647

 Score =  171 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/186 (39%), Positives = 111/186 (59%), Gaps = 7/186 (3%)

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
            PGE SR A +  ++DL + E L DLI +ETE QRR +++   G     + Q  +++   
Sbjct: 468 RPGELSRCASKGRRLDLTQVEGLKDLIYAETESQRRAALKAAGGITRDRFEQLREEIIQC 527

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
                   DF E ED++  +       +  L   + +H++  + GEI+R+G ++ I G  
Sbjct: 528 T-------DFEEGEDIEEGTYDLARLRVQDLCRTLEAHLADNRRGEILRSGIRLAIFGPP 580

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           NAGKSSL N LA+++ AIVT IPGTTRD+L + LD+ G  V I+DTAGIR+T+D+VE  G
Sbjct: 581 NAGKSSLLNFLAQREAAIVTPIPGTTRDILELSLDIGGLPVLIADTAGIRQTEDVVESIG 640

Query: 289 IKRTFL 294
           ++R   
Sbjct: 641 VERAEK 646


>gi|283778508|ref|YP_003369263.1| small GTP-binding protein [Pirellula staleyi DSM 6068]
 gi|283436961|gb|ADB15403.1| small GTP-binding protein [Pirellula staleyi DSM 6068]
          Length = 407

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 95/397 (23%), Positives = 154/397 (38%), Gaps = 69/397 (17%)

Query: 27  GPSCFQVCEFICKKK-------KPFPRKASLRYFF---GLDGRILDKGLLIVFPSPESFT 76
           G +         +             R  S+        LDG   ++ L++   +P    
Sbjct: 31  GEAALATLARTFRPLGTKQQTLPLKERVGSVLVGHWQSDLDGEA-EEELVVALVAP---- 85

Query: 77  GEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLIS 136
             D+AE   HGG + V  I + LA+     L +P  +  R+      D L+ +++  L  
Sbjct: 86  --DAAEISCHGGRSAVARITQSLAR-EGCVLVDPALYVARS----TCDALKLQAMERLTR 138

Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI 196
           ++T +     ++   G LSS     ID L                             D+
Sbjct: 139 AKTSLAAAHLLDQTRGALSSAVRYMIDSL--------------------------ERGDV 172

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
              +  I   ++  +    +   Y++ I+G  NAGKS+L N L     A+V D PGTTRD
Sbjct: 173 AGARRQIKDLLTTARQAIHLTEPYRVTIVGRPNAGKSALLNQLVGYARAMVFDQPGTTRD 232

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS- 315
           V+ +   L GY V+ISDTAG+RET + +E+EGI+RT   +   DL LL+ + ++      
Sbjct: 233 VVQVTTALGGYAVEISDTAGVRETSEPIEREGIERTLASIATCDLALLVFDQSAPLTADD 292

Query: 316 -------FPK-NIDFIFIGTKSDLYS------------TYTEEYDHLISSFTGEGLEELI 355
                   P+     I +G KSDL              T         S+ TG G+ EL+
Sbjct: 293 QAFLAQVLPRLTAALIVVGNKSDLPPQCSFEQLAAINTTIARAPSLSASALTGAGIRELL 352

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
             ++  L          +   +       Q +  L+ 
Sbjct: 353 ALLEKQLVPTPLAQGSPLLFSRELEQAFRQILAALDQ 389


>gi|20146198|dbj|BAB88986.1| thiopen and furan oxidase homolog [Bacillus cereus]
          Length = 141

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 82/142 (57%), Gaps = 7/142 (4%)

Query: 4   EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58
           E +TI A+ST     AI+I+R+SG    +    I K K       S    +G        
Sbjct: 2   EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKD-LTEVPSHTIHYGHIVDLDTN 60

Query: 59  RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118
           +++++ ++ +  +P +FT E+  E + HGG+  VN +L+ L     +RLA PGEF++RAF
Sbjct: 61  QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119

Query: 119 ENGKIDLLEAESLADLISSETE 140
            NG+IDL +AE++ DLI ++T+
Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTD 141


>gi|23009194|ref|ZP_00050334.1| COG0486: Predicted GTPase [Magnetospirillum magnetotacticum MS-1]
          Length = 141

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/140 (45%), Positives = 87/140 (62%), Gaps = 1/140 (0%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           ETI+A+++ A  S +++ RLSG         +  +  P PRKA         G ++D GL
Sbjct: 3   ETIYALASAAGRSGVAVWRLSGEGSAAALTALTGQLLPEPRKAVRARLRDGIGEVIDDGL 62

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125
           ++ FP+P SFTGED AE H+HGG AV   +   L ++  LR A PGEFSRRAF NGK+DL
Sbjct: 63  VLWFPAPHSFTGEDVAELHLHGGRAVAAALTARLGEL-GLRPAEPGEFSRRAFLNGKLDL 121

Query: 126 LEAESLADLISSETEMQRRL 145
             AE++ADL+ +ET  QRR 
Sbjct: 122 TRAEAIADLVDAETSAQRRQ 141


>gi|121591475|ref|ZP_01678748.1| probable tRNA modification GTPase TrmE [Vibrio cholerae 2740-80]
 gi|121546677|gb|EAX56859.1| probable tRNA modification GTPase TrmE [Vibrio cholerae 2740-80]
          Length = 158

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 85/146 (58%), Gaps = 1/146 (0%)

Query: 28  PSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHG 87
           P    V + +  +    PR A    F   DG+ LD+G+ + FP+P SFTGED  E   HG
Sbjct: 12  PLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGIALFFPNPHSFTGEDVLELQGHG 70

Query: 88  GIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSM 147
           G  V++ ++  + ++  +R A PGEFS RAF N K+DL +AE++ADLI + +E   + ++
Sbjct: 71  GPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQAEAIADLIDASSEQAAKSAL 130

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIE 173
           + + GE S      ++ L H+R +++
Sbjct: 131 QSLQGEFSKRIHTLVESLIHLRIYVK 156


>gi|296005027|ref|XP_002808852.1| GTPase, putative [Plasmodium falciparum 3D7]
 gi|225632248|emb|CAX64129.1| GTPase, putative [Plasmodium falciparum 3D7]
          Length = 830

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 104/428 (24%), Positives = 182/428 (42%), Gaps = 92/428 (21%)

Query: 105 LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK 164
           +R +  GEF+RRAFEN K+ LL+ E L +L+  + ++Q+++++  M+G    +Y +  + 
Sbjct: 403 IRESYKGEFTRRAFENNKMSLLQIEGLKELLFCKQKVQKQIALNYMNGYAKDIYLKLKEL 462

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHIS---QGKLGEIIRNGYK 221
           L  +  + E  +DF EE        +E+ N +L    +  +HI+   +    E I N + 
Sbjct: 463 LKELLVYTELKIDFEEEHITSPKEKEEIQNMVLRKIREAINHINYILKKNNVEDISNSFD 522

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I++ G+ N+GKS+L N +   D++IVT+I G+T D++  ++ +      + D+AG+ +++
Sbjct: 523 ILLFGNVNSGKSTLMNNICNNDISIVTNIKGSTLDIIQKNIQIFNNSYNLCDSAGVIKSE 582

Query: 282 DIV------------------------EKEGIKRTFLEVENADLILLLK----------- 306
            I                         E  GIK+T   ++N  +   +            
Sbjct: 583 KIKSLNEKNYILYEKKKKKKKNIHKTLESMGIKKTLSFLKNNCISAFVLLNIKNYKKELI 642

Query: 307 ---------------------EINSKKEISFPKNIDFIFIGTKSDLYST----------- 334
                                E+N  K  +  K   FIF   K DL ST           
Sbjct: 643 NIIKILNHNFKGKINQENNKGELNKNKMTNKIKIPYFIFCLNKCDLVSTCKFSKIKRNVK 702

Query: 335 -------------YTEEYDHLISSFTGEGLEELIN-------KIKSILSNK--FKKLPFS 372
                           +    ISS  G  ++ L+        K + +L +K         
Sbjct: 703 KCLLANLSTHILKRCSKKIFFISSKNGYNIDTLLKYFNEKMIKKRKLLFDKKYSNGNNIM 762

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432
               +RH  +L + + +L     N  +   DII+E ++LA  SL +I G +  EQ+L+ I
Sbjct: 763 FLPFERHKLYLKKAINHLLFIQKNIHNLTFDIISEEIKLAVNSLNRIIGTIKNEQILNKI 822

Query: 433 FSKFCIGK 440
              FCIGK
Sbjct: 823 LDSFCIGK 830



 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 40  KKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL 99
           +K    RK  +   +  +  I+D  +   F  P+S+TGE+  E + HG + +V  I+  +
Sbjct: 272 RKNLEERKLYMGKLYDKNNDIIDIVMYSYFKEPKSYTGEELVEIYCHGNMLIVKEIMSAI 331



 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK 42
           +  +KETI+A+S+G + SAIS+IR+SGP    + E +  K K
Sbjct: 157 IMSDKETIYALSSGNVQSAISVIRISGPLSKMILEILLHKGK 198


>gi|207741911|ref|YP_002258303.1| trna modification gtpase protein [Ralstonia solanacearum IPO1609]
 gi|206593297|emb|CAQ60224.1| probable trna modification gtpase protein [Ralstonia solanacearum
           IPO1609]
          Length = 192

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 4/122 (3%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66
            I A++T      I ++R+SGP    V + +C +    PR+A+   F   DG  +D+G+ 
Sbjct: 35  PIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGR-LLQPRQAAYLPFLDADGHAIDRGIA 93

Query: 67  IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA---KMPNLRLANPGEFSRRAFENGKI 123
           + FP+P S+TGED  E   HGG  V+  +L       +   +R+A PGEF+RR F N K+
Sbjct: 94  LWFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGREIGVRVAEPGEFTRRPFLNDKM 153

Query: 124 DL 125
           DL
Sbjct: 154 DL 155


>gi|315305259|ref|ZP_07875214.1| tRNA modification GTPase MnmE [Listeria ivanovii FSL F6-596]
 gi|313626371|gb|EFR95549.1| tRNA modification GTPase MnmE [Listeria ivanovii FSL F6-596]
          Length = 208

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 17/208 (8%)

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-- 307
           I GTTRD++   +++ G  +++ DTAGIRET+DIVEK G++R+   + +AD ILL+    
Sbjct: 1   IAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADADFILLVLNQN 60

Query: 308 ----INSKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHLISSFTGEGLEEL 354
               +  +          ++ +  K+DL +                   S    EGLE L
Sbjct: 61  EELTVEDEALFEAAAGHHYVVVLNKTDLETKLDINRVRKLAGNNPIVSTSLVNDEGLEAL 120

Query: 355 INKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENLRLA 412
              IK++           +  S+ RH+  L Q +  L   +   +    +DI+  ++  A
Sbjct: 121 EEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALESLNAVTTGIQLGMPVDIVQIDMTRA 180

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              LG+ITG    ++LLD +F++FC+GK
Sbjct: 181 WDLLGEITGDSVQDELLDQLFNQFCLGK 208


>gi|218281198|ref|ZP_03487722.1| hypothetical protein EUBIFOR_00285 [Eubacterium biforme DSM 3989]
 gi|218217586|gb|EEC91124.1| hypothetical protein EUBIFOR_00285 [Eubacterium biforme DSM 3989]
          Length = 161

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 3/153 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF--GLDGRILDKG 64
           TI A+ST     AISIIRLSG    ++ + I  +     +  ++ Y F    D   +D+ 
Sbjct: 5   TIAAISTSLQDGAISIIRLSGDQAIEITQKIFDRNIMNAKSHTIHYGFIIDPDKNPVDEV 64

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           L+ +F +P+++T ED  E + HGG  +   IL  +A      LA PGEF++RAF +G+ID
Sbjct: 65  LISIFRAPKTYTREDIVEINCHGGTFITRKILS-MALSAGADLAKPGEFTQRAFYHGRID 123

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSL 157
           L +AE++ D+I +       +++ G+ G +  +
Sbjct: 124 LSQAEAVQDMIEASNNTAATMAIHGIKGSVKKI 156


>gi|284097722|ref|ZP_06385732.1| tRNA modification GTPase trmE [Candidatus Poribacteria sp. WGA-A3]
 gi|283830768|gb|EFC34868.1| tRNA modification GTPase trmE [Candidatus Poribacteria sp. WGA-A3]
          Length = 173

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 26/172 (15%)

Query: 2   NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFG---- 55
           N   +TI A++T      I I+R+SG    +V   + + +         + R +      
Sbjct: 3   NSVDDTICAIATPVGEGGIGIVRVSGAQAIEVAAHVVRPRNRQSLQELENHRLYLSDVLY 62

Query: 56  -------------------LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGIL 96
                                G  +D+ L+++   P S+TGED  E   HGG  ++    
Sbjct: 63  PESPLPPGEGQGEGPSQAVEQGTAIDEALVVIMRKPRSYTGEDVVEIQTHGGAWILQATC 122

Query: 97  EELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSME 148
             L +    RLA+PGEF++RAF NG++DL +AE++ D I + T    + +  
Sbjct: 123 HGLIR-HGARLAHPGEFTKRAFLNGRLDLTQAEAVLDTIQATTSRSLQAAQS 173


>gi|213418886|ref|ZP_03351952.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 186

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 19/187 (10%)

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNI 320
            DTAG+R+ +D VE+ GI+R + E+E AD +L + +  +   +             PKN+
Sbjct: 1   IDTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNL 60

Query: 321 DFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               +  K+D+       S         +S+ TGEG++ L N +K  +      +     
Sbjct: 61  PITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFD-TNMEGGFL 119

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
           + +RHL  L++   +LE            +++AE LRLA  SL +ITG    + LL  IF
Sbjct: 120 ARRRHLQALAEAANHLEQGKAQLLGAWAGELLAEELRLAQQSLSEITGEFTSDDLLGRIF 179

Query: 434 SKFCIGK 440
           S FCIGK
Sbjct: 180 SSFCIGK 186


>gi|325109259|ref|YP_004270327.1| small GTP-binding protein [Planctomyces brasiliensis DSM 5305]
 gi|324969527|gb|ADY60305.1| small GTP-binding protein [Planctomyces brasiliensis DSM 5305]
          Length = 370

 Score =  156 bits (394), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 96/403 (23%), Positives = 157/403 (38%), Gaps = 68/403 (16%)

Query: 9   FAVSTGALPSAISIIRLSGPSC---FQVC---EFICKKKKPFP--RKASLRYFFGLDGRI 60
            AV T     AI+ I++ GP      ++    E   + +       +      FG  G  
Sbjct: 8   AAVLTPPGRGAIATIQIQGPLSDLQARIAFSPERFFQPRNGRQICEQPVDHILFGQWGE- 66

Query: 61  LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120
             + L+         T   S E H HGG A +  ILE+L                  F  
Sbjct: 67  --EELVACR------TSTCSVEIHCHGGPAAIGRILEDLE-----------------FLG 101

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
            KI   E +S++                      S         +   R+F  A+  +S+
Sbjct: 102 AKILPRETDSVSI-------------------GHSRWLSDLETAVVQARTFRAAEFLWSQ 142

Query: 181 EEDVQ-NFSSKEVLNDILFLKNDISSHISQGKL----GEIIRNGYKIVILGHSNAGKSSL 235
              +      +++L +   L  ++ S + +       G+ +   +++VI G  NAGKSSL
Sbjct: 143 RPLLSVWERCEQILRENGPLPTELRSQLIEASRWSLFGQHLTQPWQVVIGGAPNAGKSSL 202

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL   + AIV D PGTTRD +  +  ++G+ V +SDTAG R + + +E  GI+     
Sbjct: 203 INALLGYERAIVYDQPGTTRDAVKAETAIDGWPVMLSDTAGQRASSETIEAAGIEIARTL 262

Query: 296 VENADLILLLKE----INSKKEISFPKNIDFIFIGTKSDLYSTY---TEEYD---HLISS 345
           + +ADL ++L +     +S  E       + + +  K D  +       E+D     +S 
Sbjct: 263 LRSADLAVILIDRSAPSDSDIETLLQAFPNALVVFNKCDQSAHADWTDREFDSTVLEVSC 322

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
               GLEEL+  I   L          IP     L+ L Q++ 
Sbjct: 323 RDQTGLEELLTTITEKLVPALPAADTLIPVTATQLHLLQQSLE 365


>gi|302421192|ref|XP_003008426.1| tRNA modification GTPase GTPBP3 [Verticillium albo-atrum VaMs.102]
 gi|261351572|gb|EEY14000.1| tRNA modification GTPase GTPBP3 [Verticillium albo-atrum VaMs.102]
          Length = 202

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 11/187 (5%)

Query: 31  FQVCEFICK-KKKPFPRKASLRYFFGLDG----RILDK-GLLIVFPSPESFTGEDSAEFH 84
           + +   +C  +  P PR+A++R  +         +LD   L++ F  P + TG+D  E H
Sbjct: 3   WDIYRQLCPSRALPPPRQATVRTLYDPSAPPTANVLDPSALILYFAGPRTVTGDDVLELH 62

Query: 85  VHGGIAVVNGILEELAKMPNL-----RLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
           VHGG A V  +L  + +  +      R A PGEF+RRAF N ++DL + ESL D ++++T
Sbjct: 63  VHGGQATVKAVLAAIPRCASASVAVVRYAEPGEFTRRAFLNDRLDLTQVESLGDTLAADT 122

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E QR  ++ G SG L   Y +W   L   R+ +EA +DFSE++      ++ + N     
Sbjct: 123 EQQRLAAVRGSSGALGRTYEEWRATLLAARAELEALIDFSEDQHFDESPAELLRNVSGAC 182

Query: 200 KNDISSH 206
           + D   H
Sbjct: 183 RRDPRGH 189


>gi|61679426|pdb|1XZP|B Chain B, Structure Of The Gtp-Binding Protein Trme From Thermotoga
           Maritima
          Length = 150

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/119 (39%), Positives = 73/119 (61%), Gaps = 3/119 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDKG 64
           +TI AV+T     AI+I+RLSGP  +++ +   + + K  PRKA   +    +G  +D+ 
Sbjct: 34  DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIH-ENGEDVDEV 92

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           +++ + SP+S+TGED  E   HGG  VV  +L+ L      R+A PGEF++RAF NGK+
Sbjct: 93  VVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLD-LFLKSGARMAEPGEFTKRAFLNGKM 150


>gi|213649049|ref|ZP_03379102.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 174

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 19/174 (10%)

Query: 285 EKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL-- 331
           E+ GI+R + E+E AD +L + +  +   +             PKN+    +  K+D+  
Sbjct: 2   ERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITG 61

Query: 332 ----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
                S         +S+ TGEG++ L N +K  +      +     + +RHL  L++  
Sbjct: 62  ETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAA 120

Query: 388 RYLEMASLNEKDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +LE            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 121 NHLEQGKAQLLGAWAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 174


>gi|61679428|pdb|1XZQ|B Chain B, Structure Of The Gtp-Binding Protein Trme From Thermotoga
           Maritima Complexed With 5-Formyl-Thf
          Length = 149

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/118 (39%), Positives = 72/118 (61%), Gaps = 3/118 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDKG 64
           +TI AV+T     AI+I+RLSGP  +++ +   + + K  PRKA   +    +G  +D+ 
Sbjct: 34  DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIH-ENGEDVDEV 92

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +++ + SP+S+TGED  E   HGG  VV  +L+ L      R+A PGEF++RAF NGK
Sbjct: 93  VVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLD-LFLKSGARMAEPGEFTKRAFLNGK 149


>gi|257892054|ref|ZP_05671707.1| tRNA modification GTPase TrmE [Enterococcus faecium 1,231,410]
 gi|257828414|gb|EEV55040.1| tRNA modification GTPase TrmE [Enterococcus faecium 1,231,410]
          Length = 121

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 7/119 (5%)

Query: 1   MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL--- 56
           +  E +TI A+ST     AISI+RLSG    Q+ + +     K      S    +G    
Sbjct: 4   ITLEFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSHTIHYGHIVD 63

Query: 57  --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113
               +++D+ ++ V  +P++FT ED  E + HGGI VVN IL+ L +    RLA PGEF
Sbjct: 64  PKSNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEF 121


>gi|221042244|dbj|BAH12799.1| unnamed protein product [Homo sapiens]
          Length = 151

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/107 (46%), Positives = 65/107 (60%), Gaps = 2/107 (1%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111
           L++ FP P+SFTGED  EFHVHGG AVV+G+L+ L  +P LR A PG
Sbjct: 95  LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEPG 141


>gi|159162931|pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
           Protein
          Length = 172

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 91/167 (54%), Gaps = 17/167 (10%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G ++R G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL   + ++G  + I 
Sbjct: 1   GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHII 60

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNID 321
           DTAG+RE  D VE+ GI+R + E+E AD +L + +  +   +             P  + 
Sbjct: 61  DTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP 120

Query: 322 FIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
              +  K+D+       S         +S+ TGEG++ L N +K  +
Sbjct: 121 ITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 167


>gi|110590301|pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And Rb+
 gi|110590302|pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And Rb+
 gi|110590303|pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And Rb+
 gi|110590304|pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And Rb+
 gi|110590305|pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And Nh4+
 gi|110590306|pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And Nh4+
          Length = 172

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 60/162 (37%), Positives = 88/162 (54%), Gaps = 17/162 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL   + ++G  + I DTAG+
Sbjct: 3   HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 62

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNIDFIFIG 326
           RE  D VE+ GI+R + E+E AD +L + +  +   +             P  +    + 
Sbjct: 63  REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR 122

Query: 327 TKSDL------YSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
            K+D+       S         +S+ TGEG++ L N +K  +
Sbjct: 123 NKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 164


>gi|167854675|ref|ZP_02477455.1| GTP-binding protein EngA [Haemophilus parasuis 29755]
 gi|167854212|gb|EDS25446.1| GTP-binding protein EngA [Haemophilus parasuis 29755]
          Length = 504

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 107/264 (40%), Gaps = 29/264 (10%)

Query: 145 LSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS 204
           ++     G ++ L  Q +  L         D D +  +D Q+    +   D       + 
Sbjct: 143 IAAAQGRG-VTQLIEQVLAPLAEKLEAQAVDSDENVADDEQDEWDSDFDFDNEEDTALLD 201

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
             + +    E      KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ 
Sbjct: 202 EALEE-DQEEADDKNIKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMER 260

Query: 265 EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP- 317
           +G    I DTAG+R+   +    EK  + +T   +++A+++LL  +     S +++S   
Sbjct: 261 DGQQYTIIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLTIDARDGVSDQDLSLLG 320

Query: 318 ----KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEELINK 357
                    + +  K      D+      E D           H IS+  G G+  L + 
Sbjct: 321 FILNAGKSLVIVVNKWDGLSQDIKDNVKSELDRRLDFIDFARVHFISALHGSGVGNLFSS 380

Query: 358 IKSILSNKFKKLPFSIPSHKRHLY 381
           I+       KK+  S+ +    L 
Sbjct: 381 IQEAYQCATKKMTTSMLTRILQLA 404



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 78/163 (47%), Gaps = 17/163 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ G+   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRNALVADFPGLTRDRKYGHANIAGHDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + VE++  +++ L ++ AD++L L +  +          +    +N   + +  K+D   
Sbjct: 65  EGVEEKMAEQSLLAIKEADVVLFLVDARAGLLPADVGIAQYLRQRNKTTVVVANKTDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFK 367
             +   +            ++  G G+ +LI ++ + L+ K +
Sbjct: 125 ADSHIAEFYQLGLGEVEPIAAAQGRGVTQLIEQVLAPLAEKLE 167


>gi|219870952|ref|YP_002475327.1| GTP-binding protein EngA [Haemophilus parasuis SH0165]
 gi|254783156|sp|B8F4X7|DER_HAEPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|219691156|gb|ACL32379.1| GTP-binding protein EngA [Haemophilus parasuis SH0165]
          Length = 504

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 107/264 (40%), Gaps = 29/264 (10%)

Query: 145 LSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS 204
           ++     G ++ L  Q +  L         D D +  +D Q+    +   D       + 
Sbjct: 143 IAAAQGRG-VTQLIEQVLAPLAEKLEAQAVDSDENVADDEQDEWDSDFDFDNEEDTALLD 201

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
             + +    E      KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ 
Sbjct: 202 EALEE-DQEETDDKNIKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMER 260

Query: 265 EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP- 317
           +G    I DTAG+R+   +    EK  + +T   +++A+++LL  +     S +++S   
Sbjct: 261 DGQQYTIIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLTIDARDGVSDQDLSLLG 320

Query: 318 ----KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEELINK 357
                    + +  K      D+      E D           H IS+  G G+  L + 
Sbjct: 321 FILNAGKSLVIVVNKWDGLSQDIKDNVKSELDRRLDFIDFARVHFISALHGSGVGNLFSS 380

Query: 358 IKSILSNKFKKLPFSIPSHKRHLY 381
           I+       KK+  S+ +    L 
Sbjct: 381 IQEAYQCATKKMTTSMLTRILQLA 404



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 78/163 (47%), Gaps = 17/163 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ G+   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRNALVADFPGLTRDRKYGHANIAGHDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + VE++  +++ L ++ AD++L L +  +          +    +N   + +  K+D   
Sbjct: 65  EGVEEKMAEQSLLAIKEADVVLFLVDARAGLLPADVGIAQYLRQRNKTTVVVANKTDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFK 367
             +   +            ++  G G+ +LI ++ + L+ K +
Sbjct: 125 ADSHIAEFYQLGLGEVEPIAAAQGRGVTQLIEQVLAPLAEKLE 167


>gi|295696375|ref|YP_003589613.1| ribosome-associated GTPase EngA [Bacillus tusciae DSM 2912]
 gi|295411977|gb|ADG06469.1| ribosome-associated GTPase EngA [Bacillus tusciae DSM 2912]
          Length = 451

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 117/318 (36%), Gaps = 48/318 (15%)

Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS------MEGMSGEL--SSLY 158
           LA+      R  + G +D   ++++   I ++ E+    +      ++G+SG        
Sbjct: 52  LASWNGRGFRIIDTGGLDFGGSDAIVKSIRAQVELALEEADAVIFLVDGISGITPADEEI 111

Query: 159 GQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI-----------LFLKNDISSHI 207
              + +           LD       Q    +  L D              L + +   +
Sbjct: 112 AGRLRRAGKPVVLAVNKLDNPNRMIAQYEFFRLGLGDPFPISAEHGLGIGDLLDAVVRRL 171

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
                GE   +  ++ ++G  N GKSSL N L  ++  +V++IPGTTRD +    + EG+
Sbjct: 172 PPEDTGEPDHDAIRVAVIGRPNVGKSSLVNRLLGEERVLVSEIPGTTRDAVDTLFEREGH 231

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISF 316
              + DTAG+R+   +    EK  + R    ++ +D+ LL+ +               + 
Sbjct: 232 SFILIDTAGLRKRGRVWEDTEKYSVLRALRAIDRSDVCLLVIDGKQGIAEQDKRVAGYAV 291

Query: 317 PKNIDFIFIGTKSDLYST-----------YTEEYDHLI-------SSFTGEGLEELINKI 358
                   +  K DL                +E+  +        S+ TG+ +  +++ +
Sbjct: 292 DAGRAVAVVVNKWDLVEKDDKTAVRMTEEIRQEFAFMTWAPVVFVSAKTGQRVGRILDLV 351

Query: 359 KSILSNKFKKLPFSIPSH 376
             I      ++P +  + 
Sbjct: 352 VQIAEQHAMRMPTATVNR 369



 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 18/171 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + I+G  N GKS+LFN +    +AIV D PG TRD L       G   +I DT G+ 
Sbjct: 10  GGLVAIVGRPNVGKSTLFNRIVGGRIAIVEDKPGVTRDRLYALASWNGRGFRIIDTGGLD 69

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKS 329
               D + K    +  L +E AD ++ L +       + +EI+          +    K 
Sbjct: 70  FGGSDAIVKSIRAQVELALEEADAVIFLVDGISGITPADEEIAGRLRRAGKPVVLAVNKL 129

Query: 330 DLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
           D  +    +Y+            S+  G G+ +L++ +   L  +    P 
Sbjct: 130 DNPNRMIAQYEFFRLGLGDPFPISAEHGLGIGDLLDAVVRRLPPEDTGEPD 180


>gi|270717108|ref|ZP_06223233.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
 gi|270315556|gb|EFA27772.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
          Length = 155

 Score =  131 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/135 (40%), Positives = 82/135 (60%)

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +   +  ++  ++  + N +    S+ K G I+R G K+VI G  NAGKSSL NALA ++
Sbjct: 1   IDFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGRE 60

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            AIVTDI GTTRDVL   + ++G  + I DTAG+R+  D VE+ GI R + E+E AD I+
Sbjct: 61  AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRII 120

Query: 304 LLKEINSKKEISFPK 318
           L+ + +  +     K
Sbjct: 121 LMLDSSDPESADLSK 135


>gi|299473466|emb|CBN77863.1| PEngA, plastid EngA GTPase [Ectocarpus siliculosus]
          Length = 680

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 91/219 (41%), Gaps = 30/219 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ++++ H+ +        +   + I+G  N GKSSL N L  +  +IV+D+PGTTRD 
Sbjct: 376 DMMDNVAEHLYEVDENAEEEDNINVAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTRDS 435

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +    +  G   ++ DTAGIR     D   E   + R F  +  AD++LL+ ++ +    
Sbjct: 436 IDAMFERGGRTYRLVDTAGIRRKGKVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITD 495

Query: 312 -----KEISFPKNIDFIFIGTKSDLY-----STYTEEYDH--------------LISSFT 347
                 +         + +  K DL      S+Y +  ++                S+ T
Sbjct: 496 QDRVLADRIQSDGRACVVVCNKWDLVEDKDDSSYNKAVEYARQMLSPVKWAEVCFTSAKT 555

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           G+   +L + +  +     +++  S+ +       L Q 
Sbjct: 556 GQRCTKLFDLVDEVAVQHRRRVKTSVLNEVLRDAVLWQA 594



 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 71/186 (38%), Gaps = 23/186 (12%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK--DVAIVTDIPGTTRDVLTIDLDLEG 266
           +G+     R    + ++G  N GKS++ N LAK+  D +IV D  G TRD         G
Sbjct: 209 KGERARSKRRFPVVAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCG 268

Query: 267 YLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFP 317
               + DT G+    +  D+  KE  ++  + +E A  ++++ +      +  ++   F 
Sbjct: 269 KDFDVVDTGGLVFDDKGGDVFAKEIRQQALIALEEATAVIMVVDGIVGCNVLDQEIARFL 328

Query: 318 KNIDFIFIG--TKSDLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNK 365
           +      +    K +       +               S   G+G+ ++++ +   L   
Sbjct: 329 RQQKVPVVLAVNKCESQKYGEIQTAEFWCLGLGEPWPISGLHGDGIYDMMDNVAEHLYEV 388

Query: 366 FKKLPF 371
            +    
Sbjct: 389 DENAEE 394


>gi|253795566|ref|YP_003038662.1| putative tRNA modification GTPase TrmE [Candidatus Hodgkinia
           cicadicola Dsem]
 gi|253739874|gb|ACT34209.1| putative tRNA modification GTPase TrmE [Candidatus Hodgkinia
           cicadicola Dsem]
          Length = 383

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 152/394 (38%), Gaps = 48/394 (12%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK--- 63
           T+ AV++   P AI I+R++G    +    +  K       A       + G  L+    
Sbjct: 21  TVCAVAS-FTPCAICIVRITGSGTLRALTKLVSKLPKA--GACAVQKLAIAGEALNDMIT 77

Query: 64  -GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
            G++   P+P S TGED AE    G   VV  ++ +L     ++ A  GEF+RRA  N K
Sbjct: 78  TGVVRWQPAPRSPTGEDYAEVSTVGASWVVESVVSKLLSW-GVKKAARGEFTRRALANNK 136

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           + L + + LA   S         +             +    L    +   +    +   
Sbjct: 137 LALADVKQLAGAFSVSVSSVLESA----------KIRRVEQSLAAAAAAARSGFAGTTAP 186

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
                +S+   +                             ++G SNAGKSSLFNAL   
Sbjct: 187 AAARAASQLARSSTTC----------------------SACVIGLSNAGKSSLFNALTHD 224

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             AIV     TTRDV+++    +G  V   DT G+  T D VE + +      V+ A++ 
Sbjct: 225 VKAIVHRGKMTTRDVVSVR---KG-EVVFCDTPGLENTADDVEAKALAAAKRRVDTANVT 280

Query: 303 LLLKEINSKKE-ISFPKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIKS 360
           +++   +     +        +   +K+DL       + D   S++T EG+ +L  K++ 
Sbjct: 281 VVVWAGDKPPSFVRLSSRSAVVTATSKADLVHKLKPSQADVATSAYTLEGVTKLERKLRR 340

Query: 361 ILSN--KFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
           +  +  K ++   +    + +L       R   +
Sbjct: 341 LCRSVIKLRRRASTAQWSQTNLEAACDRARLAAL 374


>gi|110590297|pdb|2GJ8|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And K+
 gi|110590298|pdb|2GJ8|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And K+
 gi|110590299|pdb|2GJ8|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And K+
 gi|110590300|pdb|2GJ8|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
           Mg2+ And K+
          Length = 172

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 17/160 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL   + ++G  + I DTAG+
Sbjct: 3   HGXKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGL 62

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNIDFIFIG 326
           RE  D VE+ GI+R + E+E AD +L   +  +   +             P  +    + 
Sbjct: 63  REASDEVERIGIERAWQEIEQADRVLFXVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR 122

Query: 327 TKSDL------YSTYTEEYDHLISSFTGEGLEELINKIKS 360
            K+D+       S         +S+ TGEG++ L N +K 
Sbjct: 123 NKADITGETLGXSEVNGHALIRLSARTGEGVDVLRNHLKQ 162


>gi|52424789|ref|YP_087926.1| GTP-binding protein EngA [Mannheimia succiniciproducens MBEL55E]
 gi|52306841|gb|AAU37341.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 507

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 110/266 (41%), Gaps = 28/266 (10%)

Query: 143 RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND 202
            +++     G ++ L    +  L       E+ ++  E  + +    +   +       +
Sbjct: 143 AQIAASQGRG-VTQLMEDVLAPLAEKMKTDESAVENDENSEQEKDEWEHEFDFNSEEDAE 201

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           +       +  E      KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I +
Sbjct: 202 LLDEALAEENEEPENKNIKIAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSVYIPM 261

Query: 263 DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISF 316
           + +G    I DTAG+R+   +    EK  + +T   +++A+++LL  +     S +++S 
Sbjct: 262 ERDGQQYTIIDTAGVRKRGKVHLSVEKFSVIKTLQAIQDANVVLLTVDAREGISDQDLSL 321

Query: 317 P-----KNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGEGLEELI 355
                      + +  K D  S YT++                  H IS+  G G+  L 
Sbjct: 322 LGFILNAGRSLVIVVNKWDGLSQYTKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLF 381

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLY 381
           + ++   +   KK+  S+ +    + 
Sbjct: 382 DSVQEAYACATKKMTTSMLTRLLQMA 407



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 14/142 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANISGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---------KKEISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L +E AD++L L +  +          + +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLTPADIGIAQYLRQRQNKITVVVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEEL 354
                + D   + F   GL E+
Sbjct: 124 ---GIDADSHCAEFYQLGLGEI 142


>gi|33152292|ref|NP_873645.1| GTP-binding protein EngA [Haemophilus ducreyi 35000HP]
 gi|41017016|sp|Q7VM29|DER_HAEDU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|33148515|gb|AAP96034.1| conserved putative GTP-binding protein [Haemophilus ducreyi
           35000HP]
          Length = 510

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 113/271 (41%), Gaps = 33/271 (12%)

Query: 143 RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND 202
            +++     G ++ L  Q +  L    +  +AD +  E    +     E   D  F   +
Sbjct: 141 AKIAAAQGRG-VTQLIEQVLSPLATALNSEQADEN-EENLATETNEFDEWNQDFDFNNEE 198

Query: 203 ISSHISQGKLGE----IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
            ++ + +    E    I     KI I+G  N GKS+L N +  ++  +V D+PGTTRD +
Sbjct: 199 DTALLDEALDEENSESIADKNIKIAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSI 258

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKK 312
            I ++ +G    I DTAG+R+   I    EK  + +T   +++A+++LL  +     S +
Sbjct: 259 YIPMERDGQEYTIIDTAGVRKRGKINLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQ 318

Query: 313 EISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGL 351
           ++S            + +  K      D+      E D           H IS+  G G+
Sbjct: 319 DLSLLGFILNAGRSLVIVVNKWDGLSYDIKEQVKSELDRRLDFIDFARVHFISALHGSGV 378

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
             L + +K   +   +K   S+ +   H+  
Sbjct: 379 GNLFDSVKEAYACATQKTSTSMLTRILHMAA 409



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 17/156 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ G+   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGHDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLYS 333
           + +E++  +++ L +E AD++L L +  +     +I        +    + +  K+D   
Sbjct: 65  EGIEEKMAEQSLLAIEEADVVLFLVDARAGLLPADIGIAQYLRQREKTTVVVANKTDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKS 360
             +   +            ++  G G+ +LI ++ S
Sbjct: 125 ADSHCGEFYQLGLGEVAKIAAAQGRGVTQLIEQVLS 160


>gi|156973384|ref|YP_001444291.1| GTP-binding protein EngA [Vibrio harveyi ATCC BAA-1116]
 gi|166225933|sp|A7MZE5|DER_VIBHB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|156524978|gb|ABU70064.1| hypothetical protein VIBHAR_01071 [Vibrio harveyi ATCC BAA-1116]
          Length = 498

 Score =  129 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 28/239 (11%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L    +    DL  SE ED +     E  ++ L +  D +   ++ +   +     K+ I
Sbjct: 156 LERALAPFFDDLLASESEDGEIEDLTEFEDEELAV-EDYTEEDAEAEFKRLQDQPIKLAI 214

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R    I 
Sbjct: 215 IGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRIN 274

Query: 285 ---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD--- 330
              EK  + +T   VE+A+++LL+ +     S +++S            +    K D   
Sbjct: 275 ETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWDGLD 334

Query: 331 --LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             +     +E D           H IS+  G G+  L   I+    +   ++  S+ + 
Sbjct: 335 NEVKENVKKELDRRLGFVDFARIHFISALHGTGVGHLFESIQEAYKSATTRVGTSVLTR 393



 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       L E +   + DT GI  T
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLY 332
           ++ VE +  +++   ++ AD++L L +  +     + +   +        + +  K D  
Sbjct: 65  EEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPSDEAIAAHLRKIEKPAMLVVNKIDGI 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D            ++  G G+  L+ +  +   +       
Sbjct: 125 DADAACADFWQLGVDDMYQIAAAHGRGVTALLERALAPFFDDLLASES 172


>gi|325116750|emb|CBZ52303.1| tRNA modification GTPase TrmE, related [Neospora caninum Liverpool]
          Length = 852

 Score =  129 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 66/195 (33%), Positives = 108/195 (55%), Gaps = 10/195 (5%)

Query: 105 LRLANPGEFSRRAFENGKIDLLE-AESLADLISSETEMQRRLSMEGMSG---ELSSLYGQ 160
           LRLA  GEF+ RA+ NGKI+ ++  E+LADL++++T  Q RL++  +     E+ +L   
Sbjct: 225 LRLAEAGEFTFRAYLNGKIETVQQVEALADLVNADTVAQHRLAVRRLRRQPREVHALLDN 284

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL------NDILFLKNDISSHISQGKLGE 214
           W   L    +F EA L+  ++    +  + +          +  L  +I  H+  G    
Sbjct: 285 WRGLLQEALAFSEAALEIGDDAQEADAEAAQEAGATKAEARVRRLLREIRLHLELGLREA 344

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++ +G K+V  G +NAGKS+LFN+L  +D AIV+ + GTTRDVLT  + L G  + ++DT
Sbjct: 345 LVHSGVKVVFCGPTNAGKSTLFNSLVGRDAAIVSPLAGTTRDVLTWPVQLRGAKLLLTDT 404

Query: 275 AGIRETDDIVEKEGI 289
           AG+R       ++  
Sbjct: 405 AGLRPAPRGSGEQRR 419



 Score = 37.2 bits (85), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 25/96 (26%)

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF----------------- 316
           T G+    D VE+EG+ RT    + AD+++ L E  S +E +                  
Sbjct: 489 TDGLDLAVDCVEREGMARTVRTAQEADILIFLLECRSTREATLEHARRFLRIFRDSFAGR 548

Query: 317 --------PKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
                   P+    + +  K+D+Y+      D ++S
Sbjct: 549 WEDGGGATPRERRVVVVLNKADVYAPLLVNQDEVVS 584


>gi|322514868|ref|ZP_08067886.1| ribosome-associated GTPase EngA [Actinobacillus ureae ATCC 25976]
 gi|322119172|gb|EFX91317.1| ribosome-associated GTPase EngA [Actinobacillus ureae ATCC 25976]
          Length = 505

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 112/263 (42%), Gaps = 34/263 (12%)

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
           +++     G ++ L  Q +  L      + AD     EED  N  + E   D  F   + 
Sbjct: 142 QIAAAQGRG-VTQLIEQVLATLGE---QLNADQAVENEEDSANEEADEWDTDFDFDNEED 197

Query: 204 SSHISQGKLGE---IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           ++ + +    E   I     KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I
Sbjct: 198 TALLDEALEDESESIEDKNIKIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYI 257

Query: 261 DLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEI 314
            ++ +G    I DTAG+R+   +    EK  + +T   +++A+++LL  +     S +++
Sbjct: 258 PMERDGQQYTIIDTAGVRKRGKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDL 317

Query: 315 SFP-----KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEE 353
           S            + +  K      D+      E D           H IS+  G G+  
Sbjct: 318 SLLGFILNAGRSLVIVVNKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGN 377

Query: 354 LINKIKSILSNKFKKLPFSIPSH 376
           L + +K   +   +K   S+ + 
Sbjct: 378 LFDSVKEAYACATQKTSTSMLTR 400



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 14/186 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLYS 333
           + VE++  +++ L +E AD++L L +  +     +I        +    + +  K+D   
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADIGIAQYLRQREKTTVVVANKTD--- 121

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
               + D   + F   GL E + +I +       +L   + +      +  Q V   E +
Sbjct: 122 --GIDADSHCAEFYQLGLGE-VEQIAAAQGRGVTQLIEQVLATLGEQLNADQAVENEEDS 178

Query: 394 SLNEKD 399
           +  E D
Sbjct: 179 ANEEAD 184


>gi|257465498|ref|ZP_05629869.1| GTP-binding protein EngA [Actinobacillus minor 202]
 gi|257451158|gb|EEV25201.1| GTP-binding protein EngA [Actinobacillus minor 202]
          Length = 510

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 33/265 (12%)

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN--FSSKEVLNDILFLKN 201
           +++     G ++ L  Q +  L       +A  +  E  D +    +  E   D  F   
Sbjct: 142 QIAAAQGRG-VTQLIEQVLAPLAEELGGSQAVENEEELADHEENETTQDEWDRDFDFENE 200

Query: 202 DISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           + ++ + +    +   +     KI I+G  N GKS+L N +  ++  +V D+PGTTRD +
Sbjct: 201 EDAALLDEALEEENAAVEDKNIKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSI 260

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKK 312
            I ++ +G    I DTAG+R+   +    EK  + +T   +++A+++LL  +     S +
Sbjct: 261 YIPMERDGQHYTIIDTAGVRKRGKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQ 320

Query: 313 EISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGL 351
           ++S            + +  K      D+      E D           H IS+  G G+
Sbjct: 321 DLSLLGFILNAGRSLVIVVNKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGV 380

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
             L   +K   +   +K   S+ + 
Sbjct: 381 GNLFESVKEAYACATQKTSTSMLTR 405



 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 14/186 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIGGYDFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + VE++  +++ L +E AD++L L +  +          +    +    + +  K+D   
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADVGIAQYLRQREKTTVVVANKTD--- 121

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
               + D   + F   GL E + +I +       +L   + +        SQ V   E  
Sbjct: 122 --GIDADSHCAEFYQLGLGE-VEQIAAAQGRGVTQLIEQVLAPLAEELGGSQAVENEEEL 178

Query: 394 SLNEKD 399
           + +E++
Sbjct: 179 ADHEEN 184


>gi|293391945|ref|ZP_06636279.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952479|gb|EFE02598.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 510

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/269 (21%), Positives = 111/269 (41%), Gaps = 31/269 (11%)

Query: 143 RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD-FSEEEDVQNFSSKEVLNDILFLKN 201
            +++     G + SL  Q +  L    +   A  +      DV      E   D  F   
Sbjct: 143 AQIAASQGRG-VVSLMEQVLSPLAEQMTEESAVENPDVSSNDVDTAEFDEWDEDFDFSNE 201

Query: 202 DISSHISQ--GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           + ++ + +   +     +   KI I+G  N GKS+L N +  +D  +V D+PGTTRD + 
Sbjct: 202 EDTALLDEELAQEQTPDKKNIKIAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIY 261

Query: 260 IDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKE 313
           I ++ +     + DTAG+R+   +    EK  + +T   +++A+++LL+ +     S ++
Sbjct: 262 IPMERDNQNYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLVIDARENISDQD 321

Query: 314 ISFP-----KNIDFIFIGTKSD-----LYSTYTEEYD-----------HLISSFTGEGLE 352
           +S            + +  K D     + +    E D           H IS+  G G+ 
Sbjct: 322 LSLLGFILNAGRSLVIVVNKWDGLDTEVKNRVKSELDRRLDFIDFARVHFISALHGSGVG 381

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            L + IK       +K+  S+ +    + 
Sbjct: 382 NLFDSIKEAYECATQKMTTSMLTRILQIA 410



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 14/142 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L G+   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHLAGHDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L +E AD++L L +  +            +   +N   + +  K D  
Sbjct: 66  EGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADIGIANYLRQRQNKTTVVVANKVD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEEL 354
                + D   + F   GL ++
Sbjct: 124 ---GIDADSHCAEFYQLGLGDI 142


>gi|54401991|gb|AAV34670.1| ThdF [Escherichia coli]
          Length = 158

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 19/159 (11%)

Query: 300 DLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL------YSTYTEEYDHL 342
           D +L + +  +   +             P  +    +  K+D+       S         
Sbjct: 1   DRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIR 60

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-G 401
           +S+ TGEG++ L N +K  +      +     + +RHL  L Q   +L+           
Sbjct: 61  LSARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWA 119

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 120 GELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 158


>gi|91225135|ref|ZP_01260357.1| GTP-binding protein EngA [Vibrio alginolyticus 12G01]
 gi|269965174|ref|ZP_06179308.1| GTP-binding protein [Vibrio alginolyticus 40B]
 gi|91190078|gb|EAS76349.1| GTP-binding protein EngA [Vibrio alginolyticus 12G01]
 gi|269830160|gb|EEZ84387.1| GTP-binding protein [Vibrio alginolyticus 40B]
          Length = 498

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 103/239 (43%), Gaps = 28/239 (11%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L    S    DL  SE ED +         D   L  D +   ++ +   +     K+ I
Sbjct: 156 LERALSPFFDDLLTSESEDGEIEDLTGF-EDEEPLVEDYTEEDAEAEFKRLQEQPIKLAI 214

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R    I 
Sbjct: 215 IGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRIN 274

Query: 285 ---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK----- 328
              EK  + +T   VE+A+++LL+ +     S +++S            +    K     
Sbjct: 275 ETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVIAVNKWDGLD 334

Query: 329 SDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           SD+  +  +E D           H IS+  G G+  L   I+   ++   ++  S+ + 
Sbjct: 335 SDVKESVKKELDRRLGFVDFARIHFISALHGTGVGHLFESIQEAYNSATTRVGTSVLTR 393



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       L E +   + DT GI  T
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLY 332
           ++ VE +  +++   ++ AD++L L +  +     + +   +        + +  K D  
Sbjct: 65  EEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPSDEAIAAHLRKIEKPAMLVVNKIDGI 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D            ++  G G+  L+ +  S   +       
Sbjct: 125 DADAACADFWQLGVDDMYQIAAAHGRGVTALLERALSPFFDDLLTSES 172


>gi|170718421|ref|YP_001783641.1| GTP-binding protein EngA [Haemophilus somnus 2336]
 gi|168826550|gb|ACA31921.1| small GTP-binding protein [Haemophilus somnus 2336]
          Length = 511

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 113/268 (42%), Gaps = 31/268 (11%)

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
           +++     G +S+L  + +  +    S   A+       +  + S++E   D  F   + 
Sbjct: 144 KIAASQGRG-ISALMEKVLPPVADKLSLANAEEHSESAVENSDESAEEWEKDFNFNSEED 202

Query: 204 SSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
              + +    +  E      KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I
Sbjct: 203 IQLLDEALVEEQEESEDKNIKIAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYI 262

Query: 261 DLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEI 314
            ++ +G    + DTAG+R+   +    EK  + +T   +++A++ILL  +     S +++
Sbjct: 263 PMERDGQQYTLIDTAGVRKRGKVHLTVEKFSVIKTLQAIQDANVILLTIDARQGISDQDL 322

Query: 315 SFP-----KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEE 353
           S            + +  K      D+      E D           H IS+  G G+  
Sbjct: 323 SLLGFILNTGRSLVIVVNKWDGLNQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGN 382

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLY 381
           L + IK   +   KK+  S+ +    + 
Sbjct: 383 LFDSIKEAYACATKKMTTSLLTRILQMA 410



 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD         GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAHFNGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---------KKEISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L +E AD++L L +  +          + +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADVGIAQYLRKRQNKTTVLVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
                + D   + F   GL E I KI +        L   +         L+    + E 
Sbjct: 124 ---GIDADSHCAEFYQLGLGE-IEKIAASQGRGISALMEKVLPPVADKLSLANAEEHSES 179

Query: 393 ASLNEKDCGLD 403
           A  N  +   +
Sbjct: 180 AVENSDESAEE 190


>gi|269962406|ref|ZP_06176756.1| GTP-binding protein [Vibrio harveyi 1DA3]
 gi|269832902|gb|EEZ87011.1| GTP-binding protein [Vibrio harveyi 1DA3]
          Length = 498

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 103/239 (43%), Gaps = 28/239 (11%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L    +    DL  SE E+ +     E  ++ L +  D +   ++ +   +     K+ I
Sbjct: 156 LERALAPFFDDLLASESEEGEIEDLTEFEDEELAV-EDYTEEDAEAEFKRLQDQPIKLAI 214

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R    I 
Sbjct: 215 IGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRIN 274

Query: 285 ---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKS---- 329
              EK  + +T   VE+A+++LL+ +     S +++S            +    K     
Sbjct: 275 ETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWDGLD 334

Query: 330 -DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            D+     +E D           H IS+  G G+  L   I+    +   ++  S+ + 
Sbjct: 335 NDVKENVKKELDRRLGFVDFARIHFISALHGTGVGHLFESIQEAYKSATTRVGTSVLTR 393



 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       L E +   + DT GI  T
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLY 332
           ++ VE +  +++   ++ AD++L L +  +     + +   +        + +  K D  
Sbjct: 65  EEGVETKMAQQSLAAIDEADVVLFLVDGRAGLTPSDEAIAAHLRKIEKPAMLVVNKIDGI 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D            ++  G G+  L+ +  +   +       
Sbjct: 125 DADAACADFWQLGVDDMYQIAAAHGRGVTALLERALAPFFDDLLASES 172


>gi|240949663|ref|ZP_04753998.1| GTP-binding protein EngA [Actinobacillus minor NM305]
 gi|240295921|gb|EER46597.1| GTP-binding protein EngA [Actinobacillus minor NM305]
          Length = 510

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 109/265 (41%), Gaps = 33/265 (12%)

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN--FSSKEVLNDILFLKN 201
           +++     G ++ L  Q +  L       +A  +  E  D +    +  E   D  F   
Sbjct: 142 QIAAAQGRG-VTQLIEQVLAPLAEELGGSQAVENEDEFADHEENETTQDEWDRDFDFENE 200

Query: 202 DISSHISQGKLGE---IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           + ++ + +    E   I     KI I+G  N GKS+L N +  ++  +V D+PGTTRD +
Sbjct: 201 EDAALLDEALEEENTSIEDKNIKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSI 260

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKK 312
            I ++ +G    I DTAG+R    +    EK  + +T   +++A+++LL  +     S +
Sbjct: 261 YIPMERDGQHYTIIDTAGVRRRGKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQ 320

Query: 313 EISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGL 351
           ++S            + +  K      D+      E D           H IS+  G G+
Sbjct: 321 DLSLLGFILNAGRSLVIVVNKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGV 380

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
             L   +K   +   +K   S+ + 
Sbjct: 381 GNLFESVKEAYACATQKTSTSMLTR 405



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 17/163 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIGGYDFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + VE++  +++ L +E AD++L L +  +          +    +    + +  K+D   
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGIAQYLRQREKTTVVVANKTDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFK 367
             +   +            ++  G G+ +LI ++ + L+ +  
Sbjct: 125 ADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLAPLAEELG 167


>gi|153833535|ref|ZP_01986202.1| GTP-binding protein EngA [Vibrio harveyi HY01]
 gi|148870186|gb|EDL69127.1| GTP-binding protein EngA [Vibrio harveyi HY01]
          Length = 498

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 103/239 (43%), Gaps = 28/239 (11%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L    +    DL  SE E+ +     E  ++ L +  D +   ++ +   +     K+ I
Sbjct: 156 LERALAPFFDDLLASESEEGEIEDLTEFEDEELTV-EDYTEEDAEAEFKRLQDQPIKLAI 214

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R    I 
Sbjct: 215 IGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRIN 274

Query: 285 ---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD--- 330
              EK  + +T   VE+A+++LL+ +     S +++S            +    K D   
Sbjct: 275 ETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWDGLD 334

Query: 331 --LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             +     +E D           H IS+  G G+  L   I+    +   ++  S+ + 
Sbjct: 335 NEVKENVKKELDRRLGFVDFARIHFISALHGTGVGHLFESIQEAYKSATTRVGTSVLTR 393



 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       L E +   + DT GI  T
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLY 332
           ++ VE +  +++   ++ AD++L L +  +     + +   +        + +  K D  
Sbjct: 65  EEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPSDEAIAAHLRKIEKPAMLVVNKIDGI 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D            ++  G G+  L+ +  +   +       
Sbjct: 125 DADAACADFWQLGVDDMYQIAAAHGRGVTALLERALAPFFDDLLASES 172


>gi|306820449|ref|ZP_07454085.1| ribosome-associated GTPase EngA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551524|gb|EFM39479.1| ribosome-associated GTPase EngA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 439

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++     + +L     +  K+ I+G  NAGKSS+ NA+  ++  IV+ I GTTRD 
Sbjct: 154 DLLDEVVGLFPKDELEIEEDDSIKVAIVGRPNAGKSSILNAIIGEERTIVSPIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINS---- 310
           +    +++G      DTAGIR+ +   D +EK  + R++  +E  D++L++ +       
Sbjct: 214 IDEKCEIDGKSYTFIDTAGIRKKNKIFDNIEKYSVLRSYTAIERCDVVLMVIDATEMVSE 273

Query: 311 ----KKEISFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
                  ++       I +  K DL    T                        +S+ TG
Sbjct: 274 QDTKIAGLAHEAGKPVIIVINKWDLIDKSTNTMRDYTADVRNALAYMQYAKIEFVSAMTG 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L  +I +I  +L    K+L   + +
Sbjct: 334 KRLNNIITQIDYVLEQSKKRLSTGVLN 360



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 75/169 (44%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L  + ++IV D PG TRD +  D++   Y   + DT GI  +T
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGEKISIVEDTPGVTRDRIFADVNWLTYTFTLIDTGGIETDT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLY 332
           ++++     K+  + ++ +D+I+ + +  +           +        I +  K D  
Sbjct: 65  EEMIPAMMRKQAQVAIDMSDVIMFVLDGKNGLHPQDFEVGTMLRKSKKPVILVVNKVDGS 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
               + YD            S+  G G+ +L++++  +      ++   
Sbjct: 125 KLPDDYYDFYQLGFDDMYAVSASQGLGIGDLLDEVVGLFPKDELEIEED 173


>gi|261867584|ref|YP_003255506.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412916|gb|ACX82287.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 510

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 110/269 (40%), Gaps = 31/269 (11%)

Query: 143 RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD-FSEEEDVQNFSSKEVLNDILFLKN 201
            +++     G + SL  Q +  L    +   A  +      D       E   D  F   
Sbjct: 143 AQIAASQGRG-VVSLMEQVLSPLAEQMTEESAVENPDVSSNDADTAEFDEWDEDFDFSNE 201

Query: 202 DISSHISQ--GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           + ++ + +   +     +   KI I+G  N GKS+L N +  +D  +V D+PGTTRD + 
Sbjct: 202 EDTALLDEELAQEQTPDKKNIKIAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIY 261

Query: 260 IDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKE 313
           I ++ +     + DTAG+R+   +    EK  + +T   +++A+++LL+ +     S ++
Sbjct: 262 IPMERDNQDYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLVIDARENISDQD 321

Query: 314 ISFP-----KNIDFIFIGTKSD-----LYSTYTEEYD-----------HLISSFTGEGLE 352
           +S            + +  K D     + +    E D           H IS+  G G+ 
Sbjct: 322 LSLLGFILNAGRSLVIVVNKWDGLDTEVKNRVKSELDRRLDFIDFARVHFISALHGSGVG 381

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            L + IK       +K+  S+ +    + 
Sbjct: 382 NLFDSIKEAYECATQKMTTSMLTRILQIA 410



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 14/142 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L G+   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHLAGHDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L +E AD++L L +  +            +   +N   + +  K D  
Sbjct: 66  EGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADIGIANYLRQRQNKTTVVVANKVD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEEL 354
                + D   + F   GL ++
Sbjct: 124 ---GIDADSHCAEFYQLGLGDV 142


>gi|296133088|ref|YP_003640335.1| ribosome-associated GTPase EngA [Thermincola sp. JR]
 gi|296031666|gb|ADG82434.1| ribosome-associated GTPase EngA [Thermincola potens JR]
          Length = 440

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 98/239 (41%), Gaps = 32/239 (13%)

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
            +  ++ + EAE +  ++ + +         G++     +     +    +        D
Sbjct: 75  LQQARLAIEEAEVILFVVDARS---------GLTATDEEVARMLRNTKKPVILVANKVED 125

Query: 178 FSEEEDVQNFSSKEVLNDIL-----------FLKNDISSHISQGKLGEIIRNGYKIVILG 226
           F+   DV +F  +  L D +            L +++  H+ +    E   +  KI ++G
Sbjct: 126 FTGNMDVYDF-YRLGLGDPIMVSASHGLNVGDLLDEVVKHLPEYAAEEYGDDVIKIAVIG 184

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDI 283
             N GKSS+ NAL  ++  IV+D+ GTTRD +    +  G    + DTAG+R+    D+ 
Sbjct: 185 RPNVGKSSIVNALLGEERVIVSDVAGTTRDAIDTYFERGGQRYLLIDTAGMRKKGKIDEP 244

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST 334
            E+  + R+   V+ +D++L++ +               +       + +  K DL   
Sbjct: 245 TERYSVLRSLKAVDRSDVVLMIIDAQEVVTEQDKKIAGYAHEAGKAMVLVVNKWDLIKK 303



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 19/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A   +AIV D PG TRD +  D         + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGSRIAIVEDKPGVTRDRIYKDAVWLDKEFTLVDTGGIEFRD 65

Query: 282 DI--VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDL 331
           D   +    +++  L +E A++IL + +  S    +  +            I +  K + 
Sbjct: 66  DKGSMSDLILQQARLAIEEAEVILFVVDARSGLTATDEEVARMLRNTKKPVILVANKVED 125

Query: 332 YSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKL 369
           ++   + YD          ++S+  G  + +L++++   L     + 
Sbjct: 126 FTGNMDVYDFYRLGLGDPIMVSASHGLNVGDLLDEVVKHLPEYAAEE 172


>gi|163802477|ref|ZP_02196370.1| GTP-binding protein EngA [Vibrio sp. AND4]
 gi|159173778|gb|EDP58593.1| GTP-binding protein EngA [Vibrio sp. AND4]
          Length = 498

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 28/239 (11%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L    +    DL  SE E+ +        ++ L +  D +   ++ +   +     K+ I
Sbjct: 156 LERALAPFFDDLLASESEEGEIEDLTGFEDEELAI-EDYTEEDAEAEFKRLQDQPIKLAI 214

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R    I 
Sbjct: 215 IGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRIN 274

Query: 285 ---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD--- 330
              EK  + +T   VE+A+++LL+ +     S +++S            +    K D   
Sbjct: 275 ETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWDGLD 334

Query: 331 --LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             +     +E D           H IS+  G G+  L   I+    +   ++  S+ + 
Sbjct: 335 NEVKENVKKELDRRLGFVDFARIHFISALHGTGVGHLFESIQEAYKSATTRVGTSVLTR 393



 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       L E +   + DT GI  T
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQASLGEEHEFIVIDTGGIDGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLY 332
           ++ VE +  +++   ++ AD++L L +  +     + +   +        + +  K D  
Sbjct: 65  EEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPSDEAIAAHLRKIEKPAMLVVNKIDGI 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D            ++  G G+  L+ +  +   +       
Sbjct: 125 DADAACADFWQLGVDDMYHIAAAHGRGVTALLERALAPFFDDLLASES 172


>gi|260776629|ref|ZP_05885524.1| GTP-binding protein EngA [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607852|gb|EEX34117.1| GTP-binding protein EngA [Vibrio coralliilyticus ATCC BAA-450]
          Length = 495

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 119/284 (41%), Gaps = 39/284 (13%)

Query: 121 GKIDLLEAESL-ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            K+D ++A++  AD      E   +++     G      G  ID+  +  +   A+    
Sbjct: 118 NKVDGIDADAASADFWQLGVESMYQIAAAHGRG-----VGALIDRALNPFAEKMAEEARG 172

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED+ +F  ++        +       ++ +   +     K+ I+G  N GKS+L N +
Sbjct: 173 EIEDLTDFIDEDEEKLDYTEEE------AEAEFKRLQDQPIKLAIIGRPNVGKSTLTNRI 226

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  +V D+PGTTRD + I ++ +G    + DTAG+R    I    EK  + +T   V
Sbjct: 227 LGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRKRINETVEKFSVVKTLKAV 286

Query: 297 ENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD--- 340
           E+A+++LL+ +     S +++S            +    K      D+     +E D   
Sbjct: 287 EDANVVLLVIDARENISDQDLSLLGFALNAGRSIVIAVNKWDGLDMDVKEHVKKELDRRL 346

Query: 341 --------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                   H IS+  G G+  L   ++    +   ++  S+ + 
Sbjct: 347 GFVDFARIHFISALHGTGVGHLFESVQEAYKSATTRVGTSVLTR 390



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 22/208 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +     +I+   +        + +  K D   
Sbjct: 65  EGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDIAISNHLRKIEKPSMLVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINK-----IKSILSNKFKKLPFSIPSHKRH 379
                 D            ++  G G+  LI++      + +      ++          
Sbjct: 125 ADAASADFWQLGVESMYQIAAAHGRGVGALIDRALNPFAEKMAEEARGEIEDLTDFIDED 184

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAE 407
              L  T    E      +D  + +   
Sbjct: 185 EEKLDYTEEEAEAEFKRLQDQPIKLAII 212


>gi|312143875|ref|YP_003995321.1| ribosome-associated GTPase EngA [Halanaerobium sp. 'sapolanicus']
 gi|311904526|gb|ADQ14967.1| ribosome-associated GTPase EngA [Halanaerobium sp. 'sapolanicus']
          Length = 438

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 125/318 (39%), Gaps = 49/318 (15%)

Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS---------MEGMSGELSSL 157
            A   + +    + G I   +++ + + I  + E+    +           GM+G    +
Sbjct: 45  EAEWLDRTFNVIDTGGIVPRDSDEIKNKIKYQAELAMEEADVILFVVDSRTGMTGIDQEI 104

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDV-----------QNFSSKEVLNDILFLKNDISSH 206
                     +   +    DFS ++++               S E   +   L   IS+ 
Sbjct: 105 AQLLYRTNKEVLLVVNKVEDFSNQQEISWEFYSLGFGDPILISAEHGKNTGELLEKISAE 164

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           + + +  E  R    I ++G  N GKSSL N L  ++  IV+D+PGTTRD +   ++ + 
Sbjct: 165 LPEYEEDEDKREAINIAVIGKPNVGKSSLINHLVGENRVIVSDMPGTTRDAVDTLIEWKD 224

Query: 267 YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEI-----NSKKEI---S 315
                 DTAG+R    +   +E     R    V+ +D +L++ +      +  K+I   +
Sbjct: 225 IKFNFIDTAGLRRKSRVKESIEYYSNLRALKSVDRSDAVLMMIDATKGVSDQDKKIAGYA 284

Query: 316 FPKNIDFIFIGTKSDLYST-------YTEEYDH-----------LISSFTGEGLEELINK 357
             +    +    K DL          YT+E  +            IS+ TGE ++E+++ 
Sbjct: 285 HDEGKAMVIAINKWDLMKKDSKTMKRYTDEVYYELKFLNYVPITYISALTGERIDEMLSL 344

Query: 358 IKSILSNKFKKLPFSIPS 375
           ++ ++     ++   + +
Sbjct: 345 LEYVVDQSNLRIKTGVLN 362



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 19/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L     AIV   P  TRD +  + +       + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGGRRAIVEGEPNVTRDRIYGEAEWLDRTFNVIDTGGIVPRD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
               K  IK +  L +E AD+IL + +  +          ++ +  N + + +  K + +
Sbjct: 66  SDEIKNKIKYQAELAMEEADVILFVVDSRTGMTGIDQEIAQLLYRTNKEVLLVVNKVEDF 125

Query: 333 STYTE----------EYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
           S   E              LIS+  G+   EL+ KI + L    +   
Sbjct: 126 SNQQEISWEFYSLGFGDPILISAEHGKNTGELLEKISAELPEYEEDED 173


>gi|330446667|ref|ZP_08310319.1| small GTP-binding domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490858|dbj|GAA04816.1| small GTP-binding domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 500

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 116/277 (41%), Gaps = 35/277 (12%)

Query: 133 DLISSETEMQRRL-----SMEGMSGELSSLYGQWIDK-LTHIRSFIEADLDFSEEEDVQN 186
           D I +++           +M  ++   +      +++ L      + A+L  +E  + Q 
Sbjct: 121 DGIDADSACAEFWRLGVDAMYQIAATQNRGVTALMERALAPFSDKLNAEL--AENGEEQE 178

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S +++ +     K ++S   ++     +     K+ I+G  N GKS+L N +  ++  +
Sbjct: 179 VSIEDLTSVEDIEKANLSEADAEAAYKRLQEQPIKLAIIGRPNVGKSTLTNRILGEERVV 238

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           V D+PGTTRD + I ++ +G    + DTAGIR   ++    EK  + +T   VE+A+++L
Sbjct: 239 VYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRRKNMHQAVEKFSVIQTLKAVEDANVVL 298

Query: 304 LLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEE----------------Y 339
           L+ +     S +++S            +    K D      +E                 
Sbjct: 299 LVIDARENISDQDLSLLGFALNAGRSLVIAVNKWDGLDNEVKERVKSELDRRLGFVDFAR 358

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            H IS+  G G+  L   +     +  K++  S+ + 
Sbjct: 359 IHFISALHGTGVGHLYESVIEAYQSATKRISTSLLTR 395



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 8/129 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      +LE +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYS 333
           + VE +  +++   +E AD++L L +  +    +          ++     +  K D   
Sbjct: 65  EGVETKMAEQSLAAIEEADVVLFLVDGRAGLTAADEAIAKHLRSRDKPTFLVVNKVDGID 124

Query: 334 TYTEEYDHL 342
             +   +  
Sbjct: 125 ADSACAEFW 133


>gi|113461468|ref|YP_719537.1| GTP-binding protein EngA [Haemophilus somnus 129PT]
 gi|112823511|gb|ABI25600.1| GTP-binding protein [Haemophilus somnus 129PT]
          Length = 511

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 113/268 (42%), Gaps = 31/268 (11%)

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
           +++     G +S+L  + +  +    S   A+       +  + S++E   D  F   + 
Sbjct: 144 KIAASQGRG-ISALMEKVLPSVADKLSLANAEDHSESAVENSDESAEEWEKDFNFNSEED 202

Query: 204 SSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
              + +    +  E      KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I
Sbjct: 203 IQLLDEALVEEQEESEDKNIKIAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYI 262

Query: 261 DLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEI 314
            ++ +G    + DTAG+R+   +    EK  + +T   +++A++ILL  +     S +++
Sbjct: 263 PMERDGQQYTLIDTAGVRKRGKVHLTVEKFSVIKTLQAIQDANVILLTIDARQGISDQDL 322

Query: 315 SFP-----KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEE 353
           S            + +  K      D+      E D           H IS+  G G+  
Sbjct: 323 SLLGFILNTGRSLVIVVNKWDGLNQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGN 382

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLY 381
           L + IK   +   KK+  S+ +    + 
Sbjct: 383 LFDSIKEAYACATKKMTTSLLTRILQMA 410



 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD         GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAHFNGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---------KKEISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L +E AD++L L +  +          + +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADVGIAQYLRKRQNKTTVLVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
                + D   + F   GL E I KI +        L   +         L+    + E 
Sbjct: 124 ---GIDADSHCAEFYQLGLGE-IEKIAASQGRGISALMEKVLPSVADKLSLANAEDHSES 179

Query: 393 ASLNEKDCGLD 403
           A  N  +   +
Sbjct: 180 AVENSDESAEE 190


>gi|294675553|ref|YP_003576169.1| ribosome-associated GTPase EngA [Prevotella ruminicola 23]
 gi|294472941|gb|ADE82330.1| ribosome-associated GTPase EngA [Prevotella ruminicola 23]
          Length = 437

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 19/175 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV+D  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRHAIVSDEAGTTRDRQYGKCEWNGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKS 329
             +DD+ E+E  K+  +  E ADL+L L +IN           +I     +  I +  K+
Sbjct: 62  VNSDDVFEEEIRKQVIIATEEADLVLFLCDINNGVTGWDMDVAQILRRAKLPVILVANKA 121

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK-LPFSIP 374
           D      ++Y+           IS+ TG G  +L++K+  IL  K K  L   IP
Sbjct: 122 DDGKDLYDQYEFYKLGLGDPFPISAATGSGTGDLLDKVLEILPEKPKDELEDGIP 176



 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 11/170 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   + +    E+     +  ++G  NAGKSS+ NA   +D  IVTDI GTTRD 
Sbjct: 154 DLLDKVLEILPEKPKDELEDGIPRFAVVGRPNAGKSSIINAFIGEDRNIVTDIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    D  G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRAIENSDVCVLMLDATRGIEA 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  +    N   + +  K DL    ++E      +   + +   ++
Sbjct: 274 QDMNIFQLIQKNNKSLVVVVNKWDLVEDKSQEVIKTFENAIRKRMAPFVD 323


>gi|90579361|ref|ZP_01235171.1| GTP-binding protein EngA [Vibrio angustum S14]
 gi|90440194|gb|EAS65375.1| GTP-binding protein EngA [Vibrio angustum S14]
          Length = 500

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 116/277 (41%), Gaps = 35/277 (12%)

Query: 133 DLISSETEMQRRL-----SMEGMSGELSSLYGQWIDK-LTHIRSFIEADLDFSEEEDVQN 186
           D I +++           +M  ++   +      +++ L      + A+L  +E  + Q 
Sbjct: 121 DGIDADSACAEFWRLGVDAMYQIAATQNRGVTALMERALAPFSDKLNAEL--AENGEEQE 178

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S +++ +     K ++S   ++     +     K+ I+G  N GKS+L N +  ++  +
Sbjct: 179 VSIEDLTSVEDIEKANLSEADAEAAYKRLQEQPIKLAIIGRPNVGKSTLTNRILGEERVV 238

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           V D+PGTTRD + I ++ +G    + DTAGIR   ++    EK  + +T   VE+A+++L
Sbjct: 239 VYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRRKNMHQAVEKFSVIQTLKAVEDANVVL 298

Query: 304 LLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEE----------------Y 339
           L+ +     S +++S            +    K D      +E                 
Sbjct: 299 LVIDARENISDQDLSLLGFALNAGRSLVIAVNKWDGLDNEVKERVKSELDRRLGFVDFAR 358

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            H IS+  G G+  L   +     +  K++  S+ + 
Sbjct: 359 IHFISALHGTGVGHLYESVIEAYQSATKRISTSLLTR 395



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 8/129 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      +LE +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYS 333
           + VE +  +++   +E AD++L L +  +    +          +      +  K D   
Sbjct: 65  EGVETKMAEQSLAAIEEADVVLFLVDGRAGLTAADEAIAKHLRSREKPTFLVVNKVDGID 124

Query: 334 TYTEEYDHL 342
             +   +  
Sbjct: 125 ADSACAEFW 133


>gi|254228662|ref|ZP_04922086.1| GTP-binding protein EngA [Vibrio sp. Ex25]
 gi|262395114|ref|YP_003286968.1| GTP-binding protein EngA [Vibrio sp. Ex25]
 gi|151938841|gb|EDN57675.1| GTP-binding protein EngA [Vibrio sp. Ex25]
 gi|262338708|gb|ACY52503.1| GTP-binding protein EngA [Vibrio sp. Ex25]
          Length = 498

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 103/239 (43%), Gaps = 28/239 (11%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L    S    DL  SE E+ +         D   L  D +   ++ +   +     K+ I
Sbjct: 156 LERALSPFFDDLLTSESEEGEIEDLTGF-EDEEPLVEDYTEEDAEAEFKRLQEQPIKLAI 214

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R    I 
Sbjct: 215 IGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRIN 274

Query: 285 ---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK----- 328
              EK  + +T   VE+A+++LL+ +     S +++S            +    K     
Sbjct: 275 ETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVIAVNKWDGLD 334

Query: 329 SDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           SD+  +  +E D           H IS+  G G+  L   I+   ++   ++  S+ + 
Sbjct: 335 SDVKESVKKELDRRLGFVDFARIHFISALHGTGVGHLFESIQEAYNSATTRVGTSVLTR 393



 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       L E +   + DT GI  T
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLY 332
           ++ VE +  +++   ++ AD++L L +  +     + +   +        + +  K D  
Sbjct: 65  EEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPSDAAIAAHLRKIEKPAMLVVNKIDGI 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D            ++  G G+  L+ +  S   +       
Sbjct: 125 DADAACADFWQLGVDDMYQIAAAHGRGVTALLERALSPFFDDLLTSES 172


>gi|27363891|ref|NP_759419.1| GTP-binding protein Der [Vibrio vulnificus CMCP6]
 gi|31340067|sp|Q8DF02|DER_VIBVU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|27360008|gb|AAO08946.1| GTP-binding protein EngA [Vibrio vulnificus CMCP6]
          Length = 496

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 120/284 (42%), Gaps = 38/284 (13%)

Query: 121 GKIDLLEAESL-ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            K+D ++A++  AD      +   +++     G +++L  + +D           + +  
Sbjct: 118 NKVDGIDADAASADFWQLGVDEMYQIAAAHGRG-VTALIERALDPFFDNLLSANNEGEIE 176

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +  D+++  +++        +  +     Q           K+ I+G  N GKS+L N +
Sbjct: 177 DLTDMEDEDAEQQEYSEEDAEESLKRLQDQ---------PIKLAIIGRPNVGKSTLTNRI 227

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEV 296
             ++  +V D+PGTTRD + I ++ +G    + DTAG+R   +  + VEK  + +T   V
Sbjct: 228 LGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRGKVHETVEKFSVVKTLKAV 287

Query: 297 ENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD-----LYSTYTEEYD--- 340
           E+A+++LL+ +     S +++S            +    K D     +     +E D   
Sbjct: 288 EDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWDGLDNEVKENVKKELDRRL 347

Query: 341 --------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                   H IS+  G G+  L   ++    +   ++  S+ + 
Sbjct: 348 GFVDFARIHFISALHGTGVGHLFESVQEAYRSATTRVGTSVLTR 391



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       +  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNID-----FIFIGTKSDLYS 333
           + VE +  +++   +  AD++L + +  +     + +   ++       + +  K D   
Sbjct: 65  EGVETKMAEQSLAAIREADVVLFMVDGRAGLTPSDEAIAAHLRKIEKATMLVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINK 357
                 D            ++  G G+  LI +
Sbjct: 125 ADAASADFWQLGVDEMYQIAAAHGRGVTALIER 157


>gi|325283649|ref|YP_004256190.1| GTP-binding protein engA [Deinococcus proteolyticus MRP]
 gi|324315458|gb|ADY26573.1| GTP-binding protein engA [Deinococcus proteolyticus MRP]
          Length = 441

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 104/265 (39%), Gaps = 35/265 (13%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEE-----------DVQNFSSKEVLNDILFLKNDISSH 206
              W+ +L      +   +D  + E                 S E    +  L + I  H
Sbjct: 100 VADWLRRLGRPVVVVANKIDSPKHEPYLAELWALGFGEPVAISAEHARGLDDLMDRIMEH 159

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +   +         +I ++G  N GKSSL NA+ + D AIV D+PGTTRD L ++ D  G
Sbjct: 160 LPADEGDVSEVAPIRISLIGRPNVGKSSLLNAITQSDRAIVADVPGTTRDSLDVEWDYGG 219

Query: 267 YLVKISDTAGIRETDD-IVEKEGIKRTFLEVENADLILLLKEINSKKE-------ISFPK 318
               + DTAGIR+  D  +E   I+R+   +E +DLI L+   +   +       +++  
Sbjct: 220 QRFVLVDTAGIRKKPDTAIEDYAIQRSQAAIERSDLIWLVLNADDLGDHELKLANLAYDS 279

Query: 319 NIDFIFIGTKSDLYSTYT-----EEYDH-----------LISSFTGEGLEELINKIKSIL 362
               I +  K DL          +E D              S+    G+ +++ +   + 
Sbjct: 280 GKPVIVVVNKWDLVPDEDLKRAEKELDQKLFHIAYAPRVYTSAINDYGIHDMLAEAMKLY 339

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTV 387
                ++P +  +    ++ +   V
Sbjct: 340 DKWQSRVPTAELNRWLEIWQMKHAV 364



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSLFN L  +  A+V D PG TRD     +    + + + DT G+  +
Sbjct: 3   KVAIVGRPNVGKSSLFNRLIGRREAVVADFPGVTRDAKEEIMLYHNHRITLVDTGGL-WS 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D  E    ++    +E AD ++ + +             +         + +  K D  
Sbjct: 62  GDEWEAVIREKAEWALEGADAVIFVLDPRDGLSAADYEVADWLRRLGRPVVVVANKIDSP 121

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                L   +   +     IS+    GL++L+++I   L      +    P  
Sbjct: 122 KHEPYLAELWALGFGEPVAISAEHARGLDDLMDRIMEHLPADEGDVSEVAPIR 174


>gi|320451137|ref|YP_004203233.1| ribosome-associated GTPase EngA [Thermus scotoductus SA-01]
 gi|320151306|gb|ADW22684.1| ribosome-associated GTPase EngA [Thermus scotoductus SA-01]
          Length = 432

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 24/183 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G K+ I+G  NAGKSSL NA+  ++  IV++ PGTTRD + +     G    + DTAGIR
Sbjct: 173 GIKLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDAIDVHFTFRGQPFVLVDTAGIR 232

Query: 279 ETDD-IVEKEGIKRTFLEVENADLILLLKEINS--KKEISFPKN-----IDFIFIGTKSD 330
           +  + +VE+  I+R+   +E AD++LL+ +      +E+    +        + + TK D
Sbjct: 233 KRPESLVEELAIRRSLKAIEEADVVLLVVDPFQVGDRELKLANHALEAGKPVLLVITKWD 292

Query: 331 LYST---------YTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           L              E+  H         S+FT + L+++ ++   +      ++P +  
Sbjct: 293 LVRKEEAPKVRRELKEKLAHLEHLPRVYTSAFTKQNLDKIFSEAVRLFELNHTRIPTAEL 352

Query: 375 SHK 377
           +  
Sbjct: 353 NRW 355



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 87/206 (42%), Gaps = 22/206 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+VI+G  N GKSSLFN L  K  A+V D+PG TRD+    ++ E     + DT G+  +
Sbjct: 3   KVVIVGRPNVGKSSLFNRLLGKRSAVVADVPGVTRDLKEGVVESEKGRFLLVDTGGL-WS 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D  EK+  ++    +E+A+++L   +  S+         E    K    I + TK D  
Sbjct: 62  GDRWEKKIQEKVDQALEDAEVVLFAVDGRSELTQADYEVAEYLRKKGRPVILVATKVDDP 121

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                L   Y   +      SS    GLEEL+  I   L  +  +    +   K  +   
Sbjct: 122 KHEHYLGPLYALGFGDPIPTSSEHARGLEELLEAIWEKLPVRHIESEPEVAGIKLAIVGR 181

Query: 384 SQT-VRYLEMASLNEKDCGLDIIAEN 408
                  L  A L E+     I++E 
Sbjct: 182 PNAGKSSLLNAILGEERV---IVSEE 204


>gi|289522946|ref|ZP_06439800.1| ribosome-associated GTPase EngA [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503489|gb|EFD24653.1| ribosome-associated GTPase EngA [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 443

 Score =  126 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 15/199 (7%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +   +  +     +  + +     +    L F   EDV   S++   N    L + + S+
Sbjct: 109 LRRSNRRVIVAVNKIDEPMHEPLLYEAFALGF---EDVIGVSAEHNRNIP-DLLDKVVSY 164

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           I      +      KI I+G  N GKSS+FN+L  ++ AIV+++PGTTRD +  ++  EG
Sbjct: 165 IDSEDSFQEDGKTIKISIVGRPNVGKSSIFNSLIGEERAIVSNLPGTTRDPIDTEITFEG 224

Query: 267 YLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEIS 315
               + DTAG+R+     D +E   + R    ++ +D++LL+ ++             I+
Sbjct: 225 KKYLLIDTAGLRKKSRLKDDIEFYSLLRAERAIDRSDVVLLVLDVTELVTDQDKRIAGIA 284

Query: 316 FPKNIDFIFIGTKSDLYST 334
             K    +    K DL   
Sbjct: 285 LEKGKGIVVAINKWDLLPE 303



 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 17/173 (9%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           RN   + I+G +N GKS+LFN L +K +AIV DIPG TRD L   ++  G    + DT G
Sbjct: 3   RNTNVVAIIGRANVGKSTLFNRLIQKRMAIVDDIPGVTRDRLYAQVEWAGKSFYLVDTGG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
               D+ +     K+    +E A +I+ + +             EI    N   I    K
Sbjct: 63  FPNEDEPLFDLVGKQIDRAIEEASVIIFVVDGREGILPLDFRIAEILRRSNRRVIVAVNK 122

Query: 329 SD-------LYSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D       LY  +   ++    +S+     + +L++K+ S + ++       
Sbjct: 123 IDEPMHEPLLYEAFALGFEDVIGVSAEHNRNIPDLLDKVVSYIDSEDSFQEDG 175


>gi|254478784|ref|ZP_05092152.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
 gi|214035296|gb|EEB76002.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
          Length = 439

 Score =  126 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 30/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++   + +  + E      KI ++G  N GKSSL N +  ++  IV+DIPGTTRD 
Sbjct: 156 ELLDEVIKRLPENDV-EYEEETIKIAVIGRPNVGKSSLVNRILGEERVIVSDIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKK-- 312
           +      +G    + DTAGIR    I   +E+  + R    +E AD+ LL+ +       
Sbjct: 215 IDTPFTKDGRNYILIDTAGIRRKSRISESIERYSVLRALAAIERADICLLMIDATEGPTE 274

Query: 313 ------EISFPKNIDFIFIGTKSDLYSTYTEEY------------------DHLISSFTG 348
                   +F      I +  K D+    +  Y                     IS+ TG
Sbjct: 275 QDTKIAGYAFENGKGIIILVNKWDIVEKDSNTYKEYTEMIREKLAFISFAPILFISAKTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSH 376
           + + +++  +  +     K++   + ++
Sbjct: 335 QRIHKVLETVDKVWEEYNKRITTGLLNN 362



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 20/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN + K+ ++IV DIPG TRD +  + +       + DT G+    
Sbjct: 6   VAIVGRPNVGKSTLFNRILKRRISIVEDIPGVTRDRIYGNAEWLNRKFILVDTGGLDPDP 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLY 332
             V    +K +    +E ADLIL + +         +EI+        + I +  K D +
Sbjct: 66  KDVIFSKVKLQVEAAIEAADLILFVVDAREGLVPEDEEIANMLRKTKKEVILVCNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINK-IKSILSNKFKKLPFSI 373
                 +             IS+  G G+ EL+++ IK +  N  +    +I
Sbjct: 126 KEMPASFYDFFKLGLGEPIPISASNGLGIGELLDEVIKRLPENDVEYEEETI 177


>gi|20808046|ref|NP_623217.1| GTP-binding protein EngA [Thermoanaerobacter tengcongensis MB4]
 gi|26006716|sp|Q8R9J1|DER_THETN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|20516626|gb|AAM24821.1| predicted GTPases [Thermoanaerobacter tengcongensis MB4]
          Length = 439

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 30/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++   + +  + E      KI ++G  N GKSSL N +  ++  IV+DIPGTTRD 
Sbjct: 156 ELLDEVIKRLPENDV-EYEEETIKIAVIGRPNVGKSSLVNRILGEERVIVSDIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKK-- 312
           +      +G    + DTAGIR    I   +E+  + R    +E AD+ LL+ +       
Sbjct: 215 IDTPFTKDGRNYILIDTAGIRRKSRISESIERYSVLRALAAIERADICLLMIDATEGPTE 274

Query: 313 ------EISFPKNIDFIFIGTKSDLYSTYTEEY------------------DHLISSFTG 348
                   +F      I +  K D+    +  Y                     IS+ TG
Sbjct: 275 QDTKIAGYAFENGKGIIILVNKWDIVEKDSNTYKEYTEMIREKLAFISFAPILFISAKTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSH 376
           + + +++  +  +     K++   + ++
Sbjct: 335 QRIHKVLETVDKVWEEYNKRITTGLLNN 362



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 20/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN + K+ ++IV DIPG TRD +  + +       + DT G+    
Sbjct: 6   VAIVGRPNVGKSTLFNRILKRRISIVEDIPGVTRDRIYGNAEWLNRKFILVDTGGLDPDP 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLY 332
             V    +K +    +E ADLIL + +         +EI+        + I +  K D +
Sbjct: 66  KDVIFSKVKLQVEAAIEAADLILFVVDAREGLVPEDEEIANMLRKTKKEVILVCNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINK-IKSILSNKFKKLPFSI 373
                 +             IS+  G G+ EL+++ IK +  N  +    +I
Sbjct: 126 KEMPASFYDFFKLGLGEPIPISASNGLGIGELLDEVIKRLPENDVEYEEETI 177


>gi|251792908|ref|YP_003007634.1| GTP-binding protein EngA [Aggregatibacter aphrophilus NJ8700]
 gi|247534301|gb|ACS97547.1| GTP-binding protein EngA [Aggregatibacter aphrophilus NJ8700]
          Length = 509

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 111/268 (41%), Gaps = 30/268 (11%)

Query: 143 RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND 202
            +++     G +++L  Q +  L    +  E +     ++  +     E   D  F   +
Sbjct: 143 AQIAASQGRG-IANLMEQVLSPLAEKMAEKEEESAVENDDVSEMAQHDEWDEDFDFSNEE 201

Query: 203 ISSHISQGKLGEII--RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            ++ + +    E I      KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I
Sbjct: 202 DTALLDEELAQEQIPDSQNIKIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYI 261

Query: 261 DLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEI 314
            ++ +G    + DTAG+R+   +    EK  + +T   +++A+++LL  +     S +++
Sbjct: 262 PMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDL 321

Query: 315 SFP-----KNIDFIFIGTKSD-----LYSTYTEEYD-----------HLISSFTGEGLEE 353
           S            + +  K D     +      E D           H IS+  G G+  
Sbjct: 322 SLLGFILNAGRSLVIVVNKWDGLNQEVKDRVKSELDRRLDFIDFARVHFISALHGSGVGN 381

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLY 381
           L   +K       +K+  S+ +    + 
Sbjct: 382 LFESVKEAYECATQKMTTSMLTRILQIA 409



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 14/142 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHLAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L +E AD++L L +  +            +   +N   + +  K D  
Sbjct: 66  EGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADIGIANYLRQRQNKTTVVVANKVD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEEL 354
                + D   + F   GL E+
Sbjct: 124 ---GIDADSHCAEFYQLGLGEI 142


>gi|168705339|ref|ZP_02737616.1| tRNA modification GTPase TrmE [Gemmata obscuriglobus UQM 2246]
          Length = 275

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 92/178 (51%), Gaps = 4/178 (2%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G  +   +K+VI G  N GKSSL NALA    A+V+D+ GTTRD +++    +G+ V++ 
Sbjct: 64  GRHLIEPWKVVIAGAPNVGKSSLINALAGYQRAVVSDVAGTTRDTVSVRTAFDGWPVELI 123

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLY 332
           DTAGIR+ + + E EGI R    ++ ADL++ + +  +   + +P       +  KSD  
Sbjct: 124 DTAGIRDAEGL-EAEGIARAKRALDEADLVVWVLD-GAALRLEWPGAGRLHVVINKSDAL 181

Query: 333 STYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
               +      L+S+ TGEG++ L N + + L  +      ++P   + +  +     
Sbjct: 182 VNRNDIARTLPLVSARTGEGVQNLANDLVTKLVPQPPAAGAAVPYTPQLVDLVRTAAE 239


>gi|304317178|ref|YP_003852323.1| ribosome-associated GTPase EngA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778680|gb|ADL69239.1| ribosome-associated GTPase EngA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 439

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 34/235 (14%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           +    L F E   +   +   +   +  +  +I  HI             KI  +G  N 
Sbjct: 133 YDSMRLGFGEPIAISASNGLGIGELLDEVIKNIPEHIDDYDE-----ETIKICFIGKPNV 187

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKE 287
           GKSSL N +  ++ AIV+DIPGTTRD L    + +     I DTAG+R+    +D +E+ 
Sbjct: 188 GKSSLVNKILGEERAIVSDIPGTTRDALDTYFEKDNKKYVIIDTAGMRKKGRIEDKIERY 247

Query: 288 GIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYST----- 334
            + R    ++ +D+ +L+ +               +F +N   I    K DL        
Sbjct: 248 SVLRALSAIDRSDICILVIDATEGPTEQDTKIAGYAFEQNKAIIIAVNKWDLIEKDNNTV 307

Query: 335 ------YTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                   E++  +       IS+ TG+ L +L  +I S+     K++   + ++
Sbjct: 308 NEYLKLIKEKFSFMSFASTIFISAKTGQRLNKLFEEINSVWEEYNKRISTGLLNN 362



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 71/172 (41%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +  + ++IV D PG TRD +  + +  G    + DT G+  ++
Sbjct: 6   VGIVGRPNVGKSTLFNKITGQRISIVEDKPGVTRDRIYYETEWLGRKFILVDTGGLEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLY 332
           +D    +   +    ++  DLIL + +         ++I+      +   I +  K D +
Sbjct: 66  EDEFFSKIRMQVEAALKTVDLILFVIDAKDGLSPVDEDIANMLRKSHKKVILVLNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                 Y             IS+  G G+ EL++++   +            
Sbjct: 126 KEMPISYYDSMRLGFGEPIAISASNGLGIGELLDEVIKNIPEHIDDYDEETI 177


>gi|15601970|ref|NP_245042.1| GTP-binding protein EngA [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431507|sp|P57812|DER_PASMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|12720316|gb|AAK02189.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 510

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 113/268 (42%), Gaps = 31/268 (11%)

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV-QNFSSKEVLNDILFLKND 202
           +++     G +S+L  Q +  +    +    +    E  DV +     E  +D  F   +
Sbjct: 144 QIAASQGRG-VSALMEQVLAPIAEKMNAESPEQSAVENTDVSETGEQDEWDHDFDFANEE 202

Query: 203 ISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            ++ +     +  E      KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I
Sbjct: 203 DTALLDDAIAEELEAQDKNIKIAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYI 262

Query: 261 DLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEI 314
            ++ +G    I DTAG+R+   +    EK  + +T   +++A+++LL  +     S +++
Sbjct: 263 PMERDGQHYTIIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLTIDAREGVSDQDL 322

Query: 315 SFP-----KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEE 353
           S            + +  K      D+      E D           H IS+  G G+  
Sbjct: 323 SLLGFILNAGRSLVIVVNKWDGLNQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGN 382

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLY 381
           L + I+   +   +K+  S+ +    + 
Sbjct: 383 LFDSIQEAYACATQKMTTSMLTRILQMA 410



 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 51/215 (23%), Positives = 92/215 (42%), Gaps = 23/215 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L +E AD++L L +  +            +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLTSADIGIANYLRQRQNKITVVVANKTDGI 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLY 381
              +   +            ++  G G+  L+ ++ + ++ K   +    S   +     
Sbjct: 126 DADSHCAEFYQLGLGEVEQIAASQGRGVSALMEQVLAPIAEKMNAESPEQSAVENTDVSE 185

Query: 382 HLSQTVRYLEMASLNEKDCGL--DIIAENLRLASV 414
              Q     +    NE+D  L  D IAE L  A  
Sbjct: 186 TGEQDEWDHDFDFANEEDTALLDDAIAEEL-EAQD 219


>gi|114566850|ref|YP_754004.1| hypothetical protein Swol_1325 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337785|gb|ABI68633.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 441

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 97/248 (39%), Gaps = 12/248 (4%)

Query: 99  LAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS-ETEMQRRLSMEGMSGELSSL 157
           +     +R      F+R      ++ + EA+ +  ++ S E        +  +  + +  
Sbjct: 54  IIDTGGIRFNEGDIFAREIKLQAELAIEEADVIVLVLDSREGITAEDEQVANLLRKSNKP 113

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
                +K+   +  ++    +          S     +   L + + SH       E   
Sbjct: 114 VVLAANKVEEFKKQLDYYEFYKLGLGDPIPVSAMHGYNTNELLDAVISHFKPALEYEEEG 173

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  KI I+G  N GKSSL NAL  ++  IV+D+PGTTRD +      +G    + DTAG+
Sbjct: 174 DAIKIAIVGRPNVGKSSLVNALLGEERVIVSDVPGTTRDAIDTPFQFKGQNYLLIDTAGM 233

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF--------IFIG 326
           R    I    E+  + RT   +E AD++L++ +          K   +        I + 
Sbjct: 234 RRKSRIKETTERYSVIRTLKAIERADVVLIMLDATEGVAEQDKKIAGYVHEQSRANIIVV 293

Query: 327 TKSDLYST 334
            K DL   
Sbjct: 294 NKWDLVEK 301



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 72/169 (42%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA    AIV DIPG TRD L    D  G    I DT GIR   
Sbjct: 5   VAIVGRPNVGKSTLFNRLAGARKAIVEDIPGVTRDRLYDSSDWNGREFIIIDTGGIRFNE 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLY 332
            DI  +E   +  L +E AD+I+L+ +    I ++ E    +    N   +    K + +
Sbjct: 65  GDIFAREIKLQAELAIEEADVIVLVLDSREGITAEDEQVANLLRKSNKPVVLAANKVEEF 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
               + Y+            S+  G    EL++ + S      +     
Sbjct: 125 KKQLDYYEFYKLGLGDPIPVSAMHGYNTNELLDAVISHFKPALEYEEEG 173


>gi|309791206|ref|ZP_07685738.1| small GTP-binding protein [Oscillochloris trichoides DG6]
 gi|308226768|gb|EFO80464.1| small GTP-binding protein [Oscillochloris trichoides DG6]
          Length = 525

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 113/305 (37%), Gaps = 30/305 (9%)

Query: 111 GEFSRRAFENGKIDLLEAESLADLISS-ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
            E SRR  E   + + EA+++  ++   E        +  +    S      ++K   + 
Sbjct: 138 AEMSRRTREQANLAIEEADAVIFMVDGREGMTAADNEVADVLRGTSKPVVLAVNKCDSVE 197

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
             ++A   ++         S         + + +       +  +       I I+G  N
Sbjct: 198 RNLDAVEFYALNLGEPIPMSAFHSLGTGDVLDRLVEAFPPYQAPDDTERHLHIAIVGRPN 257

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEK 286
            GKSSL N L  ++ ++V+ IPGTTRD +  ++   G  V + DTAGIR +  I   +EK
Sbjct: 258 VGKSSLLNKLLGQERSVVSAIPGTTRDSIDTEITFHGERVTLIDTAGIRRSGRIEQGIEK 317

Query: 287 EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEE 338
             + RT   +E  D+ LLL +              +          +  K D+     E 
Sbjct: 318 YSVMRTLRAIERCDVALLLIDAEEGITAQDTHIAGMVLDAKKGIAILVNKWDVIEKDNET 377

Query: 339 YDHL------------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +                     IS+ +G+ +  +I   + I   + K++P    ++    
Sbjct: 378 FQEYEDQVRQAFKFIDYAPVLFISALSGQRVSRVIQLAQEIYDQRQKRVPTGELNNFLRQ 437

Query: 381 YHLSQ 385
             L Q
Sbjct: 438 AVLDQ 442



 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 29/184 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---R 278
           + ++G  N GKS+ FN L  +  AIV D+PGTTRD +  D    G    + DTAG+    
Sbjct: 71  VALVGRPNVGKSTFFNRLIGERRAIVEDMPGTTRDRIYGDTFWNGRDFTVVDTAGLLFGG 130

Query: 279 ETDDIVEKEGIKRTFL----EVENADLILLLKEI--------NSKKEISFPKNIDFIFIG 326
           +  ++   E  +RT       +E AD ++ + +         N   ++    +   +   
Sbjct: 131 DDPNLPVAEMSRRTREQANLAIEEADAVIFMVDGREGMTAADNEVADVLRGTSKPVVLAV 190

Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            K D      +  +           +S+F   G  ++++++                  +
Sbjct: 191 NKCDSVERNLDAVEFYALNLGEPIPMSAFHSLGTGDVLDRLVEAFPPYQAPDDT-----E 245

Query: 378 RHLY 381
           RHL+
Sbjct: 246 RHLH 249


>gi|315634680|ref|ZP_07889964.1| ribosome-associated GTPase EngA [Aggregatibacter segnis ATCC 33393]
 gi|315476628|gb|EFU67376.1| ribosome-associated GTPase EngA [Aggregatibacter segnis ATCC 33393]
          Length = 512

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 114/290 (39%), Gaps = 41/290 (14%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++       +       ++          ++++    +   A+ + +EE  V+  
Sbjct: 123 DGIDADSHCAEFYQLGLGEIAQIAASQGRGIASLMEQVLTPLAEQMAEAEKTEESAVEIT 182

Query: 188 S-------SKEVLNDILFLKNDISSHISQ--GKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
                     E   D  F   + ++ + +   +         KI I+G  N GKS+L N 
Sbjct: 183 DVSSEVAEFDEWDEDFDFSNEEDTALLDEELAQEQTPDNQNIKIAIVGRPNVGKSTLTNR 242

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLE 295
           +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   
Sbjct: 243 ILGEDRVVVYDMPGTTRDSIYIPMERDGQNYTLIDTAGVRKRGKVHLAVEKFSVIKTLQA 302

Query: 296 VENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD-----LYSTYTEEYD-- 340
           +++A+++LL  +     S +++S            + +  K D     +      E D  
Sbjct: 303 IQDANVVLLTIDARENISDQDLSLLGFILNSGRSLVIVVNKWDGLNQEVKDRVKSELDRR 362

Query: 341 ---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                    H IS+  G G+  L   +K       +K+  S+ +    + 
Sbjct: 363 LDFIDFARVHFISALHGSGVGNLFESVKEAYECATQKMTTSMLTRILQIA 412



 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 80/200 (40%), Gaps = 22/200 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAHLAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L +E AD++L L +  +            +   +N   + +  K D  
Sbjct: 66  EGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADIGIANYLRQRQNKTTVVVANKVD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-- 390
                + D   + F   GL E+     S        +   +      +    +T      
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIAQIAASQGRGIASLMEQVLTPLAEQMAEAEKTEESAVE 180

Query: 391 ------EMASLNEKDCGLDI 404
                 E+A  +E D   D 
Sbjct: 181 ITDVSSEVAEFDEWDEDFDF 200


>gi|301155940|emb|CBW15410.1| predicted GTP-binding protein [Haemophilus parainfluenzae T3T1]
          Length = 506

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 110/265 (41%), Gaps = 29/265 (10%)

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
           +++     G ++ L  Q +  L       EA+ D + +E+ +        +        +
Sbjct: 144 QIAASQGRG-VTQLMEQVLAPLAEKLQENEAENDRTSDEE-EKDEWDHEFDFDSEEDTSL 201

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
                  +L E      KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++
Sbjct: 202 IDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPME 261

Query: 264 LEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP 317
            +G    + DTAG+R+   +    EK  + +T   +++A+++LL  +     S +++S  
Sbjct: 262 RDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLL 321

Query: 318 -----KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEELIN 356
                     + +  K      D+      E D           H IS+  G G+  L +
Sbjct: 322 GFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFD 381

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLY 381
            IK   +   +K+  S+ +    + 
Sbjct: 382 SIKEAYACATQKMTTSLLTRILQMA 406



 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANISGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK------NIDFIFIGTKSDLY 332
           + VE++  +++ L +E AD++L L +  +     +I          N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLTAADIGIANYLRQRTNKTTVVVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELIN 356
                + D   + F   GL E+  
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQ 144


>gi|332799113|ref|YP_004460612.1| GTP-binding protein engA [Tepidanaerobacter sp. Re1]
 gi|332696848|gb|AEE91305.1| GTP-binding protein engA [Tepidanaerobacter sp. Re1]
          Length = 439

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I+ +I +  +     +  K+ I+G  N GKSSL NA+  ++  IV+DIPGTTRD 
Sbjct: 154 DLLDKITDYIEEPHILSEDEDIIKVAIIGKPNVGKSSLLNAILGEERVIVSDIPGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +    ++ G  +   DTAG+R+   I   VE     R    ++ AD++L++ + +     
Sbjct: 214 IDSYFEINGKKMLFIDTAGLRKKSRISEDVEYYSTVRALGAIDRADVVLMVLDASQNISE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
                  I+       I I  K DL    +   D        E
Sbjct: 274 QDKRIAGIAHEAGKAVIIIVNKWDLIDKDSHTTDEFSKKIKNE 316



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 18/163 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + ++G  N GKS+LFN +  K ++IV D PG TRD +  + +  G    + DT G+  
Sbjct: 3   FIVAVVGKPNVGKSTLFNRIIGKRISIVDDKPGVTRDRIYGEAEWNGKKFTMVDTGGVEP 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
              DI+  +  ++    +E A+LIL + +             +I        + +  K D
Sbjct: 63  ASKDIILSQMKRQADFAIETANLILFMVDGKEGLTPTDLDVAQILRRSGKPVLLVVNKVD 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
            Y+    +Y+           IS+  G  + +L++KI   +  
Sbjct: 123 NYTNTAYDYEFYKLGFGDPIFISAVHGLAVGDLLDKITDYIEE 165


>gi|332977201|gb|EGK13997.1| ribosome-associated GTPase EngA [Desmospora sp. 8437]
          Length = 455

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 11/184 (5%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
           ++KL  ++        +    D     S         L + +   +   +  E   +  +
Sbjct: 134 VNKLDDVKHHENVYEFYRLGFDEPIGISSLHGTGTGDLLDAVVDRLPDREEEEYDSDTIR 193

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +  ++  IV+ + GTTRD +      EG    I DTAG+R+  
Sbjct: 194 VSIIGRPNVGKSSLVNRILGEERVIVSPVAGTTRDAVDTPFTHEGQDYVIVDTAGMRKRG 253

Query: 282 DIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            +    EK  + R    +E AD++L++ +              I+       +F+  K D
Sbjct: 254 KVYETTEKYSVLRALRAIERADVVLIVLDGTEGVTEQDKRVAGIAHDAGRGAVFVVNKWD 313

Query: 331 LYST 334
               
Sbjct: 314 AVEK 317



 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 20/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           + I+G  N GKS+LFN +A + +AIV D PG TRD +    D  G    + DT G+   +
Sbjct: 21  VAIVGRPNVGKSTLFNRIAGERIAIVEDKPGITRDRIYTRGDWSGRHFHVIDTGGLEFGK 80

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDL 331
            D++VE     +  L +E AD+IL + +    + S  E    I    N   +    K D 
Sbjct: 81  KDEVVEH-IRHQAELAIEEADVILFMVDGHDGVTSTDEEVSRILHRSNKPVVLAVNKLDD 139

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
              +   Y+            SS  G G  +L++ +   L ++ ++   S
Sbjct: 140 VKHHENVYEFYRLGFDEPIGISSLHGTGTGDLLDAVVDRLPDREEEEYDS 189


>gi|37197696|dbj|BAC93534.1| predicted GTP-binding protein [Vibrio vulnificus YJ016]
          Length = 511

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 121/284 (42%), Gaps = 38/284 (13%)

Query: 121 GKIDLLEAESL-ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            K+D ++A++  AD      +   +++     G +++L  + +D          ++ +  
Sbjct: 133 NKVDGIDADAASADFWQLGVDEMYQIAAAHGRG-VTALIERALDPFFDNLLSTNSEGEIE 191

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +  ++++  +++        +  +     Q           K+ I+G  N GKS+L N +
Sbjct: 192 DLTNMEDEEAEQQEYSEEDAEESLKRLQDQ---------PIKLAIIGRPNVGKSTLTNRI 242

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEV 296
             ++  +V D+PGTTRD + I ++ +G    + DTAG+R   +  + VEK  + +T   V
Sbjct: 243 LGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRGKVHETVEKFSVVKTLKAV 302

Query: 297 ENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD-----LYSTYTEEYD--- 340
           E+A+++LL+ +     S +++S            +    K D     +     +E D   
Sbjct: 303 EDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWDGLDNEVKENVKKELDRRL 362

Query: 341 --------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                   H IS+  G G+  L   ++    +   ++  S+ + 
Sbjct: 363 GFVDFARIHFISALHGTGVGHLFESVQEAYRSATTRVGTSVLTR 406



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       +  +   + DT GI  ++
Sbjct: 20  VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGIDGSE 79

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNID-----FIFIGTKSDLYS 333
           + VE +  +++   +  AD++L + +  +     + +   ++       + +  K D   
Sbjct: 80  EGVETKMAEQSLAAIREADVVLFMVDGRAGLTPSDEAIAAHLRKIEKATMLVVNKVDGID 139

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINK 357
                 D            ++  G G+  LI +
Sbjct: 140 ADAASADFWQLGVDEMYQIAAAHGRGVTALIER 172


>gi|325294541|ref|YP_004281055.1| GTP-binding protein engA [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325064989|gb|ADY72996.1| GTP-binding protein engA [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 478

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 34/204 (16%)

Query: 200 KNDISSHISQGKLGE-------IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           + ++   I   + G+       + +   K+ I+G  N GKS+L NAL  ++ AIV+DIPG
Sbjct: 194 REELEELIDTLEGGKDYIIEEDVEKEPIKVAIVGRPNMGKSTLLNALVGEERAIVSDIPG 253

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310
           TTRD +     +        DTAGIR    I  +E     R    ++ AD+++LL +   
Sbjct: 254 TTRDAIDTYAKIGDDEFIFIDTAGIRRRGKIKDIEYYSYLRALDAIDRADVVVLLVDAEE 313

Query: 311 KK--------EISFPKNIDFIFIGTKSD----------LYSTYTEEYDH-------LISS 345
                      I+  K    I    K D          L+      +D         IS+
Sbjct: 314 GPTDRDTKISGIALDKFKPIIIAVNKIDKLQNQKEWERLHRELDLNFDFIPYAPRVFISA 373

Query: 346 FTGEGLEELINKIKSILSNKFKKL 369
              +GLEELI +IK +     KK+
Sbjct: 374 KEKKGLEELIKQIKDVYKQYTKKV 397



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSLFN L +K VAI+ D PG TRD +  + D++ + V + DT G+  + 
Sbjct: 7   ISIVGRPNVGKSSLFNRLLEKKVAIIDDTPGVTRDRIVQEADIDDHKVILVDTGGVDTSG 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFI--GTKSD--- 330
           +   KE  ++    +E AD+I+ + +         ++     +      I    K D   
Sbjct: 67  EGFAKETTEQAKRAMEEADIIVFVVDGKEGITPLDEEVAKILRKWKKPIIVAVNKIDEPY 126

Query: 331 ----LYSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKK 368
               +Y  Y   +     IS+    G+  L  +I  +L  + ++
Sbjct: 127 MEDLIYDAYRLGFPEVIPISTIHKIGIPTLKERILELLPQELRE 170


>gi|161486654|ref|NP_933563.2| GTP-binding protein EngA [Vibrio vulnificus YJ016]
 gi|41016999|sp|Q7MNE7|DER_VIBVY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
          Length = 496

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 121/284 (42%), Gaps = 38/284 (13%)

Query: 121 GKIDLLEAESL-ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            K+D ++A++  AD      +   +++     G +++L  + +D          ++ +  
Sbjct: 118 NKVDGIDADAASADFWQLGVDEMYQIAAAHGRG-VTALIERALDPFFDNLLSTNSEGEIE 176

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +  ++++  +++        +  +     Q           K+ I+G  N GKS+L N +
Sbjct: 177 DLTNMEDEEAEQQEYSEEDAEESLKRLQDQ---------PIKLAIIGRPNVGKSTLTNRI 227

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEV 296
             ++  +V D+PGTTRD + I ++ +G    + DTAG+R   +  + VEK  + +T   V
Sbjct: 228 LGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRGKVHETVEKFSVVKTLKAV 287

Query: 297 ENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD-----LYSTYTEEYD--- 340
           E+A+++LL+ +     S +++S            +    K D     +     +E D   
Sbjct: 288 EDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWDGLDNEVKENVKKELDRRL 347

Query: 341 --------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                   H IS+  G G+  L   ++    +   ++  S+ + 
Sbjct: 348 GFVDFARIHFISALHGTGVGHLFESVQEAYRSATTRVGTSVLTR 391



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       +  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNID-----FIFIGTKSDLYS 333
           + VE +  +++   +  AD++L + +  +     + +   ++       + +  K D   
Sbjct: 65  EGVETKMAEQSLAAIREADVVLFMVDGRAGLTPSDEAIAAHLRKIEKATMLVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINK 357
                 D            ++  G G+  LI +
Sbjct: 125 ADAASADFWQLGVDEMYQIAAAHGRGVTALIER 157


>gi|325578764|ref|ZP_08148811.1| ribosome-associated GTPase EngA [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159588|gb|EGC71720.1| ribosome-associated GTPase EngA [Haemophilus parainfluenzae ATCC
           33392]
          Length = 506

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 115/265 (43%), Gaps = 29/265 (10%)

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
           +++     G ++ L  Q +  L       EA+ D + +E+ ++    E   D     + I
Sbjct: 144 QIAASQGRG-VTQLMEQVLAPLAEKLQENEAENDRTSDEEEKDEWDHEFDFDSEEDTSLI 202

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
              + +    E  +N  KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++
Sbjct: 203 DDALDEELEEEQDKN-IKIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPME 261

Query: 264 LEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP 317
            +G    + DTAG+R+   +    EK  + +T   +++A+++LL  +     S +++S  
Sbjct: 262 RDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLL 321

Query: 318 -----KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEELIN 356
                     + +  K      D+      E D           H IS+  G G+  L +
Sbjct: 322 GFILNTGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFD 381

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLY 381
            IK   +   +K+  S+ +    + 
Sbjct: 382 SIKEAYACATQKMTTSLLTRILQMA 406



 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANISGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK------NIDFIFIGTKSDLY 332
           + VE++  +++ L +E AD++L L +  +     +I          N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLTAADIGIANYLRQRTNKTTVVVANKTDGI 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
              +   +            ++  G G+ +L+ ++ + L+ K ++   
Sbjct: 126 DADSHCAEFYQLGLGKIEQIAASQGRGVTQLMEQVLAPLAEKLQENEA 173


>gi|332305588|ref|YP_004433439.1| ribosome-associated GTPase EngA [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172917|gb|AEE22171.1| ribosome-associated GTPase EngA [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 482

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 105/276 (38%), Gaps = 50/276 (18%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I  ++E     ++       ++        Q +       +    D+   EEE+V   
Sbjct: 121 DGIDGDSESADFFALGLGDVNQIAAAHGRGVTQLLTHTLMPLAEQFPDMQVPEEEEV--- 177

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
                       +  +   ++            K+ I+G  N GKS+L N +  ++  +V
Sbjct: 178 ------TQEQDAEKQLEKLLAS---------PIKLAIVGKPNVGKSTLTNRILGEERVVV 222

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILL 304
            D PGTTRD + I ++ +G    + DTAG+R      + VEK  I +T   +E A+++LL
Sbjct: 223 YDQPGTTRDSIFIPMERDGREYVLIDTAGVRRRRSISEAVEKFSIVKTLQAIEEANVVLL 282

Query: 305 LKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD----------- 340
           + +     + +++S            +    K      D+      E D           
Sbjct: 283 VIDAQEGITDQDLSLLGFVLNSGRSLVLAVNKWDGLDKDVKDEIKRELDRRLGFIDFARL 342

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           H IS+  G  +  L   ++   ++  K++  S+ + 
Sbjct: 343 HFISALHGTNVGHLFESVQEAYNSATKRINTSMLTR 378



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 20/191 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      + EG    + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYEGLQFIVVDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
             ++     ++ + ++ AD++L L +       + + I+     +N     +  K D   
Sbjct: 65  QGIDMAMANQSLMAIDEADVVLFLVDARVGLTGADQGIAEHLRKQNKSVYVVANKVDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             +E  D           I++  G G+ +L+      L    ++ P      +  +    
Sbjct: 125 GDSESADFFALGLGDVNQIAAAHGRGVTQLLTH---TLMPLAEQFPDMQVPEEEEVTQEQ 181

Query: 385 QTVRYLEMASL 395
              + LE    
Sbjct: 182 DAEKQLEKLLA 192


>gi|260583275|ref|ZP_05851051.1| ribosome-associated GTPase EngA [Haemophilus influenzae NT127]
 gi|260093682|gb|EEW77594.1| ribosome-associated GTPase EngA [Haemophilus influenzae NT127]
          Length = 503

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 113/281 (40%), Gaps = 32/281 (11%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++       +     E ++        Q ++++    +    + D ++    +  
Sbjct: 123 DGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEEVQ 182

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
              E   D    ++      +  +  E      KI I+G  N GKS+L N +  +D  +V
Sbjct: 183 DEWEQEFDFDSEEDTSLLDEALEESEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVVV 242

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILL 304
            D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   +++A+++LL
Sbjct: 243 FDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLL 302

Query: 305 LKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD----------- 340
             +     S +++S            + +  K      D+      E D           
Sbjct: 303 TIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFARV 362

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           H IS+  G G+  L + IK   +   +K+  S+ +    + 
Sbjct: 363 HFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMA 403



 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 15/196 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L ++ AD++L L +  +            +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
                + D   + F   GL E+     S      + +   +      + +  +  R  E 
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEE 180

Query: 393 ASLNEKDCGLDIIAEN 408
              +E +   D  +E 
Sbjct: 181 VQ-DEWEQEFDFDSEE 195


>gi|323703070|ref|ZP_08114725.1| ribosome-associated GTPase EngA [Desulfotomaculum nigrificans DSM
           574]
 gi|323531964|gb|EGB21848.1| ribosome-associated GTPase EngA [Desulfotomaculum nigrificans DSM
           574]
          Length = 442

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 16/183 (8%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D    S+ E LN    L +++   + + +      +  +I ++G  N GKSSL NA+  +
Sbjct: 141 DPIPISAAEGLNTG-DLLDELVKLLPEQEEDPYPPDTIRIAVIGRPNVGKSSLVNAILGE 199

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENA 299
           +  IV++IPGTTRD +    +  G    I DTAG+R  + I    E+  + R    ++  
Sbjct: 200 ERVIVSNIPGTTRDAIDSPFERNGKSYVIVDTAGMRRRNRIDLPAERYSVVRALRAIDRC 259

Query: 300 DLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           D+ L+L +               +  K    I +  K DL     E+ D  ++ F  +  
Sbjct: 260 DVALMLLDATEGVTEQDKRIVGYAHEKGKAIILVVNKWDLI----EKDDKTMNKFEKKIR 315

Query: 352 EEL 354
           EEL
Sbjct: 316 EEL 318



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 18/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS LFN +    +AIV D+PG TRD L  D + +G    + DT G+   +
Sbjct: 6   VAIVGRPNVGKSMLFNRIVGSRIAIVEDMPGVTRDRLYQDAEWQGREFTLVDTGGLDFAE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           D++  +  K+  L +  AD ++ + +  +          ++    +   +    K + + 
Sbjct: 66  DVITSQIRKQAELAMREADAVIFVVDARAGLTTTDEEVAKVLRLTDKPVLLAANKVEQFD 125

Query: 334 TYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKK 368
                Y             IS+  G    +L++++  +L  + + 
Sbjct: 126 LAKIPYYDFYRLGLGDPIPISAAEGLNTGDLLDELVKLLPEQEED 170


>gi|329897033|ref|ZP_08271805.1| GTP-binding protein EngA [gamma proteobacterium IMCC3088]
 gi|328921473|gb|EGG28859.1| GTP-binding protein EngA [gamma proteobacterium IMCC3088]
          Length = 463

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/297 (19%), Positives = 116/297 (39%), Gaps = 40/297 (13%)

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           ENG    +  +S+A    ++  +    +  G++G    L      +       +   +D 
Sbjct: 64  ENGIDLPMAQQSMAAADEADIVLLILDARAGLTGVDQELVSLLRRQSIPFHVVVN-KIDG 122

Query: 179 SEEEDVQ--------NFSSKEVLNDILFLKNDISSHISQGKLGEIIRN----GYKIVILG 226
              +           +   +   +    +++ I   ++     EI       G K+ I+G
Sbjct: 123 MNSDTAMGDFYSLGIDPLYRIAASHNRGVRSMIEEVLAPFPEDEITAEEQAHGIKVAIVG 182

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-- 284
             N GKS+L N +  ++  +V D PGTTRD + ID + EG    + DTAG+R   ++   
Sbjct: 183 RPNVGKSTLVNRMLGEERVVVYDHPGTTRDSVYIDFEREGEQYTLIDTAGVRRRKNVKES 242

Query: 285 -EKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNID-----FIFIGTKSDLYSTY 335
            EK  I +T   +++++++LLL + +     +++    +        + +  K D    Y
Sbjct: 243 VEKFSIVKTLKAIDDSNVVLLLMDAHEGIVDQDMHLLGHCIEAGRALVVVVNKWDGLDDY 302

Query: 336 TEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            ++                  H IS+  G G+  L   I +      +KL  +  + 
Sbjct: 303 QKDRIKDSISRRLKFVEFAQMHFISALHGSGVGHLYQAIHTAYLAATQKLSTNYLTR 359



 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D  G TRD    +  +      + DT GI   +
Sbjct: 5   IALMGRPNVGKSTLFNQLTRSRDALVADFSGLTRDRKYGEGKVGERPYVVIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD 330
           + ++    +++    + AD++LL+ +  +           +   ++I F  +  K D
Sbjct: 65  NGIDLPMAQQSMAAADEADIVLLILDARAGLTGVDQELVSLLRRQSIPFHVVVNKID 121


>gi|320157270|ref|YP_004189649.1| GTP-binding protein EngA [Vibrio vulnificus MO6-24/O]
 gi|319932582|gb|ADV87446.1| GTP-binding protein EngA [Vibrio vulnificus MO6-24/O]
          Length = 496

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 121/284 (42%), Gaps = 38/284 (13%)

Query: 121 GKIDLLEAESL-ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            K+D ++A++  AD      +   +++     G +++L  + +D          ++ +  
Sbjct: 118 NKVDGIDADAASADFWQLGVDEMYQIAAAHGRG-VTALIERALDPFFDNLLSANSEGEIE 176

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +  ++++  +++        +  +     Q           K+ I+G  N GKS+L N +
Sbjct: 177 DLTNMEDEEAEQQEYSEEDAEESLKRLQDQ---------PIKLAIIGRPNVGKSTLTNRI 227

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEV 296
             ++  +V D+PGTTRD + I ++ +G    + DTAG+R   +  + VEK  + +T   V
Sbjct: 228 LGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRGKVHETVEKFSVVKTLKAV 287

Query: 297 ENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD-----LYSTYTEEYD--- 340
           E+A+++LL+ +     S +++S            +    K D     +     +E D   
Sbjct: 288 EDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWDGLDNEVKENVKKELDRRL 347

Query: 341 --------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                   H IS+  G G+  L   ++    +   ++  S+ + 
Sbjct: 348 GFVDFARIHFISALHGTGVGHLFESVQEAYRSATTRVGTSVLTR 391



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       +  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNID-----FIFIGTKSDLYS 333
           + VE +  +++   +  AD++L + +  +     + +   ++       + +  K D   
Sbjct: 65  EGVETKMAEQSLAAIREADVVLFMVDGRAGLTPSDEAIAAHLRKIEKATMLVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINK 357
                 D            ++  G G+  LI +
Sbjct: 125 ADAASADFWQLGVDEMYQIAAAHGRGVTALIER 157


>gi|309972741|gb|ADO95942.1| GTP-binding protein EngA [Haemophilus influenzae R2846]
          Length = 504

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 116/283 (40%), Gaps = 35/283 (12%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++       +     E ++        Q ++++    +    + D ++    +  
Sbjct: 123 DGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEEEQ 182

Query: 188 SSKEVLNDILFLKND--ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              E   D    ++   I   + +    E  +N  KI I+G  N GKS+L N +  +D  
Sbjct: 183 DEWEQEFDFDSEEDTALIDDALDEEFEEEQDKN-IKIAIVGRPNVGKSTLTNRILGEDRV 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLI 302
           +V D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   +++A+++
Sbjct: 242 VVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVV 301

Query: 303 LLLKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD--------- 340
           LL  +     S +++S            + +  K      D+      E D         
Sbjct: 302 LLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFA 361

Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
             H IS+  G G+  L + IK   +   +K+  S+ +    + 
Sbjct: 362 RVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMA 404



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L ++ AD++L L +  +            +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELIN 356
                + D   + F   GL E+  
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQ 144


>gi|145635317|ref|ZP_01791020.1| GTP-binding protein EngA [Haemophilus influenzae PittAA]
 gi|145267461|gb|EDK07462.1| GTP-binding protein EngA [Haemophilus influenzae PittAA]
          Length = 504

 Score =  124 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 116/283 (40%), Gaps = 35/283 (12%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++       +     E ++        Q ++++    +    + D ++    +  
Sbjct: 123 DGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEEEQ 182

Query: 188 SSKEVLNDILFLKND--ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              E   D    ++   I   + +    E  +N  KI I+G  N GKS+L N +  +D  
Sbjct: 183 DEWEQEFDFDSEEDTALIDDALDEEFEEEQDKN-IKIAIVGRPNVGKSTLTNRILGEDRV 241

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLI 302
           +V D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   +++A+++
Sbjct: 242 VVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVV 301

Query: 303 LLLKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD--------- 340
           LL  +     S +++S            + +  K      D+      E D         
Sbjct: 302 LLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFA 361

Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
             H IS+  G G+  L + IK   +   +K+  S+ +    + 
Sbjct: 362 RVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMA 404



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L ++ AD++L L +  +            +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELIN 356
                + D   + F   GL E+  
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQ 144


>gi|156932946|ref|YP_001436862.1| GTP-binding protein EngA [Cronobacter sakazakii ATCC BAA-894]
 gi|166198713|sp|A7MGU7|DER_ENTS8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|156531200|gb|ABU76026.1| hypothetical protein ESA_00749 [Cronobacter sakazakii ATCC BAA-894]
          Length = 492

 Score =  124 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 32/239 (13%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L H+      D+D  EE D +     +   +       +          ++     K+ I
Sbjct: 155 LEHVLVPWMDDVDPPEEVDEEAEYWAQFEAEQNG--ELVEEEEDDFNPQDL---PIKLAI 209

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--- 281
           +G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+     
Sbjct: 210 VGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREFVLIDTAGVRKRGKIT 269

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD-LY 332
           D+VEK  + +T   +E+A+++LL+ +     S +++S            + +  K D L 
Sbjct: 270 DVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLS 329

Query: 333 STYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
               EE                 H IS+  G G+  L   ++    +  +++  ++ + 
Sbjct: 330 QEVKEEVKETLDYRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTALLTR 388



 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 22/202 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTK----- 328
           + VE    +++ L +E AD++L + +  +     + +  K+          +  K     
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSRQKPTFLVANKTDGLD 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                SD YS    E  H I++  G G+  L+  +  ++       P      +   +  
Sbjct: 125 PDQAVSDFYSLGLGEI-HPIAASHGRGVTSLLEHV--LVPWMDDVDPPEEVDEEAEYWAQ 181

Query: 384 SQTVRYLEMASLNEKDC-GLDI 404
            +  +  E+    E D    D+
Sbjct: 182 FEAEQNGELVEEEEDDFNPQDL 203


>gi|237836819|ref|XP_002367707.1| hypothetical protein TGME49_004350 [Toxoplasma gondii ME49]
 gi|211965371|gb|EEB00567.1| hypothetical protein TGME49_004350 [Toxoplasma gondii ME49]
          Length = 990

 Score =  124 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/194 (34%), Positives = 107/194 (55%), Gaps = 10/194 (5%)

Query: 99  LAKMPNLRLANPGEFSRRAFENGKID-LLEAESLADLISSETEMQRRLSMEGMSGELS-- 155
           L+ + +LR A  GEF+ RAF NGKI+ + + E+LADL++++T  Q RL++  +       
Sbjct: 382 LSSVGDLRPAEAGEFTLRAFLNGKIESVQQVEALADLLNADTVAQHRLALRRLRRHPREL 441

Query: 156 -SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS------SKEVLNDILFLKNDISSHIS 208
             L  +W   L    +F EA L+  ++    +        +++    +  L  ++   + 
Sbjct: 442 RDLLERWRKLLQEALAFSEAALEIGDDAQEADAELARACGAQDAEKRVRRLLQELRCQLE 501

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
            G    +++ G  +V  G +NAGKS+LFN+L  +D AIV+ I GTTRDVLT  + L G  
Sbjct: 502 LGMRDALVQTGVTVVFCGPTNAGKSTLFNSLVGRDTAIVSPIAGTTRDVLTAPIQLSGSK 561

Query: 269 VKISDTAGIRETDD 282
           V ++DTAG+R   D
Sbjct: 562 VLLTDTAGLRPARD 575



 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 17/77 (22%)

Query: 6   ETIFAVST-----GALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
           +T++A+S+        PSA+++ R+SGP    V   +  K      + +           
Sbjct: 45  DTVYALSSGGAGHAFSPSAVAVWRVSGPLAHAVMLLLMAKPANSEERKT----------- 93

Query: 61  LDKGLLIVFPSPESFTG 77
            + G+   +P P++  G
Sbjct: 94  -NDGVASPYPGPQTEQG 109


>gi|221483862|gb|EEE22166.1| GTPase mss1/trme, putative [Toxoplasma gondii GT1]
          Length = 981

 Score =  124 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/194 (34%), Positives = 107/194 (55%), Gaps = 10/194 (5%)

Query: 99  LAKMPNLRLANPGEFSRRAFENGKID-LLEAESLADLISSETEMQRRLSMEGMSGELS-- 155
           L+ + +LR A  GEF+ RAF NGKI+ + + E+LADL++++T  Q RL++  +       
Sbjct: 373 LSSVGDLRPAEAGEFTLRAFLNGKIESVQQVEALADLLNADTVAQHRLALRRLRRHPREL 432

Query: 156 -SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS------SKEVLNDILFLKNDISSHIS 208
             L  +W   L    +F EA L+  ++    +        +++    +  L  ++   + 
Sbjct: 433 RDLLERWRKLLQEALAFSEAALEIGDDAQEADAELARACGAQDAEKRVRRLLQELRCQLE 492

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
            G    +++ G  +V  G +NAGKS+LFN+L  +D AIV+ I GTTRDVLT  + L G  
Sbjct: 493 LGMRDALVQTGVTVVFCGPTNAGKSTLFNSLVGRDTAIVSPIAGTTRDVLTAPIQLSGSK 552

Query: 269 VKISDTAGIRETDD 282
           V ++DTAG+R   D
Sbjct: 553 VLLTDTAGLRPARD 566



 Score = 39.9 bits (92), Expect = 0.92,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 6  ETIFAVST-----GALPSAISIIRLSGPSCFQVCEFI-CKKKKPFPRK 47
          +T++A+S+        PSA+++ R+SGP    V   +  K      RK
Sbjct: 45 DTVYALSSGGAGHAFSPSAVAVWRVSGPLAHAVMLLLMAKPANSEERK 92


>gi|163848650|ref|YP_001636694.1| GTP-binding protein EngA [Chloroflexus aurantiacus J-10-fl]
 gi|222526586|ref|YP_002571057.1| GTP-binding protein EngA [Chloroflexus sp. Y-400-fl]
 gi|189037140|sp|A9WHH9|DER_CHLAA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783145|sp|B9LBT6|DER_CHLSY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|163669939|gb|ABY36305.1| small GTP-binding protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450465|gb|ACM54731.1| small GTP-binding protein [Chloroflexus sp. Y-400-fl]
          Length = 449

 Score =  124 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/305 (18%), Positives = 115/305 (37%), Gaps = 30/305 (9%)

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEM-QRRLSMEGMSGELSSLYGQWIDKLTHIR 169
            E +RR     +  + EA+++  ++     +      +  +    S      ++K     
Sbjct: 73  AEIARRTRAQAEHAIAEADAIIFIVDGRDGLTAADSDVADVLRTTSKPVVLAVNKCDSQE 132

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
             ++A   ++         S         + + ++ ++      +      +I I+G  N
Sbjct: 133 RMLDAVEFYALNLGEPIPMSAFHGLGTGDVLDRLTEYLPPKTFTQEEERHLRIAIVGRPN 192

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEK 286
            GKSSL N L  ++ ++V+ IPGTTRD +   +   G  + + DTAGIR   + +  +EK
Sbjct: 193 VGKSSLLNRLLGQERSVVSSIPGTTRDPIDTTITYHGEPITLIDTAGIRRAGKIERGIEK 252

Query: 287 EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEE 338
             + RT   +E  D+ LLL +              +        I +  K D     +  
Sbjct: 253 YSVLRTLRAIERCDVALLLIDATEGVTAQDTHIAGMVVEAKKGLILVVNKWDAIEKDSHT 312

Query: 339 Y------------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           Y                     +S+ TG+ +  L++  + +   + K++P S  ++    
Sbjct: 313 YYAFQDQVREAFKFVDYAPIVFVSALTGQRVSHLLDYAREVYVQRQKRVPTSELNNFLRE 372

Query: 381 YHLSQ 385
             L Q
Sbjct: 373 VMLQQ 377



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 29/184 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---R 278
           + I+G  N GKS+ FN L  +  AIV D+PGTTRD L  D    G    + DTAG+    
Sbjct: 6   VAIVGRPNVGKSTFFNRLIGERRAIVEDLPGTTRDRLYGDTFWNGREFTVVDTAGVLFGG 65

Query: 279 ETDDIVEKEGIKRTFL----EVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
           E  ++ E E  +RT       +  AD I+ + +             ++    +   +   
Sbjct: 66  EDPNLPEAEIARRTRAQAEHAIAEADAIIFIVDGRDGLTAADSDVADVLRTTSKPVVLAV 125

Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            K D      +  +           +S+F G G  ++++++   L  K           +
Sbjct: 126 NKCDSQERMLDAVEFYALNLGEPIPMSAFHGLGTGDVLDRLTEYLPPKTFTQEE-----E 180

Query: 378 RHLY 381
           RHL 
Sbjct: 181 RHLR 184


>gi|221505148|gb|EEE30802.1| GTP-binding protein enga, putative [Toxoplasma gondii VEG]
          Length = 990

 Score =  124 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/194 (34%), Positives = 107/194 (55%), Gaps = 10/194 (5%)

Query: 99  LAKMPNLRLANPGEFSRRAFENGKID-LLEAESLADLISSETEMQRRLSMEGMSGELS-- 155
           L+ + +LR A  GEF+ RAF NGKI+ + + E+LADL++++T  Q RL++  +       
Sbjct: 382 LSSVGDLRPAEAGEFTLRAFLNGKIESVQQVEALADLLNADTVAQHRLALRRLRRHPREL 441

Query: 156 -SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS------SKEVLNDILFLKNDISSHIS 208
             L  +W   L    +F EA L+  ++    +        +++    +  L  ++   + 
Sbjct: 442 RDLLERWRKLLQEALAFSEAALEIGDDAQEADAELARACGAQDAEKRVRRLLQELRCQLE 501

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
            G    +++ G  +V  G +NAGKS+LFN+L  +D AIV+ I GTTRDVLT  + L G  
Sbjct: 502 LGMRDALVQTGVTVVFCGPTNAGKSTLFNSLVGRDTAIVSPIAGTTRDVLTAPIQLSGSK 561

Query: 269 VKISDTAGIRETDD 282
           V ++DTAG+R   D
Sbjct: 562 VLLTDTAGLRPARD 575



 Score = 39.9 bits (92), Expect = 0.93,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 6  ETIFAVST-----GALPSAISIIRLSGPSCFQVCEFI-CKKKKPFPRK 47
          +T++A+S+        PSA+++ R+SGP    V   +  K      RK
Sbjct: 45 DTVYALSSGGAGHAFSPSAVAVWRVSGPLAHAVMLLLMAKPANSEERK 92


>gi|188997363|ref|YP_001931614.1| small GTP-binding protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|229807528|sp|B2V5W6|DER_SULSY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|188932430|gb|ACD67060.1| small GTP-binding protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 445

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 110/278 (39%), Gaps = 46/278 (16%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL-----------FLKND 202
           L       + +           +D  E+E +     +    +I+            L + 
Sbjct: 98  LDKEIANILHRTEKPVIVAVNKIDDPEKEKLAYEFYELGFENIIPISAIQKLGLAELLDK 157

Query: 203 ISSHISQGKLGEII-------RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +  +I + +            R+  K+ I+G  NAGKSSL NAL  ++  +V++IPGTTR
Sbjct: 158 VVEYIPEYEKEIQEEEEKEEKRDYIKVAIVGKPNAGKSSLINALLNEERVLVSEIPGTTR 217

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK- 311
           D + I  + +G      DTAG+R+   +    E   + RT   +E AD+++L+ + N   
Sbjct: 218 DTVDILYEKDGQKFLFLDTAGMRKKSKVDFGLEFFSVGRTIEAIEKADVVVLVIDANQGA 277

Query: 312 -------KEISFPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTG 348
                    +   +    + +  K D     T E                     S+ T 
Sbjct: 278 TEQDTKIAGLIQRRYKPAVIVINKIDTVDKKTLEKVEKQVRERLYFISYAPIVFTSAKTK 337

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQ 385
           EGL+EL+ KI  + +  +K++     +   + + +L Q
Sbjct: 338 EGLDELLEKIVYVYNQAWKRVGTGQLNRAIKQIQNLRQ 375



 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 18/162 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IR 278
           +++ I+G  N GKSSLFN +  +  AIV DIPG TRD +    +  G   ++ DT G I 
Sbjct: 2   FRVAIVGIPNVGKSSLFNRIIGQRKAIVEDIPGVTRDRIVSTAEWRGVKFEVVDTGGYIT 61

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             +D       K+   E+E +DL + + +              I        I    K D
Sbjct: 62  GDEDKFAPYIRKQVEKELELSDLFIFVVDGKQGLTPLDKEIANILHRTEKPVIVAVNKID 121

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
                   Y+           IS+    GL EL++K+   + 
Sbjct: 122 DPEKEKLAYEFYELGFENIIPISAIQKLGLAELLDKVVEYIP 163


>gi|152975027|ref|YP_001374544.1| GTP-binding protein EngA [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189037136|sp|A7GN41|DER_BACCN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|152023779|gb|ABS21549.1| small GTP-binding protein [Bacillus cytotoxicus NVH 391-98]
          Length = 436

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 93/226 (41%), Gaps = 26/226 (11%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   +     L++  +         +  +++    +     L F 
Sbjct: 91  NGRDGVTAADEEVAKILYRSNKPVVLAVNKVDNP------EMRNEIYDFYA-----LGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   +    L D   L ++++ H  + +  E      +  ++G  N GKSSL NAL
Sbjct: 140 EPFPISG-THGLGLGD---LLDEVAQHFPKVEEEEYDDETIRFCLIGRPNVGKSSLVNAL 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+++ GTTRD +      +G    I DTAG+R+   +    EK  + R    +
Sbjct: 196 LGQERVIVSNVAGTTRDAVDTPYTKDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAI 255

Query: 297 ENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST 334
           E +D++L++ +     I   K+I   +       + +  K D    
Sbjct: 256 ERSDVVLVVLDGEEGIIEQDKKIAGYAHDSGRAVVIVVNKWDAVKK 301



 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + +  E    I +  N   +    K D   
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSNKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
              E YD           IS   G GL +L++++     
Sbjct: 126 MRNEIYDFYALGFGEPFPISGTHGLGLGDLLDEVAQHFP 164


>gi|226357377|ref|YP_002787117.1| GTP-binding protein EngA [Deinococcus deserti VCD115]
 gi|259645869|sp|C1D094|DER_DEIDV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226319367|gb|ACO47363.1| putative GTP-binding protein [Deinococcus deserti VCD115]
          Length = 441

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 99/265 (37%), Gaps = 35/265 (13%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDV-----------QNFSSKEVLNDILFLKNDISSH 206
              W+ ++      +   +D  + E                 S E    +  L + + +H
Sbjct: 100 VADWLRRVGKPVIVVANKIDSPKHEVYLAELWGLGFGDPVAISAEHARGLDELLDRVMTH 159

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +             +I ++G  N GKSSL NA+   D AIV D PGTTRD L ++ D  G
Sbjct: 160 LPADDEDVPEVAPIRISLIGRPNVGKSSLLNAITNTDRAIVADQPGTTRDSLDVEWDFGG 219

Query: 267 YLVKISDTAGIRETDD-IVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPK 318
               + DTAGIR+  D  +E   I+R+   ++ +DLI L+               +++  
Sbjct: 220 QRFVLVDTAGIRKKPDTAIEDYAIQRSQAAIQRSDLIWLVVNATDMGDHELKLANLAYES 279

Query: 319 NIDFIFIGTKSDLYST----------------YTEEYDHLISSFTGEGLEELINKIKSIL 362
               I +  K DL                    +       S+    G+ E++ +   + 
Sbjct: 280 GKPVIVVVNKWDLVPDEELKRTEKDLNQKLHHISFAPRVYTSAINDYGIHEMLAEAMKLH 339

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTV 387
                ++P S  +    ++ + Q V
Sbjct: 340 DKWQSRIPTSELNRWLEVWQMRQAV 364



 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 18/173 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSLFN L  +  A+V D PG TRD     +    + + + DT G+  +
Sbjct: 3   KVAIVGRPNVGKSSLFNRLIGRREAVVADFPGVTRDAKEGLMLYHNHRITLVDTGGL-WS 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D  E    ++    +E A  ++ + +             +         I +  K D  
Sbjct: 62  GDEWEAAIREKAEWAMEGAQAVVFVLDPREGLSAADYEVADWLRRVGKPVIVVANKIDSP 121

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                L   +   +     IS+    GL+EL++++ + L    + +P   P  
Sbjct: 122 KHEVYLAELWGLGFGDPVAISAEHARGLDELLDRVMTHLPADDEDVPEVAPIR 174


>gi|269103271|ref|ZP_06155968.1| GTP-binding protein EngA [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163169|gb|EEZ41665.1| GTP-binding protein EngA [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 499

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/285 (21%), Positives = 120/285 (42%), Gaps = 37/285 (12%)

Query: 121 GKIDLLEAE-SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            KID ++A+ + AD      +   +++     G         +++          ++  S
Sbjct: 118 NKIDGIDADSACADFWKLGADEMHQIAASQNRG-----VTALMERALEP---FFENISGS 169

Query: 180 EEEDVQNFSSKEVLNDILFLKND-ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +EE   +  S E LN +  ++N  +S   ++     +     K+ I+G  N GKS+L N 
Sbjct: 170 DEELESDEISIEDLNSVAEIENANLSEQDAEAAYKRLQEQPIKLAIIGRPNVGKSTLTNR 229

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLE 295
           +  ++  +V D+PGTTRD + I ++ +G    + DTAGIR   ++    EK  + +T   
Sbjct: 230 ILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRRKNMHEAVEKFSVIQTLKA 289

Query: 296 VENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEE--------- 338
           VE+A+++LL+ +     S +++S            +    K D      +E         
Sbjct: 290 VEDANVVLLIIDARENISDQDLSLLGFALNAGRSLVIAVNKWDGLDNDVKERVKTELDRR 349

Query: 339 -------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                    H IS+  G G+  L   +     +  K++  S+ + 
Sbjct: 350 LGFVDFARIHFISALHGTGVGHLYESVVEAYQSATKRISTSMLTR 394



 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 18/196 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEINEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYS 333
           + VE +  +++ + +E AD++L L +  +    +          +N     +  K D   
Sbjct: 65  EGVETKMAEQSLMAIEEADVVLFLVDGRAGLTAADEAIAKHLRSRNKPTFLVVNKIDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             +   D         H I++    G+  L+ +               + S +  +  L 
Sbjct: 125 ADSACADFWKLGADEMHQIAASQNRGVTALMERALEPFFENISGSDEELESDEISIEDL- 183

Query: 385 QTVRYLEMASLNEKDC 400
            +V  +E A+L+E+D 
Sbjct: 184 NSVAEIENANLSEQDA 199


>gi|323706096|ref|ZP_08117665.1| ribosome-associated GTPase EngA [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534540|gb|EGB24322.1| ribosome-associated GTPase EngA [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 439

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 30/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  +I    + E      KI  +G  N GKSSL N +  ++ AIV+DIPGTTRD 
Sbjct: 156 DLLDEVIENIPD-HIDEYDEETIKISFIGKPNVGKSSLVNKILGEERAIVSDIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKK-- 312
           L    + +     I DTAG+R+    +D +E+  + R    ++ +D+ +L+ +       
Sbjct: 215 LDTYFEKDDRKYVIIDTAGMRKKGRIEDKIERYSVLRALAAIDRSDICILVIDATEGPTE 274

Query: 313 ------EISFPKNIDFIFIGTKSDLYST-----------YTEEYDHL-------ISSFTG 348
                   +F +N   I    K DL                E++  +       IS+ TG
Sbjct: 275 QDTKIAGYAFEQNKAMIIAVNKWDLIEKDNSTVNEYTKLIREKFSFMSFAPITYISAKTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSH 376
           + L +L   I S+     K++     ++
Sbjct: 335 QRLNKLFELINSVWGEYNKRISTGTLNN 362



 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 71/172 (41%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +  + ++IV D PG TRD +  + +       + DT G+  ++
Sbjct: 6   VGIVGRPNVGKSTLFNKITGQRISIVEDQPGVTRDRIYFETEWMDKRFILVDTGGLEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLY 332
           +D    +   +    ++  DLIL + +         ++I+          + +  K D +
Sbjct: 66  EDEFFSKIKMQVEAALKTVDLILFVIDGKEGVSPVDEDIAAMLRKSRKKVLLVLNKVDNF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                 Y             IS+  G G+ +L++++   + +   +      
Sbjct: 126 KEMPISYYDSMRLGFGEPIAISASNGLGIGDLLDEVIENIPDHIDEYDEETI 177


>gi|226324619|ref|ZP_03800137.1| hypothetical protein COPCOM_02403 [Coprococcus comes ATCC 27758]
 gi|225207067|gb|EEG89421.1| hypothetical protein COPCOM_02403 [Coprococcus comes ATCC 27758]
          Length = 442

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + + ++  +G   E   +  ++ I+G  N GKSS+ N L  KD  IV+DI GTTRD 
Sbjct: 156 DMLDKVLAYFPEGAGQEEEDDRPRVAIVGKPNVGKSSIINRLIGKDRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++   G      DTAG+R  + I    E+  I RT   VE AD++L++ +       
Sbjct: 216 IDTEVVHNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLVVIDAAEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTY---TEEYDH---------------LISSFTG 348
                  I+  +    I +  K D        T EY+H                +S+ TG
Sbjct: 276 QDAKIAGIAHERGKGVIIVVNKWDAIEKNDKTTREYEHQIRMVLSFLPYAEIMYVSALTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + I +++ N+  ++   + +
Sbjct: 336 QRLPKLFDMIDTVIENQTLRVATGVLN 362



 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 77/170 (45%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + +AIV D PG TRD +  +++       + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEKIAIVKDTPGVTRDRIYAEVNWLDKEFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D++  +  ++  + ++ AD+IL + ++            ++    +   I +  K D +
Sbjct: 66  RDVILSQMREQAQIAIDTADVILFMTDVKQGLVDSDSKVADMLRRSHKPVILVVNKVDNF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +    +              IS+    G+ ++++K+ +       +    
Sbjct: 126 NKMMPDVYEFYNLGIGDPVPISASERIGIGDMLDKVLAYFPEGAGQEEED 175


>gi|226939618|ref|YP_002794691.1| GTP-binding protein engA [Laribacter hongkongensis HLHK9]
 gi|226714544|gb|ACO73682.1| GTP-binding protein engA [Laribacter hongkongensis HLHK9]
          Length = 415

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 114/292 (39%), Gaps = 37/292 (12%)

Query: 127 EAESLADLISSE---TEMQRRLS--MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           EA+++  L+ +    T   + ++  +  +   +  +  +        R+ + A+  +   
Sbjct: 39  EADAVIFLVDARAGLTPQDKIIANQLRQIGRPVFLVVNKAEGM---SRAMVVAEF-YELG 94

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D     S      +  L +++ +        E  R+  K  I+G  N GKS+L NA+  
Sbjct: 95  LDEPWSISGAHGEGVRELMDEVLAPFPDESEEETSRH-PKFAIIGRPNVGKSTLVNAILG 153

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVEN 298
           ++  I  D PGTTRD + ID + EG    I DTAG+R   + D+ +EK  + +T   +E+
Sbjct: 154 EERVIAFDHPGTTRDSIYIDFEREGKTYTIIDTAGVRRRAKIDESIEKFSVVKTLQAIED 213

Query: 299 ADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD---------LYSTYTEEYD- 340
           A++ +L+ +          +    +       +    K D         +  +   +   
Sbjct: 214 ANVCVLVLDAALDVSDQDATLAGFALEAGRALVVAVNKWDDCDEEQRINIKRSIARKLHF 273

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
                 H IS+  G+G+ +L   I         K+P    +    +    Q 
Sbjct: 274 LEFAKYHYISALKGQGVADLFKSIDQAYHAAMIKMPTPKLTRALQVAIERQA 325



 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 18/123 (14%)

Query: 265 EGYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-- 318
            G    + DT G     D  +  E  ++T   V+ AD ++ L +  +    ++       
Sbjct: 5   GGKPYLVVDTGGFEPVVDSGIMHEMARQTLQAVDEADAVIFLVDARAGLTPQDKIIANQL 64

Query: 319 ---NIDFIFIGTKSD-------LYSTYTEEYDHLISS--FTGEGLEELINKIKSILSNKF 366
                    +  K++       +   Y    D   S     GEG+ EL++++ +   ++ 
Sbjct: 65  RQIGRPVFLVVNKAEGMSRAMVVAEFYELGLDEPWSISGAHGEGVRELMDEVLAPFPDES 124

Query: 367 KKL 369
           ++ 
Sbjct: 125 EEE 127


>gi|90410877|ref|ZP_01218891.1| GTP-binding protein EngA [Photobacterium profundum 3TCK]
 gi|90328090|gb|EAS44401.1| GTP-binding protein EngA [Photobacterium profundum 3TCK]
          Length = 493

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 110/276 (39%), Gaps = 40/276 (14%)

Query: 133 DLISSETEMQRRL-----SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++           +M  ++   +      +++     +    D D     D+ + 
Sbjct: 121 DGIDADSACAEFWKLGVDAMYQVAAAHNRGVTALMERALAPFAESLKDNDEEGLIDLTSV 180

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
              E        K D++   ++     +     K+ I+G  N GKS+L N +  ++  +V
Sbjct: 181 EDIE--------KADLTEEDAEAAYKRLQEQPIKLAIIGRPNVGKSTLTNRILGEERVVV 232

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILL 304
            D+PGTTRD + I ++ +G    + DTAG+R   ++    EK  + +T   VE+A+++LL
Sbjct: 233 YDMPGTTRDSIYIPMERDGQEYVLIDTAGVRRRKNMNQAVEKFSVIQTLKAVEDANVVLL 292

Query: 305 LKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEE----------------YD 340
           + +     S +++S            +    K D      +E                  
Sbjct: 293 IIDARENISDQDLSLLGFVLNSGRSLVLAVNKWDGLDNEVKERVKSELDRRLGFIDFARI 352

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           H IS+  G G+  L + +     +  K++  S+ + 
Sbjct: 353 HFISALHGTGVGHLYDSVIEAYQSATKRISTSLLTR 388



 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 17/192 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      +LE +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYS 333
           + VE +  +++   +E AD++L L +  +   +S          +      +  K D   
Sbjct: 65  EGVETKMAEQSLAAIEEADVVLFLVDGRAGLTVSDEAIAKHLRSREKPTFLVVNKIDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             +   +            ++    G+  L+ +  +  +   K            +  + 
Sbjct: 125 ADSACAEFWKLGVDAMYQVAAAHNRGVTALMERALAPFAESLKDNDEEGLIDLTSVEDIE 184

Query: 385 QTVRYLEMASLN 396
           +     E A   
Sbjct: 185 KADLTEEDAEAA 196


>gi|16330798|ref|NP_441526.1| GTP-binding protein EngA [Synechocystis sp. PCC 6803]
 gi|8928101|sp|P74120|DER_SYNY3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|1653291|dbj|BAA18206.1| slr1974 [Synechocystis sp. PCC 6803]
          Length = 452

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 12/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  ++      E   +  K+ I+G  N GKSSL NAL  +  AIV+ I GTTRD 
Sbjct: 156 DLLDALLEYLP-APQEEPEEDEIKVAIVGRPNVGKSSLLNALTGEQRAIVSPISGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI---NSK 311
           + + ++  G   ++ DTAGIR     D   E  GI R F  +  AD++L + ++    ++
Sbjct: 215 IDMVVERNGQKYRLIDTAGIRRKKNVDYGAEFFGINRAFKAIRRADVVLFVLDVLDGVTE 274

Query: 312 KEISFP-----KNIDFIFIGTKSDLYST 334
           +++             + +  K D    
Sbjct: 275 QDLKLAGRIIEDGRAVVLVINKWDAVEK 302



 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N LA    AIV D PG TRD             ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTFVNRLAGNQQAIVHDQPGITRDRTYRPAFWRDRDFQVVDTGGLVFND 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIG--TKS--- 329
           D     E  ++  L +  A   + + +       + ++   + +      I    K    
Sbjct: 66  DSEFLPEIREQANLALAEAKAAIFVVDGQQGPTASDEEIAQWLRQQSVPVILAVNKCESP 125

Query: 330 DLYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D  +    E+ H        +S+  G G  +L++ +   L    ++    
Sbjct: 126 DQGAIQAAEFWHLGLGEPYPMSAIHGSGTGDLLDALLEYLPAPQEEPEED 175


>gi|94986202|ref|YP_605566.1| GTP-binding protein EngA [Deinococcus geothermalis DSM 11300]
 gi|166198711|sp|Q1IWI7|DER_DEIGD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|94556483|gb|ABF46397.1| Small GTP-binding protein domain [Deinococcus geothermalis DSM
           11300]
          Length = 441

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 101/265 (38%), Gaps = 35/265 (13%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDV-----------QNFSSKEVLNDILFLKNDISSH 206
              W+ +L          +D  + +                 S E    +  L   + +H
Sbjct: 100 VADWLRRLGKPVIVAANKIDSPKHDVYLAELWGLGFGDPVAISAEHARGLDDLMERVMAH 159

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +   +         +I ++G  N GKSSL NA+ + + AIV D PGTTRD L ++ +  G
Sbjct: 160 LPADEEDVPEVAPIRISLIGRPNVGKSSLLNAITQSERAIVADQPGTTRDSLDVEWNYGG 219

Query: 267 YLVKISDTAGIRETDD-IVEKEGIKRTFLEVENADLILLLKEINSKKE-------ISFPK 318
               + DTAGIR+  D  +E+  I+R+   +E +D+I L+       +       +++  
Sbjct: 220 QRFVLVDTAGIRKKPDTAIEEYAIQRSEAAIERSDIIWLVVNATEIGDHELKLANLAYDS 279

Query: 319 NIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSIL 362
               I +  K DL      +                     S+    G+ +++ +   + 
Sbjct: 280 GKPVIVVVNKWDLVPDEALKQTEKELNQKLHHIAYAPRVYTSAINDYGIHDMLAEAMKLY 339

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTV 387
                ++P +  +    ++ + Q V
Sbjct: 340 EKWQSRIPTAELNRWLEIWQMRQAV 364



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 18/173 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSLFN L  +  A+V D PG TRD     +    + + + DT G+  +
Sbjct: 3   KVAIVGRPNVGKSSLFNRLVGRREAVVADFPGVTRDAKEGLMLYHNHRIVLVDTGGL-WS 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D  E+   ++    +E A  ++ + +             +         I    K D  
Sbjct: 62  GDEWEQAIREKAEWAMEGAQAVIFVVDPREGLTAADYEVADWLRRLGKPVIVAANKIDSP 121

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                L   +   +     IS+    GL++L+ ++ + L    + +P   P  
Sbjct: 122 KHDVYLAELWGLGFGDPVAISAEHARGLDDLMERVMAHLPADEEDVPEVAPIR 174


>gi|210622342|ref|ZP_03293111.1| hypothetical protein CLOHIR_01059 [Clostridium hiranonis DSM 13275]
 gi|210154330|gb|EEA85336.1| hypothetical protein CLOHIR_01059 [Clostridium hiranonis DSM 13275]
          Length = 441

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 98/260 (37%), Gaps = 38/260 (14%)

Query: 113 FSRRAFENGKIDLLEAESL----ADLISSETEMQRRLSM------------EGMSGELSS 156
           F+   + N    L++   +     D+I S+   Q  L+M            +        
Sbjct: 46  FTEVEWLNKYFTLIDTGGIEPKSDDIIVSQMRNQAMLAMDMAHVILMVVDGKQGITAADR 105

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI-----------LFLKNDISS 205
              + + +       +   +D   + D      +  L +              L ++I +
Sbjct: 106 EIAETLRRTNKPVILVVNKIDSMSQYDNVYDFYELGLGEPFAISGANSMGLGDLLDEIVA 165

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           +  +G   EI  +  K+ I G  NAGKSS+ N +  +D  IV+ I GTTRD +    +  
Sbjct: 166 NFPEGLNTEIDEDTIKVAITGKPNAGKSSILNNILGEDRVIVSPIAGTTRDAVDTYFEKN 225

Query: 266 GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEI 314
           G    + DTAG+R    +    EK  + R    V+ AD++L++ +              I
Sbjct: 226 GQNYLLIDTAGLRRKSKVYESVEKYSVIRAMSAVDRADVVLIVIDAQEGVTEQDTKVAGI 285

Query: 315 SFPKNIDFIFIGTKSDLYST 334
           +  +    IF+  K DL   
Sbjct: 286 AHDEGKACIFVINKWDLIEK 305



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 18/170 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   + ++G  N GKS++FN  A + ++IV D PG TRD +  +++       + DT GI
Sbjct: 5   NRPIVAVVGRPNVGKSTIFNKFAGRRISIVEDTPGVTRDRIFTEVEWLNKYFTLIDTGGI 64

Query: 278 R-ETDDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTK 328
             ++DDI+  +   +  L ++ A +IL++ +       + +EI+      N   I +  K
Sbjct: 65  EPKSDDIIVSQMRNQAMLAMDMAHVILMVVDGKQGITAADREIAETLRRTNKPVILVVNK 124

Query: 329 SDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
            D  S Y   YD           IS     GL +L+++I +         
Sbjct: 125 IDSMSQYDNVYDFYELGLGEPFAISGANSMGLGDLLDEIVANFPEGLNTE 174


>gi|159900085|ref|YP_001546332.1| GTP-binding protein EngA [Herpetosiphon aurantiacus ATCC 23779]
 gi|238687093|sp|A9B567|DER_HERA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|159893124|gb|ABX06204.1| small GTP-binding protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 455

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 11/154 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++I  H+  G+  E   N  KI I+G  N GKSSL N L  ++  +V++IPGTTRD 
Sbjct: 161 DLLDEIVRHLPAGQEEEEDDNSLKIAIVGRPNVGKSSLLNKLVGEERVVVSNIPGTTRDS 220

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKK-- 312
           +   L  +G  + + DTAGIR     +  +E+  + RT   +E   + L+L +       
Sbjct: 221 IDTKLTYKGIPITLIDTAGIRRRGSIEQGIERYSVLRTMKAIERCHIALILVDAQEGPTA 280

Query: 313 ------EISFPKNIDFIFIGTKSDLYSTYTEEYD 340
                  +    N     I  K DL       Y+
Sbjct: 281 QDTHVAGMVLEANKGLAIIVNKWDLIDKAKFSYE 314



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 24/175 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---R 278
           + I+G  N GKS+LFN L  +  AI+ D  GTTRD    +    G +  I DTAG+    
Sbjct: 6   VAIVGRPNVGKSTLFNKLIGERRAIIADEAGTTRDRQYGETIWNGRVFTIVDTAGLLVGD 65

Query: 279 ETDDIVEKEGIKRT----FLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
           +  ++   E ++RT     L ++ AD+I+ + ++             +    +   +   
Sbjct: 66  DDPNLPLAEIVRRTHQQAQLAIDEADVIVFMVDVREGLIAADEEVAALLRRSSKPVVLGV 125

Query: 327 TKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
            K+D         +            S++ G G  +L+++I   L    ++    
Sbjct: 126 NKADTEDRRQNAVEFYNLGLGDPIALSAYHGTGSGDLLDEIVRHLPAGQEEEEDD 180


>gi|262274783|ref|ZP_06052594.1| GTP-binding protein EngA [Grimontia hollisae CIP 101886]
 gi|262221346|gb|EEY72660.1| GTP-binding protein EngA [Grimontia hollisae CIP 101886]
          Length = 501

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 111/265 (41%), Gaps = 36/265 (13%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E   +++     G L +L  + +       +  E D       D+     ++     L  
Sbjct: 138 EEMYQIAAAHGRGVL-ALIDRALKPFAEELAGNEEDDGKEGLVDLTGEQDEDKDEKDLTE 196

Query: 200 KNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++  S+        E +RN   K  I+G  N GKS+L N +  ++  +V D+PGTTRD +
Sbjct: 197 EDAESAL-------ERLRNLPIKFSIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSI 249

Query: 259 TIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKK 312
            I ++ +G    I DTAG+R     +D VEK  + +T   +E+A+++LL+ +     S +
Sbjct: 250 YIPMERDGREYVIIDTAGVRRRKRVNDKVEKFSVVQTLKAIEDANVVLLVIDARENISDQ 309

Query: 313 EISFP-----KNIDFIFIGTK-----SDLYSTYTEEYD-----------HLISSFTGEGL 351
           ++S            +    K     SD+      E D           H IS+  G G+
Sbjct: 310 DLSLLGFALNAGRSIVIAVNKWDGLDSDVKERVKSELDRRLGFVDFARIHFISALHGTGV 369

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
             L   I+    +  +++  S+ + 
Sbjct: 370 GHLFESIQEAYESATRRISTSMLTR 394



 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGKALLGEHEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYS 333
           + VE +  +++   +E AD++L + +  +   ++          +      +  K D   
Sbjct: 65  EGVETKMAEQSLAAIEEADVVLFMVDGRAGLTVADEAIAQHLRSRQKKTFLVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 +            ++  G G+  LI++     + +       
Sbjct: 125 PDAASAEFWQLGMEEMYQIAAAHGRGVLALIDRALKPFAEELAGNEED 172


>gi|89894997|ref|YP_518484.1| hypothetical protein DSY2251 [Desulfitobacterium hafniense Y51]
 gi|122482578|sp|Q24VA2|DER_DESHY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|89334445|dbj|BAE84040.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 441

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 15/168 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++ SH  +    E+  +  +I ++G  N GKSSL N L  ++  IV++IPGTTRD 
Sbjct: 155 DLLDEVVSHFPEDIEEEVDPDTIRIAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +    + EG    I DTAG+R     +++ E+  + R+   V+ +D+IL+L +       
Sbjct: 215 IDSAFEHEGKHYIIIDTAGMRRKGRIEELTEQYSVSRSLRAVDRSDVILMLLDAGEGVTE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
                   +       + +  K DL     E+ D  ++ F  +  EEL
Sbjct: 275 QDKKIAGYAHEAGKGIVLVVNKWDLI----EKDDKTMNRFEKDIREEL 318



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN LA   VAIV + PG TRD L  D +  G    I DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLFNRLAGGLVAIVENRPGVTRDRLYRDSEWLGRKFTIIDTGGIEFVN 65

Query: 282 D--IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGT---- 327
           +   +  +  ++  + +E AD+I+ + +         +   +         I        
Sbjct: 66  ENTPITAQMRRQAEIAIEEADVIVFVIDAQISPTPDDDMIAQTLRRSGKPVILAANKVEN 125

Query: 328 --KSDLYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K++LY  Y         IS+  G  + +L++++ S      ++ 
Sbjct: 126 FAKTELYEFYNLGLGEPVPISAVHGMNIGDLLDEVVSHFPEDIEEE 171


>gi|219850590|ref|YP_002465023.1| GTP-binding protein EngA [Chloroflexus aggregans DSM 9485]
 gi|254783144|sp|B8GAY7|DER_CHLAD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|219544849|gb|ACL26587.1| small GTP-binding protein [Chloroflexus aggregans DSM 9485]
          Length = 449

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 119/296 (40%), Gaps = 30/296 (10%)

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIR 169
            E +RR     +  + EA+++  ++     +    + +  +    +      ++K     
Sbjct: 73  VEIARRTRVQAEHAIAEADAIIFMVDGRDGLTTADADVADILRTTAKPVVLAVNKCDSQE 132

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
             ++A   ++         S         + + ++ +       +      ++ I+G  N
Sbjct: 133 RMLDAVEFYALNLGDPIPMSAFHGLGTGDVLDRLTEYFPPKTFEKDEERHLRVAIVGRPN 192

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEK 286
            GKSSL N L  K+ ++V+ IPGTTRD +   +   G  + + DTAGIR   + +  +EK
Sbjct: 193 VGKSSLLNRLLGKERSVVSPIPGTTRDPIDTTITYYGEPITLIDTAGIRRAGKIERGIEK 252

Query: 287 EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTE- 337
             + RT   +E  D+ +LL +              +        I +  K D  +  ++ 
Sbjct: 253 YSVLRTLRAIERCDVAMLLVDATEGVTAQDTHIAGMVIEAKKGLILVVNKWDAITKDSQT 312

Query: 338 --EYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             E++H                IS+ TG+ +  L++  + I + + K++P S  ++
Sbjct: 313 YYEFEHRVREAFKFVDYAPIVFISALTGQRVSHLLDYAREIYAQRQKRIPTSELNN 368



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 29/184 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---R 278
           + I+G  N GKS+ FN L  +  AIV DIPGTTRD L  D    G    + DTAG+    
Sbjct: 6   VAIVGRPNVGKSTFFNRLIGERRAIVEDIPGTTRDRLYGDTFWNGREFTVVDTAGLLFGD 65

Query: 279 ETDDIVEKEGIKRTFL----EVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
           E   + E E  +RT +     +  AD I+ + +             +I        +   
Sbjct: 66  EDPSLPEVEIARRTRVQAEHAIAEADAIIFMVDGRDGLTTADADVADILRTTAKPVVLAV 125

Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            K D      +  +           +S+F G G  ++++++      K  +        +
Sbjct: 126 NKCDSQERMLDAVEFYALNLGDPIPMSAFHGLGTGDVLDRLTEYFPPKTFEKDE-----E 180

Query: 378 RHLY 381
           RHL 
Sbjct: 181 RHLR 184


>gi|320335804|ref|YP_004172515.1| GTP-binding protein engA [Deinococcus maricopensis DSM 21211]
 gi|319757093|gb|ADV68850.1| GTP-binding protein engA [Deinococcus maricopensis DSM 21211]
          Length = 441

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 103/263 (39%), Gaps = 35/263 (13%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEE----DVQNFSSKEVLNDILF-------LKNDISSH 206
             +W+ +L      +   +D  + +    ++      E L            L + +  +
Sbjct: 100 VAEWLRRLGKPVIVVANKIDNPKHDAYLAELWGLGFGEPLPVSAEHARGLDDLMDRVLDY 159

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           + +           +I ++G  N GKSSL NA+   +  IV+D+PGTTRD + ++ D  G
Sbjct: 160 LPEDDADVPEVAPIRISLIGRPNVGKSSLLNAITGSERVIVSDVPGTTRDSVDVEWDYAG 219

Query: 267 YLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSKKE-------ISFPK 318
               + DTAGIR+  D  +E+  + R+   +  +D+ILL+  +    +       +++  
Sbjct: 220 QRFVLVDTAGIRKRPDTSIEEYAMMRSEAAITRSDVILLVLNVTELGDHELKLANLAYDS 279

Query: 319 NIDFIFIGTKSDLYST----------------YTEEYDHLISSFTGEGLEELINKIKSIL 362
               I +  K DL                            S+    G+ +L+ +   + 
Sbjct: 280 GKPVIVVVNKWDLVPDEDLKKAEKDLDQKLFHIAFAPRVYTSAINEYGIHDLLAEAMKLY 339

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQ 385
           +    ++P S  +    ++ + Q
Sbjct: 340 AKWQSRIPTSELNRWLGVWQMRQ 362



 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 18/173 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSLFN L  +  A+V D PG TRD     +  + + + + DT G+  +
Sbjct: 3   KVAIVGRPNVGKSSLFNRLVGRREAVVADFPGVTRDAKEGVMLYQNHRIVLIDTGGL-WS 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D  E+   ++    +E A  ++ + +             E         I +  K D  
Sbjct: 62  GDEWEEAIRQKAEWAMEGAQCVIFVLDPRDDLSAADYEVAEWLRRLGKPVIVVANKIDNP 121

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            +  Y  E           +S+    GL++L++++   L      +P   P  
Sbjct: 122 KHDAYLAELWGLGFGEPLPVSAEHARGLDDLMDRVLDYLPEDDADVPEVAPIR 174


>gi|219669400|ref|YP_002459835.1| GTP-binding protein EngA [Desulfitobacterium hafniense DCB-2]
 gi|254783150|sp|B8G2P9|DER_DESHD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|219539660|gb|ACL21399.1| small GTP-binding protein [Desulfitobacterium hafniense DCB-2]
          Length = 441

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 15/168 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++ SH  +    E+  +  +I ++G  N GKSSL N L  ++  IV++IPGTTRD 
Sbjct: 155 DLLDEVVSHFPEDIEEEVDPDTIRIAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +    + EG    I DTAG+R     +++ E+  + R+   V+ +D+IL+L +       
Sbjct: 215 IDSAFEHEGKHYIIIDTAGMRRKGRIEELTEQYSVSRSLRAVDRSDVILMLLDAGEGVTE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
                   +       + +  K DL     E+ D  ++ F  +  EEL
Sbjct: 275 QDKKIAGYAHEAGKGIVLVVNKWDLI----EKDDKTMNRFEKDIREEL 318



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN LA   VAIV + PG TRD L  D +  G    I DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLFNRLAGGLVAIVENRPGVTRDRLYRDSEWLGRKFTIIDTGGIEFVN 65

Query: 282 D--IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGT---- 327
           +   +  +  ++  + +E AD+I+ + +         +   +         I        
Sbjct: 66  ENTSISAQMRRQAEIAIEEADVIVFVIDAQISPTPDDDMIAQTLRRSGKPVILAANKVEN 125

Query: 328 --KSDLYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K++LY  Y         IS+  G  + +L++++ S      ++ 
Sbjct: 126 FAKTELYEFYNLGLGEPVPISAVHGMNIGDLLDEVVSHFPEDIEEE 171


>gi|145631633|ref|ZP_01787398.1| GTP-binding protein EngA [Haemophilus influenzae R3021]
 gi|144982767|gb|EDJ90296.1| GTP-binding protein EngA [Haemophilus influenzae R3021]
          Length = 504

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 113/282 (40%), Gaps = 33/282 (11%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ-N 186
           D I +++       +     E ++        Q ++++    +    + D ++    +  
Sbjct: 123 DGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEEVQ 182

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              ++  +        +       +L E      KI I+G  N GKS+L N +  +D  +
Sbjct: 183 DEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVV 242

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           V D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   +++A+++L
Sbjct: 243 VFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVL 302

Query: 304 LLKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD---------- 340
           L  +     S +++S            + +  K      D+      E D          
Sbjct: 303 LTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFAR 362

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            H IS+  G G+  L + IK   +   +K+  S+ +    + 
Sbjct: 363 VHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMA 404



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 15/196 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L ++ AD++L L +  +            +   +N   I +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKTTIVVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
                + D   + F   GL E+     S      + +   +      + +  +  R  E 
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEE 180

Query: 393 ASLNEKDCGLDIIAEN 408
              +E +   D  +E 
Sbjct: 181 VQ-DEWEQEFDFDSEE 195


>gi|121535817|ref|ZP_01667617.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1]
 gi|121305589|gb|EAX46531.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1]
          Length = 440

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   + Q +  E   +  K+  +G  N GKSSL NAL  ++  IV+DIPGTTRD 
Sbjct: 155 DLLDRVIELLPQTEDAEEDDDVIKVAFIGRPNVGKSSLVNALLGEERVIVSDIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI-----N 309
           +    + +G    + DTAG+R    I    E+  + R+   VE AD++L++ +       
Sbjct: 215 IDTYFEKDGTKFILIDTAGMRRKARINQPVERYSVIRSLRAVERADVVLVVIDAVDGVTE 274

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST 334
             K+I   +       I +  K DL   
Sbjct: 275 QDKKIAGYAHEAGRGIIIVVNKWDLIEK 302



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +AKK V+IV D+PG TRD + +D +  G    + DT GI  ET
Sbjct: 6   VAIVGRPNVGKSTLFNFIAKKRVSIVEDLPGVTRDRIYMDAEWLGREFTMIDTGGIEIET 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
            D +      +  L +E AD+I+ + +       + +E++          +    K D  
Sbjct: 66  TDRILAATRHQAQLAIEEADVIIFVVDGKTGITTADEEVAAMLRSTRKPVVLAVNKIDSP 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 Y+            S+     + +L++++  +L          
Sbjct: 126 KDEPAVYEFYNLGLGDPIAISATNALSIGDLLDRVIELLPQTEDAEEDD 174


>gi|23007906|ref|ZP_00049576.1| COG0486: Predicted GTPase [Magnetospirillum magnetotacticum MS-1]
          Length = 189

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 93/177 (52%), Gaps = 12/177 (6%)

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI----FIGTK 328
           DTAG+R++   +E EG++R       +DL L + +      +              +  K
Sbjct: 16  DTAGLRDSHCEIESEGVRRAEARAAQSDLRLCVFDGALYPSLDAATREMIDDASLVVLNK 75

Query: 329 SDLY-----STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
            DL       T        +S+  GEG+++L+  +++++ ++F      + + +RH   +
Sbjct: 76  RDLMGPDIPDTIMGRPVLALSAKGGEGMDDLVAALQAMVESRFAVGAAPVLTRERHRVAV 135

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++ V  L      +   G+++ AE+LRLA+ SLG+ITG VDV+++LD+IF +FCIGK
Sbjct: 136 AEAVLALTRF---DPGMGVEMAAEDLRLAARSLGRITGRVDVDEILDVIFHEFCIGK 189


>gi|212638926|ref|YP_002315446.1| GTP-binding protein EngA [Anoxybacillus flavithermus WK1]
 gi|212560406|gb|ACJ33461.1| Predicted GTPase [Anoxybacillus flavithermus WK1]
          Length = 449

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 15/150 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +H  + +  E   +  K  ++G  N GKSSL NA+  ++  IV+DI GTTRD 
Sbjct: 167 DLLDAVVAHFPKRETKEYDADVIKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDA 226

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +      +G    I DTAG+R+   +    EK  + R    +E +D++L++  IN+++ I
Sbjct: 227 IDTTFKRDGQEYVIIDTAGMRKRGKVYESTEKYSVLRALKAIERSDVVLVV--INAEEGI 284

Query: 315 ----------SFPKNIDFIFIGTKSDLYST 334
                     +       + +  K D    
Sbjct: 285 IEQDKKIAGYAHEAGRGVVIVVNKWDAIEK 314



 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +       + DT GI   D
Sbjct: 19  VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNTTFNMIDTGGIDIGD 78

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           + +  +  ++  + ++ AD+I+ +      + +  E    I +  N   +    K D   
Sbjct: 79  EPLLTQIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKILYRSNKPVVLAVNKIDNPD 138

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                YD           IS   G G+ +L++ + +    +  K 
Sbjct: 139 MRENIYDFYTLGFGEPIPISGTHGLGIGDLLDAVVAHFPKRETKE 183


>gi|145633562|ref|ZP_01789290.1| GTP-binding protein EngA [Haemophilus influenzae 3655]
 gi|144985768|gb|EDJ92382.1| GTP-binding protein EngA [Haemophilus influenzae 3655]
          Length = 504

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 113/282 (40%), Gaps = 33/282 (11%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ-N 186
           D I +++       +     E ++        Q ++++    +    + D ++    +  
Sbjct: 123 DGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEEVQ 182

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              ++  +        +       +L E      KI I+G  N GKS+L N +  +D  +
Sbjct: 183 DEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVV 242

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           V D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   +++A+++L
Sbjct: 243 VFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVL 302

Query: 304 LLKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD---------- 340
           L  +     S +++S            + +  K      D+      E D          
Sbjct: 303 LTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFAR 362

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            H IS+  G G+  L + IK   +   +K+  S+ +    + 
Sbjct: 363 VHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMA 404



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 15/196 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFILIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L ++ AD++L L +  +            +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
                + D   + F   GL E+     S      + +   +      + +  +  R  E 
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEE 180

Query: 393 ASLNEKDCGLDIIAEN 408
              +E +   D  +E 
Sbjct: 181 VQ-DEWEQEFDFDSEE 195


>gi|301168789|emb|CBW28380.1| predicted GTP-binding protein [Haemophilus influenzae 10810]
          Length = 503

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 113/281 (40%), Gaps = 32/281 (11%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++       +     E ++        Q ++++    +    + D ++    +  
Sbjct: 123 DGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEEEQ 182

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
              E   D    ++      +  +  E      KI I+G  N GKS+L N +  +D  +V
Sbjct: 183 DEWEQEFDFDSEEDTALLDEALEESEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVVV 242

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILL 304
            D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   +++A+++LL
Sbjct: 243 FDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLL 302

Query: 305 LKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD----------- 340
             +     S +++S            + +  K      D+      E D           
Sbjct: 303 TIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFARV 362

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           H IS+  G G+  L + IK   +   +K+  S+ +    + 
Sbjct: 363 HFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMA 403



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L ++ AD++L L +  +            +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELIN 356
                + D   + F   GL E+  
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQ 144


>gi|160903053|ref|YP_001568634.1| small GTP-binding protein [Petrotoga mobilis SJ95]
 gi|160360697|gb|ABX32311.1| small GTP-binding protein [Petrotoga mobilis SJ95]
          Length = 460

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 37/220 (16%)

Query: 190 KEVLNDILFLKNDISSHISQGKL-------GEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
            E   +I  L + I++ +    L        E      K+ I+G  N GKSSLFN++   
Sbjct: 149 AEHNKNIFTLMDTIANTLKTSGLNSEESVDSEKDSEEIKVSIVGRPNVGKSSLFNSIIGS 208

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV----EKEGIKRTFLEVEN 298
           + AIV++IPGTTRD +   + +     +  DTAG+R+   I     E   I RT   +E 
Sbjct: 209 ERAIVSEIPGTTRDAIDHLVTMGDNTFRFIDTAGMRKKSTIHYASIEMFSISRTINAIEK 268

Query: 299 ADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---- 343
           +D+++L+ +          S   I+  +    I    K DL S      EE+ +      
Sbjct: 269 SDVVILVVDSTEGITHQDKSIIGIAEKRGKGTIIAFNKWDLVSNNHQRKEEFFNYFEKEL 328

Query: 344 -----------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                      S+    G++ELI  IK +  ++ KK+P S
Sbjct: 329 YFVNYSPLVFTSAPKRWGIQELITAIKEVEKSRNKKIPTS 368



 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 20/176 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
               ++I+G  N GKS+LFN +  +  +IV D+PG TRD ++  +  +     + DT GI
Sbjct: 2   EKPTVLIIGKPNVGKSTLFNRMIGERKSIVHDMPGVTRDNVSSTIQWDDISFTLVDTCGI 61

Query: 278 RE-TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
            E  +D +E+   K  F  +++  L++ + +             +     N   I +  K
Sbjct: 62  FEQPEDNIEERQKKIIFESLKDVSLVIFVIDGKIGLTSEDYHIADYLRKTNSKVILVINK 121

Query: 329 SDLYSTYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           ++ +  Y  E               +S+   + +  L++ I + L         S+
Sbjct: 122 AENFEKYELEMKPEIYSLGFGEGIPVSAEHNKNIFTLMDTIANTLKTSGLNSEESV 177


>gi|308050453|ref|YP_003914019.1| ribosome-associated GTPase EngA [Ferrimonas balearica DSM 9799]
 gi|307632643|gb|ADN76945.1| ribosome-associated GTPase EngA [Ferrimonas balearica DSM 9799]
          Length = 495

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 106/259 (40%), Gaps = 38/259 (14%)

Query: 143 RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND 202
            +++     G +SSL    +  +         +LD   +ED  +    E L +       
Sbjct: 141 HQIAAAQNRG-VSSLIHYALAPMAETLKEEAGELDEEIDEDAWDVEEPEQLTEED----- 194

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
                ++ +   +     K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +
Sbjct: 195 -----AESEAERLRALPIKLAIIGKPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPM 249

Query: 263 DLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF 316
           + +G    + DTAG+R      + VEK  + +T   +E+A+++LL+ +     S +++S 
Sbjct: 250 ERDGREYVLIDTAGVRRRKSVYEAVEKFSVIKTLQAIEDANVVLLVVDAREGLSDQDLSL 309

Query: 317 P-----KNIDFIFIGTKSD-----LYSTYTEEYD-----------HLISSFTGEGLEELI 355
                      +    K D     +      E D           H IS+  G G+  L 
Sbjct: 310 LGFTLNAGRALVVAVNKWDGLDMTVKEDIKRELDRRLGFIDFAKLHFISALHGTGVGHLF 369

Query: 356 NKIKSILSNKFKKLPFSIP 374
             ++    +  ++   S+ 
Sbjct: 370 ESVQEAYDSATRRCSTSLL 388



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD      +L G+   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTGTRDALVADFPGLTRDRKYGQANLAGHDFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSD 330
           + +E +  +++   +E AD++L L +  +    +          +    + +  K+D
Sbjct: 65  EGIETKMAEQSLRAIEEADVVLFLVDARAGLTAADEAISKHLRSREKRTLLVANKTD 121


>gi|189425185|ref|YP_001952362.1| GTP-binding protein EngA [Geobacter lovleyi SZ]
 gi|238692111|sp|B3E421|DER_GEOLS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189421444|gb|ACD95842.1| small GTP-binding protein [Geobacter lovleyi SZ]
          Length = 449

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 18/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN +  +  AIV D+PG TRD     ++       + DT G    T
Sbjct: 5   VAIVGRPNVGKSTLFNRIVGERRAIVDDMPGVTRDRNYAVVERYDKPFILVDTGGFEPVT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           +D + ++  +++ L +E AD+IL L +         N    +    +    ++  K D  
Sbjct: 65  EDRMLQQMREQSLLAMEEADVILFLMDAKQGLTPADNEVASMLRRVDKPVFYVVNKVDGE 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               E  +         H IS+    G+ +L+++I ++L ++       +
Sbjct: 125 KVENEAAEFYALGIDNMHTISAAHNRGIRDLLDEIMALLPDEPLPGEDEV 174



 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 94/247 (38%), Gaps = 19/247 (7%)

Query: 99  LAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSL 157
           L               ++  E   + + EA+ +  L+ ++  +      +  M   +   
Sbjct: 54  LVDTGGFEPVTEDRMLQQMREQSLLAMEEADVILFLMDAKQGLTPADNEVASMLRRVDKP 113

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL-GEII 216
               ++K+   +   EA   ++   D  +  S      I  L ++I + +    L GE  
Sbjct: 114 VFYVVNKVDGEKVENEAAEFYALGIDNMHTISAAHNRGIRDLLDEIMALLPDEPLPGE-- 171

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
                I ++G  N GKSSL N L   +  +   + GTTRD +            + DTAG
Sbjct: 172 DEVTNIAVVGRPNVGKSSLVNRLLGFERVVANPVAGTTRDSVDTFFTCNKKRYCLIDTAG 231

Query: 277 IR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFI 323
           IR   +T   +EK  +      +E AD+ L++  +N++  I+          +      +
Sbjct: 232 IRRKGKTSQKLEKYSVVDALKSIERADVALIV--LNAEDGITEQDKHIAGYVYEAGRACV 289

Query: 324 FIGTKSD 330
           F+  K D
Sbjct: 290 FVVNKWD 296


>gi|167037254|ref|YP_001664832.1| GTP-binding protein EngA [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256752010|ref|ZP_05492879.1| small GTP-binding protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|320115673|ref|YP_004185832.1| ribosome-associated GTPase EngA [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|238687651|sp|B0K8N3|DER_THEP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166856088|gb|ABY94496.1| small GTP-binding protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256749120|gb|EEU62155.1| small GTP-binding protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|319928764|gb|ADV79449.1| ribosome-associated GTPase EngA [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 439

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 30/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++   + Q +L E      KI ++G  N GKSSL N +  ++  IV++IPGTTRD 
Sbjct: 156 ELLDEVVKKLPQEEL-EYTEETIKIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKK-- 312
           +      +G    + DTAGIR    I   +E+  + R    +E +D+ LL+ +       
Sbjct: 215 IDTPFSKDGKNYVLIDTAGIRRKSRISESIERYSVLRALAAIERSDICLLMIDATEGPTE 274

Query: 313 ------EISFPKNIDFIFIGTKSDLY------------------STYTEEYDHLISSFTG 348
                   +F      I +  K D                    S  +      IS+ TG
Sbjct: 275 QDTKIAGYAFENGKGIIIVVNKWDAIKKDNNTVNEYTKMVREKLSFISFAPILFISAKTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSH 376
           + +  ++  +  +     K++   + ++
Sbjct: 335 QRVHRVLETVDKVWEEYNKRITTGLLNN 362



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 19/166 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + I+G  N GKS+LFN +  K ++IV D PG TRD +  +++       + DT G+ 
Sbjct: 3   GAMVSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNVEWLDKKFILVDTGGLD 62

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
              +DI+  +   +    ++ +D+IL L +              I      + I +  K 
Sbjct: 63  PNAEDILFSKVRLQVEAAIDASDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNKV 122

Query: 330 DLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNK 365
           D +      Y             IS+  G G+ EL++++   L  +
Sbjct: 123 DSFKEMPPTYYDFFSLGLGNPIPISASNGLGIGELLDEVVKKLPQE 168


>gi|167040606|ref|YP_001663591.1| GTP-binding protein EngA [Thermoanaerobacter sp. X514]
 gi|300914647|ref|ZP_07131963.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X561]
 gi|307724119|ref|YP_003903870.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X513]
 gi|238687595|sp|B0K3E4|DER_THEPX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166854846|gb|ABY93255.1| small GTP-binding protein [Thermoanaerobacter sp. X514]
 gi|300889582|gb|EFK84728.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X561]
 gi|307581180|gb|ADN54579.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X513]
          Length = 439

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 30/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++   + Q +L E      KI ++G  N GKSSL N +  ++  IV++IPGTTRD 
Sbjct: 156 ELLDEVVKRLPQEEL-EYTEETIKIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKK-- 312
           +      +G    + DTAGIR    I   +E+  + R    +E +D+ LL+ +       
Sbjct: 215 IDTPFSKDGKNYVLIDTAGIRRKSRISESIERYSVLRALAAIERSDICLLMIDATEGPTE 274

Query: 313 ------EISFPKNIDFIFIGTKSDLY------------------STYTEEYDHLISSFTG 348
                   +F      I +  K D                    S  +      IS+ TG
Sbjct: 275 QDTKIAGYAFENGKGIIIVVNKWDAIKKDNNTVNEYTKMVREKLSFISFAPILFISAKTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSH 376
           + +  ++  +  +     K++   + ++
Sbjct: 335 QRVHRVLETVDKVWEEYNKRITTGLLNN 362



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + I+G  N GKS+LFN +  K ++IV D PG TRD +  + +       + DT G+ 
Sbjct: 3   GAMVSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNAEWLDKKFILVDTGGLD 62

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
              +DI+  +   +    ++ +D+IL L +              I      + I +  K 
Sbjct: 63  PNAEDILFSKVRLQVEAAIDTSDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNKV 122

Query: 330 DLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNK 365
           D +      Y             IS+  G G+ EL++++   L  +
Sbjct: 123 DSFKEMPPTYYDFFSLGLGNPIPISASNGLGIGELLDEVVKRLPQE 168


>gi|307267081|ref|ZP_07548594.1| ribosome-associated GTPase EngA [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917912|gb|EFN48173.1| ribosome-associated GTPase EngA [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 439

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 30/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++   + Q +L E      KI ++G  N GKSSL N +  ++  IV++IPGTTRD 
Sbjct: 156 ELLDEVVKKLPQEEL-EYTEETIKIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKK-- 312
           +      +G    + DTAGIR    I   +E+  + R    +E +D+ LL+ +       
Sbjct: 215 IDTPFSKDGKNYVLIDTAGIRRKSRISESIERYSVLRALAAIERSDICLLMIDATEGPTE 274

Query: 313 ------EISFPKNIDFIFIGTKSDLY------------------STYTEEYDHLISSFTG 348
                   +F      I +  K D                    S  +      IS+ TG
Sbjct: 275 QDTKIAGYAFENGKGIIIVVNKWDAIKKDNNTVNEYTKMVREKLSFISFAPILFISAKTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSH 376
           + +  ++  +  +     K++   + ++
Sbjct: 335 QRVHRVLETVDKVWEEYNKRITTGLLNN 362



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + I+G  N GKS+LFN +  K ++IV D PG TRD +  + +       + DT G+ 
Sbjct: 3   GAMVSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNAEWLDKKFILVDTGGLD 62

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
              +DI+  +   +    ++ +D+IL L +              I      + I +  K 
Sbjct: 63  PNAEDILFSKVRLQVEAAIDASDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNKV 122

Query: 330 DLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNK 365
           D +      Y             IS+  G G+ EL++++   L  +
Sbjct: 123 DSFKEMPPTYYDFFSLGLGNPIPISASNGLGIGELLDEVVKKLPQE 168


>gi|331090851|ref|ZP_08339697.1| GTP-binding protein engA [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330399710|gb|EGG79372.1| GTP-binding protein engA [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 442

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++  H  +    E   +  +I I+G  N GKSS+ N L   +  IV+DI GTTRD 
Sbjct: 156 DMLDEVVKHFPETTAEEAEDDRPRIAIVGKPNVGKSSIINKLQGDNRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +   G      DTAG+R  + I    E+  I RT   VE AD++L++ +       
Sbjct: 216 IDTPITYNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLIVIDATEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE---EYDH---------------LISSFTG 348
                  I+  +    I +  K D    + +   EY+                 +S+ TG
Sbjct: 276 QDAKIAGIAHERGKGIIIVVNKWDAIEKHDKTMYEYEKQVRQVLSYMPYAEIMYVSAHTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L  KI  ++ N+  ++   + +
Sbjct: 336 QRLNKLYEKIDMVIENQTLRVATGVLN 362



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 76/167 (45%), Gaps = 19/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  +++       + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYAEVNWLDKEFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + ++ AD+I+ L ++            ++        + +  K D +
Sbjct: 66  KDIILSQMREQAQIAIDTADVIIFLTDVKQGLVDSDSKVADMLRRSGKPVVLVVNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             +  +              IS+ +  G+ ++++++         + 
Sbjct: 126 QKFMADVYEFYNLGIGDPFPISASSRLGIGDMLDEVVKHFPETTAEE 172


>gi|113474219|ref|YP_720280.1| GTP-binding protein EngA [Trichodesmium erythraeum IMS101]
 gi|123161345|sp|Q119L7|DER_TRIEI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|110165267|gb|ABG49807.1| small GTP-binding protein [Trichodesmium erythraeum IMS101]
          Length = 453

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 60/300 (20%), Positives = 120/300 (40%), Gaps = 48/300 (16%)

Query: 129 ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS 188
           +++A L+ +   +       G++G    +      +   I   +      +E        
Sbjct: 76  QAMAALVEASVAIFVVDGQTGLTGGDEEIAQWLRQQTIPILLAVNKCESITEGLTQAAMF 135

Query: 189 SKEVLNDIL-----------FLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLF 236
            +  L +              L +D+ +++     GEI   N  KI I+G  N GKSSL 
Sbjct: 136 WELGLGEPYPISGIHGNGTGELLDDLITYLPT--QGEITETNQTKIAIVGRPNVGKSSLL 193

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTF 293
           N+   +  AIV+ I GTTRD +   ++  G   ++ DTAGIR+  ++    E  GI R F
Sbjct: 194 NSFIGEKRAIVSPISGTTRDAIDTVVERNGKTYRLIDTAGIRKKKNVEYGAEFFGINRAF 253

Query: 294 LEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTKSDLYST-----YTEEYD 340
             +  A++++ + +         ++++          + +  K D         YT E +
Sbjct: 254 KAIRRAEVVMFVIDALDGVTEQDQKLANRIIEDGRACVIVVNKWDAIEKDNYTIYTYEQE 313

Query: 341 -------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
                          +S+ TG+ +E++IN I +  +   +++  S+ +       L + +
Sbjct: 314 VRSRLYFVEWAEMIFVSALTGKRVEKIINLIDNAANEYQRRVTTSVIN-----EVLEEAI 368



 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++ N LA+   AIV D PG TRD    +   E    ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTIVNRLAESKDAIVHDEPGITRDRTYRNAYWEDREFQVVDTGGLVFDD 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLY 332
           +        ++    +  A + + + +  +      +EI+     + I  +    K +  
Sbjct: 66  NTEFLPLIREQAMAALVEASVAIFVVDGQTGLTGGDEEIAQWLRQQTIPILLAVNKCESI 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +    +            + IS   G G  EL++ + + L  + +    +
Sbjct: 126 TEGLTQAAMFWELGLGEPYPISGIHGNGTGELLDDLITYLPTQGEITETN 175


>gi|167947905|ref|ZP_02534979.1| tRNA modification GTPase TrmE [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 118

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/109 (47%), Positives = 72/109 (66%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           ND+  L   ++  I     G ++R+G  +VI G  NAGKSSL N L+ ++ AIVTDIPGT
Sbjct: 6   NDLKTLTEQLAQLIQSANTGRLLRDGMTLVIAGRPNAGKSSLLNQLSGEERAIVTDIPGT 65

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           TRD+L   + ++G  + I DTAGIR+++D VE EGI+R   E+E AD I
Sbjct: 66  TRDLLREQIQIDGLPLHIIDTAGIRDSEDPVEIEGIRRARQEIEQADRI 114


>gi|157364503|ref|YP_001471270.1| small GTP-binding protein [Thermotoga lettingae TMO]
 gi|166920104|sp|A8F7S2|DER_THELT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157315107|gb|ABV34206.1| small GTP-binding protein [Thermotoga lettingae TMO]
          Length = 435

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 29/214 (13%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEII--RNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
            +  N+I  L + I++ + +     ++   +  KI I+G  N GKSSLFNAL   D A V
Sbjct: 146 AQHGNNIDELLDKITNLLRESGEKSMLFKESSPKIAIVGKPNVGKSSLFNALLNMDRATV 205

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI----VEKEGIKRTFLEVENADLIL 303
           T +PGTTRD +   +++ G    + DTAG+R    I    +E+  I RT   +++AD++L
Sbjct: 206 TPVPGTTRDPVDEMIEINGKKYILVDTAGMRRKSRIERKTIEQFSISRTIDTIQSADVVL 265

Query: 304 LLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD--------------- 340
           L+ +             ++        + +  K DL +   ++Y+               
Sbjct: 266 LVIDATEGVTRQDKRIADLILSSGRAMVCVINKFDLVNVRKKDYEAALFTEMPFINFCRI 325

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              S+    GLE+L N I     +  +K+P  + 
Sbjct: 326 VFTSAVKKSGLEKLFNAIDEAYESYCRKVPQQLL 359



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 19/166 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           +VI G +N GKS+LFN L  +  AI   I G TRD++   +        + DT G+ E T
Sbjct: 4   VVIAGRANVGKSTLFNRLIGRRKAITEKIEGVTRDIIKGLVVYNETSFLLYDTCGVFEST 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLY 332
            D V      + F     ADLIL + +    I S+ E    +        + +  KS+  
Sbjct: 64  RDPVLLAMRDKAFEAFRKADLILFVVDGRSGITSEDEYVAQQLRKIAKKVLMVINKSENM 123

Query: 333 STYTEEYD----------HLISSFTGEGLEELINKIKSILSNKFKK 368
           S   +               +S+  G  ++EL++KI ++L    +K
Sbjct: 124 SVVEKNLPDIMKLGFAEYIPVSAQHGNNIDELLDKITNLLRESGEK 169


>gi|119494580|ref|ZP_01624713.1| GTP-binding protein EngA [Lyngbya sp. PCC 8106]
 gi|119452086|gb|EAW33297.1| GTP-binding protein EngA [Lyngbya sp. PCC 8106]
          Length = 453

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 95/207 (45%), Gaps = 30/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  +I +    E      ++ I+G  N GKSSL NA   ++ AIV+ I GTTRD 
Sbjct: 156 ELLDELIKYIPKADELEESEE-IRVAIVGRPNVGKSSLLNAFLGENRAIVSPISGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++  G   ++ DTAGIR   ++    E  GI R F  +  ++++LL+ +   +   
Sbjct: 215 IDTVVERNGKTYRLVDTAGIRRKKNVEYGAEFFGINRAFKAIRRSNIVLLIIDAIDRVTE 274

Query: 312 KEISFPK-----NIDFIFIGTKSDLYSTYT---EEYD---------------HLISSFTG 348
           +++             + +  K D+    T    EY+                 +S+ TG
Sbjct: 275 QDLKLANRVSEEGRACVIVVNKWDIIEKDTYTILEYEREVKARLYFMDWAKTIFVSAMTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + +E++I+ +   ++   +++  ++ +
Sbjct: 335 QRVEKIIDLVDQAVAEHQRRVSTAVIN 361



 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L++   +IV D PG TRD        +     + DT G+   D
Sbjct: 6   VAIVGRPNVGKSTLVNRLSETQDSIVHDQPGITRDRTYRYAYWQDREFSVVDTGGLIFDD 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIG--TKSDLY 332
           D        ++  + +  A + + + +         +   S+ +      +    K +  
Sbjct: 66  DTEFLPLIREQVMVALAEATVAIFVVDGQTGLTGGDEAIASWLREHSVPVLLAVNKCESP 125

Query: 333 ST----------YTEEYDHLISSFTGEGLEELINKIKSILS 363
           +T                  +SS  G G  EL++++   + 
Sbjct: 126 TTGLIQSMQFWELGLGNPFPLSSIHGSGTGELLDELIKYIP 166


>gi|291550925|emb|CBL27187.1| ribosome-associated GTPase EngA [Ruminococcus torques L2-14]
          Length = 442

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +++H  +    E   +  +I I+G  N GKSS+ N L  ++  IV++I GTTRD 
Sbjct: 156 DMLDAVTAHFPEWDPSEADDDRPRIAIVGKPNVGKSSIINRLLGENRVIVSNIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++  +G      DTAG+R  + I    E+  I RT   VE AD++L++ +       
Sbjct: 216 IDTEIVHDGKEYIFIDTAGLRRKNKIKEELERYSIIRTVSAVERADVVLMVIDATEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYT---EEYDH---------------LISSFTG 348
                  I+  +    I +  K D         +EY+                 +S+ TG
Sbjct: 276 QDAKIAGIAHERGKGVIIVVNKWDAIEKNDKTMKEYEGKIRQVLSYMPYAEIMYVSALTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + I  ++ N+  ++   + +
Sbjct: 336 QRLPKLYDMIDMVIENQTLRIATGVLN 362



 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 19/163 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  D+D       + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADVDWLDRDFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + ++ AD+I+ + ++            ++        + +  K D +
Sbjct: 66  SDIILSQMREQAQIAIDTADVIIFITDVKQGLVDSDSKVADMLRRSGKPVVLVVNKVDNF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNK 365
             Y  +              IS+ +  GL ++++ + +     
Sbjct: 126 DKYMADVYEFYNLGIGDPVPISAASRLGLGDMLDAVTAHFPEW 168


>gi|209694322|ref|YP_002262250.1| GTP-binding protein EngA [Aliivibrio salmonicida LFI1238]
 gi|238058970|sp|B6EGZ1|DER_ALISL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|208008273|emb|CAQ78418.1| GTP-binding protein [Aliivibrio salmonicida LFI1238]
          Length = 500

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 27/203 (13%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            D++   ++     +     K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I
Sbjct: 192 KDLTEEDAEKDFARLQDQPIKLAIIGRPNVGKSTLINRILGEERVVVYDMPGTTRDSIYI 251

Query: 261 DLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEI 314
            ++ EG    + DTAG+R    I    EK  + +T   +E+A+++LL+ +     S +++
Sbjct: 252 PMEREGQEYVLIDTAGVRRRGRINETVEKFSVIKTLKAIEDANVVLLVIDARENISDQDL 311

Query: 315 SFP-----KNIDFIFIGTKSD-----LYSTYTEEYD-----------HLISSFTGEGLEE 353
           S            +    K D     +      E D           H IS+  G G+  
Sbjct: 312 SLLGFALNAGRSLVIAVNKWDGLNNEVKEKVKSELDRRLGFVDFARLHFISALHGTGVGH 371

Query: 354 LINKIKSILSNKFKKLPFSIPSH 376
           L   ++    +  K++  S+ + 
Sbjct: 372 LYESVQEAYVSATKRVGTSVLTR 394



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN + +   A+V D PG TRD       LE     + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRVTRTRDALVADFPGLTRDRKYGRAKLEEQEFILIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLYS 333
           + VE +  +++   +E AD++L + +      +S + I+     +      +  K D   
Sbjct: 65  EGVETKMAEQSLAAIEEADVVLFMVDGRAGLTSSDEAIAKHLRSREKPTFLVVNKIDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELIN 356
                 +            ++  G G+  L+ 
Sbjct: 125 ADAASAEFWQLGMSKVYQIAASHGRGVTSLLE 156


>gi|261252182|ref|ZP_05944755.1| GTP-binding protein EngA [Vibrio orientalis CIP 102891]
 gi|260935573|gb|EEX91562.1| GTP-binding protein EngA [Vibrio orientalis CIP 102891]
          Length = 495

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 120/284 (42%), Gaps = 39/284 (13%)

Query: 121 GKIDLLEAESL-ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            K+D ++A++  AD      E   +++     G      G  ID+  +  +   A+    
Sbjct: 118 NKVDGIDADAASADFWQLGVENMYQIAAAHGRG-----VGALIDRALNPFAEKMAEEAKG 172

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E ED+  F       D+   K D +   ++ +   +     K+ I+G  N GKS+L N +
Sbjct: 173 EIEDLTEF------EDLDEEKLDYTEEEAEEEFKRLQDQPIKLAIIGRPNVGKSTLTNRI 226

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  +V D+PGTTRD + I ++ +G    + DTAG+R    I    EK  + +T   V
Sbjct: 227 LGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRKRINETVEKFSVVKTLKAV 286

Query: 297 ENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEEY--------- 339
           E+A+++LL+ +     S +++S            +    K D   T  +E+         
Sbjct: 287 EDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWDGLDTDVKEHVKKELDRRL 346

Query: 340 -------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                   H IS+  G G+  L   ++    +   ++  S+ + 
Sbjct: 347 GFVDFARIHFISALHGTGVGHLFESVQEAYKSATTRVGTSVLTR 390



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +     +I+   +        + +  K D   
Sbjct: 65  EGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDIAISNHLRKIEKPSMLVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINK 357
                 D            ++  G G+  LI++
Sbjct: 125 ADAASADFWQLGVENMYQIAAAHGRGVGALIDR 157


>gi|260887150|ref|ZP_05898413.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185]
 gi|330839080|ref|YP_004413660.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185]
 gi|260863212|gb|EEX77712.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185]
 gi|329746844|gb|AEC00201.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185]
          Length = 442

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 11/152 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +   +G   E   +   I ++G  N GKSSL NAL  ++  IV+D+ GTTRD 
Sbjct: 155 DLLDALVALFPEGAEEEKESDEISIAVIGRPNVGKSSLVNALLGEERVIVSDVAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +      E     + DTAG+R     D  +E+  + R    V+ AD++L++ +  +    
Sbjct: 215 IDTHFMAEDTKFILIDTAGMRRKGKIDAPIERYSVMRALRAVDRADVVLVVLDATAGITE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEE 338
                   +       + I  K D+Y    E+
Sbjct: 275 QDKKIAGYAHESGKAVVLIVNKWDIYENKDEK 306



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L +K V+IV D+PG TRD + +D +  G    + DT GI  +T
Sbjct: 6   VAIVGRPNVGKSTLFNKLGRKRVSIVDDLPGVTRDRIYLDAEWLGKEFTMIDTGGIELDT 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLY 332
            D++ +   ++  + +E AD+IL L +  +   ++  +            +    K D  
Sbjct: 66  SDVILRSMRQQAQIAMEEADVILFLVDGRAGLTLADEEVGKMLRTTKKPVLLAVNKIDSP 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKL 369
              ++ Y+            S+     L +L++ + ++     ++ 
Sbjct: 126 KQESDVYEFYNLGLGDPVPISATNAMNLGDLLDALVALFPEGAEEE 171


>gi|167630055|ref|YP_001680554.1| GTP-binding protein [Heliobacterium modesticaldum Ice1]
 gi|238687893|sp|B0TFW3|DER_HELMI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|167592795|gb|ABZ84543.1| GTP-binding protein [Heliobacterium modesticaldum Ice1]
          Length = 442

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + + + +    +   +  KI ++G  N GKSSL NA+  ++  IV+DIPGTTRD 
Sbjct: 156 DLLDAVVAVLPENNGEDDDPDTIKIAVIGRPNVGKSSLVNAILGQERVIVSDIPGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +    D +G    + DTAG+R     ++ VE+  + R+   ++ +D++L++ + +     
Sbjct: 216 IDTAFDRDGKRYILIDTAGMRRKGRIEEAVERYSVMRSLRAIDRSDVVLMVIDASQGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +       + +  K DL   
Sbjct: 276 QDKKIAGYAHEAGKACVLVLNKWDLVPK 303



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS+LFN L    VAIV D PG TRD L  D +       + DT G+   +
Sbjct: 6   VAIVGRPNVGKSTLFNRLTGGRVAIVEDQPGVTRDRLYRDANWLDREFTVVDTGGLDFGD 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDL 331
            ++       K+    +E AD+IL L +    I +  E    I          +  K + 
Sbjct: 66  RENPFSAIIHKQAEAAMEEADVILFLVDGRSGITADDEAVAAILRKAKKPVFLVVNKIED 125

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +S     +D           IS+  G    +L++ + ++L     +   
Sbjct: 126 FSQRERYFDFYSLGLGEPIPISASHGMNTGDLLDAVVAVLPENNGEDDD 174


>gi|90408609|ref|ZP_01216764.1| GTP-binding protein EngA [Psychromonas sp. CNPT3]
 gi|90310301|gb|EAS38431.1| GTP-binding protein EngA [Psychromonas sp. CNPT3]
          Length = 488

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 114/271 (42%), Gaps = 35/271 (12%)

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           D I +++      ++      L  +Y         +R  I+  LD    +  ++    E 
Sbjct: 121 DGIDADSACAEFYAL-----GLGEVYHIAAAHGKGVRKMIDTALD-GFFDHSEDLDDAEF 174

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
             D   +++D    + + +    +    K+ I+G  N GKS+L N +  ++  +V D PG
Sbjct: 175 DLDPELIEDDEEKLLREQQRLADL--PIKLAIIGKPNVGKSTLINRILGEERVVVFDQPG 232

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN 309
           TTRD + I +  +     + DTAG+R+    ++ VEK  + +T   +E+A+++LL+ +  
Sbjct: 233 TTRDSIYIPMSRDDREYILIDTAGVRKRKKVNETVEKFSVIKTLKAIEDANVVLLVIDAR 292

Query: 310 ---SKKEI-----SFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISS 345
              +++++     +       +    K D  + Y +E                  H IS+
Sbjct: 293 DGIAEQDLCLLGYTLNSGRSLVIAVNKWDGMTDYDKERVKTELDRRLGFIDFAKIHFISA 352

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             G G+  L   ++    +  K++  S+ + 
Sbjct: 353 LHGTGVGHLYESVEEAYDSSTKRISTSMLTR 383



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 72/168 (42%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD       L+     + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLDEDEFIVIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + ++     ++ L ++ AD +L + +       + + I+     +      +  K+D   
Sbjct: 65  EGIDSLMAGQSLLAIDEADAVLFMVDARVGLMVADQAIADHLRKQEKKVFIVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +   +         + I++  G+G+ ++I+       +  + L  +
Sbjct: 125 ADSACAEFYALGLGEVYHIAAAHGKGVRKMIDTALDGFFDHSEDLDDA 172


>gi|258511668|ref|YP_003185102.1| ribosome-associated GTPase EngA [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478394|gb|ACV58713.1| ribosome-associated GTPase EngA [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 444

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 110/316 (34%), Gaps = 48/316 (15%)

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS-------------------MEG 149
                  R  + G I++ E + + +LI  + ++    +                   +  
Sbjct: 47  EWNGVPFRVIDTGGIEMDEEDEMGNLIRVQAQIAIDEADVILFVVDGRQGVTQADEHVAQ 106

Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209
           +           ++KL H+     +   +          S E       L + + + + +
Sbjct: 107 VLRRAHKPVVLGVNKLDHVEQHALSYEFYRLGFGEPIPFSAEHGQGTGDLLDAVVAALPK 166

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
               +   +  +I  +G  N GKSSL N L  ++  +V+ + GTTRD +   L+ +G   
Sbjct: 167 ASEEDEDEDAIRIAFIGRPNVGKSSLVNRLLGEERVMVSPVAGTTRDAVDTPLERDGQTY 226

Query: 270 KISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPK 318
            + DTAG+R    +    EK  + R    ++ AD+  ++ +  +            +   
Sbjct: 227 MLVDTAGMRRKGKVYERIEKYSVLRALRALDRADVAFVVLDAQTGIVEQDKRVAGYALDA 286

Query: 319 NIDFIFIGTKSD-----------LYSTYTEEYDH-------LISSFTGEGLEELINKIKS 360
                F+  K D                 +E+          +S+ TG+ +  L++  K 
Sbjct: 287 GCAIAFVVNKWDAIEKDDKTAHRFEEKIRDEFPFLRFAPVIFVSALTGQRVSRLLDVAKE 346

Query: 361 ILSNKFKKLPFSIPSH 376
           I      ++P S  + 
Sbjct: 347 IAEYHAMRVPTSTLNR 362



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G +N GKS+LFN L  + V+IV D PG TRD +    +  G   ++ DT GI  + 
Sbjct: 6   VAIVGRANVGKSTLFNRLVGRRVSIVEDTPGVTRDRIYGKSEWNGVPFRVIDTGGIEMDE 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +D +      +  + ++ AD+IL + +             ++    +   +    K D  
Sbjct: 66  EDEMGNLIRVQAQIAIDEADVILFVVDGRQGVTQADEHVAQVLRRAHKPVVLGVNKLDHV 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +   Y+            S+  G+G  +L++ + + L    ++   
Sbjct: 126 EQHALSYEFYRLGFGEPIPFSAEHGQGTGDLLDAVVAALPKASEEDED 173


>gi|302389542|ref|YP_003825363.1| ribosome-associated GTPase EngA [Thermosediminibacter oceani DSM
           16646]
 gi|302200170|gb|ADL07740.1| ribosome-associated GTPase EngA [Thermosediminibacter oceani DSM
           16646]
          Length = 436

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I   I + +  +      K+ ++G  N GKSSL NA+  ++  IV+DIPGTTRD 
Sbjct: 154 DLLDQIVGFIDEDEGPDYDEGVIKVAVVGKPNVGKSSLVNAILGEERVIVSDIPGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +    + EG  + + DTAG+R    +   +E     R    VE AD++L++ +   +   
Sbjct: 214 IDTPFEYEGQKMVLIDTAGMRRKSRVKEDIEFYSNIRALGAVERADIVLVVLDATQEISE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                  I+       I +  K DL   
Sbjct: 274 QDKKIAGIAHEAGKAVIIVVNKWDLVEK 301



 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 18/166 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           + + I+G  N GKS+LFN +  K ++IV D PG TRD +   ++  G    + DT GI  
Sbjct: 3   FTVAIVGRPNVGKSTLFNRIIGKRISIVDDKPGVTRDRIYGQVEWRGKKFTLVDTGGIDP 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKSD 330
           E  D++     ++    ++++DLIL L +         K+  +  +      I +  K D
Sbjct: 63  EGSDVMTSHIRRQVEFAIDSSDLILFLLDSKEGLLPTDKEVAALLRKSGKPIIPVINKVD 122

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFK 367
            Y+   E Y+            S+  G  + +L+++I   +     
Sbjct: 123 DYAAKPELYEFYQLGLGEPVFISAIHGSNVGDLLDQIVGFIDEDEG 168


>gi|218294927|ref|ZP_03495781.1| small GTP-binding protein [Thermus aquaticus Y51MC23]
 gi|218244835|gb|EED11359.1| small GTP-binding protein [Thermus aquaticus Y51MC23]
          Length = 432

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 24/183 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  NAGKSSL NA+  ++  IV++ PGTTRD + +++   G    + DTAGIR
Sbjct: 173 GIRLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDTIDVEVYRNGNRFVLLDTAGIR 232

Query: 279 ETDD-IVEKEGIKRTFLEVENADLILLLKEINS--KKEISFP-----KNIDFIFIGTKSD 330
           +  + IVE+  I+R+   +E AD++LL+ +      +E+        K    + + TK D
Sbjct: 233 KRPESIVEELAIRRSLRAIEEADVVLLVVDPFQVGDRELKLANHAMEKGKPVLLVITKWD 292

Query: 331 LYST---------YTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           L              E+  H         S+FT + L+ +  +   +      ++P +  
Sbjct: 293 LVKKEEAPRVRRELREKLAHLEHLPRVYTSAFTKQNLDRIFQEALRLYQLNHTRVPTAEL 352

Query: 375 SHK 377
           +  
Sbjct: 353 NRW 355



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 83/206 (40%), Gaps = 22/206 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+VI+G  N GKSSLFN L  K  A+V D PG TRD+    ++ E     + DT G+  +
Sbjct: 3   KVVIVGRPNVGKSSLFNRLLGKRSAVVADEPGVTRDLKEGVVETEQGRFLLVDTGGL-WS 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D  EK+  ++    +E A+L+L   +  S          E    K    I + TK D  
Sbjct: 62  GDRWEKKIQEKVDRALEEAELVLFAVDGRSDLTPADYEVAEYLRKKGKPVILVATKVDSP 121

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                L   Y   +      SS    GLEEL+  I   L  K       +   +  +   
Sbjct: 122 SHEAYLGPLYALGFGDPIPTSSEHKRGLEELLRAIWQRLPVKQMDAEPEVAGIRLAIVGR 181

Query: 384 SQT-VRYLEMASLNEKDCGLDIIAEN 408
                  L  A L E+     I++E 
Sbjct: 182 PNAGKSSLLNAILGEERV---IVSEE 204


>gi|312898938|ref|ZP_07758326.1| ribosome-associated GTPase EngA [Megasphaera micronuciformis F0359]
 gi|310620100|gb|EFQ03672.1| ribosome-associated GTPase EngA [Megasphaera micronuciformis F0359]
          Length = 442

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 18/225 (8%)

Query: 125 LLEAESLADLISSET----EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           + EA+ +  ++  +T    + Q   +M   SG+   L    ++K+  +   +     +  
Sbjct: 82  IHEADVILYVVDGKTGIQPQDQEIAAMLRASGKPVILV---VNKIDSVEQEVNIYEFYGL 138

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
                   S   L ++  L +++ SHI +  + E   +   I ++G  N GKSSL NAL 
Sbjct: 139 GLGDPIGVSAVNLMNLGDLLDEVLSHIKEVPVQEDDESVVHIALVGRPNVGKSSLTNALL 198

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVE 297
            K+  IV+D+ GTTRD +      +G    + DTAG+R    I    E+  + R    ++
Sbjct: 199 GKERVIVSDMAGTTRDSIDTHWKHDGTEFVLIDTAGMRRKGKIDLPVERYSVVRALRAID 258

Query: 298 NADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLYST 334
            +D+ +L+ +         K+I+          I I  K DL + 
Sbjct: 259 RSDVAVLVLDGVEGVTEQDKKIAGYIHESGKGCIIIVNKWDLVTK 303



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 19/174 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + ++G  N GKS+LFNA+ KK ++IV D+PG TRD +  D +  G    + DT GI   +
Sbjct: 6   VAVVGRPNVGKSTLFNAIVKKRISIVEDLPGVTRDRIYFDAEWLGREFTLIDTGGIEFVD 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDL 331
           +D+ +      +  L +  AD+IL + +  +      +EI+          I +  K D 
Sbjct: 66  SDNNIFTSMRYQAELAIHEADVILYVVDGKTGIQPQDQEIAAMLRASGKPVILVVNKIDS 125

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                  Y+           +S+     L +L++++ S +     +       H
Sbjct: 126 VEQEVNIYEFYGLGLGDPIGVSAVNLMNLGDLLDEVLSHIKEVPVQEDDESVVH 179


>gi|152978550|ref|YP_001344179.1| GTP-binding protein EngA [Actinobacillus succinogenes 130Z]
 gi|150840273|gb|ABR74244.1| small GTP-binding protein [Actinobacillus succinogenes 130Z]
          Length = 503

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 107/265 (40%), Gaps = 32/265 (12%)

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
           +++     G ++ L    +  L         +++ +++ D           +   L ++ 
Sbjct: 144 QIAAAQGRG-VAQLMEAVLAPLAEKIKKNTEEIEDTKDSDEWEQGFDFSDENDTALLDEA 202

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
                  +  +      KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++
Sbjct: 203 LEE----ENTKPDHRNIKIAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPME 258

Query: 264 LEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP 317
            +G    I DTAG+R+   +    EK  + +T   +++A+++LL  +     S +++S  
Sbjct: 259 RDGQHYTIIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLL 318

Query: 318 -----KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEELIN 356
                     + +  K      D+      E D           H IS+  G G+  L  
Sbjct: 319 GFILNAGRSLVIVVNKWDGLDQDIKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFE 378

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLY 381
            ++   +   +K+  S+ +    + 
Sbjct: 379 SVREAYACATQKMTTSLLTRILQMA 403



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 18/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANISGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK------NIDFIFIGTKSDLY 332
           + VE++  +++ L +E AD++L L +  +     +I          +   I +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLTPADIGIANYLRQRQSKTTIVVANKTDGI 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              +   +            ++  G G+ +L+  + + L+ K KK    I
Sbjct: 126 DADSHCAEFYQLGLGEITQIAAAQGRGVAQLMEAVLAPLAEKIKKNTEEI 175


>gi|161349991|ref|YP_175372.2| GTP-binding protein EngA [Bacillus clausii KSM-K16]
          Length = 437

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H  +    +   +  K+ ++G  N GKSSL NAL  ++  IV+ IPGTTRD 
Sbjct: 154 DLLDEVVRHFPEENDDDYADDTIKMALIGRPNVGKSSLVNALLGEERVIVSQIPGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +      +G    + DTAG+R+   +    EK  + R+   +E +D++L++ +     I 
Sbjct: 214 IDTSFTRDGQHYVVIDTAGMRKRGKVYEATEKYSVLRSLKAIERSDVVLVVLDGEEGIIE 273

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST 334
             K+I   +       + +  K D    
Sbjct: 274 QDKKIAGYAHEAGRAIVIVVNKWDAVKK 301



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 21/166 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + VAIV D+PG TRD L    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVAIVEDLPGVTRDRLYSKGEWLNHEFYVIDTGGIELGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSD- 330
           + +  +  ++  + ++ A++I+ +  +N ++ I+          F      +    K D 
Sbjct: 66  EPLLVQMRQQAEIAIDEANVIIFM--VNGREGITAADQEVANMLFRSKKPVVLAVNKVDN 123

Query: 331 ------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKK 368
                 LY  Y+      + IS   G G+ +L++++      +   
Sbjct: 124 PDMRELLYEFYSLGAGEPYGISGSHGLGIGDLLDEVVRHFPEENDD 169


>gi|326391582|ref|ZP_08213112.1| ribosome-associated GTPase EngA [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992364|gb|EGD50826.1| ribosome-associated GTPase EngA [Thermoanaerobacter ethanolicus JW
           200]
          Length = 439

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 30/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++   + Q +L E      KI ++G  N GKSSL N +  ++  IV++IPGTTRD 
Sbjct: 156 ELLDEVVKKLPQEEL-EYTEETIKIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKK-- 312
           +      +G    + DTAGIR    I   +E+  + R    +E +D+ LL+ +       
Sbjct: 215 IDTPFSKDGKNYVLIDTAGIRRKSRISESIERYSVLRALAAIERSDICLLMIDATEGPTE 274

Query: 313 ------EISFPKNIDFIFIGTKSDLY------------------STYTEEYDHLISSFTG 348
                   +F      I +  K D                    S  +      IS+ TG
Sbjct: 275 QDTKIAGYAFENGKGIIIVVNKWDAIKKDNNTVNEYTKMVREKLSFISFAPILFISAKTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSH 376
           + +  ++  +  +     K++   + ++
Sbjct: 335 QRVHRVLETVDKVWEEYNKRITTGLLNN 362



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + I+G  N GKS+LFN +  K ++IV D PG TRD +  + +       + DT G+ 
Sbjct: 3   GAIVSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNAEWLDKKFILVDTGGLD 62

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
              +DI+  +   +    ++ +D+IL L +              I      + I +  K 
Sbjct: 63  PNAEDILFSKVRLQVEAAIDASDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNKV 122

Query: 330 DLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNK 365
           D +      Y             IS+  G G+ EL++++   L  +
Sbjct: 123 DSFKEMPPTYYDFFSLGLGNPIPISASNGLGIGELLDEVVKKLPQE 168


>gi|54307962|ref|YP_128982.1| GTP-binding protein EngA [Photobacterium profundum SS9]
 gi|81828838|sp|Q6LU45|DER_PHOPR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|46912388|emb|CAG19180.1| putative GTP-binding protein [Photobacterium profundum SS9]
          Length = 493

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 115/276 (41%), Gaps = 40/276 (14%)

Query: 133 DLISSETEMQRRL-----SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++           +M  ++   +      +++     +     L  ++EE + + 
Sbjct: 121 DGIDADSACAEFWKLGVDAMYQVAAAHNRGVTALMER---ALAPFAESLKGNDEEGLIDL 177

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           SS E +      K D++   ++     +     K+ I+G  N GKS+L N +  ++  +V
Sbjct: 178 SSVEDIE-----KADLTEEDAEAAYKRLQEQPIKLAIIGRPNVGKSTLTNRILGEERVVV 232

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILL 304
            D+PGTTRD + I ++ +G    + DTAG+R   ++    EK  + +T   VE+A+++LL
Sbjct: 233 YDMPGTTRDSIYIPMERDGQEYVLIDTAGVRRRKNMNQVVEKFSVIQTLKAVEDANVVLL 292

Query: 305 LKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEE----------------YD 340
           + +     S +++S            +    K D      +E                  
Sbjct: 293 IIDARENISDQDLSLLGFVLNSGRSLVLAVNKWDGLDNEVKERVKSELDRRLGFIDFARI 352

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           H IS+  G G+  L + +     +  K++  S+ + 
Sbjct: 353 HFISALHGTGVGHLYDSVIEAYKSATKRISTSLLTR 388



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 17/192 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      +LE +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYS 333
           + VE +  +++   +E AD++L L +  +   +S          ++     +  K D   
Sbjct: 65  EGVETKMAEQSLAAIEEADVVLFLVDGRAGLTVSDEAIAKHLRSRDKPTFLVVNKIDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             +   +            ++    G+  L+ +  +  +   K            +  + 
Sbjct: 125 ADSACAEFWKLGVDAMYQVAAAHNRGVTALMERALAPFAESLKGNDEEGLIDLSSVEDIE 184

Query: 385 QTVRYLEMASLN 396
           +     E A   
Sbjct: 185 KADLTEEDAEAA 196


>gi|288924558|ref|ZP_06418495.1| ribosome-associated GTPase EngA [Prevotella buccae D17]
 gi|315607420|ref|ZP_07882416.1| ribosome-associated GTPase EngA [Prevotella buccae ATCC 33574]
 gi|288338345|gb|EFC76694.1| ribosome-associated GTPase EngA [Prevotella buccae D17]
 gi|315250852|gb|EFU30845.1| ribosome-associated GTPase EngA [Prevotella buccae ATCC 33574]
          Length = 437

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E    ++  +  E ADL+L L ++++           I     +  I +  K D  
Sbjct: 65  DDIFEDAIRRQVLVATEEADLVLFLVDVSTGVTDWDEDVAMILRRTKLPVILVANKVDNS 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKL 369
           S Y E  +         H IS+ TG G  +L++ I   +  K ++ 
Sbjct: 125 SEYYEAAEFYKLGLGDPHCISAATGGGTGDLLDLILEKMQPKEEEE 170



 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 11/154 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I   +   +  E+  +  +  ++G  N GKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DLLDLILEKMQPKEEEELEDDIPRFAVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    D  G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYDKFGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRAIENSDVCILMIDATRGIET 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYD 340
                  +    N   + +  K DL    T++  
Sbjct: 274 QDMNIFQLIQKNNKSLVVVVNKWDLVEDKTQKVI 307


>gi|32186993|gb|AAP73740.1| EngA [Escherichia coli]
          Length = 369

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 82  IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 141

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 142 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 201

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 202 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 261

Query: 373 IPSH 376
           + + 
Sbjct: 262 MLTR 265


>gi|310659189|ref|YP_003936910.1| GTPase involved in ribosome synthesis and maintenance [Clostridium
           sticklandii DSM 519]
 gi|308825967|emb|CBH22005.1| GTPase involved in ribosome synthesis and maintenance [Clostridium
           sticklandii]
          Length = 438

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 15/168 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  +  Q    E+  +  K+ I+G  NAGKSS+ N L  ++  IV+ I GTTRD 
Sbjct: 154 DLLDEVVKNFPQDMDTELDEDVVKVAIVGKPNAGKSSILNRLIGEERVIVSPIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++++G      DTAGIR    + E   K  + R +  VE AD++L + +       
Sbjct: 214 IDTYIEMDGKKYLFIDTAGIRRKSKVYENIEKYSVIRAYASVEKADVVLTVIDATEGISE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
                  ++       I +  K DL     E+ +H +  +T +  EEL
Sbjct: 274 QDSKIAGLAHDAGKASIVVVNKWDLI----EKDNHSVKEYTKKIREEL 317



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +A + +AIV D PG TRD +    +       I DT GI  ++
Sbjct: 5   VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRIYAQAEWVSKHFTIIDTGGIEPDS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           ++++ K+  ++  L ++ A +IL + +  +           +        + +  K D  
Sbjct: 65  EELIPKKMRQQAELAMDMAQVILFVVDGKAGLTPSDRDVALMLLKTKKPVLLVVNKVDNK 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINK-IKSILSNKFKKLPFSIP 374
           +   + YD            SS  G G  +L+++ +K+   +   +L   + 
Sbjct: 125 NLPDDFYDFYELGFGEPIPVSSSIGLGTGDLLDEVVKNFPQDMDTELDEDVV 176


>gi|27262166|gb|AAN87364.1| GTP-binding protein [Heliobacillus mobilis]
          Length = 445

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 30/222 (13%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D    S+   +N    L   I +   +G   E   +  KI ++G  N GKSS+ NA+  +
Sbjct: 145 DPIPISATHGMNTGDLLDAVIEALPPEGDE-EDDPDTIKIAVIGKPNVGKSSMVNAILGE 203

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENA 299
           +  IV++IPGTTRD +    + EG    + DTAG+R     D+ VE+  + R+   V+ +
Sbjct: 204 ERVIVSNIPGTTRDAIDTPFEREGKHYVLIDTAGMRRKGKIDESVERYSVMRSLRAVDRS 263

Query: 300 DLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTE-------------- 337
           D++L++ + +             +       + +  K DL     +              
Sbjct: 264 DVVLMVIDASQGVTEQDKKIAGYAHEAGKACVLVLNKWDLVPKDDKTMNRFDKVVRSELG 323

Query: 338 ----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                    +S+ TG+ L +++  +  +     +++P S+ +
Sbjct: 324 FLNYAPTIYVSALTGQRLPKILELVDFVTEQANRRIPTSVIN 365



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L    VAIV D PG TRD L  +         + DT G+    
Sbjct: 9   VAVVGRPNVGKSTLFNRLTGGRVAIVEDRPGVTRDRLYRNAKWLNREFTLVDTGGLEFGA 68

Query: 282 D--IVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDL 331
           D     +   K+    +  AD+IL + +    I +  E    +          +  K + 
Sbjct: 69  DGNPFSEVIYKQAEAAIAEADVILFMVDGKAGITADDETVAAVLRRTKKPVFLVVNKIED 128

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +S   + Y+           IS+  G    +L++ +   L  +  +   
Sbjct: 129 FSQRDKYYEFFALGLGDPIPISATHGMNTGDLLDAVIEALPPEGDEEDD 177


>gi|56909884|dbj|BAD64411.1| EngA subfamily GTP-binding protein [Bacillus clausii KSM-K16]
          Length = 439

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H  +    +   +  K+ ++G  N GKSSL NAL  ++  IV+ IPGTTRD 
Sbjct: 156 DLLDEVVRHFPEENDDDYADDTIKMALIGRPNVGKSSLVNALLGEERVIVSQIPGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +      +G    + DTAG+R+   +    EK  + R+   +E +D++L++ +     I 
Sbjct: 216 IDTSFTRDGQHYVVIDTAGMRKRGKVYEATEKYSVLRSLKAIERSDVVLVVLDGEEGIIE 275

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST 334
             K+I   +       + +  K D    
Sbjct: 276 QDKKIAGYAHEAGRAIVIVVNKWDAVKK 303



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 21/166 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + VAIV D+PG TRD L    +   +   + DT GI   D
Sbjct: 8   VAIVGRPNVGKSTIFNRIVGERVAIVEDLPGVTRDRLYSKGEWLNHEFYVIDTGGIELGD 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSD- 330
           + +  +  ++  + ++ A++I+ +  +N ++ I+          F      +    K D 
Sbjct: 68  EPLLVQMRQQAEIAIDEANVIIFM--VNGREGITAADQEVANMLFRSKKPVVLAVNKVDN 125

Query: 331 ------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKK 368
                 LY  Y+      + IS   G G+ +L++++      +   
Sbjct: 126 PDMRELLYEFYSLGAGEPYGISGSHGLGIGDLLDEVVRHFPEENDD 171


>gi|168334058|ref|ZP_02692274.1| small GTP-binding protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 455

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 96/207 (46%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++ +H  +  +     +  K+ I+G  N GKSSL N +  +D  IV+DI GTTR+ 
Sbjct: 169 DMLDEVCAHFPEEYVEIEDEDAIKVAIVGKPNVGKSSLVNKILGEDRVIVSDIAGTTRES 228

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++ ++G    + DTAG+R+   +   +EK  + RT   +E AD++L+L + N     
Sbjct: 229 VDTEVVIDGQKYVLIDTAGVRKRKKVKEDIEKYSVIRTISAIERADIVLILIDANEGITE 288

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST-------YTEEYDH-----------LISSFTG 348
                  ++       I +  K D           +T+E  +            IS+ TG
Sbjct: 289 QDTKIAGMAHEAGKGSIIVVNKWDAIEKNDKTMNQFTKELVNTLAYMKYAPCAFISALTG 348

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + + +L + IK I  N+  ++   + +
Sbjct: 349 QRVNKLFDTIKIIAQNQTLRISTGVLN 375



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 9/137 (6%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
                   + N   + ++G  N GKS+LFN LAK  ++I+ D PG TRD +  D +    
Sbjct: 5   EDAHTEGTVMNKPVVAVVGRPNVGKSTLFNRLAKAKISIIDDTPGVTRDRIYADAEWLNK 64

Query: 268 LVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPK 318
              + DT GI  +++D++  +  K+  + ++ AD+I+ L ++ +           +    
Sbjct: 65  KFTLVDTGGIEPDSNDVILSQMRKQAEVAIDTADVIIFLVDVKTGVVDSDMHVANMVRKS 124

Query: 319 NIDFIFIGTKSDLYSTY 335
               + +  K D  + Y
Sbjct: 125 QKPVVLVVNKVDDMAKY 141


>gi|163784433|ref|ZP_02179314.1| GTP-binding protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880300|gb|EDP73923.1| GTP-binding protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 451

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 62/312 (19%), Positives = 126/312 (40%), Gaps = 61/312 (19%)

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSG-----ELSSLYGQWIDKLT---HIRSFIE 173
           K  L EA+     I  +TE    +++  +        +   Y    DK+     I+ +  
Sbjct: 92  KTGLTEADKDIARILHKTEKPVYIAVNKVDNPSQEDTIYEFYELGFDKVFPVSTIQKYGV 151

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGK 232
           ADL     E++ ++              +I +   + K  EI + +  K+ I+G  NAGK
Sbjct: 152 ADLLDEVIENIPDY--------------EIQASKEEVKEQEIYKKDEIKVAIIGKPNAGK 197

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGI 289
           SS+ NA+  ++ A+V++IPGTTRDV+   + +E    +  DTAG+R+    D  VE   +
Sbjct: 198 SSILNAITGEERALVSNIPGTTRDVVDTMVKIENKTYRFLDTAGLRKKSKVDYGVEFFSV 257

Query: 290 KRTFLEVENADLILLLKEI-----NSKKEISFPKN---IDFIFIGTKSDLYSTYTE---- 337
            RT   ++ AD+++ + +         ++I+          + +  K D      E    
Sbjct: 258 GRTLDAIKKADVVVHVIDAEQGATEQDQKIAHLSQKYYKPVVIVINKIDRLPKRKEVLNS 317

Query: 338 --------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                              +S+     +++L+  ++ +    +K++             L
Sbjct: 318 LLKQVKEKLYFLPYAPVLTVSAKKHINIDKLLKTVEEVYKQVWKRVSTG---------QL 368

Query: 384 SQTVRYLEMASL 395
           ++ ++ L+    
Sbjct: 369 NKALQQLQSLQA 380



 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 18/159 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y++ I+G  N GKSSLFN +  +  AIV DIPG TRD L    +      ++ DT G  E
Sbjct: 2   YRVAIVGRPNVGKSSLFNRIIGQKKAIVEDIPGITRDRLIQTTEWRNIPFELVDTGGYIE 61

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKN---IDFIFIGTKSD 330
           T DD       K+   E+E+AD  +L+ +       + K+I+   +           K D
Sbjct: 62  TDDDKFAPFIRKQIEKEMEDADAFILVVDSKTGLTEADKDIARILHKTEKPVYIAVNKVD 121

Query: 331 -------LYSTYTEEYD--HLISSFTGEGLEELINKIKS 360
                  +Y  Y   +D    +S+    G+ +L++++  
Sbjct: 122 NPSQEDTIYEFYELGFDKVFPVSTIQKYGVADLLDEVIE 160


>gi|164686350|ref|ZP_02210380.1| hypothetical protein CLOBAR_02788 [Clostridium bartlettii DSM
           16795]
 gi|164601952|gb|EDQ95417.1| hypothetical protein CLOBAR_02788 [Clostridium bartlettii DSM
           16795]
          Length = 450

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  +  +G   E   +  ++ I G  NAGKSS+ N +  ++  IV+ I GTTRD 
Sbjct: 165 DLLDEVVENFPKGLNTEYDEDIIRVAITGKPNAGKSSILNNILGENRVIVSPIAGTTRDA 224

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +    + +G    + DTAGIR    +    EK  + R+   VE AD++L++ +       
Sbjct: 225 IDTYFEKDGQQYLLIDTAGIRRKSKVYERVEKFSVIRSMSAVERADVVLIVIDATEGVTE 284

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                  I+  +    IFI  K DL   
Sbjct: 285 QDTKVAGIAHDEGKGCIFIVNKWDLIEK 312



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 18/170 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   + ++G  N GKS+LFN LA K ++IV D PG TRD +  +++       + DT GI
Sbjct: 12  NRPIVAVVGRPNVGKSTLFNKLAGKRISIVEDTPGVTRDRIFAEVEWLNKYFTLIDTGGI 71

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
            ++  D++  +   +  L V+ A +I+ + +  +          +I    N   +    K
Sbjct: 72  EKDNGDVILSQMRNQAMLAVDMAHIIIFVVDGKAGLTAADKEVAQILRKTNKPVLLAVNK 131

Query: 329 SDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
            D  +     YD           ISS    GL +L++++           
Sbjct: 132 IDSINQMDNIYDFYELGLGNPYAISSANSMGLGDLLDEVVENFPKGLNTE 181


>gi|260913735|ref|ZP_05920211.1| ribosome-associated GTPase EngA [Pasteurella dagmatis ATCC 43325]
 gi|260632274|gb|EEX50449.1| ribosome-associated GTPase EngA [Pasteurella dagmatis ATCC 43325]
          Length = 511

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 28/206 (13%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           +   +++    E  +N  KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I +
Sbjct: 207 LDDALAEETEKEQDKN-IKIAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPM 265

Query: 263 DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISF 316
           + +G    I DTAG+R+   +    EK  + +T   +++A+++LL  +     S +++S 
Sbjct: 266 ERDGQHYTIIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLTIDAREGVSDQDLSL 325

Query: 317 P-----KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEELI 355
                      + +  K      D+      E D           H IS+  G G+  L 
Sbjct: 326 LGFILNAGRSLVIVVNKWDGLNQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLF 385

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLY 381
           + IK   +   +K+  S+ +    + 
Sbjct: 386 DSIKEAYACATQKMTTSMLTRILQMA 411



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 14/142 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L +E AD++L L +  +            +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLTSADIGIANYLRQRQNKITVLVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEEL 354
                + D   + F   GL E+
Sbjct: 124 ---GIDADSHCAEFYQLGLGEI 142


>gi|197302999|ref|ZP_03168047.1| hypothetical protein RUMLAC_01725 [Ruminococcus lactaris ATCC
           29176]
 gi|197297854|gb|EDY32406.1| hypothetical protein RUMLAC_01725 [Ruminococcus lactaris ATCC
           29176]
          Length = 442

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + + +H  +    E   +  ++ I+G  N GKSS+ N L  ++  IV+DI GTTRD 
Sbjct: 156 DMLDAVIAHFPESDGTEEDDDRPRVAIVGKPNVGKSSIINRLLGENRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++   G      DTAG+R  + I    E+  I RT   VE AD++L++ +       
Sbjct: 216 IDTEIVHNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVSAVERADVVLMVIDATEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE---EYD---------------HLISSFTG 348
                  I+  +    I +  K D      +   EY+                 +S+ TG
Sbjct: 276 QDAKIAGIAHERGKGVIIVVNKWDAIEKNDKTMREYEAKIRQVLSYMPYAEIMYVSAMTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + I  ++ N+  ++   + +
Sbjct: 336 QRLPKLYDMIDMVIENQTLRIATGVLN 362



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  D+D       + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADVDWLDREFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + ++ AD+I+ + ++            ++        + +  K D +
Sbjct: 66  RDIILSQMREQAQIAIDTADVIIFITDVKQGLVDSDSKVADMLRRSGKPVVLVVNKVDNF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             Y  +              IS+ +  GL ++++ + +            
Sbjct: 126 DKYMADVYEFYNLGIGDPIPISAASRLGLGDMLDAVIAHFPESDGTEEDD 175


>gi|258515338|ref|YP_003191560.1| GTP-binding protein EngA [Desulfotomaculum acetoxidans DSM 771]
 gi|257779043|gb|ACV62937.1| small GTP-binding protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 443

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 82/358 (22%), Positives = 137/358 (38%), Gaps = 71/358 (19%)

Query: 106 RLANPGEFSRRAFE---NGKIDLLEAESLADLISSETEMQRRLSM-------------EG 149
           RL    E+S R+F     G ID  E     D I S    Q RL++              G
Sbjct: 41  RLYQEAEWSGRSFMLVDTGGIDFQE----NDEIVSNVRHQARLAIEEADLVLFVVDARSG 96

Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS------------KEVLNDIL 197
           + G    +        T +        +FS E++ Q                     +  
Sbjct: 97  LLGSDEEVANILRRTDTPVLLVANKVENFSLEDNPQFLEFYSLGLGEPIPVSAAEGKNTG 156

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + + +      +   +  KI ++G  N GKSSL N++  ++  IV+++PGTTRD 
Sbjct: 157 DLLDQVITLLPLEIKDDYDPDVIKIAVIGRPNVGKSSLVNSILGQERVIVSNVPGTTRDA 216

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI-----N 309
           +    + +     + DTAGIR    I    EK  + R+   ++ +D+ L++ +      +
Sbjct: 217 IDTPFERDDKHYVLIDTAGIRRKSRIYISTEKYSVLRSLKAIDRSDVALIVLDAEEGVTD 276

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
             K I   +  K    I I  K DL     E+ DH +S FT         KI+  +    
Sbjct: 277 QDKRIAGYAHEKGKASIIIINKWDLI----EKDDHTMSIFT--------RKIREEMGFIT 324

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE--NLRLASVSLGKITGC 422
                 I +  R   H     R LE+         +D ++E  +LR+A+ +L  +   
Sbjct: 325 YAPVLFISALTRQRVH-----RVLEL---------VDYVSEQHSLRIATANLNTLIRE 368



 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 20/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +    VAIV   PG TRD L  + +  G    + DT GI  + 
Sbjct: 6   VAIVGRPNVGKSTLFNRIVGARVAIVEGQPGITRDRLYQEAEWSGRSFMLVDTGGIDFQE 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +D +      +  L +E ADL+L + +  S           I    +   + +  K + +
Sbjct: 66  NDEIVSNVRHQARLAIEEADLVLFVVDARSGLLGSDEEVANILRRTDTPVLLVANKVENF 125

Query: 333 STYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKK 368
           S                    +S+  G+   +L++++ ++L  + K 
Sbjct: 126 SLEDNPQFLEFYSLGLGEPIPVSAAEGKNTGDLLDQVITLLPLEIKD 172


>gi|83815424|ref|YP_444485.1| Era/ThdF family GTP-binding protein [Salinibacter ruber DSM 13855]
 gi|83756818|gb|ABC44931.1| GTP-binding protein, Era/ThdF family [Salinibacter ruber DSM 13855]
          Length = 505

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 91/236 (38%), Gaps = 23/236 (9%)

Query: 158 YGQWIDKLT-----HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212
             Q    L      H  + +  D    E    ++   +        L   +S        
Sbjct: 7   LEQIRSSLLGGAGHHRGAPVVYDRRTPERIPPEDDHREPNAPLPHALPAVVSPLSPLLPS 66

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
            +       + I+G  N GKS+LFN L     AIV D PG TRD +  + + +G+ + + 
Sbjct: 67  SQFPLPAVLVAIVGRPNVGKSTLFNRLTGSRQAIVEDTPGVTRDRVYGEAEWKGHTIPLV 126

Query: 273 DTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFI 323
           DT G +  +DD  E+   ++  + +E+AD+IL + ++ +      KEI+    P     +
Sbjct: 127 DTGGYVPRSDDPYERAIREQAEIALEDADVILFVVDVTTGITEMDKEIATVLRPTETPVM 186

Query: 324 FIGTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K+D      +  +            SS    G+++++  +   L     +  
Sbjct: 187 VVANKADNEEREWDASEFYQLGLGEVYPVSSTNKRGVDDMMAALVEELPGTEDEAD 242



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 30/218 (13%)

Query: 195 DILFLKNDISSHISQ--GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +   + + +++ + +  G   E  ++  ++ ++G  NAGKSSL NA    D AIVT+ PG
Sbjct: 219 NKRGVDDMMAALVEELPGTEDEADKDRVQVSLVGKPNAGKSSLVNATLGFDRAIVTERPG 278

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           TTRD +   +  EG  + + DTAG+  R   D VE     R+   +   D+ +L+ +   
Sbjct: 279 TTRDTVQSVVQYEGRDLMLVDTAGMQKRSKADGVEFYATVRSERAIRAGDVCVLVLDATE 338

Query: 311 ---KKEISFPK-----NIDFIFIGTKSDLYST--------------YTEEYDH----LIS 344
              K+++S            +    K DL                 Y    DH     +S
Sbjct: 339 ELHKQDLSVLSEVNEHKKGMVVAVNKWDLVPKDDGTMDQYTKYLRQYLGTLDHVPIVYVS 398

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           + T + + EL++K   +   +  ++  S  +       
Sbjct: 399 AVTKQRVYELLDKALEVAEARATRVQTSALNDVVQAAL 436


>gi|220929546|ref|YP_002506455.1| GTP-binding protein EngA [Clostridium cellulolyticum H10]
 gi|254783147|sp|B8I442|DER_CLOCE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|219999874|gb|ACL76475.1| small GTP-binding protein [Clostridium cellulolyticum H10]
          Length = 441

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 11/161 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H  +    E   +  K+ ++G  NAGKSSL N++  ++  IV++IPGTTRD 
Sbjct: 156 DLLDEVFEHFPEDIASEEEEDVIKVAVVGKPNAGKSSLINSILGENRVIVSNIPGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++ +G      DTAGIR    I   +EK    R++  VE AD+ L++ +       
Sbjct: 216 IDTHVEKDGQKYTFIDTAGIRRRSKISENIEKYSTIRSWTAVERADVCLIMIDAEDGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
                   +  +    I +  K DL    T   +       
Sbjct: 276 QDTKIAGYAHQQGKASIIVINKWDLIEKQTGTLEEYRKVVH 316



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 70/169 (41%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+ FN LA   ++IV D PG TRD +  +++       + DT GI   +
Sbjct: 6   VAVVGRPNVGKSTFFNYLAGSRISIVEDTPGVTRDRIYTEIEWRNTKFTLIDTGGIEPYS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIG--TKSDLY 332
           +DI+ ++  ++  + +E AD+I+ + +         K+  +  +      +    K D  
Sbjct: 66  EDIIMQQMKRQAEIAIETADVIIFMVDAKDGMTATDKEVATMLRKSQKPVVLCVNKVDRV 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                +               SS  G G+ +L++++             
Sbjct: 126 GDPPPDVYEFYNLGMGEMQIISSVHGLGIGDLLDEVFEHFPEDIASEEE 174


>gi|153838555|ref|ZP_01991222.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810]
 gi|149748070|gb|EDM58929.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810]
          Length = 498

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 28/239 (11%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L    +    DL  SE E+ +     E   D     ++ +   ++ +   +     K+ I
Sbjct: 156 LERALAPFFDDLLTSESEEGEIEDLTEF-EDAEIAPDEYTEEEAEAEFQRLQEQPIKLAI 214

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R    I 
Sbjct: 215 IGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRRGRIN 274

Query: 285 ---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD--- 330
              EK  + +T   VE+A+++LL+ +     S +++S            +    K D   
Sbjct: 275 ETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWDGLD 334

Query: 331 --LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             +     +E D           H IS+  G G+  L   I+    +   ++  S+ + 
Sbjct: 335 NEVKENVKKELDRRLGFVDFARIHFISALHGTGVGHLFESIQEAYKSATTRVGTSVLTR 393



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       L+  +   + DT GI  T
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVIDTGGIDGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLY 332
           ++ VE +  +++   ++ AD++L L +  +     + +   +        + +  K D  
Sbjct: 65  EEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPADEAIAAHLRKIEKPAMLVVNKIDGI 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D            ++  G G+  L+ +  +   +       
Sbjct: 125 DADAACADFWQLGVDDMYQIAAAHGRGVTALLERALAPFFDDLLTSES 172


>gi|28897386|ref|NP_796991.1| GTP-binding protein EngA [Vibrio parahaemolyticus RIMD 2210633]
 gi|308094331|ref|ZP_05888700.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AN-5034]
 gi|308095608|ref|ZP_05907112.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus Peru-466]
 gi|308125630|ref|ZP_05776379.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus K5030]
 gi|308126072|ref|ZP_05907679.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AQ4037]
 gi|31340057|sp|Q87S12|DER_VIBPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|28805598|dbj|BAC58875.1| GTP-binding protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086906|gb|EFO36601.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus Peru-466]
 gi|308092889|gb|EFO42584.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AN-5034]
 gi|308106660|gb|EFO44200.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AQ4037]
 gi|308113011|gb|EFO50551.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus K5030]
          Length = 498

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 28/239 (11%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L    +    DL  SE E+ +     E   D     ++ +   ++ +   +     K+ I
Sbjct: 156 LERALAPFFDDLLTSESEEGEIEDLTEF-EDAEIAPDEYTEEEAEAEFQRLQEQPIKLAI 214

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R    I 
Sbjct: 215 IGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRRGRIN 274

Query: 285 ---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD--- 330
              EK  + +T   VE+A+++LL+ +     S +++S            +    K D   
Sbjct: 275 ETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWDGLD 334

Query: 331 --LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             +     +E D           H IS+  G G+  L   I+    +   ++  S+ + 
Sbjct: 335 NEVKENVKKELDRRLGFVDFARIHFISALHGTGVGHLFESIQEAYKSATTRVGTSVLTR 393



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       L+  +   + DT GI  T
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVIDTGGIDGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLY 332
           ++ VE +  +++   ++ AD++L L +  +     + +   +        + +  K D  
Sbjct: 65  EEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPADEAIAAHLRKIEKPAMLVVNKIDGI 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D            ++  G G+  L+ +  +   +       
Sbjct: 125 DADAACADFWQLGVDDMYQIAAAHGRGVTALLERALAPFFDDLLTSES 172


>gi|294506233|ref|YP_003570291.1| GTPases [Salinibacter ruber M8]
 gi|294342561|emb|CBH23339.1| putative GTPases [Salinibacter ruber M8]
          Length = 505

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 18/171 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IR 278
             + I+G  N GKS+LFN L     AIV D PG TRD +  + + +G+ + + DT G + 
Sbjct: 74  VLVAIVGRPNVGKSTLFNRLTGSRQAIVEDTPGVTRDRVYGEAEWKGHTIPLVDTGGYVP 133

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD 330
            +DD  E+   ++  + +E+AD+IL + ++ +      KEI+    P     + +  K+D
Sbjct: 134 RSDDPYERAIREQAEIALEDADVILFVVDVTTGITEMDKEIATVLRPTETPVMVVANKAD 193

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 +  +            SS    G+++++  +   L     +    
Sbjct: 194 NEEREWDASEFYQLGLGEVYPVSSTNKRGVDDMMAALVEELPGTEDEADED 244



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 30/218 (13%)

Query: 195 DILFLKNDISSHISQ--GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +   + + +++ + +  G   E   +  ++ ++G  NAGKSSL NA    D AIVT+ PG
Sbjct: 219 NKRGVDDMMAALVEELPGTEDEADEDRVQVSLVGKPNAGKSSLVNATLGFDRAIVTERPG 278

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           TTRD +   +  EG  + + DTAG+  R   D VE     R+   +   D+ +L+ +   
Sbjct: 279 TTRDTVQSVVQYEGRDLMLVDTAGMQKRSKADGVEFYATVRSERAIRAGDVCVLVLDATE 338

Query: 311 ---KKEISFPK-----NIDFIFIGTKSDLYST--------------YTEEYDH----LIS 344
              K+++S            +    K DL                 Y    DH     +S
Sbjct: 339 ELHKQDLSVLSEVNEHKKGMVVAVNKWDLVPKDDGTMDQYTKYLRQYLGTLDHVPIVYVS 398

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           + T + + EL++K   +   +  ++  S  +       
Sbjct: 399 AVTKQRVYELLDKALEVAEARATRVQTSALNDVVQAAL 436


>gi|145628971|ref|ZP_01784770.1| GTP-binding protein EngA [Haemophilus influenzae 22.1-21]
 gi|144978474|gb|EDJ88197.1| GTP-binding protein EngA [Haemophilus influenzae 22.1-21]
          Length = 504

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 114/282 (40%), Gaps = 33/282 (11%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++       +     E ++        Q ++++    +    ++D +     +  
Sbjct: 123 DGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEQMENVDENNRTSEEEQ 182

Query: 188 SSKEVLNDILFLKN-DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              E   D    ++  +       +L E      KI I+G  N GKS+L N +  +D  +
Sbjct: 183 DEWEQEFDFDSEEDTALIDEALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVV 242

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           V D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   +++A+++L
Sbjct: 243 VYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVL 302

Query: 304 LLKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD---------- 340
           L  +     S +++S            + +  K      D+      E D          
Sbjct: 303 LTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFAR 362

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            H IS+  G G+  L + IK   +   +K+  S+ +    + 
Sbjct: 363 VHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMA 404



 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 14/173 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIVGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L ++ AD++L L +  +            +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
                + D   + F   GL E+     S      + +   +      + ++ +
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEQMENVDE 173


>gi|85712733|ref|ZP_01043778.1| GTP-binding protein EngA [Idiomarina baltica OS145]
 gi|85693465|gb|EAQ31418.1| GTP-binding protein EngA [Idiomarina baltica OS145]
          Length = 479

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 109/272 (40%), Gaps = 53/272 (19%)

Query: 133 DLISSETEMQ--RRLSMEGMSG---ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++ M     L++  + G            +D      +    D+   +E D ++ 
Sbjct: 121 DGIDADSAMADFYSLALGNLYGIAAAHGRGVEHLLDSCFKPLADDYPDVIVPDEPDSEDL 180

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
              E+  D L L                     K+ I+G  N GKS+L N +  +D  +V
Sbjct: 181 EHDEIDYDALPL---------------------KLAIVGRPNVGKSTLTNRILGEDRVVV 219

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILL 304
            D+PGTTRD + I ++ +G    + DTAG+R     D+ +EK  + +T   +E+A+++L 
Sbjct: 220 FDMPGTTRDSVYIPMERDGREYVLIDTAGVRRRGRIDEAIEKYSVVKTLQAIEDANVVLA 279

Query: 305 LKEIN---SKKEI-----SFPKNIDFIFIGTKSD-LYSTYTEEYD--------------- 340
           + +     S +++     +       +    K D L   + +E                 
Sbjct: 280 VIDARETISDQDLNLIGFALNAGRSIVIAVNKWDGLQQDHKDEIKRELDRRLGFVDFARL 339

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           H IS+  G G+  L   ++    +  +++  S
Sbjct: 340 HFISALHGTGVGHLFESVEEAYKSATQRVSTS 371



 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 20/180 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      + +GY   + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYQFIVVDTGGIHGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLYS 333
           + +++   K++   +E AD++L L +         + I+     +      +  K D   
Sbjct: 65  EGIDEVMAKQSLQAIEEADVVLFLVDARDGVTVGDQAIATHLRKQKKKVYLVANKIDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             +   D           I++  G G+E L++   S         P  I   +     L 
Sbjct: 125 ADSAMADFYSLALGNLYGIAAAHGRGVEHLLD---SCFKPLADDYPDVIVPDEPDSEDLE 181


>gi|328472592|gb|EGF43455.1| GTP-binding protein Der [Vibrio parahaemolyticus 10329]
          Length = 498

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 28/239 (11%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L    +    DL  SE E+ +     E   D     ++ +   ++ +   +     K+ I
Sbjct: 156 LERALAPFFDDLLTSESEEGEIEDLTEF-EDAEIAPDEYTEEEAEAEFQRLQEQPIKLAI 214

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R    I 
Sbjct: 215 IGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRRGRIN 274

Query: 285 ---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD--- 330
              EK  + +T   VE+A+++LL+ +     S +++S            +    K D   
Sbjct: 275 ETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWDGLD 334

Query: 331 --LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             +     +E D           H IS+  G G+  L   I+    +   ++  S+ + 
Sbjct: 335 NEVKENVKKELDRRLGFVDFARIHFISALHGTGVGHLFESIQEAYKSATTRVGTSVLTR 393



 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       L+  +   + DT GI  T
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVIDTGGIDGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLY 332
           ++ VE +  +++   ++ AD++L L +  +    +               + +  K D  
Sbjct: 65  EEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTSADEAIAAHLRKIEKPAMLVVNKIDGI 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D            ++  G G+  L+ +  +   +       
Sbjct: 125 DADAACADFWQLGVDDMYQIAAAHGRGVTALLERALAPFFDDLLTSES 172


>gi|126700246|ref|YP_001089143.1| GTP-binding protein EngA [Clostridium difficile 630]
 gi|254976225|ref|ZP_05272697.1| GTP-binding protein EngA [Clostridium difficile QCD-66c26]
 gi|255093612|ref|ZP_05323090.1| GTP-binding protein EngA [Clostridium difficile CIP 107932]
 gi|255101800|ref|ZP_05330777.1| GTP-binding protein EngA [Clostridium difficile QCD-63q42]
 gi|255307668|ref|ZP_05351839.1| GTP-binding protein EngA [Clostridium difficile ATCC 43255]
 gi|255315360|ref|ZP_05356943.1| GTP-binding protein EngA [Clostridium difficile QCD-76w55]
 gi|255518025|ref|ZP_05385701.1| GTP-binding protein EngA [Clostridium difficile QCD-97b34]
 gi|255651141|ref|ZP_05398043.1| GTP-binding protein EngA [Clostridium difficile QCD-37x79]
 gi|260684207|ref|YP_003215492.1| GTP-binding protein EngA [Clostridium difficile CD196]
 gi|260687866|ref|YP_003219000.1| GTP-binding protein EngA [Clostridium difficile R20291]
 gi|306520992|ref|ZP_07407339.1| GTP-binding protein EngA [Clostridium difficile QCD-32g58]
 gi|115251683|emb|CAJ69518.1| putative GTP-binding protein EngA [Clostridium difficile]
 gi|260210370|emb|CBA64741.1| putative GTP-binding protein [Clostridium difficile CD196]
 gi|260213883|emb|CBE05907.1| putative GTP-binding protein [Clostridium difficile R20291]
          Length = 441

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN-------DILFLKNDISS 205
           E++ L  +    +  + + I++   F    D                      L ++I  
Sbjct: 105 EIAQLLRKTKKPVILVVNKIDSQSQFDNIYDFYELGFGTPFAVSGANSMGFGDLLDEIVE 164

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           +   G   E   +  ++ I G  NAGKSS+ N +  ++  IV+ I GTTRD +    +  
Sbjct: 165 NFPAGLDTEYEEDIIRVAITGKPNAGKSSILNKILGEERVIVSPIAGTTRDAIDTYFEKN 224

Query: 266 GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI--------NSKKEI 314
           G    + DTAG+R    I    EK  + R    V+ AD++L++ +              I
Sbjct: 225 GQKFLLIDTAGLRRKSKIYETIEKYSVIRAMSAVDRADVVLIVIDALEGVTEQDTKVAGI 284

Query: 315 SFPKNIDFIFIGTKSDLYST 334
           +  +    IF+  K DL   
Sbjct: 285 AHDEGKGCIFVINKWDLIEK 304



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 18/157 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS++FN  A K ++IV + PG TRD +  +++       + DT GI  ++
Sbjct: 8   VAVVGRPNVGKSTIFNKFAGKRISIVENTPGVTRDRIFAEVEWLDKYFTLVDTGGIEPDS 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +DI+  +   +  L ++ + +IL + +  +          ++        I +  K D  
Sbjct: 68  EDIILSQMRNQAMLAMDMSHVILFIVDGKAGITAADKEIAQLLRKTKKPVILVVNKIDSQ 127

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKS 360
           S +   YD            S     G  +L+++I  
Sbjct: 128 SQFDNIYDFYELGFGTPFAVSGANSMGFGDLLDEIVE 164


>gi|255656611|ref|ZP_05402020.1| GTP-binding protein EngA [Clostridium difficile QCD-23m63]
 gi|296449935|ref|ZP_06891699.1| ribosome-associated GTPase EngA [Clostridium difficile NAP08]
 gi|296878317|ref|ZP_06902325.1| ribosome-associated GTPase EngA [Clostridium difficile NAP07]
 gi|296261205|gb|EFH08036.1| ribosome-associated GTPase EngA [Clostridium difficile NAP08]
 gi|296430615|gb|EFH16454.1| ribosome-associated GTPase EngA [Clostridium difficile NAP07]
          Length = 441

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN-------DILFLKNDISS 205
           E++ L  +    +  + + I++   F    D                      L ++I  
Sbjct: 105 EIAQLLRKTKKPVILVVNKIDSQSQFDNIYDFYELGFGTPFAVSGANSMGFGDLLDEIVE 164

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           +   G   E   +  ++ I G  NAGKSS+ N +  ++  IV+ I GTTRD +    +  
Sbjct: 165 NFPAGLDTEYEEDIIRVAITGKPNAGKSSILNKILGEERVIVSPIAGTTRDAIDTYFEKN 224

Query: 266 GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI--------NSKKEI 314
           G    + DTAG+R    I    EK  + R    V+ AD++L++ +              I
Sbjct: 225 GQKFLLIDTAGLRRKSKIYETIEKYSVIRAMSAVDRADVVLIVIDALEGVTEQDTKVAGI 284

Query: 315 SFPKNIDFIFIGTKSDLYST 334
           +  +    IF+  K DL   
Sbjct: 285 AHDEGKGCIFVINKWDLIEK 304



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 18/157 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS++FN  A K ++IV + PG TRD +  +++       + DT GI  ++
Sbjct: 8   VAVVGRPNVGKSTIFNKFAGKRISIVENTPGVTRDRIFAEVEWLDKYFTLVDTGGIEPDS 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +DI+  +   +  L ++ + +IL + +  +          ++        I +  K D  
Sbjct: 68  EDIILSQMRNQAMLAMDMSHVILFIVDGKAGITAADKEIAQLLRKTKKPVILVVNKIDSQ 127

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKS 360
           S +   YD            S     G  +L+++I  
Sbjct: 128 SQFDNIYDFYELGFGTPFAVSGANSMGFGDLLDEIVE 164


>gi|239827511|ref|YP_002950135.1| GTP-binding protein EngA [Geobacillus sp. WCH70]
 gi|259645879|sp|C5D3F4|DER_GEOSW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|239807804|gb|ACS24869.1| small GTP-binding protein [Geobacillus sp. WCH70]
          Length = 436

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 88/228 (38%), Gaps = 30/228 (13%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   +     L++  +         +  D +    +    D    
Sbjct: 91  NGRDGVTAADEEVAKILHRSNKPVVLAVNKIDNP------EMRDLIYDFYALGFGD---- 140

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
                    S      +  L + ++ H  +    E   +  K  ++G  N GKSSL NA+
Sbjct: 141 -----PYPISGSHGTGLGDLLDAVARHFPKRGQEEYEEDVIKFCLIGRPNVGKSSLVNAI 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+DI GTTRD +      EG    I DTAG+R+   I    EK  + R    +
Sbjct: 196 LGEERVIVSDIAGTTRDAVDTTFVREGQEYVIIDTAGMRKRGKIYESTEKYSVLRALKAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYST 334
           E +D++L++  +N+++ I          +       I +  K D    
Sbjct: 256 ERSDVVLVV--LNAEEGIIEQDKKIAGYAHEAGRGVIIVVNKWDAIEK 301



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHKFYLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           + +  +  ++  + ++ AD+I+ +      + +  E    I    N   +    K D   
Sbjct: 66  EPLLVQIRQQAEIAIDEADVIIFMVNGRDGVTAADEEVAKILHRSNKPVVLAVNKIDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                YD           IS   G GL +L++ +      + ++ 
Sbjct: 126 MRDLIYDFYALGFGDPYPISGSHGTGLGDLLDAVARHFPKRGQEE 170


>gi|83590169|ref|YP_430178.1| small GTP-binding protein domain-containing protein [Moorella
           thermoacetica ATCC 39073]
 gi|123524458|sp|Q2RIV4|DER_MOOTA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|83573083|gb|ABC19635.1| Small GTP-binding protein domain [Moorella thermoacetica ATCC
           39073]
          Length = 438

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 98/275 (35%), Gaps = 33/275 (12%)

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS------MEGMSG--ELSSL 157
           R A          + G I   + + L   + S+ E   + +      ++  +G       
Sbjct: 44  RDAEWCGRQFTLVDTGGIATHQDDPLVARVRSQAEQALKEADVIIFLVDSRTGITADDEE 103

Query: 158 YGQWIDKLTHIRSFIEADL-DFSEEE-----------DVQNFSSKEVLNDILFLKNDISS 205
               + +       +   + DFS+             D    S+   LN    L + +  
Sbjct: 104 IAALLRRSDRPVILVANKVEDFSDPTVTHEFYRLGLGDPVPISAAHGLNTG-DLLDRVVE 162

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            +     GE   +  K+ I+G  N GKSSL N L  ++  IV+D+PGTTRD +   +   
Sbjct: 163 LLPAVPAGE-EGDALKVAIVGRPNVGKSSLVNRLLGEERVIVSDLPGTTRDAVDTYIRRG 221

Query: 266 GYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEI 314
                + DTAG+R    I    E+  + R    VE AD++L++ +               
Sbjct: 222 EREYILIDTAGMRRKSRITVPTERYSVLRALRAVERADVVLVILDGTEGVTEQDKKIAGY 281

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
              K    I +  K DL        DH   +   E
Sbjct: 282 GHEKGKATIIVVNKWDLVPKDERTMDHYREAVRQE 316



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +    VAIV D PG TRD L  D +  G    + DT GI    
Sbjct: 6   VAIIGRPNVGKSTLFNRITGGRVAIVEDTPGVTRDRLYRDAEWCGRQFTLVDTGGIATHQ 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLY 332
           DD +      +    ++ AD+I+ L +       + ++  +  +  +   I +  K + +
Sbjct: 66  DDPLVARVRSQAEQALKEADVIIFLVDSRTGITADDEEIAALLRRSDRPVILVANKVEDF 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           S  T  ++            S+  G    +L++++  +L          
Sbjct: 126 SDPTVTHEFYRLGLGDPVPISAAHGLNTGDLLDRVVELLPAVPAGEEGD 174


>gi|15644195|ref|NP_229245.1| GTP-binding protein EngA [Thermotoga maritima MSB8]
 gi|8134441|sp|Q9X1F8|DER_THEMA RecName: Full=GTPase Der; Short=TmDer; AltName: Full=GTP-binding
           protein EngA
 gi|4982010|gb|AAD36514.1|AE001796_6 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 439

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 111/286 (38%), Gaps = 41/286 (14%)

Query: 121 GKIDLL-EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           GK  +  E ESLAD +   T     ++         +      +    ++  + + L F 
Sbjct: 91  GKRGITKEDESLADFLRKSTVDTILVA---------NKAENLREFEREVKPELYS-LGFG 140

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   V    +  +   +  +   +       +    I +  K+ I+G  N GKS+LFNA+
Sbjct: 141 EPIPVSAEHNINLDTLLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAI 200

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV----EKEGIKRTFLE 295
             K+ A+V+ IPGTTRD +  ++ ++G      DTAG+R    +     EK    R    
Sbjct: 201 LNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260

Query: 296 VENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD------- 340
           +E AD+++++ +              +   +    + +  K DL     + YD       
Sbjct: 261 IEKADVVVIVLDATQGITRQDQRIAGLVERRGRASVVVFNKWDLVEHREKRYDEFTKLFR 320

Query: 341 -----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                         S+  G  ++ +I+ I    ++   K+P S  +
Sbjct: 321 EKLYFIDYSPLIFTSADKGWNIDRVIDAINLAYASYTTKVPSSAIN 366



 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 20/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++I+G  N GKS+LFN L KK  AIV D  G TRD +   ++  G   K+ DT G+ +  
Sbjct: 4   VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
            DI+ ++  + T   +  ADL+L + +          S  +      +D I +  K++  
Sbjct: 64  QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123

Query: 333 STYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +  E               +S+     L+ L+  I   L  K   L  
Sbjct: 124 REFEREVKPELYSLGFGEPIPVSAEHNINLDTLLETIIKKLEEKGLDLES 173


>gi|186682120|ref|YP_001865316.1| GTP-binding protein EngA [Nostoc punctiforme PCC 73102]
 gi|238691263|sp|B2J1L2|DER_NOSP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|186464572|gb|ACC80373.1| small GTP-binding protein [Nostoc punctiforme PCC 73102]
          Length = 456

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 96/207 (46%), Gaps = 30/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++ +HI   +      N  K+ I+G  N GKSSL NA   ++ AIV+ I GTTRD 
Sbjct: 156 ELLDELVNHIPAVED-IPETNEIKVAIVGRPNVGKSSLLNAFVGEERAIVSPISGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI-----N 309
           +   ++ +G   ++ DTAGIR+    +   E   I R F  +  AD++LL+ +       
Sbjct: 215 IDTVIERDGQTYRLIDTAGIRKKKHIEYGTEFFSINRAFKAIRRADVVLLVLDAVDGVTE 274

Query: 310 SKKEIS---FPKNIDFIFIGTKSDLYST-----------------YTEEYD-HLISSFTG 348
             ++++     +    I +  K D                     +TE  +   +S+ +G
Sbjct: 275 QDQKLAGRIIEEGRACIIVVNKWDAVEKDSYTIYDYEKTLQSRLHFTEWAETIFVSALSG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + +E+++  +K+   +  +++  S+ +
Sbjct: 335 QRVEKILELVKTAAESHKRRVSTSVIN 361



 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LA +  AIV D PG TRD   +     G    + DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYMPAFWNGREFLVVDTGGLVFND 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           D        ++    +  A   + + +      ++ +EI+     + +  +    K +  
Sbjct: 66  DTEFLPLIRQQAMTALAEACAAIFVVDGQTGPTSADQEIAEWMRQQRVPVLLAVNKCESP 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILS 363
                +               S+  G G  EL++++ + + 
Sbjct: 126 DQGLMQAAEFWELGLGEPYPISAIHGSGTGELLDELVNHIP 166


>gi|320175074|gb|EFW50187.1| GTP-binding protein EngA [Shigella dysenteriae CDC 74-1112]
          Length = 490

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +E+S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQELSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|297544868|ref|YP_003677170.1| ribosome-associated GTPase EngA [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842643|gb|ADH61159.1| ribosome-associated GTPase EngA [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 439

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 30/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++I   + Q  L E      KI ++G  N GKSSL N +  ++  IV+DIPGTTRD 
Sbjct: 156 ELLDEIVKKLPQEGL-EYSEETIKIAVIGRPNVGKSSLVNKILGEERVIVSDIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEI------ 308
           +      +G    + DTAGIR    I   +E+  + R    +E +D+ LL+ +       
Sbjct: 215 IDTPFSKDGKNYVLIDTAGIRRKSRISESIERYSVLRALTAIERSDICLLMIDAIEGPAE 274

Query: 309 --NSKKEISFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
                   +F      I +  K D                              IS+ TG
Sbjct: 275 QDTKIAGYAFENGKGIIIVVNKWDAIKKNNNTVNEYTKMIREKLSFISFAPILFISAKTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSH 376
           + +  ++  +  +     K++   + ++
Sbjct: 335 QRVHRVLQTVDKVWGEYNKRITTGLLNN 362



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +  K ++IV D PG TRD +  + +       + DT G+  + 
Sbjct: 6   VSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRICGNAEWLNKKFILVDTGGLDPDA 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +DI+  +   +    +E +++IL L +             +I      + I +  K D +
Sbjct: 66  EDIIFSKVRLQVEAAIEASEVILFLVDAKEGLMPEDEEIADILRRAKKEIILVCNKVDNF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                 Y             IS+  G G+ EL+++I   L  +  +      
Sbjct: 126 KELPPTYYDFFSLGLGNPIPISASNGLGIGELLDEIVKKLPQEGLEYSEETI 177


>gi|291166767|gb|EFE28813.1| ribosome-associated GTPase EngA [Filifactor alocis ATCC 35896]
          Length = 437

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 90/207 (43%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + ++ +  +    E  ++  K+ I+G  NAGKSS+ N +  ++  IV+ I GTTRD 
Sbjct: 154 DLLDVVAENFPKDSNMEENKDVIKVAIVGKPNAGKSSIINRILGEERVIVSPIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +     ++       DTAGIR+    D+ +EK  + R++  VE AD++L++ + N     
Sbjct: 214 IDTYFHVKDQEYLFIDTAGIRKKSKIDENIEKYSVIRSYAAVERADVVLIVIDANIGISE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEY------------------DHLISSFTG 348
                  ++       + +  K DL     +                       +S+ TG
Sbjct: 274 QDSKIAGLAHNAGKSTVIVVNKWDLVEKDNKSIQTYTESIRQELPFMSYAPIIFVSTTTG 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           +   ++I  I ++     K++P  + +
Sbjct: 334 QRFGKIIESINAVYQESQKRVPTGLLN 360



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 18/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    VAIV D PG TRD +  + +       + DT GI  ++
Sbjct: 5   VAIVGRPNVGKSTLFNKLVGSRVAIVEDTPGVTRDRIYGEAEWLTDYFTVIDTGGIDNDS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFPK-----NIDFIFIGTKSDLY 332
           DDI+  +  ++  L ++ AD+IL +    +  + ++    +         +    K D  
Sbjct: 65  DDIIPAQMRRQAELAMDTADVILFVVNGRDGVTPQDREIAEQLRRTKKPIVLAVNKVDNK 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           +     YD           IS+  G G+ +L++ +            
Sbjct: 125 NLPDYFYDFYELGVGEPLPISASVGLGIGDLLDVVAENFPKDSNMEE 171


>gi|148825596|ref|YP_001290349.1| GTP-binding protein EngA [Haemophilus influenzae PittEE]
 gi|229847254|ref|ZP_04467357.1| GTP-binding protein EngA [Haemophilus influenzae 7P49H1]
 gi|148715756|gb|ABQ97966.1| GTP-binding protein EngA [Haemophilus influenzae PittEE]
 gi|229809797|gb|EEP45520.1| GTP-binding protein EngA [Haemophilus influenzae 7P49H1]
          Length = 504

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 116/282 (41%), Gaps = 33/282 (11%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++       +     E ++        Q ++++    +    ++D ++    ++ 
Sbjct: 123 DGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENVDENDRTSEEDQ 182

Query: 188 SSKEVLNDILFLKN-DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              E   D    ++  +       +L E      KI I+G  N GKS+L N +  +D  +
Sbjct: 183 DEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVV 242

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           V D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   +++A+++L
Sbjct: 243 VFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVL 302

Query: 304 LLKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD---------- 340
           L  +     S +++S            + +  K      D+      E D          
Sbjct: 303 LTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFAR 362

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            H IS+  G G+  L + IK   +   +K+  S+ +    + 
Sbjct: 363 VHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMA 404



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L ++ AD++L L +  +            +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVLVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELIN 356
                + D   + F   GL E+  
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQ 144


>gi|312110436|ref|YP_003988752.1| ribosome-associated GTPase EngA [Geobacillus sp. Y4.1MC1]
 gi|311215537|gb|ADP74141.1| ribosome-associated GTPase EngA [Geobacillus sp. Y4.1MC1]
          Length = 436

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 88/228 (38%), Gaps = 30/228 (13%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   +     L++  +         +  D +    +    D    
Sbjct: 91  NGRDGVTAADEEVAKILHRSNKPVVLAVNKIDNP------EMRDLIYDFYALGFGD---- 140

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
                    S      +  L + ++ H  +    E   +  K  ++G  N GKSSL NA+
Sbjct: 141 -----PYPISGAHGTGLGDLLDAVARHFPKRGQEEYEEDVIKFCLIGRPNVGKSSLVNAI 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+DI GTTRD +      EG    I DTAG+R+   I    EK  + R    +
Sbjct: 196 LGEERVIVSDIAGTTRDAVDTTFVREGQEYVIIDTAGMRKRGKIYENTEKYSVLRALKAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYST 334
           E +D++L++  +N+++ I          +       I +  K D    
Sbjct: 256 ERSDVVLVV--LNAEEGIIEQDKKIAGYAHEAGRGVIIVVNKWDAIEK 301



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHKFYLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           + +  +  ++  + ++ AD+I+ +      + +  E    I    N   +    K D   
Sbjct: 66  EPLLVQIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKILHRSNKPVVLAVNKIDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                YD           IS   G GL +L++ +      + ++ 
Sbjct: 126 MRDLIYDFYALGFGDPYPISGAHGTGLGDLLDAVARHFPKRGQEE 170


>gi|269140141|ref|YP_003296842.1| GTP-binding protein [Edwardsiella tarda EIB202]
 gi|267985802|gb|ACY85631.1| GTP-binding protein [Edwardsiella tarda EIB202]
 gi|304559975|gb|ADM42639.1| GTP-binding protein EngA [Edwardsiella tarda FL6-60]
          Length = 494

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 110/272 (40%), Gaps = 30/272 (11%)

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           D I +E  +    ++    GE+  +       +T +           EE        +E 
Sbjct: 121 DGIDAEVAIGDFYALG--MGEVHPIAASHGRGVTQLIEDALVPFIPPEEPAPVLSEEEEN 178

Query: 193 LNDILFLKNDISSHISQGKLG-EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
                 L+ D      + +   + I    KI I+G  N GKS+L N +  +D  +V D+P
Sbjct: 179 AAYWAALEADADGEAQEEEDAFDPINQPIKIAIVGRPNVGKSTLTNRILGEDRVVVYDMP 238

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI 308
           GTTRD + I ++ +     + DTAG+R+     D VEK  + +T   +E+A+++LL+ + 
Sbjct: 239 GTTRDSIYIPMERDEREYVLIDTAGVRKRGKVTDTVEKFSVIKTLQAIEDANVVLLVIDA 298

Query: 309 N---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEE----------------YDHLIS 344
               S +++S            + +  K D  S   +E                  H IS
Sbjct: 299 REGISDQDLSLLGFILNSGRSLVVVVNKWDGLSLEVKEQVKDMLDLRLGFVDFARIHFIS 358

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           +  G G+  L   I+    +  +++  ++ + 
Sbjct: 359 ALHGSGVGNLFESIQEAYESATRRVSTAMLTR 390



 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 84/199 (42%), Gaps = 19/199 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ G+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVNGHEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + VE    +++ + +E AD++L L +       + + I+     ++     +  K+D   
Sbjct: 65  NGVETHMAEQSLMAIEEADIVLFLVDARDGLLPADEAIARHLRSRDKATFLVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                 D         H I++  G G+ +LI    +++     + P  + S +       
Sbjct: 125 AEVAIGDFYALGMGEVHPIAASHGRGVTQLIE--DALVPFIPPEEPAPVLSEEEENAAYW 182

Query: 385 QTVRYLEMASLNEKDCGLD 403
             +         E++   D
Sbjct: 183 AALEADADGEAQEEEDAFD 201


>gi|325265091|ref|ZP_08131818.1| ribosome-associated GTPase EngA [Clostridium sp. D5]
 gi|324029781|gb|EGB91069.1| ribosome-associated GTPase EngA [Clostridium sp. D5]
          Length = 442

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++++H  +    E   +  +I I+G  N GKSS+ N L  ++  IV+D+ GTTRD 
Sbjct: 156 DMLDEVTAHFPKSAGEEEEDDRPRIAIVGKPNVGKSSIINKLLGENRVIVSDVAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++  +G      DTAG+R    I    E+  I RT   VE AD++L++ +       
Sbjct: 216 IDTEILHDGKEYIFIDTAGLRRKSRIKEELERYSIIRTVTAVERADVVLIVIDAEEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE---EYDH---------------LISSFTG 348
                  I+  +    I +  K D      +   EYD+                +S+ TG
Sbjct: 276 QDAKIAGIAHERGKGIIIVVNKWDAVEKNDKTMREYDNKIRQVLSYLSYAEIMYVSAVTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L   I  ++ N+  ++   + +
Sbjct: 336 QRLNKLYEMIDIVIENQTLRVATGVLN 362



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 76/170 (44%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVSWLDREFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D++  +  ++  + ++ AD+I+ + ++            ++        I +  K D +
Sbjct: 66  RDVILSQMREQAQIAIDTADVIIFITDVKQGLVDSDSKVADMLRRSGKPVILVVNKVDNF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +  +              IS+ +  GL ++++++ +       +    
Sbjct: 126 DKFMPDVYEFYNLGIGDPVPISAASRLGLGDMLDEVTAHFPKSAGEEEED 175


>gi|261416631|ref|YP_003250314.1| ribosome-associated GTPase EngA [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373087|gb|ACX75832.1| ribosome-associated GTPase EngA [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326129|gb|ADL25330.1| ribosome-associated GTPase EngA [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 475

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 20/213 (9%)

Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN-------DILFLKND 202
           +  + + L  +   K+  + +  E   D  E  +       +            L L ++
Sbjct: 101 LDQQFARLIRKLDKKVILVANKSELQGDRQESYEFLKLGFGQPRTVSALTGYACLSLLDE 160

Query: 203 ISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           + S +     GE       +  ILG  NAGKS+L N L  +D A+V+DIPGTTRD +  D
Sbjct: 161 VVSVLPTPVRGERREERPVRFAILGRPNAGKSTLLNRLLNEDRAVVSDIPGTTRDSIDCD 220

Query: 262 LDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--- 315
             ++G    ++DTAG+R+    +D VE     RT   +  +DL +L+ +     EI    
Sbjct: 221 FVVDGQKFVVTDTAGLRKKARVEDEVEVFSNMRTLESIRRSDLSVLVVDCTRGMEIQDYR 280

Query: 316 -----FPKNIDFIFIGTKSDLYSTYTEE-YDHL 342
                       + +  K D+     ++ +DH+
Sbjct: 281 IITEIRKAGKGLVVVLNKWDILPNKNDKSFDHM 313



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN +  +  A+V+D  G TRD    +   +G+   + DT G    D
Sbjct: 6   VCIIGRPNVGKSSLFNRILGRRAAVVSDRDGVTRDRHYQNAIYKGHEFTVVDTGGFLPDD 65

Query: 282 --DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDL 331
             D++      + F  V  ADL+L + +I    +K +  F +     +   I +  KS+L
Sbjct: 66  SIDVLADSVRAQIFNAVNEADLVLFMVDIRVGITKLDQQFARLIRKLDKKVILVANKSEL 125

Query: 332 YSTYTEEYDH---------LISSFTGEGLEELINKIKSILS 363
                E Y+           +S+ TG     L++++ S+L 
Sbjct: 126 QGDRQESYEFLKLGFGQPRTVSALTGYACLSLLDEVVSVLP 166


>gi|302391816|ref|YP_003827636.1| ribosome-associated GTPase EngA [Acetohalobium arabaticum DSM 5501]
 gi|302203893|gb|ADL12571.1| ribosome-associated GTPase EngA [Acetohalobium arabaticum DSM 5501]
          Length = 438

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 11/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++ SH S  + GE   +  +I ++G  N GKSSL N++  K+  IV D+PGTTRD 
Sbjct: 156 DLLDEVISHFSTEETGEYDEDTIRISVIGRPNVGKSSLVNSILGKERVIVNDVPGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +    ++      I DTAG+R+    +  +EK  + R+   V+ +D+ L++ +       
Sbjct: 216 IDTYFEVGDNQFVIIDTAGMRKRSKVEAGIEKYSVIRSLKAVDRSDVALMVLDATQGITQ 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE 337
                   +  +    +    K DL    T 
Sbjct: 276 QDKKIAGYAHDQGKAMVIAVNKWDLIKKETN 306



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +    ++IV D P  TRD L  + +       + DT G+    
Sbjct: 6   VAIVGRPNVGKSTLFNRIVGNRISIVEDEPSITRDRLYGEGEWLDNHFLVVDTGGLDLDS 65

Query: 282 DIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
           +   K E  ++  L +E A+++L + +  +           +    N   I    K D
Sbjct: 66  EAELKDEVRQQAELAIEEAEVVLFVVDGRTGIKPMDREVANLLRRSNKPIILTVNKVD 123


>gi|298492105|ref|YP_003722282.1| ribosome-associated GTPase EngA ['Nostoc azollae' 0708]
 gi|298234023|gb|ADI65159.1| ribosome-associated GTPase EngA ['Nostoc azollae' 0708]
          Length = 454

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 30/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++ +H+   K      N  K+ I+G  N GKSSL NA   ++ AIV+ I GTTRD 
Sbjct: 156 EILDELITHVPNVKDS-PEDNVIKVAIIGRPNVGKSSLLNAFVGEERAIVSPISGTTRDT 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +  ++   G   ++ DTAGIR+    +   E   I R F  +  AD++LL+ +       
Sbjct: 215 IDTEIVRNGQTYRLIDTAGIRKKKHIEYGTEFFSINRAFKAIRRADVVLLVLDAEDGATE 274

Query: 315 SFPK--------NIDFIFIGTKSDLYST-----------------YTEEYDHLI-SSFTG 348
              K            I +  K D                     +TE  D +  S+ TG
Sbjct: 275 QDQKLAGRITEEGRACIIVVNKWDAVEKDSYTIYDYEKGLEARLHFTEWADIIFVSAVTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + +E+++  +        +++  S+ +
Sbjct: 335 QRVEKILELVNKAAQAHKRRVTTSVVN 361



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LA    AIV D PG TRD              + DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLAGDQTAIVHDEPGVTRDRTYRPAFWGNREFVVVDTGGLVFND 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           D        ++  + +  A   + + +     + + +EI+     + +  +    K +  
Sbjct: 66  DTEFLPLIRQQALMALSEACAAIFVVDGQRGPMPADQEIADWLHQQPVPILLAVNKCESP 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                +            + IS+  G G  E+++++ + + N       ++ 
Sbjct: 126 DQGLIQASGFWELGLGEPYPISAIHGSGTGEILDELITHVPNVKDSPEDNVI 177


>gi|296113385|ref|YP_003627323.1| GTP-binding protein EngA [Moraxella catarrhalis RH4]
 gi|295921079|gb|ADG61430.1| GTP-binding protein EngA [Moraxella catarrhalis RH4]
 gi|326559230|gb|EGE09661.1| GTP-binding protein EngA [Moraxella catarrhalis 46P47B1]
 gi|326559869|gb|EGE10269.1| GTP-binding protein EngA [Moraxella catarrhalis 7169]
 gi|326569645|gb|EGE19697.1| GTP-binding protein EngA [Moraxella catarrhalis BC1]
 gi|326570126|gb|EGE20171.1| GTP-binding protein EngA [Moraxella catarrhalis BC8]
 gi|326570864|gb|EGE20888.1| GTP-binding protein EngA [Moraxella catarrhalis BC7]
 gi|326574414|gb|EGE24356.1| GTP-binding protein EngA [Moraxella catarrhalis 101P30B1]
 gi|326576405|gb|EGE26314.1| GTP-binding protein EngA [Moraxella catarrhalis O35E]
          Length = 472

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 102/249 (40%), Gaps = 17/249 (6%)

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
            ++ A LI +++E+   L      G+   L    +D +          L F E       
Sbjct: 94  VDARAGLIGADSEIAHFL---HTLGKPVFLVANKMDGVHEAAYAEFFALGFGEPYATAAS 150

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             + V N +  L  D+          E+     K+ I+G  N GKS+L N L  +D  +V
Sbjct: 151 HGRGVTNLLESLTADMP---EDMPKDELDSKTLKLAIIGRPNVGKSTLVNRLLGEDRVVV 207

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILL 304
            D+PGTTRD + I  + EG    + DTAG+R     D+ VEK  + +T   +++A++++L
Sbjct: 208 FDMPGTTRDSIYIPFEREGRSYVLIDTAGVRRRGRIDEKVEKFSVVKTLQAIKDANVVVL 267

Query: 305 LKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +       +++     +       +    K D  S   +++  +        +  +  
Sbjct: 268 VIDAKEGIVDQDLHMLGYALDAGRAIVVAINKWDGLSQDQKDFVKIEIDRRFNFVPWVKI 327

Query: 357 KIKSILSNK 365
            + S L   
Sbjct: 328 HLISALYGN 336



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L K   A+V D+ G TRD    D   E     + DT GI E D
Sbjct: 7   VALIGRPNVGKSTLFNQLTKSRQALVADLAGLTRDRQYGDAHFENKSFIVVDTGGIGEMD 66

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSD 330
           D    ++     +++  +  AD+++ + +     I +  EI+            +  K D
Sbjct: 67  DGSGNIDDYMATQSYTAIHEADIVVFVVDARAGLIGADSEIAHFLHTLGKPVFLVANKMD 126

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            ++     E+        +  ++  G G+  L+  + + +     K    
Sbjct: 127 GVHEAAYAEFFALGFGEPYATAASHGRGVTNLLESLTADMPEDMPKDELD 176


>gi|295398957|ref|ZP_06808939.1| ribosome-associated GTPase EngA [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978423|gb|EFG54019.1| ribosome-associated GTPase EngA [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 436

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 88/228 (38%), Gaps = 30/228 (13%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   +     L++  +         +  D +    +    D    
Sbjct: 91  NGRDGVTAADEEVAKILHRSNKPVVLAVNKIDNP------EMRDLIYDFYALGFGD---- 140

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
                    S      +  L + ++ H  +    E   +  K  ++G  N GKSSL NA+
Sbjct: 141 -----PYPISGAHGTGLGDLLDAVARHFPKRGQEEYEEDVIKFCLIGRPNVGKSSLVNAI 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+DI GTTRD +      EG    I DTAG+R+   I    EK  + R    +
Sbjct: 196 LGEERVIVSDIAGTTRDAVDTTFVREGQEYVIIDTAGMRKRGKIYENTEKYSVLRALKAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYST 334
           E +D++L++  +N+++ I          +       I +  K D    
Sbjct: 256 ERSDVVLVV--LNAEEGIIEQDKKIAGYAHEAGRGVIIVVNKWDAIEK 301



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHKFYLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           + +  +  ++  + ++ AD+I+ +      + +  E    I    N   +    K D   
Sbjct: 66  EPLLVQIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKILHRSNKPVVLAVNKIDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                YD           IS   G GL +L++ +      + ++ 
Sbjct: 126 MRDLIYDFYALGFGDPYPISGAHGTGLGDLLDAVARHFPKRGQEE 170


>gi|332288185|ref|YP_004419037.1| GTP-binding protein EngA [Gallibacterium anatis UMN179]
 gi|330431081|gb|AEC16140.1| GTP-binding protein EngA [Gallibacterium anatis UMN179]
          Length = 507

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 28/239 (11%)

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           +  E D DF       +FS  E  +    + +D           E  +   KI I+G  N
Sbjct: 170 AETENDEDFDFALSDTDFSDFEATSINDEIVDDSEDE-DAVDSAETEQKPIKIAIVGRPN 228

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EK 286
            GKS+L N +  +D  +V D+PGTTRD + I ++ +G    I DTAG+R+   +    EK
Sbjct: 229 VGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVTLTVEK 288

Query: 287 EGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD-----LYS 333
             + +T   +++A+++LL  +     S +++S            + +  K D     +  
Sbjct: 289 FSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRALVIVVNKWDGLSQEIKD 348

Query: 334 TYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
               E D           H IS+  G G+  L   +     +  K+   S+ +    + 
Sbjct: 349 NIKSELDRRLDFIDFARVHFISALHGSGVGNLFESVNEAYQSATKRYSTSLLTRILQMA 407



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V + PG TRD       L G    + DT GI  ++
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVANFPGLTRDRKYGQGQLNGTEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             +E++  +++ L ++ AD++L L +  +          +    +    + +  K D
Sbjct: 65  QGIEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIAQYLRRREKTTVVVANKID 121


>gi|289578647|ref|YP_003477274.1| ribosome-associated GTPase EngA [Thermoanaerobacter italicus Ab9]
 gi|289528360|gb|ADD02712.1| ribosome-associated GTPase EngA [Thermoanaerobacter italicus Ab9]
          Length = 439

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 30/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++I   + Q  L E      KI ++G  N GKSSL N +  ++  IV+DIPGTTRD 
Sbjct: 156 ELLDEIVKKLPQEGL-EYSEETIKIAVIGRPNVGKSSLVNKILGEERVIVSDIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEI------ 308
           +      +G    + DTAGIR    I   +E+  + R    +E +D+ LL+ +       
Sbjct: 215 IDTPFSKDGKNYVLIDTAGIRRKSRISESIERYSVLRALTAIERSDICLLMIDAIEGPAE 274

Query: 309 --NSKKEISFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
                   +F      I +  K D                              IS+ TG
Sbjct: 275 QDTKIAGYAFENGKGIIIVVNKWDAIKKNNNTVNEYTKMIREKLSFISFAPILFISAKTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSH 376
           + +  ++  +  +     K++   + ++
Sbjct: 335 QRVHRVLQTVDKVWGEYNKRITTGLLNN 362



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +  K ++IV D PG TRD +  + +       + DT G+  + 
Sbjct: 6   VSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRICGNAEWLNKKFILVDTGGLDPDA 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +DI+  +   +    +E +++IL L +             +I      + I +  K D +
Sbjct: 66  EDIIFSKVRLQVEAAIEASEVILFLVDAKEGLMPEDEEIADILRRAKKEIILVCNKVDNF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                 Y             IS+  G G+ EL+++I   L  +  +      
Sbjct: 126 KELPPTYYDFFSLGLGNPIPISASNGLGIGELLDEIVKKLPQEGLEYSEETI 177


>gi|70726437|ref|YP_253351.1| GTP-binding protein EngA [Staphylococcus haemolyticus JCSC1435]
 gi|123660249|sp|Q4L6I0|DER_STAHJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|68447161|dbj|BAE04745.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 436

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H  +        +  ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD 
Sbjct: 154 DLLDEVVKHFDEETEDSYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   +G    + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 VDTEYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLIVIDAEEGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEEGKAVVIVVNKWDTVDK 301



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + ++ AD+I+ +  +            ++ +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK 368
              + +D           IS   G GL +L++++      + + 
Sbjct: 126 MRNDIFDFYSLGFGDPYPISGSHGLGLGDLLDEVVKHFDEETED 169


>gi|104780244|ref|YP_606742.1| GTP-binding protein EngA [Pseudomonas entomophila L48]
 gi|166225841|sp|Q1IEH7|DER_PSEE4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|95109231|emb|CAK13928.1| GTP-binding protein EngA [Pseudomonas entomophila L48]
          Length = 488

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 86/206 (41%), Gaps = 32/206 (15%)

Query: 199 LKNDISSHISQGKLGEII-----RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           +++ +   +++G+    I     ++G KI I+G  N GKS+L N +  ++  +V D PGT
Sbjct: 167 VEDALDEDVAEGEEATRIPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDQPGT 226

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINS 310
           TRD + I  + +G      DTAG+R+   I    EK  + +T   +++A++++ + +   
Sbjct: 227 TRDSIYIPFERDGEKYTFIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDARE 286

Query: 311 K--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSF 346
                       +       +    K D       +Y                 H IS+ 
Sbjct: 287 GVVDHDLNLLGFALDAGRAVVIALNKWDGMEPGERDYVKTELERRLFFVDFADIHFISAL 346

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS 372
            G G+  L   +++   +   + P S
Sbjct: 347 HGTGVGHLYKSVQAAFMSAVTRWPTS 372



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L K   AIV D+ G TRD    D   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSYILIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ + +E AD +L L +  +          E    +N + I +  K D
Sbjct: 65  VGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKEAILVANKID 121


>gi|75909106|ref|YP_323402.1| GTP-binding protein EngA [Anabaena variabilis ATCC 29413]
 gi|123609166|sp|Q3M929|DER_ANAVT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|75702831|gb|ABA22507.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC
           29413]
          Length = 453

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 32/208 (15%)

Query: 198 FLKNDISSHIS-QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L +++  H+    +L E   N  KI I+G  N GKSSL NA A ++  IV+ I GTTRD
Sbjct: 156 ELLDELIKHLPPTTELEE--NNEIKIAIIGRPNVGKSSLLNAFAGEERVIVSPISGTTRD 213

Query: 257 VLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI----- 308
            +   ++  G   ++ DTAGIR+    D   E   I R F  +  AD++LL+ +      
Sbjct: 214 AIDTFIERNGQNYRLIDTAGIRKKKSIDYGTEFFSINRAFKAIRRADVVLLVIDALDGVT 273

Query: 309 NSKKEIS---FPKNIDFIFIGTKSDLYST-----------------YTEEYD-HLISSFT 347
              ++++     +    + +  K D                     +TE  D   +S+ T
Sbjct: 274 EQDQKLAGRILDEGKACVVVVNKWDAVEKDSYTIYDYEKNLEARLHFTEWADTIYVSAVT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPS 375
           G+ +E+++  +        +++  S+ +
Sbjct: 334 GQRVEKILELVTKANEEHKRRVSTSVIN 361



 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LA +  AIV D PG TRD   +         ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYLPAYWSDREFQVVDTGGLVFND 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLK-----EINSKKEIS---FPKNIDFIFIGTKS--- 329
           D        ++    +  A   + +        ++ +EI+     + +       K    
Sbjct: 66  DTEFLPLIRQQALAALHEASAAIFVVNGQTGPNSADEEIAEWLRQQPVPVFLAVNKCESP 125

Query: 330 DLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILS 363
           D  S    E+        + IS+  G G  EL++++   L 
Sbjct: 126 DQGSIQASEFWELGLGEPYPISAIHGNGTGELLDELIKHLP 166


>gi|145640014|ref|ZP_01795612.1| GTP-binding protein EngA [Haemophilus influenzae PittII]
 gi|145270901|gb|EDK10820.1| GTP-binding protein EngA [Haemophilus influenzae PittII]
          Length = 504

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 114/282 (40%), Gaps = 33/282 (11%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++       +     E ++        Q ++++    +    + D ++    +  
Sbjct: 123 DGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEEEQ 182

Query: 188 SSKEVLNDILFLKN-DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              E   D    ++  +       +L E      KI I+G  N GKS+L N +  +D  +
Sbjct: 183 DEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVV 242

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           V D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   +++A+++L
Sbjct: 243 VFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVL 302

Query: 304 LLKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD---------- 340
           L  +     S +++S            + +  K      D+      E D          
Sbjct: 303 LTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFAR 362

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            H IS+  G G+  L + IK   +   +K+  S+ +    + 
Sbjct: 363 VHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMA 404



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP---------KNIDFIFIGTKSDLY 332
           + VE++  +++ L ++ AD++L L +  +   ++           +N   I +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFLVDARAGLTVADIGIANYLRQRQNKTTIVVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELIN 356
                + D   + F   GL E+  
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQ 144


>gi|15807299|ref|NP_296029.1| GTP-binding protein EngA [Deinococcus radiodurans R1]
 gi|26006746|sp|Q9RS19|DER_DEIRA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|6460115|gb|AAF11852.1|AE002062_5 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 438

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 90/220 (40%), Gaps = 24/220 (10%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            E    +  L + +  ++ +           +I ++G  N GKSSL NA+ + D AIV D
Sbjct: 143 AEHARGLDDLMDRVMKYLPEDDEDVPDIAPIRISLIGRPNVGKSSLLNAITQSDRAIVAD 202

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD-IVEKEGIKRTFLEVENADLILLLKEI 308
           +PGTTRD L ++ D  G    + DTAGIR+  D  +E   I+R+   +E +D+I L+   
Sbjct: 203 LPGTTRDSLDVEWDYGGQRFVLVDTAGIRKKPDTAIEDFAIQRSQAAIERSDVIWLVVNA 262

Query: 309 NSKKE-------ISFPKNIDFIFIGTKSDLYST----------------YTEEYDHLISS 345
               +       +++      I +  K DL                    +       S+
Sbjct: 263 TDIGDHELKLANLAYDSGKPVIVVVNKWDLVPDAELKSTEKDLNQKLHHISFAPRVYTSA 322

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
               G+ +++ +   +      ++  S  +    ++ + Q
Sbjct: 323 INDYGIHDMLAEAMKLYEKWQSRIGTSELNRWLEVWQMKQ 362



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 18/173 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSLFN L  +  A+V D PG TRD     +    + + + DT G+  +
Sbjct: 3   KVAIVGRPNVGKSSLFNRLIGRREAVVADFPGVTRDAKEGLMLYHNHRITLIDTGGL-WS 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D  E+   ++    +E A  ++ + +             +         I    K D  
Sbjct: 62  GDEWEQAIREKAEWAMEGAQAVIFVLDPREGLSAADYEVADWLRRLGKPVIVTANKIDSQ 121

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                L   +   +     IS+    GL++L++++   L    + +P   P  
Sbjct: 122 KHEPYLAELWGLGFGDPVAISAEHARGLDDLMDRVMKYLPEDDEDVPDIAPIR 174


>gi|114046809|ref|YP_737359.1| GTP-binding protein EngA [Shewanella sp. MR-7]
 gi|123131595|sp|Q0HX53|DER_SHESR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|113888251|gb|ABI42302.1| small GTP-binding protein [Shewanella sp. MR-7]
          Length = 488

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 120/271 (44%), Gaps = 36/271 (13%)

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           D I +++      S+    GE+  +       +T++  +  A   ++E   ++    +E 
Sbjct: 121 DGIDADSACAEFWSLG--LGEVYQMAAAQGRGVTNMIEY--ALTPYAEAMGIERQGEEEE 176

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +++  + + +     ++ +   +     K+ I+G  N GKS+L N +  ++  +V D PG
Sbjct: 177 VDERQYTEEE-----AEAEQKRLQDLPIKLAIIGKPNVGKSTLTNRILGEERVVVYDEPG 231

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           TTRD + I ++ +G    I DTAG+R   +  +++EK  + +T   VE+A+++LL+ +  
Sbjct: 232 TTRDSIYIPMERDGREYVIIDTAGVRRRSKVHEVIEKFSVIKTLKAVEDANVVLLIIDAR 291

Query: 310 ---SKKEI-----SFPKNIDFIFIGTKSD-----LYSTYTEEYD-----------HLISS 345
              +++++     +       +    K D     +      E D           H IS+
Sbjct: 292 EGVAEQDLGLLGFALNAGRALVIAVNKWDGIDQGIKDRVKSELDRRLGFIDFARIHFISA 351

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             G G+  L   I+    +  +++  S+ + 
Sbjct: 352 LHGTGVGHLFESIEEAYDSATRRVSTSMLTR 382



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 81/203 (39%), Gaps = 20/203 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + +E +  +++   +E AD++L + +  +     ++S  ++          +  K D   
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSRQKTTFVVANKIDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             +   +           +++  G G+    N I+  L+   + +       +  +    
Sbjct: 125 ADSACAEFWSLGLGEVYQMAAAQGRGV---TNMIEYALTPYAEAMGIERQGEEEEVDERQ 181

Query: 385 QTVRYLEMASLNEKDCGLDIIAE 407
            T    E      +D  + +   
Sbjct: 182 YTEEEAEAEQKRLQDLPIKLAII 204


>gi|24374819|ref|NP_718862.1| GTP-binding protein EngA [Shewanella oneidensis MR-1]
 gi|37999695|sp|Q8EC36|DER_SHEON RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|24349505|gb|AAN56306.1|AE015769_2 GTP-binding protein EngA [Shewanella oneidensis MR-1]
          Length = 487

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 120/271 (44%), Gaps = 36/271 (13%)

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           D I +++      S+    GE+  +       +T++  +  A   ++E   ++    +E 
Sbjct: 121 DGIDADSACAEFWSLG--LGEVYQMAAAQGRGVTNMIEY--ALTPYAEAMGIERQGEEEE 176

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +++  + + +     ++ +   +     K+ I+G  N GKS+L N +  ++  +V D PG
Sbjct: 177 VDERQYTEEE-----AEAEQKRLQDLPIKLAIIGKPNVGKSTLTNRILGEERVVVYDEPG 231

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           TTRD + I ++ +G    I DTAG+R   +  +++EK  + +T   VE+A+++LL+ +  
Sbjct: 232 TTRDSIYIPMERDGREYVIIDTAGVRRRSKVHEVIEKFSVIKTLKAVEDANVVLLIIDAR 291

Query: 310 ---SKKEI-----SFPKNIDFIFIGTKSD-----LYSTYTEEYD-----------HLISS 345
              +++++     +       +    K D     +      E D           H IS+
Sbjct: 292 EGVAEQDLGLLGFALNAGRALVIAVNKWDGIDQGIKDRVKSELDRRLGFIDFARIHFISA 351

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             G G+  L   I+    +  +++  S+ + 
Sbjct: 352 LHGTGVGHLFESIEEAYDSATRRVSTSMLTR 382



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 81/203 (39%), Gaps = 20/203 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + +E +  +++   +E AD++L + +  +     ++S  ++          +  K D   
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSRQKTTFVVANKIDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             +   +           +++  G G+    N I+  L+   + +       +  +    
Sbjct: 125 ADSACAEFWSLGLGEVYQMAAAQGRGV---TNMIEYALTPYAEAMGIERQGEEEEVDERQ 181

Query: 385 QTVRYLEMASLNEKDCGLDIIAE 407
            T    E      +D  + +   
Sbjct: 182 YTEEEAEAEQKRLQDLPIKLAII 204


>gi|319775992|ref|YP_004138480.1| GTP-binding protein [Haemophilus influenzae F3047]
 gi|329123858|ref|ZP_08252415.1| ribosome-associated GTPase EngA [Haemophilus aegyptius ATCC 11116]
 gi|317450583|emb|CBY86800.1| predicted GTP-binding protein [Haemophilus influenzae F3047]
 gi|327468821|gb|EGF14295.1| ribosome-associated GTPase EngA [Haemophilus aegyptius ATCC 11116]
          Length = 504

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 114/282 (40%), Gaps = 33/282 (11%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++       +     E ++        Q ++++    +    + D ++    +  
Sbjct: 123 DGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEEEQ 182

Query: 188 SSKEVLNDILFLKN-DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              E   D    ++  +       +L E      KI I+G  N GKS+L N +  +D  +
Sbjct: 183 DEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVV 242

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           V D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   +++A+++L
Sbjct: 243 VFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVL 302

Query: 304 LLKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD---------- 340
           L  +     S +++S            + +  K      D+      E D          
Sbjct: 303 LTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFAR 362

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            H IS+  G G+  L + IK   +   +K+  S+ +    + 
Sbjct: 363 VHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMA 404



 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L ++ AD++L L +  +            +   +N   I +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKTTIVVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELIN 356
                + D   + F   GL E+  
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQ 144


>gi|239616622|ref|YP_002939944.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1]
 gi|259645881|sp|C5CIV1|DER_KOSOT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|239505453|gb|ACR78940.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1]
          Length = 442

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 33/219 (15%)

Query: 199 LKNDISSHISQGK-----LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           L   I   + +         E   +  K+ I+G  NAGKSSLFN++   D ++VT+IPGT
Sbjct: 156 LLEKIIKTLEEAGHLLDYEPEKEEDNLKVAIIGKPNAGKSSLFNSIVGSDRSLVTEIPGT 215

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDI----VEKEGIKRTFLEVENADLILLLKEI- 308
           TRD++   ++++G  V   DTAG+R    +    VE   + R    +E +D+ +L+ +  
Sbjct: 216 TRDMVDETIEIDGMPVTFIDTAGMRRKSKVGVKNVEYYSVMRAVDAIERSDICILVIDAT 275

Query: 309 ----NSKKEIS---FPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISS 345
               N  + I+     +    I +  KSDL +   +E                     S+
Sbjct: 276 LGISNQDQRIAGLVEKRGKGIITVFNKSDLLNEKHKESLLSSFERELYFIDYSPVVFTSA 335

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             G G++EL++K+  +      ++P  + ++    Y LS
Sbjct: 336 TEGFGIDELLDKLFLVAEKIDLRIPTGLLNNLISRYTLS 374



 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 20/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++I+G  N GKS+LFN L     AI+ D PG TRD +   +  +    ++ DT G+ ++ 
Sbjct: 4   VLIVGRPNVGKSTLFNRLVGGRRAIIDDQPGVTRDFVFGRVFWQHKSFEVVDTCGLFDSP 63

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLY 332
            DI+E++  + T   +   DL+L + +             E         I +  K +  
Sbjct: 64  KDIIEEKMKEVTLALLSEGDLLLFVVDGRKGLTSADMDIAETLRKSKKRVILVANKVENV 123

Query: 333 STYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +T E               IS+  G  ++ L+ KI   L      L +
Sbjct: 124 DKFTLEVLPELYSLGFGEPIPISAEHGLNIDVLLEKIIKTLEEAGHLLDY 173


>gi|210633108|ref|ZP_03297675.1| hypothetical protein COLSTE_01584 [Collinsella stercoris DSM 13279]
 gi|210159262|gb|EEA90233.1| hypothetical protein COLSTE_01584 [Collinsella stercoris DSM 13279]
          Length = 444

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 11/147 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++ + + +    E   +  ++ I+G  NAGKSSLFN +   D +IV++I GTTRD 
Sbjct: 157 DLLDEVVALLPEDAGEEDEPDTLRVAIIGRPNAGKSSLFNKMIGNDRSIVSNIAGTTRDA 216

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++ +G   ++ DTAGIR+   +    E   + R    ++ AD+ LL+ + ++    
Sbjct: 217 IDTVVERDGKRYRMVDTAGIRKKSTVYENIEYYSMVRGLRAIDRADVALLVVDASTGVTE 276

Query: 312 -----KEISFPKNIDFIFIGTKSDLYS 333
                  ++  +    + +  K DL  
Sbjct: 277 QDQKVANLAIERGCALVVLLNKWDLLK 303



 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 20/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS+L N +A+   AIV    G TRD      D  G    + DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLVNRIAQTSDAIVHQSRGVTRDRSYHVADWNGREFTLVDTGGIEPMK 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDL 331
           +DD+       +     E A +IL + + +   ++++ S  +           +  K D 
Sbjct: 66  SDDVFATSIRDQALAAAEEAAVILFVVDGSVGVTEEDESVARMVRKLKKPTFLLVNKLDN 125

Query: 332 YSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPF 371
            +   +                S+  G G  +L++++ ++L     +   
Sbjct: 126 PARENDNLWEFYSLGVGDPVAVSALHGHGTGDLLDEVVALLPEDAGEEDE 175


>gi|300869581|ref|ZP_07114162.1| GTP-binding protein engA [Oscillatoria sp. PCC 6506]
 gi|300332449|emb|CBN59362.1| GTP-binding protein engA [Oscillatoria sp. PCC 6506]
          Length = 454

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 14/149 (9%)

Query: 198 FLKNDISSHISQ-GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L +++ SH+   G+L EI     K+ I+G  N GKSSL NA   +  AIV+ I GTTRD
Sbjct: 156 ELLDELISHLPAVGELPEI--EETKVAIVGRPNVGKSSLLNAFLGETRAIVSPISGTTRD 213

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEI----- 308
            +   ++  G   ++ DTAGIR+  ++    E  GI R F  +  AD++LL+ +      
Sbjct: 214 AIDTVVERNGTTYRLIDTAGIRKKKNVEYGPEFFGINRAFKAIRRADVVLLVIDAVDGVT 273

Query: 309 NSKKEISF---PKNIDFIFIGTKSDLYST 334
           +  ++++     +    + +  K D    
Sbjct: 274 DQDQKLADRISEEGRACVIVVNKWDAIEK 302



 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++ N  A+   +IV D PG TRD    +        ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTIVNRFAESQDSIVHDQPGMTRDRTYKNAYWGDREFQVVDTGGLVFDD 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           +        ++    +  A   + + +          +  E    + +  +    K +  
Sbjct: 66  NTEFLPLIREQAMAALAEASAAIFVVDGQIGLTGGDEAIAEWLRQQRVPVLLAVNKCESE 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILS 363
           +    +               S   G G  EL++++ S L 
Sbjct: 126 TEGLTQAAQFWELGLGEPFPISGIHGNGTGELLDELISHLP 166


>gi|326204998|ref|ZP_08194849.1| ribosome-associated GTPase EngA [Clostridium papyrosolvens DSM
           2782]
 gi|325984864|gb|EGD45709.1| ribosome-associated GTPase EngA [Clostridium papyrosolvens DSM
           2782]
          Length = 441

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 88/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I  H  +    E   +  K+ ++G  NAGKSSL N++  ++  IV++IPGTTRD 
Sbjct: 156 DLLDAIFEHFPEDTDAEEDEDVIKVAVVGKPNAGKSSLINSILGENRVIVSNIPGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++++G      DTAGIR+     + +EK    R++  +E AD+ L++ +       
Sbjct: 216 IDTHVEMDGQKYTFIDTAGIRKRSKINETIEKYSTIRSWTAIERADVCLIMIDAEDGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------------------SSFTG 348
                   +  +    I +  K DL    T   +                     S+ TG
Sbjct: 276 QDTKIAGYAHQQGKASIIVVNKWDLIEKQTGTLEEYRKVVHEKLGFMTYAPVLFISAKTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + + ++   IK +      ++   + +
Sbjct: 336 QRVNKIYELIKFVADQAAFRISTGMLN 362



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+ FN LA   ++IV D PG TRD +  +++       + DT GI   +
Sbjct: 6   VAVVGRPNVGKSTFFNYLAGSRISIVEDTPGVTRDRIYTEIEWRSTKFTLIDTGGIEPYS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIG--TKSDLY 332
           +DI+ ++  ++  + +E AD+I+ + +         K+  +  +      +    K D  
Sbjct: 66  EDIIMQQMKRQAEIAIETADVIVFMVDGKDGMTATDKEVATMLRKSQKPVVLCVNKVDRI 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILS 363
                +               SS  G G+ +L++ I     
Sbjct: 126 GEPPPDVYEFYNLGMGDMQIISSVHGLGMGDLLDAIFEHFP 166


>gi|281421766|ref|ZP_06252765.1| ribosome-associated GTPase EngA [Prevotella copri DSM 18205]
 gi|281404261|gb|EFB34941.1| ribosome-associated GTPase EngA [Prevotella copri DSM 18205]
          Length = 437

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 18/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCSWNGREFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E    K+  +  E ADL+L L ++N+           I     +  I +  K D  
Sbjct: 65  DDIFEDAIRKQVLVATEEADLVLFLVDVNTGLTDWDEDVALILRRAKLPVILVANKVDNS 124

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKK 368
           + Y +  +           IS+ TG G  +L++ I   L +  ++
Sbjct: 125 AEYYQAAEFYKLGLGDPQCISAATGGGTGDLLDMILDKLQDNPEE 169



 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 89/216 (41%), Gaps = 13/216 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I   +       I  +  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DLLDMILDKLQDNPEEAIEEDIPRFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    D  G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYDKFGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRAIENSDVCILMLDATRGIET 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                  +    N   + +  K DL     ++      +   + +   ++      S   
Sbjct: 274 QDMNIFQLIQKNNKSLVVVVNKWDLVEEKNQKVIDTFENAIRKRMAPFVDFPIIFASALT 333

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           K+  F +    + +Y   +   ++  + LNE    +
Sbjct: 334 KQRIFRVLETAKDVYQNRKA--HIGTSKLNEVMLPI 367


>gi|260598897|ref|YP_003211468.1| GTP-binding protein Der [Cronobacter turicensis z3032]
 gi|260218074|emb|CBA32819.1| GTP-binding protein engA [Cronobacter turicensis z3032]
          Length = 492

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 205 IKLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREFVLIDTAGVRK 264

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D+VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 265 RGKITDVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 324

Query: 329 SD-LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D L     +E                 H IS+  G G+  L   ++    +  +++  +
Sbjct: 325 WDGLSQEVKDEVKETLDYRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 384

Query: 373 IPSH 376
           + + 
Sbjct: 385 LLTR 388



 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGAE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTK----- 328
           + VE    +++ L +E AD++L + +  +     + +  K+          +  K     
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSRQKPTFLVANKTDGLD 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKI 358
                +D YS    E  H I++  G G+  L+  +
Sbjct: 125 PDQAVADFYSLGLGEI-HPIAASHGRGVTSLLEHV 158


>gi|81242044|gb|ABB62754.1| putative GTP-binding factor [Shigella dysenteriae Sd197]
          Length = 503

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 216 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 275

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 276 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 335

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 336 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 395

Query: 373 IPSH 376
           + + 
Sbjct: 396 MLTR 399



 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 8   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 67

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 68  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 127

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 128 LVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 171


>gi|145641461|ref|ZP_01797039.1| GTP-binding protein EngA [Haemophilus influenzae R3021]
 gi|145273752|gb|EDK13620.1| GTP-binding protein EngA [Haemophilus influenzae 22.4-21]
          Length = 504

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 114/282 (40%), Gaps = 33/282 (11%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++       +     E ++        Q ++++    +    + D ++    +  
Sbjct: 123 DGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEEEQ 182

Query: 188 SSKEVLNDILFLKN-DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              E   D    ++  +       +L E      KI I+G  N GKS+L N +  +D  +
Sbjct: 183 DEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVV 242

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           V D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   +++A+++L
Sbjct: 243 VFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVL 302

Query: 304 LLKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD---------- 340
           L  +     S +++S            + +  K      D+      E D          
Sbjct: 303 LTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFAR 362

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            H IS+  G G+  L + IK   +   +K+  S+ +    + 
Sbjct: 363 VHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMA 404



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP---------KNIDFIFIGTKSDLY 332
           + VE++  +++ L ++ AD++L L +  +   ++           +N   I +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFLVDARAGLTVADIGIANYLRQRQNKTTIVVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELIN 356
                + D   + F   GL E+  
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQ 144


>gi|16272103|ref|NP_438305.1| GTP-binding protein EngA [Haemophilus influenzae Rd KW20]
 gi|68248744|ref|YP_247856.1| GTP-binding protein EngA [Haemophilus influenzae 86-028NP]
 gi|260581297|ref|ZP_05849114.1| ribosome-associated GTPase EngA [Haemophilus influenzae RdAW]
 gi|1175159|sp|P44536|DER_HAEIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|1573089|gb|AAC21807.1| GTP-binding protein [Haemophilus influenzae Rd KW20]
 gi|68056943|gb|AAX87196.1| GTP-binding protein EngA [Haemophilus influenzae 86-028NP]
 gi|260092046|gb|EEW75992.1| ribosome-associated GTPase EngA [Haemophilus influenzae RdAW]
          Length = 504

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 114/282 (40%), Gaps = 33/282 (11%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++       +     E ++        Q ++++    +    + D ++    +  
Sbjct: 123 DGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEEEQ 182

Query: 188 SSKEVLNDILFLKN-DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              E   D    ++  +       +L E      KI I+G  N GKS+L N +  +D  +
Sbjct: 183 DEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVV 242

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           V D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   +++A+++L
Sbjct: 243 VFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVL 302

Query: 304 LLKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD---------- 340
           L  +     S +++S            + +  K      D+      E D          
Sbjct: 303 LTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFAR 362

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            H IS+  G G+  L + IK   +   +K+  S+ +    + 
Sbjct: 363 VHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMA 404



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L ++ AD++L L +  +            +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELIN 356
                + D   + F   GL E+  
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQ 144


>gi|81246371|gb|ABB67079.1| putative GTP-binding factor [Shigella boydii Sb227]
          Length = 503

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 216 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 275

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 276 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 335

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 336 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 395

Query: 373 IPSH 376
           + + 
Sbjct: 396 MLTR 399



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 8   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 67

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 68  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 127

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 128 LVVNKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 171


>gi|333002306|gb|EGK21870.1| small GTP-binding domain protein [Shigella flexneri K-272]
 gi|333016129|gb|EGK35461.1| small GTP-binding domain protein [Shigella flexneri K-227]
          Length = 490

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|293410925|ref|ZP_06654501.1| ribosome-associated GTPase EngA [Escherichia coli B354]
 gi|291471393|gb|EFF13877.1| ribosome-associated GTPase EngA [Escherichia coli B354]
          Length = 499

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 212 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 271

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 272 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 331

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 332 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 391

Query: 373 IPSH 376
           + + 
Sbjct: 392 MLTR 395



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 4   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 63

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T++ VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 64  IDTGGIDGTENGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 123

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 124 LVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 167


>gi|161950068|ref|YP_404245.2| GTP-binding protein EngA [Shigella dysenteriae Sd197]
 gi|309784738|ref|ZP_07679371.1| small GTP-binding domain protein [Shigella dysenteriae 1617]
 gi|308927108|gb|EFP72582.1| small GTP-binding domain protein [Shigella dysenteriae 1617]
          Length = 490

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|238921035|ref|YP_002934550.1| GTP-binding protein EngA [Edwardsiella ictaluri 93-146]
 gi|259645874|sp|C5BES7|DER_EDWI9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238870604|gb|ACR70315.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 494

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 118/284 (41%), Gaps = 39/284 (13%)

Query: 121 GKIDLLEAE-SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            K D ++AE ++ D  S        ++     G ++ L    +       +   A +   
Sbjct: 118 NKTDGIDAEVAVGDFYSLGMGEVHPIAASHGRG-VTQLIEDALVPFIPQEA--PAPVLSE 174

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           EEE+   ++  E   D    + +        +  + I    KI I+G  N GKS+L N +
Sbjct: 175 EEENAAYWAELEAEADGEAQEEE--------EAFDPINQPIKIAIVGRPNVGKSTLTNRI 226

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEV 296
             +D  +V D+PGTTRD + I ++ +     + DTAG+R+     D VEK  + +T   +
Sbjct: 227 LGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKVTDTVEKFSVIKTLQAI 286

Query: 297 ENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEE---------- 338
           E+A+++LL+ +     S +++S            + +  K D  S   +E          
Sbjct: 287 EDANVVLLVIDARQGISDQDLSLLGFILNSGRSLVVVVNKWDGLSLEVKEQVKDMLDLRL 346

Query: 339 ------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                   H IS+  G G+  L   I+    +  +++  ++ + 
Sbjct: 347 GFVDFARIHFISALHGSGVGNLFESIQEAYESATRRVSTAMLTR 390



 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 19/199 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ G+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVNGHEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + VE    +++ + +E AD++L L +       + + I+     ++     +  K+D   
Sbjct: 65  NGVETHMAEQSLMAIEEADIVLFLVDARDGLLPADEAIARHLRSRDKATFLVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                 D         H I++  G G+ +LI    +++    ++ P  + S +       
Sbjct: 125 AEVAVGDFYSLGMGEVHPIAASHGRGVTQLIE--DALVPFIPQEAPAPVLSEEEENAAYW 182

Query: 385 QTVRYLEMASLNEKDCGLD 403
             +         E++   D
Sbjct: 183 AELEAEADGEAQEEEEAFD 201


>gi|325661996|ref|ZP_08150615.1| GTP-binding protein engA [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331085846|ref|ZP_08334929.1| GTP-binding protein engA [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325471659|gb|EGC74878.1| GTP-binding protein engA [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330406769|gb|EGG86274.1| GTP-binding protein engA [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 442

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +++H  +    E      +I I+G  N GKSS+ N L  ++  IV++I GTTRD 
Sbjct: 156 DMLDAVAAHFPEHSAEEEEDERPRIAIVGKPNVGKSSIINKLVGENRVIVSNIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI------ 308
           +  ++   G      DTAG+R  + I    E+  I RT   VE AD++L++ +       
Sbjct: 216 IDTEITWNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLVVIDAVEGVTE 275

Query: 309 -NSK-KEISFPKNIDFIFIGTKSDLYSTYTE---EYDH---------------LISSFTG 348
            ++K   I+  +    I I  K D      +   EY+                 +S+ TG
Sbjct: 276 QDAKIAGIAHERGKGVIIIVNKWDAIEKNDKTMYEYEKNVRQVLSYMPYAEIMYVSAKTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + I  +L N+  ++   + +
Sbjct: 336 QRLPKLFDMIDMVLENQTLRISTGVLN 362



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 19/163 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  ++        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYAEVTWLDREFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLY 332
            DI+  +  ++  + ++ AD+I+ + ++    + S  K            + +  K D +
Sbjct: 66  KDIILAQMREQAQIAIDTADVIIFITDVRQGLQDSDSKVADMLRRSGKPVVLVVNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNK 365
                +              IS+ +  GL ++++ + +     
Sbjct: 126 QKLMADVYEFYNLGIGDPIPISASSRLGLGDMLDAVAAHFPEH 168


>gi|319898104|ref|YP_004136301.1| gtp-binding protein [Haemophilus influenzae F3031]
 gi|309750447|gb|ADO80431.1| GTP-binding protein EngA [Haemophilus influenzae R2866]
 gi|317433610|emb|CBY81994.1| predicted GTP-binding protein [Haemophilus influenzae F3031]
          Length = 504

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 114/282 (40%), Gaps = 33/282 (11%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++       +     E ++        Q ++++    +    + D ++    +  
Sbjct: 123 DGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEEEQ 182

Query: 188 SSKEVLNDILFLKN-DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              E   D    ++  +       +L E      KI I+G  N GKS+L N +  +D  +
Sbjct: 183 DEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVV 242

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           V D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   +++A+++L
Sbjct: 243 VFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVL 302

Query: 304 LLKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD---------- 340
           L  +     S +++S            + +  K      D+      E D          
Sbjct: 303 LTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFAR 362

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            H IS+  G G+  L + IK   +   +K+  S+ +    + 
Sbjct: 363 VHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMA 404



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L ++ AD++L L +  +            +   +N   I +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKTTIVVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELIN 356
                + D   + F   GL E+  
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQ 144


>gi|17227979|ref|NP_484527.1| GTP-binding protein EngA [Nostoc sp. PCC 7120]
 gi|26006724|sp|Q8YZH7|DER_NOSS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|17129828|dbj|BAB72441.1| GTP binding protein [Nostoc sp. PCC 7120]
          Length = 453

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 95/220 (43%), Gaps = 35/220 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H+      E   N  KI I+G  N GKSSL NA A ++  IV+ I GTTRD 
Sbjct: 156 ELLDELIKHLPPVTELE-ENNEIKIAIIGRPNVGKSSLLNAFAGEERVIVSPISGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI-----N 309
           +   ++ +G   ++ DTAGIR+    D   E   I R F  +  AD++LL+ +       
Sbjct: 215 IDTFIERDGQNYRLIDTAGIRKKKSIDYGTEFFSINRAFKAIRRADVVLLVIDALDGVTE 274

Query: 310 SKKEIS---FPKNIDFIFIGTKSDLYST-----------------YTEEYD-HLISSFTG 348
             ++++     +    + +  K D                     +TE  D   +S+ TG
Sbjct: 275 QDQKLAGRILDEGKACVVVVNKWDAVEKDSYTIYDYEKNLEARLHFTEWADTIYVSAVTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           + +E+++  +        +++  S+ +       L   VR
Sbjct: 335 QRVEKILELVTKANEEHKRRVSTSVIN-----EVLEDAVR 369



 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LA +  AIV D PG TRD   +         ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYLPAYWSDREFQVVDTGGLVFND 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLK-----EINSKKEIS---FPKNIDFIFIGTKS--- 329
           D        ++    +  A   + +        ++ +EI+     + +       K    
Sbjct: 66  DTEFLPLIRQQALAALHEASAAIFVVNGQTGPNSADEEIAEWLRQQPVPVFLAVNKCESP 125

Query: 330 DLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILS 363
           D  S    E+        + IS+  G G  EL++++   L 
Sbjct: 126 DQGSIQASEFWELGLGEPYPISAIHGNGTGELLDELIKHLP 166


>gi|324113005|gb|EGC06981.1| ribosome GTPase EngA [Escherichia fergusonii B253]
          Length = 490

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|300920666|ref|ZP_07137077.1| ribosome-associated GTPase EngA [Escherichia coli MS 115-1]
 gi|300412347|gb|EFJ95657.1| ribosome-associated GTPase EngA [Escherichia coli MS 115-1]
          Length = 499

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 212 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 271

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 272 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 331

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 332 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 391

Query: 373 IPSH 376
           + + 
Sbjct: 392 MLTR 395



 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 4   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 63

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 64  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 123

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 124 LVANKTDGLDPDQAVVDFYSLGLGEIYPIAACHGRGVLSLLEHV 167


>gi|30063903|ref|NP_838074.1| GTP-binding protein EngA [Shigella flexneri 2a str. 2457T]
 gi|110806442|ref|YP_689962.1| GTP-binding protein EngA [Shigella flexneri 5 str. 8401]
 gi|123146827|sp|Q0T208|DER_SHIF8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|30042158|gb|AAP17884.1| putative GTP-binding factor [Shigella flexneri 2a str. 2457T]
 gi|110615990|gb|ABF04657.1| putative GTP-binding factor [Shigella flexneri 5 str. 8401]
 gi|281601913|gb|ADA74897.1| GTP-binding protein engA [Shigella flexneri 2002017]
 gi|313650997|gb|EFS15397.1| small GTP-binding domain protein [Shigella flexneri 2a str. 2457T]
 gi|332754198|gb|EGJ84566.1| small GTP-binding domain protein [Shigella flexneri 4343-70]
 gi|332755561|gb|EGJ85925.1| small GTP-binding domain protein [Shigella flexneri K-671]
 gi|332756305|gb|EGJ86656.1| small GTP-binding domain protein [Shigella flexneri 2747-71]
 gi|332766344|gb|EGJ96554.1| small GTP-binding domain protein [Shigella flexneri 2930-71]
 gi|333001904|gb|EGK21470.1| small GTP-binding domain protein [Shigella flexneri K-218]
 gi|333016427|gb|EGK35758.1| small GTP-binding domain protein [Shigella flexneri K-304]
          Length = 490

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVVNKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|331643131|ref|ZP_08344266.1| ribosome-associated GTPase EngA [Escherichia coli H736]
 gi|331653939|ref|ZP_08354940.1| ribosome-associated GTPase EngA [Escherichia coli M718]
 gi|331678502|ref|ZP_08379177.1| ribosome-associated GTPase EngA [Escherichia coli H591]
 gi|332278336|ref|ZP_08390749.1| conserved hypothetical protein [Shigella sp. D9]
 gi|25328223|pir||E91050 probable GTP-binding factor [imported] - Escherichia coli  (strain
           O157:H7, substrain RIMD 0509952)
 gi|25328252|pir||A85895 probable GTP-binding factor Z3774 [imported] - Escherichia coli
           (strain O157:H7, substrain EDL933)
 gi|12516902|gb|AAG57621.1|AE005480_8 putative GTP-binding factor [Escherichia coli O157:H7 str. EDL933]
 gi|13362843|dbj|BAB36796.1| putative GTP-binding factor [Escherichia coli O157:H7 str. Sakai]
 gi|209763418|gb|ACI80021.1| putative GTP-binding factor [Escherichia coli]
 gi|209763420|gb|ACI80022.1| putative GTP-binding factor [Escherichia coli]
 gi|209763422|gb|ACI80023.1| putative GTP-binding factor [Escherichia coli]
 gi|209763426|gb|ACI80025.1| putative GTP-binding factor [Escherichia coli]
 gi|331039929|gb|EGI12149.1| ribosome-associated GTPase EngA [Escherichia coli H736]
 gi|331048788|gb|EGI20864.1| ribosome-associated GTPase EngA [Escherichia coli M718]
 gi|331074962|gb|EGI46282.1| ribosome-associated GTPase EngA [Escherichia coli H591]
 gi|332100688|gb|EGJ04034.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 503

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 216 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 275

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 276 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 335

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 336 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 395

Query: 373 IPSH 376
           + + 
Sbjct: 396 MLTR 399



 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 8   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 67

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 68  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 127

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 128 LVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 171


>gi|148270478|ref|YP_001244938.1| GTP-binding protein EngA [Thermotoga petrophila RKU-1]
 gi|166225931|sp|A5IMD9|DER_THEP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|147736022|gb|ABQ47362.1| small GTP-binding protein [Thermotoga petrophila RKU-1]
          Length = 439

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 111/286 (38%), Gaps = 41/286 (14%)

Query: 121 GKIDLL-EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           GK  +  E ESLAD +         ++ +              +    ++  +   L F 
Sbjct: 91  GKKGITKEDESLADFLRKSNVDTILVANKT---------ENLREFEREVKPELYG-LGFG 140

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   V    +  +   +  +   +       +    I +  K+ I+G  N GKS+LFNA+
Sbjct: 141 EPIPVSAEHNVNLDVLVETIIRKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAI 200

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV----EKEGIKRTFLE 295
             K+ A+V+ IPGTTRD +  ++ ++G      DTAG+R    +     EK    R    
Sbjct: 201 LNKERALVSPIPGTTRDPVDEEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260

Query: 296 VENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD------- 340
           +E AD+++++ +              +   +    + +  K DL     + YD       
Sbjct: 261 IEKADVVVIVLDATQGITRQDQRIAGLVERRGRASVVVFNKWDLVEHREKRYDEFTKLFR 320

Query: 341 -----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                        IS+  G  ++++I+ I    ++   K+P S  +
Sbjct: 321 EKFYFVDYSPLIFISADKGWNIDKVIDAINLAYASYTTKVPSSAIN 366



 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 20/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++I+G  N GKS+LFN L +K  AIV D  G TRD +   ++  G   K+ DT G+ +  
Sbjct: 4   VLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
            DI+ ++  + T   +  ADL+L + +          S  +     N+D I +  K++  
Sbjct: 64  QDIISQKMKEVTLNMIREADLVLFVVDGKKGITKEDESLADFLRKSNVDTILVANKTENL 123

Query: 333 STYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +  E               +S+     L+ L+  I   L  K   L  
Sbjct: 124 REFEREVKPELYGLGFGEPIPVSAEHNVNLDVLVETIIRKLEEKGLDLES 173


>gi|117624740|ref|YP_853653.1| GTP-binding protein EngA [Escherichia coli APEC O1]
 gi|237705021|ref|ZP_04535502.1| GTP-binding protein EngA [Escherichia sp. 3_2_53FAA]
 gi|91073411|gb|ABE08292.1| probable GTP-binding protein EngA [Escherichia coli UTI89]
 gi|115513864|gb|ABJ01939.1| putative GTP-binding protein EngA [Escherichia coli APEC O1]
 gi|226901387|gb|EEH87646.1| GTP-binding protein EngA [Escherichia sp. 3_2_53FAA]
          Length = 503

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 216 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 275

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 276 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 335

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 336 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 395

Query: 373 IPSH 376
           + + 
Sbjct: 396 MLTR 399



 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 8   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 67

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  S     + +  K+         
Sbjct: 68  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARSGLMPADEAIAKHLRSREKPTF 127

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 128 LVANKTDGLDPDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV 171


>gi|229845438|ref|ZP_04465568.1| GTP-binding protein EngA [Haemophilus influenzae 6P18H1]
 gi|229811634|gb|EEP47333.1| GTP-binding protein EngA [Haemophilus influenzae 6P18H1]
          Length = 504

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 115/282 (40%), Gaps = 33/282 (11%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++       +     E ++        Q ++++    +    + D ++    +  
Sbjct: 123 DGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEEEQ 182

Query: 188 SSKEVLNDILFLKN-DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              E   D    ++  +   +   +L E      KI I+G  N GKS+L N +  +D  +
Sbjct: 183 DEWEQEFDFDSEEDTALIDDVLDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVV 242

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           V D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   +++A+++L
Sbjct: 243 VFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVL 302

Query: 304 LLKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD---------- 340
           L  +     S +++S            + +  K      D+      E D          
Sbjct: 303 LTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFAR 362

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            H IS+  G G+  L + IK   +   +K+  S+ +    + 
Sbjct: 363 VHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMA 404



 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L ++ AD++L L +  +            +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELIN 356
                + D   + F   GL E+  
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQ 144


>gi|113969576|ref|YP_733369.1| GTP-binding protein EngA [Shewanella sp. MR-4]
 gi|117919682|ref|YP_868874.1| GTP-binding protein EngA [Shewanella sp. ANA-3]
 gi|123029832|sp|Q0HKV5|DER_SHESM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225858|sp|A0KUJ9|DER_SHESA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|113884260|gb|ABI38312.1| small GTP-binding protein [Shewanella sp. MR-4]
 gi|117612014|gb|ABK47468.1| small GTP-binding protein [Shewanella sp. ANA-3]
          Length = 488

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 120/271 (44%), Gaps = 36/271 (13%)

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           D I +++      S+    GE+  +       +T++  +  A   ++E   ++    +E 
Sbjct: 121 DGIDADSACAEFWSLG--LGEVYQMAAAQGRGVTNMIEY--ALTPYAEAMGIERQGEEEE 176

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +++  + + +     ++ +   +     K+ I+G  N GKS+L N +  ++  +V D PG
Sbjct: 177 VDERQYTEEE-----AEAEQKRLQDLPIKLAIIGKPNVGKSTLTNRILGEERVVVYDEPG 231

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           TTRD + I ++ +G    I DTAG+R   +  +++EK  + +T   VE+A+++LL+ +  
Sbjct: 232 TTRDSIYIPMERDGREYVIIDTAGVRRRSKVHEVIEKFSVIKTLKAVEDANVVLLIIDAR 291

Query: 310 ---SKKEI-----SFPKNIDFIFIGTKSD-----LYSTYTEEYD-----------HLISS 345
              +++++     +       +    K D     +      E D           H IS+
Sbjct: 292 EGIAEQDLGLLGFALNAGRALVIAVNKWDGIDQGIKDRVKSELDRRLGFIDFARIHFISA 351

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             G G+  L   I+    +  +++  S+ + 
Sbjct: 352 LHGTGVGHLFESIEEAYDSATRRVSTSMLTR 382



 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 81/203 (39%), Gaps = 20/203 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + +E +  +++   +E AD++L + +  +     ++S  ++          +  K D   
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSRQKTTFVVANKIDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             +   +           +++  G G+    N I+  L+   + +       +  +    
Sbjct: 125 ADSACAEFWSLGLGEVYQMAAAQGRGV---TNMIEYALTPYAEAMGIERQGEEEEVDERQ 181

Query: 385 QTVRYLEMASLNEKDCGLDIIAE 407
            T    E      +D  + +   
Sbjct: 182 YTEEEAEAEQKRLQDLPIKLAII 204


>gi|300820819|ref|ZP_07100969.1| ribosome-associated GTPase EngA [Escherichia coli MS 119-7]
 gi|300927126|ref|ZP_07142874.1| ribosome-associated GTPase EngA [Escherichia coli MS 182-1]
 gi|300930151|ref|ZP_07145572.1| ribosome-associated GTPase EngA [Escherichia coli MS 187-1]
 gi|300951784|ref|ZP_07165599.1| ribosome-associated GTPase EngA [Escherichia coli MS 116-1]
 gi|300958859|ref|ZP_07170967.1| ribosome-associated GTPase EngA [Escherichia coli MS 175-1]
 gi|301302868|ref|ZP_07208996.1| ribosome-associated GTPase EngA [Escherichia coli MS 124-1]
 gi|301330398|ref|ZP_07223040.1| ribosome-associated GTPase EngA [Escherichia coli MS 78-1]
 gi|301648266|ref|ZP_07248009.1| ribosome-associated GTPase EngA [Escherichia coli MS 146-1]
 gi|309794442|ref|ZP_07688865.1| ribosome-associated GTPase EngA [Escherichia coli MS 145-7]
 gi|300314511|gb|EFJ64295.1| ribosome-associated GTPase EngA [Escherichia coli MS 175-1]
 gi|300416896|gb|EFK00207.1| ribosome-associated GTPase EngA [Escherichia coli MS 182-1]
 gi|300448981|gb|EFK12601.1| ribosome-associated GTPase EngA [Escherichia coli MS 116-1]
 gi|300461957|gb|EFK25450.1| ribosome-associated GTPase EngA [Escherichia coli MS 187-1]
 gi|300526572|gb|EFK47641.1| ribosome-associated GTPase EngA [Escherichia coli MS 119-7]
 gi|300841803|gb|EFK69563.1| ribosome-associated GTPase EngA [Escherichia coli MS 124-1]
 gi|300843627|gb|EFK71387.1| ribosome-associated GTPase EngA [Escherichia coli MS 78-1]
 gi|301073653|gb|EFK88459.1| ribosome-associated GTPase EngA [Escherichia coli MS 146-1]
 gi|308121898|gb|EFO59160.1| ribosome-associated GTPase EngA [Escherichia coli MS 145-7]
 gi|315256531|gb|EFU36499.1| ribosome-associated GTPase EngA [Escherichia coli MS 85-1]
 gi|324020071|gb|EGB89290.1| ribosome-associated GTPase EngA [Escherichia coli MS 117-3]
          Length = 499

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 212 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 271

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 272 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 331

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 332 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 391

Query: 373 IPSH 376
           + + 
Sbjct: 392 MLTR 395



 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 4   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 63

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 64  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 123

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 124 LVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 167


>gi|56480123|ref|NP_708350.2| GTP-binding protein EngA [Shigella flexneri 2a str. 301]
 gi|161984887|ref|YP_408907.2| GTP-binding protein EngA [Shigella boydii Sb227]
 gi|56383674|gb|AAN44057.2| putative GTP-binding factor [Shigella flexneri 2a str. 301]
          Length = 490

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVVNKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|193068430|ref|ZP_03049393.1| ribosome-associated GTPase EngA [Escherichia coli E110019]
 gi|192958382|gb|EDV88822.1| ribosome-associated GTPase EngA [Escherichia coli E110019]
          Length = 490

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|160946385|ref|ZP_02093594.1| hypothetical protein PEPMIC_00345 [Parvimonas micra ATCC 33270]
 gi|158447501|gb|EDP24496.1| hypothetical protein PEPMIC_00345 [Parvimonas micra ATCC 33270]
          Length = 441

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++I     + K         KI ++G  N GKSSL N +  ++  IV+DI GTTRD 
Sbjct: 155 DLLDEIIKEFPENKYTGEEDEVTKIALIGKPNVGKSSLMNRILGEERMIVSDIAGTTRDS 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN----- 309
           +   ++++G     +DTAG+R   +I    E+  + RT   VE +D+ +LL +       
Sbjct: 215 IDSRVEIDGKTYIFTDTAGLRRKRNITENLERYSVVRTLNAVERSDIAILLIDATEGVTE 274

Query: 310 -SKKEISFPKNIDFIFIG--TKSDLYSTYTEEYD------------------HLISSFTG 348
              K I F K  +   I    K DL     + Y                     IS  TG
Sbjct: 275 QDTKVIGFAKEQNKALIIAVNKWDLIVKDNKTYKAFEDDIRTKLSFVPYAQLVFISVKTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + +++L   IK    N   ++   I +
Sbjct: 335 QRIDKLFEAIKIADENYSTRISTGILN 361



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 19/175 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
               + ++G  N GKS+LFN L  K +AI  D PG TRD L  D + +     + DT G+
Sbjct: 2   ERPLVCVVGRPNVGKSTLFNKLINKRIAITEDTPGVTRDRLYQDAEWQNKHFILCDTGGL 61

Query: 278 R-ETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTK 328
              +DDI+ ++   +  + +ENAD+IL + +     ++  +EIS          +    K
Sbjct: 62  EPNSDDIILQKIKAQADVAMENADVILFVVDGKSGLMDEDREISNYLRRTKKPVVLAVNK 121

Query: 329 SDLYSTYTEEYDHL---------ISSFTGEGLEELINK-IKSILSNKFKKLPFSI 373
            D +    E Y+           IS+  G GL +L+++ IK    NK+      +
Sbjct: 122 VDTHKMPAEVYEFYELGFENLNIISATQGFGLGDLLDEIIKEFPENKYTGEEDEV 176


>gi|325496456|gb|EGC94315.1| putative GTP-binding factor [Escherichia fergusonii ECD227]
          Length = 499

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 212 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 271

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 272 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 331

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 332 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 391

Query: 373 IPSH 376
           + + 
Sbjct: 392 MLTR 395



 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 4   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 63

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 64  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 123

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 124 LVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 167


>gi|315288063|gb|EFU47463.1| ribosome-associated GTPase EngA [Escherichia coli MS 110-3]
 gi|324008519|gb|EGB77738.1| ribosome-associated GTPase EngA [Escherichia coli MS 57-2]
          Length = 499

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 212 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 271

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 272 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 331

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 332 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 391

Query: 373 IPSH 376
           + + 
Sbjct: 392 MLTR 395



 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 4   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 63

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  S     + +  K+         
Sbjct: 64  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARSGLMPADEAIAKHLRSREKPTF 123

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 124 LVANKTDGLDPDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV 167


>gi|300898385|ref|ZP_07116728.1| ribosome-associated GTPase EngA [Escherichia coli MS 198-1]
 gi|300940238|ref|ZP_07154836.1| ribosome-associated GTPase EngA [Escherichia coli MS 21-1]
 gi|300357925|gb|EFJ73795.1| ribosome-associated GTPase EngA [Escherichia coli MS 198-1]
 gi|300454934|gb|EFK18427.1| ribosome-associated GTPase EngA [Escherichia coli MS 21-1]
          Length = 499

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 212 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 271

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 272 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 331

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 332 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 391

Query: 373 IPSH 376
           + + 
Sbjct: 392 MLTR 395



 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 4   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 63

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 64  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 123

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 124 LVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 167


>gi|170767411|ref|ZP_02901864.1| GTP-binding protein EngA [Escherichia albertii TW07627]
 gi|170123745|gb|EDS92676.1| GTP-binding protein EngA [Escherichia albertii TW07627]
          Length = 499

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 212 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 271

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 272 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 331

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 332 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 391

Query: 373 IPSH 376
           + + 
Sbjct: 392 MLTR 395



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 4   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 63

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T++ VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 64  IDTGGIDGTEEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 123

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+ ++
Sbjct: 124 LVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLERV 167


>gi|120598182|ref|YP_962756.1| GTP-binding protein EngA [Shewanella sp. W3-18-1]
 gi|166225859|sp|A1RHQ7|DER_SHESW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|120558275|gb|ABM24202.1| small GTP-binding protein [Shewanella sp. W3-18-1]
          Length = 488

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 118/271 (43%), Gaps = 36/271 (13%)

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           D I +++      S+    GE+  +       +T++  +  A   ++E   ++    +EV
Sbjct: 121 DGIDADSACAEFWSLG--LGEVYQMAASQGRGVTNMIEY--ALTPYAEAMGIERQGEEEV 176

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +++  + + +     ++ +   +     K+ I+G  N GKS+L N +  ++  +V D PG
Sbjct: 177 VDERQYTEEE-----AEAEQKRLQDLPIKLAIIGKPNVGKSTLTNRILGEERVVVYDEPG 231

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN 309
           TTRD + I ++ EG    I DTAG+R    +    EK  + +T   VE+A+++LL+ +  
Sbjct: 232 TTRDSIYIPMEREGREYVIIDTAGVRRRSKVHQVIEKFSVIKTLKAVEDANVVLLIIDAR 291

Query: 310 ---SKKEI-----SFPKNIDFIFIGTKSD-----LYSTYTEEYD-----------HLISS 345
              +++++     +       +    K D     +      E D           H IS+
Sbjct: 292 EGVAEQDLGLLGFALNAGRALVIAVNKWDGIDQGIKDRVKSELDRRLGFIDFARIHFISA 351

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             G G+  L   I+    +  +++  S+ + 
Sbjct: 352 LHGTGVGHLFESIEEAYDSATRRVSTSMLTR 382



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 8/129 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + +E +  +++   +E AD++L + +  +     ++S  ++          +  K D   
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSREKTTFVVANKVDGID 124

Query: 334 TYTEEYDHL 342
             +   +  
Sbjct: 125 ADSACAEFW 133


>gi|320185211|gb|EFW59991.1| GTP-binding protein EngA [Shigella flexneri CDC 796-83]
 gi|332092745|gb|EGI97814.1| small GTP-binding domain protein [Shigella boydii 3594-74]
          Length = 490

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|228475961|ref|ZP_04060669.1| ribosome-associated GTPase EngA [Staphylococcus hominis SK119]
 gi|314936392|ref|ZP_07843739.1| ribosome-associated GTPase EngA [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269784|gb|EEK11264.1| ribosome-associated GTPase EngA [Staphylococcus hominis SK119]
 gi|313655011|gb|EFS18756.1| ribosome-associated GTPase EngA [Staphylococcus hominis subsp.
           hominis C80]
          Length = 436

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 11/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H  +        +  ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD 
Sbjct: 154 DLLDEVVKHFKEEDSDPYDDDIIRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   +G    + DTAG+R+   +    EK  + R    +E ++++LL+ +       
Sbjct: 214 VDTEYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLLVIDAEEGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE 337
                   +  +    + +  K D     T 
Sbjct: 274 QDKRVAGYAHEEGKAMVIVVNKWDAVEKDTN 304



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 17/172 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + ++ AD+I+ +  +            ++ +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQLLYKSKKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             ++ +D           IS   G GL +L++++      +           
Sbjct: 126 MRSDIFDFYSLGFGDPYPISGSHGLGLGDLLDEVVKHFKEEDSDPYDDDIIR 177


>gi|145637903|ref|ZP_01793547.1| GTP-binding protein EngA [Haemophilus influenzae PittHH]
 gi|145268903|gb|EDK08862.1| GTP-binding protein EngA [Haemophilus influenzae PittHH]
          Length = 503

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 113/281 (40%), Gaps = 32/281 (11%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++       +     E ++        Q ++++    +    + D ++    +  
Sbjct: 123 DGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEEEQ 182

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
              E   D    ++      +  +  E      KI I+G  N GKS+L N +  +D  +V
Sbjct: 183 DEWEQEFDFDSEEDTALIDEALEESEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVVV 242

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILL 304
            D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   +++A+++LL
Sbjct: 243 FDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLL 302

Query: 305 LKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD----------- 340
             +     S +++S            + +  K      D+      E D           
Sbjct: 303 TIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFARV 362

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           H IS+  G G+  L + IK   +   +K+  S+ +    + 
Sbjct: 363 HFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMA 403



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L ++ AD++L L +  +            +   +N   I +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKTTIVVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELIN 356
                + D   + F   GL E+  
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQ 144


>gi|89109317|ref|AP_003097.1| predicted GTP-binding protein [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111450|ref|NP_417006.2| GTPase; multicopy suppressor of ftsJ [Escherichia coli str. K-12
           substr. MG1655]
 gi|157156728|ref|YP_001463833.1| GTP-binding protein EngA [Escherichia coli E24377A]
 gi|157161986|ref|YP_001459304.1| GTP-binding protein EngA [Escherichia coli HS]
 gi|161367551|ref|NP_289064.2| GTP-binding protein EngA [Escherichia coli O157:H7 EDL933]
 gi|162139766|ref|NP_311400.2| GTP-binding protein EngA [Escherichia coli O157:H7 str. Sakai]
 gi|168748430|ref|ZP_02773452.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756283|ref|ZP_02781290.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761121|ref|ZP_02786128.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768603|ref|ZP_02793610.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773575|ref|ZP_02798582.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778477|ref|ZP_02803484.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787857|ref|ZP_02812864.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC869]
 gi|168798882|ref|ZP_02823889.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC508]
 gi|170019206|ref|YP_001724160.1| GTP-binding protein EngA [Escherichia coli ATCC 8739]
 gi|170082121|ref|YP_001731441.1| GTP-binding protein [Escherichia coli str. K-12 substr. DH10B]
 gi|188494621|ref|ZP_03001891.1| GTP-binding protein EngA [Escherichia coli 53638]
 gi|191167672|ref|ZP_03029481.1| ribosome-associated GTPase EngA [Escherichia coli B7A]
 gi|193064026|ref|ZP_03045111.1| ribosome-associated GTPase EngA [Escherichia coli E22]
 gi|194427302|ref|ZP_03059852.1| ribosome-associated GTPase EngA [Escherichia coli B171]
 gi|194437572|ref|ZP_03069668.1| ribosome-associated GTPase EngA [Escherichia coli 101-1]
 gi|195936653|ref|ZP_03082035.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. EC4024]
 gi|208814338|ref|ZP_03255667.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821434|ref|ZP_03261754.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399678|ref|YP_002271981.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919988|ref|YP_002294072.1| GTP-binding protein EngA [Escherichia coli SE11]
 gi|217326913|ref|ZP_03442996.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555036|ref|YP_002387949.1| GTP-binding protein EngA [Escherichia coli IAI1]
 gi|218696138|ref|YP_002403805.1| GTP-binding protein EngA [Escherichia coli 55989]
 gi|238901676|ref|YP_002927472.1| putative GTP-binding protein [Escherichia coli BW2952]
 gi|253772595|ref|YP_003035426.1| GTP-binding protein EngA [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162485|ref|YP_003045593.1| GTP-binding protein EngA [Escherichia coli B str. REL606]
 gi|254794457|ref|YP_003079294.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. TW14359]
 gi|256017341|ref|ZP_05431206.1| GTP-binding protein EngA [Shigella sp. D9]
 gi|256021803|ref|ZP_05435668.1| GTP-binding protein EngA [Escherichia sp. 4_1_40B]
 gi|260845141|ref|YP_003222919.1| putative GTP-binding protein Der [Escherichia coli O103:H2 str.
           12009]
 gi|260856605|ref|YP_003230496.1| putative GTP-binding protein Der [Escherichia coli O26:H11 str.
           11368]
 gi|260869200|ref|YP_003235602.1| putative GTP-binding protein Der [Escherichia coli O111:H- str.
           11128]
 gi|261223057|ref|ZP_05937338.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259392|ref|ZP_05951925.1| putative GTP-binding protein Der [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283732|ref|YP_003500550.1| GTP-binding protein engA [Escherichia coli O55:H7 str. CB9615]
 gi|293415776|ref|ZP_06658419.1| ribosome-associated GTPase EngA [Escherichia coli B185]
 gi|293446864|ref|ZP_06663286.1| ribosome-associated GTPase EngA [Escherichia coli B088]
 gi|301022369|ref|ZP_07186258.1| ribosome-associated GTPase EngA [Escherichia coli MS 196-1]
 gi|307139146|ref|ZP_07498502.1| GTP-binding protein EngA [Escherichia coli H736]
 gi|307312494|ref|ZP_07592127.1| ribosome-associated GTPase EngA [Escherichia coli W]
 gi|312973248|ref|ZP_07787420.1| small GTP-binding domain protein [Escherichia coli 1827-70]
 gi|331669257|ref|ZP_08370105.1| ribosome-associated GTPase EngA [Escherichia coli TA271]
 gi|68566316|sp|P0A6P5|DER_ECOLI RecName: Full=GTPase Der; AltName: Full=Double era-like domain
           protein; AltName: Full=GTP-binding protein EngA
 gi|68566317|sp|P0A6P6|DER_ECO57 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166920098|sp|A7ZPV4|DER_ECO24 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166920099|sp|A8A317|DER_ECOHS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037147|sp|B1IWF0|DER_ECOLC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226741138|sp|B7M7L5|DER_ECO8A RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|229784133|sp|B1XAY6|DER_ECODH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238058973|sp|B5Z0Y0|DER_ECO5E RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238058974|sp|B6I583|DER_ECOSE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783153|sp|B7LCQ1|DER_ECO55 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|259645873|sp|C4ZX86|DER_ECOBW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|85675433|dbj|BAA16397.2| predicted GTP-binding protein [Escherichia coli str. K12 substr.
           W3110]
 gi|87082120|gb|AAC75564.2| GTPase; multicopy suppressor of ftsJ [Escherichia coli str. K-12
           substr. MG1655]
 gi|157067666|gb|ABV06921.1| GTP-binding protein EngA [Escherichia coli HS]
 gi|157078758|gb|ABV18466.1| GTP-binding protein EngA [Escherichia coli E24377A]
 gi|169754134|gb|ACA76833.1| small GTP-binding protein [Escherichia coli ATCC 8739]
 gi|169889956|gb|ACB03663.1| predicted GTP-binding protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187770576|gb|EDU34420.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017037|gb|EDU55159.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489820|gb|EDU64923.1| GTP-binding protein EngA [Escherichia coli 53638]
 gi|189003270|gb|EDU72256.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356591|gb|EDU75010.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362188|gb|EDU80607.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368460|gb|EDU86876.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372347|gb|EDU90763.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC869]
 gi|189378586|gb|EDU97002.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC508]
 gi|190902271|gb|EDV62011.1| ribosome-associated GTPase EngA [Escherichia coli B7A]
 gi|192929261|gb|EDV82870.1| ribosome-associated GTPase EngA [Escherichia coli E22]
 gi|194414623|gb|EDX30895.1| ribosome-associated GTPase EngA [Escherichia coli B171]
 gi|194423378|gb|EDX39369.1| ribosome-associated GTPase EngA [Escherichia coli 101-1]
 gi|208735615|gb|EDZ84302.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741557|gb|EDZ89239.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161078|gb|ACI38511.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209913247|dbj|BAG78321.1| putative GTP-binding protein [Escherichia coli SE11]
 gi|217319280|gb|EEC27705.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352870|emb|CAU98669.1| GTPase involved in ribosome synthesis and maintenance [Escherichia
           coli 55989]
 gi|218361804|emb|CAQ99403.1| GTPase involved in ribosome synthesis and maintenance [Escherichia
           coli IAI1]
 gi|238862452|gb|ACR64450.1| predicted GTP-binding protein [Escherichia coli BW2952]
 gi|242378109|emb|CAQ32882.1| 50S ribosomal subunit stability factor [Escherichia coli BL21(DE3)]
 gi|253323639|gb|ACT28241.1| small GTP-binding protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974386|gb|ACT40057.1| GTP-binding protein EngA [Escherichia coli B str. REL606]
 gi|253978553|gb|ACT44223.1| GTP-binding protein EngA [Escherichia coli BL21(DE3)]
 gi|254593857|gb|ACT73218.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Escherichia coli
           O157:H7 str. TW14359]
 gi|257755254|dbj|BAI26756.1| predicted GTP-binding protein Der [Escherichia coli O26:H11 str.
           11368]
 gi|257760288|dbj|BAI31785.1| predicted GTP-binding protein Der [Escherichia coli O103:H2 str.
           12009]
 gi|257765556|dbj|BAI37051.1| predicted GTP-binding protein Der [Escherichia coli O111:H- str.
           11128]
 gi|260448409|gb|ACX38831.1| small GTP-binding protein [Escherichia coli DH1]
 gi|290763605|gb|ADD57566.1| GTP-binding protein engA [Escherichia coli O55:H7 str. CB9615]
 gi|291323694|gb|EFE63122.1| ribosome-associated GTPase EngA [Escherichia coli B088]
 gi|291433424|gb|EFF06403.1| ribosome-associated GTPase EngA [Escherichia coli B185]
 gi|299881282|gb|EFI89493.1| ribosome-associated GTPase EngA [Escherichia coli MS 196-1]
 gi|306907417|gb|EFN37921.1| ribosome-associated GTPase EngA [Escherichia coli W]
 gi|309702843|emb|CBJ02174.1| GTP-binding protein [Escherichia coli ETEC H10407]
 gi|310331843|gb|EFP99078.1| small GTP-binding domain protein [Escherichia coli 1827-70]
 gi|315061830|gb|ADT76157.1| predicted GTP-binding protein [Escherichia coli W]
 gi|315137135|dbj|BAJ44294.1| GTP-binding protein engA [Escherichia coli DH1]
 gi|315615770|gb|EFU96402.1| small GTP-binding domain protein [Escherichia coli 3431]
 gi|320180501|gb|EFW55432.1| GTP-binding protein EngA [Shigella boydii ATCC 9905]
 gi|320188844|gb|EFW63503.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. EC1212]
 gi|320200075|gb|EFW74664.1| GTP-binding protein EngA [Escherichia coli EC4100B]
 gi|320640855|gb|EFX10343.1| GTP-binding protein Der [Escherichia coli O157:H7 str. G5101]
 gi|320646298|gb|EFX15225.1| GTP-binding protein Der [Escherichia coli O157:H- str. 493-89]
 gi|320651803|gb|EFX20183.1| GTP-binding protein Der [Escherichia coli O157:H- str. H 2687]
 gi|320657189|gb|EFX24998.1| GTP-binding protein Der [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662795|gb|EFX30127.1| GTP-binding protein Der [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667599|gb|EFX34514.1| GTP-binding protein Der [Escherichia coli O157:H7 str. LSU-61]
 gi|323156165|gb|EFZ42324.1| small GTP-binding domain protein [Escherichia coli EPECa14]
 gi|323159381|gb|EFZ45366.1| small GTP-binding domain protein [Escherichia coli E128010]
 gi|323170218|gb|EFZ55871.1| small GTP-binding domain protein [Escherichia coli LT-68]
 gi|323177365|gb|EFZ62953.1| small GTP-binding domain protein [Escherichia coli 1180]
 gi|323184428|gb|EFZ69803.1| small GTP-binding domain protein [Escherichia coli 1357]
 gi|323377589|gb|ADX49857.1| ribosome-associated GTPase EngA [Escherichia coli KO11]
 gi|323936404|gb|EGB32694.1| ribosome-associated GTPase EngA [Escherichia coli E1520]
 gi|323941227|gb|EGB37412.1| ribosome GTPase EngA [Escherichia coli E482]
 gi|323944733|gb|EGB40800.1| ribosome-associated GTPase EngA [Escherichia coli H120]
 gi|323971076|gb|EGB66324.1| ribosome GTPase EngA [Escherichia coli TA007]
 gi|324118145|gb|EGC12042.1| ribosome GTPase EngA [Escherichia coli E1167]
 gi|326340309|gb|EGD64113.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. 1125]
 gi|326344993|gb|EGD68737.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. 1044]
 gi|331064451|gb|EGI36362.1| ribosome-associated GTPase EngA [Escherichia coli TA271]
 gi|332344383|gb|AEE57717.1| conserved hypothetical protein [Escherichia coli UMNK88]
 gi|333000699|gb|EGK20275.1| small GTP-binding domain protein [Shigella flexneri VA-6]
          Length = 490

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|326791376|ref|YP_004309197.1| ribosome-associated GTPase EngA [Clostridium lentocellum DSM 5427]
 gi|326542140|gb|ADZ83999.1| ribosome-associated GTPase EngA [Clostridium lentocellum DSM 5427]
          Length = 441

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 90/207 (43%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++ S+           +  ++ I+G  N GKSSL N +  ++  IV++I GTTRD 
Sbjct: 156 DMLDEVVSYFPDEDAEAEEDDKIRVAIIGKPNVGKSSLVNKIVGEERVIVSNIAGTTRDS 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++ +EG    + DTAGIR    I   +EK  I RT   ++ AD++L+L +       
Sbjct: 216 VDTEVTIEGQEYVLIDTAGIRRRSKIKENIEKYSIIRTIAAIDRADVVLILIDAEEGITE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------------------ISSFTG 348
                  ++       I +  K D      +  +                    IS+ TG
Sbjct: 276 QDTKIAGMAHEAGKGCIIVVNKWDAIEKDDKTMNAYLKKITNTLAYMQYAPCMFISALTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + + +L + I +I  N+ +++   + +
Sbjct: 336 QRIPKLFDTIYAIAQNQSQRISTGVLN 362



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L K   +IV D PG TRD +  +++   +   I DT GI  ++
Sbjct: 6   VAVIGRPNVGKSTLFNRLTKSKTSIVDDTPGVTRDRIYGEVEWLNHKFTIIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            DI+  +  ++    +E+AD+I+ L ++ +           +    +   + +  K D
Sbjct: 66  TDIILSQMRRQAEAAIESADVIIFLVDVKTGMTDADTHVANMLRKSHKPVVLVVNKVD 123


>gi|261417942|ref|YP_003251624.1| GTP-binding protein EngA [Geobacillus sp. Y412MC61]
 gi|297529610|ref|YP_003670885.1| ribosome-associated GTPase EngA [Geobacillus sp. C56-T3]
 gi|319767246|ref|YP_004132747.1| ribosome-associated GTPase EngA [Geobacillus sp. Y412MC52]
 gi|261374399|gb|ACX77142.1| ribosome-associated GTPase EngA [Geobacillus sp. Y412MC61]
 gi|297252862|gb|ADI26308.1| ribosome-associated GTPase EngA [Geobacillus sp. C56-T3]
 gi|317112112|gb|ADU94604.1| ribosome-associated GTPase EngA [Geobacillus sp. Y412MC52]
          Length = 436

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 32/229 (13%)

Query: 120 NGKIDLLEA-ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           NG+  +  A E +A L+   +     L++  +         +  D +    +     L F
Sbjct: 91  NGRDGVTAADEEVAKLLR-RSNKPVVLAVNKIDNP------EMRDLIYDFYA-----LGF 138

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E   +    S      +  L + +  H  +G   E   +  K  ++G  N GKSSL NA
Sbjct: 139 GEPYPI----SGAHGTGLGDLLDAVVRHFPKGGGQEYEEDVIKFCLIGRPNVGKSSLVNA 194

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLE 295
           +  ++  IV+DI GTTRD +      EG    I DTAG+R+   I    EK  + R    
Sbjct: 195 ILGEERVIVSDIAGTTRDAVDTSFVREGQEYVIIDTAGMRKRGKIYESTEKYSVLRALRA 254

Query: 296 VENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYST 334
           +E +D++L++  +N+++ I          +       I +  K D    
Sbjct: 255 IERSDVVLVV--LNAEEGIIEQDKKIAGYAHEAGRGVILVVNKWDAIEK 301



 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSRAEWLNHSFYLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           + +  +  ++  + ++ AD+I+ +      + +  E    +    N   +    K D   
Sbjct: 66  EPLLVQIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKLLRRSNKPVVLAVNKIDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                YD           IS   G GL +L++ +         + 
Sbjct: 126 MRDLIYDFYALGFGEPYPISGAHGTGLGDLLDAVVRHFPKGGGQE 170


>gi|210612261|ref|ZP_03289209.1| hypothetical protein CLONEX_01409 [Clostridium nexile DSM 1787]
 gi|210151635|gb|EEA82642.1| hypothetical protein CLONEX_01409 [Clostridium nexile DSM 1787]
          Length = 442

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++     +    E      +I I+G  N GKSS+ N L  ++  IV+D+ GTTRD 
Sbjct: 156 DMLDEVVKFFPERNATEEEDERPRIAIVGKPNVGKSSIVNKLLGENRVIVSDVAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI------ 308
           +   +   G      DTAG+R  + I    E+  I RT   VE AD++L++ +       
Sbjct: 216 IDTAIKYHGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLMVIDAVEGITE 275

Query: 309 -NSK-KEISFPKNIDFIFIGTKSDLYSTYTE---EYDH---------------LISSFTG 348
            ++K   I+  +    I +  K D    + +   EY+                 +S+ TG
Sbjct: 276 QDAKIAGIAHERGKGIIIVVNKWDAIEKHDKTMYEYEKKIRQTLAYMPYAEIMYVSAATG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L   I  ++ N+  ++   + +
Sbjct: 336 QRLNKLYEMIDVVMENQTLRVATGVLN 362



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  ++        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYAEVTWLDKEFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + ++ AD+I+        L + +SK  ++        + +  K D +
Sbjct: 66  KDIILSQMREQAQIAIDTADVIVFITDVRQGLVDADSKVADMLRRSGKPVVLVVNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                +              IS+ +  G+ ++++++      +       
Sbjct: 126 QKLMPDVYEFYNLGIGDPIPISAASRLGIGDMLDEVVKFFPERNATEEED 175


>gi|218548052|ref|YP_002381843.1| GTP-binding protein EngA [Escherichia fergusonii ATCC 35469]
 gi|331684159|ref|ZP_08384755.1| ribosome-associated GTPase EngA [Escherichia coli H299]
 gi|226741141|sp|B7LKC7|DER_ESCF3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|218355593|emb|CAQ88204.1| GTPase involved in ribosome synthesis and maintenance [Escherichia
           fergusonii ATCC 35469]
 gi|323967959|gb|EGB63371.1| ribosome GTPase EngA [Escherichia coli M863]
 gi|327252218|gb|EGE63890.1| small GTP-binding domain protein [Escherichia coli STEC_7v]
 gi|331079111|gb|EGI50313.1| ribosome-associated GTPase EngA [Escherichia coli H299]
          Length = 490

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|170681267|ref|YP_001744699.1| GTP-binding protein EngA [Escherichia coli SMS-3-5]
 gi|218706014|ref|YP_002413533.1| GTP-binding protein EngA [Escherichia coli UMN026]
 gi|293405952|ref|ZP_06649944.1| GTP-binding protein engA [Escherichia coli FVEC1412]
 gi|298381753|ref|ZP_06991352.1| GTP-binding protein engA [Escherichia coli FVEC1302]
 gi|331664074|ref|ZP_08364984.1| ribosome-associated GTPase EngA [Escherichia coli TA143]
 gi|226741139|sp|B7N699|DER_ECOLU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226741140|sp|B1LNG6|DER_ECOSM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|170518985|gb|ACB17163.1| GTP-binding protein EngA [Escherichia coli SMS-3-5]
 gi|218433111|emb|CAR14008.1| GTPase involved in ribosome synthesis and maintenance [Escherichia
           coli UMN026]
 gi|284922461|emb|CBG35548.1| GTP-binding protein [Escherichia coli 042]
 gi|291428160|gb|EFF01187.1| GTP-binding protein engA [Escherichia coli FVEC1412]
 gi|298279195|gb|EFI20709.1| GTP-binding protein engA [Escherichia coli FVEC1302]
 gi|323961327|gb|EGB56939.1| ribosome GTPase EngA [Escherichia coli H489]
 gi|331059873|gb|EGI31850.1| ribosome-associated GTPase EngA [Escherichia coli TA143]
          Length = 490

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|162138394|ref|YP_541823.2| GTP-binding protein EngA [Escherichia coli UTI89]
 gi|218559437|ref|YP_002392350.1| GTP-binding protein EngA [Escherichia coli S88]
 gi|218690631|ref|YP_002398843.1| GTP-binding protein EngA [Escherichia coli ED1a]
 gi|306814419|ref|ZP_07448581.1| GTP-binding protein EngA [Escherichia coli NC101]
 gi|226741136|sp|B7MHZ6|DER_ECO45 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783154|sp|B7MYE6|DER_ECO81 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|218366206|emb|CAR03954.1| GTPase involved in ribosome synthesis and maintenance [Escherichia
           coli S88]
 gi|218428195|emb|CAR09112.2| GTPase involved in ribosome synthesis and maintenance [Escherichia
           coli ED1a]
 gi|222034222|emb|CAP76963.1| GTP-binding protein engA [Escherichia coli LF82]
 gi|294491525|gb|ADE90281.1| ribosome-associated GTPase EngA [Escherichia coli IHE3034]
 gi|305851813|gb|EFM52265.1| GTP-binding protein EngA [Escherichia coli NC101]
 gi|307625933|gb|ADN70237.1| GTP-binding protein EngA [Escherichia coli UM146]
 gi|312947088|gb|ADR27915.1| GTP-binding protein EngA [Escherichia coli O83:H1 str. NRG 857C]
 gi|323949171|gb|EGB45062.1| ribosome GTPase EngA [Escherichia coli H252]
 gi|323955752|gb|EGB51510.1| ribosome GTPase EngA [Escherichia coli H263]
          Length = 490

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  S     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARSGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV 158


>gi|194432132|ref|ZP_03064421.1| ribosome-associated GTPase EngA [Shigella dysenteriae 1012]
 gi|194419661|gb|EDX35741.1| ribosome-associated GTPase EngA [Shigella dysenteriae 1012]
 gi|332089695|gb|EGI94796.1| small GTP-binding domain protein [Shigella dysenteriae 155-74]
          Length = 490

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|331648208|ref|ZP_08349298.1| ribosome-associated GTPase EngA [Escherichia coli M605]
 gi|26109281|gb|AAN81483.1|AE016764_165 Probable GTP-binding protein engA [Escherichia coli CFT073]
 gi|331043068|gb|EGI15208.1| ribosome-associated GTPase EngA [Escherichia coli M605]
          Length = 503

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 216 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 275

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 276 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 335

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 336 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 395

Query: 373 IPSH 376
           + + 
Sbjct: 396 MLTR 399



 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 8   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 67

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 68  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 127

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 128 LVANKTDGLDPDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV 171


>gi|146293744|ref|YP_001184168.1| GTP-binding protein EngA [Shewanella putrefaciens CN-32]
 gi|166225857|sp|A4Y8T6|DER_SHEPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145565434|gb|ABP76369.1| small GTP-binding protein [Shewanella putrefaciens CN-32]
 gi|319427118|gb|ADV55192.1| ribosome-associated GTPase EngA [Shewanella putrefaciens 200]
          Length = 488

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 118/271 (43%), Gaps = 36/271 (13%)

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           D I +++      S+    GE+  +       +T++  +  A   ++E   ++    +EV
Sbjct: 121 DGIDADSACAEFWSLG--LGEVYQMAASQGRGVTNMIEY--ALTPYAEAMGIERQGEEEV 176

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +++  + + +     ++ +   +     K+ I+G  N GKS+L N +  ++  +V D PG
Sbjct: 177 VDERQYTEEE-----AEAEQKRLQDLPIKLAIIGKPNVGKSTLTNRILGEERVVVYDEPG 231

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN 309
           TTRD + I ++ EG    I DTAG+R    +    EK  + +T   VE+A+++LL+ +  
Sbjct: 232 TTRDSIYIPMEREGREYVIIDTAGVRRRSKVHQVIEKFSVIKTLKAVEDANVVLLIIDAR 291

Query: 310 ---SKKEI-----SFPKNIDFIFIGTKSD-----LYSTYTEEYD-----------HLISS 345
              +++++     +       +    K D     +      E D           H IS+
Sbjct: 292 EGVAEQDLGLLGFALNAGRALVIAVNKWDGIDQGIKDRVKSELDRRLGFIDFARIHFISA 351

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             G G+  L   I+    +  +++  S+ + 
Sbjct: 352 LHGTGVGHLFESIEEAYDSATRRVSTSMLTR 382



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 8/129 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + +E +  +++   +E AD++L + +  +     ++S  ++          +  K D   
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSREKTTFVVANKVDGID 124

Query: 334 TYTEEYDHL 342
             +   +  
Sbjct: 125 ADSACAEFW 133


>gi|289423092|ref|ZP_06424907.1| ribosome-associated GTPase EngA [Peptostreptococcus anaerobius
           653-L]
 gi|289156423|gb|EFD05073.1| ribosome-associated GTPase EngA [Peptostreptococcus anaerobius
           653-L]
          Length = 439

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 11/180 (6%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +    DV    S      +  L ++I  +   G   E   +  K+ I G  NAGKSS+ N
Sbjct: 136 YELGLDVPFAVSGANAIGLGDLLDEIVKNFPDGLNTEYDEDVIKVAITGKPNAGKSSILN 195

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFL 294
            +  ++  IV+ I GTTRD +    +       + DTAGIR    +    E+  + R+  
Sbjct: 196 NILGEERVIVSPIAGTTRDAIDTYFEQGDNKFLLIDTAGIRRRSKVYENVERFSVIRSMS 255

Query: 295 EVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
            V+ AD++L++ +              I+  +    IF+  K DL     +   +   S 
Sbjct: 256 AVDRADVVLIVIDATEGVTEQDTKIAGIAHDEGKACIFVVNKWDLVEKDNKTMGNYKMSI 315



 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 18/172 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N   + I+G  N GKS+LFN L    ++IV D PG TRD +  +++       I DT 
Sbjct: 1   MDNRPIVAIVGRPNVGKSTLFNKLTGTKISIVEDTPGVTRDRIFGEVEWLNKYFTIIDTG 60

Query: 276 GIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIG 326
           GI  E+DDI+  +   +  L V+ A +IL + +             +I    N   + + 
Sbjct: 61  GIEPESDDIIISQMRNQAMLAVDMAHVILFVVDGKGGLTAADREVADILRKTNKPVLLVV 120

Query: 327 TKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKL 369
            K D  S +   YD            S     GL +L+++I     +     
Sbjct: 121 NKIDSKSQWDNVYDFYELGLDVPFAVSGANAIGLGDLLDEIVKNFPDGLNTE 172


>gi|59711240|ref|YP_204016.1| GTP-binding protein EngA [Vibrio fischeri ES114]
 gi|197336109|ref|YP_002155390.1| ribosome-associated GTPase EngA [Vibrio fischeri MJ11]
 gi|81311005|sp|Q5E768|DER_VIBF1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238690264|sp|B5FAX6|DER_VIBFM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|59479341|gb|AAW85128.1| predicted GTP-binding protein [Vibrio fischeri ES114]
 gi|197317599|gb|ACH67046.1| ribosome-associated GTPase EngA [Vibrio fischeri MJ11]
          Length = 500

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 27/203 (13%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            D++   ++     +     K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I
Sbjct: 192 KDLTEEDAEKDFARLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYI 251

Query: 261 DLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEI 314
            ++ EG    + DTAG+R    I    EK  + +T   VE+A+++LL+ +     S +++
Sbjct: 252 PMEREGQEYVLIDTAGVRRRGRINETVEKFSVIKTLKAVEDANVVLLVIDARENISDQDL 311

Query: 315 SFP-----KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEE 353
           S            +    K      D+      E D           H IS+  G G+  
Sbjct: 312 SLLGFALNAGRSLVIAVNKWDGLDNDVKEKVKSELDRRLGFVDFARIHFISALHGTGVGH 371

Query: 354 LINKIKSILSNKFKKLPFSIPSH 376
           L   ++    +  K++  S+ + 
Sbjct: 372 LYESVQEAYVSATKRVGTSVLTR 394



 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       LE     + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAKLEEQEFILIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLYS 333
             VE +  +++   +E AD++L + +      ++ + I+     +      +  K D   
Sbjct: 65  QGVETKMAEQSLAAIEEADVVLFMVDGRAGLTSADEAIAKHLRSREKPTFLVVNKIDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELIN 356
                 +            ++  G G+  L+ 
Sbjct: 125 ADAASAEFWQLGMNKVYQIAASHGRGVTSLLE 156


>gi|227887546|ref|ZP_04005351.1| GTP-binding protein [Escherichia coli 83972]
 gi|300981973|ref|ZP_07175819.1| ribosome-associated GTPase EngA [Escherichia coli MS 45-1]
 gi|300998067|ref|ZP_07181927.1| ribosome-associated GTPase EngA [Escherichia coli MS 200-1]
 gi|301047143|ref|ZP_07194239.1| ribosome-associated GTPase EngA [Escherichia coli MS 185-1]
 gi|227835896|gb|EEJ46362.1| GTP-binding protein [Escherichia coli 83972]
 gi|300300945|gb|EFJ57330.1| ribosome-associated GTPase EngA [Escherichia coli MS 185-1]
 gi|300304046|gb|EFJ58566.1| ribosome-associated GTPase EngA [Escherichia coli MS 200-1]
 gi|300408868|gb|EFJ92406.1| ribosome-associated GTPase EngA [Escherichia coli MS 45-1]
 gi|315292449|gb|EFU51801.1| ribosome-associated GTPase EngA [Escherichia coli MS 153-1]
 gi|324011217|gb|EGB80436.1| ribosome-associated GTPase EngA [Escherichia coli MS 60-1]
          Length = 499

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 212 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 271

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 272 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 331

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 332 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 391

Query: 373 IPSH 376
           + + 
Sbjct: 392 MLTR 395



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 4   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 63

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 64  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 123

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 124 LVANKTDGLDPDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV 167


>gi|300904315|ref|ZP_07122172.1| ribosome-associated GTPase EngA [Escherichia coli MS 84-1]
 gi|300403747|gb|EFJ87285.1| ribosome-associated GTPase EngA [Escherichia coli MS 84-1]
          Length = 492

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 212 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 271

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 272 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 331

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 332 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 391

Query: 373 IPSH 376
           + + 
Sbjct: 392 MLTR 395



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 4   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 63

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 64  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 123

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 124 LVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 167


>gi|332087958|gb|EGI93083.1| small GTP-binding domain protein [Shigella boydii 5216-82]
          Length = 490

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|308187766|ref|YP_003931897.1| GTP-binding protein engA [Pantoea vagans C9-1]
 gi|308058276|gb|ADO10448.1| GTP-binding protein engA [Pantoea vagans C9-1]
          Length = 496

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 208 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 267

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ + +   S +++S            + +  K
Sbjct: 268 RAKISDTVEKFSVIKTLQAIEDANVVMLVIDAHAGISDQDLSLLGFILNSGRSLVIVVNK 327

Query: 329 SD-LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D L     +E                 H IS+  G G+  L   I        +++  S
Sbjct: 328 WDGLSQEVRDEVKETLDFRLGFIDFARIHFISALHGSGVGNLFESITEAYDCSTRRVNTS 387

Query: 373 IPSH 376
           + + 
Sbjct: 388 LLTR 391



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + VE    +++ L +E AD++L + +       + ++I+     +      +  K+D   
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFMVDARAGMMAADQQIAKHLRSRQKATFLVANKTDGLD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINK 357
                 D         H I++  G G+  LI +
Sbjct: 125 PDQAVVDFYSLGLGEIHAIAASHGRGVSSLIEE 157


>gi|260891170|ref|ZP_05902433.1| ribosome-associated GTPase EngA [Leptotrichia hofstadii F0254]
 gi|260859197|gb|EEX73697.1| ribosome-associated GTPase EngA [Leptotrichia hofstadii F0254]
          Length = 441

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 13/157 (8%)

Query: 194 NDILFLKNDISSHISQGKLGEIIR--NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
                L + + + I++ +  +I +  NG  I ILG  NAGKSSL N L  ++ +IV+DI 
Sbjct: 148 EHKTNLGDLLDAVINKFEDKKIKQTENGINIAILGRPNAGKSSLVNKLLNEERSIVSDIA 207

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI 308
           GTTRD +   L   G    + DTAGIR     DD +E   + R    ++ AD+ +L+ + 
Sbjct: 208 GTTRDTIDSSLKYNGETYTLIDTAGIRRKSKVDDDIEYYSVLRAIKAIKRADVCVLMLDA 267

Query: 309 -----NSKKEIS---FPKNIDFIFIGTKSDLYSTYTE 337
                +  K I+   + +    I    K DL      
Sbjct: 268 TELLTDQDKRIAGMIYEERKPIIIAVNKWDLIEKNNN 304



 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    ++IV D PG TRD L  +++  G    + DT G+   T
Sbjct: 5   VAIVGRPNVGKSTLFNKLVGDRLSIVKDEPGVTRDRLYREMEWSGKEFILVDTGGLEPRT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +D +  +  ++  + ++ AD+I+ L +  +           +   ++   +    K D Y
Sbjct: 65  EDFMMGKIKQQAQVAIDEADVIIFLVDGKAGITGLDEDVATVLRRQDKKVVVAVNKIDNY 124

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
               E        F G G EE+I
Sbjct: 125 MRDQENIFE----FYGLGFEEVI 143


>gi|110642676|ref|YP_670406.1| GTP-binding protein EngA [Escherichia coli 536]
 gi|161486155|ref|NP_754915.2| GTP-binding protein EngA [Escherichia coli CFT073]
 gi|191172582|ref|ZP_03034121.1| ribosome-associated GTPase EngA [Escherichia coli F11]
 gi|218701021|ref|YP_002408650.1| GTP-binding protein EngA [Escherichia coli IAI39]
 gi|312965427|ref|ZP_07779659.1| small GTP-binding domain protein [Escherichia coli 2362-75]
 gi|31563151|sp|Q8FF59|DER_ECOL6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123147831|sp|Q0TEX4|DER_ECOL5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226741137|sp|B7NQW0|DER_ECO7I RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|110344268|gb|ABG70505.1| probable GTP-binding protein EngA [Escherichia coli 536]
 gi|190907055|gb|EDV66655.1| ribosome-associated GTPase EngA [Escherichia coli F11]
 gi|218371007|emb|CAR18835.1| GTPase involved in ribosome synthesis and maintenance [Escherichia
           coli IAI39]
 gi|281179565|dbj|BAI55895.1| putative GTP-binding protein [Escherichia coli SE15]
 gi|307554534|gb|ADN47309.1| GTP-binding protein EngA [Escherichia coli ABU 83972]
 gi|312289847|gb|EFR17735.1| small GTP-binding domain protein [Escherichia coli 2362-75]
 gi|320196348|gb|EFW70972.1| GTP-binding protein EngA [Escherichia coli WV_060327]
 gi|323188371|gb|EFZ73663.1| small GTP-binding domain protein [Escherichia coli RN587/1]
 gi|330912286|gb|EGH40796.1| GTP-binding protein EngA [Escherichia coli AA86]
          Length = 490

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV 158


>gi|331673966|ref|ZP_08374729.1| ribosome-associated GTPase EngA [Escherichia coli TA280]
 gi|331069239|gb|EGI40631.1| ribosome-associated GTPase EngA [Escherichia coli TA280]
          Length = 503

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 216 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 275

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEIS-----FPKNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 276 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSQLGFILNSGRSLVIVVNK 335

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 336 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 395

Query: 373 IPSH 376
           + + 
Sbjct: 396 MLTR 399



 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 8   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 67

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 68  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 127

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 128 LVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 171


>gi|148827277|ref|YP_001292030.1| GTP-binding protein EngA [Haemophilus influenzae PittGG]
 gi|148718519|gb|ABQ99646.1| GTP-binding protein EngA [Haemophilus influenzae PittGG]
          Length = 504

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 113/277 (40%), Gaps = 33/277 (11%)

Query: 133 DLISSETEMQRRLSM-----EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +++       +     E ++        Q ++++    +    + D ++    +  
Sbjct: 123 DGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENADENDRTSEEEQ 182

Query: 188 SSKEVLNDILFLKN-DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              E   D    ++  +       +L E      KI I+G  N GKS+L N +  +D  +
Sbjct: 183 DEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVV 242

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           V D+PGTTRD + I ++ +G    + DTAG+R+   +    EK  + +T   +++A+++L
Sbjct: 243 VFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVL 302

Query: 304 LLKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD---------- 340
           L  +     S +++S            + +  K      D+      E D          
Sbjct: 303 LTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFAR 362

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            H IS+  G G+  L + IK   +   +K+  S+ + 
Sbjct: 363 VHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTR 399



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       + GY   + DT GI  T+
Sbjct: 6   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + VE++  +++ L ++ AD++L L +  +            +   +N   + +  K+D  
Sbjct: 66  EGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVLVANKTD-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELIN 356
                + D   + F   GL E+  
Sbjct: 124 ---GIDADSHCAEFYQLGLGEIEQ 144


>gi|323977306|gb|EGB72392.1| ribosome GTPase EngA [Escherichia coli TW10509]
          Length = 490

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|289806068|ref|ZP_06536697.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 188

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 19/180 (10%)

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS- 315
            L   + ++G  + I DTAG+R+ +D VE+ GI+R + E+E AD +L + +  +   +  
Sbjct: 6   RLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP 65

Query: 316 ----------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELINKIK 359
                      PKN+    +  K+D+       S         +S+ TGEG++ L N +K
Sbjct: 66  ADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLK 125

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASVSLGK 418
             +      +     + +RHL  L++   +LE            +++AE LRLA  SL +
Sbjct: 126 QSMGFD-TNMEGGFLARRRHLQALAEAANHLEQGKAQLLGAWAGELLAEELRLAQQSLSE 184


>gi|149012955|ref|ZP_01833844.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP19-BS75]
 gi|147763108|gb|EDK70049.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP19-BS75]
          Length = 170

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 81/170 (47%), Gaps = 13/170 (7%)

Query: 284 VEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT- 336
           +E+ G++R+   ++ ADL+LL+   +       ++ +   ++ + I +  K+DL  T   
Sbjct: 1   MEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIET 60

Query: 337 ---EEYDHLISSFTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVRYLE 391
               E    IS    + ++++  +I ++        +   +  S+ RH+  + + V  L+
Sbjct: 61  SKLPEDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ 120

Query: 392 MA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
                 E    +D++  +L      LG+ITG    ++L+  +FS+FC+GK
Sbjct: 121 AVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 170


>gi|47094517|ref|ZP_00232186.1| GTPase family protein [Listeria monocytogenes str. 4b H7858]
 gi|47017110|gb|EAL07974.1| GTPase family protein [Listeria monocytogenes str. 4b H7858]
          Length = 311

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 15/162 (9%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + + +H  + +  E   +  K  ++G  N GKSS+ NAL  +D  IV+DI GTTRD 
Sbjct: 29  DMLDAVRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDA 88

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +      +G    + DTAG+R+   +    EK  + R    +E +D++L++  IN+++ I
Sbjct: 89  IDTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVV--INAEEGI 146

Query: 315 ----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
                     +       I +  K D  +   +  +      
Sbjct: 147 REQDKRIAGYAHDAGRAIIIVVNKWDAINKDEKTINVWTEDI 188


>gi|88858476|ref|ZP_01133118.1| GTP-binding protein EngA [Pseudoalteromonas tunicata D2]
 gi|88820093|gb|EAR29906.1| GTP-binding protein EngA [Pseudoalteromonas tunicata D2]
          Length = 492

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 96/236 (40%), Gaps = 31/236 (13%)

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN----GYKIVILGH 227
           +   L+ + +  ++ F+    + + L   N+        +  +  +       K+ I+G 
Sbjct: 153 VTQLLETALQPVIEEFNRLNGVEEELEQINEFDEFEEGAEEPDEYQEFSDKPIKLAIIGR 212

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIV 284
            N GKS+L N +  ++  IV D+PGTTRD + I +        + DTAG+R+     D+ 
Sbjct: 213 PNVGKSTLTNRILGEERVIVYDMPGTTRDSIYIPMTRNDQEYVLIDTAGVRKRKKVSDVA 272

Query: 285 EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYT 336
           EK  + +T   +E+A+++LL+ +     S +++S            +    K D    Y 
Sbjct: 273 EKFSVIKTLKAIEDANVVLLVVDAREGISDQDLSLLGFALNSGRSLVIAVNKWDGLDEYV 332

Query: 337 E----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           +                   H IS+  G G+  L   +     +  K++  ++   
Sbjct: 333 KTRIKTELDRRLGFIDFARIHFISALHGTGVGHLFESVDEAYQSATKRISTAMLRR 388



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD        + Y   + DT GI  ++
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKYDEYEFIVVDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDL 331
           + +E E  +++ L +E AD+++ L +  +    +                   +  K D 
Sbjct: 65  EGIELEMAEQSLLAIEEADVVMFLVDARAGMTAADQAIANHLRKLNTQKSIFLVANKIDG 124

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
               +   +            ++  G G+ +L+      +  +F +L   
Sbjct: 125 LDADSSCAEFYQLALGEVYQIAASHGRGVTQLLETALQPVIEEFNRLNGV 174


>gi|187731692|ref|YP_001881302.1| GTP-binding protein EngA [Shigella boydii CDC 3083-94]
 gi|238691721|sp|B2TXT6|DER_SHIB3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|187428684|gb|ACD07958.1| ribosome-associated GTPase EngA [Shigella boydii CDC 3083-94]
          Length = 490

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKIDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|300817719|ref|ZP_07097934.1| ribosome-associated GTPase EngA [Escherichia coli MS 107-1]
 gi|300529707|gb|EFK50769.1| ribosome-associated GTPase EngA [Escherichia coli MS 107-1]
          Length = 499

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 212 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 271

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ + +   S +++S            + +  K
Sbjct: 272 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAHEGISDQDLSLLGFILNSGRSLVIVVNK 331

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 332 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 391

Query: 373 IPSH 376
           + + 
Sbjct: 392 MLTR 395



 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 4   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 63

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 64  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 123

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 124 LVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 167


>gi|86608739|ref|YP_477501.1| GTP-binding protein EngA [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123502588|sp|Q2JM09|DER_SYNJB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|86557281|gb|ABD02238.1| GTP-binding protein EngA [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 459

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 31/224 (13%)

Query: 194 NDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           N +  L   + +H+ +         +   + I+G  N GKSSL N L   + AIV+ I G
Sbjct: 152 NGVAELLEAVLAHLPEVTAEAAGEPDPIAVSIVGRPNVGKSSLLNRLVGSERAIVSPISG 211

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI- 308
           TTRD +   +  EG   ++ DTAGIR+ + +    E   I R F  ++ +D +LL+ +  
Sbjct: 212 TTRDAIDTVVTWEGQPYRLIDTAGIRKKNRVQYGIEFFSINRAFKAIQRSDAVLLVIDAL 271

Query: 309 --NSKKEISFP-----KNIDFIFIGTKSDLYST--------YTEEYD-----------HL 342
              ++++         +    + +  K D            +T E               
Sbjct: 272 EGVTEQDQRLAGRIEEEGRACVVVVNKWDAVENKDTHTINEFTREIRDRLYFIEWAPLLF 331

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           +S+ TG+   ++  ++ ++++   K++P ++ +         Q+
Sbjct: 332 VSALTGQRTHKIFEQVNTVVAAHRKRVPTAVVNEVLQDALAWQS 375



 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 19/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +A    AIV D PG TRD L  +++  G  +++ DT G+   D
Sbjct: 6   VAIVGRPNVGKSTLVNRMAGVRSAIVHDEPGVTRDRLYQEVEWNGRRLRVVDTGGLVFGD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFI--GTKSDLY 332
           D        ++    +  A  ++ + +          +   + +      +    K +  
Sbjct: 66  DSEFLPHIRQQAMAAMAEAQAVIFVVDGREGLTPADVEVADWLRKQPLPVVVAVNKCESG 125

Query: 333 S----------TYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                                S   G G+ EL+  + + L  
Sbjct: 126 QMGLAQAAAFWELGLGDPIPCSGIHGNGVAELLEAVLAHLPE 167


>gi|312884308|ref|ZP_07744017.1| GTP-binding protein EngA [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368081|gb|EFP95624.1| GTP-binding protein EngA [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 495

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 105/257 (40%), Gaps = 33/257 (12%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           M  ++       G  ID+  +  +      +    ED+ +F  ++        +      
Sbjct: 140 MYQIAAAHGRGVGALIDRALNPFAEEMIAQEQGVIEDLTDFVDQDEEVLEYTEEE----- 194

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ +   +     K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G
Sbjct: 195 -AEQEFQRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDG 253

Query: 267 YLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP--- 317
               + DTAG+R    I    EK  + +T   +E+A+++LL+ +     S +++S     
Sbjct: 254 REYVLIDTAGVRRRKRINETVEKFSVVKTLKAIEDANVVLLVIDARENISDQDLSLLGFA 313

Query: 318 --KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIK 359
                  +    K      D+     +E D           H IS+  G G+  L   ++
Sbjct: 314 LNAGRSIVLAVNKWDGLDMDVKEHVKKELDRRLGFVDFARLHFISALHGTGVGHLFESVQ 373

Query: 360 SILSNKFKKLPFSIPSH 376
               +   ++  S+ + 
Sbjct: 374 EAYKSATTRVGTSVLTR 390



 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +     +I+   +        + +  K D   
Sbjct: 65  EGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPADIAISNHLRKLAKPSMLVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                 D            ++  G G+  LI++  +  + +       + 
Sbjct: 125 ADAASADFWQLGVDDMYQIAAAHGRGVGALIDRALNPFAEEMIAQEQGVI 174


>gi|304398581|ref|ZP_07380453.1| ribosome-associated GTPase EngA [Pantoea sp. aB]
 gi|304353792|gb|EFM18167.1| ribosome-associated GTPase EngA [Pantoea sp. aB]
          Length = 496

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 208 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 267

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ + +   S +++S            + +  K
Sbjct: 268 RAKISDTVEKFSVIKTLQAIEDANVVMLVIDAHAGISDQDLSLLGFILNSGRSLVIVVNK 327

Query: 329 SD-LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D L     +E                 H IS+  G G+  L   I        +++  S
Sbjct: 328 WDGLSQEVRDEVKETLDFRLGFIDFARIHFISALHGSGVGNLFESITEAYDCSTRRVNTS 387

Query: 373 IPSH 376
           + + 
Sbjct: 388 LLTR 391



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + VE    +++ L +E AD++L + +       + ++I+     +      +  K+D   
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFMVDARAGMMAADQQIAKHLRSRQKATFLVANKTDGMD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINK 357
                 D         H I++  G G+  LI +
Sbjct: 125 PDQAIVDFYSLGLGEIHAIAASHGRGVSSLIEE 157


>gi|215487861|ref|YP_002330292.1| GTP-binding protein EngA [Escherichia coli O127:H6 str. E2348/69]
 gi|254783152|sp|B7UGV7|DER_ECO27 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|215265933|emb|CAS10342.1| predicted GTP-binding protein [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 490

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV 158


>gi|294637684|ref|ZP_06715962.1| ribosome-associated GTPase EngA [Edwardsiella tarda ATCC 23685]
 gi|291089160|gb|EFE21721.1| ribosome-associated GTPase EngA [Edwardsiella tarda ATCC 23685]
          Length = 496

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 27/186 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+
Sbjct: 207 QPIKIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGV 266

Query: 278 RETD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIG 326
           R+     D VEK  + +T   +E+A+++LL+ +     S +++S            + + 
Sbjct: 267 RKRGKVTDTVEKFSVIKTLQAIEDANVVLLVIDARQGISDQDLSLLGFILNSGRSLVVVV 326

Query: 327 TKSDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            K D  S   +E                  H IS+  G G+  L   I+    +  +++ 
Sbjct: 327 NKWDGLSLEVKEQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYESATRRVS 386

Query: 371 FSIPSH 376
            S+ + 
Sbjct: 387 TSMLTR 392



 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ G+   I DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVNGHEFIIIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLYS 333
           + VE    +++ L +E AD++L L +  S      + I+     ++     +  K+D   
Sbjct: 65  NGVETHMAEQSLLAIEEADIVLFLVDARSGLLPADEAIARHLRSRDKSTFLVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN 356
                 D         H I++  G G+ +LI 
Sbjct: 125 ADVAIGDFYSLGLGEVHPIAASHGRGVTQLIE 156


>gi|167753390|ref|ZP_02425517.1| hypothetical protein ALIPUT_01664 [Alistipes putredinis DSM 17216]
 gi|167658015|gb|EDS02145.1| hypothetical protein ALIPUT_01664 [Alistipes putredinis DSM 17216]
          Length = 433

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L  +  AIV    GTTRD      D  G    + DT G    +
Sbjct: 4   VAIVGRPNVGKSTLFNRLVGQRKAIVDATAGTTRDRHYGKTDWNGREFSVIDTGGYSVNS 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E +  ++  L +E AD+IL L E+N+          +I    +   + +  K D Y
Sbjct: 64  DDIFEDDIRRQVMLAIEEADVILFLVEVNTGITDLDQMMADILRRTSKKVLLVCNKVDNY 123

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                 ++         + ISS +G G  +L+++I   L  + K     +P
Sbjct: 124 DLIYSSHEFYSLGLGEPYCISSMSGSGTGDLMDEIVRDLPPETKNEEEELP 174



 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 26/204 (12%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++I   +   +         +I I+G  N GKSSL NAL  ++  IVT I GTTRD 
Sbjct: 153 DLMDEIVRDLP-PETKNEEEELPRITIVGRPNVGKSSLTNALLGEERNIVTPIAGTTRDA 211

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    +  G    + DTAG+R+   +    E   + R+   +E +D+ +L+ +     E 
Sbjct: 212 IHSRYNKYGLDFYLVDTAGMRKKGKVTEDLEFYSVMRSIRAIEESDVCILMLDAQQGLES 271

Query: 315 SFPKNIDFIF--------IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL--SN 364
                 + I         +  K DL                   ++E    +   L   N
Sbjct: 272 QDLNIHNLIVRNRKGCVIVVNKWDLVEKGNNT------------MKEWKEALAKKLAPFN 319

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVR 388
               +  S+ + +R L  L   +R
Sbjct: 320 DIPIIFTSVLNKQRILEVLQTAIR 343


>gi|188533178|ref|YP_001906975.1| GTP-binding protein EngA [Erwinia tasmaniensis Et1/99]
 gi|238689730|sp|B2VE93|DER_ERWT9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|188028220|emb|CAO96078.1| GTP-binding protein [Erwinia tasmaniensis Et1/99]
          Length = 499

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 101/248 (40%), Gaps = 29/248 (11%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI--SSHISQGKLGEIIRNGYK 221
            L  +      D    + E  +   +     ++   +  +   +   +      +    K
Sbjct: 153 SLLELVLLPWMDEVVPQRELTEEEENAAYWAELAAKEAKVNGEATADEEDDFNPLDLPIK 212

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+  
Sbjct: 213 LAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKRG 272

Query: 282 ---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD 330
              + VEK  + +T   +E+A++++L+ + +   S +++S            + +  K D
Sbjct: 273 KVTETVEKFSVIKTLQAIEDANVVMLVIDAHEGISDQDLSLLGFILNSGRSLVIVVNKWD 332

Query: 331 -----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                +     E  D           H IS+  G G+  L   +        +++  S+ 
Sbjct: 333 GLSQEVRDEVKEALDYRLGFIDFARIHFISALHGSGVGNLFESVTEAYDCSTRRVNTSML 392

Query: 375 SHKRHLYH 382
           +   H+  
Sbjct: 393 TRIMHMAA 400



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 81/205 (39%), Gaps = 22/205 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGNE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADTAIAKHLRSRQKPTFLVANKTDGLD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN-----KIKSILSNKFKKLPFSIPSHKRH 379
             +   D         H I++  G G+  L+       +  ++  +         ++   
Sbjct: 125 ADSAVVDFWSLGLGEIHPIAASHGRGVTSLLELVLLPWMDEVVPQRELTEEEENAAYWAE 184

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI 404
           L      V     A   +    LD+
Sbjct: 185 LAAKEAKVNGEATADEEDDFNPLDL 209


>gi|56420756|ref|YP_148074.1| GTP-binding protein EngA [Geobacillus kaustophilus HTA426]
 gi|81819681|sp|Q5KXT0|DER_GEOKA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|56380598|dbj|BAD76506.1| GTP-binding protein [Geobacillus kaustophilus HTA426]
          Length = 436

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 32/229 (13%)

Query: 120 NGKIDLLEA-ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           NG+  +  A E +A L+   +     L++  +         +  D +    +     L F
Sbjct: 91  NGRDGVTAADEEVAKLLR-RSNKPVVLAVNKIDNP------EMRDLIYDFYA-----LGF 138

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E   +    S      +  L + +  H  +G   E   +  K  ++G  N GKSSL NA
Sbjct: 139 GEPYPI----SGAHGTGLGDLLDAVVRHFPKGGGQEYEEDVIKFCLIGRPNVGKSSLVNA 194

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLE 295
           +  ++  IV+DI GTTRD +      EG    I DTAG+R+   I    EK  + R    
Sbjct: 195 ILGEERVIVSDIAGTTRDAVDTSFVREGQEYVIIDTAGMRKRGKIYESTEKYSVLRALRA 254

Query: 296 VENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYST 334
           +E +D++L++  +N+++ I          +       I I  K D    
Sbjct: 255 IERSDVVLVV--LNAEEGIIEQDKKIAGYAHEAGRGVILIVNKWDAIEK 301



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSRAEWLNHSFYLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           + +  +  ++  + ++ AD+I+ +      + +  E    +    N   +    K D   
Sbjct: 66  EPLLVQIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKLLRRSNKPVVLAVNKIDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                YD           IS   G GL +L++ +         + 
Sbjct: 126 MRDLIYDFYALGFGEPYPISGAHGTGLGDLLDAVVRHFPKGGGQE 170


>gi|301024743|ref|ZP_07188383.1| ribosome-associated GTPase EngA [Escherichia coli MS 69-1]
 gi|300396412|gb|EFJ79950.1| ribosome-associated GTPase EngA [Escherichia coli MS 69-1]
          Length = 499

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 212 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 271

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 272 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 331

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 332 WDGLSQDVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 391

Query: 373 IPSH 376
           + + 
Sbjct: 392 MLTR 395



 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 4   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 63

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 64  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 123

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 124 LVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 167


>gi|138895798|ref|YP_001126251.1| GTP-binding protein EngA [Geobacillus thermodenitrificans NG80-2]
 gi|196248680|ref|ZP_03147380.1| small GTP-binding protein [Geobacillus sp. G11MC16]
 gi|166198718|sp|A4IQA2|DER_GEOTN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|134267311|gb|ABO67506.1| GTP-binding protein-like protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211556|gb|EDY06315.1| small GTP-binding protein [Geobacillus sp. G11MC16]
          Length = 436

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 94/229 (41%), Gaps = 32/229 (13%)

Query: 120 NGKIDLLEA-ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           NG+  +  A E +A L+   +     L++  +         +  D +    +     L F
Sbjct: 91  NGRDGVTAADEEVAKLLR-RSNKPVVLAVNKIDNP------EMRDLIYDFYA-----LGF 138

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E   +    S      +  L + ++ H  +    E   +  K  ++G  N GKSSL NA
Sbjct: 139 GEPYPI----SGAHGTGLGDLLDAVARHFPKDHGQEYEEDVIKFCLIGRPNVGKSSLVNA 194

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLE 295
           +  ++  IV+DI GTTRD +      EG    I DTAG+R+   I    EK  + R    
Sbjct: 195 ILGEERVIVSDIAGTTRDAVDTSFVREGQKYVIIDTAGMRKRGKIYESTEKYSVLRALRA 254

Query: 296 VENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYST 334
           +E +D++L++  +N+++ I          +       I +  K D    
Sbjct: 255 IERSDVVLVV--LNAEEGIIEQDKKIAGYAHEAGRGVILVVNKWDAVEK 301



 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHSFYLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           + +  +  ++  + ++ AD+I+ +      + +  E    +    N   +    K D   
Sbjct: 66  EPLLVQIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKLLRRSNKPVVLAVNKIDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                YD           IS   G GL +L++ +         + 
Sbjct: 126 MRDLIYDFYALGFGEPYPISGAHGTGLGDLLDAVARHFPKDHGQE 170


>gi|223985795|ref|ZP_03635838.1| hypothetical protein HOLDEFILI_03144 [Holdemania filiformis DSM
           12042]
 gi|223962243|gb|EEF66712.1| hypothetical protein HOLDEFILI_03144 [Holdemania filiformis DSM
           12042]
          Length = 434

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 13/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +     + +  E+   G +  I+G  N GKSSL NAL K++  IV+DI GTTRD 
Sbjct: 154 DVMDALVGAFPEKQQPEL--EGIRFAIIGRPNVGKSSLVNALLKEERVIVSDIEGTTRDA 211

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +    + +G    + DTAGIR+   +    EK  + R    +E  D++L + +  S    
Sbjct: 212 VDTPFEHDGKQYVVVDTAGIRKRGKVYENIEKYSVLRAMSAIERCDVVLFVIDGESGIRE 271

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +       I +  K D    
Sbjct: 272 QDKHVAGYAHEAGKPIIIVYNKWDAVEK 299



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 17/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +           ++ DT GI+  +
Sbjct: 6   VAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGKGTWLTQDFRLIDTGGIQLEN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFIGTKSDLYS 333
              ++E   +  + +E AD+IL +         +      +        +    K D  +
Sbjct: 66  QPFQEEIKAQVEIAIEEADVILFVVNGRDGVTGDDEFIARMLRRSGKPVVLAVNKIDDAT 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                Y+           +S   G G+ ++++ +      K +     I
Sbjct: 126 LQGNIYEFYALGLSEPIAVSGSHGIGIGDVMDALVGAFPEKQQPELEGI 174


>gi|225849583|ref|YP_002729817.1| GTP-binding protein EngA [Persephonella marina EX-H1]
 gi|254783162|sp|C0QT02|DER_PERMH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|225645742|gb|ACO03928.1| ribosome-associated GTPase EngA [Persephonella marina EX-H1]
          Length = 447

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 38/227 (16%)

Query: 197 LFLKNDISSHISQGKLG--------EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
             L + +   I + +          E   +  K+ I+G  NAGKSSL NA+  ++ A+V+
Sbjct: 152 ADLLDAVVQDIPEYEREASKEVGEKEEKSDVIKVAIVGKPNAGKSSLLNAILGEERAVVS 211

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLL 305
           +IPGTTRDV+    + +       DTAG+R+    D  +E   I RT   ++ AD+I+ +
Sbjct: 212 EIPGTTRDVVDTLFEWKDQKFLFLDTAGLRKKSKVDYGIEFFSIGRTLDAIKKADVIVHV 271

Query: 306 KEINSKKEISFPKNIDFI--------FIGTKSDLYSTYTE------------------EY 339
            +          K    I         +  K D     +E                    
Sbjct: 272 IDAQQGATEQDTKIAHLIQKYTKPAVIVINKIDTVPPKSEVLNRIKNQVRERLYFIPYAP 331

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQ 385
             + S+   +G+++L+ +I  + +  +K++     +   + +  L Q
Sbjct: 332 IVMTSAKNRKGIKQLLKEITDVYNQSWKRVGTGQLNRAIKQILSLRQ 378



 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 18/159 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y++ I+G  N GKSSLFN +  K  AIV DIPG TRD +    +  G   ++ DT G  E
Sbjct: 2   YRVAIVGRPNVGKSSLFNRIIGKRKAIVEDIPGVTRDRIVSTAEWRGVTFEVVDTGGYIE 61

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFP---KNIDFIFIGTKSD 330
           +D D       K+   E+E +D  +L+ +       + KEI+      +        K D
Sbjct: 62  SDKDTFAPYIRKQIEKELELSDAFILVVDGKEGLTPADKEIARILHRTDKPVYVAVNKID 121

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKS 360
                   Y+            SS    G+ +L++ +  
Sbjct: 122 NPEMEKAIYEFYELGFEKVFPVSSIQKYGVADLLDAVVQ 160


>gi|218290942|ref|ZP_03494999.1| small GTP-binding protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239107|gb|EED06310.1| small GTP-binding protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 442

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 110/316 (34%), Gaps = 48/316 (15%)

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS-------------------MEG 149
                  R  + G I++ E + + +LI  + ++    +                   +  
Sbjct: 47  EWNGVPFRVIDTGGIEMDEEDEIGNLIRVQAQIAIDEADVILFVVDGRQGVTQADEHVAQ 106

Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209
           +           ++KL H+     +   +          S E       L + + + + +
Sbjct: 107 VLRRAHKPVVLGVNKLDHVEQHALSYEFYRLGFGEPIPFSAEHGRGTGDLLDAVVAALPK 166

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
               +   +  +I  +G  N GKSSL N L  ++  +V+ + GTTRD +   L+ +G   
Sbjct: 167 QSGEDEDEDAIRIAFIGRPNVGKSSLVNRLLGEERVMVSPVAGTTRDAVDTPLERDGQSY 226

Query: 270 KISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPK 318
            + DTAG+R    +    EK  + R    ++ AD+  ++ +  +            +   
Sbjct: 227 VLVDTAGMRRKGKVYERIEKYSVLRALRALDRADVAFVVLDAQTGIVEQDKRVAGYALDA 286

Query: 319 NIDFIFIGTKSDLY-----------STYTEEYDH-------LISSFTGEGLEELINKIKS 360
                F+  K D                 +E+          +S+ TG+ +  L++  K 
Sbjct: 287 GCAIAFVVNKWDAIEKDDKTAHRFEEKIRDEFPFLRFAPVIFVSALTGQRVGRLLDVAKE 346

Query: 361 ILSNKFKKLPFSIPSH 376
           I      ++P S  + 
Sbjct: 347 IAEYHAMRVPTSTLNR 362



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G +N GKS+LFN L  + V+IV D PG TRD +    +  G   ++ DT GI  + 
Sbjct: 6   VAIVGRANVGKSTLFNRLVGRRVSIVEDTPGVTRDRIYGKSEWNGVPFRVIDTGGIEMDE 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +D +      +  + ++ AD+IL + +             ++    +   +    K D  
Sbjct: 66  EDEIGNLIRVQAQIAIDEADVILFVVDGRQGVTQADEHVAQVLRRAHKPVVLGVNKLDHV 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +   Y+            S+  G G  +L++ + + L  +  +   
Sbjct: 126 EQHALSYEFYRLGFGEPIPFSAEHGRGTGDLLDAVVAALPKQSGEDED 173


>gi|170076756|ref|YP_001733394.1| GTP-binding protein EngA [Synechococcus sp. PCC 7002]
 gi|238692797|sp|B1XLH8|DER_SYNP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169884425|gb|ACA98138.1| GTPase of unknown function [Synechococcus sp. PCC 7002]
          Length = 453

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 12/177 (6%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           + +A   +    +     S    +    L + +  ++      E       + I+G  N 
Sbjct: 129 YTQAAEFWELGMEEPFPISAIHGSGTGDLLDKVIEYLPTITDVEEDTT-INVAIIGRPNV 187

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKE 287
           GKSSL NAL  +  AIV+ I GTTRD +   ++  G   ++ DTAGIR     D   E  
Sbjct: 188 GKSSLLNALTGEQRAIVSPISGTTRDAIDTIIERNGQQYRLIDTAGIRRKKNVDYGAEFF 247

Query: 288 GIKRTFLEVENADLILLLKEI---NSKKEISFP-----KNIDFIFIGTKSDLYSTYT 336
            I R F  +  AD++L + ++    +++++        +    I +  K D     T
Sbjct: 248 SINRAFKAIRRADVVLFVIDVLDGVTEQDLKLAGRIIDEGRAVIIVANKWDAVEKDT 304



 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 19/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           I ++G  N GKS+L N +A    AIV D PG TRD        +    +I DT GI  + 
Sbjct: 6   IAVIGRPNVGKSTLVNRIAGDQQAIVHDQPGITRDRTYRPGFWQDRNFQIVDTGGIVFDD 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSD-L 331
            +       ++  + +  A + L + +       + +EI+     +N+  +    K + L
Sbjct: 66  HEEFLPLIREQAAIALAEAAVALFVVDGQAGLNAADQEIADWLRQQNVPVVLAVNKCESL 125

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
              YT+  +           IS+  G G  +L++K+   L         +  +
Sbjct: 126 EQGYTQAAEFWELGMEEPFPISAIHGSGTGDLLDKVIEYLPTITDVEEDTTIN 178


>gi|89072706|ref|ZP_01159271.1| GTP-binding protein EngA [Photobacterium sp. SKA34]
 gi|89051526|gb|EAR56980.1| GTP-binding protein EngA [Photobacterium sp. SKA34]
          Length = 500

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 27/204 (13%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           K ++S   ++     +     K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + 
Sbjct: 192 KANLSEADAEAAYKRLQEQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIY 251

Query: 260 IDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKE 313
           I ++ +G    + DTAGIR   ++    EK  + +T   VE+A+++LL+ +     S ++
Sbjct: 252 IPMERDGQEYVLIDTAGIRRRKNMHQAVEKFSVIQTLKAVEDANVVLLIIDARENISDQD 311

Query: 314 ISFP-----KNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGEGLE 352
           +S            +    K D      +E                  H IS+  G G+ 
Sbjct: 312 LSLLGFALNAGRSLVIAVNKWDGLDNEVKERVKSELDRRLGFVDFARIHFISALHGTGVG 371

Query: 353 ELINKIKSILSNKFKKLPFSIPSH 376
            L   +     +  K++  S+ + 
Sbjct: 372 HLYESVIEAYQSATKRISTSLLTR 395



 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 80/196 (40%), Gaps = 17/196 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      +LE +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYS 333
           + VE +  +++   +E AD++L L +  +    +          +      +  K D   
Sbjct: 65  EGVETKMAEQSLAAIEEADVVLFLVDGRAGLTAADEAIAKHLRSREKPTFLVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             +   +            ++    G+  L+ +  +  S+K           +       
Sbjct: 125 ADSACAEFWRLGVDAMYQIAATQNRGVTALMERALAPFSDKLNAELAEEGEEQELQLEDL 184

Query: 385 QTVRYLEMASLNEKDC 400
            +V  +E A+L+E D 
Sbjct: 185 TSVEDIEKANLSEADA 200


>gi|282900427|ref|ZP_06308377.1| Small GTP-binding protein domain protein [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194740|gb|EFA69687.1| Small GTP-binding protein domain protein [Cylindrospermopsis
           raciborskii CS-505]
          Length = 453

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 30/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +D+  +I Q +  +      K+ I+G  N GKSSL NA   ++ AIV+ I GTTRD 
Sbjct: 156 DLLDDLIQYIPQVEELQENTE-VKVAIVGRPNVGKSSLLNAFVGEERAIVSPISGTTRDT 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI-----N 309
           +   ++ EG   ++ DTAGIR+    +   E   I R F  +  AD++LL+ +       
Sbjct: 215 IDTLIEREGQAYRLIDTAGIRKKKHVEYGTEFFSINRAFKAIRRADVVLLVLDALDGVTE 274

Query: 310 SKKEIS---FPKNIDFIFIGTKSDLYST-----------------YTEEYD-HLISSFTG 348
             ++++          I +  K D+                    +TE  D   +S+ TG
Sbjct: 275 QDQKLAGRIVEDGRACIIVVNKWDVVEKDSYTIYDHEKSLEARLHFTEWADTIFVSAITG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + +E++++ +     +  +++  S+ +
Sbjct: 335 QRVEKILDLVNKAAESHKRRVSTSVVN 361



 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 19/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N LA    AIV D PG TRD        +     + DT G+   D
Sbjct: 6   VAIIGRPNVGKSTFVNRLAGDQTAIVHDEPGVTRDRTYRPAFWQNREFLVVDTGGLVFND 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIG--TKSDLY 332
           D        ++    +  A   + + +         ++   + +      +    K +  
Sbjct: 66  DTEFLPLIRQQAITALSEACAAIFVVDGQTGLTPADEEIAEWLRQQPVPTLLAVNKCESP 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILSN 364
                +               S+  G G  +L++ +   +  
Sbjct: 126 DQGIIQASEFWELGLGEPYPISAIHGSGTGDLLDDLIQYIPQ 167


>gi|213585218|ref|ZP_03367044.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 330

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 43  IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 102

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 103 RGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 162

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 163 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 222

Query: 373 IPSH 376
           + + 
Sbjct: 223 MLTR 226


>gi|148656306|ref|YP_001276511.1| GTP-binding protein Era [Roseiflexus sp. RS-1]
 gi|148568416|gb|ABQ90561.1| GTP-binding protein Era [Roseiflexus sp. RS-1]
          Length = 451

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 83/192 (43%), Gaps = 21/192 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL  + VAIV+  P TTR  +   L      +   DT G
Sbjct: 162 RSGF-VALVGRPNVGKSTLLNALLGQKVAIVSPKPQTTRTAIRGILSRPDAQIVFVDTPG 220

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
           I E  + +    +K+    + +AD++ ++ +I+            +        + +  K
Sbjct: 221 IHEPRNRLGAYMVKQARRAIPDADVVCMVVDISRPPGSLDERIAALVRKAQARRMLVLNK 280

Query: 329 SDLYSTYTEEY------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            DL +    E+            +  +S+  G+GL+ L+++I  +L       P    + 
Sbjct: 281 IDLPTRSGNEHLQAYRALAPWDMEVAVSALRGQGLDALVDEIVRLLPEGPPLYPEGQVTD 340

Query: 377 KRHLYHLSQTVR 388
           +      ++ VR
Sbjct: 341 QSERELAAELVR 352


>gi|281412785|ref|YP_003346864.1| ribosome-associated GTPase EngA [Thermotoga naphthophila RKU-10]
 gi|281373888|gb|ADA67450.1| ribosome-associated GTPase EngA [Thermotoga naphthophila RKU-10]
          Length = 439

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 110/286 (38%), Gaps = 41/286 (14%)

Query: 121 GKIDLL-EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           GK  +  E ESLAD +         ++         +      +    ++  + + L F 
Sbjct: 91  GKRGITKEDESLADFLRKSNVDTILVA---------NKAENLREFEREVKPELYS-LGFG 140

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   V    +  +   +  +   +       +    I +  K+ I+G  N GKS+LFNA+
Sbjct: 141 EPIPVSAEHNINLDTLLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAI 200

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE----TDDIVEKEGIKRTFLE 295
             K+ A+V+ IPGTTRD +  ++ ++G      DTAG+R         VEK    R    
Sbjct: 201 LNKERALVSPIPGTTRDPVDEEVFIDGKKYVFVDTAGLRRRSRVEPRTVEKYSNYRVVDS 260

Query: 296 VENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD------- 340
           +E AD+++++ +              +   +    + +  K DL     + YD       
Sbjct: 261 IEKADVVVIVLDATQGITRQDQRIAGLVERRGRASVVVFNKWDLVEHREKRYDEFTKLFR 320

Query: 341 -----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                         S+  G  ++ +I+ I    ++   K+P S  +
Sbjct: 321 EKLYFIDYSPLIFTSADKGWNVDRVIDAINLAYASYTTKVPSSAIN 366



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 20/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++I+G  N GKS+LFN L +K  AIV D  G TRD +   ++  G   K+ DT G+ +  
Sbjct: 4   VLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDIVEWYGKTFKLVDTCGVFDNP 63

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
            DI+ ++  + T   +  ADL+L + +          S  +     N+D I +  K++  
Sbjct: 64  QDIISQKMKEITLNMIREADLVLFVVDGKRGITKEDESLADFLRKSNVDTILVANKAENL 123

Query: 333 STYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +  E               +S+     L+ L+  I   L  K   L  
Sbjct: 124 REFEREVKPELYSLGFGEPIPVSAEHNINLDTLLETIIKKLEEKGLDLES 173


>gi|289811789|ref|ZP_06542418.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 377

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 90  IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 149

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 150 RGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 209

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 210 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 269

Query: 373 IPSH 376
           + + 
Sbjct: 270 MLTR 273


>gi|319651358|ref|ZP_08005487.1| GTP-binding protein EngA [Bacillus sp. 2_A_57_CT2]
 gi|317396889|gb|EFV77598.1| GTP-binding protein EngA [Bacillus sp. 2_A_57_CT2]
          Length = 436

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++ + H  +    E   +  K  ++G  N GKSSL NA+  ++  IV++I GTTRD 
Sbjct: 154 DLLDEAAKHFPKHGQTEYGEDVIKFSLIGRPNVGKSSLVNAMLGEERVIVSNIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +   + ++G    I DTAG+R+   +    EK  + R    +E +D++L++ +     I 
Sbjct: 214 IDSKVKVDGQEYVIIDTAGMRKKGKVYETTEKYSVLRALRAIERSDVVLVVIDGEEGIIE 273

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
             K I   +       + +  K D                              +S+ T 
Sbjct: 274 QDKRIAGYAHEAGRAVVIVVNKWDAVEKDERTMKAFEQNIREHFQFLDYAPIVFLSAKTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + +  LI  I +   N   ++  S+ +
Sbjct: 334 KRIHTLIPMINTASENHALRVETSVLN 360



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +   ++   +  + ++ AD+I+ L      + S  E    I +      +    K D   
Sbjct: 66  EPFLEQIRLQAEIAIDEADVIIFLVNGREGVTSADEEVAKILYKAKKPVVLGVNKIDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                YD           IS   G GL +L+++         +  
Sbjct: 126 MRDLVYDFYALGFGEPFPISGSHGLGLGDLLDEAAKHFPKHGQTE 170


>gi|56751772|ref|YP_172473.1| GTP-binding protein EngA [Synechococcus elongatus PCC 6301]
 gi|81301149|ref|YP_401357.1| GTP-binding protein EngA [Synechococcus elongatus PCC 7942]
 gi|81820595|sp|Q5N167|DER_SYNP6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123556312|sp|Q31KP9|DER_SYNE7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|56686731|dbj|BAD79953.1| GTP-binding protein engA [Synechococcus elongatus PCC 6301]
 gi|81170030|gb|ABB58370.1| Small GTP-binding protein domain [Synechococcus elongatus PCC 7942]
          Length = 453

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 88/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   +              + I+G  N GKSSL N+   +  AIV+ I GTTRD 
Sbjct: 156 ELLDRVLELLPPADEAAGDETEIGVAIVGRPNVGKSSLLNSFLGEQRAIVSPIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +   ++      ++ DTAGIR     D   E  GI R+F  +  AD+ LL+ ++      
Sbjct: 216 IDTVIERNDQRYRLVDTAGIRRKRGVDYGPEFFGINRSFKAIRRADVCLLVIDVLDGVTD 275

Query: 309 -NSKKEISFPKNIDFIF-IGTKSD--------LYSTYTEEYD----------HLISSFTG 348
            + K      ++      +  K D        +Y    +  D            +S+ TG
Sbjct: 276 QDQKLAGRIEEDGRACVIVVNKWDAHEKDSSTIYEVERQLRDRLYFLDWAPMIFVSALTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + +E++++++ +++    +++  S+ +
Sbjct: 336 QRVEKILDQVNTVVEQHRRRVGTSVIN 362



 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 56/177 (31%), Gaps = 35/177 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+L N LA    AIV D PG TRD    +         + DT G+   D
Sbjct: 6   VAILGRPNVGKSTLVNRLAGSREAIVHDEPGVTRDRTYQEAFWCDRDFTVVDTGGLVFDD 65

Query: 282 DIVEKEGIKRTFLE-----------------VENADLILLLKEINSKKEISFPKNIDFIF 324
           D      I+                      +  AD        N   +    +N   + 
Sbjct: 66  DTEFLPLIREQAELALAEAALAVLVVDGQAGLTAAD--------NEIADWLRHQNRPIVV 117

Query: 325 IGTKSDLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPF 371
              K +       +               SS  G G  EL++++  +L    +    
Sbjct: 118 AVNKCESPDKGAAQAAEFWSLGFGEPLPISSIHGSGTGELLDRVLELLPPADEAAGD 174


>gi|291618407|ref|YP_003521149.1| EngA [Pantoea ananatis LMG 20103]
 gi|291153437|gb|ADD78021.1| EngA [Pantoea ananatis LMG 20103]
 gi|327394799|dbj|BAK12221.1| GTP-binding protein EngA [Pantoea ananatis AJ13355]
          Length = 494

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 206 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 265

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 266 RGKITDTVEKFSVIKTLQAIEDANVVMLVIDARAGISDQDLSLLGFILNSGRSLVIVVNK 325

Query: 329 SD-LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D L     +E                 H IS+  G G+  L   +        K++  S
Sbjct: 326 WDGLSQEVRDEVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVTEAYDCSTKRVNTS 385

Query: 373 IPSH 376
           + + 
Sbjct: 386 LLTR 389



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +       + ++I+     +      +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGMMAADQQIAKHLRSRQKATFLVANKTDGLD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN 356
                 D         H I++  G G+  L+ 
Sbjct: 125 PDQAVVDFYSLGLGEIHAIAASHGRGVTSLLE 156


>gi|227364908|ref|ZP_03848953.1| GTP-binding protein EngA [Lactobacillus reuteri MM2-3]
 gi|325682467|ref|ZP_08161984.1| ribosome-associated GTPase EngA [Lactobacillus reuteri MM4-1A]
 gi|227070055|gb|EEI08433.1| GTP-binding protein EngA [Lactobacillus reuteri MM2-3]
 gi|324978306|gb|EGC15256.1| ribosome-associated GTPase EngA [Lactobacillus reuteri MM4-1A]
          Length = 440

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 18/179 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E + N   + ++G  N GKS+LFN +A + ++IV D PG TRD +    +  G    + D
Sbjct: 2   ERLANPI-VAVVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKHFSMID 60

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           T GI  +D  +  +  ++  + ++ AD+I+ + ++ +           I +  N   +  
Sbjct: 61  TGGIEISDQPLLTQIRQQAEIAIDEADVIIFVADVENGVTDADEQVARILYRSNKPVVLA 120

Query: 326 GTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
             K D     ++ YD+          +SS  G G+ +L++ +     +           
Sbjct: 121 VNKVDNPERRSDIYDYYSLGLGEPYAVSSVHGIGMGDLLDAVIKEFPDNAANDEDDSIH 179



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 86/210 (40%), Gaps = 37/210 (17%)

Query: 201 NDISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           + + + I +          +      +G  N GKSSL NA+  ++  IV+++ GTTRD +
Sbjct: 157 DLLDAVIKEFPDNAANDEDDSIHFSFIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAI 216

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
               +  +G    + DTAGIR+   I    E+  + R+   ++++D++L++  +N+++ I
Sbjct: 217 NTQFETADGQKFTMVDTAGIRKKGKIYENTERYSLMRSMRAIDDSDVVLVV--LNAEEGI 274

Query: 315 ----------SFPKNIDFIFIGTKSDLYSTYTEE-------------------YDHLISS 345
                     +       I +  K D                               +S+
Sbjct: 275 RELDKHIAGYAHEAGCGVIIVVNKWDTLKEKDHRTMTDFTNLIRQEFQYLSYAPIIFVSA 334

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   I+ +  +  +++  ++ +
Sbjct: 335 KTKQRLNQLPGLIEEVYQHHRQRIQSAVLN 364


>gi|213649668|ref|ZP_03379721.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 339

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 52  IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 111

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 112 RGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 171

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 172 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 231

Query: 373 IPSH 376
           + + 
Sbjct: 232 MLTR 235


>gi|257093699|ref|YP_003167340.1| GTP-binding protein EngA [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046223|gb|ACV35411.1| small GTP-binding protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 492

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 68/315 (21%), Positives = 120/315 (38%), Gaps = 52/315 (16%)

Query: 121 GKIDLLEAESLADLISSETEMQRRLS------MEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           G  + L  + +   ++ +TE     +      ++G SG L++L  +  ++L  +   +  
Sbjct: 58  GGFEPLAKDGIMYHMARQTEQAIDEADVVILVVDGRSG-LTALDKEIANRLRKVDRPVLV 116

Query: 175 DLDFSEEE-------DVQNFSSKEVLNDILFLKNDISSHIS-------QGKLGEIIRNGY 220
            ++ SE         D       E L         + + I        +    E   +  
Sbjct: 117 AVNKSEGMSVGVVVSDFHELGLGEPLAISAAHGEGVRALIDLALEPCAEAVESEPESDVV 176

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L NAL  +D  I  D PGTTRD + +D +  G    + DTAG+R  
Sbjct: 177 KVAIVGRPNVGKSTLINALLGEDRVIAFDQPGTTRDAIEVDFERGGKKYTLIDTAGLRRR 236

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG----------T 327
             +    EK  + +T   VE+A +++L+ +  ++++I+        FI            
Sbjct: 237 GRVFETIEKFSVIKTLQAVEDAQVVILVLD--ARQDIAEQDAHIAAFIRESGRALVVAVN 294

Query: 328 KSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           K D   +Y  E                  H +S+  G+GLE L   + +        LP 
Sbjct: 295 KWDGLDSYVREQIKGALEGQLGFIDFARFHYVSALRGQGLEPLFRSVDAAYRAAIADLPT 354

Query: 372 SIPSHKRHLYHLSQT 386
              +         Q 
Sbjct: 355 PQLTRTLSEAVARQA 369



 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           IV++G  N GKS+LFN L +   A+V D+PG TRD       L      + DT G     
Sbjct: 5   IVLVGRPNVGKSTLFNRLTRTRDALVADLPGLTRDRHYGHGKLGSKPYLVIDTGGFEPLA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLY 332
            D +     ++T   ++ AD+++L+ +  S      KEI+      +   +    KS+  
Sbjct: 65  KDGIMYHMARQTEQAIDEADVVILVVDGRSGLTALDKEIANRLRKVDRPVLVAVNKSEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           S      D           IS+  GEG+  LI+      +   +  P S
Sbjct: 125 SVGVVVSDFHELGLGEPLAISAAHGEGVRALIDLALEPCAEAVESEPES 173


>gi|253576396|ref|ZP_04853726.1| ribosome-associated GTPase EngA [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844289|gb|EES72307.1| ribosome-associated GTPase EngA [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 442

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 15/150 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I+ ++ +    E   +  ++ ++G  N GKSSL NA+  ++  IV+DI GTTRD 
Sbjct: 157 DLLDAIADNLPELADDEYDDDVIRVALIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDA 216

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    + +G    + DTAG+R+   +    EK  + R    +E AD++L+L  IN ++ I
Sbjct: 217 IDTPFEKDGQRYVLIDTAGMRKRGKVYETTEKYSVMRAMKAIERADVVLVL--INGEEGI 274

Query: 315 ----------SFPKNIDFIFIGTKSDLYST 334
                     ++      IF+  K D+   
Sbjct: 275 IEQDKHIAGYAYEAGKASIFVVNKWDVVEK 304



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS++FN +    +AIV D PG TRD +    +  G    I DT GI  + 
Sbjct: 8   VAIVGRPNVGKSTIFNRIIGDRLAIVEDKPGITRDRIYGASEWNGKPFSIIDTGGIELDD 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           ++ + K    +  L +E AD+I+ + +  +           + +      I    K D  
Sbjct: 68  EEPILKSIRMQAELAIEEADVIVFMCDAKAGVTTSDEEVANLLYRSGKPVIVAVNKVDNI 127

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSN 364
                 Y+            S   G G+ +L++ I   L  
Sbjct: 128 GRIDNIYEFYNLGFGEPIGVSGSHGTGIGDLLDAIADNLPE 168


>gi|209763424|gb|ACI80024.1| putative GTP-binding factor [Escherichia coli]
          Length = 503

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 216 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 275

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 276 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 335

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D      +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 336 WDGLRQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 395

Query: 373 IPSH 376
           + + 
Sbjct: 396 MLTR 399



 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 8   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 67

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 68  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 127

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 128 LVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 171


>gi|323499818|ref|ZP_08104777.1| GTP-binding protein Der [Vibrio sinaloensis DSM 21326]
 gi|323315059|gb|EGA68111.1| GTP-binding protein Der [Vibrio sinaloensis DSM 21326]
          Length = 494

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 103/257 (40%), Gaps = 33/257 (12%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           M  ++          ID   +  +    +    E ED+  F  +E        +      
Sbjct: 140 MYQIAAAHGRGVTALIDLALNPFAEKLLEESKGELEDLTGFEDEEQDKLDYTEEE----- 194

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ +   +     K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G
Sbjct: 195 -AEQEFNRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDG 253

Query: 267 YLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP--- 317
               + DTAG+R    I    EK  + +T   VE+A++++L+ +     S +++S     
Sbjct: 254 REYVLIDTAGVRRRTRINETVEKFSVVKTLKAVEDANVVMLVIDARENISDQDLSLLGFA 313

Query: 318 --KNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIK 359
                  +    K D   T  +E+                 H IS+  G G+  L   ++
Sbjct: 314 LNAGRSIVIAVNKWDGLDTDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQ 373

Query: 360 SILSNKFKKLPFSIPSH 376
               +   ++  S+ + 
Sbjct: 374 EAYKSATTRVGTSVLTR 390



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 75/208 (36%), Gaps = 22/208 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +    +               + +  K D   
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFMVDGRAGLTAADEAIAQHLRKLEKPSMLVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINK-----IKSILSNKFKKLPFSIPSHKRH 379
                 +            ++  G G+  LI+       + +L     +L          
Sbjct: 125 ADAASAEFWQLGVENMYQIAAAHGRGVTALIDLALNPFAEKLLEESKGELEDLTGFEDEE 184

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAE 407
              L  T    E      +D  + +   
Sbjct: 185 QDKLDYTEEEAEQEFNRLQDQPIKLAII 212


>gi|284929084|ref|YP_003421606.1| ribosome-associated GTPase EngA [cyanobacterium UCYN-A]
 gi|284809543|gb|ADB95248.1| ribosome-associated GTPase EngA [cyanobacterium UCYN-A]
          Length = 452

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 12/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
              + +  H+              + I+G  N GKSSL NA   +  AIV+ I GTTRDV
Sbjct: 156 EFLDKLILHLPSSNKMFDPEE-INVSIVGRPNVGKSSLLNAFLGEKRAIVSPIAGTTRDV 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINS---K 311
           +   ++ +G + ++ DTAGIR   ++    E   I R F  +  AD++LL+ +      +
Sbjct: 215 IDTIVERKGKVYRLVDTAGIRRKKNVEYGAEFFSINRAFKAIRRADVVLLVIDAIDGVTE 274

Query: 312 KEISFP-----KNIDFIFIGTKSDLYST 334
           ++I        +    I +  K D    
Sbjct: 275 QDIKLADRIIDEGRSAIIVVNKWDAVEK 302



 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 19/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N LAK   AIV D PG TRD +        +   + DT G+   D
Sbjct: 6   VAVIGRPNVGKSTLVNRLAKNRQAIVHDEPGITRDRVYRQAFWRTHDFLVVDTGGLVFND 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLY 332
           +        ++    +  A + + + +          EI      + +  +    K +  
Sbjct: 66  NTEFLPLIREQAMTALSEASVAVFVVDGQLGPTTGDYEIGNWLRQQKVPVLLAVNKCESP 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLP 370
                +               S   G G  E ++K+   L +  K   
Sbjct: 126 EHGLIQAAQFWELGLGEPYPISGIHGNGTGEFLDKLILHLPSSNKMFD 173


>gi|213028788|ref|ZP_03343235.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 365

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 78  IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 137

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 138 RGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 197

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 198 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 257

Query: 373 IPSH 376
           + + 
Sbjct: 258 MLTR 261


>gi|300812163|ref|ZP_07092607.1| ribosome-associated GTPase EngA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496848|gb|EFK31926.1| ribosome-associated GTPase EngA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 435

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + VAIV D PG TRD         G+   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTLFNRIINERVAIVEDRPGVTRDRNYARASWMGHQFSIIDTGGITWED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +++E   +  + +E AD+I++L + +            + +  +   +    K+D   
Sbjct: 66  STIDEEIRAQAEIAIEEADVIVMLADASQGVTSLDERIAHLLYRADKPVLLAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             T+ YD           +S   G G+ +L++++        +K    + 
Sbjct: 126 QRTDIYDFYSLGLGDPIPVSGSHGTGIGDLLDEVVKNFPADAEKTEEGVI 175



 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 102/292 (34%), Gaps = 47/292 (16%)

Query: 131 LADLISSETEMQRRLS--------MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           + + I ++ E+    +               L       + +            D  E+ 
Sbjct: 68  IDEEIRAQAEIAIEEADVIVMLADASQGVTSLDERIAHLLYRADKPVLLAVNKADNPEQR 127

Query: 183 DVQNFSSKEVLNDIL--------FLKNDISSHISQGKL-GEIIRNG-YKIVILGHSNAGK 232
                     L D +         + + +   +       E    G     ++G  N GK
Sbjct: 128 TDIYDFYSLGLGDPIPVSGSHGTGIGDLLDEVVKNFPADAEKTEEGVISFSVIGRPNVGK 187

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGI 289
           SS+ N L  ++  IV +  GTTRD +      +G   ++ DTAGIR    +    EK  +
Sbjct: 188 SSIVNRLLGEERVIVANEEGTTRDAIDTPFVKDGTKFRVVDTAGIRRRGKVYEKTEKYSV 247

Query: 290 KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST------- 334
            R    +E +D+ +L+ + ++            +    +  I    K DL          
Sbjct: 248 MRAMSAMERSDVAILVLDASTGIREQDKHVAGYAHEAGLGMIIAVNKWDLPKKDSSSGKD 307

Query: 335 ----YTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                 EE+ +        +S+ TG+ +++L   +K +  NK +++  S+ +
Sbjct: 308 FEAVIREEFSYLDYAPIVFVSAKTGKNVDQLPKMVKEVYENKNQRIQSSVLN 359


>gi|15606936|ref|NP_214317.1| GTP binding protein Era [Aquifex aeolicus VF5]
 gi|8134426|sp|O67749|DER_AQUAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|2984183|gb|AAC07715.1| GTP binding protein Era [Aquifex aeolicus VF5]
          Length = 433

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 104/244 (42%), Gaps = 27/244 (11%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
           ++K+ ++R        ++   +     S +    +  L +++  ++ + K+ E +  G K
Sbjct: 118 VNKIDNLRQEKNVAEFYTLGFEKIFPISAQHGKGVGELLDEVVKYLKEEKV-ETVEEGIK 176

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G  N GKSSL NA+ K +  IV+ I GTTRD + I    +     + DTAG+R   
Sbjct: 177 VAFIGRPNVGKSSLVNAILKDERVIVSPIAGTTRDAIEIPFRWKDKNFILIDTAGVRRPS 236

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD 330
           ++   +E   + R+   ++ AD+  L+ + +            +   +    + +  K D
Sbjct: 237 NVEYGIEFYSVGRSLKAIDLADVCCLVIDASEGPTRQDKRLGGLIERRYKGCVIVANKMD 296

Query: 331 LYSTYTEE-----------YDHLISSFT----GEGLEELINKIKSILSNKFKKLPFSIPS 375
           +     EE            D     FT    G+G+EEL+N I  +  +  K+   S  +
Sbjct: 297 ISPWSEEELEGIIRKELFFLDFAPIVFTVATKGKGVEELLNWIDVVYKDYTKQHKTSFVN 356

Query: 376 HKRH 379
              H
Sbjct: 357 RAVH 360



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 18/160 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           ++VI+G  N GKS+LFN +  K  AIV D PG TRD +    +  G    I DT G+  E
Sbjct: 4   RVVIIGRPNVGKSTLFNRIIGKRYAIVEDYPGVTRDKIEAKAEWAGKEFIIVDTGGLVPE 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDL 331
           T D + +E  K    E+  AD+IL + +         +EI+   +P     + +  K D 
Sbjct: 64  TKDELIREVKKVVEQEIPKADVILFVVDGKEGLNPLDQEIAKYLYPYADKVLLVVNKIDN 123

Query: 332 YSTYTE---------EYDHLISSFTGEGLEELINKIKSIL 362
                          E    IS+  G+G+ EL++++   L
Sbjct: 124 LRQEKNVAEFYTLGFEKIFPISAQHGKGVGELLDEVVKYL 163


>gi|58426746|gb|AAW75783.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 490

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 101/266 (37%), Gaps = 41/266 (15%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE-----------VLNDI 196
                 L      W+ KL      +   +D ++EE V++  ++                I
Sbjct: 118 REGESSLDDEILAWLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGI 177

Query: 197 LFLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             L  ++ + + +   GE++ N     +I  +G  N GKS+L N L  ++  I +++PGT
Sbjct: 178 DELLEEVGARLPEEGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGT 237

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           TRD + +DL+ +G   ++ DTAG+R   + ++ VEK    +T   +E   + +L+ +   
Sbjct: 238 TRDSIAVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIERCQVAVLMLDATE 297

Query: 311 K--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSF 346
                               +    K D  S Y                       IS+ 
Sbjct: 298 GVTDQDATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVSWAEAVRISAL 357

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS 372
            G G+ EL   I    ++   +   S
Sbjct: 358 HGSGMRELFQAIHRAHASATHEFSTS 383



 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + ++G  N GKS++FNAL +   A+V D PG TRD       L+      + DT GI   
Sbjct: 30  VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 89

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDLY 332
           +D +     ++       ADL+L + +          + +++ +      + +  K D  
Sbjct: 90  EDGLAGATARQARAAAGEADLVLFVVDGREGESSLDDEILAWLRKLARPTVLVINKIDGT 149

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKL 369
              T   +            S+   +G++EL+ ++ + L  +    
Sbjct: 150 DEETVRSEFARYGFSDVVALSAAHRQGIDELLEEVGARLPEEGSGE 195


>gi|330997747|ref|ZP_08321586.1| ribosome biogenesis GTPase Der [Paraprevotella xylaniphila YIT
           11841]
 gi|329569846|gb|EGG51604.1| ribosome biogenesis GTPase Der [Paraprevotella xylaniphila YIT
           11841]
          Length = 437

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I S   +    E   N  +  ++G  N GKSSL NA   ++  IVTDI GTTRD 
Sbjct: 154 ELLDQIVSKFPKTIDDETDENIPRFAVVGRPNVGKSSLINAFIGEERNIVTDIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +       G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYTKFGFDFYLVDTAGIRRKNKVTEDLEYYSVMRSIRAIENSDVCILMLDAERGIEA 273

Query: 315 SFP--------KNIDFIFIGTKSDLYST-------------------YTEEYDHLISSFT 347
                       N   + +  K DL                      + +      S+ T
Sbjct: 274 QDLNIFQLIQRNNKSLVVVVNKWDLVEEKNTVVMNEYEYAIRNRMAPFDDFPIIFASALT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + +++   K +  N+ K++P S
Sbjct: 334 KQRIFKVLETAKEVYQNRKKRVPTS 358



 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 73/176 (41%), Gaps = 18/176 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L +   AIV+D  GTTRD      +  G    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTQTRHAIVSDEAGTTRDRQYGKSEWTGCEFSVIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
             +DDI E+E  K+  L  E AD++L L ++         +   I        I +  K+
Sbjct: 62  VNSDDIFEEEIRKQVTLATEEADVVLFLVDVRNGVTDLDEAVANILRRTKKPVILVANKA 121

Query: 330 DL---------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           D          +        + IS+ TG G  EL+++I S                
Sbjct: 122 DTNEWIYSAAEFYALGLGDPYCISAATGSGTGELLDQIVSKFPKTIDDETDENIPR 177


>gi|150016018|ref|YP_001308272.1| GTP-binding protein EngA [Clostridium beijerinckii NCIMB 8052]
 gi|189037141|sp|A6LSI6|DER_CLOB8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|149902483|gb|ABR33316.1| small GTP-binding protein [Clostridium beijerinckii NCIMB 8052]
          Length = 438

 Score =  119 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 11/156 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++  H  +    E      +I ++G  N GKSSL N L  ++  IV+DIPGTTRD 
Sbjct: 155 DMLDEVVKHFDKSIYDEEDDEYIRIAMIGKPNVGKSSLINKLLGEERVIVSDIPGTTRDS 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +   L+ E     + DTAG+R      + +E+  + RT+  +E AD+ +L+ +       
Sbjct: 215 IDSHLETEEGKFILVDTAGLRRKSKVKEEIERYSVIRTYAAIERADVCILMIDATEGITE 274

Query: 315 SFPK--------NIDFIFIGTKSDLYSTYTEEYDHL 342
              K            + I  K DL     +  D  
Sbjct: 275 QDEKIIGYAHELRKAIMVIVNKWDLVEKDDKTLDKF 310



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K ++IV D PG TRD +  + +   Y   + DT GI  E 
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLRYNFTMIDTGGIEPEN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           +DI+ K+  ++  + +E AD+I+ + +         N    +        + +  K D  
Sbjct: 66  NDIIIKQMRRQANIAIETADVIIFIVDGKEGLTAADNEVATMLRKSKKPVVLVVNKVDNL 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 Y+            S+  G GL ++++++              
Sbjct: 126 KDENNAYEFYNLGIGDPMAISAGQGLGLGDMLDEVVKHFDKSIYDEEDD 174


>gi|313123537|ref|YP_004033796.1| GTP-binding protein enga [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280100|gb|ADQ60819.1| GTP-binding protein engA [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|325684298|gb|EGD26471.1| ribosome-associated GTPase EngA [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 435

 Score =  119 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + VAIV D PG TRD         G+   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTLFNRIINERVAIVEDRPGVTRDRNYARASWMGHQFSIIDTGGITWED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +++E   +  + +E AD+I++L + +            + +  +   +    K+D   
Sbjct: 66  STIDEEIRAQAEIAIEEADVIVMLADASQGVTSLDERIAHLLYRADKPVLLAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             T+ YD           +S   G G+ +L++++        +K    + 
Sbjct: 126 QRTDIYDFYSLGLGDPIPVSGSHGTGIGDLLDEVVKNFPADAEKTEEGVI 175



 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 102/292 (34%), Gaps = 47/292 (16%)

Query: 131 LADLISSETEMQRRLS--------MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           + + I ++ E+    +               L       + +            D  E+ 
Sbjct: 68  IDEEIRAQAEIAIEEADVIVMLADASQGVTSLDERIAHLLYRADKPVLLAVNKADNPEQR 127

Query: 183 DVQNFSSKEVLNDIL--------FLKNDISSHISQGKL-GEIIRNG-YKIVILGHSNAGK 232
                     L D +         + + +   +       E    G     ++G  N GK
Sbjct: 128 TDIYDFYSLGLGDPIPVSGSHGTGIGDLLDEVVKNFPADAEKTEEGVISFSVIGRPNVGK 187

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGI 289
           SS+ N L  ++  IV +  GTTRD +      +G   ++ DTAGIR    +    EK  +
Sbjct: 188 SSIVNRLLGEERVIVANEEGTTRDAIDTPFVKDGTKFRVVDTAGIRRRGKVYEKTEKYSV 247

Query: 290 KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST------- 334
            R    +E +D+ +L+ + ++            +    +  I    K DL          
Sbjct: 248 MRAMSAMERSDVAILVLDASTGIREQDKHVAGYAHEAGLGMIIAVNKWDLPKKDSSSGKD 307

Query: 335 ----YTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                 EE+ +        +S+ TG+ +++L   +K +  NK +++  S+ +
Sbjct: 308 FEAVIREEFSYLDYAPIVFVSAKTGKNIDQLPKMVKEVYENKNQRIQSSVLN 359


>gi|71279565|ref|YP_270897.1| GTP-binding protein EngA [Colwellia psychrerythraea 34H]
 gi|123733686|sp|Q47WC5|DER_COLP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|71145305|gb|AAZ25778.1| GTP-binding protein EngA [Colwellia psychrerythraea 34H]
          Length = 498

 Score =  119 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 99/235 (42%), Gaps = 30/235 (12%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
           HI    +  ++  E  + +   +     D+   + +++  +          +  K+ I+G
Sbjct: 163 HIEELGKPKVEEGEASEGEFDDAFFSDKDVELTEEELAKKLEDEPQEN---DKIKLAIIG 219

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DI 283
             N GKS+L N +  ++  +V D+PGTTRD + I ++  G    + DTAGIR      D+
Sbjct: 220 RPNVGKSTLTNRILGEERVVVYDMPGTTRDSVYIPMERNGREYTLIDTAGIRRRKNVTDV 279

Query: 284 VEKEGIKRTFLEVENADLILLLKEIN---SKKEIS-----FPKNIDFIFIGTKSDLYSTY 335
           VEK  + +T   +E+A++ LL+ +     S +++S            +    K D    +
Sbjct: 280 VEKYSVIKTLRAIEDANVCLLIIDAQEGISDQDLSLLGFILEAGRSLVLAVNKWDGLEDH 339

Query: 336 TEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            ++                  H IS+  G G+  L   ++    +  K++  ++ 
Sbjct: 340 EKDRIKTELDRRLGFIDFARVHFISALHGTGVGHLYESVEEAFVSATKRISTAMV 394



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 18/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++E +   + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADYPGLTRDRQYGQAEVEEHPFIVIDTGGINGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD--- 330
             ++ +  +++ + +E AD +L L +             +    +N     +  K D   
Sbjct: 65  QGIDVKMAEQSLMAIEEADAVLFLVDARDGLTAADHGIADHLRKQNKKIFVVANKIDGIH 124

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELI 355
                   YS    E+ H I++  G G+ +L+
Sbjct: 125 GDSAVAEFYSLGLGEHVHQIAAAHGRGVTQLL 156


>gi|291613885|ref|YP_003524042.1| ribosome-associated GTPase EngA [Sideroxydans lithotrophicus ES-1]
 gi|291583997|gb|ADE11655.1| ribosome-associated GTPase EngA [Sideroxydans lithotrophicus ES-1]
          Length = 465

 Score =  119 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 62/312 (19%), Positives = 115/312 (36%), Gaps = 49/312 (15%)

Query: 121 GKIDLLEAESLADLISSETEMQRRLS---------MEGMSGELSSLYGQWIDKLTHIRSF 171
           G ++ +  E +   ++ +T      +          +G++ +   +  Q       +   
Sbjct: 58  GGLEPVAKEGIMHEMAKQTRQAVDEADLVLFIVDGRDGLTPQDRIIATQLRKTGRPVMLL 117

Query: 172 IE---------ADLDFSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
           +             DF E    +    SS    N    ++  +    +     E   +  
Sbjct: 118 VNKAEGMRRERVTADFHELGLGEPIPISSAHGDNVAEMIEVALDELPAAEVEAEEKSDHP 177

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L NA+  ++  I  D PGTTRD + ID +  G    I DTAGIR  
Sbjct: 178 KLAIVGRPNVGKSTLVNAILGEERVIAFDQPGTTRDSIYIDFERAGRQYTIIDTAGIRRR 237

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
            + D+ +EK  + +T   +E+A++++L+ +   +         +         +    K 
Sbjct: 238 GKIDEAIEKFSVVKTLQAIEDANVVVLVVDARDQITEQDAHLADFVLQAGRALVLAVNKW 297

Query: 330 DLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           D    Y  +                  H IS+  G G++ L+  +    +    K+P   
Sbjct: 298 DGLDEYKRDTVKRDIERKLHFLSFAKHHFISALNGTGVDALLKSVNQAYTAAMTKMPT-- 355

Query: 374 PSHKRHLYHLSQ 385
           P   R L    Q
Sbjct: 356 PQLTRVLEEALQ 367



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 20/154 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           +V++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G+    
Sbjct: 5   LVLVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGRGRVGERPYLVVDTGGLEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
            + +  E  K+T   V+ ADL+L + +                       + +  K    
Sbjct: 65  KEGIMHEMAKQTRQAVDEADLVLFIVDGRDGLTPQDRIIATQLRKTGRPVMLLVNKAEGM 124

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELIN 356
                 +D +     E    ISS  G+ + E+I 
Sbjct: 125 RRERVTADFHELGLGE-PIPISSAHGDNVAEMIE 157


>gi|169334783|ref|ZP_02861976.1| hypothetical protein ANASTE_01189 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257521|gb|EDS71487.1| hypothetical protein ANASTE_01189 [Anaerofustis stercorihominis DSM
           17244]
          Length = 439

 Score =  119 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 67/151 (44%), Gaps = 11/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H  + K G       KI ++G  NAGKSSL N L  ++  IV++I GTTRD 
Sbjct: 155 DLLDEVVKHFPENKKGVEEEERTKIAVVGKPNAGKSSLVNTLLGENRVIVSNISGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +    + EG    + DTAGIR      D +E     R    +E AD+ LL+ +       
Sbjct: 215 IDTIFNYEGKNYTLIDTAGIRRKAKIYDDIEHYSTIRAIGAIERADICLLMIDAMEGVTD 274

Query: 309 NSKKEISFPKNID--FIFIGTKSDLYSTYTE 337
              K     K+     I +  K DL    T 
Sbjct: 275 QDVKIAGLIKDRYKAVIIVINKWDLVEKETN 305



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 19/174 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R  + + ++G  N GKS+LFN ++ K ++IV D PG TRD +  D    G    + DT 
Sbjct: 1   MREPF-VALIGRPNTGKSTLFNKISGKRISIVEDTPGVTRDRIITDTSWSGNSFFLIDTG 59

Query: 276 GIR-ETDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIG-- 326
           GI  ++DD++ K+  ++  L ++ AD+I+L+ +       + ++  +  +      +   
Sbjct: 60  GIEPKSDDVILKQMKRQANLAIDMADVIVLVVDGRAGVTASDREVATMIRKSGKPCVLAV 119

Query: 327 TKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
            K D +      Y+            S+    G  +L++++        K +  
Sbjct: 120 NKIDSFDIDYLRYEFYDLALGEPIGISAEHALGFGDLLDEVVKHFPENKKGVEE 173


>gi|283769536|ref|ZP_06342432.1| ribosome-associated GTPase EngA [Bulleidia extructa W1219]
 gi|283103804|gb|EFC05190.1| ribosome-associated GTPase EngA [Bulleidia extructa W1219]
          Length = 437

 Score =  119 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 11/127 (8%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G K+ ++G  N GKSSL NA+  ++ AIV++I GTTRD +      EG    I DTAGIR
Sbjct: 174 GVKMAVIGEPNVGKSSLVNAILNEERAIVSNIQGTTRDAIDTPFTHEGKPYIIVDTAGIR 233

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           +   I    EK  + R    +E  D++L + +  +            +   N   I +  
Sbjct: 234 KRGKIYESIEKYSVLRAMRAIERCDVVLFVMDGEAGIREQDKHVAGYAVEMNKPIIIVVN 293

Query: 328 KSDLYST 334
           K D+   
Sbjct: 294 KWDIVEK 300



 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 17/163 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N GKS++FN L  + ++IV DIPG TRD L    +  G   ++ DT GI+ 
Sbjct: 4   MVVAIVGRPNVGKSTIFNRLVGERMSIVEDIPGVTRDRLYGSAEWAGNSFRVIDTGGIQL 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL 331
            +   + E   +  + +E AD+IL++ +              +        +    + D 
Sbjct: 64  ANQPFQTEIRAQVDIAMEEADVILMVCDGQMGVMEDDRFIAGLLQKNKKPVVLAVNRIDD 123

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
            S     Y+            S   G G+ +++++   ++  +
Sbjct: 124 QSRMVNIYEFYELGLGDPMACSGIHGVGVGDVLDRCFELMPKR 166


>gi|225389099|ref|ZP_03758823.1| hypothetical protein CLOSTASPAR_02845 [Clostridium asparagiforme
           DSM 15981]
 gi|225044833|gb|EEG55079.1| hypothetical protein CLOSTASPAR_02845 [Clostridium asparagiforme
           DSM 15981]
          Length = 441

 Score =  119 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 23/176 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  +    KL E      +I ++G  N GKSS+ N L  ++  IV+DI GTTRD 
Sbjct: 156 DLLDEVVKYFDCAKLEEEEDERPRIAVVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++  +G      DTAG+R    I    E+  I RT   VE AD+++++ +       
Sbjct: 216 VDTEIVHDGTPYVFIDTAGLRRKSKIHEELERYSIIRTVTAVERADIVVVVIDAKEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  I+  +    I    K D                  + + E  NK+K IL
Sbjct: 276 QDAKIAGIAHERGKGIIVAVNKWDAIEK------------NDKTIYEYTNKLKEIL 319



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  D         + DT GI  +T
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGETISIVKDTPGVTRDRIYADCSWLNMNFTLIDTGGIEPDT 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D++  +  ++  + +  AD+I+ + ++            ++        +    K D Y
Sbjct: 66  SDVILSQMREQAEIAIATADVIVFIVDVRQGLVDADTKVADMLRKSRKPVVLAVNKVDSY 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +  +              +S+ +  G+ +L++++         +    
Sbjct: 126 EKFGNDVYEFYNLGIGDPVPVSAASRLGIGDLLDEVVKYFDCAKLEEEED 175


>gi|325272131|ref|ZP_08138563.1| GTP-binding protein Der [Pseudomonas sp. TJI-51]
 gi|324102727|gb|EGC00142.1| GTP-binding protein Der [Pseudomonas sp. TJI-51]
          Length = 487

 Score =  119 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 32/207 (15%)

Query: 198 FLKNDISSHISQGKLGEII-----RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
            ++  + + +++G+    I     ++G KI I+G  N GKS+L N +  ++  +V D PG
Sbjct: 166 QVEEALDADVAEGEEAVRIPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDQPG 225

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN 309
           TTRD + I  + +G      DTAG+R+   I    EK  + +T   +++A++++ + +  
Sbjct: 226 TTRDSIYIPFERDGEKYTFIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAR 285

Query: 310 SK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISS 345
                        +       +    K D       +Y                 H IS+
Sbjct: 286 EGVVDHDLNLLGFALEAGRAIVIALNKWDGMQPGERDYVKTELERRLFFVDFADIHFISA 345

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS 372
             G G+  L   +++   +   + P S
Sbjct: 346 LHGTGVGNLYKSVQAAFKSAVTRWPTS 372



 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L K   AIV D+ G TRD    D   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ + +E AD +L L +  +          E    +N + I +  K D
Sbjct: 65  VGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKEAILVANKID 121


>gi|288818845|ref|YP_003433193.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
 gi|288788245|dbj|BAI69992.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
 gi|308752432|gb|ADO45915.1| ribosome-associated GTPase EngA [Hydrogenobacter thermophilus TK-6]
          Length = 432

 Score =  119 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 90/216 (41%), Gaps = 27/216 (12%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L + + S +    + ++  +G K+  +G  N GKSSL NA+   +  IV+++ GTTRD
Sbjct: 152 AELLDALHSLLPDEPV-KLEYSGIKVSFVGRPNVGKSSLINAILGSERVIVSEVAGTTRD 210

Query: 257 VLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            + +  + +G    + DTAGIR   + +  VE   + R+   +E +D++ L+ +I+    
Sbjct: 211 AVEVPFEYKGKEFVLIDTAGIRRRPKVEYGVEFFAVGRSIKAIEMSDVVCLVLDISEGIT 270

Query: 312 ------KEISFPKNIDFIFIGTKSDLYSTYTEE---------------YDHLISSFTGEG 350
                   +   +    + +  K DL     E+                    S+   EG
Sbjct: 271 NQDKKIAGLIERRFKGCVIVANKFDLVKATKEQAQDYIRKELHFLDFAPIVFTSAIRQEG 330

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           ++++++    +  +  K+   S  +         + 
Sbjct: 331 IQDILDNAILVYQDYTKQHKTSFINRAVQKVLKEKA 366



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 17/169 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +++I+G  N GKS+LFN +  +  +IV  IPG TRD++  +   +     ++DT GI E 
Sbjct: 4   QVLIVGRPNVGKSTLFNRIVGRRKSIVHGIPGVTRDIIESEASWKDKKFMVADTGGIFEG 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLY 332
            + + ++  K+    +  A +IL + +    I +  E    + +P       +  K D  
Sbjct: 64  GEEMSEKVEKQVKKALSEAQVILFVVDGREGITAGDEYIARMLYPYREKVFLVVNKIDSE 123

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 YD           +S+  G G+ EL++ + S+L ++  KL +S
Sbjct: 124 KLQKNVYDFYALGFEKVFPVSAQHGIGVAELLDALHSLLPDEPVKLEYS 172


>gi|326575993|gb|EGE25916.1| GTP-binding protein EngA [Moraxella catarrhalis CO72]
          Length = 472

 Score =  119 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 102/249 (40%), Gaps = 17/249 (6%)

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
            ++ A LI +++E+   L      G+   L    +D +          L F E       
Sbjct: 94  VDARAGLIGADSEIAHFL---HTLGKPVFLVANKMDGVHEAAYAEFFALGFGEPYATAAS 150

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             + V N +  L  D+          E+     K+ I+G  N GKS+L N L  +D  +V
Sbjct: 151 HGRGVTNLLESLTADMP---EDMPKDELDSKTLKLAIIGRPNVGKSTLVNRLLGEDRVVV 207

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILL 304
            D+PGTTRD + I  + EG    + DTAG+R     D+ VEK  + +T   +++A+++++
Sbjct: 208 FDMPGTTRDSIYIPFEREGRSYVLIDTAGVRRRGRIDEKVEKFSVVKTLQAIKDANVVMV 267

Query: 305 LKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +       +++     +       +    K D  S   +++  +        +  +  
Sbjct: 268 VIDAKEGIVDQDLHMLGYALDAGRAIVVAINKWDGLSQDQKDFVKIEIDRRFNFVPWVKI 327

Query: 357 KIKSILSNK 365
            + S L   
Sbjct: 328 HLISALYGN 336



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L K   A+V D+ G TRD    D   E     + DT GI E D
Sbjct: 7   VALIGRPNVGKSTLFNQLTKSRQALVADLAGLTRDRQYGDAHFENKSFIVVDTGGIGEMD 66

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSD 330
           D    ++     +++  +  AD+++ + +     I +  EI+            +  K D
Sbjct: 67  DGSGNIDDYMATQSYTAIHEADIVVFVVDARAGLIGADSEIAHFLHTLGKPVFLVANKMD 126

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            ++     E+        +  ++  G G+  L+  + + +     K    
Sbjct: 127 GVHEAAYAEFFALGFGEPYATAASHGRGVTNLLESLTADMPEDMPKDELD 176


>gi|237807666|ref|YP_002892106.1| small GTP-binding protein [Tolumonas auensis DSM 9187]
 gi|259645887|sp|C4LC41|DER_TOLAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|237499927|gb|ACQ92520.1| small GTP-binding protein [Tolumonas auensis DSM 9187]
          Length = 498

 Score =  119 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K  I+G  N GKS+L N +  +D  IV D+PGTTRD + I L+ +     + DTAG+R+
Sbjct: 212 IKFAIIGRPNVGKSTLTNRMLGEDRVIVYDLPGTTRDSIYIPLERDDQHYIVIDTAGVRK 271

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              I    EK  + +T   +E+A+++LLL +     S +++S            +    K
Sbjct: 272 KKKIYETVEKFSVVKTLQAIEDANVVLLLIDAREGVSDQDLSLLGFTLHSGRSIVIAVNK 331

Query: 329 SDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D     T+E                  H IS+  G G+  L + I+    +  K++  S
Sbjct: 332 WDGLDQDTKEKIKEDLERRLGFVDFARVHFISALHGSGVGNLFDSIQEAYRSATKRISTS 391

Query: 373 IPSH 376
           + + 
Sbjct: 392 MLTR 395



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 19/154 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       ++     + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAVVDDMNFIVVDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTK----- 328
           + +E +  +++   ++ +D++L + +  +     +I               +  K     
Sbjct: 65  EGIEVKMAEQSLQAIDESDVVLFMVDARAGVTSADIGIANHLRRQKKKVFLVANKTDGLD 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINK 357
                +D YS    E  + I++  G G+  L+ K
Sbjct: 125 GDVHCADFYSLALGEV-YQIAASHGRGVTSLLEK 157


>gi|153953981|ref|YP_001394746.1| GTP-binding protein EngA [Clostridium kluyveri DSM 555]
 gi|219854595|ref|YP_002471717.1| hypothetical protein CKR_1252 [Clostridium kluyveri NBRC 12016]
 gi|189037142|sp|A5N7W7|DER_CLOK5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783148|sp|B9E1C8|DER_CLOK1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|146346862|gb|EDK33398.1| Hypothetical protein CKL_1356 [Clostridium kluyveri DSM 555]
 gi|219568319|dbj|BAH06303.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 438

 Score =  119 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 84/216 (38%), Gaps = 11/216 (5%)

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
                +  M  +        ++K+ +++        ++         S      +  + +
Sbjct: 99  AADKEVAQMLRKSKKPIVLVVNKIDNMKQENYIYEFYNLGIGEPISISASQGLGLGDMLD 158

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +  +       +      KI  +G  N GKSSL N L  ++  IV+DIPGTTRD +   
Sbjct: 159 KLVENFKNEGNEDEDSEYIKIAFIGKPNVGKSSLINKLLGEERVIVSDIPGTTRDAIDSY 218

Query: 262 LDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
           L+ +     + DTAG+R      + +EK  + RT+  VE AD+ +L+ +          K
Sbjct: 219 LETDEGKFLLIDTAGVRRKSKVKEEIEKYSVIRTYTAVERADVCILMLDATHDISEQDEK 278

Query: 319 --------NIDFIFIGTKSDLYSTYTEEYDHLISSF 346
                   N   + +  K DL    T+  +   +S 
Sbjct: 279 IIGYAHELNKAIMVVINKWDLVDKDTKTVNKYKTSI 314



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K ++IV D PG TRD +    +   Y   I DT GI  E 
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRISIVEDTPGVTRDRVYAQAEWLNYNFTIIDTGGIEPEN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +D++  +  ++  + +E A++I+ + +             ++        + +  K D  
Sbjct: 66  NDVIISKMRRQAQVAIETANVIIFIVDGREGLTAADKEVAQMLRKSKKPIVLVVNKIDNM 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 Y+            S+  G GL ++++K+     N+  +   S
Sbjct: 126 KQENYIYEFYNLGIGEPISISASQGLGLGDMLDKLVENFKNEGNEDEDS 174


>gi|308069529|ref|YP_003871134.1| GTP-binding protein engA [Paenibacillus polymyxa E681]
 gi|305858808|gb|ADM70596.1| GTP-binding protein engA [Paenibacillus polymyxa E681]
          Length = 440

 Score =  119 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 15/150 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I+S++ + +      +  ++ ++G  N GKSSL NA+  ++  IV+DI GTTRD 
Sbjct: 155 DLLDAITSNLPELEEDHYDEDVIRVALIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    + +G    + DTAG+R+   +    EK  + R    +E AD++L++  IN ++ I
Sbjct: 215 IDTPFEKDGQKYVLIDTAGMRKRGKVYETTEKYSVMRAMRAIERADVVLVV--INGEEGI 272

Query: 315 ----------SFPKNIDFIFIGTKSDLYST 334
                     ++      +F+  K D+   
Sbjct: 273 IEQDKHIAGYAYEAGKASLFVVNKWDVVDK 302



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 18/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS++FN +    ++IV D PG TRD +    +  G    I DT GI  + 
Sbjct: 6   VAIVGRPNVGKSTIFNRIIGDRLSIVEDKPGITRDRIYGISEWNGKSFSIIDTGGIEIDG 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +D++ K    +  L +E AD+I+ + +  +          ++ +      I    K D  
Sbjct: 66  EDVILKSIRMQAELAIEEADVIVFMSDAKAGITQSDEEVAQMLYRSGKPIIVAVNKVDNL 125

Query: 333 STYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKK 368
           S     Y+     F          G G+ +L++ I S L    + 
Sbjct: 126 SRADLIYEFYSYGFGDPIAVSGSHGTGIGDLLDAITSNLPELEED 170


>gi|28373695|pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
           Switch Protein Containing Two Gtpase Domains
          Length = 439

 Score =  119 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 96/239 (40%), Gaps = 23/239 (9%)

Query: 121 GKIDLL-EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           GK  +  E ESLAD +   T     ++         +      +    ++  + + L F 
Sbjct: 91  GKRGITKEDESLADFLRKSTVDTILVA---------NKAENLREFEREVKPELYS-LGFG 140

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   V    +  +   +  +   +       +    I +  K+ I+G  N GKS+LFNA+
Sbjct: 141 EPIPVSAEHNINLDTXLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAI 200

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV----EKEGIKRTFLE 295
             K+ A+V+ IPGTTRD +  ++ ++G      DTAG+R    +     EK    R    
Sbjct: 201 LNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260

Query: 296 VENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           +E AD+++++ +              +   +    + +  K DL     + YD     F
Sbjct: 261 IEKADVVVIVLDATQGITRQDQRXAGLXERRGRASVVVFNKWDLVVHREKRYDEFTKLF 319



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 20/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++I+G  N GKS+LFN L KK  AIV D  G TRD +   ++  G   K+ DT G+ +  
Sbjct: 4   VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
            DI+ ++  + T   +  ADL+L + +          S  +      +D I +  K++  
Sbjct: 64  QDIISQKXKEVTLNXIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123

Query: 333 STYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +  E               +S+     L+  +  I   L  K   L  
Sbjct: 124 REFEREVKPELYSLGFGEPIPVSAEHNINLDTXLETIIKKLEEKGLDLES 173


>gi|310642585|ref|YP_003947343.1| gtp-binding protein enga [Paenibacillus polymyxa SC2]
 gi|309247535|gb|ADO57102.1| GTP-binding protein engA [Paenibacillus polymyxa SC2]
          Length = 440

 Score =  119 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 15/150 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I+S++ + +      +  ++ ++G  N GKSSL NA+  ++  IV+DI GTTRD 
Sbjct: 155 DLLDAITSNLPELEEDHYDEDVIRVALIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    + +G    + DTAG+R+   +    EK  + R    +E AD++L++  IN ++ I
Sbjct: 215 IDTPFEKDGQKYVLIDTAGMRKRGKVYETTEKYSVMRAMRAIERADVVLVV--INGEEGI 272

Query: 315 ----------SFPKNIDFIFIGTKSDLYST 334
                     ++      +F+  K D+   
Sbjct: 273 IEQDKHIAGYAYEAGKASLFVVNKWDVVDK 302



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 18/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS++FN +    ++IV D PG TRD +    +  G    I DT GI  + 
Sbjct: 6   VAIVGRPNVGKSTIFNRIIGDRLSIVEDKPGITRDRIYGISEWNGKSFSIIDTGGIEIDG 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +D++ K    +  L +E AD+I+ + +  +          ++ +      I    K D  
Sbjct: 66  EDVILKSIRMQAELAIEEADVIVFMSDAKAGITQADEEVAQMLYRSGKPIIVAVNKVDNL 125

Query: 333 STYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKK 368
           S     Y+     F          G G+ +L++ I S L    + 
Sbjct: 126 SRADLIYEFYSYGFGDPIAVSGSHGTGIGDLLDAITSNLPELEED 170


>gi|109899427|ref|YP_662682.1| GTP-binding protein EngA [Pseudoalteromonas atlantica T6c]
 gi|123170868|sp|Q15R60|DER_PSEA6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|109701708|gb|ABG41628.1| small GTP-binding protein [Pseudoalteromonas atlantica T6c]
          Length = 482

 Score =  119 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 109/271 (40%), Gaps = 40/271 (14%)

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           D I  ++E     ++    G+++ +       +T + +     L  SE+         E 
Sbjct: 121 DGIDGDSESADFFALG--LGDVNQIAAAHGRGVTQLLTHTLMPL--SEQFPDMQVPEDEE 176

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
            ++ +  +  +   ++            K+ I+G  N GKS+L N +  ++  +V D PG
Sbjct: 177 ADEEIDAEKQLEKLLAS---------PIKLAIVGKPNVGKSTLTNRILGEERVVVYDQPG 227

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN 309
           TTRD + I ++ +     + DTAG+R      + VEK  I +T   +E A+++LL+ +  
Sbjct: 228 TTRDSIFIPMERDDREYVLIDTAGVRRRRSISEAVEKFSIVKTLQAIEEANVVLLVIDAQ 287

Query: 310 ---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISS 345
              + +++S            +    K      D+      E D           H IS+
Sbjct: 288 EGVTDQDLSLLGFVLNSGRSLVVAVNKWDGLAKDVKDEIKRELDRRLGFIDFARLHYISA 347

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             G  +  L   ++   ++  K++  S+ + 
Sbjct: 348 LHGTNVGHLFESVQEAYNSATKRINTSMLTR 378



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      + EG    + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYEGLQFIVVDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             ++     ++ + ++ AD++L L +  +          E    +N     +  K D   
Sbjct: 65  QGIDMAMANQSLMAIDEADVVLFLVDARAGLTAADQGIAEHLRKQNKSVYVVANKVDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINK 357
             +E  D           I++  G G+ +L+  
Sbjct: 125 GDSESADFFALGLGDVNQIAAAHGRGVTQLLTH 157


>gi|257063685|ref|YP_003143357.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Slackia heliotrinireducens DSM 20476]
 gi|256791338|gb|ACV22008.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Slackia heliotrinireducens DSM 20476]
          Length = 438

 Score =  119 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 30/210 (14%)

Query: 198 FLKNDISSHISQ--GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L +++ + + +   +  E    G  + I+G  NAGKSSL N L  +D +IV+D+ GTTR
Sbjct: 155 DLLDEVVAILRELPEREDEPAEEGINVAIIGRPNAGKSSLTNRLIGRDRSIVSDVAGTTR 214

Query: 256 DVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN--- 309
           D +   ++ +G +  I DTAG+R     D+ VE     R    ++ AD+ +L+ +     
Sbjct: 215 DAIDTRVEHDGKVYTIVDTAGLRRKSQIDEDVEYYSYVRAMRAIDRADVAILVMDATLGL 274

Query: 310 SKKEISFP-----KNIDFIFIGTKSDLYST-----------------YTEEYDHLISSFT 347
           + ++         +    I +  K D+  +                         IS+ T
Sbjct: 275 TDQDQRVAGYANERGCALIILLNKRDVVESGDVLDGLREDVGDRMTFVNYAPVISISALT 334

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           G+G+  + + I  + +N  + +  S  ++ 
Sbjct: 335 GKGVLRIWDAIDEVYANYSQTVSTSKLNNW 364



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+  N +A  D AIV ++ G TRD    + D  G    + DT GI   D
Sbjct: 6   VAVVGRPNVGKSTFVNRIAHADDAIVHEMRGVTRDRSYHNADWRGVHFTLIDTGGIEMGD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKE------INSKKEISFPKNID--FIFIGTKSDLY 332
           D   +  I+ + F+  + AD+IL + +       + ++     + +D     +  K D  
Sbjct: 66  DDAFQSSIRDQAFMAADEADVILFMVDGKTGITADDEEVARVLRKVDTPVFLLVNKMDNP 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           S   E ++           ISS  G G  +L++++ +IL    ++   
Sbjct: 126 SKMEENWEFYSLGLGDPRSISSTHGHGTGDLLDEVVAILRELPEREDE 173


>gi|326797802|ref|YP_004315621.1| GTP-binding protein engA [Sphingobacterium sp. 21]
 gi|326548566|gb|ADZ76951.1| GTP-binding protein engA [Sphingobacterium sp. 21]
          Length = 433

 Score =  119 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 13/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H  + +  E   +  K  I+G  N GKSS  NAL  K+  IVT I GTTRD 
Sbjct: 154 ELLDEVVKHFDEVQEEEG--SLPKYAIVGRPNVGKSSFINALIGKERNIVTPIAGTTRDS 211

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKE- 313
           + I  +  G+   + DTAG+R    +   +E   + RT   +E AD+++L+ +     E 
Sbjct: 212 IQIHYNQFGHEFMLIDTAGLRRKTKVKENIEFYSVMRTIKALEEADVVILMIDATEGLES 271

Query: 314 -------ISFPKNIDFIFIGTKSDLYST 334
                  ++       + +  K DL   
Sbjct: 272 QDVNIFHLAEKNKKGVVLLVNKWDLVDK 299



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 19/171 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           I I+G  N GKS+L+N L +   AIV D+ G TRD      +  G    + DT G +  +
Sbjct: 5   IAIVGRPNVGKSTLYNRLTESRKAIVDDMSGVTRDRHYGQAEWVGKTFTVIDTGGYVHGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           +DI E    ++  + +E A +IL + ++        +    +    N     +  K D +
Sbjct: 65  EDIFEAAIREQVLIAIEEASVILFMVDVTVGITDLDDDIAHLLRRSNKPVFVVVNKVDHH 124

Query: 333 STYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +T+            + ISS TG G  EL++++     ++ ++   S+P
Sbjct: 125 QLHTDASTFYALGLGEIYNISSMTGSGTGELLDEVVKHF-DEVQEEEGSLP 174


>gi|227879096|ref|ZP_03996985.1| GTP-binding protein EngA [Lactobacillus crispatus JV-V01]
 gi|256843085|ref|ZP_05548573.1| ribosome-associated GTPase EngA [Lactobacillus crispatus 125-2-CHN]
 gi|256850263|ref|ZP_05555692.1| phosphoglycerate dehydrogenase [Lactobacillus crispatus MV-1A-US]
 gi|262046345|ref|ZP_06019307.1| ribosome-associated GTPase EngA [Lactobacillus crispatus MV-3A-US]
 gi|293379768|ref|ZP_06625900.1| ribosome-associated GTPase EngA [Lactobacillus crispatus 214-1]
 gi|312977269|ref|ZP_07789017.1| ribosome-associated GTPase EngA [Lactobacillus crispatus CTV-05]
 gi|227861337|gb|EEJ68967.1| GTP-binding protein EngA [Lactobacillus crispatus JV-V01]
 gi|256614505|gb|EEU19706.1| ribosome-associated GTPase EngA [Lactobacillus crispatus 125-2-CHN]
 gi|256712900|gb|EEU27892.1| phosphoglycerate dehydrogenase [Lactobacillus crispatus MV-1A-US]
 gi|260573216|gb|EEX29774.1| ribosome-associated GTPase EngA [Lactobacillus crispatus MV-3A-US]
 gi|290923677|gb|EFE00548.1| ribosome-associated GTPase EngA [Lactobacillus crispatus 214-1]
 gi|310895700|gb|EFQ44766.1| ribosome-associated GTPase EngA [Lactobacillus crispatus CTV-05]
          Length = 435

 Score =  119 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 113/293 (38%), Gaps = 49/293 (16%)

Query: 131 LADLISSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIR-------SFIEADLDFSEEE 182
           + + I ++ E+    + +  M   + +      +++ H+               D  E+ 
Sbjct: 68  IEEEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIAHLLYRTKKPVILAVNKADNPEQR 127

Query: 183 DVQNFSSKEVLNDIL-----------FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
                     L D +            L + I +     K  E   +     ++G  N G
Sbjct: 128 SDIYDFYSLGLGDPIPVSSSHGTGIGDLLDQIVNDFPDDKDTEAD-DVISFSVIGRPNVG 186

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEG 288
           KSS+ N L  +D  IV +  GTTRD +      +G   K+ DTAGIR    +    EK  
Sbjct: 187 KSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTHDGVKFKVVDTAGIRRRGKVYEKTEKYS 246

Query: 289 IKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY---STYTE 337
           + R    +E +D++LL+ + ++            +       I +  K DL    ST  +
Sbjct: 247 VMRAMSAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLPKKNSTSAK 306

Query: 338 EYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           E++                 +S+ TG+ L+++ N +K +  N+ +++  S+ +
Sbjct: 307 EFEREIRDEFQYLDYAPILFVSAKTGQRLDQIPNMVKEVYDNQNQRIQSSVLN 359



 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD      +  G+   + DT GI    
Sbjct: 6   VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
             +E+E   +  + +E AD+I++       + +++ +   + +      I    K+D   
Sbjct: 66  GKIEEEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIAHLLYRTKKPVILAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             ++ YD           +SS  G G+ +L+++I +   +        + 
Sbjct: 126 QRSDIYDFYSLGLGDPIPVSSSHGTGIGDLLDQIVNDFPDDKDTEADDVI 175


>gi|282895428|ref|ZP_06303565.1| GTP-binding protein engA [Raphidiopsis brookii D9]
 gi|281199461|gb|EFA74324.1| GTP-binding protein engA [Raphidiopsis brookii D9]
          Length = 453

 Score =  119 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 31/206 (15%)

Query: 201 NDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           + +   I      E ++     K+ I+G  N GKSSL NA   ++ AIV+ I GTTRD +
Sbjct: 156 DLLDELIKYTPQVEDLQENSEVKVAIVGRPNVGKSSLLNAFVGEERAIVSPISGTTRDTI 215

Query: 259 TIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI-----NS 310
              ++ EG   ++ DTAGIR+    +   E   I R F  +  AD++LL+ +        
Sbjct: 216 DTLIEREGQAYRLIDTAGIRKKKHVEYGTEFFSINRAFKAIRRADVVLLVLDALDGVTEQ 275

Query: 311 KKEIS---FPKNIDFIFIGTKSDLYST-----------------YTEEYD-HLISSFTGE 349
            ++++          I +  K D                     +TE  D   +S+ TG+
Sbjct: 276 DQKLAGRIIEDGRACIIVVNKWDAVEKDSYTIYDHEKSLEARLHFTEWADTIFVSAVTGQ 335

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
            +E++++ +     +  +++  S+ +
Sbjct: 336 RVEKILDLVNKAAESHKRRVSTSVVN 361



 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N LA    AIV D PG TRD        +     + DT G+   D
Sbjct: 6   VAIIGRPNVGKSTFVNRLAGDQTAIVHDEPGVTRDRTYRPAFWQNREFLVVDTGGLVFND 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLY 332
           +        ++    +  A   + + +       + +EI+     + +  +    K +  
Sbjct: 66  NTEFLPLIRQQAITALSEACAAIFVVDGQAGLTPADEEIAEWLRQQTVPTLLAVNKCESP 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKI 358
                +               S+  G G  +L++++
Sbjct: 126 DQGVIQASEFWELGLGEPYPISAIHGSGTGDLLDEL 161


>gi|295692881|ref|YP_003601491.1| GTP-binding protein enga [Lactobacillus crispatus ST1]
 gi|295030987|emb|CBL50466.1| GTP-binding protein engA [Lactobacillus crispatus ST1]
          Length = 435

 Score =  119 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 113/293 (38%), Gaps = 49/293 (16%)

Query: 131 LADLISSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIR-------SFIEADLDFSEEE 182
           + + I ++ E+    + +  M   + +      +++ H+               D  E+ 
Sbjct: 68  IEEEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIAHLLYRTKKPVILAVNKADNPEQR 127

Query: 183 DVQNFSSKEVLNDIL-----------FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
                     L D +            L + I +     K  E   +     ++G  N G
Sbjct: 128 SDIYDFYSLGLGDPIPVSSSHGTGIGDLLDQIVNDFPDDKDTEAD-DVISFSVIGRPNVG 186

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEG 288
           KSS+ N L  +D  IV +  GTTRD +      +G   K+ DTAGIR    +    EK  
Sbjct: 187 KSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTHDGVKFKVVDTAGIRRRGKVYEKTEKYS 246

Query: 289 IKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY---STYTE 337
           + R    +E +D++LL+ + ++            +       I +  K DL    ST  +
Sbjct: 247 VMRAMSAIERSDVVLLVIDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLPKKNSTSAK 306

Query: 338 EYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           E++                 +S+ TG+ L+++ N +K +  N+ +++  S+ +
Sbjct: 307 EFEREIRDEFQYLDYAPILFVSAKTGQRLDQIPNMVKEVYDNQNQRIQSSVLN 359



 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD      +  G+   + DT GI    
Sbjct: 6   VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
             +E+E   +  + +E AD+I++       + +++ +   + +      I    K+D   
Sbjct: 66  GKIEEEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIAHLLYRTKKPVILAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             ++ YD           +SS  G G+ +L+++I +   +        + 
Sbjct: 126 QRSDIYDFYSLGLGDPIPVSSSHGTGIGDLLDQIVNDFPDDKDTEADDVI 175


>gi|227543422|ref|ZP_03973471.1| GTP-binding protein EngA [Lactobacillus reuteri CF48-3A]
 gi|300910088|ref|ZP_07127548.1| ribosome-associated GTPase EngA [Lactobacillus reuteri SD2112]
 gi|227186601|gb|EEI66672.1| GTP-binding protein EngA [Lactobacillus reuteri CF48-3A]
 gi|300892736|gb|EFK86096.1| ribosome-associated GTPase EngA [Lactobacillus reuteri SD2112]
          Length = 440

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 18/179 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E + N   + ++G  N GKS+LFN +A + ++IV D PG TRD +    +  G    + D
Sbjct: 2   ERLANPI-VAVVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKHFSMID 60

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           T GI  +D  +  +  ++  + ++ AD+I+ + ++ +           I +  N   +  
Sbjct: 61  TGGIEISDQPLLTQIRQQAEVAIDEADVIIFVADVENGVTDADEQVARILYRSNKPVVLA 120

Query: 326 GTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
             K D     ++ YD+          +SS  G G+ +L++ +     +           
Sbjct: 121 VNKVDNPERRSDIYDYYSLGLGEPYAVSSVHGIGMGDLLDAVIKEFPDNAANDEDDSIH 179



 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 89/210 (42%), Gaps = 37/210 (17%)

Query: 201 NDISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           + + + I +          +      +G  N GKSSL NA+  ++  IV+++ GTTRD +
Sbjct: 157 DLLDAVIKEFPDNAANDEDDSIHFSFIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAI 216

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
               +  +G    + DTAGIR+   I    E+  + R+   ++++D++L++  +N+++ I
Sbjct: 217 NTQFETADGQKFTMVDTAGIRKKGKIYENTERYSLMRSMRAIDDSDVVLVV--LNAEEGI 274

Query: 315 ----------SFPKNIDFIFIGTKSDLYST------------YTEEY-------DHLISS 345
                     +       I +  K D                  +E+          +S+
Sbjct: 275 RELDKHIAGYAHEAGCGVIIVVNKWDTLKEKDHRTMTDFTNLIRQEFQYLSYAPIIFVSA 334

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   I+ +  +  +++  ++ +
Sbjct: 335 KTKQRLNQLPGLIEEVYQHHRQRIQSAVLN 364


>gi|288930105|ref|ZP_06423943.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288328578|gb|EFC67171.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 437

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L K   AIV+D  GTTRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTKTRSAIVSDTAGTTRDRQYGKCDWAGREFSVVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E    ++  +  E ADL+L L ++N+          +I     +  + +  K+D  
Sbjct: 65  DDIFEDAIRRQVLVATEEADLVLFLVDVNTGVTDLDEDVAQILRRTKVPVVLVVNKADNN 124

Query: 333 STYTEEY---------DHLISSFTGEGLEELINK-IKSILSNKFKKLPFSIP 374
               E              IS+ TG G  +L++  I  +   + + +   IP
Sbjct: 125 EQIYEAPAFYSLGLGDPFPISAATGSGTGDLLDAVIAQLKPGENENVEDGIP 176



 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 14/170 (8%)

Query: 201 NDISSHISQGKLGEI--IRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           + + + I+Q K GE   + +G  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DLLDAVIAQLKPGENENVEDGIPRFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    D  G+   + DTAGIR  + +    E   + R+   +E++D+ +L+ +     E 
Sbjct: 214 IYTRFDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRAIEHSDVCILMIDATRGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  +        + +  K DL     ++      +   E +   ++
Sbjct: 274 QDMNIFQLIQKNQKSLVVVVNKWDLVPDKDQKVIKTFENAIRERMAPFVD 323


>gi|261493816|ref|ZP_05990330.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261310519|gb|EEY11708.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 511

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+
Sbjct: 223 IKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRK 282

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              +    EK  + +T   +++A+++LL  +     S +++S            + +  K
Sbjct: 283 RGKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNK 342

Query: 329 S-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 D+      E D           H IS+  G G+  L + +K   +   +K   S
Sbjct: 343 WDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTS 402

Query: 373 IPSH 376
           + + 
Sbjct: 403 MLTR 406



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 84/200 (42%), Gaps = 24/200 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + VE++  +++ L +E AD++L L +  +          +    +    + +  K+D   
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGIAQYLRQREKTTVVVANKTDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             +   +            ++  G G+ +LI ++ + L  +     F       +     
Sbjct: 125 ADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLAPLGEQLNAEQF-------NQEQAG 177

Query: 385 QTVRYLEMASLNEKDCGLDI 404
           +  + +     +E D   D 
Sbjct: 178 ENAKNVANEETDEWDTEFDF 197


>gi|91229122|ref|ZP_01262895.1| tRNA modification GTPase [Vibrio alginolyticus 12G01]
 gi|91187434|gb|EAS73777.1| tRNA modification GTPase [Vibrio alginolyticus 12G01]
          Length = 153

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 14/148 (9%)

Query: 306 KEINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLEE 353
            +    K+I        P NI    I  K+D                  +S+ TG G+E 
Sbjct: 7   TDATDPKDIWPDFVDRLPDNIGITVIRNKADQTGEDMGICHVNNPTLIRLSAKTGAGVEA 66

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLA 412
           L + +K  +            + +RHL  L +  ++L++     E     +I+AE LR+ 
Sbjct: 67  LRDHLKECM-GFSGNSEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGEILAEELRIT 125

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              L +ITG    + LL  IFS FCIGK
Sbjct: 126 QQHLNEITGEFSSDDLLGRIFSSFCIGK 153


>gi|251788752|ref|YP_003003473.1| GTP-binding protein EngA [Dickeya zeae Ech1591]
 gi|247537373|gb|ACT05994.1| small GTP-binding protein [Dickeya zeae Ech1591]
          Length = 497

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 210 IKLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDGRDYVLIDTAGVRK 269

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 270 RGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 329

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   +        +++  +
Sbjct: 330 WDGLSQEVKEQVKETLDLRLGFIDFARIHFISALHGSGVGNLFESVTEAYDCSTRRVGTA 389

Query: 373 IPSH 376
           + + 
Sbjct: 390 MLTR 393



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L L +             +    +  D   +  K D   
Sbjct: 65  DGVETRMAEQSLLAIEEADIVLFLVDARDGLMPADHAIAQHLRTREKDTFLVANKIDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
             T   D           I++  G G+  L+ K+
Sbjct: 125 IDTGTADFYSLGLGEVYPIAASHGRGVTALLEKV 158


>gi|302871345|ref|YP_003839981.1| ribosome-associated GTPase EngA [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574204|gb|ADL41995.1| ribosome-associated GTPase EngA [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 440

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 11/192 (5%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
           ++K+ +I         +          S E    +  + + + +++    + EI  N  K
Sbjct: 118 VNKIDNISQEPMIYEFYELGLSDPIAMSAEHGTGVGDVLDAVVNYLDNVGINEIEENTIK 177

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +  ++  IV+DIPGTTRD +    + EG  + + DTAG+R   
Sbjct: 178 VAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTFEFEGIPITLIDTAGLRRKS 237

Query: 282 DIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            I    E+  + RT   +E +D+ ++L +               ++      I    K D
Sbjct: 238 KIYDNVERYSMLRTLQAIERSDICIILLDGTEGVSEQDAKVAGYAYEAGKGCIVAVNKWD 297

Query: 331 LYSTYTEEYDHL 342
                 +  D  
Sbjct: 298 AVEKDEKTADEY 309



 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  +  AIV D PG TRD +  + +  G    + DT GI   +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGEAEWRGITFNVIDTGGIEPYS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           +DI+ K+  ++    ++ +D+I+ + +      ++ KE++          +    K D  
Sbjct: 65  EDIILKQMRRQAQFAIDMSDVIIFIVDGKTGLTDADKEVANMLRTSKKPIVLAVNKIDNI 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
           S     Y+           +S+  G G+ ++++ + + L N
Sbjct: 125 SQEPMIYEFYELGLSDPIAMSAEHGTGVGDVLDAVVNYLDN 165


>gi|260890872|ref|ZP_05902135.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254]
 gi|260859425|gb|EEX73925.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254]
          Length = 162

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 8/142 (5%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L NAL  ++ AIVT I GTTRDV+   ++++G  + + DTAGIR+TDDIV
Sbjct: 1   MGKPNVGKSTLLNALLHEERAIVTHIAGTTRDVIEEIINIKGIPLVLVDTAGIRKTDDIV 60

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK---KEISF-----PKNIDFIFIGTKSDLYSTYT 336
           E  G++++   +E ADL+LL+ + + +   ++I             I +  K DL     
Sbjct: 61  ENIGVEKSKQFIEKADLVLLVLDASKELENEDIEVINQIKENKKKVIVLLNKIDLNKKLI 120

Query: 337 EEYDHLISSFTGEGLEELINKI 358
            +               L  KI
Sbjct: 121 LKGITWKILLKFLQKTILELKI 142


>gi|253988871|ref|YP_003040227.1| GTP-binding protein EngA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780321|emb|CAQ83482.1| gtp-binding protein enga (double era-like domain protein)
           [Photorhabdus asymbiotica]
          Length = 499

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 213 LKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 272

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A+++LL+ +     S +++S            +    K
Sbjct: 273 RGKVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIAVNK 332

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L + I        +++  S
Sbjct: 333 WDGMSQEDKEQVKEMLDYRLGFVDFARVHFISALHGSGVGNLFDSILEAYDCATRRVSTS 392

Query: 373 IPSH 376
           + + 
Sbjct: 393 LLTR 396



 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 10  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGIDGTE 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNID-----FIFIGTKSDLYS 333
           D VE     ++ + +E AD++L + +  +     + +  K++         +  K+D   
Sbjct: 70  DGVETHMAAQSLMAIEEADIVLFMVDARAGLMPADHAIAKHLRSREKATFLVANKTDGID 129

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
             T   +           I++  G G+ +LI ++
Sbjct: 130 IDTSIAEFYSLGLGDIYSIAASHGRGVTQLIERV 163


>gi|58337266|ref|YP_193851.1| GTP-binding protein EngA [Lactobacillus acidophilus NCFM]
 gi|81311473|sp|Q5FKF4|DER_LACAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|58254583|gb|AAV42820.1| phosphoglycerate dehydrogenase [Lactobacillus acidophilus NCFM]
          Length = 435

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 112/293 (38%), Gaps = 49/293 (16%)

Query: 131 LADLISSETEMQRRLS--------MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           + D I ++ E+    +        +     +L     + + +            D  E+ 
Sbjct: 68  IEDEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIARLLYRTKKPVILAVNKADNPEQR 127

Query: 183 DVQNFSSKEVLNDIL-----------FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           +         L D +            L ++I +     K  E   +     ++G  N G
Sbjct: 128 NDIYDFYSLGLGDPIPVSSSHGTGIGDLLDEIVNDFPAEKDSEAD-DVISFSMIGRPNVG 186

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEG 288
           KSSL N L  +D  IV +  GTTRD +      +G   K+ DTAGIR    +    EK  
Sbjct: 187 KSSLVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGIKFKVVDTAGIRRRGKVYEKTEKYS 246

Query: 289 IKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY---STYTE 337
           + R    +E +D++LL+ + ++            +       I +  K DL    ST  +
Sbjct: 247 VLRAMSAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLPEKNSTSAK 306

Query: 338 EYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           E++                 +S+ TG+ ++++ + +K +  N+ +++  S+ +
Sbjct: 307 EFEREIRSEFQYLDYAPILFVSAKTGQRIDQIPSMVKEVYDNQNQRIQSSVLN 359



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD      +  G+   + DT GI    
Sbjct: 6   VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
             +E E   +  + +E AD+I++       + +++ +   + +      I    K+D   
Sbjct: 66  GKIEDEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIARLLYRTKKPVILAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G+ +L+++I +    +       + 
Sbjct: 126 QRNDIYDFYSLGLGDPIPVSSSHGTGIGDLLDEIVNDFPAEKDSEADDVI 175


>gi|257125220|ref|YP_003163334.1| GTP-binding protein EngA [Leptotrichia buccalis C-1013-b]
 gi|257049159|gb|ACV38343.1| small GTP-binding protein [Leptotrichia buccalis C-1013-b]
          Length = 441

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 13/157 (8%)

Query: 194 NDILFLKNDISSHISQGKLGEI--IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
                L + + + I + +  +I  I +G  I ILG  NAGKSSL N L  ++ +IV+DI 
Sbjct: 148 EHKTNLGDLLDAVIEKFEDKKIKQIEDGLNIAILGRPNAGKSSLVNKLLNEERSIVSDIA 207

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI 308
           GTTRD +   L   G    + DTAGIR     +D +E   I R    ++ AD+ +L+ + 
Sbjct: 208 GTTRDSIDSSLRYNGETYTLIDTAGIRRKSKVEDDIEYYSILRAMKAIKRADVCVLMLDA 267

Query: 309 -----NSKKEIS---FPKNIDFIFIGTKSDLYSTYTE 337
                +  K I+   + +    I    K DL      
Sbjct: 268 TELLTDQDKRIAGMIYEERKPIIIAVNKWDLIEKNNN 304



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    ++IV D PG TRD L  +++  G    + DT G+   T
Sbjct: 5   VAIVGRPNVGKSTLFNKLVGDRLSIVKDEPGVTRDRLYREIEWSGKEFILVDTGGLEPRT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +D +  +  ++  + ++ AD+I+ L +  +           +   ++   +    K D  
Sbjct: 65  EDFMMGKIKQQAQVAIDEADVIIFLVDGKAGITGLDEDVATVLRRQDKKVVVAVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             Y  + +++   F G G EE+I
Sbjct: 123 -NYLRDQENIF-EFYGLGFEEVI 143


>gi|254506757|ref|ZP_05118897.1| GTP-binding protein EngA [Vibrio parahaemolyticus 16]
 gi|219550338|gb|EED27323.1| GTP-binding protein EngA [Vibrio parahaemolyticus 16]
          Length = 494

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 34/257 (13%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           M  ++          I+   +  +    D    E ED+  F  +E   D        S  
Sbjct: 140 MYQIAAAHGRGVTALIELALNPFAEKLLDESKGELEDLTEFEDEEEKLDY-------SEE 192

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ +   +     K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G
Sbjct: 193 EAEEEFTRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDG 252

Query: 267 YLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP--- 317
               + DTAG+R    I    EK  + +T   VE+A+++LL+ +     S +++S     
Sbjct: 253 REYVLIDTAGVRRRTRINETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFA 312

Query: 318 --KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIK 359
                  +    K      D+     +E D           H IS+  G G+  L   ++
Sbjct: 313 LNAGRSIVIAVNKWDGLDMDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQ 372

Query: 360 SILSNKFKKLPFSIPSH 376
               +   ++  S+ + 
Sbjct: 373 EAYKSATTRVGTSVLTR 389



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +     + +  K+        + +  K D   
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFMVDGRAGLTAADEAIAKHLRKLEKPSMLVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELIN 356
                 +            ++  G G+  LI 
Sbjct: 125 ADAASAEFWQLGVENMYQIAAAHGRGVTALIE 156


>gi|163782118|ref|ZP_02177117.1| GTP binding protein Era [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882650|gb|EDP76155.1| GTP binding protein Era [Hydrogenivirga sp. 128-5-R1-1]
          Length = 431

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 27/208 (12%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++   +  G + E+   G ++ + G  N GKSSL NAL K+D  IV+ + GTTRD 
Sbjct: 154 ELLDEVVKRLRYGSV-ELSYEGIRLTLAGRPNVGKSSLLNALLKEDRVIVSPVAGTTRDT 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI------ 308
           + +  +  G    + DTAG+R   ++    E   + R+   +E++D++ L+ +       
Sbjct: 213 VEVPFEWNGNKFVLVDTAGVRRPSNVEYGVEFFSVGRSLKAIESSDVVCLVLDAGEGVTR 272

Query: 309 -NSKKEISFPKNID-FIFIGTKSDLYSTYTEE-----------YDHLISSFT----GEGL 351
            + +      +     + +  K DL     EE            D+    FT    G G+
Sbjct: 273 QDKRLGGLIERKYKGCVVVANKMDLSPLSEEEVEELVRRELFFLDYAPIVFTVAPEGRGV 332

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRH 379
           E++++K   +  +  KK   S  +   H
Sbjct: 333 EDILDKAVLVYEDYTKKHKTSFVNKVVH 360



 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 18/169 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++VI+G  N GKSSLFN +  +  AIV DIPG TRD +    +  G    + DT G+   
Sbjct: 4   RVVIIGRPNVGKSSLFNRIVGRRKAIVEDIPGVTRDSVESKAEWGGKEFLLVDTGGLVPD 63

Query: 281 DDIVEKEGIKRT-FLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD- 330
                 EG+++T   EVE +D+IL +  +        +EI+   +P     I +  K D 
Sbjct: 64  SHDEILEGVRKTIEREVERSDVILFVVSVKDGVTPLDEEIARLLYPFGDKVILVVNKVDT 123

Query: 331 ------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPF 371
                 +   Y   + H+   SS  G G+ EL++++   L     +L +
Sbjct: 124 DRDEEVVSEFYQLGFRHVFPVSSVHGRGVGELLDEVVKRLRYGSVELSY 172


>gi|261495041|ref|ZP_05991508.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309283|gb|EEY10519.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 504

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+
Sbjct: 216 IKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRK 275

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              +    EK  + +T   +++A+++LL  +     S +++S            + +  K
Sbjct: 276 RGKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNK 335

Query: 329 S-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 D+      E D           H IS+  G G+  L + +K   +   +K   S
Sbjct: 336 WDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTS 395

Query: 373 IPSH 376
           + + 
Sbjct: 396 MLTR 399



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 82/197 (41%), Gaps = 24/197 (12%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T++ V
Sbjct: 1   MGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTEEGV 60

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           E++  +++ L +E AD++L L +  +          +    +    + +  K+D     +
Sbjct: 61  EEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGIAQYLRQREKTTVVVANKTDGIDADS 120

Query: 337 EEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
              +            ++  G G+ +LI ++ + L  +     F       +     +  
Sbjct: 121 HCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLAPLGEQLNAEQF-------NQEQAGENA 173

Query: 388 RYLEMASLNEKDCGLDI 404
           + +     +E D   D 
Sbjct: 174 KNVANEETDEWDTEFDF 190


>gi|307245234|ref|ZP_07527325.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307254181|ref|ZP_07536026.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258646|ref|ZP_07540381.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306853878|gb|EFM86092.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306862881|gb|EFM94830.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867303|gb|EFM99156.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 506

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    I DTAG+R+
Sbjct: 218 IKIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRK 277

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              +    EK  + +T   +++A+++LL  +     S +++S            + +  K
Sbjct: 278 RGKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNK 337

Query: 329 S-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 D+      E D           H IS+  G G+  L + +K   +   +K   S
Sbjct: 338 WDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTS 397

Query: 373 IPSH 376
           + + 
Sbjct: 398 MLTR 401



 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 17/163 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLYS 333
           + VE++  +++ L +E AD++L L +  +     +I        +    + +  K+D   
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANKTDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFK 367
             +   +            ++  G G+ +LI+++ + L  +  
Sbjct: 125 ADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIDQVLAPLGEQLN 167


>gi|288556077|ref|YP_003428012.1| GTP-binding protein Der [Bacillus pseudofirmus OF4]
 gi|288547237|gb|ADC51120.1| GTP-binding protein EngA [Bacillus pseudofirmus OF4]
          Length = 437

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 93/209 (44%), Gaps = 33/209 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H  +    +   +  +I ++G  N GKSSL NA+  ++  IV++IPGTTRD 
Sbjct: 154 DLLDEVLKHFPEKVEDDYDPDTIRISLIGRPNVGKSSLVNAMLGEERVIVSNIPGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +      +G    + DTAG+R+   +    EK  + R+   +E ++++L++  IN+++ I
Sbjct: 214 IDTSFTRDGQDYVLIDTAGMRKRGKVYESTEKYSVLRSLKAIERSNVVLVV--INAEEGI 271

Query: 315 ----------SFPKNIDFIFIGTKSDLYS-----------TYTEEY-------DHLISSF 346
                     +       I +  K D                 +E+           S+ 
Sbjct: 272 IEQDKKIAGYAHEAGRAVIIVVNKWDAIERDDKTMQKFEQKIRDEFLFLSYAPILFTSAK 331

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPS 375
           T + L+ ++  +K +  N   ++P ++ +
Sbjct: 332 TKQRLQHVLPMVKKVSQNHNLRVPTNVLN 360



 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + VAIV D+PG TRD L    +       + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVAIVEDMPGVTRDRLYSHGEWLDREFNLIDTGGIELAD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKE---ISFPKNIDFIFIGTKSD--- 330
           + +  +  ++  L +E AD+I+ +        ++ +E   I F      +    K D   
Sbjct: 66  EPLLNQMREQAELAIEEADVIVFIVNGREGITSADQEVAKILFRSKKPVVLGVNKVDNPD 125

Query: 331 ----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKK 368
               LY  Y+        IS   G GL +L++++      K + 
Sbjct: 126 MHDLLYEFYSLGIGNPFPISGSHGLGLGDLLDEVLKHFPEKVED 169


>gi|86605901|ref|YP_474664.1| GTP-binding protein EngA [Synechococcus sp. JA-3-3Ab]
 gi|123506716|sp|Q2JV46|DER_SYNJA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|86554443|gb|ABC99401.1| GTP-binding protein EngA [Synechococcus sp. JA-3-3Ab]
          Length = 459

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 12/178 (6%)

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ-GKLGEIIRNGYKIVILGH 227
               +A   +          S    N +  L   +  H+ +  +      +   + I+G 
Sbjct: 127 LGLAQAAAFWELGLGEPIPCSAVHGNGVAELLEAVLPHLPEVAQEAADEPDPIAVAIVGR 186

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV--- 284
            N GKSSL N L   + AIV+ I GTTRD +   ++ EG   ++ DTAGIR    +    
Sbjct: 187 PNVGKSSLLNRLVGSERAIVSPIAGTTRDAVDTLVEWEGQSYRLIDTAGIRRKSRVEYGV 246

Query: 285 EKEGIKRTFLEVENADLILLLKEI---NSKKEISFP-----KNIDFIFIGTKSDLYST 334
           E   I R F  ++ +D++LL+ +     ++++         +    I +  K D    
Sbjct: 247 EFFSINRAFKAIQRSDVVLLVIDALEGVTEQDQRLAGRIEEEGRACIIVVNKWDAVEN 304



 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N LA    AIV D PG TRD L  +++  G  +++ DT G+   D
Sbjct: 6   VAVVGRPNVGKSSLVNRLAGVRSAIVHDEPGITRDRLYQEVEWNGRRLRVVDTGGLVFGD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFI--GTKSDLY 332
           D        ++    +  A  ++ + +         K+   + +      +    K +  
Sbjct: 66  DSEFLPHIRQQAMAAMAEAHAVIFVVDGREGLTPADKELADWLRRQPLPVVVAVNKCESG 125

Query: 333 S----------TYTEEYDHLISSFTGEGLEELINKI 358
                                S+  G G+ EL+  +
Sbjct: 126 QLGLAQAAAFWELGLGEPIPCSAVHGNGVAELLEAV 161


>gi|319789668|ref|YP_004151301.1| ribosome-associated GTPase EngA [Thermovibrio ammonificans HB-1]
 gi|317114170|gb|ADU96660.1| ribosome-associated GTPase EngA [Thermovibrio ammonificans HB-1]
          Length = 479

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 27/212 (12%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +   S E   ++  L   +          E  +   K+ I+G  N GKS+L NAL  ++ 
Sbjct: 187 EQLISGESPEELQELSASLERGEEYEIEEEEEKEPIKVAIVGRPNMGKSTLLNALVGEER 246

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLI 302
           AIV+DIPGTTRD +   + +        DTAGIR    I  +E     R+   ++ AD++
Sbjct: 247 AIVSDIPGTTRDAIDTYVRVGDDEFIFIDTAGIRRRGKIKDIEYYSYLRSLDAIDRADVV 306

Query: 303 LLLKEINSKK--------EISFPKNIDFIFIGTKSD-----------------LYSTYTE 337
           +L+ +              ++  K    +    K D                 ++     
Sbjct: 307 VLMVDAQEGPTERDAKIAGMALEKFKPIVIAVNKIDTLKDQKEWERLQRELDLVFDFIPF 366

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                IS+   +GL+EL+ +IK +     KK+
Sbjct: 367 APRVFISAKERKGLKELLKQIKDLYRQYTKKV 398



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 27/201 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN L  + VAI+ + PG TRD +  + D++ + V + DT G+ E D
Sbjct: 7   VAIVGRPNVGKSSLFNRLLGRKVAIIDNTPGVTRDRVVQEADIDEHKVVLVDTGGVVEKD 66

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFI--GTKSD-- 330
                KE  ++    +E AD+I+ + +         ++     +      I    K D  
Sbjct: 67  AHEFAKETTEQAKRAMEEADVIVFVVDGQEGINPLDEEVAKLLRRWKKPVIVAVNKIDEP 126

Query: 331 -----LYSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                +Y  Y   +D    IS+    G+  L  KI   L  + K+               
Sbjct: 127 FMEDLVYDFYRLGFDEVIPISTIHKIGIPTLKEKILEKLPQELKES---------AQRAY 177

Query: 384 SQTVRYLEMASLNEKDCGLDI 404
            +  +  +   L   +   ++
Sbjct: 178 QREEKSKKAEQLISGESPEEL 198


>gi|296104190|ref|YP_003614336.1| GTP-binding protein EngA [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058649|gb|ADF63387.1| GTP-binding protein EngA [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 511

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 224 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 283

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D+VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 284 RGKITDVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 343

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S    E                  H IS+  G G+  L + ++    +  ++   +
Sbjct: 344 WDGLSNEVREQVKETLDFRLGFIDFARVHFISALHGSGVGNLFDSVREAYDSSTRRQSTA 403

Query: 373 IPSH 376
           + + 
Sbjct: 404 MLTR 407



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 25  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 84

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 85  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADSAIAKHLRSREKPTFLVANKTDGID 144

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 145 ADQAIADFWSLGLGDIYPIAASHGRGVTSLLETV 178


>gi|307249625|ref|ZP_07531611.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858323|gb|EFM90393.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 506

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+
Sbjct: 218 IKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRK 277

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              +    EK  + +T   +++A+++LL  +     S +++S            + +  K
Sbjct: 278 RGKVNLAVEKFSVIKTLQAIQDANVVLLTIDARKGISDQDLSLLGFILNAGRSLVIVVNK 337

Query: 329 S-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 D+      E D           H IS+  G G+  L + +K   +   +K   S
Sbjct: 338 WDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTS 397

Query: 373 IPSH 376
           + + 
Sbjct: 398 MLTR 401



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 17/163 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ G+   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGHDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLYS 333
           + VE++  +++ L +E AD++L L +  +     +I        +    + +  K+D  +
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANKTDGIN 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFK 367
             +   +            ++  G G+ +LI ++ + L  +  
Sbjct: 125 ADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLAPLGEQLN 167


>gi|227903851|ref|ZP_04021656.1| GTP-binding protein EngA [Lactobacillus acidophilus ATCC 4796]
 gi|227868738|gb|EEJ76159.1| GTP-binding protein EngA [Lactobacillus acidophilus ATCC 4796]
          Length = 435

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 112/293 (38%), Gaps = 49/293 (16%)

Query: 131 LADLISSETEMQRRLS--------MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           + D I ++ E+    +        +     +L     + + +            D  E+ 
Sbjct: 68  IEDEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIARLLYRTKKPVILAVNKADNPEQR 127

Query: 183 DVQNFSSKEVLNDIL-----------FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           +         L D +            L ++I +     K  E   +     ++G  N G
Sbjct: 128 NDIYDFYSLGLGDPIPVSSSHGTGIGDLLDEIVNDFPAEKDSEAD-DVISFSMIGRPNVG 186

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEG 288
           KSSL N L  +D  IV +  GTTRD +      +G   K+ DTAGIR    +    EK  
Sbjct: 187 KSSLVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGIKFKVVDTAGIRRRGKVYEKTEKYS 246

Query: 289 IKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY---STYTE 337
           + R    +E +D++LL+ + ++            +       I +  K DL    ST  +
Sbjct: 247 VLRAMSAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLPEKNSTSAK 306

Query: 338 EYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           E++                 +S+ TG+ ++++ + +K +  N+ +++  S+ +
Sbjct: 307 EFEREIRSEFQYLDYAPILFVSAKTGQRIDQIPSMVKEVYENQNQRIQSSVLN 359



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD      +  G+   + DT GI    
Sbjct: 6   VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
             +E E   +  + +E AD+I++       + +++ +   + +      I    K+D   
Sbjct: 66  GKIEDEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIARLLYRTKKPVILAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G+ +L+++I +    +       + 
Sbjct: 126 QRNDIYDFYSLGLGDPIPVSSSHGTGIGDLLDEIVNDFPAEKDSEADDVI 175


>gi|165975864|ref|YP_001651457.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|238687527|sp|B0BTQ8|DER_ACTPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|165875965|gb|ABY69013.1| conserved putative GTP-binding protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 506

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+
Sbjct: 218 IKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRK 277

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              +    EK  + +T   +++A+++LL  +     S +++S            + +  K
Sbjct: 278 RGKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNK 337

Query: 329 S-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 D+      E D           H IS+  G G+  L + +K   +   +K   S
Sbjct: 338 WDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTS 397

Query: 373 IPSH 376
           + + 
Sbjct: 398 MLTR 401



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 17/163 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYNFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLYS 333
           + VE++  +++ L +E AD++L L +  +     +I        +    + +  K+D   
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANKTDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFK 367
             +   +            ++  G G+ +LI+++ + L  +  
Sbjct: 125 ADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIDQVLAPLGEQLN 167


>gi|229004376|ref|ZP_04162143.1| GTP-binding protein engA [Bacillus mycoides Rock1-4]
 gi|228756874|gb|EEM06152.1| GTP-binding protein engA [Bacillus mycoides Rock1-4]
          Length = 368

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 26/226 (11%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   ++    L++  +         +  + +    +     L F 
Sbjct: 23  NGRDGVTAADEEVAKILYRSKKPVVLAVNKVDNP------EMRNDIYDFYA-----LGFG 71

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   +    L D   L ++ + H  + +         +  ++G  N GKSSL NAL
Sbjct: 72  EPFPISG-THGLGLGD---LLDEAAKHFPKIEEEAYDDETIRFSLIGRPNVGKSSLVNAL 127

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+++ GTTRD +      +G    I DTAG+R+   +    EK  + R    +
Sbjct: 128 LGQERVIVSNVAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAI 187

Query: 297 ENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST 334
           E +D++L++ +     I   K+I   +       I +  K D    
Sbjct: 188 ERSDVVLVVLDGEEGIIEQDKKIAGYAHDSGRAVIIVVNKWDAVKK 233



 Score = 37.2 bits (85), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 17/94 (18%)

Query: 287 EGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYSTYTEE 338
           +  ++  + ++ AD+I+ +      + +  E    I +      +    K D      + 
Sbjct: 3   QIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPVVLAVNKVDNPEMRNDI 62

Query: 339 YDHL---------ISSFTGEGLEELINKIKSILS 363
           YD           IS   G GL +L+++      
Sbjct: 63  YDFYALGFGEPFPISGTHGLGLGDLLDEAAKHFP 96


>gi|254519255|ref|ZP_05131311.1| small GTP-binding protein [Clostridium sp. 7_2_43FAA]
 gi|226913004|gb|EEH98205.1| small GTP-binding protein [Clostridium sp. 7_2_43FAA]
          Length = 438

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +  +  +    +      +I ++G  N GKSSL N L  ++  IV+DIPGTTRD 
Sbjct: 155 DMLDRVVENFDKFNEEDEEDEFIRIAMIGKPNVGKSSLINRLLGEERLIVSDIPGTTRDS 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +   L+ E     + DTAG+R      + +E+  + RT+  +E AD+ +L+ +       
Sbjct: 215 IDSALETEQGKFILVDTAGLRRKSKVKEEIERYSVIRTYAAIERADVCILMIDATEGVTE 274

Query: 315 SFPK--------NIDFIFIGTKSDLYST-------YTEEYD-----------HLISSFTG 348
              K        N   + I  K DL          Y EE               IS+ TG
Sbjct: 275 QDEKIIGYAHEMNKAIMVIVNKWDLIEKDDKTMQRYKEELQMNLKFLKYAKYLFISAKTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           +   +++   K    N  K++P  I +
Sbjct: 335 QRTHKVLETAKECYDNYSKRIPTGILN 361



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 9/131 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +    +   Y   + DT GI  E 
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGQRISIVQDTPGVTRDRVYAQAEWLNYNFTMIDTGGIEPER 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +DI+ K+  ++  + +E AD+I+ + +              +      + + +  K D  
Sbjct: 66  EDIIVKQMRRQANIAIETADVIIFVVDGKEGLTPADHEVANMLRKSKKEVVLVVNKVDSL 125

Query: 333 STYTEEYDHLI 343
                 ++   
Sbjct: 126 KEEENAWEFYN 136


>gi|16803976|ref|NP_465461.1| GTP-binding protein EngA [Listeria monocytogenes EGD-e]
 gi|46908170|ref|YP_014559.1| GTP-binding protein EngA [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|217963911|ref|YP_002349589.1| GTP-binding protein EngA [Listeria monocytogenes HCC23]
 gi|224498613|ref|ZP_03666962.1| GTP-binding protein EngA [Listeria monocytogenes Finland 1988]
 gi|224501264|ref|ZP_03669571.1| GTP-binding protein EngA [Listeria monocytogenes FSL R2-561]
 gi|226224541|ref|YP_002758648.1| hypothetical protein Lm4b_01954 [Listeria monocytogenes Clip81459]
 gi|254825568|ref|ZP_05230569.1| GTPase [Listeria monocytogenes FSL J1-194]
 gi|254827178|ref|ZP_05231865.1| GTPase [Listeria monocytogenes FSL N3-165]
 gi|254831462|ref|ZP_05236117.1| GTP-binding protein EngA [Listeria monocytogenes 10403S]
 gi|254899366|ref|ZP_05259290.1| GTP-binding protein EngA [Listeria monocytogenes J0161]
 gi|254912495|ref|ZP_05262507.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254931892|ref|ZP_05265251.1| GTPase [Listeria monocytogenes HPB2262]
 gi|254936822|ref|ZP_05268519.1| GTPase [Listeria monocytogenes F6900]
 gi|254993214|ref|ZP_05275404.1| GTP-binding protein EngA [Listeria monocytogenes FSL J2-064]
 gi|255028956|ref|ZP_05300907.1| GTP-binding protein EngA [Listeria monocytogenes LO28]
 gi|284802382|ref|YP_003414247.1| GTP-binding protein EngA [Listeria monocytogenes 08-5578]
 gi|284995524|ref|YP_003417292.1| GTP-binding protein EngA [Listeria monocytogenes 08-5923]
 gi|290892097|ref|ZP_06555093.1| GTPase [Listeria monocytogenes FSL J2-071]
 gi|300763753|ref|ZP_07073750.1| GTPase [Listeria monocytogenes FSL N1-017]
 gi|26006722|sp|Q8Y5W8|DER_LISMO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|67460310|sp|Q71Y78|DER_LISMF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783158|sp|B8DBY9|DER_LISMH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|259645882|sp|C1KWN7|DER_LISMC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|16411390|emb|CAD00015.1| lmo1937 [Listeria monocytogenes EGD-e]
 gi|46881440|gb|AAT04736.1| GTPase family protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|217333181|gb|ACK38975.1| GTP-binding protein EngA [Listeria monocytogenes HCC23]
 gi|225877003|emb|CAS05712.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258599561|gb|EEW12886.1| GTPase [Listeria monocytogenes FSL N3-165]
 gi|258609417|gb|EEW22025.1| GTPase [Listeria monocytogenes F6900]
 gi|284057944|gb|ADB68885.1| GTP-binding protein EngA [Listeria monocytogenes 08-5578]
 gi|284060991|gb|ADB71930.1| GTP-binding protein EngA [Listeria monocytogenes 08-5923]
 gi|290558220|gb|EFD91738.1| GTPase [Listeria monocytogenes FSL J2-071]
 gi|293583444|gb|EFF95476.1| GTPase [Listeria monocytogenes HPB2262]
 gi|293590479|gb|EFF98813.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|293594811|gb|EFG02572.1| GTPase [Listeria monocytogenes FSL J1-194]
 gi|300515489|gb|EFK42539.1| GTPase [Listeria monocytogenes FSL N1-017]
 gi|307571519|emb|CAR84698.1| GTPase family protein [Listeria monocytogenes L99]
 gi|313607930|gb|EFR84070.1| ribosome-associated GTPase EngA [Listeria monocytogenes FSL F2-208]
 gi|328466285|gb|EGF37442.1| GTP-binding protein Der [Listeria monocytogenes 1816]
 gi|328472780|gb|EGF43629.1| GTP-binding protein Der [Listeria monocytogenes 220]
 gi|332312377|gb|EGJ25472.1| GTPase Der [Listeria monocytogenes str. Scott A]
          Length = 436

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 30/240 (12%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  + +A+     I   +     L++  +         +  D++     +    L F 
Sbjct: 91  NGREGVTDADEQVAKILYRSNKPIVLAINKVDNP------EMRDQI-----YDFYSLGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   S    L D+L   + + +H  + +  E   +  K  ++G  N GKSS+ NAL
Sbjct: 140 EPYPISG-SHGLGLGDML---DAVRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNAL 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             +D  IV+DI GTTRD +      +G    + DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           E +D++L++  IN+++ I          +       I +  K D  +   +  +      
Sbjct: 256 ERSDVVLVV--INAEEGIREQDKRIAGYAHDAGRAIIIVVNKWDAINKDEKTINVWTEDI 313



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +   ++   +  + ++ AD+I+        + + + +  +I +  N   +    K D   
Sbjct: 66  EPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
              + YD           IS   G GL ++++ +++    + ++ 
Sbjct: 126 MRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAVRAHFPKEEEEE 170


>gi|148543995|ref|YP_001271365.1| GTP-binding protein EngA [Lactobacillus reuteri DSM 20016]
 gi|184153389|ref|YP_001841730.1| GTP-binding protein EngA [Lactobacillus reuteri JCM 1112]
 gi|194467923|ref|ZP_03073909.1| small GTP-binding protein [Lactobacillus reuteri 100-23]
 gi|166920101|sp|A5VJK4|DER_LACRD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|229784134|sp|B2G718|DER_LACRJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|148531029|gb|ABQ83028.1| small GTP-binding protein [Lactobacillus reuteri DSM 20016]
 gi|183224733|dbj|BAG25250.1| GTP-binding protein [Lactobacillus reuteri JCM 1112]
 gi|194452776|gb|EDX41674.1| small GTP-binding protein [Lactobacillus reuteri 100-23]
          Length = 437

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 17/171 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 6   VAVVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKHFSMIDTGGIEISD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +  +  ++  + ++ AD+I+ + ++ +           I +  N   +    K D   
Sbjct: 66  QPLLTQIRQQAEIAIDEADVIIFVADVENGVTDADEQVARILYRSNKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
             ++ YD+          +SS  G G+ +L++ +     +           
Sbjct: 126 RRSDIYDYYSLGLGEPYAVSSVHGIGMGDLLDAVIKEFPDNAANDEDDSIH 176



 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 89/210 (42%), Gaps = 37/210 (17%)

Query: 201 NDISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           + + + I +          +      +G  N GKSSL NA+  ++  IV+++ GTTRD +
Sbjct: 154 DLLDAVIKEFPDNAANDEDDSIHFSFIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAI 213

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
               +  +G    + DTAGIR+   I    E+  + R+   ++++D++L++  +N+++ I
Sbjct: 214 NTQFETADGQKFTMVDTAGIRKKGKIYENTERYSLMRSMRAIDDSDVVLVV--LNAEEGI 271

Query: 315 ----------SFPKNIDFIFIGTKSDLYST------------YTEEY-------DHLISS 345
                     +       I +  K D                  +E+          +S+
Sbjct: 272 RELDKHIAGYAHEAGCGVIIVVNKWDTLKEKDHRTMTDFTNLIRQEFQYLSYAPIIFVSA 331

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   I+ +  +  +++  ++ +
Sbjct: 332 KTKQRLNQLPGLIEEVYQHHRQRIQSAVLN 361


>gi|297617642|ref|YP_003702801.1| ribosome-associated GTPase EngA [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145479|gb|ADI02236.1| ribosome-associated GTPase EngA [Syntrophothermus lipocalidus DSM
           12680]
          Length = 442

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 29/204 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + + +   +  E      +I ++G  N GKSSL N L  ++  IV++IPGTTRD 
Sbjct: 155 ELLDAVIALLPPAEEEEKDELAVRIALVGRPNVGKSSLLNRLIGEERVIVSEIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINSK--- 311
           +       G    + DTAGIR    I E   +  + R    VE +D++L++ +   +   
Sbjct: 215 IDTPFRYGGNRYVLIDTAGIRRKSRIKEPTERYSVLRALRAVERSDVVLIILDATERVTE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYT---EEYD---------------HLISSFTG 348
                           I I  K DL        +E+D                 IS+ TG
Sbjct: 275 QDKKIAGFVHEAGKSNIIIVNKWDLVKKTERTMKEFDDLIREELKFLAYSPILYISALTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           + ++++I  +  +    ++K+P +
Sbjct: 335 QRVKQVIEVVDFVAEQYWRKVPTA 358



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 18/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN +A    AIV D PG TRD +    +  G    + DT GIR E 
Sbjct: 6   VALVGRPNVGKSTLFNRMAGLRKAIVEDTPGVTRDRIYEQAEWAGREFIVVDTGGIRFEE 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  E  K++ L +E AD+I+++ +              I    N   +    K + +
Sbjct: 66  GDILAPEVKKQSELAIEEADVIVMVVDAREGVTPEDEMVAGILRRANKPVVLAANKVEDF 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             +    D            S+  G   +EL++ + ++L    ++    +   
Sbjct: 126 KKHLGYLDFYRLGLGEPIPVSAIHGMNTDELLDAVIALLPPAEEEEKDELAVR 178


>gi|170289127|ref|YP_001739365.1| small GTP-binding protein [Thermotoga sp. RQ2]
 gi|238688753|sp|B1LBI4|DER_THESQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|170176630|gb|ACB09682.1| small GTP-binding protein [Thermotoga sp. RQ2]
          Length = 439

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 110/286 (38%), Gaps = 41/286 (14%)

Query: 121 GKIDLL-EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           GK  +  E ESLAD +         ++         +      +    ++  + + L F 
Sbjct: 91  GKRGITKEDESLADFLRKSNVDTILVA---------NKAENLREFEREVKPELYS-LGFG 140

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   V    +  +   +  +   +       +    I +  K+ I+G  N GKS+LFNA+
Sbjct: 141 EPIPVSAEHNINLDTLLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAI 200

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE----TDDIVEKEGIKRTFLE 295
             K+ A+V+ IPGTTRD +  ++ ++G      DTAG+R         VEK    R    
Sbjct: 201 LNKERALVSPIPGTTRDPVDEEVFIDGKKYVFVDTAGLRRRSRVEPRTVEKYSNYRVVDS 260

Query: 296 VENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD------- 340
           +E AD+++++ +              +   +    + +  K DL     + +D       
Sbjct: 261 IEKADVVVIVLDATQGITRQDQRIAGLVERRGRASVVVFNKWDLVEHREKRHDEFTKLFR 320

Query: 341 -----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                         S+  G  ++ +I+ I    ++   K+P S  +
Sbjct: 321 EKLYFIDYSPLIFTSADKGWNVDRVIDAINLAYASYTTKVPSSAIN 366



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 20/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++I+G  N GKS+LFN L +K  AIV D  G TRD +   ++  G   K+ DT G+ +  
Sbjct: 4   VLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDIVEWYGKTFKLVDTCGVFDNP 63

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
            DI+ ++  + T   +  ADL+L + +          S  +     N+D I +  K++  
Sbjct: 64  QDIISQKMKEITLNMIREADLVLFVVDGKRGITKEDESLADFLRKSNVDTILVANKAENL 123

Query: 333 STYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +  E               +S+     L+ L+  I   L  K   L  
Sbjct: 124 REFEREVKPELYSLGFGEPIPVSAEHNINLDTLLETIIKKLEEKGLDLES 173


>gi|89099128|ref|ZP_01172007.1| GTP-binding protein EngA [Bacillus sp. NRRL B-14911]
 gi|89086258|gb|EAR65380.1| GTP-binding protein EngA [Bacillus sp. NRRL B-14911]
          Length = 436

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++ + H    K  +   +  K  ++G  N GKSSL NA+  ++  IV++I GTTRD 
Sbjct: 154 DLLDEAAKHFPDTKDKDYGDDVIKFSLIGRPNVGKSSLVNAILGEERVIVSNIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   L   G    I DTAG+R+   +    EK  + R    +E +D++L++ + +     
Sbjct: 214 VDSLLTYNGDQYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVIDADEGILE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
                   +       + +  K D      +                       +S+ T 
Sbjct: 274 QDKKIAGYAHEAGRAVVIVVNKWDAVEKDEKTMKAFETNIREHFQFLDYAPIVFLSALTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + +  LI +I     N   ++  S+ +
Sbjct: 334 KRIHTLIPQINQASENHSMRVETSVLN 360



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + ++IV DIPG TRD +    +       I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERISIVEDIPGVTRDRIYSSAEWLNLDFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +   ++  ++  + +E AD+IL L      + S  E    I +      +    K D   
Sbjct: 66  EPFLEQIRQQAEIAIEEADVILFLTNGREGVTSADEAVAKILYKSKKPVVLGVNKIDNPD 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
              + YD           IS   G GL +L+++      +
Sbjct: 126 MRDQIYDFYALGFGEPIPISGSHGLGLGDLLDEAAKHFPD 165


>gi|258647985|ref|ZP_05735454.1| ribosome-associated GTPase EngA [Prevotella tannerae ATCC 51259]
 gi|260851826|gb|EEX71695.1| ribosome-associated GTPase EngA [Prevotella tannerae ATCC 51259]
          Length = 437

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 90/217 (41%), Gaps = 15/217 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I   +   +  E   N     I+G  NAGKSSL NA   ++  IVTDI GTTRD 
Sbjct: 154 DLLDTIIERLGADQTEEEENNIPHFAIVGRPNAGKSSLINAFIGEERNIVTDIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    D  G+   + DTAGIR+   +    E   + R+   +E++D+ +LL +     E 
Sbjct: 214 ILTRYDKFGFDFYLVDTAGIRKKGKVNEDLEFYSVMRSIRAIEHSDVCILLIDATRGIES 273

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL--SNKFKKLPFS 372
                   I    KS + +    +     S    E ++  I  IKS +   + F  +  S
Sbjct: 274 QDMNIFKVIQKNNKSLVVAINKWDIAENKS---QEAIKHFIEVIKSRMAPFDDFPIVFCS 330

Query: 373 IPSHKRHLYHLSQTVR-------YLEMASLNEKDCGL 402
             + +R    L            ++  + LNE+   L
Sbjct: 331 ALTKQRIYKVLETAKEVYVQRKMHINTSKLNEELLPL 367



 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 75/173 (43%), Gaps = 18/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L     AIV++  GTTRD      +  G +  I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTGTRQAIVSEEAGTTRDRQYGKCEWGGQIFSIVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSD-- 330
           DDI E E  K+  +  E ADLIL L +    I    E    I    NI  I    K +  
Sbjct: 65  DDIFEGEIRKQVLVATEEADLILFLVDNQTGITDLDEDVAMILRQANIPVILCANKIENN 124

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           +      E+        + +S+ TG G  +L++ I   L     +   +   H
Sbjct: 125 IDRYNASEFYKLGLGEPNCLSAITGSGTGDLLDTIIERLGADQTEEEENNIPH 177


>gi|229084606|ref|ZP_04216875.1| GTP-binding protein engA [Bacillus cereus Rock3-44]
 gi|228698682|gb|EEL51398.1| GTP-binding protein engA [Bacillus cereus Rock3-44]
          Length = 436

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 26/226 (11%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   ++    L++  +         +  + +    +     L F 
Sbjct: 91  NGRDGVTAADEEVAKILYRSKKPVVLAVNKVDNP------EMRNDIYDFYA-----LGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   +    L D   L ++ + H  + +         +  ++G  N GKSSL NAL
Sbjct: 140 EPFPISG-THGLGLGD---LLDEAAKHFPKIEEEAYDDETIRFSLIGRPNVGKSSLVNAL 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+++ GTTRD +      +G    I DTAG+R+   +    EK  + R    +
Sbjct: 196 LGQERVIVSNVAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAI 255

Query: 297 ENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST 334
           E +D++L++ +     I   K+I   +       I +  K D    
Sbjct: 256 ERSDVVLVVLDGEEGIIEQDKKIAGYAHDSGRAVIIVVNKWDAVKK 301



 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ +D+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLTQIRQQAEVAIDESDVIIFMTNGRDGVTAADEEVAKILYRSKKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
              + YD           IS   G GL +L+++      
Sbjct: 126 MRNDIYDFYALGFGEPFPISGTHGLGLGDLLDEAAKHFP 164


>gi|116873379|ref|YP_850160.1| GTP-binding protein EngA [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123458584|sp|A0AK49|DER_LISW6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|116742257|emb|CAK21381.1| GTPase family protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 436

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 30/240 (12%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  + +A+     I   +     L++  +         +  D++     +    L F 
Sbjct: 91  NGREGVTDADEQVAKILYRSNKPIVLAINKVDNP------EMRDQI-----YDFYSLGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   S    L D+L   + + +H  + +  E   +  K  ++G  N GKSS+ NAL
Sbjct: 140 EPYPISG-SHGLGLGDML---DAVRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNAL 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             +D  IV+DI GTTRD +      +G    + DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           E +D++L++  IN+++ I          +       I +  K D  +   +  +      
Sbjct: 256 ERSDVVLVV--INAEEGIREQDKRIAGYAHDAGRAIIIVVNKWDAINKDEKTINVWTEDI 313



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +   ++   +  + ++ AD+I+        + + + +  +I +  N   +    K D   
Sbjct: 66  EPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
              + YD           IS   G GL ++++ +++    + ++ 
Sbjct: 126 MRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAVRAHFPKEEEEE 170


>gi|190149696|ref|YP_001968221.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263004|ref|ZP_07544626.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|238692380|sp|B3H0R7|DER_ACTP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189914827|gb|ACE61079.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871630|gb|EFN03352.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 506

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+
Sbjct: 218 IKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRK 277

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              +    EK  + +T   +++A+++LL  +     S +++S            + +  K
Sbjct: 278 RGKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNK 337

Query: 329 S-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 D+      E D           H IS+  G G+  L + +K   +   +K   S
Sbjct: 338 WDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKNSTS 397

Query: 373 IPSH 376
           + + 
Sbjct: 398 MLTR 401



 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 17/163 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLYS 333
           + VE++  +++ L +E AD++L L +  +     +I        +    + +  K+D   
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANKTDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFK 367
             +   +            ++  G G+ +LI+++ + L  +  
Sbjct: 125 ADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIDQVLAPLGEQLN 167


>gi|303252646|ref|ZP_07338809.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307247405|ref|ZP_07529452.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302648614|gb|EFL78807.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306856102|gb|EFM88258.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 506

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+
Sbjct: 218 IKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRK 277

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              +    EK  + +T   +++A+++LL  +     S +++S            + +  K
Sbjct: 278 RGKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNK 337

Query: 329 S-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 D+      E D           H IS+  G G+  L + +K   +   +K   S
Sbjct: 338 WDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTS 397

Query: 373 IPSH 376
           + + 
Sbjct: 398 VLTR 401



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 17/163 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLYS 333
           + VE++  +++ L +E AD++L L +  +     +I        +    + +  K+D   
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANKTDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFK 367
             +   +            ++  G G+ +LI ++ + L  +  
Sbjct: 125 ADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLAPLGEQLN 167


>gi|32034718|ref|ZP_00134849.1| COG1160: Predicted GTPases [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126207887|ref|YP_001053112.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae L20]
 gi|307260878|ref|ZP_07542564.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|166224300|sp|A3MZC1|DER_ACTP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|126096679|gb|ABN73507.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|306869445|gb|EFN01236.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 506

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+
Sbjct: 218 IKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRK 277

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              +    EK  + +T   +++A+++LL  +     S +++S            + +  K
Sbjct: 278 RGKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNK 337

Query: 329 S-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 D+      E D           H IS+  G G+  L + +K   +   +K   S
Sbjct: 338 WDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTS 397

Query: 373 IPSH 376
           + + 
Sbjct: 398 MLTR 401



 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 17/163 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLYS 333
           + VE++  +++ L +E AD++L L +  +     +I        +    + +  K+D   
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANKTDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFK 367
             +   +            ++  G G+ +LI+++ + L  +  
Sbjct: 125 ADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIDQVLAPLGEQLN 167


>gi|257784531|ref|YP_003179748.1| small GTP-binding protein [Atopobium parvulum DSM 20469]
 gi|257473038|gb|ACV51157.1| small GTP-binding protein [Atopobium parvulum DSM 20469]
          Length = 441

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 11/172 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +DI +   +            + I+G  N GKSSL N LA K  +IV+D+ GTTRD 
Sbjct: 157 DLLDDIVNAFPEADEEPEDDGILNLAIIGRPNVGKSSLANRLANKKRSIVSDVAGTTRDA 216

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN----- 309
           +   ++ +G  +++ DTAGIR+   +    E   + R    ++ AD+ LL+ + +     
Sbjct: 217 IDTMIEWKGTPIRLVDTAGIRKKSQVHEDVEYYSLVRGLQAMDRADICLLVVDASVGVTE 276

Query: 310 ---SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
                  ++  +    + +  K DL  + T+  +   S          I  I
Sbjct: 277 QDQKLANMAVERGCALVLLLNKWDLIDSETKRDEVAASVAKRLAFAPWIASI 328



 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS+L N +A+K  AIV +  G TRD    D D  G   K+ DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLVNRIAEKRDAIVHESRGVTRDRSYHDADWNGREFKLIDTGGIESIK 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSD- 330
           + D       ++  L  + AD+I+ + +    +  + E    I          +  K D 
Sbjct: 66  SQDRFAPHIREQALLACDEADVIVFVVDGTTGVTDEDEEVARIVRKSTKPVFLVVNKKDN 125

Query: 331 -------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                  L+  Y       +  S+  G G  +L++ I +      ++       +
Sbjct: 126 PATEQDGLWDFYALGCGEPMPLSASHGHGTGDLLDDIVNAFPEADEEPEDDGILN 180


>gi|303249765|ref|ZP_07335969.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307251953|ref|ZP_07533854.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307256448|ref|ZP_07538230.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|302651332|gb|EFL81484.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860645|gb|EFM92657.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306865078|gb|EFM96979.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 506

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+
Sbjct: 218 IKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRK 277

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              +    EK  + +T   +++A+++LL  +     S +++S            + +  K
Sbjct: 278 RGKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNK 337

Query: 329 S-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 D+      E D           H IS+  G G+  L + +K   +   +K   S
Sbjct: 338 WDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTS 397

Query: 373 IPSH 376
           + + 
Sbjct: 398 MLTR 401



 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 17/163 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLYS 333
           + VE++  +++ L +E AD++L L +  +     +I        +    + +  K+D   
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANKTDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFK 367
             +   +            ++  G G+ +LI+++ + L  +  
Sbjct: 125 ADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIDQVLAPLGEQLN 167


>gi|47097577|ref|ZP_00235108.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854]
 gi|47014052|gb|EAL05054.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854]
          Length = 400

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 30/240 (12%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  + +A+     I   +     L++  +         +  D++     +    L F 
Sbjct: 55  NGREGVTDADEQVAKILYRSNKPIVLAINKVDNP------EMRDQI-----YDFYSLGFG 103

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   S    L D+L   + + +H  + +  E   +  K  ++G  N GKSS+ NAL
Sbjct: 104 EPYPISG-SHGLGLGDML---DAVRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNAL 159

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             +D  IV+DI GTTRD +      +G    + DTAG+R+   +    EK  + R    +
Sbjct: 160 LGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAI 219

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           E +D++L++  IN+++ I          +       I +  K D  +   +  +      
Sbjct: 220 ERSDVVLVV--INAEEGIREQDKRIAGYAHDAGRAIIIVVNKWDAINKDEKTINVWTEDI 277



 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 54/133 (40%), Gaps = 17/133 (12%)

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL-------LK 306
           TRD +    +  G    I DT GI  +D+   ++   +  + ++ AD+I+        + 
Sbjct: 2   TRDRIYNSAEWLGKEFNIIDTGGIDLSDEPFLEQIRAQAEIAIDEADVIIFITNGREGVT 61

Query: 307 EINSK-KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELIN 356
           + + +  +I +  N   +    K D      + YD           IS   G GL ++++
Sbjct: 62  DADEQVAKILYRSNKPIVLAINKVDNPEMRDQIYDFYSLGFGEPYPISGSHGLGLGDMLD 121

Query: 357 KIKSILSNKFKKL 369
            +++    + ++ 
Sbjct: 122 AVRAHFPKEEEEE 134


>gi|156743465|ref|YP_001433594.1| GTP-binding protein EngA [Roseiflexus castenholzii DSM 13941]
 gi|156234793|gb|ABU59576.1| small GTP-binding protein [Roseiflexus castenholzii DSM 13941]
          Length = 494

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 118/291 (40%), Gaps = 31/291 (10%)

Query: 112 EFSRRAFENGKIDLLEAESLADLISS-ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           E +RR  E  ++ + E++++  ++ S E       ++  +            +K  +   
Sbjct: 75  EIARRVREQAELAIAESDAIIFIVDSREGLTAADAAVAEVLRRTDKPVVLAANKADNHER 134

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            + A   ++         S      +  + + ++  +   ++ E      KI I+G  N 
Sbjct: 135 AMNAVEFYALNLGEPIPMSAYHGIGVGDVLDRVTEALPVVEMEE-DETAVKIAIVGRPNV 193

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKE 287
           GKSSL N L  ++ ++V+DIPGTTRD +   +++ G    + DTAGIR   + D  +E+ 
Sbjct: 194 GKSSLLNRLIGQERSVVSDIPGTTRDSIDTPIEIGGVRALLIDTAGIRRRGKIDRGLERY 253

Query: 288 GIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY 339
            + R    +E AD+ LLL +              +          +  K DL       +
Sbjct: 254 SVMRALRAIERADVALLLIDATEGVTAQDTHIAGMILESLKGVAILVNKWDLVVKDAYTF 313

Query: 340 DH------------------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D                    IS+ TG+ +++++     I  N+ +++P S
Sbjct: 314 DQFSRHVREAFKFMSYAPLLFISAKTGQRVDKVLPLALDIARNRQRRIPTS 364



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 26/179 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L  +  AIV DIPGTTRD L  D +  G +  + DTAG+   +
Sbjct: 5   VALVGRPNVGKSTLFNRLIGERRAIVEDIPGTTRDRLYGDTEWNGRVFTVVDTAGLLLDE 64

Query: 282 D---------IVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIF 324
           D          + +   ++  L +  +D I+ + +          +  E+    +   + 
Sbjct: 65  DDLTPGTPQLEIARRVREQAELAIAESDAIIFIVDSREGLTAADAAVAEVLRRTDKPVVL 124

Query: 325 IGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              K+D +       +           +S++ G G+ ++++++   L     +   +  
Sbjct: 125 AANKADNHERAMNAVEFYALNLGEPIPMSAYHGIGVGDVLDRVTEALPVVEMEEDETAV 183


>gi|55981360|ref|YP_144657.1| GTP-binding protein EngA [Thermus thermophilus HB8]
 gi|55772773|dbj|BAD71214.1| GTP-binding protein [Thermus thermophilus HB8]
          Length = 431

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 71/124 (57%), Gaps = 8/124 (6%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  NAGKSSL NA+  ++  IV++ PGTTRD + ++    G    + DTAGIR
Sbjct: 173 GIRLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDAIDVEFFFGGQRFVLVDTAGIR 232

Query: 279 ET-DDIVEKEGIKRTFLEVENADLILLLKE---INSKK----EISFPKNIDFIFIGTKSD 330
           +  +++VE+  I+R+   ++ AD++LL+ +   +  ++      +  +    + + TK D
Sbjct: 233 KRPENLVEELAIRRSLRAMDEADVVLLVVDPFQVGDRELKLANEALDRGKPVLLVITKWD 292

Query: 331 LYST 334
           L   
Sbjct: 293 LVDK 296



 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 88/206 (42%), Gaps = 22/206 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+VI+G  N GKSSLFN L KK  A+V D+PG TRD+    ++ +     + DT G+  +
Sbjct: 3   KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGL-WS 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D  EK+  ++    +E+A+++L   +  ++         E    K    I + TK D  
Sbjct: 62  GDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                L   Y   +      SS    GLEEL+  I   L  +  +    +   +  +   
Sbjct: 122 KHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERLPVRQIETEPEVAGIRLAIVGR 181

Query: 384 SQT-VRYLEMASLNEKDCGLDIIAEN 408
                  L  A L E+     I++E 
Sbjct: 182 PNAGKSSLLNAILGEERV---IVSEE 204


>gi|289435286|ref|YP_003465158.1| GTPase family protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171530|emb|CBH28074.1| GTPase family protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|313632616|gb|EFR99602.1| ribosome-associated GTPase EngA [Listeria seeligeri FSL N1-067]
 gi|313637164|gb|EFS02696.1| ribosome-associated GTPase EngA [Listeria seeligeri FSL S4-171]
          Length = 436

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 30/240 (12%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  + +A+     I   +     L++  +         +  D++     +    L F 
Sbjct: 91  NGREGVTDADEQVAKILYRSNKPIVLAINKVDNP------EMRDQI-----YDFYSLGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   S    L D+L   + + +H  + +  E   +  K  ++G  N GKSS+ NAL
Sbjct: 140 EPYPISG-SHGLGLGDML---DAVRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNAL 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             +D  IV+DI GTTRD +      +G    + DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           E +D++L++  IN+++ I          +       I +  K D  +   +  +      
Sbjct: 256 ERSDVVLVV--INAEEGIREQDKRIAGYAHDAGRAMIIVVNKWDAINKDEKTINVWTEDI 313



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKDFNIIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +   ++   +  + ++ AD+I+        + + + +  +I +  N   +    K D   
Sbjct: 66  EPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
              + YD           IS   G GL ++++ +++    + ++ 
Sbjct: 126 MRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAVRAHFPKEEEEE 170


>gi|317128566|ref|YP_004094848.1| ribosome-associated GTPase EngA [Bacillus cellulosilyticus DSM
           2522]
 gi|315473514|gb|ADU30117.1| ribosome-associated GTPase EngA [Bacillus cellulosilyticus DSM
           2522]
          Length = 438

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++              +  +I I+G  N GKSSL NA+  ++  IV+DIPGTTRD 
Sbjct: 154 DLLDEVIKQFPSQTEDVYDEDTIRISIIGRPNVGKSSLTNAILGEERVIVSDIPGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +      +G    + DTAG+R+   +    EK  + R    +E +D++L++       I 
Sbjct: 214 IDTPFSKDGQDYVVIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLMVINGEEGMIE 273

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST 334
             K+I   +       I +  K D+   
Sbjct: 274 QDKKIAGYAHEAGRAVILVVNKWDVVEK 301



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + +AIV D PG TRD +    +       I DT GI   D
Sbjct: 6   LAIVGRPNVGKSTIFNRIVGERIAIVEDKPGVTRDRIYSSAEWLNKEFNIIDTGGIEIND 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + +  +   +  L +E AD+I  +               +I F      +    K D  S
Sbjct: 66  EPLMVQMRYQAELAIEEADVICFIVNGREGITSADEEVAQILFRSKKPIVLGVNKMDDPS 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
            +   Y+           IS   G GL +L++++     ++ + +
Sbjct: 126 MHDRLYEFYSLGIGDPKPISGSHGIGLGDLLDEVIKQFPSQTEDV 170


>gi|166030917|ref|ZP_02233746.1| hypothetical protein DORFOR_00598 [Dorea formicigenerans ATCC
           27755]
 gi|166029184|gb|EDR47941.1| hypothetical protein DORFOR_00598 [Dorea formicigenerans ATCC
           27755]
          Length = 442

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +  H  +    E   +  ++ I+G  N GKSS+ N L  +   IV+DI GTTRD 
Sbjct: 156 DMLDKVIEHFPEHAGEEEEDSRPRVAIVGKPNVGKSSIINKLLGEQRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++   G      DTAG+R  + I    E+  I RT   VE AD++L++ +       
Sbjct: 216 IDTEIVHNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLVVIDATQGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE---EYDH---------------LISSFTG 348
                  I+  +    I +  K D      +   EY++                +S+ TG
Sbjct: 276 QDAKVAGIAHERGKGVIIVVNKWDAIEKNDKTMREYENEVRRVLSFMPYAEIMYVSAVTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L ++ + I  ++ N+  ++   + +
Sbjct: 336 QRLPKMFDMIDMVIENQTLRVATGVLN 362



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+        + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVSWLDKDFTLIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + ++ +D+I+ + ++            ++        I +  K D +
Sbjct: 66  KDIILSQMREQAQIAIDTSDVIIFITDVKQGLVDSDSKVADMLRRSGKPVILVVNKVDNF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             Y  +              IS+ +  GL ++++K+         +    
Sbjct: 126 DKYMADTYEFYNLGIGDPVPISASSRLGLGDMLDKVIEHFPEHAGEEEED 175


>gi|78045106|ref|YP_360738.1| GTP-binding protein EngA [Carboxydothermus hydrogenoformans Z-2901]
 gi|123575819|sp|Q3AAU6|DER_CARHZ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|77997221|gb|ABB16120.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 440

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 29/208 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + S ++  +  E      KI ++G  N GKSSL NAL  ++  +V+DIPGTTRD 
Sbjct: 155 DLLDLVISKLNFPEDYEDENPVVKIAVVGRPNVGKSSLVNALLGEERVVVSDIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +   +  +G    + DTAG+R    I    E+  + R+   +  AD+ LL+         
Sbjct: 215 IDTPMWYQGKPYLLIDTAGMRRKSRIEEDLERYSVNRSIKAIRRADVALLVISAEEGVTE 274

Query: 315 SFPK--------NIDFIFIGTKSDLYSTYTEEYD------------------HLISSFTG 348
              K            I +  K DL     +  D                    +S+ TG
Sbjct: 275 QDKKIAGLIHEYGRGVIIVVNKWDLIEKDAKTADRYKEHIYFELGFLKYAPVIFVSAKTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSH 376
           + L +L+  +  +     K++  SI + 
Sbjct: 335 QRLNKLMELVDRVSFEHQKRVATSILNQ 362



 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD L  + + +G +  + DT G+  ++
Sbjct: 6   VAIVGRPNVGKSTLFNRIIGERIAIVEDTPGVTRDRLYSEAEWQGKVFDLIDTGGLEFSE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
           D++  +  ++    +  ADLIL + +    I S  E         +   I +  K D Y 
Sbjct: 66  DLITTKVREQIEKAINEADLILFVCDSREGITSTDEAVAKNLRKSDKPVILVANKVDDYL 125

Query: 334 TYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                +             +S+  G  + +L++ + S L+        +
Sbjct: 126 NPPANFYDLYRLGLGEPFPVSAANGTNVGDLLDLVISKLNFPEDYEDEN 174


>gi|289449698|ref|YP_003474787.1| ribosome-associated GTPase EngA [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184245|gb|ADC90670.1| ribosome-associated GTPase EngA [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 441

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+ FN LA + ++IV D PG TRD +  +++  G    + DT GI   T
Sbjct: 6   VAVVGRPNVGKSTFFNFLAGERISIVDDTPGVTRDRIYAEVEWLGRKFSLIDTGGIEPRT 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD-L 331
           DD++ ++   +  L +E AD+IL + ++ +    +               I    K D +
Sbjct: 66  DDVLLQQMRIQAELAIETADVILFMVDLKAGLHAADADIANMLRKTKKPVILAVNKCDHV 125

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
             T  E Y+            S+  G G+ EL++ I   L       P +
Sbjct: 126 GDTPPEAYEFYNLGLGDFFPISAVHGLGMGELLDAIVENLPEPETDDPAN 175



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 90/221 (40%), Gaps = 20/221 (9%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I  ++ + +  +   +  KI ++G  NAGKSSL N L  ++ +IV+ I GTTRD 
Sbjct: 156 ELLDAIVENLPEPETDDPANHRVKICLIGKPNAGKSSLTNRLLGQNRSIVSSISGTTRDS 215

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI------ 308
           L   L  E     + DTAG+R+    DD VE+  + R    +E +D+ L+L +       
Sbjct: 216 LDTPLTNEFGNYVLIDTAGLRKKSRIDDQVERYSMIRALAAIERSDVCLILIDAIDGITE 275

Query: 309 --NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                   +       IF+  K D+ +  T   +    S   E    +       LS   
Sbjct: 276 QDTKVAGYAHNAGKASIFVVNKWDIVNKETGTMEEYTRSI-RERFSYMPYAQVLFLSALT 334

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
                 +     H+Y   Q  R L    LN      D IAE
Sbjct: 335 GARCDKVFPMVNHVY--EQACRKLTTGVLN------DFIAE 367


>gi|228990617|ref|ZP_04150582.1| GTP-binding protein engA [Bacillus pseudomycoides DSM 12442]
 gi|228996716|ref|ZP_04156353.1| GTP-binding protein engA [Bacillus mycoides Rock3-17]
 gi|228763035|gb|EEM11945.1| GTP-binding protein engA [Bacillus mycoides Rock3-17]
 gi|228769143|gb|EEM17741.1| GTP-binding protein engA [Bacillus pseudomycoides DSM 12442]
          Length = 436

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 26/226 (11%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   ++    L++  +         +  + +    +     L F 
Sbjct: 91  NGRDGVTAADEEVAKILYRSKKPVVLAVNKVDNP------EMRNDIYDFYA-----LGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   +    L D   L ++ + H  + +         +  ++G  N GKSSL NAL
Sbjct: 140 EPFPISG-THGLGLGD---LLDEAAKHFPKIEEEAYDDETIRFSLIGRPNVGKSSLVNAL 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+++ GTTRD +      +G    I DTAG+R+   +    EK  + R    +
Sbjct: 196 LGQERVIVSNVAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAI 255

Query: 297 ENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST 334
           E +D++L++ +     I   K+I   +       I +  K D    
Sbjct: 256 ERSDVVLVVLDGEEGIIEQDKKIAGYAHDSGRAVIIVVNKWDAVKK 301



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
              + YD           IS   G GL +L+++      
Sbjct: 126 MRNDIYDFYALGFGEPFPISGTHGLGLGDLLDEAAKHFP 164


>gi|70732274|ref|YP_262030.1| GTP-binding protein EngA [Pseudomonas fluorescens Pf-5]
 gi|123653208|sp|Q4K6V3|DER_PSEF5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|68346573|gb|AAY94179.1| GTP-binding protein EngA [Pseudomonas fluorescens Pf-5]
          Length = 490

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNDEKYTLIDTAG 252

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   I    EK  + +T   +++A++++ + +               +       +  
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D       +Y                 H IS+  G G+  L   +++   +   + 
Sbjct: 313 LNKWDGMQPSERDYVKTELQRRLFFVDFADIHFISALHGTGVGNLYQSVQNSFKSAVTRW 372

Query: 370 PFS 372
           P S
Sbjct: 373 PTS 375



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRTYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD 330
             ++++  +++ L +E AD++L L +  +          E    +N     I  K D
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFLVDAKAGFTAADQMIGEHLRKRNKTSYVIANKVD 121


>gi|307244110|ref|ZP_07526228.1| ribosome-associated GTPase EngA [Peptostreptococcus stomatis DSM
           17678]
 gi|306492481|gb|EFM64516.1| ribosome-associated GTPase EngA [Peptostreptococcus stomatis DSM
           17678]
          Length = 442

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  +  +G   E   +  ++ I G  NAGKSS+ N +  ++  IV+ I GTTRD 
Sbjct: 158 DLLDEVVENFPEGMNTEYDEDVIRVAITGKPNAGKSSILNNILGEERVIVSPIAGTTRDA 217

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +    + +     + DTAGIR    +    E+  + R+   V+ AD++L++ +       
Sbjct: 218 IDTYFEKDDNKFLLIDTAGIRRRSKVYENVERFSVIRSMSAVDRADVVLIVIDATEGVTE 277

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                  I+  +    IF+  K DL   
Sbjct: 278 QDTKIAGIAHDEGKACIFVVNKWDLIEK 305



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 18/170 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   + ++G  N GKS++FN L    ++IV D PG TRD +  +++       I DT GI
Sbjct: 5   NRPIVAVVGRPNVGKSTIFNKLTGTKISIVEDTPGVTRDRIFGEVEWLNKYFTIIDTGGI 64

Query: 278 R-ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
             E+DDI+  +   +  L V+ A +IL + +  S          +I        + +  K
Sbjct: 65  EPESDDIILSQMRNQAMLAVDMAHVILFVVDGKSGLTAADKEVADILRRTKKPVLLVVNK 124

Query: 329 SDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
            D  S +   YD           IS     GL +L++++           
Sbjct: 125 IDSKSQFDNVYDFYELGLGNPIAISGANSMGLGDLLDEVVENFPEGMNTE 174


>gi|313203779|ref|YP_004042436.1| ribosome-associated GTPase enga [Paludibacter propionicigenes WB4]
 gi|312443095|gb|ADQ79451.1| ribosome-associated GTPase EngA [Paludibacter propionicigenes WB4]
          Length = 437

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 18/168 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV D  GTTRD      + EG    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTKSRRAIVNDEAGTTRDRQYGKCEWEGREFSVIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             + D+ E E  +   L +E AD+IL L +I +          +I   +    + +  K+
Sbjct: 62  INSSDVFEGEIKRHVVLAIEEADVILFLVDIQNGITDYDLEVAQILRGQTKPVMLVSNKA 121

Query: 330 DLYS---------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           D +                 H+IS+  G G  + ++K+ +     F  
Sbjct: 122 DTFEWQYGVAEFYKLGLGEPHMISAINGLGTGDFLDKLLTYFKPDFSD 169



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 11/147 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   ++  IVTDI GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSIINAFVGEERTIVTDIAGTTRDSIYTRFNKFGHDFYLVDTAGIRKK 236

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
             +    E   + R+   +EN D+ +L+ +     E        +       FI    K 
Sbjct: 237 AKVNEDLEYYSVVRSIRAIENCDVCILMIDATRGIESQDLNIFSLIQKNRKGFIVCVNKW 296

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELIN 356
           DL             +   E L   ++
Sbjct: 297 DLIENKESNDIKKYEATIRERLAPFVD 323


>gi|220906981|ref|YP_002482292.1| GTP-binding protein EngA [Cyanothece sp. PCC 7425]
 gi|254783149|sp|B8HQE1|DER_CYAP4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|219863592|gb|ACL43931.1| small GTP-binding protein [Cyanothece sp. PCC 7425]
          Length = 453

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 91/207 (43%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + S++          +   + I+G  N GKSSL NA+  +  AIV+ I GTTRD 
Sbjct: 156 ELLDQVVSYLPPTDQQAGEEDIINVAIVGRPNVGKSSLLNAVVGEQRAIVSPISGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLLKEI-----N 309
           +   ++ +G   ++ DTAGIR+    D   E  GI R F  ++ A+++LL+ +       
Sbjct: 216 IDTLVERDGQRYRLIDTAGIRKQKNVDYGPEFFGINRAFKAIQRAEVVLLVLDALDGVTE 275

Query: 310 SKKEIS---FPKNIDFIFIGTKSDLYST-----------------YTEEYDHLI-SSFTG 348
             ++++     +    + +  K D                     +    DH+  S+ TG
Sbjct: 276 QDQKLAGRIVDEGCACVIVVNKWDAVEKDSYTIYDYQHQVEQRLNFIGWSDHIFISAATG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + +E++  ++        +++  S+ +
Sbjct: 336 QRVEKIFERVHLAAEQHRRRVSTSVIN 362



 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 19/174 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + VAIV D PG TRD        +     + DT G+   D
Sbjct: 6   VAIVGRPNVGKSTLVNRLTGERVAIVHDQPGVTRDRTYRPSFWQDRDFLVVDTGGLVFAD 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLY 332
           D        ++    +  A + +L+ +       + +EI+     +++  +    K +  
Sbjct: 66  DTEFLPLIRQQVVTALSEARVAILVVDGQQGITAADEEIAQWLRQQSLPVLVAVNKCESP 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                +               S+  G G  EL++++ S L    ++       +
Sbjct: 126 QQGLAQGAEFWELGLGEPFPISAIHGNGTGELLDQVVSYLPPTDQQAGEEDIIN 179


>gi|300854433|ref|YP_003779417.1| putative GTP-binding protein [Clostridium ljungdahlii DSM 13528]
 gi|300434548|gb|ADK14315.1| putative GTP-binding protein [Clostridium ljungdahlii DSM 13528]
          Length = 438

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 106/263 (40%), Gaps = 29/263 (11%)

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
                +  M  +        ++K+ +I         ++         S      +  + +
Sbjct: 99  AADREVAQMLRKSKKPVVLVVNKIDNINQNAYVYEFYNLGIGEPMAISASQALGLGDMLD 158

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +  +    +  +I     K+  +G  N GKSSL N L  ++  IV+DIPGTTRD +   
Sbjct: 159 KVVENFKDDEDDDIDSEYIKVAFIGKPNVGKSSLINKLLGEERVIVSDIPGTTRDAVDSY 218

Query: 262 LDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI------NSKK 312
           L+ +   + + DTAG+R+     + +E+  + RT+  +E AD+ +L+ +         +K
Sbjct: 219 LETDYGKLLLIDTAGLRKKSKVKEEIERYSVIRTYTAIERADVCVLILDAVHNISEQDEK 278

Query: 313 EI--SFPKNIDFIFIGTKSDLYSTYTEEYDHL------------------ISSFTGEGLE 352
            I  +   +   + I  K DL    T+  D                    IS+ TG+ + 
Sbjct: 279 IIGYAHELSKSIMVIINKWDLIDKDTKTVDKYKTEIGTSLSFMPYAPYLFISAKTGQRVN 338

Query: 353 ELINKIKSILSNKFKKLPFSIPS 375
           +++  IK    N  K++   + +
Sbjct: 339 KVLQLIKECYDNYCKRIKTGVLN 361



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 9/131 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K ++IV D PG TRD +  + +   Y   I DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRISIVEDTPGVTRDRVYAEAEWLKYNFTIIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
            D++  +  ++  + VE AD I+ + +             ++        + +  K D  
Sbjct: 66  TDVIISQMRRQAQVAVETADTIIFIVDGKEGVTAADREVAQMLRKSKKPVVLVVNKIDNI 125

Query: 333 STYTEEYDHLI 343
           +     Y+   
Sbjct: 126 NQNAYVYEFYN 136


>gi|260910017|ref|ZP_05916700.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635847|gb|EEX53854.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 437

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L K   AIV+D  GTTRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTKTRSAIVSDTAGTTRDRQYGKCDWSGREFSVVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E    ++  +  E ADL+L L ++N+          +I     +  + +  K+D  
Sbjct: 65  DDIFEDAIRRQVLVATEEADLVLFLVDVNTGVTDLDEDVAQILRRTKVPVLLVVNKADNN 124

Query: 333 STYTEEY---------DHLISSFTGEGLEELINK-IKSILSNKFKKLPFSIP 374
               E              IS+ TG G  +L++  I+ +     + +   IP
Sbjct: 125 EQIYEAPVFYSLGLGDPFPISAATGSGTGDLLDAVIEKLKPGDSENVEDGIP 176



 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 16/216 (7%)

Query: 201 NDISSHISQGKLG--EIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           + + + I + K G  E + +G  +  ++G  N GKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DLLDAVIEKLKPGDSENVEDGIPRFAVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    D  G+   + DTAGIR  + +    E   + R+   +E++D+ +L+ +     E 
Sbjct: 214 IYTRFDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRSIEHSDVCILMIDATRGIEA 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                  +        + +  K DL +   ++      +   E +   ++      S   
Sbjct: 274 QDMNIFQLIQKNQKSLVVVVNKWDLVADKDQKVIKTFENAIRERMAPFVDFPIIFASALT 333

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           K+  F +    + +Y   +   ++  + LNE    L
Sbjct: 334 KQRIFKVLETAKQVYLNRKA--HVGTSKLNEVMLPL 367


>gi|190574024|ref|YP_001971869.1| GTP-binding protein EngA [Stenotrophomonas maltophilia K279a]
 gi|229463762|sp|B2FNR1|DER_STRMK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|190011946|emb|CAQ45567.1| putative GTP-binding protein [Stenotrophomonas maltophilia K279a]
          Length = 465

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 102/255 (40%), Gaps = 41/255 (16%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL---------- 197
              +  L      W+ KL+     +   +D ++E+ V++  ++    ++L          
Sbjct: 93  REGTSALDDEILAWLRKLSRPTLLLINKIDGTDEDSVRSEFARYGFGEMLTVSAAHRQGL 152

Query: 198 -FLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             L +++   + +   GE + N     +I  +G  N GKS+L N +  ++  I +D+PGT
Sbjct: 153 DDLLDEVIQRLPEEGSGEELDNDPNRIRIAFVGRPNVGKSTLVNRILGEERMIASDVPGT 212

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           TRD + +DL+ +G   ++ DTAG+R     D++VEK  + +T   +E   + +L+ +   
Sbjct: 213 TRDSIAVDLERDGREYRLIDTAGLRRRSRVDEVVEKFSVVKTMQSIEQCQVAVLMLDATE 272

Query: 311 K--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI----------------SSF 346
                               +    K D  + Y  E    +                S+ 
Sbjct: 273 GVTDQDATVLGAVLDAGRALVIAINKWDGLTEYQREQAETMLSLKLGFVPWAESVRISAK 332

Query: 347 TGEGLEELINKIKSI 361
            G GL EL   +   
Sbjct: 333 HGSGLRELFRAVHRA 347



 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 18/174 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G  N GKS++FNAL +   A+V D PG TRD       L+      + DT GI   
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEDNHFLVVDTGGIAGE 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSD-- 330
           D+ +     ++       ADLIL + +          + +++ +      + +  K D  
Sbjct: 65  DEGLAGATTRQARAAAAEADLILFVVDAREGTSALDDEILAWLRKLSRPTLLLINKIDGT 124

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                   ++ Y       +S+   +GL++L++++   L  +          ++
Sbjct: 125 DEDSVRSEFARYGFGEMLTVSAAHRQGLDDLLDEVIQRLPEEGSGEELDNDPNR 178


>gi|154505327|ref|ZP_02042065.1| hypothetical protein RUMGNA_02842 [Ruminococcus gnavus ATCC 29149]
 gi|153794370|gb|EDN76790.1| hypothetical protein RUMGNA_02842 [Ruminococcus gnavus ATCC 29149]
          Length = 450

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++ SH  +G          KI I+G  N GKSS+ N L  ++  IV+DI GTTRD 
Sbjct: 164 DMLDEVVSHFPEGAGETEEDERPKIAIVGKPNVGKSSIVNKLLGENRVIVSDIAGTTRDA 223

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +  E       DTAG+R  + I    E+  I RT   VE AD++L++ +       
Sbjct: 224 IDTAIKHEDREYIFIDTAGLRRKNKIKEELERFSIIRTVTAVERADVVLMVIDATEGVTE 283

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE-----EYDH-------------LISSFTG 348
                  I+  +    I +  K D      +     E D               +S+ TG
Sbjct: 284 QDAKIAGIAHERGKGVIIVVNKWDAIEKNDKTMKQYENDIRTTLAYMPYAEIMYVSAKTG 343

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + I  ++ ++  ++   + +
Sbjct: 344 QRLNKLYDMIDMVIDSQTLRIQTGVLN 370



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  D+        + DT GI  ++
Sbjct: 14  VAIVGRPNVGKSTLFNTLAGERISIVKDTPGVTRDRIYADVSWLDKEFTMIDTGGIEPDS 73

Query: 281 DDIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + ++ AD+I+        L + +SK  ++        + +  K D +
Sbjct: 74  SDIILSQMREQAQIAIDTADVIVFITDVRQGLVDADSKVADMLRRSKKPVVLVVNKVDNF 133

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +  +              IS+ +  G+ ++++++ S       +    
Sbjct: 134 DKFMPDVYEFYNLGIGDPVPISAASRLGIGDMLDEVVSHFPEGAGETEED 183


>gi|323491635|ref|ZP_08096814.1| GTP-binding protein Der [Vibrio brasiliensis LMG 20546]
 gi|323314211|gb|EGA67296.1| GTP-binding protein Der [Vibrio brasiliensis LMG 20546]
          Length = 494

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 105/257 (40%), Gaps = 34/257 (13%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           M  ++          ID   +  +    +    E ED+ +F  ++   D        S  
Sbjct: 140 MYQIAAAHGRGVTALIDLALNPFAEKLMEETSGEIEDLTDFIDEDEKLDY-------SEE 192

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ +   +     K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G
Sbjct: 193 EAEEEFKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDG 252

Query: 267 YLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP--- 317
               + DTAG+R    I    EK  + +T   VE+A++++L+ +     S +++S     
Sbjct: 253 REYVLIDTAGVRRRTRINETVEKFSVVKTLKAVEDANVVMLVIDARENISDQDLSLLGFA 312

Query: 318 --KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIK 359
                  +    K      D+     +E D           H IS+  G G+  L   ++
Sbjct: 313 LNAGRSIVIAVNKWDGLDMDVKEQVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQ 372

Query: 360 SILSNKFKKLPFSIPSH 376
               +   ++  S+ + 
Sbjct: 373 EAYKSATTRVGTSVLTR 389



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +    +               + +  K D   
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFMVDGRAGLTAADEAIASHLRKIEKPSMLVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELIN 356
                 +            ++  G G+  LI+
Sbjct: 125 ADAASAEFWQLGVENMYQIAAAHGRGVTALID 156


>gi|332880020|ref|ZP_08447704.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332682016|gb|EGJ54929.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 434

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 30/203 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  ++ + +  E   N  +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD 
Sbjct: 154 DLLDELVKNLPEKEQKE-EENLPRFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR    +    E   + R+   +E++D+ +L+ +     E 
Sbjct: 213 IDTRYNRFGFEFNLVDTAGIRRKSKVKEDLEFYSVMRSIRAIEHSDVCILMLDATRGFES 272

Query: 314 -------ISFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                  ++       + +  K DL                     +T+     +S+   
Sbjct: 273 QDANIFWLAQRNRKGIVILVNKWDLVEKENNTAKAYEAAIRKEIEPFTDVPIIFVSALNK 332

Query: 349 EGLEELINKIKSILSNKFKKLPF 371
           + + + I     + +N+ K++P 
Sbjct: 333 QRIYKAIETAVEVYNNRTKRIPT 355



 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L K+  AIV  + G TRD      D  G    + DT G +   
Sbjct: 5   VAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVEFSVIDTGGYLAGG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           DD  +KE  K+  L ++ AD I+ +  +             +          +  K    
Sbjct: 65  DDTFQKEIDKQVNLAIDEADAIIFMVNVEDGLTGMDESVAALLRKSKKPVFVVVNKVDSN 124

Query: 329 ---SDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               D +  Y   ++HL   SS  G G  +L++++   L  K +K   ++P
Sbjct: 125 NRRDDAHEFYALGFEHLFSISSINGSGTGDLLDELVKNLPEKEQKEEENLP 175


>gi|169831333|ref|YP_001717315.1| small GTP-binding protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|238688334|sp|B1I462|DER_DESAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169638177|gb|ACA59683.1| small GTP-binding protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 438

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 29/191 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              +I ++G  N GKSSL NA+  ++  IV+D+PGTTRD +      +G      DTAG+
Sbjct: 174 EPVRIAVVGRPNVGKSSLVNAILGEERVIVSDVPGTTRDAVDTLFRRDGREYVFIDTAGM 233

Query: 278 RETDDIVEK---EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
           R    I E      + R    +E +DL L++ +              ++       I + 
Sbjct: 234 RRKARIRESIEYYSVLRAKKALERSDLALVVLDFTDGVTNQDQRIAGLAEEAGKGTIIVV 293

Query: 327 TKSDL-------YSTYTEE-----------YDHLISSFTGEGLEELINKIKSILSNKFKK 368
            K DL        S Y EE               +S+ +G G+ ++++ ++S++    ++
Sbjct: 294 NKWDLAEGSGVSASRYQEEVRRELIFIGYAPVLCVSAVSGLGVPKILDTVESVMGEYRRQ 353

Query: 369 LPFSIPSHKRH 379
           +P S+ +    
Sbjct: 354 IPTSMLNRILQ 364



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 18/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+LFN +  +  A+V   PG TRD L  ++D  G    + DT GI  + 
Sbjct: 6   VAIVGRPNVGKSTLFNRILGRQAAVVDAEPGVTRDRLYQEVDWAGRHFILVDTGGIESQA 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            + +      +    +  A LIL + + N+           +    +   + +  K D +
Sbjct: 66  GEDMANRVFDQVRRAMAEAQLILYVLDGNAGLLEEDVQVAALLRRSSKPVLVVVNKVDDF 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKK 368
           S      D            S+  G  + +L++ + + +     +
Sbjct: 126 SRPLPLADFYRLGLGEPVPVSAAQGLNIGDLLDLVVAGMPAGADE 170


>gi|315300482|gb|EFU59711.1| ribosome-associated GTPase EngA [Escherichia coli MS 16-3]
          Length = 499

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTR+ + I ++ +G    + DTAG+R+
Sbjct: 212 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRESIYIPMERDGREYVLIDTAGVRK 271

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 272 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 331

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 332 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 391

Query: 373 IPSH 376
           + + 
Sbjct: 392 MLTR 395



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 4   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 63

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 64  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 123

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 124 LVANKTDGLDPDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV 167


>gi|194365440|ref|YP_002028050.1| GTP-binding protein EngA [Stenotrophomonas maltophilia R551-3]
 gi|238693498|sp|B4SSW8|DER_STRM5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|194348244|gb|ACF51367.1| small GTP-binding protein [Stenotrophomonas maltophilia R551-3]
          Length = 465

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 102/252 (40%), Gaps = 41/252 (16%)

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL-----------FL 199
           S  +      W+ KL+     +   +D ++E+ V++  ++   +++L            L
Sbjct: 96  SSAMDDEILAWLRKLSRPTLLLINKIDGTDEDSVRSEFARYGFSEMLTVSAAHRQGLDDL 155

Query: 200 KNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             ++   + +   GE + N     +I  +G  N GKS+L N +  ++  I +D+PGTTRD
Sbjct: 156 LEEVVQRLPEEGSGEELDNDPNRIRIAFVGRPNVGKSTLVNRILGEERMIASDVPGTTRD 215

Query: 257 VLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            + +DL+ +G   ++ DTAG+R     D++VEK  + +T   +E   + +L+ +      
Sbjct: 216 SIAVDLERDGREYRLIDTAGLRRRSRVDEVVEKFSVVKTMQSIEQCQVAVLMLDATEGVT 275

Query: 312 ------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI----------------SSFTGE 349
                            +    K D  + Y  E    +                S+  G 
Sbjct: 276 DQDATVLGAVLDAGRALVIAINKWDGLTEYQREQAETMLSLRLGFVPWAESVRISAKHGS 335

Query: 350 GLEELINKIKSI 361
           GL EL   +   
Sbjct: 336 GLRELFRAVHRA 347



 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 18/174 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G  N GKS++FNAL +   A+V D PG TRD       L+      + DT GI E 
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEDNHFLVVDTGGIAEE 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSD-- 330
           ++ +     ++       ADLIL + +          + +++ +      + +  K D  
Sbjct: 65  EEGLAGATTRQARAAAAEADLILFVVDARDGSSAMDDEILAWLRKLSRPTLLLINKIDGT 124

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                   ++ Y       +S+   +GL++L+ ++   L  +          ++
Sbjct: 125 DEDSVRSEFARYGFSEMLTVSAAHRQGLDDLLEEVVQRLPEEGSGEELDNDPNR 178


>gi|18310737|ref|NP_562671.1| GTP-binding protein EngA [Clostridium perfringens str. 13]
 gi|110798819|ref|YP_696441.1| GTP-binding protein EngA [Clostridium perfringens ATCC 13124]
 gi|110803315|ref|YP_699041.1| GTP-binding protein EngA [Clostridium perfringens SM101]
 gi|168207282|ref|ZP_02633287.1| putative GTP-binding protein Era [Clostridium perfringens E str.
           JGS1987]
 gi|168210612|ref|ZP_02636237.1| putative GTP-binding protein Era [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214232|ref|ZP_02639857.1| putative GTP-binding protein Era [Clostridium perfringens CPE str.
           F4969]
 gi|168217042|ref|ZP_02642667.1| putative GTP-binding protein Era [Clostridium perfringens NCTC
           8239]
 gi|169342731|ref|ZP_02863772.1| putative GTP-binding protein Era [Clostridium perfringens C str.
           JGS1495]
 gi|182625851|ref|ZP_02953617.1| putative GTP-binding protein Era [Clostridium perfringens D str.
           JGS1721]
 gi|26006720|sp|Q8XJK1|DER_CLOPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123148666|sp|Q0TPJ9|DER_CLOP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123341699|sp|Q0SS66|DER_CLOPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|18145418|dbj|BAB81461.1| probable GTP binding protein [Clostridium perfringens str. 13]
 gi|110673466|gb|ABG82453.1| ribosome-associated GTPase EngA [Clostridium perfringens ATCC
           13124]
 gi|110683816|gb|ABG87186.1| ribosome-associated GTPase EngA [Clostridium perfringens SM101]
 gi|169299237|gb|EDS81307.1| putative GTP-binding protein Era [Clostridium perfringens C str.
           JGS1495]
 gi|170661368|gb|EDT14051.1| putative GTP-binding protein Era [Clostridium perfringens E str.
           JGS1987]
 gi|170711316|gb|EDT23498.1| putative GTP-binding protein Era [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714259|gb|EDT26441.1| putative GTP-binding protein Era [Clostridium perfringens CPE str.
           F4969]
 gi|177908885|gb|EDT71377.1| putative GTP-binding protein Era [Clostridium perfringens D str.
           JGS1721]
 gi|182380862|gb|EDT78341.1| putative GTP-binding protein Era [Clostridium perfringens NCTC
           8239]
          Length = 438

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 81/204 (39%), Gaps = 11/204 (5%)

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
                +  M  +        ++K+  +     +   ++         S      +  + +
Sbjct: 99  AADQEVAQMLRKSKKPVVLVVNKIDRLALEENSYEFYNLGIGDPITISASQGLGLGDMLD 158

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           ++  + +     E      +I ++G  N GKSSL N L  ++  IV+++PGTTRD +   
Sbjct: 159 EVVKYFNDPSEDEEDDEYIRIAMIGKPNVGKSSLINRLLGEERVIVSNVPGTTRDSIDSY 218

Query: 262 LDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
           L+ E     + DTAG+R      + +E+  + RT+  +E AD+ +L+ +          K
Sbjct: 219 LETEDGKFILVDTAGLRRKSKVKEEIERYSVIRTYAAIEKADVAILVIDAEQGITEQDEK 278

Query: 319 --------NIDFIFIGTKSDLYST 334
                   N   + +  K DL   
Sbjct: 279 IIGYAHEMNKAIMVVVNKWDLIEK 302



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN LA K ++IV D PG TRD +  + +       + DT GI  E+
Sbjct: 6   VAMVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAESEWLNRKFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+ K+  ++  + +E AD+I+ + +             ++        + +  K D  
Sbjct: 66  SDIIVKQMRRQAQIAIEMADVIVFVVDGKEGLTAADQEVAQMLRKSKKPVVLVVNKIDRL 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSN 364
           +     Y+            S+  G GL ++++++    ++
Sbjct: 126 ALEENSYEFYNLGIGDPITISASQGLGLGDMLDEVVKYFND 166


>gi|154494318|ref|ZP_02033638.1| hypothetical protein PARMER_03672 [Parabacteroides merdae ATCC
           43184]
 gi|154085762|gb|EDN84807.1| hypothetical protein PARMER_03672 [Parabacteroides merdae ATCC
           43184]
          Length = 437

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 11/170 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I + +   K   +     +I I+G  NAGKSSL NA   +D  IVTDI GTTRD 
Sbjct: 154 DLLDKIVATLPDDKQEMLEEELPRIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G    + DTAGIR+   +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTKYNKFGLNFYLVDTAGIRKKGKVNEDLEYYSVIRSIRAIENSDVCVLMLDATRGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  +        +    K DL    +++      S   E L    +
Sbjct: 274 QDLNIFSLVQKNKKGLVVCVNKWDLVEDKSQKVIDTFMSAIRERLAPFTD 323



 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L +   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTQTRQAIVNEEAGTTRDRQYGKAEWTGKEFSLIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
             +DD+ E+E  K+  + +E AD+IL + ++        N    I        I +  K+
Sbjct: 62  INSDDVFEEEINKQVKVALEEADVILFVVDVLNGVTDLDNEVAAILRRAKKPVIVVANKA 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D   L+ +  E Y         IS+  G    +L++KI + L +  +++
Sbjct: 122 DNFELHPSSAEFYSFGLGDPFCISAINGSCTGDLLDKIVATLPDDKQEM 170


>gi|237737857|ref|ZP_04568338.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419737|gb|EEO34784.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817]
          Length = 440

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 88/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + ++  I +  + E   +  K+ I+G  NAGKSSL N LA ++  IV+DI GTTRD 
Sbjct: 155 DMLDMVTDMIKKIDIPEEEEDVLKLAIIGKPNAGKSSLVNRLAGEERTIVSDIAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++ +     I DTAGIR     ++ +E   + R    ++ AD+ LL+ +       
Sbjct: 215 IDTIVEFDEKKYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCLLMLDGKEGLSE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------------------SSFTG 348
                  I+  +    I +  K DL    +   + +                   S+ TG
Sbjct: 275 QDKRIAGIAAEELKPIIVVVNKWDLVDKKSNTMEKMREKLYAELPFLSYAPIEFVSALTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           +   +L+    +I     K++   I +
Sbjct: 335 QRTTKLLEIADTIFEEYNKRISTGILN 361



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 15/144 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    VAIV D+PG TRD L  + +  G    + DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDRVAIVDDMPGVTRDRLYRETEWNGTEFVVVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSD-L 331
           +D +  +  ++  + +  AD+IL + +    +N   E    I   KN   I    K D  
Sbjct: 65  NDFMMTKIKQQAEVAMNEADVILFVVDGKCGVNPLDEEIAYILRKKNKPIILCVNKIDNF 124

Query: 332 YSTYTEEYDHLISSFTGEGLEELI 355
                + YD         G E LI
Sbjct: 125 LEQQDDVYDFWA-----LGFEHLI 143


>gi|256847158|ref|ZP_05552604.1| ribosome-associated GTPase EngA [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715822|gb|EEU30797.1| ribosome-associated GTPase EngA [Lactobacillus coleohominis
           101-4-CHN]
          Length = 437

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 18/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 7   VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYTHAEWLGKNFNLIDTGGIDMSD 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +  +  ++  + ++ AD+I+L+ ++ +          ++ +  N   +    K D   
Sbjct: 67  QPLTTQIREQAEVAIDEADVIVLVVDVQNGITDADEKVAQLLYRSNKPVVLAVNKVDNPE 126

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINK-IKSILSNKFKKLPFSI 373
             ++ YD           +SS  G GL +L++  IK+       +   SI
Sbjct: 127 RRSDIYDFYSLGLGEPYPVSSVHGIGLGDLLDAVIKNFPDTADNQKDDSI 176



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 11/128 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  +  ++G  N GKSSL NA+  +   IV+DI GTTRD +      +     + DTAGI
Sbjct: 174 DSIRFSLIGRPNVGKSSLVNAILGQQRVIVSDIAGTTRDAINTQFVADHRKFTMVDTAGI 233

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
           ++   +    E+  + R+   ++++D++L++   +             +       I + 
Sbjct: 234 KKKGKLYENTERYALMRSMKAIDDSDVVLVVLNADEGIRDLDKHIAGYAHEAGKGVIIVV 293

Query: 327 TKSDLYST 334
            K DL   
Sbjct: 294 NKWDLIKN 301


>gi|32455227|gb|AAP83329.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Enteritidis]
          Length = 490

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|255533659|ref|YP_003094031.1| small GTP-binding protein [Pedobacter heparinus DSM 2366]
 gi|255346643|gb|ACU05969.1| small GTP-binding protein [Pedobacter heparinus DSM 2366]
          Length = 433

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 31/204 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H       E      KI I+G  N GKSSL NAL  K+  IVT I GTTRD 
Sbjct: 154 DLLDEVIKHFEDVPEEE--NALPKITIVGRPNVGKSSLINALMGKERNIVTPIAGTTRDS 211

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKE- 313
           + I  +  G+     DTAG+R+   +   +E   + RT   +E AD+++L+ +     E 
Sbjct: 212 IHIHYNQFGHEFMFIDTAGLRKKTKVKENIEFYSVMRTIKALEEADVVILMIDAMEGLES 271

Query: 314 -------ISFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                  ++       + +  K DL                     +T+     IS+   
Sbjct: 272 QDVNIFHLAEKNKKGIVILVNKWDLVEKNSKTVNIFEDQIRQKLQPFTDIPIIFISALNK 331

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           + + + +     +  N+ KK+P S
Sbjct: 332 QRIFQAVETALDVFKNRGKKIPTS 355



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           I I+G  N GKS+LFN L +   AIV D  G TRD      +       + DT G +  +
Sbjct: 5   IAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYGVAEWTDKQFTVIDTGGYVANS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD-- 330
           +D+ E    ++  + +E A ++L + ++        +   ++          +  K D  
Sbjct: 65  EDVFEAAIREQVIIAIEEATVLLFMVDVTTGITDLDDEIAQLLRRSKKPVFIVVNKVDNT 124

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  ++  +     H ISS TG G  +L++++     +  ++   
Sbjct: 125 QLQNDAAVFYGFGLGEIHPISSMTGSGTGDLLDEVIKHFEDVPEEENA 172


>gi|238916971|ref|YP_002930488.1| GTP-binding protein [Eubacterium eligens ATCC 27750]
 gi|259645875|sp|C4Z0C8|DER_EUBE2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238872331|gb|ACR72041.1| GTP-binding protein [Eubacterium eligens ATCC 27750]
          Length = 441

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 91/224 (40%), Gaps = 26/224 (11%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++ SH  +G   +   +  K+ I+G  N GKSS+ N L  K+  IV+DI GTTRD 
Sbjct: 156 EVLDEVVSHFPEGSDTDKEDDRPKVAIIGKPNVGKSSIINKLVGKNRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +   G      DTAG+R    I    E+  I RT   VE AD+ +L+ +       
Sbjct: 216 IDTAIKYNGKEYVFIDTAGLRRKSKIKEDLERFSIIRTVAAVERADIAILVIDATEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS-ILSNK 365
                  I+  +    I    K D                  + + E  NKIK  +    
Sbjct: 276 QDAKIAGIAHERGKGIIIAVNKWD------------DIEKNDKTIYEFTNKIKDTLAFMS 323

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIAE 407
           + ++ F      + L  + + V ++  A       G+  +I+ E
Sbjct: 324 YAEIIFVSAKTGQRLNKIYELVDHIVDAQTMRIPTGVLNEILTE 367



 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 19/163 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN+L  + ++IV D PG TRD +  ++    +   + DT GI  +T
Sbjct: 6   VAVVGRPNVGKSTLFNSLCGQQISIVKDTPGVTRDRIYAEVSWLNHNFTLIDTGGIEPDT 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + +E AD+I+ + ++            ++    +   I +  K D +
Sbjct: 66  GDIILSQMREQAEIAIETADVIIFMTDVKQGLVDSDSKVADMLRRSHKPVILVVNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNK 365
                +              IS+    G  E+++++ S     
Sbjct: 126 EKMMPDVYEFYNLGIGEPFPISAVNKLGFGEVLDEVVSHFPEG 168


>gi|125973539|ref|YP_001037449.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405]
 gi|256003357|ref|ZP_05428348.1| small GTP-binding protein [Clostridium thermocellum DSM 2360]
 gi|281417743|ref|ZP_06248763.1| ribosome-associated GTPase EngA [Clostridium thermocellum JW20]
 gi|166224331|sp|A3DE77|DER_CLOTH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|125713764|gb|ABN52256.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405]
 gi|255992647|gb|EEU02738.1| small GTP-binding protein [Clostridium thermocellum DSM 2360]
 gi|281409145|gb|EFB39403.1| ribosome-associated GTPase EngA [Clostridium thermocellum JW20]
 gi|316940220|gb|ADU74254.1| ribosome-associated GTPase EngA [Clostridium thermocellum DSM 1313]
          Length = 440

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++I  +  +    +   +  K+ ++G  N GKSSL N +  ++  IV+DIPGTTRD 
Sbjct: 156 DLLDEIFKYFPEEDAEDYDEDVIKVAVVGKPNVGKSSLINRILGEERVIVSDIPGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++ E       DTAGIR   + ++ +EK  I R++  +E AD+ L+L +       
Sbjct: 216 IDTFVENEHGKFVFIDTAGIRRQSKINEKIEKYSIIRSWTAIERADVCLILIDAKEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYT---EEY---------------DHLISSFTG 348
                   +  +    I +  K DL    T   EEY                  IS+ TG
Sbjct: 276 QDTKIAGYAHEQGKASIIVVNKWDLIEKQTGTLEEYRRTVHEKLGFMLYAPVIFISALTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + ++ +   IK +      ++   + +
Sbjct: 336 QRVDRIYGLIKHVADQAAMRISTGVLN 362



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 19/156 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+ FN L  K ++IV D PG TRD +  +++       + DT GI   +
Sbjct: 6   VAVVGRPNVGKSTFFNYLVGKRISIVEDTPGVTRDRIYAEVEWRNKKFTLIDTGGIEPYS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFI--GTKSDLY 332
           +D + ++  ++  + +E AD+I+ + ++      + K+  +  +      I    K D  
Sbjct: 66  EDKIMQQMKRQAEIAIETADIIIFMVDVKDGVTASDKEVATLLRKTKKPVIVAVNKVDKI 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKI 358
                ++              SS  G G+ +L+++I
Sbjct: 126 GELPADFYEFYNLGFGELMAISSIHGLGMGDLLDEI 161


>gi|62181086|ref|YP_217503.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224582944|ref|YP_002636742.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|81309623|sp|Q57LJ0|DER_SALCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783165|sp|C0PYN4|DER_SALPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|62128719|gb|AAX66422.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224467471|gb|ACN45301.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322715573|gb|EFZ07144.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 490

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|16761434|ref|NP_457051.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140869|ref|NP_804211.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213161952|ref|ZP_03347662.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425335|ref|ZP_03358085.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213609480|ref|ZP_03369306.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213861384|ref|ZP_03385854.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289825430|ref|ZP_06544667.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|26006725|sp|Q8Z4P6|DER_SALTI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|25328266|pir||AF0821 probable GTP-binding protein STY2764 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503734|emb|CAD02722.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136494|gb|AAO68060.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 490

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|307132056|ref|YP_003884072.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Dickeya dadantii
           3937]
 gi|306529585|gb|ADM99515.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Dickeya dadantii
           3937]
          Length = 495

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 208 IKLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDGRDYVLIDTAGVRK 267

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 268 RGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 327

Query: 329 SD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D     +     E  D           H IS+  G G+  L   +        +++  +
Sbjct: 328 WDGLTQEIKDQVKETLDLRLGFIDFARIHFISALHGSGVGNLFESVTEAYDCSTRRVGTA 387

Query: 373 IPSH 376
           + + 
Sbjct: 388 MLTR 391



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    I DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGIDGNE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L L +             +    +  D   +  K D   
Sbjct: 65  DGVETRMAEQSLLAIEEADIVLFLVDARDGLMPADHAIAQHLRMREKDTFLVANKVDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358
             T   D         H I++  G G+  L+ K+
Sbjct: 125 IDTGIADFYSLGLGEVHPIAASHGRGVTSLLEKV 158


>gi|207857927|ref|YP_002244578.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|238690463|sp|B5R578|DER_SALEP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|206709730|emb|CAR34082.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 490

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|302670901|ref|YP_003830861.1| GTP-binding protein [Butyrivibrio proteoclasticus B316]
 gi|302395374|gb|ADL34279.1| GTP-binding protein [Butyrivibrio proteoclasticus B316]
          Length = 442

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 64/148 (43%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L  ++ SH S+    E   +  KI I+G  N GKSS+ N L  ++  IV+DI GTTRD 
Sbjct: 157 DLLEEVVSHFSKSSTDEEEDDSVKIAIIGKPNVGKSSIINKLIGENRLIVSDIAGTTRDA 216

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +   G      DTAG+R  +   D +E   I RT   VE AD+ +L+         
Sbjct: 217 IDTPVKYNGKKYTFIDTAGLRRKNKIKDELEHYMIVRTVGAVERADVAILVINAEDGVTE 276

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                  I+       I    K DL   
Sbjct: 277 QDAKIAGIAHESGKAVIIAVNKWDLIEK 304



 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFNALA   +AIV D PG TRD +  D++   +   + DT GI  ++
Sbjct: 7   VAVVGRPNVGKSTLFNALAGSRIAIVQDTPGVTRDRIYQDVEWLNHSFTLIDTGGIEPDS 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  +   +  + ++ AD+I+ + ++            ++        +    K D Y
Sbjct: 67  KDIILAQMRDQAQIAIDTADVIIFMVDVKQGLTDSDSKVADMLRKSGKPIVLCVNKVDNY 126

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +  + +              IS+   +G+ +L+ ++ S  S         
Sbjct: 127 NRDSMDVYEFYNLGIGEPFPISAVNKQGIGDLLEEVVSHFSKSSTDEEED 176


>gi|90021085|ref|YP_526912.1| GTP-binding protein EngA [Saccharophagus degradans 2-40]
 gi|123396308|sp|Q21KS9|DER_SACD2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|89950685|gb|ABD80700.1| Small GTP-binding protein domain [Saccharophagus degradans 2-40]
          Length = 471

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 112/278 (40%), Gaps = 30/278 (10%)

Query: 127 EAESLADLISSETEM-QRRLSMEGMSGELSSLYGQWIDKLTHI-RSFIEADLDFSEEEDV 184
           EA+ +A ++ +   +    + +       +       +K+  +  S + A        DV
Sbjct: 81  EADMVAFIVDARVGLTAADMQIAQHLRTCNKPIFLLANKVDGVNESIVCAPFFELGLGDV 140

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKD 243
              ++    N    L   + +   + +  E  +  G K+ I+G  N GKS+L N +  +D
Sbjct: 141 IGIAAAHGRNINTMLDTVLENVEPEAEASEEDKAKGIKLAIVGRPNVGKSTLVNRMLGED 200

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENAD 300
             +V D+PGTTRD + I+ + +G    I DTAG+R   +I    EK  I +T   +++A+
Sbjct: 201 RVVVYDMPGTTRDSIYIEYERDGKAYTIIDTAGVRRRKNIKLSVEKFSIVKTLQAIDDAN 260

Query: 301 LILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLYSTYTEEYD------------ 340
           +++L+ +       +++             +    K D      + Y             
Sbjct: 261 VVILVMDAQEGIVDQDLHLMGHVIDSGRALVVALNKWDNLDNDHKSYVKTELSRRLQFVD 320

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               H IS+  G G+ +L   +    S+  +KL  +  
Sbjct: 321 FADLHFISALHGTGVGDLYKSVHKAYSSATEKLNTNFL 358



 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   AIV +  G TRD    +         + DT GI   +
Sbjct: 5   LALVGRPNVGKSTLFNRLTRSRDAIVANFSGLTRDRQYGEATHGDKRFIVVDTGGISGEE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD 330
           + ++     ++   +E AD++  + +     +  ++   +     N     +  K D
Sbjct: 65  EGIDSYMAGQSLQAIEEADMVAFIVDARVGLTAADMQIAQHLRTCNKPIFLLANKVD 121


>gi|281425284|ref|ZP_06256197.1| hypothetical protein HMPREF0971_02256 [Prevotella oris F0302]
 gi|299141484|ref|ZP_07034620.1| ribosome-associated GTPase EngA [Prevotella oris C735]
 gi|281400577|gb|EFB31408.1| ribosome-associated GTPase EngA [Prevotella oris F0302]
 gi|298576820|gb|EFI48690.1| ribosome-associated GTPase EngA [Prevotella oris C735]
          Length = 437

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 18/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD              + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCSWNAKEFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E    ++  +  E ADL+L L ++ +           I     +  I +  K D  
Sbjct: 65  DDIFEDAIRRQVLVATEEADLVLFLVDVTTGVTDWDEDVATILRRAKLPVILVANKVDNS 124

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           S Y E  +           IS+ TG G  +L++ I   L  +  +        
Sbjct: 125 SEYYEAAEFYKLGIGEPQCISAATGGGTGDLLDMIVDKLPQENPETIEDEIPR 177



 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 11/170 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I   + Q     I     +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DLLDMIVDKLPQENPETIEDEIPRFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    D  G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRFDKFGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRAIENSDVCILMLDATRGVEA 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  +    N   + +  K DL    +++      +     +   ++
Sbjct: 274 QDMNIFQLIQKNNKSLVVVVNKWDLVEEKSQKVIDTFEAAIRNRMAPFVD 323


>gi|271501567|ref|YP_003334593.1| ribosome-associated GTPase EngA [Dickeya dadantii Ech586]
 gi|270345122|gb|ACZ77887.1| ribosome-associated GTPase EngA [Dickeya dadantii Ech586]
          Length = 498

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 211 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGRDYVLIDTAGVRK 270

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 271 RGKITDTVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 330

Query: 329 SD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D     +     E  D           H IS+  G G+  L   +        +++  +
Sbjct: 331 WDGLTQEVKDQVKETLDLRLGFIDFARIHFISALHGSGVGNLFESVNEAYECSTRRVGTA 390

Query: 373 IPSH 376
           + + 
Sbjct: 391 MLTR 394



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 27/200 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L L +             +    +  D   +  K D   
Sbjct: 65  DGVETRMAEQSLLAIEEADIVLFLVDARDGLMPADYAIAQHLRSREKDTFLVANKVDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             T   D           I++  G G+  L+ K+          LPF+    +       
Sbjct: 125 IDTGIADFYSLGLGDVYPIAASHGRGVTSLLEKVL---------LPFATEPLQEARELTE 175

Query: 385 QTVRYLEMA-SLNEKDCGLD 403
           +       A  L E D G++
Sbjct: 176 EEANAAYWAEQLGEGDDGIE 195


>gi|288801362|ref|ZP_06406816.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288331745|gb|EFC70229.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 437

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 95/217 (43%), Gaps = 15/217 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L +++ +++   ++ E + +G  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD
Sbjct: 154 DLLDEVINNLK-AEVDESLEDGIPRFAVVGRPNAGKSSIINAFMGEDRNIVTEIAGTTRD 212

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
            +    D  G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E
Sbjct: 213 SIYTRFDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRAIENSDVCILMIDATRGIE 272

Query: 314 --------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                   +    N   + +  K DL     ++      +   + +    +      S  
Sbjct: 273 TQDMNIFQLIQRNNKSLVVVVNKWDLVPDKDQKVITTFETAIRKRMAPFTDFPIIFASAL 332

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
            K+  F +    + +Y   +   ++  + LNE    L
Sbjct: 333 TKQRIFKVLETAKQVYLNRKA--HVGTSKLNEVMLPL 367



 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L K   AIV+D  GTTRD     +D  G    I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTKTRSAIVSDTAGTTRDRQYGKVDWNGREFSIVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +DI E    ++  +  E A+L+L + ++ +          +I     +  I +  K D  
Sbjct: 65  EDIFEDAIRRQVLIATEEANLVLFVVDVQTGLTDWDEDVAQILRKSKVPIILVVNKVDKN 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKF-KKLPFSIP 374
               +  +           ISS TG G  +L++++ + L  +  + L   IP
Sbjct: 125 EQQYDAAEFYSLGLGEPFCISSSTGSGTGDLLDEVINNLKAEVDESLEDGIP 176


>gi|16765839|ref|NP_461454.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56412602|ref|YP_149677.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|167549461|ref|ZP_02343220.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167991827|ref|ZP_02572926.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168261443|ref|ZP_02683416.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168466731|ref|ZP_02700585.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194446079|ref|YP_002041777.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|197264629|ref|ZP_03164703.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197361537|ref|YP_002141173.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|238912639|ref|ZP_04656476.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|17865704|sp|Q9XCI8|DER_SALTY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|81821610|sp|Q5PNI6|DER_SALPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238689919|sp|B5BAY9|DER_SALPK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238693574|sp|B4T0P5|DER_SALNS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|16421063|gb|AAL21413.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56126859|gb|AAV76365.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194404742|gb|ACF64964.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|195630729|gb|EDX49321.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093013|emb|CAR58446.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197242884|gb|EDY25504.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205325405|gb|EDZ13244.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205329876|gb|EDZ16640.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205349650|gb|EDZ36281.1| ribosome-associated GTPase EngA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|261247715|emb|CBG25543.1| GTP-binding protein engA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994635|gb|ACY89520.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159068|emb|CBW18582.1| GTP-binding protein engA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913506|dbj|BAJ37480.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320087014|emb|CBY96783.1| GTP-binding protein engA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222780|gb|EFX47851.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613736|gb|EFY10675.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619521|gb|EFY16397.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625026|gb|EFY21855.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629531|gb|EFY26307.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634038|gb|EFY30775.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635524|gb|EFY32235.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639800|gb|EFY36479.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644422|gb|EFY40963.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648567|gb|EFY45016.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655213|gb|EFY51522.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658260|gb|EFY54526.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664261|gb|EFY60458.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669428|gb|EFY65577.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673155|gb|EFY69261.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676547|gb|EFY72615.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683297|gb|EFY79311.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685817|gb|EFY81810.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323130847|gb|ADX18277.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194760|gb|EFZ79948.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199552|gb|EFZ84643.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204673|gb|EFZ89671.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208121|gb|EFZ93066.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210155|gb|EFZ95056.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217023|gb|EGA01745.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221821|gb|EGA06225.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225000|gb|EGA09255.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229289|gb|EGA13413.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235396|gb|EGA19480.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237418|gb|EGA21481.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245172|gb|EGA29173.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248875|gb|EGA32801.1| GTP-binding protein Der [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253162|gb|EGA36994.1| GTP-binding protein Der [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255396|gb|EGA39164.1| GTP-binding protein Der [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263529|gb|EGA47056.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266356|gb|EGA49844.1| GTP-binding protein Der [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269813|gb|EGA53263.1| GTP-binding protein Der [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|332989446|gb|AEF08429.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 490

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|311278558|ref|YP_003940789.1| ribosome-associated GTPase EngA [Enterobacter cloacae SCF1]
 gi|308747753|gb|ADO47505.1| ribosome-associated GTPase EngA [Enterobacter cloacae SCF1]
          Length = 492

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 205 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 264

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D+VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 265 RGKITDVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 324

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 325 WDGLSQEVKEQVKETLDYRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 384

Query: 373 IPSH 376
           + + 
Sbjct: 385 MLTR 388



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + VE    +++ L +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRAREKPTFLVANKTDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVSDFWSLGLGEIYPIAASHGRGVTSLLEHV 158


>gi|46199327|ref|YP_004994.1| GTP-binding protein EngA [Thermus thermophilus HB27]
 gi|46196952|gb|AAS81367.1| GTP-binding protein [Thermus thermophilus HB27]
          Length = 431

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 70/124 (56%), Gaps = 8/124 (6%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  NAGKSSL NA+  ++  IV++ PGTTRD + ++    G    + DTAGIR
Sbjct: 173 GIRLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDAIDVEFFFGGQRFVLVDTAGIR 232

Query: 279 ETDD-IVEKEGIKRTFLEVENADLILLLKE---INSKK----EISFPKNIDFIFIGTKSD 330
           +  + +VE+  I+R+   ++ AD++LL+ +   +  ++      +  +    + + TK D
Sbjct: 233 KRPESLVEELAIRRSLRAMDEADVVLLVVDPFQVGDRELKLANEALDRGKPVLLVITKWD 292

Query: 331 LYST 334
           L   
Sbjct: 293 LVDK 296



 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 88/206 (42%), Gaps = 22/206 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+VI+G  N GKSSLFN L KK  A+V D+PG TRD+    ++ +     + DT G+  +
Sbjct: 3   KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGL-WS 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D  EK+  ++    +E+A+++L   +  ++         E    K    I + TK D  
Sbjct: 62  GDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                L   Y   +      SS    GLEEL+  I   L  +  +    +   +  +   
Sbjct: 122 KHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERLPVRQIETEPEVAGIRLAIVGR 181

Query: 384 SQT-VRYLEMASLNEKDCGLDIIAEN 408
                  L  A L E+     I++E 
Sbjct: 182 PNAGKSSLLNAILGEERV---IVSEE 204


>gi|326624338|gb|EGE30683.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 504

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 217 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 276

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 277 RGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 336

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 337 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 396

Query: 373 IPSH 376
           + + 
Sbjct: 397 MLTR 400



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 17/171 (9%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
             +S     E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++
Sbjct: 2   RALSDDFFNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEV 61

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-- 319
           EG      DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+  
Sbjct: 62  EGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLR 121

Query: 320 ---IDFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
                   +  K+D         D           I++  G G+  L+  +
Sbjct: 122 SREKPTFLVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 172


>gi|229496957|ref|ZP_04390662.1| ribosome-associated GTPase EngA [Porphyromonas endodontalis ATCC
           35406]
 gi|229316059|gb|EEN81987.1| ribosome-associated GTPase EngA [Porphyromonas endodontalis ATCC
           35406]
          Length = 436

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L     AIVT+I GTTRD      +  G+   I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGSRQAIVTEISGTTRDRQYGHTNWTGHEFSIVDTGGWVSGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           +D+ E E  K+  + +E AD+IL + ++             +        + +  K+D +
Sbjct: 65  EDVFESEINKQVQIAIEEADVILFVVDVMAGMTDLDREVAGLLRRAKKPILLVANKADTF 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
               +  +           IS+  G G  +L++ I + L  + ++ 
Sbjct: 125 EIGYQSAEFYALGLGDPYAISAINGSGTGDLLDAIVNSLPEQHERE 170



 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 11/154 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I + + +    E  +   +  ++G  NAGKSSL NA   ++  IVT++ GTTRD 
Sbjct: 154 DLLDAIVNSLPEQHERETEKELPRFAVVGRPNAGKSSLINAFIGEERNIVTNVAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +  + +  G+   + DTAGIR+   +    E   + R+   +EN+D+ + + ++    E 
Sbjct: 214 IYTEYNKFGFSFYLVDTAGIRKRGKVQEDLEYYSVIRSIRAIENSDICIAMIDVTRGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYD 340
                  +    +   +    K DL    T E  
Sbjct: 274 QDVNILSLVMRNSKGLVVCVNKWDLVENKTNEAI 307


>gi|161612723|ref|YP_001586688.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|189037158|sp|A9N205|DER_SALPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|161362087|gb|ABX65855.1| hypothetical protein SPAB_00422 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 490

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|304382194|ref|ZP_07364702.1| ribosome-associated GTPase EngA [Prevotella marshii DSM 16973]
 gi|304336659|gb|EFM02887.1| ribosome-associated GTPase EngA [Prevotella marshii DSM 16973]
          Length = 437

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L K   AIV+D  GTTRD      +  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTKSRRAIVSDEAGTTRDRQYGKCEWNGREFSVVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLY 332
           DDI E    K+  +  E ADL+L L +I            +I     +  I +  K+D  
Sbjct: 65  DDIFEDAIRKQVIVATEEADLVLFLVDITNGLTDWDEDVAKILRRAKLPVILVANKADSN 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINK-IKSILSNKFKKLPFSIP 374
               +  +         + IS+ TG G  +L++  ++ + +++   +   IP
Sbjct: 125 EQIYDAAEFYRLGLGDPYCISAATGSGTGDLLDFVLQKMPASETNDIEDGIP 176



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 11/170 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   +   +  +I     +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DLLDFVLQKMPASETNDIEDGIPRFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    D  G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRAIENSDVCILMLDATRGIEA 273

Query: 315 SFPKNIDFI--------FIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                   I         +  K DL      +      +   E +    +
Sbjct: 274 QDMNIFQLIQKNSKSLVVVVNKWDLVENKDTKVIKTFENAIRERMAPFTD 323


>gi|119944927|ref|YP_942607.1| GTP-binding protein EngA [Psychromonas ingrahamii 37]
 gi|166225845|sp|A1SU43|DER_PSYIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|119863531|gb|ABM03008.1| small GTP-binding protein [Psychromonas ingrahamii 37]
          Length = 489

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 113/271 (41%), Gaps = 34/271 (12%)

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           D + +++      ++      L  +Y     +   +R  IE  LD    +DV+       
Sbjct: 121 DGVDADSVCAEFYAL-----GLGEVYHIAAAQGKGVRQMIEIALD-GFFDDVEQEDDFSD 174

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           L   L    +  + + + +   +     K+ ++G  N GKS+L N +  ++  +V D+PG
Sbjct: 175 LETGLEFVEEDEALLLK-EQERLAALPIKLALIGRPNVGKSTLTNRILGEERVLVYDLPG 233

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN 309
           TTRD + I +  +     + DTAG+R+    ++ VEK  + +T   +E+ +++LL+ +  
Sbjct: 234 TTRDSIYIPMSRDDREYILIDTAGVRKRKKVNETVEKFSVIKTLQAIEDCNVVLLIIDAR 293

Query: 310 ---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEEY----------------DHLISS 345
              S +++S            +    K D  + Y +E                  H IS+
Sbjct: 294 DGISDQDLSLLGFTLNAGRSLVIAVNKWDGMTEYDKERVKSELDRRLGFIDFAKIHFISA 353

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             G G+  L   ++    +  K++  SI + 
Sbjct: 354 LHGTGVGHLYESVEEAYDSSTKRISTSILTR 384



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 79/202 (39%), Gaps = 18/202 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       ++ +   + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKIDEHEFIVIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYS 333
           + ++     ++ L ++ AD +L L +  +   I+          ++     +  K+D   
Sbjct: 65  EGIDALMAGQSLLAIDEADAVLFLVDARAGMTIADEAIADHLRKQDKKVFVVANKTDGVD 124

Query: 334 ---------TYTEEYDHLISSFTGEGLEELIN-KIKSILSNKFKKLPFSIPSHKRHLYHL 383
                           + I++  G+G+ ++I   +     +  ++  FS           
Sbjct: 125 ADSVCAEFYALGLGEVYHIAAAQGKGVRQMIEIALDGFFDDVEQEDDFSDLETGLEFVEE 184

Query: 384 SQTVRYLEMASLNEKDCGLDII 405
            + +   E   L      L +I
Sbjct: 185 DEALLLKEQERLAALPIKLALI 206


>gi|167031915|ref|YP_001667146.1| GTP-binding protein EngA [Pseudomonas putida GB-1]
 gi|189037155|sp|B0KPJ1|DER_PSEPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166858403|gb|ABY96810.1| small GTP-binding protein [Pseudomonas putida GB-1]
          Length = 487

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 32/204 (15%)

Query: 201 NDISSHISQGKLGEII-----RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
             +   +++G+    I     ++G KI I+G  N GKS+L N +  ++  +V D PGTTR
Sbjct: 169 EALDQEVAEGEEAVRIPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDEPGTTR 228

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK- 311
           D + I  + +G      DTAG+R+   I    EK  + +T   +++A++++ + +     
Sbjct: 229 DSIYIPFERDGEKYTFIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGV 288

Query: 312 -------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTG 348
                     +       +    K D        Y                 H IS+  G
Sbjct: 289 VDHDLNLLGFALEAGRAIVIALNKWDGMEPGERAYVKTELERRLFFVDFADIHFISALHG 348

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
            G+  L   +++   +   + P S
Sbjct: 349 TGVGNLYKSVQAAFKSAVTRWPTS 372



 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L K   AIV D+ G TRD    D   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDATWQGRSFILIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ + +E AD +L L +  +          E    +N   I +  K D
Sbjct: 65  VGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKSAILVANKID 121


>gi|104773911|ref|YP_618891.1| GTP-binding protein EngA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116513918|ref|YP_812824.1| GTP-binding protein EngA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|37999708|sp|Q8KH12|DER_LACDA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|122275312|sp|Q04AY6|DER_LACDB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|21633222|gb|AAM22484.1| conserved hypothetical GTP-binding protein [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103422992|emb|CAI97674.1| Putative GTP-binding protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093233|gb|ABJ58386.1| Predicted GTPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325125585|gb|ADY84915.1| Probable GTP-binding protein engA [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 435

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + VAIV D PG TRD         G+   I DT GI   D
Sbjct: 6   VAIVGQPNVGKSTLFNRIINERVAIVEDRPGVTRDRNYARASWMGHQFSIIDTGGITWED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +++E   +  + +E AD+I++L + +            + +  +   +    K+D   
Sbjct: 66  STIDEEIRAQAEIAIEEADVIVMLADASQGVTSLDERIAHLLYRADKPVLLAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             T+ YD           +S   G G+ +L++++    S   +K    + 
Sbjct: 126 QRTDIYDFYSLGLGDPIPVSGSHGTGIGDLLDEVVKNFSPDAEKTEEGVI 175



 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 102/292 (34%), Gaps = 47/292 (16%)

Query: 131 LADLISSETEMQRRLS--------MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           + + I ++ E+    +               L       + +            D  E+ 
Sbjct: 68  IDEEIRAQAEIAIEEADVIVMLADASQGVTSLDERIAHLLYRADKPVLLAVNKADNPEQR 127

Query: 183 DVQNFSSKEVLNDILFLKND----ISSHISQ-----GKLGEIIRNG-YKIVILGHSNAGK 232
                     L D + +       I   + +         E    G     ++G  N GK
Sbjct: 128 TDIYDFYSLGLGDPIPVSGSHGTGIGDLLDEVVKNFSPDAEKTEEGVISFSVIGRPNVGK 187

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGI 289
           SS+ N L  ++  IV +  GTTRD +      +G   ++ DTAGIR    +    EK  +
Sbjct: 188 SSIVNRLLGEERVIVANEEGTTRDAIDTPFVKDGTKFRVVDTAGIRRRGKVYEKTEKYSV 247

Query: 290 KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST------- 334
            R    +E +D+ +L+ + ++            +    +  I    K DL          
Sbjct: 248 MRAMSAMERSDVAILVLDASTGIREQDKHVAGYAHEAGLGMIIAVNKWDLPKKDSSSGKD 307

Query: 335 ----YTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                 EE+ +        +S+ TG+ +++L   +K +  NK +++  S+ +
Sbjct: 308 FEAVIREEFSYLDYAPIVFVSAKTGKNIDQLPKMVKEVYENKNQRIQSSVLN 359


>gi|238021706|ref|ZP_04602132.1| hypothetical protein GCWU000324_01609 [Kingella oralis ATCC 51147]
 gi|237866320|gb|EEP67362.1| hypothetical protein GCWU000324_01609 [Kingella oralis ATCC 51147]
          Length = 489

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 105/292 (35%), Gaps = 36/292 (12%)

Query: 127 EAESLADLISSET---EMQRRLS--MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           EA+++  L+ + T      + ++  +      +     +       + +    +L   E 
Sbjct: 82  EADAVVFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNKGEGGRRDVLAAEFYELALGE- 140

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
               +  S    + + +L  +I  +       +         ++G  N GKS+L NA+  
Sbjct: 141 ---PHVISGAHGDGVYYLIEEILENFPDADETQPENKHPVFAVIGRPNVGKSTLVNAILG 197

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVEN 298
           ++  I  D+ GTTRD + ID + EG    I DTAG+R   + D+ VEK  + +    +E 
Sbjct: 198 EERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAIEA 257

Query: 299 ADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---------- 340
           A++ +L+ +               +       +    K D  S                 
Sbjct: 258 ANIAVLVLDAQQDIADQDATIAGFALEAGRALVIAVNKWDGISEERRNDIKRDIARKLYF 317

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
                 H IS+    G++ L + I++  +  F  +P    +         Q 
Sbjct: 318 LDFAKFHYISALKERGIDGLFDSIQAAYNAAFINMPTPKITRVLQSAVERQA 369



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVVDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -SDLYSTYTEEY----DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             D+ +    E      H+IS   G+G+  LI +I     +  +  P +
Sbjct: 125 RRDVLAAEFYELALGEPHVISGAHGDGVYYLIEEILENFPDADETQPEN 173


>gi|73856514|gb|AAZ89221.1| putative GTP-binding factor [Shigella sonnei Ss046]
          Length = 503

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 216 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 275

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+ ++++L+ +     S +++S            + +  K
Sbjct: 276 RGKITDAVEKFSVIKTLQAIEDTNVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 335

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 336 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 395

Query: 373 IPSH 376
           + + 
Sbjct: 396 MLTR 399



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 8   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 67

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 68  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 127

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+ ++
Sbjct: 128 LVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLERV 171


>gi|77460818|ref|YP_350325.1| GTP-binding protein EngA [Pseudomonas fluorescens Pf0-1]
 gi|123603396|sp|Q3K7C0|DER_PSEPF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|77384821|gb|ABA76334.1| GTP-binding protein [Pseudomonas fluorescens Pf0-1]
          Length = 490

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 87/226 (38%), Gaps = 35/226 (15%)

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A  DF  ++D      +E +         I         G   ++G KI I+G  N GKS
Sbjct: 158 ALSDFPRDDDEPAEGEEEEVVAEGEEAKRI--------PGPSEKDGIKIAIIGRPNVGKS 209

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIK 290
           +L N +  +D  IV D PGTTRD + I  +       + DTAG+R+   I    EK  + 
Sbjct: 210 TLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNDEKYTLIDTAGVRKRGKIHEEVEKFSVV 269

Query: 291 RTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY--- 339
           +T   +++A++++ + +               +       +    K D  +    ++   
Sbjct: 270 KTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIAINKWDGMTPSERDFVKV 329

Query: 340 -------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                         H IS+  G G+  L   +++   +   + P S
Sbjct: 330 ELQRRLFFVDFADIHFISALHGTGVGNLYASVQNSFKSAVTRWPTS 375



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             ++++  +++ L +E AD++L L +  +          E    +N     +  K D   
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFLVDAKAGFTAADQMIAEHLRKRNKRSHVVANKVDNID 124

Query: 334 TYTEEYDH---------LISSFTGEGLEELINK 357
                 +           I+   G G+ +L+  
Sbjct: 125 PEMARAEFAPLGMGHAIPIAGAHGRGITQLLEA 157


>gi|326560782|gb|EGE11149.1| GTP-binding protein EngA [Moraxella catarrhalis 103P14B1]
 gi|326563523|gb|EGE13782.1| GTP-binding protein EngA [Moraxella catarrhalis 12P80B1]
          Length = 472

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 103/249 (41%), Gaps = 17/249 (6%)

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
            ++ A LI +++E+   L      G+   L    +D +          L F E       
Sbjct: 94  VDARAGLIGADSEIAHFL---HTLGKPVFLVANKMDGVHEAAYAEFFALGFGEPYATAAS 150

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             + V N +  L  D+   + +    E+     K+ I+G  N GKS+L N L  +D  +V
Sbjct: 151 HGRGVTNLLESLTADMPEDMPE---DELDGKALKLAIIGRPNVGKSTLVNRLLGEDRVVV 207

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILL 304
            D+PGTTRD + I  + EG    + DTAG+R     D+ VEK  + +T   +++A+++++
Sbjct: 208 FDMPGTTRDSIYIPFEREGRSYVLIDTAGVRRRGRIDEKVEKFSVVKTLQAIKDANVVVV 267

Query: 305 LKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +       +++     +       +    K D  S   ++   +        +  +  
Sbjct: 268 VIDAKEGIVDQDLHMLGYALDAGRAIVVAINKWDGLSQDQKDSVKIEIDRRFNFVPWVKI 327

Query: 357 KIKSILSNK 365
            + S L   
Sbjct: 328 HLISALYGN 336



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L K   A+V D+ G TRD    D   E     + DT GI E D
Sbjct: 7   VALIGRPNVGKSTLFNQLTKSRQALVADLAGLTRDRQYGDAHFENKSFIVVDTGGIGEMD 66

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSD 330
           D    ++     +++  +  AD+++ + +     I +  EI+            +  K D
Sbjct: 67  DGSGNIDDYMATQSYTAIHEADIVVFVVDARAGLIGADSEIAHFLHTLGKPVFLVANKMD 126

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            ++     E+        +  ++  G G+  L+  + + +     +    
Sbjct: 127 GVHEAAYAEFFALGFGEPYATAASHGRGVTNLLESLTADMPEDMPEDELD 176


>gi|84624044|ref|YP_451416.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898989|ref|YP_201168.2| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188576711|ref|YP_001913640.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188576902|ref|YP_001913831.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|123752759|sp|Q2P2T5|DER_XANOM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|84367984|dbj|BAE69142.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521163|gb|ACD59108.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521354|gb|ACD59299.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 465

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 101/266 (37%), Gaps = 41/266 (15%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE-----------VLNDI 196
                 L      W+ KL      +   +D ++EE V++  ++                I
Sbjct: 93  REGESSLDDEILAWLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGI 152

Query: 197 LFLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             L  ++ + + +   GE++ N     +I  +G  N GKS+L N L  ++  I +++PGT
Sbjct: 153 DELLEEVGARLPEEGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGT 212

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           TRD + +DL+ +G   ++ DTAG+R   + ++ VEK    +T   +E   + +L+ +   
Sbjct: 213 TRDSIAVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIERCQVAVLMLDATE 272

Query: 311 K--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSF 346
                               +    K D  S Y                       IS+ 
Sbjct: 273 GVTDQDATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVSWAEAVRISAL 332

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS 372
            G G+ EL   I    ++   +   S
Sbjct: 333 HGSGMRELFQAIHRAHASATHEFSTS 358



 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + ++G  N GKS++FNAL +   A+V D PG TRD       L+      + DT GI   
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDLY 332
           +D +     ++       ADL+L + +          + +++ +      + +  K D  
Sbjct: 65  EDGLAGATARQARAAAGEADLVLFVVDGREGESSLDDEILAWLRKLARPTVLVINKIDGT 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKL 369
              T   +            S+   +G++EL+ ++ + L  +    
Sbjct: 125 DEETVRSEFARYGFSDVVALSAAHRQGIDELLEEVGARLPEEGSGE 170


>gi|298373119|ref|ZP_06983109.1| ribosome-associated GTPase EngA [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298276023|gb|EFI17574.1| ribosome-associated GTPase EngA [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 438

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 18/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L K   AIV D  GTTRD     ++  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTKSRRAIVNDEAGTTRDRHYGKVEWNGKEFSVIDTGGWVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +DI E+E  ++  + +E AD+IL + ++ S          ++      + I +  K D +
Sbjct: 65  EDIFEEEINRQVSIAIEEADVILFVVDVLSGVTDLDMFVAQVLRKSGKNVIVVANKVDTF 124

Query: 333 S---------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                     +       ++SS  G G  +L++++ +      K+  
Sbjct: 125 DLQYQATEFYSLGLGDPFILSSVNGLGSGDLLDEVLNRFPKNEKEAE 171



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 11/167 (6%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D    SS   L     L   ++      K  E + +  K+ ++G  NAGKSSL NA    
Sbjct: 140 DPFILSSVNGLGSGDLLDEVLNRFPKNEKEAENLDDLPKLAVVGRPNAGKSSLVNAFLDD 199

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENA 299
           +  IVT+I GTTRD +    +  GY   + DTAGIR+   +    E   + R    +EN+
Sbjct: 200 NRNIVTEIAGTTRDSIYTRYNKFGYDFYLVDTAGIRKKAKVNEDVEYYSVIRAIRAIENS 259

Query: 300 DLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEE 338
           D+ +L+ +     E        +        +    K DL    + +
Sbjct: 260 DVCVLMIDAERGIESQDLNIFSLIQKNKKGLVVCVNKWDLIENKSNK 306


>gi|307152641|ref|YP_003888025.1| ribosome-associated GTPase EngA [Cyanothece sp. PCC 7822]
 gi|306982869|gb|ADN14750.1| ribosome-associated GTPase EngA [Cyanothece sp. PCC 7822]
          Length = 452

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 14/149 (9%)

Query: 198 FLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + + +++     GE+  N   K+ I+G  N GKSSL NA   +  AIV+ I GTTRD
Sbjct: 156 DLLDQLITYLPLS--GEVPENDEIKVAIVGRPNVGKSSLLNAFTGQQRAIVSPISGTTRD 213

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI---NS 310
            +   ++  G   ++ DTAGIR   ++    E  GI R F  +  +D++L + +     +
Sbjct: 214 TIDTIIERNGQHYRLIDTAGIRRKKNVEYGAEFFGINRAFKAIRRSDVVLFVVDALDGIT 273

Query: 311 KKEISFP-----KNIDFIFIGTKSDLYST 334
            +++        +    I +  K D    
Sbjct: 274 DQDLKLAGRIIDEGRATILVVNKWDAVEK 302



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LA    AIV D PG TRD        +    ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLAGDQQAIVHDEPGITRDRTYRPAFWQDRDFQVVDTGGLVFDD 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLY 332
           D        ++    +  A+  + + +  S      +EI+     +++  +    K +  
Sbjct: 66  DTEFLPLIREQAMAALTEANAAIFVVDGQSGPTAGDQEIADWLRSQSVPVLLAVNKCESV 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILS 363
                +               S+  G G  +L++++ + L 
Sbjct: 126 EQGIIQASQFWELGLGEPYPISAIHGNGTGDLLDQLITYLP 166


>gi|91792618|ref|YP_562269.1| GTP-binding protein EngA [Shewanella denitrificans OS217]
 gi|122968866|sp|Q12PT0|DER_SHEDO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|91714620|gb|ABE54546.1| Small GTP-binding protein domain [Shewanella denitrificans OS217]
          Length = 491

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ EG    + DTAG+R 
Sbjct: 200 IKLAIIGKPNVGKSTLINRILGEERVVVYDAPGTTRDSIYIPMEREGREYVLIDTAGVRR 259

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTK 328
             +  +++EK  + +T   VE+A+++LL+ +     +++++     +       +    K
Sbjct: 260 RSKVHEVIEKFSVIKTLKAVEDANVVLLVVDAREGIAEQDLGLLGFTLNAGRALVIAVNK 319

Query: 329 SD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D     +      E D           H IS+  G G+  L   I+    +  +++  S
Sbjct: 320 WDGIDQTVKDRVKSELDRRLGFIDFAKIHFISALHGTGVGHLYESIEEAYDSATRRVSTS 379

Query: 373 IPSH 376
           + + 
Sbjct: 380 MLTR 383



 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSD 330
           + +E +  +++   +E AD++L L +  +     +++       ++     +  K D
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFLTDARAGLTSADLAIAQHLRSRDKTTFVVANKVD 121


>gi|146295934|ref|YP_001179705.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|166224318|sp|A4XHX9|DER_CALS8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145409510|gb|ABP66514.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 440

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 11/192 (5%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
           ++K+ +I         +          S E  + +  + + + S+  +  + EI  +  K
Sbjct: 119 VNKIDNISEQPIIYEFYELGLSDPIPMSAEHGSGVGDVLDAVVSYFDKVGINEIEEDSIK 178

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +  ++  IV+DIPGTTRD +   ++ EG  + + DTAG+R   
Sbjct: 179 VAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSYVEFEGIPLTLIDTAGLRRKS 238

Query: 282 ---DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
              D +E+  + RT   +E +D+ ++L +               ++      I    K D
Sbjct: 239 KIYDNIERYSMLRTISAIERSDICVILLDGTEPVSEQDAKIAGYAYEAGKGCIIAVNKWD 298

Query: 331 LYSTYTEEYDHL 342
                 +  D  
Sbjct: 299 AVEKDEKTADEY 310



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  +  AIV D PG TRD +  + +  G    + DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIVGETEWRGITFNVIDTGGIEPYS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           +DI+ K+  ++    ++ +D+I+ + +      ++ +E++          +    K D  
Sbjct: 66  EDIILKQMRRQAQFAIDMSDVIIFMVDGKTGLTDADREVANMLRVSKKPIVLAVNKIDNI 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
           S     Y+           +S+  G G+ ++++ + S  
Sbjct: 126 SEQPIIYEFYELGLSDPIPMSAEHGSGVGDVLDAVVSYF 164


>gi|320159766|ref|YP_004172990.1| GTP-binding protein EngA [Anaerolinea thermophila UNI-1]
 gi|319993619|dbj|BAJ62390.1| GTP-binding protein EngA [Anaerolinea thermophila UNI-1]
          Length = 455

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 13/147 (8%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L + I+S     + GE   +  KI I+G  NAGKSSL N L  ++ AIV+ IPGTTRD +
Sbjct: 176 LDDLIASLPKVEEAGE--DDSVKIAIVGKPNAGKSSLLNRLVGEERAIVSPIPGTTRDAV 233

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK---- 311
              ++  G  + + DTAGIR    I    EK  + R+   +E +D+ LL+ +  +     
Sbjct: 234 DTRIEYNGVPITLIDTAGIRRRGKIEPGVEKYSVLRSLRAIERSDVALLMIDATTGITAQ 293

Query: 312 ----KEISFPKNIDFIFIGTKSDLYST 334
                          + +  K D    
Sbjct: 294 DTHIAGFILEAWKSAVVLVNKWDAVEK 320



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 76/190 (40%), Gaps = 37/190 (19%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + ++G  N GKS+LFN LA + +AIV DIPGTTRD L    +  G    I DT GI  + 
Sbjct: 6   VALVGRPNVGKSTLFNRLAGEPLAIVDDIPGTTRDRLFATAEWSGVEFDIVDTGGIDPSA 65

Query: 281 -----------DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNI- 320
                           KE   +  L +++AD IL L +             +I   K   
Sbjct: 66  ARAGREPLSIGSAEFIKEIRSQAELAIQDADAILFLVDAISGLTPADREVAQILRRKQQM 125

Query: 321 -------DFIFIGTKSD---LYSTYTEEYD------HLISSFTGEGLEELINKIKSILSN 364
                      +  K+D   L +  +E Y+      + IS+  G G  +L++ + + L  
Sbjct: 126 VDGKPYPPVFLVVNKADSANLRAVASEFYELGMGEPYPISALHGTGTGDLLDDLIASLPK 185

Query: 365 KFKKLPFSIP 374
             +       
Sbjct: 186 VEEAGEDDSV 195


>gi|283786127|ref|YP_003365992.1| GTP-binding protein [Citrobacter rodentium ICC168]
 gi|282949581|emb|CBG89199.1| GTP-binding protein [Citrobacter rodentium ICC168]
          Length = 490

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE    +++ L +E AD++L + +  +     + +  ++          +  K+D   
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIARHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358
                 D         H I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIHPIAASHGRGVLSLLEHV 158


>gi|254362978|ref|ZP_04979042.1| possible GTP-binding protein [Mannheimia haemolytica PHL213]
 gi|153094634|gb|EDN75438.1| possible GTP-binding protein [Mannheimia haemolytica PHL213]
          Length = 511

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R+
Sbjct: 223 IKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRK 282

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              +    EK  + +T   +++A+++LL  E     S +++S            + +  K
Sbjct: 283 RGKVNLAVEKFSVIKTLQAIQDANVVLLTIEAREGISDQDLSLLGFILNAGRSLVIVVNK 342

Query: 329 S-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 D+      E D           H IS+  G G+  L + +K   +   +K   S
Sbjct: 343 WDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTS 402

Query: 373 IPSH 376
           + + 
Sbjct: 403 MLTR 406



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 84/200 (42%), Gaps = 24/200 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++ GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + VE++  +++ L +E AD++L L +  +          +    +    + +  K+D   
Sbjct: 65  EGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGIAQYLRQREKTTVVVANKTDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             +   +            ++  G G+ +LI ++ + L  +     F       +     
Sbjct: 125 ADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLAPLGEQLNAEQF-------NQEQAG 177

Query: 385 QTVRYLEMASLNEKDCGLDI 404
           +  + +     +E D   D 
Sbjct: 178 ENAKNVANEETDEWDTEFDF 197


>gi|37525336|ref|NP_928680.1| GTP-binding protein EngA [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|41017002|sp|Q7N702|DER_PHOLL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|36784763|emb|CAE13673.1| GTP-binding protein EngA [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 493

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 207 LKLAIVGKPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYILIDTAGVRK 266

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A+++LL+ +     S +++S            +    K
Sbjct: 267 RGKITETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIAVNK 326

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L + I        +++  S
Sbjct: 327 WDGMSQEDKERVKEMLDYRLGFVDFARVHFISALHGSGVGNLFDSILEAYDCATRRVNTS 386

Query: 373 IPSH 376
           + + 
Sbjct: 387 LLTR 390



 Score =  109 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNID-----FIFIGTKSDLYS 333
           D VE     ++ L +E AD++L + +  +     + +  K++         +  K+D   
Sbjct: 65  DGVETHMAAQSLLAIEEADIVLFMVDARAGLMPADHAIAKHLRGREKATFLVANKTDGVD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
             T   +           I++  G G+ +LI ++
Sbjct: 125 IDTAIAEFYSLGLGDIYSIAASHGRGVTQLIERV 158


>gi|313673994|ref|YP_004052105.1| ribosome-associated gtpase enga [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940750|gb|ADR19942.1| ribosome-associated GTPase EngA [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 440

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 12/151 (7%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L + I SHI +     I     KIV++G  N GKSSL NA   ++  IVT IPGTTRD +
Sbjct: 153 LLDRIVSHIKEEPENFIENERLKIVVIGRPNMGKSSLINAWLNEERVIVTPIPGTTRDAV 212

Query: 259 TIDLDLEGYLVKISDTAGIRETD----DIVEKEGIKRTFLEVENADLILLLKEIN---SK 311
               +  G    + DTAGIR+      D +EK G  R +  +E +D+++ L +     ++
Sbjct: 213 DSYFEYNGEKYILIDTAGIRKKSVMFKDRIEKYGYYRAYDSIERSDVVVALIDATEGVTE 272

Query: 312 KEISFPKN-----IDFIFIGTKSDLYSTYTE 337
           K++    +        I    K DL     E
Sbjct: 273 KDVKIVADAYELGKPVIIAINKWDLLENKAE 303



 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 21/176 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ ILG  N GKS+LFN +A + +AI  D+PG TRD+L      EG    + DT G   
Sbjct: 2   LKVGILGRPNVGKSTLFNRIAGRRIAITDDMPGVTRDMLETICHWEGKNFLLIDTPGFDL 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISF----PKNIDFIFIGTKSDL 331
            DDI++KE  K+ F  +E  DL++L+ +         EI       +NI FI +  K D 
Sbjct: 62  KDDIIKKEMHKQFFSALEEVDLVILMLDGKEGLHPLDEIVVSMMRERNIPFILVINKIDS 121

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                   +           IS+  G  ++ L+++I S      K+ P +   ++R
Sbjct: 122 DERELNVAEFYKLGIDDILSISANHGRNVDILLDRIVS----HIKEEPENFIENER 173


>gi|26987593|ref|NP_743018.1| GTP-binding protein EngA [Pseudomonas putida KT2440]
 gi|37999649|sp|Q88PJ3|DER_PSEPK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|24982270|gb|AAN66482.1|AE016277_1 GTP-binding protein EngA [Pseudomonas putida KT2440]
          Length = 487

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 83/205 (40%), Gaps = 32/205 (15%)

Query: 200 KNDISSHISQGKLGEII-----RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +  +   +++G+    I     ++G KI I+G  N GKS+L N +  ++  +V D PGTT
Sbjct: 168 EEALEQDVAEGEEAVRIPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDEPGTT 227

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK 311
           RD + I  + +G      DTAG+R+   I    EK  + +T   +++A++++ + +    
Sbjct: 228 RDSIYIPFERDGEKYTFIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREG 287

Query: 312 --------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFT 347
                      +       +    K D        Y                 H IS+  
Sbjct: 288 VVDHDLNLLGFALEAGRAIVIALNKWDGMEPGERAYVKTELERRLFFVDFADIHFISALH 347

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
           G G+  L   +++   +   + P S
Sbjct: 348 GTGVGNLYKSVQAAFQSAVTRWPTS 372



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L K   AIV D+ G TRD    D   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ + +E AD +L L +  +          E    +N   I +  K D
Sbjct: 65  VGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKAAILVANKID 121


>gi|161986480|ref|YP_311456.2| GTP-binding protein EngA [Shigella sonnei Ss046]
 gi|323169045|gb|EFZ54722.1| small GTP-binding domain protein [Shigella sonnei 53G]
          Length = 490

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+ ++++L+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDTNVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTS 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+ ++
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLERV 158


>gi|78047628|ref|YP_363803.1| GTP-binding protein EngA [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|123743974|sp|Q3BTW0|DER_XANC5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78036058|emb|CAJ23749.1| GTP-binding protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 465

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 102/261 (39%), Gaps = 41/261 (15%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE-----------VLNDILFLKN 201
            L      W+ KL      +   +D ++EE V++  ++                I  L +
Sbjct: 98  SLDDEILAWLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLD 157

Query: 202 DISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ + + +   GE++ N     +I  +G  N GKS+L N L  ++  I +++PGTTRD +
Sbjct: 158 EVGARLPEEGAGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSI 217

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            +DL+ +G   ++ DTAG+R   + ++ VEK    +T   +E   + +L+ +        
Sbjct: 218 AVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGVTDQ 277

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEGL 351
                          +    K D  S Y                       IS+  G G+
Sbjct: 278 DATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVNWAEAVRISALHGSGM 337

Query: 352 EELINKIKSILSNKFKKLPFS 372
            EL   I    ++   +   S
Sbjct: 338 RELFQAIHRAHASATHEFSTS 358



 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + ++G  N GKS++FNAL +   A+V D PG TRD       L+      + DT GI   
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDLY 332
           ++ +     ++       ADL+L + +          + +++ +      + +  K D  
Sbjct: 65  EEGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARPTVLVINKIDGT 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNK 365
              T   +            S+   +G++EL++++ + L  +
Sbjct: 125 DEETVRSEFARYGFSDVVALSAAHRQGIDELLDEVGARLPEE 166


>gi|227893492|ref|ZP_04011297.1| GTP-binding protein EngA [Lactobacillus ultunensis DSM 16047]
 gi|227864717|gb|EEJ72138.1| GTP-binding protein EngA [Lactobacillus ultunensis DSM 16047]
          Length = 435

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD      +  G+   + DT GI    
Sbjct: 6   VAIVGRPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
             +E+E   +  + +E AD+I++       + +++ +   + +      I    K+D   
Sbjct: 66  GKIEEEIRAQAEIAIEEADVIVMLTSVVNHMTDLDERVAHLLYRTKKPVILAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G+ +L+++I +            + 
Sbjct: 126 QRNDIYDFYSLGLGDPIPVSSSHGTGIGDLLDEIVNNFPEDKDTQSEDVI 175



 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 30/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++I ++  + K  +   +     ++G  N GKSS+ N L  +D  IV +  GTTRD 
Sbjct: 154 DLLDEIVNNFPEDKDTQS-EDVISFSVIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +       G   K+ DTAGIR    +    EK  + R    +E +D++LL+ + ++    
Sbjct: 213 VDTPFTKNGVKYKVVDTAGIRRRGKVYEKTEKYSVLRAMSAIERSDVVLLVLDASTGIRE 272

Query: 312 -----KEISFPKNIDFIFIGTKSDLY---STYTEEYDH---------------LISSFTG 348
                   +       I +  K DL    ST  +E++                 +S+ TG
Sbjct: 273 QDKHVAGYAHEAGRGIIIVVNKWDLLKKNSTSAKEFEREIRAEFQYLDYAPILFVSAKTG 332

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L+++   +K +  N+ +++  S+ +
Sbjct: 333 QRLDQIPTLVKEVYDNQNQRIQSSVLN 359


>gi|229815385|ref|ZP_04445720.1| hypothetical protein COLINT_02432 [Collinsella intestinalis DSM
           13280]
 gi|229809165|gb|EEP44932.1| hypothetical protein COLINT_02432 [Collinsella intestinalis DSM
           13280]
          Length = 445

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 73/148 (49%), Gaps = 12/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L +++ S + +    E    +  ++ I+G  NAGKSSLFN +   D +IV++I GTTRD
Sbjct: 157 DLLDEVVSLLPEDAGDEDDEPDTLRVAIIGRPNAGKSSLFNKMIGNDRSIVSNIAGTTRD 216

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK-- 311
            +   ++ +G   ++ DTAGIR+   +    E   + R    ++ AD+ LL+ + ++   
Sbjct: 217 AIDTVVERDGKRYRMVDTAGIRKKSTVYENIEYYSMVRGLRAIDRADVALLVVDASAGVT 276

Query: 312 ------KEISFPKNIDFIFIGTKSDLYS 333
                   ++  +    + +  K DL  
Sbjct: 277 EQDQKVANLAIERGCALVVLLNKWDLLK 304



 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 20/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS+L N +A+   AIV    G TRD      D  G    + DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLVNRIAQTSDAIVHQSRGVTRDRSYHVADWNGREFMLVDTGGIEPMK 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDL 331
           +DD+       +     E A +IL + + +   ++++ S  +           +  K D 
Sbjct: 66  SDDVFATSIRDQALAAAEEAAVILFVVDGSVGATEEDESVARMVRKLKKPTFLLVNKLDN 125

Query: 332 YSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPF 371
            +   +                S+  G G  +L++++ S+L         
Sbjct: 126 PARENDSLWEFYSLGVGDPVAVSALHGHGTGDLLDEVVSLLPEDAGDEDD 175


>gi|300726752|ref|ZP_07060182.1| ribosome-associated GTPase EngA [Prevotella bryantii B14]
 gi|299775865|gb|EFI72445.1| ribosome-associated GTPase EngA [Prevotella bryantii B14]
          Length = 437

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN   +   AIV+D  GTTRD     +   G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRFTQSRRAIVSDTAGTTRDRQYGKVSWNGKDFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E    ++  +  E ADL+L L +  +          +I     +  I +  K D  
Sbjct: 65  DDIFEDAIRRQVLVATEEADLVLFLVDTETGVTDWDVDVAKILRRAKLPIILVANKVDNS 124

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKL 369
             Y E  +           IS+ TG G  +L++ I   + N  ++ 
Sbjct: 125 GEYYEAAEFYKLGLGDPVCISAATGGGTGDLLDMILEKMPNSPEET 170



 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 11/170 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I   +       I  +  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DLLDMILEKMPNSPEETIEEDIPRFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    D  G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTKYDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRAIENSDVCILMLDATRGIEA 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  +    N   + +  K DL    +++      +   + +   ++
Sbjct: 274 QDMNIFQLIQRNNKSLVVVVNKWDLVEEKSQKVIDTFENAIRKRMAPFVD 323


>gi|163754018|ref|ZP_02161141.1| hypothetical protein KAOT1_20387 [Kordia algicida OT-1]
 gi|161326232|gb|EDP97558.1| hypothetical protein KAOT1_20387 [Kordia algicida OT-1]
          Length = 434

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 30/204 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +   +   +  E   N  +  ++G  NAGKSSL NAL  +D  IVTDI GTTRD 
Sbjct: 154 EMLDALVEALPDVEETE-EENLPRFAVVGRPNAGKSSLINALIGEDRYIVTDIAGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR    +    E   + R+   +E++D+ LL+ +     + 
Sbjct: 213 IDTKYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSIRAIEHSDVCLLVVDATRGFDS 272

Query: 314 -------ISFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                  ++   +   + +  K DL                     +T+     IS  T 
Sbjct: 273 QVQNIFWLAEKNHKGIVILVNKWDLVEKDTSTVKEFEKHIRQQIEPFTDVPIVFISVLTK 332

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           + + + I     +  N+  ++P S
Sbjct: 333 QRIFKAIETAVQVYKNRSNRVPTS 356



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN + K+  AIV  + G TRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRMIKRREAIVDSVSGVTRDRHYGKSDWNGKEFSLIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E+E  K+  L ++ AD IL + ++ S           +    N   + +  K D  
Sbjct: 65  DDIFEQEIDKQVELAIDEADAILFVVDVESGVTGMDEEVANLLRRVNKPVLLVVNKVDAA 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +   +  +           I+S  G G  E+++ +   L +  +    ++P
Sbjct: 125 NRLHDATEFYSLGLGEYYPIASINGSGTGEMLDALVEALPDVEETEEENLP 175


>gi|117620764|ref|YP_856299.1| GTP-binding protein EngA [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166224301|sp|A0KJ48|DER_AERHH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|117562171|gb|ABK39119.1| GTP-binding protein EngA [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 499

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            K  I+G  N GKS+L N +  +D  IV D+PGTTRD + I ++ +     I DTAG+R 
Sbjct: 213 IKFAIVGRPNVGKSTLTNRMLGEDRVIVYDMPGTTRDSVYIPMERDEQKYVIIDTAGVRR 272

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEIS-----FPKNIDFIFIGTK 328
             +  + VEK  + +T   +E+A++ LL+ +     + +++S            + +  K
Sbjct: 273 RGKVHETVEKFSVIKTLKAIEDANVCLLVIDAQETITDQDLSILGFVLNTGRSVVLVVNK 332

Query: 329 SD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D     +      E D           H IS+  G G+  L   I+    +  ++   +
Sbjct: 333 WDGLDQKVKEDVKNELDRRLGFIDFARVHFISALHGSGVGHLFESIQEAYQSATRRTSTA 392

Query: 373 IPSH 376
           + + 
Sbjct: 393 MLTR 396



 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 76/193 (39%), Gaps = 22/193 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L      + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGELEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + +E +  +++ L +E AD++L + +  +          E     +     +  K+D   
Sbjct: 65  EGIELKMAEQSLLAIEEADVVLFMVDARAGLTAADQAIAEHLRKTHKKVFLVANKTDGID 124

Query: 334 ---------TYTEEYDHLISSFTGEGLEELIN-----KIKSILSNKFKKLPFSIPSHKRH 379
                           + +++  G G+  L+       +++++    ++           
Sbjct: 125 GDSAVSEFYGLALGEVYQMAAAHGRGVLSLLELALAPHLETLVDAATQETAQDEEEEDFD 184

Query: 380 LYHLSQTVRYLEM 392
              L + V   E+
Sbjct: 185 EEALLRMVAAGEL 197


>gi|294784590|ref|ZP_06749879.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_27]
 gi|294487806|gb|EFG35165.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_27]
          Length = 440

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 93/241 (38%), Gaps = 35/241 (14%)

Query: 132 ADLISSETEMQRRLSMEGMS------------GELSSLYGQWIDKLTHIRSFIEADLD-- 177
            D + ++ + Q  ++M                  L       + K           +D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124

Query: 178 FSEEEDVQNFS----------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           F +++DV +F           S E   ++  + + +   I +    E      K+ ++G 
Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVEIIGKMDFPEEDEEVLKLAVIGK 184

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIV 284
            NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR     ++ +
Sbjct: 185 PNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRKSKVEESL 244

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           E   + R    ++ AD+ +L+ +              I+  +    I +  K DL     
Sbjct: 245 EYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIVMNKWDLVENKN 304

Query: 337 E 337
            
Sbjct: 305 N 305



 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D +   F G G E L+
Sbjct: 123 -NFFEQQDDVY-DFYGLGFEYLV 143


>gi|163813998|ref|ZP_02205391.1| hypothetical protein COPEUT_00150 [Coprococcus eutactus ATCC 27759]
 gi|158450692|gb|EDP27687.1| hypothetical protein COPEUT_00150 [Coprococcus eutactus ATCC 27759]
          Length = 445

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++ SH  +    E+     +I I+G  N GKSS+ N L  +D  IV+DI GTTRD 
Sbjct: 161 DMLDEVVSHFDESAKEEVEDERPRIAIIGKPNVGKSSIINKLLGEDRVIVSDIAGTTRDA 220

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++   G      DTAG+R+   I   +E+  I RT   VE  ++ +L+ +       
Sbjct: 221 IDTEVVRNGREYVFIDTAGLRKKSKIKEDIERYSIIRTVSAVERCNVAVLVIDATEGITD 280

Query: 312 -----KEISFPKNIDFIFIGTKSDLYS-------TYTEEYDH-----------LISSFTG 348
                  I+  +    I    K D           +TEE  +            IS+ TG
Sbjct: 281 QDAKIAGIAHERGKGMIIAVNKWDAIEKNDKTIYKFTEEIRNKLSYMPYAELLFISAETG 340

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L   I +++ N   ++   + +
Sbjct: 341 QRLPKLFETIDAVIENHSLRVATGVLN 367



 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 19/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  D++   Y   + DT GI  ET
Sbjct: 11  VAIVGRPNVGKSTLFNVLAGEKISIVQDTPGVTRDRIYADINWLDYNFTLIDTGGIEPET 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           D+I+ K   ++  + +E AD+I+ + ++            ++        + +  K D +
Sbjct: 71  DNIILKSMREQAEIAIETADVIIFMTDVRQGMVDDDSKVADMLRRSKKPIVLVVNKVDSF 130

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             +  +            H IS  +  G+ ++++++ S      K+ 
Sbjct: 131 EKFMPDVYEFYNLGLGDPHPISGSSRLGIGDMLDEVVSHFDESAKEE 177


>gi|145299527|ref|YP_001142368.1| GTP-binding protein EngA [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166224302|sp|A4SNZ8|DER_AERS4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|142852299|gb|ABO90620.1| GTP-binding protein EngA [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 499

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            K  I+G  N GKS+L N +  +D  IV D+PGTTRD + + ++ +     + DTAG+R 
Sbjct: 213 IKFAIVGRPNVGKSTLTNRMLGEDRVIVYDMPGTTRDSVYVPMERDEQKYVVIDTAGVRR 272

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
             +  + VEK  + +T   +E+A++ LL+ +     + +++S            + +  K
Sbjct: 273 RGKVHETVEKFSVIKTLKAIEDANVCLLVIDAQETITDQDLSILGFVLHSGRSVVLVVNK 332

Query: 329 SD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D     +      E D           H IS+  G G+  L   I+    +  ++   +
Sbjct: 333 WDGLDQKVKEDVKNELDRRLGFIDFARVHFISALHGSGVGHLFESIQEAYQSATRRTSTA 392

Query: 373 IPSH 376
           + + 
Sbjct: 393 MLTR 396



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L      + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGELEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
           + +E +  +++ L +E AD++L + +  +    +           +     +  K+D
Sbjct: 65  EGIELKMAEQSLLAIEEADVVLFMVDARAGLTAADQAIAAHLRKTHKKVFLVANKTD 121


>gi|139439670|ref|ZP_01773083.1| Hypothetical protein COLAER_02111 [Collinsella aerofaciens ATCC
           25986]
 gi|133775011|gb|EBA38831.1| Hypothetical protein COLAER_02111 [Collinsella aerofaciens ATCC
           25986]
          Length = 444

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 13/149 (8%)

Query: 198 FLKNDISSHI--SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L +DI + +   + ++ +   +   + I+G  NAGKSSLFN +   D +IV++I GTTR
Sbjct: 156 DLLDDIVALLPEEEDEVADEFPDALNVAIIGRPNAGKSSLFNRILGADRSIVSNIAGTTR 215

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN--- 309
           D +   ++  G   ++ DTAGIR+   +    E   + R    ++ AD+ LL+ + +   
Sbjct: 216 DAIDTVVERNGKHYRMVDTAGIRKKSTVYENIEYYSMVRGLRAIDRADVALLVVDASVGV 275

Query: 310 SKKE-----ISFPKNIDFIFIGTKSDLYS 333
           ++++     ++  +    + +  K DL  
Sbjct: 276 TEQDQKVMGLAIERGCAIVVLLNKWDLLD 304



 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 20/173 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + ++G  N GKS+L N LA+   AIV +  G TRD      D  G    I DT GI   +
Sbjct: 5   VAVVGRPNVGKSTLVNRLAQTSDAIVHESRGVTRDRSYHTADWNGREFTIVDTGGIEPLK 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDL 331
           +DD+       +     E A +IL + +     ++++ S  +     +     +  K D 
Sbjct: 65  SDDVFATSIRDQALAAAEEAAVILFVVDGRTGVTEEDESVARMLKRCDKPVFLLVNKLDN 124

Query: 332 YSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                +                S+  G G  +L++ I ++L  +  ++    P
Sbjct: 125 PDRENDSIWEFYSLGIGEPTPLSALHGHGTGDLLDDIVALLPEEEDEVADEFP 177


>gi|146299639|ref|YP_001194230.1| GTP-binding protein EngA [Flavobacterium johnsoniae UW101]
 gi|238686648|sp|A5FIR0|DER_FLAJ1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|146154057|gb|ABQ04911.1| small GTP-binding protein [Flavobacterium johnsoniae UW101]
          Length = 437

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 85/204 (41%), Gaps = 27/204 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L   I +   + +  E      +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +
Sbjct: 157 LDALIDAFPEKPEPAEAAEELPRFAVVGRPNAGKSSFINALIGQDRYIVTDIAGTTRDAI 216

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE-- 313
               D  G+   + DTAGIR    +    E   + R+   +E+AD+ +L+ +     E  
Sbjct: 217 DTKFDRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSVRAIEHADVCILVIDATRGFEGQ 276

Query: 314 ------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                 ++       + +  K DL    T      +SS   E       KI+  L   F 
Sbjct: 277 DQSIFWLAEKNRKGVVILVNKWDLVEKDT------MSSRDYE------EKIRKELM-PFT 323

Query: 368 KLPFSIP---SHKRHLYHLSQTVR 388
            +P       + +R L  L  TV+
Sbjct: 324 DVPILFVSALTKQRLLKALEATVQ 347



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 18/173 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           N   + I+G  N GKS+LFN L ++  AIV  + G TRD      +  G    + DT G 
Sbjct: 2   NNNIVAIVGRPNVGKSTLFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGY 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
           +R +DD+ E E  K+  L ++ AD+I+ + ++            ++        +    K
Sbjct: 62  VRGSDDVFEGEIRKQVELAIDEADVIIFVVDVEEGITPMDETVAKLLRKVTKPVLLAVNK 121

Query: 329 SDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D      +  +            +S +G G  +L++ +      K +    +
Sbjct: 122 VDNAMREKDAIEFYNLGLGDYYTFASISGSGTGDLLDALIDAFPEKPEPAEAA 174


>gi|284050435|ref|ZP_06380645.1| GTP-binding protein EngA [Arthrospira platensis str. Paraca]
 gi|291569696|dbj|BAI91968.1| GTP-binding protein [Arthrospira platensis NIES-39]
          Length = 453

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 12/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  H+      +      ++ I+G  N GKSSL N    ++ AIV+ I GTTRD 
Sbjct: 156 ELLDTLIEHLPSS-TEDDDNEELRVAIVGRPNVGKSSLLNTFLGQERAIVSPISGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI-----N 309
           +   ++  G   ++ DTAGIR     +   E  GI R F  +  AD++L + +      +
Sbjct: 215 IDTIVEHNGNTYRLVDTAGIRRKKHVEYGAEFFGINRAFKAIRRADVVLFVIDAVEGVTD 274

Query: 310 SKKEIS---FPKNIDFIFIGTKSDLYST 334
             ++++          + +  K D    
Sbjct: 275 QDQKLAGRIADDGRACVIVVNKWDAVEK 302



 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 60/168 (35%), Gaps = 19/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD        +     + DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLTQTQDAIVHDQPGMTRDRTYRSAYWQDREFIVVDTGGLVFDD 65

Query: 282 DIVEKE-GIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIG--TKSDLY 332
           D        ++  + +  A   +L+ +         +   S+ +      +    K +  
Sbjct: 66  DTEFVPLIREQALMALAEATAAILVVDGQTGPTGGDEAIASWLRQQKVPILLAVNKCESP 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLP 370
           +    +               SS  G G  EL++ +   L +  +   
Sbjct: 126 TQGLTQAAQFWELGLGTPFPISSIHGNGTGELLDTLIEHLPSSTEDDD 173


>gi|21231435|ref|NP_637352.1| GTP-binding protein EngA [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768511|ref|YP_243273.1| GTP-binding protein EngA [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991681|ref|YP_001903691.1| GTP-binding protein EngA [Xanthomonas campestris pv. campestris
           str. B100]
 gi|26006714|sp|Q8P979|DER_XANCP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|81305517|sp|Q4UUM0|DER_XANC8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|229807529|sp|B0RT56|DER_XANCB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|21113105|gb|AAM41276.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66573843|gb|AAY49253.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733441|emb|CAP51642.1| GTP-binding protein, probable [Xanthomonas campestris pv.
           campestris]
          Length = 465

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 101/261 (38%), Gaps = 41/261 (15%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE-----------VLNDILFLKN 201
            L      W+ KL      +   +D ++EE V++  S+                I  L  
Sbjct: 98  SLDDEILAWLRKLARPTVLVINKIDGTDEESVRSEFSRYGFSDVVALSAAHRQGIDDLLE 157

Query: 202 DISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ + + +   GE++ N     +I  +G  N GKS+L N L  ++  I +++PGTTRD +
Sbjct: 158 EVGARLPEEGAGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSI 217

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            +DL+ +G   ++ DTAG+R   + ++ VEK    +T   +E   + +L+ +        
Sbjct: 218 AVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGVTDQ 277

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEGL 351
                          +    K D  S Y                       IS+  G G+
Sbjct: 278 DATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVNWAEAVRISALHGSGM 337

Query: 352 EELINKIKSILSNKFKKLPFS 372
            EL   I    ++   +   S
Sbjct: 338 RELFQAIHRAHASATHEFSTS 358



 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + ++G  N GKS++FNAL +   A+V D PG TRD       L+      + DT GI   
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSD-- 330
           ++ +     ++       ADL+L + +          + +++ +      + +  K D  
Sbjct: 65  EEGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARPTVLVINKIDGT 124

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                   +S Y       +S+   +G+++L+ ++ + L  +
Sbjct: 125 DEESVRSEFSRYGFSDVVALSAAHRQGIDDLLEEVGARLPEE 166


>gi|317132122|ref|YP_004091436.1| ribosome-associated GTPase EngA [Ethanoligenens harbinense YUAN-3]
 gi|315470101|gb|ADU26705.1| ribosome-associated GTPase EngA [Ethanoligenens harbinense YUAN-3]
          Length = 441

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L  + ++IV D PG TRD +    +  G+   ++DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNKLVGRRISIVEDTPGVTRDRIYAPCEWCGHTFLLADTGGIEMKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           DD+      ++    ++ AD+I+ + ++        N   ++    +   +    K+D  
Sbjct: 66  DDVFLSGIREQAKAAIDTADVIIFMTDLRSGVTAQDNEIADMLRRSHRPVVLCVNKADTL 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                E              +SS  G G  +L++ +  +L  +         
Sbjct: 126 GNTPSEVYEFYNLGLGDPFPVSSVHGHGTGDLLDHVVELLPGEGDGEEDEAV 177



 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 30/204 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   +     GE      ++ ++G  NAGKSSL N +A ++  +V+DIPGTTRD 
Sbjct: 156 DLLDHVVELLPGEGDGEED-EAVRVAVIGKPNAGKSSLVNRIAGEERMLVSDIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++ E       DTAGIR   +  + VE+  + R F  VE AD+ +++ +  +    
Sbjct: 215 VDTRIENEYGTFVFVDTAGIRRHSKVQEAVERYSVMRAFSAVERADVCVMMIDATTGFTE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------------------SSFTG 348
                   +  +    I    K DL     +  D                     S+ TG
Sbjct: 275 QDSKIAGYAHEQGKASIIAVNKWDLVEKTEKTMDAFRKKLEQDFSFMSYAPILFLSAKTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
             +++L   ++ +     +++P  
Sbjct: 335 RNIDKLFQMVQRVRVAYERRIPTG 358


>gi|259907722|ref|YP_002648078.1| GTP-binding protein EngA [Erwinia pyrifoliae Ep1/96]
 gi|224963344|emb|CAX54829.1| GTP-binding protein [Erwinia pyrifoliae Ep1/96]
 gi|283477576|emb|CAY73492.1| GTP-binding protein engA [Erwinia pyrifoliae DSM 12163]
 gi|310764770|gb|ADP09720.1| GTP-binding protein EngA [Erwinia sp. Ejp617]
          Length = 498

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 27/190 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 210 IKLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRK 269

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A++++L+ + +   S +++S            + +  K
Sbjct: 270 RGKVTETVEKFSVIKTLKAIEDANVVMLVIDAHEGISDQDLSLLGFILNSGRSLVIVVNK 329

Query: 329 SD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D     +     E  D           H IS+  G G+  L   +        +++  S
Sbjct: 330 WDGLSQEVRDEVKEALDYRLGFIDFARIHFISALHGSGVGNLFESVTEAYDCSTRRVNTS 389

Query: 373 IPSHKRHLYH 382
           + +   H+  
Sbjct: 390 MLTRIMHMAA 399



 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGNE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE    +++ L +E AD++L + +  +     +++  K+          +  K+D   
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADVAIAKHLRSRQKPTFIVANKTDGLD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN 356
             +   D         H I++  G G+  L+ 
Sbjct: 125 ADSAVVDFWSLGLGEIHPIAASHGRGVTSLLE 156


>gi|237741193|ref|ZP_04571674.1| GTP-binding protein [Fusobacterium sp. 4_1_13]
 gi|229430725|gb|EEO40937.1| GTP-binding protein [Fusobacterium sp. 4_1_13]
          Length = 440

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 35/241 (14%)

Query: 132 ADLISSETEMQRRLSMEGMS------------GELSSLYGQWIDKLTHIRSFIEADLD-- 177
            D + ++ + Q  ++M                  L       + K           +D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124

Query: 178 FSEEEDVQNFS----------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           F +++DV +F           S E   ++  + + +   I +    E   +  K+ ++G 
Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVEIIGKMDFPEEDEDVLKLAVIGK 184

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIV 284
            NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR     ++ +
Sbjct: 185 PNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRKSKVEESL 244

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           E   + R    ++ AD+ +L+ +              I+  +    I +  K DL     
Sbjct: 245 EYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIVMNKWDLVENKN 304

Query: 337 E 337
            
Sbjct: 305 N 305



 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D +   F G G E L+
Sbjct: 123 -NFFEQQDDVY-DFYGLGFEYLV 143


>gi|21242765|ref|NP_642347.1| GTP-binding protein EngA [Xanthomonas axonopodis pv. citri str.
           306]
 gi|325927625|ref|ZP_08188854.1| small GTP-binding protein domain/GTP-binding hypothetical protein
           [Xanthomonas perforans 91-118]
 gi|26006715|sp|Q8PKY6|DER_XANAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|21108245|gb|AAM36883.1| GTP-binding protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|325541992|gb|EGD13505.1| small GTP-binding protein domain/GTP-binding hypothetical protein
           [Xanthomonas perforans 91-118]
          Length = 465

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 102/261 (39%), Gaps = 41/261 (15%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE-----------VLNDILFLKN 201
            L      W+ KL      +   +D ++EE V++  ++                I  L +
Sbjct: 98  SLDDEILAWLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLD 157

Query: 202 DISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ + + +   GE++ N     +I  +G  N GKS+L N L  ++  I +++PGTTRD +
Sbjct: 158 EVGARLPEEGAGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSI 217

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            +DL+ +G   ++ DTAG+R   + ++ VEK    +T   +E   + +L+ +        
Sbjct: 218 AVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGVTDQ 277

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEGL 351
                          +    K D  S Y                       IS+  G G+
Sbjct: 278 DATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVNWAEAVRISALHGSGM 337

Query: 352 EELINKIKSILSNKFKKLPFS 372
            EL   I    ++   +   S
Sbjct: 338 RELFQAIHRAHASATHEFSTS 358



 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + ++G  N GKS++FNAL +   A+V D PG TRD       L+      + DT GI   
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDLY 332
           ++ +     ++       ADL+L + +          + +++ +      + +  K D  
Sbjct: 65  EEGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARPTVLVINKIDGT 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNK 365
              T   +            S+   +G++EL++++ + L  +
Sbjct: 125 DEETVRSEFARYGFSDVVALSAAHRQGIDELLDEVGARLPEE 166


>gi|312134636|ref|YP_004001974.1| ribosome-associated gtpase enga [Caldicellulosiruptor owensensis
           OL]
 gi|311774687|gb|ADQ04174.1| ribosome-associated GTPase EngA [Caldicellulosiruptor owensensis
           OL]
          Length = 440

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 98/252 (38%), Gaps = 29/252 (11%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  M           ++K+ +I         +          S E    +  + + + ++
Sbjct: 103 VANMLRASKKPIVLAVNKIDNISQEPMIYEFYELGLSDPIAMSAEHGTGVGDVLDAVVNY 162

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +    + EI  +  K+ I+G  N GKSSL N +  ++  IV+DIPGTTRD +    + EG
Sbjct: 163 LDNVGINEIEESTIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTFEFEG 222

Query: 267 YLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEIS 315
             + + DTAG+R    I    E+  + RT   +E +D+ ++L +               +
Sbjct: 223 IPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIILLDGTEGVSEQDAKIAGYA 282

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHL------------------ISSFTGEGLEELINK 357
           +      I    K D      +  D                    IS+ TG  +++L+  
Sbjct: 283 YEAGKGCIIAVNKWDAVEKDEKTADEYKKQIEEKLSFLKFAPVLFISAKTGFRVKKLLET 342

Query: 358 IKSILSNKFKKL 369
           I  +  N  +++
Sbjct: 343 ILYVYENYTRRI 354



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  +  AIV D PG TRD +  + +  G    + DT GI   +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPYS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           +DI+ K+  ++    V+ +D+I+ + +      ++ +E++          +    K D  
Sbjct: 65  EDIILKQMRRQAQFAVDMSDVIIFIVDGKTGLTDADREVANMLRASKKPIVLAVNKIDNI 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
           S     Y+           +S+  G G+ ++++ + + L N
Sbjct: 125 SQEPMIYEFYELGLSDPIAMSAEHGTGVGDVLDAVVNYLDN 165


>gi|161869787|ref|YP_001598955.1| GTP-binding protein EngA [Neisseria meningitidis 053442]
 gi|161595340|gb|ABX73000.1| GTP-binding protein engA [Neisseria meningitidis 053442]
          Length = 536

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  DI     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 206 LIEDILETFPEPEAEEADAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 265

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 266 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 325

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 326 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 385

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 386 DGLFDSIQAAYNAAMIKMPTPKITR 410



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 56  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKNIDFIFI---------G 326
           D  +  E  K+T   V+ AD ++ L +  +      K I+         +         G
Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 175

Query: 327 TKSDLYSTYTE---EYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
            ++ L + + E      ++IS   G+G+  LI  I         + 
Sbjct: 176 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETFPEPEAEE 221


>gi|330830064|ref|YP_004393016.1| GTP-binding protein engA [Aeromonas veronii B565]
 gi|328805200|gb|AEB50399.1| GTP-binding protein engA [Aeromonas veronii B565]
          Length = 498

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            K  I+G  N GKS+L N +  +D  IV D+PGTTRD + I ++ +     + DTAG+R 
Sbjct: 213 IKFAIVGRPNVGKSTLTNRMLGEDRVIVYDMPGTTRDSVYIPMERDEQKYVVIDTAGVRR 272

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
             +  + VEK  + +T   +E+A++ LL+ +     + +++S            + +  K
Sbjct: 273 RGKVHETVEKFSVIKTLKAIEDANVCLLVIDAQETITDQDLSILGYVLHAGRSVVLVVNK 332

Query: 329 SD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D     +      E D           H IS+  G G+  L   I+    +  ++   +
Sbjct: 333 WDGLDQKVKEDVKNELDRRLGFIDFARVHFISALHGSGVGHLFESIQEAYQSATRRTSTA 392

Query: 373 IPSH 376
           + + 
Sbjct: 393 MLTR 396



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L      + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGELEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
           + +E +  +++ L +E AD++L + +  +          E     +     +  K+D
Sbjct: 65  EGIELKMAEQSLLAIEEADVVLFMVDARAGLTAADQAIAEHLRKAHKKVFLVANKTD 121


>gi|289666002|ref|ZP_06487583.1| GTP-binding protein EngA [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 465

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 102/261 (39%), Gaps = 41/261 (15%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE-----------VLNDILFLKN 201
            L      W+ KL      +   +D ++EE V++  ++                I  L  
Sbjct: 98  SLDDEILAWLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLE 157

Query: 202 DISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++++ + +   GE++ N     +I  +G  N GKS+L N L  ++  I +++PGTTRD +
Sbjct: 158 EVAARLPEEGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSI 217

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            +DL+ +G   ++ DTAG+R   + ++ VEK    +T   +E   + +L+ +        
Sbjct: 218 AVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGVTDQ 277

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEGL 351
                          +    K D  S Y                       IS+  G G+
Sbjct: 278 DATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVSWAEAVRISALHGSGM 337

Query: 352 EELINKIKSILSNKFKKLPFS 372
            EL   I    ++   +   S
Sbjct: 338 RELFQAIHRAHASATHEFSTS 358



 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + ++G  N GKS++FNAL +   A+V D PG TRD       L+      + DT GI   
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDLY 332
           ++ +     ++       ADL+L + +          + +++ +      + +  K D  
Sbjct: 65  EEGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARPTVLVINKIDGT 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKL 369
              T   +            S+   +G++EL+ ++ + L  +    
Sbjct: 125 DEETVRSEFARYGFSDVVALSAAHRQGIDELLEEVAARLPEEGSGE 170


>gi|304387839|ref|ZP_07370013.1| ribosome-associated GTPase EngA [Neisseria meningitidis ATCC 13091]
 gi|304338104|gb|EFM04240.1| ribosome-associated GTPase EngA [Neisseria meningitidis ATCC 13091]
          Length = 536

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  DI     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 206 LIEDILETFPEPEAEEADAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 265

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 266 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 325

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 326 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 385

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 386 DGLFDSIQAAYNAAMIKMPTPKITR 410



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 56  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKNIDFIFI---------G 326
           D  +  E  K+T   V+ AD ++ L +  +      K I+         +         G
Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 175

Query: 327 TKSDLYSTYTE---EYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
            ++ L + + E      ++IS   G+G+  LI  I         + 
Sbjct: 176 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETFPEPEAEE 221


>gi|149277444|ref|ZP_01883585.1| GTP-binding protein EngA [Pedobacter sp. BAL39]
 gi|149231677|gb|EDM37055.1| GTP-binding protein EngA [Pedobacter sp. BAL39]
          Length = 433

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 83/204 (40%), Gaps = 31/204 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H       E      KI I+G  N GKSSL NAL  K+  IVT I GTTRD 
Sbjct: 154 DLLDEVIKHFEDIPEEE--NALPKITIVGRPNVGKSSLINALIGKERNIVTPIAGTTRDS 211

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKE- 313
           + I  +  G+     DTAG+R+   +   +E   + RT   +E AD+++L+ +     E 
Sbjct: 212 IHIHYNQFGHEFMFIDTAGLRKKTKVKENIEFYSVMRTIKALEEADVVVLMIDAMEGLES 271

Query: 314 -------ISFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                  ++       + +  K DL                     +T+      S    
Sbjct: 272 QDVNIFHLAEKNKKGIVILVNKWDLVEKDSKTIKIFEDQIRQKLQPFTDVPIIFTSVLNK 331

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           + + + I     +  N+ KK+P S
Sbjct: 332 QRIFQAIETSLEVFKNRGKKVPTS 355



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           I I+G  N GKS+LFN L +   AIV D  G TRD      +       + DT G +  +
Sbjct: 5   IAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYGSAEWTDKQFTVIDTGGYVANS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD-- 330
           +D+ E    ++  + +E A ++L + ++        +   ++          +  K D  
Sbjct: 65  EDVFEAAIREQVVIAIEEATVLLFMVDVVTGITDLDDDIAQLLRRSKKPVFIVVNKVDNT 124

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  ++  +     + ISS TG G  +L++++     +  ++   
Sbjct: 125 QLQNDASVFYGFGLGEIYPISSMTGSGTGDLLDEVIKHFEDIPEEENA 172


>gi|261340815|ref|ZP_05968673.1| ribosome-associated GTPase EngA [Enterobacter cancerogenus ATCC
           35316]
 gi|288317241|gb|EFC56179.1| ribosome-associated GTPase EngA [Enterobacter cancerogenus ATCC
           35316]
          Length = 491

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 204 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREFVLIDTAGVRK 263

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D+VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 264 RGKITDVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 323

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S    E                  H IS+  G G+  L   ++    +  ++   +
Sbjct: 324 WDGLSNEVREQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRQSTA 383

Query: 373 IPSH 376
           + + 
Sbjct: 384 MLTR 387



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADSAIAKHLRSREKPTFLVANKTDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 ADQAVADFWSLGLGNIYPIAASHGRGVTSLLETV 158


>gi|34762556|ref|ZP_00143552.1| GTP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887777|gb|EAA24850.1| GTP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 440

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 35/241 (14%)

Query: 132 ADLISSETEMQRRLSMEGMS------------GELSSLYGQWIDKLTHIRSFIEADLD-- 177
            D + ++ + Q  ++M                  L       + K           +D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124

Query: 178 FSEEEDVQNFS----------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           F +++DV +F           S E   ++  + + +   I +    E   +  K+ ++G 
Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVEIIGKMDFPEEDEDVLKLAVIGK 184

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIV 284
            NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR     ++ +
Sbjct: 185 PNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRKSKVEESL 244

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           E   + R    ++ AD+ +L+ +              I+  +    I +  K DL     
Sbjct: 245 EYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIVMNKWDLVENKN 304

Query: 337 E 337
            
Sbjct: 305 N 305



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +       I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSSSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D +   F G G E L+
Sbjct: 123 -NFFEQQDDVY-DFYGLGFEYLV 143


>gi|313886089|ref|ZP_07819824.1| ribosome biogenesis GTPase Der [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924435|gb|EFR35209.1| ribosome biogenesis GTPase Der [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 436

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIVT+  GTTRD     +        I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTRSRQAIVTEEAGTTRDRQYGHVTWCERTFSIVDTGGWVLRS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFP---KNIDFIFIGTKSDLY 332
           DD+ E+E  K+  + VE ADLIL + +I     +   EI+      N   I +  K+D +
Sbjct: 65  DDVFEEEINKQVRIAVEEADLILFVVDILNGVTDLDDEIALMLRQTNKPVILVANKADNF 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + + +  +           IS+  G    +L++ I  +L  +    P 
Sbjct: 125 TQHNDAAEFYSLGIGDPYPISAINGSSTGDLLDHILELLPKEGNHEPL 172



 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 105/271 (38%), Gaps = 32/271 (11%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           + D+++  T++   +++  M  + +       +K  +     +A   +S         S 
Sbjct: 89  VVDILNGVTDLDDEIAL--MLRQTNKPVILVANKADNFTQHNDAAEFYSLGIGDPYPISA 146

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
              +    L + I   + +    E +    +  I+G  NAGKSSL NAL  ++  IVTD 
Sbjct: 147 INGSSTGDLLDHILELLPKEGNHEPLLELPRFAIVGRPNAGKSSLLNALIGEERNIVTDR 206

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE 307
            GTTRD +  + D       + DTAGIR+   +    E   + R    +ENAD+ ++L +
Sbjct: 207 SGTTRDSIFAEYDKFNQHFYLVDTAGIRKKGKVNEDLEYYSVIRAIRAIENADVCIMLID 266

Query: 308 INSKKEISFP--------KNIDFIFIGTKSDL-------------------YSTYTEEYD 340
                E             N   +    K DL                   ++ +T+   
Sbjct: 267 ATRGIEAQDANIFRVIQRNNKGLVVCVNKWDLVEDKSMPVQRTMEEAIRARFAPFTDFPI 326

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             IS+   + + ++I   + +   +  ++P 
Sbjct: 327 IFISALNKQRILKVIETAQHVYDMRSTRIPT 357


>gi|332300532|ref|YP_004442453.1| GTP-binding protein engA [Porphyromonas asaccharolytica DSM 20707]
 gi|332177595|gb|AEE13285.1| GTP-binding protein engA [Porphyromonas asaccharolytica DSM 20707]
          Length = 436

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIVT+  GTTRD     +        I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTRSRQAIVTEEAGTTRDRQYGHVTWCERTFSIVDTGGWVLRS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFP---KNIDFIFIGTKSDLY 332
           DD+ E+E  K+  + VE ADLIL + +I     +   EI+      N   I +  K+D +
Sbjct: 65  DDVFEEEINKQVRIAVEEADLILFVVDILNGVTDLDDEIALMLRQTNKPVILVANKADNF 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + + +  +           IS+  G    +L++ I  +L  +    P 
Sbjct: 125 TQHNDAAEFYTLGIGDPYPISAINGSSTGDLLDHILELLPKEGNHEPL 172



 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 105/271 (38%), Gaps = 32/271 (11%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           + D+++  T++   +++  M  + +       +K  +     +A   ++         S 
Sbjct: 89  VVDILNGVTDLDDEIAL--MLRQTNKPVILVANKADNFTQHNDAAEFYTLGIGDPYPISA 146

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
              +    L + I   + +    E +    +  I+G  NAGKSSL NAL  ++  IVTD 
Sbjct: 147 INGSSTGDLLDHILELLPKEGNHEPLLELPRFAIVGRPNAGKSSLLNALIGEERNIVTDR 206

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE 307
            GTTRD +  + D       + DTAGIR+   +    E   + R    +ENAD+ ++L +
Sbjct: 207 SGTTRDSIFAEYDKFNQHFYLVDTAGIRKKGKVNEDLEYYSVIRAIRAIENADVCIMLID 266

Query: 308 INSKKEISFP--------KNIDFIFIGTKSDL-------------------YSTYTEEYD 340
                E             N   +    K DL                   ++ +T+   
Sbjct: 267 ATRGIEAQDANIFRVIQRNNKGLVVCVNKWDLVEDKSMPVQRTMEEAIRARFAPFTDFPI 326

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             IS+   + + ++I   + +   +  ++P 
Sbjct: 327 IFISALNKQRILKVIETAQHVYDMRSTRIPT 357


>gi|329297578|ref|ZP_08254914.1| GTP-binding protein Der [Plautia stali symbiont]
          Length = 496

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 208 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDDREYILIDTAGVRK 267

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 268 RGKITDTVEKFSVIKTLQAIEDANVVMLVIDARAGISDQDLSLLGFILNSGRSLVIVVNK 327

Query: 329 SD-LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D L     +E                 H IS+  G G+  L   +        K++  S
Sbjct: 328 WDGLSQEIKDEVKDTLDFRLGFIDFARVHFISALHGSGVGNLFESVTEAYDCSTKRVNTS 387

Query: 373 IPSH 376
           + + 
Sbjct: 388 MLTR 391



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + VE    +++ L +E AD++L L +       + ++I+     ++    F+  K+D   
Sbjct: 65  EGVENRMAEQSLLAIEEADVVLFLVDARAGVMPADQQIANHLRSRDKATFFVANKTDGLD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN 356
                 D         H I++  G G+  L+ 
Sbjct: 125 PDAAVLDFYALGLGEIHPIAASHGRGVTSLLE 156


>gi|299538553|ref|ZP_07051836.1| GTP-binding protein EngA [Lysinibacillus fusiformis ZC1]
 gi|298726140|gb|EFI66732.1| GTP-binding protein EngA [Lysinibacillus fusiformis ZC1]
          Length = 436

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 100/249 (40%), Gaps = 34/249 (13%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I  +T+    L++  +            + +    +     L F 
Sbjct: 91  NGREGVTAADEQVAKILYKTKKPVVLAVNKIDNP------DMREMIYDFYA-----LGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E        S      +  L ++ + H  +    +   +  K  ++G  N GKSSL NA 
Sbjct: 140 E----PWPISGSHGLGLGDLLDECAKHFPKEDEEQYGDDVIKFSLIGRPNVGKSSLVNAF 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV++I GTTRD +      +G    I DTAG+R+   I    EK  + R    +
Sbjct: 196 LGQERVIVSNIAGTTRDAIDTPYAYDGQEYVIIDTAGMRKKGKIYETTEKYSVLRALRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           E +D++L++  +N+++ I          +       I +  K D      E+ +  ++ F
Sbjct: 256 ERSDVVLVV--LNAEEGIQEQDKKIAGYAHEAGKAVIIVVNKWDAI----EKDEKTMNVF 309

Query: 347 TGEGLEELI 355
           T +  E  +
Sbjct: 310 TQQIREHFL 318



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSD--- 330
           +   ++  ++  + ++ AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLEQIRQQAEIAIDEADVIIFMTNGREGVTAADEQVAKILYKTKKPVVLAVNKIDNPD 125

Query: 331 ----LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKK 368
               +Y  Y   +      S   G GL +L+++       + ++
Sbjct: 126 MREMIYDFYALGFGEPWPISGSHGLGLGDLLDECAKHFPKEDEE 169


>gi|290475995|ref|YP_003468891.1| GTP-binding protein, essential for cell growth [Xenorhabdus
           bovienii SS-2004]
 gi|289175324|emb|CBJ82127.1| GTP-binding protein, essential for cell growth [Xenorhabdus
           bovienii SS-2004]
          Length = 496

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 210 LKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYILIDTAGVRK 269

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A+++LL+ +     S +++S            +    K
Sbjct: 270 RGKVTETVEKFSVIKTLQAIEDANVVLLIVDAREGVSDQDLSLLGFILNSGRSLVIAVNK 329

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S    ++                 H IS+  G G+  L + I     +   ++  S
Sbjct: 330 WDGMSQEDRDHVKDMLDLRLGFVDFARVHFISALHGSGVGNLFDSILEAYESATHRVSTS 389

Query: 373 IPSH 376
           + + 
Sbjct: 390 MLTR 393



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNID-----FIFIGTKSDLYS 333
           D VE     ++ + +E AD++L + +  S     + +  K++         +  K+D   
Sbjct: 65  DGVETHMAAQSLMAIEEADIVLFMVDARSGMMPADHAIAKHLRSREKATFLVANKTDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
           T T   +           I++  G G+ +LI  +
Sbjct: 125 TDTAIPEFYSLGLGDIYSIAASHGRGVTQLIEHV 158


>gi|167768008|ref|ZP_02440061.1| hypothetical protein CLOSS21_02551 [Clostridium sp. SS2/1]
 gi|317498398|ref|ZP_07956693.1| ribosome-associated GTPase EngA [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167710337|gb|EDS20916.1| hypothetical protein CLOSS21_02551 [Clostridium sp. SS2/1]
 gi|291561010|emb|CBL39810.1| ribosome-associated GTPase EngA [butyrate-producing bacterium
           SSC/2]
 gi|316894292|gb|EFV16479.1| ribosome-associated GTPase EngA [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 440

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 15/168 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H +     E      ++ I+G  NAGKSSL N L  +D  IV+DI GTTRD 
Sbjct: 156 DLLDEVLVHCNPQDADEKEDERPRVAIIGKPNAGKSSLINKLLGEDRLIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +   G      DTAG+R+   +   +E+  + RT   VE  D+ +L+ +       
Sbjct: 216 IDTTVKRNGKEYVFIDTAGLRKKARVKEDIERYSVIRTVAAVERCDVAILVIDAEEGITE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
                  I+  +    I    K DL     E+ D  I  FT +  E L
Sbjct: 276 QDAKIAGIAHERGKGMIIAVNKWDLI----EKNDKTIYKFTNQVREVL 319



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 19/156 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFNALA + ++IV D PG TRD +  D+    Y   + DT GI  ++
Sbjct: 6   IAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVTWLNYQFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D++      +  + +E AD+I+ L ++            ++        +    K D Y
Sbjct: 66  GDLLLSHMRGQAEIAMETADVIIFLTDVRQGLVDADYQVADMLRRSGKPIVLAVNKVDNY 125

Query: 333 STYTEE----------YDHLISSFTGEGLEELINKI 358
             +  +              +S+ +  G  +L++++
Sbjct: 126 EKFVLDTYEFYNLGLGTPFPVSANSKIGFGDLLDEV 161


>gi|23099252|ref|NP_692718.1| GTP-binding protein EngA [Oceanobacillus iheyensis HTE831]
 gi|37999696|sp|Q8EQA8|DER_OCEIH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|22777481|dbj|BAC13753.1| GTP binding protein [Oceanobacillus iheyensis HTE831]
          Length = 436

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 85/207 (41%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H       E   +     ++G  N GKSSL NAL  +D  IV++I GTTRD 
Sbjct: 154 DLLDEVVGHFPNESEEEKDEDTIYFSLIGRPNVGKSSLVNALLNEDRVIVSEIEGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   L  +     I DTAG+R+   +    EK  + R    +E +D++L+L +  +    
Sbjct: 214 IDTKLHRDDQDFVIIDTAGMRKRGKVYESTEKYSVLRALRAIERSDVVLVLIDAETGIRE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYS---TYTEEYDHLI---------------SSFTG 348
                   +       + +  K D         +E++  I               S+ T 
Sbjct: 274 QDKRIAGYAHDAGRAIVIVVNKWDTVDSNEKAMKEFEKNIRAHFQYLDYAPVVFLSAKTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + +  L+  IK    +  K++P ++ +
Sbjct: 334 KRMHTLVPAIKLASESHTKRIPTNVLN 360



 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN L  + ++IV DIPG TRD +  + +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRLVGERISIVEDIPGVTRDRIYANAEWLNHTFNIIDTGGIELGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD--- 330
           + +  +  ++  + ++ AD+I+ L           +   ++ F  N   +    K D   
Sbjct: 66  EPLLVQMRQQAEIAIDEADVIVFLLNGKEGITSADDEVAKLLFKSNKPVVVGVNKMDNPQ 125

Query: 331 ----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKL 369
               +Y  Y+  +     IS   G GL +L++++     N+ ++ 
Sbjct: 126 MHETIYEYYSLGFGQPFPISGTHGLGLGDLLDEVVGHFPNESEEE 170


>gi|150390617|ref|YP_001320666.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF]
 gi|166920095|sp|A6TS39|DER_ALKMQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|149950479|gb|ABR49007.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF]
          Length = 440

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++I  H  + K      +  K+ I+G  N GKSS+ N++  ++  IV+DI GTTRD 
Sbjct: 155 DLLDEIVKHFPENKGVIYDDDVIKVAIIGKPNVGKSSIVNSILGENRVIVSDIAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +    +       + DTAG+R    I   +EK  + R+   VE AD+ LL+ +       
Sbjct: 215 IDTPFNDGEDQYVLIDTAGLRRKSKIKENIEKYSVIRSIAAVERADVCLLVIDATEGVTE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   S       I +  K DL   
Sbjct: 275 QDTKVAGFSHENGKGTIIVVNKWDLIEK 302



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +    ++IV D PG TRD +  +++   +   + DT GI  +T
Sbjct: 6   VAIVGRPNVGKSTLFNKIIGHRISIVEDQPGVTRDRIYAEVEWLDHYFTLIDTGGIDADT 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           ++I+  +  ++  L +E AD+ + + +  +          E+    +   +    K D  
Sbjct: 66  EEIIPAQMREQAQLAIETADVTVFMVDGRAGLTTSDREVAEMLRKSHKPVLLAMNKVDTS 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
           +     Y+           ISS  G G+ +L+++I       
Sbjct: 126 NRLDSFYEFYELGIGDPIEISSAQGLGIGDLLDEIVKHFPEN 167


>gi|325135934|gb|EGC58544.1| GTP-binding protein [Neisseria meningitidis M0579]
          Length = 536

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  DI     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 206 LIEDILETFPEPEAEEADAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 265

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 266 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 325

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 326 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 385

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 386 DGLFDSIQAAYNAAMIKMPTPKITR 410



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 56  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKNIDFIFI---------G 326
           D  +  E  K+T   V+ AD ++ L +  +      K I+         +         G
Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 175

Query: 327 TKSDLYSTYTE---EYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
            ++ L + + E      ++IS   G+G+  LI  I         + 
Sbjct: 176 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETFPEPEAEE 221


>gi|228470615|ref|ZP_04055472.1| ribosome-associated GTPase EngA [Porphyromonas uenonis 60-3]
 gi|228307742|gb|EEK16718.1| ribosome-associated GTPase EngA [Porphyromonas uenonis 60-3]
          Length = 436

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIVTD  GTTRD     +        I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTRSRQAIVTDEAGTTRDRQYGHVTWCERTFSIVDTGGWVLRS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNI---DFIFIGTKSDLY 332
           DD+ E+E  K+  + VE ADLIL + +I     +   EI+          I +  K+D +
Sbjct: 65  DDVFEEEINKQVRIAVEEADLILFVVDILNGVTDLDDEIALMLRQTSKPVILVANKADNF 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + + +  +         H IS+  G    +L++ I  +L  +    P 
Sbjct: 125 TQHNDAAEFYSLGLGDPHPISAINGSSTGDLLDHILGLLPKEGNHEPL 172



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 105/271 (38%), Gaps = 32/271 (11%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           + D+++  T++   +++  M  + S       +K  +     +A   +S      +  S 
Sbjct: 89  VVDILNGVTDLDDEIAL--MLRQTSKPVILVANKADNFTQHNDAAEFYSLGLGDPHPISA 146

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
              +    L + I   + +    E +    +  I+G  NAGKSSL NAL  ++  IVTD 
Sbjct: 147 INGSSTGDLLDHILGLLPKEGNHEPLLELPRFAIVGRPNAGKSSLLNALIGEERNIVTDR 206

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE 307
            GTTRD +  + D       + DTAGIR+   +    E   + R    +ENAD+ ++L +
Sbjct: 207 SGTTRDSIFAEYDKYNQHFYLVDTAGIRKKGKVNEDLEYYSVIRAIRAIENADVCIMLID 266

Query: 308 INSKKEISFPKNIDFI--------FIGTKSDL-------------------YSTYTEEYD 340
                E         I            K DL                   ++ +T+   
Sbjct: 267 ATRGIEAQDANIFRVIQRNSKGLVVCVNKWDLVEDKSLPVQRTMEEAIRARFAPFTDFPI 326

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             IS+   + + ++I   + +   +  ++P 
Sbjct: 327 IFISALNKQRILKVIEMAQHVYDMRSTRIPT 357


>gi|161502327|ref|YP_001569439.1| GTP-binding protein EngA [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863674|gb|ABX20297.1| hypothetical protein SARI_00360 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 504

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 217 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 276

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 277 RGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 336

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 337 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 396

Query: 373 IPSH 376
           + + 
Sbjct: 397 LLTR 400



 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 17/171 (9%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
             +S   L E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++
Sbjct: 2   RALSDDFLNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEV 61

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-- 319
           EG      DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+  
Sbjct: 62  EGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLR 121

Query: 320 ---IDFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
                   +  K+D         D           I++  G G+  L+  +
Sbjct: 122 SREKPTFLVANKTDGLDPDQAVVDFYSLGLGDIYPIAASHGRGVLSLLEHV 172


>gi|254521460|ref|ZP_05133515.1| GTP-binding protein [Stenotrophomonas sp. SKA14]
 gi|219719051|gb|EED37576.1| GTP-binding protein [Stenotrophomonas sp. SKA14]
          Length = 465

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 102/255 (40%), Gaps = 41/255 (16%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL---------- 197
              +  +      W+ KL+     +   +D ++E+ V++  ++    ++L          
Sbjct: 93  REGTSAMDDEILAWLRKLSRPTLLLINKIDGTDEDSVRSEFARYGFGEMLTVSAAHRQGL 152

Query: 198 -FLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             L +++   + +   GE + N     +I  +G  N GKS+L N +  ++  I +D+PGT
Sbjct: 153 DDLLDEVIQRLPEEGSGEELDNDPNRIRIAFVGRPNVGKSTLVNRILGEERMIASDVPGT 212

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           TRD + +DL+ +G   ++ DTAG+R     D++VEK  + +T   +E   + +L+ +   
Sbjct: 213 TRDSIAVDLERDGREYRLIDTAGLRRRSRVDEVVEKFSVVKTMQSIEQCQVAVLMLDATE 272

Query: 311 K--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSF 346
                               +    K D  + Y  E                    IS+ 
Sbjct: 273 GVTDQDATVLGAVLDAGRALVIAINKWDGLTEYQREQAETLLSLKLGFVPWAESVRISAK 332

Query: 347 TGEGLEELINKIKSI 361
            G GL EL   +   
Sbjct: 333 HGSGLRELFRAVHRA 347



 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 73/174 (41%), Gaps = 18/174 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G  N GKS++FNAL +   A+V D PG TRD       L+      + DT GI E 
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEDNHFLVVDTGGIAEE 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSD-- 330
           ++ +     ++       ADLIL + +          + +++ +      + +  K D  
Sbjct: 65  EEGLAGATTRQARAAAAEADLILFVVDAREGTSAMDDEILAWLRKLSRPTLLLINKIDGT 124

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                   ++ Y       +S+   +GL++L++++   L  +          ++
Sbjct: 125 DEDSVRSEFARYGFGEMLTVSAAHRQGLDDLLDEVIQRLPEEGSGEELDNDPNR 178


>gi|292489043|ref|YP_003531930.1| GTP-binding protein engA [Erwinia amylovora CFBP1430]
 gi|292900172|ref|YP_003539541.1| GTP-binding protein [Erwinia amylovora ATCC 49946]
 gi|291200020|emb|CBJ47145.1| GTP-binding protein [Erwinia amylovora ATCC 49946]
 gi|291554477|emb|CBA22001.1| GTP-binding protein engA [Erwinia amylovora CFBP1430]
          Length = 499

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 27/190 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 211 IKLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRK 270

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A++++L+ + +   S +++S            + +  K
Sbjct: 271 RGKVTETVEKFSVIKTLKAIEDANVVMLVIDAHEGISDQDLSLLGFILNSGRSLVIVVNK 330

Query: 329 SD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D     +     E  D           H IS+  G G+  L   +        +++  S
Sbjct: 331 WDGLSQEVRDEVKEALDYRLGFIDFARIHFISALHGSGVGNLFESVTEAYDCSTRRVNTS 390

Query: 373 IPSHKRHLYH 382
           + +   H+  
Sbjct: 391 MLTRIMHMAA 400



 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGNE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADTAIAKHLRARQKPTFIVANKTDGLD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN 356
             +   D         H I++  G G+  L+ 
Sbjct: 125 ADSAVVDFWSLGLGEIHPIAASHGRGVTSLLE 156


>gi|319892465|ref|YP_004149340.1| GTP-binding protein EngA [Staphylococcus pseudintermedius HKU10-03]
 gi|317162161|gb|ADV05704.1| GTP-binding protein EngA [Staphylococcus pseudintermedius HKU10-03]
 gi|323464432|gb|ADX76585.1| GTP-binding protein EngA [Staphylococcus pseudintermedius ED99]
          Length = 436

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 11/144 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L  +++ H  +        +  ++ ++G  N GKSSL NA+  ++  IV++I GTTRD 
Sbjct: 154 DLLEEVAKHFKKDTSDPYDDDTIRLSLIGRPNVGKSSLINAILGEERVIVSNIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +      EG    + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 IDTVYSYEGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVLDAEQGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSD 330
                   +  +    + +  K D
Sbjct: 274 QDKRVAGYAHEEGKAIVIVVNKWD 297



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNVIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + ++ AD+I+ +  +            +I +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFMVNVREGVTQNDELVAQILYKSKKPVVLAVNKVDNPD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKK 368
              + YD            S   G GL +L+ ++          
Sbjct: 126 MRNDIYDFYSLGFGEPFPLSGSHGLGLGDLLEEVAKHFKKDTSD 169


>gi|260496851|ref|ZP_05815971.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_33]
 gi|260196593|gb|EEW94120.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_33]
          Length = 440

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 35/241 (14%)

Query: 132 ADLISSETEMQRRLSMEGMS------------GELSSLYGQWIDKLTHIRSFIEADLD-- 177
            D + ++ + Q  ++M                  L       + K           +D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124

Query: 178 FSEEEDVQNFS----------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           F +++DV +F           S E   ++  + + +   I +    E   +  K+ ++G 
Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVDIIGKMDFPEEDEDVLKLAVIGK 184

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIV 284
            NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR     ++ +
Sbjct: 185 PNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRKSKVEESL 244

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           E   + R    ++ AD+ +L+ +              I+  +    I +  K DL     
Sbjct: 245 EYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIVMNKWDLVENKN 304

Query: 337 E 337
            
Sbjct: 305 N 305



 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D +   F G G E L+
Sbjct: 123 -NFFEQQDDVY-DFYGLGFEYLV 143


>gi|170723482|ref|YP_001751170.1| GTP-binding protein EngA [Pseudomonas putida W619]
 gi|229784138|sp|B1JDV4|DER_PSEPW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169761485|gb|ACA74801.1| small GTP-binding protein [Pseudomonas putida W619]
          Length = 487

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 32/205 (15%)

Query: 200 KNDISSHISQGKLGEII-----RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +  +   +++G+    I     ++G KI I+G  N GKS+L N +  ++  +V D PGTT
Sbjct: 168 EEALDQEVAEGEEAVRIPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDQPGTT 227

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK 311
           RD + I  + +       DTAG+R+   I    EK  + +T   +++A++++ + +    
Sbjct: 228 RDSIYIPFERDNEKYTFIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREG 287

Query: 312 --------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFT 347
                      +       +    K D   +   +Y                 H IS+  
Sbjct: 288 VVDHDLNLLGFALEAGRAIVIALNKWDGMESGERDYVKTELERRLFFVDFADIHFISALH 347

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
           G G+  L   +++   +   + P S
Sbjct: 348 GTGVGHLYKSVQAAFKSAVTRWPTS 372



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L K   AIV D+ G TRD    D   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ + +E AD +L L +  +          E    +N   I +  K D
Sbjct: 65  VGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKSAILVANKID 121


>gi|159028658|emb|CAO88129.1| engA [Microcystis aeruginosa PCC 7806]
          Length = 452

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 13/149 (8%)

Query: 201 NDISSHISQGKLGEII--RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
             + + I     G  I      K+ I+G  N GKSSL NAL  +  AIV+ I GTTRD +
Sbjct: 156 ELLDALIKYLPPGAEIPENEEIKVAIIGRPNVGKSSLLNALTGQQRAIVSPISGTTRDSI 215

Query: 259 TIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI---NSKK 312
              ++ EG + ++ DTAGIR     D   E   I R F  +  +D++L + ++    +++
Sbjct: 216 DTLIEREGQVYRLIDTAGIRRKKNVDYGAEFFSINRAFKAIRRSDVVLFVIDVLDGVTEQ 275

Query: 313 EISFP-----KNIDFIFIGTKSDLYSTYT 336
           ++        +    + +  K D     T
Sbjct: 276 DLKLAGRIIEEGRAVVLVVNKWDAVEKDT 304



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 19/165 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +A    AIV D PG TRD             +I DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRIAGDQQAIVFDQPGITRDRTYQPAFWCDRDFQIVDTGGLVFND 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLY 332
           D        ++  + +  A + + + +  +      +EI+     +N+  +    K +  
Sbjct: 66  DSEFLPLIREQALIALAEASVAIFVVDGQAGITAGDREIAAWLRQQNVPILLAVNKCESV 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFK 367
                +               S+  G G  EL++ +   L    +
Sbjct: 126 EQGILQATEFWELAIGEPFPISAIHGSGTGELLDALIKYLPPGAE 170


>gi|34541718|ref|NP_906197.1| GTP-binding protein EngA [Porphyromonas gingivalis W83]
 gi|188994055|ref|YP_001928307.1| GTP-binding protein EngA [Porphyromonas gingivalis ATCC 33277]
 gi|41017000|sp|Q7MT48|DER_PORGI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|34398036|gb|AAQ67096.1| GTP-binding protein, Era/ThdF family [Porphyromonas gingivalis W83]
 gi|188593735|dbj|BAG32710.1| GTP-binding protein EngA [Porphyromonas gingivalis ATCC 33277]
          Length = 437

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 18/172 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L +   AIV +  GTTRD     +   G    I DT G +
Sbjct: 2   GALVAIVGRPNVGKSTLFNRLTQSRQAIVAEEAGTTRDRQYGRVHWNGREFSIVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             ++D+ E+E  K+ ++ VE AD++L + +  +          EI        I +  K 
Sbjct: 62  VNSEDVFEEEINKQVYIAVEEADVVLFVADNQTGVTSLDEQVAEILRRSKKPVIVVANKV 121

Query: 330 D---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D          + ++     + I++ +G G  +L++++  +L  +  +    
Sbjct: 122 DNTEDHYSASEFYSFGLGDPYCIAAVSGSGTGDLLDRVMELLPAENGQSDLD 173



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 12/171 (7%)

Query: 198 FLKNDISSHI-SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + +   + ++    ++     +I I+G  NAGKSSL NA   +D  IVTDI GTTRD
Sbjct: 154 DLLDRVMELLPAENGQSDLDETLPRIAIVGRPNAGKSSLLNAFIGEDRHIVTDIAGTTRD 213

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
            +    +  G    + DTAGIR+   +    E   + R+   +EN+D+ +L+ +     E
Sbjct: 214 SIYTKYNKFGLNFYLVDTAGIRKRGKVNEDLEYYSVIRSIRAIENSDVCVLMLDATRGVE 273

Query: 314 --------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                   I    +   +    K DL    ++       +   +      +
Sbjct: 274 SQDLNIFQIIQRNSKGLVVCINKWDLVEDKSQAVIKTFENAIRQRFAPFTD 324


>gi|315038199|ref|YP_004031767.1| GTP-binding protein EngA [Lactobacillus amylovorus GRL 1112]
 gi|325956651|ref|YP_004292063.1| GTP-binding protein Der [Lactobacillus acidophilus 30SC]
 gi|312276332|gb|ADQ58972.1| GTP-binding protein EngA [Lactobacillus amylovorus GRL 1112]
 gi|325333216|gb|ADZ07124.1| GTP-binding protein Der [Lactobacillus acidophilus 30SC]
 gi|327183476|gb|AEA31923.1| GTP-binding protein Der [Lactobacillus amylovorus GRL 1118]
          Length = 435

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD      +  G+   + DT GI    
Sbjct: 6   VAIVGRPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
             +E+E   +  + +E AD+I++       + +++ +   + +      I    K+D   
Sbjct: 66  GKIEEEIRAQAEIAIEEADVIVMLTSVVNHMTDLDERVAHLLYRTQKPVILAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G+ +L++ I              + 
Sbjct: 126 QRNDIYDFYSLGLGDPIPVSSSHGTGIGDLLDAIVDKFPEDKDTQAEDVI 175



 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 110/292 (37%), Gaps = 47/292 (16%)

Query: 131 LADLISSETEMQRRLS--------MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           + + I ++ E+    +        +     +L       + +            D  E+ 
Sbjct: 68  IEEEIRAQAEIAIEEADVIVMLTSVVNHMTDLDERVAHLLYRTQKPVILAVNKADNPEQR 127

Query: 183 DVQNFSSKEVLNDIL--------FLKNDISSHISQGKLGEIIR--NGYKIVILGHSNAGK 232
           +         L D +         + + + + + +    +  +  +     ++G  N GK
Sbjct: 128 NDIYDFYSLGLGDPIPVSSSHGTGIGDLLDAIVDKFPEDKDTQAEDVISFSVIGRPNVGK 187

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGI 289
           SS+ N L  +D  IV +  GTTRD +      +G   K+ DTAGIR    +    EK  +
Sbjct: 188 SSIVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGVKFKVVDTAGIRRRGKVYEKTEKYSV 247

Query: 290 KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST------- 334
            R    +E +D++LL+ + ++            +       I +  K DL          
Sbjct: 248 LRAMSAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLPKKNSTSAKE 307

Query: 335 ----YTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                 EE+ +        +S+ TG+ L+++ + +K +  N+ +++  S+ +
Sbjct: 308 FEREIKEEFQYLDYAPILFVSAKTGQRLDQIPSMVKEVYDNQNQRIQSSVLN 359


>gi|237743522|ref|ZP_04574003.1| GTP-binding protein [Fusobacterium sp. 7_1]
 gi|229433301|gb|EEO43513.1| GTP-binding protein [Fusobacterium sp. 7_1]
          Length = 440

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 35/241 (14%)

Query: 132 ADLISSETEMQRRLSMEGMS------------GELSSLYGQWIDKLTHIRSFIEADLD-- 177
            D + ++ + Q  ++M                  L       + K           +D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124

Query: 178 FSEEEDVQNFS----------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           F +++DV +F           S E   ++  + + +   I +    E   +  K+ ++G 
Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVDIIGKMDFPEEDEDVLKLAVIGK 184

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIV 284
            NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR     ++ +
Sbjct: 185 PNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRKSKVEESL 244

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           E   + R    ++ AD+ +L+ +              I+  +    I +  K DL     
Sbjct: 245 EYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIVMNKWDLVENKN 304

Query: 337 E 337
            
Sbjct: 305 N 305



 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D +   F G G E L+
Sbjct: 123 -NFFEQQDDVY-DFYGLGFEYLV 143


>gi|313497226|gb|ADR58592.1| EngA [Pseudomonas putida BIRD-1]
          Length = 487

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 32/204 (15%)

Query: 201 NDISSHISQGKLGEII-----RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
             +   +++G+    I     ++G KI I+G  N GKS+L N +  ++  +V D PGTTR
Sbjct: 169 EALEQDVAEGEEAVRIPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDEPGTTR 228

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK- 311
           D + I  + +G      DTAG+R+   I    EK  + +T   +++A++++ + +     
Sbjct: 229 DSIYIPFERDGEKYTFIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGV 288

Query: 312 -------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTG 348
                     +       +    K D        Y                 H IS+  G
Sbjct: 289 VDHDLNLLGFALEAGRAIVIALNKWDGMEPGERAYVKTELERRLFFVDFADIHFISALHG 348

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
            G+  L   +++   +   + P S
Sbjct: 349 TGVGNLYKSVQAAFQSAVTRWPTS 372



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L K   AIV D+ G TRD    D   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ + +E AD +L L +  +          E    +N   I +  K D
Sbjct: 65  VGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKAAILVANKID 121


>gi|325144121|gb|EGC66428.1| GTP-binding protein [Neisseria meningitidis M01-240013]
          Length = 536

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  +I  +  + ++ E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 206 LIEEILENFPEPEVEEADAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 265

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 266 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 325

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 326 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 385

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 386 DGLFDSIQAAYNAAMIKMPTPKITR 410



 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 18/157 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 56  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKNIDFIFI---------G 326
           D  +  E  K+T   V+ AD ++ L +  +      K I+         +         G
Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 175

Query: 327 TKSDLYSTYTE---EYDHLISSFTGEGLEELINKIKS 360
            ++ L + + E      ++IS   G+G+  LI +I  
Sbjct: 176 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEEILE 212


>gi|296328064|ref|ZP_06870598.1| ribosome-associated GTPase EngA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154840|gb|EFG95623.1| ribosome-associated GTPase EngA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 440

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 93/241 (38%), Gaps = 35/241 (14%)

Query: 132 ADLISSETEMQRRLSMEGMS------------GELSSLYGQWIDKLTHIRSFIEADLD-- 177
            D + ++ + Q  ++M                  L       + K           +D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124

Query: 178 FSEEEDVQNFS----------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           F +++DV +F           S E   ++  + + +   I +    E      K+ ++G 
Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVDIIGKMDFPEEDEEVLKLAVIGK 184

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIV 284
            NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR     ++ +
Sbjct: 185 PNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRKSKVEESL 244

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           E   + R    ++ AD+ +L+ +              I+  +    I +  K DL     
Sbjct: 245 EYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAHEELKPIIIVMNKWDLVENKN 304

Query: 337 E 337
            
Sbjct: 305 N 305



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D +   F G G E L+
Sbjct: 123 -NFFEQQDDVY-DFYGLGFEYLV 143


>gi|229824833|ref|ZP_04450902.1| hypothetical protein GCWU000182_00182 [Abiotrophia defectiva ATCC
           49176]
 gi|229790836|gb|EEP26950.1| hypothetical protein GCWU000182_00182 [Abiotrophia defectiva ATCC
           49176]
          Length = 445

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 34/220 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++  H  +        +  KI I+G  N GKSS+ N L  ++  IV+D+ GTTRD 
Sbjct: 155 DMLDEVIKHFPEDSPEAEEDDTPKIAIIGKPNVGKSSIINRLLGENRVIVSDVAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +   G    + DTAGIR    I   +E   I RT   VE AD+++L+ +       
Sbjct: 215 IDTRIRRNGKDYIMIDTAGIRRKSRIKEDIEYYSIVRTVSAVERADIVVLVIDATEGITE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------------------ISSFTG 348
                  I+  +    I    K DL     +  +                    IS+ +G
Sbjct: 275 QDAKIAGIAHERGKGIIVAVNKWDLIEKTDKTMNEHTKKLKEILAYMPYAEFLFISAVSG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           + L +L + I  ++     ++   + +       L++ + 
Sbjct: 335 QRLNKLFDLIDVVIQYHTLRVSTGVLN-----DILAEAIA 369



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA  D++IV D PG TRD +  D +       + DT GI  +T
Sbjct: 5   VAIVGRPNVGKSTLFNKLAGSDISIVKDTPGVTRDRIYADAEWLNKAFTMIDTGGIEPDT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTK---- 328
            D++     ++  + ++ AD+I+ + ++        N    +        + +  K    
Sbjct: 65  SDMMLANMREQAEIAIDTADVIIFITDVKTGLVDSDNQVAHMLRKSKKPVVLVVNKVDNP 124

Query: 329 ----SDLYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               +D+Y  Y         ISS    G+ ++++++         +    
Sbjct: 125 VKQQADVYEFYNLGLGEPFPISSVNQTGIGDMLDEVIKHFPEDSPEAEED 174


>gi|167758361|ref|ZP_02430488.1| hypothetical protein CLOSCI_00701 [Clostridium scindens ATCC 35704]
 gi|167664258|gb|EDS08388.1| hypothetical protein CLOSCI_00701 [Clostridium scindens ATCC 35704]
          Length = 442

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + ++ H  +    E      +I I+G  N GKSS+ N L  +   IV+DI GTTRD 
Sbjct: 156 DMLDQVAEHFPEHGREEEEDERPRIAIVGKPNVGKSSIINKLLGEQRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  D+   G      DTAG+R  + I    E+  I RT   VE AD++L++ +       
Sbjct: 216 IDTDIVYNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLIVIDATEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE---EYD---------------HLISSFTG 348
                  I+  +    I +  K D      +   EYD                 +S+ TG
Sbjct: 276 QDAKIAGIAHERGKGIIIVVNKWDAIEKNDKTMREYDSEVRRVLSFMPYAEIMYVSAETG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L +KI  ++ N+  ++   + +
Sbjct: 336 QRLNKLYDKIDMVIENQTLRIATGVLN 362



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 73/161 (45%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA   ++IV D PG TRD +  D++       + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGGMISIVKDTPGVTRDRIYADVNWLDKDFTLIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + ++ AD+I+ + ++            ++        + +  K D +
Sbjct: 66  KDIILSQMREQAQIAIDTADVIIFITDVRQGLVDSDSKVADMLRRSGKPVVLVVNKVDNF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILS 363
             +  +              IS+ +  G+ ++++++     
Sbjct: 126 DKFMPDVYEFYNLGIGDPVPISAASRLGIGDMLDQVAEHFP 166


>gi|254670450|emb|CBA06089.1| putative GTP-binding protein [Neisseria meningitidis alpha153]
          Length = 536

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  +I  +  + ++ E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 206 LIEEILENFPEPEVEEADAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 265

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 266 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 325

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 326 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 385

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 386 DGLFDSIQAAYNAAMIKMPTPKITR 410



 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 18/157 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 56  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKNIDFIFI---------G 326
           D  +  E  K+T   V+ AD ++ L +  +      K I+         +         G
Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 175

Query: 327 TKSDLYSTYTE---EYDHLISSFTGEGLEELINKIKS 360
            ++ L + + E      ++IS   G+G+  LI +I  
Sbjct: 176 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEEILE 212


>gi|300724175|ref|YP_003713492.1| GTP-binding protein [Xenorhabdus nematophila ATCC 19061]
 gi|297630709|emb|CBJ91374.1| GTP-binding protein, essential for cell growth [Xenorhabdus
           nematophila ATCC 19061]
          Length = 496

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 29/206 (14%)

Query: 200 KNDISSHISQGKLGEIIRN--GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           + ++ + I +    E        K+ I+G  N GKS+L N +  ++  +V D+PGTTRD 
Sbjct: 188 QAELDAAIEKEPEEEFDPTTLPLKLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDS 247

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEIN---SK 311
           + I ++ +G    + DTAG+R+     + VEK  + +T   +E+A+++LL+ +     S 
Sbjct: 248 IYIPMERDGREYILIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISD 307

Query: 312 KEISFP-----KNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEG 350
           +++S            +    K D  S   +++                 H IS+  G G
Sbjct: 308 QDLSLLGFILNSGRSLVIAVNKWDGMSQEDKDHVKDMLDLRLGFVDFARVHFISALHGSG 367

Query: 351 LEELINKIKSILSNKFKKLPFSIPSH 376
           +  L   I+    +  +++  S+ + 
Sbjct: 368 VGNLFESIQEAYESATRRVNTSLLTR 393



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 22/202 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNID-----FIFIGTKSDLYS 333
           + VE     ++ + +E AD++L + +  S     + +  K++         +  K+D   
Sbjct: 65  EGVETHMAAQSLMAIEEADIVLFMVDARSGLMPADHAIAKHLRSREKATFLVANKTDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLY 381
             T   +           I++  G G+ +LI ++    S+K +     +     +  +  
Sbjct: 125 IETSVAEFYSLGLGDIYSIAASHGRGVTQLIERVLRPFSDKEETEEVELTEEEANAAYWA 184

Query: 382 HLSQTVRYLEMASLNEKDCGLD 403
            + Q    L+ A   E +   D
Sbjct: 185 EMEQA--ELDAAIEKEPEEEFD 204


>gi|325265768|ref|ZP_08132455.1| ribosome-associated GTPase EngA [Kingella denitrificans ATCC 33394]
 gi|324982751|gb|EGC18376.1| ribosome-associated GTPase EngA [Kingella denitrificans ATCC 33394]
          Length = 489

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 107/292 (36%), Gaps = 36/292 (12%)

Query: 127 EAESLADLISSET---EMQRRLS--MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           EA+++  L+ + T      + ++  +      +     +       + +    +L   E 
Sbjct: 82  EADAVIFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNKGEGGRRDVLAAEFYELALGE- 140

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
               +  S    + + +L  ++  +  + +  +         ++G  N GKS+L NA+  
Sbjct: 141 ---PHVISGAHGDGVYYLMEEVLENFPEAEEEQPENKHPVFAVIGRPNVGKSTLVNAILG 197

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVEN 298
           ++  I  D+ GTTRD + ID + EG    I DTAG+R   + D+ VEK  + +    VE 
Sbjct: 198 EERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEA 257

Query: 299 ADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---------- 340
           A++ +L+ +               +       +    K D  S                 
Sbjct: 258 ANVAVLVLDAQQDIADQDATIAGFALEAGRALVIAVNKWDGISEERRNDIKRDIARKLYF 317

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
                 H IS+    G++ L + I++     F K+P    +         Q 
Sbjct: 318 LDFAKFHYISALKERGIDGLFDSIQAAYDAAFIKMPTPKITRVLQSAIERQA 369



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVVDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  ++T   ++ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMARQTLQAIDEADAVIFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -SDLYSTYTEEY----DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             D+ +    E      H+IS   G+G+  L+ ++        ++ P +
Sbjct: 125 RRDVLAAEFYELALGEPHVISGAHGDGVYYLMEEVLENFPEAEEEQPEN 173


>gi|227510314|ref|ZP_03940363.1| GTP-binding protein EngA [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189966|gb|EEI70033.1| GTP-binding protein EngA [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 435

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 34/206 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I     + + G +  +  +  I+G  N GKSSL NA+  ++  IV+D+ GTTRD 
Sbjct: 154 DLLDKIVEKFPK-ETGNVPNDDIRFSIIGRPNVGKSSLVNAILGENRVIVSDVAGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    + +     + DTAGIR+   +    E+  + R    ++ +D+IL +  IN+++ I
Sbjct: 213 IDTRFEADNIKFTMVDTAGIRKRGKVYENTERYSVMRAMKAIDQSDVILFV--INAEEGI 270

Query: 315 ----------SFPKNIDFIFIGTKSDLYST-----------YTEEYDHL-------ISSF 346
                     +       I +  K D+                 E+ ++       +S+ 
Sbjct: 271 REQDKKVAGYAHEAGKAIITVVNKWDMLKKTNHTQQDFETLIRNEFQYMAYSPIIFVSAK 330

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS 372
           T + +E+L   IK +  N  K++  S
Sbjct: 331 TKQRIEQLPALIKRVYDNHEKRVQSS 356



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G  N GKS++FN +A   ++IV D PG TRD +    +       + DT GI+ +D
Sbjct: 6   VAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTHAEWLANEFAMIDTGGIQISD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFIGTKSDLYS 333
                +   +  + +E AD+I+ +         +     +I +  +   +    K+D   
Sbjct: 66  APFNTQIKNQAEIAIEEADVIVFIVSAKEGLTSDDEQVAKILYRSDKPVVLAVNKADNPD 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370
              + YD           IS   G G+ +L++KI      +   +P
Sbjct: 126 AREDIYDFYALGFGDPMPISGVHGTGIGDLLDKIVEKFPKETGNVP 171


>gi|317049132|ref|YP_004116780.1| ribosome-associated GTPase EngA [Pantoea sp. At-9b]
 gi|316950749|gb|ADU70224.1| ribosome-associated GTPase EngA [Pantoea sp. At-9b]
          Length = 496

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 208 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDDREYILIDTAGVRK 267

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 268 RGKITDTVEKFSVIKTLQAIEDANVVMLVIDARAGISDQDLSLLGFILNSGRSLVIVVNK 327

Query: 329 SD-LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D L     +E                 H IS+  G G+  L   +        K++  S
Sbjct: 328 WDGLSQEVKDEVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVTEAYDCSTKRVNTS 387

Query: 373 IPSH 376
           + + 
Sbjct: 388 MLTR 391



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + VE    +++ L +E AD++L L +       + ++I+     +      +  K+D   
Sbjct: 65  EGVENRMAEQSLLAIEEADVVLFLVDARAGVMPADQQIANHLRSRQKATFLVANKTDGLD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN 356
                 D         H I++  G G+  L+ 
Sbjct: 125 PEAAVLDFYALGLGEIHAIAASHGRGVTSLLE 156


>gi|327440787|dbj|BAK17152.1| predicted GTPase [Solibacillus silvestris StLB046]
          Length = 436

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 94/247 (38%), Gaps = 30/247 (12%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I  +T+    L++  +                    +    L F 
Sbjct: 91  NGREGVTAADEQVAKILYKTKKPVVLAINKIDNPDMRH-----------MIYDFYSLGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E        S      +  L ++ + H  Q    +   +  K  ++G  N GKSSL NA 
Sbjct: 140 E----PWPISGSHGLGLGDLLDECAKHFPQPDEEQYDDDTIKFSLIGRPNVGKSSLVNAF 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEV 296
             +D  IV++I GTTRD +      +G    I DTAG+R+   + E   K  + R    +
Sbjct: 196 LGQDRVIVSEIQGTTRDAIDSPYSYDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAI 255

Query: 297 ENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           E +D++L++   +   +    K            I +  K D      E+ +  ++ FT 
Sbjct: 256 ERSDVVLVVLNADEGIQEQDKKIAGYAHEAGKAVIIVVNKWDAI----EKDEKTMNIFTE 311

Query: 349 EGLEELI 355
           +  E  +
Sbjct: 312 QIREHFL 318



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    D   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSADWLAHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSD--- 330
           +   ++  ++  + ++ AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLEQIRQQAEIAIDEADVIIFMTNGREGVTAADEQVAKILYKTKKPVVLAINKIDNPD 125

Query: 331 ----LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKK 368
               +Y  Y+  +      S   G GL +L+++         ++
Sbjct: 126 MRHMIYDFYSLGFGEPWPISGSHGLGLGDLLDECAKHFPQPDEE 169


>gi|166362822|ref|YP_001655095.1| GTP-binding protein EngA [Microcystis aeruginosa NIES-843]
 gi|189037151|sp|B0JFL6|DER_MICAN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166085195|dbj|BAF99902.1| GTP binding protein [Microcystis aeruginosa NIES-843]
          Length = 452

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 14/151 (9%)

Query: 198 FLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + +  ++      EI  N   K+ I+G  N GKSSL NAL  +  AIV+ I GTTRD
Sbjct: 156 ELLDAVIKYLPPA--AEIPENEEIKVAIIGRPNVGKSSLLNALTGQQRAIVSPISGTTRD 213

Query: 257 VLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI---NS 310
            +   ++ EG + ++ DTAGIR     D   E   I R F  +  +D++L + ++    +
Sbjct: 214 SIDTLIEREGQVYRLIDTAGIRRKKNVDYGAEFFSINRAFKAIRRSDVVLFVIDVLDGVT 273

Query: 311 KKEISFP-----KNIDFIFIGTKSDLYSTYT 336
           ++++        +    + +  K D     T
Sbjct: 274 EQDLKLAGRIIEEGRAVVLVVNKWDAVEKDT 304



 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 19/165 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +A    AIV D PG TRD             +I DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRIAGDQQAIVFDQPGITRDRTYQPAFWCDRDFQIVDTGGLVFND 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIG--TKSDLY 332
           D        ++  + +  A + + + +         ++  ++ +  +   +    K +  
Sbjct: 66  DSEFLPLIREQALIALAEASVAIFVVDGQGGITAGDREIAAWLRQQNVPILLAVNKCESV 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFK 367
                +               S+  G G  EL++ +   L    +
Sbjct: 126 EQGILQATEFWELAIGEPFPISAIHGSGTGELLDAVIKYLPPAAE 170


>gi|325289812|ref|YP_004265993.1| GTP-binding protein engA [Syntrophobotulus glycolicus DSM 8271]
 gi|324965213|gb|ADY55992.1| GTP-binding protein engA [Syntrophobotulus glycolicus DSM 8271]
          Length = 443

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 91/209 (43%), Gaps = 29/209 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +  ++ +    ++  +  KI ++G  N GKSSL N +  ++  IV+DI GTTRD 
Sbjct: 157 DMLDKVVENLPEDDSEDVSPDVIKIAVIGRPNVGKSSLVNKMVGEERVIVSDIAGTTRDA 216

Query: 258 LTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEI-----N 309
           +      E     + DTAGIR   +  ++ E   + R+F  ++ AD++L++ +      +
Sbjct: 217 IDTPFRFEDRDYVLIDTAGIRRRKKIAELTENYSVIRSFRAIDRADVVLMMLDAVEGVTD 276

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST-----------YTEEYDHL-------ISSFTG 348
             K I   +       I +  K DL                EE   +       IS+ TG
Sbjct: 277 QDKRIAGYAHEAGKAIILVINKWDLIEKDDKTINRFERDIREELAFMAYAPTQFISAKTG 336

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHK 377
           + + ++I  +  +      ++  S  +++
Sbjct: 337 QRVHKIIELVDFVAEQNCHRILTSTLNNE 365



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 20/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV + PG TRD L  +         + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTLFNRVVGRMIAIVENTPGVTRDRLYFEAQWLNRNFTLIDTGGIEFKD 65

Query: 282 D--IVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDL 331
               +     ++  + VE AD+++ + +  +K  +                + +  K + 
Sbjct: 66  QSTPLSSLMKQQAEIAVEEADVVVFVLDGKTKATVEDEMVAKFLRSSGKPVVLVVNKVEN 125

Query: 332 YSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKK 368
           +  Y  E              +S+  G  + ++++K+   L     +
Sbjct: 126 FKNYEVESYEYLELGFGEPIPVSAAHGMNIGDMLDKVVENLPEDDSE 172


>gi|294670887|ref|ZP_06735743.1| hypothetical protein NEIELOOT_02591 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307374|gb|EFE48617.1| hypothetical protein NEIELOOT_02591 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 491

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 102/282 (36%), Gaps = 36/282 (12%)

Query: 127 EAESLADLISSET---EMQRRLS--MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           EA+++  L+ + T      + ++  +      +     +       + +    +L   E 
Sbjct: 82  EADAVVFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNKGEGGRHDVLAAEFYELALGE- 140

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
               +  S    + +  L   +  H    K            ++G  N GKS+L NA+  
Sbjct: 141 ---PHVISGAHGDGVYHLIEKVLEHFPDAKEESNEVKHPVFAVIGRPNVGKSTLVNAILG 197

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVEN 298
           ++  I  D+ GTTRD + ID + EG    I DTAG+R   + D+ VEK  + +    VE 
Sbjct: 198 EERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEA 257

Query: 299 ADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---------- 340
           A++ +L+ +               +       +    K D  S                 
Sbjct: 258 ANVAVLVLDAQQDIADQDATIAGFALEAGRALVIAVNKWDGISEERRNDIKRDIARKLYF 317

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                 H IS+    G++ L + I++     F K+P    + 
Sbjct: 318 LDFAKFHYISALKERGIDGLFDSIQAAYDAAFIKMPTPKITR 359



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 65/169 (38%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       L      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGRLGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -SDLYSTYTEEY----DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             D+ +    E      H+IS   G+G+  LI K+     +  ++    
Sbjct: 125 RHDVLAAEFYELALGEPHVISGAHGDGVYHLIEKVLEHFPDAKEESNEV 173


>gi|154483558|ref|ZP_02026006.1| hypothetical protein EUBVEN_01262 [Eubacterium ventriosum ATCC
           27560]
 gi|149735468|gb|EDM51354.1| hypothetical protein EUBVEN_01262 [Eubacterium ventriosum ATCC
           27560]
          Length = 441

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + + S+ +   L +   +  +I I+G  N GKSS+ N +  +   IV++I GTTRD 
Sbjct: 156 DMLDKVVSYFADLNLEQEEDDRPRIAIVGKPNVGKSSIINKITGESRVIVSNIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +  D+   G      DTAG+R      + +EK  I RT   VE AD+++++ +       
Sbjct: 216 IDTDVKWNGKDYVFIDTAGLRRKSKVKEEIEKYSIIRTVTAVERADVVIIVIDAVEGVTE 275

Query: 309 -NSK-KEISFPKNIDFIFIGTKS------------------DLYSTYTEEYDHLISSFTG 348
            ++K   I+       I    K                   D+ S         IS+ TG
Sbjct: 276 QDAKIAGIAHENGKGIIIAVNKWDAIEKNDKTVYEYTNKVRDILSFMPYAEIMFISAKTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + I  +++N   ++   + +
Sbjct: 336 QRLPKLFDMIDFVIANHAMRIETGVVN 362



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA K ++IV D PG TRD +  D+D   +   + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGKKISIVKDTPGVTRDRIHADIDWLDHKFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +DI+  +  ++  + ++ AD+I+ + ++            ++    +   I +  K D +
Sbjct: 66  NDIILSQMREQAQIAIDTADVIIFMTDVKQGLVDSDAKVADMLRRSHKPVILVVNKVDNF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +    +              IS+    GL ++++K+ S  ++   +    
Sbjct: 126 NKMMADVYEFYNLGIGDPVPISASQRSGLGDMLDKVVSYFADLNLEQEED 175


>gi|331701406|ref|YP_004398365.1| GTP-binding protein engA [Lactobacillus buchneri NRRL B-30929]
 gi|329128749|gb|AEB73302.1| GTP-binding protein engA [Lactobacillus buchneri NRRL B-30929]
          Length = 435

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 30/204 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +     +    +   +  +  I+G  N GKSSL NA+  +D  IV+DI GTTRD 
Sbjct: 154 DLLDKVVEKFPKTDE-KTDNDDIRFSIIGRPNVGKSSLVNAILGEDRVIVSDIAGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINS---- 310
           +    + +G    + DTAGIR+   +    E+  + R    ++ +D+IL +         
Sbjct: 213 IDTRFEADGIKFTMVDTAGIRKRGKVYENTERYSVMRAMKAIDQSDVILFVMNAEEGIRE 272

Query: 311 -------------KKEISFPKNIDFIFIGT--KSDLYSTYTEEYDHL-------ISSFTG 348
                        K  I+     D +      + D  +    E+ ++       +S+ T 
Sbjct: 273 QDKKVAGYAHEAGKAIITVVNKWDTLKKTNHTQQDFETLIRNEFQYMSYSPIIFVSAVTK 332

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           + +E+L   IK +  N  K++  S
Sbjct: 333 QRIEKLPALIKQVYDNHEKRVQSS 356



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G  N GKS++FN +A   ++IV D PG TRD +    +       + DT GI+ +D
Sbjct: 6   VAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYSHGEWLATKFAMIDTGGIQISD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
                +   +  + ++ AD+I+ +      + ++ E    I +  +   +    K D   
Sbjct: 66  APFATQIKSQAEIAIDEADVIVFIVSGKEGVTAEDEQVAKILYRSDKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           +  + Y+           IS   G GL +L++K+        +K  
Sbjct: 126 SREDIYEFYSLGFGDPMPISGVHGLGLGDLLDKVVEKFPKTDEKTD 171


>gi|148244763|ref|YP_001219457.1| Era/TrmE family GTP-binding protein [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326590|dbj|BAF61733.1| GTP-binding protein, Era/TrmE family [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 465

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 27/225 (12%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F          S E    I  L N     + +  + E +  G  I +LG  N GKS+L N
Sbjct: 136 FELGLGKPILISAEHGQGIDNLINTTLPLLPKVTVNEEVVEGITIAVLGKPNVGKSTLIN 195

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE---GIKRTFL 294
            + ++   I  D+PGTTRD + I  + +G    + DTAGIR  +   EK     I +T  
Sbjct: 196 HILREKRVIAIDLPGTTRDSIYIPFERKGQQYTLIDTAGIRRKNSTHEKIEIFSIIKTIN 255

Query: 295 EVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEE-------- 338
            +E A +++L+ +     +K++ S       K+   + +  K D    Y ++        
Sbjct: 256 ALERAHVVILVLDAQTGVTKQDASLLGMILDKDKALLIVINKWDGLDDYQKQEVKRKLEV 315

Query: 339 --------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                     H IS+  G G+++L   I     +  K+   SI +
Sbjct: 316 KLSFISYTSVHYISALHGSGVDKLFTPINQSYQDACKQHSTSILN 360



 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 21/155 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG---YLVKISDTAGIR 278
           I ++G  N GKS+LFN L+    A+V+D  G TRD     + L         I DT G  
Sbjct: 6   ICLIGRPNVGKSTLFNRLSHSRQALVSDFAGLTRDRQYAKVLLNDDTQTFTTIIDTGGFT 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKS 329
              ++V+     +    +E +D+I  +          ++     +   K  + I +  K+
Sbjct: 66  NKVNLVDSGIQDQILSALEESDVIYFILNSRDGVISLDLEIASHLRRLKK-NIILVCNKA 124

Query: 330 D-LYSTYTEEY-------DHLISSFTGEGLEELIN 356
           + L  T T E+         LIS+  G+G++ LIN
Sbjct: 125 EGLNPTLTTEFFELGLGKPILISAEHGQGIDNLIN 159


>gi|291522204|emb|CBK80497.1| ribosome-associated GTPase EngA [Coprococcus catus GD/7]
          Length = 441

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++  H   G   E       + I+G  N GKSSL N L  ++  IV++I GTTRD 
Sbjct: 156 DMLDEVIKHFKPGTAEEEADERPHVAIVGKPNVGKSSLINKLTGENRVIVSNIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +   G      DTAG+R    I   +E+  I RT   VE A++++L+ +       
Sbjct: 216 IDTVIKHNGKEYVFIDTAGLRRKSKIKEDIERYSIIRTVSAVERANVVVLMIDAKEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDH------------------LISSFTG 348
                  I+  +    I    K D      +  +                    IS+ TG
Sbjct: 276 QDAKIAGIAHERGKGMIIAVNKWDAIEKDDKTMNKFTKDVREKLAFMPYAEMLFISAETG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + I +++ N   ++   + +
Sbjct: 336 QRLPKLFDTIDAVIENHAMRVGTGVLN 362



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D++       + DT GI   T
Sbjct: 6   VAIIGRPNVGKSTLFNALAGQQISIVKDTPGVTRDRIYADVNWLNTQFTMIDTGGIEPST 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
           +D++ K   ++  + +E AD+I+ L ++             +        + +  K D
Sbjct: 66  NDLILKSMREQAEIAIETADVIIFLTDVRQGVVDADFQVANMIRRSGKPVVLVVNKVD 123


>gi|254302562|ref|ZP_04969920.1| possible GTPase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148322754|gb|EDK88004.1| possible GTPase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 440

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 93/241 (38%), Gaps = 35/241 (14%)

Query: 132 ADLISSETEMQRRLSMEGMS------------GELSSLYGQWIDKLTHIRSFIEADLD-- 177
            D + ++ + Q  ++M                  L       + K           +D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDDEIAYILRKKNKPVILCVNKIDNF 124

Query: 178 FSEEEDVQNFS----------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           F +++DV +F           S E   ++  + + +   I +    E      K+ ++G 
Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVDIIGKMDFPEEDEEVLKLAVIGK 184

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIV 284
            NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR     ++ +
Sbjct: 185 PNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRKSKVEESL 244

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           E   + R    ++ AD+ +L+ +              I+  +    I +  K DL     
Sbjct: 245 EYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAHEELKPIIIVMNKWDLIENKN 304

Query: 337 E 337
            
Sbjct: 305 N 305



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +         +    I   KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDDEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D +   F G G E L+
Sbjct: 123 -NFFEQQDDVY-DFYGLGFEYLV 143


>gi|166712110|ref|ZP_02243317.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 465

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 101/261 (38%), Gaps = 41/261 (15%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE-----------VLNDILFLKN 201
            L      W+ KL      +   +D ++EE V++  ++                I  L  
Sbjct: 98  SLDDEILAWLRKLARQTVLVINKIDGTDEETVRSEFARYGFCNVVALSAAHRQGIDELLE 157

Query: 202 DISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ + + +   GE++ N     +I  +G  N GKS+L N L  ++  I +++PGTTRD +
Sbjct: 158 EVGARLPEEGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSI 217

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            +DL+ +G   ++ DTAG+R   + ++ VEK    +T   +E   + +L+ +        
Sbjct: 218 AVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGVTDQ 277

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEGL 351
                          +    K D  S Y                       IS+  G G+
Sbjct: 278 DATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVSWAEAVRISALHGSGM 337

Query: 352 EELINKIKSILSNKFKKLPFS 372
            EL   I    ++   +   S
Sbjct: 338 RELFQAIHRAHASATHEFSTS 358



 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + ++G  N GKS++FNAL +   A+V D PG TRD       L+      + DT GI   
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRHYGVCRLDEQQPFIVVDTGGIAGD 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDLY 332
           +D +     ++       ADL+L + +          + +++ +      + +  K D  
Sbjct: 65  EDGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARQTVLVINKIDGT 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKL 369
              T   +            S+   +G++EL+ ++ + L  +    
Sbjct: 125 DEETVRSEFARYGFCNVVALSAAHRQGIDELLEEVGARLPEEGSGE 170


>gi|90961863|ref|YP_535779.1| GTP-binding protein EngA [Lactobacillus salivarius UCC118]
 gi|227890889|ref|ZP_04008694.1| GTP-binding protein EngA [Lactobacillus salivarius ATCC 11741]
 gi|122448999|sp|Q1WTQ4|DER_LACS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|90821057|gb|ABD99696.1| GTP-binding protein [Lactobacillus salivarius UCC118]
 gi|227867298|gb|EEJ74719.1| GTP-binding protein EngA [Lactobacillus salivarius ATCC 11741]
 gi|300214593|gb|ADJ79009.1| GTP-binding protein engA [Lactobacillus salivarius CECT 5713]
          Length = 436

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN LA + ++IV D PG TRD +    +  G+   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRLAGERISIVEDTPGVTRDRIYARTEWLGHPFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK-------EINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + +E AD+I+ +        + + K   I +  +   +    K D   
Sbjct: 66  EPFLTQITEQAEIAIEEADVIIFVVSVKEGVTDADEKVARILYRTDKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD     F          G G  +L++KI                
Sbjct: 126 LRADIYDFYSLGFGEPIPVAGTHGIGTGDLLDKIIKEFPKDATNEEDDSI 175



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 31/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I     +    E   +  K   +G  N GKSSL NA+  ++  IV++I GTTRD 
Sbjct: 154 DLLDKIIKEFPKDATNEED-DSIKFSFIGRPNVGKSSLVNAILGENRVIVSNIEGTTRDA 212

Query: 258 LTIDLDL-EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINS--- 310
           +    +  +G    + DTAGIR+   +    EK  + R    ++ +D++ ++        
Sbjct: 213 IDTRFETEDGTKYTMIDTAGIRKKGKVYENTEKYSVLRAMRAIDRSDVVCVVLNAEEGIR 272

Query: 311 --------------KKEISFPKNIDFIFIGTK--SDLYSTYTEEYDH-------LISSFT 347
                         +  +      D +    K  SD  +   +E+ +        +S+ T
Sbjct: 273 EQDKHVAGYAHEAGRAIVIVVNKWDTLKKDNKTMSDFENLIRQEFQYLSYAPIVFVSAKT 332

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPS 375
            + L++L   IK +  N  +++  ++ +
Sbjct: 333 KQRLDKLPELIKRVNDNHEQRISSAVLN 360


>gi|294625013|ref|ZP_06703663.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294666614|ref|ZP_06731853.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292600688|gb|EFF44775.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292603634|gb|EFF47046.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 465

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 110/278 (39%), Gaps = 33/278 (11%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE-----------VLNDILFLKN 201
            L      W+ KL      +   +D ++EE V++  ++                I  L +
Sbjct: 98  SLDDEILAWLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLD 157

Query: 202 DISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ + + +   GE++ N     +I  +G  N GKS+L N L  ++  I +++PGTTRD +
Sbjct: 158 EVGARLPEEGAGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSI 217

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            +DL+ +G   ++ DTAG+R   + ++ VEK    +T   +E   + +L+ +        
Sbjct: 218 AVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGVTDQ 277

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                          +    K D  S Y       + S         +N  +++  +   
Sbjct: 278 DATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLG----FVNWAEAVRISALH 333

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
                   H  H  H S T  +    S +E +  L+I 
Sbjct: 334 GSGMRELFHAIHRAHASATHEF----STSEVNQALEIA 367



 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + ++G  N GKS++FNAL +   A+V D PG TRD       L+      + DT GI   
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDLY 332
           ++ +     ++       ADL+L + +          + +++ +      + +  K D  
Sbjct: 65  EEGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARPTVLVINKIDGT 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNK 365
              T   +            S+   +G++EL++++ + L  +
Sbjct: 125 DEETVRSEFARYGFSDVVALSAAHRQGIDELLDEVGARLPEE 166


>gi|315658242|ref|ZP_07911114.1| ribosome-associated GTPase EngA [Staphylococcus lugdunensis M23590]
 gi|315496571|gb|EFU84894.1| ribosome-associated GTPase EngA [Staphylococcus lugdunensis M23590]
          Length = 436

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H ++        +  ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD 
Sbjct: 154 DLLDEVVKHFNKETEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   +     + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 IDTEYTYDNQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLIVIDAEEGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEEGKAVVIVVNKWDTVEK 301



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + ++ AD+I+ +  +            +I +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK 368
             T+ YD           IS   G GL +L++++    + + + 
Sbjct: 126 MKTDIYDFYALGFGEPYPISGSHGLGLGDLLDEVVKHFNKETED 169


>gi|312173198|emb|CBX81453.1| GTP-binding protein engA [Erwinia amylovora ATCC BAA-2158]
          Length = 499

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 27/190 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 211 IKLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRK 270

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A++++L+ + +   S +++S            + +  K
Sbjct: 271 RGKVTETVEKFSVIKTLKAIEDANVVMLVIDAHEGISDQDLSLLGFILNSGRSLVIVVNK 330

Query: 329 SD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D     +     E  D           H IS+  G G+  L   +        +++  S
Sbjct: 331 WDGLSQEVRDEVKEALDYRLGFIDFARIHFISALHGSGVGNLFESVTEAYDCSTRRVNTS 390

Query: 373 IPSHKRHLYH 382
           + +   H+  
Sbjct: 391 MLTRIMHMAA 400



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGNE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADTAIAKHLRARQKPTFIVANKTDGLD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN 356
             +   D         H I++  G G+  L+ 
Sbjct: 125 ADSAVVDFWSLGLGEIHPIAASHGRGVTSLLE 156


>gi|312794132|ref|YP_004027055.1| ribosome-associated gtpase enga [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312877879|ref|ZP_07737825.1| ribosome-associated GTPase EngA [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311795342|gb|EFR11725.1| ribosome-associated GTPase EngA [Caldicellulosiruptor lactoaceticus
           6A]
 gi|312181272|gb|ADQ41442.1| ribosome-associated GTPase EngA [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 440

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 11/192 (5%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
           ++K+ +I         +          S E    +  + + + ++  +  + EI  +  K
Sbjct: 118 VNKIDNISQQAMIYEFYELGLSDPIAMSAEHGTGVGDVLDAVVNYFDKEGINEIEESTIK 177

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +  ++  IV+DIPGTTRD +    + EG  + + DTAG+R   
Sbjct: 178 VAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTFEFEGIPITLIDTAGLRRKS 237

Query: 282 DIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            I    E+  + RT   +E +D+ ++L +               ++      I    K D
Sbjct: 238 KIYDNVERYSMLRTLQAIERSDICIILLDGTEDVSEQDAKVAGYAYEAGKGCIVAVNKWD 297

Query: 331 LYSTYTEEYDHL 342
                 +  D  
Sbjct: 298 AVEKDEKTADEY 309



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  +  AIV D PG TRD +  + +  G    + DT GI   +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPYS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           +DI+ K+  ++    ++ +D+I+ + +      ++ +E++          +    K D  
Sbjct: 65  EDIILKQMRRQAQFAIDMSDVIIFMVDGKTGLTDADREVANMLRTSKKPIVLAVNKIDNI 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
           S     Y+           +S+  G G+ ++++ + +    +    
Sbjct: 125 SQQAMIYEFYELGLSDPIAMSAEHGTGVGDVLDAVVNYFDKEGINE 170


>gi|301299471|ref|ZP_07205746.1| ribosome-associated GTPase EngA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852934|gb|EFK80543.1| ribosome-associated GTPase EngA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 436

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN LA + ++IV D PG TRD +    +  G+   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRLAGERISIVEDTPGVTRDRIYARTEWLGHPFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK-------EINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + +E AD+I+ +        + + K   I +  +   +    K D   
Sbjct: 66  EPFLTQITEQAEIAIEEADVIIFVVSVKEGVTDADEKVARILYRTDKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD     F          G G  +L++KI                
Sbjct: 126 LRADIYDFYSLGFGEPIPVAGTHGIGTGDLLDKIIKEFPKDATNEEDDSI 175



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 92/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I     +    E   +  K   +G  N GKSSL NA+  ++  IV++I GTTRD 
Sbjct: 154 DLLDKIIKEFPKDATNEED-DSIKFSFIGRPNVGKSSLVNAILGENRVIVSNIEGTTRDA 212

Query: 258 LTIDLDL-EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +    +  +G    + DTAGIR+   +    EK  + R    ++ +D++ ++  +N++++
Sbjct: 213 IDTRFETEDGTKYTMIDTAGIRKKGKVYENTEKYSVLRAMRAIDRSDVVCVV--LNAEED 270

Query: 314 I----------SFPKNIDFIFIGTK-----------SDLYSTYTEEYDH-------LISS 345
           I          +       + +  K           SD  +   +E+ +        +S+
Sbjct: 271 IREQDKHVAGYAHEAGRAIVIVVNKWDTLKKDNKTMSDFENLIRQEFQYLSYAPIVFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L++L   IK +  N  +++  ++ +
Sbjct: 331 KTKQRLDKLPELIKRVNDNHEQRISSAVLN 360


>gi|194334612|ref|YP_002016472.1| GTP-binding protein EngA [Prosthecochloris aestuarii DSM 271]
 gi|238693304|sp|B4S433|DER_PROA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|194312430|gb|ACF46825.1| small GTP-binding protein [Prosthecochloris aestuarii DSM 271]
          Length = 436

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 11/161 (6%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             F S    + +  L + +     +    E   +  ++ I+G  N GKSS  NAL   + 
Sbjct: 142 PWFISARDGSGVADLLDAVVDSFEEKSGQEEEDDSIRLAIIGRPNVGKSSFVNALLGTNR 201

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADL 301
            IV++ PGTTRD +       G  + + DTAG+R+    D  +E     RT   +E  D+
Sbjct: 202 NIVSNKPGTTRDAIDTRFKRNGREIVLIDTAGLRKRARIDAGIEFYSSLRTERAIERCDV 261

Query: 302 ILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYST 334
            L+L +             E++  +    + +  K DL   
Sbjct: 262 ALVLIDAEQGLEKQDMKIIEMAAERKKGVLLLVNKWDLIEK 302



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN +  +  AIV   PG TRD   +  +  G    + DT G     
Sbjct: 5   VALVGRPNVGKSTLFNRITHQKSAIVDSTPGVTRDRHIMPAEWIGKEFLVMDTGGYCHDS 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPK-------NIDFIFIGTKSDL 331
           D + K  +++T   +  AD+I+ L ++ S     ++   K       +    F   K + 
Sbjct: 65  DGISKAMLEQTLTAIGEADVIIFLVDVRSGLTYLDLDMAKLLKRDFNDKPVYFAVNKVES 124

Query: 332 YSTYTEEYDHLISSFT---------GEGLEELINKIKSILSNKFKKLPFS 372
                E      + FT         G G+ +L++ +      K  +    
Sbjct: 125 PQLAYEGESFRKTGFTEPWFISARDGSGVADLLDAVVDSFEEKSGQEEED 174


>gi|289670462|ref|ZP_06491537.1| GTP-binding protein EngA [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 465

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 101/261 (38%), Gaps = 41/261 (15%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE-----------VLNDILFLKN 201
            L      W+ KL      +   +D ++EE V++  ++                I  L  
Sbjct: 98  SLDDEILAWLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLE 157

Query: 202 DISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ + + +   GE++ N     +I  +G  N GKS+L N L  ++  I +++PGTTRD +
Sbjct: 158 EVGARLPEEGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSI 217

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            +DL+ +G   ++ DTAG+R   + ++ VEK    +T   +E   + +L+ +        
Sbjct: 218 AVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGVTDQ 277

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEGL 351
                          +    K D  S Y                       IS+  G G+
Sbjct: 278 DATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVSWAEAVRISALHGSGM 337

Query: 352 EELINKIKSILSNKFKKLPFS 372
            EL   I    ++   +   S
Sbjct: 338 RELFQAIHRAHASATHEFSTS 358



 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + ++G  N GKS++FNAL +   A+V D PG TRD       L+      + DT GI   
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDLY 332
           ++ +     ++       ADL+L + +          + +++ +      + +  K D  
Sbjct: 65  EEGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARPTVLVINKIDGT 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKL 369
              T   +            S+   +G++EL+ ++ + L  +    
Sbjct: 125 DEETVRSEFARYGFSDVVALSAAHRQGIDELLEEVGARLPEEGSGE 170


>gi|238924644|ref|YP_002938160.1| GTP-binding protein EngA [Eubacterium rectale ATCC 33656]
 gi|259645876|sp|C4ZD63|DER_EUBR3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238876319|gb|ACR76026.1| GTP-binding protein EngA [Eubacterium rectale ATCC 33656]
 gi|291525305|emb|CBK90892.1| ribosome-associated GTPase EngA [Eubacterium rectale DSM 17629]
 gi|291529236|emb|CBK94822.1| ribosome-associated GTPase EngA [Eubacterium rectale M104/1]
          Length = 441

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 16/172 (9%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++  H       +   +  ++ I+G  N GKSSL N LA++D  IV+DI GTTRD 
Sbjct: 156 DMLDEVVKHFPDSSKQDDEDDRPRVAIVGKPNVGKSSLINKLAREDRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +  +G      DTAG+R  + I   +E+  I R    VE AD+++++ +       
Sbjct: 216 IDTAIKYDGKEYIFIDTAGLRRKNKIKEDIERYSIIRAVSAVERADVVIVVIDATEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
                  I+  +    I    K D       E D+       E + ++++ I
Sbjct: 276 QDAKIAGIAHERGKGIIIAVNKWDAI-----EKDNNTVKQHTEKIRQILSFI 322



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 80/170 (47%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+    Y   + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNALAGERISIVKDTPGVTRDRIYADVSWLDYNFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D++  +  ++  + ++ AD+I+ + ++            ++    +   + +  K D +
Sbjct: 66  GDVILSQMREQAQIAIDTADVIIFITDVKQGLVDSDSKVADMLRRSHKPVVLVVNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             Y  +            H IS+ +  GL ++++++     +  K+    
Sbjct: 126 EKYMTDVYEFYNLGIGDPHPISAASMLGLGDMLDEVVKHFPDSSKQDDED 175


>gi|28210831|ref|NP_781775.1| GTP-binding protein EngA [Clostridium tetani E88]
 gi|37999662|sp|Q895X8|DER_CLOTE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|28203269|gb|AAO35712.1| GTP-binding protein [Clostridium tetani E88]
          Length = 438

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 117/316 (37%), Gaps = 60/316 (18%)

Query: 118 FENGKIDLLEAESLA----DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT------- 166
           + N    +++   +     D+I ++   Q  +++E     +        + LT       
Sbjct: 48  WLNHNFTIIDTGGIEPESEDIIVAQMRRQAEMAIEMAD--VIMFIVDGKEGLTPADNEVA 105

Query: 167 -------HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL-----------KNDISSHIS 208
                       +   +D  EEED         + +   +            + I  +  
Sbjct: 106 LMLRKSKKPIVLVVNKIDRIEEEDNMYEFYNLGIGEPTTISASQALGLGDMLDKIVENFP 165

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           +G   E      +I  +G  N GKSSL N +  ++  IV++IPGTTRD +   L+ +   
Sbjct: 166 KGYQDEEEDEYIRIAFVGKPNVGKSSLINKILGEERNIVSNIPGTTRDAIDSFLERDEDK 225

Query: 269 VKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------- 318
             + DTAG+R   +  D +E+    RT+  ++ AD+ +LL +          K       
Sbjct: 226 FILIDTAGLRRRSKVKDQIERYSTVRTYAAIDRADVCILLIDAEEGISEQDKKIIGYAHE 285

Query: 319 -NIDFIFIGTKSDLYSTYTEEYD------------------HLISSFTGEGLEELINKIK 359
            N   + +  K DL    T   +                    IS+ TG+ + ++++  K
Sbjct: 286 LNKALMVVVNKWDLIEKETNTMNRFKKELQSELSFMSYAPYIFISAKTGQRVGKVLDLAK 345

Query: 360 SILSNKFKKLPFSIPS 375
              +N  K++   + +
Sbjct: 346 ECYTNYSKRISTGVLN 361



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D PG TRD +    +   +   I DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVEDTPGVTRDRIYAQAEWLNHNFTIIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           +DI+  +  ++  + +E AD+I+ + +         N    +        + +  K D  
Sbjct: 66  EDIIVAQMRRQAEMAIEMADVIMFIVDGKEGLTPADNEVALMLRKSKKPIVLVVNKIDRI 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 Y+            S+    GL ++++KI       ++     
Sbjct: 126 EEEDNMYEFYNLGIGEPTTISASQALGLGDMLDKIVENFPKGYQDEEED 174


>gi|260881015|ref|ZP_05403389.2| ribosome-associated GTPase EngA [Mitsuokella multacida DSM 20544]
 gi|260850181|gb|EEX70188.1| ribosome-associated GTPase EngA [Mitsuokella multacida DSM 20544]
          Length = 445

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 22/174 (12%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I +   + +      +   I ++G  N GKSS+ NA+  ++  IV+D+PGTTRD 
Sbjct: 157 DLLDAIVAAFPKKEEEVKDEDEISIAVIGRPNVGKSSIVNAILGEERVIVSDVPGTTRDA 216

Query: 258 LTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +      +G    + DTAG+R   + D+ VE+  + R+   ++ AD++L++  IN+ + I
Sbjct: 217 IDTHFTKDGTKFTLIDTAGMRRRGKIDEPVERYSVMRSLRAIDRADVVLMM--INAFEGI 274

Query: 315 ----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
                     +       + +  K D+   Y ++ D     FT    +EL +K+
Sbjct: 275 TEQDKKIAGYAHESGKGVVIVVNKWDI---YPDKDDKSTLRFT----DELRDKL 321



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN + KK V+IV D+PG TRD + +D +       + DT GI  + 
Sbjct: 8   VAIVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYLDAEWLNQHFTMIDTGGIEFDE 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            + + K   ++  L ++ AD+IL L +  S           +        I    K D  
Sbjct: 68  SNHILKSMRQQAQLAMDEADVILFLVDGRSGLTTADEEVARLLRSTKKPVILAVNKIDSP 127

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
               + Y+            S+     L +L++ I +   
Sbjct: 128 QRAMDVYEFYNLGLGDPIPISASNAMNLGDLLDAIVAAFP 167


>gi|255525663|ref|ZP_05392596.1| small GTP-binding protein [Clostridium carboxidivorans P7]
 gi|296185422|ref|ZP_06853832.1| ribosome-associated GTPase EngA [Clostridium carboxidivorans P7]
 gi|255510649|gb|EET86956.1| small GTP-binding protein [Clostridium carboxidivorans P7]
 gi|296050256|gb|EFG89680.1| ribosome-associated GTPase EngA [Clostridium carboxidivorans P7]
          Length = 438

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 119/296 (40%), Gaps = 52/296 (17%)

Query: 132 ADLISSETEMQRRLSM------------EGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           +D+I S+   Q  +++            +    +      Q + K       +   +D  
Sbjct: 66  SDIIISQMRRQATMAVETANVIVFIVDGKQGLTDADKEVAQMLRKSKKPVVLVVNKIDSL 125

Query: 180 EEEDVQNFSSKEVLNDILFL-----------KNDISSHISQGKLGEIIRNGYKIVILGHS 228
           ++ED         + + + +            + + S+    KL +      KI  +G  
Sbjct: 126 KDEDNAYEFYNLGIGEPIAISASQALGLGDMLDKVVSYFDDDKLDDEDDEYIKIAFVGKP 185

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVE 285
           N GKSSL N L  +D  IV++IPGTTRD +   L+ E     + DTAG+R      + +E
Sbjct: 186 NVGKSSLINKLLGEDRVIVSEIPGTTRDAIDSYLETEQGKFTLIDTAGLRRKSKVKEEIE 245

Query: 286 KEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNID--FIFIGTKSDLYSTYTE 337
           +  + RT+  +E AD+ +L+ +         +K I +   +    + I  K DL    T 
Sbjct: 246 RYSVIRTYTAIERADVCILMLDATHGITDQDEKIIGYAHEMSKAIMVIVNKWDLVEKDTN 305

Query: 338 EYD------------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
             +                    IS+ TG+ ++++++ +K   SN  KK+   + +
Sbjct: 306 TMNAFKKQIGMNLSFMSYAPYLFISAKTGQRVQKVLDMVKECYSNYSKKIKTGVLN 361



 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +A K ++IV D PG TRD +  + +   Y   I DT GI  E 
Sbjct: 6   VAIVGRPNVGKSTLFNKMAGKRISIVQDTPGVTRDRIYAEAEWLKYNFTIIDTGGIEPEN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + VE A++I+ + +      ++ KE++          + +  K D  
Sbjct: 66  SDIIISQMRRQATMAVETANVIVFIVDGKQGLTDADKEVAQMLRKSKKPVVLVVNKIDSL 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
                 Y+            S+    GL ++++K+ S  
Sbjct: 126 KDEDNAYEFYNLGIGEPIAISASQALGLGDMLDKVVSYF 164


>gi|220931895|ref|YP_002508803.1| small GTP-binding protein [Halothermothrix orenii H 168]
 gi|254783157|sp|B8CWY9|DER_HALOH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|219993205|gb|ACL69808.1| small GTP-binding protein [Halothermothrix orenii H 168]
          Length = 438

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 29/227 (12%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           ++   D     S E   +   L ++I + + +    +   +   + I+G  N GKSSL N
Sbjct: 136 YTLGFDKLIPISAEHGKNTGDLLDEIVNMLPEKGPEDSDDDAIDVAIIGKPNVGKSSLVN 195

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFL 294
            +  ++  IV+DIPGTTRD +   ++  G+   + DTAG+R+   +    E     RT  
Sbjct: 196 YIVGQERVIVSDIPGTTRDAIDTLVEKNGHRYNLIDTAGLRKKSRVKEATEYYSALRTIK 255

Query: 295 EVENADLILLLKEI-----NSKKEI---SFPKNIDFIFIGTKSDLYST-------YTEEY 339
            ++ +D ++++ +         K+I   +       +    K DL          Y EE 
Sbjct: 256 AIDRSDGVIMMIDALEGVTEQDKKIAGYAHEAGKAIVLAVNKWDLVEKDTHTMENYKEEI 315

Query: 340 DH-----------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            +            IS+ TG+ ++EL+  I+ ++    +++   + +
Sbjct: 316 YYNLKFLQYAPVTFISALTGKRVQELLKLIEYVVDQNSRRVKTGLLN 362



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN LA   ++IV   P  TRD +  D++       I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTLFNRLAGYRISIVEGEPNVTRDRIYADVNWLDRSFIIVDTGGIDPYD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLY 332
               K  +K +  + ++ A LIL + +         ++  +F +  N   I +  K D +
Sbjct: 66  RDQIKNMVKYQAQMAIDEASLILFVVDGRNGLTATDEEVAAFLRKSNKKVILVVNKVDDF 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
               E+               S+  G+   +L+++I ++L  K  +    
Sbjct: 126 KNMEEDCWEFYTLGFDKLIPISAEHGKNTGDLLDEIVNMLPEKGPEDSDD 175


>gi|229096095|ref|ZP_04227068.1| GTP-binding protein engA [Bacillus cereus Rock3-29]
 gi|229102207|ref|ZP_04232916.1| GTP-binding protein engA [Bacillus cereus Rock3-28]
 gi|229115051|ref|ZP_04244461.1| GTP-binding protein engA [Bacillus cereus Rock1-3]
 gi|228668191|gb|EEL23623.1| GTP-binding protein engA [Bacillus cereus Rock1-3]
 gi|228681108|gb|EEL35276.1| GTP-binding protein engA [Bacillus cereus Rock3-28]
 gi|228687055|gb|EEL40960.1| GTP-binding protein engA [Bacillus cereus Rock3-29]
          Length = 436

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++ ++H  + +         +  ++G  N GKSSL NAL  ++  IV++I GTTRD 
Sbjct: 154 DLLDEAANHFPKIEEEAYDDETIRFSLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +      +G    I DTAG+R+   +    EK  + R    +E +D++L++ +     I 
Sbjct: 214 VDTPYSKDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIE 273

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST 334
             K+I   +       I +  K D    
Sbjct: 274 QDKKIAGYAHDSGRAVIIVVNKWDAVKK 301



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
             ++ YD           IS   G GL +L+++  +   
Sbjct: 126 MRSDIYDFYALGFGEPFPISGTHGLGLGDLLDEAANHFP 164


>gi|251796400|ref|YP_003011131.1| GTP-binding protein EngA [Paenibacillus sp. JDR-2]
 gi|247544026|gb|ACT01045.1| small GTP-binding protein [Paenibacillus sp. JDR-2]
          Length = 440

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 22/159 (13%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNG-----YKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           +  L + + + + I   KL E+  +G      ++ ++G  N GKSSL NAL  ++  IV+
Sbjct: 148 SHGLGIGDMLDAAIE--KLPELEDDGYDDDVIRVALIGRPNVGKSSLVNALLGEERVIVS 205

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLL 305
           ++ GTTRD +    + +G    + DTAG+R+   +    EK  + R    +E AD++L+L
Sbjct: 206 NVAGTTRDAIDTPFERDGQKYVLIDTAGMRKRGKVYESTEKYSVMRALKAIERADVVLVL 265

Query: 306 KEINSKKEI----------SFPKNIDFIFIGTKSDLYST 334
             IN ++ I          +       IF+  K D+   
Sbjct: 266 --INGEEGIIEQDKHIAGYAHEAGKASIFVVNKWDVVDK 302



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS++FN +    +AIV D PG TRD L    +  G    I DT GI  + 
Sbjct: 6   IAIVGRPNVGKSTIFNRVVGDRLAIVEDKPGVTRDRLYSPGEWNGKAFSIVDTGGIEIDG 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           +D + K    +  L +E AD+I+ + +         +   ++ F  +   +    K D  
Sbjct: 66  EDEIMKSVRMQAELAIEEADVIIFMCDAKTGVTHADDEVAQMLFRSHKPVVLAVNKVDNL 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
           +   E Y+           +S   G G+ ++++     L  
Sbjct: 126 NRMDEIYEFYGLGFGTPIAVSGSHGLGIGDMLDAAIEKLPE 166


>gi|291085040|ref|ZP_06570912.1| ribosome-associated GTPase EngA [Citrobacter youngae ATCC 29220]
 gi|291071734|gb|EFE09843.1| ribosome-associated GTPase EngA [Citrobacter youngae ATCC 29220]
          Length = 504

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 217 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 276

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 277 RGKITEAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 336

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  +   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 337 WDGLTQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 396

Query: 373 IPSH 376
           + + 
Sbjct: 397 MLTR 400



 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 17/169 (10%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +S   L E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG
Sbjct: 4   LSDDFLNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEG 63

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPK 318
                 DT GI  T+D VE    +++ L +E AD++L + +       + + I+     +
Sbjct: 64  REFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRAR 123

Query: 319 NIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLEELINKI 358
                 +  K+D         D         H I++  G G+  L+  +
Sbjct: 124 QKPTFLVANKTDGLDPDQAVIDFYSLGLGEIHPIAASHGRGVLSLLEHV 172


>gi|289550746|ref|YP_003471650.1| GTP-binding protein EngA [Staphylococcus lugdunensis HKU09-01]
 gi|289180278|gb|ADC87523.1| GTP-binding protein EngA [Staphylococcus lugdunensis HKU09-01]
          Length = 436

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H ++        +  ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD 
Sbjct: 154 DLLDEVVKHFNKETEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   +     + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 IDTEYTYDNQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLIVIDAEEGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEEGKAVVIVVNKWDTVEK 301



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + ++ AD+I+ +  +            +I +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKTVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK 368
             T+ YD           IS   G GL +L++++    + + + 
Sbjct: 126 MKTDIYDFYALGFGEPYPISGSHGLGLGDLLDEVVKHFNKETED 169


>gi|330752119|emb|CBL87080.1| GTP-binding protein [uncultured Flavobacteria bacterium]
          Length = 434

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 96/237 (40%), Gaps = 18/237 (7%)

Query: 127 EAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           EA+++  ++  ET        +  +           ++K+ +      A   +S   D  
Sbjct: 82  EADAIIFMVEVETGVTGMDEEVAHLLRRSRKPVFLAVNKVDNAMRQDGAVEFYSLGFDKV 141

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
              S         L +D+   + + ++     +  +  ++G  NAGKSS  N+L  +D  
Sbjct: 142 YPISGNNGGGSGELLDDLVKALPE-EIESNDADVPRFAVVGRPNAGKSSFINSLIGEDRY 200

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLI 302
           IVTDI GTTRD +    +  G+   + DTAGIR    +   +E   + R+   +E+ D+ 
Sbjct: 201 IVTDIAGTTRDSIDTRYNRFGFEFNLIDTAGIRRKAKVKEDIEFYSVMRSVRAIEHCDVC 260

Query: 303 LLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           +L+ +     +        ++   N   + +  K DL      E DH  +    E +
Sbjct: 261 ILVVDATRGFDGQVQNIFWLAHRNNKGIVILVNKWDLV-----EKDHKTTKAFEEKI 312



 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN + +K  AIV  + G TRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRMIQKREAIVDAVSGVTRDRHYGKTDWNGRDFSLIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
           DD+ EKE  K+  L +E AD I+ + E+ +           +             K D  
Sbjct: 65  DDVFEKEIDKQVELAIEEADAIIFMVEVETGVTGMDEEVAHLLRRSRKPVFLAVNKVDNA 124

Query: 331 -----LYSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                    Y+  +D  + IS   G G  EL++ +   L  + +     +P
Sbjct: 125 MRQDGAVEFYSLGFDKVYPISGNNGGGSGELLDDLVKALPEEIESNDADVP 175


>gi|291297034|ref|YP_003508432.1| small GTP-binding protein [Meiothermus ruber DSM 1279]
 gi|290471993|gb|ADD29412.1| small GTP-binding protein [Meiothermus ruber DSM 1279]
          Length = 453

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 11/150 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRN--GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L   I + +   + GE        ++ I+G  NAGKSSL NA+  ++  IV++IPGTTR
Sbjct: 163 ELLERIWALLP-IRQGESEPEVVPIRLAIVGRPNAGKSSLLNAILGEERVIVSEIPGTTR 221

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSKKE- 313
           D + ++ D  G    + DTAGIR+  +  VE++ I R    + +AD++LL+ +     + 
Sbjct: 222 DSIDVEFDYGGSRFLLVDTAGIRKRPETGVEEQAIVRAHQAIRDADVVLLVIDPKELGDH 281

Query: 314 ------ISFPKNIDFIFIGTKSDLYSTYTE 337
                  +       I   TK DL  T  E
Sbjct: 282 ELKLANEALEAGKPVILTITKWDLIETKEE 311



 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 30/187 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAK------------KDVAIVTDIPGTTRDVLTIDLDLEGY 267
           Y++VI+G  N GKSSLFN L                 A+V D+PG TRD+    ++ E  
Sbjct: 2   YRVVIVGRPNVGKSSLFNKLLGLRAAPEKAAKAGSQFAVVADVPGVTRDLKEGVVESEQG 61

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKN 319
             K+ DT G+  + D+ EK+  ++    + +ADL+L   +  S          +    + 
Sbjct: 62  RFKLVDTGGL-WSGDVWEKKIKQKVERAIADADLVLFAVDGRSDIVTADLEVADFLRRQG 120

Query: 320 IDFIFIGTKSD-------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
              + + TK D       L S Y   +      S+    G +EL+ +I ++L  +  +  
Sbjct: 121 KPVLLVATKIDDPKHEAYLGSFYALGFGEPVPTSAAHSRGFDELLERIWALLPIRQGESE 180

Query: 371 FSIPSHK 377
             +   +
Sbjct: 181 PEVVPIR 187


>gi|256820197|ref|YP_003141476.1| GTP-binding protein EngA [Capnocytophaga ochracea DSM 7271]
 gi|256581780|gb|ACU92915.1| small GTP-binding protein [Capnocytophaga ochracea DSM 7271]
          Length = 434

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 12/163 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +D+ + + + +  E      +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD 
Sbjct: 154 ELLDDLVALLPEKEKQE-ENTLPRFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR    +    E   + R+   +E++D+ +L+ +     E 
Sbjct: 213 IDTKYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSIRAIEHSDVCILMLDATRGFES 272

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
                  ++       + +  K DL            ++   E
Sbjct: 273 QDANIFWLAQRNRKGIVILVNKWDLVEKENNTAKQYEAAIRKE 315



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L K+  AIV  + G TRD      D  G    + DT G +   
Sbjct: 5   VAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVSFSVIDTGGYLAGG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS--- 329
           DD  EKE  K+  L ++ AD I+ +  +         S  E+    +   +    K    
Sbjct: 65  DDSFEKEINKQVALAIDEADAIIFMVNVEEGLTGMDESVAELLRKCHKPILVAVNKVDSN 124

Query: 330 ----DLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               D++  Y   ++HL   SS  G G  EL++ + ++L  K K+   ++P
Sbjct: 125 NRRNDMHEFYALGFEHLYALSSVNGSGTGELLDDLVALLPEKEKQEENTLP 175


>gi|285018364|ref|YP_003376075.1| GTP-binding protein enga [Xanthomonas albilineans GPE PC73]
 gi|283473582|emb|CBA16085.1| probable gtp-binding protein enga [Xanthomonas albilineans]
          Length = 465

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 41/250 (16%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF-----------LKN 201
            L      W+ KL      +   +D ++E+ V+   ++  L + +            L +
Sbjct: 98  SLDDEILSWLRKLARPTILLINKIDGTDEDQVRAEFARYGLGEAIAVSAAHRQGIDDLLD 157

Query: 202 DISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
            + + + +   GE +       +I  +G  N GKS+L N L  ++  I +D+PGTTRD +
Sbjct: 158 HVLARLPEEGAGETLDTDPGRMRIAFVGRPNVGKSTLVNRLLGEERMIASDVPGTTRDSI 217

Query: 259 TIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN------ 309
            +DL+ +    ++ DTAG+R     ++ VEK  + +T   +E  ++ +LL + +      
Sbjct: 218 AVDLERDDRPYRLIDTAGLRRRGRVEEAVEKFSVFKTLQAIEQCEVAVLLLDASEGVTDQ 277

Query: 310 --SKKEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEGL 351
             S            +    K D  + Y  E                    IS+  G GL
Sbjct: 278 DASVLGAILDAGRALVVAVNKWDGLTDYQREQAEALLSRKLGFVPWAEAVRISAKHGSGL 337

Query: 352 EELINKIKSI 361
            EL   I + 
Sbjct: 338 RELFRAIHNA 347



 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G  N GKS+LFNAL +   A+V D PG TRD       L       I DT GI   
Sbjct: 5   VALVGRPNVGKSTLFNALTRSRDALVHDQPGVTRDRHYGVCRLQPETPFVIVDTGGISGE 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSD-- 330
           ++ +      +       ADL+L + +          + +S+ +      I +  K D  
Sbjct: 65  EEGLAGATASQARAAAGEADLVLFVVDGREGASSLDDEILSWLRKLARPTILLINKIDGT 124

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                   ++ Y       +S+   +G+++L++ + + L  +
Sbjct: 125 DEDQVRAEFARYGLGEAIAVSAAHRQGIDDLLDHVLARLPEE 166


>gi|240146998|ref|ZP_04745599.1| ribosome-associated GTPase EngA [Roseburia intestinalis L1-82]
 gi|257200843|gb|EEU99127.1| ribosome-associated GTPase EngA [Roseburia intestinalis L1-82]
 gi|291535193|emb|CBL08305.1| ribosome-associated GTPase EngA [Roseburia intestinalis M50/1]
 gi|291539724|emb|CBL12835.1| ribosome-associated GTPase EngA [Roseburia intestinalis XB6B4]
          Length = 441

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++  +  +    E      K+ I+G  N GKSSL N LA++D  IV+DI GTTRD 
Sbjct: 156 DMLDEVVKNFPEYNKDEAEDERPKVAIIGKPNVGKSSLINKLAQEDRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  D+   G      DTAG+R  +   + +E+  I R    VE AD+ +++ +       
Sbjct: 216 IDTDIRYNGKEYVFIDTAGLRRKNKIKEEIERYSIIRAVTAVERADVCIIVIDATEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSD------------------LYSTYTEEYDHLISSFTG 348
                  I+  +    I    K D                  + S         IS+ +G
Sbjct: 276 QDAKIAGIAHERGKGIIIAVNKWDAIEKDDKTIYRHTEKIRQILSFMPYAEILFISAKSG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + I  ++ N   ++   + +
Sbjct: 336 QRLNKLFDMIDLVIENNSMRVATGVLN 362



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 19/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  D+    Y   + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGERISIVKDTPGVTRDRIYADVTWLDYHFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLY 332
            DI+  +  ++  + +  AD+I+ L ++    + S  K            + +  K D +
Sbjct: 66  KDIILSQMREQAEIAIATADVIIFLTDVRQGLQDSDSKVADMLRRSGKPVVLVVNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             +  +            + IS+ +  GL ++++++        K  
Sbjct: 126 EKFMPDVYEFYNLGIGDPYPISASSMLGLGDMLDEVVKNFPEYNKDE 172


>gi|126653372|ref|ZP_01725476.1| GTP-binding protein EngA [Bacillus sp. B14905]
 gi|126589888|gb|EAZ84019.1| GTP-binding protein EngA [Bacillus sp. B14905]
          Length = 436

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 30/247 (12%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I  +T+    L++  +            + +    +     L F 
Sbjct: 91  NGREGVTAADEQVAKILYKTKKPVVLAVNKIDNP------DMREMIYDFYA-----LGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E        S      +  L ++ + H  +    +   +  K  ++G  N GKSSL NA 
Sbjct: 140 E----PWPISGSHGLGLGDLLDECAKHFPKEDEEQYGDDVIKFSLIGRPNVGKSSLVNAF 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             +D  IV+DI GTTRD +      +     I DTAG+R+   I    EK  + R    +
Sbjct: 196 LGQDRVIVSDIAGTTRDAIDTPYAYDDQEYVIIDTAGMRKKGKIYETTEKYSVLRALRAI 255

Query: 297 ENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           E +D++L++       +    K            + +  K D      E+ +  ++ FT 
Sbjct: 256 ERSDVVLVVMNAEEGIQEQDKKIAGYAHEAGKAVVIVVNKWDAI----EKDEKTMNVFTQ 311

Query: 349 EGLEELI 355
           +  E  +
Sbjct: 312 QIREHFL 318



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSD--- 330
           +   ++  ++  + +E AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLEQIRQQAEIAIEEADVIIFMTNGREGVTAADEQVAKILYKTKKPVVLAVNKIDNPD 125

Query: 331 ----LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKK 368
               +Y  Y   +      S   G GL +L+++       + ++
Sbjct: 126 MREMIYDFYALGFGEPWPISGSHGLGLGDLLDECAKHFPKEDEE 169


>gi|282908791|ref|ZP_06316609.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282327055|gb|EFB57350.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus WW2703/97]
          Length = 348

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + SH  + +      +  ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD 
Sbjct: 66  DLLDAVVSHFGEEEEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDA 125

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   +G    + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 126 IDTEYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIE 185

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 186 QDKRVAGYAHEQGKAVVIVVNKWDTVEK 213


>gi|255065190|ref|ZP_05317045.1| ribosome-associated GTPase EngA [Neisseria sicca ATCC 29256]
 gi|255050611|gb|EET46075.1| ribosome-associated GTPase EngA [Neisseria sicca ATCC 29256]
          Length = 535

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  +I     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 205 LIEEILEKFPEPEAEEADVKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 264

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 265 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 324

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 325 DATIAGFALEAGRALVVAVNKWDGISEERREQIKRDISRKLYFLDFAKFHFISALKERGI 384

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 385 DGLFDSIQAAYNAAMIKMPTPKITR 409



 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 55  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGFEPVV 114

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+TF  V+ AD ++ L +  +          +              K    
Sbjct: 115 DSGILHEMAKQTFQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 174

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                 ++ Y     E  H+IS   G+G+  LI +I         + 
Sbjct: 175 NRAVLAAEFYELALGE-PHVISGAHGDGVYYLIEEILEKFPEPEAEE 220


>gi|1518044|gb|AAB62738.1| ThdF protein [Borrelia burgdorferi]
          Length = 140

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 7/135 (5%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59
            + I A++T  L SA+ +IR SG S       I          +     +G      +G 
Sbjct: 8   DDDIVALATPFLSSALCVIRSSGASSISKFSKIFSNHSALNSASGNTIHYGYILDSENGC 67

Query: 60  ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119
            +D+ ++ ++ +P+SFTG+D+ E   HG +  +  I++ L      R+A PGEF+ RAF 
Sbjct: 68  KVDEVVVCLY-APKSFTGQDAIEVMAHGSVIGIKKIID-LFLKSGFRMAEPGEFTLRAFL 125

Query: 120 NGKIDLLEAESLADL 134
             KIDL +AE++ ++
Sbjct: 126 AKKIDLTKAEAIHEI 140


>gi|323343319|ref|ZP_08083546.1| ribosome-associated GTPase EngA [Prevotella oralis ATCC 33269]
 gi|323095138|gb|EFZ37712.1| ribosome-associated GTPase EngA [Prevotella oralis ATCC 33269]
          Length = 458

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 18/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD      +  G    + DT G +  +
Sbjct: 26  VAIVGRPNVGKSTLFNRLTQSRKAIVSDTAGTTRDRQYGKCNWNGREFSVVDTGGWVVNS 85

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           DDI E    ++  +  E AD+++ L +             +I     +  + +  K D  
Sbjct: 86  DDIFEDAIRRQVLVATEEADIVIFLVDTMTGVTDWDEDVAQILRRSKLPVLLVANKVDNS 145

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           S Y +  D           +S+ TG G  +L++ + + L              
Sbjct: 146 SDYYQAADFYRLGLGDPVCVSAATGGGTGDLLDLLITKLKTDDFDDVQDDIPR 198



 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 13/216 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + + +      ++  +  +  ++G  N GKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 175 DLLDLLITKLKTDDFDDVQDDIPRFAVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDS 234

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    D  G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 235 IYTRFDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRSIENSDVCILMIDATRGIEA 294

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                  +    N   + +  K DL     +       +   E +   ++      S   
Sbjct: 295 QDMNIFQLIQKNNKSLVVVVNKWDLVENKDQNVIKTFENAIRERMAPFVDFPIIFASALT 354

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           K+  F +    + +Y   +   ++  + LNE    +
Sbjct: 355 KQRIFKVLETAKQVYLNRKA--HVGTSKLNEVMLPI 388


>gi|73662580|ref|YP_301361.1| GTP-binding protein EngA [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642627|sp|Q49XS9|DER_STAS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|72495095|dbj|BAE18416.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 436

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 11/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  H  + +      +  ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD 
Sbjct: 154 DLLDAVVKHFKEEEPDPYDDDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   +     + DTAG+R+   +    EK  + R    +E +++IL++ +       
Sbjct: 214 VDTEYSYDDQDYVLIDTAGMRKKGKVYENTEKYSVLRALKAIERSNVILIVIDAEQGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE 337
                   +  +    + +  K D     T 
Sbjct: 274 QDKRVAGYAHEEGKAIVIVVNKWDTVDKETN 304



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + ++ AD+I+ +  +            ++ +      +    K D   
Sbjct: 66  APFQTQIRAQAEVAIDEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK 368
              E YD           IS   G GL +L++ +      +   
Sbjct: 126 MRNEIYDFYSLGFGDPYPISGSHGLGLGDLLDAVVKHFKEEEPD 169


>gi|148546131|ref|YP_001266233.1| GTP-binding protein EngA [Pseudomonas putida F1]
 gi|166225843|sp|A5VYT9|DER_PSEP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|148510189|gb|ABQ77049.1| small GTP-binding protein [Pseudomonas putida F1]
          Length = 487

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 32/204 (15%)

Query: 201 NDISSHISQGKLGEII-----RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
             +   +++G+    I     ++G KI I+G  N GKS+L N +  ++  +V D PGTTR
Sbjct: 169 EALEQDVAEGEEAVRIPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDEPGTTR 228

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK- 311
           D + I  + +G      DTAG+R+   I    EK  + +T   +++A++++ + +     
Sbjct: 229 DSIYIPFERDGDKYTFIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGV 288

Query: 312 -------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTG 348
                     +       +    K D        Y                 H IS+  G
Sbjct: 289 VDHDLNLLGFALEAGRAIVIALNKWDGMEPGERAYVKTELERRLFFVDFADIHFISALHG 348

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
            G+  L   +++   +   + P S
Sbjct: 349 TGVGNLYKSVQAAFQSAVTRWPTS 372



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L K   AIV D+ G TRD    D   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ + +E AD +L L +  +          E    +N   I +  K D
Sbjct: 65  VGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKAAILVANKID 121


>gi|319936463|ref|ZP_08010879.1| GTP-binding protein engA [Coprobacillus sp. 29_1]
 gi|319808578|gb|EFW05130.1| GTP-binding protein engA [Coprobacillus sp. 29_1]
          Length = 435

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 12/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I   + + +         +  I+G  N GKSSL NAL  ++  IV+DI GTTRD 
Sbjct: 154 DILDQIIHLMPESEDHREEDE-IRFSIIGRPNVGKSSLTNALLGEERVIVSDIEGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +    + +G   ++ DTAG+R+   +    EK  I R    VE +D++L++ +     + 
Sbjct: 213 IDTAFEKDGQKYRVIDTAGMRKKGKVYENIEKYSILRALSAVEKSDVVLVVIDGERGVVE 272

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST 334
             K +   +       I +  K DL   
Sbjct: 273 QDKHVAGNAHEAGRGVILVVNKWDLVQK 300



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 21/170 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G +N GKS++FN +  + V+IV DIPG TRD +  +        ++ DT GI   D
Sbjct: 6   VAIVGRANVGKSTIFNRIVGERVSIVEDIPGVTRDRIYANASWLTRDFRLIDTGGIELED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----------NIDFIFIGTKSDL 331
               ++   +  + +E AD+IL +  +N ++ I+                 +    K D 
Sbjct: 66  ASFTEQIKMQAEIAIEEADVILFV--VNGREGITREDAFVARMLQKSKKPIVLAVNKIDD 123

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  YD            S   G G+ +++++I  ++          
Sbjct: 124 QVYKDNIYDFYNLGVGDPIAVSGSHGIGIGDILDQIIHLMPESEDHREED 173


>gi|317504953|ref|ZP_07962902.1| ribosome-associated GTPase EngA [Prevotella salivae DSM 15606]
 gi|315663945|gb|EFV03663.1| ribosome-associated GTPase EngA [Prevotella salivae DSM 15606]
          Length = 437

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 18/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD              I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCSWNSKEFSIVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E    ++  +  E ADL+L L ++++           I     +  I +  K D  
Sbjct: 65  DDIFEDAIRRQVLVATEEADLVLFLVDVSTGVTDWDEDVAMILRRAKLPVILVANKVDNN 124

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKK 368
           S Y E  +           IS+ TG G  +L++ I   L  +  +
Sbjct: 125 SEYYEAAEFYKLGLGEPQCISAATGGGTGDLLDLIIDKLPQENPE 169



 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 11/170 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I   + Q     +     +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DLLDLIIDKLPQENPESVEEEIPRFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    D  G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYDKFGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRAIENSDVCILMLDATRGVEA 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  +        + +  K DL    +++  +   +     +   ++
Sbjct: 274 QDMNIFQLIQKNKKSLVVVVNKWDLVEDKSQKAINTFEAAIRNRMAPFVD 323


>gi|229029283|ref|ZP_04185373.1| GTP-binding protein engA [Bacillus cereus AH1271]
 gi|229172241|ref|ZP_04299805.1| GTP-binding protein engA [Bacillus cereus MM3]
 gi|228611229|gb|EEK68487.1| GTP-binding protein engA [Bacillus cereus MM3]
 gi|228732031|gb|EEL82923.1| GTP-binding protein engA [Bacillus cereus AH1271]
          Length = 436

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++ ++H  + +         +  ++G  N GKSSL NAL  ++  IV++I GTTRD 
Sbjct: 154 DLLDEAANHFPKIEEEAYDDETIRFSLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +      +G    I DTAG+R+   +    EK  + R    +E +D++L++ +     I 
Sbjct: 214 VDTPYSKDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIE 273

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST 334
             K+I   +       I +  K D    
Sbjct: 274 QDKKIAGYAHDSGRAVIIVVNKWDAVKK 301



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
             ++ YD           IS   G GL +L+++  +   
Sbjct: 126 MRSDIYDFYALGFGEPFPISGTHGLGLGDLLDEAANHFP 164


>gi|313668681|ref|YP_004048965.1| GTP-binding protein [Neisseria lactamica ST-640]
 gi|313006143|emb|CBN87604.1| putative GTP-binding protein [Neisseria lactamica 020-06]
          Length = 485

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  +I  +  + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 155 LIEEILENFPEPEAEEADAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKEHGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 335 DGLFDSIQAAYNAAMIKMPTPKITR 359



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 62/158 (39%), Gaps = 20/158 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                 ++ Y     E  H+IS   G+G+  LI +I  
Sbjct: 125 NRAVLAAEFYELALGE-PHVISGAHGDGVYYLIEEILE 161


>gi|295426288|ref|ZP_06818948.1| ribosome-associated GTPase EngA [Lactobacillus amylolyticus DSM
           11664]
 gi|295064027|gb|EFG54975.1| ribosome-associated GTPase EngA [Lactobacillus amylolyticus DSM
           11664]
          Length = 436

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN + K+ +AIV D PG TRD      +  G+   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTLFNRIIKERLAIVEDEPGVTRDRNYAQAEWMGHNFDLIDTGGITWED 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
             +E+E   +  + ++ AD+I++       + +++ +  ++ +      I    K+D   
Sbjct: 66  GKIEEEIRAQAEIAIDEADVIVMLCSVVNGVTDLDERVAQLLYRTKKPIILAINKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370
              E YD           +S   G G+ +L++KI S    +  K  
Sbjct: 126 LRAEVYDFYSLGLGDPIPVSGSHGTGIGDLLDKIVSKFPRELDKKD 171



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 88/208 (42%), Gaps = 31/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I S   + +L +  ++     ++G  N GKSS+ N L  +   IV +  GTTRD 
Sbjct: 154 DLLDKIVSKFPR-ELDKKDKDTISFSVIGRPNVGKSSIVNKLLGEKRVIVANQEGTTRDA 212

Query: 258 LTIDLD-LEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK-- 311
           +       +G   ++ DTAGIR    +    EK  + R    ++ +D+ LL+ + ++   
Sbjct: 213 IDTPFIGKDGTKFRLIDTAGIRRRGKVYEKTEKYSVMRALSAIDRSDVALLVLDASTGIR 272

Query: 312 ------KEISFPKNIDFIFIGTKSDLYST-----------YTEEYDH-------LISSFT 347
                    +       I +  K D+                +E+ +        +S+ T
Sbjct: 273 EQDKHVAGYAHDAGRGLIIVVNKWDIPKKDSGSGKDFEQVIRQEFQYLDYAPILFVSAKT 332

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPS 375
           G+ L+++   +K +  N+ +++  S+ +
Sbjct: 333 GQRLDQIPEIVKEVYKNENQRIQSSVLN 360


>gi|172035176|ref|YP_001801677.1| GTP-binding protein EngA [Cyanothece sp. ATCC 51142]
 gi|226706247|sp|B1X0B0|DER_CYAA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|171696630|gb|ACB49611.1| GTP-binding protein [Cyanothece sp. ATCC 51142]
          Length = 452

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 70/177 (39%), Gaps = 12/177 (6%)

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
              I+A   +          S    +    L + + +++         R    + I+G  
Sbjct: 127 MGLIQAAEFWELGLGEPYPISGIHGSGTGELLDQLITYLPSPDE-LPDREEINVSIIGRP 185

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---E 285
           N GKSSL NA   +  AIV+ I GTTRD +   ++      ++ DTAGIR   ++    E
Sbjct: 186 NVGKSSLLNAFLGEQRAIVSPISGTTRDAIDTVVERGDNTYRLIDTAGIRRKKNVNYGAE 245

Query: 286 KEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLYST 334
              I R F  +  AD++LL+ +       ++I        +    I +  K D    
Sbjct: 246 FFSINRAFKAIRRADVVLLVIDAIDGVTDQDIKLADRIIDEGRAAIIVVNKWDAVEK 302



 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LAK   AIV D PG TRD             ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLAKDRQAIVHDQPGITRDRTYRPAFWCDRDFQVVDTGGLVFDD 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLY 332
           D        ++    +  A   + + +         +EIS     + +  +    K +  
Sbjct: 66  DTEFLPLIREQAMAALTEASAAIFVVDGQLGPTAGDREISDWLRRQKVPVLLAVNKCESP 125

Query: 333 S----------TYTEEYDHLISSFTGEGLEELINKIKSILS 363
                             + IS   G G  EL++++ + L 
Sbjct: 126 EMGLIQAAEFWELGLGEPYPISGIHGSGTGELLDQLITYLP 166


>gi|19703515|ref|NP_603077.1| GTP-binding protein EngA [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|26006718|sp|Q8RGV7|DER_FUSNN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|19713605|gb|AAL94376.1| GTP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 440

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 93/241 (38%), Gaps = 35/241 (14%)

Query: 132 ADLISSETEMQRRLSMEGMS------------GELSSLYGQWIDKLTHIRSFIEADLD-- 177
            D + ++ + Q  ++M                  L       + K           +D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124

Query: 178 FSEEEDVQNFS----------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           F +++DV +F           S E   ++  + + +   I +    E      K+ ++G 
Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVDIIGKMDFPEEDEEVLKLAVIGK 184

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIV 284
            NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR     ++ +
Sbjct: 185 PNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRKSKVEESL 244

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           E   + R    ++ AD+ +L+ +              I+  +    I +  K DL     
Sbjct: 245 EYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIVMNKWDLVENKN 304

Query: 337 E 337
            
Sbjct: 305 N 305



 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   IAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D +   F G G E L+
Sbjct: 123 -NFFEQQDDVY-DFYGLGFEYLV 143


>gi|67922213|ref|ZP_00515727.1| Small GTP-binding protein domain:GTP-binding [Crocosphaera watsonii
           WH 8501]
 gi|67855916|gb|EAM51161.1| Small GTP-binding protein domain:GTP-binding [Crocosphaera watsonii
           WH 8501]
          Length = 465

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 12/175 (6%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            I+A   +          S    N    L +++ +++         R    + I+G  N 
Sbjct: 142 LIQAAEFWELGLGEPYPVSGIHGNGTGELLDELITYLPSPDE-LPDREEINVSIIGRPNV 200

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKE 287
           GKSSL NA   K  AIV+ I GTTRD +   ++      ++ DTAGIR   ++    E  
Sbjct: 201 GKSSLLNAFLGKKRAIVSPISGTTRDAIDTVVERGEKTYRLIDTAGIRRKKNVNYGAEFF 260

Query: 288 GIKRTFLEVENADLILLLKEI---NSKKEISFP-----KNIDFIFIGTKSDLYST 334
            I R F  +  AD++LL+ +     + ++I        +    I +  K D    
Sbjct: 261 SINRAFKAIRRADVVLLVIDAIEGVTDQDIKLADRIIDEGRAAIIVVNKWDAIDK 315



 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N LAK   AIV D PG TRD             ++ DT G+   D
Sbjct: 19  VAIIGRPNVGKSTFVNRLAKDRQAIVHDEPGITRDRTYRPAFWADRDFQVVDTGGLVFDD 78

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIG--TKSDLY 332
           +        ++    +  A + + + +          +   + +  +   +    K +  
Sbjct: 79  ETEFLPLIREQAMAALTEASVAIFVVDGQLGLTAGDSEIADWLRQQEVPVLLAVNKCESP 138

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILS 363
                +               S   G G  EL++++ + L 
Sbjct: 139 DQGLIQAAEFWELGLGEPYPVSGIHGNGTGELLDELITYLP 179


>gi|260771392|ref|ZP_05880317.1| GTP-binding protein EngA [Vibrio furnissii CIP 102972]
 gi|260613518|gb|EEX38712.1| GTP-binding protein EngA [Vibrio furnissii CIP 102972]
 gi|315180972|gb|ADT87886.1| GTP-binding protein [Vibrio furnissii NCTC 11218]
          Length = 495

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 108/276 (39%), Gaps = 38/276 (13%)

Query: 133 DLISSETEMQRRLSME-----GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           D I +ET       +       ++       G  ID+  +  +      + +  ED+  F
Sbjct: 121 DGIDAETASAEFWQLGVDQMFQIAAAHGRGVGALIDRALNPLAEQMQQEEAA-LEDLTGF 179

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
              E    +     D +   ++     +     K+ I+G  N GKS+L N +  ++  +V
Sbjct: 180 VDAEQEEKL-----DYTEEEAEEAYKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVV 234

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILL 304
            D+PGTTRD + I +  +     + DTAG+R    I    EK  + +T   +E+A+++LL
Sbjct: 235 YDMPGTTRDSIYIPMQRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLKAIEDANVVLL 294

Query: 305 LKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYTEEYD----------- 340
           + +     S +++S            +    K      D+     +E D           
Sbjct: 295 VVDARENISDQDLSLLGFALNAGRSIVIAVNKWDGLDTDVKERVKKELDRRLGFVDFARI 354

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           H IS+  G G+  L   ++    +   ++  S+ + 
Sbjct: 355 HFISALHGTGVGHLFESVQEAYRSATTRVGTSVLTR 390



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 74/169 (43%), Gaps = 17/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           + VE +   ++   ++ AD++L + +  +   ++             + I +  K D   
Sbjct: 65  EGVETKMAAQSLAAIDEADVVLFMVDGRAGLTVADEAIANHLRRVEKNAILVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
             T   +            ++  G G+  LI++  + L+ + ++   ++
Sbjct: 125 AETASAEFWQLGVDQMFQIAAAHGRGVGALIDRALNPLAEQMQQEEAAL 173


>gi|256027086|ref|ZP_05440920.1| GTP-binding protein [Fusobacterium sp. D11]
 gi|289765066|ref|ZP_06524444.1| GTP-binding protein [Fusobacterium sp. D11]
 gi|289716621|gb|EFD80633.1| GTP-binding protein [Fusobacterium sp. D11]
          Length = 440

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 35/241 (14%)

Query: 132 ADLISSETEMQRRLSMEGMS------------GELSSLYGQWIDKLTHIRSFIEADLD-- 177
            D + ++ + Q  ++M                  L       + K           +D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124

Query: 178 FSEEEDVQNFS----------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           F +++DV +F           S E   ++  + + +   I +    E   +  K+ ++G 
Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVDIIGKMDFPEEEEDVLKLAVIGK 184

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIV 284
            NAGKSSL N L+ ++  IV+DI GTTRD +   ++ +     I DTAGIR     ++ +
Sbjct: 185 PNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRKSKVEESL 244

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           E   + R    ++ AD+ +L+ +              I+  +    I +  K DL     
Sbjct: 245 EYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIVMNKWDLVENKN 304

Query: 337 E 337
            
Sbjct: 305 N 305



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D +   F G G E L+
Sbjct: 123 -NFFEQQDDVY-DFYGLGFEYLV 143


>gi|238752471|ref|ZP_04613947.1| GTP-binding protein engA [Yersinia rohdei ATCC 43380]
 gi|238709320|gb|EEQ01562.1| GTP-binding protein engA [Yersinia rohdei ATCC 43380]
          Length = 494

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 94/240 (39%), Gaps = 29/240 (12%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
           +L         D +  E E     ++          ++ I     +    + +    K+ 
Sbjct: 153 QLIEDVMAPYMDAEEPEVELTDEEANAAYWAAQEEDEDAIPE--DEEDDFDPLSLPIKLA 210

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-- 281
           I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+    
Sbjct: 211 IVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKRGKI 270

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLY 332
            + VEK  + +T   +E+++++LL+ +     S +++S            +    K D  
Sbjct: 271 TEAVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWDGM 330

Query: 333 STYTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           S                       H IS+  G G+  L   I+       K++  S+ + 
Sbjct: 331 SEEARTQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCSTKRVGTSLLTR 390



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 19/209 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           D VE +   ++ L +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             T   D         H I++  G G+ +LI  +  +      + P    + +       
Sbjct: 125 PDTATADFYSLGLGEVHAIAASHGRGVTQLIEDV--MAPYMDAEEPEVELTDEEANAAYW 182

Query: 385 QTVRYLEMASLNEKDCGLDIIAENLRLAS 413
                 E A   +++   D ++  ++LA 
Sbjct: 183 AAQEEDEDAIPEDEEDDFDPLSLPIKLAI 211


>gi|293115597|ref|ZP_05792245.2| ribosome-associated GTPase EngA [Butyrivibrio crossotus DSM 2876]
 gi|292809015|gb|EFF68220.1| ribosome-associated GTPase EngA [Butyrivibrio crossotus DSM 2876]
          Length = 446

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 23/176 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++  H  +    +      +I I+G  N GKSS+ N +  +   IV+DI GTTRD 
Sbjct: 161 DMLDEVVKHFPESAAEDEEDERPRIAIVGKPNVGKSSIINKIVGESRVIVSDIAGTTRDA 220

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  D+   G      DTAG+R  + I    E+  I RT   VE AD++L++ +       
Sbjct: 221 IDTDITYNGNEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLVVIDATEGVTE 280

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  I+  +    I +  K D                  + + E  N+IK IL
Sbjct: 281 QDAKIAGIAHERGKGIIVVVNKWDAIEK------------NDKTIYEHTNRIKDIL 324



 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 9/122 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+    Y   + DT GI  E+
Sbjct: 11  VAIVGRPNVGKSTLFNALAGEQISIVKDTPGVTRDRIYADVTWLNYNFTLIDTGGIEPES 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLY 332
            DI+  +  ++  + + +AD+I+ + ++      S  K            + +  K D +
Sbjct: 71  KDIILSQMREQAEIAIASADVIIFMVDVRQGLVDSDSKVANMLRRSGKPVVLVVNKVDSF 130

Query: 333 ST 334
             
Sbjct: 131 QK 132


>gi|330957531|gb|EGH57791.1| GTP-binding protein Der [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 489

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 192 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 251

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   I    EK  + +T   +++A++++ + +               +       +  
Sbjct: 252 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 311

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D  +    ++                 H IS+  G G+  L   +++   +   + 
Sbjct: 312 LNKWDGMTPGERDFVKIELERRLFFVDFADIHFISALHGTGVGNLYQSVQNSFKSAVTRW 371

Query: 370 PFS 372
           P S
Sbjct: 372 PTS 374



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  K++ L +E AD++L L +  +          E    +N     +  K D
Sbjct: 65  HGMDEKMAKQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKID 121


>gi|323489679|ref|ZP_08094906.1| GTP-binding protein Der [Planococcus donghaensis MPA1U2]
 gi|323396810|gb|EGA89629.1| GTP-binding protein Der [Planococcus donghaensis MPA1U2]
          Length = 436

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 15/150 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++++ +  Q    E   N  K  ++G  N GKSSL N+   ++  IV+++ GTTRD 
Sbjct: 154 DLLDEVAKNFPQDDDEEYPDNVIKFSLIGRPNVGKSSLVNSFLGEERVIVSEVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    +       I DTAG+R+   +    EK  + R    +E +D++L++  +N+++ I
Sbjct: 214 IDTQYEYNEQPYVIIDTAGMRKKGKVYETTEKYSVLRALRAIERSDVVLVV--LNAEEGI 271

Query: 315 ----------SFPKNIDFIFIGTKSDLYST 334
                     +       I I  K D    
Sbjct: 272 QEQDKKIAGYAHEAGKAVIIIVNKWDAIEK 301



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV DIPG TRD +    D   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRVVGERVSIVEDIPGVTRDRIYSSADWLTHEFNIIDTGGIDLRD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           +   ++  ++  + ++ AD+I+ L               +I +      I    K D   
Sbjct: 66  EPFLEQIRQQAEIAMDEADVIIFLVNGRDGVTNQDEQVAKILYKTKKPVILAVNKIDNPD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKI-KSILSNKFKKLPFSIP 374
                YD            S   G GL +L++++ K+   +  ++ P ++ 
Sbjct: 126 MRHMIYDFYTLGMGEPFPLSGSHGLGLGDLLDEVAKNFPQDDDEEYPDNVI 176


>gi|37222112|gb|AAP49306.1| Uvs063 [uncultured bacterium]
          Length = 435

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 27/205 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +     +    E   +  +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD 
Sbjct: 154 DLLDALIDAFPEKPEVEAKEDLPRFAVVGRPNAGKSSFINALIGQDRYIVTDIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    D  G+   + DTAGIR    +    E   + R+   +E+AD+ +L+ +     E 
Sbjct: 214 IDTKFDRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSVRAIEHADICILVIDATRGFEG 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                  ++       + +  K DL    T                +   KIK  L   F
Sbjct: 274 QDQSIFWLAEKNRKGVVILVNKWDLVEKDT------------MSTRDYEEKIKKELM-PF 320

Query: 367 KKLPFSIP---SHKRHLYHLSQTVR 388
             +P       + +R L  L  TV+
Sbjct: 321 TDVPILFVSALTKQRLLKALEATVQ 345



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 18/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++  AIV  + G TRD      +  G    + DT G +R +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYVRGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DD+ E E  K+  L ++ AD+I+ + ++            ++        +    K D  
Sbjct: 65  DDVFEGEIRKQVELAIDEADVIIFVVDVEEGITPMDETVAKLLRKVTKPVLLAVNKVDNA 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFK 367
               +  +            +S +G G  +L++ +      K +
Sbjct: 125 MREKDAIEFYNLGLGDYFTFASISGSGTGDLLDALIDAFPEKPE 168


>gi|227513321|ref|ZP_03943370.1| GTP-binding protein EngA [Lactobacillus buchneri ATCC 11577]
 gi|227083194|gb|EEI18506.1| GTP-binding protein EngA [Lactobacillus buchneri ATCC 11577]
          Length = 435

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 34/206 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I     + + G +  +  +  I+G  N GKSSL NA+  ++  IV+D+ GTTRD 
Sbjct: 154 DLLDKIVEKFPK-ETGNVPNDDIRFSIIGRPNVGKSSLVNAILGENRVIVSDVAGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    + +     + DTAGIR+   +    E+  + R    ++ +D+IL +  IN+++ I
Sbjct: 213 IDTRFEADNIKFTMVDTAGIRKRGKVYENTERYSVMRAMKAIDQSDVILFV--INAEEGI 270

Query: 315 ----------SFPKNIDFIFIGTKSDLYST-----------YTEEYDHL-------ISSF 346
                     +       I +  K D                  E+ ++       +S+ 
Sbjct: 271 REQDKKVAGYAHEAGKAIITVVNKWDTLKKTNHTQQDFETLIRNEFQYMAYSPIIFVSAK 330

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS 372
           T + +E+L   IK +  N  K++  S
Sbjct: 331 TKQRIEQLPALIKRVYDNHEKRVQSS 356



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G  N GKS++FN +A   ++IV D PG TRD +    +       + DT GI+ +D
Sbjct: 6   VAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTHAEWLANEFAMIDTGGIQISD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFIGTKSDLYS 333
                +   +  + +E AD+I+ +         +     +I +  +   +    K+D   
Sbjct: 66  APFNTQIKNQAEIAIEEADVIVFIVSAKEGLTSDDEQVAKILYRSDKPVVLAVNKADNPD 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370
              + YD           IS   G G+ +L++KI      +   +P
Sbjct: 126 AREDIYDFYALGFGDPMPISGVHGTGIGDLLDKIVEKFPKETGNVP 171


>gi|206579507|ref|YP_002237139.1| GTP-binding protein EngA [Klebsiella pneumoniae 342]
 gi|206568565|gb|ACI10341.1| GTP-binding protein EngA [Klebsiella pneumoniae 342]
          Length = 498

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 211 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRK 270

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D+VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 271 RGKITDVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 330

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 331 WDGLSQEVKEQVKETLDYRLGFIDFARVHFISALHGSGVGNLFESVREAYDSATRRVSTA 390

Query: 373 IPSH 376
           + + 
Sbjct: 391 MLTR 394



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 11  VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE    +++ L +E AD++L + +  +     +I+  K+          +  K+D   
Sbjct: 71  EGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADIAIAKHLRSREKPTFLVANKTDGID 130

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINK 357
                 D           I++  G G+  L+ +
Sbjct: 131 VDQAMADFWSLGLGDIYPIAASHGRGVTSLLEQ 163


>gi|152971372|ref|YP_001336481.1| GTP-binding protein EngA [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238895966|ref|YP_002920702.1| GTP-binding protein EngA [Klebsiella pneumoniae NTUH-K2044]
 gi|262040248|ref|ZP_06013499.1| ribosome-associated GTPase EngA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330007822|ref|ZP_08306080.1| ribosome biogenesis GTPase Der [Klebsiella sp. MS 92-3]
 gi|166198723|sp|A6TCD0|DER_KLEP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|150956221|gb|ABR78251.1| GTP-binding protein EngA [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238548284|dbj|BAH64635.1| GTP-binding protein EngA [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259042357|gb|EEW43377.1| ribosome-associated GTPase EngA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535310|gb|EGF61796.1| ribosome biogenesis GTPase Der [Klebsiella sp. MS 92-3]
          Length = 492

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 205 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRK 264

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D+VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 265 RGKITDVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 324

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 325 WDGLSQEVKEQVKETLDYRLGFIDFARVHFISALHGSGVGNLFESVREAYDSATRRVSTA 384

Query: 373 IPSH 376
           + + 
Sbjct: 385 MLTR 388



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE    +++ L +E AD++L + +  +     +I+  K+          +  K+D   
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADIAIAKHLRSREKPTFLVANKTDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINK 357
                 D           I++  G G+  L+ +
Sbjct: 125 VDQAMADFWSLGLGDIYPIAASHGRGVTSLLEQ 157


>gi|260773381|ref|ZP_05882297.1| GTP-binding protein EngA [Vibrio metschnikovii CIP 69.14]
 gi|260612520|gb|EEX37723.1| GTP-binding protein EngA [Vibrio metschnikovii CIP 69.14]
          Length = 496

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 119/291 (40%), Gaps = 35/291 (12%)

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRL--SMEGMSGELSSLYGQWIDKLTHIRSFI 172
           RR  +N  + + + + +    +     Q  +   M  ++          ID+  +  +  
Sbjct: 107 RRIEKNAILVVNKVDGIDADAACAEFWQLGMGSQMYQIAAAHGRGVAVLIDRALNPLAEQ 166

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
             +    E +++++ +     ++   L+       ++ K   +     K+ I+G  N GK
Sbjct: 167 MNE----ELQNLEDLTEFVDTDEPEQLEYTEEEAEAEFKR--LQDQPIKLAIIGRPNVGK 220

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGI 289
           S+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R     ++ VEK  +
Sbjct: 221 STLTNRILGEERVVVYDMPGTTRDSIYIPMQRDDREYVLIDTAGVRRRKSINETVEKFSV 280

Query: 290 KRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKS-----DLYSTYT 336
            +T   +E+A+++LL+ +     S +++S            +    K      D+     
Sbjct: 281 VKTLKAIEDANVVLLVIDARENISDQDLSLLGFTLNAGRSVVIAINKWDGLSNDIKERVK 340

Query: 337 EEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           +E D           H IS+  G G+  L   ++    +   ++  S+ + 
Sbjct: 341 KELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYRSATTRVGTSVLTR 391



 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 73/172 (42%), Gaps = 22/172 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L      + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGENEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +     + +  ++      + I +  K D   
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFMVDGRAGLTSADEAIAQHLRRIEKNAILVVNKVDGID 124

Query: 334 TYTEEYDHLI----------SSFTGEGLEELINK----IKSILSNKFKKLPF 371
                 +             ++  G G+  LI++    +   ++ + + L  
Sbjct: 125 ADAACAEFWQLGMGSQMYQIAAAHGRGVAVLIDRALNPLAEQMNEELQNLED 176


>gi|312869092|ref|ZP_07729266.1| ribosome biogenesis GTPase Der [Lactobacillus oris PB013-T2-3]
 gi|311095338|gb|EFQ53608.1| ribosome biogenesis GTPase Der [Lactobacillus oris PB013-T2-3]
          Length = 437

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHGEWLGKNFNMIDTGGIELSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +  +  ++  + ++ AD+I+L+ ++ S           I +  N   +    K D   
Sbjct: 66  QPLLTQIRQQAEIAIDEADVIVLVVDVESGVTDADEQVARILYRSNKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G GL +L++ +                
Sbjct: 126 RRNDIYDFYSLGLGEPYPVSSVHGVGLGDLLDAVIHNFPENAANEDDDSI 175



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 89/212 (41%), Gaps = 36/212 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  +  +    E   +  +  ++G  N GKSSL N +  ++  IV+++ GTTRD 
Sbjct: 154 DLLDAVIHNFPENAANE-DDDSIRFSLIGRPNVGKSSLVNGILGENRVIVSNMAGTTRDA 212

Query: 258 LTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +    +  +G    + DTAGIR+   I    E+  + R    ++ +D++L++  +N+++ 
Sbjct: 213 INTRFVAKDGQEFTMIDTAGIRKQGKIYENTERYALMRAMRAIDGSDVVLVV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYSTYTEE-------------------YDHLIS 344
           I          +       I +  K D      +                        +S
Sbjct: 271 IREIDKHIAGYAHEAGCGVIIVVNKWDTLEERDQRTMTDFTNLIRHEFQYLSYAPIIFVS 330

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           + T + L +L   I+ + ++  +++  S+ ++
Sbjct: 331 AKTKQRLNKLPEMIEEVYAHHERRIKSSVLNN 362


>gi|222100021|ref|YP_002534589.1| GTP-binding protein engA [Thermotoga neapolitana DSM 4359]
 gi|254783174|sp|B9K8E0|DER_THENN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|221572411|gb|ACM23223.1| GTP-binding protein engA [Thermotoga neapolitana DSM 4359]
          Length = 439

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 33/223 (14%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           D    S++  +N    ++  I     +G   +    I    KI I+G  N GKS+LFNA+
Sbjct: 141 DPIPVSAEHSINLDTLMEKIIQKLEEKGLDLETKPEITEAIKIAIVGRPNVGKSTLFNAI 200

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV----EKEGIKRTFLE 295
             K+ A+V+ IPGTTRD +  ++ ++G      DTAG+R    I     E+    R    
Sbjct: 201 LNKERALVSPIPGTTRDPVDDEVFIDGKKYIFVDTAGLRRKSRIEPKTVERYSTYRVVES 260

Query: 296 VENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD------- 340
           +E AD+ +++ +              +   K    + +  K DL     + YD       
Sbjct: 261 IERADVAVIVLDATQGITRQDQRIAGLVERKGKASVVVFNKWDLVEHREKRYDEFTKLFR 320

Query: 341 -----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                         S+  G G+E++I+ I    S+   K+P S
Sbjct: 321 EKLYFVDYSPLIFTSADKGWGVEKIIDAINLAYSSYTTKVPSS 363



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 20/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++I+G  N GKS+LFN L +K  AIV D  G TRD +   ++  G   ++ DT G+ +  
Sbjct: 4   VLIVGKPNVGKSTLFNKLVRKRKAIVEDEEGVTRDPVQDTVEWYGKTFRLVDTCGVFDNP 63

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
            D++ K+  + T   +  ADL+L + +          S  +      +D I +  K++  
Sbjct: 64  QDVISKKMKEVTLNMIREADLVLFVVDGKNGITKEDESLADFLRKSGVDVILVANKTENQ 123

Query: 333 STYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +  E               +S+     L+ L+ KI   L  K   L  
Sbjct: 124 RRFEREIKPELYRLGFGDPIPVSAEHSINLDTLMEKIIQKLEEKGLDLET 173


>gi|222528757|ref|YP_002572639.1| GTP-binding protein EngA [Caldicellulosiruptor bescii DSM 6725]
 gi|222455604|gb|ACM59866.1| small GTP-binding protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 440

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 11/192 (5%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
           ++K+ +I         +          S E    +  + + + +++++  + EI     K
Sbjct: 118 VNKIDNISQQAMIYEFYELGLSDPIAMSAEHGTGVGDVLDAVVNYLNKEGINEIEEGTIK 177

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +  ++  IV+DIPGTTRD +    + EG  + + DTAG+R   
Sbjct: 178 VAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTFEFEGIPITLIDTAGLRRKS 237

Query: 282 DIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            I    E+  + RT   +E +D+ ++L +               ++      I    K D
Sbjct: 238 KIYDNVERYSMLRTLQAIERSDICIILLDGTENVSEQDAKVAGYAYEAGKGCIVAVNKWD 297

Query: 331 LYSTYTEEYDHL 342
                 +  D  
Sbjct: 298 AVEKDEKTADEY 309



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  +  AIV D PG TRD +  + +  G    + DT GI   +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPYS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           +DI+ K+  ++    ++ +D+I+ + +      ++ +E++          +    K D  
Sbjct: 65  EDIILKQMRRQAQFAIDMSDVIIFMVDGKTGLTDADREVANMLRTSKKPIVLAVNKIDNI 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
           S     Y+           +S+  G G+ ++++ + + L+ +    
Sbjct: 125 SQQAMIYEFYELGLSDPIAMSAEHGTGVGDVLDAVVNYLNKEGINE 170


>gi|331081965|ref|ZP_08331093.1| GTP-binding protein engA [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330405560|gb|EGG85090.1| GTP-binding protein engA [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 441

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 81/207 (39%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +   +  H       +      KI ++G  N GKSSL N +  +D  IV++I GTTRD 
Sbjct: 156 DMLEKVVEHFDDDAQNDEEDEIPKIAVVGKPNVGKSSLINKILGEDRVIVSNIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +  +G      DTAG+R  + I    E+  I RT   VE AD+++++ +       
Sbjct: 216 IDTKVTYQGKEYTFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVVMMIDATEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEY------------------DHLISSFTG 348
                  I+  +    +    K D      +                       IS+ TG
Sbjct: 276 QDAKIAGIAHDRGKGVVIAVNKWDAIEKNDKTIYKFTNKVRETLSYMPYAEIMFISAHTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + + +L   I  +L N+  ++   + +
Sbjct: 336 QRIPKLFETIDMVLENQTLRIQTGVLN 362



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 76/170 (44%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  ++        + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYAEVTWLDKTFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +D++  +  ++  + ++ AD+I+ + ++            ++        + +  K D +
Sbjct: 66  NDVILSQMREQAQIAIDTADVIIFMTDVRQGLVDADSKVADMLRRSKKPVVLVVNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +  +              IS+ +  GL +++ K+     +  +     
Sbjct: 126 QKFMMDTYEFYNLGIGEPVPISAASMLGLGDMLEKVVEHFDDDAQNDEED 175


>gi|153809063|ref|ZP_01961731.1| hypothetical protein BACCAC_03371 [Bacteroides caccae ATCC 43185]
 gi|149128396|gb|EDM19615.1| hypothetical protein BACCAC_03371 [Bacteroides caccae ATCC 43185]
          Length = 437

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKSRRAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +DDI E+E  K+  L V+ AD+IL + ++ +           I    N   I +  K+
Sbjct: 62  VNSDDIFEEEIRKQVLLAVDEADVILFVVDVMNGVTDLDMQVATILRRANSPVIVVANKT 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D   L     E Y       + IS+ TG G  +L++ I      +  ++
Sbjct: 122 DNNELQYNAPEFYKLGLGDPYCISAITGSGTGDLMDLIVGKFKKESSEI 170



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 86/205 (41%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I     +     +     +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DLMDLIVGKFKKESSEILDDEIPRFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR+ + +    E   + R+   +E +D+ +L+ +     E 
Sbjct: 214 IYTRYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRAIEGSDVCILMLDATRGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDL-------------------YSTYTEEYDHLISSFT 347
                  +        + +  K DL                   ++ + +      S+ T
Sbjct: 274 QDLNIFSLIQKNQKGLVVVINKWDLVEDKSVKVQKTFEEAVRSRFAPFVDFPIIFASALT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + +++ + +++  N+  K+P +
Sbjct: 334 KQRILKVLEEARNVYENRTTKIPTA 358


>gi|77362053|ref|YP_341627.1| GTP-binding protein EngA [Pseudoalteromonas haloplanktis TAC125]
 gi|123744148|sp|Q3ICZ9|DER_PSEHT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|76876964|emb|CAI89181.1| GTP-binding protein, essential for cell growth in E. coli and B.
           subtilis, regulates ribosome synthesis
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 487

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 101/261 (38%), Gaps = 44/261 (16%)

Query: 143 RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND 202
             ++     G ++ L  Q +  L    + ++ D+   +EE +  +      +      + 
Sbjct: 141 HHIAASHGRG-ITLLLEQTLQPLIAELAALDEDVSNDDEELIDLYQEDSEDDSHQAFADK 199

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
                             K+ I+G  N GKS+L N +  ++  IV D+PGTTRD + I +
Sbjct: 200 ----------------PVKLAIIGRPNVGKSTLTNRILGEERVIVYDMPGTTRDSIYIPM 243

Query: 263 DLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF 316
                   + DTAG+R+     D+VEK  + +T   +E+ +++LL+ +     S +++S 
Sbjct: 244 TRNDKEYILIDTAGVRKRKKVSDVVEKFSVIKTLQAIEDCNVVLLVVDARAGISDQDLSL 303

Query: 317 P-----KNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELI 355
                      +    K D    Y ++                  H IS+  G G+  L 
Sbjct: 304 LGFALNSGRSLVIAVNKWDGLDDYVKDRIKSELDRRLGFIDFARLHFISALHGTGVGHLF 363

Query: 356 NKIKSILSNKFKKLPFSIPSH 376
             +     +  K++  ++   
Sbjct: 364 ESVDEAYESATKRISTAMLRR 384



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 17/181 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD      + +GY   + DT GI  ++
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYEFIVVDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + +E E   ++ L +E AD++L L +       + + I+     +      +  K+D   
Sbjct: 65  EGIEIEMADQSLLAIEEADIVLFLVDARVGMTVADQAIANHLRKQEKKCFVVANKTDGID 124

Query: 334 T---------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                      +    H I++  G G+  L+ +    L  +   L   + +    L  L 
Sbjct: 125 ADSNCAEFYQLSLGEIHHIAASHGRGITLLLEQTLQPLIAELAALDEDVSNDDEELIDLY 184

Query: 385 Q 385
           Q
Sbjct: 185 Q 185


>gi|312128144|ref|YP_003993018.1| ribosome-associated gtpase enga [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778163|gb|ADQ07649.1| ribosome-associated GTPase EngA [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 440

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 11/192 (5%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
           ++K+ +I         +          S E    +  + + + +++++  + EI     K
Sbjct: 118 VNKIDNISQQAMIYEFYELGLSDPIAMSAEHGTGVGDVLDAVVNYLNKEGINEIEEGTIK 177

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +  ++  IV+DIPGTTRD +    + EG  + + DTAG+R   
Sbjct: 178 VAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTFEFEGIPITLIDTAGLRRKS 237

Query: 282 DIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            I    E+  + RT   +E +D+ ++L +               ++      I    K D
Sbjct: 238 KIYDNVERYSMLRTLQAIERSDICIILLDGTENVSEQDAKVAGYAYEAGKGCIVAVNKWD 297

Query: 331 LYSTYTEEYDHL 342
                 +  D  
Sbjct: 298 AVEKDEKTADEY 309



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  +  AIV D PG TRD +  + +  G    + DT GI   +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPYS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           +DI+ K+  ++    ++ +D+I+ + +      ++ +E++          +    K D  
Sbjct: 65  EDIILKQMRRQAQFAIDMSDVIIFMVDGKTGLTDADREVANMLRTSKKPIVLAVNKIDNI 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
           S     Y+           +S+  G G+ ++++ + + L+ +    
Sbjct: 125 SQQAMIYEFYELGLSDPIAMSAEHGTGVGDVLDAVVNYLNKEGINE 170


>gi|291533878|emb|CBL06991.1| ribosome-associated GTPase EngA [Megamonas hypermegale ART12/1]
          Length = 401

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 15/168 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++I ++  +    +I  +  +I ++G  N GKSSL NAL  ++  IV+D+ GTTRD 
Sbjct: 114 DLLDEIVANFPKDLEDDIEHDEIRIAVIGRPNVGKSSLVNALLGQERVIVSDVAGTTRDA 173

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +    D       + DTAG+R     D  +E+  + R+   V+ AD++L++         
Sbjct: 174 IDTKFDDGNTHFTLIDTAGMRRKGKIDMPIERYSVMRSLRAVDRADVVLMVISAPEGVTE 233

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
                   +       I +  K DL     E+ D     FT +  +EL
Sbjct: 234 QDKKIAGYAHESGKGCIIVVNKWDLI----EKDDKTSLRFTEDIRDEL 277



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 20/128 (15%)

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKE---GIKRTFLEVENADLILLLKEIN-----SKK 312
           D +   +   + DT GI   +D   K      ++  L +E AD+I+ + +         +
Sbjct: 2   DAEWLNHQFTMIDTGGIELENDGEGKILASMRQQARLAIEEADVIVFMVDGRTGMTHDDE 61

Query: 313 EISFPKNIDFIFIG---TKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKS 360
           EI          +     K D    + + Y+            S+     + +L+++I +
Sbjct: 62  EIGHILRNTRKPVIVAVNKIDSPKQHLDVYEFYNLGLGEPIGISAANALNVGDLLDEIVA 121

Query: 361 ILSNKFKK 368
                 + 
Sbjct: 122 NFPKDLED 129


>gi|149183701|ref|ZP_01862112.1| GTP-binding protein EngA [Bacillus sp. SG-1]
 gi|148848583|gb|EDL62822.1| GTP-binding protein EngA [Bacillus sp. SG-1]
          Length = 436

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 26/226 (11%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+ +   I   ++    L++  +         +  +       +    L F 
Sbjct: 91  NGREGVTAADEIVAKILYRSKKPVVLAVNKIDNP------EMRE-----LVYDFYSLGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E        S      +  + ++++ +  +        +  K  ++G  N GKSSL NAL
Sbjct: 140 E----PFPISGAHGIGLGDMLDEVAKNFKKDSGEGYAEDVIKFSLIGRPNVGKSSLVNAL 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             +D  IV+++ GTTRD +   L ++G    I DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEDRVIVSNVAGTTRDAIDSKLKVDGQEYVIIDTAGMRKKGKVYESTEKYSVLRALRAI 255

Query: 297 ENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST 334
           E +D++L++ +     I   K+I   +       I +  K D    
Sbjct: 256 ERSDVVLVVIDGEEGIIEQDKKIAGYAHEAGRGVIIVVNKWDAVEK 301



 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    D   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSADWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +   ++  ++  + ++ AD+I+ L      + +  E    I +      +    K D   
Sbjct: 66  EPFLEQIRQQAEIAIDEADVIVFLTNGREGVTAADEIVAKILYRSKKPVVLAVNKIDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                YD           IS   G GL ++++++         + 
Sbjct: 126 MRELVYDFYSLGFGEPFPISGAHGIGLGDMLDEVAKNFKKDSGEG 170


>gi|332879048|ref|ZP_08446757.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332682997|gb|EGJ55885.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 437

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 11/150 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I S   +    E   N  +  ++G  NAGKSSL NA   ++  IVTDI GTTRD 
Sbjct: 154 ELLDLIVSKFPKTTDDETDENIPRFAVVGRPNAGKSSLINAFIGEERNIVTDIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +       G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYTKFGFDFYLVDTAGIRRKNKVTEDLEYYSVMRSIRAIENSDVCILMLDAERGIEA 273

Query: 315 SFP--------KNIDFIFIGTKSDLYSTYT 336
                       N   + +  K DL    T
Sbjct: 274 QDLNIFQLIQRNNKSLVVVVNKWDLVENKT 303



 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 18/176 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L +   AIV+D  GTTRD      +  G    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTQTRHAIVSDEAGTTRDRQYGKSEWTGREFSVIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
             +DDI E+E  K+  L  E AD+IL L ++         +   I        I +  K+
Sbjct: 62  VNSDDIFEEEIRKQVTLATEEADVILFLVDVRNGLTDLDEAVANILRRTKKPVILVANKA 121

Query: 330 DL---------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           D          +        + IS+ TG G  EL++ I S                
Sbjct: 122 DTNEWIYSAAEFYALGLGDPYCISAATGSGTGELLDLIVSKFPKTTDDETDENIPR 177


>gi|325954552|ref|YP_004238212.1| GTP-binding protein engA [Weeksella virosa DSM 16922]
 gi|323437170|gb|ADX67634.1| GTP-binding protein engA [Weeksella virosa DSM 16922]
          Length = 435

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 11/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++       +  +      +I I+G  NAGKS+L NAL  ++  IVTD+ GTTRD 
Sbjct: 154 DLLDEVVDSFETKEFEDKFEGLPRIAIVGRPNAGKSTLINALLGEERNIVTDVAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAG+R+   +    E   + R    +E  D+ +L+ + +   E 
Sbjct: 214 IETLYNKFGHKFVLVDTAGMRKKGKVAEDLEFYSVMRAIRTIEECDVCVLVVDGSRGLEA 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTE 337
                  ++       + +  K DL    T 
Sbjct: 274 QDLNILYLAERNRKGVVILVNKWDLVEKQTN 304



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L +K  AIV D+ G TRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRLVQKRQAIVDDVSGVTRDRHYGKSDWNGVEFTVIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISF---PKNIDFIFIGTKSDLY 332
           +D  E+E  K+  L V+ A++IL + +      +  KE+S            +  K D  
Sbjct: 65  EDTFEEEIRKQVELAVDEANVILFMVDNQVGLTDMDKEVSHLLRKAKKKTFLVVNKVDTN 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
               + Y+           I++ +G G  +L++++      K
Sbjct: 125 KNLDDSYEFYTLGFDKIFTIAAISGSGTGDLLDEVVDSFETK 166


>gi|257453165|ref|ZP_05618464.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
 gi|257467370|ref|ZP_05631681.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 438

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 27/205 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +   I + +  E   +  K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD 
Sbjct: 155 DMLDMVVDIIGKLEFPEEEEDILKLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++ +     I DTAGIR     ++ +E   + R    ++ AD+ LL+ +       
Sbjct: 215 IDTLIEYKENRYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCLLMLDAQEGLTE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLY-----STYTEEY-----------DHLISSFTGEG 350
                  I+  +    + +  K DL        Y EE               +S+ TG+ 
Sbjct: 275 QDKRIAGIAAEERKPIVIVMNKWDLVKNKDMKKYKEELYAELPFLSYAPIEFVSALTGQR 334

Query: 351 LEELINKIKSILSNKFKKLPFSIPS 375
             +L+    +I     K++   + +
Sbjct: 335 TTKLLEIADTIYEEYTKRISTGLLN 359



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L    VAIV D+PG TRD L  + +  G    + DT G+   +
Sbjct: 5   VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 64

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSD 330
           +      IK +  + +  AD+IL + +  +           I   K    +    K D
Sbjct: 65  NEFMMTKIKEQAEVAMNEADVILFVVDGKAGLNPLDEEVAYILRKKQKPVVLCVNKID 122


>gi|296126458|ref|YP_003633710.1| ribosome-associated GTPase EngA [Brachyspira murdochii DSM 12563]
 gi|296018274|gb|ADG71511.1| ribosome-associated GTPase EngA [Brachyspira murdochii DSM 12563]
          Length = 484

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 19/203 (9%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQN--------FSSKEVLNDILFLKNDISSHISQ 209
                +K+  +   I  DL+   EE +          ++S+++  +   L  +   +  +
Sbjct: 151 IDDLREKILEVLERIGVDLEAEREEQINQIKDSNKSSYNSEKMDIEYNELLEEYDEYDEE 210

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
             + E       I I+G  NAGKS+L N L  KD +IV+DI GTTRD +    + +G  +
Sbjct: 211 STIEEDENKIINIAIVGKPNAGKSTLLNTLIGKDRSIVSDIAGTTRDAIDETFNFKGDDI 270

Query: 270 KISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPK 318
            + DTAGIR+  ++    E   + R    +E++D+ +L+ ++     +  K I+     +
Sbjct: 271 CLVDTAGIRKKKNVNTDVEYYSVNRAIKAIESSDVCILMLDVFEGLTDQDKTIANLIIER 330

Query: 319 NIDFIFIGTKSDLYSTYTEEYDH 341
               +    K D+    T   D+
Sbjct: 331 KKGIVIAANKWDIREKGTTWNDY 353



 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 21/184 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
            I ILG  N GKS+LFN  A +  +IV    G TRD+      ++     + DT G+ + 
Sbjct: 3   NIAILGRPNVGKSTLFNRFAGRRKSIVDPTAGVTRDISMSLAYIDDIAFNVFDTGGLLDI 62

Query: 280 TDDIVEKEGIKRTFL-EVENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDL 331
           +DD + ++  ++      E+AD++L L + +           I        I +  K D 
Sbjct: 63  SDDTLNEKVREKALKTAAEDADILLFLVDAHQSHPDDRHFINIIRKSGKPIILVINKVDA 122

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
            S      +           IS+    G+++L  KI  +L      L       +  +  
Sbjct: 123 DSHNNLINEFYSLGINDVVPISAEHNNGIDDLREKILEVLERIGVDLE---AEREEQINQ 179

Query: 383 LSQT 386
           +  +
Sbjct: 180 IKDS 183


>gi|167749166|ref|ZP_02421293.1| hypothetical protein EUBSIR_00117 [Eubacterium siraeum DSM 15702]
 gi|167657844|gb|EDS01974.1| hypothetical protein EUBSIR_00117 [Eubacterium siraeum DSM 15702]
 gi|291530430|emb|CBK96015.1| ribosome-associated GTPase EngA [Eubacterium siraeum 70/3]
          Length = 439

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG  + ++G  N GKS+LFN +  K ++IV D PG TRD +    +  G    + DT GI
Sbjct: 2   NGI-VAVVGRPNVGKSTLFNRIVGKRMSIVDDTPGVTRDRIYAKAEWLGKEFMLVDTGGI 60

Query: 278 R-ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
             ++ D++  +   +  L ++ AD+I+ + ++ S           +        +    K
Sbjct: 61  EPDSKDVILSQMRMQAQLAIDKADVIIFVTDVTSGVTANDADVAAMLQKSGKPVVLCVNK 120

Query: 329 SDLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D       E+             +SS  G G  +L++ +   +  +  +  +S
Sbjct: 121 CDGIGEVPPEFYEFYNLGLGDPIAVSSVHGHGTGDLLDAVFENMPEENPQREYS 174



 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 29/181 (16%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +    E   +  K+ ++G  NAGKSSL N +A +   IV++I GTTRD +   ++ +G 
Sbjct: 166 EENPQREYSEDAIKVAVIGKPNAGKSSLVNKIAGEQRMIVSNIAGTTRDAVDTVIERDGQ 225

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISF 316
              + DTAGIR    +    EK  + R ++ V+ AD+ +++ +               + 
Sbjct: 226 EYVLIDTAGIRRKSKVNEQIEKYSVLRAYMAVDRADVCVIMIDATEGFTEQDSKVAGYAH 285

Query: 317 PKNIDFIFIGTKSDLYS---------TYTEEYDH---------LISSFTGEGLEELINKI 358
            +    +    K D            T   E D           IS+ TG+ +++L  +I
Sbjct: 286 EQGKASVIAINKWDAVEKDGKTMQEFTKKLEVDFSFMSYAPFVFISALTGQRVDKLFEQI 345

Query: 359 K 359
           K
Sbjct: 346 K 346


>gi|298207544|ref|YP_003715723.1| GTP-binding protein EngA [Croceibacter atlanticus HTCC2559]
 gi|83850180|gb|EAP88048.1| GTP-binding protein EngA [Croceibacter atlanticus HTCC2559]
          Length = 434

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN + ++  AI   I G TRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRMIQRREAITDAISGVTRDRHYGKADWNGKEFTLIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E+E  K+  L ++ AD+IL + ++ S          ++    N   + +  K D  
Sbjct: 65  DDIFEQEIDKQVELAIDEADVILFMVDVTSGITGMDEDVAKLLRRSNKPMMLVVNKVDNA 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             + +  +         H I S  G G  +L++++  IL  K ++   S+P
Sbjct: 125 ERHADAVEFYNLGLGEYHAIGSMNGAGTGDLLDELVKILPEKEEREEDSLP 175



 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 12/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++   + + +  E   +  +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD 
Sbjct: 154 DLLDELVKILPEKEEREED-SLPRFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDS 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR    +    E   + R+   +E+AD+ LL+ +     + 
Sbjct: 213 IDTKYNRFGFEFNLVDTAGIRRKTKVKEDLEFYSVMRSVRAIEHADVCLLVMDATRGFDN 272

Query: 314 -------ISFPKNIDFIFIGTKSDLYST 334
                  ++       + +  K DL   
Sbjct: 273 QVQNIFWLAERNRKGIVILVNKWDLVEK 300


>gi|315918500|ref|ZP_07914740.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059700|ref|ZP_07924185.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
 gi|313685376|gb|EFS22211.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
 gi|313692375|gb|EFS29210.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 442

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 27/205 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +   I + +  E   +  K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD 
Sbjct: 159 DMLDMVVDIIGKLEFPEEEEDILKLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDA 218

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++ +     I DTAGIR     ++ +E   + R    ++ AD+ LL+ +       
Sbjct: 219 IDTLIEYKENRYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCLLMLDAQEGLTE 278

Query: 312 -----KEISFPKNIDFIFIGTKSDLY-----STYTEEY-----------DHLISSFTGEG 350
                  I+  +    + +  K DL        Y EE               +S+ TG+ 
Sbjct: 279 QDKRIAGIAAEERKPIVIVMNKWDLVKNKDMKKYKEELYAELPFLSYAPIEFVSALTGQR 338

Query: 351 LEELINKIKSILSNKFKKLPFSIPS 375
             +L+    +I     K++   + +
Sbjct: 339 TTKLLEIADTIYEEYTKRISTGLLN 363



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L    VAIV D+PG TRD L  + +  G    + DT G+   +
Sbjct: 9   VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 68

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSD 330
           +      IK +  + +  AD+IL + +  +           I   K    +    K D
Sbjct: 69  NEFMMTKIKEQAEVAMNEADVILFVVDGKAGLNPLDEEVAYILRKKQKPVVLCVNKID 126


>gi|183599734|ref|ZP_02961227.1| hypothetical protein PROSTU_03237 [Providencia stuartii ATCC 25827]
 gi|188021993|gb|EDU60033.1| hypothetical protein PROSTU_03237 [Providencia stuartii ATCC 25827]
          Length = 490

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 204 IKLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 263

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A+++LL+ +     S +++S            +    K
Sbjct: 264 RGKITETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNAGRSLVIAVNK 323

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D       E+                 H IS+  G G+  L   ++    +  +++  +
Sbjct: 324 WDGMKPEDREHVKDMLELRLGFVDFARIHFISALHGSGVGNLFESVEEAYESATRRVGTA 383

Query: 373 IPSH 376
           + + 
Sbjct: 384 LLTR 387



 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + VE     ++   +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  EGVETHMAAQSLQAIEEADVVLFMVDARAGLMPADEGIAKHLRSRKKKTYLVANKTDGID 124

Query: 334 T---------YTEEYDHLISSFTGEGLEELINK 357
                           H I++  G G+ +LI K
Sbjct: 125 ADSVIGDFYSLGLGEIHPIAASHGRGVTQLIEK 157


>gi|221133872|ref|ZP_03560177.1| GTP-binding protein EngA [Glaciecola sp. HTCC2999]
          Length = 481

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 117/273 (42%), Gaps = 44/273 (16%)

Query: 133 DLISSETEMQRRLSM-EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           D I  ++E     ++  G   ++++ +G+ + +L  +     A+ +F +   V+   + +
Sbjct: 121 DGIDGDSESADFYALGMGNVQQIAAAHGRGVAQLLDLTLSPLAE-NFPDMIAVEPERNDD 179

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             +    L              E ++N   K+ ++G  N GKS+L N +  ++  +V D 
Sbjct: 180 DEDAEKQL--------------ERLQNLPIKLAVVGKPNVGKSTLTNRILGEERVVVYDQ 225

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKE 307
           PGTTRD + I ++ +     + DTAG+R+    ++ VEK  I +T   +E A+++LL+ +
Sbjct: 226 PGTTRDSIFIPMERDEREYILIDTAGVRKRRKINEAVEKFSIVKTLQAIEEANVVLLVID 285

Query: 308 IN---SKKEISFP-----KNIDFIFIGTKSD-----LYSTYTEEYD-----------HLI 343
                S +++S            +    K D     +      E D           H I
Sbjct: 286 AREGISDQDLSLLGFILNAGRSLVLAVNKWDGLQAHVKDEIKRELDRRLGFVDFARLHFI 345

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           S+  G G+  L   ++    +  +++  S+ + 
Sbjct: 346 SALHGTGVGHLFESVQEAYESATRRINTSMLTR 378



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 17/188 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD       +E     + DT GI   +
Sbjct: 5   LALVGRPNVGKSTLFNRLTNTRDALVADFPGLTRDRKYGQAKVEDRQFIVIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             ++    +++ L ++ AD++L L +  +          E    +      +  K D   
Sbjct: 65  AGIDAAMAEQSLLAIDEADVVLFLVDARAGLTAADQGIAEYLRKQEKTVYVVANKVDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             +E  D           I++  G G+ +L++   S L+  F  +    P          
Sbjct: 125 GDSESADFYALGMGNVQQIAAAHGRGVAQLLDLTLSPLAENFPDMIAVEPERNDDDEDAE 184

Query: 385 QTVRYLEM 392
           + +  L+ 
Sbjct: 185 KQLERLQN 192


>gi|157961137|ref|YP_001501171.1| GTP-binding protein EngA [Shewanella pealeana ATCC 700345]
 gi|189037162|sp|A8H249|DER_SHEPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157846137|gb|ABV86636.1| small GTP-binding protein [Shewanella pealeana ATCC 700345]
          Length = 490

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 88/196 (44%), Gaps = 27/196 (13%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           ++ +   +     K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ +G 
Sbjct: 188 AEAEQKRLQDLPIKLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERQGR 247

Query: 268 LVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP---- 317
              + DTAG+R   +  + VEK  + +T   VE+++++LL+ +     +++++       
Sbjct: 248 EYVLIDTAGVRRRSKVHETVEKFSVIKTLKAVEDSNVVLLVIDAREGIAEQDLGLLGFVL 307

Query: 318 -KNIDFIFIGTKSD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKS 360
                 +    K D     +      E D           H IS+  G G+  L   I+ 
Sbjct: 308 NAGRALVIAINKWDGIDQNIKDRVKTELDRRLGFIDFARIHFISALHGTGVGHLFESIEE 367

Query: 361 ILSNKFKKLPFSIPSH 376
              +  +++  S+ + 
Sbjct: 368 AYDSATRRVSTSMLTR 383



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAHLAGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSD 330
           + +E    +++   +E AD++L L +  +     +++  ++          +  K D
Sbjct: 65  EGIETRMAEQSLAAIEEADVVLFLTDARAGLTAADLAIAQHLRSREKTTFVVANKVD 121


>gi|282855425|ref|ZP_06264746.1| ribosome-associated GTPase EngA [Pyramidobacter piscolens W5455]
 gi|282586721|gb|EFB91968.1| ribosome-associated GTPase EngA [Pyramidobacter piscolens W5455]
          Length = 443

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 30/209 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + +   +   +  +    G   + ++G  N GKSS+ NAL     ++V+DIPGTTRD
Sbjct: 153 ELLDQVVQMLGDKEDEQGPEEGVISVALVGRPNVGKSSILNALTGSQRSLVSDIPGTTRD 212

Query: 257 VLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            +   L+ +G   +I DTAG+R      D +E     RT   V+  D+ + + ++     
Sbjct: 213 SIDAVLEYKGERFRIVDTAGLRRKSRVKDDIEFYSTVRTMDAVDQCDVAIFVMDVRELAT 272

Query: 314 IS--------FPKNIDFIFIGTKSDLYSTYTEEYDH------------------LISSFT 347
                       +    + +  K DL     E  D                     S+ +
Sbjct: 273 EQDQRLVGEILARGKGVVLVVNKWDLLPNTPETGDEVNGKLREEFRFASHAPVLFTSAVS 332

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSH 376
           G  L  L++ +  +   +  +   ++ + 
Sbjct: 333 GRRLHRLLDLVSQVHRRRQSRFSTTVLNR 361



 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 18/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN +  +  AIV D+PG TRD L   +  +     + DT G+   D
Sbjct: 4   VSIVGRPNVGKSSLFNRIIGERRAIVDDMPGVTRDRLYGCVQWKDKSFYVVDTGGLLLKD 63

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLY 332
                EG+K + F  +E +D+++ + + +           ++    +   I    K D +
Sbjct: 64  KDPIMEGMKDQIFQAIEESDVVIFMVDGSRGVTWMDEDVAQVLRSHSSMVILAVNKIDDF 123

Query: 333 STYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           S   +         E    +S+    G++EL++++  +L +K  +
Sbjct: 124 SHEDDVAEAYSLGFEKVVGVSALHDRGIDELLDQVVQMLGDKEDE 168


>gi|119513020|ref|ZP_01632078.1| Small GTP-binding protein domain [Nodularia spumigena CCY9414]
 gi|119462337|gb|EAW43316.1| Small GTP-binding protein domain [Nodularia spumigena CCY9414]
          Length = 454

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 14/176 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++ SHI      E      K+ I+G  N GKSSL NA   ++ +IV+ I GTTRD 
Sbjct: 156 ELLDELISHIPIVTEVEEDNE-IKVAIIGRPNVGKSSLLNAFVGEERSIVSPISGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI-----N 309
           +   +     + ++ DTAGIR     D   E   I R F  +  AD++L++ +      +
Sbjct: 215 IDTVISRNDQVYRLIDTAGIRRKKQIDYGTEFFSINRAFKAIRRADVVLMVIDALDGVTD 274

Query: 310 SKKEIS---FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
             ++++     +    I +  K D      + Y       T E         ++I 
Sbjct: 275 QDQKLAGRIIDEGRACIIVVNKWDAIEK--DSYTIYDYEKTIESRLHFTEWAETIF 328



 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LA +  AIV D PG TRD   +          + DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYMPSYWRDRDFLVVDTGGLVFND 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIG--TKS--- 329
           D        ++    +  A   +L+ +       + ++  ++ +      +    K    
Sbjct: 66  DTEFLPLIRQQALTALSQASAAILVVDGQTGLTGSDQEIATWLRQQPVPVLLAVNKCESP 125

Query: 330 DLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILS 363
           D  +    E+        + IS+  G G  EL++++ S + 
Sbjct: 126 DQGAVQASEFWGLGLGEPYPISAIHGSGTGELLDELISHIP 166


>gi|289626149|ref|ZP_06459103.1| GTP-binding protein EngA [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649055|ref|ZP_06480398.1| GTP-binding protein EngA [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298486027|ref|ZP_07004101.1| GTP-binding protein EngA [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298159504|gb|EFI00551.1| GTP-binding protein EngA [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330869573|gb|EGH04282.1| GTP-binding protein Der [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 490

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   I    EK  + +T   +++A++++ + +               +       +  
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D  +    ++                 H IS+  G G+  L   +++   +   + 
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLFFVDFADIHFISALHGTGVGNLYQSVQNSFKSAVTRW 372

Query: 370 PFS 372
           P S
Sbjct: 373 PTS 375



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ L +E AD++L L +  +          E    +N     +  K D
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKID 121


>gi|313157956|gb|EFR57362.1| ribosome biogenesis GTPase Der [Alistipes sp. HGB5]
          Length = 434

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 18/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L  +  AIV    GTTRD      D  G    + DT G    +
Sbjct: 4   VAIVGRPNVGKSTLFNRLVGQRKAIVDATAGTTRDRHYGKTDWNGKEFSVIDTGGYTVNS 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +DI E E  ++  L ++ AD+IL L E+ +          +I    +   I +  K D  
Sbjct: 64  EDIFEDEIRRQVLLAIDEADVILFLVEVATGITDLDQLMADILRRTSKKVILVCNKVDNN 123

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                 ++           ISS +G G  +L++ I + L  +          H
Sbjct: 124 DQIYSSHEFYALGLGDPFCISSMSGSGTGDLMDAILAALPAETVPEEDEDLPH 176



 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I + +    + E   +   I I+G  N GKSS+ NAL  ++  IVT I GTTRD 
Sbjct: 153 DLMDAILAALPAETVPEEDEDLPHITIVGRPNVGKSSMTNALLGEERNIVTSIAGTTRDS 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    +  G    + DTAG+R+    +   E   + R+   +EN+D+ +L+ +     E 
Sbjct: 213 IHTRYNKFGMDFYLVDTAGMRKKGKAMEDLEFYSVMRSIRAIENSDVCILMLDAQQGLES 272

Query: 315 SFPKNIDFIF--------IGTKSDLYST 334
                 + I         +  K DL   
Sbjct: 273 QDLNIHNLIVRNRKGCVIVVNKWDLIEK 300


>gi|242240151|ref|YP_002988332.1| GTP-binding protein EngA [Dickeya dadantii Ech703]
 gi|242132208|gb|ACS86510.1| small GTP-binding protein [Dickeya dadantii Ech703]
          Length = 494

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 27/186 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+
Sbjct: 205 QPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYILIDTAGV 264

Query: 278 RETD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIG 326
           R+     D VEK  + +T   +E+A+++LL+ +     S +++S            + + 
Sbjct: 265 RKRGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVV 324

Query: 327 TKSDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            K D  S   +E                  H IS+  G G+  L   +        +++ 
Sbjct: 325 NKWDGLSQEIKEQVKETLDLRLGFIDFARIHFISALHGSGVGNLFESVDEAYECSTRRVG 384

Query: 371 FSIPSH 376
            ++ + 
Sbjct: 385 TAMLTR 390



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           D VE    +++   +E AD++L L +             +    +      +  K D   
Sbjct: 65  DGVETRMAEQSLQAIEEADIVLFLVDARDGLMPADHAIAQHLRTREKATFLVANKVDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELIN 356
             T   D           I++  G G+  L+ 
Sbjct: 125 IDTGIADFYSLGFGDVYPIAASHGRGVTSLLE 156


>gi|15676748|ref|NP_273893.1| GTP-binding protein EngA [Neisseria meningitidis MC58]
 gi|26006741|sp|Q9JZY1|DER_NEIMB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|7226088|gb|AAF41263.1| essential GTPase [Neisseria meningitidis MC58]
 gi|316984259|gb|EFV63235.1| small GTP-binding domain protein [Neisseria meningitidis H44/76]
 gi|325140003|gb|EGC62532.1| GTP-binding protein [Neisseria meningitidis CU385]
 gi|325200471|gb|ADY95926.1| GTP-binding protein [Neisseria meningitidis H44/76]
          Length = 485

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  DI     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 155 LIEDILEKFPEPEAEEADARHPVFAVIGRPNVGKSTLVNAILGEERVITFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 335 DGLFDSIQAAYNAAMIKMPTPKITR 359



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 60/166 (36%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                +  +        ++IS   G+G+  LI  I         + 
Sbjct: 125 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILEKFPEPEAEE 170


>gi|226328000|ref|ZP_03803518.1| hypothetical protein PROPEN_01891 [Proteus penneri ATCC 35198]
 gi|225203704|gb|EEG86058.1| hypothetical protein PROPEN_01891 [Proteus penneri ATCC 35198]
          Length = 343

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     I DTAG+R+
Sbjct: 56  VKLAIVGRPNVGKSTLTNRMLGEDRVVVYDMPGTTRDSIYIPMERDDKDYIIIDTAGVRK 115

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A++ LL+ +     S +++S            +    K
Sbjct: 116 RGKVKETVEKFSVIKTLQAIEDANVALLVIDAREGISDQDLSLLGYILNAGRSLVIAVNK 175

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  +    E                  H IS+  G G+  L   I+       +++  S
Sbjct: 176 WDGMTQDDREQVKAMLDLKLGFVDFARVHFISALHGSGVGNLFESIQEAYVCATRRVGTS 235

Query: 373 IPSH 376
           + + 
Sbjct: 236 MLTR 239


>gi|288934098|ref|YP_003438157.1| ribosome-associated GTPase EngA [Klebsiella variicola At-22]
 gi|290508296|ref|ZP_06547667.1| ribosome-associated GTPase EngA [Klebsiella sp. 1_1_55]
 gi|288888827|gb|ADC57145.1| ribosome-associated GTPase EngA [Klebsiella variicola At-22]
 gi|289777690|gb|EFD85687.1| ribosome-associated GTPase EngA [Klebsiella sp. 1_1_55]
          Length = 492

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 205 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRK 264

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D+VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 265 RGKITDVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 324

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 325 WDGLSQEVKEQVKETLDYRLGFIDFARVHFISALHGSGVGNLFESVREAYDSATRRVSTA 384

Query: 373 IPSH 376
           + + 
Sbjct: 385 MLTR 388



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE    +++ L +E AD++L + +  +     +I+  K+          +  K+D   
Sbjct: 65  EGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADIAIAKHLRSREKPTFLVANKTDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINK 357
                 D           I++  G G+  L+ +
Sbjct: 125 VDQAMADFWSLGLGDIYPIAASHGRGVTSLLEQ 157


>gi|258611783|ref|ZP_05711645.1| GTP-binding protein engA [Listeria monocytogenes FSL R2-503]
 gi|258606169|gb|EEW18777.1| GTP-binding protein engA [Listeria monocytogenes FSL R2-503]
          Length = 345

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 30/240 (12%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  + +A+     I   +     L++  +         +  D++     +    L F 
Sbjct: 91  NGREGVTDADEQVAKILYRSNKPIVLAINKVDNP------EMRDQI-----YDFYSLGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   S    L D+L   + + +H  + +  E   +  K  ++G  N GKSS+ NAL
Sbjct: 140 EPYPISG-SHGLGLGDML---DAVRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNAL 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             +D  IV+DI GTTRD +      +G    + DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           E +D++L++  IN+++ I          +       I +  K D  +   +  +      
Sbjct: 256 ERSDVVLVV--INAEEGIREQDKRIAGYAHDAGRAIIIVVNKWDAINKDEKTINVWTEDI 313



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +   ++   +  + ++ AD+I+        + + + +  +I +  N   +    K D   
Sbjct: 66  EPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
              + YD           IS   G GL ++++ +++    + ++ 
Sbjct: 126 MRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAVRAHFPKEEEEE 170


>gi|256846327|ref|ZP_05551784.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_36A2]
 gi|256718096|gb|EEU31652.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_36A2]
          Length = 440

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 107/284 (37%), Gaps = 40/284 (14%)

Query: 89  IAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSME 148
           IA+V+  L  + +    R A          + G ++        D + ++ + Q  ++M 
Sbjct: 27  IAIVDD-LPGVTRDRLYRDAEWSGSEFVIVDTGGLEPRN----NDFLMAKIKEQAEVAMN 81

Query: 149 GMS------------GELSSLYGQWIDKLTHIRSFIEADLD--FSEEEDVQNFS------ 188
                            L       + K           +D  F +++DV +F       
Sbjct: 82  EADVILFIVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNFFEQQDDVYDFYGLGFEY 141

Query: 189 ----SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S E   ++  + + +   I +    E      K+ ++G  NAGKSSL N L+ ++ 
Sbjct: 142 LVPISGEHKINLGDMLDIVVDIIGKMDFPEEDEEVLKLAVIGKPNAGKSSLVNKLSGEER 201

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADL 301
            IV+DI GTTRD +   ++ +     I DTAGIR     ++ +E   + R    ++ AD+
Sbjct: 202 TIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKAIKRADV 261

Query: 302 ILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTE 337
            +L+ +              I+  +    I +  K DL      
Sbjct: 262 CILMLDAKEGLTEQDKRIAGIAAEELKPIIIVMNKWDLVKNKNN 305



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDAEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  S      +EI++    KN   I    K D  
Sbjct: 65  NDFLMAKIKEQAEVAMNEADVILFIVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D +   F G G E L+
Sbjct: 123 -NFFEQQDDVY-DFYGLGFEYLV 143


>gi|28868645|ref|NP_791264.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213971514|ref|ZP_03399625.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato T1]
 gi|301386119|ref|ZP_07234537.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato Max13]
 gi|302060181|ref|ZP_07251722.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato K40]
 gi|302135124|ref|ZP_07261114.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|37999588|sp|Q886Y6|DER_PSESM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|28851883|gb|AAO54959.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213923706|gb|EEB57290.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato T1]
 gi|330872875|gb|EGH07024.1| GTP-binding protein Der [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330965919|gb|EGH66179.1| GTP-binding protein Der [Pseudomonas syringae pv. actinidiae str.
           M302091]
 gi|331019376|gb|EGH99432.1| GTP-binding protein Der [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 489

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 192 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 251

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   I    EK  + +T   +++A++++ + +               +       +  
Sbjct: 252 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 311

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D  +    ++                 H IS+  G G+  L   +++   +   + 
Sbjct: 312 LNKWDGMTPGERDFVKIELERRLFFVDFADIHFISALHGTGVGNLYQSVQNSFKSAVTRW 371

Query: 370 PFS 372
           P S
Sbjct: 372 PTS 374



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ L +E AD++L L +  +          E    +N     +  K D
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKID 121


>gi|315924473|ref|ZP_07920695.1| ribosome-associated GTPase EngA [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622352|gb|EFV02311.1| ribosome-associated GTPase EngA [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 440

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 11/166 (6%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D    S+++ L     L   + +  +  +L +       I ++G  NAGKS+L N L  +
Sbjct: 140 DPLPISAEQGLGLGDLLDAIVDNTAALYQLADDEDGSLHIAVVGKPNAGKSTLVNQLIGE 199

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENA 299
           +  IV+DIPGTTRD +   ++  G      DTAG+R      D VE+  I R    V+ A
Sbjct: 200 NRMIVSDIPGTTRDAIDSKIERGGVEYTFIDTAGLRRKSKIADEVERYSIIRAIAAVDRA 259

Query: 300 DLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTE 337
           D++L++    +           I+  + I  I +  K DL    T+
Sbjct: 260 DVVLMMVNAQTGVTEQDSKIAGIAHNRFIPTIIVVNKWDLIEKDTK 305



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 18/157 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + +AIV + PG TRD +  D + + +   + DT GI  +T
Sbjct: 5   VAVVGKPNVGKSTLFNKLVGERIAIVENTPGVTRDRIIADAEWQNHRFTLIDTGGIELKT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            + +  +   +  + +E ADLILLL +             ++   ++   I +  K D  
Sbjct: 65  GNTIMHQMRVQAEIAIETADLILLLCDGREGMTAADEDVADMLRKQHKKVIVVVNKLDSV 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKS 360
                 Y+            S+  G GL +L++ I  
Sbjct: 125 KLEERLYEFYNLGLGDPLPISAEQGLGLGDLLDAIVD 161


>gi|330894498|gb|EGH27159.1| GTP-binding protein Der [Pseudomonas syringae pv. mori str. 301020]
          Length = 490

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   I    EK  + +T   +++A++++ + +               +       +  
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D  +    ++                 H IS+  G G+  L   +++   +   + 
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLFFVDFADIHFISAMHGTGVGNLYQSVQNSFKSAVTRW 372

Query: 370 PFS 372
           P S
Sbjct: 373 PTS 375



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ L ++ AD++L L +  +          E    +N     +  K D
Sbjct: 65  HGMDEKMAEQSLLAIKEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKID 121


>gi|302185741|ref|ZP_07262414.1| GTP-binding protein EngA [Pseudomonas syringae pv. syringae 642]
 gi|330950783|gb|EGH51043.1| GTP-binding protein Der [Pseudomonas syringae Cit 7]
          Length = 490

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   I    EK  + +T   +++A++++ + +               +       +  
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D  +    ++                 H IS+  G G+  L   +++   +   + 
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLFFVDFADIHFISALHGTGVGNLYQSVQNSFKSAVTRW 372

Query: 370 PFS 372
           P S
Sbjct: 373 PTS 375



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ L +E AD++L L +  +          E    +N     +  K D
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKID 121


>gi|322381805|ref|ZP_08055759.1| EngA-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154193|gb|EFX46515.1| EngA-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 443

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 15/169 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L    S H  + + GE      ++ ++G  N GKSSL NA+  ++  IV+D  GTTRD 
Sbjct: 158 DLLEAASRHFPEEEDGEYGEEVIRVALIGRPNVGKSSLVNAILGEERVIVSDQAGTTRDA 217

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +    + +G    I DTAG+R+   +    EK  + R    +E AD++L++       I 
Sbjct: 218 IDTPFEKDGQKYVIIDTAGMRKRGKVYENTEKYSVMRALKAIERADVVLVVLNGEEGIIE 277

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
             K I   +       +F+  K D+     E+ D  +  FT    +  +
Sbjct: 278 QDKHIAGYAHEAGKAALFVVNKWDVV----EKDDKTMQRFTQNIRDHFL 322



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 18/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +    +AIV D PG TRD L    +       I DT GI    
Sbjct: 9   IAIVGRPNVGKSTIFNKIIGDRLAIVEDRPGVTRDRLYGIGEWMNREFSIIDTGGIEIDG 68

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +    + +K +  L +E +D+I+ + +  S          E+ +      +    K D  
Sbjct: 69  EDHIMKSVKVQAELAIEESDVIIFMVDAKSGLTPSDEEVAELLYRSRKPVVLAVNKVDNL 128

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
               E Y+           IS   G G+ +L+         +           
Sbjct: 129 KRQDEIYEFYGLGFGDPIPISGAHGLGIGDLLEAASRHFPEEEDGEYGEEVIR 181


>gi|289548228|ref|YP_003473216.1| ribosome-associated GTPase EngA [Thermocrinis albus DSM 14484]
 gi|289181845|gb|ADC89089.1| ribosome-associated GTPase EngA [Thermocrinis albus DSM 14484]
          Length = 430

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 17/164 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +++I+G  N GKS+LFN L  +   IV+ IPG TRD++   +  +     ++DT GI E 
Sbjct: 3   RVLIVGRPNVGKSTLFNRLVGRRKNIVSPIPGVTRDIVEAQVQWKDRKFIVADTGGIMEK 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D + +E   +    +  AD+IL + +             +I +P       +  K D  
Sbjct: 63  GDELTREVRDKVLKAIRKADVILFVVDGREGITASDQNIAKILYPYRDKVFLVVNKIDNK 122

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFK 367
           S     Y+           IS+  G G+ +L++ +   L    +
Sbjct: 123 SLEKNLYEFYSLGFERVFGISAEHGRGVGDLLDAVLPFLKEDEE 166



 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 27/210 (12%)

Query: 194 NDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
                + + + + +   K  E +   G K+  +G  N GKSSL NA+  ++  +V+ + G
Sbjct: 145 EHGRGVGDLLDAVLPFLKEDEELSYEGIKVSFVGRPNVGKSSLINAIMGEEKVLVSPVAG 204

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           TTRD + +  +  G    + DTAG+R   + +  VE   + R+   +E +D++ L+ ++ 
Sbjct: 205 TTRDAVELPFEYGGERFVLVDTAGMRRPSKVEYGVEFFSVGRSIKAIELSDVVCLVLDLT 264

Query: 310 SKK--------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------------HLISSF 346
                       +   +    + +G K DL  T   + +                  S+ 
Sbjct: 265 EGVTHQDQKIGGLIERRYRGCVIVGNKVDLVKTPPSQLESYIRQRLHFLDFAPVVFTSAI 324

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSH 376
              G+E+L+  I  + ++  K+   S  + 
Sbjct: 325 QKRGVEDLLKTITLVYADYVKQHKTSFVNR 354


>gi|295706430|ref|YP_003599505.1| GTP-binding protein EngA [Bacillus megaterium DSM 319]
 gi|294804089|gb|ADF41155.1| GTP-binding protein EngA [Bacillus megaterium DSM 319]
          Length = 436

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 96/252 (38%), Gaps = 35/252 (13%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I  +++    L++  +         +  + +    +    +    
Sbjct: 91  NGRDGITAADEEVAKILYKSKKPVVLAVNKVDNP------EMRELIYDFYALGYGE---- 140

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
                    S      +  L ++ + H  + K  +      K  ++G  N GKSSL NAL
Sbjct: 141 -----PFPISGTHGLGLGDLLDEAAKHFPKEKDEDYGEEVIKFSLIGRPNVGKSSLVNAL 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             +D  IV+D+ GTTRD +      E     + DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEDRVIVSDLAGTTRDAIDTKFTKEDQEYVVIDTAGMRKRGKVYESTEKYSVLRALKAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           E +D++L++  +N+++ I          +       + +  K D     T E D      
Sbjct: 256 ERSDVVLVV--LNAEEGIIEQDKKIAGYAQEAGKAVVIVVNKWD-----TVEKDEKTMKK 308

Query: 347 TGEGLEELINKI 358
             E + E    +
Sbjct: 309 FEENIREHFQFL 320



 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +       I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSGEWLNVDFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSD--- 330
           +   ++  ++  + ++ AD+I+ L      I +  E    I +      +    K D   
Sbjct: 66  EPFLEQIKQQAEIAIDEADVIIFLVNGRDGITAADEEVAKILYKSKKPVVLAVNKVDNPE 125

Query: 331 ----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNK 365
               +Y  Y   Y     IS   G GL +L+++       +
Sbjct: 126 MRELIYDFYALGYGEPFPISGTHGLGLGDLLDEAAKHFPKE 166


>gi|291557289|emb|CBL34406.1| ribosome-associated GTPase EngA [Eubacterium siraeum V10Sc8a]
          Length = 439

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG  + ++G  N GKS+LFN +  K ++IV D PG TRD +    +  G    + DT GI
Sbjct: 2   NGI-VAVVGRPNVGKSTLFNRIVGKRMSIVDDTPGVTRDRIYAKAEWLGKEFMLVDTGGI 60

Query: 278 R-ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
             ++ D++  +   +  L ++ AD+I+ + ++ S           +        +    K
Sbjct: 61  EPDSKDVILSQMRMQAQLAIDKADVIIFVTDVTSGVTANDADVAAMLQKSGKPVVLCVNK 120

Query: 329 SDLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D       E+             +SS  G G  +L++ +   +  +  +  +S
Sbjct: 121 CDGIGEVPPEFYEFYNLGLGDPIAVSSVHGHGTGDLLDAVFENMPEENPQREYS 174



 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 29/181 (16%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +    E   +  K+ ++G  NAGKSSL N +A +   IV++I GTTRD +   ++ +G 
Sbjct: 166 EENPQREYSEDAIKVAVIGKPNAGKSSLVNKIAGEQRMIVSNIAGTTRDAVDTVIERDGQ 225

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISF 316
              + DTAGIR    +    EK  + R ++ ++ AD+ +++ +               + 
Sbjct: 226 EYVLIDTAGIRRKSKVNEQIEKYSVLRAYMAIDRADVCVIMIDATEGFTEQDSKVAGYAH 285

Query: 317 PKNIDFIFIGTKSDLYS---------TYTEEYDH---------LISSFTGEGLEELINKI 358
            +    +    K D            T   E D           IS+ TG+ +++L  +I
Sbjct: 286 EQGKASVIAINKWDAVEKDGKTMQEFTKKLEVDFSFMSYAPFVFISALTGQRVDKLFEQI 345

Query: 359 K 359
           K
Sbjct: 346 K 346


>gi|218262398|ref|ZP_03476878.1| hypothetical protein PRABACTJOHN_02553 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223401|gb|EEC96051.1| hypothetical protein PRABACTJOHN_02553 [Parabacteroides johnsonii
           DSM 18315]
          Length = 437

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 95/256 (37%), Gaps = 31/256 (12%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
           +      +   +S         S    +    L + I + +   K   +     +I I+G
Sbjct: 123 NFELHPSSAEFYSFGLGDPFCVSAINGSCTGDLLDKIVATLPDDKPEVLEEELPRIAIIG 182

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-- 284
             NAGKSSL NA   +D  IVTDI GTTRD +    +  G    + DTAGIR+   +   
Sbjct: 183 RPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKKGKVNED 242

Query: 285 -EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTY 335
            E   + R+   +EN+D+ +L+ +     E        +        +    K DL    
Sbjct: 243 LEYYSVIRSIRAIENSDVCVLMLDATRGIESQDLNIFSLVQKNKKGLVVCVNKWDLVEDK 302

Query: 336 TEEYDHLISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEM- 392
           +++            ++  +N I+  L     F  L  S  + +R L  L       E  
Sbjct: 303 SQKV-----------IDTFMNAIRERLAPFTDFPILFISALTKQRILKVLETAKDVYENR 351

Query: 393 ------ASLNEKDCGL 402
                 A LNE    +
Sbjct: 352 QRRVPTAKLNETMLPI 367



 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 18/165 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L +   AIV +  GTTRD     ++       + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTQTRQAIVNEEAGTTRDRQYGKVEWTSKEFSLIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
             +DD+ E+E  K+  + +E AD+IL + ++        N    I        I +  K+
Sbjct: 62  INSDDVFEEEINKQVKIALEEADVILFVVDVLNGVTDLDNEVAAILRRAKKPVIVVANKA 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNK 365
           D   L+ +  E Y         +S+  G    +L++KI + L + 
Sbjct: 122 DNFELHPSSAEFYSFGLGDPFCVSAINGSCTGDLLDKIVATLPDD 166


>gi|331269697|ref|YP_004396189.1| small GTP-binding protein [Clostridium botulinum BKT015925]
 gi|329126247|gb|AEB76192.1| small GTP-binding protein [Clostridium botulinum BKT015925]
          Length = 438

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 94/255 (36%), Gaps = 38/255 (14%)

Query: 118 FENGKIDLLEAESLA----DLISSETEMQRRLSM------------EGMSGELSSLYGQW 161
           + N K  +++   +     D+I ++   Q ++++            +    +      Q 
Sbjct: 48  WLNNKFTIIDTGGIEPESEDVIVAQMRRQAQMAIEMADVVLFIVDGKQGLADADREVAQM 107

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF-----------LKNDISSHISQG 210
           + K           +D  + +D         L D +            L +++       
Sbjct: 108 LRKANKSIVLAVNKIDRHQLDDNIYEFYNLGLGDPMAISSSQGLGLGDLLDEVVDKFPSV 167

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              +      +I ++G  N GKSSL N +  ++  IV++IPGTTRD +   ++ E     
Sbjct: 168 NEDDEENEYIRIAMVGRPNVGKSSLINRILGEEKHIVSNIPGTTRDSVDSYIEREEGKFA 227

Query: 271 ISDTAGIRETDDIVEK---EGIKRTFLEVENADLILLLKEINSKKEISFPK--------N 319
           + DTAG+R    I E+       RT   +ENAD+ +L+ +          K        N
Sbjct: 228 LIDTAGLRRKSKIKEQVERYSAVRTIASIENADVCILMLDAEQGIAEQDEKIIGYAHELN 287

Query: 320 IDFIFIGTKSDLYST 334
              + I  K DL   
Sbjct: 288 KAIMVIVNKWDLIEK 302



 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D+PG TRD +    +       I DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAQAEWLNNKFTIIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           +D++  +  ++  + +E AD++L + +      ++ +E++      N   +    K D +
Sbjct: 66  EDVIVAQMRRQAQMAIEMADVVLFIVDGKQGLADADREVAQMLRKANKSIVLAVNKIDRH 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 Y+            SS  G GL +L++++     +  +    +
Sbjct: 126 QLDDNIYEFYNLGLGDPMAISSSQGLGLGDLLDEVVDKFPSVNEDDEEN 174


>gi|323141760|ref|ZP_08076630.1| ribosome biogenesis GTPase Der [Phascolarctobacterium sp. YIT
           12067]
 gi|322413749|gb|EFY04598.1| ribosome biogenesis GTPase Der [Phascolarctobacterium sp. YIT
           12067]
          Length = 442

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 11/128 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  K+ ++G  N GKSS+FNAL  ++ +IV+DI GTTRD +   +   G      DTAG+
Sbjct: 177 DEIKVALIGRPNVGKSSIFNALVGEERSIVSDIAGTTRDAIDTPVVRNGQKYLFIDTAGM 236

Query: 278 RET---DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEI---SFPKNIDFIFIG 326
           R     D+ +EK  + R+   V+ +D++L++ +         K I   +       I + 
Sbjct: 237 RRKAKVDEPIEKYSVMRSLRAVDRSDVVLMVFDAVEGVTEQDKRIVGYAHEAGKAVILVV 296

Query: 327 TKSDLYST 334
            K DLY  
Sbjct: 297 NKWDLYEK 304



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN  A   ++IV D PG TRD L    +   +   + DT GI    
Sbjct: 6   VAIVGRPNVGKSTLFNIFANSRISIVEDTPGVTRDRLYATAEWLDHEFMMVDTGGIEIMN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D +     ++  + ++ AD+IL + +  +           +        +    K+D  
Sbjct: 66  ADAIAVSIRQQAQIAIKEADVILFVCDARAGITTEDADVARLLRQSKKPIVLAVNKADSP 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
                 ++            S+    GL +L++ + +   
Sbjct: 126 KQEMNTFEFYNLGIGDPIAVSASNHLGLGDLLDAVVAKFP 165


>gi|262037969|ref|ZP_06011387.1| ribosome-associated GTPase EngA [Leptotrichia goodfellowii F0264]
 gi|261748010|gb|EEY35431.1| ribosome-associated GTPase EngA [Leptotrichia goodfellowii F0264]
          Length = 439

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 13/162 (8%)

Query: 194 NDILFLKNDISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
              + L + + + I++   K  +    G  I ILG  NAGKSSL N L  ++ +IV+DI 
Sbjct: 148 EHKINLGDLLDAVIAKFDNKKEKQTEEGLCIAILGRPNAGKSSLINKLLNEERSIVSDIA 207

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI 308
           GTTRD +   L  +G +  + DTAGIR     +D +E   + R    ++  D+ +L+ + 
Sbjct: 208 GTTRDAIDSTLKYDGEIYTLIDTAGIRRKSKIEDSIEYYSVLRAVKSIKRVDVCVLMLDA 267

Query: 309 NSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
                        + + +    I    K DL         H 
Sbjct: 268 TELLTDQDKRVAGLIYEEKKPIIIAVNKWDLIEKDNNSVKHF 309



 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    ++IV D PG TRD L  + +  G    + DT G+  +T
Sbjct: 5   VAIVGRPNVGKSTLFNKLVGDRLSIVKDEPGVTRDRLYRETEWSGKNFILVDTGGLEPKT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           DD + ++  ++  + ++ AD+++ L +  +
Sbjct: 65  DDFMMRKIKEQAQVAIDEADVVIFLVDGKA 94


>gi|330969066|gb|EGH69132.1| GTP-binding protein Der [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 490

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   I    EK  + +T   +++A++++ + +               +       +  
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D  +    ++                 H IS+  G G+  L   +++   +   + 
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLFFVDFADIHFISAMHGTGVGNLYQSVQNSFKSAVTRW 372

Query: 370 PFS 372
           P S
Sbjct: 373 PTS 375



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ L +E AD++L L +  +          E    +N     +  K D
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKID 121


>gi|253578391|ref|ZP_04855663.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850709|gb|EES78667.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 441

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ++++ H  +    E      +I I+G  N GKSSL N L  +D  IV+DI GTTRD 
Sbjct: 156 DMLDEVAKHFPEDADTEEDDEIPRIAIVGKPNVGKSSLVNKLLGEDRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +  +G      DTAG+R      + +E+  + RT   VE AD+++++ + +     
Sbjct: 216 VDTRVKWQGKDYIFIDTAGLRRKGKVKEEIERYSVIRTVTAVERADVVIVMIDASEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------------------ISSFTG 348
                  I+  +    I    K D      +                       IS+ TG
Sbjct: 276 QDAKIAGIAHERGKGVIIAVNKWDAIEKNDKTIYKHTNRIREVLAYMPYAELVFISAKTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
             +  +   I +++ N+  ++   + +
Sbjct: 336 LRISRMFETIDAVIENQTLRIQTGVLN 362



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 73/174 (41%), Gaps = 19/174 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVTWLDKTFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + ++ AD+I+ + +++           ++        + +  K D  
Sbjct: 66  SDIILSQMREQAQIAIDTADVIIFITDVHQGLVDSDAKVADMLRRSGKPVVLVVNKVDSI 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             +  +              IS+    GL ++++++                  
Sbjct: 126 QKFMMDVYEFYNLGIGEPIPISAANRMGLGDMLDEVAKHFPEDADTEEDDEIPR 179


>gi|291288774|ref|YP_003505590.1| ribosome-associated GTPase EngA [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885934|gb|ADD69634.1| ribosome-associated GTPase EngA [Denitrovibrio acetiphilus DSM
           12809]
          Length = 450

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 17/168 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN LA K +AIV D+PG TRD +    + EG   +I DTAG   
Sbjct: 2   FTVGIIGRPNVGKSTLFNRLAGKRLAIVDDMPGVTRDRIEFTTEWEGEKFRIVDTAGFDL 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDL 331
            +++V+KE  ++ +  ++ AD  +L+ +             ++   KN  F  +  K D 
Sbjct: 62  KEELVKKEMQQQFYSALDEADYFILMADGTEGVHPLDEIVIDLLRHKNKPFQLVVNKVDS 121

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLP 370
            S     YD            S+  G  ++ L+++I   +        
Sbjct: 122 DSKEDFIYDFYRMGVEHIIAISASHGRNVDMLLDEIIKFIPEGHDTTD 169



 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 95/243 (39%), Gaps = 42/243 (17%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILF-----------LKNDISSHISQGKLGEIIRNG 219
            +   +D   +ED      +  +  I+            L ++I   I +G        G
Sbjct: 114 LVVNKVDSDSKEDFIYDFYRMGVEHIIAISASHGRNVDMLLDEIIKFIPEGHDTTDPYEG 173

Query: 220 -YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             KIV+ G  N GKSS+ N    ++  IVT IPGTTRD +    +L+G    + DTAGIR
Sbjct: 174 RIKIVVTGRPNVGKSSMINKWLGEERLIVTPIPGTTRDAVDTFFELDGDKYVLIDTAGIR 233

Query: 279 ET----DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIG 326
           +      D +EK G  R    VE AD+ + L +     +++++     ++      I + 
Sbjct: 234 KKKSMFKDKIEKYGYYRWKDAVERADISVCLIDAEEGITERDVKVIADTWEAGRPVILVV 293

Query: 327 TKSDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNKFKK 368
            K DL     +                        S+ TG+ + ++    K +     K+
Sbjct: 294 NKWDLIEDKDDAAKAFLKDVDYKLQFLNNPSMIFTSTITGKNIYKIFKAAKDLYIEASKR 353

Query: 369 LPF 371
           +  
Sbjct: 354 IGT 356


>gi|294501083|ref|YP_003564783.1| GTP-binding protein EngA [Bacillus megaterium QM B1551]
 gi|294351020|gb|ADE71349.1| GTP-binding protein EngA [Bacillus megaterium QM B1551]
          Length = 436

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 97/252 (38%), Gaps = 35/252 (13%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I  +++    L++  +         +  + +    +    +    
Sbjct: 91  NGRDGITAADEEVAKILYKSKKPVVLAVNKVDNP------EMRELIYDFYALGYGE---- 140

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
                    S      +  L ++ + H  + K  +   +  K  ++G  N GKSSL NAL
Sbjct: 141 -----PFPISGTHGLGLGDLLDEAAKHFPKEKDEDYGEDVIKFSLIGRPNVGKSSLVNAL 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             +D  IV+D+ GTTRD +      E     + DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEDRVIVSDLAGTTRDAIDTKFTKEDQEYVVIDTAGMRKRGKVYESTEKYSVLRALKAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           E +D++L++  +N+++ I          +       + +  K D     T E D      
Sbjct: 256 ERSDVVLVV--LNAEEGIIEQDKKIAGYAQEAGKAVVIVVNKWD-----TVEKDEKTMKK 308

Query: 347 TGEGLEELINKI 358
             E + E    +
Sbjct: 309 FEENIREHFQFL 320



 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +       I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSGEWLNVDFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSD--- 330
           +   ++  ++  + ++ AD+I+ L      I +  E    I +      +    K D   
Sbjct: 66  EPFLEQIKQQAEIAIDEADVIIFLVNGRDGITAADEEVAKILYKSKKPVVLAVNKVDNPE 125

Query: 331 ----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNK 365
               +Y  Y   Y     IS   G GL +L+++       +
Sbjct: 126 MRELIYDFYALGYGEPFPISGTHGLGLGDLLDEAAKHFPKE 166


>gi|313623121|gb|EFR93388.1| ribosome-associated GTPase EngA [Listeria innocua FSL J1-023]
          Length = 436

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 30/240 (12%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  + +A+     I   +     L++  +         +  D++     +    L F 
Sbjct: 91  NGREGVTDADEQVAKILYRSNKPIVLAINKVDNP------EMRDQI-----YDFYSLGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   S    L D+L   + + +H  + +  E      K  ++G  N GKSS+ NAL
Sbjct: 140 EPYPISG-SHGLGLGDML---DAVRAHFPKEEEEEYPDETVKFSLIGRPNVGKSSILNAL 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             +D  IV+DI GTTRD +      +G    + DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           E +D++L++  IN+++ I          +       I +  K D  +   +  +      
Sbjct: 256 ERSDVVLVV--INAEEGIREQDKRIAGYAHDAGRAIIIVVNKWDAINKDEKTINVWTEDI 313



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +   ++   +  + ++ AD+I+        + + + +  +I +  N   +    K D   
Sbjct: 66  EPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
              + YD           IS   G GL ++++ +++   
Sbjct: 126 MRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAVRAHFP 164


>gi|260588686|ref|ZP_05854599.1| ribosome-associated GTPase EngA [Blautia hansenii DSM 20583]
 gi|260541161|gb|EEX21730.1| ribosome-associated GTPase EngA [Blautia hansenii DSM 20583]
          Length = 441

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 80/207 (38%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +   +  H       +      KI ++G  N GKSSL N +  +D  IV++I GTTRD 
Sbjct: 156 DMLEKVVEHFDDDAQNDEEDEIPKIAVVGKPNVGKSSLINKILGEDRVIVSNIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +  +G      DTAG+R  + I    E+  I RT   VE AD+++++ +       
Sbjct: 216 IDTKVTYQGKEYTFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVVMMIDATEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEY------------------DHLISSFTG 348
                  I+  +    +    K D      +                       IS+ TG
Sbjct: 276 QDAKIAGIAHDRGKGVVIAVNKWDAIEKNDKTIYKFTNKVRETLSYMPYAEIMFISAHTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + +  L   I  +L N+  ++   + +
Sbjct: 336 QRIPNLFETIDMVLENQTLRIQTGVLN 362



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 76/170 (44%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  ++        + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYAEVTWLDKTFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +D++  +  ++  + ++ AD+I+ + ++            ++        + +  K D +
Sbjct: 66  NDVILSQMREQAQIAIDTADVIIFMTDVRQGLVDADSKVADMLRRSKKPVVLVVNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +  +              IS+ +  GL +++ K+     +  +     
Sbjct: 126 QKFMMDTYEFYNLGIGEPVPISAASMLGLGDMLEKVVEHFDDDAQNDEED 175


>gi|71735846|ref|YP_273582.1| GTP-binding protein EngA [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257487194|ref|ZP_05641235.1| GTP-binding protein EngA [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|123637657|sp|Q48LZ0|DER_PSE14 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|71556399|gb|AAZ35610.1| GTP-binding protein engA [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320322917|gb|EFW79007.1| GTP-binding protein EngA [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329960|gb|EFW85948.1| GTP-binding protein EngA [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330985018|gb|EGH83121.1| GTP-binding protein Der [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331009189|gb|EGH89245.1| GTP-binding protein Der [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 490

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   I    EK  + +T   +++A++++ + +               +       +  
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D  +    ++                 H IS+  G G+  L   +++   +   + 
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLFFVDFADIHFISAMHGTGVGNLYQSVQNSFKSAVTRW 372

Query: 370 PFS 372
           P S
Sbjct: 373 PTS 375



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ L +E AD++L L +  +          E    +N     +  K D
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKID 121


>gi|307822499|ref|ZP_07652730.1| ribosome-associated GTPase EngA [Methylobacter tundripaludum SV96]
 gi|307736103|gb|EFO06949.1| ribosome-associated GTPase EngA [Methylobacter tundripaludum SV96]
          Length = 465

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 80/207 (38%), Gaps = 28/207 (13%)

Query: 198 FLKNDISSHISQGKLG-EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L   ++  +   K   E   +G  I ++G  N GKS+L N L  ++  IV D PGTTRD
Sbjct: 153 ELLEKVNQLLPPDKGEVEEAHSGIGIAVVGRPNVGKSTLVNRLLGEERVIVFDEPGTTRD 212

Query: 257 VLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            + I  +  G    + DTAG+R      + +EK  + ++   +E A++++ L +      
Sbjct: 213 SIYIPFERNGKKFTLIDTAGMRRRSKIAETIEKFSVIKSLQAIEKANVVIYLIDAREGIT 272

Query: 312 ------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI----------------SSFTGE 349
                   +        I    K D  S   +   H                  S+  G 
Sbjct: 273 DQDAHLLGLVLEAGRALIIGLNKWDGISADQKATIHRQLDVKLSFLEFAEKHPISALHGS 332

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSH 376
           G+ ++ + ++ + +     +   + + 
Sbjct: 333 GVGKMFDVVQQLYAAAMLDMSTPVLTR 359



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D  G TRD     + L      + DT GI +  
Sbjct: 5   IALVGRPNVGKSTLFNYLTRSRDALVADFSGLTRDRQYGRVKLGDRPCLVVDTGGIADDA 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + +E    K+  + +E AD++  + +             +         I +  K D   
Sbjct: 65  EGIESFARKQVQVALEEADIVFFMVDAREGLSASDKVIADTLRKLQKPVILVTNKVDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             T   D           I++  G+G+ EL+ K+  +L     ++  +
Sbjct: 125 ASTAASDFYSLALGEPVKIAASHGKGIPELLEKVNQLLPPDKGEVEEA 172


>gi|124023844|ref|YP_001018151.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9303]
 gi|123964130|gb|ABM78886.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str.
           MIT 9303]
          Length = 461

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + S +             ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD 
Sbjct: 162 DLLDRVLSLLPPKHEEAEEDEPIQMAIIGRPNVGKSSLLNAICGEPRAIVSPIRGTTRDT 221

Query: 258 LTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +   L+ EG+  ++ DTAGI   R  +   E  GI R+F  +E +D+ +L+ +       
Sbjct: 222 IDTRLEREGHPWRLIDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTE 281

Query: 309 -NSKKEISFPKNIDFI-FIGTKSDLYST 334
            + +       +      +  K D    
Sbjct: 282 QDQRLAGRIEDDGRACVLVVNKWDAVEK 309



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 19/175 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 12  VAIIGRPNVGKSTLVNRLCRSREAIVDDKPGVTRDRTYQDGFWGDREFKVVDTGGLVFDD 71

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           D     E  ++  L +  A + L++ +          S  E    +    +    K +  
Sbjct: 72  DSEFLPEIREQANLALAEASVALVIVDGQQGVTAADESIAEWLRMQPCPTLVAVNKCESP 131

Query: 333 ST----------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                               IS+  G G  +L++++ S+L  K ++     P   
Sbjct: 132 DQGLAMAAEFWRLGLGEPFPISAIHGAGTGDLLDRVLSLLPPKHEEAEEDEPIQM 186


>gi|121634628|ref|YP_974873.1| GTP-binding protein EngA [Neisseria meningitidis FAM18]
 gi|166225830|sp|A1KT93|DER_NEIMF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|120866334|emb|CAM10076.1| putative GTP-binding protein [Neisseria meningitidis FAM18]
 gi|261392799|emb|CAX50375.1| putative GTP-binding protein EngA [Neisseria meningitidis 8013]
 gi|325142105|gb|EGC64531.1| GTP-binding protein [Neisseria meningitidis 961-5945]
 gi|325198052|gb|ADY93508.1| GTP-binding protein [Neisseria meningitidis G2136]
 gi|325203920|gb|ADY99373.1| GTP-binding protein [Neisseria meningitidis M01-240355]
          Length = 485

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  DI     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 155 LIEDILETFPEPEAEEADAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 335 DGLFDSIQAAYNAAMIKMPTPKITR 359



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 60/166 (36%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                +  +        ++IS   G+G+  LI  I         + 
Sbjct: 125 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETFPEPEAEE 170


>gi|66044500|ref|YP_234341.1| GTP-binding protein EngA [Pseudomonas syringae pv. syringae B728a]
 gi|81308464|sp|Q4ZX19|DER_PSEU2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|63255207|gb|AAY36303.1| Small GTP-binding protein domain:GTP-binding [Pseudomonas syringae
           pv. syringae B728a]
          Length = 490

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   I    EK  + +T   +++A++++ + +               +       +  
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D  +    ++                 H IS+  G G+  L   +++   +   + 
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLFFVDFADIHFISAMHGTGVGNLYQSVQNSFKSAVTRW 372

Query: 370 PFS 372
           P S
Sbjct: 373 PTS 375



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ L +E AD++L L +  +          E    +N     +  K D
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKID 121


>gi|160892719|ref|ZP_02073509.1| hypothetical protein CLOL250_00249 [Clostridium sp. L2-50]
 gi|156865760|gb|EDO59191.1| hypothetical protein CLOL250_00249 [Clostridium sp. L2-50]
          Length = 440

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 88/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++ SH  +    E   +  +I I+G  N GKSS+ N L  ++  IV+DI GTTRD 
Sbjct: 156 DMLDEVVSHFDEDSKNEEEDDRPRIAIIGKPNVGKSSIINKLLGENRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++   G      DTAG+R    I   +E+  I RT   VE  ++ +L+ +       
Sbjct: 216 IDTEIVRNGTEYVFIDTAGLRRKSKIKEDIERYSIIRTVSAVERCNVAVLVIDATEGVTD 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYS-------TYTEEYDH-----------LISSFTG 348
                  I+  +    I +  K D           +T+E               +S+ TG
Sbjct: 276 QDAKIAGIAHERGKGMIIVVNKWDAVEKDDKTIYKFTKEIREKLSYMPYAELLFVSAATG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L   I +++ N   ++   + +
Sbjct: 336 QRLPKLFETIDAVIENHSLRVATGVLN 362



 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+    Y   I DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVSWLDYNFTIIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY 332
           D+I+ K   ++  + +E AD+I+ + ++            ++        I +  K D +
Sbjct: 66  DNIILKSMREQAEIAIETADVIIFMTDVRQGLVDDDHKVVQMLRKSKKPVILVVNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             Y  +              IS  +  G+ ++++++ S      K     
Sbjct: 126 EKYMNDVYEFYNLGLGDPVPISGASRLGIGDMLDEVVSHFDEDSKNEEED 175


>gi|254804723|ref|YP_003082944.1| putative GTP-binding protein [Neisseria meningitidis alpha14]
 gi|254668265|emb|CBA05137.1| putative GTP-binding protein [Neisseria meningitidis alpha14]
 gi|254673335|emb|CBA08527.1| putative GTP-binding protein [Neisseria meningitidis alpha275]
 gi|325132265|gb|EGC54958.1| GTP-binding protein [Neisseria meningitidis M6190]
 gi|325137764|gb|EGC60339.1| GTP-binding protein [Neisseria meningitidis ES14902]
          Length = 485

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  +I  +  + ++ E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 155 LIEEILENFPEPEVEEADAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 335 DGLFDSIQAAYNAAMIKMPTPKITR 359



 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                +  +        ++IS   G+G+  LI +I  
Sbjct: 125 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEEILE 161


>gi|330975909|gb|EGH75975.1| GTP-binding protein Der [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 490

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   I    EK  + +T   +++A++++ + +               +       +  
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D  +    ++                 H IS+  G G+  L   +++   +   + 
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLFFVDFADIHFISALHGTGVGNLYQSVQNSFKSAVTRW 372

Query: 370 PFS 372
           P S
Sbjct: 373 PTS 375



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ L +E AD++L L +  +          E    +N     +  K D
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKID 121


>gi|269118862|ref|YP_003307039.1| small GTP-binding protein [Sebaldella termitidis ATCC 33386]
 gi|268612740|gb|ACZ07108.1| small GTP-binding protein [Sebaldella termitidis ATCC 33386]
          Length = 440

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 86/214 (40%), Gaps = 31/214 (14%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
              + L + + + I + +    ++      I +LG  NAGKSSL N +  K+ +IV+DI 
Sbjct: 148 EHKVNLGDLLDAIIGKFEKMNTVQEEEVLSIAVLGRPNAGKSSLVNKILNKERSIVSDIA 207

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI 308
           GTTRD +  D   +    +I DTAGIR     DD +E   + R    +  AD+ +L+ + 
Sbjct: 208 GTTRDSIDSDFRYKNRKYRIIDTAGIRRKSKIDDSIEYYSVLRAIKAINRADVCVLMLDS 267

Query: 309 NSK--------KEISFPKNIDFIFIGTKSDLYST------------------YTEEYDHL 342
                        +   +    I    K DL                      +      
Sbjct: 268 TELVTEQDKRVAGLIHDEKKPLIIAINKWDLIEKDNSTVKQFTELVKTELPFLSYAPVIT 327

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           +S+ TG+ +  ++++I  +     KK+   + + 
Sbjct: 328 MSALTGQRVMPILDQINDVFEEYNKKISTGVLNQ 361



 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L  + ++IV D+PG TRD L  D++  G    + DT G+  +T
Sbjct: 5   VAIVGRPNVGKSTLFNKLIGERLSIVKDVPGVTRDRLYRDVEWSGKEFTLVDTGGLEPKT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
            D +  +   +  + ++ AD+++ L +              +   K+   I    K D  
Sbjct: 65  QDFIMSKIKDQAQVAIDEADVVVFLVDGKYGITGLDEEVAAVLRKKDKKVIVAVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             Y +  D +   F G G EE+I
Sbjct: 123 -NYIKNQDRIYEFF-GLGFEEVI 143


>gi|154249913|ref|YP_001410738.1| GTP-binding protein EngA [Fervidobacterium nodosum Rt17-B1]
 gi|154153849|gb|ABS61081.1| small GTP-binding protein [Fervidobacterium nodosum Rt17-B1]
          Length = 444

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 29/238 (12%)

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           L   E   V    S+ +   I  + N ++S   +    E   N  ++ ++G  NAGKSSL
Sbjct: 146 LGLGEPFPVSAEQSRNLDELIETIINKLTSKGLELTASEYDENIIRVTLVGKPNAGKSSL 205

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRT 292
           FN + K++ A+VT I GTTRD++   + +        DTAG+R+    +D +E+    RT
Sbjct: 206 FNMIVKEERALVTPIAGTTRDIIDEIVQINNKNYLFVDTAGLRKKSRIEDFIERVSTMRT 265

Query: 293 FLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-- 342
              +E +D+++L+ +              ++       + +  K DL     +       
Sbjct: 266 IDSIERSDVVVLVIDATEGITRQDQRIAGLAEKNGKATVIVFNKWDLVKHADKRVKEYLD 325

Query: 343 ----------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                            S+ +  G +ELIN I     +  K++P S  +       + 
Sbjct: 326 QVNEKLYFIDYSPVVFTSTVSKVGYKELINAINKSYESLHKRVPTSAINSAIQRMIIK 383



 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           ++++G SN GKS+LFN L  K  +IV D  GTTRD +   +       ++ DT GI E  
Sbjct: 14  VILVGKSNVGKSTLFNKLVGKRKSIVADENGTTRDAVVDRVVWYDKTFQLVDTCGIFEGK 73

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLY 332
           +D + ++  + T   +  ADL++ + +          +  ++      + I    K +  
Sbjct: 74  NDEIYEKSKEITIKSLSEADLVIFVVDGRKGLSSEDYTIADLIRKSGAEVILAANKVENE 133

Query: 333 STYTEEYDHLISSFTGE----------GLEELINKIKSILSNKFKKLPFS 372
             Y +      S   GE           L+ELI  I + L++K  +L  S
Sbjct: 134 KIYQKNLPDFFSLGLGEPFPVSAEQSRNLDELIETIINKLTSKGLELTAS 183


>gi|302039510|ref|YP_003799832.1| GTP-binding protein EngA [Candidatus Nitrospira defluvii]
 gi|300607574|emb|CBK43907.1| GTP-binding protein EngA [Candidatus Nitrospira defluvii]
          Length = 464

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 97/249 (38%), Gaps = 32/249 (12%)

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLS---------MEGMSGELSSLYGQWIDKLT 166
           R  + G +D   +E +  LI  ++++    +           G++     +         
Sbjct: 79  RLVDTGGLDPTASEGMLSLIRQQSQLAIAEADILVLVLDARSGLTPADEEVVQTLRGS-D 137

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLND-----------ILFLKNDISSHISQGKLGEI 215
               ++   +D  + + +     +                +  L +D+ SH+++    E 
Sbjct: 138 KPVYYVINKIDTPKADPLVADFYRLGQEQLYPLSAEHGIGVAELLDDLFSHMAEPLDEEA 197

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
             +  +I I+G  N GKS+L N++  +   +V+++PGTTRD +      +     ++DTA
Sbjct: 198 TSDTPRIAIVGRPNVGKSTLVNSVLGEARVVVSNVPGTTRDPVDSVATFKDRQYVLTDTA 257

Query: 276 GIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIF 324
           GIR    +   +E   + R+   +  +D+ +LL +              +   +    I 
Sbjct: 258 GIRRRGRVERGIEGYSVARSLRAIGRSDIAVLLLDAEEGVTEQDTKIAGLVLKQGRACIL 317

Query: 325 IGTKSDLYS 333
           I  K DL +
Sbjct: 318 IVNKWDLKT 326



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           I ++G  N GKS+LFN +     AIV D+PG TRD    D        ++ DT G+  T 
Sbjct: 31  IALIGRPNVGKSTLFNRILGTRAAIVDDVPGVTRDRNYADSTYRNRRFRLVDTGGLDPTA 90

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLY 332
            + +     +++ L +  AD+++L+ +  S    +  +        +    ++  K D  
Sbjct: 91  SEGMLSLIRQQSQLAIAEADILVLVLDARSGLTPADEEVVQTLRGSDKPVYYVINKIDTP 150

Query: 333 ST---------YTEEYDHLISSFTGEGLEELINKI 358
                        +E  + +S+  G G+ EL++ +
Sbjct: 151 KADPLVADFYRLGQEQLYPLSAEHGIGVAELLDDL 185


>gi|134299023|ref|YP_001112519.1| GTP-binding protein EngA [Desulfotomaculum reducens MI-1]
 gi|172044273|sp|A4J3P1|DER_DESRM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|134051723|gb|ABO49694.1| small GTP-binding protein [Desulfotomaculum reducens MI-1]
          Length = 439

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 15/168 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  ++          +  +I ++G  N GKSSL N +  ++  IV++IPGTTRD 
Sbjct: 153 DLLDELVKNLPAQDEDPYPPDTIRIAVIGRPNVGKSSLVNTILGEERVIVSNIPGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +    +  G    + DTAG+R   + D   E+  + R    V+  D+ L++ +       
Sbjct: 213 IDSSFEKNGKNYVLVDTAGMRRRKKIDLPTERYSVVRALRAVDRCDVALMVFDATEGIAE 272

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
                   +  K    I I  K DL     E+ D  ++ F  +  EEL
Sbjct: 273 QDKRIVGYAHEKGKAIILIINKWDLI----EKDDKTMNRFEKKIREEL 316



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 16/163 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +    +AIV D+PG TRD L  D + +G    + DT G+   +
Sbjct: 6   VAIVGRPNVGKSTLFNRIVGARIAIVEDMPGVTRDRLYQDAEWQGREFTLVDTGGLDFAE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           DI+  +  K+  L +  AD+IL + +          +        +   I +  K + + 
Sbjct: 66  DIITAQIRKQAELAIYEADIILFVVDAREGLTAIDEEVGRTLRRADKPVILVANKVEHFD 125

Query: 334 TYT--------EEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
                            +S+  G    +L++++   L  + + 
Sbjct: 126 KIPYYDFYQLGLGDPVPVSAAEGLNTGDLLDELVKNLPAQDED 168


>gi|291563224|emb|CBL42040.1| ribosome-associated GTPase EngA [butyrate-producing bacterium
           SS3/4]
          Length = 441

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 96/234 (41%), Gaps = 35/234 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  +  + +  +   +  +I I+G  N GKSS+ N L  ++  IV++I GTTRD 
Sbjct: 156 ELLDEVVKYFREDQYDDSEDDRPRIAIVGKPNVGKSSIINKLLGENRVIVSNIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEI------ 308
           +  ++   G      DTAG+R    I   +E+  I RT   VE AD++L++ +       
Sbjct: 216 VDTEIVRNGTEYIFIDTAGLRRKSKIKEDIERYSIIRTVTAVERADVVLMVIDAVEGITE 275

Query: 309 -NSK-KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            ++K   I+  +    I +  K D                  + + E   K+K  LS   
Sbjct: 276 QDAKIAGIAHDRGKGVIVVVNKWDAIEK------------NDKTIYEYTRKLKETLSYMP 323

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
                 + +       + +    ++M   N+           LR+A+  L +I 
Sbjct: 324 YAEYIFVSALTGQR--MEKLFELIDMVRENQT----------LRVATGVLNEIV 365



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 19/163 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA   ++IV D PG TRD +  D         + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGSTISIVKDTPGVTRDRIYADCTWLNNNFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + ++ AD+I+ + ++            ++        +    K D  
Sbjct: 66  KDIILAQMREQAQIAIDTADVIIFIVDVRQGLVDADSKVADMLRKSKKPVVLAVNKVDSM 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNK 365
           + +  +              +S+ +  GL EL++++       
Sbjct: 126 AKFGNDVYEFYNLGIGDPVPVSAASRLGLGELLDEVVKYFRED 168


>gi|209527936|ref|ZP_03276422.1| small GTP-binding protein [Arthrospira maxima CS-328]
 gi|209491626|gb|EDZ91995.1| small GTP-binding protein [Arthrospira maxima CS-328]
          Length = 453

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 12/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  ++      E      ++ I+G  N GKSSL N    ++ AIV+ I GTTRD 
Sbjct: 156 ELLDALIENLPASTDNE-DSEELRVAIVGRPNVGKSSLLNTFLGQERAIVSPISGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI-----N 309
           +   ++  G   ++ DTAGIR     +   E  GI R F  +  AD++L + +      +
Sbjct: 215 IDTIVEHNGNTYRLVDTAGIRRKKHVEYGAEFFGINRAFKAIRRADVVLFVIDAVEGVTD 274

Query: 310 SKKEIS---FPKNIDFIFIGTKSDLYST 334
             ++++          + +  K D    
Sbjct: 275 QDQKLAGRISDDGRACVIVVNKWDAVEK 302



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD        +     + DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLTQTQDAIVHDQPGMTRDRTYRSAYWQDREFTVVDTGGLVFDD 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIG--TKSDLY 332
           D        ++  + +  A   +L+ +         +   S+ +      +    K +  
Sbjct: 66  DTEFLPLIREQALMALAEATAAILVVDGQTGPTGGDEAIASWLRQQKVPILLAVNKCESP 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPF 371
           +    +               SS  G G  EL++ +   L         
Sbjct: 126 TQGLTQAAQFWELGLGNPFPISSIHGSGTGELLDALIENLPASTDNEDS 174


>gi|297565398|ref|YP_003684370.1| ribosome-associated GTPase EngA [Meiothermus silvanus DSM 9946]
 gi|296849847|gb|ADH62862.1| ribosome-associated GTPase EngA [Meiothermus silvanus DSM 9946]
          Length = 437

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 10/167 (5%)

Query: 198 FLKNDISSHISQGKLGEIIRN--GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L++ I S +   + GE        KI I+G  NAGKSSL NA+  ++  IV++ PGTTR
Sbjct: 151 ELEDKIWSKLPVRQEGESEPEVVPIKIAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTR 210

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINS--KK 312
           D + ++ D  G L ++ DTAGIR+  +  VE+  I R    +E AD++ L+ +  +   +
Sbjct: 211 DSIDVEFDYGGTLFQLVDTAGIRKRPETLVEELAIARAHKSIEEADIVFLVIDPANFGDR 270

Query: 313 EISFPK-----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           E+             I   TK DL     +       S     L  L
Sbjct: 271 ELKLANEALEAGKPVILTVTKWDLVKKDDQPKVRREISERLAHLGHL 317



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 23/208 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           YK+VI+G  N GKSSLFN L  K  A+V D PG TRD+    ++ E    K+ DT G+  
Sbjct: 2   YKVVIVGRPNVGKSSLFNRLLGKRHAVVADQPGVTRDLKEATVESERGRFKLVDTGGL-W 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD- 330
           + D+ E++  ++    +E+ADL+L   +  +          +    K+ + + + TK D 
Sbjct: 61  SGDVWEQKIKEKVEAALEDADLVLFTVDGRADISPADLEVADFLRRKHSNVLLVATKVDD 120

Query: 331 ------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILS--NKFKKLPFSIPSHKRHL 380
                 L   +   +      SS    GL+EL +KI S L    + +  P  +P     +
Sbjct: 121 PKHENYLGDLWALGFGEPVPTSSSHARGLDELEDKIWSKLPVRQEGESEPEVVPIKIAIV 180

Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAEN 408
              +     L  A L E+     I++E 
Sbjct: 181 GRPNAGKSSLLNAILGEERV---IVSEE 205


>gi|16801117|ref|NP_471385.1| GTP-binding protein EngA [Listeria innocua Clip11262]
 gi|26006727|sp|Q92A71|DER_LISIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|16414552|emb|CAC97281.1| lin2051 [Listeria innocua Clip11262]
          Length = 436

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 30/240 (12%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  + +A+     I   +     L++  +         +  D++     +    L F 
Sbjct: 91  NGREGVTDADEQVAKILYRSNKPIVLAINKVDNP------EMRDQI-----YDFYSLGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   S    L D+L   + + +H  + +  E      K  ++G  N GKSS+ NAL
Sbjct: 140 EPYPISG-SHGLGLGDML---DAVRAHFPKEEEEEYPDETVKFSLIGRPNVGKSSILNAL 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             +D  IV+DI GTTRD +      +G    + DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           E +D++L++  IN+++ I          +       I +  K D  +   +  +      
Sbjct: 256 ERSDVVLVV--INAEEGIREQDKRIAGYAHDAGRAIIIVVNKWDAINKDEKTINVWTEDI 313



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +   ++   +  + ++ AD+I+        + + + +  +I +  N   +    K D   
Sbjct: 66  EPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
              + YD           IS   G GL ++++ +++   
Sbjct: 126 MRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAVRAHFP 164


>gi|325127951|gb|EGC50852.1| GTP-binding protein [Neisseria meningitidis N1568]
 gi|325134015|gb|EGC56670.1| GTP-binding protein [Neisseria meningitidis M13399]
 gi|325202361|gb|ADY97815.1| GTP-binding protein [Neisseria meningitidis M01-240149]
 gi|325206317|gb|ADZ01770.1| GTP-binding protein [Neisseria meningitidis M04-240196]
 gi|325207887|gb|ADZ03339.1| GTP-binding protein [Neisseria meningitidis NZ-05/33]
          Length = 485

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  +I  +  + ++ E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 155 LIEEILENFPEPEVEEADAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 335 DGLFDSIQAAYNAAMIKMPTPKITR 359



 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                +  +        ++IS   G+G+  LI +I  
Sbjct: 125 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEEILE 161


>gi|325130014|gb|EGC52808.1| GTP-binding protein [Neisseria meningitidis OX99.30304]
          Length = 485

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  +I  +  + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 155 LIEEILENFPEPEAEEADAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L   I++  +    K+P    + 
Sbjct: 335 DGLFESIQAAYNAAMIKMPTPKITR 359



 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                +  +        ++IS   G+G+  LI +I  
Sbjct: 125 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEEILE 161


>gi|227872320|ref|ZP_03990675.1| GTPase [Oribacterium sinus F0268]
 gi|227841827|gb|EEJ52102.1| GTPase [Oribacterium sinus F0268]
          Length = 440

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 15/163 (9%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H  +  L E      KI ++G  N GKSSL N L  ++  IV+DI GTTRD 
Sbjct: 156 DLLDEVVKHFPKEGLEEEEDGTLKIALIGKPNVGKSSLTNKLLGENRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEI------ 308
           +  ++   G      DTAG+R    +   +E+  + RT   V+ AD+ ++L +       
Sbjct: 216 IDTEVTYNGTPYIFIDTAGLRRKGKVTEDIERYSVIRTVAAVDRADICIVLIDAVEGITD 275

Query: 309 --NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
                  I+       I    K DL     E+ D  +  FT +
Sbjct: 276 GDTRIAGIAHESGKGVIIAVNKWDLV----EKNDKTMQEFTKQ 314



 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+LFN +A K ++IV D PG TRD +  + +   Y   + DT GI   +
Sbjct: 6   VAVVGRPNVGKSTLFNTIAGKQISIVQDTPGVTRDRIYAEGNWLNYYFTMVDTGGIEPIS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DD++ K+   +  L +E AD+I+ + ++ S          E+        +    K D  
Sbjct: 66  DDVLLKQMRSQAELAIETADVIIFVTDVKSGVVDADYEVAEMLRRSKKPIVLCVNKVDSI 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             Y  +              +S+    GL +L++++      +  +    
Sbjct: 126 KKYGNDIYEFYQLGLGEPFPVSAANHLGLGDLLDEVVKHFPKEGLEEEED 175


>gi|323466656|gb|ADX70343.1| GTP-binding protein engA [Lactobacillus helveticus H10]
          Length = 435

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 115/293 (39%), Gaps = 49/293 (16%)

Query: 131 LADLISSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIR-------SFIEADLDFSEEE 182
           + + I ++ E+    + +  M   + +      +++ H+               D  E+ 
Sbjct: 68  IEEEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIAHLLYRTKKPVILAVNKADNPEQR 127

Query: 183 DVQNFSSKEVLNDIL-----------FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           +         L D +            L ++I S     K  +   +     ++G  N G
Sbjct: 128 NDIYDFYSLGLGDPIPVSSSHGTGIGDLLDEIVSDFPAEKDSQA-NDVISFSVIGRPNVG 186

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEG 288
           KSS+ N L  +D  IV +  GTTRD +      +G   K+ DTAGIR    +    EK  
Sbjct: 187 KSSVVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGVKFKVVDTAGIRRRGKVYEKTEKYS 246

Query: 289 IKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY---STYTE 337
           + R    +E +D++LL+ + ++            +       I +  K DL    ST  +
Sbjct: 247 VLRAVAAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLPKKNSTSAK 306

Query: 338 EYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           E++                 +S+ TG+ L+++ + +K +  N+ +++  S+ +
Sbjct: 307 EFEREIRAEFQYLDYAPILFVSAKTGQRLDQIPSMVKEVYDNQNQRIQSSVLN 359



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD      +  G+   + DT GI    
Sbjct: 6   VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
             +E+E   +  + +E AD+I++       + +++ +   + +      I    K+D   
Sbjct: 66  GKIEEEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIAHLLYRTKKPVILAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G+ +L+++I S    +       + 
Sbjct: 126 QRNDIYDFYSLGLGDPIPVSSSHGTGIGDLLDEIVSDFPAEKDSQANDVI 175


>gi|313896288|ref|ZP_07829841.1| ribosome biogenesis GTPase Der [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975087|gb|EFR40549.1| ribosome biogenesis GTPase Der [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 441

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 110/279 (39%), Gaps = 37/279 (13%)

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS------MEGMSG--ELSSLYG 159
           A          + G I+  E++ +   + S+ E+    +      ++G +G        G
Sbjct: 46  AEWLNHEFTIIDTGGIEFDESDHILRSMRSQAELAMEEADVILFLVDGRAGLTASDEEVG 105

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL-----------FLKNDISSHIS 208
           + + +           +D  E E++        L D +            L + + +   
Sbjct: 106 RLLRRTNKPVILAVNKIDSFERENLIYDFYALGLGDPIPISASNAMNLGDLLDAVVAVFP 165

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           + +  E   +   I ++G  N GKSSL N L  ++  IV+D+PGTTRD +      +G  
Sbjct: 166 REEAEEREPDEIAIAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDTHFTRDGAK 225

Query: 269 VKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEIS---------- 315
             + DTAG+R    I    E+  + R+   ++ A ++L++  IN+ + I           
Sbjct: 226 YLLIDTAGMRRKGKITLPVERYSVMRSLRAIDRAGVVLMV--INAAEGILEQDTKIAGYV 283

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
                  I +  K D+   + E+ D     FT +  EEL
Sbjct: 284 HESGKGVIIVVNKWDI---FPEKNDKSTLRFTDDLREEL 319



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN + KK ++IV D+PG TRD + +D +   +   I DT GI  + 
Sbjct: 6   VAVVGRPNVGKSTLFNQIGKKRISIVDDMPGVTRDRIYMDAEWLNHEFTIIDTGGIEFDE 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLY 332
            D + +    +  L +E AD+IL L +  +    S  +        N   I    K D +
Sbjct: 66  SDHILRSMRSQAELAMEEADVILFLVDGRAGLTASDEEVGRLLRRTNKPVILAVNKIDSF 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
                 YD           IS+     L +L++ + ++ 
Sbjct: 126 ERENLIYDFYALGLGDPIPISASNAMNLGDLLDAVVAVF 164


>gi|325106044|ref|YP_004275698.1| ribosome-associated GTPase EngA [Pedobacter saltans DSM 12145]
 gi|324974892|gb|ADY53876.1| ribosome-associated GTPase EngA [Pedobacter saltans DSM 12145]
          Length = 433

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 17/167 (10%)

Query: 201 NDISSHISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             +   I      E I+N   +  I+G  N GKSS+ NAL  KD  IVT++ GTTRD + 
Sbjct: 154 ELLDDVIKTFDETEEIQNELPVYAIVGRPNVGKSSMINALLGKDRNIVTNVAGTTRDSIH 213

Query: 260 IDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--- 313
           I     G+   + DTAG+R+   +    E   + RT   +E AD+I+L+ +     E   
Sbjct: 214 IHYKQFGHDFMLVDTAGLRKKTKVRENIEFYSVMRTIGALEEADVIILMLDATEGIESQD 273

Query: 314 -----ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
                ++       + +  K DL      E DH  +    + + E I
Sbjct: 274 INIFHLAEKNRKGLVLVVNKWDLV-----EKDHKTAKAFEQKINEKI 315



 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 18/167 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+L+N L +   AIV D+ G TRD      +       + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLYNRLTETRKAIVDDMSGVTRDRHYGLAEWTDKTFTVIDTGGYV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
             ++DI E    ++  + +E A  I+ + ++        +    I             K 
Sbjct: 62  ANSEDIFEIAIREQVLIAIEEATAIIFMVDVTTGITDLDDDIAGILRRSKKPVFVTANKV 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFK 367
           D   L +   + Y       + +SS TG G  EL++ +        +
Sbjct: 122 DNNMLLAEAAQFYSFGLGEIYSLSSMTGSGTGELLDDVIKTFDETEE 168


>gi|158320432|ref|YP_001512939.1| small GTP-binding protein [Alkaliphilus oremlandii OhILAs]
 gi|166920096|sp|A8MH56|DER_ALKOO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|158140631|gb|ABW18943.1| small GTP-binding protein [Alkaliphilus oremlandii OhILAs]
          Length = 440

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 82/204 (40%), Gaps = 29/204 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  + +     +   +  K+ ++G  N GKSSL N +  ++  IV+DI GTTRD 
Sbjct: 155 DLLDEVVKNFNPEDYNQYDDDVIKVAMIGKPNVGKSSLINRILGEERVIVSDIAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +            + DTAGIR    I   +EK  I R    VE +D+ LL+ + +     
Sbjct: 215 IDTPFTDGDDRYVLIDTAGIRRKSRITESIEKYSIVRAIAAVEKSDVCLLVIDASEGVTE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   S       + +  K D+                      +      +S+ TG
Sbjct: 275 QDKKIAGYSHENGKGMVIVVNKWDIIEKDNHTMNEFIKEIRNELTYISYAPIVFVSALTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           + + +++ ++K + +    ++P  
Sbjct: 335 QRMNKILEEVKHVSNQNAMRIPTG 358



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN +A + ++IV + PG TRD +  + +   Y   + DT GI  E+
Sbjct: 6   VAVVGRPNVGKSTLFNKIAGERISIVENKPGVTRDRIYAEAEWLNYQFTLIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           ++I+  +  ++  L +E A++I+ + +             E+        I    K D  
Sbjct: 66  EEIIPAQMRRQAELAMETANVIIFVVDGREGLTSVDRDVAELLRKTKKPVIVTLNKVDTR 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINK-IKSILSNKFKKLPFSIP 374
                 Y+           IS+  G G+ +L+++ +K+     + +    + 
Sbjct: 126 HQSEHFYEFYELGMGDPIEISASLGLGIGDLLDEVVKNFNPEDYNQYDDDVI 177


>gi|229160554|ref|ZP_04288549.1| GTP-binding protein engA [Bacillus cereus R309803]
 gi|228622964|gb|EEK79795.1| GTP-binding protein engA [Bacillus cereus R309803]
          Length = 438

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++ + H  + +      +  +  ++G  N GKSSL NAL  ++  IV+++ GTTRD 
Sbjct: 156 DLLDEAAQHFPKIEEDGYDEDTIRFSLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +      +G    I DTAG+R+   +    EK  + R    +E +D++L++ +     I 
Sbjct: 216 VDTPYSKDGKDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIE 275

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST 334
             K+I   +       + +  K D    
Sbjct: 276 QDKKIAGYAHDSGRAVVIVVNKWDAVKK 303



 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    D   +   I DT GI   D
Sbjct: 8   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGDWLNHEFNIIDTGGIDIGD 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + +  E    I +  N   +    K D   
Sbjct: 68  EPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSNKPVVLAVNKVDNPE 127

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
             ++ YD           IS   G GL +L+++         +  
Sbjct: 128 MRSDIYDFYALGFGEPFPISGTHGLGLGDLLDEAAQHFPKIEEDG 172


>gi|320529134|ref|ZP_08030226.1| ribosome-associated GTPase EngA [Selenomonas artemidis F0399]
 gi|320138764|gb|EFW30654.1| ribosome-associated GTPase EngA [Selenomonas artemidis F0399]
          Length = 441

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 108/279 (38%), Gaps = 37/279 (13%)

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS------MEGMSG--ELSSLYG 159
           A          + G I+  E++ +   + S+ E+    +      ++G +G        G
Sbjct: 46  AEWLNHEFTIIDTGGIEFDESDHILRSMRSQAELAMEEADVILFLVDGRAGLTASDEEVG 105

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL-----------FLKNDISSHIS 208
           + + +           +D  E E +        L D +            L + + +   
Sbjct: 106 RLLRRTNKPVILAVNKIDSFERESLIYDFYALGLGDPIPISASNAMNLGDLLDAVVAAFR 165

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
             +  E   +   I ++G  N GKSSL N L  ++  IV+D+PGTTRD +      +G  
Sbjct: 166 AEETEEREPDEIAIAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDTHFTRDGAK 225

Query: 269 VKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEIS---------- 315
             + DTAG+R    I    E+  + R+   ++ A ++L++  IN+ + I           
Sbjct: 226 YLLIDTAGMRRKGKITLPVERYSVMRSLRAIDRAGVVLMV--INAAEGILEQDTKIAGYV 283

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
                  I +  K D+   + E+ D     FT +  EEL
Sbjct: 284 HESGKGVIIVVNKWDI---FPEKNDKSTLRFTDDLREEL 319



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN + KK V+IV D+PG TRD + +D +   +   I DT GI  + 
Sbjct: 6   VAVVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYMDAEWLNHEFTIIDTGGIEFDE 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLY 332
            D + +    +  L +E AD+IL L +  +    S  +        N   I    K D +
Sbjct: 66  SDHILRSMRSQAELAMEEADVILFLVDGRAGLTASDEEVGRLLRRTNKPVILAVNKIDSF 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
              +  YD           IS+     L +L++ + +  
Sbjct: 126 ERESLIYDFYALGLGDPIPISASNAMNLGDLLDAVVAAF 164


>gi|309389060|gb|ADO76940.1| ribosome-associated GTPase EngA [Halanaerobium praevalens DSM 2228]
          Length = 438

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 107/267 (40%), Gaps = 40/267 (14%)

Query: 149 GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV-----------QNFSSKEVLNDIL 197
           GM+G    +          +   +    DFS +E++               S E   +  
Sbjct: 96  GMTGVDEDIAQLLYRTNKEVILVVNKVEDFSNQEEIGWEFYSLGFGTPFLISAEHGKNTG 155

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +++ + +  E   +   I ++G  N GKSSL N L  K   IV+D+PGTTRD 
Sbjct: 156 QLLDQVKANLPEIETEEDDDDKINIAVIGKPNVGKSSLVNHLIGKKRVIVSDMPGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI-----N 309
           +   +  +       DTAG+R    +    E     R    V+ AD +L++ +      +
Sbjct: 216 VDTMIKWKDISFNFIDTAGLRRKSRVKEDVEYYSNLRALRSVDRADAVLMMIDAQEGVTD 275

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST-------YTEEYDH-----------LISSFTG 348
             K+I   +  +    +    K DL          YT+E  +            IS+ TG
Sbjct: 276 QDKKIAGYAHDEGKAMVIAINKWDLMEKDSGTMDRYTDEVYYQLKFLNYVPVTYISALTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           E ++EL++ ++ ++     ++   I +
Sbjct: 336 ERIDELLSLLEFVVDQSNLRVKTGILN 362



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L     AIV   P  TRD +  + +  G    + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGGRRAIVEGEPNVTRDRIYGETEWLGKKFNVIDTGGIVLHD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +   K  IK +  + +E ADLIL + +  +          ++ +  N + I +  K + +
Sbjct: 66  NDKIKNQIKYQAEIAMEEADLILFVVDSRTGMTGVDEDIAQLLYRTNKEVILVVNKVEDF 125

Query: 333 STYTE----------EYDHLISSFTGEGLEELINKIKSILS 363
           S   E              LIS+  G+   +L++++K+ L 
Sbjct: 126 SNQEEIGWEFYSLGFGTPFLISAEHGKNTGQLLDQVKANLP 166


>gi|259503207|ref|ZP_05746109.1| ribosome-associated GTPase EngA [Lactobacillus antri DSM 16041]
 gi|259168864|gb|EEW53359.1| ribosome-associated GTPase EngA [Lactobacillus antri DSM 16041]
          Length = 437

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHGEWLGKNFNMIDTGGIELSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +  +  ++  + ++ AD+I+L+ ++ S           I +  N   +    K D   
Sbjct: 66  QPLLTQIRQQAEIAIDEADVIVLVVDVESGVTDADEQVARILYRSNKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G GL +L++ +                
Sbjct: 126 RRNDVYDFYSLGLGEPYPVSSVHGVGLGDLLDAVIHHFPENAANEADDSI 175



 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 89/212 (41%), Gaps = 36/212 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  H  +    E   +  +  ++G  N GKSSL N +  ++  IV+++ GTTRD 
Sbjct: 154 DLLDAVIHHFPENAANEAD-DSIRFSLIGRPNVGKSSLVNGILGENRVIVSNMAGTTRDA 212

Query: 258 LTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +    +  +G    + DTAGIR+   I    E+  + R    ++++D++L++  +N+++ 
Sbjct: 213 INTRFVAPDGQEFTMIDTAGIRKQGKIYENTERYALMRAMRAIDDSDVVLVV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYSTYTEE-------------------YDHLIS 344
           I          +       I    K D      +                        +S
Sbjct: 271 IREIDKHIAGYAHEAGCGVIIAVNKWDTIEGRDQRTMTDFTNLIRHEFQYLSYAPIIFVS 330

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           + T + L +L   I+ + ++  +++  S+ ++
Sbjct: 331 AKTKQRLNKLPEMIEEVYAHHERRIKSSVLNN 362


>gi|114562298|ref|YP_749811.1| GTP-binding protein EngA [Shewanella frigidimarina NCIMB 400]
 gi|122300418|sp|Q085U2|DER_SHEFN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|114333591|gb|ABI70973.1| small GTP-binding protein [Shewanella frigidimarina NCIMB 400]
          Length = 488

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I +  EG    + DTAG+R 
Sbjct: 200 IKLAIIGKPNVGKSTLINRILGEERVVVYDEPGTTRDSIYIPMSREGREYVLIDTAGVRR 259

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTK 328
             + ++++EK  + +T   VE+A+++LL+ +     +++++     +       +    K
Sbjct: 260 RSKVNEVIEKFSVIKTLKAVEDANVVLLVIDAREGIAEQDLGLLGFTLNAGRALVIAINK 319

Query: 329 SD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D     +      E D           H IS+  G G+  L   I+    +  +++  S
Sbjct: 320 WDGIDQKVKDRVKSELDRRLGFIDFARIHFISALHGTGVGHLYESIEEAYDSATRRVSTS 379

Query: 373 IPSH 376
           + + 
Sbjct: 380 MLTR 383



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLAGYEFIVVDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSD 330
           + +E +  +++   +E AD++L + +  +     +++       ++     +  K D
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARAGMTAADLAIAQHLRSRDKVTFVVANKVD 121


>gi|304406963|ref|ZP_07388617.1| ribosome-associated GTPase EngA [Paenibacillus curdlanolyticus YK9]
 gi|304343950|gb|EFM09790.1| ribosome-associated GTPase EngA [Paenibacillus curdlanolyticus YK9]
          Length = 440

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 19/171 (11%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +     + +    E   +  ++ ++G  N GKSSL NA+  ++  IV+D+ GTTRD 
Sbjct: 155 DLLDAAVEKLPEQVDEEYDEDVIRVALIGRPNVGKSSLVNAILGEERVIVSDVAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    + +G    + DTAG+R+   +    EK  + R+   +E AD++L+L  IN ++ I
Sbjct: 215 IDTPFEKDGQRYVLIDTAGMRKRGKVYETTEKYSVMRSLKAIERADVVLIL--INGEEGI 272

Query: 315 ----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
                     +       IF+  K D      E  +  +S FT +  +  +
Sbjct: 273 IEQDKHIAGYAHEAGKASIFVVNKWDAV----ERDEKTMSHFTQDVRDHFL 319



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS++FN +    +AIV D PG TRD +    +  G    I DT GI  + 
Sbjct: 6   IAIVGRPNVGKSTIFNRVIGDRLAIVEDKPGVTRDRIYGTGEWNGRAFSIVDTGGIEIDG 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           +D + K    +  L VE AD+I+ + +         +   ++ F      +    K D +
Sbjct: 66  EDEIMKSVRMQAELAVEEADVIIFMVDAKAGMTHADDEVAQMLFRSRKPIVVAVNKVDNF 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
           +   + Y+           IS   G G+ +L++     L  +  + 
Sbjct: 126 NRMDDVYEFYGLGFGTPVAISGSHGTGIGDLLDAAVEKLPEQVDEE 171


>gi|198283717|ref|YP_002220038.1| GTP-binding protein EngA [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667499|ref|YP_002426346.1| ribosome-associated GTPase EngA [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|226741127|sp|B7JC34|DER_ACIF2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238690897|sp|B5EJF7|DER_ACIF5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|198248238|gb|ACH83831.1| small GTP-binding protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519712|gb|ACK80298.1| ribosome-associated GTPase EngA [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 449

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 110/296 (37%), Gaps = 34/296 (11%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE---TEMQRRLSMEGMSGEL 154
            +                      ++ + EA+++  L+ ++   +     ++ E   G  
Sbjct: 53  LVVDTGGFEPEEREGLVAAMAAQTRLAITEADAICFLVDAKEGLSTQDAEIAQELRRGG- 111

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK--L 212
                  ++K+    +  E    +          S    + +  L   I S +   +   
Sbjct: 112 -KPIYLVVNKMDAKGAVSELPEFYRLGLGTPYTISAAHGHGVEPLLEAIFSDLPTSEDDT 170

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
            +  R G +I +LG  N GKS+L N +  +   +V D PGTTRD + I  + +G    + 
Sbjct: 171 ADAARKGPRIAMLGRPNVGKSTLVNTMLGEKRVLVFDEPGTTRDSIRIPYERQGKPYVMI 230

Query: 273 DTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKE-----ISFPKNID 321
           DTAG+R    +    EK  + +T   +  AD++LL+ +     ++++     ++      
Sbjct: 231 DTAGMRRRARVGEGLEKLSVLKTLSALREADVVLLVLDARLGIAEQDAHLVGVAVELGRP 290

Query: 322 FIFIGTKSD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSI 361
            + +  K D           +E +           + IS+  G G+ +L   I  +
Sbjct: 291 IVVVVNKWDGMTPEERKAVKQELERRLDFIRYAPVYTISALHGTGVGDLYKSIDQL 346



 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 58/155 (37%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+ FN L +   A+V D+PG TRD        EG    + DT G    +
Sbjct: 5   IALVGRPNVGKSTFFNRLTRTREALVADLPGLTRDRHYGTAQFEGRQYLVVDTGGFEPEE 64

Query: 282 DIVEK-EGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
                     +T L +  AD I  L +     S ++    +           +  K D  
Sbjct: 65  REGLVAAMAAQTRLAITEADAICFLVDAKEGLSTQDAEIAQELRRGGKPIYLVVNKMDAK 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKI 358
              +E  +            S+  G G+E L+  I
Sbjct: 125 GAVSELPEFYRLGLGTPYTISAAHGHGVEPLLEAI 159


>gi|205353618|ref|YP_002227419.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|238690507|sp|B5RCY8|DER_SALG2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|205273399|emb|CAR38374.1| putative GTP-binding protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628718|gb|EGE35061.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 490

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E                  H IS+  G  +  L   ++    +  +++  +
Sbjct: 323 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSDVGNLFESVREAYDSSTRRVSTA 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|298368463|ref|ZP_06979781.1| ribosome-associated GTPase EngA [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282466|gb|EFI23953.1| ribosome-associated GTPase EngA [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 492

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  +I     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 162 LIEEILEKFPEPEAEEADVKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 221

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 222 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 281

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 282 DATIAGFALEAGRALVVAVNKWDGISEERREQIKRDISRKLYFLDFAKFHFISALKERGI 341

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 342 DGLFDSIQAAYNAAMIKMPTPKITR 366



 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 63/167 (37%), Gaps = 20/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 12  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGFEPVV 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 72  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSQRPVYLAVNKGEGG 131

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                 ++ Y     E  H+IS   G+G+  LI +I         + 
Sbjct: 132 NRAVLAAEFYELALGE-PHVISGAHGDGVYYLIEEILEKFPEPEAEE 177


>gi|229592437|ref|YP_002874556.1| GTP-binding protein EngA [Pseudomonas fluorescens SBW25]
 gi|229364303|emb|CAY52040.1| GTP-binding protein [Pseudomonas fluorescens SBW25]
          Length = 493

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 196 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNDEKYTLIDTAG 255

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   I    EK  + +T   +++A++++ + +               +       +  
Sbjct: 256 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 315

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D  +    ++                 H IS+  G G+  L   +++   +   + 
Sbjct: 316 INKWDGMTPSERDFVKIELQRRLFFVEFADIHFISALHGTGVGNLYASVQNSFKSAVTRW 375

Query: 370 PFS 372
           P +
Sbjct: 376 PTN 378



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   AIV D+ G TRD    +   +G    I DT GI   +
Sbjct: 9   IALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYIIVDTGGISGDE 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ L +E AD++L L +  +          E    +N     +  K D
Sbjct: 69  HGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYLVANKID 125


>gi|116620165|ref|YP_822321.1| GTP-binding protein EngA [Candidatus Solibacter usitatus Ellin6076]
 gi|116223327|gb|ABJ82036.1| small GTP-binding protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 441

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 95/275 (34%), Gaps = 44/275 (16%)

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND--------ISSH 206
                Q + KL    S     +D    +D+ N      + D+  +  +        +   
Sbjct: 103 DRDLAQMLKKLGKPVSLAVNKIDAQVRQDLVNEFYGLGIADVFAISAEHGTGVDAMLDRV 162

Query: 207 ISQGKLGEIIR------NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
                 GE          G K+ I+G  N GKS+L NAL   D AIV+ I GTTRD +  
Sbjct: 163 TEGFARGEKPTAESTEPKGIKVAIIGRPNVGKSTLLNALTGADRAIVSPIAGTTRDAVDE 222

Query: 261 DLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK------ 311
            +  +G      DTAGIR   +T D+ EK  +      +  A ++LL+ +          
Sbjct: 223 TVSHDGQEYVFVDTAGIRRKGKTHDMAEKLSVVMARRHIRMAHVVLLVLDATEGVVALDT 282

Query: 312 --KEISFPKNIDFIFIGTKSD------------LYSTYTEEYDH-------LISSFTGEG 350
                +       I    K D                  +E+          +S+ +G  
Sbjct: 283 TIAGYAHEGGRAVIICVNKWDEVKGQAAQKKNEFEQQIRDEFKFLDYAPVVFLSAKSGSN 342

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           + +L   IK I  +  K++     +      H  +
Sbjct: 343 VPKLFRLIKEIYESASKRVTTGELNRFVDHLHFEE 377



 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 18/157 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +VI+G  N GKS+LFN +  +  AIV D PG TRD L    + +G   ++ DT GI   D
Sbjct: 8   VVIVGRPNVGKSTLFNRITGQRRAIVGDEPGITRDRLHGAAEHDGRHFELIDTGGIVVHD 67

Query: 282 DIVE-KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
                 + +K+    ++ AD I+ L +  ++         ++             K D  
Sbjct: 68  QEYIPAQILKQAEFALKAADHIIFLVDGRAEITGSDRDLAQMLKKLGKPVSLAVNKIDAQ 127

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKS 360
           +      E+          IS+  G G++ +++++  
Sbjct: 128 VRQDLVNEFYGLGIADVFAISAEHGTGVDAMLDRVTE 164


>gi|302335702|ref|YP_003800909.1| ribosome-associated GTPase EngA [Olsenella uli DSM 7084]
 gi|301319542|gb|ADK68029.1| ribosome-associated GTPase EngA [Olsenella uli DSM 7084]
          Length = 439

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L +D+ + + + +    + +G   + I+G  N GKSSL N LA+++ +IV D+ GTTRD
Sbjct: 156 DLLDDVVASLPEIREEPAVDDGTLNVAIIGRPNVGKSSLTNRLARRERSIVADVAGTTRD 215

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---- 309
            + I +  +G    + DTAG+R+ + +    E   + R    ++ AD+ LL+ +      
Sbjct: 216 AVDITIAWKGQRFCLVDTAGMRKRNQVHEDVEYYSLVRGLEAMDRADVCLLVVDSTVGVT 275

Query: 310 ----SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
                   ++  +    + +  K DL +   +  + + S
Sbjct: 276 EQDQKLAGMAIDRGCAVVIVLNKWDLITGDRQRDEVMSS 314



 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 19/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-- 279
           + ++G  N GKS+L N LA    AIV +  G TRD      D  G    + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLVNRLAVNRDAIVHESRGVTRDRSYHACDWNGREFVLIDTGGIESAR 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDL 331
           + D+      ++  +  + AD I+ + +      +  +E++               K D 
Sbjct: 66  SKDVFAPRIREQALVACDEADAIIFVVDGSVGVTDEDEEVARVVRRTRKPVFLCVNKMDD 125

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSN 364
            ST  + ++            S+  G G  +L++ + + L  
Sbjct: 126 PSTELDAWNFYSLGVGEPRALSAGHGYGTGDLLDDVVASLPE 167


>gi|312962901|ref|ZP_07777388.1| GTP-binding protein EngA [Pseudomonas fluorescens WH6]
 gi|311282928|gb|EFQ61522.1| GTP-binding protein EngA [Pseudomonas fluorescens WH6]
          Length = 489

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 192 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNDEKYTLIDTAG 251

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   I    EK  + +T   +++A++++ + +               +       +  
Sbjct: 252 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 311

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D  +    ++                 H IS+  G G+  L   +++   +   + 
Sbjct: 312 INKWDGMTPSERDFVKIELQRRLFFVEFADIHFISALHGTGVGNLYASVQNSFKSAVTRW 371

Query: 370 PFS 372
           P +
Sbjct: 372 PTN 374



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   AIV D+ G TRD    +   +G    I DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYIIVDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ L +E AD++L L +  +          E    +N     I  K D
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYLIANKID 121


>gi|51597153|ref|YP_071344.1| GTP-binding protein EngA [Yersinia pseudotuberculosis IP 32953]
 gi|186896248|ref|YP_001873360.1| GTP-binding protein EngA [Yersinia pseudotuberculosis PB1/+]
 gi|81825749|sp|Q668A3|DER_YERPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238691441|sp|B2K9P6|DER_YERPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|51590435|emb|CAH22075.1| putative GTP-binding protein [Yersinia pseudotuberculosis IP 32953]
 gi|186699274|gb|ACC89903.1| small GTP-binding protein [Yersinia pseudotuberculosis PB1/+]
          Length = 495

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 28/240 (11%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
           +L         D +  E E      +     +      D+     +           K+ 
Sbjct: 153 QLIEDVMAPYMDAEEPEVELTDEEENAAYWAEQEAQGEDVPPEDPEDDFDPRTL-PIKLA 211

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-- 281
           I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+    
Sbjct: 212 IVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDDREYILIDTAGVRKRGKI 271

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLY 332
            + VEK  + +T   +E+++++LL+ +     S +++S            +    K D  
Sbjct: 272 TETVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWDGM 331

Query: 333 STYTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           +                       H IS+  G G+  L   ++       K++  S+ + 
Sbjct: 332 TEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESVQEAYDCSTKRVGTSLLTR 391



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           D VE +   ++ L +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN 356
             T   D         H I++  G G+ +LI 
Sbjct: 125 PDTATADFYSLGLGEVHAIAASHGRGVTQLIE 156


>gi|312622952|ref|YP_004024565.1| ribosome-associated GTPase enga [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203419|gb|ADQ46746.1| ribosome-associated GTPase EngA [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 440

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 82/207 (39%), Gaps = 11/207 (5%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  M           ++K+ +I         +          S E    +  + + + ++
Sbjct: 103 VANMLRASKKPIVLAVNKIDNISQQAMIYEFYELGLSDPIAMSAEHGAGVGDVLDAVVNY 162

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++  + EI     K+ I+G  N GKSSL N +  ++  IV+DIPGTTRD +    + EG
Sbjct: 163 FNKEGINEIEEGTIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTFEFEG 222

Query: 267 YLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEIS 315
             + + DTAG+R    I    E+  + RT   +E +D+ ++L +               +
Sbjct: 223 IPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIILLDGTENVSEQDAKVAGYA 282

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHL 342
           +      I    K D      +  D  
Sbjct: 283 YEAGKGCIVAVNKWDAVEKDEKTADEF 309



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  +  AIV D PG TRD +  + +  G    + DT GI   +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPYS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           +DI+ K+  ++    ++ +D+I+ + +      ++ +E++          +    K D  
Sbjct: 65  EDIILKQMRRQAQFAIDMSDVIIFMVDGKTGLTDADREVANMLRASKKPIVLAVNKIDNI 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
           S     Y+           +S+  G G+ ++++ + +  + +    
Sbjct: 125 SQQAMIYEFYELGLSDPIAMSAEHGAGVGDVLDAVVNYFNKEGINE 170


>gi|227524465|ref|ZP_03954514.1| GTP-binding protein EngA [Lactobacillus hilgardii ATCC 8290]
 gi|227088335|gb|EEI23647.1| GTP-binding protein EngA [Lactobacillus hilgardii ATCC 8290]
          Length = 435

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 30/204 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I     + + G +  +  +  I+G  N GKSSL NA+  ++  IV+D+ GTTRD 
Sbjct: 154 DLLDKIVEKFPK-ETGNVPNDDIRFSIIGRPNVGKSSLVNAILGENRVIVSDVAGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN----- 309
           +    + +     + DTAGIR+   +    E+  + R    ++ +D+IL +         
Sbjct: 213 IDTRFEADNIKFTMVDTAGIRKRGKVYENTERYSVMRAMKAIDQSDVILFVINAEGGIRE 272

Query: 310 ------------SKKEISFPKNIDFIFIGT--KSDLYSTYTEEYDHL-------ISSFTG 348
                        K  I+     D +      + D  +    E+ ++       +S+ T 
Sbjct: 273 QDKKVAGYAHEAGKAIITVVNKWDTLKKTNHTQQDFETLIRNEFQYMAYSPIIFVSAKTK 332

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           + +E+L   IK +  N  K++  S
Sbjct: 333 QRIEQLPALIKRVYDNHEKRVQSS 356



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G  N GKS++FN +A   ++IV D PG TRD +    +       + DT GI+ +D
Sbjct: 6   VAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTHAEWLANEFAMIDTGGIQISD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFIGTKSDLYS 333
                +   +  + +E AD+I+ +         +     +I +  +   +    K+D   
Sbjct: 66  APFNTQIKNQAEIAIEEADVIVFIVSAKEGLTSDDEQVAKILYRSDKPVVLAVNKADNPD 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370
              + YD           IS   G G+ +L++KI      +   +P
Sbjct: 126 AREDIYDFYALGFGDPMPISGVHGTGIGDLLDKIVEKFPKETGNVP 171


>gi|153853314|ref|ZP_01994723.1| hypothetical protein DORLON_00710 [Dorea longicatena DSM 13814]
 gi|149754100|gb|EDM64031.1| hypothetical protein DORLON_00710 [Dorea longicatena DSM 13814]
          Length = 442

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + + +H  + +  E      ++ I+G  N GKSS+ N L  K   IV+D+ GTTRD 
Sbjct: 156 DMLDAVIAHFPEHEAEEKEDERPRVAIVGKPNVGKSSIINKLTGKQRVIVSDVAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++   G      DTAG+R    I    E+  I RT   VE AD++L++ +       
Sbjct: 216 IDTNVKYNGKDYVFIDTAGLRRKSKIKEELERYSIIRTVTAVERADVVLVVIDATEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE---EYDH---------------LISSFTG 348
                  I+  +    I +  K D      +   EY++                +S+ TG
Sbjct: 276 QDAKIAGIAHERGKGIIIVVNKWDAIEKNDKTMREYENNVRRVLSFMPYAEIMYVSAETG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + I  ++ N+  ++   + +
Sbjct: 336 QRLNKLYDMIDMVIENQTLRVATGVLN 362



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 74/161 (45%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  D+        + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADVTWLDKEFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + ++ AD+I+        L + +SK  ++        +    K D +
Sbjct: 66  KDIILSQMREQAQIAIDTADVIIFITDVRQGLVDADSKVADMLRRSGKPVVLAVNKVDNF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILS 363
             +  +              +S+ +  G+ ++++ + +   
Sbjct: 126 DKFMPDVYEFYNLGIGDPVPVSAASRLGIGDMLDAVIAHFP 166


>gi|126658269|ref|ZP_01729419.1| GTP-binding protein EngA [Cyanothece sp. CCY0110]
 gi|126620418|gb|EAZ91137.1| GTP-binding protein EngA [Cyanothece sp. CCY0110]
          Length = 452

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 12/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++ +++         R    + I+G  N GKSSL NA   +  AIV+ I GTTRD 
Sbjct: 156 ELLDELITYLPSPDE-LPDREEINVSIIGRPNVGKSSLLNAFLGEQRAIVSPISGTTRDT 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINS---K 311
           +   ++      ++ DTAGIR   ++    E   I R F  +  AD++LL+ +       
Sbjct: 215 IDTVVERGENTYRLIDTAGIRRKKNVNYGAEFFSINRAFKAIRRADVVLLVIDAIDGVTD 274

Query: 312 KEISFP-----KNIDFIFIGTKSDLYST 334
           ++I        +    I +  K D    
Sbjct: 275 QDIKLADRIIDEGRAAIIVVNKWDAVEK 302



 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LAK   AIV D PG TRD             ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLAKDRQAIVHDQPGITRDRTYRPAFWRDRDFQVVDTGGLVFDD 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLY 332
           D        ++    +  A   + + +         +EIS     + +  +    K +  
Sbjct: 66  DTEFLPLIREQAMAALTEASAAIFVVDGQLGPTAGDREISDWLRRQQVPVLLAVNKCESP 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILS 363
                +               S   G G  EL++++ + L 
Sbjct: 126 EQGLMQAAEFWELGLGEPYPISGIHGSGTGELLDELITYLP 166


>gi|42780705|ref|NP_977952.1| GTP-binding protein EngA [Bacillus cereus ATCC 10987]
 gi|81831124|sp|Q73AZ1|DER_BACC1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|42736625|gb|AAS40560.1| GTPase family protein [Bacillus cereus ATCC 10987]
          Length = 436

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++ + H  + +      +  +  ++G  N GKSSL NAL  ++  IV+++ GTTRD 
Sbjct: 154 DLLDEAAQHFPKIEEDGYDEDTIRFSLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +      +G    I DTAG+R+   +    EK  + R    +E +D++L++ +     I 
Sbjct: 214 VDTPYSKDGKDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIE 273

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST 334
             K+I   +       + +  K D    
Sbjct: 274 QDKKIAGYAHDSGRAVVIVVNKWDAVKK 301



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + +  E    I +  N   +    K D   
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSNKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
             ++ YD           IS   G GL +L+++         +  
Sbjct: 126 MRSDIYDFYALGFGEPFPISGTHGLGLGDLLDEAAQHFPKIEEDG 170


>gi|30019652|ref|NP_831283.1| GTP-binding protein EngA [Bacillus cereus ATCC 14579]
 gi|30261599|ref|NP_843976.1| GTP-binding protein EngA [Bacillus anthracis str. Ames]
 gi|47526799|ref|YP_018148.1| GTP-binding protein EngA [Bacillus anthracis str. 'Ames Ancestor']
 gi|47565966|ref|ZP_00237004.1| GTP-binding protein, Era/ThdF family [Bacillus cereus G9241]
 gi|49184431|ref|YP_027683.1| GTP-binding protein EngA [Bacillus anthracis str. Sterne]
 gi|49477254|ref|YP_035720.1| GTP-binding protein EngA [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52143844|ref|YP_082984.1| GTP-binding protein EngA [Bacillus cereus E33L]
 gi|65318869|ref|ZP_00391828.1| COG1160: Predicted GTPases [Bacillus anthracis str. A2012]
 gi|118477058|ref|YP_894209.1| GTP-binding protein EngA [Bacillus thuringiensis str. Al Hakam]
 gi|165869461|ref|ZP_02214120.1| GTPase family protein [Bacillus anthracis str. A0488]
 gi|167633435|ref|ZP_02391760.1| GTPase family protein [Bacillus anthracis str. A0442]
 gi|167639189|ref|ZP_02397462.1| GTPase family protein [Bacillus anthracis str. A0193]
 gi|170686176|ref|ZP_02877398.1| GTPase family protein [Bacillus anthracis str. A0465]
 gi|170706475|ref|ZP_02896935.1| GTPase family protein [Bacillus anthracis str. A0389]
 gi|177650444|ref|ZP_02933411.1| GTPase family protein [Bacillus anthracis str. A0174]
 gi|190568605|ref|ZP_03021510.1| ribosome-associated GTPase EngA [Bacillus anthracis Tsiankovskii-I]
 gi|196033560|ref|ZP_03100972.1| ribosome-associated GTPase EngA [Bacillus cereus W]
 gi|196038987|ref|ZP_03106294.1| ribosome-associated GTPase EngA [Bacillus cereus NVH0597-99]
 gi|196046647|ref|ZP_03113871.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB108]
 gi|206970720|ref|ZP_03231672.1| ribosome-associated GTPase EngA [Bacillus cereus AH1134]
 gi|206974925|ref|ZP_03235840.1| ribosome-associated GTPase EngA [Bacillus cereus H3081.97]
 gi|217959081|ref|YP_002337629.1| GTP-binding protein EngA [Bacillus cereus AH187]
 gi|218231181|ref|YP_002366284.1| GTP-binding protein EngA [Bacillus cereus B4264]
 gi|218902715|ref|YP_002450549.1| ribosome-associated GTPase EngA [Bacillus cereus AH820]
 gi|222095233|ref|YP_002529293.1| gtp-binding protein enga [Bacillus cereus Q1]
 gi|225863467|ref|YP_002748845.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB102]
 gi|227815649|ref|YP_002815658.1| ribosome-associated GTPase EngA [Bacillus anthracis str. CDC 684]
 gi|228914177|ref|ZP_04077795.1| GTP-binding protein engA [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228920314|ref|ZP_04083661.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228926634|ref|ZP_04089703.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932889|ref|ZP_04095756.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228945203|ref|ZP_04107559.1| GTP-binding protein engA [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228951980|ref|ZP_04114077.1| GTP-binding protein engA [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228957879|ref|ZP_04119619.1| GTP-binding protein engA [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228984682|ref|ZP_04144855.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229043348|ref|ZP_04191066.1| GTP-binding protein engA [Bacillus cereus AH676]
 gi|229069156|ref|ZP_04202447.1| GTP-binding protein engA [Bacillus cereus F65185]
 gi|229078786|ref|ZP_04211339.1| GTP-binding protein engA [Bacillus cereus Rock4-2]
 gi|229090565|ref|ZP_04221800.1| GTP-binding protein engA [Bacillus cereus Rock3-42]
 gi|229109059|ref|ZP_04238659.1| GTP-binding protein engA [Bacillus cereus Rock1-15]
 gi|229121146|ref|ZP_04250383.1| GTP-binding protein engA [Bacillus cereus 95/8201]
 gi|229126917|ref|ZP_04255928.1| GTP-binding protein engA [Bacillus cereus BDRD-Cer4]
 gi|229138297|ref|ZP_04266892.1| GTP-binding protein engA [Bacillus cereus BDRD-ST26]
 gi|229144202|ref|ZP_04272616.1| GTP-binding protein engA [Bacillus cereus BDRD-ST24]
 gi|229149801|ref|ZP_04278030.1| GTP-binding protein engA [Bacillus cereus m1550]
 gi|229155169|ref|ZP_04283281.1| GTP-binding protein engA [Bacillus cereus ATCC 4342]
 gi|229178011|ref|ZP_04305383.1| GTP-binding protein engA [Bacillus cereus 172560W]
 gi|229183798|ref|ZP_04311015.1| GTP-binding protein engA [Bacillus cereus BGSC 6E1]
 gi|229189685|ref|ZP_04316699.1| GTP-binding protein engA [Bacillus cereus ATCC 10876]
 gi|229195804|ref|ZP_04322564.1| GTP-binding protein engA [Bacillus cereus m1293]
 gi|229602142|ref|YP_002866007.1| ribosome-associated GTPase EngA [Bacillus anthracis str. A0248]
 gi|254683091|ref|ZP_05146952.1| GTP-binding protein EngA [Bacillus anthracis str. CNEVA-9066]
 gi|254723679|ref|ZP_05185465.1| GTP-binding protein EngA [Bacillus anthracis str. A1055]
 gi|254734440|ref|ZP_05192152.1| GTP-binding protein EngA [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740851|ref|ZP_05198539.1| GTP-binding protein EngA [Bacillus anthracis str. Kruger B]
 gi|254755089|ref|ZP_05207123.1| GTP-binding protein EngA [Bacillus anthracis str. Vollum]
 gi|254759626|ref|ZP_05211650.1| GTP-binding protein EngA [Bacillus anthracis str. Australia 94]
 gi|296502173|ref|YP_003663873.1| GTP-binding protein EngA [Bacillus thuringiensis BMB171]
 gi|300117468|ref|ZP_07055258.1| GTP-binding protein EngA [Bacillus cereus SJ1]
 gi|301053141|ref|YP_003791352.1| GTP-binding protein EngA [Bacillus anthracis CI]
 gi|37999522|sp|Q81FR5|DER_BACCR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|37999526|sp|Q81SW9|DER_BACAN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|81824337|sp|Q63DM8|DER_BACCZ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|81828346|sp|Q6HL51|DER_BACHK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166224305|sp|A0RBV9|DER_BACAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226741128|sp|B7JGY9|DER_BACC0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226741130|sp|B7HHQ7|DER_BACC4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226741131|sp|B7HL14|DER_BACC7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783135|sp|C3P591|DER_BACAA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783136|sp|C3L9F4|DER_BACAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783137|sp|C1EN01|DER_BACC3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783138|sp|B9IVM6|DER_BACCQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|29895196|gb|AAP08484.1| GTP-binding protein [Bacillus cereus ATCC 14579]
 gi|30255453|gb|AAP25462.1| ribosome-associated GTPase EngA [Bacillus anthracis str. Ames]
 gi|47501947|gb|AAT30623.1| GTPase family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|47556883|gb|EAL15213.1| GTP-binding protein, Era/ThdF family [Bacillus cereus G9241]
 gi|49178358|gb|AAT53734.1| GTPase family protein [Bacillus anthracis str. Sterne]
 gi|49328810|gb|AAT59456.1| GTP-binding protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51977313|gb|AAU18863.1| GTP-binding protein [Bacillus cereus E33L]
 gi|118416283|gb|ABK84702.1| GTP-binding protein [Bacillus thuringiensis str. Al Hakam]
 gi|164714901|gb|EDR20419.1| GTPase family protein [Bacillus anthracis str. A0488]
 gi|167512979|gb|EDR88352.1| GTPase family protein [Bacillus anthracis str. A0193]
 gi|167531473|gb|EDR94151.1| GTPase family protein [Bacillus anthracis str. A0442]
 gi|170128573|gb|EDS97440.1| GTPase family protein [Bacillus anthracis str. A0389]
 gi|170669873|gb|EDT20614.1| GTPase family protein [Bacillus anthracis str. A0465]
 gi|172083588|gb|EDT68648.1| GTPase family protein [Bacillus anthracis str. A0174]
 gi|190560205|gb|EDV14185.1| ribosome-associated GTPase EngA [Bacillus anthracis Tsiankovskii-I]
 gi|195993994|gb|EDX57950.1| ribosome-associated GTPase EngA [Bacillus cereus W]
 gi|196022580|gb|EDX61263.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB108]
 gi|196030132|gb|EDX68732.1| ribosome-associated GTPase EngA [Bacillus cereus NVH0597-99]
 gi|206734356|gb|EDZ51526.1| ribosome-associated GTPase EngA [Bacillus cereus AH1134]
 gi|206746944|gb|EDZ58336.1| ribosome-associated GTPase EngA [Bacillus cereus H3081.97]
 gi|217067748|gb|ACJ81998.1| ribosome-associated GTPase EngA [Bacillus cereus AH187]
 gi|218159138|gb|ACK59130.1| ribosome-associated GTPase EngA [Bacillus cereus B4264]
 gi|218536841|gb|ACK89239.1| ribosome-associated GTPase EngA [Bacillus cereus AH820]
 gi|221239291|gb|ACM12001.1| GTP-binding protein [Bacillus cereus Q1]
 gi|225788315|gb|ACO28532.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB102]
 gi|227004060|gb|ACP13803.1| ribosome-associated GTPase EngA [Bacillus anthracis str. CDC 684]
 gi|228587701|gb|EEK45759.1| GTP-binding protein engA [Bacillus cereus m1293]
 gi|228593734|gb|EEK51539.1| GTP-binding protein engA [Bacillus cereus ATCC 10876]
 gi|228599647|gb|EEK57250.1| GTP-binding protein engA [Bacillus cereus BGSC 6E1]
 gi|228605499|gb|EEK62948.1| GTP-binding protein engA [Bacillus cereus 172560W]
 gi|228628296|gb|EEK85011.1| GTP-binding protein engA [Bacillus cereus ATCC 4342]
 gi|228633665|gb|EEK90265.1| GTP-binding protein engA [Bacillus cereus m1550]
 gi|228639210|gb|EEK95626.1| GTP-binding protein engA [Bacillus cereus BDRD-ST24]
 gi|228645189|gb|EEL01426.1| GTP-binding protein engA [Bacillus cereus BDRD-ST26]
 gi|228656517|gb|EEL12344.1| GTP-binding protein engA [Bacillus cereus BDRD-Cer4]
 gi|228662265|gb|EEL17868.1| GTP-binding protein engA [Bacillus cereus 95/8201]
 gi|228674337|gb|EEL29581.1| GTP-binding protein engA [Bacillus cereus Rock1-15]
 gi|228692768|gb|EEL46492.1| GTP-binding protein engA [Bacillus cereus Rock3-42]
 gi|228704468|gb|EEL56901.1| GTP-binding protein engA [Bacillus cereus Rock4-2]
 gi|228713908|gb|EEL65792.1| GTP-binding protein engA [Bacillus cereus F65185]
 gi|228725996|gb|EEL77235.1| GTP-binding protein engA [Bacillus cereus AH676]
 gi|228775076|gb|EEM23469.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228801795|gb|EEM48672.1| GTP-binding protein engA [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228807705|gb|EEM54227.1| GTP-binding protein engA [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228814438|gb|EEM60703.1| GTP-binding protein engA [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228826810|gb|EEM72577.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833010|gb|EEM78578.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228839337|gb|EEM84631.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228845510|gb|EEM90543.1| GTP-binding protein engA [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229266550|gb|ACQ48187.1| ribosome-associated GTPase EngA [Bacillus anthracis str. A0248]
 gi|296323225|gb|ADH06153.1| GTP-binding protein EngA [Bacillus thuringiensis BMB171]
 gi|298725303|gb|EFI65955.1| GTP-binding protein EngA [Bacillus cereus SJ1]
 gi|300375310|gb|ADK04214.1| GTP-binding protein EngA [Bacillus cereus biovar anthracis str. CI]
 gi|324325620|gb|ADY20880.1| GTP-binding protein Der [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 436

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++ + H  + +      +  +  ++G  N GKSSL NAL  ++  IV+++ GTTRD 
Sbjct: 154 DLLDEAAQHFPKIEEDGYDEDTIRFSLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +      +G    I DTAG+R+   +    EK  + R    +E +D++L++ +     I 
Sbjct: 214 VDTPYSKDGKDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIE 273

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST 334
             K+I   +       + +  K D    
Sbjct: 274 QDKKIAGYAHDSGRAVVIVVNKWDAVKK 301



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + +  E    I +  N   +    K D   
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSNKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
             ++ YD           IS   G GL +L+++         +  
Sbjct: 126 MRSDIYDFYALGFGEPFPISGTHGLGLGDLLDEAAQHFPKIEEDG 170


>gi|308389025|gb|ADO31345.1| putative GTP-binding protein EngA [Neisseria meningitidis alpha710]
          Length = 485

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  +I  +  + ++ E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 155 LIEEILENFPEPEVEEADAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + +G    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFERKGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 335 DGLFDSIQAAYNAAMIKMPTPKITR 359



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                +  +        ++IS   G+G+  LI +I  
Sbjct: 125 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEEILE 161


>gi|269926863|ref|YP_003323486.1| small GTP-binding protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790523|gb|ACZ42664.1| small GTP-binding protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 448

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 11/126 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            +I I+G  N GKS L NA+  ++ AIV+D+PGTTRD +  ++      + + DTAGIR 
Sbjct: 186 VRIAIVGRPNVGKSRLLNAILGQERAIVSDVPGTTRDPVDTEIQWGDQRIVLIDTAGIRR 245

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTK 328
             + +  +E+  + RT   +  +D++LLL +                  +    + +  K
Sbjct: 246 RGKVESGIEQYSVFRTLRAIGRSDVVLLLIDAQEGLTAQDEHIAGYVLEEYKGLVLVVNK 305

Query: 329 SDLYST 334
            DL   
Sbjct: 306 WDLVEK 311



 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 24/161 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + I+G  N GKS+ FN L  +  AIV D PGTTRD L  ++   G    I DT G+    
Sbjct: 7   VAIVGRPNVGKSTFFNRLLGERAAIVQDEPGTTRDRLYGEVSWRGRTFTIVDTGGLETSV 66

Query: 278 ---RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIG 326
               +  D + +   ++    +  ADLI+ + ++ +          ++    N   I   
Sbjct: 67  DSSSDEPDPIRRMVREQAEQAIREADLIVFMIDVKTGPTPSDYEIADLLRRTNKPTILAV 126

Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            K+D      E  +           +S++ G G+  L++++
Sbjct: 127 NKADSPQREYEAVEFYSLGMGDPIPVSAYHGMGITPLLDRV 167


>gi|146283357|ref|YP_001173510.1| GTP-binding protein EngA [Pseudomonas stutzeri A1501]
 gi|166225844|sp|A4VNW7|DER_PSEU5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145571562|gb|ABP80668.1| GTP-binding protein EngA [Pseudomonas stutzeri A1501]
 gi|327481749|gb|AEA85059.1| GTP-binding protein EngA [Pseudomonas stutzeri DSM 4166]
          Length = 499

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 32/199 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + G KI I+G  N GKS+L N +  ++  IV D  GTTRD + I  + +     + DTAG
Sbjct: 201 KEGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERDEEKYTLIDTAG 260

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R    I    EK  + +T   +++A++++ + +                       +  
Sbjct: 261 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLLGFVLETGRALVIA 320

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D      ++Y                 H IS+  G G+  L   +++   +   + 
Sbjct: 321 LNKWDGMEQGEKDYVKTELERRLFFVDYADIHFISAKHGTGVGHLYKSVQAAFKSAITRW 380

Query: 370 PFSIPSHKRHLYHLSQTVR 388
           P S     R    L   VR
Sbjct: 381 PTS-----RLTQILEDAVR 394



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   AIV +  G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEAKWQGRTYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
           + ++ +  +++   +E AD +L + +  +          E    +N     +  K D   
Sbjct: 65  EGIDAKMAEQSLQAIEEADAVLFMVDSRAGLTAADQMIGEHLRKRNKRCFLVANKVDSVD 124

Query: 334 TYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKK 368
                 +           I++  G G+  ++ +   I       
Sbjct: 125 PDIARAEFSPLGLGDALPIAAAHGRGISHMLEQALGIFPKDNAD 168


>gi|315499685|ref|YP_004088488.1| ribosome-associated gtpase enga [Asticcacaulis excentricus CB 48]
 gi|315417697|gb|ADU14337.1| ribosome-associated GTPase EngA [Asticcacaulis excentricus CB 48]
          Length = 550

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 18/159 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+LFN LA K +AIV D PG TRD       +    + + DTAG  +
Sbjct: 25  LKIAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYASGHIGDIDLDLIDTAGFED 84

Query: 280 TDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             D   E    ++T   +E  D+ L + +             +I   K+   I I  K++
Sbjct: 85  VADTSLEARMRQQTEKAIEECDVALFVMDAREGVVPLDRIFADILRFKDKPVILIANKAE 144

Query: 331 LYSTYTE---------EYDHLISSFTGEGLEELINKIKS 360
            ++ +                +S+  GEG+ EL   ++ 
Sbjct: 145 GHAGFAGAEEAHVLGFGAPLHLSAEHGEGISELYEALEK 183



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 12/149 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I I+G  NAGKS+L N L  +D  +     G TRD +++D + EG  +++ DTAG+R 
Sbjct: 207 VRIAIIGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSISVDWEYEGRKIRLVDTAGLRR 266

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK     T   +  A++++L+ +  +  E        +   +    I++ +K
Sbjct: 267 KARVQEKLEKLSTADTIRAITFAEVVILVMDQENAFETQDLQIADLVEREGRALIYVISK 326

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINK 357
            D      +   H +S      L +L   
Sbjct: 327 WDTVEE-PQARLHELSEIAERMLPQLRGA 354


>gi|149369730|ref|ZP_01889582.1| GTP-binding protein EngA [unidentified eubacterium SCB49]
 gi|149357157|gb|EDM45712.1| GTP-binding protein EngA [unidentified eubacterium SCB49]
          Length = 433

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 11/128 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 175 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGIRRK 234

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
             +    E   + R+   +E++D+I+L+ +     +        ++   N   + +  K 
Sbjct: 235 AKVKEDLEFYSVMRSVRAIEHSDVIILVFDATRGFDGQVQNIFWLAHRNNKGVVILANKW 294

Query: 330 DLYSTYTE 337
           DL     E
Sbjct: 295 DLVEKDNE 302



 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN + ++  AIV  + G TRD      D  G    + DT G ++ +
Sbjct: 4   VAIVGRPNVGKSTFFNRMIQRREAIVDAVSGVTRDRHYGKSDWNGREFSLIDTGGYVKGS 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DD+ E E  K+  L ++ AD I+ +  +            ++       F     K D  
Sbjct: 64  DDVFETEIDKQVELAIDEADAIIFMVSVEDGVTGMDEDVLKLLRRSQKPFFVAVNKVDAA 123

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +   +  +            SS  G G  +L++ +   L  + +K+   +P
Sbjct: 124 NRQNDAVEFYNMGIEKFYTLSSINGSGTGDLLDALVDSLPEEEEKVEEELP 174


>gi|315123111|ref|YP_004065117.1| GTP-binding protein EngA [Pseudoalteromonas sp. SM9913]
 gi|315016872|gb|ADT70209.1| GTP-binding protein EngA [Pseudoalteromonas sp. SM9913]
          Length = 489

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  IV D+PGTTRD + I +        + DTAG+R+
Sbjct: 202 VKLAIIGRPNVGKSTLTNRILGEDRVIVYDMPGTTRDSIYIPMTRNDKEYILIDTAGVRK 261

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D+VEK  + +T   +E+ +++LL+ +     S +++S            +    K
Sbjct: 262 RKKVSDVVEKFSVIKTLQAIEDCNVVLLVVDARDGISDQDLSLLGFALNSGRSLVIAVNK 321

Query: 329 SDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D    Y ++                  H IS+  G G+  L   +     +  K++  +
Sbjct: 322 WDGLDNYVKDRIKTELDRRLGFIDFARLHFISALHGTGVGHLFESVDEAYESATKRISTA 381

Query: 373 IPSH 376
           +   
Sbjct: 382 MLRR 385



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD      + +G+   + DT GI  ++
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGFEFIVVDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + +E E   ++ L +E AD++L L +       + + I+     +      +  K+D   
Sbjct: 65  EGIETEMADQSLLAIEEADIVLFLVDARVGMTVADQAIANHLRKQEKKCFVVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINK 357
             +   +         H I++  G G+  L+ +
Sbjct: 125 ADSNCAEFYQLSLGEVHHIAAAHGRGITLLLEQ 157


>gi|148656272|ref|YP_001276477.1| GTP-binding protein EngA [Roseiflexus sp. RS-1]
 gi|148568382|gb|ABQ90527.1| small GTP-binding protein [Roseiflexus sp. RS-1]
          Length = 493

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 13/233 (5%)

Query: 112 EFSRRAFENGKIDLLEAESLADLISS-ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           E +RR  E  +I + EA+++  ++ S E       ++  +    S       +K  +   
Sbjct: 75  EIARRVREQAEIAIEEADAIIFIVDSREGLTAADAAVAEVLRRASKPVVLAANKADNRER 134

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            ++A   ++         S      +  + + ++  +   +  E      KI I+G  N 
Sbjct: 135 ALDAVEFYALNLGEPIPMSAYHGIGVGDVLDRVTDVLPIIEAEE-DDAAVKIAIVGRPNV 193

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKE 287
           GKSSL N L  ++ ++V+D+PGTTRD +   ++++G    + DTAGIR   + +  +E+ 
Sbjct: 194 GKSSLLNRLIGQERSVVSDVPGTTRDSIDTPVEIDGIKALLIDTAGIRRRGKIERGLERY 253

Query: 288 GIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            + R    +E AD+ LLL +              +          +  K DL 
Sbjct: 254 SVMRALRAIERADVALLLIDATEGVTAQDTHIAGMILESLKGVAILVNKWDLV 306



 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 78/179 (43%), Gaps = 26/179 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L  +  AIV DIPGTTRD L  D +  G +  + DTAG+   +
Sbjct: 5   VALVGRPNVGKSTLFNRLIGERRAIVEDIPGTTRDRLYGDTEWNGRVFTVVDTAGLLLDE 64

Query: 282 D---------IVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIF 324
           D          + +   ++  + +E AD I+ + +          +  E+    +   + 
Sbjct: 65  DDLTPGTPQLEIARRVREQAEIAIEEADAIIFIVDSREGLTAADAAVAEVLRRASKPVVL 124

Query: 325 IGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              K+D      +  +           +S++ G G+ ++++++  +L     +   +  
Sbjct: 125 AANKADNRERALDAVEFYALNLGEPIPMSAYHGIGVGDVLDRVTDVLPIIEAEEDDAAV 183


>gi|253567260|ref|ZP_04844710.1| GTP-binding protein engA [Bacteroides sp. 3_2_5]
 gi|251944091|gb|EES84610.1| GTP-binding protein engA [Bacteroides sp. 3_2_5]
          Length = 437

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV D  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNDEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +DDI E+E  K+  + V+ AD+IL + ++ +           I        I +  K+
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDVTNGVTDLDMQVAAILRRAKSPVIMVANKT 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D   L     E Y       + IS+ +G G  +L++ I S    +  ++
Sbjct: 122 DNHELRYNAPEFYRLGLGDPYCISAISGSGTGDLMDLIVSKFKKESDEI 170



 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 31/225 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I S   +     +  +  +  ++G  NAGKSS+ NA   ++  IVT+I GTTRD 
Sbjct: 154 DLMDLIVSKFKKESDEILDEDIPRFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR+ + +    E   + R+   +E AD+ +L+ +     E 
Sbjct: 214 IYTRYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVVRSIRAIEGADVCILMVDATRGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL--SN 364
                  +    +   + +  K DL    T++            ++     I+S      
Sbjct: 274 QDLNIFSLIQKNSKGLVVVVNKWDLVENKTDKV-----------MKTFEEAIRSRFAPFV 322

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEM-------ASLNEKDCGL 402
            F  +  S  + +R L  L +  +  E        A LNE+   L
Sbjct: 323 DFPIVFASALTKQRILKVLEEAHKVYENRMIKIPTARLNEEMLPL 367


>gi|319952374|ref|YP_004163641.1| gtp-binding protein enga [Cellulophaga algicola DSM 14237]
 gi|319421034|gb|ADV48143.1| GTP-binding protein engA [Cellulophaga algicola DSM 14237]
          Length = 435

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 12/170 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   + + K         +  ++G  NAGKSS  NAL  ++  IVTD+ GTTRD 
Sbjct: 154 DLLDALVEVLPE-KEPNRDEELPRFAVVGRPNAGKSSFINALIGEERYIVTDVAGTTRDS 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR    +    E   + R+   +E++D+ +++ +     + 
Sbjct: 213 IDTKYNRFGFEFNLVDTAGIRRKSKVHEDLEFYSVMRSVRAIEHSDVCIIILDATRGFDG 272

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  ++   N   + +  K DL            +    E +   I+
Sbjct: 273 QVQNIFWLAQRNNKGIVILVNKWDLVEDKETNTIKQYTEKIKESMAPFID 322



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L K+  AIV  + G TRD      D  G    + DT G ++ +
Sbjct: 5   VAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKSDWNGREFSVIDTGGYVKGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DD+ E E  K+  L ++ AD+I+ + ++ +           +        +    K D  
Sbjct: 65  DDVFEAEIDKQVELAIDEADVIIFMVDVETGITGMDEDVANLLRRVKKPVLLAVNKVDNN 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               +  +           I+S  G G  +L++ +  +L  K       +P
Sbjct: 125 KRAEDAVEFYSLGLGDYFTIASTNGSGTGDLLDALVEVLPEKEPNRDEELP 175


>gi|33862476|ref|NP_894036.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9313]
 gi|41017013|sp|Q7V8X0|DER_PROMM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|33640589|emb|CAE20378.1| GTP-binding protein (HSR1-related):AAA ATPase superfamily
           [Prochlorococcus marinus str. MIT 9313]
          Length = 455

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + S +             ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD 
Sbjct: 156 DLLDRVLSLLPPKHEEPEEDEPIQMAIIGRPNVGKSSLLNAICGEPRAIVSPIRGTTRDT 215

Query: 258 LTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +   L+ EG+  ++ DTAGI   R  +   E  GI R+F  +E +D+ +L+ +       
Sbjct: 216 IDTRLEREGHPWRLIDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTE 275

Query: 309 -NSKKEISFPKNIDFI-FIGTKSDLYST 334
            + +       +      +  K D    
Sbjct: 276 QDQRLAGRIEDDGRACVLVVNKWDAVEK 303



 Score = 90.7 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 19/175 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVDDKPGVTRDRTYQDGFWGDREFKVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           D     E  ++  L +  A + L++ +          S  E    +    +    K +  
Sbjct: 66  DSEFLPEIREQANLALAEASVALVIVDGQQGVTAADESIAEWLRTQPCPTLVAVNKCESP 125

Query: 333 ST----------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                               IS+  G G  +L++++ S+L  K ++     P   
Sbjct: 126 DQGLAMAAEFWRLGLGEPFPISAIHGAGTGDLLDRVLSLLPPKHEEPEEDEPIQM 180


>gi|189500937|ref|YP_001960407.1| GTP-binding protein EngA [Chlorobium phaeobacteroides BS1]
 gi|238692267|sp|B3EMI7|DER_CHLPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189496378|gb|ACE04926.1| small GTP-binding protein [Chlorobium phaeobacteroides BS1]
          Length = 435

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 71/164 (43%), Gaps = 12/164 (7%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             F S    N +  L +++ +     +  E      K+ I+G  N GKSS  NAL   + 
Sbjct: 142 PWFISAREGNGVADLLDEVVASFPD-ETTEEEDTAIKLAIIGRPNVGKSSFVNALLGTNR 200

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADL 301
            IV+DIPGTTRD +   L   G  V + DTAG+R+    D  +E     RT   +E  D+
Sbjct: 201 HIVSDIPGTTRDAIDSRLKRNGKEVLLIDTAGLRKRTKIDRGIEFYSSVRTDKSIERCDV 260

Query: 302 ILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTE 337
            LLL +     E        ++  K    + +  K DL    T 
Sbjct: 261 ALLLIDAEQGLEKQDIKIIQMAAEKRKGIVILVNKWDLIEKETN 304



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 70/172 (40%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L++   AI    PG TRD      + +G    + DT G     
Sbjct: 5   VALVGRPNVGKSTLFNRLSRSKSAITDSTPGVTRDRHIASAEWQGRKFMVMDTGGYCHDK 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----------KNIDFIFIGTKSDL 331
           D + +  +++T   +  AD+IL + ++ S                 ++     +  K + 
Sbjct: 65  DSLNRAMMEQTLAAIAEADVILFMVDVRSGLAYLDLDMSRMLKKNFRDKPVYLVVNKVET 124

Query: 332 YSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                E  +           IS+  G G+ +L++++ +   ++  +   +  
Sbjct: 125 RQLAFEGEEFRRTGLTEPWFISAREGNGVADLLDEVVASFPDETTEEEDTAI 176


>gi|315225621|ref|ZP_07867430.1| ribosome-associated GTPase EngA [Capnocytophaga ochracea F0287]
 gi|314944438|gb|EFS96478.1| ribosome-associated GTPase EngA [Capnocytophaga ochracea F0287]
          Length = 434

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 12/163 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +D+ + +   +  E      +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD 
Sbjct: 154 ELLDDLVALLPVKEQQEEDTL-PRFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR    +    E   + R+   +E++D+ +L+ +     E 
Sbjct: 213 IDTKYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSIRAIEHSDVCILMLDATRGFES 272

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
                  ++       + +  K DL            ++   E
Sbjct: 273 QDANIFWLAQRNRKGIVILVNKWDLVEKENNTAKQYEAAIRKE 315



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L K+  AIV  + G TRD      D  G    + DT G +   
Sbjct: 5   VAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVSFSVIDTGGYLAGG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS--- 329
           DD  EKE  K+  L ++ AD I+ +  +         S  E+        +    K    
Sbjct: 65  DDSFEKEINKQVALAIDEADAIIFMVNVEEGLTGMDESVAELLRKCRKPILVAVNKVDSN 124

Query: 330 ----DLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               D++  Y   ++HL   SS  G G  EL++ + ++L  K ++   ++P
Sbjct: 125 NRRNDMHEFYALGFEHLYALSSVNGSGTGELLDDLVALLPVKEQQEEDTLP 175


>gi|161507460|ref|YP_001577414.1| GTP-binding protein EngA [Lactobacillus helveticus DPC 4571]
 gi|260101628|ref|ZP_05751865.1| ribosome-associated GTPase EngA [Lactobacillus helveticus DSM
           20075]
 gi|172048280|sp|A8YV35|DER_LACH4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|160348449|gb|ABX27123.1| phosphoglycerate dehydrogenase [Lactobacillus helveticus DPC 4571]
 gi|260084561|gb|EEW68681.1| ribosome-associated GTPase EngA [Lactobacillus helveticus DSM
           20075]
          Length = 435

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 115/293 (39%), Gaps = 49/293 (16%)

Query: 131 LADLISSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIR-------SFIEADLDFSEEE 182
           + + I ++ E+    + +  M   + +      +++ H+               D  E+ 
Sbjct: 68  IEEEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIAHLLYRTKKPVILAVNKADNPEQR 127

Query: 183 DVQNFSSKEVLNDIL-----------FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           +         L D +            L ++I S     K  +   +     ++G  N G
Sbjct: 128 NDIYDFYSLGLGDPIPVSSSHGTGIGDLLDEIVSDFPAEKDSQA-NDVISFSVIGRPNVG 186

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEG 288
           KSS+ N L  +D  IV +  GTTRD +      +G   K+ DTAGIR    +    EK  
Sbjct: 187 KSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGVKFKVVDTAGIRRRGKVYEKTEKYS 246

Query: 289 IKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY---STYTE 337
           + R    +E +D++LL+ + ++            +       I +  K DL    ST  +
Sbjct: 247 VLRAVAAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLPKKNSTSAK 306

Query: 338 EYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           E++                 +S+ TG+ L+++ + +K +  N+ +++  S+ +
Sbjct: 307 EFEREIRAEFQYLDYAPILFVSAKTGQRLDQIPSMVKEVYDNQNQRIQSSVLN 359



 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD      +  G+   + DT GI    
Sbjct: 6   VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
             +E+E   +  + +E AD+I++       + +++ +   + +      I    K+D   
Sbjct: 66  GKIEEEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIAHLLYRTKKPVILAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G+ +L+++I S    +       + 
Sbjct: 126 QRNDIYDFYSLGLGDPIPVSSSHGTGIGDLLDEIVSDFPAEKDSQANDVI 175


>gi|225848630|ref|YP_002728793.1| GTP-binding protein EngA [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644538|gb|ACN99588.1| ribosome-associated GTPase EngA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 443

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 105/277 (37%), Gaps = 45/277 (16%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL-----------FLKND 202
           L       + +           +D  E+E +     +    D++            L + 
Sbjct: 98  LDKEIATLLHRTEKPVIVAVNKIDDPEKEKLAYEFYELGFQDVIPISTIQKLGIADLLDK 157

Query: 203 ISSHISQGKLGEIIR------NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           I  +I   +            +  K+ I+G  NAGKSSL NA+  ++  +V+DIPGTTRD
Sbjct: 158 IYEYIPDYEKEVEYEEEEEEKDYIKVAIVGKPNAGKSSLLNAILNEERVLVSDIPGTTRD 217

Query: 257 VLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI----- 308
            +    + +       DTAGIR+    +  VE   + R+   +E AD+++L+ +      
Sbjct: 218 TVDTLFEKDSQRFLFLDTAGIRKRSKVEYGVEFFSVGRSIEAIEKADVVVLVIDAIIGAT 277

Query: 309 ---NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI----------------SSFTGE 349
                   +   +    + +  K D+      E                     S++   
Sbjct: 278 EQDQKIAGLIQRRYKPAVIVINKIDMLKEKDIEKVIRQVKEKLYFLDYAPIVLTSAYKKI 337

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQ 385
           G+EEL+N+I  + +  +K++     +   + +  L Q
Sbjct: 338 GIEELLNQIVKVYNQVWKRVSTGQLNRALKQITSLRQ 374



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 18/163 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IR 278
           +++ I+G  N GKSSLFN L  K  AIV DIPG TRD +    +  G   ++ DT G I 
Sbjct: 2   FRVAIVGRPNVGKSSLFNRLIGKRKAIVEDIPGVTRDRIISQTEWRGVKFEVVDTGGYIT 61

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKNI---DFIFIGTKSD 330
             +D       K+   E++ ADL++ + +         KEI+   +      I    K D
Sbjct: 62  SDEDKFAPYIRKQVEKELQEADLLVFVVDGKQGLTPLDKEIATLLHRTEKPVIVAVNKID 121

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
                   Y+           IS+    G+ +L++KI   + +
Sbjct: 122 DPEKEKLAYEFYELGFQDVIPISTIQKLGIADLLDKIYEYIPD 164


>gi|167947906|ref|ZP_02534980.1| tRNA modification GTPase TrmE [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 102

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/93 (47%), Positives = 62/93 (66%), Gaps = 1/93 (1%)

Query: 53  FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
           F   DG ++D G+L+ FP+P SFTGED  EF  HGG  +++ +L+ +  +  +R A  GE
Sbjct: 1   FHDQDGSVIDTGILLYFPAPHSFTGEDVLEFQAHGGAVILDLLLQRILDL-GIRPARAGE 59

Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRL 145
           F+ RAF NGKIDL +AE++ADLI + T    RL
Sbjct: 60  FTERAFLNGKIDLAQAEAVADLIEARTVSAARL 92


>gi|53715371|ref|YP_101363.1| GTP-binding protein EngA [Bacteroides fragilis YCH46]
 gi|60683339|ref|YP_213483.1| GTP-binding protein EngA [Bacteroides fragilis NCTC 9343]
 gi|255011702|ref|ZP_05283828.1| GTP-binding protein EngA [Bacteroides fragilis 3_1_12]
 gi|265767858|ref|ZP_06095390.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_16]
 gi|313149536|ref|ZP_07811729.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|81313609|sp|Q5L8K8|DER_BACFN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|81824906|sp|Q64NV3|DER_BACFR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|52218236|dbj|BAD50829.1| putative phosphoglycerate dehydrogenase [Bacteroides fragilis
           YCH46]
 gi|60494773|emb|CAH09579.1| putative GTP-binding protein [Bacteroides fragilis NCTC 9343]
 gi|263252530|gb|EEZ24058.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_16]
 gi|301164828|emb|CBW24388.1| putative GTP-binding protein [Bacteroides fragilis 638R]
 gi|313138303|gb|EFR55663.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 437

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV D  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNDEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +DDI E+E  K+  + V+ AD+IL + ++ +           I        I +  K+
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDVTNGVTDLDMQVAAILRRAKSPVIMVANKT 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D   L     E Y       + IS+ +G G  +L++ I S    +  ++
Sbjct: 122 DNHELRYNAPEFYRLGLGDPYCISAISGSGTGDLMDLIVSKFKKESDEI 170



 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 31/225 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I S   +     +  +  +  ++G  NAGKSS+ NA   ++  IVT+I GTTRD 
Sbjct: 154 DLMDLIVSKFKKESDEILDEDIPRFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR+ + +    E   + R+   +E AD+ +L+ +     E 
Sbjct: 214 IYTRYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVVRSIRAIEGADVCILMVDATRGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL--SN 364
                  +    +   + +  K DL    T++            ++     I+S      
Sbjct: 274 QDLNIFSLIQKNSKGLVVVVNKWDLVENKTDKV-----------MKTFEEAIRSRFAPFV 322

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEM-------ASLNEKDCGL 402
            F  +  S  + +R L  L +  +  E        A LNE+   L
Sbjct: 323 DFPIVFASALTKQRILKVLEEARKVYENRMIKIPTARLNEEMLPL 367


>gi|71274603|ref|ZP_00650891.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa
           Dixon]
 gi|71900907|ref|ZP_00683022.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa
           Ann-1]
 gi|170730865|ref|YP_001776298.1| GTP-binding protein EngA [Xylella fastidiosa M12]
 gi|238687938|sp|B0U489|DER_XYLFM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|71164335|gb|EAO14049.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa
           Dixon]
 gi|71729319|gb|EAO31435.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa
           Ann-1]
 gi|167965658|gb|ACA12668.1| GTP-binding protein [Xylella fastidiosa M12]
          Length = 465

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 99/267 (37%), Gaps = 41/267 (15%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF-----------SSKEVLND 195
           +   +  L      W+ KL+     +   +D   +  V +             S      
Sbjct: 92  VREGASALDDDILAWLRKLSQPTLLVINKIDGVSDTTVHSEFAHYGFSDVVPVSAAHRQG 151

Query: 196 ILFLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  L   + + + +  +GE +        I  +G  N GKS+L N L  ++  IV+D+PG
Sbjct: 152 LDDLIEQVLAWLPERSIGEALNEDSERIHIAFVGRPNVGKSTLVNRLLGEERMIVSDVPG 211

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN 309
           TTRD +T+DL+ + +  ++ DTAG+R     ++ VEK    +T   +E   + +LL +  
Sbjct: 212 TTRDSITVDLERDEFRYRLVDTAGLRRKSKVEEAVEKFSAFKTLQAIEQCQVAVLLLDAG 271

Query: 310 SK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISS 345
                                +    K D  +TY  E                    +S+
Sbjct: 272 EGVTDQDATVLAAILDAGKALVVAMNKWDGLATYQREQAEDLLSRKLGFVNWAEVVRLSA 331

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS 372
             G GL EL   I     +  ++   S
Sbjct: 332 KHGSGLRELFRAIHRAHVSALRQFSTS 358



 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280
           + ++G  N GKS+LFNAL     A+V D PG TRD       ++G     + DT G+   
Sbjct: 5   VALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGGMVGK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDLY 332
           +D +     ++  L    AD++L +  +           +++ +      + +  K D  
Sbjct: 65  EDGLAGATARQARLAAAEADVVLFVVNVREGASALDDDILAWLRKLSQPTLLVINKIDGV 124

Query: 333 STYT--EEYDHL-------ISSFTGEGLEELINKIKSILSNK 365
           S  T   E+ H        +S+   +GL++LI ++ + L  +
Sbjct: 125 SDTTVHSEFAHYGFSDVVPVSAAHRQGLDDLIEQVLAWLPER 166


>gi|330874711|gb|EGH08860.1| GTP-binding protein Der [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 440

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   I    EK  + +T   +++A++++ + +               +       +  
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D  +    ++                 H IS+  G G+  L   +++   +   + 
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLFFVDFADIHFISAMHGTGVGNLYQSVQNSFKSAVTRW 372

Query: 370 PFS 372
           P S
Sbjct: 373 PTS 375



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ L +E AD++L L +  +          E    +N     +  K D
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKID 121


>gi|148979611|ref|ZP_01815616.1| GTP-binding protein EngA [Vibrionales bacterium SWAT-3]
 gi|145961696|gb|EDK26993.1| GTP-binding protein EngA [Vibrionales bacterium SWAT-3]
          Length = 493

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 100/239 (41%), Gaps = 30/239 (12%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L  +     A+   +E+  + + +      D    + D +   ++ +   +     K+ I
Sbjct: 154 LIDLALNPFAEALKAEQGKISDLTE---FEDEEAEQVDFTEEEAEQEFKRLQDQPIKLAI 210

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R   +I 
Sbjct: 211 IGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMSRDEREYVLIDTAGVRRRKNIN 270

Query: 285 ---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKS---- 329
              EK  + +T   VE+A+++LL+ +     S +++S            +    K     
Sbjct: 271 ETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVIAVNKWDGLD 330

Query: 330 -DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            D+     +E D           H IS+  G G+  L   ++    +   ++  S+ + 
Sbjct: 331 NDVKERVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYKSATTRVGTSVLTR 389



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAQLGEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +     +++  K+        + +  K D   
Sbjct: 65  EGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDVAIAKHLRQLEKPSMLVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELIN 356
                 D            ++  G G+  LI+
Sbjct: 125 PDAASADFWQLGVEDMYQIAAAHGRGVTALID 156


>gi|160882378|ref|ZP_02063381.1| hypothetical protein BACOVA_00327 [Bacteroides ovatus ATCC 8483]
 gi|237719052|ref|ZP_04549533.1| GTP-binding protein EngA [Bacteroides sp. 2_2_4]
 gi|260172013|ref|ZP_05758425.1| GTP-binding protein EngA [Bacteroides sp. D2]
 gi|299148136|ref|ZP_07041198.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_23]
 gi|315920326|ref|ZP_07916566.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156112191|gb|EDO13936.1| hypothetical protein BACOVA_00327 [Bacteroides ovatus ATCC 8483]
 gi|229451431|gb|EEO57222.1| GTP-binding protein EngA [Bacteroides sp. 2_2_4]
 gi|298512897|gb|EFI36784.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_23]
 gi|313694201|gb|EFS31036.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 437

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +DD+ E+E  K+  L VE AD+IL + ++ +           I    N   I +  K+
Sbjct: 62  VNSDDVFEEEIRKQVLLAVEEADVILFVVDVMNGVTDLDMQVAAILRRANSPVIMVANKT 121

Query: 330 DLYS---------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D +                 + +S+ TG G  +L++ I S    +  ++
Sbjct: 122 DNHDLQYNAPEFYKLGLGDPYCVSAMTGSGTGDLMDLIVSNFKKESSEI 170



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I S+  +     +  +  +  ++G  NAGKSS+ NA   ++  IVT+I GTTRD 
Sbjct: 154 DLMDLIVSNFKKESSEILDDDIPRFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR+ + +    E   + R+   +E +D+ +L+ +     E 
Sbjct: 214 IYTRYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVVRSIRSIEGSDVCILMLDATRGVEG 273

Query: 314 -------ISFPKNIDFIFIGTKSDL-------------------YSTYTEEYDHLISSFT 347
                  +        + +  K DL                   ++ + +      S+ T
Sbjct: 274 QDLNIFSLIQKNQKGLVVVINKWDLVEDKSVKVQKAFEEAVRSRFAPFVDFPIIFASALT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + +++ + +S+  N+  K+P +
Sbjct: 334 KQRILKVLEEARSVYENRTTKIPTA 358


>gi|89890093|ref|ZP_01201604.1| GTPase [Flavobacteria bacterium BBFL7]
 gi|89518366|gb|EAS21022.1| GTPase [Flavobacteria bacterium BBFL7]
          Length = 433

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 12/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I   +    + E   +  +  ++G  NAGKSS  NAL  ++  IVTDI GTTRD 
Sbjct: 153 DLLDRIVELLPDTPVRE-DSDLPRFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDS 211

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR    +    E   + R+   +E+AD+ +L+ +     + 
Sbjct: 212 IDTKYNRFGFEFNLVDTAGIRRKKKVKEDLEFYSVMRSVRAIEHADVCILILDATRGFDG 271

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTE 337
                  ++       + +  K DL    T 
Sbjct: 272 QVQNIFWLAERNRKGIVVLVNKWDLVDKETN 302



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++  AI   + G TRD      D  G    + DT G +  +
Sbjct: 4   VAIVGRPNVGKSTLFNRLIQRREAITDAVSGVTRDRHYGKSDWNGKEFSVIDTGGYVVGS 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DD+ E E   +  L ++ AD+I+ + +  S          ++        I    K D  
Sbjct: 64  DDVFEAEIDHQVELAIDEADVIVFMVDAESGITGMDEDVAKLLRKVKKPVILAVNKVDNP 123

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               + Y+            SS +G G  +L+++I  +L +   +    +P
Sbjct: 124 QREQDAYEFYNLGLSEYFTLSSTSGSGTGDLLDRIVELLPDTPVREDSDLP 174


>gi|148653556|ref|YP_001280649.1| GTP-binding protein EngA [Psychrobacter sp. PRwf-1]
 gi|172048545|sp|A5WGA8|DER_PSYWF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|148572640|gb|ABQ94699.1| small GTP-binding protein [Psychrobacter sp. PRwf-1]
          Length = 473

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 19/222 (8%)

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
            ++ A +I ++ E+ + L      G+   L    ID +          L   E   +   
Sbjct: 94  VDARAGMIGADAEIGKML---HTLGKPVYLVANKIDGVHDAAPAEFYALGLGEPYPMTAS 150

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             + + N +  L  D+   + +   G     G K+ I+G  N GKS+L N +  ++  +V
Sbjct: 151 HGRGIANLLDDLTADMPEDVEEEDQG-----GLKLAIIGRPNVGKSTLVNRMLGEERVVV 205

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILL 304
            D+PGTTRD + I  +  G    + DTAG+R     D+ VEK  + +    +++A++++ 
Sbjct: 206 YDMPGTTRDSIYIPFERNGKNYVLIDTAGVRRRGRIDEKVEKFSVIKALQAIKDANVVVA 265

Query: 305 LKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEE 338
           + +       +++     +       +    K D  S   +E
Sbjct: 266 VIDAQEGIVDQDLHMLGYALDAGRAMVVAINKWDGLSEDKKE 307



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 69/170 (40%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN + K   A+V D+ G TRD    D         + DT GI E D
Sbjct: 7   VALIGRPNVGKSTIFNQMTKTRQALVADLSGLTRDRQYGDATYNNKSFVVIDTGGIGEAD 66

Query: 282 DIV---EKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSD 330
           D     +     ++   +  AD+++ + +     I +  EI             +  K D
Sbjct: 67  DGRGSIDDYMSAQSHTAIHEADILVFVVDARAGMIGADAEIGKMLHTLGKPVYLVANKID 126

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            ++     E+        + +++  G G+  L++ + + +    ++    
Sbjct: 127 GVHDAAPAEFYALGLGEPYPMTASHGRGIANLLDDLTADMPEDVEEEDQG 176


>gi|301312102|ref|ZP_07218024.1| ribosome-associated GTPase EngA [Bacteroides sp. 20_3]
 gi|300830204|gb|EFK60852.1| ribosome-associated GTPase EngA [Bacteroides sp. 20_3]
          Length = 437

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 18/163 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L     AIV +  GTTRD     ++  G    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
             ++D+ E+E  K+  + +E AD+IL + ++            +I        I +  K+
Sbjct: 62  VNSEDVFEEEINKQVKVAIEEADVILFVVDVLNGITDLDMEVAQILRRCKRPVIVVANKA 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILS 363
           D   L+    E Y         IS+  G    +L++KI + L 
Sbjct: 122 DNYELHPASAEFYSFGLGDPFCISAINGSYTGDLLDKIVATLP 164



 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 11/170 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I + + + K+  +     +I I+G  NAGKSSL NA   +D  IVTDI GTTRD 
Sbjct: 154 DLLDKIVATLPEEKVEILEEELPRIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G    + DTAGIR+   +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTKYNKFGLNFYLVDTAGIRKKGKVNEDLEYYSVIRSIRAIENSDVCVLMLDATRGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  +        +    K DL    +++     ++   E L    +
Sbjct: 274 QDMNIFSLVQKNKKGLVVCVNKWDLIEDKSQKVIDSYTTAIRERLAPFTD 323


>gi|300717947|ref|YP_003742750.1| GTP-binding protein [Erwinia billingiae Eb661]
 gi|299063783|emb|CAX60903.1| GTP-binding protein [Erwinia billingiae Eb661]
          Length = 495

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 38/208 (18%)

Query: 207 ISQGKLGEI-----------IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +   + GEI           +    K+ I+G  N GKS+L N +  +D  +V D PGTTR
Sbjct: 185 LEAAEQGEIEAAEAEDNFNPLDLPIKLAIVGRPNVGKSTLTNRILGEDRVVVFDAPGTTR 244

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEIN--- 309
           D + I ++ +G    + DTAG+R+     + VEK  + +T   +E+A++++L+ +     
Sbjct: 245 DSIYIPMERDGREYILIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVMLVIDAREGI 304

Query: 310 SKKEISFP-----KNIDFIFIGTKSD-LYSTYTEEY---------------DHLISSFTG 348
           S +++S            + +  K D L     +E                 H IS+  G
Sbjct: 305 SDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVRDEVKETLDFRLGFIDFARVHFISALHG 364

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSH 376
            G+  L   +        +++  S+ + 
Sbjct: 365 SGVGNLFESVTEAYDCSTRRVNTSMLTR 392



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 26/206 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD      ++EG      DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGQQFICIDTGGIDGNE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE     ++ L +E AD++L + +  +     +I+  ++          +  K+D   
Sbjct: 65  EGVETRMAAQSLLAIEEADVVLFMVDARAGLMPADIAIAQHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH-- 382
             +   D         H I++  G G+  L   ++ +L    + +  S P  +       
Sbjct: 125 PDSAVVDFYSLGLGEIHAIAASHGRGVASL---LEDVLEPYREVVEESAPLTEEEENAAY 181

Query: 383 ---LSQTVR-YLEMASLNEKDCGLDI 404
              L    +  +E A   +    LD+
Sbjct: 182 WADLEAAEQGEIEAAEAEDNFNPLDL 207


>gi|218245012|ref|YP_002370383.1| GTP-binding protein EngA [Cyanothece sp. PCC 8801]
 gi|257058036|ref|YP_003135924.1| GTP-binding protein EngA [Cyanothece sp. PCC 8802]
 gi|226741133|sp|B7K1S0|DER_CYAP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|218165490|gb|ACK64227.1| small GTP-binding protein [Cyanothece sp. PCC 8801]
 gi|256588202|gb|ACU99088.1| small GTP-binding protein [Cyanothece sp. PCC 8802]
          Length = 452

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 14/149 (9%)

Query: 198 FLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L +D+ +++   +  EI + +  K+ I+G  N GKSSL NAL  ++ AIV+ I GTTRD
Sbjct: 156 ELLDDLITYLPPPE--EITQSDEIKVAIIGRPNVGKSSLLNALLGENRAIVSPISGTTRD 213

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINS--- 310
            +   +       ++ DTAGIR   ++    E   I R F  +   D++L + +      
Sbjct: 214 AIDTVIQHNEQTYRLIDTAGIRRKKNVEYGAEFFSINRAFKAIRRCDVVLFVIDAIDGVT 273

Query: 311 KKEISFP-----KNIDFIFIGTKSDLYST 334
            +++        +    + +  K D    
Sbjct: 274 DQDLKLADRIIEEGRSVVLVINKWDAVDK 302



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LA    AIV D PG TRD        +    +I DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLANRLAGDQHAIVHDEPGITRDRTYRPGFWQDRDFQIVDTGGLVFDD 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIG--TKSDLY 332
           D        +++   +  A   + + +          +   + +      +    K +  
Sbjct: 66  DTEFLPLIREQSLAALNEASAAIFVVDGQTGPTTGDLEIADWLRQQPVPVLLAVNKCESP 125

Query: 333 S----------TYTEEYDHLISSFTGEGLEELINKIKSILS 363
                             + IS   G G  EL++ + + L 
Sbjct: 126 ELGLIQATQFWELGLGNPYPISGIHGNGTGELLDDLITYLP 166


>gi|329725422|gb|EGG61905.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU144]
          Length = 436

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  + ++        +  ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD 
Sbjct: 154 DLLDAVVENFNKESEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   +G    + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 IDTEYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSEVVLVVIDAEQGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEEGKAIVIVVNKWDTVEK 301



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + +E AD+I+ +  +            ++ +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIEEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNLE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK 368
              + YD           IS   G GL +L++ +    + + + 
Sbjct: 126 MRNDIYDFYSLGFGDPYPISGSHGLGLGDLLDAVVENFNKESED 169


>gi|262383937|ref|ZP_06077073.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_33B]
 gi|262294835|gb|EEY82767.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_33B]
          Length = 437

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 18/163 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L     AIV +  GTTRD     ++  G    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
             ++D+ E+E  K+  + +E AD+IL + ++            +I        I +  K+
Sbjct: 62  VNSEDVFEEEINKQVKVAIEEADVILFVVDVLNGITDLDMEVAQILRRCKRPVIVVANKA 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILS 363
           D   L+    E Y         IS+  G    +L++KI + L 
Sbjct: 122 DNYELHPASAEFYSFGLGDPFCISAINGSYTGDLLDKIVATLP 164



 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I + + + K+  +     +I I+G  NAGKSSL NA   +D  IVTDI GTTRD 
Sbjct: 154 DLLDKIVATLPEEKVEILEEELPRIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G    + DTAGIR+   +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTKYNKFGLNFYLVDTAGIRKKGKVNEDLEYYSVIRSIRAIENSDVCVLMLDATRGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYST-------------------YTEEYDHLISSFT 347
                  +        +    K DL                      +T+     IS+ T
Sbjct: 274 QDMNIFSLVQKNKKGLVVCVNKWDLVEDKSQKVIDSYTTAIRERLAPFTDFPILFISAMT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + +++   K +  N+ K++P +
Sbjct: 334 KQRILKVLETAKEVYENRSKRVPTA 358


>gi|331658656|ref|ZP_08359600.1| ribosome-associated GTPase EngA [Escherichia coli TA206]
 gi|331054321|gb|EGI26348.1| ribosome-associated GTPase EngA [Escherichia coli TA206]
          Length = 396

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 27/170 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 216 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 275

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 276 RGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 335

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSIL 362
            D  S   +E                  H IS+  G G+  L   ++   
Sbjct: 336 WDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAY 385



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 8   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 67

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  S     + +  K+         
Sbjct: 68  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARSGLMPADEAIAKHLRSREKPTF 127

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 128 LVANKTDGLDPDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV 171


>gi|319941508|ref|ZP_08015835.1| GTP-binding protein engA [Sutterella wadsworthensis 3_1_45B]
 gi|319804982|gb|EFW01821.1| GTP-binding protein engA [Sutterella wadsworthensis 3_1_45B]
          Length = 451

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 27/179 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ + G  NAGKS+L NAL  ++  I  D+PGTTRD + ID + +G   ++ DTAG+R+
Sbjct: 183 IKVTLAGRPNAGKSTLINALVGEERVIAFDMPGTTRDAIKIDFEYDGRPYELVDTAGLRK 242

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              +    EK  + +T   +E+A++++L+ +                       +    K
Sbjct: 243 KGRVFEAVEKFSVVKTLQAIEDANVVILVVDAKEGVSEGDAHIAGYVLEAGRALVVAVNK 302

Query: 329 SDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            DL  +Y  E                    IS+    GL  L+  +    +  + KLP 
Sbjct: 303 WDLLDSYERERFNLDLERKLHFLRWARMIRISALKRNGLNHLMRAVDEAHAAAYAKLPT 361



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 17/162 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+ FN L +   AIV D PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTFFNRLTRSRDAIVADFPGLTRDRQYGQGRVGPGPYIVVDTGGFEPVR 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTKSD-L 331
            + + +    +  L +E AD++L L +  +    ++I   +     +   + +  K++ L
Sbjct: 65  TEGIVQAMAGQAELAIEEADVVLFLTDARAGLTPQDIRIAQHLRRADRPVVLLVNKAEGL 124

Query: 332 YSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKF 366
             T   E+        HL+S   G+G+ + ++   S L   F
Sbjct: 125 TETAKAEFYELGLGEPHLVSGAHGQGVRDALDLAFSCLPEDF 166


>gi|156741277|ref|YP_001431406.1| GTP-binding protein Era [Roseiflexus castenholzii DSM 13941]
 gi|156232605|gb|ABU57388.1| GTP-binding protein Era [Roseiflexus castenholzii DSM 13941]
          Length = 449

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 21/192 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL  + VAIV+  P TTR  +   L      +   DT G
Sbjct: 160 RSGF-VALVGRPNVGKSTLLNALLGQKVAIVSPKPQTTRTAIRGILTRPDAQIVFVDTPG 218

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
           I E  + +    +K+    + +AD++ ++ +I             +    +   I +  K
Sbjct: 219 IHEPRNRLGAYMVKQARRAIPDADVVCMVVDITRPPGSLDERIAALVRKASARRILVLNK 278

Query: 329 SDLYSTYTEEY------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            DL +    +             +  +S+  G GL+ L+++I  +L       P    + 
Sbjct: 279 IDLRTKRGSDNLQAYRALAPWDMEVAVSALRGHGLDALVDEIVRLLPEGPPLYPEGQVTD 338

Query: 377 KRHLYHLSQTVR 388
                  ++ VR
Sbjct: 339 LSEREIAAELVR 350


>gi|332534677|ref|ZP_08410508.1| GTP-binding protein EngA [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035889|gb|EGI72371.1| GTP-binding protein EngA [Pseudoalteromonas haloplanktis ANT/505]
          Length = 476

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 36/248 (14%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE--------I 215
           ++ HI +     +    E+ +Q     E+      +  D    I   + GE         
Sbjct: 127 EIHHIAAAHGRGITLLLEQTLQPL-IAELAAQDEEVTGDDEELIDLYEEGEGDDTDHQAF 185

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
                K+ I+G  N GKS+L N +  +D  IV D+PGTTRD + I +        + DTA
Sbjct: 186 ADKPVKLAIIGRPNVGKSTLTNRILGEDRVIVYDMPGTTRDSIYIPMTRNDKEYVLIDTA 245

Query: 276 GIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIF 324
           G+R+     D+VEK  + +T   +E+ +++LL+ +     S +++S            + 
Sbjct: 246 GVRKRKKVSDVVEKFSVIKTLQAIEDCNVVLLVVDARDGISDQDLSLLGFALNSGRSLVI 305

Query: 325 IGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKK 368
              K D    Y ++                  H IS+  G G+  L   +     +  K+
Sbjct: 306 AVNKWDGLDDYVKDRIKTELDRRLGFIDFARLHFISALHGTGVGHLFESVDEAYESATKR 365

Query: 369 LPFSIPSH 376
           +  ++   
Sbjct: 366 ISTAMLRR 373



 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 17/170 (10%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKS+LFN L +   A+V D PG TRD        +GY   + DT GI  +++ +E E   
Sbjct: 2   GKSTLFNRLTRTRDALVADFPGLTRDRKYGQASYDGYEFIVVDTGGIDGSEEGIEIEMAD 61

Query: 291 RTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYST-------- 334
           ++ L +E AD++L L +       + + I+     +      +  K+D            
Sbjct: 62  QSLLAIEEADIVLFLVDARVGMTVADQAIANHLRKQEKKCFVVANKTDGIDADSNCAEFY 121

Query: 335 -YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
             +    H I++  G G+  L+ +    L  +       +      L  L
Sbjct: 122 QLSLGEIHHIAAAHGRGITLLLEQTLQPLIAELAAQDEEVTGDDEELIDL 171


>gi|315646409|ref|ZP_07899527.1| GTP-binding protein EngA [Paenibacillus vortex V453]
 gi|315278052|gb|EFU41372.1| GTP-binding protein EngA [Paenibacillus vortex V453]
          Length = 440

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  ++ + +      +  ++ ++G  N GKSSL NA+  ++  IV+D+ GTTRD 
Sbjct: 155 DLLDVVVENLPELEDDGYDEDVIRVALIGRPNVGKSSLVNAILGEERVIVSDVAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    + +G    + DTAG+R+   +    EK  + R    +E AD++L+L  IN ++ I
Sbjct: 215 IDTPFEKDGQRYVLIDTAGMRKRGKVYETTEKYSVMRAMRAIERADVVLVL--INGEEGI 272

Query: 315 ----------SFPKNIDFIFIGTKSDLYSTYTE 337
                     ++      +F+  K D+     +
Sbjct: 273 IEQDKHIAGYAYEAGKASLFVVNKWDMVEKEDK 305



 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS++FN L    +AIV D PG TRD +    +  G    + DT GI  + 
Sbjct: 6   VAIVGRPNVGKSTIFNRLIGDRLAIVEDKPGITRDRIYGSAEWNGKAFSVIDTGGIEIDG 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DD++ K    +  L +E AD+I+ + +  +          +I F      I    K D  
Sbjct: 66  DDMILKSIRMQAELAIEEADVIVFMCDAKAGVTQSDEEVAQILFRSGKPVILSVNKVDNL 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
               + Y+           IS   G G+ +L++ +   L  
Sbjct: 126 KRVDDIYEFYSLGFGDPVGISGSHGTGIGDLLDVVVENLPE 166


>gi|90417497|ref|ZP_01225420.1| hypothetical protein GB2207_07462 [marine gamma proteobacterium
           HTCC2207]
 gi|90330738|gb|EAS46017.1| hypothetical protein GB2207_07462 [marine gamma proteobacterium
           HTCC2207]
          Length = 467

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 27/182 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG +I ++G  N GKS+L N L  +D  +V D  GTTRD + ID +  G    + DTAGI
Sbjct: 174 NGIRIGVVGRPNVGKSTLVNRLLGEDRVVVYDEAGTTRDSVYIDYERHGKKYTLIDTAGI 233

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIG 326
           R+  +I   +EK  I +T   +++A++++L+ + +    ++++             +   
Sbjct: 234 RKRKNIKLAIEKFSIVKTLQAIDDANVVVLMVDAHEGLVEQDLHLMGSVIDAGRGLVIGV 293

Query: 327 TKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            K D       E                  H IS+  G G+  L + I++        L 
Sbjct: 294 NKWDGLEPEKREKIKEDIKRRLRFAEFADVHYISAMHGTGVGNLYDSIENAYRAATDALS 353

Query: 371 FS 372
            S
Sbjct: 354 AS 355



 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 8/136 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V +  G TRD    D ++      + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVANYSGLTRDRKYGDGEMHDRRFMVIDTGGISGEE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + ++    +++ L ++ AD++L + +  S          E    KN     +  K D   
Sbjct: 65  EGIDVGMAEQSLLAMDEADIVLFIVDCRSGIIAADHMIAETLRKKNRKVYLVANKIDGLD 124

Query: 334 TYTEEYDHLISSFTGE 349
                 D     F+G 
Sbjct: 125 PAAALADFYQLGFSGM 140


>gi|319400824|gb|EFV89043.1| small GTP-binding domain protein [Staphylococcus epidermidis
           FRI909]
          Length = 436

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  + ++        +  ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD 
Sbjct: 154 DLLDAVVENFNKESEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   +G    + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 IDTEYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSEVVLVVIDAEQGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEEGKAIVIVVNKWDTVEK 301



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + +E AD+I+ +  +            ++ +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIEEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNLE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK 368
              + YD           IS   G GL +L++ +    + + + 
Sbjct: 126 MRNDIYDFYSLGFGDPYPISGSHGLGLGDLLDAVVENFNKESED 169


>gi|313675797|ref|YP_004053793.1| ribosome-associated GTPase enga [Marivirga tractuosa DSM 4126]
 gi|312942495|gb|ADR21685.1| ribosome-associated GTPase EngA [Marivirga tractuosa DSM 4126]
          Length = 435

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 11/160 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + + +   +    +      ++ ILG  NAGKSS  NAL   +  IVTDI GTTRD 
Sbjct: 154 EVLDAVVALFPEDDHKDPFEGVPRLAILGRPNAGKSSFLNALLGDERTIVTDIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +     L G    ++DTAG+R   +T D +E     R    ++++D+ +++ +     E 
Sbjct: 214 INTHYKLYGKDFILTDTAGLRKKTKTKDDIEFYSTIRAIQALQDSDVCIVMIDATRGFES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
                  ++       + +  K DL     + +D      
Sbjct: 274 QDMQIIGLAHKNKKGIMIMVNKWDLIEKDGKTHDKFKKEI 313



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 18/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AI+ +  G TRD    +    G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRLVERKQAIMDNESGVTRDRQYGEAQWIGKKFTVIDTGGYVTGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
           +DI EKE  K+    ++ A +IL + + ++           +          +  K+D  
Sbjct: 65  NDIFEKEIRKQVKEALKEATVILFMVDCHTGLTDMDKDFANVVREVGKPVFVVANKADNT 124

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             S    E+          +SS +G G  E+++ + ++      K PF     
Sbjct: 125 EKSYMAGEFYSMGFDEVFSMSSASGSGTGEVLDAVVALFPEDDHKDPFEGVPR 177


>gi|82703488|ref|YP_413054.1| GTP-binding protein EngA [Nitrosospira multiformis ATCC 25196]
 gi|123768150|sp|Q2Y6F9|DER_NITMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|82411553|gb|ABB75662.1| Small GTP-binding protein domain [Nitrosospira multiformis ATCC
           25196]
          Length = 466

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 104/298 (34%), Gaps = 47/298 (15%)

Query: 121 GKIDLLEAESLADLISSETEMQRRLS------MEGMSGEL-------SSLYGQWIDKLTH 167
           G  + +  E +   ++ +T      +      ++G SG           L       L  
Sbjct: 58  GGFEPMATEGILHEMAKQTLQAIDEADVVLFIVDGRSGLTAQDKIVAEQLRRSGRRTLLA 117

Query: 168 I-----RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS-SHISQGKLGEIIRNGYK 221
           +      +      +F E    +  +      D +     ++          E   +  K
Sbjct: 118 VNKTEGMAVSVVTAEFHELGLGEPCAISAAHGDNVNELVTLALQDFPDEPEQERKDDHPK 177

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           I I+G  N GKS+L N L  ++  I  D PGTTRD + ID +  G    + DTAG+R   
Sbjct: 178 IAIVGRPNVGKSTLVNTLLGEERVIAFDQPGTTRDSIYIDFERNGRTYTLIDTAGLRRRG 237

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSD 330
           +  + VEK  + +T   +E+A++++L+ +  S+                   +    K D
Sbjct: 238 KVQETVEKFSVVKTLQAIEDANVVILVLDAASEISDQDAHIGGFILEAGRALVLAVNKWD 297

Query: 331 LYSTYTEEYD-----------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
               Y  +                   H IS+  G G + L+  + +        LP 
Sbjct: 298 SLDEYQRDMIKRDINRKLPFLQNFARFHYISALHGTGTKGLLPSVDAAYGAAMAHLPT 355



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 18/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           +V++G SN GKS+LFN L +   A+V D+PG TRD       L      + DT G     
Sbjct: 5   LVLVGRSNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGHGKLGDRPYLVVDTGGFEPMA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            + +  E  K+T   ++ AD++L + +  S          E         +    K++  
Sbjct: 65  TEGILHEMAKQTLQAIDEADVVLFIVDGRSGLTAQDKIVAEQLRRSGRRTLLAVNKTEGM 124

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELI 355
             S  T E+          IS+  G+ + EL+
Sbjct: 125 AVSVVTAEFHELGLGEPCAISAAHGDNVNELV 156


>gi|225374467|ref|ZP_03751688.1| hypothetical protein ROSEINA2194_00082 [Roseburia inulinivorans DSM
           16841]
 gi|225213705|gb|EEG96059.1| hypothetical protein ROSEINA2194_00082 [Roseburia inulinivorans DSM
           16841]
          Length = 449

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++  +  + K  +   +  KI I+G  N GKSSL N LA++D  IV+DI GTTRD 
Sbjct: 163 DMLDEVVKYFPEYKKDDEEDDRPKIAIIGKPNVGKSSLINKLAQEDRVIVSDIAGTTRDA 222

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  D+   G      DTAG+R  +   + +E+  I R    VE AD+ +++ +       
Sbjct: 223 IDTDIKYNGKEYVFIDTAGLRRKNKIKEEIERYSIIRAVTAVERADVCIIVIDATEGVTE 282

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                  I+  +    I    K D    
Sbjct: 283 QDAKIAGIAHDRGKGIIIAVNKWDAIEK 310



 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 81/181 (44%), Gaps = 19/181 (10%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           + G +  +   + I+G  N GKS+LFNALA + ++IV D PG TRD +  ++    +   
Sbjct: 2   RKGVLSMSKPVVAIVGRPNVGKSTLFNALAGERISIVQDTPGVTRDRIYAEVSWLDHNFT 61

Query: 271 ISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NID 321
           + DT GI  +++DI+  +  ++  + +  AD+I+ + ++    + S  K           
Sbjct: 62  MIDTGGIEPDSNDIILSQMREQAEIAIATADVIMFIVDVRQGLQDSDSKVADMLRRSGKP 121

Query: 322 FIFIGTKSDLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            + +  K D +  Y  +              +S+ +  GL ++++++        K    
Sbjct: 122 VVLVVNKVDSFEKYMADVYEFYNLGIGDPFPVSAASMLGLGDMLDEVVKYFPEYKKDDEE 181

Query: 372 S 372
            
Sbjct: 182 D 182


>gi|87161650|ref|YP_494061.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|161509642|ref|YP_001575301.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294848438|ref|ZP_06789184.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9754]
 gi|123485886|sp|Q2FGW7|DER_STAA3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037166|sp|A8Z454|DER_STAAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|87127624|gb|ABD22138.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|160368451|gb|ABX29422.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294824464|gb|EFG40887.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9754]
 gi|315197778|gb|EFU28112.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320142720|gb|EFW34523.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 436

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + SH  + +      +  ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD 
Sbjct: 154 DLLDAVVSHFGEEEEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   +G    + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 IDTEYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEQGKAVVIVVNKWDTVEK 301



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + ++ A +I+ +  +            +I +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIDEAYVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNME 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             T+ YD           IS   G GL +L++ + S  
Sbjct: 126 MRTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVSHF 163


>gi|218896533|ref|YP_002444944.1| ribosome-associated GTPase EngA [Bacillus cereus G9842]
 gi|228900184|ref|ZP_04064416.1| GTP-binding protein engA [Bacillus thuringiensis IBL 4222]
 gi|228938715|ref|ZP_04101319.1| GTP-binding protein engA [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228964578|ref|ZP_04125687.1| GTP-binding protein engA [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228971597|ref|ZP_04132220.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978207|ref|ZP_04138584.1| GTP-binding protein engA [Bacillus thuringiensis Bt407]
 gi|226741129|sp|B7IP82|DER_BACC2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|218545843|gb|ACK98237.1| ribosome-associated GTPase EngA [Bacillus cereus G9842]
 gi|228781224|gb|EEM29425.1| GTP-binding protein engA [Bacillus thuringiensis Bt407]
 gi|228788120|gb|EEM36076.1| GTP-binding protein engA [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228795112|gb|EEM42609.1| GTP-binding protein engA [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228820956|gb|EEM66977.1| GTP-binding protein engA [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228859454|gb|EEN03882.1| GTP-binding protein engA [Bacillus thuringiensis IBL 4222]
 gi|326939221|gb|AEA15117.1| GTP-binding protein EngA [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 436

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++ ++H  + +         +  ++G  N GKSSL NAL  ++  IV++I GTTRD 
Sbjct: 154 DLLDEAANHFPKIEEEAYDDETIRFSLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +      +     I DTAG+R+   +    EK  + R    +E +D++L++ +     I 
Sbjct: 214 VDTPYSKDDQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIE 273

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST 334
             K+I   +       I +  K D    
Sbjct: 274 QDKKIAGYAHDSGRAVIIVVNKWDAVKK 301



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
             ++ YD           IS   G GL +L+++  +   
Sbjct: 126 MRSDIYDFYSLGFGEPFPISGTHGLGLGDLLDEAANHFP 164


>gi|302339695|ref|YP_003804901.1| ribosome-associated GTPase EngA [Spirochaeta smaragdinae DSM 11293]
 gi|301636880|gb|ADK82307.1| ribosome-associated GTPase EngA [Spirochaeta smaragdinae DSM 11293]
          Length = 453

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 29/198 (14%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           +  +   +         ++ +LG  N GKS+L N L  +DV+IV+D+PGTTRDV+     
Sbjct: 177 AQLLKSREAEAEDSFSLRLALLGKPNTGKSTLANRLIGRDVSIVSDLPGTTRDVVESSFS 236

Query: 264 LEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS 315
             G    I DTAGIR    +   +E   + R    +E A ++LL+ +         K+I+
Sbjct: 237 YRGMNCTILDTAGIRRKKKVGENIEYYSVNRALSAIEEAHVVLLMIDAQEGLSEQDKKIT 296

Query: 316 ---FPKNIDFIFIGTKSDLYSTYTEEYD------------------HLISSFTGEGLEEL 354
                +    + +  K DL                             IS+ TGEG+++L
Sbjct: 297 SQIIKRGRSVVMVLNKWDLLQEVPNMIQAISDRVRFLFPVLSFAPLVPISAKTGEGVDKL 356

Query: 355 INKIKSILSNKFKKLPFS 372
           ++ + ++     K++  S
Sbjct: 357 LSTVYAVRKQMSKRVDTS 374



 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 16/157 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +K  AI    PG TRD +  +  L+ Y + I DT G +   
Sbjct: 18  IAVVGRPNVGKSTLFNRLVRKRRAITDPTPGVTRDSIEHEWILDPYALTIVDTGGFKVEG 77

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDLYST 334
           D ++++  +++   ++ ADLILLL ++           E   P +   + +  K D    
Sbjct: 78  DSLDEQVKEKSVSYLKRADLILLLMDVTDVTGEDETFIEYLRPYSDKLLLVVNKVDNRER 137

Query: 335 YTEEYDH---------LISSFTGEGLEELINKIKSIL 362
               +++          IS+  G G++ L   +   L
Sbjct: 138 ENGVWNYLSYGLGEPIAISAAHGLGIDLLEEAVLRFL 174


>gi|120554059|ref|YP_958410.1| GTP-binding protein EngA [Marinobacter aquaeolei VT8]
 gi|166225823|sp|A1TZQ4|DER_MARAV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|120323908|gb|ABM18223.1| small GTP-binding protein [Marinobacter aquaeolei VT8]
          Length = 473

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 107/271 (39%), Gaps = 41/271 (15%)

Query: 129 ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS 188
           E +AD +  ++  Q  L +    G+              + +     L F     +    
Sbjct: 100 EMIADYLR-KSGKQAHLVVNKTDGQD-----------PDVAAADFYSLGFESTFLIAAAH 147

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           ++ +L+ +  L  +  +   Q +       G +I ++G  N GKS+L N +  +D  +V 
Sbjct: 148 NRGILSLLEALLPEPENPEDQDRADRYP--GIRIGVVGRPNVGKSTLVNRMLGEDRVVVY 205

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLL 305
           D+PGTTRD + I  + +G+   + DTAG+R   ++    EK  I +T   +++A +++L+
Sbjct: 206 DMPGTTRDSVYIPYERQGHEYTLIDTAGVRRRKNVREAVEKFSIIKTLQAIDDAHVVILV 265

Query: 306 KEINS---KKEISFP-----KNIDFIFIGTKSD---------LYSTYTEEYD-------H 341
            +       +++             +    K D         +        D       +
Sbjct: 266 IDAREGLVDQDLHLIGFVLDAGRSLVIAINKWDGMDPEDRDRVKEQVARRLDFLDYADKY 325

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            IS+  G G+  +   +++   +   K P +
Sbjct: 326 YISALHGTGVGTMYESVQACYESAMSKWPTN 356



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + +   A+V D PG TRD    + + EG    + DT G+   +
Sbjct: 5   IALVGRPNVGKSTLFNQMTRSRDALVADFPGLTRDRKYGEGNYEGQKFIVIDTGGLTGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             ++ E  +++   VE AD++L L +  +          +           +  K+D   
Sbjct: 65  AGIDAEMARQSMQAVEEADIVLFLVDGRAGLTAGDEMIADYLRKSGKQAHLVVNKTDGQD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++    G+  L+  +
Sbjct: 125 PDVAAADFYSLGFESTFLIAAAHNRGILSLLEAL 158


>gi|15828559|ref|NP_325919.1| GTP-binding protein EngA [Mycoplasma pulmonis UAB CTIP]
 gi|26006733|sp|Q98RC1|DER_MYCPU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|14089501|emb|CAC13261.1| GTP-BINDING PROTEIN [Mycoplasma pulmonis]
          Length = 435

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K V+IV D PG TRD +  +++  G   +I DT GI  +D
Sbjct: 10  VAIVGKPNVGKSTLFNRLVGKRVSIVYDQPGVTRDRIYENINWSGKNFRIIDTGGIVVSD 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD--- 330
               ++   +  + +E +++IL + + + +          I        + +  K D   
Sbjct: 70  QPFVEQIRIQAQIAIEESEIILFVIDGSEEITSDDLYIASILRNSKKKVLVLANKLDNNK 129

Query: 331 -----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                +YS   E+Y + ISS  GEG+ E+++K+ ++++ +  +     
Sbjct: 130 NEDYSIYSLGFEDY-YKISSVHGEGIGEVLDKVINLMNFENDQDEDLF 176



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 11/129 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +KI ILG  NAGKSSL NAL K++ +IV++I GTTRD +   +++E     I DTAGI  
Sbjct: 176 FKIAILGKPNAGKSSLLNALTKQERSIVSEIAGTTRDSIKSTIEIEDQKFFIIDTAGINR 235

Query: 280 TDDIVE---KEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
              +VE      + R    ++ +DL +++ +   +           +  K    I +  K
Sbjct: 236 KSKLVESVDHYALMRAMGSLDESDLSIIIIDATEELSHFNARIIGYASDKKKPTIIVINK 295

Query: 329 SDLYSTYTE 337
            DL    T 
Sbjct: 296 WDLIKKETN 304


>gi|295132650|ref|YP_003583326.1| GTP-binding protein EngA [Zunongwangia profunda SM-A87]
 gi|294980665|gb|ADF51130.1| GTP-binding protein EngA [Zunongwangia profunda SM-A87]
          Length = 434

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 12/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   + +    E      +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD 
Sbjct: 154 DLLDAVIESLPEETYKE-ESELPRFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDS 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR    +    E   + R+   +ENAD+ LL+ +     + 
Sbjct: 213 IDTKYNRFGFEFNLVDTAGIRRKSKVKEDLEFYSVMRSVRAIENADVCLLVLDATRGFDG 272

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTE 337
                  ++       + +  K DL    T 
Sbjct: 273 QVQNIFWLAQRNRKGIVILVNKWDLVEKETN 303



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRLIQRREAIVDSVSGVTRDRHYGKSDWNGRNFSLIDTGGYVIGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPK-NIDFIFIGTKSDLY 332
           DD+ E E  K+  L +  AD I+ + ++       +    I   K N        K D  
Sbjct: 65  DDVFEAEIDKQVELAIGEADAIIFMVDVESGITPMDEDVAILLRKVNKPVFLAVNKVDNN 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                  +           I+S  G G  +L++ +   L  +  K    +P
Sbjct: 125 KRLENAVEFYALGLGEYFPIASTNGSGTGDLLDAVIESLPEETYKEESELP 175


>gi|227328671|ref|ZP_03832695.1| GTP-binding protein EngA [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 495

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 208 IKLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMVRDEREYVLIDTAGVRK 267

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 268 RGKVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 327

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S    E                  H IS+  G G+  L   +    S   +++  +
Sbjct: 328 WDGMSQEAREQVKETLDMRLGFIDFARIHFISALHGSGVGNLFESVTEAYSCATRRVSTA 387

Query: 373 IPSH 376
           + + 
Sbjct: 388 MLTR 391



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSD 330
           D VE     ++ + +E AD++L + +       + + I+     +    + +  K+D
Sbjct: 65  DGVETRMAGQSLVAIEEADIVLFMVDARAGLMPADEGIAKHLRSREKTTVLVANKTD 121


>gi|150009038|ref|YP_001303781.1| GTP-binding protein EngA [Parabacteroides distasonis ATCC 8503]
 gi|166225833|sp|A6LEP5|DER_PARD8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|149937462|gb|ABR44159.1| GTP-binding protein, Era/ThdF family [Parabacteroides distasonis
           ATCC 8503]
          Length = 437

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 18/163 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L     AIV +  GTTRD     ++  G    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
             ++D+ E+E  K+  + +E AD+IL + ++            +I        I +  K+
Sbjct: 62  VNSEDVFEEEINKQVKVAIEEADVILFVVDVLNGITDLDMEVAQILRRCKRPVIVVANKA 121

Query: 330 DLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILS 363
           D Y  +    +           IS+  G    +L++KI + L 
Sbjct: 122 DNYDLHPASAEFYSFGLGEPFCISAINGSYTGDLLDKIVATLP 164



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I + + + K+  +     +I I+G  NAGKSSL NA   +D  IVTDI GTTRD 
Sbjct: 154 DLLDKIVATLPEEKVEILEEELPRIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G    + DTAGIR+   +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTKYNKFGLNFYLVDTAGIRKKGKVNEDLEYYSVIRSIRTIENSDVCVLMLDATRGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYST-------------------YTEEYDHLISSFT 347
                  +        +    K DL                      +T+     IS+ T
Sbjct: 274 QDMNIFSLVQKNKKGLVVCVNKWDLIEDKSQKVIDSYTTAIRERLAPFTDFPILFISALT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + +++   K +  N+ K++P +
Sbjct: 334 KQRILKVLETAKEVYENRSKRVPTA 358


>gi|238763554|ref|ZP_04624515.1| GTP-binding protein engA [Yersinia kristensenii ATCC 33638]
 gi|238698186|gb|EEP90942.1| GTP-binding protein engA [Yersinia kristensenii ATCC 33638]
          Length = 494

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 107/272 (39%), Gaps = 30/272 (11%)

Query: 133 DLISSETEMQRRLSMEGMS-GELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           D I ++T      S+       +++ +G+ + +L         D +  E E     ++  
Sbjct: 121 DGIDADTAAADFYSLGLGEVHAIAASHGRGVTQLIEDVMAPYMDAEEPEVELTDEEANAA 180

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
                   +++I            +    K+ I+G  N GKS+L N +  +D  +V D+P
Sbjct: 181 YWAAQEADEDEIPEDEEDDFDPRTL--PIKLAIVGRPNVGKSTLTNRILGEDRVVVYDLP 238

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI 308
           GTTRD + I +  +     + DTAG+R+     + VEK  + +T   +E+++++LL+ + 
Sbjct: 239 GTTRDSIYIPMTRDEREYILIDTAGVRKRGKITETVEKFSVIKTLQAIEDSNVVLLVIDA 298

Query: 309 N---SKKEISFP-----KNIDFIFIGTKSDLYSTYTE----------------EYDHLIS 344
               S +++S            +    K D  +                       H IS
Sbjct: 299 RDGISDQDLSLLGFILNSGRSLVIAVNKWDGMTEEARAQVKDMLDLRLGFVDFARIHFIS 358

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           +  G G+  L   I+       K++  S+ + 
Sbjct: 359 ALHGSGVGNLFESIQEAYDCSTKRVGTSLLTR 390



 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           D VE +   ++ L +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN 356
             T   D         H I++  G G+ +LI 
Sbjct: 125 ADTAAADFYSLGLGEVHAIAASHGRGVTQLIE 156


>gi|254493337|ref|ZP_05106508.1| GTP-binding protein engA [Neisseria gonorrhoeae 1291]
 gi|268598604|ref|ZP_06132771.1| GTP-binding protein engA [Neisseria gonorrhoeae MS11]
 gi|268600957|ref|ZP_06135124.1| GTP-binding protein engA [Neisseria gonorrhoeae PID18]
 gi|268603264|ref|ZP_06137431.1| GTP-binding protein engA [Neisseria gonorrhoeae PID1]
 gi|268681744|ref|ZP_06148606.1| GTP-binding protein engA [Neisseria gonorrhoeae PID332]
 gi|268683971|ref|ZP_06150833.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-92-679]
 gi|268686216|ref|ZP_06153078.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-93-1035]
 gi|226512377|gb|EEH61722.1| GTP-binding protein engA [Neisseria gonorrhoeae 1291]
 gi|268582735|gb|EEZ47411.1| GTP-binding protein engA [Neisseria gonorrhoeae MS11]
 gi|268585088|gb|EEZ49764.1| GTP-binding protein engA [Neisseria gonorrhoeae PID18]
 gi|268587395|gb|EEZ52071.1| GTP-binding protein engA [Neisseria gonorrhoeae PID1]
 gi|268622028|gb|EEZ54428.1| GTP-binding protein engA [Neisseria gonorrhoeae PID332]
 gi|268624255|gb|EEZ56655.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-92-679]
 gi|268626500|gb|EEZ58900.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-93-1035]
          Length = 500

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  +I  +  + +  E         ++G  N GKS+L NA+  +   I  D+ GTTRD +
Sbjct: 170 LIEEILENFPEPEAEEADAKHPVFAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSI 229

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 230 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 289

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 290 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDISRKLYFLDFAKFHFISALKERGI 349

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L   I++  +    K+P    + 
Sbjct: 350 DGLFESIQAAYNAAMIKMPTPKITR 374



 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 62/158 (39%), Gaps = 20/158 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 20  IALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGFEPVV 79

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 80  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 139

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                 ++ Y     E  H+IS   G+G+  LI +I  
Sbjct: 140 DRAVLAAEFYELALGE-PHVISGAHGDGVYYLIEEILE 176


>gi|325912018|ref|ZP_08174420.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 143-D]
 gi|325476203|gb|EGC79367.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 143-D]
          Length = 435

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D PG TRD +  +    G    + DT GI   D
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
           +++E++   +  + +  AD+I+LL ++         +  +I +      I    K+D   
Sbjct: 66  NVIEEQIKTQAEIAINEADVIVLLSDVTGHVTNLDETIAKILYKAKKPIILAINKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +S   G GL +L++ I S  +        +  
Sbjct: 126 QRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKFNGNNTTDDDNNI 175



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 29/187 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +  I+G  N GKSS+ N++  ++  IV D+ GTTRD +    + +G    I DTAGI
Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326
           R    +    EK  + R+   +E +D+ +++ +     I   K I   +       I   
Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292

Query: 327 TKSDLYSTYT-----------EEYDH-------LISSFTGEGLEELINKIKSILSNKFKK 368
            K D+ S  T           +E+ +        +S+ TG+ +E++++ +K++  N+ ++
Sbjct: 293 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352

Query: 369 LPFSIPS 375
           +  S+ +
Sbjct: 353 IQSSVLN 359


>gi|309807087|ref|ZP_07701066.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 03V1-b]
 gi|308166517|gb|EFO68717.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 03V1-b]
          Length = 431

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D PG TRD +  +    G    + DT GI   D
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
           +++E++   +  + +  AD+I+LL ++         +  +I +      I    K+D   
Sbjct: 66  NVIEEQIKTQAEIAINEADVIVLLSDVTGHVTNLDETIAKILYKAKKPIILAINKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +S   G GL +L++ I S  +        +  
Sbjct: 126 QRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKFNGNNTTDDDNNI 175



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 29/187 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +  I+G  N GKSS+ N++  ++  IV D+ GTTRD +    + +G    I DTAGI
Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326
           R    +    EK  + R+   +E +D+ +++ +     I   K I   +       I   
Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292

Query: 327 TKSDLYSTYT-----------EEYDH-------LISSFTGEGLEELINKIKSILSNKFKK 368
            K D+ S  T           +E+ +        +S+ TG+ +E++++ +K++  N+ ++
Sbjct: 293 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352

Query: 369 LPFSIPS 375
           +  S+ +
Sbjct: 353 IQSSVLN 359


>gi|228907236|ref|ZP_04071096.1| GTP-binding protein engA [Bacillus thuringiensis IBL 200]
 gi|228852376|gb|EEM97170.1| GTP-binding protein engA [Bacillus thuringiensis IBL 200]
          Length = 436

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++ ++H  + +         +  ++G  N GKSSL NAL  ++  IV++I GTTRD 
Sbjct: 154 DLLDEAANHFPKIEEEAYDDETIRFSLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +      +     I DTAG+R+   +    EK  + R    +E +D++L++ +     I 
Sbjct: 214 VDTPYSKDDQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIE 273

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST 334
             K+I   +       I +  K D    
Sbjct: 274 QDKKIAGYAHDSGRAVIIVVNKWDAVKK 301



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
             ++ YD           IS   G GL +L+++  +   
Sbjct: 126 MRSDIYDFYSLGFGEPFPISGTHGLGLGDLLDEAANHFP 164


>gi|320140353|gb|EFW32209.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 436

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + SH  + +      +  ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD 
Sbjct: 154 DLLDAVVSHFGEEEEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   +G    + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 IDTEYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEQGKAVVIVVNKWDTVEK 301



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + ++ A +I+ +  +            +I +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIDEAYVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNME 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             T+ YD           IS   G GL +L++ + S  
Sbjct: 126 MRTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVSHF 163


>gi|242242754|ref|ZP_04797199.1| GTP-binding protein EngA [Staphylococcus epidermidis W23144]
 gi|242233890|gb|EES36202.1| GTP-binding protein EngA [Staphylococcus epidermidis W23144]
          Length = 436

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  + ++        +  ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD 
Sbjct: 154 DLLDAVVENFNKESEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   +G    + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 IDTEYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSEVVLVVIDAEQGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEEGKAIVIVVNKWDTVEK 301



 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + +E AD+I+ +  +            ++ +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIEEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNLE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK 368
              + YD           IS   G GL +L++ +    + + + 
Sbjct: 126 MRNDIYDFYSLGFGDPYPISGSHGLGLGDLLDAVVENFNKESED 169


>gi|227356207|ref|ZP_03840596.1| GTP-binding protein [Proteus mirabilis ATCC 29906]
 gi|227163671|gb|EEI48587.1| GTP-binding protein [Proteus mirabilis ATCC 29906]
          Length = 501

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 214 VKLAIVGRPNVGKSTLTNRMLGEERVVVYDMPGTTRDSIYIPMERDGKEYILIDTAGVRK 273

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+ ++ LL+ +     S +++S            +    K
Sbjct: 274 RGKVKETVEKFSVIKTLQAIEDCNVALLVIDAREGISDQDLSLLGYILNSGRSLVIAVNK 333

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  +    E                  H IS+  G G+  L   I+   +   +++  S
Sbjct: 334 WDGMTQEDREQVKDMLDLKLGFVDFARVHFISALHGSGVGNLFESIQEAYTCATRRVGTS 393

Query: 373 IPSH 376
           + + 
Sbjct: 394 MLTR 397



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD      +L+G    I DT GI   +
Sbjct: 10  IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELDGEEFIIIDTGGIDGAE 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE     ++   ++ AD++L L +  +     +    K+          +  K+D   
Sbjct: 70  EGVETHMASQSLQAIQEADIVLFLVDARAGLMPADQGIAKHLRGVEKKTYLVANKTDGID 129

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINK 357
             T   D           I++  G G+ +LI +
Sbjct: 130 IDTALADFYSLGLGEIFPIAASHGRGVSQLIEQ 162


>gi|27468081|ref|NP_764718.1| GTP-binding protein EngA [Staphylococcus epidermidis ATCC 12228]
 gi|57867002|ref|YP_188620.1| GTP-binding protein EngA [Staphylococcus epidermidis RP62A]
 gi|251810897|ref|ZP_04825370.1| GTP-binding protein EngA [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876093|ref|ZP_06284960.1| ribosome-associated GTPase EngA [Staphylococcus epidermidis SK135]
 gi|293366558|ref|ZP_06613235.1| ribosome-associated GTPase EngA [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|37999682|sp|Q8CP62|DER_STAES RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|71151866|sp|Q5HP70|DER_STAEQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|27315626|gb|AAO04760.1|AE016747_257 GTP binding protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637660|gb|AAW54448.1| GTP-binding protein, Era/TrmE family [Staphylococcus epidermidis
           RP62A]
 gi|251805577|gb|EES58234.1| GTP-binding protein EngA [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295118|gb|EFA87645.1| ribosome-associated GTPase EngA [Staphylococcus epidermidis SK135]
 gi|291319327|gb|EFE59696.1| ribosome-associated GTPase EngA [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329735360|gb|EGG71652.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU045]
 gi|329737420|gb|EGG73674.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU028]
          Length = 436

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  + ++        +  ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD 
Sbjct: 154 DLLDAVVENFNKESEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   +G    + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 IDTEYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSEVVLVVIDAEQGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEEGKAIVIVVNKWDTVEK 301



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERISIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + +E AD+I+ +  +            ++ +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIEEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNLE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK 368
              + YD           IS   G GL +L++ +    + + + 
Sbjct: 126 MRNDIYDFYSLGFGDPYPISGSHGLGLGDLLDAVVENFNKESED 169


>gi|268594476|ref|ZP_06128643.1| GTP-binding protein engA [Neisseria gonorrhoeae 35/02]
 gi|268596471|ref|ZP_06130638.1| GTP-binding protein engA [Neisseria gonorrhoeae FA19]
 gi|291044231|ref|ZP_06569940.1| GTP-binding protein engA [Neisseria gonorrhoeae DGI2]
 gi|293399430|ref|ZP_06643583.1| ribosome-associated GTPase EngA [Neisseria gonorrhoeae F62]
 gi|268547865|gb|EEZ43283.1| GTP-binding protein engA [Neisseria gonorrhoeae 35/02]
 gi|268550259|gb|EEZ45278.1| GTP-binding protein engA [Neisseria gonorrhoeae FA19]
 gi|291011125|gb|EFE03121.1| GTP-binding protein engA [Neisseria gonorrhoeae DGI2]
 gi|291609999|gb|EFF39121.1| ribosome-associated GTPase EngA [Neisseria gonorrhoeae F62]
          Length = 502

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  +I  +  + +  E         ++G  N GKS+L NA+  +   I  D+ GTTRD +
Sbjct: 172 LIEEILENFPEPEAEEADAKHPVFAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSI 231

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 232 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 291

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 292 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDISRKLYFLDFAKFHFISALKERGI 351

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L   I++  +    K+P    + 
Sbjct: 352 DGLFESIQAAYNAAMIKMPTPKITR 376



 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 62/158 (39%), Gaps = 20/158 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 22  IALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGFEPVV 81

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 82  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 141

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                 ++ Y     E  H+IS   G+G+  LI +I  
Sbjct: 142 DRAVLAAEFYELALGE-PHVISGAHGDGVYYLIEEILE 178


>gi|255014874|ref|ZP_05287000.1| GTP-binding protein EngA [Bacteroides sp. 2_1_7]
 gi|256840958|ref|ZP_05546465.1| ribosome-associated GTPase EngA [Parabacteroides sp. D13]
 gi|298375727|ref|ZP_06985683.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_19]
 gi|256736801|gb|EEU50128.1| ribosome-associated GTPase EngA [Parabacteroides sp. D13]
 gi|298266764|gb|EFI08421.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_19]
          Length = 437

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 18/163 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L     AIV +  GTTRD     ++  G    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
             ++D+ E+E  K+  + +E AD+IL + ++            +I        I +  K+
Sbjct: 62  VNSEDVFEEEINKQVKVAIEEADVILFVVDVLNGITDLDMEVAQILRRCKRPVIVVANKA 121

Query: 330 DLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILS 363
           D Y  +    +           IS+  G    +L++KI + L 
Sbjct: 122 DNYDLHPASAEFYSFGLGDPFCISAINGSYTGDLLDKIVATLP 164



 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I + + + K+  +     +I I+G  NAGKSSL NA   +D  IVTDI GTTRD 
Sbjct: 154 DLLDKIVATLPEEKVEILEEELPRIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G    + DTAGIR+   +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTKYNKFGLNFYLVDTAGIRKKGKVNEDLEYYSVIRSIRAIENSDVCVLMLDATRGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYST-------------------YTEEYDHLISSFT 347
                  +        +    K DL                      +T+     IS+ T
Sbjct: 274 QDMNIFSLVQKNKKGLVVCVNKWDLIEDKSQKVIDSYTTAIRERLAPFTDFPILFISALT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + +++   K +  N+ K++P +
Sbjct: 334 KQRILKVLETAKEVYENRSKRVPTA 358


>gi|283770547|ref|ZP_06343439.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus H19]
 gi|283460694|gb|EFC07784.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus H19]
          Length = 436

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + SH  + +      +  ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD 
Sbjct: 154 DLLDAVVSHFGEEEEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   EG    + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 IDTEYSYEGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEQGKAVVIVVNKWDTVEK 301



 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   Y   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTYDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + ++ AD+I+ +  +            +I +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNME 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             T+ YD           IS   G GL +L++ + S  
Sbjct: 126 MRTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVSHF 163


>gi|197285696|ref|YP_002151568.1| GTP-binding protein EngA [Proteus mirabilis HI4320]
 gi|238693198|sp|B4EZS9|DER_PROMH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|194683183|emb|CAR43820.1| GTP-binding protein [Proteus mirabilis HI4320]
          Length = 496

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+
Sbjct: 209 VKLAIVGRPNVGKSTLTNRMLGEERVVVYDMPGTTRDSIYIPMERDGKEYILIDTAGVRK 268

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+ ++ LL+ +     S +++S            +    K
Sbjct: 269 RGKVKETVEKFSVIKTLQAIEDCNVALLVIDAREGISDQDLSLLGYILNSGRSLVIAVNK 328

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  +    E                  H IS+  G G+  L   I+   +   +++  S
Sbjct: 329 WDGMTQEDREQVKDMLDLKLGFVDFARVHFISALHGSGVGNLFESIQEAYTCATRRVGTS 388

Query: 373 IPSH 376
           + + 
Sbjct: 389 MLTR 392



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD      +L+G    I DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELDGEEFIIIDTGGIDGAE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE     ++   ++ AD++L L +  +     +    K+          +  K+D   
Sbjct: 65  EGVETHMASQSLQAIQEADIVLFLVDARAGLMPADQGIAKHLRGVEKKTYLVANKTDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINK 357
             T   D           I++  G G+ +LI +
Sbjct: 125 IDTALADFYSLGLGEIFPIAASHGRGVSQLIEQ 157


>gi|149190086|ref|ZP_01868363.1| GTP-binding protein EngA [Vibrio shilonii AK1]
 gi|148836116|gb|EDL53076.1| GTP-binding protein EngA [Vibrio shilonii AK1]
          Length = 494

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 27/190 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
            +     K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + D
Sbjct: 199 RLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDDREYVLID 258

Query: 274 TAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDF 322
           TAG+R    I    EK  + +T   VE+A+++LL+ +     S +++S            
Sbjct: 259 TAGVRRRRRINETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNSGRSI 318

Query: 323 IFIGTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKF 366
           +    K D   T  +E+                 H IS+  G G+  L   ++    +  
Sbjct: 319 VIAVNKWDGLDTDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYKSAT 378

Query: 367 KKLPFSIPSH 376
            ++  S+ + 
Sbjct: 379 TRVGTSVLTR 388



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L L +  +     + +  ++          +  K D   
Sbjct: 65  EGVETKMAEQSLAAIDEADVVLFLVDGRAGLTSADEAIAQHLRKIEKPSFLVINKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINK 357
                 +            ++  G G+  LI +
Sbjct: 125 ADAASAEFWQLGVEDMYHIAAAHGRGVTALIER 157


>gi|295094896|emb|CBK83987.1| ribosome-associated GTPase EngA [Coprococcus sp. ART55/1]
          Length = 440

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 19/166 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  D++   Y   + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGEKISIVQDTPGVTRDRIYADINWLDYNFTLIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           D+I+ K   ++  + +E AD+IL + ++            ++        + +  K D +
Sbjct: 66  DNIILKSMREQAEIAIETADVILFMTDVRQGMVDDDAKVADMLRRSKKPIVLVVNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKK 368
             +  +            H IS  +  G+ ++++++ S  +   K 
Sbjct: 126 EKFMPDVYEFYNLGLGDPHPISGSSRLGIGDMLDEVVSHFNESAKD 171



 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++ SH ++    +      +I I+G  N GKSS+ N L  +D  IV+DI GTTRD 
Sbjct: 156 DMLDEVVSHFNESAKDDTEDERPRIAIIGKPNVGKSSIINKLLGEDRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++   G      DTAG+R    I   +E+  I RT   VE  ++ +L+ +       
Sbjct: 216 VDTEIVRNGREYVFIDTAGLRRKSKIKEDIERYSIIRTVSAVERCNVAVLVIDATEGITD 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYS-------TYTEEYDH-----------LISSFTG 348
                  I+  +    I    K D           +TEE  +            IS+ TG
Sbjct: 276 QDAKIAGIAHDRGKGMIIAVNKWDAIEKNDKTIYKFTEEIRNKLSYMPYAELLFISAQTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L   I +++ N   ++   + +
Sbjct: 336 QRLPKLFETIDAVIENHSLRIATGVLN 362


>gi|268608007|ref|ZP_06141738.1| small GTP-binding protein [Ruminococcus flavefaciens FD-1]
          Length = 442

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 19/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + ++IV D PG TRD +    +  G    + DT GI  ++
Sbjct: 6   VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYSKCEWRGKEFMVVDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLY 332
           DD++  +  +++ L +E AD+I+ + +I         +  ++        +    K D  
Sbjct: 66  DDVILSQMRRQSELAIEKADVIVFVTDIRCGVTADDYTVAQMLLKSGKPIVLAVNKVDNL 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
                E              ISS  G G  ++++K+   L    ++ 
Sbjct: 126 GEPPLELYEFYNLGLGDPFPISSVHGHGTGDMLDKVYEYLPASDEEE 172



 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +  ++      E   +  K+ ++G  NAGKSSL N +A ++  IV+DI GTTRD 
Sbjct: 156 DMLDKVYEYLPASDEEEYDDDCIKVAVIGKPNAGKSSLINKIAGEERVIVSDIAGTTRDS 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK--- 311
               ++ E       DTAGIR+   + EK     + R ++ V+ AD+ +++ +       
Sbjct: 216 TDTVIENEQGKFVFIDTAGIRKKSKVTEKIEHYSVLRAYMAVDRADVCVIMLDATEGFTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE---------EYDH---------LISSFTG 348
                   +  +    +    K DL     +         E D           IS+ TG
Sbjct: 276 QDSKVAGYAHEQGKACVVAVNKWDLIEKDDKTMQEFRTKLENDFSFMSYVPFVFISAKTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + + +L   IK        ++   + +
Sbjct: 336 QRINKLYELIKYTYEQNSMRISTGMLN 362


>gi|188587902|ref|YP_001920548.1| GTP-binding protein EngA [Clostridium botulinum E3 str. Alaska E43]
 gi|238689667|sp|B2V3Z1|DER_CLOBA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|188498183|gb|ACD51319.1| ribosome-associated GTPase EngA [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 438

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +  H  +           +I ++G  N GKSSL N L  ++  IV+D+ GTTRD 
Sbjct: 155 DMLDKVVEHFDRFDADAEDDEYIRIAMIGKPNVGKSSLINKLLGEERLIVSDVAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +   L+ E     + DTAG+R      + +E+  + RT+  +E AD+ +L+ +       
Sbjct: 215 IDSYLETEQGKFILIDTAGLRRKSKVKEEIERYSVIRTYASIEKADVCILMIDAQDGVTE 274

Query: 315 SFPK--------NIDFIFIGTKSDLYSTYTEEYDH------------------LISSFTG 348
              K        N   + +  K DL     +  +                    IS+ TG
Sbjct: 275 QDEKIIGYAHELNKAIMVLVNKWDLVEKDDKTMEKFKKDLQGSLKFMPYAEYLFISALTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           +   +++   K   +N  K++   I +
Sbjct: 335 QRTHKILELAKKCYNNYNKRVSTGILN 361



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + I+G  N GKS+LFN LA K ++IV D PG TRD +  + +   Y   + DT GI  T 
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTGGIEPTN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLY 332
           DDI+ K+  ++  + +E AD+I+ + +       + +E++          + +  K D  
Sbjct: 66  DDIIMKQMRRQANIAIETADVIVFIVDGKEGLTAADQEVANMLRKSKKPVVLVVNKIDSL 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 ++            S+    GL ++++K+              
Sbjct: 126 KYEENSWEFYNLGIGDPITISASQALGLGDMLDKVVEHFDRFDADAEDD 174


>gi|317060485|ref|ZP_07924970.1| GTP-binding protein [Fusobacterium sp. D12]
 gi|313686161|gb|EFS22996.1| GTP-binding protein [Fusobacterium sp. D12]
          Length = 442

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 27/205 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +   I + +  E   +  K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD 
Sbjct: 159 DMLDMVVDIIGKLEFPEEEEDILKLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDA 218

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++ +     I DTAGIR     ++ +E   + R    ++ AD+ LL+ +       
Sbjct: 219 IDTLIEYKENRYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCLLMLDAQEGLTE 278

Query: 312 -----KEISFPKNIDFIFIGTKSDLY-----STYTEEY-----------DHLISSFTGEG 350
                  I+  +    + +  K DL        Y EE               +S+ TG+ 
Sbjct: 279 QDKRIAGIAAEERKPIVIVMNKWDLVKNKDMKKYKEELYAELPFLSYAPIEFVSALTGQR 338

Query: 351 LEELINKIKSILSNKFKKLPFSIPS 375
             +L+     I     K++   + +
Sbjct: 339 TTKLLEIADGIYEEYTKRISTGLLN 363



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 14/189 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + I+G  N GKS+LFN L    VAIV D+PG TRD L  + +  G    + DT G+    
Sbjct: 9   VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  +      +EI++    K    +    K D Y
Sbjct: 69  NDFMMTKIKEQAEVAMNEADVILFVVDGKAGVNPLDEEIAYILRKKQKPVVLCVNKIDNY 128

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
               ++         G G E L+  I          +   +      L    +    L++
Sbjct: 129 LQQQDDVYEFW----GLGFEYLV-AISGAHKVNLGDMLDMVVDIIGKLEFPEEEEDILKL 183

Query: 393 ASLNEKDCG 401
           A + + + G
Sbjct: 184 AVIGKPNAG 192


>gi|269797893|ref|YP_003311793.1| small GTP-binding protein [Veillonella parvula DSM 2008]
 gi|269094522|gb|ACZ24513.1| small GTP-binding protein [Veillonella parvula DSM 2008]
          Length = 444

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 11/156 (7%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            + L ++  L +D   H           +   + ++G  N GKSSL NAL  +D  IV+D
Sbjct: 149 AKNLMNLGDLLDDTVKHFPPVGTNVDDEDTIHVAVIGRPNVGKSSLTNALLGQDRVIVSD 208

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLK 306
           + GTTRD +      EG    + DTAG+R     ++ VE+  I R+   V+ AD+++L+ 
Sbjct: 209 VAGTTRDSIDTYWTHEGQKFVLIDTAGMRRKSKIEEAVERYSIVRSLRSVDRADIVVLVL 268

Query: 307 EINSK--------KEISFPKNIDFIFIGTKSDLYST 334
           +               ++      + +  K DL   
Sbjct: 269 DAQDGVTEQDKKIAGYAYEAGKGVVIVVNKWDLVKK 304



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 20/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + ++G  N GKS+LFNA+  K ++IV DIPG TRD +  D +       + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKE---ISFPKNIDFIFIGTKSD 330
           E   ++ K    +  L +E AD+IL + +     + + +E   I        + +  K D
Sbjct: 66  ENSHVIPKMMRLQAELAIEEADVILFVVDGKQGIVPADEEVANILRASGKPIVLVVNKID 125

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELIN 356
             +     Y+            S+     L +L++
Sbjct: 126 SVNQEPNIYEFYNLGLGDPIGISAKNLMNLGDLLD 160


>gi|194098169|ref|YP_002001217.1| GTP-binding protein EngA [Neisseria gonorrhoeae NCCP11945]
 gi|239998620|ref|ZP_04718544.1| GTP-binding protein EngA [Neisseria gonorrhoeae 35/02]
 gi|240013743|ref|ZP_04720656.1| GTP-binding protein EngA [Neisseria gonorrhoeae DGI18]
 gi|240016181|ref|ZP_04722721.1| GTP-binding protein EngA [Neisseria gonorrhoeae FA6140]
 gi|240080325|ref|ZP_04724868.1| GTP-binding protein EngA [Neisseria gonorrhoeae FA19]
 gi|240112536|ref|ZP_04727026.1| GTP-binding protein EngA [Neisseria gonorrhoeae MS11]
 gi|240115276|ref|ZP_04729338.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID18]
 gi|240117563|ref|ZP_04731625.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID1]
 gi|240120813|ref|ZP_04733775.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID24-1]
 gi|240123118|ref|ZP_04736074.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID332]
 gi|240125369|ref|ZP_04738255.1| GTP-binding protein EngA [Neisseria gonorrhoeae SK-92-679]
 gi|240127821|ref|ZP_04740482.1| GTP-binding protein EngA [Neisseria gonorrhoeae SK-93-1035]
 gi|260440907|ref|ZP_05794723.1| GTP-binding protein EngA [Neisseria gonorrhoeae DGI2]
 gi|238690187|sp|B4RKD2|DER_NEIG2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|193933459|gb|ACF29283.1| essential Gc protein [Neisseria gonorrhoeae NCCP11945]
 gi|317163893|gb|ADV07434.1| GTP-binding protein EngA [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 485

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  +I  +  + +  E         ++G  N GKS+L NA+  +   I  D+ GTTRD +
Sbjct: 155 LIEEILENFPEPEAEEADAKHPVFAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDISRKLYFLDFAKFHFISALKERGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L   I++  +    K+P    + 
Sbjct: 335 DGLFESIQAAYNAAMIKMPTPKITR 359



 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 62/158 (39%), Gaps = 20/158 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                 ++ Y     E  H+IS   G+G+  LI +I  
Sbjct: 125 DRAVLAAEFYELALGE-PHVISGAHGDGVYYLIEEILE 161


>gi|257462859|ref|ZP_05627265.1| GTP-binding protein [Fusobacterium sp. D12]
          Length = 438

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 27/205 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +   I + +  E   +  K+ ++G  NAGKSSL N L+ ++  IV+DI GTTRD 
Sbjct: 155 DMLDMVVDIIGKLEFPEEEEDILKLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++ +     I DTAGIR     ++ +E   + R    ++ AD+ LL+ +       
Sbjct: 215 IDTLIEYKENRYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCLLMLDAQEGLTE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLY-----STYTEEY-----------DHLISSFTGEG 350
                  I+  +    + +  K DL        Y EE               +S+ TG+ 
Sbjct: 275 QDKRIAGIAAEERKPIVIVMNKWDLVKNKDMKKYKEELYAELPFLSYAPIEFVSALTGQR 334

Query: 351 LEELINKIKSILSNKFKKLPFSIPS 375
             +L+     I     K++   + +
Sbjct: 335 TTKLLEIADGIYEEYTKRISTGLLN 359



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 14/189 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + I+G  N GKS+LFN L    VAIV D+PG TRD L  + +  G    + DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +  +      +EI++    K    +    K D Y
Sbjct: 65  NDFMMTKIKEQAEVAMNEADVILFVVDGKAGVNPLDEEIAYILRKKQKPVVLCVNKIDNY 124

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
               ++         G G E L+  I          +   +      L    +    L++
Sbjct: 125 LQQQDDVYEFW----GLGFEYLV-AISGAHKVNLGDMLDMVVDIIGKLEFPEEEEDILKL 179

Query: 393 ASLNEKDCG 401
           A + + + G
Sbjct: 180 AVIGKPNAG 188


>gi|157144555|ref|YP_001451874.1| GTP-binding protein EngA [Citrobacter koseri ATCC BAA-895]
 gi|166224326|sp|A8AD75|DER_CITK8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157081760|gb|ABV11438.1| hypothetical protein CKO_00275 [Citrobacter koseri ATCC BAA-895]
          Length = 490

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 263 RGKVTDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 322

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  +   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 323 WDGLTQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 382

Query: 373 IPSH 376
           + + 
Sbjct: 383 MLTR 386



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358
                 D         H I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYALGLGEIHPIAASHGRGVLSLLEHV 158


>gi|158522145|ref|YP_001530015.1| small GTP-binding protein [Desulfococcus oleovorans Hxd3]
 gi|226741135|sp|A8ZU05|DER_DESOH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|158510971|gb|ABW67938.1| small GTP-binding protein [Desulfococcus oleovorans Hxd3]
          Length = 458

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 109/290 (37%), Gaps = 35/290 (12%)

Query: 122 KIDLLEAESLADLISSETEMQRR--LSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
              + EA+++  +   ++ +      +M  +           ++K+      +     F 
Sbjct: 77  HRAIDEADAVLLVFDGKSGISPFDREAMAFLQSASC-PVFYLVNKIDSPEREVYTAEFFG 135

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
              D     S      +    +D+ + + + +      +  K+ ++G  N GKS+L N +
Sbjct: 136 LGLDNLYPVSGAHGYGVTDFLDDLVNALPETEPEPPADDMIKLAVVGRPNVGKSTLINRI 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+D+PGTTR+ +    +++G    + DTAG+R    +    EK    +T   +
Sbjct: 196 LGQERMIVSDVPGTTRESVDTVCEIDGRSYLLIDTAGLRRKSRVSVKLEKFSAIKTLKSL 255

Query: 297 ENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEE---------- 338
           +  D+ L+L +               +F +    IF+  K DL     ++          
Sbjct: 256 DRCDIALILVDAEEGVTDQDVTIAGYAFERGCGCIFLVNKWDLAKEQEKKAKTFYDDLQD 315

Query: 339 --------YDHLISSFTG---EGLEELINKIKSILSNKFKKLPFSIPSHK 377
                       IS+ TG   + + ELI+ + +  +   K    +    +
Sbjct: 316 QAKFLSFAPAVTISAATGFRVKKIFELIDAVHAQYTFNIKTGELNNIFER 365



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           +VILG  N GKS+LFN L +   A+V D+PG TRD L  D++  G    + DT G +   
Sbjct: 5   VVILGRPNVGKSTLFNRLTRTQNALVDDMPGVTRDRLYGDVEWNGVFFSLVDTGGFLSGD 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSDLY 332
           DD        +    ++ AD +LL+ +  S      ++ ++F +  +    ++  K D  
Sbjct: 65  DDFFMPHIQSQIHRAIDEADAVLLVFDGKSGISPFDREAMAFLQSASCPVFYLVNKIDSP 124

Query: 333 ST--YTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               YT E+        + +S   G G+ + ++ + + L     + P  
Sbjct: 125 EREVYTAEFFGLGLDNLYPVSGAHGYGVTDFLDDLVNALPETEPEPPAD 173


>gi|229016860|ref|ZP_04173788.1| GTP-binding protein engA [Bacillus cereus AH1273]
 gi|229023066|ref|ZP_04179580.1| GTP-binding protein engA [Bacillus cereus AH1272]
 gi|228738212|gb|EEL88694.1| GTP-binding protein engA [Bacillus cereus AH1272]
 gi|228744421|gb|EEL94495.1| GTP-binding protein engA [Bacillus cereus AH1273]
          Length = 436

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++ ++H  + +         +  ++G  N GKSSL NAL  ++  IV++I GTTRD 
Sbjct: 154 DLLDEAANHFPKIEEEAYDDETIRFSLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +      +     I DTAG+R+   +    EK  + R    +E +D++L++ +     I 
Sbjct: 214 VDTPYSKDDQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIE 273

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST 334
             K+I   +       I +  K D    
Sbjct: 274 QDKKIAGYAHDSGRAVIIVVNKWDAVKK 301



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
             ++ YD           IS   G GL +L+++  +   
Sbjct: 126 MRSDIYDFYALGFGEPFPISGTHGLGLGDLLDEAANHFP 164


>gi|146308511|ref|YP_001188976.1| GTP-binding protein EngA [Pseudomonas mendocina ymp]
 gi|166225842|sp|A4XY28|DER_PSEMY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145576712|gb|ABP86244.1| small GTP-binding protein [Pseudomonas mendocina ymp]
          Length = 492

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G K+ I+G  N GKS+L N +  ++  IV D  GTTRD + I  + +     + DTAG
Sbjct: 194 KDGIKLAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERDDEKYTLIDTAG 253

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R    I    EK  + +T   ++++++++ + +                       +  
Sbjct: 254 VRRRGKIFEAVEKFSVVKTLQAIQDSNVVVFVMDAREGVVDHDLNLLGFVLESGRALVIA 313

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D      ++Y                 H IS+  G G+  L   +++   +   + 
Sbjct: 314 LNKWDGMDQGQKDYVKTELERRLFFVDFADIHFISALHGTGVGHLYKSVQAAFHSAVTRW 373

Query: 370 PFS 372
           P S
Sbjct: 374 PTS 376



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 13/140 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDAIVGDLSGLTRDRQYGEAKWQGRTYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + ++ +  +++   +E AD +L L +  +          E    +N     +  K D   
Sbjct: 65  EGIDAKMAEQSLQAIEEADAVLFLVDARAGMTASDQMIGEHLRRRNKRSFLVVNKVD--- 121

Query: 334 TYTEEYDHLISSFTGEGLEE 353
               + D   + F+  GL E
Sbjct: 122 --NLDVDLARAEFSPMGLGE 139


>gi|163939419|ref|YP_001644303.1| GTP-binding protein EngA [Bacillus weihenstephanensis KBAB4]
 gi|229010911|ref|ZP_04168107.1| GTP-binding protein engA [Bacillus mycoides DSM 2048]
 gi|229058239|ref|ZP_04196627.1| GTP-binding protein engA [Bacillus cereus AH603]
 gi|229132411|ref|ZP_04261265.1| GTP-binding protein engA [Bacillus cereus BDRD-ST196]
 gi|229166450|ref|ZP_04294206.1| GTP-binding protein engA [Bacillus cereus AH621]
 gi|229710726|sp|A9VMB3|DER_BACWK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|163861616|gb|ABY42675.1| small GTP-binding protein [Bacillus weihenstephanensis KBAB4]
 gi|228617024|gb|EEK74093.1| GTP-binding protein engA [Bacillus cereus AH621]
 gi|228651117|gb|EEL07098.1| GTP-binding protein engA [Bacillus cereus BDRD-ST196]
 gi|228720103|gb|EEL71687.1| GTP-binding protein engA [Bacillus cereus AH603]
 gi|228750311|gb|EEM00141.1| GTP-binding protein engA [Bacillus mycoides DSM 2048]
          Length = 436

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++ ++H  + +         +  ++G  N GKSSL NAL  ++  IV++I GTTRD 
Sbjct: 154 DLLDEAANHFPKIEEEAYDDETIRFSLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +      +     I DTAG+R+   +    EK  + R    +E +D++L++ +     I 
Sbjct: 214 VDTPYSKDDQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIE 273

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST 334
             K+I   +       I +  K D    
Sbjct: 274 QDKKIAGYAHDSGRAVIIVVNKWDAVKK 301



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVDNPD 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
             ++ YD           IS   G GL +L+++  +   
Sbjct: 126 MRSDIYDFYALGFGEPFPISGTHGLGLGDLLDEAANHFP 164


>gi|189502515|ref|YP_001958232.1| GTP-binding protein EngA [Candidatus Amoebophilus asiaticus 5a2]
 gi|238692314|sp|B3ETF1|DER_AMOA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189497956|gb|ACE06503.1| hypothetical protein Aasi_1169 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 433

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 27/189 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E   +  KI ILG  N GKSSL NAL  ++ +IVT I GTTRD +    +L G    ++D
Sbjct: 168 EQETDIPKIAILGRPNVGKSSLLNALLGEERSIVTPIAGTTRDAIDTTYNLYGKNFILTD 227

Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDF 322
           TAGIR+   +   +E     R    +++AD+ +++ +     E        +++      
Sbjct: 228 TAGIRKKSKVKEDIEFYSTLRALKALQDADVCIIMIDATLGLEGQDVNLISLAYKYKKGI 287

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP---SHKRH 379
           + +  K DL     ++ +H  + F     +EL              +P         +R 
Sbjct: 288 LLLVNKWDLI----KKDNHTNAQFKKNIEQEL---------GAHSHIPILFISALHKQRI 334

Query: 380 LYHLSQTVR 388
              + + + 
Sbjct: 335 FQAIEKALE 343



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 19/171 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++  AI+    GTTRD         G    + DT G ++ +
Sbjct: 5   VAIVGRPNVGKSTLFNRLVEERKAIMASESGTTRDRHYGYATWNGKNFTVVDTGGYVQGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLY 332
            DI EK   ++  + +E A ++L + +              I    +   + +  K+D  
Sbjct: 65  SDIFEKSICEQAKIAIEEASVVLFMVDCQVGITAMDKEVAHILRAADKPVLLVANKADNV 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            T    ++           IS+ +G G  +L++++ ++      +    IP
Sbjct: 125 DTALMAHEFHALGLGNPYPISAASGTGTGDLLDQV-TVYCQDTIEQETDIP 174


>gi|218437880|ref|YP_002376209.1| GTP-binding protein EngA [Cyanothece sp. PCC 7424]
 gi|226741132|sp|B7KHD2|DER_CYAP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|218170608|gb|ACK69341.1| small GTP-binding protein [Cyanothece sp. PCC 7424]
          Length = 452

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  K+ I+G  N GKSSL NAL  ++ AIV+ I GTTRD + + +       ++ DTAGI
Sbjct: 175 NEIKVAIVGRPNVGKSSLLNALTGENRAIVSPISGTTRDAIDMVVQRNEQQYRLIDTAGI 234

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEI---NSKKEISFP-----KNIDFIFIG 326
           R   ++    E   I R F  +  AD++L + +     + +++        +    + + 
Sbjct: 235 RRKKNVEYGAEFFSINRAFKAIRRADVVLFVIDALDGITDQDLKLAGRISDEGRATVLVI 294

Query: 327 TKSDLYST 334
            K D    
Sbjct: 295 NKWDAVDK 302



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N LA    AIV D PG TRD        +    ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLAGDQQAIVHDEPGITRDRTYRPAFWQDRDFQVVDTGGLVFDD 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLY 332
           D        ++    +  A   + + +       + +EI+     +++  I    K +  
Sbjct: 66  DTEFLPLIREQAMTALAEAHAAIFVVDGQTGPTPADEEIANWLRSQSVPIILAVNKCESV 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKI 358
                +               SS  G G  EL++K+
Sbjct: 126 EQGLIQASEFWQLGLGEPYPISSIHGSGTGELLDKL 161


>gi|78484970|ref|YP_390895.1| small GTP-binding protein domain-containing protein [Thiomicrospira
           crunogena XCL-2]
 gi|78363256|gb|ABB41221.1| GTP-binding protein [Thiomicrospira crunogena XCL-2]
          Length = 480

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 116/288 (40%), Gaps = 35/288 (12%)

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
            +  A LI ++  +     +   +  +  L  +       + +     +   E   + + 
Sbjct: 90  VDGRAGLIPADESIASY--IRHFNKPVYLLVNKAEGHKKDVIANDFYQMGLGEPFVISSA 147

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAI 246
               V   I  + +D++  +      ++ ++ G ++ ++G  N GKS+L N +  ++  +
Sbjct: 148 HGDNVNEMIESVLSDVAQDVEDEDELDLDKHPGIRVAVIGRPNVGKSTLINRMIGEERVV 207

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE---GIKRTFLEVENADLIL 303
             D+PGTTRD + +  + +G L  + DTAG+R   +I EK     I +    +E++++++
Sbjct: 208 AFDMPGTTRDSIYVPFERQGELYTLIDTAGVRRRKNIKEKIEKFSIVKAIEAMESSNVVV 267

Query: 304 LLKEINSK--------KEISFPKNIDFIFIGTK-----SDLYSTYTEEYD---------- 340
           L+ + +            ++       +    K     SD  +    E +          
Sbjct: 268 LVVDGSEGITDQDLTLLGLALESGRGLVIAINKWDNLTSDQRAKIKHELEYKLHFVDYAK 327

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
            HLIS+  G G+ +L   I ++     K++  S  +       L Q V
Sbjct: 328 RHLISALHGTGVGDLFKTINAVYHAAMKQVSTSDLNRV-----LEQAV 370



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   AIV D PG TRD       +      + DT G+    
Sbjct: 6   IALVGRPNVGKSTLFNRLTRSRDAIVADYPGLTRDRQYGTGRVGSTPYIVVDTGGLSGEQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTKSDLYS 333
           + V+     +    +  AD +L L +  +     + S        N     +  K++ + 
Sbjct: 66  EGVDPLMAGQVQSAIGEADAVLFLVDGRAGLIPADESIASYIRHFNKPVYLLVNKAEGHK 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                 D            SS  G+ + E+I  + S ++   +    
Sbjct: 126 KDVIANDFYQMGLGEPFVISSAHGDNVNEMIESVLSDVAQDVEDEDE 172


>gi|238897953|ref|YP_002923633.1| putative GTP-binding protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259645880|sp|C4K4J2|DER_HAMD5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|229465711|gb|ACQ67485.1| putative GTP-binding protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 496

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V DIPGTTRD + I L          DTAG+R+
Sbjct: 210 IKLAIVGRPNVGKSTLVNHILAQDRMLVYDIPGTTRDSIYIPLIRNNREYIFIDTAGVRK 269

Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
           +  I EK     + +T   +ENA+++LL+ + N   S +++S            +    K
Sbjct: 270 SAKIKEKVERFSVIKTLKAIENANVVLLVIDANEGVSDQDLSLLSFILNSGRSLVITVNK 329

Query: 329 SDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S+   +                  H IS+  G G+E L   IK       K++  S
Sbjct: 330 WDAISSEKRKQIKNSLDLRLGFMDFARTHFISALHGSGVENLFKSIKEAYDCSTKRINTS 389

Query: 373 IPSH 376
           + + 
Sbjct: 390 LLTR 393



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 10/119 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+ FN L +   A+V D PG TRD      ++E +   I DT GI   +
Sbjct: 5   IALIGRPNVGKSTFFNRLTQTANALVADFPGLTRDRQYGHAEIENHKFIIIDTGGINGIE 64

Query: 282 DI--VEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNID-----FIFIGTKSD 330
            I  ++K    ++FL +E AD++L + +  +     ++   K++         +  K D
Sbjct: 65  GIENIQKHMTHQSFLAIEEADVVLFILDARAGLLPADLEIAKHLRKRKKATFLVANKID 123


>gi|126175188|ref|YP_001051337.1| GTP-binding protein EngA [Shewanella baltica OS155]
 gi|166225854|sp|A3D6V5|DER_SHEB5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|125998393|gb|ABN62468.1| small GTP-binding protein [Shewanella baltica OS155]
          Length = 488

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ EG    I DTAG+R 
Sbjct: 199 IKLAIIGKPNVGKSTLTNRILGEERVVVFDEPGTTRDSIYIPMEREGREYVIIDTAGVRR 258

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTK 328
              +    EK  + +T   VE+A+++LL+ +     +++++     +       +    K
Sbjct: 259 RSKVHQVIEKFSVIKTLKAVEDANVVLLIIDAREGIAEQDLGLLGFALNAGRALVIAVNK 318

Query: 329 SD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D     +      E D           H IS+  G G+  L   I+    +  +++  S
Sbjct: 319 WDGIDQGIKDRVKSELDRRLGFIDFARIHFISALHGTGVGHLFESIEEAYDSATRRVSTS 378

Query: 373 IPSH 376
           + + 
Sbjct: 379 MLTR 382



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSD 330
           + +E +  +++   +E AD++L + +  +     ++S  ++          +  K D
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSREKTTFVVANKVD 121


>gi|257468935|ref|ZP_05633029.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063183|ref|ZP_07927668.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688859|gb|EFS25694.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185]
          Length = 441

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + ++  I +  L E   +  K+ I+G  NAGKSSL N L+ ++  IV+DI GTTRD 
Sbjct: 155 DMLDMVTEMIEKIDLPEEEEDVLKLAIIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +  +     I DTAGIR     ++ +E   + R    ++ AD+ +L+ +       
Sbjct: 215 IDTIVQYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCILMLDGKEGLTE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                  I+  +    + +  K DL   
Sbjct: 275 QDKRIAGIAAEELKPIVVVVNKWDLVDK 302



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  + +  G    + DT G+   +
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDRIAIVDDMPGVTRDRLYRETEWNGVEFVVVDTGGLEPRN 64

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTKSD-L 331
           +      IK +  + +  AD+IL + +  S      +EI++    K    I    K D  
Sbjct: 65  NEFMMTKIKEQAEVAMNEADVILFVVDGKSGVNPLDEEIAYILRKKQKPIILCVNKIDNF 124

Query: 332 YSTYTEEYDHLISSFTGEGLEELI 355
                + YD       G G E LI
Sbjct: 125 LQQQDDVYDFW-----GLGFEHLI 143


>gi|308270408|emb|CBX27020.1| GTP-binding protein engA [uncultured Desulfobacterium sp.]
          Length = 442

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 104/240 (43%), Gaps = 13/240 (5%)

Query: 122 KIDLLEAESLADLISSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           K  + +A+++  ++  ++ +    S +  +   +S      ++K+      I     +S 
Sbjct: 77  KQSIDDADAIIMMLDGKSGVSPFDSDIVQLLRSVSKPVFYVVNKIDGDEKEINLYEFYSL 136

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             +     S E    +    +D+ S   +   G+  ++  K+ ++G  N GKSSL N + 
Sbjct: 137 GIERIYSLSSEHGYGVGSFLDDLVSIFPKADSGQ-YQDIIKVAVIGRPNVGKSSLINRIL 195

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVE 297
            KD  IV+D+PGTTRD +    +++G    I DTAGIR    +   +EK  I +    ++
Sbjct: 196 GKDRHIVSDVPGTTRDAVDSLCEIKGKQYLIIDTAGIRRKSKVSKKIEKFSIIKALKSLD 255

Query: 298 NADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
             D+ L++ + +   + ++IS       +    IF+  K D      +     I     E
Sbjct: 256 RCDIALIIIDASEGITDQDISIAGYAYERECGCIFLLNKWDTVEKGDKIKKKFIEQLKYE 315



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 20/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           I I+G  N GKS+ FN + +   AIV D PG TRD +  D         + DT G    +
Sbjct: 5   ITIVGRPNVGKSTFFNRVTRSKDAIVDDFPGVTRDCIHRDAVWNDVEFTLVDTGGFAYGD 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD- 330
            DDI  K    +    +++AD I+++ +  S          ++    +    ++  K D 
Sbjct: 65  EDDINSK-VRMQVKQSIDDADAIIMMLDGKSGVSPFDSDIVQLLRSVSKPVFYVVNKIDG 123

Query: 331 ------LYSTYTE--EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                 LY  Y+   E  + +SS  G G+   ++ + SI           I 
Sbjct: 124 DEKEINLYEFYSLGIERIYSLSSEHGYGVGSFLDDLVSIFPKADSGQYQDII 175


>gi|225181110|ref|ZP_03734557.1| small GTP-binding protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168307|gb|EEG77111.1| small GTP-binding protein [Dethiobacter alkaliphilus AHT 1]
          Length = 440

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++++ H+ + +         ++ I+G  N GKSSL N L+  +  IV+D+PGTTRD 
Sbjct: 152 DLLDEVAKHLPETEEFPEDEEILRVAIIGRPNVGKSSLTNKLSGTERVIVSDMPGTTRDA 211

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           + + ++ +       DTAGIR     D+ VE   + R+    E+AD++L+L +       
Sbjct: 212 IDLLIERDNRKYLFVDTAGIRRKSKVDEAVEYYSVLRSIRAAESADVVLMLIDAAEGVTE 271

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                  I+       + +  K D    
Sbjct: 272 QDKRIAGIAHEAGRALVIVVNKWDKVEK 299



 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 15/157 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L ++ +AI     G TRD +    D  G+   + DT G+   +
Sbjct: 6   VAIVGRPNVGKSTLFNRLIQRRLAIEEPTAGVTRDRIYGRADWTGHEFWLIDTGGLTFEE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
           D + +E  ++  L +E A++I+ + ++ S           +        I    K++  +
Sbjct: 66  DKISREIHRQVKLAMEEANVIIFVVDVRSGPVTLDYEVAAMLRKTTKPVILAANKAESPN 125

Query: 334 TYTEEY-------DHLISSFTGEGLEELINKIKSILS 363
               E+         L S   G G  +L++++   L 
Sbjct: 126 FDMSEFYALGLGEPTLTSGAHGLGTGDLLDEVAKHLP 162


>gi|59800867|ref|YP_207579.1| GTP-binding protein EngA [Neisseria gonorrhoeae FA 1090]
 gi|8134430|sp|O87407|DER_NEIG1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|3722226|gb|AAC63508.1| essential Gc protein [Neisseria gonorrhoeae]
 gi|59717762|gb|AAW89167.1| putative GTP-binding protein [Neisseria gonorrhoeae FA 1090]
          Length = 485

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  +I  +  + +  E         ++G  N GKS+L NA+  +   I  D+ GTTRD +
Sbjct: 155 LIEEILENFPEPEAEEADAKHPVFAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDISRKLYFLDFAKFHFISALKERGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L   I++  +    K+P    + 
Sbjct: 335 DGLFESIQAAYNAAMIKMPTPKITR 359



 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 62/158 (39%), Gaps = 20/158 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                 ++ Y     E  H+IS   G+G+  LI +I  
Sbjct: 125 DRAVLAAEFYELALGE-PHVISGAHGDGVYYLIEEILE 161


>gi|15924465|ref|NP_371999.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927056|ref|NP_374589.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus N315]
 gi|21283093|ref|NP_646181.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus MW2]
 gi|49483662|ref|YP_040886.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486314|ref|YP_043535.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650430|ref|YP_186359.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus COL]
 gi|88195209|ref|YP_500010.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|148267959|ref|YP_001246902.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus JH9]
 gi|150394023|ref|YP_001316698.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus JH1]
 gi|151221596|ref|YP_001332418.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156979794|ref|YP_001442053.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus Mu3]
 gi|221140958|ref|ZP_03565451.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253315982|ref|ZP_04839195.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253732117|ref|ZP_04866282.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733278|ref|ZP_04867443.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006261|ref|ZP_05144862.2| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425539|ref|ZP_05601964.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428198|ref|ZP_05604596.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257430828|ref|ZP_05607210.1| small GTP-binding protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433587|ref|ZP_05609945.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436428|ref|ZP_05612475.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus M876]
 gi|257795470|ref|ZP_05644449.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9781]
 gi|258413278|ref|ZP_05681554.1| small GTP-binding protein [Staphylococcus aureus A9763]
 gi|258420615|ref|ZP_05683557.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9719]
 gi|258422494|ref|ZP_05685402.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9635]
 gi|258426810|ref|ZP_05688030.1| GTP-binding protein engA [Staphylococcus aureus A9299]
 gi|258444808|ref|ZP_05693137.1| GTP-binding protein engA [Staphylococcus aureus A8115]
 gi|258447358|ref|ZP_05695502.1| small GTP-binding protein [Staphylococcus aureus A6300]
 gi|258449757|ref|ZP_05697858.1| GTP-binding protein engA [Staphylococcus aureus A6224]
 gi|258451133|ref|ZP_05699168.1| GTP-binding protein engA [Staphylococcus aureus A5948]
 gi|258454573|ref|ZP_05702537.1| ribosome-associated GTPase EngA [Staphylococcus aureus A5937]
 gi|262048997|ref|ZP_06021876.1| GTP-binding protein EngA [Staphylococcus aureus D30]
 gi|262051644|ref|ZP_06023864.1| GTP-binding protein EngA [Staphylococcus aureus 930918-3]
 gi|269203100|ref|YP_003282369.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus ED98]
 gi|282892972|ref|ZP_06301207.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8117]
 gi|282904057|ref|ZP_06311945.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905821|ref|ZP_06313676.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282911052|ref|ZP_06318854.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914265|ref|ZP_06322052.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919188|ref|ZP_06326923.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282921722|ref|ZP_06329439.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9765]
 gi|282924372|ref|ZP_06332046.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus C101]
 gi|282928003|ref|ZP_06335612.1| ribosome-associated GTPase EngA [Staphylococcus aureus A10102]
 gi|283958239|ref|ZP_06375690.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024473|ref|ZP_06378871.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus 132]
 gi|293501290|ref|ZP_06667141.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510252|ref|ZP_06668960.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526847|ref|ZP_06671531.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295407224|ref|ZP_06817024.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8819]
 gi|295427983|ref|ZP_06820615.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296275328|ref|ZP_06857835.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus MR1]
 gi|297207866|ref|ZP_06924299.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297244648|ref|ZP_06928531.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8796]
 gi|300911951|ref|ZP_07129394.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304380942|ref|ZP_07363601.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|54037051|sp|P64060|DER_STAAN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|54037052|sp|P64061|DER_STAAW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|54040975|sp|P64059|DER_STAAM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|56748972|sp|Q6G988|DER_STAAS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|56749026|sp|Q6GGT6|DER_STAAR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|71151865|sp|Q5HFU8|DER_STAAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|122539535|sp|Q2FYG0|DER_STAA8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225860|sp|A7X2I1|DER_STAA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|172048892|sp|A6QH24|DER_STAAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037164|sp|A6U1U3|DER_STAA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037165|sp|A5IT03|DER_STAA9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|13701274|dbj|BAB42568.1| SA1307 [Staphylococcus aureus subsp. aureus N315]
 gi|14247246|dbj|BAB57637.1| GTP-binding protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204533|dbj|BAB95229.1| MW1364 [Staphylococcus aureus subsp. aureus MW2]
 gi|49241791|emb|CAG40482.1| putative GTPase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244757|emb|CAG43193.1| putative GTPase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284616|gb|AAW36710.1| GTP-binding protein, Era/TrmE family [Staphylococcus aureus subsp.
           aureus COL]
 gi|87202767|gb|ABD30577.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741028|gb|ABQ49326.1| small GTP-binding protein [Staphylococcus aureus subsp. aureus JH9]
 gi|149946475|gb|ABR52411.1| small GTP-binding protein [Staphylococcus aureus subsp. aureus JH1]
 gi|150374396|dbj|BAF67656.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156721929|dbj|BAF78346.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253724164|gb|EES92893.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728818|gb|EES97547.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271996|gb|EEV04134.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275039|gb|EEV06526.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278956|gb|EEV09575.1| small GTP-binding protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281680|gb|EEV11817.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284710|gb|EEV14830.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus M876]
 gi|257789442|gb|EEV27782.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9781]
 gi|257839842|gb|EEV64310.1| small GTP-binding protein [Staphylococcus aureus A9763]
 gi|257843563|gb|EEV67970.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9719]
 gi|257847251|gb|EEV71257.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9635]
 gi|257849971|gb|EEV73929.1| GTP-binding protein engA [Staphylococcus aureus A9299]
 gi|257850301|gb|EEV74254.1| GTP-binding protein engA [Staphylococcus aureus A8115]
 gi|257853549|gb|EEV76508.1| small GTP-binding protein [Staphylococcus aureus A6300]
 gi|257857005|gb|EEV79905.1| GTP-binding protein engA [Staphylococcus aureus A6224]
 gi|257861188|gb|EEV84001.1| GTP-binding protein engA [Staphylococcus aureus A5948]
 gi|257862956|gb|EEV85720.1| ribosome-associated GTPase EngA [Staphylococcus aureus A5937]
 gi|259160485|gb|EEW45509.1| GTP-binding protein EngA [Staphylococcus aureus 930918-3]
 gi|259162929|gb|EEW47492.1| GTP-binding protein EngA [Staphylococcus aureus D30]
 gi|262075390|gb|ACY11363.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus ED98]
 gi|269940966|emb|CBI49350.1| putative GTPase [Staphylococcus aureus subsp. aureus TW20]
 gi|282313759|gb|EFB44152.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316998|gb|EFB47372.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322333|gb|EFB52657.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324747|gb|EFB55057.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282331113|gb|EFB60627.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282590300|gb|EFB95380.1| ribosome-associated GTPase EngA [Staphylococcus aureus A10102]
 gi|282593984|gb|EFB98973.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9765]
 gi|282595675|gb|EFC00639.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764969|gb|EFC05094.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8117]
 gi|283470686|emb|CAQ49897.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790388|gb|EFC29205.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817155|gb|ADC37642.1| GTP-binding protein EngA [Staphylococcus aureus 04-02981]
 gi|290920405|gb|EFD97469.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096295|gb|EFE26556.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467196|gb|EFF09714.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus M809]
 gi|294967937|gb|EFG43966.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8819]
 gi|295128341|gb|EFG57975.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296887440|gb|EFH26340.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297178678|gb|EFH37924.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8796]
 gi|298694764|gb|ADI97986.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300886197|gb|EFK81399.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302751305|gb|ADL65482.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340528|gb|EFM06463.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312438122|gb|ADQ77193.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|312829865|emb|CBX34707.1| small GTP-binding domain protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129191|gb|EFT85186.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195372|gb|EFU25759.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|323439522|gb|EGA97243.1| GTP-binding protein EngA [Staphylococcus aureus O11]
 gi|323442239|gb|EGA99870.1| GTP-binding protein EngA [Staphylococcus aureus O46]
 gi|329314151|gb|AEB88564.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329723199|gb|EGG59730.1| ribosome biogenesis GTPase Der [Staphylococcus aureus subsp. aureus
           21189]
 gi|329727642|gb|EGG64098.1| ribosome biogenesis GTPase Der [Staphylococcus aureus subsp. aureus
           21172]
 gi|329731317|gb|EGG67683.1| ribosome biogenesis GTPase Der [Staphylococcus aureus subsp. aureus
           21193]
          Length = 436

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + SH  + +      +  ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD 
Sbjct: 154 DLLDAVVSHFGEEEEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   +G    + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 IDTEYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEQGKAVVIVVNKWDTVEK 301



 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + ++ AD+I+ +  +            +I +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNME 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             T+ YD           IS   G GL +L++ + S  
Sbjct: 126 MRTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVSHF 163


>gi|84387629|ref|ZP_00990646.1| GTP-binding protein EngA [Vibrio splendidus 12B01]
 gi|84377474|gb|EAP94340.1| GTP-binding protein EngA [Vibrio splendidus 12B01]
          Length = 493

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 27/190 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
            +     K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + D
Sbjct: 200 RLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREYVLID 259

Query: 274 TAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDF 322
           TAG+R   +I    EK  + +T   +E+A+++LLL +     S +++S            
Sbjct: 260 TAGVRRRKNINETVEKFSVVKTLKAIEDANVVLLLIDARDNISDQDLSLLGFALNAGRSI 319

Query: 323 IFIGTK-----SDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKF 366
           +    K     SD+     +E D           H IS+  G G+  L   ++    +  
Sbjct: 320 VIAVNKWDGLDSDVKDRVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYKSAT 379

Query: 367 KKLPFSIPSH 376
            ++  S+ + 
Sbjct: 380 TRVGTSVLTR 389



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 17/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD          +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHFSEHDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +     +++  K+        + +  K D   
Sbjct: 65  EGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDVAIAKHLRQLEKPSMLVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                 D            ++  G G+  LI+   +  +   K     +
Sbjct: 125 PDAASADFWQLGVEDMYQIAAAHGRGVTALIDLALNPFAEALKAENGEV 173


>gi|153001514|ref|YP_001367195.1| GTP-binding protein EngA [Shewanella baltica OS185]
 gi|160876250|ref|YP_001555566.1| GTP-binding protein EngA [Shewanella baltica OS195]
 gi|217972557|ref|YP_002357308.1| GTP-binding protein EngA [Shewanella baltica OS223]
 gi|304410031|ref|ZP_07391650.1| ribosome-associated GTPase EngA [Shewanella baltica OS183]
 gi|307302256|ref|ZP_07582014.1| ribosome-associated GTPase EngA [Shewanella baltica BA175]
 gi|166225855|sp|A6WQP3|DER_SHEB8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037160|sp|A9KWW9|DER_SHEB9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783166|sp|B8E9T1|DER_SHEB2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|151366132|gb|ABS09132.1| small GTP-binding protein [Shewanella baltica OS185]
 gi|160861772|gb|ABX50306.1| small GTP-binding protein [Shewanella baltica OS195]
 gi|217497692|gb|ACK45885.1| small GTP-binding protein [Shewanella baltica OS223]
 gi|304351440|gb|EFM15839.1| ribosome-associated GTPase EngA [Shewanella baltica OS183]
 gi|306914294|gb|EFN44715.1| ribosome-associated GTPase EngA [Shewanella baltica BA175]
 gi|315268439|gb|ADT95292.1| ribosome-associated GTPase EngA [Shewanella baltica OS678]
          Length = 488

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ EG    I DTAG+R 
Sbjct: 199 IKLAIIGKPNVGKSTLTNRILGEERVVVFDEPGTTRDSIYIPMEREGREYVIIDTAGVRR 258

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTK 328
              +    EK  + +T   VE+A+++LL+ +     +++++     +       +    K
Sbjct: 259 RSKVHQVIEKFSVIKTLKAVEDANVVLLIIDAREGIAEQDLGLLGFALNAGRALVIAVNK 318

Query: 329 SD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D     +      E D           H IS+  G G+  L   I+    +  +++  S
Sbjct: 319 WDGIDQGIKDRVKSELDRRLGFIDFARIHFISALHGTGVGHLFESIEEAYDSATRRVSTS 378

Query: 373 IPSH 376
           + + 
Sbjct: 379 MLTR 382



 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSD 330
           + +E +  +++   +E AD++L + +  +     ++S  ++          +  K D
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSREKTTFVVANKVD 121


>gi|127512226|ref|YP_001093423.1| GTP-binding protein EngA [Shewanella loihica PV-4]
 gi|166225856|sp|A3QCG6|DER_SHELP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|126637521|gb|ABO23164.1| small GTP-binding protein [Shewanella loihica PV-4]
          Length = 489

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I L+ +G    I DTAG+R 
Sbjct: 200 IKLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPLERDGQEYVIIDTAGVRR 259

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTK 328
             +  + VEK  + +T   VE+A+++LL+ +     +++++     +       +    K
Sbjct: 260 RSKVHETVEKFSVIKTLKAVEDANVVLLVVDAREGIAEQDLGLLGFALNVGRALVIAVNK 319

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D      +E                  H IS+  G G+  L   ++    +  +++  S
Sbjct: 320 WDGIDQDVKERVKSELDRRLGFIDFARIHFISALHGTGVGHLFESVEEAYESATRRVSTS 379

Query: 373 IPSH 376
           + + 
Sbjct: 380 MLTR 383



 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADYPGLTRDRKYGRAHLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
           + +E    +++   +E AD++L L +  +          E    +      +  K D
Sbjct: 65  EGIETRMAEQSLAAIEEADVVLFLTDARAGLTAADEAIAEHLRRREKTTFVVANKVD 121


>gi|319787003|ref|YP_004146478.1| ribosome-associated GTPase EngA [Pseudoxanthomonas suwonensis 11-1]
 gi|317465515|gb|ADV27247.1| ribosome-associated GTPase EngA [Pseudoxanthomonas suwonensis 11-1]
          Length = 465

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 111/301 (36%), Gaps = 65/301 (21%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND----- 202
              +  L      W+ KL      +   +D + EE V+   ++    D+L +        
Sbjct: 93  REGTSALDDEILSWLRKLARPTLLVVNKIDGTFEEAVRGEFARYGFADMLAVSAAHRQGL 152

Query: 203 -------ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
                  +     +G + E+  +    +I  +G  N GKS+L N +  ++  I +++PGT
Sbjct: 153 DDLHAEVLERLPEEGSVEELDNDPDRLRIAFVGRPNVGKSTLVNRVLGEERMIASEVPGT 212

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           TRD + +DL+ +G L ++ DTAGIR     ++ VEK  + +T   +E   + +L+ +   
Sbjct: 213 TRDSIAVDLERDGRLYRLIDTAGIRRKGKIEEAVEKFSVVKTLQAIERCQVAVLMLDATE 272

Query: 311 K--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSF 346
                               +    K D  +TY  E                    IS+ 
Sbjct: 273 GVTDQDATVLGAVLDAGRALVIAVNKWDGLTTYQREQAEALLERKLGFVPWAEAVRISAK 332

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
            G GL EL   I                    H  H S     +   S +E +  L+I A
Sbjct: 333 HGSGLRELFRAI--------------------HRAHAS----AIRTFSTSEVNKALEIAA 368

Query: 407 E 407
           E
Sbjct: 369 E 369



 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G  N GKS+LFNAL +   A+V D PG TRD       L+      + DT GI   
Sbjct: 5   VALVGRPNVGKSTLFNALTRSRDALVHDEPGVTRDRHYGVCRLDPDRPFLLVDTGGIAGD 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSD-- 330
           ++ +     ++       ADLIL + +          + +S+ +      + +  K D  
Sbjct: 65  EEGLAGATARQARAAAAEADLILFVVDGREGTSALDDEILSWLRKLARPTLLVVNKIDGT 124

Query: 331 LYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  E+          +S+   +GL++L  ++   L  +       
Sbjct: 125 FEEAVRGEFARYGFADMLAVSAAHRQGLDDLHAEVLERLPEEGSVEELD 173


>gi|282916742|ref|ZP_06324500.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus D139]
 gi|282319229|gb|EFB49581.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus D139]
          Length = 436

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + SH  + +      +  ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD 
Sbjct: 154 DLLDAVVSHFGEEEEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   EG    + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 IDTEYSYEGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEQGKAVVIVVNKWDTVEK 301



 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + ++ AD+I+ +  +            +I +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNME 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             T+ YD           IS   G GL +L++ + S  
Sbjct: 126 MRTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVSHF 163


>gi|259500656|ref|ZP_05743558.1| ribosome-associated GTPase EngA [Lactobacillus iners DSM 13335]
 gi|259168040|gb|EEW52535.1| ribosome-associated GTPase EngA [Lactobacillus iners DSM 13335]
          Length = 442

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D PG TRD +  +    G    + DT GI   D
Sbjct: 13  VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
           +++E++   +  + +  AD+I++L ++         +  +I +      I    K+D   
Sbjct: 73  NVIEEQIKTQAEIAINEADVIVMLSDVTGHVTNLDETIAKILYKAKKPIILAINKADNPE 132

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +S   G GL +L++ I S  +        +  
Sbjct: 133 QRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKFNGNNTTDDDNNI 182



 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 29/187 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +  I+G  N GKSS+ N++  ++  IV D+ GTTRD +    + +G    I DTAGI
Sbjct: 180 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 239

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326
           R    +    EK  + R+   +E +D+ +++ +     I   K I   +       I   
Sbjct: 240 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 299

Query: 327 TKSDLYSTYT-----------EEYDH-------LISSFTGEGLEELINKIKSILSNKFKK 368
            K D+ S  T           +E+ +        +S+ TG+ +E++++ +K++  N+ ++
Sbjct: 300 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 359

Query: 369 LPFSIPS 375
           +  S+ +
Sbjct: 360 IQSSVLN 366


>gi|297591047|ref|ZP_06949685.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus MN8]
 gi|297575933|gb|EFH94649.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp.
           aureus MN8]
          Length = 436

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + SH  + +      +  ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD 
Sbjct: 154 DLLDAVVSHFGEEEEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   +G    + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 IDTEYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEQGKAVVIVVNKWDTVEK 301



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + ++ AD+I+ +  +            +I +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNME 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             T+ YD           IS   G GL +L++ + S  
Sbjct: 126 MRTDVYDFYSLGFGEPYPISGAHGLGLGDLLDAVVSHF 163


>gi|29349244|ref|NP_812747.1| GTP-binding protein EngA [Bacteroides thetaiotaomicron VPI-5482]
 gi|253573091|ref|ZP_04850482.1| GTP-binding protein engA [Bacteroides sp. 1_1_6]
 gi|298384785|ref|ZP_06994344.1| ribosome-associated GTPase EngA [Bacteroides sp. 1_1_14]
 gi|37999664|sp|Q8A135|DER_BACTN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|29341152|gb|AAO78941.1| putative phosphoglycerate dehydrogenase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837314|gb|EES65414.1| GTP-binding protein engA [Bacteroides sp. 1_1_6]
 gi|298261929|gb|EFI04794.1| ribosome-associated GTPase EngA [Bacteroides sp. 1_1_14]
          Length = 437

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
           DDI E+E  K+  L VE AD+IL + ++ +           I    N   I +  K+D  
Sbjct: 65  DDIFEEEIRKQVLLAVEEADVILFVVDVMNGVTDLDMQVATILRRANSPVIMVANKTDNN 124

Query: 331 -LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
            L     E Y       + IS+ TG G  +L++ I S  + +  ++
Sbjct: 125 ELQYNAPEFYKLGLGDPYCISAITGSGTGDLMDLIVSKFNKETSEI 170



 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 33/226 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + I S  ++ +  EI+ +   +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD
Sbjct: 154 DLMDLIVSKFNK-ETSEILDDDIPRFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRD 212

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
            +    +  G+   + DTAGIR+ + +    E   + R+   +ENAD+ +L+ +     E
Sbjct: 213 SIYTRYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVVRSIRSIENADVCILMLDATRGVE 272

Query: 314 --------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL--S 363
                   +        + +  K DL               T + ++E    I+S     
Sbjct: 273 SQDLNILSLIQKNQKGLVVVINKWDLIED-----------KTAKMMKEFEATIRSRFAPF 321

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEM-------ASLNEKDCGL 402
             F  +  S  + +R L  L +     E        A LNE+   L
Sbjct: 322 VDFPIIFASALTKQRILKVLEEARNVYENRTTKIPTARLNEEMLPL 367


>gi|294102070|ref|YP_003553928.1| ribosome-associated GTPase EngA [Aminobacterium colombiense DSM
           12261]
 gi|293617050|gb|ADE57204.1| ribosome-associated GTPase EngA [Aminobacterium colombiense DSM
           12261]
          Length = 436

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 95/247 (38%), Gaps = 33/247 (13%)

Query: 159 GQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN 218
            +  D +   R +    L F     +     + +      L +   S +   +  E    
Sbjct: 118 NKLDDGIHEDRVYDAYSLGFEHVVGISALHKRYI----DDLMDMAVSLLPSDEEEERDPE 173

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             ++ I+G  N GKSSL NALA  D  +V+DIPGTTRD     ++++    +  DTAG+R
Sbjct: 174 EIRVSIVGRPNVGKSSLVNALAGSDRVLVSDIPGTTRDATDTVIEMKEGKFRFIDTAGLR 233

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGT 327
           +   I    E     RT   V+ +D+ LL+ + +                K    I +  
Sbjct: 234 KKSRIDSDIEYYSFVRTLQAVDRSDVALLVMDASEPTTDQDKKMAAQVIEKGKGLILLIN 293

Query: 328 KSDLYSTYTEEYDHLI------------------SSFTGEGLEELINKIKSILSNKFKKL 369
           K D      +  D +                   S+ T  GL +L   IK++  N+ +++
Sbjct: 294 KWDTLEAADKLGDEMRKRVRDEMPFLSHAPLLFVSALTKRGLNKLTQTIKNVQENRSRRI 353

Query: 370 PFSIPSH 376
             +  + 
Sbjct: 354 GTTELNR 360



 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSLFN +  +  AIV D+PG TRD +  + + +G    I DT G+   D
Sbjct: 4   IAIVGRPNVGKSSLFNRILGRREAIVDDMPGVTRDRIYGETEWKGRQFYIVDTGGLLVRD 63

Query: 282 DIVEKEGI-KRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD-- 330
           +    EGI K+  L +E + +IL + +              I        I +  K D  
Sbjct: 64  EHPLVEGIRKQATLAIEESHVILFVIDGFNGPNWMDEDVAHILRRSGKPVIVVANKLDDG 123

Query: 331 -----LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILS 363
                +Y  Y+  ++H+  IS+     +++L++   S+L 
Sbjct: 124 IHEDRVYDAYSLGFEHVVGISALHKRYIDDLMDMAVSLLP 163


>gi|330807651|ref|YP_004352113.1| GTP-binding protein engA [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375759|gb|AEA67109.1| GTP-binding protein engA [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 490

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   I    EK  + +T   +++A++++ + +               +       +  
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D  +    ++                 H IS+  G G+  L   +++   +   + 
Sbjct: 313 INKWDGMTPSERDFVKIELQRRLFFVDFADIHFISALHGTGVGNLYASVQNSFKSAVTRW 372

Query: 370 PFS 372
           P +
Sbjct: 373 PTN 375



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRTYILVDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ L +E AD++L L +  +          E    +N     +  K D
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFLVDAKAGFTAADQMIAEHLRKRNKRSYVVANKVD 121


>gi|332519774|ref|ZP_08396238.1| ribosome-associated GTPase EngA [Lacinutrix algicola 5H-3-7-4]
 gi|332044333|gb|EGI80527.1| ribosome-associated GTPase EngA [Lacinutrix algicola 5H-3-7-4]
          Length = 435

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 29/184 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 177 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFDFNLVDTAGIRKK 236

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
             +    E   + R+   +E++D+ LL+ + N   +        ++       + +  K 
Sbjct: 237 SKVKEDLEFYSVMRSVRAIEHSDVCLLVVDANRGFDGQVQNIFWLAERNRKGIVILVNKW 296

Query: 330 DLYST------------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           DL                     +T+     IS+ T + + + I     +  N+ KK+  
Sbjct: 297 DLVEKDNKTTNEFEKYIRSQIEPFTDVPIVFISALTKQRIYKAIETAVEVYKNRSKKIKT 356

Query: 372 SIPS 375
           S+ +
Sbjct: 357 SVLN 360



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      D  G    + DT G ++ +
Sbjct: 5   VAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGKEFSLIDTGGYVKGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E E  K+  L +E AD I+ + ++ +           +          +  K D  
Sbjct: 65  DDIFEAEIDKQVELAIEEADAIIFMVDVEAGVTGMDEDVARLLRKVTKPVFLVVNKVDNG 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKI 358
               +  +           I+S  G G  +L++ +
Sbjct: 125 KRAEDAVEFYSLGLGDYFTIASINGSGTGDLLDAL 159


>gi|255693537|ref|ZP_05417212.1| ribosome-associated GTPase EngA [Bacteroides finegoldii DSM 17565]
 gi|260620675|gb|EEX43546.1| ribosome-associated GTPase EngA [Bacteroides finegoldii DSM 17565]
          Length = 437

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEAAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +DDI E+E  K+  L VE AD+IL + ++ +           I        I +  K+
Sbjct: 62  VNSDDIFEEEIRKQVLLAVEEADVILFVVDVMNGVTDLDMQVAAILRRAKSPVIMVANKT 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D   L     E Y       + +S+ TG G  +L++ I S    +  ++
Sbjct: 122 DNHELQYNAPEFYKLGLGDPYCVSAITGSGTGDLMDLIVSKFKKETSEI 170



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 90/206 (43%), Gaps = 32/206 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + I S   + +  EI+ +   +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD
Sbjct: 154 DLMDLIVSKFKK-ETSEILDDDIPRFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRD 212

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
            +    +  G+   + DTAGIR+   +    E   + R+   +E +D+ +L+ +     E
Sbjct: 213 SIYTRYNKFGFDFYLVDTAGIRKKSKVNEDLEYYSVIRSIRAIEGSDVCILMLDATRGIE 272

Query: 314 --------ISFPKNIDFIFIGTKSDL-------------------YSTYTEEYDHLISSF 346
                   +        + +  K DL                   ++ + +      S+ 
Sbjct: 273 SQDLNIFSLIQKNQKGLVVVINKWDLVEDKSVKVQKTFEEAVRSRFAPFVDFPIIFASAL 332

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS 372
           T + + +++ + +++  N+  K+P +
Sbjct: 333 TKQRILKVLEEARNVYENRTTKIPTA 358


>gi|225570488|ref|ZP_03779513.1| hypothetical protein CLOHYLEM_06589 [Clostridium hylemonae DSM
           15053]
 gi|225160685|gb|EEG73304.1| hypothetical protein CLOHYLEM_06589 [Clostridium hylemonae DSM
           15053]
          Length = 442

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +   ++    +    E      +I I+G  N GKSS+ N L  +   IV+D+ GTTRD 
Sbjct: 156 DMLERVAQFFPEHSSEEEDDERPRIAIVGKPNVGKSSIVNKLLGEQRVIVSDVAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++   G      DTAG+R    I    E+  I RT   VE AD++L++ +       
Sbjct: 216 IDTEIIHGGREYVFIDTAGLRRKSKIKEELERYSIIRTVTAVERADVVLVVIDAAEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE---EYDH---------------LISSFTG 348
                  I+  +    I +  K D      +   EY+H                +S+ TG
Sbjct: 276 QDAKIAGIAHERGKGIIIVVNKWDAIEKNDKTMREYEHRVRQVLSFMPYAEIMYVSAETG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + I  ++ N+  ++   + +
Sbjct: 336 QRLNKLYDMIDMVIENQTLRVATGVLN 362



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 72/161 (44%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA + ++IV D PG TRD +  ++        + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYAEVSWLDKEFTLIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D++  +  ++  + ++ AD+I+ + ++            ++        + +  K D +
Sbjct: 66  KDVILSQMREQAQIAIDTADVIVFITDVRQGLVDSDSKVADMLRRSGKPVVLVVNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILS 363
             +  +              +S+ +  G+ +++ ++     
Sbjct: 126 DKFMPDVYEFYNLGIGDPVPVSAASRLGIGDMLERVAQFFP 166


>gi|229918701|ref|YP_002887347.1| GTP-binding protein EngA [Exiguobacterium sp. AT1b]
 gi|229470130|gb|ACQ71902.1| small GTP-binding protein [Exiguobacterium sp. AT1b]
          Length = 436

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 82/207 (39%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +     +    E   +  +  ++G  N GKSSL N++  ++  IV++I GTTRD 
Sbjct: 154 DLLDQVFELAPEKDEYEYNEDVIQFSLIGRPNVGKSSLTNSILGEERVIVSNIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +      +G    I DTAG+R+   +    E+  + R    +E ++++L++ +       
Sbjct: 214 IDTPFTRDGQEYVIIDTAGMRKRGKVYESTERYSVMRAQKAIERSNVVLVVLDGEEGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
                  ++       + +  K D      +                       +S+ T 
Sbjct: 274 QDKRVAGLAHEAGKAIVIVVNKWDAVEKDDKTMKKMEEKIRQEFLFLDYAPVVFLSALTS 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L+ L+  IK +     +++  S+ +
Sbjct: 334 KRLQTLLPVIKQVAETHRRRISTSVLN 360



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 17/163 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +    V+IV D PG TRD +    +       + DT GI   D
Sbjct: 6   VAIVGRPNIGKSTIFNRIIGDRVSIVDDKPGVTRDRIYGTGEWLNRKFHLIDTGGIEVGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           + +  +   +  L ++ AD+I+ +      I +  E    + F  N   +    K D + 
Sbjct: 66  EPLLVQMRHQAELAIDEADVIIFMVNGREGITAADEEVANLLFRSNKPIVLAVNKVDNFE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFK 367
                Y+           IS   G GL +L++++  +   K +
Sbjct: 126 MRDLMYEFYSLGFGDPFPISGTHGLGLGDLLDQVFELAPEKDE 168


>gi|332883522|gb|EGK03805.1| GTP-binding protein engA [Dysgonomonas mossii DSM 22836]
          Length = 468

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 18/176 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L +   AIV +  GTTRD     ++  G    + DT G +
Sbjct: 33  GNLVAIVGRPNVGKSTLFNRLTESRQAIVDETSGTTRDRQYGKVEWGGQDFSLVDTGGWV 92

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
             ++D+ E E  K+  + +E AD+IL + ++        +S   +        + +  K+
Sbjct: 93  VNSEDVFENEINKQVAIAIEEADVILFMVDVMNGLTDLDSSVANMLRRSKKPILLVSNKA 152

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           D ++ + +  +           IS+  G G  +L++ I +  + K ++        
Sbjct: 153 DNFNLHAQSAEFYALGLGDPINISAINGSGTGDLLDVIITKFTKKSEEEHLEDIPR 208



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 30/204 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I +  ++    E + +  +I I+G  NAGKSSL NAL  ++  IVT+I GTTRD 
Sbjct: 185 DLLDVIITKFTKKSEEEHLEDIPRIAIVGRPNAGKSSLVNALMDEERNIVTNIAGTTRDS 244

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    D       + DTAGIR+   +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 245 IYTRFDKFNLDFYLVDTAGIRKKGKVTEDLEYYSVIRSIKAIENSDVCVLMIDATQGIES 304

Query: 314 -------ISFPKNIDFIFIGTKSDLYST-------------------YTEEYDHLISSFT 347
                  +        +    K DL                      +T+      S+ T
Sbjct: 305 QDMNIFSLIQKNRKGLVVCVNKWDLVENKELIVIKTFENAIRERLAPFTDFPIIFASAMT 364

Query: 348 GEGLEELINKIKSILSNKFKKLPF 371
            + + +++   K +   +  K+P 
Sbjct: 365 KQRILKVLETAKEVYGRRKTKIPT 388


>gi|195952865|ref|YP_002121155.1| small GTP-binding protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932477|gb|ACG57177.1| small GTP-binding protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 429

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 25/204 (12%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L  +I+  +   +  E   +  K+  +G  N+GKSSL N++ K+D  IV++I GTTRD 
Sbjct: 150 ELLEEITKDLKAMEELEEKADFIKLSFVGKPNSGKSSLLNSILKQDRVIVSNIAGTTRDA 209

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SK 311
           + ++   EG    + DTAGIR     D  VE   + R+   +E +D+  L+ +     S+
Sbjct: 210 VDVEFSYEGKDFILVDTAGIRRPSNIDYGVEFFAVNRSLEAIEKSDVCALVIDATEGVSR 269

Query: 312 KEISFP-----KNIDFIFIGTKSDLYSTYTEEYDH--------------LISSFTGEGLE 352
           +++        K    I +  K DL         H               +S+  G  + 
Sbjct: 270 QDMRLASLVNRKGKGLIVVLNKIDLIKDIEALKKHVDKKLEFVYFAPRVYVSAKEGINVF 329

Query: 353 ELINKIKSILSNKFKKLPFSIPSH 376
            ++ K   I     K +  S  + 
Sbjct: 330 SILQKAIDIYEEYSKPIKTSYVNR 353



 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 15/165 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KIVI G +N GKS+LFN ++K+ ++IV +IPG TRDV+      +  + K+ DT G+ ++
Sbjct: 3   KIVITGRANVGKSTLFNKISKRRISIVENIPGITRDVIESKAVFQDKVFKLVDTGGLTDS 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
            + + +    +     + A  I+ + +     +   K+I+   +P          K+D  
Sbjct: 63  KEEISQAIRDKVLKLYKEAYKIIFVVDGKTGLMPEDKDIAKLLYPYKEKVYVAVNKTDSK 122

Query: 333 STYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                E+          IS+  G G+ EL+ +I   L    +   
Sbjct: 123 KASASEFYELGFDNVFEISATHGTGVFELLEEITKDLKAMEELEE 167


>gi|193215037|ref|YP_001996236.1| GTP-binding protein EngA [Chloroherpeton thalassium ATCC 35110]
 gi|238692727|sp|B3QZ96|DER_CHLT3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|193088514|gb|ACF13789.1| small GTP-binding protein [Chloroherpeton thalassium ATCC 35110]
          Length = 435

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 89/229 (38%), Gaps = 31/229 (13%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +E    L++  +   L     Q   KL     +  + LD                  +  
Sbjct: 111 SEKTVFLAVNKVDNNLMESDAQLFRKLGLSEPYFVSALDG---------------RGVAE 155

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L + + +HI +    E   +  K+ ++G  N GKSS  NA+  ++  IVTDIPGTTRD +
Sbjct: 156 LLDAVIAHIPEDDAPESD-DTVKLTVIGRPNVGKSSFVNAILGQNRQIVTDIPGTTRDAV 214

Query: 259 TIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE-- 313
                  G    + DTAG+R     DD +E     RT   +E  D+ ++L +     E  
Sbjct: 215 DSRFKRNGQDFLLIDTAGLRRKAKVDDNIELFSALRTEKAIERCDVAIILLDATQGLENQ 274

Query: 314 ------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  +  K    +    K DL     E+ D    ++     EEL N
Sbjct: 275 DLKVINAAAQKKRGMVIAVNKWDLI----EKDDKTAIAYEKRLREELRN 319



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  K VAIV D+PG TRD    + +  G    + DT G   T 
Sbjct: 5   VAIVGRPNVGKSTLFNRILNKRVAIVDDVPGVTRDRNFSEAEWCGKQFSLIDTGGYSRTG 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK-KEISF---------PKNIDFIFIGTKSD- 330
           D      ++++ + ++ A++I+L+ ++ +   +I                      K D 
Sbjct: 65  DTFSAAVLEQSLIALQEANIIILVVDLRTGITDIDLEITELLRKQASEKTVFLAVNKVDN 124

Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                   L+        + +S+  G G+ EL++ + + +            
Sbjct: 125 NLMESDAQLFRKLGLSEPYFVSALDGRGVAELLDAVIAHIPEDDAPESDDTV 176


>gi|326336190|ref|ZP_08202362.1| ribosome-associated GTPase EngA [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325691699|gb|EGD33666.1| ribosome-associated GTPase EngA [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 434

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 29/178 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  ++  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDAIDTRYNRFGFEFNLVDTAGIRRK 235

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
             +    E   + R+   +E++D+ LLL +     E        ++       + +  K 
Sbjct: 236 AKVKEDLEFYSVMRSVRAIEHSDVCLLLVDATRGFEGQDANIFWLAQRNKKGVVILVNKW 295

Query: 330 DLYST------------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           DL                     +T+     IS+ T + + + I K   +  N+ +++
Sbjct: 296 DLVEKDTHTTKHFEEGIRKIIAPFTDVPIIFISALTKQRIYKAIEKAVEVYQNRSQRI 353



 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  I G TRD      D  G    + DT G +   
Sbjct: 5   VAIVGRPNVGKSTFFNRLVQRREAIVDSISGVTRDRHYGKTDWNGRDFSVIDTGGYVAGG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DD+ +KE  K+  L +E AD I+ L ++ S          ++             K D  
Sbjct: 65  DDVFQKEIDKQVNLAIEEADAIIFLTDVESGIMSTDEEIAQLLRRSKKPTFLAVNKVDNT 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               +  +           ISS  G G  EL++ +  +L  + K+   ++P
Sbjct: 125 KRAMDANEFYALGFEELFPISSVNGSGTGELLDAVVKVLPEEEKEEETTLP 175


>gi|221632763|ref|YP_002521985.1| GTP-binding protein EngA [Thermomicrobium roseum DSM 5159]
 gi|254783175|sp|B9KZ43|DER_THERP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|221155859|gb|ACM04986.1| ribosome-associated GTPase EngA [Thermomicrobium roseum DSM 5159]
          Length = 460

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 12/154 (7%)

Query: 197 LFLKNDISSHISQGKL-GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
             L + I+  + + +  G       KI I+G  N GKS+L NA+  +   IV+ IPGTTR
Sbjct: 160 ADLLDAIAERLPRREEDGTAEAEAPKIAIVGRPNVGKSALLNAILGQPRQIVSPIPGTTR 219

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK- 311
           D +  +L  +G  + + DTAGIR    I   +E+  I R    +E +D+ +L+ +     
Sbjct: 220 DAVDTELVWKGQPIVLIDTAGIRRPGRIERGIERYSILRAERAIERSDVAILVVDATEPF 279

Query: 312 -------KEISFPKNIDFIFIGTKSDLYSTYTEE 338
                             +    K DL+     E
Sbjct: 280 THQDQAVAGKVLDAKKGIVVAINKWDLFEHMEGE 313



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 72/173 (41%), Gaps = 24/173 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           ++ I+G  N GKS+LFN L ++  AIV ++PGTTRD +   ++       + DT G+   
Sbjct: 5   QVAIVGRPNVGKSTLFNRLLRQRRAIVEEVPGTTRDRIYGIVEWNDLRFGLFDTGGLLTE 64

Query: 278 ---RETDDIVEKEGIK-RTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
                + +    E  K +  L +  ADL++ + + ++          +     +   + +
Sbjct: 65  EEIERSSERELVEATKAQAELAIAEADLVIFVVDASAGPTAGDWEVADFLRRTDKPILLV 124

Query: 326 GTKSDLYSTYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K++                     +S+  G G+ +L++ I   L  + +  
Sbjct: 125 ANKAESREREFNALQFYELGLGDPIPVSALHGRGIADLLDAIAERLPRREEDG 177


>gi|218708645|ref|YP_002416266.1| GTP-binding protein EngA [Vibrio splendidus LGP32]
 gi|254783178|sp|B7VJU2|DER_VIBSL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|218321664|emb|CAV17618.1| GTP-binding protein engA [Vibrio splendidus LGP32]
          Length = 493

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 100/239 (41%), Gaps = 30/239 (12%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L  +     A+   +E  +V + +  E   +      D +   ++ +   +     K+ I
Sbjct: 154 LIDLALNPFAEALKAENGEVSDLTEFEDEEEEQV---DFTEEEAEEEFKRLQDQPIKLAI 210

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R   +I 
Sbjct: 211 IGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRRRKNIN 270

Query: 285 ---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKS---- 329
              EK  + +T   +E+A+++LLL +     S +++S            +    K     
Sbjct: 271 ETVEKFSVVKTLKAIEDANVVLLLIDARENISDQDLSLLGFALNAGRSIVIAVNKWDGLD 330

Query: 330 -DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            D+     +E D           H IS+  G G+  L   ++    +   ++  S+ + 
Sbjct: 331 NDVKDRVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYKSATTRVGTSVLTR 389



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 17/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD          +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHFSEHDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +     +++  K+        + +  K D   
Sbjct: 65  EGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDVAIAKHLRQLEKPSMLVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                 D            ++  G G+  LI+   +  +   K     +
Sbjct: 125 PDAASADFWQLGVEDMYQIAAAHGRGVTALIDLALNPFAEALKAENGEV 173


>gi|312871411|ref|ZP_07731506.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 3008A-a]
 gi|311093064|gb|EFQ51413.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 3008A-a]
          Length = 435

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D PG TRD +  +    G    + DT GI   D
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
           +++E++   +  + +  AD+I++L ++         +  +I +      I    K+D   
Sbjct: 66  NVIEEQIKTQAEIAINEADVIVMLSDVTGHVTNLDETIAKILYKAKKPIILAINKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +S   G GL +L++ I S  +        +  
Sbjct: 126 QRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKFNGNNTTDDDNNI 175



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 89/187 (47%), Gaps = 29/187 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +  I+G  N GKSS+ N++  ++  IV ++ GTTRD +    + +G    I DTAGI
Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVAEMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326
           R    +    EK  + R+   +E +D+ +++ +     I   K I   +       I   
Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292

Query: 327 TKSDLYSTYT-----------EEYDH-------LISSFTGEGLEELINKIKSILSNKFKK 368
            K D+ S  T           +E+ +        +S+ TG+ +E++++ +K++  N+ ++
Sbjct: 293 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352

Query: 369 LPFSIPS 375
           +  S+ +
Sbjct: 353 IQSSVLN 359


>gi|302191345|ref|ZP_07267599.1| GTP-binding protein EngA [Lactobacillus iners AB-1]
 gi|309804160|ref|ZP_07698238.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 11V1-d]
 gi|312872309|ref|ZP_07732379.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2062A-h1]
 gi|312873983|ref|ZP_07734019.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2052A-d]
 gi|325912827|ref|ZP_08175205.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 60-B]
 gi|329921288|ref|ZP_08277726.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 1401G]
 gi|308163743|gb|EFO66012.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 11V1-d]
 gi|311090532|gb|EFQ48940.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2052A-d]
 gi|311092132|gb|EFQ50506.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2062A-h1]
 gi|325477820|gb|EGC80954.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 60-B]
 gi|328934580|gb|EGG31084.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 1401G]
          Length = 435

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D PG TRD +  +    G    + DT GI   D
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
           +++E++   +  + +  AD+I++L ++         +  +I +      I    K+D   
Sbjct: 66  NVIEEQIKTQAEIAINEADVIVMLSDVTGHVTNLDETIAKILYKAKKPIILAINKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +S   G GL +L++ I S  +        +  
Sbjct: 126 QRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKFNGNNTTDDDNNI 175



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 29/187 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +  I+G  N GKSS+ N++  ++  IV D+ GTTRD +    + +G    I DTAGI
Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326
           R    +    EK  + R+   +E +D+ +++ +     I   K I   +       I   
Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292

Query: 327 TKSDLYSTYT-----------EEYDH-------LISSFTGEGLEELINKIKSILSNKFKK 368
            K D+ S  T           +E+ +        +S+ TG+ +E++++ +K++  N+ ++
Sbjct: 293 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352

Query: 369 LPFSIPS 375
           +  S+ +
Sbjct: 353 IQSSVLN 359


>gi|78223518|ref|YP_385265.1| GTP-binding protein Era [Geobacter metallireducens GS-15]
 gi|123571481|sp|Q39T84|ERA_GEOMG RecName: Full=GTPase Era
 gi|78194773|gb|ABB32540.1| GTP-binding protein Era [Geobacter metallireducens GS-15]
          Length = 298

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 81/193 (41%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N +  + + I +D P TTR+ +    ++ G  +   DT G
Sbjct: 7   RSGF-VSIIGRPNVGKSTLLNRILGEKIVITSDKPQTTRNRIQGIHNVPGAQIVFIDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
           I +    + K  ++     +   DL+L L E N K         ++          +  K
Sbjct: 66  IHQARSRLNKYMVEVALSAIREVDLVLFLVEANQKPGEQEQEIIDVLAGATAPVFLVINK 125

Query: 329 SDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL          + Y + Y       IS+ TG+G++ L+  ++  L       P  I +
Sbjct: 126 VDLTEKGAVLERIAAYKDRYPFREIVPISAGTGDGVDHLVELVRKALPQGPVYFPDDILT 185

Query: 376 HKRHLYHLSQTVR 388
                +  ++ +R
Sbjct: 186 DVPERFIAAEIIR 198


>gi|330898613|gb|EGH30032.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 152

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 59/136 (43%), Gaps = 12/136 (8%)

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT--------GEGLEELINKIKSILSNKF 366
             P       I  K+DL     +    +    T        GEGLE L   +K+ +    
Sbjct: 19  QRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVTINLSAKSGGEGLELLREHLKACM-GYE 77

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424
           +    S  + +RHL  L      LE   A L     G +++AE+LR A  +LG+ITG   
Sbjct: 78  QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAGAG-ELLAEDLRQAQQALGEITGAFS 136

Query: 425 VEQLLDIIFSKFCIGK 440
            + LL  IFS FCIGK
Sbjct: 137 SDDLLGRIFSSFCIGK 152


>gi|284048574|ref|YP_003398913.1| ribosome-associated GTPase EngA [Acidaminococcus fermentans DSM
           20731]
 gi|283952795|gb|ADB47598.1| ribosome-associated GTPase EngA [Acidaminococcus fermentans DSM
           20731]
          Length = 443

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 34/189 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKSS+FN +  +  +IV+D+ GTTRD + + ++ +G      DTAG+R 
Sbjct: 178 IKVAIIGRPNVGKSSIFNDIIGQTRSIVSDVAGTTRDAIDVPVEKDGQTYLFIDTAGMRR 237

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFIG 326
               D+ +EK  I RT   V+ +D++LL+  +N+ + I          +       + + 
Sbjct: 238 KGKIDEPIEKYSIIRTLRAVDRSDVVLLV--LNAVEGITEQDKKIAGYAHEAGKGIVIVV 295

Query: 327 TKSDLY--------STYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFK 367
            K DLY          +T++  H            +S+ T + +  L   IK        
Sbjct: 296 NKWDLYPNKTVMSTEEFTKQIRHELIFMPYANVVYVSALTQQRISRLPEMIKDAAEANAM 355

Query: 368 KLPFSIPSH 376
           ++  S+ + 
Sbjct: 356 RISTSVLNQ 364



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN  A   ++IV D PG TRD L  D +       + DT GI  + 
Sbjct: 6   VAIVGRPNVGKSTLFNIFADSRISIVEDTPGVTRDRLYADAEWLDRKFTMVDTGGIEMQN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPK-----NIDFIFIGTKSDLY 332
            D +     ++  + V  AD+IL + +  +     ++   K         +    K+D  
Sbjct: 66  TDSIAVSIRQQAEVAVREADVILFVCDARTGITNDDMEVAKMLRQSRKPVVLAVNKADTP 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
               E Y+            S+     L +L++ +     
Sbjct: 126 KQEAEAYEFYNLGIGEPYLISASNRLNLGDLLDAVVEKFP 165


>gi|146312646|ref|YP_001177720.1| GTP-binding protein EngA [Enterobacter sp. 638]
 gi|166920100|sp|A4WD89|DER_ENT38 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145319522|gb|ABP61669.1| small GTP-binding protein [Enterobacter sp. 638]
          Length = 490

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 94/229 (41%), Gaps = 34/229 (14%)

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           +++  EE D       +    +   +  +     Q           K+ I+G  N GKS+
Sbjct: 165 EINPPEEIDEDAAYWAQFEEAVEGKEEPVDDFNPQ-------DLPIKLAIVGRPNVGKST 217

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKR 291
           L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+     D+VEK  + +
Sbjct: 218 LTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKRGKITDVVEKFSVIK 277

Query: 292 TFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEE----- 338
           T   +E+A++++L+ +     S +++S            + +  K D  S    E     
Sbjct: 278 TLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSNDVREQVKEM 337

Query: 339 -----------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                        H IS+  G G+  L   ++    +  ++   ++ + 
Sbjct: 338 LDFRLGFIDFARIHFISALHGSGVGNLFESVREAYDSSTRRQSTAMLTR 386



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 18/184 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADIVLFMVDARAGLMPADTAIAKHLRSREKPTFLVANKTDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                 D           I++  G G+  L+  +  +        P  I     +     
Sbjct: 125 ADQAVADFWALGLGEIYPIAASHGRGVTSLLETVL-MPWVDEINPPEEIDEDAAYWAQFE 183

Query: 385 QTVR 388
           + V 
Sbjct: 184 EAVE 187


>gi|119476373|ref|ZP_01616724.1| predicted GTPase [marine gamma proteobacterium HTCC2143]
 gi|119450237|gb|EAW31472.1| predicted GTPase [marine gamma proteobacterium HTCC2143]
          Length = 466

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 30/203 (14%)

Query: 197 LFLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             L +D+          E  ++   G KI I+G  N GKS+L N L  ++  IV D PGT
Sbjct: 152 RNLLDDMLLQFPDSNQEEEEQDKHRGTKIAIIGRPNVGKSTLVNRLLGEERVIVFDHPGT 211

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINS 310
           TRD + ID + EG    + DTAG+R   ++    EK  I +    +++A++++L+ +   
Sbjct: 212 TRDSIYIDYEREGQPYTLIDTAGVRRRKNVRETVEKFSIVKALKAIDDANVVVLVMDAAE 271

Query: 311 ---KKEI-----SFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSF 346
               +++     +       +    K D                          H IS+ 
Sbjct: 272 GLVDQDLHLLGHAIDAGRALVIALNKWDGLDIDHKTWVKRELERRLQFIDFAEIHFISAL 331

Query: 347 TGEGLEELINKIKSILSNKFKKL 369
            G G+  L   +     +  +KL
Sbjct: 332 HGTGVGHLYESVDKAYRSSMEKL 354



 Score = 90.7 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 17/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   A+V ++PG TRD    +  +      + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKTRDALVANLPGLTRDRKYGEARVGSRRFIVIDTGGITGEE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYS 333
           + ++    +++ L V+ AD +  L +  +                +    +I  K D   
Sbjct: 65  EGIDVAMAQQSMLAVDEADAVFFLCDSRAGLTAGDHALANKLRQSDKPVYYIANKIDGVD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                 D           +++  G+G+  L++ +     +  ++   
Sbjct: 125 PNVAMADFYQLGIEKLYPMTATHGKGVRNLLDDMLLQFPDSNQEEEE 171


>gi|71893425|ref|YP_278871.1| GTP-binding protein EngA [Mycoplasma hyopneumoniae J]
          Length = 434

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 29/186 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ ++G  NAGKSSL N L  ++ +I+++IPGTTRD ++    + G  ++I DTAGIR+
Sbjct: 172 FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRK 231

Query: 280 TDDIVE---KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              + E        R F  ++ ADL L+L +               +F +N   I +  K
Sbjct: 232 KSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFDLRIAGYAFERNKPIILVINK 291

Query: 329 SDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL    T                        IS+ TGE + +LI+ I  + +N  KK+ 
Sbjct: 292 WDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQVKNNLEKKIS 351

Query: 371 FSIPSH 376
            ++ + 
Sbjct: 352 TNLLNQ 357



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 73/167 (43%), Gaps = 15/167 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G SN GKS+LFN +A K ++I   +PG TRD +  ++    +   + DT GI+  +
Sbjct: 6   VALVGKSNVGKSTLFNRIAGKKISITNPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIEN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
           +  +     +  + +E AD+++ + +   + +        +        I +  K +   
Sbjct: 66  ENFQDLVRIQVQIALEEADILVWVLDGTKEIDSEDHFVLSLLRKSKKKIILVANKLENNK 125

Query: 334 TYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           ++         E    IS+  G G+ + ++++    + K  K     
Sbjct: 126 SFDISLFELGFEKVFPISALHGHGVGDFLDELVGNFNKKNFKNEIFF 172


>gi|257791089|ref|YP_003181695.1| small GTP-binding protein [Eggerthella lenta DSM 2243]
 gi|317488189|ref|ZP_07946760.1| ribosome-associated GTPase EngA [Eggerthella sp. 1_3_56FAA]
 gi|325830789|ref|ZP_08164173.1| ribosome biogenesis GTPase Der [Eggerthella sp. HGA1]
 gi|257474986|gb|ACV55306.1| small GTP-binding protein [Eggerthella lenta DSM 2243]
 gi|316912694|gb|EFV34232.1| ribosome-associated GTPase EngA [Eggerthella sp. 1_3_56FAA]
 gi|325487196|gb|EGC89639.1| ribosome biogenesis GTPase Der [Eggerthella sp. HGA1]
          Length = 438

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 112/280 (40%), Gaps = 27/280 (9%)

Query: 125 LLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
             EA+ +  L+  +T       ++  +  + S      ++KL       E    +     
Sbjct: 81  ANEADVILFLVDGKTGVNADDEAVARILRKTSKPVFLVVNKLDTPNRMDEVWEFYQLGLG 140

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKL--GEIIRNGYKIVILGHSNAGKSSLFNALAK 241
                S    +    L +++ + + +  L       +G  + I+G  NAGKSSL N L  
Sbjct: 141 DPWPVSAMHGHGTGDLLDEVVNELKKVDLPADADEEDGINVAIIGRPNAGKSSLTNKLTA 200

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVEN 298
            D +IV+D+ GTTRD +   +  +G    I DTAG+R     D+ VE  G  R    ++ 
Sbjct: 201 NDRSIVSDVAGTTRDAIDTHIVHDGQRYTIVDTAGLRRKSQIDEDVEYYGFVRAMRAIDR 260

Query: 299 ADLILLLKEI-----NSKKEI---SFPKNIDFIFIGTKSDLY---STYTEEYDHLISSFT 347
           A++ LL+ +      +  + +   +  +    + +  K DL        E  + +    T
Sbjct: 261 ANVALLVIDSTLGLTDQDQRVAGFAAERGCAMVIVLNKWDLIEGPEAKAEIRERIADRLT 320

Query: 348 GEGLEELI----------NKIKSILSNKFKKLPFSIPSHK 377
             G   +I          ++I   ++  ++    +IP+++
Sbjct: 321 FVGYAPVIAISALTGKKVDRIWDAVNAAYENYSQTIPTNR 360



 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+  N +A+ D AIV ++ G TRD    + D  G   K+ DT GI    
Sbjct: 6   VAVVGRPNVGKSTFVNRIAQADEAIVHEMRGVTRDRSYHEADWNGVDFKLIDTGGIEMGD 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLY 332
           DD  +     +       AD+IL L +    +N+  E    I    +     +  K D  
Sbjct: 66  DDAFQGSIRNQALAGANEADVILFLVDGKTGVNADDEAVARILRKTSKPVFLVVNKLDTP 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
           +   E ++            S+  G G  +L++++ + L
Sbjct: 126 NRMDEVWEFYQLGLGDPWPVSAMHGHGTGDLLDEVVNEL 164


>gi|156603663|ref|XP_001618879.1| hypothetical protein NEMVEDRAFT_v1g153067 [Nematostella vectensis]
 gi|156200746|gb|EDO26779.1| predicted protein [Nematostella vectensis]
          Length = 304

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + ++  + + +  ++ +    +  ++G  NAGKSS  NAL  +D  IVT+I GTTRD
Sbjct: 22  ELLDALTEKMPKPEEIDLEQEALPRFAVVGRPNAGKSSFINALIGEDRNIVTNIAGTTRD 81

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
            +    +  G+   + DTAGIR+   +    E   + R    +E +D+I+L+ +     E
Sbjct: 82  SIDTKYNRFGFDFNLVDTAGIRKKSKVKEDLEFYSVMRAVRTIEYSDVIILMVDATRGFE 141

Query: 314 --------ISFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFT 347
                   ++       + +  K DL                     +T+     +S  T
Sbjct: 142 GQDQNIFWLAEKNKKGVVILINKWDLVEKETNTMRDYEAAVRKQIAPFTDVPVIFVSVLT 201

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + + I     + +N+  ++P S
Sbjct: 202 KQRIFKAIETAVEVFNNRKNRIPTS 226


>gi|144227450|gb|AAZ44160.2| GTP-binding protein EngA [Mycoplasma hyopneumoniae J]
          Length = 433

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 29/186 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ ++G  NAGKSSL N L  ++ +I+++IPGTTRD ++    + G  ++I DTAGIR+
Sbjct: 171 FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRK 230

Query: 280 TDDIVE---KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              + E        R F  ++ ADL L+L +               +F +N   I +  K
Sbjct: 231 KSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFDLRIAGYAFERNKPIILVINK 290

Query: 329 SDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL    T                        IS+ TGE + +LI+ I  + +N  KK+ 
Sbjct: 291 WDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQVKNNLEKKIS 350

Query: 371 FSIPSH 376
            ++ + 
Sbjct: 351 TNLLNQ 356



 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 73/167 (43%), Gaps = 15/167 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G SN GKS+LFN +A K ++I   +PG TRD +  ++    +   + DT GI+  +
Sbjct: 5   VALVGKSNVGKSTLFNRIAGKKISITNPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIEN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
           +  +     +  + +E AD+++ + +   + +        +        I +  K +   
Sbjct: 65  ENFQDLVRIQVQIALEEADILVWVLDGTKEIDSEDHFVLSLLRKSKKKIILVANKLENNK 124

Query: 334 TYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           ++         E    IS+  G G+ + ++++    + K  K     
Sbjct: 125 SFDISLFELGFEKVFPISALHGHGVGDFLDELVGNFNKKNFKNEIFF 171


>gi|86145598|ref|ZP_01063928.1| GTP-binding protein EngA [Vibrio sp. MED222]
 gi|85836569|gb|EAQ54695.1| GTP-binding protein EngA [Vibrio sp. MED222]
          Length = 493

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 100/239 (41%), Gaps = 30/239 (12%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L  +     A+   +E  +V + +  E   +      D +   ++ +   +     K+ I
Sbjct: 154 LIDLALNPFAEALKAENGEVSDLTEFEDEEEEQV---DFTEEEAEEEFKRLQDQPIKLAI 210

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R   +I 
Sbjct: 211 IGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRRRKNIN 270

Query: 285 ---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKS---- 329
              EK  + +T   +E+A+++LLL +     S +++S            +    K     
Sbjct: 271 ETVEKFSVVKTLKAIEDANVVLLLIDARENISDQDLSLLGFALNAGRSIVIAVNKWDGLD 330

Query: 330 -DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            D+     +E D           H IS+  G G+  L   ++    +   ++  S+ + 
Sbjct: 331 NDVKDRVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYKSATTRVGTSVLTR 389



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 17/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD          +   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHFSEHDFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +     +++  K+        + +  K D   
Sbjct: 65  EGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDVAIAKHLRQLEKPSMLVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                 D            ++  G G+  LI+   +  +   K     +
Sbjct: 125 PDAASADFWQLGVEDMYQIAAAHGRGVTALIDLALNPFAEALKAENGEV 173


>gi|295106000|emb|CBL03543.1| ribosome-associated GTPase EngA [Gordonibacter pamelaeae 7-10-1-b]
          Length = 438

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 34/210 (16%)

Query: 198 FLKNDISSHISQGK--LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L + +   + + +    E       + I+G  NAGKSSL N + K D +IV+D+ GTTR
Sbjct: 155 DLLDAVVEELRRAEVPADEEEEPSINVAIIGRPNAGKSSLTNKMTKGDRSIVSDVAGTTR 214

Query: 256 DVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI---- 308
           D +   ++ +G L  I DTAG+R     D  VE  G  R    ++ AD+ LL+ +     
Sbjct: 215 DAIDTAVEHDGTLYTIVDTAGLRRKSQIDQDVEYYGFVRAMRAIDRADVALLVIDSTLGL 274

Query: 309 -NSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHL-----------------ISSFT 347
            +  + +   +  +    + +  K DL      + D                   IS+ T
Sbjct: 275 TDQDQRVAGYAAERGCAMVIVLNKWDLVEGPEAKADIRERIADRMTFVGYAPVVAISALT 334

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           G+     +++I   +   ++    +IP++K
Sbjct: 335 GKK----VDRIWEAIDEAYENFSQTIPTNK 360



 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+  N +A+ D AIV ++ G TRD    + D  G   K+ DT GI    
Sbjct: 6   VAVVGRPNVGKSTFVNRIAQADEAIVHEMRGVTRDRSYHEADWNGVEFKLVDTGGIEMGD 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLY 332
           DD  +     +       AD+++ + +    IN+  E    I          +  K D  
Sbjct: 66  DDAFQGSIRAQAIAGANEADVVIFIVDGKTGINADDEAVARILRKAGKPVFLVVNKMDTP 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
           +   E ++            SS  G G  +L++ +   L
Sbjct: 126 NRTDELWEFYQLGVGDPWPVSSTHGHGTGDLLDAVVEEL 164


>gi|325919426|ref|ZP_08181452.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Xanthomonas gardneri ATCC 19865]
 gi|325550092|gb|EGD20920.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Xanthomonas gardneri ATCC 19865]
          Length = 465

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 99/261 (37%), Gaps = 41/261 (15%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE-----------VLNDILFLKN 201
            L      W+ KL      +   +D ++EE V++  ++                I  L  
Sbjct: 98  SLDDEILAWLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLE 157

Query: 202 DISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ + +     GE++       +I  +G  N GKS+L N L  ++  I +++PGTTRD +
Sbjct: 158 EVGARLPAEGAGELLDTDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSI 217

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            +D+D +G   ++ DTAG+R   + ++ VEK    +T   +E   + +L+ +        
Sbjct: 218 AVDMDRDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDAGEGVTDQ 277

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEGL 351
                          +    K D  S Y                       IS+  G G+
Sbjct: 278 DATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVSWAEAVRISALHGSGM 337

Query: 352 EELINKIKSILSNKFKKLPFS 372
            EL   I    ++   +   S
Sbjct: 338 RELFQAIHRAHASATHEFSTS 358



 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G  N GKS++FNAL +   A+V D PG TRD       L+      + DT GI   
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEERPFIVVDTGGIAGD 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDLY 332
           ++ +     ++       ADL+L + +          + +++ +      + +  K D  
Sbjct: 65  EEGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARPTVLVINKIDGT 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNK 365
              T   +            S+   +G++EL+ ++ + L  +
Sbjct: 125 DEETVRSEFARYGFSDVVALSAAHRQGIDELLEEVGARLPAE 166


>gi|302874737|ref|YP_003843370.1| ribosome-associated GTPase EngA [Clostridium cellulovorans 743B]
 gi|307690648|ref|ZP_07633094.1| GTP-binding protein EngA [Clostridium cellulovorans 743B]
 gi|302577594|gb|ADL51606.1| ribosome-associated GTPase EngA [Clostridium cellulovorans 743B]
          Length = 438

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 15/163 (9%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +  +       E      KI ++G  N GKSSL N L  ++  IV++IPGTTRD 
Sbjct: 155 DMLDMVVDNFKDISNDEASEEYIKIAMIGKPNVGKSSLINKLLGEERNIVSNIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +   L+ E     + DTAG+R      + +E+  + RT   +E AD+ +L+ +   +   
Sbjct: 215 IDSPLETEIGKFMLIDTAGLRRKSKVKEEIERYSVIRTLTAIERADVCILMLDATEELSE 274

Query: 315 SFPK--------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
              K        N   + I  K DL     E+ D  +  FT +
Sbjct: 275 QDEKIIGYAHELNKAIMVIVNKWDLI----EKDDKTMKKFTDD 313



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 15/189 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D PG TRD +    +  G    I DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVEDKPGVTRDRIYASSEWVGQEFTIIDTGGIEPKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI+  +  ++  + +E A++I+ + +  S          ++        +    K D  
Sbjct: 66  DDIILAQMRRQALIAIETANVIIFIVDGKSGLTDTDREVAQMLRKSKKSIVLAVNKVDSI 125

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
                +++     F   GL + +  I +        +   +  + + + +   +  Y+++
Sbjct: 126 KEEENKFE-----FYNLGLGDPV-AISASQGLGLGDMLDMVVDNFKDISNDEASEEYIKI 179

Query: 393 ASLNEKDCG 401
           A + + + G
Sbjct: 180 AMIGKPNVG 188


>gi|325299810|ref|YP_004259727.1| GTP-binding protein engA [Bacteroides salanitronis DSM 18170]
 gi|324319363|gb|ADY37254.1| GTP-binding protein engA [Bacteroides salanitronis DSM 18170]
          Length = 437

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I S   +    E+     +  ++G  NAGKSSL NA   ++  IVT+I GTTRD 
Sbjct: 154 DLLDLILSKFRKEADEELDEEIPRFAVVGRPNAGKSSLINAFVGEERNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    D  G+   + DTAGIR+ + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYDKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRAIENSDVCILMLDATRGIEG 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYST-------------------YTEEYDHLISSFT 347
                  +        + +  K DL                      +T+      S+ T
Sbjct: 274 QDLNIFSLIQRNQKGLVVVVNKWDLVEEKSAKVMKTYETAIRNRLAPFTDFPIIFASALT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + +++   K +   +  ++  +
Sbjct: 334 KQRIFKVLETAKEVYQARTTRISTA 358



 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      + +G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWQGKEFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKS 329
             +DDI E+E  K+  L ++ AD+IL L ++             I        I +  K+
Sbjct: 62  VNSDDIFEEEIRKQVILAMDEADVILFLVDVKNGVTDLDMDVAAILRRSKKPVIVVANKT 121

Query: 330 ---DLYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
              DL     E Y       + IS+ +G G  +L++ I S    +  + 
Sbjct: 122 DNNDLQYNAAEFYSLGLGEPYCISALSGSGTGDLLDLILSKFRKEADEE 170


>gi|262371080|ref|ZP_06064402.1| GTPase [Acinetobacter johnsonii SH046]
 gi|262313966|gb|EEY95011.1| GTPase [Acinetobacter johnsonii SH046]
          Length = 469

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 112/284 (39%), Gaps = 22/284 (7%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 73  EQSKTAINEADIIVFVVDARAGLLASDEQIARELRTL-GKKVYLVANKVDGVHAEAALVE 131

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAG 231
              L   E   V   ++         L++ +SS        E  +N G ++ I+G  N G
Sbjct: 132 FYKLGMGEPMQV---AASHGRGVQQMLEDVLSSVPEDEDADEHDKNTGLRLAIIGRPNVG 188

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KS+L N L  ++  +  D PGTTRD + I  + +G    + DTAG+R     D+++EK  
Sbjct: 189 KSTLVNRLLGEERVVAFDQPGTTRDSIYIPYERDGRQYTLIDTAGVRRKGKVDEMIEKFS 248

Query: 289 IKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEEYD 340
           I +T   +++A +I+++ +      ++++     +       +    K D  S Y  +  
Sbjct: 249 IVKTLQAIKDAHVIVVVLDAREGVVEQDLHLIGYALEAGRAMVIAINKWDNMSEYDRKQC 308

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
            L      + +      + S L        +          HL 
Sbjct: 309 KLDVDRRFDFIPWAKVHLISALHGTGVGDLYPSIHRAYDSSHLK 352



 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E +
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVFQNKSFIVVDTGGIGENE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD--- 330
             ++    +++   +  AD+I+ + +  +    S  +              +  K D   
Sbjct: 65  GGIDSYMAEQSKTAINEADIIVFVVDARAGLLASDEQIARELRTLGKKVYLVANKVDGVH 124

Query: 331 ----LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLP 370
               L   Y       +  ++  G G+++++  + S +        
Sbjct: 125 AEAALVEFYKLGMGEPMQVAASHGRGVQQMLEDVLSSVPEDEDADE 170


>gi|325280073|ref|YP_004252615.1| GTP-binding protein engA [Odoribacter splanchnicus DSM 20712]
 gi|324311882|gb|ADY32435.1| GTP-binding protein engA [Odoribacter splanchnicus DSM 20712]
          Length = 435

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 12/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + SH  +    E   +  +I I+G  N GKSS  NAL  ++  IVTDI GTTRD 
Sbjct: 155 DLLDQVVSHFQE-NTIEDTDHLPRITIVGRPNVGKSSTINALIGEERNIVTDIAGTTRDT 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           L    +  GY   + DTAG+R+   +   VE   + R+   +E +D+ +LL +     E 
Sbjct: 214 LNTRYNRFGYDFLLVDTAGLRKKAKVSEDVEFYSVMRSIRAIEESDVCILLIDATRGMEA 273

Query: 315 SFPKNIDFI--------FIGTKSDLYST 334
                   I         +  K DL   
Sbjct: 274 QDLNIFHLIERNRKGVVIVVNKWDLVEK 301



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L     AIV +  G TRD         G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGTRKAIVNEESGVTRDRNYGKSSWNGKDFSVIDTGGYVSNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
           DDI E+E  K+  L ++ AD+IL + +     +  + +F +     +     +  K D +
Sbjct: 65  DDIFEEEINKQVILALDEADVILFMVDAEIGVTDLDQNFARLLRNIDKPVYLVANKVDNH 124

Query: 333 STYTEEYD----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               E  D            ISS +G G  +L++++ S       +    +P
Sbjct: 125 ERLYEAQDFYRLGIKGDLFCISSVSGSGTGDLLDQVVSHFQENTIEDTDHLP 176


>gi|237712743|ref|ZP_04543224.1| GTP-binding protein EngA [Bacteroides sp. D1]
 gi|262408120|ref|ZP_06084667.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_22]
 gi|293369492|ref|ZP_06616071.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CMC 3f]
 gi|294644223|ref|ZP_06721993.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CC 2a]
 gi|294808599|ref|ZP_06767339.1| ribosome-associated GTPase EngA [Bacteroides xylanisolvens SD CC
           1b]
 gi|298480163|ref|ZP_06998361.1| ribosome-associated GTPase EngA [Bacteroides sp. D22]
 gi|229447220|gb|EEO53011.1| GTP-binding protein EngA [Bacteroides sp. D1]
 gi|262353672|gb|EEZ02765.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_22]
 gi|292635377|gb|EFF53890.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CMC 3f]
 gi|292640433|gb|EFF58681.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CC 2a]
 gi|294444198|gb|EFG12925.1| ribosome-associated GTPase EngA [Bacteroides xylanisolvens SD CC
           1b]
 gi|295088054|emb|CBK69577.1| ribosome-associated GTPase EngA [Bacteroides xylanisolvens XB1A]
 gi|298273444|gb|EFI15007.1| ribosome-associated GTPase EngA [Bacteroides sp. D22]
          Length = 437

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +DD+ E+E  K+  L V+ AD+IL + ++ +           I    N   I +  K+
Sbjct: 62  VNSDDVFEEEIRKQVLLAVDEADVILFVVDVMNGVTDLDMQVAAILRRANSPVIMVANKT 121

Query: 330 DLYS---------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D +                 + +S+ TG G  +L++ I S    +  ++
Sbjct: 122 DNHDLQYNAPEFYKLGLGDPYCVSAMTGSGTGDLMDLIVSNFKKESSEI 170



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 89/205 (43%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I S+  +     +  +  +  ++G  NAGKSS+ NA   ++  IVT+I GTTRD 
Sbjct: 154 DLMDLIVSNFKKESSEILDDDIPRFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR+ + +    E   + R+   +E +D+ +L+ +     E 
Sbjct: 214 IYTRYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRAIEGSDVCILMLDATRGVES 273

Query: 314 -------ISFPKNIDFIFIGTKSDL-------------------YSTYTEEYDHLISSFT 347
                  +        + +  K DL                   ++ + +      S+ T
Sbjct: 274 QDLNIFSLIQKNQKGLVVVINKWDLVEDKSVKVQKTFEEAVRSRFAPFVDFPIIFASALT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + +++ + +++  N+  K+P +
Sbjct: 334 KQRILKVLEEARNVYENRTTKIPTA 358


>gi|148241565|ref|YP_001226722.1| GTP-binding protein EngA [Synechococcus sp. RCC307]
 gi|166225929|sp|A5GR60|DER_SYNR3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|147849875|emb|CAK27369.1| GTP-binding protein engA [Synechococcus sp. RCC307]
          Length = 452

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 12/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   +      E      ++ I+G  N GKSSL N +  ++ AIV+ I GTTRD 
Sbjct: 156 DLLDQVLDFLPPQDEEEAP-EPIQMAIVGRPNVGKSSLLNTVCGENRAIVSPIRGTTRDT 214

Query: 258 LTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEIN---SK 311
           +   ++ EG   K+ DTAGI   R  +   E  GI R+F  +E +D+ +L+ +     ++
Sbjct: 215 IDTSIEREGQSWKLLDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDAEEGVTE 274

Query: 312 KEISFP-----KNIDFIFIGTKSDLYST 334
           ++         +    + +  K DL   
Sbjct: 275 QDQRLAGRIEEEGRACLVVVNKWDLVEK 302



 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 19/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    +    G   ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSRDAIVHDEPGVTRDRTYQEGFWGGRTFRVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLY 332
           D     E  ++  L +  A + L++ +       + + I+     +    +    K +  
Sbjct: 66  DSEFLPEIREQASLAMAEACVALVIVDGQQGLTAADEAIAAWLRQQKCPVLLGVNKCESP 125

Query: 333 S----------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                               IS+  G G  +L++++   L  + ++ 
Sbjct: 126 EQGLAMAAEFWALGLGEPKPISAIHGAGTGDLLDQVLDFLPPQDEEE 172


>gi|239831251|ref|ZP_04679580.1| small GTP-binding protein [Ochrobactrum intermedium LMG 3301]
 gi|239823518|gb|EEQ95086.1| small GTP-binding protein [Ochrobactrum intermedium LMG 3301]
          Length = 489

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 18/165 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 8   GFTVAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 67

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           E  +D +E     +T   ++ AD+IL + +  +          E+        + +  K+
Sbjct: 68  EAANDSLEARMRAQTEAAIQEADVILFVVDAKNGLTPTDSTFAEVVRRSGKPVVLVANKA 127

Query: 330 DLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNK 365
           +     +  YD           IS+  G+G+ +L + I  +L  +
Sbjct: 128 EARGAQSGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELLGEE 172



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 11/125 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I I+G  NAGKS+L N +  +D  +     G TRD +++D +     +K+ DTAG+R 
Sbjct: 218 MRIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISVDWEWRDRKIKLFDTAGLRR 277

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      +  A++++++ +     E        +   +    I    K
Sbjct: 278 KSRVQEKLEKLSVADGLRAIRFAEVVIIVLDATIPFEKQDLQIADLIIREGRAPIIAFNK 337

Query: 329 SDLYS 333
            DL  
Sbjct: 338 WDLIE 342


>gi|302333085|gb|ADL23278.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 436

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + SH  + +      +  ++ I+G  N GKSSL NA+  +D  IV+++ GTTRD 
Sbjct: 154 DLLDAVVSHFGEEEEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   +G    + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 IDTEYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEQGKAVVTVVNKWDTVEK 301



 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + ++ AD+I+ +  +            +I +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNME 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             T+ YD           IS   G GL +L++ + S  
Sbjct: 126 MRTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVSHF 163


>gi|309809326|ref|ZP_07703195.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 2503V10-D]
 gi|308170439|gb|EFO72463.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 2503V10-D]
          Length = 435

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D PG TRD +  +    G    + DT GI   D
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
           +++E++   +  + +  AD+I++L ++         +  +I +      I    K+D   
Sbjct: 66  NVIEEQIKTQAEIAINEADVIVMLSDVTGHVTNLDETIAKILYKAKKPIILAINKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +S   G GL +L++ I S           +  
Sbjct: 126 QRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKFDGNNTTDDDNNI 175



 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 87/187 (46%), Gaps = 29/187 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +  I+G  N GKSS+ N++  ++  IV D+ GTTRD +    + +G    I DTAGI
Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326
           R    +    EK  + R+   +E +D+ +++ +     I   K I   +       I   
Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292

Query: 327 TKSDL-----------YSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKK 368
            K D+                +E+ +        +S+ TG+ +E++++ +K++  N+ ++
Sbjct: 293 NKWDVPYKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352

Query: 369 LPFSIPS 375
           +  S+ +
Sbjct: 353 IQSSVLN 359


>gi|291087651|ref|ZP_06347028.2| ribosome-associated GTPase EngA [Clostridium sp. M62/1]
 gi|291074566|gb|EFE11930.1| ribosome-associated GTPase EngA [Clostridium sp. M62/1]
          Length = 446

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 23/176 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +H  +    E   +  +I I+G  N GKSS+ N L  ++  IV++I GTTRD 
Sbjct: 160 ELLDAVVAHFPEDTGEEEDDDRPRIAIVGKPNVGKSSIVNKLLGENRVIVSNIAGTTRDA 219

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++   G      DTAG+R  + I    E+  I RT   VE AD++L++ +       
Sbjct: 220 VDTEIVHNGTEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLVVIDATEGVTE 279

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  I+  +    I +  K D                  + + E  NKIK+IL
Sbjct: 280 QDAKIAGIAHDRGKGIIIVVNKWDAIEK------------NDKTIYEYTNKIKTIL 323



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 19/166 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G  N GKS+LFN LA + ++IV D PG TRD +  D         + DT G
Sbjct: 5   RKKPVVAVVGCPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADCTWLDKAFTLIDTGG 64

Query: 277 IR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           I  ++ DI+  +  ++  + +  AD+I+ + ++            ++        I    
Sbjct: 65  IEPDSRDIILAQMREQAEIAIATADVIIFIVDVRQGLTDSDSKVADMLRKSRKPVILAVN 124

Query: 328 KSDLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILS 363
           K D ++ +  +              IS+ +  GL EL++ + +   
Sbjct: 125 KVDSFAKFGNDVYEFYNLGIGDPIPISAASRLGLGELLDAVVAHFP 170


>gi|303239305|ref|ZP_07325833.1| ribosome-associated GTPase EngA [Acetivibrio cellulolyticus CD2]
 gi|302593091|gb|EFL62811.1| ribosome-associated GTPase EngA [Acetivibrio cellulolyticus CD2]
          Length = 440

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 11/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++I  +       E      K+ ++G  NAGKSSL N +  +D  IV+DIPGTTRD 
Sbjct: 156 DLLDEIYKYFPDETEEEYDEEVIKVAVIGKPNAGKSSLINKVLGEDRVIVSDIPGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++ E       DTAGIR    I    E+    R++  +E AD+ L++ +       
Sbjct: 216 IDTYVENEEGKFVFIDTAGIRRQSKINENIERYSTIRSWTAIERADVCLIMIDAEEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE 337
                   +  +    I +  K DL    T 
Sbjct: 276 QDTKIAGYAHEQGKASIVVVNKWDLVEKNTG 306



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+ FN LA + ++IV D PG TRD +  +++       + DT GI   +
Sbjct: 6   VAIVGRPNVGKSTFFNYLAGRRISIVEDTPGVTRDRIYTEVEWRNRKFTLIDTGGIEPYS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE--------INSKKEISFPKNIDFIFIGTKSDLY 332
           +D + ++   +  + +E A++I+ + +         N    +        I +  K D  
Sbjct: 66  EDKIMQQMKSQAEIAIETANVIVFMVDRKDGLTASDNEVATLLRKSKKPVILVVNKVDRV 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILS 363
                E               SS  G G+ +L+++I     
Sbjct: 126 GELPAEVYEFYNLGIGDLMTVSSIHGLGMGDLLDEIYKYFP 166


>gi|294140150|ref|YP_003556128.1| GTP-binding protein EngA [Shewanella violacea DSS12]
 gi|293326619|dbj|BAJ01350.1| GTP-binding protein EngA [Shewanella violacea DSS12]
          Length = 490

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ EG    + DTAG+R 
Sbjct: 200 IKLAIIGKPNVGKSTLINRILGEERVVVYDSPGTTRDSIYIPMEREGREYVLIDTAGVRR 259

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTK 328
             +  + VEK  + +T   +E+ +++LL+ +     +++++     +       +    K
Sbjct: 260 RSKVHETVEKFSVIKTLKAIEDCNVVLLIIDAREGIAEQDLGLLGFALNAGRALVIAVNK 319

Query: 329 SD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D     +      E D           H IS+  G G+  L   ++    +  +++  S
Sbjct: 320 WDGINQEIKDRVKSELDRRLGFIDFARIHFISALHGTGVGHLYESVEEAYDSATRRVSTS 379

Query: 373 IPSH 376
           + + 
Sbjct: 380 MLTR 383



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRASLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
           + +E    +++   +E AD++L L +  +          +    ++     +  K D
Sbjct: 65  EGIEVHMAEQSLAAIEEADVVLFLTDARAGLTAADHAIADHLRRRDKTTFVVANKVD 121


>gi|325285620|ref|YP_004261410.1| GTP-binding protein engA [Cellulophaga lytica DSM 7489]
 gi|324321074|gb|ADY28539.1| GTP-binding protein engA [Cellulophaga lytica DSM 7489]
          Length = 434

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 13/170 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   + + +      +  +  ++G  NAGKSS  NAL  ++  IVTD+ GTTRD 
Sbjct: 154 DLLDAVVKVLPEKETEN--DDLPRFAVVGRPNAGKSSFINALIGEERYIVTDVAGTTRDS 211

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR    +    E   + R+   +E+AD+ +L+ +     + 
Sbjct: 212 IDTKYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSVRAIEHADVCILMLDATRGFDG 271

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  ++   N   + +  K DL            ++   + +    +
Sbjct: 272 QVENIFWLAQRNNKGIVILVNKWDLVEDKETNTIKEYTTRIKQAIAPFTD 321



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGVEFSLIDTGGYVLGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +D+ E E  K+  L ++ AD I+ + ++ S          ++    +     +  K D  
Sbjct: 65  EDVFEAEIDKQVELAIDEADAIVFMVDVESGVTGMDEDVAKLLRRVDKPIFLVVNKVDNA 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
               +  +           I+S  G G  +L++ +  +L  K  +   
Sbjct: 125 KRAEDAVEFYSLGLGDYFTIASINGSGTGDLLDAVVKVLPEKETENDD 172


>gi|313893405|ref|ZP_07826977.1| ribosome biogenesis GTPase Der [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442046|gb|EFR60466.1| ribosome biogenesis GTPase Der [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 444

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 15/176 (8%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            + L ++  L +D   H           +   + I+G  N GKSSL NAL  +D  IV+D
Sbjct: 149 AKNLMNLGDLLDDTVKHFPPVGTNVDDEDTIHVAIIGRPNVGKSSLTNALLGQDRVIVSD 208

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLK 306
           + GTTRD +            + DTAG+R     D+ VE+  I R+   V+ +D+++L+ 
Sbjct: 209 VAGTTRDSIDTYWTHGDQKFVLIDTAGMRRKSKIDEAVERYSIVRSLRSVDRSDIVVLVL 268

Query: 307 EINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           +               ++      + +  K DL     E+ D     FT +  EEL
Sbjct: 269 DAQDGVTEQDKKIAGYAYEAGKGVVIVVNKWDLV----EKDDKTTLRFTEDIYEEL 320



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 20/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + ++G  N GKS+LFNA+  K ++IV DIPG TRD +  D +       + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKE---ISFPKNIDFIFIGTKSD 330
           E   ++ K    +  L +E AD+IL + +     + + +E   I        + +  K D
Sbjct: 66  ENSHVIPKMMRLQAELAIEEADVILFVVDGKQGIVPADEEVGNILRASGKPVVLVVNKID 125

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELIN 356
             +     Y+            S+     L +L++
Sbjct: 126 SVNQEPNIYEFYNLGLGDPIGISAKNLMNLGDLLD 160


>gi|213961763|ref|ZP_03390029.1| ribosome-associated GTPase EngA [Capnocytophaga sputigena Capno]
 gi|213955552|gb|EEB66868.1| ribosome-associated GTPase EngA [Capnocytophaga sputigena Capno]
          Length = 434

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 30/203 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +D+ + +   K  +      +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD 
Sbjct: 154 ELLDDLVALLP-VKEPQEENTLPRFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR    +    E   + R+   +E++D+ +L+ +     E 
Sbjct: 213 IDTKYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSIRAIEHSDVCILMLDATRGFES 272

Query: 314 -------ISFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                  ++       + +  K DL                     +T+     +S+   
Sbjct: 273 QDANIFWLAQRNRKGIVILVNKWDLVEKENNTAKEYEAVIRKEIEPFTDVPILFVSALNK 332

Query: 349 EGLEELINKIKSILSNKFKKLPF 371
           + + + I    ++ +N+ K++P 
Sbjct: 333 QRIYKAIETAVAVYNNRTKRIPT 355



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + ++G  N GKS+ FN L K+  AIV  + G TRD      D  G    + DT G +   
Sbjct: 5   VAVVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVSFSVIDTGGYLAGG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS--- 329
           DD  EKE  K+  L ++ AD I+ +  +         +  E+    +   +    K    
Sbjct: 65  DDSFEKEINKQVALAIDEADAIIFMVNVEEGLTGMDEAVSEMLRKCHKPILVAVNKVDSN 124

Query: 330 ----DLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               D++  Y   ++HL   SS  G G  EL++ + ++L  K  +   ++P
Sbjct: 125 NRRNDMHEFYALGFEHLYALSSVNGSGTGELLDDLVALLPVKEPQEENTLP 175


>gi|325915367|ref|ZP_08177684.1| small GTP-binding protein domain/GTP-binding hypothetical protein
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538414|gb|EGD10093.1| small GTP-binding protein domain/GTP-binding hypothetical protein
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 465

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 100/261 (38%), Gaps = 41/261 (15%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE-----------VLNDILFLKN 201
            L      W+ KL      +   +D ++EE V++  ++                I  L  
Sbjct: 98  SLDDEILAWLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLE 157

Query: 202 DISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++ + + +   GE++ N     +I  +G  N GKS+L N L  ++  I +++PGTTRD +
Sbjct: 158 EVGARLPEEGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSI 217

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            +DL+ +    ++ DTAG+R   + ++ VEK    +T   +E   + +L+ +        
Sbjct: 218 AVDLERDNRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGVTDQ 277

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEGL 351
                          +    K D  S Y                       IS+  G G+
Sbjct: 278 DATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVSWAEAVRISALHGSGM 337

Query: 352 EELINKIKSILSNKFKKLPFS 372
            EL   I    ++   +   S
Sbjct: 338 RELFQAIHRAHASATHEFSTS 358



 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + ++G  N GKS++FNAL +   A+V D PG TRD       L+      + DT GI   
Sbjct: 5   VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDLY 332
           ++ +     ++       ADL+L + +          + +++ +      + +  K D  
Sbjct: 65  EEGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARPTVLVINKIDGT 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKL 369
              T   +            S+   +G++EL+ ++ + L  +    
Sbjct: 125 DEETVRSEFARYGFSDVVALSAAHRQGIDELLEEVGARLPEEGSGE 170


>gi|312879956|ref|ZP_07739756.1| ribosome-associated GTPase EngA [Aminomonas paucivorans DSM 12260]
 gi|310783247|gb|EFQ23645.1| ribosome-associated GTPase EngA [Aminomonas paucivorans DSM 12260]
          Length = 447

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 12/162 (7%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEI-IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           E   ++  L ++IS+ + + +  E       ++ ++G  N GKSSLFN+L  ++  +V+D
Sbjct: 146 EHNRNMGDLLDEISALLPEAEPEERSPDEPVRVALVGRPNVGKSSLFNSLLGEERTLVSD 205

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLK 306
           IPGTTRD +   L  +G  ++I DTAG+R     D  +E     RTF  V+ +D+ ++L 
Sbjct: 206 IPGTTRDTVDSLLVWKGMNLRIMDTAGLRRKSRVDGALEYYSTVRTFQAVDRSDVTVVLL 265

Query: 307 EINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYD 340
           +                  +    +    K DL     +  D
Sbjct: 266 DAQELLAEQDKRLVGHVLDRGKGLVLGVNKWDLLPPTEDLGD 307



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKSSLFN L  K +AIV DIPG TRD L  + + +G    + DT GI   +
Sbjct: 4   IALVGRPNVGKSSLFNRLIGKRLAIVDDIPGVTRDRLYGEAEWDGKRFYLVDTGGIEASS 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD-- 330
               EK    +  + +E +D ++ + +          +  +         +    K D  
Sbjct: 64  PHPFEKAIEHQVRIALEESDGVVFILDGKDGVTPGDEAIADRLRRAGKPVVVAMNKLDND 123

Query: 331 -----LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKL 369
                L   Y   +  +  +S      + +L+++I ++L     + 
Sbjct: 124 KRDENLAEAYALGFPCVLGMSVEHNRNMGDLLDEISALLPEAEPEE 169


>gi|228473598|ref|ZP_04058350.1| ribosome-associated GTPase EngA [Capnocytophaga gingivalis ATCC
           33624]
 gi|228274970|gb|EEK13780.1| ribosome-associated GTPase EngA [Capnocytophaga gingivalis ATCC
           33624]
          Length = 434

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 29/184 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTRYNRFGFEFNLVDTAGIRRK 235

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
             +    E   + R+   +E++D+ LLL +     E        ++       + +  K 
Sbjct: 236 AKVKEDLEFYSVMRSVRAIEHSDVCLLLVDATRGFEGQDANIFWLAQRNKKGVVILVNKW 295

Query: 330 DLYST------------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           DL                     +T+     IS+ T + + + I K   + +N+ +++  
Sbjct: 296 DLVEKDTHTTKHFEEGIRKIIAPFTDVPIIFISALTKQRIYKAIEKAVEVYNNRSQRIKT 355

Query: 372 SIPS 375
           S+ +
Sbjct: 356 SVLN 359



 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 64/157 (40%), Gaps = 18/157 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  I G TRD      D  G    + DT G +   
Sbjct: 5   VAIVGRPNVGKSTFFNRLVQRREAIVDSISGVTRDRHYGKTDWNGRDFSVIDTGGYVAGG 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI +KE  K+  L +E AD I+ L ++ S          ++             K D  
Sbjct: 65  DDIFQKEIDKQVNLAIEEADAIIFLTDVESGIMGIDEEIAQLLRRSKKPTFLAVNKVDNT 124

Query: 333 STYTE---------EYDHLISSFTGEGLEELINKIKS 360
               +         E    ISS  G G  EL++ +  
Sbjct: 125 KRAIDANEFYALGFEEIFPISSVNGSGTGELLDAVVK 161


>gi|83647146|ref|YP_435581.1| GTP-binding protein EngA [Hahella chejuensis KCTC 2396]
 gi|123531965|sp|Q2SDW8|DER_HAHCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|83635189|gb|ABC31156.1| predicted GTPase [Hahella chejuensis KCTC 2396]
          Length = 472

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 31/210 (14%)

Query: 194 NDILFLKNDISSHISQGKLGEIIR----NGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
                +++ +   +      E +     +G +I I+G  N GKS+L N L  +D  +V D
Sbjct: 146 AHNRGVRSLLEKALEPFPEQEPLEGEDDSGIRIGIIGRPNVGKSTLVNRLLGEDRVVVFD 205

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLK 306
            PGTTRD + I  +  G    + DTAG+R   ++   VEK  I +T   +++A +++L+ 
Sbjct: 206 QPGTTRDSVYIPYERLGERYTLIDTAGVRRRKNVSEAVEKFSIVKTLQAIKDAHVVVLVL 265

Query: 307 EINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEE----------------YDHL 342
           +       +++     +       +    K D  S   ++                  H 
Sbjct: 266 DAREGIVDQDLHLLGFAIEAGRALVLAINKWDGMSQDDKDEVRREIDRRMGFVEYAQIHF 325

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           IS+  G G+  L   +     +   K   +
Sbjct: 326 ISALHGTGVGHLYESVHECFDSAMAKWSTN 355



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 19/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + +   AIV ++PG TRD    + +LEG    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRMTRSRDAIVANLPGLTRDRKYGEGELEGKHYIVVDTGGITGEE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---------KKEISFPKNIDFIFIGTKSDLY 332
             ++     ++F  +  AD++L + +  +          KE+   +    I +  K D  
Sbjct: 65  QGIDAAMAGQSFTAMNEADVVLFVVDAQAGVTPADEMIAKELRV-RGKPTILVVNKIDGM 123

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSILSNK 365
                  D            ++    G+  L+ K       +
Sbjct: 124 QPEVAAADFFAMGFQEYMYTAAAHNRGVRSLLEKALEPFPEQ 165


>gi|153816157|ref|ZP_01968825.1| hypothetical protein RUMTOR_02405 [Ruminococcus torques ATCC 27756]
 gi|317500477|ref|ZP_07958701.1| GTP-binding protein engA [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089422|ref|ZP_08338321.1| GTP-binding protein engA [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846492|gb|EDK23410.1| hypothetical protein RUMTOR_02405 [Ruminococcus torques ATCC 27756]
 gi|316898232|gb|EFV20279.1| GTP-binding protein engA [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404790|gb|EGG84328.1| GTP-binding protein engA [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 441

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 87/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + ++ +  +G       +  ++ I+G  N GKSS+ N L  ++  IV+DI GTTRD 
Sbjct: 156 DMLDIVAENFPEGSAQAEDDDRPRVAIVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++   G      DTAG+R  + I    E+  I RT   VE AD++L++ +       
Sbjct: 216 IDTEILHNGKEYIFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLMVIDATEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE-----EYDH-------------LISSFTG 348
                  I+  +    I +  K D            E D               +S+ TG
Sbjct: 276 QDAKIAGIAHERGKGVIIVVNKWDAIEKNDRTMREYESDIRQVLSYMPYAEIMYVSAATG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L  L + I  ++ N+  ++   + +
Sbjct: 336 QRLNRLYDMIDMVIENQTLRIATGVLN 362



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVTWLDKEFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + ++ AD+I+        L + +SK  ++        + +  K D +
Sbjct: 66  KDIILSQMREQAQIAIDTADVIIFITDVKQGLVDADSKVADMLRRSGKPVVLVVNKVDNF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             Y  +              IS+ +  GL ++++ +         +    
Sbjct: 126 DKYMADVYEFYNLGIGDPVPISAASRLGLGDMLDIVAENFPEGSAQAEDD 175


>gi|227537540|ref|ZP_03967589.1| GTP-binding protein EngA [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242677|gb|EEI92692.1| GTP-binding protein EngA [Sphingobacterium spiritivorum ATCC 33300]
          Length = 441

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 11/125 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  I+G  N GKSSL NAL  K+  IVT + GTTRD + I  +  G+   + DTAG+R  
Sbjct: 183 KYTIVGRPNVGKSSLTNALLGKERNIVTPVAGTTRDSIRIHYNQFGHEFLLIDTAGMRRK 242

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
             +    E   + RT   +E++D+++L+ +     E        ++       + +  K 
Sbjct: 243 SKVNEDIEFYSVMRTIKALEDSDVVILMLDAQDGIEAQDINIFHLAEKNKKGVMIVVNKW 302

Query: 330 DLYST 334
           DL   
Sbjct: 303 DLIEK 307



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV D  G TRD      +  G    + DT G +  +
Sbjct: 13  VAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYESAEWIGKKFTVIDTGGFVHGS 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           DD+ E+    + ++ +E A +I+ + ++        +   +I             K D  
Sbjct: 73  DDVFEEAIRDQVYIAIEEASVIIFMVDVTTGITDLDDEIADILRRSTKPVYVAANKVDHA 132

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             + +  +           ISS TG G  EL++ + S  
Sbjct: 133 KLHHDSAEFYAFGLGEIYNISSATGSGTGELLDAVVSTF 171


>gi|223557988|gb|ACM90994.1| GTPase [uncultured bacterium URE4]
          Length = 424

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 83/205 (40%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L ++I   + +    E   +    I I+G  N GKSSL NAL  ++  IVT + GTTRD
Sbjct: 142 DLLDEIVKVLPKDVPEEEDHSDIPHIAIVGRPNVGKSSLTNALLGEERNIVTPVAGTTRD 201

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
            ++   +  G+   + DTAG+R+   +    E   + R    +E++D+ +L+ +     E
Sbjct: 202 SISTYYNKFGHEFMLVDTAGMRKRAKVTEDLEFYSVLRAMRTIEHSDVCILMIDATLGME 261

Query: 314 --------ISFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFT 347
                   I        + +  K DL+                    + +      S   
Sbjct: 262 AQDMNIFNIIQKNRKGCVIVVNKWDLFEKESNTMRDYTEALKARLAPFNDIPIVFTSVIN 321

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + E++N    +  N  +++P S
Sbjct: 322 KQRILEVLNAAAHVAENMTRRIPTS 346



 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 18/159 (11%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGI 289
           GKS+LFN L     AIV +  G TRD      +  G    + DT G    +DD+ E    
Sbjct: 2   GKSTLFNRLVGMRQAIVDETAGVTRDRHYGKCEWCGTEFSVVDTGGYTSNSDDVFEDAIR 61

Query: 290 KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           ++  + VE AD++L + E  +          ++        +    K D      + YD 
Sbjct: 62  RQVVIAVEEADVVLFMCEAQTGITDYDAEIADLLRRSKKPVVLCVNKVDTGEKMYDAYDF 121

Query: 342 L---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                     IS+  G G  +L+++I  +L     +   
Sbjct: 122 YGLGLGEVWTISAANGSGTGDLLDEIVKVLPKDVPEEED 160


>gi|309805732|ref|ZP_07699772.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 09V1-c]
 gi|309807723|ref|ZP_07701658.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 01V1-a]
 gi|312875513|ref|ZP_07735516.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2053A-b]
 gi|315653509|ref|ZP_07906430.1| ribosome-associated GTPase EngA [Lactobacillus iners ATCC 55195]
 gi|308164985|gb|EFO67228.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 09V1-c]
 gi|308169034|gb|EFO71117.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 01V1-a]
 gi|311089024|gb|EFQ47465.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2053A-b]
 gi|315489200|gb|EFU78841.1| ribosome-associated GTPase EngA [Lactobacillus iners ATCC 55195]
          Length = 435

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D PG TRD +  +    G    + DT GI   D
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
           +++E++   +  + +  AD+I++L ++         +  +I +      I    K+D   
Sbjct: 66  NVIEEQIKTQAEIAINEADVIVMLSDVTGHVTNLDETIAKILYKAKKPIILAINKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +S   G GL +L++ I S           +  
Sbjct: 126 QRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKFDGNNTTDDDNNI 175



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 29/187 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +  I+G  N GKSS+ N++  ++  IV D+ GTTRD +    + +G    I DTAGI
Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326
           R    +    EK  + R+   +E +D+ +++ +     I   K I   +       I   
Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292

Query: 327 TKSDLYSTYT-----------EEYDH-------LISSFTGEGLEELINKIKSILSNKFKK 368
            K D+ S  T           +E+ +        +S+ TG+ +E++++ +K++  N+ ++
Sbjct: 293 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352

Query: 369 LPFSIPS 375
           +  S+ +
Sbjct: 353 IQSSVLN 359


>gi|282880854|ref|ZP_06289547.1| ribosome-associated GTPase EngA [Prevotella timonensis CRIS 5C-B1]
 gi|281305236|gb|EFA97303.1| ribosome-associated GTPase EngA [Prevotella timonensis CRIS 5C-B1]
          Length = 437

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 11/161 (6%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +   K  E+  +  +  ++G  N GKSS+ NA   +D  IVT+I GTTRD +    D  G
Sbjct: 163 LPSDKREELEEDIPRFAVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDKFG 222

Query: 267 YLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------IS 315
           +   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E        + 
Sbjct: 223 FDFYLVDTAGIRRKNKVTEDLEFYSVMRSIHSIENSDVCILMLDATRGIESQDMNIFQLI 282

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
              N   + +  K DL      +      +   E +   ++
Sbjct: 283 QRNNKSLVVVVNKWDLVEDKDHKVIKTFENAIRERMAPFVD 323



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 9/123 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSRKAIVSDTAGTTRDRQYGKCSWNGREFSVVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLY 332
           DDI E    K+  +  E ADL+L + ++            +I     +  I +  K D  
Sbjct: 65  DDIFEDAIRKQVVVATEEADLVLFVVDVKNGLTDWDADVAQILRQTKLPVILVANKVDNS 124

Query: 333 STY 335
           + Y
Sbjct: 125 AEY 127


>gi|260893088|ref|YP_003239185.1| ribosome-associated GTPase EngA [Ammonifex degensii KC4]
 gi|260865229|gb|ACX52335.1| ribosome-associated GTPase EngA [Ammonifex degensii KC4]
          Length = 447

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 12/179 (6%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAK 241
           +    S+ + LN    L   I     + +  E  +     + I+G  N GKSSL NAL  
Sbjct: 142 EPIPVSAAQGLNVGDLLDAVIDRLPPEDREEERPQAEAIAVAIVGRPNVGKSSLVNALLG 201

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVEN 298
           ++  IV+DIPGTTRD +      EG    + DTAG+R    I    E++   R    +  
Sbjct: 202 EERVIVSDIPGTTRDAVDTFFTWEGQPYILIDTAGLRRRSRIKEEAERQSCLRARQALRR 261

Query: 299 ADLILLLKE------INSKKEISFPKNIDFIFIG--TKSDLYSTYTEEYDHLISSFTGE 349
           A + +L+ +      +  K+     +      +    K DL  +  ++    + +   E
Sbjct: 262 AHVAVLVLDGAEGVTMQDKRIAGLIEEAGRAVVIAVNKWDLVPSSRKDAPRYLEALRRE 320



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 19/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +VI+G  N GKS+LFN L  K VAIV + PG TRD L  +++  G    + DT G+ E+ 
Sbjct: 6   VVIVGRPNVGKSTLFNRLVGKGVAIVEEEPGVTRDRLYREVEWCGREFVLVDTGGVVESP 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTK---- 328
           +  +E    ++    +E ADL+L + +    + ++ +    +        + +  K    
Sbjct: 66  ESPLEVAIRRQVEQALEEADLVLFVVDYKTGVTAEDQAIASMLRRTGKPTLLVVNKVDKF 125

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                 SD Y+         +S+  G  + +L++ +   L  + ++  
Sbjct: 126 DPPPVLSDFYALGLSTEPIPVSAAQGLNVGDLLDAVIDRLPPEDREEE 173


>gi|251778692|ref|ZP_04821612.1| ribosome-associated GTPase EngA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083007|gb|EES48897.1| ribosome-associated GTPase EngA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 438

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +  H  +           +I ++G  N GKSSL N L  ++  IV+D+ GTTRD 
Sbjct: 155 DMLDRVVEHFDRFDADAEDDEYIRIAMIGKPNVGKSSLINKLLGEERLIVSDVAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +   L+ E     + DTAG+R      + +E+  + RT+  +E AD+ +L+ +       
Sbjct: 215 IDSYLETEQGKFILIDTAGLRRKSKVKEEIERYSVIRTYASIEKADVCILMIDAQDGVTE 274

Query: 315 SFPK--------NIDFIFIGTKSDLYSTYTEEYDH------------------LISSFTG 348
              K        N   + +  K DL     +  +                    IS+ TG
Sbjct: 275 QDEKIIGYAHELNKAIMVLVNKWDLVEKDDKTMEKFKKDLQGSLKFMPYAEYLFISALTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           +   +++   K   +N  K++   I +
Sbjct: 335 QRTHKILELAKKCYNNYNKRVSTGILN 361



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + I+G  N GKS+LFN LA K ++IV D PG TRD +  + +   Y   + DT GI  T 
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTGGIEPTN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLY 332
           DDI+ K+  ++  + +E AD+I+ + +       + +E++          + +  K D  
Sbjct: 66  DDIIMKQMRRQANIAIETADVIVFIVDGKEGLTAADQEVANMLRKSKKPVVLVVNKIDSL 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 ++            S+    GL ++++++              
Sbjct: 126 KYEENSWEFYNLGIGDPITISASQALGLGDMLDRVVEHFDRFDADAEDD 174


>gi|295091914|emb|CBK78021.1| ribosome-associated GTPase EngA [Clostridium cf. saccharolyticum
           K10]
          Length = 444

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 23/176 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +H  +    E   +  +I I+G  N GKSS+ N L  ++  IV++I GTTRD 
Sbjct: 158 ELLDAVVAHFPEDTGEEEDDDRPRIAIVGKPNVGKSSIVNKLLGENRVIVSNIAGTTRDA 217

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++   G      DTAG+R  + I    E+  I RT   VE AD++L++ +       
Sbjct: 218 VDTEIVHNGTEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLVVIDATEGVTE 277

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  I+  +    I +  K D                  + + E  NKIK+IL
Sbjct: 278 QDAKIAGIAHDRGKGIIIVVNKWDAIEK------------NDKTIYEYTNKIKTIL 321



 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 19/166 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G  N GKS+LFN LA + ++IV D PG TRD +  D         + DT G
Sbjct: 3   RKKPVVAVVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADCTWLDKAFTLIDTGG 62

Query: 277 IR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           I  ++ DI+  +  ++  + +  AD+I+ + ++            ++        I    
Sbjct: 63  IEPDSRDIILAQMREQAEIAIATADVIIFIVDVRQGLTDSDSKVADMLRKSRKPVILAVN 122

Query: 328 KSDLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILS 363
           K D ++ +  +              IS+ +  GL EL++ + +   
Sbjct: 123 KVDSFAKFGNDVYEFYNLGIGDPIPISAASRLGLGELLDAVVAHFP 168


>gi|317490873|ref|ZP_07949309.1| ribosome-associated GTPase EngA [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920420|gb|EFV41743.1| ribosome-associated GTPase EngA [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 495

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 208 IKIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRK 267

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D VEK  + +T   +E++++ LL+ +     S +++S            + +  K
Sbjct: 268 RGKVTDTVEKFSVIKTLQAIEDSNVALLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 327

Query: 329 SDLYST----------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S                       H IS+  G G+  L   I+       +++  S
Sbjct: 328 WDGLSEDVKTQVKEMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCATRRVSTS 387

Query: 373 IPSH 376
           + + 
Sbjct: 388 LLTR 391



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD      ++ G+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVSGHEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + VE    +++ + +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  NGVETHMAEQSLMAIEEADIVLFMVDARAGLMPADEGIAQHLRSREKATFLVANKTDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINK 357
                 D           I++  G G+ +LI +
Sbjct: 125 PDVAIGDFYSLGFGEVYPIAASHGRGVAQLIEE 157


>gi|307718980|ref|YP_003874512.1| GTP-binding protein EngA [Spirochaeta thermophila DSM 6192]
 gi|306532705|gb|ADN02239.1| GTP-binding protein EngA [Spirochaeta thermophila DSM 6192]
          Length = 450

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 99/235 (42%), Gaps = 34/235 (14%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSL 235
           FS   D   F+S E    I  L+ +I   +   + G    +     + ILG  N GKS+L
Sbjct: 148 FSLGFDTVCFTSAEHGRGIDELEQEIERRLVLPEEGGDAPSAPEIDVAILGKPNTGKSTL 207

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRT 292
            N L  ++ A+V+D PGTTRD+L       G   +I DTAGIR     +D +E   ++R+
Sbjct: 208 LNTLLGEERALVSDAPGTTRDLLEGRFQYRGRWFRIVDTAGIRRRSRIEDDLEFYSVRRS 267

Query: 293 FLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----- 339
              +E A ++ LL +              ++  +    I +  K D  +    ++     
Sbjct: 268 LKVIEEAHVVFLLIDAQEGLTEQDKKIAAVAQRRGRGVILVLNKWDALTPVPNQFQAMKA 327

Query: 340 -------------DHLISSFTGEGLEELIN---KIKSILSNKFKKLPFSIPSHKR 378
                           IS+  GEG+++L++    ++  L  + +  P +   ++ 
Sbjct: 328 RIRFFFPHMDYAPIVKISARRGEGIDKLLDTALMLRDELGKRVETGPLNRALNRW 382



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 72/159 (45%), Gaps = 17/159 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           ++VI+G  N GKS+LFN L  +  AI    PG TRD +    +L G  V + DT GI  E
Sbjct: 19  RVVIVGRPNVGKSTLFNRLIGRRKAITHPRPGVTRDAVEETWELGGGRVLLVDTGGITSE 78

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN-------SKKEISFPKNIDFIFIGTKSDLY 332
              I E    +R   EV+ AD++LL+ ++           E+  P     I +  K D  
Sbjct: 79  RGGIFEPLVRERALREVDRADVLLLVLDVTELVPEDEELLELLRPYKERLILVVNKVDNE 138

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSIL 362
           +     ++            S+  G G++EL  +I+  L
Sbjct: 139 AREEMAWNFFSLGFDTVCFTSAEHGRGIDELEQEIERRL 177


>gi|300770935|ref|ZP_07080812.1| ribosome-associated GTPase EngA [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300762208|gb|EFK59027.1| ribosome-associated GTPase EngA [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 441

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 11/125 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  I+G  N GKSSL NAL  KD  IVT + GTTRD + I  +  G+   + DTAG+R  
Sbjct: 183 KYTIVGRPNVGKSSLTNALLGKDRNIVTPVAGTTRDSIRIHYNQFGHEFLLIDTAGMRRK 242

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
             +    E   + RT   +E++D+++L+ +     E        ++       + +  K 
Sbjct: 243 SKVNEDIEFYSVMRTIKALEDSDVVILMLDAQDGIEAQDINIFHLAEKNKKGVMIVVNKW 302

Query: 330 DLYST 334
           DL   
Sbjct: 303 DLIEK 307



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV D  G TRD      +  G    + DT G +  +
Sbjct: 13  VAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYESAEWIGKKFTVIDTGGFVHGS 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           DD+ E+    + ++ +E A +I+ + ++        +   +I             K D  
Sbjct: 73  DDVFEEAIRDQVYIAIEEASVIIFMVDVTTGITDLDDEIADILRRSTKPVYVAANKVDHA 132

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             + +  +           ISS TG G  EL++ + S  
Sbjct: 133 KLHHDSAEFYAFGLGEIYNISSATGSGTGELLDAVVSTF 171


>gi|315656788|ref|ZP_07909675.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492743|gb|EFU82347.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 523

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            L + I   + +    ++ R   +  ++ ++G  N GKSSL N+L+    A+V+++PGTT
Sbjct: 237 DLLDAILQVLPESGATQVTRAEDSTPRVALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTT 296

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK 311
           RD +   L+L+G      DTAG+R         +   + RT   +ENAD+ L+L +    
Sbjct: 297 RDPVDEVLELDGQQWVFVDTAGVRRRVKRSVGADYYSVLRTQAAIENADVALVLLDGGEP 356

Query: 312 KEIS--------FPKNIDFIFIGTKSDLYSTYTE----------------EYDHLISSFT 347
                              + +  K DL   Y +                     IS+ T
Sbjct: 357 LTEQDVRVVNQVIEAGRALVLVNNKWDLVDEYRQGELKYEQESDLAHVSWAPKINISAKT 416

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
           G     +   +++ L     ++P S
Sbjct: 417 GWHTNRITRALRAALEGWTIRIPTS 441



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD +T D    G    + DT G     
Sbjct: 89  LAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVTYDAHWNGRNFHLVDTGGWDVGV 148

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
             +++    +  + ++ AD  L + + N     +  +            + +  K D   
Sbjct: 149 SGLDRAVADQAEIAIDLADAALFVVDANVGATATDERLMKLLRRAGKPVLLVANKVDSER 208

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSN 364
              +            + IS+  G G  +L++ I  +L  
Sbjct: 209 QEADAAALWNLGMGQPYPISALHGRGTGDLLDAILQVLPE 248


>gi|317121946|ref|YP_004101949.1| ribosome-associated GTPase EngA [Thermaerobacter marianensis DSM
           12885]
 gi|315591926|gb|ADU51222.1| ribosome-associated GTPase EngA [Thermaerobacter marianensis DSM
           12885]
          Length = 455

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 30/197 (15%)

Query: 208 SQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +   G     G   + I+G  N GKSSL N L  ++  +V+DIPGTTRD + +      
Sbjct: 174 EEAGRGAWGEPGEIAVAIVGRPNVGKSSLVNRLLGEERVVVSDIPGTTRDAVDVLWRRGE 233

Query: 267 YLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEIS 315
            + +  DTAG+R      D VE     RT   +  AD+  L+ +              ++
Sbjct: 234 RVFRFIDTAGLRRKSRVKDDVEFYSTLRTQRALARADVACLVLDARDPATDQDKRIAGMA 293

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLI------------------SSFTGEGLEELINK 357
             +    +    K DL +   +  D                     S+ TG+ ++ L+  
Sbjct: 294 LEEGKACVLAVNKWDLVARGPDTADQYREALYREYDFLQFAPIVFLSALTGQRIDRLVEW 353

Query: 358 IKSILSNKFKKLPFSIP 374
           I  +  N  +++P  + 
Sbjct: 354 IGRVADNHRRQVPEPVL 370



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 59/121 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN + ++ +AI  D+PG TRD L  D D  G    + DT G+ E D
Sbjct: 5   VAIVGRPNVGKSTLFNRIIERRLAIEDDVPGVTRDRLYADTDWAGRAFTLVDTGGLAEGD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           D +  +  ++    V  AD+++++ +  +    +  +    +    K  + +    +  H
Sbjct: 65  DPLTVQVRRQVEAAVREADVLVMVVDGQAGVTPADEEVARLLRQAQKPTILAVNKVDDPH 124

Query: 342 L 342
            
Sbjct: 125 W 125


>gi|238926984|ref|ZP_04658744.1| GTP-binding protein EngA [Selenomonas flueggei ATCC 43531]
 gi|238885218|gb|EEQ48856.1| GTP-binding protein EngA [Selenomonas flueggei ATCC 43531]
          Length = 441

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 98/263 (37%), Gaps = 34/263 (12%)

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS------MEGMSG--ELSSLYG 159
           A          + G I+  E++ +   + S+ E+    +      ++G SG         
Sbjct: 46  AEWLTHEFTIIDTGGIEFDESDHILRSMRSQAELAMEEADVILFLVDGRSGLTTSDEEVA 105

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL-----------FLKNDISSHIS 208
           + + +           +D  E E +        L D +            L + + +   
Sbjct: 106 RLLRRTKKPVILAVNKIDSFEREALIYDFYSLGLGDPIPISASNAMNLGDLLDAVVAAFP 165

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
                    +   I ++G  N GKSSL N L  ++  IV+D+PGTTRD +      +G  
Sbjct: 166 TEPAEVQETDEIAIAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDTHFTKDGAK 225

Query: 269 VKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEIS---------- 315
             + DTAG+R    I    E+  + R+   ++ A ++L++  IN+ + I           
Sbjct: 226 YLLIDTAGMRRKGKITLPVERYSVMRSLRAIDRAGVVLMV--INAAEGILEQDTKIAGYV 283

Query: 316 FPKNIDFIFIGTKSDLYSTYTEE 338
                  I +  K D++    ++
Sbjct: 284 HESGKGVIIVVNKWDIFPEKNDK 306



 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN + KK V+IV D+PG TRD + +D +   +   I DT GI  + 
Sbjct: 6   VAVVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYLDAEWLTHEFTIIDTGGIEFDE 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D + +    +  L +E AD+IL L +  S           +        I    K D +
Sbjct: 66  SDHILRSMRSQAELAMEEADVILFLVDGRSGLTTSDEEVARLLRRTKKPVILAVNKIDSF 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 YD           IS+     L +L++ + +    +  ++  +
Sbjct: 126 EREALIYDFYSLGLGDPIPISASNAMNLGDLLDAVVAAFPTEPAEVQET 174


>gi|227112682|ref|ZP_03826338.1| GTP-binding protein EngA [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 495

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 208 IKLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMVRDEREYVLIDTAGVRK 267

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 268 RGKVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 327

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S    E                  H IS+  G G+  L   +    S   +++  +
Sbjct: 328 WDGLSQEVREQVKETLDLRLGFIDFARIHFISALHGSGVGNLFESVTEAYSCATRRVSTA 387

Query: 373 IPSH 376
           + + 
Sbjct: 388 MLTR 391



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSD 330
           D VE     ++ + +E AD++L + +       + + I+     +    + +  K+D
Sbjct: 65  DGVETRMAGQSLVAIEEADIVLFMVDARAGLMPADEGIAKHLRSREKTTVLVANKTD 121


>gi|260061763|ref|YP_003194843.1| GTP-binding protein EngA [Robiginitalea biformata HTCC2501]
 gi|88785895|gb|EAR17064.1| GTP-binding protein EngA [Robiginitalea biformata HTCC2501]
          Length = 412

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 92/234 (39%), Gaps = 16/234 (6%)

Query: 127 EAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           EA+++  ++ + T        +  M  ++       ++K+ +     +A   +S      
Sbjct: 61  EADAILFMVDAVTGVTGMDEEVARMLRKVDKPIFLVVNKVDNAARLEDAVEFYSLGLGEY 120

Query: 186 NFSSKEVLNDILFLKNDISSHISQ-GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              S    +    L + +   + +     E +    +  ++G  NAGKSS  NAL  ++ 
Sbjct: 121 YPVSSINGSGTGELLDALVPVLPERPPREEAL---PRFAVVGRPNAGKSSFINALIGEER 177

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADL 301
            IVTDI GTTRD +    +  G+   + DTAGIR    +    E   + R+   +E++D+
Sbjct: 178 YIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGIRRKSKVKEDLEFYSVMRSVRAIEHSDV 237

Query: 302 ILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
            L+L +     +        ++   +   + +  K DL    T           
Sbjct: 238 CLILVDATRGFDGQVQNIFWLAQRNHKGIVILVNKWDLVEKETGSVKEYTRMIK 291



 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 18/151 (11%)

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVE 297
           + ++  AIV  + G TRD      D  G    + DT G +  +DD+ EKE  K+  L V+
Sbjct: 1   MIQRREAIVDAVSGVTRDRHYGKSDWNGKEFSLIDTGGYVVGSDDVFEKEIDKQVLLAVD 60

Query: 298 NADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------- 342
            AD IL + +              +    +     +  K D  +   +  +         
Sbjct: 61  EADAILFMVDAVTGVTGMDEEVARMLRKVDKPIFLVVNKVDNAARLEDAVEFYSLGLGEY 120

Query: 343 --ISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +SS  G G  EL++ +  +L  +  +   
Sbjct: 121 YPVSSINGSGTGELLDALVPVLPERPPREEA 151


>gi|304311812|ref|YP_003811410.1| GTP-binding protein [gamma proteobacterium HdN1]
 gi|301797545|emb|CBL45765.1| GTP-binding protein [gamma proteobacterium HdN1]
          Length = 474

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 27/185 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +I ++G  N GKS+L N +  ++  +V D+PGTTRD + I  +  G    + DTAG+R
Sbjct: 177 GIRIAVVGRPNVGKSTLINRMLGEERVVVFDMPGTTRDSIYIPYERRGQKYTLIDTAGVR 236

Query: 279 ET---DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGT 327
           +    D+ VEK  + +T   +E+A +++L+ +       +++             +    
Sbjct: 237 KRGRVDEAVEKFSVIKTLQAIEDAHVVILVLDAREGIVDQDLHLLGFVLETGRSLLIALN 296

Query: 328 KSDLYSTYTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           K D    Y +                   H IS+  G G+ +L   ++    + F++L  
Sbjct: 297 KWDGMDDYQKSRVKVEIDRRMEFVSFAKIHFISALHGTGVGDLYGSVERAYQSAFRRLST 356

Query: 372 SIPSH 376
              + 
Sbjct: 357 PALTR 361



 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L K   AIV D+PG TRD    +  +  +   + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTKTRDAIVADMPGLTRDRKYGEARVGAHAFLVIDTGGITGEE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD--- 330
           + ++    +++ L +E ADL+  + +  +          +    +      +  K D   
Sbjct: 65  EGIDSLMAEQSMLAIEEADLVFFIVDAKAGLTAGDEVLAQRLRVREKPLYVVVNKIDGQD 124

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELIN 356
                  +S         IS+  G G+ ++I+
Sbjct: 125 SDEALAEFSRLGLGDPFFISASHGRGVTQMID 156


>gi|238797968|ref|ZP_04641458.1| GTP-binding protein engA [Yersinia mollaretii ATCC 43969]
 gi|238718173|gb|EEQ09999.1| GTP-binding protein engA [Yersinia mollaretii ATCC 43969]
          Length = 495

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 92/242 (38%), Gaps = 32/242 (13%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI--SSHISQGKLGEIIRNGYK 221
           +L         D +  E E     ++           ++I             +     K
Sbjct: 153 QLIEDVMAPYIDAEEPEVELTDEEANAAYWAAQEADGDEIPEDDVEDDFDPRSL---PIK 209

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+  
Sbjct: 210 LAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMTRDEREYVLIDTAGVRKRG 269

Query: 282 ---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD 330
              + VEK  + +T   +E+++++LL+ +     S +++S            +    K D
Sbjct: 270 KVTETVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWD 329

Query: 331 LYSTYTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +                       H IS+  G G+  L   I+       K++  S+ 
Sbjct: 330 GMTEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCSTKRVGTSLL 389

Query: 375 SH 376
           + 
Sbjct: 390 TR 391



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           D VE +   ++ L +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN 356
             T   D         H I++  G G+ +LI 
Sbjct: 125 PDTATADFYSLGLGEVHAIAASHGRGVTQLIE 156


>gi|168186800|ref|ZP_02621435.1| GTP-binding protein EngA [Clostridium botulinum C str. Eklund]
 gi|169295122|gb|EDS77255.1| GTP-binding protein EngA [Clostridium botulinum C str. Eklund]
          Length = 438

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 92/255 (36%), Gaps = 38/255 (14%)

Query: 118 FENGKIDLLEAESL----ADLISSETEMQRRLSM------------EGMSGELSSLYGQW 161
           + N    +++   +     D+I ++   Q +L++            +    +        
Sbjct: 48  WLNNNFTIIDTGGIEPENDDIIVAQMRRQAQLAIEMADVVLFIVDGKQGLTDADREVAHM 107

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL-----------FLKNDISSHISQG 210
           + K           +D  + +D         L + +            L +++       
Sbjct: 108 LRKANKSIVLAVNKIDRRQLDDNIYEFYNLGLGEPMPISASQGLGLGDLLDEVVGKFPDF 167

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E      +I ++G  N GKSSL N +  ++  IV++IPGTTRD +   ++ E     
Sbjct: 168 NGEEEEDEYIRIAMIGRPNVGKSSLINRILGEEKHIVSNIPGTTRDAVDSYIETEEGKFV 227

Query: 271 ISDTAGIRETDDIVEK---EGIKRTFLEVENADLILLLKEINSKKEISFPK--------N 319
           + DTAG+R    I E+       RT   +ENAD+ +L+ +          +        N
Sbjct: 228 LIDTAGLRRKSKIKEQVERYSAVRTLASIENADVCILMIDATEDIAEQDERIIGYAHEIN 287

Query: 320 IDFIFIGTKSDLYST 334
              + I  K DL   
Sbjct: 288 KAIVVIVNKWDLIEK 302



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D+PG TRD +  + +       I DT GI  E 
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAEAEWLNNNFTIIDTGGIEPEN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISF---PKNIDFIFIGTKSDLY 332
           DDI+  +  ++  L +E AD++L + +      ++ +E++      N   +    K D  
Sbjct: 66  DDIIVAQMRRQAQLAIEMADVVLFIVDGKQGLTDADREVAHMLRKANKSIVLAVNKIDRR 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 Y+            S+  G GL +L++++     +   +    
Sbjct: 126 QLDDNIYEFYNLGLGEPMPISASQGLGLGDLLDEVVGKFPDFNGEEEED 174


>gi|317968893|ref|ZP_07970283.1| GTP-binding protein Der [Synechococcus sp. CB0205]
          Length = 454

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 12/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  H+   +  E      ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD 
Sbjct: 156 DLLDRMVDHLPAAEELEG-EEPIQMAIVGRPNVGKSSLLNAVCGEKRAIVSPIRGTTRDT 214

Query: 258 LTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI---NSK 311
           +   ++ EG   K+ DTAGI   R  +   E  GI R+F  +E +D+ +L+ +     ++
Sbjct: 215 IDTSIEREGKPWKLLDTAGIRRRRSVNYGPEYFGINRSFKAIERSDVCVLVIDALDGVTE 274

Query: 312 KEISFP-----KNIDFIFIGTKSDLYST 334
           ++         +    + +  K D    
Sbjct: 275 QDQRLAGRIEEEGRACVVVVNKWDAIEK 302



 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 19/165 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD             K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQQGYWRDRHFKVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIG--TKSDLY 332
           D     E  ++  L +  A + +++ +         +    + +  +   +    K +  
Sbjct: 66  DSEFLPEIREQANLALSEASVAVVIADGQQGLTAADESIAEWLRGHNVPVLLAVNKCESP 125

Query: 333 ST----------YTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                               IS+  G G  +L++++   L    +
Sbjct: 126 EAGLAMAAEFWSLGLGEPFPISAIHGAGTGDLLDRMVDHLPAAEE 170


>gi|221194359|ref|ZP_03567416.1| ribosome-associated GTPase EngA [Atopobium rimae ATCC 49626]
 gi|221185263|gb|EEE17653.1| ribosome-associated GTPase EngA [Atopobium rimae ATCC 49626]
          Length = 440

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 11/173 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I + + + +   +  +  ++ I+G  N GKSSL N LA K  +IV+++ GTTRD 
Sbjct: 157 DLLDGIVAELPEEREEPVDDSIIRLAIIGRPNVGKSSLANRLAGKKRSIVSNVAGTTRDA 216

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN----- 309
           +   +  +   + + DTAG+R+   +    E   + R    ++ AD+ LL+ +       
Sbjct: 217 IDTMIMWKDQPICLVDTAGMRQKSKVHEDVEYYSLLRGLRAMDRADVCLLVIDATVGVTE 276

Query: 310 ---SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
                  ++  +    + +  K DL  T  ++ +   S          I  I+
Sbjct: 277 QDQKLANMAVERGCALVGLLNKWDLIDTEEKQAEVSASVDKRMSFSPWIPFIR 329



 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + ++G  N GKS+L N LA++  AIV +  G TRD    D D  G    + DT GI   +
Sbjct: 6   VAVVGRPNVGKSTLVNRLAQRREAIVHESRGVTRDRSYHDADWNGREFCLIDTGGIESVK 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDL 331
           + D       ++  L  E AD+I+ + +    I  + E    I    +     +  K D 
Sbjct: 66  SKDQFAPHIREQALLACEEADVIVFVVDGKTGITDEDEEVARIVRRSDKPVFLVVNKKDS 125

Query: 332 YSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             T  +               IS+  G G  +L++ I + L  + ++        
Sbjct: 126 PETEQDGLWDFYALGVGEPLPISASHGIGTGDLLDGIVAELPEEREEPVDDSIIR 180


>gi|78223517|ref|YP_385264.1| GTP-binding protein EngA [Geobacter metallireducens GS-15]
 gi|123571482|sp|Q39T85|DER_GEOMG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78194772|gb|ABB32539.1| GTP-binding protein Era, putative [Geobacter metallireducens GS-15]
          Length = 439

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 18/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  +  AIV D+PG TRD     +        + DT G    +
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGRRKAIVDDMPGVTRDRNYETVTRFEAPFILIDTGGFEPVS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY 332
           +D + ++  +++ L +E AD+I+ L +  +          E+         F+  K D  
Sbjct: 65  EDRLLQQMREQSQLAMEEADVIIFLMDGRAGLTPSDVEVVEMLRRVKKPVFFVVNKVDGE 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
               E  D         H IS+    G+ +L+ ++ + L     +L     + 
Sbjct: 125 KIENEAADFYTLGIGTLHTISAEHNRGVNDLMEEVVAALPKSSTRLDDEDITR 177



 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 84/216 (38%), Gaps = 29/216 (13%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            E    +  L  ++ + + +        +  +I ++G  N GKSSL N L   +  +   
Sbjct: 146 AEHNRGVNDLMEEVVAALPKSSTRLDDEDITRIAVVGRPNVGKSSLVNRLLGFERVVANP 205

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLK 306
            PGTTRD +            + DTAGIR   +T   +EK  +  +   +E AD++L++ 
Sbjct: 206 TPGTTRDSVDTLFACNKKRYLLIDTAGIRRKGKTTQKLEKYSVVDSLRSIERADVVLIII 265

Query: 307 EINSK--------KEISFPKNIDFIFIGTKSD-----------LYSTYTEEYDH------ 341
                           +F      IF+  K D                  E+ +      
Sbjct: 266 NAEEGVTEQDERIAGYAFEAGKACIFVVNKWDTLAKDNSTLGKFVDQIKTEFKYLSFAPI 325

Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             +S+ +G+ +  ++ +++ +++   K++  S  + 
Sbjct: 326 VFVSAKSGQRINRVMEEVERVMAQYSKRVSTSDLNR 361


>gi|225572013|ref|ZP_03780877.1| hypothetical protein RUMHYD_00307 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040546|gb|EEG50792.1| hypothetical protein RUMHYD_00307 [Blautia hydrogenotrophica DSM
           10507]
          Length = 441

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ++I  H  +    +      KI ++G  N GKSSL N L  ++  IV+DI GTTRD 
Sbjct: 156 DMLDEIVKHFPEHAGEDEEDEIPKIAVVGKPNVGKSSLINKLVGEERVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +   +  +G      DTAG+R      + +E+  + RT   VE A++++++ +       
Sbjct: 216 IDTKVKWQGREYVFIDTAGLRRKGKIKEEIERYSVIRTVTAVERANVVVIMIDGVEGVTE 275

Query: 309 -NSK-KEISFPKNIDFIFIGTKSDLYST-------YTEEYD-----------HLISSFTG 348
            ++K   I+  K    I    K D           YT++               IS+ TG
Sbjct: 276 QDAKIAGIAHEKGKGVIIAVNKWDAVEKNDKTIYRYTDKIRNTLAYMPYAELIFISAKTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
             L+ L   I  ++ N+  ++   + +
Sbjct: 336 LRLQRLFETIDMVVENQTLRIQTGVLN 362



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 76/170 (44%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA ++++IV D PG TRD +  ++        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGENISIVKDTPGVTRDRIYAEVTWLDKSFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +DI+  +  ++  + ++ AD+I+ L ++            ++        + +  K D +
Sbjct: 66  NDIILSQMREQAQIAIDTADVIVFLVDVRQGMVDADAKVADMLRRSTKPVVLVVNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +  +              +S+ +  GL +++++I         +    
Sbjct: 126 EKFMMDVYEFYNLGIGEPIPVSASSRLGLGDMLDEIVKHFPEHAGEDEED 175


>gi|58617258|ref|YP_196457.1| GTP-binding protein EngA [Ehrlichia ruminantium str. Gardel]
 gi|58416870|emb|CAI27983.1| Probable GTP-binding protein engA [Ehrlichia ruminantium str.
           Gardel]
          Length = 439

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 13/175 (7%)

Query: 173 EADLDFSEEEDV--QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            +++D+ E  +     + S E    ++ L + +   I +  +  +  +  KI I+G  NA
Sbjct: 125 CSEVDYLEYFNFIGPIYISAEHNLGMVDLYDALIPFIPESNVENLTSSYIKISIVGRPNA 184

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE--- 287
           GKS+  N L  +D  IV+  PGTTRD + I+ + +G    + DTAG+R+   I E     
Sbjct: 185 GKSTFVNRLVGEDRMIVSSEPGTTRDAVDIEYEYQGQKFILIDTAGMRKKAKITENIELT 244

Query: 288 GIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYST 334
            + ++   +  +D+++L+ +          S  E+   K    I    K D+ S 
Sbjct: 245 SVYKSIESINRSDIVILMIDSVYSIEQQDLSIAELIIQKGKAIIIALNKWDVISK 299



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 19/157 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS++FN L KK  AIV+++P  TRD      DL G   K+ DT G+  
Sbjct: 2   LKVAIVGLPNVGKSTIFNRLVKKRSAIVSNVPNLTRDRREGSADLCGLKFKVIDTGGVDY 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK---------NIDFIFIGTKS- 329
              +     + +  L +E  D+I  + +   +++I   +             I I  K  
Sbjct: 62  RIKLS-VLILDQVKLAIEACDVIFFVVDARVERDIKNIEFAKYLRKNTQKPIILIANKCE 120

Query: 330 --------DLYSTYTEEYDHLISSFTGEGLEELINKI 358
                   D    +       IS+    G+ +L + +
Sbjct: 121 SRKKCSEVDYLEYFNFIGPIYISAEHNLGMVDLYDAL 157


>gi|305666364|ref|YP_003862651.1| GTP-binding protein EngA [Maribacter sp. HTCC2170]
 gi|88708356|gb|EAR00593.1| GTP-binding protein EngA [Maribacter sp. HTCC2170]
          Length = 496

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 13/170 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   +      E   +  +  ++G  NAGKSS  NAL  ++  IVTDI GTTRD 
Sbjct: 216 ELLDALVEMLPD--NVEEESDLPRFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDS 273

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR    + E      + R+   +E++D+ LLL +     + 
Sbjct: 274 IDTKYNRFGFEFNLVDTAGIRRKSKVKEDLEFYSVMRSVRAIEHSDVCLLLLDATRGFDG 333

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  ++   N   + +  K DL            +    + +E   +
Sbjct: 334 QVSNIFWLAQRNNKGIVILVNKWDLVEDKETNTMKHFTEKIKKVIEPFTD 383



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      D  G    I DT G +  +
Sbjct: 67  VAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGKEFSIIDTGGYVVGS 126

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E+E  K+  L +E AD ++ + ++ +          +I    N        K D  
Sbjct: 127 DDIFEQEIDKQVELAIEEADALIFMVDVETGVTGMDEDVAKILHKVNKPVFLAVNKVDNA 186

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
               +  +            SS  G G  EL++ +  +L +  ++   
Sbjct: 187 KRAEDAVEFYSLGLGEYYNLSSINGSGTGELLDALVEMLPDNVEEESD 234


>gi|332140453|ref|YP_004426191.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype']
 gi|332141960|ref|YP_004427698.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype']
 gi|238693251|sp|B4RV85|DER_ALTMD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|327550475|gb|AEA97193.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551982|gb|AEA98700.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype']
          Length = 481

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 84/192 (43%), Gaps = 27/192 (14%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +   +     K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +    
Sbjct: 184 SQRQRLQELPIKLAIVGKPNVGKSTLTNRILGEERVVVYDMPGTTRDSVYIPMERDEREY 243

Query: 270 KISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----K 318
            + DTAG+R+     + VEK  I +T   +E A+++LL+ +     + +++S        
Sbjct: 244 ILIDTAGVRKRKKISEAVEKFSIVKTLQAIEEANVVLLVIDAREGITDQDLSLLGFVLNS 303

Query: 319 NIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSIL 362
               +    K      D+      E D           H IS+  G G+  L   ++   
Sbjct: 304 GRSLVVAVNKWDGLSTDIKDDIKREMDRRLGFIDFARIHFISALHGSGVGNLFESVQEAY 363

Query: 363 SNKFKKLPFSIP 374
            +  K++  ++ 
Sbjct: 364 MSATKRINTALL 375



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 17/188 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD        E     + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTNTRDALVADYPGLTRDRKYGQAKFEKRQFIVVDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + ++ E  +++ L +E AD++L L +       + + I+      N     +  K D   
Sbjct: 65  EGIDAEMAQQSLLAIEEADVVLFLVDARAGLLPADQGIADHLRRINKQIFVVANKVDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             +E  +           I++  G G+ +L+      L + F  +     + +      S
Sbjct: 125 GDSESAEFYSLGLGAIKQIAAAHGRGVSQLLQDALKPLESDFPDMEIIDEAPEEEEDAES 184

Query: 385 QTVRYLEM 392
           Q  R  E+
Sbjct: 185 QRQRLQEL 192


>gi|42523421|ref|NP_968801.1| GTP-binding protein [Bdellovibrio bacteriovorus HD100]
 gi|39575627|emb|CAE79794.1| probable GTP-binding protein [Bdellovibrio bacteriovorus HD100]
          Length = 449

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 88/229 (38%), Gaps = 32/229 (13%)

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A  DF E       +S E    +  +   +   I +      ++ G  I I+G  N GKS
Sbjct: 137 AKADFYEFGVDVVAASFEQRRGLAEILEWVVKQIPENPG--TVKEGMNIAIVGKPNVGKS 194

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIK 290
           S+ NA+   +  IV+DI GTT D +            + DTAG+R   + ++ +E     
Sbjct: 195 SICNAILGYNRMIVSDIAGTTIDSVDSPFVYNDKKYTLVDTAGLRRSAKREEDLEIISAF 254

Query: 291 RTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYSTYTEEY--- 339
           ++   +  AD++LL+ +             +     +   I +  KSDL      EY   
Sbjct: 255 KSQEAIRRADIVLLMVDGTVGPTDQDARIMQAILEDHKGVIVVANKSDLGGKEVPEYRKT 314

Query: 340 ----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                               S+ TG GLE+L   I+ +      ++P +
Sbjct: 315 FREQVERVFHFFTDVHIVFTSAKTGYGLEDLFEMIEKVAHQMTFRVPTA 363



 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 18/166 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+LFN + +   A+V +  G TRD++   +D+ G    + DT GI E 
Sbjct: 12  KVAIIGRPNVGKSTLFNIITETRKAVVKNQAGVTRDIMIEPVDIWGKQFDLIDTGGITEA 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLY 332
            DI  K   ++    + + DLI+ + +         +  I   K     F+ +  K D  
Sbjct: 72  GDIFSKLIKEQVTEFLHSVDLIVAVMDGRVGLVPEDRDIIRVAKQTGKPFLLVINKVD-- 129

Query: 333 STYTEEYDHLISSFTGEGLE------ELINKIKSILSNKFKKLPFS 372
               ++ D   + F   G++      E    +  IL    K++P +
Sbjct: 130 --SDQDQDMAKADFYEFGVDVVAASFEQRRGLAEILEWVVKQIPEN 173


>gi|212710611|ref|ZP_03318739.1| hypothetical protein PROVALCAL_01677 [Providencia alcalifaciens DSM
           30120]
 gi|212686692|gb|EEB46220.1| hypothetical protein PROVALCAL_01677 [Providencia alcalifaciens DSM
           30120]
          Length = 492

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 29/228 (12%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN--GYKIVILGHSNAGKSSL 235
           F E ED +   + E  N   + + +    +S+    +   +    K+ I+G  N GKS+L
Sbjct: 162 FIEVEDEEIELTDEEANAAYWAELEAEGELSEEDEDDFDPSTLPIKLAIVGRPNVGKSTL 221

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRT 292
            N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R+     + VEK  + +T
Sbjct: 222 TNRILGEDRVVVFDMPGTTRDSIYIPMERDEREYILIDTAGVRKRGKVTETVEKFSVIKT 281

Query: 293 FLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEEY----- 339
              +E+A+++LL+ +     S +++S            +    K D       E+     
Sbjct: 282 LQAIEDANVVLLVIDAREGISDQDLSLLGFILNAGRSLVIAVNKWDGMKPEDREHVKDML 341

Query: 340 -----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                       H IS+  G G+  L   ++    +  +++  ++ + 
Sbjct: 342 ELRLGFVDFARIHFISALHGSGVGNLFESVQEAYESATRRVGTALLTR 389



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + VE     ++   +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  EGVETHMAAQSLQAIEEADVVLFMVDARAGLMPADEGIAKHLRSRKKKTYLVANKTDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINK-IKSILSNKFKKLPFS 372
                 D           I++  G G+ +LI   +K  +  + +++  +
Sbjct: 125 ANIVVGDFYSLGLGEIYPIAASHGRGVTQLIEHSLKPFIEVEDEEIELT 173


>gi|54020024|ref|YP_115589.1| GTP-binding protein EngA [Mycoplasma hyopneumoniae 232]
 gi|53987197|gb|AAV27398.1| putative GTP-binding protein [Mycoplasma hyopneumoniae 232]
          Length = 433

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 29/186 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ ++G  NAGKSSL N L  ++ +I+++IPGTTRD ++    + G  ++I DTAGIR+
Sbjct: 171 FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRK 230

Query: 280 TDDIVE---KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              + E        R F  ++ ADL L+L +               +F +N   I +  K
Sbjct: 231 KSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFDLRIAGYAFERNKPIILVINK 290

Query: 329 SDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL    T                        IS+ TGE + +LI+ I  + +N  KK+ 
Sbjct: 291 WDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQVKNNLEKKIS 350

Query: 371 FSIPSH 376
            ++ + 
Sbjct: 351 TNLLNQ 356



 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 15/167 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G SN GKS+LFN +A K ++I   +PG TRD +  ++    +   + DT GI+  +
Sbjct: 5   VALVGKSNVGKSTLFNRIAGKKISITDPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIEN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
           +  +     +  + +E AD+++ + +   + +        +        I    K +   
Sbjct: 65  ENFQDLIRIQVQIALEEADILVWVLDGTKEIDSEDHFVLSLLRKSKKKIILAANKLENNK 124

Query: 334 TYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           ++         E    IS+  G G+ + ++++    + K  K     
Sbjct: 125 SFDISLFELGFEKVFPISALHGHGVGDFLDELVGNFNKKNFKNEIFF 171


>gi|289677942|ref|ZP_06498832.1| GTP-binding protein EngA [Pseudomonas syringae pv. syringae FF5]
          Length = 391

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   I    EK  + +T   +++A++++ + +               +       +  
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D  +    ++                 H IS+  G G+  L   +++   +   + 
Sbjct: 313 LNKWDGMTPGERDFVKIELERRLFFVDFADIHFISALHGTGVGNLYQSVQNSFKSAVTRW 372

Query: 370 PFS 372
           P S
Sbjct: 373 PTS 375



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ L +E AD++L L +  +          E    +N     +  K D
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKID 121


>gi|268318173|ref|YP_003291892.1| small GTP-binding protein [Rhodothermus marinus DSM 4252]
 gi|262335707|gb|ACY49504.1| small GTP-binding protein [Rhodothermus marinus DSM 4252]
          Length = 434

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L +   AI  D PG TRD +    +  G    + DT G +  +
Sbjct: 4   VAIVGRPNVGKSTFFNRLTRSHEAITHDQPGVTRDRVYGTAEWNGVRFSVVDTGGYVPNS 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
            DI E+   ++  + +E AD IL + ++        ++  E+    +     +  K+D  
Sbjct: 64  SDIFEQAIREQVQIAIEEADAILFMVDVTTGVTDLDDALAELLRRTDKPVFVVANKADND 123

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
               E               S+ +G G  EL++ +   L  +  +    
Sbjct: 124 ERTWEASTFYQLGLSEVYPISALSGRGTGELLDALVKRLPARNGEAESD 172



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 83/228 (36%), Gaps = 26/228 (11%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   +             ++ I+G  N GKSSL NAL  ++ +IVTDI GTTRD 
Sbjct: 153 ELLDALVKRLPARNGEAESDERPRLAIVGRPNVGKSSLTNALLGQERSIVTDISGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SK 311
           +   L   G  + + DTAG+R    I    E     RT   +   D+ + L +     + 
Sbjct: 213 VHSVLKYYGREIVLVDTAGLRRRSRIRENIEFYATLRTERALRECDVAITLIDATEGLTA 272

Query: 312 KEISFPKNID-----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
           ++I   +  +      + +  K DL                   ++E    I+  L    
Sbjct: 273 QDIRILRQAEELRKGMVLVVNKWDLIEKDANT------------MKEWEEAIRYRLPTWQ 320

Query: 367 KKLPFSIPSHKRHLYH--LSQTVR-YLEMASLNEKDCGLDIIAENLRL 411
                 I +  R   H  L   +R Y             +++ E +R 
Sbjct: 321 HVPLVFISAKTRQRIHRVLEAALRVYENRRQRIATSQLNEVLQEAIRQ 368


>gi|261406031|ref|YP_003242272.1| GTP-binding protein EngA [Paenibacillus sp. Y412MC10]
 gi|329929734|ref|ZP_08283410.1| ribosome biogenesis GTPase Der [Paenibacillus sp. HGF5]
 gi|261282494|gb|ACX64465.1| ribosome-associated GTPase EngA [Paenibacillus sp. Y412MC10]
 gi|328935712|gb|EGG32173.1| ribosome biogenesis GTPase Der [Paenibacillus sp. HGF5]
          Length = 440

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 15/150 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  ++ + +  E   +  ++ ++G  N GKSSL NA+  ++  IV+D+ GTTRD 
Sbjct: 155 DLLDVVVENLPELEDDEYDEDVIRVALIGRPNVGKSSLVNAILGEERVIVSDVAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    + +G    + DTAG+R+   +    EK  + R    +E AD++L+L  IN ++ I
Sbjct: 215 IDTPFEKDGQRYVLIDTAGMRKRGKVYETTEKYSVMRAMRAIERADVVLVL--INGEEGI 272

Query: 315 ----------SFPKNIDFIFIGTKSDLYST 334
                     ++      +F+  K D+   
Sbjct: 273 IEQDKHIAGYAYEAGKASLFVVNKWDMVEK 302



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 18/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS++FN L    +AIV D PG TRD +    +  G    + DT GI  + 
Sbjct: 6   VAIVGRPNVGKSTIFNRLIGDRLAIVEDKPGITRDRIYGSAEWNGKAFSVIDTGGIEIDG 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DD++ K    +  L +E AD+I+ + +  +          +I F      I    K D  
Sbjct: 66  DDMILKSIRMQAELAIEEADVIVFMCDAKTGVTQSDEEVAQILFRSGKPVILSVNKVDNL 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
               + Y+           IS   G G+ +L++ +   L              
Sbjct: 126 KRADDIYEFYSLGFGDPVGISGSHGTGIGDLLDVVVENLPELEDDEYDEDVIR 178


>gi|304389543|ref|ZP_07371506.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327353|gb|EFL94588.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 523

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            L + I   + +    ++ R   +  ++ ++G  N GKSSL N+L+    A+V+++PGTT
Sbjct: 237 DLLDAILQVLPESGATQVTRAEDSTPRVALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTT 296

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK 311
           RD +   L+L+G      DTAG+R         +   + RT   +ENAD+ L+L +    
Sbjct: 297 RDPVDEVLELDGQQWVFVDTAGVRRRVKRSVGADYYSVLRTQAAIENADVALVLLDGGEP 356

Query: 312 KEIS--------FPKNIDFIFIGTKSDLYSTYTE----------------EYDHLISSFT 347
                              + +  K DL   Y +                     IS+ T
Sbjct: 357 LTEQDVRVVNQVIEAGRALVLVNNKWDLVDEYRQGELKYEQESDLAHVSWAPKINISAKT 416

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
           G     +   +++ L     ++P S
Sbjct: 417 GWHTNRITRALRAALEGWTIRIPTS 441



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD +T D    G    + DT G     
Sbjct: 89  LAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVTYDAHWNGRNFHLVDTGGWDVGV 148

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
             +++    +  + ++ AD  L + + N     +  +            + +  K D   
Sbjct: 149 SGLDRAVADQAEIAIDLADAALFVVDANVGATATDERLMKLLRRAGKPVLLVANKVDSER 208

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSN 364
              +               S+  G G  +L++ I  +L  
Sbjct: 209 QEADAAALWNLGMGQPYPISALHGRGTGDLLDAILQVLPE 248


>gi|298346752|ref|YP_003719439.1| GTP-binding protein EngA [Mobiluncus curtisii ATCC 43063]
 gi|298236813|gb|ADI67945.1| GTP-binding protein EngA [Mobiluncus curtisii ATCC 43063]
          Length = 523

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            L + I   + +    ++ R   +  ++ ++G  N GKSSL N+L+    A+V+++PGTT
Sbjct: 237 DLLDAILQVLPESGATQVTRAEDSTPRVALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTT 296

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK 311
           RD +   L+L+G      DTAG+R         +   + RT   +ENAD+ L+L +    
Sbjct: 297 RDPVDEVLELDGQQWVFVDTAGVRRRVKRSVGADYYSVLRTQAAIENADVALVLLDGGEP 356

Query: 312 KEIS--------FPKNIDFIFIGTKSDLYSTYTE----------------EYDHLISSFT 347
                              + +  K DL   Y +                     IS+ T
Sbjct: 357 LTEQDVRVVNQVIEAGRALVLVNNKWDLVDEYRQGELKYEQESDLAHVSWAPKINISAKT 416

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
           G     +   +++ L     ++P S
Sbjct: 417 GWHTNRITRALRAALEGWTIRIPTS 441



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD +T D    G    + DT G     
Sbjct: 89  LAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVTYDAHWNGRNFHLVDTGGWDVGV 148

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
             +++    +  + ++ AD  L + + N     +  +            + +  K D   
Sbjct: 149 SGLDRAVADQAEIAIDLADAALFVVDANVGATATDERLMKLLRRAGKPVLLVANKVDSER 208

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSN 364
              +               S+  G G  +L++ I  +L  
Sbjct: 209 QEADAAALWNLGMGQPYPISALHGRGTGDLLDAILQVLPE 248


>gi|293374967|ref|ZP_06621262.1| ribosome-associated GTPase EngA [Turicibacter sanguinis PC909]
 gi|325843340|ref|ZP_08167923.1| ribosome biogenesis GTPase Der [Turicibacter sp. HGF1]
 gi|292646377|gb|EFF64392.1| ribosome-associated GTPase EngA [Turicibacter sanguinis PC909]
 gi|325489369|gb|EGC91742.1| ribosome biogenesis GTPase Der [Turicibacter sp. HGF1]
          Length = 436

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++ + K  +   +  K  ++G  N GKSSL NAL  ++  IV+DI GTTRD 
Sbjct: 154 DMLDQIVLNMPEKKGMDYEEDVIKFSLIGRPNVGKSSLTNALLGEERVIVSDIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   +G    + DTAG+R+   +    EK  + R    +E +D+ L++ + +     
Sbjct: 214 IDTEFTKDGQKYVVIDTAGMRKRGKVYETTEKYSVLRALSAIERSDVCLIVIDASKGLIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +       + +  K D    
Sbjct: 274 QDKRVAGYAHEAGKAVVIVVNKWDAIEK 301



 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +    V+IV D PG TRD +    +       + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGSRVSIVEDEPGITRDRIYSSGEWLTRKFNVIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           +   ++   +  + ++ AD+I+ +         + +E++   +      + I  K D  +
Sbjct: 66  EPFMRQIKYQAEIAMDEADVIVFVTNARDGITQADQEVANMLYKTKKPVVLIVNKVDDIN 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
              + Y+            S+  G G  +++++I
Sbjct: 126 FKEQIYEFYSLGLGDPIATSAIHGIGFGDMLDQI 159


>gi|270264725|ref|ZP_06192990.1| GTP-binding protein EngA [Serratia odorifera 4Rx13]
 gi|270041408|gb|EFA14507.1| GTP-binding protein EngA [Serratia odorifera 4Rx13]
          Length = 493

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 27/182 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 206 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRK 265

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 266 RGKVTETVEKFSVIKTLQAIEDANVVLLVVDAREGISDQDLSLLGFILNSGRSLVIVVNK 325

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S    E+                 H IS+  G G+  L   +        +++  S
Sbjct: 326 WDGMSEEDREHVKEMLDLRLGFVDFARIHFISALHGSGVGNLFVSVLEAYECATRRVNTS 385

Query: 373 IP 374
           + 
Sbjct: 386 ML 387



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           D VE     ++ L +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  DGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRNRQKATFLVANKTDGMD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358
                 D         H I++  G G+ +LI  +
Sbjct: 125 PDMATADFYSLGLGDVHAIAASHGRGVAQLIEHV 158


>gi|261880032|ref|ZP_06006459.1| ribosome-associated GTPase EngA [Prevotella bergensis DSM 17361]
 gi|270333272|gb|EFA44058.1| ribosome-associated GTPase EngA [Prevotella bergensis DSM 17361]
          Length = 437

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   +      EI     +  ++G  NAGKSSL NA   +D  IVT+I GTTRD 
Sbjct: 154 DLLDLVVKTLPSDNEEEIEEEIPRFAVVGRPNAGKSSLVNAFIGEDRHIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    D  G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRFDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRAIENSDVCILMIDATRGIEA 273

Query: 315 SFPKNIDFI--------FIGTKSDLY-------------------STYTEEYDHLISSFT 347
                   I         +  K DL                    S +++      S+ T
Sbjct: 274 QDMNIFQLIQRNRKSLVVVVNKWDLVEDKDHQVVKTFENAIRERMSPFSDFPIIFASALT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + +++   K +  N+  ++  +
Sbjct: 334 KQRIFKVLETAKQVYINRKARVGTT 358



 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 18/163 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+DI GTTRD      +  G    I DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTRTRHAIVSDIAGTTRDRQYGKCNWNGREFSIVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
           DDI E    ++  +  + ADLIL L ++ +           +        I +  K D  
Sbjct: 65  DDIFEDAIRQQVRIASDEADLILFLVDVETGLTDWDEDVAMVLRCSRKPIILVANKVDNS 124

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                   +          IS+ +G G  +L++ +   L +  
Sbjct: 125 GEAYISAEFYKLGLGDPVSISAISGSGTGDLLDLVVKTLPSDN 167


>gi|332291461|ref|YP_004430070.1| ribosome-associated GTPase EngA [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169547|gb|AEE18802.1| ribosome-associated GTPase EngA [Krokinobacter diaphorus 4H-3-7-5]
          Length = 435

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 11/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   + +    E      +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD 
Sbjct: 154 DLLDAVVEALPEQVEEEEKDELPRFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR    +    E   + R+   +E+AD+ILL+ +     + 
Sbjct: 214 MDTKYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSVRAIEHADVILLVVDATRGFDG 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTE 337
                  ++       + +  K DL    T 
Sbjct: 274 QVQNIFWLAERNRKGIVILVNKWDLVEKETN 304



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRLVQRREAIVDAVSGVTRDRHYGKTDWNGREFTVIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           DD+ E E  K+  L ++ AD I+ + ++            ++             K D  
Sbjct: 65  DDVFEAEIDKQVELAIDEADAIIFMVDVEHGVTGMDEEVAKLLRRSKKPIFLAVNKVDNN 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
               +  +            ++  G G  +L++ +   L 
Sbjct: 125 KRAADAVEFYNLGLGDYYTIAATNGSGTGDLLDAVVEALP 164


>gi|71898142|ref|ZP_00680328.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa
           Ann-1]
 gi|71732116|gb|EAO34172.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa
           Ann-1]
          Length = 465

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 98/267 (36%), Gaps = 41/267 (15%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF-----------SSKEVLND 195
           +   +  L      W+ KL+     +   +D   +  V +             S      
Sbjct: 92  VREGASALDDDILAWLRKLSQPTLLVINKIDGVSDTTVHSEFAHYGFSDVVPVSAAHRQG 151

Query: 196 ILFLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  L   + + + +  +GE          I  +G  N GKS+L N L  ++  IV+D+PG
Sbjct: 152 LDDLIEQVLAWLPERSIGEAFNEDSERIHIAFVGRPNVGKSTLVNRLLGEERMIVSDVPG 211

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN 309
           TTRD +T+DL+ + +  ++ DTAG+R     ++ VEK    +T   +E   + +LL +  
Sbjct: 212 TTRDSITVDLERDEFRYRLVDTAGLRRKSKVEEAVEKFSAFKTLQAIEQCQVAVLLLDAG 271

Query: 310 SK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISS 345
                                +    K D  +TY  E                    +S+
Sbjct: 272 EGVTDQDATVLAAILDAGKALVVAMNKWDGLATYQREQAEDLLSRKLGFVNWAEVVRLSA 331

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS 372
             G GL EL   I     +  ++   S
Sbjct: 332 KHGSGLRELFRAIHRAHVSALRQFSTS 358



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 18/178 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280
           + ++G  N GKS+LFNAL     A+V D PG TRD       ++G     + DT G+   
Sbjct: 5   VALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGGMVGK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDLY 332
           +D +     ++  L    AD++L +  +           +++ +      + +  K D  
Sbjct: 65  EDGLAGATARQARLAAAEADVLLFVVNVREGASALDDDILAWLRKLSQPTLLVINKIDGV 124

Query: 333 STYT--EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           S  T   E+ H        +S+   +GL++LI ++ + L  +     F+  S + H+ 
Sbjct: 125 SDTTVHSEFAHYGFSDVVPVSAAHRQGLDDLIEQVLAWLPERSIGEAFNEDSERIHIA 182


>gi|325855153|ref|ZP_08171776.1| ribosome biogenesis GTPase Der [Prevotella denticola CRIS 18C-A]
 gi|325483890|gb|EGC86834.1| ribosome biogenesis GTPase Der [Prevotella denticola CRIS 18C-A]
          Length = 437

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 11/170 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   +       + ++  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DLLDILLEKLKDAPDESVDQDIPRFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +       G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYTKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRSIENSDVCILMLDATRGIEA 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  +    N   + +  K DL     ++      +   + +   ++
Sbjct: 274 QDMNIFQLIQRNNKSLVVVVNKWDLVEDKNQKVIDTFENAIRKRMAPFVD 323



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 18/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E    K+  +  E ADL+L L +  +           I     +  + +  K D  
Sbjct: 65  DDIFEDAIRKQVLVATEEADLVLFLVDTETGVTDWDEDVAMILRRTKLPVLLVANKVDNS 124

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKK 368
             Y +  +           +S+ TG G  +L++ +   L +   +
Sbjct: 125 GEYYQAAEFYKLGLGEPICVSAATGGGTGDLLDILLEKLKDAPDE 169


>gi|315186467|gb|EFU20227.1| ribosome-associated GTPase EngA [Spirochaeta thermophila DSM 6578]
          Length = 450

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 31/230 (13%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHI--SQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           FS   D   F+S E    I  L+ +I   +   +G           + ILG  N GKS+L
Sbjct: 148 FSLGFDTVCFTSAEHGRGIDELEQEIERRLVVPEGGGDAPSAPEIDVAILGKPNTGKSTL 207

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRT 292
            N L  ++ A+V+D PGTTRD+L       G   +I DTAGIR     +D +E   ++R+
Sbjct: 208 LNTLLGEERALVSDAPGTTRDLLEGRFQYRGRWFRIVDTAGIRRRSRIEDDLEFYSVRRS 267

Query: 293 FLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----- 339
              +E A ++ LL +              ++  +    I +  K D  +    ++     
Sbjct: 268 LKVIEEAHVVFLLIDAQEGLTEQDKKIAAVAQRRGRGVILVLNKWDALTPVPNQFQAMKA 327

Query: 340 -------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                           IS+  GEG+++L++    +     K++     + 
Sbjct: 328 RIRFFFPHMDYAPIVKISARRGEGIDKLLDTALMLRDELGKRVETGPLNR 377



 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 17/168 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           ++VI+G  N GKS+LFN L  +  AI    PG TRD +    +L G  V + DT GI  E
Sbjct: 19  RVVIVGRPNVGKSTLFNRLIGRRKAITHPRPGVTRDAVEETWELGGGRVLLVDTGGITSE 78

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN-------SKKEISFPKNIDFIFIGTKSDLY 332
              I E    +R   EV+ AD++LL+ ++           E+  P     I +  K D  
Sbjct: 79  RGGIFEPLVRERALREVDRADVLLLVLDVTELVPEDEELLELLRPYKERLILVVNKVDNE 138

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +     ++            S+  G G++EL  +I+  L         
Sbjct: 139 AREEMAWNFFSLGFDTVCFTSAEHGRGIDELEQEIERRLVVPEGGGDA 186


>gi|292670962|ref|ZP_06604388.1| GTP-binding protein EngA [Selenomonas noxia ATCC 43541]
 gi|292647583|gb|EFF65555.1| GTP-binding protein EngA [Selenomonas noxia ATCC 43541]
          Length = 428

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 34/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +++   +    +   +   I ++G  N GKSSL N L  +D  IV+D+PGTTRD 
Sbjct: 142 DLLDMVAAAFPRATDADAESDEIAIAVVGRPNVGKSSLVNRLLGEDRVIVSDVPGTTRDA 201

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +      +G    + DTAG+R    I    E+  + R+   ++ A ++L++  IN+ + I
Sbjct: 202 IDTHFTRDGVKYLLIDTAGMRRKGKITLPVERYSVMRSLRAIDRAGVVLMV--INAAEGI 259

Query: 315 S----------FPKNIDFIFIGTKSDLYSTYTEE-------------------YDHLISS 345
                             I +  K D++    ++                        S+
Sbjct: 260 LEQDTKIAGYVHESGKGVIIVVNKWDIFPDKNDKSTLRFTDELRDKFGFLQYAPILYTSA 319

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            TG+ +E +   +K +   +  ++  S+ +
Sbjct: 320 LTGQRIERVTELVKYVAEQQSMRIKTSVLN 349



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 18/151 (11%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGI 289
           GKS+LFN + KK ++IV D+PG TRD + +D +   +   + DT GI  +  D + +   
Sbjct: 2   GKSTLFNQIGKKRISIVDDMPGVTRDRIYMDAEWLNHEFIMIDTGGIEFDESDHILRSMR 61

Query: 290 KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
            +  L +E AD+IL L +  +           I        I    K D +      YD 
Sbjct: 62  SQAELAIEEADVILFLVDGRAGLTSSDEEVARILRRTQKPVILAVNKIDSFDREALIYDF 121

Query: 342 L---------ISSFTGEGLEELINKIKSILS 363
                     IS+     L +L++ + +   
Sbjct: 122 YALGLGDPIPISASNAMNLGDLLDMVAAAFP 152


>gi|315655298|ref|ZP_07908198.1| ribosome-associated GTPase EngA [Mobiluncus curtisii ATCC 51333]
 gi|315490238|gb|EFU79863.1| ribosome-associated GTPase EngA [Mobiluncus curtisii ATCC 51333]
          Length = 523

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            L + I   + +    ++ R   +  ++ ++G  N GKSSL N+L+    A+V+++PGTT
Sbjct: 237 DLLDAILQVLPESGATQVTRAEDSTPRVALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTT 296

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK 311
           RD +   L+L+G      DTAG+R         +   + RT   +ENAD+ L+L +    
Sbjct: 297 RDPVDEVLELDGQQWVFVDTAGVRRRVKRSVGADYYSVLRTQAAIENADVALVLLDGGEP 356

Query: 312 KEIS--------FPKNIDFIFIGTKSDLYSTYTE----------------EYDHLISSFT 347
                              + +  K DL   Y +                     IS+ T
Sbjct: 357 LTEQDVRVVNQVIEAGRALVLVNNKWDLVDEYRQGELKYEQEADLAHVSWAPKINISAKT 416

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
           G     +   +++ L     ++P S
Sbjct: 417 GWHTNRITRALQAALEGWTIRIPTS 441



 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD +  D    G    + DT G     
Sbjct: 89  LAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVMYDAHWNGRNFHLVDTGGWDVGV 148

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
             +++    +  + ++ AD  L + + N     +  +            + +  K D   
Sbjct: 149 SGLDRAVADQAEIAIDLADAALFVVDANVGATATDERLMKLLRRAGKPVLLVANKVDSER 208

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSN 364
              +               S+  G G  +L++ I  +L  
Sbjct: 209 QEADAAALWNLGMGQPYPISALHGRGTGDLLDAILQVLPE 248


>gi|72080412|ref|YP_287470.1| GTP-binding protein EngA [Mycoplasma hyopneumoniae 7448]
          Length = 434

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 29/186 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ ++G  NAGKSSL N L  ++ +I+++IPGTTRD ++    + G  ++I DTAGIR+
Sbjct: 172 FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRK 231

Query: 280 TDDIVE---KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              + E        R F  ++ ADL L+L +               +F +N   I +  K
Sbjct: 232 KSKLAESVDFYAFLRAFRSLDQADLTLILLDACHDFHHFDLRIAGYAFERNKPIILVINK 291

Query: 329 SDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL    T                        IS+ TGE + +LI+ I  + +N  KK+ 
Sbjct: 292 WDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQVKNNLEKKIS 351

Query: 371 FSIPSH 376
            ++ + 
Sbjct: 352 TNLLNQ 357



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 73/167 (43%), Gaps = 15/167 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G SN GKS+LFN +A K ++I   +PG TRD +  ++    +   + DT GI+  +
Sbjct: 6   VALVGKSNVGKSTLFNRIAGKKISITDPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIEN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
           +  +     +  + +E AD+++ + +   + +        +        I +  K +   
Sbjct: 66  ENFQDLVRIQVQIALEEADILVWVLDGTKEIDSEDHFVLSLLRKSKKKIILVANKLENNK 125

Query: 334 TYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           ++         E    IS+  G G+ + ++++    + K  K     
Sbjct: 126 SFDISLFELGFEKVFPISALHGHGVGDFLDELVGNFNKKNFKNEIFF 172


>gi|144575266|gb|AAZ53447.2| GTP-binding protein EngA [Mycoplasma hyopneumoniae 7448]
          Length = 433

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 29/186 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ ++G  NAGKSSL N L  ++ +I+++IPGTTRD ++    + G  ++I DTAGIR+
Sbjct: 171 FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRK 230

Query: 280 TDDIVE---KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              + E        R F  ++ ADL L+L +               +F +N   I +  K
Sbjct: 231 KSKLAESVDFYAFLRAFRSLDQADLTLILLDACHDFHHFDLRIAGYAFERNKPIILVINK 290

Query: 329 SDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL    T                        IS+ TGE + +LI+ I  + +N  KK+ 
Sbjct: 291 WDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQVKNNLEKKIS 350

Query: 371 FSIPSH 376
            ++ + 
Sbjct: 351 TNLLNQ 356



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 73/167 (43%), Gaps = 15/167 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G SN GKS+LFN +A K ++I   +PG TRD +  ++    +   + DT GI+  +
Sbjct: 5   VALVGKSNVGKSTLFNRIAGKKISITDPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIEN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
           +  +     +  + +E AD+++ + +   + +        +        I +  K +   
Sbjct: 65  ENFQDLVRIQVQIALEEADILVWVLDGTKEIDSEDHFVLSLLRKSKKKIILVANKLENNK 124

Query: 334 TYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           ++         E    IS+  G G+ + ++++    + K  K     
Sbjct: 125 SFDISLFELGFEKVFPISALHGHGVGDFLDELVGNFNKKNFKNEIFF 171


>gi|311030574|ref|ZP_07708664.1| GTP-binding protein EngA [Bacillus sp. m3-13]
          Length = 436

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 91/228 (39%), Gaps = 30/228 (13%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  L  A+     I   ++    +++  +            D L    +     L F 
Sbjct: 91  NGREGLTSADEEVAKILYRSKKPVVVAVNKVDNP------DMRDTLYDFYA-----LGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   S    L D   L + +  +  + +  +   +  K  ++G  N GKSSL NAL
Sbjct: 140 EPIPISG-SHGLGLGD---LLDFVIENFPKDEEEDYDEDIIKFSLIGRPNVGKSSLVNAL 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+DI GTTRD +      +G    I DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEERVIVSDIAGTTRDAIDTPYSYDGKDYVIIDTAGMRKKGKVYETTEKYSVLRALRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYST 334
           E +D++L++  IN ++ I          +       + +  K D    
Sbjct: 256 ERSDVVLVV--INGEEGIIEQDKKIAGYAHEAGRAIVIVVNKWDAVEK 301



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 17/156 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+PG TRD +    +       I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSGEWLNQYFNIIDTGGIEISD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD--- 330
                +  ++  + ++ AD+I+ +               +I +      +    K D   
Sbjct: 66  APFMTQIREQAEIAIDEADVIIFMTNGREGLTSADEEVAKILYRSKKPVVVAVNKVDNPD 125

Query: 331 ----LYSTYTEEY--DHLISSFTGEGLEELINKIKS 360
               LY  Y   +     IS   G GL +L++ +  
Sbjct: 126 MRDTLYDFYALGFGEPIPISGSHGLGLGDLLDFVIE 161


>gi|330504675|ref|YP_004381544.1| GTP-binding protein EngA [Pseudomonas mendocina NK-01]
 gi|328918961|gb|AEB59792.1| GTP-binding protein EngA [Pseudomonas mendocina NK-01]
          Length = 492

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G K+ I+G  N GKS+L N +  ++  IV D  GTTRD + I  + +     + DTAG
Sbjct: 194 KDGIKLAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERDDEKYTLIDTAG 253

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R    I    EK  + +T   ++++++++ + +                       +  
Sbjct: 254 VRRRGKIFEAVEKFSVVKTLQAIQDSNVVVFVMDAREGVVDHDLNLLGFVLESGRALVIA 313

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D      ++Y                 H IS+  G G+  L   +++   +   + 
Sbjct: 314 LNKWDGMDQGQKDYVKTELERRLFFVDFADIHFISALHGTGVGHLYKSVQASFKSAITRW 373

Query: 370 PFS 372
           P S
Sbjct: 374 PTS 376



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 13/140 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDAIVGDLSGLTRDRQYGEAKWQGRTYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + ++ +  +++   +E AD +L L +  +          E    +N     +  K D   
Sbjct: 65  EGIDAKMAEQSLQAIEEADAVLFLVDARAGMTASDQMIGEHLRRRNKQSFLVVNKVD--- 121

Query: 334 TYTEEYDHLISSFTGEGLEE 353
               + D   + F+  GL E
Sbjct: 122 --NLDVDLARAEFSPMGLGE 139


>gi|299771613|ref|YP_003733639.1| GTP-binding protein EngA [Acinetobacter sp. DR1]
 gi|298701701|gb|ADI92266.1| GTP-binding protein EngA [Acinetobacter sp. DR1]
          Length = 469

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 111/283 (39%), Gaps = 20/283 (7%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 73  EQSKTAINEADIIIFVVDARAGLLASDEQIARELRTL-GKKIYLVANKVDGVHAEAALVE 131

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
              L   E   V     + V   +  +  ++    S+ +  +    G ++ I+G  N GK
Sbjct: 132 FYKLGMGEPLQVAASHGRGVQQMLEDVLENVPEDESEEEHDKAT--GLRLAIIGRPNVGK 189

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGI 289
           S+L N L  +D  +  D PGTTRD + I  + +G    + DTAG+R     ++++EK  I
Sbjct: 190 STLVNRLLGEDRVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVRRKGKVEEMIEKFSI 249

Query: 290 KRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEEYDH 341
            +T   +++A +++++ +      ++++     +       +    K D  + Y  +   
Sbjct: 250 VKTLQAIKDAHVVVVVLDAREGVVEQDLHLIGYALEAGRAMMIAINKWDNMTEYDRKQCK 309

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           L      + +      + S L        +          HL 
Sbjct: 310 LDVDRRFDFIPWAKVHLISALHGTGVGDMYPTIHRAYDSSHLK 352



 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E +
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGENE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD--- 330
             ++    +++   +  AD+I+ + +  +    S  +              +  K D   
Sbjct: 65  GGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGVH 124

Query: 331 ----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
               L   Y         +++  G G+++++  +   +     +  
Sbjct: 125 AEAALVEFYKLGMGEPLQVAASHGRGVQQMLEDVLENVPEDESEEE 170


>gi|332969954|gb|EGK08954.1| ribosome-associated GTPase EngA [Kingella kingae ATCC 23330]
          Length = 489

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  D+  +       E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 155 LIEDVLENFPDASDEEPENKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + +     I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFERDNKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+   +G+
Sbjct: 275 DATIAGFALEAGRALVIAVNKWDGISDERREQVKRDIARKLYFLDFAKLHFISALKEKGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +  F K+P    + 
Sbjct: 335 DGLFDSIQAAYNAAFIKMPTPKITR 359



 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 65/170 (38%), Gaps = 20/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L K   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTKTKDALVHDLPGLTRDRHYGHAKVGSKPYLVVDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVIFLVDARTGLTPQDKIIADRLRQSPRPVFLAVNKGEGG 124

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 ++ Y     E  ++IS   G+G+  LI  +     +   + P +
Sbjct: 125 NRPVLAAEFYELALGE-PYVISGAHGDGVYYLIEDVLENFPDASDEEPEN 173


>gi|284006778|emb|CBA72042.1| GTP-binding protein [Arsenophonus nasoniae]
          Length = 493

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 96/221 (43%), Gaps = 27/221 (12%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D++    +      L  +  ++   S+ +  +      K+ I+G  N GKS+L N +  +
Sbjct: 170 DMELSEEEANAAYWLAQEEKVALESSEEEAFDPRSLPIKLAIVGRPNVGKSTLTNRILGE 229

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENA 299
           +  +V D+PGTTRD + I ++ +G    + DTAG+R+     + VEK  + +T   +E+A
Sbjct: 230 ERVVVYDLPGTTRDSIYIPMERDGCEYVLIDTAGVRKRGKITETVEKFSVIKTLQSIEDA 289

Query: 300 DLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEE------------- 338
           +++LL+ +     S +++S            +    K D  S    +             
Sbjct: 290 NVVLLVIDARQGISDQDLSLLGFILNAGRSLVIAVNKWDGMSQEDRQSVKDMLDLRLGFI 349

Query: 339 ---YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                H IS+  G G+  L   I+    +  +++  ++ + 
Sbjct: 350 DFAKVHFISALHGSGVGNLFESIQEAYESATRRVGTALLTR 390



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 17/156 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD      +  G    I DT GI  ++
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGKAEFAGQEFIIIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYS 333
           + +E     ++ L +E AD++  + ++ S    +          +  +   +  K+D   
Sbjct: 65  EGIENHMASQSLLAIEEADIVFFMVDVRSGLMPADHAIAKHLRSRKKETYLLANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKS 360
             T   D           I++  G G+ +LI K+ +
Sbjct: 125 IDTVLGDFYALGMRDIYPIAASHGRGVTQLIEKVVA 160


>gi|282878065|ref|ZP_06286870.1| ribosome-associated GTPase EngA [Prevotella buccalis ATCC 35310]
 gi|281299805|gb|EFA92169.1| ribosome-associated GTPase EngA [Prevotella buccalis ATCC 35310]
          Length = 437

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 22/176 (12%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   +       +  +  +  ++G  NAGKSSL NA   +D  IVT+I GTTRD 
Sbjct: 154 DLLDLVLEKLPADDKEALEEDIPRFAVVGRPNAGKSSLINAFIGEDRHIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    D  G+   + DTAGIR    +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRFDKFGFDFYLVDTAGIRRKSKVSEDLEFYSVMRSIRSIENSDVCILMIDATRGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +    +   + +  K DL     E+ DH +       ++   N I+  +
Sbjct: 274 QDMNIFQLIQKNHKSLVVVVNKWDLV----EDKDHKV-------IKTFENAIRERM 318



 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 18/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSRKAIVSDTAGTTRDRQYGKCSWNGREFSVVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLY 332
           DD+ E    ++  +  E ADL+L + ++            +I     +  I +G K D  
Sbjct: 65  DDVFEDAIRRQVIVATEEADLVLFMVDVKNGLTDWDADVAQILRRTKLPVILVGNKVDNS 124

Query: 333 STY--TEEY-------DHLISSFTGEGLEELINKIKSILSNKFKK 368
           + Y    E+          IS+ TG G  +L++ +   L    K+
Sbjct: 125 AEYYTAAEFYRLGLGDPQCISAATGGGTGDLLDLVLEKLPADDKE 169


>gi|327312576|ref|YP_004328013.1| ribosome biogenesis GTPase Der [Prevotella denticola F0289]
 gi|326944058|gb|AEA19943.1| ribosome biogenesis GTPase Der [Prevotella denticola F0289]
          Length = 437

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 11/170 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   +       + ++  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DLLDILLEKLKDAPDESVDQDIPRFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +       G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYTKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRSIENSDVCILMLDATRGIEA 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  +    N   + +  K DL     ++      +   + +   ++
Sbjct: 274 QDMNIFQLIQRNNKSLVVVVNKWDLVEDKNQKVIDTFENAIRKRMAPFVD 323



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 18/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E    K+  +  E ADL+L L +  +           I     +  + +  K D  
Sbjct: 65  DDIFEDAIRKQVLVATEEADLVLFLVDTETGVTDWDEDVAMILRRTKLPVLLVANKVDNS 124

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKK 368
             Y +  +           +S+ TG G  +L++ +   L +   +
Sbjct: 125 GEYYQAAEFYKLGLGEPICVSAATGGGTGDLLDILLEKLKDAPDE 169


>gi|153007833|ref|YP_001369048.1| GTP-binding protein EngA [Ochrobactrum anthropi ATCC 49188]
 gi|166225832|sp|A6WW65|DER_OCHA4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|151559721|gb|ABS13219.1| small GTP-binding protein [Ochrobactrum anthropi ATCC 49188]
          Length = 483

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 18/165 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTVAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           E  +D +E     +T   ++ AD+IL + +  +          E+        + +  K+
Sbjct: 62  EAANDSLEARMRAQTEAAIQEADVILFVVDAKNGLTPTDSTFAEVVRRSGKPVVLVANKA 121

Query: 330 DLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNK 365
           +     +  YD           IS+  G+G+ +L + I  +L  +
Sbjct: 122 EARGAQSGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELLGEE 166



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 13/185 (7%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
              D +  +        D  EEE      + + + +++    +                 
Sbjct: 154 DLRDAIVELLGEERVFADEKEEETADEVFTPKAVGELIGDDIEDPDEEEIPAYDAT--KP 211

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I I+G  NAGKS+L N +  +D  +     G TRD +++D +  G  +K+ DTAG+R 
Sbjct: 212 LRIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISVDWEWRGRKIKLFDTAGLRR 271

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      +  A++++++ +     E        +   +    I    K
Sbjct: 272 KSRVQEKLEKLSVADGLRAIRFAEVVIIVLDATIPFEKQDLQIADLIIREGRAPIIAFNK 331

Query: 329 SDLYS 333
            DL  
Sbjct: 332 WDLIE 336


>gi|328952198|ref|YP_004369532.1| GTP-binding protein engA [Desulfobacca acetoxidans DSM 11109]
 gi|328452522|gb|AEB08351.1| GTP-binding protein engA [Desulfobacca acetoxidans DSM 11109]
          Length = 449

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 3/134 (2%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  ++           G ++ +LG  N GKSS  N +  ++  IV+D PGTTRD 
Sbjct: 153 SLLDAVVRYLPAAPDAGEPPEGIRVAVLGRPNVGKSSFINRVLGEERLIVSDTPGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +   L  +     + DTAGIR    I    E+  I +    ++ A+++LLL +       
Sbjct: 213 IDAPLIWDNRPYVLIDTAGIRRRSRIHQNLERGMIWQALRALQRAEVVLLLLDAQEGLTE 272

Query: 315 SFPKNIDFIFIGTK 328
              + ++FI +  K
Sbjct: 273 QDLRILNFIAVAGK 286



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKS+LFN L ++  A+V D PG TRD L  D+  E +   + DT G  +T+
Sbjct: 5   VALIGRTNVGKSTLFNRLTRQSRALVDDQPGVTRDRLYGDVTWEDHAFLLIDTGGFGDTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPK-----NIDFIFIGTKSDLYS 333
           D +     ++  L    ADL+L + +   +    ++   +         + +  K D   
Sbjct: 65  DALSSRVRQQAELAAGEADLVLFMVDGRQEIQPDDLEVAQYLRRSGKPVLLVINKIDGPK 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLP 370
             T   +            S+  G G+  L++ +   L        
Sbjct: 125 QETRLPEFYRFGLTPLFPISAQHGLGVGSLLDAVVRYLPAAPDAGE 170


>gi|167623303|ref|YP_001673597.1| GTP-binding protein EngA [Shewanella halifaxensis HAW-EB4]
 gi|189037161|sp|B0TLI8|DER_SHEHH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|167353325|gb|ABZ75938.1| small GTP-binding protein [Shewanella halifaxensis HAW-EB4]
          Length = 490

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 83/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ +G    + DTAG+R 
Sbjct: 200 IKLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERQGREYVLIDTAGVRR 259

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
             +  + VEK  + +T   VE+++++LL+ +     +++++             +    K
Sbjct: 260 RSKVHETVEKFSVIKTLKAVEDSNVVLLVIDAREGIAEQDLGLLGFVLNAGRALVIAVNK 319

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D      ++                  H IS+  G G+  L   I+    +  +++  S
Sbjct: 320 WDGIDQNVKDRVKTELDRRLGFIDFARIHFISALHGTGVGHLFESIEEAYDSATRRVSTS 379

Query: 373 IPSH 376
           + + 
Sbjct: 380 MLTR 383



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 8/129 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAHLAGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + +E    +++   +E AD++L L +  +     +++  ++          +  K D   
Sbjct: 65  EGIETRMAEQSLAAIEEADVVLFLTDARAGLTAADLAIAQHLRSREKTTFVVANKVDGID 124

Query: 334 TYTEEYDHL 342
             +   +  
Sbjct: 125 ADSACAEFW 133


>gi|315641243|ref|ZP_07896320.1| ribosome-associated GTPase EngA [Enterococcus italicus DSM 15952]
 gi|315483010|gb|EFU73529.1| ribosome-associated GTPase EngA [Enterococcus italicus DSM 15952]
          Length = 442

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 31/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ++   H  +    E   +  +  ++G  N GKSSL NA+  +D  IV+D+ GTTRD 
Sbjct: 160 DVLDEAVKHFGE-DTEEEDDSTIRFSLIGRPNVGKSSLINAILGEDRVIVSDVEGTTRDA 218

Query: 258 LTIDLDLE-GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK-- 311
           +      E G    + DTAG+R+   +    EK  + R    +E +D++L++   +    
Sbjct: 219 IDTHFTSESGQEFTMIDTAGMRKRGKVYESTEKYSVMRAMRAIERSDVVLVVLNADEGIR 278

Query: 312 ------KEISFPKNIDFIFIGTKSDLYST-----------YTEEYDH-------LISSFT 347
                    +  +    I I  K DL                EE+ +        +S+ T
Sbjct: 279 EQDKKIAGYAHEEGRGIIIIVNKWDLVKKDTNTMRDFEKEIREEFQYLDYAPILFVSAMT 338

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPS 375
            + L +L   I+S+  N+  ++P ++ +
Sbjct: 339 KQRLNQLPEMIESVSMNQSMRVPSAVLN 366



 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 17/178 (9%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EII     I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    I D
Sbjct: 4   EIIMAKPTIAIVGRPNVGKSTVFNRIAGERISIVEDTPGVTRDRIYATGEWLGKDFSIID 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFI 325
           T GI  +D+   ++   +  + ++ AD+I+ +            S   + +      I  
Sbjct: 64  TGGIDLSDEPFMEQIKHQAEIAIDEADVIVFVTSAREGITDADESVAHLLYRSKKPVILA 123

Query: 326 GTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             K D      E Y+           IS   G GL +++++         ++   S  
Sbjct: 124 VNKVDNPEMRAEIYEFYSLGLGEPYPISGSHGLGLGDVLDEAVKHFGEDTEEEDDSTI 181


>gi|294788428|ref|ZP_06753671.1| ribosome-associated GTPase EngA [Simonsiella muelleri ATCC 29453]
 gi|294483859|gb|EFG31543.1| ribosome-associated GTPase EngA [Simonsiella muelleri ATCC 29453]
          Length = 489

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 105/282 (37%), Gaps = 36/282 (12%)

Query: 127 EAESLADLISSET---EMQRRLS--MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           EA+++  L+ + T      + ++  +   S  +     +       I +    +L   E 
Sbjct: 82  EADAVIFLVDARTGLTPQDKIIADRLRQSSRPVFLAVNKGEGGNRPILAAEFYELALGEP 141

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
             +    S    + + +L  D+          +         ++G  N GKS+L NA+  
Sbjct: 142 YVI----SGAHGDGVYYLIEDVLEKFPDTSDEQPENKHPVFAVIGRPNVGKSTLVNAILG 197

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVEN 298
           ++  I  D+ GTTRD + ID + EG    I DTAG+R+    D+ VEK  + +    +E 
Sbjct: 198 EERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRKRGKVDEAVEKFSVIKAMQAIEA 257

Query: 299 ADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---------- 340
           A++ +L+ +               +       +    K D  S                 
Sbjct: 258 ANVAVLVLDAQQDIADQDATIAGFALEAGRALVIAVNKWDGISEERRNDIKRDIARKLYF 317

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                 H IS+   +G++ L + I++     F K+P    + 
Sbjct: 318 LDFAKFHYISALKEKGIDGLFDSIQAAYDAAFIKMPTPKITR 359



 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 20/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L K   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTKTKDALVHDLPGLTRDRHYGHGRVGSKPYLVVDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +     +        K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVIFLVDARTGLTPQDKIIADRLRQSSRPVFLAVNKGEGG 124

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 ++ Y     E  ++IS   G+G+  LI  +     +   + P +
Sbjct: 125 NRPILAAEFYELALGE-PYVISGAHGDGVYYLIEDVLEKFPDTSDEQPEN 173


>gi|282848929|ref|ZP_06258319.1| ribosome-associated GTPase EngA [Veillonella parvula ATCC 17745]
 gi|282581434|gb|EFB86827.1| ribosome-associated GTPase EngA [Veillonella parvula ATCC 17745]
          Length = 444

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 15/176 (8%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            + L ++  L +D   H           +   + I+G  N GKSSL NAL  +D  IV+D
Sbjct: 149 AKNLMNLGDLLDDTVKHFPPVGTNVDDEDTIHVAIIGRPNVGKSSLTNALLGQDRVIVSD 208

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLK 306
           + GTTRD +      E     + DTAG+R     ++ VE+  I R+   V+ AD+++L+ 
Sbjct: 209 VAGTTRDSIDTYWTHENQKFVLIDTAGMRRKSKIEEAVERYSIVRSLRSVDRADIVVLVL 268

Query: 307 EINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           +               ++      + +  K DL     E+ D     FT +  +EL
Sbjct: 269 DAQDGVTEQDKKIAGYAYEAGKGVVIVVNKWDLV----EKDDKTTLRFTEDIYDEL 320



 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 20/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + ++G  N GKS+LFNA+  K ++IV DIPG TRD +  D +       + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKE---ISFPKNIDFIFIGTKSD 330
           E   ++ K    +  L +E AD+IL + +     + + +E   I        + +  K D
Sbjct: 66  ENSHVIPKMMRLQAELAIEEADVILFVVDGKQGIVPADEEVANILRASGKPVVLVVNKID 125

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELIN 356
             +     Y+            S+     L +L++
Sbjct: 126 SVNQEPNIYEFYNLGLGDPIGISAKNLMNLGDLLD 160


>gi|323435972|ref|ZP_01049346.2| GTP-binding protein EngA [Dokdonia donghaensis MED134]
 gi|321496287|gb|EAQ39318.2| GTP-binding protein EngA [Dokdonia donghaensis MED134]
          Length = 450

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 11/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   + + +         +  ++G  NAGKSS  NAL  ++  IVTDI GTTRD 
Sbjct: 169 DLLDAVVEALPEKEEESEEDELPRFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDA 228

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR    +    E   + R+   +E+AD++LL+ +     + 
Sbjct: 229 MDTKYNRYGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSVRAIEHADVVLLVVDATRGFDG 288

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTE 337
                  ++       + +  K DL    T 
Sbjct: 289 QVQNIFWLAERNRKGIVILVNKWDLVEKKTN 319



 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      D  G    + DT G +  +
Sbjct: 20  VAIVGRPNVGKSTFFNRLVQRREAIVDAVSGVTRDRHYGKTDWNGREFTVIDTGGYVVGS 79

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           DDI E E  K+  L ++ AD I+ + ++             +             K D  
Sbjct: 80  DDIFEAEIDKQVELAIDEADAIIFMVDVEHGITGMDEEVANLLRRSKKPIFLAVNKVDNN 139

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
               +  +            ++  G G  +L++ +   L 
Sbjct: 140 KRAADAVEFYNLGLGDFYTIAATNGSGTGDLLDAVVEALP 179


>gi|297584434|ref|YP_003700214.1| ribosome-associated GTPase EngA [Bacillus selenitireducens MLS10]
 gi|297142891|gb|ADH99648.1| ribosome-associated GTPase EngA [Bacillus selenitireducens MLS10]
          Length = 446

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +  ++   Q +  +   +  ++ ++G  N GKSS+ NA+  ++  IV+DI GTTRD 
Sbjct: 162 DLLDTAAASFPQNQGDDYHPDTVRMSLIGRPNVGKSSMVNAILGEERVIVSDIAGTTRDA 221

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +      +G    + DTAG+R+   +    EK  + R    +E +D++L++ +     I 
Sbjct: 222 IDTSFTKDGKDYVVIDTAGMRKRGKVYETTEKYSVLRALKAIERSDVVLVVLDGEEGIIE 281

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYST 334
             K+I   +       + +  K D    
Sbjct: 282 QDKKIAGYAHEAGRAIVIVVNKWDAVEK 309



 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 19/179 (10%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +++   G++++    + I+G  N GKS+LFN +  + ++IV D PG TRD +    +   
Sbjct: 1   MNESGEGKLVK--PVLAIVGRPNVGKSTLFNRVVGERISIVEDKPGVTRDRIYSSAEWLT 58

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPK 318
           +   I DT GI  +D+ + ++   +  L ++ AD+I  +               +I    
Sbjct: 59  HEFFIIDTGGIEISDEPLLEQMRYQAELAIDEADVICFVVNGRDGMTAADEEVAQILHRS 118

Query: 319 NIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKK 368
               +    K D  S +   Y+         H +S   G GL +L++   +        
Sbjct: 119 KKPIVLAVNKIDDPSMFERLYEFYSLGVGDPHPVSGTHGLGLGDLLDTAAASFPQNQGD 177


>gi|294791776|ref|ZP_06756924.1| ribosome-associated GTPase EngA [Veillonella sp. 6_1_27]
 gi|294793637|ref|ZP_06758774.1| ribosome-associated GTPase EngA [Veillonella sp. 3_1_44]
 gi|294455207|gb|EFG23579.1| ribosome-associated GTPase EngA [Veillonella sp. 3_1_44]
 gi|294457006|gb|EFG25368.1| ribosome-associated GTPase EngA [Veillonella sp. 6_1_27]
          Length = 444

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 15/176 (8%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            + L ++  L +D   H           +   + I+G  N GKSSL NAL  +D  IV+D
Sbjct: 149 AKNLMNLGDLLDDTVKHFPPVGTNVDDEDTIHVAIIGRPNVGKSSLTNALLGQDRVIVSD 208

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLK 306
           + GTTRD +      E     + DTAG+R     ++ VE+  I R+   V+ AD+++L+ 
Sbjct: 209 VAGTTRDSIDTYWTHENQKFVLIDTAGMRRKSKIEEAVERYSIVRSLRSVDRADIVVLVL 268

Query: 307 EINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           +               ++      + +  K DL     E+ D     FT +  +EL
Sbjct: 269 DAQDGVTEQDKKIAGYAYEAGKGVVIVVNKWDLV----EKDDKTTLRFTEDIYDEL 320



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 20/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFNA+  K ++IV DIPG TRD +  D +       + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65

Query: 282 D---IVEKEGIKRTFLEVENADLILLLKE-----INSKKE---ISFPKNIDFIFIGTKSD 330
           D   ++ K    +  L +E AD+IL + +     + + +E   I        + +  K D
Sbjct: 66  DNSHVIPKMMRLQAELAIEEADVILFVVDGKQGIVPADEEVANILRASGKPVVLVVNKID 125

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELIN 356
             +     Y+            S+     L +L++
Sbjct: 126 SVNQEPNIYEFYNLGLGDPIGISAKNLMNLGDLLD 160


>gi|314933657|ref|ZP_07841022.1| ribosome-associated GTPase EngA [Staphylococcus caprae C87]
 gi|313653807|gb|EFS17564.1| ribosome-associated GTPase EngA [Staphylococcus caprae C87]
          Length = 436

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 65/148 (43%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  +  +        +  ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD 
Sbjct: 154 DLLDAVVENFGEETEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   EG    + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 VDTEYSYEGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEEGKAIVIVVNKWDTVEK 301



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + ++ AD+I+ +  +            ++ +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK 368
              + YD           IS   G GL +L++ +      + + 
Sbjct: 126 MRNDIYDFYSLGFGDPYPISGSHGLGLGDLLDAVVENFGEETED 169


>gi|226312035|ref|YP_002771929.1| GTP-binding protein EngA [Brevibacillus brevis NBRC 100599]
 gi|254783139|sp|C0ZCB6|DER_BREBN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226094983|dbj|BAH43425.1| GTP-binding protein EngA [Brevibacillus brevis NBRC 100599]
          Length = 437

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 19/171 (11%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +  ++  H       E   +  ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD 
Sbjct: 155 DMLEEVCQHFPAEDDEEKRDDVIRVSIIGRPNVGKSSLTNAILGEERVIVSEVAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    + +     + DTAG+R+   +    EK  + R    +E++D++L++  IN ++ I
Sbjct: 215 IDTPFERDDQSYVLVDTAGMRKRGKVYETTEKYSVMRAMRSIEDSDVVLVV--INGEEGI 272

Query: 315 ----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
                     +       I I  K D      E+ D  +  FT    EE  
Sbjct: 273 IEQDKKIAGYAHEAGRGVIIIVNKWDAI----EKDDKTMQRFTELIREEFK 319



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN L  + VAIV D+PG TRD L    +   +   + DT GI   +
Sbjct: 6   VAIVGRPNVGKSTIFNRLIGERVAIVEDMPGVTRDRLYGKGEWLTHTFHVIDTGGIEFGE 65

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNI---DFIFIGTKSDLY 332
            D +  +   +  L ++ AD+I+++ +      ++  E+S   N      +    K+D  
Sbjct: 66  TDEILTQMRYQAELAIDEADVIIMIADSRTGVTDADVELSRMLNRTGKPVVLAVNKADNP 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
               + YD           +S   G GL +++ ++      +
Sbjct: 126 EMRADIYDFYSLGLGEPFPVSGSHGLGLGDMLEEVCQHFPAE 167


>gi|119775495|ref|YP_928235.1| GTP-binding protein EngA [Shewanella amazonensis SB2B]
 gi|166225853|sp|A1S859|DER_SHEAM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|119767995|gb|ABM00566.1| small GTP-binding protein domain [Shewanella amazonensis SB2B]
          Length = 488

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 27/190 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
            +     K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ +G    + D
Sbjct: 194 RLAEQPIKLAIIGKPNVGKSTLTNRILGEERVVVYDQPGTTRDSVYIPMERDGRNYVLID 253

Query: 274 TAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDF 322
           TAG+R    +    EK  + +T   VE+++++LL+ + +   +++++             
Sbjct: 254 TAGVRRRARVHEVIEKFSVIKTLKAVEDSNVVLLVIDAHEGIAEQDLGLLGFVLNSGRAL 313

Query: 323 IFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKF 366
           +    K      D+      E D           H IS+  G G+  L   I+    +  
Sbjct: 314 VLAVNKWDGLDQDVKDRVKTELDRRLGFIDFARIHFISALHGTGVGHLFESIEEAYDSAT 373

Query: 367 KKLPFSIPSH 376
           +++  S+ + 
Sbjct: 374 RRVSTSMLTR 383



 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADYPGLTRDRKYGRAHLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSD 330
           + +E +  +++   +E AD++L + +  +    +          ++     +  K D
Sbjct: 65  EGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLAIAQHLRSRDKITFVVANKVD 121


>gi|327403775|ref|YP_004344613.1| GTP-binding protein engA [Fluviicola taffensis DSM 16823]
 gi|327319283|gb|AEA43775.1| GTP-binding protein engA [Fluviicola taffensis DSM 16823]
          Length = 436

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGK-LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            + +++  +  +    GE   N   I ++G  N GKSS+ NA   ++  IVTDI GTTRD
Sbjct: 154 EILDEVVKYFEKEDPRGEEEANLPHIAVVGKPNVGKSSMINAFTGEERNIVTDISGTTRD 213

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINS--- 310
            +       G+   + DTAGIR+   +   +E   + R+   +EN+D+ + + +      
Sbjct: 214 SIDTRYKAFGFDFMLIDTAGIRKKAKVTEDIEYYSVLRSVRTIENSDICIFMIDATEGIQ 273

Query: 311 KKEISF-----PKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFT 347
           K++++        +   + +  K DL                     Y +      S+ T
Sbjct: 274 KQDLTIYYMIEKNHKGVVVLVNKWDLVEKDTMTAVEYEKKLREDLAPYNDVPIIFTSALT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + + + K   +  N+ +K+  S
Sbjct: 334 KQRIHKALEKAMEVFENRTRKISTS 358



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 18/171 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  I I+G  N GKS+LFN L + + AIV +I G TRD +    +  G    + DT G +
Sbjct: 2   GNIIAIVGRPNVGKSTLFNRLTESNHAIVKEISGVTRDRIYGRGEWNGIPFSVIDTGGYV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           R ++DI E E  K+  + ++ A++IL + +  +          +I        + I  K 
Sbjct: 62  RGSEDIFEGEIRKQVEIAIDEANVILFVVDATTGIVDLDETVAKILRKSKKKVLVIANKV 121

Query: 330 DLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
           D         +            S+  G G  E+++++      +  +   
Sbjct: 122 DNNDRVGMSAEFWSFGLGEVFDLSAANGSGTGEILDEVVKYFEKEDPRGEE 172


>gi|20807571|ref|NP_622742.1| thiophene degradation protein F [Thermoanaerobacter tengcongensis
          MB4]
 gi|20516108|gb|AAM24346.1| thiophene degradation protein F [Thermoanaerobacter tengcongensis
          MB4]
          Length = 93

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 4  EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL----- 56
          E +TI A+ST    + I I+R+SG     +   I +  KKK      +    +G      
Sbjct: 2  EFDTIAAISTSPGEAGIGIVRMSGDGALDIISRIFRFYKKKDVKNVKTHTLHYGHIVDPD 61

Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGG 88
           G + D+ L+ +   P ++T ED  E + HGG
Sbjct: 62 TGEVYDEVLVSIMKKPNTYTREDIVEINCHGG 93


>gi|171463406|ref|YP_001797519.1| small GTP-binding protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|238689056|sp|B1XU78|DER_POLNS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|171192944|gb|ACB43905.1| small GTP-binding protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 454

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 98/251 (39%), Gaps = 38/251 (15%)

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILF--LKNDISSH-ISQGKLGEIIRNG---YKIVILGH 227
              DF E    + F       D +   + + + S  +++    E++ +     KI ++G 
Sbjct: 129 VTADFHELGLGEPFPISSAHGDGVRGLIDDALDSLGVAEPDEDELVNDPNRPMKIAVVGR 188

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIV 284
            N GKS+L N L  ++  I  D+PGTTRD + +  +  G    + DTAG+R      + +
Sbjct: 189 PNVGKSTLINKLIGEERVIAFDMPGTTRDAIEVPFERNGKPYILVDTAGLRRRGKVFEAI 248

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           EK  + +T   + + ++++L+ +                       +    K D   TY 
Sbjct: 249 EKFSVVKTLQAIADCNVVILMLDAQQDISEQDAHIAGFIVEAGRALVVAVNKWDGIDTYV 308

Query: 337 EEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +E                  H IS+  G GL++L   + +  +    KLP       R  
Sbjct: 309 KERARLEIAQKLRFLDFANVHPISAKKGTGLKDLFKDVDAAYAAAMAKLPAP-----RLT 363

Query: 381 YHLSQTVRYLE 391
             L + + + +
Sbjct: 364 RILQEAIEHQQ 374



 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 62/176 (35%), Gaps = 20/176 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G SN GKS+LFN L +   A+V D  G TRD       +        DT G     
Sbjct: 5   ITIVGRSNVGKSTLFNRLTRSRDALVADFSGLTRDRHYGKCRIGERAFICVDTGGFEPVA 64

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIG--TK---- 328
              +  E  K+T   V  +D+++ L +         +    F +      I    K    
Sbjct: 65  KTGIVAEMAKQTKQVVAESDIVIFLVDGRLGMAPQDRVIADFLRKTGRPVILAVNKTEGM 124

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                 +D +     E    ISS  G+G+  LI+     L          +    R
Sbjct: 125 QASVVTADFHELGLGE-PFPISSAHGDGVRGLIDDALDSLGVAEPDEDELVNDPNR 179


>gi|95930679|ref|ZP_01313413.1| Small GTP-binding protein domain [Desulfuromonas acetoxidans DSM
           684]
 gi|95133331|gb|EAT14996.1| Small GTP-binding protein domain [Desulfuromonas acetoxidans DSM
           684]
          Length = 436

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  +  AIV D PG TRD    D+        + DT G     
Sbjct: 4   VAIVGRPNVGKSTLFNRILGERKAIVEDYPGVTRDRNYADVTRYDKPFTLIDTGGFEPVS 63

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           ++ +  +  +++ L +E AD+IL + +             E+    +   +F+  K D  
Sbjct: 64  EVRMLVQMREQSQLAIEEADVILFVMDGRDGLTPSDEEVAEMLRRVDKPVLFVVNKVDGD 123

Query: 333 STYTE---------EYDHLISSFTGEGLEELINKIKSILSN 364
               +         E+  + S+  G G+ EL+  I   L  
Sbjct: 124 KQEEQAAEFYSLGIEHFFVTSAEHGRGMGELMAAILDELPE 164



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 68/169 (40%), Gaps = 11/169 (6%)

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           +A   +S   +    +S E    +  L   I   + + K  E      ++ ++G  N GK
Sbjct: 128 QAAEFYSLGIEHFFVTSAEHGRGMGELMAAILDELPEVKTVEDDSAEVRLAVIGRPNVGK 187

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGI 289
           SSL N L   +  +     GTTRD +            + DTAGIR    +    EK  +
Sbjct: 188 SSLVNKLLGYERVVANPTAGTTRDSVDTPFTYNNQRYVLIDTAGIRRKGKVSQKLEKYSV 247

Query: 290 KRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD 330
            +    ++ A +++++ +     ++++++       +    + +  K D
Sbjct: 248 VQALKGMDRAHVVMVVIDAEEGITEQDLTIAGYAYDRGRAVVLVVNKWD 296


>gi|291279462|ref|YP_003496297.1| small GTP-binding protein [Deferribacter desulfuricans SSM1]
 gi|290754164|dbj|BAI80541.1| small GTP-binding protein [Deferribacter desulfuricans SSM1]
          Length = 438

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 17/169 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN LA K +AIV D+PG TRD L    + EG   KI DT G   
Sbjct: 2   FTVGIIGRPNVGKSTLFNRLAGKRIAIVDDMPGVTRDRLEYIAEWEGKKFKIVDTCGYDL 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSD- 330
            +++++KE IK+ +  ++ AD  +LL +              I   +   FI +  K D 
Sbjct: 62  REELLKKEMIKQFYASLDEADFFVLLVDAKEGLHPLDEMVCNILREREKKFIVVANKVDN 121

Query: 331 --LYSTYTE------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             L S   +      E    IS+  G+ ++ L++KI        +   F
Sbjct: 122 EKLQSFVADFYQLGVEEIIPISATHGKNVDILLDKIIENYVEDEEVTDF 170



 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 102/245 (41%), Gaps = 32/245 (13%)

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
             AD      E++   S+    N  + L   I +++   ++ + I +  K+V++G  N G
Sbjct: 127 FVADFYQLGVEEIIPISATHGKNVDILLDKIIENYVEDEEVTDFI-DSIKVVVVGRPNVG 185

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD----DIVEKE 287
           KSSL N+    +  IVT IPGTTRD +    +       + DTAGIR+      D +EK 
Sbjct: 186 KSSLINSWLGDERLIVTPIPGTTRDSVDTYFEYNSKKYTLIDTAGIRKKSVMFKDKIEKY 245

Query: 288 GIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTKSDLYST----- 334
           G  R++  +  AD+ + L +     +++++     ++      +    K D  +      
Sbjct: 246 GFYRSYDAIRRADIAVGLIDATEGVTERDVKVIADAYEAGRPVVLAINKWDAINKDEKVG 305

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHL 380
                                IS+ T + + ++ + + ++ +   K++  S +     H+
Sbjct: 306 KKFKEEIAEKFKFLNNPPVIFISALTRKNIFKIFDAVDNLYAEYSKRIQTSKLNKLLEHV 365

Query: 381 YHLSQ 385
             L Q
Sbjct: 366 QMLHQ 370


>gi|329120372|ref|ZP_08249039.1| ribosome-associated GTPase EngA [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462327|gb|EGF08653.1| ribosome-associated GTPase EngA [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 490

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 101/282 (35%), Gaps = 36/282 (12%)

Query: 127 EAESLADLISSET---EMQRRLS--MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           EA+++  L+ + T      + ++  +      +     +       + +    +L   E 
Sbjct: 82  EADAVVFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNKGEGGRHDVLAAEFYELALGE- 140

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
                  S    + +  L  DI       +            ++G  N GKS+L NA+  
Sbjct: 141 ---PRVISGAHGDGVYHLIEDILDSFPDAQEETATEKHPVFAVIGRPNVGKSTLVNAILG 197

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVEN 298
           ++  I  D+ GTTRD + ID + EG    I DTAG+R   + D+ VEK  + +    VE 
Sbjct: 198 EERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEA 257

Query: 299 ADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---------- 340
           +++ +L+ +               +       +    K D  S                 
Sbjct: 258 SNVAVLVLDAQQDIADQDATIAGFALEAGRALVVAVNKWDGISEERRNDIKRDIARKLYF 317

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                 H IS+   +G++ L + I++       K+P    + 
Sbjct: 318 LDFAKFHFISALKEKGIDGLFDSIQAAYDAAMIKMPTPKITR 359



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       L      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSKDALVHDLPGLTRDRHYGHGRLGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -SDLYSTYTEEY----DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             D+ +    E       +IS   G+G+  LI  I     +  ++ 
Sbjct: 125 RHDVLAAEFYELALGEPRVISGAHGDGVYHLIEDILDSFPDAQEET 170


>gi|320527698|ref|ZP_08028870.1| ribosome-associated GTPase EngA [Solobacterium moorei F0204]
 gi|320131941|gb|EFW24499.1| ribosome-associated GTPase EngA [Solobacterium moorei F0204]
          Length = 437

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 12/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ++    + +    E    G  I ++G  N GKSSL NA+ K+  +IV+++ GTTRD 
Sbjct: 154 DVLDECLRLMPEEDK-EDKHTGIHIAVIGEPNVGKSSLVNAILKEKRSIVSNVQGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +      EG    I DTAGIR+   +    EK  + R    +E  D+ L + +  +    
Sbjct: 213 VDTPFVYEGKPYVIVDTAGIRKRGKVYESVEKYSVLRAMTAIERCDVALFVIDGEAGIRE 272

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +       + +  K D    
Sbjct: 273 QDKHVAGYACEAGKPIVIVVNKWDAVEK 300



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A   V+IV D PG TRD +    +  G   ++ DT GI+  D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGSRVSIVEDFPGVTRDRIYTTGEWTGKKFQLIDTGGIQLAD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFIGTKSDLYS 333
              ++E   +  + +  AD+IL +         + +    I   +    +      D  +
Sbjct: 66  QPYQEEIRAQVQIAMNEADVILFVVNGKMGMTDDDSYIAGILQKQTKPVVLAVNMIDDST 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKK 368
                Y+            S   G G+ +++++   ++  + K+
Sbjct: 126 RMMNIYEFYNLGLGDPIAVSGVHGIGIGDVLDECLRLMPEEDKE 169


>gi|126663301|ref|ZP_01734299.1| GTP-binding protein EngA [Flavobacteria bacterium BAL38]
 gi|126624959|gb|EAZ95649.1| GTP-binding protein EngA [Flavobacteria bacterium BAL38]
          Length = 436

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 12/151 (7%)

Query: 198 FLKNDISSHISQ-GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + +   + +  ++ E +    +  ++G  NAGKSS  NAL  +D  +VTDI GTTRD
Sbjct: 154 ELLDKLVEVLPEMPEVTEEVEPLPRFCVVGRPNAGKSSFINALIGEDRFVVTDIAGTTRD 213

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
            +    +  G+   + DTAGIR    +    E   + R+   +E++D+ LL+ +     E
Sbjct: 214 AIDTRYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSVRAIEHSDVCLLVIDATRGFE 273

Query: 314 --------ISFPKNIDFIFIGTKSDLYSTYT 336
                   ++       + +  K DL    T
Sbjct: 274 GQDQSIFWLAEKNRKGVVILVNKWDLVEKDT 304



 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      +  G    + DT G I+ +
Sbjct: 5   VAIVGRPNVGKSTFFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYIKGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           DDI E E  K+  L ++ AD I+ + ++        +   ++        + +  K D  
Sbjct: 65  DDIFEAEIRKQVELAIDEADAIIFVVDVEEGITPMDDEVAKLLRKVKKPVLLVINKVDNA 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
               +  +            S  +G G  EL++K+  +L    +     
Sbjct: 125 MREKDAVEFYNLGLGEYFTISGMSGSGTGELLDKLVEVLPEMPEVTEEV 173


>gi|302380361|ref|ZP_07268831.1| ribosome-associated GTPase EngA [Finegoldia magna ACS-171-V-Col3]
 gi|303233791|ref|ZP_07320445.1| ribosome-associated GTPase EngA [Finegoldia magna BVS033A4]
 gi|302311851|gb|EFK93862.1| ribosome-associated GTPase EngA [Finegoldia magna ACS-171-V-Col3]
 gi|302495225|gb|EFL54977.1| ribosome-associated GTPase EngA [Finegoldia magna BVS033A4]
          Length = 438

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 11/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L   + S        E   +  K+ ++G  N GKSSL N L  ++  IVTDI GTTRD 
Sbjct: 155 DLLEAVVSKFDDNSNTESDDDITKVCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++ +G      DTAG+R+    D  VE+  + RT   ++ +D+ +L+ +       
Sbjct: 215 IDSKINYKGNEYVFIDTAGLRKRKKIDTEVERYSVVRTLSAIDRSDICVLMIDATEGVSE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE 337
                   +  +    I +  K DL    T 
Sbjct: 275 QDTKILGYAHDQGKAMIILVNKWDLVEKQTN 305



 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G +N GKS+LFN L KK +AI  D PG TRD L ++ + +     + DT G+  ++
Sbjct: 6   VAIVGRANVGKSTLFNKLIKKRIAITQDDPGVTRDRLYMEAEWQNKYFTVVDTGGLEPKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           ++I+ K   K+T L +E AD+IL + +             ++        I +  K D  
Sbjct: 66  NEIITKNIKKQTELAIETADVILFMVDGKQGITPIDMEVADMLRRTKKSVILVVNKIDHI 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 YD            S+    GL +L+  + S   +        
Sbjct: 126 KQQDNVYDFYNLGFYEIFPISASNSMGLGDLLEAVVSKFDDNSNTESDD 174


>gi|253581911|ref|ZP_04859135.1| GTP-binding protein [Fusobacterium varium ATCC 27725]
 gi|251836260|gb|EES64797.1| GTP-binding protein [Fusobacterium varium ATCC 27725]
          Length = 441

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + ++  I +  L E   +  K+ I+G  NAGKSSL N L+ ++  IV+DI GTTRD 
Sbjct: 155 DMLDMVTEMIEKIDLPEEEEDVLKLAIIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +  +     I DTAGIR     ++ +E   + R    ++ AD+ +L+ +       
Sbjct: 215 IDTIVQYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCILMLDGKEGLTE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                  I+  +    + +  K DL   
Sbjct: 275 QDKRIAGIAAEELKPIVVVVNKWDLVDK 302



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L    +AIV D+PG TRD L  + +  G    + DT G+   +
Sbjct: 5   VAIVGRPNVGKSTLFNNLVGDRIAIVDDMPGVTRDRLYRETEWNGVEFVVVDTGGLEPRN 64

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTKSD-L 331
           +      IK +  + +  AD+IL + +  S      +EI++    K    I    K D  
Sbjct: 65  NEFMMTKIKEQAEVAMNEADVILFVVDGKSGVNPLDEEIAYILRKKQKPIILCVNKIDNF 124

Query: 332 YSTYTEEYDHLISSFTGEGLEELI 355
                + YD       G G E LI
Sbjct: 125 LQQQDDVYDFW-----GLGFEHLI 143


>gi|257453876|ref|ZP_05619154.1| ribosome-associated GTPase EngA [Enhydrobacter aerosaccus SK60]
 gi|257448803|gb|EEV23768.1| ribosome-associated GTPase EngA [Enhydrobacter aerosaccus SK60]
          Length = 467

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 15/224 (6%)

Query: 152 GELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK 211
           G+   L    +D +          L F E        +      +  L   +++++    
Sbjct: 113 GKPVFLAANKMDGVHEAAIHEFYALGFGE----PFPMAASHGRGVGNLLEAVTANMPTDD 168

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E   +G +I I+G  N GKS+L N L  ++  +V D+PGTTRD + I  + +     +
Sbjct: 169 QEEQAPDGLRIAIIGRPNVGKSTLVNRLLGEERVVVFDMPGTTRDSIYIPYERDNRHYVL 228

Query: 272 SDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNI 320
            DTAG+R     D+ VEK  + +T   +++A +++++ +     + +++     +     
Sbjct: 229 IDTAGVRRRGRIDEKVEKFSVVKTLQAIKDAHVVIVVIDAQEGITDQDLNLLGYALEAGR 288

Query: 321 DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
             +    K D      + +  +        +  +   + S L  
Sbjct: 289 AMVLAINKWDGLDQDQKNFVKIEMDRRFNFIPYVKVHLISALHG 332



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 19/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D+ G TRD    D   E     + DT GI E D
Sbjct: 5   VALIGRPNVGKSTLFNQLTRSRQALVADLAGLTRDRQYGDATFEEKSFIVIDTGGIGEVD 64

Query: 282 D---IVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSD 330
           +    ++     ++   +  AD+I+ + +    I    E+   +             K D
Sbjct: 65  EGDGTIDDYMSHQSHTAIHEADIIVFVVDSRAGITGADEVIAKQLHTLGKPVFLAANKMD 124

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
            ++     E+          +++  G G+  L+  + + +    ++ 
Sbjct: 125 GVHEAAIHEFYALGFGEPFPMAASHGRGVGNLLEAVTANMPTDDQEE 171


>gi|21674598|ref|NP_662663.1| GTP-binding protein EngA [Chlorobium tepidum TLS]
 gi|26006711|sp|Q8KBK3|DER_CHLTE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|21647797|gb|AAM73005.1| GTP-binding protein [Chlorobium tepidum TLS]
          Length = 437

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 117/316 (37%), Gaps = 21/316 (6%)

Query: 97  EELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ---RRLSMEGMSGE 153
           + L              S+   E     + +A+++  ++ + + +      ++       
Sbjct: 51  QFLLMDTGGYAPENDTLSKAMLEQTMRAIEDADAVIFIVDARSGLTYLDLDIAKILQKTF 110

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213
                    +K+ + +  +EA              S      +  +  D+ + +   +  
Sbjct: 111 KDKKIFFVANKVDNPQVALEAQSLVKSGFTEPYLISARDGAGVADMLEDVLNSLPCPEGE 170

Query: 214 EIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           EI  +   K+ +LG  N GKSSL NAL   +  IV+D+PGTTRD +   L   G    + 
Sbjct: 171 EIEEDDSIKLAVLGRPNVGKSSLVNALLGTERHIVSDVPGTTRDAIDSVLKRNGEEYVLI 230

Query: 273 DTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNID 321
           DTAG+R+    D  +E     RT   +E  D+ L+L +     E        ++  +   
Sbjct: 231 DTAGLRKRTKIDAGIEFYSSLRTARAIERCDVALVLLDARLGLESQDMKIIHMAIERKKG 290

Query: 322 FIFIGTKSDLYSTYTEE----YDHLISSFTGEGLEELI--NKIKSILSNKFKKLPFSIPS 375
            + +  K DL    ++      D+L +     G   +I  + +      +       I  
Sbjct: 291 VLILVNKWDLVEKDSKTSKAFTDNLQNQLGNIGYIPVIFTSALTKKNCYRAIDTAAEIAL 350

Query: 376 HKRHLYHLSQTVRYLE 391
           ++R     S   R+L+
Sbjct: 351 NRRQKISTSNLNRFLQ 366



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + ++  AIV   PG TRD      + +G    + DT G    +
Sbjct: 5   IALVGRPNVGKSTLFNRILRQKSAIVDPTPGVTRDRHISPGEWQGKQFLLMDTGGYAPEN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFP-------KNIDFIFIGTKSDL 331
           D + K  +++T   +E+AD ++ + +  S     ++          K+    F+  K D 
Sbjct: 65  DTLSKAMLEQTMRAIEDADAVIFIVDARSGLTYLDLDIAKILQKTFKDKKIFFVANKVDN 124

Query: 332 YSTYTEEYDHLISSFT 347
                E    + S FT
Sbjct: 125 PQVALEAQSLVKSGFT 140


>gi|304436527|ref|ZP_07396500.1| ribosome-associated GTPase EngA [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370470|gb|EFM24122.1| ribosome-associated GTPase EngA [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 442

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 99/263 (37%), Gaps = 34/263 (12%)

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS------MEGMSG--ELSSLYG 159
           A          + G I+  E++ +   + S+ E+    +      ++G +G         
Sbjct: 46  AEWLNHEFTIIDTGGIEFDESDHILRSMRSQAELAMEEADVILFLVDGRAGLTTSDEEVA 105

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL-----------FLKNDISSHIS 208
           + + +           +D  E E +        L D +            L + + +   
Sbjct: 106 RLLRRTKKPVILAVNKIDSFEREALIYDFYSLGLGDPIPISASNAMNLGDLLDAVVAAFP 165

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           +        +   I ++G  N GKSSL N L  ++  IV+D+PGTTRD +      +G  
Sbjct: 166 EEPAESQETDEIAIAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDTHFTKDGAK 225

Query: 269 VKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEIS---------- 315
             + DTAG+R    I    E+  + R+   ++ A ++L++  IN+ + I           
Sbjct: 226 YLLIDTAGMRRKGKITLPVERYSVMRSLRAIDRAGVVLMV--INAAEGILEQDTKIAGYV 283

Query: 316 FPKNIDFIFIGTKSDLYSTYTEE 338
                  I +  K D++    ++
Sbjct: 284 HESGKGVIIVVNKWDIFPEKNDK 306



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN + KK V+IV D+PG TRD + +D +   +   I DT GI  + 
Sbjct: 6   VAVVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYLDAEWLNHEFTIIDTGGIEFDE 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D + +    +  L +E AD+IL L +  +           +        I    K D +
Sbjct: 66  SDHILRSMRSQAELAMEEADVILFLVDGRAGLTTSDEEVARLLRRTKKPVILAVNKIDSF 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 YD           IS+     L +L++ + +    +  +   +
Sbjct: 126 EREALIYDFYSLGLGDPIPISASNAMNLGDLLDAVVAAFPEEPAESQET 174


>gi|212634303|ref|YP_002310828.1| GTP-binding protein EngA [Shewanella piezotolerans WP3]
 gi|226741196|sp|B8CKR5|DER_SHEPW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|212555787|gb|ACJ28241.1| GTP-binding protein EngA [Shewanella piezotolerans WP3]
          Length = 490

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ EG    + DTAG+R 
Sbjct: 200 IKLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMEREGREYVLIDTAGVRR 259

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTK 328
             +  + VEK  + +T   VE+ +++LL+ +     +++++     +       +    K
Sbjct: 260 RSKVHETVEKFSVIKTLKAVEDCNVVLLIIDAREGIAEQDLGLLGFALNAGRALVIAVNK 319

Query: 329 SD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D     +      E D           H IS+  G G+  L   I+    +  +++  S
Sbjct: 320 WDGIDQEVKDRVKSELDRRLGFIDFARIHFISALHGTGVGHLYESIEEAYDSATRRVSTS 379

Query: 373 IPSH 376
           + + 
Sbjct: 380 MLTR 383



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 8/129 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAHLAGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + +E    +++   +E AD++L + +  +     +++  ++          +  K D   
Sbjct: 65  EGIETRMAEQSLAAIEEADVVLFMTDARAGLTAADLAIAQHLRSREKTTFVVANKVDGID 124

Query: 334 TYTEEYDHL 342
             +   +  
Sbjct: 125 ADSACAEFW 133


>gi|269215396|ref|ZP_06159250.1| ribosome-associated GTPase EngA [Slackia exigua ATCC 700122]
 gi|269130883|gb|EEZ61958.1| ribosome-associated GTPase EngA [Slackia exigua ATCC 700122]
          Length = 440

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 99/251 (39%), Gaps = 14/251 (5%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRL-SMEGMSGELSS 156
            L     + + +   F     E   +   EA+++  ++  +T +     ++  +  + S 
Sbjct: 56  TLVDTGGIEMGDDDVFQGSIREQAFVGAEEADAIVFIVDGKTGIAADDDAVARILRKTSK 115

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ--GKLGE 214
                ++K+ +          +          S E  +    L + +   I     +  E
Sbjct: 116 PVFLTVNKMDNPADESAMWEFYQLGLGDPWPISSEHGHGTGDLLDAVIDVIRDIPEREPE 175

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
              N   + I+G  NAGKSSL N L  K+ +IV+D+ GTTRD +   ++ EG    I DT
Sbjct: 176 ERENIVNVAIIGRPNAGKSSLTNRLIGKERSIVSDVAGTTRDAIDTTIEHEGTFYTIVDT 235

Query: 275 AGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEI---SFPKNIDFI 323
           AG+R     D  VE  G  R    ++ AD+ LL+ +      +  + +   +  +     
Sbjct: 236 AGLRRKAQIDQDVEYYGFVRAMRAIDRADVALLVVDATLGLTDQDQRVAGYAHERGCALA 295

Query: 324 FIGTKSDLYST 334
            +  K D   +
Sbjct: 296 ILLNKRDAVES 306



 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+  N +   + AIV ++ G TRD    + +  G    + DT GI    
Sbjct: 8   VAVVGRPNVGKSTFVNRITHGNDAIVHEMRGVTRDRSYHEAEWSGVHFTLVDTGGIEMGD 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           DD+ +    ++ F+  E AD I+ + +         ++   I    +        K D  
Sbjct: 68  DDVFQGSIREQAFVGAEEADAIVFIVDGKTGIAADDDAVARILRKTSKPVFLTVNKMDNP 127

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSN 364
           +  +  ++            SS  G G  +L++ +  ++ +
Sbjct: 128 ADESAMWEFYQLGLGDPWPISSEHGHGTGDLLDAVIDVIRD 168


>gi|224541354|ref|ZP_03681893.1| hypothetical protein CATMIT_00514 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525688|gb|EEF94793.1| hypothetical protein CATMIT_00514 [Catenibacterium mitsuokai DSM
           15897]
          Length = 435

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 30/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++   +   +         K+ I+G  N GKSSL NA+  +D  IV++I GTTRD 
Sbjct: 154 DLLDEVIRVLPDEEDEFEEDE-IKVSIIGRPNVGKSSLTNAILGEDRVIVSNIEGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +    + +GY  +I DTAG+R+   +    EK  + R    VE +D+IL + +     I 
Sbjct: 213 IDTAFEKDGYKYRIIDTAGMRKKGKVYENIEKYSVLRALKAVEQSDVILCVVDGERGIIE 272

Query: 310 SKKEI---SFPKNIDFIFIGTKSD-----------LYSTYTEEYDH-------LISSFTG 348
             K +   +       + +  K D           +     E++ +        +S+   
Sbjct: 273 QDKHVAGYAHELGKSVVLVVNKWDAVTKDEKTMAKMEKNLREQFKYLDYARIAFVSALKK 332

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + +  L + I     N  K++  S+ +
Sbjct: 333 QRINTLFDLIVEAYMNAHKRVTTSVLN 359



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 21/161 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G +N GKS+LFN +  + V+IV D+PG TRD +           +I DT GI   +
Sbjct: 6   VAIVGRANVGKSTLFNRIIGERVSIVEDVPGVTRDRIYAKASWLTKEFRIIDTGGIELKN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI----------DFIFIGTKSDL 331
               ++   +  + +E AD+I+ +  +N ++ ++   N             +    K D 
Sbjct: 66  ADFTEQIKTQAEIAIEEADVIIFV--VNGREGLTSEDNFVARMLQKSGKPVLLAVNKIDD 123

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
            +     YD           +SS  G G+ +L++++  +L 
Sbjct: 124 VAFRDNIYDFYSLGIGEPIPVSSAHGIGVGDLLDEVIRVLP 164


>gi|187478830|ref|YP_786854.1| GTP-binding protein EngA [Bordetella avium 197N]
 gi|115423416|emb|CAJ49950.1| GTP-binding protein [Bordetella avium 197N]
          Length = 451

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 61/300 (20%), Positives = 115/300 (38%), Gaps = 43/300 (14%)

Query: 89  IAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSME 148
               +GIL E+A+     +A              I+  + E +A L+    + +  L++ 
Sbjct: 64  PVAKDGILAEMARQTRQAIAEADVVVFLVDARAGINAHDHE-IARLLRKSGQQRVLLAVN 122

Query: 149 GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI---SS 205
              G                 +    +L   E   +       V++ I     D+   + 
Sbjct: 123 KAEGMNEGK-----------ATSDFFELGLGEPHPISAAHGDGVVDLIESALADLVPPAD 171

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            I+  + GE+ ++  K+ I+G  N GKS+L N L  ++  I  D+PGTTRD + I+ + +
Sbjct: 172 EIADAEEGEV-QHRIKLAIVGRPNVGKSTLINTLMGEERVIAFDMPGTTRDAIEIEFERD 230

Query: 266 GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEI 314
           G    + DTAG+R+   +    EK  + +T   +E ++++LL+ +  S+           
Sbjct: 231 GRQYTLIDTAGLRKRGKVFEAVEKFSVIKTLQAIEASNVVLLMLDAQSEISEQDAHIAGF 290

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKI 358
                   +    K D       E                  H IS+  G+G+  L+  +
Sbjct: 291 VLETGRAVVVAINKWDGLDDDQRERIEREFQRKLRFLTFARMHTISALKGQGIRPLLKSV 350



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 71/183 (38%), Gaps = 21/183 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+LFN L +   A+V D  G TRD    +  +      + DT G     
Sbjct: 7   VALVGRPNVGKSTLFNRLTRSRAALVADYSGLTRDRHYGEGRVGDIPFIVIDTGGFEPVA 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---------KKEISFPKNIDFIFIGTK--- 328
            D +  E  ++T   +  AD+++ L +  +          + +        +    K   
Sbjct: 67  KDGILAEMARQTRQAIAEADVVVFLVDARAGINAHDHEIARLLRKSGQQRVLLAVNKAEG 126

Query: 329 -------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                  SD +     E  H IS+  G+G+ +LI    + L     ++  +     +H  
Sbjct: 127 MNEGKATSDFFELGLGE-PHPISAAHGDGVVDLIESALADLVPPADEIADAEEGEVQHRI 185

Query: 382 HLS 384
            L+
Sbjct: 186 KLA 188


>gi|261365613|ref|ZP_05978496.1| ribosome-associated GTPase EngA [Neisseria mucosa ATCC 25996]
 gi|288565845|gb|EFC87405.1| ribosome-associated GTPase EngA [Neisseria mucosa ATCC 25996]
          Length = 485

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  +I     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 155 LIEEILEKFPEPEAEETEVKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFALEAGRALVVAVNKWDGISEEWREQIKRDISRKLYFLDFAKFHFISALKERGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+     + 
Sbjct: 335 DGLFDSIQAAYNAAMIKMSTPKITR 359



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 63/167 (37%), Gaps = 20/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                 ++ Y     E  H+IS   G+G+  LI +I         + 
Sbjct: 125 NRAVLAAEFYELALGE-PHVISGAHGDGVYYLIEEILEKFPEPEAEE 170


>gi|148380476|ref|YP_001255017.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932865|ref|YP_001384700.1| GTP-binding protein EngA [Clostridium botulinum A str. ATCC 19397]
 gi|153936714|ref|YP_001388221.1| GTP-binding protein EngA [Clostridium botulinum A str. Hall]
 gi|166224327|sp|A7FW89|DER_CLOB1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166224328|sp|A5I4V0|DER_CLOBH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|148289960|emb|CAL84073.1| putative GTP-binding protein EngA [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928909|gb|ABS34409.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932628|gb|ABS38127.1| ribosome-associated GTPase EngA [Clostridium botulinum A str. Hall]
          Length = 439

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 97/258 (37%), Gaps = 29/258 (11%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  M  +        ++K+  ++    A   ++         S      +  + + +  +
Sbjct: 104 VAQMLRKSKKPVVLVVNKIDKLKDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEY 163

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
               +          I  +G  N GKSSL N L  ++  IV+DIPGTTRD +   +D + 
Sbjct: 164 FKDDESAGEDDERINIAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTDF 223

Query: 267 YLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----- 318
               + DTAG+R      + +E+  + RT+  +E AD+ +L+ +          K     
Sbjct: 224 GEFTLIDTAGLRRKSKVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQKIIGYA 283

Query: 319 ---NIDFIFIGTKSDLYSTYTEEYDH------------------LISSFTGEGLEELINK 357
              N   + I  K DL     +  D                    IS+ TG+ + +++  
Sbjct: 284 HDINKAILVIVNKWDLVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQRVVKVLQT 343

Query: 358 IKSILSNKFKKLPFSIPS 375
            K    N  K++   + +
Sbjct: 344 AKECYDNYNKRVKTGVLN 361



 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K ++IV D PG TRD +  + +   Y   + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           +DI+  +  ++  + +E A++I+ L +       + KE++          + +  K D  
Sbjct: 66  EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADKEVAQMLRKSKKPVVLVVNKIDKL 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 Y+            SS    GL ++++++     +        
Sbjct: 126 KDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEYFKDDESAGEDD 174


>gi|227535137|ref|ZP_03965186.1| GTP-binding protein engA [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187182|gb|EEI67249.1| GTP-binding protein engA [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 445

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +  G    + DT GI   D
Sbjct: 16  LAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGTSEWLGKEFAVIDTGGIDLGD 75

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+IL L +I S          +I +      +    K D   
Sbjct: 76  EPFLAQIKDQAEIAIDEADVILFLADIESGVTDADERVAQILYRAKKPVVLAVNKVDNPE 135

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD            S   G GL ++++ + +   ++ K +     
Sbjct: 136 RRQDIYDFYSLGFGEPYPLSGTHGIGLGDVLDAVLAAFPSEDKSVEDDSI 185



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 90/214 (42%), Gaps = 35/214 (16%)

Query: 195 DILFLKNDISSHISQ--GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
             + L + + + ++    +   +  +  K  ++G  N GKSSL NA+  ++  IV+ I G
Sbjct: 158 HGIGLGDVLDAVLAAFPSEDKSVEDDSIKFSLIGRPNVGKSSLVNAILGENRVIVSPIEG 217

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN 309
           TTRD +    +       + DTAGIR+   +    EK  + R    ++ +D++L +  IN
Sbjct: 218 TTRDAIDTKFEAVDETFTMIDTAGIRKRGKVYENTEKYAVMRALRAIDRSDVVLFV--IN 275

Query: 310 SKKEI----------SFPKNIDFIFIGTKSDLYST-----------YTEEY-------DH 341
           +++ I          +       I +  K D                 +E+         
Sbjct: 276 AEEGIREQDKKVAGYAHEAGRGIIIVVNKWDTVEKDNHTMKDFENLIRQEFQYLDYAPII 335

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            +S+ T + L+ L   I ++  N+ +++  S+ +
Sbjct: 336 FVSAKTKQRLQSLPAMIVAVSENQTRRIQSSVLN 369


>gi|290968707|ref|ZP_06560245.1| ribosome-associated GTPase EngA [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781360|gb|EFD93950.1| ribosome-associated GTPase EngA [Megasphaera genomosp. type_1 str.
           28L]
          Length = 443

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 11/184 (5%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
           ++K+  +   +     ++         S   L ++  L + +  HI      E   +   
Sbjct: 120 VNKIDSVEQEMNMYEFYALGMGDPIGVSAVNLMNLGDLLDSVLQHIQHLPTPEEREDTIH 179

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSS+ NAL  ++  IV+++PGTTRD +            + DTAG+R   
Sbjct: 180 IALVGRPNVGKSSMTNALLGQERVIVSNVPGTTRDSIDTYWTYNDTSFVLIDTAGMRRKA 239

Query: 282 DIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
            +    E+  + R    V+ +D+ +L+ +          K            I +  K D
Sbjct: 240 KVDIPVERYSVVRALRAVDRSDVAVLVLDAQDGVTEQDKKIAGYIHEAGKGCIIVVNKWD 299

Query: 331 LYST 334
           L   
Sbjct: 300 LIDK 303



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 19/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFNA+ KK +AIV DIPG TRD +  D +  G    + DT GI   D
Sbjct: 6   VAVVGRPNVGKSTLFNAIVKKRIAIVEDIPGVTRDRIYFDAEWLGREFTMIDTGGIEFVD 65

Query: 282 --DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDL 331
             D +  +   +  L +  AD+IL + +  +  +    +            + +  K D 
Sbjct: 66  AADRIFTDMRYQAELAIREADVILFVVDGKTGMQPQDEEVANILRTCGKPVLLVVNKIDS 125

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370
                  Y+           +S+     L +L++ +   + +      
Sbjct: 126 VEQEMNMYEFYALGMGDPIGVSAVNLMNLGDLLDSVLQHIQHLPTPEE 173


>gi|145589468|ref|YP_001156065.1| small GTP-binding protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|189037153|sp|A4SYD7|DER_POLSQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145047874|gb|ABP34501.1| small GTP-binding protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 454

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 96/251 (38%), Gaps = 38/251 (15%)

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILF--LKNDISSH-ISQGKLGEIIRNG---YKIVILGH 227
              DF E    + F       D +   + + + S  I++    E+  +     KI ++G 
Sbjct: 129 VTADFHELGLGEPFPISSAHGDGVKGLIDDALDSLGIAEPDEDELANDPNRPMKIAVVGR 188

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIV 284
            N GKS+L N L  ++  I  D+PGTTRD + +  +  G    + DTAG+R      + +
Sbjct: 189 PNVGKSTLINKLIGEERVIAFDMPGTTRDAIEVPFERNGKPYILVDTAGLRRRGKVFEAI 248

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           EK  + +T   + + ++++L+ +                       +    K D    Y 
Sbjct: 249 EKFSVVKTLQAIADCNVVILMLDAQQDISEQDAHIAGFIVEAGRALVVAVNKWDGLDAYV 308

Query: 337 EEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +E                  H IS+  G GL++L   + +  +    KLP       R  
Sbjct: 309 KERARLEIAQKLRFLDFANVHPISAKKGTGLKDLFKDVDAAYAAAMAKLPTP-----RLT 363

Query: 381 YHLSQTVRYLE 391
             L + + + +
Sbjct: 364 RILQEAIEHQQ 374



 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 61/176 (34%), Gaps = 20/176 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L +   A+V D  G TRD       +        DT G     
Sbjct: 5   ITIVGRPNVGKSTLFNRLTRSRDALVADFSGLTRDRHYGKGRIGERAFICVDTGGFEPVA 64

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIG--TK---- 328
              +  E  K+T   V  +D+++ L +         +    F +      I    K    
Sbjct: 65  KTGIVAEMAKQTKQAVAESDIVIFLVDGRLGMAPQDRVIADFLRKTGRPVILAVNKTEGM 124

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                 +D +     E    ISS  G+G++ LI+     L               R
Sbjct: 125 QSGIVTADFHELGLGE-PFPISSAHGDGVKGLIDDALDSLGIAEPDEDELANDPNR 179


>gi|307299325|ref|ZP_07579126.1| ribosome-associated GTPase EngA [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915121|gb|EFN45507.1| ribosome-associated GTPase EngA [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 441

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 28/212 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +   + +      L     +  KI I+G  NAGKSS+FN +     ++VT++ GTTRD 
Sbjct: 159 EIFERLETLGHSVHLESNDESELKIAIVGKPNAGKSSIFNWIVGSPRSLVTEVSGTTRDT 218

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV----EKEGIKRTFLEVENADLILLLKEINSK-- 311
           +   ++++G  +   DTAGIR+   +     E   + R    +E +D+++++ +      
Sbjct: 219 VDETVEVDGIPITFIDTAGIRKKSKVKVMNVEYYSVMRAIDALERSDIMVMVIDSADGVG 278

Query: 312 ------KEISFPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGE 349
                   ++       I +  K DL      +                     S+ TGE
Sbjct: 279 NQDQRIAGLAEKNGKATIAVFNKCDLVDERRRKALLRTFKQDLYFIDYSPVIFTSTLTGE 338

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           G++ELI+ IK +      +LP  + +     Y
Sbjct: 339 GMDELIDSIKLVSKKIDLRLPTGLLNTILQRY 370



 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 20/161 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           ++I+G  N GKS+LFN L     AIV D+PG TRD     ++ +    ++ DT G+ E  
Sbjct: 4   VLIIGRPNVGKSTLFNRLVGGRRAIVDDLPGVTRDFTVGRVNWQQRTFQLVDTCGLFENP 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSD-- 330
           ++IVE++  + T   +   DLIL + +      ++ + ++     + I+ IF+  K +  
Sbjct: 64  ENIVEEKMKEVTLELLSEGDLILFVVDGRFGLTSADQVLADYLRKQRIEVIFVANKVENP 123

Query: 331 --LYSTYTEEY-------DHLISSFTGEGLEELINKIKSIL 362
              YS    E           IS+  G  ++ L+++I   L
Sbjct: 124 ESFYSNMGNEIFSLGFGDPIKISAAHGLNIDLLLDEIFERL 164


>gi|120437317|ref|YP_863003.1| GTP-binding protein EngA [Gramella forsetii KT0803]
 gi|166198719|sp|A0M5P1|DER_GRAFK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|117579467|emb|CAL67936.1| GTP-binding protein EngA [Gramella forsetii KT0803]
          Length = 434

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 11/128 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGIRRK 235

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
             +    E   + R+   +EN D+ L++ +     +        ++   +   + +  K 
Sbjct: 236 SKVKENLEFYSVMRSVRAIENCDVCLVVLDATRGFDGQVQNIFWLAQRNHKGIVILVNKW 295

Query: 330 DLYSTYTE 337
           DL    T 
Sbjct: 296 DLVDKETN 303



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 18/174 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+ FN L ++  AI+  + G TRD      D  G    + DT G +
Sbjct: 2   GNIVAIVGRPNVGKSTFFNRLIQRREAIIDSVSGVTRDRHYGKSDWNGKKFSLIDTGGYV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           + +DDI E E  K+  L ++ AD I+ + ++ S           +    N   +    K 
Sbjct: 62  KGSDDIFEAEIDKQVELAIDEADAIIFIVDVESGVTSMDEEVANLLRRVNKPVLLAVNKV 121

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D         +           I+S  G G  +L++ +   L    ++    +P
Sbjct: 122 DNNKRLANAVEFYSLGLGEYFPIASTNGSGTGDLLDALIEALPEIEEEDESELP 175


>gi|1162972|gb|AAB02035.1| similar to thdF genes from E. coli, B. subtilis and P. putida;
           possible involvement in thiophene and furan oxidation
           [Rhodobacter sphaeroides]
          Length = 98

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 59/99 (59%), Gaps = 2/99 (2%)

Query: 6   ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65
           +TI+A+++    + ++++RLSGP   +  +       P  R A+LR     +G +LD+ L
Sbjct: 2   DTIYALASARGKAGVAVLRLSGPRSHEAVQA-FGVPLPSLRHAALRRLTW-NGEVLDEAL 59

Query: 66  LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN 104
           +++F +  SFTGE SAE H+HG  A V+ +L  L+ +P 
Sbjct: 60  VLLFGAGASFTGETSAELHLHGSPAAVSSVLRVLSGLPG 98


>gi|28199496|ref|NP_779810.1| GTP-binding protein EngA [Xylella fastidiosa Temecula1]
 gi|182682229|ref|YP_001830389.1| GTP-binding protein EngA [Xylella fastidiosa M23]
 gi|32129520|sp|Q87B41|DER_XYLFT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238691082|sp|B2I7V0|DER_XYLF2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|28057611|gb|AAO29459.1| GTP-binding protein [Xylella fastidiosa Temecula1]
 gi|182632339|gb|ACB93115.1| small GTP-binding protein [Xylella fastidiosa M23]
 gi|307578503|gb|ADN62472.1| GTP-binding protein EngA [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 465

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 97/267 (36%), Gaps = 41/267 (15%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF-----------SSKEVLND 195
           +   +  L      W+ KL+     +   +D   +  V +             S      
Sbjct: 92  VREGASALDDDILAWLRKLSQPTLLVINKIDGVSDTTVHSEFAHYGFSDVVPVSAAHRQG 151

Query: 196 ILFLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  L   + + + +  +GE          I  +G  N GKS+L N L  ++  IV+D+PG
Sbjct: 152 LDDLIEQVLAWLPERSIGEAFNEDSERIHIAFVGRPNVGKSTLVNRLLGEERMIVSDVPG 211

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN 309
           TTRD +T+DL+ +    ++ DTAG+R     ++ VEK    +T   +E   + +LL +  
Sbjct: 212 TTRDSITVDLERDELRYRLVDTAGLRRKSKVEEAVEKFSAFKTLQAIEQCQVAVLLLDAG 271

Query: 310 SK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISS 345
                                +    K D  +TY  E                    +S+
Sbjct: 272 EGVTDQDATVLAAILDAGKALVVAMNKWDGLATYQREQAEDLLSRKLGFVNWAEVVRLSA 331

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS 372
             G GL EL   I     +  ++   S
Sbjct: 332 KHGSGLRELFRAIHRAHVSALRQFSTS 358



 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 18/178 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280
           + ++G  N GKS+LFNAL     A+V D PG TRD       ++G     + DT G+   
Sbjct: 5   VALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGGMVGK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDLY 332
           +D +     ++  L V  AD++L +  +           +++ +      + +  K D  
Sbjct: 65  EDGLAGATARQARLAVAEADVVLFVVNVREGASALDDDILAWLRKLSQPTLLVINKIDGV 124

Query: 333 STYT--EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           S  T   E+ H        +S+   +GL++LI ++ + L  +     F+  S + H+ 
Sbjct: 125 SDTTVHSEFAHYGFSDVVPVSAAHRQGLDDLIEQVLAWLPERSIGEAFNEDSERIHIA 182


>gi|192362315|ref|YP_001981972.1| GTP-binding protein EngA [Cellvibrio japonicus Ueda107]
 gi|238692428|sp|B3PDM5|DER_CELJU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|190688480|gb|ACE86158.1| GTP-binding protein EngA [Cellvibrio japonicus Ueda107]
          Length = 466

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 89/240 (37%), Gaps = 29/240 (12%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            I      +L   E         + V + +  +  +      + + GE    G KI I+G
Sbjct: 126 DIALAPFYELGMGEVHPTTATHGRGVRSLMEDVLAEYPEIPEEEQQGEAT--GIKIAIVG 183

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-- 284
             N GKS+L N L  +D  +V D PGTTRD + I+         + DTAG+R   +I   
Sbjct: 184 RPNVGKSTLVNRLLGEDRVVVYDQPGTTRDSIYINYTRFDKPYTLIDTAGVRRRKNIDLA 243

Query: 285 -EKEGIKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYST- 334
            EK  I +T   + +A++++L+ + +    ++++     +       +    K D     
Sbjct: 244 VEKFSIVKTMQAIADANVVILVMDASEGIVEQDLHLMGTAIEAGRALVIALNKWDGLDES 303

Query: 335 ---------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                                H IS+  G G+  L   I+    +   +   +  +    
Sbjct: 304 HKYYVKNELERRLRFVDFANIHFISALHGTGVGNLYKSIEQAYQSATDRFSTNYLTRILQ 363



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD    +  LE     + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTNSRDALVADYPGLTRDRKYGEARLENRRFIVIDTGGISGEE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEI----SFPKNIDFIFIGTKSD 330
           + ++     ++ L ++ AD++L + +    +N   E+        N     +  K D
Sbjct: 65  EGIDSAMAGQSLLAIQEADIVLFIVDSRVGLNPADELIARHLRVHNKKTYVVANKID 121


>gi|198274289|ref|ZP_03206821.1| hypothetical protein BACPLE_00431 [Bacteroides plebeius DSM 17135]
 gi|198272779|gb|EDY97048.1| hypothetical protein BACPLE_00431 [Bacteroides plebeius DSM 17135]
          Length = 441

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 6   GNLVAIVGRPNVGKSTLFNRLTKSRQAIVNEQAGTTRDRQYGKSEWLGKEFSVVDTGGWV 65

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +DD+ E+E  K+  L ++ AD+IL + ++ +          EI        + +  K+
Sbjct: 66  VNSDDVFEEEIRKQVMLAIDEADVILFVVDVMNGVTDLDMEVAEILRRSKTPVLLVANKT 125

Query: 330 ---DLYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
              DL     E Y       + +S+ +G G  +L++ + S    +  ++
Sbjct: 126 DNNDLQYNAAEFYSLGLGDPYCVSALSGSGTGDLLDLVLSKFKKETPEI 174



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 33/205 (16%)

Query: 201 NDISSHISQGKLG--EIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           + +   +S+ K    EI+ +   +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 158 DLLDLVLSKFKKETPEILDDDIPRFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDS 217

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR+ + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 218 IYTRYNKFGFDFYLVDTAGIRKKNKVSEDLEYYSVIRSIRSIENSDVCILMLDATRGIEG 277

Query: 314 -------ISFPKNIDFIFIGTKSDLYST-------------------YTEEYDHLISSFT 347
                  +        + +  K DL                      +T+      S+ T
Sbjct: 278 QDLNIFSLVQRNQKGLVVVVNKWDLIEDKTVKVMKGYEDAIRNRLAPFTDFPIVFTSALT 337

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + +++   K +   +  ++P +
Sbjct: 338 KQRILKVLELAKEVYQARTTRIPTA 362


>gi|119471071|ref|ZP_01613630.1| GTP-binding protein EngA [Alteromonadales bacterium TW-7]
 gi|119445911|gb|EAW27192.1| GTP-binding protein EngA [Alteromonadales bacterium TW-7]
          Length = 488

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  IV D+PGTTRD + I +        + DTAG+R+
Sbjct: 202 VKLAIIGRPNVGKSTLTNRILGEERVIVYDMPGTTRDSIYIPMTRNEKEYVLIDTAGVRK 261

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                D+VEK  + +T   +E+ +++LL+ +     S +++S            +    K
Sbjct: 262 RKKVSDVVEKFSVIKTLQAIEDCNVVLLVVDARDGISDQDLSLLGFALNSGRSLVIAVNK 321

Query: 329 SDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D    Y ++                  H IS+  G G+  L   +     +  K++  +
Sbjct: 322 WDGLDDYVKDRIKTELDRRLGFIDFARLHFISALHGTGVGHLFESVDEAYESATKRISTA 381

Query: 373 IPSH 376
           +   
Sbjct: 382 MLRR 385



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD      + +GY   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + +E E   ++ L +E AD++L L +       + + I+     ++     +  K+D   
Sbjct: 65  EGIEIEMADQSLLAIEEADIVLFLVDARVGMTVADQAIANHLRKQDKKCFVVANKTDGID 124

Query: 334 T---------YTEEYDHLISSFTGEGLEELINK 357
                      +    H I++  G G+  L+  
Sbjct: 125 ADSNCAEFYQLSLGEIHHIAAAHGRGITLLLEH 157


>gi|224476594|ref|YP_002634200.1| GTP-binding protein EngA [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254783167|sp|B9DNV9|DER_STACT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|222421201|emb|CAL28015.1| putative GTP-binding protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 436

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++++++    +  +   +  K+ ++G  N GKSSL NA+  +D  IV++I GTTRD 
Sbjct: 154 DLLDEVANNFKDEEDDDYDEDTIKLSLIGRPNVGKSSLVNAILGEDRVIVSNIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   E     + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 IDTEYSYEDQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVLDAEEGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEEGKAVVIVVNKWDTLDK 301



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 21/158 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   + DT GI  TD
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNVIDTGGIELTD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDL 331
              + +   +  + ++ AD+I+ +  +N ++ ++          +  N   +    K D 
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFM--VNQREGLTQTDEMIAQMLYKTNKPVVLAVNKVDN 123

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKS 360
               T+ YD           IS   G GL +L++++ +
Sbjct: 124 PEMRTDIYDFYALGFGEPFPISGSHGLGLGDLLDEVAN 161


>gi|110639446|ref|YP_679655.1| GTP-binding protein EngA [Cytophaga hutchinsonii ATCC 33406]
 gi|123354325|sp|Q11QK1|DER_CYTH3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|110282127|gb|ABG60313.1| GTP-binding protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 435

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++ SH       +  +   +I +LG  NAGKSS  NAL   + +IVTD  GTTRD 
Sbjct: 154 ELLDEVISHFKDEGEEDPNKGIPRIAVLGRPNAGKSSYVNALLGTNRSIVTDQAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +T   ++ G      DTAGIR+   I    E   I R+   +E +D+ +++ +     E 
Sbjct: 214 ITSHYNVFGKEFIFVDTAGIRKKSRIKEDVEYYSILRSVKALEESDVCVIMIDAERGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYST 334
                  ++       + +  K DL   
Sbjct: 274 QDMNIIWMAHNNKKGIVILVNKWDLIEK 301



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 18/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L    +AI+ D  G TRD    + +  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRLVGARIAIMDDESGVTRDRHYGEAEWCGKFFTVIDTGGYVTGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKSDLY 332
           DDI E +   +  + ++ AD+IL L + +      +  F   I       I +  KSD  
Sbjct: 65  DDIFEGQIRDQVDIAIDEADVILFLVDSDVGVHHLDQEFANKIRRSKKPVILVANKSDNN 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370
                  +           ISS  G G  EL++++ S   ++ ++ P
Sbjct: 125 KRLHMSAEFYELGMGEVWPISSQNGTGTGELLDEVISHFKDEGEEDP 171


>gi|253689379|ref|YP_003018569.1| small GTP-binding protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259645883|sp|C6DBH0|DER_PECCP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|251755957|gb|ACT14033.1| small GTP-binding protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 495

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 208 IKLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMVRDEREYVLIDTAGVRK 267

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 268 RGKVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 327

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S    E                  H IS+  G G+  L   +    +   +++  +
Sbjct: 328 WDGLSQEVREQVKETLDLRLGFIDFARIHFISALHGSGVGNLFESVTEAYACATRRVSTA 387

Query: 373 IPSH 376
           + + 
Sbjct: 388 MLTR 391



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 23/204 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTK----- 328
           D VE     ++ + +E AD++L + +       + + I+     +    + +  K     
Sbjct: 65  DGVETRMAGQSLVAIEEADIVLFMVDARAGLMPADEGIAKHLRSREKTTVLVANKTDGLD 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                +D YS    E  + I++  G G+  L+  +         + P  +   + +  + 
Sbjct: 125 PDMVTADFYSLGMGEV-YPIAASHGRGVTSLLETVLLPFVQDEIEEPVELSEEEENAAY- 182

Query: 384 SQTVRYLEMASLNEKD---CGLDI 404
              +   E AS  E +      D+
Sbjct: 183 WAALEADEQASEEEAEDDFNPEDL 206


>gi|116075028|ref|ZP_01472288.1| GTP-binding protein EngA [Synechococcus sp. RS9916]
 gi|116067225|gb|EAU72979.1| GTP-binding protein EngA [Synechococcus sp. RS9916]
          Length = 455

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + + +             ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD 
Sbjct: 156 DLLDQVLTFLPPKDEEGEGDEPIQMAIVGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDT 215

Query: 258 LTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI---NSK 311
           +  +++ +G   K+ DTAGI   R  +   E  GI R+F  +E +D+ +L+ +     ++
Sbjct: 216 IDTNIERQGMPWKLVDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTE 275

Query: 312 KEISFP-----KNIDFIFIGTKSDLYST 334
           ++         +    + +  K D    
Sbjct: 276 QDQRLAGRIEDEGRACVVVVNKWDAVEK 303



 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 19/175 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           D     E  ++  L +  A + L++ +          S  E    +N   +    K +  
Sbjct: 66  DSEFLPEIREQANLAMAEACVALVIVDGQQGMTAADESIAEWLRSQNCPTLLAVNKCESP 125

Query: 333 ST----------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                             H IS+  G G  +L++++ + L  K ++     P   
Sbjct: 126 DQGLAMAAEFWSLGLGEPHPISAIHGAGTGDLLDQVLTFLPPKDEEGEGDEPIQM 180


>gi|262402852|ref|ZP_06079413.1| GTP-binding protein EngA [Vibrio sp. RC586]
 gi|262351634|gb|EEZ00767.1| GTP-binding protein EngA [Vibrio sp. RC586]
          Length = 494

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R 
Sbjct: 206 IKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRR 265

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              I    EK  + +T   +E+A+++LL+ +     S +++S            +    K
Sbjct: 266 RKRINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNK 325

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E+                 H IS+  G G+  L   ++    +   ++  S
Sbjct: 326 WDGLSIDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYRSATTRVGTS 385

Query: 373 IPSH 376
           + + 
Sbjct: 386 VLTR 389



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVVDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +   ++               I +  K D   
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINK 357
                 +            ++  G G+  LI++
Sbjct: 125 ADAASAEFWQLGMDQMYQIAAAHGRGVGALIDR 157


>gi|189462216|ref|ZP_03011001.1| hypothetical protein BACCOP_02899 [Bacteroides coprocola DSM 17136]
 gi|189431069|gb|EDV00054.1| hypothetical protein BACCOP_02899 [Bacteroides coprocola DSM 17136]
          Length = 437

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWLGKEFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             ++DI E+E  K+  L ++ AD++L + ++ +           I        I +  K+
Sbjct: 62  VNSEDIFEEEIRKQVVLAIDEADVVLFVVDVTNGVTDLDMQVASILRRAKTPVIVVANKT 121

Query: 330 ---DLYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
              DL     E Y       + IS+ +G G  +L++ I S    +  ++
Sbjct: 122 DNNDLQYNAAEFYSLGLGDPYCISALSGSGTGDLLDLIVSKFKKESDEI 170



 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I S   +     +  +  +  ++G  NAGKSS+ NA   ++  IVT+I GTTRD 
Sbjct: 154 DLLDLIVSKFKKESDEILDEDIPRFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    D  G+   + DTAGIR+ + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYDKFGFDFYLVDTAGIRKKNKVSEDLEYYSVVRSIRSIENSDVCILMLDATRGIEG 273

Query: 314 -------ISFPKNIDFIFIGTKSDL-------------------YSTYTEEYDHLISSFT 347
                  +        + +  K DL                   ++ +T+      S+ T
Sbjct: 274 QDLNIFSLIQRNQKGLVVVVNKWDLVEEKTAKVMKNYEEAIRNRFAPFTDFPIIFASALT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + +++   K +   +  ++P +
Sbjct: 334 KQRIFKVLEAAKEVYQARTTRIPTA 358


>gi|325681451|ref|ZP_08160977.1| ribosome biogenesis GTPase Der [Ruminococcus albus 8]
 gi|324106941|gb|EGC01231.1| ribosome biogenesis GTPase Der [Ruminococcus albus 8]
          Length = 443

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++  ++ +    E      K+ ++G  N GKSSL N +  ++  IV+DI GTTRD 
Sbjct: 156 DMLDEVLKYLPEISAEEDDDEAVKVAVIGKPNVGKSSLINRICGEERVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI------ 308
              D++ E       DTAGIR      + VEK  + R ++ V+ AD+ +++ +       
Sbjct: 216 TDTDIENEFGKFVFIDTAGIRRKSKVLETVEKYSVLRAYMAVDRADVAVIVIDATVGFTE 275

Query: 309 --NSKKEISFPKNIDFIFIGTKSDLYST 334
             +     +  K    +    K D    
Sbjct: 276 QDSKVAGYAHEKGKACVVAVNKWDALEK 303



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + ++IV D PG TRD +    +  G    + DT GI  E+
Sbjct: 6   VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYGKCEWLGREFMLVDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI+  +  +++ L + +A++I+L+ +I S          ++        +    K D  
Sbjct: 66  DDIILSQMRRQSELAITSANVIILVTDIKSGVTSTDMEVAQMLMKSGKPVVLCVNKVDNV 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                E              +SS  G G  ++++++   L     +    
Sbjct: 126 GEPPMELYEFYNLGLGEPFPVSSVHGHGTGDMLDEVLKYLPEISAEEDDD 175


>gi|51892817|ref|YP_075508.1| GTP-binding protein [Symbiobacterium thermophilum IAM 14863]
 gi|81826113|sp|Q67NS9|DER_SYMTH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|51856506|dbj|BAD40664.1| GTP-binding protein [Symbiobacterium thermophilum IAM 14863]
          Length = 471

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 30/204 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + + + +      E    G  ++ ++G  N GKSSL NA+  ++  IV+D+PGTTRD
Sbjct: 155 DLLDAVVAALPDLSEPEPEEGGPVRVAVIGRPNVGKSSLVNAILGEERVIVSDVPGTTRD 214

Query: 257 VLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            + + ++       + DTAG+R     ++ VE+  + R    VE A ++L++ +      
Sbjct: 215 AIDVLVERGEDKFLLIDTAGMRRKARVEEAVERYSVMRALRAVERAQVVLIVIDAQDGVT 274

Query: 312 ------KEISFPKNIDFIFIGTKSDLY-------STYTEEY-----------DHLISSFT 347
                    +       I +  K DL        +  TEE             H +S+ T
Sbjct: 275 EQDQRIAGYAHENGKACIVVVNKWDLIEKDDRTMAKMTEEVRMRLAFMDYAMIHFVSAKT 334

Query: 348 GEGLEELINKIKSILSNKFKKLPF 371
              +  L+  IK   +N  +++  
Sbjct: 335 RARVHRLLPLIKEAAANHARRIST 358



 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS+LFN L +   AIV D PG TRD L  D +  G  + + DT GI+  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSRHAIVEDQPGVTRDRLYADTEWNGRTLTLVDTGGIQLDK 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL 331
             D +E    ++  L +  AD+I+ + ++            ++   +    I    K + 
Sbjct: 65  EGDTIEAHVTRQAELAIREADVIIFVVDVTDGVTAPDLEVADLLRRQRKPVIVAVNKVEN 124

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                E  +           +S+  G G  +L++ + + L +  +  P 
Sbjct: 125 LKREDEALEFWALGLEPLINVSAEHGLGTGDLLDAVVAALPDLSEPEPE 173


>gi|28378534|ref|NP_785426.1| GTP-binding protein EngA [Lactobacillus plantarum WCFS1]
 gi|254556748|ref|YP_003063165.1| GTP-binding protein EngA [Lactobacillus plantarum JDM1]
 gi|300767479|ref|ZP_07077391.1| ribosome-associated GTPase EngA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308180691|ref|YP_003924819.1| GTP-binding protein EngA [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|37999659|sp|Q88VZ6|DER_LACPL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|28271370|emb|CAD64275.1| GTP-binding protein [Lactobacillus plantarum WCFS1]
 gi|254045675|gb|ACT62468.1| GTP-binding protein EngA [Lactobacillus plantarum JDM1]
 gi|300495298|gb|EFK30454.1| ribosome-associated GTPase EngA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308046182|gb|ADN98725.1| GTP-binding protein EngA [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 436

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 36/216 (16%)

Query: 194 NDILFLKNDISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
              L L + + + I     K GE      +  ++G  N GKSS+ NAL  +D  IV+D+ 
Sbjct: 147 AHGLGLGDLLDAVIKNFPEKSGEDEPGTIRFSLIGRPNVGKSSIVNALLGEDRVIVSDVA 206

Query: 252 GTTRDVLTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE 307
           GTTRD +     D +G    + DTAGIR+   +    E+  + R    ++N+D+ L +  
Sbjct: 207 GTTRDAIDTKFTDQDGDRFVMVDTAGIRKKGKVYENTERYSVMRALKAIDNSDVALFV-- 264

Query: 308 INSKKEI----------SFPKNIDFIFIGTKSDLYST------------------YTEEY 339
           IN ++ I          +       I +  K DL                      +   
Sbjct: 265 INGEEGIREQDKRVAGYAHEAGKGIIIVVNKWDLVKKDNHTMQEFEAYIRDQFVYLSYAP 324

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
              +S+ T + LE+L   IK + +N  +++  S+ +
Sbjct: 325 IIFVSAKTNQRLEQLPALIKKVNTNHMRRIQSSVLN 360



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 18/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A   ++IV D PG TRD +  + +  G    + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYANSEWLGQEFSLIDTGGIDIED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
               K+  ++  + ++ AD+I+ L  I            +I +  N   +    K D   
Sbjct: 66  APFIKQITQQAEIAIDEADVIIYLVSIKEGVTDADEHVAQILYRSNKPVVLGVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINK-IKSILSNKFKKLPFSI 373
             +E YD           IS   G GL +L++  IK+      +  P +I
Sbjct: 126 LRSEVYDFYSLGFGDPYPISGAHGLGLGDLLDAVIKNFPEKSGEDEPGTI 175


>gi|296387686|ref|ZP_06877161.1| GTP-binding protein EngA [Pseudomonas aeruginosa PAb1]
          Length = 493

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  IV D  GTTRD + I  +       + DTAG
Sbjct: 195 KDGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERNEEKYTLIDTAG 254

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R    I    EK  + +T   +++A++++ + +                       +  
Sbjct: 255 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLLGFVLETGRALVIA 314

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D       +Y                 H IS+  G G+  L   ++    +   + 
Sbjct: 315 LNKWDGMEAAERDYVKTELERRLLFVDFADIHFISALHGTGVGHLYKSVQESFRSAVTRW 374

Query: 370 PFS 372
           P S
Sbjct: 375 PTS 377



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 17/162 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   AIV +  G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + ++ +  +++   +E AD +L L +  +          E    +N     +  K D   
Sbjct: 65  EGIDAKMAEQSLQAIEEADAVLFLVDSRAGMTAADQMIAEHLRKRNKRSFLVANKVDTID 124

Query: 334 TYTEEYDH---------LISSFTGEGLEELINKIKSILSNKF 366
                 +           I++  G G+  ++ +   I     
Sbjct: 125 PDLARAEFSPLGLGDALPIAAAHGRGINHMLQEALGIFPKDN 166


>gi|227498500|ref|ZP_03928646.1| small GTP-binding protein [Acidaminococcus sp. D21]
 gi|226903958|gb|EEH89876.1| small GTP-binding protein [Acidaminococcus sp. D21]
          Length = 403

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 29/186 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKSS+FN +  +  +IV+D+ GTTRD + + +  +G      DTAG+R 
Sbjct: 179 IKVAIIGRPNVGKSSIFNDIIGQTRSIVSDVAGTTRDAIDVPVMKDGQTYLFIDTAGMRR 238

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEI---SFPKNIDFIFIGTK 328
               D+ +EK  I RT   V+ +D++L++ +         K+I   +       + +  K
Sbjct: 239 KGKIDEPIEKYSIIRTLRAVDRSDVVLMVLDAVDGVTEQDKKIAGYAHEAGKGIVLVVNK 298

Query: 329 SDLY-----------STYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLP 370
            DLY            T  +E   +        S+ T + +  L + IK        ++ 
Sbjct: 299 WDLYQKDEMSTVHYTETIRKELIFMPYANVVYVSALTQQRISRLPDLIKDAAEANAMRIS 358

Query: 371 FSIPSH 376
            S+ + 
Sbjct: 359 TSVLNQ 364



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN  A   ++IV D PG TRD L  + +       + DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLFNIFADSRISIVEDTPGVTRDRLYAEAEWLDRRFMMVDTGGIEIAN 65

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D +     ++  + ++ AD+IL + +  +          ++        +    K+D  
Sbjct: 66  TDSIAVSIREQAKIAIKEADVILFVCDARTGVTTEDQEVAKLIRMAQKPVVLAVNKADTP 125

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILS 363
           +   E Y+         ++IS+     L +L++ + S   
Sbjct: 126 TQELEAYEFYNLGIGEPYMISASNRLNLGDLLDAVVSHFP 165


>gi|261212137|ref|ZP_05926423.1| GTP-binding protein EngA [Vibrio sp. RC341]
 gi|260838745|gb|EEX65396.1| GTP-binding protein EngA [Vibrio sp. RC341]
          Length = 494

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R 
Sbjct: 206 IKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRR 265

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              I    EK  + +T   +E+A+++LL+ +     S +++S            +    K
Sbjct: 266 RKRINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNK 325

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E+                 H IS+  G G+  L   ++    +   ++  S
Sbjct: 326 WDGLSIDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYRSATTRVGTS 385

Query: 373 IPSH 376
           + + 
Sbjct: 386 VLTR 389



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +   ++               I +  K D   
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINK 357
                 +            ++  G G+  LI++
Sbjct: 125 ADAASAEFWQLGMDQMYQIATAHGRGVGALIDR 157


>gi|160931619|ref|ZP_02079014.1| hypothetical protein CLOLEP_00451 [Clostridium leptum DSM 753]
 gi|156869490|gb|EDO62862.1| hypothetical protein CLOLEP_00451 [Clostridium leptum DSM 753]
          Length = 440

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 29/185 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKSSL N +A +D  IV+DI GTTRD +   ++ +     + DTAGIR 
Sbjct: 178 IRVAVIGKPNAGKSSLINQIAGEDRCIVSDIAGTTRDAIDTQIENDYGRFTLIDTAGIRR 237

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
               DD +EK  + R  + ++ +D+ +++ +              ++       +    K
Sbjct: 238 KSRVDDEIEKYSVIRAQMAIDRSDVCVIMIDATEGFTEQDSKVAGLAHEAGKGCVIAVNK 297

Query: 329 SDLYST---------YTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLP 370
            D                E D           IS+ TG+ L++L   I+ + +    ++ 
Sbjct: 298 WDAVEKDGRTMQEYRKKLEVDFSFMAYAPMVFISAKTGQRLDQLFELIQRVANFNAMRIT 357

Query: 371 FSIPS 375
             + +
Sbjct: 358 TGMLN 362



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 19/156 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+LFN L  + VAIV D PG TRD +  + +     V + DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLFNKLIGQRVAIVNDTPGVTRDRIYGECEWRSRKVTLVDTGGIEPYS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           DD++  +  ++  L ++ AD+I+L+ ++        +    +        +    K D  
Sbjct: 66  DDVILSQMRRQAELAIDTADVIVLVTDVKTGVVATDSEVAAMLLKSGRPVVLCVNKCDGI 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKI 358
                E+             +SS  G G  +L++ +
Sbjct: 126 GEPPAEFYEFYNLGLGDPIQVSSVHGHGTGDLLDAV 161


>gi|15640782|ref|NP_230412.1| GTP-binding protein EngA [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121585667|ref|ZP_01675462.1| GTP-binding protein [Vibrio cholerae 2740-80]
 gi|121726039|ref|ZP_01679338.1| GTP-binding protein [Vibrio cholerae V52]
 gi|147675115|ref|YP_001216248.1| GTP-binding protein EngA [Vibrio cholerae O395]
 gi|153817276|ref|ZP_01969943.1| GTP-binding protein [Vibrio cholerae NCTC 8457]
 gi|153821375|ref|ZP_01974042.1| GTP-binding protein [Vibrio cholerae B33]
 gi|227080942|ref|YP_002809493.1| GTP-binding protein [Vibrio cholerae M66-2]
 gi|229505623|ref|ZP_04395133.1| GTP-binding protein EngA [Vibrio cholerae BX 330286]
 gi|229510705|ref|ZP_04400184.1| GTP-binding protein EngA [Vibrio cholerae B33]
 gi|229517827|ref|ZP_04407271.1| GTP-binding protein EngA [Vibrio cholerae RC9]
 gi|229608641|ref|YP_002879289.1| GTP-binding protein EngA [Vibrio cholerae MJ-1236]
 gi|254847900|ref|ZP_05237250.1| GTP-binding protein EngA [Vibrio cholerae MO10]
 gi|255744569|ref|ZP_05418520.1| GTP-binding protein EngA [Vibrio cholera CIRS 101]
 gi|262161296|ref|ZP_06030407.1| GTP-binding protein EngA [Vibrio cholerae INDRE 91/1]
 gi|262168789|ref|ZP_06036484.1| GTP-binding protein EngA [Vibrio cholerae RC27]
 gi|298499104|ref|ZP_07008911.1| ribosome-associated GTPase EngA [Vibrio cholerae MAK 757]
 gi|26006742|sp|Q9KTW7|DER_VIBCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|172047436|sp|A5F3E6|DER_VIBC3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783177|sp|C3LT16|DER_VIBCM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|9655209|gb|AAF93928.1| GTP-binding protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121550030|gb|EAX60046.1| GTP-binding protein [Vibrio cholerae 2740-80]
 gi|121631521|gb|EAX63891.1| GTP-binding protein [Vibrio cholerae V52]
 gi|126512192|gb|EAZ74786.1| GTP-binding protein [Vibrio cholerae NCTC 8457]
 gi|126521085|gb|EAZ78308.1| GTP-binding protein [Vibrio cholerae B33]
 gi|146316998|gb|ABQ21537.1| GTP-binding protein [Vibrio cholerae O395]
 gi|227008830|gb|ACP05042.1| GTP-binding protein [Vibrio cholerae M66-2]
 gi|227012587|gb|ACP08797.1| GTP-binding protein [Vibrio cholerae O395]
 gi|229344542|gb|EEO09516.1| GTP-binding protein EngA [Vibrio cholerae RC9]
 gi|229350670|gb|EEO15611.1| GTP-binding protein EngA [Vibrio cholerae B33]
 gi|229357846|gb|EEO22763.1| GTP-binding protein EngA [Vibrio cholerae BX 330286]
 gi|229371296|gb|ACQ61719.1| GTP-binding protein EngA [Vibrio cholerae MJ-1236]
 gi|254843605|gb|EET22019.1| GTP-binding protein EngA [Vibrio cholerae MO10]
 gi|255737600|gb|EET92994.1| GTP-binding protein EngA [Vibrio cholera CIRS 101]
 gi|262022907|gb|EEY41613.1| GTP-binding protein EngA [Vibrio cholerae RC27]
 gi|262029046|gb|EEY47699.1| GTP-binding protein EngA [Vibrio cholerae INDRE 91/1]
 gi|297543437|gb|EFH79487.1| ribosome-associated GTPase EngA [Vibrio cholerae MAK 757]
          Length = 494

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R 
Sbjct: 206 IKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRR 265

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              I    EK  + +T   +E+A+++LL+ +     S +++S            +    K
Sbjct: 266 RKRINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNK 325

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E+                 H IS+  G G+  L   ++    +   ++  S
Sbjct: 326 WDGLSFDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYRSATTRVGTS 385

Query: 373 IPSH 376
           + + 
Sbjct: 386 VLTR 389



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 70/165 (42%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +   ++               I +  K D   
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKL 369
                 +            ++  G G+  LI+++ +  + + +  
Sbjct: 125 ADAASAEFWQLGMDQMYQIAAAHGRGVGALIDRVLNPFAEQMESE 169


>gi|212715828|ref|ZP_03323956.1| hypothetical protein BIFCAT_00729 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661195|gb|EEB21770.1| hypothetical protein BIFCAT_00729 [Bifidobacterium catenulatum DSM
           16992]
          Length = 709

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 84/415 (20%), Positives = 146/415 (35%), Gaps = 80/415 (19%)

Query: 49  SLRYFFGLDGRILDKGLLI-----VF-----------PSPESFT-GEDSAEF-------- 83
            +     LD   +D+ L+       F             P+ +  GED +E         
Sbjct: 43  CMNKGIDLDAETVDEQLVTETVGEFFTEGHFDISVDPDDPKVYADGEDISEVIRSSEVSS 102

Query: 84  --HVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA-FENGKIDLLEAES----LADLIS 136
                  I  V  +L    +    R A    FS  A       D+    +    +  L++
Sbjct: 103 HVSKVSNIIPVRHVLIAAQRAYIAREAASDSFSEGAGVVAEGRDITTVVAPDAEVRVLLT 162

Query: 137 SETE-MQRRLSMEGMSG----------ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV- 184
           +  E  Q R + +  SG          +  S    +      + +   +DLDF E  DV 
Sbjct: 163 AREEVRQARRAGQSASGVGAENVAARDKADSKVTNFTSAAEGVLTVDNSDLDFGETLDVL 222

Query: 185 ----QNFSSKEVLNDILFLKNDISSHISQGKLGEII---------RNGYK----IVILGH 227
                +   ++         +D    + +G  G I          ++G K    + ++G 
Sbjct: 223 VRIVDDAIEEQQYRQYASNLDDYE--LDEGDEGLIDGSSFVGGERQSGPKPVGVLAVVGR 280

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     + +E  
Sbjct: 281 PNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIESA 340

Query: 288 GIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST--YTE 337
              +  + V+ AD ++L+ +      N+ + I                K D   +   T 
Sbjct: 341 IASQAQIAVQLADAVVLVVDGQVGLTNTDERIVKMLRSSGKPVTLAVNKVDDRESEYLTA 400

Query: 338 EY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           E+        + IS+  G G+ EL++     L    K   F  PSH R +  + +
Sbjct: 401 EFWKMGLGEPYGISAMHGRGIGELLDAALESLKKAEKTSGFLTPSHLRRVALVGR 455



 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 107/298 (35%), Gaps = 53/298 (17%)

Query: 126 LEAESLADLISSETEMQRRLS---------MEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
            + E +   I+S+ ++  +L+           G++     +            +     +
Sbjct: 332 ADVEGIESAIASQAQIAVQLADAVVLVVDGQVGLTNTDERIVKMLRSS-GKPVTLAVNKV 390

Query: 177 DFSEEEDVQNFSSKEVLNDI--------LFLKNDISSHISQGKLGEIIRNGY-------K 221
           D  E E +     K  L +           +   + + +   K  E   +G+       +
Sbjct: 391 DDRESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALESLKKAEKT-SGFLTPSHLRR 449

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + ++G  N GKSSL N LA ++  +V D+ GTTRD +   + ++G      DTAGI+   
Sbjct: 450 VALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGIKRRL 509

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
                 E     RT   +E ++L L+L + +        K            + +  K D
Sbjct: 510 HKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRCIVLVFNKWD 569

Query: 331 LYSTYTE---------EYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L   +           E+D         +S+ TG     L   ++  L +  K++P  
Sbjct: 570 LMDDFDRQRMERLWKTEFDRVTWAQRVNLSAKTGWHTNRLARAMRGALESWDKRIPTG 627


>gi|297581162|ref|ZP_06943086.1| GTP-binding protein [Vibrio cholerae RC385]
 gi|297534478|gb|EFH73315.1| GTP-binding protein [Vibrio cholerae RC385]
          Length = 494

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R 
Sbjct: 206 IKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRR 265

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              I    EK  + +T   +E+A+++LL+ +     S +++S            +    K
Sbjct: 266 RKRINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNK 325

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E+                 H IS+  G G+  L   ++    +   ++  S
Sbjct: 326 WDGLSLDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYRSATTRVGTS 385

Query: 373 IPSH 376
           + + 
Sbjct: 386 VLTR 389



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +   ++               I +  K D   
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINK 357
                 +            ++  G G+  LI++
Sbjct: 125 ADAASAEFWQLGMDQMYQIAAAHGRGVGALIDR 157


>gi|196229979|ref|ZP_03128843.1| small GTP-binding protein [Chthoniobacter flavus Ellin428]
 gi|196226305|gb|EDY20811.1| small GTP-binding protein [Chthoniobacter flavus Ellin428]
          Length = 462

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 12/192 (6%)

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS-HISQGKLGEIIRNGYKIVILGH 227
           R+   + L FSE   +    ++ +L  + +L+  + +    +   G    +  KI I+G 
Sbjct: 97  RAAEFSQLGFSESIAISAEHNRGILPLVAWLERMLPAPIFDEAGPGSDPASPIKIAIVGR 156

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIV 284
            N GKSSL NA+   D  +V+ I GTTRD + I  +  G    + DTAGIR   + D+ V
Sbjct: 157 PNVGKSSLTNAILNDDRTLVSPISGTTRDAIDIPYERHGQHYVLIDTAGIRPRGKVDNSV 216

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           E   + R+   +  AD+  L+ +              +   +N   I    K DL    T
Sbjct: 217 EVFSVMRSETSIRRADICCLVIDAEQGVTAQDKRIAGMIQEENKPCIVAFNKWDLIKDRT 276

Query: 337 EEYDHLISSFTG 348
           +  + L     G
Sbjct: 277 DSKEELKEVLDG 288



 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 18/132 (13%)

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR-TFLEVENADLILLLKEI 308
           +PG TRD +T    L  Y  +I DT GI    D    E ++    + + +AD++L + + 
Sbjct: 1   MPGVTRDRITSQCKLGNYPFEIIDTGGIGANVDASFTEQVRAEVEIALGSADVLLFVVDG 60

Query: 309 NS-----KKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLI---------SSFTGEGL 351
                   +E++          +    K D+        +            S+    G+
Sbjct: 61  QDGLTPLDQELARLMRRTAKPLLLAINKIDVDQHGPRAAEFSQLGFSESIAISAEHNRGI 120

Query: 352 EELINKIKSILS 363
             L+  ++ +L 
Sbjct: 121 LPLVAWLERMLP 132


>gi|153828302|ref|ZP_01980969.1| GTP-binding protein [Vibrio cholerae 623-39]
 gi|254285481|ref|ZP_04960445.1| GTP-binding protein [Vibrio cholerae AM-19226]
 gi|148876256|gb|EDL74391.1| GTP-binding protein [Vibrio cholerae 623-39]
 gi|150424343|gb|EDN16280.1| GTP-binding protein [Vibrio cholerae AM-19226]
          Length = 494

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R 
Sbjct: 206 IKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRR 265

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              I    EK  + +T   +E+A+++LL+ +     S +++S            +    K
Sbjct: 266 RKRINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNK 325

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E+                 H IS+  G G+  L   ++    +   ++  S
Sbjct: 326 WDGLSFDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYRSATTRVGTS 385

Query: 373 IPSH 376
           + + 
Sbjct: 386 VLTR 389



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +   ++               I +  K D   
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINK 357
                 +            ++  G G+  LI++
Sbjct: 125 ADAASAEFWQLGMDQMYQIAAAHGRGVGALIDR 157


>gi|262192496|ref|ZP_06050647.1| GTP-binding protein EngA [Vibrio cholerae CT 5369-93]
 gi|262031655|gb|EEY50242.1| GTP-binding protein EngA [Vibrio cholerae CT 5369-93]
          Length = 494

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R 
Sbjct: 206 IKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRR 265

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              I    EK  + +T   +E+A+++LL+ +     S +++S            +    K
Sbjct: 266 RKRINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNK 325

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E+                 H IS+  G G+  L   ++    +   ++  S
Sbjct: 326 WDGLSLDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYRSATTRVGTS 385

Query: 373 IPSH 376
           + + 
Sbjct: 386 VLTR 389



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +   ++               I +  K D   
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINK 357
                 +            ++  G G+  LI++
Sbjct: 125 ADAASAEFWQLGMDQMYQIAAAHGRGVGTLIDR 157


>gi|262341130|ref|YP_003283985.1| GTP-binding protein EngA [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272467|gb|ACY40375.1| GTP-binding protein EngA [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 443

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 19/166 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           Y + I+G  N GKS+ FN L  +  AIV    G TRD +  + +  G    + DT G   
Sbjct: 3   YTVSIVGRPNVGKSTFFNRLVGRRKAIVHITSGVTRDRIFGNSEWNGVKFSVVDTGGFSF 62

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTK 328
               +D++EKE   + F+ ++ AD+IL L +I     ++ +EI+          + +  K
Sbjct: 63  ATSENDVLEKEIKNQIFIAIKEADVILFLVDIKMGVLDTDREIAKILRKSQKITLLVVNK 122

Query: 329 SDLYSTYTE--------EYDHLISSFTGEGLEELINKIKSILSNKF 366
            D    Y++        E  + IS+  G G  EL++K+  I  +KF
Sbjct: 123 VDNGILYSDTDFFHLGFENCYYISAINGSGTGELLDKLVEIFKDKF 168



 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 81/213 (38%), Gaps = 35/213 (16%)

Query: 198 FLKNDISSHISQ---GKLGEIIRNGY--KIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
            L + +          K  +II   +  +  ++G  N GKS+L N+   K+  IVT I G
Sbjct: 155 ELLDKLVEIFKDKFVQKKEKIINKEFLPRFSVVGRPNVGKSTLINSFLDKNHHIVTHISG 214

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI- 308
           TTRD L +     GY   + DT G+R+   I    E     RT   +E  D+ LL+ +  
Sbjct: 215 TTRDSLDVFYKKWGYECILVDTPGVRKKSKIRENIEFYSSIRTVRTIEYTDVCLLMVDAV 274

Query: 309 -------NSKKEISFPKNIDFIFIGTKSDLY-------------------STYTEEYDHL 342
                   +   +    +   I +  K DL+                   S +       
Sbjct: 275 RGWEKQDTNIFRLVKTNHKGIIILVNKWDLFHNKNFSIQKHFEFLIRKKISPFENVPILF 334

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           IS+    G+  +I     IL ++  +L  +I +
Sbjct: 335 ISAKNKNGIHHIIPLADQILKSRKNRLKTNILN 367


>gi|329571714|gb|EGG53395.1| ribosome biogenesis GTPase Der [Enterococcus faecalis TX1467]
          Length = 436

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 109/287 (37%), Gaps = 50/287 (17%)

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+  + +A+ L   I   +     L++  +         +  + +    +          
Sbjct: 92  GREGITDADELVAKILYRSNKPVILAVNKVDNP------EMRNDIYEFYAL--------G 137

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D    S    L     L   +    +  +  E   +  K  ++G  N GKSSL NA+ 
Sbjct: 138 LGDPFPVSGSHGLGIGDVLDEAVKHFPNTSE--EEDEDTIKFSLIGRPNVGKSSLINAIL 195

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
            +D  IV+DI GTTRD +    +  EG    + DTAG+R+   +    EK  + R    +
Sbjct: 196 GEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRGKVYESTEKYSVMRAMRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTE--------- 337
           E +D++L++  +N+++ I          +       I +  K D     T          
Sbjct: 256 ERSDIVLMV--LNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWDTVKKDTNTMRDFEAEI 313

Query: 338 ---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                         +S+ T + L +L   I+++  N+  ++P ++ +
Sbjct: 314 RDEFQYLDYAPIIFVSALTKQRLNKLPELIETVSMNQNLRIPSALLN 360



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    I DT G    D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGFDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL-------KEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+I+ +        + +    +I +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + Y+           +S   G G+ +++++      N  ++      
Sbjct: 126 MRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHFPNTSEEEDEDTI 175


>gi|239631541|ref|ZP_04674572.1| GTP-binding protein EngA [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526006|gb|EEQ65007.1| GTP-binding protein EngA [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 435

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   LAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGTSEWLGKEFAVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+IL L +I S          +I +      +    K D   
Sbjct: 66  EPFLAQIKDQAEIAIDEADVILFLADIESGVTDADERVAQILYRAKKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD            S   G GL ++++ + +   ++ K +     
Sbjct: 126 RRQDIYDFYSLGFGEPYPLSGTHGIGLGDVLDAVLAAFPSEDKSVEDDSI 175



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 90/214 (42%), Gaps = 35/214 (16%)

Query: 195 DILFLKNDISSHISQ--GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
             + L + + + ++    +   +  +  K  ++G  N GKSSL NA+  ++  IV+ I G
Sbjct: 148 HGIGLGDVLDAVLAAFPSEDKSVEDDSIKFSLIGRPNVGKSSLVNAILGENRVIVSPIEG 207

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN 309
           TTRD +    +       + DTAGIR+   +    EK  + R    ++ +D++L +  IN
Sbjct: 208 TTRDAIDTKFEAVDETFTMIDTAGIRKRGKVYENTEKYAVMRALRAIDRSDVVLFV--IN 265

Query: 310 SKKEI----------SFPKNIDFIFIGTKSDLYST-----------YTEEY-------DH 341
           +++ I          S       I +  K D                 +E+         
Sbjct: 266 AEEGIREQDKKVAGYSHEAGRGIIIVVNKWDTVEKDNHTMKDFENLIRQEFQYLDYAPII 325

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            +S+ T + L+ L   I ++  N+ +++  S+ +
Sbjct: 326 FVSAKTKQRLQSLPAMIVAVSENQTRRIQSSVLN 359


>gi|253699395|ref|YP_003020584.1| GTP-binding protein EngA [Geobacter sp. M21]
 gi|259645878|sp|C6E0Y6|DER_GEOSM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|251774245|gb|ACT16826.1| small GTP-binding protein [Geobacter sp. M21]
          Length = 440

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 18/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L  +  A+V D+PG TRD    +++       + DT G   ET
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYAEVNRFDVPFILVDTGGFEPET 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPK--NIDFIFIGTKSDLY 332
            D + ++  +++   ++ ADLIL + +         +  +   +  N    +I  K D  
Sbjct: 65  SDRLLQQMREQSRFAMDEADLILFVMDARGGLTPADRDVVDMLRRINKPVFYIINKVDGE 124

Query: 333 STYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
               E         ++ H IS+    G+ +L++++ + +    +K      + 
Sbjct: 125 KQEAEAGDFYSLGVDHIHTISAEHNRGVGDLMDEVLAAIPYDREKESDEEITR 177



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 29/228 (12%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +S   D  +  S E    +  L +++ + I   +  E      +I ++G  N GKS+L N
Sbjct: 134 YSLGVDHIHTISAEHNRGVGDLMDEVLAAIPYDREKESDEEITRIAVVGRPNVGKSTLVN 193

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFL 294
            L   +  +     GTTRD +     +      + DTAGIR        VEK  +     
Sbjct: 194 RLLGYERVVANPTAGTTRDAVDTRFTVNKKPYLLIDTAGIRRKGKTVQKVEKYSVMDALR 253

Query: 295 EVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-------LYSTYTEEY 339
            +E AD++L++                 ++      IF+  K D         + +TEE 
Sbjct: 254 SIERADVVLIVLNAEEGVTEQDSKIAGYAYEAGRGCIFVVNKWDTLAKDNSSIAKFTEEI 313

Query: 340 -----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                         +S+ TG+   ++I ++  ++    K++     + 
Sbjct: 314 RRNFKYLPFAPILFVSAETGQRTGKIIAEVDQVMEQYCKRVTTGELNR 361


>gi|311110809|ref|ZP_07712206.1| ribosome-associated GTPase EngA [Lactobacillus gasseri MV-22]
 gi|311065963|gb|EFQ46303.1| ribosome-associated GTPase EngA [Lactobacillus gasseri MV-22]
          Length = 389

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 111/292 (38%), Gaps = 47/292 (16%)

Query: 131 LADLISSETEMQRRLS--------MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           + + I ++ E+    +        +      +     + + +            D  E+ 
Sbjct: 22  IEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLYRTKKPIILAVNKADNPEQR 81

Query: 183 DVQNFSSKEVLNDILFLK--------NDISSHISQG--KLGEIIRNGYKIVILGHSNAGK 232
                     L D + +         + + + + +   K  +   +  +  ++G  N GK
Sbjct: 82  TDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGDKANQHEDDSIRFSVIGRPNVGK 141

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGI 289
           SSL NA+  +   IV++I GTTRD +      +G    I DTAGIR    +    EK  +
Sbjct: 142 SSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKVYEKTEKYSV 201

Query: 290 KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT----- 336
            R    +E +D+ LL+ + ++            +       I +  K DL   Y+     
Sbjct: 202 LRAISAIEESDITLLVLDASTGIREQDKHVAGYAHDAGRGVIIVVNKWDLPKKYSTSMKD 261

Query: 337 ------EEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                 +E+ +        +S+ TG+ + +++  +K +  N+ +++  S+ +
Sbjct: 262 FEDTIRQEFQYLDYAPIVFVSAKTGQRVPDILKLVKEVHDNQTRRIKSSVLN 313



 Score = 56.0 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 17/127 (13%)

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISF 316
            G+   + DT GI      +E++   +  + ++ AD+I++L ++            ++ +
Sbjct: 3   GGHEFILIDTGGITLDSGEIEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLY 62

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFK 367
                 I    K+D     T+ YD           +S   G G+ +L++ I     +K  
Sbjct: 63  RTKKPIILAVNKADNPEQRTDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGDKAN 122

Query: 368 KLPFSIP 374
           +      
Sbjct: 123 QHEDDSI 129


>gi|15598994|ref|NP_252488.1| GTP-binding protein EngA [Pseudomonas aeruginosa PAO1]
 gi|107103319|ref|ZP_01367237.1| hypothetical protein PaerPA_01004388 [Pseudomonas aeruginosa PACS2]
 gi|152985588|ref|YP_001346699.1| GTP-binding protein EngA [Pseudomonas aeruginosa PA7]
 gi|254236703|ref|ZP_04930026.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254242490|ref|ZP_04935812.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|313109217|ref|ZP_07795185.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa 39016]
 gi|26006739|sp|Q9HXJ8|DER_PSEAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225840|sp|A6V0W4|DER_PSEA7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|9949972|gb|AAG07186.1|AE004798_9 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126168634|gb|EAZ54145.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126195868|gb|EAZ59931.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|150960746|gb|ABR82771.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
 gi|310881687|gb|EFQ40281.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa 39016]
          Length = 493

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  IV D  GTTRD + I  +       + DTAG
Sbjct: 195 KDGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERNEEKYTLIDTAG 254

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R    I    EK  + +T   +++A++++ + +                       +  
Sbjct: 255 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLLGFVLETGRALVIA 314

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D       +Y                 H IS+  G G+  L   ++    +   + 
Sbjct: 315 LNKWDGMEAAERDYVKTELERRLLFVDFADIHFISALHGTGVGHLYKSVQESFRSAVTRW 374

Query: 370 PFS 372
           P S
Sbjct: 375 PTS 377



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 17/162 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   AIV +  G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + ++ +  +++   +E AD +L L +  +          E    +N     I  K D   
Sbjct: 65  EGIDAKMAEQSLQAIEEADAVLFLVDSRAGMTAADQMIAEHLRKRNKRSFLIANKVDTID 124

Query: 334 TYTEEYDH---------LISSFTGEGLEELINKIKSILSNKF 366
                 +           I++  G G+  ++ +   I     
Sbjct: 125 PDLARAEFSPLGLGDALPIAAAHGRGINHMLQEALGIFPKDN 166


>gi|297623927|ref|YP_003705361.1| ribosome-associated GTPase EngA [Truepera radiovictrix DSM 17093]
 gi|297165107|gb|ADI14818.1| ribosome-associated GTPase EngA [Truepera radiovictrix DSM 17093]
          Length = 439

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 24/191 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  N GKSSL NAL   +  IV D+PGTTRD + +  D  G    + DTAGIR 
Sbjct: 175 VRVAIIGRPNVGKSSLLNALVGDERVIVADVPGTTRDSVDVRFDFGGRPFVLIDTAGIRR 234

Query: 280 TDDIV-EKEGIKRTFLEVENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSDL 331
             D   E     R+   +  +D+ +L+ +     +       ++       +    K DL
Sbjct: 235 KPDGDVEYYSKLRSEEALMRSDVAVLVVDPFELGDHELRLANLALQAGKPVVLTINKWDL 294

Query: 332 Y-STYTEEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                  E++                  S+    GL +L+  +  +      ++P S  +
Sbjct: 295 VPDEALREFEKNIAQVLGHLDFAPKVYTSALNAYGLHDLLAAVIRVYDTARFRVPTSEVN 354

Query: 376 HKRHLYHLSQT 386
               ++   Q 
Sbjct: 355 GWLEVWTQRQA 365



 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           K+ I+G  N GKSSLFN L  +  AIV D+PG TRDV    ++ + G    + DT G+  
Sbjct: 3   KVAIVGRPNVGKSSLFNRLVGRREAIVADMPGVTRDVKEARVEDDLGRSFTLLDTGGLWS 62

Query: 280 TDDIVEKEGIK-----------------RTFLEVENADLILLLKEINSKKEISFPKNIDF 322
            D+  E    +                 R  L   + ++   L+ +  K  +     +D 
Sbjct: 63  NDEWQEPIKRRIEAALADAALVLFCVDGRAPLSAADYEVAAWLRNVG-KPTLLLATKLDD 121

Query: 323 IFIGTKSDLYSTYTEEY--DHLISSFTGEGLEELINKIKSILS 363
                  + Y  Y   +     IS+    G  EL++ I   L 
Sbjct: 122 PRHEESPEFYELYGLGFGEPLAISAEHARGTYELLDTIFERLP 164


>gi|110004318|emb|CAK98656.1| putative gtp-binding protein enga [Spiroplasma citri]
          Length = 438

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 12/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + S++ Q  + +    G    ++G  N GKSSL NA+  ++  IV+ I GTT D 
Sbjct: 156 DLLDQVISYLDQIPI-QPKTEGIHFSLIGKPNVGKSSLTNAILGEERVIVSPIAGTTTDS 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +         L  + DTAGIR    +    EK  + R    ++ +DL+LL+ +       
Sbjct: 215 IDTSFKRNNQLYTVIDTAGIRRKGKVYEKLEKYSVLRAVSAIKRSDLVLLIIDGTVPITD 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE 337
                  I+F +N   I +  K D      E
Sbjct: 275 QDTNIAGITFEQNKPIILVVNKWDAVMEKDE 305



 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN + K  +AIV D PG TRD +    +       I DT GI    
Sbjct: 7   VAIVGRPNVGKSTLFNRIIKNRLAIVEDTPGVTRDRIYAFSEWLTREFLIIDTGGITLNN 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFIGTKSDLY 332
             +  +E   +  + +  AD+I+ +         +     +I +      + +  K D  
Sbjct: 67  TAMFAQEIKMQAEIAIAEADIIIFVLSYKEGITPDDEMVAKILYRSKKPVLLVINKYDKQ 126

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSN 364
              +E ++++          S+  G G+ +L++++ S L  
Sbjct: 127 EKESELFEYMTLGFGEPIAVSATHGIGIGDLLDQVISYLDQ 167


>gi|187935025|ref|YP_001885401.1| GTP-binding protein EngA [Clostridium botulinum B str. Eklund 17B]
 gi|238691598|sp|B2THQ9|DER_CLOBB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|187723178|gb|ACD24399.1| ribosome-associated GTPase EngA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 438

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +  H  +           +I ++G  N GKSSL N L  ++  IV+D+ GTTRD 
Sbjct: 155 DMLDRVVEHFDRFDADAEEDEYIRIAMIGKPNVGKSSLINKLLGEERLIVSDVAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +   L+ E     + DTAG+R      + +E+  + RT+  +E AD+ +L+ +       
Sbjct: 215 IDSYLETEQGKFILIDTAGLRRKSKVKEEIERYSVIRTYASIEKADVCILMIDAQDGVTE 274

Query: 315 SFPK--------NIDFIFIGTKSDLYSTYTEEYDH------------------LISSFTG 348
              K        N   I +  K DL     +  +                    IS+ TG
Sbjct: 275 QDEKIIGYAHELNKAIIVLVNKWDLVEKDDKTMEKFKKDLQGSLKFMPYAEYLFISALTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           +   +++   K   +N  K++   I +
Sbjct: 335 QRTHKILELAKKCYNNYNKRVSTGILN 361



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 15/189 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + I+G  N GKS+LFN LA K ++IV D PG TRD +  + +   Y   + DT GI  T 
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTGGIEPTN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLY 332
           DDI+ K+  ++  + +E AD+I+ + +       + +E++          + +  K D  
Sbjct: 66  DDIIMKQMRRQANIAIETADVIVFIVDGKEGLTAADQEVANMLRKSKKPVVLVVNKID-- 123

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
              + +Y+     F   G+ + I  I +  +     +   +  H       ++   Y+ +
Sbjct: 124 ---SLKYEENSWEFYNLGIGDPI-TISASQALGLGDMLDRVVEHFDRFDADAEEDEYIRI 179

Query: 393 ASLNEKDCG 401
           A + + + G
Sbjct: 180 AMIGKPNVG 188


>gi|169824551|ref|YP_001692162.1| GTP-binding protein [Finegoldia magna ATCC 29328]
 gi|238687753|sp|B0S1N2|DER_FINM2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|167831356|dbj|BAG08272.1| GTP-binding protein [Finegoldia magna ATCC 29328]
          Length = 438

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 11/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L   + S        E   +  K+ ++G  N GKSSL N L  ++  IVTDI GTTRD 
Sbjct: 155 DLLEAVVSKFDDNSNTESDDDITKVCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++ +G      DTAG+R+    D  VE+  + RT   ++ +D+ +L+ +       
Sbjct: 215 IDSKINYKGNEYIFIDTAGLRKRKKIDTEVERYSVVRTLSAIDRSDICVLMIDATEGVSE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE 337
                   +  +    I +  K DL    T 
Sbjct: 275 QDTKILGYAHDQGKAMIILVNKWDLVEKQTN 305



 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G +N GKS+LFN L KK +AI  D PG TRD L ++ + +     + DT G+  ++
Sbjct: 6   VAIVGRANVGKSTLFNKLIKKRIAITQDDPGVTRDRLYMEAEWQNKYFTVVDTGGLEPKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           ++I+ K   K+T L +E AD+IL + +             ++        I +  K D  
Sbjct: 66  NEIITKNIKKQTELAIETADVILFMVDGKQGITPIDMEVADMLRRTKKSVILVVNKIDHI 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 YD            S+    GL +L+  + S   +        
Sbjct: 126 KQQDNVYDFYNLGFYEIFPISASNSMGLGDLLEAVVSKFDDNSNTESDD 174


>gi|153216257|ref|ZP_01950357.1| GTP-binding protein [Vibrio cholerae 1587]
 gi|124114402|gb|EAY33222.1| GTP-binding protein [Vibrio cholerae 1587]
          Length = 494

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R 
Sbjct: 206 IKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRR 265

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              I    EK  + +T   +E+A+++LL+ +     S +++S            +    K
Sbjct: 266 RKRINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNK 325

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E+                 H IS+  G G+  L   ++    +   ++  S
Sbjct: 326 WDGLSLDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYRSATTRVGTS 385

Query: 373 IPSH 376
           + + 
Sbjct: 386 VLTR 389



 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +   ++               I +  K D   
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINK 357
                 +            ++  G G+  LI++
Sbjct: 125 ADAASAEFWQLGMDQMYQIAAAHGRGVGALIDR 157


>gi|153800614|ref|ZP_01955200.1| GTP-binding protein [Vibrio cholerae MZO-3]
 gi|153824529|ref|ZP_01977196.1| GTP-binding protein [Vibrio cholerae MZO-2]
 gi|229513098|ref|ZP_04402564.1| GTP-binding protein EngA [Vibrio cholerae TMA 21]
 gi|229523415|ref|ZP_04412822.1| GTP-binding protein EngA [Vibrio cholerae TM 11079-80]
 gi|229525408|ref|ZP_04414813.1| GTP-binding protein EngA [Vibrio cholerae bv. albensis VL426]
 gi|229530107|ref|ZP_04419497.1| GTP-binding protein EngA [Vibrio cholerae 12129(1)]
 gi|254225026|ref|ZP_04918640.1| GTP-binding protein [Vibrio cholerae V51]
 gi|124123903|gb|EAY42646.1| GTP-binding protein [Vibrio cholerae MZO-3]
 gi|125622413|gb|EAZ50733.1| GTP-binding protein [Vibrio cholerae V51]
 gi|149741747|gb|EDM55776.1| GTP-binding protein [Vibrio cholerae MZO-2]
 gi|229333881|gb|EEN99367.1| GTP-binding protein EngA [Vibrio cholerae 12129(1)]
 gi|229338989|gb|EEO04006.1| GTP-binding protein EngA [Vibrio cholerae bv. albensis VL426]
 gi|229339778|gb|EEO04793.1| GTP-binding protein EngA [Vibrio cholerae TM 11079-80]
 gi|229349991|gb|EEO14945.1| GTP-binding protein EngA [Vibrio cholerae TMA 21]
 gi|327483547|gb|AEA77954.1| GTP-binding protein EngA [Vibrio cholerae LMA3894-4]
          Length = 494

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R 
Sbjct: 206 IKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRR 265

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              I    EK  + +T   +E+A+++LL+ +     S +++S            +    K
Sbjct: 266 RKRINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNK 325

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S   +E+                 H IS+  G G+  L   ++    +   ++  S
Sbjct: 326 WDGLSLDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYRSATTRVGTS 385

Query: 373 IPSH 376
           + + 
Sbjct: 386 VLTR 389



 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +   ++               I +  K D   
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINK 357
                 +            ++  G G+  LI++
Sbjct: 125 ADAASAEFWQLGMDQMYQIAAAHGRGVGALIDR 157


>gi|191638373|ref|YP_001987539.1| GTP-binding protein EngA [Lactobacillus casei BL23]
 gi|301066427|ref|YP_003788450.1| putative GTPase [Lactobacillus casei str. Zhang]
 gi|238693036|sp|B3WE80|DER_LACCB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|190712675|emb|CAQ66681.1| GTP-binding protein engA [Lactobacillus casei BL23]
 gi|300438834|gb|ADK18600.1| Predicted GTPase [Lactobacillus casei str. Zhang]
 gi|327382401|gb|AEA53877.1| GTPase family protein [Lactobacillus casei LC2W]
 gi|327385602|gb|AEA57076.1| GTPase family protein [Lactobacillus casei BD-II]
          Length = 435

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   LAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGTSEWLGKEFAVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+IL L +I S          +I +      +    K D   
Sbjct: 66  EPFLAQIKDQAEIAIDEADVILFLADIESGVTDADERVAQILYRAKKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD            S   G GL ++++ + +   ++ K +     
Sbjct: 126 RRQDIYDFYSLGFGEPYPLSGTHGIGLGDVLDAVLAAFPSEDKSVEDDSI 175



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 90/214 (42%), Gaps = 35/214 (16%)

Query: 195 DILFLKNDISSHISQ--GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
             + L + + + ++    +   +  +  K  ++G  N GKSSL NA+  ++  IV+ I G
Sbjct: 148 HGIGLGDVLDAVLAAFPSEDKSVEDDSIKFSLIGRPNVGKSSLVNAILGENRVIVSPIEG 207

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN 309
           TTRD +    +       + DTAGIR+   +    EK  + R    ++ +D++L +  IN
Sbjct: 208 TTRDAIDTKFEAVDETFTMIDTAGIRKRGKVYENTEKYAVMRALRAIDRSDVVLFV--IN 265

Query: 310 SKKEI----------SFPKNIDFIFIGTKSDLYST-----------YTEEY-------DH 341
           +++ I          +       I +  K D                 +E+         
Sbjct: 266 AEEGIREQDKKVAGYAHEAGRGIIIVVNKWDTVEKDNHTMKDFENLIRQEFQYLDYAPII 325

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            +S+ T + L+ L   I ++  N+ +++  S+ +
Sbjct: 326 FVSAKTKQRLQSLPAMIVAVSENQTRRIQSSVLN 359


>gi|81428627|ref|YP_395627.1| GTP-binding protein EngA [Lactobacillus sakei subsp. sakei 23K]
 gi|123564226|sp|Q38WW3|DER_LACSS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78610269|emb|CAI55318.1| Putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K]
          Length = 436

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G+   + DT GI  +D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTASEWLGHEFSLIDTGGIEISD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
               ++  ++  + ++ AD+I+        + + + +  +I +      +    K+D   
Sbjct: 66  APFMEQIKQQAEIAIDEADVIIFLVSAREGVTDADERVAQILYRAEKPILLGVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + +D           +S   G+G+ +L++   +      ++      
Sbjct: 126 QRQDIFDFYSLGFGDPIPVSGAHGQGVGDLLDAAVAKFPTDLEEEDDDSI 175



 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 18/153 (11%)

Query: 194 NDILFLKNDISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
                + + + + +++    L E   +  K  ++G  N GKSSL NA+ K+D  IV+ I 
Sbjct: 147 AHGQGVGDLLDAAVAKFPTDLEEEDDDSIKFSLIGRPNVGKSSLVNAMLKEDRVIVSQIE 206

Query: 252 GTTRDVLTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE 307
           GTTRD +    +        + DTAGIR+   +    EK  + R    ++ +D++L++  
Sbjct: 207 GTTRDAIDTKFMAENNQEFTMIDTAGIRKRGKVYENTEKYAVMRALRAIDRSDVVLVV-- 264

Query: 308 INSKKEI----------SFPKNIDFIFIGTKSD 330
           +N+++ I          +       I +  K D
Sbjct: 265 LNAEEGIREQDKKVAGYAHEAGRGIIIVVNKWD 297


>gi|238785325|ref|ZP_04629314.1| GTP-binding protein engA [Yersinia bercovieri ATCC 43970]
 gi|238713778|gb|EEQ05801.1| GTP-binding protein engA [Yersinia bercovieri ATCC 43970]
          Length = 494

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 29/240 (12%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
           +L         D +  E E     ++           ++I            +    K+ 
Sbjct: 153 QLIEDVMAPYIDAEEPEVELTDEEANAAYWAAQEAGDDEIPEDEEDDFDPRTL--PIKLA 210

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-- 281
           I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+    
Sbjct: 211 IVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMTRDEREYVLIDTAGVRKRGKV 270

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLY 332
            + VEK  + +T   +E+++++LL+ +     S +++S            +    K D  
Sbjct: 271 TETVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWDGM 330

Query: 333 STYTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           +                       H IS+  G G+  L   I+       K++  S+ + 
Sbjct: 331 TEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCSTKRVGTSLLTR 390



 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           D VE +   ++ L +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN 356
             T   D         H I++  G G+ +LI 
Sbjct: 125 PDTATADFYSLGLGEVHAIAASHGRGVTQLIE 156


>gi|168182597|ref|ZP_02617261.1| ribosome-associated GTPase EngA [Clostridium botulinum Bf]
 gi|237795959|ref|YP_002863511.1| GTP-binding protein EngA [Clostridium botulinum Ba4 str. 657]
 gi|259645868|sp|C3L0M1|DER_CLOB6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|182674194|gb|EDT86155.1| ribosome-associated GTPase EngA [Clostridium botulinum Bf]
 gi|229263345|gb|ACQ54378.1| ribosome-associated GTPase EngA [Clostridium botulinum Ba4 str.
           657]
          Length = 439

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 97/258 (37%), Gaps = 29/258 (11%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  M  +        ++K+  ++    A   ++         S      +  + + +  H
Sbjct: 104 VAQMLRKSKKPVVLVVNKIDKLKDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEH 163

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
               +          I  +G  N GKSSL N L  ++  IV+DIPGTTRD +   ++ + 
Sbjct: 164 FKDDESDGEDDERINIAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVNTDF 223

Query: 267 YLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----- 318
               + DTAG+R      + +E+  + RT+  +E AD+ +L+ +          K     
Sbjct: 224 GEFTLIDTAGLRRKSKVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQKIIGYA 283

Query: 319 ---NIDFIFIGTKSDLYSTYTEEYDH------------------LISSFTGEGLEELINK 357
              N   + I  K DL     +  D                    IS+ TG+ + +++  
Sbjct: 284 HDINKAILVIVNKWDLVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQRVVKVLQT 343

Query: 358 IKSILSNKFKKLPFSIPS 375
            K    N  K++   + +
Sbjct: 344 AKECYDNYTKRVKTGVLN 361



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K ++IV D PG TRD +  + +   Y   + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           +DI+  +  ++  + +E A++I+ L +       + KE++          + +  K D  
Sbjct: 66  EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADKEVAQMLRKSKKPVVLVVNKIDKL 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
                 Y+            SS    GL ++++++    
Sbjct: 126 KDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEHF 164


>gi|331002253|ref|ZP_08325772.1| GTP-binding protein engA [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330411347|gb|EGG90763.1| GTP-binding protein engA [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 443

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 92/240 (38%), Gaps = 36/240 (15%)

Query: 198 FLKNDISSHISQ-GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + ++ H    G   E   +  +I I+G  N GKSS+ N L  ++  IV+DI GTTRD
Sbjct: 156 DLLDAVAVHFKSKGNESEEDDDRPRIAIVGKPNVGKSSIINRLTGQNRVIVSDIAGTTRD 215

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK-- 311
            +   +          DTAG+R    +   +E+  I RT   VE AD+++L+ + N    
Sbjct: 216 AIDTVVVNNKQEYVFIDTAGLRRKSKVKEDIERYSIIRTVTAVERADVVILVIDANEGVT 275

Query: 312 ------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                   I+  +    I    K DL                 + + E  + IK ILS  
Sbjct: 276 EQDAKIAGIAHDRGKGIIVAVNKWDLVEK------------DNKTIYEYTDNIKRILSFM 323

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425
                  I +       L +    +++   N+           LR+ +  L +I     V
Sbjct: 324 PYAEYIFISALSGQR--LQKLFEMIDIVRENQT----------LRIQTGVLNEIISEATV 371



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNA+A + ++IV D PG TRD +  D         + DT GI  ++
Sbjct: 6   VAIIGRPNVGKSTLFNAIAGEPISIVKDTPGVTRDRIYADCTWLDMNFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + +E AD+I+ + ++            ++        +    K D  
Sbjct: 66  SDIILSQMREQAEIAIETADVIVFITDVRQGLVDSDSKVCDMLRKSRKPVVLAVNKVDSI 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           + +  +              IS+ +  G+ +L++ +     +K  +    
Sbjct: 126 AKFGNDVYEFYNLGIGDPVAISAASRLGIGDLLDAVAVHFKSKGNESEED 175


>gi|307292007|ref|ZP_07571876.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0411]
 gi|306497005|gb|EFM66553.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0411]
          Length = 436

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 109/287 (37%), Gaps = 50/287 (17%)

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+  + +A+ L   I   +     L++  +         +  + +    +          
Sbjct: 92  GREGITDADELVAKILYRSNKPVILAVNKVDNP------EMRNDIYEFYAL--------G 137

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D    S    L     L   +    +  +  E   +  K  ++G  N GKSSL NA+ 
Sbjct: 138 LGDPFPVSGSHGLGIGDVLDEAVKHFPNTSE--EEDEDTIKFSLIGRPNVGKSSLINAIL 195

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
            +D  IV+DI GTTRD +    +  EG    + DTAG+R+   +    EK  + R    +
Sbjct: 196 GEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRGKVYESTEKYSVMRAMRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTE--------- 337
           E +D++L++  +N+++ I          +       I +  K D     T          
Sbjct: 256 ERSDIVLMV--LNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWDTVKKDTNTMRDFEAEI 313

Query: 338 ---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                         +S+ T + L +L   I+++  N+  ++P ++ +
Sbjct: 314 RDEFQYLDYAPIIFVSALTKQRLNKLPELIETVSMNQNLRIPSALLN 360



 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL-------KEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+I+ +        + +    +I +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + Y+           +S   G G+ +++++      N  ++      
Sbjct: 126 MRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHFPNTSEEEDEDTI 175


>gi|293394879|ref|ZP_06639169.1| ribosome-associated GTPase EngA [Serratia odorifera DSM 4582]
 gi|291422630|gb|EFE95869.1| ribosome-associated GTPase EngA [Serratia odorifera DSM 4582]
          Length = 497

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 96/239 (40%), Gaps = 29/239 (12%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKI 222
           +L              E E  +  ++     +     +D  +   + +     ++   K+
Sbjct: 153 QLIEHVLVPFLPEKEQEVELTEEQANAAYWAEQQGELSD-EALAEEPEDDFNPQDLPIKL 211

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD- 281
            I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+   
Sbjct: 212 AIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKRGK 271

Query: 282 --DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDL 331
             + VEK  + +T   +E+A+++LL+ +     S +++S            +    K D 
Sbjct: 272 VTETVEKFSVIKTLQAIEDANVVLLVVDAREGISDQDLSLLGFILNSGRSLVIAVNKWDG 331

Query: 332 YSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            S    ++                 H IS+  G G+  L   ++       +++  S+ 
Sbjct: 332 MSEEDRDHVKEMLDLRLGFVDFARVHFISALHGSGVGNLFESVQEAYECATRRVNTSML 390



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 28/204 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           D VE     ++ L +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  DGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSRRKATFLVANKTDGMD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                 D         H I++  G G+ +LI  +                  K     L+
Sbjct: 125 PDLATADFFSLGLGDVHPIAASHGRGVAQLIEHVL-----------VPFLPEKEQEVELT 173

Query: 385 QTVRYLEMASLNEKDCGLDIIAEN 408
           +        +  + +   + +AE 
Sbjct: 174 EEQANAAYWAEQQGELSDEALAEE 197


>gi|116494866|ref|YP_806600.1| GTP-binding protein EngA [Lactobacillus casei ATCC 334]
 gi|122263716|sp|Q039G4|DER_LACC3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|116105016|gb|ABJ70158.1| Predicted GTPase [Lactobacillus casei ATCC 334]
          Length = 435

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   LAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGKSEWLGKEFAVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+IL L +I S          +I +      +    K D   
Sbjct: 66  EPFLAQIKDQAEIAIDEADVILFLADIESGVTDADERVAQILYRAKKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD            S   G GL ++++ + +   ++ K +     
Sbjct: 126 RRQDIYDFYSLGFGEPYPLSGTHGIGLGDVLDAVLAAFPSEDKSVEDDSI 175



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 90/214 (42%), Gaps = 35/214 (16%)

Query: 195 DILFLKNDISSHISQ--GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
             + L + + + ++    +   +  +  K  ++G  N GKSSL NA+  ++  IV+ I G
Sbjct: 148 HGIGLGDVLDAVLAAFPSEDKSVEDDSIKFSLIGRPNVGKSSLVNAILGENRVIVSPIEG 207

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN 309
           TTRD +    +       + DTAGIR+   +    EK  + R    ++ +D++L +  IN
Sbjct: 208 TTRDAIDTKFEAVDETFTMIDTAGIRKRGKVYENTEKYAVMRALRAIDRSDVVLFV--IN 265

Query: 310 SKKEI----------SFPKNIDFIFIGTKSDLYST-----------YTEEY-------DH 341
           +++ I          +       I +  K D                 +E+         
Sbjct: 266 AEEGIREQDKKVAGYAHEAGRGIIIVVNKWDTVEKDNHTMKDFENLIRQEFQYLDYAPII 325

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            +S+ T + L+ L   I ++  N+ +++  S+ +
Sbjct: 326 FVSAKTKQRLQSLPAMIVAVSENQTRRIQSSVLN 359


>gi|39997323|ref|NP_953274.1| GTP-binding protein EngA [Geobacter sulfurreducens PCA]
 gi|81832003|sp|Q74AX4|DER_GEOSL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|39984214|gb|AAR35601.1| GTP-binding protein Era, putative [Geobacter sulfurreducens PCA]
 gi|298506260|gb|ADI84983.1| GTPase EngA [Geobacter sulfurreducens KN400]
          Length = 438

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L  +  AIV D+PG TRD     +        + DT G   E+
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGRRKAIVDDMPGVTRDRNYETVTRFDVPFILIDTGGFEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD-- 330
            D + ++  +++ L +E AD+IL L +  +          E+    +    F+  K D  
Sbjct: 66  SDRLLQQMREQSRLAMEEADVILFLMDGRAGLNPADVEVVEMLRRVDKPVFFVVNKVDGE 125

Query: 331 -LYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            L    +E Y         IS+    G+ +L++++ + L  +      
Sbjct: 126 TLEVAASEFYSLGVDNLLTISAEHNRGVRDLMDEVVAALPQRTTSPEE 173



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 29/235 (12%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            + A   +S   D     S E    +  L +++ + + Q       RN  KI ++G  N 
Sbjct: 128 EVAASEFYSLGVDNLLTISAEHNRGVRDLMDEVVAALPQRTTSPEERNATKIAVVGRPNV 187

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKE 287
           GKSSL N L   +  +    PGTTRD +            + DTAGIR   +T   +EK 
Sbjct: 188 GKSSLVNRLLGYERVVANPTPGTTRDSVDTWFTCNKKRYLLIDTAGIRRKGKTTQKIEKY 247

Query: 288 GIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST----- 334
            +  +   +E AD++L++                 +F      IF+  K D         
Sbjct: 248 SVVDSLRSIERADVVLIVLNAEEGVTEQDERIAGYAFEAGKACIFVVNKWDAIEKDNSSV 307

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                                +S+ TG+ L  ++ +++ +++   K++  S  + 
Sbjct: 308 GRFVDKIRTEFKYLAFVPIVFVSAKTGQRLNRIMEEVEKVMAQYVKRVTTSELNR 362


>gi|313680391|ref|YP_004058130.1| ribosome-associated GTPase enga [Oceanithermus profundus DSM 14977]
 gi|313153106|gb|ADR36957.1| ribosome-associated GTPase EngA [Oceanithermus profundus DSM 14977]
          Length = 433

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 61/283 (21%), Positives = 108/283 (38%), Gaps = 28/283 (9%)

Query: 125 LLEAESLADLISSETE-MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           L EA+ +  L+    E  Q    +       +        K+ H +        ++    
Sbjct: 77  LAEADLVLFLVDGRAELAQADYEVADYLRRKNKPVRLVATKVDHPKHEAYLGELYALGFG 136

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN--GYKIVILGHSNAGKSSLFNALAK 241
               +S E    +  L++ I + +   + GE        +I I+G  NAGKSSL NA+  
Sbjct: 137 DPIPTSVEHRRGLEELEDAIWAALP-AEEGETEVEVPPIRIAIIGRPNAGKSSLLNAILG 195

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENAD 300
           +D  IV+D PGTTRD + ++LD  G    + DTAGIR+  +  VE   I+R    ++ AD
Sbjct: 196 EDRVIVSDQPGTTRDSIDVELDYGGTRFVLVDTAGIRKRPETAVEHFAIQRAHRVIQEAD 255

Query: 301 LILLLKEINSKKEISFP-------KNIDFIFIGTKSD---------LYSTYTEEYDH--- 341
           + +L  +     +                I   TK D         +     E+  H   
Sbjct: 256 VAVLAVDPFELGDRELKMANEALDAGKPVILAVTKWDAVPKEERPEVRRQIREKLAHLEH 315

Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 S+ TG+ + ++      +     ++   +  +    +
Sbjct: 316 LPIVYTSAATGQNIHKIFQLATRLYHKARERFDTADLNRWVQV 358



 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 18/177 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+VI+G  N GKSSL+N L  +  A+V D  G TRD+    ++ E    K+ DT G+  +
Sbjct: 3   KVVIVGRPNVGKSSLYNRLLGRRDAVVADEAGVTRDLKEAVVETERGKFKLVDTGGL-WS 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D  E +  ++    +  ADL+L L +  ++         +    KN     + TK D  
Sbjct: 62  GDAWEPKIKEKVDRALAEADLVLFLVDGRAELAQADYEVADYLRRKNKPVRLVATKVDHP 121

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                L   Y   +      S     GLEEL + I + L  +  +    +P  +  +
Sbjct: 122 KHEAYLGELYALGFGDPIPTSVEHRRGLEELEDAIWAALPAEEGETEVEVPPIRIAI 178


>gi|218889917|ref|YP_002438781.1| GTP-binding protein EngA [Pseudomonas aeruginosa LESB58]
 gi|226741143|sp|B7UWJ2|DER_PSEA8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|218770140|emb|CAW25902.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa LESB58]
          Length = 493

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  IV D  GTTRD + I  +       + DTAG
Sbjct: 195 KDGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERNEEKYTLIDTAG 254

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R    I    EK  + +T   +++A++++ + +                       +  
Sbjct: 255 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLLGFVLETGRALVIA 314

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D       +Y                 H IS+  G G+  L   ++    +   + 
Sbjct: 315 LNKWDGMEAAERDYVKTELERRLLFVDFADIHFISALHGTGVGHLYKSVQESFRSAVTRW 374

Query: 370 PFS 372
           P S
Sbjct: 375 PTS 377



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   AIV +  G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + ++ +  +++   +E AD +L L +  +          E    +N     I  K D   
Sbjct: 65  EGIDAKMAEQSLQAIEEADAVLFLVDSRAGMTAADQMIAEHLRKRNKRSFLIANKVDTID 124

Query: 334 TYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
                 +           I++  G G+  ++ +   I      +   
Sbjct: 125 PDLARAEFSPLGLGDALPIAAAHGRGINHMLQEALGIFPKDNVEEEG 171


>gi|297588533|ref|ZP_06947176.1| ribosome-associated GTPase EngA [Finegoldia magna ATCC 53516]
 gi|297573906|gb|EFH92627.1| ribosome-associated GTPase EngA [Finegoldia magna ATCC 53516]
          Length = 438

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 11/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L   + S        E   +  K+ ++G  N GKSSL N L  ++  IVTDI GTTRD 
Sbjct: 155 DLLEAVVSKFDDNSNTESDDDITKVCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++ +G      DTAG+R+    D  VE+  + RT   ++ +D+ +L+ +       
Sbjct: 215 IDSKINYKGNEYIFIDTAGLRKRRKIDTEVERYSVVRTLSAIDRSDICVLMIDATEGVSE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE 337
                   +  +    I +  K DL    T 
Sbjct: 275 QDTKILGYAHDQGKAMIILVNKWDLVEKQTN 305



 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G +N GKS+LFN L KK +AI  D PG TRD L ++ + +     + DT G+  ++
Sbjct: 6   VAIVGRANVGKSTLFNKLIKKRIAITQDDPGVTRDRLYMEAEWQNKYFTVVDTGGLEPKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           ++I+ K   K+T L +E AD+IL + +             ++        I +  K D  
Sbjct: 66  NEIITKNIKKQTELAIETADVILFMVDGKQGITPIDMEVADMLRRTKKSVILVVNKIDHI 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 YD            S+    GL +L+  + S   +        
Sbjct: 126 KQQDNVYDFYNLGFYEIFPISASNSMGLGDLLEAVVSKFDDNSNTESDD 174


>gi|257089874|ref|ZP_05584235.1| GTP-binding protein engA [Enterococcus faecalis CH188]
 gi|312903296|ref|ZP_07762476.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0635]
 gi|256998686|gb|EEU85206.1| GTP-binding protein engA [Enterococcus faecalis CH188]
 gi|310633172|gb|EFQ16455.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0635]
 gi|315577718|gb|EFU89909.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0630]
          Length = 436

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 109/287 (37%), Gaps = 50/287 (17%)

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+  + +A+ L   I   +     L++  +         +  + +    +          
Sbjct: 92  GREGITDADELVAKILYRSNKPVILAVNKVDNP------EMRNDIYEFYAL--------G 137

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D    S    L     L   +    +  +  E   +  K  ++G  N GKSSL NA+ 
Sbjct: 138 LGDPFPVSGSHGLGIGDVLDEAVKHFPNTSE--EEDEDTIKFSLIGRPNVGKSSLINAIL 195

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
            +D  IV+DI GTTRD +    +  EG    + DTAG+R+   +    EK  + R    +
Sbjct: 196 GEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRGKVYESTEKYSVMRAMRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTE--------- 337
           E +D++L++  +N+++ I          +       I +  K D     T          
Sbjct: 256 ERSDIVLMV--LNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWDTVKKDTNTMRDFEAEI 313

Query: 338 ---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                         +S+ T + L +L   I+++  N+  ++P ++ +
Sbjct: 314 RDEFQYLDYAPIIFVSALTKQRLNKLPELIETVSMNQNLRIPSALLN 360



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL-------KEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+I+ +        + +    +I +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + Y+           +S   G G+ +++++      N  ++      
Sbjct: 126 MRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHFPNTSEEEDEDTI 175


>gi|29376112|ref|NP_815266.1| GTP-binding protein EngA [Enterococcus faecalis V583]
 gi|227518740|ref|ZP_03948789.1| GTP-binding protein EngA [Enterococcus faecalis TX0104]
 gi|227553350|ref|ZP_03983399.1| GTP-binding protein EngA [Enterococcus faecalis HH22]
 gi|257419285|ref|ZP_05596279.1| GTP-binding protein engA [Enterococcus faecalis T11]
 gi|37999534|sp|Q834T4|DER_ENTFA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|29343574|gb|AAO81336.1| GTPase, putative [Enterococcus faecalis V583]
 gi|227073821|gb|EEI11784.1| GTP-binding protein EngA [Enterococcus faecalis TX0104]
 gi|227177519|gb|EEI58491.1| GTP-binding protein EngA [Enterococcus faecalis HH22]
 gi|257161113|gb|EEU91073.1| GTP-binding protein engA [Enterococcus faecalis T11]
 gi|315575878|gb|EFU88069.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0309B]
 gi|315580530|gb|EFU92721.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0309A]
          Length = 436

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 109/287 (37%), Gaps = 50/287 (17%)

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+  + +A+ L   I   +     L++  +         +  + +    +          
Sbjct: 92  GREGITDADELVAKILYRSNKPVILAVNKVDNP------EMRNDIYEFYAL--------G 137

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D    S    L     L   +    +  +  E   +  K  ++G  N GKSSL NA+ 
Sbjct: 138 LGDPFPVSGSHGLGIGDVLDEAVKHFPNTSE--EEDEDTIKFSLIGRPNVGKSSLINAIL 195

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
            +D  IV+DI GTTRD +    +  EG    + DTAG+R+   +    EK  + R    +
Sbjct: 196 GEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRGKVYESTEKYSVMRAMRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTE--------- 337
           E +D++L++  +N+++ I          +       I +  K D     T          
Sbjct: 256 ERSDIVLMV--LNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWDTVKKDTNTMRDFEAEI 313

Query: 338 ---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                         +S+ T + L +L   I+++  N+  ++P ++ +
Sbjct: 314 RDEFQYLDYAPIIFVSALTKQRLNKLPELIETVSMNQNLRIPSALLN 360



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A   ++IV D PG TRD +    +  G    I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGVRISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL-------KEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+I+ +        + +    +I +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + Y+           +S   G G+ +++++      N  ++      
Sbjct: 126 MRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHFPNTSEEEDEDTI 175


>gi|258619961|ref|ZP_05715001.1| GTP-binding protein [Vibrio mimicus VM573]
 gi|258627193|ref|ZP_05721981.1| GTP-binding protein [Vibrio mimicus VM603]
 gi|262165075|ref|ZP_06032812.1| GTP-binding protein EngA [Vibrio mimicus VM223]
 gi|262172166|ref|ZP_06039844.1| GTP-binding protein EngA [Vibrio mimicus MB-451]
 gi|258580495|gb|EEW05456.1| GTP-binding protein [Vibrio mimicus VM603]
 gi|258587694|gb|EEW12403.1| GTP-binding protein [Vibrio mimicus VM573]
 gi|261893242|gb|EEY39228.1| GTP-binding protein EngA [Vibrio mimicus MB-451]
 gi|262024791|gb|EEY43459.1| GTP-binding protein EngA [Vibrio mimicus VM223]
          Length = 494

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R 
Sbjct: 206 IKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRR 265

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              I    EK  + +T   +E+A+++LL+ +     S +++S            +    K
Sbjct: 266 RKRINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNK 325

Query: 329 S-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 D+     +E D           H IS+  G G+  L   ++    +   ++  S
Sbjct: 326 WDGLNTDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYRSATTRVGTS 385

Query: 373 IPSH 376
           + + 
Sbjct: 386 VLTR 389



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L  +   + DT GI  ++
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           + VE +  +++   ++ AD++L + +  +   ++               I +  K D   
Sbjct: 65  EGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGID 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINK 357
                 +            ++  G G+  LI++
Sbjct: 125 ADAASAEFWQLGMEQMYQIAAAHGRGVGALIDR 157


>gi|297517162|ref|ZP_06935548.1| GTP-binding protein EngA [Escherichia coli OP50]
          Length = 194

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 27/178 (15%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---D 282
           G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    + DTAG+R+     D
Sbjct: 1   GRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITD 60

Query: 283 IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYST 334
            VEK  + +T   +E+A++++L+ +     S +++S            + +  K D  S 
Sbjct: 61  AVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQ 120

Query: 335 YTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             +E                  H IS+  G G+  L   ++    +  +++  S+ + 
Sbjct: 121 EVKEQVRETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTSMLTR 178


>gi|187778884|ref|ZP_02995357.1| hypothetical protein CLOSPO_02479 [Clostridium sporogenes ATCC
           15579]
 gi|187772509|gb|EDU36311.1| hypothetical protein CLOSPO_02479 [Clostridium sporogenes ATCC
           15579]
          Length = 439

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 97/258 (37%), Gaps = 29/258 (11%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  M  +        ++K+  ++    A   ++         S      +  + + +  H
Sbjct: 104 VAQMLRKSKKPVVLVVNKIDKLKDEDNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEH 163

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
               K          I  +G  N GKSSL N L  ++  IV++IPGTTRD +   ++ + 
Sbjct: 164 FKDDKSDGEEDERINIAFVGKPNVGKSSLINKLLGEERLIVSNIPGTTRDSIDSYVNTDF 223

Query: 267 YLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----- 318
               + DTAG+R      + +E+  + RT+  +E AD+ +L+ +          K     
Sbjct: 224 GEFTLIDTAGLRRKSKVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQKIIGYA 283

Query: 319 ---NIDFIFIGTKSDLYSTYTEEYDH------------------LISSFTGEGLEELINK 357
              N   + I  K DL     +  D                    IS+ TG+ + +++  
Sbjct: 284 HDLNKAILVIVNKWDLVEKDDKTMDKFKKELKVNLSFMAYAKYLFISAKTGQRVVKVLQT 343

Query: 358 IKSILSNKFKKLPFSIPS 375
            K    N  K++   + +
Sbjct: 344 AKECYDNYTKRVKTGVLN 361



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D PG TRD +  + +   Y   + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           +DI+  +  ++  + +E A++I+ L +       + +E++          + +  K D  
Sbjct: 66  EDIIISQMRRQAQIAIEMANVIIFLVDGKEGLAPADEEVAQMLRKSKKPVVLVVNKIDKL 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 Y+            SS    GL ++++++     +        
Sbjct: 126 KDEDNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEHFKDDKSDGEED 174


>gi|311745511|ref|ZP_07719296.1| ribosome-associated GTPase EngA [Algoriphagus sp. PR1]
 gi|126578066|gb|EAZ82286.1| ribosome-associated GTPase EngA [Algoriphagus sp. PR1]
          Length = 437

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 22/203 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ILG  N GKSS  NAL  K+ +IVT+  GTTRD +     L G    I+DTAGIR+ 
Sbjct: 179 KISILGRPNVGKSSFLNALLGKERSIVTNEAGTTRDAIHTRYKLYGQDFIITDTAGIRKK 238

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
             +    E   + R+   +E +D+I+++ + +   E        +    N   + +  K 
Sbjct: 239 AKVKEDVEFYSVMRSLRTLEESDVIIVMVDASRGLESQDINLISLGIKNNKGIVIMVNKW 298

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           DL      E DH   +      EE++ ++    +     +  S+ + +R    +   V+ 
Sbjct: 299 DLI-----EKDHKTMNKIK---EEMMERLGE--NKWIPIIFTSVLTKQRIFQAIELAVKV 348

Query: 390 LEMASLNEKDCGL-DIIAENLRL 411
            E  +   +   L D++ + +  
Sbjct: 349 YENKTRKIQTSKLNDVLQQEMER 371



 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 14/142 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++  AI  ++ G TRD         G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLVEERKAIEDNMSGVTRDRHYGHAQWTGKFFSVIDTGGYVTGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTKSDLY 332
           DD+ E E  K+  L VE AD+IL + + +      +  F           + +  K+D  
Sbjct: 65  DDVYEAEIRKQVKLAVEEADVILFVVDCHDGLTDLDTEFANELRGSEKPILVVANKAD-- 122

Query: 333 STYTEEYDHLISSFTGEGLEEL 354
               +E   + + F   G+ + 
Sbjct: 123 ---NQEQSFMSAEFYSLGISDF 141


>gi|297170725|gb|ADI21748.1| predicted GTPases [uncultured actinobacterium HF0130_15N16]
          Length = 442

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 110/298 (36%), Gaps = 44/298 (14%)

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G   + E ++    I  ++++   L++  +                 +  +    L   E
Sbjct: 96  GTTGVTEEDARIGAILRKSDVAVLLAVNKIDSNQR-----------DVDIWDFLSLGLGE 144

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSH-ISQGKLGEIIRNGYK-----IVILGHSNAGKSS 234
              V    S+   + +  + + + +         EI+ N  +     + I+G  N GKS+
Sbjct: 145 PMGVSALHSRNTGDLLDSIVSSLPAINFDNETTKEIMANPIEEEIPGVAIVGRPNVGKST 204

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKR 291
           LFN L   + ++V D+PGTTRD +   ++ E   ++  DTAG+R     DD  E     R
Sbjct: 205 LFNRLIGDERSVVHDMPGTTRDAIDTVVETELGPLRFIDTAGMRRKARVDDDTEYYSNLR 264

Query: 292 TFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST--------- 334
               ++ AD+ LL+ + +           E         + +  K +             
Sbjct: 265 ALRAIDKADVALLVIDSSEGVTSQDQRLAERVDAAGCPIVILMNKWETVDQESKDDLMFQ 324

Query: 335 -------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
                    E     IS+ TG G+  L++ +++ +     ++P    +    L   +Q
Sbjct: 325 VGQRLHFLGESPVLRISALTGRGVHRLVSALEAAIDAYETRVPTRKVNEVIQLAQSAQ 382



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 72/168 (42%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN +  +  AIV + PG TRD   ++ + +GY  ++ DT G   + 
Sbjct: 10  VSVVGRPNVGKSTLFNRILGRREAIVEEKPGVTRDRKVLEAEWQGYRFELVDTGGWMPSG 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
           + ++ +   ++   + ++DLI+L+ +  +           I    ++  +    K D   
Sbjct: 70  NELDDKVSAQSERAISDSDLIVLVVDGTTGVTEEDARIGAILRKSDVAVLLAVNKIDSNQ 129

Query: 334 TYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              + +D           +S+       +L++ I S L         +
Sbjct: 130 RDVDIWDFLSLGLGEPMGVSALHSRNTGDLLDSIVSSLPAINFDNETT 177


>gi|269792400|ref|YP_003317304.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100035|gb|ACZ19022.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 443

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 12/155 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + + S +      +   +G  K+ ++G  N GKSSLFN L  ++ A+V+ IPGTTRD
Sbjct: 153 DLLDSVVSALPDEGEPDGTDDGVIKLSVVGRPNVGKSSLFNRLIGQERAVVSPIPGTTRD 212

Query: 257 VLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---S 310
            + +D+ L    V++ DTAG+R     DD +E   + RT   ++ +D+ L+L +     +
Sbjct: 213 TVDVDVRLGDVDVRLMDTAGMRRKSRVDDPLEYYSVVRTLKAIDRSDVSLVLMDATELLT 272

Query: 311 KKEISF-----PKNIDFIFIGTKSDLYSTYTEEYD 340
           +++         +    I    K DL     +  D
Sbjct: 273 EQDKRLMLHVEERGKGLIIGVNKWDLLPPREDLGD 307



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 18/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKSSLFN L  + +AIV DIPG TRD L  + + +G    + DT GI   +
Sbjct: 4   VAIVGRPNVGKSSLFNRLIGRKLAIVEDIPGVTRDRLYAETEWDGKRFYLVDTGGIESAS 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
               +    ++  + ++  D+++ L +          +  E+    +   I    K D  
Sbjct: 64  PHPFQDVIARQVQMALKECDVVIFLLDGKEGVTAGDEAIAEMLRRSSKPVIVAMNKIDNP 123

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFK 367
                  D           IS   G G+ +L++ + S L ++ +
Sbjct: 124 KREDNVLDAYSLGFHTVMGISVEHGIGIGDLLDSVVSALPDEGE 167


>gi|15614201|ref|NP_242504.1| GTP-binding protein EngA [Bacillus halodurans C-125]
 gi|20137999|sp|Q9KCD4|DER_BACHD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|10174255|dbj|BAB05357.1| BH1638 [Bacillus halodurans C-125]
          Length = 437

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 89/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +    H  + +  +   +  +I ++G  N GKSSL NA+  ++  IV++IPGTTRD 
Sbjct: 154 DLLDACVEHFPEDEGDDYDEDTIRISLIGRPNVGKSSLVNAMLGEERVIVSNIPGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +      +     + DTAG+R+   +    EK  + R+   +E +D++L++       I 
Sbjct: 214 IDTAFSRDDQEYVLIDTAGMRKRGKVYESTEKYSVLRSLKAIERSDVVLVVLNGEEGIIE 273

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYS-----------TYTEEYDH-------LISSFTG 348
             K+I   +       I +  K D                 +E+          +S+ T 
Sbjct: 274 QDKKIAGYAHEAGRAIIIVVNKWDAVEKDDKTLHRFQQKIRDEFQFLDYAPVLFVSAKTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L+ ++  +K +  N   ++P  + +
Sbjct: 334 QRLQHVLPAVKKVSENHNLRVPTHVLN 360



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + VAIV D PG TRD +    +       + DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVAIVEDRPGVTRDRIYSHGEWLNREFNVIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + +  +   +  L ++ AD+I+ +               ++ F      +    K D   
Sbjct: 66  EPLLVQMRAQAELAIKEADVIIFIVNGREGVTAADQEVAKLLFRSKKPVVLGVNKIDHPD 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
              E Y+           IS   G GL +L++       
Sbjct: 126 MQEELYEFYSLGIGDPIPISGAHGLGLGDLLDACVEHFP 164


>gi|226946062|ref|YP_002801135.1| GTP-binding protein EngA [Azotobacter vinelandii DJ]
 gi|259645867|sp|C1DE52|DER_AZOVD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226720989|gb|ACO80160.1| Small GTP-binding protein EngA [Azotobacter vinelandii DJ]
          Length = 491

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  IV D  GTTRD + I  + +     + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERDEDKYTLIDTAG 252

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R    I    EK  + +T   +++A++++ + +                       +  
Sbjct: 253 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLLGFVLETGRALVIA 312

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D       +Y                 H IS+  G G+  L   +++   +   + 
Sbjct: 313 LNKWDGMEPGQRDYVKIELERRLMFADFADIHFISALHGTGVGHLYKSVQAAFQSAVTRW 372

Query: 370 PFS 372
           P S
Sbjct: 373 PTS 375



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 17/161 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   AIV +  G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKTRDAIVAEYAGLTRDRQYGEAKWQGRTYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + ++ +  +++   +E AD +L + +  +          E    +N     +  K D   
Sbjct: 65  EGIDAKMAEQSLQAIEEADAVLFMVDSRAGMTAADQLIAEHLRKRNKRSFLVANKVDTVD 124

Query: 334 TYTEEYDH---------LISSFTGEGLEELINKIKSILSNK 365
                 +           I++  G G+  ++     I    
Sbjct: 125 PDIARAEFSPLGLGDALPIAAAHGRGINAMLEAALGIFPRD 165


>gi|229545835|ref|ZP_04434560.1| GTP-binding protein EngA [Enterococcus faecalis TX1322]
 gi|229550027|ref|ZP_04438752.1| GTP-binding protein EngA [Enterococcus faecalis ATCC 29200]
 gi|255972808|ref|ZP_05423394.1| GTP-binding protein engA [Enterococcus faecalis T1]
 gi|256619052|ref|ZP_05475898.1| GTP-binding protein engA [Enterococcus faecalis ATCC 4200]
 gi|256762478|ref|ZP_05503058.1| GTP-binding protein engA [Enterococcus faecalis T3]
 gi|256853114|ref|ZP_05558484.1| GTP-binding protein engA [Enterococcus faecalis T8]
 gi|256958969|ref|ZP_05563140.1| GTP-binding protein engA [Enterococcus faecalis DS5]
 gi|256965136|ref|ZP_05569307.1| GTP-binding protein engA [Enterococcus faecalis HIP11704]
 gi|257079000|ref|ZP_05573361.1| GTP-binding protein engA [Enterococcus faecalis JH1]
 gi|257085194|ref|ZP_05579555.1| GTP-binding protein engA [Enterococcus faecalis Fly1]
 gi|257086755|ref|ZP_05581116.1| GTP-binding protein engA [Enterococcus faecalis D6]
 gi|257416082|ref|ZP_05593076.1| GTP-binding protein engA [Enterococcus faecalis AR01/DG]
 gi|257422630|ref|ZP_05599620.1| GTP-binding protein engA [Enterococcus faecalis X98]
 gi|294781352|ref|ZP_06746695.1| ribosome-associated GTPase EngA [Enterococcus faecalis PC1.1]
 gi|300861220|ref|ZP_07107307.1| ribosome-associated GTPase EngA [Enterococcus faecalis TUSoD Ef11]
 gi|307271029|ref|ZP_07552312.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4248]
 gi|307273236|ref|ZP_07554482.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0855]
 gi|307274973|ref|ZP_07556136.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2134]
 gi|307289094|ref|ZP_07569050.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0109]
 gi|312900749|ref|ZP_07760046.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0470]
 gi|312951482|ref|ZP_07770378.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0102]
 gi|229304833|gb|EEN70829.1| GTP-binding protein EngA [Enterococcus faecalis ATCC 29200]
 gi|229309034|gb|EEN75021.1| GTP-binding protein EngA [Enterococcus faecalis TX1322]
 gi|255963826|gb|EET96302.1| GTP-binding protein engA [Enterococcus faecalis T1]
 gi|256598579|gb|EEU17755.1| GTP-binding protein engA [Enterococcus faecalis ATCC 4200]
 gi|256683729|gb|EEU23424.1| GTP-binding protein engA [Enterococcus faecalis T3]
 gi|256711573|gb|EEU26611.1| GTP-binding protein engA [Enterococcus faecalis T8]
 gi|256949465|gb|EEU66097.1| GTP-binding protein engA [Enterococcus faecalis DS5]
 gi|256955632|gb|EEU72264.1| GTP-binding protein engA [Enterococcus faecalis HIP11704]
 gi|256987030|gb|EEU74332.1| GTP-binding protein engA [Enterococcus faecalis JH1]
 gi|256993224|gb|EEU80526.1| GTP-binding protein engA [Enterococcus faecalis Fly1]
 gi|256994785|gb|EEU82087.1| GTP-binding protein engA [Enterococcus faecalis D6]
 gi|257157910|gb|EEU87870.1| GTP-binding protein engA [Enterococcus faecalis ARO1/DG]
 gi|257164454|gb|EEU94414.1| GTP-binding protein engA [Enterococcus faecalis X98]
 gi|294451582|gb|EFG20041.1| ribosome-associated GTPase EngA [Enterococcus faecalis PC1.1]
 gi|295112973|emb|CBL31610.1| ribosome-associated GTPase EngA [Enterococcus sp. 7L76]
 gi|300850259|gb|EFK78009.1| ribosome-associated GTPase EngA [Enterococcus faecalis TUSoD Ef11]
 gi|306499803|gb|EFM69164.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0109]
 gi|306508421|gb|EFM77528.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2134]
 gi|306510221|gb|EFM79245.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0855]
 gi|306512527|gb|EFM81176.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4248]
 gi|310630448|gb|EFQ13731.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0102]
 gi|311292230|gb|EFQ70786.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0470]
 gi|315027277|gb|EFT39209.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2137]
 gi|315029396|gb|EFT41328.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4000]
 gi|315033958|gb|EFT45890.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0017]
 gi|315036967|gb|EFT48899.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0027]
 gi|315144428|gb|EFT88444.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2141]
 gi|315147253|gb|EFT91269.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4244]
 gi|315152495|gb|EFT96511.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0031]
 gi|315155773|gb|EFT99789.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0043]
 gi|315158060|gb|EFU02077.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0312]
 gi|315160456|gb|EFU04473.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0645]
 gi|315164003|gb|EFU08020.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1302]
 gi|315169046|gb|EFU13063.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1341]
 gi|315169716|gb|EFU13733.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1342]
 gi|323480712|gb|ADX80151.1| small GTP-binding domain protein [Enterococcus faecalis 62]
 gi|327535121|gb|AEA93955.1| ribosome-associated GTPase EngA [Enterococcus faecalis OG1RF]
          Length = 436

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 109/287 (37%), Gaps = 50/287 (17%)

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+  + +A+ L   I   +     L++  +         +  + +    +          
Sbjct: 92  GREGITDADELVAKILYRSNKPVILAVNKVDNP------EMRNDIYEFYAL--------G 137

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D    S    L     L   +    +  +  E   +  K  ++G  N GKSSL NA+ 
Sbjct: 138 LGDPFPVSGSHGLGIGDVLDEAVKHFPNTSE--EEDEDTIKFSLIGRPNVGKSSLINAIL 195

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
            +D  IV+DI GTTRD +    +  EG    + DTAG+R+   +    EK  + R    +
Sbjct: 196 GEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRGKVYESTEKYSVMRAMRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTE--------- 337
           E +D++L++  +N+++ I          +       I +  K D     T          
Sbjct: 256 ERSDIVLMV--LNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWDTVKKDTNTMRDFEAEI 313

Query: 338 ---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                         +S+ T + L +L   I+++  N+  ++P ++ +
Sbjct: 314 RDEFQYLDYAPIIFVSALTKQRLNKLPELIETVSMNQNLRIPSALLN 360



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL-------KEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+I+ +        + +    +I +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + Y+           +S   G G+ +++++      N  ++      
Sbjct: 126 MRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHFPNTSEEEDEDTI 175


>gi|325972629|ref|YP_004248820.1| GTP-binding protein engA [Spirochaeta sp. Buddy]
 gi|324027867|gb|ADY14626.1| GTP-binding protein engA [Spirochaeta sp. Buddy]
          Length = 514

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 29/182 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI ILG  N GKS+L N L  KD++IV+DI GTTRDV+    + +G    + DTAGIR 
Sbjct: 193 VKIAILGKPNTGKSTLTNLLVGKDISIVSDIAGTTRDVVMGSFNYKGSDFTVLDTAGIRR 252

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTK 328
               D+ VE   + R    ++ AD++LL+ +      +  K+I+     +    I +  K
Sbjct: 253 KSKVDEDVEYYSVNRAIKTIDEADVVLLMIDSVEGLADQDKKIANLIVRRGKGIILVLNK 312

Query: 329 SDLYSTYTEEYDHL------------------ISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL +    E + +                  IS+  G+ + +L++ + ++     K++ 
Sbjct: 313 IDLLTGIGNELEAIKDRIRFLFPILSFAPLTSISALKGQDIGKLLDMVWTVWKQLNKRVE 372

Query: 371 FS 372
            +
Sbjct: 373 TA 374



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 16/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K  AI    PG TRD++     L  + V + D+ G++   
Sbjct: 22  VSIIGRPNVGKSTLFNRLIGKRRAITDPTPGVTRDLIPERWLLGNHPVTLIDSGGVKVDR 81

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFPK--NIDFIFIGTKSDLYST 334
           D ++    +++   +E +D I+ + +        ++ + + +      + +  K D    
Sbjct: 82  DSMDDLVAQKSLSLLELSDAIVFMMDCTEVTAEDRELLEYLRPFTEKIVLVVNKVDDPKR 141

Query: 335 YTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
               +++          IS+  G G+EEL + +  +L+
Sbjct: 142 ENLLWEYYEYGYQRILGISAAHGLGIEELEDTLLGMLN 179


>gi|319899216|ref|YP_004159309.1| GTP-binding protein [Bartonella clarridgeiae 73]
 gi|319403180|emb|CBI76739.1| GTP-binding protein [Bartonella clarridgeiae 73]
          Length = 478

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS+LFN L  + +A+V + PG TRD       L+     + DTAG+ E
Sbjct: 3   LTIAIVGRPNVGKSTLFNRLVGQKLALVDNQPGVTRDRRIHSAKLQDLHFDVIDTAGLEE 62

Query: 280 TDD-IVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            D+  +E     +T + ++ ADLIL + +  S           +        + +  KS+
Sbjct: 63  ADNHTLEGRMRSQTKIAIDEADLILFVLDAKSGITSSDLDFASLIRKSGKPIVLVSNKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             +    EYD           IS+  G+GL +L + I   +
Sbjct: 123 SKAAIAGEYDAWSLRLGKPCSISAEHGQGLSDLRDAILDAI 163



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 74/182 (40%), Gaps = 29/182 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I I+G  N GKS+L N++  ++  +     G TRD +++D +     +K+ DTAG+R 
Sbjct: 208 IRIAIVGRPNTGKSTLINSMLGQNRLLTGPEAGITRDSISVDWEWNNRRIKLFDTAGLRR 267

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +  +   +  A++++++ +  +  E        +   +    I    K
Sbjct: 268 KSKVQEKLEKLSVIDSLRAIRFAEVVVIVFDATASFEKQDLQISDLVIREGRVPIIAFNK 327

Query: 329 SDLYSTYTEEYDHLISSFT------------------GEGLEELINKIKSILSNKFKKLP 370
            DL     E  + L    T                  G+G+++L+  I  +     +++ 
Sbjct: 328 WDLIENRHEALNTLYEKCTRLLPQVHGLRAVPLSGQYGQGIDKLMENITMMHRVWNRRIS 387

Query: 371 FS 372
             
Sbjct: 388 TG 389


>gi|237732490|ref|ZP_04562971.1| GTP-binding protein EngA [Citrobacter sp. 30_2]
 gi|226908029|gb|EEH93947.1| GTP-binding protein EngA [Citrobacter sp. 30_2]
          Length = 504

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 217 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRK 276

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 277 RGKITEAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 336

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  +   +E                  H IS+  G G+  L   ++    +  +++  +
Sbjct: 337 WDGLTQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTA 396

Query: 373 IPSH 376
           + + 
Sbjct: 397 MLTR 400



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 17/169 (10%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +S   L E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG
Sbjct: 4   LSDDFLNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEG 63

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN---- 319
                 DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+    
Sbjct: 64  REFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSR 123

Query: 320 -IDFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
                 +  K+D         D           I++  G G+  L+  +
Sbjct: 124 QKPTFLVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 172


>gi|242278504|ref|YP_002990633.1| GTP-binding protein EngA [Desulfovibrio salexigens DSM 2638]
 gi|259645870|sp|C6C0G0|DER_DESAD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|242121398|gb|ACS79094.1| small GTP-binding protein [Desulfovibrio salexigens DSM 2638]
          Length = 450

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 16/233 (6%)

Query: 118 FENGKIDLLEAESLADLISSETE-MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           FE  +  + EA++L  ++   T   Q    +     + +      ++K+        A  
Sbjct: 76  FEQAREAIEEAQALILVVDGRTGITQLDEQVAAYIRQSNKPILLLVNKVDGSELEATATA 135

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSH-ISQG---KLGEIIRNGYKIVILGHSNAGK 232
           DF          S E   ++L L+  ++   ++ G   +  +    G KI +LG  NAGK
Sbjct: 136 DFHALGFEMMAVSAEHGFNLLELREKVADMALATGIEYEEEDEEAKGLKIAMLGRPNAGK 195

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGI 289
           SS+ NAL  ++  IV+D+ GTTRD + +  +  G +    DTAG+R      D +E+  +
Sbjct: 196 SSMVNALTGEERVIVSDVAGTTRDSVDVTFESGGKIYTFVDTAGVRRRTNITDTIERFSV 255

Query: 290 KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST 334
            R       AD+ +++ +  +          E    + + FI    K DL S 
Sbjct: 256 VRALRSSTKADITVMVVDALAGITKQDKRLLEYLLREAVPFIIAVNKIDLVSK 308



 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 21/162 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +K  AI  D+PG TRD +  + +  G    + DT G+    
Sbjct: 5   IALIGRPNVGKSTLFNRLLRKKRAITHDMPGITRDRIYAEGNYNGVHYALIDTGGLVMES 64

Query: 282 DIVEKE----GIKRTFLEVENADLILLLKEIN------SKKEISFPK--NIDFIFIGTKS 329
           D   +E      ++    +E A  ++L+ +         ++  ++ +  N   + +  K 
Sbjct: 65  DNNSEEFQGDIFEQAREAIEEAQALILVVDGRTGITQLDEQVAAYIRQSNKPILLLVNKV 124

Query: 330 D---LYSTYTEEYD------HLISSFTGEGLEELINKIKSIL 362
           D   L +T T ++         +S+  G  L EL  K+  + 
Sbjct: 125 DGSELEATATADFHALGFEMMAVSAEHGFNLLELREKVADMA 166


>gi|268593180|ref|ZP_06127401.1| ribosome-associated GTPase EngA [Providencia rettgeri DSM 1131]
 gi|291311226|gb|EFE51679.1| ribosome-associated GTPase EngA [Providencia rettgeri DSM 1131]
          Length = 492

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + VE     ++   +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  EGVETHMAAQSLQAIEEADIVLFMVDARAGLMPADEGIAKHLRSRKKKTYLVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINK 357
             T   D         H I++  G G+ +LI +
Sbjct: 125 VTTAIGDFYSLGLGEIHPIAASHGRGVTQLIEQ 157



 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 83/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 206 IKLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDEREYILIDTAGVRK 265

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A+++LL+ +     S +++S            +    K
Sbjct: 266 RGKVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNAGRSLVIAVNK 325

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D       E+                 H IS+  G G+  L   ++    +  +++  +
Sbjct: 326 WDGMKPEDREHVKDMLELRLGFVDFARIHFISALHGSGVGNLFESVQEAYESATRRVGTA 385

Query: 373 IPSH 376
           + + 
Sbjct: 386 LLTR 389


>gi|184155357|ref|YP_001843697.1| GTP-binding protein EngA [Lactobacillus fermentum IFO 3956]
 gi|238692974|sp|B2GC35|DER_LACF3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|183226701|dbj|BAG27217.1| GTP-binding protein [Lactobacillus fermentum IFO 3956]
          Length = 437

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + +AIV D PG TRD L    +  G    + DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGIEMSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK-------EINSK-KEISFPKNIDFIFIGTKSDLYS 333
             +  +  ++  + +E AD+I+++        + + +  +I +  N   +    K D   
Sbjct: 66  QPLLTQIRQQAEIAIEEADVIIMVVNVENGVTDADEQVAQILYRSNKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
              + YD            SS  G GL ++++ +    + K  +    
Sbjct: 126 RRLDVYDFYRLGLGEPYPVSSVHGVGLGDMLDAVIENFAEKDAEEEDD 173



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 88/212 (41%), Gaps = 37/212 (17%)

Query: 199 LKNDISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           L + + + I     K  E   +  +   +G  N GKSSL NA+  ++  IV+D+ GTTRD
Sbjct: 152 LGDMLDAVIENFAEKDAEEEDDRIRFSFIGRPNVGKSSLVNAILGENRVIVSDMAGTTRD 211

Query: 257 VLTIDLD-LEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKK 312
            +       +G    + DTAGI++   +    E+  + R+   ++++D++L++  +N+++
Sbjct: 212 AINTQFTAKDGREFTMVDTAGIKKKGKLYENTERYALMRSMRAIDDSDVVLVV--LNAEE 269

Query: 313 EI----------SFPKNIDFIFIGTKSDLYSTYTEE-------------------YDHLI 343
            I          +       I +  K D      +                        +
Sbjct: 270 GIRELDKHIAGYAHEAGRAVIIVVNKWDTIPDRDQRTMTDFTNLIRHEFQYLSYAPIVFV 329

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           S+ T + L  L   I+    ++ +++  ++ +
Sbjct: 330 SAKTKQRLSRLPEMIEEAYDHQHRRIQSAVLN 361


>gi|33239840|ref|NP_874782.1| GTP-binding protein EngA [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|41017014|sp|Q7VDI8|DER_PROMA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|33237366|gb|AAP99434.1| Predicted GTPase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 456

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 11/150 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + S +   +L +      ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD 
Sbjct: 156 ELLDRLISILPPKELIKDEEEPIQVAIVGRPNVGKSSLLNAICGEKRAIVSAIRGTTRDT 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI---NSK 311
           +   +  EG L K+ DTAGIR    +    E  GI R+F  +E +D+ +L+ +     ++
Sbjct: 216 IDTSIVREGKLWKLIDTAGIRRRKSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTE 275

Query: 312 KEISFP-----KNIDFIFIGTKSDLYSTYT 336
           ++         +    + +  K D     T
Sbjct: 276 QDQRLAGRIEEEGRACLVVVNKWDAVEKDT 305



 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 19/163 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCQSREAIVHDQPGVTRDRSYQDGFWGDREFKLVDTGGLVFDD 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKE----INSKKEISFP----KNIDFIFIGTKS--- 329
           +     E  ++  L +  A + LL+ +    + +  E+          + +    K    
Sbjct: 66  ETEFLPEIREQANLALSEASIALLIVDGQQGLTAADEVIAAWLRHSKCEILLAVNKCESV 125

Query: 330 DLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNK 365
           +L  +   E+        + +S+  G G  EL++++ SIL  K
Sbjct: 126 ELGLSMAGEFWRLGLGEPYPVSAIHGAGTGELLDRLISILPPK 168


>gi|116629548|ref|YP_814720.1| GTP-binding protein EngA [Lactobacillus gasseri ATCC 33323]
 gi|116095130|gb|ABJ60282.1| Predicted GTPase [Lactobacillus gasseri ATCC 33323]
          Length = 427

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 111/292 (38%), Gaps = 47/292 (16%)

Query: 131 LADLISSETEMQRRLS--------MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           + + I ++ E+    +        +      +     + + +            D  E+ 
Sbjct: 68  IEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLYRTKKPIILAVNKADNPEQR 127

Query: 183 DVQNFSSKEVLNDILFLK--------NDISSHISQG--KLGEIIRNGYKIVILGHSNAGK 232
                     L D + +         + + + + +   K  +   +  +  ++G  N GK
Sbjct: 128 TDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGDKANQHEDDSIRFSVIGRPNVGK 187

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGI 289
           SSL NA+  +   IV++I GTTRD +      +G    I DTAGIR    +    EK  +
Sbjct: 188 SSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKVYEKTEKYSV 247

Query: 290 KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT----- 336
            R    +E +D+ LL+ + ++            +       I +  K DL   Y+     
Sbjct: 248 LRAISAIEESDITLLVLDASTGIREQDKHVAGYAHDAGRGVIIVVNKWDLPKKYSTSMKD 307

Query: 337 ------EEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                 +E+ +        +S+ TG+ + +++  +K +  N+ +++  S+ +
Sbjct: 308 FEDTIRQEFQYLDYAPIVFVSAKTGQRVPDILKLVKEVHDNQTRRIKSSVLN 359



 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D  G TRD +    +  G+   + DT GI    
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLDS 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +E++   +  + ++ AD+I++L ++            ++ +      I    K+D   
Sbjct: 66  GEIEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLYRTKKPIILAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             T+ YD           +S   G G+ +L++ I     +K  +      
Sbjct: 126 QRTDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGDKANQHEDDSI 175


>gi|323486971|ref|ZP_08092286.1| hypothetical protein HMPREF9474_04037 [Clostridium symbiosum
           WAL-14163]
 gi|323692018|ref|ZP_08106266.1| GTP-binding protein engA [Clostridium symbiosum WAL-14673]
 gi|323399743|gb|EGA92126.1| hypothetical protein HMPREF9474_04037 [Clostridium symbiosum
           WAL-14163]
 gi|323503941|gb|EGB19755.1| GTP-binding protein engA [Clostridium symbiosum WAL-14673]
          Length = 444

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + SH   G   E      +I I+G  N GKSS+ N L  ++  IV+DI GTTRD 
Sbjct: 158 ELLDAVVSHFEDGTGEEEEDERPRIAIVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDA 217

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI------ 308
           +  ++   G      DTAG+R    I    E+  I RT   VE AD++L++ +       
Sbjct: 218 VDTEIIHNGTEYVFIDTAGLRRKSKIKEELERYSIIRTVTAVERADVVLVVIDAVEGVTE 277

Query: 309 -NSK-KEISFPKNIDFIFIGTKSDLYST 334
            ++K   I+  +    I +  K D    
Sbjct: 278 QDAKIAGIAHERGKGIIIVVNKWDAIEK 305



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 19/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN LA   ++IV D PG TRD +  D         + DT GI  +T
Sbjct: 8   VAVVGRPNVGKSTLFNVLAGDMISIVKDTPGVTRDRIYADCTWLDKAFTLIDTGGIEPDT 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D++  +  ++  + +  AD+I+ + ++            ++        +    K D +
Sbjct: 68  KDVILAQMREQAEIAIATADVIIFIVDVRQGLTDSDSKVADMLRKSKKPVVLAVNKVDSF 127

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSIL 362
             +  +              IS+ +  GL EL++ + S  
Sbjct: 128 QKFGNDVYEFYNLGIGDPVGISAASRLGLGELLDAVVSHF 167


>gi|22298421|ref|NP_681668.1| GTP-binding protein EngA [Thermosynechococcus elongatus BP-1]
 gi|34222551|sp|Q8DKI1|DER_THEEB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|22294600|dbj|BAC08430.1| GTP-binding protein [Thermosynechococcus elongatus BP-1]
          Length = 449

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 10/198 (5%)

Query: 201 NDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
             +   I+    GE +      ++ I G  N GKSSL NAL   D AIV+ I GTTRD +
Sbjct: 156 ELLDQLITYLPAGETLPEAPEIQVAIAGRPNVGKSSLLNALIGSDRAIVSPISGTTRDAI 215

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              ++  G   +  DTAGIR+   +    E   + R F  +  +D++LL+ +  + +EI+
Sbjct: 216 DTVIEHGGTQYRFIDTAGIRKRTHVAYGPEMFSVHRAFKAIHRSDVVLLVLD--ALEEIT 273

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                    I  +         ++D ++   T   +    +++   L          + +
Sbjct: 274 EQDQRLAGHIADQGRACVLIVNKWDAVLDKDTYT-INAYRDRLYQRLHFLEWADALFVSA 332

Query: 376 HKRHLYHLSQTVRYLEMA 393
           H      L +    ++ A
Sbjct: 333 HTGQR--LEKIFAAVDAA 348



 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 19/163 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+  N LA +  AIV D PG TRD        +     + DT G+   D
Sbjct: 6   VAVVGRPNVGKSTFVNRLAGERDAIVHDEPGVTRDRTYRPAFWQDREFLVVDTGGLVFDD 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFI--GTKSDLY 332
           D        ++  L ++ A   + + +  +       +  ++ + +    +    K +  
Sbjct: 66  DSDFLPLIRQQAELALQEATAAIFVVDGQAGPTALDYEIAAWLRQLSLPVLVAVNKCESR 125

Query: 333 S----------TYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                      +      + ISS  G G  EL++++ + L   
Sbjct: 126 QMGQVQAAEFWSLGLGEPYPISSIHGSGTGELLDQLITYLPAG 168


>gi|226954466|ref|ZP_03824930.1| GTP-binding protein EngA [Acinetobacter sp. ATCC 27244]
 gi|294651482|ref|ZP_06728795.1| GTP-binding protein EngA [Acinetobacter haemolyticus ATCC 19194]
 gi|226834815|gb|EEH67198.1| GTP-binding protein EngA [Acinetobacter sp. ATCC 27244]
 gi|292822632|gb|EFF81522.1| GTP-binding protein EngA [Acinetobacter haemolyticus ATCC 19194]
          Length = 469

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 113/278 (40%), Gaps = 38/278 (13%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 73  EQSKTAIHEADIIVFVVDARAGLLASDEQIARELRTL-GKKVYLVANKVDGVHAEAALVE 131

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAG 231
              L   E   V     + V   +  +  ++          E  +N G ++ I+G  N G
Sbjct: 132 FYKLGMGEPLQVAASHGRGVQQMLEDVLAEVP---EDENPEEHNKNTGLRLAIIGRPNVG 188

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KS+L N L  ++  +  D PGTTRD + I  + +G    + DTAG+R     D+++EK  
Sbjct: 189 KSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVRRKGKVDEMIEKFS 248

Query: 289 IKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEEY- 339
           I +T   +++A++++++ +      ++++     +       +    K D  + Y  +  
Sbjct: 249 IVKTLQAMKDANVVVIVVDAREGIVEQDLHLIGYALEAGRAMVIAINKWDNMTEYDRKQC 308

Query: 340 ---------------DHLISSFTGEGLEELINKIKSIL 362
                           HLIS+  G G+ EL   I    
Sbjct: 309 KLDVERRFDFIPWAKIHLISALHGTGVGELYPSIHRAY 346



 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E +
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFIVVDTGGIGENE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
             ++    +++   +  AD+I+ + +  +    S  +              +  K D
Sbjct: 65  GGIDSYMAEQSKTAIHEADIIVFVVDARAGLLASDEQIARELRTLGKKVYLVANKVD 121


>gi|322421095|ref|YP_004200318.1| ribosome-associated GTPase EngA [Geobacter sp. M18]
 gi|320127482|gb|ADW15042.1| ribosome-associated GTPase EngA [Geobacter sp. M18]
          Length = 440

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 18/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L  +  A+V D+PG TRD    ++        + DT G   ET
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYAEVTRFDLPFILVDTGGFEPET 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY 332
            D + ++  +++   ++ ADLIL + +             ++    N    +I  K D  
Sbjct: 65  SDKLLQQMREQSRFAMDEADLILFVMDARDGLTPADRDVVDMLRRINKPVFYIINKVDGE 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                  D         H IS+    G+ +L++++ + L    +K      + 
Sbjct: 125 KQEANSGDFYSLGVDQIHTISAEHNRGVGDLMDEVLAALPYNREKEEDEEITR 177



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 29/228 (12%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +S   D  +  S E    +  L +++ + +   +  E      +I ++G  N GKS+L N
Sbjct: 134 YSLGVDQIHTISAEHNRGVGDLMDEVLAALPYNREKEEDEEITRIAVVGRPNVGKSTLVN 193

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFL 294
            L   +  +     GTTRD +     +      + DTAGIR        VEK  +     
Sbjct: 194 RLLGYERVVANPTAGTTRDAVDTRFTVNKKPYLLIDTAGIRRKGKTVQKVEKYSVMDALR 253

Query: 295 EVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS-------TYTEEY 339
            +E AD++L++                 ++      IF+  K D           +TEE 
Sbjct: 254 SIERADVVLIVLNAEEGVTEQDTKIAGYAYEAGRGCIFVVNKWDTVQKDNSTIGKFTEEI 313

Query: 340 -----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                         IS+ TG+   ++I ++  ++    K++     + 
Sbjct: 314 RRNFKYLPFAPILFISAETGQRTGKIIAEVDQVMEQYCKRVTTGELNR 361


>gi|222152562|ref|YP_002561737.1| GTP-binding protein EngA [Streptococcus uberis 0140J]
 gi|254783170|sp|B9DTQ3|DER_STRU0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|222113373|emb|CAR41004.1| GTP-binding protein EngA [Streptococcus uberis 0140J]
          Length = 436

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I   +   +  EI  N  +  ++G  N GKSSL NA+  ++  I + + GTTRD 
Sbjct: 154 DILDAIIEKLP-VEEEEINDNTIRFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D +G    + DTAG+R++  +    EK  + R    ++ +D++LL+  IN+++ 
Sbjct: 213 IDTHFTDQDGQEYNMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLLV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K DL                      +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDLLEKDNHTVAKWEADIRDQFQFLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK I  ++ K++P ++ +
Sbjct: 331 LTKQRLNKLPELIKKISESQNKRIPSAVLN 360



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      +    E    + +  N   I    K D   
Sbjct: 66  APFMEQIKHQAQIAMDEADVIVFVVSGKEGVTDADEYVAKMLYRTNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD            SS  G G  ++++ I   L  + +++  +  
Sbjct: 126 MRNDIYDFYALGLGDPYPASSVHGIGTGDILDAIIEKLPVEEEEINDNTI 175


>gi|50122138|ref|YP_051305.1| GTP-binding protein EngA [Pectobacterium atrosepticum SCRI1043]
 gi|81827050|sp|Q6D280|DER_ERWCT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|49612664|emb|CAG76114.1| probable GTP-binding protein [Pectobacterium atrosepticum SCRI1043]
          Length = 495

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 208 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYILIDTAGVRK 267

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 268 RGKVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVMNK 327

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S    +                  H IS+  G G+  L   +    S   +++  +
Sbjct: 328 WDGLSQEVRDQVKDTLDLRLGFIDFARIHFISALHGSGVGNLFESVTEAYSCATRRVSTA 387

Query: 373 IPSH 376
           + + 
Sbjct: 388 MLTR 391



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSD 330
           D VE     ++ + +E AD++L + +       + + I+     +    + +  K+D
Sbjct: 65  DGVETRMAGQSLVAIEEADIVLFMVDARAGLMPADEGIAKHLRSREKMTVLVANKTD 121


>gi|157371840|ref|YP_001479829.1| GTP-binding protein EngA [Serratia proteamaculans 568]
 gi|166920103|sp|A8GHW1|DER_SERP5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157323604|gb|ABV42701.1| small GTP-binding protein [Serratia proteamaculans 568]
          Length = 494

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 27/182 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 208 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRK 267

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 268 RGKVTETVEKFSVIKTLQAIEDANVVLLVVDAREGISDQDLSLLGFILNSGRSLVIVVNK 327

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S    ++                 H IS+  G G+  L   +        +++  S
Sbjct: 328 WDGMSEEDRDHVKEMLDLRLGFVDFARIHFISALHGSGVGNLFVSVLEAYECATRRVNTS 387

Query: 373 IP 374
           + 
Sbjct: 388 ML 389



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNID-----FIFIGTKSDLYS 333
           D VE     ++ L +E AD++L + +  +     ++   +++         +  K+D   
Sbjct: 65  DGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADLGIAQHLRNRQKATFLVANKTDGMD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                 D         H I++  G G+ +LI  +      +  +            Y   
Sbjct: 125 PDMAAADFYSLGLGDVHPIAASHGRGVAQLIEHVLVPFVGEKPEEVELTEEEANAAYWAE 184

Query: 385 QTVRYLEMASLNEKD 399
           Q    LE A    +D
Sbjct: 185 QEGETLEGAEEEPED 199


>gi|227515173|ref|ZP_03945222.1| GTP-binding protein EngA [Lactobacillus fermentum ATCC 14931]
 gi|227086505|gb|EEI21817.1| GTP-binding protein EngA [Lactobacillus fermentum ATCC 14931]
          Length = 437

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + +AIV D PG TRD L    +  G    + DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGIEMSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK-------EINSK-KEISFPKNIDFIFIGTKSDLYS 333
             +  +  ++  + +E AD+I+++        + + +  +I +  N   +    K D   
Sbjct: 66  QPLLTQIRQQAEIAIEEADVIIMVVNVENGVTDADEQVAQILYRSNKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLP 370
              + YD            SS  G GL ++++ +    + K  +  
Sbjct: 126 RRLDVYDFYQLGLGEPYPVSSVHGVGLGDMLDAVIENFAEKDAEEE 171



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 88/212 (41%), Gaps = 37/212 (17%)

Query: 199 LKNDISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           L + + + I     K  E   +  +   +G  N GKSSL NA+  ++  IV+D+ GTTRD
Sbjct: 152 LGDMLDAVIENFAEKDAEEENDRIRFSFIGRPNVGKSSLVNAILGENRVIVSDMAGTTRD 211

Query: 257 VLTIDLD-LEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKK 312
            +       +G    + DTAGI++   +    E+  + R+   ++++D++L++  +N+++
Sbjct: 212 AINTQFTAKDGREFTMVDTAGIKKKGKLYENTERYALMRSMRAIDDSDVVLVV--LNAEE 269

Query: 313 EI----------SFPKNIDFIFIGTKSDLYSTYTEE-------------------YDHLI 343
            I          +       I +  K D      +                        +
Sbjct: 270 GIRELDKHIAGYAHEAGRAVIIVVNKWDTIPDRDQRTMTDFTNLIRHEFQYLSYAPIVFV 329

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           S+ T + L  L   I+    ++ +++  ++ +
Sbjct: 330 SAKTKQRLSRLPEMIEEAYDHQHRRIQSAVLN 361


>gi|193212091|ref|YP_001998044.1| GTP-binding protein EngA [Chlorobaculum parvum NCIB 8327]
 gi|238692612|sp|B3QLF4|DER_CHLP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|193085568|gb|ACF10844.1| small GTP-binding protein [Chlorobaculum parvum NCIB 8327]
          Length = 438

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 59/329 (17%), Positives = 118/329 (35%), Gaps = 26/329 (7%)

Query: 97  EELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET-------EMQRRLSMEG 149
           + L              S    +     + +A+++  ++ + +       ++ + L    
Sbjct: 51  QFLLMDTGGYAPENDSLSVAMLDQTMRAIADADAIIFMVDARSGLTYLDLDIAKILKQTF 110

Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209
              ++     +  +    + +       F+E   +       V + +  +   +     +
Sbjct: 111 SDKKIFFAINKVDNPQLALEAAAMVRSGFTEPYLISARDGGGVADMLDDILETLPC--PE 168

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +  E+  +  K+ +LG  N GKSSL NAL   D  IV+D+PGTTRD +   L   G   
Sbjct: 169 SEDEELDDDSIKLAVLGRPNVGKSSLVNALLGTDRQIVSDVPGTTRDAIDSVLKRNGKEY 228

Query: 270 KISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPK 318
            + DTAG+R+    D  +E     RT   +E   + L+L +     E        ++  +
Sbjct: 229 ILIDTAGLRKRTKIDPGIEYYSSLRTERAIERCQVALVLLDAQLGLESQDMKIIHMAIER 288

Query: 319 NIDFIFIGTKSDLYS----TYTEEYDHLISSFTGEGLEELI--NKIKSILSNKFKKLPFS 372
               + +  K DL      T  +  D+L+      G   +I  + +      +       
Sbjct: 289 KKGVLILVNKWDLVEKDSKTSKKFTDNLMMQLGNIGYIPIIFTSALTKKNCYRAIDTAAQ 348

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           I  ++R     S   R+L+ A        
Sbjct: 349 IAINRRQKISTSNLNRFLQEALAMRHPAS 377



 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 19/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + ++  AIV   PG TRD      + +G    + DT G    +
Sbjct: 5   IALVGRPNVGKSTLFNRILRQKSAIVDPTPGVTRDRHINPGEWQGKQFLLMDTGGYAPEN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPK-------NIDFIFIGTKSDL 331
           D +    + +T   + +AD I+ + +  S     ++   K       +    F   K D 
Sbjct: 65  DSLSVAMLDQTMRAIADADAIIFMVDARSGLTYLDLDIAKILKQTFSDKKIFFAINKVDN 124

Query: 332 YSTYTEEYDHLISSFT---------GEGLEELINKIKSILSN 364
                E    + S FT         G G+ ++++ I   L  
Sbjct: 125 PQLALEAAAMVRSGFTEPYLISARDGGGVADMLDDILETLPC 166


>gi|330686012|gb|EGG97635.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU121]
          Length = 436

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 11/126 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD +  +   +G    + DTAG+R+
Sbjct: 176 IRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSYDGQDYVLIDTAGMRK 235

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              +    EK  + R    +E ++++L++ +               +  +    + +  K
Sbjct: 236 KGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDKRVAGYAHEEGKAIVIVVNK 295

Query: 329 SDLYST 334
            D    
Sbjct: 296 WDTVEK 301



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 17/156 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + +E AD+I+ +  +            ++ +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIEEADVIVFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNVE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKS 360
              + YD           IS   G GL +L++ +  
Sbjct: 126 MRNDIYDFYSLGFGEPYPISGSHGLGLGDLLDAVVE 161


>gi|319404573|emb|CBI78179.1| GTP-binding protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 477

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS+LFN L  + +A+V D PG TRD       L+     + DTAG+ E
Sbjct: 3   LTIAIVGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRRIHSAKLQDLHFDVIDTAGLEE 62

Query: 280 TDD-IVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            D+  +E     +T + ++ ADLIL + +  S           +        + +  KS+
Sbjct: 63  ADNHTLEGRMRAQTKIAIDEADLILFVLDAKSGITPSDLDFSSLIRKSGKPIVLVSNKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             +    EY+           IS+  G GL +L + I + +
Sbjct: 123 SKTAIAGEYEAWSLGLGEPCPISAEHGHGLSDLRDAIVAAI 163



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 36/270 (13%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            S+T +     +     GE   +  +    L+ +R  I A +     + V N   ++   
Sbjct: 122 ESKTAIAGEYEAWSLGLGEPCPISAEHGHGLSDLRDAIVAAI---GADKVFNLRQEKEKT 178

Query: 195 DILFLKNDISSHISQGKLGEII---RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
                 + IS +I      + +   +   +I ++G  N GKS+L N++ K+D  +     
Sbjct: 179 YTTAQISSISDNIDNTVEEDPVYDEKKTIRIAVVGRPNTGKSTLINSMLKQDRLLTGPEA 238

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK---EGIKRTFLEVENADLILLLKEI 308
           G TRD +++D +     +K+ DTAG+R    + EK     +  +   +  A++++++ + 
Sbjct: 239 GITRDSISVDWEWNNRRIKLFDTAGLRRKSKVQEKLERLSVVDSLRAIRFAEVVVIVFDA 298

Query: 309 NSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT------------- 347
            +  E        +   +    I    K DL     E  + L    T             
Sbjct: 299 TTSFEKQDLQISDLVIREGRVPIIAFNKWDLIENRHEALNTLYEKCTRLLPQVRGLRAVP 358

Query: 348 -----GEGLEELINKIKSILSNKFKKLPFS 372
                G+G+ +L+  I  +     +++   
Sbjct: 359 LSGLYGQGINKLMENITMMHRVWNRRISTG 388


>gi|116051824|ref|YP_789333.1| GTP-binding protein EngA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122260971|sp|Q02RV3|DER_PSEAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|115587045|gb|ABJ13060.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 493

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  ++  IV D  GTTRD + I  +    +  + DTAG
Sbjct: 195 KDGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERNEEMYTLIDTAG 254

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R    I    EK  + +T   +++A++++ + +                       +  
Sbjct: 255 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLLGFVLETGRALVIA 314

Query: 326 GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D       +Y                 H IS+  G G+  L   ++    +   + 
Sbjct: 315 LNKWDGMEAAERDYVKTELERRLLFVDFADIHFISALHGTGVGHLYKSVQESFRSAVTRW 374

Query: 370 PFS 372
           P S
Sbjct: 375 PTS 377



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 17/162 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   AIV +  G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + ++ +  +++   +E AD +L L +  +          E    +N     I  K D   
Sbjct: 65  EGIDAKMAEQSLQAIEEADAVLFLVDSRAGMTAADQMIAEHLRKRNKRSFLIANKVDTID 124

Query: 334 TYTEEYDH---------LISSFTGEGLEELINKIKSILSNKF 366
                 +           I++  G G+  ++ +   I     
Sbjct: 125 PDLARAEFSPLGLGDALPIAAAHGRGINHMLQEALGIFPKDN 166


>gi|291543597|emb|CBL16706.1| ribosome-associated GTPase EngA [Ruminococcus sp. 18P13]
          Length = 442

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 19/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + ++IV D PG TRD +    +  G    + DT GI  +T
Sbjct: 6   VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYSKCEWRGREFMVVDTGGIEPDT 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLY 332
           DD++  +  ++  + +  AD+I+L+ ++         +  ++        +    K D  
Sbjct: 66  DDVILAQMRRQAEVAIHRADVIVLVTDVRCGVTANDYAVADMLQKSGKPVVLAVNKCDTI 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSN 364
                E              ISS  G G  +++++I   L  
Sbjct: 126 GEPPLELYEFYNLGIGEPFPISSQHGHGTGDMLDEILKYLPE 167



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 29/204 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ++I  ++ +    +   +  K+ ++G  NAGKSSL N +A ++  IV+DI GTTRD 
Sbjct: 156 DMLDEILKYLPETDAEDYDEDCIKVAVIGKPNAGKSSLINKIAGEERVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK--- 311
               ++ E       DTAGIR+   I E+     + R ++ V+ AD+ +++ +  +    
Sbjct: 216 TDTVVENEQGKFVFIDTAGIRKKSRITERVEHFSVLRAYMAVDRADVCIIMIDAQTGFTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE---------EYDH---------LISSFTG 348
                   +  +    I    K DL    T          E D           IS+ TG
Sbjct: 276 QDSKVAGYAHEQGKASIIAVNKWDLIEKDTNTMKEFQEKLEKDFSFMSYVPFVFISAKTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           + + +L   I  + +    ++   
Sbjct: 336 QRVNKLFEMIHFVANQNAIRISTG 359


>gi|255975864|ref|ZP_05426450.1| GTP-binding protein engA [Enterococcus faecalis T2]
 gi|256961938|ref|ZP_05566109.1| GTP-binding protein engA [Enterococcus faecalis Merz96]
 gi|257082561|ref|ZP_05576922.1| GTP-binding protein engA [Enterococcus faecalis E1Sol]
 gi|293383006|ref|ZP_06628924.1| ribosome-associated GTPase EngA [Enterococcus faecalis R712]
 gi|293389505|ref|ZP_06633962.1| ribosome-associated GTPase EngA [Enterococcus faecalis S613]
 gi|307278085|ref|ZP_07559169.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0860]
 gi|312907523|ref|ZP_07766514.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 512]
 gi|312910141|ref|ZP_07768988.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 516]
 gi|255968736|gb|EET99358.1| GTP-binding protein engA [Enterococcus faecalis T2]
 gi|256952434|gb|EEU69066.1| GTP-binding protein engA [Enterococcus faecalis Merz96]
 gi|256990591|gb|EEU77893.1| GTP-binding protein engA [Enterococcus faecalis E1Sol]
 gi|291079671|gb|EFE17035.1| ribosome-associated GTPase EngA [Enterococcus faecalis R712]
 gi|291081122|gb|EFE18085.1| ribosome-associated GTPase EngA [Enterococcus faecalis S613]
 gi|306505482|gb|EFM74668.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0860]
 gi|310626551|gb|EFQ09834.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 512]
 gi|311289414|gb|EFQ67970.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 516]
 gi|315172323|gb|EFU16340.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1346]
          Length = 436

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 109/287 (37%), Gaps = 50/287 (17%)

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+  + +A+ L   I   +     L++  +         +  + +    +          
Sbjct: 92  GREGITDADELVAKILYRSNKPVILAVNKVDNP------EMRNDIYEFYAL--------G 137

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D    S    L     L   +    +  +  E   +  K  ++G  N GKSSL NA+ 
Sbjct: 138 LGDPFPVSGSHGLGIGDVLDEAVKHFPNTSE--EEDEDTIKFSLIGRPNVGKSSLINAIL 195

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
            +D  IV+DI GTTRD +    +  EG    + DTAG+R+   +    EK  + R    +
Sbjct: 196 GEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRGKVYESTEKYSVMRAMRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTE--------- 337
           E +D++L++  +N+++ I          +       I +  K D     T          
Sbjct: 256 ERSDIVLMV--LNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWDTVKKDTNTMRDFEAEI 313

Query: 338 ---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                         +S+ T + L +L   I+++  N+  ++P ++ +
Sbjct: 314 RDEFQYLDYAPIIFVSALTKQRLNKLPELIETVSMNQNLRIPSALLN 360



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL-------KEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+I+ +        + +    +I +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + Y+           +S   G G+ +++++      N  ++      
Sbjct: 126 MRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHFPNTSEEEDEDTI 175


>gi|71908594|ref|YP_286181.1| GTP-binding protein EngA [Dechloromonas aromatica RCB]
 gi|123760409|sp|Q47BS0|DER_DECAR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|71848215|gb|AAZ47711.1| Small GTP-binding protein protein domain:GTP-binding protein
           [Dechloromonas aromatica RCB]
          Length = 443

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 11/143 (7%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
             + +  E   +  ++ I+G  N GKS+L N L  ++  I  D PGTTRD + ID +  G
Sbjct: 163 FPEPEEDEWHSDSVRVAIVGRPNVGKSTLINTLLGEERVIAFDAPGTTRDSIEIDFERGG 222

Query: 267 YLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEIS 315
               + DTAG+R+   +    EK  + +T   +E+A++++L+ +  +          +  
Sbjct: 223 RKYVLVDTAGMRKRGKVFESIEKFSVVKTLQSIEDANVVILMVDAQADVSDQDAHIADFI 282

Query: 316 FPKNIDFIFIGTKSDLYSTYTEE 338
                  +    K D    YT E
Sbjct: 283 LQSGRALVVAVNKWDGLDAYTRE 305



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           +V++G  N GKS+LFN L K   AIV D+PG TRD       L      + DT G     
Sbjct: 5   LVLVGRPNVGKSTLFNRLTKSRDAIVADMPGLTRDRHYGHGKLGKKPYLVVDTGGFEPLV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLY 332
            + +  E  ++T   +  AD I+ + +  S      KEI+      +        K++  
Sbjct: 65  KEGILHEMARQTEQAIAEADAIIFVVDGRSGLTPHDKEIANKLRRIDRPVFVAVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
           ++   E +           IS+  GEG+  L+           +  
Sbjct: 125 NSGMVEAEFHELGLGEPNAISAAHGEGIRGLVEMALESFPEPEEDE 170


>gi|222055249|ref|YP_002537611.1| small GTP-binding protein [Geobacter sp. FRC-32]
 gi|254783155|sp|B9M914|DER_GEOSF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|221564538|gb|ACM20510.1| small GTP-binding protein [Geobacter sp. FRC-32]
          Length = 441

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L  +  A+V D+PG TRD    D++       + DT G   ET
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYADVNRFDVPFILIDTGGFEPET 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY 332
            D + ++  +++ L ++ ADLIL + +             E+    N    ++  K D  
Sbjct: 65  SDRLLQQMREQSQLAMDEADLILFVMDGRDGLTPADVEVVEMLRRVNKPVFYVVNKIDGD 124

Query: 333 STYTE---------EYDHLISSFTGEGLEELINKIKSILSNK 365
                         E    IS+    G+ +L+ ++ + L NK
Sbjct: 125 RQENAAGDFYSLGIEQIFTISAEHNRGVNDLMEEVIAALPNK 166



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 29/228 (12%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +S   +     S E    +  L  ++ + +       +     +I ++G  N GKS+L N
Sbjct: 134 YSLGIEQIFTISAEHNRGVNDLMEEVIAALPNKTAPAVDEEVTRIAVIGRPNVGKSTLVN 193

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFL 294
            L   +  +    PGTTRD +    +       + DTAGIR   +T + +EK  +  +  
Sbjct: 194 RLLGVERVVANPTPGTTRDSIDTYFNCNKKRYLLIDTAGIRRKGKTTEKIEKYSVVDSLR 253

Query: 295 EVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST------------ 334
            +E AD++L++ +               +F      IF+  K D  S             
Sbjct: 254 SIERADVVLIVIDAEEGVTEQDTKIAGYAFEAGRGCIFVVNKWDAISKDNASMGIFVEKI 313

Query: 335 ------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                         +S+ TG+ L +++ ++ S++    K++  S  + 
Sbjct: 314 RMEFKYLPFAPIVFVSAKTGQRLGKIMTEVDSVMEQFAKRISTSDLNR 361


>gi|319410209|emb|CBY90548.1| GTP-binding protein engA [Neisseria meningitidis WUE 2594]
          Length = 536

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  DI     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 206 LIEDILETFPEPEKEEEEAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 265

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 266 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 325

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 326 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 385

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 386 DGLFDSIQAAYNAAMIKMPTPKITR 410



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 56  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKNIDFIFI---------G 326
           D  +  E  K+T   V+ AD ++ L +  +      K I+         +         G
Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 175

Query: 327 TKSDLYSTYTE---EYDHLISSFTGEGLEELINKIKSIL 362
            ++ L + + E      ++IS   G+G+  LI  I    
Sbjct: 176 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETF 214


>gi|239997025|ref|ZP_04717549.1| GTP-binding protein EngA [Alteromonas macleodii ATCC 27126]
          Length = 481

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 27/191 (14%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +   +     K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     
Sbjct: 185 QRQRLQELPIKLAIVGKPNVGKSTLTNRILGEERVVVFDMPGTTRDSVYIPMERDEREYI 244

Query: 271 ISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KN 319
           + DTAG+R+     + VEK  I +T   +E A+++LL+ +     + +++S         
Sbjct: 245 LIDTAGVRKRKKISEAVEKFSIVKTLQAIEEANVVLLVIDAREGITDQDLSLLGFVLNSG 304

Query: 320 IDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILS 363
              +    K      D+      E D           H IS+  G G+  L   ++    
Sbjct: 305 RSLVVAVNKWDGLSTDVKDDIKREMDRRLGFIDFARIHFISALHGSGVGNLFESVQEAYM 364

Query: 364 NKFKKLPFSIP 374
           +  K++  ++ 
Sbjct: 365 SATKRINTALL 375



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 17/188 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD        E     + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTNTRDALVADYPGLTRDRKYGQAKFEKRQFIVVDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + ++ E  +++ L +E AD++L L +       + + I+      N     +  K D   
Sbjct: 65  EGIDAEMAQQSLLAIEEADVVLFLVDARAGMLPADQGIADHLRRINKKVFVVANKVDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             +E  +           I++  G G+ +L+      L + F  +       +      +
Sbjct: 125 GDSESAEFYSLGLGDIKQIAAAHGRGVSQLLQDALKPLESDFPDMEIIDEEPEEEEDAET 184

Query: 385 QTVRYLEM 392
           Q  R  E+
Sbjct: 185 QRQRLQEL 192


>gi|254417083|ref|ZP_05030829.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196176061|gb|EDX71079.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 461

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 97/242 (40%), Gaps = 38/242 (15%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            I+A   +          S         L + + +H+    +         + I+G  N 
Sbjct: 129 LIQAAEFWELGLGEPFPVSAIHGAGTGELLDQLITHLPTVGMLPDTSE-INVAIVGRPNV 187

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--------VKISDTAGIRETDD 282
           GKSSL NAL  +  AIV+ + GTTRD + + ++  G           ++ DTAGIR   +
Sbjct: 188 GKSSLLNALTGEKRAIVSSVSGTTRDAIDMIVERPGNPETETESQLYRLIDTAGIRRKKN 247

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIG-TKSDL 331
           +    E  GI R F  +  AD++L + +        + K      ++     I   K D 
Sbjct: 248 VEYGPEFFGINRAFKAIRRADVVLFVVDALDGVTEQDQKLAGRIAEDGRAAVILVNKWDA 307

Query: 332 YSTYT---EEYD---------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               T    EY+                 +S+ TG+ ++++++ + ++ +   +++  S+
Sbjct: 308 IEKDTYTIYEYEKLLKNRLYFVEWAPMIFVSALTGKRVDKILDLVDTVAAEHQRRVSTSV 367

Query: 374 PS 375
            +
Sbjct: 368 IN 369



 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N LA    AIV D PG TRD        +     I DT G+   D
Sbjct: 6   VAVIGRPNVGKSTLVNRLAGVMDAIVHDQPGVTRDRTYRPAFWQDRDYSIVDTGGLVFDD 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIG--TKSDLY 332
           D        ++    +  A   +L+ +              + +      +    K +  
Sbjct: 66  DTEFLPLIREQAMAALSEASAAILVVDGQMGPTAADYAIADWLRQHPVPVVLAVNKCESP 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILS 363
                +               S+  G G  EL++++ + L 
Sbjct: 126 QQGLIQAAEFWELGLGEPFPVSAIHGAGTGELLDQLITHLP 166


>gi|229543990|ref|ZP_04433049.1| small GTP-binding protein [Bacillus coagulans 36D1]
 gi|229325129|gb|EEN90805.1| small GTP-binding protein [Bacillus coagulans 36D1]
          Length = 436

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 15/150 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  H  +    E   +  K   +G  N GKSSLFNA+  ++  IV+DI GTTRD 
Sbjct: 154 DLLDAVVKHFPEKADEEYGEDVIKFCFIGRPNVGKSSLFNAILGEERVIVSDIEGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +      E     + DTAG+R+   +    EK  + R    +E +D++ ++  +N ++ I
Sbjct: 214 VDTVYTYEDQTYVMIDTAGMRKKGKVYENTEKYSVLRALRAIERSDVVCVV--LNGEEGI 271

Query: 315 ----------SFPKNIDFIFIGTKSDLYST 334
                     +       I +  K D    
Sbjct: 272 REQDKRIAGYAHEAGRGVIIVVNKWDAVQK 301



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYSPAEWLTHEFNVIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +   ++  ++  + ++ AD+I+ +      + S  E    I +      +    K D   
Sbjct: 66  EPFLEQIRQQAEIAIQEADVIIFITSGREGVTSADEMVAKILYRSKKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
             T+ YD           IS   G GL +L++ +      K  + 
Sbjct: 126 MRTQIYDFYALGFGDPFPISGAHGLGLGDLLDAVVKHFPEKADEE 170


>gi|226227007|ref|YP_002761113.1| GTP-binding protein EngA [Gemmatimonas aurantiaca T-27]
 gi|259645877|sp|C1A8T3|DER_GEMAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|226090198|dbj|BAH38643.1| GTP-binding protein EngA [Gemmatimonas aurantiaca T-27]
          Length = 436

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 16/168 (9%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + ++I + +  E  R+  ++ ++G  N GKSS  N L  +D  +V+D  GTTRD 
Sbjct: 154 DLLDAVVANIPEVEEEE--RDAVRVAVIGRPNVGKSSFVNRLLGEDRLVVSDESGTTRDA 211

Query: 258 LTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +   +      +   DTAG+R     DD VE     RT   ++++D+ +L+ +     + 
Sbjct: 212 IDAPMRYHDTDLVFVDTAGLRRQSRIDDGVEFYSALRTRRAIDSSDVCILMIDATEGLQN 271

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
                  +++      I +  K DLY    ++ D     F  E +E++
Sbjct: 272 QDLKIATMAWEAGRGLILVINKWDLYE---DKTDKSADKFKKEAVEKV 316



 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 19/157 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS LFN +  +  AIV+D  GTTRD    + +  G    + DT G+ E  
Sbjct: 6   VAVVGRPNVGKSHLFNRVIGEATAIVSDEAGTTRDRHFGEAEWAGRQFWLVDTGGLVEDS 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKSDLY 332
             +++    ++    +E ADL+L + +       +  + +   +N    ++ +  K D  
Sbjct: 66  HLLMDTAIRRQVMQAIEEADLMLFVVDAKVGVHPSDARIVDILRNSQKPWMLVANKVD-D 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKS 360
              T+ Y+            S+  G+G  +L++ + +
Sbjct: 125 PASTDFYEFFRLGVTDVYPVSAQNGKGSGDLLDAVVA 161


>gi|212702039|ref|ZP_03310167.1| hypothetical protein DESPIG_00041 [Desulfovibrio piger ATCC 29098]
 gi|212674554|gb|EEB35037.1| hypothetical protein DESPIG_00041 [Desulfovibrio piger ATCC 29098]
          Length = 382

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 11/156 (7%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            E  ++I  L  +++  +      E      ++ +LG  NAGKSS+ NALA ++  IV+D
Sbjct: 90  AEHGHNIRALTEELADLLPDDYEAEHEPPALRLAMLGRPNAGKSSMINALAGEERMIVSD 149

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLK 306
           + GTTRD + +  + +G      DTAG+R   +  DIVEK  +         AD+ LL  
Sbjct: 150 VAGTTRDSVDVRFERDGQDYVFVDTAGVRRRTKITDIVEKYSVNAALKSTTKADVTLLTL 209

Query: 307 EINSKK--------EISFPKNIDFIFIGTKSDLYST 334
           +             ++   + I F+ +  K DL   
Sbjct: 210 DATEGVSQQDKRLMDLLDTRKIPFMVLVNKCDLVPA 245


>gi|53802988|ref|YP_115285.1| GTPase family protein [Methylococcus capsulatus str. Bath]
 gi|81823578|sp|Q603B5|DER_METCA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|53756749|gb|AAU91040.1| GTPase family protein [Methylococcus capsulatus str. Bath]
          Length = 463

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 29/204 (14%)

Query: 198 FLKNDISSHI-SQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L   + + +   G+ GE    G  +I ++G  N GKS+L N +  ++  +V D PGTTR
Sbjct: 153 ALLERVEALLPESGETGETEAEGGIRIAVVGRPNVGKSTLVNRILGEERVVVYDQPGTTR 212

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK- 311
           D + I  +  G    + DTAGIR    +    EK  + ++F  +E A +++ L + +   
Sbjct: 213 DSIYIPFERRGERYTLIDTAGIRRRARVNEGVEKFSVIKSFQAIEKAHVVIYLVDASEGL 272

Query: 312 -------KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTG 348
                    +        +    K D       E                  + IS+  G
Sbjct: 273 TDQDANLLGMVLEIGRGLLIGFNKWDGLEPEQREKVKRQIDVKLPFLEFAKKYFISALHG 332

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
            G+  L++ +K I  +    L  S
Sbjct: 333 TGVGVLMDAVKPIYQSAMLDLSAS 356



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 17/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKS+LFN L +   A+V D PG TRD     +        + DT GI E  
Sbjct: 5   VALIGRTNVGKSTLFNYLTRTRDALVADFPGLTRDRQYGRVQRGERDYFVVDTGGIIEAA 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPK----NIDFIFIGTKSDLYS 333
           + ++ + +K+    ++ AD+IL L ++     +  E+   +    N   + +  K D   
Sbjct: 65  EGIDDQAMKQVDHVLDEADVILFLVDVHAGMTAGDELIADRLRRINKPVLLVANKIDGTQ 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                 +           IS+  G G+  L+ +++++L    +    
Sbjct: 125 ALIAGAEFHAFGLGEPLLISAAHGTGVHALLERVEALLPESGETGET 171


>gi|310778034|ref|YP_003966367.1| ribosome-associated GTPase EngA [Ilyobacter polytropus DSM 2926]
 gi|309747357|gb|ADO82019.1| ribosome-associated GTPase EngA [Ilyobacter polytropus DSM 2926]
          Length = 439

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  +I+Q +L E    G K+ I+G  NAGKSSL N L+ K+ AIV+DI GTTRD 
Sbjct: 155 DMLDTIVQNINQLELPEEEEEGLKLAIIGKPNAGKSSLVNRLSGKERAIVSDIAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +    +       + DTAGIR     ++ +E   + R    ++ +D+ +L+ +       
Sbjct: 215 IDTTFEYNYNKYILIDTAGIRRKSKVEESLEYYSVLRAIKTIKRSDVCMLMLDAQEGITE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
                  I++ +    I +  K D     T                        +S+ TG
Sbjct: 275 QDKKIAGIAYDEKKPIIVVMNKWDALKKETNTMKDMKALILSELPFLNYAPVEFVSALTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           +   +L++   ++     K++   I +
Sbjct: 335 QRTLKLLDLADTVYDEYTKRISTGILN 361



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 9/132 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    +AIV D PG TRD L  + D  G    I DT G+    
Sbjct: 5   VAIVGRPNVGKSTLFNKLVGDRIAIVDDQPGVTRDRLYRETDWLGTEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLY 332
            D +  +  ++  + +  AD+IL + +    + +  E    I   KN   I    K D +
Sbjct: 65  KDFMMTKIKQQAEVAINEADVILFVVDGKAGVTALDEEVAYILRKKNKPVILCVNKVDNF 124

Query: 333 STYTEEYDHLIS 344
              +++     S
Sbjct: 125 QRQSDDVYDFWS 136


>gi|299144092|ref|ZP_07037172.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518577|gb|EFI42316.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 439

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 29/193 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++  +G  N GKSSL N +  ++  IVTDIPGTTRD +    +  G      DTAG+R+
Sbjct: 176 IRVTFIGKPNVGKSSLINRILGEERVIVTDIPGTTRDAIDSKFNFNGENYVFVDTAGLRK 235

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTK 328
              I    E+  + RT   +E A + +L+ +         +     +   N   I    K
Sbjct: 236 KKKIYENIERYSVIRTLTAIERASVCVLVIDAYEGVSEQDSKIVGYAHDNNKAIIVAVNK 295

Query: 329 SDLYST------------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL                             IS+ TG+ +++L+  I  + +N   ++ 
Sbjct: 296 WDLIEKDNSTMKKFESDIRKRLPFINYAPILFISAQTGQRVDKLLEMISLVNNNYNHRIK 355

Query: 371 FSIPSHKRHLYHL 383
             + +   +   L
Sbjct: 356 TGVLNDILNRAVL 368



 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  K ++I  D PG TRD +  D         + DT G+   D
Sbjct: 6   VSIIGTPNVGKSTLFNKIVGKKISITEDTPGVTRDRIYSDATWLNKQFLLVDTGGLDLKD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           + +    IK +  L ++ +D+I+ L +      ++  EIS      N   I    K D  
Sbjct: 66  EDIFMSSIKAQVDLALDMSDVIIFLTDGIKGVSSNDLEISNYLRKSNKKIILAVNKFDSK 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKI 358
                 YD           ISS  G G+ +L++++
Sbjct: 126 DAKNNYYDFFELGLGTPITISSEQGSGVGDLLDEV 160


>gi|229822882|ref|ZP_04448952.1| hypothetical protein GCWU000282_00172 [Catonella morbi ATCC 51271]
 gi|229787695|gb|EEP23809.1| hypothetical protein GCWU000282_00172 [Catonella morbi ATCC 51271]
          Length = 437

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 30/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + SH           +  K   +G  N GKSSL NA+ K++  IV++I GTTR+ 
Sbjct: 154 DLLDAVVSHFPTDLAEAEEEDVIKFCFIGRPNVGKSSLVNAILKEERVIVSNIEGTTREA 213

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK-- 311
           +     D EG    + DTAGIR+   +    EK  + R    +E +D++ L+ +  +   
Sbjct: 214 VDTHFTDEEGTRYTMIDTAGIRKRGKVYENTEKYSVLRAMSAIERSDIVCLVLDAETGIR 273

Query: 312 ------KEISFPKNIDFIFIGTKSD-------LYSTYTEEY-----------DHLISSFT 347
                    ++      + +  K D       L+ T+T+E               +S+ T
Sbjct: 274 EQDKKVAGYAYEAGKGMVILVNKWDAVDKSDKLFETFTKEIRAHFQYLTFAPILFVSAHT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPS 375
           G+ L +L   +K+I  N+ +++  S+ +
Sbjct: 334 GQRLNKLPELLKTIYDNRHRRIQSSVLN 361



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 17/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN L  + ++IV D PG TRD +       G   ++ DT GI   D
Sbjct: 6   VALVGRPNVGKSTIFNRLVGERLSIVEDYPGVTRDRIYATGKWLGREFRVIDTGGIDMID 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTKSDLYS 333
           + +  +   +  + +E AD+I+ L  +     ++ + I+      N   +    K+D   
Sbjct: 66  EPLMDQVRYQADIAMEEADVIVFLTSMQEGLTDADEAIAHRLHRTNKPVVLAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                YD           IS   G GL +L++ + S       +   
Sbjct: 126 MRQMVYDFYALGHGDPYPISGSHGTGLGDLLDAVVSHFPTDLAEAEE 172


>gi|262280930|ref|ZP_06058713.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257830|gb|EEY76565.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 469

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 110/283 (38%), Gaps = 20/283 (7%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 73  EQSKTAINEADIIIFVVDARAGLLASDEQIARELRTL-GKKVYLVANKVDGVHAEAALVE 131

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
              L   E   V     + V   +  +  D+    +  +  +    G ++ I+G  N GK
Sbjct: 132 FYKLGMGEPLQVAASHGRGVQQMLEDVLVDVPEDENPEEHDKAT--GLRLAIIGRPNVGK 189

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGI 289
           S+L N L  +D  +  D PGTTRD + I  + +G    + DTAG+R     D+++EK  I
Sbjct: 190 STLVNRLLGEDRVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVRRKGKVDEMIEKFSI 249

Query: 290 KRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEEYDH 341
            +T   +++A +I+++ +      ++++     +       +    K D  + Y  +   
Sbjct: 250 VKTLQAIKDAHVIVVVLDAREGVVEQDLHLIGYALEAGRAMVIAINKWDNMTEYDRKQCK 309

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           L      + +      + S L        +          HL 
Sbjct: 310 LDVDRRFDFIPWAKVHLISALHGTGVGEMYPTIHRAYDSSHLK 352



 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E +
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGENE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
             ++    +++   +  AD+I+ + +  +    S  +              +  K D
Sbjct: 65  GGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKVYLVANKVD 121


>gi|325268712|ref|ZP_08135341.1| ribosome-associated GTPase EngA [Prevotella multiformis DSM 16608]
 gi|324988956|gb|EGC20910.1| ribosome-associated GTPase EngA [Prevotella multiformis DSM 16608]
          Length = 437

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 11/161 (6%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +       + ++  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G
Sbjct: 163 LKDAPDETVDQDIPRFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYNKFG 222

Query: 267 YLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------IS 315
           +   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E        + 
Sbjct: 223 FDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRSIENSDVCILMLDATRGIEAQDMNIFQLI 282

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
              N   + +  K DL     ++      +   + +   ++
Sbjct: 283 QRNNKSLVVVVNKWDLVEDKNQKVIDTFENAIRKRMAPFVD 323



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 9/118 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
           DDI E    K+  +  E ADL+L L +  +           I     +  + +  K D
Sbjct: 65  DDIFEDAIRKQVLVATEEADLVLFLVDTETGVTDWDEDVAMILRRTKLPVLLVANKVD 122


>gi|153939462|ref|YP_001391817.1| GTP-binding protein EngA [Clostridium botulinum F str. Langeland]
 gi|166224329|sp|A7GGA7|DER_CLOBL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|152935358|gb|ABS40856.1| ribosome-associated GTPase EngA [Clostridium botulinum F str.
           Langeland]
 gi|295319842|gb|ADG00220.1| ribosome-associated GTPase EngA [Clostridium botulinum F str.
           230613]
          Length = 439

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 97/258 (37%), Gaps = 29/258 (11%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  M  +        ++K+  ++    A   ++         S      +  + + +  +
Sbjct: 104 VAQMLRKSKKPVVLVVNKIDKLKDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEY 163

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
               +          I  +G  N GKSSL N L  ++  IV+DIPGTTRD +   +D E 
Sbjct: 164 FKDDESDGEDDERINIAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTEF 223

Query: 267 YLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----- 318
               + DTAG+R      + +E+  + RT+  +E AD+ +L+ +          K     
Sbjct: 224 GEFTLIDTAGLRRKSKVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQKIIGYA 283

Query: 319 ---NIDFIFIGTKSDLYSTYTEEYDH------------------LISSFTGEGLEELINK 357
              N   + I  K DL     +  D                    IS+ TG+ + +++  
Sbjct: 284 HDINKAILVIVNKWDLVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQRIVKVLQT 343

Query: 358 IKSILSNKFKKLPFSIPS 375
            K    N  K++   + +
Sbjct: 344 AKECYDNYTKRVKTGVLN 361



 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D PG TRD +  + +   Y   + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           +DI+  +  ++  + +E A++I+ L +       + +E++          + +  K D  
Sbjct: 66  EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADEEVAQMLRKSKKPVVLVVNKIDKL 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
                 Y+            SS    GL ++++++    
Sbjct: 126 KDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEYF 164


>gi|307564580|ref|ZP_07627120.1| ribosome-associated GTPase EngA [Prevotella amnii CRIS 21A-A]
 gi|307346738|gb|EFN92035.1| ribosome-associated GTPase EngA [Prevotella amnii CRIS 21A-A]
          Length = 437

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 11/170 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   ++  +  E+  +  +  ++G  NAGKSSL N+   ++  IVT+I GTTRD 
Sbjct: 154 DLLDILLEKMTDVQEEEVDDDIPRFAVVGRPNAGKSSLINSFIGEERNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYNKFGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRSIENSDVCILMIDATRGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  +    N   + +  K DL     ++      +     +   ++
Sbjct: 274 QDMNIFQLIQRNNKSLVVVVNKWDLVQDKNQKVIDTFVNAIRCRMAPFVD 323



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L K   AIV+D+ GTTRD         G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTKTRHAIVSDVAGTTRDRQYGKCLWNGREFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E    ++  +  E AD++L L +  +           I    N+  + +  K D  
Sbjct: 65  DDIFEDAIRQQVLVATEEADIVLFLVDTETGITDWDEDVALILRRTNLPVLLVANKVDNM 124

Query: 333 STY---------TEEYDHLISSFTGEGLEELINKIKSILSN-KFKKLPFSIP 374
             Y                IS+ TG G  +L++ +   +++ + +++   IP
Sbjct: 125 GEYYTSAEFYKLGLGDPICISAQTGSGTGDLLDILLEKMTDVQEEEVDDDIP 176


>gi|320539280|ref|ZP_08038950.1| ribosome-associated GTPase [Serratia symbiotica str. Tucson]
 gi|320030672|gb|EFW12681.1| ribosome-associated GTPase [Serratia symbiotica str. Tucson]
          Length = 495

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 27/182 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 208 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRK 267

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 268 HGKVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDRDLSLLGFILNSGRSLVIVVNK 327

Query: 329 SDLYSTYTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S                       H IS+  G G+  L   +    +    ++  S
Sbjct: 328 WDGMSEEERTHVKEMLDLRLGFVDFARVHFISALHGSGVGNLFESVLEAYACATHRVNTS 387

Query: 373 IP 374
           + 
Sbjct: 388 ML 389



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG    I DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTQTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGGIDGHE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTK----- 328
           D VE     ++ L +E AD++L + +       + + I+     +      +  K     
Sbjct: 65  DGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRNRQKATFLVVNKTDGLD 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKI 358
                +D YS    E  + I++  G G+ +LI  +
Sbjct: 125 PDVVTADFYSLGLGEV-YAIAASHGRGVRQLIEHV 158


>gi|170725905|ref|YP_001759931.1| GTP-binding protein EngA [Shewanella woodyi ATCC 51908]
 gi|238688689|sp|B1KLB1|DER_SHEWM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169811252|gb|ACA85836.1| small GTP-binding protein [Shewanella woodyi ATCC 51908]
          Length = 488

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            K+ ++G  N GKS+L N +  ++  +V D PGTTRD + I ++ +G    + DTAG+R 
Sbjct: 200 IKLAVIGKPNVGKSTLTNRILGEERVVVYDAPGTTRDSIYIPMERDGREYVLIDTAGVRR 259

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTK 328
             + ++ VEK  + +T   VE+ +++LL+ +     +++++     +       +    K
Sbjct: 260 RSKVNETVEKFSVIKTLKAVEDCNVVLLIVDAREGIAEQDLGLLGFALNAGRALVIAVNK 319

Query: 329 S-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 D+      E D           H IS+  G G+  L   ++    +  +++  S
Sbjct: 320 WDGIDQDIKDRVKSELDRRLGFIDFARIHFISALHGTGVGHLFESVQEAYESATRRVSTS 379

Query: 373 IPSH 376
           + + 
Sbjct: 380 MLTR 383



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 8/129 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADYPGLTRDRKYGRAHLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + +E    +++   +E AD++L L +  +          E    +      +  K D   
Sbjct: 65  EGIETHMAEQSMAAIEEADVVLFLTDARAGLTAADQAISEHLRRREKTTFVVANKVDGID 124

Query: 334 TYTEEYDHL 342
             +   +  
Sbjct: 125 ADSACAEFW 133


>gi|254423770|ref|ZP_05037488.1| GTPase, putative [Synechococcus sp. PCC 7335]
 gi|196191259|gb|EDX86223.1| GTPase, putative [Synechococcus sp. PCC 7335]
          Length = 449

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 95/211 (45%), Gaps = 34/211 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  H+      E +   Y++ I+G  N GKSS+ NA   ++ +IV+ I GTTRD 
Sbjct: 139 ELLDALVEHLPPADQIETVDE-YRVAIVGRPNVGKSSILNAFVGENRSIVSPISGTTRDA 197

Query: 258 LTIDLDLEG----YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEI-- 308
           + + +           ++ DTAGIR+  ++    E  GI R F  ++ AD++LL+ +   
Sbjct: 198 IDMVVTRGDGDDQKRYRLIDTAGIRKKKNVDFGPEYFGINRAFKAIKRADVVLLVIDALD 257

Query: 309 -NSKKEISFP-----KNIDFIFIGTKSDLYSTYTE---EYDH---------------LIS 344
             ++++         +    + +  K D     +    E+D                 +S
Sbjct: 258 GVTEQDQKLAGRIEEEGRACVIVVNKWDAIDKDSHTIYEFDKKIEAKIHFLGWAKRLYVS 317

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           + TG+ L ++++ +   +S   +++  S+ +
Sbjct: 318 ALTGQRLPKILDAVDMAVSEHRRRVSTSVVN 348



 Score = 67.2 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 47/148 (31%), Gaps = 19/148 (12%)

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTF 293
           L N  A    +IV D PG TRD        +       DT G+   DD        ++  
Sbjct: 2   LVNRFAGGRQSIVFDQPGVTRDRTYQPAFWKDREFLAVDTGGLVFDDDTEFLPYIREQAM 61

Query: 294 LEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLYSTYTEEYDHLI-- 343
             +  A   L + +         +EI+     +NI  +    K +       +       
Sbjct: 62  TALSEAAAALFVVDGQIGPTEGDQEIASWMRSQNIPVVLAVNKCESPDEGIIQAAQFWEL 121

Query: 344 --------SSFTGEGLEELINKIKSILS 363
                   S+  G G  EL++ +   L 
Sbjct: 122 GLGEPYAVSAIHGSGTGELLDALVEHLP 149


>gi|293604545|ref|ZP_06686950.1| GTP-binding protein EngA [Achromobacter piechaudii ATCC 43553]
 gi|292817126|gb|EFF76202.1| GTP-binding protein EngA [Achromobacter piechaudii ATCC 43553]
          Length = 454

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 121/328 (36%), Gaps = 41/328 (12%)

Query: 89  IAVVNGILEELAKMPNLRLANPGEFS----RRAFENGKIDLLEAESLADLISSETEMQRR 144
               +GIL E+A+     +A           RA  N          +A L+    + +  
Sbjct: 64  PVAKDGILLEMARQTRQAIAEADVVVFLVDARAGLN-----AHDHEIAQLLRKSGQQRVL 118

Query: 145 LSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS 204
           L++    G           +L   + +  +        D+   + K++       +    
Sbjct: 119 LAVNKAEGMGLGPAISEFHELGLGQPYPISAAHGDGIVDLIELALKDLAEPPAEAEP--- 175

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
               +G+      +  K+ I+G  N GKS+L N L  ++  I  D+PGTTRD + ID D 
Sbjct: 176 --FEEGEGDLEHDHRIKLAIVGRPNVGKSTLINTLMGEERVIAFDLPGTTRDAIEIDFDR 233

Query: 265 EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KE 313
           +G    + DTAG+R+   +    EK  + +T   +E ++++LL+ + +++          
Sbjct: 234 DGRRYTLIDTAGLRKRGKVFEAVEKFSVIKTLQAIEASNVVLLMLDAHTEISEQDAHIAG 293

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINK 357
                    +    K D      +E                  H IS+  G+G++ L+  
Sbjct: 294 FVLETGRAVVVAINKWDGLDGEEKERIEREFQRKLRFLSFARVHTISALRGQGIKPLLKS 353

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           I S  +  F KL     + +       Q
Sbjct: 354 INSAHAAAFAKLSTPKLTRELQAAIEQQ 381



 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 20/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+LFN L +   A+V D  G TRD    +  +        DT G     
Sbjct: 7   VALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYGEGRVGEIPFIAIDTGGFEPVA 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---------KKEISFPKNIDFIFIGTKSD- 330
            D +  E  ++T   +  AD+++ L +  +          + +        +    K++ 
Sbjct: 67  KDGILLEMARQTRQAIAEADVVVFLVDARAGLNAHDHEIAQLLRKSGQQRVLLAVNKAEG 126

Query: 331 --LYSTYTE------EYDHLISSFTGEGLEELIN-KIKSILSNKFKKLPF 371
             L    +E         + IS+  G+G+ +LI   +K +     +  PF
Sbjct: 127 MGLGPAISEFHELGLGQPYPISAAHGDGIVDLIELALKDLAEPPAEAEPF 176


>gi|332663276|ref|YP_004446064.1| GTP-binding protein engA [Haliscomenobacter hydrossis DSM 1100]
 gi|332332090|gb|AEE49191.1| GTP-binding protein engA [Haliscomenobacter hydrossis DSM 1100]
          Length = 434

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 12/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + ++ H+S  +  +   +  +  I+G  N GKSSL NAL  +D  IVT+I GTTRD 
Sbjct: 154 EILDAVADHLSDDEQPKED-SLPRFAIVGQPNVGKSSLTNALLGEDRNIVTEIAGTTRDS 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +            + DTAGIR+   +    E   + R    +E+ D+ +L+ +  +  E 
Sbjct: 213 IDALYTKFDKEFILVDTAGIRKKAKVHENLEFYSVLRAIKAIEDCDVCILMIDAQTGVES 272

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTE 337
                  ++  +N   + +  K DL    T 
Sbjct: 273 QDQAIFRLAQRRNKGIVILVNKWDLVEKSTN 303



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L  +  +IV +I G TRD         G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRLIGERQSIVDNISGVTRDRQYGASYWNGKNFTVVDTGGFVPHS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DD+ E    ++  + V+ A +I+ L ++ +           +          +  K D  
Sbjct: 65  DDVFEAAIREQVKIAVDEASVIIFLVDVTTGITDLDEEVANLLRRSKKPVFLVVNKVDNG 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               E  +            S+ TG G  E+++ +   LS+  +    S+P
Sbjct: 125 QRLFEANEFWSLGFENTLFLSALTGSGSGEILDAVADHLSDDEQPKEDSLP 175


>gi|237747713|ref|ZP_04578193.1| GTP-binding protein engA [Oxalobacter formigenes OXCC13]
 gi|229379075|gb|EEO29166.1| GTP-binding protein engA [Oxalobacter formigenes OXCC13]
          Length = 446

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 35/215 (16%)

Query: 207 ISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           +S  +  + I +G    K+ I+G  N GKS++ NAL  ++  I  D+PGTTRD + I  +
Sbjct: 166 LSPAETEDEIESGQKHIKLAIVGRPNVGKSTMINALLGEERVIAFDLPGTTRDAIEIPFE 225

Query: 264 LEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------K 312
            +G    + DTAG+R+   +    EK  + +T   +  A+++LLL +             
Sbjct: 226 RDGKQYTLVDTAGLRKRGKVFQAIEKFSVVKTLQAISEANVVLLLMDAQQDISEQDAHIA 285

Query: 313 EISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELIN 356
                     +    K D       +                  H +S+    G+  L+ 
Sbjct: 286 GFVLESGRALVVGINKWDGLDQDKRKEIKSEVERKLHFLSFAKFHYVSALKSTGISALMR 345

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            I S  +    KL        R    L + V + +
Sbjct: 346 SIDSAYAAAMAKLSTP-----RLTRVLEEAVEHQQ 375



 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 85/217 (39%), Gaps = 24/217 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRAALVADYPGLTRDRHYGEGRMGDRPFLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTK---- 328
            + V +E  K+T   V  AD+++ + +          +  +         I    K    
Sbjct: 65  KEGVMQEMAKQTKQAVAEADVVIFIVDGRQGITPHDKAITDYLRKSGRPVILAVNKAEGM 124

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                 +D Y         +ISS  G+G+  L+++   ++     +    I S ++H+  
Sbjct: 125 KYTAVVADFYELGLGSDPLVISSAHGDGVHTLLDEALKMVPLSPAETEDEIESGQKHIKL 184

Query: 383 LSQTVRYLEMASLNEKDCGLD-IIAENL----RLASV 414
                  +  +++     G + +IA +L    R A  
Sbjct: 185 AIVGRPNVGKSTMINALLGEERVIAFDLPGTTRDAIE 221


>gi|256425494|ref|YP_003126147.1| small GTP-binding protein [Chitinophaga pinensis DSM 2588]
 gi|256040402|gb|ACU63946.1| small GTP-binding protein [Chitinophaga pinensis DSM 2588]
          Length = 441

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 15/187 (8%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG-- 219
           ++K+ +    +EA   +S   +   F S    +    L ++I+  I +            
Sbjct: 119 VNKVDNATRQLEATEFYSLGFEKVFFMSSMSGSGSGELLDEITGQIPEDDETREAIEAAE 178

Query: 220 --YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              KI I+G  N GKSSL NAL  ++  IV+DIPGTTRD +     +      + DTAG+
Sbjct: 179 ALPKIAIIGQPNVGKSSLLNALIGEERNIVSDIPGTTRDTIHTHYKMFQKDFVLIDTAGL 238

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIG 326
           R  + +    E   + R    ++ AD+ LLL +     + +++S       K    + + 
Sbjct: 239 RRKNKVQEDLEFYSVIRAIKAMDEADVCLLLLDATKGVTAQDLSIFSLAGRKGKGLVVLV 298

Query: 327 TKSDLYS 333
            K DL  
Sbjct: 299 NKWDLIE 305



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 11/192 (5%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G+ + I+G  N GKS+LFN L ++  AIV D+ G TRD      D  G    + DT G +
Sbjct: 3   GFTVAIVGRPNVGKSTLFNRLLEQRKAIVDDVSGVTRDRQYGVADWNGKSFNVIDTGGFV 62

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             ++D+ E+E  K+  + +E A+L+L + ++ +          +I    +   I +  K 
Sbjct: 63  SRSEDVFEREIRKQVKIAMEEANLLLFMCDVATGITDLDAEMADILRRSSKPVILVVNKV 122

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           D  +   E  +     F  E +  + +   S       ++   IP        +      
Sbjct: 123 DNATRQLEATEFYSLGF--EKVFFMSSMSGSGSGELLDEITGQIPEDDETREAIEAAEAL 180

Query: 390 LEMASLNEKDCG 401
            ++A + + + G
Sbjct: 181 PKIAIIGQPNVG 192


>gi|256828007|ref|YP_003156735.1| small GTP-binding protein [Desulfomicrobium baculatum DSM 4028]
 gi|256577183|gb|ACU88319.1| small GTP-binding protein [Desulfomicrobium baculatum DSM 4028]
          Length = 445

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 94/231 (40%), Gaps = 14/231 (6%)

Query: 118 FENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           F+  +  +  A+ +  ++   T +  +   +     +        ++K+           
Sbjct: 76  FDQAREAMAGADLILFIVDGRTGLHPQDEQVGQYLRQSGKEVRVLVNKVDGPEQEETLAA 135

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHI--SQGKLGEIIRNGYKIVILGHSNAGKSS 234
           DF          S      +  L+  I + +   + +  E  + G KI +LG  NAGKSS
Sbjct: 136 DFYSLGFPLQCVSASHGFGMGDLREMIETALPKDECENVEQPQGGLKIALLGRPNAGKSS 195

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKR 291
             NAL  K   +V+   GTTRD + + +   G      DTAG+R      D +E   +  
Sbjct: 196 TINALLGKKRLMVSAEAGTTRDCVDVTVQRGGKTYTFVDTAGVRRKSKVIDSLEYFSVVH 255

Query: 292 TFLEVENADLILLLKEI------NSKKEISFP--KNIDFIFIGTKSDLYST 334
           +    + AD+++L+ +I        K+ +SF   + + F+ +  K DL S 
Sbjct: 256 SMQAAKQADVVVLVLDIMDGVVGQDKRLLSFLDTEKVPFVIVVNKIDLLSK 306



 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + ++G  N GKS+LFN L K+ V+I  D+ G TRD +  ++  E     + DT G+  ++
Sbjct: 8   VALIGRPNVGKSTLFNRLIKRRVSITHDMAGVTRDSIFSEVRGETRTYMLIDTGGLVPDS 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD-- 330
            D +E     +    +  ADLIL + +  +          +       +   +  K D  
Sbjct: 68  SDEIEISIFDQAREAMAGADLILFIVDGRTGLHPQDEQVGQYLRQSGKEVRVLVNKVDGP 127

Query: 331 ------LYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNK 365
                     Y+  +    +S+  G G+ +L   I++ L   
Sbjct: 128 EQEETLAADFYSLGFPLQCVSASHGFGMGDLREMIETALPKD 169


>gi|160890563|ref|ZP_02071566.1| hypothetical protein BACUNI_03006 [Bacteroides uniformis ATCC 8492]
 gi|270295703|ref|ZP_06201903.1| ribosome-associated GTPase EngA [Bacteroides sp. D20]
 gi|317479893|ref|ZP_07939009.1| ribosome-associated GTPase EngA [Bacteroides sp. 4_1_36]
 gi|156859562|gb|EDO52993.1| hypothetical protein BACUNI_03006 [Bacteroides uniformis ATCC 8492]
 gi|270273107|gb|EFA18969.1| ribosome-associated GTPase EngA [Bacteroides sp. D20]
 gi|316903940|gb|EFV25778.1| ribosome-associated GTPase EngA [Bacteroides sp. 4_1_36]
          Length = 437

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKTEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
             +DDI E+E  K+  + V+ AD+IL + ++             I        + +  K+
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDEQVAAILRRAKKPVLLVANKT 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D   L     E Y       + IS+ TG G  ++++ I S    +  ++
Sbjct: 122 DNHELQYNAPEFYSLGLGDPYCISAVTGSGTGDMMDLIVSKFKKESDEI 170



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 88/205 (42%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I S   +     +  +  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DMMDLIVSKFKKESDEILDEDIPRFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR+ + +    E   + R+   +ENAD+ +L+ +     E 
Sbjct: 214 IYTRYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENADVCILMVDATRGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDL-------------------YSTYTEEYDHLISSFT 347
                  +        + +  K DL                   ++ + +      S+ T
Sbjct: 274 QDLNIFSLIQKNAKGLVVVVNKWDLVKDKTVKVMKTFEDAIRNRFAPFVDFPIIFASALT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + +++ + + +  N+  ++P +
Sbjct: 334 KQRILKVLEEARDVYENRMTRIPTA 358


>gi|123441422|ref|YP_001005409.1| GTP-binding protein EngA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166225934|sp|A1JKS6|DER_YERE8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|122088383|emb|CAL11174.1| putative GTP-binding protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 494

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 207 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRK 266

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+++++LL+ +     S +++S            +    K
Sbjct: 267 RGKITEAVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNK 326

Query: 329 SDLYSTYTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S                       H IS+  G G+  L   I+       K++  S
Sbjct: 327 WDGMSEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCSTKRVGTS 386

Query: 373 IPSH 376
           + + 
Sbjct: 387 LLTR 390



 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           D VE +   ++ L +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN 356
             T   D         H I++  G G+ +LI 
Sbjct: 125 PDTATADFYSLGLGEVHAIAASHGRGVTQLIE 156


>gi|270667892|ref|ZP_06222479.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
 gi|270316770|gb|EFA28527.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
          Length = 112

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/111 (45%), Positives = 68/111 (61%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+VI G  NAGKSSL NALA ++ AIVTDI GTTRDVL   + ++G  + I DTAG+R+
Sbjct: 1   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRD 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
             D VE+ GI R + E+E AD I+L+ + +  +     K         KSD
Sbjct: 61  ATDEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFIGERKSD 111


>gi|319949180|ref|ZP_08023269.1| GTP-binding protein Der [Dietzia cinnamea P4]
 gi|319437166|gb|EFV92197.1| GTP-binding protein Der [Dietzia cinnamea P4]
          Length = 488

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 94/232 (40%), Gaps = 29/232 (12%)

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ-GKLGEIIRNGYKIVILGHS 228
           + +EA   +    D     S         L ++I   +    ++ E      ++ ++G  
Sbjct: 175 AELEAAEFWGLGLDQPYAISAAHGRGTADLLDEILRQLPSKARMREAADVPRRVALVGKP 234

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVE 285
           N GKSSL N L  +D A+V ++ GTT D +   ++L G   +  DTAG+R         E
Sbjct: 235 NVGKSSLLNKLTGEDRAVVDNVAGTTVDPVDSLVELGGRTWRFVDTAGLRRKVNQAYGHE 294

Query: 286 KEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIG--TKSDLYST--- 334
                RT   +E A++++LL + +        + IS   +     +    K DL      
Sbjct: 295 YYASLRTRGAIEAAEVVVLLLDASEPITEQDLRVISMVADAGRALVIAFNKWDLVDEDRR 354

Query: 335 --YTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               +E D              IS+ TG  L +L+  +++ L +  K++P  
Sbjct: 355 YDLDKEIDRELSRVLSWAHRVNISAKTGRALAKLVPAMETALDSWDKRIPTG 406



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 20/223 (8%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ--GKLGEIIRNGYKIVILGHSNAGKSS 234
           DF         + ++  ND     + +++  +   G + E +     + I+G  N GKS+
Sbjct: 9   DFDLPTGPGEETVEDAWNDDTDW-DAVAAEFADEIGAVTEGVEILPTVAIVGRPNVGKST 67

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N +  +  A+V D+PG TRD ++ +    G    + DT G  +    + +   ++  +
Sbjct: 68  LVNRIIGRREAVVEDVPGVTRDRVSYEALWNGRTFMVQDTGGWEQDAKGMHRSIAQQAEI 127

Query: 295 EVENADLILLLKE----INSKKEI----SFPKNIDFIFIGTKSDLYSTYTEEYDHL---- 342
            +  ADLI+L+ +    I +  E         +   I    K D      E  +      
Sbjct: 128 AMGTADLIVLVCDGTVGITAADETVARSLRRSDTPVILAVNKVDSDKAELEAAEFWGLGL 187

Query: 343 -----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                IS+  G G  +L+++I   L +K +    +    +  L
Sbjct: 188 DQPYAISAAHGRGTADLLDEILRQLPSKARMREAADVPRRVAL 230


>gi|315150548|gb|EFT94564.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0012]
          Length = 436

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 110/287 (38%), Gaps = 50/287 (17%)

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+  + +A+ L   I   +     L++  +         +  + +    +    D     
Sbjct: 92  GREGITDADELVAKILYRSNKPVILAVNKVDNP------EMRNDIYEFYALGLGD----- 140

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
                   S      I  + ++   H       E + +  K  ++G  N GKSSL NA+ 
Sbjct: 141 ----PFPVSGSHGLGIGDVLDEAVKHFPNTSEEEDV-DTIKFSLIGRPNVGKSSLINAIL 195

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
            +D  IV+DI GTTRD +    +  EG    + DTAG+R+   +    EK  + R    +
Sbjct: 196 GEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRGKVYESTEKYSVMRAMRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTE--------- 337
           E +D++L++  +N+++ I          +       I +  K D     T          
Sbjct: 256 ERSDIVLMV--LNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWDTVKKDTNTMRDFEAEI 313

Query: 338 ---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                         +S+ T + L +L   I+++  N+  ++P ++ +
Sbjct: 314 RDEFQYLDYAPIIFVSALTKQRLNKLPELIETVSMNQNLRIPSALLN 360



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLL-------KEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+I+ +        + +    +I +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + Y+           +S   G G+ +++++      N  ++      
Sbjct: 126 MRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHFPNTSEEEDVDTI 175


>gi|262066723|ref|ZP_06026335.1| ribosome-associated GTPase EngA [Fusobacterium periodonticum ATCC
           33693]
 gi|291379522|gb|EFE87040.1| ribosome-associated GTPase EngA [Fusobacterium periodonticum ATCC
           33693]
          Length = 441

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 21/181 (11%)

Query: 178 FSEEEDVQNFS----------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           F +++D+ +F           S E   ++  + + +   I +    E   +  K+ ++G 
Sbjct: 125 FEQQDDIYDFYGLGFEYLVPISGEHKVNLGDMLDIVVEIIGKMDFPEEDEDVLKLAVIGK 184

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIV 284
            NAGKSSL N L+  +  IV+DI GTTRD +   ++ +     I DTAGIR     ++ +
Sbjct: 185 PNAGKSSLVNKLSGSERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRKSKVEESL 244

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           E   + R    ++ AD+ +L+ +              I+  +    I +  K DL     
Sbjct: 245 EYYSVLRALKSIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIVVMNKWDLVENKN 304

Query: 337 E 337
            
Sbjct: 305 N 305



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L    +AIV ++PG TRD L  D +  G    I DT G+    
Sbjct: 5   IAIVGRPNVGKSTLFNNLIGDKIAIVDNLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +         +    I   KN   I    K D  
Sbjct: 65  NDFLMTKIKEQAEVAMNEADVILFVVDGKAGLNPLDDEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             + E+ D +   F G G E L+
Sbjct: 123 -NFFEQQDDIY-DFYGLGFEYLV 143


>gi|222151373|ref|YP_002560529.1| GTP-binding protein EngA [Macrococcus caseolyticus JCSC5402]
 gi|254783159|sp|B9E6L5|DER_MACCJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|222120498|dbj|BAH17833.1| GTP-binding protein EngA [Macrococcus caseolyticus JCSC5402]
          Length = 436

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++ + H  + +  +   +  K  ++G  N GKSSL NA+  ++  IV+ + GTTRD 
Sbjct: 154 DLLDEAAKHFPEQQEEDYDDDVIKFSLIGRPNVGKSSLINAILGEERVIVSPVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +      E     + DTAG+R+   +    E+  + R    +E ++++L++ +       
Sbjct: 214 IDTVYTFENQEYVMIDTAGMRKKGKVYEATERYSVLRALKAIERSNVVLVVIDAEEGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +       + +  K D    
Sbjct: 274 QDKKIAGYAHEAGKAIVIVVNKWDTVEK 301



 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G +N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRANVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIELGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFIGTKSDLYS 333
           +  +++   +  + +E AD+I+ +         E +   ++ F  +   +    K D   
Sbjct: 66  EPFQEQIRAQAEIAIEEADVIIFMVNGRDGITNEDDFVAKLLFKSSKPVVLGVNKIDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK 368
              + Y+           IS   G G+ +L+++       + ++
Sbjct: 126 MRADIYEFYSLGFGEPFPISGSHGLGIGDLLDEAAKHFPEQQEE 169


>gi|124008576|ref|ZP_01693268.1| GTP-binding protein EngA [Microscilla marina ATCC 23134]
 gi|123985950|gb|EAY25807.1| GTP-binding protein EngA [Microscilla marina ATCC 23134]
          Length = 436

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 11/160 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H    +  +      KI I+G  NAGKSSL N L  K+ +IVTDI GTTRD 
Sbjct: 155 DLLDEVVKHFDDVEEEDPYAGIPKIAIVGRPNAGKSSLVNVLTGKERSIVTDIAGTTRDS 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +       G    ++DTAG+R      D +E     R    +E +D+ +++ +     E 
Sbjct: 215 VNTHYKAFGKNFILTDTAGLRRKSRVKDNIEFYSTMRALRSLEASDICIVMVDATRGIEG 274

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
                  ++       + +  K DL    T+  +      
Sbjct: 275 QDVNIIGLADKNGKGIVIMVNKWDLIEKDTKTAEKFRKDI 314



 Score = 96.5 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 76/170 (44%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++  +I+ +  G TRD +    +  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIEQRKSIMDNQSGVTRDRVYGQAEWIGKFFTVIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-INSKKEIS-------FPKNIDFIFIGTKSD-- 330
           +D+ E    ++  + +E + ++L + + I    ++           +   I +  K+D  
Sbjct: 65  EDVFEGAIREQVEIAIEESSVVLFVVDCITGLTDLDKDFANVLRRGSKPVIIVANKADNI 124

Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                    Y    E     IS+ +G G  +L++++     +  ++ P++
Sbjct: 125 EKEYMASEFYQLGLEGDIFPISAQSGSGSGDLLDEVVKHFDDVEEEDPYA 174


>gi|323526574|ref|YP_004228727.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1001]
 gi|323383576|gb|ADX55667.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1001]
          Length = 445

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 5/149 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E   +G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D + +G    + D
Sbjct: 174 EKAAHGIKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERQGKPYTLID 233

Query: 274 TAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
           TAG+R      + +EK  + +T   + +A++++LL +  ++++IS        F+  +  
Sbjct: 234 TAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLD--ARQDISDQDAHIAGFVVEQGR 291

Query: 331 LYSTYTEEYDHLISSFTGEGLEELINKIK 359
                  ++D L S        +L  K+K
Sbjct: 292 ALVVGVNKWDGLDSHVRERTKADLERKLK 320



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D +  E  ++T   VE +D+++ + +  +          +           +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKVIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D           IS+  G+G+ E+IN+   +      +   
Sbjct: 125 KYSAVAADFYELGLGDPRAISAAHGDGVTEMINEALGVAYAGQPEESD 172


>gi|325571137|ref|ZP_08146709.1| ribosome-associated GTPase EngA [Enterococcus casseliflavus ATCC
           12755]
 gi|325156222|gb|EGC68408.1| ribosome-associated GTPase EngA [Enterococcus casseliflavus ATCC
           12755]
          Length = 436

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ++   H +  +  E   +  K  ++G  N GKSSL NA+  ++  IV+DI GTTRD 
Sbjct: 154 DVLDEAVKHFTN-EAEEEDDSIIKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDA 212

Query: 258 LTIDLDLE-GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +      E G    + DTAG+R+   +    EK  + R    +E +D++L++  +N+++ 
Sbjct: 213 IDTHFTSESGQEFTMIDTAGMRKKGKVYESTEKYSVMRAMRAIERSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISS 345
           I          +       I +  K D     T                        +S+
Sbjct: 271 IREQDKRIAGYAHEAGRGIIIVVNKWDTLKKETNTMRDFEEEIRDEFQYLDYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   I+ +  N+  ++P ++ +
Sbjct: 331 VTKQRLNKLPQLIEEVSMNQNMRIPSALLN 360



 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+I+        + + +     + +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIVFITSAREGVTDADELVARLLYKSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + Y+           IS   G G+ +++++     +N+ ++   SI 
Sbjct: 126 MRNDIYEFYGLGLGDPYPISGSHGLGIGDVLDEAVKHFTNEAEEEDDSII 175


>gi|323697490|ref|ZP_08109402.1| ribosome-associated GTPase EngA [Desulfovibrio sp. ND132]
 gi|323457422|gb|EGB13287.1| ribosome-associated GTPase EngA [Desulfovibrio desulfuricans ND132]
          Length = 505

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 100/236 (42%), Gaps = 24/236 (10%)

Query: 118 FENGKIDLLEAESLADLISSET-----EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           FE  +  + EA ++  ++  +      + Q    +      +  L  +     +   + +
Sbjct: 79  FEQAQEAINEANAIVFVVDGKEGLTPLDRQAAEFVRRSGKPVLMLINKV--DGSEFEAHM 136

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHS 228
            A+  F E        S     ++  +++ +   +       +  + +  G ++ +LG  
Sbjct: 137 TAE--FHELGIEFLPVSAAHGYNLHEVRDRVRRFVEDLGIPVEEDDGVEKGLRLTMLGRP 194

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---E 285
           NAGKSS+ NAL  KD  IV+D+ GTTRD + +  +  G      DTAG+R+  +I    E
Sbjct: 195 NAGKSSIINALIGKDRLIVSDVAGTTRDSIDVTFEKGGKRYTFVDTAGVRKRANIQDHLE 254

Query: 286 KEGIKRTFLEVENADLILLLKEIN------SKKEISF--PKNIDFIFIGTKSDLYS 333
           K  + R     + +D+ +L  +I        K+ I F   +   F+ +  K+DL  
Sbjct: 255 KISVIRALKNSKRSDVTVLTIDITLGVGRQDKRLIEFLAKEKTPFMVVVNKADLIP 310



 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 19/148 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + ++G  N GKS+LFN L +K  +I  D+PG TRD +  +  +      + DT G+    
Sbjct: 5   VALVGRPNVGKSTLFNRLLRKSRSITHDLPGVTRDRIYGECIMGETRFDLVDTGGMVLES 64

Query: 278 ---RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIG 326
               E     E E  ++    +  A+ I+ + +             E         + + 
Sbjct: 65  EATPELSKDFEDEIFEQAQEAINEANAIVFVVDGKEGLTPLDRQAAEFVRRSGKPVLMLI 124

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEEL 354
            K D     +E   H+ + F   G+E L
Sbjct: 125 NKVD----GSEFEAHMTAEFHELGIEFL 148


>gi|257873989|ref|ZP_05653642.1| GTP-binding protein engA [Enterococcus casseliflavus EC10]
 gi|257808153|gb|EEV36975.1| GTP-binding protein engA [Enterococcus casseliflavus EC10]
          Length = 436

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ++   H +  +  E   +  K  ++G  N GKSSL NA+  ++  IV+DI GTTRD 
Sbjct: 154 DVLDEAVKHFTN-EAEEEDDSIIKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDA 212

Query: 258 LTIDLDLE-GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +      E G    + DTAG+R+   +    EK  + R    +E +D++L++  +N+++ 
Sbjct: 213 IDTHFTSESGQEFTMIDTAGMRKKGKVYESTEKYSVMRAMRAIERSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISS 345
           I          +       I +  K D     T                        +S+
Sbjct: 271 IREQDKRIAGYAHEAGRGIIIVVNKWDTLKKETNTMRDFEEEIRDEFQYLDYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   I+ +  N+  ++P ++ +
Sbjct: 331 VTKQRLNKLPQLIEEVSMNQNMRIPSALLN 360



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+I+        + + +     + +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIVFITSAREGVTDADELVARLLYKSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             T+ Y+           IS   G G+ +++++     +N+ ++   SI 
Sbjct: 126 MRTDIYEFYGLGLGDPYPISGSHGLGIGDVLDEAVKHFTNEAEEEDDSII 175


>gi|116333425|ref|YP_794952.1| GTP-binding protein EngA [Lactobacillus brevis ATCC 367]
 gi|122269888|sp|Q03SA1|DER_LACBA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|116098772|gb|ABJ63921.1| Predicted GTPase [Lactobacillus brevis ATCC 367]
          Length = 435

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 17/161 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D PG TRD +    +  G   ++ DT GI   D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYSRAEWLGTEFRMIDTGGIDMGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK-------EINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +        + + K  +I +  +   I    K+D   
Sbjct: 66  EPFLTQITQQAEIAIDEADVIVFIVSAPEGITDADEKVAKILYRADKPVILAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
                YD           +S   G GL +L++ +      K
Sbjct: 126 VRESIYDFYSLGFGDPYPVSGVHGLGLGDLLDAVVKEFPEK 166



 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 34/203 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +     + K G    +  +  ++G  N GKSSL NA+  ++  IV++I GTTRD 
Sbjct: 154 DLLDAVVKEFPE-KDGAPKDDSIRFSLIGRPNVGKSSLVNAMLGEERVIVSNIAGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +      +     + DTAGIR+   +    E+  + R    ++++D++L++  +N+++ I
Sbjct: 213 IDTKFVADDTKFTMVDTAGIRKRGKVYENTERYSVMRAMRAIDDSDVVLVV--LNAEEGI 270

Query: 315 ----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSF 346
                     +       I +  K D                       +      +S+ 
Sbjct: 271 REQDKRVAGYAHEAGRGIIILVNKWDTLKKDNHTLTDFQNLIRIEFQYLSYAPIIFVSAK 330

Query: 347 TGEGLEELINKIKSILSNKFKKL 369
           TG+ LE+L   IK +  N  K++
Sbjct: 331 TGQRLEQLPEMIKRVADNHNKRV 353


>gi|91217172|ref|ZP_01254134.1| GTP-binding protein EngA [Psychroflexus torquis ATCC 700755]
 gi|91184772|gb|EAS71153.1| GTP-binding protein EngA [Psychroflexus torquis ATCC 700755]
          Length = 442

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 11/127 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
             ++G  NAGKSS  NAL  +D  IVTDIPGTTRD +       G+  K+ DTAGIR   
Sbjct: 185 FAVVGRPNAGKSSFINALIGEDRYIVTDIPGTTRDSIDTRYTRFGFDFKLVDTAGIRRKA 244

Query: 282 DIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSD 330
            +    E   + R+   +EN+D+ L++ + +   +        ++       + +  K D
Sbjct: 245 KVKEDLEFYSVMRSVRAIENSDVCLIVMDASRGFDSQVQSIFWLAEKNRKGIVILVNKWD 304

Query: 331 LYSTYTE 337
           L    T 
Sbjct: 305 LVKKETN 311



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + ++G  N GKS+LFN + K+  AIV    G TRD      D  G    + DT G +  +
Sbjct: 13  VAVVGRPNVGKSTLFNRMIKRREAIVDSASGVTRDRHYGKSDWNGREFTLIDTGGYVIGS 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           DD+ EKE  K+  L ++ AD+I+ + ++            ++    N   +    K D  
Sbjct: 73  DDVFEKEIDKQVELAIDEADVIIFVVDVITGITPMDEDVSKLLRKINKPVVLCVNKVDSN 132

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKI 358
              T+  +            S+ +G G  EL++ +
Sbjct: 133 KNRTDALEFYNLGLGEYYSISATSGSGTGELLDAV 167


>gi|253682586|ref|ZP_04863383.1| ribosome-associated GTPase EngA [Clostridium botulinum D str. 1873]
 gi|253562298|gb|EES91750.1| ribosome-associated GTPase EngA [Clostridium botulinum D str. 1873]
          Length = 438

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 95/255 (37%), Gaps = 38/255 (14%)

Query: 118 FENGKIDLLEAESLA----DLISSETEMQRRLSM------------EGMSGELSSLYGQW 161
           + N K  +++   +     D+I ++   Q ++++            +    +      Q 
Sbjct: 48  WLNNKFTIIDTGGIEPESEDVIVAQMRRQAQMAIEMADVVLFIVDGKQGLADADREVAQM 107

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF-----------LKNDISSHISQG 210
           + K           +D  + +D         L D +            L +++     + 
Sbjct: 108 LRKANKSIVLAVNKIDRRQLDDNIYEFYNLGLGDPMAISASQGLGLGDLLDEVVDKFPET 167

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              +      +I ++G  N GKSSL N +  ++  IV++IPGTTRD +   ++ E     
Sbjct: 168 NEDDEENEYIRIAMVGRPNVGKSSLINRILGEEKHIVSNIPGTTRDSVDSYIEREEGKFA 227

Query: 271 ISDTAGIRETDDIVEK---EGIKRTFLEVENADLILLLKEINSKKEISFPK--------N 319
           + DTAG+R    I E+       RT   +ENAD+ +L+ +          K        N
Sbjct: 228 LIDTAGLRRKSKIKEQVERYSAVRTIASIENADVCILMLDAEQGIAEQDEKIIGYAHELN 287

Query: 320 IDFIFIGTKSDLYST 334
              I I  K DL   
Sbjct: 288 KAIIVIVNKWDLIEK 302



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D+PG TRD +    +       I DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAQAEWLNNKFTIIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           +D++  +  ++  + +E AD++L + +      ++ +E++      N   +    K D  
Sbjct: 66  EDVIVAQMRRQAQMAIEMADVVLFIVDGKQGLADADREVAQMLRKANKSIVLAVNKIDRR 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
                 Y+            S+  G GL +L++++     
Sbjct: 126 QLDDNIYEFYNLGLGDPMAISASQGLGLGDLLDEVVDKFP 165


>gi|238019393|ref|ZP_04599819.1| hypothetical protein VEIDISOL_01257 [Veillonella dispar ATCC 17748]
 gi|237864092|gb|EEP65382.1| hypothetical protein VEIDISOL_01257 [Veillonella dispar ATCC 17748]
          Length = 444

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 15/176 (8%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            + L ++  L +D   H           +   + ++G  N GKSSL NAL  +D  IV+D
Sbjct: 149 AKNLMNLGDLLDDTVKHFPPVGTNVDDEDTIHVAVIGRPNVGKSSLTNALLGQDRVIVSD 208

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLK 306
           + GTTRD +            + DTAG+R     ++ VE+  I R+   V+ +D+++L+ 
Sbjct: 209 VAGTTRDSIDTYWTHGDQKFVLIDTAGMRRKSKIEEAVERYSIVRSLRSVDRSDIVVLVL 268

Query: 307 EINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           +               ++      I +  K DL     E+ D     FT +  +EL
Sbjct: 269 DAQDGVTEQDKKIAGYAYEAGKGVIIVVNKWDLI----EKDDKTTLRFTEDIYDEL 320



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 20/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFNA+  K ++IV DIPG TRD +  D +       + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65

Query: 282 D---IVEKEGIKRTFLEVENADLILLLKE-----INSKKE---ISFPKNIDFIFIGTKSD 330
           D   ++ K    +  L +E AD+IL + +     + + +E   I        + +  K D
Sbjct: 66  DNSHVIPKMMRLQAELAIEEADVILFVVDGKQGIVPADEEVANILRASGKPVVLVVNKID 125

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELIN 356
             +     Y+            S+     L +L++
Sbjct: 126 SVNQEPNIYEFYNLGLGDPIGISAKNLMNLGDLLD 160


>gi|332162632|ref|YP_004299209.1| GTP-binding protein EngA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606735|emb|CBY28233.1| GTP-binding protein EngA [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666862|gb|ADZ43506.1| GTP-binding protein EngA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859281|emb|CBX69631.1| GTP-binding protein engA [Yersinia enterocolitica W22703]
          Length = 494

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 207 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRK 266

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+++++LL+ +     S +++S            +    K
Sbjct: 267 RGKITEAVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNK 326

Query: 329 SDLYSTYTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S                       H IS+  G G+  L   I+       K++  S
Sbjct: 327 WDGMSEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCSTKRVGTS 386

Query: 373 IPSH 376
           + + 
Sbjct: 387 LLTR 390



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           D VE +   ++ L +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN 356
             T   D         H I++  G G+ +LI 
Sbjct: 125 PDTATADFYSLGLGEVHAIAASHGRGVTQLIE 156


>gi|167747191|ref|ZP_02419318.1| hypothetical protein ANACAC_01905 [Anaerostipes caccae DSM 14662]
 gi|317473608|ref|ZP_07932897.1| ribosome-associated GTPase EngA [Anaerostipes sp. 3_2_56FAA]
 gi|167654151|gb|EDR98280.1| hypothetical protein ANACAC_01905 [Anaerostipes caccae DSM 14662]
 gi|316898898|gb|EFV20923.1| ribosome-associated GTPase EngA [Anaerostipes sp. 3_2_56FAA]
          Length = 440

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 15/168 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  +     L E      KI I+G  NAGKSS+ N +  ++  IV+D+ GTTRD 
Sbjct: 156 DLLDEVVENCDPKALEEEEDERPKIAIIGKPNAGKSSIINKMLGEERVIVSDVAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +   G      DTAG+R  + I    E+  + RT   VE  D+ +L+ +       
Sbjct: 216 IDTVIQKNGKEYVFIDTAGLRRKNKIKEDLERYSVIRTVSAVERCDVAVLVIDATEGITE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
                  I+  +    I    K DL     E+ D  I  FT +  E L
Sbjct: 276 QDAKIAGIAHERGKGMIIAVNKWDLV----EKDDKTIYKFTNKIREVL 319



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA ++++IV D PG TRD +  D+    Y   + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGENISIVKDTPGVTRDRIYADISWLNYNFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D++     ++  + +E AD+I+ L ++            ++        +    K+D Y
Sbjct: 66  GDVILSRMREQAQIAIETADVIIFLVDVRQGLVDADFQVADMLRRSQKPVVLAVNKADNY 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +  +            H +S+ +  G  +L++++      K  +    
Sbjct: 126 EKFLPDTYEFYNLGLGDPHPVSANSKLGFGDLLDEVVENCDPKALEEEED 175


>gi|169348409|ref|ZP_02866347.1| hypothetical protein CLOSPI_00124 [Clostridium spiroforme DSM 1552]
 gi|169293878|gb|EDS76011.1| hypothetical protein CLOSPI_00124 [Clostridium spiroforme DSM 1552]
          Length = 434

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 87/207 (42%), Gaps = 30/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++   +      E   +  +  I+G  N GKSSL N++  ++  IV++I GTTRD 
Sbjct: 153 DLLDEVIKKLD-FTEEEFAEDEIRFSIIGRPNVGKSSLTNSILGEERVIVSNIEGTTRDA 211

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE-----IN 309
           +    + +G   ++ DTAG+R+   I    EK  + R    +E +D+I+++ +     I 
Sbjct: 212 IDTVFEKDGQKYRVIDTAGMRKKGKIYENVEKYSVLRALSSIEKSDVIVVVIDGERGVIE 271

Query: 310 SKKEI---SFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
             K +   +       I +  K DL     +                       +S+ T 
Sbjct: 272 QDKHVAGYAHEAGKGVILVVNKWDLVEKDEKTMQKKEKELRSQFKYLDYARIIFLSAKTH 331

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + + +L   I+    N  K++  S+ +
Sbjct: 332 QRVHQLFPLIQESFENSHKRVQTSVLN 358



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G +N GKS++FN +  + ++IV DI G TRD +           ++ DT GI   D
Sbjct: 5   VAIVGRANVGKSTIFNRIVGERISIVEDIAGVTRDRIYATASWLTKEFRLIDTGGIELKD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
                +   +  + +E ADLI+ +      +  + E    +        +    K D  +
Sbjct: 65  ASFTTQIKMQAEIAIEEADLIIFVVNGREGVTQEDEYVARLLQKNKKPILLAVNKIDDGA 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK 368
              + YD           +S   G G+ +L++++   L    ++
Sbjct: 125 FINDIYDFYSLGIGDPIPVSGSHGIGIGDLLDEVIKKLDFTEEE 168


>gi|22125256|ref|NP_668679.1| GTP-binding protein EngA [Yersinia pestis KIM 10]
 gi|45442513|ref|NP_994052.1| GTP-binding protein EngA [Yersinia pestis biovar Microtus str.
           91001]
 gi|108808309|ref|YP_652225.1| GTP-binding protein EngA [Yersinia pestis Antiqua]
 gi|108811426|ref|YP_647193.1| GTP-binding protein EngA [Yersinia pestis Nepal516]
 gi|145599492|ref|YP_001163568.1| GTP-binding protein EngA [Yersinia pestis Pestoides F]
 gi|149365335|ref|ZP_01887370.1| putative GTP-binding protein [Yersinia pestis CA88-4125]
 gi|153948065|ref|YP_001400171.1| GTP-binding protein EngA [Yersinia pseudotuberculosis IP 31758]
 gi|162419655|ref|YP_001605020.1| GTP-binding protein EngA [Yersinia pestis Angola]
 gi|165925991|ref|ZP_02221823.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937070|ref|ZP_02225635.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008076|ref|ZP_02228974.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212264|ref|ZP_02238299.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398998|ref|ZP_02304522.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421200|ref|ZP_02312953.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423353|ref|ZP_02315106.1| GTP-binding protein EngA [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170023543|ref|YP_001720048.1| GTP-binding protein EngA [Yersinia pseudotuberculosis YPIII]
 gi|218929935|ref|YP_002347810.1| GTP-binding protein EngA [Yersinia pestis CO92]
 gi|229838454|ref|ZP_04458613.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895156|ref|ZP_04510332.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Yersinia pestis
           Pestoides A]
 gi|229899021|ref|ZP_04514165.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901683|ref|ZP_04516805.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Yersinia pestis
           Nepal516]
 gi|270489878|ref|ZP_06206952.1| ribosome-associated GTPase EngA [Yersinia pestis KIM D27]
 gi|294504563|ref|YP_003568625.1| GTP-binding protein EngA [Yersinia pestis Z176003]
 gi|26006726|sp|Q8ZCT9|DER_YERPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123246587|sp|Q1CK87|DER_YERPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123372277|sp|Q1C5J2|DER_YERPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225935|sp|A4TMT3|DER_YERPP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166920105|sp|A7FFZ3|DER_YERP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238687331|sp|A9R7Z8|DER_YERPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238688573|sp|B1JSA4|DER_YERPY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|21958127|gb|AAM84930.1|AE013738_7 putative GTP-binding factor [Yersinia pestis KIM 10]
 gi|45437378|gb|AAS62929.1| putative GTP-binding protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775074|gb|ABG17593.1| GTP-binding protein [Yersinia pestis Nepal516]
 gi|108780222|gb|ABG14280.1| putative GTP-binding protein [Yersinia pestis Antiqua]
 gi|115348546|emb|CAL21486.1| putative GTP-binding protein [Yersinia pestis CO92]
 gi|145211188|gb|ABP40595.1| GTP-binding protein [Yersinia pestis Pestoides F]
 gi|149291748|gb|EDM41822.1| putative GTP-binding protein [Yersinia pestis CA88-4125]
 gi|152959560|gb|ABS47021.1| GTP-binding protein EngA [Yersinia pseudotuberculosis IP 31758]
 gi|162352470|gb|ABX86418.1| GTP-binding protein EngA [Yersinia pestis Angola]
 gi|165914933|gb|EDR33545.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922195|gb|EDR39372.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992458|gb|EDR44759.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206195|gb|EDR50675.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960689|gb|EDR56710.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051502|gb|EDR62910.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057523|gb|EDR67269.1| GTP-binding protein EngA [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750077|gb|ACA67595.1| small GTP-binding protein [Yersinia pseudotuberculosis YPIII]
 gi|229681612|gb|EEO77706.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Yersinia pestis
           Nepal516]
 gi|229687966|gb|EEO80038.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694820|gb|EEO84867.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701918|gb|EEO89941.1| 50S ribosome associated factor involved in the biogenesis and
           stability of 50S ribosomal subunits [Yersinia pestis
           Pestoides A]
 gi|262362442|gb|ACY59163.1| GTP-binding protein EngA [Yersinia pestis D106004]
 gi|262366551|gb|ACY63108.1| GTP-binding protein EngA [Yersinia pestis D182038]
 gi|270338382|gb|EFA49159.1| ribosome-associated GTPase EngA [Yersinia pestis KIM D27]
 gi|294355022|gb|ADE65363.1| GTP-binding protein EngA [Yersinia pestis Z176003]
 gi|320016011|gb|ADV99582.1| ferrous iron transport protein B [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 495

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 208 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDDREYILIDTAGVRK 267

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+++++LL+ +     S +++S            +    K
Sbjct: 268 RGKITETVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNK 327

Query: 329 SDLYSTYTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  +                       H IS+  G G+  L   ++       K++  S
Sbjct: 328 WDGMTEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESVQEAYDCSTKRVGTS 387

Query: 373 IPSH 376
           + + 
Sbjct: 388 LLTR 391



 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 17/184 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           D VE +   ++ L +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             T   D         H I++  G G+ +LI  + +   +  +         +   Y   
Sbjct: 125 PDTATADFYSLGLGEVHAIAASHGRGVTQLIEDVMAPYMDAEEPEVELTEEEENAAYWAE 184

Query: 385 QTVR 388
           Q  +
Sbjct: 185 QEAQ 188


>gi|328950011|ref|YP_004367346.1| GTP-binding protein engA [Marinithermus hydrothermalis DSM 14884]
 gi|328450335|gb|AEB11236.1| GTP-binding protein engA [Marinithermus hydrothermalis DSM 14884]
          Length = 431

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 26/220 (11%)

Query: 191 EVLNDILFLKNDISSHIS--QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           E    +  L + I   +   Q +  E      ++ I+G  NAGKSSL NA+  ++  IV+
Sbjct: 144 EHRRGLDALVDAIWERLPVRQDEDAEPEVEALRLAIIGRPNAGKSSLMNAILGEERVIVS 203

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLLKE 307
           + PGTTRD + ++ D  G    + DTAGIR+  +  VE   I+R+   +  AD+++L+ +
Sbjct: 204 EQPGTTRDAIDVEFDYGGQRFVLVDTAGIRKRPETAVEYFAIQRSHRVIREADVVVLVVD 263

Query: 308 INSKKE-------ISFPKNIDFIFIGTKSD---------LYSTYTEEYDH-------LIS 344
                +        +       I   +K D         + +   E+  H         S
Sbjct: 264 PFELGDRELKMANEALEAGRPTILAVSKWDRVPKDEARRVRAEIREKLAHLERLPLIYTS 323

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           + TG+ L +L+++   +      +   S  +    ++ + 
Sbjct: 324 AVTGQNLHKLLSEAVRLYHLARTRFETSELNRWLDVWLMR 363



 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 79/198 (39%), Gaps = 31/198 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+VI+G  N GKSSL+N L  +  A+V D PG TRD+    ++ +    K+ DT G+  +
Sbjct: 3   KVVIVGRPNVGKSSLYNRLLGRRDAVVADEPGVTRDLKEAVIETDRGRFKLVDTGGL-WS 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD-- 330
            D  E +  ++    +++ADL+L L +  +          +    +    + + TK D  
Sbjct: 62  GDAWEPKIQEKVDRAIQDADLVLFLVDGRADPTQADFEVADYLRRQPTPVLLVATKVDDP 121

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                L   Y   +      S     GL+ L++ I   L               R     
Sbjct: 122 KHEQYLGELYALGFGAPIPTSVEHRRGLDALVDAIWERLP-------------VRQDEDA 168

Query: 384 SQTVRYLEMASLNEKDCG 401
              V  L +A +   + G
Sbjct: 169 EPEVEALRLAIIGRPNAG 186


>gi|299783191|gb|ADJ41189.1| GTP-binding protein engA [Lactobacillus fermentum CECT 5716]
          Length = 370

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + +AIV D PG TRD L    +  G    + DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGIEMSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK-------EINSK-KEISFPKNIDFIFIGTKSDLYS 333
             +  +  ++  + +E AD+I+++        + + +  +I +  N   +    K D   
Sbjct: 66  QPLLTQIRQQAEIAIEEADVIIMVVNVENGVTDADEQVAQILYRSNKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
              + YD            SS  G GL ++++ +      K  +    
Sbjct: 126 RRLDVYDFYQLGLGEPYPVSSVHGVGLGDMLDAVIENFVEKDAEEEDD 173



 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 88/212 (41%), Gaps = 37/212 (17%)

Query: 199 LKNDISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           L + + + I     K  E   +  +   +G  N GKSSL NA+  ++  IV+D+ GTTRD
Sbjct: 152 LGDMLDAVIENFVEKDAEEEDDRIRFSFIGRPNVGKSSLVNAILGENRVIVSDMAGTTRD 211

Query: 257 VLTIDLD-LEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKK 312
            +       +G    + DTAGI++   +    E+  + R+   ++++D++L++  +N+++
Sbjct: 212 AINTQFTAKDGREFTMVDTAGIKKKGKLYENTERYALMRSMRAIDDSDVVLVV--LNAEE 269

Query: 313 EI----------SFPKNIDFIFIGTKSDLYSTYTEE-------------------YDHLI 343
            I          +       I +  K D      +                        +
Sbjct: 270 GIRELDKHIAGYAHEAGRAVIIVVNKWDTIPDRDQRTMTDFTNLIRHEFQYLSYAPIVFV 329

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           S+ T + L  L   I+    ++ +++  ++ +
Sbjct: 330 SAKTKQRLSRLPEMIEEAYDHQHRRIQSAVLN 361


>gi|223043265|ref|ZP_03613312.1| ribosome-associated GTPase EngA [Staphylococcus capitis SK14]
 gi|222443476|gb|EEE49574.1| ribosome-associated GTPase EngA [Staphylococcus capitis SK14]
          Length = 436

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 65/148 (43%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  +  +        +  ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD 
Sbjct: 154 DLLDAVVENFGEETEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   EG    + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 VDTEYSYEGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVIIDAEQGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEEGKAIVIVVNKWDTVEK 301



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + ++ AD+I+ +  +            ++ +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVLLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK 368
              + YD           IS   G GL +L++ +      + + 
Sbjct: 126 MRNDIYDFYSLGFGDPYPISGSHGLGLGDLLDAVVENFGEETED 169


>gi|218128437|ref|ZP_03457241.1| hypothetical protein BACEGG_00005 [Bacteroides eggerthii DSM 20697]
 gi|317475737|ref|ZP_07934996.1| ribosome-associated GTPase EngA [Bacteroides eggerthii 1_2_48FAA]
 gi|217989328|gb|EEC55641.1| hypothetical protein BACEGG_00005 [Bacteroides eggerthii DSM 20697]
 gi|316908120|gb|EFV29815.1| ribosome-associated GTPase EngA [Bacteroides eggerthii 1_2_48FAA]
          Length = 437

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +DDI E+E  K+  + V+ AD+IL + ++ +           I        + +  K+
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDLQVASILRRAKKPVLLVANKT 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D   L     E Y       + IS+ TG G  +L++ I      +  ++
Sbjct: 122 DNNELQYNAPEFYSLGLGDPYCISAVTGSGTGDLMDLIVENFKKESDEI 170



 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 31/225 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I  +  +     +  +  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DLMDLIVENFKKESDEILDEDIPRFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR+ + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENSDVCILMLDATRGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL--SN 364
                  +    +   + +  K DL               T + ++   N I+S      
Sbjct: 274 QDLNIFSLIQKNSKGLVVVVNKWDLVED-----------KTVKVMKTFENAIRSRFAPFV 322

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEM-------ASLNEKDCGL 402
            F  +  S  + +R L  L +     E        A LNE+   L
Sbjct: 323 DFPIIFASALTKQRILKVLEEARTVYENRMIRIPTARLNEEMLPL 367


>gi|261820577|ref|YP_003258683.1| GTP-binding protein EngA [Pectobacterium wasabiae WPP163]
 gi|261604590|gb|ACX87076.1| ribosome-associated GTPase EngA [Pectobacterium wasabiae WPP163]
          Length = 495

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 208 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYILIDTAGVRK 267

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A+++LL+ +     S +++S            + +  K
Sbjct: 268 RGKVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 327

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S    +                  H IS+  G G+  L   +    S   +++  +
Sbjct: 328 WDGLSQEVRDQVKDMLDLRLGFIDFARIHFISALHGSGVGNLFESVMEAYSCATRRVSTA 387

Query: 373 IPSH 376
           + + 
Sbjct: 388 MLTR 391



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 23/204 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTK----- 328
           D VE     ++ + +E AD++L + +       + + I+     +    + +  K     
Sbjct: 65  DGVETRMAGQSLVAIEEADIVLFMVDARAGLMPADEGIAKHLRSREKMTVLVANKTDGLD 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                +D YS    E  + I++  G G+  L+  +         + P  +   + +  + 
Sbjct: 125 PDMVTADFYSLGMGEV-YAIAASHGRGVTSLLETVLLPFVQDEIEEPVELTEEEENAAY- 182

Query: 384 SQTVRYLEMASLNEKD---CGLDI 404
              +   E AS  E +      D+
Sbjct: 183 WAALEAKEQASEEEAEDDFNPEDL 206


>gi|86142085|ref|ZP_01060609.1| GTP-binding protein EngA [Leeuwenhoekiella blandensis MED217]
 gi|85831648|gb|EAQ50104.1| GTP-binding protein EngA [Leeuwenhoekiella blandensis MED217]
          Length = 433

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 12/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   + + K+ E      +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD 
Sbjct: 153 DLLDAVVEVLPE-KVEEEESVLPRFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDA 211

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR    +    E   + R+   +E+ D+ LL+ +     + 
Sbjct: 212 IDTKYNRFGFEFNLVDTAGIRRKSKVKEDLEFYSVMRSVRAIEHCDVCLLVVDATRGFDG 271

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTE 337
                  ++       + +  K DL     +
Sbjct: 272 QVQNIFWLAERNRKGIVILINKWDLVEKENK 302



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      D  G    + DT G +R +
Sbjct: 4   VAIVGRPNVGKSTFFNRLIQRREAIVDSVSGVTRDRHYGKTDWNGKEFSVIDTGGYVRGS 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E++  K+  L ++ AD I+ + ++ +           +   ++     +  K D  
Sbjct: 64  DDIFEEQIDKQVELAIDEADAIIFMVDVEAGVTGMDEDVATLLRRQSKPVFLVVNKVDNA 123

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               +  +            +S +G G  +L++ +  +L  K ++    +P
Sbjct: 124 MRQDDAVEFYNLGLGEYYTIASISGSGTGDLLDAVVEVLPEKVEEEESVLP 174


>gi|269837313|ref|YP_003319541.1| small GTP-binding protein [Sphaerobacter thermophilus DSM 20745]
 gi|269786576|gb|ACZ38719.1| small GTP-binding protein [Sphaerobacter thermophilus DSM 20745]
          Length = 445

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 30/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I +H+ +    E       I I+G  N GKS+L NAL  +   IV+ IPGTTRD 
Sbjct: 161 DLLDAIIAHLPETTEAER-EEVPSIAIVGRPNVGKSALLNALLGQSRQIVSSIPGTTRDA 219

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++   G  V + DTAGIR    I   +EK  + R+   VE AD+ +L+ +       
Sbjct: 220 VDTEITWAGNRVVLVDTAGIRRPGRIERGIEKYSVLRSTRAVERADVAVLVIDATEPFTA 279

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                           I    K DL                      +      IS+ TG
Sbjct: 280 QDQAIAGAIAEAKKGIIVAVNKWDLVEKDHRTMKEFTEKAREAFHFISYAPIVFISALTG 339

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSH 376
           + + +++    +I + + +++P    + 
Sbjct: 340 QRVNQVMELALAIFAERQRRIPTGELNR 367



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 74/177 (41%), Gaps = 24/177 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + I+G  N GKS+LFN L  +  AIV D+PGTTRD +  +    G    + DT G+    
Sbjct: 6   VAIVGRPNTGKSTLFNRLVGERRAIVEDLPGTTRDRIYAEASWGGVTFDVVDTGGLLSEQ 65

Query: 278 ---RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
              R +   + +   ++  L +E AD+I+ + +  +          ++        +   
Sbjct: 66  EIERASAAEIAQATQEQAELAIEQADVIVFMVDGQAGVTAGDHEVADLIRRAKRPVLLAV 125

Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            K++  +      +           IS+  G G+ +L++ I + L    +     +P
Sbjct: 126 NKAEARNIQDAAVEFYELGLGDPYPISALHGTGVGDLLDAIIAHLPETTEAEREEVP 182


>gi|224025980|ref|ZP_03644346.1| hypothetical protein BACCOPRO_02731 [Bacteroides coprophilus DSM
           18228]
 gi|224019216|gb|EEF77214.1| hypothetical protein BACCOPRO_02731 [Bacteroides coprophilus DSM
           18228]
          Length = 437

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWLGKEFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
             +DD+ E+E  K+  L VE AD+IL + ++             I        I +  K+
Sbjct: 62  VNSDDVFEEEIRKQVLLAVEEADVILFVVDVMNGVTDLDAQVAGILRRSKTPVILVANKT 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D   L     E Y         IS+ +G G  +L++ + S      ++ 
Sbjct: 122 DSNELQYNAAEFYSLGLGDPFCISAMSGSGTGDLLDLVLSKFRKNVEET 170



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 85/205 (41%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + S   +     +  +  +  ++G  NAGKSS+ NA   ++  IVTDI GTTRD 
Sbjct: 154 DLLDLVLSKFRKNVEETVEEDIPRFAVVGRPNAGKSSIINAFIGEERNIVTDIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    D  G+   + DTAGIR+ + +    E   + R+   +E +D+ +L+ +     E 
Sbjct: 214 IYTRYDKFGFDFYLVDTAGIRKKNKVSEDLEYYSVIRSIRAIEGSDVCILMLDATRGVEG 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYST-------------------YTEEYDHLISSFT 347
                  +        + +  K DL                      +T+      S+ T
Sbjct: 274 QDLNIFSLIQRNQKGLVVVVNKWDLVEDKSAKVMKTFEEAIRNRLAPFTDFPIIFASALT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + +++   K +   K K++P +
Sbjct: 334 KQRIFKVLETAKEVYLAKTKRIPTA 358


>gi|199598702|ref|ZP_03212116.1| GTP-binding protein EngA [Lactobacillus rhamnosus HN001]
 gi|229552181|ref|ZP_04440906.1| GTP-binding protein EngA [Lactobacillus rhamnosus LMS2-1]
 gi|258508385|ref|YP_003171136.1| GTP-binding protein EngA [Lactobacillus rhamnosus GG]
 gi|258539596|ref|YP_003174095.1| GTP-binding protein EngA [Lactobacillus rhamnosus Lc 705]
 gi|199590390|gb|EDY98482.1| GTP-binding protein EngA [Lactobacillus rhamnosus HN001]
 gi|229314483|gb|EEN80456.1| GTP-binding protein EngA [Lactobacillus rhamnosus LMS2-1]
 gi|257148312|emb|CAR87285.1| GTP-binding protein EngA [Lactobacillus rhamnosus GG]
 gi|257151272|emb|CAR90244.1| GTP-binding protein EngA [Lactobacillus rhamnosus Lc 705]
 gi|259649699|dbj|BAI41861.1| GTP-binding protein EngA [Lactobacillus rhamnosus GG]
          Length = 435

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   LAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGKSEWLGKEFAVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+IL L  I +          +I +  N   +    K D   
Sbjct: 66  EPFLAQIKDQAEIAIDEADVILFLTSIEAGVTDADERVAQILYRANKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD            S   G GL ++++ + +   N+         
Sbjct: 126 RRQDIYDFYSLGFGEPLPLSGTHGIGLGDVLDAVLAAFPNEASADEDDSI 175



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 87/214 (40%), Gaps = 35/214 (16%)

Query: 195 DILFLKNDISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
             + L + + + ++    +      +  K  ++G  N GKSSL NA+  ++  IV+ I G
Sbjct: 148 HGIGLGDVLDAVLAAFPNEASADEDDSIKFSLIGRPNVGKSSLVNAILGENRVIVSPIEG 207

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN 309
           TTRD +    + +G    + DTAGIR+   +    EK  + R    ++ +D++L +  IN
Sbjct: 208 TTRDAIDTKFEADGETFTMIDTAGIRKRGKVYENTEKYAVMRALRAIDRSDVVLFV--IN 265

Query: 310 SKKEI----------SFPKNIDFIFIGTKSDLYSTYTE------------------EYDH 341
           +++ I          +       I +  K D                             
Sbjct: 266 AEEGIREQDKKVAGYAHEAGRGIIIVVNKWDTLEKDNRTMKDFENLIRQEFQYLDYAPII 325

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            +S+ T + L+ L   I  +  N+ +++  S+ +
Sbjct: 326 FVSAKTHQRLQSLPAMIVEVSENQTRRIQSSVLN 359


>gi|163786085|ref|ZP_02180533.1| GTP-binding protein EngA [Flavobacteriales bacterium ALC-1]
 gi|159877945|gb|EDP72001.1| GTP-binding protein EngA [Flavobacteriales bacterium ALC-1]
          Length = 434

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 11/128 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  ++  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDTKYNRFGFEFNLVDTAGIRRK 235

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
             +    E   + R+   +E+ D+ LL+ +     +        ++       + +  K 
Sbjct: 236 SKVKEDLEFYSVMRSVRAIEHCDVCLLVLDATRGFDGQVQNIFWLAERNRKGIVILVNKW 295

Query: 330 DLYSTYTE 337
           DL    T+
Sbjct: 296 DLIEKETK 303



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + ++G  N GKS+ FN L K+  AIV  + G TRD      D  G    + DT G +  +
Sbjct: 5   VAVVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGKEFSLIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E E  K+  L ++ AD I+ + ++ +           +          +  K D  
Sbjct: 65  DDIFEAEIDKQVELAIDEADAIIFMVDVETGITGMDEDVANLLRKVKKPVFLVVNKVDNN 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               +  +           I+S  G G  +L++ +   L  K +     +P
Sbjct: 125 KRAEDAVEFYSLGLGDYFTIASINGSGTGDLLDAVVDALPEKEEVEEEELP 175


>gi|257876568|ref|ZP_05656221.1| GTP-binding protein engA [Enterococcus casseliflavus EC20]
 gi|257810734|gb|EEV39554.1| GTP-binding protein engA [Enterococcus casseliflavus EC20]
          Length = 436

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ++   H +  +  E   +  K  ++G  N GKSSL NA+  ++  IV+DI GTTRD 
Sbjct: 154 DVLDEAVKHFTN-EAEEEDDSIIKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDA 212

Query: 258 LTIDLDLE-GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +      E G    + DTAG+R+   I    EK  + R    +E +D++L++  +N+++ 
Sbjct: 213 IDTHFTSESGQEFTMIDTAGMRKKGKIYESTEKYSVMRAMRAIERSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISS 345
           I          +       I +  K D     T                        +S+
Sbjct: 271 IREQDKRIAGYAHEAGRGIIIVVNKWDTLKKETNTMRDFEEEIRDEFQYLDYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   I+ +  N+  ++P ++ +
Sbjct: 331 VTKQRLNKLPQLIEEVSMNQNMRIPSALLN 360



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+I+        + + +     + +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIVFITSAREGVTDADELVARLLYKSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             T+ Y+           IS   G G+ +++++     +N+ ++   SI 
Sbjct: 126 MRTDIYEFYGLGLGDPYPISGSHGLGIGDVLDEAVKHFTNEAEEEDDSII 175


>gi|332703981|ref|ZP_08424069.1| GTP-binding protein engA [Desulfovibrio africanus str. Walvis Bay]
 gi|332554130|gb|EGJ51174.1| GTP-binding protein engA [Desulfovibrio africanus str. Walvis Bay]
          Length = 443

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/305 (22%), Positives = 117/305 (38%), Gaps = 61/305 (20%)

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA------------ 174
           + E +   I +    Q R +++   G L  L     + LT +   + A            
Sbjct: 65  QVEDIQAAIFA----QAREAVKESHGIL--LVMDGREGLTALDERVAAFIRTSNKPVLLA 118

Query: 175 --DLDFSEEEDVQNFSS-----------KEVLNDILFLKNDISS-HISQGKLGEII--RN 218
              +D SE  D+                    + I  L+  I+   ++     E +    
Sbjct: 119 VNKIDGSENADLMLAEFHGLGFPLLAVSASHGHGITTLREQIADFLLADVPEEEDLTAEQ 178

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +I  LG  NAGKSSL N+L   D  IV+ + GTTRD + +  ++EG      DTAG+R
Sbjct: 179 GLRIAFLGKPNAGKSSLVNSLTGSDRVIVSPVAGTTRDSVDVTFEVEGKRYTFVDTAGVR 238

Query: 279 ET---DDIVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNIDFIFIG--T 327
           +    +D +E+  + R     + A + +L+ +  +      KK +SF +     FI    
Sbjct: 239 KRTKIEDNLEQFSVLRALKASKKAQITVLVLDAQAGMTTQDKKLLSFLEKEKTPFIAVIN 298

Query: 328 KSDLYST---------YTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
           K DL            Y +E            S+ TG G+ EL+   + +L     ++  
Sbjct: 299 KMDLVPRDERKVAREHYKKELSIASYAPVTFTSAMTGVGVAELLPMAERLLEECRIRIGT 358

Query: 372 SIPSH 376
              + 
Sbjct: 359 GALNR 363



 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L +++ AI  D PG TRD +  + DL G  V   DT G+   +
Sbjct: 5   VAIIGRPNVGKSTLFNRLLRREAAITHDRPGVTRDRIYAETDLGGRKVAFVDTGGLEMEE 64

Query: 282 DIVEKE--GIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDL 331
            + + +     +    V+ +  ILL+ +          +        N   +    K D 
Sbjct: 65  QVEDIQAAIFAQAREAVKESHGILLVMDGREGLTALDERVAAFIRTSNKPVLLAVNKIDG 124

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                                S+  G G+  L  +I   L     +   
Sbjct: 125 SENADLMLAEFHGLGFPLLAVSASHGHGITTLREQIADFLLADVPEEED 173


>gi|257869556|ref|ZP_05649209.1| GTP-binding protein engA [Enterococcus gallinarum EG2]
 gi|257803720|gb|EEV32542.1| GTP-binding protein engA [Enterococcus gallinarum EG2]
          Length = 436

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
            K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      E G    + DTAG+R
Sbjct: 175 IKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSENGQEFTMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           +   +    EK  + R    +E +D++L++  +N+++ I          +       I +
Sbjct: 235 KKGKVYESTEKYSVMRAMRAIERSDVVLMV--LNAEEGIREQDKRIAGYAHEAGRGIILV 292

Query: 326 GTKSDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K DL    T                        +S+ T + L +L   I+ +  N+  
Sbjct: 293 VNKWDLLKKETNTMRDFEAEIRDEFQYLDYAPIIFVSAATKQRLNQLPALIEEVSMNQNM 352

Query: 368 KLPFSIPS 375
           ++P ++ +
Sbjct: 353 RIPSALLN 360



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSIIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+I+        + + +     + +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIVFITSAREGVTDADELVARLLYKSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + Y+           IS   G G+ +++++     + + ++   SI 
Sbjct: 126 MRADIYEFYTLGLGDPYPISGSHGLGIGDVLDEAVKHFTEEAEEEDESII 175


>gi|238758839|ref|ZP_04620012.1| GTP-binding protein engA [Yersinia aldovae ATCC 35236]
 gi|238702947|gb|EEP95491.1| GTP-binding protein engA [Yersinia aldovae ATCC 35236]
          Length = 494

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 207 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRK 266

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+++++LL+ +     S +++S            +    K
Sbjct: 267 RGKITETVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNK 326

Query: 329 SDLYSTYTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  +                       H IS+  G G+  L   I+       K++  S
Sbjct: 327 WDGMTEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCSTKRVGTS 386

Query: 373 IPSH 376
           + + 
Sbjct: 387 MLTR 390



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           D VE +   ++ L +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN 356
             T   D         H I++  G G+ +LI 
Sbjct: 125 PDTATADFYSLGLGDVHAIAASHGRGVTQLIE 156


>gi|85059734|ref|YP_455436.1| GTP-binding protein EngA [Sodalis glossinidius str. 'morsitans']
 gi|123519082|sp|Q2NS44|DER_SODGM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|84780254|dbj|BAE75031.1| putative GTP-binding protein [Sodalis glossinidius str.
           'morsitans']
          Length = 488

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 201 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRK 260

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A+++LL+ +     S +++S            +    K
Sbjct: 261 RGKVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIAVNK 320

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S+ T +                  H IS+  G G+  L   +        K++  +
Sbjct: 321 WDGLSSETRDEVKEALDHRLGFIDFARVHFISALHGSGVGNLFESVNEAYQCATKRVSTA 380

Query: 373 IPSH 376
           + + 
Sbjct: 381 LLTR 384



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 18/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      + EG+   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYCRAEWEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + VE     ++ + +E AD++L + +       + K I+     +    + +  K+D   
Sbjct: 65  EGVETRMAGQSLVAIEEADIVLFMVDGRAGLMAADKGIARHLRSREKTTVIVANKTDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINK-IKSILSNKFKKLPFSIPSH 376
             +   D           I++  G G+  L+ + +  ++S+   +        
Sbjct: 125 ADSAVGDFYSLGMGEIVPIAASHGRGINSLLEQVLLPLVSDGLAEAEDEFAPW 177


>gi|238788166|ref|ZP_04631961.1| GTP-binding protein engA [Yersinia frederiksenii ATCC 33641]
 gi|238723753|gb|EEQ15398.1| GTP-binding protein engA [Yersinia frederiksenii ATCC 33641]
          Length = 494

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 207 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRK 266

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+++++LL+ +     S +++S            +    K
Sbjct: 267 RGKITEAVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNK 326

Query: 329 SDLYSTYTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S                       H IS+  G G+  L   I+       K++  S
Sbjct: 327 WDGMSEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCSTKRVGTS 386

Query: 373 IPSH 376
           + + 
Sbjct: 387 LLTR 390



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           D VE +   ++ L +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN 356
             T   D         H I++  G G+ +LI 
Sbjct: 125 PDTATADFYSLGLGEVHAIAASHGRGVTQLIE 156


>gi|332982413|ref|YP_004463854.1| ribosome-associated GTPase EngA [Mahella australiensis 50-1 BON]
 gi|332700091|gb|AEE97032.1| ribosome-associated GTPase EngA [Mahella australiensis 50-1 BON]
          Length = 437

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L  + ++IV D PG TRD +  D++  G +  + DT GI    
Sbjct: 6   VAIIGRPNVGKSTLFNRLVGRRISIVDDTPGITRDRIYADVEWTGKIFSLVDTGGIDFSG 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D +  + I++    ++ AD+ILL+ + N           +I    N   + +  K D +
Sbjct: 66  KDSIVNQMIRQAQYAIDTADVILLVVDANEGMTSADEEVADILRRSNKSVLLVCNKVDNF 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
           +     YD           IS+  G G+ +L++KI + ++
Sbjct: 126 NRKDLLYDFYKLGLGDPIPISAGNGLGIGDLLDKIVAHIN 165



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 12/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I +HI+   +  I     +I ++G  NAGKSS+ N L  ++  IV+D PGTTRD 
Sbjct: 155 DLLDKIVAHINVS-VDIIDEETIRIAVIGKPNAGKSSIVNRLLGQERVIVSDQPGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI------ 308
           + + ++ EG    + DTAG+R     ++ VE+  + R    V+ +D+  L+ +       
Sbjct: 214 IDVLIEHEGDRYILIDTAGLRRKAKINEAVERYSVSRALEAVQRSDVAALVIDAVEGVTE 273

Query: 309 -NSK-KEISFPKNIDFIFIGTKSDLYST 334
            ++K    +  K    I +  K DL   
Sbjct: 274 QDAKIAGFAHEKGKGLIVLLNKWDLIEK 301


>gi|260662130|ref|ZP_05863026.1| ribosome-associated GTPase EngA [Lactobacillus fermentum 28-3-CHN]
 gi|260553513|gb|EEX26405.1| ribosome-associated GTPase EngA [Lactobacillus fermentum 28-3-CHN]
          Length = 437

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 17/156 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + +AIV D PG TRD L    +  G    + DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGIEMSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK-------EINSK-KEISFPKNIDFIFIGTKSDLYS 333
             +  +  ++  + +E AD+I+++        + + +  +I +  N   +    K D   
Sbjct: 66  QPLLTQIRQQAEIAIEEADVIIMVVNVENGVTDADEQVAQILYRSNKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKS 360
              + YD            SS  G GL ++++ +  
Sbjct: 126 RRLDVYDFYQLGLGEPYPVSSVHGVGLGDMLDAVIE 161



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 80/189 (42%), Gaps = 35/189 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIR 278
            +   +G  N GKSSL NA+  ++  IV+D+ GTTRD +       +G    + DTAGI+
Sbjct: 175 IRFSFIGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINTQFTAKDGREFTMVDTAGIK 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           +   +    E+  + R+   ++N+D++L++  +N+++ I          +       I +
Sbjct: 235 KKGKLYENTERYALMRSMRAIDNSDVVLVV--LNAEEGIRELDKHIAGYAHEAGRAVIIV 292

Query: 326 GTKSDLYSTYTEE-------------------YDHLISSFTGEGLEELINKIKSILSNKF 366
             K D      +                        +S+ T + L  L   I+    ++ 
Sbjct: 293 VNKWDTIPDRDQRTMTDFTNLIRHEFQYLSYAPIVFVSAKTKQRLSRLPEMIEEAYDHQH 352

Query: 367 KKLPFSIPS 375
           +++  ++ +
Sbjct: 353 RRIQSAVLN 361


>gi|206901733|ref|YP_002250881.1| ribosome-associated GTPase EngA [Dictyoglomus thermophilum H-6-12]
 gi|206740836|gb|ACI19894.1| ribosome-associated GTPase EngA [Dictyoglomus thermophilum H-6-12]
          Length = 380

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 11/171 (6%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S     ++  L + I S +   +         +   +G  N+GKSSL NAL  KD 
Sbjct: 87  PFPISALHKQNLYELLDLIISLLPPTEESHTEDEFIRFAFVGRPNSGKSSLLNALIGKDR 146

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADL 301
           +IV++IPGTTRD + +  +  G    I DT G+R     ++ +E+  +++T   +   D+
Sbjct: 147 SIVSEIPGTTRDAVDLVWEFNGKKYIIVDTPGLRRPARVEEGLEELSVRKTLQTIRKIDV 206

Query: 302 ILLLKEIN-----SKKEISF---PKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
            +++ +++      +K I      K    + +  K+DL+ +  E  +    
Sbjct: 207 AVMVIDLSVGVREQEKRILHYIEDKGKSCLIVFNKTDLFPSLKERREFEKI 257


>gi|269123837|ref|YP_003306414.1| small GTP-binding protein [Streptobacillus moniliformis DSM 12112]
 gi|268315163|gb|ACZ01537.1| small GTP-binding protein [Streptobacillus moniliformis DSM 12112]
          Length = 438

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 14/167 (8%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           EDV   S++  +N    L   +    +  K  E   +G  I +LG  NAGKSS  N +  
Sbjct: 138 EDVVPISAEHKVNLGDLLDLAVEKFPTVNKEEE---SGLSIAVLGRPNAGKSSFVNKILN 194

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVEN 298
           K+ +IV+DI GTTRD +    + +G    I DTAGIR     +D +E   + R    ++ 
Sbjct: 195 KERSIVSDIAGTTRDSIDSSFNYDGQKYTIIDTAGIRRKSKVEDDIEYYSVLRAVKAIQR 254

Query: 299 ADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTE 337
           A++ +L+ +              + F +    I    K DL     +
Sbjct: 255 ANVCVLMLDATELLTEQDKRIAGLIFEEKKPLIIAINKWDLIEKNNK 301



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L    ++IV D  G TRD L  + +  G    + DT G+   +
Sbjct: 3   VAIVGRPNVGKSTLFNKLIGDRLSIVKDEIGVTRDRLYRETEWSGKKFLLVDTGGLEPRS 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +D +  +   +  + ++ AD I+ L +  +          +I   ++   I    K D  
Sbjct: 63  NDFMMNKIKDQARVAIDEADSIIFLVDGKAGITAIDEDIAKILRKEDKKVIVAVNKID-- 120

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             Y ++ D +   F G G E+++
Sbjct: 121 -NYIKDKDVMY-EFYGLGFEDVV 141


>gi|302345898|ref|YP_003814251.1| ribosome-associated GTPase EngA [Prevotella melaninogenica ATCC
           25845]
 gi|302149910|gb|ADK96172.1| ribosome-associated GTPase EngA [Prevotella melaninogenica ATCC
           25845]
          Length = 437

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 11/170 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  ++       + ++  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DLLDILLENLKDVPEEAVDQDIPRFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +       G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYTKFGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRSIENSDVCILMLDATRGIEA 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  +    N   + +  K DL     ++      +   + +   ++
Sbjct: 274 QDMNIFQLIQRNNKSLVVVVNKWDLVEDKNQKVIDTFENAIRKRMAPFVD 323



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    I DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSIVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E    K+  +  E ADL+L + +  +           I     +  + +  K D  
Sbjct: 65  DDIFEDAIRKQVLVATEEADLVLFVVDTETGITDWDEDVALILRRTKLPVLLVANKVDNS 124

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSILSN 364
             Y +  +           IS+ TG G  +L++ +   L +
Sbjct: 125 GEYYQAAEFYKLGLGEPICISAATGGGTGDLLDILLENLKD 165


>gi|303236880|ref|ZP_07323459.1| ribosome-associated GTPase EngA [Prevotella disiens FB035-09AN]
 gi|302483048|gb|EFL46064.1| ribosome-associated GTPase EngA [Prevotella disiens FB035-09AN]
          Length = 437

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 11/154 (7%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
            I     +  ++G  NAGKSSL NA   +D  IVT+I GTTRD +    +  G+   + D
Sbjct: 170 NIEEEIPRFAVVGRPNAGKSSLINAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVD 229

Query: 274 TAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDF 322
           TAGIR  + +    E   + R+   +EN+D+ +L+ +     E        +    N   
Sbjct: 230 TAGIRRKNKVTEDLEFYSVMRSIRSIENSDVCILMIDATRGIEAQDMNIFQLIQRNNKSL 289

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +  K DL     ++      +   E +   ++
Sbjct: 290 VVVVNKWDLVEDKDQKVIKTFENAIRERMAPFVD 323



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 9/118 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCQWNGREFSIVDTGGWVVNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE--------INSKKEISFPKNIDFIFIGTKSD 330
           DDI E    K+  +  E AD +L L +             +I     +  I +  K D
Sbjct: 65  DDIFEDAIRKQVLVATEEADFVLFLVDNETGITDWDEDVAQILRRSKLPVILVANKVD 122


>gi|330837623|ref|YP_004412264.1| GTP-binding protein engA [Spirochaeta coccoides DSM 17374]
 gi|329749526|gb|AEC02882.1| GTP-binding protein engA [Spirochaeta coccoides DSM 17374]
          Length = 547

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 11/134 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              K+ +LG  N GKS+L N L  ++V+IV+DIPGTTRDV++ D   +G    I DTAGI
Sbjct: 194 ERIKLAVLGKPNTGKSTLTNLLVGQEVSIVSDIPGTTRDVVSGDFLYKGTPFTILDTAGI 253

Query: 278 RET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
           R     D+ VE   + R    ++ ++++LL+ +             ++   +    + + 
Sbjct: 254 RRKSKVDEDVEYYSVNRAIKTIDESNVVLLMIDAQEGIADQDKKIAQLIVRRGKGVVLVL 313

Query: 327 TKSDLYSTYTEEYD 340
            K D  S    + +
Sbjct: 314 NKIDALSGIQNQLE 327



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  K   I    PG TRD ++    L G+ V + DT G++   
Sbjct: 24  IAIVGRPNTGKSTLFNRLVGKRRMITDPTPGVTRDPVSEHWMLGGHSVMLVDTGGVKLDR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISF----PKNIDFIFIGTKSDLYST 334
           + ++    +++   +E A +++LL E   +  + E+      P     + +  K D Y+ 
Sbjct: 84  EGLDHLVSEKSLSILERAHVLILLLECTTLTPEDEMLVKHLRPYGDKTVLVVNKVDDYNR 143

Query: 335 YTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
            T  +++          IS+  G G+ +L + +  +L
Sbjct: 144 ETLVWNYHSLGYQRVVGISAAHGLGIGDLEDTLMGML 180


>gi|167772322|ref|ZP_02444375.1| hypothetical protein ANACOL_03699 [Anaerotruncus colihominis DSM
           17241]
 gi|167665425|gb|EDS09555.1| hypothetical protein ANACOL_03699 [Anaerotruncus colihominis DSM
           17241]
          Length = 442

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 82/191 (42%), Gaps = 29/191 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +   +HI   +  E      K+ ++G  N GKSSL N +A ++ +IV+D+ GTTRD 
Sbjct: 156 DLLDACYAHIDFNRADEYGEEYVKVAVIGKPNVGKSSLVNRVAGEERSIVSDMAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +   ++ E       DTAGIR     ++ +E+  + R ++ V+ +D+ +++ +       
Sbjct: 216 VDTVVENEYGRFVFIDTAGIRRKSRVEEQIERYSVLRAYMAVDRSDVCVIMIDATVGFTE 275

Query: 309 --NSKKEISFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
             +     +  +    I    K D      +                       IS+ TG
Sbjct: 276 QDSKIAGYAHERGKGCIVAVNKWDAIEKDGKTMQTFRKKLETDFSFMSYAPILFISAMTG 335

Query: 349 EGLEELINKIK 359
           + +++L  +I+
Sbjct: 336 QRIDKLFEQIQ 346



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I I+G  N GKS+LFN LA   ++IV D PG TRD +  + +     V + DT GI   +
Sbjct: 6   IAIVGRPNVGKSTLFNKLAGARISIVEDTPGVTRDRVYYECEWRAKTVMLVDTGGIEPYS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332
            D +  +  ++  L +++AD+I+L+ +I S      ++++          +    K D  
Sbjct: 66  TDKILSQMRRQAQLAIDSADVIILVTDIQSGVTATDQDVAVMLQKSGKPVVLAVNKCDRL 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINK 357
                ++             +SS  G G  +L++ 
Sbjct: 126 GDVPPDFYEFYNLGLGDPIAVSSVHGHGTGDLLDA 160


>gi|144898965|emb|CAM75829.1| Small GTP-binding protein domain:GTP-binding [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 470

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 18/158 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN LA + +AIV D+PG TRD       L G   ++ DTAG  +
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLAGRRLAIVHDMPGVTRDRREAAASLLGMEFRVIDTAGFED 62

Query: 280 TDDI-VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             D  +E     +T   V  AD++L+L +  +          +    +    I +  K +
Sbjct: 63  AHDESIEARMRYQTDTAVAEADVVLMLIDARAGVTPLDAHFADYLRKQKTPVILVANKCE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIK 359
             +     Y+            S+  GEGL EL + ++
Sbjct: 123 GKAGAPGMYESYGLGLGEPVPFSAEHGEGLAELFDALR 160



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 85/199 (42%), Gaps = 29/199 (14%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            + +  +      ++VI+G  N GKS+L N L  +D  +     G TRD +++D      
Sbjct: 188 EEIETEDRPERPLQLVIVGRPNVGKSTLVNRLLGQDRMLTGPEAGLTRDAISVDWQHRDR 247

Query: 268 LVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK--- 318
            +++ DTAG+R+    +D VEK     T   +  A++++L+ +   I  K++++  +   
Sbjct: 248 GIRLVDTAGLRKRANIEDPVEKLSASNTLEAIRMAEVVVLVMDSAAILDKQDLTIARMVV 307

Query: 319 --NIDFIFIGTKSDLYSTYTEEYD------------------HLISSFTGEGLEELINKI 358
                 +    K D      E                       IS+ TG G++++++ +
Sbjct: 308 EEGRSLVIAINKWDAVEKPQEALQRLADRLETSLPMVRGLPTVTISALTGRGVDKMMDAV 367

Query: 359 KSILSNKFKKLPFSIPSHK 377
            ++     +++P S  +  
Sbjct: 368 LAVHKTWNRRIPTSQLNRW 386


>gi|147669843|ref|YP_001214661.1| GTP-binding protein EngA [Dehalococcoides sp. BAV1]
 gi|146270791|gb|ABQ17783.1| small GTP-binding protein [Dehalococcoides sp. BAV1]
          Length = 442

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 17/126 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ ++G +N GKS+L N    +D +IV++IPGTTRD +   LD +G  V + DTAGIR 
Sbjct: 181 VKLALVGRTNVGKSTLLNTFLGEDRSIVSNIPGTTRDAIDTPLDFDGTNVLLIDTAGIRR 240

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-----------FIFI 325
              +    EK  + R    ++ AD++LL+ +    +E+   ++              I I
Sbjct: 241 RGKVESGVEKYSVLRALKAIDRADVVLLVMD---TEELVTAQDTHIAGYVRDTAKGIIII 297

Query: 326 GTKSDL 331
             K DL
Sbjct: 298 LNKWDL 303



 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N LA K++AI  D+PGTTRD L   +      + + DT G+  + 
Sbjct: 9   IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFATVSWLDRRLIMVDTGGLDPDI 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           + ++ ++   +  L ++ ADL+LL+ ++            +I        I +  K+D  
Sbjct: 69  ESVIGQQVNIQISLAIKEADLVLLVVDVKDGLITPDYEMADIIRRTGKPVILVANKADNL 128

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
               E  +           IS+F G G+ +L++++   L ++    P 
Sbjct: 129 KMGQEATEFYSLGFGEPAVISAFHGTGISDLMDRVLEELPDQPIATPE 176


>gi|303229883|ref|ZP_07316659.1| ribosome-associated GTPase EngA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515439|gb|EFL57405.1| ribosome-associated GTPase EngA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 444

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 29/212 (13%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            + L ++  L +D   H           +   + I+G  N GKSSL NAL  +D  IV+D
Sbjct: 149 AKNLMNLGDLLDDTVKHFPPVGTNVDEEDTIHVAIIGRPNVGKSSLTNALLGQDRVIVSD 208

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLK 306
           + GTTRD +            + DTAG+R     D+ VE+  I R+   V+ +D+++L+ 
Sbjct: 209 VAGTTRDSIDTHWTHGDQKFVLIDTAGMRRKSKIDEAVERYSIVRSLRSVDRSDIVVLVL 268

Query: 307 E-----INSKKEI---SFPKNIDFIFIGTKSDLYST-------YTEEY-----------D 340
           +         K+I   ++      I +  K DL          YTE+             
Sbjct: 269 DGVDGVTEQDKKIAGYAYEAGKGVIIVVNKWDLVEKDDKTTLRYTEDIYDELGFLQFAPI 328

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              S+ T + +  L + +K +   +++++   
Sbjct: 329 LFASALTKQRIHRLADMLKFVSEQQYRRVSTG 360



 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 20/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + ++G  N GKS+LFNA+  K ++IV DIPG TRD +  D +       + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFVT 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKE---ISFPKNIDFIFIGTKSD 330
           E   ++ K    +  L +E AD+IL + +     + + +E   I        + +  K D
Sbjct: 66  ENSHVIPKMMRLQAELAIEEADVILFVVDGKQGIVPADEEVANILRTSGKPVVLVVNKID 125

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELIN 356
             +     Y+            S+     L +L++
Sbjct: 126 SVNQEPNIYEFYNLGLGDPIGISAKNLMNLGDLLD 160


>gi|288803890|ref|ZP_06409315.1| ribosome-associated GTPase EngA [Prevotella melaninogenica D18]
 gi|288333655|gb|EFC72105.1| ribosome-associated GTPase EngA [Prevotella melaninogenica D18]
          Length = 437

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    I DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSIVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E    K+  +  E ADL+L + +  +           I     +  + +  K D  
Sbjct: 65  DDIFEDAIRKQVLVATEEADLVLFVVDTETGITDWDEDVALILRRTKLPVLLVANKVDNS 124

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSILSN 364
             Y +  +           IS+ TG G  +L++ +   L +
Sbjct: 125 GEYYQAAEFYKLGLGEPICISAATGGGTGDLLDILLENLKD 165



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 11/170 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  ++       + ++  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DLLDILLENLKDVPEEAVDQDIPRFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +       G+   + DTAGIR  + +    E   + R+   +EN+++ +L+ +     E 
Sbjct: 214 IYTRYTKFGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRSIENSEVCILMLDATRGIEA 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  +    N   + +  K DL     ++      +   + +   ++
Sbjct: 274 QDMNIFQLIQRNNKSLVVVVNKWDLVEDKNQKVIDTFENAIRKRMAPFVD 323


>gi|239636852|ref|ZP_04677851.1| ribosome-associated GTPase EngA [Staphylococcus warneri L37603]
 gi|239597526|gb|EEQ80024.1| ribosome-associated GTPase EngA [Staphylococcus warneri L37603]
          Length = 436

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 11/126 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD +  +   +G    + DTAG+R+
Sbjct: 176 IRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSFDGQDYVLIDTAGMRK 235

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              +    EK  + R    +E ++++L++ +               +  +    + +  K
Sbjct: 236 KGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDKRVAGYAHEEGKAIVIVVNK 295

Query: 329 SDLYST 334
            D    
Sbjct: 296 WDTVEK 301



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 17/156 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + +E AD+I+ +  +            ++ +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIEEADVIVFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNVE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKS 360
              + YD           IS   G GL +L++ +  
Sbjct: 126 MRNDIYDFYSLGFGEPYPISGSHGLGLGDLLDAVVE 161


>gi|225010004|ref|ZP_03700476.1| small GTP-binding protein [Flavobacteria bacterium MS024-3C]
 gi|225005483|gb|EEG43433.1| small GTP-binding protein [Flavobacteria bacterium MS024-3C]
          Length = 436

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 11/170 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   + +    +      +  ++G  NAGKSS  NAL  +D  IVTDI GTTRD 
Sbjct: 154 ELLDALVLALPEEVEQKEEEVLPRFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR    +    E   + R+   +E++D+ +L+ +     + 
Sbjct: 214 IDTRYNRFGFEFNLVDTAGIRRKAKVREDLEFYSVMRSVRAIEHSDVCILILDATRGFDG 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                  ++   N   + +  K DL            +    E +   ++
Sbjct: 274 QVENIFWLAQRNNKGIVILVNKWDLVEDKETNTVKAYTQRIQEAISPFVD 323



 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+ FN L ++  AIV  + G TRD      D  G    + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGREFSVIDTGGYVLGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DD+ EKE  K+  L ++ AD I+ + ++ +          ++        +    K D  
Sbjct: 65  DDVFEKEIDKQVELAIDEADAIIFMVDVETGITGMDEDVAKLLRRVKKPVLLAVNKVDNA 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
               E  +            +S +G G  EL++ +   L 
Sbjct: 125 RRIEESVEFYNLGLGDFFTIASISGSGTGELLDALVLALP 164


>gi|332637852|ref|ZP_08416715.1| GTP-binding protein Der [Weissella cibaria KACC 11862]
          Length = 436

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +A   ++IV D PG TRD +    +      ++ DT GI   D
Sbjct: 6   VAVVGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTRAEWLTREFRLIDTGGIDMAD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           +    + +++  + ++ AD+I+ +               +I +      +    K D   
Sbjct: 66  EPFMTQIVQQAEIAIDEADVIVFMVSAQEGLTEADERVAKILYRSKKPVVLAVNKVDNIE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +E Y+           IS   G GL +L++++ S       +      
Sbjct: 126 MRSEIYEFYALGFGDPFPISGSHGTGLGDLLDQVVSHFPETDNEADDDSI 175



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 21/171 (12%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + SH  +    E   +  +   +G  N GKSSL NA+  ++  IV+DI GTTRD 
Sbjct: 154 DLLDQVVSHFPETDN-EADDDSIRFSFIGRPNVGKSSLVNAILGEERVIVSDISGTTRDA 212

Query: 258 LTIDLDL-EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +       +G    + DTAGIR+   +    EK  + R    +++++++L++  +N+++ 
Sbjct: 213 IDTRFTSADGDEFVMVDTAGIRKRGKVYESTEKYSVMRAMRAIDDSNVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           I          +       I +  K D      E+ +H +S F  +  +E 
Sbjct: 271 IREQDKHVAGYAHEAGRAIIIVVNKWD----TLEKDNHTMSDFENQIRDEF 317


>gi|157374575|ref|YP_001473175.1| GTP-binding protein EngA [Shewanella sediminis HAW-EB3]
 gi|189037163|sp|A8FT74|DER_SHESH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157316949|gb|ABV36047.1| small GTP-binding protein [Shewanella sediminis HAW-EB3]
          Length = 488

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I ++ +G    + DTAG+R 
Sbjct: 200 IKMAIIGKPNVGKSTLTNRILGEERVVVYDSPGTTRDSIYIPMERDGREYVMIDTAGVRR 259

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTK 328
             +  + VEK  + +T   VE+ +++LL+ +     +++++     +       +    K
Sbjct: 260 RSKVHETVEKFSVIKTLKAVEDCNVVLLIIDAREGIAEQDLGLLGFALNAGRALVIAVNK 319

Query: 329 S-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 D+      E D           H IS+  G G+  L   ++    +  +++  S
Sbjct: 320 WDGIDQDIKDRVKSELDRRLGFIDFARIHFISALHGTGVGHLFESVQEAYDSATRRVSTS 379

Query: 373 IPSH 376
           + + 
Sbjct: 380 MLTR 383



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 8/129 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
           + +E    +++   +E AD++L L +  +          E    +      +  K D   
Sbjct: 65  EGIETHMAEQSLAAIEEADVVLFLTDARAGLTAADQAICEHLRRREKTTFVVANKVDGID 124

Query: 334 TYTEEYDHL 342
             +   +  
Sbjct: 125 ADSACAEFW 133


>gi|186476174|ref|YP_001857644.1| GTP-binding protein EngA [Burkholderia phymatum STM815]
 gi|238691310|sp|B2JIU7|DER_BURP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|184192633|gb|ACC70598.1| small GTP-binding protein [Burkholderia phymatum STM815]
          Length = 446

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 36/207 (17%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D + +G    + D
Sbjct: 175 EKAQHGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERQGKKYTLID 234

Query: 274 TAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI----- 325
           TAG+R+     + +EK  + +T   + +A++++LL +  ++++IS        F+     
Sbjct: 235 TAGLRKRGKVFEAIEKFSVVKTLQSISDANVVILLLD--ARQDISEQDAHIAGFVVEQGR 292

Query: 326 -----GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSN 364
                  K D    +  E                  H IS+    G+  L+  +      
Sbjct: 293 ALVVGVNKWDGLDPHVRERTKSDLQRKLKFLEFAKFHFISAAEKTGIGPLMRSVDDAYKA 352

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLE 391
              KLP    +       L + V + +
Sbjct: 353 AMSKLPTPKLTR-----ALIEAVEFQQ 374



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRE- 279
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  + G     + DT G    
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGGERPYLVVDTGGFEPV 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDL 331
             D +  E  ++T   VE +D+I+ + +     + ++ S              +  K++ 
Sbjct: 65  AKDGILFEMARQTRQAVEESDVIVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 124

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                   D           IS+  G+G+ E+IN+   +      +   
Sbjct: 125 MKYTNVAADFYELGLGDPRAISAAHGDGVTEMINEALDVAYAGQPEESD 173


>gi|242373782|ref|ZP_04819356.1| GTP-binding protein EngA [Staphylococcus epidermidis M23864:W1]
 gi|242348519|gb|EES40121.1| GTP-binding protein EngA [Staphylococcus epidermidis M23864:W1]
          Length = 436

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  +  +        +  ++ I+G  N GKSSL NA+  ++  IV+++ GTTRD 
Sbjct: 154 DLLDAVVENFGEETEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  +   E     + DTAG+R+   +    EK  + R    +E ++++L++ +       
Sbjct: 214 VDTEYTYEDQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST 334
                   +  +    + +  K D    
Sbjct: 274 QDKRVAGYAHEEGKAIVIVVNKWDTVEK 301



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
              + +   +  + ++ AD+I+ +  +            ++ +      +    K D   
Sbjct: 66  APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK 368
              + YD           IS   G GL +L++ +      + + 
Sbjct: 126 MRNDIYDFYSLGFGDPYPISGSHGLGLGDLLDAVVENFGEETED 169


>gi|124025156|ref|YP_001014272.1| GTP-binding protein EngA [Prochlorococcus marinus str. NATL1A]
 gi|166225837|sp|A2C0J7|DER_PROM1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123960224|gb|ABM75007.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str.
           NATL1A]
          Length = 456

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 15/168 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +      L E+  +  ++ I+G  N GKSSL N++  +  AIV+ I GTTRD 
Sbjct: 156 DLLDQVVNLFPSKDLDEVSDSPVQLAIIGRPNVGKSSLLNSICGETRAIVSSIRGTTRDT 215

Query: 258 LTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI---NSK 311
           +   +  +G   K+ DTAGI   R  +   E  GI R+F  +E +D+ +L+ +     ++
Sbjct: 216 IDTRITHQGKEWKLVDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTE 275

Query: 312 KEISFP-----KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           ++         +    + +  K D      E+  H +S+   +   +L
Sbjct: 276 QDQRLAGRIEQEGRACLIVINKWDAV----EKDSHTMSAMEKDIRSKL 319



 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 19/163 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCQSREAIVHDEPGVTRDRTYQDGFWRDRDFKVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           D     E  ++  L +E A + L++ +          S  E    ++   + +  K +  
Sbjct: 66  DSEFLPEIREQANLALEEAVVALVIVDGQEGITTADESIAEFLRSRSCKTLVVVNKCESP 125

Query: 333 S----------TYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                             + IS+  G G  +L++++ ++  +K
Sbjct: 126 EQGLAMAAEFWKLGLGEPYPISAIHGVGTGDLLDQVVNLFPSK 168


>gi|56461130|ref|YP_156411.1| GTP-binding protein EngA [Idiomarina loihiensis L2TR]
 gi|81821723|sp|Q5QYB3|DER_IDILO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|56180140|gb|AAV82862.1| GTPase EngA [Idiomarina loihiensis L2TR]
          Length = 479

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 20/180 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      + +GY   + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYQFIVIDTGGIHGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + +++E  K++ L V+ AD++L + +             +    +N     +  K D   
Sbjct: 65  EGIDEEMAKQSLLAVDEADVVLFMVDARDGVTVGDQAIADHLRKQNKKVYLVCNKIDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
            ++   D           I++  G G+E+L   ++       ++ P  I         L 
Sbjct: 125 AHSAMADFYSLSLGELYGIAAAHGRGVEQL---LEICFKPIAEEYPDVIVPKDVASEELE 181



 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 90/201 (44%), Gaps = 27/201 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +  D++S   +    +  +   K+ I+G  N GKS+L N +  ++  +V D+PGTTRD +
Sbjct: 171 VPKDVASEELEHDEIDYDKLPLKLAIVGRPNVGKSTLINRILGEERVVVYDMPGTTRDSV 230

Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEIN---SKK 312
            I +        + DTAG+R    I   +EK  + +T   +E+A+++L++ +     S +
Sbjct: 231 YIPMQRNEREYVLIDTAGVRRRGRIGEAIEKFSVVKTLQAIEDANVVLIVVDARETISDQ 290

Query: 313 EI-----SFPKNIDFIFIGTKSD-LYSTYTEEYD---------------HLISSFTGEGL 351
           ++     +       +    K D L + + EE                 H IS+  G G+
Sbjct: 291 DLNLIGFALNAGRSIVIAVNKWDGLQNDHKEEIKRELDRRLGFVDFARLHFISALHGTGV 350

Query: 352 EELINKIKSILSNKFKKLPFS 372
             L   ++   ++  +++  S
Sbjct: 351 GHLFESVEEAYASATQRISTS 371


>gi|54297453|ref|YP_123822.1| GTP-binding protein EngA [Legionella pneumophila str. Paris]
 gi|148359075|ref|YP_001250282.1| GTP-binding protein EngA [Legionella pneumophila str. Corby]
 gi|296107123|ref|YP_003618823.1| GTP-binding protein EngA [Legionella pneumophila 2300/99 Alcoy]
 gi|81822576|sp|Q5X522|DER_LEGPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225822|sp|A5IC36|DER_LEGPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|53751238|emb|CAH12649.1| hypothetical protein lpp1498 [Legionella pneumophila str. Paris]
 gi|148280848|gb|ABQ54936.1| GTP-binding protein EngA [Legionella pneumophila str. Corby]
 gi|295649024|gb|ADG24871.1| GTP-binding protein EngA [Legionella pneumophila 2300/99 Alcoy]
          Length = 462

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 111/299 (37%), Gaps = 40/299 (13%)

Query: 120 NGKIDLLEAESLADLISSET-----EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
             ++ L EA  +  L+   +     + Q   ++  ++ ++  +  +     T   +   A
Sbjct: 74  QSQVALNEANVILFLVDGRSGLTGIDQQIAQALRKLNKKVHLVVNK-----TDGMNEDIA 128

Query: 175 DLDFSEEEDVQ-NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
             DF        +  S      I  L  +I    +            KI   G  N GKS
Sbjct: 129 CADFQSLGITDVHAISASHGGGISSLLEEILEPFTTETHEATDDKAIKIAFAGRPNVGKS 188

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIK 290
           +L N +  ++  +V D+PGTTRD ++I    E     + DTAG+R     D+ +EK  + 
Sbjct: 189 TLINRILGEERVVVYDMPGTTRDSISIPFTREDKQYVLIDTAGVRRKSRIDEKIEKFSVI 248

Query: 291 RTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSD-LYSTYTEEY-- 339
           +T   ++ A + LLL + N   + ++++            +    K D L   + E+   
Sbjct: 249 KTLQAIKEAHVCLLLLDANEGITDQDMNLLGFIIESGKALVIAVNKWDGLEEDHKEKIKS 308

Query: 340 -------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
                           IS+  G G+  L   I     +  +   FS P   R L  +S 
Sbjct: 309 ELSRRLHFANFAKIRFISALHGSGVGGLFKDINEAYHSAIQS--FSTPKLTRLLQDISA 365



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 17/156 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D PG TRD        E     I DT GI   D
Sbjct: 5   IALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGIGVDD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             V+    +++ + +  A++IL L +  S          +     N     +  K+D  +
Sbjct: 65  IEVDTLMSRQSQVALNEANVILFLVDGRSGLTGIDQQIAQALRKLNKKVHLVVNKTDGMN 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKS 360
                 D         H IS+  G G+  L+ +I  
Sbjct: 125 EDIACADFQSLGITDVHAISASHGGGISSLLEEILE 160


>gi|303284441|ref|XP_003061511.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456841|gb|EEH54141.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 470

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 26/198 (13%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEG 266
            + + GE +    K+ I+G  N GKSSL N L+    AIV+D  GTTRD +  D+ D +G
Sbjct: 188 DEKESGEEVAEPLKVAIVGRPNVGKSSLLNQLSGDARAIVSDHSGTTRDTIDSDVTDADG 247

Query: 267 YLVKISDTAGIRET------DDIVEKEGIKRTFLEVENADLILLLKEINS---------K 311
               + DTAGIR         D  E+  + R    +  A++++L+ +             
Sbjct: 248 NKFTLIDTAGIRRRTAVAAGKDKPEELSVGRALQAMRRAEVVVLVIDAEEGPSQQDFVLA 307

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +  +  +    +    K D+            S    E  + L +K++  +      +  
Sbjct: 308 ERAALTEGCALVLCVNKWDVIDK--------NSYSMNEYTKSLRSKLR--VFEWASVVYV 357

Query: 372 SIPSHKRHLYHLSQTVRY 389
           S  + +R    L+  V  
Sbjct: 358 SALTGQRVQKVLAAAVEA 375



 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 66/185 (35%), Gaps = 35/185 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ I+G  N GKS+LFN L     AIV D PG TRD + +          + DT G+   
Sbjct: 5   RVAIVGRPNVGKSALFNRLTGTKRAIVYDQPGITRDRMYVRAFWGDSEFMMVDTGGLESL 64

Query: 279 --------ETDDIVEKE----GIK-RTFLEVENADLILLLKEINSKKEISFPK------- 318
                     D +   E     I+ +  L V  A  ++++ +  +    +          
Sbjct: 65  PGNPGAAPSVDAVGGFEILPGMIESQAALAVREAASLVMVVDGQTGLTTADVDIYRWIRK 124

Query: 319 ---NIDFIFIGTKSDLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNK 365
              +   +    K +  +   E+               S+ +G G  ++++++ + L   
Sbjct: 125 NHADKPLVLAVNKCESTTRGEEQVLDFWSLGGVTPLAVSAISGTGTGDMMDQLCATLPAV 184

Query: 366 FKKLP 370
                
Sbjct: 185 NADDE 189


>gi|162454229|ref|YP_001616596.1| GTP-binding protein [Sorangium cellulosum 'So ce 56']
 gi|161164811|emb|CAN96116.1| GTP-binding protein [Sorangium cellulosum 'So ce 56']
          Length = 598

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L  K VAIV D PG TRD    D+   G    + DT G     
Sbjct: 161 VALVGRPNTGKSTLFNRLVGKRVAIVHDEPGVTRDRHYGDVTSRGRRFTLVDTGGFDPES 220

Query: 282 DIVEKEGIKRTF-LEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           D   ++GIKR   L +  AD+I+ + +         +++  +        I++  K+D  
Sbjct: 221 DDPMRQGIKRQIDLAIAEADVIVCVLDAVTPVTPSEHAELGLLRRAGKPVIYVANKADSP 280

Query: 333 STYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               E         E    IS+  G G+ +L   I++ L  +      S
Sbjct: 281 KAEVEAAELYRLGMERLIPISALHGRGISDLEMAIEAALPEEPAAPEES 329



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 113/304 (37%), Gaps = 35/304 (11%)

Query: 116 RAFENGKIDLLEAES--LADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           R     +IDL  AE+  +  ++ + T +     +  G+            +K    ++ +
Sbjct: 225 RQGIKRQIDLAIAEADVIVCVLDAVTPVTPSEHAELGLLRRAGKPVIYVANKADSPKAEV 284

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ--GKLGEIIRNGYKIVILGHSNA 230
           EA   +    +     S      I  L+  I + + +      E      +I I+G  NA
Sbjct: 285 EAAELYRLGMERLIPISALHGRGISDLEMAIEAALPEEPAAPEESAEGALRIAIIGRPNA 344

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR------ETDDIV 284
           GKSSL N +A ++  +V   PGTTRD +    + +G    + DTAGIR      + D  V
Sbjct: 345 GKSSLVNRIAGEERMLVDATPGTTRDPIDTLAERDGKRFLLIDTAGIRRKSKVAKEDSAV 404

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL----- 331
           E   +      +E A+++LLL +              ++  +    +    K DL     
Sbjct: 405 EAVSVIHAIRAMERAEVVLLLCDAAEGVAEQDAKILGLAVDRGCGVVIGLNKIDLLDRKA 464

Query: 332 -----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                       S         +S+ +G G+ +LI  +  +     K++P    +     
Sbjct: 465 LAKAEQDARDKLSFVPWAPIAHVSARSGRGVAKLIETVAQVADAYRKRVPTGELNRFFEQ 524

Query: 381 YHLS 384
             L+
Sbjct: 525 ILLT 528


>gi|322831770|ref|YP_004211797.1| ribosome-associated GTPase EngA [Rahnella sp. Y9602]
 gi|321166971|gb|ADW72670.1| ribosome-associated GTPase EngA [Rahnella sp. Y9602]
          Length = 494

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+
Sbjct: 207 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRK 266

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A++++L+ +     S +++S            + +  K
Sbjct: 267 RGKVTETVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNK 326

Query: 329 SDLYSTYTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D  S                       H IS+  G G+  L   +    +    ++  S
Sbjct: 327 WDGMSEEARAQVKDQLDLRLGFVDFARIHFISALHGSGVGNLFESVNEAYTCATTRVSTS 386

Query: 373 IPSH 376
           + + 
Sbjct: 387 LLTR 390



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L K   A+V D PG TRD      ++EG    I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTKTRDALVADFPGLTRDRKYGRAEIEGNEFIIVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           D VE     ++ L +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  DGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
             +   D           I++  G G+ +LI  +
Sbjct: 125 PDSATGDFYSLGLGDVYAIAASHGRGVTQLIEHV 158


>gi|72383562|ref|YP_292917.1| GTP-binding protein EngA [Prochlorococcus marinus str. NATL2A]
 gi|123620367|sp|Q46H20|DER_PROMT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|72003412|gb|AAZ59214.1| Small GTP-binding protein protein domain:GTP-binding protein
           [Prochlorococcus marinus str. NATL2A]
          Length = 456

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 15/168 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +      L E+  +  ++ I+G  N GKSSL N++  +  AIV+ I GTTRD 
Sbjct: 156 DLLDQVVNLFPSKDLDEVSDSPVQLAIIGRPNVGKSSLLNSICGETRAIVSSIRGTTRDT 215

Query: 258 LTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI---NSK 311
           +   +  +G   K+ DTAGI   R  +   E  GI R+F  +E +D+ +L+ +     ++
Sbjct: 216 IDTRITHQGKEWKLVDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTE 275

Query: 312 KEISFP-----KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           ++         +    + +  K D      E+  H +S+   +   +L
Sbjct: 276 QDQRLAGRIEQEGRACLIVINKWDAV----EKDSHTMSAMEKDIRSKL 319



 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 19/163 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCQSREAIVHDEPGVTRDRTYQDGFWRDRDFKVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           D     E  ++  L +E A + L++ +          S  E    ++   + +  K +  
Sbjct: 66  DSEFLPEIREQANLALEEAVVALVIVDGQEGITTADESIAEFLRSRSGKTLVVVNKCESP 125

Query: 333 S----------TYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                             + IS+  G G  +L++++ ++  +K
Sbjct: 126 EQGLAMAAQFWKLGLGEPYPISAIHGVGTGDLLDQVVNLFPSK 168


>gi|293363486|ref|ZP_06610242.1| ribosome-associated GTPase EngA [Mycoplasma alligatoris A21JP2]
 gi|292552835|gb|EFF41589.1| ribosome-associated GTPase EngA [Mycoplasma alligatoris A21JP2]
          Length = 434

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 15/165 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+ FN L  + V+IV D PG TRD L  ++D  G  +K  DT GI   
Sbjct: 4   KVAIIGKPNVGKSTFFNRLIGRKVSIVYDQPGVTRDRLYENVDWVGKQLKFIDTGGIEIE 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL- 331
           +   +++   +  + +E AD+I+ L +  S+          I    N   I +  K +  
Sbjct: 64  NKPFQEQIQIQAKIAIEEADVIIFLFDGTSEITNDDLFIMNILRKSNKHIITVANKLESN 123

Query: 332 ----YSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLP 370
               YS Y    DH+   S+  GEG+ E++++    L     +  
Sbjct: 124 QQFDYSWYKLGSDHIFAISALHGEGVGEVLDECLKYLDFSEAQED 168



 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 13/151 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ++   ++   +  E     +K+ I+G  NAGKSSL N LAK++ +IV++I GTTRD 
Sbjct: 151 EVLDECLKYLDFSEAQE--DKEFKLSIIGKPNAGKSSLLNNLAKENRSIVSEIAGTTRDS 208

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +++ G    I DTAGI +   +VE      + R    +  ADL L++ +  S+   
Sbjct: 209 VKSIVEINGQKYNIIDTAGIMKKSRLVESVDHYALMRAMDSLNEADLSLIIVDSTSQISH 268

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE 337
                   +   N   + +  K DL    T 
Sbjct: 269 FDSRIIGYALENNKPIVVVINKWDLIEKETN 299


>gi|255037605|ref|YP_003088226.1| small GTP-binding protein [Dyadobacter fermentans DSM 18053]
 gi|254950361|gb|ACT95061.1| small GTP-binding protein [Dyadobacter fermentans DSM 18053]
          Length = 436

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 79/202 (39%), Gaps = 21/202 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +H     +        +I I+G  N GKSS  N L   D +IVTDI GTTRD 
Sbjct: 155 ELLDKVVTHFETAGIENPEEGIPRIAIMGRPNVGKSSFLNVLTGTDRSIVTDIAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G    ++DTAGIR    +   +E     R+   +E +D+ ++L +     E 
Sbjct: 215 IHTHYNAFGMNFILTDTAGIRRKSRVKEDIEFYSTLRSVKAMEESDVCIVLLDATLGLEG 274

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                   +       + +  K DL    ++  D           + L+ K+     N  
Sbjct: 275 QDMNIIGQADKAKKGIVIMVNKWDLVEKDSKTADQYK--------KALLEKL--APMNYM 324

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
             +  S+   +R    + + + 
Sbjct: 325 PIIFASVVEKQRIHQVMEKAME 346



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 19/174 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           I I+G  N GKS+LFN L +   AI+ +  G TRD      +       + DT G +  +
Sbjct: 5   ISIVGRPNVGKSTLFNRLTESRKAIMDNQSGVTRDRHYGYGEWTDQYFTVIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
           +DI E     +  L +E + ++L + +     +  +  F       N     +  K++  
Sbjct: 65  EDIFEGAIRDQVELAIEESTVVLFMVDTMTGLTDLDKDFANVLRRFNKPVYLVANKAETT 124

Query: 333 STYTEEYDHL----------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             Y    +            IS+ TG G  EL++K+ +       + P      
Sbjct: 125 ERYQSAGEFYELGLGDEIFAISAQTGFGTGELLDKVVTHFETAGIENPEEGIPR 178


>gi|149002004|ref|ZP_01826958.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS69]
 gi|147759813|gb|EDK66803.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS69]
          Length = 353

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 71  DVLDAIVENLPN-EYEEENPDVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 129

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D +G    + DTAG+R++  +    EK  + R    ++ +D++L++  IN+++ 
Sbjct: 130 IDTHFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEG 187

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                              +S+
Sbjct: 188 IREYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYAPIIFVSA 247

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK I  ++  ++P ++ +
Sbjct: 248 LTKQRLHKLPEMIKQISESQNTRIPSAVLN 277


>gi|294783341|ref|ZP_06748665.1| ribosome-associated GTPase EngA [Fusobacterium sp. 1_1_41FAA]
 gi|294480219|gb|EFG27996.1| ribosome-associated GTPase EngA [Fusobacterium sp. 1_1_41FAA]
          Length = 441

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 21/181 (11%)

Query: 178 FSEEEDVQNFS----------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           F +++D+ +F           S E   ++  + + +   I +    E   +  K+ ++G 
Sbjct: 125 FEQQDDIYDFYGLGFEYLVPISGEHKVNLGDMLDIVVEIIGRMDFPEEDEDVLKLAVIGK 184

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIV 284
            NAGKSSL N L+  +  IV+DI GTTRD +   ++ +     I DTAGIR     ++ +
Sbjct: 185 PNAGKSSLVNKLSGSERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRKSKVEESL 244

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           E   + R    ++ AD+ +L+ +              I+  +    I +  K DL     
Sbjct: 245 EYYSVLRALKSIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIVVMNKWDLVENKN 304

Query: 337 E 337
            
Sbjct: 305 N 305



 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   IAIVGRPNVGKSTLFNNLIGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +         +    I   KN   I    K D  
Sbjct: 65  NDFLMTKIKEQAEVAMNEADVILFVVDGKAGLNPLDDEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             Y E+ D +   F G G E L+
Sbjct: 123 -NYFEQQDDIY-DFYGLGFEYLV 143


>gi|262374928|ref|ZP_06068162.1| ribosome-associated GTPase EngA [Acinetobacter lwoffii SH145]
 gi|262309941|gb|EEY91070.1| ribosome-associated GTPase EngA [Acinetobacter lwoffii SH145]
          Length = 469

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 113/278 (40%), Gaps = 38/278 (13%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 73  EQSKTAIHEADIIIFVVDARAGLLASDEQIARELRTL-GKKVFLVANKVDGVHAEAALVE 131

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAG 231
              L   E   V     + V   +  +  D+          E  +N G ++ I+G  N G
Sbjct: 132 FYKLGMGEPLQVAASHGRGVQQMLEDVLADVP---EDENPEEHDKNTGLRLAIIGRPNVG 188

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KS+L N L  ++  +  D PGTTRD + I  + +G    + DTAG+R     D+++EK  
Sbjct: 189 KSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVRRKGKVDEMIEKFS 248

Query: 289 IKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEEY- 339
           I +T   +++A++I+++ +      ++++     +       +    K D  + Y  +  
Sbjct: 249 IVKTLQAMKDANVIVVVVDARDGIVEQDLHLIGYALEAGRAMVIAVNKWDNMTEYDRKQC 308

Query: 340 ---------------DHLISSFTGEGLEELINKIKSIL 362
                           HLIS+  G G+ +L   I    
Sbjct: 309 KLDVERRFDFIPWAKVHLISALHGTGVGDLYPSIHRAY 346



 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E +
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGENE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
             ++    +++   +  AD+I+ + +  +    S  +              +  K D
Sbjct: 65  GGIDSYMAEQSKTAIHEADIIIFVVDARAGLLASDEQIARELRTLGKKVFLVANKVD 121


>gi|303232074|ref|ZP_07318777.1| ribosome-associated GTPase EngA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513180|gb|EFL55219.1| ribosome-associated GTPase EngA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 444

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 29/212 (13%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            + L ++  L +D   H           +   + I+G  N GKSSL NAL  +D  IV+D
Sbjct: 149 AKNLMNLGDLLDDTVKHFPPVGTNVDEEDTIHVAIIGRPNVGKSSLTNALLGQDRVIVSD 208

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLK 306
           + GTTRD +            + DTAG+R     D+ VE+  I R+   V+ +D+++L+ 
Sbjct: 209 VAGTTRDSIDTHWTHGDQKFVLIDTAGMRRKSKIDEAVERYSIVRSLRSVDRSDIVVLVL 268

Query: 307 E-----INSKKEI---SFPKNIDFIFIGTKSDLYST-------YTEEY-----------D 340
           +         K+I   ++      I +  K DL          YTE+             
Sbjct: 269 DGVDGVTEQDKKIAGYAYEAGKGVIIVVNKWDLVEKDDKTTLRYTEDIYDELGFLQFAPI 328

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              S+ T + +  L + +K +   +++++   
Sbjct: 329 LFASALTKQRIHRLADMLKFVSEQQYRRVSTG 360



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 20/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + ++G  N GKS+LFNA+  K ++IV DIPG TRD +  D +       + DT GI    
Sbjct: 6   VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFVT 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKE---ISFPKNIDFIFIGTKSD 330
           E   ++ K    +  L +E AD+IL + +     + + +E   I        + +  K D
Sbjct: 66  ENSHVIPKMMRLQAELAIEEADVILFVVDGKQGIVPADEEVANILRTSGKPVVLVVNKID 125

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELIN 356
             +  +  Y+            S+     L +L++
Sbjct: 126 SVNQESNIYEFYNLGLGDPIGISAKNLMNLGDLLD 160


>gi|332830164|gb|EGK02792.1| GTP-binding protein engA [Dysgonomonas gadei ATCC BAA-286]
          Length = 437

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 18/176 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L +   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTESRQAIVDETSGTTRDRQYGKTEWGGQEFSLVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
             +DD+ E E  K+  + +E AD+IL L ++        +S   +        I +  K+
Sbjct: 62  VNSDDVFESEINKQVSIAIEEADVILFLVDVMNGLTDLDSSVGNMLRRSKKPIILVSNKA 121

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           D ++ + +  +           IS+  G G  +L++ I +  + K ++        
Sbjct: 122 DNFNLHHQSAEFYALGLGDPVNISAINGAGTGDLLDLIITKFTKKSEEEHLEDIPR 177



 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 30/204 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I +  ++    E + +  +I I+G  NAGKSS  NAL  ++  IVT+I GTTRD 
Sbjct: 154 DLLDLIITKFTKKSEEEHLEDIPRIAIVGRPNAGKSSFVNALMDEERNIVTNIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    D       + DTAGIR+   +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRFDRFNMDFYLVDTAGIRKKGKVTEDLEYYSVIRSIKAIENSDVCVLMLDATQGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYST-------------------YTEEYDHLISSFT 347
                  +        +    K DL                      +T+      S+ T
Sbjct: 274 QDLNIFSLIQKNRKGLVVCVNKWDLVENKEQIVIKTFEHAIRERLAPFTDFPIIFASAVT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPF 371
            + + +++   K +   +  K+P 
Sbjct: 334 KQRVLKVLETAKEVFVRRKTKIPT 357


>gi|270291293|ref|ZP_06197515.1| ribosome-associated GTPase EngA [Pediococcus acidilactici 7_4]
 gi|304385042|ref|ZP_07367388.1| ribosome-associated GTPase EngA [Pediococcus acidilactici DSM
           20284]
 gi|270280139|gb|EFA25975.1| ribosome-associated GTPase EngA [Pediococcus acidilactici 7_4]
 gi|304329236|gb|EFL96456.1| ribosome-associated GTPase EngA [Pediococcus acidilactici DSM
           20284]
          Length = 435

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI+  +
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTHSEWLGRKFNLIDTGGIQIGE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYS 333
           +   +E   +  L +  AD+I+ +  +         +  +I +  +   I    K D   
Sbjct: 66  EPFLEEIRDQAELAINEADVIIFIVSVREGVSDADEAVAKILYKADKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD            S   G GL +L++ + +    K  +      
Sbjct: 126 LRQDIYDFYSLGFGDPYPLSGSHGLGLGDLLDAVIANFPEKEAQEDDEAI 175



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 17/171 (9%)

Query: 194 NDILFLKNDISSHISQGKLGEI--IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
           +  L L + + + I+     E        +  ++G  N GKSSL NA+  +   IV+DI 
Sbjct: 147 SHGLGLGDLLDAVIANFPEKEAQEDDEAIRFSLIGRPNVGKSSLVNAILGEQRVIVSDIA 206

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI 308
           GTTRD +       G    + DTAG+R+   I    E+  + R    ++N++++L++  +
Sbjct: 207 GTTRDAIDTRFTSNGDEFVMVDTAGMRKKGKIYENTERYSVMRAMKAIDNSNVVLVV--L 264

Query: 309 NSKKEI----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
           N+++ I          +       + +  K D          +   S   E
Sbjct: 265 NAEEGIREQDKRIAGYAHEAGRAIVIVVNKWDKLKKDNHSLSNFEQSIRQE 315


>gi|194016775|ref|ZP_03055388.1| ribosome-associated GTPase EngA [Bacillus pumilus ATCC 7061]
 gi|194011381|gb|EDW20950.1| ribosome-associated GTPase EngA [Bacillus pumilus ATCC 7061]
          Length = 436

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 85/226 (37%), Gaps = 26/226 (11%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   T+    L++  +         +    +    +     L F 
Sbjct: 91  NGRDGVTSADEEVAKILYRTKKPVVLAVNKLDNP------EMRSDVYDFYA-----LGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   +    L D   L + ++ H       +      +  ++G  N GKSSL NA+
Sbjct: 140 EPYPISG-THGLGLGD---LLDAVAEHFKNLPDTQYDEQVVQFCLIGRPNVGKSSLVNAM 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             +D  IV++I GTTRD +            I DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEDRVIVSNIAGTTRDAVDTMFTYNQRDFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 255

Query: 297 ENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST 334
           + +D++ ++ +     I   K I   +       + +  K D    
Sbjct: 256 DRSDVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVEK 301



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+I+ +      + S  E    I +      +    K D   
Sbjct: 66  EPFLAQIRHQAEIAMDEADVIIFMVNGRDGVTSADEEVAKILYRTKKPVVLAVNKLDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
             ++ YD           IS   G GL +L++ +     N
Sbjct: 126 MRSDVYDFYALGFGEPYPISGTHGLGLGDLLDAVAEHFKN 165


>gi|40062766|gb|AAR37660.1| GTP-binding protein, Era/TrmE family [uncultured marine bacterium
           439]
          Length = 463

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 91/232 (39%), Gaps = 28/232 (12%)

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ-GKLGEIIRNGYKIVILGH 227
            + + A   F          S E    I  L       + Q  +  E    G  + +LG 
Sbjct: 125 LNQVTAAEFFELGLGEPVLISAEHNQGISELIEITIPLLPQNFENNETEVKGIAVAVLGR 184

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIV 284
            N GKS+L N +  ++  +  DIPGTTRD + I    EG    + DTAGIR     ++ V
Sbjct: 185 PNVGKSTLINRILGEERVLAIDIPGTTRDTIFIPFTREGEQYTLIDTAGIRRKRSVEEKV 244

Query: 285 EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYT 336
           EK  I +    +E++ +++L+ + +   ++++ +       K    + +  K D    Y 
Sbjct: 245 EKFSIIKAIEALEDSHVVILVLDAHEGVTEQDATLLGMIADKGRALLIVINKWDGLDDYQ 304

Query: 337 E----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +                   H IS+  G G+ +L   I+    +   K   S
Sbjct: 305 KSEVKRKLDVKLSFISYASVHYISALHGSGVGKLFTHIRKSFEHAGAKFSTS 356



 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280
           I ++G  N GKS+LFN L+    A+V+D  G TRD     + L+      I DT G+   
Sbjct: 6   ISLVGRPNVGKSTLFNRLSNSRQALVSDFEGLTRDRQYATVQLDDETMCSIIDTGGLTNE 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIGTKSD- 330
           D +++    ++    ++ +D+I  +          +++   ++   K  + I +  K++ 
Sbjct: 66  DSLIDTGIHEQVLSALDESDVIFFIVSNKDGVTSLDLDISSQLRKLKK-NIILVCNKAEG 124

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           L      E+         LIS+   +G+ ELI     +L   F+     +
Sbjct: 125 LNQVTAAEFFELGLGEPVLISAEHNQGISELIEITIPLLPQNFENNETEV 174


>gi|73749080|ref|YP_308319.1| GTP-binding protein EngA [Dehalococcoides sp. CBDB1]
 gi|73660796|emb|CAI83403.1| GTP-binding protein EngA [Dehalococcoides sp. CBDB1]
          Length = 442

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 17/126 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ ++G +N GKS+L N    ++ +IV++IPGTTRD +   LD +G  V + DTAGIR 
Sbjct: 181 VKLALVGRTNVGKSTLLNTFLGEERSIVSNIPGTTRDAIDTPLDFDGTNVLLIDTAGIRR 240

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-----------FIFI 325
              +    EK  + R    ++ AD++LL+ +    +E+   ++              I I
Sbjct: 241 RGKVESGVEKYSVLRALKAIDRADVVLLVMD---TEELVTAQDTHIAGYVRDTAKGIIII 297

Query: 326 GTKSDL 331
             K DL
Sbjct: 298 LNKWDL 303



 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N LA K++AI  D+PGTTRD L   +      + + DT G+  + 
Sbjct: 9   IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFATVSWLDRRLIMVDTGGLDPDI 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           + ++ ++   +  L ++ ADL+LL+ ++            +I        I +  K+D  
Sbjct: 69  ESVIGQQVNIQISLAIKEADLVLLVVDVKDGLITPDYEMADIIRRTGKPVILVANKADNL 128

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
               E  +           IS+F G G+ +L++++   L ++    P 
Sbjct: 129 KMGQEATEFYSLGFGEPAVISAFHGTGISDLMDRVLEELPDQPIATPE 176


>gi|329667448|gb|AEB93396.1| putative GTP-binding protein EngA [Lactobacillus johnsonii DPC
           6026]
          Length = 435

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 106/292 (36%), Gaps = 47/292 (16%)

Query: 131 LADLISSETEMQRRLS--------MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           + + I ++ E+    +        +      +     + + +            D  E+ 
Sbjct: 68  IEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLYRTKKPVILAINKADNPEQR 127

Query: 183 DVQNFSSKEVLNDILFLK--------NDISSHISQG--KLGEIIRNGYKIVILGHSNAGK 232
                     L D + +         + + + + +   K  +   +  +  ++G  N GK
Sbjct: 128 TDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGDKANQHEDDSIRFSVIGRPNVGK 187

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGI 289
           SSL NA+  +   IV++I GTTRD +      +G    I DTAGIR    +    EK  +
Sbjct: 188 SSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKVYEKTEKYSV 247

Query: 290 KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTE---- 337
            R    +E +D+ LL+ + ++            +       I +  K DL    +     
Sbjct: 248 LRAISAIEESDITLLVLDASTGIREQDKHVAGYAHDAGRGVIIVVNKWDLPKKDSRSMKD 307

Query: 338 --------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                              +S+ TG+ + +++  +K +  N+ +++  S+ +
Sbjct: 308 FEDTIRREFQYLDYAPIIFVSAKTGQRVPDILKLVKEVHENQTRRIQSSVLN 359



 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D  G TRD +    +  G+   + DT GI    
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLDS 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +E++   +  + ++ AD+I++L ++            ++ +      I    K+D   
Sbjct: 66  GEIEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLYRTKKPVILAINKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             T+ YD           +S   G G+ +L++ I     +K  +      
Sbjct: 126 QRTDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGDKANQHEDDSI 175


>gi|294340463|emb|CAZ88844.1| GTPase involved in ribosome synthesis and maintenance [Thiomonas
           sp. 3As]
          Length = 465

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 27/191 (14%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              +  +   +  ++ I G  N GKS+L NAL  ++  I  D+PGTTRD + +  + +G 
Sbjct: 188 PGAETTKPREHSLRLAIAGRPNVGKSTLVNALVGEERVIAFDMPGTTRDAIEVPFERDGR 247

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISF 316
              + DTAG+R    +    EK  + +T   +E A++++LL +               + 
Sbjct: 248 KFILIDTAGLRRKGKVFEAVEKFSVIKTLQAIEQANVVVLLLDATEGVSDQDAHIASFAV 307

Query: 317 PKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKS 360
                 +    K D   TY  E                  H IS+ TG GL  L+  + +
Sbjct: 308 EAGRALVLAANKWDAVDTYGRERLMVAIRQRLPFVSFAKFHSISARTGSGLNGLMKSVVA 367

Query: 361 ILSNKFKKLPF 371
             +  ++KLP 
Sbjct: 368 AHAAAYRKLPT 378



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 72/166 (43%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN + +   AIV D+PG TRD     L +    V + DT G     
Sbjct: 5   VSLVGRPNVGKSTLFNRMTRSRDAIVADMPGLTRDRHYGMLRMADRPVIVVDTGGFEPVV 64

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
           D  +  +  ++T   +  +DL++ L ++    S +++             +    K++  
Sbjct: 65  DTGIVHQMARQTRQAIAESDLVVFLVDLRTGLSPQDLHIAAELRKTGKPILLAVNKAEGR 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
             +    +           IS+  G+ + +L+++I   L ++  + 
Sbjct: 125 HGHPALAEFHELGLGEPFSISAAHGDSVPDLLDRILQALPSEPSEG 170


>gi|39938726|ref|NP_950492.1| GTP-binding protein EngA [Onion yellows phytoplasma OY-M]
 gi|39721835|dbj|BAD04325.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 478

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 13/205 (6%)

Query: 158 YGQWIDKLTHIR--SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
            G  +DK+  +   + + +D  F E+  +              +         Q +  E 
Sbjct: 151 IGDLLDKIVFLMRDAALISDSSFLEDLSIDTPLQSPPSEFNYEIPEKQLLEPEQNQNQEK 210

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
             N  K  ++G  N GKS+L N+L      IV+D+ GTT D +    + +G   +I DTA
Sbjct: 211 DNNIIKFCVVGRPNVGKSTLTNSLLASQRMIVSDMAGTTTDAVDTFFENDGQKYQIIDTA 270

Query: 276 GIRETDDIVE---KEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIF 324
           GI++   I E   K  + R    +E AD+  L+ +         K I+      +   I 
Sbjct: 271 GIKKRGKIYEQEDKYSVLRALGALEKADIACLVLDAKEGILEQDKNIAGFILEHHKACII 330

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGE 349
           I  K DL    T    +       E
Sbjct: 331 IVNKWDLLEKDTNTLKNFEQKIRQE 355



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 17/172 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +KI I+G  N GKSSLFN +  +  AI     G TRD +    +       + DT GI  
Sbjct: 3   FKIAIVGRPNVGKSSLFNRIIGRRHAITHQKAGITRDRIYATAEWFTKTFGVIDTGGIEI 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDL 331
                 ++   +  L V+ AD+I+ + +     ++ +I   K         +    K D 
Sbjct: 63  QSTPFLEQIKLQAQLAVDEADVIVFVVDGQTGLTQNDIYLAKLLYKTKKPVLLAVNKIDN 122

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           ++  +  Y+           IS+  G G+ +L++KI  ++ +       S  
Sbjct: 123 HNLLSNTYEFYALGFDTPFAISTQHGIGIGDLLDKIVFLMRDAALISDSSFL 174


>gi|161524640|ref|YP_001579652.1| GTP-binding protein EngA [Burkholderia multivorans ATCC 17616]
 gi|189350604|ref|YP_001946232.1| GTP-binding protein EngA [Burkholderia multivorans ATCC 17616]
 gi|238687037|sp|A9AH00|DER_BURM1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|160342069|gb|ABX15155.1| small GTP-binding protein [Burkholderia multivorans ATCC 17616]
 gi|189334626|dbj|BAG43696.1| GTP-binding protein [Burkholderia multivorans ATCC 17616]
          Length = 445

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
            +    + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RSGKVFEAIEKFSVVKTLQSISDANVVILLLD--AQQDISDQDAHIAGFVVEQGRALVIG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  E                  H IS+    G+  L+  +    +    KL
Sbjct: 297 VNKWDGLDEHARERAKADLTRKLKFLDFAKSHFISAAKKTGIGALMRSVDDAYAAAMAKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  D           IS+  G+G+ ++IN+   +      +    
Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDMINEALEVAYADQPEEEDD 173


>gi|168180594|ref|ZP_02615258.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
 gi|226949875|ref|YP_002804966.1| GTP-binding protein EngA [Clostridium botulinum A2 str. Kyoto]
 gi|254783146|sp|C1FSU2|DER_CLOBJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|182668460|gb|EDT80439.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
 gi|226841615|gb|ACO84281.1| ribosome-associated GTPase EngA [Clostridium botulinum A2 str.
           Kyoto]
 gi|322806789|emb|CBZ04358.1| GTP-binding protein EngA [Clostridium botulinum H04402 065]
          Length = 439

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 97/258 (37%), Gaps = 29/258 (11%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  M  +        ++K+  ++    A   ++         S      +  + + +  +
Sbjct: 104 VAQMLRKSKKPVVLVVNKIDKLKDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEY 163

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
               +          I  +G  N GKSSL N L  ++  IV+DIPGTTRD +   +D E 
Sbjct: 164 FKDDESDGEDDERINIAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTEF 223

Query: 267 YLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----- 318
               + DTAG+R      + +E+  + RT+  +E AD+ +L+ +          K     
Sbjct: 224 GEFTLIDTAGLRRKSKVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQKIIGYA 283

Query: 319 ---NIDFIFIGTKSDLYSTYTEEYDH------------------LISSFTGEGLEELINK 357
              N   + I  K DL     +  D                    IS+ TG+ + +++  
Sbjct: 284 HDINKAILVIVNKWDLVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQRVVKVLQT 343

Query: 358 IKSILSNKFKKLPFSIPS 375
            K    N  K++   + +
Sbjct: 344 AKECYDNYTKRVKTGVLN 361



 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D PG TRD +  + +   Y   + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPKS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           +DI+  +  ++  + +E A++I+ L +       + +E++          + +  K D  
Sbjct: 66  EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADEEVAQMLRKSKKPVVLVVNKIDKL 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
                 Y+            SS    GL ++++++    
Sbjct: 126 KDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEYF 164


>gi|167765447|ref|ZP_02437560.1| hypothetical protein BACSTE_03837 [Bacteroides stercoris ATCC
           43183]
 gi|167697075|gb|EDS13654.1| hypothetical protein BACSTE_03837 [Bacteroides stercoris ATCC
           43183]
          Length = 437

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +DDI E+E  K+  + V+ AD+IL + ++ +           I        + +  K+
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDLQVASILRRTKKPVLLVANKT 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D   L     E Y       + IS+ TG G  +L++ I      +  ++
Sbjct: 122 DNNELQYNAPEFYSLGLGDPYCISAVTGSGTGDLMDLIVENFKKESDEI 170



 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I  +  +     +  +  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DLMDLIVENFKKESDEILDEDIPRFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR+ + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENSDVCILMLDATRGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDL-------------------YSTYTEEYDHLISSFT 347
                  +    +   + +  K DL                   ++ + +      S+ T
Sbjct: 274 QDLNIFSLIQKNSKGLVVVVNKWDLVEDKTVKVMKTFENAIRNRFAPFVDFPIIFASALT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + + +++ + +++  N+  ++P +
Sbjct: 334 KQRILKVLEEARTVYENRMIRIPTA 358


>gi|321311009|ref|YP_004193338.1| GTP binding protein EngA [Mycoplasma haemofelis str. Langford 1]
 gi|319802853|emb|CBY93499.1| GTP binding protein EngA [Mycoplasma haemofelis str. Langford 1]
          Length = 436

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 12/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L   I SH+ + ++ E      KI I+G  N GKSSL N+L K++  +V+++ GTTRD 
Sbjct: 153 NLLTSIVSHLGEEEIFEEEGERLKIAIIGRPNVGKSSLVNSLLKRERVLVSEVAGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETD----DIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
           + +D    G    + DT GI+       D  EK  + R    +  A+ ++ + +I+    
Sbjct: 213 IDLDFSFNGKRYTLIDTPGIKRHSQMRVDEKEKYSVLRAQKAIARANTLIFMLDISEDLS 272

Query: 313 -------EISFPKNIDFIFIGTKSDLYS 333
                   + F  NI  + +  K DL  
Sbjct: 273 ELDERVGGLIFKANIPTLIVANKWDLVE 300



 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 16/158 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            +VI+G  N GKS LFN L  +  A+V   PG TRD +T++         ++DT G    
Sbjct: 5   NVVIIGKPNVGKSQLFNRLVGERHAVVFSEPGVTRDRITLECSWLHRSFLLTDTGGYTLD 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIGTKSDL 331
           +   ++E  ++T + ++ ADLIL L          +    K +   +  + + +  K D+
Sbjct: 65  NYSFQQEINRQTEIALKEADLILFLTSAKDGIDADDFQIAKTLKKNRAPNVLVVVNKCDV 124

Query: 332 YSTYTEEY-------DHLISSFTGEGLEELINKIKSIL 362
                + +         +IS+  G     L+  I S L
Sbjct: 125 KGADVQSHLKLGFGEGIVISAEHGINTGNLLTSIVSHL 162


>gi|283458421|ref|YP_003363045.1| putative GTPase [Rothia mucilaginosa DY-18]
 gi|283134460|dbj|BAI65225.1| predicted GTPase [Rothia mucilaginosa DY-18]
          Length = 528

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 134/347 (38%), Gaps = 62/347 (17%)

Query: 86  HGGIAVVNGIL---EELAKM-PNL---RLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
            G   ++N IL   E + +  P +   R++   E+  ++F    +D    ES A  I ++
Sbjct: 87  VGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWLGKSF--TLVDTGGWESDARGIDAQ 144

Query: 139 TEMQRRLSMEGMSG----------------ELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
              Q  +++E                    ++  +  +    +  I + I+      E  
Sbjct: 145 VAEQAEIAVEQADVVVLVVDARVGVTASDEQIVRMLRRVKKPIILIANKIDDAHLEPEIY 204

Query: 183 DVQNFSSKEVLN----DILFLKNDISSHIS------QGKLGEIIRNGYKIVILGHSNAGK 232
           ++ +    +           L + +   +       Q    E +    ++ ++G  N GK
Sbjct: 205 NLWSLGMGQPFPVSGLHGRGLADALDEILEVMPEHSQFAQPEALGGPRRVALVGRPNVGK 264

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289
           SSL N LA  + A+V D+ GTTRD +   ++L GY  +  DTAGIR    +    E    
Sbjct: 265 SSLLNKLAGSERAVVNDLAGTTRDPIDEIIELGGYPWRFVDTAGIRRRQHMAKGAEFYSS 324

Query: 290 KRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD---------LY 332
            RT   +E +++ ++L +++   S++++   +         +    K D         L 
Sbjct: 325 LRTQTALERSEVAVVLLDVSEPISEQDVRIVQTVIDSGRAMVLAFNKWDTLDEDRRYMLE 384

Query: 333 STYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                +  H        IS+ TG   ++L+  ++  L +   ++P  
Sbjct: 385 REIERDLAHVQWAPRVNISAKTGWHKDKLVPALERSLESWDSRIPTG 431



 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 90/238 (37%), Gaps = 30/238 (12%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           + G   +++    +  D+    R+   A L+  E+ D+       +       + +    
Sbjct: 17  LGGGEDDVTERLAEIDDETADQRAQ--ALLEGLEDYDLDEEDRALLGAWGFDFEEEEEQL 74

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
                          + I+G  N GKS++ N +  +  A+V D PG TRD ++   +  G
Sbjct: 75  AD-----------PVVAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWLG 123

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL------KEINSKKEISFPK-- 318
               + DT G       ++ +  ++  + VE AD+++L+         + ++ +   +  
Sbjct: 124 KSFTLVDTGGWESDARGIDAQVAEQAEIAVEQADVVVLVVDARVGVTASDEQIVRMLRRV 183

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFK 367
               I I  K D      E Y+           +S   G GL + +++I  ++    +
Sbjct: 184 KKPIILIANKIDDAHLEPEIYNLWSLGMGQPFPVSGLHGRGLADALDEILEVMPEHSQ 241


>gi|237739602|ref|ZP_04570083.1| GTP-binding protein engA [Fusobacterium sp. 2_1_31]
 gi|229423210|gb|EEO38257.1| GTP-binding protein engA [Fusobacterium sp. 2_1_31]
          Length = 441

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 21/181 (11%)

Query: 178 FSEEEDVQNFS----------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           F +++D+ +F           S E   ++  + + +   I +    E   +  K+ ++G 
Sbjct: 125 FEQQDDIYDFYGLGFEYLVPISGEHKVNLGDMLDIVVEIIGRMDFPEEDEDVLKLAVIGK 184

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIV 284
            NAGKSSL N L+  +  IV+DI GTTRD +   ++ +     I DTAGIR     ++ +
Sbjct: 185 PNAGKSSLVNKLSGSERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRKSKVEESL 244

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           E   + R    ++ AD+ +L+ +              I+  +    I +  K DL     
Sbjct: 245 EYYSVLRALKSIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIVMNKWDLVENKN 304

Query: 337 E 337
            
Sbjct: 305 N 305



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L    +AIV D+PG TRD L  D +  G    I DT G+    
Sbjct: 5   IAIVGRPNVGKSTLFNNLIGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           +D +  +  ++  + +  AD+IL + +         +    I   KN   I    K D  
Sbjct: 65  NDFLMTKIKEQAEVAMNEADVILFVVDGKAGLNPLDDEIAYILRKKNKPVILCVNKID-- 122

Query: 333 STYTEEYDHLISSFTGEGLEELI 355
             Y E+ D +   F G G E L+
Sbjct: 123 -NYFEQQDDIY-DFYGLGFEYLV 143


>gi|170750287|ref|YP_001756547.1| small GTP-binding protein [Methylobacterium radiotolerans JCM 2831]
 gi|170656809|gb|ACB25864.1| small GTP-binding protein [Methylobacterium radiotolerans JCM 2831]
          Length = 448

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 71/181 (39%), Gaps = 18/181 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +   + I+G  N GKS+LFN L  K +A+V D PG TRD    D+   G   ++ DTAG+
Sbjct: 2   DMPTVAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDVAFGGLEFRVIDTAGL 61

Query: 278 RETDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
            E D          +T   +  AD++L + +  +          E+        I I  K
Sbjct: 62  EEADAASLTGRMRMQTEAAILAADVVLFVIDARAGVLPADQPFAELVRRAGCPVILIANK 121

Query: 329 SDLYS---------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           ++  +         T         S+  GEGL EL   +K  L  +            R 
Sbjct: 122 AEGGAGLAGAYEAFTLGLGDPIPFSAEHGEGLGELHEALKGALPQRDADEDPDDAPGGRA 181

Query: 380 L 380
           L
Sbjct: 182 L 182



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 11/125 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  NAGKS+L N +  +D  +V    G TRD +++D +  G  +K+ DTAG+R 
Sbjct: 182 LKVAIVGRPNAGKSTLINRMLGEDRLLVGPEAGITRDSISLDWEWRGRRIKLHDTAGMRR 241

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTK 328
               DD +EK  +      V  A+++++L +      K++++       +    +    K
Sbjct: 242 RARIDDKLEKLAVSDGLRAVRFAEVVVVLLDATIPFEKQDLTIVDLVESEGRALVIGLNK 301

Query: 329 SDLYS 333
            DL +
Sbjct: 302 WDLVA 306


>gi|241896284|ref|ZP_04783580.1| GTP-binding protein EngA [Weissella paramesenteroides ATCC 33313]
 gi|241870525|gb|EER74276.1| GTP-binding protein EngA [Weissella paramesenteroides ATCC 33313]
          Length = 436

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +A   ++IV D PG TRD +    +   +  ++ DT GI   D
Sbjct: 6   VAVVGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTRAEWLTHEFRLIDTGGIDMGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           +    + +++  + ++ AD+I+ +               +I +      +    K D   
Sbjct: 66  EPFMSQIVQQAEIAIDEADVIVFMVSAREGLTEADERVAKILYRSKKPVVLAVNKVDNIE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +E Y+           IS   G GL +L++++ +       +      
Sbjct: 126 LRSEIYEFYALGFGDPYPISGAHGTGLGDLLDQVVANFPEIEAQEEDDAV 175



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 21/171 (12%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + ++  + +  E   +  +   +G  N GKSSL NA+  ++  IV+DI GTTRD 
Sbjct: 154 DLLDQVVANFPEIEAQEED-DAVRFSFIGRPNVGKSSLVNAILGEERVIVSDISGTTRDA 212

Query: 258 LTIDLDLE-GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +        G    + DTAGIR+   +    EK  + R    +++++++L++  +N+++ 
Sbjct: 213 IDTRFTSAYGDEFVMVDTAGIRKRGKVYESTEKYSVMRAMRAIDDSNVVLVV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           I          +       I +  K D      E+ +H ++ F  +  +E 
Sbjct: 271 IREQDKHVAGYAHEAGRAVIIVVNKWD----TLEKDNHTMADFENQIRQEF 317


>gi|209521123|ref|ZP_03269851.1| small GTP-binding protein [Burkholderia sp. H160]
 gi|209498433|gb|EDZ98560.1| small GTP-binding protein [Burkholderia sp. H160]
          Length = 445

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--ARQDISDQDAHIAGFVVEQGRALVVG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  E                  H IS+    G+  L+  +    +    KL
Sbjct: 297 VNKWDGLDPHVRERTKADLERKLKFLDFAKFHFISAAEKTGIGPLMRSVDDAYTAAMSKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRAGERPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE +D+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEESDVVVFIVDGRNGLAPQDKSIADYLRKVGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
                  D           IS+  G+G+ ++IN+   +    
Sbjct: 125 KYANVAADFYELGLGDPRAISAAHGDGVTDMINEALEVAYAG 166


>gi|313904194|ref|ZP_07837573.1| ribosome-associated GTPase EngA [Eubacterium cellulosolvens 6]
 gi|313470996|gb|EFR66319.1| ribosome-associated GTPase EngA [Eubacterium cellulosolvens 6]
          Length = 443

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + SH  +G       +  KI I+G  N GKSS+ N L   +  IV+DI GTTRD 
Sbjct: 156 DLLDVVISHFPEGAGENEEDDNPKIAIVGKPNVGKSSIINKLLGTNRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI------ 308
           +   +   G      DTAG+R    I    E+  I RT   VE  D+ +++ +       
Sbjct: 216 IDTVIKRNGKDYTFIDTAGLRRKSKIKEELERYSIVRTVAAVERCDIAVVVIDAVEGITE 275

Query: 309 -NSK-KEISFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
            ++K   I+  +    I    K D      +                       IS+ TG
Sbjct: 276 QDAKIAGIAHDRGKGLIIAVNKWDAIEKDDKTQKKFSEKVKATLSFADYAEIIYISAATG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + I+ +L ++  ++   + +
Sbjct: 336 QRLPKLFDTIEQVLESQNLRVQTGVLN 362



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+    +   + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGERISIVKDTPGVTRDRIYADVTWLNHEFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            DI+ K+  ++  + +E AD+I+ + ++             +        +    K D  
Sbjct: 66  SDIILKQMREQAVIAMETADVIIFITDVRQGLVDADLQVATMLRKSKKPVVLAVNKVDDF 125

Query: 331 ------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 +Y  Y       H IS+    GL +L++ + S       +    
Sbjct: 126 KTQEIGIYEFYNLGIGEPHAISAEGKMGLGDLLDVVISHFPEGAGENEED 175


>gi|49475207|ref|YP_033248.1| GTP-binding protein EngA [Bartonella henselae str. Houston-1]
 gi|81696225|sp|Q6G5J7|DER_BARHE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|49238012|emb|CAF27217.1| GTP-binding protein [Bartonella henselae str. Houston-1]
          Length = 475

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 77/202 (38%), Gaps = 22/202 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS+LFN L  + +A+V D PG TRD       L+     + DTAG+ E
Sbjct: 3   LTIAIVGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRRVHAATLQDLRFDVIDTAGLEE 62

Query: 280 TDD-IVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
           T D  +E      T   ++ ADLIL + +  S           +        + +  KS+
Sbjct: 63  TGDHTLEGRMRAHTKAAIDEADLILFVFDAKSGITPSDLNFASLVRKSGKPIVLVANKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
             +    EY+           IS+  G GL +L + I                 ++    
Sbjct: 123 SKAAIGGEYEAWSLGLGEPCSISAEHGLGLSDLRDAI----MKASGGERIFASKNQEEHI 178

Query: 382 HLSQTVRYLEMASLNEKDCGLD 403
            L        + +L EK    D
Sbjct: 179 ALQSASLDDYIDNLEEKGDVYD 200



 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 11/126 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I + G  N GKS+L N +  +D  +     G TRD +++D +  G  +K+ DTAG+R 
Sbjct: 205 LRIAVAGRPNTGKSTLINRMLGQDRLLTGPEAGLTRDSISVDWEWRGRHIKLFDTAGLRR 264

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              I    EK  +  T   +  A++++++ +  +  E        +   +    +    K
Sbjct: 265 KSKIQEKLEKLSVADTLRAIRFAEVVVIVFDATTPFEKQDLQIADLVIREGRVPLIAFNK 324

Query: 329 SDLYST 334
            DL   
Sbjct: 325 WDLIEN 330


>gi|87125615|ref|ZP_01081460.1| putative GTP-binding protein [Synechococcus sp. RS9917]
 gi|86166915|gb|EAQ68177.1| putative GTP-binding protein [Synechococcus sp. RS9917]
          Length = 455

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + + +             ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD 
Sbjct: 156 ELLDQVLTFLPPKDQEGDEAEPIQMAIIGRPNVGKSSLLNAICGEPRAIVSPIRGTTRDT 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI---NSK 311
           +   L+  G   ++ DTAGIR    +    E  GI R+F  +E +D+ +L+ +     ++
Sbjct: 216 IDTRLERNGLSWRLVDTAGIRRRRSVHYGPEFFGINRSFKAIERSDVCVLVIDALDGVTE 275

Query: 312 KEISFP-----KNIDFIFIGTKSDLYST 334
           ++         +    + +  K D    
Sbjct: 276 QDQRLAGRIEEEGRACVVVVNKWDAVEK 303



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 19/175 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQDGYWGDREFKLVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           D     E  ++  L +  A + +++ +          S  E    +    +    K +  
Sbjct: 66  DSEFLPEIREQASLAMAEASVAVVIVDGQQGVTAADESIAEWLRSQACPTLLAVNKCESP 125

Query: 333 ST----------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                             + IS+  G G  EL++++ + L  K ++   + P   
Sbjct: 126 EQGLAMAAEFWGLGLGEPYPISAIHGAGTGELLDQVLTFLPPKDQEGDEAEPIQM 180


>gi|328949043|ref|YP_004366380.1| GTP-binding protein engA [Treponema succinifaciens DSM 2489]
 gi|328449367|gb|AEB15083.1| GTP-binding protein engA [Treponema succinifaciens DSM 2489]
          Length = 517

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 107/284 (37%), Gaps = 31/284 (10%)

Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            E E L  L+ S ++    +++    G  +              ++      F +   + 
Sbjct: 162 SEDEELIHLLRSYSDK-LIVAVNKTEGGKN-----------EHLAYNYMKYGFKDISLIS 209

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
            F    +      +   +    S+   G       +I ILG  N GKS+L NAL   + +
Sbjct: 210 AFHGDGLNVLQEKMIEGLD--FSKVTEGSEEERPIRIAILGKPNVGKSTLSNALTHTESS 267

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLI 302
           IV+D  GTTRDV+       G+ ++I DTAGIR    +    E   + R    ++  D+ 
Sbjct: 268 IVSDYAGTTRDVVEGSFRYNGHDIQILDTAGIRRKSKVKENVEYYSVNRAIKTLDECDIA 327

Query: 303 LLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
            ++ +              ++F +    +FI  K DL     E+  +     T E ++ +
Sbjct: 328 FIMIDAVEGLAEQDKKITGLAFERGRGVVFILNKWDLL----EDQGNKTVKKTKEWIQTM 383

Query: 355 INKIKS--ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
             ++    I+    K            L   SQ  R ++ ASLN
Sbjct: 384 FGQMNWAPIIPLSAKNHDGIKNLMDTALEIYSQLTRKVDTASLN 427



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 26/197 (13%)

Query: 190 KEVLNDILFLKNDISSHISQGKLG----EIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           ++   +   +K +I S   +         I  N   IVI G  N GKS+LFNAL     A
Sbjct: 29  EKKDEENSSVKKEIESRRKERSQKFFPDRIYNNLPLIVIAGRPNVGKSTLFNALTHTKRA 88

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG------IKRTFLEVENA 299
           I    PG TRD +     L G  V + DT G + T ++  +E       +++T    + A
Sbjct: 89  ITDPTPGVTRDPVEGTCFLSGLPVHLMDTGGYKLTRNLKSRESEMDDLVVEKTVSMFQKA 148

Query: 300 DLILLLKEIN-----SKKEISFPKNIDFIFI--GTKSDLYSTYTEEYDHL---------I 343
           D ILLL +        ++ I   ++     I    K++        Y+++         I
Sbjct: 149 DKILLLLDATEINSEDEELIHLLRSYSDKLIVAVNKTEGGKNEHLAYNYMKYGFKDISLI 208

Query: 344 SSFTGEGLEELINKIKS 360
           S+F G+GL  L  K+  
Sbjct: 209 SAFHGDGLNVLQEKMIE 225


>gi|238852698|ref|ZP_04643108.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 202-4]
 gi|282852069|ref|ZP_06261427.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 224-1]
 gi|238834844|gb|EEQ27071.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 202-4]
 gi|282556829|gb|EFB62433.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 224-1]
          Length = 435

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 110/292 (37%), Gaps = 47/292 (16%)

Query: 131 LADLISSETEMQRRLS--------MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           + + I ++ E+    +        +      +     + + +            D  E+ 
Sbjct: 68  IEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLYRTKKPIILAVNKADNPEQR 127

Query: 183 DVQNFSSKEVLNDILFLK--------NDISSHISQG--KLGEIIRNGYKIVILGHSNAGK 232
                     L D + +         + + + + +   K  +   +  +  ++G  N GK
Sbjct: 128 TDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGDKANQHEDDSIRFSVIGRPNVGK 187

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGI 289
           SSL NA+  +   IV++I GTTRD +      +G    I DTAGIR    +    EK  +
Sbjct: 188 SSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKVYEKTEKYSV 247

Query: 290 KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY--------- 332
            R    +E +D+ LL+ + ++            +       I +  K DL          
Sbjct: 248 LRAISAIEESDITLLVLDASTGIREQDKHVAGYAHDAGRGVIIVVNKWDLPKKDSTSMKD 307

Query: 333 --STYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
              T  +E+ +        +S+ TG+ + +++  +K +  N+ +++  S+ +
Sbjct: 308 FEDTIRQEFQYLDYAPIVFVSAKTGQRVPDILKLVKEVHDNQTRRIKSSVLN 359



 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D  G TRD +    +  G+   + DT GI    
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLDS 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +E++   +  + ++ AD+I++L ++            ++ +      I    K+D   
Sbjct: 66  GEIEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLYRTKKPIILAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             T+ YD           +S   G G+ +L++ I     +K  +      
Sbjct: 126 QRTDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGDKANQHEDDSI 175


>gi|238027075|ref|YP_002911306.1| GTP-binding protein EngA [Burkholderia glumae BGR1]
 gi|237876269|gb|ACR28602.1| GTPase family protein [Burkholderia glumae BGR1]
          Length = 448

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GVKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--AQQDISDQDAHIAGFVVEQGRALVVG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D   ++  E                  H IS+    G+  L+  +    +   KKL
Sbjct: 297 VNKWDGLDSHARERTKADLTRKLKFLEFAKFHFISAAEKTGIGPLLRSVDDAYAAAMKKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 18/174 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGARPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                  D           IS+  G+G+ ++IN+   +      +        +
Sbjct: 125 KYTAVAADFYELGLGDPRAISAAHGDGVTDMINEALEVAYAGQPEESEDAAQSR 178


>gi|170757031|ref|YP_001782064.1| GTP-binding protein EngA [Clostridium botulinum B1 str. Okra]
 gi|229710728|sp|B1IIN2|DER_CLOBK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169122243|gb|ACA46079.1| ribosome-associated GTPase EngA [Clostridium botulinum B1 str.
           Okra]
          Length = 439

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 98/258 (37%), Gaps = 29/258 (11%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  M  +        ++K+  ++    A   ++         S      +  + + +  +
Sbjct: 104 VAQMLRKSKKPVVLVVNKIDKLKDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEY 163

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
               +L         I  +G  N GKSSL N L  ++  IV+DIPGTTRD +   +D E 
Sbjct: 164 FKDDELDGEEDERINIAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTEF 223

Query: 267 YLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----- 318
               + DTAG+R      + +E+  + RT+  +E AD+ +L+ +          K     
Sbjct: 224 GEFTLIDTAGLRRKSKVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQKIIGYA 283

Query: 319 ---NIDFIFIGTKSDLYSTYTEEYDH------------------LISSFTGEGLEELINK 357
              N   + I  K DL     +  D                    IS+ TG+ + +++  
Sbjct: 284 HDINKAILVIVNKWDLVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQRVVKVLQT 343

Query: 358 IKSILSNKFKKLPFSIPS 375
            K    N  K++   + +
Sbjct: 344 AKECYDNYTKRVKTGVLN 361



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D PG TRD +  + +   Y   + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           +DI+  +  ++  + +E A++I+ L +       + +E++          + +  K D  
Sbjct: 66  EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADEEVAQMLRKSKKPVVLVVNKIDKL 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
                 Y+            SS    GL ++++++    
Sbjct: 126 KDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEYF 164


>gi|50365015|ref|YP_053440.1| GTP-binding protein EngA [Mesoplasma florum L1]
 gi|81695689|sp|Q6F1R7|DER_MESFL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|50363571|gb|AAT75556.1| GTP-binding protein, cell cycle control [Mesoplasma florum L1]
          Length = 435

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 13/152 (8%)

Query: 201 NDISSHISQGKLGEIIR--NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           + +   I Q    E I   N  ++ I+G  N GKSSL N+L  ++  IV+DIPGTT D +
Sbjct: 154 DLLDDIIHQMPSHEEINKDNRTRVSIIGRPNVGKSSLVNSLIGEERMIVSDIPGTTLDAV 213

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK---- 311
              + +      + DTAGIR+   I    EK    R+   +  +D++LL+ + +      
Sbjct: 214 DSVVKVNNIEYTLIDTAGIRKKSKIFQNVEKYSYLRSLTTINGSDVVLLMLDASVPISDL 273

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEY 339
                 ++F +    I I  K DL     +E 
Sbjct: 274 DTNIGGLAFEEKKPIIIIANKWDLVENKEKEI 305



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 17/163 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN + ++  +IV D PG TRD +    +       + DT GI   D
Sbjct: 6   VAIVGRPNVGKSSLFNRIIREKKSIVEDTPGVTRDRIYGTAEWLTREFIVIDTGGITLED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
               KE   +  + +E AD+I+ L               +I +      +    K D  +
Sbjct: 66  QPFAKEIKVQAEIAMEEADVIVFLLNHQEGLSDEDKMIAKILYKTKKPIVLAVNKYDKKT 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFK 367
           +  ++Y+++         IS+  G G  +L++ I   + +  +
Sbjct: 126 SDFDQYEYMSLGFGEPILISATHGIGTGDLLDDIIHQMPSHEE 168


>gi|295676899|ref|YP_003605423.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1002]
 gi|295436742|gb|ADG15912.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1002]
          Length = 445

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--ARQDISDQDAHIAGFVVEQGRALVVG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  E                  H IS+    G+  L+  +    +    KL
Sbjct: 297 VNKWDGLDPHVRERTKADLERKLKFLDFAKFHFISAAEKTGIGPLMRSVDDAYTAAMSKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 67/168 (39%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE +D+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEESDVVVFIVDGRNGLAPQDKSIADYLRKVGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D           IS+  G+G+ ++IN+   +      +   
Sbjct: 125 KYTNVAADFYELGLGDPRAISAAHGDGVTDMINEALEVAYAGQPEESE 172


>gi|261400171|ref|ZP_05986296.1| ribosome-associated GTPase EngA [Neisseria lactamica ATCC 23970]
 gi|269210170|gb|EEZ76625.1| ribosome-associated GTPase EngA [Neisseria lactamica ATCC 23970]
          Length = 485

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  DI     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 155 LIEDILETFPEPEKEEEAAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDISRKLYFLDFAKFHFISALKERGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 335 DGLFDSIQAAYNAAMIKMPTPKITR 359



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                +  +        ++IS   G+G+  LI  I    
Sbjct: 125 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETF 163


>gi|300361577|ref|ZP_07057754.1| ribosome-associated GTPase EngA [Lactobacillus gasseri JV-V03]
 gi|300354196|gb|EFJ70067.1| ribosome-associated GTPase EngA [Lactobacillus gasseri JV-V03]
          Length = 435

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 110/292 (37%), Gaps = 47/292 (16%)

Query: 131 LADLISSETEMQRRLS--------MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           + + I ++ E+    +        +      +     + + +            D  E+ 
Sbjct: 68  IEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLYRTKKPIILAVNKADNPEQR 127

Query: 183 DVQNFSSKEVLNDILFLK--------NDISSHISQG--KLGEIIRNGYKIVILGHSNAGK 232
                     L D + +         + + + + +   K  +   +  +  ++G  N GK
Sbjct: 128 TDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGNKANQHEDDSIRFSVIGRPNVGK 187

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGI 289
           SSL NA+  +   IV++I GTTRD +      +G    I DTAGIR    +    EK  +
Sbjct: 188 SSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKVYEKTEKYSV 247

Query: 290 KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS-------- 333
            R    +E +D+ LL+ + ++            +       I +  K DL          
Sbjct: 248 LRAISAIEESDITLLVLDASTGIREQDKHVAGYAHDAGRGVIIVVNKWDLPKKDSTSMKD 307

Query: 334 ---TYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
              T  +E+ +        +S+ TG+ + +++  +K +  N+ +++  S+ +
Sbjct: 308 FENTIRQEFQYLDYAPIVFVSAKTGQRVPDILKLVKEVHDNQTRRIKSSVLN 359



 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D  G TRD +    +  G+   + DT GI    
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLDS 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +E++   +  + ++ AD+I++L ++            ++ +      I    K+D   
Sbjct: 66  GEIEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLYRTKKPIILAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             T+ YD           +S   G G+ +L++ I     NK  +      
Sbjct: 126 QRTDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGNKANQHEDDSI 175


>gi|254480079|ref|ZP_05093327.1| putative GTPase [marine gamma proteobacterium HTCC2148]
 gi|214039641|gb|EEB80300.1| putative GTPase [marine gamma proteobacterium HTCC2148]
          Length = 417

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 114/281 (40%), Gaps = 31/281 (11%)

Query: 127 EAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           EA+++  L+ +   +     ++     + +  +   ++K+  + + I +   ++   +  
Sbjct: 29  EADAVLFLVDAREGLNPADQALAKHLRQRNKSFHLVVNKIDGLDADIASSDFYALGVESM 88

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGE---IIRNGYKIVILGHSNAGKSSLFNALAKK 242
              +      +  +  ++ ++  + +  E      N  ++ ++G  N GKS+L N L  +
Sbjct: 89  FAIAASHGRGVRNMIGEVMANFPEEERTEEDEAYPNSTRVAVVGRPNVGKSTLVNRLLGE 148

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENA 299
           D  +V D PGTTRD + ID   +     + DTAG+R   ++    EK  I +T   +++A
Sbjct: 149 DRVVVFDEPGTTRDSIYIDYQRDEQEYTLIDTAGVRRRKNVKQTVEKFSIVKTLKAIDDA 208

Query: 300 DLILLLKEINS---KKEISF-----PKNIDFIFIGTKSDLYSTYTEEYD----------- 340
            +++L+ + +     +++        K    +    K D       ++            
Sbjct: 209 HVVILVMDAHEGIVDQDMHLLGHCIEKGRGLVLAVNKWDGIEPDQRDWIKSELGRRLAFA 268

Query: 341 -----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                H IS+  G G+  L   I +   +  ++L  +  + 
Sbjct: 269 DFADTHFISALHGTGVGHLYKSINAAFESATRELSTNALTR 309



 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 13/90 (14%)

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDF 322
           + DT GI   +D ++ E   ++ + +E AD +L L +        + +  K     N  F
Sbjct: 2   VIDTGGISGDEDGIDSEMADQSLVAIEEADAVLFLVDAREGLNPADQALAKHLRQRNKSF 61

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
             +  K D       + D   S F   G+E
Sbjct: 62  HLVVNKID-----GLDADIASSDFYALGVE 86


>gi|149926362|ref|ZP_01914623.1| GTP-binding protein EngA [Limnobacter sp. MED105]
 gi|149824725|gb|EDM83939.1| GTP-binding protein EngA [Limnobacter sp. MED105]
          Length = 441

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 12/184 (6%)

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS-SHISQGKLGEIIRNGYKIVILGHS 228
           +   A  DF E    +  +      D +    DI+   +      E      K+ I G  
Sbjct: 125 THSMAAADFFELGLGEPETISASHGDGVRQLMDIACEKLPVLPEDEAGGRRIKVAIAGRP 184

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---E 285
           N GKS++ N L  ++  I  D+PGTTRD + ID +       + DTAG+R+   +    E
Sbjct: 185 NVGKSTMVNTLLGEERVIAFDLPGTTRDSIYIDFERNDKPYTLIDTAGLRKRGKVFESVE 244

Query: 286 KEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTE 337
           K  + +T   +E+A++++L+ +     S ++ S            +    K D    Y +
Sbjct: 245 KFSVIKTLQAIEDANVVILMLDAQQDISDQDASIAGFIVEAGRSLVLAVNKWDSLDDYRK 304

Query: 338 EYDH 341
           E   
Sbjct: 305 ERIK 308



 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 20/154 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V + PG TRD       +      + DT G+    
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVANQPGLTRDRHYGVGRIGPREYLVVDTGGLEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
            D +  E  K++   +  +DL+L L +                     + I +  K    
Sbjct: 65  KDGIYAEMAKQSRQAIVESDLVLFLVDGRQGVTPHDHVIAAELRKAKREVILVVNKTEGY 124

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELIN 356
                 +D +     E +  IS+  G+G+ +L++
Sbjct: 125 THSMAAADFFELGLGEPE-TISASHGDGVRQLMD 157


>gi|149908865|ref|ZP_01897525.1| GTP-binding protein EngA [Moritella sp. PE36]
 gi|149808139|gb|EDM68080.1| GTP-binding protein EngA [Moritella sp. PE36]
          Length = 493

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 27/187 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   K+ ++G  N GKS+L N +  ++  +V D+PGTTRD + I ++  G    + DTAG
Sbjct: 203 RLPIKLAMIGCPNVGKSTLVNRILGEERVVVYDMPGTTRDSIYIPMERAGRNYMLIDTAG 262

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFI 325
           +R   +I    EK  I +    +++A+++L++ +     + ++++            +  
Sbjct: 263 VRRRKNINEAVEKFSIVKALQAIDDANVVLMVLDARVGVTSQDLTLLGFAINSGRSIVIA 322

Query: 326 GTKSD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D     +      E D           H IS+  G G+  L   I     +  K++
Sbjct: 323 INKWDGLDAGVKDRIKSELDRRLGFIDFARIHFISALHGTGVGNLFESITEAFDSSTKRV 382

Query: 370 PFSIPSH 376
             S+ + 
Sbjct: 383 STSMLTR 389



 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD      +L G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANLAGREFIVVDTGGINGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + ++ +   ++ L +E AD +L + +  +          E    +      +  K D   
Sbjct: 65  EGIDAKMADQSLLAIEEADAVLFMVDARAGLMVADQAIAEHLRKQQKKVFLVANKVDGLD 124

Query: 334 ---------TYTEEYDHLISSFTGEGLEELINK 357
                           + I++  G G+  LI +
Sbjct: 125 GDVAVAEFYALALGDIYQIAASQGRGINILIEE 157


>gi|16079341|ref|NP_390165.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310200|ref|ZP_03592047.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221314523|ref|ZP_03596328.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221319445|ref|ZP_03600739.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323721|ref|ZP_03605015.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|321311754|ref|YP_004204041.1| GTP-binding protein Der [Bacillus subtilis BSn5]
 gi|1730915|sp|P50743|DER_BACSU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|1146219|gb|AAC83966.1| similar to Escherichia coli GTP-binding protein Era; putative
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634702|emb|CAB14200.1| GTPase essential for ribosome 50S subunit assembly [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|320018028|gb|ADV93014.1| GTP-binding protein Der [Bacillus subtilis BSn5]
          Length = 436

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 26/226 (11%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   T+    L++  +         +    +     +    L F 
Sbjct: 91  NGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT------EMRANI-----YDFYSLGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   +    L D   L + ++ H       +      +  ++G  N GKSSL NA+
Sbjct: 140 EPYPISG-THGLGLGD---LLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAM 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+++ GTTRD +            I DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 255

Query: 297 ENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST 334
           + ++++ ++ +     I   K I   +       + +  K D    
Sbjct: 256 DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 301



 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
                YD           IS   G GL +L++ +     N
Sbjct: 126 MRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 165


>gi|323342077|ref|ZP_08082310.1| ribosome-associated GTPase EngA [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464502|gb|EFY09695.1| ribosome-associated GTPase EngA [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 436

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 90/231 (38%), Gaps = 30/231 (12%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           ++   D     S E    +  L +++   + Q  +  +  +      +G  N GKSSL N
Sbjct: 134 YALGYDEPFAVSCEHGIGLGDLLDEVIKKLPQDGIT-MYEDELSFCAIGRPNVGKSSLVN 192

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFL 294
           A+  +D  IV++I GTTRD +     +      I DTAGIR+   +    EK  + R   
Sbjct: 193 AMLNQDRVIVSNIEGTTRDAIDTPFRMNERDYVIIDTAGIRKRGKVYEDVEKYSVLRAMS 252

Query: 295 EVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYST------------ 334
            ++ +D++L L +  +            +       I +  K D+               
Sbjct: 253 AIDRSDVVLFLIDGEAGIRAQDKHVVGFAHEAGKPIIIVYNKWDVVDKEETAMEDVKKVI 312

Query: 335 ------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  +      +S+ T + +  LI  I+ + +N  K++  S+ +   H
Sbjct: 313 RSEFMYLSYAPIVFVSALTRKRVHTLIPLIEDVHANSIKRISTSVINEVIH 363



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN +  + ++IV D  G TRD L          ++  DT GI+   
Sbjct: 6   VAIVGRPNVGKSSLFNRIMGERISIVHDEAGVTRDRLYGKTTWLTKDLRFIDTGGIQMEG 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK----- 328
              ++E   +  + ++ AD+IL +                +    N   I    K     
Sbjct: 66  QPFQEEIKMQVDIAIDEADIILFVVSAKEGMTTDDEFIARLLRQTNKPVIIAANKVDDVQ 125

Query: 329 --SDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKL 369
             SD+Y  Y   YD     S   G GL +L++++   L      +
Sbjct: 126 FVSDIYEFYALGYDEPFAVSCEHGIGLGDLLDEVIKKLPQDGITM 170


>gi|238794826|ref|ZP_04638427.1| GTP-binding protein engA [Yersinia intermedia ATCC 29909]
 gi|238725839|gb|EEQ17392.1| GTP-binding protein engA [Yersinia intermedia ATCC 29909]
          Length = 495

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 28/240 (11%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
           +L         D    E E     ++           + +    ++           K+ 
Sbjct: 153 QLIEDVMAPYMDAVEPEVELTDEEANAAYWAAQEAEDDAVPEDDAEDDFDPRTL-PIKLA 211

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-- 281
           I+G  N GKS+L N +  +D  +V D+PGTTRD + I +  +     + DTAG+R+    
Sbjct: 212 IVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKRGKI 271

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLY 332
            + VEK  + +T   +E+++++LL+ +     S +++S            +    K D  
Sbjct: 272 TETVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWDGM 331

Query: 333 STYTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           +                       H IS+  G G+  L   I+       K++  S+ + 
Sbjct: 332 TEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCSTKRVGTSLLTR 391



 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 20/200 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           D VE +   ++ L +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             T   D         H I++  G G+ +LI  + +   +  +  P    + +       
Sbjct: 125 PDTATADFYSLGLGEVHAIAASHGRGVTQLIEDVMAPYMDAVE--PEVELTDEEANAAYW 182

Query: 385 QTVRYLEMASLNEKDCGLDI 404
                 + A + E D   D 
Sbjct: 183 AAQEAEDDA-VPEDDAEDDF 201


>gi|255321133|ref|ZP_05362299.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens SK82]
 gi|262380178|ref|ZP_06073333.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens
           SH164]
 gi|255301687|gb|EET80938.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens SK82]
 gi|262298372|gb|EEY86286.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens
           SH164]
          Length = 469

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 112/277 (40%), Gaps = 36/277 (12%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 73  EQSKTAIHEADLIIFVVDARAGLLASDEQIARELRTL-GKKVFLVANKVDGVHAEAAVVE 131

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
              L   E   V     + V   +  +  D+    +  +  +    G ++ I+G  N GK
Sbjct: 132 FYKLGLGEPMHVAASHGRGVAQMLEEVLADVPEDENPEEHDKAT--GLRLAIIGRPNVGK 189

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGI 289
           S+L N L  ++  +  D PGTTRD + I  + +G    + DTAG+R     D+++EK  +
Sbjct: 190 STLVNRLLGEERVVAYDEPGTTRDSVYIPFERDGRQYTLIDTAGVRRKGKVDEMIEKFSV 249

Query: 290 KRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEE--- 338
            +T   +++A +++++ +      ++++     +       +    K D  S Y  +   
Sbjct: 250 VKTLQAMKDAHVVVVVLDAREGVVEQDLHLIGYALEAGRAMVIAINKWDNMSEYDRKQCK 309

Query: 339 -------------YDHLISSFTGEGLEELINKIKSIL 362
                          HLIS+  G G+ +L   I    
Sbjct: 310 LDVDRRFDFIPWARIHLISALHGTGVGDLYPSIHRAY 346



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E++
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFIVVDTGGIGESE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
             ++    +++   +  ADLI+ + +  +    S  +              +  K D
Sbjct: 65  QGIDSYMAEQSKTAIHEADLIIFVVDARAGLLASDEQIARELRTLGKKVFLVANKVD 121


>gi|220935213|ref|YP_002514112.1| GTP-binding protein EngA [Thioalkalivibrio sp. HL-EbGR7]
 gi|254783176|sp|B8GTN1|DER_THISH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|219996523|gb|ACL73125.1| GTP-binding protein EngA [Thioalkalivibrio sp. HL-EbGR7]
          Length = 464

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 37/222 (16%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +N +  L  ++    ++ +       G +I  +G  NAGKS+L N +  ++  + T+IPG
Sbjct: 155 MNAVHALLPEVEEIQAEAER----WPGIRIAFVGRPNAGKSTLINRILGEERVVATEIPG 210

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN 309
           TTRD + I  + +G    + DTAG+R    +    EK  + +T   ++ A +++++ +  
Sbjct: 211 TTRDSIFIPFERDGQQYTLIDTAGVRRRSRVHEAIEKFSVVKTLQAIDAAHVVVMVLDAR 270

Query: 310 SK--------KEISFPKNIDFIFIGTKSD-LYSTYTEEYDH---------------LISS 345
                       +        +    K D L     +   H                IS+
Sbjct: 271 EGISEQDAHLLGVVLDAGRALVVAINKWDGLDPDQRDRIRHELDLKLPFLDFAEKRFISA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
             G G+ +L   +K    + F K+  +      HL  L ++ 
Sbjct: 331 LHGTGVGDLFAHVKRAYDSAFIKVSTN------HLTKLLESA 366



 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD       + G+   + DT G+    
Sbjct: 5   IALVGRPNVGKSTLFNQLTRSRDALVADFPGLTRDRQYGPGRVGGFPYMVVDTGGLSGEA 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEISFP---KNIDFIFIGTKSDLYS 333
           + ++    ++T   ++ +D++L L +       + + I+     +    + +  K+D   
Sbjct: 65  ETLDNLMARQTQQAIDESDVVLFLVDGREGLTAADQAIARSLRTQGKKVLLVVNKTDGVD 124

Query: 334 ---------TYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                             I++  G G+  L+N + ++L  
Sbjct: 125 ADQAMAEFHALGFGAPIPIAATHGRGVLGLMNAVHALLPE 164


>gi|261345330|ref|ZP_05972974.1| ribosome-associated GTPase EngA [Providencia rustigianii DSM 4541]
 gi|282566664|gb|EFB72199.1| ribosome-associated GTPase EngA [Providencia rustigianii DSM 4541]
          Length = 491

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 83/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  +D  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 205 IKLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDEREYILIDTAGVRK 264

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                + VEK  + +T   +E+A+++LL+ +     S +++S            +    K
Sbjct: 265 RGKVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNAGRSLVIAVNK 324

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D       ++                 H IS+  G G+  L   ++    +  +++  +
Sbjct: 325 WDGMKPEDRDHVKDMLELRLGFVDFARIHFISALHGSGVGNLFESVQEAYESATRRVGTA 384

Query: 373 IPSH 376
           + + 
Sbjct: 385 LLTR 388



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG+   I DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + VE     ++   +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  EGVETHMAAQSLQAIEEADVVLFMVDARAGLMPADEGIAKHLRSRKKKTYLVANKTDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINK 357
                 D           I++  G G+ +LI  
Sbjct: 125 ANIVVGDFYSLGLGEIYPIAASHGRGVTQLIEH 157


>gi|34498989|ref|NP_903204.1| GTP-binding protein EngA [Chromobacterium violaceum ATCC 12472]
 gi|41017007|sp|Q7NS92|DER_CHRVO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|34104839|gb|AAQ61196.1| probable GTP-binding protein [Chromobacterium violaceum ATCC 12472]
          Length = 469

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 102/277 (36%), Gaps = 41/277 (14%)

Query: 127 EAESLADLISSE---TEMQRRLS--MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           EA+++  L+      T   + ++  +  +   +     +             A  +F E 
Sbjct: 82  EADAVVFLVDGRAGLTPQDKIIANRLRQLDRPVFLAVNK-----AEGMKHAIAGAEFHEL 136

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
              +             ++  +   +     ++ E      K  ++G  N GKS+L NA+
Sbjct: 137 ALGEPLVI--SAAHGDGVRELMELVLEGFPDEVEEEDSRHPKFAVIGRPNVGKSTLVNAI 194

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEV 296
             ++  I  D  GTTRD + ID + EG+   I DTAG+R   + ++++EK  + +T   +
Sbjct: 195 LGEERVIAFDQAGTTRDSIYIDFEREGHTYTIIDTAGVRRRAKVNEMLEKFSVIKTMKAI 254

Query: 297 ENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-------- 340
           E+A++ +L+ +          +    +       +    K D      +E          
Sbjct: 255 EDANVAVLVLDAQLDISEQDATIAGFALEAGRALVVAVNKWDNLDGEQKENVRREIARKL 314

Query: 341 --------HLISSFTGEGLEELINKIKSILSNKFKKL 369
                   H IS+  G G+ +L   I         KL
Sbjct: 315 NFLDFAKFHYISAIEGRGVADLFKSIDEAYRAAMSKL 351



 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       +      + DT G     
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRHYGQGRVGEKPYLVVDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTKSDLY 332
           D+ +  E  K+T   V+ AD ++ L +  +    ++          +        K++  
Sbjct: 65  DEGILFEMAKQTLQAVDEADAVVFLVDGRAGLTPQDKIIANRLRQLDRPVFLAVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  +           IS+  G+G+ EL+  +     ++ ++   
Sbjct: 125 KHAIAGAEFHELALGEPLVISAAHGDGVRELMELVLEGFPDEVEEEDS 172


>gi|52841771|ref|YP_095570.1| GTP-binding protein EngA [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|81823403|sp|Q5ZV99|DER_LEGPH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|52628882|gb|AAU27623.1| GTP-binding protein EngA [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 462

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/299 (20%), Positives = 109/299 (36%), Gaps = 40/299 (13%)

Query: 120 NGKIDLLEAESLADLISSET-----EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
             ++ L EA  +  L+   +     + Q   ++   + ++  +  +     T   +   A
Sbjct: 74  QSQVALNEANVILFLVDGRSGLTGIDQQIAQALRKFNKKVHLVVNK-----TDGMNEDIA 128

Query: 175 DLDFSEEEDVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
             DF         +        I  L  +I    +            KI   G  N GKS
Sbjct: 129 CADFQSLGITDIHAISASHGGGISSLLEEILEPFTTETHEATDDKAIKIAFAGRPNVGKS 188

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIK 290
           +L N +  ++  +V D+PGTTRD ++I    E     + DTAG+R     D+ +EK  + 
Sbjct: 189 TLINRILGEERVVVYDMPGTTRDSISIPFTREDKQYVLIDTAGVRRKSRIDEKIEKFSVI 248

Query: 291 RTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSD-LYSTYTEEY-- 339
           +T   ++ A + LLL + N   + ++++            +    K D L   + E+   
Sbjct: 249 KTLQAIKEAHVCLLLLDANEGITDQDMNLLGFIIESGKALVIAVNKWDGLEEDHKEKIKS 308

Query: 340 -------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
                           IS+  G G+  L   I     +  +   FS P   R L  +S 
Sbjct: 309 ELSRRLHFANFAKIRFISALHGSGVGGLFKDINEAYHSAIQS--FSTPKLTRLLQDISA 365



 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 17/156 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D PG TRD        E     I DT GI   D
Sbjct: 5   IALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGIGVDD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPK---NIDFIFIGTKSDLYS 333
             V+    +++ + +  A++IL L +  S      ++I+      N     +  K+D  +
Sbjct: 65  IEVDTLMSRQSQVALNEANVILFLVDGRSGLTGIDQQIAQALRKFNKKVHLVVNKTDGMN 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKS 360
                 D         H IS+  G G+  L+ +I  
Sbjct: 125 EDIACADFQSLGITDIHAISASHGGGISSLLEEILE 160


>gi|121593586|ref|YP_985482.1| GTP-binding protein EngA [Acidovorax sp. JS42]
 gi|166224299|sp|A1W581|DER_ACISJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|120605666|gb|ABM41406.1| small GTP-binding protein [Acidovorax sp. JS42]
          Length = 447

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 85/200 (42%), Gaps = 32/200 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +N  ++ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG
Sbjct: 177 KNVIRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQKFELIDTAG 236

Query: 277 IRETD---DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFI 325
           +R      + +EK  + +T   +E+A+++LLL +      +    I+          +  
Sbjct: 237 LRRKGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVIA 296

Query: 326 GTKSDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    Y  +                  H IS+   +G+  L + I     +  +K+
Sbjct: 297 VNKWDAVDDYGRQQLERSIETCLSFLKFAPLHFISAKKRQGIGPLWSSIIQAYKSANRKM 356

Query: 370 PFSIPSHKRHLYHLSQTVRY 389
           P  + +       L + V++
Sbjct: 357 PTPVLTR-----LLQEAVQF 371



 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 20/154 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD    +     +   + DT G   + 
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGRQGKHEYIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFL------------------EVENADLILLLKEINSKKEISFPKNIDF 322
              + +E  ++T                      ++ D+   L+ +     ++  K    
Sbjct: 65  SSGIYREMARQTQQAVAEADVVVFVVDVRGGLSAQDHDIANYLRRLGKPCVLAGNKAEGM 124

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                 ++ Y     E  H +S+  G+G+  L++
Sbjct: 125 QDSMHLAEFYELGLGEV-HPVSAAHGQGVRSLVD 157


>gi|315651881|ref|ZP_07904884.1| ribosome-associated GTPase EngA [Eubacterium saburreum DSM 3986]
 gi|315485883|gb|EFU76262.1| ribosome-associated GTPase EngA [Eubacterium saburreum DSM 3986]
          Length = 443

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 12/152 (7%)

Query: 198 FLKNDISSHISQ-GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + ++ H    G   E   +  +I I+G  N GKSS+ N L  ++  IV+DI GTTRD
Sbjct: 156 DLLDAVAVHFKSKGNESEEDDDRPRIAIVGKPNVGKSSIINRLTGQNRVIVSDIAGTTRD 215

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK-- 311
            +   +          DTAG+R    +   +E+  I RT   VE AD+++L+ + +    
Sbjct: 216 AIDTVVVNNKQEYIFIDTAGLRRKSKVKEDIERYSIIRTVTAVERADVVILVIDASEGVT 275

Query: 312 ------KEISFPKNIDFIFIGTKSDLYSTYTE 337
                   I+  +    I    K DL     +
Sbjct: 276 EQDAKIAGIAHDRGKGIIVAVNKWDLIEKNNK 307



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNA+A + ++IV D PG TRD +  D         + DT GI  E+
Sbjct: 6   VAIIGRPNVGKSTLFNAIAGEPISIVKDTPGVTRDRIYADCTWLDMNFTLIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY 332
            D++  +  ++  + +E AD+I+ + ++            ++        +    K D  
Sbjct: 66  SDVILSQMREQAEIAIETADVIVFITDVRQGLVDSDSKVCDMLRKSRKPVVLAVNKVDSI 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           + +  +              IS+ +  G+ +L++ +     +K  +    
Sbjct: 126 AKFGNDVYEFYNLGIGDPVAISAASRLGIGDLLDAVAVHFKSKGNESEED 175


>gi|118443488|ref|YP_878327.1| GTP-binding protein EngA [Clostridium novyi NT]
 gi|166224330|sp|A0Q125|DER_CLONN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|118133944|gb|ABK60988.1| GTP-binding protein engA [Clostridium novyi NT]
          Length = 438

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 96/255 (37%), Gaps = 38/255 (14%)

Query: 118 FENGKIDLLEAESL----ADLISSETEMQRRLSM------------EGMSGELSSLYGQW 161
           + N    +++   +     D+I ++   Q +L++            +    +        
Sbjct: 48  WLNNNFTIIDTGGIEPENDDIIVAQMRRQAQLAIEMADVVLFIVDGKQGLTDADREVAHM 107

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL-----------FLKNDISSHISQG 210
           + K +         +D  + +D         L D +            L +++     +G
Sbjct: 108 LRKASKSIVLAVNKIDRRQLDDNIYEFYNLGLGDPMPISASQGLGLGDLLDEVIEKFPEG 167

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
            + E      +I ++G  N GKSSL N +  ++  IV++IPGTTRD +   ++ E     
Sbjct: 168 NVEEEEDEYIRIAMIGRPNVGKSSLINKILGEEKHIVSNIPGTTRDAVDSYVETEEGKFV 227

Query: 271 ISDTAGIRETDDIVEK---EGIKRTFLEVENADLILLLKEINSKKEISFPK--------N 319
           + DTAG+R    I E+       RT   +ENAD+ +L+ +          +        N
Sbjct: 228 LIDTAGLRRKSKIKEQVERYSAVRTLASIENADVCILMIDATEDIAEQDERIIGYAHEIN 287

Query: 320 IDFIFIGTKSDLYST 334
              + I  K DL   
Sbjct: 288 KAILVIVNKWDLIEK 302



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 18/163 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D+PG TRD +  + +       I DT GI  E 
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAEAEWLNNNFTIIDTGGIEPEN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISF---PKNIDFIFIGTKSDLY 332
           DDI+  +  ++  L +E AD++L + +      ++ +E++      +   +    K D  
Sbjct: 66  DDIIVAQMRRQAQLAIEMADVVLFIVDGKQGLTDADREVAHMLRKASKSIVLAVNKIDRR 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKF 366
                 Y+            S+  G GL +L++++        
Sbjct: 126 QLDDNIYEFYNLGLGDPMPISASQGLGLGDLLDEVIEKFPEGN 168


>gi|217967546|ref|YP_002353052.1| small GTP-binding protein [Dictyoglomus turgidum DSM 6724]
 gi|217336645|gb|ACK42438.1| small GTP-binding protein [Dictyoglomus turgidum DSM 6724]
          Length = 436

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 11/171 (6%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               S     ++  L + I S I   +         K+  +G  N+GKSSL NAL  +D 
Sbjct: 143 PFPISALHKQNLYELLDLIISLIPAPEEVSSEDKSIKLAFVGRPNSGKSSLLNALIGRDR 202

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADL 301
           +IV++IPGTTRD + +  D  G    I DT G+R   + ++ +E+  +++T   +   D+
Sbjct: 203 SIVSEIPGTTRDAVDLIWDFNGKKYIIVDTPGLRRPAKVEEGLEELSVQKTLQTIRRIDI 262

Query: 302 ILLLKEIN-----SKKEISF---PKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
            +++ +++      +K I      K    + +  K+DL  +  E  +    
Sbjct: 263 AIMVIDLSVGIREQEKRILHYIEDKGKSCLIVFNKTDLIPSLKERREFEKI 313



 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 19/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS LFN +  ++ AIV D PG TRD L    + EG    + D+AG   TD
Sbjct: 8   VSIVGRPNVGKSVLFNRIVGEEKAIVADEPGVTRDPLVHLCEHEGKYFYLVDSAGWGLTD 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
           D+ E    ++    +  +DLIL + +  S+         +I        I +  K +   
Sbjct: 68  DLSEL-IQEKIQEVINISDLILFVVDGRSELTALDHEFVDILRKSGKRVILVVNKMEGRI 126

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                   ++         IS+   + L EL++ I S++ 
Sbjct: 127 DREEYLAPFTALGLGEPFPISALHKQNLYELLDLIISLIP 166


>gi|119505385|ref|ZP_01627459.1| predicted GTPase [marine gamma proteobacterium HTCC2080]
 gi|119458840|gb|EAW39941.1| predicted GTPase [marine gamma proteobacterium HTCC2080]
          Length = 472

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 28/204 (13%)

Query: 197 LFLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           L L   +   + Q    + + +   ++ ++G  N GKS+L N L  +D  +V D PGTTR
Sbjct: 152 LQLITSVIDALPQAAPADALNDPSIRVAVVGRPNVGKSTLVNRLLGEDRVVVFDKPGTTR 211

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINS-- 310
           D + I  +       + DTAG+R   ++    EK  I +T   +  A +++LL + +   
Sbjct: 212 DSVYIRYERHDQAYTLIDTAGVRRRKNVREVVEKFSIVKTLKAINEAHVVILLMDAHEGL 271

Query: 311 -KKEISFP-----KNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTG 348
            ++++             +    K D  ++   ++                 H IS+  G
Sbjct: 272 VEQDLHLLGQCIDAGRGLVVAINKWDGIASDERDWIRSELNRRLQFVDYADVHFISALHG 331

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
            G+  L   I          L  +
Sbjct: 332 TGVGHLYESIHQAHRAATTSLNTN 355



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 17/162 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V ++ G TRD    +  +      + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNQLTRSRDALVANLSGLTRDRKYGEGKIGDAPFIVIDTGGISGEE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
             ++     ++ + ++ AD++LLL +  +               ++  F  +  K D   
Sbjct: 65  LGIDAAMADQSRVAIDEADIVLLLVDGRAGLHPGDESLVSYLRQRSKPFHLVVNKIDGVG 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKF 366
                 D         H I++    G+ +LI  +   L    
Sbjct: 125 EDIAASDFYRLGCSQLHTIAASHNRGVLQLITSVIDALPQAA 166


>gi|319407564|emb|CBI81214.1| GTP-binding protein [Bartonella sp. 1-1C]
          Length = 477

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS+LFN L  + +A+V D PG TRD       L+     + DTAG+ E
Sbjct: 3   LTIAIVGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRRIHSAKLQDLHFDVIDTAGLEE 62

Query: 280 TDD-IVEKEGIKRTFLEVENADLILLLKEINS---KKEISF-----PKNIDFIFIGTKSD 330
            D+  +E     +T + ++ ADLIL + +  S   + ++ F           + +  KS+
Sbjct: 63  ADNHTLEGRMRAQTKIAIDEADLILFVLDAKSGITRSDLDFSSLIRKSGKPIVLVSNKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
                  EY+           IS+  G GL +L + I + +
Sbjct: 123 SKIAIAGEYEAWSLGLGEPCPISAEHGHGLSDLRDAIVAAI 163



 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 102/259 (39%), Gaps = 31/259 (11%)

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF-LKND 202
             +     GE   +  +    L+ +R  I A +   +  +++    K      +  + ++
Sbjct: 131 YEAWSLGLGEPCPISAEHGHGLSDLRDAIVAAIGADKVFNLRQEKEKTYTTTQISSISDN 190

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           I + + +  + +  +   +I ++G  N GKS+L N++ K+D  +     G TRD +++D 
Sbjct: 191 IDNTVEEDPVYD-EKKTIRIAVIGRPNTGKSTLINSMLKQDRLLTGPEAGITRDSISVDW 249

Query: 263 DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE------ 313
           +     +K+ DTAG+R    +    EK  +  +   +  A++++++ +  +  E      
Sbjct: 250 EWNNRRIKLFDTAGLRRKSKVQEKLEKLSVVDSLRAIRFAEIVVIVFDATTSFEKQDLQI 309

Query: 314 --ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT------------------GEGLEE 353
             +   +    I    K DL     E  + L    T                  G+G+ +
Sbjct: 310 SDLVIREGRVPIIAFNKWDLIENRHEALNTLYEKCTRLLPQVRGLRAVPLSGLYGQGINK 369

Query: 354 LINKIKSILSNKFKKLPFS 372
           L+  I  +     +++   
Sbjct: 370 LMENITMMHRVWNRRISTG 388


>gi|296314652|ref|ZP_06864593.1| ribosome-associated GTPase EngA [Neisseria polysaccharea ATCC
           43768]
 gi|296838560|gb|EFH22498.1| ribosome-associated GTPase EngA [Neisseria polysaccharea ATCC
           43768]
          Length = 485

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  DI     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 155 LIEDILETFPESEKEEEEAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFALEAGRALVVAVNKWDGISEEHREQIKRDISRKLYFLDFAKFHFISALKERGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 335 DGLFDSIQAAYNAAMIKMPTPKITR 359



 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 20/161 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                 ++ Y     E  H+IS   G+G+  LI  I     
Sbjct: 125 NRAVLAAEFYELALGE-PHVISGAHGDGVYYLIEDILETFP 164


>gi|238753871|ref|ZP_04615231.1| GTP-binding protein engA [Yersinia ruckeri ATCC 29473]
 gi|238707859|gb|EEQ00217.1| GTP-binding protein engA [Yersinia ruckeri ATCC 29473]
          Length = 496

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD      ++EG+   + DT GI  T+
Sbjct: 5   IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           D VE     ++ L +E AD++L + +       + + I+     +      +  K+D   
Sbjct: 65  DGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSRQKATFLVANKTDGME 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358
                 D         H I++  G G+ +LI ++
Sbjct: 125 PEAAAADFYSLGMGEVHPIAASHGRGVAQLIEEV 158



 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 94/241 (39%), Gaps = 28/241 (11%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKI 222
           +L         + +  E E  +  ++            D + +    +     R+   K+
Sbjct: 153 QLIEEVMAPYMEPEAPEVELTEEEANAAYWAAQEAEGQDPAEYEDPEEDDFDPRSLPIKL 212

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD- 281
            I+G  N GKS+L N +  ++  +V D+PGTTRD + I +  +     + DTAG+R+   
Sbjct: 213 AIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMIRDEREYILIDTAGVRKRGK 272

Query: 282 --DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDL 331
             + VEK  + +T   +E+++++LL+ +     S +++S            +    K D 
Sbjct: 273 VTETVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWDG 332

Query: 332 YSTYTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            +                       H IS+  G G+  L   I        K++  S+ +
Sbjct: 333 MTEEARTQVKDMLELRLGFVDFARIHFISALHGSGVGNLFESILEAYDCSTKRVGTSMLT 392

Query: 376 H 376
            
Sbjct: 393 R 393


>gi|154498134|ref|ZP_02036512.1| hypothetical protein BACCAP_02115 [Bacteroides capillosus ATCC
           29799]
 gi|150273124|gb|EDN00281.1| hypothetical protein BACCAP_02115 [Bacteroides capillosus ATCC
           29799]
          Length = 441

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 75/190 (39%), Gaps = 29/190 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +    +       E   +  K+ ++G  N GKSSL N +  ++  IV+++ GTTRD 
Sbjct: 155 DLLDACFQYFPPEDQVEEQDDVIKVAVIGKPNVGKSSLINRILGEERVIVSNMAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +    + +     + DTAG+R+    DD +EK  + R  + +E  D+ L++ +       
Sbjct: 215 IDSYYENDKGKYILIDTAGMRKKSKVDDRIEKFSVLRATMAIERCDVCLIMVDAQEGVTE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------------------SSFTG 348
                  ++       I +  K D      +  D +                   S+ TG
Sbjct: 275 QDTKVAGLAHEAGKACIIVVNKWDAIEKDDKTMDKMRQDVRRDLSYMTYAPILFISAKTG 334

Query: 349 EGLEELINKI 358
           + +E L   I
Sbjct: 335 QRVERLFELI 344



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS LFN L  + ++IV D PG TRD +  + +       I DT GI   T
Sbjct: 5   VAIVGRPNVGKSMLFNRLVGQRLSIVEDTPGVTRDRIYAECEWRNRKFDIVDTGGIEPNT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           D  +     ++  + + NAD+ + + +I S           +        +    K D  
Sbjct: 65  DSEILSFMREQAEIAIRNADVTVFVCDIKSGLTASDQEVANMLLRSGKPVVLAVNKMDQV 124

Query: 333 STYTEEY----------DHLISSFTGEGLEELINK 357
                +              +S+  G G  +L++ 
Sbjct: 125 GMTNPDIFEFYNLGLGDPIAVSAVHGHGTGDLLDA 159


>gi|52786163|ref|YP_091992.1| GTP-binding protein EngA [Bacillus licheniformis ATCC 14580]
 gi|163119516|ref|YP_079584.2| GTP-binding protein EngA [Bacillus licheniformis ATCC 14580]
 gi|319645250|ref|ZP_07999483.1| GTP-binding protein engA [Bacillus sp. BT1B_CT2]
 gi|81825274|sp|Q65I15|DER_BACLD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|52348665|gb|AAU41299.1| YphC [Bacillus licheniformis ATCC 14580]
 gi|145903023|gb|AAU23946.2| GTP-binding protein essential for cell growth [Bacillus
           licheniformis ATCC 14580]
 gi|317393059|gb|EFV73853.1| GTP-binding protein engA [Bacillus sp. BT1B_CT2]
          Length = 436

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 26/226 (11%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   T+    L++  +         +    +    +     L F 
Sbjct: 91  NGREGVTAADEEVAKILYRTKKPVVLAVNKVDNP------EMRANIYDFYA-----LGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   +    L D   L + +S H       +      +  ++G  N GKSSL NA+
Sbjct: 140 EPFPISG-THGLGLGD---LLDAVSEHFKNIPETKYEDEVVQFCLIGRPNVGKSSLVNAM 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV++I GTTRD +            I DTAG+R+   +    EK  + R    +
Sbjct: 196 IGEERVIVSNIAGTTRDAIDTRFTYNQRDFVIVDTAGMRKKGKVYEATEKYSVLRALKAI 255

Query: 297 ENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST 334
           + ++++ ++ +     I   K I   +       + +  K D    
Sbjct: 256 DRSEVVCVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVEK 301



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   +   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNHDFNLIDTGGIEVGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + +E AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLAQIRHQAEIAMEEADVIIFMTNGREGVTAADEEVAKILYRTKKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
                YD           IS   G GL +L++ +     N
Sbjct: 126 MRANIYDFYALGFGEPFPISGTHGLGLGDLLDAVSEHFKN 165


>gi|34558325|ref|NP_908140.1| GTP-binding protein EngA [Wolinella succinogenes DSM 1740]
 gi|41016995|sp|Q7M7W8|DER_WOLSU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|34484044|emb|CAE11040.1| PUTATIVE GTP-BINDING PROTEIN [Wolinella succinogenes]
          Length = 470

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 25/181 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  N GKSSL NAL   + ++V+D+ GTT D +   +++EG  V   DTAGIR 
Sbjct: 201 IRVGIIGKVNVGKSSLLNALLGSERSVVSDVAGTTIDPVDESMEIEGQKVLFVDTAGIRR 260

Query: 280 TDDI--VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKS 329
              I  +EK  + RT   +E AD+ LL+ + +        K        ++  I +  K 
Sbjct: 261 RGKIEGIEKYALDRTQKALEKADIALLVLDCSLPFADLDEKIGGLVDKFSLGVIVVLNKW 320

Query: 330 DLYSTYTEEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D+ S   +E +                 +S+  G  ++ L  KI  +  N  +++P SI 
Sbjct: 321 DIRSREFKEVEKEVRHRFKYLEHAPLVTVSAQNGRHIDMLKEKILKVYENFSRRIPTSIL 380

Query: 375 S 375
           +
Sbjct: 381 N 381



 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSLFN LAK+ +AI +D+ GTTRD+    +++EG  V + DT GI   +
Sbjct: 4   IAIIGKPNVGKSSLFNRLAKERIAITSDVSGTTRDIKKQVIEIEGNEVLLVDTGGIELKE 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSD--- 330
             +  +  +      + AD++L + +        +IS       +N     +  K D   
Sbjct: 64  TGLFGKVRELALRAAKEADVVLYMVDGKMRPQDDDISLFRALHRENEHLFLVVNKIDNDK 123

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  ++ +  E    IS     G+  L  +I  +L
Sbjct: 124 EKERGWEFAEFGAEKLLFISVSHNRGVGALQREIADVL 161


>gi|296332978|ref|ZP_06875435.1| GTP-binding protein EngA [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674918|ref|YP_003866590.1| ribosome 50S subunit assembly GTPase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149829|gb|EFG90721.1| GTP-binding protein EngA [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413162|gb|ADM38281.1| GTPase essential for ribosome 50S subunit assembly [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 436

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 26/226 (11%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   T+    L++  +         +    +     +    L F 
Sbjct: 91  NGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT------EMRANI-----YDFYSLGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   +    L D   L + ++ H       +      +  ++G  N GKSSL NA+
Sbjct: 140 EPYPISG-THGLGLGD---LLDAVAEHFKNIPETKYDEEVVQFCLIGRPNVGKSSLVNAM 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+++ GTTRD +            I DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEERVIVSNVAGTTRDAVDTAFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 255

Query: 297 ENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST 334
           + ++++ ++ +     I   K I   +       + +  K D    
Sbjct: 256 DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 301



 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
                YD           IS   G GL +L++ +     N
Sbjct: 126 MRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 165


>gi|86134521|ref|ZP_01053103.1| GTP-binding protein EngA [Polaribacter sp. MED152]
 gi|85821384|gb|EAQ42531.1| GTP-binding protein EngA [Polaribacter sp. MED152]
          Length = 436

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + I+  I   +  ++ +    +  ++G  NAGKSS  NAL  +D  IVT+I GTTRD
Sbjct: 154 ELLDAIAEKIPAPEEVDLEKKELPRFAVVGRPNAGKSSFINALIGEDRNIVTNIAGTTRD 213

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
            +    +  G+   + DTAGIR+   +    E   + R    +E +D+I+L+ +     E
Sbjct: 214 SIDTKYNRFGFDFNLVDTAGIRKKSRVKEDLEFYSVMRAVRSIEYSDVIILVIDATRGFE 273

Query: 314 --------ISFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFT 347
                   ++       + +  K DL                     +T+     IS+ T
Sbjct: 274 GQDQNIFWLAEKNRKGVVILINKWDLVEKETNTMRDYEAKVKEQIAPFTDVPIVFISALT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
            + L + I     +  N+  ++P S
Sbjct: 334 KQRLFKAIETAVEVFENRKNRIPTS 358



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L ++  AIV  + G TRD      D  G    + DT G    +
Sbjct: 5   IAIVGRPNVGKSTLFNRLVQRREAIVDSVSGVTRDRHYGKSDWNGKEFSVIDTGGYAIGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E+E  K+  L ++ ADLI+ + ++            ++             K D  
Sbjct: 65  DDIFEEEIRKQVKLAIDEADLIVFVVDVEDGITPMDAEVAKLLRKVKKPIFTAVNKVDNA 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILS 363
               +  +         H ISS  G G  EL++ I   + 
Sbjct: 125 MRDADAVEFYNLGLGDYHTISSINGSGTGELLDAIAEKIP 164


>gi|325524779|gb|EGD02753.1| GTP-binding protein Der [Burkholderia sp. TJI49]
          Length = 445

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--AQQDISDQDAHIAGFVVEQGRALVIG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  E                  H IS+    G+  L+  +    +    KL
Sbjct: 297 VNKWDGLDEHARERAKADLTRKLKFLDFAKSHFISAAKKTGIGALMRSVDDAYAAAMAKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +     + ++ +              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKTIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D           IS+  G+G+ ++IN+   +      +   
Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDMINEALEVAYADQPEEED 172


>gi|311113301|ref|YP_003984523.1| ribosome-associated GTPase EngA [Rothia dentocariosa ATCC 17931]
 gi|310944795|gb|ADP41089.1| ribosome-associated GTPase EngA [Rothia dentocariosa ATCC 17931]
          Length = 529

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 125/347 (36%), Gaps = 62/347 (17%)

Query: 86  HGGIAVVNGIL---EELAKM-PNL---RLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
            G   ++N IL   E + +  P +   R++   E+  + F    +D    ES A  I ++
Sbjct: 86  VGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWVGKRF--TLVDTGGWESDARGIDAQ 143

Query: 139 TEMQRRLSMEGMS------------GELSSLYGQWIDKLTHIRSFIEADLDF----SEEE 182
              Q  +++E                       + + ++      +   +D      E  
Sbjct: 144 VADQAEIAVEQADVVILVVDARVGITASDEQIVRMLRRVKKPIILMANKIDDSHLEPEIY 203

Query: 183 DVQNFSSKEVLN----DILFLKNDISSHIS------QGKLGEIIRNGYKIVILGHSNAGK 232
            + +    +           L + +   +       Q    E      ++ ++G  N GK
Sbjct: 204 SLWSLGMGQPFPVSGLHGRGLADALDELLEVMPEHSQYAQPEAPGGPRRVALIGRPNVGK 263

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289
           SSL N LA  + A+V D+ GTTRD +   +DL GY  +  DTAGIR    +    E    
Sbjct: 264 SSLLNKLAGSERAVVNDLAGTTRDPIDEVIDLGGYPWRFIDTAGIRRRQHMAKGAEFYSS 323

Query: 290 KRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD---------LY 332
            RT   +E +++ ++L +++           + +       +    K D         L 
Sbjct: 324 LRTQTALERSEVAVVLLDVSEPLSEQDVRIIQTTIDSGRAMVLAFNKWDTLDEERRDMLE 383

Query: 333 STYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                +  H        IS+ TG   ++L+  ++  L +   ++P  
Sbjct: 384 REIDRDLAHVKWAPRVNISAKTGWHKDKLVPALERSLESWDSRIPTG 430



 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 69/163 (42%), Gaps = 17/163 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++ N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 78  VAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWVGKRFTLVDTGGWESDA 137

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLYS 333
             ++ +   +  + VE AD+++L+ +       + ++ +   +      I +  K D   
Sbjct: 138 RGIDAQVADQAEIAVEQADVVILVVDARVGITASDEQIVRMLRRVKKPIILMANKIDDSH 197

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFK 367
              E Y            +S   G GL + ++++  ++    +
Sbjct: 198 LEPEIYSLWSLGMGQPFPVSGLHGRGLADALDELLEVMPEHSQ 240


>gi|148559467|ref|YP_001258406.1| GTP-binding protein EngA [Brucella ovis ATCC 25840]
 gi|166224311|sp|A5VNV9|DER_BRUO2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|148370724|gb|ABQ60703.1| GTP-binding protein [Brucella ovis ATCC 25840]
          Length = 483

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 32/221 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           E  +D +E     +T   +  AD +L + +  +          E         + +  K+
Sbjct: 62  EAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKA 121

Query: 330 DLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +   +    YD           IS+  G+G+ +L + I  +L          + + +R  
Sbjct: 122 EARGSEAGMYDAFQLGLGEPCPISAKHGQGMPDLRDAIVELL------GEERVFAEERQE 175

Query: 381 YHLSQTVRYLEMASL----NEKDCGLDIIAEN----LRLAS 413
               +      + +L     E     +I A +    LR+A 
Sbjct: 176 EAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAI 216



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 94/263 (35%), Gaps = 32/263 (12%)

Query: 93  NGILEELAKMPNLRLANPG--EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM 150
           + +L  +     +  A+    E  RR+ +   +   +AE+        +E     + +  
Sbjct: 84  DAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKAEARG------SEAGMYDAFQLG 137

Query: 151 SGELS-------SLYGQWIDKLTHIRSF--IEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
            GE                D +  +     + A+    E  D     +         +++
Sbjct: 138 LGEPCPISAKHGQGMPDLRDAIVELLGEERVFAEERQEEAADEVFTPAAVGALVGDDIED 197

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
             +  I      + +R    I I+G  NAGKS+L N +  +D  +     G TRD ++ D
Sbjct: 198 PDAEEIPAYDATKPLR----IAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISAD 253

Query: 262 LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE----- 313
            +  G  +K+ DTAG+R    +    EK  +      +  A++++++ +     E     
Sbjct: 254 WEWHGRKIKLFDTAGMRRKARVQEKLEKLSVADGLRAIRFAEVVIIVLDATIPFEKQDLQ 313

Query: 314 ---ISFPKNIDFIFIGTKSDLYS 333
              +   +    +    K DL  
Sbjct: 314 IADLIIREGRAPVIAFNKWDLIE 336


>gi|225077176|ref|ZP_03720375.1| hypothetical protein NEIFLAOT_02231 [Neisseria flavescens
           NRL30031/H210]
 gi|224951524|gb|EEG32733.1| hypothetical protein NEIFLAOT_02231 [Neisseria flavescens
           NRL30031/H210]
          Length = 486

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  DI     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 156 LIEDILETFPEPEKEEEAAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 215

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 216 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 275

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 276 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 335

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L   I++  +    K+P    + 
Sbjct: 336 DGLFESIQAAYNAAMIKMPTPKITR 360



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 6   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 66  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 125

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                +  +        ++IS   G+G+  LI  I    
Sbjct: 126 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETF 164


>gi|218767960|ref|YP_002342472.1| GTP-binding protein EngA [Neisseria meningitidis Z2491]
 gi|26006740|sp|Q9JV01|DER_NEIMA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|121051968|emb|CAM08277.1| putative GTP-binding protein [Neisseria meningitidis Z2491]
          Length = 485

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  DI     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 155 LIEDILETFPEPEKEEEEAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L + I++  +    K+P    + 
Sbjct: 335 DGLFDSIQAAYNAAMIKMPTPKITR 359



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                +  +        ++IS   G+G+  LI  I    
Sbjct: 125 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETF 163


>gi|310827223|ref|YP_003959580.1| hypothetical protein ELI_1631 [Eubacterium limosum KIST612]
 gi|308738957|gb|ADO36617.1| hypothetical protein ELI_1631 [Eubacterium limosum KIST612]
          Length = 439

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 11/167 (6%)

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            S+++ L    FL   I              +  KI ++G  NAGKS+L N +   D  I
Sbjct: 145 ISAEQGLGLGDFLDEVIERVKKVYDEDAQEDDNLKIAVIGKPNAGKSTLINKMVGHDRLI 204

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           V+D+PGTTRD +  ++   G    + DTAG+R+   I    E+  I R    V+ +D++L
Sbjct: 205 VSDVPGTTRDAIDTEVRFNGRDYTLIDTAGLRKKKKIYEDIERYSIVRAIAAVDRSDVVL 264

Query: 304 LLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
           +L +              I+  ++   I I  K D+    T+  D +
Sbjct: 265 VLIDGEKGVTEQDAKIAGIAHNRSKPSIIIVNKWDIVEKDTKTMDKM 311



 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 22/171 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + +AIV D PG TRD +  D + + +   + DT GI   T
Sbjct: 6   VAVVGRPNVGKSTLFNKLVGERIAIVEDTPGVTRDRIIADAEWQNHHFTLIDTGGIEPHT 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNI--DFIFIGTKSD-- 330
            D +  +   +  L ++ ADLI+LL +       +  +  +  +    + +    K D  
Sbjct: 66  KDDILLQMRVQAELAIDMADLIVLLVDGREGMTASDLEVANMIRKHSKNVLLAVNKVDSQ 125

Query: 331 -----LYSTYTEEYDHLISSFTGEG------LEELINKIKSILSNKFKKLP 370
                ++  Y       I+    +G      L+E+I ++K +     ++  
Sbjct: 126 QLENNIFEFYNLGIGEPIAISAEQGLGLGDFLDEVIERVKKVYDEDAQEDD 176


>gi|330817163|ref|YP_004360868.1| GTPase family protein [Burkholderia gladioli BSR3]
 gi|327369556|gb|AEA60912.1| GTPase family protein [Burkholderia gladioli BSR3]
          Length = 448

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GVKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--AQQDISDQDAHIAGFVVEQGRALVVG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +T +                  H IS+    G+  L+  +    +   KKL
Sbjct: 297 VNKWDGLDAHTRDRTKADLTRKLKFLEFAKFHFISAAEKTGIGPLLRSVDDAYAAAMKKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRAGARPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                  D           IS+  G+G+ ++IN+   +      + 
Sbjct: 125 KYTAVASDFYELGMGDPRAISAAHGDGVTDMINEALEVAYAGQPEE 170


>gi|300312253|ref|YP_003776345.1| GTP-binding protein [Herbaspirillum seropedicae SmR1]
 gi|300075038|gb|ADJ64437.1| GTP-binding protein [Herbaspirillum seropedicae SmR1]
          Length = 447

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 80/211 (37%), Gaps = 32/211 (15%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            + +  E    G KI I+G  N GKS+L N L  ++  I  D+PGTTRD + I  + EG 
Sbjct: 169 PEPEPEETAVRGTKIAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDSIEIPFEREGR 228

Query: 268 LVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISF 316
              + DTAGIR      + +EK  + +T   + +A+++LLL +                 
Sbjct: 229 HYTLIDTAGIRRRGKVFEAIEKFSVVKTLKSISDANVVLLLLDAQQDISEQDAHIAGFVL 288

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKS 360
                 +    K D   +                      H IS+    G+  L+  I S
Sbjct: 289 ESGRALVVGVNKWDGMESDQRNQIKMDLERKLNFLSFAKFHFISALKSTGIGPLMKSIDS 348

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
             +    KL        R    L + + + +
Sbjct: 349 AYAAAMAKLSTP-----RLTRALEEALEHQQ 374



 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNI--DFIFIGTKSD-- 330
            D +  E  K+T   V  AD+++ + +         K    F +      + +  KS+  
Sbjct: 65  KDGIMYEMAKQTKQAVVEADVVVFIVDGRQGLTPHDKTITDFLRKCGRPVLLVVNKSEGM 124

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            Y++ T ++        ++IS+  G+G+ +L+ +   +   +    P 
Sbjct: 125 KYTSVTADFYELGMGDPYVISAAHGDGVADLVTEALDVAEAQRTPEPE 172


>gi|157692783|ref|YP_001487245.1| GTP-binding protein EngA [Bacillus pumilus SAFR-032]
 gi|166920097|sp|A8FEL8|DER_BACP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157681541|gb|ABV62685.1| GTPase [Bacillus pumilus SAFR-032]
          Length = 436

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 85/226 (37%), Gaps = 26/226 (11%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   T+    L++  +         +    +    +     L F 
Sbjct: 91  NGRDGVTSADEEVAKILYRTKKPVVLAVNKLDNP------EMRSDVYDFYA-----LGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   +    L D   L + ++ H       +      +  ++G  N GKSSL NA+
Sbjct: 140 EPYPISG-THGLGLGD---LLDAVAEHFKNLPDTQYDEQVVQFCLIGRPNVGKSSLVNAM 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             +D  IV++I GTTRD +            I DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEDRVIVSNIAGTTRDAVDTMFAYNQRDFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 255

Query: 297 ENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST 334
           + +D++ ++ +     I   K I   +       + +  K D    
Sbjct: 256 DRSDVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVEK 301



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+I+ +      + S  E    I +      +    K D   
Sbjct: 66  EPFLAQIRHQAEIAMDEADVIIFMVNGRDGVTSADEEVAKILYRTKKPVVLAVNKLDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
             ++ YD           IS   G GL +L++ +     N
Sbjct: 126 MRSDVYDFYALGFGEPYPISGTHGLGLGDLLDAVAEHFKN 165


>gi|118602671|ref|YP_903886.1| small GTP-binding protein [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567610|gb|ABL02415.1| small GTP-binding protein [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 465

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 85/230 (36%), Gaps = 28/230 (12%)

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGK 232
           A   F          S E    I  L +     + +  + EI+   G  + +LG  N GK
Sbjct: 132 AAEFFELGLGEPMLISAEHGQGIADLIDTTLPLLPKVTIDEIVEVEGITVAVLGRPNVGK 191

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK---EGI 289
           S+L N +  ++  +V D PGTT D + I  + EG      DTAGIR      EK     I
Sbjct: 192 STLINRILGQERVLVMDFPGTTHDSIYIPFEHEGQKYTFIDTAGIRRKRSTHEKVEIFSI 251

Query: 290 KRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTEE--- 338
            +    +E A +++L+ +          +   +   K    + +  K D    Y ++   
Sbjct: 252 IKAIDALERAHVVILVLDAQVGVIEQDATLLGMIIDKGKALLIVINKWDGLDDYQKQEVK 311

Query: 339 -------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                          H IS+    G+ +L   I     N  ++   S+ +
Sbjct: 312 RKLEIKLSFINYASVHYISALHAFGVGKLFTPINQSYQNAGEQHSTSVLN 361



 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 19/154 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG---YLVKISDTAGIR 278
           I ++G  N GKS+LFN L+    A+V+D  G TRD    ++ L+        I DT G+ 
Sbjct: 6   ICLVGRPNVGKSTLFNRLSHSRQALVSDFEGLTRDRQYAEVLLDNDTQTFATIIDTGGLT 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSD 330
             +++V+     +    +E +D+I  +            EI         + I +  K++
Sbjct: 66  NKNNLVDSSIQGQVLNALEESDIIYFIVSSRDGVIGLDLEIVSRLRKLKKNIILVCNKAE 125

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELIN 356
            L      E+         LIS+  G+G+ +LI+
Sbjct: 126 GLNPALAAEFFELGLGEPMLISAEHGQGIADLID 159


>gi|212550485|ref|YP_002308802.1| GTP-binding protein EngA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|229710725|sp|B6YQB9|DER_AZOPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|212548723|dbj|BAG83391.1| GTP-binding protein EngA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 437

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 18/172 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV +  GTTRD     ++  G +  I DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQSHQAIVDEEEGTTRDRQYSKVEWCGQIFSIIDTGGWVLNS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           DDI E+E  K+  + +E AD+IL L ++             +   +    I +  K+D Y
Sbjct: 65  DDIFEEEINKQVQIAIEEADIILFLVDVIHGTTDLDQQIAALLRREKKLVILVSNKADNY 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
             Y +  +           +S+  G G  EL++ + S  + K    P     
Sbjct: 125 KLYAQSAEFYALGLGDPYNVSAINGSGTGELLDYLISNFTKKVDNKPEITIP 176



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 11/146 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---R 278
           I I+G  N GKSSL NAL  ++  IVT+I GTTRD +    D  G    + DTAGI   +
Sbjct: 178 IAIVGKPNVGKSSLINALTNEERNIVTNIAGTTRDSIYTLYDKFGLKFYLVDTAGICKKK 237

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISF-----PKNIDFIFIGTKSD 330
           + ++  E   I R    +E++D+ +LL +       ++I+            I +  K D
Sbjct: 238 KVEENSEYYSIIRAIRSIESSDICILLIDATQCIMAQDINIFSIIQKNEKGLIIVVNKWD 297

Query: 331 LYSTYTEEYDHLISSFTGEGLEELIN 356
           L      +  +   +   +      +
Sbjct: 298 LIQNKNPKTIYTFENAIRQRTAPFTD 323


>gi|33593199|ref|NP_880843.1| GTP-binding protein EngA [Bordetella pertussis Tohama I]
 gi|33597408|ref|NP_885051.1| GTP-binding protein EngA [Bordetella parapertussis 12822]
 gi|33602148|ref|NP_889708.1| GTP-binding protein EngA [Bordetella bronchiseptica RB50]
 gi|41017018|sp|Q7VWL4|DER_BORPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|41017021|sp|Q7W6Q0|DER_BORPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|41017022|sp|Q7WHN4|DER_BORBR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|33563574|emb|CAE42473.1| putative GTP-binding protein [Bordetella pertussis Tohama I]
 gi|33573835|emb|CAE38143.1| putative GTP-binding protein [Bordetella parapertussis]
 gi|33576586|emb|CAE33664.1| putative GTP-binding protein [Bordetella bronchiseptica RB50]
 gi|332382610|gb|AEE67457.1| GTP-binding protein EngA [Bordetella pertussis CS]
          Length = 451

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 109/291 (37%), Gaps = 49/291 (16%)

Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166
           LA     +R+A       + EA+ +  L+ +        + +     L    GQ    L 
Sbjct: 71  LAEMARQTRQA-------IAEADVVVFLVDAR---AGVNAHDHEIARLLRKSGQQRVLLA 120

Query: 167 HIRSFI----EADLDFSEEEDVQNFSSKEVLNDILFLKNDISS---HISQGKLGEIIRN- 218
             ++       A  DF E    +         D +    +I+           GE +   
Sbjct: 121 VNKAEGMGVGNATGDFHELGLGEPHPISAAHGDGIVDLIEIALSGLVAPPADTGEQLEQD 180

Query: 219 ----GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
                 K+ I+G  N GKS+L N L  ++  I  D+PGTTRD + ID + +G    + DT
Sbjct: 181 VVDHRIKLAIVGRPNVGKSTLINTLLGEERVIAFDMPGTTRDAIEIDFERDGRKYTLIDT 240

Query: 275 AGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFI 323
           AG+R+     + +EK  + +T   +E ++++LL+ +  ++                   +
Sbjct: 241 AGLRKRGKVFEAIEKFSVIKTLQAIEASNVVLLMIDAQAEVSEQDAHIAGFVLETGRAVV 300

Query: 324 FIGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKI 358
               K D   +   E                  H IS+  G+G++ L+  +
Sbjct: 301 VAINKWDGLDSDQRERIEREFQRKLRFLGFARMHTISALKGQGVKPLLKSV 351



 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 19/154 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+LFN L +   A+V D  G TRD    +  +      + DT G     
Sbjct: 7   VALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYGEGRVGDTPFLVIDTGGFEPVA 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS------------------KKEISFPKNIDF 322
            D +  E  ++T   +  AD+++ L +  +                  ++ +      + 
Sbjct: 67  KDGILAEMARQTRQAIAEADVVVFLVDARAGVNAHDHEIARLLRKSGQQRVLLAVNKAEG 126

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           + +G  +  +        H IS+  G+G+ +LI 
Sbjct: 127 MGVGNATGDFHELGLGEPHPISAAHGDGIVDLIE 160


>gi|319900091|ref|YP_004159819.1| ribosome-associated GTPase EngA [Bacteroides helcogenes P 36-108]
 gi|319415122|gb|ADV42233.1| ribosome-associated GTPase EngA [Bacteroides helcogenes P 36-108]
          Length = 437

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKTEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +DD+ E+E  K+  + ++ AD+IL + ++ +           I        + I  K+
Sbjct: 62  VNSDDVFEEEIRKQVLMALDEADVILFVVDVMNGVTDLDLQVATILRRSKKPVLLIANKT 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D   L     E Y       + +S+ TG G  ++++ I S    +  ++
Sbjct: 122 DNNELQYNAPEFYSLGLGDPYCVSAITGSGTGDMMDLIVSKFKKETDEI 170



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 32/213 (15%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +  EI+     +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+  
Sbjct: 166 ETDEILDEDIPRFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDF 225

Query: 270 KISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPK 318
            + DTAGIR+ + +    E   + R+   +EN+D+ +L+ +     E        +    
Sbjct: 226 YLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENSDVCILMLDATRGIESQDLNIFSLIQKN 285

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSH 376
               + +  K DL    T +            ++   + I++       F  +  S  + 
Sbjct: 286 AKGLVVVVNKWDLVEDKTAKV-----------MKTFEDAIRNRFAPFVDFPIIFASALTK 334

Query: 377 KRHLYHLSQTVRYLEM-------ASLNEKDCGL 402
           +R L  L Q     E        A LNE+   L
Sbjct: 335 QRILKVLEQARNVYENRMVRIPTARLNEEMLPL 367


>gi|221198076|ref|ZP_03571122.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2M]
 gi|221204366|ref|ZP_03577383.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2]
 gi|221212773|ref|ZP_03585749.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD1]
 gi|221166986|gb|EED99456.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD1]
 gi|221175223|gb|EEE07653.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2]
 gi|221182008|gb|EEE14409.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2M]
          Length = 445

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--AQQDISDQDAHIAGFVVEQGRALVIG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  E                  H IS+    G+  L+  +    +    KL
Sbjct: 297 VNKWDGLDEHARERAKADLTRKLKFLDFAKSHFISAAKKTGIGALMRSVDDAYAAAMAKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +          S  +           +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  D           IS+  G+G+ ++IN+   +      +    
Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDMINEALEVAYADQPEEEDD 173


>gi|194476538|ref|YP_002048717.1| GTP-binding protein EngA [Paulinella chromatophora]
 gi|171191545|gb|ACB42507.1| GTP-binding protein EngA [Paulinella chromatophora]
          Length = 456

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 12/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I +++  G   E   +  ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD 
Sbjct: 156 ELLDKIVTYLD-GTTIEEENDIVQLAIVGRPNVGKSSLLNAICGETRAIVSQIRGTTRDT 214

Query: 258 LTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI---NSK 311
           +   ++ EGY  ++ DTAGI   R  D   E   I R+F  +E +D+ LL+ +     ++
Sbjct: 215 IDTYVEREGYHWRLIDTAGIRRRRSVDYGPELFSINRSFKAIERSDVCLLIIDALDGVTE 274

Query: 312 KEISFP-----KNIDFIFIGTKSDLYST 334
           ++         +    I I  K D    
Sbjct: 275 QDQRLAGRIEEEGRACIIIINKWDAIEK 302



 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 61/173 (35%), Gaps = 19/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D  G TRD             ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLANRLCQSREAIVHDELGVTRDRTYQKGFWGEKQFQVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKN--IDFIFIGTKSDLY 332
           D     E  K+  + +  A + +++ +         +    F +      +    K +  
Sbjct: 66  DSEFLPEIRKQAIIALSEATVAVVIVDGQQGLTAADETIAEFLRGHSCPILLAVNKCESP 125

Query: 333 ST----------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                               IS+  G G  EL++KI + L     +    I  
Sbjct: 126 EQGLSMAAEFWSLGLGTPFPISAIHGAGTGELLDKIVTYLDGTTIEEENDIVQ 178


>gi|57239243|ref|YP_180379.1| GTP-binding protein EngA [Ehrlichia ruminantium str. Welgevonden]
 gi|58579205|ref|YP_197417.1| GTP-binding protein EngA [Ehrlichia ruminantium str. Welgevonden]
 gi|57161322|emb|CAH58245.1| putative GTP binding protein EngA [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417831|emb|CAI27035.1| Probable GTP-binding protein engA [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 439

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 173 EADLDFSEEEDV--QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            +++D+ E  +     + S E    ++ L + +   I +  +     +  KI I+G  NA
Sbjct: 125 CSEVDYLEYFNFIGPIYISAEHNLGMVDLYDALIPFIPESNVENFTSSYIKISIVGRPNA 184

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE--- 287
           GKS+  N L  +D  IV+  PGTTRD + I+ + +     + DTAG+R+   I E     
Sbjct: 185 GKSTFVNRLVGEDRMIVSSEPGTTRDAVDIEYEYQDQKFILIDTAGMRKKAKITENIEVT 244

Query: 288 GIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYST 334
            + ++   +  +D+I+L+ +          S  E+   K    I    K D+ S 
Sbjct: 245 SVYKSIESINRSDIIILMIDSVCGMEQQDLSIAELVIQKGKAIIIALNKWDVISK 299



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 19/157 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS++FN L KK  AIV+++P  TRD      DL G   K+ DT G+  
Sbjct: 2   LKVAIVGLPNVGKSTIFNRLVKKRSAIVSNVPNLTRDRREGSADLCGLKFKVIDTGGVDY 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK---------NIDFIFIGTKS- 329
              +     + +  L +E  D+I  + +   +++I   +         +   I I  K  
Sbjct: 62  RIKLS-VLILDQVKLAIEACDVIFFVVDARVERDIKNIEFAKYLRKNTHKPIILIANKCE 120

Query: 330 --------DLYSTYTEEYDHLISSFTGEGLEELINKI 358
                   D    +       IS+    G+ +L + +
Sbjct: 121 SRKKCSEVDYLEYFNFIGPIYISAEHNLGMVDLYDAL 157


>gi|312890129|ref|ZP_07749672.1| ribosome-associated GTPase EngA [Mucilaginibacter paludis DSM
           18603]
 gi|311297406|gb|EFQ74532.1| ribosome-associated GTPase EngA [Mucilaginibacter paludis DSM
           18603]
          Length = 433

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 13/151 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++        L +      K  I G  N GKSS+ N L   D  IVT I GTTRD 
Sbjct: 154 ELLDEVVKTFEDVPLEQ--NTLPKYTIAGRPNVGKSSIINTLLGHDRNIVTPIAGTTRDS 211

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKE- 313
           + I  +  G+   + DTAG+R+   +   +E   + RT   +E +D+++L+ +     E 
Sbjct: 212 IHIHYNQFGHDFMLIDTAGMRKKTKVKENIEFYSVMRTIKAIEESDVVILMIDAVEGIEA 271

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTE 337
                  ++       + +  K DL     +
Sbjct: 272 QDVNIFHLAEKNKKGIVIVVNKWDLIEKNNK 302



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV D  G TRD      +  G+   + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIEARKAIVDDFSGVTRDRHYGVSEWTGHDFTVIDTGGYVANS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLY 332
           DD+ E    ++  + +E A +IL + ++ +       EI+            +  K D  
Sbjct: 65  DDVFEAAIREQVIIAIEEASVILFMVDVTTGITDLDDEIATFLRKSKKPVFVVSNKVDNN 124

Query: 333 STYTEEY---------DHLISSFTGEGLEELINKIKSILSN 364
           S   E            + IS+ TG G  EL++++     +
Sbjct: 125 SQQVESATFYGFGLGDIYNISAMTGSGTGELLDEVVKTFED 165


>gi|260892064|ref|YP_003238161.1| GTP-binding protein Era [Ammonifex degensii KC4]
 gi|260864205|gb|ACX51311.1| GTP-binding protein Era [Ammonifex degensii KC4]
          Length = 300

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 23/218 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  R+G+ + ++G  N GKS+L N L  + VAIV+D P TTR  +   L L    +   D
Sbjct: 4   KEYRSGF-VSVVGRPNVGKSTLINHLVGQKVAIVSDKPQTTRHRILGVLTLPEAQIVFVD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
           T GI +    + +  +      ++  DL+L L E  S          E      +  I +
Sbjct: 63  TPGIHKPRHRLGEYLVTLALGALKGVDLVLFLSEATSPPGAGDYFILEQLKKAEVPVILV 122

Query: 326 GTKSDLYST---------YTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL S          + +E+D      +S+ TGE LE L+ +I   L    +  P  
Sbjct: 123 LNKIDLISKPRLLPLIDLWRQEHDFAAIVPVSALTGENLERLVQEIVEHLPPGPQYFPPE 182

Query: 373 IPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENL 409
           + + +   + +++ +R  +   +  E   G+ ++ E +
Sbjct: 183 VTTSQPPEFVVAELIREKVLHLTHEEVPHGVAVVVEEM 220


>gi|222110307|ref|YP_002552571.1| gtp-binding protein enga [Acidovorax ebreus TPSY]
 gi|254783151|sp|B9MFY0|DER_ACIET RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|221729751|gb|ACM32571.1| Miro domain protein [Acidovorax ebreus TPSY]
          Length = 447

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 85/200 (42%), Gaps = 32/200 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +N  ++ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG
Sbjct: 177 KNVIRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQKFELIDTAG 236

Query: 277 IRETD---DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFI 325
           +R      + +EK  + +T   +E+A+++LLL +      +    I+          +  
Sbjct: 237 LRRKGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVIA 296

Query: 326 GTKSDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    Y  +                  H IS+   +G+  L + I     +  +K+
Sbjct: 297 VNKWDAVDDYGRQQLERSIETRLSFLKFAPLHFISAKKRQGIGPLWSSIIQAYKSANRKM 356

Query: 370 PFSIPSHKRHLYHLSQTVRY 389
           P  + +       L + V++
Sbjct: 357 PTPVLTR-----LLQEAVQF 371



 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 20/154 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD    +     +   + DT G   + 
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGRQGKHEYIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFL------------------EVENADLILLLKEINSKKEISFPKNIDF 322
              + +E  ++T                      ++ D+   L+ +     ++  K    
Sbjct: 65  SSGIYREMARQTQQAVAEADVVVFVVDVRGGLSAQDHDIANYLRRLGKPCVLAGNKAEGM 124

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                 ++ Y     E  H +S+  G+G+  L++
Sbjct: 125 QDSMHLAEFYELGLGEV-HPVSAAHGQGVRSLVD 157


>gi|329957356|ref|ZP_08297876.1| ribosome biogenesis GTPase Der [Bacteroides clarus YIT 12056]
 gi|328523069|gb|EGF50172.1| ribosome biogenesis GTPase Der [Bacteroides clarus YIT 12056]
          Length = 437

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 18/158 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +DDI E+E  K+  + V+ AD+IL + ++ +           I        + +  K+
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDLQVASILRRAKKPVLLVANKT 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKI 358
           D   L     E Y       + IS+ TG G  +L++ I
Sbjct: 122 DNNELQYNAPEFYSLGLGDPYCISAVTGSGTGDLMDLI 159



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 31/225 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I  +  +     +  +  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD 
Sbjct: 154 DLMDLIVGNFKKESDEILDEDIPRFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAGIR+ + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYNKFGFDFYLVDTAGIRKKNKVSEDLEYYSVIRSIRSIENSDVCILMLDATRGIES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL--SN 364
                  +    +   + +  K DL               T + ++   N I+S      
Sbjct: 274 QDLNIFSLIQKNSKGLVVVVNKWDLVED-----------KTVKVMKTFENAIRSRFAPFV 322

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEM-------ASLNEKDCGL 402
            F  +  S  + +R L  L +     E        A LNE+   L
Sbjct: 323 DFPIIFASALTKQRILKVLEEARTVYENRMIRIPTARLNEEMLPL 367


>gi|299135837|ref|ZP_07029021.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX8]
 gi|298601961|gb|EFI58115.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX8]
          Length = 631

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 61/137 (44%), Gaps = 11/137 (8%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           GE I    KI I+G  N GKS+L NAL   D AIV+ I GTTRD +   +  EG+  +  
Sbjct: 347 GEHISRETKIAIIGRPNVGKSTLLNALTGSDRAIVSPIAGTTRDAVDEVVTREGHDFRFI 406

Query: 273 DTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNID 321
           DTAGIR         EK  +  +   +E AD+ LL+ +               +      
Sbjct: 407 DTAGIRRKGKTKLLAEKLSVIMSRKHLEAADVALLVIDAAEGVAAADANIGGYAHESGRS 466

Query: 322 FIFIGTKSDLYSTYTEE 338
            I I  K DL +    +
Sbjct: 467 VIIIVNKWDLMTEVGPD 483



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 84/204 (41%), Gaps = 21/204 (10%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            + + K    +   L  +++    +      +     + I G  N GKS+LFN L +   
Sbjct: 103 PDAAEKREWREAEALATELTLVADRHHEPTRL---PLVAICGRPNVGKSTLFNRLTQTRR 159

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
           +IV D PG TRD +  +++  G  V++ DT G I + + ++  E  ++  + +E AD+I+
Sbjct: 160 SIVGDEPGITRDRIYGEVEWAGRDVRLVDTGGVIPDDEALIPAEIFRQAKVGLEEADVII 219

Query: 304 LLKEINSK---KEISFPK-----NIDFIFIGTKSDLYSTYTEEYDHLI---------SSF 346
           ++ +  ++    +I   +              K D         +            S+ 
Sbjct: 220 MVVDGRTELAAPDIELARLLLRGGKPIFLAVNKMDTPELEAGAENFRRLGFRNVLPISAE 279

Query: 347 TGEGLEELINKIKSILSNKFKKLP 370
              G+ +L++++ + L  +F    
Sbjct: 280 HAAGIGDLLDEVWAALPPEFVAEE 303


>gi|238855193|ref|ZP_04645512.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 269-3]
 gi|260664556|ref|ZP_05865408.1| ribosome-associated GTPase EngA [Lactobacillus jensenii SJ-7A-US]
 gi|282932513|ref|ZP_06337938.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1]
 gi|313471978|ref|ZP_07812470.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 1153]
 gi|238832085|gb|EEQ24403.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 269-3]
 gi|239529090|gb|EEQ68091.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 1153]
 gi|260561621|gb|EEX27593.1| ribosome-associated GTPase EngA [Lactobacillus jensenii SJ-7A-US]
 gi|281303462|gb|EFA95639.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1]
          Length = 436

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD         G+   I DT GI    
Sbjct: 6   VAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLI-------LLLKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
             +E E   +  + +E AD+I       L L +++ +   I +  +   +    K+D   
Sbjct: 66  GRIEDEIRAQADIAMEEADVIVMITSVALHLTDLDERIARILYRSSKPVLLAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              + YD           ISS  G G+ +L++ I      +       
Sbjct: 126 QRADIYDFYSLGLGDPIPISSTHGTGIGDLLDAIVENFPPEADTKDED 173



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 30/190 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAG 276
           +     ++G  N GKSS+ NA+  +   IV +  GTTRD +    +  +G   ++ DTAG
Sbjct: 173 DEIAFSVIGRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVDTPFVAEDGTKFRMIDTAG 232

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           IR    +    EK  + R    ++ +D++ L+ + ++            +       + +
Sbjct: 233 IRRRGKVYEKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQDKHVAGFAHDAGRGMLIV 292

Query: 326 GTKSDLYST-----------YTEEYDH-------LISSFTGEGLEELINKIKSILSNKFK 367
             K DL                EE+ +        +S+ TG+ LE+L + IK +  N+ +
Sbjct: 293 VNKWDLPKKDSNSAKDFTRVIREEFQYLDYAPIVFVSAKTGKNLEQLPDLIKEVAENQSQ 352

Query: 368 KLPFSIPSHK 377
           ++  S+ +  
Sbjct: 353 RIQSSVLNDM 362


>gi|225011402|ref|ZP_03701840.1| small GTP-binding protein [Flavobacteria bacterium MS024-2A]
 gi|225003905|gb|EEG41877.1| small GTP-binding protein [Flavobacteria bacterium MS024-2A]
          Length = 434

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 11/128 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  N+L  KD  IVTDI GTTRD +    +  G+   + DTAGIR  
Sbjct: 176 RFAVVGRPNAGKSSFINSLIGKDRYIVTDIAGTTRDSIDTQYNRFGFDFNLVDTAGIRRK 235

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
             +   +E   + R+   +E  D+ LL+ +     +        ++   N   + +  K 
Sbjct: 236 AKVKEDIEFYSVMRSVRAIEYCDVCLLVVDGTRGFDGQVQNIFWLAHRNNKGIVILVNKW 295

Query: 330 DLYSTYTE 337
           DL    T 
Sbjct: 296 DLVDKDTN 303



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+ FN + +K  AIV  I G TRD      D  G    + DT G  E +
Sbjct: 5   VAIVGRPNVGKSTFFNRMIQKREAIVDSISGVTRDRHYGKSDWNGRNFTLIDTGGYVEGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI +KE  K+  L +E AD+I+ + ++            ++             K D  
Sbjct: 65  DDIFQKEIDKQVNLAIEEADVIVFMVDVMDGVTGMDEVIADLLRRSQKPIFLAINKVDNA 124

Query: 333 STYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                         E  + ISS  G G  EL++ I   L  + ++    +P
Sbjct: 125 QRLESTLEFYSLGFEQFYCISSVNGGGSGELLDDIVKKLPEEEEREEDPLP 175


>gi|270308559|ref|YP_003330617.1| GTP-binding protein [Dehalococcoides sp. VS]
 gi|270154451|gb|ACZ62289.1| GTP-binding protein [Dehalococcoides sp. VS]
          Length = 441

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 18/180 (10%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE-IIRNGYKIVIL 225
           +++   +A   +S      +  S    N I  L + +   +    +      N  K+ ++
Sbjct: 126 NLKMGQDAAEFYSLGFGEPSVISAFHGNGISDLMDRVLEELPDQPIASPEEDNSVKLALV 185

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV- 284
           G +N GKS+L N    ++ +IV++IPGTTRD +   LD  G  V + DTAGIR    +  
Sbjct: 186 GRANVGKSTLLNTFLGQERSIVSNIPGTTRDAIDTPLDFNGTNVLLIDTAGIRRRGKVES 245

Query: 285 --EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-----------FIFIGTKSDL 331
             EK  + R    V+ AD++LL+ +    +E+   ++              I I  K DL
Sbjct: 246 GVEKYSVLRALKAVDRADVVLLVMD---TEELVTAQDTHIAGYVRDTAKGIIIILNKWDL 302



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N LA K++AI  D+PGTTRD L   +      + + DT G+  + 
Sbjct: 8   IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFTTVSWLDRKLIMVDTGGLDPDI 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           + ++ ++   +  L ++ ADL+LL+ ++ +          +I        I +  K+D  
Sbjct: 68  ESVIGQQVNIQISLAIKEADLVLLVVDVKTGLVTSDYEMADIIRRTGKSVILVANKADNL 127

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
               +  +           IS+F G G+ +L++++   L ++    P 
Sbjct: 128 KMGQDAAEFYSLGFGEPSVISAFHGNGISDLMDRVLEELPDQPIASPE 175


>gi|317153825|ref|YP_004121873.1| ribosome-associated GTPase EngA [Desulfovibrio aespoeensis Aspo-2]
 gi|316944076|gb|ADU63127.1| ribosome-associated GTPase EngA [Desulfovibrio aespoeensis Aspo-2]
          Length = 497

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/306 (18%), Positives = 114/306 (37%), Gaps = 37/306 (12%)

Query: 118 FENGKIDLLEAESLADLISSET-----EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           FE  +  + EA ++  ++  +      + Q    +      +  L  +        +   
Sbjct: 79  FEQAREAINEAHAILFVVDGKQGMSPLDEQAAEFVRRSGKPVMVLVNKVDSHEVAAQGTA 138

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           E          V       +      ++  +          +    G ++ +LG  NAGK
Sbjct: 139 EFHALGLPVFPVSAAHGYNLHEVREKVRRFVLDLGMDTDEEDTTERGLRLTMLGRPNAGK 198

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGI 289
           SS+ N +   D  IV+D+ GTTRD + +  + +G      DTAG+R   +I    EK  +
Sbjct: 199 SSIINRIIGTDRLIVSDVAGTTRDSIDVTFERQGKRYTFVDTAGVRRRANIQEHLEKISV 258

Query: 290 KRTFLEVENADLILLLKEIN------SKKEISF--PKNIDFIFIGTKSDLY--------- 332
            R     + +D+ +L+ +I        K+ I F   +   F+ +  K+DL          
Sbjct: 259 IRALKNSKRSDVTILVIDITLGVGRQDKRLIEFLAKEKTPFMVVCNKADLIPRSETKRAL 318

Query: 333 STYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             + EE          + S+  G G+ ++I   +++      ++   + +       L+Q
Sbjct: 319 EAFREELRIIPYVPLIMTSANKGVGIGKIIPLAETLRRECEIRIGTGVLNR-----ALAQ 373

Query: 386 TVRYLE 391
            +  L+
Sbjct: 374 VLEKLQ 379



 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 24/174 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + ++G  N GKS+LFN L +K  AI  D+PG TRD +  +  +      + DT G+    
Sbjct: 5   VALVGRPNVGKSTLFNRLLRKSRAITHDLPGVTRDRIYGECQMGDVKFDLVDTGGMVLES 64

Query: 278 ---RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIG 326
               E     E E  ++    +  A  IL + +             E         + + 
Sbjct: 65  EATPELSKDFEDEIFEQAREAINEAHAILFVVDGKQGMSPLDEQAAEFVRRSGKPVMVLV 124

Query: 327 TKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
            K D +    +               S+  G  L E+  K++  + +       
Sbjct: 125 NKVDSHEVAAQGTAEFHALGLPVFPVSAAHGYNLHEVREKVRRFVLDLGMDTDE 178


>gi|222086678|ref|YP_002545212.1| GTP-binding protein [Agrobacterium radiobacter K84]
 gi|254783132|sp|B9J7W1|DER_AGRRK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|221724126|gb|ACM27282.1| GTP-binding protein [Agrobacterium radiobacter K84]
          Length = 475

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L     +I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGEAKLIDLRFRIVDTAGLEE 62

Query: 280 TDDIV-EKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
            D+   E     +T L ++ ADL L + +          +  E+   +    + +  KS+
Sbjct: 63  ADEETLEGRMRAQTELAIDEADLTLFVVDAKMGLTHVDKTLAEMLRKRGRPVVLVANKSE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
              + +  YD           IS+  G+G+ +L + I   + +     P
Sbjct: 123 ARGSDSGFYDAYTLGLGDPCPISAEHGQGMMDLRDAIVEAIGHDQAFPP 171



 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 29/170 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  NAGKS+L N    +D  +     G TRD +++D    G  VK+ DTAG+R 
Sbjct: 206 LRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVDWTWRGRTVKMFDTAGMRR 265

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +  T   +  A+ ++++ +     E        +   +    +    K
Sbjct: 266 KARVTEKLEKLSVADTLRAIRFAETVVIIFDATIPFEKQDLQIVDLVIREGRAAVIAFNK 325

Query: 329 SD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKS 360
            D                  L           I+  TG+GL+ L+  I  
Sbjct: 326 WDMIEDRQAVLADLREKTDRLLPQARGIRAVPIAGQTGDGLDRLMQAIVD 375


>gi|209550425|ref|YP_002282342.1| GTP-binding protein EngA [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|238058977|sp|B5ZYX3|DER_RHILW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|209536181|gb|ACI56116.1| small GTP-binding protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 473

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
            D+   +     +T   ++ ADL L + +          +  E+   +    + +  KS+
Sbjct: 63  ADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
              + +  YD           IS+  GEG+ +L + I   +
Sbjct: 123 ARGSDSGFYDAYTLGLGEPTPISAEHGEGMLDLRDAIVEAI 163



 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 29/194 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R 
Sbjct: 203 LRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRR 262

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      +  A+ ++++ +     E        +   +    +    K
Sbjct: 263 KARVTEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLVLREGRAAVLAFNK 322

Query: 329 SD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D                  L           IS  TG GL++L+  I        K++ 
Sbjct: 323 WDMIEDRQAVLADLREKTDRLLPQARGIRAVPISGQTGWGLDKLMQSIIDTDRVWNKRIS 382

Query: 371 FSIPSHKRHLYHLS 384
            +  +       + 
Sbjct: 383 TAKLNRWLETQQIQ 396


>gi|149923268|ref|ZP_01911678.1| GTP-binding protein EngA [Plesiocystis pacifica SIR-1]
 gi|149815865|gb|EDM75385.1| GTP-binding protein EngA [Plesiocystis pacifica SIR-1]
          Length = 487

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 74/196 (37%), Gaps = 18/196 (9%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
             +         G    +   + I+G  N GKS+LFN L  +  AIV D PG TRD L  
Sbjct: 9   ETVELSADDDPRGASAASAPLVAIIGRPNVGKSTLFNRLVGRREAIVEDRPGVTRDRLYG 68

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIK-RTFLEVENADLILLLKEINSKK---EISF 316
               EG    + DT G+  + D      I+ +  + +E ADLIL + +        +I  
Sbjct: 69  VASWEGRHFLVVDTGGVDPSLDTGLPGHIRSQAEVAMEEADLILFVVDAKEGATAVDIDI 128

Query: 317 PK-----NIDFIFIGTKSD-----LYSTYTEEYD----HLISSFTGEGLEELINKIKSIL 362
                      +    K+D     L +    E      H +S+  G G+ +  + +   L
Sbjct: 129 AAELRRSGKPVMLAANKADSPSRELAAAAMHELGLGEVHAVSAAHGRGVGDFCDALLERL 188

Query: 363 SNKFKKLPFSIPSHKR 378
               +  P  IP   R
Sbjct: 189 PAATEAQPTPIPPGTR 204



 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 19/207 (9%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +I  +G  NAGKS+L N L ++   IV+D PGTTRD + +    +   + ++DTAG+R
Sbjct: 202 GTRIAFIGRPNAGKSTLVNTLLEEQRVIVSDTPGTTRDPVYLPFRYKDRDLVLTDTAGLR 261

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
                   +EK    ++   +E   +++L+ + +            ++F +    +    
Sbjct: 262 RRKQIARAMEKLAAIKSIRTMERTQVVVLVIDASQGVTDQDQRLARMAFERGKGVVVALH 321

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEELIN--KIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           K DL      +      ++T E L  L N   IKS +  + +          R       
Sbjct: 322 KWDLIRR-DGKLAKDTLAYTQEALGFLENPYIIKSSVIGEGRDEGKG-----RAFNLAEL 375

Query: 386 TVRYLEMASLNEKDCGLDIIAENLRLA 412
               L  A+   K      + E L+ A
Sbjct: 376 LDACLSTAAALGKRIPTSALNEELQGA 402


>gi|329962635|ref|ZP_08300583.1| ribosome biogenesis GTPase Der [Bacteroides fluxus YIT 12057]
 gi|328529666|gb|EGF56564.1| ribosome biogenesis GTPase Der [Bacteroides fluxus YIT 12057]
          Length = 437

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKSRQAIVNEEAGTTRDRQYGKTEWLGREFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +DDI E+E  K+  + V+ AD+IL + ++ +           I        + I  K+
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDLQVAAILRRAKKPVLLIANKT 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D   L     E Y       + IS+ TG G  ++++ I      + +++
Sbjct: 122 DNNELQYNAPEFYKLGLGDPYCISAVTGSGTGDMMDLIVGSFKKESEEI 170



 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 87/193 (45%), Gaps = 31/193 (16%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +  EI+     +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+  
Sbjct: 166 ESEEILDEDIPRFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDF 225

Query: 270 KISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPK 318
            + DTAGIR+ + +    E   + R+   +EN+D+ +L+ +     E        +    
Sbjct: 226 YLVDTAGIRKKNKVSEDLEYYSVIRSIRSIENSDVCILMLDATRGIESQDLNIFSLIQKN 285

Query: 319 NIDFIFIGTKSDL-------------------YSTYTEEYDHLISSFTGEGLEELINKIK 359
           +   + +  K DL                   ++ + +      S+ T + + +++ + +
Sbjct: 286 SKGLVVVVNKWDLVQDKTVKVMKTFEDAIRNRFAPFVDFPIIFASALTKQRILKVLEEAR 345

Query: 360 SILSNKFKKLPFS 372
           S+  N+  ++P +
Sbjct: 346 SVYENRMTRIPTA 358


>gi|309379417|emb|CBX21984.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 485

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  DI     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 155 LIEDILETFPEPEKEEEEAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L   I++  +    K+P    + 
Sbjct: 335 DGLFESIQAAYNAAMIKMPTPKITR 359



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                +  +        ++IS   G+G+  LI  I    
Sbjct: 125 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETF 163


>gi|149200553|ref|ZP_01877562.1| GTP-binding protein [Lentisphaera araneosa HTCC2155]
 gi|149136350|gb|EDM24794.1| GTP-binding protein [Lentisphaera araneosa HTCC2155]
          Length = 487

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 99/265 (37%), Gaps = 36/265 (13%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +      +     +  +      + + + L F     +         +++  L+ DI S+
Sbjct: 119 LRKHDKPIILAVNKCDNFELEDEASVFSALGFENTHAISC----NHKSNLDALREDICSY 174

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
                  +      +I + G  N GKSS+ N L  +D  IV+DI GTTRD + I    + 
Sbjct: 175 FPPTDEEDEASPDLRITLAGRPNVGKSSIANRLLGEDRVIVSDIAGTTRDAVDIPFSFDD 234

Query: 267 ----YLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEI 314
                   + DTAG+++    D++VEK  + RT   ++ + +IL + ++     N  K+I
Sbjct: 235 EGESRNGLLVDTAGVKKAGKIDNLVEKFSMMRTEEAIKRSTVILFVIDMSQGVTNGDKKI 294

Query: 315 S---FPKNIDFIFIGTKSDLYSTYTEE-----------------YDHLISSFTGEGLEEL 354
           +     +    + I  K DL      +                      SS  G G  +L
Sbjct: 295 ANTIKAEGKPCVVIANKWDLVKAEAPKQKFLDDLEHDLPFMRYCPIIFTSSVDGNGFRDL 354

Query: 355 INKIKSILSNKFKKLPFSIPSHKRH 379
           +     I       +P ++ +   H
Sbjct: 355 LPATLRIFEQSLVDIPTALLNQVLH 379



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 22/173 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN L +K +AIV +  G TRD +   +   GY  ++ DT G+    
Sbjct: 13  VTIVGRPNVGKSSLFNTLLRKRIAIVHEQCGVTRDRVAQPVSWNGYRYQLVDTGGLGVLS 72

Query: 282 D-----IVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIG--TK 328
           D      ++++   +  + VE++D++++L ++        ++  +F +  D   I    K
Sbjct: 73  DEKNVEFMDEKIRMQLKVAVESSDILIMLTDVKDGITELDREVCAFLRKHDKPIILAVNK 132

Query: 329 SD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D         ++S    E  H IS      L+ L   I S      ++   S
Sbjct: 133 CDNFELEDEASVFSALGFENTHAISCNHKSNLDALREDICSYFPPTDEEDEAS 185


>gi|302878616|ref|YP_003847180.1| ribosome-associated GTPase EngA [Gallionella capsiferriformans
           ES-2]
 gi|302581405|gb|ADL55416.1| ribosome-associated GTPase EngA [Gallionella capsiferriformans
           ES-2]
          Length = 470

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 27/178 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           K+ I+G  N GKS+L NA+  +   I  D PGTTRD + ID + +G    I DTAG+R  
Sbjct: 180 KLAIVGRPNVGKSTLVNAILGEQRVIAFDQPGTTRDSIYIDFERDGKQYTIIDTAGVRRR 239

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
            + ++ +EK  + +T   +E+A++++L+ +   +         +         +    K 
Sbjct: 240 GKVEEAIEKFSVIKTMQAIEDANVVVLVVDARDQITEQDAHVADFVLQAGRALVLAVNKW 299

Query: 330 DLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           D    +  E                  H IS+  G G+  ++       +    K+  
Sbjct: 300 DGLDNHQREMVKSDIERKLHFLGFAKRHYISALNGNGISNVLKSADDAYAAAMSKMST 357



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 18/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           +V++G  N GKS+LFN L +   A+V D PG TRD       +      + DT G+    
Sbjct: 5   LVLVGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRHYGRGRVGERPYLVVDTGGLEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSD-- 330
            D +  E  +++   V+ AD++L L +  +    +++             + +  K++  
Sbjct: 65  KDGIMFEMARQSRQAVDEADVVLFLVDGRAGCTPQDLIIATQLRKTGKPILLLVNKAEGM 124

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
             +  T E+        + ISS  G+ + E+I         +  +    +
Sbjct: 125 ARARVTAEFFELGLGEPYPISSAHGDNVVEVIEIALENFPEEIVEEDAVV 174


>gi|319637814|ref|ZP_07992580.1| GTP-binding protein engA [Neisseria mucosa C102]
 gi|317400969|gb|EFV81624.1| GTP-binding protein engA [Neisseria mucosa C102]
          Length = 485

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  DI     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 155 LIEDILETFPEPEKEEEEAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + +G    I DTAG+R   + D +VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFERDGKPFTIIDTAGVRRRGKVDKVVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L   I++  +    K+P    + 
Sbjct: 335 DGLFESIQAAYNAAMIKMPTPKITR 359



 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                +  +        ++IS   G+G+  LI  I    
Sbjct: 125 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETF 163


>gi|307729253|ref|YP_003906477.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1003]
 gi|307583788|gb|ADN57186.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1003]
          Length = 445

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 5/144 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D + +G    + DTAG+R
Sbjct: 179 GVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERQGKPYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335
                 + +EK  + +T   + +A++++LL +  ++++IS        F+  +       
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--ARQDISEQDAHIAGFVVEQGRALVVG 296

Query: 336 TEEYDHLISSFTGEGLEELINKIK 359
             ++D L S        +L  K+K
Sbjct: 297 VNKWDGLDSHVRERTKADLERKLK 320



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE +D+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  D           IS+  G+G+ E+IN+   +      +    
Sbjct: 125 KYSAVAADFYELGLGDPRAISAAHGDGVTEMINEALGVAYAGQPEESDD 173


>gi|170694783|ref|ZP_02885934.1| small GTP-binding protein [Burkholderia graminis C4D1M]
 gi|170140414|gb|EDT08591.1| small GTP-binding protein [Burkholderia graminis C4D1M]
          Length = 445

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 5/144 (3%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D + +G    + DTAG+R
Sbjct: 179 GVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERQGKPYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335
                 + +EK  + +T   + +A++++LL +  ++++IS        F+  +       
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--ARQDISEQDAHIAGFVVEQGRALVVG 296

Query: 336 TEEYDHLISSFTGEGLEELINKIK 359
             ++D L S        +L  K+K
Sbjct: 297 VNKWDGLDSHVRERTKADLERKLK 320



 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE +D+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
              T   D           IS+  G+G+ E+IN+   +      +   
Sbjct: 125 KYSTVAADFYELGLGDPRAISAAHGDGVTEMINEALGVAYAGQPEESD 172


>gi|42519017|ref|NP_964947.1| GTP-binding protein EngA [Lactobacillus johnsonii NCC 533]
 gi|227889871|ref|ZP_04007676.1| GTP-binding protein EngA [Lactobacillus johnsonii ATCC 33200]
 gi|268319593|ref|YP_003293249.1| GTP-binding protein engA [Lactobacillus johnsonii FI9785]
 gi|81832245|sp|Q74JL6|DER_LACJO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|41583304|gb|AAS08913.1| probable GTP-binding protein EngA [Lactobacillus johnsonii NCC 533]
 gi|227849735|gb|EEJ59821.1| GTP-binding protein EngA [Lactobacillus johnsonii ATCC 33200]
 gi|262397968|emb|CAX66982.1| GTP-binding protein engA [Lactobacillus johnsonii FI9785]
          Length = 435

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 29/185 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +  ++G  N GKSSL NA+  +   IV++I GTTRD +      +G    I DTAGIR 
Sbjct: 175 IRFSVIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRR 234

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              +    EK  + R    +E +D+ LL+ + ++            +       I +  K
Sbjct: 235 RGKVYEKTEKYSVLRAISAIEESDITLLVLDASTGIREQDKHVAGYAHDAGRGVIIVVNK 294

Query: 329 SDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL    +                        +S+ TG+ + +++  +K +  N+ +++ 
Sbjct: 295 WDLPKKDSRSMKDFEDTIRREFQYLDYAPIIFVSAKTGQRVPDILKLVKEVHENQTRRIQ 354

Query: 371 FSIPS 375
            S+ +
Sbjct: 355 SSVLN 359



 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN +    VAIV D  G TRD +    +  G+   + DT GI    
Sbjct: 6   VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLDS 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +E++   +  + ++ AD+I++L ++            ++ +      I    K+D   
Sbjct: 66  GEIEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLYRTKKPVILAINKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             T+ YD           +S   G G+ +L++ I     +K  +      
Sbjct: 126 QRTDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGDKANQHEDGSI 175


>gi|269214116|ref|ZP_05983629.2| ribosome-associated GTPase EngA [Neisseria cinerea ATCC 14685]
 gi|269144512|gb|EEZ70930.1| ribosome-associated GTPase EngA [Neisseria cinerea ATCC 14685]
          Length = 537

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  DI     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 207 LIEDILEKFPEPEKEEEEAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 266

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 267 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDVADQ 326

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 327 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 386

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L   I++  +    K+P    + 
Sbjct: 387 DGLFESIQAAYNAAMIKMPTPKITR 411



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 57  IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 116

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKNIDFIFI---------G 326
           D  +  E  K+T   V+ AD ++ L +  +      K I+         +         G
Sbjct: 117 DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 176

Query: 327 TKSDLYSTYTE---EYDHLISSFTGEGLEELINKI 358
            ++ L + + E      ++IS   G+G+  LI  I
Sbjct: 177 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDI 211


>gi|86358709|ref|YP_470601.1| GTP-binding protein EngA [Rhizobium etli CFN 42]
 gi|123511179|sp|Q2K5L2|DER_RHIEC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|86282811|gb|ABC91874.1| GTP-binding protein [Rhizobium etli CFN 42]
          Length = 473

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
            D+   +     +T   ++ ADL L + +          +  E+   +    + +  KS+
Sbjct: 63  ADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
              + +  YD           IS+  G+G+ +L + I   +
Sbjct: 123 ARGSDSGFYDAYTLGLGEPTPISAEHGQGMLDLRDAIVEAI 163



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 29/194 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R 
Sbjct: 203 LRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRR 262

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      +  A+ ++++ +     E        +   +    +    K
Sbjct: 263 KARVTEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLVLREGRAAVLAFNK 322

Query: 329 SD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D                  L           IS  TG GL++L+  I        K++ 
Sbjct: 323 WDMIEDRQAVLADLREKTDRLLPQARGIRAVPISGQTGWGLDKLMQSIIDTDRVWNKRIS 382

Query: 371 FSIPSHKRHLYHLS 384
            +  +       + 
Sbjct: 383 TARLNRWLETQQIQ 396


>gi|308535355|ref|YP_003933744.1| GTP-binding protein Era [Geobacter bemidjiensis Bem]
 gi|308052700|gb|ADO00832.1| LOW QUALITY PROTEIN: GTP-binding protein Era [Geobacter
           bemidjiensis Bem]
          Length = 297

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  R+G+ + I+G  N GKS+L N +  + + I +D P TTR+ +    ++ G  +   D
Sbjct: 4   KKFRSGF-VSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNRIKGIHNVPGGQIVFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE--INSKKEISFPK------NIDFIFI 325
           T GI      + K  +      V+  DLIL L +  ++ +KE    K      +   I +
Sbjct: 63  TPGIHRAKSRLNKFMVDEALSSVQGVDLILFLVDGAVDPEKEAGMIKEVLSGVDAPVILV 122

Query: 326 GTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL               TY  +    +S+ TG+G+E+L+  +  +L       P  
Sbjct: 123 MNKIDLVPKGELLERMSCYGDTYPFKEIIPVSAGTGDGVEQLVQLVHGLLPEGPCYFPDD 182

Query: 373 IPSHKRHLYHLSQTVR 388
           I +     + +++ VR
Sbjct: 183 ILTDVPERFIVAEIVR 198


>gi|282860196|ref|ZP_06269270.1| ribosome-associated GTPase EngA [Prevotella bivia JCVIHMP010]
 gi|282587017|gb|EFB92248.1| ribosome-associated GTPase EngA [Prevotella bivia JCVIHMP010]
          Length = 437

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L K   AIV+D+ GTTRD         G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTKTRHAIVSDVAGTTRDRQYGKCTWNGREFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E    ++  +  E ADL+L + +  +           I     +  + +  K D  
Sbjct: 65  DDIFEDAIRQQVLVATEEADLVLFVVDTETGVTDWDEDVALILRRTKLPVLLVANKVDNS 124

Query: 333 STY---------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             Y                IS+ TG G  +L++ +   + +  ++ 
Sbjct: 125 GEYYTSAEFYKLGLGDPICISAQTGGGTGDLLDILLEKMPDTPEEG 170



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 11/170 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   +       +  +  +  ++G  NAGKSSL NA   +D  IVT+I GTTRD 
Sbjct: 154 DLLDILLEKMPDTPEEGLEEDIPRFAVVGRPNAGKSSLINAFIGEDRNIVTEIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    +  G+   + DTAGIR  + +    E   + R+   +EN+D+ +L+ +     E 
Sbjct: 214 IYTRYNKFGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRSIENSDVCILMIDATRGIEA 273

Query: 315 SFP--------KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                       N   + +  K DL     ++     ++     +   ++
Sbjct: 274 QDMNIFQLIQRNNKSLVVVVNKWDLVPDKDQKVIDTFTNAIRNRMAPFVD 323


>gi|291484708|dbj|BAI85783.1| GTP-binding protein EngA [Bacillus subtilis subsp. natto BEST195]
          Length = 436

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 26/226 (11%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   T+    L++  +         +    +     +    L F 
Sbjct: 91  NGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT------EMRANI-----YDFYSLGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   +    L D   L + ++ H       +      +  ++G  N GKSSL NA+
Sbjct: 140 EPYPISG-THGLGLGD---LLDAVAEHFKNIPETKYNEEVVQFCLIGRPNVGKSSLVNAM 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+++ GTTRD +            I DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 255

Query: 297 ENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST 334
           + ++++ ++ +     I   K I   +       + +  K D    
Sbjct: 256 DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 301



 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
                YD           IS   G GL +L++ +     N
Sbjct: 126 MRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 165


>gi|254252261|ref|ZP_04945579.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158]
 gi|124894870|gb|EAY68750.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158]
          Length = 445

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GVKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSIADANVVILLLD--AQQDISDQDAHIAGFVVEQGRALVIG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  E                  H IS+    G+  L+  +    +    KL
Sbjct: 297 VNKWDGLDEHARERAKADLTRKLKFLDFAKSHFISAAKKTGIGALMRSVDDAYAAAMAKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +          S  +           +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  D           IS+  G+G+ ++IN+   +      +    
Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDMINEALEVAYADQPEEEDD 173


>gi|114319757|ref|YP_741440.1| GTP-binding protein EngA [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312352|sp|Q0AB37|DER_ALHEH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|114226151|gb|ABI55950.1| small GTP-binding protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 467

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 27/182 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKS+L N L  ++  +V D+PGTTRD + I L+ +G    + DTAG+R  
Sbjct: 183 RIAIVGRPNVGKSTLVNRLLGEERVLVYDMPGTTRDSVFIPLERDGRPYTLIDTAGMRRR 242

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKS 329
             +    EK  + +T   +E A +++L+ +                       +    K 
Sbjct: 243 ARVHETVEKFSVIQTLKAMEAAHVVILVIDAREGVTDQDTHLIGHVLESGRALVLAINKW 302

Query: 330 DLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           D  +    E                  H IS+  G G+  L   +   L    + LP  I
Sbjct: 303 DGLTAEQREAVKAGLERKLTFLNFARRHFISALHGSGVGLLFGAVDKALEAARRDLPTPI 362

Query: 374 PS 375
            +
Sbjct: 363 LN 364



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 17/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD       +      + DT G+ +  
Sbjct: 5   IALVGRPNVGKSTLFNQLTRSRDALVADHPGLTRDRQYGVGKVGERPYIVVDTGGLGDDP 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           + VE+   ++    +E AD IL L +  S    +  +              +  K+D   
Sbjct: 65  EGVEQGMHQQALAAIEEADAILFLVDGRSGPTAADEELAAHLRRQGKPVWLVVNKTDGVD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                 +           I++  G G+  L++ + + L   F     ++
Sbjct: 125 HRLATAEFHALGLGEPLPIAAAHGRGIAGLMDHVLAGLPEGFTSAHAAL 173


>gi|71902945|ref|YP_279748.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS6180]
 gi|123640474|sp|Q48V63|DER_STRPM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|71802040|gb|AAX71393.1| GTP-binding protein [Streptococcus pyogenes MGAS6180]
          Length = 436

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 92/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ++I  ++   +  E   +  +  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDEIVENLP-VEEAEENDDIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D +G    + DTAG+R++  I    EK  + R    ++ +D++L++  IN+++ 
Sbjct: 213 IDTHFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       T      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTIDKDNHTVAKWEADIRDQFQFLTYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++ K++P ++ +
Sbjct: 331 LTKQRLNKLPDLIKRISESQNKRIPSAVLN 360



 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 66  APFMEQIKHQAQIAMEEADVIVFVVSGKEGVTDADEYVSKILYRTNTPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  +++++I   L  +  +    I 
Sbjct: 126 MRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDEIVENLPVEEAEENDDII 175


>gi|296136228|ref|YP_003643470.1| ribosome-associated GTPase EngA [Thiomonas intermedia K12]
 gi|295796350|gb|ADG31140.1| ribosome-associated GTPase EngA [Thiomonas intermedia K12]
          Length = 457

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 27/189 (14%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +  +   +  ++ I G  N GKS+L NAL  ++  I  D+PGTTRD + +  + +G   
Sbjct: 182 AETTKPREHSLRLAIAGRPNVGKSTLVNALVGEERVIAFDMPGTTRDAIEVPFERDGRKF 241

Query: 270 KISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPK 318
            + DTAG+R    +    EK  + +T   +E A++++LL +               +   
Sbjct: 242 ILIDTAGLRRKGKVFEAVEKFSVIKTLQAIEQANVVVLLLDATEGVSDQDAHIASFAVEA 301

Query: 319 NIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSIL 362
               +    K D   TY  E                  H IS+ TG GL  L+  + +  
Sbjct: 302 GRALVLAANKWDAVDTYGRERLMVAIRQRLPFVSFAKFHSISARTGSGLNGLMKSVIAAH 361

Query: 363 SNKFKKLPF 371
           +  ++KLP 
Sbjct: 362 AAAYRKLPT 370



 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 82/199 (41%), Gaps = 19/199 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN + +   AIV D+PG TRD     L +    V + DT G     
Sbjct: 5   VSLVGRPNVGKSTLFNRMTRSRDAIVADMPGLTRDRHYGMLRMADRPVIVVDTGGFEPVV 64

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
           D  +  +  ++T   +  +DL++ L ++    S +++             +    K++  
Sbjct: 65  DTGIVHQMARQTRQAIAESDLVVFLVDLRTGLSPQDLHIAAELRKTGKPILLAVNKAEGR 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK-LPFSIPSHKRHLYH 382
             +    +           IS+  G+ + +L+++I   L ++  + +P +  + +     
Sbjct: 125 HGHAALAEFHELGLGEPFSISAAHGDSVPDLLDRILQALPSEPSEGIPETEAASEVAAET 184

Query: 383 LSQTVRYLEMASLNEKDCG 401
                  L +A     + G
Sbjct: 185 TKPREHSLRLAIAGRPNVG 203


>gi|187924514|ref|YP_001896156.1| GTP-binding protein EngA [Burkholderia phytofirmans PsJN]
 gi|238689579|sp|B2SXS6|DER_BURPP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|187715708|gb|ACD16932.1| small GTP-binding protein [Burkholderia phytofirmans PsJN]
          Length = 445

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 31/187 (16%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E    G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + D
Sbjct: 174 EKQTRGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLID 233

Query: 274 TAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI----- 325
           TAG+R      + +EK  + +T   + +A++++LL +  ++++IS        F+     
Sbjct: 234 TAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLD--ARQDISEQDAHIAGFVVEQGR 291

Query: 326 -----GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSN 364
                  K D    +  E                  H IS+    G+  L+  +    + 
Sbjct: 292 ALVVGVNKWDGLDPHVRERTKADLERKLKFLDFAKFHFISAAEKTGIGPLMRSVDDAYAA 351

Query: 365 KFKKLPF 371
              KLP 
Sbjct: 352 AMAKLPT 358



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADLPGLTRDRHYGEGRAGDRPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE +D+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKVGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D           IS+  G+G+ E+IN+   +      +   
Sbjct: 125 KYSNVAADFYELGLGDPRAISAAHGDGVTEMINEALEVAYAGQPEESD 172


>gi|126668584|ref|ZP_01739538.1| GTP-binding protein EngA [Marinobacter sp. ELB17]
 gi|126626989|gb|EAZ97632.1| GTP-binding protein EngA [Marinobacter sp. ELB17]
          Length = 474

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 82/217 (37%), Gaps = 32/217 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKL-----GEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
             +   +    +++ +   +   +      G     G +I I+G  N GKS+L N +  +
Sbjct: 140 QFRIAASHNRGVRSMLEILLPTPEEDADIDGAHNHPGIRIGIVGRPNVGKSTLVNRMLGE 199

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENA 299
           +  +V D+PGTTRD + I  +  G    + DTAG+R   ++    EK  I +T   +++A
Sbjct: 200 ERVVVYDLPGTTRDSIYIPYERLGQEYTLIDTAGVRRRKNVREVVEKFSIIKTLQAIDDA 259

Query: 300 DLILLLKEINSKK--------EISFPKNIDFIFIGTKSD---------LYSTYTEEYD-- 340
            +++L+ +                       +    K D         +        D  
Sbjct: 260 HVVILVIDAREGLVDQDMHLMGFVLSAGRSLVIAINKWDGMNGEDRDKVKEQIRRRLDFL 319

Query: 341 -----HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                H IS+  G G+  +   + +   +   K P +
Sbjct: 320 DYADKHYISALHGSGVGVMYQSVNACYESAMAKWPTN 356



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I ++G  N GKS+LFN + +   A+V D PG TRD    + + E     + DT G+  
Sbjct: 3   LVIALVGRPNVGKSTLFNQMTRSRDALVADFPGLTRDRKYGEGNYENQRFIVIDTGGLMG 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            +  ++    K++   VE AD++L + +  +          +           +  K+D
Sbjct: 63  DELGLDAAMAKQSLQAVEEADIVLFIVDGRAGVMPGDQVLADQLRRSGTQAHLVINKTD 121


>gi|113868334|ref|YP_726823.1| GTP-binding protein EngA [Ralstonia eutropha H16]
 gi|113527110|emb|CAJ93455.1| GTP-binding protein [Ralstonia eutropha H16]
          Length = 456

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 116/300 (38%), Gaps = 59/300 (19%)

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--DV 184
           +  ++AD +  +T  +  L++    G                  +     DF E    D 
Sbjct: 108 QDRAIADYLR-KTGRRIMLAVNKAEG----------------MKYTSVAADFYELGMGDP 150

Query: 185 QNFSSKEVLNDILFLKNDIS-SHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALA 240
              S+         +   I  +   + +LGE I +   G KI I+G  N GKS+L N L 
Sbjct: 151 YAISAAHGDGVSELVDEAIELAVQERPELGEEIPDEGKGVKIAIVGRPNVGKSTLVNTLI 210

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVE 297
            ++  I  D+PGTTRD + ++ +  G    + DTAG+R      + +EK  + +T   + 
Sbjct: 211 GEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSIA 270

Query: 298 NADLILLLKEINSKKEISFPKNIDFIFI----------GTKSDLYSTYTEEYD------- 340
           +A++++LL +  ++++IS        FI            K D    +T +         
Sbjct: 271 DANVVILLLD--AQQDISDQDAHIAGFIVESGRALVVGVNKWDGLDGHTRDRIKHDLERK 328

Query: 341 ---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                    H +S+    G+  L+  +    +    KLP    +       L + V + +
Sbjct: 329 LQFLSFANFHFVSARERTGIGALMRSVDDAFAAAMVKLPTPQLTRV-----LQEAVEFQQ 383



 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN + +   A+V D+PG TRD    +  +        DT G     
Sbjct: 14  IALVGRPNVGKSTLFNRMTRSRDALVADLPGLTRDRHYGEGRIGERPFIAIDTGGFEPVV 73

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
            + +  E  K+T   V  AD+++ + +          +  +         +    K++  
Sbjct: 74  KEGIVAEMAKQTKQAVVEADVVIFIVDGRLGLAPQDRAIADYLRKTGRRIMLAVNKAEGM 133

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              +   D           IS+  G+G+ EL+++   +   +  +L   IP
Sbjct: 134 KYTSVAADFYELGMGDPYAISAAHGDGVSELVDEAIELAVQERPELGEEIP 184


>gi|327470401|gb|EGF15857.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK330]
          Length = 436

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 90/207 (43%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + +      E+++N    K  ++G  N GKSSL NA+  +D  I + + GTTRD +  
Sbjct: 156 LDAIVENLPNEEVVKNPDMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
              D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ I  
Sbjct: 216 VFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       + +  K D                       +      +S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + IK I  ++  ++P ++ +
Sbjct: 334 QRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 17/161 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
              E +D           +SS  G G  ++++ I   L N+
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNE 166


>gi|320353154|ref|YP_004194493.1| ribosome-associated GTPase EngA [Desulfobulbus propionicus DSM
           2032]
 gi|320121656|gb|ADW17202.1| ribosome-associated GTPase EngA [Desulfobulbus propionicus DSM
           2032]
          Length = 445

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 96/248 (38%), Gaps = 42/248 (16%)

Query: 171 FIEADLDFSEEEDVQNFSSKE------------VLNDILFLKNDISSHISQGK-LGEIIR 217
           FI   +D  E ED       E                   L   +  ++ +     E+  
Sbjct: 119 FIVNKIDSPEIEDALLAPFWELGVDQLWALSGDHGYGYQTLMEGLLPYLEKTDLQTELPD 178

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  +I  LG  N GKSS+ NA+  ++  +V+DI GTTRD +   +  + Y   + DTAGI
Sbjct: 179 NTMRIAFLGRPNVGKSSMVNAIIGQERMVVSDIAGTTRDSVDTLVTRDPYTYLLIDTAGI 238

Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFI--G 326
           R   +T D +EK  + +    +   D+ L+L +          K I + ++     I   
Sbjct: 239 RRKGKTTDKLEKFSVLKALKALGRCDIALVLIDAEEGITEQDTKVIGYTQDQGRALIVLI 298

Query: 327 TKSDLYSTYTEEYDHLI------------------SSFTGEGLEELINKIKSILSNKFKK 368
            K DL     +  + L+                  S+ TG G++ L  +I  +     ++
Sbjct: 299 NKWDLIKDDKKRQEQLMQEVEIAIKFIPFAPVLKVSALTGTGIKRLFPEIGKVHRQFHQR 358

Query: 369 LPFSIPSH 376
            P +  + 
Sbjct: 359 FPTAALNR 366



 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   + ++G  N GKS+LFN + K+  A+V   PG TRD     +  E +   + DT GI
Sbjct: 5   NATLVALIGRPNVGKSTLFNRMVKRRDALVDPTPGVTRDRHYARVSWEEHPFILVDTGGI 64

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKS 329
            + DD +      +  L +E AD+I  L +             ++         FI  K 
Sbjct: 65  DDEDDTITNHIRHQALLAIEEADVIFFLMDGREGLTPSDIEIVDLLRRTEKKVFFIVNKI 124

Query: 330 D 330
           D
Sbjct: 125 D 125


>gi|225028014|ref|ZP_03717206.1| hypothetical protein EUBHAL_02283 [Eubacterium hallii DSM 3353]
 gi|224954728|gb|EEG35937.1| hypothetical protein EUBHAL_02283 [Eubacterium hallii DSM 3353]
          Length = 445

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 29/222 (13%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D    S++  L     L   +    +  +  E   +  KI ++G  NAGKSS+ N L  +
Sbjct: 146 DPIPVSAQGKLGIGDMLDQVVEKFEAPVQEEEEEDDRPKIAVIGKPNAGKSSIINKLLGE 205

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENA 299
           +  IV+ + GTTRD +   +   G      DTAG+R    I    E+  I RT   VE  
Sbjct: 206 ERVIVSPVAGTTRDAIDTTVKRNGQEYVFIDTAGLRRKSKIKEELERYSIIRTVTAVERC 265

Query: 300 DLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY-----------STYTEEYD 340
           D+ +L+ +              I+  +    I    K DL                E+  
Sbjct: 266 DVAVLIIDATEGITEQDAKIAGIAHERGKGMIIAVNKWDLVEKDNTTMKKFTEKIREKLS 325

Query: 341 HLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           ++        S+ TG+ L +L   I +++ N   ++   + +
Sbjct: 326 YMPYAELIFLSAKTGQRLPKLFEMIDAVIENCALRVQTGVLN 367



 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 9/134 (6%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E I +   + ++G  N GKS+LFNALA   ++IV D PG TRD +  ++    Y   + D
Sbjct: 2   EEIMSKPVVAVVGRPNVGKSTLFNALAGSRISIVEDTPGVTRDRIYAEVSWLDYQFTLID 61

Query: 274 TAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIF 324
           T GI  E+DDI+     ++    +  AD+IL L ++            ++    +   + 
Sbjct: 62  TGGIEPESDDIIISRMREQAETAIMTADVILFLVDVRQGLVDADFKVADMLRRSHRPVVL 121

Query: 325 IGTKSDLYSTYTEE 338
           +  K D +  +  +
Sbjct: 122 VVNKVDNFDKFMPD 135


>gi|46447114|ref|YP_008479.1| hypothetical protein pc1480 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81697623|sp|Q6MB45|DER_PARUW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|46400755|emb|CAF24204.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 487

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 108/282 (38%), Gaps = 43/282 (15%)

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +AE    +  ++T +Q   +  G++ EL     + + +           +D   +  + +
Sbjct: 77  QAE--IAIEEADTIVQVVDAHVGLT-ELDKEVARVLLRTKKPVCLAVNKIDNLSQTSLMH 133

Query: 187 FSSKEVLNDILFLKN----DISSHISQGKLGEIIRN--------GYKIVILGHSNAGKSS 234
                 +  ++ +       I+  +      +I R           K+ I+G +N GKSS
Sbjct: 134 QFHSLGIKQMIPVSAAQGWQIAELLETA-FEKISREIESQETFSSIKVAIVGRANVGKSS 192

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKR 291
           L N L  +D  IV+ IPGTTRD + I    +     + DTAGIR      E   K    R
Sbjct: 193 LVNYLLDEDRCIVSPIPGTTRDSVDISFTHKDECYTLIDTAGIRRKRAEHEVVDKFAAIR 252

Query: 292 TFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEY---- 339
           T   +E ADL +L+ ++         K            I +  K DL   +  E+    
Sbjct: 253 TERAIERADLCVLMLDVQEGITAQDKKIANTIEEAGQGCIILLNKWDLVQGFRMEHCLQN 312

Query: 340 ------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
                           S+ TG  +++L   I+ + +N  K++
Sbjct: 313 LEEEVPFLRHCPKIFTSAKTGRNIDKLFPLIQEVYANSQKRI 354



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 15/190 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-E 279
           K+ I+G  N GKS+LFN + K+ +AIV +  G TRD L  + +L G   ++ DT GI   
Sbjct: 6   KLAIVGRPNVGKSALFNRICKQKIAIVDEAEGITRDRLYAEGELFGLHFQVIDTGGINAR 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDL 331
           + ++  +E  ++  + +E AD I+ + +              +             K D 
Sbjct: 66  SKEVFNEEIKRQAEIAIEEADTIVQVVDAHVGLTELDKEVARVLLRTKKPVCLAVNKIDN 125

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            S  +      +  F   G++++I    +      + L  +     R +    +T   ++
Sbjct: 126 LSQTSL-----MHQFHSLGIKQMIPVSAAQGWQIAELLETAFEKISREIES-QETFSSIK 179

Query: 392 MASLNEKDCG 401
           +A +   + G
Sbjct: 180 VAIVGRANVG 189


>gi|284116005|ref|ZP_06386701.1| GTP-binding protein engA [Candidatus Poribacteria sp. WGA-A3]
 gi|283829542|gb|EFC33894.1| GTP-binding protein engA [Candidatus Poribacteria sp. WGA-A3]
          Length = 435

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 11/171 (6%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +   +D     S E  + +  L       +       +     ++ ++G  N GKS+L N
Sbjct: 133 YHLGKDTLFPISAEHGHGVDELLEAFLHLLPAHDEDLMETATTRVAMVGRPNVGKSTLVN 192

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFL 294
            +  ++ A+V+D+PGTTRD +   L+ EG    ++DTAG+R    +   +E   + RT  
Sbjct: 193 TILGEERAVVSDVPGTTRDPIDTHLEREGRTFLLTDTAGLRRRGRVEPGIEGYSVARTMR 252

Query: 295 EVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
            +  +D+ +LL +              +   +    + +  K DL     E
Sbjct: 253 ALGRSDIGVLLLDGVEGVTDQDTKIAGLIQRQGRGCVMLVNKWDLRRNQRE 303



 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 18/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN +     AIV D PG TRD +  +   +G   ++ DT G+  T 
Sbjct: 4   VAVIGRPNVGKSTLFNRILGTRNAIVDDRPGVTRDRIYAECTYQGRRFQVVDTGGLDPTS 63

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDLY 332
            D +     +++   +  AD++L++ +         +EI       +    ++  K D  
Sbjct: 64  TDDMLGLIRRQSQAALAAADILLVIMDGRDGLTPMDREIVDGLHGVDKPTFWVVNKVDTP 123

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           +      D            S+  G G++EL+     +L    + L  +  + 
Sbjct: 124 ALEPLLADFYHLGKDTLFPISAEHGHGVDELLEAFLHLLPAHDEDLMETATTR 176


>gi|255326187|ref|ZP_05367273.1| ribosome-associated GTPase EngA [Rothia mucilaginosa ATCC 25296]
 gi|255296641|gb|EET75972.1| ribosome-associated GTPase EngA [Rothia mucilaginosa ATCC 25296]
          Length = 526

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 134/347 (38%), Gaps = 62/347 (17%)

Query: 86  HGGIAVVNGIL---EELAKM-PNL---RLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
            G   ++N IL   E + +  P +   R++   E+  ++F    +D    ES A  I ++
Sbjct: 85  VGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWLGKSF--TLVDTGGWESDARGIDAQ 142

Query: 139 TEMQRRLSMEGMSG----------------ELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
              Q  +++E                    ++  +  +    +  I + I+      E  
Sbjct: 143 VAEQAEIAVEQADVVVLVVDARVGVTASDEQIVRMLRRVKKPIILIANKIDDAHLEPEIY 202

Query: 183 DVQNFSSKEVLN----DILFLKNDISSHIS------QGKLGEIIRNGYKIVILGHSNAGK 232
           ++ +    +           L + +   +       Q    E +    ++ ++G  N GK
Sbjct: 203 NLWSLGMGQPFPVSGLHGRGLADALDEILEVMPEHSQFAQPEALGGPRRVALVGRPNVGK 262

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289
           SSL N LA  + A+V D+ GTTRD +   ++L GY  +  DTAGIR    +    E    
Sbjct: 263 SSLLNKLAGSERAVVNDLAGTTRDPIDEIIELGGYPWRFVDTAGIRRRQHMAKGAEFYSS 322

Query: 290 KRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD---------LY 332
            RT   +E +++ ++L +++   S++++   +         +    K D         L 
Sbjct: 323 LRTQTALERSEVAVVLLDVSEPISEQDVRIVQTVIDSGRAMVLAFNKWDTLDEDRRDMLE 382

Query: 333 STYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                +  H        IS+ TG   ++L+  ++  L +   ++P  
Sbjct: 383 REIDRDLAHVQWAPRVNISAKTGWHKDKLVPALEHSLESWDSRIPTG 429



 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 91/238 (38%), Gaps = 30/238 (12%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           + G   ++     +  D+    R+   A L+  E+ D+       +      ++++    
Sbjct: 15  LGGGEDDVIERLAEIDDETADQRAQ--ALLEGLEDYDLDEEDRALLGAWGFDIEDEEEQL 72

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
                          + I+G  N GKS++ N +  +  A+V D PG TRD ++   +  G
Sbjct: 73  AD-----------PVVAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWLG 121

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL------KEINSKKEISFPK-- 318
               + DT G       ++ +  ++  + VE AD+++L+         + ++ +   +  
Sbjct: 122 KSFTLVDTGGWESDARGIDAQVAEQAEIAVEQADVVVLVVDARVGVTASDEQIVRMLRRV 181

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFK 367
               I I  K D      E Y+           +S   G GL + +++I  ++    +
Sbjct: 182 KKPIILIANKIDDAHLEPEIYNLWSLGMGQPFPVSGLHGRGLADALDEILEVMPEHSQ 239


>gi|189463677|ref|ZP_03012462.1| hypothetical protein BACINT_00008 [Bacteroides intestinalis DSM
           17393]
 gi|189438627|gb|EDV07612.1| hypothetical protein BACINT_00008 [Bacteroides intestinalis DSM
           17393]
          Length = 437

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 31/193 (16%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
              EI+     +  ++G  NAGKSS+ NA   ++  IVT+I GTTRD +    +  G+  
Sbjct: 166 DTDEILDEDIPRFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDF 225

Query: 270 KISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPK 318
            + DTAGIR+ + +    E   + R+   +ENAD+ +L+ +     E        +    
Sbjct: 226 YLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENADVCILMLDATRGVESQDLNIFSLIQKN 285

Query: 319 NIDFIFIGTKSDL-------------------YSTYTEEYDHLISSFTGEGLEELINKIK 359
               + +  K DL                   ++ + +      S+ T + + +++ + +
Sbjct: 286 AKGLVVVVNKWDLVQDKTVKVMKTFEDAIRSRFAPFVDFPIIFGSALTKQRILKVLEEAR 345

Query: 360 SILSNKFKKLPFS 372
           S+  N+  ++P +
Sbjct: 346 SVYDNRMTRIPTA 358



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 18/158 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGKEFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +DDI E+E  K+  + V+ AD+IL + ++ +           I        + I  K+
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDMQVAAILRRTQKPVLLIANKT 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKI 358
           D   L     E Y       + IS+ TG G  ++++ I
Sbjct: 122 DNGELQYNAPEFYKLGLGDPYCISAMTGSGTGDMMDLI 159


>gi|330752472|emb|CBL87421.1| GTP-binding protein engA [uncultured Flavobacteria bacterium]
          Length = 435

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 24/192 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKS+  N +  ++  IVTDI GTTRD +     + G+  +I DTAG+R+ 
Sbjct: 177 KLAVVGKPNVGKSTFINTILGEERNIVTDIAGTTRDSVHTHYQMFGFDFEIVDTAGLRKK 236

Query: 281 D---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------FIFIGTKS 329
               D +E     RT   ++ +D+ LL+ + +                     + +  K 
Sbjct: 237 KQVTDHLEFYSTVRTIKAIDESDVCLLMLDGSDPMGRQDLNIFWQIVESYRGVVVVVNKW 296

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           DL    T          T   +EE+I +  S     F  +P    S+ +    L      
Sbjct: 297 DLVEKETN---------TMRDMEEMIRERTS----PFTDIPIVFTSNVKKQRVLQALETA 343

Query: 390 LEMASLNEKDCG 401
           LE+         
Sbjct: 344 LEVRQARASKVP 355



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AI  D  GTTRD     +    +   + DT G I ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTETREAITDDTSGTTRDRKYGTVVWTNHQFNVIDTGGWITKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTKSD-- 330
           DD  E     +  + +E ADLIL + EI     +  ++I+          + +  K D  
Sbjct: 65  DDSFEAAIRGQVEISLEEADLILFMVEIEVGITDLDQDIANLLRRTGKPIMLVCNKVDTS 124

Query: 331 LYSTYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            +    EE+         + IS+  G G  EL++ +   L    ++    +P
Sbjct: 125 AHDVGAEEFYRLGLADEIYRISANNGYGTGELLDAVVDALPPMPEQEELGLP 176


>gi|331005663|ref|ZP_08329030.1| GTP-binding protein EngA [gamma proteobacterium IMCC1989]
 gi|330420521|gb|EGG94820.1| GTP-binding protein EngA [gamma proteobacterium IMCC1989]
          Length = 482

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 27/189 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+L N +  +D  +V D  GTTRD + I+ +  G    I DTAGIR 
Sbjct: 191 IKIAIVGRPNVGKSTLVNRMLGEDRVVVYDEAGTTRDSIYINYERHGKPYTIIDTAGIRR 250

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINS---KKEISF-----PKNIDFIFIGTK 328
             +I   VEK  I +T   +E+A++++LL + +     +++             +    K
Sbjct: 251 RKNISLTVEKFSIVKTLQSIEDANVVVLLLDASEGVVDQDLHLMGHVIESGRALVVALNK 310

Query: 329 SDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D      +EY                 H IS+  G G+  L   I+   ++   +   +
Sbjct: 311 WDGLEAEFKEYVKSELERRLRFVDFADMHFISALHGTGVGNLYKSIEKAFASATDRFSTN 370

Query: 373 IPSHKRHLY 381
             ++   + 
Sbjct: 371 HLTNVLQMA 379



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 17/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L ++  AIV D  G TRD    ++  E       DT G+   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRRRDAIVADFAGLTRDRQYGEVIWEERRFLFVDTGGLSGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           + ++    +++ L +E ADL+L + +  +     +I+  K+        + +  K D + 
Sbjct: 65  EGIDSAMAEQSLLAIEEADLVLFMVDCKAGLLPSDIAIAKHLRTTEKKVLIVANKVDGHD 124

Query: 334 ---------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                           H  ++  G G+  L+ ++ + L      +  +I
Sbjct: 125 PDVVIGPFYELGLGEIHATTATHGRGVNLLMQQVDTCLPVVIDDVTENI 173


>gi|313888319|ref|ZP_07821990.1| ribosome biogenesis GTPase Der [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845722|gb|EFR33112.1| ribosome biogenesis GTPase Der [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 446

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 110/277 (39%), Gaps = 39/277 (14%)

Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187
           AE +       T+ +    +     ++     ++  K+T    +   +L   E   +   
Sbjct: 94  AEGVN-----PTDREISNFLRKTKTKVVLAVNKYDSKITKDNIYDFYELGLGEPIGI--- 145

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           S+++       L   +       +L E   +  ++ ++G  N GKSSL N L  ++ +IV
Sbjct: 146 SAEQGTGVGDLLDEAVDGLTPVDELEE--DDNIRVTLIGKPNVGKSSLLNYLTGENRSIV 203

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILL 304
           T+IPGTTRD +   +  +G      DTAG+R+   I   VE+  + RT   +E +++ +L
Sbjct: 204 TNIPGTTRDSIDSLIKYKGNEYIFVDTAGLRKKKKIVPGVERYSVIRTLTAIERSNVCVL 263

Query: 305 LKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTYTE------------------E 338
           + +         +     +   N   I    K D     T+                   
Sbjct: 264 MIDALEGVTEQDSKIVGYAHDNNKAIIIAVNKWDALEKETKTMRNFEKKIREELPFVTYA 323

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
               IS+ TG+ + E ++ I+ + +N   ++   + +
Sbjct: 324 PIVFISAKTGQRVNEFLDMIELVNNNYNHRIQTGVLN 360



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 18/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +  + V+I  D PG TRD +        Y   + DT G+   D
Sbjct: 6   ISIIGRPNVGKSTLFNKIVGRKVSITEDTPGVTRDRIYQPATWLNYKFLLVDTGGLDLKD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIG--TKSDLY 332
           + +    IK +  + +E +D+++ + +         ++  +F +      +    K D  
Sbjct: 66  EDIFMSSIKAQIDIALETSDVVIFVVDGAEGVNPTDREISNFLRKTKTKVVLAVNKYDSK 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINK 357
            T    YD           IS+  G G+ +L+++
Sbjct: 126 ITKDNIYDFYELGLGEPIGISAEQGTGVGDLLDE 159


>gi|288575053|ref|ZP_06393410.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570794|gb|EFC92351.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 444

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 12/154 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   + +        +  K+ ++G  N GKSS+ N L  ++ ++V+D+PGTTRD 
Sbjct: 154 DLLDRVCELLPEDDRFFEEEDEIKVALVGRPNVGKSSILNRLLGENRSLVSDVPGTTRDS 213

Query: 258 LTIDLDL-EGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI----- 308
           +   ++L +G  +++ DTAG+R      D +E     RT   ++ +D+ +L+ +      
Sbjct: 214 IDSLMELDDGRKLRLIDTAGLRRKSRFKDDIEYYSFVRTMESIDRSDVSILVVDAVEGVT 273

Query: 309 NSKKEIS---FPKNIDFIFIGTKSDLYSTYTEEY 339
           +  K+++     +    + +  K DL     E  
Sbjct: 274 DQDKKLASSIVERGKGIVLVMNKWDLLKGDGERI 307



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 23/165 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN L  +  AIV D+PG TRD L   ++  G    + DT G+   D
Sbjct: 4   VTIVGRPNVGKSSLFNRLIGERRAIVDDVPGVTRDRLYGQVEWRGNSFYLVDTGGLLLRD 63

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSKKEISFPKNI-----------DFIFIGTKS 329
           +    EG+K +    +E +D+ILL   ++ ++ +++                 I +  K 
Sbjct: 64  EDPIMEGMKGQIVQAMEESDVILL--SVDGREGLTWMDEDIAMVIRKSAPKPVIVVVNKL 121

Query: 330 D-------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNK 365
           D       +Y  Y   +     IS+    G+++L++++  +L   
Sbjct: 122 DDMKFDELVYEAYGLGFQDVVGISAIHARGIDDLLDRVCELLPED 166


>gi|313206833|ref|YP_004046010.1| ribosome-associated GTPase enga [Riemerella anatipestifer DSM
           15868]
 gi|312446149|gb|ADQ82504.1| ribosome-associated GTPase EngA [Riemerella anatipestifer DSM
           15868]
 gi|315023907|gb|EFT36909.1| GTP-binding protein EngA [Riemerella anatipestifer RA-YM]
 gi|325335727|gb|ADZ12001.1| Predicted GTPase [Riemerella anatipestifer RA-GD]
          Length = 435

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 11/151 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +     +  +      +I I G  N GKS+L NAL      IVTDI GTTRD 
Sbjct: 154 DLLDAVVADFPTTEYKDPFDGLPRITIAGRPNVGKSTLTNALLDNKRNIVTDIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAG+R+   +    E   + R+   +E++D+++++ +     E 
Sbjct: 214 IETIYNKFGHEFVLVDTAGMRKKSKVSENLEFYSVMRSVRAIEHSDVVVIMVDATQGWES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTE 337
                  I+       + +  K DL    T 
Sbjct: 274 QDMNIFGIAQKNRKGIVILVNKWDLVEKETN 304



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 66/169 (39%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L ++  AIV  + G TRD      +  G    + DT G    T
Sbjct: 5   VAIVGRPNVGKSTLFNRLLERREAIVDSVAGVTRDRHYGKSEWNGVEFTVIDTGGYDVGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E+E   +  L V+ A  I+ +  +            E+    N     +  K D  
Sbjct: 65  DDIFEEEIRHQVQLAVDEATSIIFMLNVEEGLTDTDQEIHELLRRSNKPIYIVVNKVDSA 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  +            SS TG G  +L++ + +       K PF 
Sbjct: 125 KEELPATEFYQLGIEKYYTLSSATGSGTGDLLDAVVADFPTTEYKDPFD 173


>gi|281206920|gb|EFA81104.1| GTP-binding protein engA [Polysphondylium pallidum PN500]
          Length = 795

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 103/257 (40%), Gaps = 29/257 (11%)

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSET-------EMQRRLSMEGMSGELSS 156
              LA+   FS    E   + + EA+++  L+ ++T       E+ R L      G+   
Sbjct: 172 GEALAHTDRFSTAIKEQATVAMDEADAIIFLLDAKTGITSVDKELARMLRNRASKGQKVF 231

Query: 157 LY------GQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
           L        Q IDKL          L F E           VL     +   +       
Sbjct: 232 LGINKADNDQLIDKLPR---DELVRLGFGEPYAFSAIHGGGVLGLFDSVLKSLPLPKDNE 288

Query: 211 KLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYL 268
            LG+  +N   KI I+G  NAGKSSL N +  ++ AIV+D+ GTT D +       E + 
Sbjct: 289 LLGDPQQNTSIKISIVGQPNAGKSSLLNQIIGEERAIVSDVAGTTHDPVDCQFLWRENHD 348

Query: 269 VKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEIS-----FP 317
           + + DTAGIR         EK  +      +E + ++L++ +     + +++        
Sbjct: 349 LTLIDTAGIRRRSTHKVGLEKSSVLWAMKAIERSQVVLMVIDATVGITDQDLKIAGFILE 408

Query: 318 KNIDFIFIGTKSDLYST 334
            N   + +  K DLY+ 
Sbjct: 409 NNKSVMILVNKWDLYTQ 425



 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 27/169 (15%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           I I+G  N GKS+LFN +      A+V +IPGTTRD    D  L G   ++ DT G+   
Sbjct: 114 IAIIGKPNVGKSTLFNRVVQGGRQALVENIPGTTRDRYYSDAFLYGRQFQLVDTGGLVGE 173

Query: 281 ----DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFP------KNIDFIFI 325
                D       ++  + ++ AD I+ L +  +      KE++        K       
Sbjct: 174 ALAHTDRFSTAIKEQATVAMDEADAIIFLLDAKTGITSVDKELARMLRNRASKGQKVFLG 233

Query: 326 GTKSD---LYSTYTEE--------YDHLISSFTGEGLEELINKIKSILS 363
             K+D   L      +          +  S+  G G+  L + +   L 
Sbjct: 234 INKADNDQLIDKLPRDELVRLGFGEPYAFSAIHGGGVLGLFDSVLKSLP 282


>gi|291543008|emb|CBL16118.1| ribosome-associated GTPase EngA [Ruminococcus bromii L2-63]
          Length = 440

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 19/178 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   I ++G  N GKS+LFN L  + ++IV D PG TRD +  +++  G    I DT GI
Sbjct: 2   NKPVIAVVGRPNVGKSTLFNKLIGQRLSIVDDTPGVTRDRIYGEVEWCGKTAFIVDTGGI 61

Query: 278 R-ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
             ++DDI+  +  ++  L ++ A++I+L+ +  S          ++        +    K
Sbjct: 62  EPKSDDIILVQMRRQAQLAIDTANVIILVTDCKSGMVATDMDVAQMLQKSGKPVVLCVNK 121

Query: 329 SDLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            D     + E+             +S+  G G  +L++K  S               +
Sbjct: 122 CDTLGEPSPEFYEFYNLGLGDPIEVSAVHGYGTGDLLDKAFSSFDYDENAEDDDTIIN 179



 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 82/218 (37%), Gaps = 34/218 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +   S     +  E       + ++G  NAGKSSL N +  ++  IV+DI GTTRD 
Sbjct: 156 DLLDKAFSSFDYDENAEDDDTIINVAVIGKPNAGKSSLVNKITNEERCIVSDIAGTTRDT 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   ++ +      +DTAG+R      D +EK  I R  + +E +D+ +++ +       
Sbjct: 216 IDTLVENKYGKFNFTDTAGLRRQSKIYDNIEKYSIIRAKMAIERSDVCVIMIDATEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
                  ++       I    K D      +                       IS+ TG
Sbjct: 276 QDTKVAGLAHEAGRACIIAVNKWDAVEKNDKTMQEFRKKLDADFAFMSYAPKVFISAKTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
             ++ L   I S   +  +++   + +       L+Q 
Sbjct: 336 MRIDRLFEYIISCNDSANRRIRTGMLN-----ELLAQA 368


>gi|299821633|ref|ZP_07053521.1| ribosome-associated GTPase EngA [Listeria grayi DSM 20601]
 gi|299817298|gb|EFI84534.1| ribosome-associated GTPase EngA [Listeria grayi DSM 20601]
          Length = 447

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 15/150 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H       E   +  K  ++G  N GKSS+ NAL  ++  IV+DI GTTRD 
Sbjct: 165 DLLDEVRKHFPAEDEVEEDDDIIKFSLIGRPNVGKSSILNALLGEERVIVSDIAGTTRDA 224

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +      +     + DTAG+R+   +    EK  + R    +E +D++L++  +N+++ I
Sbjct: 225 IDTSYIYDDQEYIMIDTAGMRKRGKVYEGTEKYSVLRAMRAIERSDVVLVV--LNAEEGI 282

Query: 315 ----------SFPKNIDFIFIGTKSDLYST 334
                     +       + +  K D    
Sbjct: 283 REQDKKIAGYAHDAGRAIVIVVNKWDAIEK 312



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 18/170 (10%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K GEI+     + I+G  N GKS++FN +  + ++IV D+PG TRD +    +  G    
Sbjct: 7   KEGEIMVKPV-VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYNSAEWLGKDFN 65

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDF 322
           I DT GI  +D+    +   +  + ++ AD+I+        + + + +  +I +      
Sbjct: 66  IIDTGGIDLSDEPFLDQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSQKPV 125

Query: 323 IFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
           +    K D     T+ YD           IS   G GL +L+++++    
Sbjct: 126 VLAINKVDNPEMRTQIYDFYSLGFGEPFPISGSHGLGLGDLLDEVRKHFP 175


>gi|206560243|ref|YP_002231007.1| GTP-binding protein EngA [Burkholderia cenocepacia J2315]
 gi|238693091|sp|B4EAW5|DER_BURCJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|198036284|emb|CAR52180.1| GTP-binding protein EngA [Burkholderia cenocepacia J2315]
          Length = 445

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--AQQDISDQDAHIAGFVVEQGRALVIG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D +  +  +                  H IS+    G+  L+  +    +    KL
Sbjct: 297 VNKWDGFDDHARDRAKADLTRKLKFLDFAKSHFISAAKKTGIGALMRSVDDAYAAAMSKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                  D           IS+  G+G+ ++IN+   +      + 
Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDMINEALEVAYAGQPEE 170


>gi|253699692|ref|YP_003020881.1| GTP-binding protein Era [Geobacter sp. M21]
 gi|259645946|sp|C6E2H7|ERA_GEOSM RecName: Full=GTPase Era
 gi|251774542|gb|ACT17123.1| GTP-binding protein Era [Geobacter sp. M21]
          Length = 297

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  R+G+ + I+G  N GKS+L N +  + + I +D P TTR+ +    ++ G  +   D
Sbjct: 4   KKFRSGF-VSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNRIKGIHNVPGGQIVFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE--INSKKEISFPK------NIDFIFI 325
           T GI      + K  +      V+  DLIL L +  ++ +KE    K      +   I +
Sbjct: 63  TPGIHRAKSRLNKFMVDEALSSVQGVDLILFLVDGAVDPEKEAGMIKEVLSGVDAPVILV 122

Query: 326 GTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL               TY  +    +S+ TG+G+E+L+  +  +L       P  
Sbjct: 123 MNKIDLVPKGELLERMSCYGDTYPFKEIIPVSAGTGDGVEQLVQLVHGLLPEGPCYFPDD 182

Query: 373 IPSHKRHLYHLSQTVR 388
           I +     + +++ VR
Sbjct: 183 ILTDVPERFIVAEIVR 198


>gi|189485147|ref|YP_001956088.1| GTP-binding protein EngA [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287106|dbj|BAG13627.1| GTP-binding protein EngA [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 441

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 99/233 (42%), Gaps = 23/233 (9%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            T++Q    +     +   +  +   +   I+ +   +L F +      F S      + 
Sbjct: 99  PTDVQIAQQIRLKRKKTILVVNKIDTQAEEIKGYEFYELGFDDVI----FVSANHGRSVH 154

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I  +I   +  +      KI+++G  N GKSS  N +AK++ +IV D PGTTRD 
Sbjct: 155 DLLDKIWENIKYDRKEKNTWKTLKIILVGKPNVGKSSFINTVAKEERSIVHDTPGTTRDS 214

Query: 258 LTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           LT  +  +G    ++DTAG+    +T D +E      T   +E+AD+ +L+ + +     
Sbjct: 215 LTARIQSDGKEYILTDTAGLHRGNKTKDGMEYLSNLSTGHAIEDADVAVLIADASQGIGE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
                  +   K    I    K DL     EE +     FTG+    L  +IK
Sbjct: 275 TEVKIARLLLEKKKPVIVTVNKWDLI----EEKEEAAKYFTGQ----LRERIK 319



 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 19/158 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+LFN L  +  AI+ + PGTTRD    ++         +DTAG    
Sbjct: 6   KVAIVGRPNVGKSALFNRLIGRKKAIIHETPGTTRDRNDHEVSWRDKNFIATDTAGWSTD 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIGTKSDL 331
                K+  ++  + VE +D++L +          ++   ++I   +    I +  K D 
Sbjct: 66  ISAFSKDMSRQLDIAVEKSDIVLFVVDGKTGAHPTDVQIAQQIRLKRK-KTILVVNKIDT 124

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKS 360
            +   + Y+            S+  G  + +L++KI  
Sbjct: 125 QAEEIKGYEFYELGFDDVIFVSANHGRSVHDLLDKIWE 162


>gi|146319380|ref|YP_001199092.1| GTP-binding protein EngA [Streptococcus suis 05ZYH33]
 gi|146321585|ref|YP_001201296.1| GTP-binding protein EngA [Streptococcus suis 98HAH33]
 gi|253752406|ref|YP_003025547.1| GTP-binding protein EngA [Streptococcus suis SC84]
 gi|253754232|ref|YP_003027373.1| GTP-binding protein EngA [Streptococcus suis P1/7]
 gi|253756166|ref|YP_003029306.1| GTP-binding protein EngA [Streptococcus suis BM407]
 gi|166225866|sp|A4W3F7|DER_STRS2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225868|sp|A4VX53|DER_STRSY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145690186|gb|ABP90692.1| Predicted GTPase [Streptococcus suis 05ZYH33]
 gi|145692391|gb|ABP92896.1| Predicted GTPase [Streptococcus suis 98HAH33]
 gi|251816695|emb|CAZ52336.1| GTP-binding protein EngA [Streptococcus suis SC84]
 gi|251818630|emb|CAZ56464.1| GTP-binding protein EngA [Streptococcus suis BM407]
 gi|251820478|emb|CAR47214.1| GTP-binding protein EngA [Streptococcus suis P1/7]
 gi|319758811|gb|ADV70753.1| GTP-binding protein EngA [Streptococcus suis JS14]
          Length = 436

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      +    E    I +  N   I +  K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGVTDADEYVSRILYKTNKPVILVVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  +  +    I 
Sbjct: 126 MRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIIENLPAQEAEENPDII 175



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  K  ++G  N GKSSL NA+  ++  I + + GTTRD 
Sbjct: 154 DVLDAIIENLP-AQEAEENPDIIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    +E +D+IL++  IN+++ 
Sbjct: 213 IDTHFTDPEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIERSDVILMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKQWEDDIRDQFQYLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK+I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPEMIKAISESQNTRIPSAVLN 360


>gi|330719101|ref|ZP_08313701.1| GTP-binding protein Der [Leuconostoc fallax KCTC 3537]
          Length = 436

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 107/282 (37%), Gaps = 46/282 (16%)

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           G+  L EA+ +   +  +T+    L++  +         +    +    +    D     
Sbjct: 92  GREGLTEADEVVAKLLYKTDKPVVLAINKVDNP------EMRADIYEFYALGLGD----- 140

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
                   S      +  L ++I  H    +  E   +  +  I+G  N GKSS+ NA+ 
Sbjct: 141 ----PFPISGSHGLGLGDLLDEIVKHFPD-EAAEQEDDAIRFSIIGRPNVGKSSIVNAIL 195

Query: 241 KKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
            ++  IV+DI GTTRD +    +  +G    + DTAG+R+   +    EK  + R    V
Sbjct: 196 GEERVIVSDIEGTTRDAIDSRFMTADGDEFVMVDTAGMRKRGKVYENTEKYSVLRALKAV 255

Query: 297 ENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTE----------- 337
           + +++IL++ +  +            +       I +  K D     T+           
Sbjct: 256 DESNVILMVIDAEAGIREQDKHVAGFAHEAGRSMIIVVNKWDAIDKNTKTMQEFEETIRT 315

Query: 338 -------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                       +S+ TG+ L+ L   IK + +N  K++  S
Sbjct: 316 EFKFLDYAPIVFVSAKTGQRLDRLPQLIKDVDANHRKRISSS 357



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + +AIV D+PG TRD L    D   Y  KI DT GI   +
Sbjct: 6   VAIVGRPNVGKSTIFNRMAGERIAIVEDLPGVTRDRLYASADWLNYDFKIIDTGGIEIGN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           +    E   +  + +E AD+I+++               ++ +  +   +    K D   
Sbjct: 66  EPFLSEIRGQVEIALEEADVIVMVASGREGLTEADEVVAKLLYKTDKPVVLAINKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + Y+           IS   G GL +L+++I     ++  +      
Sbjct: 126 MRADIYEFYALGLGDPFPISGSHGLGLGDLLDEIVKHFPDEAAEQEDDAI 175


>gi|153843824|ref|ZP_01993596.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810]
 gi|149745287|gb|EDM56538.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810]
          Length = 286

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 28/217 (12%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L    +    DL  SE E+ +     E   D     ++ +   ++ +   +     K+ I
Sbjct: 71  LERALAPFFDDLLTSESEEGEIEDLTEF-EDAEIAPDEYTEEEAEAEFQRLQEQPIKLAI 129

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +G    I DTAG+R    I 
Sbjct: 130 IGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRRGRIN 189

Query: 285 ---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD--- 330
              EK  + +T   VE+A+++LL+ +     S +++S            +    K D   
Sbjct: 190 ETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWDGLD 249

Query: 331 --LYSTYTEEYD-----------HLISSFTGEGLEEL 354
             +     +E D           H IS+  G G+  L
Sbjct: 250 NEVKENVKKELDRRLGFVDFARIHFISALHGTGVGHL 286


>gi|292559009|gb|ADE32010.1| Small GTP-binding domain containing protein [Streptococcus suis
           GZ1]
          Length = 436

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      +    E    I +  N   I +  K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGVTDADEYVSRILYKTNKPVILVVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  +  +    I 
Sbjct: 126 MRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIIENLPAQEAEENPDII 175



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  K  ++G  N GKSSL NA+  ++  I + + GTTRD 
Sbjct: 154 DVLDAIIENLP-AQEAEENPDIIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    +E +D+IL++  IN+++ 
Sbjct: 213 IDTHFTDPEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIERSDVILMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKQWEDDIRDQFQYLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK+I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPEMIKAISESQNTRIPSAVLN 360


>gi|332970913|gb|EGK09889.1| ribosome-associated GTPase EngA [Psychrobacter sp. 1501(2011)]
          Length = 473

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 113/306 (36%), Gaps = 53/306 (17%)

Query: 130 SLADLISSETEMQRRLS---------MEGMSGELSSLYGQWIDKLTHIRSFIEADLD--- 177
            + D +S+++      +           GM G  +   G+ +  L      +   +D   
Sbjct: 71  GIDDYMSAQSHTAIHEADIIVFVVDARAGMIGADAE-IGKMLHTLGKPVYLVANKIDGVH 129

Query: 178 -------FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
                  ++         +      I  L +D++ ++ +  + E  + G K+ I+G  N 
Sbjct: 130 DAAPAEFYALGLGEPYPMTASHGRGIGNLLDDLTENMPE-DVEEEDQGGLKLAIIGRPNV 188

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKE 287
           GKS+L N +  +D  +V D+PGTTRD + I  +  G    + DTAG+R     D+ VEK 
Sbjct: 189 GKSTLVNRMLGEDRVVVYDMPGTTRDSIYIPYERNGKNYVLIDTAGVRRRGRIDEKVEKF 248

Query: 288 GIKRTFLEVENADLILLLKEI----------------NSKKEISFPKNIDFIFIGTKSDL 331
            + +T   ++++++++ + +                 ++ + I    N        + DL
Sbjct: 249 SVVKTLQAIKDSNVVVAVIDAQEGIVDQDLHMLGYALDAGRAIVVAINKWDGLSDDQKDL 308

Query: 332 YSTYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                E           H IS+  G  +  L   I     +   K+  +     R    L
Sbjct: 309 IRFEIERRFNFIPYVKVHFISALHGTNVGNLYPSIHKAYESSMFKVSTN-----RLTQIL 363

Query: 384 SQTVRY 389
              V  
Sbjct: 364 EDAVAA 369



 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN + K   A+V D+ G TRD    D         + DT GI E D
Sbjct: 7   VALIGRPNVGKSTIFNQMTKTRQALVADLSGLTRDRQYGDATYNNKSFVVIDTGGIGEAD 66

Query: 282 DIV---EKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSD 330
           D     +     ++   +  AD+I+ + +     I +  EI             +  K D
Sbjct: 67  DGRGGIDDYMSAQSHTAIHEADIIVFVVDARAGMIGADAEIGKMLHTLGKPVYLVANKID 126

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            ++     E+        + +++  G G+  L++ +   +    ++    
Sbjct: 127 GVHDAAPAEFYALGLGEPYPMTASHGRGIGNLLDDLTENMPEDVEEEDQG 176


>gi|197117132|ref|YP_002137559.1| GTP-binding protein EngA [Geobacter bemidjiensis Bem]
 gi|238690874|sp|B5EE25|DER_GEOBB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|197086492|gb|ACH37763.1| GTPase EngA [Geobacter bemidjiensis Bem]
          Length = 440

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 19/171 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L  +  A+V D+PG TRD    +++       + DT G   ET
Sbjct: 5   IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYAEVNRFDVPFILVDTGGFEPET 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPK--NIDFIFIGTKSDLY 332
            D + ++  +++   ++ ADLIL + +         +  +   +  N    +I  K D  
Sbjct: 65  SDRLLQQMREQSRFAMDEADLILFIMDARGGLTPADRDVVDMLRRINKPVFYIINKVDGE 124

Query: 333 STYTE---------EYDHLISSFTGEGLEELINK-IKSILSNKFKKLPFSI 373
               E         ++ H IS+    G+ +L+++ + +I  ++ K+L   I
Sbjct: 125 KQEAEAGDFYSLGVDHIHTISAEHNRGVGDLMDEVLAAIPYDREKELDEEI 175



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 112/308 (36%), Gaps = 30/308 (9%)

Query: 99  LAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSL 157
           L               ++  E  +  + EA+ +  ++ +   +      +  M   ++  
Sbjct: 54  LVDTGGFEPETSDRLLQQMREQSRFAMDEADLILFIMDARGGLTPADRDVVDMLRRINKP 113

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
               I+K+   +   EA   +S   D  +  S E    +  L +++ + I   +  E+  
Sbjct: 114 VFYIINKVDGEKQEAEAGDFYSLGVDHIHTISAEHNRGVGDLMDEVLAAIPYDREKELDE 173

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              +I ++G  N GKS+L N L   +  +     GTTRD +     +      + DTAGI
Sbjct: 174 EITRIAVVGRPNVGKSTLVNRLLGYERVVANPTAGTTRDAVDTRFTVNKKPYLLIDTAGI 233

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
           R        VEK  +      +E AD++L++                 ++      IF+ 
Sbjct: 234 RRKGKTVQKVEKYSVMDALRSIERADVVLIVLNAEEGVTEQDSKIAGYAYEAGRGCIFVV 293

Query: 327 TKSD-------LYSTYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKK 368
            K D         + +TEE               +S+ TG+   ++I ++  ++    K+
Sbjct: 294 NKWDTLAKDNSSIAKFTEEIRRNFKYLPFAPILFVSAETGQRTGKIIAEVDQVMEQYCKR 353

Query: 369 LPFSIPSH 376
           +     + 
Sbjct: 354 VTTGELNR 361


>gi|57233850|ref|YP_182104.1| GTP-binding protein EngA [Dehalococcoides ethenogenes 195]
 gi|57224298|gb|AAW39355.1| GTP-binding protein [Dehalococcoides ethenogenes 195]
          Length = 441

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 97/234 (41%), Gaps = 38/234 (16%)

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI-SSHISQGKLGEIIRNGYKIVILGHS 228
           +     L F E   +  F    + + +  +  ++    I+  +      N  K+ ++G +
Sbjct: 133 AAEFYSLGFGEPSVISAFHGSGISDLMDRVLEELPDQPIATPEE----DNSVKLALVGRT 188

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---E 285
           N GKS+L N    ++ +IV++IPGTTRD +   L+  G  V + DTAGIR    +    E
Sbjct: 189 NVGKSTLLNTFMGQERSIVSNIPGTTRDAIDTPLNFNGTNVLLIDTAGIRRRGKVESGVE 248

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-----------FIFIGTKSDL--- 331
           K  + R    V+ AD++LL+ +    +E+   ++              I I  K DL   
Sbjct: 249 KYSVLRALKAVDRADIVLLVMD---TEELVTAQDTHIAGYVRDTAKGIIIILNKWDLGKG 305

Query: 332 -------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                        +          +S  TG G++ +I     +   + K++P +
Sbjct: 306 QDKAEVTQTIQSRFKFLDYAPILFVSGKTGRGVDTIIPMALKVQEERNKRIPTA 359



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N LA K++AI  D+PGTTRD L   +      + + DT G+  + 
Sbjct: 8   IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFTTVSWLDRRLIMVDTGGLDPDL 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           + I+ ++   +  L ++ ADL+LL+ ++ +          +I        I +  K+D  
Sbjct: 68  ESIIGQQVNIQISLAIKEADLVLLVVDVKAGLITPDYEMADIIRRTGKPVILVANKADNL 127

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
               E  +           IS+F G G+ +L++++   L ++    P 
Sbjct: 128 KMGQEAAEFYSLGFGEPSVISAFHGSGISDLMDRVLEELPDQPIATPE 175


>gi|68171706|ref|ZP_00545063.1| Small GTP-binding protein domain:GTP-binding [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88657837|ref|YP_507319.1| GTP-binding protein EngA [Ehrlichia chaffeensis str. Arkansas]
 gi|67998875|gb|EAM85570.1| Small GTP-binding protein domain:GTP-binding [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88599294|gb|ABD44763.1| GTP-binding protein EngA [Ehrlichia chaffeensis str. Arkansas]
          Length = 442

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 13/175 (7%)

Query: 173 EADLDFSEEEDV--QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
              +D+    D     + S E    ++ L   +   I +  L  +  +  K+ I+G  NA
Sbjct: 125 CYSIDYLGYFDFIGPVYISAEHNLGLVDLYEALLPFIKEYDLNTLDLHNIKLSIVGRPNA 184

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE--- 287
           GKS+  N L  ++  IV+  PGTTRD + ++    G    + DTAG+R+   + E     
Sbjct: 185 GKSTFINRLLAENRMIVSPEPGTTRDSIDVEYTYRGQKFTLIDTAGMRKKAKVTESIEVT 244

Query: 288 GIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYST 334
            + +T   +  +D+++L+ +          S  E++  K    I    K D+ + 
Sbjct: 245 SVHKTIESINRSDIVILMIDSVYGIEQQDLSIAELAIQKGKAIIIALNKWDMIAK 299



 Score = 90.7 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 65/157 (41%), Gaps = 19/157 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS++FN L  +  AIV++IP  TRD    D DL G   KI DT G+  
Sbjct: 2   LKIAIVGLPNVGKSTIFNRLTSQKSAIVSNIPNLTRDRREGDADLCGLKFKIVDTGGVDN 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK------NIDFIFIGTK-- 328
           T  +     + +  L +E +D+I  + +       K I F K          I I  K  
Sbjct: 62  TIKLS-SLVLDQVKLSIEESDIIFFVVDARIEHDDKNIEFAKYLRKKVKKPIILIANKCE 120

Query: 329 -------SDLYSTYTEEYDHLISSFTGEGLEELINKI 358
                   D    +       IS+    GL +L   +
Sbjct: 121 SQKRCYSIDYLGYFDFIGPVYISAEHNLGLVDLYEAL 157


>gi|78066578|ref|YP_369347.1| GTP-binding protein EngA [Burkholderia sp. 383]
 gi|123728977|sp|Q39FR3|DER_BURS3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|77967323|gb|ABB08703.1| Small GTP-binding protein [Burkholderia sp. 383]
          Length = 445

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--AQQDISDQDAHIAGFVVEQGRALVIG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  +                  H IS+    G+  L+  +    +    KL
Sbjct: 297 VNKWDGLDEHARDRAKADLTRKLKFLDFAKSHYISAAKKTGIGALMRSVDDAYAAAMAKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                  D           IS+  G+G+ ++IN+   +      + 
Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDMINEALEVAYAGQPEE 170


>gi|170760623|ref|YP_001787836.1| GTP-binding protein EngA [Clostridium botulinum A3 str. Loch Maree]
 gi|238688523|sp|B1KX71|DER_CLOBM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169407612|gb|ACA56023.1| ribosome-associated GTPase EngA [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 439

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 29/258 (11%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  M  +        ++K+  ++    A   ++         S      +  + + +  +
Sbjct: 104 VAQMLRKSKKPVVLVVNKIDKLKDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEY 163

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
               +          I  +G  N GKSSL N L  ++  IV+DIPGTTRD +   +D E 
Sbjct: 164 FKDDESDGEDDERINIAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTEF 223

Query: 267 YLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFP 317
               + DTAG+R      + +E+  + RT+  +E AD+ +L+ +         +K I + 
Sbjct: 224 GEFTLIDTAGLRRKSKVKEEIERYSVIRTYASIERADVCILMIDAIEGISEQDQKIIGYA 283

Query: 318 KNID--FIFIGTKSDLYSTYTEEYDH------------------LISSFTGEGLEELINK 357
            +I+   + I  K DL     +  D                    IS+ TG+ + +++  
Sbjct: 284 HDINKAILVIVNKWDLVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQRVVKVLQT 343

Query: 358 IKSILSNKFKKLPFSIPS 375
            K    N  K++   + +
Sbjct: 344 AKECYDNYTKRVKTGVLN 361



 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K +AIV D PG TRD +  + +   Y   + DT GI  E+
Sbjct: 6   VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           +DI+  +  ++  + +E A++I+ L +       + +E++          + +  K D  
Sbjct: 66  EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADEEVAQMLRKSKKPVVLVVNKIDKL 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
                 Y+            SS    GL ++++++    
Sbjct: 126 KDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEYF 164


>gi|256827122|ref|YP_003151081.1| small GTP-binding protein domain/GTP-binding hypothetical protein
           [Cryptobacterium curtum DSM 15641]
 gi|256583265|gb|ACU94399.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Cryptobacterium curtum DSM 15641]
          Length = 444

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 16/152 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNG-----YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
            L + + + + +    E   N        + I+G  NAGKSSL N L++ D +IV+D+ G
Sbjct: 155 DLLDAVVAELDKVTPNETCENDDDDEIINVAIIGRPNAGKSSLTNMLSRNDRSIVSDVAG 214

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKE-- 307
           TTRD +   +  EG   ++ DTAG+R     D+ VE  G  R+   ++ AD++LL+ +  
Sbjct: 215 TTRDAIDTLVAHEGRAYRLVDTAGLRRKSKIDEDVEYYGFVRSMRAIDRADVVLLMVDGT 274

Query: 308 ---INSKKEI---SFPKNIDFIFIGTKSDLYS 333
               +  + I   +  +    + +  K D+  
Sbjct: 275 LGLTDQDQRIAGFAHERGCAMVIVLNKWDIVE 306



 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+  N +   D AIV  + G TRD    D D  G+   + DT GI   D
Sbjct: 6   VAVVGRPNVGKSTFVNRIVHSDEAIVHAMRGVTRDRSYHDADWNGHHFTLIDTGGIEMGD 65

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLY 332
            D  +     + F      D+ILLL +    I +  E    I   +    + +  K D  
Sbjct: 66  EDAFQTSIRNQAFTAARECDVILLLVDGRTGITADDEEVARILRREKAPVLVVVNKLDNL 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
            T    Y+            S+  G G  +L++ + + L
Sbjct: 126 DTADAMYEFYRLGLGDPWPISAIHGTGTGDLLDAVVAEL 164


>gi|312796097|ref|YP_004029019.1| GTP-binding protein [Burkholderia rhizoxinica HKI 454]
 gi|312167872|emb|CBW74875.1| GTP-binding protein [Burkholderia rhizoxinica HKI 454]
          Length = 444

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 31/183 (16%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + ID + +G    + DTAG+
Sbjct: 177 HGVKIAIVGRPNVGKSTLVNALLGEERVIAFDLPGTTRDSIYIDFERQGRPYTLIDTAGL 236

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI--------- 325
           R+   +    EK  + +T   + +A++++LL +  ++++IS        F+         
Sbjct: 237 RKRGKVFEAVEKFSVVKTLQSIADANVVILLLD--ARQDISEQDAHIAGFVVEQGRALVI 294

Query: 326 -GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKK 368
              K D    +  E                  H IS+    G+  L+  + +  +    K
Sbjct: 295 GVNKWDGLDEHVRERTKADLARKLKFLDFAKSHYISAAEKTGIGALLRSVDAAYAAAMAK 354

Query: 369 LPF 371
           LP 
Sbjct: 355 LPT 357



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 18/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +     + ++ +              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFVVDGRNGLAPQDKTIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                  D           IS+  G+G+ E+I +  ++          +   H
Sbjct: 125 KYSAVAADFYELGLGDPRAISAAHGDGVSEMIGQALAVAYADRAPHDEAHAGH 177


>gi|315282971|ref|ZP_07871260.1| GTP-binding protein EngA [Listeria marthii FSL S4-120]
 gi|313613383|gb|EFR87238.1| GTP-binding protein EngA [Listeria marthii FSL S4-120]
          Length = 191

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +   ++   +  + ++ AD+I+        + + + +  +I +  N   +    K D   
Sbjct: 66  EPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
              + YD           IS   G GL ++++ +++    + ++ 
Sbjct: 126 MRDQIYDFYALGFGEPYPISGSHGLGLGDMLDAVRAHFPKEEEEE 170


>gi|312131342|ref|YP_003998682.1| ribosome-associated gtpase enga [Leadbetterella byssophila DSM
           17132]
 gi|311907888|gb|ADQ18329.1| ribosome-associated GTPase EngA [Leadbetterella byssophila DSM
           17132]
          Length = 437

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 29/204 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +    H+S  K         +I ILG  NAGKSS  NAL  KD +IVTDI GTTRD 
Sbjct: 156 ELLDAFCEHLSDEKEEANEEGVPRIAILGRPNAGKSSFLNALLGKDRSIVTDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SK 311
           +     + G    ++DTAGIR+   +    E   + R+   ++ +D+ ++L +       
Sbjct: 216 IDTRYKMFGKDFILTDTAGIRKKAKVNEDLEFYSVLRSIKALDKSDVCIILLDATKGLES 275

Query: 312 KEISFPKNID-----FIFIGTKSDLYSTYTEEYD------------------HLISSFTG 348
           ++IS            + +  K D     ++  D                     S+   
Sbjct: 276 QDISIIAQAHNAKKGIVLMVNKWDALEKDSKTADTMKKEILERIAPMNYMPVIFASALNK 335

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           + + ++I     +  NK  ++P S
Sbjct: 336 QRIFQVIEAAMEVYENKTTQIPTS 359



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 20/175 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++ VAI  + PG TRD    +         + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIEERVAITDNQPGVTRDRHYGNAFWLKKHFTLIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DD  E+    +  L +E A +IL + +             ++          +  K++ +
Sbjct: 65  DDTFEEAIRSQVELAIEEATVILFVVDAKDGLTELDEEFADVLRRSKKPVFIVANKAETF 124

Query: 333 STYT-----------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                              + IS+  G G  EL++     LS++ ++        
Sbjct: 125 ERANLTASEFYGMGLNSEVYPISAIDGSGTGELLDAFCEHLSDEKEEANEEGVPR 179


>gi|322420694|ref|YP_004199917.1| GTP-binding protein Era [Geobacter sp. M18]
 gi|320127081|gb|ADW14641.1| GTP-binding protein Era [Geobacter sp. M18]
          Length = 297

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +I R+G+ + I+G  N GKS+L N +  + + I +D P TTR+ +    ++ G  +   D
Sbjct: 4   KIFRSGF-VSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNQIKGIHNVPGGQIVFLD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE--INSKKEISFPK------NIDFIFI 325
           T GI      + K  ++     V+  DLIL L +   + +KE    K      +   I +
Sbjct: 63  TPGIHRAKTRLNKFMVEEALSSVQGVDLILFLVDGAFDPEKEAEMIKEVLSGVDAPVILV 122

Query: 326 GTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL               TY  +    +S+ TG+G+++L+  +  +L       P  
Sbjct: 123 LNKIDLIPKGELLGRMAIYGETYPFKEIIPVSASTGDGVDQLVQLVHGLLPEGPCYFPDD 182

Query: 373 IPSHKRHLYHLSQTVR 388
           I +     + +++ +R
Sbjct: 183 ILTDVPERFIVAEIIR 198


>gi|237843971|ref|XP_002371283.1| GTP-binding protein EngA , putative [Toxoplasma gondii ME49]
 gi|211968947|gb|EEB04143.1| GTP-binding protein EngA , putative [Toxoplasma gondii ME49]
 gi|221483760|gb|EEE22072.1| hypothetical protein TGGT1_123310 [Toxoplasma gondii GT1]
          Length = 1146

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 13/143 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +S   L  + R    + I+G  N GKS L N L     ++V+   GTTRD +   +  +G
Sbjct: 857 LSSFALPTLAREDVNVAIVGRPNVGKSQLLNRLLGVSRSLVSPQAGTTRDAVDELVQRDG 916

Query: 267 YLVKISDTAGIR-----ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK 318
            L ++ DTAGIR     +    VE   +KR    +   D+ LL+ +      K++I   K
Sbjct: 917 RLYRLVDTAGIRRARVVKAQKGVEFVMVKRAERALARCDVCLLVCDAERGLVKQDILLAK 976

Query: 319 NID-----FIFIGTKSDLYSTYT 336
            I+      + +  K D      
Sbjct: 977 KIEEEGRAAVIVMNKWDTVDAEA 999



 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 29/170 (17%)

Query: 217 RNG--YKIVILGHSNAGKSSLFNALAKKD----VAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           R G    + +LG  N GKSSLFN L  K+     AIV D  GTTRD         G    
Sbjct: 645 REGRVPCVCLLGRPNVGKSSLFNTLKDKEDTAADAIVRDEDGTTRDRHYAFSVWRGRPFI 704

Query: 271 ISDTAGI-----RETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEI----SFP 317
           + DT G+     R    +  +E   +    +E A   + + +    ++ + E+       
Sbjct: 705 VVDTGGLIFEEDRYAAALYAEEIRTQVKCALEEATCAIFVVDGRHGLDGEDEVIAHFLRR 764

Query: 318 KNIDFIFIGTKSD-LYSTYTEEYDHL---------ISSFTGEGLEELINK 357
                +    K++ + S      D            S+  G GL +L++ 
Sbjct: 765 SKTPVVVCVNKTENVRSGIASAQDFWKLGLGQPFPCSAVEGVGLPDLLDA 814


>gi|167754612|ref|ZP_02426739.1| hypothetical protein CLORAM_00114 [Clostridium ramosum DSM 1402]
 gi|237733753|ref|ZP_04564234.1| GTP-binding protein engA [Mollicutes bacterium D7]
 gi|167705444|gb|EDS20023.1| hypothetical protein CLORAM_00114 [Clostridium ramosum DSM 1402]
 gi|229383091|gb|EEO33182.1| GTP-binding protein engA [Coprobacillus sp. D7]
          Length = 434

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 29/185 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +  I+G  N GKSSL NA+  ++  IV++I GTTRD +      +G   ++ DTAG+R+
Sbjct: 174 IRFSIIGRPNVGKSSLTNAILGEERVIVSNIEGTTRDAIDTAFVKDGQKYRVIDTAGMRK 233

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              +    EK  I R    +E +D+I+++ + N             +       I +  K
Sbjct: 234 KGKVYENIEKYSILRALSSIEKSDVIVVVIDGNQGVIEQDKHVAGYAHEAGKGVILVVNK 293

Query: 329 SDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL     +                       +S+ T + +++L   I+    N  K++ 
Sbjct: 294 WDLVEKDEKTMQKKEKELRSQFKYLDYARIIFLSAKTHQRVQQLFPLIQESFENSHKRVQ 353

Query: 371 FSIPS 375
            S+ +
Sbjct: 354 TSVLN 358



 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 21/156 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G +N GKS++FN +  + ++IV D+ G TRD +           ++ DT GI   D
Sbjct: 5   VAIVGRANVGKSTIFNRIVGERISIVEDVAGVTRDRIYATATWLTKEFRLIDTGGIELQD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI----------DFIFIGTKSDL 331
                +   +  + +E ADLI+ +  +N ++ I+                 +    K D 
Sbjct: 65  ASFTAQIKMQAEIAIEEADLIVFV--VNGREGITREDEYVARLLQKTSKPVLLAVNKIDD 122

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKI 358
            +   + Y+            S   G G+ +L+++I
Sbjct: 123 NAFKDDIYEFYNLGIGDPIAVSGSHGIGIGDLLDEI 158


>gi|118594978|ref|ZP_01552325.1| GTP-binding protein EngA [Methylophilales bacterium HTCC2181]
 gi|118440756|gb|EAV47383.1| GTP-binding protein EngA [Methylophilales bacterium HTCC2181]
          Length = 474

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 34/249 (13%)

Query: 129 ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS 188
           + +AD+I  + + ++ L +    G    + G                 DF         S
Sbjct: 100 QHIADVIR-KNDKEKILLINKTEGMQHEIVGA----------------DFYSLGFKNILS 142

Query: 189 SKEVLNDILFLKNDISSHIS--QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                 + + L  ++   ++    +   I +   KI I+G  N GKS+L NAL  ++  I
Sbjct: 143 ISSAHGEGVGLLKELLVDLNHQDSEPQSIFKGAPKITIVGRPNVGKSTLVNALVGEERFI 202

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           V D  GTTRD +++D D  G    ++DTAGIR+   +    EK  + +T   VE++D+I+
Sbjct: 203 VFDQAGTTRDAVSVDFDFNGDRFVLTDTAGIRKKGKVFETVEKFSVLKTLAAVESSDVII 262

Query: 304 LLKEIN---SKKEI-----SFPKNIDFIFIGTKSDLYSTYTEEYDHLISS----FTGEGL 351
           L+ + +   + +++             +    K D  S Y  E           F     
Sbjct: 263 LVIDSSGGIATQDMHLIGFILETGKSIVIAINKWDSVSAYEREAIKNDIDLKLPFVNFAE 322

Query: 352 EELINKIKS 360
           +  I+ +K 
Sbjct: 323 KVFISALKE 331



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 18/170 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N GKSSLFN L K   A+V D+PG TRD     + +E     + DT G   
Sbjct: 2   ISVAIVGRPNVGKSSLFNRLTKSRDALVADLPGLTRDRHYGKITIEDAQFILVDTGGFEP 61

Query: 280 TDDI-VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
              I + K+   +T L ++  D+IL + +             ++    + + I +  K++
Sbjct: 62  KKKIGIAKKMALQTLLAIDECDVILFVVDGREGLHPIDQHIADVIRKNDKEKILLINKTE 121

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                    D           ISS  GEG+  L   +  +     +    
Sbjct: 122 GMQHEIVGADFYSLGFKNILSISSAHGEGVGLLKELLVDLNHQDSEPQSI 171


>gi|163842662|ref|YP_001627066.1| GTP-binding protein EngA [Brucella suis ATCC 23445]
 gi|189037139|sp|B0CK66|DER_BRUSI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|163673385|gb|ABY37496.1| small GTP-binding protein domain [Brucella suis ATCC 23445]
          Length = 483

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 32/221 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQLIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           E  +D +E     +T   +  AD +L + +  +          E         + +  K+
Sbjct: 62  EAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKA 121

Query: 330 DLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +   +    YD           IS+  G+G+ +L + I  +L          + + +R  
Sbjct: 122 EARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL------GEERVFAEERQE 175

Query: 381 YHLSQTVRYLEMASL----NEKDCGLDIIAEN----LRLAS 413
               +      + +L     E     +I A +    LR+A 
Sbjct: 176 EAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAI 216



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 32/263 (12%)

Query: 93  NGILEELAKMPNLRLANPG--EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM 150
           + +L  +     +  A+    E  RR+ +   +   +AE+        +E     + +  
Sbjct: 84  DAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKAEARG------SEAGMYDAFQLG 137

Query: 151 SGELSSLYGQ-------WIDKLTHIRSF--IEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
            GE   +  +         D +  +     + A+    E  D     +         +++
Sbjct: 138 LGEPCPISAEHGQGMPDLRDAIVELLGEERVFAEERQEEAADEVFTPAAVGALVGDDIED 197

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
             +  I      + +R    I I+G  NAGKS+L N +  +D  +     G TRD ++ D
Sbjct: 198 PDAEEIPAYDATKPLR----IAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISAD 253

Query: 262 LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE----- 313
            +  G  +K+ DTAG+R    +    EK  +      +  A++++++ +     E     
Sbjct: 254 WEWHGRKIKLFDTAGMRRKARVQEKLEKLSVADGLRAIRFAEVVIIVLDATIPFEKQDLQ 313

Query: 314 ---ISFPKNIDFIFIGTKSDLYS 333
              +   +    +    K DL  
Sbjct: 314 IADLIIREGRAPVIAFNKWDLIE 336


>gi|296158988|ref|ZP_06841816.1| ribosome-associated GTPase EngA [Burkholderia sp. Ch1-1]
 gi|295890863|gb|EFG70653.1| ribosome-associated GTPase EngA [Burkholderia sp. Ch1-1]
          Length = 445

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 31/187 (16%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E    G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + D
Sbjct: 174 EKAARGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLID 233

Query: 274 TAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI----- 325
           TAG+R      + +EK  + +T   + +A++++LL +  ++++IS        F+     
Sbjct: 234 TAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLD--ARQDISEQDAHIAGFVVEQGR 291

Query: 326 -----GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSN 364
                  K D    +  E                  H IS+    G+  L+  +    + 
Sbjct: 292 ALVVGVNKWDGLDPHVRERTKADLERKLKFLDFAKFHFISAAEKTGIGPLMRSVDDAYAA 351

Query: 365 KFKKLPF 371
              KLP 
Sbjct: 352 AMAKLPT 358



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE +D+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKVGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              T   D           IS+  G+G+ E+IN+   +      +    
Sbjct: 125 KYSTVAADFYELGLGDPRAISAAHGDGVTEMINEALEVAYAGQPEENDD 173


>gi|163867849|ref|YP_001609053.1| GTP-binding protein EngA [Bartonella tribocorum CIP 105476]
 gi|189037137|sp|A9IQH4|DER_BART1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|161017500|emb|CAK01058.1| GTP-binding protein [Bartonella tribocorum CIP 105476]
          Length = 474

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS+LFN L  + +A+V D PG TRD       L+     + DTAG+ E
Sbjct: 3   LTIAIVGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRRIHAAKLQDLRFDVIDTAGLEE 62

Query: 280 TDD-IVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             D  +E     +T   ++ ADLIL + +  S           +        + +  KS+
Sbjct: 63  AGDHTLEGRMRSQTKAAIDEADLILFVFDAKSGITPSDLNFASLVRKSGKPIVLVANKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             +    EY+           IS+  G GL +L + I   +
Sbjct: 123 SKAATGGEYEAWSLGLGEPCPISAEHGLGLSDLRDAIIDAV 163



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 21/188 (11%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
                D +        A   FS  ++      +++      + +DI     +G + +  +
Sbjct: 152 LSDLRDAIIDAVGSERA---FSNNKE------EDMTIQPASVGDDIEDLQEEGLIYDESK 202

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              +I I G  N GKS+L N++ K+D  +     G TRD +++D +  G  +K+ DTAG+
Sbjct: 203 -PIRIAIAGRPNTGKSTLINSMLKQDRLLTGPEAGLTRDSISVDWEWRGRHIKLFDTAGL 261

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIG 326
           R    I    EK  +  T   +  A++++++ +     E        +   +    +   
Sbjct: 262 RRKSKIQEKLEKLSVADTLRAIRFAEVVVIVFDATMPFEKQDLQIADLVIREGRVPVIAF 321

Query: 327 TKSDLYST 334
            K DL   
Sbjct: 322 NKWDLIEN 329


>gi|134295839|ref|YP_001119574.1| GTP-binding protein EngA [Burkholderia vietnamiensis G4]
 gi|166224317|sp|A4JEN6|DER_BURVG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|134138996|gb|ABO54739.1| small GTP-binding protein [Burkholderia vietnamiensis G4]
          Length = 445

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--AQQDISDQDAHIAGFVVEQGRALVIG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  +                  H IS+    G+  L+  +    +    KL
Sbjct: 297 VNKWDGLDDHARDRAKADLTRKLKFLDFAKSHYISAAKKTGIGALMRSVDDAYAAAMAKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                  D           IS+  G+G+ ++IN+   +      + 
Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDMINEALEVAYAGQPEE 170


>gi|172060768|ref|YP_001808420.1| GTP-binding protein EngA [Burkholderia ambifaria MC40-6]
 gi|238689149|sp|B1YR40|DER_BURA4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|171993285|gb|ACB64204.1| small GTP-binding protein [Burkholderia ambifaria MC40-6]
          Length = 445

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--AQQDISDQDAHIAGFVVEQGRALVIG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  +                  H IS+    G+  L+  +    +    KL
Sbjct: 297 VNKWDGLDDHARDRAKADLTRKLKFLDFAKSHYISAAKKTGIGALMRSVDDAYAAAMAKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  +  ++T   VE AD+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHQMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                  D           IS+  G+G+ ++IN+   +      + 
Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDMINEALEVAYAGQPEE 170


>gi|118580147|ref|YP_901397.1| GTP-binding protein EngA [Pelobacter propionicus DSM 2379]
 gi|171704446|sp|A1APR9|DER_PELPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|118502857|gb|ABK99339.1| small GTP-binding protein [Pelobacter propionicus DSM 2379]
          Length = 448

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 14/142 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+LFN L     AIV D PG TRD     ++       + DT G    T
Sbjct: 5   VALVGRPNVGKSTLFNRLLGHRRAIVDDTPGVTRDRNYALINRFEKPFILIDTGGFEPVT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTKSDLY 332
           +D + ++  +++ L +E AD+I+ + +  S     ++             +++  K D  
Sbjct: 65  EDRLLQQMREQSSLAMEEADVIIFMMDARSGLTPADVEVANMLRRVKKPVMYVVNKVD-- 122

Query: 333 STYTEEYDHLISSFTGEGLEEL 354
               E+ ++  + F   G+E L
Sbjct: 123 ---GEKLENDSAEFYSLGVENL 141



 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 11/125 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           +I ++G  N GKSSL N L   +  +     GTTRD +            + DTAGIR  
Sbjct: 177 RIAVVGRPNVGKSSLVNRLLGFERVVANPTAGTTRDSVDTLFMCNKKPYLLIDTAGIRRK 236

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKS 329
            +T + +EK  +      +E AD++L++ +         + I+          +F+  K 
Sbjct: 237 GKTTEKLEKYSVVDALRSIERADVVLVVLDATQGVTEQDERIAGYVHEAGRACVFVLNKW 296

Query: 330 DLYST 334
           D    
Sbjct: 297 DAIEK 301


>gi|113954294|ref|YP_729814.1| GTP-binding protein EngA [Synechococcus sp. CC9311]
 gi|123031842|sp|Q0ICK8|DER_SYNS3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|113881645|gb|ABI46603.1| GTP-binding protein EngA [Synechococcus sp. CC9311]
          Length = 455

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 11/149 (7%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L + + + +             ++ I+G  N GKSSL N++  +  AIV+ I GTTRD
Sbjct: 155 AELLDQVLTFLPPKDEESDEEEPIQLSIIGRPNVGKSSLLNSICGETRAIVSPIRGTTRD 214

Query: 257 VLTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI----- 308
            +   ++ E    ++ DTAGI   R  +   E  GI R+F  +E +D+ +L+ +      
Sbjct: 215 TIDTRIERENRRWRLIDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVT 274

Query: 309 --NSKKEISFPKNIDFI-FIGTKSDLYST 334
             + +      ++      +  K D    
Sbjct: 275 EQDQRLAGRIEEDGRACVVVVNKWDAVEK 303



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           D     E  ++  L +  A + L++ +          S  E    +N   +    K +  
Sbjct: 66  DSEFLPEIREQASLALAEASVALVIVDGQQGLTAADESIAEWLRTQNCKTLLAVNKCESP 125

Query: 333 ST----------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                             H IS+  G G  EL++++ + L  K ++   
Sbjct: 126 EQGLGMAAEFWRLGLGEPHPISAIHGAGTAELLDQVLTFLPPKDEESDE 174


>gi|295398578|ref|ZP_06808610.1| ribosome-associated GTPase EngA [Aerococcus viridans ATCC 11563]
 gi|294973179|gb|EFG48974.1| ribosome-associated GTPase EngA [Aerococcus viridans ATCC 11563]
          Length = 436

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 19/165 (11%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +  ++          +   +     ++G  N GKSSL NA+  ++  IV+++ GTTRD 
Sbjct: 154 DILEEVFHLAPDDIENDDDDDTISFALIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +    + +G + KI DTAGIR+   +    EK  + R    +E A + L++  +N+++ I
Sbjct: 214 IDTSFEDDGQVYKIIDTAGIRKRGKVYEATEKYSVMRAMRAIERAQVCLVV--LNAEEGI 271

Query: 315 ----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
                     +       I +  K D      E+ +H +  FT +
Sbjct: 272 RDQDKTIAGYAHEAGRGIIIVVNKWD----TLEKDNHTMKKFTDD 312



 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 17/156 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS++FN +    ++IV D PG TRD +    +  G  + + DT GI  
Sbjct: 4   LTIAIVGRPNVGKSTIFNRVVGDRISIVQDEPGVTRDRIYAQGEWLGKQLNVIDTGGIEF 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIG--TKSDL 331
            D     +   +  + +E AD+I+++  +         +  S  +  D   +    K D 
Sbjct: 64  NDQDFMTQIRLQAEIAMEEADVIIMMTNVREGVTKTDSQIASMLRKTDKPVVLAVNKVDN 123

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKI 358
                E YD           IS   G G+ +++ ++
Sbjct: 124 PEQRAEIYDFYSLGLGDPYPISGSHGLGIGDILEEV 159


>gi|255521525|ref|ZP_05388762.1| GTP-binding protein EngA [Listeria monocytogenes FSL J1-175]
          Length = 259

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV D+PG TRD +    +  G    I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +   ++   +  + ++ AD+I+        + + + +  +I +  N   +    K D   
Sbjct: 66  EPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
              + YD           IS   G GL ++++ +++    + ++ 
Sbjct: 126 MRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAVRAHFPKEEEEE 170



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 18/184 (9%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  + +A+     I   +     L++  +         +  D++     +    L F 
Sbjct: 91  NGREGVTDADEQVAKILYRSNKPIVLAINKVDNP------EMRDQI-----YDFYSLGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   S    L D+L   + + +H  + +  E   +  K  ++G  N GKSS+ NAL
Sbjct: 140 EPYPISG-SHGLGLGDML---DAVRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNAL 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             +D  IV+DI GTTRD +      +G    + DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAI 255

Query: 297 ENAD 300
           E +D
Sbjct: 256 ERSD 259


>gi|115351797|ref|YP_773636.1| GTP-binding protein EngA [Burkholderia ambifaria AMMD]
 gi|170702835|ref|ZP_02893684.1| small GTP-binding protein [Burkholderia ambifaria IOP40-10]
 gi|171321331|ref|ZP_02910290.1| small GTP-binding protein [Burkholderia ambifaria MEX-5]
 gi|122323095|sp|Q0BEX1|DER_BURCM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|115281785|gb|ABI87302.1| small GTP-binding protein [Burkholderia ambifaria AMMD]
 gi|170132253|gb|EDT00732.1| small GTP-binding protein [Burkholderia ambifaria IOP40-10]
 gi|171093388|gb|EDT38576.1| small GTP-binding protein [Burkholderia ambifaria MEX-5]
          Length = 445

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--AQQDISDQDAHIAGFVVEQGRALVIG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  +                  H IS+    G+  L+  +    +    KL
Sbjct: 297 VNKWDGLDDHARDRAKADLTRKLKFLDFAKSHYISAAKKTGIGALMRSVDDAYAAAMAKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  +  ++T   VE AD+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHQMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                  D           IS+  G+G+ ++IN+   +      + 
Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDMINEALEVAYAGQPEE 170


>gi|223933730|ref|ZP_03625704.1| small GTP-binding protein [Streptococcus suis 89/1591]
 gi|302024351|ref|ZP_07249562.1| GTP-binding protein EngA [Streptococcus suis 05HAS68]
 gi|330833346|ref|YP_004402171.1| GTP-binding protein EngA [Streptococcus suis ST3]
 gi|223897611|gb|EEF63998.1| small GTP-binding protein [Streptococcus suis 89/1591]
 gi|329307569|gb|AEB81985.1| GTP-binding protein EngA [Streptococcus suis ST3]
          Length = 436

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      +    E    I +  N   I +  K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGVTDADEYVSRILYKTNKPVILVVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  +  +    I 
Sbjct: 126 MRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIIENLPVQEAEENPDII 175



 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + I    + E   N    K  ++G  N GKSSL NA+  ++  I + + GTTRD +  
Sbjct: 156 LDAIIENLPVQEAEENPDIIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
              D EG    + DTAG+R++  +    EK  + R    +E +D+IL++  IN+++ I  
Sbjct: 216 HFTDPEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIERSDVILMV--INAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       I +  K D                       +      +S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKKWEDDIRDQFQYLSYAPIIFVSALTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L   IK+I  ++  ++P ++ +
Sbjct: 334 QRLHKLPEMIKAISESQNTRIPSAVLN 360


>gi|163749553|ref|ZP_02156800.1| GTP-binding protein EngA [Shewanella benthica KT99]
 gi|161330663|gb|EDQ01600.1| GTP-binding protein EngA [Shewanella benthica KT99]
          Length = 492

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            K+ I+G  N GKS+L N +  ++  +V D PGTTRD + I +  EG    + DTAG+R 
Sbjct: 200 IKLAIIGKPNVGKSTLINRILGEERVVVYDSPGTTRDSIYIPMVREGREYVLIDTAGVRR 259

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTK 328
             + ++ VEK  + +T   VE+ +++LL+ +     +++++     +       +    K
Sbjct: 260 RSKVNETVEKFSVIKTLKAVEDCNVVLLIIDAREGITEQDLGLLGFALNAGRALVIAVNK 319

Query: 329 SD-----LYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D     +      E D           H IS+  G G+  L   ++    +  +++  S
Sbjct: 320 WDGIDQEIKDRVKSELDRRLGFIDFARIHFISALHGTGVGHLYESVEEAYDSATRRVSTS 379

Query: 373 IPSH 376
           + + 
Sbjct: 380 MLTR 383



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD       L GY   + DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRASLSGYEFIVVDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
           + +E    +++   +E AD++L L +  +          E    ++     +  K D
Sbjct: 65  EGIEVHMAQQSLAAIEEADVVLFLTDARAGLTAADHAIAEHLRRRDKTTFVVANKID 121


>gi|116618390|ref|YP_818761.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122271410|sp|Q03WN4|DER_LEUMM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|116097237|gb|ABJ62388.1| Predicted GTPase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 436

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 31/205 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++I  H    +  E   +  +  I+G  N GKSS+ NA+  +   IV+DI GTTRD 
Sbjct: 154 DLLDEIVKHFPD-EAAEQEDDAIRFSIIGRPNVGKSSIVNAMLGEKRVIVSDIEGTTRDA 212

Query: 258 LTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK-- 311
           +    +  EG    + DTAG+R+   I    EK  + R    ++++++IL++ +  +   
Sbjct: 213 IDTRFVTEEGDEFVMVDTAGMRKRGKIYENTEKYSVMRAMKAIDDSNVILMVIDAEAGIR 272

Query: 312 ------KEISFPKNIDFIFIGTKSDLYST-----------YTEEYDH-------LISSFT 347
                    +       I +  K D                 EE+          +S+ T
Sbjct: 273 EQDKHVAGFAHEAGRAMIIVVNKWDAIEKNDRTMSDFENLIREEFKFLDYAPIVFVSAKT 332

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
           G+ L+ L   +K +  N  K++  S
Sbjct: 333 GQRLDRLPQMVKDVDDNHRKRITSS 357



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + +AIV D+PG TRD L    +   Y  ++ DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRMAGERIAIVEDMPGVTRDRLYAPAEWLNYEFRMIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
                E   +  L +  AD+I+++                + +  +   +    K D   
Sbjct: 66  APFLAEIRGQVELAINEADVIVMVVSGREGLTEADEVVARMLYKSDKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +S   G GL +L+++I     ++  +      
Sbjct: 126 MRHDVYDFYALGLGDPFPVSGSHGLGLGDLLDEIVKHFPDEAAEQEDDAI 175


>gi|77919007|ref|YP_356822.1| GTP-binding protein EngA [Pelobacter carbinolicus DSM 2380]
 gi|123574290|sp|Q3A4Q5|DER_PELCD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|77545090|gb|ABA88652.1| putative Era-like GTP-binding protein [Pelobacter carbinolicus DSM
           2380]
          Length = 439

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 18/151 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +     AIV D PG TRD     +   G    + DT G     
Sbjct: 4   VAIVGRPNVGKSTLFNRILGTRRAIVEDYPGVTRDRNYAQVTRYGTPFVLIDTGGFEPAS 63

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
            + + K+  +++ L VE AD+IL + +         +    +        +++  K D  
Sbjct: 64  QNRLLKQMREQSELAVEEADVILFVVDAKEGLTPSDDEVAGMLRRSGKPVLYVVNKVDGD 123

Query: 333 STYTEEYDHL---------ISSFTGEGLEEL 354
           S      +           +S+  G G+++L
Sbjct: 124 SHEAAASEFYALGVDQLYTVSAEHGRGMDDL 154



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 83/195 (42%), Gaps = 29/195 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N +   +  +     GTTRD +            + DTAGIR  
Sbjct: 177 RLAVIGRPNVGKSSLINRMIGVERLVANPTAGTTRDSIDTPFVYNKKSYVLIDTAGIRRK 236

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTKS 329
             +    EK  + ++   +E A ++L++ +     +++++     +  +    + +  K 
Sbjct: 237 GRVQQKLEKYSVIQSLKAMERAHVVLVVIDAEEGVTEQDLTVAGYALERGRAVLLVVNKW 296

Query: 330 DLYST-------YTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
           DL +        YTE+  H            +S+ +G+ + +++ +++ +     +++P 
Sbjct: 297 DLVTKDHGTMKQYTEKVRHAFKFLPFAPIIFVSALSGQRVSKIMAEVEKVAIEFNRQVPT 356

Query: 372 SIPSHKRHLYHLSQT 386
            + +       LS  
Sbjct: 357 GVLNRVLEEAVLSHA 371


>gi|15894988|ref|NP_348337.1| GTP-binding protein EngA [Clostridium acetobutylicum ATCC 824]
 gi|26006729|sp|Q97ID7|DER_CLOAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|15024676|gb|AAK79677.1|AE007680_10 Predicted GTPase [Clostridium acetobutylicum ATCC 824]
 gi|325509125|gb|ADZ20761.1| GTP-binding protein EngA [Clostridium acetobutylicum EA 2018]
          Length = 438

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++ +        E      KI  +G  N GKSSL N +  ++  IV+DIPGTTRD 
Sbjct: 155 DMLDEVVNKFKSEGEDEEEEEYIKIAFVGKPNVGKSSLTNRILGEERVIVSDIPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   L+ +   + + DTAG+R    I   +E+    RT   +E  D+  L+ +       
Sbjct: 215 IDSFLETDFGKLVLIDTAGLRRKSRIKEEIERYSAVRTMAAIERCDVCTLILDATEPISE 274

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDH------------------LISSFTG 348
                   +   N   + I  K DL     +  ++                   IS+ TG
Sbjct: 275 QDERIIGYAHENNKAILVIVNKWDLIEKDDKTMENFKKNLEMKFSFMAYAPFLFISAKTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + + +++++IK    N  K++   + +
Sbjct: 335 QRVHKVLSEIKKCYDNYSKRIATGVLN 361



 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA K V+IV D PG TRD +  + +  G    I DT GI  E 
Sbjct: 6   VTIVGRPNVGKSTLFNKLAGKRVSIVEDTPGVTRDRIYAESEWVGKKFTIIDTGGIEPEN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           +DI+  +  ++  + +E +D+I+ + +         N    +        + +  K D  
Sbjct: 66  NDIILTQMRRQAQIAIEMSDVIIFMVDGKQGLTDTDNEVAIMLRKSKKPIVLVVNKIDKN 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
                 Y+            SS  G G+ ++++++ +  
Sbjct: 126 VEENNIYEFYNLGIGDPVSISSSQGLGIGDMLDEVVNKF 164


>gi|297568834|ref|YP_003690178.1| ribosome-associated GTPase EngA [Desulfurivibrio alkaliphilus AHT2]
 gi|296924749|gb|ADH85559.1| ribosome-associated GTPase EngA [Desulfurivibrio alkaliphilus AHT2]
          Length = 487

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 62/339 (18%), Positives = 118/339 (34%), Gaps = 60/339 (17%)

Query: 106 RLANPGEFSRRAFE---NGKIDLLEAESLADLISSETEMQRRLS------MEGMSGEL-- 154
           R      ++ R F     G ++      +  LI  +T      +      ++G  G L  
Sbjct: 87  RHYEKITWNDRRFILVDTGGLESDTTTEINRLIQEQTSQAVAEADVVLFLLDGREGILPD 146

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEE------------DVQNFSSKEVLNDILFLKND 202
                + + +      ++   +D  E+             +     S E    I  L + 
Sbjct: 147 DQEVVEILRRSGKKVFYLINKIDAPEQAAKLLPTFYELGVEELWPVSAEHGQGIGDLLDR 206

Query: 203 ISSHISQGKL-GEII--RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           +++ +   +  GE +   +   +  +G  N GKSSL N L  ++  +V+++PGTTRD + 
Sbjct: 207 VAAELPPAQEPGEEVSAEDTVGVAFIGRPNVGKSSLINRLLGEERMVVSNLPGTTRDSVD 266

Query: 260 IDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI-------- 308
             L        + DTAGIR    +    EK  + R    +E  DL L++ +         
Sbjct: 267 TLLTRADKKYLLIDTAGIRRKGKVHEKVEKFSVLRALRTLERCDLALIVIDALEGVTEQD 326

Query: 309 NSKKEISFPKNIDFIFIGTKSDLYSTYTEE------------------YDHLISSFTGEG 350
                    +    + +  K DL     ++                    H +S+ TG G
Sbjct: 327 TKVLGYGLERGRACLVLLNKWDLIEHDRKQQQRLLEDVKRAVHFAGYAPVHRVSALTGHG 386

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           L +L   I  +     +K   ++ +       L + V+ 
Sbjct: 387 LGKLFPLIDKVAEQYRRKFTTAVLNR-----ILEEAVQA 420



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + ++G  N GKSSLFN LA    AIV   PG TRD     +        + DT G+  +T
Sbjct: 52  VALVGRPNVGKSSLFNRLAGSRKAIVDPTPGVTRDRHYEKITWNDRRFILVDTGGLESDT 111

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
              + +   ++T   V  AD++L L +             EI         ++  K D  
Sbjct: 112 TTEINRLIQEQTSQAVAEADVVLFLLDGREGILPDDQEVVEILRRSGKKVFYLINKIDAP 171

Query: 333 STYTE----------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               +          E    +S+  G+G+ +L++++ + L    +     
Sbjct: 172 EQAAKLLPTFYELGVEELWPVSAEHGQGIGDLLDRVAAELPPAQEPGEEV 221


>gi|188586247|ref|YP_001917792.1| small GTP-binding protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|226741142|sp|B2A4M9|DER_NATTJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|179350934|gb|ACB85204.1| small GTP-binding protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 440

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 13/162 (8%)

Query: 198 FLKNDISSHISQGKLGEI--IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L ++I   + + +  E+    +   + ++G  N GKSSL N +  K+  IV+++PGTTR
Sbjct: 154 QLLDEIVELLPEQEYEELNYHEDDIMLSVIGRPNVGKSSLINKILNKERLIVSNMPGTTR 213

Query: 256 DVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK- 311
           D +   ++ E       DTAG+R+    D+ +EK  + R+   +E +++ LLL ++    
Sbjct: 214 DAIDTVIEREDQKYVFIDTAGLRKKSKIDERLEKYSVIRSIKGMERSNIALLLIDVTKGI 273

Query: 312 -------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
                    ++  K    I +  K D      +  D    + 
Sbjct: 274 LEQDKKIAGLAEEKGKGLIILLNKWDAIEKDGKAGDKYYETV 315



 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 75/160 (46%), Gaps = 16/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN +  + ++IV D PG TRD +    +  G+   + DT GI + +
Sbjct: 7   VALVGRPNVGKSALFNRIVGQRISIVDDTPGVTRDRIDGKGEWSGHSFNLIDTGGIFDEE 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-------INSKKEISFPKNIDFIFIG-TKSD--- 330
           D + K+ + +  + ++ AD+I+ + +        + +   +  K    + +   KS+   
Sbjct: 67  DDILKQVVIQAEVAIDEADVIVFVTDGRDGITPADEEVAATLRKTKKPVLVAVNKSEGNY 126

Query: 331 -----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                 +     E    IS+  G    +L+++I  +L  +
Sbjct: 127 DQYAMEFYQLGFEQVISISALHGTNTGQLLDEIVELLPEQ 166


>gi|261379855|ref|ZP_05984428.1| ribosome-associated GTPase EngA [Neisseria subflava NJ9703]
 gi|284797551|gb|EFC52898.1| ribosome-associated GTPase EngA [Neisseria subflava NJ9703]
          Length = 485

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  DI     + +  E         ++G  N GKS+L NA+  ++  I  D+ GTTRD +
Sbjct: 155 LIEDILETFPEPEKEEEEAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                          +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFVLEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L   I++  +    K+P    + 
Sbjct: 335 DGLFESIQAAYNAAMIKMPTPKITR 359



 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                +  +        ++IS   G+G+  LI  I    
Sbjct: 125 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETF 163


>gi|260583467|ref|ZP_05851215.1| ribosome-associated GTPase EngA [Granulicatella elegans ATCC
           700633]
 gi|260158093|gb|EEW93161.1| ribosome-associated GTPase EngA [Granulicatella elegans ATCC
           700633]
          Length = 437

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 17/172 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + ++IV DI G TRD +  + +  G+   I DT GI  TD
Sbjct: 6   IAIVGRPNVGKSTIFNRVVGERISIVEDIAGVTRDRIYSEGEWLGHQFHIIDTGGIDITD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTKSDLYS 333
           +        +  + +E AD+I+ L  +     ++ + I+   +  N   +    K D   
Sbjct: 66  EPFMSNIRMQAEIAMEEADVIIFLTSVKEGVTSTDEHIAKMLYRTNKPVLLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             ++ +D           IS   G GL +L++           +   +    
Sbjct: 126 LRSDIFDFYALGFGEPFPISGSHGLGLGDLLDAAVKAFPEHDDQEDDTDVIR 177



 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 16/147 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +       +    E   +  +   +G  N GKSSL NA+  ++  IV+++ GTTRD 
Sbjct: 154 DLLDAAVKAFPEHDDQEDDTDVIRFSFIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA 213

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG + K+ DTAGIR+   +    EK  + R    +E +D++ ++  +N+++ 
Sbjct: 214 IDTSFTDEEGTIFKMIDTAGIRKKGRVFESTEKYSVLRALRAIERSDIVCVV--LNAEEG 271

Query: 314 I----------SFPKNIDFIFIGTKSD 330
           I          +       I +  K D
Sbjct: 272 IQEQDKKIAGYAHEAGKGVIILVNKWD 298


>gi|221504233|gb|EEE29908.1| GTPase mss1/trme, putative [Toxoplasma gondii VEG]
          Length = 1151

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 13/143 (9%)

Query: 207  ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +S   L  + R    + I+G  N GKS L N L     ++V+   GTTRD +   +  +G
Sbjct: 862  LSSFALPTLAREDVNVAIVGRPNVGKSQLLNRLLGVSRSLVSPQAGTTRDAVDELVQRDG 921

Query: 267  YLVKISDTAGIR-----ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK 318
             L ++ DTAGIR     +    VE   +KR    +   D+ LL+ +      K++I   K
Sbjct: 922  RLYRLVDTAGIRRARVVKAQKGVEFVMVKRAERALARCDVCLLVCDAERGLVKQDILLAK 981

Query: 319  NID-----FIFIGTKSDLYSTYT 336
             I+      + +  K D      
Sbjct: 982  KIEEEGRAAVIVMNKWDTVDAEA 1004



 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 29/170 (17%)

Query: 217 RNG--YKIVILGHSNAGKSSLFNALAKKD----VAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           R G    + +LG  N GKSSLFN L  K+     AIV D  GTTRD         G    
Sbjct: 645 REGRVPCVCLLGRPNVGKSSLFNTLKDKEDAAADAIVRDEDGTTRDRHYAFSVWRGRPFI 704

Query: 271 ISDTAGI-----RETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEI----SFP 317
           + DT G+     R    +  +E   +    +E A   + + +    ++ + E+       
Sbjct: 705 VVDTGGLIFEEDRYAAALYAEEIRTQVKCALEEATCAIFVVDGRHGLDGEDEVIAHFLRR 764

Query: 318 KNIDFIFIGTKSD-LYSTYTEEYDHL---------ISSFTGEGLEELINK 357
                +    K++ + S      D            S+  G GL +L++ 
Sbjct: 765 SKTPVVVCVNKTENVRSGIASAQDFWKLGLGQPFPCSAVEGVGLPDLLDA 814


>gi|297517161|ref|ZP_06935547.1| GTP-binding protein EngA [Escherichia coli OP50]
          Length = 202

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 4   KNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFIC 63

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 64  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 123

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
            +  K+D         D           I++  G G+  L+  +
Sbjct: 124 LVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 167


>gi|229829020|ref|ZP_04455089.1| hypothetical protein GCWU000342_01105 [Shuttleworthia satelles DSM
           14600]
 gi|229792183|gb|EEP28297.1| hypothetical protein GCWU000342_01105 [Shuttleworthia satelles DSM
           14600]
          Length = 441

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 26/224 (11%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + + +H  +  + +   +  +I ++G  N GKSSL N L  K   IV+DI GTTRD 
Sbjct: 156 DMLDAVIAHFPEPDILDREDDTPRIAVVGKPNVGKSSLINRLCGKQRLIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +          DTAG+R    I    E+  I R    VE AD+++L+ +       
Sbjct: 216 VDTRVRFNKKDYIFVDTAGLRRKSRIQGDIERYSIVRAVAAVEKADVVVLVIDGAEGVSE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI-KSILSNK 365
                  I+  +    I    K D      E+ +H +S        + I++I K++    
Sbjct: 276 QDAKIAGIAHERGKAVIIAVNKWDAV----EKDNHTMS--------DQIDRIHKTLSFML 323

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIAE 407
           + ++ F      + L  L + +  +  AS      G+  +I+AE
Sbjct: 324 YARIIFISALTGQRLGQLYEAIDQVIAASTMRVGTGVLNEIVAE 367



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 9/123 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFNALA + ++IV D PG TRD +  D+    +   + DT GI  ++
Sbjct: 6   VAVVGRPNVGKSTLFNALAGERISIVEDTPGVTRDRIYADVSWLDHEFTMIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + ++ AD+I+ + ++            ++        + +  K D +
Sbjct: 66  SDIILSQMREQAQIAIDTADVIIFMTDVRQGLVDADAKVADMLRRSKKPIVLVVNKVDDF 125

Query: 333 STY 335
             +
Sbjct: 126 DKH 128


>gi|158339018|ref|YP_001520195.1| GTP-binding protein EngA [Acaryochloris marina MBIC11017]
 gi|189037135|sp|B0C1P2|DER_ACAM1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|158309259|gb|ABW30876.1| GTP-binding protein engA [Acaryochloris marina MBIC11017]
          Length = 453

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 30/232 (12%)

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
           +A   +    D     S    N    L + +  + S+    E      K+ ++G  N GK
Sbjct: 131 QAAQFWELSLDEPLPVSGIHGNGTGDLLDQVVEYFSETPESEDEPE-IKVALVGRPNVGK 189

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289
           SSL NA   ++ +IV+ I GTTRD + + +       +  DTAGIR   ++    E  GI
Sbjct: 190 SSLLNAFVGENRSIVSPISGTTRDTIDMVVRRGEQTYRFIDTAGIRRKKNVSYGPEFFGI 249

Query: 290 KRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTKSDLYSTYT---EE 338
            R F  +  + ++L + +         ++++          + +  K D  +  T    E
Sbjct: 250 NRAFKAIRRSQVVLFVIDALDGVTEQDQKLAGRIIDDGRACVLVVNKWDAVTKDTYTINE 309

Query: 339 YD---------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +                  +S+ TG+ +E+++N + +      +++  S+ +
Sbjct: 310 FSKQIRSRLNFMEWAEMIFVSAQTGQRVEKILNLVDTAARQFEQRVTTSVIN 361



 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 60/169 (35%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L     AIV D PG TRD         G    + DT G+   D
Sbjct: 6   VAIVGRPNVGKSTLVNRLTGMMDAIVHDSPGVTRDRTYRPALWNGRDFSLVDTGGLVFDD 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEIN-----SKKEISF---PKNIDFIFIGTKSDLY 332
                    ++  + +  A +++++ +       +  EI+     ++   +    K +  
Sbjct: 66  QTEFLPFIRQQVMIALAEATVVVMVVDGQAGPTPADHEIAHWLRQQDTPVLLAVNKCESP 125

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                +               S   G G  +L++++    S   +    
Sbjct: 126 EQGITQAAQFWELSLDEPLPVSGIHGNGTGDLLDQVVEYFSETPESEDE 174


>gi|91784203|ref|YP_559409.1| GTP-binding protein EngA [Burkholderia xenovorans LB400]
 gi|123168328|sp|Q13X32|DER_BURXL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|91688157|gb|ABE31357.1| Small GTP-binding protein [Burkholderia xenovorans LB400]
          Length = 445

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 31/187 (16%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E    G KI I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    + D
Sbjct: 174 EKAARGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLID 233

Query: 274 TAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI----- 325
           TAG+R      + +EK  + +T   + +A++++LL +  ++++IS        F+     
Sbjct: 234 TAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLD--ARQDISEQDAHIAGFVVEQGR 291

Query: 326 -----GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSN 364
                  K D    +  E                  H IS+    G+  L+  +    + 
Sbjct: 292 ALVVGVNKWDGLDPHVRERTKADLERKLKFLDFAKFHFISAAEKTGIGPLMRSVDDAYAA 351

Query: 365 KFKKLPF 371
              KLP 
Sbjct: 352 AMAKLPT 358



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +         + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE +D+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKVGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              T   D           IS+  G+G+ E+IN+   +      +    
Sbjct: 125 KYSTVAADFYELGLGDPRAISAAHGDGVTEMINEALEVAYAGQPEENDD 173


>gi|190892852|ref|YP_001979394.1| GTP-binding protein [Rhizobium etli CIAT 652]
 gi|238692517|sp|B3PVJ6|DER_RHIE6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|190698131|gb|ACE92216.1| GTP-binding protein [Rhizobium etli CIAT 652]
          Length = 473

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
            D+   +     +T   ++ ADL L + +          +  E+   +    + +  KS+
Sbjct: 63  ADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
              + +  YD           IS+  G+G+ +L + I + +
Sbjct: 123 ARGSDSGFYDAYTLGLGEPTPISAEHGQGMIDLRDAIVAAI 163



 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 29/194 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R 
Sbjct: 203 LRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRR 262

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      +  A+ ++++ +     E        +   +    +    K
Sbjct: 263 KARVTEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLVLREGRAAVLAFNK 322

Query: 329 SD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D                  L           IS  TG GL++L+  I        K++ 
Sbjct: 323 WDMIEDRQAVLADLREKTDRLLPQARGIRAVPISGQTGWGLDKLMQSIIDTDRVWNKRIS 382

Query: 371 FSIPSHKRHLYHLS 384
            +  +       + 
Sbjct: 383 TARLNRWLETQQIQ 396


>gi|218781934|ref|YP_002433252.1| GTP-binding protein EngA [Desulfatibacillum alkenivorans AK-01]
 gi|226741134|sp|B8FM51|DER_DESAA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|218763318|gb|ACL05784.1| small GTP-binding protein [Desulfatibacillum alkenivorans AK-01]
          Length = 445

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 85/223 (38%), Gaps = 21/223 (9%)

Query: 127 EAESLADLISSET-----EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           EA+++A +   +      +      +  +   +  L  +             A+L     
Sbjct: 81  EADAIAMVFDGKDGPSPFDRDLLSVLRPLDKPIFYLVNKIDSLDMEYLMADFAEL----G 136

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            D  +  S E    +    + +   + +    ++  +   I ++G  NAGKSSL N +  
Sbjct: 137 VDKLHPVSGEHGYGVPTFLDMVVKVLPKAS-PKLEEDMISIGVVGRPNAGKSSLINKILG 195

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVEN 298
           ++  +V+D PGTTRD +     + G    + DTAGIR    +    EK  I R    +E 
Sbjct: 196 QERLLVSDTPGTTRDAVDTVCQVNGKPYLLLDTAGIRRKGKVKHKLEKFSIVRALKGLER 255

Query: 299 ADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
            D+ L++ +               +  +    IF+  K DL  
Sbjct: 256 CDVALVMLDATEGITDQDVHIAGYAEERKCGCIFLANKWDLVK 298



 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN + K   A+V D PG TRD    D + +G    + DT G  + D
Sbjct: 4   LAIMGRPNVGKSTLFNRITKSRKAMVDDSPGVTRDRNYADAEHDGVKFSVVDTGGFSKND 63

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD-- 330
            D        +    +E AD I ++ +              +  P +    ++  K D  
Sbjct: 64  PDAFVDLIHFQVNQAIEEADAIAMVFDGKDGPSPFDRDLLSVLRPLDKPIFYLVNKIDSL 123

Query: 331 ----LYSTYTE---EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               L + + E   +  H +S   G G+   ++ +  +L     KL   + 
Sbjct: 124 DMEYLMADFAELGVDKLHPVSGEHGYGVPTFLDMVVKVLPKASPKLEEDMI 174


>gi|313897444|ref|ZP_07830987.1| ribosome biogenesis GTPase Der [Clostridium sp. HGF2]
 gi|312957814|gb|EFR39439.1| ribosome biogenesis GTPase Der [Clostridium sp. HGF2]
          Length = 436

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 14/149 (9%)

Query: 198 FLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            + + +   + + +  E   +G  K  ++G  N GKSSL NA+  ++  IV++I GTTRD
Sbjct: 154 DVLDAVIHALPEKEKNEY--DGMTKFCVIGRPNVGKSSLVNAILNQERVIVSNIEGTTRD 211

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK-- 311
            +      EG    + DTAGIR+   +    EK  + R    +E +D++L++ +      
Sbjct: 212 AIDTPFKREGKEYVVIDTAGIRKRGKVYENIEKYSVLRAMSAIERSDVVLVVIDGEKGIR 271

Query: 312 ------KEISFPKNIDFIFIGTKSDLYST 334
                    +       + +  K D    
Sbjct: 272 DQDKHVAGYAHEAGKGVVIVYNKWDAVEK 300



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 18/173 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG  + I+G  N GKS++FN +  +  +IV D PG TRD +    +      ++ DT GI
Sbjct: 3   NGI-VAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTREFRVIDTGGI 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFIGTKS 329
           +  +   + E   +  + ++ AD I+ +         +      +        I    K 
Sbjct: 62  QLANQDFQTEINMQVEIAIDEADCIVFVVSGKDGLTHDDEYVARLLHKTKKPVILAVNKV 121

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           D ++     Y+           +S   G G+ ++++ +   L  K K     +
Sbjct: 122 DDFAQNDAIYEFYSLGLGDPLAVSGAHGIGIGDVLDAVIHALPEKEKNEYDGM 174


>gi|300741227|ref|ZP_07071248.1| ribosome-associated GTPase EngA [Rothia dentocariosa M567]
 gi|300380412|gb|EFJ76974.1| ribosome-associated GTPase EngA [Rothia dentocariosa M567]
          Length = 529

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 125/347 (36%), Gaps = 62/347 (17%)

Query: 86  HGGIAVVNGIL---EELAKM-PNL---RLANPGEFSRRAFENGKIDLLEAESLADLISSE 138
            G   ++N IL   E + +  P +   R++   E+  + F    +D    ES A  I ++
Sbjct: 86  VGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWVGKRF--TLVDTGGWESDARGIDAQ 143

Query: 139 TEMQRRLSMEGMS------------GELSSLYGQWIDKLTHIRSFIEADLDF----SEEE 182
              Q  +++E                       + + ++      +   +D      E  
Sbjct: 144 VADQAEIAVEQADVVILVVDARVGITASDEQIVRMLRRVKKPIILMANKIDDSHLEPEIY 203

Query: 183 DVQNFSSKEVLN----DILFLKNDISSHIS------QGKLGEIIRNGYKIVILGHSNAGK 232
            + +    +           L + +   +       Q    E      ++ ++G  N GK
Sbjct: 204 SLWSLGMGQPFPVSGLHGRGLADALDELLEVMPEHSQYAQPEAPGGPRRVALIGRPNVGK 263

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289
           SSL N LA  + A+V D+ GTTRD +   ++L GY  +  DTAGIR    +    E    
Sbjct: 264 SSLLNKLAGSERAVVNDLAGTTRDPIDEVIELGGYPWRFIDTAGIRRRQHMAKGAEFYSS 323

Query: 290 KRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD---------LY 332
            RT   +E +++ ++L +++           + +       +    K D         L 
Sbjct: 324 LRTQTALERSEVAVVLLDVSEPLSEQDVRIIQTTIDSGRAMVLAFNKWDTLDEERRDMLE 383

Query: 333 STYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                +  H        IS+ TG   ++L+  ++  L +   ++P  
Sbjct: 384 REIDRDLAHVKWAPRVNISAKTGWHKDKLVPALERSLESWDSRIPTG 430



 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 69/163 (42%), Gaps = 17/163 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++ N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 78  VAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWVGKRFTLVDTGGWESDA 137

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLYS 333
             ++ +   +  + VE AD+++L+ +       + ++ +   +      I +  K D   
Sbjct: 138 RGIDAQVADQAEIAVEQADVVILVVDARVGITASDEQIVRMLRRVKKPIILMANKIDDSH 197

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFK 367
              E Y            +S   G GL + ++++  ++    +
Sbjct: 198 LEPEIYSLWSLGMGQPFPVSGLHGRGLADALDELLEVMPEHSQ 240


>gi|118588128|ref|ZP_01545538.1| GTP-binding protein EngA [Stappia aggregata IAM 12614]
 gi|118439750|gb|EAV46381.1| GTP-binding protein EngA [Stappia aggregata IAM 12614]
          Length = 473

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 18/159 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L      I DTAG+ 
Sbjct: 2   GATVAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGDARLGDLRFTIIDTAGLE 61

Query: 279 ETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           + D    E    ++T   +E AD +L + +  +          E++       I +  K+
Sbjct: 62  DADKESLEGRMRRQTEEAIETADAVLFVIDARAGVTPLDAHFAEVARKTTRPVILLANKA 121

Query: 330 D-------LYSTYTEEY--DHLISSFTGEGLEELINKIK 359
           +       LY +Y+        IS+  GEGL +L + +K
Sbjct: 122 EGRAGESGLYESYSLGLGDPIAISAEHGEGLADLYDALK 160



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 74/186 (39%), Gaps = 29/186 (15%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +    ++ I+G  NAGKS+L N +  +D  +     G TRD +++D       +K+ DTA
Sbjct: 199 VERPLRVAIVGRPNAGKSTLINRMLGEDRMLTGPEAGITRDSISVDWVWRDRHIKLFDTA 258

Query: 276 GIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIF 324
           GIR+   +    EK  +      ++ A+++++  +      K+++        +    + 
Sbjct: 259 GIRKKARVQEKLEKLSVADALRAIKFAEVVVVTLDATMSFEKQDLQIIDLVAREGRALVV 318

Query: 325 IGTKSDLYSTYTEEYDHLI------------------SSFTGEGLEELINKIKSILSNKF 366
              K DL     E +  +                   S   G+G++ LI  + +      
Sbjct: 319 AINKWDLIEDREEAWKKIKDANERYFNQIRGVQIATLSGQQGQGIDRLIESVFTAYEAWN 378

Query: 367 KKLPFS 372
            ++  +
Sbjct: 379 ARVSTA 384


>gi|281358431|ref|ZP_06244912.1| ribosome-associated GTPase EngA [Victivallis vadensis ATCC BAA-548]
 gi|281315054|gb|EFA99086.1| ribosome-associated GTPase EngA [Victivallis vadensis ATCC BAA-548]
          Length = 513

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 33/190 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL----EGYLVKISDTA 275
             I ++G  N GKSSL NAL  ++  +V+D+ GTTRD + +D  L          + DTA
Sbjct: 198 LNIAVVGRPNVGKSSLVNALLGEERVMVSDVAGTTRDAIDVDFTLRYQGGDRAAVLVDTA 257

Query: 276 GIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFI 323
           G+R+    D +VE   + R    ++ ADL+L + E +             +        +
Sbjct: 258 GLRKKAKVDTVVEFFSVMRAQAAIDRADLVLFVVEASPDGMTAQDRRIASMIQKAGKACV 317

Query: 324 FIGTKSDLYS------TYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKF 366
            +  K DLY          EE  +            IS+     L+ L++ I  ++    
Sbjct: 318 VVANKFDLYKSGHKVRALEEELRYSLPGMNFSPVVFISAKDRSNLDGLLDSIAQVMDQLE 377

Query: 367 KKLPFSIPSH 376
             +P  + + 
Sbjct: 378 LSIPTGVLNR 387



 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 23/174 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + I+G  N GKSSLFNA+  + ++IV ++PG TRD +   L       ++ DT G+    
Sbjct: 17  VAIVGRPNVGKSSLFNAIVGRRLSIVHEMPGVTRDRVVAPLVRGKCRFQLIDTGGLGMLS 76

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGT 327
                 D+ +     +  + +  AD+++L+  +        +E++          +F   
Sbjct: 77  GETRKVDMWDSRIASQVDIAIGGADVLILVANVQDGVVNLDEEVAARLRESGKPVLFAAN 136

Query: 328 KSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           K D  +   E  + +          S     G+  L+     +L     +   S
Sbjct: 137 KCDNPTLEHESVEFMKLGFRKIFPVSCLHKRGVNALVEAAIKLLPQNVSEDGES 190


>gi|332362231|gb|EGJ40031.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1056]
          Length = 436

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPNEEVAENP-DMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ 
Sbjct: 213 IDTVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       + +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGIVIVVNKWDTLDKDNHTMKDWEEDIRDQFQYLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              E +D           +SS  G G  ++++ I   L N+       + 
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVAENPDMI 175


>gi|262282140|ref|ZP_06059909.1| GTP-binding protein engA [Streptococcus sp. 2_1_36FAA]
 gi|262262594|gb|EEY81291.1| GTP-binding protein engA [Streptococcus sp. 2_1_36FAA]
          Length = 436

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPNEEVAENP-DMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ 
Sbjct: 213 IDTVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       + +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGIVIVVNKWDTLEKDNYTMKDWEADIRDQFQYLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV ++ G TRD +    D       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVENVEGVTRDRIYATADWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADAIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              E +D           +SS  G G  ++++ I   L N+       + 
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVAENPDMI 175


>gi|78213545|ref|YP_382324.1| GTP-binding protein EngA [Synechococcus sp. CC9605]
 gi|123577697|sp|Q3AI13|DER_SYNSC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78198004|gb|ABB35769.1| Small GTP-binding protein domain [Synechococcus sp. CC9605]
          Length = 455

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + + +             ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD 
Sbjct: 156 ELLDQVLTFLPPKDQEGDEEEPIQMAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDT 215

Query: 258 LTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +   +  E    ++ DTAGI   R  +   E  GI R+F  +E +D+ +L+ +       
Sbjct: 216 IDTSIIRENRPWRLVDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTE 275

Query: 309 -NSKKEISFPKNIDFI-FIGTKSDLYST 334
            + +      ++      +  K D    
Sbjct: 276 QDQRLAGRIEEDGRACVVVVNKWDALEK 303



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           D     E  ++  L +E A + L++ +          S  E         +    K +  
Sbjct: 66  DSEFLPEIREQAALALEEASVALVIVDGQQGLTAADESIAEFLRSHRCPTLLAVNKCESP 125

Query: 333 S---TYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                   E+        H IS+  G G  EL++++ + L  K ++   
Sbjct: 126 EQGLAMAGEFWSLGLGEPHPISAIHGAGTGELLDQVLTFLPPKDQEGDE 174


>gi|78189608|ref|YP_379946.1| GTP-binding protein EngA [Chlorobium chlorochromatii CaD3]
 gi|123743429|sp|Q3AQ22|DER_CHLCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78171807|gb|ABB28903.1| Small GTP-binding protein domain [Chlorobium chlorochromatii CaD3]
          Length = 443

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 12/162 (7%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKD 243
             F S +  + +  L +D+   + +   GE+  +    + I+G  N GKSS  NAL   +
Sbjct: 142 PYFVSAKDGSGVADLLDDVLEALPEAPEGEVKGDTAVHLAIVGRPNVGKSSFVNALLGTN 201

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENAD 300
             IV++IPGTTRD +   L        + DTAG+R+    D  +E     R+   +E  +
Sbjct: 202 RHIVSNIPGTTRDAIDSRLMRNQQEYLLIDTAGLRKRTKIDAGIEYYSSLRSERAIERCE 261

Query: 301 LILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYST 334
           + +++ +     E        ++  +    + +  K DL   
Sbjct: 262 VAIVMLDAEQGIEKQDLKIINMAIERKKGVLLLVNKWDLIEK 303



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 73/167 (43%), Gaps = 19/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN + ++  AIV   PG TRD    + + +G   K+ DT G     
Sbjct: 5   LALVGRPNVGKSTLFNRILRQRSAIVDPTPGVTRDRHIAEGEWQGKQFKLMDTGGYNTDG 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPK-------NIDFIFIGTKSDL 331
           D++ K  +++T   + +AD IL + +  +    +++   +       +    F+  K + 
Sbjct: 65  DVLSKAMLEQTLHALADADSILFITDARAGLSYEDLELARILQRSFQHKQLFFVVNKVES 124

Query: 332 YSTYTEE---------YDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                E            + +S+  G G+ +L++ +   L    +  
Sbjct: 125 PQLVIEAESFIKTGFTTPYFVSAKDGSGVADLLDDVLEALPEAPEGE 171


>gi|218459464|ref|ZP_03499555.1| GTP-binding protein EngA [Rhizobium etli Kim 5]
          Length = 191

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGEARLMGLNFTIIDTAGLEE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
            D+   +     +T   ++ ADL L + +          +  E+   +    + +  KS+
Sbjct: 63  ADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANKSE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSIL 362
              + +  YD           IS+  GEG+ +L + I   +
Sbjct: 123 ARGSDSGFYDAYTLGLGEPKPISAEHGEGMLDLRDAIVEAI 163


>gi|227529194|ref|ZP_03959243.1| GTP-binding protein EngA [Lactobacillus vaginalis ATCC 49540]
 gi|227350919|gb|EEJ41210.1| GTP-binding protein EngA [Lactobacillus vaginalis ATCC 49540]
          Length = 437

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 8/129 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKNFNLIDTGGIEISD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKE---ISFPKNIDFIFIGTKSDLYS 333
             +  +  ++  + ++ AD+I+L+ +I     ++ ++   I +  +   +    K D   
Sbjct: 66  QPLLTQIRQQAEVAIDEADVIVLVVDIQNGVTDADEQVAKILYRSDKPIVLAVNKVDNPE 125

Query: 334 TYTEEYDHL 342
             ++ YD  
Sbjct: 126 RRSDIYDFY 134



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 17/151 (11%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +H  +    E         ++G  N GKSSL NA+  ++  IV+++ GTTRD 
Sbjct: 154 DLLDAVINHFPETADNE-DDGTIHFSLIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDA 212

Query: 258 LTIDLD-LEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +       +G    + DTAGIR+   I    E+  + R+   ++++D++L++  +N+++ 
Sbjct: 213 INTRFTAKDGREFTMIDTAGIRKKGKIYENTERYSLMRSMRAIDDSDVVLVV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST 334
           I          +       I +  K D    
Sbjct: 271 IRELDKHIAGYAHEAGCGVIIVVNKWDTIKN 301


>gi|150021499|ref|YP_001306853.1| GTP-binding protein EngA [Thermosipho melanesiensis BI429]
 gi|166225930|sp|A6LNG7|DER_THEM4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|149794020|gb|ABR31468.1| small GTP-binding protein [Thermosipho melanesiensis BI429]
          Length = 437

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 94/244 (38%), Gaps = 41/244 (16%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQ-----------GKLGEIIRNGYKIVILG 226
           F   +D  +    E L        +I   I +            +  E   +  ++ ++G
Sbjct: 127 FVNFDDFYSLGFGEPLFISAEQGKNIDRLIEEVIKRLEKKGLKLEEEEEKDSIIRVALIG 186

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             NAGKS+LFN + +++ A+VT IPGTTRD +   +++ G      DTAG+R    +  K
Sbjct: 187 RPNAGKSTLFNGILERERALVTPIPGTTRDAIDELVEINGKKYLFIDTAGLRRKSKVEYK 246

Query: 287 ----EGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYST 334
                   R+   +E +D+++ + +              I+  +    + +  K DL   
Sbjct: 247 SIDMYSNVRSIKSIELSDVVVFVIDSLEGITHQDQKIAGIAENRGKATVVVFNKIDLVKN 306

Query: 335 Y---TEEYDHLI---------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           +    +E+                   S+    G+ +LI  IK   ++ F ++  S  + 
Sbjct: 307 FKYRKQEFIEHFMERLYFVSYSPVVFVSAQERYGIGKLIKAIKEAYNSLFYRVQTSAVNA 366

Query: 377 KRHL 380
               
Sbjct: 367 VIQR 370



 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 19/156 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           ++I+G SN GKS+LFN L  K  +IV +  G TRD ++  +   G   K+ DT GI E  
Sbjct: 4   VLIVGKSNVGKSTLFNKLIGKKKSIVDNKEGVTRDAVSDRVSYFGKSFKLIDTCGIFERP 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLY 332
           +DI+ +     T   +   D+I+ + +             ++    N D I +  KS+  
Sbjct: 64  EDIISERLKNLTLNMLSEGDIIIFVVDGKYGLTSEDYHLADLLRKSNSDVILVVNKSENE 123

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKI 358
                 +D             S+  G+ ++ LI ++
Sbjct: 124 KKVFVNFDDFYSLGFGEPLFISAEQGKNIDRLIEEV 159


>gi|94971659|ref|YP_593707.1| GTP-binding protein EngA [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553709|gb|ABF43633.1| Small GTP-binding protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 511

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 18/204 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           I I+G  N GKS+LFN L  +  AIV D PG TRD L    +  G  +++ DT GI  + 
Sbjct: 17  IAIVGRPNVGKSTLFNRLVGQRRAIVGDEPGITRDRLYGYSEWAGKRLRVVDTGGIVPDD 76

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPK-----NIDFIFIGTKSD-- 330
           + ++  E  ++  + +E AD+I+++ +  ++    +I   +         I    K D  
Sbjct: 77  EALIPAEIFRQAKVALEEADVIVMVVDARTELASPDIDLARLLQRTGKPLILAVNKIDDP 136

Query: 331 LYSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
              +Y E++          IS+    G+ EL+ +I   +  K          +      L
Sbjct: 137 KLESYVEDFRRLGIRTMVPISAEHSTGVAELLEEILERIPEKAAGDKTVEDKNAGARPAL 196

Query: 384 SQTVRYLEMASLNEKDCGLDIIAE 407
                  E A   +    +D+ +E
Sbjct: 197 RNAKTAAEPADTFDDQPSVDLDSE 220



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 13/151 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS++ N L     AIV+ I GTTRD +   ++ +G + +  DTAGIR 
Sbjct: 240 IKIAIIGRPNVGKSTMLNRLTGTARAIVSPIAGTTRDAVDEVVERDGQIFRFIDTAGIRR 299

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
                   EK  +      +E ADL L+L +               +       I +  K
Sbjct: 300 KGKTRLMAEKLSVVMARKHLEAADLALVLIDATEGVTAIDATIAGYAHEAGRSVIVVINK 359

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
            DL +      D   ++      E++   +K
Sbjct: 360 WDLVT--INRADGKPAAKVDIFEEQVRRHLK 388


>gi|324993642|gb|EGC25561.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK405]
 gi|324995046|gb|EGC26959.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK678]
 gi|327462911|gb|EGF09232.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1]
          Length = 436

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  K  ++G  N GKSSL NA+  ++  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPNEEVAENP-DMIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ 
Sbjct: 213 IDTVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       + +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              E +D           +SS  G G  ++++ I   L N+       + 
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVAENPDMI 175


>gi|260591202|ref|ZP_05856660.1| ribosome-associated GTPase EngA [Prevotella veroralis F0319]
 gi|260537067|gb|EEX19684.1| ribosome-associated GTPase EngA [Prevotella veroralis F0319]
          Length = 437

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 22/153 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +       G+   + DTAGIR  
Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRK 236

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
           + +    E   + R+   +ENAD+ +L+ +     E        +    N   + +  K 
Sbjct: 237 NKVTEDLEFYSVMRSIRSIENADVCILMLDATRGIESQDMNIFQLIQRNNKSLVVVVNKW 296

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           DL     ++            ++  +N I+S +
Sbjct: 297 DLVPDKNQKV-----------IDTFVNAIRSRM 318



 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 9/130 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L +   AIV+D  GTTRD         G    + DT G + ++
Sbjct: 5   VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWVVKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DD+ E    K+  +  E ADL+L L +  +           I     +  + +  K D  
Sbjct: 65  DDVFEDAIRKQVLVATEEADLVLFLVDTETGVTDWDEDVAMILRRTKLPVLLVANKVDNS 124

Query: 333 STYTEEYDHL 342
             Y +  +  
Sbjct: 125 GEYYQAAEFY 134


>gi|167587055|ref|ZP_02379443.1| GTP-binding protein EngA [Burkholderia ubonensis Bu]
          Length = 445

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GTKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSIADANVVILLLD--ARQDISDQDAHIAGFVVEQGRALVVG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  E                  H IS+    G+  L+  +         KL
Sbjct: 297 VNKWDGLDPHVRERTKADLTRKLKFLEFAKFHFISAAEKTGIGPLMRSVDDAYGAAMAKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +     + ++ S              +  KS+  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKSEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D           IS+  G+G+ E+IN+   +      +   
Sbjct: 125 KYTAVASDFYELGLGDPRAISAAHGDGVTEMINEALGVAYAGQPEEED 172


>gi|330752592|emb|CBL87538.1| GTP-binding protein [uncultured Flavobacteria bacterium]
          Length = 447

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 30/209 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +D+ S +   +  +I        ++G  NAGKSS  NA+  K+  IVT I GTTRD 
Sbjct: 167 ELLDDLISQMPDEEK-KIGDELPNFAVVGRPNAGKSSFINAIIGKERNIVTKIAGTTRDS 225

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +       G+   + DTAGIR+   I   +E   I R+   +E AD+ +L+ +     + 
Sbjct: 226 INSRYKRFGFDFNLIDTAGIRKKTKIKEDIEFYSIMRSVRSIEYADVCILIVDATRGFDG 285

Query: 314 -------ISFPKNIDFIFIGTKSDLY---STYTEEYDHLI---------------SSFTG 348
                  ++   N   + +  K DL+   S  T+EY+  I               SS T 
Sbjct: 286 QVQNIFWLTHRNNKGIVILVNKWDLFEKSSNATKEYEIQIREAISPFKDVPIVFVSSLTK 345

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHK 377
           + + + ++    +  N+ +K+P  I +++
Sbjct: 346 QRIYKAVSTAIEVFKNRKRKIPTKILNNE 374



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 18/175 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + I+G  N GKS+ FN + +K  AIV    G TRD      D  G    + DT G  
Sbjct: 15  GGIVAIVGRPNVGKSTFFNRMVQKRDAIVDSQSGVTRDRHYGKSDWNGRGFTLIDTGGYL 74

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
           E ++D+ +KE  K+  L VE AD I+ + ++         +  ++    +        K 
Sbjct: 75  ENSEDVFQKEIDKQVSLAVEEADAIIFIVDVIDGVTGMDQNIAKLLRRSSKPIYLAINKV 134

Query: 330 DLYS--TYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           D  S    T E+        + ISS +G G  EL++ + S + ++ KK+   +P+
Sbjct: 135 DNTSRTQMTSEFYSLGYKNFYCISSVSGSGTGELLDDLISQMPDEEKKIGDELPN 189


>gi|225024393|ref|ZP_03713585.1| hypothetical protein EIKCOROL_01268 [Eikenella corrodens ATCC
           23834]
 gi|224942774|gb|EEG23983.1| hypothetical protein EIKCOROL_01268 [Eikenella corrodens ATCC
           23834]
          Length = 485

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 104/282 (36%), Gaps = 36/282 (12%)

Query: 127 EAESLADLISSET---EMQRRLS--MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           EA+++  L+ + T      + ++  +      +     +       + +    +L   E 
Sbjct: 82  EADAVIFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNKGEGGRRDVLAAEFYELALGE- 140

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
               +  S    + + +L  ++  +  +    +         ++G  N GKS+L NA+  
Sbjct: 141 ---PHVISGAHGDGVYYLMEEVLENFPEATEEDSEVKHPVFAVIGRPNVGKSTLVNAILG 197

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVEN 298
           ++  I  D+ GTTRD + ID + +G    I DTAG+R   + ++ VEK  + +    VE 
Sbjct: 198 EERVIAFDMAGTTRDSIHIDFERDGKPFTIIDTAGVRRRGKVEEAVEKFSVIKAMQAVEA 257

Query: 299 ADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---------- 340
           +++ +L+ +               +       +    K D  S                 
Sbjct: 258 SNVAVLVLDAQQDIADQDATIAGFALEAGRALVVAVNKWDGISEERRNTIKKDIEHKLHF 317

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                 H IS+    G++ L   I+S     F K+P    + 
Sbjct: 318 LDFAKFHFISALKERGIDGLFASIQSAYDAAFIKMPTPKITR 359



 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVVDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVIFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -SDLYSTYTEEY----DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             D+ +    E      H+IS   G+G+  L+ ++        ++    
Sbjct: 125 RRDVLAAEFYELALGEPHVISGAHGDGVYYLMEEVLENFPEATEEDSEV 173


>gi|160915095|ref|ZP_02077308.1| hypothetical protein EUBDOL_01103 [Eubacterium dolichum DSM 3991]
 gi|158432894|gb|EDP11183.1| hypothetical protein EUBDOL_01103 [Eubacterium dolichum DSM 3991]
          Length = 436

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 32/208 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            + ++I     +    E    G  +  ++G  N GKSSL NA+  +D  IV++I GTTRD
Sbjct: 154 DILDEIVHSFPKKAFNEY--EGMTRFCLIGRPNVGKSSLVNAILDQDRVIVSNIEGTTRD 211

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK-- 311
            +      EG    + DTAGIR    +    EK  + R    +E +D++L++ +  +   
Sbjct: 212 AIDTPFTREGKDYVVIDTAGIRRRGKVYENIEKYSVLRAMSAIERSDVVLVVIDGETGIR 271

Query: 312 ------KEISFPKNIDFIFIGTKSDLYST--------YTEEYDH----------LISSFT 347
                    +       I +  K D              E Y H           +S+  
Sbjct: 272 EQDKHVAGYAHEAGKGVIIVYNKWDAVEKDERTMVKIEKEIYAHFLYLNYAPIVFVSALK 331

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPS 375
            + +  L+  I  +      ++P ++ +
Sbjct: 332 KQRIHTLLPMIDEVHDYSLLRIPTNVLN 359



 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 17/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  +  +IV D PG TRD +    +      ++ DT GI+  D
Sbjct: 6   VAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTKEFRLIDTGGIQLED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFIGTKSDLYS 333
              ++E   +  + +E AD I+ +         +      +    N   I    K D  S
Sbjct: 66  QDFQQEIQMQVEIAIEEADAIVFVVSGREGVTRDDEYIARLLQKTNKKIILAVNKIDDES 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                Y+            S   G G+ +++++I      K       +
Sbjct: 126 LQPSIYEFYQLGVGDPIAVSGSHGIGIGDILDEIVHSFPKKAFNEYEGM 174


>gi|46203982|ref|ZP_00209197.1| COG0486: Predicted GTPase [Magnetospirillum magnetotacticum MS-1]
          Length = 132

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 1/132 (0%)

Query: 309 NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
             + +         + + TK+DL +   E     IS+ TG GL+ L++ I++        
Sbjct: 2   GDRPDRQAVTGAPTLVVQTKADLAAGGAEPQGLAISAVTGAGLDALLDAIQAAAEASLGH 61

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428
              ++ + +RH   L++  ++LE           +++AE+LRLA  +LG++ G V VE++
Sbjct: 62  GD-ALITRERHREALTRAAQHLERLITAPSGFPPELLAEDLRLAVRALGEVGGHVGVEEM 120

Query: 429 LDIIFSKFCIGK 440
           LD +F+ FCIGK
Sbjct: 121 LDRLFAGFCIGK 132


>gi|255021269|ref|ZP_05293318.1| GTP-binding protein EngA [Acidithiobacillus caldus ATCC 51756]
 gi|254969280|gb|EET26793.1| GTP-binding protein EngA [Acidithiobacillus caldus ATCC 51756]
          Length = 447

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 117/316 (37%), Gaps = 50/316 (15%)

Query: 121 GKIDLLEAESLADLISSETEMQ---------RRLSMEGMSGELSSLYGQWIDK------L 165
           G  +  E E L   ++++T               + EG+S +   +  +          +
Sbjct: 58  GGFEPEEREGLVAAMAAQTRQAIAEADAVCFLVDAKEGLSAQDEEIAAELRRSGKTVYLV 117

Query: 166 THIRSFIEADLDFSEEEDV----QNFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNG 219
            +      A  +  E   +        +    + +  L + I + ++  +    E+  +G
Sbjct: 118 VNKMDVRGAVAELPEFHRLGLGMPYTIAASHGHGVETLLDAIFADLAVPEEAAAELSLSG 177

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I +LG  N GKS+L NA+  +   IV D PGTTRD + I  +  G    + DTAGIR 
Sbjct: 178 PRIAVLGRPNVGKSTLVNAMLGEQRVIVYDAPGTTRDSIRIPYERAGRPYVMIDTAGIRR 237

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              +    EK  + +T   ++ AD++L++ +              ++       I +  K
Sbjct: 238 RARVGEGLEKLSVLKTLAALKEADVVLMVLDARDGVTDQDAHLVGVAAELWRPMILLLNK 297

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D       +                  + IS+  G G+ +L   I  +   +  +  FS
Sbjct: 298 WDGLDARARQMAKAALERHLGFLSYAPVYTISALHGSGVGDLYPSIDRL--WRDARRHFS 355

Query: 373 IPSHKRHLYHLSQTVR 388
                R L  + ++ +
Sbjct: 356 TAELNRVLAQIIESHQ 371



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 57/155 (36%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+PG TRD              + DT G    +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSREALVADLPGLTRDRHYGVAQHGTQRFLVIDTGGFEPEE 64

Query: 282 DIVEK-EGIKRTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTKSDLY 332
                     +T   +  AD +  L +         +EI+            +  K D+ 
Sbjct: 65  REGLVAAMAAQTRQAIAEADAVCFLVDAKEGLSAQDEEIAAELRRSGKTVYLVVNKMDVR 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKI 358
               E  +            ++  G G+E L++ I
Sbjct: 125 GAVAELPEFHRLGLGMPYTIAASHGHGVETLLDAI 159


>gi|116253295|ref|YP_769133.1| GTP-binding protein EngA [Rhizobium leguminosarum bv. viciae 3841]
 gi|166225846|sp|Q1MDD6|DER_RHIL3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|115257943|emb|CAK09041.1| putative engA GTP-binding protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 473

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
            D    +     +T   ++ ADL L + +             E+   +    + +  KS+
Sbjct: 63  ADAESLQGRMRAQTEAAIDEADLSLFVVDAKSGLTPVDTDLAEMLRRRGKPVVLVANKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370
              + +  YD           IS+  G+G+ +L + I + +        
Sbjct: 123 ARGSDSGFYDAYTLGLGEPTPISAEHGQGMLDLRDAIVAAIGEDRAYPE 171



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 89/255 (34%), Gaps = 37/255 (14%)

Query: 159 GQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN 218
              +D    I + I  D  + E+EDV         +     +++        K       
Sbjct: 150 QGMLDLRDAIVAAIGEDRAYPEKEDVAVTDVDIPQSSDEGDEDE-EPIYDDTK------- 201

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R
Sbjct: 202 PLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMR 261

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGT 327
               ++   EK  +      +  A+ ++++ +     E        +   +    +    
Sbjct: 262 RKARVIEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLVLREGRAAVLAFN 321

Query: 328 KSD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           K D                  L           IS  TG GL++L+  I        K++
Sbjct: 322 KWDMIEDRQAVLADLREKTDRLLPQARGIRAVPISGQTGWGLDKLMQAIIDTDKVWNKRI 381

Query: 370 PFSIPSHKRHLYHLS 384
             +  +       + 
Sbjct: 382 STARLNRWLETQQVQ 396


>gi|78184221|ref|YP_376656.1| GTP-binding protein EngA [Synechococcus sp. CC9902]
 gi|123581907|sp|Q3AZ65|DER_SYNS9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78168515|gb|ABB25612.1| Small GTP-binding protein domain [Synechococcus sp. CC9902]
          Length = 455

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 11/149 (7%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             + + + + +             ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD
Sbjct: 155 AEVLDQVLTFLPPKDQEGDEEEPIQMSIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRD 214

Query: 257 VLTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI----- 308
            +  ++  E    ++ DTAGI   R  +   E  GI R+F  +E +D+ +L+ +      
Sbjct: 215 TIDTNIVRENRPWRLVDTAGIRRRRSVNYGPEYFGINRSFKAIERSDVCVLVIDALDGVT 274

Query: 309 --NSKKEISFPKNIDFI-FIGTKSDLYST 334
             + +      ++      +  K D    
Sbjct: 275 EQDQRLAGRIEEDGRACVVVVNKWDAVEK 303



 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           D     E  ++  L ++ A + L++ +          S  E    +    +    K +  
Sbjct: 66  DSEFLPEIREQAALALDEASVALVIVDGKQGLTAADESIAEFLRQQRCPTLLAVNKCESV 125

Query: 333 ST----------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                             + IS+  G G  E+++++ + L  K ++   
Sbjct: 126 EQGLAMAAEFWSLGLGEPYPISAIHGAGTAEVLDQVLTFLPPKDQEGDE 174


>gi|88809283|ref|ZP_01124792.1| GTP-binding protein EngA [Synechococcus sp. WH 7805]
 gi|88787225|gb|EAR18383.1| GTP-binding protein EngA [Synechococcus sp. WH 7805]
          Length = 455

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 11/149 (7%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L + + +++             ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD
Sbjct: 155 AELLDQVLTYLPPKSQEGDSEEPIQLAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRD 214

Query: 257 VLTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI----- 308
            +   L  E    ++ DTAGI   R      E  GI R+F  +E +D+ +L+ +      
Sbjct: 215 TIDTSLVRENRPWRLVDTAGIRRRRSVSYGPEFFGINRSFKAIERSDVCVLVIDALDGVT 274

Query: 309 --NSKKEISFPKNIDFI-FIGTKSDLYST 334
             + +      ++      +  K D    
Sbjct: 275 EQDQRLAGRIEEDGRACVVVVNKWDAVEK 303



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L     AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCHSREAIVHDEPGVTRDRTYQDGYWSDREFKVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKN--IDFIFIGTKSDLY 332
           D     E  ++  L +E A + L++ +       + +    F +      +    K +  
Sbjct: 66  DSEFLPEIREQAALALEEASVALVIVDGQQGVTASDEAIAEFLRGQRCPALLAVNKCESP 125

Query: 333 ST----------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                             + IS+  G G  EL++++ + L  K ++   
Sbjct: 126 EQGLAMAAEFWSLGLGEPYPISAIHGAGTAELLDQVLTYLPPKSQEGDS 174


>gi|332530165|ref|ZP_08406113.1| GTP-binding protein Der [Hylemonella gracilis ATCC 19624]
 gi|332040357|gb|EGI76735.1| GTP-binding protein Der [Hylemonella gracilis ATCC 19624]
          Length = 444

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/305 (17%), Positives = 113/305 (37%), Gaps = 48/305 (15%)

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +  + EA+++  ++ +   +  +        ++++   +         +  E   + ++ 
Sbjct: 77  RQAVAEADAVIFVVDARAGLSAQ------DHDIANYLRKLGKPCVLTANKAEGMQEGAQL 130

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQG---------KLGEIIRNG-YKIVILGHSNAG 231
            +       EVL         + + + Q             + +  G  +  + G  N G
Sbjct: 131 AEFYELGLGEVLPVSAAHGQGLRTLVDQALEPLNLPQEDEEDAVEPGVIRFAVAGRPNVG 190

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEG 288
           KS+L N    ++  I  D+PGTTRD + +  + +G   ++ DTAG+R    +    EK  
Sbjct: 191 KSTLINTWLGEERLIAFDMPGTTRDAIRVPFERQGQKFELIDTAGLRRKGRVFEAVEKFS 250

Query: 289 IKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTKSDLYSTYTEEYD 340
           + +T   +E+A+++LLL +      +    I+          +    K D    Y  +  
Sbjct: 251 VVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVLAVNKWDAVDDYQRQQL 310

Query: 341 ----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                           HLIS+   +GLE L   +        +K+   + +       L 
Sbjct: 311 QRQLETRLTFLKFANLHLISARKRQGLEPLWKSMLKAHQAANRKMSTPVLTR-----LLQ 365

Query: 385 QTVRY 389
           Q V++
Sbjct: 366 QAVQF 370



 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 18/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   AIV D  G TRD    +         + DT G   T 
Sbjct: 5   LALVGRPNVGKSTLFNRLTQTRDAIVADYAGLTRDRHYGNGRQGRREFIVIDTGGFEPTA 64

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLY 332
           +  + KE   +T   V  AD ++ + +  +                    +    K++  
Sbjct: 65  ETGIYKEMANQTRQAVAEADAVIFVVDARAGLSAQDHDIANYLRKLGKPCVLTANKAEGM 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               +  +            S+  G+GL  L+++    L+   +    ++
Sbjct: 125 QEGAQLAEFYELGLGEVLPVSAAHGQGLRTLVDQALEPLNLPQEDEEDAV 174


>gi|332359145|gb|EGJ36966.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK49]
          Length = 436

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPNEEVAENP-DMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ 
Sbjct: 213 IDTVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGIIIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              E +D           +SS  G G  ++++ I   L N+       + 
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVAENPDMI 175


>gi|319938676|ref|ZP_08013040.1| GTP-binding protein engA [Streptococcus anginosus 1_2_62CV]
 gi|319811726|gb|EFW07992.1| GTP-binding protein engA [Streptococcus anginosus 1_2_62CV]
          Length = 436

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 90/210 (42%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPNEEAAENT-DMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ 
Sbjct: 213 IDTVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISS 345
           I          +       I +  K D      +                       +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGIIIVVNKWDTLEKDNKTMQNWEADIRDQFQYLSYAPIVFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK+I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPEMIKNISQSQNTRIPSAVLN 360



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    D       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATADWLNRKFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +E +D           +SS  G G  ++++ I   L N+       + 
Sbjct: 126 MRSEIFDFYALGLGDPYPVSSVHGIGTGDVLDAIVENLPNEEAAENTDMI 175


>gi|139474375|ref|YP_001129091.1| GTP-binding protein EngA [Streptococcus pyogenes str. Manfredo]
 gi|166225865|sp|A2RGB0|DER_STRPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|134272622|emb|CAM30889.1| GTP-binding protein EngA [Streptococcus pyogenes str. Manfredo]
          Length = 436

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV DI G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDIEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 66  APFMEQIKHQAQIAMEEADVIVFVVSGKEGVTDADEYVSKILYRTNTPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  +  +    I 
Sbjct: 126 MRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPVEEAEENDDII 175



 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 90/210 (42%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  +  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLP-VEEAEENDDIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D +G    + DTAG+R++  I    EK  + R    ++ + ++L++  IN+++ 
Sbjct: 213 IDTHFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSGVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       T      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTIDKDNHTVAKWEADIRDQFQFLTYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++ K++P ++ +
Sbjct: 331 LTKQRLNKLPDLIKRISESQNKRIPSAVLN 360


>gi|88802177|ref|ZP_01117705.1| GTP-binding protein EngA [Polaribacter irgensii 23-P]
 gi|88782835|gb|EAR14012.1| GTP-binding protein EngA [Polaribacter irgensii 23-P]
          Length = 436

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 11/128 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  KD  IVT+I GTTRD +    +  G+   + DTAGIR+ 
Sbjct: 178 RFAVVGRPNAGKSSFINALIGKDRNIVTNIAGTTRDSIDTKYNRFGFDFNLVDTAGIRKK 237

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
             +    E   + R    +E AD+I+L+ +     E        ++       I +  K 
Sbjct: 238 SKVKEDLEFYSVMRAVRSIEYADVIILVVDATRGFEGQDQSIFWLAEKNRKGVIILINKW 297

Query: 330 DLYSTYTE 337
           DL    T 
Sbjct: 298 DLVEKETN 305



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L ++  AIV  + G TRD      D  G    + DT G    +
Sbjct: 5   VAIVGRPNVGKSTLFNRLVQRRDAIVDSVSGVTRDRHYGKSDWNGKEFSVIDTGGYSIGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DDI E+E  K+  L +E AD+I+ + ++            +I             K D  
Sbjct: 65  DDIFEEEIRKQVTLAIEEADIIVFVVDVEEGITPMDAEVAKILRKIKKPIFVTVNKVDNA 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILS 363
                  +         H ISS  G G  +L++ I + + 
Sbjct: 125 MRDANAVEFYNLGLGGYHTISSINGSGTGDLLDAIAAKMP 164


>gi|323340745|ref|ZP_08080997.1| ribosome-associated GTPase EngA [Lactobacillus ruminis ATCC 25644]
 gi|323091868|gb|EFZ34488.1| ribosome-associated GTPase EngA [Lactobacillus ruminis ATCC 25644]
          Length = 436

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTVFNRIAGERISIVEDTPGVTRDRIYARSEWMGQAFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+        + + + K   I +  +   I    K D   
Sbjct: 66  EPFVTQITEQAEIAIDEADVIVFVTSVKEGVTDADEKVARILYKTDKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
             +E YD           IS   G G  +L++ I         + 
Sbjct: 126 VRSEIYDFYSLGFGDPVPISGTHGIGTGDLLDLIVKNFPEDVTEE 170



 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I  +  +  + E I +  K   +G  N GKSSL NA+  ++  IV++I GTTRD 
Sbjct: 154 DLLDLIVKNFPE-DVTEEIDDSIKFSFIGRPNVGKSSLVNAILGENRVIVSNIEGTTRDA 212

Query: 258 LTIDLDL-EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +       +G +  + DTAGIR+   +    EK  + R    ++ +D++ ++  +N+++ 
Sbjct: 213 IDTKFTTEDGSVYTMIDTAGIRKKGKVYENTEKYSVLRAMQAIDRSDVVCVV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSD-----------LYSTYTEEYDH-------LISS 345
           I          +       + +  K D             S    E+ +        +S+
Sbjct: 271 IREQDKHVAGYAHDAGRGIVIVVNKWDTLKKDSYTMKEFESHIRNEFQYLSYAPIVFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L EL   I+ +  N  K++  ++ +
Sbjct: 331 KTHQRLNELPKLIRRVDENHSKRVSSAVLN 360


>gi|254283197|ref|ZP_04958165.1| GTP-binding protein EngA [gamma proteobacterium NOR51-B]
 gi|219679400|gb|EED35749.1| GTP-binding protein EngA [gamma proteobacterium NOR51-B]
          Length = 472

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 84/218 (38%), Gaps = 31/218 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLG----EIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +       +    + + + S +S    G    E    G ++  +G  N GKS+L N L  
Sbjct: 138 DGMHAIAASHNRGISSMMQSVLSDYSQGDESLERSDGGIRVAAIGRPNVGKSTLINRLLG 197

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVEN 298
            D  +V D PGTTRD + ID +  G    + DTAG+R   ++    EK  I +T   + +
Sbjct: 198 DDRVVVFDEPGTTRDSIYIDFERRGQAYTLIDTAGVRRRKNVRETVEKFSIVKTLKAIAD 257

Query: 299 ADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLYSTYTEEY----------- 339
           A +++LL + +    ++++             +    K D       ++           
Sbjct: 258 AHVVILLMDAHEGVVEQDLHLLGQCIDAGRGLVIAVNKWDGVDPDERDWIRSELQRRLQF 317

Query: 340 -----DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 H IS+  G G+  L   +    S   K L  +
Sbjct: 318 VDYADIHFISALHGTGVGHLYESVGRAYSAAIKSLSTN 355



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V ++ G TRD    D  +      + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNQLTRTRDALVANLSGLTRDRQYGDGKVGAVPYIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSD--- 330
             ++     ++   +E AD++LL+ +  +  +            K+  F  +  K D   
Sbjct: 65  SGIDAAMAGQSQTAIEEADIVLLMVDGRAGIQAGDEALVSYLRRKSKPFHLVINKIDGVG 124

Query: 331 ----LYSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLP 370
               L   Y    D  H I++    G+  ++  + S  S   + L 
Sbjct: 125 EEAALSDFYGFGIDGMHAIAASHNRGISSMMQSVLSDYSQGDESLE 170


>gi|289433056|ref|YP_003462929.1| ribosome-associated GTPase EngA [Dehalococcoides sp. GT]
 gi|288946776|gb|ADC74473.1| ribosome-associated GTPase EngA [Dehalococcoides sp. GT]
          Length = 442

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 17/126 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ ++G +N GKS+L N    ++ ++V++IPGTTRD +   LD +G  V + DTAGIR 
Sbjct: 181 VKLALVGRTNVGKSTLLNTFLGEERSVVSNIPGTTRDAIDTPLDFDGTNVLLIDTAGIRR 240

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-----------FIFI 325
              +    EK  + R    ++ AD++LL+ +    +E+   ++              I I
Sbjct: 241 RGKVESGVEKYSVLRALKAIDRADVVLLVMD---TEELVTAQDTHIAGYVRDTAKGIIII 297

Query: 326 GTKSDL 331
             K DL
Sbjct: 298 LNKWDL 303



 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N LA K++AI  D+PGTTRD L   +      + + DT G+  + 
Sbjct: 9   IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFATVSWLDRRLIMVDTGGLDPDI 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           + ++ ++   +  L ++ ADL+LL+ ++            +I        I +  K+D  
Sbjct: 69  ESVIGQQVNIQISLAIKEADLVLLVVDVKDGLITPDYEMADIIRRTGKPVILVANKADNL 128

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
               E  +           IS+F G G+ +L++++   L ++    P 
Sbjct: 129 KMGQEATEFYSLGFGEPAVISAFHGTGISDLMDRVLEELPDQPIATPE 176


>gi|54294416|ref|YP_126831.1| GTP-binding protein EngA [Legionella pneumophila str. Lens]
 gi|81822385|sp|Q5WWG8|DER_LEGPL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|53754248|emb|CAH15725.1| hypothetical protein lpl1485 [Legionella pneumophila str. Lens]
          Length = 462

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 102/285 (35%), Gaps = 38/285 (13%)

Query: 120 NGKIDLLEAESLADLISSET-----EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
             ++ L EA  +  L+   +     + Q   ++  ++ ++  +  +     T   +   A
Sbjct: 74  QSQVALNEANVILFLVDGRSGLTGIDQQIAQALRKLNKKVHLVVNK-----TDGINEDIA 128

Query: 175 DLDFSEEEDVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
             DF         +        I  L  +I                 KI   G  N GKS
Sbjct: 129 CADFQSLGITDIHAISASHGGGISSLLEEILEPFITEMHEATDDKAIKIAFAGRPNVGKS 188

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIK 290
           +L N +  ++  +V D+PGTTRD ++I    E     + DTAG+R     D+ +EK  + 
Sbjct: 189 TLINRILGEERVVVYDMPGTTRDSISIPFTREDKQYVLIDTAGVRRKSRIDEKIEKFSVI 248

Query: 291 RTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSD-LYSTYTEEY-- 339
           +T   ++ A + LLL + N   + ++++            +    K D L   + E+   
Sbjct: 249 KTLQAIKEAHVCLLLLDANEGITDQDMNLLGFIIESGKALVIAVNKWDGLEEEHKEKIKS 308

Query: 340 -------------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                           IS+  G G+  L   I     +  +    
Sbjct: 309 ELSRRLHFANFAKIRFISALHGSGVGGLFKDINEAYHSAIQSFST 353



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 66/164 (40%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D PG TRD        E     I DT GI   D
Sbjct: 5   IALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGIGVDD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             V+    K++ + +  A++IL L +  S          +     N     +  K+D  +
Sbjct: 65  IEVDTLMSKQSQVALNEANVILFLVDGRSGLTGIDQQIAQALRKLNKKVHLVVNKTDGIN 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKK 368
                 D         H IS+  G G+  L+ +I      +  +
Sbjct: 125 EDIACADFQSLGITDIHAISASHGGGISSLLEEILEPFITEMHE 168


>gi|327189207|gb|EGE56387.1| GTP-binding protein [Rhizobium etli CNPAF512]
          Length = 473

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
            D+   +     +T   ++ ADL L + +          +  E+   +    + +  KS+
Sbjct: 63  ADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
              + +  YD           IS+  G+G+ +L + I + +
Sbjct: 123 ARGSDSGFYDAYTLGLGEPTPISAEHGQGMIDLRDAIVAAI 163



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 91/261 (34%), Gaps = 44/261 (16%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212
            +  L    +  +   R++ + D+  ++  D+    ++    D   + +D          
Sbjct: 151 GMIDLRDAIVAAIGKDRAYAKEDIAVTDV-DIPPSENEADGEDEEPIYDD---------- 199

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
                   ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ 
Sbjct: 200 ----TKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMF 255

Query: 273 DTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNID 321
           DTAG+R    +    EK  +      +  A+ ++++ +     E        +   +   
Sbjct: 256 DTAGMRRKARVTEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLVLREGRA 315

Query: 322 FIFIGTKSD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
            +    K D                  L           IS  TG GL++L+  I     
Sbjct: 316 AVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGIRAVPISGQTGWGLDKLMQSIIDTDR 375

Query: 364 NKFKKLPFSIPSHKRHLYHLS 384
              K++  +  +       + 
Sbjct: 376 VWNKRISTARLNRWLETQQIQ 396


>gi|311694388|gb|ADP97261.1| GTP-binding protein EngA [marine bacterium HP15]
          Length = 452

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 27/181 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +I ++G  N GKS+L N +  +D  +V D+PGTTRD + I  + +G    + DTAG+R
Sbjct: 155 GIRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYERQGSQYTLIDTAGVR 214

Query: 279 ET---DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGT 327
                 ++VEK  I +T   +++A +++L+ +       +++             +    
Sbjct: 215 RRKNVSEVVEKFSIIKTLQAIDDAHVVILVIDAREGLVDQDLHLIGFVLDAGRSLVIAVN 274

Query: 328 KSD---------LYSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           K D         +        D       H IS+  G G+  +   +++   +   K P 
Sbjct: 275 KWDGMDPEDRARVKEQVQRRLDFLDYADKHYISALHGSGVGVMYESVQACYESAMAKWPT 334

Query: 372 S 372
           +
Sbjct: 335 N 335



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 13/122 (10%)

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           + +   A+V D PG TRD    +   EG    + DT G+   +  ++ E  +++   VE 
Sbjct: 1   MTRSRDALVADFPGLTRDRKYGEGSYEGQRFIVIDTGGLTGDEQGLDLEMARQSMQAVEE 60

Query: 299 ADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
           AD++L L +  +          +           +  K+D      ++ D   S F   G
Sbjct: 61  ADIVLFLVDGRAGLTAGDELIADSLRRSGKQAHLVVNKTD-----GQDPDIAASDFYSLG 115

Query: 351 LE 352
            E
Sbjct: 116 FE 117


>gi|332367384|gb|EGJ45117.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1059]
          Length = 436

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  K  ++G  N GKSSL NA+  ++  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPNEEVAENP-DMIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ 
Sbjct: 213 IDTVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       + +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              E +D           +SS  G G  ++++ I   L N+       + 
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVAENPDMI 175


>gi|15901543|ref|NP_346147.1| GTP-binding protein EngA [Streptococcus pneumoniae TIGR4]
 gi|15903596|ref|NP_359146.1| GTP-binding protein EngA [Streptococcus pneumoniae R6]
 gi|111657418|ref|ZP_01408170.1| hypothetical protein SpneT_02001366 [Streptococcus pneumoniae
           TIGR4]
 gi|116515879|ref|YP_816974.1| GTP-binding protein EngA [Streptococcus pneumoniae D39]
 gi|148989364|ref|ZP_01820732.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|148997762|ref|ZP_01825326.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|149011426|ref|ZP_01832673.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP19-BS75]
 gi|149020788|ref|ZP_01835317.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|168487543|ref|ZP_02712051.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1087-00]
 gi|168491409|ref|ZP_02715552.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC0288-04]
 gi|168493616|ref|ZP_02717759.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC3059-06]
 gi|168575101|ref|ZP_02721064.1| GTP-binding protein EngA [Streptococcus pneumoniae MLV-016]
 gi|169832823|ref|YP_001695085.1| GTP-binding protein EngA [Streptococcus pneumoniae Hungary19A-6]
 gi|182684651|ref|YP_001836398.1| GTP-binding protein EngA [Streptococcus pneumoniae CGSP14]
 gi|194398265|ref|YP_002038320.1| GTP-binding protein EngA [Streptococcus pneumoniae G54]
 gi|221232445|ref|YP_002511598.1| GTP-binding protein EngA [Streptococcus pneumoniae ATCC 700669]
 gi|225855139|ref|YP_002736651.1| GTP-binding protein EngA [Streptococcus pneumoniae JJA]
 gi|225857322|ref|YP_002738833.1| GTP-binding protein EngA [Streptococcus pneumoniae P1031]
 gi|225859462|ref|YP_002740972.1| GTP-binding protein EngA [Streptococcus pneumoniae 70585]
 gi|225861533|ref|YP_002743042.1| GTP-binding protein EngA [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649250|ref|ZP_04523502.1| GTP-binding protein EngA [Streptococcus pneumoniae CCRI 1974]
 gi|237822010|ref|ZP_04597855.1| GTP-binding protein EngA [Streptococcus pneumoniae CCRI 1974M2]
 gi|289167434|ref|YP_003445703.1| phosphoglycerate dehydrogenase-related protein, GTP-binding protein
           [Streptococcus mitis B6]
 gi|298229308|ref|ZP_06962989.1| GTP-binding protein EngA [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255748|ref|ZP_06979334.1| GTP-binding protein EngA [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503453|ref|YP_003725393.1| GTP-binding protein EngA [Streptococcus pneumoniae TCH8431/19A]
 gi|303254319|ref|ZP_07340427.1| GTP-binding protein EngA [Streptococcus pneumoniae BS455]
 gi|303258643|ref|ZP_07344623.1| GTP-binding protein EngA [Streptococcus pneumoniae SP-BS293]
 gi|303261806|ref|ZP_07347752.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS292]
 gi|303263670|ref|ZP_07349592.1| GTP-binding protein EngA [Streptococcus pneumoniae BS397]
 gi|303266846|ref|ZP_07352725.1| GTP-binding protein EngA [Streptococcus pneumoniae BS457]
 gi|303269910|ref|ZP_07355651.1| GTP-binding protein EngA [Streptococcus pneumoniae BS458]
 gi|307068334|ref|YP_003877300.1| putative GTPase [Streptococcus pneumoniae AP200]
 gi|307705427|ref|ZP_07642284.1| small GTP-binding domain protein [Streptococcus mitis SK597]
 gi|307707485|ref|ZP_07643967.1| GTP-binding protein EngA [Streptococcus mitis NCTC 12261]
 gi|307709642|ref|ZP_07646094.1| small GTP-binding domain protein [Streptococcus mitis SK564]
 gi|322377454|ref|ZP_08051945.1| ribosome-associated GTPase EngA [Streptococcus sp. M334]
 gi|54037053|sp|P64063|DER_STRR6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|54040976|sp|P64062|DER_STRPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|122278180|sp|Q04J64|DER_STRP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238688353|sp|B1I766|DER_STRPI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238690849|sp|B5E756|DER_STRP4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238691183|sp|B2IRW4|DER_STRPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783168|sp|C1C8U6|DER_STRP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783169|sp|B8ZMH4|DER_STRPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783171|sp|C1CFT0|DER_STRZJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783172|sp|C1CM45|DER_STRZP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783173|sp|C1CSX0|DER_STRZT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|14973204|gb|AAK75787.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae TIGR4]
 gi|15459218|gb|AAL00357.1| Phosphoglycerate dehydrogenase [Streptococcus pneumoniae R6]
 gi|116076455|gb|ABJ54175.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae D39]
 gi|147756261|gb|EDK63303.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|147764416|gb|EDK71347.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP19-BS75]
 gi|147925114|gb|EDK76194.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|147930429|gb|EDK81412.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|168995325|gb|ACA35937.1| GTP-binding protein EngA [Streptococcus pneumoniae Hungary19A-6]
 gi|182629985|gb|ACB90933.1| GTP-binding protein EngA [Streptococcus pneumoniae CGSP14]
 gi|183569654|gb|EDT90182.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1087-00]
 gi|183574158|gb|EDT94686.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC0288-04]
 gi|183576280|gb|EDT96808.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC3059-06]
 gi|183578800|gb|EDT99328.1| GTP-binding protein EngA [Streptococcus pneumoniae MLV-016]
 gi|194357932|gb|ACF56380.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae G54]
 gi|220674906|emb|CAR69481.1| GTP-binding protein EngA [Streptococcus pneumoniae ATCC 700669]
 gi|225721482|gb|ACO17336.1| GTP-binding protein EngA [Streptococcus pneumoniae 70585]
 gi|225723540|gb|ACO19393.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae JJA]
 gi|225724777|gb|ACO20629.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae P1031]
 gi|225727275|gb|ACO23126.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|288907001|emb|CBJ21835.1| phosphoglycerate dehydrogenase-related protein, GTP-binding protein
           [Streptococcus mitis B6]
 gi|298239048|gb|ADI70179.1| GTP-binding protein EngA [Streptococcus pneumoniae TCH8431/19A]
 gi|301794686|emb|CBW37137.1| GTP-binding protein EngA [Streptococcus pneumoniae INV104]
 gi|301802409|emb|CBW35163.1| GTP-binding protein EngA [Streptococcus pneumoniae INV200]
 gi|302598670|gb|EFL65708.1| GTP-binding protein EngA [Streptococcus pneumoniae BS455]
 gi|302636889|gb|EFL67378.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS292]
 gi|302640144|gb|EFL70599.1| GTP-binding protein EngA [Streptococcus pneumoniae SP-BS293]
 gi|302640564|gb|EFL70970.1| GTP-binding protein EngA [Streptococcus pneumoniae BS458]
 gi|302643614|gb|EFL73882.1| GTP-binding protein EngA [Streptococcus pneumoniae BS457]
 gi|302646708|gb|EFL76933.1| GTP-binding protein EngA [Streptococcus pneumoniae BS397]
 gi|306409871|gb|ADM85298.1| Predicted GTPase [Streptococcus pneumoniae AP200]
 gi|307616437|gb|EFN95628.1| GTP-binding protein EngA [Streptococcus mitis NCTC 12261]
 gi|307619540|gb|EFN98664.1| small GTP-binding domain protein [Streptococcus mitis SK564]
 gi|307621026|gb|EFO00106.1| small GTP-binding domain protein [Streptococcus mitis SK597]
 gi|321281654|gb|EFX58663.1| ribosome-associated GTPase EngA [Streptococcus sp. M334]
 gi|327389894|gb|EGE88239.1| GTP-binding protein engA [Streptococcus pneumoniae GA04375]
 gi|332074047|gb|EGI84525.1| GTP-binding protein engA [Streptococcus pneumoniae GA41301]
 gi|332199734|gb|EGJ13809.1| GTP-binding protein engA [Streptococcus pneumoniae GA41317]
 gi|332200267|gb|EGJ14340.1| GTP-binding protein engA [Streptococcus pneumoniae GA47368]
          Length = 436

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPN-EYEEENPDVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D +G    + DTAG+R++  +    EK  + R    ++ +D++L++  IN+++ 
Sbjct: 213 IDTHFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                              +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPEMIKQISESQNTRIPSAVLN 360



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      I    E    K    +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           ISS  G G  ++++ I   L N++++    + 
Sbjct: 126 MRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLPNEYEEENPDVI 175


>gi|325687138|gb|EGD29161.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK72]
          Length = 436

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  K  ++G  N GKSSL NA+  ++  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPNEEVAENP-DMIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ 
Sbjct: 213 IDTVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       + +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGIVIVVNKWDTLDKDNHTMKDWEEDIRDQFQYLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              E +D           +SS  G G  ++++ I   L N+       + 
Sbjct: 126 MRNEIFDFYALGLGDPLPVSSVHGIGTGDVLDAIVENLPNEEVAENPDMI 175


>gi|227551166|ref|ZP_03981215.1| GTP-binding protein EngA [Enterococcus faecium TX1330]
 gi|257896210|ref|ZP_05675863.1| GTP-binding protein engA [Enterococcus faecium Com12]
 gi|293379548|ref|ZP_06625690.1| ribosome-associated GTPase EngA [Enterococcus faecium PC4.1]
 gi|293570249|ref|ZP_06681318.1| GTP-binding protein EngA [Enterococcus faecium E980]
 gi|227179728|gb|EEI60700.1| GTP-binding protein EngA [Enterococcus faecium TX1330]
 gi|257832775|gb|EEV59196.1| GTP-binding protein engA [Enterococcus faecium Com12]
 gi|291609656|gb|EFF38917.1| GTP-binding protein EngA [Enterococcus faecium E980]
 gi|292641857|gb|EFF60025.1| ribosome-associated GTPase EngA [Enterococcus faecium PC4.1]
          Length = 436

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
            K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      E G    + DTAG+R
Sbjct: 175 IKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           +   +    EK  + R    ++ +D++L++  +N+++ I          +       I +
Sbjct: 235 KRGKVYENTEKYSVMRAMRAIDRSDIVLMV--LNAEEGIREQDKRVAGYAHEAGRGVIIV 292

Query: 326 GTKSDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K DL    T                        +S+ T + LE L   I+ +  N+  
Sbjct: 293 VNKWDLVKKETNTMRDFEQEIRDEFRYLDYAPIVFVSAVTKQRLERLPEMIEQVSMNQNL 352

Query: 368 KLPFSIPS 375
           ++  ++ +
Sbjct: 353 RISSAVLN 360



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + +E AD+I+ +               +I +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIEEADVIICVVSGREGVTDADEMVAKILYRSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
              + Y+           +S   G G+ +++++     
Sbjct: 126 MRNDIYEFYSLGLGDPYPVSGSHGLGIGDILDEAVKYF 163


>gi|116511562|ref|YP_808778.1| GTP-binding protein EngA [Lactococcus lactis subsp. cremoris SK11]
 gi|125624594|ref|YP_001033077.1| GTP-binding protein EngA [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|123320527|sp|Q030L6|DER_LACLS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166198724|sp|A2RM49|DER_LACLM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|116107216|gb|ABJ72356.1| Predicted GTPase [Lactococcus lactis subsp. cremoris SK11]
 gi|124493402|emb|CAL98376.1| putative phosphoglycerate dehydrogenase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071385|gb|ADJ60785.1| GTP-binding protein EngA [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 436

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV DIPG TRD +    +       I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDIPGVTRDRIYATGEWLTRKFNIIDTGGIELSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYS 333
           +    E   +  + +  AD+I+ + +          +   I +  +   I I  K D   
Sbjct: 66  EPFMTEIRAQAEIAMTEADVIIAVVDGETGITDADEAVANILYRTDKPVILIVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              E +D           +S+  G G  ++++ I   L N+ ++    + 
Sbjct: 126 RRMEIFDFYSLGLGDPYPVSAVHGIGTGDVLDAIVQNLPNEIEEENEDVI 175



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  K  ++G  N GKSSL NA+  +D  I + I GTTRD 
Sbjct: 154 DVLDAIVQNLPN-EIEEENEDVIKFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDA 212

Query: 258 LTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +    +D E     + DTAG+R++  I    EK  + R    ++ +D++L++  IN+++ 
Sbjct: 213 IDTHFVDSEDQEFVMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDIVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISS 345
           I          +       + +  K D      +                       +S+
Sbjct: 271 IREYDMRIAGFAHEAGKGILIVVNKWDTLEKDNDTMKKFELEIRTKFKFLDYAPIVYVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            TG+ L +L + IK I   +  ++  S+ +
Sbjct: 331 KTGQRLNKLPDMIKEIHHAQNLRISSSVLN 360


>gi|85860147|ref|YP_462349.1| GTP-binding protein EngA [Syntrophus aciditrophicus SB]
 gi|85723238|gb|ABC78181.1| GTP-binding protein [Syntrophus aciditrophicus SB]
          Length = 447

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 11/128 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  +I ++G  N GKSSL N +   +  I    PGTTRD +    + +G+   + DTAGI
Sbjct: 180 DRIRIALIGKPNVGKSSLLNKILGYERTIANPTPGTTRDAIDTPFEFDGHRYLLIDTAGI 239

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
           R+   I    EK  + +    ++  D+ LLL +              ++F K    I + 
Sbjct: 240 RKKSRISLSLEKYSVIQALKTLDRCDIALLLIDAEEGITDQDTKIAGLAFEKGRAVIIVV 299

Query: 327 TKSDLYST 334
            K DL + 
Sbjct: 300 NKWDLVAK 307



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 18/180 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L++K  AIV D+PG TRD    D    G    + DT G     
Sbjct: 7   VAIVGRPNVGKSTLFNRLSQKSKAIVIDVPGATRDRNYADCTWHGRRYTLIDTGGFEPAS 66

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD-- 330
            + +  +  ++T L +E AD+I+ L +             ++         +   K D  
Sbjct: 67  TETILIQMREQTHLAIEEADIIIFLMDGRDGLTPADIEIVQLLREGGKKVFYAVNKVDGP 126

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
            +     E+        H IS+  G G++EL+  + + L  +            R    L
Sbjct: 127 RHEGLLPEFYRLGVSRIHDISAQHGLGIDELMEDLSACLPEEAASAGEEGEEEDRIRIAL 186


>gi|307707079|ref|ZP_07643876.1| small GTP-binding domain protein [Streptococcus mitis SK321]
 gi|307617605|gb|EFN96775.1| small GTP-binding domain protein [Streptococcus mitis SK321]
          Length = 436

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPN-EYEEENPDVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D +G    + DTAG+R++  +    EK  + R    ++ +D++L++  IN+++ 
Sbjct: 213 IDTHFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                              +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKSWEEDIREQFQYLPYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPEMIKQISESQNTRIPSAVLN 360



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      I    E    K    +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           ISS  G G  ++++ I   L N++++    + 
Sbjct: 126 MRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLPNEYEEENPDVI 175


>gi|317056789|ref|YP_004105256.1| ribosome-associated GTPase EngA [Ruminococcus albus 7]
 gi|315449058|gb|ADU22622.1| ribosome-associated GTPase EngA [Ruminococcus albus 7]
          Length = 443

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 29/191 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++  ++   +  E      K+ ++G  N GKSSL N +  ++  IV+DI GTTRD 
Sbjct: 156 DMLDEVLKYLPDVEEDEDDEEAVKVAVIGKPNVGKSSLINRICGEERVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEI------ 308
              D++ E       DTAGIR    +   VEK  + R ++ V+ AD+ +++ +       
Sbjct: 216 TDTDIENEFGKFVFIDTAGIRRKSKVLESVEKYSVLRAYMAVDRADVAVIVIDATVGFTE 275

Query: 309 --NSKKEISFPKNIDFIFIGTKSDLYST---------YTEEYDH---------LISSFTG 348
             +     +  K    +    K D                E D           +S+ TG
Sbjct: 276 QDSKVAGYAHEKGKACVVAVNKWDALEKDGKTMNEFRKKLENDFSFMSYVPFVFVSAKTG 335

Query: 349 EGLEELINKIK 359
             +++L   I+
Sbjct: 336 LRIDKLFEMIR 346



 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 19/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + ++IV D PG TRD +    +  G    + DT GI  E+
Sbjct: 6   VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYGKCEWLGREFMLVDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +DI+  +  +++ L + +A++I+L+ +I S          ++        +    K D  
Sbjct: 66  NDIILSQMRRQSELAITSANVIILVTDIKSGVTSTDMEVAQMLLKSGKPVVLCVNKVDNV 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSN 364
                E              +SS  G G  ++++++   L +
Sbjct: 126 GEPPMELYEFYNLGLGEPFPVSSVHGHGTGDMLDEVLKYLPD 167


>gi|257887716|ref|ZP_05667369.1| GTP-binding protein engA [Enterococcus faecium 1,141,733]
 gi|257823770|gb|EEV50702.1| GTP-binding protein engA [Enterococcus faecium 1,141,733]
          Length = 436

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
            K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      E G    + DTAG+R
Sbjct: 175 IKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           +   +    EK  + R    ++ +D++L++  +N+++ I          +       I +
Sbjct: 235 KRGKVYENTEKYSVMRAMRAIDRSDIVLMV--LNAEEGIREQDKRVAGYAHEAGRGVIIV 292

Query: 326 GTKSDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K DL    T                        +S+ T + LE L   I+ +  N+  
Sbjct: 293 VNKWDLVKKETNTMRDFEQEIRDEFRYLDYAPIVFVSAVTKQRLERLPEMIEQVSMNQNL 352

Query: 368 KLPFSIPS 375
           ++  ++ +
Sbjct: 353 RISSAVLN 360



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + +E AD+I+ +               +I +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIEEADVIICVVSGREGVTDADEMVAKILYRSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
              + Y+           +S   G G+ +++++     
Sbjct: 126 MRNDIYEFYSLGLGDPYPVSGSHGLGIGDILDEAVKYF 163


>gi|319406081|emb|CBI79711.1| GTP-binding protein [Bartonella sp. AR 15-3]
          Length = 477

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS+LFN L  + +A+V D PG TRD        +     + DTAG+ +
Sbjct: 3   LTIAIVGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRRIHSAKFQDLHFNVIDTAGLEK 62

Query: 280 TDD-IVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
           +D+  +E     +T + +  ADLIL + +  S           +        + +  KS+
Sbjct: 63  SDNHTLEGRMRSQTKIAIAEADLILFVLDAKSGITPSDLDFSSLIRKSGKPIVLVANKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             +    EY+           IS+  G+GL +L + I + +
Sbjct: 123 SKAAIGGEYEAWSLGLGEPCLISAEHGQGLSDLRDAIVAAI 163



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 33/243 (13%)

Query: 159 GQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN 218
               D    I + I  D  F+   + +   +   ++ I     DI+   S     + IR 
Sbjct: 150 QGLSDLRDAIVAAIGTDKIFNLRREKEKVYTAAQVSSIKDNVGDIAEEDSVYDEKKTIR- 208

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
              I I+G  N GKS+L N++  +D  +     G TRD +++D +     +K+ DTAG+R
Sbjct: 209 ---IAIVGRPNTGKSTLINSMLGQDRLLTGSEAGITRDSVSVDWEWNNRRIKLFDTAGLR 265

Query: 279 ETDDIVEK---EGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGT 327
               + EK     +  +   +  A++++++ +  +  E        +   +    I    
Sbjct: 266 RKSKVQEKLERLSVMDSLRAIRFAEVVVIVFDATASFEKQDLQIADLVIREGRVPIIAFN 325

Query: 328 KSDLYSTYTEEYDHLISSFT------------------GEGLEELINKIKSILSNKFKKL 369
           K DL   + E    L    T                  G+G+ +L+  I  I     +++
Sbjct: 326 KWDLIENHHETLTTLYEKCTRLLPQVRGLRAIPLSGQYGQGINKLMENITMIHRVWNRRI 385

Query: 370 PFS 372
              
Sbjct: 386 STG 388


>gi|282890013|ref|ZP_06298547.1| hypothetical protein pah_c009o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500105|gb|EFB42390.1| hypothetical protein pah_c009o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 493

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 98/257 (38%), Gaps = 42/257 (16%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN----DISSHIS 208
            L     Q + + +         +D   +E +        + + + +       I+  + 
Sbjct: 105 ALDHEVAQILLRTSKPLCLAVNKIDHPSQEHLIYEFQSLGITNKVAVSATQSWRIAELLE 164

Query: 209 QG------KLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
                   ++GE   +    I I+G  N GKSSL N L  +   IV+ IPGTTRD + + 
Sbjct: 165 AALDPLSLEIGEEETDKPLAIAIIGRPNVGKSSLINYLLDEQRCIVSPIPGTTRDSVDVS 224

Query: 262 LDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
                +   + DTAGIR      E   K    RT   +  AD+ LL+ +  S++ I+  +
Sbjct: 225 FTHNEHAYTLIDTAGIRRKHSEHEVVDKFAAIRTERAIARADICLLVLD--SQQGITVQE 282

Query: 319 NIDFIFIG----------TKSDLYSTYTEEY----------------DHLISSFTGEGLE 352
                 I            K DL   +  E+                   +S+ TG  +E
Sbjct: 283 KRIANLIEEAGKGCILLFNKWDLVKGFRMEHCLKEIESEASFLNHCPKIFMSAKTGRNVE 342

Query: 353 ELINKIKSILSNKFKKL 369
           ++  +I+++  N  K++
Sbjct: 343 KIFEEIQTVHENSQKRI 359



 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 18/170 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKS+LFN +  K +AIV +  G TRD L  + DL G   ++ DT GI   
Sbjct: 11  KLALVGRPNVGKSALFNKICGKKIAIVDEAEGVTRDRLYAEADLFGRHFQVIDTGGINPR 70

Query: 281 DDIVEKEGIKR-TFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDL 331
            D    E +KR   + +E AD I+++ +         +   +I    +        K D 
Sbjct: 71  SDAPFNEEVKRQAEIAIEEADTIVMVVDSHVGLTALDHEVAQILLRTSKPLCLAVNKIDH 130

Query: 332 YSTYTEEYDHLISSFTG---------EGLEELINKIKSILSNKFKKLPFS 372
            S     Y+      T            + EL+      LS +  +    
Sbjct: 131 PSQEHLIYEFQSLGITNKVAVSATQSWRIAELLEAALDPLSLEIGEEETD 180


>gi|241205814|ref|YP_002976910.1| GTP-binding protein EngA [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859704|gb|ACS57371.1| small GTP-binding protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 474

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 18/164 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
            D    +     +T   ++ ADL L + +             E+   +    + +  KS+
Sbjct: 63  ADAESLQGRMRAQTEAAIDEADLSLFVVDAKSGLTPVDTDLAEMLRRRGKPVVLVANKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
              + +  YD           IS+  G+G+ +L + I + +   
Sbjct: 123 ARGSDSGFYDAYTLGLGEPTPISAEHGQGMLDLRDAIVAAIGED 166



 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 87/255 (34%), Gaps = 36/255 (14%)

Query: 159 GQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN 218
              +D    I + I  D  +  +EDV          +      D      + K       
Sbjct: 150 QGMLDLRDAIVAAIGEDRAYPTKEDVAVTDVDIPQTEGEDSDADEEPAYDETK------- 202

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R
Sbjct: 203 PLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMR 262

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGT 327
               ++   EK  +      +  A+ ++++ +     E        +   +    +    
Sbjct: 263 RKARVIEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLVLREGRAAVLAFN 322

Query: 328 KSD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           K D                  L           IS  TG GL++L+  I        K++
Sbjct: 323 KWDMIEDRQAVLADLREKTDRLLPQARGIRAVPISGQTGWGLDKLMQAIIDTDKVWNKRI 382

Query: 370 PFSIPSHKRHLYHLS 384
             +  +       + 
Sbjct: 383 STARLNRWLETQQIQ 397


>gi|328955502|ref|YP_004372835.1| ribosome-associated GTPase EngA [Coriobacterium glomerans PW2]
 gi|328455826|gb|AEB07020.1| ribosome-associated GTPase EngA [Coriobacterium glomerans PW2]
          Length = 445

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 12/145 (8%)

Query: 198 FLKNDISSHISQGKLG-EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L +++ + +   +   +   +   + I+G  NAGKSSLFN +   + +IV+D+ GTTRD
Sbjct: 156 DLLDEVVALLPDEEREVDPFPDALGVAIIGRPNAGKSSLFNKMIGSERSIVSDVAGTTRD 215

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---- 309
            +   +  +  L ++ DTAGIR+  ++    E   + R    ++ AD+ LL+ + +    
Sbjct: 216 AIDTIVRRDARLYRMVDTAGIRKKSNVYENVEYYSMVRGLRAIDRADVALLVVDSSIGVT 275

Query: 310 ----SKKEISFPKNIDFIFIGTKSD 330
                   ++  +    + +  K D
Sbjct: 276 EQDQKVAALAIDRGCAVVVLLNKWD 300



 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 20/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + ++G  N GKS+L N LA+   AIV +  G TRD    D D  G    I DT GI   +
Sbjct: 5   VAVVGRPNVGKSTLVNRLAQTSEAIVHETRGVTRDRSYHDADWAGREFTIVDTGGIESLK 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDL 331
           ++D+       +     E A +IL++ +    +  + E    +    +     +  K D 
Sbjct: 65  SEDVFSGSIRDQALAAAEEAAVILMVVDGRTGVTEEDETVARLLRRVDKPVFLLVNKLDN 124

Query: 332 YSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                E               IS+  G G  +L++++ ++L ++ +++ 
Sbjct: 125 PDREGERLWEYSSLGIGDPLPISALHGHGTGDLLDEVVALLPDEEREVD 173


>gi|323350996|ref|ZP_08086653.1| ribosome-associated GTPase EngA [Streptococcus sanguinis VMC66]
 gi|322122720|gb|EFX94429.1| ribosome-associated GTPase EngA [Streptococcus sanguinis VMC66]
          Length = 436

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  K  ++G  N GKSSL NA+  ++  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPNEEVAENP-DMIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ 
Sbjct: 213 IDTVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       + +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              E +D           +SS  G G  ++++ I   L N+       + 
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVAENPDMI 175


>gi|332358244|gb|EGJ36072.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK355]
          Length = 436

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 89/207 (42%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + +      E++ N    K  ++G  N GKSSL NA+  +D  I + + GTTRD +  
Sbjct: 156 LDAIVENLPNEEVVENPDMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
              D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ I  
Sbjct: 216 VFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       + +  K D                       +      +S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + IK I  ++  ++P ++ +
Sbjct: 334 QRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
              E +D           +SS  G G  ++++ I   L N+
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNE 166


>gi|328946827|gb|EGG40964.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1087]
          Length = 436

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPNEEVAENP-DMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ 
Sbjct: 213 IDTVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              E +D           +SS  G G  ++++ I   L N+       + 
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVAENPDMI 175


>gi|291546330|emb|CBL19438.1| ribosome-associated GTPase EngA [Ruminococcus sp. SR1/5]
          Length = 441

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 76/168 (45%), Gaps = 19/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA  +++IV D PG TRD +  D+        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGDNISIVKDTPGVTRDRIYADVTWLDRTFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+     ++  + ++ AD+I+ + ++            ++          +  K D +
Sbjct: 66  SDIILSRMREQAQIAIDTADVIIFITDVRQGLVDSDAKVADMLRRSGKPVRLVVNKVDSH 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
             Y  +              IS+   +GL ++++++     +K ++  
Sbjct: 126 QKYMMDVYEFYNLGIGEPIPISAANRQGLGDMLDEVIKEFPDKSEEED 173



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 34/223 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + +++          E   +  KI I+G  N GKSSL N L  ++  IV++I GTTRD 
Sbjct: 156 DMLDEVIKEFPDKSEEEDQDDIPKIAIVGKPNVGKSSLINKLLGEERVIVSNIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +          DTAG+R      + +E+  + RT   VE AD+++++ + +     
Sbjct: 216 IDTKVTWNKKDYIFIDTAGLRRKGKVKEEIERYSVIRTVTAVERADVVVVVIDASEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSD------------------LYSTYTEEYDHLISSFTG 348
                  I+  +    I    K D                  + S         IS+ TG
Sbjct: 276 QDAKIAGIAHDRGKGIIVAVNKWDAIEKNDKTIYKHTEKIRQILSFMPYAQIIFISAKTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
           + L +L   I +++ N+  ++   + +       LS+ V   +
Sbjct: 336 QRLPKLFENIDTVIENQTLRIQTGVLN-----EILSEAVALQQ 373


>gi|227431693|ref|ZP_03913723.1| GTP-binding protein EngA [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352517|gb|EEJ42713.1| GTP-binding protein EngA [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 436

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 31/202 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++I  H    +  E   +  +  I+G  N GKSS+ NA+  +   IV+DI GTTRD 
Sbjct: 154 DLLDEIVKHFPD-EAAEQEDDAIRFSIIGRPNVGKSSIVNAMLGEKRVIVSDIEGTTRDA 212

Query: 258 LTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK-- 311
           +    +  EG    + DTAG+R+   I    EK  + R    ++++++IL++ +  +   
Sbjct: 213 IDTRFVTEEGDEFVMVDTAGMRKRGKIYENTEKYSVMRAMKAIDDSNVILMVIDAEAGIR 272

Query: 312 ------KEISFPKNIDFIFIGTKSDLYST-----------YTEEYDH-------LISSFT 347
                    +       I +  K D                 EE+          +S+ T
Sbjct: 273 EQDKHVAGFAHEAGRAMIIVVNKWDAIEKNDRTMSDFENLIREEFKFLDYAPIVFVSAKT 332

Query: 348 GEGLEELINKIKSILSNKFKKL 369
           G+ L+ L   +K +  N  K++
Sbjct: 333 GQRLDRLPQMVKDVDDNHRKRI 354



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + +AIV D+PG TRD L    +   Y  ++ DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRMAGERIAIVEDMPGVTRDRLYAPAEWLNYEFRMIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
                E   +  L +  AD+I+++                + +  +   +    K D   
Sbjct: 66  APFLAEIRGQVELAINEADVIVMVVSGREGLTEADEVVARMLYKSDKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +S   G GL +L+++I     ++  +      
Sbjct: 126 MRHDVYDFYALGLGDPFPVSGSHGLGLGDLLDEIVKHFPDEAAEQEDDAI 175


>gi|254514003|ref|ZP_05126064.1| GTP-binding protein EngA [gamma proteobacterium NOR5-3]
 gi|219676246|gb|EED32611.1| GTP-binding protein EngA [gamma proteobacterium NOR5-3]
          Length = 474

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 108/292 (36%), Gaps = 43/292 (14%)

Query: 123 IDLLEAESLADLIS-SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           ID   AE     I  ++  +    + +G++     L      K       +   +D  + 
Sbjct: 67  IDAAMAEQSLLAIDEADVVLLLVDAKDGLNPVDVQLVQYLRQKSRDFH-LVVNKIDGRDP 125

Query: 182 EDVQNFSSKEVLNDILFL--------KNDISSHISQGKLGEIIRN------GYKIVILGH 227
           +   +      +  +  +        +  I + +    + E   +      G ++ ++G 
Sbjct: 126 DVAISDFHSLGIASMHAIAASHGRGVRQMIETVLESVPIPEADDDAQEEQGGTRVAVVGR 185

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV--- 284
            N GKS+L N +  +D  +V D PGTTRD + I+   EG    + DTAG+R   ++    
Sbjct: 186 PNVGKSTLVNRILGEDRVVVYDQPGTTRDSVYINFSREGRPYTLIDTAGVRRRKNVREAV 245

Query: 285 EKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNI-----DFIFIGTKS-----DL 331
           EK  I +T   + +A++++LL +       +++    N        +    K      D 
Sbjct: 246 EKFSIIKTLSAISDANVVVLLVDGQEGLVDQDLHLLGNCLEAGRALVLAVNKWDGLDPDQ 305

Query: 332 YSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 E D           H IS+  G G+  L   I +  +   + +  S
Sbjct: 306 KDAIRSELDRRLRFVDFADMHFISALHGSGVGTLFGSIDAAYTAAMQPMGTS 357



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 13/138 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V ++ G TRD    +   E     + DT G+   +
Sbjct: 5   IALVGRPNVGKSTLFNQLTRSRDALVANLSGLTRDRKYGEGRSEDRAFIVIDTGGVSGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
           + ++    +++ L ++ AD++LLL +             +    K+ DF  +  K D   
Sbjct: 65  EGIDAAMAEQSLLAIDEADVVLLLVDAKDGLNPVDVQLVQYLRQKSRDFHLVVNKID--- 121

Query: 334 TYTEEYDHLISSFTGEGL 351
               + D  IS F   G+
Sbjct: 122 --GRDPDVAISDFHSLGI 137


>gi|107029013|ref|YP_626108.1| GTP-binding protein EngA [Burkholderia cenocepacia AU 1054]
 gi|116689829|ref|YP_835452.1| GTP-binding protein EngA [Burkholderia cenocepacia HI2424]
 gi|170733168|ref|YP_001765115.1| GTP-binding protein EngA [Burkholderia cenocepacia MC0-3]
 gi|123370031|sp|Q1BGX0|DER_BURCA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166224312|sp|A0K7T2|DER_BURCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238688579|sp|B1JT88|DER_BURCC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|105898177|gb|ABF81135.1| Small GTP-binding protein domain protein [Burkholderia cenocepacia
           AU 1054]
 gi|116647918|gb|ABK08559.1| small GTP-binding protein [Burkholderia cenocepacia HI2424]
 gi|169816410|gb|ACA90993.1| small GTP-binding protein [Burkholderia cenocepacia MC0-3]
          Length = 445

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--AQQDISDQDAHIAGFVVEQGRALVIG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  +                  H IS+    G+  L+  +    +    KL
Sbjct: 297 VNKWDGLDDHARDRAKADLTRKLKFLDFAKSHFISAAKKTGIGALMRSVDDAYAAAMAKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +          S  +           +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                  D           IS+  G+G+ ++IN+   +      + 
Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDMINEALEVAYAGQPEE 170


>gi|332992293|gb|AEF02348.1| GTP-binding protein Der [Alteromonas sp. SN2]
          Length = 481

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 89/194 (45%), Gaps = 27/194 (13%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           ++ +L  +     K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +  
Sbjct: 182 AEEQLKRLQEQPIKLAIVGKPNVGKSTLTNRILGEERVVVFDLPGTTRDSVFIPMERDER 241

Query: 268 LVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP---- 317
              + DTAG+R+    ++ VEK  I +T   ++ A+++L++ +     + +++S      
Sbjct: 242 EYILIDTAGVRKRRKVNEAVEKFSIVKTLQAIDEANVVLMIIDAREGITDQDLSLLGFVL 301

Query: 318 -KNIDFIFIGTKS-----DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKS 360
                 +    K      D+ +    E D           H IS+  G G+  L   ++ 
Sbjct: 302 NSGRSLVIAVNKWDGLSTDIKNDIKRELDRRLGFIDFARLHFISAMHGTGVGNLFESVQE 361

Query: 361 ILSNKFKKLPFSIP 374
              +  K++  S+ 
Sbjct: 362 AYLSATKRINTSML 375



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 17/188 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L     A+V D PG TRD        E     + DT GI   +
Sbjct: 5   VALVGRPNVGKSTLFNRLTNTRDALVADYPGLTRDRKYGQAKFEQRQFIVVDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYS 333
           + ++ E  +++ L +E AD++LLL +       + + I+      N     +  K D   
Sbjct: 65  EGIDAEMAQQSLLAIEEADVVLLLVDARAGLLPADQGIADHIRRLNKKVFVVANKVDGID 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
             +E  D           I++  G G+ +L+      L   F  +       +  +    
Sbjct: 125 GDSESADFYALGLGTVKQIAAAHGRGVSQLLQDALVPLEASFPDMRIVEEVQEEEIDAEE 184

Query: 385 QTVRYLEM 392
           Q  R  E 
Sbjct: 185 QLKRLQEQ 192


>gi|148984151|ref|ZP_01817446.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|147923440|gb|EDK74553.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|301800517|emb|CBW33156.1| GTP-binding protein EngA [Streptococcus pneumoniae OXC141]
          Length = 436

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPN-EYEEENPDVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D +G    + DTAG+R++  +    EK  + R    ++ +D++L++  IN+++ 
Sbjct: 213 IDTHFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                              +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPEMIKQISESQNTRIPSAVLN 360



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      I    E    K    +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           ISS  G G  ++++ I   L N++++    + 
Sbjct: 126 MRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLPNEYEEENPDVI 175


>gi|332201131|gb|EGJ15202.1| GTP-binding protein engA [Streptococcus pneumoniae GA47901]
          Length = 436

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPN-EYEEENPDVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D +G    + DTAG+R++  +    EK  + R    ++ +D++L++  IN+++ 
Sbjct: 213 IDTHFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                              +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPEMIKQISESQNTRIPSAVLN 360



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      I    E    K    +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           ISS  G G  ++++ I   L N++++    + 
Sbjct: 126 MRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLPNEYEEENPDVI 175


>gi|327462002|gb|EGF08331.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1057]
          Length = 436

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPNEEVAENP-DMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ 
Sbjct: 213 IDTVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              E +D           +SS  G G  ++++ I   L N+       + 
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVAENPDMI 175


>gi|161485612|ref|YP_386558.2| GTP-binding protein EngA [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 455

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 28/196 (14%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
                 E  R   K+ +LG  NAGKSSL NAL+     IV+D+ GTTRD + I ++L G 
Sbjct: 178 EDAPQEEEER-PLKLAMLGRPNAGKSSLVNALSGSRRMIVSDVAGTTRDSVDIAVELGGR 236

Query: 268 LVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISF-- 316
                DTAG+R   +  D VE+  +  +      AD+ L++ +         K+ I    
Sbjct: 237 RYVFVDTAGVRRRAKIQDPVERYSVNSSLKSTTKADVTLVVLDAVEGLTQQDKRLIDLLD 296

Query: 317 PKNIDFIFIGTKSDLYST---------YTEEYDHL-------ISSFTGEGLEELINKIKS 360
            +   F+ +  K DL            Y +            IS+ +G G+++L+   + 
Sbjct: 297 ERKTPFMLVINKIDLVPRDGLTALKRLYDDALTFCKHVPIMYISARSGRGVDKLLPMARK 356

Query: 361 ILSNKFKKLPFSIPSH 376
           I    + ++   + + 
Sbjct: 357 INKECYVRVGTGLLNR 372



 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 23/131 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS+LFN L + + AI  D PG TRD +   + +      I DT GI   
Sbjct: 4   KIALIGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGYVKVGDRKFIIIDTGGITLD 63

Query: 281 DDI-----------VEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKN 319
           +              E E +++T   +  AD + L   ++ ++ ++              
Sbjct: 64  EHAAVAEGPDELRGFEAEILRQTEEAI--ADSVALCLVVDGREGLTPFDESLAAYVRKSG 121

Query: 320 IDFIFIGTKSD 330
              +    K D
Sbjct: 122 KPVLLAVNKVD 132


>gi|116071134|ref|ZP_01468403.1| GTP-binding protein EngA [Synechococcus sp. BL107]
 gi|116066539|gb|EAU72296.1| GTP-binding protein EngA [Synechococcus sp. BL107]
          Length = 455

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 11/149 (7%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             + + + + +             ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD
Sbjct: 155 AEVLDKVLTFLPPKDQEGDEEEPIQMSIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRD 214

Query: 257 VLTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI----- 308
            +  ++  E    ++ DTAGI   R  +   E  GI R+F  +E +D+ +L+ +      
Sbjct: 215 TIDTNIVRENRPWRLVDTAGIRRRRSVNYGPEYFGINRSFKAIERSDVCVLVIDALDGVT 274

Query: 309 --NSKKEISFPKNIDFI-FIGTKSDLYST 334
             + +      ++      +  K D    
Sbjct: 275 EQDQRLAGRIEEDGRACVVVVNKWDAVEK 303



 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           D     E  ++  L ++ A + L++ +          S  E    +    +    K +  
Sbjct: 66  DSEFLPEIREQAALALDEASVALVIVDGKQGLTAADESIAEFLRQQRCPTLLAVNKCESV 125

Query: 333 ST----------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                             + IS+  G G  E+++K+ + L  K ++   
Sbjct: 126 EQGLAMAAEFWSLGLGEPYPISAIHGAGTAEVLDKVLTFLPPKDQEGDE 174


>gi|62289366|ref|YP_221159.1| GTP-binding protein EngA [Brucella abortus bv. 1 str. 9-941]
 gi|82699291|ref|YP_413865.1| GTP-binding protein EngA [Brucella melitensis biovar Abortus 2308]
 gi|189023620|ref|YP_001934388.1| GTP-binding protein EngA [Brucella abortus S19]
 gi|237814855|ref|ZP_04593853.1| small GTP-binding protein [Brucella abortus str. 2308 A]
 gi|254688683|ref|ZP_05151937.1| GTP-binding protein EngA [Brucella abortus bv. 6 str. 870]
 gi|254696810|ref|ZP_05158638.1| GTP-binding protein EngA [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729717|ref|ZP_05188295.1| GTP-binding protein EngA [Brucella abortus bv. 4 str. 292]
 gi|256256930|ref|ZP_05462466.1| GTP-binding protein EngA [Brucella abortus bv. 9 str. C68]
 gi|260545880|ref|ZP_05821621.1| GTP-binding protein engA [Brucella abortus NCTC 8038]
 gi|260754159|ref|ZP_05866507.1| GTP-binding protein engA [Brucella abortus bv. 6 str. 870]
 gi|260757379|ref|ZP_05869727.1| GTP-binding protein engA [Brucella abortus bv. 4 str. 292]
 gi|260761203|ref|ZP_05873546.1| GTP-binding protein engA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883184|ref|ZP_05894798.1| GTP-binding protein engA [Brucella abortus bv. 9 str. C68]
 gi|297247781|ref|ZP_06931499.1| ribosome-associated GTPase EngA [Brucella abortus bv. 5 str. B3196]
 gi|75505338|sp|Q57EY6|DER_BRUAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123546332|sp|Q2YM98|DER_BRUA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238691492|sp|B2S9M3|DER_BRUA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|62195498|gb|AAX73798.1| GTP-binding protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615392|emb|CAJ10361.1| Uridine kinase:ATP/GTP-binding site motif A (P-loop):Ras GTPase
           superfamily:GTP-binding protein, HSR1-related:Small
           GTP-bindi [Brucella melitensis biovar Abortus 2308]
 gi|189019192|gb|ACD71914.1| GTP-binding protein EngA [Brucella abortus S19]
 gi|237789692|gb|EEP63902.1| small GTP-binding protein [Brucella abortus str. 2308 A]
 gi|260097287|gb|EEW81162.1| GTP-binding protein engA [Brucella abortus NCTC 8038]
 gi|260667697|gb|EEX54637.1| GTP-binding protein engA [Brucella abortus bv. 4 str. 292]
 gi|260671635|gb|EEX58456.1| GTP-binding protein engA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674267|gb|EEX61088.1| GTP-binding protein engA [Brucella abortus bv. 6 str. 870]
 gi|260872712|gb|EEX79781.1| GTP-binding protein engA [Brucella abortus bv. 9 str. C68]
 gi|297174950|gb|EFH34297.1| ribosome-associated GTPase EngA [Brucella abortus bv. 5 str. B3196]
          Length = 483

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 32/221 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           E  +D +E     +T   +  AD +L + +  +          E         + +  K+
Sbjct: 62  EAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKA 121

Query: 330 DLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +   +    YD           IS+  G+G+ +L + I  +L          + + +R  
Sbjct: 122 EARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL------GEERVFAEERQE 175

Query: 381 YHLSQTVRYLEMASL----NEKDCGLDIIAEN----LRLAS 413
               +      + +L     E     +I A +    LR+A 
Sbjct: 176 EAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAI 216



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 96/263 (36%), Gaps = 32/263 (12%)

Query: 93  NGILEELAKMPNLRLANPG--EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM 150
           + +L  +     +  A+    E  RR+ +   +   +AE+        +E     + +  
Sbjct: 84  DAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKAEARG------SEAGMYDAFQLG 137

Query: 151 SGELSSLYGQ-------WIDKLTHIRSF--IEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
            GE   +  +         D +  +     + A+    E  D     +         +++
Sbjct: 138 LGEPCPISAEHGQGMPDLRDAIVELLGEERVFAEERQEEAADEVFTPAAVGALVGDDIED 197

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
             +  I      + +R    I I+G  NAGKS+L N +  +D  +     G TRD ++ D
Sbjct: 198 PDAEEIPAYDATKPLR----IAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISAD 253

Query: 262 LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE----- 313
            +  G  + + DTAG+R    +    EK  +  +   +  A++++++ +     E     
Sbjct: 254 WEWHGRKINLFDTAGMRRKARVQEKLEKLSVADSLRAIRFAEVVIIVLDATIPFEKQDLQ 313

Query: 314 ---ISFPKNIDFIFIGTKSDLYS 333
              +   +    +    K DL  
Sbjct: 314 IADLIIREGRAPVIAFNKWDLIE 336


>gi|23501279|ref|NP_697406.1| GTP-binding protein EngA [Brucella suis 1330]
 gi|161618354|ref|YP_001592241.1| GTP-binding protein EngA [Brucella canis ATCC 23365]
 gi|225626893|ref|ZP_03784932.1| small GTP-binding protein [Brucella ceti str. Cudo]
 gi|254703735|ref|ZP_05165563.1| GTP-binding protein EngA [Brucella suis bv. 3 str. 686]
 gi|254707885|ref|ZP_05169713.1| GTP-binding protein EngA [Brucella pinnipedialis M163/99/10]
 gi|254709531|ref|ZP_05171342.1| GTP-binding protein EngA [Brucella pinnipedialis B2/94]
 gi|254713052|ref|ZP_05174863.1| GTP-binding protein EngA [Brucella ceti M644/93/1]
 gi|254716595|ref|ZP_05178406.1| GTP-binding protein EngA [Brucella ceti M13/05/1]
 gi|254718562|ref|ZP_05180373.1| GTP-binding protein EngA [Brucella sp. 83/13]
 gi|256031025|ref|ZP_05444639.1| GTP-binding protein EngA [Brucella pinnipedialis M292/94/1]
 gi|256060517|ref|ZP_05450686.1| GTP-binding protein EngA [Brucella neotomae 5K33]
 gi|256159079|ref|ZP_05456908.1| GTP-binding protein EngA [Brucella ceti M490/95/1]
 gi|256254428|ref|ZP_05459964.1| GTP-binding protein EngA [Brucella ceti B1/94]
 gi|256368832|ref|YP_003106338.1| GTP-binding protein EngA [Brucella microti CCM 4915]
 gi|260168157|ref|ZP_05754968.1| GTP-binding protein EngA [Brucella sp. F5/99]
 gi|260567011|ref|ZP_05837481.1| GTP-binding protein engA [Brucella suis bv. 4 str. 40]
 gi|261218394|ref|ZP_05932675.1| GTP-binding protein engA [Brucella ceti M13/05/1]
 gi|261221596|ref|ZP_05935877.1| GTP-binding protein engA [Brucella ceti B1/94]
 gi|261315376|ref|ZP_05954573.1| GTP-binding protein engA [Brucella pinnipedialis M163/99/10]
 gi|261317057|ref|ZP_05956254.1| GTP-binding protein engA [Brucella pinnipedialis B2/94]
 gi|261320757|ref|ZP_05959954.1| GTP-binding protein engA [Brucella ceti M644/93/1]
 gi|261324511|ref|ZP_05963708.1| GTP-binding protein engA [Brucella neotomae 5K33]
 gi|261754380|ref|ZP_05998089.1| GTP-binding protein engA [Brucella suis bv. 3 str. 686]
 gi|261757615|ref|ZP_06001324.1| GTP-binding protein engA [Brucella sp. F5/99]
 gi|265983537|ref|ZP_06096272.1| GTP-binding protein engA [Brucella sp. 83/13]
 gi|265988095|ref|ZP_06100652.1| GTP-binding protein engA [Brucella pinnipedialis M292/94/1]
 gi|265997559|ref|ZP_06110116.1| GTP-binding protein engA [Brucella ceti M490/95/1]
 gi|294851760|ref|ZP_06792433.1| ribosome-associated GTPase EngA [Brucella sp. NVSL 07-0026]
 gi|306837298|ref|ZP_07470181.1| small GTP-binding protein [Brucella sp. NF 2653]
 gi|306845011|ref|ZP_07477592.1| small GTP-binding protein [Brucella sp. BO1]
 gi|37999701|sp|Q8G2E8|DER_BRUSU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037138|sp|A9M8F4|DER_BRUC2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|23347166|gb|AAN29321.1| GTP-binding protein [Brucella suis 1330]
 gi|161335165|gb|ABX61470.1| small GTP-binding protein domain [Brucella canis ATCC 23365]
 gi|225618550|gb|EEH15593.1| small GTP-binding protein [Brucella ceti str. Cudo]
 gi|255998990|gb|ACU47389.1| GTP-binding protein EngA [Brucella microti CCM 4915]
 gi|260156529|gb|EEW91609.1| GTP-binding protein engA [Brucella suis bv. 4 str. 40]
 gi|260920180|gb|EEX86833.1| GTP-binding protein engA [Brucella ceti B1/94]
 gi|260923483|gb|EEX90051.1| GTP-binding protein engA [Brucella ceti M13/05/1]
 gi|261293447|gb|EEX96943.1| GTP-binding protein engA [Brucella ceti M644/93/1]
 gi|261296280|gb|EEX99776.1| GTP-binding protein engA [Brucella pinnipedialis B2/94]
 gi|261300491|gb|EEY03988.1| GTP-binding protein engA [Brucella neotomae 5K33]
 gi|261304402|gb|EEY07899.1| GTP-binding protein engA [Brucella pinnipedialis M163/99/10]
 gi|261737599|gb|EEY25595.1| GTP-binding protein engA [Brucella sp. F5/99]
 gi|261744133|gb|EEY32059.1| GTP-binding protein engA [Brucella suis bv. 3 str. 686]
 gi|262552027|gb|EEZ08017.1| GTP-binding protein engA [Brucella ceti M490/95/1]
 gi|264660292|gb|EEZ30553.1| GTP-binding protein engA [Brucella pinnipedialis M292/94/1]
 gi|264662129|gb|EEZ32390.1| GTP-binding protein engA [Brucella sp. 83/13]
 gi|294820349|gb|EFG37348.1| ribosome-associated GTPase EngA [Brucella sp. NVSL 07-0026]
 gi|306274643|gb|EFM56432.1| small GTP-binding protein [Brucella sp. BO1]
 gi|306407611|gb|EFM63807.1| small GTP-binding protein [Brucella sp. NF 2653]
          Length = 483

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 32/221 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           E  +D +E     +T   +  AD +L + +  +          E         + +  K+
Sbjct: 62  EAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKA 121

Query: 330 DLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +   +    YD           IS+  G+G+ +L + I  +L          + + +R  
Sbjct: 122 EARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL------GEERVFAEERQE 175

Query: 381 YHLSQTVRYLEMASL----NEKDCGLDIIAEN----LRLAS 413
               +      + +L     E     +I A +    LR+A 
Sbjct: 176 EAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAI 216



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 32/263 (12%)

Query: 93  NGILEELAKMPNLRLANPG--EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM 150
           + +L  +     +  A+    E  RR+ +   +   +AE+        +E     + +  
Sbjct: 84  DAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKAEARG------SEAGMYDAFQLG 137

Query: 151 SGELSSLYGQ-------WIDKLTHIRSF--IEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
            GE   +  +         D +  +     + A+    E  D     +         +++
Sbjct: 138 LGEPCPISAEHGQGMPDLRDAIVELLGEERVFAEERQEEAADEVFTPAAVGALVGDDIED 197

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
             +  I      + +R    I I+G  NAGKS+L N +  +D  +     G TRD ++ D
Sbjct: 198 PDAEEIPAYDATKPLR----IAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISAD 253

Query: 262 LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE----- 313
            +  G  +K+ DTAG+R    +    EK  +      +  A++++++ +     E     
Sbjct: 254 WEWHGRKIKLFDTAGMRRKARVQEKLEKLSVADGLRAIRFAEVVIIVLDATIPFEKQDLQ 313

Query: 314 ---ISFPKNIDFIFIGTKSDLYS 333
              +   +    +    K DL  
Sbjct: 314 IADLIIREGRAPVIAFNKWDLIE 336


>gi|325690931|gb|EGD32931.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK115]
          Length = 436

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 89/207 (42%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + +      E++ N    K  ++G  N GKSSL NA+  +D  I + + GTTRD +  
Sbjct: 156 LDAIVENLPNEEVVENPDMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
              D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ I  
Sbjct: 216 VFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       + +  K D                       +      +S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + IK I  ++  ++P ++ +
Sbjct: 334 QRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 17/161 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
              E +D           +SS  G G  ++++ I   L N+
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNE 166


>gi|149375007|ref|ZP_01892780.1| predicted GTPase [Marinobacter algicola DG893]
 gi|149360896|gb|EDM49347.1| predicted GTPase [Marinobacter algicola DG893]
          Length = 453

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 27/181 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +I I+G  N GKS+L N +  +D  IV D+PGTTRD + I  +       + DTAG+R
Sbjct: 155 GIRIGIVGRPNVGKSTLVNRMLGEDRVIVYDMPGTTRDSVYIPFERMDNQYTLIDTAGVR 214

Query: 279 ET---DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGT 327
                 ++VEK  I +T   +++A +++L+ +       +++             +    
Sbjct: 215 RRKNVSEVVEKFSIIKTLQAIDDAHVVILVIDAREGLVDQDLHLIGFVLDAGRSLVVAVN 274

Query: 328 KSD---------LYSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           K D         +        D       H IS+  G G+  + + + +   +   K P 
Sbjct: 275 KWDGMDPEDRAKVKEQVQRRLDFLDYADKHYISALHGSGVGVMYDSVHACYESAMAKWPT 334

Query: 372 S 372
           +
Sbjct: 335 N 335



 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 13/122 (10%)

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           + +   A+V D PG TRD    + + EG    + DT G+   ++ ++ E  +++   VE 
Sbjct: 1   MTRSRDALVADFPGLTRDRKYGEGNYEGQRFIVIDTGGLTGGEEGLDAEMARQSMQAVEE 60

Query: 299 ADLILLLKE----INSKKEI----SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
           AD++L L +    +N   E+              +  K+D      ++ D   S F   G
Sbjct: 61  ADIVLFLVDGKAGLNGGDELIAAHLRKTGKRAHLVVNKTD-----GQDPDIAASDFYALG 115

Query: 351 LE 352
            +
Sbjct: 116 FD 117


>gi|17987833|ref|NP_540467.1| GTP-binding protein EngA [Brucella melitensis bv. 1 str. 16M]
 gi|225851918|ref|YP_002732151.1| GTP-binding protein EngA [Brucella melitensis ATCC 23457]
 gi|256044100|ref|ZP_05447011.1| GTP-binding protein EngA [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112898|ref|ZP_05453814.1| GTP-binding protein EngA [Brucella melitensis bv. 3 str. Ether]
 gi|256264570|ref|ZP_05467102.1| GTP-binding protein engA [Brucella melitensis bv. 2 str. 63/9]
 gi|260563458|ref|ZP_05833944.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. 16M]
 gi|265990512|ref|ZP_06103069.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994340|ref|ZP_06106897.1| GTP-binding protein engA [Brucella melitensis bv. 3 str. Ether]
 gi|26006723|sp|Q8YFH2|DER_BRUME RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783140|sp|C0RH89|DER_BRUMB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|17983561|gb|AAL52731.1| gtp-binding protein [Brucella melitensis bv. 1 str. 16M]
 gi|225640283|gb|ACO00197.1| small GTP-binding protein [Brucella melitensis ATCC 23457]
 gi|260153474|gb|EEW88566.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. 16M]
 gi|262765453|gb|EEZ11242.1| GTP-binding protein engA [Brucella melitensis bv. 3 str. Ether]
 gi|263001296|gb|EEZ13871.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094935|gb|EEZ18643.1| GTP-binding protein engA [Brucella melitensis bv. 2 str. 63/9]
 gi|326408416|gb|ADZ65481.1| GTP-binding protein EngA [Brucella melitensis M28]
 gi|326538130|gb|ADZ86345.1| small GTP-binding protein [Brucella melitensis M5-90]
          Length = 483

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 32/221 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           E  +D +E     +T   +  AD +L + +  +          E         + +  K+
Sbjct: 62  EAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKA 121

Query: 330 DLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +   +    YD           IS+  G+G+ +L + I  +L          + + +R  
Sbjct: 122 EARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL------GEERVFAEERQE 175

Query: 381 YHLSQTVRYLEMASL----NEKDCGLDIIAEN----LRLAS 413
               +      + +L     E     +I A +    LR+A 
Sbjct: 176 EAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAI 216



 Score = 96.5 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 97/263 (36%), Gaps = 32/263 (12%)

Query: 93  NGILEELAKMPNLRLANPG--EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM 150
           + +L  +     +  A+    E  RR+ +   +   +AE+        +E     + +  
Sbjct: 84  DAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKAEARG------SEAGMYDAFQLG 137

Query: 151 SGELSSLYGQ-------WIDKLTHIRSF--IEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
            GE   +  +         D +  +     + A+    E  D     +         +++
Sbjct: 138 LGEPCPISAEHGQGMPDLRDAIVELLGEERVFAEERQEEAADEVFTPAAVGALVGDDIED 197

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
             +  I      + +R    I I+G  NAGKS+L N +  +D  +     G TRD ++ D
Sbjct: 198 PDAEEIPAYDATKPLR----IAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISAD 253

Query: 262 LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE----- 313
            +  G  +K+ DTAG+R    +    EK  +  +   +  A++++++ +     E     
Sbjct: 254 WEWHGRKIKLFDTAGMRRKARVQEKLEKLSVADSLRAIRFAEVVIIVLDATIPFEKQDLQ 313

Query: 314 ---ISFPKNIDFIFIGTKSDLYS 333
              +   +    +    K DL  
Sbjct: 314 IADLIIREGRAPVIAFNKWDLIE 336


>gi|324991285|gb|EGC23218.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK353]
          Length = 436

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 89/207 (42%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + +      E++ N    K  ++G  N GKSSL NA+  ++  I + + GTTRD +  
Sbjct: 156 LDAIVENLPNEEVVENPDMIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
              D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ I  
Sbjct: 216 VFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       I +  K D                       +      +S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKDWEADIRDQFQYLSYAPIIFVSALTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + IK I  ++  ++P ++ +
Sbjct: 334 QRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
              E +D           +SS  G G  ++++ I   L N+
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNE 166


>gi|94989793|ref|YP_597893.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS10270]
 gi|94993678|ref|YP_601776.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS10750]
 gi|166225863|sp|Q1JIH4|DER_STRPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225864|sp|Q1J8C9|DER_STRPF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|94543301|gb|ABF33349.1| GTP-binding protein [Streptococcus pyogenes MGAS10270]
 gi|94547186|gb|ABF37232.1| GTP-binding protein [Streptococcus pyogenes MGAS10750]
          Length = 436

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 66  APFMEQIKHQAQIAMEEADVIVFVVSGKEGVTDADEYVSKILYRTNTPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  +  +    I 
Sbjct: 126 MRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPVEEAEENDDII 175



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  +  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLP-VEEAEENDDIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D +G    + DTAG+R++  I    EK  + R    ++ +D++L++  IN+++ 
Sbjct: 213 IDTHFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       T      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTLDKDNHTVAKWEADIRDQFQFLTYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++ K++P ++ +
Sbjct: 331 LTKQRLNKLPDLIKRISESQNKRIPSAVLN 360


>gi|47459318|ref|YP_016180.1| GTP-binding protein EngA [Mycoplasma mobile 163K]
 gi|47458648|gb|AAT27969.1| predicted GTPase protein [Mycoplasma mobile 163K]
          Length = 432

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 15/151 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  K  A+V DIPG TRD L      +G   ++ DT GI+  D
Sbjct: 5   IAIVGKPNVGKSTIFNRIIGKRQAVVADIPGVTRDRLYEKATWDGKTFEVVDTGGIQIED 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
              +K+   +  + +E AD+I+ + E  S+         +I    N    F+  K +   
Sbjct: 65  VPFQKQIKIQAMIAIEEADVIIFVVEGRSELSKDDYLIVDILRKSNKQIFFVANKLEDNH 124

Query: 331 --LYSTYTEEYD--HLISSFTGEGLEELINK 357
              +S Y   +D    IS+  GEG+ +L+  
Sbjct: 125 EFDHSLYKLGFDKIFKISALHGEGIGDLLEA 155



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 23/167 (13%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K   I    +KI I+G  NAGKSSL N +  ++ +IV+ IPGTT D ++     +   +K
Sbjct: 162 KDENIEDKDFKIAIIGKPNAGKSSLLNTILDEERSIVSPIPGTTHDPISESFYYKDEKLK 221

Query: 271 ISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKN 319
           I DTAGI +     D ++   + R F  +E ++L+LL+ + +        +    SF +N
Sbjct: 222 IIDTAGIIKKSRMADDIDFYILNRAFKTIEESNLVLLILDASLGSTHFDATIAGTSFEQN 281

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
              I +  K DL                 + +EE   KI++     F
Sbjct: 282 KPIIIVVNKWDLIEK------------NEKTMEEFTKKIRAQFHFLF 316


>gi|157150518|ref|YP_001449828.1| GTP-binding protein EngA [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189037167|sp|A8AVL8|DER_STRGC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157075312|gb|ABV09995.1| GTP-binding protein engA [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 436

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  K  ++G  N GKSSL NA+  ++  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPNEEVAENP-DMIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ 
Sbjct: 213 IDTVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       + +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEADIRDQFQYLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    D       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATADWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              E +D           +SS  G G  ++++ I   L N+       + 
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVAENPDMI 175


>gi|78217514|gb|ABB36863.1| GTP-binding protein EngA [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 475

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 28/196 (14%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
                 E  R   K+ +LG  NAGKSSL NAL+     IV+D+ GTTRD + I ++L G 
Sbjct: 198 EDAPQEEEER-PLKLAMLGRPNAGKSSLVNALSGSRRMIVSDVAGTTRDSVDIAVELGGR 256

Query: 268 LVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISF-- 316
                DTAG+R   +  D VE+  +  +      AD+ L++ +         K+ I    
Sbjct: 257 RYVFVDTAGVRRRAKIQDPVERYSVNSSLKSTTKADVTLVVLDAVEGLTQQDKRLIDLLD 316

Query: 317 PKNIDFIFIGTKSDLYST---------YTEEYDHL-------ISSFTGEGLEELINKIKS 360
            +   F+ +  K DL            Y +            IS+ +G G+++L+   + 
Sbjct: 317 ERKTPFMLVINKIDLVPRDGLTALKRLYDDALTFCKHVPIMYISARSGRGVDKLLPMARK 376

Query: 361 ILSNKFKKLPFSIPSH 376
           I    + ++   + + 
Sbjct: 377 INKECYVRVGTGLLNR 392



 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 23/131 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS+LFN L + + AI  D PG TRD +   + +      I DT GI   
Sbjct: 24  KIALIGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGYVKVGDRKFIIIDTGGITLD 83

Query: 281 DDI-----------VEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKN 319
           +              E E +++T   +  AD + L   ++ ++ ++              
Sbjct: 84  EHAAVAEGPDELRGFEAEILRQTEEAI--ADSVALCLVVDGREGLTPFDESLAAYVRKSG 141

Query: 320 IDFIFIGTKSD 330
              +    K D
Sbjct: 142 KPVLLAVNKVD 152


>gi|325695118|gb|EGD37020.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK150]
          Length = 436

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  K  ++G  N GKSSL NA+  ++  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPNEEVAENP-DMIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ 
Sbjct: 213 IDTVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       + +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              E +D           +SS  G G  ++++ I   L N+       + 
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVAENPDMI 175


>gi|307610240|emb|CBW99801.1| hypothetical protein LPW_15641 [Legionella pneumophila 130b]
          Length = 462

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 102/285 (35%), Gaps = 38/285 (13%)

Query: 120 NGKIDLLEAESLADLISSET-----EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
             ++ L EA  +  L+   +     + Q   ++  ++ ++  +  +     T   +   A
Sbjct: 74  QSQVALNEANVILFLVDGRSGLTGIDQQIAQALRKLNKKVHLVVNK-----TDGINEDIA 128

Query: 175 DLDFSEEEDVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
             DF         +        I  L  +I                 KI   G  N GKS
Sbjct: 129 CADFQSLGITDIHAISASHGGGISSLLEEILEPFITEMHEATDDKAIKIAFAGRPNVGKS 188

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIK 290
           +L N +  ++  +V D+PGTTRD ++I    E     + DTAG+R     D+ +EK  + 
Sbjct: 189 TLINRILGEERVVVYDMPGTTRDSISIPFTREDKQYVLIDTAGVRRKSRIDEKIEKFSVI 248

Query: 291 RTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSD-LYSTYTEEY-- 339
           +T   ++ A + LLL + N   + ++++            +    K D L   + E+   
Sbjct: 249 KTLQAIKEAHVCLLLLDANEGITDQDMNLLGFIIESGKALVIAVNKWDGLEEEHKEKIKS 308

Query: 340 -------------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                           IS+  G G+  L   I     +  +    
Sbjct: 309 ELSRRLHFANFAKIRFISALHGSGVGGLFKDINEAYHSAIQSFST 353



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D PG TRD        E     I DT GI   D
Sbjct: 5   IALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGIGVDD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             V+    +++ + +  A++IL L +  S          +     N     +  K+D  +
Sbjct: 65  IEVDTLMSRQSQVALNEANVILFLVDGRSGLTGIDQQIAQALRKLNKKVHLVVNKTDGIN 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKK 368
                 D         H IS+  G G+  L+ +I      +  +
Sbjct: 125 EDIACADFQSLGITDIHAISASHGGGISSLLEEILEPFITEMHE 168


>gi|241758625|ref|ZP_04756739.1| ribosome-associated GTPase EngA [Neisseria flavescens SK114]
 gi|241321136|gb|EER57332.1| ribosome-associated GTPase EngA [Neisseria flavescens SK114]
          Length = 485

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 27/205 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L  DI     + +  E         ++G  N GKS+L NA+  ++  I  ++ GTTRD +
Sbjct: 155 LIEDILETFPEPEKEEEEAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFNMAGTTRDSI 214

Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
            ID + EG    I DTAG+R   + D+ VEK  + +    VE A++ +L+ +        
Sbjct: 215 HIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQ 274

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGL 351
                  +       +    K D  S    E                  H IS+    G+
Sbjct: 275 DATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI 334

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L   I++  +    K+P    + 
Sbjct: 335 DGLFESIQAAYNAAMIKMPTPKITR 359



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD       +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
           D  +  E  K+T   V+ AD ++ L +  +          +              K    
Sbjct: 65  DSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                +  +        ++IS   G+G+  LI  I    
Sbjct: 125 NRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETF 163


>gi|322386141|ref|ZP_08059775.1| ribosome-associated GTPase EngA [Streptococcus cristatus ATCC
           51100]
 gi|321269833|gb|EFX52759.1| ribosome-associated GTPase EngA [Streptococcus cristatus ATCC
           51100]
          Length = 436

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 89/207 (42%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + +      E++ N    K  ++G  N GKSSL NA+  +D  I + + GTTRD +  
Sbjct: 156 LDAIVENLPHEEVVENPDMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
              D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ I  
Sbjct: 216 VFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       + +  K D                       +      +S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + IK I  ++  ++P ++ +
Sbjct: 334 QRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    D       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATADWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
              E YD           +SS  G G  ++++ I   L ++
Sbjct: 126 MRNEIYDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPHE 166


>gi|237708020|ref|ZP_04538501.1| GTP-binding protein EngA [Bacteroides sp. 9_1_42FAA]
 gi|265754193|ref|ZP_06089382.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_33FAA]
 gi|229458006|gb|EEO63727.1| GTP-binding protein EngA [Bacteroides sp. 9_1_42FAA]
 gi|263234902|gb|EEZ20457.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_33FAA]
          Length = 437

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 32/195 (16%)

Query: 210 GKLGEII--RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            K GE +   +  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+
Sbjct: 164 SKEGEELLDEDIPRFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYEKFGF 223

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISF 316
              + DTAGIR+ + +    E   + R+   +EN+D+ +L+ + +   E        +  
Sbjct: 224 DFYLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENSDVCILMLDASRGIEGQDLNIFSLIQ 283

Query: 317 PKNIDFIFIGTKSDLYST-------------------YTEEYDHLISSFTGEGLEELINK 357
                 + +  K DL                      + +      S+ T + + +++  
Sbjct: 284 RNQKGLVVVVNKWDLVENKDAKVMKTYEEAIRSRLAPFVDFPIIFASALTKQRIFKVLET 343

Query: 358 IKSILSNKFKKLPFS 372
            K +   +  ++P +
Sbjct: 344 AKEVYQARTTRIPTA 358



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G+   + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
             + D+ E+E  K+  L ++ AD+IL + ++         +   I        I +  K+
Sbjct: 62  VNSGDVFEEEIRKQVSLAIDEADVILFVVDVVNGVTDLDMAVASILRRTKKPVIMVANKT 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D   L     E Y       + IS+ +G G  EL++ +    S + ++L
Sbjct: 122 DNNELQYNAAEFYKLGLGDPYCISALSGSGTGELLDLVVGKFSKEGEEL 170


>gi|212212370|ref|YP_002303306.1| GTP-binding protein EngA [Coxiella burnetii CbuG_Q212]
 gi|238058972|sp|B6IZN3|DER_COXB2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|212010780|gb|ACJ18161.1| GTP-binding protein [Coxiella burnetii CbuG_Q212]
          Length = 443

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 87/222 (39%), Gaps = 32/222 (14%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L   +  ++ + K       G KI ++G  N GKS+L N L  ++  IV D PGTTRD
Sbjct: 153 KDLMTQVLENLPEEKEVIEKEVGIKIAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRD 212

Query: 257 VLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEIN---S 310
            + I          + DTAGIR   +  D VEK  + ++   +  AD+++ L +     +
Sbjct: 213 SIYIPFARNDENYTLIDTAGIRRRAKIQDYVEKFSMIKSLQAMHAADVVIFLLDARQGVT 272

Query: 311 KKEISFPK-----NIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGE 349
           ++++          +  I    K D  +    +                  + IS+  G 
Sbjct: 273 EQDLRLLNRIVEAGVSLIIAVNKWDGLNIEERDNVRNAIDRRMPFVDFARRYFISALHGT 332

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
           G+ +L   I+    +  ++L     +       L + V   E
Sbjct: 333 GVGKLFRAIQESYQSIQQELTTGQLTR-----ALEKAVAEHE 369



 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L K   A+V D+PG TRD    +  ++   + + DT G+ +T+
Sbjct: 5   IAIVGRPNVGKSTLFNYLTKSRAALVADVPGVTRDRQYGETTIDSQRLLLVDTGGLVDTE 64

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +       + +    ++ +D IL L +  +          E    K         K+D  
Sbjct: 65  NKEVAPLAETQVEQAIDESDCILFLVDAKAGLVPADEIIAERLHKKGKKIFLAVNKADRA 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
                + D           I++ +G G+++L+ ++   L 
Sbjct: 125 RAAVVQSDFYKLGFGEPYVIAAASGRGVKDLMTQVLENLP 164


>gi|256851011|ref|ZP_05556400.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 27-2-CHN]
 gi|260661223|ref|ZP_05862137.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 115-3-CHN]
 gi|282932036|ref|ZP_06337494.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1]
 gi|256616073|gb|EEU21261.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 27-2-CHN]
 gi|260548160|gb|EEX24136.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 115-3-CHN]
 gi|281303803|gb|EFA95947.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1]
          Length = 436

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD         G+   I DT GI    
Sbjct: 6   VAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGGITWEG 65

Query: 282 DIVEKEGIKRTFLEVENADLI-------LLLKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
             +E E   +  + +E AD+I       L L +++ +   I +  +   I    K+D   
Sbjct: 66  GRIEDEIRAQADIAMEEADVIVMITSVALHLTDLDERIARILYRSSKPVILAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              + YD           ISS  G G+ +L++ +      +       
Sbjct: 126 QRADIYDFYSLGLGDPIPISSTHGTGIGDLLDAVVENFPPEADTKDED 173



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 30/190 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAG 276
           +     ++G  N GKSS+ NA+  +   IV +  GTTRD +    +  +G   ++ DTAG
Sbjct: 173 DEIAFSVIGRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVDTPFVAEDGTKFRMIDTAG 232

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           IR    +    EK  + R    ++ +D++ L+ + ++            +       I +
Sbjct: 233 IRRRGKVYEKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQDKHVAGFAHDAGRGMIIV 292

Query: 326 GTKSDLYST-----------YTEEY-------DHLISSFTGEGLEELINKIKSILSNKFK 367
             K DL                EE+          +S+ TG+ L++L + IK +  N+ +
Sbjct: 293 VNKWDLPKKDSNSAKDFTRVIREEFQYLDYAPIIFVSAKTGKNLDQLPDLIKEVAENQSQ 352

Query: 368 KLPFSIPSHK 377
           ++  S+ +  
Sbjct: 353 RIQSSVLNDM 362


>gi|125718602|ref|YP_001035735.1| GTP-binding protein EngA [Streptococcus sanguinis SK36]
 gi|166225867|sp|A3CPT0|DER_STRSV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|125498519|gb|ABN45185.1| GTP-binding protein, putative [Streptococcus sanguinis SK36]
          Length = 436

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 89/207 (42%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + +      E++ N    K  ++G  N GKSSL NA+  ++  I + + GTTRD +  
Sbjct: 156 LDAIVENLPNEEVVENPDMIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
              D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ I  
Sbjct: 216 VFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       + +  K D                       +      +S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + IK I  ++  ++P ++ +
Sbjct: 334 QRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
              E +D           +SS  G G  ++++ I   L N+
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNE 166


>gi|327474514|gb|EGF19919.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK408]
          Length = 436

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 89/207 (42%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + +      E++ N    K  ++G  N GKSSL NA+  ++  I + + GTTRD +  
Sbjct: 156 LDAIVENLPNEEVVENPDMIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
              D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ I  
Sbjct: 216 VFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       + +  K D                       +      +S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + IK I  ++  ++P ++ +
Sbjct: 334 QRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 17/161 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
              E +D           +SS  G G  ++++ I   L N+
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNE 166


>gi|254693167|ref|ZP_05154995.1| GTP-binding protein EngA [Brucella abortus bv. 3 str. Tulya]
 gi|261213405|ref|ZP_05927686.1| GTP-binding protein engA [Brucella abortus bv. 3 str. Tulya]
 gi|260915012|gb|EEX81873.1| GTP-binding protein engA [Brucella abortus bv. 3 str. Tulya]
          Length = 483

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 32/221 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           E  +D +E     +T   +  AD +L + +  +          E         + +  K+
Sbjct: 62  EAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKA 121

Query: 330 DLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +   +    YD           IS+  G+G+ +L + I  +L          + + +R  
Sbjct: 122 EARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL------GEERVFAEERQE 175

Query: 381 YHLSQTVRYLEMASL----NEKDCGLDIIAEN----LRLAS 413
               +      + +L     E     +I A +    LR+A 
Sbjct: 176 EAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAI 216



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 96/263 (36%), Gaps = 32/263 (12%)

Query: 93  NGILEELAKMPNLRLANPG--EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM 150
           + +L  +     +  A+    E  RR+ +   +   +AE+        +E     + +  
Sbjct: 84  DAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKAEARG------SEAGMYDAFQLG 137

Query: 151 SGELSSLYGQ-------WIDKLTHIRSF--IEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
            GE   +  +         D +  +     + A+    E  D     +         +++
Sbjct: 138 LGEPCPISAEHGQGMPDLRDAIVELLGEERVFAEERQEEAADEVFTPAAVGALVGDDIED 197

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
             +  I      + +R    I I+G  NAGKS+L N +  +D  +     G TRD ++ D
Sbjct: 198 PDAEEIPAYDATKPLR----IAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISAD 253

Query: 262 LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE----- 313
            +  G  + + DTAG+R    +    EK  +  +   +  A++++++ +     E     
Sbjct: 254 WEWHGRKINLFDTAGMRRKARVQEKLEKLSVADSLRAIRFAEVVIIVLDATIPFEKQDLQ 313

Query: 314 ---ISFPKNIDFIFIGTKSDLYS 333
              +   +    +    K DL  
Sbjct: 314 IADLIIREGRAPVIAFNKWDLIE 336


>gi|218516154|ref|ZP_03512994.1| GTP-binding protein EngA [Rhizobium etli 8C-3]
          Length = 284

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
            D+   +     +T   ++ ADL L + +          +  E+   +    + +  KS+
Sbjct: 63  ADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
              + +  YD           IS+  G+G+ +L + I   +
Sbjct: 123 ARGSDSGFYDAYTLGLGEPTPISAEHGQGMLDLRDAIVEAI 163



 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R 
Sbjct: 203 LRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRR 262

Query: 280 TDDIV---EKEGIKRTFLEVE 297
              +    EK  +      + 
Sbjct: 263 KARVTEKLEKLSVADALRAIR 283


>gi|212690523|ref|ZP_03298651.1| hypothetical protein BACDOR_00005 [Bacteroides dorei DSM 17855]
 gi|212666872|gb|EEB27444.1| hypothetical protein BACDOR_00005 [Bacteroides dorei DSM 17855]
          Length = 455

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 32/195 (16%)

Query: 210 GKLGEII--RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            K GE +   +  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+
Sbjct: 182 SKEGEELLDEDIPRFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYEKFGF 241

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISF 316
              + DTAGIR+ + +    E   + R+   +EN+D+ +L+ + +   E        +  
Sbjct: 242 DFYLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENSDVCILMLDASRGIEGQDLNIFSLIQ 301

Query: 317 PKNIDFIFIGTKSDLYST-------------------YTEEYDHLISSFTGEGLEELINK 357
                 + +  K DL                      + +      S+ T + + +++  
Sbjct: 302 RNQKGLVVVVNKWDLVENKDAKVMKTYEEAIRSRLAPFVDFPIIFASALTKQRIFKVLET 361

Query: 358 IKSILSNKFKKLPFS 372
            K +   +  ++P +
Sbjct: 362 AKEVYQARTTRIPTA 376



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 18/181 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           I         + G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G
Sbjct: 8   IDCDSRKTRKKMGNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVG 67

Query: 267 YLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFP 317
           +   + DT G +  + D+ E+E  K+  L ++ AD+IL + ++         +   I   
Sbjct: 68  HEFSVVDTGGWVVNSGDVFEEEIRKQVSLAIDEADVILFVVDVVNGVTDLDMAVASILRR 127

Query: 318 KNIDFIFIGTKSD---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKK 368
                I +  K+D   L     E Y       + IS+ +G G  EL++ +    S + ++
Sbjct: 128 TKKPVIMVANKTDNNELQYNAAEFYKLGLGDPYCISALSGSGTGELLDLVVGKFSKEGEE 187

Query: 369 L 369
           L
Sbjct: 188 L 188


>gi|259046866|ref|ZP_05737267.1| ribosome-associated GTPase EngA [Granulicatella adiacens ATCC
           49175]
 gi|259036489|gb|EEW37744.1| ribosome-associated GTPase EngA [Granulicatella adiacens ATCC
           49175]
          Length = 437

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 17/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN +  + ++IV DI G TRD +  + +  G+   I DT GI  TD
Sbjct: 6   IAVVGRPNVGKSTIFNRIVGERISIVEDIAGVTRDRIYSEGEWLGHSFNIIDTGGIDITD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           +        +  + +E AD+I+ L  +            ++ +  N   +    K D   
Sbjct: 66  EPFMSNIRMQAEIAMEEADVIIFLTSVKEGVTTTDEHIAKLLYRTNKPVLLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +E +D           IS   G GL +L++               
Sbjct: 126 LRSEIFDFYALGFGEPFPISGSHGLGLGDLLDAAVKAFPEDKGDEED 172



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 16/168 (9%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +       + K  E  ++  K   +G  N GKSSL NA+  ++  IV+++ GTTRD 
Sbjct: 154 DLLDAAVKAFPEDKGDEEDKDVIKFSFIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA 213

Query: 258 LTIDLDL-EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +    +  EG + K+ DTAGIR+   +    EK  + R    +E +D++ ++  +N+++ 
Sbjct: 214 IDTTFEDEEGTVFKMIDTAGIRKKGRVFESTEKYSVLRALRAIERSDIVCVV--LNAEEG 271

Query: 314 I----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           I          +       + +  K D        Y         E L
Sbjct: 272 IQEQDKKIAGYAHEAGKGVVILVNKWDTLEKDNSTYKEFEDKIRQEFL 319


>gi|257457196|ref|ZP_05622372.1| ribosome-associated GTPase EngA [Treponema vincentii ATCC 35580]
 gi|257445455|gb|EEV20522.1| ribosome-associated GTPase EngA [Treponema vincentii ATCC 35580]
          Length = 506

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 98/235 (41%), Gaps = 33/235 (14%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVIL 225
              ++      F     +    S E  ++I  L  +I+  +   ++ E   +   +I ++
Sbjct: 188 EAEAYNYLSFGFPSLLCI----SAEHGDNITPLAEEITKGLDFSRVCEAPADTAIRIALI 243

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI-- 283
           G  N GKS+L N L K   +IV+DI GTTRDV+  +   +G    I DTAGIR    +  
Sbjct: 244 GKPNTGKSTLSNYLTKTSASIVSDIAGTTRDVVEGEFFYKGRQFIIQDTAGIRRKTKVKE 303

Query: 284 -VEKEGIKRTFLEVENADLILLLKEIN------SKKEI--SFPKNIDFIFIGTKSDLYST 334
            +E   + R    +ENAD++  L +         KK I  +  + +  IF+  K DL   
Sbjct: 304 DIEYYSVVRAMKSLENADIVFHLIDAEEGLTEQDKKIIVQATKRGLGVIFVLNKWDLVKG 363

Query: 335 YTEEYD-----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +  D                   +S+  G G+ +L+N    +     KK+  S
Sbjct: 364 EKKFRDAEQYIKIMFGKMEYAPIVPVSAQKGSGIPDLLNTALELFDQLTKKVETS 418



 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 22/173 (12%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
               +   N   +VI G  N GKS+LFN   +K  AI    PG TRD +     + G  V
Sbjct: 50  FDYRKKYENTPLVVIAGRPNVGKSTLFNRFLRKRRAITDPTPGVTRDPIEAQAIINGLPV 109

Query: 270 KISDTAGIRET------DDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPK 318
           ++ DT G + T      DD++++  +++T   +  AD ILLL E ++        I F +
Sbjct: 110 RLMDTGGFKLTRSGDKNDDMMDELVVEKTQDALRRADKILLLLEASAPTAEDEEFIRFLR 169

Query: 319 NIDFIFI--GTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKS 360
                 I    K++      E Y++          IS+  G+ +  L  +I  
Sbjct: 170 PYWDKLITAVNKTEGGRGEAEAYNYLSFGFPSLLCISAEHGDNITPLAEEITK 222


>gi|254248074|ref|ZP_04941395.1| Small GTP-binding protein domain [Burkholderia cenocepacia PC184]
 gi|124872850|gb|EAY64566.1| Small GTP-binding protein domain [Burkholderia cenocepacia PC184]
          Length = 445

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L NAL  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--AQQDISDQDAHIAGFVVEQGRALVIG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  +                  H IS+    G+  L+  +    +    KL
Sbjct: 297 VNKWDGLDDHARDRAKADLTRKLKFLDFAKSHFISAAKKTGIGALMRSVDDAYAAAMAKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      I DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLIVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +          S  +           +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                  D           IS+  G+G+ ++IN+   +      + 
Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDMINEALEVAYAGQPEE 170


>gi|308174076|ref|YP_003920781.1| GTPase [Bacillus amyloliquefaciens DSM 7]
 gi|307606940|emb|CBI43311.1| GTPase essential for ribosome 50S subunit assembly [Bacillus
           amyloliquefaciens DSM 7]
 gi|328552798|gb|AEB23290.1| GTP-binding protein Der [Bacillus amyloliquefaciens TA208]
 gi|328912406|gb|AEB64002.1| GTPase essential for ribosome 50S subunit assembly [Bacillus
           amyloliquefaciens LL3]
          Length = 436

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 30/228 (13%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   T+    L++  +         +    +    +     L F 
Sbjct: 91  NGREGVTSADEEVAKILYRTKKPVVLAVNKLDNT------EMRANIYDFYA-----LGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   +    L D   L +  + H       +   +  +  ++G  N GKSSL NA+
Sbjct: 140 EPYPISG-THGLGLGD---LLDACAEHFKNIPETKYNDDVVQFCLIGRPNVGKSSLVNAM 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+++ GTTRD +            I DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEERVIVSNVAGTTRDAVDTAFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYST 334
           + +D++ ++  +N+++ I          +       + I  K D    
Sbjct: 256 DRSDVVGVV--LNAEEGILEQDKRIAGYAHEAGKAVVIIVNKWDAVDK 301



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + S  E    I +      +    K D   
Sbjct: 66  EPFLTQIRQQAEIAMDEADVIIFMVNGREGVTSADEEVAKILYRTKKPVVLAVNKLDNTE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
                YD           IS   G GL +L++       N
Sbjct: 126 MRANIYDFYALGFGEPYPISGTHGLGLGDLLDACAEHFKN 165


>gi|306827971|ref|ZP_07461238.1| ribosome-associated GTPase EngA [Streptococcus pyogenes ATCC 10782]
 gi|304429890|gb|EFM32932.1| ribosome-associated GTPase EngA [Streptococcus pyogenes ATCC 10782]
          Length = 436

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 17/171 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 66  APFMEQIKHQAQIAMEEADVIVFVVSGKEGVTDADEYVSKILYRTNTPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
              + YD           +SS  G G  ++++ I   L  +  +    I  
Sbjct: 126 MRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPVEEVEENDDIIH 176



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 89/207 (42%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + +    + E+  N       ++G  N GKSSL NA+  +D  I + + GTTRD +  
Sbjct: 156 LDAIVENLPVEEVEENDDIIHFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
              D +G    + DTAG+R++  I    EK  + R    ++ +D++L++  IN+++ I  
Sbjct: 216 HFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAIRAIDRSDVVLMV--INAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       I +  K D                       T      +S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGMIIVVNKWDTIDKDNHTVAKWEADIRDQFQFLTYAPIIFVSALTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + IK I  ++ K++P ++ +
Sbjct: 334 QRLNKLPDLIKRISESQNKRIPSAVLN 360


>gi|29654548|ref|NP_820240.1| GTP-binding protein EngA [Coxiella burnetii RSA 493]
 gi|153208833|ref|ZP_01947057.1| GTP-binding protein EngA [Coxiella burnetii 'MSU Goat Q177']
 gi|154706295|ref|YP_001424682.1| GTP-binding protein EngA [Coxiella burnetii Dugway 5J108-111]
 gi|161830868|ref|YP_001597096.1| GTP-binding protein EngA [Coxiella burnetii RSA 331]
 gi|165921454|ref|ZP_02219642.1| GTP-binding protein EngA [Coxiella burnetii RSA 334]
 gi|212218660|ref|YP_002305447.1| GTP-binding protein EngA [Coxiella burnetii CbuK_Q154]
 gi|41017032|sp|Q83C83|DER_COXBU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037144|sp|A9KFU3|DER_COXBN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037145|sp|A9NDV6|DER_COXBR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238058971|sp|B6J7Q3|DER_COXB1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|29541815|gb|AAO90754.1| GTP-binding protein [Coxiella burnetii RSA 493]
 gi|120575684|gb|EAX32308.1| GTP-binding protein EngA [Coxiella burnetii 'MSU Goat Q177']
 gi|154355581|gb|ABS77043.1| GTP-binding protein [Coxiella burnetii Dugway 5J108-111]
 gi|161762735|gb|ABX78377.1| GTP-binding protein EngA [Coxiella burnetii RSA 331]
 gi|165916769|gb|EDR35373.1| GTP-binding protein EngA [Coxiella burnetii RSA 334]
 gi|212012922|gb|ACJ20302.1| GTP-binding protein [Coxiella burnetii CbuK_Q154]
          Length = 443

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 87/222 (39%), Gaps = 32/222 (14%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L   +  ++ + K       G KI ++G  N GKS+L N L  ++  IV D PGTTRD
Sbjct: 153 KDLMTQVLENLPEEKEVIEKEVGIKIAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRD 212

Query: 257 VLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEIN---S 310
            + I          + DTAGIR   +  D VEK  + ++   +  AD+++ L +     +
Sbjct: 213 SIYIPFARNDENYTLIDTAGIRRRAKIQDYVEKFSMIKSLQAMHAADVVIFLLDARQGVT 272

Query: 311 KKEISFPK-----NIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGE 349
           ++++          +  I    K D  +    +                  + IS+  G 
Sbjct: 273 EQDLRLLNRIVEAGVSLIIAVNKWDGLNIEERDNVRNAIDRRMPFVDFARRYFISALHGT 332

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
           G+ +L   I+    +  ++L     +       L + V   E
Sbjct: 333 GVGKLFRAIQESYQSIQQELTTGQLTR-----ALEKAVAEHE 369



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L K   A+V D+PG TRD    +  ++   + + DT G+ +T+
Sbjct: 5   IAIVGRPNVGKSTLFNYLTKSRAALVADVPGVTRDRQYGETTIDSQRLLLVDTGGLVDTE 64

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +       + +    ++ +D IL L +  +          E    K         K+D  
Sbjct: 65  NKEVAPLAETQVEQAIDESDCILFLVDAKAGLVPADEIIAERLRKKGKKIFLAVNKADRA 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
                + D           I++ +G G+++L+ ++   L 
Sbjct: 125 RAAVVQSDFYKLGFGEPYVIAAASGRGVKDLMTQVLENLP 164


>gi|325696369|gb|EGD38260.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK160]
          Length = 436

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  K  ++G  N GKSSL NA+  ++  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPNEEIAENP-DMIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ 
Sbjct: 213 IDTVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKDWEADIRDQFQYLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPDMIKQISQSQNTRIPSAVLN 360



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              E +D           +SS  G G  ++++ I   L N+       + 
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEIAENPDMI 175


>gi|306842332|ref|ZP_07474991.1| small GTP-binding protein [Brucella sp. BO2]
 gi|306287548|gb|EFM59007.1| small GTP-binding protein [Brucella sp. BO2]
          Length = 483

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 32/221 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDARLYDLKFQVIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           E  +D +E     +T   +  AD +L + +  +          E         + +  K+
Sbjct: 62  EAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKA 121

Query: 330 DLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +   +    YD           IS+  G+G+ +L + I  +L          + + +R  
Sbjct: 122 EARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL------GEERVFAEERQE 175

Query: 381 YHLSQTVRYLEMASL----NEKDCGLDIIAEN----LRLAS 413
               +      + +L     E     +I A +    LR+A 
Sbjct: 176 EAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAI 216



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 32/263 (12%)

Query: 93  NGILEELAKMPNLRLANPG--EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM 150
           + +L  +     +  A+    E  RR+ +   +   +AE+        +E     + +  
Sbjct: 84  DAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKAEARG------SEAGMYDAFQLG 137

Query: 151 SGELSSLYGQ-------WIDKLTHIRSF--IEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
            GE   +  +         D +  +     + A+    E  D     +         +++
Sbjct: 138 LGEPCPISAEHGQGMPDLRDAIVELLGEERVFAEERQEEAADEVFTPAAVGALVGDDIED 197

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
             +  I      + +R    I I+G  NAGKS+L N +  +D  +     G TRD ++ D
Sbjct: 198 PDAEEIPAYDATKPLR----IAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISAD 253

Query: 262 LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE----- 313
            +  G  +K+ DTAG+R    +    EK  +      +  A++++++ +     E     
Sbjct: 254 WEWHGRKIKLFDTAGMRRKARVQEKLEKLSVADGLRAIRFAEVVIIVLDATIPFEKQDLQ 313

Query: 314 ---ISFPKNIDFIFIGTKSDLYS 333
              +   +    +    K DL  
Sbjct: 314 IADLIIREGRAPVIAFNKWDLIE 336


>gi|237725292|ref|ZP_04555773.1| GTP-binding protein engA [Bacteroides sp. D4]
 gi|229436558|gb|EEO46635.1| GTP-binding protein engA [Bacteroides dorei 5_1_36/D4]
          Length = 437

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 32/195 (16%)

Query: 210 GKLGEII--RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            K GE +   +  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+
Sbjct: 164 SKEGEELLDEDIPRFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYEKFGF 223

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISF 316
              + DTAGIR+ + +    E   + R+   +EN+D+ +L+ + +   E        +  
Sbjct: 224 DFYLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENSDVCILMLDASRGIEGQDLNIFSLIQ 283

Query: 317 PKNIDFIFIGTKSDLYST-------------------YTEEYDHLISSFTGEGLEELINK 357
                 + +  K DL                      + +      S+ T + + +++  
Sbjct: 284 RNQKGLVVVVNKWDLVENKDAKVMKTYEEAIRSRLAPFVDFPIIFASALTKQRIFKVLET 343

Query: 358 IKSILSNKFKKLPFS 372
            K +   +  ++P +
Sbjct: 344 AKEVYQARTTRIPTA 358



 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G+   + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
             +DD+ E+E  K+  L ++ AD+IL + ++         +   I        I +  K+
Sbjct: 62  VNSDDVFEEEIRKQVSLAIDEADVILFVVDVVNGVTDLDMAVASILRRTKKPVIMVANKT 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D   L     E Y       + IS+ +G G  EL++ +    S + ++L
Sbjct: 122 DNNELQYNAAEFYKLGLGDPYCISALSGSGTGELLDLVVGKFSKEGEEL 170


>gi|224535783|ref|ZP_03676322.1| hypothetical protein BACCELL_00647 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522603|gb|EEF91708.1| hypothetical protein BACCELL_00647 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 437

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 25/190 (13%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +  EI+     +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+  
Sbjct: 166 EADEILDEDIPRFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDF 225

Query: 270 KISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPK 318
            + DTAGIR+ + +    E   + R+   +ENAD+ +L+ +     E        +    
Sbjct: 226 YLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENADVCILMLDATRGVESQDLNIFSLIQKN 285

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSH 376
               + +  K DL               T + ++   + I+S       F  +  S  + 
Sbjct: 286 AKGLVVVVNKWDLVQD-----------KTVKVMKTFEDAIRSRFAPFVDFPIIFGSALTK 334

Query: 377 KRHLYHLSQT 386
           +R L  L + 
Sbjct: 335 QRILKVLEEA 344



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G    + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGKEFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +DDI E+E  K+  + V+ AD+IL + ++ +           I        + I  K+
Sbjct: 62  VNSDDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDMQVAAILRRTQKPVLLIANKT 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D   L     E Y       + IS+ TG G  ++++ I      +  ++
Sbjct: 122 DNGELQYNAPEFYKLGLGDPYCISAMTGSGTGDMMDLIVGTFKKEADEI 170


>gi|15837067|ref|NP_297755.1| GTP-binding protein EngA [Xylella fastidiosa 9a5c]
 gi|26006743|sp|Q9PG37|DER_XYLFA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|9105311|gb|AAF83275.1|AE003896_12 GTP-binding protein [Xylella fastidiosa 9a5c]
          Length = 465

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 96/267 (35%), Gaps = 41/267 (15%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF-----------SSKEVLND 195
           +      L      W+ KL+     +   +D   +  V +             S      
Sbjct: 92  VREGVSALDDDILAWLRKLSQPTLLVINKIDGVSDATVHSEFAHYGFSDVVPVSAAHRQG 151

Query: 196 ILFLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  L   + + + +  +GE +        I  +G  N GKS+L N L  ++  IV+D+PG
Sbjct: 152 LDDLIEQVLAWLPERGIGEALDEDSERIHIAFVGRPNVGKSTLVNRLLGEERMIVSDVPG 211

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN 309
           TTRD +T+DL+ +    ++ DTAG+R     ++ VEK    +T   +E   + +LL +  
Sbjct: 212 TTRDSITVDLERDECRYRLVDTAGLRRKSKVEEAVEKFSAFKTLQVIEQCQVAVLLLDAG 271

Query: 310 SK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISS 345
                                +    K D   TY  E                    +S+
Sbjct: 272 EGVTDQDATVLAAILDAGKALVVAMNKWDGLGTYQREQAEDLLSRKLGFVNWAEVVRLSA 331

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS 372
             G GL EL   I     +  ++   S
Sbjct: 332 KHGSGLRELFRAIHRAHVSALRQFSTS 358



 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280
           + ++G  N GKS+LFNAL     A+V D PG TRD       ++G     + DT G+   
Sbjct: 5   VALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGGMVGK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDLY 332
           +D +     ++  L    AD++L +  +           +++ +      + +  K D  
Sbjct: 65  EDGLAGATARQARLAAAEADVVLFVVNVREGVSALDDDILAWLRKLSQPTLLVINKIDGV 124

Query: 333 STYT--EEYDHL-------ISSFTGEGLEELINKIKSILSNK 365
           S  T   E+ H        +S+   +GL++LI ++ + L  +
Sbjct: 125 SDATVHSEFAHYGFSDVVPVSAAHRQGLDDLIEQVLAWLPER 166


>gi|197303325|ref|ZP_03168365.1| hypothetical protein RUMLAC_02048 [Ruminococcus lactaris ATCC
           29176]
 gi|197297609|gb|EDY32169.1| hypothetical protein RUMLAC_02048 [Ruminococcus lactaris ATCC
           29176]
          Length = 300

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 90/216 (41%), Gaps = 22/216 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   +   D
Sbjct: 3   ENFKSGF-VTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVD 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFI 325
           T GI +  + + +  +      +   D++L L E         K  I   K      I +
Sbjct: 62  TPGIHKAKNKLGEYMVNIAERSLNEVDVVLWLVEPSNFIGAGEKHIIEQLKKVKTPVILV 121

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D            TY +EYD      +S+ TG+  +EL+  I + L    +     
Sbjct: 122 INKIDMVKREEILAFIDTYRKEYDFAEIVPVSARTGDNTDELVKVILNYLPYGPQFYDED 181

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
             + +     +++ +R   +  LNE+      +A +
Sbjct: 182 TVTDQPERQIVAELIREKALHCLNEEIPHGIAVAID 217


>gi|51246791|ref|YP_066675.1| GTP-binding protein (EngA) [Desulfotalea psychrophila LSv54]
 gi|50877828|emb|CAG37668.1| Probable GTP-binding protein (EngA) [Desulfotalea psychrophila
           LSv54]
          Length = 446

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 86/217 (39%), Gaps = 30/217 (13%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVT 248
            +       L + +S  I    + + + +G  K+   G  N GKSS+ N +  +D  IV+
Sbjct: 151 ADHTFGFNTLMDALSETIEASTMSQDLPDGTVKVAFFGRPNVGKSSMINRILGEDRMIVS 210

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           +I GTTRD +   L    Y   + DTAGIR   +T + +EK  I ++   +E  D+ ++L
Sbjct: 211 EISGTTRDSVDTLLTHGNYSYLLIDTAGIRRKGKTTEKLEKFSILKSLGALERCDVAVIL 270

Query: 306 KEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------------- 341
            + +             +  +    I +  K DL     +  D                 
Sbjct: 271 IDADEGITEQDTKVIGYALDQGRGLIILVNKWDLLEGDKKRQDEVLAEVGRQLPFIGFAP 330

Query: 342 --LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
              +S+ +G G++ L   I S+      +   S  + 
Sbjct: 331 LLTVSALSGFGIKRLFPVIGSVYRQYSAQFSTSTINR 367



 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 9/118 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+LFN + K   A+V   PG TRD     +      + + DT GI +  
Sbjct: 9   VALVGRPNVGKSTLFNRITKSRNALVDPTPGVTRDRQYERVVWNNRAMILVDTGGIDDNP 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD 330
           +D++      +    +E AD++L L +             +I          +  K D
Sbjct: 69  EDVLVPHIRDQALAAIEEADIVLFLMDGREGLTPADYEVVDILRRAKKPVYHVINKID 126


>gi|15674498|ref|NP_268672.1| GTP-binding protein EngA [Streptococcus pyogenes M1 GAS]
 gi|19745453|ref|NP_606589.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS8232]
 gi|50913661|ref|YP_059633.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS10394]
 gi|56808746|ref|ZP_00366464.1| COG1160: Predicted GTPases [Streptococcus pyogenes M49 591]
 gi|71910101|ref|YP_281651.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS5005]
 gi|94987918|ref|YP_596019.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS9429]
 gi|94991802|ref|YP_599901.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS2096]
 gi|209558845|ref|YP_002285317.1| GTP-binding protein EngA [Streptococcus pyogenes NZ131]
 gi|54037054|sp|P64065|DER_STRP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|54040977|sp|P64064|DER_STRP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|68052093|sp|Q5XDR3|DER_STRP6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225861|sp|Q1JDF1|DER_STRPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225862|sp|Q1JNC4|DER_STRPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238058978|sp|B5XJW0|DER_STRPZ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|13621599|gb|AAK33393.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes M1
           GAS]
 gi|19747567|gb|AAL97088.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes
           MGAS8232]
 gi|50902735|gb|AAT86450.1| GTP-binding protein [Streptococcus pyogenes MGAS10394]
 gi|71852883|gb|AAZ50906.1| GTP-binding protein [Streptococcus pyogenes MGAS5005]
 gi|94541426|gb|ABF31475.1| GTP-binding protein [Streptococcus pyogenes MGAS9429]
 gi|94545310|gb|ABF35357.1| GTP-binding protein [Streptococcus pyogenes MGAS2096]
 gi|209540046|gb|ACI60622.1| GTP-binding protein EngA [Streptococcus pyogenes NZ131]
          Length = 436

 Score =  109 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 66  APFMEQIKHQAQIAMEEADVIVFVVSGKEGVTDADEYVSKILYRTNTPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  +  +    I 
Sbjct: 126 MRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPVEEAEENDDII 175



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  +  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLP-VEEAEENDDIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D +G    + DTAG+R++  I    EK  + R    ++ +D++L++  IN+++ 
Sbjct: 213 IDTHFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       T      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTIDKDNHTVAKWEADIRDQFQFLTYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++ K++P ++ +
Sbjct: 331 LTKQRLNKLPDLIKRISESQNKRIPSAVLN 360


>gi|257898848|ref|ZP_05678501.1| GTP-binding protein engA [Enterococcus faecium Com15]
 gi|257836760|gb|EEV61834.1| GTP-binding protein engA [Enterococcus faecium Com15]
          Length = 436

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
            K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      E G    + DTAG+R
Sbjct: 175 IKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSENGQKFLMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           +   +    EK  + R    ++ +D++L++  +N+++ I          +       I +
Sbjct: 235 KRGKVYENTEKYSVMRAMRAIDRSDIVLMV--LNAEEGIREQDKRVAGYAHEAGRGIIIV 292

Query: 326 GTKSDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K DL    T                        +S+ T + LE L   I+ +  N+  
Sbjct: 293 VNKWDLVKKETNTMRDFEQEIRDEFRYLDYAPIVFVSAVTKQRLERLPEMIEQVSMNQNL 352

Query: 368 KLPFSIPS 375
           ++  ++ +
Sbjct: 353 RISSAVLN 360



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + +E AD+I+ +               +I +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIEEADVIICVVSGREGVTDADEMVAKILYRSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
              + Y+           +S   G G+ +++++     
Sbjct: 126 MRNDIYEFYSLGLGDPYPVSGSHGLGIGDILDEAVKYF 163


>gi|322392688|ref|ZP_08066148.1| ribosome-associated GTPase EngA [Streptococcus peroris ATCC 700780]
 gi|321144680|gb|EFX40081.1| ribosome-associated GTPase EngA [Streptococcus peroris ATCC 700780]
          Length = 436

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 89/210 (42%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++ Q +  E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPQ-EFEEENPDVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D +G    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ 
Sbjct: 213 IDTHFTDADGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                              +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEDDIREQFQYLPYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPEMIKQISESQNTRIPSAVLN 360



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      I    E    K    +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              E YD           ISS  G G  ++++ I   L  +F++    + 
Sbjct: 126 MRNEIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLPQEFEEENPDVI 175


>gi|150003043|ref|YP_001297787.1| GTP-binding protein EngA [Bacteroides vulgatus ATCC 8482]
 gi|254883681|ref|ZP_05256391.1| GTP-binding protein engA [Bacteroides sp. 4_3_47FAA]
 gi|294775667|ref|ZP_06741175.1| ribosome-associated GTPase EngA [Bacteroides vulgatus PC510]
 gi|319642181|ref|ZP_07996841.1| GTP-binding protein engA [Bacteroides sp. 3_1_40A]
 gi|166224306|sp|A6KXK1|DER_BACV8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|149931467|gb|ABR38165.1| putative phosphoglycerate dehydrogenase [Bacteroides vulgatus ATCC
           8482]
 gi|254836474|gb|EET16783.1| GTP-binding protein engA [Bacteroides sp. 4_3_47FAA]
 gi|294450511|gb|EFG19003.1| ribosome-associated GTPase EngA [Bacteroides vulgatus PC510]
 gi|317386167|gb|EFV67086.1| GTP-binding protein engA [Bacteroides sp. 3_1_40A]
          Length = 437

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 18/169 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277
           G  + I+G  N GKS+LFN L K   AIV +  GTTRD      +  G+   + DT G +
Sbjct: 2   GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWV 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKS 329
             +DD+ E+E  K+  L ++ AD+IL + ++         +   I        I +  K+
Sbjct: 62  VNSDDVFEEEIRKQVSLAIDEADVILFVVDVVNGVTDLDMAVASILRRTKKPVIMVANKT 121

Query: 330 D---LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D   L     E Y       + IS+ +G G  EL++ +    S + ++L
Sbjct: 122 DNNELQYNAAEFYKLGLGDPYCISALSGSGTGELLDLVVGKFSKEGEEL 170



 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 82/195 (42%), Gaps = 32/195 (16%)

Query: 210 GKLGEII--RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            K GE +   +  +  ++G  NAGKSS+ NA   +D  IVT+I GTTRD +    +  G+
Sbjct: 164 SKEGEELLDEDIPRFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYEKFGF 223

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISF 316
              + DTAGIR+ + +    E   + R+   +EN+D+ +L+ +     E        +  
Sbjct: 224 DFYLVDTAGIRKKNKVSEDLEYYSVIRSIRSIENSDVCILMLDATRGIEGQDLNIFSLIQ 283

Query: 317 PKNIDFIFIGTKSDLYST-------------------YTEEYDHLISSFTGEGLEELINK 357
                 + +  K DL                      + +      S+ T + + +++  
Sbjct: 284 RNQKGLVVVVNKWDLVENKNAKVMKTYEEAIRSRLAPFVDFPIIFASALTKQRIFKVLET 343

Query: 358 IKSILSNKFKKLPFS 372
            K +   +  ++P +
Sbjct: 344 AKEVYQARTTRIPTA 358


>gi|257877995|ref|ZP_05657648.1| GTP-binding protein engA [Enterococcus faecium 1,230,933]
 gi|257881218|ref|ZP_05660871.1| GTP-binding protein engA [Enterococcus faecium 1,231,502]
 gi|257884882|ref|ZP_05664535.1| GTP-binding protein engA [Enterococcus faecium 1,231,501]
 gi|257889806|ref|ZP_05669459.1| GTP-binding protein engA [Enterococcus faecium 1,231,410]
 gi|257892257|ref|ZP_05671910.1| GTP-binding protein engA [Enterococcus faecium 1,231,408]
 gi|258616518|ref|ZP_05714288.1| GTP-binding protein EngA [Enterococcus faecium DO]
 gi|260559046|ref|ZP_05831232.1| GTP-binding protein engA [Enterococcus faecium C68]
 gi|261207580|ref|ZP_05922265.1| GTP-binding protein engA [Enterococcus faecium TC 6]
 gi|289565092|ref|ZP_06445545.1| ribosome-associated GTPase EngA [Enterococcus faecium D344SRF]
 gi|293556739|ref|ZP_06675302.1| ribosome-associated GTPase EngA [Enterococcus faecium E1039]
 gi|293563397|ref|ZP_06677846.1| GTP-binding protein EngA [Enterococcus faecium E1162]
 gi|294614846|ref|ZP_06694741.1| GTP-binding protein EngA [Enterococcus faecium E1636]
 gi|294618677|ref|ZP_06698211.1| GTP-binding protein EngA [Enterococcus faecium E1679]
 gi|294621937|ref|ZP_06701085.1| GTP-binding protein EngA [Enterococcus faecium U0317]
 gi|314938008|ref|ZP_07845318.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a04]
 gi|314942006|ref|ZP_07848867.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133C]
 gi|314948741|ref|ZP_07852113.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0082]
 gi|314951759|ref|ZP_07854798.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133A]
 gi|314991834|ref|ZP_07857292.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133B]
 gi|314995875|ref|ZP_07860962.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a01]
 gi|257812223|gb|EEV40981.1| GTP-binding protein engA [Enterococcus faecium 1,230,933]
 gi|257816876|gb|EEV44204.1| GTP-binding protein engA [Enterococcus faecium 1,231,502]
 gi|257820720|gb|EEV47868.1| GTP-binding protein engA [Enterococcus faecium 1,231,501]
 gi|257826166|gb|EEV52792.1| GTP-binding protein engA [Enterococcus faecium 1,231,410]
 gi|257828636|gb|EEV55243.1| GTP-binding protein engA [Enterococcus faecium 1,231,408]
 gi|260074803|gb|EEW63119.1| GTP-binding protein engA [Enterococcus faecium C68]
 gi|260077963|gb|EEW65669.1| GTP-binding protein engA [Enterococcus faecium TC 6]
 gi|289163099|gb|EFD10946.1| ribosome-associated GTPase EngA [Enterococcus faecium D344SRF]
 gi|291592308|gb|EFF23922.1| GTP-binding protein EngA [Enterococcus faecium E1636]
 gi|291595060|gb|EFF26403.1| GTP-binding protein EngA [Enterococcus faecium E1679]
 gi|291598486|gb|EFF29555.1| GTP-binding protein EngA [Enterococcus faecium U0317]
 gi|291601071|gb|EFF31360.1| ribosome-associated GTPase EngA [Enterococcus faecium E1039]
 gi|291604658|gb|EFF34143.1| GTP-binding protein EngA [Enterococcus faecium E1162]
 gi|313589979|gb|EFR68824.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a01]
 gi|313593645|gb|EFR72490.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133B]
 gi|313596038|gb|EFR74883.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133A]
 gi|313599258|gb|EFR78103.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133C]
 gi|313642583|gb|EFS07163.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a04]
 gi|313644807|gb|EFS09387.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0082]
          Length = 436

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
            K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      E G    + DTAG+R
Sbjct: 175 IKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           +   +    EK  + R    ++ +D++L++  +N+++ I          +       I +
Sbjct: 235 KRGKVYENTEKYSVMRAMRAIDRSDIVLMV--LNAEEGIREQDKRVAGYAHEAGRGIIIV 292

Query: 326 GTKSDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K DL    T                        +S+ T + LE L   I+ +  N+  
Sbjct: 293 VNKWDLVKKETNTMRDFEQEIRDEFRYLDYAPIVFVSAVTKQRLERLPEMIEQVSMNQNL 352

Query: 368 KLPFSIPS 375
           ++  ++ +
Sbjct: 353 RISSAVLN 360



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + +E AD+I+ +               +I +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIEEADVIICVVSGREGVTDADEMVAKILYRSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
              + Y+           +S   G G+ +++++     
Sbjct: 126 MRNDIYEFYSLGLGDPYPVSGSHGLGIGDILDEAVKYF 163


>gi|225018722|ref|ZP_03707914.1| hypothetical protein CLOSTMETH_02672 [Clostridium methylpentosum
           DSM 5476]
 gi|224948450|gb|EEG29659.1| hypothetical protein CLOSTMETH_02672 [Clostridium methylpentosum
           DSM 5476]
          Length = 440

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 112/319 (35%), Gaps = 58/319 (18%)

Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           E+  R F       +E ES  D+I S+   Q  L+++    ++  L     D +T     
Sbjct: 47  EWCSRPFLLVDTGGIEPES-NDIILSQMRRQAELAIQSA--QVIILVTDLRDGVTATDQD 103

Query: 172 IEADLD--------------------------FSEEEDVQNFSSKEVLNDILFLKNDISS 205
           + A L                           ++         S    +    L + +  
Sbjct: 104 VAAMLIKSGKPVVLCVNKCDSVGAPPIGIYEFYNLGLGEPIAVSAAHGHGTGDLLDAVFE 163

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           H+ +    E      K+ I+G  N GKSSL N +A ++  IV+DI GTTRD +   +   
Sbjct: 164 HMPEDAEAEYAEESIKVAIVGKPNVGKSSLINKIAGEERVIVSDIAGTTRDAVDTVVTRG 223

Query: 266 GYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEI 314
                + DTAGIR      D +E+  + R  + V+ AD+ +++ +         +     
Sbjct: 224 EDQFVLIDTAGIRRKSKVLDTIERYSVLRAHMAVDRADVCVIIIDATVGFTEQDSKIAGY 283

Query: 315 SFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTGEGLEELIN 356
           +  +    I    K D     T                        IS+ TG+ L+ L  
Sbjct: 284 AHEQGKGCIIAINKWDAVEKDTHTMNEFTKKLQTDFSFMSYAPFVFISAKTGQRLDNLFT 343

Query: 357 KIKSILSNKFKKLPFSIPS 375
            IK +      ++   + +
Sbjct: 344 LIKKVKEQNSMRISTGMLN 362



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + ++IV D PG TRD +  + +       + DT GI  E+
Sbjct: 6   VAVVGRPNVGKSTLFNKLIGRRMSIVDDTPGVTRDRIYSECEWCSRPFLLVDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
           +DI+  +  ++  L +++A +I+L+ ++             +        +    K D  
Sbjct: 66  NDIILSQMRRQAELAIQSAQVIILVTDLRDGVTATDQDVAAMLIKSGKPVVLCVNKCDSV 125

Query: 331 ------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILS 363
                 +Y  Y         +S+  G G  +L++ +   + 
Sbjct: 126 GAPPIGIYEFYNLGLGEPIAVSAAHGHGTGDLLDAVFEHMP 166


>gi|154686532|ref|YP_001421693.1| GTP-binding protein EngA [Bacillus amyloliquefaciens FZB42]
 gi|166224304|sp|A7Z636|DER_BACA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|154352383|gb|ABS74462.1| EngA [Bacillus amyloliquefaciens FZB42]
          Length = 436

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 30/228 (13%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   T+    L++  +         +    +    +     L F 
Sbjct: 91  NGREGVTSADEEVAKILYRTKKPVVLAVNKLDNT------EMRANIYDFYA-----LGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   +    L D   L +  + H       +   +  +  ++G  N GKSSL NA+
Sbjct: 140 EPYPISG-THGLGLGD---LLDACAEHFKNIPETKYSDDVVQFCLIGRPNVGKSSLVNAM 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+++ GTTRD +            I DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEERVIVSNVAGTTRDAVDTAFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYST 334
           + +D++ ++  +N+++ I          +       + I  K D    
Sbjct: 256 DRSDVVGVV--LNAEEGILEQDKRIAGYAHEAGKAVVIIVNKWDAVDK 301



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + S  E    I +      +    K D   
Sbjct: 66  EPFLTQIRQQAEIAMDEADVIIFMVNGREGVTSADEEVAKILYRTKKPVVLAVNKLDNTE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
                YD           IS   G GL +L++       N
Sbjct: 126 MRANIYDFYALGFGEPYPISGTHGLGLGDLLDACAEHFKN 165


>gi|21909785|ref|NP_664053.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS315]
 gi|28896522|ref|NP_802872.1| GTP-binding protein EngA [Streptococcus pyogenes SSI-1]
 gi|26006710|sp|Q8K8J8|DER_STRP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|21903970|gb|AAM78856.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes
           MGAS315]
 gi|28811776|dbj|BAC64705.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes
           SSI-1]
          Length = 436

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 66  APFMEQIKHQAQIAMEEADVIVFVVSGKEGVTDADEYVSKILYRTNTPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  +  +    I 
Sbjct: 126 MRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPVEEAEENDDII 175



 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  +  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLP-VEEAEENDDIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D +G    + DTAG+R++  I    EK  + R    ++ +D++L++  IN+++ 
Sbjct: 213 IDTHFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       T      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDAIDKDNHTVAKWEADIRDQFQFLTYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++ K++P ++ +
Sbjct: 331 LTKQRLNKLPDLIKRISESQNKRIPSAVLN 360


>gi|148265178|ref|YP_001231884.1| GTP-binding protein Era [Geobacter uraniireducens Rf4]
 gi|259645947|sp|A5G693|ERA_GEOUR RecName: Full=GTPase Era
 gi|146398678|gb|ABQ27311.1| GTP-binding protein Era [Geobacter uraniireducens Rf4]
          Length = 297

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  R+G+ + I+G  N GKS+L N +    + I +D P TTR+ +    +L G  +   D
Sbjct: 4   KQFRSGF-VSIIGRPNVGKSTLLNRILGDKIVITSDKPQTTRNRIQGIHNLPGCQMVFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
           T GI      + K  +      ++  D+IL L E ++K         E+    +   + +
Sbjct: 63  TPGIHRAKSKLNKYMVDVALSSIKEVDVILFLVEADAKPANQEGMILELLANADAPVLLV 122

Query: 326 GTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL +              Y       +S+ +G+G+E L+  +   +       P  
Sbjct: 123 INKIDLVAKEALLERIAAYAALYPFREIVPVSALSGDGVERLVEVVHGFIPAGPPYFPDD 182

Query: 373 IPSHKRHLYHLSQTVR 388
           I +     + +++ +R
Sbjct: 183 ILTDLPERFIVAEMIR 198


>gi|327490071|gb|EGF21859.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1058]
          Length = 436

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + +      E++ N    K  ++G  N GKSSL NA+  ++  I + + GTTRD +  
Sbjct: 156 LDAIVENLPNEEVVENPDMIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
              D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ I  
Sbjct: 216 VFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       + +  K D                       +      +S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L  L + IK I  ++  ++P ++ +
Sbjct: 334 QRLHMLPDMIKQISQSQNTRIPSAVLN 360



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 17/161 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +            I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
              E +D           +SS  G G  ++++ I   L N+
Sbjct: 126 MRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNE 166


>gi|297205894|ref|ZP_06923289.1| ribosome-associated GTPase EngA [Lactobacillus jensenii JV-V16]
 gi|297149020|gb|EFH29318.1| ribosome-associated GTPase EngA [Lactobacillus jensenii JV-V16]
          Length = 439

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  + +AIV D PG TRD         G+   I DT GI    
Sbjct: 9   VAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGGITWEG 68

Query: 282 DIVEKEGIKRTFLEVENADLI-------LLLKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
             +E E   +  + +E AD+I       L L +++ +   I +  +   I    K+D   
Sbjct: 69  GRIEDEIRAQADIAMEEADVIVMITSVALHLTDLDERIARILYRSSKPVILAVNKADNPE 128

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              + YD           ISS  G G+ +L++ +      +       
Sbjct: 129 QRADIYDFYSLGLGDPIPISSTHGTGIGDLLDAVVENFPPEADTKDED 176



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 30/190 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAG 276
           +     ++G  N GKSS+ NA+  +   IV +  GTTRD +    +  +G   ++ DTAG
Sbjct: 176 DEIAFSVIGRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVDTPFVAEDGTKFRMIDTAG 235

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           IR    +    EK  + R    ++ +D++ L+ + ++            +       I +
Sbjct: 236 IRRRGKVYEKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQDKHVAGFAHDAGRGMIIV 295

Query: 326 GTKSDLYST-----------YTEEY-------DHLISSFTGEGLEELINKIKSILSNKFK 367
             K DL                EE+          +S+ TG+ L++L + IK +  N+ +
Sbjct: 296 VNKWDLPKKDSNSAKDFTRVIREEFQYLDYAPIIFVSAKTGKNLDQLPDLIKEVAENQSQ 355

Query: 368 KLPFSIPSHK 377
           ++  S+ +  
Sbjct: 356 RIQSSVLNDM 365


>gi|254701190|ref|ZP_05163018.1| GTP-binding protein EngA [Brucella suis bv. 5 str. 513]
 gi|261751727|ref|ZP_05995436.1| GTP-binding protein engA [Brucella suis bv. 5 str. 513]
 gi|261741480|gb|EEY29406.1| GTP-binding protein engA [Brucella suis bv. 5 str. 513]
          Length = 483

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 32/221 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G+ + I+G  N GKS+LFN L  + +A+V D+PG TRD    D  L     ++ DTAG+ 
Sbjct: 2   GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61

Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           E  +D +E     +T   +  AD +L + +  +          E         + +  K+
Sbjct: 62  EAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKA 121

Query: 330 DLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +   +    YD           IS+  G+G+ +L + I   L          + + +R  
Sbjct: 122 EARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVEFL------GEERVFAEERQE 175

Query: 381 YHLSQTVRYLEMASL----NEKDCGLDIIAEN----LRLAS 413
               +      + +L     E     +I A +    LR+A 
Sbjct: 176 EAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAI 216



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 95/263 (36%), Gaps = 32/263 (12%)

Query: 93  NGILEELAKMPNLRLANPG--EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM 150
           + +L  +     +  A+    E  RR+ +   +   +AE+        +E     + +  
Sbjct: 84  DAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKAEARG------SEAGMYDAFQLG 137

Query: 151 SGELSSLYGQ-------WIDKLTHIRSF--IEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
            GE   +  +         D +        + A+    E  D     +         +++
Sbjct: 138 LGEPCPISAEHGQGMPDLRDAIVEFLGEERVFAEERQEEAADEVFTPAAVGALVGDDIED 197

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
             +  I      + +R    I I+G  NAGKS+L N +  +D  +     G TRD ++ D
Sbjct: 198 PDAEEIPAYDATKPLR----IAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISAD 253

Query: 262 LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE----- 313
            +  G  +K+ DTAG+R    +    EK  +      +  A++++++ +     E     
Sbjct: 254 WEWHGRKIKLFDTAGMRRKARVQEKLEKLSVADGLRAIRFAEVVIIVLDATIPFEKQDLQ 313

Query: 314 ---ISFPKNIDFIFIGTKSDLYS 333
              +   +    +    K DL  
Sbjct: 314 IADLIIREGRAPVIAFNKWDLIE 336


>gi|255505344|ref|ZP_05345588.3| ribosome-associated GTPase EngA [Bryantella formatexigens DSM
           14469]
 gi|255268481|gb|EET61686.1| ribosome-associated GTPase EngA [Bryantella formatexigens DSM
           14469]
          Length = 442

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 9/122 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA ++++IV D PG TRD +  D++   Y   + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGENISIVKDTPGVTRDRIYADVEWLNYQFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D++  +  ++  + ++ AD+I+ + ++            ++        +    K+D Y
Sbjct: 66  SDVILSQMREQAQIAIDTADVIIFMVDVRQGLIDADSKVADMLRRSRKPVVLAVNKADNY 125

Query: 333 ST 334
             
Sbjct: 126 EK 127



 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 34/223 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +  + ++    E   +  +I ++G  N GKSS+ N L  ++  IV+DI GTTRD 
Sbjct: 156 DMLDVVVGYFTENGQEEREDDRPRIAVVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILL-------LKE 307
           +   +   G      DTAG+R  + I    E+  I RT   V+ AD++++       + E
Sbjct: 216 IDTAITWGGREYVFIDTAGLRRKNKIKEELERYSIIRTVTAVDRADVVVVVIDAVEGVTE 275

Query: 308 INSK-KEISFPKNIDFIFIGTKSDLYS-------TYTEEY-----------DHLISSFTG 348
            ++K   I+  +    + +  K D           YTE+               +S+ TG
Sbjct: 276 QDAKIAGIAHDRGKGILVVVNKWDAIEKDDKTVYKYTEKIRETLSFMPYAEIMFVSAQTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
           + L +L + I  I+ N+  ++   + +       LS+ V   +
Sbjct: 336 QRLAKLFDMIDMIVQNQSMRIATGVLN-----EILSEAVALQQ 373


>gi|160872137|ref|ZP_02062269.1| GTP-binding protein EngA [Rickettsiella grylli]
 gi|159120936|gb|EDP46274.1| GTP-binding protein EngA [Rickettsiella grylli]
          Length = 455

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 79/202 (39%), Gaps = 32/202 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           + I+   K+ I+G  N GKS+L N +  ++  IV D PGTTRD +  D++  G      D
Sbjct: 192 KAIKPKIKVAIVGKPNVGKSTLLNRILGEERVIVFDQPGTTRDSIANDIEYRGQHYIFID 251

Query: 274 TAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDF 322
           TAGIR      E   K  + ++   +E + ++LLL +     S++++             
Sbjct: 252 TAGIRRKSKTWEAIDKFSVIKSLQAIEASHVVLLLIDAQEGISEQDLHLLGFILESGKAV 311

Query: 323 IFIGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKF 366
           I    K D  S    +                    IS+  G G+  L   I+    +  
Sbjct: 312 IIAVNKWDGLSKDQRDQIKKDLDRRLQFISFAQVIFISALHGTGVGHLFTLIRQAYQSAT 371

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
           + L  S  +       L Q V 
Sbjct: 372 RNLSTSQLTR-----LLEQAVN 388



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 20/167 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            G  I +   IV++G  N GKSSLFN L K   A+V DIPG TRD L     +      +
Sbjct: 7   TGMTISSLPSIVLVGRPNVGKSSLFNRLTKTRQALVGDIPGLTRDRLYGRGIVGNRPFIV 66

Query: 272 SDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDF 322
            DT G+    +  +  +  ++    ++ AD +L L +             +   P N   
Sbjct: 67  IDTGGLTGCKEKNIAFQMEQQARNAIKEADHVLFLVDAREGLSLLDQQLIQQLRPFNKKI 126

Query: 323 IFIGTKSDLYSTYTEEYDH-----------LISSFTGEGLEELINKI 358
             +  KS+       + +            +IS+  G GL+ L+ K+
Sbjct: 127 TLVINKSEGLDAALLQSEFSPLGFRTSSLSIISAIHGYGLQTLMEKV 173


>gi|291519504|emb|CBK74725.1| ribosome-associated GTPase EngA [Butyrivibrio fibrisolvens 16/4]
          Length = 441

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+    Y   + DT GI  +T
Sbjct: 6   VAIVGRPNVGKSTLFNALAGERISIVKDTPGVTRDRIYADVSWLNYDFTMIDTGGIEPDT 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLY 332
           +DI+  +  ++  + ++ AD+I+ L ++    + S  K        +   I +  K D +
Sbjct: 66  NDIILSQMREQAQIAIDTADVIIFLVDVKQGLQDSDSKVADMLRRSHKPVILVVNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                +              +S+ +  G  ++++K+      +  +    
Sbjct: 126 ERDMADVYEFYNLGIGDPIPVSASSRLGFGDMLDKVVEYFPEQSGEEEED 175



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 85/234 (36%), Gaps = 35/234 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +  +  +    E   +  KI ++G  N GKSSL N L  ++  IV+DI GTTRD 
Sbjct: 156 DMLDKVVEYFPEQSGEEEEDDTPKIAVIGKPNVGKSSLINKLCGEERVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +          DTAG+R    I    E+  I R    VE AD+++++ +       
Sbjct: 216 VDTRVRYNHKDYIFIDTAGLRRKSKIKEDLERYSIVRAVASVEKADVVIIMIDATEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                  I+  +    I    K D                  + ++E   KI+ ILS   
Sbjct: 276 QDAKIAGIAHERGKGIIICVNKWDAIEK------------NDKTMKEHETKIRQILSFMP 323

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420
                 I         L +    ++    N            +R+A+  L +I 
Sbjct: 324 YASILFISVKSGQR--LGKIYETIDAVIENNS----------MRIATGVLNEIV 365


>gi|182418977|ref|ZP_02950233.1| GTP-binding protein EngA [Clostridium butyricum 5521]
 gi|237668464|ref|ZP_04528448.1| ribosome-associated GTPase EngA [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377260|gb|EDT74828.1| GTP-binding protein EngA [Clostridium butyricum 5521]
 gi|237656812|gb|EEP54368.1| ribosome-associated GTPase EngA [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 438

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 88/207 (42%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +  +       +      +I ++G  N GKSSL N L  +D  IV+++ GTTRD 
Sbjct: 155 DMLDRVVENFDSSIYEQDEDEYIRIAMIGKPNVGKSSLINKLLGEDRVIVSEVAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +  +L+ E     + DTAG+R      + +E+  + RT+  +E +D+ +L+ +       
Sbjct: 215 IDSELETEEGKFILIDTAGLRRKSKVKEEIERYSVVRTYAAIERSDVCILMIDAQEGITE 274

Query: 309 NSKKEISFPKNID--FIFIGTKSDLYSTYTEEYDH------------------LISSFTG 348
             +K I +   +    + I  K DL     +  D+                   IS+ TG
Sbjct: 275 QDEKIIGYAHEMRKAIMIIVNKWDLVEKDDKTLDNFKRDLQGKLKFINYAEYLFISALTG 334

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           +   +++   +    N  K++   I +
Sbjct: 335 QRTHKVLQMARKCYDNYNKRVSTGILN 361



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 73/169 (43%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN LA K ++IV D PG TRD +  + +   +   + DT GI  E 
Sbjct: 6   VAMVGRPNVGKSTLFNRLAGKRISIVQDTPGVTRDRVYAEAEWLTHTFTMIDTGGIEPER 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +DI+ ++  ++  + +E AD+I+ + +              +        + +  K D  
Sbjct: 66  NDIIVQQMRRQANIAIETADVIVFIVDGKEGLTAADHEVATMLRKSKKPVVLVVNKVDSL 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 ++            S+  G GL ++++++     +   +    
Sbjct: 126 KEEDNAWEFYNLGIGDPITISASQGLGLGDMLDRVVENFDSSIYEQDED 174


>gi|152995389|ref|YP_001340224.1| small GTP-binding protein [Marinomonas sp. MWYL1]
 gi|189037150|sp|A6VV10|DER_MARMS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|150836313|gb|ABR70289.1| small GTP-binding protein [Marinomonas sp. MWYL1]
          Length = 445

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 27/173 (15%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I   G +I ++G  N GKS+L N +  +D  +V D+PGTTRD + I          + DT
Sbjct: 175 IESRGIRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYVRNDKEYTLIDT 234

Query: 275 AGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFI 323
           AGIR      + VEK  I +    +++A++++++ + +    ++++             I
Sbjct: 235 AGIRRRKHVKEAVEKFSIVKALQAIQDANVVIVVIDSHENLVEQDLHMIGYVLDAGRGVI 294

Query: 324 FIGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKS 360
               K D       E+                 H IS+  G G+ +L + I+S
Sbjct: 295 IAINKWDGLKKDDREHIKSEVERRLGFVPYAKVHYISALHGTGVGDLYDTIES 347



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD    D  L  +   + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNQLTRSRDALVADYPGLTRDRKYGDGKLGEHEFIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEI----SFPKNIDFIFIGTKSD--- 330
             ++++  +++ L +E AD++L L +    +N   E+        N     +  K+D   
Sbjct: 65  QGIDEKMARQSLLAIEEADVVLFLVDGRHGLNPADEMIASHLRRSNKQVSLVVNKTDGIN 124

Query: 331 ----LYSTYTEEYD--HLISSFTGEGLEELINKI 358
               L   Y+  +   H I++  G+G+  LI+K+
Sbjct: 125 EDIALADFYSLGFGELHPIAASHGKGVHVLIDKV 158


>gi|300087240|ref|YP_003757762.1| ribosome-associated GTPase EngA [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299526973|gb|ADJ25441.1| ribosome-associated GTPase EngA [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 439

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 27/201 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   +   +         +I I G +N GKSSL N L  +D AIV+ +PGTTRD 
Sbjct: 157 ALLDRVVELLPAEEALPTEPERLRIAIAGRANVGKSSLLNTLVGEDRAIVSPVPGTTRDA 216

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +D     V + DTAGIR    I    E+  + R+   ++ AD++L++ +       
Sbjct: 217 VDTPIDFGTGGVVLIDTAGIRRRGRIERGVEEYSVIRSLHAIDRADVVLIVLDAGEPATA 276

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI---------------SSFTGEG 350
                   +  K    I +  KSDL       E+D  +               S+ +GEG
Sbjct: 277 QDTHIAGYAREKCRGLILVVNKSDLLKEVDMAEFDKNMASRFKFIPYARQINVSALSGEG 336

Query: 351 LEELINKIKSILSNKFKKLPF 371
           ++++I     +   + +++P 
Sbjct: 337 VDKIIPAAFEVQQERTRRIPT 357



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 19/163 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           + I+G  N GKS+L N L  +  AI  D+PGTTRD + + +   G    + DT G+   +
Sbjct: 7   VAIVGRQNVGKSTLLNRLTGRRQAITQDLPGTTRDRMYVPVSHSGREFLLVDTGGMAGGD 66

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDL 331
           T D+      ++  + +  A +I+ L E         +EI+      +   I +  K D 
Sbjct: 67  TGDVFTPAVNEQVRIAMREASVIVFLTEARFGLTPQDEEIAEEVRRSSKPVILVVNKVDN 126

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
                   +           +S++ G G + L++++  +L  +
Sbjct: 127 DRQGHHAIEFHALGMGEPVPVSAYHGRGTDALLDRVVELLPAE 169


>gi|94311040|ref|YP_584250.1| GTP-binding protein EngA [Cupriavidus metallidurans CH34]
 gi|123383733|sp|Q1LLJ5|DER_RALME RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|93354892|gb|ABF08981.1| GTP-binding protein [Cupriavidus metallidurans CH34]
          Length = 447

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 89/211 (42%), Gaps = 36/211 (17%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
               +  ++G KI I+G  N GKS+L N L  ++  I  D+PGTTRD + ++ +  G   
Sbjct: 171 ADQEDAGQHGVKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGKPY 230

Query: 270 KISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI- 325
            + DTAG+R+     + +EK  + +T   + +A++++LL +  ++++IS        FI 
Sbjct: 231 TLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLLLD--AQQDISEQDAHIAGFIV 288

Query: 326 ---------GTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKS 360
                      K D    +  +                  H +S+    G+  L+  +  
Sbjct: 289 ESGRALVVGVNKWDGLDGHQRDRVKHDLERKLQFLSFANIHFVSARERTGIGALLRSVDD 348

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
             +    KLP    +       L + V + +
Sbjct: 349 AYAAAMIKLPTPQITRV-----LQEAVEFQQ 374



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN + +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRMTRSRDALVADLPGLTRDRHYGEGRIGDRPFIVIDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            + +  E  K+T   V  AD+++ L +     + ++              +    K++  
Sbjct: 65  KEGIVAEMAKQTRQAVVEADVVIFLVDGRLGLAPQDRVIADYLRKTGRRVMLAINKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
              +   D           ISS  G+G+ EL+++   +   +  +L
Sbjct: 125 KYTSVAADFYELGMGDPYAISSTHGDGVRELVDEALDLAVQERPEL 170


>gi|237751648|ref|ZP_04582128.1| GTP-binding protein [Helicobacter bilis ATCC 43879]
 gi|229373014|gb|EEO23405.1| GTP-binding protein [Helicobacter bilis ATCC 43879]
          Length = 489

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 25/207 (12%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           + +N+       +S+  +Q    +   N   I I+G  N GKSSL NAL   + ++V++I
Sbjct: 182 DSINETSQDIESLSTISNQIDTTQNTDNTISIGIIGRPNVGKSSLLNALTNTNRSLVSNI 241

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEI 308
            GTT D +   +   GY +   DTAGIR    I  +EK  + RT   ++  D+ LL+ + 
Sbjct: 242 AGTTIDPVDEHIMYNGYNLTFVDTAGIRRRSKIEGIEKYALDRTQKMLQECDIALLVLDC 301

Query: 309 NSK--------KEISFPKNIDFIFIGTKSDLYSTYTE---------------EYDHLISS 345
           +++          I+    +  I +  K D+ S   +                     SS
Sbjct: 302 STEFVELDEKISSIASSNGLGVIVVFHKWDIRSKEFDSRLEVYKRKFKFLEYAPIITASS 361

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS 372
            T   ++EL  KI  +  +   ++P +
Sbjct: 362 TTHRHIKELKQKIIEVYQHFSLRIPTA 388


>gi|293568055|ref|ZP_06679393.1| GTP-binding protein EngA [Enterococcus faecium E1071]
 gi|291589276|gb|EFF21086.1| GTP-binding protein EngA [Enterococcus faecium E1071]
          Length = 436

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
            K  ++G  N GKSSL NA+  ++  IV+DI GTTRD +      E G    + DTAG+R
Sbjct: 175 IKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           +   +    EK  + R    ++ +D++L++  +N+++ I          +       I +
Sbjct: 235 KRGKVYENTEKYSVMRAMRAIDRSDIVLMV--LNAEEGIREQDKRVAGYAHEAGRGIIIV 292

Query: 326 GTKSDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K DL    T                        +S+ T + LE L   I+ +  N+  
Sbjct: 293 VNKWDLVKKETNTMRDFEQEIRDEFRYLDYAPIVFVSAVTKQRLERLPEMIEQVSMNQNL 352

Query: 368 KLPFSIPS 375
           ++  ++ +
Sbjct: 353 RISSAVLN 360



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + +E AD+I+ +               +I +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIEEADVIICVVSGREGVTDADEMVAKILYRSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
              + Y+           IS   G G+ +++++     
Sbjct: 126 MRNDIYEFYSLGLGDPYPISGSHGLGIGDILDEAVKYF 163


>gi|194246522|ref|YP_002004161.1| GTP-binding protein EngA [Candidatus Phytoplasma mali]
 gi|193806879|emb|CAP18308.1| conserved hypothetical protein [Candidatus Phytoplasma mali]
          Length = 441

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 17/156 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  N GKSS+FN + KK ++IV D PG TRD +    D       I DT GI  
Sbjct: 3   FKVAIVGRPNVGKSSIFNRILKKRLSIVHDKPGITRDRIYAQADWLTKSFDIIDTGGIEI 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSDL 331
            +    K+   +  L ++ A+LIL + +             +I        I +  K D 
Sbjct: 63  KNTPFLKQIKYQVQLAIDEANLILFVVDGRIFGNQGDIYISKILLKTKKPVILVINKIDN 122

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKI 358
               +  YD           +S+  G G+ +L++KI
Sbjct: 123 KDLLSNTYDFYSLGFKNIQIVSANHGIGIGDLLDKI 158



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 15/161 (9%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
           N  + + + +   I      E        K  +LG  N GKS+L N +  ++  +V+DI 
Sbjct: 146 NHGIGIGDLLDKIIFFHHKKEYFSKDSVIKFCLLGRPNVGKSTLTNMILSQERMVVSDIA 205

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE---GIKRTFLEVENADLILLLKEI 308
           GTT D +         + ++ DTAGI++   I EKE    + R    +  +D+  L+ + 
Sbjct: 206 GTTTDAVDTFFQKGEKIYQVIDTAGIKKRGKIYEKEDKYSVLRALSALGRSDIACLVLDA 265

Query: 309 N--------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           +        +   +    N   I I  K DL    TE+YD 
Sbjct: 266 DRGISEQDKNIAGLILEYNKACIIIVNKWDLIK--TEDYDQ 304


>gi|33865191|ref|NP_896750.1| GTP-binding protein EngA [Synechococcus sp. WH 8102]
 gi|41017009|sp|Q7U8G2|DER_SYNPX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|33638875|emb|CAE07172.1| putative GTP-binding protein [Synechococcus sp. WH 8102]
          Length = 455

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + + +             ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD 
Sbjct: 156 DLLDQVLTFLPPKDQEGDEEEPIQMAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDT 215

Query: 258 LTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +  ++  E    ++ DTAGI   R  +   E  GI R+F  ++ +D+ +L+ +       
Sbjct: 216 IDTNIVRENRPWRLVDTAGIRRRRSVNYGPEYFGINRSFKAIDRSDVCVLVIDALDGVTE 275

Query: 309 -NSKKEISFPKNIDFI-FIGTKSDLYST 334
            + +      ++      +  K D    
Sbjct: 276 QDQRLAGRIEEDGRACVVVVNKWDAVEK 303



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           D     E  ++  L +E A + +++ +          S  E    +    +    K +  
Sbjct: 66  DSEFLPEIREQAALAMEEASVAVVIVDGQQGITAADESIAEFLRSRPCPTLLAVNKCESP 125

Query: 333 ST----------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                             H IS+  G G  +L++++ + L  K ++   
Sbjct: 126 EQGLAMAAEFWSLGLGEPHPISAIHGVGTGDLLDQVLTFLPPKDQEGDE 174


>gi|296875953|ref|ZP_06900012.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC
           15912]
 gi|312868488|ref|ZP_07728688.1| ribosome biogenesis GTPase Der [Streptococcus parasanguinis F0405]
 gi|322390089|ref|ZP_08063624.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC
           903]
 gi|296433028|gb|EFH18816.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC
           15912]
 gi|311096233|gb|EFQ54477.1| ribosome biogenesis GTPase Der [Streptococcus parasanguinis F0405]
 gi|321143216|gb|EFX38659.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC
           903]
          Length = 436

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATAEWLNRKFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    I +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVTRILYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L N+ ++    I 
Sbjct: 126 MRNDIYDFYALGLGEPLPVSSVHGIGTGDVLDAIIENLPNETEEENPDII 175



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIIENLPN-ETEEENPDIIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D +G    + DTAG+R++  I    EK  + R    ++ +D++L++  IN+++ 
Sbjct: 213 IDTHFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTIEKDNHTMKQWEDDIRDQFQYLSYAPIVFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPEMIKQISESQNTRIPSAVLN 360


>gi|225620645|ref|YP_002721903.1| putative GTP-binding protein [Brachyspira hyodysenteriae WA1]
 gi|225215465|gb|ACN84199.1| putative GTP-binding protein [Brachyspira hyodysenteriae WA1]
          Length = 501

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 13/147 (8%)

Query: 208 SQGKLGEII--RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            Q +L E I  +    I I+G  NAGKS+L N L  KD +IV++I GTTRD +    + +
Sbjct: 224 KQYRLDEYIAQKKTINIAIVGKPNAGKSTLLNTLIGKDRSIVSNIAGTTRDAIDETFNFK 283

Query: 266 GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI-----NSKKEIS-- 315
           G  + + DTAGIR+  ++    E   + R    +E +D+ +L+ ++     +  K I+  
Sbjct: 284 GDDICLVDTAGIRKKKNVNTDVEYYSVNRAIKAIEASDVCILMLDVFEGLTDQDKTIANL 343

Query: 316 -FPKNIDFIFIGTKSDLYSTYTEEYDH 341
              +    +    K D+    T   D+
Sbjct: 344 IIERRKGIVIAANKWDIREKGTTWNDY 370



 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 18/170 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I ILG  N GKS+LFN  A +  +IV  + G TRD+      ++     + DT G+ +
Sbjct: 2   INIAILGRPNVGKSTLFNRFAGRRKSIVDPMAGVTRDISIAKTYIDDIEFNVFDTGGLLD 61

Query: 280 -TDDIVEKEGIKRTFL-EVENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSD 330
            +DD + ++  ++     +E++D++L L + +           I        I +  K D
Sbjct: 62  VSDDTLNEKVREKALKTALEDSDILLFLVDAHQSHPDDRHFINIIRKSGKPIILVINKVD 121

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
             S      +           IS+    G+++L  KI  +L      L  
Sbjct: 122 ADSHNNLVSEFYSLGIKDVSIISAEHNNGIDDLREKILEVLERNGFDLEA 171


>gi|260434834|ref|ZP_05788804.1| ribosome-associated GTPase EngA [Synechococcus sp. WH 8109]
 gi|260412708|gb|EEX06004.1| ribosome-associated GTPase EngA [Synechococcus sp. WH 8109]
          Length = 455

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +  S            ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD 
Sbjct: 156 ELLDQVLTFFSPKDQEGDEEEPIQMAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDT 215

Query: 258 LTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +   +  E    ++ DTAGI   R  +   E  GI R+F  +E +D+ +L+ +       
Sbjct: 216 IDTSIIRENRPWRLVDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTE 275

Query: 309 -NSKKEISFPKNIDFI-FIGTKSDLYST 334
            + +      ++      +  K D    
Sbjct: 276 QDQRLAGRIEEDGRACVVVVNKWDAVEK 303



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           D     E  ++  L +E A + L++ +          S  E         +    K +  
Sbjct: 66  DSEFLPEIREQAALALEEASVALVIVDGQQGLTAADESIAEFLRSHRCPTLLAVNKCESP 125

Query: 333 S---TYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                   E+        H IS+  G G  EL++++ +  S K ++   
Sbjct: 126 EQGLAMAGEFWSLGLGEPHPISAIHGAGTGELLDQVLTFFSPKDQEGDE 174


>gi|91203327|emb|CAJ72966.1| similar to GTP-binding protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 446

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 101/265 (38%), Gaps = 34/265 (12%)

Query: 121 GKIDLLEAESLADLISSETEMQRRLS--------MEGMSGELSSLYGQWIDKLTHIRSFI 172
           G + + +++ L + I  + E+    +        +      L  +  + +  +      I
Sbjct: 59  GGMGITDSDGLTEDIEMQIEVALAAADVVLFVVDVREGVTPLDRIVAERLRHVKKEVILI 118

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLK--------NDISSHISQGKLGEIIRNG----- 219
              +D  + E      ++    +   +         + +   IS   L E   N      
Sbjct: 119 ANKVDTPKFEHSMGEFNELGFGEPHPVSAIEGYGRSDLLDKIISLFPLQEPYDNTDSVPI 178

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  NAGKS+L N LA+K   IV+++PGTTRD + +  +++       DTAG+R+
Sbjct: 179 MKMAIVGKRNAGKSTLINTLARKQRVIVSEVPGTTRDSIDVKFEMDNKQFLAIDTAGVRK 238

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGT 327
                D +E   + R    +  AD++L L +   K           I   +      +  
Sbjct: 239 KSQVKDSIEFYSMARAERSIRRADVVLFLIDATLKISDVDKKLGAYIDLERKPCV-IVIN 297

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE 352
           K DL      E  H   + +  GL 
Sbjct: 298 KWDLVKGIETEEYHEYINKSLPGLS 322



 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 18/159 (11%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           VI+G  N GKS+LFN  +++ ++IV    G TRD ++ ++  +  + ++ DT G+  TD 
Sbjct: 7   VIVGRPNVGKSALFNCFSRRRISIVEPTSGVTRDRVSTEIRHKDCVFELVDTGGMGITDS 66

Query: 283 IVEKEGIK-RTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-- 331
               E I+ +  + +  AD++L + ++            E       + I I  K D   
Sbjct: 67  DGLTEDIEMQIEVALAAADVVLFVVDVREGVTPLDRIVAERLRHVKKEVILIANKVDTPK 126

Query: 332 -------YSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  ++       H +S+  G G  +L++KI S+  
Sbjct: 127 FEHSMGEFNELGFGEPHPVSAIEGYGRSDLLDKIISLFP 165


>gi|329766866|ref|ZP_08258394.1| GTP-binding protein engA [Gemella haemolysans M341]
 gi|328837591|gb|EGF87216.1| GTP-binding protein engA [Gemella haemolysans M341]
          Length = 435

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 16/150 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  +    +  E   +  +  ++G  N GKSSL N +  ++  I +DI GTTRD 
Sbjct: 154 DLLDEVCKNFKVLEEEEED-DKIRFSLIGRPNVGKSSLINTILGEERVIASDIAGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +  D    G    + DTAGIR+   +    EK  + R+   +E +D++L++  +N+++ I
Sbjct: 213 IDTDFKHNGDEYVVIDTAGIRKRGKVYESCEKYSVLRSLKAIERSDVVLVV--LNAEEGI 270

Query: 315 ----------SFPKNIDFIFIGTKSDLYST 334
                     +       I +  K D    
Sbjct: 271 IEQDKKVAGYAHESGKGVIIVVNKWDAIEK 300



 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +    ++IV D+ G TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGIELED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFIGTKSD--- 330
              +K+   +  L ++ AD+I+ L         +     ++ +  +   +    K D   
Sbjct: 66  TPFQKQIRAQAELAIDEADVIIFLTNGRDGVTSDDEEVAKLLYKTDKPVVLAVNKIDNFD 125

Query: 331 ----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               +Y  Y+  +     IS   G G+ +L++++        ++    
Sbjct: 126 MNHMIYDFYSLGFGDPFPISGSHGLGIGDLLDEVCKNFKVLEEEEEDD 173


>gi|313901830|ref|ZP_07835252.1| ribosome-associated GTPase EngA [Thermaerobacter subterraneus DSM
           13965]
 gi|313467912|gb|EFR63404.1| ribosome-associated GTPase EngA [Thermaerobacter subterraneus DSM
           13965]
          Length = 454

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 29/184 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N GKSSL N L  ++  +V+DIPGTTRD + +       + +  DTAG+R 
Sbjct: 185 IAVAIVGRPNVGKSSLVNRLLGEERVVVSDIPGTTRDAVDVLWRRGERVFRFIDTAGLRR 244

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
                D VE     RT   +  AD+  L+ +              +   +    +    K
Sbjct: 245 KSRVKDDVEFYSTLRTQRALARADVACLVLDARDPATEQDKRIAGMILEEGKACVLAVNK 304

Query: 329 SDLYSTYTEEYDHLI------------------SSFTGEGLEELINKIKSILSNKFKKLP 370
            DL +   +  D                     S+ TG+ ++ L+  +     N  +++P
Sbjct: 305 WDLVAKGPDTADQYREALYREYDFLQFAPVVFLSALTGQRVDRLVEVLAGAAENHRRRVP 364

Query: 371 FSIP 374
             + 
Sbjct: 365 EPVL 368



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN + ++ +AI  D+PG TRD L  D D  G    + DT G+ E D
Sbjct: 5   VAIVGRPNVGKSTLFNRIIERRLAIEDDVPGVTRDRLYADTDWAGREFTLVDTGGLAEGD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           D +  +  ++    V  ADL++++ +  +           +        I    K D   
Sbjct: 65  DPLTVQVRRQVEAAVREADLLIMVVDGQAGVTPADEEVARLLRQSRKPTILAVNKVDDAR 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
               +YD            ++  G  + +L++ +   L       P  
Sbjct: 125 WDGVQYDFFRLGLGEPIPVAAGPGRNVGDLLDAVVRGLPAPPADEPGD 172


>gi|167562554|ref|ZP_02355470.1| GTP-binding protein EngA [Burkholderia oklahomensis EO147]
          Length = 445

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 31/182 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKRYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--ARQDISDQDAHIAGFVVEQGRALVVG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  E                  H IS+    G+  L+  +    +   KKL
Sbjct: 297 VNKWDGLDPHVRERAKADLARKLKFLDFAKSHFISAAEKTGIGPLMRSVDDAYAAAMKKL 356

Query: 370 PF 371
           P 
Sbjct: 357 PT 358



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGVRPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D           IS+  G+G+ ++IN+   +      +   
Sbjct: 125 KYTAVASDFYELGLGDPRAISAAHGDGVTDMINEALEVAYAGQPEESE 172


>gi|115372271|ref|ZP_01459581.1| thiophene and furan oxidation protein ThdF [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370736|gb|EAU69661.1| thiophene and furan oxidation protein ThdF [Stigmatella aurantiaca
           DW4/3-1]
          Length = 164

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 3/167 (1%)

Query: 80  SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139
             E   HG   ++  +L  + +   +R A PGEF+RRAF  G+IDL  AE++ADL+++++
Sbjct: 1   MVELQAHGSPRLLQLLLARVLEDERVRPARPGEFTRRAFLQGRIDLTRAEAVADLVAADS 60

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E   R +  G++G LS       + L  + + +E  L+F    D    + +     +  L
Sbjct: 61  EAAVRAAAAGLAGALSHRVRALEEPLRALHADLEGVLNFP---DEAEGADEGAGPRVAAL 117

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
           +++  + +S+   G ++R G ++ + G  NAGKS+LFN L  +  A+
Sbjct: 118 RSEAEALLSEAGRGRLVRRGARVALYGPVNAGKSTLFNRLVGEARAL 164


>gi|313837716|gb|EFS75430.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL037PA2]
 gi|314927402|gb|EFS91233.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL044PA1]
 gi|314972655|gb|EFT16752.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL037PA3]
 gi|328907486|gb|EGG27252.1| GTP-binding protein EngA [Propionibacterium sp. P08]
          Length = 456

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 24  VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             +     ++  L +  AD +L + + N        +  ++    +   +    K D   
Sbjct: 84  SGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSHKPIVVAANKVDDAR 143

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              E            H +S+  G G  +L++ + ++L         S
Sbjct: 144 GELEAATMWNLGLGEPHPVSAIHGRGSGDLLDALIAVLPKDRTSHESS 191



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 112/283 (39%), Gaps = 29/283 (10%)

Query: 119 ENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           E  ++ +  A+++  ++ +         ++  +  +         +K+   R  +EA   
Sbjct: 92  EQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSHKPIVVAANKVDDARGELEAATM 151

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLF 236
           ++      +  S         L + + + + + +      +G + + I+G  N GKSSL 
Sbjct: 152 WNLGLGEPHPVSAIHGRGSGDLLDALIAVLPKDRTSHESSDGPRRVAIVGKPNVGKSSLL 211

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTF 293
           N +A+++  +V+DI GTT D +   + + G + +  DTAG+R+        E     RT 
Sbjct: 212 NRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKRVKEASGHEYYASLRTQ 271

Query: 294 LEVENADLILLLKEINSK------KEISFPKNIDFIFI--GTKSDLYS------------ 333
             +E A++ +++ + +        + ++  +N     +    K DL              
Sbjct: 272 AAIERAEVCVVVVDASESISDQDLRILTMVENAGRAMVIAYNKWDLTDEERRRYLEREIE 331

Query: 334 ----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               TY+      IS+  G  +++L   I++       ++   
Sbjct: 332 RDVQTYSWAPRVNISALNGRNVDKLERAIETAAEGWETRVSTG 374


>gi|228476619|ref|ZP_04061301.1| ribosome-associated GTPase EngA [Streptococcus salivarius SK126]
 gi|228251814|gb|EEK10879.1| ribosome-associated GTPase EngA [Streptococcus salivarius SK126]
          Length = 457

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 27  VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 86

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 87  APFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVARILYKTNKPVILAVNKVDNPE 146

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  + ++    I 
Sbjct: 147 MRADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPTEVEEENPDII 196



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 93/210 (44%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  +  ++G  N GKSSL NA+  +D  I + I GTTRD 
Sbjct: 175 DVLDAIVENLPT-EVEEENPDIIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDA 233

Query: 258 LTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +  + +D EG    + DTAG+R++  +    EK  + R+   ++ +D++L++  IN+++ 
Sbjct: 234 IDTNFVDSEGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEG 291

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       +      +S+
Sbjct: 292 IREYDKRIAGFAHEAGKGIIIVVNKWDTIKKDNHTVANWEADIRDQFQFLSYAPIIFVSA 351

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK I  ++ +++  ++ +
Sbjct: 352 ETKQRLNKLPEMIKRISESQNRRISSAVLN 381


>gi|326692494|ref|ZP_08229499.1| GTP-binding protein Der [Leuconostoc argentinum KCTC 3773]
          Length = 437

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  +       +      +  I+G  N GKSS+ NA+  ++  IV+DI GTTRD 
Sbjct: 154 DLLDEVVKNFPDEAAEQEDDGAIRFSIIGRPNVGKSSIVNAILGEERVIVSDIEGTTRDA 213

Query: 258 LTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK-- 311
           +    +  EG    + DTAG+R+   +    EK  + R    +++++++L++ +  +   
Sbjct: 214 IDTRFVTPEGDEFIMVDTAGMRKRGKVYENTEKYSVMRALKAIDDSNVVLMVLDAEAGIR 273

Query: 312 ------KEISFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFT 347
                    +       I +  K D                              +S+ T
Sbjct: 274 EQDKHVAGFAHEAGRAMIIVVNKWDAIEKDDHTMKDFENLIRAEFKFLDYAPIVFVSAKT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
           G+ L+ L   IK + +N  K++  S
Sbjct: 334 GQRLDRLPQMIKDVDANHRKRISSS 358



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + +AIV D PG TRD L    +   Y  ++ DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRMAGERIAIVEDQPGVTRDRLYAPAEWLNYEFRMIDTGGIELGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEI----SFPKNIDFIFIGTKSDLYS 333
           +    E   +  L ++ AD+I+++      + S  E+     +  +   +    K D   
Sbjct: 66  EPFLAEIRAQVELALDEADVIVMVTSGREGVTSADEVVAKMLYKTDKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              + YD           +S   G GL +L++++     ++  +    
Sbjct: 126 MRQDIYDFYSLGLGEPYPVSGSHGLGLGDLLDEVVKNFPDEAAEQEDD 173


>gi|317495375|ref|ZP_07953744.1| ribosome-associated GTPase EngA [Gemella moribillum M424]
 gi|316914434|gb|EFV35911.1| ribosome-associated GTPase EngA [Gemella moribillum M424]
          Length = 435

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 15/134 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E      +  ++G  N GKSSL N +  ++  I +DI GTTRD +  D    G    + D
Sbjct: 169 EEEDEKIRFSLIGRPNVGKSSLINTILGEERVIASDIAGTTRDAIDTDFKHNGDEYVVID 228

Query: 274 TAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNI 320
           TAGIR+     +  EK  + R+   +E +D++L++  +N+++ I          +     
Sbjct: 229 TAGIRKRGKVYEACEKYSVLRSLKAIERSDVVLVV--LNAEEGIIEQDKKVAGYAHESGK 286

Query: 321 DFIFIGTKSDLYST 334
             I +  K D  + 
Sbjct: 287 GVIIVVNKWDAIAK 300



 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +    ++IV D+ G TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGIELED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFIGTKSD--- 330
              +K+   +  L ++ AD+I+ L         +     ++ +  +   +    K D   
Sbjct: 66  TPFQKQIRAQAELAIDEADVIIFLTNGRDGVTSDDEEVAKLLYKTDKPVVLAVNKIDNFD 125

Query: 331 ----LYSTYTEEY--DHLISSFTGEGLEELINKI 358
               +Y  Y+  +     IS   G G+ +L++++
Sbjct: 126 MNHMIYDFYSLGFGDPFPISGSHGLGIGDLLDEV 159


>gi|303327492|ref|ZP_07357933.1| ribosome-associated GTPase EngA [Desulfovibrio sp. 3_1_syn3]
 gi|302862432|gb|EFL85365.1| ribosome-associated GTPase EngA [Desulfovibrio sp. 3_1_syn3]
          Length = 452

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 22/184 (11%)

Query: 172 IEADLDFSEEEDVQNFSS-----------KEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
           +   +D  E ED+Q                E   +I  L  D+++ + +G +        
Sbjct: 131 VVNKVDGEEREDLQMAEFHSLGFPLLPVSAEHGYNINALCEDLAALLPEGAVEPPAPPAL 190

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  NAGKSSL NALA ++  IV+D+ GTTRD + +    +G      DTAG+R  
Sbjct: 191 RLAMLGRPNAGKSSLINALAGEERMIVSDVAGTTRDSVDVRFRRDGQDYVFVDTAGVRRR 250

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKS 329
               D VEK  +         AD+ LL  +             ++   +   F+ +  K 
Sbjct: 251 TRITDSVEKYSVNAAIKSSTKADVTLLTLDATEGVSQQDKRLMDMLDTRKTPFMVLINKC 310

Query: 330 DLYS 333
           DL  
Sbjct: 311 DLIP 314



 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGI 277
           IV++G  N GKS+LFN L + + AI  D PG TRD +   +  +      I DT GI
Sbjct: 8   IVLVGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGVVRRKDLPSFGIVDTGGI 64


>gi|260221255|emb|CBA29636.1| GTP-binding protein engA [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 445

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 82/197 (41%), Gaps = 32/197 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ + G  N GKS+L N    ++  +  D+PGTTRD +++  + EG   ++ DTAG+R+
Sbjct: 180 IKLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFEREGQKFELVDTAGLRK 239

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTK 328
                + +EK  + +T   +E+A ++LLL +      +    I+          +    K
Sbjct: 240 KGKVFEAIEKFSVVKTLQAIESASVVLLLIDAEQGVTDQDAHIAGYILESGRAVVVAVNK 299

Query: 329 SDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D    Y  E                  HLIS+   +GL  L   I         K+P  
Sbjct: 300 WDAIDEYQRELVKRSLETRLGFLKFAALHLISAKKRQGLGPLWGAIAQAHKAANCKMPTP 359

Query: 373 IPSHKRHLYHLSQTVRY 389
           + +       L + V++
Sbjct: 360 VLTR-----LLLEAVQF 371



 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 20/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD    +         + DT G   + 
Sbjct: 5   IALVGRPNVGKSTLFNRLTKTRDAIVADYAGLTRDRHYGNGKHGKQEFIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFL------------------EVENADLILLLKEINSKKEISFPKNIDF 322
              + KE  K+T                      ++ D+   L+++     +   K    
Sbjct: 65  GSGIFKEMAKQTRQAVAEADVVVFVVDARAGLSAQDHDIGNYLRKLGKPCLVVANKAEGM 124

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                 ++ +     E    +S+  G+G+  LI      L  +  +  
Sbjct: 125 KAGSQLAEFFELGLGEV-FPVSAAHGQGMRSLIEMALDALHLEEPEDD 171


>gi|329116373|ref|ZP_08245090.1| ribosome biogenesis GTPase Der [Streptococcus parauberis NCFD 2020]
 gi|326906778|gb|EGE53692.1| ribosome biogenesis GTPase Der [Streptococcus parauberis NCFD 2020]
          Length = 436

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 66  APFMEQIKHQAQIAMDEADVIVFVVSGKEGVTDADEYVSKILYRTNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  +  +    + 
Sbjct: 126 MRNDIYDFYALGLGDPYPVSSVHGIGTGDVLDAIVENLPIEVTEENDDVI 175



 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 87/197 (44%), Gaps = 34/197 (17%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLV 269
           ++ E   +  +  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G   
Sbjct: 166 EVTEENDDVIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTSFKDEDGQEF 225

Query: 270 KISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SF 316
            + DTAG+R++  +    EK  + R    ++ +D++L++  IN+++ I          + 
Sbjct: 226 TMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGIREYDKRIAGFAH 283

Query: 317 PKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTGEGLEELINKI 358
                 I +  K D                       +      +S+ TG+ L +L   I
Sbjct: 284 EAGKGMIIVVNKWDTLEKDNHTVSKWEADIRDQFQFLSYAPIIFVSAETGQRLNKLPEMI 343

Query: 359 KSILSNKFKKLPFSIPS 375
           K I  ++ +++P ++ +
Sbjct: 344 KRISDSQSRRIPSAVLN 360


>gi|312866411|ref|ZP_07726629.1| ribosome biogenesis GTPase Der [Streptococcus downei F0415]
 gi|311098105|gb|EFQ56331.1| ribosome biogenesis GTPase Der [Streptococcus downei F0415]
          Length = 436

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 112/287 (39%), Gaps = 50/287 (17%)

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK  + +A+     I   T     L++  +         +  + +    +          
Sbjct: 92  GKEGVTDADEYVAKILYRTHKPVILAVNKVDNP------EMRNDIYDFYAL--------G 137

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D    SS   +     L   + +   Q        +  K  ++G  N GKSSL NAL 
Sbjct: 138 LGDPYPVSSTHGIGTGDVLDAIVENLPKQEDDDNP--DIIKFSLIGRPNVGKSSLINALL 195

Query: 241 KKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
            +D  I + + GTTRD +  D +D EG    + DTAG+R++  +    EK  I R+   +
Sbjct: 196 GEDRVIASPVAGTTRDAIDTDFVDEEGQEYTMIDTAGMRKSGKVYENTEKYSIMRSMRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLY-------STYTEEY 339
           + +D++L++  IN+++ I          +       + +  K D         S + E+ 
Sbjct: 256 DRSDVVLMV--INAEEGIRDYDKRIAGFAHEAGKGIVIVVNKWDTIKKDNHTTSKWEEDI 313

Query: 340 -----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                         +S+ T + L +L   IK I  ++  ++P S+ +
Sbjct: 314 RDNFQFLSYAPIVFVSAQTKQRLHKLPELIKRISQSQNTRIPSSVLN 360



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  +D+I+ +      +    E    I +  +   I    K D   
Sbjct: 66  APFMEQIKHQADIAMTESDVIVFVVSGKEGVTDADEYVAKILYRTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  +       I 
Sbjct: 126 MRNDIYDFYALGLGDPYPVSSTHGIGTGDVLDAIVENLPKQEDDDNPDII 175


>gi|237654043|ref|YP_002890357.1| GTP-binding protein EngA [Thauera sp. MZ1T]
 gi|237625290|gb|ACR01980.1| small GTP-binding protein [Thauera sp. MZ1T]
          Length = 442

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 87/245 (35%), Gaps = 27/245 (11%)

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
           R+ + AD       D    S+         ++  ++   +  +       G K+ I+G  
Sbjct: 126 RAMVAADFHALGLGDPLPVSAAHGDGVKQLVELVLAPFPADDEKEHSDDEGPKVAIVGRP 185

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---E 285
           N GKS+L N L  ++  I  D+PGTTRD ++I  +  G    + DTAG+R    +    E
Sbjct: 186 NVGKSTLVNTLLGEERVIAFDMPGTTRDAISIPFERGGKRYTLIDTAGLRRRGKVFEAVE 245

Query: 286 KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTE 337
           K  + +T   V+  ++++L+ +               +       +    K D    Y  
Sbjct: 246 KFSVIKTLQAVQECNVVVLVLDAAQDISDQDAHIAGFALEAGRALVVAINKWDAVDDYRR 305

Query: 338 E----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           +                  H IS+   EG+  L+  + +  +     L     +      
Sbjct: 306 DRLKADIARKLAFLSFARFHQISALKAEGIAGLLKSVDAAYAAATANLATPRLTRALQQA 365

Query: 382 HLSQT 386
              Q 
Sbjct: 366 VARQA 370



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           IV++G  N GKS+LFN L +   A+V D PG TRD       +      + DTAG     
Sbjct: 5   IVLVGRPNVGKSTLFNRLTRTRDALVADQPGLTRDRHYGIGRVGDRDYLVVDTAGFDPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY 332
            D +  E  ++    +  AD++L L +  + +                    +  K++  
Sbjct: 65  KDGIMHEMARQAEQAIAEADVLLFLVDGRAGRTPHDENIAARLRRAGRPVHVVVNKAEGI 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                  D           +S+  G+G+++L+  + +      +K 
Sbjct: 125 DRAMVAADFHALGLGDPLPVSAAHGDGVKQLVELVLAPFPADDEKE 170


>gi|167569736|ref|ZP_02362610.1| GTP-binding protein EngA [Burkholderia oklahomensis C6786]
          Length = 445

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 31/182 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKRYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--ARQDISDQDAHIAGFVVEQGRALVVG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  E                  H IS+    G+  L+  +    +   KKL
Sbjct: 297 VNKWDGLDPHVRERAKADLARKLKFLDFAKSHFISAAEKTGIGPLMRSVDDAYAAAMKKL 356

Query: 370 PF 371
           P 
Sbjct: 357 PT 358



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D           IS+  G+G+ ++IN+   +      +   
Sbjct: 125 KYTAVASDFYELGLGDPRAISAAHGDGVTDMINEALEVAYAGQPEESE 172


>gi|172057814|ref|YP_001814274.1| GTP-binding protein EngA [Exiguobacterium sibiricum 255-15]
 gi|171990335|gb|ACB61257.1| small GTP-binding protein [Exiguobacterium sibiricum 255-15]
          Length = 436

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 77/207 (37%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +       +  E   +  K  ++G  N GKSS+ N++  ++  IV+ I GTTRD 
Sbjct: 154 DMLDRVLELAPDKEDIEYDEDTIKFALVGRPNVGKSSMTNSILGEERVIVSSIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +      +     I DTAG+R+   +    E+  + R    +E AD++ ++ +       
Sbjct: 214 IDTPFSRDEQEYVIIDTAGMRKRGKVYESTERFSVMRAQKAIERADVVCVVLDGEEGIIE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
                   +       + +  K D      +                       +S+ T 
Sbjct: 274 QDKKVAGYAHEAGRAIVIVVNKWDAVEKDDKTMKKMEEEIREEFRFLDYAPIVFVSAKTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
             L+ L+  IK    +  +++  S+ +
Sbjct: 334 RRLQTLLPVIKQAAKSHAQRIQTSVLN 360



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 21/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +    V+IV D PG TRD +    +       + DT GI   D
Sbjct: 6   VAIVGRPNIGKSTIFNRVIGDRVSIVEDKPGVTRDRIYGTGEWLNRHFHLIDTGGIEVGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDL 331
           + + +    +  L ++ AD+I+ +  +N ++ I+          F  N   +    K D 
Sbjct: 66  EPLLQMMRHQAELAIDEADVIIFM--VNGREGITAADEEVANMLFRSNKPVVVAVNKVDN 123

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
           +      Y+           IS   G GL ++++++  +  +K
Sbjct: 124 FEMRDLMYEFYSLGFGDLYPISGTHGLGLGDMLDRVLELAPDK 166


>gi|148238904|ref|YP_001224291.1| GTP-binding protein EngA [Synechococcus sp. WH 7803]
 gi|166225928|sp|A5GJ79|DER_SYNPW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|147847443|emb|CAK22994.1| GTP-binding protein engA [Synechococcus sp. WH 7803]
          Length = 455

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 11/149 (7%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L + + +++             ++ I+G  N GKSSL NA+  +  AIV+ I GTTRD
Sbjct: 155 AELLDQVLTYLPPKSEEGDSEEPIQLAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRD 214

Query: 257 VLTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI----- 308
            +   L  E    ++ DTAGI   R  +   E  GI R+F  +E +D+ +L+ +      
Sbjct: 215 TIDTSLVRENRPWRLVDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVT 274

Query: 309 --NSKKEISFPKNIDFI-FIGTKSDLYST 334
             + +      ++      +  K D    
Sbjct: 275 EQDQRLAGRIEEDGRACVVVVNKWDAVEK 303



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L     AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCHSREAIVHDEPGVTRDRTYQDGYWGDRDFKVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKN--IDFIFIGTKSDLY 332
           D     E  ++  L +E A + L++ +       + +    F +      +    K +  
Sbjct: 66  DSEFLPEIREQAALALEEASVALVIVDGQQGVTASDEAIAEFLRGQRCPALLAVNKCESP 125

Query: 333 ST----------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                             + IS+  G G  EL++++ + L  K ++   
Sbjct: 126 EQGLAMAAEFWSLGLGEPYPISAIHGAGTAELLDQVLTYLPPKSEEGDS 174


>gi|227499570|ref|ZP_03929677.1| GTPase [Anaerococcus tetradius ATCC 35098]
 gi|227218329|gb|EEI83583.1| GTPase [Anaerococcus tetradius ATCC 35098]
          Length = 437

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 75/171 (43%), Gaps = 12/171 (7%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +    D     S E    +  L + I S+I   +  E I +  +I I+G  NAGKSSL N
Sbjct: 135 YQFGFDDLLMISAEQSKGLGDLLDKIVSYID-FEAYEKIEDETRIAIIGKPNAGKSSLVN 193

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK---EGIKRTFL 294
            L  ++  IVTDI GTTRD +       G    + DTAG+R    + E       +RTF 
Sbjct: 194 LLLNEERMIVTDIAGTTRDAVDSYWTYNGNNYVLIDTAGLRRKSKVKESVEYYANQRTFD 253

Query: 295 EVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTE 337
            V++A++ L L + N   ++++              I    K DL    T 
Sbjct: 254 AVDSAEICLFLIDANVGVTEQDAKIAGYAHNNKKAIIIAVNKWDLVDKDTN 304



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 18/163 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKS+LFN L  K  +I  DI G TRD +   ++ +     + DT G+  ++
Sbjct: 6   VTLVGRTNVGKSTLFNRLVGKRKSITEDISGVTRDRIVDKVEWQNKEFLLVDTGGLDISN 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTKSDLY 332
             +    +K +    +   DL+L + +        ++         N   I +  K D +
Sbjct: 66  KEIMNAEVKSQVEKALLETDLVLFVVDGREGPNPHDVDIANEVRKYNKPVIIVANKIDSF 125

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSILSNKF 366
               E YD          +IS+   +GL +L++KI S +  + 
Sbjct: 126 KMPDEIYDFYQFGFDDLLMISAEQSKGLGDLLDKIVSYIDFEA 168


>gi|161723167|ref|YP_442759.2| GTP-binding protein EngA [Burkholderia thailandensis E264]
 gi|167581710|ref|ZP_02374584.1| GTP-binding protein EngA [Burkholderia thailandensis TXDOH]
 gi|167619826|ref|ZP_02388457.1| GTP-binding protein EngA [Burkholderia thailandensis Bt4]
 gi|257138969|ref|ZP_05587231.1| GTP-binding protein EngA [Burkholderia thailandensis E264]
          Length = 445

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 31/182 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKQYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--AQQDISDQDAHIAGFVVEQGRALVVG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  E                  H IS+    G+  L+  +    +   KKL
Sbjct: 297 VNKWDGLDPHVRERTKADLARKLKFLEFAKFHFISAAEKTGIGALMRSVDDAYAAAMKKL 356

Query: 370 PF 371
           P 
Sbjct: 357 PT 358



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D           IS+  G+G+ ++IN+   +      +   
Sbjct: 125 KYTAVASDFYELGLGDPRAISAAHGDGVTDMINEALEVAYAGQPEESE 172


>gi|297621840|ref|YP_003709977.1| GTP-binding protein EngA [Waddlia chondrophila WSU 86-1044]
 gi|297377141|gb|ADI38971.1| GTP-binding protein EngA [Waddlia chondrophila WSU 86-1044]
          Length = 454

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 91/234 (38%), Gaps = 23/234 (9%)

Query: 190 KEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
            E    I  L   I S +S   +  E +    K+ I+G  N GKS+L N L  ++  +V+
Sbjct: 148 AEQNFQIAELLESIVSRLSSPIEKEEELDTSIKVAIIGRPNVGKSTLTNYLLDEERCLVS 207

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLL 305
            IPGTTRD + + +  +  +    DTAGIR      E   K    RT   +E  D+ LL+
Sbjct: 208 PIPGTTRDSVDVRVSHDDEIYTFIDTAGIRRKGAEHEAVDKFAAIRTQRAIERCDICLLM 267

Query: 306 KEIN---SKKEISFPK-----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            +     + +E    K         I +  K DL   +  E+         E +  L   
Sbjct: 268 VDAQQGITAQEKRIAKMIEKEGKCCIVLLNKWDLVKGFRMEHCFREIE---EEIHFLRYC 324

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            K ILS +  +    I    R +         L+  S  E +     + E +R 
Sbjct: 325 PKIILSAETGRNVEKIFPTIREVRQ-----ESLKRVSTGELNK---FVEEAIRQ 370



 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 18/174 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N  K+ I+G  N GKSSLFN + KK +AIV +  G TRD L  + D  G   ++ DT 
Sbjct: 1   MSNKPKLAIVGRPNVGKSSLFNRICKKRMAIVDEAEGITRDRLYAEADCFGKEFEVIDTG 60

Query: 276 GIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
           GI     +   ++ +++  + +E AD ++L  + ++           +    N       
Sbjct: 61  GINPRSQVPFNEQIMRQAEIAIEEADGLILAVDAHTGITDLDHEVARVLLHTNKPVTVAV 120

Query: 327 TKSD-------LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPF 371
            K D       ++  Y   ++H   +S+     + EL+  I S LS+  +K   
Sbjct: 121 NKIDHLGQIDLVHEFYGLGFEHCVGVSAEQNFQIAELLESIVSRLSSPIEKEEE 174


>gi|264679419|ref|YP_003279326.1| small GTP-binding protein [Comamonas testosteroni CNB-2]
 gi|262209932|gb|ACY34030.1| small GTP-binding protein [Comamonas testosteroni CNB-2]
          Length = 446

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 27/191 (14%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           GE  +   ++ + G  NAGKS+L N    ++  +  D+PGTTRD +T+  +  G   ++ 
Sbjct: 174 GEEDQKPVRLAVAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAITVPFERNGQKFELI 233

Query: 273 DTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNID 321
           DTAG+R      + +EK  + +T   +E A+++LLL +      +    I+         
Sbjct: 234 DTAGLRRKGKVFEAIEKFSVVKTLQAIEGANVVLLLIDATQGVTDQDAHIAGYILESGRS 293

Query: 322 FIFIGTKSDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNK 365
            +    K D    Y  +                  H IS+   +GLE L   I       
Sbjct: 294 VVLGINKWDAVDDYQRQMLERSIETRLSFLKFAPLHFISAQKRQGLEPLWKSIIQAHRAA 353

Query: 366 FKKLPFSIPSH 376
             K+P  + + 
Sbjct: 354 TCKMPTPVLTR 364



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 80/215 (37%), Gaps = 23/215 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD          +   + DT G   + 
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDLY 332
              + KE  K+T   V  AD+++ + +  +       EI           I +  K++  
Sbjct: 65  SRGIFKEMAKQTQQAVAEADVVIFVLDARAGLSGQDHEIGNYLRRLGKPTILVANKAEGM 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
               +  +            S+  G+G+  L++    +L+    +        ++ +   
Sbjct: 125 KDGVQLSEFYELGLGEVVPVSAAHGQGVRSLVDAALGLLNLPEPEDEVFGEEDQKPVRLA 184

Query: 384 SQTVRYLEMASLNEKDCGLD-IIAENL----RLAS 413
                    ++L     G + ++A ++    R A 
Sbjct: 185 VAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAI 219


>gi|312862558|ref|ZP_07722800.1| ribosome biogenesis GTPase Der [Streptococcus vestibularis F0396]
 gi|322517433|ref|ZP_08070306.1| ribosome-associated GTPase EngA [Streptococcus vestibularis ATCC
           49124]
 gi|311101963|gb|EFQ60164.1| ribosome biogenesis GTPase Der [Streptococcus vestibularis F0396]
 gi|322123915|gb|EFX95474.1| ribosome-associated GTPase EngA [Streptococcus vestibularis ATCC
           49124]
          Length = 436

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVARILYKTNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  + ++    I 
Sbjct: 126 MRADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPTEVEEENPDII 175



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 93/210 (44%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  +  ++G  N GKSSL NA+  +D  I + I GTTRD 
Sbjct: 154 DVLDAIVENLPT-EVEEENPDIIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDA 212

Query: 258 LTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +  + +D +G    + DTAG+R++  +    EK  + R+   ++ +D++L++  IN+++ 
Sbjct: 213 IDTNFVDSDGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGIIIVVNKWDTIKKDNHTVSNWEADIRDQFQFLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK I  ++ +++  ++ +
Sbjct: 331 ETKQRLNKLPEMIKRISESQNRRISSAVLN 360


>gi|241889489|ref|ZP_04776788.1| ribosome-associated GTPase EngA [Gemella haemolysans ATCC 10379]
 gi|241863796|gb|EER68179.1| ribosome-associated GTPase EngA [Gemella haemolysans ATCC 10379]
          Length = 435

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 16/150 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  +    +  E   +  +  ++G  N GKSSL N +  ++  I +DI GTTRD 
Sbjct: 154 DLLDEVCKNFKVLEEEEED-DKIRFSLIGRPNVGKSSLINTILGEERVIASDIAGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +  D    G    + DTAGIR+   +    EK  + R+   +E +D++L++  +N+++ I
Sbjct: 213 IDTDFKHNGDEYVVIDTAGIRKRGKVYESCEKYSVLRSLKAIERSDVVLVV--LNAEEGI 270

Query: 315 ----------SFPKNIDFIFIGTKSDLYST 334
                     +       I +  K D  + 
Sbjct: 271 IEQDKKVAGYAHESGKGVIIVVNKWDAIAK 300



 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +    ++IV D+ G TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGIELED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFIGTKSD--- 330
              +K+   +  L ++ AD+I+ L         +      + +  +   +    K D   
Sbjct: 66  TPFQKQIRAQAELAIDEADVIIFLTNGRDGVTSDDEEVARLLYKTDKPVVLAVNKIDNFD 125

Query: 331 ----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               +Y  Y+  +     IS   G G+ +L++++        ++    
Sbjct: 126 MNHMIYDFYSLGFGDPFPISGSHGLGIGDLLDEVCKNFKVLEEEEEDD 173


>gi|213027904|ref|ZP_03342351.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 153

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 6   LNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIC 65

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFI 323
            DT GI  T+D VE    +++ L +E AD++L + +  +     + +  K+         
Sbjct: 66  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTF 125

Query: 324 FIGTKSD 330
            +  K+D
Sbjct: 126 LVANKTD 132


>gi|83652896|gb|ABC36959.1| GTPase family protein [Burkholderia thailandensis E264]
          Length = 460

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 31/182 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 194 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKQYTLIDTAGLR 253

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 254 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--AQQDISDQDAHIAGFVVEQGRALVVG 311

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  E                  H IS+    G+  L+  +    +   KKL
Sbjct: 312 VNKWDGLDPHVRERTKADLARKLKFLEFAKFHFISAAEKTGIGALMRSVDDAYAAAMKKL 371

Query: 370 PF 371
           P 
Sbjct: 372 PT 373



 Score = 96.5 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 18/187 (9%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + +H          +    I ++G  N GKS+LFN L +   A+V D+PG TRD    + 
Sbjct: 1   MRAHRRCVSRRRHHQMKPVIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEG 60

Query: 263 DLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK 318
            +      + DT G      D +  E  ++T   VE AD+++ + +     + ++ S   
Sbjct: 61  RVGARPYLVVDTGGFEPVAKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIAD 120

Query: 319 -----NIDFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
                      +  K++         D           IS+  G+G+ ++IN+   +   
Sbjct: 121 YLRKTGRPIFLVVNKAEGMKYTAVASDFYELGLGDPRAISAAHGDGVTDMINEALEVAYA 180

Query: 365 KFKKLPF 371
              +   
Sbjct: 181 GQPEESE 187


>gi|254179556|ref|ZP_04886155.1| GTP-binding protein EngA [Burkholderia pseudomallei 1655]
 gi|184210096|gb|EDU07139.1| GTP-binding protein EngA [Burkholderia pseudomallei 1655]
          Length = 445

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKHYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--ARQDISDQDAHIAGFVVEQGRALVVG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  E                  H IS+    G+  L+  +    +   KKL
Sbjct: 297 VNKWDGLDPHVRERTKADLARKLKFLEFAKFHFISAAEKTGIGALMRSVDDAYAAAMKKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D           IS+  G+G+ ++IN+   +      +   
Sbjct: 125 KYTAVASDFYELGLGDPRAISATHGDGVNDMINEALEVAYAGEPQESE 172


>gi|319946441|ref|ZP_08020678.1| ribosome-associated GTPase EngA [Streptococcus australis ATCC
           700641]
 gi|319747409|gb|EFV99665.1| ribosome-associated GTPase EngA [Streptococcus australis ATCC
           700641]
          Length = 436

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 90/210 (42%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPTDREPENP-DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ 
Sbjct: 213 IDTHFTDAEGQEYTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKQWEDDIRDQFQYLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPDMIKQISESQNTRIPSAVLN 360



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +   +   I DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATAEWLNHQFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             T+ YD           +SS  G G  ++++ I   L    +     + 
Sbjct: 126 MRTDIYDFYALGLGEPLPVSSVHGIGTGDVLDAIVENLPTDREPENPDVI 175


>gi|332652769|ref|ZP_08418514.1| ribosome-associated GTPase EngA [Ruminococcaceae bacterium D16]
 gi|332517915|gb|EGJ47518.1| ribosome-associated GTPase EngA [Ruminococcaceae bacterium D16]
          Length = 441

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 29/185 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKSSL N +  ++  IV+++ GTTRD +    + E       DTAG+R+
Sbjct: 177 IKVAIIGKPNVGKSSLVNRILGQERVIVSNMAGTTRDAVDSVFENEKGKFLFIDTAGMRK 236

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
               DD +EK  + R  + +E +D+ L+L +              ++       I +  K
Sbjct: 237 KSKVDDRIEKFSVLRATMAIERSDVCLILIDAQEGVTEQDTKVAGLAHEAGKACIIVVNK 296

Query: 329 SDLYSTYTEEYDHLI------------------SSFTGEGLEELINKIKSILSNKFKKLP 370
            D      +  D +                   S+ TG+ ++ L + I  + +    ++ 
Sbjct: 297 WDAIEKDGKTMDKMRKDVMRDLSYMTYAPIIFISALTGQRVDRLFDLITYVNNQSAMRIT 356

Query: 371 FSIPS 375
             + +
Sbjct: 357 TGMLN 361



 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 19/155 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS LFN L  + ++IV D PG TRD L    +       I DT GI   T
Sbjct: 5   VAIVGRPNVGKSMLFNKLCGQRLSIVEDTPGVTRDRLYAQCEWRNRTFDIVDTGGIEPGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLY 332
           DD +     ++  + +  A +I+ + ++      S +E++          +    K+D  
Sbjct: 65  DDQILSFMREQAEIAISTATVIVFVCDVKTGMTASDQEVANMLLRSGKPVVLAVNKADQV 124

Query: 333 STYTEEY----------DHLISSFTGEGLEELINK 357
                +              +S+  G G  +L++ 
Sbjct: 125 GRENPDVYEFYNLGLGDPIAVSAVHGHGTGDLLDA 159


>gi|171780272|ref|ZP_02921176.1| hypothetical protein STRINF_02060 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281620|gb|EDT47055.1| hypothetical protein STRINF_02060 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 437

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 34/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  +   +  K  ++G  N GKSSL NA+  ++  I + I GTTRD 
Sbjct: 154 DVLDAIVENLPVEEEEDENPDIIKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDA 213

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +  +  D EG    + DTAG+R++  +    EK  + R+   ++ +D++L++  IN+++ 
Sbjct: 214 IDTNFTDSEGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEG 271

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       +      +S+
Sbjct: 272 IREYDKRIAGFAHEAGKGIIIVVNKWDTIEKDNHTVAKWEEDIRDQFQFLSYAPIIFVSA 331

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK I  ++ K++P ++ +
Sbjct: 332 ATKQRLNKLPEMIKKISESQNKRIPSAVLN 361



 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +      +    E    I +  N   I +  K D   
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSKILYRTNKPVILVVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370
              + YD           +SS  G G  ++++ I   L  + ++  
Sbjct: 126 MRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPVEEEEDE 171


>gi|116491039|ref|YP_810583.1| GTPase [Oenococcus oeni PSU-1]
 gi|290890519|ref|ZP_06553594.1| hypothetical protein AWRIB429_0984 [Oenococcus oeni AWRIB429]
 gi|116091764|gb|ABJ56918.1| Predicted GTPase [Oenococcus oeni PSU-1]
 gi|290479915|gb|EFD88564.1| hypothetical protein AWRIB429_0984 [Oenococcus oeni AWRIB429]
          Length = 442

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 20/178 (11%)

Query: 194 NDILFLKNDISSHISQGKLG----EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           N +  L +DI      G  G    +   +  KI I+G  N GKSS+FN+L K++ +IV+D
Sbjct: 151 NGVADLLDDIVDAFKNGTNGGVSDQDQEDQIKIAIIGRPNVGKSSIFNSLIKRNRSIVSD 210

Query: 250 IPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLL 305
           I GTTRD +    +   G +  ISDTAGIR++  ++   EK  + R  + +E+AD+IL++
Sbjct: 211 IQGTTRDTVDSQFEDNQGNVFTISDTAGIRKSGKVIESTEKYAVLRAQMAIESADVILVV 270

Query: 306 KEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            + ++           ++  +    + +  K D      E+ ++ +  FT +  EE  
Sbjct: 271 IDASTGIQDQDKHIAGLATEEGRAVVIVVNKWDAI----EKDNYSMKQFTEQIREEFK 324



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 17/167 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y I I+G  N GKS+LFN +     AIV DI G TRD L    +  G    + DT GI  
Sbjct: 5   YTIAIVGRPNVGKSTLFNRIVGTRKAIVNDISGVTRDRLYEKAEWNGSEFSVIDTGGISA 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL 331
           ++D+  KE  ++  L ++ AD I+ + + ++          ++ +             D 
Sbjct: 65  SNDVFIKEIKEQAELAIKEADAIIFVVDGHNGITKDDQLVAKVLYRSKQPIYLAVNHLDN 124

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
              +   YD           IS+  G G+ +L++ I     N     
Sbjct: 125 IEQHDLIYDFYSLGLGDPYPISAVHGNGVADLLDDIVDAFKNGTNGG 171


>gi|110633049|ref|YP_673257.1| GTP-binding protein EngA [Mesorhizobium sp. BNC1]
 gi|123162694|sp|Q11KI3|DER_MESSB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|110284033|gb|ABG62092.1| small GTP-binding protein [Chelativorans sp. BNC1]
          Length = 470

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  N GKS+LFN L  + +A+V D PG TRD       L      + DTAG+ E
Sbjct: 3   FKVAIVGRPNVGKSTLFNRLVGRRIALVDDTPGVTRDRRVHSARLLDLRFDVIDTAGLEE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                       +T   ++ ADL+L + +  +          E+   K    + +  K+D
Sbjct: 63  AAAPTLAGRMRAQTETAIDEADLVLFMIDARAGLMPDDRAFAEVVRRKGKPVVLVANKTD 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSIL 362
           +  T     +           +S+  G+G+ EL + I    
Sbjct: 123 VRGTDAGVLEAFALGLGDPVAVSAEHGQGMVELRDAIAEFA 163



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 31/194 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I ++G  N GKS+L NAL  ++  +     G TRD +++D    G  +K+ DTAG+R 
Sbjct: 199 IRIAVVGRPNVGKSTLINALIGEERLLTGPEAGITRDSISVDWHWRGREIKLFDTAGMRR 258

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--------IGTK 328
              +    EK  +  +   +  A++++++ +     E    +  D I            K
Sbjct: 259 KARVQEKLEKLSVGESLRAIRFAEVVIIVFDATMPFEKQDLQIADLIVREGRAPVIAFNK 318

Query: 329 SDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL     E+                      IS+ TG GL++L+    S      +++P
Sbjct: 319 WDLIENRQEKLAELREKTDRLLPQARGLRSVPISAETGRGLDQLLEAAVSTHVVWNRRVP 378

Query: 371 FSIPSHKRHLYHLS 384
               +  R L   S
Sbjct: 379 TGPLN--RWLEAAS 390


>gi|323703320|ref|ZP_08114970.1| GTP-binding protein Era [Desulfotomaculum nigrificans DSM 574]
 gi|323531683|gb|EGB21572.1| GTP-binding protein Era [Desulfotomaculum nigrificans DSM 574]
          Length = 302

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 78/200 (39%), Gaps = 22/200 (11%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
               E  R+G+ + ++G  N GKS+L N L  + VAI++D P TTR  +   L      +
Sbjct: 2   FNTPEGYRSGF-VALVGRPNVGKSTLLNKLVGQKVAIMSDKPQTTRHKIHSVLSRNDAQI 60

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNID 321
              DT GI +    + +  +      ++  D++L L E             E        
Sbjct: 61  VFLDTPGIHKPRHKLGEYMVDVALGALKEVDVVLFLVEATGPPGAGDRYIAEQLKEIKTP 120

Query: 322 FIFIGTKSDLYST---------YTEEYDH----LISSFTGEGLEELINKIKSILSNKFKK 368
              +  K DL            Y +  D      +S+  GE ++ L++ I   L    + 
Sbjct: 121 VFLLINKVDLVKKEEVLERIVSYKDLLDFAEVVPVSALAGENVDRLVDTIVQYLPEGPQY 180

Query: 369 LPFSIPSHKRHLYHLSQTVR 388
            P  + + +   + +++ +R
Sbjct: 181 YPADMVTDRPERFIMAEIIR 200


>gi|53719151|ref|YP_108137.1| GTP-binding protein EngA [Burkholderia pseudomallei K96243]
 gi|124383522|ref|YP_001026075.1| GTP-binding protein EngA [Burkholderia mallei NCTC 10229]
 gi|126439512|ref|YP_001059220.1| GTP-binding protein EngA [Burkholderia pseudomallei 668]
 gi|126449445|ref|YP_001080656.1| GTP-binding protein EngA [Burkholderia mallei NCTC 10247]
 gi|126454834|ref|YP_001066487.1| GTP-binding protein EngA [Burkholderia pseudomallei 1106a]
 gi|161579520|ref|YP_103001.2| GTP-binding protein EngA [Burkholderia mallei ATCC 23344]
 gi|162210023|ref|YP_333745.2| GTP-binding protein EngA [Burkholderia pseudomallei 1710b]
 gi|167719273|ref|ZP_02402509.1| GTP-binding protein EngA [Burkholderia pseudomallei DM98]
 gi|167738270|ref|ZP_02411044.1| GTP-binding protein EngA [Burkholderia pseudomallei 14]
 gi|167815459|ref|ZP_02447139.1| GTP-binding protein EngA [Burkholderia pseudomallei 91]
 gi|167823871|ref|ZP_02455342.1| GTP-binding protein EngA [Burkholderia pseudomallei 9]
 gi|167845410|ref|ZP_02470918.1| GTP-binding protein EngA [Burkholderia pseudomallei B7210]
 gi|167902402|ref|ZP_02489607.1| GTP-binding protein EngA [Burkholderia pseudomallei NCTC 13177]
 gi|167910644|ref|ZP_02497735.1| GTP-binding protein EngA [Burkholderia pseudomallei 112]
 gi|167918673|ref|ZP_02505764.1| GTP-binding protein EngA [Burkholderia pseudomallei BCC215]
 gi|254177966|ref|ZP_04884621.1| GTPase family protein [Burkholderia mallei ATCC 10399]
 gi|254189054|ref|ZP_04895565.1| GTP-binding protein EngA [Burkholderia pseudomallei Pasteur 52237]
 gi|254259698|ref|ZP_04950752.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1710a]
 gi|254297432|ref|ZP_04964885.1| GTP-binding protein EngA [Burkholderia pseudomallei 406e]
 gi|254358306|ref|ZP_04974579.1| GTP-binding protein EngA [Burkholderia mallei 2002721280]
 gi|81824774|sp|Q63US9|DER_BURPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166224313|sp|A3MK70|DER_BURM7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166224314|sp|A2S2A6|DER_BURM9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166224315|sp|A3NVW6|DER_BURP0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166224316|sp|A3NA49|DER_BURP6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|52209565|emb|CAH35518.1| putative GTPase [Burkholderia pseudomallei K96243]
 gi|124291542|gb|ABN00811.1| ribosome-associated GTPase EngA [Burkholderia mallei NCTC 10229]
 gi|126219005|gb|ABN82511.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 668]
 gi|126228476|gb|ABN92016.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1106a]
 gi|126242315|gb|ABO05408.1| ribosome-associated GTPase EngA [Burkholderia mallei NCTC 10247]
 gi|148027433|gb|EDK85454.1| GTP-binding protein EngA [Burkholderia mallei 2002721280]
 gi|157808014|gb|EDO85184.1| GTP-binding protein EngA [Burkholderia pseudomallei 406e]
 gi|157936733|gb|EDO92403.1| GTP-binding protein EngA [Burkholderia pseudomallei Pasteur 52237]
 gi|160699005|gb|EDP88975.1| GTPase family protein [Burkholderia mallei ATCC 10399]
 gi|254218387|gb|EET07771.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1710a]
          Length = 445

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 43/234 (18%)

Query: 194 NDILFLKNDISSHISQGKLGE-------IIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                + + I+  +     GE           G KI I+G  N GKS+L N L  +D  I
Sbjct: 147 AHGDGVNDMINEALEVAYAGEPQESEEAAAARGIKIAIVGRPNVGKSTLVNTLIGEDRVI 206

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLIL 303
             D+PGTTRD + +D +  G    + DTAG+R      + +EK  + +T   + +A++++
Sbjct: 207 AFDMPGTTRDSIYVDFERNGKHYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVI 266

Query: 304 LLKEINSKKEISFPKNIDFIFI----------GTKSDLYSTYTEEYD------------- 340
           LL +  ++++IS        F+            K D    +  E               
Sbjct: 267 LLLD--ARQDISDQDAHIAGFVVEQGRALVVGVNKWDGLDPHVRERTKADLARKLKFLEF 324

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
              H IS+    G+  L+  +    +   KKLP    +       L + V + +
Sbjct: 325 AKFHFISAAEKTGIGALMRSVDDAYAAAMKKLPTPKLTR-----ALIEAVEFQQ 373



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D           IS+  G+G+ ++IN+   +      +   
Sbjct: 125 KYTAVASDFYELGLGDPRAISAAHGDGVNDMINEALEVAYAGEPQESE 172


>gi|17545938|ref|NP_519340.1| GTP-binding protein EngA [Ralstonia solanacearum GMI1000]
 gi|26006721|sp|Q8Y026|DER_RALSO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|17428233|emb|CAD14921.1| putative gtp-binding protein [Ralstonia solanacearum GMI1000]
          Length = 447

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 15/156 (9%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +  E   +G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G   
Sbjct: 171 AEAAEGHDHGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPY 230

Query: 270 KISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI- 325
            + DTAG+R+     + +EK  + +T   + +A++++LL +  ++++IS        FI 
Sbjct: 231 TLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLLLD--AQQDISDQDAHIAGFIV 288

Query: 326 ---------GTKSDLYSTYTEEYDHLISSFTGEGLE 352
                      K D    +  +          + L 
Sbjct: 289 ESGRALVIGVNKWDGLDGHARDRIKHDMERKLQFLS 324



 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            + +  E  K+T   V  AD+++ + +     + ++              +    K++  
Sbjct: 65  KEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                  D           ISS  G+G+ EL+++   +   +  +L
Sbjct: 125 KYTAVATDFYELGLGDPRAISSAHGDGVRELVDEALDLAFAERPEL 170


>gi|258591964|emb|CBE68269.1| GTP-binding protein engA [NC10 bacterium 'Dutch sediment']
          Length = 439

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 94/265 (35%), Gaps = 33/265 (12%)

Query: 106 RLANPGEFSRRAF--------ENGKIDLLEAESLADLISSETEMQRRL----SMEGMSGE 153
           RL    E+  RAF        E G    L A+ LA +  +  E    +    + EG++  
Sbjct: 41  RLYATVEWKGRAFTLGDTGGLEPGVGTGLAAQVLAQVRQAVQESVLVIFVVDAREGLTPL 100

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL-------KNDISSH 206
              +       +          +D    E + +   +    ++  +         ++   
Sbjct: 101 DEEIARLLRHDVQTRIVVAPNKVDRPTHEVLASEFFRIGFAEVCPVSAEHGLGVAELCDV 160

Query: 207 ISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           I++              ++ ++G  N GKSSL NAL  ++  IV++  GTTRD +     
Sbjct: 161 IAEALPVTESASESKAIRVTVVGRPNVGKSSLVNALLGQERVIVSEQAGTTRDAIDTPFT 220

Query: 264 LEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPK-- 318
                  + DTAG+R    +    E+  + R    +E +D+ L+L +          K  
Sbjct: 221 YNDTAYILIDTAGLRSRSKVQQPLERFSVVRALKAIERSDVALILVDAKDGITDQDAKIA 280

Query: 319 ------NIDFIFIGTKSDLYSTYTE 337
                     I +  K DL  +  +
Sbjct: 281 AYVQDVGSGAIVVANKWDLMPSGAD 305



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 60/169 (35%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L     AIV D PG TRD L   ++ +G    + DT G+    
Sbjct: 6   VTIVGRPNVGKSTLFNRLVGGRRAIVHDQPGVTRDRLYATVEWKGRAFTLGDTGGLEPGV 65

Query: 282 DIVEKEGI-KRTFLEVENADLILLLKEINS-----KKEISFPKNIDFI----FIGTKSDL 331
                  +  +    V+ + L++ + +         +EI+     D          K D 
Sbjct: 66  GTGLAAQVLAQVRQAVQESVLVIFVVDAREGLTPLDEEIARLLRHDVQTRIVVAPNKVDR 125

Query: 332 YSTYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPF 371
            +      +     F          G G+ EL + I   L         
Sbjct: 126 PTHEVLASEFFRIGFAEVCPVSAEHGLGVAELCDVIAEALPVTESASES 174


>gi|306834169|ref|ZP_07467289.1| ribosome-associated GTPase EngA [Streptococcus bovis ATCC 700338]
 gi|304423742|gb|EFM26888.1| ribosome-associated GTPase EngA [Streptococcus bovis ATCC 700338]
          Length = 436

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +      +    E    I +  N   I +  K D   
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSKILYRTNKPVILVVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             ++ YD           +SS  G G  ++++ I   L  + +     I 
Sbjct: 126 MRSDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPVEEEDENPDII 175



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 90/207 (43%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + +    + E   N    K  ++G  N GKSSL NA+  ++  I + I GTTRD +  
Sbjct: 156 LDAIVENLPVEEEDENPDIIKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
           +  D +G    + DTAG+R++  +    EK  + R+   ++ +D++L++  IN+++ I  
Sbjct: 216 NFTDSDGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYSTYTEEYDHLI------------------SSFTG 348
                   +       I +  K D                               S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGIIIVVNKWDTIEKDNHTVVKWEEDIRDQFQFLSYAPIVFVSAATK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + IK I +++ K++P ++ +
Sbjct: 334 QRLNKLPDMIKKISASQNKRIPSAVLN 360


>gi|167893952|ref|ZP_02481354.1| GTP-binding protein EngA [Burkholderia pseudomallei 7894]
          Length = 454

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 43/234 (18%)

Query: 194 NDILFLKNDISSHISQGKLGE-------IIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                + + I+  +     GE           G KI I+G  N GKS+L N L  +D  I
Sbjct: 135 AHGDGVNDMINEALEVAYAGEPQESEEAAAARGIKIAIVGRPNVGKSTLVNTLIGEDRVI 194

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLIL 303
             D+PGTTRD + +D +  G    + DTAG+R      + +EK  + +T   + +A++++
Sbjct: 195 AFDMPGTTRDSIYVDFERNGKHYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVI 254

Query: 304 LLKEINSKKEISFPKNIDFIFI----------GTKSDLYSTYTEEYD------------- 340
           LL +  ++++IS        F+            K D    +  E               
Sbjct: 255 LLLD--ARQDISDQDAHIAGFVVEQGRALVVGVNKWDGLDPHVRERTKADLARKLKFLEF 312

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
              H IS+    G+  L+  +    +   KKLP    +       L + V + +
Sbjct: 313 AKFHFISAAEKTGIGALMRSVDDAYAAAMKKLPTPKLTR-----ALIEAVEFQQ 361



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 18/159 (11%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGI 289
           GKS+LFN L +   A+V D+PG TRD    +  +      + DT G      D +  E  
Sbjct: 2   GKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVAKDGILHEMA 61

Query: 290 KRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLYSTYTEEYDH 341
           ++T   VE AD+++ + +     + ++ S              +  K++         D 
Sbjct: 62  RQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGMKYTAVASDF 121

Query: 342 L---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                     IS+  G+G+ ++IN+   +      +   
Sbjct: 122 YELGLGDPRAISAAHGDGVNDMINEALEVAYAGEPQESE 160


>gi|299067270|emb|CBJ38467.1| GTPase involved in ribosome synthesis and maintenance [Ralstonia
           solanacearum CMR15]
          Length = 447

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 15/156 (9%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +  E   +G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G   
Sbjct: 171 AEAAEGHDHGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPY 230

Query: 270 KISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI- 325
            + DTAG+R+     + +EK  + +T   + +A++++LL +  ++++IS        FI 
Sbjct: 231 TLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLLLD--AQQDISDQDAHIAGFIV 288

Query: 326 ---------GTKSDLYSTYTEEYDHLISSFTGEGLE 352
                      K D    +  +          + L 
Sbjct: 289 ESGRALVIGVNKWDGLDGHARDRIKHDMERKLQFLS 324



 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFIAIDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            + +  E  K+T   V  AD+++ + +     + ++              +    K++  
Sbjct: 65  KEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
                  D           ISS  G+G+ EL+++   +   +  +L
Sbjct: 125 KYTAVATDFYELGLGDPRAISSAHGDGVRELVDEALDLAFAERPEL 170


>gi|6681650|dbj|BAA88823.1| phosphoglycerate dehydrogenase [Streptococcus mutans]
          Length = 436

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 92/225 (40%), Gaps = 36/225 (16%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D    SS   +     L   + +  ++ +  E   +  K  ++G  N GKSSL NA+  +
Sbjct: 140 DPYPVSSAHGIGTGDVLDAIVDNLPAEAQ--EESSDIIKFSLIGRPNVGKSSLINAILGE 197

Query: 243 DVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVEN 298
           D  I + + GTTRD +     D EG    + DTAG+R++  +    EK  + R    ++ 
Sbjct: 198 DRVIASPVAGTTRDAIDTTFTDEEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDR 257

Query: 299 ADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLI----- 343
           +D++L++  +N+++ I          +       + +  K D                  
Sbjct: 258 SDIVLMV--LNAEEGIREYDKRIAGFAHEAGKGIVVVVNKWDAIKKDNRTVAQWETDIRD 315

Query: 344 -------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                        S+ T + L +L + IK +  ++  ++P S+ +
Sbjct: 316 NFQYIPYAPIVFVSAVTKQRLHKLPDVIKQVSQSQNTRIPSSVLN 360



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   VAIVGRPNVGKSALFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +               +I +  +   I    K D   
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFVVSAKEGITDADEYVAKILYRTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +  YD           +SS  G G  ++++ I   L  + ++    I 
Sbjct: 126 MRSAIYDFYALGLGDPYPVSSAHGIGTGDVLDAIVDNLPAEAQEESSDII 175


>gi|73541770|ref|YP_296290.1| GTP-binding protein EngA [Ralstonia eutropha JMP134]
 gi|123732900|sp|Q46ZI7|DER_RALEJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|72119183|gb|AAZ61446.1| Small GTP-binding protein domain:GTP-binding [Ralstonia eutropha
           JMP134]
          Length = 447

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 114/300 (38%), Gaps = 59/300 (19%)

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +  ++AD +  +T  +  L++    G                  +     DF E      
Sbjct: 99  QDRAIADYLR-KTGRRVMLAVNKAEG----------------MKYTSVAADFYELGMGDP 141

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRN------GYKIVILGHSNAGKSSLFNALA 240
           ++      D +    D +  ++  +  E+         G KI I+G  N GKS+L N L 
Sbjct: 142 YAISAAHGDGVRELVDEALELAVQERPELAEEDADSGKGVKIAIVGRPNVGKSTLVNTLI 201

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVE 297
            ++  I  D+PGTTRD + ++ +  G    + DTAG+R      + +EK  + +T   + 
Sbjct: 202 GEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSIA 261

Query: 298 NADLILLLKEINSKKEISFPKNIDFIFI----------GTKSDLYSTYTEEYD------- 340
           +A++++LL +  ++++IS        FI            K D    +T +         
Sbjct: 262 DANVVILLLD--AQQDISDQDAHIAGFIVESGRALVVGVNKWDGLDGHTRDRIKHDLERK 319

Query: 341 ---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                    H +S+    G+  L+  +    +    KLP    +       L + V + +
Sbjct: 320 LQFLSFANFHFVSARERTGIGALMRSVDDAYAAAMVKLPTPQLTRV-----LQEAVEFQQ 374



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN + +   A+V D+PG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRMTRSRDALVADLPGLTRDRHYGEGRIGDRPFIAIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
            + +  E  K+T   V  AD+++ + +          +  +         +    K++  
Sbjct: 65  KEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRAIADYLRKTGRRVMLAVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
              +   D           IS+  G+G+ EL+++   +   +  +L
Sbjct: 125 KYTSVAADFYELGMGDPYAISAAHGDGVRELVDEALELAVQERPEL 170


>gi|325978979|ref|YP_004288695.1| GTP-binding protein EngA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178907|emb|CBZ48951.1| GTP-binding protein EngA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 436

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +      +    E    I +  N   I +  K D   
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSKILYRTNKPVILVVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             ++ YD           +SS  G G  ++++ I   L  + +     I 
Sbjct: 126 MRSDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPVEEEDENPDII 175



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 92/207 (44%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + +    + E   N    K  ++G  N GKSSL NA+  ++  I + I GTTRD +  
Sbjct: 156 LDAIVENLPVEEEDENPDIIKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
           +  D EG    + DTAG+R++  +    EK  + R+   ++ +D++L++  IN+++ I  
Sbjct: 216 NFTDSEGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       I +  K D                       +      +S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGIIIVVNKWDTIEKDNHTVVKWEEDIRDQFQFLSYAPIIFVSAATK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + IK I +++ K++P ++ +
Sbjct: 334 QRLNKLPDMIKKISASQNKRIPSAVLN 360


>gi|74316616|ref|YP_314356.1| GTP-binding protein EngA [Thiobacillus denitrificans ATCC 25259]
 gi|123773049|sp|Q3SL66|DER_THIDA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|74056111|gb|AAZ96551.1| GTP-binding protein [Thiobacillus denitrificans ATCC 25259]
          Length = 469

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 83/208 (39%), Gaps = 30/208 (14%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
                + + ++  ++     E   + +   KI ++G  N GKS+L NAL   +  I  D 
Sbjct: 147 AHGDGIADLVAEALAPFPEEEEASDDFGVPKIALVGRPNVGKSTLVNALVGAERVIAFDQ 206

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE 307
           PGTTRD + +D +  G    + DTAG+R    +    EK  + +T   +E+A++++L+ +
Sbjct: 207 PGTTRDSIYVDFERGGKPYVLIDTAGVRRRGKVFETVEKFSVIKTLQAIEDANVVVLVLD 266

Query: 308 INSK--------KEISFPKNIDFIFIGTKSDLYSTYTEE----------------YDHLI 343
                                  +    K D  S    +                  + I
Sbjct: 267 ARENISEQDAHLAGFVLETGRALVVAINKWDGLSAEQRDDVKRDIGRKLAFLDFARFNYI 326

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPF 371
           S+   +GLE L+  I++  +  F KL  
Sbjct: 327 SALKAKGLENLLKDIEAAHAAAFIKLST 354



 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           +V++G  N GKS+LFN L     A+V D+PG TRD       + G    + DT G+    
Sbjct: 5   LVLVGRPNVGKSTLFNRLTGTRDALVHDLPGMTRDRHYGRGRIGGKPYLVVDTGGLEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D +  E  ++T   ++ AD I+ + +  +
Sbjct: 65  KDGILAEMARQTLQAIDEADAIIFMVDARA 94


>gi|315223115|ref|ZP_07864983.1| ribosome-associated GTPase EngA [Streptococcus anginosus F0211]
 gi|315187804|gb|EFU21551.1| ribosome-associated GTPase EngA [Streptococcus anginosus F0211]
          Length = 436

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 88/207 (42%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + +      E + N    K  ++G  N GKSSL NA+  +D  I + + GTTRD +  
Sbjct: 156 LDAIVENLPNEEAVENPDMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
              D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ I  
Sbjct: 216 VFTDNEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
                   +       I +  K D      +                       +S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGIIIVVNKWDTLEKDNKTMQNWEADIRDQFQYLSYAPIVFVSALTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + IK I  ++  ++P ++ +
Sbjct: 334 QRLHQLPDMIKRISQSQNTRIPSAVLN 360



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+ FN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTFFNRIAGERISIVEDVEGVTRDRIYATAEWLNRKFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      I    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMDEADIIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +E +D           +SS  G G  ++++ I   L N+       + 
Sbjct: 126 MRSEIFDFYALGLGDPYPVSSVHGIGTGDILDAIVENLPNEEAVENPDMI 175


>gi|121598397|ref|YP_993149.1| GTP-binding protein EngA [Burkholderia mallei SAVP1]
 gi|217421388|ref|ZP_03452892.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 576]
 gi|237812544|ref|YP_002896995.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei MSHR346]
 gi|238563546|ref|ZP_00438709.2| ribosome-associated GTPase EngA [Burkholderia mallei GB8 horse 4]
 gi|242314802|ref|ZP_04813818.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1106b]
 gi|251767656|ref|ZP_02268028.2| ribosome-associated GTPase EngA [Burkholderia mallei PRL-20]
 gi|254197870|ref|ZP_04904292.1| GTP-binding protein EngA [Burkholderia pseudomallei S13]
 gi|254199946|ref|ZP_04906312.1| GTP-binding protein EngA [Burkholderia mallei FMH]
 gi|254206279|ref|ZP_04912631.1| GTP-binding protein EngA [Burkholderia mallei JHU]
 gi|52426961|gb|AAU47554.1| GTPase family protein [Burkholderia mallei ATCC 23344]
 gi|76581515|gb|ABA50990.1| GTPase family protein [Burkholderia pseudomallei 1710b]
 gi|121227207|gb|ABM49725.1| GTPase family protein [Burkholderia mallei SAVP1]
 gi|147749542|gb|EDK56616.1| GTP-binding protein EngA [Burkholderia mallei FMH]
 gi|147753722|gb|EDK60787.1| GTP-binding protein EngA [Burkholderia mallei JHU]
 gi|169654611|gb|EDS87304.1| GTP-binding protein EngA [Burkholderia pseudomallei S13]
 gi|217395130|gb|EEC35148.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 576]
 gi|237503777|gb|ACQ96095.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei MSHR346]
 gi|238520490|gb|EEP83949.1| ribosome-associated GTPase EngA [Burkholderia mallei GB8 horse 4]
 gi|242138041|gb|EES24443.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1106b]
 gi|243062055|gb|EES44241.1| ribosome-associated GTPase EngA [Burkholderia mallei PRL-20]
          Length = 460

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 43/234 (18%)

Query: 194 NDILFLKNDISSHISQGKLGE-------IIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                + + I+  +     GE           G KI I+G  N GKS+L N L  +D  I
Sbjct: 162 AHGDGVNDMINEALEVAYAGEPQESEEAAAARGIKIAIVGRPNVGKSTLVNTLIGEDRVI 221

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLIL 303
             D+PGTTRD + +D +  G    + DTAG+R      + +EK  + +T   + +A++++
Sbjct: 222 AFDMPGTTRDSIYVDFERNGKHYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVI 281

Query: 304 LLKEINSKKEISFPKNIDFIFI----------GTKSDLYSTYTEEYD------------- 340
           LL +  ++++IS        F+            K D    +  E               
Sbjct: 282 LLLD--ARQDISDQDAHIAGFVVEQGRALVVGVNKWDGLDPHVRERTKADLARKLKFLEF 339

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
              H IS+    G+  L+  +    +   KKLP    +       L + V + +
Sbjct: 340 AKFHFISAAEKTGIGALMRSVDDAYAAAMKKLPTPKLTR-----ALIEAVEFQQ 388



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 70/187 (37%), Gaps = 18/187 (9%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + +H          +    I ++G  N GKS+LFN L +   A+V D+PG TRD    + 
Sbjct: 1   MRAHRRCVSRRRHHQMKPVIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEG 60

Query: 263 DLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKE 313
            +      + DT G      D +  E  ++T   VE AD+++ + +          S  +
Sbjct: 61  RVGARPYLVVDTGGFEPVAKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIAD 120

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
                      +  K++         D           IS+  G+G+ ++IN+   +   
Sbjct: 121 YLRKTGRPIFLVVNKAEGMKYTAVASDFYELGLGDPRAISAAHGDGVNDMINEALEVAYA 180

Query: 365 KFKKLPF 371
              +   
Sbjct: 181 GEPQESE 187


>gi|282853835|ref|ZP_06263172.1| ribosome-associated GTPase EngA [Propionibacterium acnes J139]
 gi|282583288|gb|EFB88668.1| ribosome-associated GTPase EngA [Propionibacterium acnes J139]
 gi|314981499|gb|EFT25593.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA3]
 gi|315092162|gb|EFT64138.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA4]
          Length = 456

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 24  VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             +     ++  L +  AD +L + + N        +  ++        +    K D   
Sbjct: 84  SGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNAR 143

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +E            H +S+  G G  +L++ + ++L  +      S
Sbjct: 144 GESEAATMWNLGLGEPHPVSAMHGRGSGDLLDALIAVLPKEQASYESS 191



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 111/283 (39%), Gaps = 29/283 (10%)

Query: 119 ENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           E  ++ +  A+++  ++ +         ++  +  +         +K+ + R   EA   
Sbjct: 92  EQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNARGESEAATM 151

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLF 236
           ++      +  S         L + + + + + +      +G + + I+G  N GKSSL 
Sbjct: 152 WNLGLGEPHPVSAMHGRGSGDLLDALIAVLPKEQASYESSDGPRRVAIVGKPNVGKSSLL 211

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTF 293
           N +A+++  +V+DI GTT D +   + + G + +  DTAG+R+        E     RT 
Sbjct: 212 NRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKRVKEASGHEYYASLRTQ 271

Query: 294 LEVENADLILLLKEINSK------KEISFPKNIDFIFI--GTKSDLYS------------ 333
             +E A++ +++ + +        + ++  +N     +    K DL              
Sbjct: 272 AAIERAEVCVVVIDASESISDQDLRILTMVENAGRAMVIAYNKWDLTDEERRRYLEREIE 331

Query: 334 ----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                Y+      IS+  G  +++L   I++       ++   
Sbjct: 332 RDVQAYSWAPRVNISALNGRNVDKLEKAIETAAEGWETRISTG 374


>gi|331265908|ref|YP_004325538.1| phosphoglycerate dehydrogenase, GTP-binding protein [Streptococcus
           oralis Uo5]
 gi|326682580|emb|CBZ00197.1| phosphoglycerate dehydrogenase, GTP-binding protein [Streptococcus
           oralis Uo5]
          Length = 436

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIR 278
            K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R
Sbjct: 175 IKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           ++  +    EK  + R    ++ +D++L++  +N+++ I          +       I +
Sbjct: 235 KSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIREYDKRIAGFAHEAGKGMIIV 292

Query: 326 GTKSDLYST------------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K D                              +S+ T + L +L   IK I  ++  
Sbjct: 293 VNKWDTLEKDNHTMKKWEEDIREQFQYLPYAPIVFVSALTKQRLHKLPEMIKQISESQNT 352

Query: 368 KLPFSIPS 375
           ++P ++ +
Sbjct: 353 RIPSAVLN 360



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      I    E    K    +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + +D           ISS  G G  ++++ I   L ++ ++    + 
Sbjct: 126 MRNDIFDFYALGLGEPLPISSVHGIGTGDVLDAIVENLPHEVEEENPDVI 175


>gi|300871553|ref|YP_003786426.1| GTP-binding protein EngA [Brachyspira pilosicoli 95/1000]
 gi|300689254|gb|ADK31925.1| GTP-binding protein, EngA [Brachyspira pilosicoli 95/1000]
          Length = 489

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 13/147 (8%)

Query: 208 SQGKLGEII--RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            Q +L E I  +    I I+G  NAGKS+L N L  KD +IV++I GTTRD +    + +
Sbjct: 212 KQYRLDEYIAKKKIINIAIVGKPNAGKSTLLNTLIGKDRSIVSNIAGTTRDSIDETFNFK 271

Query: 266 GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI-----NSKKEIS-- 315
           G  + + DTAGIR+  ++    E   + R    +E +D+ +L+ ++     +  K I+  
Sbjct: 272 GDDICLVDTAGIRKKKNVNTDVEYYSVNRAIKAIEASDVCILMLDVFEGLTDQDKTIANL 331

Query: 316 -FPKNIDFIFIGTKSDLYSTYTEEYDH 341
              +    I    K D+    T   D+
Sbjct: 332 IIERRKGIIIAANKWDIREKGTTWNDY 358



 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 18/169 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
            I ILG  N GKS+LFN  A +  +IV    G TRD+      ++     + DT G+ + 
Sbjct: 3   NIAILGRPNVGKSTLFNRFAGRRKSIVDPTAGVTRDISIAKTYIDDIAFNVFDTGGLLDM 62

Query: 280 TDDIVEKEGIKRTFL-EVENADLILLLKEI-----NSKKEISFPK--NIDFIFIGTKSDL 331
           ++D++ ++  ++      + A L+L + +      + +  I+  +  N   I +  K D 
Sbjct: 63  SEDVLNEKVREKALKTATDEAHLLLFVVDAHQTHPDDRHFINTIRKLNKPIILVINKIDS 122

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
            S      +           IS+    G+++L  KI  +       L  
Sbjct: 123 DSHNNLINEFYSLGIKDIVAISAEHNNGIDDLREKILEVFERIGIDLEA 171


>gi|293400643|ref|ZP_06644788.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305669|gb|EFE46913.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 438

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 11/125 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  N GKSSL NAL  ++  IV++I GTTRD +      EG    + DTAGIR+ 
Sbjct: 178 RFCVIGRPNVGKSSLVNALLNQERVIVSNIEGTTRDAIDTPFKREGKEYVVIDTAGIRKR 237

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +    EK  + R    +E +D++L++ +  S            +       I +  K 
Sbjct: 238 GKVYENIEKYSVLRAMSAIERSDVVLVVIDGESGIRDQDKHVAGFAHEAGKGVIIVYNKW 297

Query: 330 DLYST 334
           D    
Sbjct: 298 DAVEK 302



 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 17/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  +  +IV D PG TRD +    +      ++ DT GI+  D
Sbjct: 8   VAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTKEFRVIDTGGIQLAD 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFIGTKSDLYS 333
               +E   +  + ++ AD IL +         +      +        I    K D ++
Sbjct: 68  QPFREEINMQVEIAIDEADTILFVVNGKEGITNDDEYIARLLQRSQKKVILAVNKVDDFA 127

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                Y+            S   G G+ ++++ I +   +K +K    +
Sbjct: 128 QSDSIYEFYNLGLSDPIAVSGAHGIGIGDILDAIVNSFPDKIQKDYDGM 176


>gi|218673078|ref|ZP_03522747.1| GTP-binding protein EngA [Rhizobium etli GR56]
          Length = 393

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
            D+   +     +T   ++ ADL L + +          +  E+   +    + +  KS+
Sbjct: 63  ADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
              + +  YD           IS+  G+G+ +L + I   +
Sbjct: 123 ARGSDSGFYDAYTLGLGEPTPISAEHGQGMLDLRDAIVEAI 163



 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 86/237 (36%), Gaps = 44/237 (18%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212
            +  L    ++ +   R++ + D+  ++  D+    ++    D   + +D          
Sbjct: 151 GMLDLRDAIVEAIGKDRAYAKDDVAVTDV-DIPPDENEADGEDEEPIYDD---------- 199

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
                   ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ 
Sbjct: 200 ----TKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMF 255

Query: 273 DTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNID 321
           DTAG+R    +    EK  +      +  A+ ++++ +     E        +   +   
Sbjct: 256 DTAGMRRKARVTEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLVLREGRA 315

Query: 322 FIFIGTKSD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKS 360
            +    K D                  L           IS  TG GL++L+  I  
Sbjct: 316 AVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGIRAVPISGQTGWGLDKLMQSIID 372


>gi|148994026|ref|ZP_01823382.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|168484900|ref|ZP_02709845.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1873-00]
 gi|168488574|ref|ZP_02712773.1| GTP-binding protein EngA [Streptococcus pneumoniae SP195]
 gi|307127923|ref|YP_003879954.1| GTP-binding protein EngA [Streptococcus pneumoniae 670-6B]
 gi|147927493|gb|EDK78521.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|172041949|gb|EDT49995.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1873-00]
 gi|183572668|gb|EDT93196.1| GTP-binding protein EngA [Streptococcus pneumoniae SP195]
 gi|306484985|gb|ADM91854.1| GTP-binding protein EngA [Streptococcus pneumoniae 670-6B]
 gi|332072538|gb|EGI83021.1| GTP-binding protein engA [Streptococcus pneumoniae GA17570]
 gi|332072881|gb|EGI83362.1| GTP-binding protein engA [Streptococcus pneumoniae GA17545]
          Length = 436

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPN-EYEEENPDVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D +G    + DTAG+R++  +    EK  + R    ++ +D++L++  IN+++ 
Sbjct: 213 IDTHFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                              +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK I  ++  ++P ++ +
Sbjct: 331 LTKQRLHKLPGMIKQISESQNTRIPSAVLN 360



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      I    E    K    +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           ISS  G G  ++++ I   L N++++    + 
Sbjct: 126 MRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLPNEYEEENPDVI 175


>gi|298246134|ref|ZP_06969940.1| ribosome-associated GTPase EngA [Ktedonobacter racemifer DSM 44963]
 gi|297553615|gb|EFH87480.1| ribosome-associated GTPase EngA [Ktedonobacter racemifer DSM 44963]
          Length = 474

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 33/182 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + I+G  N GKS+ FN +  + VAIV D+PGTTRD L  D D  G    + DT G+    
Sbjct: 5   VAIVGRPNVGKSTFFNRMIGERVAIVEDMPGTTRDRLYGDADWNGREFTLIDTGGLELGT 64

Query: 278 ----------RETDDIVEKEGIKRTFLEVENADLILLLKEINS---------KKEISFPK 318
                      ++ DI++     +  L +E AD+I+ + +  S            +    
Sbjct: 65  GIPVGQVGLTGQSGDIMDHVM-SQAQLAIEEADVIVFMVDARSGITAADDEVADLLRRRA 123

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
               I    K+D      +  +           ISS  G G  +L+++I   L    ++ 
Sbjct: 124 TKPVILAANKADNAERRLDVVEFYSLGLGEPTDISSIQGTGTGDLLDRIVEALPPFSEED 183

Query: 370 PF 371
             
Sbjct: 184 EA 185



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 11/125 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           +I I+G  N GKSSL NA+   + +IV+DIPGTTRD +  +L+     +K+ DTAGI   
Sbjct: 192 RIAIVGRPNVGKSSLLNAILGVNRSIVSDIPGTTRDAIDTELEFGDQKIKLVDTAGIRRR 251

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKS 329
                 VEK  + R+   +E  D+ L+L + +                     I +  K 
Sbjct: 252 GRVGVGVEKYSVLRSTRAIERCDVALMLIDASEGLTAQDTHIAGTIHEMGKGVIVVVNKW 311

Query: 330 DLYST 334
           DL   
Sbjct: 312 DLAQE 316


>gi|45658262|ref|YP_002348.1| GTP-binding protein EngA [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|73919333|sp|Q72PQ1|DER_LEPIC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|45601504|gb|AAS70985.1| GTP-binding protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 489

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 11/130 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           +++ I+G  N+GKSSL NA+   + A+V+D+ GTTRD +   L+     + ++DTAGIR 
Sbjct: 227 FRLAIVGKPNSGKSSLLNAICGYERAVVSDVAGTTRDSIDTLLEFGDRRLLLTDTAGIRK 286

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
             +T + +E    +RT   +E++DL++ L +              +   K   F+    K
Sbjct: 287 QSKTAEALEFYSYQRTIKAIESSDLVIHLLDAKKGFGDFDKKITSLLQEKGKPFLLAVNK 346

Query: 329 SDLYSTYTEE 338
            D     T++
Sbjct: 347 WDSIEDKTDK 356



 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 27/200 (13%)

Query: 197 LFLKNDISSHIS----QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
             +K +I+        +    E  +    + I+G  N GKS+LFN+L KK +AI  D PG
Sbjct: 3   KAVKKEIAKSEEVVSIKAPRKEPGKKIPVVSIVGRQNVGKSTLFNSLLKKKLAITEDYPG 62

Query: 253 TTRDVLTIDL--DLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKE-- 307
            TRDVL+  +  + +     + DT G+  E  D + +  ++  + ++  +D+I+ L +  
Sbjct: 63  VTRDVLSARIYQEEKDLDFYLCDTPGLDIENPDSLSQTILETAYGQLRESDVIVFLLDKN 122

Query: 308 ---------INSKKEISFPKNIDFIFIGTKSD--LYSTYTEEY-------DHLISSFTGE 349
                    +N  +      N   I+   K+D  L     EE+          IS+   +
Sbjct: 123 LITTADHGLLNYLRREDKVANKPIIYCVNKADKELDEFDLEEFYRMGLSEVLPISAIGRK 182

Query: 350 GLEELINKIKSILSNKFKKL 369
            L  L+ KI+  L +K  K+
Sbjct: 183 NLGLLLEKIQFFLKDKPGKV 202


>gi|83747951|ref|ZP_00944982.1| GTP-binding protein [Ralstonia solanacearum UW551]
 gi|207723168|ref|YP_002253567.1| gtp-binding protein [Ralstonia solanacearum MolK2]
 gi|83725369|gb|EAP72516.1| GTP-binding protein [Ralstonia solanacearum UW551]
 gi|206588362|emb|CAQ35325.1| gtp-binding protein [Ralstonia solanacearum MolK2]
          Length = 447

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 119/330 (36%), Gaps = 64/330 (19%)

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLS---MEGMSGEL----------SSLYGQWID 163
           A + G  + +  E +   ++ +T      +   +  + G L            L      
Sbjct: 54  AIDTGGFEPVAKEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRR 113

Query: 164 KLTHI-----RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG-------- 210
            L  +       +     DF E                  +++ +   + Q         
Sbjct: 114 ILLAVNKAEGMKYTAVATDFYELGLGDP--RAISSAHGDGVRDLVDEALDQAFSERPELA 171

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  +   +G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    
Sbjct: 172 EAAQAHDHGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYT 231

Query: 271 ISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI-- 325
           + DTAG+R+     + +EK  + +T   + +A++++LL +  ++++IS        FI  
Sbjct: 232 LIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLLLD--AQQDISDQDAHIAGFIVE 289

Query: 326 --------GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSI 361
                     K D    +  +                  H IS+    G+  L+  +   
Sbjct: 290 SGRALVIGVNKWDGLDGHARDRIKHDLERKLQFLAFANVHYISAKQRTGIGALMKSVDDA 349

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            +    KLP    +       L + V + +
Sbjct: 350 YAAAMVKLPTPKLTRV-----LQEAVEFQQ 374



 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 18/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            + +  E  K+T   V  AD+++ + +     + ++              +    K++  
Sbjct: 65  KEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINK 357
                  D           ISS  G+G+ +L+++
Sbjct: 125 KYTAVATDFYELGLGDPRAISSAHGDGVRDLVDE 158


>gi|319763709|ref|YP_004127646.1| ribosome-associated gtpase enga [Alicycliphilus denitrificans BC]
 gi|330824028|ref|YP_004387331.1| ribosome-associated GTPase EngA [Alicycliphilus denitrificans K601]
 gi|317118270|gb|ADV00759.1| ribosome-associated GTPase EngA [Alicycliphilus denitrificans BC]
 gi|329309400|gb|AEB83815.1| ribosome-associated GTPase EngA [Alicycliphilus denitrificans K601]
          Length = 447

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 88/212 (41%), Gaps = 34/212 (16%)

Query: 207 ISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           + +   G+++      ++ + G  N GKS+L N    ++  +  D+PGTTRD +++  + 
Sbjct: 165 LPEAGEGDVVAEANVIRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFER 224

Query: 265 EGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS- 315
            G   ++ DTAG+R      + +EK  + +T   +E+A+++LLL +      +    I+ 
Sbjct: 225 NGQKFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAG 284

Query: 316 --FPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGEGLEELINK 357
                    +    K D    Y  +                  H IS+   +G+  L   
Sbjct: 285 YILESGRAVVIAVNKWDAVDDYGRQQLERSIETRLSFLKFAPLHFISAMKRQGIGPLWAS 344

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           I     +  +K+P  + +       L + V++
Sbjct: 345 IVQAYKSANRKMPTPVLTR-----LLQEAVQF 371



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 19/174 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD    +     +   + DT G   + 
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGRQGKHEFIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD-- 330
              + +E  K+T   V  AD+++ + ++    S ++    K         +  G K++  
Sbjct: 65  SSGIYREMAKQTQQAVAEADVVIFVVDVRGGLSAQDHDIAKYLRRLGKPCVLAGNKAEGM 124

Query: 331 -----LYSTYTEEYD--HLISSFTGEGLEELIN-KIKSILSNKFKKLPFSIPSH 376
                L   Y       H +S+  G+G+  L+   +KS+   +  +      ++
Sbjct: 125 QDSAHLAEFYELGLGEVHPVSAAHGQGVRSLVELALKSLALPEAGEGDVVAEAN 178


>gi|320547399|ref|ZP_08041687.1| ribosome-associated GTPase EngA [Streptococcus equinus ATCC 9812]
 gi|320447944|gb|EFW88699.1| ribosome-associated GTPase EngA [Streptococcus equinus ATCC 9812]
          Length = 436

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +      +    E    I +  N   I +  K D   
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSKILYRTNKPVILVVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             ++ YD           +SS  G G  ++++ I   L  + +     I 
Sbjct: 126 MRSDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPVEEEDENPDII 175



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 90/207 (43%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + +    + E   N    K  ++G  N GKSSL NA+  ++  I + I GTTRD +  
Sbjct: 156 LDAIVENLPVEEEDENPDIIKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
           +  D EG    + DTAG+R++  +    EK  + R+   ++ +D++L++  IN+++ I  
Sbjct: 216 NFTDSEGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       I +  K D                       +      +S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGIIIVVNKWDTIEKNNYTVAKWEEDIRDQFQFLSYAPIIFVSAATK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L   IK I  ++ K++P ++ +
Sbjct: 334 QRLNKLPEMIKKISESQNKRIPSAVLN 360


>gi|309775502|ref|ZP_07670502.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916596|gb|EFP62336.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 263

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 11/125 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K  ++G  N GKSSL NA+  ++  IV++I GTTRD +      EG    + DTAGIR+ 
Sbjct: 3   KFCVIGRPNVGKSSLVNAVLNQERVIVSNIEGTTRDAIDTPFKREGKEYVVIDTAGIRKR 62

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +    EK  + R    +E +D++L++ +               +       I +  K 
Sbjct: 63  GKVYESIEKYSVLRAMSAIERSDVVLVVIDGEKGIREQDKHVAGYAHEAGKGVIIVYNKW 122

Query: 330 DLYST 334
           D    
Sbjct: 123 DTVEK 127


>gi|224826453|ref|ZP_03699555.1| small GTP-binding protein [Lutiella nitroferrum 2002]
 gi|224601554|gb|EEG07735.1| small GTP-binding protein [Lutiella nitroferrum 2002]
          Length = 463

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 102/269 (37%), Gaps = 39/269 (14%)

Query: 127 EAESLADLISSET---EMQRRLS--MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           EA+++  L+   T      + ++  +      +  +  +         S   A  +F E 
Sbjct: 82  EADAIVFLVDGRTGITPQDKIIANRLRQNDRPVFLVVNK-----AEGISQSIAGAEFHEL 136

Query: 182 EDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              +  +      D +  L   +          + +R+  K  ++G  N GKS+L NA+ 
Sbjct: 137 ALGEPLAISAAHGDGVRELMEMVLEPFPAATDEKEVRH-PKFAVIGRPNVGKSTLVNAIL 195

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVE 297
            ++  I  D  GTTRD + ID + + +   I DTAG+R   + ++ +EK  + +T   +E
Sbjct: 196 GEERVIAFDQAGTTRDSIYIDFERDDHTYTIIDTAGVRRRGKVNETIEKFSVIKTMKAIE 255

Query: 298 NADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD--------- 340
           +A++ +L+ +          +    +       +    K D   T  +E           
Sbjct: 256 DANVAVLVLDAQLDISEQDATIAGFALEAGRALVVAVNKWDNIDTEQKELVKHEIARKLG 315

Query: 341 -------HLISSFTGEGLEELINKIKSIL 362
                  H IS+  G G+ +L   I    
Sbjct: 316 FLDFAKFHFISAIEGRGIADLFKSIDEAY 344



 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       +      + DT G     
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRHYGHGRVGDKPYLVVDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE----INSKKEI----SFPKNIDFIFIGTKSDLY 332
           D+ +  E  ++T   V+ AD I+ L +    I  + +I        +     +  K++  
Sbjct: 65  DEGILFEMARQTLQAVDEADAIVFLVDGRTGITPQDKIIANRLRQNDRPVFLVVNKAEGI 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           S      +           IS+  G+G+ EL+  +         +   
Sbjct: 125 SQSIAGAEFHELALGEPLAISAAHGDGVRELMEMVLEPFPAATDEKEV 172


>gi|322375706|ref|ZP_08050218.1| ribosome-associated GTPase EngA [Streptococcus sp. C300]
 gi|321279414|gb|EFX56455.1| ribosome-associated GTPase EngA [Streptococcus sp. C300]
          Length = 436

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIR 278
            K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R
Sbjct: 175 IKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           ++  +    EK  + R    ++ +D++L++  +N+++ I          +       I +
Sbjct: 235 KSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIREYDKRIAGFAHEAGKGMIIV 292

Query: 326 GTKSDLYST------------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K D                              +S+ T + L +L   IK I  ++  
Sbjct: 293 VNKWDTLDKDNHTMKNWEEDIREQFQYLPYAPIVFVSALTKQRLHKLPEMIKQISESQNT 352

Query: 368 KLPFSIPS 375
           ++P ++ +
Sbjct: 353 RIPSAVLN 360



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      I    E    K    +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + +D           ISS  G G  ++++ I   L ++ ++    + 
Sbjct: 126 MRNDIFDFYALGLGEPLPISSVHGIGTGDVLDAIVENLPHEVEEENPDVI 175


>gi|332284650|ref|YP_004416561.1| GTP-binding protein [Pusillimonas sp. T7-7]
 gi|330428603|gb|AEC19937.1| GTP-binding protein [Pusillimonas sp. T7-7]
          Length = 478

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 82/209 (39%), Gaps = 27/209 (12%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D  +              + +    D++   +  +  E + +  K+ I+G  N GKS+L 
Sbjct: 170 DLPDAGTDDEPDFMPDDAEPVLADGDLAEQDTNQEPEEPVSHRIKLAIVGRPNVGKSTLI 229

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTF 293
           N L  +D  I  D+PGTTRD + I+ +  G    + DTAG+R      + +EK  + +T 
Sbjct: 230 NTLLGEDRVIAFDMPGTTRDAIEIEFERNGVSYTLIDTAGLRRRGKVFEAIEKFSVIKTL 289

Query: 294 LEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD----- 340
             +E  ++++L+ +  ++                   +    K D   +   E       
Sbjct: 290 QAIEACNVVVLMLDAQTEISDQDAHIAGFVLETGRALVVAINKWDGLDSEQRERIQRDFD 349

Query: 341 -----------HLISSFTGEGLEELINKI 358
                      H +S+  G+G+  LI  +
Sbjct: 350 RKLHFLSFAKMHTVSALKGQGVNVLIKSV 378



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G +N GKS+LFN + +   A+V D  G TRD    +  +  +     DT G     
Sbjct: 10  VALVGRANVGKSTLFNRITRSRAALVADFSGLTRDRHYGEGRVGEHPFIAVDTGGFEPVA 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D +  E  ++T   +  +D+++ L +  +           +             K++  
Sbjct: 70  KDGILLEMARQTQQAIAESDVVIFLVDARAGVNAHDHEIARLLRKSGQRVFLAVNKAEGM 129

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSN 364
            Y + T E+        H IS+  G+G+ ELI +  S + +
Sbjct: 130 RYGSATAEFHELGLGEPHAISASHGDGVVELIERALSYMDD 170


>gi|329850909|ref|ZP_08265754.1| ribosome-associated GTPase EngA [Asticcacaulis biprosthecum C19]
 gi|328841224|gb|EGF90795.1| ribosome-associated GTPase EngA [Asticcacaulis biprosthecum C19]
          Length = 556

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 18/156 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+LFN LA K +AIV D PG TRD      +L    + + DTAG  +
Sbjct: 3   LKIAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYATGNLGDIPLLLIDTAGFED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD +E     +T L ++  D+   + +                  ++   I I  K++
Sbjct: 63  LTDDSLESRMRVQTELALDECDVAFFVVDAREGVTPLDRIFAATLRRRDKPVIMIANKAE 122

Query: 331 --LYSTYTEEY-------DHLISSFTGEGLEELINK 357
               +   EE           +S+  GEG+ EL   
Sbjct: 123 GHQAAATAEEARVLGFGEPLHLSAEHGEGISELYEA 158



 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 11/126 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I I+G  NAGKS+L N L  ++  +     G TRD +++D   EG  +++ DTAG+R 
Sbjct: 185 IRIAIIGRPNAGKSTLINKLLGEERLLTGPEAGITRDSISVDWLYEGRTIRLVDTAGLRR 244

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------FIFIGTK 328
              +    EK     T   +  A++++L  +  +  E+   +  D         I+  +K
Sbjct: 245 KARVQEKLEKLSTADTIRAITFAEIVVLCMDEANAFEVQDLQIADLVEREGRGLIYAISK 304

Query: 329 SDLYST 334
            DL + 
Sbjct: 305 WDLVAE 310


>gi|288906012|ref|YP_003431234.1| GTP-binding protein [Streptococcus gallolyticus UCN34]
 gi|288732738|emb|CBI14312.1| putative GTP-binding protein [Streptococcus gallolyticus UCN34]
          Length = 436

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +      +    E    I +  N   I +  K D   
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSKILYRTNKPVILVVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             ++ YD           +SS  G G  ++++ I   L  + +     I 
Sbjct: 126 MRSDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPVEEEDENPDII 175



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + +    + E   N    K  ++G  N GKSSL NA+  ++  I + I GTTRD +  
Sbjct: 156 LDAIVENLPVEEEDENPDIIKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
           +  D EG    + DTAG+R++  +    EK  + R+   ++ +D++L++  IN+++ I  
Sbjct: 216 NFTDSEGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       I +  K D                       +      +S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGIIIVVNKWDTIEKDNHTVAKWEEDIRDQFQFLSYAPIIFVSAATK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + IK I  ++ K++P ++ +
Sbjct: 334 QRLNKLPDMIKKISVSQNKRIPSAVLN 360


>gi|25011707|ref|NP_736102.1| GTP-binding protein EngA [Streptococcus agalactiae NEM316]
 gi|41017045|sp|Q8E3T9|DER_STRA3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|24413247|emb|CAD47326.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 436

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 116/287 (40%), Gaps = 50/287 (17%)

Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           GK  + +A+    LI  +T     L++  +         +  + +    S          
Sbjct: 92  GKEGVTDADEYVSLILYKTNKPVILAVNKVDNP------EMRNDIYDFYSL--------G 137

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D    SS   +     + + I  ++   +  E   +  +  ++G  N GKSSL NA+ 
Sbjct: 138 LGDPYPLSSVHGIGTG-DILDAIVENLPVEEENENP-DIIRFSLIGRPNVGKSSLINAIL 195

Query: 241 KKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
            +D  I + + GTTRD +  + +D +G    + DTAG+R++  +    EK  + R+   +
Sbjct: 196 GEDRVIASPVAGTTRDAIDTNFVDSQGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAI 255

Query: 297 ENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYST------------ 334
           + +D++L++  IN+++ I          +       I +  K D                
Sbjct: 256 DRSDVVLMV--INAEEGIREYDKRIAGFAHEAGKGIIIVVNKWDTIEKDSHTVSQWEADI 313

Query: 335 ------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                  +      +S+ T + L +L + IK I  ++ K++P ++ +
Sbjct: 314 RDNFQFLSYAPIIFVSAETKQRLHKLPDMIKRISESQNKRIPSAVLN 360



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSLILYKTNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD            SS  G G  ++++ I   L  + +     I 
Sbjct: 126 MRNDIYDFYSLGLGDPYPLSSVHGIGTGDILDAIVENLPVEEENENPDII 175


>gi|311105363|ref|YP_003978216.1| GTP-binding protein EngA [Achromobacter xylosoxidans A8]
 gi|310760052|gb|ADP15501.1| GTP-binding protein EngA [Achromobacter xylosoxidans A8]
          Length = 450

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 27/166 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N L  ++  I  D+PGTTRD + ID + +G    + DTAG+R+
Sbjct: 185 IKLAIVGRPNVGKSTLINTLMGEERVIAFDMPGTTRDAIEIDFERDGRRYTLIDTAGLRK 244

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              +    EK  + +T   +E ++++LL+ +  ++                   +    K
Sbjct: 245 RGKVFEAVEKFSVIKTLQAIEASNVVLLMLDAQTEISEQDAHIAGFVLETGRAVVVAINK 304

Query: 329 SDLYSTYTEEYD----------------HLISSFTGEGLEELINKI 358
            D      +E                  H IS+  G+G++ L+  I
Sbjct: 305 WDGLDGEAKERIEREFQRKLRFLSFARMHTISALRGQGVKPLLKSI 350



 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 67/182 (36%), Gaps = 19/182 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+LFN L +   A+V D  G TRD    +  +      + DT G     
Sbjct: 7   VALVGRPNVGKSTLFNRLTRSRAALVADYSGLTRDRHYGEGRVGEIPFIVIDTGGFEPVA 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---------KKEISFPKNIDFIFIGTKSD- 330
            D +  E  ++T   +  AD+++ L +  +          + +        +    K++ 
Sbjct: 67  KDGILLEMARQTRQAIAEADVVVFLVDARAGINAHDHEIAQLLRKSGQQRVLLAVNKAEG 126

Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                    +        + IS+  G+G+ +LI      L+    +          H   
Sbjct: 127 MGAGSAISEFHELGLGQPYPISAAHGDGIVDLIELALQDLAEPPAEEESPEEGEHDHRIK 186

Query: 383 LS 384
           L+
Sbjct: 187 LA 188


>gi|24214003|ref|NP_711484.1| GTP-binding protein EngA [Leptospira interrogans serovar Lai str.
           56601]
 gi|73919334|sp|Q8F6K1|DER_LEPIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|24194868|gb|AAN48502.1| GTP-binding protein EngA [Leptospira interrogans serovar Lai str.
           56601]
          Length = 489

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 11/130 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           +++ I+G  N+GKSSL NA+   + A+V+D+ GTTRD +   L+     + ++DTAGIR 
Sbjct: 227 FRLAIVGKPNSGKSSLLNAICGYERAVVSDVAGTTRDSIDTLLEFGDRRLLLTDTAGIRK 286

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
             +T + +E    +RT   +E++DL++ L +              +   K   F+    K
Sbjct: 287 QSKTAEALEFYSYQRTIKAIESSDLVIHLLDAKKGFGDFDKKITSLLQEKGKPFLLAVNK 346

Query: 329 SDLYSTYTEE 338
            D     T++
Sbjct: 347 WDSIEDKTDK 356



 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 27/200 (13%)

Query: 197 LFLKNDISSHIS----QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
             +K +I+        +    E  +    + I+G  N GKS+LFN+L KK +AI  D PG
Sbjct: 3   KAVKKEIAKSEEVVSIKAPRKEPGKKIPVVSIVGRQNVGKSTLFNSLLKKKLAITEDYPG 62

Query: 253 TTRDVLTIDL--DLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKE-- 307
            TRDVL+  +  + +     + DT G+  E  D + +  ++  + ++  +D+I+ L +  
Sbjct: 63  VTRDVLSARIYQEEKDLDFYLCDTPGLDIENPDSLSQTILETAYRQLRESDVIVFLLDKN 122

Query: 308 ---------INSKKEISFPKNIDFIFIGTKSD--LYSTYTEEY-------DHLISSFTGE 349
                    +N  +      N   I+   K+D  L     EE+          IS+   +
Sbjct: 123 LITTADHGLLNYLRREDKVANKPIIYCVNKADKELDEFDLEEFYRMGLSEVLPISAIGRK 182

Query: 350 GLEELINKIKSILSNKFKKL 369
            L  L+ KI+  L +K  K+
Sbjct: 183 NLGLLLEKIQFFLKDKPGKV 202


>gi|134277744|ref|ZP_01764459.1| GTP-binding protein EngA [Burkholderia pseudomallei 305]
 gi|226197301|ref|ZP_03792878.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei Pakistan
           9]
 gi|134251394|gb|EBA51473.1| GTP-binding protein EngA [Burkholderia pseudomallei 305]
 gi|225930680|gb|EEH26690.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei Pakistan
           9]
          Length = 433

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 43/234 (18%)

Query: 194 NDILFLKNDISSHISQGKLGE-------IIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                + + I+  +     GE           G KI I+G  N GKS+L N L  +D  I
Sbjct: 135 AHGDGVNDMINEALEVAYAGEPQESEEAAAARGIKIAIVGRPNVGKSTLVNTLIGEDRVI 194

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLIL 303
             D+PGTTRD + +D +  G    + DTAG+R      + +EK  + +T   + +A++++
Sbjct: 195 AFDMPGTTRDSIYVDFERNGKHYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVI 254

Query: 304 LLKEINSKKEISFPKNIDFIFI----------GTKSDLYSTYTEEYD------------- 340
           LL +  ++++IS        F+            K D    +  E               
Sbjct: 255 LLLD--ARQDISDQDAHIAGFVVEQGRALVVGVNKWDGLDPHVRERTKADLARKLKFLEF 312

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
              H IS+    G+  L+  +    +   KKLP    +       L + V + +
Sbjct: 313 AKFHFISAAEKTGIGALMRSVDDAYAAAMKKLPTPKLTR-----ALIEAVEFQQ 361



 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 18/159 (11%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGI 289
           GKS+LFN L +   A+V D+PG TRD    +  +      + DT G      D +  E  
Sbjct: 2   GKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVAKDGILHEMA 61

Query: 290 KRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           ++T   VE AD+++ + +          S  +           +  K++         D 
Sbjct: 62  RQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGMKYTAVASDF 121

Query: 342 L---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                     IS+  G+G+ ++IN+   +      +   
Sbjct: 122 YELGLGDPRAISAAHGDGVNDMINEALEVAYAGEPQESE 160


>gi|261749359|ref|YP_003257044.1| GTP-binding protein EngA [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497451|gb|ACX83901.1| GTP-binding protein EngA [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 439

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  +  AIV    G TRD +  + +  G    + DT G     
Sbjct: 5   VSIVGRPNVGKSTLFNRLVGRRKAIVHVRSGVTRDRIYGESEWNGVHFSLVDTGGYNPIH 64

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPK---NIDFIFIGTKSDLY 332
            ++++ E IK+  + ++ AD+IL L +I     ++  EIS          + +  K D  
Sbjct: 65  KNLLDAEIIKQILIAIKEADVILFLVDIKIGILDTDVEISQLLRKYKKYILLVVNKVDNG 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKL 369
                  D            S+  G G  EL++++  I  +  K+ 
Sbjct: 125 KYMYHNTDFFCLGFREYYYISAINGSGTGELLDRLIEIFKSLGKRE 170



 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 13/153 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGY--KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L + +          EI+      +  ++G  N GKS+L N+  +K+  IVT++ GTTR
Sbjct: 154 ELLDRLIEIFKSLGKREIMEKEVLPRFSVIGRPNVGKSTLINSFLEKNHHIVTNVSGTTR 213

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKK 312
           D L +     GY   + DT G+R+   I    E     RT   +E+ D+  L+ +     
Sbjct: 214 DSLDVFCKKLGYKCILVDTPGVRKKSKISESLEFYSTMRTVKSIESTDICFLMVDAVRGW 273

Query: 313 EISFPKNIDF--------IFIGTKSDLYSTYTE 337
           E                 I +  K DL ++   
Sbjct: 274 EAQDRNIFRLVERNQKGIIILINKWDLLNSEKN 306


>gi|289425429|ref|ZP_06427206.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK187]
 gi|289154407|gb|EFD03095.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK187]
 gi|313764267|gb|EFS35631.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL013PA1]
 gi|313791953|gb|EFS40054.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA1]
 gi|313801564|gb|EFS42804.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA2]
 gi|313812757|gb|EFS50471.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL025PA1]
 gi|313816358|gb|EFS54072.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL059PA1]
 gi|313827352|gb|EFS65066.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL063PA2]
 gi|313838918|gb|EFS76632.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL086PA1]
 gi|314915744|gb|EFS79575.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA4]
 gi|314917888|gb|EFS81719.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL050PA1]
 gi|314920270|gb|EFS84101.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL050PA3]
 gi|314931490|gb|EFS95321.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL067PA1]
 gi|314955499|gb|EFS99902.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL027PA1]
 gi|314957875|gb|EFT01978.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL002PA1]
 gi|314962609|gb|EFT06709.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL082PA1]
 gi|315077825|gb|EFT49876.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL053PA2]
 gi|315098722|gb|EFT70698.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL059PA2]
 gi|315101509|gb|EFT73485.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL046PA1]
 gi|315108797|gb|EFT80773.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL030PA2]
 gi|327450594|gb|EGE97248.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL087PA3]
 gi|327453328|gb|EGE99982.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL092PA1]
 gi|327454067|gb|EGF00722.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL083PA2]
 gi|328753149|gb|EGF66765.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL025PA2]
 gi|328754012|gb|EGF67628.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL087PA1]
          Length = 456

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 24  VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             +     ++  L +  AD +L + + N        +  ++        +    K D   
Sbjct: 84  SGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNAR 143

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +E            H +S+  G G  +L++ + ++L  +      S
Sbjct: 144 GESEAATMWNLGLGEPHPVSAMHGRGSGDLLDALIAVLPKEQASYESS 191



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 111/283 (39%), Gaps = 29/283 (10%)

Query: 119 ENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           E  ++ +  A+++  ++ +         ++  +  +         +K+ + R   EA   
Sbjct: 92  EQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNARGESEAATM 151

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLF 236
           ++      +  S         L + + + + + +      +G + + I+G  N GKSSL 
Sbjct: 152 WNLGLGEPHPVSAMHGRGSGDLLDALIAVLPKEQASYESSDGPRRVAIVGKPNVGKSSLL 211

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTF 293
           N +A+++  +V+DI GTT D +   + + G + +  DTAG+R+        E     RT 
Sbjct: 212 NRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKRVKEASGHEYYASLRTQ 271

Query: 294 LEVENADLILLLKEINSK------KEISFPKNIDFIFI--GTKSDLYS------------ 333
             +E A++ +++ + +        + ++  +N     +    K DL              
Sbjct: 272 AAIERAEVCVVVIDASESISDQDLRILTMVENAGRAMVIAYNKWDLTDEERRRYLEREIE 331

Query: 334 ----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                Y+      IS+  G  +++L   I++       ++   
Sbjct: 332 RDVQAYSWAPRVNISALNGRNVDKLEKAIETAAEGWEMRISTG 374


>gi|50842690|ref|YP_055917.1| GTP-binding protein EngA [Propionibacterium acnes KPA171202]
 gi|289428509|ref|ZP_06430193.1| ribosome-associated GTPase EngA [Propionibacterium acnes J165]
 gi|295130771|ref|YP_003581434.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK137]
 gi|50840292|gb|AAT82959.1| putative GTP binding protein [Propionibacterium acnes KPA171202]
 gi|289158203|gb|EFD06422.1| ribosome-associated GTPase EngA [Propionibacterium acnes J165]
 gi|291376501|gb|ADE00356.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK137]
 gi|313772016|gb|EFS37982.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL074PA1]
 gi|313807708|gb|EFS46195.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL087PA2]
 gi|313810216|gb|EFS47937.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL083PA1]
 gi|313818745|gb|EFS56459.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL046PA2]
 gi|313820515|gb|EFS58229.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL036PA1]
 gi|313822679|gb|EFS60393.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL036PA2]
 gi|313825388|gb|EFS63102.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL063PA1]
 gi|313830547|gb|EFS68261.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL007PA1]
 gi|313833583|gb|EFS71297.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL056PA1]
 gi|314924995|gb|EFS88826.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL036PA3]
 gi|314960338|gb|EFT04440.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL002PA2]
 gi|314973547|gb|EFT17643.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL053PA1]
 gi|314975769|gb|EFT19864.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL045PA1]
 gi|314978673|gb|EFT22767.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL072PA2]
 gi|314983751|gb|EFT27843.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA1]
 gi|314987933|gb|EFT32024.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA2]
 gi|314989743|gb|EFT33834.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA3]
 gi|315080449|gb|EFT52425.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL078PA1]
 gi|315084779|gb|EFT56755.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL027PA2]
 gi|315085464|gb|EFT57440.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL002PA3]
 gi|315088479|gb|EFT60455.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL072PA1]
 gi|315095821|gb|EFT67797.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL038PA1]
 gi|315105878|gb|EFT77854.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL030PA1]
 gi|327326374|gb|EGE68164.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL096PA2]
 gi|327330445|gb|EGE72194.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL097PA1]
 gi|327331752|gb|EGE73489.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL096PA3]
 gi|327443529|gb|EGE90183.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL013PA2]
 gi|327445732|gb|EGE92386.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL043PA2]
 gi|327448285|gb|EGE94939.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL043PA1]
 gi|328754740|gb|EGF68356.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL020PA1]
 gi|328760937|gb|EGF74502.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL099PA1]
 gi|332675613|gb|AEE72429.1| GTP-binding protein EngA [Propionibacterium acnes 266]
          Length = 456

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 24  VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             +     ++  L +  AD +L + + N        +  ++        +    K D   
Sbjct: 84  SGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNAR 143

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +E            H +S+  G G  +L++ + ++L  +      S
Sbjct: 144 GESEAATMWNLGLGEPHPVSAMHGRGSGDLLDALIAVLPKEQASYESS 191



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 111/283 (39%), Gaps = 29/283 (10%)

Query: 119 ENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           E  ++ +  A+++  ++ +         ++  +  +         +K+ + R   EA   
Sbjct: 92  EQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNARGESEAATM 151

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLF 236
           ++      +  S         L + + + + + +      +G + + I+G  N GKSSL 
Sbjct: 152 WNLGLGEPHPVSAMHGRGSGDLLDALIAVLPKEQASYESSDGPRRVAIVGKPNVGKSSLL 211

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTF 293
           N +A+++  +V+DI GTT D +   + + G + +  DTAG+R+        E     RT 
Sbjct: 212 NRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKRVKEASGHEYYASLRTQ 271

Query: 294 LEVENADLILLLKEINSK------KEISFPKNIDFIFI--GTKSDLYS------------ 333
             +E A++ +++ + +        + ++  +N     +    K DL              
Sbjct: 272 AAIERAEVCVVVIDASESISDQDLRILTMVENAGRAMVIAYNKWDLTDEERRRYLEREIE 331

Query: 334 ----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                Y+      IS+  G  +++L   I++       ++   
Sbjct: 332 RDVQAYSWAPRVNISALNGRNVDKLEKAIETAAEGWETRISTG 374


>gi|330936977|gb|EGH41077.1| GTP-binding protein Der [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 334

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 11/125 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G KI I+G  N GKS+L N +  +D  IV D PGTTRD + I  +       + DTAG
Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   I    EK  + +T   +++A++++ + +               +       +  
Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312

Query: 326 GTKSD 330
             K D
Sbjct: 313 LNKWD 317



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ L +E AD++L L +  +          E    +N     +  K D
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKID 121


>gi|327327397|gb|EGE69173.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL103PA1]
          Length = 456

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 24  VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             +     ++  L +  AD +L + + N        +  ++        +    K D   
Sbjct: 84  SGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNTR 143

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +E            H +S+  G G  +L++ + ++L  +      S
Sbjct: 144 GESEAATMWNLGLGEPHPVSAMHGRGSGDLLDALIAVLPKEQASYESS 191



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 106/286 (37%), Gaps = 35/286 (12%)

Query: 119 ENGKIDLLEAESLADLISSET-----EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           E  ++ +  A+++  ++ +       +      +      +     +  +      +   
Sbjct: 92  EQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNTRGESEAATM 151

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
            +L   E   V     +   + +  L   +    +  +  E  R   ++ I+G  N GKS
Sbjct: 152 WNLGLGEPHPVSAMHGRGSGDLLDALIAVLPKEQASYESSEGPR---RVAIVGKPNVGKS 208

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIK 290
           SL N +A+++  +V+DI GTT D +   + + G + +  DTAG+R+        E     
Sbjct: 209 SLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKRVKEASGHEYYASL 268

Query: 291 RTFLEVENADLILLLKEINSK------KEISFPKNIDFIFI--GTKSDLYS--------- 333
           RT   +E A++ +++ + +        + ++  +N     +    K DL           
Sbjct: 269 RTQAAIERAEVCVVVIDASESISDQDLRILTMVENAGRAMVIAYNKWDLTDEERRRYLER 328

Query: 334 -------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   Y+      IS+  G  +++L   I++       ++   
Sbjct: 329 EIERDVQAYSWAPRVNISALNGRNVDKLEKAIETAAEGWETRISTG 374


>gi|314923527|gb|EFS87358.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL001PA1]
 gi|314966574|gb|EFT10673.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL082PA2]
 gi|315092905|gb|EFT64881.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL060PA1]
 gi|315103573|gb|EFT75549.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL050PA2]
          Length = 456

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 24  VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             +     ++  L +  AD +L + + N        +  ++        +    K D   
Sbjct: 84  SGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNTR 143

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +E            H +S+  G G  +L++ + ++L  +      S
Sbjct: 144 GESEAATMWNLGLGEPHPVSAMHGRGSGDLLDALIAVLPKEQASYESS 191



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 111/283 (39%), Gaps = 29/283 (10%)

Query: 119 ENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           E  ++ +  A+++  ++ +         ++  +  +         +K+ + R   EA   
Sbjct: 92  EQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNTRGESEAATM 151

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLF 236
           ++      +  S         L + + + + + +      +G + + I+G  N GKSSL 
Sbjct: 152 WNLGLGEPHPVSAMHGRGSGDLLDALIAVLPKEQASYESSDGPRRVAIVGKPNVGKSSLL 211

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTF 293
           N +A+++  +V+DI GTT D +   + + G + +  DTAG+R+        E     RT 
Sbjct: 212 NRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKRVKEASGHEYYASLRTQ 271

Query: 294 LEVENADLILLLKEINSK------KEISFPKNIDFIFI--GTKSDLYS------------ 333
             +E A++ +++ + +        + ++  +N     +    K DL              
Sbjct: 272 AAIERAEVCVVVIDASESISDQDLRILTMVENAGRAMVIAYNKWDLTDEERRRYLEREIE 331

Query: 334 ----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                Y+      IS+  G  +++L   I++       ++   
Sbjct: 332 RDVQAYSWAPRVNISALNGRNVDKLEKAIETAAEGWETRISTG 374


>gi|217077884|ref|YP_002335602.1| GTP-binding protein EngA [Thermosipho africanus TCF52B]
 gi|226741195|sp|B7IE34|DER_THEAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|217037739|gb|ACJ76261.1| GTP-binding protein EngA [Thermosipho africanus TCF52B]
          Length = 439

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 93/232 (40%), Gaps = 36/232 (15%)

Query: 185 QNFSSKEVLNDILFLKNDISSHIS------QGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
             F S E   +I  L   I + +       +  L E  ++  ++  +G  NAGKS+LFN+
Sbjct: 141 PIFVSAEQGKNIDTLIERIVNVLESKGLSLEENLKEESQSIIRVSFIGRPNAGKSTLFNS 200

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK----EGIKRTFL 294
           +  K+  +VT IPGTTRD +   + + G      DTAG+R    +  K        R+  
Sbjct: 201 ILNKERVLVTPIPGTTRDSVDELVTINGRKYLFVDTAGLRRKSKVDYKSLDMYSNVRSIK 260

Query: 295 EVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTY---TEEYD--- 340
            +EN+D++++L +              I+  +    I    K DL   +    EE+    
Sbjct: 261 SIENSDVVVILIDAIEGITHQDQRIAGIAENRGKATIVAFNKIDLIKNFKYKKEEFIDQF 320

Query: 341 ------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                         +S+   +G++ LIN I     +   ++  S  +     
Sbjct: 321 NEKLYFINYSPLIFLSAINKKGIDNLINAIDEAYKSLHYRVQTSAVNSAIQR 372



 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 19/171 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           ++I+G SN GKS+LFN L     +IV D  G TRD ++  +        I DT GI E  
Sbjct: 4   VLIVGKSNVGKSTLFNKLIGYKKSIVDDKEGVTRDAVSGRVSYYSKTFNIVDTGGIFENP 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
           +D +  +    T   +  ADLIL + +  +          +I    N D I +  KS+  
Sbjct: 64  EDDIINKSKDLTLKMLNEADLILFVIDAKNGITSEDYYLADIIRKSNNDVILVSNKSESE 123

Query: 331 ------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                 L   Y   +     +S+  G+ ++ LI +I ++L +K   L  ++
Sbjct: 124 RRVQNNLPDIYKLGFGDPIFVSAEQGKNIDTLIERIVNVLESKGLSLEENL 174


>gi|251781814|ref|YP_002996116.1| GTP-binding protein EngA [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390443|dbj|BAH80902.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|323126626|gb|ADX23923.1| GTP-binding protein EngA [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 436

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 66  APFMEQIKHQAQIAMEEADVIVFVVSGKEGVTDADEYVSKILYRTNTPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  +  +    I 
Sbjct: 126 MRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPVEEVEENDDII 175



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 88/207 (42%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + +    + E+  N    +  ++G  N GKSSL NA+  +D  I + + GTTRD +  
Sbjct: 156 LDAIVENLPVEEVEENDDIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
              D +G    + DTAG+R++  I    EK  + R    ++ +D++L++  IN+++ I  
Sbjct: 216 HFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       I +  K D                              +S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGMIIVVNKWDTIDKDNHTVAQWEADIRDQFQFLAYAPIIFVSALTK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L   IK I  ++ K++P ++ +
Sbjct: 334 QRLNKLPELIKRISDSQNKRIPSAVLN 360


>gi|306832031|ref|ZP_07465186.1| ribosome-associated GTPase EngA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425957|gb|EFM29074.1| ribosome-associated GTPase EngA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 436

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +      +    E    I +  N   I +  K D   
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSKILYRTNKPVILVVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             ++ YD           +SS  G G  ++++ I   L  + +     I 
Sbjct: 126 MRSDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPVEEEDENPDII 175



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 92/207 (44%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + +    + E   N    K  ++G  N GKSSL NA+  ++  I + I GTTRD +  
Sbjct: 156 LDAIVENLPVEEEDENPDIIKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDT 215

Query: 261 DL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
           +  D EG    + DTAG+R++  +    EK  + R+   ++ +D++L++  IN+++ I  
Sbjct: 216 NFTDSEGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGIRE 273

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       I +  K D                       +      +S+ T 
Sbjct: 274 YDKRIAGFAHEAGKGIIIVVNKWDTIEKDNHTVAKWEEDIRDQFQFLSYAPIIFVSAATK 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L + IK I +++ K++P ++ +
Sbjct: 334 QRLNKLPDMIKKISASQNKRIPSAVLN 360


>gi|293365923|ref|ZP_06612626.1| ribosome-associated GTPase EngA [Streptococcus oralis ATCC 35037]
 gi|307702327|ref|ZP_07639285.1| small GTP-binding domain protein [Streptococcus oralis ATCC 35037]
 gi|315613624|ref|ZP_07888531.1| ribosome-associated GTPase EngA [Streptococcus sanguinis ATCC
           49296]
 gi|291315601|gb|EFE56051.1| ribosome-associated GTPase EngA [Streptococcus oralis ATCC 35037]
 gi|307624130|gb|EFO03109.1| small GTP-binding domain protein [Streptococcus oralis ATCC 35037]
 gi|315314315|gb|EFU62360.1| ribosome-associated GTPase EngA [Streptococcus sanguinis ATCC
           49296]
          Length = 436

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIR 278
            K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R
Sbjct: 175 IKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           ++  +    EK  + R    ++ +D++L++  +N+++ I          +       I +
Sbjct: 235 KSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIREYDKRIAGFAHEAGKGMIIV 292

Query: 326 GTKSDLYST------------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K D                              +S+ T + L +L   IK I  ++  
Sbjct: 293 VNKWDTLEKDNHTMKKWEEDIREQFQYLPYAPIVFVSALTKQRLHKLPEMIKQISESQNT 352

Query: 368 KLPFSIPS 375
           ++P ++ +
Sbjct: 353 RIPSAVLN 360



 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      I    E    K    +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + +D           ISS  G G  ++++ I   L ++ ++    + 
Sbjct: 126 MRNDIFDFYALGLGEPLPISSVHGIGTGDVLDAIVENLPHEVEEENPDVI 175


>gi|213581531|ref|ZP_03363357.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 162

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158


>gi|49473957|ref|YP_031999.1| GTP-binding protein EngA [Bartonella quintana str. Toulouse]
 gi|81696063|sp|Q6G0H5|DER_BARQU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|49239460|emb|CAF25811.1| GTP-binding protein [Bartonella quintana str. Toulouse]
          Length = 477

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I ++G  N GKS+LFN L  + +A+V D PG TRD      +L+     + DTAG+ E
Sbjct: 3   LTIAVVGRPNVGKSTLFNRLVGQKLALVCDKPGVTRDRRIHAAELQDLCFDVIDTAGLEE 62

Query: 280 TDD-IVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             D  +E      T   +  ADLIL + +  S           +        + +  KS+
Sbjct: 63  AGDHTLEGRMCSHTKAAINEADLILFMFDAKSGITPSDLNFASLVRKSGKPIVLVANKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             +    EY+           IS+  G GL +L + I   +
Sbjct: 123 SKAAVGVEYEAWSLGLGEPCPISAEHGLGLSDLRDAIMDAI 163



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 11/146 (7%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           +     +G + +  +   +I + G  N GKS+L N +  +D  +     G TRD +++D 
Sbjct: 189 VDDLEEKGSVCDESKQPLRIAVAGRPNTGKSTLINRMLGQDRLLTGPEAGLTRDSISVDW 248

Query: 263 DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE------ 313
           +  G  +K+ DTAG+R    I    EK  +  T   +  A++++++ +  +  E      
Sbjct: 249 EWRGRHIKLFDTAGLRRKSKIQEKLEKLSVADTLRAIRFAEVVVIVFDATAPFEKQDLQI 308

Query: 314 --ISFPKNIDFIFIGTKSDLYSTYTE 337
             +   +    I    K DL    ++
Sbjct: 309 ADLVIREGRVPIIAFNKWDLIENNSQ 334


>gi|207743439|ref|YP_002259831.1| gtp-binding protein enga (partial sequence c terminus) [Ralstonia
           solanacearum IPO1609]
 gi|206594836|emb|CAQ61763.1| putative gtp-binding protein enga (partial sequence c terminus)
           [Ralstonia solanacearum IPO1609]
          Length = 363

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 96/235 (40%), Gaps = 44/235 (18%)

Query: 194 NDILFLKNDISSHISQG--------KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                +++ +   + Q         +  +   +G +I I+G  N GKS+L NAL  ++  
Sbjct: 63  AHGDGVRDLVDEALDQAFSERPELAEAAQAHDHGTRIAIVGRPNVGKSTLVNALIGEERV 122

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLI 302
           I  D+PGTTRD + +D +  G    + DTAG+R+     + +EK  + +T   + +A+++
Sbjct: 123 IAFDMPGTTRDAIYVDFERNGKPYTLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVV 182

Query: 303 LLLKEINSKKEISFPKNIDFIFI----------GTKSDLYSTYTEEYD------------ 340
           +LL +  ++++IS        FI            K D    +  +              
Sbjct: 183 VLLLD--AQQDISDQDAHIAGFIVESGRALVIGVNKWDGLDGHARDRIKHDLERKLQFLA 240

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
               H IS+    G+  L+  +    +    KLP    +       L + V + +
Sbjct: 241 FANVHYISAKQRTGIGALMKSVDDAYAAAMVKLPTPKLTRV-----LQEAVEFQQ 290


>gi|313890874|ref|ZP_07824498.1| ribosome biogenesis GTPase Der [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313120772|gb|EFR43887.1| ribosome biogenesis GTPase Der [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 436

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 34/194 (17%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKIS 272
           E   N  +  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + 
Sbjct: 169 EDNENIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTSFTDSDGQEFTMI 228

Query: 273 DTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKN 319
           DTAG+R++  +    EK  + R    ++ +D++L++  IN+++ I          +    
Sbjct: 229 DTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGIREYDKRIAGFAHEAG 286

Query: 320 IDFIFIGTKSDLYST------------------YTEEYDHLISSFTGEGLEELINKIKSI 361
              I +  K D  S                    +      +S+ T + L +L   IK I
Sbjct: 287 KGMIIVVNKWDTISKDNHTVSKWEEDIRDQFQFLSYAPIIFVSALTKQRLNKLPELIKRI 346

Query: 362 LSNKFKKLPFSIPS 375
             ++ +++P ++ +
Sbjct: 347 SDSQSRRIPSAVLN 360



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      +    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAQIAMDEADVIVFVVSGKEGVTDADEYVAKMLYRTHKPVILAINKVDNPE 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD            SS  G G  ++++ I   L  +  +   +I 
Sbjct: 126 MRNDIYDFYSLGLGDPYPLSSVHGIGTGDVLDAIVENLPVEEVEDNENII 175


>gi|308063376|gb|ADO05263.1| GTP-binding protein EngA [Helicobacter pylori Sat464]
          Length = 460

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 25/198 (12%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + S  +     E      ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   +
Sbjct: 182 LESLENNAPKEETKEEVIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETI 241

Query: 263 DLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEIS 315
            +    +   DTAGIR    I  +EK  ++RT   +E + + LL+ ++++      ++IS
Sbjct: 242 LIGDQKICFVDTAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKIS 301

Query: 316 FPKNID---FIFIGTKSDLYSTYTEEY---------------DHLISSFTGEGLEELINK 357
              +      I I  K D+     EE                    S      ++E+ +K
Sbjct: 302 SLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPIITTSCLKAHHIDEIKHK 361

Query: 358 IKSILSNKFKKLPFSIPS 375
           I  +     K++P S+ +
Sbjct: 362 IIEVYECFSKRIPTSLLN 379



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 28/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L++ 
Sbjct: 128 DKEKERAYAFSSF-----------------GMPKSFNISVSHNRGISALIDAILSALDLN 170

Query: 394 SLNEKDCGLDII 405
            + E+D   DI+
Sbjct: 171 QIIEQDLDADIL 182


>gi|260655278|ref|ZP_05860766.1| ribosome-associated GTPase EngA [Jonquetella anthropi E3_33 E1]
 gi|260629726|gb|EEX47920.1| ribosome-associated GTPase EngA [Jonquetella anthropi E3_33 E1]
          Length = 440

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 92/243 (37%), Gaps = 28/243 (11%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
           I+KL   +    A   +S   D     S      I  LK  + + +   +L        K
Sbjct: 117 INKLDDWKHDDLAMEAYSLGFDKVIGVSALHDRGIDELKEAVCAVLPDRQLPPEAEEVIK 176

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSS+ N LA +D ++V+D+ GTTRD +  +        +I DTAG+R   
Sbjct: 177 IALVGRPNCGKSSILNRLAGEDRSLVSDVAGTTRDAIDWETAQNSRTFRIVDTAGLRRKS 236

Query: 282 DIV---EKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSD 330
                 E     RT   V+  D+ + + + +                +    + +  K D
Sbjct: 237 RQKGNVEFYSSVRTMQAVDECDVAVFIMDASEPATEQDQRLVAEILDRGKGLVLVVNKWD 296

Query: 331 LY----------STYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           L               EE+           S+ +G GL++L++    +   +  +   ++
Sbjct: 297 LITGERPGDEMTKKLDEEFRFAADAPRLFTSALSGRGLQKLLDLAAGVYDRRRARFSSAL 356

Query: 374 PSH 376
            + 
Sbjct: 357 LNR 359



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKSSLFN L     AIV D PG TRD L   ++       + DT G +   
Sbjct: 4   VSIVGRPNVGKSSLFNRLVGSRRAIVDDQPGVTRDRLFGRVEWGDRSFYLVDTGGLLLRD 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
           DD + +    +    +E +D +L + +  S          ++    +   I +  K D  
Sbjct: 64  DDPIMRSMRGQIQQAIEESDAVLFVVDGPSGVTWMDQDVADVLRKASSRVIVVINKLDDW 123

Query: 331 -----LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNK 365
                    Y+  +D +I  S+    G++EL   + ++L ++
Sbjct: 124 KHDDLAMEAYSLGFDKVIGVSALHDRGIDELKEAVCAVLPDR 165


>gi|254786612|ref|YP_003074041.1| GTP-binding protein EngA [Teredinibacter turnerae T7901]
 gi|259645886|sp|C5BLV6|DER_TERTT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|237684664|gb|ACR11928.1| GTP-binding protein EngA [Teredinibacter turnerae T7901]
          Length = 464

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 92/239 (38%), Gaps = 33/239 (13%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI--SSHISQGKLGEIIRNGYKIVI 224
            +      +L   E   V     + V   +  +  DI   S   +      +    K+ I
Sbjct: 126 DLAIAPFFELGLGEVHSVAAAHGRGVNTLMATVLADIAVESEADEADAERRL----KMAI 181

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L N +  ++  +V D+PGTTRD + ID + +     + DTAG+R   ++ 
Sbjct: 182 IGRPNVGKSTLVNRMLGEERVVVFDMPGTTRDSIYIDYERDEKHYTLIDTAGVRRRKNVK 241

Query: 285 ---EKEGIKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYS 333
              EK  I +T   + +A++++L+ + +     +++     +       +    K D   
Sbjct: 242 LTVEKFSIIKTLQAINDANVVILVMDASEGIVDQDLHLLGHAIESGRALVVALNKWDGLE 301

Query: 334 TYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
              + Y                 H IS+  G G+  L   ++       +K   S  + 
Sbjct: 302 DDHKSYVKTELQRRLSFVDYADLHFISALHGTGVGNLYKSVEKAYQAATEKYSTSFLTR 360



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   AIV +  G TRD    D + EG    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKTRDAIVANFAGLTRDRKYGDAEFEGKRFIVVDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
           + ++    +++   +  +D+IL L +             +     +     +  K D
Sbjct: 65  EGIDSVMAEQSLQAIAESDIILFLVDCRDGLTHVDSQIAQHLRTLHKPTFLVANKVD 121


>gi|160880522|ref|YP_001559490.1| small GTP-binding protein [Clostridium phytofermentans ISDg]
 gi|189037143|sp|A9KLK7|DER_CLOPH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|160429188|gb|ABX42751.1| small GTP-binding protein [Clostridium phytofermentans ISDg]
          Length = 441

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 19/154 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFNALA   ++IV D PG TRD +  D+        + DT GI  E+
Sbjct: 6   VAVVGRPNVGKSTLFNALAGDRISIVKDTPGVTRDRIYADITWLDKQFTLVDTGGIEPES 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
            D++     ++  + +  AD+I+ + ++        N   ++        I +  K D +
Sbjct: 66  KDMMLTYMREQAEIAIATADVIMFVVDVRQGLLDADNKVADMLRRSGKPVILVVNKVDNF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELIN 356
             +  +              +S+ +  G  +L++
Sbjct: 126 DKFMPDVYEFYNLGIGDPVPVSAASMLGFGDLLD 159



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  H     L E      +I I+G  N GKSS+ N L  ++  IV+D+ GTTRD 
Sbjct: 156 DLLDLVVGHFPPEALEEEEDERPRIAIVGKPNVGKSSIINKLLGENRVIVSDVAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +          DTAG+R    I    E+  I RT   VE AD+++++ + N     
Sbjct: 216 IDTAVTWNKKDYVFIDTAGLRRKSKIKEELERFSIIRTVSAVERADVVVVVIDANEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSD------------------LYSTYTEEYDHLISSFTG 348
                  I+  +    I    K D                  + S         +S+ TG
Sbjct: 276 QDAKIAGIAHERGKGIIIAVNKWDAIEKDDKTIYKYTNRIREILSFLPYAEIMFLSAKTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + + +L + I+ ++ N+  ++   + +
Sbjct: 336 QRVTKLFDSIEVVIQNRNLRISTGVLN 362


>gi|326794518|ref|YP_004312338.1| GTP-binding protein engA [Marinomonas mediterranea MMB-1]
 gi|326545282|gb|ADZ90502.1| GTP-binding protein engA [Marinomonas mediterranea MMB-1]
          Length = 445

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 27/184 (14%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
                     ++   G +I ++G  N GKS+L N +  +D  +V D+PGTTRD + I   
Sbjct: 164 EQVAEARDQIQLESKGIRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYQ 223

Query: 264 LEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKK-------- 312
                  + DTAG+R      + VEK  I +T   +++A++++ + + +           
Sbjct: 224 RHDKEYTLIDTAGVRRRKHVKEAVEKFSIVKTLQAIQDANVVICVIDAHEDLVEQDLHMI 283

Query: 313 EISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELIN 356
                     +    K D       E+                 H IS+  G  + +L +
Sbjct: 284 GYVLDAGRGLVIAINKWDGMQKDEREHIKKEVERRLGFVPYAKVHYISALHGTAVGDLYD 343

Query: 357 KIKS 360
            I+ 
Sbjct: 344 TIEE 347



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   A+V D PG TRD    D  L  +   + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDALVADYPGLTRDRKYGDGKLGEHDFIVIDTGGITGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEI----SFPKNIDFIFIGTKSDLYS 333
             ++++   ++   +E AD +L L +    +N   E+        +     +  K+D  +
Sbjct: 65  QGIDEKMASQSLQAIEEADAVLFLVDGRHGLNPADEMIANHLRRSSKPTYLVVNKTDGIN 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELIN 356
                 D           I++  G+G+  LI+
Sbjct: 125 EDIALADFYSVGLGSLYPIAAAHGKGVRSLID 156


>gi|88799909|ref|ZP_01115481.1| predicted GTPase [Reinekea sp. MED297]
 gi|88777340|gb|EAR08543.1| predicted GTPase [Reinekea sp. MED297]
          Length = 458

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 89/235 (37%), Gaps = 34/235 (14%)

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG-----KLGEIIRNGYKIVILGHS 228
           A  DF E    +  +     +    +++ +   + Q      ++  +  +  ++ I+G  
Sbjct: 128 AVADFYELGLGEPVAIAA--SQNRGVRSLLEDVLEQFPEPIEQIDPMEDDSIRLAIIGRP 185

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---E 285
           N GKS+L N +  +D  +V D PGTT D + I  +  G    + DTAG+R   +I    E
Sbjct: 186 NVGKSTLVNRMLGEDRVVVYDHPGTTMDSIYIPYERHGKAYTLIDTAGVRRRKNITEAVE 245

Query: 286 KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTE 337
           K  I +T   +++A++++L+ +               +       +    K D  S   +
Sbjct: 246 KFSIVKTLQAIQDANVVVLVIDAQDGLVDQDMHMLGFALESGRALVIAINKWDGLSEEKK 305

Query: 338 EYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           +                  H IS+  G  +  L   ++        K   +  ++
Sbjct: 306 DSIKTAIDRRMPFLDWADMHFISALHGTNVGHLYESVEEAYDGARSKWSTNHLTN 360



 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN   +   A+V D  G TRD    D  L      + DT G+   +
Sbjct: 5   IALVGRPNVGKSTLFNRFTRTRDALVADWSGLTRDRKYGDGKLGERPFIVIDTGGVSGFE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + +++   +++F  ++ AD +L L +  S          E           +  K+D   
Sbjct: 65  EGLDEAMARQSFAAIDEADAVLFLVDGQSGITSADSFLAEHLRKTQKSVTLVVNKTDGRD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370
                 D           I++    G+  L+  +        +++ 
Sbjct: 125 PDVAVADFYELGLGEPVAIAASQNRGVRSLLEDVLEQFPEPIEQID 170


>gi|224372205|ref|YP_002606577.1| GTP-binding protein EngA [Nautilia profundicola AmH]
 gi|254783161|sp|B9L7G9|DER_NAUPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|223589108|gb|ACM92844.1| ribosome-associated GTPase EngA [Nautilia profundicola AmH]
          Length = 461

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 25/178 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKSSL NAL  ++ AIV+D+ GTT D +  ++  +G+ +   DTAGIR 
Sbjct: 199 IKVAIVGRVNVGKSSLLNALVGEERAIVSDVDGTTIDPIDENIYHDGWNITFVDTAGIRR 258

Query: 280 TDDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
              I  +EK  + RT   +E AD+ +L+ +              +        I +  K 
Sbjct: 259 RSKIKDIEKYALLRTEKVLEEADIAILVIDAKEGIVELDEKIGGLIDKHKNGVIIVANKW 318

Query: 330 DLYSTYTEEYDHL---------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D  +    ++                  +S+ TG  +++L ++I  +  N  K++P +
Sbjct: 319 DENAEEFHKFRKEVYYRFKYLYFAPFLAVSAKTGRNIDKLKDEIIRVYKNYSKRIPTA 376



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 20/172 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGI 277
            K+ ILG  N GKSSLFN + ++  AIV++  GTTRD+   ++ L+     + + DT G+
Sbjct: 2   IKVAILGKPNVGKSSLFNRILRERDAIVSEKAGTTRDIKKREVSLDDDLEEIVLLDTGGL 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPKN-----IDFIFIGTKS 329
            E D++  K   ++     + ADL+L + +   I  ++EI + +N        I +  K 
Sbjct: 62  EERDELFNK-VKEKALEVAKEADLVLYMVDGKTIPDEEEIKYFRNLQKLGKHIILVVNKI 120

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D      + YD           IS     G+ +LI +IK  +  K K    S
Sbjct: 121 DNDKMMEKVYDFYELGADEIFPISVSHNRGVGKLIERIKKFVPKKPKTFEVS 172


>gi|39997324|ref|NP_953275.1| GTP-binding protein Era [Geobacter sulfurreducens PCA]
 gi|39984215|gb|AAR35602.1| GTP-binding protein Era [Geobacter sulfurreducens PCA]
 gi|298506261|gb|ADI84984.1| GTP-binding protein Era [Geobacter sulfurreducens KN400]
          Length = 299

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N +  + + I +D P TTR+ +    +L G  +   DT G
Sbjct: 8   RSGF-VSIIGRPNVGKSTLLNRILGEKIVITSDKPQTTRNRIQGIHNLPGAQIVFIDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS--FPK-NIDFIFIGTK 328
           I      + K  ++     +   DL++LL E N      ++EI+   P  N+    +  K
Sbjct: 67  IHHARSRLNKFMVEEALSSIREVDLVMLLVEANRAPGDQEREIAGLLPSVNVPVFLVVNK 126

Query: 329 SDLYS---------TYTEEYDHLI----SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL            Y E +        S+ TGE +E L+  ++  L       P  I +
Sbjct: 127 IDLIDPDILAERLTAYAELFPFREVVPVSAETGENVERLVEVVRDTLPEGPVYFPDDILT 186

Query: 376 HKRHLYHLSQTVR 388
                + +++ VR
Sbjct: 187 DLPERFIVAEIVR 199


>gi|114794390|pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
           Complex With Gdp
          Length = 436

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 26/226 (11%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   T+    L++  +                    +    L F 
Sbjct: 91  NGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEXR-----------ANIYDFYSLGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   +    L D   L + ++ H       +      +  ++G  N GKSSL NA 
Sbjct: 140 EPYPISG-THGLGLGD---LLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAX 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+++ GTTRD +            I DTAG R+   +    EK  + R    +
Sbjct: 196 LGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGXRKKGKVYETTEKYSVLRALKAI 255

Query: 297 ENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST 334
           + ++++ ++ +     I   K I   +       + +  K D    
Sbjct: 256 DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 301



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  +  + AD+I+        +   + +  +I +      +    K D   
Sbjct: 66  EPFLAQIRQQAEIAXDEADVIIFXVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
                YD           IS   G GL +L++ +     N
Sbjct: 126 XRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 165


>gi|328544034|ref|YP_004304143.1| GTP-binding protein engA [polymorphum gilvum SL003B-26A1]
 gi|326413778|gb|ADZ70841.1| GTP-binding protein engA [Polymorphum gilvum SL003B-26A1]
          Length = 472

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 18/158 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L      + DTAG+ 
Sbjct: 2   GATVAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGEARLGDLRFTVIDTAGLE 61

Query: 279 ETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           + D    E     +T   +  AD++L + +  S          E++   +   I +  K+
Sbjct: 62  DADATSLEGRMRAQTEEAIAEADVVLFVIDARSGVTPLDSHFAEVARRSDRPVILLANKA 121

Query: 330 D-------LYSTYTEEY--DHLISSFTGEGLEELINKI 358
           +       LY  +         IS+  GEGL +L   +
Sbjct: 122 EGRAGEGGLYDAFALGLGDPVAISAEHGEGLADLYEAL 159



 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 76/203 (37%), Gaps = 30/203 (14%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
            +   +   G   R   ++ I+G  NAGKS+L N +  ++  +     G TRD +++D  
Sbjct: 187 EAIEPETPAGTRER-PLRVAIVGRPNAGKSTLINRMIGEERMLTGPEAGITRDSISVDWL 245

Query: 264 LEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE------- 313
              + VK+ DTAGIR    +    EK  +      ++ A+++++  +  +  E       
Sbjct: 246 WRDHHVKLFDTAGIRRKARVQEKLEKLSVADALRAIKFAEVVVVTLDATNAFEKQDLQII 305

Query: 314 -ISFPKNIDFIFIGTKSDLYSTYTEEY------------------DHLISSFTGEGLEEL 354
            +   +    +    K DL       +                     IS   G+G++ L
Sbjct: 306 DLVAREGRALVIAINKWDLVEDREAAWQAIRDAQDRYLNQIRGVQIATISGIQGQGIDRL 365

Query: 355 INKIKSILSNKFKKLPFSIPSHK 377
           +  + +       ++  +  +  
Sbjct: 366 MEAVFTAYDVWNTRISTARLNRW 388


>gi|116627238|ref|YP_819857.1| GTP-binding protein EngA [Streptococcus thermophilus LMD-9]
 gi|122268159|sp|Q03MB1|DER_STRTD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|116100515|gb|ABJ65661.1| Predicted GTPase [Streptococcus thermophilus LMD-9]
          Length = 436

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 66  APFMEQIKHQAGIAMTEADVIVFVVSGKEGVTDADEYVARILYKTNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  + ++    I 
Sbjct: 126 MRADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPTEVEEENPDII 175



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 92/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  +  ++G  N GKSSL NA+  +D  I + I GTTRD 
Sbjct: 154 DVLDAIVENLPT-EVEEENPDIIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDA 212

Query: 258 LTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +  + +D EG    + DTAG+R++  +    EK  + R+   ++ +D++L++  IN+++ 
Sbjct: 213 IDTNFVDSEGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLI------------------SS 345
           I          +       I +  K D          +                    S+
Sbjct: 271 IREYDKRIAGFAHEAGKGIIIVVNKWDTIKKDNHTVANWEADIRDQFQFLSYAPIVFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK I  ++ +++  ++ +
Sbjct: 331 KTKQRLNKLPEMIKRISESQNRRISSAVLN 360


>gi|322388795|ref|ZP_08062392.1| ribosome-associated GTPase EngA [Streptococcus infantis ATCC
           700779]
 gi|321140414|gb|EFX35922.1| ribosome-associated GTPase EngA [Streptococcus infantis ATCC
           700779]
          Length = 436

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIR 278
            K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R
Sbjct: 175 IKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           ++  +    EK  + R    ++ +D++L++  +N+++ I          +       I +
Sbjct: 235 KSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIREYDKRIAGFAHEAGKGMIIV 292

Query: 326 GTKSDLYST------------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K D                              +S+ T + L +L   IK I  ++  
Sbjct: 293 VNKWDTLEKDNHTMKNWEEDIREQFQYLPYAPIIFVSALTKQRLHKLPEMIKQISESQNT 352

Query: 368 KLPFSIPS 375
           ++P ++ +
Sbjct: 353 RIPSAVLN 360



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
               ++   +T + +E AD+I+ +      I    E    K    +   I    K D   
Sbjct: 66  APFMEQIKHQTEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           ISS  G G  ++++ I   L ++ +     + 
Sbjct: 126 MRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLPHEVEDENPDVI 175


>gi|225570970|ref|ZP_03779993.1| hypothetical protein CLOHYLEM_07074 [Clostridium hylemonae DSM
           15053]
 gi|225160432|gb|EEG73051.1| hypothetical protein CLOHYLEM_07074 [Clostridium hylemonae DSM
           15053]
          Length = 311

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 24/222 (10%)

Query: 211 KLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           + GE ++  +K   + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L L+  
Sbjct: 9   EKGERMKKDFKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTLQDG 68

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKN 319
            +   DT GI +  + + +  +      +   D++L L E ++          E     N
Sbjct: 69  QIVFVDTPGIHKAKNKLGEYMVNIAERTLNEVDVVLWLVEPSTFIGAGERHIAEQLKKVN 128

Query: 320 IDFIFIGTKSDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKF 366
              I +  K D+          S Y + YD      +S+  G+  +EL++ +   L    
Sbjct: 129 TPVILVINKVDMVKKEEILEAISAYKDIYDFAEIVPVSARNGDNTDELMSVVMKYLPYGP 188

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           +       + +     +++ +R   + SLNE+      +A +
Sbjct: 189 QFYDEDTVTDQPERQIVAELIREKALHSLNEEIPHGIAVAVD 230


>gi|225873267|ref|YP_002754726.1| ribosome-associated GTPase EngA [Acidobacterium capsulatum ATCC
           51196]
 gi|225793600|gb|ACO33690.1| ribosome-associated GTPase EngA [Acidobacterium capsulatum ATCC
           51196]
          Length = 472

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 96/275 (34%), Gaps = 38/275 (13%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR-------------- 143
            L     +   +        F   ++ L EAE++  ++   TE+                
Sbjct: 52  RLVDTGGIVPDDEALIPAEIFRQARVALEEAEAIVMVVDGRTELAAPDLDLARLLLRTGK 111

Query: 144 --RLSMEGM-SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
              L++  + + +L +    +          I A+   +  + +    +     +     
Sbjct: 112 PLFLAVNKIDTPQLDASAENFRQLGIQNLVAISAEHGHNVGDLLDEVFAVLHFPEPETEP 171

Query: 201 NDISSHISQGKL----------GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
              S   S G            GE  +   ++ I+G  N GKS+L NAL     AIV+ I
Sbjct: 172 EVESEAESDGAAEKPEPLHRTHGEYEQPETRVAIIGRPNVGKSTLLNALTGSSRAIVSPI 231

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE 307
            GTTRD +   ++  G  ++I DTAGIR         EK  +      +E AD+ LL+ +
Sbjct: 232 AGTTRDAVDEVIEHNGQTLRIVDTAGIRRKGKTYLMAEKLSVVMARRHLEAADVALLVID 291

Query: 308 INSKKEIS--------FPKNIDFIFIGTKSDLYST 334
                  S               I +  K D  +T
Sbjct: 292 ATEGVTASDATIGGYAHESGRSVIIVVNKWDAVTT 326



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 22/162 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
             I+G  N GKS+LFN L +   +IV D PG TRD +  ++   G   ++ DT GI  + 
Sbjct: 4   FAIVGRPNVGKSTLFNRLTESRRSIVGDEPGITRDRIYGEVRWAGRTARLVDTGGIVPDD 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----------NIDFIFIGTKSD 330
           + ++  E  ++  + +E A+ I+++ +   + E++ P                    K D
Sbjct: 64  EALIPAEIFRQARVALEEAEAIVMVVD--GRTELAAPDLDLARLLLRTGKPLFLAVNKID 121

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
                    +            S+  G  + +L++++ ++L 
Sbjct: 122 TPQLDASAENFRQLGIQNLVAISAEHGHNVGDLLDEVFAVLH 163


>gi|300704410|ref|YP_003746013.1| GTPase [Ralstonia solanacearum CFBP2957]
 gi|299072074|emb|CBJ43406.1| GTPase involved in ribosome synthesis and maintenance [Ralstonia
           solanacearum CFBP2957]
          Length = 447

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 118/330 (35%), Gaps = 64/330 (19%)

Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLS---MEGMSGEL----------SSLYGQWID 163
           A + G  + +  E +   ++ +T      +   +  + G L            L      
Sbjct: 54  AIDTGGFEPVAKEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRR 113

Query: 164 KLTHI-----RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG-------- 210
            L  +       +     DF E                  +++ +   + Q         
Sbjct: 114 ILLAVNKAEGMKYTAVATDFYELGLGDP--RAISSAHGDGVRDLVDEALDQAFSERPELA 171

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              +   +G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G    
Sbjct: 172 DAAQAHDHGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYT 231

Query: 271 ISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI-- 325
           + DTAG+R+     + +EK  + +T   + +A++++LL +  ++++IS        FI  
Sbjct: 232 LIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLLLD--AQQDISDQDAHIAGFIVE 289

Query: 326 --------GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSI 361
                     K D    +  +                  H IS+    G+  L+  +   
Sbjct: 290 SGRALVIGVNKWDGLDGHARDRIKHDLERKLQFLAFANVHYISAKQRTGIGALMKSVDDA 349

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            +    KLP    +       L + V + +
Sbjct: 350 YAAAMVKLPTPKLTRV-----LQEAVEFQQ 374



 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 18/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            + +  E  K+T   V  AD+++ + +     + ++              +    K++  
Sbjct: 65  KEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINK 357
                  D           ISS  G+G+ +L+++
Sbjct: 125 KYTAVATDFYELGLGDPRAISSAHGDGVRDLVDE 158


>gi|240850057|ref|YP_002971450.1| GTP-binding protein EngA [Bartonella grahamii as4aup]
 gi|240267180|gb|ACS50768.1| GTP-binding protein EngA [Bartonella grahamii as4aup]
          Length = 474

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS+LFN L  + +A+V D PG TRD       L+     + DTAG+ E
Sbjct: 3   LTIAIVGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRRIHAAKLQDLRFDVVDTAGLEE 62

Query: 280 TDD-IVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             D  +E      T   ++ ADLIL + +  S           +        + +  KS+
Sbjct: 63  AGDHTLEGRMRSHTKAAIDEADLILFVFDAKSGITPSDLNFASLVRKSGKPIVLVANKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             +    EY+           IS+  G GL +L + I   +
Sbjct: 123 SRAATGGEYEAWSLGLGEPCLISAEHGLGLSDLRDAIIDAV 163



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
                D +        A   F   ++         ++D +    +      + K      
Sbjct: 152 LSDLRDAIIDAVGSERA---FGNNKEEDITIQPASVSDDVNDLEEEELIYDESK------ 202

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              +I I G  N GKS+L N++ K++  +     G TRD +++D +  G  +K+ DTAG+
Sbjct: 203 -PIRIAIAGRPNTGKSTLINSMLKQERLLTGPEAGLTRDSISVDWEWRGRHIKLFDTAGL 261

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIG 326
           R    I    EK  +  T   +  A++++++ +     E        +   +    +   
Sbjct: 262 RRKSKIQEKLEKLSVADTLRAIRFAEVVVIVFDATIPFEKQDLQIADLVIREGRVPVIAF 321

Query: 327 TKSDLYST 334
            K DL   
Sbjct: 322 NKWDLIEN 329


>gi|119357805|ref|YP_912449.1| GTP-binding protein EngA [Chlorobium phaeobacteroides DSM 266]
 gi|166224325|sp|A1BHZ8|DER_CHLPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|119355154|gb|ABL66025.1| small GTP-binding protein [Chlorobium phaeobacteroides DSM 266]
          Length = 437

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 197 LFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
             L +D+   +   +   + ++    + ++G  N GKSS  NAL   +  IV+DIPGTTR
Sbjct: 154 AELLDDMLDSLPVQEKQLVEKDLPTNLAVVGRPNVGKSSFVNALLGANRLIVSDIPGTTR 213

Query: 256 DVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           D +      +     + DTAG+R+    D  +E     RT   +E  D+ L++ +  +  
Sbjct: 214 DAIDSRFTRKKQDFVLIDTAGLRKRTKIDAGIEYYSSLRTDKAIERCDVALVMIDARTGI 273

Query: 313 E--------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
           E        ++  +    + +  K DL    ++   H 
Sbjct: 274 ENQDMKIINMAVERKRGVLLLINKWDLVEKDSKTSAHY 311



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 19/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS LFN + ++  AIV   PG TRD      + +G    + DT G     
Sbjct: 5   IAIVGRPNVGKSMLFNRILREKSAIVDSTPGVTRDRHISPGEWQGKQFLLMDTGGYCPEG 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPK-------NIDFIFIGTK--- 328
           D++    +++T + + +AD+IL L ++ S     ++   K       +    F   K   
Sbjct: 65  DVISMAMLEQTLMAIRDADIILFLADVRSGLTYDDLEISKLLQRTFQHKQIFFAVNKVET 124

Query: 329 ----SDLYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKL 369
                D  S  +  +   + +S+  G G+ EL++ +   L  + K+L
Sbjct: 125 PQLSIDAESFVSTGFTKPYFVSARDGSGVAELLDDMLDSLPVQEKQL 171


>gi|294155882|ref|YP_003560266.1| GTP-binding protein [Mycoplasma crocodyli MP145]
 gi|291600022|gb|ADE19518.1| GTP-binding protein [Mycoplasma crocodyli MP145]
          Length = 434

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 36/242 (14%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEE-----EDVQNFSSKEVLNDILFLKNDISSHIS 208
           + ++  +   ++  + + +E++ DF         +     S      +  + ++   H+ 
Sbjct: 102 IMNILRKSNKQIIAVANKLESNQDFDYSWYKLGVEKIYAISALHGEGVGEVLDECVKHLD 161

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
                E     +K+ I+G  NAGKSSL N LAK++ +IV++I GTTRD +   + + G  
Sbjct: 162 FTDKQE--DEEFKLSIIGKPNAGKSSLLNNLAKENRSIVSEIAGTTRDSVKSTVQINGQK 219

Query: 269 VKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINSK--------KEISFP 317
             I DTAGI     +VE      + R    +  ADL L++ +  S            +  
Sbjct: 220 YNIIDTAGIMRKSRLVESVDHYALMRAMNSLNEADLSLIIVDATSDISHFDSRIIGYALE 279

Query: 318 KNIDFIFIGTKSDLYSTYTE---EYDH---------------LISSFTGEGLEELINKIK 359
                I +  K DL    T    EY+                 IS+   + +E+LI  I+
Sbjct: 280 NQKPIIVVINKWDLVEKETNTMAEYEKNLRFKFHFVPWVPFVFISAKFNQRIEKLIKTIE 339

Query: 360 SI 361
            +
Sbjct: 340 QV 341



 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 15/168 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+ FN L  K ++IV D PG TRD L  +++  G ++K+ DT GI   
Sbjct: 4   KIAIIGKPNVGKSTFFNRLIGKKISIVYDQPGVTRDRLYENIEWCGRVIKMIDTGGIEIE 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
           +   +++   +  + ++ AD+I+ + +  S+          I    N   I +  K +  
Sbjct: 64  NKPFQEQIQIQAKIAIDEADVIIFIFDGTSEITNDDLFIMNILRKSNKQIIAVANKLESN 123

Query: 331 -----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                 +     E  + IS+  GEG+ E++++    L    K+     
Sbjct: 124 QDFDYSWYKLGVEKIYAISALHGEGVGEVLDECVKHLDFTDKQEDEEF 171


>gi|116328637|ref|YP_798357.1| GTP-binding protein EngA [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330706|ref|YP_800424.1| GTP-binding protein EngA [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122281540|sp|Q04TV4|DER_LEPBJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|122283577|sp|Q04ZS1|DER_LEPBL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|116121381|gb|ABJ79424.1| GTPase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124395|gb|ABJ75666.1| GTPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 487

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 11/130 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           +++ I+G  N+GKSSL NA+   + A+V+D+ GTTRD +   L+     + ++DTAGIR 
Sbjct: 225 FRLAIVGKPNSGKSSLLNAVCGYERAVVSDVAGTTRDSVDTLLEFGNRKLLLTDTAGIRK 284

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
             +T + +E    +RT   +E++DL++ L +              +   K   F+    K
Sbjct: 285 HSKTAEALEYYSYQRTLKAIESSDLVIHLLDAKKGFGDFDKKITSLLQEKGKPFLIAVNK 344

Query: 329 SDLYSTYTEE 338
            D     T++
Sbjct: 345 WDSIEDKTDK 354



 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 23/171 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL--DLEGYLVKISDTAGIR- 278
           + I+G  N GKS+LFN+L KK +AI  D PG TRDVL+  +  + +     + DT G+  
Sbjct: 30  VSIVGRQNVGKSTLFNSLLKKKLAITEDYPGVTRDVLSARVYQEEKDLDFYLCDTPGLDI 89

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----------PKNIDFIFIGT 327
           E  D + +  ++  + ++  +D+I+ L + N                  P +   I+   
Sbjct: 90  ENPDSLSQSILEAAYRQLNESDVIIFLLDKNLVTVADHTLLDYLRKKYGPVDKPIIYCVN 149

Query: 328 KSD--LYSTYTEEY------DHLISSFTG-EGLEELINKIKSILSNKFKKL 369
           K+D  L     EE+      + L  S TG + L  L+ KIK  LS+K  K+
Sbjct: 150 KADKELDEFDLEEFYRMGLPEVLPISATGRKNLGLLLEKIKFFLSSKPGKV 200


>gi|149194988|ref|ZP_01872081.1| GTP-binding protein EngA [Caminibacter mediatlanticus TB-2]
 gi|149134909|gb|EDM23392.1| GTP-binding protein EngA [Caminibacter mediatlanticus TB-2]
          Length = 460

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 25/178 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKSSL NAL   + AIV+DI GTT D +   +   GY +   DTAGIR 
Sbjct: 198 IKVAIVGRVNVGKSSLLNALVGSERAIVSDIDGTTIDPIDETIYFNGYHITFVDTAGIRR 257

Query: 280 TDDI--VEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFI-FIGTKS 329
              I  +EK  + RT   +E AD+ +L+ +        + K      K+ +    +  K 
Sbjct: 258 RSKIKDIEKYALMRTEKVLEEADVAILVLDAQNGIVELDEKIGGLIQKHKNACIIVANKW 317

Query: 330 D--------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D          S   + + +L        S+ T   +++L  KI  +  N  K++P S
Sbjct: 318 DEAKMDYKKFESEVRDRFKYLYYAPFMVVSAKTKRNIDKLKEKIVYVYGNYTKRIPTS 375



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 20/183 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGI 277
            K+ ILG  N GKSS FN + ++  AIV++  GTTRD+    + L+     + + DT G+
Sbjct: 2   IKVAILGKPNVGKSSFFNRIIRERDAIVSEKAGTTRDIKKRVVSLDDDLEEIILIDTGGL 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKS 329
            E D++  K   ++ F   + ADLIL + +   I  ++EI + +     N   I +  K 
Sbjct: 62  EERDELFNK-VKEKAFEVAKEADLILYMVDGRTIPDEEEIKYFRKLQKLNKPLILVVNKV 120

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           D        YD           IS     G+ +LI +IK  +  K K +  +       L
Sbjct: 121 DNDKLMEGVYDFYSLGADEVFPISIAHNRGVGKLIERIKEFVPKKQKIIEATSIEEDIPL 180

Query: 381 YHL 383
             L
Sbjct: 181 EEL 183


>gi|312277722|gb|ADQ62379.1| GTP-binding protein engA [Streptococcus thermophilus ND03]
          Length = 436

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 66  APFMEQIKHQAGIAMTEADVIVFVVSGKEGVTDADEYVARILYKTNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  + ++    I 
Sbjct: 126 MRADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPTEVEEENPDII 175



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  +  ++G  N GKSSL NA+  +D  I + I GTTRD 
Sbjct: 154 DVLDAIVENLPT-EVEEENPDIIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDA 212

Query: 258 LTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +  + +D EG    + DTAG+R++  +    EK  I R+   ++ +D++L++  IN+++ 
Sbjct: 213 IDTNFVDSEGQEYTMIDTAGMRKSGKVYENTEKYSIMRSMRAIDRSDVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLI------------------SS 345
           I          +       I +  K D          +                    S+
Sbjct: 271 IREYDKRIAGFAHEAGKGIIIVVNKWDTIKKDNHTVANWEADIRDQFQFLSYAPIVFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK I  ++ +++  ++ +
Sbjct: 331 KTKQRLNKLPEMIKRISESQNRRISSAVLN 360


>gi|121602708|ref|YP_988693.1| GTP-binding protein EngA [Bartonella bacilliformis KC583]
 gi|166224307|sp|A1URU0|DER_BARBK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|120614885|gb|ABM45486.1| GTP-binding protein EngA [Bartonella bacilliformis KC583]
          Length = 473

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 22/178 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS+LFN L  K +A+V D PG TRD        +     + DTAG+ E
Sbjct: 3   LTIAIVGRPNVGKSTLFNRLVGKKLALVDDKPGVTRDRRIHAARFQDLYFDVIDTAGLEE 62

Query: 280 TDD-IVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            DD  +E     +T + ++ ADLIL + +  S           +        + +  KS+
Sbjct: 63  ADDHTLEGRMRSQTKVAIDEADLILFVLDAKSGITSSDLNFASLVRKSEKPIVLVANKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL----SNKFKKLPFSIPS 375
             +    +Y+           IS+  G GL +L + I   +    +   KK   +I  
Sbjct: 123 SKAATEGKYEAWSLGLGEPCAISAEHGLGLSDLRDAIVDAVGKDKAFDNKKEEDTIIQ 180



 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 29/182 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I I G  N GKS+L N++  +D  +     G TRD ++ID +     +K+ DTAG+R 
Sbjct: 204 IRIAIAGRPNTGKSTLINSMLGQDRLLTGPEAGVTRDSISIDWEWRSRHIKLFDTAGLRR 263

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              I    EK  +  T   +  A++++++ +  +  E        +   +    I    K
Sbjct: 264 KSKIQEKLEKLSVTDTLRAIRFAEVVVIVFDSTAPFEKQDLQIVDLVIREGRVPIIAFNK 323

Query: 329 SDLYSTYTEEYDHLISSFT------------------GEGLEELINKIKSILSNKFKKLP 370
            DL     E    L                       G+G+++L+  I  I     +++ 
Sbjct: 324 WDLIENCQEILADLHEKCACLLPQVRGLRAVPLSGQYGQGIDKLMENITMIHRIWNRRIS 383

Query: 371 FS 372
             
Sbjct: 384 TG 385


>gi|227488997|ref|ZP_03919313.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091073|gb|EEI26385.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 537

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 75/168 (44%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N    +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 99  VAIVGRPNVGKSSLVNRFLGRREAVVEDTPGVTRDRVSYLAEWNGQRFWVQDTGGWDPDA 158

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
             +     ++  + +E AD+I+++ +    I +  E+        ++  I +  K D   
Sbjct: 159 KGIHAAIARQAEVAMETADVIVMVVDTNVGITASDEVMARNLQRSDVPVILVANKVDSPK 218

Query: 334 TYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              E         +Y + +S+  G+G  +++++I  +  ++ ++   +
Sbjct: 219 QEAETAEFWGLGLDYPYPVSAQHGKGGADVLDQILELFPDEPRQTSIT 266



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 86/235 (36%), Gaps = 33/235 (14%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAK 241
           D     S +       + + I            I  G + + ++G  N GKSSL N L+ 
Sbjct: 232 DYPYPVSAQHGKGGADVLDQILELFPDEPRQTSITEGPRRVALVGKPNVGKSSLLNKLSN 291

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVEN 298
           ++ ++V ++ GTT D +   + LEG L K  DTAG+R         E     RT   ++ 
Sbjct: 292 EERSVVDNVAGTTVDPVDSLVQLEGGLWKFIDTAGLRRKVKNASGHEYYASLRTKTAIDA 351

Query: 299 ADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------- 339
           A++ +L+ + +            +        +    K DL      +Y           
Sbjct: 352 AEVCILIIDASEPISEQDQKLLGMIVESGKALVIAFNKWDLVDEDRRDYLDREIDEQLAH 411

Query: 340 -----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                   IS+ TG  L++L   +   L +  +++     ++      L Q +  
Sbjct: 412 VPWAKRINISAKTGRALQKLEPVMLEALESWDQRVSTGQLNNW-----LRQAIAA 461


>gi|94970562|ref|YP_592610.1| GTP-binding protein Era [Candidatus Koribacter versatilis Ellin345]
 gi|94552612|gb|ABF42536.1| GTP-binding protein Era [Candidatus Koribacter versatilis Ellin345]
          Length = 324

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 90/204 (44%), Gaps = 23/204 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTA 275
           R+G+ + I+G  NAGKS+L NAL  + +AIVT  P TTR+ +   + +     + + DT 
Sbjct: 4   RSGF-VSIIGRPNAGKSTLLNALVGEKIAIVTHKPQTTRNRIQGIVTVPKKGQIVLVDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGT 327
           G+ + D  + K  ++  +  +E  DL+L + ++  K E      +S  K      + +  
Sbjct: 63  GVHKPDKTLNKRMMQEVYDALEGCDLLLYIHDVTHKFEKEDEYTLSLVKKTGQPVMLLLN 122

Query: 328 KSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL +              +  +    IS+  G GL+ L  K+   L       P    
Sbjct: 123 KIDLIAKPKLLEIITQFSTLHDFKEIIPISAAKGSGLDILRKKVLQSLPVGPHYFPDDQI 182

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +   +  ++ +R   +   +++
Sbjct: 183 TDQPERFLAAEIIREQVLVCAHQE 206


>gi|284931171|gb|ADC31109.1| predicted GTPase EngA [Mycoplasma gallisepticum str. F]
          Length = 456

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 11/168 (6%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FS         S E    I  L ++I    +Q    +         I+G  N GKSSL N
Sbjct: 134 FSLGFGKPMIISAEHAIGIGDLLDEIIRLKNQFANKKEQELVATFCIIGKPNVGKSSLLN 193

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFL 294
            L KK+  +V+DIPGTTRD +         L K+ DTAGIR    I   +EK  ++RT  
Sbjct: 194 QLLKKERVLVSDIPGTTRDAIDATFSYNKELYKVIDTAGIRRKGKIETRIEKFSVQRTQQ 253

Query: 295 EVENADLILLL----KEINSKKE----ISFPKNIDFIFIGTKSDLYST 334
            +  + +ILL+     +++ + E    + +  N+  I +  K DL   
Sbjct: 254 AISRSKMILLMLDGSVDLSEQDEVIGGLCYEANLPTIIVVNKWDLVKK 301



 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 19/174 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+LFN L K  +AIV D PG TRD +  D++      +I DT G+  
Sbjct: 2   LKVAIVGKPNVGKSTLFNRLIKNRIAIVDDTPGITRDRIFGDVEWLTKRFQIIDTGGLTT 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSD 330
             DI ++   ++    ++ AD+IL +          +  + K +   KN   IF+  K +
Sbjct: 62  ESDIFQRAIEQQVQFAIDEADIILFVCSYKEGINADDHYAAKLLKKHKNKKIIFVLNKIE 121

Query: 331 --------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                   L S ++  +   +  S+    G+ +L+++I  + +    K    + 
Sbjct: 122 NQNKDQLNLSSYFSLGFGKPMIISAEHAIGIGDLLDEIIRLKNQFANKKEQELV 175


>gi|309798864|ref|ZP_07693125.1| GTP-binding protein EngA [Streptococcus infantis SK1302]
 gi|308117513|gb|EFO54928.1| GTP-binding protein EngA [Streptococcus infantis SK1302]
          Length = 436

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIR 278
            K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R
Sbjct: 175 IKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           ++  +    EK  + R    ++ +D++L++  +N+++ I          +       I +
Sbjct: 235 KSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIREYDKRIAGFAHEAGKGMIIV 292

Query: 326 GTKSDLYST------------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K D                              +S+ T + L +L   IK I  ++  
Sbjct: 293 VNKWDTLEKDNHTMKNWEEDIREQFQYLPYAPIIFVSALTKQRLHKLPEMIKQISESQNT 352

Query: 368 KLPFSIPS 375
           ++P ++ +
Sbjct: 353 RIPSAVLN 360



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      I    E    K    +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           ISS  G G  ++++ I   L ++ ++    + 
Sbjct: 126 MRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLPHEIEEENPDVI 175


>gi|306824736|ref|ZP_07458080.1| ribosome-associated GTPase EngA [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432947|gb|EFM35919.1| ribosome-associated GTPase EngA [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 436

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIR 278
            K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R
Sbjct: 175 IKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           ++  +    EK  + R    ++ +D++L++  +N+++ I          +       I +
Sbjct: 235 KSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIREYDKRIAGFAHEAGKGMIIV 292

Query: 326 GTKSDLYST------------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K D                              +S+ T + L +L   IK I  ++  
Sbjct: 293 VNKWDTLEKDNHTMKKWEEDIREQFQYLPYAPIVFVSALTKQRLHKLPEMIKRISESQNT 352

Query: 368 KLPFSIPS 375
           ++P ++ +
Sbjct: 353 RIPSAVLN 360



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      I    E    K    +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + +D           ISS  G G  ++++ I   L ++ ++    + 
Sbjct: 126 MRNDIFDFYALGLGEPLPISSVHGIGTGDVLDAIVENLPHEVEEENPDVI 175


>gi|257867660|ref|ZP_05647313.1| GTP-binding protein engA [Enterococcus casseliflavus EC30]
 gi|257801743|gb|EEV30646.1| GTP-binding protein engA [Enterococcus casseliflavus EC30]
          Length = 234

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D PG TRD +    +  G    + DT GI  +D
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGIDLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLYS 333
           +    +   +  + ++ AD+I+        + + +     + +  N   I    K D   
Sbjct: 66  EPFMDQIKHQAEIAIDEADVIVFITSAREGVTDADELVARLLYKSNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             T+ Y+           IS   G G+ +++++     +N+ ++   SI 
Sbjct: 126 MRTDIYEFYGLGLGDPYPISGSHGLGIGDVLDEAVKHFTNEAEEEDDSII 175



 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ++   H +  +  E   +  K  ++G  N GKSSL NA+  ++  IV+DI GTTRD 
Sbjct: 154 DVLDEAVKHFTN-EAEEEDDSIIKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDA 212

Query: 258 LTIDLDLE-GYLVKISDTAGI 277
           +      E G    + DTAG+
Sbjct: 213 IDTHFTSESGQEFTMIDTAGM 233


>gi|256370714|ref|YP_003108539.1| GTP-binding protein EngA [Candidatus Sulcia muelleri SMDSEM]
 gi|256009506|gb|ACU52866.1| GTP-binding protein EngA [Candidatus Sulcia muelleri SMDSEM]
          Length = 438

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + I+G SN GKS+LFN L     +IV    G TRD      +  G    + DT G     
Sbjct: 5   VSIVGRSNVGKSTLFNRLIGYKKSIVNSKSGVTRDRNYGFCNWNGIDFCLIDTGGYTNKF 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           ++I +K+  ++ F  +E +DLIL L + ++K         +I          +  K DL 
Sbjct: 65  NNIFDKKICEQFFFALEESDLILFLVDPSNKILEIDYEISKILHKLKKTIYLVINKIDLL 124

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKK 368
                  +         + ISS  G G  EL++ I  I  N    
Sbjct: 125 KKKENISEFFKLGFSKKYCISSINGAGTGELLDSIVEIFKNTETD 169



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/129 (34%), Positives = 63/129 (48%), Gaps = 11/129 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L N L KK+  IV++I GTTRD L +     G    + DTAGIR+ 
Sbjct: 181 KLAIVGRPNVGKSTLINTLLKKNQNIVSNISGTTRDSLEVFYKKFGIECILVDTAGIRKK 240

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
           + I   +E   + R    ++N+D+ LLL +  S  E        I    N   I +  K 
Sbjct: 241 NKIKENIEFYSVMRAIKSIKNSDVCLLLIDSISGMESQDLNIFKIIENNNKGIILLINKC 300

Query: 330 DLYSTYTEE 338
           DL      E
Sbjct: 301 DLIKNKFLE 309


>gi|157364142|ref|YP_001470909.1| GTP-binding protein Era [Thermotoga lettingae TMO]
 gi|189037681|sp|A8F6R1|ERA_THELT RecName: Full=GTPase Era
 gi|157314746|gb|ABV33845.1| GTP-binding protein Era [Thermotoga lettingae TMO]
          Length = 296

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 77/187 (41%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKSSL N+   + V IV++ P TTR+ +        + +  +DT GI +  
Sbjct: 6   VTLVGRPNAGKSSLINSFIGRKVLIVSEKPQTTRNKIRCIYTDSYHQIIFTDTPGIHKPV 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
             + +  +K     ++  DL+L + +             ++      +   +  K DL  
Sbjct: 66  HRLGEFMVKVAIQAMKGVDLVLFVVDATKGFGEPEKRICDLVKLSKTETFLVINKIDLAK 125

Query: 334 TYT-------EEYD-----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            Y         E D        S    EG+EEL+  IK+ +       P ++   +   +
Sbjct: 126 NYEFLAKTIVSECDCFSKVFFTSVVKNEGIEELLQAIKNCMPEGPMYFPENMLIDRPISF 185

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 186 QIAEIIR 192


>gi|290579757|ref|YP_003484149.1| phosphoglycerate dehydrogenase [Streptococcus mutans NN2025]
 gi|254996656|dbj|BAH87257.1| phosphoglycerate dehydrogenase [Streptococcus mutans NN2025]
          Length = 436

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 92/225 (40%), Gaps = 36/225 (16%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D    SS   +     L   + +  ++ +  E   +  K  ++G  N GKSSL NA+  +
Sbjct: 140 DPYPVSSAHGIGTGDVLDAIVDNLPTEAQ--EESSDIIKFSLIGRPNVGKSSLINAILGE 197

Query: 243 DVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVEN 298
           D  I + + GTTRD +     D EG    + DTAG+R++  +    EK  + R    ++ 
Sbjct: 198 DRVIASPVAGTTRDAIDTTFTDEEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDR 257

Query: 299 ADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLI----- 343
           +D++L++  +N+++ I          +       + +  K D                  
Sbjct: 258 SDIVLMV--LNAEEGIREYDKRIAGFAHEAGKGIVVVVNKWDAIKKDNRTVAQWEADIRD 315

Query: 344 -------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                        S+ T + L +L + IK +  ++  ++P S+ +
Sbjct: 316 NFQYIPYAPIVFVSAVTKQRLHKLPDVIKQVSQSQNTRIPSSVLN 360



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   VAIVGRPNVGKSALFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +               +I +  +   I    K D   
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFVVSAKEGITDADEYVAKILYRTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +  YD           +SS  G G  ++++ I   L  + ++    I 
Sbjct: 126 MRSAIYDFYALGLGDPYPVSSAHGIGTGDVLDAIVDNLPTEAQEESSDII 175


>gi|225352117|ref|ZP_03743140.1| hypothetical protein BIFPSEUDO_03732 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157364|gb|EEG70703.1| hypothetical protein BIFPSEUDO_03732 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 709

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 84/415 (20%), Positives = 142/415 (34%), Gaps = 80/415 (19%)

Query: 49  SLRYFFGLDGRILDKGLLI-----VFPSPE------------SFTGEDSA------EFHV 85
            +     LD   +D+ L+       F                   GED +      E   
Sbjct: 43  CMNKGIDLDAETIDEQLVTETVGEFFTEGHFDISVDPDDSKVYADGEDISDVIRSSEVSS 102

Query: 86  H----GGIAVVNGILEELAKMPNLRLANPGEFSRRA-FENGKIDLLEAES----LADLIS 136
           H      I  V  +L    +    R A    FS  A       D+    +    +  L++
Sbjct: 103 HVSKVSNIIPVRHVLIAAQRAYIAREAASDSFSEGAGVVAEGRDITTVVAPDAEVRVLLT 162

Query: 137 SETE-MQRRLSMEGMSG----------ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV- 184
           +  E  Q R S +   G             S    +      + +   +DL+F E  DV 
Sbjct: 163 AREEVRQARRSGQSTDGVGSENVAARDAADSKVTNFTSAAEGVLTVDNSDLNFGETLDVL 222

Query: 185 ----QNFSSKEVLNDILFLKNDISSHISQGKLGEII---------RNGYK----IVILGH 227
                +   ++         +D    + +G  G I          R+G K    + ++G 
Sbjct: 223 VRIVDDAIEEQQYRQYASNLDDYE--LDEGDEGLIDGSSFVGGERRSGPKPVGVLAVVGR 280

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     + +E  
Sbjct: 281 PNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIESA 340

Query: 288 GIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST--YTE 337
              +  + V+ AD ++L+ +      N+ + I                K D   +   T 
Sbjct: 341 IASQAQIAVQLADAVVLVVDGQVGLTNTDERIVKMLRASGKPVTLAVNKVDDRESEYLTA 400

Query: 338 EY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           E+        + IS+  G G+ EL++     L    K   F  PSH R +  + +
Sbjct: 401 EFWKMGLGEPYGISAMHGRGIGELLDAALDSLKKAEKTSGFLTPSHLRRVALVGR 455



 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 107/298 (35%), Gaps = 53/298 (17%)

Query: 126 LEAESLADLISSETEMQRRLS---------MEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
            + E +   I+S+ ++  +L+           G++     +            +     +
Sbjct: 332 ADVEGIESAIASQAQIAVQLADAVVLVVDGQVGLTNTDERIVKMLRAS-GKPVTLAVNKV 390

Query: 177 DFSEEEDVQNFSSKEVLNDI--------LFLKNDISSHISQGKLGEIIRNGY-------K 221
           D  E E +     K  L +           +   + + +   K  E   +G+       +
Sbjct: 391 DDRESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALDSLKKAEKT-SGFLTPSHLRR 449

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           + ++G  N GKSSL N LA ++  +V D+ GTTRD +   + ++G      DTAGI+   
Sbjct: 450 VALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGIKRRL 509

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
                 E     RT   +E ++L L+L + +        K            + +  K D
Sbjct: 510 HKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRCIVLVFNKWD 569

Query: 331 LYSTYTE---------EYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L   +           E+D         +S+ TG     L   ++  L +  K++P  
Sbjct: 570 LMDDFDRQRMERLWKTEFDRVTWAQRVNLSAKTGWHTNRLARAMRGALESWDKRIPTG 627


>gi|167836401|ref|ZP_02463284.1| GTP-binding protein EngA [Burkholderia thailandensis MSMB43]
          Length = 445

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 36/202 (17%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI I+G  N GKS+L N L  +D  I  D+PGTTRD + +D +  G    + DTAG+R
Sbjct: 179 GTKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKQYTLIDTAGLR 238

Query: 279 ETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI---------- 325
                 + +EK  + +T   + +A++++LL +  ++++IS        F+          
Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILLLD--AQQDISDQDAHIAGFVVEQGRALVVG 296

Query: 326 GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    +  E                  H IS+    G+  L+  +    +   KKL
Sbjct: 297 VNKWDGLDPHVRERTKADLARKLKFLDFAKFHFISAAEKTGIGALMRSVDDAYAAAMKKL 356

Query: 370 PFSIPSHKRHLYHLSQTVRYLE 391
           P    +       L + V + +
Sbjct: 357 PTPKLTR-----ALIEAVEFQQ 373



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D +  E  ++T   VE AD+++ + +     + ++ S              +  K++  
Sbjct: 65  KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  D           IS+  G+G+ ++IN+   +      +   
Sbjct: 125 KYTAVASDFYELGLGDPRAISAAHGDGVTDMINEALEVAYAGQPEESE 172


>gi|304414053|ref|ZP_07395421.1| GTP-binding protein [Candidatus Regiella insecticola LSR1]
 gi|304283267|gb|EFL91663.1| GTP-binding protein [Candidatus Regiella insecticola LSR1]
          Length = 491

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 11/122 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  IV D+PGTTRD + I +        + DTAG+R+
Sbjct: 205 IKLAIVGRPNVGKSTLTNRILGEERVIVYDLPGTTRDSIYIPMTRNERQYILIDTAGVRK 264

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
              +    EK  + +T   +E+++++LL+ +     S +++S            + +  K
Sbjct: 265 RGKVTQTVEKFSVIKTLKAIEDSNVVLLVIDAQDGISDQDLSLLGFILNSGRSLVIVINK 324

Query: 329 SD 330
            D
Sbjct: 325 WD 326



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V+D PG TRD      + E +   + DT G+  T+
Sbjct: 5   VALVGRPNVGKSTLFNHLTRTRSALVSDFPGLTRDRQYGRAEFESHEFIVIDTGGVDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLYS 333
             VE     +  L +E AD++L + +     + + +EI+     +      +  K+D  +
Sbjct: 65  QGVETLMASQALLAIEEADIVLFIVDGRAGMLPADQEITQHLRNRQKSTFLLVNKTDGIN 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
           + +   D           I++  G G+ +L+ ++
Sbjct: 125 SDSAIADFYSLGLGEVYAIAASHGRGVAQLLERV 158


>gi|154246486|ref|YP_001417444.1| GTP-binding protein EngA [Xanthobacter autotrophicus Py2]
 gi|238686724|sp|A7IIE4|DER_XANP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|154160571|gb|ABS67787.1| small GTP-binding protein [Xanthobacter autotrophicus Py2]
          Length = 458

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 18/170 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L     +I DTAG+ E
Sbjct: 3   FSLAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDARLGDLSFRIVDTAGLEE 62

Query: 280 TDDIV-EKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
            D    E     +T   + +AD IL + +          +  ++        I +  KS+
Sbjct: 63  ADAASLEGRMRAQTEAAIGHADAILFMIDARIGLTPTDRAFADLVRKCGKPVILLANKSE 122

Query: 331 LYS---------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                                 S+  GEGL +L + I   L  + +  P 
Sbjct: 123 GRGGEAGTLEAFALGLGTPLPFSAEHGEGLSDLYDAICDALPEQTRPEPE 172



 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 111/320 (34%), Gaps = 49/320 (15%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSG 152
            +     L  A+      R     +  +  A+++  +I +      T+      +    G
Sbjct: 53  RIVDTAGLEEADAASLEGRMRAQTEAAIGHADAILFMIDARIGLTPTDRAFADLVRK-CG 111

Query: 153 ELSSLYGQWID-------KLTHIRSFIEADLDFS--------EEEDVQNFSSKEVLNDIL 197
           +   L     +        L      +   L FS        +  D    +  E      
Sbjct: 112 KPVILLANKSEGRGGEAGTLEAFALGLGTPLPFSAEHGEGLSDLYDAICDALPEQTRPEP 171

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
               D  +   + +  +  R   K+ +LG  NAGKS+L N L  +D  +     G TRD 
Sbjct: 172 EEDEDADTDFVEEEADDKPRRPIKVTVLGRPNAGKSTLINRLLGEDRLLTGPEAGITRDS 231

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +++++   G  +++ DTAG+R+    +D +EK         ++ A++++LL +     E 
Sbjct: 232 ISVEVTYAGAKLEVFDTAGLRKRARIEDKLEKLSAADALRAMKFAEVVVLLVDATHPFEE 291

Query: 314 -------ISFPKNIDFIFIGTKSDLYS-----------------TYTEEYDHLISSFTGE 349
                  +   +    +    KSDL +                          +S   G 
Sbjct: 292 QDLRIADLVAREGRALVIGYNKSDLVARGGLITRLREDVDRLLPQVKGVPIVPVSGLMGH 351

Query: 350 GLEELINKIKSILSNKFKKL 369
           GL++L+  I S      K++
Sbjct: 352 GLDKLVAAISSAHKVWNKRV 371


>gi|332523593|ref|ZP_08399845.1| ribosome biogenesis GTPase Der [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314857|gb|EGJ27842.1| ribosome biogenesis GTPase Der [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 436

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 34/194 (17%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKIS 272
           E   N  +  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + 
Sbjct: 169 EDNENIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTSFTDSDGQEFTMI 228

Query: 273 DTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKN 319
           DTAG+R++  I    EK  + R    ++ +D++L++  IN+++ I          +    
Sbjct: 229 DTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGIREYDKRIAGFAHEAG 286

Query: 320 IDFIFIGTKSDLY-------STYTEEY-----------DHLISSFTGEGLEELINKIKSI 361
              I +  K D         S + E+               +S+ T + L +L   IK I
Sbjct: 287 KGMIIVVNKWDTIAKDNHTVSKWEEDIRDQFQFLSYAPIIFVSALTKQRLNKLPELIKRI 346

Query: 362 LSNKFKKLPFSIPS 375
             ++ +++P ++ +
Sbjct: 347 SDSQSRRIPSAVLN 360



 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + +
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      +    E    + +  +   I    K D   
Sbjct: 66  APFMEQIKHQAQIAMDEADVIVFVVSGKEGVTDADEYVAKMLYRTHKPVILAINKVDNPE 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD            SS  G G  ++++ I   L  +  +   +I 
Sbjct: 126 MRNDIYDFYSLGLGDPYPLSSVHGIGTGDVLDAIVENLPVEEVEDNENII 175


>gi|257066409|ref|YP_003152665.1| small GTP-binding protein [Anaerococcus prevotii DSM 20548]
 gi|256798289|gb|ACV28944.1| small GTP-binding protein [Anaerococcus prevotii DSM 20548]
          Length = 439

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 102/265 (38%), Gaps = 34/265 (12%)

Query: 106 RLANPGEFSRRAFE---NGKIDLLEAESLADLISSETEMQRRLSM---------EGMSGE 153
           R+ +  E+  + F     G +D+   E +   I ++ E     +          EG++  
Sbjct: 41  RIVDKVEWQNKEFLLVDTGGLDISNKEVMNTEIKAQVEKALIETNLILFVVDGKEGVNPY 100

Query: 154 LSSLYGQWID----------KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
              +  +             KL   +   +    +    D  +  S E    +  L + I
Sbjct: 101 DVDIANEIRKYNKPVIIVANKLDSFKIPDDIYDFYQFGFDDMSMISAEQSKGLGDLLDKI 160

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
            S I      +I     +I I+G  NAGKSSL N L  ++  IVTDI GTTRD +     
Sbjct: 161 VSFIDFSSFDQIEDE-TRIAIIGKPNAGKSSLVNLLLNEERMIVTDIAGTTRDAVDSYWQ 219

Query: 264 LEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP 317
              +   + DTAG+R    +    E    +RTF  V+++++ L L + N   ++++    
Sbjct: 220 YNDHNYVLIDTAGLRRKSKVKENVEYYANQRTFDAVDSSEICLFLIDANVGVTEQDAKIA 279

Query: 318 -----KNIDFIFIGTKSDLYSTYTE 337
                +    I    K DL    T 
Sbjct: 280 GYAHNQKKAIIIAVNKWDLVDKETN 304



 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 20/160 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G +N GKS+LFN L  K  +I  DI G TRD +   ++ +     + DT G+    
Sbjct: 6   VTLVGRTNVGKSTLFNRLVGKRKSITEDISGVTRDRIVDKVEWQNKEFLLVDTGGLDISN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIGTKSDL 331
            +++  E   +    +   +LIL +          +++   EI    N   I +  K D 
Sbjct: 66  KEVMNTEIKAQVEKALIETNLILFVVDGKEGVNPYDVDIANEIR-KYNKPVIIVANKLDS 124

Query: 332 YSTYTEEYDH---------LISSFTGEGLEELINKIKSIL 362
           +    + YD          +IS+   +GL +L++KI S +
Sbjct: 125 FKIPDDIYDFYQFGFDDMSMISAEQSKGLGDLLDKIVSFI 164


>gi|306829944|ref|ZP_07463131.1| ribosome-associated GTPase EngA [Streptococcus mitis ATCC 6249]
 gi|304427955|gb|EFM31048.1| ribosome-associated GTPase EngA [Streptococcus mitis ATCC 6249]
          Length = 436

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIR 278
            K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R
Sbjct: 175 IKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           ++  +    EK  + R    ++ +D++L++  +N+++ I          +       I +
Sbjct: 235 KSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIREYDKRIAGFAHEAGKGMIIV 292

Query: 326 GTKSDLYST------------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K D                              +S+ T + L +L   IK I  ++  
Sbjct: 293 VNKWDTLEKDNHTMKNWEEDIREQFQYLPYAPIVFVSALTKQRLHKLPEMIKQISESQNT 352

Query: 368 KLPFSIPS 375
           ++P ++ +
Sbjct: 353 RIPSAVLN 360



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 21/172 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI----------DFIFIGTKSDL 331
               ++   +  + +E AD+I+ +  ++ K+ I+                 I    K D 
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFV--VSGKEGITDADEYVARKLYKTLKPVILAVNKVDN 123

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                + +D           ISS  G G  ++++ I   L ++ ++    + 
Sbjct: 124 PEMRNDIFDFYALGLGEPLPISSVHGIGTGDVLDAIVENLPHEVEEENPDVI 175


>gi|325479528|gb|EGC82624.1| ribosome biogenesis GTPase Der [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 439

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 75/171 (43%), Gaps = 12/171 (7%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +    D  +  S E    +  L + I S I      E I +  +I I+G  NAGKSSL N
Sbjct: 135 YQFGFDDLSMISAEQSKGLGDLLDKIISFIDFSAY-EAIEDETRIAIIGKPNAGKSSLVN 193

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFL 294
            L  +D  IVTDI GTTRD +            + DTAG+R    +    E    +RTF 
Sbjct: 194 LLLNEDRMIVTDIAGTTRDAVDSYWTYNDNNYVLIDTAGLRRKSKVKENVEYYANQRTFD 253

Query: 295 EVENADLILLLKEIN---SKKEISFP----KNIDFIFIG-TKSDLYSTYTE 337
            V++A++ L L + N   ++++         N   + I   K DL    T 
Sbjct: 254 AVDSAEVCLFLIDANVGVTEQDAKIAGYAHNNKKAMIIAVNKWDLVDKDTN 304



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G +N GKS+LFN L  K  +I  D+ G TRD +   ++ +     + DT G+    
Sbjct: 6   VTLVGRTNVGKSTLFNRLVGKKKSITEDVSGVTRDRIVDKVEWQNNEFLLVDTGGLDISN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTKSDLY 332
            +I+  E   +    +   D+IL + +        +I         N   I +  K D +
Sbjct: 66  KEIMNTEVKSQVEKALLETDMILFVVDGKEGVNPYDIDIANEIRKYNKPVIIVANKLDSF 125

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSIL 362
               + YD          +IS+   +GL +L++KI S +
Sbjct: 126 KIPDDIYDFYQFGFDDLSMISAEQSKGLGDLLDKIISFI 164


>gi|158425952|ref|YP_001527244.1| GTP-binding protein EngA [Azorhizobium caulinodans ORS 571]
 gi|172047845|sp|A8HVL5|DER_AZOC5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|158332841|dbj|BAF90326.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 453

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 18/164 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L     +I DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDARLGDLAFRIVDTAGLEE 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
            D D +E     +T   + +AD +L L +          +   ++       I +  KS+
Sbjct: 63  ADADSLEGRMRAQTETAIGDADALLFLIDARVGLTPTDRAFASLARRSGKPTILVANKSE 122

Query: 331 ---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                                +S+  GEGL +L + I   L  +
Sbjct: 123 GRGGEAGAMEAYELGLGAPVPLSAEHGEGLSDLYDAICEALPAQ 166



 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 121/324 (37%), Gaps = 45/324 (13%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ----RRLSMEGMSGE 153
            +     L  A+      R     +  + +A++L  LI +   +        S+   SG+
Sbjct: 53  RIVDTAGLEEADADSLEGRMRAQTETAIGDADALLFLIDARVGLTPTDRAFASLARRSGK 112

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213
            + L     +        +EA           +    E L+D   L + I   +      
Sbjct: 113 PTILVANKSEGRGGEAGAMEAYELGLGAPVPLSAEHGEGLSD---LYDAICEALPAQTAP 169

Query: 214 EII-----------RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           +                 K+ ++G  NAGKS+L N L  +D  +     G TRD +++++
Sbjct: 170 QEEDEETEEAEANPNRPIKVAVIGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSISVEV 229

Query: 263 DLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ 313
              G  +++ DTAG+R+    +D +EK         ++ A+++++L +     E      
Sbjct: 230 TWNGRALEVFDTAGLRKRARIEDKLEKLSAADALRAMKFAEVVVVLMDATKPFEEQDLRI 289

Query: 314 --ISFPKNIDFIFIGTKSDL-----YSTYTEEYDHL-----------ISSFTGEGLEELI 355
             +   +    +    KSDL     +S   EE DH            +S  TG GL++L+
Sbjct: 290 ADLVVREGRALVLGYNKSDLVGPAAFSRLREEADHWLPQVKGVPIVPLSGLTGRGLDKLV 349

Query: 356 NKIKSILSNKFKKLPFSIPSHKRH 379
             I +  +    ++P +  +    
Sbjct: 350 EAIAATYAVWNTRIPTNPLNRYLQ 373


>gi|319794354|ref|YP_004155994.1| ribosome-associated GTPase enga [Variovorax paradoxus EPS]
 gi|315596817|gb|ADU37883.1| ribosome-associated GTPase EngA [Variovorax paradoxus EPS]
          Length = 447

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 83/201 (41%), Gaps = 32/201 (15%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +    K+ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTA
Sbjct: 177 VNKPIKLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQRFELIDTA 236

Query: 276 GIRETD---DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIF 324
           G+R      + +EK  + +T   +E+A+++LLL +      +    I+          + 
Sbjct: 237 GLRRKGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVI 296

Query: 325 IGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKK 368
              K D   +Y  E                  H IS+   +GL  +   I     +  +K
Sbjct: 297 AINKWDAVDSYQREQIQRQIETRLPFLKFASLHFISAIKRQGLGPVWQAIAQAHKSATRK 356

Query: 369 LPFSIPSHKRHLYHLSQTVRY 389
           +   + +       L + V++
Sbjct: 357 MSTPVLTR-----LLLEAVQF 372



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 18/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L +   AIV D  G TRD    +  L  +   + DT G   + 
Sbjct: 5   VALVGRPNVGKSTLFNRLTQTRDAIVADYAGLTRDRHYGNGRLGKHEFIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD-- 330
              + KE  K+T   V  AD+++ + +     S ++              +    K++  
Sbjct: 65  GSGIYKEMAKQTRQAVAEADVVIFVVDAREGLSAQDHDIANELRRLGKPCVLAANKAEGM 124

Query: 331 -----LYSTYTEEYD--HLISSFTGEGLEELIN 356
                L   Y   +   H +S+  G+G+ +L+ 
Sbjct: 125 HDGTKLVDFYELGFGDVHGVSAAHGQGMRDLVE 157


>gi|281491251|ref|YP_003353231.1| GTP-binding protein [Lactococcus lactis subsp. lactis KF147]
 gi|281374992|gb|ADA64510.1| GTP-binding protein [Lactococcus lactis subsp. lactis KF147]
          Length = 436

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIR 278
            K  ++G  N GKSSL NA+  +D  I + I GTTRD +    +D E     + DTAG+R
Sbjct: 175 IKFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTHFVDSEDQEFVMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           ++  I    EK  + R    ++ +D++L++  IN+++ I          +       + +
Sbjct: 235 KSGKIYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGIREYDMRIAGFAHEAGKGILIV 292

Query: 326 GTKSDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K D      +                       +S+ TG+ L +L + IK I   +  
Sbjct: 293 VNKWDTLEKDNDTMKNFELEIRTKFKFLDYAPIVYVSAKTGQRLNKLPDMIKEIHHAQNL 352

Query: 368 KLPFSIPS 375
           ++  S+ +
Sbjct: 353 RISSSVLN 360



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV DIPG TRD +    +       I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDIPGVTRDRIYATGEWLTRKFNIIDTGGIELSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYS 333
           +    E   +  + +  AD+I+ + +          +   I +  +   I +  K D   
Sbjct: 66  EPFMTEIRAQAEIAMTEADVIITVVDGETGITDADEAVANILYRTDKPVILVVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              E +D           +S+  G G  ++++ I   L N+ ++   ++ 
Sbjct: 126 RRMEIFDFYSLGLGDPYPVSAVHGIGTGDVLDAIVQNLPNEIEEENENVI 175


>gi|270293072|ref|ZP_06199283.1| ribosome-associated GTPase EngA [Streptococcus sp. M143]
 gi|270279051|gb|EFA24897.1| ribosome-associated GTPase EngA [Streptococcus sp. M143]
          Length = 436

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIR 278
            K  ++G  N GKSSL NA+  +D  I + + GTTRD +     D +G    + DTAG+R
Sbjct: 175 IKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           ++  +    EK  + R    ++ +D++L++  +N+++ I          +       I +
Sbjct: 235 KSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGIREYDKRIAGFAHEAGKGMIIV 292

Query: 326 GTKSDLYST------------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K D                              +S+ T + L +L   IK I  ++  
Sbjct: 293 VNKWDTLEKDNHTMKKWEEDIREQFQYLPYAPIVFVSALTKQRLHKLPEMIKQISESQNT 352

Query: 368 KLPFSIPS 375
           ++P ++ +
Sbjct: 353 RIPSAVLN 360



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      I    E    K    +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           ISS  G G  ++++ I   L ++ ++    + 
Sbjct: 126 MRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLPHEVEEENPDVI 175


>gi|91775967|ref|YP_545723.1| small GTP-binding protein domain-containing protein
           [Methylobacillus flagellatus KT]
 gi|91709954|gb|ABE49882.1| Small GTP-binding protein domain [Methylobacillus flagellatus KT]
          Length = 499

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 71/178 (39%), Gaps = 27/178 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L NAL  ++  I  D PGTTRD + +DL+  G    I DTAG+R  
Sbjct: 180 KVAIVGRPNVGKSTLVNALLGEERVIAFDQPGTTRDSIYLDLERNGKRYTIIDTAGVRRR 239

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +    EK  + +T   +E A++ +L+ +                       +    K 
Sbjct: 240 GKVFEAVEKFSVIKTMQAIEEANVAILVVDAQEGITEQDAHVSAYILDSGRALVVAVNKW 299

Query: 330 DLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           D       E+                 H IS+   +GL EL + + +       KL  
Sbjct: 300 DGLEDDKREWIKREIDRKLQFLDFAKFHYISALRKKGLGELFHSVDAAYKAAMAKLST 357



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           IV++G  N GKS+LFN L K   A+V D+PG TRD       +      + DT G     
Sbjct: 6   IVLVGRPNVGKSTLFNRLTKTRDALVADLPGLTRDRHYGRGVVGSKPYLVVDTGGFEPLV 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           D  + KE  ++T L ++ AD+++ L +  +          E         +    K++  
Sbjct: 66  DSGILKEMARQTLLAIDEADVVIFLVDGRNGLAPQDKVIAERLRKSQRPILLAVNKTEGM 125

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  +           ISS  GEG+ +L+           ++   
Sbjct: 126 QRAIASAEFHELGLGHPLSISSAHGEGVRDLVELALENFPEPGEEEES 173


>gi|322373918|ref|ZP_08048453.1| ribosome-associated GTPase EngA [Streptococcus sp. C150]
 gi|321277290|gb|EFX54360.1| ribosome-associated GTPase EngA [Streptococcus sp. C150]
          Length = 436

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +      +    E    I +  +   I    K D   
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVARILYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  + ++    I 
Sbjct: 126 MRADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLPTEIEEENPDII 175



 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 93/210 (44%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  +  ++G  N GKSSL NA+  +D  I + I GTTRD 
Sbjct: 154 DVLDAIVENLPT-EIEEENPDIIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDA 212

Query: 258 LTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +  + +D EG    + DTAG+R++  +    EK  + R+   ++ +D++L++  IN+++ 
Sbjct: 213 IDTNFVDSEGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGIIIVVNKWDTIKKDNHTVANWEADIREQFQFLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK I  ++ +++  ++ +
Sbjct: 331 ETKQRLNKLPEMIKRISESQNRRISSAVLN 360


>gi|317403342|gb|EFV83855.1| GTP-binding protein engA [Achromobacter xylosoxidans C54]
          Length = 451

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 27/166 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N L  ++  I  D+PGTTRD + ID + +G    + DTAG+R+
Sbjct: 186 IKLAIVGRPNVGKSTLINTLMGEERVIAFDMPGTTRDAIEIDFERDGRRYTLIDTAGLRK 245

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              +    EK  + +T   +E ++++LL+ +  ++                   +    K
Sbjct: 246 RGKVFEAVEKFSVIKTLQAIEASNVVLLMLDAQTEISEQDAHIAGFVLETGRAVVVAVNK 305

Query: 329 SDLYSTYTEEYD----------------HLISSFTGEGLEELINKI 358
            D      +E                  H IS+  G+G++ L+  +
Sbjct: 306 WDGLDGEEKERIEREFMRKLRFLSFARVHTISALRGQGIKPLLKSV 351



 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 70/183 (38%), Gaps = 20/183 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + ++G  N GKS+LFN L +   A+V D  G TRD    +  +      + DT G     
Sbjct: 7   VALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYGEGRVGEIPFIVIDTGGFEPVA 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIG---TKSDL 331
            D +  E  ++T   +  AD+++ L +  +       +  +  +      +     K++ 
Sbjct: 67  KDGILLEMARQTRQAIAEADVVVFLVDARAGLNAHDHEIATLLRKSGQQRVLLAVNKAEG 126

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELIN-KIKSILSNKFKKLPFSIPSHKRHLY 381
                   +           IS+  G+G+ +LI   ++ +     ++   +      H  
Sbjct: 127 MGAGAAIAEFHELGLGQPYPISAAHGDGIVDLIELALQDLAEPPAEEEEPAEEGEHDHRI 186

Query: 382 HLS 384
            L+
Sbjct: 187 KLA 189


>gi|227875339|ref|ZP_03993481.1| GTP-binding protein EngA [Mobiluncus mulieris ATCC 35243]
 gi|227844244|gb|EEJ54411.1| GTP-binding protein EngA [Mobiluncus mulieris ATCC 35243]
          Length = 517

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + VA+V D PG TRD +  D D  G    + DT G     
Sbjct: 84  VAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVGV 143

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             ++K    +  + +E AD+ L + + N        +   +        I +  K D   
Sbjct: 144 KGLDKAVATQAEIAIEMADVSLFVVDANVGATATDEAMMRLLRASKKPVILVANKVDSER 203

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
              +               S+  G G+ EL++ +   L 
Sbjct: 204 AEADASGLWNLGLGEPYPISALHGRGVGELLDVLLDALP 242



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N+LA    ++V+D PGTTRD +   L+L+G      DTAGI+  
Sbjct: 258 RVALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVDEVLELDGKEWVFVDTAGIKRR 317

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
                  +   + R    +E+A++ L+L +              +        + +  K 
Sbjct: 318 IKQTVGADYYSVLRAQSAIESAEVALVLLDGGEPLSEQDVKVVNLVVESGRALVLVNNKW 377

Query: 330 DLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL   Y ++                    I++ TG     ++  +++ L     ++  S
Sbjct: 378 DLVDEYRQQELKREQELDLAHVSWAPKINIAAKTGWHTNRIVRALEAALEGWTTRIGTS 436


>gi|194290002|ref|YP_002005909.1| gtp-binding protein enga [Cupriavidus taiwanensis LMG 19424]
 gi|238692737|sp|B3R1J8|DER_CUPTR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|193223837|emb|CAQ69846.1| Ribosome-Associated GTP-binding protein protein [Cupriavidus
           taiwanensis LMG 19424]
          Length = 447

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 114/300 (38%), Gaps = 59/300 (19%)

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           +  ++AD +  +T  +  L++    G                  +     DF E      
Sbjct: 99  QDRAIADYLR-KTGRRIMLAVNKAEG----------------MKYTSVAADFYELGMGDP 141

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRN------GYKIVILGHSNAGKSSLFNALA 240
           ++      D +    D +  ++  +  E+         G KI I+G  N GKS+L N L 
Sbjct: 142 YAISAAHGDGVRELVDEAIELAVQERPELAEEASDEGKGVKIAIVGRPNVGKSTLVNTLI 201

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVE 297
            ++  I  D+PGTTRD + ++ +  G    + DTAG+R      + +EK  + +T   + 
Sbjct: 202 GEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSIA 261

Query: 298 NADLILLLKEINSKKEISFPKNIDFIFI----------GTKSDLYSTYTEEYD------- 340
           +A++++LL +  ++++IS        FI            K D    +T +         
Sbjct: 262 DANVVILLLD--AQQDISDQDAHIAGFIVESGRALVVGVNKWDGLDGHTRDRIKHDLERK 319

Query: 341 ---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                    H +S+    G+  L+  +    +    KLP    +       L + V + +
Sbjct: 320 LQFLSFANFHFVSARERTGIGALMRSVDDAYAAAMVKLPTPQLTRV-----LQEAVEFQQ 374



 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN + +   A+V D+PG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRMTRSRDALVADLPGLTRDRHYGEGRIGERPFIAIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
            + +  E  K+T   V  AD+++ + +          +  +         +    K++  
Sbjct: 65  KEGIVAEMAKQTKQAVVEADVVIFIVDGRLGLAPQDRAIADYLRKTGRRIMLAVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
              +   D           IS+  G+G+ EL+++   +   +  +L
Sbjct: 125 KYTSVAADFYELGMGDPYAISAAHGDGVRELVDEAIELAVQERPEL 170


>gi|311068799|ref|YP_003973722.1| GTP-binding protein EngA [Bacillus atrophaeus 1942]
 gi|310869316|gb|ADP32791.1| GTP-binding protein EngA [Bacillus atrophaeus 1942]
          Length = 436

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV D PG TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFMTQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
                YD           IS   G GL +L++       N
Sbjct: 126 MRANVYDFYSLGFGEPYPISGTHGLGLGDLLDAAAEHFKN 165



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 82/226 (36%), Gaps = 26/226 (11%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I   T+    L++  +                    +    L F 
Sbjct: 91  NGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR-----------ANVYDFYSLGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E   +   +    L D   L +  + H       +      +  ++G  N GKSSL NA+
Sbjct: 140 EPYPISG-THGLGLGD---LLDAAAEHFKNIPETKYNEEVVQFCLIGRPNVGKSSLVNAM 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+++ GTTRD +            I DTAG+R+   +    EK  + R    +
Sbjct: 196 LGEERVIVSNVAGTTRDAVDTMFSYNQQDFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 255

Query: 297 ENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST 334
           + ++++ ++ +     I   K I   +       + +  K D    
Sbjct: 256 DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 301


>gi|146340695|ref|YP_001205743.1| GTP-binding protein EngA [Bradyrhizobium sp. ORS278]
 gi|166224310|sp|A4YUE1|DER_BRASO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|146193501|emb|CAL77517.1| GTP-binding protein, essential for cell growth [Bradyrhizobium sp.
           ORS278]
          Length = 456

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/319 (17%), Positives = 115/319 (36%), Gaps = 39/319 (12%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSS 156
            +     L     G  + R  E  +  +  A++L  +I +   +     +    +     
Sbjct: 53  TIIDTAGLDEGPKGSLTARMQEQTETAIALADALFFVIDARVGLTPADRAFADFARRADK 112

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
                 +K       + A   ++         S E    +  L + +S  +      +  
Sbjct: 113 PVLLLANKSEGKHGELGAMESYALGLGDPIQISAEHGEGMGELYDALSKIVPPSDDEDDE 172

Query: 217 R---------NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           R            ++ I+G  NAGKS+L N L  ++  + +   GTTRD + ++++ +G 
Sbjct: 173 REETDEERASRPIRVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTRDSIAVEVEWKGR 232

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--- 321
             +I DTAG+R    I    EK  +      V  A++++L+ +  ++ E    +  D   
Sbjct: 233 GFRIFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMLDAQNRFEEQDLRIADLVE 292

Query: 322 -----FIFIGTKSDL-------YSTYTEEYDHLISSFT-----------GEGLEELINKI 358
                 +    K DL        S    + DH +   T           GEG++ L+  I
Sbjct: 293 REGRALVLAVNKWDLMEAQPGQISALRRDADHWLPQITGAPIVAVSGLMGEGIDRLMQAI 352

Query: 359 KSILSNKFKKLPFSIPSHK 377
               +   +++P +  +  
Sbjct: 353 VEAYAVWNRRVPTAALNRW 371



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 18/162 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I I+G  N GKS+LFN L  + +A+V D+PG TRD    +  L      I DTAG+ E
Sbjct: 3   FTIAIIGRPNVGKSTLFNRLVGQKLALVDDMPGVTRDRREGEAKLHDLHFTIIDTAGLDE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
                      ++T   +  AD +  + +          +  + +   +   + +  KS+
Sbjct: 63  GPKGSLTARMQEQTETAIALADALFFVIDARVGLTPADRAFADFARRADKPVLLLANKSE 122

Query: 331 ---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                                IS+  GEG+ EL + +  I+ 
Sbjct: 123 GKHGELGAMESYALGLGDPIQISAEHGEGMGELYDALSKIVP 164


>gi|307307991|ref|ZP_07587709.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti BL225C]
 gi|307319941|ref|ZP_07599364.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti AK83]
 gi|306894481|gb|EFN25244.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti AK83]
 gi|306901395|gb|EFN31999.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti BL225C]
          Length = 476

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 18/170 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L     +I DTAG+ E
Sbjct: 3   FTVAIIGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            + D ++     +T   ++ ADL L + +  +          E+   +    + +  KS+
Sbjct: 63  SSPDSLQGRMWAQTEAAIDEADLSLFVVDAKAGLTPADQTLAEMLRRRGKPVVVVANKSE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              +    YD           IS+  G+G+ +L + I + L  +    P 
Sbjct: 123 ARGSEGGFYDAFTLGLGEPCPISAEHGQGMLDLRDAIVAALGEERAFPPA 172



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 38/230 (16%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
              D +        A   F   EDV   +           +++      + +        
Sbjct: 154 DLRDAIVAALGEERA---FPPAEDVAETNVDIRPAAGEGTEDE------EVEPAYDETKP 204

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R 
Sbjct: 205 LRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRR 264

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      +  A+ ++++ +     E        +   +    +    K
Sbjct: 265 KAKVQEKLEKLSVADALRAIRFAETVVIVFDATVPFEKQDLQIVDLVLREGRAAVLAFNK 324

Query: 329 SDLYSTY------------------TEEYDHLISSFTGEGLEELINKIKS 360
            DL   +                         IS  TG GL+ L+  I  
Sbjct: 325 WDLVENWQALLVDLREKTERLLPQARGIRAVPISGHTGYGLDRLMQAIIE 374


>gi|329121290|ref|ZP_08249917.1| ribosome-associated GTPase EngA [Dialister micraerophilus DSM
           19965]
 gi|327470224|gb|EGF15687.1| ribosome-associated GTPase EngA [Dialister micraerophilus DSM
           19965]
          Length = 443

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           + I+G  N GKS++ N LA+K V+IV D+PG TRD +  D         + DT GI  RE
Sbjct: 6   VAIVGRPNVGKSTIINGLAQKRVSIVEDLPGVTRDRIYCDAQWLDREFTLIDTGGIEFRE 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDL 331
             D +      +  L +E AD+IL + ++         +  EI        +    K D 
Sbjct: 66  EADQISDGIRMQAQLAIEEADVILFVTDVRVGLLDDDVTIAEILRKTGKPVVVAVNKVDT 125

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            +   + Y+           IS+    G  +L++KI         +    I 
Sbjct: 126 EAQEMDVYEFYALGLGDPIGISASNRVGFGDLLDKISEGFPKYEARESEDII 177



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 12/150 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + IS    + +  E   +  +  I+G  N GKS+L N+L   + ++V D  GTTRD 
Sbjct: 156 DLLDKISEGFPKYEARES-EDIIRTAIVGRPNVGKSTLVNSLLGYERSLVADEMGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +      +G    + DTAG+R+    D+ +EK  + R+   +++ D+ + + +       
Sbjct: 215 IDSLWTHKGKKFVLVDTAGMRKKNKIDEPLEKYSVIRSIRAIDDCDVAVFVLDAKDMLTE 274

Query: 309 NSKKEISF--PKNIDFIFIGTKSDLYSTYT 336
             KK I +        I +  K D+    T
Sbjct: 275 QDKKIIGYIHEAGKGLILMVNKWDIVEKDT 304


>gi|300776276|ref|ZP_07086134.1| ribosome-associated GTPase EngA [Chryseobacterium gleum ATCC 35910]
 gi|300501786|gb|EFK32926.1| ribosome-associated GTPase EngA [Chryseobacterium gleum ATCC 35910]
          Length = 436

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 11/147 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +DI       +  +      KI I G  N GKS+L NAL   +  IVTDI GTTRD 
Sbjct: 154 DLLDDIVRDFPTTEYKDPFEGLPKITIAGRPNVGKSTLTNALLDVERNIVTDIAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAG+R    +    E   + R+   +E +D+++++ +     E 
Sbjct: 214 IQTLYNKFGHEFVLVDTAGMRRKSKVNEDLEFYSVMRSIRSIEYSDVVIIMVDATQGWES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYS 333
                  ++       + +  K DL  
Sbjct: 274 QDMNIFGLAQKNRKGIVILVNKWDLIE 300



 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 67/168 (39%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L ++  AIV    G TRD      D  G    + DT G    T
Sbjct: 5   VAIVGRPNVGKSTLFNRLLERREAIVDSTAGVTRDRHYGKSDWNGVDFTVIDTGGYDVGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEI---SFPKNIDFIFIGTKSDLY 332
           DDI E+E  K+  L V+ A  I+ +  +     ++  EI       N     +  K D  
Sbjct: 65  DDIFEEEIRKQVQLAVDEATSIIFMMNVEEGLTDTDHEIYRLLRRSNKPIYIVINKVDSA 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                  +            SS TG G  +L++ I         K PF
Sbjct: 125 KEELPATEFYQLGIDKYYTLSSATGSGTGDLLDDIVRDFPTTEYKDPF 172


>gi|77919006|ref|YP_356821.1| GTP-binding protein Era [Pelobacter carbinolicus DSM 2380]
 gi|77545089|gb|ABA88651.1| GTP-binding protein Era [Pelobacter carbinolicus DSM 2380]
          Length = 303

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 93/211 (44%), Gaps = 22/211 (10%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           + +  +  R+G+ + I+G  N GKS+L N++  + +AI ++ P TTR+ +    +     
Sbjct: 4   ENRSEKPFRSGF-VAIIGRPNVGKSTLLNSVLGQKIAITSNKPQTTRNRILGIYNQPDAQ 62

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNI 320
           V   DT G+ +   ++ +  + +      + D++L+L E N +         E     N+
Sbjct: 63  VLFLDTPGVHKAKGMLNRYMVDQALSTCGDVDVVLMLVEANDRLGGGDDYVLEQVSRSNV 122

Query: 321 DFIFIGTKSD---------LYSTYTEEY----DHLISSFTGEGLEELINKIKSILSNKFK 367
             I +  K D         L   YT +Y       +S+ TGEG E+L++ +   L    +
Sbjct: 123 PVILVINKVDLIHRPELLPLIEAYTGKYAFSEIIPVSALTGEGTEQLVSSLVKYLPEGPR 182

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                + +     + +++ +R   +   +++
Sbjct: 183 YYAEDMVTDLPERFIVAEMIREQILKQTHQE 213


>gi|295110181|emb|CBL24134.1| ribosome-associated GTPase EngA [Ruminococcus obeum A2-162]
          Length = 441

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVTWLDKSFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + ++ AD+I+ + ++            ++        + +  K D  
Sbjct: 66  GDIILSQMREQAQIAIDTADVIVFITDVQQGLVDSDAKVADMLRRSQKPVVLVVNKVDSV 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILS 363
             Y  +              IS+    G+ +++++I     
Sbjct: 126 QKYMMDVYEFYNLGIGEPIAISAANRTGIGDMLDEIVKEFP 166



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 82/207 (39%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ++I     +    +   +  KI ++G  N GKSSL N L  +D  IV+DI GTTRD 
Sbjct: 156 DMLDEIVKEFPEDADTDEDDDIPKIAVVGKPNVGKSSLINKLLGEDRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +  +       DTAG+R    I    E+  + RT   VE AD+++++ +       
Sbjct: 216 VDAKVKWKDREYIFIDTAGLRRKGKIKEELERYSVIRTVTAVERADVVVVVIDATEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------------------ISSFTG 348
                  I+  +    +    K D      +                       IS+ +G
Sbjct: 276 QDAKIAGIAHERGKGVVIAVNKWDAVEKDDKTIYKHTNRIREVLAYMPYAELVFISAKSG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L  L   I +++ N+  ++   + +
Sbjct: 336 QRLPRLFETIDAVIENQTLRIQTGVLN 362


>gi|56476106|ref|YP_157695.1| GTP-binding protein EngA [Aromatoleum aromaticum EbN1]
 gi|81821192|sp|Q5P7B7|DER_AZOSE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|56312149|emb|CAI06794.1| GTP-binding protein engA [Aromatoleum aromaticum EbN1]
          Length = 442

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 27/193 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKS+  N+L  ++  I  D+PGTTRD + I  + +G    + DTAG+R  
Sbjct: 178 RIAIVGRPNVGKSTFVNSLLGEERVIAFDMPGTTRDAIAIPFERDGRHYTLIDTAGLRRR 237

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +    EK  + +T   +E A++++L+ + +                     +    K 
Sbjct: 238 GKVFEAVEKFSVIKTLQAIEQANVVVLVLDASQDISDQDAHIAGFILEAGRALVVAVNKW 297

Query: 330 DLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           D    Y  E                  H IS+  G G+  ++  + +  +     L    
Sbjct: 298 DDVDDYRRELIKQDLTRKLNFLSFARFHYISALKGAGVAAVMKSVDAAYAAAMVNLSTPR 357

Query: 374 PSHKRHLYHLSQT 386
            +         Q 
Sbjct: 358 LTRTMQAALAKQA 370



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           IV++G  N GKS+LFN L K   A+V D PG TRD       +      + DTAG     
Sbjct: 5   IVLVGRPNVGKSTLFNRLTKTRDALVADQPGLTRDRHYGIGRVGDRDYLVVDTAGFDPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLY 332
            D +  E  ++    +  AD +L + +  S      ++I+            +  KS+  
Sbjct: 65  KDGIMHEMARQAEQAIAEADALLFMVDGRSGLTPHDEQIAARLRRAGRPVYLVVNKSEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  +           +S+  GEG+++L++ +        +    
Sbjct: 125 ERTMVAAEFHALGLGDPLPVSASHGEGVKQLLDLVLGAFPPDVEPEED 172


>gi|15672737|ref|NP_266911.1| GTP-binding protein EngA [Lactococcus lactis subsp. lactis Il1403]
 gi|26006736|sp|Q9CHH6|DER_LACLA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|12723672|gb|AAK04853.1|AE006309_2 GTP-binding protein [Lactococcus lactis subsp. lactis Il1403]
 gi|326406306|gb|ADZ63377.1| GTP-binding protein [Lactococcus lactis subsp. lactis CV56]
          Length = 436

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIR 278
            K  ++G  N GKSSL NA+  +D  I + I GTTRD +    +D E     + DTAG+R
Sbjct: 175 IKFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTHFVDSEDQEFVMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           ++  I    EK  + R    ++ +D++L++  IN+++ I          +       + +
Sbjct: 235 KSGKIYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGIREYDMRIAGFAHEAGKGILIV 292

Query: 326 GTKSDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K D      +                       +S+ TG+ L +L + IK I   +  
Sbjct: 293 VNKWDTLEKDNDTMKNFELEIRTKFKFLDYAPIVYVSAKTGQRLNKLPDMIKEIHHAQNL 352

Query: 368 KLPFSIPS 375
           ++  S+ +
Sbjct: 353 RISSSVLN 360



 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + ++IV DIPG TRD +    +       I DT GI  +D
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDIPGVTRDRIYATGEWLTRKFNIIDTGGIELSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYS 333
           +    E   +  + +  AD+I+ + +          +   I +  +   I +  K D   
Sbjct: 66  EPFMTEIRAQAEIAMTEADVIIAVVDGETGITDADEAVANILYRTDKPVILVVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              E +D           +S+  G G  ++++ I   L N+ ++   ++ 
Sbjct: 126 RRMEIFDFYSLGLGDPYPVSAVHGIGTGDVLDAIVQNLPNEIEEENENVI 175


>gi|306818602|ref|ZP_07452325.1| ribosome-associated GTPase EngA [Mobiluncus mulieris ATCC 35239]
 gi|304648775|gb|EFM46077.1| ribosome-associated GTPase EngA [Mobiluncus mulieris ATCC 35239]
          Length = 526

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + VA+V D PG TRD +  D D  G    + DT G     
Sbjct: 93  VAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVGV 152

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             ++K    +  + +E AD+ L + + N        +   +        I +  K D   
Sbjct: 153 KGLDKAVATQAEIAIEMADVSLFVVDANVGATATDEAMMRLLRASKKPVILVANKVDSER 212

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
              +               S+  G G+ EL++ +   L 
Sbjct: 213 AEADASGLWNLGLGEPYPISALHGRGVGELLDVLLDALP 251



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N+LA    ++V+D PGTTRD +   L+L+G      DTAGI+  
Sbjct: 267 RVALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVDEVLELDGKEWVFVDTAGIKRR 326

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
                  +   + R    +E+A++ L+L +              +        + +  K 
Sbjct: 327 IKQTVGADYYSVLRAQSAIESAEVALVLLDGGEPLSEQDVKVVNLVVESGRALVLVNNKW 386

Query: 330 DLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL   Y ++                    I++ TG     ++  +++ L     ++  S
Sbjct: 387 DLVDEYRQQELKREQELDLAHVSWAPKINIAAKTGWHTNRIVRALEAALEGWTTRIGTS 445


>gi|269978226|ref|ZP_06185176.1| ribosome-associated GTPase EngA [Mobiluncus mulieris 28-1]
 gi|269933735|gb|EEZ90319.1| ribosome-associated GTPase EngA [Mobiluncus mulieris 28-1]
          Length = 547

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + VA+V D PG TRD +  D D  G    + DT G     
Sbjct: 114 VAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVGV 173

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             ++K    +  + +E AD+ L + + N        +   +        I +  K D   
Sbjct: 174 KGLDKAVATQAEIAIEMADVSLFVVDANVGATATDEAMMRLLRASKKPVILVANKVDSER 233

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
              +               S+  G G+ EL++ +   L 
Sbjct: 234 AEADASGLWNLGLGEPYPISALHGRGVGELLDVLLDALP 272



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 95/261 (36%), Gaps = 30/261 (11%)

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
               +M  +            +K+   R+  +A   ++         S      +  L +
Sbjct: 206 ATDEAMMRLLRASKKPVILVANKVDSERAEADASGLWNLGLGEPYPISALHGRGVGELLD 265

Query: 202 DISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
            +   +       + R   +  ++ ++G  N GKSSL N+LA    ++V+D PGTTRD +
Sbjct: 266 VLLDALPTVAAHRVERPADSTPRVALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPV 325

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE-- 313
              L+L+G      DTAGI+         +   + R    +E+A++ L+L +        
Sbjct: 326 DEVLELDGKEWVFVDTAGIKRRIKQTVGADYYSVLRAQSAIESAEVALVLLDGGEPLSEQ 385

Query: 314 ------ISFPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGEGL 351
                 +        + +  K DL   Y ++                    I++ TG   
Sbjct: 386 DVKVVNLVVESGRALVLVNNKWDLVDEYRQQELKREQELDLAHVSWAPKINIAAKTGWHT 445

Query: 352 EELINKIKSILSNKFKKLPFS 372
             ++  +++ L     ++  S
Sbjct: 446 NRIVRALEAALEGWTTRIGTS 466


>gi|163856334|ref|YP_001630632.1| GTP-binding protein EngA [Bordetella petrii DSM 12804]
 gi|229710727|sp|A9IK66|DER_BORPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|163260062|emb|CAP42363.1| putative GTP-binding protein [Bordetella petrii]
          Length = 451

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 27/189 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N L  ++  I  D+PGTTRD + ID + +G    + DTAG+R 
Sbjct: 186 IKLAIVGRPNVGKSTLINTLLGEERVIAFDLPGTTRDAIEIDFERDGRKYTLIDTAGLRR 245

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              +    EK  + +T   +E ++++LL+ +  ++                   +    K
Sbjct: 246 RGKVFEAVEKFSVIKTLQAIEASNVVLLMLDAQTEVSEQDAHIAGFVLETGRAVVVAINK 305

Query: 329 SD----------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D                     +    H IS+  G+G++ ++  + +  +  F KL   
Sbjct: 306 WDGLDIDQRERIEREFRRKLRFLSFAPTHTISALKGQGIKPVLKSVVAAHAAAFAKLSTP 365

Query: 373 IPSHKRHLY 381
             + + H  
Sbjct: 366 KLTRELHAA 374



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 74/183 (40%), Gaps = 20/183 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D  G TRD    +  +      + DT G     
Sbjct: 7   VALVGRPNVGKSTLFNRLTRSRAALVADYSGLTRDRHYGEGRVGDTPFIVIDTGGFEPVA 66

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEINS------------------KKEISFPKNIDF 322
              + +E  ++T   +  AD+++ L +  +                  ++ +      + 
Sbjct: 67  KTGILREMARQTRQAIAEADVVVFLVDARAGVNAHDHEIAQLLRKSGQQRVVLAVNKAEG 126

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN-KIKSILSNKFKKLPFSIPSHKRHLY 381
           + +G  +  +        + IS+  G+G+ +LI   ++ ++  + +  P +      H  
Sbjct: 127 MGVGNATSEFHELGLGTPYPISAAHGDGIVDLIGLALQDLVEPEPEPAPDAADLPPDHRI 186

Query: 382 HLS 384
            L+
Sbjct: 187 KLA 189


>gi|16264869|ref|NP_437661.1| GTP-binding protein EngA [Sinorhizobium meliloti 1021]
 gi|26006728|sp|Q92UK6|DER_RHIME RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|15141008|emb|CAC49521.1| putative GTP-binding protein [Sinorhizobium meliloti 1021]
          Length = 476

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 18/170 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L     +I DTAG+ E
Sbjct: 3   FTVAIIGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            + D ++     +T   ++ ADL L + +  +          E+   +    + +  KS+
Sbjct: 63  SSPDSLQGRMWAQTEAAIDEADLSLFVVDAKAGLTPADQTLAEMLRRRGKPVVVVANKSE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              +    YD           IS+  G+G+ +L + I + L  +    P 
Sbjct: 123 ARGSEGGFYDAFTLGLGEPCPISAEHGQGMLDLRDAIVAALGEERAFPPA 172



 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 38/230 (16%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
              D +        A   F   EDV   +           +++      + +        
Sbjct: 154 DLRDAIVAALGEERA---FPPAEDVAETNVDIRPVAGEGTEDE------EVEPAYDETKP 204

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R 
Sbjct: 205 LRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRR 264

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      +  A+ ++++ +     E        +   +    +    K
Sbjct: 265 KAKVQEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLVLREGRAAVLAFNK 324

Query: 329 SDLYSTY------------------TEEYDHLISSFTGEGLEELINKIKS 360
            DL   +                         IS  TG GL+ L+  I  
Sbjct: 325 WDLVENWQALLVDLREKTERLLPQARGIRAVPISGHTGYGLDRLMQAIIE 374


>gi|154487333|ref|ZP_02028740.1| hypothetical protein BIFADO_01183 [Bifidobacterium adolescentis
           L2-32]
 gi|154083851|gb|EDN82896.1| hypothetical protein BIFADO_01183 [Bifidobacterium adolescentis
           L2-32]
          Length = 709

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 81/413 (19%), Positives = 143/413 (34%), Gaps = 76/413 (18%)

Query: 49  SLRYFFGLDGRILDKGLLI-----VF-----------PSPESFTG-EDSAE--------- 82
            +     LD   +D+ L+       F             P+ +   ED +E         
Sbjct: 43  CMHKGIDLDAETIDEQLVTETVGEFFTDGHFDISVDPDDPKVYADDEDISEAIRSSEVSS 102

Query: 83  -FHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA-FENGKIDLLEAES----LADLIS 136
                  I  V  +L    +    R A+   FS  A       D+    +    +  L++
Sbjct: 103 HVSKVSNIIPVRHVLIAAQRAYIAREASVDSFSEGAGIVAEGRDITTVVAPDAEVRILLT 162

Query: 137 SETE-MQRRLSMEGMSG----------ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +  E  Q R S + +SG          +  S    +      + +   +DL+F E  DV 
Sbjct: 163 AREEVRQARRSGQAVSGVGAENVAARDKADSKVTNFTSAAEGVLTVDNSDLNFGETLDVL 222

Query: 186 NFSSKEVLNDIL-----------FLKNDISSHIS-QGKLGEIIRNGYK----IVILGHSN 229
                + + +              L       I      G   +NG K    + ++G  N
Sbjct: 223 VRIVDDAIEEQEYRQYVSNLEGYELDEGDEELIDGTAFSGGESKNGPKPVGVLAVVGRPN 282

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     + +E    
Sbjct: 283 VGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWCGTDFKLVDTGGWEADVEGIESAIA 342

Query: 290 KRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST--YTEEY 339
            +  + V+ AD ++L+ +      ++ + I                K D   +   T E+
Sbjct: 343 SQAQIAVQLADAVILVVDGLVGLTDTDERIVKMLRAAGKPVTLAVNKVDDRESEYLTAEF 402

Query: 340 -------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
                   + IS+  G G+ EL++     L    +   F  PSH R +  + +
Sbjct: 403 WKMGLGEPYGISAMHGRGIGELLDAALDSLKKAERTSGFLTPSHLRRVALVGR 455



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 111/297 (37%), Gaps = 51/297 (17%)

Query: 126 LEAESLADLISSETEMQRRLS------MEGMSG--ELSSLYGQWIDKLTHIRSFIEADLD 177
            + E +   I+S+ ++  +L+      ++G+ G  +      + +       +     +D
Sbjct: 332 ADVEGIESAIASQAQIAVQLADAVILVVDGLVGLTDTDERIVKMLRAAGKPVTLAVNKVD 391

Query: 178 FSEEEDVQNFSSKEVLNDI--------LFLKNDISSHISQGKLGEIIRNGY-------KI 222
             E E +     K  L +           +   + + +   K  E   +G+       ++
Sbjct: 392 DRESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALDSLKKAERT-SGFLTPSHLRRV 450

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKSSL N LA ++  +V D+ GTTRD +   + ++G      DTAGI+    
Sbjct: 451 ALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGIKRRLH 510

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDL 331
                E     RT   +E ++L L+L + +        K            + +  K DL
Sbjct: 511 KLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRCIVLVFNKWDL 570

Query: 332 YSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              +  +                    +S+ TG     L N ++  L++  K++P  
Sbjct: 571 MDEFDRQRMERLWKTEFNRVTWAQRVNLSAKTGWHTNRLANAMRGALASWDKRIPTG 627


>gi|88703668|ref|ZP_01101384.1| GTP-binding protein engA [Congregibacter litoralis KT71]
 gi|88702382|gb|EAQ99485.1| GTP-binding protein engA [Congregibacter litoralis KT71]
          Length = 495

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 32/207 (15%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           QG+       G ++ I+G  N GKS+L N +  ++  +V D PGTTRD + I    EG  
Sbjct: 188 QGEDEAEDHGGTRVAIVGRPNVGKSTLVNRILGEERVVVYDQPGTTRDSVYIKFVREGRP 247

Query: 269 VKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINS---KKEI-----SFP 317
             + DTAG+R   ++    EK  I +T   + +A++++LL +       +++        
Sbjct: 248 YTLIDTAGVRRRKNVREAIEKFSIIKTLSAISDANVVVLLVDGQEGLVDQDLHLLGHCLE 307

Query: 318 KNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSI 361
                +    K D      +E                  H IS+  G G+  L   I + 
Sbjct: 308 AGRALVLAVNKWDGLDPDQKEMIRSELDRRLRFVEFADMHFISALHGSGVGTLFGSIDAA 367

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            +   + +  S     R    L + V 
Sbjct: 368 YAAAMQPMGTS-----RLTRILEEAVA 389



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 13/138 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V ++ G TRD    +   +     + DT G+   +
Sbjct: 5   IALVGRPNVGKSTLFNQLTRSRDALVANLSGLTRDRKYGEGRSDDRAFIVIDTGGVSGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNI--DFIFIGTKSDLYS 333
           + ++    +++ L +E AD++LLL +         ++ + + +    DF  +  K D   
Sbjct: 65  EGIDAAMAEQSLLAIEEADIVLLLVDARDGLNPVDEQLVQYLRQQSRDFHLVVNKID--- 121

Query: 334 TYTEEYDHLISSFTGEGL 351
               + D  +S F   G+
Sbjct: 122 --GRDPDVAVSDFHALGI 137


>gi|322411159|gb|EFY02067.1| GTP-binding protein EngA [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 436

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV ++ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVENVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 66  APFMEQIKNQAQIAMEEADVIVFVVSGKEGVTDADEYVSKILYRTNTPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  +  +    I 
Sbjct: 126 MRNDIYDFYSLGLGDPYPVSSVHGIGTGDILDAIVENLPVEEVEENDDII 175



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 90/210 (42%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   ++ E   +  +  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DILDAIVENLPVEEVEEND-DIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D +G    + DTAG+R++  I    EK  + R    ++ +D++L++  IN+++ 
Sbjct: 213 IDTHFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                              +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWDTIDKDNHTVAQWEADIRDQFQFLAYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L   IK I  ++ K++P ++ +
Sbjct: 331 LTKQRLNKLPELIKRISDSQNKRIPSAVLN 360


>gi|308234454|ref|ZP_07665191.1| small GTP-binding protein [Atopobium vaginae DSM 15829]
 gi|328944301|ref|ZP_08241765.1| ribosome-associated GTPase EngA [Atopobium vaginae DSM 15829]
 gi|327491220|gb|EGF22995.1| ribosome-associated GTPase EngA [Atopobium vaginae DSM 15829]
          Length = 438

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 12/159 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L +DI + +   +     ++    I ++G  N GKSSL N L++   ++V D  GTTRD
Sbjct: 156 DLLDDIVNALPVHEEAPQPKDSSVAIAVIGRPNVGKSSLVNKLSRSQRSLVADYAGTTRD 215

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK-- 311
            + I  D +G  +++ DTAG+R+   +    E   + R    ++ AD+ LL+ + +    
Sbjct: 216 AIDITFDYKGQTIRLVDTAGMRKKTQVHEDVEYYSMVRGLQAMDKADVCLLVIDAHEGMT 275

Query: 312 ------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
                   ++  +    + +  K+DL     +    L S
Sbjct: 276 EQDQKLAGMAIDRGCALVLVLNKTDLLRDEQDRQKLLDS 314



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS+L N LA    AIV +  G TRD      D  G    + DT GI   +
Sbjct: 6   VAIVGRPNVGKSTLVNRLATTKSAIVHESRGVTRDRSYHACDWNGREFTLIDTGGIESLK 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDL 331
           + D       ++  L  + AD+I+++ + +        +  +I    +     +  K D 
Sbjct: 66  SKDRFALGIREQALLGCDEADVIVMVVDGSIGLTDEDETVAQIVRRMHKPVFLVVNKIDN 125

Query: 332 YSTYTEEYDH---------LISSFTGEGLEELINKIKSILS 363
                + +++          IS+  G    +L++ I + L 
Sbjct: 126 PDEVLDSWNYLKLGLGEPRAISATHGTATGDLLDDIVNALP 166


>gi|222149419|ref|YP_002550376.1| GTP-binding protein EngA [Agrobacterium vitis S4]
 gi|254783133|sp|B9JZQ5|DER_AGRVS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|221736402|gb|ACM37365.1| GTP-binding protein [Agrobacterium vitis S4]
          Length = 474

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L      I DTAG+ E
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGEAKLVDLRFHIVDTAGLEE 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
              D +E     +T + ++ ADL L + +          +  ++   +    + +  KS+
Sbjct: 63  AGADTLEGRMRAQTEIAIDEADLSLFVVDAKMGLTHVDKALADMLRKRGKPVVLVANKSE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSIL 362
              +    YD           IS+  G+G+ +L + I   +
Sbjct: 123 ARGSDGGFYDAFTLGLGEPVPISAEHGQGMIDLRDAIVEAI 163



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 89/248 (35%), Gaps = 49/248 (19%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
              D +      I  D  F E++D       +V    + L+  +     +  L       
Sbjct: 154 DLRDAIVEA---IGVDRAFPEDDD-------DVAETDIVLRPTVEGEDDEEDLAYDDTKP 203

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R 
Sbjct: 204 LRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRR 263

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              ++   EK  +  T   +  A+ ++++ +     E        +   +    +    K
Sbjct: 264 KARVIEKLEKLSVADTLRAIRFAETVVIVFDATIPFEKQDIQIVDLVLREGRAAVLAFNK 323

Query: 329 SDLYS------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL                             ++  TG GLE+L+  I          + 
Sbjct: 324 WDLVEDPQAVLAELREKTERLLPQARGIRAVPMAGQTGYGLEKLMQSI----------ID 373

Query: 371 FSIPSHKR 378
             +  +KR
Sbjct: 374 TDMVWNKR 381


>gi|51245541|ref|YP_065425.1| GTP-binding protein Era-like protein [Desulfotalea psychrophila
           LSv54]
 gi|50876578|emb|CAG36418.1| probable GTP-binding protein Era homolog [Desulfotalea psychrophila
           LSv54]
          Length = 313

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 27/203 (13%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           LG+ +++G  + I+G  NAGKS+L N L  + ++IVT  P TTR+ +   ++ + Y + +
Sbjct: 13  LGKDVKSGM-VAIVGPPNAGKSTLMNQLLGQKISIVTSKPQTTRNRILGIVNDDAYQIVL 71

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPK----- 318
            DT G+ + D+ +  E ++     +   D +L L +++        +K+           
Sbjct: 72  LDTPGLHKADEPLNIEMMRVALESLSEVDAVLFLVDVSLPLPPKALAKQREELAGYMEKI 131

Query: 319 NIDFIFIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNK 365
               I +  K DL                +  +    IS+  G+G + L+ +I  ++   
Sbjct: 132 ESPAILVLNKVDLIDKQKLLPMIESYAKLFPFKAVVPISALNGDGADNLLKEILELIPVG 191

Query: 366 FKKLPFSIPSHKRHLYHLSQTVR 388
            +  P  IP+     +  ++ VR
Sbjct: 192 PRYFPEDIPTDATERFLAAEIVR 214


>gi|307700914|ref|ZP_07637939.1| ribosome-associated GTPase EngA [Mobiluncus mulieris FB024-16]
 gi|307613909|gb|EFN93153.1| ribosome-associated GTPase EngA [Mobiluncus mulieris FB024-16]
          Length = 524

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + VA+V D PG TRD +  D D  G    + DT G     
Sbjct: 91  VAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVGV 150

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             ++K    +  + +E AD+ L + + N        +   +        I +  K D   
Sbjct: 151 KGLDKAVATQAEIAIEMADVSLFVVDANVGATATDEAMMRLLRASKKPVILVANKVDSER 210

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
              +               S+  G G+ EL++ +   L 
Sbjct: 211 AEADASGLWNLGLGEPYPISALHGRGVGELLDVLLDALP 249



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 95/261 (36%), Gaps = 30/261 (11%)

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
               +M  +            +K+   R+  +A   ++         S      +  L +
Sbjct: 183 ATDEAMMRLLRASKKPVILVANKVDSERAEADASGLWNLGLGEPYPISALHGRGVGELLD 242

Query: 202 DISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
            +   +       + R   +  ++ ++G  N GKSSL N+LA    ++V+D PGTTRD +
Sbjct: 243 VLLDALPTVAAHRVERPADSTPRVALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPV 302

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE-- 313
              L+L+G      DTAGI+         +   + R    +E+A++ L+L +        
Sbjct: 303 DEVLELDGKEWVFVDTAGIKRRIKQTVGADYYSVLRAQSAIESAEVALVLLDGGEPLSEQ 362

Query: 314 ------ISFPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGEGL 351
                 +        + +  K DL   Y ++                    I++ TG   
Sbjct: 363 DVKVVNLVVESGRALVLVNNKWDLVDEYRQQELKREQELDLAHVSWAPKINIAAKTGWHT 422

Query: 352 EELINKIKSILSNKFKKLPFS 372
             ++  +++ L     ++  S
Sbjct: 423 NRIVRALEAALEGWTTRISTS 443


>gi|93005486|ref|YP_579923.1| GTP-binding protein EngA [Psychrobacter cryohalolentis K5]
 gi|122415786|sp|Q1QD14|DER_PSYCK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|92393164|gb|ABE74439.1| Small GTP-binding protein domain [Psychrobacter cryohalolentis K5]
          Length = 480

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 27/172 (15%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G K+ I+G  N GKS+L N L  +D  +V D+PGTTRD + I    EG    + DTAG+R
Sbjct: 177 GLKLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIYIPYTREGKDYVLIDTAGVR 236

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGT 327
              + D+ VEK  + +T   +E++++ +++ + +     +++     +       +    
Sbjct: 237 RRGKIDEKVEKFSVIKTLQAIEDSNVTVIVIDAHEGIVDQDLHMIGYALDAGRALVVAIN 296

Query: 328 KSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILS 363
           K D  +   + Y                 H IS+  G G+  L   I     
Sbjct: 297 KWDGLTADQKNYIKIEMDRRFNFIPYVKVHQISALHGTGVGNLYPSILRAYQ 348



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 19/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN   K   A+V D+ G TRD    D   E     + DT GI E D
Sbjct: 7   VALIGRPNVGKSTLFNQFTKSRQALVADLSGLTRDRQYGDATYEDKAFIVVDTGGIGEAD 66

Query: 282 DIV---EKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSD 330
           D     +    ++++  +  AD+I+ + +     I +  EI             +  K D
Sbjct: 67  DGRGDIDDYMSEQSYTAIHEADIIVFVVDARAGMIGADAEIGKFLHTLGKPVYVVANKVD 126

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            ++ +   E+        + +++  G G+  L+  + + + ++   + 
Sbjct: 127 GVHDSAPAEFYALGLGEPYPMAASHGRGVGNLLEVLTADMPSQENVVE 174


>gi|148255174|ref|YP_001239759.1| GTP-binding protein EngA [Bradyrhizobium sp. BTAi1]
 gi|166224309|sp|A5EI59|DER_BRASB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|146407347|gb|ABQ35853.1| GTP-binding protein, essential for cell growth [Bradyrhizobium sp.
           BTAi1]
          Length = 456

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 121/321 (37%), Gaps = 43/321 (13%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE---TEMQRRLS-------- 146
            +     L     G  + R  E  +  +  A++L  +I +    T   R  +        
Sbjct: 53  TIIDTAGLDGGPKGSLTARMQEQTETAIALADALFFVIDARAGLTPADRTFADFARRADK 112

Query: 147 -MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS 205
            +  ++ +    +G+     ++     +     +E  +        +   +   ++++  
Sbjct: 113 PVLLLANKSEGKHGELGAMESYALGLGDPIQISAEHGEGMGELYDALRGLVPETEDEVDE 172

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           H    +  E      ++ I+G  NAGKS+L N L  ++  + +   GTTRD + ++++ +
Sbjct: 173 HEETDE--ERAARPIRVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTRDSIAVEIEYK 230

Query: 266 GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322
           G   +I DTAG+R    I    EK  +      V  A++++L+ +  ++ E    +  D 
Sbjct: 231 GRGFRIFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRFEEQDLRIADL 290

Query: 323 I--------FIGTKSDL-------YSTYTEEYDHL-----------ISSFTGEGLEELIN 356
           I            K DL        S    + DH            +S   GEG++ L+ 
Sbjct: 291 IEREGRALVIAVNKWDLMESKPGQISALRHDVDHWLPQVSGVPIVAVSGLMGEGIDRLMQ 350

Query: 357 KIKSILSNKFKKLPFSIPSHK 377
            I    +   +++P +  +  
Sbjct: 351 AIVESYAVWNRRVPTAALNRW 371



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 18/170 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I I+G  N GKS+LFN L  + +A+V D+PG TRD    +  L      I DTAG+  
Sbjct: 3   FTIAIIGRPNVGKSTLFNRLVGQKLALVDDMPGVTRDRREGEAKLGDLQFTIIDTAGLDG 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                      ++T   +  AD +  + +  +          + +   +   + +  KS+
Sbjct: 63  GPKGSLTARMQEQTETAIALADALFFVIDARAGLTPADRTFADFARRADKPVLLLANKSE 122

Query: 331 ---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                                IS+  GEG+ EL + ++ ++     ++  
Sbjct: 123 GKHGELGAMESYALGLGDPIQISAEHGEGMGELYDALRGLVPETEDEVDE 172


>gi|332527857|ref|ZP_08403894.1| GTP-binding protein Der [Rubrivivax benzoatilyticus JA2]
 gi|332112434|gb|EGJ12227.1| GTP-binding protein Der [Rubrivivax benzoatilyticus JA2]
          Length = 447

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 96/262 (36%), Gaps = 27/262 (10%)

Query: 99  LAKMPNLRLANPGEFSRRAFENGKIDLLEAESL---ADLISSETEMQRRLSMEGMSGELS 155
           +          P        +  +  + EA+ +   ADL +  +     ++   +  +  
Sbjct: 54  VVDTGGFEPEKPSGVVAEMAKQTRQAVAEADVVVFVADLRAGVSAQDHDIA-RFLRTQQK 112

Query: 156 SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
            +            +      +F E    +        +    +++ + + +     G+ 
Sbjct: 113 KVILAVNK--AEGMAESPLLAEFHELGIGEP--HPLSASHGQGVRSLLEAALEDFDFGDE 168

Query: 216 IRNG--------YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              G         ++ + G  N GKS+L NA   ++  +  D PGTTRD + + L+ EG 
Sbjct: 169 DEEGAEPDADAPIRLAVAGRPNVGKSTLINAWLGEERLVAFDQPGTTRDAIKVSLEREGR 228

Query: 268 LVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SF 316
             ++ DTAG+R      + +EK  + +T   + +A++++L+ +     S+++        
Sbjct: 229 RFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIADANVVVLMVDATVGVSEQDAHIAGYVL 288

Query: 317 PKNIDFIFIGTKSDLYSTYTEE 338
                 +    K D    Y  +
Sbjct: 289 ESGRAVVLALNKWDATDEYQRQ 310



 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN + K   AIV D  G TRD    D  L G    + DT G   E 
Sbjct: 5   IALVGRPNVGKSTLFNRITKSRDAIVADFAGLTRDRHYGDARLGGREFIVVDTGGFEPEK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD-- 330
              V  E  K+T   V  AD+++ + ++ +       +I+     +    I    K++  
Sbjct: 65  PSGVVAEMAKQTRQAVAEADVVVFVADLRAGVSAQDHDIARFLRTQQKKVILAVNKAEGM 124

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             S    E+        H +S+  G+G+  L+           +    +
Sbjct: 125 AESPLLAEFHELGIGEPHPLSASHGQGVRSLLEAALEDFDFGDEDEEGA 173


>gi|153815591|ref|ZP_01968259.1| hypothetical protein RUMTOR_01827 [Ruminococcus torques ATCC 27756]
 gi|145847022|gb|EDK23940.1| hypothetical protein RUMTOR_01827 [Ruminococcus torques ATCC 27756]
          Length = 298

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 88/216 (40%), Gaps = 22/216 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   +   D
Sbjct: 3   EDFKSGF-VTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVD 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFI 325
           T GI +  + + +  +      +   D++L L E         +  I   K      I +
Sbjct: 62  TPGIHKAKNKLGEYMVNIAERSLNEVDVVLWLVEPSAFIGAGDRHIIEQLKKVKTPVILV 121

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D             Y +EYD      +S+ +G+  +ELI  I   L    +     
Sbjct: 122 INKIDMVKKEEILTFIDAYRKEYDFAEIVPVSARSGDNTDELIKVILKYLPYGPQFYDED 181

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
             + +     +++ +R   +  LNE+      +A +
Sbjct: 182 TVTDQPERQIVAELIREKALHCLNEEIPHGIAVAID 217


>gi|317502138|ref|ZP_07960316.1| GTP-binding protein Era [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331090350|ref|ZP_08339233.1| GTP-binding protein Era [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316896455|gb|EFV18548.1| GTP-binding protein Era [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330401305|gb|EGG80893.1| GTP-binding protein Era [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 298

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 22/216 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   +   D
Sbjct: 3   EDFKSGF-VTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVD 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFI 325
           T GI +  + + +  +      +   D++L L E         +  I   K      + +
Sbjct: 62  TPGIHKAKNKLGEYMVNIAERSLNEVDVVLWLVEPSAFIGAGDRHIIEQLKKVKTPVVLV 121

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D             Y +EYD      +S+ +G+  +ELI  I   L    +     
Sbjct: 122 INKIDMVKKEEILTFIDAYRKEYDFAEIVPVSARSGDNTDELIKVILKYLPYGPQFYDED 181

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
             + +     +++ +R   +  LNE+      +A +
Sbjct: 182 TVTDQPERQIVAELIREKALHCLNEEIPHGIAVAID 217


>gi|223937585|ref|ZP_03629488.1| small GTP-binding protein [bacterium Ellin514]
 gi|223893748|gb|EEF60206.1| small GTP-binding protein [bacterium Ellin514]
          Length = 519

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 30/214 (14%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-- 266
           +GK    ++   K+ I+G  N GKSS+ NAL + +  IV+ IPGTTRD + +  ++E   
Sbjct: 190 EGKTKSELKGPLKLAIVGRPNVGKSSIINALTQSERVIVSPIPGTTRDAVDVPFEVEADG 249

Query: 267 --YLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KE 313
                 + DTAG+R++   DD VE   +KRT   +  AD+ +L+ +  +          +
Sbjct: 250 IRQSYLLIDTAGLRKSRRVDDSVEFYSVKRTEDSIARADICVLVLDAEAGITEQDKKVAD 309

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS----SFTGEGLEELINKI----------- 358
               +    I +  K DL      E          + T +  E  + ++           
Sbjct: 310 KIVEERRACIVVVNKWDLVEESVRESREQEIERRDAKTRDRDERKVRRLTTLGEFGQWVQ 369

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
           + +    +  + F+      HL  L + VRY+  
Sbjct: 370 EHLFFLDYAPVIFTSAKSGFHLDRLLEAVRYVAD 403



 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 22/164 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           I I+G  N GKS+LFN +A + +AIV D+PG TRD ++ +++  G+   + DT GI    
Sbjct: 5   IAIVGRPNVGKSALFNRIAGRRIAIVHDMPGVTRDRVSAEVEWGGHAFTLVDTGGIGLLR 64

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILL-------LKEINSKKEISFPK-NIDFIFIGTK 328
             +  D++ K  +++  L +E A +I+L       +  ++ +      +     +    K
Sbjct: 65  REKAADVITKAALEQVDLAIEAAHVIILAANVQEGIVPLDQEVADKLRRSGKPVLVAANK 124

Query: 329 SDL---------YSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
            D          ++    +    +S+  GEG+ +L+N   ++L 
Sbjct: 125 VDTQKVEAAALEFTELGFDKVFPVSAIHGEGIVDLMNAATALLP 168


>gi|291460309|ref|ZP_06599699.1| ribosome-associated GTPase EngA [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291417064|gb|EFE90783.1| ribosome-associated GTPase EngA [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 441

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 15/161 (9%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
            H  +G   E   +  ++ ++G  N GKSS+ N L  ++  IV++I GTTRD +  ++  
Sbjct: 163 KHFPKGLEEEAEDDRIRVALIGKPNVGKSSMINKLLGENRVIVSEIAGTTRDAIDTEIVH 222

Query: 265 EGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--------KE 313
           +G      DTAG+R      D +E+  + RT   V+ AD+ ++L +              
Sbjct: 223 DGERYIFIDTAGLRRKGRVTDEIERYSVIRTVSAVDRADICVVLIDAIEGITEQDVHIAG 282

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           I+       I    K D      E+ D  +  FT +  E+L
Sbjct: 283 IAHESGKGVIIAVNKWDAV----EKDDRTMRDFTKKLREKL 319



 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 9/127 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN +A K ++IV D PG TRD +  D +   +   + DT GI  ++
Sbjct: 6   VAVVGRPNVGKSTLFNVIAGKQISIVKDTPGVTRDRIYADCEWLNHPFTLVDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D++  +   +  L +E AD+IL + ++ S          E+    +   +    K D +
Sbjct: 66  RDVLLSQMRSQAELAIETADVILFVVDVRSGVTDADYAVAELLRKSHKPIVLCVNKVDSF 125

Query: 333 STYTEEY 339
                E 
Sbjct: 126 QKLGNEI 132


>gi|317051076|ref|YP_004112192.1| ribosome-associated GTPase EngA [Desulfurispirillum indicum S5]
 gi|316946160|gb|ADU65636.1| ribosome-associated GTPase EngA [Desulfurispirillum indicum S5]
          Length = 457

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 115/321 (35%), Gaps = 41/321 (12%)

Query: 99  LAKMPNLRLANPGEFSRRAFENGKIDLLEAE-SLADLISSETEMQRRLSME-----GMSG 152
           + +   +  A           +G+   +  + ++ D++    E    +++          
Sbjct: 75  MVEQTGIAAAEADRVIF--LLDGQTGPIADDFAIMDMLR-RHEKPVYIAVNKIDAPSHEK 131

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212
            L   Y   +D++  + +     +D   +   + F+S    +    +  D          
Sbjct: 132 ILLDFYQLGVDEVFPVSAAHGRGVDDLLDTVTEGFASTAHQDSPEEIDED---------- 181

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
                   K+ I+G  N GKSSL N +  ++  + +++PGTTRD +   +  EG    + 
Sbjct: 182 ----SIPIKVAIVGRPNVGKSSLVNKICGENRVVASEVPGTTRDTIHTPVRREGRDFILL 237

Query: 273 DTAGIRETDDIV----EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNI 320
           DTAGIR          E+  + R+   +E A +++L+ +               ++    
Sbjct: 238 DTAGIRRKSKAYSENLERYSVFRSITAIEEAHVVILMLDATEGITDQDLKVASYAWEAGK 297

Query: 321 DFIFIGTKSDLYSTYT------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             I    K DL +  T      E+       F+ + +   I+ +      K   L  S+ 
Sbjct: 298 PIIIAVNKWDLVAKETMTYREFEKDIEHRFKFSTKPIILFISALSGQRVVKLFDLARSLY 357

Query: 375 SHKRHLYHLSQTVRYLEMASL 395
              R   + ++    ++ A+ 
Sbjct: 358 EKTRFRVNTNELNELIQSATA 378



 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 19/158 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +AKK +AIV DIPG TRD    D++ E     I DT G     
Sbjct: 7   VCIIGRPNVGKSTLFNRIAKKRIAIVEDIPGVTRDRNYHDVEWEDKEFTIVDTGGFESET 66

Query: 282 DIV--EKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDL 331
                E   +++T +    AD ++ L +  +          ++             K D 
Sbjct: 67  GKGSLEASMVEQTGIAAAEADRVIFLLDGQTGPIADDFAIMDMLRRHEKPVYIAVNKIDA 126

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKS 360
            S      D            S+  G G+++L++ +  
Sbjct: 127 PSHEKILLDFYQLGVDEVFPVSAAHGRGVDDLLDTVTE 164


>gi|116749242|ref|YP_845929.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB]
 gi|189037168|sp|A0LJ92|DER_SYNFM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|116698306|gb|ABK17494.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB]
          Length = 446

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 102/294 (34%), Gaps = 54/294 (18%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           LADL+   +      ++  + G                     A   F    D     S 
Sbjct: 102 LADLLR-RSSKPVFYAVNKIDGSEQRR---------------HAAEFFELGLDRIYPISA 145

Query: 191 EVLNDILFLKNDISSHISQG--KLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAI 246
                I  L +D+ + I +   +  E   +G   ++ ILG  N GKS+L N L      I
Sbjct: 146 AHGFGISELMDDLCAAIPEAPAQTAEEEESGGAIRVSILGRPNVGKSTLVNHLLGAPRVI 205

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           V+ +PGTTRD +   +   G    + DTAGIR         EK  I +    VE + +++
Sbjct: 206 VSPVPGTTRDAVDSHIVKAGQEYVLIDTAGIRRKGRTREKLEKISIIKALQSVERSHVVV 265

Query: 304 LLKEI-----NSKKEIS--FPKNIDFIFIG-TKSDLYSTYTEEYDHLI------------ 343
           LL +      +    I+    +      +G  K D      +     +            
Sbjct: 266 LLLDAVEGVTDQDLHIAGYIKERSRACIVGINKWDAADKDPKRTKRFMDDLHDRFRFLTY 325

Query: 344 ------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                 S+ TG  +  L+  +K +     +++   I +       L +T+   E
Sbjct: 326 APVLTFSALTGRNVARLLPTVKEVFRQYNQRVTTGIVNR-----ALEETLARHE 374



 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN ++K + A+V D+PG TRD     +        I DTAG + + 
Sbjct: 4   VAIVGRPNVGKSTLFNRISKDNSALVDDLPGVTRDRNYARVSWNDKPFVIIDTAGFVGQD 63

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
               E+   ++  L ++ AD++L + +  +          ++    +    +   K D  
Sbjct: 64  TSAFEELTREQILLALDEADILLFVADAKTGLHPGDAELADLLRRSSKPVFYAVNKIDGS 123

Query: 333 S---------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                         +  + IS+  G G+ EL++ + + +     + 
Sbjct: 124 EQRRHAAEFFELGLDRIYPISAAHGFGISELMDDLCAAIPEAPAQT 169


>gi|297181616|gb|ADI17800.1| predicted GTPases [uncultured Sphingobacteriales bacterium
           HF0130_33B19]
          Length = 434

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS++FN   +   AI  ++ G TRD      +  G    + DT G I+ +
Sbjct: 5   VAIVGRPNVGKSTIFNRFTESRQAITDEVSGVTRDRHYGKAEWNGREFSVIDTGGYIKGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DD+ E E  K+  L +E A++IL L ++ +          ++    N   +    K D  
Sbjct: 65  DDVFEVEIRKQVELAIEEANVILFLVDVKAGITDLDQEVVKLLRRSNKKVVLAVNKVDNS 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               +  +            +S +G G  EL++++        K     IP
Sbjct: 125 KLLDDAVEFYNLGLGDYFPIASISGSGTGELLDELLRHFEEDIKMQEDDIP 175



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 12/163 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H  +  +     +  K  I+G  N GKSS+ N L  K+  IVTDI GTTRD 
Sbjct: 154 ELLDELLRHFEE-DIKMQEDDIPKFAIIGRPNVGKSSIINTLIGKEQNIVTDIAGTTRDS 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           L I     G+   + DTAG+R+  ++    E   + R+   +E++D+ + + +     E 
Sbjct: 213 LNIRYTQFGFDFSLVDTAGVRKKKNVHENLEFYSVMRSIRAIEHSDVCIHIIDAERGFEA 272

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
                  I+       + +  K DL     E    +      +
Sbjct: 273 QDQRIFHIADRNKKGIVILVNKWDLVDKSHETAKKMEEQIKKK 315


>gi|150026003|ref|YP_001296829.1| GTP-binding protein EngA [Flavobacterium psychrophilum JIP02/86]
 gi|166198714|sp|A6H103|DER_FLAPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|149772544|emb|CAL44027.1| GTP-binding protein EngA [Flavobacterium psychrophilum JIP02/86]
          Length = 436

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++  AIV  + G TRD      +  G    + DT G IR +
Sbjct: 5   VAIVGRPNVGKSTLFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYIRGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
           DDI E E  K+  L ++ +D+I+ + ++        ++  ++        +    K D  
Sbjct: 65  DDIFEGEIRKQVELAIDESDVIIFVVDVEEGITPMDDAVAKMLRKVTKPVLLAVNKVDNA 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               +  +            +S +G G  +L++ +      K       I 
Sbjct: 125 MREKDAVEFYNLGLGEYYTFASISGSGTGDLLDALIDAFPIKPLPTQEEIV 175



 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 11/127 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  ++G  NAGKSS  NAL  K+  +VTDI GTTRD +    D  G+   + DTAGIR  
Sbjct: 178 RFAVVGRPNAGKSSFINALIGKERFMVTDIAGTTRDSIDTKYDRFGFEFNLVDTAGIRRK 237

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKS 329
             +    E   + R+   +E+AD+ +L+ +     E        ++       + +  K 
Sbjct: 238 AKVKEDLEFYSVMRSVRAIEHADVCILIIDATRGFEGQDQSIFWLAEKNRKGVVILVNKW 297

Query: 330 DLYSTYT 336
           DL    T
Sbjct: 298 DLVEKDT 304


>gi|260072547|gb|ACX30447.1| Era/TrmE family GTP-binding protein [uncultured SUP05 cluster
           bacterium]
 gi|269468505|gb|EEZ80163.1| GTPase [uncultured SUP05 cluster bacterium]
          Length = 469

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 92/254 (36%), Gaps = 34/254 (13%)

Query: 153 ELSSLYGQWIDKLT------HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           E++S   +    +              A   +          S E    I  L +     
Sbjct: 105 EIASQLRRLKKDIILVCNKAEGLDESLAAEFYELGLGEPRLISAEHSQGIGDLIDHTLPL 164

Query: 207 ISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           + Q  + E     G  + +LG  N GKS+L N +  ++  +  D+PGTTRD + I  + E
Sbjct: 165 LPQATIEEEAEVEGIAVAVLGRPNVGKSTLINRILGEERVLAIDMPGTTRDSIYIPFERE 224

Query: 266 GYLVKISDTAGIRETDDIVEKE---GIKRTFLEVENADLILLLKEIN---SKKEISFP-- 317
           G    + DTAGIR      EK     I +    ++ + +++L+ +     ++++ +    
Sbjct: 225 GQKYTLIDTAGIRRKRSTHEKIEIFSIIKAIDALDRSHVVILVLDAREGVTEQDATLLGM 284

Query: 318 ---KNIDFIFIGTKSDLYSTYTE----------------EYDHLISSFTGEGLEELINKI 358
              K    + +  K D    Y +                   H IS+  G G+ +L   I
Sbjct: 285 IADKGRALLIVINKWDGLDDYQKSEVKRKLDVKLSFVNYASVHYISALHGSGVGKLFAPI 344

Query: 359 KSILSNKFKKLPFS 372
               +N   +   S
Sbjct: 345 IKSYTNASTQHSTS 358



 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 21/172 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG---YLVKISDTAGIR 278
           I ++G  N GKS+LFN L+    A+V+D  G TRD    ++ L+      V I DT G+ 
Sbjct: 6   ISLVGRPNVGKSTLFNRLSNSRQALVSDFEGLTRDRQYAEILLDDDSQTFVTIIDTGGLT 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIGTKS 329
             D+IV+     +    +E +D+I  +          ++    ++   K  D I +  K+
Sbjct: 66  GDDNIVDSGIQGQVLNALEESDVIYFIVSARDGVIGLDLEIASQLRRLKK-DIILVCNKA 124

Query: 330 D-LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           + L  +   E+         LIS+   +G+ +LI+    +L     +    +
Sbjct: 125 EGLDESLAAEFYELGLGEPRLISAEHSQGIGDLIDHTLPLLPQATIEEEAEV 176


>gi|197104999|ref|YP_002130376.1| GTP-binding protein [Phenylobacterium zucineum HLK1]
 gi|196478419|gb|ACG77947.1| GTP-binding protein [Phenylobacterium zucineum HLK1]
          Length = 509

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 18/160 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+LFN LA + +AIV D PG TRD       L    +++ DTAG  +
Sbjct: 3   LKLAIVGRPNVGKSTLFNRLAGRKLAIVDDRPGVTRDRRFGTGRLGDLDLELIDTAGFED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ +E     +T   V+  D+ L + +             EI   ++   I    K++
Sbjct: 63  VTDESLEARMRAQTERAVDECDVALFVIDSREGVTPADRIFAEILRKRDKPVILAANKAE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSI 361
                    D           IS+  GEG+ +L   + ++
Sbjct: 123 GRQGEAGILDAWGLGLGEPVPISAEHGEGMADLYAALAAV 162



 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 11/126 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I I+G  NAGKS+L N L  +D  +     G TRD + +D + EG  +++ DTAG+R 
Sbjct: 180 VRIAIVGRPNAGKSTLVNRLIGEDRLLTGPEAGITRDAIPVDWEWEGRPIRLVDTAGLRR 239

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--------FIGTK 328
              +    EK   + T   +  A+++LL+ +     EI   +  D          F+ TK
Sbjct: 240 KAKVQEKLEKLSTQDTIRAITFAEVVLLVMDATHPFEIQDLQIADLCEREGRGLVFVLTK 299

Query: 329 SDLYST 334
            DL   
Sbjct: 300 WDLVEE 305


>gi|328957352|ref|YP_004374738.1| GTP-binding protein EngA [Carnobacterium sp. 17-4]
 gi|328673676|gb|AEB29722.1| GTP-binding protein EngA [Carnobacterium sp. 17-4]
          Length = 437

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 20/172 (11%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +   SH  + +  E   +  K  ++G  N GKSSL NA+  +D  IV+ I GTTRD 
Sbjct: 154 DLLDAAISHFPEEQEEEYDDSVIKFSLIGRPNVGKSSLVNAILGEDRVIVSSIAGTTRDA 213

Query: 258 LTIDLD-LEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +       +G    + DTAG+R+   +    E+  + R    +E +D++L +  +N+++ 
Sbjct: 214 IDTAFVGEDGTEFVMIDTAGMRKKGKVYENTERYSVLRALRAIERSDVVLCV--LNAEEG 271

Query: 314 I----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           I          +       I +  K D      E+ +H + +F  +   E +
Sbjct: 272 IREQDKKVAGYAHEAGKGIIIVVNKWD----TLEKDNHTMKAFEEQIRSEFL 319



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 73/171 (42%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + ++IV D+ G TRD +    +  G    + DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERISIVEDVSGVTRDRIYAPAEWLGKEFNVIDTGGIDLGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYS 333
           +   ++   +  + ++ AD+I+ +  +         +  +I +  N   +    K D   
Sbjct: 66  EPFLEQIKYQAEIAMDEADVIIFITSVKEHITDADENVAKILYRTNKPVLLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELIN-KIKSILSNKFKKLPFSIP 374
              + +D           IS   G G+ +L++  I      + ++   S+ 
Sbjct: 126 MRNDIFDFYSLGLGEPFPISGSHGLGIGDLLDAAISHFPEEQEEEYDDSVI 176


>gi|325475284|gb|EGC78469.1| GTP-binding protein EngA [Treponema denticola F0402]
          Length = 476

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 30/213 (14%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVT 248
            E  ++I  L  ++++ +   K+ E+  +   +I I+G  N GKS+L N L     +I++
Sbjct: 178 AEHGDNISELAEELTAGLDFSKVEELEEDDTIRITIVGKPNTGKSTLANYLTGSSASIIS 237

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLL 305
           ++ GTTRD++  +   +     I DTAGIR    +    E   + R    ++NAD++  L
Sbjct: 238 NVAGTTRDIVEGEFSYKNKKFLIQDTAGIRRKAKVNEDIEYYSVVRAIKSMDNADIVFHL 297

Query: 306 KEI------NSKKEISFPKNI--DFIFIGTKSDLYSTYTEEY------------------ 339
            ++        KK I    N     IF+  K DL     + +                  
Sbjct: 298 IDVQEGLTEQDKKIIVQATNRGLGVIFVLNKWDLMEQTKKAFKDEEERIKVMFGKMDYAP 357

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              IS+  G G++EL+N    +     KK+  S
Sbjct: 358 VLAISANEGTGIKELLNTAVKMFEQLNKKIETS 390



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 22/175 (12%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           S+    +  +N   I I+G  N GKS+LFN   +K  +I    PG TRD +     + G 
Sbjct: 19  SEFSHQKKYKNIPLIAIVGRPNVGKSTLFNRFLRKRRSITDPTPGVTRDPVEAQAIVNGL 78

Query: 268 LVKISDTAGIRET------DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISF 316
            V + DT G + T      +D +++  +++T   ++ AD ILLL +        ++ I F
Sbjct: 79  PVMLVDTGGFKLTRSGDAFEDTIDELVMEKTISTLKKADRILLLLDAGLATAEDEEFIQF 138

Query: 317 PKNIDFIFI--GTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKS 360
            +      +    K++      E Y++          IS+  G+ + EL  ++ +
Sbjct: 139 LRPYFNKLVVAVNKTEGGRLMAEAYNYYSYGFKSLTCISAEHGDNISELAEELTA 193


>gi|325662229|ref|ZP_08150844.1| GTP-binding protein Era [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331086022|ref|ZP_08335105.1| GTP-binding protein Era [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325471481|gb|EGC74702.1| GTP-binding protein Era [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330406945|gb|EGG86450.1| GTP-binding protein Era [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 298

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 87/214 (40%), Gaps = 22/214 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   +   DT 
Sbjct: 5   YRSGF-VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGT 327
           GI +  + + +  +      +   D++L L E ++          E         I +  
Sbjct: 64  GIHKAKNKLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGERHIAEQLKKVKTPVILVIN 123

Query: 328 KSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K+D             Y   YD      +S+ +GE  +ELI  I   L    +       
Sbjct: 124 KTDKVKKEEVFTFIDAYKNIYDFAAIVPVSARSGENTDELIRVIMQHLPYGPQFYDEDTI 183

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           + +     +++ +R   + SLNE+      +A +
Sbjct: 184 TDQPQRQIVAEIIREKALHSLNEEIPHGIAVAID 217


>gi|167646460|ref|YP_001684123.1| GTP-binding protein EngA [Caulobacter sp. K31]
 gi|167348890|gb|ABZ71625.1| small GTP-binding protein [Caulobacter sp. K31]
          Length = 602

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 18/172 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+LFN LA + +A+V D PG TRD       L    +++ DTAG  +
Sbjct: 3   LKLAIVGRPNVGKSTLFNRLAGRKLALVDDQPGVTRDRRFAHGRLGDLDLELIDTAGFED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ +E     +T L ++ AD+ LL+ +             EI   +N   +    KS+
Sbjct: 63  VTDESLEARMRAQTELAIDEADVSLLVFDAREGLTPLDKTFAEILRKRNKPVLVAANKSE 122

Query: 331 LYS---------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
             +         +        IS   GEG+ EL   + +I   + +     +
Sbjct: 123 GKAGDHGAAEANSLGLGEPIQISGEHGEGMAELYAALIAIAPEELQGEHDEL 174



 Score = 96.5 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 15/158 (9%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNG----YKIVILGHSNAGKSSLFNALAKKDVAI 246
           E    +  L   + +   +   GE    G     KI I+G  NAGKS+L N L  +   +
Sbjct: 147 EHGEGMAELYAALIAIAPEELQGEHDELGDDKPIKIAIVGRPNAGKSTLINRLIGEQRLL 206

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
                G TRD +++D D  G  V++ DTAG+R+   +    EK     T   +  A+++L
Sbjct: 207 TGPEAGITRDSISVDWDWGGRKVRLVDTAGLRKKAKVNEKLEKLSTGDTIRSITFAEVVL 266

Query: 304 LLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
           L+ +     E        ++  +    +F+  K DL  
Sbjct: 267 LIMDATHPFETQDLQIADLAEREGRCVVFVLAKWDLVE 304


>gi|300814694|ref|ZP_07094944.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511167|gb|EFK38417.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 439

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 30/217 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++++  I +  + +   +  ++ I+G  N GKSSLFN L+K++ +IVT+I GTTRD 
Sbjct: 155 DLLDEVTKSIDKY-VADNEDDFIRVSIIGKPNVGKSSLFNYLSKEERSIVTNIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +  +       DTAG+R+   I    E+  + RT   +E + + LLL +       
Sbjct: 214 IDTKISYKDNEYIFVDTAGLRKRKKIKESVERYSVIRTLTAIERSSVCLLLVDATEGISE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +   N   I    K D                       +      IS+  G
Sbjct: 274 QDSKIAGFAHDNNKAMIICVNKWDAIEKDTYTMKNFEADVRRELPFLSYAPIIFISAMKG 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             +EEL+  I+ + +N   ++   + +   +   L+ 
Sbjct: 334 TRVEELLGLIELVDNNYNHRIQTGVLNDILNRSVLNN 370



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  K ++I  D PG TRD +        Y   + DT G+   D
Sbjct: 6   VSIIGKPNVGKSTLFNKILGKKISITEDTPGVTRDRIYQTASWLDYSFLLVDTGGLDLKD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           + +    IK +  + VE + +I+ L +       + +EI+      N   I    K D  
Sbjct: 66  EDIFMSSIKAQVDIAVETSQVIIFLTDGIEGVSPTDREIANYLRKSNKKVILAVNKCDAK 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            T    YD            SS  G GL +L++++   +            
Sbjct: 126 KTKENIYDFFELGLGEPYLVSSEQGTGLGDLLDEVTKSIDKYVADNEDDFI 176


>gi|237745515|ref|ZP_04575995.1| GTP-binding protein engA [Oxalobacter formigenes HOxBLS]
 gi|229376866|gb|EEO26957.1| GTP-binding protein engA [Oxalobacter formigenes HOxBLS]
          Length = 445

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 77/200 (38%), Gaps = 32/200 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +   ++ ++G  N GKS++ NAL  ++  I  D+PGTTRD + I  + +G    + DTAG
Sbjct: 178 QRPVRLAVVGRPNVGKSTMINALLGEERVIAFDLPGTTRDAIEIPFERDGKHYTLVDTAG 237

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           +R+   +    EK  + +T   +  A+++LLL +                       +  
Sbjct: 238 LRKRGKVFQAIEKFSVVKTLQAISEANVVLLLLDAQQDISEQDAHIAGFVLESGRALVVG 297

Query: 326 GTKSD-LYSTYTEEYD---------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D L      E                 H +S+    G+  L+  + +  +    KL
Sbjct: 298 INKWDGLPPDKRREVKAEVERKLHFLSFAKFHYVSALKATGIGALMRSVDAAYAAAMAKL 357

Query: 370 PFSIPSHKRHLYHLSQTVRY 389
                   R    L + V +
Sbjct: 358 STP-----RLTRVLEEAVEH 372



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 23/216 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRAALVADYPGLTRDRHYGEGRMGDRPFLVIDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNI--DFIFIGTKSDLY 332
            + V +E  K+T   V  +D+++ + +         K    + +      I +  K++  
Sbjct: 65  KEGVLQEMAKQTKQAVAESDVVVFMVDGRQGITPHDKAITDYLRKCGRPVILVVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                  D           ISS  G+G+  L+ +    +     +    I   +R +   
Sbjct: 125 KYTAVVADFYELGLGDPLVISSAHGDGVHTLLEEALGKVPYAPAETEDGIAGEQRPVRLA 184

Query: 384 SQTVRYLEMASLNEKDCGLD-IIAENL----RLASV 414
                 +  +++     G + +IA +L    R A  
Sbjct: 185 VVGRPNVGKSTMINALLGEERVIAFDLPGTTRDAIE 220


>gi|145351972|ref|XP_001420333.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580567|gb|ABO98626.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 555

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 16/146 (10%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE- 265
           +S+ +  E       + I+G  N GKSSL N LA +  +IV+D  GTTRD +   ++ + 
Sbjct: 270 VSEDENAEEEDIPVTVAIIGRPNVGKSSLLNGLAGEARSIVSDFSGTTRDSIDTLVEDKY 329

Query: 266 -GYLVKISDTAGIRET------DDIVEKEGIKRTFLEVENADLILLLKEINSKK------ 312
            G    + DTAGIR         D  EK  + R    ++ AD+++L+ +           
Sbjct: 330 TGRKFTLIDTAGIRRRTQVKSGTDGAEKLSVGRALQAMKRADVVVLVIDGTEGPSQQDFV 389

Query: 313 --EISFPKNIDFIFIGTKSDLYSTYT 336
             E +  +    +    K DL    T
Sbjct: 390 LAERATQEGCAIVLCINKWDLVDKDT 415



 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 61/192 (31%), Gaps = 35/192 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKS+LFN L     AIV D PG TRD + +      +   + DT G+   
Sbjct: 88  RVAVVGRPNVGKSALFNRLTGTKRAIVYDEPGVTRDRMYVRAYWGEHEFMMVDTGGLENL 147

Query: 281 DDIVE---------------KEGIKRTFLEVENADLILLLKEINSKKEISFPK------- 318
               E                    +    V  A +++ + +       +          
Sbjct: 148 PANPEGGPKTDTVGGVEILPGMIEAQAAEAVREASVLIFVVDGQVGLTAADMDIFAWLRR 207

Query: 319 ---NIDFIFIGTKSDLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNK 365
               I       K +  +   ++               S+ +G G  EL++ + + L   
Sbjct: 208 THSKIPLHLAVNKCESTTKGEDQILEFWSLGDVTPLAVSAISGTGTGELLDNMCATLPPP 267

Query: 366 FKKLPFSIPSHK 377
            +         +
Sbjct: 268 PQVSEDENAEEE 279


>gi|163845608|ref|YP_001633652.1| GTP-binding protein Era [Chloroflexus aurantiacus J-10-fl]
 gi|163666897|gb|ABY33263.1| GTP-binding protein Era [Chloroflexus aurantiacus J-10-fl]
          Length = 469

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 85/214 (39%), Gaps = 25/214 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L NAL  + VAIV+  P TTR  +   L   G  +   DT 
Sbjct: 174 WRSGF-VALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTP 232

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIG 326
           GI E    + K  ++     + NAD+I  + +I+           +++   +      + 
Sbjct: 233 GIHEPSHRLGKLMVELAERTLPNADVICFMVDISQPPTRLDRMIAQQVQRARGHKL-LVL 291

Query: 327 TKSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D       E              +  IS+    GL  L+++I + L       P   
Sbjct: 292 NKVDQKPKRPGENYLPAYRELGQWEMEIAISARRRLGLTALLSEISARLPEGPPLYPLDQ 351

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
            + +      ++ VR   +  L +++    I  E
Sbjct: 352 MTDQTEQQLAAEFVREKALFYL-QQEVPHAIAIE 384


>gi|329770413|ref|ZP_08261795.1| GTP-binding protein engA [Gemella sanguinis M325]
 gi|328836536|gb|EGF86196.1| GTP-binding protein engA [Gemella sanguinis M325]
          Length = 435

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 16/150 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  +    +  E      +  ++G  N GKSSL N +  K+  I ++I GTTRD 
Sbjct: 154 DLLDEVCKNFKVLEEDEED-EKIRFSLIGRPNVGKSSLINTILGKERVIASEIAGTTRDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +  D    G    + DTAGIR+   +    EK  + R+   +E +D++L++  +N+++ I
Sbjct: 213 IDTDFKYNGDEYVVIDTAGIRKRGKVYENCEKYSVLRSLKAIERSDVVLVV--LNAEEGI 270

Query: 315 ----------SFPKNIDFIFIGTKSDLYST 334
                     +       I +  K D  + 
Sbjct: 271 IEQDKKVAGYAHESGKGVIIVVNKWDAIAK 300



 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 17/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +    ++IV D+ G TRD +    +   Y   + DT GI   D
Sbjct: 6   VAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGIELED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFIGTKSD--- 330
              +K+   +  L ++ AD+I+ L         +     ++ +  +   +    K D   
Sbjct: 66  TPFQKQIRAQAELAIDEADVIIFLTNGRDGVTSDDEEVAKLLYKTDKPVVLAVNKIDNFD 125

Query: 331 ----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
               +Y  Y+  +     IS   G G+ +L++++        +    
Sbjct: 126 MNHMIYDFYSLGFGDPFPISGSHGLGIGDLLDEVCKNFKVLEEDEED 172


>gi|296269475|ref|YP_003652107.1| small GTP-binding protein [Thermobispora bispora DSM 43833]
 gi|296092262|gb|ADG88214.1| small GTP-binding protein [Thermobispora bispora DSM 43833]
          Length = 476

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 82/198 (41%), Gaps = 23/198 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
              + E +++  +++ D++     G+ GE    G    + ++G  N GKS+L N +  + 
Sbjct: 5   MDVTGEYVDEDGWVEADLTEI--TGEGGERPDPGRLPVVAVVGRPNVGKSTLVNRILGRR 62

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            A+V D+PG TRD +  +   +G    + DT G       +     ++  +  E AD++L
Sbjct: 63  AAVVEDVPGVTRDRVAYEASWQGRRFTLVDTGGWDPDATGMALRIAEQAQVAAELADVVL 122

Query: 304 LLKEIN--------SKKEISFPKNIDFIFIGTKSD----------LYSTYTEEYDHLISS 345
            + +          +   +        + +  K+D          L+S    E  + IS+
Sbjct: 123 FVVDATVGVTDADEAVGSVLRRSGKPVLLVANKADNQQVELEATALWSLGLGE-PYPISA 181

Query: 346 FTGEGLEELINKIKSILS 363
             G G  +L++ +   L 
Sbjct: 182 LHGRGTGDLLDAMLDALP 199



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 27/183 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   ++ ++G  N GKSSL N +A ++  +V  +PGTTRD +   ++L G   +  DTAG
Sbjct: 210 RGPRRVALVGRPNVGKSSLLNRMAGEERVLVDPMPGTTRDPVDELIELGGKTYRFVDTAG 269

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIG- 326
           IR  D      +     RT   +E ++  ++L + +        + IS         +  
Sbjct: 270 IRRRDRELKGADFYAAMRTRSALERSEAAVVLIDASEPLTEQDLRIISLVAESGRAMVLA 329

Query: 327 -TKSDLYST-----YTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKL 369
             K DL          +E D             IS+ TG  +E+L   I   L +   ++
Sbjct: 330 FNKWDLLDEERRYYLEKEIDRKLVRTPWAIRVNISAKTGRHVEKLGPAIDRALESWGTRI 389

Query: 370 PFS 372
           P +
Sbjct: 390 PTA 392


>gi|170740822|ref|YP_001769477.1| GTP-binding protein EngA [Methylobacterium sp. 4-46]
 gi|168195096|gb|ACA17043.1| small GTP-binding protein [Methylobacterium sp. 4-46]
          Length = 446

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  + +A+V D PG TRD    +  L      I DTAG+ E D
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGEARLGHLRFTIIDTAGLEEAD 65

Query: 282 DIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
                     +T   +  AD +L + +  +          E+    +   I +  K++  
Sbjct: 66  AESLAGRMRAQTEAAIAEADAVLFVVDARAGLLPADQPFAELVRRADKPVILLANKAEGG 125

Query: 333 STYTEEY---------DHLISSFTGEGLEELINKIKSILS 363
           +     Y            +S+  GEG+ +LI+ +  IL 
Sbjct: 126 AGLAGAYEAFGLGLGDPVPVSAEHGEGMGQLIDALADILP 165



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 115/324 (35%), Gaps = 37/324 (11%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSS 156
            +     L  A+    + R     +  + EA+++  ++ +   +         +      
Sbjct: 54  TIIDTAGLEEADAESLAGRMRAQTEAAIAEADAVLFVVDARAGLLPADQPFAELVRRADK 113

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
                 +K         A   F          S E    +  L + ++  + + +  +  
Sbjct: 114 PVILLANKAEGGAGLAGAYEAFGLGLGDPVPVSAEHGEGMGQLIDALADILPEAEDDDEE 173

Query: 217 R--NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
                 ++ I+G  NAGKS+L N +  +D  +V    G TRD +++D +  G  +K+ DT
Sbjct: 174 GEGKPLRVAIVGRPNAGKSTLINRMLGEDRLLVGPEAGITRDSISLDWEWRGRRIKLHDT 233

Query: 275 AGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFI 325
           AG+R     DD +EK  +      V  A+++++L +     E      +   +      +
Sbjct: 234 AGMRRRARVDDKLEKLAVSDGLRAVRFAEVVVVLLDATIPFEKQDLTIVDLVEQEGRALV 293

Query: 326 --GTKSDLYS------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
               K DL +                           +S   GEG++ L+  + S     
Sbjct: 294 IGLNKWDLVADQPGLLKELREKAARLLPQVRGAPIVPLSGLAGEGIDRLMQGVVSASDVW 353

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRY 389
            +++P +     R    LS+ V+ 
Sbjct: 354 NRRVPTA-----RINQWLSEAVQA 372


>gi|254492694|ref|ZP_05105865.1| putative GTPase [Methylophaga thiooxidans DMS010]
 gi|224462215|gb|EEF78493.1| putative GTPase [Methylophaga thiooxydans DMS010]
          Length = 468

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 28/210 (13%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           E+L +I            +       R +  ++ +LG  N GKS+L N L  ++  +  D
Sbjct: 153 ELLEEIKVCLPQAEVLFEEEDEATDDRPDDIRLAVLGRPNVGKSTLINRLLGEERVVAFD 212

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLK 306
            PGTTRD + I  + +G    + DTAG+R   +  + +EK  + +T   +E+A++ LL+ 
Sbjct: 213 EPGTTRDSIHIPFEKDGVNYTLIDTAGVRRRSKVSEKLEKFSVLKTLQALEDANVALLVL 272

Query: 307 EINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------HL 342
           + +            +        +    K D       E+                 H 
Sbjct: 273 DAHEGIVEQDLHLAGLILESGRAVVLAVNKWDGLEKSEREWVATNIERRLPFMNFAKTHF 332

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           IS+  G G+  L+  ++    +   K+P S
Sbjct: 333 ISALHGSGVGLLLKTVRQAYQSAMTKVPTS 362



 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 19/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   A+V D  G TRD +   +  E     + DT G+ +  
Sbjct: 5   IALVGRPNVGKSTIFNRLTRSRDALVADYAGLTRDRIYGTVREENLDFILIDTGGLTDQT 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK----- 328
           D +     K+  L ++ ADL+L + +  +          +           +  K     
Sbjct: 65  DNMSDLMRKQAKLAIDEADLVLFIVDGRAGLMPSDTDVAQQLRSDGKPVRLVINKTEGEQ 124

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                +D YS    E   +IS+  G G  EL+ +IK  L   
Sbjct: 125 REMVAADFYSLGLGE-PQVISATQGRGFTELLEEIKVCLPQA 165


>gi|227542010|ref|ZP_03972059.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182225|gb|EEI63197.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 537

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N    +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 99  VAVVGRPNVGKSSLVNRFLGRREAVVEDTPGVTRDRVSYLAEWNGQRFWVQDTGGWDPDA 158

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
             +     ++  + +E AD+I+++ +    I +  E+        ++  I +  K D   
Sbjct: 159 KGIHAAIARQAEVAMETADVIVMVVDTNVGITASDEVMARNLQRSDVPVILVANKVDSPK 218

Query: 334 TYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              E         +Y + +S+  G+G  +++++I  +  ++ ++   +
Sbjct: 219 QEAETAEFWGLGLDYPYPVSAQHGKGGADVLDQILELFPDEPRQTSIT 266



 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 86/235 (36%), Gaps = 33/235 (14%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAK 241
           D     S +       + + I            I  G + + ++G  N GKSSL N L+ 
Sbjct: 232 DYPYPVSAQHGKGGADVLDQILELFPDEPRQTSITEGPRRVALVGKPNVGKSSLLNKLSN 291

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVEN 298
           ++ ++V ++ GTT D +   + LEG L K  DTAG+R         E     RT   ++ 
Sbjct: 292 EERSVVDNVAGTTVDPVDSLVQLEGGLWKFIDTAGLRRKVKNASGHEYYASLRTKTAIDA 351

Query: 299 ADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------- 339
           A++ +L+ + +            +        +    K DL      +Y           
Sbjct: 352 AEVCILIIDASEPISEQDQKLLGMIVESGKALVIAFNKWDLVDEDRRDYLDREIDEQLAH 411

Query: 340 -----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                   IS+ TG  L++L   +   L +  +++     ++      L Q +  
Sbjct: 412 VPWAKRINISAKTGRALQKLEPVMLEALESWDQRVSTGQLNNW-----LRQAIAA 461


>gi|332673360|gb|AEE70177.1| ribosome-associated GTPase EngA [Helicobacter pylori 83]
          Length = 460

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 25/198 (12%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + S  +     E      ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   +
Sbjct: 182 LESLENNAPKEETKEEVIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETI 241

Query: 263 DLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEIS 315
            +    +   DTAGIR    I  +EK  ++RT   +E + + LL+ ++++      ++IS
Sbjct: 242 LIGDQKICFVDTAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSTPFVELDEKIS 301

Query: 316 FPKNID---FIFIGTKSDLYSTYTEEY---------------DHLISSFTGEGLEELINK 357
              +      I I  K D+     EE                    S      ++E+ +K
Sbjct: 302 SLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSCLKTRHIDEIKHK 361

Query: 358 IKSILSNKFKKLPFSIPS 375
           I  +     K++P S+ +
Sbjct: 362 IIEVYECFSKRIPTSLLN 379



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 129

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS+    G+  LI+ + + L+
Sbjct: 130 EKERAYAFSSFGMPKSFNISASHNRGISALIDAVLNALN 168


>gi|256383817|gb|ACU78387.1| ribosome-associated GTPase EngA [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256384647|gb|ACU79216.1| ribosome-associated GTPase EngA [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455372|gb|ADH21607.1| ribosome-associated GTPase EngA [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 435

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 14/154 (9%)

Query: 198 FLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + + S+I   K  EII++   KI I+G  N GKSSL N+L  ++  IV++I GTT D
Sbjct: 154 DLLDKVISYI--SKNEEIIKDDSTKIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLD 211

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            + I          + DTAGIR+       +EK    R+   + NAD++LL+ +      
Sbjct: 212 AVDISFSYNKKKYTVIDTAGIRKKSKLGQTIEKYSYLRSLSAISNADIVLLMIDATKPIT 271

Query: 312 ------KEISFPKNIDFIFIGTKSDLYSTYTEEY 339
                   + + +    I +  K DL      E 
Sbjct: 272 DQDTNIGGLIYDEKKPVIIVVNKWDLIKNKETEI 305



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN + K+  +IV + PG TRD +    +       + DT GI  +D
Sbjct: 6   VAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSSAEWLTREFILIDTGGISLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTKSDLYS 333
            +   E   +T + +E AD+I+ + +      N  K I+          I    K D  +
Sbjct: 66  QLFSNEIKLQTQIAIEQADVIIFVVDFLNNLDNDDKMIAKILHKSKKPVILAVNKYDKKT 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
                Y  +         ISS  G G+ +L++K+ S +
Sbjct: 126 IDDHNYQFMSLGFSDLYFISSTHGIGVGDLLDKVISYI 163


>gi|23015371|ref|ZP_00055149.1| COG1160: Predicted GTPases [Magnetospirillum magnetotacticum MS-1]
          Length = 464

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 18/171 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-R 278
           + + I+G  N GKS+LFN L  K +AIV D+PG TRD       L G   ++ DTAG   
Sbjct: 3   FTVAIIGRPNVGKSTLFNRLVGKRLAIVHDLPGVTRDRREGRASLLGMEFQVVDTAGFED 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSD 330
           +T D +E     +T + V  AD+ LLL +  +     +  F  +        I +  K +
Sbjct: 63  DTGDSIEARMRHQTDMAVSEADVALLLIDARAGVTPLDRHFADHLRRLPTPVILVANKCE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +     Y+           +S+  GEG+ EL   ++          P  
Sbjct: 123 GKAGMPGLYESYGLGMGEPVAVSAEHGEGMYELFEALRDHAIKAGALTPDG 173



 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 81/187 (43%), Gaps = 29/187 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N GKS+L N L  +D  +     G TRD + ++ +  G  +K+ DTAG+R+
Sbjct: 195 LTMAIVGRPNVGKSTLGNQLLGQDRLLTGPEAGLTRDAIAVEWEHRGRRMKLVDTAGLRK 254

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTK 328
                D +EK  +  T   +  +++++L+ +  +   K++++  +         +    K
Sbjct: 255 KAQIYDAIEKLSVGNTIETIRMSEVVVLVMDAAAILDKQDLTIARMVVEEGRALVLAINK 314

Query: 329 SDLYS------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D+                             +S+ TG+G+E L++ +    +N  +++P
Sbjct: 315 WDVVDDPQTALKRLKDRLETSLPQAKGVTTVTLSALTGKGIERLMDGVLDTWTNWNRRIP 374

Query: 371 FSIPSHK 377
            +  +  
Sbjct: 375 TAQLNRW 381


>gi|160939128|ref|ZP_02086479.1| hypothetical protein CLOBOL_04022 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438091|gb|EDP15851.1| hypothetical protein CLOBOL_04022 [Clostridium bolteae ATCC
           BAA-613]
          Length = 442

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 35/233 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H    ++ E      +I ++G  N GKSS+ N L  ++  IV+DI GTTRD 
Sbjct: 156 DLLDEVVKHFDSEQMEEEEDERPRIAVVGKPNVGKSSIINKLVGENRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++  EG      DTAG+R    I    E+  I RT   VE AD+++++ +       
Sbjct: 216 VDTEVIHEGTPYVFIDTAGLRRKSKIKEELERYSIIRTVSAVERADVVVVVIDATEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                  I+  +    I    K D                T + + E   KIK +LS   
Sbjct: 276 QDAKIAGIAHERGKGIIVAVNKWDAIEK------------TDKTIYEYTRKIKEVLSFIP 323

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
                 I +       L++    +++   N+           LR+A+  L +I
Sbjct: 324 YAEYLFISAATGQR--LTKLFEMIDVVRQNQN----------LRVATGVLNEI 364



 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 19/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +A   ++IV D PG TRD +  D D       + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNVIAGDTISIVKDTPGVTRDRIYADCDWLNMNFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + +  AD+I+ + ++            ++    +   +    K D  
Sbjct: 66  KDIILSQMREQAEIAISTADVIIFIVDVRQGLVDSDSKVADLLRKSHKPVVLAVNKVDSV 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSIL 362
           + Y  +              +S+ +  G+ +L++++    
Sbjct: 126 AKYGNDVYEFYNLGIGEPVAVSAASRLGIGDLLDEVVKHF 165


>gi|150015731|ref|YP_001307985.1| GTP-binding protein Era [Clostridium beijerinckii NCIMB 8052]
 gi|189037260|sp|A6LRP9|ERA_CLOB8 RecName: Full=GTPase Era
 gi|149902196|gb|ABR33029.1| GTP-binding protein Era [Clostridium beijerinckii NCIMB 8052]
          Length = 298

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 87/209 (41%), Gaps = 24/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + ++IV++ P TTR+ +   L  + Y +   DT GI +  
Sbjct: 7   VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGDDYQMIFVDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD--- 330
             + +  +       ++ DL+L L   + +         E    K      +  K D   
Sbjct: 67  HKLGEYMVNSAKESTKDVDLVLFLTNPDEEIGKGDKFILETLRDKKCPVFLVLNKVDEST 126

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     Y++E+       IS+  G+ ++ L+  +K  +    K  P  + +  +  
Sbjct: 127 QDRVAKSLEMYSKEFKFAEIVPISAIKGKNVDVLVELMKKAMPEGPKYYPDDMITDVQEK 186

Query: 381 YHLSQTVRYLEMASLNE---KDCGLDIIA 406
           + +S+ +R   + +L +       +DII 
Sbjct: 187 FVVSEIIREKALRTLRDEVPHGIAVDIIQ 215


>gi|320108687|ref|YP_004184277.1| ribosome-associated GTPase EngA [Terriglobus saanensis SP1PR4]
 gi|319927208|gb|ADV84283.1| ribosome-associated GTPase EngA [Terriglobus saanensis SP1PR4]
          Length = 633

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 11/134 (8%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           GE      K+ I+G  N GKS+L NAL   D +IV+ I GTTRD +   ++  G+  +  
Sbjct: 356 GEYDSKETKVAIIGRPNVGKSTLLNALTGTDRSIVSPIAGTTRDAVDELVERNGHGFRFV 415

Query: 273 DTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNID 321
           DTAGIR         EK  +      +E AD+ LL+ +               +      
Sbjct: 416 DTAGIRRKGKTTLMAEKLSVIMARKHLEAADVGLLIIDATEGVAALDANIGGYAHESGRS 475

Query: 322 FIFIGTKSDLYSTY 335
            I +  K DL +T+
Sbjct: 476 VIIVVNKWDLVTTH 489



 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 86/228 (37%), Gaps = 23/228 (10%)

Query: 159 GQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN--DILFLKNDISS---HISQGKLG 213
               +      S   A  D + +   +    +  L+  +    +  +++    I + +  
Sbjct: 97  RDIKEAAIERASARHAKPDSASQTAAEEQRPRTHLSALEDRETERAVAASLPLIEELQKP 156

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
               +   I + G  N GKS+LFN L     +IV D PG TRD +  +++ +    +I D
Sbjct: 157 SAAIDAPLIAVCGRPNVGKSTLFNRLTGTRRSIVGDEPGITRDRIYGEIEWQSEYARIVD 216

Query: 274 TAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIF 324
           T G + + + ++  E  ++  + ++ AD I+++ +  ++          I          
Sbjct: 217 TGGVVPDDEALIPSEIYRQARVALDEADAIIMVVDGRTELAAPDLELARILLRSGKHIFL 276

Query: 325 IGTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
              K D     ++  +            S+    G+ +L++ +   L 
Sbjct: 277 AVNKMDTVQITSDAENFRQLGFRDVFAISAEHNNGIGDLLDAVFETLP 324


>gi|326803715|ref|YP_004321533.1| ribosome biogenesis GTPase Der [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651282|gb|AEA01465.1| ribosome biogenesis GTPase Der [Aerococcus urinae ACS-120-V-Col10a]
          Length = 436

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS++FN +A + ++IV D+PG TRD +    +  G  +++ DT GI  
Sbjct: 4   LNIAIVGRPNVGKSTIFNRIAGQRISIVEDVPGVTRDRVYAQGEWLGRKLRLIDTGGIEF 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL 331
            D+   ++   +  + VE ADLI+++  +             +    +   +    K D 
Sbjct: 64  NDEPFVEQIRLQAEIAVEEADLIIMMTSVVDGVTKTDEMIARLLQKSDKPVLLAVNKVDN 123

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
                E YD            S   G G+ +L+ +I  +  
Sbjct: 124 PELQAEIYDFYRLGLNDPYPISGAHGLGIGDLLAEIYRLFP 164



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 15/150 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L  +I                    ++G  N GKSSL NA+  ++  IV+DI GTTRD 
Sbjct: 154 DLLAEIYRLFPLEDEDSEDEETISFALIGRPNVGKSSLVNAILGENRVIVSDIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +           KI DTAGIR    +    EK  + R+   +E A ++LL+  +N+++ I
Sbjct: 214 VDTYFSYNERSFKIIDTAGIRRKGRVSESTEKYSVMRSMSAIEQASVVLLV--LNAEEGI 271

Query: 315 ----------SFPKNIDFIFIGTKSDLYST 334
                     +       I +  K D    
Sbjct: 272 RDQDKTVAGYAHEAGKGIIILVNKWDALKK 301


>gi|148265177|ref|YP_001231883.1| GTP-binding protein EngA [Geobacter uraniireducens Rf4]
 gi|189037149|sp|A5G692|DER_GEOUR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|146398677|gb|ABQ27310.1| small GTP-binding protein [Geobacter uraniireducens Rf4]
          Length = 441

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN +  +  A+V D+PG TRD    ++D       + DT G   ET
Sbjct: 5   IAIVGRPNVGKSTLFNRIVGRRKAMVDDMPGVTRDRNYANVDRFDVPFILIDTGGFEPET 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY 332
           +D + ++  +++ L +  AD+IL + +             E+    +    ++  K D  
Sbjct: 65  NDRLLQQMREQSQLAMAEADVILFVMDGRDGLTPADVEVVEMLRRVDKPIFYLINKIDGD 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNK 365
              T   D            S+    G+ +L++++   L   
Sbjct: 125 KQETAIGDFYTLGVDTIFTVSAEHNRGVNDLMDEVIKALPKG 166



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 91/244 (37%), Gaps = 12/244 (4%)

Query: 99  LAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSL 157
           L               ++  E  ++ + EA+ +  ++     +    + +  M   +   
Sbjct: 54  LIDTGGFEPETNDRLLQQMREQSQLAMAEADVILFVMDGRDGLTPADVEVVEMLRRVDKP 113

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
               I+K+   +        ++   D     S E    +  L +++   + +G   +   
Sbjct: 114 IFYLINKIDGDKQETAIGDFYTLGVDTIFTVSAEHNRGVNDLMDEVIKALPKGSAADTDE 173

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              KI ++G  N GKS+L N L   +  +    PGTTRD +            + DTAGI
Sbjct: 174 EVTKIAVIGRPNVGKSTLVNRLLGIERVVANPTPGTTRDSIDTYFTCNRKRYLLIDTAGI 233

Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
           R   +T + +EK  +  +   +E AD++L++ +               ++      IF+ 
Sbjct: 234 RRKGKTTEKIEKYSVVDSLRSIERADVVLIVIDAEEGVTEQDTKIAGYAYEAGRGCIFVV 293

Query: 327 TKSD 330
            K D
Sbjct: 294 NKWD 297


>gi|115525346|ref|YP_782257.1| GTP-binding protein EngA [Rhodopseudomonas palustris BisA53]
 gi|122295592|sp|Q07LA7|DER_RHOP5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|115519293|gb|ABJ07277.1| small GTP-binding protein [Rhodopseudomonas palustris BisA53]
          Length = 460

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 29/193 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  +   ++ I+G  NAGKS++ N L  ++  + +   GTTRD + + +D +G   +I D
Sbjct: 183 EFSKRPIRVAIVGRPNAGKSTMINHLLGEERLLTSPEAGTTRDSIAVSVDYKGRQFRIFD 242

Query: 274 TAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI------- 323
           TAG+R    I    EK  +      V  A++++L+ +  +K E    +  D I       
Sbjct: 243 TAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMLDAQTKFEEQDLRIADLIEREGRAL 302

Query: 324 -FIGTKSDLYSTYTE-------EYDHL-----------ISSFTGEGLEELINKIKSILSN 364
                K DL   +         E DH            +S   GEG++ L++ I+   + 
Sbjct: 303 VIAVNKWDLVERHPGQIGALRTEADHWLPQVKGVPIVAVSGLMGEGIDRLMSAIEDSYAT 362

Query: 365 KFKKLPFSIPSHK 377
             +++P +  +  
Sbjct: 363 WNRRVPTAALNRW 375



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +   I+G  N GKS+LFN L  + +A+V D PG TRD    +  L      + DTAG+ E
Sbjct: 3   FTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGEGRLGDLEFTLIDTAGLDE 62

Query: 280 TDDIVEKE-GIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                  E   ++T   +E AD ++ + +  +          + +   N   I +  KS+
Sbjct: 63  GAKGSLTERMQQQTETAIELADALMFVFDARAGLTPNDRAFADFARRANKPVILVANKSE 122

Query: 331 LYS---------TYTEEYDHLISSFTGEGLEELINKIKSILS 363
             +                  IS+  GEGL EL +  ++++ 
Sbjct: 123 GKAGEIGAMESYALGLGDPVQISAEHGEGLSELYDAFRALMP 164


>gi|119025833|ref|YP_909678.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765417|dbj|BAF39596.1| GTP-binding protein engA [Bifidobacterium adolescentis ATCC 15703]
          Length = 675

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 81/413 (19%), Positives = 143/413 (34%), Gaps = 76/413 (18%)

Query: 49  SLRYFFGLDGRILDKGLLI-----VF-----------PSPESFTG-EDSAE--------- 82
            +     LD   +D+ L+       F             P+ +   ED +E         
Sbjct: 9   CMHKGIDLDAETIDEQLVTETVGEFFTDGHFDISVDPDDPKVYADDEDISEAIRSSEVSS 68

Query: 83  -FHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA-FENGKIDLLEAES----LADLIS 136
                  I  V  +L    +    R A+   FS  A       D+    +    +  L++
Sbjct: 69  HVSKVSNIIPVRHVLIAAQRAYIAREASVDSFSEGAGIVAEGRDITTVVAPDAEVRILLT 128

Query: 137 SETE-MQRRLSMEGMSG----------ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +  E  Q R S + +SG          +  S    +      + +   +DL+F E  DV 
Sbjct: 129 AREEVRQARRSGQAVSGVGAENVAARDKADSKVTNFTSAAEGVLTVDNSDLNFGETLDVL 188

Query: 186 NFSSKEVLNDIL-----------FLKNDISSHIS-QGKLGEIIRNGYK----IVILGHSN 229
                + + +              L       I      G   +NG K    + ++G  N
Sbjct: 189 VRIVDDAIEEQEYRQYVSNLEGYELDEGDEELIDGTAFSGGESKNGPKPVGVLAVVGRPN 248

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     + +E    
Sbjct: 249 VGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWCGTDFKLVDTGGWETDVEGIESAIA 308

Query: 290 KRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYST--YTEEY 339
            +  + V+ AD ++L+ +      ++ + I                K D   +   T E+
Sbjct: 309 SQAQIAVQLADAVILVVDGLVGLTDTDERIVKMLRAAGKPVTLAVNKVDDRESEYLTAEF 368

Query: 340 -------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
                   + IS+  G G+ EL++     L    +   F  PSH R +  + +
Sbjct: 369 WKMGLGEPYGISAMHGRGIGELLDAALDSLKKAERTSGFLTPSHLRRVALVGR 421



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 111/297 (37%), Gaps = 51/297 (17%)

Query: 126 LEAESLADLISSETEMQRRLS------MEGMSG--ELSSLYGQWIDKLTHIRSFIEADLD 177
            + E +   I+S+ ++  +L+      ++G+ G  +      + +       +     +D
Sbjct: 298 TDVEGIESAIASQAQIAVQLADAVILVVDGLVGLTDTDERIVKMLRAAGKPVTLAVNKVD 357

Query: 178 FSEEEDVQNFSSKEVLNDI--------LFLKNDISSHISQGKLGEIIRNGY-------KI 222
             E E +     K  L +           +   + + +   K  E   +G+       ++
Sbjct: 358 DRESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALDSLKKAERT-SGFLTPSHLRRV 416

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G  N GKSSL N LA ++  +V D+ GTTRD +   + ++G      DTAGI+    
Sbjct: 417 ALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGIKRRLH 476

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDL 331
                E     RT   +E ++L L+L + +        K            + +  K DL
Sbjct: 477 KLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRCIVLVFNKWDL 536

Query: 332 YSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              +  +                    +S+ TG     L N ++  L++  K++P  
Sbjct: 537 MDEFDRQRMERLWKTEFNRVTWAQRVNLSAKTGWHTNRLANAMRGALASWDKRIPTG 593


>gi|24380270|ref|NP_722225.1| GTP-binding protein EngA [Streptococcus mutans UA159]
 gi|37999686|sp|Q8DS90|DER_STRMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|24378281|gb|AAN59531.1|AE015016_15 phosphoglycerate dehydrogenase [Streptococcus mutans UA159]
          Length = 436

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 87/210 (41%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++      E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVDNLPTEAQEES-SDIIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D EG    + DTAG+R++  +    EK  + R    ++ +D++L++  +N+++ 
Sbjct: 213 IDTTFTDEEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDIVLMV--LNAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLI------------------SS 345
           I          +       + +  K D                               S+
Sbjct: 271 IREYDKRIAGFAHEAGKGIVVVVNKWDAIKKDNRTVAQWEADIRDNFQYIPYAPIVFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK +  ++  ++P ++ +
Sbjct: 331 VTKQRLHKLPDVIKQVSQSQNTRIPSAVLN 360



 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       I DT GI + D
Sbjct: 6   VAIVGRPNVGKSALFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSIIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +               +I +  +   I    K D   
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFVVSAKEGITDADEYVAKILYRTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +  YD           +SS  G G  ++++ I   L  + ++    I 
Sbjct: 126 MRSAIYDFYALGLGDPYPVSSAHGIGTGDVLDAIVDNLPTEAQEESSDII 175


>gi|77405817|ref|ZP_00782901.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae
           H36B]
 gi|77414237|ref|ZP_00790399.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae 515]
 gi|77159726|gb|EAO70875.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae 515]
 gi|77175604|gb|EAO78389.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae
           H36B]
 gi|319745628|gb|EFV97929.1| ribosome-associated GTPase EngA [Streptococcus agalactiae ATCC
           13813]
          Length = 436

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 94/210 (44%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  +  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DILDAIVENLPVEEENENP-DIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +  + +D +G    + DTAG+R++  +    EK  + R+   ++ +D++L++  IN+++ 
Sbjct: 213 IDTNFVDSQGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHEAGKGIIIVVNKWDTIEKDNHTVSQWEADIRDNFQFLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++ K++P ++ +
Sbjct: 331 ETKQRLHKLPDMIKRISESQNKRIPSAVLN 360



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSRILYKTNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD            SS  G G  ++++ I   L  + +     I 
Sbjct: 126 MRNDIYDFYSLGLGDPYPLSSVHGIGTGDILDAIVENLPVEEENENPDII 175


>gi|254501747|ref|ZP_05113898.1| putative GTPase [Labrenzia alexandrii DFL-11]
 gi|222437818|gb|EEE44497.1| putative GTPase [Labrenzia alexandrii DFL-11]
          Length = 478

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 18/159 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L      I DTAG+ 
Sbjct: 5   GATVAIVGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGEARLGDLRFTIIDTAGLE 64

Query: 279 ETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           + D    E    ++T   +E AD +L + +  +           ++       I +  K+
Sbjct: 65  DADKASLEGRMRRQTEEAIETADAVLFVIDARAGVTPLDAHFAAVARKTTRPVILLANKA 124

Query: 330 DLYSTYTEEYD---------HLISSFTGEGLEELINKIK 359
           +  +  +  Y+           +S+  GEGL +L + +K
Sbjct: 125 EGRAGVSGLYESFSLGLGEPIAVSAEHGEGLSDLYDALK 163



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 11/135 (8%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I    ++ I+G  NAGKS+L N +  +D  +     G TRD +++D       +K+ DTA
Sbjct: 202 IERPLRVAIVGRPNAGKSTLINQMVGEDRMLTGPEAGITRDSISVDWTWHDRHIKLFDTA 261

Query: 276 GIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIF 324
           GIR+   +    EK  +      ++ A+++++  +      K+++        +    + 
Sbjct: 262 GIRKKARVQEKLEKLSVADALRAIKFAEVVVVTLDATMSFEKQDLQIIDLVAREGRALVI 321

Query: 325 IGTKSDLYSTYTEEY 339
              K DL     E +
Sbjct: 322 AVNKWDLIEDREEAW 336


>gi|317012645|gb|ADU83253.1| GTP-binding protein EngA [Helicobacter pylori Lithuania75]
          Length = 461

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 27/206 (13%)

Query: 197 LFLKNDISSHISQGKLG--EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
             L  DI   +        E      ++ I+G  N GKSSL NAL KK+ ++V+ + GTT
Sbjct: 175 QDLDADILESLETPNNALEENKEEIIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTT 234

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK- 311
            D +   + +    +   DTAGIR    I  +EK  ++RT   +E + ++LL+ ++++  
Sbjct: 235 IDPIDETILIGDQKICFVDTAGIRHRGKILGIEKYALERTQKALEKSHIVLLVLDVSAPF 294

Query: 312 ----KEISFPKNID---FIFIGTKSDLYSTYTEEY---------------DHLISSFTGE 349
               ++IS   +      I I  K D+     EE                    S     
Sbjct: 295 VELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSCLKAC 354

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
            ++E+ +KI  +     K++P S+ +
Sbjct: 355 HIDEIKHKIIEVYECFSKRIPTSLLN 380



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 98/221 (44%), Gaps = 38/221 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERAYAFSSF-----------------GIPKSFNISVSHNRGISALIDAVLNALNLN 170

Query: 394 SLNEKDCGLDIIAENLRLASVSLGK---------ITGCVDV 425
            + E+D   DI+ E+L   + +L +         I G V+V
Sbjct: 171 QIIEQDLDADIL-ESLETPNNALEENKEEIIQVGIIGRVNV 210


>gi|302386477|ref|YP_003822299.1| ribosome-associated GTPase EngA [Clostridium saccharolyticum WM1]
 gi|302197105|gb|ADL04676.1| ribosome-associated GTPase EngA [Clostridium saccharolyticum WM1]
          Length = 442

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 97/233 (41%), Gaps = 35/233 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++++ H    +  E   +  +I I+G  N GKSS+ N L  ++  IV++I GTTRD 
Sbjct: 156 DLLDEVAKHFDLSETEEEEDDRPRIAIVGKPNVGKSSIINQLLGENRVIVSNIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--- 311
           +  ++  EG      DTAG+R    I    E+  I RT   VE AD+++++ +       
Sbjct: 216 VDTEIVHEGTEYVFIDTAGLRRKSKIKEELERYSIIRTVTAVERADVVVVVIDAEEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                  I+  +    +    K D                  + + E  NKIK+ LS   
Sbjct: 276 QDAKIAGIAHERGKGIVVAVNKWDAIEK------------NDKTIYEYTNKIKNTLSFM- 322

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
               F   S K  L  +++    ++M   N+           LR+A+  L +I
Sbjct: 323 PYAEFVFISAKTGLR-MNKLFEVIDMVRENQT----------LRIATGILNEI 364



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA   ++IV D PG TRD +  D         + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGDTISIVKDTPGVTRDRIYADCTWLDMNFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + +  AD+I+ + ++            ++        +    K D +
Sbjct: 66  SDIILSQMREQAEIAIATADVIIFIVDVRQGLVDADSKVADMLRKSKKPIVLAVNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +  +              +S+ +  GL +L++++         +    
Sbjct: 126 QKFGNDVYEFYNLGIGDPIPVSAASRLGLGDLLDEVAKHFDLSETEEEED 175


>gi|222523307|ref|YP_002567777.1| GTP-binding protein Era [Chloroflexus sp. Y-400-fl]
 gi|222447186|gb|ACM51452.1| GTP-binding protein Era [Chloroflexus sp. Y-400-fl]
          Length = 469

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 85/214 (39%), Gaps = 25/214 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L NAL  + VAIV+  P TTR  +   L   G  +   DT 
Sbjct: 174 WRSGF-VALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTP 232

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIG 326
           GI E    + K  ++     + NAD+I  + +I+           +++   +      + 
Sbjct: 233 GIHEPSHRLGKLMVELAERTLPNADVICFMVDISQPPTRLDRMIAQQVQRARGHKL-LVL 291

Query: 327 TKSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D       E              +  IS+    GL  L+++I + L       P   
Sbjct: 292 NKVDQKPKRPGENYLPAYRELGQWEMEIAISARRRLGLTALLSEISARLPEGPPLYPLDQ 351

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
            + +      ++ VR   +  L +++    I  E
Sbjct: 352 MTDQTEQQLAAEFVREKALFYL-QQEVPHAIAIE 384


>gi|22537760|ref|NP_688611.1| GTP-binding protein EngA [Streptococcus agalactiae 2603V/R]
 gi|76788647|ref|YP_330237.1| GTP-binding protein EngA [Streptococcus agalactiae A909]
 gi|76798461|ref|ZP_00780699.1| GTP-binding protein engA [Streptococcus agalactiae 18RS21]
 gi|77408494|ref|ZP_00785232.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae
           COH1]
 gi|77411928|ref|ZP_00788259.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae
           CJB111]
 gi|41017044|sp|Q8DY73|DER_STRA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123601399|sp|Q3JZR6|DER_STRA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|22534651|gb|AAN00484.1|AE014265_13 phosphoglycerate dehydrogenase-related protein [Streptococcus
           agalactiae 2603V/R]
 gi|76563704|gb|ABA46288.1| GTP-binding protein EngA, putative [Streptococcus agalactiae A909]
 gi|76586195|gb|EAO62715.1| GTP-binding protein engA [Streptococcus agalactiae 18RS21]
 gi|77162025|gb|EAO73005.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae
           CJB111]
 gi|77172936|gb|EAO76067.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae
           COH1]
          Length = 436

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 66  APFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSRILYKTNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD            SS  G G  ++++ I   L  + +     I 
Sbjct: 126 MRNDIYDFYSLGLGDPYPLSSVHGIGTGDILDAIVENLPVEEENENPDII 175



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 94/210 (44%), Gaps = 35/210 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  +  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DILDAIVENLPVEEENENP-DIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +  + +D +G    + DTAG+R++  +    EK  + R+   ++ +D++L++  IN+++ 
Sbjct: 213 IDTNFVDSQGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISS 345
           I          +       I +  K D                       +      +S+
Sbjct: 271 IREYDKRIAGFAHETGKGIIIVVNKWDTIEKDNHTVSQWEADIRDNFQFLSYAPIIFVSA 330

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T + L +L + IK I  ++ K++P ++ +
Sbjct: 331 ETKQRLHKLPDMIKRISESQNKRIPSAVLN 360


>gi|163853441|ref|YP_001641484.1| small GTP-binding protein [Methylobacterium extorquens PA1]
 gi|218532301|ref|YP_002423117.1| GTP-binding protein EngA [Methylobacterium chloromethanicum CM4]
 gi|240140861|ref|YP_002965341.1| GTP-binding protein EngA, GTPase [Methylobacterium extorquens AM1]
 gi|254563370|ref|YP_003070465.1| GTP-binding protein EngA, GTPase [Methylobacterium extorquens DM4]
 gi|163665046|gb|ABY32413.1| small GTP-binding protein [Methylobacterium extorquens PA1]
 gi|218524604|gb|ACK85189.1| small GTP-binding protein [Methylobacterium chloromethanicum CM4]
 gi|240010838|gb|ACS42064.1| GTP-binding protein EngA, GTPase [Methylobacterium extorquens AM1]
 gi|254270648|emb|CAX26652.1| GTP-binding protein EngA, GTPase [Methylobacterium extorquens DM4]
          Length = 446

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  + +A+V D PG TRD    +  +     ++ DTAG+ E D
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGEGFIGDVAFRVIDTAGLEEAD 65

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D +      +T   +  AD +L + +  +          E+        I I  K++  
Sbjct: 66  ADSLLGRMRAQTEAAILEADAVLFVIDARAGVLPSDRPFAELVRRSGCPVILIANKAEGG 125

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSIL 362
           +     YD            S+  GEGL  L + ++ +L
Sbjct: 126 AGMAGAYDAFSLGLGDPIPFSAEHGEGLGSLQDALREVL 164



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 98/251 (39%), Gaps = 15/251 (5%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET---EMQRRLS-MEGMSGE 153
            +     L  A+      R     +  +LEA+++  +I +        R  + +   SG 
Sbjct: 54  RVIDTAGLEEADADSLLGRMRAQTEAAILEADAVLFVIDARAGVLPSDRPFAELVRRSGC 113

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213
              L     +    +    +A      +    +    E L  +     ++     +    
Sbjct: 114 PVILIANKAEGGAGMAGAYDAFSLGLGDPIPFSAEHGEGLGSLQDALREVLPEPDEEDED 173

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
                G ++ I+G  NAGKS+L N +  +D  +V    G TRD +++D +  G  +K+ D
Sbjct: 174 GEGGKGLRVAIVGRPNAGKSTLINRMIGEDRLLVGPEAGITRDSISLDWEWRGRRIKLHD 233

Query: 274 TAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDF 322
           TAG+R     DD +EK  +      V  A+++++L +      K++++       +    
Sbjct: 234 TAGMRRRARIDDKLEKLAVSDGLRAVRFAEVVVVLLDATIPFEKQDLTIVDLVESEGRAV 293

Query: 323 IFIGTKSDLYS 333
           +    K DL +
Sbjct: 294 VIGLNKWDLVA 304


>gi|152991112|ref|YP_001356834.1| GTP-binding protein EngA [Nitratiruptor sp. SB155-2]
 gi|166225831|sp|A6Q4R8|DER_NITSB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|151422973|dbj|BAF70477.1| GTP-binding protein, Era/ThdF family [Nitratiruptor sp. SB155-2]
          Length = 462

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 27/226 (11%)

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           LD+ E++  +  + K  +++ L     ++  I++G+  +   N   + ILG  N GKSSL
Sbjct: 153 LDWVEKQLPKKETIKIEIDEELDFDELLA--INEGEKKQEESNEINVAILGRVNVGKSSL 210

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTF 293
            NAL K++ +IV+D+ GTT D +         ++   DTAGIR    I  +EK  + RT 
Sbjct: 211 LNALLKEERSIVSDVAGTTIDTIDESTIYNDKVITFIDTAGIRRRGKIVGIEKYALNRTQ 270

Query: 294 LEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEE------- 338
             +E AD+ LL+ + +        +         +  I +  K D+     EE       
Sbjct: 271 KMLERADVALLVLDASEGITEQDERIAGYIDKYKLACIIVLNKWDIAKKSYEEAVKEVRD 330

Query: 339 --------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                       +S+ T + ++ L + I  +  N    LP    + 
Sbjct: 331 RFKFLSFAPIITLSAKTRKRVDRLYDLILKVYKNYSTWLPTGQLNR 376



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSLFN + K+  AIV++  GTTRDV    + +     +I DT GI + 
Sbjct: 3   KIAIIGKPNVGKSSLFNRILKQRDAIVSETEGTTRDVKRRIVQIGEKEAEILDTGGIEDR 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLY 332
           +++ EK   +++    ++AD+IL + +     +    +              +  K D  
Sbjct: 63  NELFEK-VKQKSLEAAKDADIILYMVDGKKLPDEEDKQIFRSLQKLGKKIALVINKIDND 121

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
                 ++           IS      ++ L++ ++  L  K
Sbjct: 122 KEEENVWNFYEFGTQDIFPISVSHNRKVKRLLDWVEKQLPKK 163


>gi|193216656|ref|YP_001999898.1| GTP-binding protein EngA [Mycoplasma arthritidis 158L3-1]
 gi|193001979|gb|ACF07194.1| GTPase protein EngA [Mycoplasma arthritidis 158L3-1]
          Length = 434

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 11/141 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ +LG +N GKS+L N L+ ++ +IV+DI GTTRD ++  + + G   ++ DTAGI+ 
Sbjct: 172 FKLALLGKTNVGKSTLLNTLSNEERSIVSDIAGTTRDAISSFIKINGEEFEVVDTAGIKR 231

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
                D +E   + R    +E A+L LL+ +   +          I++ +    I I  K
Sbjct: 232 KSKLIDSIEHYSLIRAHAAIEEANLCLLVLDATDEVSHFHQNIIGIAYEQKKPMIVIVNK 291

Query: 329 SDLYSTYTEEYDHLISSFTGE 349
            D     T   D    S   +
Sbjct: 292 WDKIEKDTSTMDKFKKSLAKK 312



 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+ FN L  K  AIV D PG TRD +   +   G    + DT GI  E 
Sbjct: 5   VAIIGKPNVGKSTFFNKLINKRKAIVYDRPGVTRDRIYDVVSWAGSTFTLIDTGGITIEN 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
           DD  E+  I +  + ++ A +I+ L +  +          E+        I    K +  
Sbjct: 65  DDFKEQIKI-QAQVAIDEASVIVFLIDGRNSLTSEDFFVAELLRKSAKKVILAINKIENN 123

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                 L  +        ISS  G+GL +L+++I S    K  +     
Sbjct: 124 NFDFDPLIYSLGFNKIFKISSIHGDGLGDLLDEIISSFDPKTAQESQVF 172


>gi|153812950|ref|ZP_01965618.1| hypothetical protein RUMOBE_03357 [Ruminococcus obeum ATCC 29174]
 gi|149830897|gb|EDM85987.1| hypothetical protein RUMOBE_03357 [Ruminococcus obeum ATCC 29174]
          Length = 441

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFNALA + ++IV D PG TRD +  D+        + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVTWLDKSFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + ++ AD+I+ + ++            ++        + +  K D  
Sbjct: 66  GDIILSQMREQAQIAIDTADVIVFITDVQQGLVDSDAKVADMLRRSQKPVVLVVNKVDSV 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILS 363
             Y  +              IS+    G+ +++++I     
Sbjct: 126 QKYMMDVYEFYNLGIGEPVAISAANRTGIGDMLDEIIKEFP 166



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 29/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + ++I     +    E   +  K+ ++G  N GKSSL N L  +D  IV+DI GTTRD 
Sbjct: 156 DMLDEIIKEFPEDLDAEEDDDIPKVAVVGKPNVGKSSLINKLLGEDRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +  +       DTAG+R      + +E+  + RT   VE AD+++++ +       
Sbjct: 216 VDAKVKWKDREYIFIDTAGLRRKGKIKEEIERYSVIRTVTAVERADVVVVVIDATEGVTE 275

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------------------ISSFTG 348
                  I+  +    I    K D      +                       IS+ +G
Sbjct: 276 QDAKIAGIAHERGKGVIIAVNKWDAVEKDDKTIYKHTNRIREVLAYMPYAELVFISAKSG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L +L   I +++ N+  ++   + +
Sbjct: 336 QRLPKLFETIDAVIENQTLRIQTGVLN 362


>gi|300691802|ref|YP_003752797.1| GTPase involved in ribosome synthesis and maintenance [Ralstonia
           solanacearum PSI07]
 gi|299078862|emb|CBJ51523.1| GTPase involved in ribosome synthesis and maintenance [Ralstonia
           solanacearum PSI07]
          Length = 447

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 15/146 (10%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +  E    G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G   
Sbjct: 171 AEAAEDHGYGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPY 230

Query: 270 KISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI- 325
            + DTAG+R+     + +EK  + +T   + +A++++LL +  ++++IS        FI 
Sbjct: 231 TLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLLLD--AQQDISDQDAHIAGFIV 288

Query: 326 ---------GTKSDLYSTYTEEYDHL 342
                      K D    +  +    
Sbjct: 289 ESGRALVIGVNKWDGLDGHARDRIKH 314



 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 18/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V DIPG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADIPGLTRDRHYGEGRVGERPFIAIDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            + +  E  K+T   V  AD+++ + +     + ++              +    K++  
Sbjct: 65  KEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNKAEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                  D           ISS  G+G+ +L+++   +   +  +L  +   H
Sbjct: 125 KYTAVATDFYELGLGDPRAISSAHGDGVRDLVDEALDLAFAERPELAEAAEDH 177


>gi|213418595|ref|ZP_03351661.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 320

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSDLYS 333
           D VE    +++ L +E AD++L + +  +     + +  K+          +  K+D   
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 D           I++  G G+  L+  +
Sbjct: 125 PDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV 158



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 64/111 (57%), Gaps = 5/111 (4%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N +  ++  +V D+PGTTRD + I ++ +     + DTAG+R+
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRK 262

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT 327
                D VEK  + +T   +E+A+++LL+  I++++ IS        FI  
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGISDQDLSLLGFILN 311


>gi|42525602|ref|NP_970700.1| GTP-binding protein EngA [Treponema denticola ATCC 35405]
 gi|41815613|gb|AAS10581.1| GTP-binding protein EngA [Treponema denticola ATCC 35405]
          Length = 476

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 30/213 (14%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVT 248
            E  ++I  L  ++++ +   K+ E+  +   +I I+G  N GKS+L N L     +I++
Sbjct: 178 AEHGDNISELAEELTAGLDFSKVEELEEDDTIRITIVGKPNTGKSTLANYLTGSSASIIS 237

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLL 305
           ++ GTTRD++  +   +     I DTAGIR    +    E   + R    ++NAD++  L
Sbjct: 238 NVAGTTRDIVEGEFSYKNKKFLIQDTAGIRRKAKVNEDIEYYSVVRAIKSMDNADIVFHL 297

Query: 306 KEI------NSKKEISFPKNI--DFIFIGTKSDLYSTYTEEY------------------ 339
            ++        KK I    N     IF+  K DL     + +                  
Sbjct: 298 IDVQEGLTEQDKKIIVQATNRGLGVIFVLNKWDLMEQTKKAFKDEEERIKVMFGKMDYAP 357

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              IS+  G G++EL+N    +     KK+  S
Sbjct: 358 VLAISANEGTGIKELLNTAVKMFEQLNKKIETS 390



 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 22/175 (12%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           S+    +  +N   I I+G  N GKS+LFN   +K  +I    PG TRD +     + G 
Sbjct: 19  SEFSHQKKYKNIPLIAIVGRPNVGKSTLFNRFLRKRRSITDPTPGVTRDPVEAQAIINGL 78

Query: 268 LVKISDTAGIRET------DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISF 316
            V + DT G + T      +D +++  +++T   ++ AD ILLL +        ++ I F
Sbjct: 79  PVMLVDTGGFKLTRSGDAFEDTIDELVMEKTISTLKKADRILLLLDAGLATAEDEEFIQF 138

Query: 317 PKNIDFIFI--GTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKS 360
            +      +    K++      E  ++          IS+  G+ + EL  ++ +
Sbjct: 139 LRPYFNKLVVAVNKTEGGRLMAEACNYYSYGFKSLTCISAEHGDNISELAEELTA 193


>gi|328675592|gb|AEB28267.1| GTP-binding protein EngA [Francisella cf. novicida 3523]
          Length = 465

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 11/134 (8%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              +  E  R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G+
Sbjct: 172 QTQEHKEQQRHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGH 231

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP---- 317
              I DTAG+R+   +    EK  + +T   ++++++++ + +     S +++S      
Sbjct: 232 KYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGISDQDLSLIHFAI 291

Query: 318 -KNIDFIFIGTKSD 330
                 +    K D
Sbjct: 292 KNGRALVLAVNKWD 305



 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G +N GKS+LFN L     A+V D  G TRD        +     + DT GI +
Sbjct: 3   FLVAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGISD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D   ++   K++ + ++ A+L+  + +  +
Sbjct: 63  KDIGFDEFMAKQSQIAIDEANLVFFVVDGRA 93


>gi|307128641|ref|YP_003880671.1| GTP-binding protein EngA [Candidatus Sulcia muelleri CARI]
 gi|306483103|gb|ADM89973.1| GTP-binding protein EngA [Candidatus Sulcia muelleri CARI]
          Length = 436

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 11/165 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I S   +  L +  +   +I I+G  N GKS+L N L  K+  IVT+I GTTRD 
Sbjct: 154 ELLDSIVSIFRKYDLNKNKKKIPRIAIVGRPNVGKSTLINTLLNKNQNIVTNISGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE- 313
           + +     G    + DTAGIR   +  + +E   + R    ++N+D+ LL+ +I S  E 
Sbjct: 214 IDVFYKKFGIECILVDTAGIRKKKKIKENIEFYSVMRAIKSIQNSDVCLLIIDIKSGFES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
                  I    N   + +  K D      +           + +
Sbjct: 274 QDMNIFKIIENNNKGIVILINKWDFIKKNEKNLSINYEKEIKKKI 318



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G SN GKS+LFN L     +IV    G TRD      +  G    + DT G   ++
Sbjct: 5   VSIVGRSNVGKSTLFNRLIGYRKSIVNYKSGVTRDRNYGFCNWNGIEFCLIDTGGYTNKS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLY 332
           ++I EK+  ++ F  +E +D++L L + +           +I          +  K DL 
Sbjct: 65  ENIFEKKICEQFFFALEESDILLFLVDPSNDILGIDYDISKILLKLKKIIYLVINKIDLS 124

Query: 333 S---------TYTEEYDHLISSFTGEGLEELINKIKSIL 362
                            + ISS  G G  EL++ I SI 
Sbjct: 125 KNRYNTSNFLKLGISNTYCISSINGTGTGELLDSIVSIF 163


>gi|325962917|ref|YP_004240823.1| GTP-binding protein Era [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469004|gb|ADX72689.1| GTP-binding protein Era [Arthrobacter phenanthrenivorans Sphe3]
          Length = 516

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 91/238 (38%), Gaps = 25/238 (10%)

Query: 149 GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHIS 208
              G   +    +    T   +   A +D  E E ++  S +  L D     ++  + + 
Sbjct: 6   QTPGHPGAGEDDYTPTGTDQVAERLAAIDDDEAE-LRAASLRAGLEDYD--LDEEDAALL 62

Query: 209 QGKLGEIIRNGYK-----IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           +G+ G+    G       + I+G  N GKS+L N +  +  A+V D PG TRD +    +
Sbjct: 63  RGEYGDEDFEGPVKLDPVLAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSAN 122

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----IS 315
             G    + DT G       +     ++  + VE AD +L + +      +  E    + 
Sbjct: 123 WNGRNFTLVDTGGWEHDARGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEGVMKML 182

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEY---------DHLISSFTGEGLEELINKIKSILSN 364
                  I +  K D ++   +            + +S+  G G+ +L++ +  +L  
Sbjct: 183 RRSKKPVIMVANKVDDFAQEADSATLWGLGFGEPYPVSALHGRGVADLLDHVMDVLPE 240



 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 30/203 (14%)

Query: 197 LFLKNDISSHISQGKLGE-IIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             L + +   + +    E   R+G   +I ++G  N GKSSL N LA  +  +V +  GT
Sbjct: 228 ADLLDHVMDVLPEFSTIEGTDRSGGPRRIALIGRPNVGKSSLLNKLAGTERVVVDNTAGT 287

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINS 310
           TRD +   ++L G   +  DTAGIR    + +        RT   +E A++ ++L  ++ 
Sbjct: 288 TRDPVDEFIELGGRTWRFVDTAGIRRRQHMAQGADFYASLRTQAALEKAEVAVVLLAVDE 347

Query: 311 K--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSF 346
                     +++       +    K DL       Y                   IS+ 
Sbjct: 348 VLSEQDVRILQLAIESGRALVLAFNKWDLLDDERRRYLEREIEQDLAHVNWAPRVNISAK 407

Query: 347 TGEGLEELINKIKSILSNKFKKL 369
           TG   + L+  +   L N  K++
Sbjct: 408 TGWHKDRLVPALDLALENWDKRI 430


>gi|301059965|ref|ZP_07200844.1| ribosome-associated GTPase EngA [delta proteobacterium NaphS2]
 gi|300445932|gb|EFK09818.1| ribosome-associated GTPase EngA [delta proteobacterium NaphS2]
          Length = 435

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 96/262 (36%), Gaps = 29/262 (11%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           M  +   +       ++K+        A   +    D     S      +  L ND+   
Sbjct: 103 MAHLLRRMQKRVFLVVNKIDGPEKEHLAGEFYQLGYDAVYTLSAAHGYGVKALLNDLVKG 162

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +S  +         ++ +LG  N GKSSL N + K D  +V+++PGTTRD +       G
Sbjct: 163 LSPSEDTGEDSEEIRVAVLGKPNVGKSSLINRILKTDRLVVSELPGTTRDTVDSAFSYGG 222

Query: 267 YLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKE-----INSKKEI---S 315
               + DTAGIR    + E   K  + +    ++   + +LL +      +    I   +
Sbjct: 223 REYLLIDTAGIRRKSRVREKVDKFSMIKAIKSLDRCHVAVLLLDGAEGVSDQDARICGYA 282

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYD------------------HLISSFTGEGLEELINK 357
             K    +    K DL     E+ +                    +S+ TGE + +L ++
Sbjct: 283 LEKGRGIVLAINKWDLVKGNVEKRNQLERGIERRLKFISFAPRINLSALTGERVMKLFSR 342

Query: 358 IKSILSNKFKKLPFSIPSHKRH 379
           I S+     +++   + +    
Sbjct: 343 IDSVYDQFSRRIGTPLVNRAIQ 364



 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L +   A+V D PG TRD L   +  EG  + + DT G  +  
Sbjct: 5   IAIVGRPNVGKSTLFNRLTRSKRALVDDRPGITRDRLHGTISHEGLQMTLVDTGGFEDLG 64

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
               ++G++ +    ++ AD I+ + +         +    +          +  K D  
Sbjct: 65  QDPLQKGVRAQVETAIQEADRIIFMVDGREGVLPGDDEMAHLLRRMQKRVFLVVNKIDGP 124

Query: 333 ST-------YTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                    Y   YD  + +S+  G G++ L+N +   LS        S
Sbjct: 125 EKEHLAGEFYQLGYDAVYTLSAAHGYGVKALLNDLVKGLSPSEDTGEDS 173


>gi|237709649|ref|ZP_04540130.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|265754281|ref|ZP_06089470.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229456285|gb|EEO62006.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263234990|gb|EEZ20545.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 396

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   + + G  N+GKSSL NAL  +D A+V+DIPGTT D ++  ++++G       DT G
Sbjct: 10  NRLHVALFGRRNSGKSSLINALTGQDTALVSDIPGTTTDTVSKAMEIQGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFIGTKSD 330
             +  ++ E   I RT   +E  D+ LLL E  + +E          KNI  I +  K+D
Sbjct: 70  FDDEGELGEMRII-RTLKAIERTDIALLLCEDEAHEEEKKWMKQLEEKNIPVILLLNKAD 128

Query: 331 LYSTYT----------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +                +   +IS+    G++++   I   L   F +   +
Sbjct: 129 IRKDIASTLLRIEKDCGQKPLVISAKERTGIKKIHQAILEKLPADFGQQTIT 180


>gi|323143788|ref|ZP_08078456.1| ribosome biogenesis GTPase Der [Succinatimonas hippei YIT 12066]
 gi|322416501|gb|EFY07167.1| ribosome biogenesis GTPase Der [Succinatimonas hippei YIT 12066]
          Length = 568

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 85/222 (38%), Gaps = 27/222 (12%)

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
           F           L++         +         K  ++G  N GKS+L N L  +D  +
Sbjct: 208 FDWYAFREKQRGLQHTDDEAEKAAEHTPFADLPIKFALVGKPNVGKSTLTNRLLGEDRVV 267

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLIL 303
           V D+PGTTRD + I L+ E     + DTAG+R+     + +EK  I +T   +E+ ++ +
Sbjct: 268 VCDMPGTTRDSIYIPLEREHKKYIVIDTAGVRKRRKVSEAIEKFSIVKTLKAIEDCNVAV 327

Query: 304 LLKEIN---SKKEISFP-----KNIDFIFIGTKSD-LYSTYTEEY--------------- 339
           L+ +     + +++S            +    K D L   Y ++                
Sbjct: 328 LVIDARENITDQDLSLLGFILDSGRSLVIAVNKWDGLSKEYKDDIRRELNLRLGFVDFAR 387

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            H IS+  G G+  + + I     +  ++   +  +      
Sbjct: 388 VHFISALHGTGVGNIFDSIDEAYESATRRNSSATLNRVLQAA 429



 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 20/173 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L K   A+V D PG TRD        +G    + DT GI +  
Sbjct: 4   VALVGCPNVGKSTLFNRLTKTRDALVADFPGLTRDRKYGRALFDGREYIVIDTGGIAKDA 63

Query: 282 DIVE---KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
           +       +  ++  L +E  DL+L + +  +          E           +  K D
Sbjct: 64  EQPSDLTSKMTEQALLAIEECDLVLFMVDARAGIMPGDYQVAEYIRKSGKKCAVVANKID 123

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                    +         H I++  G G++ LI  + + +  +   L   +P
Sbjct: 124 GLDPDIAGTEFYGLGLGEVHQIAAAHGRGVQILIEDVIAPVLREDGPLDSDLP 176


>gi|318042122|ref|ZP_07974078.1| GTP-binding protein Era-like protein [Synechococcus sp. CB0101]
          Length = 330

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 22/200 (11%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           G+  E  R+G+ + ++G  N GKS+L N L  + VAI + I  TTR+ L   L      +
Sbjct: 31  GQSPEGYRSGF-VALVGRPNVGKSTLLNQLVGEKVAITSPIAQTTRNRLRAILTTPEAQL 89

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNID 321
            + DT GI +   ++ +  ++     +   DL+LLL + +           E+       
Sbjct: 90  VLVDTPGIHKPHHLLGERLVQTARGAIGEVDLVLLLVDGSQPAGRGDGFIVELLSHARAP 149

Query: 322 FIFIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
                 K DL                  +   H +S+  G+G E L++ + + L      
Sbjct: 150 VHVALNKHDLVDPAQAIELEASYRELVPDWPLHPVSALNGDGTEALVSALSAALPEGPHL 209

Query: 369 LPFSIPSHKRHLYHLSQTVR 388
            P    S +     L++ +R
Sbjct: 210 YPPDAVSDQPEQLLLAELIR 229


>gi|300173424|ref|YP_003772590.1| GTP-binding protein EngA [Leuconostoc gasicomitatum LMG 18811]
 gi|299887803|emb|CBL91771.1| GTP-binding protein EngA [Leuconostoc gasicomitatum LMG 18811]
          Length = 437

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H       +      K  I+G  N GKSS+ NA+  +D  IV+ I GTTRD 
Sbjct: 154 DLLDEVVKHFPDEAAEQEDEGAIKFSIIGRPNVGKSSIVNAMLGEDRVIVSSIEGTTRDA 213

Query: 258 LTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK-- 311
           +    +  EG    + DTAG+R+   +    EK  + R    ++N+++IL++ +  +   
Sbjct: 214 IDSRFVTPEGDEFIMVDTAGMRKRGKVYENTEKYSVMRALKAIDNSNVILMVIDAEAGIR 273

Query: 312 ------KEISFPKNIDFIFIGTKSDLYST-----------YTEEYDH-------LISSFT 347
                    +       I +  K D                  E+          +S+ T
Sbjct: 274 EQDKHVAGFAHEAGRAMIIVVNKWDAVEKDDHTMKEFEDLIRSEFKFLDYAPITFVSAKT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
           G+ L+ L   +K + +N  K++  S
Sbjct: 334 GQRLDRLPQLVKDVDNNHRKRISSS 358



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 17/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + +AIV D PG TRD L    +   Y  ++ DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRMAGERIAIVEDQPGVTRDRLYAPAEWLNYEFRMIDTGGIELGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEI----SFPKNIDFIFIGTKSDLYS 333
                E   +  L ++ AD+I+++      + S  E+     +  +   +    K D   
Sbjct: 66  APFLAEIRAQVELAIDEADVIVMITSGREGVTSADEVVAKMLYKTDKPVVLAINKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
              + YD           +S   G GL +L++++     ++  +   
Sbjct: 126 MRQDIYDFYSLGLGDPFPVSGSHGLGLGDLLDEVVKHFPDEAAEQED 172


>gi|322434484|ref|YP_004216696.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX9]
 gi|321162211|gb|ADW67916.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX9]
          Length = 622

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 11/133 (8%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           GE      K+ I+G  N GKS+L NAL + D AIV+ I GTTRD +   ++ +G++ +  
Sbjct: 340 GEYESRETKVAIIGRPNVGKSTLLNALTETDRAIVSPIAGTTRDAVDEIVEKKGHIFRFV 399

Query: 273 DTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNID 321
           DTAGIR+        EK  +      +E AD+ LL+ +               +      
Sbjct: 400 DTAGIRKKGKTKMMAEKLSVIMARKHLEAADVSLLVIDAQEGVTNIDANIGGYAHESGRS 459

Query: 322 FIFIGTKSDLYST 334
            I +  K DL +T
Sbjct: 460 VIIVINKWDLVTT 472



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 71/161 (44%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           I + G  N GKS+LFN L     +IV D PG TRD +  +++ +    ++ DT G + + 
Sbjct: 142 IAVCGRPNVGKSTLFNRLTGSRRSIVGDEPGITRDRIYGEIEWQNVKARLVDTGGVVPDD 201

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           + ++  E  ++  + ++ AD I+++ +  ++          +             K D  
Sbjct: 202 EALIPSEIFRQAQVALQEADAIVMVVDGRTELASPDMELARLLMKGGKPTFLAVNKMDSE 261

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSN 364
           S Y    +            S+  G G+ +L++++ ++L  
Sbjct: 262 SMYAAAENFRRLGFKNVLPISAEHGSGIGDLLDEVFAVLPE 302


>gi|241662759|ref|YP_002981119.1| GTP-binding protein EngA [Ralstonia pickettii 12D]
 gi|240864786|gb|ACS62447.1| small GTP-binding protein [Ralstonia pickettii 12D]
          Length = 447

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 31/191 (16%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +  +   +G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G   
Sbjct: 171 AEAADAHDHGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPY 230

Query: 270 KISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI- 325
            + DTAG+R+     + +EK  + +T   + +A++++L+ +  ++++IS        FI 
Sbjct: 231 TLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLILD--AQQDISDQDAHIAGFIV 288

Query: 326 ---------GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKS 360
                      K D  + +  +                  H IS+    G+  L+  + +
Sbjct: 289 ESGRALVIGVNKWDGLTGHARDRIKHDMERKLQFLSFANVHYISAKERTGIGALMKSVDA 348

Query: 361 ILSNKFKKLPF 371
             +    KLP 
Sbjct: 349 AYAAAMVKLPT 359



 Score = 83.4 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V DIPG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADIPGLTRDRHYGEGRVGDRPFIAIDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + +  E  K+T   V  AD+++ + +
Sbjct: 65  KEGIVAEMAKQTRQAVVEADVVIFIVD 91


>gi|71065252|ref|YP_263979.1| GTP-binding protein EngA [Psychrobacter arcticus 273-4]
 gi|123649239|sp|Q4FTW3|DER_PSYA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|71038237|gb|AAZ18545.1| putative GTP-binding protein, HSR1-related [Psychrobacter arcticus
           273-4]
          Length = 473

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 27/172 (15%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G K+ I+G  N GKS+L N L  +D  +V D+PGTTRD + I    +G    + DTAG+R
Sbjct: 177 GLKLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIYIPYKRDGKDYVLIDTAGVR 236

Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGT 327
              + D+ VEK  + +T   +E++++ +++ + +     +++     +       +    
Sbjct: 237 RRGKIDEKVEKFSVIKTLQAIEDSNVTVIVIDAHEGIVDQDLHMIGYALDAGRALVVAIN 296

Query: 328 KSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILS 363
           K D  +   + Y                 H IS+  G G+  L   I     
Sbjct: 297 KWDGLTADQKNYIKIEMDRRFNFIPYVKVHQISALHGTGVGNLYPSILRAYQ 348



 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 19/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN   K   A+V D+ G TRD    D   E     + DT GI E D
Sbjct: 7   VALIGRPNVGKSTLFNQFTKSRQALVADLSGLTRDRQYGDATYEDKAFIVVDTGGIGEAD 66

Query: 282 DIV---EKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSD 330
           D     +    ++++  +  AD+I+ + +     I +  EI             +  K D
Sbjct: 67  DGRGDIDDYMSEQSYTAIHEADIIVFVVDARAGMIGADAEIGKFLHTLGKPVYVVANKVD 126

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            ++ +   E+        + +++  G G+  L+  + + + N+   + 
Sbjct: 127 GVHDSAPAEFYALGLGEPYPMAASHGRGVGNLLEVLTADMPNQENIIE 174


>gi|294660274|ref|NP_852940.2| putative GTPase EngA [Mycoplasma gallisepticum str. R(low)]
 gi|298286805|sp|Q7NBV2|DER_MYCGA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|284811930|gb|AAP56508.2| predicted GTPase EngA [Mycoplasma gallisepticum str. R(low)]
 gi|284930404|gb|ADC30343.1| predicted GTPase EngA [Mycoplasma gallisepticum str. R(high)]
          Length = 456

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 11/168 (6%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           FS         S E    I  L ++I     Q    +         I+G  N GKSSL N
Sbjct: 134 FSLGFGKPMIISAEHAIGIGDLLDEIIGLKDQFGNKKEQELVATFCIIGKPNVGKSSLLN 193

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFL 294
            L KK+  +V+DIPGTTRD +         L K+ DTAGIR    I   +EK  ++RT  
Sbjct: 194 QLLKKERVLVSDIPGTTRDAIDATFSYNKELYKVIDTAGIRRKGKIATRIEKFSVQRTQQ 253

Query: 295 EVENADLILLL----KEINSKKE----ISFPKNIDFIFIGTKSDLYST 334
            +  + +ILL+     +++ + E    + +  N+  I +  K DL   
Sbjct: 254 AISRSKMILLMLDGSVDLSEQDEVIGGLCYEANLPTIIVVNKWDLVKK 301



 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 19/174 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+LFN L K  +AIV D PG TRD +  D++      +I DT G+  
Sbjct: 2   LKVAIVGKPNVGKSTLFNRLIKNRIAIVDDTPGITRDRIFGDVEWLTKRFQIIDTGGLTT 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSD 330
             D+ ++   ++    ++ AD+IL +          +  + K +   KN   IF+  K +
Sbjct: 62  ESDVFQRAIEQQVQFAIDEADIILFVCSYKEGINADDHYAAKLLKKHKNKKIIFVLNKIE 121

Query: 331 --------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                   L S ++  +   +  S+    G+ +L+++I  +      K    + 
Sbjct: 122 NQNKDQLNLSSYFSLGFGKPMIISAEHAIGIGDLLDEIIGLKDQFGNKKEQELV 175


>gi|153872876|ref|ZP_02001641.1| Small GTP-binding protein domain [Beggiatoa sp. PS]
 gi|152070659|gb|EDN68360.1| Small GTP-binding protein domain [Beggiatoa sp. PS]
          Length = 515

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 27/179 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G K+ I+G  N GKS+L N +   +  I  D PGTTRD + I  + +G L  + DTAG+
Sbjct: 227 QGIKVAIIGRPNVGKSTLVNRMLGYERVITFDQPGTTRDSIFIPFERDGQLYTLIDTAGV 286

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
           R    +   +EK  + ++   +E  +++++L +              I        I   
Sbjct: 287 RRRARVSEKIEKFSVIKSLQAIETGNVVIMLLDGREGITDQDANLLGIVIDSGCALIIAV 346

Query: 327 TKSD-LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
            K D L  ++ E+                 H IS+  G  +  L   I ++  N  K++
Sbjct: 347 NKWDGLEKSHREQVRYHLSRKLQFLDFAKVHFISALHGSNVGHLFESINAVWKNANKQI 405



 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IVI+G  N GKS+LFNAL K   A+V D PG TRD       +      I DT G+   D
Sbjct: 5   IVIVGRPNVGKSTLFNALTKTRDALVADQPGLTRDRRIGRGCVGDSDYWIIDTGGLSTED 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKS---- 329
           D + +    +  L ++ AD +L L +         +EI+      N     +  K+    
Sbjct: 65  DAILERISHQARLAIKEADGVLFLVDGRGGLTGGDQEITQYLRRFNTPIFLVINKAEGLQ 124

Query: 330 -DLYST----YTEEYDHLISSFTGEGLEELINKIKSILSN 364
            DL S        E  H IS+   +G+ +L++ +  I+S 
Sbjct: 125 KDLVSAEFYQLGFENIHAISAVHRQGINDLMDAVLPIISQ 164


>gi|85716391|ref|ZP_01047363.1| GTP-binding protein EngA [Nitrobacter sp. Nb-311A]
 gi|85696748|gb|EAQ34634.1| GTP-binding protein EngA [Nitrobacter sp. Nb-311A]
          Length = 458

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 121/328 (36%), Gaps = 41/328 (12%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSG 152
            +     L     G  + R  E  +  +  A++L  +  +      T+            
Sbjct: 53  TVIDTAGLDEGPRGSLTARMQEQTETAIAAADALMFVFDARAGLTPTDRSFADFARRADK 112

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212
            +  +  +   +     +     L   +   V     + + +    L+  +     +   
Sbjct: 113 PVVLVANKSEGRHGDAGALESYALGLGDPIGVSAEHGEGMGDLYDALRAVMPEPAEEADA 172

Query: 213 GEIIRNG-------YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            + I +G        ++ I+G  NAGKS++ N L  +D  + +   GTTRD ++++LD  
Sbjct: 173 DDSIESGEDVSRRPIRVAIVGRPNAGKSTVINYLLNEDRLLTSPEAGTTRDSISVELDWH 232

Query: 266 GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322
           G   +I DTAG+R    I    EK  +  T   V  A++++L+ +  ++ E    +  D 
Sbjct: 233 GRDFRIFDTAGLRRRSRIEEKLEKLSVADTLRAVRFAEVVVLMMDAQNRFEEQDLRIADL 292

Query: 323 I--------FIGTKSDL-------YSTYTEEYDHL-----------ISSFTGEGLEELIN 356
           I            K DL        ++   + DH            +S  TGEG+  L+ 
Sbjct: 293 IEREGRALVIAVNKWDLMQGGSARIASLRNDADHWLPQVKGAPVVALSGLTGEGVGGLMT 352

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLS 384
            I++  +   +++P +  +        +
Sbjct: 353 AIQAAYAVWNRRVPTAALNRWFQQAIAA 380



 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 18/171 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I I+G  N GKS+LFN L  + +A+V D PG TRD       L      + DTAG+ E
Sbjct: 3   FTIAIIGRPNVGKSTLFNRLVGQRLALVDDEPGVTRDRREGQARLGDLDFTVIDTAGLDE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                      ++T   +  AD ++ + +  +          + +   +   + +  KS+
Sbjct: 63  GPRGSLTARMQEQTETAIAAADALMFVFDARAGLTPTDRSFADFARRADKPVVLVANKSE 122

Query: 331 --------LYS-TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   L S          +S+  GEG+ +L + +++++    ++    
Sbjct: 123 GRHGDAGALESYALGLGDPIGVSAEHGEGMGDLYDALRAVMPEPAEEADAD 173


>gi|154505900|ref|ZP_02042638.1| hypothetical protein RUMGNA_03442 [Ruminococcus gnavus ATCC 29149]
 gi|153793918|gb|EDN76338.1| hypothetical protein RUMGNA_03442 [Ruminococcus gnavus ATCC 29149]
          Length = 299

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 24/217 (11%)

Query: 216 IRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           +R+ +K   + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   +   
Sbjct: 1   MRDDFKSGFVTLIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFV 60

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIF 324
           DT GI +  + + +  +      +   D++L L E         K  I   K      I 
Sbjct: 61  DTPGIHKAKNKLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEKHIIEQLKRVKTPVIL 120

Query: 325 IGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +  K D             Y +EYD      +S+  G+  +EL+N I   L    +    
Sbjct: 121 VINKIDMVKREEVLLFIDAYRKEYDFAEIVPVSARNGDNTDELVNVILKYLPYGPQFYDE 180

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
              + +     +++ +R   +  L E+      +A +
Sbjct: 181 DTVTDQPERQIVAELIREKALHCLQEEIPHGIAVAID 217


>gi|299133685|ref|ZP_07026879.1| ribosome-associated GTPase EngA [Afipia sp. 1NLS2]
 gi|298591521|gb|EFI51722.1| ribosome-associated GTPase EngA [Afipia sp. 1NLS2]
          Length = 461

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 29/187 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ +LG  NAGKS+L N L  ++  + +   GTTRD + +D++ +G  +++ DTAG+R 
Sbjct: 190 IRVAVLGRPNAGKSTLINHLLGEERLLTSPEAGTTRDSIAVDVEWKGRKLRVFDTAGLRR 249

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
               DD +EK  +      V  A++++L+ +  ++ E    +            +    K
Sbjct: 250 RSRIDDKLEKLSVSDALRAVRFAEVVVLVVDAQNRFEEQDLRLADLVEREGRALVLAVNK 309

Query: 329 SDLYS-------TYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL            E  DH            IS   GEG++ LI  I+   +   K++P
Sbjct: 310 WDLVERAPSAIGKLRETADHLLPQVRGAPVVAISGLMGEGIDRLIGAIEKAYATWNKRIP 369

Query: 371 FSIPSHK 377
            S  +  
Sbjct: 370 TSALNRW 376



 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 18/162 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I I+G  N GKS+LFN L  + +A+V D PG TRD       L      I DTAG+  
Sbjct: 3   FTIAIIGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRREGLGRLGDLEFTIIDTAGLDS 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                      ++T   +  AD ++ + +  +          + +   N   + +  KS+
Sbjct: 63  GPRGSLTARMQEQTETAIAAADALMFVIDARAGLTPNDRAFADFARRANKPVLLLANKSE 122

Query: 331 -------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILS 363
                  +  +Y         IS+  GEGL +L + ++ ++ 
Sbjct: 123 GKQGEAGIAESYALGLGDPIGISAEHGEGLGDLYDALRELMP 164


>gi|241667168|ref|ZP_04754746.1| GTP-binding protein EngA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875720|ref|ZP_05248430.1| GTP-binding protein engA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841741|gb|EET20155.1| GTP-binding protein engA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 465

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 28/190 (14%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              +  E  R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G+
Sbjct: 172 QTQEHKEQQRHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGH 231

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP---- 317
              I DTAG+R    +    EK  + +T   ++++++++ + +     S +++S      
Sbjct: 232 KYTIVDTAGVRRRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDAREGISDQDLSLIHFAI 291

Query: 318 -KNIDFIFIGTKSDLYST---------------YTEEY--DHLISSFTGEGLEELINKIK 359
                 +    K D  +                + E+Y   H IS+  G  +  +   I 
Sbjct: 292 KNGRALVLAINKWDGMTEEDRNQVKQDLKRKLFFLEDYVDVHFISALHGTNVGHVFESID 351

Query: 360 SILSNKFKKL 369
           +  +   KK+
Sbjct: 352 TAYACANKKI 361



 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G +N GKS+LFN L     A+V D  G TRD        +     + DT GI +
Sbjct: 3   FLVAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLGYLVVDTGGISD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D   ++   K++ + ++ A+L+  + +  S
Sbjct: 63  QDAGFDEFMAKQSQMAIDEANLVFFVVDGRS 93


>gi|284040067|ref|YP_003389997.1| ribosome-associated GTPase EngA [Spirosoma linguale DSM 74]
 gi|283819360|gb|ADB41198.1| ribosome-associated GTPase EngA [Spirosoma linguale DSM 74]
          Length = 435

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 79/199 (39%), Gaps = 22/199 (11%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H     + +      +I ILG  N GKSS  N L  ++ +IVT+I GTTRD 
Sbjct: 154 DLLDEVVKHFQTPGIEDPDAGIPRIAILGRPNVGKSSFLNVLTGQERSIVTNIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +       G    ++DTAGIR    +    E   + R+   +E++D+ ++L +     E 
Sbjct: 214 INTRYKAYGKDFILTDTAGIRRKARVDSNIEFYSVLRSIKAMEDSDVCIILLDATRGLEA 273

Query: 315 --------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                   +       + +  K D         D +               I+ ++   +
Sbjct: 274 QDLNIIGQAIKAKKGVVIMVNKWDAIEKDHRTADVMR-----------KEMIQRMMPIDY 322

Query: 367 KKLPFSIPSHKRHLYHLSQ 385
             + F+    K+ ++ + +
Sbjct: 323 VPIIFASVHEKQRIFQVME 341



 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 69/173 (39%), Gaps = 18/173 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + I+G  N GKS+LFN L ++  AI+ +  G TRD      +       + DT G +  +
Sbjct: 5   VAIVGRPNVGKSTLFNRLTEQRQAIMDNQSGVTRDRHYGTAEWNDKYFTVIDTGGYVVGS 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           +D+ E+   ++  + ++ + L+L + +  +          ++          +  K++  
Sbjct: 65  EDVFEESIREQVEMAIQESTLLLFVVDTQTGITGLDEDFADVLRRSKKPVYVVANKAETA 124

Query: 333 S---------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                            + ISS TG G  +L++++         + P +    
Sbjct: 125 ERAHTAAEFYALGLGDPYPISSQTGTGTGDLLDEVVKHFQTPGIEDPDAGIPR 177


>gi|331703406|ref|YP_004400093.1| GTP binding protein EngA [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801961|emb|CBW54115.1| GTP binding protein EngA, probably truncated inC terminal
           [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 435

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 14/154 (9%)

Query: 198 FLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + + S+I   K  EII++   KI I+G  N GKSSL N+L  ++  IV++I GTT D
Sbjct: 154 DLLDKVISYI--SKNEEIIKDDSTKIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLD 211

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            + I          + DTAGIR+       +EK    R+   + +AD++LL+ +      
Sbjct: 212 AVDISFSYNKKKYTVIDTAGIRKKSKLGQTIEKYSYLRSLSAISDADIVLLMIDATKPIT 271

Query: 312 ------KEISFPKNIDFIFIGTKSDLYSTYTEEY 339
                   + + +    I +  K DL      E 
Sbjct: 272 DQDTNIGGLIYDEKKPVIIVVNKWDLIKNKETEI 305



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN + K+  +IV D PG TRD +    +       + DT GI  +D
Sbjct: 6   VAIVGKPNVGKSSLFNRIIKEKKSIVDDKPGVTRDRIYSSAEWLTREFILIDTGGISLSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTKSDLYS 333
            +   E   +T + +E AD+I+ + +      N  K I+          I    K D  +
Sbjct: 66  QLFSNEIKLQTQIAIEQADVIIFVVDFLNNLDNDDKMIAKILHKSKKPVILAVNKYDKKT 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
                Y  +         ISS  G G+ +L++K+ S +
Sbjct: 126 IDDHNYQFMSLGFSDLYFISSTHGIGIGDLLDKVISYI 163


>gi|89255825|ref|YP_513187.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314316|ref|YP_763039.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156501805|ref|YP_001427870.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009589|ref|ZP_02274520.1| GTP-binding protein [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367186|ref|ZP_04983217.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257]
 gi|254367192|ref|ZP_04983222.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257]
 gi|254368682|ref|ZP_04984696.1| hypothetical protein FTAG_01704 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953028|ref|ZP_06557649.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313760|ref|ZP_06804335.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica
           URFT1]
 gi|122325651|sp|Q0BND2|DER_FRATO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|122501151|sp|Q2A515|DER_FRATH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166198715|sp|A7NAB1|DER_FRATF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|89143656|emb|CAJ78854.1| GTP-binding protein [Francisella tularensis subsp. holarctica LVS]
 gi|115129215|gb|ABI82402.1| GTP-binding protein [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253007|gb|EBA52101.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257]
 gi|134253012|gb|EBA52106.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257]
 gi|156252408|gb|ABU60914.1| GTP-binding protein [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121597|gb|EDO65774.1| hypothetical protein FTAG_01704 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 465

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              +  E  R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G 
Sbjct: 172 QTQEHKEQQRHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQ 231

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP---- 317
              I DTAG+R+   +    EK  + +T   ++++++++ + +     S +++S      
Sbjct: 232 KYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGISDQDLSLIHFAI 291

Query: 318 -KNIDFIFIGTKSD 330
                 +    K D
Sbjct: 292 KNGRALVLAVNKWD 305



 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G +N GKS+LFN L     A+V D  G TRD        +     + DT GI +
Sbjct: 3   FLVAIVGRANVGKSTLFNVLTNSHDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGISD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D   ++   K++ + ++ A+L+  + +  S
Sbjct: 63  KDVGFDEFMAKQSQIAIDEANLVFFVVDGRS 93


>gi|225867922|ref|YP_002743870.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus]
 gi|225701198|emb|CAW98121.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus]
          Length = 446

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 72/180 (40%), Gaps = 17/180 (9%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
               I     + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       +
Sbjct: 6   RKRRIMVLPTVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRQFSL 65

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFI 323
            DT GI + D    ++   +  + ++ AD+I+ +      +    E    + +  N   I
Sbjct: 66  IDTGGIDDVDAPFMEQIKHQAHIAMDEADVIVFVVSGKEGVTDADEYVSKLLYRTNKPVI 125

Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            +  K D      + YD           +SS  G G  ++++ I   L  +       + 
Sbjct: 126 LVVNKVDNPEMRNDIYDFYSLGLGDPFPVSSVHGIGTGDVLDAIIDNLPVEEIVENDDVI 185



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + I    + EI+ N    +  ++G  N GKSSL NA+  ++  I + + GTTRD +  
Sbjct: 166 LDAIIDNLPVEEIVENDDVIRFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDT 225

Query: 261 DLDLE-GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
               E G    + DTAG+R++  +    EK  + R    ++ +D++L++  IN+++ I  
Sbjct: 226 SFTDESGQAYTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGIRD 283

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       I +  K D                       T      +S+ T 
Sbjct: 284 YDKRIAGFAHEAGKGMIIVVNKWDTIEKDNHTVARWEADIRDQFQFLTYAPIIFVSAVTK 343

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L  L   IK I  ++ +++  +I +
Sbjct: 344 QRLNRLPELIKRISDSQSQRISSAILN 370


>gi|237725197|ref|ZP_04555678.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229436463|gb|EEO46540.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 396

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   + + G  N+GKSSL NAL  +D A+V+DIPGTT D ++  ++++G       DT G
Sbjct: 10  NRLHVALFGRRNSGKSSLINALTGQDTALVSDIPGTTTDTVSKAMEIQGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFIGTKSD 330
             +  ++ E   I RT   +E  D+ LLL E  + +E          KNI  I +  K+D
Sbjct: 70  FDDEGELGEMRII-RTLKAIEQTDIALLLCEDEAHEEEKKWMKQLEEKNIPVILLLNKAD 128

Query: 331 LYSTYT----------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +                +   +IS+    G++++   I   L   F +   +
Sbjct: 129 IRKDIASTLLRIEKDCGQKPLVISAKERTGIKKIHQAILEKLPADFGQQTIT 180


>gi|291320725|ref|YP_003515990.1| GTP binding protein EngA [Mycoplasma agalactiae]
 gi|290753061|emb|CBH41037.1| GTP binding protein engA [Mycoplasma agalactiae]
          Length = 436

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 32/195 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
           +K+ I+G  N+GKSSL NA+  ++ +IV+DI GTTRD +   ++L G+ ++I DTAGI  
Sbjct: 172 FKLSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDSVKSVVELRGHKIEIIDTAGITR 231

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
             + DDIVE   +KR    ++ +DL ++L +   +           +   N   I    K
Sbjct: 232 KSKIDDIVEHLALKRAMSSLDESDLSIVLIDSTRELAHFDARIIGYALENNKPIIICVNK 291

Query: 329 SDLYSTYTEEYDHLI------------------SSFTGEGLEELIN---KIKSILSNKFK 367
            DL +   +  +                     S+ TG  +++LI+   K+K  L  + K
Sbjct: 292 WDLINKTQDTMNEYRKKLKNRFHFVPWVPVEFISAKTGSRIDKLIDIVLKVKENLEREIK 351

Query: 368 KLPFSIPSHKRHLYH 382
               +    +  L  
Sbjct: 352 PSVLTNLIRESQLIQ 366



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 15/164 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  K  +I  D PG TRD L       G  + + DT GI+   
Sbjct: 6   IAIIGKPNVGKSTLFNRLVGKRSSITFDRPGVTRDRLYESFTWNGKEINVIDTGGIQIEK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
              + + + +  + +E A++++ + +  +           +        I +  K D  S
Sbjct: 66  KDFQDQILIQAKIAIEEANVVIFIVDGQAAITSDDKMIYSMLQKSGKPIIVVANKLDNIS 125

Query: 334 TYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            +         ++   IS+  G G+ +++++    L+     + 
Sbjct: 126 KFDYGWYSLGADHVFRISALHGNGIGDVLDQCLKYLNFDTDNVS 169


>gi|225871164|ref|YP_002747111.1| GTP-binding protein EngA [Streptococcus equi subsp. equi 4047]
 gi|225700568|emb|CAW95070.1| GTP-binding protein EngA [Streptococcus equi subsp. equi 4047]
          Length = 446

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 16  VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRQFSLIDTGGIDDVD 75

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      +    E    + +  N   I +  K D   
Sbjct: 76  APFMEQIKHQAHIAMDEADVIVFVVSGKEGVTDADEYVSKLLYRTNKPVILVVNKVDNPE 135

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  +       + 
Sbjct: 136 MRNDIYDFYSLGLGDSFPVSSVHGIGTGDVLDAIIDNLPIEEPVENDDVI 185



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + I    + E + N    +  ++G  N GKSSL NA+  ++  I + + GTTRD +  
Sbjct: 166 LDAIIDNLPIEEPVENDDVIRFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDT 225

Query: 261 DLDLE-GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
               E G    + DTAG+R++  +    EK  + R    ++ +D++L++  IN+++ I  
Sbjct: 226 SFTDESGQAYTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGIRD 283

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       I +  K D                       T      +S+ T 
Sbjct: 284 YDKRIAGFAHEAGKGMIIVVNKWDTIEKDNHTVARWEADIRDQFQFLTYAPIIFVSAVTK 343

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L  L   IK I  ++ +++  +I +
Sbjct: 344 QRLNRLPELIKRISDSQSQRISSAILN 370


>gi|187928156|ref|YP_001898643.1| GTP-binding protein EngA [Ralstonia pickettii 12J]
 gi|238691801|sp|B2U9V3|DER_RALPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|187725046|gb|ACD26211.1| small GTP-binding protein [Ralstonia pickettii 12J]
          Length = 447

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 31/191 (16%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +  +   +G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G   
Sbjct: 171 AEAADAHDHGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPY 230

Query: 270 KISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI- 325
            + DTAG+R+     + +EK  + +T   + +A++++L+ +  ++++IS        FI 
Sbjct: 231 TLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLILD--AQQDISDQDAHIAGFIV 288

Query: 326 ---------GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKS 360
                      K D  + +  +                  H IS+    G+  L+  + +
Sbjct: 289 ESGRALVIGVNKWDGLTGHARDRIKHDMERKLQFLSFANVHYISAKERTGIGALMKSVDA 348

Query: 361 ILSNKFKKLPF 371
             +    KLP 
Sbjct: 349 AYAAAMVKLPT 359



 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V DIPG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADIPGLTRDRHYGEGRVGDRPFIAIDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + +  E  K+T   V  AD+++ + +
Sbjct: 65  KEGIVAEMAKQTRQAVVEADVVIFIVD 91


>gi|254473321|ref|ZP_05086718.1| GTP-binding protein EngA [Pseudovibrio sp. JE062]
 gi|211957437|gb|EEA92640.1| GTP-binding protein EngA [Pseudovibrio sp. JE062]
          Length = 468

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 18/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD  + D  L     +I DTAG+ E +
Sbjct: 5   VAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRSGDARLGDLRFRIVDTAGLEEAE 64

Query: 282 DIV-EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
               E     +T   +  AD  L L +  +           +    +   I    K++  
Sbjct: 65  ASSLEGRMRAQTEEAIREADACLFLIDARAGLMPLDEHFANLLRRNSTPVILCANKAEGK 124

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFK 367
                LY  +T  +     +S+  GEGL EL + ++ I+    +
Sbjct: 125 AGDVGLYDAFTLGFGDPIALSAEHGEGLSELYDMLRPIVDEADE 168



 Score = 94.9 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 100/265 (37%), Gaps = 52/265 (19%)

Query: 145 LSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE---EEDVQNFSSKEVLNDILFLKN 201
           +++    GE  S     +  +      +EA  +F+E   + DV++    E +        
Sbjct: 142 IALSAEHGEGLSELYDMLRPIVDEADELEASQEFTEARTDVDVEDEEIDEPVGTRER--- 198

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
                              ++ I+G  NAGKS+L N +  ++  +     G TRD ++++
Sbjct: 199 -----------------PLRMAIVGRPNAGKSTLINQMLGEERLLTGPEAGITRDSISVE 241

Query: 262 LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
            + + + VK+ DTAGIR+   +    EK  +      V+ A+++++  +     E    +
Sbjct: 242 WEWQDHHVKVFDTAGIRKKARVQEKLEKLSVADALRAVKFAEVVVVTLDATISFEKQDLQ 301

Query: 319 NIDFI--------FIGTKSDLYSTYTEEYDHL------------------ISSFTGEGLE 352
            ID              K DL     + + H+                  +S   G+GL+
Sbjct: 302 IIDLCAREGRAIVIAVNKWDLIEDREDAWGHIKDSQERYLNQLRGVEIVTMSGINGQGLD 361

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK 377
           +L+  +        K++  S  +  
Sbjct: 362 KLMQAVFRAYEMWNKRIGTSSLNRW 386


>gi|195978761|ref|YP_002124005.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975466|gb|ACG62992.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 446

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 16  VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRQFSLIDTGGIDDVD 75

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + ++ AD+I+ +      +    E    + +  N   I +  K D   
Sbjct: 76  APFMEQIKHQAHIAMDEADVIVFVVSGKEGVTDADEYVSKLLYRTNKPVILVVNKVDNPE 135

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  +       + 
Sbjct: 136 MRNDIYDFYSLGLGDPFPVSSVHGIGTGDVLDAIIDNLPVEEIVENDDVI 185



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 87/207 (42%), Gaps = 36/207 (17%)

Query: 203 ISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + I    + EI+ N    +  ++G  N GKSSL NA+  ++  I + + GTTRD +  
Sbjct: 166 LDAIIDNLPVEEIVENDDVIRFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDT 225

Query: 261 DLDLE-GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
               E G    + DTAG+R++  +    EK  + R    ++ +D++L++  IN+++ I  
Sbjct: 226 SFTDESGQAYTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGIRD 283

Query: 315 --------SFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +       I +  K D                       T      +S+ T 
Sbjct: 284 YDKRIAGFAHEAGKGMIIVVNKWDTIEKDNHTVARWEADIRDQFQFLTYAPIIFVSAVTK 343

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + L  L   IK I  ++ +++  ++ +
Sbjct: 344 QRLNRLPELIKRISDSQSQRISSAVLN 370


>gi|188590271|ref|YP_001920268.1| GTP-binding protein Era [Clostridium botulinum E3 str. Alaska E43]
 gi|251778596|ref|ZP_04821516.1| GTP-binding protein Era [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|226741197|sp|B2V2K0|ERA_CLOBA RecName: Full=GTPase Era
 gi|188500552|gb|ACD53688.1| GTP-binding protein Era [Clostridium botulinum E3 str. Alaska E43]
 gi|243082911|gb|EES48801.1| GTP-binding protein Era [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 295

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 88/214 (41%), Gaps = 25/214 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + I+G  N GKS+L N +  + ++IV++ P TTR+ +   L  + Y +   DT G
Sbjct: 3   KSGF-VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGDDYQIVFVDTPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
           I +    + +  +        + DL+L L   + +         E    K      +  K
Sbjct: 62  IHKPKHKLGEYMVNSAKDSTNDVDLVLFLTNPDEEIGKGDKFILESLKDKKCPVYLVLNK 121

Query: 329 SD---------LYSTYTEEYDHLIS----SFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D             Y+ E++        +  G+ ++ L++ +K+ L    K  P  + +
Sbjct: 122 IDESTPERVAKSLEMYSSEFNFKEIVPIAAIKGKNVDTLVDLMKTELPEGPKYYPEDMIT 181

Query: 376 HKRHLYHLSQTVRYLEMASLNE---KDCGLDIIA 406
                + +S+ VR   +  L +       +DII 
Sbjct: 182 DVPERFVVSEIVREKALRCLRDEVPHGIAVDIIQ 215


>gi|169827483|ref|YP_001697641.1| GTP-binding protein [Lysinibacillus sphaericus C3-41]
 gi|168991971|gb|ACA39511.1| GTP-binding protein [Lysinibacillus sphaericus C3-41]
          Length = 211

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSD--- 330
           +   ++  ++  + +E AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLEQIRQQAEIAIEEADVIIFMTNGREGVTAADEQVAKILYKTKKPVVLAVNKIDNPD 125

Query: 331 ----LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKK 368
               +Y  Y   +      S   G GL +L+++       + ++
Sbjct: 126 MREMIYDFYALGFGEPWPISGSHGLGLGDLLDECAKHFPKEDEE 169



 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I  +T+    L++  +            + +    +     L F 
Sbjct: 91  NGREGVTAADEQVAKILYKTKKPVVLAVNKIDNP------DMREMIYDFYA-----LGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E        S      +  L ++ + H  +    +   +  K  ++G  N GKSSL NA 
Sbjct: 140 E----PWPISGSHGLGLGDLLDECAKHFPKEDEEQYGDDVIKFSLIGRPNVGKSSLVNAF 195

Query: 240 AKKDVAIVTDIPG 252
             +D  IV++I G
Sbjct: 196 LGQDRVIVSNIAG 208


>gi|221066038|ref|ZP_03542143.1| small GTP-binding protein [Comamonas testosteroni KF-1]
 gi|220711061|gb|EED66429.1| small GTP-binding protein [Comamonas testosteroni KF-1]
          Length = 446

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 27/187 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +   ++ + G  NAGKS+L N    ++  +  D+PGTTRD +T+  +  G   ++ DTAG
Sbjct: 178 QKPVRLAVAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAITVPFERNGQKFELIDTAG 237

Query: 277 IRETD---DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFI 325
           +R      + +EK  + +T   +E A+++LLL +      +    I+          +  
Sbjct: 238 LRRKGKVFEAIEKFSVVKTLQAIEGANVVLLLIDATQGVTDQDAHIAGYILESGRSVVLA 297

Query: 326 GTKSDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    Y  +                  H IS+   +GLE L   I         K+
Sbjct: 298 INKWDAVDDYQRQMLERSIETRLSFLKFAPLHFISAQKRQGLEPLWKSIIQAHRAATCKM 357

Query: 370 PFSIPSH 376
           P  + + 
Sbjct: 358 PTPVLTR 364



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 80/215 (37%), Gaps = 23/215 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD          +   + DT G   + 
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDLY 332
              + KE  K+T   V  AD+++ + +  +       EI           I +  K++  
Sbjct: 65  SRGIFKEMAKQTQQAVAEADVVIFVLDARAGLSGQDHEIGNYLRRLGKPTILVANKAEGM 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
               +  +            S+  G+G+  L++    +L+    +        ++ +   
Sbjct: 125 KDGAQLSEFYELGLGEVVPVSAAHGQGVRSLVDAALGLLNLPEPEEEAFGEEDQKPVRLA 184

Query: 384 SQTVRYLEMASLNEKDCGLD-IIAENL----RLAS 413
                    ++L     G + ++A ++    R A 
Sbjct: 185 VAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAI 219


>gi|15889576|ref|NP_355257.1| GTP-binding protein EngA [Agrobacterium tumefaciens str. C58]
 gi|26006719|sp|Q8UD28|DER_AGRT5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|15157462|gb|AAK88042.1| GTP-binding protein [Agrobacterium tumefaciens str. C58]
          Length = 476

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 18/171 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L      I DTAG+ +
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLIDLRFTIIDTAGLEQ 62

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD 330
           +  + ++     +T   ++ AD+ L + +  +          E+   +    + +  KS+
Sbjct: 63  SGPETLQGRMWAQTEAAIDEADVTLFVIDAKAGLTPADETLGEMLRRRGKPVVLVANKSE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              +    YD           +S+  G+G+ +L + I   +       P  
Sbjct: 123 ARGSDAGFYDAFTLGLGEPCPVSAEHGQGMIDLRDAIVEAIGEDMAFPPDV 173



 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 67/185 (36%), Gaps = 20/185 (10%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
              D +           D +   DV    +  VL        +           + +R  
Sbjct: 154 DLRDAIVEAIGE-----DMAFPPDVDEAETDIVLPRTEPGSEEEEDEEPVYDETKPLR-- 206

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R 
Sbjct: 207 --VAIIGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRR 264

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +  +   +  A+ ++++ +     E        +   +    +    K
Sbjct: 265 KAKVTEKLEKLSVADSLRSIRFAETVVIVFDSTIPFEKQDLQLVDLVIREGRAAVLAFNK 324

Query: 329 SDLYS 333
            DL  
Sbjct: 325 WDLVE 329


>gi|134301774|ref|YP_001121742.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|166198717|sp|A4IXH0|DER_FRATW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|134049551|gb|ABO46622.1| GTP-binding protein [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 465

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              +  E  R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G 
Sbjct: 172 QTQEHKEQQRHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQ 231

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP---- 317
              I DTAG+R+   +    EK  + +T   ++++++++ + +     S +++S      
Sbjct: 232 KYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGISDQDLSLIHFAI 291

Query: 318 -KNIDFIFIGTKSD 330
                 +    K D
Sbjct: 292 KNGRALVLAVNKWD 305



 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G +N GKS+LFN L     A+V D  G TRD        +     + DT GI +
Sbjct: 3   FLVAIVGRANVGKSTLFNVLTNSHDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGISD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D   ++   K++ + ++ A+L+  + +  S
Sbjct: 63  KDVGFDEFMAKQSQIAIDEANLVFFVVDGRS 93


>gi|313678873|ref|YP_004056613.1| ribosome-associated GTPase EngA [Mycoplasma bovis PG45]
 gi|312950564|gb|ADR25159.1| ribosome-associated GTPase EngA [Mycoplasma bovis PG45]
          Length = 436

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 32/195 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
           +K+ I+G  N+GKSSL NA+  ++ +IV+DI GTTRD +   ++L G+ ++I DTAGI  
Sbjct: 172 FKLSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDSVKSVVELRGHKIEIIDTAGITK 231

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
             + DD VE   +KR    ++ +DL ++L +   +           +   N   I    K
Sbjct: 232 KSKIDDTVEHLALKRAMSSLDESDLSIVLIDSTRELAHFDARIIGYALENNKPIIICVNK 291

Query: 329 SDLYSTYTEEYDHLI------------------SSFTGEGLEELIN---KIKSILSNKFK 367
            DL +   +  +                     S+ TG  +++LI+   K+K  L  + K
Sbjct: 292 WDLINKTQDTMNEYRKKLKNRFHFVPWVPVEFISAKTGARIDKLIDIVLKVKENLEREIK 351

Query: 368 KLPFSIPSHKRHLYH 382
               +    +  L  
Sbjct: 352 PSVLTNLIRESQLIQ 366



 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 15/164 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  K  +I  D PG TRD L       G  + + DT GI+   
Sbjct: 6   IAIIGKPNVGKSTLFNRLVGKRSSITFDRPGVTRDRLYESFMWNGKEINVIDTGGIQIEK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
              + + + +  + ++ A++++ + +  S           +        I +  K D  S
Sbjct: 66  KDFQDQILIQAKIAIQEANVVIFIVDGQSSITSDDKMIYSMLQKSGKPIIVVANKLDNIS 125

Query: 334 TYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            +         ++   IS+  G G+ +++++    L+     + 
Sbjct: 126 KFDYGWYSLGADHVFRISALHGNGIGDVLDQCLKYLNFDTDNVS 169


>gi|309782317|ref|ZP_07677044.1| ribosome-associated GTPase EngA [Ralstonia sp. 5_7_47FAA]
 gi|308918935|gb|EFP64605.1| ribosome-associated GTPase EngA [Ralstonia sp. 5_7_47FAA]
          Length = 376

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 31/191 (16%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +  +   +G +I I+G  N GKS+L NAL  ++  I  D+PGTTRD + +D +  G   
Sbjct: 100 AEAADAHDHGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPY 159

Query: 270 KISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI- 325
            + DTAG+R+     + +EK  + +T   + +A++++L+ +  ++++IS        FI 
Sbjct: 160 TLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLILD--AQQDISDQDAHIAGFIV 217

Query: 326 ---------GTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKS 360
                      K D  + +  +                  H IS+    G+  L+  + +
Sbjct: 218 ESGRALVIGVNKWDGLTGHARDRIKHDMERKLQFLSFANVHYISAKERTGIGALMKSVDA 277

Query: 361 ILSNKFKKLPF 371
             +    KLP 
Sbjct: 278 AYAAAMVKLPT 288


>gi|167626610|ref|YP_001677110.1| GTP-binding protein EngA [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189037148|sp|B0TZQ0|DER_FRAP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|167596611|gb|ABZ86609.1| GTP-binding protein [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 465

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 78/190 (41%), Gaps = 28/190 (14%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              +  E  R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G+
Sbjct: 172 QTQEHKEQQRHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGH 231

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP---- 317
              I DTAG+R    +    EK  + +T   ++++++++ + +     S +++S      
Sbjct: 232 KYTIVDTAGVRRRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDAREGISDQDLSLIHFAI 291

Query: 318 -KNIDFIFIGTKSDLYSTYTEEY-----------------DHLISSFTGEGLEELINKIK 359
                 +    K D  +                        H IS+  G  +  +   I 
Sbjct: 292 KNGRALVLAINKWDGMTEEDRNLVKQDLKRKLFFLEDYVDVHFISALHGTNVGHVFESID 351

Query: 360 SILSNKFKKL 369
           +  +   KK+
Sbjct: 352 TAYACANKKI 361



 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G +N GKS+LFN L     A+V D  G TRD        +     + DT GI +
Sbjct: 3   FLVAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLGYLVVDTGGISD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D   ++   K++ + ++ A+L+  + +  S
Sbjct: 63  QDAGFDEFMAKQSQMAIDEANLVFFVVDGRS 93


>gi|56708364|ref|YP_170260.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670834|ref|YP_667391.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457492|ref|ZP_03665965.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370986|ref|ZP_04986989.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875187|ref|ZP_05247897.1| GTP-binding protein engA [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|81820765|sp|Q5NFD2|DER_FRATT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123169321|sp|Q14GT5|DER_FRAT1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|56604856|emb|CAG45939.1| GTP-binding protein [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110321167|emb|CAL09322.1| GTP-binding protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151569227|gb|EDN34881.1| hypothetical protein FTBG_01608 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841186|gb|EET19622.1| GTP-binding protein engA [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159981|gb|ADA79372.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 465

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              +  E  R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G 
Sbjct: 172 QTQEHKEQQRHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQ 231

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP---- 317
              I DTAG+R+   +    EK  + +T   ++++++++ + +     S +++S      
Sbjct: 232 KYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGISDQDLSLIHFAI 291

Query: 318 -KNIDFIFIGTKSD 330
                 +    K D
Sbjct: 292 KNGRALVLAVNKWD 305



 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G +N GKS+LFN L     A+V D  G TRD        +     + DT GI +
Sbjct: 3   FLVAIVGRANVGKSTLFNVLTNSYDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGISD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D   ++   K++ + ++ A+L+  + +  S
Sbjct: 63  KDVGFDEFMAKQSQIAIDEANLVFFVVDGRS 93


>gi|187931320|ref|YP_001891304.1| GTP-binding protein EngA [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|238691534|sp|B2SF94|DER_FRATM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|187712229|gb|ACD30526.1| GTP-binding protein [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 465

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              +  E  R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G 
Sbjct: 172 QTQEHKEQQRHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQ 231

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP---- 317
              I DTAG+R+   +    EK  + +T   ++++++++ + +     S +++S      
Sbjct: 232 KYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGISDQDLSLIHFAI 291

Query: 318 -KNIDFIFIGTKSD 330
                 +    K D
Sbjct: 292 KNGRALVLAVNKWD 305



 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G +N GKS+LFN L     A+V D  G TRD        +     + DT GI +
Sbjct: 3   FLVAIVGRANVGKSTLFNVLTNSHDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGISD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D   ++   K++ + ++ A+L+  + +  S
Sbjct: 63  KDVGFDEFMAKQSQIAIDEANLVFFVVDGRS 93


>gi|254373886|ref|ZP_04989368.1| hypothetical protein FTDG_00040 [Francisella novicida GA99-3548]
 gi|151571606|gb|EDN37260.1| hypothetical protein FTDG_00040 [Francisella novicida GA99-3548]
          Length = 465

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              +  E  R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G 
Sbjct: 172 QTQEHKEQQRHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQ 231

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP---- 317
              I DTAG+R+   +    EK  + +T   ++++++++ + +     S +++S      
Sbjct: 232 KYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGISDQDLSLIHFAI 291

Query: 318 -KNIDFIFIGTKSD 330
                 +    K D
Sbjct: 292 KNGRALVLAVNKWD 305



 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G +N GKS+LFN L     A+V D  G TRD        +     + DT GI +
Sbjct: 3   FLVAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGISD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D   ++   K++ + ++ A+L+  + +  S
Sbjct: 63  KDVGFDEFMAKQSQIAIDEANLVFFVVDGRS 93


>gi|118497053|ref|YP_898103.1| GTP-binding protein EngA [Francisella tularensis subsp. novicida
           U112]
 gi|194324288|ref|ZP_03058062.1| GTPase of unknown function family protein, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|166198716|sp|A0Q534|DER_FRATN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|118422959|gb|ABK89349.1| GTP-binding protein [Francisella novicida U112]
 gi|194321735|gb|EDX19219.1| GTPase of unknown function family protein, putative [Francisella
           tularensis subsp. novicida FTE]
          Length = 465

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              +  E  R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G 
Sbjct: 172 QTQEHKEQQRHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQ 231

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP---- 317
              I DTAG+R+   +    EK  + +T   ++++++++ + +     S +++S      
Sbjct: 232 KYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGISDQDLSLIHFAI 291

Query: 318 -KNIDFIFIGTKSD 330
                 +    K D
Sbjct: 292 KNGRALVLAVNKWD 305



 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G +N GKS+LFN L     A+V D  G TRD        +     + DT GI +
Sbjct: 3   FLVAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGISD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D   ++   K++ + ++ A+L+  + +  S
Sbjct: 63  KDVGFDEFMAKQSQIAIDEANLVFFVVDGRS 93


>gi|54113771|gb|AAV29519.1| NT02FT0401 [synthetic construct]
          Length = 465

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              +  E  R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G 
Sbjct: 172 QTQEHKEQQRHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQ 231

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP---- 317
              I DTAG+R+   +    EK  + +T   ++++++++ + +     S +++S      
Sbjct: 232 KYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGISDQDLSLIHFAI 291

Query: 318 -KNIDFIFIGTKSD 330
                 +    K D
Sbjct: 292 KNGRALVLAVNKWD 305



 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G +N GKS+LFN L     A+V D  G TRD        +     + DT GI +
Sbjct: 3   VLVAIVGRANVGKSTLFNVLTNSYDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGISD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D   ++   K++ + ++ A+L+  + +  S
Sbjct: 63  KDVGFDEFMAKQSQIAIDEANLVFFVVDGRS 93


>gi|187934969|ref|YP_001885107.1| GTP-binding protein Era [Clostridium botulinum B str. Eklund 17B]
 gi|226741198|sp|B2TMB9|ERA_CLOBB RecName: Full=GTPase Era
 gi|187723122|gb|ACD24343.1| GTP-binding protein Era [Clostridium botulinum B str. Eklund 17B]
          Length = 295

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 88/214 (41%), Gaps = 25/214 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + I+G  N GKS+L N +  + ++IV++ P TTR+ +   L  E Y +   DT G
Sbjct: 3   KSGF-VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGEDYQIVFVDTPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
           I +    + +  +        + DL+L L   + +         E    K      +  K
Sbjct: 62  IHKPKHKLGEYMVNSAKDSTNDVDLVLFLTNPDEEIGKGDKFILESLKDKKCPVYLVLNK 121

Query: 329 SD---------LYSTYTEEYDHLIS----SFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D             Y+ E++        +  G+ ++ L++ +K+ L    K  P  + +
Sbjct: 122 IDESTPERVAKSLEMYSSEFNFKEIVPIAAIKGKNVDTLVDLMKTELPEGPKYYPEDMIT 181

Query: 376 HKRHLYHLSQTVRYLEMASLNE---KDCGLDIIA 406
                + +S+ VR   +  L +       +DII 
Sbjct: 182 DVPERFVVSEIVREKALRCLRDEVPHGIAVDIIQ 215


>gi|121997392|ref|YP_001002179.1| GTP-binding protein EngA [Halorhodospira halophila SL1]
 gi|166198720|sp|A1WUL5|DER_HALHL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|121588797|gb|ABM61377.1| small GTP-binding protein [Halorhodospira halophila SL1]
          Length = 472

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 80/194 (41%), Gaps = 30/194 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            L + + + +   +   +  +G     + ++G  N GKS+L N L  ++  +V D PGTT
Sbjct: 153 ELLDAVFALLPPAEPDAVGSDGPGGIPVAMIGRPNVGKSTLVNRLLGEERVVVYDEPGTT 212

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN-- 309
           RD + +  + +G    + DTAG+R    +    EK  + +T   +E A +++L+ +    
Sbjct: 213 RDSIAVPFERDGQHYTLIDTAGVRRRARVQETVEKFSVVKTLEAIERASVVMLVTDAQEG 272

Query: 310 -SKKEISFP-----KNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFT 347
            ++++              + +  K D                 ++       H +S+  
Sbjct: 273 ITEQDAHLAGHVLQAGRALVLVINKWDGLDPDQRRKVRRDLDLRFAFLGFARHHFVSALH 332

Query: 348 GEGLEELINKIKSI 361
           G G+  L+  ++  
Sbjct: 333 GSGVGLLLESVERA 346



 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L     A+V D PG TRD     +  +G    + DT G+ E  
Sbjct: 5   IALVGRPNVGKSTLFNRLTGSRDALVADHPGLTRDRQYGIVRHQGGHAVVVDTGGMGEEL 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTKSDLYS 333
           + V     ++    +  AD ++ L +  +      +EI+       +       K+D   
Sbjct: 65  EGVGGCMHEQARAAIAGADAVVFLVDGQAGATVGDEEIAAELRRAQVPVFLAVNKTDGLD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILS 363
                 D         H I++  G G+ EL++ + ++L 
Sbjct: 125 AGVAAADFHGLGLQPVHAIAATRGRGVGELLDAVFALLP 163


>gi|307946716|ref|ZP_07662051.1| ribosome-associated GTPase EngA [Roseibium sp. TrichSKD4]
 gi|307770380|gb|EFO29606.1| ribosome-associated GTPase EngA [Roseibium sp. TrichSKD4]
          Length = 478

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 32/208 (15%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L      I DTAG+ 
Sbjct: 2   GATVAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGEARLGDLRFTIVDTAGLE 61

Query: 279 ETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
           + D    E    K+T   +E A+ IL + +  +           I+       I +  K+
Sbjct: 62  DADASSLEGRMRKQTEDAIEEANAILFVIDARAGVTPLDAHFAAIARKTTTPVILLANKA 121

Query: 330 D-------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +       LY +Y+        +S+  GEGL +L + +K          P+    ++   
Sbjct: 122 EGRAGESGLYESYSLGLGEPIAVSAEHGEGLADLYDALK----------PYVDAINEEEE 171

Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAEN 408
               +    +E+    + D   ++I E 
Sbjct: 172 ALRDEARTSIEL----KFDEDGELIEEE 195



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 89/231 (38%), Gaps = 31/231 (13%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLK-NDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSL 235
           + +  + +  + ++     + LK ++    I +       ++   ++ I+G  NAGKS+L
Sbjct: 162 YVDAINEEEEALRDEARTSIELKFDEDGELIEEEDDPVGTKDRPLRVAIVGRPNAGKSTL 221

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRT 292
            N +  +D  +     G TRD +++D +     VK+ DTAGIR    +    EK  +   
Sbjct: 222 INRMLGEDRMLTGPEAGITRDSISVDWEWRERHVKLFDTAGIRRKARVQEKLEKLSVADA 281

Query: 293 FLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI- 343
              ++ A+++++  +  +  E        +   +    +    K DL       +  +  
Sbjct: 282 LRAIKFAEVVVVTLDATNSFEKQDLQIIDLVAREGRALVIAINKWDLVEDREAAWKKIRD 341

Query: 344 -----------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                            S   G+G++ L+  + +   +   ++  S  +  
Sbjct: 342 ANERCFNQIRGVQIATLSGMQGQGIDRLLESVFTAYEHWNARISTSRLNRW 392


>gi|208434748|ref|YP_002266414.1| GTP-binding protein-like protein [Helicobacter pylori G27]
 gi|238058976|sp|B5Z7J9|DER_HELPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|208432677|gb|ACI27548.1| GTP-binding protein-like protein [Helicobacter pylori G27]
          Length = 460

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 25/198 (12%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + S  +     E      ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   +
Sbjct: 182 LESLENNAPEEETKEEIIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETI 241

Query: 263 DLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEIS 315
            +    +   DTAGIR    I  +EK  ++RT   +E + + LL+ ++++      ++IS
Sbjct: 242 LIGDQKICFVDTAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKIS 301

Query: 316 FPKNID---FIFIGTKSDLYSTYTEEY---------------DHLISSFTGEGLEELINK 357
              +      I I  K D+     EE                    S      ++E+ +K
Sbjct: 302 SLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHK 361

Query: 358 IKSILSNKFKKLPFSIPS 375
           I  +     +++P S+ +
Sbjct: 362 IIEVYECFSRRIPTSLLN 379



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 28/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERAYAFSSF-----------------GMPKSFNISVSHNRGISALIDAVLNALSLN 170

Query: 394 SLNEKDCGLDII 405
            + E+D   DI+
Sbjct: 171 QIIEQDLDADIL 182


>gi|226320990|ref|ZP_03796535.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 29805]
 gi|226233591|gb|EEH32327.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 29805]
          Length = 433

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 17/212 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +   S ++  +  +   K     +    +L F     V     + +     FLK ++   
Sbjct: 107 LRKYSSKVVLVLNKVDTKDKECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFLKVEV--- 163

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              GK+G       K+ I+G  N+GKS+L N L+  ++AIV+D PGTTRD +       G
Sbjct: 164 ---GKVGIESGADIKVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNG 220

Query: 267 YLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISF-- 316
            + ++ DTAGIR     ++IVE   + R    ++  D++ LL ++  K     K+I+   
Sbjct: 221 KVFEVVDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEKLTSQDKKIAHYV 280

Query: 317 -PKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
             K    + + +K DL       ++ L S   
Sbjct: 281 TKKGKGIVIVFSKWDLVDESKGYFEALKSHVK 312



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 16/155 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNI--DFIFIGTKSDLYS 333
            D + K  +++    +E  DLILL+ +IN       + I   +      + +  K D   
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDINEILLEDYQIIERLRKYSSKVVLVLNKVDTKD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIK 359
                ++            S+    G+ +L + +K
Sbjct: 126 KECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFLK 160


>gi|92114975|ref|YP_574903.1| small GTP-binding protein protein [Chromohalobacter salexigens DSM
           3043]
 gi|123387342|sp|Q1QTK4|DER_CHRSD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|91798065|gb|ABE60204.1| Small GTP-binding protein protein [Chromohalobacter salexigens DSM
           3043]
          Length = 467

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 11/134 (8%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + NG +I ++G  N GKS+L N L  +D  +V D  GTTRD + I  +  G    + DTA
Sbjct: 174 LSNGIRIGVIGRPNVGKSTLVNRLLGEDRVVVYDEAGTTRDAIEIPFERRGKPYVLVDTA 233

Query: 276 GIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIF 324
           G+R   ++    EK  I +T   ++  ++ +++ +  S          +         + 
Sbjct: 234 GVRRRKNVSEAAEKFSIIKTLEAIKACNVAIMVLDARSGLVEQDLHLLDYVLSSGRALVL 293

Query: 325 IGTKSDLYSTYTEE 338
              K D      ++
Sbjct: 294 AVNKWDGLEQEAKD 307



 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 67/156 (42%), Gaps = 17/156 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD    +  L      + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGNGVLGDKTYTVIDTGGISGNE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYS 333
           + ++    +++ L ++ AD++L + +  +   ++                 +  K+D   
Sbjct: 65  EGLDAAMAEQSLLAIDEADIVLFMVDGRTGLNVADEAIANHLRVNQKKTWLVVNKTDGLE 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKS 360
            ++   +            ++  G  +  LI+++ +
Sbjct: 125 EHSAMAEFWRLGLGDPRPIAAAHGRNVTSLIDEVLA 160


>gi|325293656|ref|YP_004279520.1| GTP-binding protein engA [Agrobacterium sp. H13-3]
 gi|325061509|gb|ADY65200.1| GTP-binding protein engA [Agrobacterium sp. H13-3]
          Length = 476

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 18/171 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L      I DTAG+ +
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLRFTIIDTAGLEQ 62

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
           +  + ++     +T   ++ AD+ L + +  +          E+   +    + +  KS+
Sbjct: 63  SGPETLQGRMWAQTEAAIDEADVTLFVVDAKAGLTPADETLAEMLRRRGKPVVLVANKSE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              +    YD           IS+  G+G+ +L + I   +       P  
Sbjct: 123 ARGSDAGFYDAFTLGLGDPCAISAEHGQGMIDLRDAIVEAIGEDVAFPPEV 173



 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 65/170 (38%), Gaps = 29/170 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R 
Sbjct: 205 LRVAIIGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRR 264

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +  +   +  A+ ++++ +     E        +   +    +    K
Sbjct: 265 KARVTEKLEKLSVADSLRSIRFAETVVIVFDSTIPFEKQDLQLVDLVIREGRAAVLAFNK 324

Query: 329 SDLYS------------------TYTEEYDHLISSFTGEGLEELINKIKS 360
            DL                             +S  TG GL+ L+  I  
Sbjct: 325 WDLVEDPQAFLADLREKTERLLPQARGIRAVPMSGQTGYGLDRLMQNIID 374


>gi|227822913|ref|YP_002826885.1| GTP-binding protein EngA [Sinorhizobium fredii NGR234]
 gi|254783163|sp|C3MG60|DER_RHISN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|227341914|gb|ACP26132.1| GTP-binding protein, essential for cell growth [Sinorhizobium
           fredii NGR234]
          Length = 476

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 18/164 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-R 278
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L     +I DTAG+ +
Sbjct: 3   FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGLEQ 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
              D ++     +T   ++ ADL L + +  +          E+   +    I +  KS+
Sbjct: 63  SAPDSLQGRMWAQTEQAIDEADLSLFVIDAKAGLTPADETLAEMLRRRGKPVIVVANKSE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNK 365
              +    YD           IS+  G+G+ +L + I + L  +
Sbjct: 123 ARGSDGGFYDAFTLGLGEPCPISAEHGQGMLDLRDAIVAALGEE 166



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 35/231 (15%)

Query: 159 GQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN 218
              +D    I + +  +  F   EDV               +++      + +       
Sbjct: 150 QGMLDLRDAIVAALGEERAFPPREDVAETDVDIRPAGAGGGEDE------ESEPAYDKTK 203

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             ++ I+G  NAGKS+L N    +D  +     G TRD ++++ +  G  +K+ DTAG+R
Sbjct: 204 PLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWEWRGRTIKMFDTAGMR 263

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGT 327
               +    EK  +      +  A+ ++++ +     E        +   +    +    
Sbjct: 264 RKAKVQEKLEKLSVADALRAIRFAETVVIIFDATIPFEKQDLQIVDLVLREGRAAVLAFN 323

Query: 328 KSDLYSTY------------------TEEYDHLISSFTGEGLEELINKIKS 360
           K DL   +                         IS  TG GL+ L+  I  
Sbjct: 324 KWDLVEDWQAVLADLREKTERLLPQARGIRAVPISGHTGYGLDRLMQAIIE 374


>gi|189345964|ref|YP_001942493.1| GTP-binding protein EngA [Chlorobium limicola DSM 245]
 gi|238692187|sp|B3EFY1|DER_CHLL2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189340111|gb|ACD89514.1| small GTP-binding protein [Chlorobium limicola DSM 245]
          Length = 437

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 12/150 (8%)

Query: 197 LFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
             + +DI   + + +  +   +   K+ ++G  N GKSS  NAL   +  IV+DIPGTTR
Sbjct: 154 ADMLDDILESLPESEHTDDDEDTSVKLAVVGRPNVGKSSFVNALLGTNRHIVSDIPGTTR 213

Query: 256 DVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           D +      +     + DTAG+R+    D  VE     RT   +E   + ++L +  +  
Sbjct: 214 DAIDSRFIRKQQEYVLIDTAGLRKRTKIDAGVEFYSSLRTEKAIERCQVAVVLLDARAGL 273

Query: 313 E--------ISFPKNIDFIFIGTKSDLYST 334
           E        ++  +    + +  K DL   
Sbjct: 274 EKQDLKIINMAEERKKGVLLLVNKWDLIEK 303



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + ++  AIV   PG TRD   +  + +G    + DT G    +
Sbjct: 5   IALVGRPNVGKSTLFNRILRQKSAIVDSTPGVTRDRHIMPGEWQGKQFLLMDTGGYCAAN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPK-------NIDFIFIGTK--- 328
           D++    I++T   + +AD ++ L ++ S     ++   K       N    F   K   
Sbjct: 65  DVISSSMIEQTLTAIRDADCVIFLTDVRSGLTYDDLEISKLLQRTFQNKQIFFAVNKVES 124

Query: 329 ----SDLYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                D  S  +  +   + +S+  G G+ ++++ I   L         
Sbjct: 125 PQLTIDAESFVSTGFTRPYFLSAKDGSGVADMLDDILESLPESEHTDDD 173


>gi|55820417|ref|YP_138859.1| GTP-binding protein EngA [Streptococcus thermophilus LMG 18311]
 gi|55822299|ref|YP_140740.1| GTP-binding protein EngA [Streptococcus thermophilus CNRZ1066]
 gi|81820353|sp|Q5M1D9|DER_STRT1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|81820516|sp|Q5M5X5|DER_STRT2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|55736402|gb|AAV60044.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           thermophilus LMG 18311]
 gi|55738284|gb|AAV61925.1| GTP-binding protein, putative [Streptococcus thermophilus CNRZ1066]
          Length = 436

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
               ++   +  + +  AD+I+ +      +    E    I +  N   I    K D   
Sbjct: 66  APFMEQIKHQAGIAMTEADVIVFVVSGKEGVTDADEYVARILYKTNKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           +SS  G G  ++++ I   L  + ++    I 
Sbjct: 126 MRADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVGNLPTEVEEENPDII 175



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 34/188 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIR 278
            +  ++G  N GKSSL NA+  +D  I + I GTTRD +  + +D EG    + DTAG+R
Sbjct: 175 IRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGMR 234

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           ++  +    EK  I R+   ++ +D++L++  IN+++ I          +       I +
Sbjct: 235 KSGKVYENTEKYSIMRSMRAIDRSDVVLMV--INAEEGIREYDKRIAGFAHEAGKGIIIV 292

Query: 326 GTKSDLYSTYTEEYDHLI------------------SSFTGEGLEELINKIKSILSNKFK 367
             K D          +                    S+ T + L +L   IK I  ++ +
Sbjct: 293 VNKWDTIKKDNHTVANWEADIRDQFQFLSYAPIVFVSAKTKQRLNKLPEMIKRISESQNR 352

Query: 368 KLPFSIPS 375
           ++  ++ +
Sbjct: 353 RISSAVLN 360


>gi|123965688|ref|YP_001010769.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9515]
 gi|166225838|sp|A2BV51|DER_PROM5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123200054|gb|ABM71662.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str.
           MIT 9515]
          Length = 458

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 11/148 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   + +    E   +   + I+G  N GKSSL NA+  +  AIV+DI GTT D 
Sbjct: 156 DLLDLVIDELPKDFDVEDKEDKVMMSIIGRPNVGKSSLLNAICGEKRAIVSDISGTTTDS 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI-----N 309
           +   +    +L KI DTAGIR   ++    E  GI R F  ++ +D+ +L+ +      +
Sbjct: 216 IDTLIKKNSHLWKIVDTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTD 275

Query: 310 SKKEIS---FPKNIDFIFIGTKSDLYST 334
             ++++     +    + +  K DL   
Sbjct: 276 QDQKLAGRIEEQGRACVIVVNKWDLVEK 303



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 19/164 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   ++ DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQVVDTGGLVFED 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
           D     E   + FL +E A + L + + N   +  ++S  K     +   I    K +  
Sbjct: 66  DSEFLPEIRTQVFLALEEASIALFVVDGNQGVTTGDLSIAKWLRNSDCKTIVAVNKCESL 125

Query: 333 S----------TYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
           S                 + +S+  G G  +L++ +   L   F
Sbjct: 126 SLGISMASEFWKLGLGEPYPVSAIHGSGTGDLLDLVIDELPKDF 169


>gi|314967527|gb|EFT11626.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL037PA1]
          Length = 456

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 66/168 (39%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 24  VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             +     ++  L +  AD +L + + N        +  ++        +    K D   
Sbjct: 84  SGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNAR 143

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +E               S+  G G  +L++ + ++L  +      S
Sbjct: 144 GESEAATMWNLGLGEPRPVSAMHGRGSGDLLDALIAVLPKEQASYESS 191



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 110/283 (38%), Gaps = 29/283 (10%)

Query: 119 ENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
           E  ++ +  A+++  ++ +         ++  +  +         +K+ + R   EA   
Sbjct: 92  EQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNARGESEAATM 151

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLF 236
           ++         S         L + + + + + +      +G + + I+G  N GKSSL 
Sbjct: 152 WNLGLGEPRPVSAMHGRGSGDLLDALIAVLPKEQASYESSDGPRRVAIVGKPNVGKSSLL 211

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTF 293
           N +A+++  +V+DI GTT D +   + + G + +  DTAG+R+        E     RT 
Sbjct: 212 NRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKRVKEASGHEYYASLRTQ 271

Query: 294 LEVENADLILLLKEINSK------KEISFPKNIDFIFI--GTKSDLYS------------ 333
             +E A++ +++ + +        + ++  +N     +    K DL              
Sbjct: 272 AAIERAEVCVVVIDASESISDQDLRILTMVENAGRAMVIAYNKWDLTDEERRRYLEREIE 331

Query: 334 ----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                Y+      IS+  G  +++L   I++       ++   
Sbjct: 332 RDVQAYSWAPRVNISALNGRNVDKLEKAIETAAEGWEMRISTG 374


>gi|212690606|ref|ZP_03298734.1| hypothetical protein BACDOR_00092 [Bacteroides dorei DSM 17855]
 gi|212666852|gb|EEB27424.1| hypothetical protein BACDOR_00092 [Bacteroides dorei DSM 17855]
          Length = 396

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   + + G  N+GKSSL NAL  +D A+V+DIPGTT D ++  ++++G       DT G
Sbjct: 10  NRLHVALFGRRNSGKSSLINALTGQDTALVSDIPGTTTDTVSKAMEIQGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFIGTKSD 330
             +  ++ E   I RT   +E  D+ LLL E  + +E          KNI  I +  K+D
Sbjct: 70  FDDEGELGEMRII-RTLKAIEQTDIALLLCEDEAHEEEKKWMKQLEEKNIPVILLLNKAD 128

Query: 331 LYSTYT----------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +                +   +IS+    G++++   I   L   F +   +
Sbjct: 129 IRKDIASTLLRIEKDCGQKPLVISAKERTGIKKIHQAILEKLPADFGQQTIT 180


>gi|225551948|ref|ZP_03772888.1| ribosome-associated GTPase EngA [Borrelia sp. SV1]
 gi|225370946|gb|EEH00376.1| ribosome-associated GTPase EngA [Borrelia sp. SV1]
          Length = 433

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 17/212 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +   S ++  +  +   K     +    +L F     V     + +     FLK ++   
Sbjct: 107 LRKYSSKVVLVLNKVDTKDKECLAHEFHNLGFKHYFLVSAAHCRGITKLRDFLKVEV--- 163

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              G+ G       K+ I+G  N+GKS+L N L+  ++AIV+D PGTTRD +       G
Sbjct: 164 ---GEAGIESSADIKVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNG 220

Query: 267 YLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF-- 316
            + ++ DTAGIR     ++IVE   + R    ++  D++ LL ++     +  K+I+   
Sbjct: 221 KVFEVVDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVKEELTSQDKKIAHYV 280

Query: 317 -PKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
             K    I + +K DL       ++ L S   
Sbjct: 281 TKKGKGIIIVFSKWDLVDESKGYFEALKSRVK 312



 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 16/169 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNI--DFIFIGTKSDLYS 333
            D + K  +++    ++  DLILL+ +IN       + I   +      + +  K D   
Sbjct: 66  KDEISKIVVQKVLSSLKKVDLILLVLDINEILLEDYQIIERLRKYSSKVVLVLNKVDTKD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                ++            S+    G+ +L + +K  +     +    I
Sbjct: 126 KECLAHEFHNLGFKHYFLVSAAHCRGITKLRDFLKVEVGEAGIESSADI 174


>gi|220924493|ref|YP_002499795.1| GTP-binding protein EngA [Methylobacterium nodulans ORS 2060]
 gi|219949100|gb|ACL59492.1| small GTP-binding protein [Methylobacterium nodulans ORS 2060]
          Length = 447

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  + +A+V D PG TRD    +  L   L  I DTAG+ E D
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGEARLGHLLFTIIDTAGLEEAD 65

Query: 282 DIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
                     +T   +  AD +L + +  +          E+    +   I +  K++  
Sbjct: 66  SESLAGRMRAQTEAAIAEADAVLFVIDARAGLLPADQPFAELVRRADKPVILLANKAEGG 125

Query: 333 STYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +     Y            +S+  GEG+ +L++ +  +L    +    +
Sbjct: 126 AGLAGAYEAFGLGLGDPVPVSAEHGEGMGQLLDALAEVLPEPDEAEDEA 174



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/328 (17%), Positives = 116/328 (35%), Gaps = 38/328 (11%)

Query: 95  ILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGE 153
           +L  +     L  A+    + R     +  + EA+++  +I +   +         +   
Sbjct: 51  LLFTIIDTAGLEEADSESLAGRMRAQTEAAIAEADAVLFVIDARAGLLPADQPFAELVRR 110

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213
                    +K         A   F          S E    +  L + ++  + +    
Sbjct: 111 ADKPVILLANKAEGGAGLAGAYEAFGLGLGDPVPVSAEHGEGMGQLLDALAEVLPEPDEA 170

Query: 214 EIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           E    G    K+ I+G  NAGKS+L N +  ++  +V    G TRD +++D +  G  +K
Sbjct: 171 EDEAGGDRPLKVAIVGRPNAGKSTLINRMLGENRLLVGPEAGITRDSISLDWEWRGRRIK 230

Query: 271 ISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNID 321
           + DTAG+R     DD +EK  +      V  A+++++L +     E      +   +   
Sbjct: 231 LHDTAGMRRRARVDDKLEKLAVSDGLRAVRFAEVVVVLLDATIPFEKQDLTIVDLVEQEG 290

Query: 322 FIFI--GTKSDLYS------------------TYTEEYDHLISSFTGEGLEELINKIKSI 361
              +    K DL +                           +S   G G++ L+  + + 
Sbjct: 291 RALVIGLNKWDLVADQPGLLKELKEKAARLLPQVRGAAVVPLSGLAGNGIDRLMQAVVAA 350

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                +++P +     R    LS+ V+ 
Sbjct: 351 FEVWNRRVPTA-----RINQWLSEAVQA 373


>gi|208780512|ref|ZP_03247852.1| GTPase of unknown function family protein, putative [Francisella
           novicida FTG]
 gi|254372413|ref|ZP_04987903.1| hypothetical protein FTCG_01637 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570141|gb|EDN35795.1| hypothetical protein FTCG_01637 [Francisella novicida GA99-3549]
 gi|208743658|gb|EDZ89962.1| GTPase of unknown function family protein, putative [Francisella
           novicida FTG]
          Length = 465

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              +  E  R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G 
Sbjct: 172 QTQEHKEQQRHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQ 231

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP---- 317
              I DTAG+R+   +    EK  + +T   ++++++++ + +     S +++S      
Sbjct: 232 KYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGISDQDLSLIHFAI 291

Query: 318 -KNIDFIFIGTKSD 330
                 +    K D
Sbjct: 292 KNGRALVLAVNKWD 305



 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G +N GKS+LFN L     A+V D  G TRD        +     + DT GI +
Sbjct: 3   FLVAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGISD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D   ++   K++ + ++ A+L+  + +  S
Sbjct: 63  KDVGFDEFMAKQSQIAIDEANLVFFVVDGRS 93


>gi|295320974|gb|ADG01352.1| tRNA modification GTPase TrmE [Clostridium botulinum F str. 230613]
          Length = 153

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 11/146 (7%)

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE----------YDHLISSFTGEGLEELI 355
            +    + + F KN  +I +  K DL     EE          Y    S     GL EL 
Sbjct: 8   IDEEDIEIMDFIKNKKYIVLLNKLDLNKDLNEENHFIKELDSKYIIKTSVKNNSGLNELK 67

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRLASV 414
             IK++  +   K      ++ RH   L ++    ++       +  +D+ + ++R A  
Sbjct: 68  ECIKNLFFSGEIKSDELTVTNARHQEALIRSRESCIQAIETLSDEISIDLASIDIRNAWK 127

Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440
            LG+ITG    E ++D IFS+FC+GK
Sbjct: 128 YLGEITGDTLDENIIDKIFSEFCLGK 153


>gi|291550500|emb|CBL26762.1| GTP-binding protein Era [Ruminococcus torques L2-14]
          Length = 299

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 83/208 (39%), Gaps = 21/208 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   +   DT GI +  
Sbjct: 10  VTLIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSD--- 330
           + + +  +      +   D++L L E         K  I   K      I +  K D   
Sbjct: 70  NKLGEYMVNIAERSLNEVDVVLWLVEPSTFIGAGEKHIIEQLKKVKTPVILVINKVDMVK 129

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     Y +E D      +S+  G+  +EL+N I   L    +       + +   
Sbjct: 130 KEEVLTFIDAYRKECDFAEIVPVSARRGDNTDELVNVIMKYLPYGPQFYDEDTITDQPER 189

Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAEN 408
             +++ +R   + SLNE+      +A +
Sbjct: 190 QIVAEIIREKALHSLNEEIPHGIAVAID 217


>gi|88608743|ref|YP_506419.1| putative GTP-binding protein EngA [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600912|gb|ABD46380.1| putative GTP-binding protein EngA [Neorickettsia sennetsu str.
           Miyayama]
          Length = 473

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 14/196 (7%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +++ I   +   K G   +   K+ ILG  N GKSSL N    KD  +V  I GTTRD +
Sbjct: 153 IESFIPEQLDTPKNGSEEQRRIKVAILGQPNVGKSSLMNKFVGKDRVLVLPIAGTTRDPI 212

Query: 259 TIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN----SK 311
           + +L  +    ++ DTAG+R+     D +EK    R       +D+++ + +I+     +
Sbjct: 213 SDELQWKCTTFELVDTAGLRKKQRVTDGLEKICNSRALRTSAESDVVIFMCDISNFTLER 272

Query: 312 KEIS-----FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
           ++         +    I +G K D       E      S   + L    ++I     +  
Sbjct: 273 QDFLLMNRILEQGKPMILVGNKKDAVDAIELENIKDFISLQAQKLIA--SQIPIFFISCL 330

Query: 367 KKLPFSIPSHKRHLYH 382
            +  FS    +    H
Sbjct: 331 HEGDFSYILDECRRLH 346



 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 18/177 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +++ +++ I+G +N GKS+LFN +AK+  +I  D  G TRDV+   + L +G  + + DT
Sbjct: 1   MQSTFRVSIVGKANVGKSTLFNKMAKEKRSITMDRKGVTRDVVVRRISLSDGKSLLLLDT 60

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI--------DFIFIG 326
           AG     +    E ++RT   ++ +D++L + +     E     N           + + 
Sbjct: 61  AGF----NPQHPETVERTEYAIKESDMVLFVIDNKIDSEDMLFANWLRRNAGNSKIVLVC 116

Query: 327 TKSDLY-----STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
            KSD       S +  +   LIS+    GL ELI+ I+S +  +           +R
Sbjct: 117 NKSDRKDRDDCSLFGFQNVFLISAEHSLGLRELISYIESFIPEQLDTPKNGSEEQRR 173


>gi|160900447|ref|YP_001566029.1| GTP-binding protein EngA [Delftia acidovorans SPH-1]
 gi|238687162|sp|A9BMU9|DER_DELAS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|160366031|gb|ABX37644.1| small GTP-binding protein [Delftia acidovorans SPH-1]
          Length = 448

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 27/187 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +   ++ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG
Sbjct: 179 QKPIRLTVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERAGQKFELIDTAG 238

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFI 325
           +R    +    EK  + +T   +E+A+++LLL +      +    I+          +  
Sbjct: 239 LRRKGRVFEAIEKFSVVKTLQAIESANVVLLLIDATQGVTDQDAHIAGYVLESGRAVVLA 298

Query: 326 GTKSDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    Y  +                  H IS+   +GL  L N I         K+
Sbjct: 299 VNKWDAVDDYQRQMLERSIETRLSFLKFAPMHFISAEKRQGLGPLWNSIIQAHKAATCKM 358

Query: 370 PFSIPSH 376
           P  + + 
Sbjct: 359 PTPVLTR 365



 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD          +   + DT G   + 
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFL 294
              + KE  ++T  
Sbjct: 65  SSGIFKEMARQTQQ 78


>gi|307243689|ref|ZP_07525829.1| GTP-binding protein Era [Peptostreptococcus stomatis DSM 17678]
 gi|306492898|gb|EFM64911.1| GTP-binding protein Era [Peptostreptococcus stomatis DSM 17678]
          Length = 300

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+L N +  + +AI++D P TTR+ +      +   +   DT 
Sbjct: 3   YKSGF-VSIVGRPNVGKSTLMNNMVGEKIAIMSDKPQTTRNTIQAVYTDDQAQIVFLDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           GI +  + + +  +K      +N D IL + + + K         E      +    +  
Sbjct: 62  GIHKPKNKLGQMMVKSAEESFKNVDCILFVVDDSDKIGKGDSMIIENLRKAKVPVFLVIN 121

Query: 328 KSDLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D  +   E +D                +S+  G  ++ LI  IK  L    K  P  +
Sbjct: 122 KVDKIANKEEIFDLIKMYDQEGLFKEIIPVSALKGSNVDSLIKAIKQTLDLGPKYFPDYM 181

Query: 374 PSHKRHLYHLSQTVR 388
            + +     +++ +R
Sbjct: 182 VTDQPERVLVAELIR 196


>gi|72161614|ref|YP_289271.1| GTP-binding protein EngA [Thermobifida fusca YX]
 gi|71915346|gb|AAZ55248.1| Small GTP-binding protein domain:GTP-binding [Thermobifida fusca
           YX]
          Length = 463

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 88/235 (37%), Gaps = 22/235 (9%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
               E  R    + ++G  N GKSSL N +  +  A+V D+PG TRD +  D + +G   
Sbjct: 12  AASDETTRVKPVVAVVGRPNVGKSSLVNRIIGRREAVVEDVPGVTRDRVAYDANWQGREF 71

Query: 270 KISDTAGIRETDDIVEKEGI-KRTFLEVENADLILLLKEIN--------SKKEISFPKNI 320
            + DT G  ET+       + ++     E AD+IL + +          +   +      
Sbjct: 72  TLVDTGGW-ETNAKGLAAMVARQAEYAAETADVILFVVDATVGITDEDEAVTRVLRATKR 130

Query: 321 DFIFIGTKSD--LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +    K D  L      E         + +S+  G G+ +L++ +   +  +   L  
Sbjct: 131 PVVLAANKVDGPLGDADAMELWNLGVGEPYPVSALHGRGIGDLLDAVLDAMPKEPPPLEE 190

Query: 372 SIPSHKRHLYHLSQ---TVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
           +     R +  + +       L      E+   +D +A   R A   L ++ G  
Sbjct: 191 AAVDGPRRVALVGRPNVGKSSLLNKLAGEERVVVDSVAGTTRDAVDELVELGGKT 245



 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 108/305 (35%), Gaps = 42/305 (13%)

Query: 96  LEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS 155
           L  +        A   +      +       E E++  ++ + T+    L+   + G   
Sbjct: 86  LAAMVARQAEYAAETADVILFVVDATVGITDEDEAVTRVLRA-TKRPVVLAANKVDG--- 141

Query: 156 SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
                    L    +    +L   E   V     + + + +  + + +        L E 
Sbjct: 142 --------PLGDADAMELWNLGVGEPYPVSALHGRGIGDLLDAVLDAMPK--EPPPLEEA 191

Query: 216 IRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
             +G + + ++G  N GKSSL N LA ++  +V  + GTTRD +   ++L G   K  DT
Sbjct: 192 AVDGPRRVALVGRPNVGKSSLLNKLAGEERVVVDSVAGTTRDAVDELVELGGKTWKFIDT 251

Query: 275 AGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFI 323
           AGIR     ++        RT   +E A++ ++L + +           +         +
Sbjct: 252 AGIRRRFRALQGADYYATMRTATALERAEVAVVLLDASEPLAEQDLRIIDQVIEAGRALV 311

Query: 324 FIGTKSDLYST-----YTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFK 367
               K DL          +E D             IS+ TG  +E L+  I+  L N   
Sbjct: 312 LAFNKWDLLDDERRYYLEKEIDRQLFRVSWAPRVNISAKTGRHVERLVPAIEQGLENWET 371

Query: 368 KLPFS 372
           ++   
Sbjct: 372 RISTG 376


>gi|94501121|ref|ZP_01307644.1| predicted GTPase [Oceanobacter sp. RED65]
 gi|94426697|gb|EAT11682.1| predicted GTPase [Oceanobacter sp. RED65]
          Length = 482

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 27/181 (14%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G +I ++G  N GKS+L N +  +D  +V D PGTT D + I  +       + DTAG+R
Sbjct: 181 GVRISVVGRPNVGKSTLVNRMLGEDRVVVYDHPGTTMDSIEIPYERNEKPYTLIDTAGVR 240

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINS---KKEIS-----FPKNIDFIFIGT 327
              +I    EK  I +    +++A++ +++ +      +++++            +    
Sbjct: 241 RRKNIKEAAEKFSIVKALQAIQDANVCIVVIDAREGIVEQDLTMLSFVLNSGKGLVIALN 300

Query: 328 KSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           K D      +++                 H IS+  G G+  L   +     + +  L  
Sbjct: 301 KWDGMDIEQKDFVKKELERRLSFVDWADMHFISAKHGTGVGHLYESVDEAYKSAYMNLST 360

Query: 372 S 372
           S
Sbjct: 361 S 361



 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 13/141 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+ G TRD       +      + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADLAGLTRDRKFGAGKVGERDYIVVDTGGISGME 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTKSDLYS 333
             ++ +  +++F  ++ AD++L L +      ++ K I+            +  K D   
Sbjct: 65  QGLDAKMAEQSFQAMDEADIVLFLVDARAGLTSADKMIAQHLRATEKKTYVVVNKID--- 121

Query: 334 TYTEEYDHLISSFTGEGLEEL 354
                 D   S F   GL EL
Sbjct: 122 --GLNPDVATSEFYELGLGEL 140


>gi|319779671|ref|YP_004130584.1| GTP-binding protein EngA [Taylorella equigenitalis MCE9]
 gi|317109695|gb|ADU92441.1| GTP-binding protein EngA [Taylorella equigenitalis MCE9]
          Length = 452

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 27/189 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N+L  +   I  D+PGTTRD + ID +      K+ DTAG+R+
Sbjct: 187 IKLAIVGRPNVGKSTLINSLIGEQRVIAFDLPGTTRDAIEIDFEHNNKKYKLIDTAGLRK 246

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              +    EK  + +T   +E  ++++L+ +  S+                   +    K
Sbjct: 247 RGRVFESIEKFSVIKTLQAIEACNVVVLVLDAQSEISEQDAHIAGFILESGRALVVAINK 306

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D       ++                 H IS+   +G++ L+  +       F+KLP  
Sbjct: 307 WDGLDEDKRDWVIREFERKLRFLSFAKVHFISALKSQGIKSLLKSVNLAHEAAFRKLPTP 366

Query: 373 IPSHKRHLY 381
             + +    
Sbjct: 367 KLTRELQAA 375



 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 18/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   AIV D  G TRD    +  +      + DT G     
Sbjct: 7   IALVGRPNVGKSTLFNRLTRSRNAIVADYSGLTRDRHYGEGRIGDRPFLVIDTGGFEPKV 66

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLY 332
              + KE  ++T L +  +D+++ L +  S       +I+       +  +    K++  
Sbjct: 67  KTGILKEMARQTELAISESDVVIFLVDARSGINAQDHDIATKLRKVGVPVLLAVNKAEGL 126

Query: 333 STYTEEYDHL---------ISSFTGEGLEELIN 356
                  +           ISS  G+G+  LI+
Sbjct: 127 QPNQANAEFHELGLGEPLAISSAHGDGVANLID 159


>gi|33860948|ref|NP_892509.1| GTP-binding protein EngA [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|41017012|sp|Q7V2S6|DER_PROMP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|33639680|emb|CAE18850.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 458

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 11/132 (8%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E   +   + I+G  N GKSSL NA+  +  AIV+DI GTT D +   +  + +L KI D
Sbjct: 172 EDKEDKIMMSIIGRPNVGKSSLLNAICGEKRAIVSDISGTTTDSIDTLIKKDSHLWKIVD 231

Query: 274 TAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDF 322
           TAGIR   ++    E  GI R F  ++ +D+ +L+ +      +  ++++     +    
Sbjct: 232 TAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTDQDQKLAGRIEEQGRAC 291

Query: 323 IFIGTKSDLYST 334
           + +  K DL   
Sbjct: 292 VIVVNKWDLVEK 303



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 19/158 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   ++ DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWAGREFQVVDTGGLVFED 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD-- 330
           D     E   + FL +E A L L + + N   +  ++S  K         I    K +  
Sbjct: 66  DSEFLPEIRTQVFLALEEASLALFVVDGNQGVTDGDLSIAKWLRNSACKTIVAVNKCEST 125

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINKIKS 360
            L  +   E+        + +S+  G G  +L++ +  
Sbjct: 126 SLGVSLASEFWKLGLGEPYPVSAIHGSGTGDLLDLVID 163


>gi|108763403|ref|YP_631947.1| GTP-binding protein Era [Myxococcus xanthus DK 1622]
 gi|108467283|gb|ABF92468.1| GTP-binding protein Era [Myxococcus xanthus DK 1622]
          Length = 314

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 77/197 (39%), Gaps = 26/197 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   ++G  N GKS+L NAL  + +AIV+  P TTR+ +   +      V   DT G
Sbjct: 8   RSGF-AALIGRPNVGKSTLLNALTGEKIAIVSPKPQTTRNRILGVVTRPEGQVAFIDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIF 324
           I +    + +  ++      E  DL+L L E  + ++                       
Sbjct: 67  IHQAKGELNRYMVEVALQAAEEVDLVLFLIEPPASEKPEVSPGNRAILDRLQKIGKPTFL 126

Query: 325 IGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +  K D         L   Y +E+       IS+   +G+E L + +   L         
Sbjct: 127 VINKIDSVPKSQLLPLIDLYRQEFPFAEVVPISAREKDGVERLFHTVLGHLPEGENVFDE 186

Query: 372 SIPSHKRHLYHLSQTVR 388
            + + ++    +++ +R
Sbjct: 187 DMLTDQQERALVAEYIR 203


>gi|91205027|ref|YP_537382.1| GTP-binding protein EngA [Rickettsia bellii RML369-C]
 gi|122426010|sp|Q1RK21|DER_RICBR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|91068571|gb|ABE04293.1| GTP-binding protein [Rickettsia bellii RML369-C]
          Length = 452

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 15/157 (9%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  D 
Sbjct: 13  LVGRPNVGKSTLFNRLSMRKKAIVHDLPGVTRDRKYTDGRIGSFEFSLIDTPGLEENPDS 72

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTY 335
             K  +++T   +  ADLI  + +  S          +     N   + +  K +    +
Sbjct: 73  FGKRLMEQTTKAINEADLICFMVDSRSGILPDDKLLSDFVRKYNKPAVLVINKCEKAFDF 132

Query: 336 TEEYDH-------LISSFTGEGLEELINKIKSILSNK 365
            +EY          IS+  G G+ +L ++I + L  +
Sbjct: 133 DKEYYKLGFDSMVAISAEHGTGMIDLYDEIIAKLPEE 169



 Score = 84.9 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 98/251 (39%), Gaps = 28/251 (11%)

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSET-----EMQRRLSMEGMSGELSSLYGQWIDK 164
           P  F +R  E     + EA+ +  ++ S +     +      +   +     +  +    
Sbjct: 70  PDSFGKRLMEQTTKAINEADLICFMVDSRSGILPDDKLLSDFVRKYNKPAVLVINKCEK- 128

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI-IRNGYK-- 221
                +F      +    D     S E    ++ L ++I + + +    E  I +  K  
Sbjct: 129 -----AFDFDKEYYKLGFDSMVAISAEHGTGMIDLYDEIIAKLPEEDSAEAEIHDPIKGD 183

Query: 222 ---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
              IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +G  +K+ DTAG+R
Sbjct: 184 CLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKGNHIKLIDTAGLR 243

Query: 279 ET---DDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFP-----KNIDFIFIGT 327
           +     + +EK         ++ A+ ++L+ +  S    ++++       +    + +  
Sbjct: 244 KKATITESLEKLSASDAINSIKFANTVILMIDALSPLKQQDLNIASHVANEGRSIVIVVN 303

Query: 328 KSDLYSTYTEE 338
           K DL     +E
Sbjct: 304 KWDLIKESEKE 314


>gi|170017042|ref|YP_001727961.1| GTP-binding protein engA [Leuconostoc citreum KM20]
 gi|238688961|sp|B1MYB5|DER_LEUCK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169803899|gb|ACA82517.1| GTP-binding protein engA [Leuconostoc citreum KM20]
          Length = 437

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + +AIV D PG TRD L    +   Y  ++ DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRMAGERIAIVEDKPGVTRDRLYAPAEWLNYEFRMIDTGGIELGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEI----SFPKNIDFIFIGTKSDLYS 333
           +    E   +  L ++ AD+I+++      + +  E+     +  +   I    K D   
Sbjct: 66  EPFLAEIRAQVELAIDEADVIVMVASGREGVTAADEVVAKMLYKTDKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              + YD           +S   G GL +L++ +     ++  +    
Sbjct: 126 MRQDIYDFYSLGLGDLFPVSGSHGLGLGDLLDAVVKHFPDEAAEQEDD 173



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 12/149 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  H       +      +  I+G  N GKSS+ NA+  +D  IV+DI GTTRD 
Sbjct: 154 DLLDAVVKHFPDEAAEQEDDGAIRFSIIGRPNVGKSSIVNAMLGEDRVIVSDIEGTTRDA 213

Query: 258 LTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK-- 311
           +    +  EG    + DTAG+R+   +    EK  + R    ++N+++IL++ +  +   
Sbjct: 214 IDSRFVTAEGDEFIMVDTAGMRKRGKVYENTEKYSVMRALKAIDNSNVILMVLDAEAGIR 273

Query: 312 ------KEISFPKNIDFIFIGTKSDLYST 334
                    +       I I  K D    
Sbjct: 274 EQDKHVAGFAHDAGRAMIIIVNKWDAIEK 302


>gi|308809447|ref|XP_003082033.1| GTP-binding protein-like (ISS) [Ostreococcus tauri]
 gi|116060500|emb|CAL55836.1| GTP-binding protein-like (ISS) [Ostreococcus tauri]
          Length = 500

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 34/170 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279
           + I+G  N GKSSL N LA +  +IV+D  GTTRD +   ++ +  G    + DTAGIR 
Sbjct: 229 LAIIGRPNVGKSSLLNGLAGEMRSIVSDFSGTTRDSIDTMVEDKYTGKKYTLIDTAGIRR 288

Query: 280 T------DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
                   D  EK  + R    ++ AD++ L+ +             E +  +    +  
Sbjct: 289 RTQVKSGSDGAEKLSVGRALQAMKRADVVCLVIDATQGPSQQDFVLAERATQEGCALVLC 348

Query: 326 GTKSDLYS-------TYTEEY-----------DHLISSFTGEGLEELINK 357
             K DL          YT+E                S+ TG+ ++ +++ 
Sbjct: 349 INKWDLVDKDTYTMNKYTDEMRLKLRVFEYAEIVYTSALTGQRIQNVLDA 398



 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 29/65 (44%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKS+LFN L     AIV D PG TRD +            + DT G    
Sbjct: 31  RVAVVGRPNVGKSALFNRLTGTKRAIVYDEPGVTRDRMYTRSYWGESEFMMVDTGGFENL 90

Query: 281 DDIVE 285
               E
Sbjct: 91  PRNPE 95


>gi|328676517|gb|AEB27387.1| GTP-binding protein EngA [Francisella cf. novicida Fx1]
          Length = 465

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              +  E  R+G    ++G  N GKS+L N +  +D  +V D+PGTT D ++I  +  G 
Sbjct: 172 QTQEHKEQQRHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQ 231

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP---- 317
              I DTAG+R+   +    EK  + +T   ++++++++ + +     S +++S      
Sbjct: 232 KYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGISDQDLSLIHFAI 291

Query: 318 -KNIDFIFIGTKSD 330
                 +    K D
Sbjct: 292 KNGRALVLAINKWD 305



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G +N GKS+LFN L     A+V D  G TRD        +     + DT GI +
Sbjct: 3   FLVAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGISD 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            D   ++   K++ + ++ A+L+  + +  S
Sbjct: 63  KDAGFDEFMAKQSQIAIDEANLVFFVVDGRS 93


>gi|308182994|ref|YP_003927121.1| GTP-binding protein EngA [Helicobacter pylori PeCan4]
 gi|308065179|gb|ADO07071.1| GTP-binding protein EngA [Helicobacter pylori PeCan4]
          Length = 460

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 25/198 (12%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + S  +     E      ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   +
Sbjct: 182 LESLENNAPKEETKEEVIQVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETI 241

Query: 263 DLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEIS 315
            +    +   DTAGIR    I  +EK  + RT   +E + + LL+ ++++      ++IS
Sbjct: 242 LIGDQKICFVDTAGIRHRGKILGIEKYALDRTQKALEKSHIALLVLDVSAPFVELDEKIS 301

Query: 316 FPKNID---FIFIGTKSDLYSTYTEEY---------------DHLISSFTGEGLEELINK 357
              +      I I  K D+     EE                    S      ++E+ +K
Sbjct: 302 SLADKHSLGIILILNKWDIRYAPYEEIMAALKRKFRFLEYAPVITTSCLKARHIDEIKHK 361

Query: 358 IKSILSNKFKKLPFSIPS 375
           I  +     K++P S+ +
Sbjct: 362 IIEVYECFSKRIPTSLLN 379



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 28/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKTNPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     ++  +  L++ 
Sbjct: 128 DKEKERAYAFSSF-----------------GMPKSFNISVSHNRGISALINAILSALDLN 170

Query: 394 SLNEKDCGLDII 405
            + E+D   DI+
Sbjct: 171 QIIEQDLDADIL 182


>gi|282882100|ref|ZP_06290741.1| ribosome-associated GTPase EngA [Peptoniphilus lacrimalis 315-B]
 gi|281298130|gb|EFA90585.1| ribosome-associated GTPase EngA [Peptoniphilus lacrimalis 315-B]
          Length = 439

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 30/217 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++++  I +  + +   +  ++ I+G  N GKSSLFN L+K++ +IVT+I GTTRD 
Sbjct: 155 DLLDEVTKSIDKY-VADKEDDLIRVSIIGKPNVGKSSLFNYLSKEERSIVTNIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   +  +       DTAG+R+   I   +E+  + RT   +E + + LLL +       
Sbjct: 214 IDTKIIYKDNEYIFVDTAGLRKRKKIKESIERYSVIRTLTAIERSSVCLLLVDATEGISE 273

Query: 312 -----KEISFPKNIDFIFIGTKSDLYST------------------YTEEYDHLISSFTG 348
                   +   N   I    K D                       +      IS+  G
Sbjct: 274 QDSKIAGFAHDNNKAMIICVNKWDAIEKDTYTMKNFEADVRRELPFLSYAPIIFISAMKG 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             +EEL+  I+ + +N   ++   + +   +   L+ 
Sbjct: 334 TRVEELLGLIELVDNNYNHRIQTGVLNDILNRSVLNN 370



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +  K ++I  D PG TRD +        Y   + DT G+   D
Sbjct: 6   VSIIGKPNVGKSTLFNKILGKKISITEDTPGVTRDRIYQTASWLDYSFLLVDTGGLDLKD 65

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
           + +    IK +  + VE + +I+ L +       + +EI+      N   I    K D  
Sbjct: 66  EDIFMSSIKAQVDIAVETSQVIIFLTDGIEGVSPTDREIANYLRKSNKKVILAVNKCDAK 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            T    YD            SS  G GL +L++++   +          + 
Sbjct: 126 KTKENIYDFFELGLGEPYLVSSEQGTGLGDLLDEVTKSIDKYVADKEDDLI 176


>gi|159479670|ref|XP_001697913.1| hypothetical protein CHLREDRAFT_120661 [Chlamydomonas reinhardtii]
 gi|158274011|gb|EDO99796.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 446

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 15/139 (10%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYL 268
            +  +       + I+G  N GKSSL NA+A ++ +IV D+ GTTRD +   + L  G  
Sbjct: 167 AEQDDDPDRPLAVAIVGRPNVGKSSLLNAIAGEERSIVCDMSGTTRDAVDTKVTLPTGKK 226

Query: 269 VKISDTAGIRE------TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEI 314
           + + DTAGIR+      + D  E+  + R    V  AD+ +L+ +             E+
Sbjct: 227 LTLIDTAGIRKRSRVADSPDGAEQISVDRAMRAVRRADVAVLVIDAVEGITQQDFRLSEL 286

Query: 315 SFPKNIDFIFIGTKSDLYS 333
              +    + +  K D   
Sbjct: 287 FAAEGKAVVVVVNKWDRVD 305



 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+LFN +A   VA+V D PG TRD L            + DT G+  + 
Sbjct: 1   VAIVGRPNVGKSALFNRIAGASVAVVFDQPGVTRDRLYTRAFWGDKEFVMIDTGGLMSDA 60

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNID----FIFIGTKSD 330
             +      ++    V  AD ++LL +  +      ++ +S+ ++       +    K +
Sbjct: 61  TRLPPDAIERQAAAGVAEADTVILLVDGQAGLQPGDEEILSWLRSNHPSKSLLLAVNKCE 120

Query: 331 LYSTYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             +   +            H +S+ +G G  E+++ +  +L           P  
Sbjct: 121 NVAKADQMVAEFWSTGLEPHAVSAISGTGTGEMLDVLAKMLPPPTGAEQDDDPDR 175


>gi|78778772|ref|YP_396884.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9312]
 gi|123554591|sp|Q31CE7|DER_PROM9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78712271|gb|ABB49448.1| Small GTP-binding protein domain [Prochlorococcus marinus str. MIT
           9312]
          Length = 457

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 22/206 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   + +  + E       + I+G  N GKSSL N+++ +  AIV+DI GTT D 
Sbjct: 156 DLLDLVIGELPENNIQE-EEEKIMMSIIGRPNVGKSSLLNSISGEKRAIVSDISGTTTDS 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI-----N 309
           +   +       KI DTAGIR   ++    E  GI R F  ++ +D+ +L+ +      +
Sbjct: 215 IDTLIKKGDTQWKIVDTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTD 274

Query: 310 SKKEIS---FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
             ++++     +    I +  K DL            SS   +  +EL +K+     +  
Sbjct: 275 QDQKLAGRIEEQGRACIIVINKWDLVEK--------NSSTIYQVEKELRSKL--YFLHWS 324

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEM 392
           K +  S  + +R        ++ +  
Sbjct: 325 KMIFISALTGQRVDNIFEHALKAVNQ 350



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 20/174 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   +I DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD-- 330
           D     E   + FL +E A L LL+ + N   +  ++S  K     +   I    K +  
Sbjct: 66  DSEFLPEIRAQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIIAVNKCEST 125

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINK-IKSILSNKFKKLPFSIPS 375
            L  +   E+        + +S+  G G  +L++  I  +  N  ++    I  
Sbjct: 126 TLGISLASEFWKLGLGEPYPVSAIHGSGTGDLLDLVIGELPENNIQEEEEKIMM 179


>gi|256825342|ref|YP_003149302.1| small GTP-binding domain-containing protein [Kytococcus sedentarius
           DSM 20547]
 gi|256688735|gb|ACV06537.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Kytococcus sedentarius DSM 20547]
          Length = 527

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 78/192 (40%), Gaps = 17/192 (8%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           + G  +++   + I+G  N GKS+L N    +  A+V D PG TRD +T   +  G    
Sbjct: 83  EHGNQVQSLPVVAIVGRPNVGKSTLVNRFLGRREAVVQDEPGVTRDRVTYPAEWNGVPFM 142

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKE---ISFPKNIDF 322
           + DT G       ++K   ++  + VE AD+++ + +      ++ ++   +        
Sbjct: 143 VMDTGGWEIDAKGIQKHVAQQAEVAVELADVVIFVVDATVGATDADEDVVKLLRRSRKPV 202

Query: 323 IFIGTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           + +  K D      E               S+  G+G  +L++++ +    + +     +
Sbjct: 203 LLVANKVDDLHLEGEAAALWSMGLGQPWPLSALHGKGSGDLLDEVLAKFPAEPQSDAGRV 262

Query: 374 PSHKRHLYHLSQ 385
               R +  L +
Sbjct: 263 VGGPRRVALLGR 274



 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 84/207 (40%), Gaps = 34/207 (16%)

Query: 198 FLKNDISSHIS---QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            L +++ +      Q   G ++    ++ +LG  N GKSSL N LA  +  +V ++ GTT
Sbjct: 242 DLLDEVLAKFPAEPQSDAGRVVGGPRRVALLGRPNVGKSSLLNRLAGSERVVVDNVAGTT 301

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLLKEIN 309
           RD +   ++L G      DTAGIR    + +  G+      RT   +E A++ ++L +  
Sbjct: 302 RDPVDEYIELGGRTWMFVDTAGIRR--RVHQTRGVDFYASLRTQSALEKAEVAVVLIDAG 359

Query: 310 ---SKKEISFPK-----NIDFIFIGTKSDLYSTYTEEY----------------DHLISS 345
              ++++I   +         +    K D        Y                   +S+
Sbjct: 360 EEIAEQDIRVVQQVIDSGRALVIAYNKWDTTDEERRHYLEREIERDLVQVPWAPRVNMSA 419

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS 372
             G  +++L+  +   L +   ++P  
Sbjct: 420 TRGRHVDKLVPALDQALESWDARIPTG 446


>gi|160942963|ref|ZP_02090201.1| hypothetical protein FAEPRAM212_00440 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445657|gb|EDP22660.1| hypothetical protein FAEPRAM212_00440 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103496|emb|CBL01040.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii
           SL3/3]
          Length = 447

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + +AIV D PG TRD +  + +  G+   + DT GI  + 
Sbjct: 6   VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWNGHEFLLVDTGGIEPKA 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEISFP---KNIDFIFIGTKSD-- 330
            + +     ++  + ++ AD I+++ ++      + ++++      +   I    K D  
Sbjct: 66  TEGILAHMREQAQIAIDTADCIIMVTDVRNGLTAADEDVAHMLRRSHKPIILAVNKCDKV 125

Query: 331 ------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 LY  Y   +D ++  SS  G G  +L++ + + L      +   
Sbjct: 126 GEAPMELYEFYNLGFDEVMPISSVHGHGTGDLLDAVCAHLDFSETVVEED 175



 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 83/208 (39%), Gaps = 31/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +H+   +   +  +   + I+G  N GKSSL N +  ++  IV +  GTTRD 
Sbjct: 156 DLLDAVCAHLDFSET-VVEEDRIPVAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +   +D        +DTAG+R+     D +E+  + R    VE + + L+L +       
Sbjct: 215 IDTPVDNAYGKFIFTDTAGLRKRSNISDGLERYMVVRALAAVERSRVALILVDATVGFTE 274

Query: 309 --NSKKEISFPKNIDFIFIGTKSD-------------------LYSTYTEEYDHLISSFT 347
             +     +  +    I +  K D                    +S         IS+ T
Sbjct: 275 QDSKVAGYAHEQGKACIIVVNKWDAVEGKETNTMELQRRGYAECFSFMGYAPIIFISAQT 334

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPS 375
           G  + +L+  I+ + +    ++P  + +
Sbjct: 335 GYNVNKLMQLIRDVDAENGARVPTGVLN 362


>gi|149006625|ref|ZP_01830324.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP18-BS74]
 gi|147761923|gb|EDK68886.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP18-BS74]
          Length = 358

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
               ++   +  + +E AD+I+ +      I    E    K    +   I    K D   
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              + YD           ISS  G G  ++++ I   L N++++    + 
Sbjct: 126 MRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLPNEYEEENPDVI 175



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 17/147 (11%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + I  ++   +  E   +  K  ++G  N GKSSL NA+  +D  I + + GTTRD 
Sbjct: 154 DVLDAIVENLPN-EYEEENPDVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDA 212

Query: 258 LTIDL-DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE 313
           +     D +G    + DTAG+R++  +    EK  + R    ++ +D++L++  IN+++ 
Sbjct: 213 IDTHFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEG 270

Query: 314 I----------SFPKNIDFIFIGTKSD 330
           I          +       I +  K D
Sbjct: 271 IREYDKRIAGFAHEAGKGMIIVVNKWD 297


>gi|313892548|ref|ZP_07826135.1| ribosome biogenesis GTPase Der [Dialister microaerophilus UPII
           345-E]
 gi|313118945|gb|EFR42150.1| ribosome biogenesis GTPase Der [Dialister microaerophilus UPII
           345-E]
          Length = 443

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           + I+G  N GKS++ N LA+K V+IV D+PG TRD +  D         + DT GI  RE
Sbjct: 6   VAIVGRPNVGKSTIINGLAQKRVSIVEDLPGVTRDRIYCDAQWLDREFTLIDTGGIEFRE 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDL 331
             D +      +  L +E AD+IL + ++         +  E+        +    K D 
Sbjct: 66  EADQISDGIRMQAQLAIEEADVILFVTDVRVGLLDDDVTIAEMLRKTGKPVVVAVNKVDT 125

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            +   + Y+           IS+    G  +L++KI         +    I 
Sbjct: 126 EAQEMDVYEFYALGLGDPIGISASNRVGFGDLLDKISEGFPKYEPRESEDII 177



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 12/150 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + IS    + +  E   +  +  I+G  N GKS+L N+L   + ++V D  GTTRD 
Sbjct: 156 DLLDKISEGFPKYEPRES-EDIIRTAIVGRPNVGKSTLVNSLLGYERSLVADEMGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +      +G    + DTAG+R+    D+ +EK  + R+   +++ D+ + + +       
Sbjct: 215 IDSLWTHKGKKFVLVDTAGMRKKNKIDEPLEKYSVIRSIRAIDDCDVAVFVLDAKDMLTE 274

Query: 309 NSKKEISF--PKNIDFIFIGTKSDLYSTYT 336
             KK I +        I +  K D+    T
Sbjct: 275 QDKKIIGYIHEAGKGLILMVNKWDIVEKDT 304


>gi|295098886|emb|CBK87975.1| ribosome-associated GTPase EngA [Eubacterium cylindroides T2-87]
          Length = 329

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 17/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN L  +  +IV D PG TRD +   ++       I DT GI+  D
Sbjct: 6   VAIVGRPNVGKSTIFNRLIGERKSIVDDTPGVTRDRIYGTVEWLTQSFHIIDTGGIQIED 65

Query: 282 DIVEKEGIKRTFLEVENADLILL--------LKEINSKKEISFPKNIDFIFIGTKSDLYS 333
               +E   +  + +E AD+I+         + +  +        N   +    K+D   
Sbjct: 66  QPFSEEINMQVDIAIEEADVIIFITSAKEGVMTDDMAIARKLQKSNKPVVLAVNKADNQE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                Y+           IS   G GL +L++K+  ++  K  K    I
Sbjct: 126 LQMAVYEFYSLGLGDPMTISGAHGIGLGDLLDKVIELMPKKELKPYEGI 174



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 14/149 (9%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + +   + + +L      G     ++G  N GKSSL NA+ K+D  IV++I GTTRD
Sbjct: 154 DLLDKVIELMPKKELKPY--EGITSFCVIGRPNVGKSSLVNAILKEDRVIVSNIEGTTRD 211

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---- 309
            +     ++     I DTAGIR+   I    EK  I R    +E ++++L + +      
Sbjct: 212 AIDTPFKVDDKEYMIIDTAGIRKRGKIYENIEKYSILRAMNAIERSNVVLFVIDGELGIR 271

Query: 310 ----SKKEISFPKNIDFIFIGTKSDLYST 334
                   ++       I +  K D    
Sbjct: 272 EQDKHVAGLAHEAGKGVIIVYNKWDTVDK 300


>gi|253996245|ref|YP_003048309.1| GTP-binding protein EngA [Methylotenera mobilis JLW8]
 gi|253982924|gb|ACT47782.1| small GTP-binding protein [Methylotenera mobilis JLW8]
          Length = 484

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L NAL  ++  I  D PGTTRD + IDL+  G    + DTAG+R+ 
Sbjct: 181 KVAIVGRPNVGKSTLVNALLGEERVIAYDEPGTTRDSIHIDLEKNGKHYTLIDTAGVRKR 240

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             +    EK  + +T   +E A++++L+ +                       +    K 
Sbjct: 241 GRVFEAIEKFSVIKTIQAIEEANVVILVVDAQEGITEQDAHVAAYILDAGRALVVAINKW 300

Query: 330 DLYSTYTEEYDHLISSFTGEGLE 352
           D       ++         + L+
Sbjct: 301 DGLKEDERDWIKREIDRKLQFLD 323



 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 18/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           IV++G  N GKS+LFN L K   A+V D+PG TRD              + DT G    T
Sbjct: 5   IVLVGRPNVGKSTLFNRLTKTRDALVADLPGLTRDRHYGRGIGASQPYLVVDTGGFEPHT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
           D  + K   K+T   ++ AD I+ L +     S +++             +    K++  
Sbjct: 65  DSGILKAMAKQTLQAIDEADAIIFLVDGRQGVSPQDMEIANRLRRSKCPVLLAVNKTEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELIN 356
                  D           ISS  GEG+ +++ 
Sbjct: 125 QKAVVSADFHELGLGYPLSISSAHGEGVRDIVE 157


>gi|119897222|ref|YP_932435.1| GTP-binding protein EngA [Azoarcus sp. BH72]
 gi|166224303|sp|A1K3Z3|DER_AZOSB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|119669635|emb|CAL93548.1| probable GTP-binding protein [Azoarcus sp. BH72]
          Length = 442

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 15/132 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ I+G  N GKS+L N L  ++  I  D+PGTTRD + I  +  G    + DTAG+R
Sbjct: 176 GPRVAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDAIAIPFERGGKQYTLIDTAGLR 235

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG--------- 326
               +    EK  + +T   ++ A++++L+ +  + ++IS        F+          
Sbjct: 236 RRGKVFEAVEKFSVIKTLQAIQEANVVVLVLD--AAQDISDQDAHIAGFVLDTGRALVVA 293

Query: 327 -TKSDLYSTYTE 337
             K D    Y  
Sbjct: 294 INKWDAVDDYRR 305



 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 18/157 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           IV++G  N GKS+LFN L K   A+V D PG TRD       +      + DTAG     
Sbjct: 5   IVLVGRPNVGKSTLFNRLTKTRDALVADQPGLTRDRHYGVGRVGDRDYLVVDTAGFDPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLY 332
            D +  E  ++    +  AD++L L +  +       +I+          + +  K++  
Sbjct: 65  KDGIMHEMARQAEQAIAEADVLLFLVDGRAGRTPHDDQIAAHLRRAGRPVVVVVNKAEGL 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKS 360
              T   D           +S+  G+G++ L+  + +
Sbjct: 125 DRATVAADFHALGLGAPLAVSAAHGDGVKALVELVLA 161


>gi|219850626|ref|YP_002465059.1| GTP-binding protein Era [Chloroflexus aggregans DSM 9485]
 gi|219544885|gb|ACL26623.1| GTP-binding protein Era [Chloroflexus aggregans DSM 9485]
          Length = 468

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 24/205 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L NAL  + VAIV+  P TTR  +   L   G  +   DT 
Sbjct: 173 WRSGF-VALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTP 231

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIG 326
           GI E +  + K  ++     + NAD+I  + +I+           +E+   +      + 
Sbjct: 232 GIHEPNHRLGKLMVELAERTLPNADVICFMVDISQPPSRLDRTIAREVQRARGHKL-LVL 290

Query: 327 TKSDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D                    E +  IS+    GL  L+++I   L +     P   
Sbjct: 291 NKVDQKPRQPGANYLPAYRELGEWEMEIAISARRRLGLTALLSEIGRRLPSGPPLYPLDQ 350

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            + +      ++ VR   +  L ++
Sbjct: 351 ITDQTEQQLAAEFVREKALFYLQQE 375


>gi|150376651|ref|YP_001313247.1| GTP-binding protein EngA [Sinorhizobium medicae WSM419]
 gi|150031198|gb|ABR63314.1| small GTP-binding protein [Sinorhizobium medicae WSM419]
          Length = 477

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 18/170 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-R 278
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L     +I DTAG+ +
Sbjct: 3   FTVAIIGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGLEQ 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD 330
            + D ++     +T   ++ ADL L + +  +          E+   +    + +  KS+
Sbjct: 63  SSPDSLQGRMWAQTEAAIDEADLSLFVVDAKAGLTPADKTLGEMLRRRGKPVVVVANKSE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              +    YD           IS+  G+G+ +L + I + L  +    P 
Sbjct: 123 ARGSEGGFYDAFTLGLGEPCPISAEHGQGMLDLRDAIVAALGEERAFPPA 172



 Score = 90.7 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 29/170 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R 
Sbjct: 206 LRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRR 265

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      +  A+ ++++ +     E        +   +    +    K
Sbjct: 266 KAKVQEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLVIREGRAAVLAFNK 325

Query: 329 SDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKS 360
            DL   + E                       IS  TG GL+ L+  I  
Sbjct: 326 WDLVENWQELLADLREKTERLLPQARGIRAVPISGHTGYGLDRLMQAIIE 375


>gi|303248222|ref|ZP_07334485.1| ribosome-associated GTPase EngA [Desulfovibrio fructosovorans JJ]
 gi|302490360|gb|EFL50271.1| ribosome-associated GTPase EngA [Desulfovibrio fructosovorans JJ]
          Length = 443

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 18/171 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LAK+  AI  D PG TRD L   ++L   +V + DT G+  + 
Sbjct: 5   VAIVGRPNVGKSTLFNRLAKRPKAITHDRPGVTRDRLEATVELGDRIVTLIDTGGMDFDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD-- 330
            + +E++ + +  + +  AD++L L +  + +        E         I    K D  
Sbjct: 65  PEGLERQIVVQAEIALTMADVVLFLVDGKAGRTAMDDEMAERLRRAGKPVIVAVNKVDGS 124

Query: 331 -LYSTYTEEYDHLI------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                 T ++          S+  G GL++L   +   L  K      ++P
Sbjct: 125 ERIPALTGDFHAWGFPILPLSAAHGHGLQDLAETLAKALPEKETPGEEALP 175



 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ +LG  NAGKSSL N L  ++  IV+D+ GTTRD + + L   G      DTAG+R
Sbjct: 180 GIRLAVLGRPNAGKSSLVNELLGQERLIVSDVAGTTRDAVDVALVKNGRRYVFVDTAGVR 239

Query: 279 ET---DDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIG--T 327
           +     D +E+  + +     + A++ +++ +      +  K+ IS+       F+    
Sbjct: 240 KRTRITDGLERYSVGKALGSAKRANVAVVVIDATGGVGVQDKRLISYLDKERTPFLIAVN 299

Query: 328 KSDLYST 334
           K DL   
Sbjct: 300 KIDLVPQ 306


>gi|332711902|ref|ZP_08431832.1| ribosome-associated GTPase EngA [Lyngbya majuscula 3L]
 gi|332349230|gb|EGJ28840.1| ribosome-associated GTPase EngA [Lyngbya majuscula 3L]
          Length = 463

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 93/241 (38%), Gaps = 38/241 (15%)

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           I A   +          S    N    L   + +++        I    K+ I+G  N G
Sbjct: 130 ILASQFWELNLGEPFPVSAIHGNGTGELLEKLVTYLPNVDNIPEIPE-IKVAIVGRPNVG 188

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--------EGYLVKISDTAGIRETDDI 283
           KSSL N L  ++ +IV+ I GTTRD + + +          E    ++ DTAGIR+  ++
Sbjct: 189 KSSLLNTLTGENRSIVSPISGTTRDAIDMVVQRSADPEKGTEAQTYRLIDTAGIRKKKNV 248

Query: 284 ---VEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLY 332
               E  GI R F  +  +D++LL+ +      +++         +    + +  K D  
Sbjct: 249 TYGPEFFGINRAFKAIRRSDVVLLVIDAIDGVTEQDQKLAGRIADEGRAAVIVVNKWDAI 308

Query: 333 ST------------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                                       +S+ TG+ +E +++ + +  +   +++  S+ 
Sbjct: 309 EKDSYTIYDYQKQVKDRLSFIEWAEIIFVSAMTGKRVETILDLVDTAANQHGRRVSTSVI 368

Query: 375 S 375
           +
Sbjct: 369 N 369



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N LA    AIV + PG TRD        +     + DT G+   D
Sbjct: 6   VAVIGRPNVGKSTLVNRLAGVTDAIVHNQPGVTRDRTYRAAFWQDRDYLVVDTGGLVFDD 65

Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD-- 330
           +        ++    +  A   +L+ +  +          +    +N   +    K +  
Sbjct: 66  NTEFLPLIREQAMAALAEASAAVLVVDGQAGPTAGDEAIAQWLRIQNTPVVLAVNKCESP 125

Query: 331 -----LYSTYTE---EYDHLISSFTGEGLEELINKIKSILSN 364
                L S + E        +S+  G G  EL+ K+ + L N
Sbjct: 126 QQGIILASQFWELNLGEPFPVSAIHGNGTGELLEKLVTYLPN 167


>gi|50954356|ref|YP_061644.1| GTP-binding protein EngA [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71648669|sp|Q6AGF6|DER_LEIXX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|50950838|gb|AAT88539.1| GTP-binding protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 481

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 122/344 (35%), Gaps = 57/344 (16%)

Query: 86  HGGIAVVNGIL-EELAKMPNLRLANPGEFSRRAFENGKIDLL--------EAESLADLIS 136
            G  A+VN IL    A + +         S RA  NG+   +        +A  +   ++
Sbjct: 57  VGKSALVNRILGRREAVVEDTPGVTRDRVSYRAEWNGRRFTVVDTGGWEPDARGIDASVA 116

Query: 137 SETEMQRRLS---------MEGMSGELSSLYGQWID----------KLTHIRSFIEADLD 177
           ++ E+   L+         M G +     +                K+   R    A   
Sbjct: 117 AQAEVAIDLADAVMFVVDAMVGATSTDEHVVRLLRKSDKPVFLAANKVDDARQEPSATEL 176

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSL 235
           +S      +  S      +  L + I   +           G   ++ ILG  N GKSSL
Sbjct: 177 WSLGLGEPHPVSALHGRGVADLLDKILKALPDVSAVAKQEVGGPRRVAILGRPNVGKSSL 236

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRT 292
            N  A ++  +V ++ GTTRD +   ++L G + +  DTAGIR    + +        RT
Sbjct: 237 LNKAAGEERVVVNELAGTTRDPVDEQVELGGRVWRFVDTAGIRRRVHLQQGADFYASLRT 296

Query: 293 FLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----- 339
              +E A++ +++ +++           ++        +    K DL       Y     
Sbjct: 297 STALEKAEVAVVVLDVSQPISEQDVRIIDLVLESGRALVLAFNKWDLLDDERRRYLEREI 356

Query: 340 -----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                         IS+ TG  LE+L+  ++  L +   ++P  
Sbjct: 357 EQDLAHVSWAPRVNISARTGRHLEKLVPALERALESWETRIPTG 400



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 49  LAIVGRPNVGKSALVNRILGRREAVVEDTPGVTRDRVSYRAEWNGRRFTVVDTGGWEPDA 108

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSD--- 330
             ++     +  + ++ AD ++ + +      S  E    +    +        K D   
Sbjct: 109 RGIDASVAAQAEVAIDLADAVMFVVDAMVGATSTDEHVVRLLRKSDKPVFLAANKVDDAR 168

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                  L+S    E  H +S+  G G+ +L++KI   L +
Sbjct: 169 QEPSATELWSLGLGE-PHPVSALHGRGVADLLDKILKALPD 208


>gi|15594853|ref|NP_212642.1| GTP-binding protein EngA [Borrelia burgdorferi B31]
 gi|218249913|ref|YP_002375018.1| ribosome-associated GTPase EngA [Borrelia burgdorferi ZS7]
 gi|221218131|ref|ZP_03589597.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 72a]
 gi|224532891|ref|ZP_03673503.1| ribosome-associated GTPase EngA [Borrelia burgdorferi WI91-23]
 gi|225548736|ref|ZP_03769783.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 94a]
 gi|225549607|ref|ZP_03770573.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 118a]
 gi|226321818|ref|ZP_03797344.1| ribosome-associated GTPase EngA [Borrelia burgdorferi Bol26]
 gi|8134424|sp|O51461|DER_BORBU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|2688422|gb|AAC66872.1| GTP-binding protein [Borrelia burgdorferi B31]
 gi|218165101|gb|ACK75162.1| ribosome-associated GTPase EngA [Borrelia burgdorferi ZS7]
 gi|221192079|gb|EEE18300.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 72a]
 gi|224512167|gb|EEF82556.1| ribosome-associated GTPase EngA [Borrelia burgdorferi WI91-23]
 gi|225369884|gb|EEG99331.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 118a]
 gi|225370766|gb|EEH00202.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 94a]
 gi|226233007|gb|EEH31760.1| ribosome-associated GTPase EngA [Borrelia burgdorferi Bol26]
          Length = 433

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 17/212 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +   S ++  +  +   K     +    +L F     V     + +     FLK ++   
Sbjct: 107 LRKYSSKVVLVLNKVDTKDKECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFLKVEV--- 163

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              G++G       K+ I+G  N+GKS+L N L+  ++AIV+D PGTTRD +       G
Sbjct: 164 ---GEVGIESGADIKVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNG 220

Query: 267 YLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISF-- 316
            + ++ DTAGIR     ++IVE   + R    ++  D++ LL ++  K     K+I+   
Sbjct: 221 KVFEVVDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEKLTSQDKKIAHYV 280

Query: 317 -PKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
             K    + + +K DL       ++ L S   
Sbjct: 281 TKKGKGIVIVFSKWDLVDESKGYFEALKSHVK 312



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 16/155 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNI--DFIFIGTKSDLYS 333
            D + K  +++    +E  DLILL+ +IN       + I   +      + +  K D   
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDINEILLEDYQIIERLRKYSSKVVLVLNKVDTKD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIK 359
                ++            S+    G+ +L + +K
Sbjct: 126 KECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFLK 160


>gi|312148299|gb|ADQ30958.1| ribosome-associated GTPase EngA [Borrelia burgdorferi JD1]
          Length = 433

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 17/212 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +   S ++  +  +   K     +    +L F     V     + +     FLK ++   
Sbjct: 107 LRKYSSKVVLVLNKVDTKDKECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFLKVEV--- 163

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              G++G       K+ I+G  N+GKS+L N L+  ++AIV+D PGTTRD +       G
Sbjct: 164 ---GEVGIESGADIKVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNG 220

Query: 267 YLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISF-- 316
            + ++ DTAGIR     ++IVE   + R    ++  D++ LL ++  K     K+I+   
Sbjct: 221 KVFEVVDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEKLTSQDKKIAHYV 280

Query: 317 -PKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
             K    + + +K DL       ++ L S   
Sbjct: 281 TKKGKGIVIVFSKWDLVDEPKGYFEALKSHVK 312



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 16/155 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDIKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNI--DFIFIGTKSDLYS 333
            D + K  +++    +E  DLILL+ +IN       + I   +      + +  K D   
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDINEILLEDYQIIERLRKYSSKVVLVLNKVDTKD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIK 359
                ++            S+    G+ +L + +K
Sbjct: 126 KECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFLK 160


>gi|27379163|ref|NP_770692.1| GTP-binding protein EngA [Bradyrhizobium japonicum USDA 110]
 gi|37999663|sp|Q89MZ0|DER_BRAJA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|27352313|dbj|BAC49317.1| GTP-binding protein [Bradyrhizobium japonicum USDA 110]
          Length = 460

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 84/203 (41%), Gaps = 32/203 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E      ++ I+G  NAGKS+L N L  ++  + +   GTTRD + ++++ +G   ++ D
Sbjct: 182 EAATRPIRVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTRDSIAVEINWKGREFRVFD 241

Query: 274 TAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------F 322
           TAG+R    I    EK  +      V  A++++L+ +  ++ E    +  D         
Sbjct: 242 TAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMMDTQNRFEEQDLRIADLVEREGRAL 301

Query: 323 IFIGTKSDL--------YSTYTEEYDHL-----------ISSFTGEGLEELINKIKSILS 363
           +    K DL         S    + DH            +S   GEG++ L+  I+   +
Sbjct: 302 VLAANKWDLMETKGGGAISGLRRDADHWLPQVKGVPIVAVSGLMGEGIDRLMQAIQDAYA 361

Query: 364 NKFKKLPFSIPSHKRHLYHLSQT 386
              +++  S  +  R      Q 
Sbjct: 362 VWNRRVSTSALN--RWFEQAVQA 382



 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 18/163 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I I+G  N GKS+LFN L  + +A+V D+PG TRD    +  L      I DTAG+ E
Sbjct: 3   FTIAIIGRPNVGKSTLFNRLVGQKLALVDDLPGVTRDRREGEARLGDLEFTIIDTAGLDE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
                      ++T   +  AD +  + +          +  + +   N   + +  KS+
Sbjct: 63  GAKGSLTARMQEQTEAAIAQADALFFVVDARIGLTPTDRAFADFARRANKPVLLVANKSE 122

Query: 331 ---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                                IS+  GEG+ EL + +  ++  
Sbjct: 123 GKHGDAGAMEAFALGLGDPIQISAEHGEGMGELYDALAKLMPE 165


>gi|288958550|ref|YP_003448891.1| GTP-binding protein [Azospirillum sp. B510]
 gi|288910858|dbj|BAI72347.1| GTP-binding protein [Azospirillum sp. B510]
          Length = 464

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 18/157 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + +V++G  N GKS+LFN LA K +A+V D PG TRD  +    + G    + DTAG+ +
Sbjct: 3   FTVVLVGRPNVGKSTLFNRLAGKKLALVDDTPGVTRDWRSAPAHVGGLSFTVVDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD +E    ++T   +  AD+ L + +  +           +        + +  K++
Sbjct: 63  VTDDSLEARMRRQTEQALARADVALFIIDARAGVTPLDRHFANLLRRGKTPVLLVANKTE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKI 358
             +     ++           +S+  GEG+ +L+  +
Sbjct: 123 GRAGQPGMFEAYELGLGDPIPLSAEHGEGMADLVEAL 159



 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 81/199 (40%), Gaps = 29/199 (14%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            Q +  E +    +I I+G  N GKS+L N+L  ++  +     G TRD +T+D +    
Sbjct: 186 DQPEPEEDLSKPIQIAIVGRPNVGKSTLLNSLLGEERVLTGPEAGMTRDAITVDWEWRDR 245

Query: 268 LVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK--- 318
             K+ DTAG+R     D+ VEK  +  +   +  A++++L+ +  +   K++++  +   
Sbjct: 246 RFKLVDTAGMRRRARVDEKVEKLAVADSLRVIRMANVVVLVVDAGAILDKQDLTIARLVI 305

Query: 319 --NIDFIFIGTKSDLYST------------------YTEEYDHLISSFTGEGLEELINKI 358
                 +    K D                              IS+  G  LE L++ +
Sbjct: 306 SEGRALVIAVNKWDTVDDRAMALRQVEDKLQAALGYIKGVTVVTISALKGHKLETLLDGV 365

Query: 359 KSILSNKFKKLPFSIPSHK 377
               +   +++P +  +  
Sbjct: 366 LETYTVWNRRIPTAQLNRW 384


>gi|223888990|ref|ZP_03623581.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 64b]
 gi|223885806|gb|EEF56905.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 64b]
          Length = 433

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 17/212 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +   S ++  +  +   K     +    +L F     V     + +     FLK ++   
Sbjct: 107 LRKYSSKVVLVLNKVDTKDKECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFLKVEV--- 163

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              G++G       K+ I+G  N+GKS+L N L+  ++AIV+D PGTTRD +       G
Sbjct: 164 ---GEVGIESGADIKVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNG 220

Query: 267 YLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISF-- 316
            + ++ DTAGIR     ++IVE   + R    ++  D++ LL ++  K     K+I+   
Sbjct: 221 KVFEVVDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEKLTSQDKKIAHYV 280

Query: 317 -PKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
             K    + + +K DL       ++ L S   
Sbjct: 281 TKKGKGIVIVFSKWDLVDESKGYFEALKSHVK 312



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 16/155 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESAYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNI--DFIFIGTKSDLYS 333
            D + K  +++    +E  DLILL+ +IN       + I   +      + +  K D   
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDINEILLEDYQIIERLRKYSSKVVLVLNKVDTKD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIK 359
                ++            S+    G+ +L + +K
Sbjct: 126 KECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFLK 160


>gi|153941135|ref|YP_001392222.1| GTP-binding protein Era [Clostridium botulinum F str. Langeland]
 gi|189037261|sp|A7GHG2|ERA_CLOBL RecName: Full=GTPase Era
 gi|152937031|gb|ABS42529.1| GTP-binding protein Era [Clostridium botulinum F str. Langeland]
 gi|295320220|gb|ADG00598.1| GTP-binding protein Era [Clostridium botulinum F str. 230613]
          Length = 296

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 24/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NA+ K+ ++IV+  P TTR+ +   L  + Y +   DT GI +  
Sbjct: 7   VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             + +  +K     +++ DL+L L   + K         E      +    +  K D   
Sbjct: 67  HKLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKIDENP 126

Query: 331 ---------LYSTYTE-EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    +YS   E E    IS+  G+ ++ L   +   +    +  P  +   +   
Sbjct: 127 QEKVAETLKIYSELMEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIIDQNER 186

Query: 381 YHLSQTVRYLEMASLNE---KDCGLDIIA 406
           + +++ VR   +  L+E       ++I+ 
Sbjct: 187 FIVAEIVREKALRLLSEEVPHGIAVEILQ 215


>gi|296133911|ref|YP_003641158.1| GTP-binding protein Era [Thermincola sp. JR]
 gi|296032489|gb|ADG83257.1| GTP-binding protein Era [Thermincola potens JR]
          Length = 300

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 25/222 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + ++G  N GKS+L N    + +AI+++ P TTR+ +   L  E Y V  
Sbjct: 1   MAEGFKSGF-VALIGRPNVGKSTLMNKFLGQKLAIMSEKPQTTRNKINGVLTGENYQVIF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNIDF 322
            DT GI +    + +  ++  +  ++  DLIL L E   ++         E         
Sbjct: 60  LDTPGIHKPKHKLGEYMVQVAYNALKEVDLILFLVEATEQEVGTGDRYILEQLQEIKTPV 119

Query: 323 IFIGTKSDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKL 369
           I +  K DL            YT          +S+ TG  L+ L++ I   L    K  
Sbjct: 120 ILVINKIDLVQKDAILPVIDAYTARKQFAEVVPVSAITGANLQALLDNILKYLPEGPKYY 179

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           P  I S +   + +++ +R  ++  L   +     +A ++  
Sbjct: 180 PDDIISDQPERFVMAELIRE-KVLELTRDEVPHS-VAVDIEE 219


>gi|224370723|ref|YP_002604887.1| GTP-binding protein EngA [Desulfobacterium autotrophicum HRM2]
 gi|259645871|sp|C0QA05|DER_DESAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|223693440|gb|ACN16723.1| EngA2 [Desulfobacterium autotrophicum HRM2]
          Length = 492

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 13/144 (9%)

Query: 208 SQGKLGE--IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           +  + GE         I + G  N GKSSL N L  K   +V+ +PGTTRD + + ++  
Sbjct: 174 AGSEQGEPDASEQEICIAVAGRPNVGKSSLINRLFGKSRVVVSHVPGTTRDSVDLSIERN 233

Query: 266 GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-- 317
           G   ++ DTAGIR    +    EK  I ++   ++  D+ L+L + +   + ++I+    
Sbjct: 234 GRRFRLIDTAGIRRKGKVRERIEKYSILKSLKSLDQCDVALILIDADEGVTDQDITIAGY 293

Query: 318 ---KNIDFIFIGTKSDLYSTYTEE 338
              +    +F+  K DL     ++
Sbjct: 294 AQDRGCGALFLINKWDLLDEDRKD 317



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           + ++G  N GKS+LFN + +   A+V D PG TRD   +D         + DT G +   
Sbjct: 5   VALVGRPNVGKSTLFNRITRSRNALVDDFPGVTRDRHYVDAVWNERPFTLVDTGGFLLSD 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           DD   +E      L +E+AD++ L+ +  +          +I    +    F+  K + +
Sbjct: 65  DDFFAREIRGHVELAIEDADIVALVLDGRAGISPFDRDLADILRRTSKPVFFLVNKVENH 124

Query: 333 STYTE---------EYDHLISSFTGEGLEELINKIKSILS 363
               E         E  + +S+  G G+E  ++ + ++  
Sbjct: 125 KQREELLEFYSLGIEKFYPMSAEHGIGVEPFLDDMVALFP 164


>gi|108804343|ref|YP_644280.1| GTP-binding protein Era [Rubrobacter xylanophilus DSM 9941]
 gi|108765586|gb|ABG04468.1| GTP-binding protein Era [Rubrobacter xylanophilus DSM 9941]
          Length = 301

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 26/214 (12%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            + GE  R+G+ + ++G  N GKS+L N L  + ++I++  P TTR  +    +  GY  
Sbjct: 2   AREGEGFRSGF-VAVVGRPNVGKSTLVNRLVGQKISIISSRPQTTRSPIRGVRNGPGYQA 60

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-----------EISFPK 318
              DT G ++  D +     +R    +  +D++L + + +  K           ++    
Sbjct: 61  VFVDTPGSQKPRDTLRARMQERVLDSLSESDVVLFMLDASQAKGGVGRGDRFVADLVARS 120

Query: 319 NIDFIFIGTKSDLYSTYTE--------------EYDHLISSFTGEGLEELINKIKSILSN 364
               I    K DL     +              E   LIS+  G  +E L++ +  +L  
Sbjct: 121 RTPAIAAINKVDLLPRRDDALPIVDEVRGLADWEDVFLISATAGTNIEPLMDAVVRLLPQ 180

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
             +  P  + +       L++ +R   +  L E+
Sbjct: 181 GPRYFPEGVVTDYPETLILAEYIREKALEVLREE 214


>gi|224533510|ref|ZP_03674099.1| ribosome-associated GTPase EngA [Borrelia burgdorferi CA-11.2a]
 gi|224513183|gb|EEF83545.1| ribosome-associated GTPase EngA [Borrelia burgdorferi CA-11.2a]
          Length = 433

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 17/192 (8%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
              +    +L F     V     + +     FLK ++      G++G       K+ I+G
Sbjct: 127 ECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFLKVEV------GEVGIESGADIKVGIIG 180

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDI 283
             N+GKS+L N L+  ++AIV+D PGTTRD +       G + ++ DTAGIR     ++I
Sbjct: 181 KPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRRARVNEI 240

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK-----KEISF---PKNIDFIFIGTKSDLYSTY 335
           VE   + R    ++  D++ LL ++  K     K+I+     K    + + +K DL    
Sbjct: 241 VEYYSVNRALKVIDMVDIVFLLIDVQEKLTSQDKKIAHYVTKKGKGIVIVFSKWDLVDES 300

Query: 336 TEEYDHLISSFT 347
              ++ L S   
Sbjct: 301 KGYFEALKSHVK 312



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 16/155 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNI--DFIFIGTKSDLYS 333
            D + K  +++    +E  DLILL+ +IN       + I   +      + +  K D   
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDINEILLEDYQIIERLRTYSSKVVLVLNKVDTKD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIK 359
                ++            S+    G+ +L + +K
Sbjct: 126 KECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFLK 160


>gi|216264686|ref|ZP_03436678.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 156a]
 gi|215981159|gb|EEC21966.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 156a]
          Length = 433

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 17/212 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +   S ++  +  +   K     +    +L F     V     + +     FLK ++   
Sbjct: 107 LRKYSSKVVLVLNKVDTKDKECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFLKVEV--- 163

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              G++G       K+ I+G  N+GKS+L N L+  ++AIV+D PGTTRD +       G
Sbjct: 164 ---GEVGIESGADIKVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNG 220

Query: 267 YLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISF-- 316
            + ++ DTAGIR     ++IVE   + R    ++  D++ LL ++  K     K+I+   
Sbjct: 221 KVFEVVDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEKLTSQDKKIAHYV 280

Query: 317 -PKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
             K    + + +K DL       ++ L S   
Sbjct: 281 TKKGKGIVIVFSKWDLVDEPKGYFEALKSRVK 312



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 16/155 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNI--DFIFIGTKSDLYS 333
            D + K  +++    +E  DLILL+ +IN       + I   +      + +  K D   
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDINEILLEDYQIIERLRKYSSKVVLVLNKVDTKD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIK 359
                ++            S+    G+ +L + +K
Sbjct: 126 KECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFLK 160


>gi|312139844|ref|YP_004007180.1| gtpase [Rhodococcus equi 103S]
 gi|325674279|ref|ZP_08153968.1| ribosome-associated GTPase EngA [Rhodococcus equi ATCC 33707]
 gi|311889183|emb|CBH48497.1| GTPase [Rhodococcus equi 103S]
 gi|325554959|gb|EGD24632.1| ribosome-associated GTPase EngA [Rhodococcus equi ATCC 33707]
          Length = 481

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 113/283 (39%), Gaps = 31/283 (10%)

Query: 125 LLEAESLADLISSETEMQR--RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +  A+++  ++ +          ++  +    + +     +K+   R+  EA   +S   
Sbjct: 119 MNTADAILLVVDAVVGATATDEAAVRVLRRSKTPVIL-VANKVDDARTEAEAAALWSLGL 177

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAK 241
              +  S         L +++   + +         G + + ++G  N GKSSL N L+ 
Sbjct: 178 GEPHMVSATHGRGTGDLLDEVLRVLPETPREGTGGGGPRRVALVGKPNVGKSSLLNKLSG 237

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVEN 298
            + ++V D+ GTT D +   ++L G + K  DTAG+R+        E     RT   +E 
Sbjct: 238 DERSVVHDVAGTTVDPVDSLVELGGKVWKFVDTAGLRKKVSHASGHEFYASLRTKSAIEA 297

Query: 299 ADLILLLKEINSK------KEISFPKNIDFIFIG--TKSDLYST-----YTEEYD----- 340
           A++ +LL + +        + +S   +     +    K DL          +E D     
Sbjct: 298 AEVAILLIDASKPITEQDLRVLSMVADTGRALVLAFNKWDLVDEDRRLMLEKEIDRELVR 357

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                   IS+ TG  +++L+  + + L +  K++P    ++ 
Sbjct: 358 VPWAQRVNISAHTGRAVQKLVPALDTALESWDKRIPTGRLNNW 400



 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 20/186 (10%)

Query: 207 ISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           ++    GE       +    ++G  N GKS+L N +  +  A+V DIPG TRD ++ D +
Sbjct: 27  LADFLDGEDAEEHVAVPTLAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYDAN 86

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEIS 315
             G    + DT G       +++   ++  L +  AD ILL+ +          +   + 
Sbjct: 87  WAGRRFMVQDTGGWEPDAKGLQQSVARQAELAMNTADAILLVVDAVVGATATDEAAVRVL 146

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEY---------DHLISSFTGEGLEELINKIKSILSNKF 366
                  I +  K D   T  E            H++S+  G G  +L++++  +L    
Sbjct: 147 RRSKTPVILVANKVDDARTEAEAAALWSLGLGEPHMVSATHGRGTGDLLDEVLRVLPETP 206

Query: 367 KKLPFS 372
           ++    
Sbjct: 207 REGTGG 212


>gi|149194255|ref|ZP_01871352.1| GTP-binding protein Era [Caminibacter mediatlanticus TB-2]
 gi|149135430|gb|EDM23909.1| GTP-binding protein Era [Caminibacter mediatlanticus TB-2]
          Length = 293

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/218 (25%), Positives = 92/218 (42%), Gaps = 21/218 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L N L  + +A+V+     +R  +   +      + + DT G+ E +
Sbjct: 7   VGIIGKPNAGKSTLLNWLLGEKIALVSPKANASRKRVNAIVMHNDDQIILLDTPGLHEKE 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL---- 331
            ++ K  +K     + ++DL+L L ++    E          KNI  I + TK+DL    
Sbjct: 67  KLLNKFMLKEALKALSDSDLVLFLADVRDDLEGYEWFLELNKKNIPHIVVLTKTDLVNEE 126

Query: 332 -YSTYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                 EEY           IS+  G+G EEL+++I   L          I S +     
Sbjct: 127 EVKNKIEEYKKIGKALVIIPISAIEGKGKEELLDEIVKYLPEHPYYYDPEIISTENIRDI 186

Query: 383 LSQTVRYLEMASL-NEKDCGLDIIAENLRLASVSLGKI 419
             + +R      L +E     DI+ E +     +L KI
Sbjct: 187 YKELIREALFEKLGDEIPYQTDILIEKIEE-FENLDKI 223


>gi|15645453|ref|NP_207627.1| GTP-binding protein EngA [Helicobacter pylori 26695]
 gi|3915379|sp|O25505|DER_HELPY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|2313967|gb|AAD07883.1| GTP-binding protein homologue (yphC) [Helicobacter pylori 26695]
          Length = 458

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 35/218 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L++ 
Sbjct: 128 DKEKERAYAFSSF-----------------GMPKSFNISVSHNRGISALIDAVLSALDLN 170

Query: 394 SLNEKDCGLDIIAENLRLASVSLGK------ITGCVDV 425
            + E+D   DI+ E+L   + +L +      I G V+V
Sbjct: 171 QIIEQDLDADIL-ESLETPNNALEEEIIQVGIIGRVNV 207



 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 26/204 (12%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L  DI   +       +     ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D
Sbjct: 175 QDLDADILESLETPNNA-LEEEIIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTID 233

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK--- 311
            +   + +    +   DTAGIR    I  +EK  ++RT   +E + + LL+ ++++    
Sbjct: 234 PIDETILIGDQKICFVDTAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVE 293

Query: 312 --KEISFPKNID---FIFIGTKSDLYSTYTEEYD---------------HLISSFTGEGL 351
             ++IS   +      I +  K D+     EE                    S      +
Sbjct: 294 LDEKISSLADKHSLGIILVLNKWDIRYAPYEEIIATLKRKFRFLEYAPVITTSCLKARHI 353

Query: 352 EELINKIKSILSNKFKKLPFSIPS 375
           +E+ +KI  +     K++P S+ +
Sbjct: 354 DEIKHKIIEVYECFSKRIPTSLLN 377


>gi|326316284|ref|YP_004233956.1| ribosome-associated GTPase EngA [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373120|gb|ADX45389.1| ribosome-associated GTPase EngA [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 447

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 81/197 (41%), Gaps = 32/197 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG+R 
Sbjct: 180 IRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQQFELIDTAGLRR 239

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTK 328
                + +EK  + +T   +E+A+++LLL +      +    I+          +    K
Sbjct: 240 KGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVLAVNK 299

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D    Y  +                  H IS+   +GL  L   I     +   K+P  
Sbjct: 300 WDAVDDYGRQMLERSIETRLSFLKFASLHFISAKKRQGLGPLWTSIAQAHKSATCKMPTP 359

Query: 373 IPSHKRHLYHLSQTVRY 389
           + +       L + V++
Sbjct: 360 VLTR-----LLLEAVQF 371



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD    +  L  +   + DT G   + 
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGKLGKHEYIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLY 332
              + +E  K+T   V  AD+++ + +  +                    + +G K++  
Sbjct: 65  SSGIYREMAKQTQQAVAEADVVIFVVDARAGLSAQDHDIANYLRRLGKPCLLVGNKAEGM 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
               +  +            S+  G+G+  L+      L 
Sbjct: 125 REGAQLAEFYELGLGEVLPVSAAHGQGVRSLLETALETLQ 164


>gi|157827640|ref|YP_001496704.1| GTP-binding protein EngA [Rickettsia bellii OSU 85-389]
 gi|166225850|sp|A8GXR7|DER_RICB8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157802944|gb|ABV79667.1| GTP-binding protein EngA [Rickettsia bellii OSU 85-389]
          Length = 452

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 15/157 (9%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G  E  D 
Sbjct: 13  LVGRPNVGKSTLFNRLSMRKKAIVHDLPGVTRDRKYTDGRIGSFEFSLIDTPGFEENPDS 72

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTY 335
             K  +++T   +  ADLI  + +  S          +     N   + +  K +    +
Sbjct: 73  FGKRLMEQTTKAINEADLICFMVDSRSGILPDDKLLSDFVRKYNKPAVLVINKCEKAFDF 132

Query: 336 TEEYDH-------LISSFTGEGLEELINKIKSILSNK 365
            +EY          IS+  G G+ +L ++I + L  +
Sbjct: 133 DKEYYKLGFDSMVAISAEHGTGMIDLYDEIIAKLPEE 169



 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 98/251 (39%), Gaps = 28/251 (11%)

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSET-----EMQRRLSMEGMSGELSSLYGQWIDK 164
           P  F +R  E     + EA+ +  ++ S +     +      +   +     +  +    
Sbjct: 70  PDSFGKRLMEQTTKAINEADLICFMVDSRSGILPDDKLLSDFVRKYNKPAVLVINKCEK- 128

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI-IRNGYK-- 221
                +F      +    D     S E    ++ L ++I + + +    E  I +  K  
Sbjct: 129 -----AFDFDKEYYKLGFDSMVAISAEHGTGMIDLYDEIIAKLPEEDSAEAEIHDPIKGD 183

Query: 222 ---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
              IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +G  +K+ DTAG+R
Sbjct: 184 CLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKGNHIKLIDTAGLR 243

Query: 279 ET---DDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFP-----KNIDFIFIGT 327
           +     + +EK         ++ A+ ++L+ +  S    ++++       +    + +  
Sbjct: 244 KKATITESLEKLSASDAINSIKFANTVILMIDALSPLKQQDLNIASHVANEGRSIVIVVN 303

Query: 328 KSDLYSTYTEE 338
           K DL     +E
Sbjct: 304 KWDLIKESEKE 314


>gi|225018908|ref|ZP_03708100.1| hypothetical protein CLOSTMETH_02859 [Clostridium methylpentosum
           DSM 5476]
 gi|224948314|gb|EEG29523.1| hypothetical protein CLOSTMETH_02859 [Clostridium methylpentosum
           DSM 5476]
          Length = 397

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 83/172 (48%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  N+GKSSL NA+  +++A+V+D+ GTT D +   +++ G     + DTAG
Sbjct: 11  NRLHIAIFGKRNSGKSSLINAITGQEIALVSDVAGTTTDPVYKAMEIHGIGPCMLIDTAG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK-EINSKKEISFP-----KNIDFIFIGTKSD 330
             +T  + E+  +++T   ++  D+ ++L  +  +  E  +      + I  + +  K D
Sbjct: 71  FDDTGKLGEQR-VEKTRQAMDKTDVAIVLFGDCYTDYEQRWIEELNKRKIPVVAVINKGD 129

Query: 331 LYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +     E   H+           S+ +  G+ ELI+++   L   F++   +
Sbjct: 130 ILENIPEISQHVWEKFGLKPIVTSALSRSGIRELIDQLIRALPEDFEQKSIT 181


>gi|239815182|ref|YP_002944092.1| GTP-binding protein EngA [Variovorax paradoxus S110]
 gi|259645888|sp|C5CXH0|DER_VARPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|239801759|gb|ACS18826.1| small GTP-binding protein [Variovorax paradoxus S110]
          Length = 447

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 82/201 (40%), Gaps = 32/201 (15%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +    K+ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTA
Sbjct: 177 VNKPIKLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFERNGQRFELIDTA 236

Query: 276 GIRETD---DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIF 324
           G+R      + +EK  + +T   +E+A ++LLL +      +    I+          + 
Sbjct: 237 GLRRKGKVFEAIEKFSVVKTLQAIESASVVLLLLDATQGVTDQDAHIAGYILESGRAVVI 296

Query: 325 IGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKK 368
              K D   +Y  E                  H IS+   +GL  +   I     +  +K
Sbjct: 297 AINKWDAVDSYQREQIQRQIETRLPFLKFASLHFISAIKRQGLGPVWQAIAQAHKSATRK 356

Query: 369 LPFSIPSHKRHLYHLSQTVRY 389
           +   + +       L + V++
Sbjct: 357 MSTPVLTR-----LLLEAVQF 372



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 18/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L +   AIV D  G TRD    +  L  +   + DT G   + 
Sbjct: 5   VALVGRPNVGKSTLFNRLTQTRDAIVADFAGLTRDRHYGNGRLGKHEFIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD-- 330
              + KE  K+T   V  AD+++ + +     S ++              +    K++  
Sbjct: 65  GSGIYKEMAKQTRQAVAEADVVIFVVDAREGLSAQDHDIANELRRLGKPCVLAANKAEGM 124

Query: 331 -----LYSTYTEEYD--HLISSFTGEGLEELIN 356
                L   Y   +   H +S+  G+G+ +L+ 
Sbjct: 125 HDGTKLVDFYELGFGDVHGVSAAHGQGMRDLVE 157


>gi|152981185|ref|YP_001353813.1| GTP-binding protein EngA [Janthinobacterium sp. Marseille]
 gi|166198722|sp|A6SZW6|DER_JANMA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|151281262|gb|ABR89672.1| GTP-binding protein EngA [Janthinobacterium sp. Marseille]
          Length = 447

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+L N L  ++  I  D+PGTTRD + I  + +G    + DTAGIR 
Sbjct: 181 IKLAIVGRPNVGKSTLVNTLLGEERVIAFDLPGTTRDSIEIPFERDGKHYTLIDTAGIRR 240

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
                + +EK  + +T   +  A+++LLL +  ++++IS        FI           
Sbjct: 241 RGKVFEAIEKFSVVKTLQSISEANVVLLLLD--AQQDISEQDAHIAGFILESGRALVVGV 298

Query: 337 EEYDHLISSFTGEGLEELINKI 358
            ++D L S    E   +L  K+
Sbjct: 299 NKWDGLTSDRRDEIKMDLERKL 320



 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 18/177 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALIGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            + +  E  K+T   V  AD+++ + +             +         + +  K++  
Sbjct: 65  KEGIMHEMAKQTKQAVAEADVVIFIVDGRQGLTPHDKTITDFLRKSGRSVMLVVNKAEGM 124

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            Y+T T ++        ++IS+  G+G+ +L+ +  +I   +      +  S+ R +
Sbjct: 125 KYTTVTADFYELGMGDPYVISAAHGDGVNDLVEEALNIAFAQRPPEEEAPASNDRSI 181


>gi|299530502|ref|ZP_07043922.1| GTP-binding protein EngA [Comamonas testosteroni S44]
 gi|298721478|gb|EFI62415.1| GTP-binding protein EngA [Comamonas testosteroni S44]
          Length = 446

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 27/187 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +   ++ + G  NAGKS+L N    ++  +  D+PGTTRD +T+  +  G   ++ DTAG
Sbjct: 178 QKPVRLAVAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAITVPFERNGQKFELIDTAG 237

Query: 277 IRETD---DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFI 325
           +R      + +EK  + +T   +E A+++LLL +      +    I+          +  
Sbjct: 238 LRRKGKVFEAIEKFSVVKTLQAIEGANVVLLLIDATQGVTDQDAHIAGYILESGRSVVLG 297

Query: 326 GTKSDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K D    Y  +                  H IS+   +GLE L   I         K+
Sbjct: 298 INKWDAVDDYQRQMLERSIETRLSFLKFAPLHFISAQKRQGLEPLWKSIIQAHRAATCKM 357

Query: 370 PFSIPSH 376
           P  + + 
Sbjct: 358 PTPVLTR 364



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 80/215 (37%), Gaps = 23/215 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD          +   + DT G   + 
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDLY 332
              + KE  K+T   V  AD+++ + +  +       EI           I +  K++  
Sbjct: 65  SRGIFKEMAKQTQQAVAEADVVIFVLDARAGLSGQDHEIGNYLRRLGKPTILVANKAEGM 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
               +  +            S+  G+G+  L++    +L+    +        ++ +   
Sbjct: 125 KDGVQLSEFYELGLGEVVPVSAAHGQGVRSLVDAALGLLNLPEPEEEVFGEEDQKPVRLA 184

Query: 384 SQTVRYLEMASLNEKDCGLD-IIAENL----RLAS 413
                    ++L     G + ++A ++    R A 
Sbjct: 185 VAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAI 219


>gi|157828884|ref|YP_001495126.1| GTP-binding protein EngA [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|166225852|sp|A8GT93|DER_RICRS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157801365|gb|ABV76618.1| GTP-binding protein EngA [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 447

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDEHP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSDLYS 333
           + + K  I++T   +  ADLI  + +       + K   SF +  N   I +  K +   
Sbjct: 66  NSMGKRLIEQTTKAILEADLICFMVDARSGILPDDKLLSSFVRKYNKPAILVVNKCEKAF 125

Query: 334 TYTEEY-------DHLISSFTGEGLEELINKIKSILSNK 365
            + +EY          IS+  G GL +L ++I + L  +
Sbjct: 126 DFDKEYYKLGFDSMIAISAEHGTGLIDLYDEIIAKLPEE 164



 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 114/303 (37%), Gaps = 44/303 (14%)

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSET-----EMQRRLSMEGMSGELSSLYGQWIDK 164
           P    +R  E     +LEA+ +  ++ + +     +      +   +     +  +    
Sbjct: 65  PNSMGKRLIEQTTKAILEADLICFMVDARSGILPDDKLLSSFVRKYNKPAILVVNKCEKA 124

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK----NDISSHISQGKLGEIIRNGY 220
               + + +   D       ++ +    L D +  K      I ++I+    G+ ++   
Sbjct: 125 FDFDKEYYKLGFDSMIAISAEHGTGLIDLYDEIIAKLPEEESIETNIADPIKGDCLQ--- 181

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K+ DTAG+R+ 
Sbjct: 182 -IVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240

Query: 281 D---DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFP-----KNIDFIFIGTKS 329
               + +EK     T   ++ A+ ++L+ +  +    ++++       +    + +  K 
Sbjct: 241 STITESLEKLSASDTINSIKLANTVILMIDALAPLKQQDLNIASHVVNEGRSIVIVVNKW 300

Query: 330 DLYSTYTEEYDH--------------------LISSFTGEGLEELINKIKSILSNKFKKL 369
           DL     +E                        IS+   + +E++++    I     KK+
Sbjct: 301 DLVKESEKEAFQEEFYYQINTHLPQVKGIPVLFISAINKQNIEQVLDACLKIYKIWNKKI 360

Query: 370 PFS 372
             S
Sbjct: 361 TTS 363


>gi|328869018|gb|EGG17396.1| GTP-binding protein engA [Dictyostelium fasciculatum]
          Length = 770

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 101/257 (39%), Gaps = 18/257 (7%)

Query: 122 KIDLLEAE-SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180
           +  + + +  LA ++ +  +  + + +     +   +   +   +    +       F  
Sbjct: 212 RTGITQVDRDLARMLRNRQQKGQHVLVVANKADSHMMIEGFETDMKTTLTRFGLGEPFPM 271

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
              +      ++L  I  L  D+   +        +    KI I+G  NAGKSSL N + 
Sbjct: 272 S-SIHGHGVLDLLERITKLLPDMPLELDDPS----LPGAIKISIVGQPNAGKSSLLNRII 326

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
           +++ +IV+D+PGTT D +   L     + + + DTAGIR         EK  +      +
Sbjct: 327 EQERSIVSDVPGTTHDPVDCHLVWRDKHDLTLIDTAGIRRRATHRVGLEKSSVLWAMKAI 386

Query: 297 ENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           E + ++L + +     +++++        +N   I +  K DLY+               
Sbjct: 387 ERSHVVLFVIDSTVGLTEQDLKIAGFITEQNKSVIILVNKWDLYTKNKRTAQKERDQAYF 446

Query: 349 EGLEELINKIKSILSNK 365
              ++  N +  I+ +K
Sbjct: 447 HQYQDRFNFLDDIIKDK 463



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 30/180 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV-AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           I ++G  N GKS+LFN + +    A+V DIPGTTRD    +  + G   ++ DT G+   
Sbjct: 120 IALVGKPNVGKSTLFNRIVESQRQALVEDIPGTTRDRYYGEAIVYGKQFQVVDTGGMVGD 179

Query: 278 RETDDIVEKEGIK-RTFLEVENADLILLLKEINS-----KKEISFP------KNIDFIFI 325
             T      + IK +  + ++ AD+I+ + +  +      ++++        K    + +
Sbjct: 180 STTQQDQFSQMIKTQATIAMDEADVIVFVVDYRTGITQVDRDLARMLRNRQQKGQHVLVV 239

Query: 326 GTKSDLY--------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             K+D +              + +       +SS  G G+ +L+ +I  +L +   +L  
Sbjct: 240 ANKADSHMMIEGFETDMKTTLTRFGLGEPFPMSSIHGHGVLDLLERITKLLPDMPLELDD 299


>gi|153953550|ref|YP_001394315.1| GTP-binding protein Era [Clostridium kluyveri DSM 555]
 gi|219854172|ref|YP_002471294.1| hypothetical protein CKR_0829 [Clostridium kluyveri NBRC 12016]
 gi|189037262|sp|A5N6N6|ERA_CLOK5 RecName: Full=GTPase Era
 gi|254783294|sp|B9E055|ERA_CLOK1 RecName: Full=GTPase Era
 gi|146346431|gb|EDK32967.1| Predicted GTP-binding protein [Clostridium kluyveri DSM 555]
 gi|219567896|dbj|BAH05880.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 293

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 25/216 (11%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +I++G+ I I+G  N GKS+L N++  + ++IV+  P TTR+ +   L  + + +   DT
Sbjct: 1   MIKSGF-ITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNSIQTILTRDDFQLIFVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
            GI +    +    +K     V++ DLIL L   + +         E    +NI    + 
Sbjct: 60  PGIHKPKHKLGNYMVKVAESSVKDVDLILFLITPDVEVGKGDRYILEQLKKENIPVFLVV 119

Query: 327 TKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D             Y+E +D      IS+   + ++EL+  +   +    K  P  +
Sbjct: 120 NKIDENPQEKVAQTLKNYSEIFDFAEIIPISALKQKNVKELVELMVKYMPEGPKYYPDDM 179

Query: 374 PSHKRHLYHLSQTVRYLEMASLNE---KDCGLDIIA 406
            + K+  + +S+ +R   +  L++       +DI++
Sbjct: 180 ITDKQEKFVVSEIIREKALRLLSKEVPHGIAVDILS 215


>gi|187734830|ref|YP_001876942.1| small GTP-binding protein [Akkermansia muciniphila ATCC BAA-835]
 gi|238691864|sp|B2UMV5|DER_AKKM8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|187424882|gb|ACD04161.1| small GTP-binding protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 464

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 11/134 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            K+ ++G  NAGKSSL NA+ +    IV+++ GTTRD + +    +G    + DTAG+R 
Sbjct: 190 IKVAVVGRPNAGKSSLVNAILRDRRTIVSNVAGTTRDAIDVPYLHDGQPYVLIDTAGMRP 249

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
               D  VE     R+   +  AD+ LL+ +I +           I   +    I I  K
Sbjct: 250 RSRRDTSVEVFSAMRSEKAIRRADICLLVIDIAAGITQQDRRIAGIIAEEGKPCIIIVNK 309

Query: 329 SDLYSTYTEEYDHL 342
            DL+       D +
Sbjct: 310 FDLFHPNASRKDRM 323



 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 20/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           I I+G  N GKS++FN +A + +AIV D PG TRD L+    +     KI DT GI  R 
Sbjct: 7   IAIVGRPNVGKSAIFNRMAGRRIAIVHDEPGVTRDRLSAPCKITDRACKIMDTGGIGARL 66

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD- 330
           +D   E+   +   + ++ ADLIL + +          S  +     +I  I +  K+D 
Sbjct: 67  SDGFAEQVEAE-ADIAIKTADLILFVLDCRDHLTPIDQSIADHLRKSDIPVILLLNKADH 125

Query: 331 ------LYSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKL 369
                 L       +D    +S+  G G  EL +++   L  K   L
Sbjct: 126 EKQDLNLGEFAGLGFDDHIFLSAAHGRGFSELASRLDGFLKQKGAPL 172


>gi|145219270|ref|YP_001129979.1| GTP-binding protein EngA [Prosthecochloris vibrioformis DSM 265]
 gi|189037154|sp|A4SDB8|DER_PROVI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145205434|gb|ABP36477.1| small GTP-binding protein [Chlorobium phaeovibrioides DSM 265]
          Length = 436

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 11/149 (7%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L + I   + +    +      ++ ++G  N GKSS  NAL   +  IV+DIPGTTRD
Sbjct: 154 ADLLDAILLEMPESDADQEEDGAIRLAVVGRPNVGKSSFVNALLGNNRQIVSDIPGTTRD 213

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEIN---S 310
            +            + DTAG+R+   I   +E     R+   +E  ++++++ +      
Sbjct: 214 AIDTRFTRNQQDFLLIDTAGLRKRTKISAGIEYYSSLRSEKAIERCEVVMVMIDAGPGIE 273

Query: 311 KKEISF-----PKNIDFIFIGTKSDLYST 334
           K+++        +    + +  K DL   
Sbjct: 274 KQDLKIINMATERKRAVLLLVNKWDLIEK 302



 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + ++  AIV   PG TRD    +   +G   ++ DT G    D
Sbjct: 5   IALVGRPNVGKSTLFNRILRERAAIVDSTPGVTRDRHISEGFWQGRAFRLMDTGGYAPED 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPK-------NIDFIFIGTKSDL 331
            ++    +++T   + +AD+++ + +  +     ++   K       +    F   K + 
Sbjct: 65  GVISNAMLEQTMTAINDADIVVFVADARAGLSYDDLELAKVLRQRFSHKPVFFAVNKVES 124

Query: 332 YSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                E              IS+  G G+ +L++ I   +          
Sbjct: 125 PQLAYEAASFVSTGYTEPWCISAKDGSGVADLLDAILLEMPESDADQEED 174


>gi|218282475|ref|ZP_03488734.1| hypothetical protein EUBIFOR_01316 [Eubacterium biforme DSM 3989]
 gi|218216571|gb|EEC90109.1| hypothetical protein EUBIFOR_01316 [Eubacterium biforme DSM 3989]
          Length = 435

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 29/183 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
             ++G  N GKSSL N++ K+D  IV+++ GTTRD +     ++     I DTAGIR+  
Sbjct: 177 FCVIGRPNVGKSSLVNSILKEDRVIVSNVEGTTRDAIDTPFHVDDKEYMIIDTAGIRKKG 236

Query: 282 DIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            I    EK  I R    ++ ++++L L +              ++       I +  K D
Sbjct: 237 KIYENIEKYSILRALSAIDRSNVVLFLIDGEKGIRDQDKHVAGLAHDAGKGVIIVYNKWD 296

Query: 331 LYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 +                        S+ TG  + +LI  I  +      ++P +
Sbjct: 297 TVEKDEKTMAKIEKEIRAQFLYLNYAPIAFTSALTGSKVNQLIPLIDQVHDACTLRIPTN 356

Query: 373 IPS 375
           I +
Sbjct: 357 ILN 359



 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 17/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN L  +  +IV D PG TRD +  +++      ++ DT GI+  D
Sbjct: 6   VAIVGRPNVGKSTIFNRLIGQRKSIVDDTPGVTRDRIYGEVEWLTQTFRLIDTGGIQIED 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTKSDLYS 333
               +E   +  + +E AD+I+ L          +    +         I    K D   
Sbjct: 66  QAFAQEINMQVDIAIEEADVIIFLTSAKEGVMTDDTVIARKLQKCKKPVILACNKVDNPE 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                Y+            S   G GL +L++ +   L  K       I
Sbjct: 126 MQMNVYEFYALGLGDPVVLSGAHGIGLGDLLDIVLEKLPEKNLSPYEGI 174


>gi|307543972|ref|YP_003896451.1| GTP-binding protein EngA [Halomonas elongata DSM 2581]
 gi|307215996|emb|CBV41266.1| GTP-binding protein EngA [Halomonas elongata DSM 2581]
          Length = 467

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 27/186 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +G  I ++G  N GKS+L N L  +D  +V D  GTTRD + I  +  G    + DTAG+
Sbjct: 176 SGIHIGVIGRPNVGKSTLVNRLLGEDRVVVFDEAGTTRDAIEIPFERRGKPYVLVDTAGV 235

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIG 326
           R   ++    EK  I +T   ++   + +++ +  S   ++++             +   
Sbjct: 236 RRRKNVREVAEKFSIIKTLEAIKECHVAVMVLDARSGLVEQDLHLLDYVLTSGRALVLAV 295

Query: 327 TKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            K D      +E                  H IS+  G  + +L   I+    +      
Sbjct: 296 NKWDGLEHEAKEKMRAEIKRRLGFADYAELHFISALHGTAVGDLYPSIERAFESANSHWS 355

Query: 371 FSIPSH 376
            +  ++
Sbjct: 356 TNRLTN 361



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD    +  L G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGNGMLGGKAYTVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYS 333
           + ++    +++   ++ AD++L + +  S   ++                 +  K+D   
Sbjct: 65  EGIDAAMAEQSLQAIDEADIVLFMVDGRSGLNVADEAIANHLRVNQKKTWLVVNKTDGLE 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
            ++   D            ++  G  +  LI ++      +   +P  
Sbjct: 125 EHSAMADFWQLGIGEPRSIAAAHGRNVTSLIEEVLDPFPERDPDIPAD 172


>gi|313884154|ref|ZP_07817920.1| ribosome biogenesis GTPase Der [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620601|gb|EFR32024.1| ribosome biogenesis GTPase Der [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 438

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS++FN L    V+IV D PG TRD +       G   ++ DT GI   D
Sbjct: 7   VALVGRPNVGKSTIFNRLVGDRVSIVEDFPGVTRDRVYATGKWLGNDYRLIDTGGIELDD 66

Query: 282 DIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYS 333
             + K+   +  + ++ AD+I++L        +E      +    +   I    K+D   
Sbjct: 67  QPLMKQIRYQAEIAIDEADVIVMLANGQEGLTREDEVIASMLLKTDKPIILAVNKTDNPE 126

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKK 368
              + +D         H +S   G GL +L+++I +        
Sbjct: 127 QRMDIFDFYALGLGEPHPVSGAHGTGLGDLLDQIVASFPKDLAT 170



 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 30/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I +   +           K   +G  N GKSSL NA+ K++  IV++I GTTR+ 
Sbjct: 155 DLLDQIVASFPKDLATHYEDTSIKFSFIGRPNVGKSSLVNAVLKEERVIVSNIEGTTREA 214

Query: 258 LTIDLDLE-GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK-- 311
           +      E G  + + DTAGIR+   +    EK  + R+   ++ +D++ ++ +  +   
Sbjct: 215 VDSKFISETGKEMTVIDTAGIRKKGKVYENTEKYSVMRSLAAIDRSDVVCIVLDAETGIR 274

Query: 312 ------KEISFPKNIDFIFIGTKSDLYSTYTEEY------------------DHLISSFT 347
                    ++      I +  K D      + +                     +S+ T
Sbjct: 275 DQDKHVAGYAYEAGKGIIIVVNKWDALKKDNDSFKDFTDKVRSEFRYLNFAPILFVSAKT 334

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPS 375
           G+ L++L   I+ I  N+ +++  S+ +
Sbjct: 335 GQRLDQLSPLIEQIYENRNRRVQSSLLN 362


>gi|224373288|ref|YP_002607660.1| GTP-binding protein Era [Nautilia profundicola AmH]
 gi|223589409|gb|ACM93145.1| GTP-binding protein Era [Nautilia profundicola AmH]
          Length = 293

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 21/218 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  NAGKS+L N L  + +A+V+     +R  +   +      + + DT G+ E +
Sbjct: 7   VGILGKPNAGKSTLLNWLLGEKIALVSPKANASRKRVNAIVMHGDDQIILLDTPGLHEKE 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFP-KNIDFIFIGTKSDLYS-- 333
            ++ K  +K     + ++DL+L L ++          +    KNI  I + TK+DL S  
Sbjct: 67  KLLNKFMLKEALKALSDSDLVLFLADVRDDLSGYEWFLELNTKNIPHIVVLTKTDLVSEE 126

Query: 334 ---TYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                 EEY           IS+  G+G +EL+N I   L          I S +     
Sbjct: 127 EVRKKIEEYKKLGKALDVIPISAVEGKGKDELLNAIVKYLPEHPYYYDPEIISTEHIRDI 186

Query: 383 LSQTVRYLEMASL-NEKDCGLDIIAENLRLASVSLGKI 419
             + +R      L +E     DI+ E L     +L KI
Sbjct: 187 YKELIREALFEKLGDELPYETDILIEKLEE-FDNLDKI 223


>gi|32267038|ref|NP_861070.1| GTP-binding protein EngA [Helicobacter hepaticus ATCC 51449]
 gi|41017015|sp|Q7VFY6|DER_HELHP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|32263090|gb|AAP78136.1| GTP-binding protein YphC [Helicobacter hepaticus ATCC 51449]
          Length = 487

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 92/219 (42%), Gaps = 35/219 (15%)

Query: 201 NDISSHISQG-----KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            +I   + +                 + I+G  N GKSSL NAL  K+ ++V+++ GTT 
Sbjct: 179 EEIDESLEEFLGILESTPNKSEENIAVGIIGRVNVGKSSLLNALLGKERSVVSEVAGTTI 238

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIV--EKEGIKRTFLEVENADLILLLKEI----- 308
           D +  ++D+EG  V+  DTAGIR    I   EK  + RT   +  + +++L+ +      
Sbjct: 239 DPVDDEMDIEGKRVRFVDTAGIRRASKIWGIEKFALLRTNAALAQSHIVILVLDASESFV 298

Query: 309 --NSKKEISFPKNI-DFIFIGTKSDL----YSTYTEEYDHLI-----------SSFTGEG 350
             + K     PK+    I +  K D     Y    +E+ H             S+  G  
Sbjct: 299 ELDEKISSLIPKHALGVIVVLNKWDKKHKEYKEIIKEFKHRFPFLSFAPVMTLSALNGRN 358

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           +++L  +I  +      ++P S  +       ++Q V +
Sbjct: 359 IDKLKKEILKVYQRFAYRIPTSALN-----DVIAQAVAH 392



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 21/187 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L K+ +AI +D+ GTTRDV     D+ G  V++ DT GI + +
Sbjct: 4   IAILGKPNVGKSSLFNRLIKQHLAITSDVSGTTRDVKRACFDISGVEVELLDTGGIDKAE 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSDLYS 333
            +  K     +    + ADL+L + + N      +I++           + +  K D   
Sbjct: 64  GLFAKVSAN-SLKAGQEADLVLYMVDGNVVPQDDDIAYFRTIQKAKKPLVLVINKVDNDK 122

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
              + +D            S     GL  L+  I  +L         S+ ++ R      
Sbjct: 123 IKQQAWDFACFGAEQMYFISVHHNRGLSILLEAIFELL---SLAKEQSLSNNLRSQMDNE 179

Query: 385 QTVRYLE 391
           +    LE
Sbjct: 180 EIDESLE 186


>gi|209964703|ref|YP_002297618.1| GTP-binding protein EngA [Rhodospirillum centenum SW]
 gi|209958169|gb|ACI98805.1| GTP-binding protein, putative [Rhodospirillum centenum SW]
          Length = 478

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 18/160 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +    + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L G  + + DTAG
Sbjct: 5   KRRLTVAIVGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDWRAGEARLAGIELTVVDTAG 64

Query: 277 IRET-DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           + E  DD +E    ++T   +E AD+ L L +  +                    I +  
Sbjct: 65  LEEVFDDSLEARMRRQTERAIERADVALFLIDARAGVTPLDHHFAGWLRKGRTPVILVAN 124

Query: 328 KSD-------LYSTYTEEY--DHLISSFTGEGLEELINKI 358
           K++       L   +         +S+  GEGL +L+  +
Sbjct: 125 KAEGAAGRPGLLEAFELGLGEPVPLSAEHGEGLADLVEAL 164



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 91/226 (40%), Gaps = 25/226 (11%)

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN--DISSHISQGKLGEIIRNGYKIVIL 225
           +   +EA L +  + + +    +        L +  +  +  +  +         ++ I+
Sbjct: 157 LADLVEALLPYEPKPEDEQPDEEIWEAWDEALPDPAEAGADGAAEEPAPEEPKALQLAIV 216

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DD 282
           G  N GKS+L NAL  ++  +     G TRD + ++ +  G  V++ DTAG+R     D 
Sbjct: 217 GRPNVGKSTLLNALVGEERVLTGPEAGMTRDAIAVEWNWRGQPVRLVDTAGLRRRARVDG 276

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTKSDLYST 334
            +EK  +  T   +  A +++L+ + ++   K++++  +         +    K D    
Sbjct: 277 KLEKLAVADTLRVIRMAHVVVLVLDAHAILDKQDLTIARMVVEEGRALVIAINKWDSVEN 336

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                        G  L++L +++++ L         +I + +   
Sbjct: 337 ------------KGAALKQLRDRLETSLPQVRGIPTVTISALRGQR 370


>gi|182414655|ref|YP_001819721.1| small GTP-binding protein [Opitutus terrae PB90-1]
 gi|177841869|gb|ACB76121.1| small GTP-binding protein [Opitutus terrae PB90-1]
          Length = 501

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 96/247 (38%), Gaps = 44/247 (17%)

Query: 135 ISSETEMQRRLS-------------MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +++ +E Q   +             ++G+SG  + +  +       +R  +    DF +E
Sbjct: 69  LTAASEEQVEFAIATAALILFVVDGLDGISGLDAKIAERLRKSGKPVR-LVVNKADFDDE 127

Query: 182 EDVQNFSSKEVLNDIL-----------FLKNDISSHISQGKLGEIIRNGYK---IVILGH 227
           +       +  L + L            L+  I   +      E  R+  K   +  +G 
Sbjct: 128 KIDLAEVYRLGLGEPLRVSAEHGRGESELRAAIIEALGTAPEIEEARDPQKPLGVCFIGR 187

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-----YLVKISDTAGIRETDD 282
            N GKSSL N L + D  IV+++PGTTRD + +  +  G     Y  ++ DTAGI+    
Sbjct: 188 PNVGKSSLSNRLLQSDRLIVSEVPGTTRDAIELPFEFIGRDGKSYPFRLIDTAGIKAATK 247

Query: 283 ---IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDL 331
               VE     R+   ++  D++ L+ +          +    +  ++   + +  K DL
Sbjct: 248 LASPVEYFSRLRSLDAIKETDVVFLVLDALEGVTQQDKAIAGEAVKEHKPIVLVVNKWDL 307

Query: 332 YSTYTEE 338
                +E
Sbjct: 308 VKRAFKE 314



 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 19/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS LFN LA+K ++IV D PG TRDV++ D+   GY +  +   G R  +
Sbjct: 5   VAIVGRPNVGKSRLFNRLARKRISIVHDQPGVTRDVVSTDIADGGYTLLDTGGIGYRGSD 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE-------INSK-KEISFPKNIDFIFIGTKSDL 331
           T   +     ++    +  A LIL + +       +++K  E           +  K+D 
Sbjct: 65  TPAALTAASEEQVEFAIATAALILFVVDGLDGISGLDAKIAERLRKSGKPVRLVVNKADF 124

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
                +  +            S+  G G  EL   I   L
Sbjct: 125 DDEKIDLAEVYRLGLGEPLRVSAEHGRGESELRAAIIEAL 164


>gi|120610115|ref|YP_969793.1| GTP-binding protein EngA [Acidovorax citrulli AAC00-1]
 gi|166224298|sp|A1TM31|DER_ACIAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|120588579|gb|ABM32019.1| small GTP-binding protein [Acidovorax citrulli AAC00-1]
          Length = 447

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 32/197 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG+R 
Sbjct: 180 IRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQQFELIDTAGLRR 239

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTK 328
                + +EK  + +T   +E+A+++LLL +      +    I+          +    K
Sbjct: 240 KGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVLAVNK 299

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D    Y  +                  H IS+   +GL  L   I         K+P  
Sbjct: 300 WDAVDDYGRQMLERSIETRLSFLKFASLHFISAKKRQGLGPLWTSIAQAHKAATCKMPTP 359

Query: 373 IPSHKRHLYHLSQTVRY 389
           + +       L + V++
Sbjct: 360 VLTR-----LLLEAVQF 371



 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD    +  L  +   + DT G   + 
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGKLGKHEYIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLY 332
              + +E  K+T   V  AD+++ + +  +                    + +G K++  
Sbjct: 65  SSGIYREMAKQTQQAVAEADVVIFVVDARAGLSAQDHDIANYLRRLGKPCLLVGNKAEGM 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
               +  +            S+  G+G+  ++      L 
Sbjct: 125 REGVQLAEFYELGLGEVLPVSAAHGQGVRSMLESALDTLQ 164


>gi|329904161|ref|ZP_08273691.1| GTP-binding protein EngA [Oxalobacteraceae bacterium IMCC9480]
 gi|327548117|gb|EGF32835.1| GTP-binding protein EngA [Oxalobacteraceae bacterium IMCC9480]
          Length = 340

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 32/199 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I I+G  N GKS++ N L  ++  I  D+PGTTRD + I  +  G    + DTAGIR 
Sbjct: 135 IRIAIVGRPNVGKSTMVNTLLGEERVIAFDMPGTTRDSIEIPFERSGQQYTLIDTAGIRR 194

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
                + +EK  + +T   +  A+++LLL +                       +    K
Sbjct: 195 RGKVFEAIEKFSVVKTLQSISEANVVLLLLDAQQDISEQDAHIAGFILESGRALVVGVNK 254

Query: 329 SD-LYSTYTEEYD---------------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D L S+  +E                 H IS+    G+++L+  I S  +     L   
Sbjct: 255 WDGLTSSRRDEIKIDLDRKLDFLSFAKFHYISALKATGVDQLMKSINSAYAAAMSDLSTP 314

Query: 373 IPSHKRHLYHLSQTVRYLE 391
             +       L + V + +
Sbjct: 315 KLTR-----ALIEAVEHQQ 328


>gi|308184621|ref|YP_003928754.1| GTP-binding protein EngA [Helicobacter pylori SJM180]
 gi|308060541|gb|ADO02437.1| GTP-binding protein EngA [Helicobacter pylori SJM180]
          Length = 462

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 39/222 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERAYAFSSF-----------------GMPKSFNISVSHNRGISALIDAVLNALNLN 170

Query: 394 SLNEKDCGLDIIAENLRLASVSLGK----------ITGCVDV 425
            + E+D   DI+ E+L   + +L +          I G V+V
Sbjct: 171 QIIEQDLDADIL-ESLETPNNALEETKEEEIIQVGIIGRVNV 211



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 102/233 (43%), Gaps = 32/233 (13%)

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           I + I+A L+      +        + + L   N   + + + K  EII+ G    I+G 
Sbjct: 156 ISALIDAVLNALNLNQIIEQDLDADILESLETPN---NALEETKEEEIIQVG----IIGR 208

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VE 285
            N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR    I  +E
Sbjct: 209 VNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHRGKILGIE 268

Query: 286 KEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKSDLYSTYTE 337
           K  ++RT   +E + + LL+ ++++      ++IS   +      I I  K D+     E
Sbjct: 269 KYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYE 328

Query: 338 EY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           E                    S      ++E+ +KI  +     K++P S+ +
Sbjct: 329 EIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSLLN 381


>gi|320534114|ref|ZP_08034655.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133693|gb|EFW26100.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 734

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 91/209 (43%), Gaps = 31/209 (14%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           EVL+ ++ +  ++S+  +    G++ R    I ++G  N GKSSL N++A ++  +V + 
Sbjct: 448 EVLDAVMEILPEVSAVAAAAPEGDLHR----IALVGRPNVGKSSLLNSIAGRERVVVNET 503

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKE 307
            GTTRD +   ++L+G      DTAGIR   +     +   + RT   ++NA++ ++L +
Sbjct: 504 AGTTRDPVDEIIELDGRQWVFVDTAGIRRRVKQSRGADYYAVLRTQGAIDNAEVAVVLLD 563

Query: 308 INSK--------KEISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLISSF------ 346
            +           + +       + +  K DL     +       E+D    S+      
Sbjct: 564 ASEPISEQDVRVVQQAVDAGRALVLVNNKWDLVDEERQKMLLWEVEHDLAHVSWAPHINL 623

Query: 347 ---TGEGLEELINKIKSILSNKFKKLPFS 372
              TG     L+  + + L     ++P  
Sbjct: 624 AARTGWHTNRLVRALDAALEGWTTRVPTG 652



 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 79/203 (38%), Gaps = 20/203 (9%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQG--KLGEIIRNGYKI-VILGHSNAGKSSLFNA 238
           ED++  + +  L D    + D++   + G    G+ +  G  +  ++G  N GKS+L N 
Sbjct: 257 EDLRAQAMRAGLADYELDEEDLALLEADGGLPTGDSVEPGLPVLAVVGRPNVGKSTLVNR 316

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           +  +  A+V D PG TRD ++   +  G    I DT G       ++     +  + VE 
Sbjct: 317 VLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVDVAGLDAAVATQAEIAVEM 376

Query: 299 ADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLI------- 343
           AD +LL+ +       +  +            +    K D  +   +             
Sbjct: 377 ADAVLLVVDAQVGITETDARVVRMLRRSGKPVVLAANKVDSPAQEGDAAALWNLGLGEPF 436

Query: 344 --SSFTGEGLEELINKIKSILSN 364
             S+  G G  E+++ +  IL  
Sbjct: 437 PVSALHGRGSGEVLDAVMEILPE 459


>gi|222055248|ref|YP_002537610.1| GTP-binding protein Era [Geobacter sp. FRC-32]
 gi|259645945|sp|B9M913|ERA_GEOSF RecName: Full=GTPase Era
 gi|221564537|gb|ACM20509.1| GTP-binding protein Era [Geobacter sp. FRC-32]
          Length = 297

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 96/265 (36%), Gaps = 55/265 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +    + I +D P TTR+ +    +L G  +   DT GI    
Sbjct: 11  VSIIGRPNVGKSTLLNKILGDKIVITSDKPQTTRNRIQGIHNLPGCQIVFIDTPGIHRAK 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
             + K  +      ++  D+IL L E ++K                   + +  K DL +
Sbjct: 71  SRLNKYMVDVALSSIKEVDVILFLVEADTKPANQEETILGALASAEAPVVLVINKVDLVA 130

Query: 334 T-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                         Y       +S+ TG+    L+  ++ +L       P  I +     
Sbjct: 131 KESLLEKMAAYSGLYPFREVIPVSALTGDNTGRLVQVVRDLLPEGPPYFPDDILTDVPER 190

Query: 381 YHLSQTVR---------------YLEMASLNEKDCGLDIIAENL---RLASVSLGKITGC 422
           + +++ VR                + + S  E+D GL +I+  +   R +   +  I G 
Sbjct: 191 FVVAEIVREKVFRLTHDEVPYSVAVVVESFKERDDGLILISAVINVERDSQKGI--IIGR 248

Query: 423 VDV-------------EQLLD-IIF 433
                           E+LLD  IF
Sbjct: 249 KGEMLKKIGMQARREIEELLDTRIF 273


>gi|239907769|ref|YP_002954510.1| GTP-binding protein EngA [Desulfovibrio magneticus RS-1]
 gi|259645872|sp|C4XIQ6|DER_DESMR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|239797635|dbj|BAH76624.1| GTP-binding protein EngA [Desulfovibrio magneticus RS-1]
          Length = 444

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L +   AI  D+PG TRD L    ++EG  V + DT G+  E 
Sbjct: 5   VAIVGRPNVGKSTLFNRLTRGRRAITHDLPGVTRDRLEAPAEIEGRFVTLVDTGGMDYEA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD-L 331
           ++ + ++ +++    +  AD++L L +         +   E         I    K D L
Sbjct: 65  EESLARQIVEQAEAALVTADVVLFLVDGKAGRTALEDDLAERLRRLGKPVIVAVNKVDGL 124

Query: 332 YSTYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   D          IS+  G+G+ EL   I   L       P +
Sbjct: 125 ERVAAMTADFHAWGLPLLAISAAHGQGMAELAEAIAERLPEAEPYDPDA 173



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 106/279 (37%), Gaps = 37/279 (13%)

Query: 93  NGILEELAKMPNLRLANPGEFSRRAF---ENGKIDLLEAESLADLISSETEMQRRLS--- 146
             I  +L  +   RL  P E   R     + G +D    ESLA  I  + E     +   
Sbjct: 27  RAITHDLPGVTRDRLEAPAEIEGRFVTLVDTGGMDYEAEESLARQIVEQAEAALVTADVV 86

Query: 147 ---------MEGMSGELSSLYGQWIDKLT-------HIRSFIEADLDFSEEEDVQNFSSK 190
                       +  +L+    +    +         +        DF          S 
Sbjct: 87  LFLVDGKAGRTALEDDLAERLRRLGKPVIVAVNKVDGLERVAAMTADFHAWGLPLLAISA 146

Query: 191 EVLNDILFLKNDISSHISQGK----LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                +  L   I+  + + +       +++   ++ +LG  NAGKSSL NAL  +   I
Sbjct: 147 AHGQGMAELAEAIAERLPEAEPYDPDAPLVQTVLRLAVLGRPNAGKSSLINALVGESRLI 206

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLIL 303
           V+DI GTTRD + + +  +G      DTAG+R+     D +E+  + +     + AD+ +
Sbjct: 207 VSDIAGTTRDAVDVVVHQKGKRYLFVDTAGVRKRTRITDGLERYSVAKALSSAKRADVAV 266

Query: 304 LLKE------INSKKEISFPKNIDFIFI--GTKSDLYST 334
           ++ +      +  K+ ISF  +    F+    K+DL   
Sbjct: 267 VVIDATGGVGVQDKRLISFLDSERKAFLVAVNKTDLVPQ 305


>gi|116670099|ref|YP_831032.1| GTP-binding protein EngA [Arthrobacter sp. FB24]
 gi|116610208|gb|ABK02932.1| small GTP-binding protein [Arthrobacter sp. FB24]
          Length = 516

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 93/238 (39%), Gaps = 25/238 (10%)

Query: 149 GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHIS 208
             SG+  +   ++   +T   +   A LD  E E ++  S +  L+D     ++  + + 
Sbjct: 6   QTSGKFGAGEDEYTPTVTDQVAEHLAALDDDEAE-LRAASLRAGLDDYE--LDEEDAALL 62

Query: 209 QGKLGEIIRNGYK-----IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
            G+  +   +G       + I+G  N GKS+L N +  +  A+V D PG TRD +     
Sbjct: 63  SGRYDDQDFDGPVKLDPVLAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSAT 122

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----IS 315
             G    + DT G       +     ++  + VE AD +L + +      +  E    + 
Sbjct: 123 WNGRNFTVVDTGGWEHDARGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEAVVKML 182

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEY---------DHLISSFTGEGLEELINKIKSILSN 364
                  I +  K D ++   +            + +S+  G G+ +L++ +   L  
Sbjct: 183 RKSKKPVIMVANKVDDFAQEADSATLWGLGFGEPYPVSALHGRGVADLLDHVMDTLPE 240



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 109/288 (37%), Gaps = 31/288 (10%)

Query: 116 RAFENGKIDLLEAESLADLIS-SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           R  E  ++ +  A+++  ++  +        ++  M  +         +K+       ++
Sbjct: 146 RVAEQAEMAVELADAVLFVVDSAVGATATDEAVVKMLRKSKKPVIMVANKVDDFAQEADS 205

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII-RNG--YKIVILGHSNAG 231
              +          S      +  L + +   + +    E + R+G   +I ++G  N G
Sbjct: 206 ATLWGLGFGEPYPVSALHGRGVADLLDHVMDTLPEYSTIEGLERSGGPRRIALIGRPNVG 265

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEG 288
           KSSL N LA  +  +V +  GTTRD +   ++L G   +  DTAGIR    + +      
Sbjct: 266 KSSLLNKLAGSERVVVDNTAGTTRDPVDEFIELGGRTWRFVDTAGIRRRQHMAQGADFYA 325

Query: 289 IKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS------- 333
             RT   +E A++ ++L  ++           +++       +    K DL         
Sbjct: 326 SLRTQSALEKAEVAVVLLAVDEVLSEQDVRILQLAIESGRALVLAFNKWDLLDDERRTYL 385

Query: 334 --TYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                ++  H        IS+ TG   + L+  + + L +  K++P  
Sbjct: 386 EREIEQDLAHVAWAPRVNISALTGWHKDRLVPALDTALESWDKRIPTG 433


>gi|188524409|ref|ZP_03004430.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198273778|ref|ZP_03206312.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|195660088|gb|EDX53468.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198249533|gb|EDY74315.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
          Length = 442

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 14/144 (9%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +  +K  I+G  N GKSSL N +  +   IV    G+TRD +  D         I DTAG
Sbjct: 172 QERFKFCIIGRPNVGKSSLTNTILGEQRMIVNPEAGSTRDSIDNDFSYHNKKYTIIDTAG 231

Query: 277 IRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
           +R      + VEK  + RT   +E + LILL+ + +            +++  NI  I +
Sbjct: 232 VRRKGKIVEAVEKYAVLRTQKAIERSQLILLVLDGSEPFKEQDEVVGGLAYDANIPTIIV 291

Query: 326 GTKSDLYSTYTEEYDHLISSFTGE 349
             K D       +  H +     +
Sbjct: 292 VNKWD---NIANKNSHTMEMVKKQ 312



 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 19/158 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSLFN +  +  +IV D PG TRD +    +       + DT GI  ++
Sbjct: 4   IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDVGNWLTRDFMLIDTGGIISSE 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS-----FPKNIDFIFIGTKSDL 331
           D  +    ++    +  A+ I+ L        N  K+I+       K+   I +  K + 
Sbjct: 64  DTYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAKDKKVILVVNKVES 123

Query: 332 YSTYTEEYD---------HLISSFTGEGLEELINKIKS 360
              Y  E +           IS+  G G+ +L++++  
Sbjct: 124 EKYYFNEGELYSFGFGKFFKISAEHGIGMGDLLDELVK 161


>gi|325981901|ref|YP_004294303.1| ribosome-associated GTPase EngA [Nitrosomonas sp. AL212]
 gi|325531420|gb|ADZ26141.1| ribosome-associated GTPase EngA [Nitrosomonas sp. AL212]
          Length = 464

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 104/298 (34%), Gaps = 49/298 (16%)

Query: 121 GKIDLLEAESLADLISSETEMQRRLS---------MEGMSGELSSLYGQWIDKLTHIRSF 171
           G  + +  E +   ++ +T      +          +G++     +  Q       I   
Sbjct: 58  GGFEPVIKEGVLYAMAKQTIQAIDEADKVLFIVDGRQGLTAHDKIIAEQLRKSGQKILLV 117

Query: 172 IE---------ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL--GEIIRNGY 220
           +             +F E       +   +  D +    D++  ++       E      
Sbjct: 118 VNKTEGMTTTVVTAEFFELGLGDPCAVSAMHGDNIHELADLA--LADFPEVVEESASKHP 175

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           KI I+G  N GKS+L N L  ++  I  D PGTTRD + +D   +     + DTAG+R  
Sbjct: 176 KIAIVGRPNVGKSTLINTLLGEERVIAFDQPGTTRDSIYVDFTHKDKQYTLIDTAGLRRR 235

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
            +  + +EK    +T   +E+A++++L+ +  ++                   +    K 
Sbjct: 236 GQVHETIEKFSAIKTLQAIEDANVVVLILDARNEISDQDAHIAGFILETGRALVIAINKW 295

Query: 330 DLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           D    Y                     H IS+  G G+++L+  I    +     LP 
Sbjct: 296 DGLDEYQRATIKSDLSRKLAFLSFAQLHYISALHGTGMKKLLPSIDIAYAAAMADLPT 353



 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 18/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           +V++G  N GKS+LFN L +   AIV DIPG TRD       +      + DT G     
Sbjct: 5   LVLVGRPNVGKSTLFNRLTRTRDAIVADIPGLTRDRHYGAGRVGDKPYLVVDTGGFEPVI 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            + V     K+T   ++ AD +L + +             E         + +  K++  
Sbjct: 65  KEGVLYAMAKQTIQAIDEADKVLFIVDGRQGLTAHDKIIAEQLRKSGQKILLVVNKTEGM 124

Query: 333 ST--YTEEY-------DHLISSFTGEGLEELIN 356
           +T   T E+          +S+  G+ + EL +
Sbjct: 125 TTTVVTAEFFELGLGDPCAVSAMHGDNIHELAD 157


>gi|254519865|ref|ZP_05131921.1| GTP-binding protein Era [Clostridium sp. 7_2_43FAA]
 gi|226913614|gb|EEH98815.1| GTP-binding protein Era [Clostridium sp. 7_2_43FAA]
          Length = 296

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 88/211 (41%), Gaps = 28/211 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + ++IV++ P TTR+ +   L  + + +   DT GI +  
Sbjct: 7   VTIVGRPNVGKSTLLNHIMGEKLSIVSNKPQTTRNNIQTILTGKDHQLVFVDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF----------PKNIDFIFIGTKSDL 331
             + +  +      ++  DL+L L  IN ++EI             +      +  K D 
Sbjct: 67  HKLGEYMVNSAKDSIKEVDLVLFL--INPEEEIGRGDKFIIETLKNQKAPVFLVVNKIDE 124

Query: 332 Y-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +             S    +    IS+  G+ +++L+  +   +    K  P  + +  +
Sbjct: 125 FTQERVAKTLQMYSSELEFKEIIPISALRGKNVDKLVELMIETMPEGPKYYPDDMITDVQ 184

Query: 379 HLYHLSQTVRYLEMASLNE---KDCGLDIIA 406
             + +S+ VR   + +L E       +DII 
Sbjct: 185 ERFVVSEIVREKALRTLREEIPHGIAVDIIQ 215


>gi|284031167|ref|YP_003381098.1| small GTP-binding protein [Kribbella flavida DSM 17836]
 gi|283810460|gb|ADB32299.1| small GTP-binding protein [Kribbella flavida DSM 17836]
          Length = 460

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/313 (19%), Positives = 120/313 (38%), Gaps = 52/313 (16%)

Query: 111 GEFSRRAF---ENGKIDLLEAESLADLISSETEMQRRLSME---------GMSGELSSLY 158
            +++ RAF   + G  D  +A  +A L++++ E+    +           G++    ++ 
Sbjct: 67  ADWAGRAFTVVDTGGWDP-DAVGMAALVAAQAEVAIHAADAVLFVVDATVGITDADEAVV 125

Query: 159 GQWID----------KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHIS 208
                          K+   R   EA   +S         S         + + + + + 
Sbjct: 126 RVLRKSGKPVVLAANKVDDQRVEAEAMNLWSLGIGEPFPISAMHGRGTGDMLDAVLAALP 185

Query: 209 QGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +         G   ++ I+G  N GKSSL N +AK+D  +V+D+ GTT D +   + L G
Sbjct: 186 EAPPERDAEIGGPRRVAIVGKPNVGKSSLLNKVAKEDRVVVSDVSGTTVDPVDELITLAG 245

Query: 267 YLVKISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-- 318
              +  DTAGIR         E     RT   +E A++++++ + +   +++++      
Sbjct: 246 RQWRFIDTAGIRRKVKNVQGHEYYASLRTNSAIERAEVVVVVIDASEPMTEQDLRIMNTV 305

Query: 319 ---NIDFIFIGTKSDLYST-----YTEEYD-----------HLISSFTGEGLEELINKIK 359
                  +    K DL           E D             IS+ TG  +E+L+  I+
Sbjct: 306 EEAGKALVIAYNKWDLVDEDRRYYLEREIDRDLVQFRWAPRVNISALTGRHMEKLVPAIE 365

Query: 360 SILSNKFKKLPFS 372
           + L     ++P  
Sbjct: 366 AALDGWQTRVPTG 378



 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 66/175 (37%), Gaps = 19/175 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD ++ D D  G    + DT G     
Sbjct: 27  LAIVGRPNVGKSTLVNRIIGRREAVVEDTPGVTRDRVSYDADWAGRAFTVVDTGGWDPDA 86

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
             +      +  + +  AD +L + +          +   +        +    K D   
Sbjct: 87  VGMAALVAAQAEVAIHAADAVLFVVDATVGITDADEAVVRVLRKSGKPVVLAANKVDDQR 146

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                  L+S    E    IS+  G G  ++++ + + L     +    I   +R
Sbjct: 147 VEAEAMNLWSLGIGE-PFPISAMHGRGTGDMLDAVLAALPEAPPERDAEIGGPRR 200


>gi|317011055|gb|ADU84802.1| GTP-binding protein EngA [Helicobacter pylori SouthAfrica7]
          Length = 460

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 25/181 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  N GKSSL NAL KK+ +IV+ + GTT D +   + +    +   DTAGIR 
Sbjct: 199 IQVGIIGRVNVGKSSLLNALTKKERSIVSSVAGTTIDPIDETILIGDQKICFVDTAGIRH 258

Query: 280 TDDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKS 329
              I  +EK  ++RT   +E + + LL+ ++++      ++IS   +      I I  K 
Sbjct: 259 RGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKW 318

Query: 330 DLYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D+     EE                    S      +EE+ +KI  +     K++P S+ 
Sbjct: 319 DIRYAPYEEIMAVLKRKFRFLEYAPVITTSCLKTRHIEEIKHKIIEVYECFSKRIPTSLL 378

Query: 375 S 375
           +
Sbjct: 379 N 379



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 9   IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
             + KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 68  AFLSKEIKAFNLKAAQMSDLILYVVDGKLIPSDEDIKLFREVFKINPNCFLVINKIDNDK 127

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 128 EKERTYAFSSFGMPKSFNISVSHNRGISVLIDAILHAL 165


>gi|148380897|ref|YP_001255438.1| GTP-binding protein Era [Clostridium botulinum A str. ATCC 3502]
 gi|153932263|ref|YP_001385205.1| GTP-binding protein Era [Clostridium botulinum A str. ATCC 19397]
 gi|153936986|ref|YP_001388674.1| GTP-binding protein Era [Clostridium botulinum A str. Hall]
 gi|226741172|sp|A7FXK1|ERA_CLOB1 RecName: Full=GTPase Era
 gi|226741199|sp|A5I626|ERA_CLOBH RecName: Full=GTPase Era
 gi|148290381|emb|CAL84508.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|152928307|gb|ABS33807.1| GTP-binding protein Era [Clostridium botulinum A str. ATCC 19397]
 gi|152932900|gb|ABS38399.1| GTP-binding protein Era [Clostridium botulinum A str. Hall]
          Length = 296

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 24/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NA+ K+ ++IV+  P TTR+ +   L  + Y +   DT GI +  
Sbjct: 7   VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             + +  +K     +++ DL+L L   + K         E      +    +  K D   
Sbjct: 67  HKLGEYMVKSASEAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKIDENP 126

Query: 331 ------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    TY+E    E    IS+  G+ ++ L   +   +    +  P  +   +   
Sbjct: 127 QEKVAETLKTYSELMEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIIDQNER 186

Query: 381 YHLSQTVRYLEMASLNE---KDCGLDIIA 406
           + +++ VR   +  L+E       ++I+ 
Sbjct: 187 FIVAEIVREKALRLLSEEVPHGIAVEILQ 215


>gi|255534810|ref|YP_003095181.1| GTP-binding protein EngA [Flavobacteriaceae bacterium 3519-10]
 gi|255341006|gb|ACU07119.1| GTP-binding protein EngA [Flavobacteriaceae bacterium 3519-10]
          Length = 436

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 23/188 (12%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I +     +  +      KI I G  N GKS+L NAL  K   IVTD+ GTTRD 
Sbjct: 154 ELLDAIVNEFPTTEYKDPFEGLPKITIAGRPNVGKSTLTNALLDKQQNIVTDVAGTTRDS 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +    +  G+   + DTAG+R    +    E   + R+   +E +D+++++ +     E 
Sbjct: 214 IQTLYNKFGHEFVLVDTAGMRRKAKVKEDLEFYSVMRSIRSIEYSDVVIIMVDATLGWES 273

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                  ++       + +  K DL                     +  N+IK  +  +F
Sbjct: 274 QDMNIFGLAQKNRKGIVIVVNKWDLVEE-----------KHTNTTRDFENEIKERI-GQF 321

Query: 367 KKLPFSIP 374
             +P    
Sbjct: 322 TDIPILFI 329



 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 65/168 (38%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN   ++  AIV    G TRD      D  G    + DT G    T
Sbjct: 5   VAIVGRPNVGKSTLFNRFLERREAIVDSTAGVTRDRHYGKSDWNGVEFTVIDTGGYEVNT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY 332
           +D+ ++E  K+  L V+ A  I+ +  +            E+    N        K D  
Sbjct: 65  EDVFQEEITKQVQLAVDEATSIIFMLNVQDGLTDTDQDIYEMLRRSNKPVYVTINKVDSA 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
           +      +            SS TG G  EL++ I +       K PF
Sbjct: 125 TDELAATEFYQLGIEKYFTLSSATGSGTGELLDAIVNEFPTTEYKDPF 172


>gi|195941645|ref|ZP_03087027.1| GTP-binding protein EngA [Borrelia burgdorferi 80a]
 gi|312149483|gb|ADQ29554.1| ribosome-associated GTPase EngA [Borrelia burgdorferi N40]
          Length = 433

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 17/192 (8%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
              +    +L F     V     + +     FLK ++      G++G       K+ I+G
Sbjct: 127 ECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFLKVEV------GEVGIESGADIKVGIIG 180

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDI 283
             N+GKS+L N L+  ++AIV+D PGTTRD +       G + ++ DTAGIR     ++I
Sbjct: 181 KPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFARNGKVFEVVDTAGIRRRARVNEI 240

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK-----KEISF---PKNIDFIFIGTKSDLYSTY 335
           VE   + R    ++  D++ LL ++  K     K+I+     K    + + +K DL    
Sbjct: 241 VEYYSVNRALKVIDMVDIVFLLIDVQEKLTSQDKKIAHYVTKKGKGIVIVFSKWDLVDES 300

Query: 336 TEEYDHLISSFT 347
              ++ L S   
Sbjct: 301 KGYFEALKSHVK 312



 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 16/155 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNI--DFIFIGTKSDLYS 333
            D + K  +++    +E  DLILL+ +IN       + I   +      + +  K D   
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDINEILLEDYQIIERLRTYSSKVVLVLNKVDTKD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIK 359
                ++            S+    G+ +L + +K
Sbjct: 126 KECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFLK 160


>gi|85057761|ref|YP_456677.1| GTP-binding protein EngA [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789866|gb|ABC65598.1| GTP-binding protein [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 479

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 75/206 (36%), Gaps = 14/206 (6%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQN---FSSKEVLNDILFLKNDISSHISQGKLGE 214
            G  +DK+  +        D S  E +       S    ++    +  +     +    +
Sbjct: 151 IGDLLDKIVFLLRDASLTSDSSFLEALPTDKSLQSSLFESNYEIPEKQLLEPEQKQNQEK 210

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
                 K  ++G  N GKS+L N+L      IV+D+ GTT D +    + +G   +I DT
Sbjct: 211 EENKIIKFCVVGRPNVGKSTLTNSLLASQRMIVSDMAGTTTDAVDTFFENDGQKYQIIDT 270

Query: 275 AGIRETDDIVE---KEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFI 323
           AGI++   I E   K    R    +E AD+  L+ +         K I+          I
Sbjct: 271 AGIKKRGKIYEQEDKYSFLRALGALEKADIACLVLDAKEGILEQDKNIAGFILENYKACI 330

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGE 349
            I  K DL    T    +       E
Sbjct: 331 IIVNKWDLLEKDTNTLKNFEQKIRQE 356



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 17/172 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +KI I+G  N GKSSLFN +  K  AI     G TRD +            + DT GI  
Sbjct: 3   FKIAIVGRPNVGKSSLFNRIIGKRHAITHQKKGITRDRIYATAHWLTKTFGVIDTGGIEI 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL 331
                 ++   +  L V+ AD+I+ + +             ++ +      I    K D 
Sbjct: 63  KSTPFLEQIKIQAQLAVDEADVIVFVVDGQIGLTQNDSYLAKLLYKTKKPVILAVNKIDN 122

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           ++     Y+           IS+  G G+ +L++KI  +L +       S  
Sbjct: 123 HNLLFNTYEFYALGFDTPFAISTQHGVGIGDLLDKIVFLLRDASLTSDSSFL 174


>gi|134094495|ref|YP_001099570.1| GTP-binding protein EngA [Herminiimonas arsenicoxydans]
 gi|166198721|sp|A4G4K6|DER_HERAR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|133738398|emb|CAL61443.1| GTP-binding protein EngA [Herminiimonas arsenicoxydans]
          Length = 447

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  N GKS+L N L  ++  I  D+PGTTRD + I  + EG L  + DTAGIR 
Sbjct: 181 IRLAIVGRPNVGKSTLVNTLLGEERVIAFDLPGTTRDSIEIPFEREGKLYTLIDTAGIRR 240

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
                + +EK  + +T   +  A+++LLL +  ++++IS        FI           
Sbjct: 241 RGKVFEAIEKFSVVKTLQSISEANVVLLLLD--AQQDISEQDAHIAGFILESGRALVVGV 298

Query: 337 EEYDHLISSFTGEGLEELINKI 358
            ++D L S    E   +L  K+
Sbjct: 299 NKWDGLTSDRRDEIKIDLERKL 320



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 20/181 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRMGERPFLVIDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
            + +  E  K+T   V  AD+++ + +             +         + +  K    
Sbjct: 65  KEGIMHEMAKQTKQAVAEADVVIFIVDGRQGLTPHDKTITDFLRKSGRSVMLVVNKAEGM 124

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                 +D Y     +  ++IS+  G+G+ +L+ +   I   +         S  R +  
Sbjct: 125 KYTMVTADFYELGLGD-PYVISAAHGDGVSDLVEESLDIAFAQRPPEEEVPESKDRSIRL 183

Query: 383 L 383
            
Sbjct: 184 A 184


>gi|147677944|ref|YP_001212159.1| GTP-binding protein EngA [Pelotomaculum thermopropionicum SI]
 gi|189037152|sp|A5D1U6|DER_PELTS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|146274041|dbj|BAF59790.1| predicted GTPase [Pelotomaculum thermopropionicum SI]
          Length = 440

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 15/168 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   +   K  E      KI ++G  N GKSSL N +  ++  IV+++PGTTRD 
Sbjct: 155 DLLDRLVEMLPPEKEDEYPPEAIKIAVIGRPNVGKSSLVNLILGEERVIVSNVPGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILL-------LKE 307
           +    +  G    I DTAG+R     D   EK G+ R    ++ +D++L+       + +
Sbjct: 215 IDTPFEANGRHYVIIDTAGMRRKSRIDRPTEKYGVIRALRAIDRSDVVLVVLDAVEGVTD 274

Query: 308 INSK-KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
            + +    +       + +  K DL     E+  H ++ +T +  EEL
Sbjct: 275 QDKRIAGYAHEAGKASVIVVNKWDLV----EKDGHTMNRYTEKIREEL 318



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN +    VAIV   PG TRD L  D +  G    + DT G+   +
Sbjct: 6   VAIVGRPNVGKSTLFNRIVGNRVAIVEGEPGVTRDRLYQDAEWSGRSFTLVDTGGLDFKE 65

Query: 282 DIVEKEGIKR-TFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
                +G++R   + +  AD +LL+ +  +           I        + +  K + +
Sbjct: 66  SDEIIQGVRRQAEIAIREADAVLLVVDAKAGLNPGDEEVASIIRRAEKPALLVANKVEKF 125

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKL 369
            +  + YD            S+  G    +L++++  +L  + +  
Sbjct: 126 DSLEQIYDFYRLGLGDPLPVSAAEGLNTGDLLDRLVEMLPPEKEDE 171


>gi|86749568|ref|YP_486064.1| GTP-binding protein EngA [Rhodopseudomonas palustris HaA2]
 gi|123004191|sp|Q2IXA7|DER_RHOP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|86572596|gb|ABD07153.1| GTP-binding protein [Rhodopseudomonas palustris HaA2]
          Length = 459

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 29/190 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +   ++ I+G  NAGKS+  N L  +D  + +   GTTRD + ++++ +G   +I DTAG
Sbjct: 185 KRPIRVAIVGRPNAGKSTFINRLLGEDRLLTSPEAGTTRDSIAVEVNWKGREFRIFDTAG 244

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--------FI 325
           +R    I    EK  +      V  A++++L+ +  ++ E    +  D I          
Sbjct: 245 LRRRSRIEEKLEKLSVADALRAVRFAEVVVLMMDSQNRFEEQDLRIADLIEREGRALVIA 304

Query: 326 GTKSDL-------YSTYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFK 367
             K DL        +    + DH             S   GEG++ LI+ I+   +    
Sbjct: 305 VNKWDLVEQQGGQIAQLRADADHWLPQVRGVPIVATSGMLGEGVDRLIDAIQDAYAVWNT 364

Query: 368 KLPFSIPSHK 377
           ++  +  +  
Sbjct: 365 RVSTAALNRW 374



 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +   I+G  N GKS+LFN L  + +A+V D PG TRD    +  L      I DTAG+ E
Sbjct: 3   FTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGEGRLGDLEFTIIDTAGLDE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                      ++T   +E AD ++ + +  +          + +   N   + +  KS+
Sbjct: 63  GAKGSLTARMQQQTETAIELADALMFVFDARAGLTPNDRAFADFARRANKPVVLVANKSE 122

Query: 331 LYS---------TYTEEYDHLISSFTGEGLEELINKIKSIL 362
             +                  IS+  GEGL EL + +++I+
Sbjct: 123 GKAGGIGAMESYALGLGDPVQISAEHGEGLSELYDALRAIM 163


>gi|323453254|gb|EGB09126.1| hypothetical protein AURANDRAFT_37344 [Aureococcus anophagefferens]
          Length = 540

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 16/156 (10%)

Query: 198 FLKNDISSHISQGKLGEII--RNGYKIVILGHSNAGKSSLFNALAK--KDVAIVTDIPGT 253
            L   I +  +Q K  + I  +    +  LG  N GKSSL N      +  AIV+D+ GT
Sbjct: 236 ALDASIEAKAAQIKTMDAIDAKPHVNVCFLGRPNVGKSSLLNRFLGPGETRAIVSDVAGT 295

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDI----VEKEGIKRTFLEVENADLILLLKEIN 309
           TRD +  +LD++G + +  DTAG+R    +     E E + R       AD++LL+ +  
Sbjct: 296 TRDAVDAELDVDGTIFRFVDTAGVRRKARVTKQGTEPEMVARALRTARLADVVLLVVDAT 355

Query: 310 ---SKKEISFPK-----NIDFIFIGTKSDLYSTYTE 337
              S ++ +  +         + +  K D Y    E
Sbjct: 356 QELSDQDAALAQRVADDGRACVVLANKWDAYEDKDE 391



 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 59/172 (34%), Gaps = 26/172 (15%)

Query: 222 IVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
           + I+G  N GKSSL N L  A K   I  +  G TRD +    +  G    + DT G+  
Sbjct: 71  VAIIGRPNVGKSSLVNRLCDAGKKGTIAVNEAGVTRDRVYQKAEWCGRTFDVVDTGGLLF 130

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNID-----FIFI 325
             E   +   E  ++  L +  A   +++ +  +           F +         +  
Sbjct: 131 EDEEGALFLDEIREQATLALREACACVVVVDGRAGSTRLDDDIARFLRRWPDQTLEVVLA 190

Query: 326 GTKSDLYSTYTE----------EYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K +      E                S+  G G+ E+++ +   L    +
Sbjct: 191 VNKCESAEREAELVADFWPLGLGEPRACSAIHGNGVAEVLDALLPALDASIE 242


>gi|260424846|ref|ZP_05733464.2| ribosome-associated GTPase EngA [Dialister invisus DSM 15470]
 gi|260403366|gb|EEW96913.1| ribosome-associated GTPase EngA [Dialister invisus DSM 15470]
          Length = 454

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 11/129 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +  I+G  N GKS+L N+L   + ++V D  GTTRD +      +G    + DTAG+R+
Sbjct: 189 IRTAIVGRPNVGKSTLINSLLGYERSLVADEMGTTRDAVDSVWKYKGKTFILVDTAGMRK 248

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISF--PKNIDFIFIGTK 328
               D+ +EK  + R+   ++N D+ + + + N       KK I +        I +  K
Sbjct: 249 KGKIDEPLEKYSVIRSIRAIDNCDVAIFVLDANDMLTEQDKKIIGYIHEAGKGLILMVNK 308

Query: 329 SDLYSTYTE 337
            D+    T 
Sbjct: 309 WDMIPKETN 317



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           + I+G  N GKS++ N LA+K V+IV DIPG TRD +  D+        + DT GI  R+
Sbjct: 18  VAIVGRPNVGKSTIINGLAQKRVSIVEDIPGVTRDRIYCDVRWLDREFTMIDTGGIEFRD 77

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDL 331
             D +     ++  L +E AD+IL + +          +   +        +    K D 
Sbjct: 78  EADQISDGIRQQAQLAMEEADVILFVVDARVGVQEDDQTIAGMLRRTGKPVVLCVNKVDS 137

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            +   + Y+           +S+    G  +L++KI      + +     I 
Sbjct: 138 ENQKMDTYEFYSLGIGDPMPVSAVNHLGFGDLLDKISEGFPPREEYDSPDII 189


>gi|194337372|ref|YP_002019166.1| small GTP-binding protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693397|sp|B4SED0|DER_PELPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|194309849|gb|ACF44549.1| small GTP-binding protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 437

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 11/147 (7%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           L + + S     K  +   +  ++ ++G  N GKSS  N+L   +  IV++IPGTTRD +
Sbjct: 157 LDDILESLPETEKQLQEKESAIQLAVVGRPNVGKSSFVNSLLGSNRLIVSNIPGTTRDAI 216

Query: 259 TIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE-- 313
                 +     + DTAG+R+    D  +E     RT   +E  D+ L++ +     E  
Sbjct: 217 DSRFIRKQQEFILIDTAGLRKRTKIDAGIEYYSSLRTEKAIERCDVALVMLDAAPGIEKQ 276

Query: 314 ------ISFPKNIDFIFIGTKSDLYST 334
                 ++  +    + +  K DL   
Sbjct: 277 DMKIINMAVERKKGALLLINKWDLIEK 303



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 19/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + ++  AIV   PG TRD    + + +G    + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRILRQRSAIVDPTPGVTRDRHIAEGEWQGKQFLLMDTGGYNADG 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPK-------NIDFIFIGTKS-- 329
           D +    +++T + + +AD+++ L ++ +    +++   +       +    F+  K   
Sbjct: 65  DTISMAMLEQTLMAIRDADIVIFLTDVRAGLSYEDLELGRLLQRTFQHKQLFFVVNKVET 124

Query: 330 -----DLYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKL 369
                D  S     +   + IS+  G G+ ++++ I   L    K+L
Sbjct: 125 PQLSLDAESFIKTGFTAPYFISARDGSGVADMLDDILESLPETEKQL 171


>gi|219684291|ref|ZP_03539235.1| ribosome-associated GTPase EngA [Borrelia garinii PBr]
 gi|219672280|gb|EED29333.1| ribosome-associated GTPase EngA [Borrelia garinii PBr]
          Length = 433

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 17/179 (9%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
              +    +L F     V     + +     FLK+++      G+         K+ I+G
Sbjct: 127 EFLAHKFHNLGFKRYFLVSALHRRGITKLRDFLKSEV------GRANIEDEVNIKVGIIG 180

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDI 283
             N+GKS+L N L+  +++IV+D PGTTRD +   L   G + +I DTAGIR     +++
Sbjct: 181 KPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKTKLTRNGKVFEIIDTAGIRRRARVNEV 240

Query: 284 VEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF---PKNIDFIFIGTKSDLYST 334
           VE   + R    ++  D++ LL ++     +  K+I+     K    I + +K DL   
Sbjct: 241 VEYYSVNRALKVIDMVDIVFLLIDVKEELTSQDKKIAHYVTKKGKGIIIVFSKWDLLEE 299



 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 16/169 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     +  +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNI--DFIFIGTKSDLYS 333
            D + K  +++    +E  DLILL+ ++N       + I   +      I +  K D   
Sbjct: 66  KDEISKIVVQKVLSSLEQVDLILLVLDVNEILLEDYEVIERLRKYTSKVILVLNKVDTKD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                +             S+    G+ +L + +KS +     +   +I
Sbjct: 126 KEFLAHKFHNLGFKRYFLVSALHRRGITKLRDFLKSEVGRANIEDEVNI 174


>gi|171742925|ref|ZP_02918732.1| hypothetical protein BIFDEN_02042 [Bifidobacterium dentium ATCC
           27678]
 gi|283456054|ref|YP_003360618.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           dentium Bd1]
 gi|171278539|gb|EDT46200.1| hypothetical protein BIFDEN_02042 [Bifidobacterium dentium ATCC
           27678]
 gi|283102688|gb|ADB09794.1| Bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           dentium Bd1]
          Length = 709

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 134/357 (37%), Gaps = 53/357 (14%)

Query: 82  EFHVH----GGIAVVNGILEELAKMPNLRLANPGEFSR-RAFENGKIDLLEAES----LA 132
           E   H      +  V  +L    +    R A+   FSR         D+    +    + 
Sbjct: 99  EVSSHVSKVSNVIPVRHVLIAAQRAYIAREASADSFSRGLGVVAEGRDITTVVAPDAEVR 158

Query: 133 DLISSETE-MQRRLSMEGMSG----------ELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
            L+++  E  Q R + +  SG          +  S    +      + +   +DL+FSE 
Sbjct: 159 ILLTAREEVRQARRAGQSASGVGTENVAARDKADSKVTNFTSAAEGVLTVDNSDLEFSET 218

Query: 182 EDVQNFSSKEVLNDI---LFLKNDISSHISQGKLGEI---------IRNGYK----IVIL 225
            DV      + + +     ++ N     + +G  G I         ++ G K    + ++
Sbjct: 219 LDVLVRIVDDAIEEQEYRQYVANLDDYELDEGDEGLIDGSSFVGGDLQAGPKPVGVLAVV 278

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     + +E
Sbjct: 279 GRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIE 338

Query: 286 KEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYST--Y 335
                +  + V+ AD ++L+ +    + S  E    +             K D   +   
Sbjct: 339 SAIASQAQMAVQLADAVVLVVDGQVGLTSTDERIVKMLRASGKPVTLAVNKVDDRESEYL 398

Query: 336 TEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           T E+        + IS+  G G+ EL++     L    K   F  PSH R +  + +
Sbjct: 399 TAEFWKMGMGEPYGISAMHGRGIGELLDVALESLKKAKKTSGFLTPSHLRRVALVGR 455



 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 107/297 (36%), Gaps = 51/297 (17%)

Query: 126 LEAESLADLISSETEMQRRLS---------MEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
            + E +   I+S+ +M  +L+           G++     +            +     +
Sbjct: 332 ADVEGIESAIASQAQMAVQLADAVVLVVDGQVGLTSTDERIVKMLRAS-GKPVTLAVNKV 390

Query: 177 DFSEEEDVQNFSSKEVLNDILFL-------KNDISSHISQGKLGEIIRNGY-------KI 222
           D  E E +     K  + +   +         ++     +        +G+       ++
Sbjct: 391 DDRESEYLTAEFWKMGMGEPYGISAMHGRGIGELLDVALESLKKAKKTSGFLTPSHLRRV 450

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKSSL N LA ++ ++V D+ GTTRD +   + ++G      DTAGI+    
Sbjct: 451 ALVGRPNVGKSSLLNQLAHEERSVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGIKRRLH 510

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDL 331
                E     RT   +E ++L L+L + +        K            + +  K DL
Sbjct: 511 KLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRAIVLVFNKWDL 570

Query: 332 YSTYTE---------EYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              +           E+D         +S+ TG     L N ++  L +  K++P  
Sbjct: 571 MDEFDRQRMERLWKTEFDRVTWAQRVNLSAKTGWHTNRLANAMRGALESWDKRIPTG 627


>gi|241764499|ref|ZP_04762520.1| small GTP-binding protein [Acidovorax delafieldii 2AN]
 gi|241366083|gb|EER60680.1| small GTP-binding protein [Acidovorax delafieldii 2AN]
          Length = 462

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 34/213 (15%)

Query: 206 HISQGKLGE--IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           H+ +    E    +   K+ + G  N GKS+L N    ++  +  D+PGTTRD +T+  +
Sbjct: 179 HLPEPDDAEQAADKGTIKLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAITVPFE 238

Query: 264 LEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS 315
             G   ++ DTAG+R      + +EK  + +T   +E+A+++LLL +      +    I+
Sbjct: 239 RNGQRFELVDTAGLRRKGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIA 298

Query: 316 ---FPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEGLEELIN 356
                     +    K D    Y  +                  H IS+   +GL  L  
Sbjct: 299 GYILESGRAVVLAVNKWDAVDEYQRQLLERSIETRLAFLKFAALHFISAKKRQGLGPLWA 358

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
            I         K+   + +       L + V++
Sbjct: 359 SIVQAHKAATCKMSTPVLTR-----LLLEAVQF 386



 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+LFN L K   AIV D  G TRD    +     +   + DT G   + 
Sbjct: 20  IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGKQGKHEYIVIDTGGFEPDA 79

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD-- 330
              + +E  K+T   V  AD+++ + +     S ++              + +  K++  
Sbjct: 80  SSGIYREMAKQTQQAVAEADVVIFVVDARAGVSAQDHDIANYLRRLGKPCVLVANKAEGM 139

Query: 331 -----LYSTYTEEYD--HLISSFTGEGLEELINKIKSILS 363
                L   Y       + +S+  G+G+  L++     L 
Sbjct: 140 LQGGQLAEFYELGLGEVYPVSAAHGQGIRGLVDLALEPLH 179


>gi|253999419|ref|YP_003051482.1| GTP-binding protein EngA [Methylovorus sp. SIP3-4]
 gi|313201441|ref|YP_004040099.1| small GTP-binding protein [Methylovorus sp. MP688]
 gi|253986098|gb|ACT50955.1| small GTP-binding protein [Methylovorus sp. SIP3-4]
 gi|312440757|gb|ADQ84863.1| small GTP-binding protein [Methylovorus sp. MP688]
          Length = 523

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 11/143 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+L NAL  ++  I  D PGTTRD + IDL+  G    I DTAG+R+ 
Sbjct: 179 KVAIVGRPNVGKSTLVNALLGQERVIAFDQPGTTRDSIHIDLERNGKHYTIIDTAGVRKR 238

Query: 281 D---DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
               + +EK  + +T   +E A++ +L+ +                       +    K 
Sbjct: 239 GKVFEAIEKFSVIKTIQAIEEANVAILVVDAQEGITEQDAHVAAYILEAGRALVVAINKW 298

Query: 330 DLYSTYTEEYDHLISSFTGEGLE 352
           D       ++         + L+
Sbjct: 299 DGLKEDERDWIKREIDRKLQFLD 321



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 18/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           IV++G  N GKS+LFN L K   A+V D+PG TRD              + DT G     
Sbjct: 5   IVLVGRPNVGKSTLFNRLTKSRDALVADLPGLTRDRHYGRGIGGDKPFLVVDTGGFEPLV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
           D  + KE  K+T L ++ AD+++ + +  +          +         +    K++  
Sbjct: 65  DSGILKEMAKQTLLAIDEADVVIFMVDGRNGLAPQDKVIADRLRKSQRPVLLAVNKTEGM 124

Query: 331 ---LYSTYTEEY----DHLISSFTGEGLEELIN 356
              + S    E        ISS  GEG+ +L+ 
Sbjct: 125 QRAIVSAEFHELGLGDPLSISSAHGEGVRDLVE 157


>gi|317009155|gb|ADU79735.1| GTP-binding protein EngA [Helicobacter pylori India7]
          Length = 462

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 39/222 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERAYAFSSF-----------------GMPKSFNISVSHNRGISALIDAVLNALNLN 170

Query: 394 SLNEKDCGLDIIAENLRLASVSLGK----------ITGCVDV 425
            + E+D   DI+ E+L   + +L +          I G V+V
Sbjct: 171 QIIEQDLDADIL-ESLETPNNALEETKEEEIIQVGIIGRVNV 211



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 102/233 (43%), Gaps = 32/233 (13%)

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           I + I+A L+      +        + + L   N   + + + K  EII+ G    I+G 
Sbjct: 156 ISALIDAVLNALNLNQIIEQDLDADILESLETPN---NALEETKEEEIIQVG----IIGR 208

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VE 285
            N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR    I  +E
Sbjct: 209 VNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRGKILGIE 268

Query: 286 KEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKSDLYSTYTE 337
           K  ++RT   +E + + LL+ ++++      ++IS   +      I I  K D+     E
Sbjct: 269 KYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYE 328

Query: 338 EY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           E                    S      ++E+ +KI  +     K++P S+ +
Sbjct: 329 EIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSLLN 381


>gi|171920931|ref|ZP_02932078.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|225550855|ref|ZP_03771804.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|171903162|gb|EDT49451.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|225380009|gb|EEH02371.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 442

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 11/125 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +  +K  I+G  N GKSSL N +  +   IV    G+TRD +  D         I DTAG
Sbjct: 172 QERFKFCIIGRPNVGKSSLTNTILGEQRMIVNPEAGSTRDSIDNDFSYHNKKYTIIDTAG 231

Query: 277 IRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
           +R      + VEK  + RT   +E + LILL+ + +            +++  NI  I +
Sbjct: 232 VRRKGKIVEAVEKYAVLRTQKAIERSQLILLVLDGSEPFKEQDEVVGGLAYDANIPTIIV 291

Query: 326 GTKSD 330
             K D
Sbjct: 292 VNKWD 296



 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 19/158 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSLFN +  +  +IV D PG TRD +    +       + DT GI  ++
Sbjct: 4   IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDVGNWLTRDFMLIDTGGIISSE 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS-----FPKNIDFIFIGTKSDL 331
           D  +    ++    +  A+ I+ L        N  K+I+       K+   I +  K + 
Sbjct: 64  DTYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAKDKKVILVVNKVES 123

Query: 332 YSTYTEEYD---------HLISSFTGEGLEELINKIKS 360
              Y  E +           IS+  G G+ +L++++  
Sbjct: 124 EKYYFNEGELYSFGFGKFFKISAEHGIGMGDLLDELVK 161


>gi|295100402|emb|CBK97947.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii L2-6]
          Length = 447

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + +AIV D PG TRD +  + +  G+   + DT GI  + 
Sbjct: 6   VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWSGHEFLLVDTGGIEPKA 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEISFP---KNIDFIFIGTKSD-- 330
            + +     ++  + ++ AD I+++ ++      + ++++      +   I    K D  
Sbjct: 66  TEGILAHMREQAQIAIDTADCIIMVVDVRNGLTAADEDVAHMLRRSHKPIILAVNKCDNV 125

Query: 331 ------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 LY  Y   +D ++  SS  G G  +L++ + + L      +   
Sbjct: 126 GETPMELYEFYNLGFDEVMPISSVHGHGTGDLLDAVCAHLDFSETVVEED 175



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 83/208 (39%), Gaps = 31/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +H+   +   +  +   + I+G  N GKSSL N +  ++  IV +  GTTRD 
Sbjct: 156 DLLDAVCAHLDFSET-VVEEDRIPVAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +   +D        +DTAG+R+     D +E+  + R    VE + + L+L +       
Sbjct: 215 IDTPVDNAYGKFIFTDTAGLRKRSNITDGLERYMVVRALAAVERSRVALILVDATVGFTE 274

Query: 309 --NSKKEISFPKNIDFIFIGTKSD-------------------LYSTYTEEYDHLISSFT 347
             +     +  +    I +  K D                    +S         IS+ T
Sbjct: 275 QDSKVAGYAHDQGKACIIVVNKWDAVEGKETNTMELQRRGYAECFSFMGYAPIIFISAQT 334

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPS 375
           G  + +L+  I+ + S    ++P  + +
Sbjct: 335 GYNVNKLMQLIRDVDSQNGARVPTGVLN 362


>gi|300022385|ref|YP_003754996.1| ribosome-associated GTPase EngA [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524206|gb|ADJ22675.1| ribosome-associated GTPase EngA [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 460

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + I+G  N GKS+LFN L     A+V+D+PG TRD      DL G  +++ DTAG+ E  
Sbjct: 2   VAIVGRPNVGKSTLFNRLTGTRAALVSDLPGLTRDRRDGVTDLFGVNLRLIDTAGLEEAR 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
              +     K+T   +E ADL+L + +  +           I+       + +  K++  
Sbjct: 62  QGSIADRMRKQTEQAIEAADLVLFVIDARAGVTGADTSFARIARQSGKPVVLVANKAEGR 121

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSIL 362
                  D           IS+  GEG+ +L   I + L
Sbjct: 122 KGTDGVLDAFSLGLGAPIAISAEHGEGIGDLATDIFAAL 160



 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 11/126 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  NAGKS+L NAL  +D  I    PG TRD +  +L  +G  + + DTAG+R 
Sbjct: 194 IRVAIVGRPNAGKSTLVNALLGEDRMITGPEPGLTRDSVASELSYKGQSILLFDTAGLRR 253

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTK 328
                +  EK         +  A++++LL +     E            +    +    K
Sbjct: 254 KAKITETAEKLAASDAVRSIRFAEVVVLLIDAERPFEHQDLTIGHRVTEEGRALVVAINK 313

Query: 329 SDLYST 334
            DL   
Sbjct: 314 WDLIPE 319


>gi|219685247|ref|ZP_03540067.1| ribosome-associated GTPase EngA [Borrelia garinii Far04]
 gi|219673343|gb|EED30362.1| ribosome-associated GTPase EngA [Borrelia garinii Far04]
          Length = 433

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 17/179 (9%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
              +    +L F     V     + +     FLK+++      G+         K+ I+G
Sbjct: 127 EFLAHKFHNLGFKRYFLVSALHRRGITKLRDFLKSEV------GRANIEDEVNIKVGIIG 180

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDI 283
             N+GKS+L N L+  +++IV+D PGTTRD +   L   G + +I DTAGIR     +++
Sbjct: 181 KPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKTKLTRNGKVFEIIDTAGIRRRARVNEV 240

Query: 284 VEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF---PKNIDFIFIGTKSDLYST 334
           VE   I R    ++  D++ LL ++     +  K+I+     K    I + +K DL   
Sbjct: 241 VEYYSINRALKVIDMVDIVFLLIDVKEELTSQDKKIAHYVTKKGKGIIIVFSKWDLLEE 299



 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 16/169 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     +  +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNI--DFIFIGTKSDLYS 333
            D + K  +++    +E  DLILL+ ++N       + I   +      I +  K D   
Sbjct: 66  KDEISKIVVQKVLSSLEQVDLILLVLDVNEILLEDYEIIERLRKYTSKVILVLNKVDTKD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                +             S+    G+ +L + +KS +     +   +I
Sbjct: 126 KEFLAHKFHNLGFKRYFLVSALHRRGITKLRDFLKSEVGRANIEDEVNI 174


>gi|121604778|ref|YP_982107.1| GTP-binding protein EngA [Polaromonas naphthalenivorans CJ2]
 gi|166225835|sp|A1VNF8|DER_POLNA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|120593747|gb|ABM37186.1| small GTP-binding protein [Polaromonas naphthalenivorans CJ2]
          Length = 445

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG+R 
Sbjct: 180 IKLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFEHAGQKFELIDTAGLRR 239

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTK 328
                + +EK  + +T   +ENA+++LLL +      +    I+          +    K
Sbjct: 240 KGKVFEAIEKFSVVKTLQAIENANVVLLLLDATQGVTDQDAHIAGYILESGRAVVLAVNK 299

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D    Y  E                  H IS+   +GL  +   I    ++  +K+   
Sbjct: 300 WDAVDAYQRELLQRSIETRLGFLKFASIHHISAIKRQGLGPVWKSIIQAHASANRKMSTP 359

Query: 373 IPSH 376
           + + 
Sbjct: 360 VLTR 363



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 20/154 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   AIV D  G TRD    +  L  +   + DT G  E D
Sbjct: 5   IALVGRPNVGKSTLFNRLTKTRDAIVADFAGLTRDRHYGNGKLGPHEYIVIDTGGF-EPD 63

Query: 282 DI--VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDL 331
            +  + KE  ++T   V  +D+++ + +     S ++              +    K++ 
Sbjct: 64  AVTGIYKEMARQTRQAVAESDVVIFVVDARAGISAQDYDIANYLRKLGKPTVLAANKAEG 123

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELIN 356
               T+  +            S+  G+G+  L++
Sbjct: 124 LPEGTQVSEFFELGLGEMLAVSASHGQGMRMLVD 157


>gi|116073379|ref|ZP_01470641.1| GTP-binding protein Era [Synechococcus sp. RS9916]
 gi|116068684|gb|EAU74436.1| GTP-binding protein Era [Synechococcus sp. RS9916]
          Length = 320

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 24/203 (11%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           +   G   R+G+ + ++G  N GKS+L N L    VAI + +  TTR+ L   L  E   
Sbjct: 11  KADQGSTFRSGF-VALIGRPNVGKSTLVNQLVGDKVAITSPVAQTTRNRLRAILTTETAQ 69

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNI 320
           + + DT GI +   ++ +  ++     +   D +LLL E   +          +   + +
Sbjct: 70  LILVDTPGIHKPHHLLGERLVQSARAAIGEVDQVLLLLEGCEQPGKGDAFIVNLLQQQRL 129

Query: 321 DFIFIGTKSDLYSTYTE-EYD--------------HLISSFTGEGLEELINKIKSILSNK 365
               +  K D     T  E D              H  S+ +GEG  +L+  I + +   
Sbjct: 130 PVQVVLNKWDRVPVETRPEADAAYRELLSTTNWPLHHCSALSGEGCPDLVEAISAQMPEG 189

Query: 366 FKKLPFSIPSHKRHLYHLSQTVR 388
            +  P  + S +     +++ +R
Sbjct: 190 PQLYPPDMVSDQPERLLMAELIR 212


>gi|288941004|ref|YP_003443244.1| ribosome-associated GTPase EngA [Allochromatium vinosum DSM 180]
 gi|288896376|gb|ADC62212.1| ribosome-associated GTPase EngA [Allochromatium vinosum DSM 180]
          Length = 467

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 16/150 (10%)

Query: 197 LFLKNDISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             L + +  H+ +       +I  +  K+ ++G  NAGKS+L N L  ++  +  D PGT
Sbjct: 152 RGLIDHVFEHLPESAEEDAADIEHDRIKVAVVGRPNAGKSTLINRLLGEERQVTFDSPGT 211

Query: 254 TRDVLTIDLDLEGY--LVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI 308
           TRD + I  +  G+     + DTAG+R      D +EK  + +T   +E A++I+L+ + 
Sbjct: 212 TRDSIFIPFERPGHDQRYTLIDTAGLRRRARVHDPIEKFSVIKTLQAIEEANVIILVIDA 271

Query: 309 NS---KKEISFP-----KNIDFIFIGTKSD 330
           +    +++ +            +    K D
Sbjct: 272 HEGIGEQDATLAGHIIESGRALVVAINKWD 301



 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 65/173 (37%), Gaps = 17/173 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD       +      I DT GI    
Sbjct: 5   ITLIGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRQYGIGRIGPRPYVIVDTGGIGTAA 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTKSDLYS 333
           + +E    ++    VE AD +L + +       ++I   +           +  KSD   
Sbjct: 65  EGIEALMERQVQRAVEEADHLLFMVDTRDGCTPEDIDIAQRLRRLGKPITLVVNKSDTMD 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                 D            S+  G G+  LI+ +   L    ++    I   +
Sbjct: 125 PTLAVTDFHRLGLGDPWAASATQGLGVRGLIDHVFEHLPESAEEDAADIEHDR 177


>gi|325068743|ref|ZP_08127416.1| GTP-binding protein Der [Actinomyces oris K20]
          Length = 533

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 90/209 (43%), Gaps = 31/209 (14%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           EVL+ ++ +  ++S+  +    G++ R    I ++G  N GKSSL N++A ++  +V + 
Sbjct: 247 EVLDAVMEVLPEVSAVATAAPEGDLHR----IALVGRPNVGKSSLLNSIAGRERVVVNET 302

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKE 307
            GTTRD +   ++L+G      DTAGIR   +     +   + RT   ++ A++ ++L +
Sbjct: 303 AGTTRDPVDEIIELDGRQWVFVDTAGIRRRVKQSRGADYYAVLRTQGAIDKAEVAVVLLD 362

Query: 308 INSK--------KEISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLISSF------ 346
            +           + +       + +  K DL     +       E+D    S+      
Sbjct: 363 ASEPISEQDVRVVQQAVDAGRALVLVNNKWDLVDEERQKMLLWEVEHDLAHVSWAPHINL 422

Query: 347 ---TGEGLEELINKIKSILSNKFKKLPFS 372
              TG     L+  + + L     ++P  
Sbjct: 423 AARTGWHTNRLVRALDAALEGWTTRVPTG 451



 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 79/203 (38%), Gaps = 20/203 (9%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQG--KLGEIIRNGYKI-VILGHSNAGKSSLFNA 238
           ED++  + +  L D    + D++   + G    G+ +  G  +  ++G  N GKS+L N 
Sbjct: 56  EDLRAQAMRAGLADYELDEEDLALLEADGGLPTGDSVEPGLPVLAVVGRPNVGKSTLVNR 115

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           +  +  A+V D PG TRD ++   +  G    I DT G       ++     +  + VE 
Sbjct: 116 VLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVDVAGLDAAVATQAEIAVEM 175

Query: 299 ADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHLI------- 343
           AD +LL+ +       +  +            +    K D  +   +             
Sbjct: 176 ADAVLLVVDAQVGITETDARVVRMLRRSGKPVVLAANKVDSPAQEGDAATLWNLGLGEPF 235

Query: 344 --SSFTGEGLEELINKIKSILSN 364
             S+  G G  E+++ +  +L  
Sbjct: 236 PVSALHGRGSGEVLDAVMEVLPE 258


>gi|284047992|ref|YP_003398331.1| GTP-binding protein Era [Acidaminococcus fermentans DSM 20731]
 gi|283952213|gb|ADB47016.1| GTP-binding protein Era [Acidaminococcus fermentans DSM 20731]
          Length = 308

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 77/190 (40%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L  + VAI++D P TTR+ +   L  E   +   DT G+ +  
Sbjct: 14  VAVVGRPNAGKSTLVNHLVGEKVAIISDRPQTTRNRILSILSTEEAQMVFLDTPGLHKPQ 73

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSD-- 330
           D + +  ++     ++  D++L + + + K+          +    +   I +  K D  
Sbjct: 74  DKLGEHMVQAALNAIKEVDVVLFVVDASEKRGKGEQVILERLKEECHAPVILVLNKIDRL 133

Query: 331 --------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                   +   + +EY        S+   E    L+ +I   L       P  + + + 
Sbjct: 134 PDKAVLLPIIDKFRKEYPFRSVLTLSALEDEDFSPLLQEIVRCLPEGPSFYPEDMYTDQP 193

Query: 379 HLYHLSQTVR 388
                ++ VR
Sbjct: 194 ERVMAAEIVR 203


>gi|254526548|ref|ZP_05138600.1| small GTP-binding protein domain [Prochlorococcus marinus str. MIT
           9202]
 gi|221537972|gb|EEE40425.1| small GTP-binding protein domain [Prochlorococcus marinus str. MIT
           9202]
          Length = 457

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
               + I+G  N GKSSL N++  +  AIV+DI GTT D +   +       KI DTAGI
Sbjct: 175 EKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNYWKIIDTAGI 234

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIG 326
           R   ++    E  GI R F  ++ +D+ +L+ +      +  ++++     +    I + 
Sbjct: 235 RRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAVDGVTDQDQKLAGRIEEQGRACIIVV 294

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
            K DL            SS   +  +EL +K+     +  K +  S  + +R        
Sbjct: 295 NKWDLVEK--------NSSTIYQVEKELRSKL--YFLHWSKMIFISALTGQRVDNIFEHA 344

Query: 387 VRYLEM 392
           +  +  
Sbjct: 345 LNAVNQ 350



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   +I DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD-- 330
           D     E   + FL +E A L LL+ + N   +  ++S  K     +   I    K +  
Sbjct: 66  DSEFLPEIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNKCEST 125

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINK-IKSILSNKFKKLPFSIPS 375
            L  +   E+        + +S+  G G  +L++  I  +  N  +     I  
Sbjct: 126 TLGISLASEFWKLGLGEPNPVSAIHGSGTGDLLDLVIGELPENNIQDDEEKIMM 179


>gi|326384755|ref|ZP_08206432.1| GTP-binding protein Der [Gordonia neofelifaecis NRRL B-59395]
 gi|326196563|gb|EGD53760.1| GTP-binding protein Der [Gordonia neofelifaecis NRRL B-59395]
          Length = 479

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 113/298 (37%), Gaps = 39/298 (13%)

Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR-RLSMEGMSGELSSLYGQWI 162
            L +A   E++ R           A+++  ++ +         ++  +     +      
Sbjct: 109 GLAIAAQAEYAMRT----------ADAIVVVVDATVGATATDEAVARVLRRSKTPVLLAA 158

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK- 221
           +K+   R   EA   +S         S         L + I   + +         G + 
Sbjct: 159 NKVDSERMEAEAASLWSLGLGEPITISAAHGRGTGDLLDKILDALPETPRERFAVGGPRR 218

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N LA ++ A+V ++ GTT D +   ++L G   +  DTAG+R   
Sbjct: 219 VALVGKPNVGKSSLLNKLAGEERAVVDNVAGTTVDPVDEMIELGGKPWQFVDTAGLRRKV 278

Query: 282 D---IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD 330
                 E     RT   +++A++ LLL + +   +++++             + +  K D
Sbjct: 279 RNATGHEYYASLRTRAALDSAEVALLLIDASQTITEQDLRVLSMIIDSGRALVVVFNKWD 338

Query: 331 LYS-----TYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L           E D             IS+ TG  +++L+  ++  L +  K++   
Sbjct: 339 LVDEDRRHELDNEIDRELARVPWARRVNISAMTGRSVQKLVPALEGALESWDKRISTG 396



 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 69/184 (37%), Gaps = 18/184 (9%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           D+S  ++    GE       + I+G  N GKS+L N +  +  A+V D+PG TRD ++  
Sbjct: 27  DLSEFLTDEAAGESAVLPV-LAIVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYK 85

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKE 313
            +  G    ++DT G       +      +    +  AD I+++ +          +   
Sbjct: 86  AEWTGKQFMVTDTGGWEPDAKGMGLAIAAQAEYAMRTADAIVVVVDATVGATATDEAVAR 145

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
           +        +    K D      E              IS+  G G  +L++KI   L  
Sbjct: 146 VLRRSKTPVLLAANKVDSERMEAEAASLWSLGLGEPITISAAHGRGTGDLLDKILDALPE 205

Query: 365 KFKK 368
             ++
Sbjct: 206 TPRE 209


>gi|313665450|ref|YP_004047321.1| ribosome-associated GTPase EngA [Mycoplasma leachii PG50]
 gi|312949987|gb|ADR24583.1| ribosome-associated GTPase EngA [Mycoplasma leachii PG50]
          Length = 435

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN + K+  +IV + PG TRD +  + +       + DT GI    
Sbjct: 6   VAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSNAEWLTREFILVDTGGISIDQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
            +   E   +T + +E AD+I+ + +  ++ +        I        I    K D  +
Sbjct: 66  QLFSNEIQIQTQIAIEQADVIIFVVDFLNRLDKDDKMIAKILHKSKKPVILAINKYDKKT 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKL 369
                Y+ +          SS  G G+ +L++K+ S +S     L
Sbjct: 126 IDDHNYEFMNLGFSDLYFISSTHGIGIGDLLDKVISYISKNDADL 170



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 12/153 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + S+IS+    ++  +  KI I+G  N GKSSL N+L  ++  IV++I GTT D 
Sbjct: 154 DLLDKVISYISKND-ADLKDDSTKIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           + I          + DTAGIR+       VEK    R+   + N+D++LL+ +       
Sbjct: 213 VDISFSYNKNKYTVIDTAGIRKKSKLGQTVEKYSYLRSLSAITNSDIVLLMIDATKPITD 272

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEY 339
                  + + +    I +  K DL     E+ 
Sbjct: 273 QDTNIGGLIYDEKKPVIIVVNKWDLVKNKQEQI 305


>gi|296446239|ref|ZP_06888186.1| ribosome-associated GTPase EngA [Methylosinus trichosporium OB3b]
 gi|296256276|gb|EFH03356.1| ribosome-associated GTPase EngA [Methylosinus trichosporium OB3b]
          Length = 468

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 18/171 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L      I DTAG+ E
Sbjct: 6   FTLAIIGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGEARLADLRFTIIDTAGLEE 65

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                +E     +T   +E+AD IL + +             ++        +    KS+
Sbjct: 66  GASATLEGRMRAQTEAAIESADAILFMIDARVGVTPDDKYFADLVRRAGKKVVLAANKSE 125

Query: 331 -------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  L  +Y         +S+  GEGL EL + +   L    +     
Sbjct: 126 GKKGEAGLVESYELGLGDPVPLSAEHGEGLGELYDALLEALPEATQPPDED 176



 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 70/187 (37%), Gaps = 29/187 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I ++G  NAGKS+L N L  +D  +     G TRD + ++       +K+ DTAG+R+
Sbjct: 200 LRIAVVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIGVEFRWRDREMKLFDTAGLRK 259

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
                D +EK         V  +++++LL +     E        ++  +    +    K
Sbjct: 260 RARVVDKLEKLAGADALRAVRFSEVVVLLLDSAIPFEKQDLTIADLAAREGRAVVIALGK 319

Query: 329 SD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D                  L           +S  TG GLE L+  +        +++ 
Sbjct: 320 WDAVDDPGTRLAKLREEAERLLPQIRGCPVVPVSGATGYGLEGLMRAVLEAHEVWNRRIS 379

Query: 371 FSIPSHK 377
            +  +  
Sbjct: 380 TARLNRW 386


>gi|90418692|ref|ZP_01226603.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90336772|gb|EAS50477.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 469

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 70/164 (42%), Gaps = 18/164 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS+LFN L  K +A+V D PG TRD  T D  L     ++ DTAG+ E
Sbjct: 2   VTIAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRRTGDATLLDLDFEVVDTAGLEE 61

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
              D +E     +T   + +ADL L + ++ +          EI        I +  KS+
Sbjct: 62  AGADTLEGRMRTQTETAIASADLCLFMIDVKAGVMPQDRAFVEIMRRTAGKVILVANKSE 121

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNK 365
                    D           IS+  G G+ EL + I   L  +
Sbjct: 122 ARGAEAGMLDAFELGLGEPIGISAEHGVGMGELRDAILEALGEE 165



 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 85/243 (34%), Gaps = 44/243 (18%)

Query: 159 GQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN 218
           G+  D +           D  E E        E L D+    +++       K       
Sbjct: 152 GELRDAILEALGEETFADDTPEPE--------EALVDVPVEDDEVEPVYDATK------- 196

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             +I I+G  NAGKS+L N    +D  +     G TRD +  + +  G  +K+ DTAG+R
Sbjct: 197 PLRIAIVGRPNAGKSTLINRFLGEDRMLTGPEAGITRDSIASEWEWRGRTIKVFDTAGMR 256

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGT 327
               +    EK  +      ++ A++++++ +     E        +   +    +    
Sbjct: 257 RKAKVQEKLEKLSVADGLRAIKFAEVVVVVFDATIPFERQDMSIVDLVMREGRAPVIAFN 316

Query: 328 KSDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           K DL     E                       +S  TGEG+E L+  I        K++
Sbjct: 317 KWDLIEDRQEVLADLREKTDRLLPQARGIRAITVSGETGEGVERLMKAIVDTHEVWNKRI 376

Query: 370 PFS 372
             +
Sbjct: 377 STA 379


>gi|210135034|ref|YP_002301473.1| GTP-binding protein EngA [Helicobacter pylori P12]
 gi|238058975|sp|B6JM65|DER_HELP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|210133002|gb|ACJ07993.1| GTP-binding protein-like protein [Helicobacter pylori P12]
          Length = 462

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 39/222 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERAYAFSSF-----------------GTPKSFNISVSHNRGISALIDAVLNALNLN 170

Query: 394 SLNEKDCGLDIIAENLRLASVSLGK----------ITGCVDV 425
            + E+D   DI+ E+L   + +L +          I G V+V
Sbjct: 171 QIIEQDLDADIL-ESLETPNNALEETKEEEIIQVGIIGRVNV 211



 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 114/270 (42%), Gaps = 34/270 (12%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           + + I ++ E +R  +        S       ++   I + I+A L+      +      
Sbjct: 121 VINKIDNDKEKERAYAFSSFGTPKSFNISVSHNR--GISALIDAVLNALNLNQIIEQDLD 178

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             + + L   N   + + + K  EII+ G    I+G  N GKSSL NAL KK+ ++V+ +
Sbjct: 179 ADILESLETPN---NALEETKEEEIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSV 231

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEI 308
            GTT D +   + +    +   DTAGIR    I  +EK  ++RT   +E + + LL+ ++
Sbjct: 232 AGTTIDPIDETILIGDQKICFVDTAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDV 291

Query: 309 NSK-----KEISFPKNID---FIFIGTKSDLYSTYTEEY---------------DHLISS 345
           ++      ++IS   +      I I  K D+     EE                    S 
Sbjct: 292 STPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSC 351

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                ++E+ +KI  +     K++P S+ +
Sbjct: 352 LKARHIDEIKHKIIEVYECFSKRIPTSLLN 381


>gi|157412804|ref|YP_001483670.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9215]
 gi|166920102|sp|A8G3A3|DER_PROM2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157387379|gb|ABV50084.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str.
           MIT 9215]
          Length = 457

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 22/206 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   + +  +         + I+G  N GKSSL N++  +  AIV+DI GTT D 
Sbjct: 156 DLLDLVIGELPENNI-RDDEEKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDS 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI-----N 309
           +   +       KI DTAGIR   ++    E  GI R F  ++ +D+ +L+ +      +
Sbjct: 215 IDTLIKKGDNYWKIIDTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAVDGVTD 274

Query: 310 SKKEIS---FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
             ++++     +    I +  K DL            SS   +  +EL +K+     +  
Sbjct: 275 QDQKLAGRIEEQGRACIIVVNKWDLVEK--------NSSTIYQVEKELRSKL--YFLHWS 324

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEM 392
           K +  S  + +R        +  +  
Sbjct: 325 KMIFISALTGQRVDNIFEHALNAVNQ 350



 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   +I DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD-- 330
           D     E   + FL +E A L LL+ + N   +  ++S  K     +   I    K +  
Sbjct: 66  DSEFLPEIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNKCEST 125

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINK-IKSILSNKFKKLPFSIPS 375
            L  +   E+        + +S+  G G  +L++  I  +  N  +     I  
Sbjct: 126 TLGISLASEFWKLGLGEPNPVSAIHGSGTGDLLDLVIGELPENNIRDDEEKIMM 179


>gi|83319844|ref|YP_424546.1| GTP-binding protein EngA [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|123535633|sp|Q2SRR7|DER_MYCCT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|83283730|gb|ABC01662.1| GTP-binding protein engA [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 435

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 12/153 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + S+IS+  + E+  +  KI I+G  N GKSSL N+L  ++  IV++I GTT D 
Sbjct: 154 DLLDKVISYISKNDV-ELKDDSTKIAIIGKPNVGKSSLVNSLVNENRMIVSEIEGTTLDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           + I          + DTAGIR+       VEK    R+   + N+D++LL+ +       
Sbjct: 213 VDISFSYNKKKYIVIDTAGIRKKSKLGQTVEKYSYLRSLSAIANSDIVLLMIDATKPITD 272

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEY 339
                  + + +    I +  K DL     E+ 
Sbjct: 273 QDTNIGGLIYDEKKPVIIVVNKWDLIKNKQEQI 305



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN + K+  +IV + PG TRD +  + +       + DT GI    
Sbjct: 6   VAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSNAEWLTREFILIDTGGISVDQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
            +   E   +T + +E AD+I+ + +  ++ +        I        I    K D  +
Sbjct: 66  QLFSNEIQIQTQIAIEQADVIIFVVDFLNRLDKDDKIIAKILHKSKKPVILAINKYDKKT 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
                Y+ +          SS  G G+ +L++K+ S +
Sbjct: 126 IDEHNYEFMNLGFSDLYFISSTHGIGIGDLLDKVISYI 163


>gi|294012485|ref|YP_003545945.1| GTP-binding protein EngA [Sphingobium japonicum UT26S]
 gi|292675815|dbj|BAI97333.1| GTP-binding protein EngA [Sphingobium japonicum UT26S]
          Length = 456

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD      +L G    I DTAG  + D
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRREGQANLLGVDFTIIDTAGYEDED 64

Query: 282 DIVE-KEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLY 332
                     +T   VENAD+ L + +  +      +EI+      +   + +  K++  
Sbjct: 65  PQTLPGRMRMQTQAAVENADVALFVVDARAGITPLDEEIARWLREGDAPVVLMANKAEGK 124

Query: 333 S---------TYTEEYDHLISSFTGEGLEELINKI 358
           +         +         S+  G+GL +L   +
Sbjct: 125 AGDDGVMEAFSLGLGDPVPFSAEHGQGLADLFQAL 159



 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 36/199 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-----EGYLVKISDT 274
            K+ I+G  NAGKS+L N L  ++  +     G TRD + +D            V++ DT
Sbjct: 185 LKLAIVGRPNAGKSTLINRLLGENRLLTGPEAGITRDSIAVDWQWTDPDGNERPVRLIDT 244

Query: 275 AGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFI 323
           AG+R+     D +EK  +      V  A++++LL +     E            +    +
Sbjct: 245 AGMRKRAKVQDKLEKLAVSDGLNAVNFAEVVVLLLDSTRGLEAQDLRIADKVIEEGRALV 304

Query: 324 FIGTKSDLYSTYTEEY------------------DHLISSFTGEGLEELINKIKSILSNK 365
               K D     +  Y                     +S+ TG+GL++LI       +  
Sbjct: 305 VALNKWDTVENGSALYQGIKQALSDGLAQIRGVPIMTVSAATGKGLDDLIRVAFETRTAW 364

Query: 366 FKKLPFSIPSH--KRHLYH 382
            +++   I +   +R L  
Sbjct: 365 SQRVSTGILNRWFERALEA 383


>gi|153853792|ref|ZP_01995148.1| hypothetical protein DORLON_01139 [Dorea longicatena DSM 13814]
 gi|149753542|gb|EDM63473.1| hypothetical protein DORLON_01139 [Dorea longicatena DSM 13814]
          Length = 298

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 22/216 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  +   +   D
Sbjct: 3   KDYKSGF-VTLIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVLTTDDGQIVFVD 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKN--IDFIFI 325
           T GI +  + + +  +      +   D++L L E         +  IS  K      + +
Sbjct: 62  TPGIHKAKNKLGEYMVNVAERTLNEVDVVLWLVEPTTFIGAGEQHIISQLKKVTTPVVLV 121

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D           + Y + YD      +S+  G+  +EL+  I   L    +     
Sbjct: 122 INKIDSVKKEDVLPAIAAYKDVYDFAEIVPVSARNGDNTDELVKVIMKYLPYGPQFYDED 181

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
             + +     +++ +R   +  L E+      +A +
Sbjct: 182 TITDQPERQIVAELIREKALHCLQEEIPHGIAVAID 217


>gi|255086559|ref|XP_002509246.1| predicted protein [Micromonas sp. RCC299]
 gi|226524524|gb|ACO70504.1| predicted protein [Micromonas sp. RCC299]
          Length = 468

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 78/201 (38%), Gaps = 34/201 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278
            K+ I+G  N GKSSL N LA    +IV+D  GTTRD +  D+   +G    + DTAGIR
Sbjct: 198 LKVAIIGRPNVGKSSLLNQLAGDARSIVSDYSGTTRDTIDSDVIGADGKKYTLIDTAGIR 257

Query: 279 E------TDDIVEKEGIKRTFLEVENADLILLLKEINS---------KKEISFPKNIDFI 323
                  + D  E   + R    +  AD+++L+ +             +  +  +    +
Sbjct: 258 RRTSVAASKDAPESLAVGRALQAMRRADVVVLVIDAEEGPSQQDFVLSERAAVQEGCALV 317

Query: 324 FIGTKSDLYSTYT---EEYDH---------------LISSFTGEGLEELINKIKSILSNK 365
               K D     T    EY                   S+ TG+ +++++        + 
Sbjct: 318 LCVNKWDRIDKDTYSMNEYTKTLRSKLRVFEWASVVYTSALTGQRVQKVLQAAAEASVHH 377

Query: 366 FKKLPFSIPSHKRHLYHLSQT 386
            K+L  +  +       L ++
Sbjct: 378 RKRLSTATLNSVIQEATLWKS 398



 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%)

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
             N GKS+LFN L     AIV D PG TRD + I          + DT G+       E
Sbjct: 7   TPNVGKSALFNRLTGTKRAIVYDQPGVTRDRMYIRAFWGDTEFMMVDTGGLESLPGSPE 65


>gi|159902929|ref|YP_001550273.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9211]
 gi|226706248|sp|A9BE09|DER_PROM4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|159888105|gb|ABX08319.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str.
           MIT 9211]
          Length = 456

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 11/150 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   +   +  E      ++ I+G  N GKSSL N++  +  AIV+ I GTTRD 
Sbjct: 156 ELLDQVILLLPSKESSEEEDEPIQLAIIGRPNVGKSSLLNSICGETRAIVSSIRGTTRDT 215

Query: 258 LTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI---NSK 311
           +   L  E    K+ DTAGI   R      E  GI R+   +E +D+ LL+ +     ++
Sbjct: 216 IDTLLKREQQAWKLIDTAGIRRRRSVSYGPEYFGINRSLKAIERSDVCLLVIDALDGVTE 275

Query: 312 KEISFP-----KNIDFIFIGTKSDLYSTYT 336
           ++         +    + +  K D     T
Sbjct: 276 QDQRLAGRIEQEGKACLVVVNKWDAVEKDT 305



 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 21/162 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L     AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCGSREAIVDDQPGVTRDRTYQDAFWADREFKVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTK---- 328
           +     E  ++  L +  A + L++ +         K+  S+ ++     +    K    
Sbjct: 66  ESEFLPEIRQQAKLALSEASVALIVVDGQEGVTTADKEIASWLRHCECPTLVAVNKCESP 125

Query: 329 -------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +D +S    E  + +S+  G G  EL++++  +L 
Sbjct: 126 EQGLAMAADFWSLGLGE-PYPVSAIHGSGTGELLDQVILLLP 166


>gi|240047358|ref|YP_002960746.1| GTP-binding protein EngA [Mycoplasma conjunctivae HRC/581]
 gi|239984930|emb|CAT04923.1| GTP-binding protein EngA [Mycoplasma conjunctivae]
          Length = 435

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 31/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++I +++S     +   N +K+ I+G  NAGKS+L N L K + +I ++IPGTTRD 
Sbjct: 151 DLLDEIIANMSFSDKSD--DNLFKLAIIGKPNAGKSTLLNKLVKSERSITSNIPGTTRDS 208

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINSK--- 311
           ++    +  + ++I DTAGI     +VE      + R F  ++ ADL L++ + +     
Sbjct: 209 VSSKWVVNNHELEIVDTAGIIRKSKVVESVDFYALLRAFNSLDEADLSLVIVDASQPLSH 268

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
                   +F KN   I +  K DL    T                        +S+ TG
Sbjct: 269 FDSRLSGYAFEKNKPIILVINKWDLIEKETNTQHEFVKKIKNNYKFIDWAPIVFLSAKTG 328

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSH 376
           E + +L   I  +  N  K++  ++ + 
Sbjct: 329 EKIHKLAETIIKVKENLKKRISTNVLNR 356



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 15/167 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN +  K  +I   +PG TRD +       G    I DT GI   +
Sbjct: 5   VALIGKPNVGKSTLFNKIIGKKKSITDSMPGVTRDRIYAKTTWLGKTFNIIDTGGIEIEN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKK----EISFPKNIDFIFIGTKSDLYS 333
              +     ++ + +E A +I+L+ +    I+S      ++    N   + +  K +   
Sbjct: 65  RTFQDLIQMQSKVAIEEAQVIVLVLDGQNAIDSDDYYVVDLLRKSNKKVLVVANKLEGRK 124

Query: 334 TYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           ++         E+   IS+  GEG+ +L+++I + +S   K      
Sbjct: 125 SFDTSIYSLGFEHIFPISAIHGEGVGDLLDEIIANMSFSDKSDDNLF 171


>gi|296393716|ref|YP_003658600.1| ribosome-associated GTPase EngA [Segniliparus rotundus DSM 44985]
 gi|296180863|gb|ADG97769.1| ribosome-associated GTPase EngA [Segniliparus rotundus DSM 44985]
          Length = 450

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 17/179 (9%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +     +    I I+G  N GKS+L N    +  A+V D+PG TRD ++ D +  G    
Sbjct: 3   EQKRAEQRLPVIAIVGRPNVGKSTLVNRFVGRRAAVVEDVPGVTRDRVSYDAEWGGRSFL 62

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPK-----NIDF 322
           + DT G       +     ++  L +  AD+ILL+ +  +     + +  K         
Sbjct: 63  VQDTGGWEPDATGIGLSIAQQAELAMATADVILLVVDAQAGATGVDEALAKSLRRSKKPV 122

Query: 323 IFIGTKSDLYSTYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +G KSD      E            + +S+  G+G  +L++     +     +    
Sbjct: 123 FLVGNKSDNPQIENESSGLWSLGLGRPYPVSALHGKGSGDLLDAALEAVPAVLAREDEG 181



 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 80/202 (39%), Gaps = 30/202 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                + + +++   G   R   ++ ++G  N GKSSL N L+ ++ ++V  + GTT D 
Sbjct: 166 AALEAVPAVLAREDEGPRPR---RVALVGRPNVGKSSLINKLSGENRSVVDSVAGTTVDP 222

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +   + L+G   +  DTAG+R         E     RT   +E A+++++L + +     
Sbjct: 223 VDSLIALDGEEWQFVDTAGLRRKVGQASGHEFYAAVRTKSAIEAAEVVIVLIDASVPLTE 282

Query: 315 SFPK--------NIDFIFIGTKSDLYS-----TYTEEYD-----------HLISSFTGEG 350
              +            +    K DL           E D             IS+ +G  
Sbjct: 283 QDQRVFGMVGEAGRAMVIACNKWDLVDEDRRHELERELDRGLTRVTWAPRVNISALSGRA 342

Query: 351 LEELINKIKSILSNKFKKLPFS 372
           + +L   ++  L +  K++P  
Sbjct: 343 VHKLAPALRVALDSWEKRIPTG 364


>gi|42560947|ref|NP_975398.1| GTP-binding protein EngA [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|81829393|sp|Q6MTJ6|DER_MYCMS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|42492444|emb|CAE77040.1| conserved GTPase of unknown function [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301321230|gb|ADK69873.1| ribosome-associated GTPase EngA [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 435

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN + K+  +IV + PG TRD +  + +       + DT GI    
Sbjct: 6   VAIIGRPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSNAEWLTREFILVDTGGISIDQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
            +   E   +T + +E AD+I+ + +  ++ +        I        I    K D  +
Sbjct: 66  QLFSNEIQIQTQIAIEQADVIIFVVDFLNRLDKDDKMIAKILHKSKKPVILAINKYDKKT 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
                Y+ +          SS  G G+ +L++K+ S +
Sbjct: 126 IDDHNYEFMNLGFSDLYFISSTHGIGIGDLLDKVISYI 163



 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 12/153 (7%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + S+IS+  + ++  +  KI I+G  N GKSSL N+L  ++  IV++I GTT D 
Sbjct: 154 DLLDKVISYISKNDV-DLKDDSTKIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDA 212

Query: 258 LTIDLDLEGYLVKISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           + I          + DTAGIR+       VEK    R+   + N+D++LL+ +       
Sbjct: 213 VDISFSYNKNKYTVIDTAGIRKKSKLGQTVEKYSYLRSLSAITNSDIVLLMIDATKPITD 272

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEY 339
                  + + +    I +  K DL     E+ 
Sbjct: 273 QDTNIGGLIYDEKKPVIIVVNKWDLVKNKQEQI 305


>gi|89068274|ref|ZP_01155684.1| GTP-binding protein EngA [Oceanicola granulosus HTCC2516]
 gi|89046191|gb|EAR52249.1| GTP-binding protein EngA [Oceanicola granulosus HTCC2516]
          Length = 488

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLADLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ ++    + T   VE AD+ L L +  +          +I   K+   I    K++
Sbjct: 63  ATDESLQGRMRRLTERAVEMADVCLFLIDARTGVTPTDEVFADILRKKSAYVILGANKAE 122

Query: 331 -------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                  L   Y         +S+  GEG+ +L+  ++ +      +   + P
Sbjct: 123 GRAGEGGLLEAYALGLGEPIGLSAEHGEGMADLLEALRPVAREHAGRAEEAAP 175



 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 33/189 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N +  ++  +     G TRD +++ L+ EG  V++ DTAG+R+
Sbjct: 200 LQVAVVGRPNAGKSTLINRILGEERLLTGPEAGITRDSISLTLEWEGTPVRLFDTAGMRK 259

Query: 280 T---DDIVEKEGIKRTFLEVENA----------------DLILL-LKEINSKKEISFPKN 319
                D +EK  +      V  A                DL +  L E   +  +     
Sbjct: 260 RAKVQDKLEKLSVADGLRAVRFAEVVVVLLDVEIPFEQQDLRIADLAEREGRAVVIAVNK 319

Query: 320 IDFIFIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKK 368
            D    G K D       E++             +S+ TG GL+ L   I        ++
Sbjct: 320 WDLE--GEKQDKLRELRAEFERLLPQLRGAPLVTVSARTGRGLDRLHAAILRAHETWNRR 377

Query: 369 LPFSIPSHK 377
           +P +  +  
Sbjct: 378 VPTAALNRW 386


>gi|317122971|ref|YP_004102974.1| GTP-binding protein Era [Thermaerobacter marianensis DSM 12885]
 gi|315592951|gb|ADU52247.1| GTP-binding protein Era [Thermaerobacter marianensis DSM 12885]
          Length = 391

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 82/201 (40%), Gaps = 23/201 (11%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
               E  R+G+ + ++G  N GKS+L N L  + +AI++D P TTR  +   L+  G  +
Sbjct: 92  AGQPEGFRSGF-VALIGRPNVGKSTLLNQLIGRKIAIMSDKPQTTRTRILGVLNRPGAQL 150

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNI 320
              DT GI +   ++ +  ++     ++  +++  L E   ++         E       
Sbjct: 151 IFVDTPGIHKPQHLLGEHMVRVARRTLQEVEVVCWLVEAPDREPGPGDRYIAEQLVEVKT 210

Query: 321 DFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSILSNKFK 367
             I +  K D  +                    H +S+  G G+ EL+ +++  L    +
Sbjct: 211 PKILVVNKIDQVAPGEVPAIAQRFAQLGQFAAVHPVSALHGVGVPELVEELEGRLPQGPR 270

Query: 368 KLPFSIPSHKRHLYHLSQTVR 388
             P  + + +     +++ +R
Sbjct: 271 FFPEDMITDQPEAQIMAELIR 291


>gi|205373827|ref|ZP_03226629.1| GTP-binding protein EngA [Bacillus coahuilensis m4-4]
          Length = 262

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + ++IV D+PG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSGEWLNHEFNIIDTGGIEIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +   ++  ++  + ++ AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLEQIRQQAEIAIDEADVIIFMTNGREGVTAADEQVAKILYKTKKPVVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK 368
                YD           IS   G GL +L++           +
Sbjct: 126 MRELTYDFYSLGFGEPFPISGSHGIGLGDLLDAAAEHFPKGQDR 169



 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 15/162 (9%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
           NG+  +  A+     I  +T+    L++  +         +  +      ++    L F 
Sbjct: 91  NGREGVTAADEQVAKILYKTKKPVVLAVNKVDNP------EMRE-----LTYDFYSLGFG 139

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E        S      +  L +  + H  +G+  +      K  ++G  N GKSSL NA+
Sbjct: 140 E----PFPISGSHGIGLGDLLDAAAEHFPKGQDRDYGDEVIKFSLIGRPNVGKSSLVNAI 195

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
             +D  IV+DI GTTRD +       G    I DTAGIR+  
Sbjct: 196 LGEDRVIVSDIEGTTRDAIDSIFTFNGSPYVIIDTAGIRKEG 237


>gi|187918374|ref|YP_001883937.1| GTP-binding protein EngA [Borrelia hermsii DAH]
 gi|119861222|gb|AAX17017.1| GTP-binding protein [Borrelia hermsii DAH]
          Length = 438

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 17/212 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +   S ++  +  +       + ++    L F +   V     K + +  +FLKN +   
Sbjct: 112 LRKYSDKIVLVLNKIDSNHKEVLTYEFQKLGFKKSFLVSATHGKGINSLRIFLKNSVGKL 171

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            S+           KI I+G  N+GKS+L N LA  +V+IV+ I GTTRD +       G
Sbjct: 172 ASEDNT------DVKIGIIGKPNSGKSTLINFLAGDEVSIVSPIAGTTRDFIKARFQRNG 225

Query: 267 YLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPK----- 318
            + ++ DTAGIR    +    E   + R    ++  D++ LL ++  +      K     
Sbjct: 226 KIFELIDTAGIRRRARVNELVEHYSVSRALRVIDMVDIVFLLVDVKEELTAQDKKIAHYA 285

Query: 319 ---NIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
                  I + TK DL  + +  ++ L S   
Sbjct: 286 TKRGKGIIIVFTKWDLVDSKSGYFEALKSRVK 317



 Score = 62.2 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 74/174 (42%), Gaps = 16/174 (9%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++N   ++I G  N GKS+LFN L   + +I  ++ G TRD++     ++ Y   + D  
Sbjct: 6   VQNYKSVLIAGRPNVGKSTLFNKLLSSNRSITDEVYGVTRDLVKEVCTVDSYKFYLIDAG 65

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--KKEISFPKN-----IDFIFIGTK 328
           G     D + +  + +    +++ DLILL+ ++N    ++    +         + +  K
Sbjct: 66  GFTLLRDELSRIVVNKVISLLDSIDLILLVLDVNEMLLEDYELIEKLRKYSDKIVLVLNK 125

Query: 329 SDL---------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            D          +     +   L+S+  G+G+  L   +K+ +     +    +
Sbjct: 126 IDSNHKEVLTYEFQKLGFKKSFLVSATHGKGINSLRIFLKNSVGKLASEDNTDV 179


>gi|297380037|gb|ADI34924.1| GTP-binding protein EngA [Helicobacter pylori v225d]
          Length = 461

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 25/181 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR 
Sbjct: 200 IQVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRH 259

Query: 280 TDDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKS 329
              I  +EK  ++RT   +E + ++LL+ ++++      ++IS   +      I I  K 
Sbjct: 260 RGKILGIEKYALERTQKALEKSHIVLLVLDVSAPFVELDEKISSLADKHSLGIILILNKW 319

Query: 330 DLYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D+     EE                    S      ++E+ +KI  +     K++P S+ 
Sbjct: 320 DIRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSLL 379

Query: 375 S 375
           +
Sbjct: 380 N 380



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 28/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L++ 
Sbjct: 128 DKEKERAYAFSSF-----------------GMPKSFNISVSHNRGISALIDAILSALDLN 170

Query: 394 SLNEKDCGLDII 405
            + E+D   DI+
Sbjct: 171 QIIEQDLDADIL 182


>gi|290961544|ref|YP_003492726.1| GTPase [Streptomyces scabiei 87.22]
 gi|260651070|emb|CBG74191.1| putative GTPase [Streptomyces scabiei 87.22]
          Length = 488

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 87/227 (38%), Gaps = 23/227 (10%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +  E  D +     E+  +  F   D+   I +   G +      + ++G  N GKS+L 
Sbjct: 10  EHGELGDAEYAQFMELAAEEGFDVEDVEGAIEEAGHGPL----PVLAVVGRPNVGKSTLV 65

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N +  +  A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +
Sbjct: 66  NRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDVLGIDASVAAQAEYAI 125

Query: 297 ENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD----------LYSTYTEE 338
           E AD ++ + +          +   +    N   +    K D          L+S    E
Sbjct: 126 EAADAVVFVVDAKVGVTDTDEAVVRLLRKANKPVVLCANKVDGPSGEADATALWSLGIGE 185

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             H +SS  G G  ++++ +   L    ++   +     R +  + +
Sbjct: 186 -PHPVSSLHGRGTGDMLDAVLEALPEAPEQSFGTAVGGPRRIALIGR 231



 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 106/282 (37%), Gaps = 33/282 (11%)

Query: 123 IDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
             +  A+++  ++ ++     T+      +   +  +     +         +     L 
Sbjct: 123 YAIEAADAVVFVVDAKVGVTDTDEAVVRLLRKANKPVVLCANKVDGPSGEADATALWSLG 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             E   V +   +   + +  +   +     Q   G  +    +I ++G  N GKSSL N
Sbjct: 183 IGEPHPVSSLHGRGTGDMLDAVLEALPEAPEQS-FGTAVGGPRRIALIGRPNVGKSSLLN 241

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFL 294
            +A ++  +V +I GTTRD +   ++L G   K  DTAGIR+   + +        RT  
Sbjct: 242 KVANEERVVVNEIAGTTRDPVDELIELGGVTWKFVDTAGIRKRVHLQQGADYYASLRTAA 301

Query: 295 EVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSD---------LYSTYTE 337
            VE A++ ++L + +    +        +       +    K D         L      
Sbjct: 302 AVEKAEVAVILIDASESISVQDQRIVTMAVEAGRALVVAYNKWDTLDEERRYYLEREIET 361

Query: 338 EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           E+          +S+ TG  +E+L+  I++ L+    ++P  
Sbjct: 362 EFAQIAWAPRVNVSARTGRHMEKLVPAIETALAGWETRVPTG 403


>gi|257439162|ref|ZP_05614917.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii
           A2-165]
 gi|257198413|gb|EEU96697.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii
           A2-165]
          Length = 447

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + +AIV D PG TRD +  + +  G+   + DT GI  + 
Sbjct: 6   VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWSGHEFMLVDTGGIEPKA 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEISFP---KNIDFIFIGTKSD-- 330
            + +     ++  + ++ AD I+++ ++      + +E++      +   I    K D  
Sbjct: 66  TEGILAHMREQAEIAIDTADCIIMVVDVRDGLTAADEEVAHMLRRSHKPIILAVNKCDKT 125

Query: 331 ------LYSTYTEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 LY  Y   +D    ISS  G G  +L++ + + L      +   
Sbjct: 126 GEAPMELYEFYNLGFDEVLPISSVHGHGTGDLLDAVCAHLDFSETVVEED 175



 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 84/208 (40%), Gaps = 31/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +H+   +   +  +   + I+G  N GKSSL N +  ++  IV +  GTTRD 
Sbjct: 156 DLLDAVCAHLDFSET-VVEEDRIPVAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +   +D        +DTAG+R+     D +E+  + R    VE + + L+L +       
Sbjct: 215 IDTPVDNAYGKFIFTDTAGLRKRSNISDGLERYMVVRALAAVERSRVALILVDATVGFTE 274

Query: 309 --NSKKEISFPKNIDFIFIGTK-------------------SDLYSTYTEEYDHLISSFT 347
             +     +  +    I +  K                   +D +S         IS+ T
Sbjct: 275 QDSKVAGYAHEQGKACIIVVNKWDAVEGKETNTMEHQRRDYADCFSFMGYAPIIFISAQT 334

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPS 375
           G  + +L+  I+ + +    ++P  + +
Sbjct: 335 GYNVNKLMQLIRDVDAQNGARVPTGVLN 362


>gi|89901081|ref|YP_523552.1| GTP-binding protein EngA [Rhodoferax ferrireducens T118]
 gi|122479081|sp|Q21W32|DER_RHOFD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|89345818|gb|ABD70021.1| Small GTP-binding protein domain [Rhodoferax ferrireducens T118]
          Length = 447

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 34/213 (15%)

Query: 206 HISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           H+      +  R     K+ + G  N GKS+L N    ++  +  D+PGTTRD +++  +
Sbjct: 164 HLEDQDDADEQREPGIIKLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFE 223

Query: 264 LEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS 315
             G   ++ DTAG+R      + +EK  + +T   +E+++++LLL +      +    I+
Sbjct: 224 RNGQKFELVDTAGLRRRGKVFEAIEKFSVVKTLQAIESSNVVLLLIDATQGVTDQDAHIA 283

Query: 316 ---FPKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELIN 356
                     +    K D    Y  E                  HLIS+   +GL  L  
Sbjct: 284 GYILENGRAVVIAVNKWDAVDEYQRELVKRSIETRLPFLKFATMHLISATKRQGLGPLWA 343

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
            I         K+   I +       L + V++
Sbjct: 344 SIAQAYKAANCKMSTPILTR-----LLLEAVQF 371



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 26/216 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L K   AIV D  G TRD    +     +   + DT G   + 
Sbjct: 5   VALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNAKQGKHEFIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD-- 330
              + KE  K+T   V  AD+++ + +     S ++    K         +    K++  
Sbjct: 65  AGGIFKEMAKQTTQAVAEADVVIFVVDAREGISAQDHEIAKYLRRLGKPCVLAANKAEGM 124

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           L      E+        H IS+  G+G+  L++   ++     +    +    +  +  L
Sbjct: 125 LAGAQLVEFFELGLGEVHAISAAHGQGIRTLVD--LALAPLHLEDQDDADEQREPGIIKL 182

Query: 384 SQTVR-YLEMASLNEKDCGLD-IIAENL----RLAS 413
           +   R  +  ++L     G + ++A +L    R A 
Sbjct: 183 AVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAI 218


>gi|266624277|ref|ZP_06117212.1| GTP-binding protein EngA [Clostridium hathewayi DSM 13479]
 gi|288863885|gb|EFC96183.1| GTP-binding protein EngA [Clostridium hathewayi DSM 13479]
          Length = 189

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 19/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LA   ++IV D PG TRD +  D         + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLFNVLAGDTISIVKDTPGVTRDRIYADCTWLDKNFTLIDTGGIEPDS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + +  AD+I+ + ++            ++        +    K D +
Sbjct: 66  SDIILSQMREQAEIAIATADVIVFIVDVRQGLVDADSKVADMLRKSKKPVVLAVNKVDSF 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             +  +              +S+ +  GL EL++++         + 
Sbjct: 126 EKFGNDVYEFYNLGIGDPVPVSAASRLGLGELLDEVIKYFGEGTGEE 172


>gi|261856783|ref|YP_003264066.1| ribosome-associated GTPase EngA [Halothiobacillus neapolitanus c2]
 gi|261837252|gb|ACX97019.1| ribosome-associated GTPase EngA [Halothiobacillus neapolitanus c2]
          Length = 567

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 80/193 (41%), Gaps = 27/193 (13%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  E      ++ ++G  N GKS+L N L  +D  +  D PGTTRD + I  +  G    
Sbjct: 171 EEPEYDEKTIRVALIGRPNVGKSTLTNRLLGEDRVLAFDQPGTTRDSIYIPFEQNGKAYT 230

Query: 271 ISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KN 319
           + DTAG+R     ++++EK  I +T   +E A++++L+ + +   S+++         + 
Sbjct: 231 LIDTAGVRRRARVNEMIEKFSIVKTLQAIEAANVVILVCDAHEGISEQDQHLLGFIHDRG 290

Query: 320 IDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILS 363
              +    K D  + Y                     H IS+  G G+  L   +     
Sbjct: 291 RALVIAINKWDNLTDYARAEVKRQIDLRLDFINYAEMHFISALHGTGVGHLFESVDKAYL 350

Query: 364 NKFKKLPFSIPSH 376
              + +  ++ + 
Sbjct: 351 AAMRDISTNVLTR 363



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + +   A+V D  G TRD      + EG    + DT G+    
Sbjct: 5   IALVGRPNVGKSTLFNQMTRSRAALVADYAGLTRDRQYGSAEHEGRDFIVIDTGGLTGER 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSD 330
             +E     + +  +E AD ++ + +       + +EI+      +     +  K D
Sbjct: 65  GGIEALMQDQAWAAIEEADCVVFMVDARAGLTVADQEIAEKLRRSSKPIQLVVNKVD 121


>gi|116626742|ref|YP_828898.1| GTP-binding protein Era [Candidatus Solibacter usitatus Ellin6076]
 gi|116229904|gb|ABJ88613.1| GTP-binding protein Era [Candidatus Solibacter usitatus Ellin6076]
          Length = 304

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 23/194 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L NAL  + VAIV D P TTR  +   L L    +  +DT G
Sbjct: 6   RSGF-VSLIGRPNAGKSTLLNALVGQKVAIVADKPQTTRTSIQGVLTLPEAQIVFADTPG 64

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
           I + D  + K  +      +E  DL+L + +   K         +I+       + +  K
Sbjct: 65  IHKADTPLNKRLMDTVRGALEERDLLLFVADATRKFNEDDRRAIDIARRHKTPVVLVLNK 124

Query: 329 SDLYST------YTEEYD--------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            DL           EEY           +SS    GL++L   I   L       P    
Sbjct: 125 IDLLKDKAHLLPLIEEYKAVFEFTEYVPVSSVKKIGLDQLRAVILKYLPVGPAYFPEDYV 184

Query: 375 SHKRHLYHLSQTVR 388
           + +   +  ++ +R
Sbjct: 185 TDQPERFLAAELIR 198


>gi|56551349|ref|YP_162188.1| GTP-binding protein EngA [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542923|gb|AAV89077.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 454

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 18/198 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD    D +L G   ++ DTAG  + D
Sbjct: 4   VAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDAELIGMPFRVIDTAGFEDED 63

Query: 282 DIVE-KEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD-- 330
                     +T   V+  D+ L + +         +EI+          I +  K +  
Sbjct: 64  PASLPGRMRVQTEAAVKECDVALFVIDARQGITPLDEEIARWLRALGKPIIVLANKCEGK 123

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                L   Y+  +      S+  GEGL  L   ++  +     +   S           
Sbjct: 124 GGESGLLEAYSLGFGEPLPFSAEHGEGLVGLFQALRPFVEGDALEEDTSSEDEDEEKSEE 183

Query: 384 SQTVRYLEMASLNEKDCG 401
              +  L++A +   + G
Sbjct: 184 EIDLSPLQLAIVGRPNAG 201



 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  ++ I+G  NAGKS+L N L   D  I     G TRD + ID   +G  V++ DTAG+
Sbjct: 188 SPLQLAIVGRPNAGKSTLINRLIGVDRMITGPEAGITRDSIAIDWSWQGRPVRLIDTAGL 247

Query: 278 RETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334
           R+     D +E+  +  TF  ++ A++++LL +     E    +  D +    +S + + 
Sbjct: 248 RKKARVVDKMERLSVMDTFRTIDYAEVVVLLLDGTQGLEGQDLRIADRVLEEGRSLIIAI 307

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSI 361
              +     S+F     E L + +  +
Sbjct: 308 NKWDMVENPSAFLQAIREGLNDGLAQV 334


>gi|304440203|ref|ZP_07400093.1| ribosome-associated GTPase EngA [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371252|gb|EFM24868.1| ribosome-associated GTPase EngA [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 442

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 11/147 (7%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              +      ++ ++G  N GKSSL N +  ++ +IVTDIPGTTRD +      +   + 
Sbjct: 171 DTSDEYDETVRVTLIGKPNVGKSSLINFILGEERSIVTDIPGTTRDSIDSHFIYKDTELT 230

Query: 271 ISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKN 319
           + DTAG+R+   I    E+  + RT   +E +++ +LL +               +   N
Sbjct: 231 LVDTAGLRKKKKINEAVERYSVIRTLTAIERSNVCILLIDAEEGVSEQDSKIVGYAHDNN 290

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSF 346
              +    K D  +   +       S 
Sbjct: 291 KAIVVAVNKWDAVTKDNDSIKKYEKSI 317



 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 12/153 (7%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E+I     + I+G  N GKS+LFN +  + ++I  D PG TRD +  D   +G    + D
Sbjct: 2   EVIMEKPIVSIIGKPNVGKSTLFNKIVGRKISITEDTPGVTRDRIYSDASWQGRKFLLVD 61

Query: 274 TAGIRETDDIVEKEGIK-RTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIF 324
           T G+   D+ +    IK +  L +E +D+I+ + +     S  ++   K     N   I 
Sbjct: 62  TGGLDLKDEDIFMSSIKGQADLALETSDVIIFVLDGIHGLSPTDVDIAKYLRRSNKKIIL 121

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
              K D  S     YD       G G+  LI+ 
Sbjct: 122 CINKYDSKSAKDNYYDFFEL---GLGIPVLISA 151


>gi|225021514|ref|ZP_03710706.1| hypothetical protein CORMATOL_01535 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945896|gb|EEG27105.1| hypothetical protein CORMATOL_01535 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 484

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 27/214 (12%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D    S++        L   + S   Q +   I     ++ ++G  N GKSSL N +A +
Sbjct: 187 DPWPVSAQHGRGGADVLDEILRSFPDQPRQPSITEGPRRVALVGKPNVGKSSLLNKIAGE 246

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENA 299
           + ++V D+ GTT D +   + L+G+L K  DTAG+R+        E     RT   ++ A
Sbjct: 247 ERSVVDDVAGTTVDPVDSLVQLDGHLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAA 306

Query: 300 DLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST---YTEEYDH------- 341
           ++ L + + +            +        + +  K DL +    +  E D        
Sbjct: 307 EVCLFMIDSSEPVSEQDQRVLSMILDAGKALVLVFNKWDLMTEDRRWELERDIEQQLAHI 366

Query: 342 ------LISSFTGEGLEELINKIKSILSNKFKKL 369
                  IS+ TG  L++L   ++  L N  K++
Sbjct: 367 PWVRRVNISAKTGRALQKLEPYMEEALENWDKRI 400



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 20/205 (9%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +F      +D   L+ +         L E +     + I+G  N GKS+L N    +  
Sbjct: 19  PHFGEDFSESDWEQLEKEFGFERETPHLEENLC---TVAIVGRPNVGKSTLVNRFLGRRE 75

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+V D PG TRD ++   D  G    + DT G       +     ++    +E AD+I++
Sbjct: 76  AVVEDFPGVTRDRISYIADWGGQRFWVQDTGGWDPNVKGIHGAIARQAETAMETADVIVM 135

Query: 305 LKEIN---SKKEISFPKN-----IDFIFIGTKSDLYSTYTEEYDHL---------ISSFT 347
           + +     ++ +    +      +  I +  K D    Y +  +           +S+  
Sbjct: 136 VVDTKVGITETDAVMARKLHGASVPVILVANKFDSDMQYADMAEFYALGLGDPWPVSAQH 195

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
           G G  +++++I     ++ ++   +
Sbjct: 196 GRGGADVLDEILRSFPDQPRQPSIT 220


>gi|120601244|ref|YP_965644.1| GTP-binding protein EngA [Desulfovibrio vulgaris DP4]
 gi|166198712|sp|A1V9V1|DER_DESVV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|120561473|gb|ABM27217.1| small GTP-binding protein [Desulfovibrio vulgaris DP4]
          Length = 495

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ +LG  NAGKSSL NAL   +  IV+D+ GTTRD + +  + +G      DTAG+R 
Sbjct: 231 LRLCMLGRPNAGKSSLVNALTGTNRMIVSDVAGTTRDSVDVAFEKDGLSYTFVDTAGVRR 290

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISF--PKNIDFIFIGTK 328
                D VE+  +  +      A + LL+ +         K+ I     +   F+ +  K
Sbjct: 291 RSRITDTVERYSVNSSLKSTTKAHVTLLVLDAVEGITSQDKRLIELLDERKTPFMVLVNK 350

Query: 329 SDLYSTYTEE 338
            DL      E
Sbjct: 351 MDLVPAKARE 360



 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 29/174 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRE 279
           KI ++G  N GKS+LFN L + + AI  D+PG TRD +   +         I DT GI  
Sbjct: 4   KIALVGRPNVGKSTLFNRLIRSNRAITHDMPGVTRDRMEGIVRGRNKRPFGIIDTGGITL 63

Query: 280 TDDI-----------VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNI 320
                           E E +++    +     + L+ +                     
Sbjct: 64  DGHAAVAEGPAGIRGFEAEILRQAEEAIAECVAVCLVVDGREGLLPFDEHLASYLRRTGK 123

Query: 321 DFIFIGTKSDLYST---YTEEYDH------LISSFTGEGLEELINKIKSILSNK 365
             + +  K D        T E+         +S+  G  L  L ++++ +L  +
Sbjct: 124 PVLVVVNKVDGIEKEDVLTAEFHILGFPVLAVSAEHGHNLRWLESEMRDLLPEE 177


>gi|305681382|ref|ZP_07404189.1| ribosome-associated GTPase EngA [Corynebacterium matruchotii ATCC
           14266]
 gi|305659587|gb|EFM49087.1| ribosome-associated GTPase EngA [Corynebacterium matruchotii ATCC
           14266]
          Length = 484

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 27/214 (12%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D    S++        L   + S   Q +   I     ++ ++G  N GKSSL N +A +
Sbjct: 187 DPWPVSAQHGRGGADVLDEILRSFPDQPRQPSITEGPRRVALVGKPNVGKSSLLNKIAGE 246

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENA 299
           + ++V D+ GTT D +   + L+G+L K  DTAG+R+        E     RT   ++ A
Sbjct: 247 ERSVVDDVAGTTVDPVDSLVQLDGHLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAA 306

Query: 300 DLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST---YTEEYDH------- 341
           ++ L + + +            +        + +  K DL +    +  E D        
Sbjct: 307 EVCLFMIDSSEPVSEQDQRVLSMILDAGKALVLVFNKWDLMTEDRRWELERDIEQQLAHI 366

Query: 342 ------LISSFTGEGLEELINKIKSILSNKFKKL 369
                  IS+ TG  L++L   ++  L N  K++
Sbjct: 367 PWVRRVNISAKTGRALQKLEPYMEEALENWDKRI 400



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 84/213 (39%), Gaps = 21/213 (9%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D SE  D  +F      +D   L+ +         L E +     + I+G  N GKS+L 
Sbjct: 12  DESEFLD-PHFGEDFSESDWEQLEKEFGFERETPHLEENLC---TVTIVGRPNVGKSTLV 67

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N    +  A+V D PG TRD ++   D  G    + DT G       +     ++    +
Sbjct: 68  NRFLGRREAVVEDFPGVTRDRISYIADWGGQRFWVQDTGGWDPNVKGIHGAIARQAETAM 127

Query: 297 ENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKSDLYSTYTEEYDHL------ 342
           E AD+I+++ +     ++ +    +      +  I +  K D    Y +  +        
Sbjct: 128 ETADVIVMVVDTKVGITETDAVMARKLHGASVPVILVANKFDSDMQYADMAEFYALGLGD 187

Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              +S+  G G  +++++I     ++ ++   +
Sbjct: 188 PWPVSAQHGRGGADVLDEILRSFPDQPRQPSIT 220


>gi|217034119|ref|ZP_03439539.1| hypothetical protein HP9810_868g12 [Helicobacter pylori 98-10]
 gi|216943403|gb|EEC22859.1| hypothetical protein HP9810_868g12 [Helicobacter pylori 98-10]
          Length = 461

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 25/180 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKSD 330
             I  +EK  ++RT   +E + ++LL+ ++++      ++IS   +      I I  K D
Sbjct: 261 GKILGIEKYALERTQKALEKSHIVLLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +     EE                    S      ++E+ +KI  +     K++P S+ +
Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITASCLKMRHIDEIKHKIIEVYECFSKRIPTSLLN 380



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 129

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 130 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALN 168


>gi|301164626|emb|CBW24185.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 391

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  ++ A+V+DI GTT D +   +++ G       DTAG
Sbjct: 8   NRLHIALFGKRNSGKSSLINALTNQNAALVSDIAGTTTDPVYQPMEIHGIGPCVFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKK---EISFPKNIDFIFIGTKSD 330
             +  ++     I+RT    + AD+ L++    E++ ++   E+   +NI ++ +  K+D
Sbjct: 68  FDDEGELGSLR-IERTLQAADKADIALMVCCDTELSEEQRWIELLKERNIPYLLVLNKAD 126

Query: 331 LYSTYTE----------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L     E          ++  ++S+    G++ +   I   L    ++    
Sbjct: 127 LLEKPDEVADKLEQQTGQHPLIVSAKEKTGIDSIRQSILHRLPELNEQPDIV 178


>gi|165933610|ref|YP_001650399.1| GTP-binding protein Der [Rickettsia rickettsii str. Iowa]
 gi|189037156|sp|B0BUT3|DER_RICRO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|165908697|gb|ABY72993.1| GTP-binding protein [Rickettsia rickettsii str. Iowa]
          Length = 447

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDEHP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSDLYS 333
           + + +  I++T   +  ADLI  + +       + K   SF +  N   I +  K +   
Sbjct: 66  NSMGERLIEQTTKAILEADLICFMVDARSGILPDDKLLSSFVRKYNKPAILVVNKCEKAF 125

Query: 334 TYTEEY-------DHLISSFTGEGLEELINKIKSILSNK 365
            + +EY          IS+  G GL +L ++I + L  +
Sbjct: 126 DFDKEYYKLGFDSMIAISAEHGTGLIDLYDEIIAKLPEE 164



 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 113/303 (37%), Gaps = 44/303 (14%)

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSET-----EMQRRLSMEGMSGELSSLYGQWIDK 164
           P     R  E     +LEA+ +  ++ + +     +      +   +     +  +    
Sbjct: 65  PNSMGERLIEQTTKAILEADLICFMVDARSGILPDDKLLSSFVRKYNKPAILVVNKCEKA 124

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK----NDISSHISQGKLGEIIRNGY 220
               + + +   D       ++ +    L D +  K      I ++I+    G+ ++   
Sbjct: 125 FDFDKEYYKLGFDSMIAISAEHGTGLIDLYDEIIAKLPEEESIETNIADPIKGDCLQ--- 181

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K+ DTAG+R+ 
Sbjct: 182 -IVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240

Query: 281 D---DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFP-----KNIDFIFIGTKS 329
               + +EK     T   ++ A+ ++L+ +  +    ++++       +    + +  K 
Sbjct: 241 STITESLEKLSASDTINSIKLANTVILMIDALAPLKQQDLNIASHVVNEGRSIVIVVNKW 300

Query: 330 DLYSTYTEEYDH--------------------LISSFTGEGLEELINKIKSILSNKFKKL 369
           DL     +E                        IS+   + +E++++    I     KK+
Sbjct: 301 DLVKESEKEAFQEEFYYQINTHLPQVKGIPVLFISAINKQNIEQVLDACLKIYKIWNKKI 360

Query: 370 PFS 372
             S
Sbjct: 361 TTS 363


>gi|241761000|ref|ZP_04759089.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374619|gb|EER64080.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 454

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 18/198 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD    D +L G   ++ DTAG  + D
Sbjct: 4   VAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDAELIGMPFRVIDTAGFEDED 63

Query: 282 DIVE-KEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD-- 330
                     +T   V+  D+ L + +         +EI+          I +  K +  
Sbjct: 64  PASLPGRMRVQTEAAVKECDVALFVIDARQGITPLDEEIARWLRALGKPIIVLANKCEGK 123

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                L   Y+  +      S+  GEGL  L   ++  +     +   S           
Sbjct: 124 GGESGLLEAYSLGFGEPLPFSAEHGEGLVGLFQALRPFVEGYSLEEDTSSEDEDEEKSEE 183

Query: 384 SQTVRYLEMASLNEKDCG 401
              +  L++A +   + G
Sbjct: 184 EIDLSPLQLAIVGRPNAG 201



 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  ++ I+G  NAGKS+L N L   D  I     G TRD + ID   +G  V++ DTAG+
Sbjct: 188 SPLQLAIVGRPNAGKSTLINRLIGVDRMITGPEAGITRDSIAIDWSWQGRPVRLIDTAGL 247

Query: 278 RETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334
           R+     D +E+  +  TF  ++ A++++LL +     E    +  D +    +S + + 
Sbjct: 248 RKKARVVDKMERLSVMDTFRTIDYAEVVVLLLDGTQGLEGQDLRIADRVLEEGRSLIIAI 307

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSI 361
              +     S+F     E L + +  +
Sbjct: 308 NKWDMVENPSAFLQAIREGLNDGLAQV 334


>gi|15611840|ref|NP_223491.1| GTP-binding protein EngA [Helicobacter pylori J99]
 gi|8134435|sp|Q9ZL09|DER_HELPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|4155327|gb|AAD06341.1| putative [Helicobacter pylori J99]
          Length = 462

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 39/222 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERSYAFSSF-----------------GTPKSFNISVSHNRGISALIDAVLNALNLN 170

Query: 394 SLNEKDCGLDIIAENLRLASVSLGK----------ITGCVDV 425
            + E+D   DI+ E+L   + +L +          I G V+V
Sbjct: 171 QIIEQDLDADIL-ESLETPNNALEETKEEEIIQVGIIGRVNV 211



 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 111/267 (41%), Gaps = 34/267 (12%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           + + I ++ E +R  +        S       ++   I + I+A L+      +      
Sbjct: 121 VINKIDNDKEKERSYAFSSFGTPKSFNISVSHNR--GISALIDAVLNALNLNQIIEQDLD 178

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             + + L   N   + + + K  EII+ G    I+G  N GKSSL NAL KK+ ++V+ +
Sbjct: 179 ADILESLETPN---NALEETKEEEIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSV 231

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEI 308
            GTT D +   + +    +   DTAGIR    I  +EK  + RT   +E + + LL+ ++
Sbjct: 232 AGTTIDPIDETILIGDQKICFVDTAGIRHRGKILGIEKYALDRTQKALEKSHIALLVLDV 291

Query: 309 NSK-----KEISFPKNID---FIFIGTKSDLYSTYTEEY---------------DHLISS 345
           ++      ++IS   +      I I  K D+     EE                    S 
Sbjct: 292 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSC 351

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS 372
                ++E+ +KI  +     K++P S
Sbjct: 352 LKARHIDEIKHKIIEVYECFSKRIPTS 378


>gi|298480725|ref|ZP_06998921.1| GTP-binding protein [Bacteroides sp. D22]
 gi|298273159|gb|EFI14724.1| GTP-binding protein [Bacteroides sp. D22]
          Length = 396

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D+A+V++ PGTT D+++  ++++G       DT G
Sbjct: 10  NRLHITLFGRRNSGKSSLINALTGQDIALVSNTPGTTTDLVSKAMEIQGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISF---PKNIDFIFIGTKSD 330
             +  ++ E   I RT   +E  D+ LLL E  +   +KEI      KNI  I +  K D
Sbjct: 70  FDDEGELGELR-ISRTLKAIEKTDIALLLCEDTTFFHEKEILALLKEKNIPVIPVLNKID 128

Query: 331 L------YSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +       +TY EE    +  LIS+    G+E +   I   L + F +   +
Sbjct: 129 IRENSDHLATYIEEQCKIHPLLISAKEKIGIELIRQAILEKLPSDFGQQSIT 180


>gi|227484953|ref|ZP_03915269.1| GTP-binding protein [Anaerococcus lactolyticus ATCC 51172]
 gi|227237108|gb|EEI87123.1| GTP-binding protein [Anaerococcus lactolyticus ATCC 51172]
          Length = 439

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 12/171 (7%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +S   D     S E    +  L + I S+I   +  E   +  +I I+G  NAGKSSL N
Sbjct: 135 YSFGFDNLVMISAEQAKGLGDLLDAIISYIDFSQF-EGNDDETRIAIIGKPNAGKSSLVN 193

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFL 294
            L  +D  IVTDI GTTRD +        +   + DTAG+R    +   +E    +RTF 
Sbjct: 194 LLLNEDRMIVTDIAGTTRDAVDSYWTYNDHNYVLIDTAGLRRKSKVKENIEYYANQRTFD 253

Query: 295 EVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTE 337
            V++A++ L L +     ++++              I    K DL    T 
Sbjct: 254 AVDSAEICLFLIDATVGVTEQDAKIAGYAHNNKKAIIIAVNKWDLVEKDTN 304



 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G +N GKS+LFN L  K  +I  D+ G TRD +    + +     + DT GI   +
Sbjct: 6   VTLVGRTNVGKSTLFNRLVGKRKSITEDVSGVTRDRIVDKAEWQNNEFLLVDTGGIDISS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTK---- 328
            D++  E   +    +   +LIL + +        ++         N   I +  K    
Sbjct: 66  KDMMNVEIRGQVEKALLETNLILFVVDGKEGVNPHDVDIANEIRKYNKPVIIVANKVDNM 125

Query: 329 ---SDLYSTYTEEYDH--LISSFTGEGLEELINKIKSIL 362
               DLY  Y+  +D+  +IS+   +GL +L++ I S +
Sbjct: 126 QVPDDLYDFYSFGFDNLVMISAEQAKGLGDLLDAIISYI 164


>gi|46581596|ref|YP_012404.1| GTP-binding protein EngA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81698970|sp|Q725L9|DER_DESVH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|46451019|gb|AAS97664.1| GTP-binding protein EngA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311235239|gb|ADP88093.1| ribosome-associated GTPase EngA [Desulfovibrio vulgaris RCH1]
          Length = 491

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ +LG  NAGKSSL NAL   +  IV+D+ GTTRD + +  + +G      DTAG+R 
Sbjct: 227 LRLCMLGRPNAGKSSLVNALTGTNRMIVSDVAGTTRDSVDVAFEKDGLSYTFVDTAGVRR 286

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISF--PKNIDFIFIGTK 328
                D VE+  +  +      A + LL+ +         K+ I     +   F+ +  K
Sbjct: 287 RSRITDTVERYSVNSSLKSTTKAHVTLLVLDAVEGITSQDKRLIELLDERKTPFMVLVNK 346

Query: 329 SDLYSTYTEE 338
            DL      E
Sbjct: 347 MDLVPAKARE 356



 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 29/172 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRE 279
           KI ++G  N GKS+LFN L + + AI  D+PG TRD +   +         I DT GI  
Sbjct: 4   KIALVGRPNVGKSTLFNRLIRSNRAITHDMPGVTRDRMEGIVRGRNKRPFGIIDTGGITL 63

Query: 280 TDDI-----------VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNI 320
                           E E +++    +     + L+ +                     
Sbjct: 64  DGHAAVAEGPAGIRGFEAEILRQAEEAIAECVAVCLVVDGREGLLPFDEHLASYLRRTGK 123

Query: 321 DFIFIGTKSDLYST---YTEEYDH------LISSFTGEGLEELINKIKSILS 363
             + +  K D        T E+         +S+  G  L  L ++++ +L 
Sbjct: 124 PVLVVVNKVDGIEKEDVLTAEFHILGFPVLAVSAEHGHNLRWLESEMRDLLP 175


>gi|298528797|ref|ZP_07016201.1| ribosome-associated GTPase EngA [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298512449|gb|EFI36351.1| ribosome-associated GTPase EngA [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 442

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 108/307 (35%), Gaps = 28/307 (9%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLIS-SETEMQRRLSMEGMSGELSS 156
            L     L L    +     +E  +  +  A+ +  ++  S         +  M  +   
Sbjct: 60  TLVDTGGLVLEQGAQLEEEIYEQVREAMHSADLILFMVDGSAGVTALDEQLAAMLRQSRR 119

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
                ++K+         + DF       N  S     ++  L+  I S +   +  E  
Sbjct: 120 PVRLVVNKVDGEERAALVEGDFYSLGFDMNMVSAAHGYNMPVLQEAIESSLPAHEEPEDQ 179

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
               ++ +LG  N GKSSL N L  ++  +V+   GTTRD + + L+         DTAG
Sbjct: 180 AAHLRLSLLGRPNVGKSSLVNTLLGQERVLVSSRAGTTRDCVDVILEKGDKRYVFIDTAG 239

Query: 277 IRET---DDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFP--KNIDFIFI 325
           +R      D +E+    R     + +D+ LL+ +         KK +SF   + I  + +
Sbjct: 240 VRRKTTISDDLERFSALRAIRSCQRSDVALLVLDALSGMVAQDKKLLSFLEREKIPLVIV 299

Query: 326 GTKSD---------LYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKL 369
             K D         L   + +E            S  T  GL  LI   + +L     ++
Sbjct: 300 VNKVDQIPRKDLGKLKRYFQDELAFCAHAPVIYTSCITRAGLGGLIPLAEKVLGQSRVRV 359

Query: 370 PFSIPSH 376
                + 
Sbjct: 360 GTGELNR 366



 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 18/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           +VI+G  N GKS+LFN L +++ A+V D PG TRD L   +        + DT G+  E 
Sbjct: 12  VVIVGRPNVGKSTLFNRLLRQNKAMVHDRPGVTRDSLYGRVQGRTRDYTLVDTGGLVLEQ 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
              +E+E  ++    + +ADLIL + + ++           +          +  K D  
Sbjct: 72  GAQLEEEIYEQVREAMHSADLILFMVDGSAGVTALDEQLAAMLRQSRRPVRLVVNKVDGE 131

Query: 333 ST--------YTEEYD-HLISSFTGEGLEELINKIKSILSNKFKKLP 370
                     Y+  +D +++S+  G  +  L   I+S L    +   
Sbjct: 132 ERAALVEGDFYSLGFDMNMVSAAHGYNMPVLQEAIESSLPAHEEPED 178


>gi|168181631|ref|ZP_02616295.1| GTP-binding protein Era [Clostridium botulinum Bf]
 gi|237796398|ref|YP_002863950.1| GTP-binding protein Era [Clostridium botulinum Ba4 str. 657]
 gi|259645941|sp|C3L3F3|ERA_CLOB6 RecName: Full=GTPase Era
 gi|182675144|gb|EDT87105.1| GTP-binding protein Era [Clostridium botulinum Bf]
 gi|229262668|gb|ACQ53701.1| GTP-binding protein Era [Clostridium botulinum Ba4 str. 657]
          Length = 296

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 24/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NA+ K+ ++IV+  P TTR+ +   L  + Y +   DT GI +  
Sbjct: 7   VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             + +  +K     +++ DL+L L   + K         E      +    +  K D   
Sbjct: 67  HKLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKIDENP 126

Query: 331 ------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    TY+E    E    IS+  G+ ++ L   +   +    +  P  +   +   
Sbjct: 127 QEKVAETLKTYSELMEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIIDQNER 186

Query: 381 YHLSQTVRYLEMASLNE---KDCGLDIIA 406
           + +++ VR   +  L+E       ++I+ 
Sbjct: 187 FIVAEIVREKALRLLSEEVPHGIAVEILQ 215


>gi|255101596|ref|ZP_05330573.1| GTP-binding protein Era [Clostridium difficile QCD-63q42]
          Length = 297

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D P TTR+ +      E   +   DT GI +  
Sbjct: 7   VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDEEMQIVFLDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPK--NIDFIFIGTKSDLYS 333
           + + +  +K      +N DLIL + + +       +K I   +      I +  K D   
Sbjct: 67  NKLGEFMVKAATEAFKNVDLILFVVDDSKKIGPGDRKIIEDLRSVKTPIILVVNKIDQLD 126

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E +D                IS+  G+  + LI  I++ L    K  P  + + +  
Sbjct: 127 QKDELFDIIKMYDREGIFKEIVPISALKGKNTDTLIKVIQNYLEEGPKYFPDYMITDQPE 186

Query: 380 LYHLSQTVR 388
              +++ +R
Sbjct: 187 RVLIAELIR 195


>gi|109947730|ref|YP_664958.1| GTP-binding protein EngA [Helicobacter acinonychis str. Sheeba]
 gi|123362586|sp|Q17WL7|DER_HELAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|109714951|emb|CAJ99959.1| GTP-binding protein [Helicobacter acinonychis str. Sheeba]
          Length = 462

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 106/252 (42%), Gaps = 46/252 (18%)

Query: 149 GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHIS 208
             +  +S+L    +D L  +   IE DLD    E ++  ++ E  N+   +         
Sbjct: 151 SHNRGISALIDAILDALG-LTKIIEQDLDIDILESLETPNNTEDGNNEEEI--------- 200

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
                       ++ I+G  N GKSSL N L +K+ +IV+ + GTT D +   + ++   
Sbjct: 201 -----------IQVGIIGRVNVGKSSLLNVLTQKERSIVSSVAGTTIDPIDETILVKNQK 249

Query: 269 VKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID 321
           +   DTAGIR    I  +EK  ++RT   +E + + LL+ ++++      ++IS   +  
Sbjct: 250 ICFVDTAGIRHKGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKH 309

Query: 322 ---FIFIGTKSDLYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILS 363
               I I  K D+     EE                    S      +EE+ +KI  +  
Sbjct: 310 SLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSCLKTRHIEEIKHKIIEVYE 369

Query: 364 NKFKKLPFSIPS 375
              K++P S+ +
Sbjct: 370 CFSKRIPTSLLN 381



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 28/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLAKERIAITSDFVGTTRDINKRKITLNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
             + KE         + +DLIL + +   I S ++I   +     N +   +  K D  +
Sbjct: 70  AFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERSYAFSSF-----------------GMPKSFNISVSHNRGISALIDAILDALGLT 170

Query: 394 SLNEKDCGLDII 405
            + E+D  +DI+
Sbjct: 171 KIIEQDLDIDIL 182


>gi|37999702|sp|Q8G6A8|DER_BIFLO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|23325955|gb|AAN24555.1| probable GTP binding protein [Bifidobacterium longum NCC2705]
          Length = 463

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 30/243 (12%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
             +  D+ +   +     L   E   +     + V + +    + +         G +  
Sbjct: 141 VNKIDDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTS--GYLTP 198

Query: 218 NGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +G + + ++G  N GKSSL N LA+++ A+V D+ GTTRD +   ++++G      DTAG
Sbjct: 199 SGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAG 258

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFI 325
           I+         E     RT   +E  +L L+L + +        K            + +
Sbjct: 259 IKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLV 318

Query: 326 GTKSD---------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKL 369
             K D         L   +  E+D ++       S+ TG     L   +   L +  +++
Sbjct: 319 FNKWDAMDEFDKQRLERLWNTEFDRVMWAERVNLSAKTGWHTNRLTRAMDKALESWDQRI 378

Query: 370 PFS 372
           P  
Sbjct: 379 PTG 381



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 17/181 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 29  LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 88

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYS 333
           + +E     +  + V  AD ++ + +       + + I           +    K D  +
Sbjct: 89  EGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDDQA 148

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           +     +           IS+  G G+ +L++     L    K   +  PS  R +  + 
Sbjct: 149 SEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTSGYLTPSGLRRVALVG 208

Query: 385 Q 385
           +
Sbjct: 209 R 209


>gi|184201166|ref|YP_001855373.1| GTP-binding protein EngA [Kocuria rhizophila DC2201]
 gi|183581396|dbj|BAG29867.1| GTP-binding protein EngA [Kocuria rhizophila DC2201]
          Length = 499

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 98/240 (40%), Gaps = 23/240 (9%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK----I 222
              S   A +D +E E  +  + +E L D   L ++ ++ ++    GE  R+  +    +
Sbjct: 7   EDISERLAAIDDTEAE-ARAQALREGLADYE-LDDEDAALLADWIDGEEQRDARRPDPVV 64

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G  +   
Sbjct: 65  AVVGRPNVGKSTLVNRVIGRREAVVEDTPGVTRDRVSYKAEWNGKNFTLVDTGGWEQDAK 124

Query: 283 IVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYST 334
            + K    +  L V+NAD +LL+ +    + +  E    +        I +  K+D    
Sbjct: 125 GINKRVADQAELAVQNADAVLLVLDVTVGVTATDEGVVNMLRRVKKPIIVVANKADSPQL 184

Query: 335 YTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             E              +S+  G+G  + ++ + + L    +     +    R +  + +
Sbjct: 185 EIEATALWSLGMGEPFPVSALHGKGSGDALDALVNALPEFSEVAEAELEGGPRRVALIGR 244



 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 29/204 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L   +++     ++ E    G   ++ ++G  N GKSSL N LA  D  +V D  GTTR
Sbjct: 213 ALDALVNALPEFSEVAEAELEGGPRRVALIGRPNVGKSSLLNKLAGSDRVVVDDTAGTTR 272

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEIN--- 309
           D +   + L G   +  DTAGIR    + +        RT   +E A++ ++L  ++   
Sbjct: 273 DPVDEIVMLGGEPWRFIDTAGIRRRVHLQQGADFYASLRTQTALERAEVAVVLLAVDEVL 332

Query: 310 SKKEISFPK-----NIDFIFIGTKSD---------LYSTYTEEYDH-------LISSFTG 348
           S++++   +         +    K D         L      +  H        +S+ TG
Sbjct: 333 SEQDVRILQMAVDSGRALVLAFNKWDTLDDERRFYLEREIERDLAHVAWAPRVNMSAKTG 392

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
              ++L+  + + L +  +++P  
Sbjct: 393 WHKDKLVPALHTALDSWDRRIPTG 416


>gi|168179376|ref|ZP_02614040.1| GTP-binding protein Era [Clostridium botulinum NCTC 2916]
 gi|182669495|gb|EDT81471.1| GTP-binding protein Era [Clostridium botulinum NCTC 2916]
          Length = 296

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 86/209 (41%), Gaps = 24/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NA+ K+ ++IV+  P TTR+ +   L  + Y +   DT GI +  
Sbjct: 7   VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             + +  +K     +++ DL+L L   + K         E      +    +  K D   
Sbjct: 67  HKLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKIDENP 126

Query: 331 ---------LYSTYTE-EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     YS   E E    IS+  G+ ++ L   +   +    +  P  +   +   
Sbjct: 127 QEKVAETLKAYSELMEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIIDQNER 186

Query: 381 YHLSQTVRYLEMASLNE---KDCGLDIIA 406
           + +++ VR   +  L+E       ++I+ 
Sbjct: 187 FIVAEIVREKALRLLSEEVPHGIAVEILQ 215


>gi|170754569|ref|YP_001782578.1| GTP-binding protein Era [Clostridium botulinum B1 str. Okra]
 gi|226741200|sp|B1ILK9|ERA_CLOBK RecName: Full=GTPase Era
 gi|169119781|gb|ACA43617.1| GTP-binding protein Era [Clostridium botulinum B1 str. Okra]
 gi|322807262|emb|CBZ04836.1| GTP-binding protein Era [Clostridium botulinum H04402 065]
          Length = 296

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 24/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NA+ K+ ++IV+  P TTR+ +   L  + Y +   DT GI +  
Sbjct: 7   VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             + +  +K     +++ DL+L L   + K         E      +    +  K D   
Sbjct: 67  HKLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKIDENP 126

Query: 331 ------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    TY+E    E    IS+  G+ ++ L   +   +    +  P  +   +   
Sbjct: 127 QEKVAETLKTYSELMEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIIDQNER 186

Query: 381 YHLSQTVRYLEMASLNE---KDCGLDIIA 406
           + +++ VR   +  L+E       ++I+ 
Sbjct: 187 FIVAEIVREKALRLLSEEVPHGIAVEILQ 215


>gi|303257594|ref|ZP_07343606.1| ribosome-associated GTPase EngA [Burkholderiales bacterium 1_1_47]
 gi|330999635|ref|ZP_08323344.1| ribosome biogenesis GTPase Der [Parasutterella excrementihominis
           YIT 11859]
 gi|302859564|gb|EFL82643.1| ribosome-associated GTPase EngA [Burkholderiales bacterium 1_1_47]
 gi|329574141|gb|EGG55717.1| ribosome biogenesis GTPase Der [Parasutterella excrementihominis
           YIT 11859]
          Length = 443

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 24/198 (12%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +    E  ++  K+ I G  NAGKS+L NAL  +D  I  D+PGTTRD + ++   +  
Sbjct: 166 KEIDEEEDFKHKIKVAIAGRPNAGKSTLINALIGEDRLIAFDMPGTTRDAIEVEFQYKDR 225

Query: 268 LVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISF 316
              + DTAG+R      + +EK  + +T   +E++++++LL + ++              
Sbjct: 226 DYTLIDTAGLRRKGKVFEAIEKFSVIKTLQAIESSNVVVLLLDAHAGIAEQDANIAGYIL 285

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                 +    K D    Y                EEL  K+  +   K   +       
Sbjct: 286 ESGRALVVGVNKWDSLDDYERRRVK----------EELERKLHFLRWAKIVYIS---ALE 332

Query: 377 KRHLYHLSQTVRYLEMAS 394
           KR L+HL   V     A+
Sbjct: 333 KRGLHHLLNAVNDAHTAA 350



 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 17/156 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D PG TRD    D  +      + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRHYGDGRIGDKPYLVIDTGGFEPIR 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSD-L 331
            + + KE   +  L +  +D++L L +  +    ++    +N          +  K++ L
Sbjct: 65  TEGIVKEMTGQAQLAITESDVVLFLVDGRAGLTPQDQRIAQNLRESGKKTYLVVNKAEGL 124

Query: 332 YSTYTEEY-------DHLISSFTGEGLEELINKIKS 360
             T   E+        + IS+  GEG++ L++ +  
Sbjct: 125 TETAKAEFYELALGEPYTISAAHGEGVKALMDLVLE 160


>gi|188583713|ref|YP_001927158.1| GTP-binding protein EngA [Methylobacterium populi BJ001]
 gi|179347211|gb|ACB82623.1| small GTP-binding protein [Methylobacterium populi BJ001]
          Length = 446

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  + +A+V D PG TRD    +  +     ++ DTAG+ E D
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGEGFIGDVAFRVIDTAGLEEAD 65

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D +      +T   +  AD +L + +  +          E+        I I  K++  
Sbjct: 66  ADSLLGRMRAQTEAAILEADAVLFVIDARAGVLPADRPFAELVRRSGCPVILIANKAEGG 125

Query: 333 STYTEEY---------DHLISSFTGEGLEELINKIKSIL 362
           +     Y             S+  GEGL  L + ++ +L
Sbjct: 126 AGMAGAYEAFSLGLGDPIPFSAEHGEGLGSLQDALREVL 164



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 100/251 (39%), Gaps = 15/251 (5%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET---EMQRRLS-MEGMSGE 153
            +     L  A+      R     +  +LEA+++  +I +        R  + +   SG 
Sbjct: 54  RVIDTAGLEEADADSLLGRMRAQTEAAILEADAVLFVIDARAGVLPADRPFAELVRRSGC 113

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213
              L     +    +    EA      +    +    E L  +     ++     + +  
Sbjct: 114 PVILIANKAEGGAGMAGAYEAFSLGLGDPIPFSAEHGEGLGSLQDALREVLPEPDEDEED 173

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E    G ++ I+G  NAGKS+L N +  +D  +V    G TRD +++D +  G  +K+ D
Sbjct: 174 EEGGKGLRVAIVGRPNAGKSTLINRMIGEDRLLVGPEAGITRDSISLDWEWRGRRIKLHD 233

Query: 274 TAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDF 322
           TAG+R     DD +EK  +      V  A+++++L +      K++++       +    
Sbjct: 234 TAGMRRRARIDDKLEKLAVSDGLRAVRFAEVVVVLLDATIPFEKQDLTIVDLVESEGRAL 293

Query: 323 IFIGTKSDLYS 333
           +    K DL +
Sbjct: 294 VIGLNKWDLVA 304


>gi|294776607|ref|ZP_06742076.1| small GTP-binding protein domain protein [Bacteroides vulgatus
           PC510]
 gi|294449522|gb|EFG18053.1| small GTP-binding protein domain protein [Bacteroides vulgatus
           PC510]
          Length = 396

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   IV+ G  N+GKSSL NAL  +D A+V+DIPGTT D ++  ++++        DT G
Sbjct: 10  NRLHIVLFGKRNSGKSSLINALTGQDTALVSDIPGTTTDAVSKAMEIQHIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-KEINSKKEISF-----PKNIDFIFIGTKSD 330
             +  ++ E   I RT   +E  D+ LLL ++ N + E  +      +NI  I I  K+D
Sbjct: 70  FDDEGELGEMR-ITRTLKAIERTDIALLLCEDGNCEDEKQWMEQLNKRNIPVILILNKAD 128

Query: 331 LYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +        D           +IS+    G+E+++  I   L   F +   +
Sbjct: 129 IRKDIASTRDCIEKECGQNPLIISAKEQTGIEKILQAILEKLPADFGQQTIT 180


>gi|94266754|ref|ZP_01290422.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [delta proteobacterium MLMS-1]
 gi|94270658|ref|ZP_01291794.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [delta proteobacterium MLMS-1]
 gi|93450717|gb|EAT01793.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [delta proteobacterium MLMS-1]
 gi|93452576|gb|EAT03153.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [delta proteobacterium MLMS-1]
          Length = 299

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L  + +AIVT  P TTR+ +   ++   Y + + DT G+    
Sbjct: 14  VALIGAPNAGKSTLLNRLLGQKIAIVTPKPQTTRNRILGVVNHRDYQMVLLDTPGLHRAK 73

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSD-- 330
           + +  E ++         D++  L +++S+ E         +        + +G K D  
Sbjct: 74  NRLNSEMVRLARNAAGEVDVVAYLVDVSSETEAEQRRHAQKLLREAGKPALLLGNKIDRI 133

Query: 331 -------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  L + + E Y        S+ TGEG +  + +   +L    +  P  IP+    
Sbjct: 134 GKEKLLPLIAAWQEVYPFQAIIPLSALTGEGCQLFLTEASRLLPTGPRLFPEDIPTDASE 193

Query: 380 LYHLSQTVR 388
            +   + +R
Sbjct: 194 RFICGEIIR 202


>gi|16125900|ref|NP_420464.1| GTP-binding protein EngA [Caulobacter crescentus CB15]
 gi|221234663|ref|YP_002517099.1| GTP-binding protein EngA [Caulobacter crescentus NA1000]
 gi|13423060|gb|AAK23632.1| GTP-binding protein [Caulobacter crescentus CB15]
 gi|220963835|gb|ACL95191.1| GTP-binding protein [Caulobacter crescentus NA1000]
          Length = 588

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 18/160 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+LFN LA K +AIV D PG TRD       L    +++ DTAG  +
Sbjct: 3   LKLAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYASGSLGDLELELIDTAGFED 62

Query: 280 TDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            DD   E     +T   +E AD+ L + +              I   ++   I    K++
Sbjct: 63  VDDSSLEARMRAQTEAAIEEADVSLFVFDSREGVTALDEVFAAILRKRDKPVIVAANKAE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSI 361
             +      +           IS   GEG+ EL   + + 
Sbjct: 123 GKAGEAGAGEAFRLGLGEPIPISGEHGEGMAELYAALLAF 162



 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 14/157 (8%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           E    +  L   + +   Q + G+   +     +I I+G  NAGKS+L N L  +D  + 
Sbjct: 147 EHGEGMAELYAALLAFEPQVEAGDDEDDDSKPIRIAIIGRPNAGKSTLVNRLLGEDRLLT 206

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILL 304
               G TRD +++D + +G  +++ DTAG+R      D +EK     T   +  A+++LL
Sbjct: 207 GPEAGITRDSISVDWEWDGRKIRLVDTAGLRRKAKVQDKLEKLSTADTIRAITFAEVVLL 266

Query: 305 LKEINSKKEISFPKNID--------FIFIGTKSDLYS 333
           + +     EI   +  D         +F+  K DL  
Sbjct: 267 VMDATHPFEIQDLQIADLAEREGRAVVFVLAKWDLIE 303


>gi|126700053|ref|YP_001088950.1| GTP-binding protein Era [Clostridium difficile 630]
 gi|254976030|ref|ZP_05272502.1| GTP-binding protein Era [Clostridium difficile QCD-66c26]
 gi|255093418|ref|ZP_05322896.1| GTP-binding protein Era [Clostridium difficile CIP 107932]
 gi|255307465|ref|ZP_05351636.1| GTP-binding protein Era [Clostridium difficile ATCC 43255]
 gi|255315163|ref|ZP_05356746.1| GTP-binding protein Era [Clostridium difficile QCD-76w55]
 gi|255517832|ref|ZP_05385508.1| GTP-binding protein Era [Clostridium difficile QCD-97b34]
 gi|255650948|ref|ZP_05397850.1| GTP-binding protein Era [Clostridium difficile QCD-37x79]
 gi|255656417|ref|ZP_05401826.1| GTP-binding protein Era [Clostridium difficile QCD-23m63]
 gi|260684017|ref|YP_003215302.1| GTP-binding protein [Clostridium difficile CD196]
 gi|260687677|ref|YP_003218811.1| GTP-binding protein [Clostridium difficile R20291]
 gi|296450136|ref|ZP_06891897.1| GTP-binding protein Era [Clostridium difficile NAP08]
 gi|296878517|ref|ZP_06902522.1| GTP-binding protein Era [Clostridium difficile NAP07]
 gi|306520828|ref|ZP_07407175.1| GTP-binding protein [Clostridium difficile QCD-32g58]
 gi|122973603|sp|Q182C3|ERA_CLOD6 RecName: Full=GTPase Era
 gi|115251490|emb|CAJ69323.1| GTP-binding protein Era [Clostridium difficile]
 gi|260210180|emb|CBA64374.1| GTP-binding protein [Clostridium difficile CD196]
 gi|260213694|emb|CBE05565.1| GTP-binding protein [Clostridium difficile R20291]
 gi|296260899|gb|EFH07733.1| GTP-binding protein Era [Clostridium difficile NAP08]
 gi|296430324|gb|EFH16166.1| GTP-binding protein Era [Clostridium difficile NAP07]
          Length = 297

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D P TTR+ +      E   +   DT GI +  
Sbjct: 7   VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDEEMQIVFLDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPK--NIDFIFIGTKSDLYS 333
           + + +  +K      +N DLIL + + +       +K I   +      I +  K D   
Sbjct: 67  NKLGEFMVKAATEAFKNVDLILFVVDDSKKIGPGDRKIIEDLRSVKTPIILVVNKIDQLD 126

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E +D                IS+  G+  + LI  I++ L    K  P  + + +  
Sbjct: 127 QKDELFDIIKMYDREGIFKEIVPISALKGKNTDTLIKVIQNYLEEGPKYFPDYMITDQPE 186

Query: 380 LYHLSQTVR 388
              +++ +R
Sbjct: 187 RVLIAELIR 195


>gi|134300318|ref|YP_001113814.1| GTP-binding protein Era [Desulfotomaculum reducens MI-1]
 gi|134053018|gb|ABO50989.1| GTP-binding protein Era [Desulfotomaculum reducens MI-1]
          Length = 302

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ + ++G  N GKS+L N L  + VAI++D P TTR  +   L      +   D
Sbjct: 6   EGYRSGF-VALVGRPNVGKSTLLNKLVGQKVAIMSDKPQTTRHKIHSVLTRNDAQMVFLD 64

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
           T GI +    + +  +      ++  D+ L L E +           E           +
Sbjct: 65  TPGIHKPRHKLGEYMVDVALGALKEVDVALFLVEASEAPGPGDQYIAEQLKGIKTPVFLM 124

Query: 326 GTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL                        +S+  GE +E LI+ I   L    +  P  
Sbjct: 125 LNKVDLIQREAVLERILQYKDLLPFAEVIPVSALAGENVERLIDTIIKYLPEGPQYYPAD 184

Query: 373 IPSHKRHLYHLSQTVR 388
           + + +   + +++ +R
Sbjct: 185 MVTDRPERFIMAEIIR 200


>gi|298291071|ref|YP_003693010.1| ribosome-associated GTPase EngA [Starkeya novella DSM 506]
 gi|296927582|gb|ADH88391.1| ribosome-associated GTPase EngA [Starkeya novella DSM 506]
          Length = 449

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L     ++ DTAG+ E
Sbjct: 3   MTVAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDGRLGHLSFRVIDTAGLEE 62

Query: 280 TDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                 E     +T   +++AD++L L +  +          +++       I I  K++
Sbjct: 63  AKAESLEGRMRAQTEAAIDDADVLLFLIDAKAGVTPSDRAFADLARRSGKHTILIANKAE 122

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
              +     D            S+  G+G+ +L+  +   L 
Sbjct: 123 ARGSEGGTLDAYALGLGDPVELSAEHGDGMADLVRALAECLP 164



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 121/316 (38%), Gaps = 36/316 (11%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE---TEMQRRLS-MEGMSGE 153
            +     L  A       R     +  + +A+ L  LI ++   T   R  + +   SG+
Sbjct: 53  RVIDTAGLEEAKAESLEGRMRAQTEAAIDDADVLLFLIDAKAGVTPSDRAFADLARRSGK 112

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213
            + L     +        ++A      +    +    + + D++    +     +  +  
Sbjct: 113 HTILIANKAEARGSEGGTLDAYALGLGDPVELSAEHGDGMADLVRALAECLPDDADEEED 172

Query: 214 EIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           E    G    ++ +LG  NAGKS+L NAL  +D  +     G TRD + +D++  G  ++
Sbjct: 173 ETTSEGGRRIRVAVLGRPNAGKSTLINALLGEDRLLTGPEAGITRDSIAVDIERHGVALR 232

Query: 271 ISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKN 319
           + DTAG+R+    DD +EK  +         A+++++L +     E        ++  + 
Sbjct: 233 VFDTAGMRKRARIDDKLEKLSVADGLRAARFAEVVVVLMDATHPFEEQDLRIADLAEREG 292

Query: 320 IDFIFIGTKSDL-------YSTYTEEYDHL-----------ISSFTGEGLEELINKIKSI 361
              +   +K+DL            EE DH            +S  TGEGL+ L+  +   
Sbjct: 293 RAVVLALSKADLVKDQPGIVKRMREEADHWLPQLRGAPVVLVSGLTGEGLDRLVRAVSEA 352

Query: 362 LSNKFKKLPFSIPSHK 377
                +++  +  +  
Sbjct: 353 HQVWNRRVATNPLNRW 368


>gi|295085093|emb|CBK66616.1| iron-only hydrogenase maturation protein HydF [Bacteroides
           xylanisolvens XB1A]
          Length = 396

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D+A+V++ PGTT D+++  ++++G       DT G
Sbjct: 10  NRLHITLFGRRNSGKSSLINALTGQDIALVSNTPGTTTDLVSKAMEIQGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISF---PKNIDFIFIGTKSD 330
             +  ++ E   I RT   +E  D+ LLL E  +   +KEI      KNI  I +  K D
Sbjct: 70  FDDEGELGELR-ISRTLKAIEKTDIALLLCEDTTFFHEKEILALLKEKNIPVIPVLNKID 128

Query: 331 L------YSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +       +TY EE    +  LIS+    G+E +   I   L + F +   +
Sbjct: 129 IRENSDHLATYIEEQCKIHPLLISAKEKIGIELIRQAILEKLPSDFGQQSIT 180


>gi|269114942|ref|YP_003302705.1| GTP-binding protein engA [Mycoplasma hominis]
 gi|268322567|emb|CAX37302.1| GTP-binding protein engA [Mycoplasma hominis ATCC 23114]
          Length = 441

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 31/233 (13%)

Query: 118 FENGKIDLLEAE--SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           F     + L  E   +A L+  ++     L++  + G   + Y   I             
Sbjct: 89  FLIDGKEPLTVEDYYVASLLR-KSNKHVLLAVNKLEGSNVNYYDNSI------------- 134

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
             +S   D     S    + I  L + I   ++     + + + +K+ +LG +N GKS+L
Sbjct: 135 --YSLGFDEIFPISAIHGDGIGNLLDKIIEKLNFSD--KDVESYFKLALLGKTNVGKSTL 190

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRT 292
            N LA ++ +IV+++ GTTRD ++  + + G + ++ DTAGI+    +    E   + R 
Sbjct: 191 LNTLANEERSIVSNVEGTTRDSVSSLIKINGEIFEVVDTAGIKRKSKLTESVEHYALMRA 250

Query: 293 FLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYSTYTE 337
              +E+A+L LL+ +   +          I++      I I  K DL    T 
Sbjct: 251 NQSIEDANLCLLVLDATEEVSHFSQNVIGIAYELKKPLILIVNKWDLIEKDTN 303



 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 20/177 (11%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           ++RN   + I+G  N GKS+LFN +  K  +IV D PG TRD L  D    G   ++ DT
Sbjct: 1   MMRNNI-VAIIGKPNVGKSTLFNKIINKRKSIVYDTPGVTRDRLYEDAIWTGKKFRVVDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
            GI   D+  +K+   +  + ++ A++I+ L +              +    N   +   
Sbjct: 60  GGITIEDEDFKKQIKLQAQIAIDEANVIVFLIDGKEPLTVEDYYVASLLRKSNKHVLLAV 119

Query: 327 TKSD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K +          +YS   +E    IS+  G+G+  L++KI   L+   K +    
Sbjct: 120 NKLEGSNVNYYDNSIYSLGFDEI-FPISAIHGDGIGNLLDKIIEKLNFSDKDVESYF 175


>gi|307637526|gb|ADN79976.1| GTP-binding protein [Helicobacter pylori 908]
 gi|325996115|gb|ADZ51520.1| GTP-binding protein [Helicobacter pylori 2018]
 gi|325997711|gb|ADZ49919.1| GTP-binding protein [Helicobacter pylori 2017]
          Length = 462

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 39/222 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERAYAFSSF-----------------GAPKSFNISVSHNRGISALIDAVLNALNLN 170

Query: 394 SLNEKDCGLDIIAENLRLASVSLGK----------ITGCVDV 425
            + E+D  +DI+ E+L   + +L +          I G V+V
Sbjct: 171 QIMEQDLDVDIL-ESLETPNNALEETKEEEIIQVGIIGRVNV 211



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 111/267 (41%), Gaps = 34/267 (12%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           + + I ++ E +R  +        S       ++   I + I+A L+      +      
Sbjct: 121 VINKIDNDKEKERAYAFSSFGAPKSFNISVSHNR--GISALIDAVLNALNLNQIMEQDLD 178

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             + + L   N   + + + K  EII+ G    I+G  N GKSSL NAL KK+ ++V+ +
Sbjct: 179 VDILESLETPN---NALEETKEEEIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSM 231

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEI 308
            GTT D +   + +    +   DTAGIR    I  +EK  + RT   +E + + LL+ ++
Sbjct: 232 AGTTIDPIDETILIGDQKICFVDTAGIRHRGKILGIEKYALDRTKKALEKSHIALLVLDV 291

Query: 309 NSK-----KEISFPKNID---FIFIGTKSDLYSTYTEEY---------------DHLISS 345
           ++      ++IS   +      I I  K D+     EE                    S 
Sbjct: 292 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMAALKRKFRFLEYAPVITTSC 351

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS 372
                ++E+ +KI  +     +++P S
Sbjct: 352 LKARHIDEIKHKIIEVYECFSRRIPTS 378


>gi|94267274|ref|ZP_01290827.1| Small GTP-binding protein domain:GTP-binding [delta proteobacterium
           MLMS-1]
 gi|93452066|gb|EAT02754.1| Small GTP-binding protein domain:GTP-binding [delta proteobacterium
           MLMS-1]
          Length = 453

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 11/127 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              ++  +G  N GKSSL N L   +  +V+++PGTTRD +   L       ++ DTAGI
Sbjct: 187 QPVRVAFIGRPNVGKSSLINRLLGSERMVVSEVPGTTRDSVDSLLIRGEKQYRLIDTAGI 246

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEI------NSKKEI--SFPKNIDFIFIG 326
           R    +    EK  + R    +E  DL LL+ +          K I     +    + + 
Sbjct: 247 RRKGKVRESVEKFSVMRALAALERCDLALLVIDAAEGITEQDTKVIGYGLERGRACLVLL 306

Query: 327 TKSDLYS 333
            K DL  
Sbjct: 307 NKWDLLK 313



 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 23/163 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSLFN +A    AIV   PG TRD     +        + DT GI E D
Sbjct: 10  VALVGRPNVGKSSLFNRIAGGRKAIVDPTPGVTRDRHYQQVSWNQRHFMLIDTGGI-EGD 68

Query: 282 DIVEKEGIK----RTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
              E    +    ++   V  AD+ILLL +             EI         ++  K 
Sbjct: 69  KSSEVPINRLIGEQSRQAVAEADVILLLLDARQGVTPDDYQVVEILRRSGKPVHYLVNKI 128

Query: 330 DLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSIL 362
           D      +                S+  G GL EL++ + + L
Sbjct: 129 DAPEQVDKLLPTFYELGVPQLWPLSASHGLGLAELLDAVVAEL 171


>gi|121607080|ref|YP_994887.1| GTP-binding protein EngA [Verminephrobacter eiseniae EF01-2]
 gi|166225932|sp|A1WE12|DER_VEREI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|121551720|gb|ABM55869.1| small GTP-binding protein [Verminephrobacter eiseniae EF01-2]
          Length = 468

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 74/197 (37%), Gaps = 32/197 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ + G  N GKS+L N    ++  +  D PGTTRD +T+  +  G   ++ DTAG+R 
Sbjct: 199 IRLAVAGRPNVGKSTLINTWLGEERLVAFDTPGTTRDAITVPFERNGQRFELVDTAGLRR 258

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              +    EK  + +T   +E+A ++LLL + +                     +    K
Sbjct: 259 KGKVFAAVEKFSVVKTLQAIESAHVVLLLLDASQGVTEQDAHIAGYILESGRAVVLAVNK 318

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D    Y  +                  H IS+   +GL  L   I         K+   
Sbjct: 319 WDATDDYQRQLLERSIETRLAFLKFASLHRISAKKRQGLGPLWTAIVQAHKAATCKMSTP 378

Query: 373 IPSHKRHLYHLSQTVRY 389
           + +       L + V++
Sbjct: 379 VLTR-----LLLEAVQF 390



 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G +N GKS+LFN L +   A+V D  G TRD    +     +   + DT G   + 
Sbjct: 5   MALVGRANVGKSTLFNRLTRSRDALVADFAGLTRDRHYGNGKQGRHEYIVIDTGGFEPDV 64

Query: 281 DDIVEKEGIKRTFLEVENA------------------DLILLLKEINSKKEISFPKNIDF 322
              + +E  ++T   +  A                  D+   L+       ++  K    
Sbjct: 65  ASGIYREMARQTQQAIAEADVVVFVVDVRAGVTAQDHDIAHYLRRAGKPCVLAANKAEGM 124

Query: 323 IF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
               G K   +        H +S+  G+G+  L+     
Sbjct: 125 QQDQGGKWAEFYELGLGTVHPVSAAHGQGIRSLVEMALE 163


>gi|224531730|ref|ZP_03672362.1| ribosome-associated GTPase EngA [Borrelia valaisiana VS116]
 gi|224511195|gb|EEF81601.1| ribosome-associated GTPase EngA [Borrelia valaisiana VS116]
          Length = 433

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 17/212 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +   S ++  +  +   K   I +    +L F     V     + +     FLK ++   
Sbjct: 107 LRKYSSKVILVLNKVDTKDKEILAHEFHNLGFKRYFLVSAVHCRGITKLRDFLKLEV--- 163

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              GK         K+ I+G  N+GKS+L N L+  +++IV+D PGTTRD +       G
Sbjct: 164 ---GKTNVEDEVDIKVGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKTKFTSNG 220

Query: 267 YLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF-- 316
            + +I DTAGIR     ++IVE   + R    ++  D++ LL ++     +  K+I+   
Sbjct: 221 KVFEIIDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVKEELTSQDKKIAHYV 280

Query: 317 -PKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
             K    I + +K DL       ++ L S   
Sbjct: 281 AKKGKGIIIVFSKWDLVGESKGYFEALKSRVK 312



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 16/169 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     +  +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFSFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS--KKEISFPKN-----IDFIFIGTKSDLYS 333
            D + K  +++    +E  +LILL+ ++N    ++    +         I +  K D   
Sbjct: 66  RDEISKIVVQKVLSSLEKVNLILLVLDVNEILPEDYQIIEKLRKYSSKVILVLNKVDTKD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                ++            S+    G+ +L + +K  +     +    I
Sbjct: 126 KEILAHEFHNLGFKRYFLVSAVHCRGITKLRDFLKLEVGKTNVEDEVDI 174


>gi|60683114|ref|YP_213258.1| hypothetical protein BF3665 [Bacteroides fragilis NCTC 9343]
 gi|60494548|emb|CAH09347.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 391

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  ++ A+V+DI GTT D +   +++ G       DTAG
Sbjct: 8   NRLHIALFGKRNSGKSSLINALTNQNAALVSDIAGTTTDPVYQPMEIHGIGPCVFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKK---EISFPKNIDFIFIGTKSD 330
             +  ++     I+RT    + AD+ L++    E++ ++   E+   +NI ++ +  K+D
Sbjct: 68  FDDEGELGSLR-IERTLQAADKADIALMVCCDTELSEEQRWIELLKERNIPYLLVLNKAD 126

Query: 331 LYSTYTE----------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L     E          ++  ++S+    G++ +   I   L    ++    
Sbjct: 127 LLEKPDEVADKLEQQTGQHPLIVSAKEKTGIDSIRQSILHRLPELNEQPDIV 178


>gi|53715179|ref|YP_101171.1| putative GTPase [Bacteroides fragilis YCH46]
 gi|253566314|ref|ZP_04843768.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52218044|dbj|BAD50637.1| putative GTPase [Bacteroides fragilis YCH46]
 gi|251945418|gb|EES85856.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 391

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  ++ A+V+DI GTT D +   +++ G       DTAG
Sbjct: 8   NRLHIALFGKRNSGKSSLINALTNQNAALVSDIAGTTTDPVYQPMEIHGIGPCVFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKK---EISFPKNIDFIFIGTKSD 330
             +  ++     I+RT    + AD+ L++    E++ ++   E+   +NI ++ +  K+D
Sbjct: 68  FDDEGELGSLR-IERTLQAADKADIALMVCCDTELSEEQRWIELLKERNIPYLLVLNKAD 126

Query: 331 LYSTYTE----------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L     E          ++  ++S+    G++ +   I   L    ++    
Sbjct: 127 LLEKPDEVADKLEQQTGQHPLIVSAKEKTGIDSIRQSILHRLPELNEQPDIV 178


>gi|108759687|ref|YP_631948.1| GTP-binding protein EngA [Myxococcus xanthus DK 1622]
 gi|122981004|sp|Q1D5X5|DER_MYXXD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|108463567|gb|ABF88752.1| GTP-binding protein EngA [Myxococcus xanthus DK 1622]
          Length = 459

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 20/174 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  + +A+V D PG TRD    D + EG      DT G    D
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGRRIALVQDEPGVTRDRHYADAEWEGRQFTFIDTGGFVPGD 64

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLY 332
            D + ++  ++  L V+  D+I+ + +  +    +               +    K D  
Sbjct: 65  EDQLLQQVREQAQLAVDECDVIVFVTDARAGLTAADEAVANYLRKSGKPVVLAANKLDNT 124

Query: 333 S----TYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           S        E+          +S+  G G++EL + + + L  K +      P 
Sbjct: 125 SGQMQALAGEFYRLGLGDVQALSAEHGLGMQELFDSVVARLPPKEEGEDAEAPP 178



 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 17/182 (9%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG-----YKIVILGHSNAGKSSLFN 237
           DVQ  S++  L  +  L + + + +   + GE           ++ I+G  N GKS+L N
Sbjct: 142 DVQALSAEHGLG-MQELFDSVVARLPPKEEGEDAEAPPDDGIIRLAIIGRPNVGKSTLVN 200

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFL 294
           A+ K+   + +D+ GTTRD +  +L  +   + ++DTAGIR    I   VE+  +     
Sbjct: 201 AILKEKRVVASDVAGTTRDPVDSELTYKDRKLLLTDTAGIRRKKSIAQRVEQFSVVAALK 260

Query: 295 EVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
            +E +D+ +LL +              ++  +    + +  K DL        +    S 
Sbjct: 261 VMERSDVAVLLMDATEPAVDQDAKLAGLAEERGRALVIVVNKWDLVGADQRRQETYRESL 320

Query: 347 TG 348
             
Sbjct: 321 KH 322


>gi|265767007|ref|ZP_06094836.1| GTP-binding protein Era [Bacteroides sp. 2_1_16]
 gi|263253384|gb|EEZ24860.1| GTP-binding protein Era [Bacteroides sp. 2_1_16]
          Length = 391

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  ++ A+V+DI GTT D +   +++ G       DTAG
Sbjct: 8   NRLHIALFGKRNSGKSSLINALTNQNAALVSDIAGTTTDPVYQPMEIHGIGPCVFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKK---EISFPKNIDFIFIGTKSD 330
             +  ++     I+RT    + AD+ L++    E++ ++   E+   +NI ++ +  K+D
Sbjct: 68  FDDEGELGSLR-IERTLQAADKADIALMVCCDTELSEEQRWIELLKERNIPYLLVLNKAD 126

Query: 331 LYSTYTE----------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L     E          ++  ++S+    G++ +   I   L    ++    
Sbjct: 127 LLEKPDEVADKLEQQTGQHPLIVSAKEKTGIDSIRQSILHRLPELNEQPDIV 178


>gi|254884683|ref|ZP_05257393.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319642352|ref|ZP_07997007.1| hypothetical protein HMPREF9011_02607 [Bacteroides sp. 3_1_40A]
 gi|254837476|gb|EET17785.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317386012|gb|EFV66936.1| hypothetical protein HMPREF9011_02607 [Bacteroides sp. 3_1_40A]
          Length = 396

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   IV+ G  N+GKSSL NAL  +D A+V+DIPGTT D ++  ++++        DT G
Sbjct: 10  NRLHIVLFGKRNSGKSSLINALTGQDTALVSDIPGTTTDAVSKAMEIQHIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-KEINSKKEISF-----PKNIDFIFIGTKSD 330
             +  ++ E   I RT   +E  D+ LLL ++ N + E  +      +NI  I I  K+D
Sbjct: 70  FDDEGELGEMR-ITRTLKAIERTDIALLLCEDGNCEDEKQWMEQLNKRNIPVILILNKAD 128

Query: 331 LYSTYT----------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +                +   +IS+    G+E+++  I   L   F +   +
Sbjct: 129 IRKDIASTRDRIEKECGQNPLIISAKEQTGIEKILQAILEKLPADFGQQTIT 180


>gi|254418441|ref|ZP_05032165.1| GTPase, putative [Brevundimonas sp. BAL3]
 gi|196184618|gb|EDX79594.1| GTPase, putative [Brevundimonas sp. BAL3]
          Length = 539

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 18/160 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+LFN L  K +A+V D PG TRD    D ++    + + DTAG  +
Sbjct: 3   LKVAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRRYADGNIGDMDLTLIDTAGYED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD +E    ++T   +E+A+L++ + +             E     +   I +  KS+
Sbjct: 63  VTDDSLEARMREQTEAALEDAELVMFMMDAREGVTSLDRIFAERLRKVHKPIILLANKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSI 361
              +     +           IS+  GEG+ +L   I++ 
Sbjct: 123 SRESGGGVGEAHALGFGEPVAISAEHGEGMADLYKAIRTA 162



 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 15/146 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I ++G  NAGKS+L N L   D  +     G TRD +++D   EG  +++ DTAG+R 
Sbjct: 178 IRIAVIGRPNAGKSTLINRLIGDDRLLTGPEAGITRDSISVDWTFEGKNIRLVDTAGMRR 237

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              +    EK  +  T   +  A++++L+ + +           ++   +    +++ +K
Sbjct: 238 KARVQEKLEKLSVADTIRAITFAEVVILMMDKDDAFDTQDLQLADLVEREGRALVYVASK 297

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEEL 354
            DL     +E    ++   G   ++L
Sbjct: 298 WDLE----DEPQARMAKLKGMAEDKL 319


>gi|170761539|ref|YP_001788258.1| GTP-binding protein Era [Clostridium botulinum A3 str. Loch Maree]
 gi|226741201|sp|B1KZM3|ERA_CLOBM RecName: Full=GTPase Era
 gi|169408528|gb|ACA56939.1| GTP-binding protein Era [Clostridium botulinum A3 str. Loch Maree]
          Length = 296

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 24/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NA+ K+ ++IV+  P TTR+ +   L  + Y +   DT GI +  
Sbjct: 7   VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             + +  +K     +++ DL+L L   + K         E      +    +  K D   
Sbjct: 67  HKLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKIDENP 126

Query: 331 ------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    TY+E    E    IS+  G+ ++ L   +   +    +  P  +   +   
Sbjct: 127 QEKVAETLKTYSELMEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIIDQNER 186

Query: 381 YHLSQTVRYLEMASLNE---KDCGLDIIA 406
           + +++ VR   +  L+E       ++I+ 
Sbjct: 187 FIVAEIVREKALRLLSEEVPHGIAVEILQ 215


>gi|94265607|ref|ZP_01289351.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [delta proteobacterium MLMS-1]
 gi|93453886|gb|EAT04244.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [delta proteobacterium MLMS-1]
          Length = 299

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L  + +AIVT  P TTR+ +   ++   Y + + DT G+    
Sbjct: 14  VALIGAPNAGKSTLLNRLLGQKIAIVTPKPQTTRNRILGVVNHRDYQMVLLDTPGLHRAK 73

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSD-- 330
           + +  E ++         D++  L +++S+ E         +        + +G K D  
Sbjct: 74  NRLNSEMVRLARNAAGEVDVVAYLVDVSSETEAEQRRHAQKLLREAGKPALLLGNKIDRI 133

Query: 331 -------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  L + + E Y        S+ TGEG +  + +   +L    +  P  IP+    
Sbjct: 134 GKEKLLPLIAAWQEVYPFQAIIPLSALTGEGCQLFLTEASRLLPTGPRLFPEDIPTDASE 193

Query: 380 LYHLSQTVR 388
            +   + +R
Sbjct: 194 RFICGEIIR 202


>gi|171913936|ref|ZP_02929406.1| GTP-binding protein [Verrucomicrobium spinosum DSM 4136]
          Length = 502

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 80/209 (38%), Gaps = 26/209 (12%)

Query: 208 SQGKLGEI----IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           ++G  GE      +   +I I+G  NAGKSSL NA+  +   IV++I GTTRD + I   
Sbjct: 203 AEGDEGEAAPAKPQKPLRIAIVGKPNAGKSSLVNAILGEQRTIVSEIAGTTRDAIDIPCT 262

Query: 264 LEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-- 318
           + G    + DTAG+R      D VE     +    +  ADL LL+ +      +   K  
Sbjct: 263 VAGKNYTLVDTAGLRRKAKIQDAVESFSAMQATKTIRRADLCLLMVDCAEGISMQDRKIA 322

Query: 319 ------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                     I +  K DLY        H          E L N  +     +   +   
Sbjct: 323 SLIVEYQKPCIILLNKFDLY--------HPTGKMKDRTEELLENAGREFFFLRHAPM--- 371

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           IP   +    L +  + +E      K+  
Sbjct: 372 IPVSAKEKQFLDKVFKAIERVHHGAKNPP 400



 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 14/150 (9%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+N   + I+G  N GKS+LFN LA K++AIV D PG TRD L            I DT 
Sbjct: 3   IQNPKMVAIVGRPNVGKSALFNRLAGKNIAIVHDRPGVTRDRLVATCRRGVVPFDIMDTG 62

Query: 276 GIRET-DDIVEKEGIKRTFLEVENADLILLLKE-------INSKKEISFPKNI-DFIFIG 326
           GI  T +D    +      L +E ADLIL + +       I+ +   +  K+    I + 
Sbjct: 63  GIGATIEDEFAAQVQAEANLAMEEADLILFVVDGVEGVTPIDLELSRTLRKSPKPIILVV 122

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
            K+D     +++     + F   G   L++
Sbjct: 123 NKAD-----SDKRRAHGAEFAKLGFNHLVD 147


>gi|123967979|ref|YP_001008837.1| GTP-binding protein EngA [Prochlorococcus marinus str. AS9601]
 gi|166225839|sp|A2BPL9|DER_PROMS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|123198089|gb|ABM69730.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str.
           AS9601]
          Length = 457

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
               + I+G  N GKSSL N++  +  AIV+DI GTT D +   +       KI DTAGI
Sbjct: 175 EKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNNWKIIDTAGI 234

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIG 326
           R   ++    E  GI R F  ++ +D+ +L+ +      +  ++++     +    I + 
Sbjct: 235 RRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAVDGVTDQDQKLAGRIEEQGRACIIVV 294

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
            K DL            SS   +  +EL +K+     +  K +  S  + +R        
Sbjct: 295 NKWDLIEK--------NSSTIYQVEKELRSKL--YFLHWSKMIFISALTGQRVDNIFEHA 344

Query: 387 VRYLEM 392
           +  +  
Sbjct: 345 LNAVNQ 350



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   +I DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD-- 330
           +     E   + FL +E A L LL+ + N   +  ++S  K     +   I    K +  
Sbjct: 66  ESEFLPEIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNKCEST 125

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINK-IKSILSNKFKKLPFSIPS 375
            L  +   E+        + +S+  G G  +L++  I  +  N  +     I  
Sbjct: 126 TLGISLASEFWKLGLGEPNPVSAIHGSGTGDLLDLVIGELPENNIQDDEEKIMM 179


>gi|332652574|ref|ZP_08418319.1| GTP-binding protein Era [Ruminococcaceae bacterium D16]
 gi|332517720|gb|EGJ47323.1| GTP-binding protein Era [Ruminococcaceae bacterium D16]
          Length = 298

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 23/205 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI ++G  I + G  N GKS+L NAL  + VAIVT+ P TTR+ +T  L+         D
Sbjct: 2   EIKKSGI-ITLCGRPNVGKSTLTNALVGEKVAIVTNKPQTTRNRITAILNRGESQFVFVD 60

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFI 325
           T G+ +    +    +      V + D I+LL E         ++ I   K      + +
Sbjct: 61  TPGLHKARTRLGDYMVNVVKESVADVDGIMLLVEPIPNIGAPEQQLIDRIKTLGCPSVLV 120

Query: 326 GTKSD----------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPF 371
             K D          +   YT+ +D      IS+ TGEG++EL+N ++  L N  +  P 
Sbjct: 121 INKVDTLEQKEKLLEVIQVYTQAHDFTAVVPISAKTGEGVDELLNVLEGFLPNGPQLFPE 180

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLN 396
            + S +     +++ +R   +  L+
Sbjct: 181 GMVSDQPERQMMAEILREKLLLCLD 205


>gi|148556031|ref|YP_001263613.1| GTP-binding protein EngA [Sphingomonas wittichii RW1]
 gi|148501221|gb|ABQ69475.1| small GTP-binding protein [Sphingomonas wittichii RW1]
          Length = 454

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 20/157 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G   ++ DTAG  ETD
Sbjct: 7   VAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDATLIGLDFRVIDTAGF-ETD 65

Query: 282 DIV--EKEGIKRTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTKSDL 331
           D          +T   V  AD+ L + +  +      +E++     ++   + +  K++ 
Sbjct: 66  DPQTLPGRMRAQTQAAVREADVALFMVDARAGVTPLDEEVALWLRGEDTPVVLVANKAEG 125

Query: 332 YSTYTEEYD---------HLISSFTGEGLEELINKIK 359
            +T    ++            S+  GEGL +L   ++
Sbjct: 126 KATEAGVHEAYGLGLGDPIPFSAEHGEGLVDLFEALR 162



 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-----YLVKISDT 274
            K+ I+G  NAGKS+L N +  +   I     G TRD + ID D          +++ DT
Sbjct: 185 LKLAIVGRPNAGKSTLINKILGEQRMITGPEAGITRDSIAIDWDWHAPDGTVRPIRLIDT 244

Query: 275 AGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID 321
           AG+R+     D +EK  +      V+ A++++LL +     E    +  D
Sbjct: 245 AGMRKRAKVQDKLEKLSVADGLRAVDFAEVVVLLLDATLGLEAQDLRIAD 294


>gi|255994066|ref|ZP_05427201.1| ribosome-associated GTPase EngA [Eubacterium saphenum ATCC 49989]
 gi|255993734|gb|EEU03823.1| ribosome-associated GTPase EngA [Eubacterium saphenum ATCC 49989]
          Length = 441

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 13/172 (7%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE--IIRNGYKIVILGHSNAGKSSL 235
           F   E   N        ++L L + +   +      +  +  +   + ++G  NAGKSSL
Sbjct: 133 FDFYELGFNDVQGVSAANMLGLGDVLDFIVDNAPKAQTTLDEDILSVAVIGRPNAGKSSL 192

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRT 292
            N LA ++ AIV+++ GTTRD +   +  +G    I DTAGIR      D VEK  + R 
Sbjct: 193 LNYLASENRAIVSEMQGTTRDSIDEVVTYKGDRYNIIDTAGIRRKSKIGDAVEKFSVIRA 252

Query: 293 FLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
              +E  D+ +L+ + N            ++       I    K D     T
Sbjct: 253 ISAIERCDVCVLMIDANIGVSEQDQRIAGLAKEAGKGIIVAVNKWDSIEKAT 304



 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 18/177 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N     I+G  N GKS+ FN L  K ++IV D  G TRD +        + + + DT 
Sbjct: 1   MMNRVTAAIIGSPNTGKSTFFNKLIGKKLSIVHDERGVTRDRIYGYTQWRNHEILLIDTG 60

Query: 276 GIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKN---IDFIFIG 326
           GI  ++ D +     ++  + +E AD+I+ L +  +      +EI+          + + 
Sbjct: 61  GIETDSKDEMMTNIRQQADVAIELADVIIFLVDGKAGLTSGDREIAMLLKKTRKKILLVV 120

Query: 327 TKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            K D     +  +D            S+    GL ++++ I          L   I 
Sbjct: 121 NKIDNAGIESAVFDFYELGFNDVQGVSAANMLGLGDVLDFIVDNAPKAQTTLDEDIL 177


>gi|83310443|ref|YP_420707.1| GTP-binding protein EngA [Magnetospirillum magneticum AMB-1]
 gi|123542640|sp|Q2W7M7|DER_MAGSA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|82945284|dbj|BAE50148.1| GTP-binding protein engA [Magnetospirillum magneticum AMB-1]
          Length = 464

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 18/171 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +AIV D+PG TRD       L G   ++ DTAG  +
Sbjct: 3   FTVAIIGRPNVGKSTLFNRLVGKRLAIVHDLPGVTRDRREGRASLLGMEFQVVDTAGFED 62

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGTKSD 330
              D +E     +T + V  AD+ LLL +  +     +  F  +        I +  K +
Sbjct: 63  DGGDSIEARMRHQTDMAVAEADVALLLIDSRAGVTPLDRHFADHLRRLPTPVILVANKCE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +     Y+           +S+  GEG+ EL   ++          P  
Sbjct: 123 GKAGAPGLYESYGLGMGEPVAVSAEHGEGMYELFEALRDHAIKAGALTPEG 173



 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 80/187 (42%), Gaps = 29/187 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N GKS+L N L  +D  +     G TRD + ++ +  G  +K+ DTAG+R+
Sbjct: 195 LTMAIVGRPNVGKSTLGNQLLGQDRLLTGPEAGLTRDAIAVEWEHRGRRMKLVDTAGLRK 254

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTK 328
                D +EK  +  T   +  +++++L+ +  +   K++++  +         +    K
Sbjct: 255 KAQIYDAIEKLSVGNTIETIRMSEVVVLVMDAAAILDKQDLTIARLVVEEGRALVLAINK 314

Query: 329 SDLYS------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D+                             +S+ TG G+E+L++ +    +   +++P
Sbjct: 315 WDVVDDPQTALKRLKDRLETSLPQARGVATVTLSALTGRGIEKLMDAVLDTWTKWNRRIP 374

Query: 371 FSIPSHK 377
            +  +  
Sbjct: 375 TAQLNRW 381


>gi|150002947|ref|YP_001297691.1| putative GTP-binding protein, putative GTPase [Bacteroides vulgatus
           ATCC 8482]
 gi|149931371|gb|ABR38069.1| putative GTP-binding protein, putative GTPase [Bacteroides vulgatus
           ATCC 8482]
          Length = 396

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   IV+ G  N+GKSSL NAL  +D A+V+DIPGTT D ++  ++++        DT G
Sbjct: 10  NRLHIVLFGKRNSGKSSLINALTGQDTALVSDIPGTTTDAVSKAMEIQHIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-KEINSKKEISF-----PKNIDFIFIGTKSD 330
             +  ++ E   I RT   +E  D+ LLL ++ N + E  +      +NI  I I  K+D
Sbjct: 70  FDDEGELGEMR-ITRTLKAIERTDIALLLCEDGNCEDEKQWMEQLNKRNIPVILILNKAD 128

Query: 331 LYSTYT----------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +                +   +IS+    G+E+++  I   L   F +   +
Sbjct: 129 IRKDIASTRDRIEKECGQNPLIISAKEQTGIEKILQAILEKLPADFGQQTIT 180


>gi|51473858|ref|YP_067615.1| GTP-binding protein EngA [Rickettsia typhi str. Wilmington]
 gi|81692277|sp|Q68W59|DER_RICTY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|51460170|gb|AAU04133.1| probable GTP-binding protein EngA [Rickettsia typhi str.
           Wilmington]
          Length = 447

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 15/156 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFKFLLIDTPGLEENP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLYS 333
           D + K  +++T   +  ADLI L+ +       + K   SF +  N   I +  K +   
Sbjct: 66  DNMGKRLMEQTTQAILEADLICLMVDGRSGVLPDDKLLSSFVRKYNKHCILVVNKCEKAF 125

Query: 334 TYTEEY-------DHLISSFTGEGLEELINKIKSIL 362
            + +EY         +IS+  G GL +L ++I + L
Sbjct: 126 DFDKEYYKLGFDSIVIISAEHGTGLIDLYDEIIAKL 161



 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 35/204 (17%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           L +K  I  +I+    G+ ++    IV+ G  NAGKS+  NA+   +  +     G TR+
Sbjct: 161 LSIKESIERNIADPFRGDCLQ----IVVSGRPNAGKSTFINAIINDERLLTGPEAGITRE 216

Query: 257 VLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINS--- 310
            + ID   +   +K+ DTAG+R+       +EK     T   ++ A+ ++L+ +  +   
Sbjct: 217 SIEIDWQYKNTHIKLIDTAGLRKKSTITASLEKLSTSDTINAIKFANTVILMIDALAHLK 276

Query: 311 KKEISFPKN-----IDFIFIGTKSDLYSTYTEEYDH--------------------LISS 345
           +++++   +        I +  K DL     +E                        IS+
Sbjct: 277 QQDLNIANHIINEGRSIIIVVNKWDLVEESEKEAFQAEFYYQINTHLPQIKGVPVLFISA 336

Query: 346 FTGEGLEELINKIKSILSNKFKKL 369
              + +E++++    I     KK+
Sbjct: 337 INKQNIEQVLDACLKIYKIWNKKI 360


>gi|39936158|ref|NP_948434.1| GTP-binding protein EngA [Rhodopseudomonas palustris CGA009]
 gi|192291876|ref|YP_001992481.1| GTP-binding protein EngA [Rhodopseudomonas palustris TIE-1]
 gi|81698158|sp|Q6N586|DER_RHOPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|229784137|sp|B3Q9V3|DER_RHOPT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|39650013|emb|CAE28536.1| GTP-binding protein [Rhodopseudomonas palustris CGA009]
 gi|192285625|gb|ACF02006.1| small GTP-binding protein [Rhodopseudomonas palustris TIE-1]
          Length = 459

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 82/199 (41%), Gaps = 29/199 (14%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +      I     ++ I+G  NAGKS+  N L  ++  + +   GTTRD + ++++ +G 
Sbjct: 176 ADQSEEAIATRPIRVAIVGRPNAGKSTFINRLLGEERLLTSPEAGTTRDSIAVEVEWKGR 235

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--- 321
             ++ DTAG+R    I    EK  +      V  A++++L+ +  ++ E    +  D   
Sbjct: 236 DFRVFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRFEEQDLRIADLVE 295

Query: 322 -----FIFIGTKSDL-------YSTYTEEYDHLISSFT-----------GEGLEELINKI 358
                 +    K DL        +    + DH +               GEG++ L+  I
Sbjct: 296 REGRALVIAVNKWDLIERQGGQIAQLRTDADHWLPQIKGVPIVATSGMLGEGVDRLMQAI 355

Query: 359 KSILSNKFKKLPFSIPSHK 377
           +   +   +++P +  +  
Sbjct: 356 QDAYAVWNRRVPTAALNRW 374



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  + +A+V D PG TRD    +  L      + DTAG+ E
Sbjct: 3   FTLAIIGRPNVGKSTLFNRLVGQKLALVDDAPGVTRDRREGEGRLGDLNFTLIDTAGLDE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                      ++T   +E AD +L + +  +          + +   N   + +  KS+
Sbjct: 63  GPKGSLTARMQEQTETAIELADALLFVFDARAGLTPNDRAFADFARRANKPVVLVANKSE 122

Query: 331 LYS---------TYTEEYDHLISSFTGEGLEELINKIKSIL 362
             S                  IS+  GEG+ EL + ++ +L
Sbjct: 123 GKSGEIGAMESYALGLGDPVQISAEHGEGMGELYDALRPLL 163


>gi|331091567|ref|ZP_08340404.1| GTP-binding protein Era [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330403732|gb|EGG83286.1| GTP-binding protein Era [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 298

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   V   DT 
Sbjct: 5   YKSGF-VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEQGQVVFVDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGT 327
           GI +  + + +  +      +   D++L L E ++          E         I +  
Sbjct: 64  GIHKAKNKLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEKHIAEQLKRVKTPVILVIN 123

Query: 328 KSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D             Y + YD      +S+  GE  EEL+  +   L    +       
Sbjct: 124 KVDMVKKDEVFAFIDAYQKIYDFAAIVPVSAKNGENTEELLKVLFQYLPYGPQFYDEDTV 183

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +     +++ +R   + +LNE+
Sbjct: 184 TDQPQRQIVAEIIREKALHALNEE 207


>gi|332686552|ref|YP_004456326.1| GTP-binding protein EngA [Melissococcus plutonius ATCC 35311]
 gi|332370561|dbj|BAK21517.1| GTP-binding protein EngA [Melissococcus plutonius ATCC 35311]
          Length = 436

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 17/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +A + ++IV D+PG TRD +    +  G    I DT GI   +
Sbjct: 6   IAIVGRPNVGKSTIFNRIAGERISIVEDVPGVTRDRIYATGEWLGQAFSIIDTGGIDLGN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           +   ++  ++  + +E AD+IL +  I            +I +  N   I    K+D   
Sbjct: 66  EPFIEQIKQQAEIAIEEADVILFITSIREGITDADELVAKILYRSNKPIILAVNKADNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINK 357
             +E Y+           IS   G G+ +++++
Sbjct: 126 LRSEVYEFYSLGLGDPIPISGSHGLGIGDMLDE 158



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 34/187 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
           K  ++G  N GKSSL NA+  ++  IV++I GTTRD +        G    + DTAG+R+
Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSEIEGTTRDAIDTYFTSPNGQKFLMIDTAGMRK 235

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFIG 326
              +    EK  + R    +E +D++L++  +N+++ I          +       I + 
Sbjct: 236 RGKVYENTEKYSVMRAMRAIERSDIVLMV--LNAQEGIREQDKRVAGYAHEAGRGIIILV 293

Query: 327 TKSDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFKK 368
            K D     T                        +S+ T + L +L   I+ +   +  +
Sbjct: 294 NKWDAVEKETNTLHEFEEEIRNEFQYLDYAPILFVSAKTKQRLNKLPALIEEVSMGQNLR 353

Query: 369 LPFSIPS 375
           +P S+ +
Sbjct: 354 IPSSLLN 360


>gi|198275294|ref|ZP_03207825.1| hypothetical protein BACPLE_01453 [Bacteroides plebeius DSM 17135]
 gi|198271877|gb|EDY96147.1| hypothetical protein BACPLE_01453 [Bacteroides plebeius DSM 17135]
          Length = 394

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 18/165 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  NAGKSSL NAL  +D A+V+DIPGTT D +   +++ G       DTAG
Sbjct: 8   NRLHIGLFGKRNAGKSSLINALTHQDTALVSDIPGTTTDPVFKAMEIHGLGPCVFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-KEINSKKEISF-----PKNIDFIFIGTKSD 330
             +  ++ E   I++T   +E  D+ L++  + +  +E+ +      KN+  I+I  K D
Sbjct: 68  FDDEGELGELR-IRQTQRALEKTDIALMVCTDEHLDEELHWQRLLKEKNVPVIWILNKCD 126

Query: 331 LYSTYTE---EYDHLI-------SSFTGEGLEELINKIKSILSNK 365
           L S   +     +H         S+ TG+GL++++  +++ L ++
Sbjct: 127 LLSDAEQTMRRIEHQCGQVPLLVSTLTGKGLDDILRSLRNKLPDE 171


>gi|313114942|ref|ZP_07800438.1| ribosome-associated GTPase EngA [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622735|gb|EFQ06194.1| ribosome-associated GTPase EngA [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 447

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L  + +AIV D PG TRD +  + +  G+   + DT GI  + 
Sbjct: 6   VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWNGHDFLLVDTGGIEPKA 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            + +     ++  + ++ AD I+++ ++             +    +   I    K D  
Sbjct: 66  TEGILAHMREQAQIAIDTADCIIMVVDVRDGLTAADEDVAHMLRRSHKPIILAVNKCDKV 125

Query: 331 ------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 +Y  Y   +D ++  SS  G G  +L++ + + L      +   
Sbjct: 126 GDAPMEMYEFYNLGFDEVMPISSVHGHGTGDLLDAVCAHLDFSETVVEED 175



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 83/208 (39%), Gaps = 31/208 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +H+   +   +  +   + I+G  N GKSSL N +  ++  IV +  GTTRD 
Sbjct: 156 DLLDAVCAHLDFSET-VVEEDRIPVAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDA 214

Query: 258 LTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +   +D        +DTAG+R+     D +E+  + R    VE + + L+L +       
Sbjct: 215 IDTPVDNAYGKFIFTDTAGLRKRSNITDGLERYMVVRALAAVERSRVALILVDATVGFTE 274

Query: 309 --NSKKEISFPKNIDFIFIGTKSD-------------------LYSTYTEEYDHLISSFT 347
             +     +  +    I +  K D                    +S         IS+ T
Sbjct: 275 QDSKVAGYAHDQGKACIIVVNKWDAVEGKETNTMELQRRDYAECFSFMGYAPIIFISAQT 334

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPS 375
           G  + +L+  I+ + S    ++P  + +
Sbjct: 335 GYNVNKLMQLIRDVDSQNGARVPTGVLN 362


>gi|95930678|ref|ZP_01313412.1| GTP-binding protein Era [Desulfuromonas acetoxidans DSM 684]
 gi|95133330|gb|EAT14995.1| GTP-binding protein Era [Desulfuromonas acetoxidans DSM 684]
          Length = 303

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 22/202 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              +     R+G+ + I+G  N GKS+L N +  + +AI  + P TTR+ +      +  
Sbjct: 3   DSTRTESTFRSGF-VSIVGRPNVGKSTLLNQILGQKIAITANKPQTTRNRILGIHSEDNA 61

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKN 319
            V   DT GI +    + +  + +        D+++ L E   +         ++    +
Sbjct: 62  QVLFLDTPGIHKATGKLNQYMVDQALSACRGVDVVVFLVEATDRVGGGDDFILDVLAQSD 121

Query: 320 IDFIFIGTKSD---------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSNKF 366
           I  + +  K D         L + Y E +D       S+  G G+E L+  ++ +L    
Sbjct: 122 IPVVLVINKVDLVEKDKLLPLIAQYAERFDFKEIIPLSALNGSGVERLVASVRDMLPEGP 181

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
              P  + +     + + + +R
Sbjct: 182 PYYPEEMVTDLPERFIVGEMIR 203


>gi|260575150|ref|ZP_05843151.1| small GTP-binding protein [Rhodobacter sp. SW2]
 gi|259022772|gb|EEW26067.1| small GTP-binding protein [Rhodobacter sp. SW2]
          Length = 492

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 18/173 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  + +A+V D PG TRD+   D  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGRKLALVDDQPGVTRDLREGDAKLFDLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD ++    + T   VE AD+ L L +             +I   KN   I    KS+
Sbjct: 63  VTDDSLQGRMRRLTERAVEMADVCLFLIDGRVGVTPTDEVFADILRRKNAHVIVGVNKSE 122

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +      +            S+  GEG+++L + ++ I  +  ++     P
Sbjct: 123 GKAGDAGAIEAWSLGLGDPIRLSAEHGEGMDDLYDILRPIGDSFAERAEADAP 175



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 29/186 (15%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
                +I ++G  NAGKS+L N +   D  +     G TRD +++  D     ++I DTA
Sbjct: 199 YEKPLQIAVIGRPNAGKSTLINKIVGFDRMLTGPEAGITRDAISVKADWFDTPIRIFDTA 258

Query: 276 GIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------FIF 324
           G+R+     D +EK  +      V  A+++++L ++ +  E    +  D         + 
Sbjct: 259 GMRKKARISDKLEKMSVSDGLRAVRFAEVVVVLLDVETPFETQDLRIADYAETEGRAVVV 318

Query: 325 IGTKSDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNKF 366
              K DL     E+                      +S+ TG GL+ L   I        
Sbjct: 319 AVNKWDLEGEKQEKLAELREMFERLLPQLRGAPLVTVSAKTGRGLDRLHAAILKAHDVWN 378

Query: 367 KKLPFS 372
           +++P +
Sbjct: 379 RRVPTA 384


>gi|260753034|ref|YP_003225927.1| GTP-binding protein EngA [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552397|gb|ACV75343.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 454

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 18/198 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD    D +L G   ++ DTAG  + D
Sbjct: 4   VAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDAELIGMPFRVIDTAGFEDED 63

Query: 282 DIVE-KEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD-- 330
                     +T   V+  D+ L + +         +EI+          I +  K +  
Sbjct: 64  PASLPGRMRVQTEAAVKECDVALFVIDARQGITPLDEEIARWLRALGKPIIVLANKCEGK 123

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                L   Y+  +      S+  GEGL  L   ++  +     +   S           
Sbjct: 124 GGESGLLEAYSLGFGEPLPFSAEHGEGLVGLFQALRPFVEGDSLEENTSSEDEDEEKSEE 183

Query: 384 SQTVRYLEMASLNEKDCG 401
              +  L++A +   + G
Sbjct: 184 EIDLSPLQLAIVGRPNAG 201



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  ++ I+G  NAGKS+L N L   D  I     G TRD + ID   +G  V++ DTAG+
Sbjct: 188 SPLQLAIVGRPNAGKSTLINRLIGVDRMITGPEAGITRDSIAIDWSWQGRPVRLIDTAGL 247

Query: 278 RETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334
           R+     D +E+  +  TF  ++ A++++LL +     E    +  D +    +S + + 
Sbjct: 248 RKKARVVDKMERLSVMDTFRTIDYAEVVVLLLDGTQGLEGQDLRIADRVLEEGRSLIIAI 307

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSI 361
              +     S+F     E L + +  +
Sbjct: 308 NKWDMVENPSAFLQAIREGLNDGLAQV 334


>gi|111115337|ref|YP_709955.1| GTP-binding protein EngA [Borrelia afzelii PKo]
 gi|122956350|sp|Q0SMZ9|DER_BORAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|110890611|gb|ABH01779.1| GTP-binding protein [Borrelia afzelii PKo]
          Length = 433

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 17/212 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +   S ++  +  +   K     +    +L F     V     + +     FLK ++   
Sbjct: 107 LRKYSNKVILVLNKVDAKDKEFLAHEFHNLGFKRCFLVSAVHCRGIAKLRDFLKVEV--- 163

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              G+         K+ I+G  N+GKS+L N L+  +++IV+D PGTTRD +   L   G
Sbjct: 164 ---GEANIEDEVNIKVGIIGKPNSGKSTLINYLSGNEISIVSDKPGTTRDFIKTKLTRNG 220

Query: 267 YLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF-- 316
            + +I DTAGIR     ++IVE   + R    ++  D++ LL ++     +  K+I+   
Sbjct: 221 KVFEIIDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVKEELTSQDKKIAHYV 280

Query: 317 -PKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
             K    I + +K DL       ++ L S   
Sbjct: 281 TKKGKGIIIVFSKWDLVKESKGYFEALKSRVK 312



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 16/169 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I  +  G TRD++     +  +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITENTYGVTRDLVEEVCKVGSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNI--DFIFIGTKSDLYS 333
            D + K  +++    +E  DLILL+ ++N       + I   +      I +  K D   
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDVNEILLEDYQIIERLRKYSNKVILVLNKVDAKD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                ++            S+    G+ +L + +K  +     +   +I
Sbjct: 126 KEFLAHEFHNLGFKRCFLVSAVHCRGIAKLRDFLKVEVGEANIEDEVNI 174


>gi|78045135|ref|YP_359291.1| GTP-binding protein Era [Carboxydothermus hydrogenoformans Z-2901]
 gi|123576937|sp|Q3AEZ3|ERA_CARHZ RecName: Full=GTPase Era
 gi|77997250|gb|ABB16149.1| GTP-binding protein Era [Carboxydothermus hydrogenoformans Z-2901]
          Length = 298

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 92/217 (42%), Gaps = 23/217 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+L N +    +AI++D P TTR+ +   L  E   +   DT 
Sbjct: 3   YKSGF-VSIVGRPNVGKSTLLNQVVGTKIAIMSDKPQTTRNKIRAVLTSEKGQIIFIDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGT 327
           G+++  + + +  +K+    ++  D++L + E NS    +E    K         I +  
Sbjct: 62  GVQKPRNKLGEFMLKQALTSLDEVDVLLYVVEANSPIGPQENYLLKTLAEVKTPIILVVN 121

Query: 328 KSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D             + S       + IS+  G G+ EL+  I  +L       P    
Sbjct: 122 KIDVVKMIEAQTLARQIESRLKVAKTYYISALNGTGVSELVEGIFELLPEGPPYYPEGQV 181

Query: 375 SHKRHLYHLSQTVR-YLEMASLNEKDCGLDIIAENLR 410
           +     + +++ +R  +   +  E    + ++ E ++
Sbjct: 182 TDYPERFIIAEYIREQILHLTREEIPHSVAVVVEEIK 218


>gi|283850821|ref|ZP_06368107.1| small GTP-binding protein [Desulfovibrio sp. FW1012B]
 gi|283573744|gb|EFC21718.1| small GTP-binding protein [Desulfovibrio sp. FW1012B]
          Length = 444

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 18/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN LAK+  AI  D PG TRD L   ++L+  +V + DT G+  + 
Sbjct: 5   VAIVGRPNVGKSTLFNRLAKRPKAITHDRPGVTRDRLEATVELDDRIVTLIDTGGMDFDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY 332
            + +E++ + +  + +  AD++L L +  + +        E     +   +    K D  
Sbjct: 65  PEGLERQIVVQAEIALNMADVVLFLVDGKAGRTALDDEMAERLRRTDKPVVVAVNKVDGA 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                  +            S+  G G+ +L   +  +L    +    
Sbjct: 125 EKINALTNDFHAWGFAMMPISAAHGHGVNDLAGALAELLPEVSENKDE 172



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 6/117 (5%)

Query: 188 SSKEVLNDILFLKNDISSHISQGK---LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +    +ND+     ++   +S+ K     E +  G ++ +LG  NAGKSSL NAL  +D 
Sbjct: 147 AHGHGVNDLAGALAELLPEVSENKDEPRAEPVEAGIRLAVLGRPNAGKSSLVNALLGEDR 206

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVEN 298
            IV+++PGTTRD + + +   G      DTAG+R+     D VE+  + +     + 
Sbjct: 207 MIVSEVPGTTRDAVDVAVIRNGRRYVFVDTAGVRKRTRITDGVERYSVNKALGSAKR 263


>gi|38233787|ref|NP_939554.1| GTP-binding protein EngA [Corynebacterium diphtheriae NCTC 13129]
 gi|38200048|emb|CAE49724.1| Putative GTP-binding protein [Corynebacterium diphtheriae]
          Length = 547

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 81/218 (37%), Gaps = 25/218 (11%)

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           +  + DF E +  ++++ ++          ++      G       N   + I+G  N G
Sbjct: 73  VFDEADFGEADFGEDYTDEDW--------EELERAFGVGSRAIESENLCTVAIVGRPNVG 124

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSSL N    +  A+V D PG TRD ++   D  G    + DT G       +     ++
Sbjct: 125 KSSLVNRFLGRREAVVEDFPGVTRDRISYLADWGGRRFWVQDTGGWDPNVKGIHAVIARQ 184

Query: 292 TFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL- 342
               +  AD+I+++ +    I     +   K     +  I +  K D  S Y +  +   
Sbjct: 185 AETAMATADVIVMVVDTKVGITETDSVMARKLQKSEVPVILVANKFDSDSQYADMAEFYA 244

Query: 343 --------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   +S+  G G  +++ +I +      +     
Sbjct: 245 LGLGDPWPVSAQHGRGGADVLEQILAAFPETPRATSIV 282



 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 27/222 (12%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D    S++        L+  +++     +   I+    ++ ++G  N GKSSL N ++ +
Sbjct: 249 DPWPVSAQHGRGGADVLEQILAAFPETPRATSIVEGPRRVALVGKPNVGKSSLLNKMSGE 308

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENA 299
           D ++V ++ GTT D +   + L+ +L K  DTAG+R+        E     RT   ++ A
Sbjct: 309 DRSVVDNVSGTTVDPVDSIVKLDKHLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAA 368

Query: 300 DLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS-----TYTEEYD------ 340
           ++ + + + +            +        + +  K DL           E D      
Sbjct: 369 EICIFMIDSSEPVSEQDQRVLAMILDAGKALVLVFNKWDLMEEDRRWELEREIDLQLAHI 428

Query: 341 -----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                  IS+ TG  L+ L   +   L +  K++     ++ 
Sbjct: 429 PWVKRINISAKTGRALQRLEPYMLEALESWDKRVTTGQLNNW 470


>gi|188518230|ref|ZP_03003765.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|188998276|gb|EDU67373.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
          Length = 442

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 11/125 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +  +K  I+G  N GKSSL N +  +   IV    G+TRD +  D         I DTAG
Sbjct: 172 QERFKFCIIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDSIDNDFSYHNKKYTIIDTAG 231

Query: 277 IRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
           +R      + VEK  + RT   +E + LILL+ + +            +++  NI  I +
Sbjct: 232 VRRKGKIVEAVEKYAVLRTQKAIERSQLILLVLDGSEPFKEQDEVVGGLAYDANIPTIIV 291

Query: 326 GTKSD 330
             K D
Sbjct: 292 VNKWD 296



 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 19/158 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSLFN +  +  +IV D PG TRD +    +       + DT GI  ++
Sbjct: 4   IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDVGNWLTRDFMLIDTGGIISSE 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS-----FPKNIDFIFIGTKSDL 331
           D  +    ++    +  A+ I+ L        N  K+I+       K+   I +  K + 
Sbjct: 64  DTYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAKDKKVILVVNKVES 123

Query: 332 YSTYTEEYD---------HLISSFTGEGLEELINKIKS 360
              Y  E +           IS+  G G+ +L++++  
Sbjct: 124 EKYYFNEGELYSFGFGKFFKISAEHGIGMGDLLDELVK 161


>gi|289207923|ref|YP_003459989.1| ribosome-associated GTPase EngA [Thioalkalivibrio sp. K90mix]
 gi|288943554|gb|ADC71253.1| ribosome-associated GTPase EngA [Thioalkalivibrio sp. K90mix]
          Length = 484

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 74/194 (38%), Gaps = 29/194 (14%)

Query: 207 ISQGKLGEIIRN--GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           + +      + +  G ++ I+G  N GKS+L N +   +  + TD+ GTTRD + +    
Sbjct: 184 LDEASQQAALDDWPGIRVAIVGRPNVGKSTLVNRILGDERVVATDVAGTTRDSIFVPFSR 243

Query: 265 EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KE 313
           +G    + DTAG+R    +    EK  + +T   +E A +++L+ +  +           
Sbjct: 244 DGQDYTLIDTAGVRRRARVHEVIEKFSVIKTLQAIEAAHVVILVMDAQAGLSEQDAHLLG 303

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI----------------SSFTGEGLEELINK 357
           +        +    K D  +    E                     S+  G  +  L+  
Sbjct: 304 LVIDSGRALVLAVNKWDGMAPEERERVRDDLDRRLGFVNFARLRLISALHGTNVGHLLED 363

Query: 358 IKSILSNKFKKLPF 371
           ++   ++ F K+  
Sbjct: 364 VQEAHTSAFAKVST 377



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 17/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D+ G TRD       +  +   + DT G+    
Sbjct: 5   IALVGRPNVGKSTLFNQLTRSRDALVADVAGLTRDRQYGIGKVGDFPYLVVDTGGLSGEG 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +++   ++T   V  AD +L L +             +      +    +  K+D   
Sbjct: 65  AEMDRAMAEQTQRAVAEADHVLFLVDARDGLTPQDQAIADQLRSAGVKARVVVNKTDGLD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKI 358
                 +           I++  G G++ L+ K+
Sbjct: 125 ADAVSAEFYTLGMGEITSIAAAHGRGIKGLMQKV 158


>gi|185178903|ref|ZP_02964672.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|195867881|ref|ZP_03079880.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225551179|ref|ZP_03772125.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|184209162|gb|EDU06205.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|195660458|gb|EDX53716.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225378994|gb|EEH01359.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
          Length = 442

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 14/144 (9%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +  +K  I+G  N GKSSL N +  +   IV    G+TRD +  D         I DTAG
Sbjct: 172 QERFKFCIIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDSIDNDFSYHNKKYTIIDTAG 231

Query: 277 IRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
           +R      + VEK  + RT   +E + LILL+ + +            +++  NI  I +
Sbjct: 232 VRRKGKIVEAVEKYAVLRTQKAIERSQLILLVLDGSEPFKEQDEVVGGLAYDANIPTIIV 291

Query: 326 GTKSDLYSTYTEEYDHLISSFTGE 349
             K D       +  H +     +
Sbjct: 292 VNKWD---NIANKNSHTMEMVKKQ 312



 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 19/158 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSLFN +  +  +IV D PG TRD +    +       + DT GI  ++
Sbjct: 4   IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDVGNWLTRDFMLIDTGGIISSE 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS-----FPKNIDFIFIGTKSDL 331
           D  +    ++    +  A+ I+ L        N  K+I+       K+   I +  K + 
Sbjct: 64  DTYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAKDKKVILVVNKVES 123

Query: 332 YSTYTEEYD---------HLISSFTGEGLEELINKIKS 360
              Y  E +           IS+  G G+ +L++++  
Sbjct: 124 EKYYFNEGELYSFGFGKFFKISAEHGIGMGDLLDELVK 161


>gi|126736006|ref|ZP_01751750.1| GTP-binding protein EngA [Roseobacter sp. CCS2]
 gi|126714563|gb|EBA11430.1| GTP-binding protein EngA [Roseobacter sp. CCS2]
          Length = 485

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 18/158 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  +      + D+AG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEGRIADLRFTVIDSAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK-- 328
            TDD ++    + T   VE AD+ L + +  +          +I   KN + I    K  
Sbjct: 63  ATDDSLQGRMRRLTERAVEMADVCLFMIDARAGVLPADEVFADILRKKNANVILAANKGE 122

Query: 329 -----SDLYSTYTEEY--DHLISSFTGEGLEELINKIK 359
                + +   Y         +S+  GEG+ EL++ ++
Sbjct: 123 GKAADASILEAYALGLGEPIRMSAEHGEGMGELMDVLR 160



 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 70/195 (35%), Gaps = 45/195 (23%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I ++G  NAGKS+L N +  ++  +     G TRD +++  D  G  ++I DTAG+R+
Sbjct: 198 LQIAVVGRPNAGKSTLINKIIGEERLLTGPEAGITRDAISVQQDWGGVPMRIFDTAGMRK 257

Query: 280 TDDIV---EKEGIKRTFLEVENA----------------DLILLLKEINSKKEISFPKNI 320
              +    EK  +      V+ A                DL +         +++  +  
Sbjct: 258 KAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDVEIPFEQQDLRI--------ADLAEREGR 309

Query: 321 DFIFIGTKSD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
             +    K D                  L           +S+ TG+GL+ L   I    
Sbjct: 310 AVVVAVNKWDVEVEKQSKLKELRQDFERLLPQLRGAPLVTVSAKTGKGLDRLQQAIMRAH 369

Query: 363 SNKFKKLPFSIPSHK 377
               +++  +  +  
Sbjct: 370 DVWNRRVSTANLNRW 384


>gi|261367335|ref|ZP_05980218.1| ribosome-associated GTPase EngA [Subdoligranulum variabile DSM
           15176]
 gi|282570094|gb|EFB75629.1| ribosome-associated GTPase EngA [Subdoligranulum variabile DSM
           15176]
          Length = 447

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS++FN L  + +AIV D PG TRD +  D +  G    + DT GI    
Sbjct: 6   VAIVGRPNVGKSTIFNKLTGQRLAIVEDTPGVTRDRIFCDCEWCGNKFLLVDTGGIEPRI 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLY 332
           DD +     ++  + +++AD I+++ E+        ++I+          +    K D  
Sbjct: 66  DDGLLAHMREQAQIAIDSADCIIMVTELTNGVTPQDQDIAGMLMRSGKPVVLAVNKCDKI 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                E              +S   G G  +L++ + + L          
Sbjct: 126 GEPPMELYDFYSLGLGEIIPVSGVHGHGTGDLLDAVCAHLDFTRDDEDGD 175



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 82/204 (40%), Gaps = 29/204 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +H+   +  E   +   + ++G  N GKSSL N +  ++  IV +  GTTRD 
Sbjct: 156 DLLDAVCAHLDFTRDDEDGDDRITVAVIGRPNVGKSSLINHILGENRLIVANEAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI------ 308
           +   ++ +      +DTAG+R+   +    E+  + R+   VE + + +++ +       
Sbjct: 216 IDTLVENKYGKFVFTDTAGLRKKGKVESGVERYSVLRSLAAVERSRVCVIMIDATVGFTE 275

Query: 309 --NSKKEISFPKNIDFIFIGTKSDLYST-----------YTEEYDHL-------ISSFTG 348
             +     +  +    I    K D                 E++  +       IS+ TG
Sbjct: 276 QDSKVAGYAHEQGKACIIAVNKWDAVEKDSYTMDAMRKQLEEDFSFMSYAPIVFISAKTG 335

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           + +++L   I  +      ++P  
Sbjct: 336 QRVDKLFETIHFVDIQNGTRVPTG 359


>gi|216263461|ref|ZP_03435456.1| ribosome-associated GTPase EngA [Borrelia afzelii ACA-1]
 gi|215980305|gb|EEC21126.1| ribosome-associated GTPase EngA [Borrelia afzelii ACA-1]
          Length = 433

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 11/139 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N+GKS+L N L+  +++IV+D PGTTRD +   L   G + +I DTAGIR 
Sbjct: 174 IKVGIIGKPNSGKSTLINYLSGNEISIVSDKPGTTRDFIKTKLTRNGKVFEIIDTAGIRR 233

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF---PKNIDFIFIGTK 328
               ++IVE   + R    ++  D++ LL ++     +  K+I+     K    I + +K
Sbjct: 234 RARVNEIVEYYSVNRALKVIDMVDIVFLLIDVKEELTSQDKKIAHYVTKKGKGIIIVFSK 293

Query: 329 SDLYSTYTEEYDHLISSFT 347
            DL       ++ L S   
Sbjct: 294 WDLVKESKGYFEALKSRVK 312



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 16/169 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I  +  G TRD++     +  +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDTKRSITENTYGVTRDLVEEVCKVGSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNI--DFIFIGTKSDLYS 333
            D + K  +++    +E  DLILL+ ++N       + I   +      I +  K D   
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDVNEILLEDYQIIERLRKYSNKVILVLNKVDTKD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                ++            S+    G+ +L + +K  +     +   +I
Sbjct: 126 KEFLAHEFHNLGFKRCFLVSAVHCRGIAKLRDFLKVEVGEANIEDEVNI 174


>gi|114332129|ref|YP_748351.1| GTP-binding protein EngA [Nitrosomonas eutropha C91]
 gi|122313190|sp|Q0AE46|DER_NITEC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|114309143|gb|ABI60386.1| small GTP-binding protein [Nitrosomonas eutropha C91]
          Length = 468

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 75/210 (35%), Gaps = 33/210 (15%)

Query: 195 DILFLKNDISSHISQGKLGEIIR------NGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
               L   I   +      E I           I I G  N GKS+L N L  ++  I  
Sbjct: 148 HGEHLGELIDFALEDYPYAEDIEAEPGQEKHPVIAIAGRPNVGKSTLINTLLGEERMIAF 207

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLL 305
           D PGTTRD + ID +       + DTAG+R +  +    EK  + +T   +E A++++L+
Sbjct: 208 DQPGTTRDSIYIDFEYGQRRYTLIDTAGLRRSGKVWETVEKFSVVKTLQSIEAANVVVLV 267

Query: 306 KEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------------H 341
            +  S                    +    K D    Y  +                  H
Sbjct: 268 LDAQSGISEQDAHIAGFILETGRALVIAINKWDGMDDYQRDTTKREFERKLAFLNFANLH 327

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPF 371
            IS+  G G++ L+  + +  +     +P 
Sbjct: 328 YISALYGNGVKALMPSVDAAYTAAMAHIPT 357



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 18/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           +V++G  N GKS+LFN L +   AIV DIPG TRD       L      + DT G     
Sbjct: 5   LVLVGRPNVGKSTLFNRLTRSRDAIVADIPGLTRDRHYGHGRLGLKPYLVVDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332
              +     ++T   V+ AD++L + +      +  K I+          I +  K++  
Sbjct: 65  KSGILHAMARQTLQAVDEADVVLFIVDGRQGLASQDKIIADQLRKTGRKIILVVNKAEGM 124

Query: 333 STYTEEYDHLI---------SSFTGEGLEELIN 356
              T   +            S+  GE L ELI+
Sbjct: 125 PYSTAAVEFHELGLGTPCVVSALHGEHLGELID 157


>gi|207342426|gb|EDZ70196.1| YMR023Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 214

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 92/214 (42%), Gaps = 31/214 (14%)

Query: 258 LTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           +   +++ GY V I DTAGIRE   D +E  GI R   +   +DL L + +     ++  
Sbjct: 1   IDAMINVNGYKVIICDTAGIREKSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKLLP 60

Query: 317 PK-----------NIDFIFIGTKSDLYST--------------YTEEYDHLISSFTGEGL 351
                        N   I +  KSDL S                ++     +S  T EG+
Sbjct: 61  EDILAHLSSKTFGNKRIIIVVNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGI 120

Query: 352 EELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY--LEMASLNEKDCGLDIIAE 407
           E LI+ + S   +  +    +  +   KR    L   V Y   E     +    + +  E
Sbjct: 121 ESLISTLTSNFESLSQSSADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATE 180

Query: 408 NLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440
           NLR AS  + KITG  + +E++LD +FSKFCIGK
Sbjct: 181 NLRYASDGIAKITGQAIGIEEILDSVFSKFCIGK 214


>gi|126695749|ref|YP_001090635.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9301]
 gi|166225836|sp|A3PBA9|DER_PROM0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|126542792|gb|ABO17034.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str.
           MIT 9301]
          Length = 457

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
               + I+G  N GKSSL N++  +  AIV+DI GTT D +   +       KI DTAGI
Sbjct: 175 EKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNHWKIIDTAGI 234

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIG 326
           R   ++    E  GI R F  ++ +D+ +L+ +      +  ++++     +    I + 
Sbjct: 235 RRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTDQDQKLAGRIEEQGRACIIVV 294

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
            K DL            SS   +  +EL +K+     +  K +  S  + +R        
Sbjct: 295 NKWDLVEK--------NSSTIYQVEKELRSKL--YFLHWSKMIFISALTGQRVDNIFEHA 344

Query: 387 VRYLEM 392
           +  +  
Sbjct: 345 LNAVNQ 350



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   +I DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD-- 330
           D     E   + FL +E A L LL+ + N   +  ++S  K     +   I    K +  
Sbjct: 66  DSEFLPEIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNKCEST 125

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINK-IKSILSNKFKKLPFSIPS 375
            L  +   E+        + +S+  G G  +L++  I  +  N  +     I  
Sbjct: 126 TLGISLASEFWKLGLGEPNPVSAIHGSGTGDLLDLVIGELPENNIQDDEEKIMM 179


>gi|91069954|gb|ABE10882.1| GTP-binding protein [uncultured Prochlorococcus marinus clone
           ASNC2259]
          Length = 457

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
               + I+G  N GKSSL N++  +  AIV+DI GTT D +   +       KI DTAGI
Sbjct: 175 EKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNHWKIIDTAGI 234

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIG 326
           R   ++    E  GI R F  ++ +D+ +L+ +      +  ++++     +    I + 
Sbjct: 235 RRKKNVKYGAEFFGINRAFKSIDRSDVCVLVIDAVDGVTDQDQKLAGRIEEQGRACIIVV 294

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
            K DL            SS   +  +EL +K+     +  K +  S  + +R        
Sbjct: 295 NKWDLVEK--------NSSTIYQVEKELRSKL--YFLHWSKMIFISALTGQRVDNIFEHA 344

Query: 387 VRYLEM 392
           +  +  
Sbjct: 345 LNAVNQ 350



 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 20/174 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   +I DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD-- 330
           D     E   + FL +E + L LL+ + N   +  ++S  K     +   I    K +  
Sbjct: 66  DSEFLPEIRTQVFLALEESSLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNKCEST 125

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINK-IKSILSNKFKKLPFSIPS 375
            L  +   E+          +S+  G G  +L++  I  +  N  +     I  
Sbjct: 126 TLGISLASEFWKLGLGEPIPVSAIHGSGTGDLLDLVICELPENNIQDDEEKIMM 179


>gi|306822736|ref|ZP_07456114.1| ribosome-associated GTPase EngA [Bifidobacterium dentium ATCC
           27679]
 gi|309800900|ref|ZP_07695032.1| ribosome biogenesis GTPase Der [Bifidobacterium dentium JCVIHMP022]
 gi|304554281|gb|EFM42190.1| ribosome-associated GTPase EngA [Bifidobacterium dentium ATCC
           27679]
 gi|308222436|gb|EFO78716.1| ribosome biogenesis GTPase Der [Bifidobacterium dentium JCVIHMP022]
          Length = 709

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 131/343 (38%), Gaps = 49/343 (14%)

Query: 92  VNGILEELAKMPNLRLANPGEFSR-RAFENGKIDLLEAES----LADLISSETE-MQRRL 145
           V  +L    +    R A+   FSR         D+    +    +  L+++  E  Q R 
Sbjct: 113 VRHVLIAAQRAYIAREASADSFSRGLGVVAEGRDITTVVAPDAEVRILLTAREEVRQARR 172

Query: 146 SMEGMSG----------ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           + +  SG          +  S    +      + +   +DL+FSE  DV      + + +
Sbjct: 173 AGQSASGVGTENVAARDKADSKVTNFTSAAEGVLTVDNSDLEFSETLDVLVRIVDDAIEE 232

Query: 196 I---LFLKNDISSHISQGKLGEI---------IRNGYK----IVILGHSNAGKSSLFNAL 239
                ++ N     + +G  G I         ++ G K    + ++G  N GKS+L N +
Sbjct: 233 QEYRQYVANLDDYELDEGDEGLIDGSSFVGGDLQAGPKPVGVLAVVGRPNVGKSTLVNRI 292

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +  A+V D PG TRD ++ D +  G   K+ DT G     + +E     +  + V+ A
Sbjct: 293 LGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIESAIASQAQMAVQLA 352

Query: 300 DLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYST--YTEEY-------DHL 342
           D ++L+ +    + S  E    +             K D   +   T E+        + 
Sbjct: 353 DAVVLVVDGQVGLTSTDERIVKMLRASGKPVTLAVNKVDDRESEYLTAEFWKMGLGEPYG 412

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           IS+  G G+ EL++     L    K   F  PSH R +  + +
Sbjct: 413 ISAMHGRGIGELLDVALESLKKAKKTSGFLTPSHLRRVALVGR 455



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 107/297 (36%), Gaps = 51/297 (17%)

Query: 126 LEAESLADLISSETEMQRRLS---------MEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
            + E +   I+S+ +M  +L+           G++     +            +     +
Sbjct: 332 ADVEGIESAIASQAQMAVQLADAVVLVVDGQVGLTSTDERIVKMLRAS-GKPVTLAVNKV 390

Query: 177 DFSEEEDVQNFSSKEVLNDILFL-------KNDISSHISQGKLGEIIRNGY-------KI 222
           D  E E +     K  L +   +         ++     +        +G+       ++
Sbjct: 391 DDRESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDVALESLKKAKKTSGFLTPSHLRRV 450

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279
            ++G  N GKSSL N LA ++ ++V D+ GTTRD +   + ++G      DTAGI+    
Sbjct: 451 ALVGRPNVGKSSLLNQLAHEERSVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGIKRRLH 510

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDL 331
                E     RT   +E ++L L+L + +        K            + +  K DL
Sbjct: 511 KLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRAIVLVFNKWDL 570

Query: 332 YSTYTE---------EYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              +           E+D         +S+ TG     L N ++  L +  K++P  
Sbjct: 571 MDEFDRQRMERLWKTEFDRVTWAQRVNLSAKTGWHTNRLANAMRGALQSWDKRIPTG 627


>gi|188024473|ref|ZP_02997121.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|209554037|ref|YP_002284819.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|238058980|sp|B5ZBM9|DER_UREU1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|188018583|gb|EDU56623.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|209541538|gb|ACI59767.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 442

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 11/125 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +  +K  I+G  N GKSSL N +  +   IV    G+TRD +  D         I DTAG
Sbjct: 172 QERFKFCIIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDSIDNDFSYHNKKYTIIDTAG 231

Query: 277 IRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
           +R      + VEK  + RT   +E + LILL+ + +            +++  NI  I +
Sbjct: 232 VRRKGKIVEAVEKYAVLRTQKAIERSQLILLVLDGSEPFKEQDEVVGGLAYDANIPTIIV 291

Query: 326 GTKSD 330
             K D
Sbjct: 292 VNKWD 296



 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 19/158 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSLFN +  +  +IV D PG TRD +    +       + DT GI  ++
Sbjct: 4   IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDVGNWLTRDFMLIDTGGIISSE 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS-----FPKNIDFIFIGTKSDL 331
           D  +    ++    +  A+ I+ L        N  K+I+       K+   I +  K + 
Sbjct: 64  DTYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAKDKKVILVVNKVES 123

Query: 332 YSTYTEEYD---------HLISSFTGEGLEELINKIKS 360
              Y  E +           IS+  G G+ +L++++  
Sbjct: 124 EKYYFNEGELYSFGFGKFFKISAEHGIGMGDLLDELVK 161


>gi|91069816|gb|ABE10748.1| GTP-binding protein [uncultured Prochlorococcus marinus clone
           ASNC1092]
          Length = 457

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
               + I+G  N GKSSL N++  +  AIV+DI GTT D +   +       KI DTAGI
Sbjct: 175 EKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNHWKIIDTAGI 234

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIG 326
           R   ++    E  GI R F  ++ +D+ +L+ +      +  ++++     +    I + 
Sbjct: 235 RRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTDQDQKLAGRIEEQGRACIIVV 294

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
            K DL            SS   +  +EL +K+     +  K +  S  + +R        
Sbjct: 295 NKWDLVEK--------NSSTIYQVEKELRSKL--YFLHWSKMIFISALTGQRVDNIFEHA 344

Query: 387 VRYLEM 392
           +  +  
Sbjct: 345 LNAVNQ 350



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   +I DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD-- 330
           D     +   + FL +E A L LL+ + N   +  ++S  K     +   I    K +  
Sbjct: 66  DSEFLPQIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNKCEST 125

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINK-IKSILSNKFKKLPFSIPS 375
            L  +   E+        + +S+  G G  +L++  I  +  N  +     I  
Sbjct: 126 TLGISLASEFWKLGLGEPNPVSAIHGSGTGDLLDLVIGELPENNIQDDEEKIMM 179


>gi|111017940|ref|YP_700912.1| GTP-binding protein EngA [Rhodococcus jostii RHA1]
 gi|110817470|gb|ABG92754.1| GTP-binding protein [Rhodococcus jostii RHA1]
          Length = 475

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 108/274 (39%), Gaps = 29/274 (10%)

Query: 128 AESLADLISSETEMQR-RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           A+++  ++ +         ++  +     +      +K+   R+  E    +S      +
Sbjct: 118 ADAILLVVDAVVGATATDEAVAKVLRRSKTPVLLVANKVDDGRTESEVAALWSLGLGQPH 177

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVA 245
             S         L +++ + + +     I   G + + ++G  N GKSSL N L+  + +
Sbjct: 178 SVSATHGRGTGDLLDEVLAALPETPREGIPGGGPRRVALVGKPNVGKSSLLNKLSGDERS 237

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLI 302
           +V ++ GTT D +   ++L G   +  DTAG+R+        E     RT   +E A++ 
Sbjct: 238 VVHNVAGTTVDPVDSIVELGGRPWRFVDTAGLRKRVSHASGAEFYASLRTKSAIEAAEVA 297

Query: 303 LLLKEINSK------KEISFPKNIDFIFIG--TKSDLYST-----YTEEYD--------- 340
           +LL + +        + +S   +     +    K DL           E D         
Sbjct: 298 ILLIDASEPISEQDLRVLSMVADAGRALVIAFNKWDLVDEDRRLQLDREVDRDLVRVPWA 357

Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               IS+ TG  +++L+  + + L +  K++P  
Sbjct: 358 QRVNISAQTGRAVQKLVPALDTALESWDKRIPTG 391



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 17/180 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +  G  GE       + ++G  N GKS+L N +  +  A+V DIPG TRD ++ + +  G
Sbjct: 26  LEDGGDGESHVPVPTLAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWSG 85

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPK 318
               + DT G       +++   ++  L ++ AD ILL+ +          +  ++    
Sbjct: 86  RRFMVQDTGGWEPDAKGLQQSVARQAELAMQTADAILLVVDAVVGATATDEAVAKVLRRS 145

Query: 319 NIDFIFIGTKSDLYSTYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
               + +  K D   T +E            H +S+  G G  +L++++ + L    ++ 
Sbjct: 146 KTPVLLVANKVDDGRTESEVAALWSLGLGQPHSVSATHGRGTGDLLDEVLAALPETPREG 205


>gi|226360071|ref|YP_002777849.1| GTP-binding protein EngA [Rhodococcus opacus B4]
 gi|226238556|dbj|BAH48904.1| GTP-binding protein EngA [Rhodococcus opacus B4]
          Length = 475

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 108/274 (39%), Gaps = 29/274 (10%)

Query: 128 AESLADLISSETEMQR-RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           A+++  ++ +         ++  +     +      +K+   R+  E    +S      +
Sbjct: 118 ADAILLVVDAVVGATATDEAVAKVLRRSKTPVLLVANKVDDGRTESEVAALWSLGLGQPH 177

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVA 245
             S         L +++ + + +     I   G + + ++G  N GKSSL N L+  + +
Sbjct: 178 SVSATHGRGTGDLLDEVLAALPETPREGIPGGGPRRVALVGKPNVGKSSLLNKLSGDERS 237

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLI 302
           +V ++ GTT D +   ++L G   +  DTAG+R+        E     RT   +E A++ 
Sbjct: 238 VVHNVAGTTVDPVDSIVELGGRPWRFVDTAGLRKRVSHASGAEFYASLRTKSAIEAAEVA 297

Query: 303 LLLKEINSK------KEISFPKNIDFIFIG--TKSDLYST-----YTEEYD--------- 340
           +LL + +        + +S   +     +    K DL           E D         
Sbjct: 298 ILLIDASEPISEQDLRVLSMVADAGRALVIAFNKWDLVDEDRRLQLDREVDRDLVRVPWA 357

Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               IS+ TG  +++L+  + + L +  K++P  
Sbjct: 358 QRVNISAQTGRAVQKLVPALDTALESWDKRIPTG 391



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 17/180 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +  G  GE       + ++G  N GKS+L N +  +  A+V DIPG TRD ++ + +  G
Sbjct: 26  LEDGGDGEAHVPVPTLAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWSG 85

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPK 318
               + DT G       +++   ++  L ++ AD ILL+ +          +  ++    
Sbjct: 86  RRFMVQDTGGWEPDAKGLQQSVARQAELAMQTADAILLVVDAVVGATATDEAVAKVLRRS 145

Query: 319 NIDFIFIGTKSDLYSTYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
               + +  K D   T +E            H +S+  G G  +L++++ + L    ++ 
Sbjct: 146 KTPVLLVANKVDDGRTESEVAALWSLGLGQPHSVSATHGRGTGDLLDEVLAALPETPREG 205


>gi|148377986|ref|YP_001256862.1| GTP-binding protein EngA [Mycoplasma agalactiae PG2]
 gi|238686669|sp|A5IZG5|DER_MYCAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|148292032|emb|CAL59424.1| GTP binding protein engA [Mycoplasma agalactiae PG2]
          Length = 436

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 36/197 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
           +K+ I+G  N+GKSSL NA+  ++ +IV+DI GTTRD +   ++L G+ ++I DTAGI  
Sbjct: 172 FKLSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDGVKSVVELRGHKIEIIDTAGITR 231

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFIG 326
             + DD VE   +KR    ++ +DL ++L  INS +E+          +   N   I   
Sbjct: 232 KSKIDDTVEHLALKRAMSSLDESDLSIVL--INSTRELAHFDARIIGYALENNKPIIICV 289

Query: 327 TKSDLYSTYTEEYDHLI------------------SSFTGEGLEELIN---KIKSILSNK 365
            K DL +   +  +                     S+ TG  +++LI+   K+K  L  +
Sbjct: 290 NKWDLINKTQDTMNEYRKKLKNRFHFVPWVPVEFISAKTGSRIDKLIDIVLKVKENLERE 349

Query: 366 FKKLPFSIPSHKRHLYH 382
            K    +    +  L  
Sbjct: 350 IKPSVLTNLIRESQLIQ 366



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 15/164 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  K  +I  D PG TRD L       G  + + DT GI+   
Sbjct: 6   IAIIGKPNVGKSTLFNRLVGKRSSITFDRPGVTRDRLYESFTWNGKEINVIDTGGIQIEK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
              + + + +  + +E A++++ + +  +           +        I +  K D  S
Sbjct: 66  KDFQDQILIQAKIAIEEANVVIFIVDGQAAITSDDKMIYSMLQKSGKPIIVVANKLDNIS 125

Query: 334 TYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            +         ++   IS+  G G+ +++++    L+     + 
Sbjct: 126 KFDYGWYSLGADHVFRISALHGNGIGDVLDQCLKYLNFDSDNVS 169


>gi|317180598|dbj|BAJ58384.1| GTP-binding protein EngA [Helicobacter pylori F32]
          Length = 459

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 25/180 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKSD 330
             I  +EK  ++RT   +E + ++LL+ ++++      ++IS   +      I I  K D
Sbjct: 261 GKILGIEKYALERTQKALEKSHIVLLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +     EE                    S      ++E+ +KI  +     K++P S+ +
Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSLLN 380



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 28/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERAYAFSSF-----------------GMPKSFNISVSHNRGISALIDAILNALNLN 170

Query: 394 SLNEKDCGLDII 405
            + E+D   DI+
Sbjct: 171 QIIEQDLDADIL 182


>gi|297538116|ref|YP_003673885.1| ribosome-associated GTPase EngA [Methylotenera sp. 301]
 gi|297257463|gb|ADI29308.1| ribosome-associated GTPase EngA [Methylotenera sp. 301]
          Length = 484

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 14/164 (8%)

Query: 203 ISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           + S     +  E+ + G    K+ I+G  N GKS+L NAL  ++  I  D PGTTRD ++
Sbjct: 160 LESFHEVEEEPELDQTGDRIPKVAIVGRPNVGKSTLVNALLGEERVIAFDEPGTTRDSIS 219

Query: 260 IDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK----- 311
           IDL+  G    + DTAG+R+   +   +EK  + +T   +E A++++L+ +         
Sbjct: 220 IDLEKNGKHYTLIDTAGVRKRGRVLEAIEKFSVIKTIQSIEEANVVILVVDAQEGITEQD 279

Query: 312 ---KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
                         +    K D       ++           L+
Sbjct: 280 AHVAAYILDAGRALVVAINKWDGLKEEERDWVKREIDRKLMFLD 323



 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 18/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           +V++G  N GKS+LFN L K   A+V D+PG TRD              + DT G    T
Sbjct: 5   VVLVGRPNVGKSTLFNRLTKSRDALVADLPGLTRDRHYGRGIGASQPYLVVDTGGFEPNT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
           D  + K    +T L ++ AD+I+ L +     + +++             +    K++  
Sbjct: 65  DSGILKAMAVQTLLAIDEADVIIFLVDGRQGATPQDMEIANRLRRSKCPVLLAVNKTEGM 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +      +           ISS  GEG++++I+          ++    
Sbjct: 125 NKAVVSAEFHELGLGDPLSISSAHGEGVKDIIDLALESFHEVEEEPELD 173


>gi|297626315|ref|YP_003688078.1| GTP binding protein [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922080|emb|CBL56648.1| GTP binding protein [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 449

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +  +       + ++G  N GKS+L N +  +  A+V D PG TRD ++ D +  G   
Sbjct: 4   AETAQAQSTRPVVAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYDANWAGREF 63

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNID 321
            + DT G     + +     ++  + ++ AD +L + +          +  ++       
Sbjct: 64  VLVDTGGWIAKAEGMSAHIAEQAEMAIQLADAVLFVVDAKVGLTDEDEAVVKVLRRSGKP 123

Query: 322 FIFIGTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
            +    K D      E               S+  G G  +L++ +  +L       P  
Sbjct: 124 VVLAANKVDDERVEAEASSLWQLGLGEPYPVSALHGRGSGDLLDALVKVLPKTSAVEPDE 183

Query: 373 IPSHKR 378
           +    R
Sbjct: 184 VGGPHR 189



 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 13/155 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L + +   + +    E    G  +++ I+G  N GKSSL N LA    ++V+D+ GTT 
Sbjct: 164 DLLDALVKVLPKTSAVEPDEVGGPHRVAIVGKPNVGKSSLLNRLASAQRSVVSDVSGTTV 223

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKK 312
           D +   + + G   ++ DTAGIR+        E     RT   +E +++ +++ + +   
Sbjct: 224 DPVDELVTIAGEPFRLIDTAGIRKRVKEASGSEYYAWLRTQAAIERSEVCVVVIDASEPI 283

Query: 313 EISFPK--------NIDFIFIGTKSDLYSTYTEEY 339
                K            +    K DL       Y
Sbjct: 284 SDQDLKILSSVEEAGRAMVVAFNKWDLTDEERHRY 318


>gi|163841322|ref|YP_001625727.1| GTP-binding protein EngA [Renibacterium salmoninarum ATCC 33209]
 gi|162954798|gb|ABY24313.1| GTP-binding protein [Renibacterium salmoninarum ATCC 33209]
          Length = 504

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD +  + +  G    + DT G     
Sbjct: 69  LAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYNAEWNGREFTVVDTGGWEFDA 128

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             + +   ++  + +E AD +L + +          S  ++        I +G K+D   
Sbjct: 129 KGIHQRVAEQAEMAIELADAVLFVVDATVGATAMDESMMKMLRRSKKPIILVGNKADDPR 188

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
           T ++              +S+  G G+ +L++KI  IL  
Sbjct: 189 TDSDVAALWGLGLGEPWSVSAQHGRGVADLLDKIMEILPE 228



 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 104/286 (36%), Gaps = 31/286 (10%)

Query: 115 RRAFENGKIDLLEAESLADLISSETEM-QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           +R  E  ++ +  A+++  ++ +         SM  M            +K    R+  +
Sbjct: 133 QRVAEQAEMAIELADAVLFVVDATVGATAMDESMMKMLRRSKKPIILVGNKADDPRTDSD 192

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI-IRNG--YKIVILGHSNA 230
               +          S +    +  L + I   + +    E   R G   +I ++G  N 
Sbjct: 193 VAALWGLGLGEPWSVSAQHGRGVADLLDKIMEILPEFSEVETTDRRGGPRRIALIGRPNV 252

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KE 287
           GKSSL N LA  +  +V  + GTTRD +   ++L     +  DTAGIR    + +     
Sbjct: 253 GKSSLLNKLAGSERVVVDPMAGTTRDPVDEFIELGDRTWRFVDTAGIRRRQHMAQGTDFY 312

Query: 288 GIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY 339
              RT   +E A++ ++L  ++           +++       +    K DL       Y
Sbjct: 313 ASLRTQSALEKAEVAVVLLAVDEVLSEQDVRILQLAIESGRALVLAFNKWDLLDDERRRY 372

Query: 340 ----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
                              IS+ TG   + L+  + + L +  +++
Sbjct: 373 LEREIEQDLAHVEWAPRVNISAKTGWHKDRLVPALDTALESWDRRI 418


>gi|83594414|ref|YP_428166.1| GTP-binding protein EngA [Rhodospirillum rubrum ATCC 11170]
 gi|83577328|gb|ABC23879.1| Small GTP-binding protein domain [Rhodospirillum rubrum ATCC 11170]
          Length = 500

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 22/204 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  + +AIV D+PG TRD       L   + ++ DTAG+ E
Sbjct: 2   FTVAIIGRPNVGKSTLFNRLCGRRLAIVHDMPGVTRDRREGKASLADLVFRVVDTAGLEE 61

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
              +++E    ++T   +  A + L+L +  +          EI     I  I +  K +
Sbjct: 62  AGPEVLEGRMRQQTDRALSEAHVALMLIDSRAGVTPLDAHFAEILRKAPIPVILVANKCE 121

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL- 380
             +     Y+           +S+  GEGL  L   +  I      +         R   
Sbjct: 122 GGAGKPGFYESYSMGLGDPVPLSAEHGEGLSLLYEALMPIYDAHMAQEAKDEADAVRAAF 181

Query: 381 ---YHLSQTVRYLEMASLNEKDCG 401
                 S    Y++ ASL   +  
Sbjct: 182 LETEAASAAKPYIDFASLEPDEVP 205



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 90/245 (36%), Gaps = 36/245 (14%)

Query: 159 GQWIDKLTHIRSFIEAD--LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
                      +   A   +DF+  E   +   ++  +D      D  S  +    GE  
Sbjct: 175 DAVRAAFLETEAASAAKPYIDFASLE--PDEVPEDDDSDPSQDPEDDFSVEAFDPRGER- 231

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
               ++ I+G  N GKS+L N L   D  +     G TRD + +D +  G   ++ DTAG
Sbjct: 232 --PIQMAIIGRPNTGKSTLINRLIGDDRLVTGPEAGVTRDAIEVDWEWGGRRFRLVDTAG 289

Query: 277 IRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFI 325
           +R     ++ +EK  +  T   +  A++ +L+ + N    +++++  +         +  
Sbjct: 290 LRRKARVENSLEKLMVADTLNAIRLAEVCVLMLDANMVMDRQDLTIARLVIDEGRALVIA 349

Query: 326 GTKSDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNKFK 367
             K D  +                           +S+  G GL  L++      +   +
Sbjct: 350 VNKWDACADRKAALQRLADRLETSLAQVRGVPFVTLSALEGHGLNRLMDAALEAHAKWNR 409

Query: 368 KLPFS 372
           ++P S
Sbjct: 410 RVPTS 414


>gi|54023981|ref|YP_118223.1| GTP-binding protein EngA [Nocardia farcinica IFM 10152]
 gi|54015489|dbj|BAD56859.1| putative GTP-binding protein [Nocardia farcinica IFM 10152]
          Length = 472

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 19/192 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +   + GE  +    + ++G  N GKS+L N +  +  A+V DIPG TRD ++ +    G
Sbjct: 23  LEGEQEGEAQQAMPTLAVVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYEATWAG 82

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK---- 318
               + DT G       +++   ++  L +  AD ILL+ +      +  E +  K    
Sbjct: 83  RRFLVQDTGGWEPDAKGLQQAVARQAELAMATADAILLVVDATVGATATDEAAVKKLRRS 142

Query: 319 NIDFIFIGTKSD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
            I  I +  K D          L+S    E   ++S+  G G  +L++ +  +L    ++
Sbjct: 143 QIPVILVANKVDDQRLEAEAAALWSLGLGE-PRMVSAAHGRGTGDLLDDVLEVLPETPRE 201

Query: 369 LPFSIPSHKRHL 380
                   +  L
Sbjct: 202 GTGGTGPRRVAL 213



 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 110/283 (38%), Gaps = 31/283 (10%)

Query: 125 LLEAESLADLISSETEMQR--RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           +  A+++  ++ +          +++ +      +     +K+   R   EA   +S   
Sbjct: 112 MATADAILLVVDATVGATATDEAAVKKLRRSQIPVIL-VANKVDDQRLEAEAAALWSLGL 170

Query: 183 DVQNFSSKEVLNDILFLKNDISSHI-SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
                 S         L +D+   +    + G       ++ ++G  N GKSSL N LA 
Sbjct: 171 GEPRMVSAAHGRGTGDLLDDVLEVLPETPREGTGGTGPRRVALVGKPNVGKSSLLNKLAG 230

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVEN 298
            + ++V D+ GTT D +   ++L G + K  DTAG+R         E     RT   +E 
Sbjct: 231 DERSVVHDVAGTTVDPVDSLVELGGKIWKFVDTAGLRRKVSNASGTEFYASLRTKSALEA 290

Query: 299 ADLILLLKEINSK------KEISFPKNIDFIFIG--TKSDLYST-----YTEEYD----- 340
           +++ ++L + +        + IS   +     +    K DL          +E D     
Sbjct: 291 SEVAIMLIDASQPITEQDLRVISLVADSGRALVLAFNKWDLVDEDRRLQLEKEVDRELVR 350

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                   IS+ TG  +++L+  +++ L +  K++     ++ 
Sbjct: 351 VPWAQRVNISAHTGRAVQKLVPAMETALESWDKRISTGRLNNW 393


>gi|297180284|gb|ADI16503.1| predicted GTPases [uncultured bacterium HF4000_05M23]
          Length = 440

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 29/180 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            ++ I G  NAGKS+LFNALA +D AIV+ +PGTTRD L    D EG  +   DTAG+R 
Sbjct: 178 IRVAIAGRPNAGKSALFNALAGEDRAIVSPVPGTTRDTLDSQFDFEGTRITFLDTAGLRR 237

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTK 328
             + +  +EK    RT   +E + + +L+ +                   +   + +  K
Sbjct: 238 RGKAEAGIEKYSAIRTIGAIERSYVSILVLDATEFVTAQDTHIGGYIDDASRAAVVVVNK 297

Query: 329 SDL------------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL                  +    +      S+ TG G+ +L+  I ++     K++P
Sbjct: 298 WDLAYDLKLDRAEAEEEVKNRFKFIPDVPVVFTSALTGRGVNKLLPTIINVYGEFTKQIP 357



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           I I+G  N GKS+LFN LA + +AIV+DIPGTTRD ++ID +   +   + DTAG+  R 
Sbjct: 6   IAIIGRPNVGKSTLFNRLAGRRIAIVSDIPGTTRDRVSIDAEWGRHRYLLVDTAGVEDRP 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDL 331
            + ++  +  K+  + +  AD I+   ++N           ++        +    K+D 
Sbjct: 66  HNALLWDDIKKQVEIALNQADGIIFTVDVNEGVTDADEDAADMVRRACRPVVVAANKTDS 125

Query: 332 YSTYTEEYD---------HLISSFTGEGLEELINKIKSILS 363
            +     YD         H IS++   G+ +L+  + + + 
Sbjct: 126 LAREDLIYDFYSLGLGEPHPISAYHDSGIGDLMEAMFAAMP 166


>gi|229587033|ref|YP_002845534.1| GTP-binding protein EngA [Rickettsia africae ESF-5]
 gi|259645884|sp|C3PPD1|DER_RICAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|228022083|gb|ACP53791.1| GTP-binding protein [Rickettsia africae ESF-5]
          Length = 447

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDEHP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLYS 333
           + + +  I++T   +  ADLI  + +       + K   SF +  N   I +  K +   
Sbjct: 66  NSMGERLIEQTTKAILEADLICFMVDGRSGILPDDKLLSSFVRKYNKPAILVVNKCEKAF 125

Query: 334 TYTEEY-------DHLISSFTGEGLEELINKIKSILSNK 365
            + +EY          IS+  G GL +L ++I + L  +
Sbjct: 126 DFDKEYYKLGFDSMIAISAEHGTGLIDLYDEIIAKLPEE 164



 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 84/204 (41%), Gaps = 35/204 (17%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           +  I ++I+    G+ ++    IV+ G  NAGKS+  NAL   +  +     G TR+ + 
Sbjct: 164 EESIKTNIADPIKGDCLQ----IVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIE 219

Query: 260 IDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK---KE 313
           ID   +   +K+ DTAG+R+   I    EK     T   ++ A+ ++L+ +  +    ++
Sbjct: 220 IDWQYKNNHIKLIDTAGLRKKSTITKSLEKLSASDTINSIKFANTVILMIDALAPLKQQD 279

Query: 314 ISFP-----KNIDFIFIGTKSDLYSTYTEEYDH--------------------LISSFTG 348
           ++       +    + +  K DL     +E                        IS+   
Sbjct: 280 LNIASHVVNEGRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQVKGIPVLFISAINK 339

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           + +E++++    I     KK+  S
Sbjct: 340 QNIEQVLDACLKIYKIWNKKITTS 363


>gi|91070353|gb|ABE11270.1| GTP-binding protein [uncultured Prochlorococcus marinus clone
           HF10-88F10]
          Length = 457

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
               + I+G  N GKSSL N++  +  AIV+DI GTT D +   +       KI DTAGI
Sbjct: 175 EKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNYWKIIDTAGI 234

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIG 326
           R   ++    E  GI R F  ++ +D+ +L+ +      +  ++++     +    I + 
Sbjct: 235 RRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTDQDQKLAGRIEEQGRACIIVV 294

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
            K D+            SS   +  +EL +K+     +  K +  S  + +R        
Sbjct: 295 NKWDIVEK--------NSSTIYQVEKELRSKL--YFLHWSKMIFISALTGQRVDNIFEHA 344

Query: 387 VRYLEM 392
           +  +  
Sbjct: 345 LNAVNQ 350



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L + + AIV D PG TRD    +    G   +I DT G+   D
Sbjct: 6   IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD-- 330
           D     E   + FL +E A L LL+ + N   +  ++S  K     +   I    K +  
Sbjct: 66  DSEFLPEIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNKCEST 125

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINK-IKSILSNKFKKLPFSIPS 375
            L  +   E+        + +S+  G G  +L++  I  +  N  +     I  
Sbjct: 126 NLGISLASEFWKLGLGEPNPVSAIHGSGTGDLLDLVIGELPENNIQDDEEKIMM 179


>gi|34581350|ref|ZP_00142830.1| conserved GTP-binding protein [Rickettsia sibirica 246]
 gi|28262735|gb|EAA26239.1| conserved GTP-binding protein [Rickettsia sibirica 246]
          Length = 447

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDEHP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLYS 333
           + + +  I++T   +  ADLI  + +       + K   SF +  N   I +  K +   
Sbjct: 66  NSMGERLIEQTTKAILEADLICFMVDGRSGILPDDKLLSSFVRKYNKPAILVVNKCEKAF 125

Query: 334 TYTEEY-------DHLISSFTGEGLEELINKIKSILSNK 365
            + +EY          IS+  G GL +L ++I + L  +
Sbjct: 126 DFDKEYYKLGFDSMIAISAEHGTGLIDLYDEIIAKLPEE 164



 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 85/204 (41%), Gaps = 35/204 (17%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           +  I ++I+    G+ ++    IV+ G  NAGKS+  NAL   +  +     G TR+ + 
Sbjct: 164 EESIKTNIADPIKGDCLQ----IVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIE 219

Query: 260 IDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK---KE 313
           ID   +   +K+ DTAG+R+     + +EK     T   ++ A+ ++L+ +  +    ++
Sbjct: 220 IDWQYKNNHIKLIDTAGLRKKSTITESLEKLSASDTINSIKFANTVILMIDALAPLKQQD 279

Query: 314 ISFP-----KNIDFIFIGTKSDLYSTYTEEYDH--------------------LISSFTG 348
           ++       +    + +  K DL     +E                        IS+   
Sbjct: 280 LNIASYVVNEGRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQVKGIPVLFISAINK 339

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           + +E++++    I     KK+  S
Sbjct: 340 QNIEQVLDACLKIYKIWNKKITTS 363


>gi|251771600|gb|EES52176.1| GTP-binding protein (EngA) [Leptospirillum ferrodiazotrophum]
          Length = 468

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 97/251 (38%), Gaps = 28/251 (11%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS--SKEVLNDILFLKNDISSHISQGK 211
           ++  Y   ++ L  + +     +D               + +     +  D+S    + +
Sbjct: 140 MADFYKYGVNPLVPVSALHGLGMDELLAPLAPYLPSAPDDPMEAHRLVLGDLSEEEIRER 199

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + + +    +I ++G  N GKS+L N L  ++  + + +PGTTRD +   +  +G   + 
Sbjct: 200 ILKRLEEPARIAVIGRPNVGKSTLINHLLGEERLVTSPLPGTTRDAIDTLVTWKGRPYRF 259

Query: 272 SDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFPKN-----I 320
            DTAGIR+     +  E  GI RT   +  A++ ++L    +  +  ++   +       
Sbjct: 260 VDTAGIRKRGKIAEASEMYGIIRTERTLIQAEIAVVLISTPDGLTDGDLRIIRQVIDARR 319

Query: 321 DFIFIGTKSDL---------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
             + +  K D                Y          +S  TG+ +  L   I ++ S  
Sbjct: 320 GLVLVFNKWDATDPKEAPDLTKLGERYPFLAFAPVIALSGLTGKNIPALFRHIDTVRSWY 379

Query: 366 FKKLPFSIPSH 376
           ++++  S  + 
Sbjct: 380 YRRIGTSALNR 390



 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 19/153 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+LFN L  ++ AI  D+PG TRD     +    Y  ++ DT GI   D
Sbjct: 14  VAILGRPNVGKSTLFNRLLGENRAITMDMPGVTRDRHYATVTQGPYAYRLVDTGGILFGD 73

Query: 282 DIVEKEGI-KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           D    E I K+    +E ADL++ L +             E         ++   KSD  
Sbjct: 74  DHPLGEAIRKQALFALEEADLLIYLFDAKDGYNPMDREVVEKIRASGKPAVYAVNKSDAP 133

Query: 333 S----------TYTEEYDHLISSFTGEGLEELI 355
           +           Y       +S+  G G++EL+
Sbjct: 134 TRESVLMADFYKYGVNPLVPVSALHGLGMDELL 166


>gi|167759231|ref|ZP_02431358.1| hypothetical protein CLOSCI_01578 [Clostridium scindens ATCC 35704]
 gi|167663105|gb|EDS07235.1| hypothetical protein CLOSCI_01578 [Clostridium scindens ATCC 35704]
          Length = 298

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 81/208 (38%), Gaps = 21/208 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   +   DT GI +  
Sbjct: 10  VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKN--IDFIFIGTKSD--- 330
           + + +  +      +   D++L L E         K      K      I +  K D   
Sbjct: 70  NKLGEYMVNVAERTLNEVDVVLWLVEPTTFIGAGEKHIAEQLKKVSTPVILVINKIDSVK 129

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                   +TY + YD      +S+  G   EEL+  +   L    +       + +   
Sbjct: 130 KEEILPAIATYKDIYDFAEIVPVSARNGNNTEELLKAVMKYLPYGPQFYDEDTITDQPER 189

Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAEN 408
             +++ +R   + SL E+      +A +
Sbjct: 190 QIVAELIREKALHSLQEEIPHGIAVAID 217


>gi|239623754|ref|ZP_04666785.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521785|gb|EEQ61651.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 442

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 71/170 (41%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN +A   ++IV D PG TRD +  D         + DT GI  +T
Sbjct: 6   VAIVGRPNVGKSTLFNVIAGDTISIVKDTPGVTRDRIYADCTWLDMNFTLIDTGGIEPDT 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            DI+  +  ++  + +  AD+I+ + ++            ++        +    K D  
Sbjct: 66  KDIILSQMREQAEIAISTADVIIFIVDVRQGLVDSDAKVADMLRKSRKPVVLAVNKVDSI 125

Query: 333 STYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           + +  +              +S+ +  G+ +L++++      +  +    
Sbjct: 126 AKFGNDVYEFYNLGIGEPVPVSAASRLGIGDLLDEVVKHFDGEKIEEEED 175



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 95/233 (40%), Gaps = 35/233 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L +++  H    K+ E   +  +I ++G  N GKSS+ N L  ++  IV+DI GTTRD 
Sbjct: 156 DLLDEVVKHFDGEKIEEEEDDRPRIAVVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDA 215

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILL-------LKE 307
           +  ++   G      DTAG+R    I    E+  I RT   VE AD++++       + E
Sbjct: 216 VDTEIVYNGTPYVFIDTAGLRRKSRIKEELERYSIIRTVTAVERADIVVVVIDAVEGVTE 275

Query: 308 INSK-KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            ++K   I+  +    I    K D                T + + E  NKIK  LS   
Sbjct: 276 QDAKIAGIAHERGKGVIVAVNKWDAIEK------------TDKTIYEYTNKIKETLSFMP 323

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
                 I +       L +    ++    N+           LR+A+  L +I
Sbjct: 324 YAEYIFISAATGQR--LPKLFEMIDAVRQNQN----------LRVATGVLNEI 364


>gi|99080832|ref|YP_612986.1| GTP-binding protein EngA [Ruegeria sp. TM1040]
 gi|123077693|sp|Q1GHZ2|DER_SILST RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|99037112|gb|ABF63724.1| Small GTP-binding protein domain [Ruegeria sp. TM1040]
          Length = 492

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 18/157 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + D+AG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDSAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ +E    + T   VE AD+ L L +  +          EI   K+   I    KS+
Sbjct: 63  ATDNSLEGRMRRLTERAVEMADVCLFLIDARAGVTPTDEVFAEILRKKSAHVILAANKSE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKI 358
             +      +           +S   GEGL +L +++
Sbjct: 123 GSAADAGVLEAYGLGLGEPIRMSGEHGEGLNDLYSEL 159



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 96/259 (37%), Gaps = 40/259 (15%)

Query: 150 MSGELSSLYGQWIDKLTHIRSFIE--ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI 207
           MSGE          +L  +    E  A+    E + V +    E  N    +       +
Sbjct: 144 MSGEHGEGLNDLYSELLPVSEKFEKLAEETAPETDVVLDEDENEAFNAGEEIAATPVPTL 203

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +           ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D  G 
Sbjct: 204 EK---------PLQVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLKIDWSGT 254

Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISF 316
            ++I DTAG+R+   +    EK  +      V+ A+++++L +     E        ++ 
Sbjct: 255 PMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAE 314

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYD------------------HLISSFTGEGLEELINKI 358
            +    +    K D+     E+                      +S+ TG GL+ L   I
Sbjct: 315 REGRAVVIAVNKWDIEDEKQEKLKALKEAFERLLPQLRGAPLVTVSAKTGRGLDRLHAAI 374

Query: 359 KSILSNKFKKLPFSIPSHK 377
                   +++P +  +  
Sbjct: 375 MKAHDVWNRRVPTAALNRW 393


>gi|78186288|ref|YP_374331.1| GTP-binding protein EngA [Chlorobium luteolum DSM 273]
 gi|123583448|sp|Q3B5U3|DER_PELLD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78166190|gb|ABB23288.1| Small GTP-binding protein domain [Chlorobium luteolum DSM 273]
          Length = 436

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 34/222 (15%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L ++I     +           ++ ++G  N GKSS  NAL   +  IV+ IPGTTRD
Sbjct: 154 ADLLDEILLTFPESDGPPEEDGAIRLAVIGRPNVGKSSFVNALLGSNRQIVSSIPGTTRD 213

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKE 313
            +      +     + DTAG+R+   I   +E     R+   +E  ++ +++ +     E
Sbjct: 214 AIDTRFTRKQQEFMLIDTAGLRKRTKISAGIEYYSSLRSERAIERCEVAIVMLDATPGIE 273

Query: 314 --------ISFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFT 347
                   I+  +    + +  K DL    ++                        S+ T
Sbjct: 274 KQDLKIINIAAERKRGVLLLVNKWDLVEKDSKTSKQYEESLRSHMGNLSYIPVIFTSALT 333

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
            + L   I+  K I  N+ +K+  S  +       L + +  
Sbjct: 334 KKNLYRAIDTAKEISQNRSRKISTSALNRF-----LEEALAA 370



 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + ++  AIV   PG TRD    +   +G   ++ DT G    D
Sbjct: 5   IALVGRPNVGKSTLFNRILREKAAIVDPTPGVTRDRHIAEGHWQGREFRLMDTGGYAPED 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPK-------NIDFIFIGTKSDL 331
            ++    +++T + +++AD+I+ L ++ S     ++   K       +        K++ 
Sbjct: 65  GVISTAMLEQTMMAIQDADIIIFLADVRSGVSYDDLELAKILKRDFSDKPIFLAVNKAES 124

Query: 332 YSTYTEEYDHLISSFT---------GEGLEELINKIKSILSNKFKKLPFS 372
                E    + + FT         G G+ +L+++I              
Sbjct: 125 PQLAIEAASFVSTGFTEPWAISARDGSGVADLLDEILLTFPESDGPPEED 174


>gi|172037536|ref|YP_001804037.1| GTP-binding protein Era [Cyanothece sp. ATCC 51142]
 gi|254783295|sp|B1WT49|ERA_CYAA5 RecName: Full=GTPase Era
 gi|171698990|gb|ACB51971.1| GTP-binding protein [Cyanothece sp. ATCC 51142]
          Length = 314

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 24/210 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+L N L  + +AI + +  TTR+ L   L  +   +   D
Sbjct: 18  EGFKSGF-VGIIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLQGILTTDKAQIIFVD 76

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFI 325
           T GI +    + K  +K     + + D+ILL+ + + K        I   K  N   I  
Sbjct: 77  TPGIHKPHHTLGKIIVKNAKTAINSVDIILLVVDSSVKSGGGDRYIIDLLKTVNQPVILG 136

Query: 326 GTKSDLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             KSD  +   +E D                 S+ TG+G+E L N +   L       P 
Sbjct: 137 LNKSDQQTEKYQEIDESYANLIQDHNWPMIKFSALTGDGVETLQNTLIEQLEPGPYYYPP 196

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            + + +   + +++ +R  ++  L  ++  
Sbjct: 197 DLITDQPERFIMAELIRE-QILQLTRQEVP 225


>gi|197294798|ref|YP_001799339.1| GTP-binding protein EngA [Candidatus Phytoplasma australiense]
 gi|171854125|emb|CAM12114.1| GTP-binding protein [Candidatus Phytoplasma australiense]
          Length = 439

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 19/174 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSLFN L  K  AI     G TRD +    +       + DT GI   
Sbjct: 3   KIAIVGRPNVGKSSLFNRLIGKRQAITHHKEGITRDRIYAQANWLTRTFDVIDTGGIEFQ 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
                ++  ++  L ++ AD+I+ + +  +          +I +      + +  K D +
Sbjct: 63  AIPFLEQIKQQAQLAIDEADVIIFVVDGKTGLTQSDHYLAKILYQTKKKVLLVVNKIDNH 122

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
              +  Y+           +S+  G G+ +L++KI  I    F K       ++
Sbjct: 123 DLLSNIYEFYALGFDAPLPVSALHGVGVGDLLDKI--IFHLDFSKPSLQATENE 174



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 77/212 (36%), Gaps = 34/212 (16%)

Query: 198 FLKNDISSHISQGK-----LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
            L + I  H+   K           N  K  I+G  N GKS+L N+L      +V+DI G
Sbjct: 152 DLLDKIIFHLDFSKPSLQATENETDNVIKFCIIGRPNVGKSTLTNSLLFSQRMVVSDIAG 211

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEIN 309
           TT D +      EG   +I DTAGI++   I E   K  + R    + N D+  L+ +  
Sbjct: 212 TTTDAIDTFFINEGQKYQIIDTAGIKKRGKIYEQEDKYSVLRALQTLANCDIACLVIDAQ 271

Query: 310 SK--------KEISFPKNIDFIFIGTKSDLYST------------------YTEEYDHLI 343
           +           +    +  +I I  K DL S                     +     +
Sbjct: 272 AGILEQDKNIAGLILEHHKSYIIIVNKWDLISKETNTMKKFEDQIRQEFKFLPDAPIIFL 331

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           S+F    L+ L   +K +  N        + +
Sbjct: 332 SAFKKNRLQSLFPILKKVFQNYQSNFSTHLLN 363


>gi|326773386|ref|ZP_08232669.1| ribosome-associated GTPase EngA [Actinomyces viscosus C505]
 gi|326636616|gb|EGE37519.1| ribosome-associated GTPase EngA [Actinomyces viscosus C505]
          Length = 719

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 90/209 (43%), Gaps = 31/209 (14%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           EVL+ ++ +  ++S+  +    G++ R    I ++G  N GKSSL N++A ++  +V + 
Sbjct: 433 EVLDAVMEVLPEVSAVATAAPEGDLHR----IALVGRPNVGKSSLLNSIAGQERVVVNET 488

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKE 307
            GTTRD +   ++L+G      DTAGIR   +     +   + RT   ++ A++ ++L +
Sbjct: 489 AGTTRDPVDEIIELDGRQWVFVDTAGIRRRVKQSRGADYYAVLRTQGAIDKAEVAVVLLD 548

Query: 308 INSK--------KEISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLISSF------ 346
            +           + +       + +  K DL     +       E+D    S+      
Sbjct: 549 ASEPISEQDVRVVQQAVDAGRALVLVNNKWDLVDEERQKMLLWEVEHDLAHVSWAPHINL 608

Query: 347 ---TGEGLEELINKIKSILSNKFKKLPFS 372
              TG     L+  + + L     ++P  
Sbjct: 609 AARTGWHTNRLVRALDAALEGWTTRVPTG 637



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 20/203 (9%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQG--KLGEIIRNGYKI-VILGHSNAGKSSLFNA 238
           ED++  + +  L D    + D++   + G    G+ +  G  +  ++G  N GKS+L N 
Sbjct: 242 EDLRAQAMRAGLADYELDEEDLALLEADGGLPTGDSVEPGLPVLAVVGRPNVGKSTLVNR 301

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           +  +  A+V D PG TRD ++   +  G    I DT G       ++     +  + VE 
Sbjct: 302 VLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVDVAGLDAAVATQAEVAVEM 361

Query: 299 ADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEY---------DH 341
           AD +LL+ +       +  +            +    K D  +   +             
Sbjct: 362 ADAVLLVVDAQVGITETDARVVRMLRRSGKPVVLAANKVDSPAQEGDAATLWNLGLGEPF 421

Query: 342 LISSFTGEGLEELINKIKSILSN 364
            +S+  G G  E+++ +  +L  
Sbjct: 422 PVSALHGRGSGEVLDAVMEVLPE 444


>gi|30248179|ref|NP_840249.1| GTP-binding protein EngA [Nitrosomonas europaea ATCC 19718]
 gi|37999533|sp|Q82XU6|DER_NITEU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|30180064|emb|CAD84064.1| GTP-binding protein (HSR1-related):AAA ATPase superfamily
           [Nitrosomonas europaea ATCC 19718]
          Length = 467

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 11/131 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I G  N GKS+L N L  ++  I  D PGTTRD + +D +       + DTAG+R + 
Sbjct: 181 IAIAGRPNVGKSTLINTLLGEERVIAFDQPGTTRDSIYVDFEYGQRSYTLIDTAGLRRSG 240

Query: 282 DIV---EKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTKSD 330
            +    EK  + +T   +E A++++L+ +      +    I+          +    K D
Sbjct: 241 KVWETVEKFSVVKTLQSIEAANVVILVLDAHHEISDQDAHIAGFILETGRSLVVAINKWD 300

Query: 331 LYSTYTEEYDH 341
               Y  E   
Sbjct: 301 GLDDYQREIIK 311



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 18/153 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           +V++G  N GKS+LFN L +   AIV DIPG TRD       L      + DT G     
Sbjct: 5   LVLVGRPNVGKSTLFNRLTRSRDAIVADIPGLTRDRHYGHGRLGLKPYLVVDTGGFEPVV 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
              +     K+T   V+ AD++L + +             E         I +  K++  
Sbjct: 65  KSGILHAMAKQTLQAVDEADIVLFIVDGRQGLAAQDKIIAEQLRKTGQKIILVVNKTEGM 124

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELIN 356
            YS+ T E+          +S+  G+ L ELI+
Sbjct: 125 PYSSVTAEFHELGLGTPCAVSALHGDHLGELID 157


>gi|75763043|ref|ZP_00742832.1| GTP-binding protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74489475|gb|EAO52902.1| GTP-binding protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 251

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++FN +  + V+IV DIPG TRD +    +   +   I DT GI   D
Sbjct: 6   IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
           +    +  ++  + ++ AD+I+ +      + +  E    I +      +    K D   
Sbjct: 66  EPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
             ++ YD           IS   G GL +L+++  +   
Sbjct: 126 MRSDIYDFYSLGFGEPFPISGTHGLGLGDLLDEAANHFP 164



 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++ ++H  + +         +  ++G  N GKSSL +AL  ++  IV++I G TRD 
Sbjct: 154 DLLDEAANHFPKIEEEAYDDETIRFSLIGRPNVGKSSLVHALLGQERVIVSNIAGPTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
           +      +     I DTAG+R  D  ++ +
Sbjct: 214 VDTPYSTDDQDYVIIDTAGMRTKDKYMQVQ 243


>gi|110834717|ref|YP_693576.1| GTP-binding protein [Alcanivorax borkumensis SK2]
 gi|123149362|sp|Q0VNE4|DER_ALCBS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|110647828|emb|CAL17304.1| GTP-binding protein, putative [Alcanivorax borkumensis SK2]
          Length = 471

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 17/156 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD    D  L GYL  + DT GI E D
Sbjct: 7   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGDGQLGGYLYTVVDTGGIGEND 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN--------IDFIFIGTKSDLYS 333
           D ++     ++   V  AD++L + +  +    +  +              I  K+D   
Sbjct: 67  DGIDVPMTSQSLQAVGEADVVLFMVDGRAGLTAADEQIASELRKLPKPTYLIVNKTDGVD 126

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKS 360
             +   +           I++  G G+  +I  I  
Sbjct: 127 ADSAMSEFFALGLTEVLPIAAAHGRGVTSMIEHILE 162



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 82/200 (41%), Gaps = 30/200 (15%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
            H +  K GE   +  ++ +LG  N GKS+L N +  ++  +V D  GTTRD + +  + 
Sbjct: 174 EHRTSKKPGE---DSIRVAVLGRPNVGKSTLINRMLGEERVVVFDHAGTTRDSIEVPFER 230

Query: 265 EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEI---- 314
            G    + DTAG+R    +    EK  + +    +E A +++++ +     + +++    
Sbjct: 231 MGRAYTLIDTAGVRRRGKVFEMVEKFSVIKALQAMEAAQVVVVVIDAREGITDQDLHLLG 290

Query: 315 -SFPKNIDFIFIGTKSD-LYSTYTEEY---------------DHLISSFTGEGLEELINK 357
            +       +    K D L + + E                    IS+  G G+ +L   
Sbjct: 291 YALDSGRALMIAVNKWDGLEADHKERVRVNLGRRLEFAPWVKIKFISALHGTGVGDLWGM 350

Query: 358 IKSILSNKFKKLPFSIPSHK 377
           ++    + F K+  +  +  
Sbjct: 351 VEQAWDSAFIKIGTNELTRM 370


>gi|312114899|ref|YP_004012495.1| ribosome-associated GTPase EngA [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220028|gb|ADP71396.1| ribosome-associated GTPase EngA [Rhodomicrobium vannielii ATCC
           17100]
          Length = 464

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 84/200 (42%), Gaps = 18/200 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y + I+G  N GKS+LFN LA + +A+V D+PG TRD     + +    V ++DTAG+ +
Sbjct: 3   YTVAIIGRPNVGKSTLFNRLAGRRLALVDDLPGLTRDRKETQIRINRRDVVLTDTAGLED 62

Query: 280 TDDI-VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            +   +     +++   +  +DLIL + +  ++         ++       FI +  KS+
Sbjct: 63  AEPGSIAARMREQSEQAIAESDLILFVIDARAELTSVDRGIADLVRSSGKPFILVANKSE 122

Query: 331 LYSTYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
             ++    Y            +S+    GL +L+ ++ + L                 L 
Sbjct: 123 SRASDAGYYGSYELGLGEPLPVSAEHNMGLGDLMAEVTNRLDEIATARGDEPEPEDDELT 182

Query: 382 HLSQTVRYLEMASLNEKDCG 401
                 R L++A     + G
Sbjct: 183 EEQARARPLKLAIAGRPNAG 202



 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 95/263 (36%), Gaps = 27/263 (10%)

Query: 99  LAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ---RRLS-MEGMSGEL 154
           L     L  A PG  + R  E  +  + E++ +  +I +  E+    R ++ +   SG+ 
Sbjct: 54  LTDTAGLEDAEPGSIAARMREQSEQAIAESDLILFVIDARAELTSVDRGIADLVRSSGKP 113

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
             L     +       +  +      E    +      L D++    +    I+  +  E
Sbjct: 114 FILVANKSESRASDAGYYGSYELGLGEPLPVSAEHNMGLGDLMAEVTNRLDEIATARGDE 173

Query: 215 IIRN------------GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
                             K+ I G  NAGKS+L NAL  ++  I     G TRD +  D 
Sbjct: 174 PEPEDDELTEEQARARPLKLAIAGRPNAGKSTLVNALLGEERMITGPEAGLTRDAIAADF 233

Query: 263 DLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK-------- 311
              G  V++ DTAG+R    I    E   +      +  A++++LL +  S         
Sbjct: 234 QWRGRKVRLYDTAGLRRKARINVRSETLAVGDALRAIRFAEIVVLLLDAQSPLDKQDLTI 293

Query: 312 KEISFPKNIDFIFIGTKSDLYST 334
            ++   +    +F   K DL   
Sbjct: 294 ADLVEREGRGLVFAVNKWDLVPE 316


>gi|307294125|ref|ZP_07573969.1| ribosome-associated GTPase EngA [Sphingobium chlorophenolicum L-1]
 gi|306880276|gb|EFN11493.1| ribosome-associated GTPase EngA [Sphingobium chlorophenolicum L-1]
          Length = 456

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD       L G    I DTAG  + D
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRREGQASLLGVDFTIIDTAGYEDED 64

Query: 282 DIVE-KEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLY 332
                     +T   VENAD+ L + +  +      +EI+      +   + +  K++  
Sbjct: 65  PQTLPGRMRMQTQAAVENADVALFVVDARAGITPLDEEIARWLREGDAPVVLMANKAEGR 124

Query: 333 S---------TYTEEYDHLISSFTGEGLEELINKI 358
           +         +         S+  G+GL +L   +
Sbjct: 125 AGDDGVMEAFSLGLGDPVPFSAEHGQGLADLFQAL 159



 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 36/199 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL---EG--YLVKISDT 274
            K+ I+G  NAGKS+L N L  ++  +     G TRD + +D      +G    V++ DT
Sbjct: 185 LKLAIVGRPNAGKSTLINRLLGENRLLTGPEAGITRDSIAVDWQWTSPDGQERPVRLIDT 244

Query: 275 AGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFI 323
           AG+R+     D +EK  +      V  A++++LL +     E            +    +
Sbjct: 245 AGMRKRAKVQDKLEKLAVSDGLNAVNFAEVVVLLLDSTRGLEAQDLRIADKVLEEGRALV 304

Query: 324 FIGTKSDLY------------------STYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
               K D                    +         +S  TG+GL++LI       +  
Sbjct: 305 VALNKWDTVEHGSALYQGIKQALSDGLAQIRGVPIMTVSGATGKGLDDLIRVAFETRTAW 364

Query: 366 FKKLPFSIPSH--KRHLYH 382
            +++   I +   +R L  
Sbjct: 365 SQRVSTGILNRWFERALEA 383


>gi|218887353|ref|YP_002436674.1| GTP-binding protein EngA [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758307|gb|ACL09206.1| small GTP-binding protein [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 506

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 76/198 (38%), Gaps = 11/198 (5%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +    G    +    + ++       E   +  + +D  +  + E   D      +    
Sbjct: 170 VSAAHGHNVRVLEDEMREMLPDEPEEEGAANGEDGDDADDPYASEGEGDANADGAESGES 229

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ K         ++ +LG  NAGKSSL NAL  +   IV+D+ GTTRD + +  +   
Sbjct: 230 AAEPKGPPYDPTHLRLAMLGRPNAGKSSLVNALTGQQRMIVSDMAGTTRDSVDVSFESGD 289

Query: 267 YLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEIS 315
             +   DTAG+R      D VE+  +  +      A + LL+ +             ++ 
Sbjct: 290 KTITFVDTAGVRRRSRITDSVERYSVNASLKSTTKAHVTLLVLDALQGVTQQDKRLVDLL 349

Query: 316 FPKNIDFIFIGTKSDLYS 333
             +   F+ +  K DL  
Sbjct: 350 DERKTPFMVLVNKIDLVP 367



 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 29/181 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR- 278
           KI ++G  N GKS+LFN L + + AI  D PG TRD +   +   G     I DT GI  
Sbjct: 19  KIALVGRPNVGKSTLFNRLIRANRAITHDRPGVTRDRMEGQVRSRGKQTFAIVDTGGITL 78

Query: 279 ----------ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNI 320
                     E     E E +++    +  A  I L+ +                     
Sbjct: 79  DAHAAVAEGPEGIRGFEAEILRQAEAAMAEAAGICLVVDGRDGLTPFDEHLAAHLRRAGK 138

Query: 321 DFIFIGTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
             + +  K D      E               S+  G  +  L ++++ +L ++ ++   
Sbjct: 139 PVLVVVNKVDGVEREDEMLAEFHALGFPLLPVSAAHGHNVRVLEDEMREMLPDEPEEEGA 198

Query: 372 S 372
           +
Sbjct: 199 A 199


>gi|87118473|ref|ZP_01074372.1| GTPase EngA [Marinomonas sp. MED121]
 gi|86166107|gb|EAQ67373.1| GTPase EngA [Marinomonas sp. MED121]
          Length = 454

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 27/174 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +I   G +I ++G  N GKS+L N +  +D  +V D+PGTTRD + I          + D
Sbjct: 174 DIESKGTRIGVIGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYIRNEKEYTLID 233

Query: 274 TAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDF 322
           TAG+R      + VEK  I +T   +++A++++++ + +                     
Sbjct: 234 TAGVRRRKHIKEAVEKFSIVKTLKAIQDANVVIVVIDGHEDLVEQDLHMIGYVIDAGRGL 293

Query: 323 IFIGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKS 360
           +    K D    Y++E                  H IS+  G  +  L + I  
Sbjct: 294 VIAVNKWDGLDQYSKERIKTEVERRLGFVPYAKVHYISALHGTAVGNLYDTIDE 347



 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD    D  +  +   + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNQLTRSRDALVADYPGLTRDRKYGDGRIGEHEFIVIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEI----SFPKNIDFIFIGTKSDLYS 333
             ++++  +++ L +E AD +L L +    +N   E+        N     +  K+D  +
Sbjct: 65  MGIDEKMARQSLLAIEEADTVLFLVDGRHGLNPADEMIANHLRRSNKPTFMVVNKTDGIN 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELIN 356
                 D         H I++  G+G+ +LI+
Sbjct: 125 EDVALADFYSIGLGDLHPIAASHGKGVHKLID 156


>gi|87306807|ref|ZP_01088953.1| probable GTP-binding protein [Blastopirellula marina DSM 3645]
 gi|87290180|gb|EAQ82068.1| probable GTP-binding protein [Blastopirellula marina DSM 3645]
          Length = 473

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L N I+  +   + GE       KI ++G  N GKS+  N LA+ +  IV+++ GTTRD
Sbjct: 155 DLLNVIADRLPDAEEGEQTGEPEMKIAVVGRRNVGKSTFVNTLARAERMIVSEVAGTTRD 214

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---- 309
            + I  +L+G      DT G+R    +    +     R    +  AD++L+  + +    
Sbjct: 215 SVDIRFELDGKSFTAIDTPGLRRRVSVKTDVDFYSTHRAERSIRRADVVLMFFDASQQIS 274

Query: 310 --SKKEISFPKNI--DFIFIGTKSDLY 332
              K+ I++        +F+  K DLY
Sbjct: 275 KVDKQLIAYIAENYKPVVFVVNKWDLY 301



 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IVI+G  N GKSSLFN LA + +AIV ++ G TRD +T  +       +I DT GI   
Sbjct: 5   QIVIVGRPNVGKSSLFNWLAGRRLAIVDNVAGVTRDRMTYLMQWRERYFEIVDTGGIGVN 64

Query: 281 D-DIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPK---NIDFIFIGTK--- 328
           D D +  E  ++  + +++ADLIL + +         +E++      N   + +  K   
Sbjct: 65  DVDDLTDEIEQQIAIAIDSADLILFVVDTREGILPLDQEVARRLRHVNKPIVLVANKTDE 124

Query: 329 ------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                 +D +          +S+      ++L+N I   L +  +      P  K
Sbjct: 125 QHMDHDADQFYQLGRGKLVPVSTLQNRNKDDLLNVIADRLPDAEEGEQTGEPEMK 179


>gi|317484901|ref|ZP_07943790.1| ribosome-associated GTPase EngA [Bilophila wadsworthia 3_1_6]
 gi|316923839|gb|EFV45036.1| ribosome-associated GTPase EngA [Bilophila wadsworthia 3_1_6]
          Length = 452

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 87/233 (37%), Gaps = 27/233 (11%)

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQW---IDKLTHIRSFIEADLDFSEEED 183
           EAE L    ++  E      +      L          + +       +   +D  E ED
Sbjct: 80  EAEILQQTQAAMDEASVFCLVVDGRDGLMPFDEHLASFVRRAGKPTLLVVNKVDGMEHED 139

Query: 184 VQNFSS-----------KEVLNDILFLKNDISSHI--SQGKLGEIIRNGYKIVILGHSNA 230
                             E  ++I  L+ ++   +            N  ++ +LG  NA
Sbjct: 140 TMLAEFHALGFPILALSAEHGHNIRALEEEMVDLLPVEDPDAEAKPENVLRLAMLGRPNA 199

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKE 287
           GKSSL NA+  +D  IV+D+ GTTRD + I    +G   +  DTAG+R      D VE+ 
Sbjct: 200 GKSSLVNAMIGEDRMIVSDVAGTTRDSVDIPFVSDGRACEFVDTAGVRRRTRITDTVERF 259

Query: 288 GIKRTFLEVENADLILLLKE------INSKKEISF--PKNIDFIFIGTKSDLY 332
            +  +      AD+ L + +         K+ I     +   F+ +  K DL 
Sbjct: 260 SVNSSLKTTTKADVTLYVIDALEGVTAQDKRLIDLLDERKTPFMILVNKIDLV 312



 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 64/180 (35%), Gaps = 29/180 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIR- 278
           KI +LG  N GKS+LFN L + + AI  D PG TRD +   +    G    + DT G+  
Sbjct: 4   KIALLGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGVVRSRSGRSFTLIDTGGVTL 63

Query: 279 ----------ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNI 320
                     E     E E +++T   ++ A +  L+ +                     
Sbjct: 64  DSHHSVADGPEGLRGFEAEILQQTQAAMDEASVFCLVVDGRDGLMPFDEHLASFVRRAGK 123

Query: 321 DFIFIGTKSD--------LYSTYTEEYDH-LISSFTGEGLEELINKIKSILSNKFKKLPF 371
             + +  K D        L   +   +    +S+  G  +  L  ++  +L  +      
Sbjct: 124 PTLLVVNKVDGMEHEDTMLAEFHALGFPILALSAEHGHNIRALEEEMVDLLPVEDPDAEA 183


>gi|220917392|ref|YP_002492696.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955246|gb|ACL65630.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 465

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 11/152 (7%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +    E      ++ I+G  N GKS+  NAL  ++  +V+D+PGTTRD +   +  +G 
Sbjct: 184 QEVSEAERPVGDIRLAIVGRPNVGKSTFVNALLGEERFVVSDVPGTTRDAIDSLVAHKGR 243

Query: 268 LVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISF 316
              ++DTAGIR    I   VE   + R    ++ A+++  L +              +  
Sbjct: 244 RFVVTDTAGIRRKRSIAQKVESFSVVRAMKAMDQAEVVACLLDATEAGVEQDARLLGLVA 303

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
            K    + +  K D+        D      T 
Sbjct: 304 EKGKALVIVVNKWDIAEREGATQDWYRKELTK 335



 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 20/157 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN LA + VAIV D+PG TRD    D+  EG  V + DT G   E+
Sbjct: 8   VALVGRPNVGKSTLFNRLAGRRVAIVEDVPGVTRDRNYADVIWEGRAVSVVDTGGFEPES 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D +  +  ++  L V+ A  ++L+ +             ++             K D  
Sbjct: 68  RDRLMSQVREQAQLAVDEASAVVLVVDGRDGLTALDRNVADLLRRAGKPLFVAVNKVDTA 127

Query: 331 -------LYSTYTEEYD--HLISSFTGEGLEELINKI 358
                  L   Y   +   H +S+  G G+  L++ I
Sbjct: 128 RTEEDVPLAEFYGLGFGEVHAVSAEHGRGVSGLVDAI 164


>gi|319408190|emb|CBI81843.1| GTP-binding protein [Bartonella schoenbuchensis R1]
          Length = 469

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS+LFN L  + +A+V + PG TRD    +  L+     + DTAG+ +
Sbjct: 3   LTIAIVGRPNVGKSTLFNRLVGQKLALVDNKPGVTRDRRVHEARLQDLRFNVIDTAGLED 62

Query: 280 TDD-IVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             D  +E     +T   ++ ADLIL + +  S           +        + I  KS+
Sbjct: 63  ASDQTLEGRMFFQTKAAIKEADLILFVLDAKSGVTPSDCSFASLVRKSGKPIVLIVNKSE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
                   Y+           IS+  G G  +L + I + +
Sbjct: 123 SKMAIEGGYEAWSLGLGEPCAISAEHGLGFSDLRDAIVNAV 163



 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 88/246 (35%), Gaps = 42/246 (17%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
           +    D + +     +A     EEE          L   + L ND        + G +  
Sbjct: 152 FSDLRDAIVNAVGKDKAFEQVKEEECA--------LTRCVSLDNDFDDL---EERGFVYD 200

Query: 218 N--GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
                +I I G  N GKS+L N++  +D  +     G TRD +++D +  G   K+ DTA
Sbjct: 201 ESKPIRIAIAGRPNTGKSTLINSMLGQDRLLTGPEAGITRDSISVDWEWRGRCFKLFDTA 260

Query: 276 GIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIF 324
           G+R    +    EK  +  T   +  +++++++ +     E        +   +    I 
Sbjct: 261 GLRRKLKVQEKLEKLSVADTLRAIRFSEVVVIVFDATMPFEKQDLQIADLVIREGRVPII 320

Query: 325 IGTKSDLYSTYTEEYDHLISSFT------------------GEGLEELINKIKSILSNKF 366
              K DL     E    L                       G+G+++L+  I  I     
Sbjct: 321 AFNKWDLIENCQEVLADLHEKCARLLPQVRGLRAVPLSGQYGKGIDKLMENIMMIHRVWN 380

Query: 367 KKLPFS 372
           +++P  
Sbjct: 381 RRIPTG 386


>gi|213649667|ref|ZP_03379720.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 136

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 50/89 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG      DT GI  T+
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
           D VE    +++ L +E AD++L + +  +
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVDARA 93


>gi|162447731|ref|YP_001620863.1| EngA family GTP-binding protein [Acholeplasma laidlawii PG-8A]
 gi|161985838|gb|ABX81487.1| GTP-binding protein, EngA family [Acholeplasma laidlawii PG-8A]
          Length = 438

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 20/190 (10%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
             +  D +    +F    L F    D    SS   +     L   +S  + + K+ E  +
Sbjct: 117 VNKIDDIVHAHNAFEFYALGFG---DPIAVSSHHGIGVGDLLDKTLSYMVEEEKVHE--K 171

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
                 +LG  N GKSSL NA+  ++  IV+DI GTT D +      +     I DTAGI
Sbjct: 172 GIISFSVLGRPNVGKSSLVNAIIGEERVIVSDISGTTTDAIDTTFTKDKQKYTIIDTAGI 231

Query: 278 RETDDIVE---KEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFIF 324
           ++   + E   K  + R    +E +D+ LL+ +  +  +          + + +    I 
Sbjct: 232 KKRGKVYENLDKYSVLRAMTALERSDIALLVLDATAGIQEQDGHVAGYIMQYMRGC--II 289

Query: 325 IGTKSDLYST 334
           +  K DL   
Sbjct: 290 VVNKWDLIEK 299



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 17/172 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKSSLFN +  +  +I  D+ G TRD +    +       + DT GI  
Sbjct: 3   FTVAIVGRPNVGKSSLFNRIIGERFSITDDVAGVTRDRIYAQAEWLTKRFSLIDTGGIDV 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL 331
            D     +   +  + ++ A++I+ + +  S          ++ +  +   I    K D 
Sbjct: 63  GDAPFLTQIKHQAEIAMDEANVIIFVVDGLSGLTDSDYYIAKLLYKTDKPVIVAVNKIDD 122

Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                  ++           +SS  G G+ +L++K  S +  + K     I 
Sbjct: 123 IVHAHNAFEFYALGFGDPIAVSSHHGIGVGDLLDKTLSYMVEEEKVHEKGII 174


>gi|189461432|ref|ZP_03010217.1| hypothetical protein BACCOP_02087 [Bacteroides coprocola DSM 17136]
 gi|189431961|gb|EDV00946.1| hypothetical protein BACCOP_02087 [Bacteroides coprocola DSM 17136]
          Length = 394

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 18/165 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  ++VA+V+DI GTT D +   +++ G       DTAG
Sbjct: 8   NRLHIGLFGKRNSGKSSLINALTNQEVALVSDIAGTTTDPVYKAMEIHGIGPCVFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-KKEISF-----PKNIDFIFIGTKSD 330
           + +  ++     I++T   ++  D+ LL+   +  +KE+ +      KNI  ++I  K+D
Sbjct: 68  LDDDGELGALR-IQQTMRAMDRTDIALLVCTGDDIEKELEWSRLLKEKNIPVVWILNKAD 126

Query: 331 LYSTYT----------EEYDHLISSFTGEGLEELINKIKSILSNK 365
           L +  T           +    +S+ T +G+E++   + + L ++
Sbjct: 127 LLTDVTSTIRSIEKKCGQVPLGVSACTKQGMEDIRRSLIAKLPDE 171


>gi|197122609|ref|YP_002134560.1| GTP-binding protein EngA [Anaeromyxobacter sp. K]
 gi|196172458|gb|ACG73431.1| small GTP-binding protein [Anaeromyxobacter sp. K]
          Length = 465

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 11/152 (7%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +    E      ++ I+G  N GKS+  NAL  ++  +V+D+PGTTRD +   +  +G 
Sbjct: 184 QEVSEAERPVGDIRLAIVGRPNVGKSTFVNALLGEERFVVSDVPGTTRDAIDSLVAHKGR 243

Query: 268 LVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISF 316
              ++DTAGIR    I   VE   + R    ++ A+++  L +              +  
Sbjct: 244 RFVVTDTAGIRRKRSIALKVESFSVVRAMKAMDQAEVVACLLDATEAGVEQDARLLGLVA 303

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
            K    + +  K D+        D      T 
Sbjct: 304 EKGKALVIVVNKWDIAEREGATQDWYRKELTK 335



 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 20/157 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN LA + VAIV D+PG TRD    D+  EG  V + DT G   E+
Sbjct: 8   VALVGRPNVGKSTLFNRLAGRRVAIVEDVPGVTRDRNYADVIWEGRAVSVVDTGGFEPES 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D +  +  ++  L V+ A  ++L+ +             ++             K D  
Sbjct: 68  RDRLMSQVREQAQLAVDEASAVVLVVDGRDGLTALDRNVADLLRRAGKPLFVAVNKVDTA 127

Query: 331 -------LYSTYTEEYD--HLISSFTGEGLEELINKI 358
                  L   Y   +   H +S+  G G+  L++ I
Sbjct: 128 RTEEDVPLAEFYGLGFGEVHAVSAEHGRGVSGLVDAI 164


>gi|254428914|ref|ZP_05042621.1| GTPase, putative [Alcanivorax sp. DG881]
 gi|196195083|gb|EDX90042.1| GTPase, putative [Alcanivorax sp. DG881]
          Length = 469

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 17/156 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD    D  L GYL  + DT GI E D
Sbjct: 5   IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGDGQLGGYLYTVVDTGGIGEND 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN--------IDFIFIGTKSDLYS 333
           D ++     ++   V  AD++L + +  +    +  +              I  K+D   
Sbjct: 65  DGIDVPMTSQSLQAVGEADVVLFMVDGRAGLTAADEQIASELRKLPKPTYLIVNKTDGVD 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKS 360
             +   +           I++  G G+  +I  I  
Sbjct: 125 ADSAMSEFFALGLTEVLPIAAAHGRGVTSMIEHILE 160



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 82/200 (41%), Gaps = 30/200 (15%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
            H +  K GE   +  ++ +LG  N GKS+L N +  ++  +V D  GTTRD + +  + 
Sbjct: 172 EHRTSKKPGE---DSIRVAVLGRPNVGKSTLINRMLGEERVVVFDHAGTTRDSIEVPFER 228

Query: 265 EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEI---- 314
            G    + DTAG+R    +    EK  + +    +E A +++++ +     + +++    
Sbjct: 229 MGRAYTLIDTAGVRRRGKVFEMVEKFSVIKALQAMEAAQVVVVVIDAREGITDQDLHLLG 288

Query: 315 -SFPKNIDFIFIGTKSD-LYSTYTEEY---------------DHLISSFTGEGLEELINK 357
            +       +    K D L + + E                    IS+  G G+ +L   
Sbjct: 289 YALDSGRALMIAVNKWDGLEADHKERVRVNLGRRLEFAPWVKIKFISALHGTGVGDLWGM 348

Query: 358 IKSILSNKFKKLPFSIPSHK 377
           ++    + F K+  +  +  
Sbjct: 349 VEQAWDSAFIKIGTNELTRM 368


>gi|326331287|ref|ZP_08197579.1| ribosome-associated GTPase EngA [Nocardioidaceae bacterium Broad-1]
 gi|325950920|gb|EGD42968.1| ribosome-associated GTPase EngA [Nocardioidaceae bacterium Broad-1]
          Length = 461

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 69/181 (38%), Gaps = 17/181 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D D  G    + DT G     
Sbjct: 28  VAVVGRPNVGKSTLVNRIIGRREAVVQDVPGVTRDRVSYDADWNGKAFTLVDTGGWDPDA 87

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             + +    +  + V  AD +L + +          +   I        + +  K D   
Sbjct: 88  QGLAERIAAQAEIAVSLADAVLFVVDATVGITDADEAVVRILRKSGKPVVLVANKVDDMR 147

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           T  E               S+  G G  ++++ I ++L +       +     R +  + 
Sbjct: 148 TEAEASALWNLGLGEPWPVSALHGRGSGDMLDAILAVLPDPPPLPEGTEIGGPRRIALVG 207

Query: 385 Q 385
           +
Sbjct: 208 K 208



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 112/295 (37%), Gaps = 31/295 (10%)

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTH 167
           +    + R     +I +  A+++  ++ +   +     ++  +  +         +K+  
Sbjct: 86  DAQGLAERIAAQAEIAVSLADAVLFVVDATVGITDADEAVVRILRKSGKPVVLVANKVDD 145

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK---LGEIIRNGYKIVI 224
           +R+  EA   ++         S         + + I + +        G  I    +I +
Sbjct: 146 MRTEAEASALWNLGLGEPWPVSALHGRGSGDMLDAILAVLPDPPPLPEGTEIGGPRRIAL 205

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETD 281
           +G  N GKSSL N LAK++ A+V ++ GTT D +   ++L G   +  DTAGIR   +  
Sbjct: 206 VGKPNVGKSSLLNKLAKEERAVVDNVAGTTVDPVDELIELGGREWRFIDTAGIRKRVKES 265

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLYS 333
              E     RT   ++ A++ +L+ +     S+++I   +         +    K DL  
Sbjct: 266 SGHEYYASLRTTTAIDRAEVAVLVIDGGEKISEQDIRILQTVREAGRALVIAFNKWDLVD 325

Query: 334 T-----YTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                    E +             I++ TG  ++ L+  +   L     ++   
Sbjct: 326 EDRRWQLDREIERELVQVQWAPRINITARTGWHVDRLVPALDKALEGWETRIGTG 380


>gi|302846043|ref|XP_002954559.1| hypothetical protein VOLCADRAFT_121318 [Volvox carteri f.
           nagariensis]
 gi|300260231|gb|EFJ44452.1| hypothetical protein VOLCADRAFT_121318 [Volvox carteri f.
           nagariensis]
          Length = 269

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 15/138 (10%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLV 269
           +  +       + I+G  N GKSSL NA+A ++ +IV D+ GTTRD +   + L  G  +
Sbjct: 41  EQDDAEEQPLAVAIVGRPNVGKSSLLNAIAGEERSIVCDLSGTTRDAVDTRVTLPGGQRL 100

Query: 270 KISDTAGIRE------TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEIS 315
            + DTAGIR+      + D  E+  + R    V  AD+ +L+ +             E+ 
Sbjct: 101 TLIDTAGIRKRSRVADSPDGAEQLSVDRAMRAVRRADVAVLVIDAVEGVTQQDFRLSELF 160

Query: 316 FPKNIDFIFIGTKSDLYS 333
             +    + +  K D   
Sbjct: 161 ASEGKSVVVVVNKWDRVD 178


>gi|122700695|emb|CAL87936.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISTLIDAILSVLN 167


>gi|121534215|ref|ZP_01666040.1| GTP-binding protein Era [Thermosinus carboxydivorans Nor1]
 gi|121307318|gb|EAX48235.1| GTP-binding protein Era [Thermosinus carboxydivorans Nor1]
          Length = 298

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 25/222 (11%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K GE  ++G+ + ++G  N GKS+L N+L  + +AI++D P TTR+ +   L L+   + 
Sbjct: 3   KAGE-YKSGF-VAVIGRPNVGKSTLVNSLVGQKIAIMSDKPQTTRNRILCVLTLDDAQIL 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDF 322
             DT GI +    + +  ++     +   D+IL + +  ++K        E         
Sbjct: 61  FIDTPGIHKPKHRLGEYMVQAAETTLREVDVILFVVDATAEKGAGEQYILERLAKVATPV 120

Query: 323 IFIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKL 369
           I +  K D         +   Y    D      IS+     L+ L++++K  L+   K  
Sbjct: 121 ILVVNKVDQIPKPQVLPIIDQYARSRDFAAVVPISALQKVNLDRLLDEVKKHLAPGPKYY 180

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           P  + + +     +++ +R  +   L  ++    I A ++  
Sbjct: 181 PDDMVTDQPERLIIAELIRE-KALHLTREEIPHAI-AVDIEE 220


>gi|313903264|ref|ZP_07836656.1| GTP-binding protein Era [Thermaerobacter subterraneus DSM 13965]
 gi|313466352|gb|EFR61874.1| GTP-binding protein Era [Thermaerobacter subterraneus DSM 13965]
          Length = 345

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 88/206 (42%), Gaps = 23/206 (11%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           +H + G   +  R+G+ + ++G  N GKS+L N L  + +AI++D P TTR  +   L+ 
Sbjct: 41  AHPAPGARAQGFRSGF-VALIGRPNVGKSTLLNQLIGRKIAIMSDKPQTTRTRILGVLNR 99

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------EIS 315
            G  +   DT GI +   ++ +  ++     ++  + +  L E   ++         E  
Sbjct: 100 PGAQLVFVDTPGIHKPQHLLGEHMVQIARRTLQEVEAVCWLVEAPDREPGPGDRFIAEQL 159

Query: 316 FPKNIDFIFIGTKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSIL 362
                  + +  K D         + + + E       H +S+  G G+ EL+  ++ +L
Sbjct: 160 AGLKTPRVLVVNKIDQVAPGEVPAIAARFAELGTFAAVHPVSALHGVGVAELVGTLEGLL 219

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVR 388
               +  P  + + +     +++ +R
Sbjct: 220 PEGPRFFPEDMVTDQPEAQIMAELIR 245


>gi|262182365|ref|ZP_06041786.1| GTP-binding protein EngA [Corynebacterium aurimucosum ATCC 700975]
          Length = 537

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 87/230 (37%), Gaps = 20/230 (8%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFL-KNDISSHISQGKLGE--IIRNGYKIVILGH 227
             + + D SE  +      +E       L + +  +      +GE     N   + ++G 
Sbjct: 51  DFDYEFDESEFGEADFGDEEEPAEGDAPLSEEEWEALSHAFGVGEEHTEENLCTVAVVGR 110

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKSSL N    +  A+V D PG TRD ++   D  G    + DT G       +   
Sbjct: 111 PNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVADWNGQRFFVQDTGGWDPNVKGIHAA 170

Query: 288 GIKRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKSDLYSTYTEEY 339
             ++    ++ AD+I+ + +     ++ +    +      +  I +  K D  + Y +  
Sbjct: 171 IARQAEQAMDTADVIVFVVDTKVGITETDAVMARKLQRSEVPVILVSNKFDSETMYADMA 230

Query: 340 DHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +           +S+  G G  +++++I  +   + +    +    +  L
Sbjct: 231 EFYALGLGDPWPVSAQHGRGGADVLDEILRLFPEEPRHSSITSGPRRVAL 280



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 28/221 (12%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
               S +       + ++I     +      I +G + + ++G  N GKSSL N L  ++
Sbjct: 240 PWPVSAQHGRGGADVLDEILRLFPEEPRHSSITSGPRRVALVGKPNVGKSSLLNKLTAEE 299

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENAD 300
            ++V +  GTT D +   + L+  L K  DTAG+R+        E     RT   ++ A+
Sbjct: 300 RSVVDNAAGTTVDPVDSLVQLDQRLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAE 359

Query: 301 LILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST-----YTEEYD------- 340
           + ++L + + +          +        +    K DL           E D       
Sbjct: 360 VCIMLIDASQEVSEQDQRVLNMILEAGKALVIAFNKWDLVDEDRRYYLEREIDENLRHLP 419

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                 IS+ TG  L++L   +   L +  +++     ++ 
Sbjct: 420 WVTRVNISAETGRALQKLEPAMIEALESWDQRVSTGQLNNW 460


>gi|77164340|ref|YP_342865.1| small GTP-binding protein domain-containing protein [Nitrosococcus
           oceani ATCC 19707]
 gi|254434862|ref|ZP_05048370.1| GTPase, putative [Nitrosococcus oceani AFC27]
 gi|123757906|sp|Q3JCW1|DER_NITOC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|76882654|gb|ABA57335.1| Small GTP-binding domain protein [Nitrosococcus oceani ATCC 19707]
 gi|207091195|gb|EDZ68466.1| GTPase, putative [Nitrosococcus oceani AFC27]
          Length = 464

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 27/195 (13%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           + +  EI   G +  ++G  N GKS+L N +  ++  + ++IPGTTRD ++I     G  
Sbjct: 166 EREESEIQAKGLQFAVIGRPNVGKSTLVNRILGEERVLSSEIPGTTRDSISIPFRHHGKD 225

Query: 269 VKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFP 317
             + DTAGIR      D VEK  + ++   +  A +++L+ + +            +   
Sbjct: 226 YTLVDTAGIRRRSRILDKVEKFSVIQSLQSIAIAQVVILVIDAHDSVVEQDLHLAGVILE 285

Query: 318 KNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSI 361
                +    K D       +                  H IS+  G G+ +L   I   
Sbjct: 286 SGKGVVIAVNKWDGLPLEQRQRVKTDLDRRLPFLVFARIHFISALHGSGVGDLFPSIDEA 345

Query: 362 LSNKFKKLPFSIPSH 376
             +    LP    + 
Sbjct: 346 YQSANSHLPTGELNR 360



 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 13/142 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD              + DT G+ E +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVVDQPGVTRDRKYGLAHYGEQSFFVVDTGGVMEQE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLYS 333
             + +    +  L +E AD+I  L +         +EI+            +  K++   
Sbjct: 65  SGIGRLMRAQAQLAIEEADVIFFLVDGREGLSSLDEEIAAWLRCAQKPLKLVINKAE--- 121

Query: 334 TYTEEYDHLISSFTGEGLEELI 355
               + D + S F   GL E I
Sbjct: 122 --GRDGDLVASEFYRLGLGEPI 141


>gi|15892953|ref|NP_360667.1| GTP-binding protein EngA [Rickettsia conorii str. Malish 7]
 gi|24636839|sp|Q92GU2|DER_RICCN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|15620147|gb|AAL03568.1| conserved GTP-binding protein [Rickettsia conorii str. Malish 7]
          Length = 447

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDENP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLYS 333
           + + +  I++T   +  ADLI  + +       + K   SF +  N   I +  K +   
Sbjct: 66  NSMGERLIEQTTKAILEADLICFMVDGRSGILPDDKLLSSFVRKYNKPAILVVNKCEKAF 125

Query: 334 TYTEEY-------DHLISSFTGEGLEELINKIKSILSNK 365
            + +EY          IS+  G GL +L ++I + L  +
Sbjct: 126 DFDKEYYKLGFDSMIAISAEHGTGLIDLYDEIIAKLPEE 164



 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 85/204 (41%), Gaps = 35/204 (17%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           +  I ++I+    G+ ++    IV+ G  NAGKS+  NAL   +  +     G TR+ + 
Sbjct: 164 EESIKTNIADPIKGDCLQ----IVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIE 219

Query: 260 IDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK---KE 313
           ID   +   +K+ DTAG+R+     + +EK     T   ++ A+ ++L+ +  +    ++
Sbjct: 220 IDWQYKNNHIKLIDTAGLRKKSTITESLEKLSASDTINSIKFANTVILMIDALAPLKQQD 279

Query: 314 ISFP-----KNIDFIFIGTKSDLYSTYTEEYDH--------------------LISSFTG 348
           ++       +    + +  K DL     +E                        IS+   
Sbjct: 280 LNIASHVVHEGRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQVKGIPVLFISAINK 339

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           + +E++++    I     KK+  S
Sbjct: 340 QNIEQVLDACLKIYKIWNKKITTS 363


>gi|124267181|ref|YP_001021185.1| GTP-binding protein EngA [Methylibium petroleiphilum PM1]
 gi|166225824|sp|A2SHB1|DER_METPP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|124259956|gb|ABM94950.1| putative GTP-binding protein EngA [Methylibium petroleiphilum PM1]
          Length = 446

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 68/164 (41%), Gaps = 18/164 (10%)

Query: 194 NDILFLKNDISSHISQGKLGEII-------RNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
                +++ +++ +      E             ++ + G  N GKS+L N    ++  +
Sbjct: 147 AHGQGIRSLLTAALEDFAFDEPDDLALDDPERPIRLAVAGRPNVGKSTLINTWLGEERLV 206

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
             D+PGTTRD +++  +  G   ++ DTAG+R    +    EK  + +T   + +A+++L
Sbjct: 207 AFDLPGTTRDAISVPFERNGQKFELIDTAGLRRKGKVFESIEKFSVVKTLQAIADANVVL 266

Query: 304 LLKEI-----NSKKEIS---FPKNIDFIFIGTKSDLYSTYTEEY 339
           LL +      +    I+          +    K D   +Y  E 
Sbjct: 267 LLLDATQGVTDQDAHIAGYILDSGRAVVLAVNKWDAVDSYQREL 310



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 84/215 (39%), Gaps = 24/215 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + ++G  N GKS+LFN L K   AIV D  G TRD    D  L      + DT G   T 
Sbjct: 5   LALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGDGRLGEREFIVVDTGGFEPTA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD-- 330
           +  + KE  K+T   V  +D+++ + ++ +       +I+          +    K++  
Sbjct: 65  ESGIYKEMAKQTRQAVAESDVVIFVVDVRAGVTGQDHDIARYLRTAGKKVLLAANKAEGM 124

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           L      E+          +SS  G+G+  L+       +        ++   +R +   
Sbjct: 125 LEGIQLAEFYELGMGEPLAVSSAHGQGIRSLLTAALEDFAFDEPD-DLALDDPERPIRLA 183

Query: 384 SQTVRYLEMASLNEKDCGLD-IIAENL----RLAS 413
                 +  ++L     G + ++A +L    R A 
Sbjct: 184 VAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAI 218


>gi|224438499|ref|ZP_03659419.1| GTP-binding protein EngA [Helicobacter cinaedi CCUG 18818]
 gi|313144927|ref|ZP_07807120.1| GTP-binding protein engA [Helicobacter cinaedi CCUG 18818]
 gi|313129958|gb|EFR47575.1| GTP-binding protein engA [Helicobacter cinaedi CCUG 18818]
          Length = 527

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 28/227 (12%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKS 233
           D ++E+++      +  ND       +   +      E  ++      + I+G  N GKS
Sbjct: 161 DLAKEQNLNAILKSQFENDTESNDESLEEFLDTLDSKEQDKDSEECIAVGIIGRVNVGKS 220

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKR 291
           SL NAL  K+ ++V+++ GTT D +    ++ G  V+  DTAGIR +  I  +EK  + R
Sbjct: 221 SLLNALLGKERSVVSEVAGTTIDPVDETGEILGQKVRFVDTAGIRRSSKILGIEKFALDR 280

Query: 292 TFLEVENADLILLLKEI-------NSKKEISFPKNI-DFIFIGTKSDL----YSTYTEEY 339
           T   +  + + +L+ +        + K     PK+    I +  K D     +     E+
Sbjct: 281 TNKALAQSHIAILVLDASEPFVELDEKISSLIPKHALGVIVVLNKWDKRHKEFKEIMAEF 340

Query: 340 DHLI-----------SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            H             S+  G  +E+L ++I  +      ++P S+ +
Sbjct: 341 KHRFGFLSFVPVMTLSALNGRNIEKLKSEILKVYERFSYRIPTSVLN 387



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 9/128 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L K+ +AI +++ GTTRDV     ++ G  V++ DT G+ +  
Sbjct: 4   IAILGKPNVGKSSLFNRLIKQHLAITSNVSGTTRDVKKACFEISGVDVELIDTGGLDKAQ 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPKNI-----DFIFIGTKSDLYS 333
            +  K   + +      ADL+L + +   +    +I++ + I       I +  K D   
Sbjct: 64  GLFAKVS-ENSLKAGAEADLVLYMVDGSLLPQDDDIAYFRKIQRLQKPLILVVNKVDNDK 122

Query: 334 TYTEEYDH 341
                +D 
Sbjct: 123 IKQRAWDF 130


>gi|261337755|ref|ZP_05965639.1| ribosome-associated GTPase EngA [Bifidobacterium gallicum DSM
           20093]
 gi|270277209|gb|EFA23063.1| ribosome-associated GTPase EngA [Bifidobacterium gallicum DSM
           20093]
          Length = 709

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 105/298 (35%), Gaps = 53/298 (17%)

Query: 126 LEAESLADLISSETEMQRRLS---------MEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
            + E +   I+S+ ++   L+           G++     +          +   +    
Sbjct: 332 ADVEGIESAIASQAQIAVELADAVILVVDGQVGLTASDERIVRMLRASGKPVTVAVN-KA 390

Query: 177 DFSEEEDVQNFSSKEVLNDI--------LFLKNDISSHISQGKLGEIIRNGY-------K 221
           D    E   +   K  L +           + + + + + + +  E   +G+       +
Sbjct: 391 DDQTAEYAASEFWKLGLGEPFPISAMHGRGVGDLLDAALDKLRQAERT-SGFLTPTGLRR 449

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N L+  + A+V D+ GTTRD +   +D++G      DTAGI+   
Sbjct: 450 VALVGRPNVGKSSLLNQLSHSERAVVNDLAGTTRDPVDEIVDIDGQDYLFIDTAGIKRRQ 509

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
                 E     RT   +E ++L L+L + +        K            + +  K D
Sbjct: 510 HKLSGAEYYSSLRTQAAIERSELALVLFDASQPISDQDLKVMSTAVDAGRAVVLVFNKWD 569

Query: 331 LYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L   +  +                    +S+ TG     L   +   L +  K++P  
Sbjct: 570 LMDDFDRQRMERLWKTEFERVTWAQRVNLSAKTGWHTNRLSRAMTQALESWDKRIPTG 627



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 134/410 (32%), Gaps = 78/410 (19%)

Query: 53  FFGLDGRILDKGLLIVF----------------PSPE-SFTGEDSAE----------FHV 85
              LD  I+++ L+                    +P+ S  G D  E             
Sbjct: 47  GIDLDAEIINEQLVTEMVGELFTGDHIDITVDPDAPKVSIDGRDVTEEIRSSQVSKHVSK 106

Query: 86  HGGIAVVNGILEELAKMPNLRLANPGEFSR-RAFENGKIDLL-----EAESLADLISSET 139
              I  V  IL    +           FS+ R       D+      +AE    L + E 
Sbjct: 107 VSNIIAVRHILIAAQRAYIAAQGPEESFSQGRGIVAEGRDITTVVAPDAEVRVLLTARED 166

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
             Q R + +   G  +       D++    +      +     D  + + ++ L+ ++ L
Sbjct: 167 VRQARRNRQAAKGVGAEDVQA-RDQMDAKVTSFMTASEGVTTVDNSDLTFEQTLDVLIGL 225

Query: 200 KNDISSHISQGK-----LGEIIRNGYK----------------------IVILGHSNAGK 232
             D     +  +      G  +  G +                      + ++G  N GK
Sbjct: 226 VEDAEEEQAYAEYSANLEGYELDEGDEGLIDGSSFLGEEREAQAKAVGVLAVVGRPNVGK 285

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           S+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     + +E     + 
Sbjct: 286 STLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIESAIASQA 345

Query: 293 FLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSD--LYSTYTEEY--- 339
            + VE AD ++L+ +    + +  E    +             K+D         E+   
Sbjct: 346 QIAVELADAVILVVDGQVGLTASDERIVRMLRASGKPVTVAVNKADDQTAEYAASEFWKL 405

Query: 340 ----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
                  IS+  G G+ +L++     L    +   F  P+  R +  + +
Sbjct: 406 GLGEPFPISAMHGRGVGDLLDAALDKLRQAERTSGFLTPTGLRRVALVGR 455


>gi|223994975|ref|XP_002287171.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976287|gb|EED94614.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 460

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 93/244 (38%), Gaps = 40/244 (16%)

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
            +    +L   E   V           +  + +DI+  +              + I+G  
Sbjct: 134 LASQFWNLGLGEPFAVSALHGVGTAEVMEKMFDDIAKPLDGEDD---TDEEINVAIIGRP 190

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-----EGYL--VKISDTAGIRETD 281
           N GKSSL N +   + AIV+D+ GTTRD +   ++      EG     +  DTAGIR   
Sbjct: 191 NVGKSSLINTIFGSNRAIVSDVAGTTRDSIDAIMERPSSDPEGLPTIYRFVDTAGIRRKG 250

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNID-----FIFIGTKSD 330
            I    E   + R    +  AD++LL+ +  +   +++    + I       + +  K D
Sbjct: 251 KIEFGPEFFMVNRALRAIRRADVVLLVLDATAGVTEQDRVLAQKISDDGRACVILCNKWD 310

Query: 331 L------------YSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
                           + EE           +S+ TG+ + ++   + S ++   +++  
Sbjct: 311 AVIDKDSSTYDQSVKYFREELPQIRWAPILFVSAATGQRVGKIYEAVDSAVNAHRRRIST 370

Query: 372 SIPS 375
           S+ +
Sbjct: 371 SVLN 374



 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 15/124 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV--AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
           I ++G  N GKS+L N LA      AIV D  G TRD    + +  G   ++ DT G+  
Sbjct: 3   IAVVGRPNVGKSALVNRLAGTQSGGAIVADEEGITRDRTYRNAEFLGEAFQLVDTGGLVF 62

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKE-------INSKKEI----SFPKNIDFIFIG 326
            + D +  KE  ++  + +E +  ++L+ +       ++ +  I       K +  I   
Sbjct: 63  DDNDALFAKEIREQAMIAIEESAGVILVVDGQMGPTSMDEQLAIFLRKEVLKKMPVILAV 122

Query: 327 TKSD 330
            K +
Sbjct: 123 NKCE 126


>gi|163797497|ref|ZP_02191448.1| GTP-binding protein engA [alpha proteobacterium BAL199]
 gi|159177246|gb|EDP61805.1| GTP-binding protein engA [alpha proteobacterium BAL199]
          Length = 467

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 18/166 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ ++G  N GKS+LFN L     A+V D PG TRD    D  +     ++ DTAG+ +
Sbjct: 3   IKVAVIGRPNVGKSTLFNRLTGTRHALVDDTPGVTRDRREGDGRIADLSFRVIDTAGLED 62

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             DD +E    ++T   V  ADL+ +L +  +          +     ++  + +  K +
Sbjct: 63  AFDDSLEARMRRQTERAVAEADLVFMLIDARAGITPLDSHFADWLRRVDVPVVVLANKCE 122

Query: 331 -------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFK 367
                  L   Y+        +S+  GEG+ EL + I+ +   K +
Sbjct: 123 GRAGAAGLAEAYSLGLGDPVPVSAEHGEGMGELYDIIRELAERKGE 168



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 31/210 (14%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            +S     E      ++ I+G  N GKS+L N L  +D  +     G TRD + ++    
Sbjct: 186 ELSDEMEAEPEVGPIRLAIVGRPNVGKSTLVNRLIGEDRLLTGPEAGITRDAIEVEWQYR 245

Query: 266 GYLVKISDTAGIRETDDIVEK---EGIKRTFLEVENADLILLLKEIN---SKKEISFPK- 318
              +++ DTAG+R    + EK        T   V  A ++LL+ +      K++++  + 
Sbjct: 246 DRPIRLVDTAGMRRKARVQEKLERLSTADTRRAVRYAHVVLLVLDGEMMLEKQDLTIARM 305

Query: 319 ----NIDFIFIGTKSDLYS------------------TYTEEYDHLISSFTGEGLEELIN 356
                   +    K D+                             +S+  G  L +L++
Sbjct: 306 ALEEGRALVIAANKWDVIQDKNAASQMLRDRLDTSLTQVRGVPWVPVSAVRGTNLTKLLD 365

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
            +         ++P       R L  + + 
Sbjct: 366 AVLETYDRWNTRIPT--AKLNRWLEGMLEA 393


>gi|238650994|ref|YP_002916850.1| GTP-binding protein EngA [Rickettsia peacockii str. Rustic]
 gi|259645885|sp|C4K2K1|DER_RICPU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238625092|gb|ACR47798.1| GTP-binding protein EngA [Rickettsia peacockii str. Rustic]
          Length = 447

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDENP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLYS 333
           + + +  I++T   +  ADLI  + +       + K   SF +  N   I +  K +   
Sbjct: 66  NSMGERLIEQTTKAILEADLICFMVDGRSGILPDDKLLSSFVRKYNKPAILVVNKCEKAF 125

Query: 334 TYTEEY-------DHLISSFTGEGLEELINKIKSILSNK 365
            + +EY          IS+  G GL +L ++I + L  +
Sbjct: 126 DFDKEYYKLGFDSMIAISAEHGTGLIDLYDEIIAKLPEE 164



 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 85/204 (41%), Gaps = 35/204 (17%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           +  I ++I+    G+ ++    IV+ G  NAGKS+  NAL   +  +     G TR+ + 
Sbjct: 164 EESIETNIADPIKGDCLQ----IVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIE 219

Query: 260 IDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK---KE 313
           ID   +   +K+ DTAG+R+     + +EK     T   ++ A+ ++L+ +  +    ++
Sbjct: 220 IDWQYKNNHIKLIDTAGLRKKSTITESLEKLSASDTINSIKFANTVILMIDALAPLKQQD 279

Query: 314 ISFP-----KNIDFIFIGTKSDLYSTYTEEYDH--------------------LISSFTG 348
           ++       +    + +  K DL     +E                        IS+   
Sbjct: 280 LNIASHVVNEGRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQVKGIPVLFISAINK 339

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           + +E++++    I     KK+  S
Sbjct: 340 QNIEQVLDACLKIYKIWNKKITTS 363


>gi|308189713|ref|YP_003922644.1| GTP-binding protein [Mycoplasma fermentans JER]
 gi|319776899|ref|YP_004136550.1| gtp-binding protein enga [Mycoplasma fermentans M64]
 gi|238809685|dbj|BAH69475.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624455|gb|ADN68760.1| GTP-binding protein [Mycoplasma fermentans JER]
 gi|318037974|gb|ADV34173.1| GTP-binding protein engA [Mycoplasma fermentans M64]
          Length = 435

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 127/300 (42%), Gaps = 40/300 (13%)

Query: 119 ENGKIDLLEAESLADLISSETEMQ----RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
              KI + EA  +  ++   +++        SM   SG+   +      KL +I  F  +
Sbjct: 74  IQAKIAIEEANVIIFMVDGASDITNDDLMIYSMLQKSGKPIVVVAN---KLDNISQFNYS 130

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
              +S   D     S +  N +  + +    H+      E     +K+ I+G  N+GKSS
Sbjct: 131 W--YSLGVDHIFPISAQHGNGVGDVLDQCLKHLRLDD--EKSDKLFKLSIIGRPNSGKSS 186

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKR 291
           + N LA ++ +IV+DI GTTRD +   + ++  + +I DTAGI    + +D V+   +KR
Sbjct: 187 MLNRLANENRSIVSDIAGTTRDSVKSIVKIKDEVFEIIDTAGITRKSKIEDSVDHYALKR 246

Query: 292 TFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYSTYTE---EYD 340
               ++ ++L L+L +   +           +   N   I +  K DL +  T+   E++
Sbjct: 247 AMSSLDESNLSLVLIDSTQELSHFDSRIIGYALDNNKPIIIVVNKWDLINKETKTMVEFE 306

Query: 341 HLI---------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             +               S  T   +++LI+ I  +  N  + +  S+ S+      + Q
Sbjct: 307 KKMRNKFHFVPWVPICFVSVKTNSRMDKLIDTIIKVKQNLERDVKPSVLSNLIRETQMIQ 366



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 15/164 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  K  +I+ D PG TRD L       G  +K+ DT GI   +
Sbjct: 6   IAIIGKPNVGKSTLFNRLIGKRSSIIYDRPGVTRDRLYETFSWNGKEIKVIDTGGIEIEN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
              ++    +  + +E A++I+ + +  S           +        + +  K D  S
Sbjct: 66  RPFQEHIQIQAKIAIEEANVIIFMVDGASDITNDDLMIYSMLQKSGKPIVVVANKLDNIS 125

Query: 334 TYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            +         ++   IS+  G G+ +++++    L    +K  
Sbjct: 126 QFNYSWYSLGVDHIFPISAQHGNGVGDVLDQCLKHLRLDDEKSD 169


>gi|23011471|ref|ZP_00051819.1| COG1160: Predicted GTPases [Magnetospirillum magnetotacticum MS-1]
          Length = 481

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 19/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   D  G    + DT G     
Sbjct: 79  LAVVGRPNVGKSTLVNRILGRREAVVEDKPGVTRDRVSYPADWSGRRFTLVDTGGWEVDV 138

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +E +  ++  + +  AD +L + +              +        +    K D   
Sbjct: 139 AGIESKVAEQAEVAISLADAVLFVVDATVGATATDERVVRLLRESGKPVVLCANKVDGQS 198

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  L+S    E  H +S+  G G  +L++   + L  + +    
Sbjct: 199 GEADAAYLWSLGLGE-PHPVSALHGRGTGDLLDAAMAALPTESEHGEV 245



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 199 LKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           L   +++  ++ + GE+   G + + ++G  N GKSSL N LA  D  +V +I GTTRD 
Sbjct: 229 LDAAMAALPTESEHGEVRPTGPRRVALVGRPNVGKSSLLNKLAGADRVVVDEIAGTTRDP 288

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +   + ++     + DTAGIR         +     RT   +E A+L ++L + +
Sbjct: 289 VDELVTIKDVPYVLVDTAGIRRRVHQTKGADFYASLRTQAAIEKAELAVVLVDAS 343


>gi|224283101|ref|ZP_03646423.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313140250|ref|ZP_07802443.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132760|gb|EFR50377.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 711

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 79/416 (18%), Positives = 144/416 (34%), Gaps = 80/416 (19%)

Query: 49  SLRYFFGLDGRILDK-----GLLIVFPSPE----------SFT--GEDSAE--------- 82
            L     LDG  +D+      +   F              S T  GED +E         
Sbjct: 43  CLHQGIDLDGDQVDEQQITEAVAEFFTGDHFDIGVDPDHPSITADGEDISEAIRSSEVSS 102

Query: 83  -FHVHGGIAVVNGILEELAKMPNLRLANPGEFSR-RAFENGKIDLLEAES----LADLIS 136
                  +  V  +L    +    R +    FS  R       D+    +    +  L++
Sbjct: 103 HVSKVSNVIPVRHVLIAAQRAYIARESAADSFSLGRGIVAEGRDVTTVVAPDAEVRVLLT 162

Query: 137 SETE--MQRR----LSMEGMSGELSSLYGQWIDKLTHIRSFI-------EADLDFSEEED 183
           +  E    RR    ++  G+ GE  +   +   K+T   +          +D+DF +  D
Sbjct: 163 AREEVRQARRTGQAVAGAGVGGEDVAARDRADSKVTSFLTAADGVTTVDNSDMDFQQTLD 222

Query: 184 V------------QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-----IVILG 226
           V            +       L+D    + D    I+  + G    +        + ++G
Sbjct: 223 VLITLVADAVEVQEYEQYAANLSDYELDEGD-EQIIAGSRYGIEDESPAPKAVGVLAVVG 281

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     + +E 
Sbjct: 282 RPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWSGTEFKLVDTGGWEADVEGIES 341

Query: 287 EGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSD--LYSTYT 336
               +  + V+ +D ++L+ +      ++ + I                K D       T
Sbjct: 342 AIASQAQIAVQLSDAVILVVDGHVGLTDTDERIVKMLRASGKPVTLAVNKVDDGASEYLT 401

Query: 337 EEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
            E+        + IS+  G G+ +L++     L    K   F  P+H R +  + +
Sbjct: 402 AEFWKLGMGEPYGISAMHGRGVGDLLDAALDSLRKADKTSGFLTPTHLRRVALVGR 457



 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA +  A+V D+ GTTRD +   +D++G      DTAGI+  
Sbjct: 451 RVALVGRPNVGKSSLLNQLAGEQRAVVNDLAGTTRDPVDETIDIDGEDWLFIDTAGIKRR 510

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKS 329
              V   +     RT   +E ++L L+L + +        K            + +  K 
Sbjct: 511 LHKVSGADYYSSLRTQAAIERSELALVLFDSSQPISDQDLKVMSQAVDAGRAVVLVFNKW 570

Query: 330 DLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL   +  +                    +S+ TG     L + +++ L +  K++P  
Sbjct: 571 DLMDDFGRQRLERLWKTEFNRVTWAQRVNLSAKTGWHTNRLADAMRNALESWDKRIPTG 629


>gi|289811471|ref|ZP_06542100.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 119

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 53/99 (53%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L E +     + ++G  N GKS+LFN L +   A+V D PG TRD      ++EG     
Sbjct: 6   LNEALNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIC 65

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            DT GI  T+D VE    +++ L +E AD++L + +  +
Sbjct: 66  IDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARA 104


>gi|254449216|ref|ZP_05062665.1| GTP-binding protein EngA [gamma proteobacterium HTCC5015]
 gi|198261193|gb|EDY85489.1| GTP-binding protein EngA [gamma proteobacterium HTCC5015]
          Length = 472

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 94/249 (37%), Gaps = 28/249 (11%)

Query: 151 SGELSSLYGQWIDKLT-HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209
            G+   L    +D     +       L   E   +    ++ V + I  L   +  H  +
Sbjct: 109 KGKPVFLVANKMDGCDPDVIRADFYQLGLGEPLTIAASHNRGVHSLIETLFETLPDHFDE 168

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
               +   +  +I ++G  N GKS+L N +  +   +  D PGTTRD + +  + E    
Sbjct: 169 EIPDKEHDDSVRIAVVGRPNVGKSTLINRILGETRVLAYDAPGTTRDSIFVPFESELGRY 228

Query: 270 KISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK----- 318
            + DTAG+R+   I    EK  + +    +  A ++L + +     ++++++  +     
Sbjct: 229 TLIDTAGVRKRGKIHETVEKFSVVKALQAIAEAHVVLQVIDARRGVAEQDLTLLREVLHQ 288

Query: 319 NIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSIL 362
               +F+  K D  S    ++                 H IS+  G G+  ++  +    
Sbjct: 289 GSALVFVINKWDGLSPEERDFIKEDLSRRLNFISFPEFHFISALHGTGVGHILEAVNRAY 348

Query: 363 SNKFKKLPF 371
            +   KL  
Sbjct: 349 DSAMIKLGT 357



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 19/166 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L +   A+V D+PG TRD    +  L      + DT G+    
Sbjct: 5   IAIVGRPNVGKSTLFNCLTRTRDALVADMPGLTRDRKYGNGKLGDRAYVVVDTGGLSTDQ 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI---------NSKKEISFPKNIDFIFIGTKSDLY 332
           D ++     +    ++ AD++L + +          N  +EI   K      +  K D  
Sbjct: 65  DEMDNLMASQAQQAMDEADILLFMVDSREGINPIDENIAREIR-KKGKPVFLVANKMDGC 123

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKL 369
                  D            ++    G+  LI  +   L + F + 
Sbjct: 124 DPDVIRADFYQLGLGEPLTIAASHNRGVHSLIETLFETLPDHFDEE 169


>gi|157964826|ref|YP_001499650.1| GTP-binding protein EngA [Rickettsia massiliae MTU5]
 gi|157844602|gb|ABV85103.1| GTP-binding protein [Rickettsia massiliae MTU5]
          Length = 483

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 42  ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDENP 101

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLYS 333
           + + +  +++T   +  ADLI  + +       + K   SF +  N   I +  K +   
Sbjct: 102 NSMGERLMEQTTKAILEADLICFMVDGRSGILPDDKLLSSFVRKYNKPAILVVNKCEKAF 161

Query: 334 TYTEEY-------DHLISSFTGEGLEELINKIKSILSNK 365
            + +EY          IS+  G GL +L ++I + L  +
Sbjct: 162 DFDKEYYKLGFDSMIAISAEHGTGLIDLYDEIIAKLPEE 200



 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 80/186 (43%), Gaps = 17/186 (9%)

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI-IRNGYK-----IV 223
           +F      +    D     S E    ++ L ++I + + + +  E  I +  K     IV
Sbjct: 160 AFDFDKEYYKLGFDSMIAISAEHGTGLIDLYDEIIAKLPEEEAIETNIADPIKGDCLQIV 219

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-- 281
           + G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K+ DTAG+R+    
Sbjct: 220 VSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKKSTI 279

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFP-----KNIDFIFIGTKSDLY 332
            + +EK     T   ++ A+ ++L+ +  +    ++++       +    + +  K DL 
Sbjct: 280 TESLEKLSASDTINSIKFANTVILMIDALAPLKQQDLNIASHVVNEGRSIVIVVNKWDLV 339

Query: 333 STYTEE 338
               +E
Sbjct: 340 KESEKE 345


>gi|86158079|ref|YP_464864.1| GTP-binding protein EngA [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774590|gb|ABC81427.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 465

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 11/140 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  N GKS+  NAL  ++  +V+D+PGTTRD +   +  +G    ++DTAGIR 
Sbjct: 196 IRLAIVGRPNVGKSTFVNALLGEERFVVSDVPGTTRDAIDSLVAHKGRRFVVTDTAGIRR 255

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              I   VE   + R    ++ A+++  L +              +   K    + +  K
Sbjct: 256 KRSIAQKVESFSVVRAMKAMDQAEVVACLLDATEAGVEQDARLLGLVAEKGKALVIVVNK 315

Query: 329 SDLYSTYTEEYDHLISSFTG 348
            D+        D      T 
Sbjct: 316 WDIAEREGATQDWYRKELTK 335



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 20/157 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN LA + VAIV D+PG TRD    D+  EG  V + DT G   E+
Sbjct: 8   VALVGRPNVGKSTLFNRLAGRRVAIVEDVPGVTRDRNYADVIWEGRAVSVVDTGGFEPES 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D +  +  ++  L V+ A +++L+ +             E+             K D  
Sbjct: 68  RDRLMSQVREQAQLAVDEASVVVLVVDGRDGLTSLDRAVAELLRRAGKPLFVAVNKVDTA 127

Query: 331 -------LYSTYTEEYD--HLISSFTGEGLEELINKI 358
                  L   Y   +   H +S+  G G+  L++ I
Sbjct: 128 RTEEDVPLAEFYGLGFGEVHALSAEHGRGVSGLVDAI 164


>gi|297559956|ref|YP_003678930.1| ribosome-associated GTPase EngA [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844404|gb|ADH66424.1| ribosome-associated GTPase EngA [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 478

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 30/210 (14%)

Query: 198 FLKNDISSHISQGKLGEII--RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            L + + +   +  LGE     +G  +I +LG  N GKSSL N LA +D  +V  + GTT
Sbjct: 173 DLLDALVAEFPEQPLGEEDDGEDGPPRIALLGRPNVGKSSLLNRLAGEDRVVVDAVAGTT 232

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINSK 311
           RD +   ++L G   K  DTAGIR     ++        RT   +E A+  ++L +++  
Sbjct: 233 RDAVDELIELGGKTWKFIDTAGIRRRFRALQGADYYATMRTGTALERAEAAVVLMDVSEP 292

Query: 312 K--------EISFPKNIDFIFIGTKSDLYST-----YTEEYD-----------HLISSFT 347
                    E         +    K D+          +E D             +S+ T
Sbjct: 293 LAEQDIRVVEQVVEAGRGLVLAFNKWDILDEERRTYLEKEIDRQLARVSWAPRVNVSAKT 352

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           G  +E+L+  I++ LS   +++P    ++ 
Sbjct: 353 GRHMEKLVPAIETSLSGWNQRIPTGQLNNW 382



 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 17/188 (9%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DIS  +  G   E       + ++G  N GKSSL N +  +  A+V D+PG TRD +  D
Sbjct: 5   DISDVVHGGADAEEPATLPVVAVVGRPNVGKSSLVNRIIGRREAVVEDVPGVTRDRVAYD 64

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKE 313
            + +     + DT G   +   +     ++     + AD+IL + +          +   
Sbjct: 65  AEWQNTRFTLVDTGGWETSVSGLAAMVARQAEYAAQTADVILFVVDATVGVTDADAAVTR 124

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSN 364
           +        +    K D      +  D            S+  G G  +L++ + +    
Sbjct: 125 VLRSTKRPVVLAANKVDGSMQEADALDLWQLGVGQPFPISALHGRGTGDLLDALVAEFPE 184

Query: 365 KFKKLPFS 372
           +       
Sbjct: 185 QPLGEEDD 192


>gi|67458640|ref|YP_246264.1| GTP-binding protein EngA [Rickettsia felis URRWXCal2]
 gi|75536894|sp|Q4UMV9|DER_RICFE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|67004173|gb|AAY61099.1| Conserved GTP-binding protein [Rickettsia felis URRWXCal2]
          Length = 447

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    +  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTEGKIGSFEFLLIDTPGLEENP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLYS 333
           D + +  I++T   +  ADLI  + +       + K   SF +  N   I I  K +   
Sbjct: 66  DSMGERLIEQTTKAILEADLICFMVDGRSGILPDDKLLGSFVRKYNKPAILIVNKCEKAF 125

Query: 334 TYTEEYDH-------LISSFTGEGLEELINKIKSILSNK 365
            + +EY          IS+  G GL +L ++I + L  +
Sbjct: 126 DFDKEYYKLGFDSMVAISAEHGTGLIDLYDEIIAKLPEE 164



 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 116/302 (38%), Gaps = 42/302 (13%)

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH-- 167
           P     R  E     +LEA+ +  ++   + +      + + G     Y +    + +  
Sbjct: 65  PDSMGERLIEQTTKAILEADLICFMVDGRSGILPD---DKLLGSFVRKYNKPAILIVNKC 121

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE------IIRNGYK 221
            ++F      +    D     S E    ++ L ++I + + + +  E      I R+  +
Sbjct: 122 EKAFDFDKEYYKLGFDSMVAISAEHGTGLIDLYDEIIAKLPEEESIETNIADPIKRDCLQ 181

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IV+ G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K+ DTAG+R+  
Sbjct: 182 IVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKKS 241

Query: 282 ---DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFP-----KNIDFIFIGTKSD 330
              + +EK         ++ A+ ++L+ +  +    ++++       +    + +  K D
Sbjct: 242 TITESLEKLSASDAINSIKFANTVILMIDALAPLKQQDLNIASHVVNEGRSIVIVVNKWD 301

Query: 331 LYSTYTEEYDH--------------------LISSFTGEGLEELINKIKSILSNKFKKLP 370
           L     +E                        IS+   + +E++++    I     KK+ 
Sbjct: 302 LVKESEKEAFQEEFYYQINTHLPQVKGVPVLFISAINKQNIEQVLDACLKIYKIWNKKIT 361

Query: 371 FS 372
            S
Sbjct: 362 TS 363


>gi|239621484|ref|ZP_04664515.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|239515945|gb|EEQ55812.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           longum subsp. infantis CCUG 52486]
          Length = 698

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 30/243 (12%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
             +  D+ +   +     L   E   +     + V + +    + +         G +  
Sbjct: 376 VNKIDDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTS--GYLTP 433

Query: 218 NGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +G + + ++G  N GKSSL N LA+++ A+V D+ GTTRD +   ++++G      DTAG
Sbjct: 434 SGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAG 493

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFI 325
           I+         E     RT   +E  +L L+L + +        K            + +
Sbjct: 494 IKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLV 553

Query: 326 GTKSD---------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKL 369
             K D         L   +  E+D ++       S+ TG     L   +   L +  +++
Sbjct: 554 FNKWDAMDEFDKQRLERLWNTEFDRVMWAERVNLSAKTGWHTNRLTRAMDKALESWDQRI 613

Query: 370 PFS 372
           P  
Sbjct: 614 PTG 616



 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 17/181 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 264 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 323

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYS 333
           + +E     +  + V  AD ++ + +       + + I           +    K D  +
Sbjct: 324 EGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDDQA 383

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           +     +           IS+  G G+ +L++     L    K   +  PS  R +  + 
Sbjct: 384 SEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTSGYLTPSGLRRVALVG 443

Query: 385 Q 385
           +
Sbjct: 444 R 444


>gi|227547248|ref|ZP_03977297.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227212207|gb|EEI80103.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 709

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 30/243 (12%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
             +  D+ +   +     L   E   +     + V + +    + +         G +  
Sbjct: 387 VNKIDDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTS--GYLTP 444

Query: 218 NGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +G + + ++G  N GKSSL N LA+++ A+V D+ GTTRD +   ++++G      DTAG
Sbjct: 445 SGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAG 504

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFI 325
           I+         E     RT   +E  +L L+L + +        K            + +
Sbjct: 505 IKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLV 564

Query: 326 GTKSD---------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKL 369
             K D         L   +  E+D ++       S+ TG     L   +   L +  +++
Sbjct: 565 FNKWDAMDEFDKQRLERLWNTEFDRVMWAERVNLSAKTGWHTNRLTRAMDKALESWDQRI 624

Query: 370 PFS 372
           P  
Sbjct: 625 PTG 627



 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 17/181 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYS 333
           + +E     +  + V  AD ++ + +       + + I           +    K D  +
Sbjct: 335 EGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDDQA 394

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           +     +           IS+  G G+ +L++     L    K   +  PS  R +  + 
Sbjct: 395 SEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTSGYLTPSGLRRVALVG 454

Query: 385 Q 385
           +
Sbjct: 455 R 455


>gi|227833144|ref|YP_002834851.1| cytidylate kinase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454160|gb|ACP32913.1| cytidylate kinase [Corynebacterium aurimucosum ATCC 700975]
          Length = 528

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 87/230 (37%), Gaps = 20/230 (8%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFL-KNDISSHISQGKLGE--IIRNGYKIVILGH 227
             + + D SE  +      +E       L + +  +      +GE     N   + ++G 
Sbjct: 42  DFDYEFDESEFGEADFGDEEEPAEGDAPLSEEEWEALSHAFGVGEEHTEENLCTVAVVGR 101

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKSSL N    +  A+V D PG TRD ++   D  G    + DT G       +   
Sbjct: 102 PNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVADWNGQRFFVQDTGGWDPNVKGIHAA 161

Query: 288 GIKRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKSDLYSTYTEEY 339
             ++    ++ AD+I+ + +     ++ +    +      +  I +  K D  + Y +  
Sbjct: 162 IARQAEQAMDTADVIVFVVDTKVGITETDAVMARKLQRSEVPVILVSNKFDSETMYADMA 221

Query: 340 DHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +           +S+  G G  +++++I  +   + +    +    +  L
Sbjct: 222 EFYALGLGDPWPVSAQHGRGGADVLDEILRLFPEEPRHSSITSGPRRVAL 271



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 28/221 (12%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
               S +       + ++I     +      I +G + + ++G  N GKSSL N L  ++
Sbjct: 231 PWPVSAQHGRGGADVLDEILRLFPEEPRHSSITSGPRRVALVGKPNVGKSSLLNKLTAEE 290

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENAD 300
            ++V +  GTT D +   + L+  L K  DTAG+R+        E     RT   ++ A+
Sbjct: 291 RSVVDNAAGTTVDPVDSLVQLDQRLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAE 350

Query: 301 LILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST-----YTEEYD------- 340
           + ++L + + +          +        +    K DL           E D       
Sbjct: 351 VCIMLIDASQEVSEQDQRVLNMILEAGKALVIAFNKWDLVDEDRRYYLEREIDENLRHLP 410

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                 IS+ TG  L++L   +   L +  +++     ++ 
Sbjct: 411 WVTRVNISAETGRALQKLEPAMIEALESWDQRVSTGQLNNW 451


>gi|108563245|ref|YP_627561.1| GTP-binding protein EngA [Helicobacter pylori HPAG1]
 gi|122980493|sp|Q1CT35|DER_HELPH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|107837018|gb|ABF84887.1| GTP-binding protein-like protein [Helicobacter pylori HPAG1]
          Length = 461

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 31/214 (14%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNG------YKIVILGHSNAGKSSLFNALAKKDVAI 246
           LN    ++ D+ + I +      +          ++ I+G  N GKSSL NAL KK+ ++
Sbjct: 167 LNLNKIIEQDLDADILESLENNALEEETKEEEIIQVGIIGRVNVGKSSLLNALTKKERSL 226

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILL 304
           V+ + GTT D +   + +    +   DTAGIR    I  +EK  ++RT   +E + + LL
Sbjct: 227 VSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRSKILGIEKYALERTQKALEKSHIALL 286

Query: 305 LKEINSK-----KEISFPKNID---FIFIGTKSDLYSTYTEEY---------------DH 341
           + ++++      ++IS   +      I I  K D+     EE                  
Sbjct: 287 VLDVSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMETLKRKFRFLEYAPVI 346

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
             S      ++E+ +KI  +     K++P S+ +
Sbjct: 347 TTSCLKARHIDEIKHKIIEVYECFSKRIPTSLLN 380



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 28/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERAYAFSSF-----------------GMPKSFNISVSHNRGISALIDAVLSALNLN 170

Query: 394 SLNEKDCGLDII 405
            + E+D   DI+
Sbjct: 171 KIIEQDLDADIL 182


>gi|302383643|ref|YP_003819466.1| ribosome-associated GTPase EngA [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194271|gb|ADL01843.1| ribosome-associated GTPase EngA [Brevundimonas subvibrioides ATCC
           15264]
          Length = 537

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 18/160 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+LFN L  K +A+V D PG TRD    +  +    + + DTAG  +
Sbjct: 3   LKLAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRRYAEGSIGDMDLTLIDTAGYED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            +DD +E    ++T L +E+ DLIL + +             E    ++   I +  K++
Sbjct: 63  VSDDSLESRMREQTELALEDGDLILFMMDAREGVTSLDRIFAERLRKQHKPVILLANKAE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSI 361
              +     +           IS+  GEG+ +L   I+  
Sbjct: 123 SRESGGGVGEAHALGFGEPVAISAEHGEGMADLYAAIRDA 162



 Score = 90.7 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 76/172 (44%), Gaps = 15/172 (8%)

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKN-DISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
            L F E   +     + + +    +++  +   I +    +      +I I+G  NAGKS
Sbjct: 135 ALGFGEPVAISAEHGEGMADLYAAIRDASVDIFIEEIDEPD---KPIRIAIIGRPNAGKS 191

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIK 290
           +L N L  +D  +     G TRD +++D + EG  +++ DTAG+R    +    EK  + 
Sbjct: 192 TLINHLIGEDRLLTGPEAGITRDSISVDWEYEGQNIRLVDTAGMRRKARVQEKLEKLSVA 251

Query: 291 RTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYST 334
            T   +  A++++L+ + ++  ++           +    +++  K DL   
Sbjct: 252 DTIRAITYAEVVVLVMDKDNAFDVQDLQLADLVEREGRALVYVAAKWDLEEN 303


>gi|255525312|ref|ZP_05392252.1| GTP-binding protein Era [Clostridium carboxidivorans P7]
 gi|296188181|ref|ZP_06856573.1| GTP-binding protein Era [Clostridium carboxidivorans P7]
 gi|255510984|gb|EET87284.1| GTP-binding protein Era [Clostridium carboxidivorans P7]
 gi|296047307|gb|EFG86749.1| GTP-binding protein Era [Clostridium carboxidivorans P7]
          Length = 293

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 87/209 (41%), Gaps = 24/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N++  + ++IV+  P TTR+ +   L  + + +   DT GI +  
Sbjct: 7   ITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNNIQTILTEKDFQLVFVDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-- 331
             + +  +K     ++  DLIL L     +         E     N+    +  K D   
Sbjct: 67  HKLGEFMVKIAQDSIKEVDLILFLTNPEDEIGKGDMYILEQLKECNVPVFLVLNKIDENT 126

Query: 332 -----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                         ++      IS+  G+ ++EL   +   +    K  P  + + ++  
Sbjct: 127 QERVAKTLDNYSKVFSFAEIIPISALKGKNVDELKELMVKYMHEGPKYYPEDMITDQQER 186

Query: 381 YHLSQTVRYLEMASLNE---KDCGLDIIA 406
           + +++T+R   +  L++       ++II+
Sbjct: 187 FVVAETIREKALRLLSQEVPHGTAVEIIS 215


>gi|220912306|ref|YP_002487615.1| GTP-binding protein EngA [Arthrobacter chlorophenolicus A6]
 gi|219859184|gb|ACL39526.1| small GTP-binding protein [Arthrobacter chlorophenolicus A6]
          Length = 516

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 91/238 (38%), Gaps = 25/238 (10%)

Query: 149 GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHIS 208
             SG   S   ++    T   +   A +   E E ++  S +  L D     ++  + + 
Sbjct: 6   QTSGHSGSAEYEYTPSGTDQVAERLAAIGDDEAE-LRAASLRAGLEDYE--LDEEDAALL 62

Query: 209 QGKLGEIIRNGYK-----IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
            G+ G+   +G       + I+G  N GKS+L N +  +  A+V D PG TRD +     
Sbjct: 63  SGEYGDEDLDGPVKLDPVLAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSAS 122

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----IS 315
             G    + DT G       +     ++  + VE AD +L + +      +  E    + 
Sbjct: 123 WNGRNFTLVDTGGWEHDARGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEGVMKML 182

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEY---------DHLISSFTGEGLEELINKIKSILSN 364
                  I +  K D ++   +            + +S+  G G+ +L++ +  +L  
Sbjct: 183 RRSKKPVIMVANKVDDFAQEADSAALWGLGFGEPYPVSALHGRGVADLLDHVMDVLPE 240



 Score = 96.5 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 81/206 (39%), Gaps = 30/206 (14%)

Query: 197 LFLKNDISSHISQGKLGE-IIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             L + +   + +    E + R+G   +I ++G  N GKSSL N LA  +  +V +  GT
Sbjct: 228 ADLLDHVMDVLPEFSTVEGVERSGGPRRIALIGRPNVGKSSLLNKLAGTERVVVDNTAGT 287

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINS 310
           TRD +   ++L     +  DTAGIR    + +        RT   +E A++ ++L  ++ 
Sbjct: 288 TRDPVDEFIELGDRTWRFVDTAGIRRRQHMAQGADYYASLRTQAALEKAEVAVVLLAVDE 347

Query: 311 K--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSF 346
                     +++       +    K DL       Y                   IS+ 
Sbjct: 348 VLSEQDVRILQLAIESGRALVLAFNKWDLLDDERRRYLEREIEQDLAHVEWAPRVNISAK 407

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS 372
           TG   + L+  +   L N  +++P  
Sbjct: 408 TGWHKDRLVPALDLALENWDRRIPTG 433


>gi|329946748|ref|ZP_08294160.1| ribosome biogenesis GTPase Der [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526559|gb|EGF53572.1| ribosome biogenesis GTPase Der [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 719

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 89/209 (42%), Gaps = 31/209 (14%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           EVL+ ++ +  ++S+  +    G++ R    + ++G  N GKSSL N++A ++  +V + 
Sbjct: 433 EVLDAVMEVLPEVSAVATAAPEGDLHR----VALVGRPNVGKSSLLNSIAGRERVVVNET 488

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKE 307
            GTTRD +   ++L+G      DTAGIR   +     +   + RT   ++ A+++++L +
Sbjct: 489 AGTTRDPVDEIIELDGRQWVFVDTAGIRRRVKQSRGADYYAVLRTQGAIDKAEVVVVLLD 548

Query: 308 INSK--------KEISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLISSF------ 346
            +           +         + +  K DL     +       E+D    S+      
Sbjct: 549 ASEPISEQDVRVVQQVVDAGRALVLVNNKWDLVDEERQKMLLWEVEHDLAHVSWAPHINL 608

Query: 347 ---TGEGLEELINKIKSILSNKFKKLPFS 372
              TG     L+    + L     ++P  
Sbjct: 609 AARTGWHTNRLVRAFDAALEGWTTRVPTG 637



 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 82/204 (40%), Gaps = 20/204 (9%)

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQG--KLGEIIRNGYKI-VILGHSNAGKSSLFN 237
           EED++  + +E L D    + D++   + G    G+ +  G  +  ++G  N GKS+L N
Sbjct: 241 EEDLRARAMREGLGDYELDEEDLALLDADGGLPAGDSVEPGLPVLAVVGRPNVGKSTLVN 300

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            +  +  A+V D PG TRD ++   +  G    I DT G       ++     +  + VE
Sbjct: 301 RVLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVDVAGLDAAVATQAEVAVE 360

Query: 298 NADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEY---------D 340
            AD +LL+ +       +  +            +    K D  +   +            
Sbjct: 361 MADAVLLVVDAQVGITETDARVVRMLRRSGKPVVLAANKVDSPAQEGDAATLWNLGLGEP 420

Query: 341 HLISSFTGEGLEELINKIKSILSN 364
             +S+  G G  E+++ +  +L  
Sbjct: 421 FPVSALHGRGSGEVLDAVMEVLPE 444


>gi|296454185|ref|YP_003661328.1| small GTP-binding protein [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183616|gb|ADH00498.1| small GTP-binding protein [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 709

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 30/243 (12%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
             +  D+ +   +     L   E   +     + V + +    + +         G +  
Sbjct: 387 VNKIDDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTS--GYLTP 444

Query: 218 NGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +G + + ++G  N GKSSL N LA+++ A+V D+ GTTRD +   ++++G      DTAG
Sbjct: 445 SGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAG 504

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFI 325
           I+         E     RT   +E  +L L+L + +        K            + +
Sbjct: 505 IKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLV 564

Query: 326 GTKSD---------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKL 369
             K D         L   +  E+D ++       S+ TG     L   +   L +  +++
Sbjct: 565 FNKWDAMDEFDKQRLERLWNTEFDRVMWAERVNLSAKTGWHTNRLTRAMDKALESWDQRI 624

Query: 370 PFS 372
           P  
Sbjct: 625 PTG 627



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 17/181 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYS 333
           + +E     +  + V  AD ++ + +       + + I           +    K D  +
Sbjct: 335 EGIESAIASQAQIAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDDQA 394

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           +     +           IS+  G G+ +L++     L    K   +  PS  R +  + 
Sbjct: 395 SEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTSGYLTPSGLRRVALVG 454

Query: 385 Q 385
           +
Sbjct: 455 R 455


>gi|161485602|ref|NP_695919.2| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           longum NCC2705]
 gi|317483249|ref|ZP_07942244.1| ribosome-associated GTPase EngA [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915318|gb|EFV36745.1| ribosome-associated GTPase EngA [Bifidobacterium sp. 12_1_47BFAA]
          Length = 709

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 30/243 (12%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
             +  D+ +   +     L   E   +     + V + +    + +         G +  
Sbjct: 387 VNKIDDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTS--GYLTP 444

Query: 218 NGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +G + + ++G  N GKSSL N LA+++ A+V D+ GTTRD +   ++++G      DTAG
Sbjct: 445 SGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAG 504

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFI 325
           I+         E     RT   +E  +L L+L + +        K            + +
Sbjct: 505 IKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLV 564

Query: 326 GTKSD---------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKL 369
             K D         L   +  E+D ++       S+ TG     L   +   L +  +++
Sbjct: 565 FNKWDAMDEFDKQRLERLWNTEFDRVMWAERVNLSAKTGWHTNRLTRAMDKALESWDQRI 624

Query: 370 PFS 372
           P  
Sbjct: 625 PTG 627



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 17/181 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYS 333
           + +E     +  + V  AD ++ + +       + + I           +    K D  +
Sbjct: 335 EGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDDQA 394

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           +     +           IS+  G G+ +L++     L    K   +  PS  R +  + 
Sbjct: 395 SEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTSGYLTPSGLRRVALVG 454

Query: 385 Q 385
           +
Sbjct: 455 R 455


>gi|220904745|ref|YP_002480057.1| GTP-binding protein EngA [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869044|gb|ACL49379.1| small GTP-binding protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 454

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 12/168 (7%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVT 248
            E  ++I  L  D++  + +    E       ++ +LG  NAGKSSL NAL+ ++  IV+
Sbjct: 160 AEHGHNIRALVEDLADLLPEESSEEPPAPPALRLAMLGRPNAGKSSLINALSGEERMIVS 219

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305
           D+ GTTRD + +     G      DTAG+R   +  D VEK  +         AD+ LL 
Sbjct: 220 DVAGTTRDSVDVRFCRNGKDYVFVDTAGVRRRTKITDSVEKYSVNSAIKSSTKADVTLLT 279

Query: 306 KEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEEYDHLISS 345
            +     S+++         +   F+ +  K DL      +      S
Sbjct: 280 LDAAEGVSQQDKRLMDMLNTRKTPFMVLINKCDLAPRNALDQLKKNIS 327



 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 29/179 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR- 278
           +I+++G  N GKS+LFN L + + AI  D PG TRD +   +  +G     I DT GI  
Sbjct: 7   RIILVGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGVVRRKGLPAFGIVDTGGITL 66

Query: 279 ----------ETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNI 320
                     E     E++ + +T   +++A  +  + +         + ++     K +
Sbjct: 67  DAHAMVVEGPEGIRGFEQDILDQTEAAMKDAAAVAFVVDGRDGLLPLDEHLAAHVRRKGL 126

Query: 321 DFIFIGTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLP 370
             I +  K D      E+              S+  G  +  L+  +  +L  +  + P
Sbjct: 127 PTICVVNKVDGAEREDEQLAEFHILGFPLLAVSAEHGHNIRALVEDLADLLPEESSEEP 185


>gi|189439326|ref|YP_001954407.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           longum DJO10A]
 gi|312132698|ref|YP_004000037.1| cmk [Bifidobacterium longum subsp. longum BBMN68]
 gi|189427761|gb|ACD97909.1| Cytidylate kinase [Bifidobacterium longum DJO10A]
 gi|311773657|gb|ADQ03145.1| Cmk [Bifidobacterium longum subsp. longum BBMN68]
          Length = 709

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 30/243 (12%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
             +  D+ +   +     L   E   +     + V + +    + +         G +  
Sbjct: 387 VNKIDDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTS--GYLTP 444

Query: 218 NGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +G + + ++G  N GKSSL N LA+++ A+V D+ GTTRD +   ++++G      DTAG
Sbjct: 445 SGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAG 504

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFI 325
           I+         E     RT   +E  +L L+L + +        K            + +
Sbjct: 505 IKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLV 564

Query: 326 GTKSD---------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKL 369
             K D         L   +  E+D ++       S+ TG     L   +   L +  +++
Sbjct: 565 FNKWDAMDEFDKQRLERLWNTEFDRVMWAERVNLSAKTGWHTNRLTRAMDKALESWDQRI 624

Query: 370 PFS 372
           P  
Sbjct: 625 PTG 627



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 17/181 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYS 333
           + +E     +  + V  AD ++ + +       + + I           +    K D  +
Sbjct: 335 EGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDDQA 394

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           +     +           IS+  G G+ +L++     L    K   +  PS  R +  + 
Sbjct: 395 SEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTSGYLTPSGLRRVALVG 454

Query: 385 Q 385
           +
Sbjct: 455 R 455


>gi|303239953|ref|ZP_07326475.1| GTP-binding protein Era [Acetivibrio cellulolyticus CD2]
 gi|302592432|gb|EFL62158.1| GTP-binding protein Era [Acetivibrio cellulolyticus CD2]
          Length = 297

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +  + +AI++D P TTR+ +   +  + + +   DT GI +  
Sbjct: 8   ISIVGRPNVGKSTLLNNITGEKIAIMSDKPQTTRNTIKAVITGDEHQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNIDFIFIGTKSDLY 332
           + +    +      +   D++L L E  + K         E           +  K DL 
Sbjct: 68  NKLGDFMVNIAVETLNEVDVVLFLVEAQNLKPGPGDLFIVEQLKNVKSKVFLVINKIDLI 127

Query: 333 ST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                             E    IS+   E  + LI++I  +L    K  P  + + +  
Sbjct: 128 DKSQLLPLISAYKDLMNFEALIPISALKDEKQDPLISEILKVLPEGPKYFPEDMMTDQPE 187

Query: 380 LYHLSQTVR 388
               ++ +R
Sbjct: 188 KLIAAELIR 196


>gi|114798294|ref|YP_759502.1| GTP-binding protein EngA [Hyphomonas neptunium ATCC 15444]
 gi|122942672|sp|Q0C441|DER_HYPNA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|114738468|gb|ABI76593.1| GTP-binding protein EngA [Hyphomonas neptunium ATCC 15444]
          Length = 510

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+LFN L  K +A+V D PG TRD    D  L    + + DTAG   
Sbjct: 3   LKLAIVGRPNVGKSTLFNRLVGKKIALVDDQPGVTRDRKMADGRLASLPLSLIDTAGFDN 62

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
             DD +E     +T   +  ADL+L L +          +   +    NI  +    K++
Sbjct: 63  VNDDSLEARMRAQTEAAIAEADLVLFLVDARVGVTPEDETFAGLLRKANIPVVLAANKAE 122

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
             +     +D            S+  GEG+ EL   I++ L
Sbjct: 123 GRAGEAGVFDAFRLGFGEPVGLSAEHGEGMAELYESIRNAL 163



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 105/269 (39%), Gaps = 42/269 (15%)

Query: 153 ELSSLYGQWIDKL---THIRSFIEADLDFSEE--EDVQNFSSKEVLNDILFLKNDISSHI 207
            ++ LY    + L    + R+  EA+ D+     ED+    +   + D     +D+ + I
Sbjct: 151 GMAELYESIRNALGPEAYERALEEAEPDYERGAGEDILEKLAHIDIEDTTLSDDDLVAAI 210

Query: 208 SQGKLGEIIRN-------GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
               +   +           ++ I+G  NAGKS+L N L + D  +     G TRD +T+
Sbjct: 211 EAADIDADVAEAPVQSDRPIRLAIVGRPNAGKSTLINQLLQSDRMLTGPEAGITRDSITV 270

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN---ADLILLLKEINSK------ 311
           + + EG  +++ DTAG+R  + + E+     T   + +   AD++ L+ + +        
Sbjct: 271 NWEWEGRQIRLVDTAGLRRKNKVQERLERMSTAETIRSLKYADIVALVMDAHEAMEKQDL 330

Query: 312 --KEISFPKNIDFIFIGTKSD------------------LYSTYTEEYDHLISSFTGEGL 351
              +++  +    + + +K D                  L           +S  TG  +
Sbjct: 331 QIADLALREGRGVVLVISKWDTVEDTDGAARHIRDLANRLMPNAGGAPVVFLSGLTGRNI 390

Query: 352 EELINKIKSILSNKFKKL-PFSIPSHKRH 379
           E+L+  +  +  +   +     +    RH
Sbjct: 391 EKLMPAVVKVYKDWTARAKTGDLNRWLRH 419


>gi|329943260|ref|ZP_08292034.1| small GTP-binding domain protein [Chlamydophila psittaci Cal10]
 gi|332287839|ref|YP_004422740.1| ribosome-associated GTPase [Chlamydophila psittaci 6BC]
 gi|313848411|emb|CBY17415.1| putative GTP-binding protein [Chlamydophila psittaci RD1]
 gi|325506575|gb|ADZ18213.1| ribosome-associated GTPase [Chlamydophila psittaci 6BC]
 gi|328814807|gb|EGF84797.1| small GTP-binding domain protein [Chlamydophila psittaci Cal10]
 gi|328915100|gb|AEB55933.1| GTP-binding protein engA [Chlamydophila psittaci 6BC]
          Length = 474

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 97/258 (37%), Gaps = 29/258 (11%)

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
                  I ++  + +  E   +  EE   +     E L    FL  D  +  S   +  
Sbjct: 148 DKHIDNLIHRIKTLANVPEVVEEPVEEIHEEEVPVMESLETEEFL-ADYENEDSDFSVSS 206

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +     KI ++G  N GKSS+ NAL  ++  I+ +IPGTTRD + I            DT
Sbjct: 207 VEDKPLKIALIGRPNVGKSSIINALLNEERCIIDNIPGTTRDNIDILYSYNDRSYLFIDT 266

Query: 275 AGIRE---TDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFP--KNIDFI 323
           AG+R+     + +E     RT   +  AD+ LL+ +         K+ +S    +    I
Sbjct: 267 AGLRKMKSVKNSIEWISSSRTEKAIARADICLLVIDATHHLSSYDKRILSLISKQKKPHI 326

Query: 324 FIGTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFK 367
            +  K DL      E+                   IS+ T   L ++ + I  +      
Sbjct: 327 ILVNKWDLIQGVRMEHYIRDLRATDVYIGQSKILCISAATKRNLRQIFSSIDELHKTISN 386

Query: 368 KLPFSIPSHKRHLYHLSQ 385
           K+P  +  +K     L +
Sbjct: 387 KVPTPVV-NKTLALALQK 403



 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 18/162 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-R 278
            +I ILG  N GKSSLFN + K+ +AIV    GTTRD L  ++   G  V++ DT G+ +
Sbjct: 2   LRIAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWGIPVQVIDTGGVDK 61

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD 330
           +++D  +K   K+       AD++LL+ +I    ++ +    K         I +  K+D
Sbjct: 62  DSEDHFQKHIYKQALAGANEADILLLVIDIRCGITELDAEIAKQLLCLKKPLILVANKAD 121

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
                   ++            S+   + ++ LI++IK++ +
Sbjct: 122 TLKDEYRIHELYKIGISDILAVSASHDKHIDNLIHRIKTLAN 163


>gi|300114862|ref|YP_003761437.1| ribosome-associated GTPase EngA [Nitrosococcus watsonii C-113]
 gi|299540799|gb|ADJ29116.1| ribosome-associated GTPase EngA [Nitrosococcus watsonii C-113]
          Length = 464

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 78/197 (39%), Gaps = 27/197 (13%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++  +  EI   G ++ ++G  N GKS+L N +  ++  + ++IPGTTRD ++I     G
Sbjct: 164 VAGREESEIQAKGLQLAVIGRPNVGKSTLVNRILGEERVLSSEIPGTTRDSISIPFRHHG 223

Query: 267 YLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEIS 315
               + DTAGIR      D VEK  + ++   +  A +++L+ + +            + 
Sbjct: 224 RDYTLVDTAGIRRRSRILDRVEKFSVIQSLQSIAIAQVVILVIDAHDSVVEQDLHLAGVI 283

Query: 316 FPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGEGLEELINKIK 359
                  +    K D       +                  H IS+  G G+ +L   I 
Sbjct: 284 LESGKGVVIAVNKWDGLPLEQRQRVKKDLDRRLPFLVFARIHFISALHGSGVGDLFPSID 343

Query: 360 SILSNKFKKLPFSIPSH 376
               +   +LP    + 
Sbjct: 344 EAYQSANSQLPTGELNR 360



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 13/140 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD              + DT GI E +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADQPGVTRDRQYGLAYCGEQSFFVVDTGGIMEQE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLYS 333
             +      +  L +E AD+I  L +         +EI+            +  K++   
Sbjct: 65  SEIGSLMRGQAQLAIEEADVIFFLVDAREGLSSLDEEIAEWLRCTEKPLKLVINKAE--- 121

Query: 334 TYTEEYDHLISSFTGEGLEE 353
               + D + S F   GL E
Sbjct: 122 --GRDEDLVASEFYCLGLGE 139


>gi|213692049|ref|YP_002322635.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523510|gb|ACJ52257.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320458161|dbj|BAJ68782.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 709

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 98/263 (37%), Gaps = 30/263 (11%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            T+ +    +      +     +  D+ +   +     L   E   +     + V + + 
Sbjct: 367 TTDERIVKMLRAAGKPIVLAVNKIDDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLD 426

Query: 198 FLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
              + +         G +  +G + + ++G  N GKSSL N LA+++ A+V D+ GTTRD
Sbjct: 427 VALDKLKQAEKTS--GYLTPSGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRD 484

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKE 313
            +   ++++G      DTAGI+         E     RT   +E  +L L+L + +    
Sbjct: 485 PVDEIVNIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVS 544

Query: 314 ISFPK--------NIDFIFIGTKSD---------LYSTYTEEYDHLI-------SSFTGE 349
               K            + +  K D         L   +  E+D ++       S+ TG 
Sbjct: 545 DQDLKVMSTAVDAGRAIVLVFNKWDAMDEFDKQRLERLWNTEFDRVMWAERVNLSAKTGW 604

Query: 350 GLEELINKIKSILSNKFKKLPFS 372
               L   +   L +  +++P  
Sbjct: 605 HTNRLTRAMDKALESWDQRIPTG 627



 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 17/181 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAIVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYS 333
           + +E     +  + V  AD ++ + +       + + I           +    K D  +
Sbjct: 335 EGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPIVLAVNKIDDQA 394

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           +     +           IS+  G G+ +L++     L    K   +  PS  R +  + 
Sbjct: 395 SEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTSGYLTPSGLRRVALVG 454

Query: 385 Q 385
           +
Sbjct: 455 R 455


>gi|122701597|emb|CAL88188.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERVYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|254487934|ref|ZP_05101139.1| GTP-binding protein [Roseobacter sp. GAI101]
 gi|214044803|gb|EEB85441.1| GTP-binding protein [Roseobacter sp. GAI101]
          Length = 491

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 26/201 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLADLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK-- 328
            TDD ++    + T   V+ AD+ L + +             +I   K+   I    K  
Sbjct: 63  VTDDSLQGRMRRLTERAVDMADICLFMIDARVGVTPSDLVFADILRKKSAHVILAANKGE 122

Query: 329 -----SDLYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                + +   Y+        +S+  GEGL +L   +  I     +++    P     L 
Sbjct: 123 GRAADAGVLEAYSLGLGEPIRMSAEHGEGLNDLYTHLMPIADGFSERVDTDTPETDVDLT 182

Query: 382 HLSQTVRYLEMASLNEKDCGL 402
                    E A L ++D  +
Sbjct: 183 E--------EEAELGDEDAPV 195



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 99/265 (37%), Gaps = 36/265 (13%)

Query: 152 GELSSLYGQWIDKLTHIRSFIEADLD-FSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210
           GE   +  +  + L  + + +    D FSE  D     +   L +      D  + +   
Sbjct: 139 GEPIRMSAEHGEGLNDLYTHLMPIADGFSERVDTDTPETDVDLTEEEAELGDEDAPVPVP 198

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              + ++    + ++G  NAGKS+L N +  +D  +     G TRD +++    EG  ++
Sbjct: 199 TNAKPLQ----VAVVGRPNAGKSTLINQIMGEDRLLTGPEAGITRDAISLRTVWEGVPMR 254

Query: 271 ISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKN 319
           I DTAG+R+   I    EK  +      V+ A+++++L +     E        ++  + 
Sbjct: 255 IFDTAGMRKKAKIQEKLEKLSVSDGLRAVKFAEVVVVLLDAEIPFEQQDLRIADLAEREG 314

Query: 320 IDFIFIGTKSD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
              +    K D                  L           +S+ TG GL+ L N I   
Sbjct: 315 RAVVVAVNKWDLETDKQGKLKDLRESFERLLPQLKGAPLVTVSAKTGRGLDRLHNAIMRA 374

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQT 386
                +++  +     R L  + + 
Sbjct: 375 YDVWNRRV--TTAQLNRWLAGMMEA 397


>gi|210623874|ref|ZP_03294109.1| hypothetical protein CLOHIR_02060 [Clostridium hiranonis DSM 13275]
 gi|210153300|gb|EEA84306.1| hypothetical protein CLOHIR_02060 [Clostridium hiranonis DSM 13275]
          Length = 299

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D P TTR+ +      +   V   DT GI +  
Sbjct: 7   VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDDESQVVFLDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           + + +  +K       N DLIL + + + K         E         + +  K D   
Sbjct: 67  NKLGEIMVKAATDAFSNVDLILFVVDSSRKIGPGDRRIMEDLRGSKTPIVLVINKIDQIE 126

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E +D                IS+  G+ ++ LIN IK  L    K  P  + + +  
Sbjct: 127 DKDELFDIIKMYDDEKMFKEIVPISALKGKNVKTLINVIKEDLEEGPKYFPDYMVTDQPE 186

Query: 380 LYHLSQTVR 388
              +++ +R
Sbjct: 187 RVLIAELIR 195


>gi|122701635|emb|CAL88207.1| GTPase [Helicobacter pylori]
 gi|122701665|emb|CAL88222.1| GTPase [Helicobacter pylori]
 gi|122701667|emb|CAL88223.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKITLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       +S     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNVSVSHNRGISALIDAILSALN 167


>gi|260173329|ref|ZP_05759741.1| putative GTP-binding protein, putative GTPase [Bacteroides sp. D2]
 gi|299149447|ref|ZP_07042504.1| GTP-binding protein [Bacteroides sp. 3_1_23]
 gi|315921602|ref|ZP_07917842.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|298512634|gb|EFI36526.1| GTP-binding protein [Bacteroides sp. 3_1_23]
 gi|313695477|gb|EFS32312.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 396

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V+D PGTT D+++  ++++G       DT G
Sbjct: 10  NRLHIALFGRRNSGKSSLINALTGQDTALVSDTPGTTTDLVSKAMEIQGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKE---ISFPKNIDFIFIGTKSD 330
             +  ++ E   I RT   +E  D+ LLL      + +KE   +   KNI  I +  K D
Sbjct: 70  FDDEGELGELR-ISRTLKAIEKTDIALLLCGDTTFSHEKEMLALLKEKNIPVIPVLNKID 128

Query: 331 L------YSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +       +TY EE       LIS+    G+E++   I   L + F +   +
Sbjct: 129 IRENSDSLATYIEEECKIRPLLISAKEKTGIEQIRQAILEKLPSDFGQQSIT 180


>gi|269127039|ref|YP_003300409.1| small GTP-binding protein [Thermomonospora curvata DSM 43183]
 gi|268311997|gb|ACY98371.1| small GTP-binding protein [Thermomonospora curvata DSM 43183]
          Length = 463

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 19/190 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
              R    + ++G  N GKS+L N +  +  A+V D+PG TRD ++ + D  G  + I D
Sbjct: 19  RQDRVPPVVAVVGRPNVGKSTLVNRVLGRREAVVEDVPGVTRDRVSYEADWSGRRLTIVD 78

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFI 325
           T G       +     ++  L VE AD++L + +          +  +I        + +
Sbjct: 79  TGGWLPDATGLAAAVAEQARLAVELADVVLFVVDATVGATDVDEAVVDILRRSGKPVLLV 138

Query: 326 GTKSD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
             K D          L+S    E  H +S+  G G  +L++ + + L         +   
Sbjct: 139 ANKVDDAATELDAAALWSLGIGE-PHPVSALHGRGSGDLLDAVLAALPEPPPPTEDAAGG 197

Query: 376 HKRHLYHLSQ 385
             R +  L +
Sbjct: 198 GPRRVALLGR 207



 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  N GKSSL N LA ++  +V D+ GTTRD +   ++L G   +  DTAGIR  
Sbjct: 201 RVALLGRPNVGKSSLLNKLAGENRVVVDDVAGTTRDPVDELIELGGRTWRFIDTAGIRRR 260

Query: 281 DDIVE---KEGIKRTFLEVENADLILLLKEIN---SKKEIS-----FPKNIDFIFIGTKS 329
               +        RT   +E A++ ++L + +   +++++             +    K 
Sbjct: 261 YRESQGADFYATLRTQSALERAEVAVVLIDASQPLAEQDLRIISMVIEAGRALVIAYNKW 320

Query: 330 DLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL       Y                   IS+ TG  +++L+  + + L+    ++P +
Sbjct: 321 DLLDEERRHYLEREIDRQLHNARWAPRVNISALTGRHVDKLVPALDTALAGWGSRVPTA 379


>gi|322691264|ref|YP_004220834.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456120|dbj|BAJ66742.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 709

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 30/243 (12%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
             +  D+ +   +     L   E   +     + V + +    + +         G +  
Sbjct: 387 VNKIDDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTS--GYLTP 444

Query: 218 NGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +G + + ++G  N GKSSL N LA+++ A+V D+ GTTRD +   ++++G      DTAG
Sbjct: 445 SGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAG 504

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFI 325
           I+         E     RT   +E  +L L+L + +        K            + +
Sbjct: 505 IKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLV 564

Query: 326 GTKSD---------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKL 369
             K D         L   +  E+D ++       S+ TG     L   +   L +  +++
Sbjct: 565 FNKWDAMDEFDKQRLERLWNTEFDRVMWAERVNLSAKTGWHTNRLTRAMDKALESWDQRI 624

Query: 370 PFS 372
           P  
Sbjct: 625 PTG 627



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 17/181 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYS 333
           + +E     +  + V  AD ++ + +       + + I           +    K D  +
Sbjct: 335 EGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDDQA 394

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           +     +           IS+  G G+ +L++     L    K   +  PS  R +  + 
Sbjct: 395 SEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTSGYLTPSGLRRVALVG 454

Query: 385 Q 385
           +
Sbjct: 455 R 455


>gi|91977473|ref|YP_570132.1| GTP-binding protein EngA [Rhodopseudomonas palustris BisB5]
 gi|123748964|sp|Q135K8|DER_RHOPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|91683929|gb|ABE40231.1| Small GTP-binding protein domain [Rhodopseudomonas palustris BisB5]
          Length = 460

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 113/296 (38%), Gaps = 53/296 (17%)

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
            +F+RRA +   +   ++E  A  I +       L      G+   +  +  + L+ +  
Sbjct: 104 ADFARRANKPVVLVANKSEGKAGEIGAMESYALGL------GDPVQISAEHGEGLSELYD 157

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            + A +   + E   +               +I     +    +  +   ++ I+G  NA
Sbjct: 158 ALRALMPEPDVELEDD--------------EEIDGLTEE----DFSKRPIRVAIVGRPNA 199

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKE 287
           GKS+  N L  +D  + +   GTTRD + ++++ +G   +I DTAG+R    I    EK 
Sbjct: 200 GKSTFINRLLGEDRLLTSPEAGTTRDSIAVEVNWKGRDFRIFDTAGLRRRSRIEEKLEKL 259

Query: 288 GIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--------FIGTKSDL-------Y 332
            +      V  A++++L+ +  ++ E    +  D I            K DL        
Sbjct: 260 SVADALRAVRFAEVVVLMMDSQNRFEEQDLRIADLIEREGRALVIAVNKWDLVERQGGQI 319

Query: 333 STYTEEYDHLISSFT-----------GEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +    + DH +               GEG++ ++  I+   +    ++P +  +  
Sbjct: 320 AQLRTDADHWLPQIKGVPIVATSGMLGEGVDRMMEAIQDAYAVWNTRVPTAALNRW 375



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 18/171 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +   I+G  N GKS+LFN L  + +A+V D PG TRD    +  L      I DTAG+ E
Sbjct: 3   FTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGEGRLGDLEFTIIDTAGLDE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                      ++T   +E AD ++ + +  +          + +   N   + +  KS+
Sbjct: 63  GAKGSLTARMQQQTETAIELADALMFVFDARAGLTPNDRAFADFARRANKPVVLVANKSE 122

Query: 331 LYS---------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             +                  IS+  GEGL EL + +++++     +L   
Sbjct: 123 GKAGEIGAMESYALGLGDPVQISAEHGEGLSELYDALRALMPEPDVELEDD 173


>gi|229817644|ref|ZP_04447926.1| hypothetical protein BIFANG_02914 [Bifidobacterium angulatum DSM
           20098]
 gi|229785433|gb|EEP21547.1| hypothetical protein BIFANG_02914 [Bifidobacterium angulatum DSM
           20098]
          Length = 709

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 137/413 (33%), Gaps = 76/413 (18%)

Query: 49  SLRYFFGLDGRILDKGLLI-----VFPSPE------------SFTGEDSAE------FHV 85
            L+    LD   +D+ ++       F                S  GED +E         
Sbjct: 43  CLKQGIDLDAEQIDERVVTETVGEFFTGDHFDISVDPDKPAVSADGEDISEAIRSSEVST 102

Query: 86  H----GGIAVVNGILEELAKMPNLRLANPGEFSR-RAFENGKIDLLEAES----LADLIS 136
           H      I  V  +L    +    R  +   FS          D+    +    +  L++
Sbjct: 103 HVSKVSNIIPVRNVLIAAQRAYIAREESADSFSGGLGVVAEGRDITTVVAPDAEVRVLLT 162

Query: 137 SETE-MQRRLSMEGMSG----------ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +  E  Q R S +  +G           + S    ++     + +   +D+DF    DV 
Sbjct: 163 AREEVRQARRSGQSTAGVGAEDVAARDRMDSKVTSFMTAADGVTTVDNSDMDFEHTLDVL 222

Query: 186 NFSSKEVLNDIL-----------FLKNDISSHISQGKLGEIIRNGY-----KIVILGHSN 229
               +  + +              L     + IS     +   NG       + I+G  N
Sbjct: 223 IDMVENAIEEQEYERYAANLEDYELDEGDEALISNTNRDDSSDNGKGKSVGVLAIVGRPN 282

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKSSL N +    VA+V D PG TRD ++ D +  G   K+ DT G     + ++    
Sbjct: 283 VGKSSLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEVDVEGIDSAIA 342

Query: 290 KRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH 341
            +  + V  AD ++L+ +      N+++ I                K D   +     + 
Sbjct: 343 SQAEVAVNLADAVVLVVDGQVGLTNTEERIVKMLRASGKPVTLAVNKIDDRESEYLAAEF 402

Query: 342 LI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
                      S+  G G+ EL++     L    K   +  PSH R +  + +
Sbjct: 403 WKLGLGEPYAVSAMHGRGVGELLDAAIDSLKKAEKTSGYLTPSHLRRVALVGR 455



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 106/297 (35%), Gaps = 51/297 (17%)

Query: 126 LEAESLADLISSETEMQRRLS---------MEGMSGELSSLYGQWIDKLTHIRSFIEADL 176
           ++ E +   I+S+ E+   L+           G++     +            +     +
Sbjct: 332 VDVEGIDSAIASQAEVAVNLADAVVLVVDGQVGLTNTEERIVKMLRAS-GKPVTLAVNKI 390

Query: 177 DFSEEEDVQNFSSKEVLNDILFLK--------NDISSHISQGKLGEIIRNGY------KI 222
           D  E E +     K  L +   +           + + I   K  E            ++
Sbjct: 391 DDRESEYLAAEFWKLGLGEPYAVSAMHGRGVGELLDAAIDSLKKAEKTSGYLTPSHLRRV 450

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G  N GKSSL N LA ++  +V D+ GTTRD +   + ++G      DTAGI+    
Sbjct: 451 ALVGRPNVGKSSLLNQLANEERTVVNDLAGTTRDPVDEIVSMDGEDWLFIDTAGIKRRQH 510

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTKSD- 330
                E     RT   +E  +L L+L + +   S +++     +       + +  K D 
Sbjct: 511 KLKGAEYYSSLRTQAAIERCELALVLFDASVPISDQDLKVMSSAVDAGRAIVLVFNKWDA 570

Query: 331 --------LYSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   L   +  E+D         IS+ TG     L   ++  L +   ++P  
Sbjct: 571 MDEFDKQRLERLWATEFDRVTWAQRVNISAKTGWHTNRLTRAMREALQSWDTRVPTG 627


>gi|319442278|ref|ZP_07991434.1| bifunctional cytidylate kinase/GTPase Der [Corynebacterium
           variabile DSM 44702]
          Length = 567

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 84/217 (38%), Gaps = 27/217 (12%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D    S++        L   ++S     +   I+    ++ ++G  N GKSSL N +  +
Sbjct: 266 DPYPVSAQHGRGAADVLDQVLASFPETPRETSIVAGPRRVALVGRPNVGKSSLLNKITGE 325

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENA 299
           D ++V ++ GTT D +   ++LE  + +  DTAGIR   +T    E     RT   +++A
Sbjct: 326 DRSVVDNVAGTTVDPVDSVVELEQQMWRFVDTAGIRKKTKTARGHEFYASLRTRAAIDSA 385

Query: 300 DLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEE------------- 338
           ++ + L + +            +        +    K DL      E             
Sbjct: 386 EVAIFLVDASEPIAEQDQRVLRMILDSGRALVVAYNKWDLVDEDRREDLEREIDQQLAHV 445

Query: 339 ---YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  IS+ TG  L+ L   +   L +  +++P  
Sbjct: 446 PWARRVNISAKTGRALQRLEPAMIEALESWDQRIPTG 482



 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 19/222 (8%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSL 235
           D     D ++F  +    +    +  + +        E  R     + I+G  N GKS+L
Sbjct: 87  DVDGSMDAEDFDLRTGAGEDTDWEA-VEAAFGVLGDDEAEREALCTVAIVGRPNVGKSTL 145

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N    +  A+V D PG TRD ++   D  G    + DT G       +     ++    
Sbjct: 146 VNRFIGRREAVVEDFPGVTRDRISYIGDWGGRRFWVQDTGGWDPDAKGIHGAIARQAETA 205

Query: 296 VENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL----- 342
           +  AD+I+ + +    I +  EI   +     I  + +  K D  S Y +  +       
Sbjct: 206 MATADVIVFVVDTKVGITATDEIIARRLQRSEIPVVLVANKFDSDSQYGDMAEFWSLGLG 265

Query: 343 ----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               +S+  G G  ++++++ +      ++        +  L
Sbjct: 266 DPYPVSAQHGRGAADVLDQVLASFPETPRETSIVAGPRRVAL 307


>gi|188527319|ref|YP_001910006.1| GTP-binding protein EngA [Helicobacter pylori Shi470]
 gi|238691915|sp|B2USZ4|DER_HELPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|188143559|gb|ACD47976.1| GTP-binding protein EngA [Helicobacter pylori Shi470]
          Length = 461

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 25/180 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKSD 330
             I  +EK  ++RT   +E + + LL+ ++++      ++IS   +      I I  K D
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +     EE                    S      ++E+ +KI  +     K++P S+ +
Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPIITTSCLKTHHIDEIKHKIIEVYECFSKRIPTSLLN 380



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 28/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L++ 
Sbjct: 128 DKEKERAYAFSSF-----------------GMPKSFNISVSHNRGISTLIDAILSALDLN 170

Query: 394 SLNEKDCGLDII 405
            + E+D   DI+
Sbjct: 171 QIIEQDLDADIL 182


>gi|122701581|emb|CAL88180.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                 ++S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYVFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|322689198|ref|YP_004208932.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F]
 gi|320460534|dbj|BAJ71154.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F]
          Length = 709

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 30/243 (12%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
             +  D+ +   +     L   E   +     + V + +    + +         G +  
Sbjct: 387 VNKIDDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTS--GYLTP 444

Query: 218 NGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +G + + ++G  N GKSSL N LA+++ A+V D+ GTTRD +   ++++G      DTAG
Sbjct: 445 SGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAG 504

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFI 325
           I+         E     RT   +E  +L L+L + +        K            + +
Sbjct: 505 IKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLV 564

Query: 326 GTKSD---------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKL 369
             K D         L   +  E+D ++       S+ TG     L   +   L +  +++
Sbjct: 565 FNKWDAMDEFDKQRLERLWNTEFDRVMWAERVNLSAKTGWHTNRLTRAMDKALESWDQRI 624

Query: 370 PFS 372
           P  
Sbjct: 625 PTG 627



 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 17/181 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYS 333
           + +E     +  + V  AD ++ + +       + + I           +    K D  +
Sbjct: 335 EGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDDQA 394

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           +     +           IS+  G G+ +L++     L    K   +  PS  R +  + 
Sbjct: 395 SEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTSGYLTPSGLRRVALVG 454

Query: 385 Q 385
           +
Sbjct: 455 R 455


>gi|292492503|ref|YP_003527942.1| small GTP-binding protein [Nitrosococcus halophilus Nc4]
 gi|291581098|gb|ADE15555.1| small GTP-binding protein [Nitrosococcus halophilus Nc4]
          Length = 464

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 83/219 (37%), Gaps = 34/219 (15%)

Query: 199 LKNDISSHISQGKLGE--IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           L  D+S+ +      E  I   G +  ++G  N GKS+L N L  ++  +  + PGTTRD
Sbjct: 154 LLQDLSTLLPLEGKEEAGIQARGLQFAVVGRPNVGKSTLVNRLLGEERVLSFEAPGTTRD 213

Query: 257 VLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            + I    +G    + DTAGIR      D++EK  I +T   +E A +++L+ +      
Sbjct: 214 SIAIPFCHQGQDYTLVDTAGIRRRSKILDMLEKFSIAKTLEAIEAAQVVILVIDAREGVV 273

Query: 312 ------KEISFPKNIDFIFIGTKSDLYST----------------YTEEYDHLISSFTGE 349
                   +        +    K D  S+                      H IS+  G 
Sbjct: 274 EQDLHLAGLILESGKAVVIAVNKWDGLSSDQRRKVKADLDRRLPFLDFARVHFISALHGS 333

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           G+ EL   I     +    LP +  +       L+  V 
Sbjct: 334 GVGELFPSIDKAYRSANCHLPTAELN-----QALAAAVE 367



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   A+V D PG TRD              + DT GI E +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRSRDALVADQPGVTRDRKYGIARYGEQSFLVVDTGGITEQE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             V +    +  L +E AD+IL L +             E           +  K++   
Sbjct: 65  SGVGELMRVQAQLAIEEADIILFLVDGREGLSALDETIAEQLRRAQKPLKLVINKTEGRD 124

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKL 369
                 +            S+  G+G+  L+  + ++L  + K+ 
Sbjct: 125 QELVASEFYRLGLGEPATISAQQGQGVGGLLQDLSTLLPLEGKEE 169


>gi|122700853|emb|CAL88015.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISTLIDAILNALN 167


>gi|310287469|ref|YP_003938727.1| GTP-binding protein [Bifidobacterium bifidum S17]
 gi|309251405|gb|ADO53153.1| GTP-binding protein [Bifidobacterium bifidum S17]
          Length = 711

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 134/415 (32%), Gaps = 78/415 (18%)

Query: 49  SLRYFFGLDGRILDK-----GLLIVFPSPE----------SFT--GEDSAE--------- 82
            L     LDG  +D+      +   F              S T  GED +E         
Sbjct: 43  CLHQGIDLDGDQVDEQQITEAVAEFFTGDHFDIGVDPDHPSITADGEDISEAIRSSEVSS 102

Query: 83  -FHVHGGIAVVNGILEELAKMPNLRLANPGEFSR-RAFENGKIDLLEAES----LADLIS 136
                  +  V  +L    +    R +    FS  R       D+    +    +  L++
Sbjct: 103 HVSKVSNVIPVRHVLIAAQRAYIARESAADSFSLGRGIVAEGRDVTTVVAPDAEVRVLLT 162

Query: 137 SETE--MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           +  E    RR         + S      D+     +      D     D  +   ++ L+
Sbjct: 163 AREEVRQARRTGQAVAGAGVGSEDVAARDRADSKVTSFLTAADGVTTVDNSDMDFQQTLD 222

Query: 195 DILFLKNDI----------------------SSHISQGKLGEIIRNGYK-----IVILGH 227
            ++ L  D                          I+  + G    +        + ++G 
Sbjct: 223 VLITLVADAVEVQEYEQYAANLSDYELDEGDEQIIAGSRYGIEDESPAPKAVGVLAVVGR 282

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     + +E  
Sbjct: 283 PNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWSGTEFKLVDTGGWEADVEGIESA 342

Query: 288 GIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSD--LYSTYTE 337
              +  + V+ +D ++L+ +      ++ + I                K D       T 
Sbjct: 343 IASQAQIAVQLSDAVILVVDGHVGLTDTDERIVKMLRASGKPVTLAVNKVDDGASEYLTA 402

Query: 338 EY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           E+        + IS+  G G+ +L++     L    K   F  P+H R +  + +
Sbjct: 403 EFWKLGMGEPYGISAMHGRGVGDLLDAALDSLRKADKTSGFLTPTHLRRVALVGR 457



 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA +  A+V D+ GTTRD +   +D++G      DTAGI+  
Sbjct: 451 RVALVGRPNVGKSSLLNQLAGEQRAVVNDLAGTTRDPVDETIDIDGEDWLFIDTAGIKRR 510

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKS 329
              V   +     RT   +E ++L L+L + +        K            + +  K 
Sbjct: 511 LHKVSGADYYSSLRTQAAIERSELALVLFDSSQPISDQDLKVMSQAVDAGRAVVLVFNKW 570

Query: 330 DLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL   +  +                    +S+ TG     L + +++ L +  K++P  
Sbjct: 571 DLMDDFGRQRLERLWKTEFNRVTWAQRVNLSAKTGWHTNRLADAMRNALESWDKRIPTG 629


>gi|259419101|ref|ZP_05743018.1| ribosome-associated GTPase EngA [Silicibacter sp. TrichCH4B]
 gi|259345323|gb|EEW57177.1| ribosome-associated GTPase EngA [Silicibacter sp. TrichCH4B]
          Length = 492

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 18/157 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + D+AG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDSAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ +E    + T   VE AD+ L + +  +          EI   K+   I    KS+
Sbjct: 63  ATDNSLEGRMRRLTERAVEMADVCLFIIDARAGVTPTDEMFAEILRKKSAHVILAANKSE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKI 358
             +      +           +S   GEGL +L +++
Sbjct: 123 GSAADAGVIEAYGLGLGEPIRMSGEHGEGLNDLYSEL 159



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 78/191 (40%), Gaps = 29/191 (15%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +    ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D  G  ++I DTA
Sbjct: 203 MEKPLQVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLKIDWSGTPMRIFDTA 262

Query: 276 GIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIF 324
           G+R+   +    EK  +      V+ A+++++L +     E        ++  +    + 
Sbjct: 263 GMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVVV 322

Query: 325 IGTKSDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNKF 366
              K D+     E+                      +S+ TG GL+ L   I        
Sbjct: 323 AVNKWDIEDEKQEKLKALKEAFERLLPQLRGAPLVTVSAKTGRGLDRLHAAIMKAHDVWN 382

Query: 367 KKLPFSIPSHK 377
           +++P +  +  
Sbjct: 383 RRVPTAALNRW 393


>gi|239500761|ref|ZP_04660071.1| GTP-binding protein EngA [Acinetobacter baumannii AB900]
          Length = 469

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 110/277 (39%), Gaps = 36/277 (12%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 73  EQSKTAINEADIIIFVVDARAGLLASDEQIARELRTL-GKKIYLVANKVDGVHAEAALVE 131

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
              L   E   V     + V   +  +  DI     +         G ++ I+G  N GK
Sbjct: 132 FYKLGMGEPLQVAASHGRGVQQMLEDVLQDIPE--DESPEEHDKDTGLRLAIIGRPNVGK 189

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGI 289
           S+L N L  +D  +  D PGTTRD + I  + EG    + DTAG+R     D+++EK  I
Sbjct: 190 STLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVRRKGKVDEMIEKFSI 249

Query: 290 KRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEE--- 338
            +T   +++A +++++ +      ++++     +       +    K D  S Y  +   
Sbjct: 250 VKTLQAMKDAHVVVVVVDAREGIVEQDLHLIGYALEAGRAMVIAINKWDNMSEYDRKQCK 309

Query: 339 -------------YDHLISSFTGEGLEELINKIKSIL 362
                          HLIS+  G G+ EL   I    
Sbjct: 310 LDVERRFDFIPWARIHLISALHGTGVGELYPSIHRAY 346



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E++
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGESE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
             ++    +++   +  AD+I+ + +  +    S  +              +  K D
Sbjct: 65  GGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVD 121


>gi|152993507|ref|YP_001359228.1| GTP-binding protein EngA [Sulfurovum sp. NBC37-1]
 gi|151425368|dbj|BAF72871.1| GTP-binding protein, Era/ThdF family [Sulfurovum sp. NBC37-1]
          Length = 467

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 33/232 (14%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
              +++E  +   EE+     + ++ ++    +  DI+S   +        N   + I+G
Sbjct: 157 DFYAWLEQYIPAVEEKKPLELT-EDEIDPFEEIVRDINSTAEEAD------NKISVAIIG 209

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--V 284
             N GKSSL NAL  ++ ++V+D+ GTT D +   ++   Y +   DTAGIR+   I  +
Sbjct: 210 RVNTGKSSLLNALLGEERSVVSDVAGTTIDPIDETIEHNDYEITFVDTAGIRKRSKIVGI 269

Query: 285 EKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFI--FIGTKSDLYSTYT 336
           EK  + RT   +E AD+ LL+ +         ++     +        +  K D+    T
Sbjct: 270 EKYALGRTEAMLEKADIALLIIDATVGVTELDERVAGLIEKFRLSALIVINKWDIRGEKT 329

Query: 337 EEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            E                    IS+ TG  + +++++I +I     +++  S
Sbjct: 330 YEEAVDDIRDELKFLHYAPLITISAKTGMRVNKILDQITAIYERYKQRISTS 381



 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 10/123 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275
            N  K+ ILG  N GKSSLFN LA++  AI +D+ GTTRD+    + + G    ++ DT 
Sbjct: 4   HNLTKVAILGRPNVGKSSLFNRLARQRDAITSDVSGTTRDIKKRLVTISGNREFEVIDTG 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGT 327
           GI  + ++  K     +    + AD+I+ + +  +  +    +              +  
Sbjct: 64  GIDYSSELFSK-VADFSLKAADMADVIIYMVDGKTLPDEEDRELFYKLQALGKPLALVVN 122

Query: 328 KSD 330
           K D
Sbjct: 123 KID 125


>gi|294677824|ref|YP_003578439.1| GTP-binding protein EngA [Rhodobacter capsulatus SB 1003]
 gi|294476644|gb|ADE86032.1| GTP-binding protein EngA [Rhodobacter capsulatus SB 1003]
          Length = 499

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 18/173 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   D  L      + D+AG+  
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDLREGDARLGDLRFVVIDSAGLEL 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             DD ++    + T   VE AD+ L L +             +I   KN   I    K++
Sbjct: 63  AEDDSLQGRMRRLTERAVEEADVCLFLIDARVGVTPADEIFADILRKKNAHVILAANKAE 122

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +      +            S+  G+GL++L + ++ +      +    +P
Sbjct: 123 GNAGAAGALEAWSLGLGEPIALSAEHGQGLDDLYDILQPLADGFAARNVAQMP 175



 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 31/196 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N +  +D  +     G TRD +++     G  ++I DTAG+R+
Sbjct: 200 LQLAVIGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISVTKTFMGTPMRIWDTAGMRK 259

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF--------IFIGTK 328
                D +EK  +      V  A+++++L ++N   E+   +  DF        +    K
Sbjct: 260 KARVSDKLEKLSVADGLRAVRFAEVVVVLLDVNIPFEVQDLRIADFAETEGRAVVVAANK 319

Query: 329 SD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D                  L           +S+ TG+GL+ L N I        +++ 
Sbjct: 320 WDLEEEKTEKLKELRENFERLLPQLRGAPLVTVSAKTGKGLDRLHNAILKAYEVWNRRIS 379

Query: 371 FSIPSHKRHLYHLSQT 386
            +  ++   L  +++ 
Sbjct: 380 TAKLNN--WLGAMTEA 393


>gi|125972566|ref|YP_001036476.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405]
 gi|256005128|ref|ZP_05430097.1| small GTP-binding protein [Clostridium thermocellum DSM 2360]
 gi|281416754|ref|ZP_06247774.1| small GTP-binding protein [Clostridium thermocellum JW20]
 gi|125712791|gb|ABN51283.1| iron-only hydrogenase maturation protein HydF [Clostridium
           thermocellum ATCC 27405]
 gi|255990875|gb|EEU00988.1| small GTP-binding protein [Clostridium thermocellum DSM 2360]
 gi|281408156|gb|EFB38414.1| small GTP-binding protein [Clostridium thermocellum JW20]
 gi|316941196|gb|ADU75230.1| small GTP-binding protein [Clostridium thermocellum DSM 1313]
          Length = 400

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 12/156 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKSS+ NA+  +++AIV+D+ GTT D +   ++L     V I DT G
Sbjct: 10  NRLHIGFFGKRNAGKSSVVNAVTGQNLAIVSDVKGTTTDPVYKAMELLPLGPVVIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
           I +   + E   +KR+   +   D+ +L+ +    K        E+   K+I ++ +  K
Sbjct: 70  IDDEGTLGEMR-VKRSRQVLNKTDIAVLVIDATCGKSEDDEKLIELFEKKDIKYVVVYNK 128

Query: 329 SDL--YSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           +DL  +     + +  +S+ TG  + +L  KI S+ 
Sbjct: 129 ADLEGHEETVGDNEIYVSAKTGYNINKLKEKIASLA 164


>gi|325261977|ref|ZP_08128715.1| GTP-binding protein Era [Clostridium sp. D5]
 gi|324033431|gb|EGB94708.1| GTP-binding protein Era [Clostridium sp. D5]
          Length = 299

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 22/216 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  E   +   D
Sbjct: 3   ENYKSGF-VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVD 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFI 325
           T GI +  + + +  +      +   D++L L E    I + ++    +        I +
Sbjct: 62  TPGIHKAKNKLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEQHIIEQLGRVKTPVILV 121

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K+D             Y + YD      +S+  G+  +EL+  I   L    +     
Sbjct: 122 INKTDMVKKEEVLTFIDAYQKAYDFAAIVPVSARNGDNTDELVKVIMQYLPCGPQFYDED 181

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
             + +     +++ +R   +  L ++      +A +
Sbjct: 182 TITDQPERQIVAELIREKALHCLQDEIPHGIAVAID 217


>gi|295689707|ref|YP_003593400.1| ribosome-associated GTPase EngA [Caulobacter segnis ATCC 21756]
 gi|295431610|gb|ADG10782.1| ribosome-associated GTPase EngA [Caulobacter segnis ATCC 21756]
          Length = 588

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 18/170 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+LFN LA K +AIV D PG TRD    D  L    +++ DTAG  +
Sbjct: 3   LKLAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYADGRLGDLDLQLIDTAGFED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             D+ +E     +T L +E ADL L + +              +   +    I    K++
Sbjct: 63  VADESLEARMRAQTELAIEEADLSLFIYDAREGVTPLDEVFATLLRRRGKPVIIAANKAE 122

Query: 331 LYS---------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +                  IS   GEG+ EL   + + +  +      
Sbjct: 123 GKAGQSGIGEAYKLGLGEPIPISGEHGEGMAELYAAMLAAVPEEMYSGDD 172



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 12/169 (7%)

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           L   E   +     + +      +   +   +  G   E      ++ I+G  NAGKS+L
Sbjct: 136 LGLGEPIPISGEHGEGMAELYAAMLAAVPEEMYSGD-DEDEDKPIRLAIVGRPNAGKSTL 194

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRT 292
            N L  +   +     G TRD +++D       V++ DTAG+R+   +    EK   + T
Sbjct: 195 INRLIGEQRLLTGPEAGITRDSISVDWVWGDKKVRLVDTAGLRKKAKVQEKLEKLSTQDT 254

Query: 293 FLEVENADLILLLKEINSKKEISFPKNIDFI--------FIGTKSDLYS 333
              +  A++++L+ +     EI   +  D          F+  K DL  
Sbjct: 255 IRAITFAEVVVLVMDATHPFEIQDLQIADLTEREGRALVFVLAKWDLIE 303


>gi|296140071|ref|YP_003647314.1| ribosome-associated GTPase EngA [Tsukamurella paurometabola DSM
           20162]
 gi|296028205|gb|ADG78975.1| ribosome-associated GTPase EngA [Tsukamurella paurometabola DSM
           20162]
          Length = 482

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 101/269 (37%), Gaps = 30/269 (11%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++ T+      +      +     +  D+     +     L   E   +     +   + 
Sbjct: 140 ATSTDEAVARVLRRSKTPVILAANKVDDQRVESEAAALWSLGLGEPYTISAAHGRGTGDL 199

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +  +   +     +G  G   R   ++ ++G  N GKSSL N L  ++ ++V ++ GTT 
Sbjct: 200 LDVILEKLPETPREGTGGFGPR---RVALVGKPNVGKSSLLNKLTGENRSVVDNVAGTTV 256

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKEINSK- 311
           D +   ++L G   K  DTAG+R+  +     E     RT   +E A++ ++L + +   
Sbjct: 257 DPVDSLVELGGKTWKFIDTAGLRKKVNQASGHEFYASLRTKGAIEAAEVAIVLIDASQPI 316

Query: 312 -------KEISFPKNIDFIFIGTKSDLYST-----YTEEYD-----------HLISSFTG 348
                    +        +    K DL          +E D             IS+ TG
Sbjct: 317 TEQDLRVLSMVVESGRALVIAYNKWDLVDEDRRYQLEKEIDRELVQLPWAQRVNISAQTG 376

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHK 377
             L++L+  I + L +  K++P    ++ 
Sbjct: 377 RALQKLVPAIDTALESWDKRIPTGRLNNW 405



 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 21/178 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V DIPG TRD ++ + D  G    + DT G     
Sbjct: 50  VAIVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRISYEADWAGRRFLVQDTGGWEPDA 109

Query: 282 DIVEKEGIKRTFLEV-------------------ENADLILLLKEINSKKEISFPKNIDF 322
             +++    +  + +                   + A +  +L+   +   ++  K  D 
Sbjct: 110 KGMQQSVAAQAEVAMRTADAVVVVVDATVGATSTDEA-VARVLRRSKTPVILAANKVDDQ 168

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 + L+S    E  + IS+  G G  +L++ I   L    ++        +  L
Sbjct: 169 RVESEAAALWSLGLGE-PYTISAAHGRGTGDLLDVILEKLPETPREGTGGFGPRRVAL 225


>gi|317453529|emb|CBL87874.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGRPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I  +L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVLN 167


>gi|163942056|ref|YP_001646940.1| GTP-binding protein Era [Bacillus weihenstephanensis KBAB4]
 gi|163864253|gb|ABY45312.1| GTP-binding protein Era [Bacillus weihenstephanensis KBAB4]
          Length = 301

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 24/196 (12%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   D
Sbjct: 3   RKGYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVVFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISFPK----NIDFIFI 325
           T GI +    +    +K     ++  D++L +          +E    K          +
Sbjct: 63  TPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNATEGYGRGEEFIIEKLQETKQPVFLV 122

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L   Y + Y+      IS+  G  +E LI  IK  L    +  P +
Sbjct: 123 INKIDQLHPEQLLELIDQYRKLYEFAEIVPISALDGNNVEALIGAIKKYLPEGPQYYPDN 182

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +S+ +R
Sbjct: 183 QVTDHPERFIISELIR 198


>gi|320353093|ref|YP_004194432.1| GTP-binding protein Era [Desulfobulbus propionicus DSM 2032]
 gi|320121595|gb|ADW17141.1| GTP-binding protein Era [Desulfobulbus propionicus DSM 2032]
          Length = 299

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 80/197 (40%), Gaps = 26/197 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G    I+G  NAGKS+L N L  + +AIVT  P TTR+ +   +    Y + + DT G
Sbjct: 7   RSGV-AAIIGPPNAGKSTLLNHLLGQKIAIVTPKPQTTRNRIMGIVTGTSYQMILLDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN------------IDFIF 324
           +    + + ++ ++     +  AD+IL L +     E    +                + 
Sbjct: 66  LHAAREEMNRQMVRVALESLAEADVILFLVDGADWAEKKREQRAEEFQGYLEKMTCPVVL 125

Query: 325 IGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              K DL  +             Y       IS+  G G++ L +++ + L    +  P 
Sbjct: 126 ALNKVDLLPSAQLLPVMDWYRRLYPFAAMVPISALRGTGIDTLTDELVARLPVGPQYYPE 185

Query: 372 SIPSHKRHLYHLSQTVR 388
            IP+     +  ++ +R
Sbjct: 186 DIPTDASERFIAAEIIR 202


>gi|301632619|ref|XP_002945379.1| PREDICTED: hypothetical protein LOC100487340 [Xenopus (Silurana)
           tropicalis]
          Length = 937

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ + G  N GKS+L N    ++  +  D+PGTTRD +++  + +G   ++ DTAG+R 
Sbjct: 189 VKLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFERQGQKFELIDTAGLRR 248

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTK 328
              +    EK  + +T   +E+A+++LLL +      +    I+          +    K
Sbjct: 249 KGRVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVIAVNK 308

Query: 329 SDLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D    Y  +                  H IS+   +GL  L   I         K+P  
Sbjct: 309 WDAVDDYQRQMLGRSIEARLSFLKFANLHFISAQKRQGLGPLWTSIMQAHKAAGCKMPTP 368

Query: 373 IPSH 376
           I + 
Sbjct: 369 ILTR 372



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 18/167 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            G        I ++G  N GKS+LFN L +   AIV D  G TRD    +     +   +
Sbjct: 2   RGRAQGMKPVIALVGRPNVGKSTLFNRLTRSRDAIVADFAGLTRDRHYGNGRQGKHAYIV 61

Query: 272 SDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDF 322
            DT G   +    + +E  K+T   V  +D++L + +  +                    
Sbjct: 62  IDTGGFEPDASSGIFREMAKQTRQAVAESDVVLFVVDARAGVSAQDHGISNYLRRLGKPC 121

Query: 323 IFIGTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKS 360
           + +  K++   +  +  +            S+  G+G+  L+ +   
Sbjct: 122 LLVANKAEGMQSGAQLSEFYELGLGEVYPVSAAHGQGVRGLVERALE 168



 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 31/260 (11%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           E ++Q  L+        + L  +W                   + ++      E +    
Sbjct: 667 EGKLQVELARLQYLS--TRLVRRWSHLERQQGGVGMRGGPGETQIELDKRMIGEAIRRTR 724

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
              + +    S  +      + + I ++G++NAGKS+LFNAL K   A   D    T D 
Sbjct: 725 ERLHKVKRQRSTQRRQRERHDTFNISLVGYTNAGKSTLFNALVKA-RAYAADQLFATLDT 783

Query: 258 LTIDLDLE--GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KK 312
            T  L L+  G  V +SDT G          +  + T  E  +ADL+L + +  +    +
Sbjct: 784 TTRQLYLQDAGRSVSLSDTVGFIRDLPHGLVDAFQATLQEAVDADLLLHVVDAANPHFPE 843

Query: 313 EISFPK---------NIDFIFIGTKSDLYSTYTEEYDHLI--------------SSFTGE 349
           +I   +         +I  + +  K D  +                        S+ TGE
Sbjct: 844 QIQQVQTVLADIDAVDIPQLLVFNKLDALAPEQRSLQLQDSYEMDGRPVPRVFLSARTGE 903

Query: 350 GLEELINKIKSILSNKFKKL 369
           GL+ L  ++ + +     + 
Sbjct: 904 GLQALRQQLAATVIAGRGQG 923


>gi|92117234|ref|YP_576963.1| GTP-binding protein EngA [Nitrobacter hamburgensis X14]
 gi|122418012|sp|Q1QMP4|DER_NITHX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|91800128|gb|ABE62503.1| Small GTP-binding protein domain [Nitrobacter hamburgensis X14]
          Length = 460

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 29/190 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +   ++ I+G  NAGKS+L N L  ++  + +   GTTRD ++++L+ +G   +I DTAG
Sbjct: 186 QRPIRVAIVGRPNAGKSTLINYLLGEERLLTSPEAGTTRDSISVELNWQGRDFRIFDTAG 245

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--------FI 325
           +R    I    EK  +  T      A++++L+ +  ++ E    +  D I          
Sbjct: 246 LRRRSRIEEKLEKLSVADTLRAARFAEVVVLMMDAQNRFEEQDLRIADLIEREGRALVIA 305

Query: 326 GTKSD-------LYSTYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFK 367
             K D       L +    + DH            +S   GEG++ L+  I+   +   +
Sbjct: 306 VNKWDLMGRQSSLIAALRTDADHLLPQVKGMPIVAVSGLMGEGVDRLMTAIQDAYAIWNR 365

Query: 368 KLPFSIPSHK 377
           ++P +  +  
Sbjct: 366 RVPTAALNRW 375



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 18/163 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I I+G  N GKS+LFN L  + +A+V D PG TRD       L      + DTAG+ E
Sbjct: 3   FTIAIIGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRREGQARLGDLDFTVIDTAGLDE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                      ++T   +  AD ++ + +  +          + +   N   + +  KS+
Sbjct: 63  GPRGSLTARMQEQTETAIAAADALMFVFDARAGLTPTDRSFADFARRANKPVVLVANKSE 122

Query: 331 --------LYS-TYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                   L S          +S+  GEG+ +L + ++ ++  
Sbjct: 123 GRHGEAGALESYALGLGDPVGVSAEHGEGMSDLYDALRGVMPE 165


>gi|150390776|ref|YP_001320825.1| GTP-binding protein Era [Alkaliphilus metalliredigens QYMF]
 gi|189037249|sp|A6TSJ8|ERA_ALKMQ RecName: Full=GTPase Era
 gi|149950638|gb|ABR49166.1| GTP-binding protein Era [Alkaliphilus metalliredigens QYMF]
          Length = 295

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 24/195 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+L N +  + +AI++D P TTR+ +      E + +   DT 
Sbjct: 3   YKSGF-VTIIGRPNVGKSTLMNQIIGEKIAIMSDKPQTTRNKIQSVYSQEDFQIVFLDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIG 326
           GI +    + +  +K     ++  D++L L +   K         +++   K      I 
Sbjct: 62  GIHKPKHKLGEYMVKVARDTLKEVDVVLFLVDEGQKIGPGDRFIMEQLKDIK-TPMFLII 120

Query: 327 TKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D                T   +    IS+  G  ++ LI +I S L    +  P  +
Sbjct: 121 NKIDKMNQEILNEVCGLFEETGLFQRIIPISALEGANIDTLIKQIVSFLPEGPQYFPSDM 180

Query: 374 PSHKRHLYHLSQTVR 388
            + +     +++ VR
Sbjct: 181 ITDQPERLLVAEIVR 195


>gi|122702649|emb|CAL88514.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVLN 167


>gi|254779193|ref|YP_003057298.1| GTP-binding protein EngA [Helicobacter pylori B38]
 gi|254001104|emb|CAX29059.1| Putative GTP-binding protein, EngA family [Helicobacter pylori B38]
          Length = 461

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 108/252 (42%), Gaps = 47/252 (18%)

Query: 149 GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHIS 208
             +  +S+L    +D L ++   IE DLD    E ++N +S+E   +   ++        
Sbjct: 151 SHNRGISALIDAILDTL-NLNQIIEQDLDADILESLENNASEEETKEEEIIQ-------- 201

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
                        + I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    
Sbjct: 202 -------------VGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQK 248

Query: 269 VKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID 321
           +   DTAGIR    I  +EK  ++RT   +E + + LL+ ++++      ++IS   +  
Sbjct: 249 ICFVDTAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKH 308

Query: 322 ---FIFIGTKSDLYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILS 363
               I I  K D+     EE                    S      ++E+ +KI  +  
Sbjct: 309 SLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYE 368

Query: 364 NKFKKLPFSIPS 375
              K++P S+ +
Sbjct: 369 CFSKRIPTSLLN 380



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 129

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 130 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILDTLN 168


>gi|113955090|ref|YP_729987.1| GTP-binding protein Era [Synechococcus sp. CC9311]
 gi|113882441|gb|ABI47399.1| GTP-binding protein Era [Synechococcus sp. CC9311]
          Length = 317

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 24/223 (10%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
                +  R+G+ + ++G  N GKS+L N L    +AI + +  TTR+ L   L  +   
Sbjct: 10  TSDKSKEFRSGF-VALIGRPNVGKSTLVNQLIGDKIAITSPVAQTTRNRLRAILTTDEAQ 68

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNI 320
           + + DT GI +   ++ +  ++     +   D +LLL E             ++   +++
Sbjct: 69  LILVDTPGIHKPHHLLGERLVRTARSAIGEVDQVLLLLEGCEAPGRGDAFIVQLLRQQSL 128

Query: 321 DFIFIGTKSDLYS---------------TYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
               +  K DL                 + T+   H  S+ +G+G  EL+  I S++   
Sbjct: 129 PVQVLLNKWDLVPLEQKDAADAAYRELLSETDWPVHRCSALSGDGCPELVKAISSLMPEG 188

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            +  P  + S +     + + +R   + +  E+      ++ +
Sbjct: 189 PQLYPSDMVSDQPERLLMGELIREQVLLNTREEVPHSVAVSID 231


>gi|332185040|ref|ZP_08386789.1| ribosome-associated GTPase EngA [Sphingomonas sp. S17]
 gi|332014764|gb|EGI56820.1| ribosome-associated GTPase EngA [Sphingomonas sp. S17]
          Length = 456

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G   ++ DTAG  + D
Sbjct: 7   VAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDAHLLGLDFRVIDTAGYEDED 66

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD-- 330
            D +     ++T   V  AD+ L L +  +      +EI+      +   +    K++  
Sbjct: 67  PDTLPGRMRRQTEAAVGEADVALFLVDARAGIMPLDEEIARWLRSSDTPIVLAANKAEGR 126

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKI 358
                +       +     +S+  GEG+ +L   +
Sbjct: 127 AAEQGILEALALGFGDPVQLSAEHGEGVGDLFEAL 161



 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 34/192 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-----YLVKISDT 274
            K+ I+G  NAGKS+L N    +D  I     G TRD + ID +          V++ DT
Sbjct: 184 LKLAIVGRPNAGKSTLINRFLGQDRLITGPEAGITRDSIAIDWEWRDRDGEVRQVRLIDT 243

Query: 275 AGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEIS-----FPKNIDFI 323
           AG+R+     D +EK  +      V+ A++++LL +       +++        +    +
Sbjct: 244 AGMRKKAKVQDKLEKLSVADALRAVDFAEVVVLLLDATLGLESQDLRIADRVLEEGRALL 303

Query: 324 FIGTKSDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNK 365
               K D+    +  ++                    +S+ TG+GL+ LI       +  
Sbjct: 304 IALNKWDVAENPSSLFNGVKKALEDGLSQVKGVPLLAVSAATGKGLDTLIEAAFETRAAW 363

Query: 366 FKKLPFSIPSHK 377
            K++P    +  
Sbjct: 364 SKRVPTGELNRW 375


>gi|254294311|ref|YP_003060334.1| GTP-binding protein EngA [Hirschia baltica ATCC 49814]
 gi|254042842|gb|ACT59637.1| small GTP-binding protein [Hirschia baltica ATCC 49814]
          Length = 483

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 18/163 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+LFN L  K +A+V D PG TRD       L    + + DTAG  +
Sbjct: 3   LKVAIVGRPNVGKSTLFNRLVGKKIALVDDQPGVTRDRKEARGRLGDLELDLIDTAGFDD 62

Query: 280 TDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            +D   E    ++T + +  AD+ L + +             ++    +   I +  K +
Sbjct: 63  VNDASLEARMRRQTEMAIAEADVSLYVIDARVGVTPIDRVFSKLLRQADKPTILVANKCE 122

Query: 331 -------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSN 364
                  L   ++  ++  +  S+  GEG+ +L   +      
Sbjct: 123 GRQGDVGLTEAFSLGFNEPVALSAEHGEGMSDLYQALLEAAPE 165



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 20/196 (10%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212
            LS+ +G+ +  L         +L   E E  +  +  +   +               ++
Sbjct: 143 ALSAEHGEGMSDLYQALLEAAPELTSPEAEQEEERAWDDDFVEFDP---------EAEEI 193

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
                   K  ++G  NAGKS+L N+L + D  +     G TRD +T+  + EG  +++ 
Sbjct: 194 EAPPERPMKFTVVGRPNAGKSTLLNSLLQSDRLLTGPEAGITRDSVTVAWEYEGREMRLV 253

Query: 273 DTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNID 321
           DTAG+R+   +    EK     T   ++ AD++ ++ +     E        +   +   
Sbjct: 254 DTAGLRKKAKVQERLEKMSTGETIHSIKYADVVAIVMDSRDAFEKQDLQIADLVLREGRG 313

Query: 322 FIFIGTKSDLYSTYTE 337
            +F+ TK DL     E
Sbjct: 314 VVFVCTKWDLVENGGE 329


>gi|182418397|ref|ZP_02949691.1| GTP-binding protein Era [Clostridium butyricum 5521]
 gi|237666582|ref|ZP_04526567.1| GTP-binding protein Era [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377779|gb|EDT75323.1| GTP-binding protein Era [Clostridium butyricum 5521]
 gi|237657781|gb|EEP55336.1| GTP-binding protein Era [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 296

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 93/214 (43%), Gaps = 25/214 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + I+G  N GKS+L N +  + ++IV++ P TTR+ +   L  + + +   DT G
Sbjct: 3   KSGF-VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGDDFQMVFVDTPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK----EINSKKEISFP----KNIDFIFIGTK 328
           I +    + +  +       ++ DL+L L     EI             K     F+  K
Sbjct: 62  IHKPKHKLGEFMVNSAKESTKDVDLVLFLTNPCEEIGKGDRFILETLKGKKCPVFFVLNK 121

Query: 329 SD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D             +++E++      IS+  G+ ++ L++ +K  +    K  P  + +
Sbjct: 122 VDENTQDRVAKTLEMFSKEFEFAEIVPISAIKGKNVDALLDLMKKSMPEGPKYYPDDMIT 181

Query: 376 HKRHLYHLSQTVRYLEMASLNE---KDCGLDIIA 406
             +  + +S+ VR   + +L +       +DI+ 
Sbjct: 182 DVQEKFVISEIVREKALRTLRDEVPHGIAVDILQ 215


>gi|122700681|emb|CAL87929.1| GTPase [Helicobacter pylori]
 gi|122700687|emb|CAL87932.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|15618753|ref|NP_225039.1| GTP-binding protein EngA [Chlamydophila pneumoniae CWL029]
 gi|15836377|ref|NP_300901.1| GTP-binding protein EngA [Chlamydophila pneumoniae J138]
 gi|16752195|ref|NP_445562.1| GTP-binding protein EngA [Chlamydophila pneumoniae AR39]
 gi|33242204|ref|NP_877145.1| GTP-binding protein EngA [Chlamydophila pneumoniae TW-183]
 gi|8134434|sp|Q9Z762|DER_CHLPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|4377159|gb|AAD18982.1| GTPase/GTP-binding protein [Chlamydophila pneumoniae CWL029]
 gi|7189939|gb|AAF38801.1| GTP-binding protein [Chlamydophila pneumoniae AR39]
 gi|8979218|dbj|BAA99052.1| GTPase/GTP-binding protein [Chlamydophila pneumoniae J138]
 gi|33236715|gb|AAP98802.1| GTPase/GTP-binding protein [Chlamydophila pneumoniae TW-183]
          Length = 487

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 27/183 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI ++G  N GKSS+ N L  ++  I+ + PGTTRD + I    +       DTAG+R+
Sbjct: 225 LKIALIGRPNVGKSSIINGLLNEERCIIDNTPGTTRDNIDILYSHKDRQYLFIDTAGLRK 284

Query: 280 ---TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
                + +E     RT   +  AD+ LL+ +   K          +   +    I +  K
Sbjct: 285 MKSVKNSIEWISSSRTEKAISRADICLLVIDATQKLSSYEKRILSLISKRKKPHIILINK 344

Query: 329 SDLYSTYTEEYDH----------------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            DL      E+                   IS+ T   L+++ + I  +      K+P  
Sbjct: 345 WDLLEEVRMEHYCKDLRATDPYLGQAKMLCISATTKRNLKKIFSAIDELHHVVSNKVPTP 404

Query: 373 IPS 375
           I +
Sbjct: 405 IVN 407



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 18/189 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI ILG  N GKSSLFN L K+ +AIV    GTTRD L  +L   G   ++ DT G+  
Sbjct: 2   LKIAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGELHAFGVPAQVIDTGGVDH 61

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSD 330
            ++D  +K    +     + AD++LL+ +I            ++  P     I +  K+D
Sbjct: 62  NSEDYFQKHIYNQALTGAKEADVLLLVIDIRCGITEEDAHLAKLLLPLKKPLILVANKAD 121

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                 + ++          + S+   + ++ L+ +IK + +    +        +  + 
Sbjct: 122 SRQEELQIHETYKLGIRDIVVTSTAHDKHIDTLLQRIKLVANLPEPREEEEEGLEELSVD 181

Query: 382 HLSQTVRYL 390
              ++   L
Sbjct: 182 EHEESEAAL 190


>gi|256392245|ref|YP_003113809.1| small GTP-binding protein [Catenulispora acidiphila DSM 44928]
 gi|256358471|gb|ACU71968.1| small GTP-binding protein [Catenulispora acidiphila DSM 44928]
          Length = 493

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 101/262 (38%), Gaps = 28/262 (10%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           +T+      +      +     +  D+ T   +    +L   E   V     +   + + 
Sbjct: 149 DTDEAVVRVLRKAGKPVILAANKVDDQRTEANAAELWNLGLGEPFAVSALHGRGSGDLLD 208

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + + +   + + GE++    ++ ++G  N GKSSL N LA ++  +V    GTTRD 
Sbjct: 209 AVLDALPAT-PKVRFGELMGGPRRVALVGKPNVGKSSLLNKLAGEERVVVDATAGTTRDP 267

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINS---K 311
           +   +DL G   +  DTAGIR         +     RT   ++ A++ ++L + +    +
Sbjct: 268 VDELIDLGGKTWRFVDTAGIRRRVHQTYGADFYASLRTQGAIDKAEVAVVLVDASDSLTE 327

Query: 312 KEISF-----PKNIDFIFIGTKSDLYSTYTE----------------EYDHLISSFTGEG 350
           +++             +    K DL                           +++ TG  
Sbjct: 328 QDLRIITMVAEAGRALVIAYNKWDLMDEERRYYLEREIERDLVQVRWAPRVNLAALTGRH 387

Query: 351 LEELINKIKSILSNKFKKLPFS 372
           +++L+  ++  L+    ++P +
Sbjct: 388 VDKLVPALEQALAGWETRVPTA 409



 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 72/204 (35%), Gaps = 18/204 (8%)

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
             D  + +  +   D       + +   +   GE +R    + ++G  N GKS+L N + 
Sbjct: 17  PTDASDVAYFDEDFDYEAYAEGLDAEDWERGEGEGVRLPV-LAVVGRPNVGKSTLVNRIL 75

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            +  A+V D+PG TRD ++ D    G    + DT G     + + K    +    +  AD
Sbjct: 76  GRREAVVQDVPGVTRDRVSYDAHWNGRRFSLVDTGGWERDVEGMAKAVAFQAEAAIHAAD 135

Query: 301 LILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--------- 343
            ++ + +          +   +        I    K D   T     +            
Sbjct: 136 AVMFVVDATVGITDTDEAVVRVLRKAGKPVILAANKVDDQRTEANAAELWNLGLGEPFAV 195

Query: 344 SSFTGEGLEELINKIKSILSNKFK 367
           S+  G G  +L++ +   L    K
Sbjct: 196 SALHGRGSGDLLDAVLDALPATPK 219


>gi|163736771|ref|ZP_02144190.1| Small GTP-binding protein domain [Phaeobacter gallaeciensis BS107]
 gi|161390641|gb|EDQ14991.1| Small GTP-binding protein domain [Phaeobacter gallaeciensis BS107]
          Length = 508

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 18/157 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ +
Sbjct: 25  FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVVDTAGLED 84

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ +E    + T   V+ AD+ L + +             EI   K+   I    K++
Sbjct: 85  ATDNSLEGRMRRLTERAVDMADVCLFMIDARVGVTPIDQMFAEILRKKSAHVILAANKAE 144

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKI 358
             +      D            S   GEGL +L +++
Sbjct: 145 GNAADAGVLDAWGLGLGEPIRLSGEHGEGLNDLYSQL 181



 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 78/187 (41%), Gaps = 29/187 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D +   ++I DTAG+R+
Sbjct: 223 LQVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQIDWQDVPMRIFDTAGMRK 282

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      V+ A+++++L +     E        ++  +    +    K
Sbjct: 283 KAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVVVAVNK 342

Query: 329 SDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D+     E+                      +S+ TG+GL+ L   I        +++P
Sbjct: 343 WDIEDEKQEKLRNLKEAFDRLLPQLRGAPLITVSAKTGKGLDRLHAAIMRAYDVWNRRVP 402

Query: 371 FSIPSHK 377
            +  +  
Sbjct: 403 TAALNRW 409


>gi|67923219|ref|ZP_00516706.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Crocosphaera watsonii WH 8501]
 gi|67854950|gb|EAM50222.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Crocosphaera watsonii WH 8501]
          Length = 314

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 24/210 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+L N L  + +AI + +  TTR+ L   L  E   +   D
Sbjct: 18  EGFKSGF-VGIIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLRGILTTEKAQIIFVD 76

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFI 325
           T GI +    + K  +K     +   D+ILL+ + ++K        I   K  N   I  
Sbjct: 77  TPGIHKPHHSLGKIIVKNAKTAINAVDIILLVVDSSTKSGGGDRYIIDLLKTVNQPIILG 136

Query: 326 GTKSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPF 371
             KSD      +E D                 S+ TG+GLE L N +   L       P 
Sbjct: 137 LNKSDQQPENYQEIDESYASLIQDYNWPILKFSALTGDGLENLQNSLIEQLDFGPYYYPP 196

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            + + +   + + + +R  ++  +  ++  
Sbjct: 197 DLITDQPERFIMGELIRE-QILQMTRQEIP 225


>gi|269302630|gb|ACZ32730.1| putative GTP-binding protein Era [Chlamydophila pneumoniae LPCoLN]
          Length = 485

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 27/183 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI ++G  N GKSS+ N L  ++  I+ + PGTTRD + I    +       DTAG+R+
Sbjct: 223 LKIALIGRPNVGKSSIINGLLNEERCIIDNTPGTTRDNIDILYSHKDRQYLFIDTAGLRK 282

Query: 280 ---TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
                + +E     RT   +  AD+ LL+ +   K          +   +    I +  K
Sbjct: 283 MKSVKNSIEWISSSRTEKAISRADICLLVIDATQKLSSYEKRILSLISKRKKPHIILINK 342

Query: 329 SDLYSTYTEEYDH----------------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            DL      E+                   IS+ T   L+++ + I  +      K+P  
Sbjct: 343 WDLLEEVRMEHYCKDLRATDPYLGQAKMLCISATTKRNLKKIFSAIDELHHVVSNKVPTP 402

Query: 373 IPS 375
           I +
Sbjct: 403 IVN 405



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 18/158 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI ILG  N GKSSLFN L K+ +AIV    GTTRD L  +L   G   ++ DT G+  
Sbjct: 2   LKIAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGELHAFGVPAQVIDTGGVDH 61

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSD 330
            ++D  +K    +     + AD++LL+ +I            ++  P     I +  K+D
Sbjct: 62  NSEDYFQKHIYNQALTGAKEADVLLLVIDIRCGITEEDAHLAKLLLPLKKPLILVANKAD 121

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIK 359
                 + ++          + S+   + ++ L+ +IK
Sbjct: 122 SRQEELQIHETYKLGIRDIVVTSTAHDKHIDTLLQRIK 159


>gi|242255858|gb|ACS88913.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISTLIDAILSALN 167


>gi|270297048|ref|ZP_06203247.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273035|gb|EFA18898.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 402

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 16/171 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V+  PGTT D +T  ++          DT G
Sbjct: 8   NRLHIAVFGRRNSGKSSLVNALTGQDTALVSATPGTTTDPVTKAMEVYPLGPCLFIDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----NIDFIFIGTKSD- 330
             + +  +    ++RT   VE AD+ LLL E +   E  + K      I  I I  K+D 
Sbjct: 68  FDDDEGELGGMRVERTLKTVEKADIALLLYEADGTLEQQWIKLLAAREIPVILILNKADS 127

Query: 331 ---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                           +   ++S+  G G++ + + I   L   F +   +
Sbjct: 128 RQDTASVVLRIEKECGQVPVVVSAKEGTGIQGIFDAILEKLPENFGEQTIT 178


>gi|242255856|gb|ACS88912.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166


>gi|122700647|emb|CAL87912.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I ++L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNVLN 167


>gi|46191228|ref|ZP_00206719.1| COG1160: Predicted GTPases [Bifidobacterium longum DJO10A]
          Length = 597

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 30/243 (12%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
             +  D+ +   +     L   E   +     + V + +    + +         G +  
Sbjct: 275 VNKIDDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTS--GYLTP 332

Query: 218 NGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +G + + ++G  N GKSSL N LA+++ A+V D+ GTTRD +   ++++G      DTAG
Sbjct: 333 SGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAG 392

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFI 325
           I+         E     RT   +E  +L L+L + +        K            + +
Sbjct: 393 IKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLV 452

Query: 326 GTKSD---------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKL 369
             K D         L   +  E+D ++       S+ TG     L   +   L +  +++
Sbjct: 453 FNKWDAMDEFDKQRLERLWNTEFDRVMWAERVNLSAKTGWHTNRLTRAMDKALESWDQRI 512

Query: 370 PFS 372
           P  
Sbjct: 513 PTG 515



 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 17/181 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 163 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 222

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYS 333
           + +E     +  + V  AD ++ + +       + + I           +    K D  +
Sbjct: 223 EGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDDQA 282

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           +     +           IS+  G G+ +L++     L    K   +  PS  R +  + 
Sbjct: 283 SEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQAEKTSGYLTPSGLRRVALVG 342

Query: 385 Q 385
           +
Sbjct: 343 R 343


>gi|163743210|ref|ZP_02150592.1| GTP-binding protein EngA [Phaeobacter gallaeciensis 2.10]
 gi|161383627|gb|EDQ08014.1| GTP-binding protein EngA [Phaeobacter gallaeciensis 2.10]
          Length = 508

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 18/157 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ +
Sbjct: 25  FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVVDTAGLED 84

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ +E    + T   V+ AD+ L + +             EI   K+   I    K++
Sbjct: 85  ATDNSLEGRMRRLTERAVDMADVCLFMIDARVGVTPIDQMFAEILRKKSAHVILAANKAE 144

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKI 358
             +      D            S   GEGL +L +++
Sbjct: 145 GNAADAGVLDAWGLGLGEPIRLSGEHGEGLNDLYSQL 181



 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 78/187 (41%), Gaps = 29/187 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D +   ++I DTAG+R+
Sbjct: 223 LQVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQIDWQDVPMRIFDTAGMRK 282

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      V+ A+++++L +     E        ++  +    +    K
Sbjct: 283 KAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVVVAVNK 342

Query: 329 SDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D+     E+                      +S+ TG+GL+ L   I        +++P
Sbjct: 343 WDIEDEKQEKLRNLKEAFDRLLPQLRGAPLITVSAKTGKGLDRLHAAIMRAYDVWNRRIP 402

Query: 371 FSIPSHK 377
            +  +  
Sbjct: 403 TAALNRW 409


>gi|323356705|ref|YP_004223101.1| GTPase [Microbacterium testaceum StLB037]
 gi|323273076|dbj|BAJ73221.1| predicted GTPase [Microbacterium testaceum StLB037]
          Length = 507

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD +T   +       + DT G     
Sbjct: 69  VAIVGRPNVGKSALVNRILGRREAVVEDTPGVTRDRVTYKAEWLDRRFSLVDTGGWEPDA 128

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
             +++    +  + ++ AD++L + +      S  E    +          I  K D   
Sbjct: 129 KGIDRSVAAQAEVAIDLADVVLFVVDATVGATSTDEHVVKLLRKSKKPVFLIANKVDDAR 188

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSN 364
              E            H +S+  G G+ +L++++  +L  
Sbjct: 189 QEPEATALWNLGLGEPHPVSAIHGRGVADLLDELMKVLPE 228



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 97/247 (39%), Gaps = 35/247 (14%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG- 219
             +K+   R   EA   ++      +  S      +  L +++   + +         G 
Sbjct: 180 IANKVDDARQEPEATALWNLGLGEPHPVSAIHGRGVADLLDELMKVLPEVSAVAKYEIGG 239

Query: 220 -YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             ++ ILG  N GKSSL N  A ++  +V ++ GTTRD +   ++L G L  + DTAGIR
Sbjct: 240 PRRVAILGRPNVGKSSLLNKAAGEERVVVNELAGTTRDPVDEVVELGGKLWTLVDTAGIR 299

Query: 279 ETDDIVE---KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
               + +        RT   +E +++ +++ +++           ++        +    
Sbjct: 300 RRVHLSQGADFYASLRTSTALEKSEVAVVVLDVSQPISVQDLNIIDLVLESGRALVLAFN 359

Query: 328 KSD---------------LYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNK 365
           K D               L     ++  H        IS+ TG  L++L+  +++ L + 
Sbjct: 360 KWDRLNDDDMENQDRRRYLEREIEQDLAHVAWAPRVNISARTGRHLDKLVPALETALESW 419

Query: 366 FKKLPFS 372
             ++P  
Sbjct: 420 DTRIPTG 426


>gi|122701579|emb|CAL88179.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I  +L+
Sbjct: 129 EKERTYAFSSFGMPKSFNISVSHNRGISALIDAILRVLN 167


>gi|317177334|dbj|BAJ55123.1| GTP-binding protein EngA [Helicobacter pylori F16]
          Length = 461

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 25/180 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKSD 330
             I  +EK  ++RT   +E + + LL+ ++++      ++IS   +      I I  K D
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +     EE                    S      ++E+ +KI  +     K++P S+ +
Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSLLN 380



 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I + +++   +     N +   +  K D   
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDLKLFREVFKTNPNCFLVINKIDNDK 129

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 130 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLN 168


>gi|289641297|ref|ZP_06473463.1| small GTP-binding protein [Frankia symbiont of Datisca glomerata]
 gi|289508895|gb|EFD29828.1| small GTP-binding protein [Frankia symbiont of Datisca glomerata]
          Length = 457

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 20/189 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           + G+ G   R    + ++G  N GKS+L N +  +  A+V D+PG TRD +  D    G 
Sbjct: 10  AAGRSGIDDRQPV-LAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDATWNGR 68

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKN 319
              + DT G       +     ++    ++ AD +L + +          +   +     
Sbjct: 69  RFVVVDTGGWEPDARGLAARVAEQARAALDTADAVLFVVDTTVGATDADEAVARVLHRSG 128

Query: 320 IDFIFIGTKSD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           +  +    K D          L+S    E  H +SS  G G  +L++ I   L    ++ 
Sbjct: 129 LPVVLAANKVDDSRGEADATALWSLGLGE-PHPVSSLHGRGSGDLLDAILEALPPAPRER 187

Query: 370 PFSIPSHKR 378
              I   +R
Sbjct: 188 FEEIDGPRR 196



 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 85/240 (35%), Gaps = 14/240 (5%)

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTH 167
           +    + R  E  +  L  A+++  ++ +         ++  +            +K+  
Sbjct: 81  DARGLAARVAEQARAALDTADAVLFVVDTTVGATDADEAVARVLHRSGLPVVLAANKVDD 140

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG--EIIRNGYKIVIL 225
            R   +A   +S      +  S         L + I   +        E I    ++ +L
Sbjct: 141 SRGEADATALWSLGLGEPHPVSSLHGRGSGDLLDAILEALPPAPRERFEEIDGPRRVALL 200

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI-- 283
           G  N GKSSL N LA    ++V D+ GTTRD +   + + G   K  DTAG+R       
Sbjct: 201 GKPNVGKSSLLNRLAGTQRSLVHDVAGTTRDPVDELVTVGGETWKFVDTAGLRRRVREAS 260

Query: 284 -VEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYST 334
             E     RT   +E A++ ++L + +            +        +    K DL   
Sbjct: 261 GAEYYSSLRTAAALEAAEVAIVLLDASESLTEQDQRVITMVVEAGRALVLAFNKWDLLDE 320


>gi|317506861|ref|ZP_07964633.1| ribosome-associated GTPase EngA [Segniliparus rugosus ATCC BAA-974]
 gi|316254789|gb|EFV14087.1| ribosome-associated GTPase EngA [Segniliparus rugosus ATCC BAA-974]
          Length = 449

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N    +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 13  VAVVGRPNVGKSTLVNRFVGRRAAVVEDVPGVTRDRVSYDAEWGGRSFLVQDTGGWEPDA 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPK-----NIDFIFIGTKSDLYS 333
             +     ++  L +  AD+ILL+ +  +     + +  K           +  KSD   
Sbjct: 73  TGIGLSIAQQAELAMATADVILLVVDAQAGPTGVDEALAKSLRRSKKPVFLVANKSDNPQ 132

Query: 334 TYTE---------EYDHLISSFTGEGLEELINKIKSILS 363
              E            + +S+  G+G  +L++     + 
Sbjct: 133 IEDESSGLWSLGLGRPYPVSALHGKGSGDLLDAALESVP 171



 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 30/202 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                + + +     G   R   ++ ++G  N GKSSL N LA +  ++V ++ GTT D 
Sbjct: 165 AALESVPAVLVAEHEGPRPR---RVALVGRPNVGKSSLINKLAGETRSVVNEMAGTTVDP 221

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SK 311
           +   + L+    +  DTAG+R         E     RT   +E A+++++L + +   ++
Sbjct: 222 VDSIITLDDEEWQFVDTAGLRRKVGHASGHEFYAAVRTKSAIEAAEVVIVLIDASVPLTE 281

Query: 312 KEISF-----PKNIDFIFIGTKSDLYS-----TYTEEYD-----------HLISSFTGEG 350
           ++              +    K DL          +E D             IS+ +G  
Sbjct: 282 QDQRIFGMVGEAGRAMVLACNKWDLVDEDRRHELEKELDRGLTRVTWAPRVNISALSGRA 341

Query: 351 LEELINKIKSILSNKFKKLPFS 372
           + +L   ++  LS+  +++P  
Sbjct: 342 VHKLAPALRVALSSWEERIPTG 363


>gi|303232256|ref|ZP_07318955.1| ribosome-associated GTPase EngA [Atopobium vaginae PB189-T1-4]
 gi|302481666|gb|EFL44727.1| ribosome-associated GTPase EngA [Atopobium vaginae PB189-T1-4]
          Length = 439

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 89/239 (37%), Gaps = 26/239 (10%)

Query: 132 ADLISSETEMQRRLSMEGMSGEL--SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
             L++ E        ++G  G L       + + +L          +D  E         
Sbjct: 77  QALLACEEADVIVQVVDGTIGVLEEDEEVARIVRRLHKPCFLAVNKIDNPETVIDDWMYL 136

Query: 190 KEVLNDILFLKN-------DISSHISQG------KLGEIIRNGYKIVILGHSNAGKSSLF 236
              L   + +         D+   I +       +      +   I ++G  N GKSSL 
Sbjct: 137 SLGLGSPIAISATHGTQTGDLLDLIVESFKCIVQEDSPYGDDMLSIAVIGRPNVGKSSLV 196

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTF 293
           N L+K + ++V +I GTTRD + I  +     +++ DTAG+R+   +    E   + R  
Sbjct: 197 NKLSKTNRSLVANIAGTTRDAIDICFEYHDTPIRLVDTAGMRKKSQVHEDVEYYSLVRGL 256

Query: 294 LEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
             ++ AD+ L++ +              ++  +    + +  K DL S+  ++     S
Sbjct: 257 QAMDKADVALMVIDAAEGMTEQDQKLMGMAIDRGCALVLVINKIDLLSSEEDKLKLKDS 315



 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 19/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279
           + I+G  N GKS+L N LA    AIV +  G TRD    D D  G    + DT GI  ++
Sbjct: 6   VAIVGRPNVGKSTLVNRLATTKTAIVHESRGVTRDRSYHDCDWRGVDFTLIDTGGIESQK 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDL 331
           + D+      ++  L  E AD+I+ + +              I    +        K D 
Sbjct: 66  STDVFALGIREQALLACEEADVIVQVVDGTIGVLEEDEEVARIVRRLHKPCFLAVNKIDN 125

Query: 332 YSTYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
             T  +++            IS+  G    +L++ I        ++  
Sbjct: 126 PETVIDDWMYLSLGLGSPIAISATHGTQTGDLLDLIVESFKCIVQEDS 173


>gi|295399214|ref|ZP_06809196.1| GTP-binding protein Era [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110184|ref|YP_003988500.1| GTP-binding protein Era [Geobacillus sp. Y4.1MC1]
 gi|294978680|gb|EFG54276.1| GTP-binding protein Era [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215285|gb|ADP73889.1| GTP-binding protein Era [Geobacillus sp. Y4.1MC1]
          Length = 302

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +      +   +   D
Sbjct: 4   EGYKSGF-VSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFI 325
           T G+ +    +    +K     ++  DLIL +              I   K  N     +
Sbjct: 63  TPGMHKPKHKLGDFMMKVALNALKEVDLILFMINAEEGFGRGDAYIIERLKEVNTPVFLV 122

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L   Y E Y       IS+  G  +E L+ +IK  L    +  P  
Sbjct: 123 INKIDLVHPNDLLPLIDRYKELYPFAEIIPISALQGNNIETLVEQIKKYLPEGPQYYPPD 182

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +++ +R
Sbjct: 183 QVTDHPERFIIAELIR 198


>gi|122700679|emb|CAL87928.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISTLIDAILNALN 167


>gi|302670578|ref|YP_003830538.1| GTP-binding protein Era [Butyrivibrio proteoclasticus B316]
 gi|302395051|gb|ADL33956.1| GTP-binding protein Era [Butyrivibrio proteoclasticus B316]
          Length = 364

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 80/198 (40%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N +  + +AI ++ P TTR+ +      +   +   DT GI ++ 
Sbjct: 10  ITLIGRPNVGKSTLMNHMIGQKIAITSNKPQTTRNKIMTVYTDDDCQMIFLDTPGIHDSK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNI--DFIFIGTKSDLYS 333
           + + +   K     +E  D++L L E         K  I   K      I +  K D  S
Sbjct: 70  NKLGEYMTKVAKSTLEEVDVVLWLVEPSTFIGAGEKSIIEELKKCRKPVILVINKIDTVS 129

Query: 334 T---------YTEEYDHLI----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     Y +E D       ++  G+ ++EL++ IK +L            + +   
Sbjct: 130 KDNLDKFENAYRQEMDFDRVVKVAALKGQNIDELMDAIKKLLPFGPPFYDEETLTDQPER 189

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++ +R   +  L ++
Sbjct: 190 QIAAEIIREKALRLLQDE 207


>gi|295695440|ref|YP_003588678.1| GTP-binding protein Era [Bacillus tusciae DSM 2912]
 gi|295411042|gb|ADG05534.1| GTP-binding protein Era [Bacillus tusciae DSM 2912]
          Length = 300

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 74/193 (38%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   ++G  N GKS+L N L    +AI++D P TTR+ +   L  E   V   DT G
Sbjct: 8   RSGF-AALVGRPNVGKSTLLNRLIGTKIAIMSDKPQTTRNRIRGVLTRENGQVIFLDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTK 328
           +      +     +     ++  DL+L + ++ SK        +   +        +  K
Sbjct: 67  VHRPKHRLGDYMNRLALATLQEVDLVLFVIDVTSKFGPGEQVILDHLQGVETPVFLVINK 126

Query: 329 SDLYS-------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL S              Y       +S+  G  L+ L  +I + L       P    +
Sbjct: 127 IDLVSPEELLPMIDEHRKRYPFREVVPVSAVKGTNLDRLEERIFATLPQGPAYYPADQVT 186

Query: 376 HKRHLYHLSQTVR 388
                + +++ VR
Sbjct: 187 DHPESFIVAELVR 199


>gi|122702597|emb|CAL88488.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILSVL 166


>gi|108799893|ref|YP_640090.1| GTP-binding protein EngA [Mycobacterium sp. MCS]
 gi|119869003|ref|YP_938955.1| GTP-binding protein EngA [Mycobacterium sp. KMS]
 gi|126435521|ref|YP_001071212.1| GTP-binding protein EngA [Mycobacterium sp. JLS]
 gi|108770312|gb|ABG09034.1| Small GTP-binding protein domain protein [Mycobacterium sp. MCS]
 gi|119695092|gb|ABL92165.1| small GTP-binding protein [Mycobacterium sp. KMS]
 gi|126235321|gb|ABN98721.1| small GTP-binding protein [Mycobacterium sp. JLS]
          Length = 471

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA  + ++V D+ GTT D +   ++L G   +  DTAG+R  
Sbjct: 209 RVALVGKPNVGKSSLLNRLAGDERSVVHDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRK 268

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
                  E     RT   ++ A+++L+L + +            +        +    K 
Sbjct: 269 VGQASGHEFYASVRTHGAIDAAEVVLVLIDASQPLTEQDQRVLSMVIEAGRALVLAFNKW 328

Query: 330 DLYST-----YTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL           E D             IS+ TG  +++L+  +++ L +   ++P  
Sbjct: 329 DLVDEDRRYLLDREIDRELAQVQWAPRVNISAMTGRAVQKLVPALETALQSWDARIPTG 387



 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 17/176 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD ++ D    G    + DT G     
Sbjct: 37  VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDATWSGRRFVVQDTGGWEPDA 96

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYS 333
             +++    +  + +  AD I+L+ +          +   +             K D   
Sbjct: 97  KGLQQLVADQATVAMRTADAIILVVDAVVGATAADEAAARMLRKSGKPVFLAANKVDTER 156

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              +            H +S+  G G+ +L++ +   L    +    S    +  L
Sbjct: 157 GEADAAALWSLGIGQPHSVSAIHGRGVADLLDHVLEKLPEVSEVGGGSGGPRRVAL 212


>gi|15834701|ref|NP_296460.1| GTP-binding protein EngA [Chlamydia muridarum Nigg]
 gi|270284867|ref|ZP_06194261.1| GTP-binding protein EngA [Chlamydia muridarum Nigg]
 gi|301336246|ref|ZP_07224448.1| GTP-binding protein EngA [Chlamydia muridarum MopnTet14]
 gi|14194736|sp|Q9PLM3|DER_CHLMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|7190111|gb|AAF38958.1| GTP-binding protein, Era/ThdF family [Chlamydia muridarum Nigg]
          Length = 490

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 15/158 (9%)

Query: 190 KEVLNDILFLKND----ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
            E L +   L  +    +   ++Q     I     K+ ++GH N GKSS+ NAL K++  
Sbjct: 193 DETLFENESLSQEEASFLEELVAQTTTPSISNRPLKVALIGHPNVGKSSIVNALLKEERC 252

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLI 302
           I  + PGTTRD + +            DTAG+R+   I    E     RT   +  AD+ 
Sbjct: 253 ITDNSPGTTRDNVDVSYTYNDKEYVFIDTAGLRKAKSIKNSVEWMSSSRTEKAISRADIC 312

Query: 303 LLLKEINSKKEISFPK--------NIDFIFIGTKSDLY 332
           LL+ +   +      +            + +  K DL 
Sbjct: 313 LLVIDATQQLSYQDKRILSLIARYKKPHVILVNKWDLM 350



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-R 278
            +I ILG  N GKSS+FN L K+ +AIV    GTTRD L  ++     +V + DT G+ +
Sbjct: 1   MRIAILGRPNVGKSSIFNRLCKRSLAIVNAQEGTTRDRLYGEIRAWDSIVHVIDTGGVDQ 60

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKSD 330
           E+ D  +K+  K+     E A ++LL+ +I    +K++    K         I +  K+D
Sbjct: 61  ESTDRFQKQIHKQALAAAEEASVLLLVVDIRCGITKQDEELAKRLLPLKKPLILVMNKAD 120

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
                   ++            S+   + ++ L+ +I+ + 
Sbjct: 121 SQQDLQRIHEFYGLGISNMIATSASHDKHIDVLLERIRQVA 161


>gi|256823051|ref|YP_003147014.1| small GTP-binding protein [Kangiella koreensis DSM 16069]
 gi|256796590|gb|ACV27246.1| small GTP-binding protein [Kangiella koreensis DSM 16069]
          Length = 467

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 18/224 (8%)

Query: 125 LLEAESLADLISSETEM-QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
           + EA  +  L+ + T M      +       +      ++K+  I +       +S    
Sbjct: 79  ITEANIVLFLVDARTGMTAADEFVADHLRRQNKPIIVLVNKVDGIHADAALSDYYSLGYQ 138

Query: 184 VQNFSSKEVLNDILFLKNDI--SSHISQGKLGEII----RNGYKIVILGHSNAGKSSLFN 237
                +      +  L + I    H+      ++I      G K+ I+G  N GKS+L N
Sbjct: 139 TVLPLAAAHGRGVNTLVDTIFDELHLESNDEDQLIGYEKAQGLKLAIVGRPNVGKSTLVN 198

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFL 294
               ++  +V D+PGTTRD + I+++       + DTAG+R   +  + VEK  + +T  
Sbjct: 199 RFLGEERVVVYDLPGTTRDSIYIEMERRDKKYTLIDTAGVRRRGKVKETVEKFSVLKTLQ 258

Query: 295 EVENADLILLLKEINSK---KEISFP-----KNIDFIFIGTKSD 330
            ++++++ +++ +       +++S            +    K D
Sbjct: 259 AIDDSNVSIMVMDAREPITDQDLSLISYIIDSGRSMVIAINKWD 302



 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 17/169 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   A+V ++PG TRD       L+G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTLFNRLTKSRDALVANLPGLTRDRQYGQATLKGQKFIVVDTGGIAGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD--- 330
           + ++     ++ L +  A+++L L +  +          +    +N   I +  K D   
Sbjct: 65  EGIDGLMAGQSLLAITEANIVLFLVDARTGMTAADEFVADHLRRQNKPIIVLVNKVDGIH 124

Query: 331 ----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               L   Y+  Y     +++  G G+  L++ I   L  +       I
Sbjct: 125 ADAALSDYYSLGYQTVLPLAAAHGRGVNTLVDTIFDELHLESNDEDQLI 173


>gi|122702541|emb|CAL88460.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGTPKSFNISVSHNRGISALIDAILSALN 167


>gi|302342246|ref|YP_003806775.1| ribosome-associated GTPase EngA [Desulfarculus baarsii DSM 2075]
 gi|301638859|gb|ADK84181.1| ribosome-associated GTPase EngA [Desulfarculus baarsii DSM 2075]
          Length = 479

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 11/127 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           +  ++ ++G  N GKSSL NAL      +V+D+PGTTRD +   + +      I DTAGI
Sbjct: 207 DEIRVALIGRPNVGKSSLLNALFGGPRVVVSDVPGTTRDAVDTPIQVGDKKYVIIDTAGI 266

Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIG 326
           R    +   +EK G+ R+   ++ A +++ + E               +  +N   I + 
Sbjct: 267 RRRGKVAPGIEKAGVFRSLRAIDRAHVVVAMMEAGEGVTDQDLHLIGAAMEQNRALIVVM 326

Query: 327 TKSDLYS 333
            K DL +
Sbjct: 327 NKWDLLA 333



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+LFN L +   A+V D+PG TRD L     ++   V + DT G     
Sbjct: 5   MAIVGRPNVGKSTLFNRLTRTRQALVHDLPGVTRDRLYGRAIIDDRQVTVIDTGGFDPPA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLY 332
           D     E   +  + +E ADLIL + +  +     ++             I    K D  
Sbjct: 65  DQPFAAEVHAQIAMAMEEADLILFVCDGRAGLNPADLEIATRLRRSQKPVIHAVNKIDGP 124

Query: 333 STYTE---------EYDHLISSFTGEGLEELINKIKSILS 363
               E         E  H IS+  G G+ +L + I + L 
Sbjct: 125 RQEDEASEFFALGVEKLHFISAAHGYGMSDLADDILAHLP 164


>gi|302808277|ref|XP_002985833.1| hypothetical protein SELMODRAFT_123195 [Selaginella moellendorffii]
 gi|300146340|gb|EFJ13010.1| hypothetical protein SELMODRAFT_123195 [Selaginella moellendorffii]
          Length = 492

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 18/176 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            L  D++S I + +       G     + I+G  N GKSS+ NA+  K+  IV+ + GTT
Sbjct: 185 DLLEDVTSAIKEKQDELEASEGDRPLSVAIIGRPNVGKSSILNAIVGKERTIVSPVSGTT 244

Query: 255 RDVLTIDLD-LEGYLVKISDTAGIRETDDI------VEKEGIKRTFLEVENADLILLLKE 307
           RD +  ++   EG + ++ DTAGIR+   I       E   ++     +  AD++ L+ E
Sbjct: 245 RDAIDTEVTGPEGKVFRLIDTAGIRKRAAIASGGSKTESLCVQSALRAIRRADVVALVIE 304

Query: 308 I-------NSKKEISFPKNIDFI-FIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
                   + +      K+      +  K D       E  +       E L  L 
Sbjct: 305 AMTCATEQDYRLGERIEKDGKACIIVVNKWDTVPDKNAESTYWYDMDVREKLRVLK 360



 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 68/194 (35%), Gaps = 42/194 (21%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+LFN +  +++AIV D PG TRD L   +        + DT G+   
Sbjct: 11  KVAIVGRPNVGKSALFNRIVGRNMAIVHDEPGVTRDRLYGRVRGSVQEFMLIDTGGVLTI 70

Query: 281 DDIVEK----------------------EGIK-RTFLEVENADLILLLKEINS---KKEI 314
               E                         I+ +    VE A  ++ + +  +     +I
Sbjct: 71  PTSAESGLAGGSVAAAQAKKDAAAAGLPSMIEQQAASAVEEACALVFVVDGQAGLTSADI 130

Query: 315 SFP-------KNIDFIFIGTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKI 358
                     K+        K +       +              S+ +G G+ +L+  +
Sbjct: 131 EIGNWLRRKFKHKKIALAVNKCESPKKGLLQAAEFWSLGFTPVPVSAISGSGVPDLLEDV 190

Query: 359 KSILSNKFKKLPFS 372
            S +  K  +L  S
Sbjct: 191 TSAIKEKQDELEAS 204


>gi|258516219|ref|YP_003192441.1| GTP-binding protein Era [Desulfotomaculum acetoxidans DSM 771]
 gi|257779924|gb|ACV63818.1| GTP-binding protein Era [Desulfotomaculum acetoxidans DSM 771]
          Length = 300

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 23/223 (10%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  E  R+G+ + I+G  N GKS+L N +  + +AI++D P TTR  +   L  + Y V 
Sbjct: 2   ESKEQFRSGF-VAIIGRPNVGKSTLMNRMIGRKIAIMSDKPQTTRHKIYCVLTRDNYQVI 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDF 322
             DT GI +    + +  +  +       DLIL L E NS          E         
Sbjct: 61  FLDTPGIHKPKHKLGQHLVDTSLSTFGEVDLILFLVEANSFCGAGDRYILEHLAKIKTPV 120

Query: 323 IFIGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             +  K D             L+S Y  +    +S+  G+ ++ L   I   L    K  
Sbjct: 121 FLVINKVDLVPKEQLLPLIDELHSKYKFQEVIPVSALNGDNVDRLERLIAGCLPPGPKYY 180

Query: 370 PFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRL 411
           P  + + K   + +++ +R  +   +  E    + +I E L  
Sbjct: 181 PDDMLTDKPEQFIMAELIREKILHLTSQEIPHSVAVIVEQLEE 223


>gi|122702845|emb|CAL88612.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122701425|emb|CAL88102.1| GTPase [Helicobacter pylori]
 gi|122701427|emb|CAL88103.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|317178805|dbj|BAJ56593.1| GTP-binding protein EngA [Helicobacter pylori F30]
          Length = 461

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 25/180 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTTDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKSD 330
             I  +EK  ++RT   +E + + LL+ ++++      ++IS   +      I I  K D
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +     EE                    S      ++E+ +KI  +     K++P S+ +
Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKVRHIDEIKHKIIEVYECFSKRIPTSLLN 380



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 28/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERAYAFSSF-----------------GMPKSFNISVSHNRGISALIDAILNALNLN 170

Query: 394 SLNEKDCGLDII 405
            + E+D   DI+
Sbjct: 171 QIIEQDLDADIL 182


>gi|218961273|ref|YP_001741048.1| Fe-hydrogenase assembly protein (C-terminal fragment); GTPase
           activity domain [Candidatus Cloacamonas acidaminovorans]
 gi|167729930|emb|CAO80842.1| Fe-hydrogenase assembly protein (C-terminal fragment); GTPase
           activity domain [Candidatus Cloacamonas acidaminovorans]
          Length = 405

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 22/172 (12%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +S    GE +     I I+G  NAGKSSL NAL  +D+AIV+ +PGTT D +    +L  
Sbjct: 1   MSSTPRGERL----NIAIIGKRNAGKSSLINALVGQDIAIVSAVPGTTTDPVDKRYELLP 56

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--KKEISFPKNI--- 320
              V   DTAG+ +T ++ EK  IK T   +  AD+ + + + N+    E+   + I   
Sbjct: 57  LGPVTFFDTAGVDDTGELGEKR-IKATQKILYRADIAIFVSDGNAFNNAELKMIEKIREM 115

Query: 321 --DFIFIGTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSI 361
               + +  K D+     E               SS T EG++E   K+  +
Sbjct: 116 ELPMLIVFNKKDIIPVCQENIAFCQKYSLPYISVSSVTKEGIDECKEKLIQL 167


>gi|187778474|ref|ZP_02994947.1| hypothetical protein CLOSPO_02068 [Clostridium sporogenes ATCC
           15579]
 gi|226950371|ref|YP_002805462.1| GTP-binding protein Era [Clostridium botulinum A2 str. Kyoto]
 gi|254783292|sp|C1FVS6|ERA_CLOBJ RecName: Full=GTPase Era
 gi|187772099|gb|EDU35901.1| hypothetical protein CLOSPO_02068 [Clostridium sporogenes ATCC
           15579]
 gi|226842790|gb|ACO85456.1| GTP-binding protein Era [Clostridium botulinum A2 str. Kyoto]
          Length = 296

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 87/209 (41%), Gaps = 24/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NA+ K+ ++IV+  P TTR+ +   L  + Y +   DT GI +  
Sbjct: 7   VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             + +  +K     +++ DL+L L   + K         E      +    +  K D   
Sbjct: 67  HKLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKIDENP 126

Query: 331 ------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    TY+E    +    IS+  G+ ++ L   +   +    +  P  +   +   
Sbjct: 127 QEKVAETLKTYSELMEFQEIIPISALKGKNVDLLKELMFKYIPEGPQYYPEDMIIDQNER 186

Query: 381 YHLSQTVRYLEMASLNE---KDCGLDIIA 406
           + +++ VR   +  L+E       ++I+ 
Sbjct: 187 FIVAEIVREKALRLLSEEVPHGIAVEILQ 215


>gi|163761004|ref|ZP_02168082.1| GTP-binding protein EngA [Hoeflea phototrophica DFL-43]
 gi|162281785|gb|EDQ32078.1| GTP-binding protein EngA [Hoeflea phototrophica DFL-43]
          Length = 499

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 18/164 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
             + I+G  N GKS+LFN LA + +A+V D PG TRD    D  L      + DTAG+  
Sbjct: 3   LTLAIVGRPNVGKSTLFNRLAGRKLALVDDTPGVTRDRRPGDARLVDLRFTMIDTAGLEV 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
              D +E     +T   ++ AD  + L +  +          +I   +    + +  K++
Sbjct: 63  SGPDTLEGRMRAQTEAAIDEADGAMFLIDAKAGLTPADELLADILRKRGKPVVLVANKAE 122

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNK 365
              + +   D            S+  G G+ +L + I      +
Sbjct: 123 AKGSESGMLDAWRLGLGEPCPVSAEHGGGMLDLRDAIVEAFGEE 166



 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 31/192 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  NAGKS+L N    +D  +     G TRD + +D + +G  +K+ DTAG+R 
Sbjct: 204 LRVAIVGRPNAGKSTLINQFLGQDRLLTGPEAGITRDSIAVDFEWKGRKIKLFDTAGLRR 263

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      +  A++++++ +     E        +   +    +    K
Sbjct: 264 KARVQEKLEKLSVADALRAIRFAEVVVIVFDSTIPFEKQDLQIADLVVREGRAPVIAFNK 323

Query: 329 SDLYSTYTEEY------------------DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL     E+                      ++  TGEGLE L+  I  +     K++ 
Sbjct: 324 WDLIDNRQEKLAELREMTDRLLPQIRGIRAVTVAGQTGEGLERLMENIALVHRVWNKRIS 383

Query: 371 FSIPSHKRHLYH 382
                  R L H
Sbjct: 384 T--AKLNRWLDH 393


>gi|157826088|ref|YP_001493808.1| GTP-binding protein EngA [Rickettsia akari str. Hartford]
 gi|166225849|sp|A8GPH5|DER_RICAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157800046|gb|ABV75300.1| GTP-binding protein EngA [Rickettsia akari str. Hartford]
          Length = 447

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 15/159 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   IALVGRPNVGKSTLFNRLSIRKKAIVHDLPGITRDRKYTDGKIGSFEFLLIDTPGLEENH 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLYS 333
           D +    +++T   +  ADLI  + +       N K   SF +  N   I +  K +   
Sbjct: 66  DSMGARLMEQTTKAILEADLICFMVDGRSGILPNDKLLGSFVRKYNKPAILVVNKCEKAF 125

Query: 334 TYTEEYDH-------LISSFTGEGLEELINKIKSILSNK 365
            + +EY          IS+  G GL +L ++I + L  +
Sbjct: 126 DFDKEYYKLGFDSMVTISAEHGTGLIDLYDEIITKLPEE 164



 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 15/150 (10%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           +  I ++I+    G+ ++    IV+ G  NAGKS+  NAL   +  +     G TR+ + 
Sbjct: 164 EESIETNIADPIKGDYLQ----IVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIE 219

Query: 260 IDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK---KE 313
           ID   +   +K+ DTAG+R+     + +EK         ++ A+ ++L+ +  +    ++
Sbjct: 220 IDWHYKNNHIKLIDTAGLRKKSTITESLEKLSASDAINSIKFANTVILMIDALAPLKQQD 279

Query: 314 ISFP-----KNIDFIFIGTKSDLYSTYTEE 338
           ++       +    + +  K DL     +E
Sbjct: 280 LNIASHVVNEGRGIVIVVNKWDLVKESKKE 309


>gi|167041117|gb|ABZ05877.1| putative GTPase of unknown function [uncultured marine
           microorganism HF4000_001A02]
          Length = 438

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 73/165 (44%), Gaps = 17/165 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRN--GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L + +   +       I+    G ++ I+G  N GKSSL NAL KK+ +IVT I GTTR
Sbjct: 155 DLLDLVLKQLDLKDRPPIVEEDKGMRLAIVGMPNVGKSSLTNALLKKEQSIVTPIAGTTR 214

Query: 256 DVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN--- 309
           D +   L   G  + + DTAG+R+     D +E     RT   +E  D+ L+L +     
Sbjct: 215 DSIDSVLKYYGNEITLVDTAGLRKRSKVSDSIEFYSSLRTQRAIEYCDVALVLIDGEKGF 274

Query: 310 -----SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
                S  +    K    I +  K DL    T    H +  FT E
Sbjct: 275 SKQDKSILDYVIKKGKGLILLVNKWDLVDKDT----HTMKDFTDE 315



 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280
           I I+G  N GKS+ FN + ++  AIV  + G TRD +  D+D  G+ +   DT G I E 
Sbjct: 6   IAIVGRPNVGKSTFFNRVLRQRKAIVDAMEGITRDRIYGDMDWVGHNLTFVDTGGYIPED 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLY 332
            DI      ++    V  ADLILL+ +       S               I +  K D  
Sbjct: 66  VDIFNSAIRQQAQAAVAEADLILLMVDGREDPTASDKTLAQFVRETGKKSILVVNKCDTL 125

Query: 333 S---------TYTEEYDHLISSFTGEGLEELINKIKSIL 362
           +             E  H +SS +G    +L++ +   L
Sbjct: 126 ALDEQVNGFYKLGIEPMHPVSSLSGRLTGDLLDLVLKQL 164


>gi|297172559|gb|ADI23529.1| predicted GTPase [uncultured Gemmatimonadales bacterium
           HF0770_41L09]
          Length = 79

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASVSLGKITG 421
                 +     + +RHL  L Q   +L+            +++AE LRLA  +L +ITG
Sbjct: 1   MGFDTNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGELLAEELRLAQQNLSEITG 60

Query: 422 CVDVEQLLDIIFSKFCIGK 440
               + LL  IFS FCIGK
Sbjct: 61  EFTSDDLLGRIFSSFCIGK 79


>gi|313683277|ref|YP_004061015.1| ribosome-associated GTPase enga [Sulfuricurvum kujiense DSM 16994]
 gi|313156137|gb|ADR34815.1| ribosome-associated GTPase EngA [Sulfuricurvum kujiense DSM 16994]
          Length = 511

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 14/173 (8%)

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           +     +E    I  L+      + + + G++  N  K+ I+G  N GKSSL NAL  +D
Sbjct: 206 IPEEDDEEEETSIEALEEAYRGIVKEYEAGDV--NQMKVAIIGRVNVGKSSLLNALLGED 263

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADL 301
            ++V+ + GTT D +   ++     +   DTAGIR+   I  +EK  + RT   +E AD+
Sbjct: 264 RSVVSSVAGTTIDPIDETVEYNDKKITFIDTAGIRKRGKILGIEKYALMRTEEMLETADI 323

Query: 302 ILLLKEINSKKEISFPKNIDFI--------FIGTKSDLYSTYTEEYDHLISSF 346
            LL+ + +        K   F+         +  K D+     E+YD +I+  
Sbjct: 324 ALLVLDASQPFMDLDEKIAGFVDKNRLACLIVLNKWDMAPR--EDYDKIIAEV 374



 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSSLFN L K+  AI ++  GTTRDV      +    V+I DT G+ E 
Sbjct: 3   KLAIIGRPNVGKSSLFNRLLKQRDAITSEQAGTTRDVKKRVAVVVDKEVEILDTGGLDEG 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD-- 330
            ++      +++      AD+IL + +  S  E    K              +  K D  
Sbjct: 63  CELY-DRIKEKSLKAAHEADIILFMVDGKSLPEEDDKKLFYELESMGKAIALVVNKIDND 121

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYH 382
                   Y  +  +    IS      L  L+N I S L      K    +   +  L  
Sbjct: 122 KMQEKLWEYYEFGTDRIFGISVAHNRSLLPLLNWIASELPESSIVKTENDVVVAEDELDG 181

Query: 383 LSQTVRY 389
               +R 
Sbjct: 182 FDAAMRA 188


>gi|122701557|emb|CAL88168.1| GTPase [Helicobacter pylori]
 gi|242255830|gb|ACS88899.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|126739021|ref|ZP_01754715.1| GTP-binding protein EngA [Roseobacter sp. SK209-2-6]
 gi|126719638|gb|EBA16346.1| GTP-binding protein EngA [Roseobacter sp. SK209-2-6]
          Length = 489

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 9/120 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEAKLGDLRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ +E    + T   V+ AD+ L + +  +          EI   K+   I    K++
Sbjct: 63  ATDNSLEGRMRRLTERAVDMADICLFMVDARAGITPVDEVFAEILRRKSAHVILAANKAE 122



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 80/187 (42%), Gaps = 29/187 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D  G  ++I DTAG+R+
Sbjct: 204 LQVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQVDWSGTPMRIFDTAGMRK 263

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      V+ A+++++L + +   E        ++  +    +    K
Sbjct: 264 KAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDADIPFEQQDLRIADLAEREGRAVVVAVNK 323

Query: 329 SDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D+     E+                      +S+ TG+GLE L + I        +++P
Sbjct: 324 WDIEDNKQEKLRDLKEAFGRLLPQLRGAPLITVSAKTGKGLERLHDAIMRAYDVWNRRIP 383

Query: 371 FSIPSHK 377
            +  +  
Sbjct: 384 TAALNRW 390


>gi|308062155|gb|ADO04043.1| GTP-binding protein EngA [Helicobacter pylori Cuz20]
          Length = 461

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 28/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L++ 
Sbjct: 128 DKEKERAYAFSSF-----------------GMPKSFNISVSHNRGISALIDAILSALDLN 170

Query: 394 SLNEKDCGLDII 405
            + E+D   DI+
Sbjct: 171 QIIEQDLDADIL 182



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 25/180 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKSD 330
             I  +EK  ++RT   +E + + LL+ ++++      ++IS   +      I I  K D
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +     EE                    S      ++E+ +KI  +     K++P S+ +
Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSLLN 380


>gi|261837935|gb|ACX97701.1| GTP-binding protein [Helicobacter pylori 51]
          Length = 461

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 28/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L++ 
Sbjct: 128 DKEKERAYAFSSF-----------------GMPKSFNISVSHNRGISALIDAILSALDLN 170

Query: 394 SLNEKDCGLDII 405
            + E+D   DI+
Sbjct: 171 QIIEQDLDADIL 182



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 25/180 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKSD 330
             I  +EK  ++RT   +E + + LL+ ++++      ++IS   +      I I  K D
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +     EE                    S      ++E+ +KI  +     K++P S+ +
Sbjct: 321 IRYAPYEEIMAALKRKFRFLEYAPVITTSCLKTRHIDEIKHKIIEVYECFSKRIPTSLLN 380


>gi|58040398|ref|YP_192362.1| GTP-binding protein EngA [Gluconobacter oxydans 621H]
 gi|58002812|gb|AAW61706.1| GTP-binding protein [Gluconobacter oxydans 621H]
          Length = 463

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 18/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           +VI G  N GKS+LFN L  +  AIV+D+PG TRD    +  L G  V++ DTAG+ E  
Sbjct: 13  VVIAGRPNVGKSTLFNRLVGRRQAIVSDMPGVTRDRKEGEALLRGRRVRLIDTAGLEEAA 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D +       +   V  ADL+L   +  S               +N   + I  K++  
Sbjct: 73  PDTLYGRMRASSESAVAMADLVLFCIDARSGITPADAHFASWLRRQNRPVLLIANKAEGQ 132

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKK 368
           +      +            S+  GEG+ +L+ +I   L    K 
Sbjct: 133 AGTNAALEAYSLGLGTPLALSAEHGEGIADLMGEIAERLPPAEKS 177



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 111/326 (34%), Gaps = 49/326 (15%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET----EMQRRLSMEGMSGE 153
            L     L  A P     R   + +  +  A+ +   I + +          S       
Sbjct: 61  RLIDTAGLEEAAPDTLYGRMRASSESAVAMADLVLFCIDARSGITPADAHFASWLRRQNR 120

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI------ 207
              L     +      + +EA   +S         S E    I  L  +I+  +      
Sbjct: 121 PVLLIANKAEGQAGTNAALEA---YSLGLGTPLALSAEHGEGIADLMGEIAERLPPAEKS 177

Query: 208 -------SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
                  ++G+  E      ++ I+G  NAGKS+L N L  ++  I     G TRD +T+
Sbjct: 178 RRREAPKAEGEEDERPAGPLRLAIIGRPNAGKSTLLNCLLGEERMITGPEAGLTRDSITV 237

Query: 261 DLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEI 314
           +L  E   +++ DTAG+R+   +    EK  +  +   ++ A++++L+ +      ++++
Sbjct: 238 ELHDEHGPIQLVDTAGMRKRARVEQHLEKMSVSASIEALKMAEVVVLVIDATLGVHEQDL 297

Query: 315 SF-----PKNIDFIFIGTKSDLY------------------STYTEEYDHLISSFTGEGL 351
                   +    +    K D                    +          S+ TG G+
Sbjct: 298 QIGRLIEREGRACVIALNKWDAVEDRNATKKAILDRLEISLAQVRGIPVVTFSALTGAGV 357

Query: 352 EELINKIKSILSNKFKKLPFSIPSHK 377
             L+  ++ +      ++     +  
Sbjct: 358 HRLLPAVREVYEIWNSRVSTGELNRW 383


>gi|122702635|emb|CAL88507.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT GI + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGIAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALN 167


>gi|122701577|emb|CAL88178.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALN 167


>gi|317014244|gb|ADU81680.1| GTP-binding protein Der [Helicobacter pylori Gambia94/24]
          Length = 463

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 25/202 (12%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
              +   + +  +  K         ++ I+G  N GKSSL NAL KK+ ++V+ + GTT 
Sbjct: 178 DADILESLEASNNASKEENKEEEIIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTI 237

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK-- 311
           D +   + +    +   DTAGIR    I  +EK  ++RT   +E + + LL+ ++++   
Sbjct: 238 DPIDETILIGDQKICFVDTAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFV 297

Query: 312 ---KEISFPKNID---FIFIGTKSDLYSTYTEEY---------------DHLISSFTGEG 350
              ++IS   +      I I  K D+     EE                    S      
Sbjct: 298 ELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARH 357

Query: 351 LEELINKIKSILSNKFKKLPFS 372
           ++E+ +KI  +     K++P S
Sbjct: 358 MDEIKHKIIEVYECFSKRIPTS 379



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 92/202 (45%), Gaps = 29/202 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERAYAFSSF-----------------GVPKSFNISVSHNRGISALIDAVLNALNLN 170

Query: 394 SLNEKDCGLDIIAENLRLASVS 415
            + E+D   DI+ E+L  ++ +
Sbjct: 171 QIIEQDLDADIL-ESLEASNNA 191


>gi|309789730|ref|ZP_07684310.1| GTP-binding protein Era [Oscillochloris trichoides DG6]
 gi|308228216|gb|EFO81864.1| GTP-binding protein Era [Oscillochloris trichoides DG6]
          Length = 466

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 96/247 (38%), Gaps = 24/247 (9%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
            +L  + + + A  +  +  +       +   +      D+        L    R+G+ +
Sbjct: 120 QRLARLAALMVALDEVPQAGEGPVVFGVDEEEEEEETAPDVPDAAEHAPLA-TFRSGF-V 177

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G  N GKS+L N L  + V IV+    TTR  +   L      V   DT GI +   
Sbjct: 178 ALVGKPNVGKSTLLNTLLGQKVTIVSPRAQTTRVPVRGILSRPDAQVVFIDTPGIHQPSH 237

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYS 333
            + K  ++     + NAD+I  + +I+           +++   +      +  K D+  
Sbjct: 238 KLGKFMVELAERTLPNADVICFMVDISQPPSQLDRSIAEQVQRARAHKL-LLLNKVDIPP 296

Query: 334 ----TYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
               TY EEY        +  IS+  G+GL  L+++I + L N     P    + +    
Sbjct: 297 RRGTTYLEEYRSLGTWDMEMAISAQRGQGLSSLLDEIVARLPNGQPLYPNEQVTDQSEQQ 356

Query: 382 HLSQTVR 388
             ++ VR
Sbjct: 357 LAAELVR 363


>gi|292806440|gb|ADE42350.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALN 167


>gi|213857526|ref|ZP_03384497.1| tRNA modification GTPase TrmE [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
          Length = 71

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 3  HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62
           + +TI A +T      + I+R+SG    +V E +   K P PR A    F   DG +LD
Sbjct: 2  SDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG-KLPKPRYADYLPFKDADGSVLD 60

Query: 63 KGLLIVFPSPE 73
          +G+ + FP P 
Sbjct: 61 QGIALWFPGPN 71


>gi|329121358|ref|ZP_08249984.1| GTP-binding protein Era [Dialister micraerophilus DSM 19965]
 gi|327469767|gb|EGF15233.1| GTP-binding protein Era [Dialister micraerophilus DSM 19965]
          Length = 307

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 85/209 (40%), Gaps = 22/209 (10%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E   +G+ I ++G  N GKS+L N +  + ++IV+    TTR+ +T   + E   + 
Sbjct: 8   DNEEKFHSGF-IALVGRPNVGKSTLLNTVLGEKISIVSAHAQTTRNKITGVWNGENSQIV 66

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDF 322
             DT G+ +    + +   + T   +   D++++L   +            +   K    
Sbjct: 67  FLDTPGMHKPKSKLGEVIRQSTVDAIGEVDIVVMLCACDDPPGAGDRYLLSLLENKKTPV 126

Query: 323 IFIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           + +  K DL S              Y  +    +S+ TG  ++EL+  ++ +L    K  
Sbjct: 127 VLVLNKIDLVSEVAILKKIKQYSQMYNFKEIIPVSAQTGRNMDELMQVLEKMLPEGPKYF 186

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           P  + + +     + + VR   +   +E+
Sbjct: 187 PDDMITDQPERIIVQEIVREKILLRTHEE 215


>gi|122702657|emb|CAL88518.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVLN 167


>gi|122701517|emb|CAL88148.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L+++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS+    G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISASHNRGISTLIDAILNALN 167


>gi|110596891|ref|ZP_01385181.1| Small GTP-binding protein domain:GTP-binding [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341578|gb|EAT60038.1| Small GTP-binding protein domain:GTP-binding [Chlorobium
           ferrooxidans DSM 13031]
          Length = 437

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 19/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + ++  AIV   PG TRD    D + +G    + DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRILRQRSAIVDSTPGVTRDRHIADGEWQGKQFLLMDTGGYNAES 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPK-------NIDFIFIGTKSDL 331
           D++ K  +++T + + +AD+I+ + +  +    +++   K       N    F   K + 
Sbjct: 65  DLISKAMLEQTLMAIRDADIIVFVTDARAGLSYEDLELGKLLKRNFQNKQLFFAVNKVES 124

Query: 332 YSTYTEE---------YDHLISSFTGEGLEELINKIKSILSN 364
                E            + IS+  G G+ ++++ I      
Sbjct: 125 PQLIIEAESFISTGFTKPYFISAKDGSGVADMLDDILETFPE 166



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 11/126 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N GKSS  NAL   +  IV+ I GTTRD +      +     + DTAG+R+
Sbjct: 178 ISLAIVGRPNVGKSSFVNALLNSNRHIVSSIAGTTRDAIDSRFTRKKQEFVLIDTAGLRK 237

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
               D  +E     RT   +E  D+ L++ +     E        ++  K    + +  K
Sbjct: 238 RTKIDRGIEYYSSLRTEKALERCDVALVMLDATPGIEKQDLKIINMAVEKKKGALLLVNK 297

Query: 329 SDLYST 334
            DL   
Sbjct: 298 WDLIEK 303


>gi|122700721|emb|CAL87949.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVL 166


>gi|115377683|ref|ZP_01464876.1| GTP-binding protein EngA [Stigmatella aurantiaca DW4/3-1]
 gi|310821559|ref|YP_003953917.1| GTP-binding protein EngA [Stigmatella aurantiaca DW4/3-1]
 gi|115365289|gb|EAU64331.1| GTP-binding protein EngA [Stigmatella aurantiaca DW4/3-1]
 gi|309394631|gb|ADO72090.1| GTP-binding protein EngA [Stigmatella aurantiaca DW4/3-1]
          Length = 462

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 15/181 (8%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNA 238
           +V   S++  L     ++  +       +G+  E + +    ++ I+G  N GKS++ NA
Sbjct: 142 EVMPLSAEHALGVPQLVEAVLDRLPPKQEGEDAEALPDDGTLRVAIIGRPNVGKSTMVNA 201

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLE 295
           + K+   + +++PGTTRD +   L  +G+ + ++DTAGIR    I   VE+  +      
Sbjct: 202 ILKEKRVVASEVPGTTRDPIDSALTYKGHKLILTDTAGIRRKRSIAHRVEQFSVVSALKV 261

Query: 296 VENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
           ++ +D+ +LL +              ++  K    + +  K DL  T     +    +  
Sbjct: 262 MDRSDVAVLLMDATEPAVDQDAKLAGLAEDKGRALVIVVNKWDLIGTDQRRQEAYREALK 321

Query: 348 G 348
            
Sbjct: 322 H 322



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 67/170 (39%), Gaps = 20/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN LA + +A+V D PG TRD    D         + DT G    +
Sbjct: 5   VAIVGRPNVGKSTLFNRLAGRRLALVEDEPGVTRDRHYADAQWGDRAFTLIDTGGFVPGE 64

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK---- 328
            D + K+  ++  L VE  D+IL + +  +           +        +    K    
Sbjct: 65  KDSLLKQVREQAQLAVEECDVILFVTDGRAGLTSADEAVAGLLRKSGKPVVVAANKLDNA 124

Query: 329 SDLYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPF 371
           SD     + E+  +        S+    G+ +L+  +   L  K +    
Sbjct: 125 SDSMQALSGEFFRMGLGEVMPLSAEHALGVPQLVEAVLDRLPPKQEGEDA 174


>gi|122702619|emb|CAL88499.1| GTPase [Helicobacter pylori]
 gi|122702667|emb|CAL88523.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166


>gi|122701651|emb|CAL88215.1| GTPase [Helicobacter pylori]
 gi|122701653|emb|CAL88216.1| GTPase [Helicobacter pylori]
 gi|122701669|emb|CAL88224.1| GTPase [Helicobacter pylori]
 gi|122702187|emb|CAL88284.1| GTPase [Helicobacter pylori]
 gi|122702191|emb|CAL88286.1| GTPase [Helicobacter pylori]
 gi|122702197|emb|CAL88289.1| GTPase [Helicobacter pylori]
 gi|122702201|emb|CAL88291.1| GTPase [Helicobacter pylori]
 gi|122702685|emb|CAL88532.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       +S     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNVSVSHNRGISALIDAILSALN 167


>gi|227549322|ref|ZP_03979371.1| GTP-binding protein EngA [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078641|gb|EEI16604.1| GTP-binding protein EngA [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 497

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 34/222 (15%)

Query: 197 LFLKNDISSHISQGKLGE--IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
             + ++I             I     ++ I+G  N GKSSL N L++ + ++V ++ GTT
Sbjct: 210 ADVLDEILRLFPAVPRAADSITEGPRRVAIVGRPNVGKSSLLNKLSRSNRSVVDNVAGTT 269

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            D +   + L+G L K  DTAG+R+        E     RT   +E A++ ++L + + +
Sbjct: 270 VDPVDELIQLDGALWKFIDTAGLRKKVKNARGHEYYASLRTRGTIEAAEVCVVLIDASQE 329

Query: 312 --------KEISFPKNIDFIFIGTKSDLYST-----YTEEYDHLI-----------SSFT 347
                     +        +    K DL        +  E+D ++           S+ T
Sbjct: 330 ISEQDQRVISMVLEAGKAMVICFNKWDLMDEDRRYYFDREFDEMMGHLPWVTKLNISADT 389

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           G GL  L   +   L N  K++     ++      L +T+  
Sbjct: 390 GRGLHRLEAAMTEALENWDKRISTGQLNNW-----LRETIAA 426



 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 88/226 (38%), Gaps = 23/226 (10%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSN 229
           F +++ D SE  +     ++    D   L+ +           E++      + I+G  N
Sbjct: 16  FNDSEFDDSEFGEADFGEAELNDEDWAALEEEF-----GAAGPEMVEEALPTVSIVGRPN 70

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKS+L N    +  A+V D PG TRD ++   D  G    + DT G       +     
Sbjct: 71  VGKSTLVNRFIGRREAVVEDHPGVTRDRVSYISDWNGRRFWVQDTGGWDPDARGLHAAIA 130

Query: 290 KRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKSDLYSTYTEEYDH 341
            ++   +E +D+I+++ +     ++ +    +N     +  I +  K +  S + +  + 
Sbjct: 131 HQSESAMETSDVIVMVVDSQTGITETDAVMARNLQRADVPVILVANKFESESQWGDVAEF 190

Query: 342 L---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                     +S+  G G  +++++I  +     +         +R
Sbjct: 191 YSLGLGDPWPVSALHGRGGADVLDEILRLFPAVPRAADSITEGPRR 236


>gi|122702217|emb|CAL88299.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALN 167


>gi|13357944|ref|NP_078218.1| GTP-binding protein EngA [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762344|ref|YP_001752466.1| GTP-binding protein EngA [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920231|ref|ZP_02931603.1| GTP-binding protein EngA [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508601|ref|ZP_02958112.1| GTP-binding protein EngA [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701797|ref|ZP_02971472.1| GTP-binding protein EngA [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|26006745|sp|Q9PQA7|DER_UREPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189037169|sp|B1AJ22|DER_UREP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|11280266|pir||B82899 conserved hypothetical ATP/GTP-binding protein UU383 [imported] -
           Ureaplasma urealyticum
 gi|6899367|gb|AAF30793.1|AE002135_9 conserved hypothetical ATP/GTP-binding protein [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827921|gb|ACA33183.1| GTP-binding protein EngA [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902626|gb|EDT48915.1| GTP-binding protein EngA [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182676057|gb|EDT87962.1| GTP-binding protein EngA [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701078|gb|EDU19360.1| GTP-binding protein EngA [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 442

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 11/125 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +  +K  I+G  N GKSSL N +  +   IV    G+TRD +  D +       I DTAG
Sbjct: 172 QERFKFCIIGRPNVGKSSLTNTILGEQRVIVNAEAGSTRDSIDNDFNYYNKKYTIIDTAG 231

Query: 277 IRETDDIVE---KEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
           IR    IVE   K  + RT   +E + LILL+ + +            +++  NI  I I
Sbjct: 232 IRRKGKIVESVEKYAVLRTKKAIERSQLILLVLDGSEPFKEQDEVVGGLAYNANIPTIII 291

Query: 326 GTKSD 330
             K D
Sbjct: 292 VNKWD 296



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 19/165 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSLFN +  +  +IV D PG TRD +    +       + DT GI  + 
Sbjct: 4   IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDIGNWLTRSFMLIDTGGIISSK 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS-----FPKNIDFIFIGTKSDL 331
           D  +    ++    +  A+ I+ L        N  K+I+       K+   I +  K + 
Sbjct: 64  DTYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAKDKKIILVINKIES 123

Query: 332 YSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFK 367
              Y  E +           IS+  G G+ +L++++   +  +  
Sbjct: 124 EKYYLNEGELYSFGFGKFFKISAEHGIGMGDLLDELVKDMPIQNN 168


>gi|311064384|ref|YP_003971109.1| GTP-binding protein [Bifidobacterium bifidum PRL2010]
 gi|310866703|gb|ADP36072.1| GTP-binding protein [Bifidobacterium bifidum PRL2010]
          Length = 711

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 72/415 (17%), Positives = 134/415 (32%), Gaps = 78/415 (18%)

Query: 49  SLRYFFGLDGRILDK-----GLLIVFPSPE----------SFT--GEDSAE--------- 82
            L     LDG  +D+      +   F              S T  GED +E         
Sbjct: 43  CLHQGIDLDGDQVDEQQITEAVAEFFTGDHFDIGVDPDHPSITADGEDISEAIRSSEVSS 102

Query: 83  -FHVHGGIAVVNGILEELAKMPNLRLANPGEFS-RRAFENGKIDLLEAES----LADLIS 136
                  +  V  +L    +    R +    FS  R       D+    +    +  L++
Sbjct: 103 HVSKVSNVIPVRHVLIAAQRAYIARESAADSFSLSRGIVAEGRDITTVVAPDAEVRVLLT 162

Query: 137 SETE--MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           +  E    RR         +        D+     +      D     D  + + ++ L+
Sbjct: 163 AREEVRQARRTGQAVAGAGVGGEDVAARDRADSKVTSFLTAADGVTTVDNSDMNFQQTLD 222

Query: 195 DILFLKNDI----------------------SSHISQGKLGEIIRNGYK-----IVILGH 227
            ++ L  D                          I+  + G    +        + ++G 
Sbjct: 223 VLITLVADAVEVQEYEQYAANLSDYELDEGDEQIIAGSRYGIEDESPAPKAVGVLAVVGR 282

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G     + +E  
Sbjct: 283 PNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWSGTEFKLVDTGGWEADVEGIESA 342

Query: 288 GIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSD--LYSTYTE 337
              +  + V+ +D ++L+ +      ++ + I                K D       T 
Sbjct: 343 IASQAQIAVQLSDAVILVVDGHVGLTDTDERIVKMLRASGKPVTLAVNKVDDGASEYLTA 402

Query: 338 EY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           E+        + IS+  G G+ +L++     L    K   F  P+H R +  + +
Sbjct: 403 EFWKLGMGEPYGISAMHGRGVGDLLDAALDSLRKADKTSGFLTPTHLRRVALVGR 457



 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA +  A+V D+ GTTRD +   +D++G      DTAGI+  
Sbjct: 451 RVALVGRPNVGKSSLLNQLAGEQRAVVNDLAGTTRDPVDETIDIDGEDWLFIDTAGIKRR 510

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKS 329
              V   +     RT   +E ++L L+L + +        K            + +  K 
Sbjct: 511 LHKVSGADYYSSLRTQAAIERSELALVLFDSSQPISDQDLKVMSQAVDAGRAVVLVFNKW 570

Query: 330 DLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL   +  +                    +S+ TG     L + +++ L +  K++P  
Sbjct: 571 DLMDDFGRQRLERLWKTEFNRVTWAQRVNLSAKTGWHTNRLADAMRNALESWDKRIPTG 629


>gi|242255840|gb|ACS88904.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHKVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|237713807|ref|ZP_04544288.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409286|ref|ZP_06085829.1| GTP-binding protein Era [Bacteroides sp. 2_1_22]
 gi|294644703|ref|ZP_06722452.1| small GTP-binding protein domain protein [Bacteroides ovatus SD CC
           2a]
 gi|294805936|ref|ZP_06764803.1| small GTP-binding protein domain protein [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229446254|gb|EEO52045.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352738|gb|EEZ01835.1| GTP-binding protein Era [Bacteroides sp. 2_1_22]
 gi|292639966|gb|EFF58235.1| small GTP-binding protein domain protein [Bacteroides ovatus SD CC
           2a]
 gi|294446818|gb|EFG15418.1| small GTP-binding protein domain protein [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 396

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V++ PGTT D+++  ++++G       DT G
Sbjct: 10  NRLHITLFGRRNSGKSSLINALTGQDTALVSNTPGTTTDLVSKAMEIQGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISF---PKNIDFIFIGTKSD 330
             +  ++ E   I RT   +E  D+ LLL E  +   +KEI      KNI  I +  K D
Sbjct: 70  FDDEGELGELR-ISRTLKAIEKTDIALLLCEDTTFFHEKEILALLKEKNIPVIPVLNKID 128

Query: 331 L------YSTYTEEY----DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +       +TY EE       LIS+    G+E +   I   L + F +   +
Sbjct: 129 IRENSDHLATYIEEQCKISPLLISAKEKIGIELIRQAILEKLPSDFDQQNIT 180


>gi|210617164|ref|ZP_03291431.1| hypothetical protein CLONEX_03653 [Clostridium nexile DSM 1787]
 gi|210149439|gb|EEA80448.1| hypothetical protein CLONEX_03653 [Clostridium nexile DSM 1787]
          Length = 299

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 90/214 (42%), Gaps = 22/214 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L +E   +   DT 
Sbjct: 5   YKSGF-VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTMEEGQIVFVDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGT 327
           GI +  + + +  +      +   D++L L E ++     +K I+          + +  
Sbjct: 64  GIHKAKNKLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEKHIADQLKKVKTPVVLVIN 123

Query: 328 KSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D             Y + YD      +S+ +GE  +EL+  I   L    +       
Sbjct: 124 KVDMVKREEVLTFIDAYRKIYDFAEIVPVSARSGENTDELVKVILQYLPYGPQFYDEDTV 183

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           + +     +S+ +R   +  LNE+      ++ +
Sbjct: 184 TDQPERQIVSELIREKALHCLNEEIPHGIAVSID 217


>gi|169629458|ref|YP_001703107.1| GTP-binding protein EngA [Mycobacterium abscessus ATCC 19977]
 gi|169241425|emb|CAM62453.1| Probable GTP-binding protein EngA [Mycobacterium abscessus]
          Length = 466

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 87/232 (37%), Gaps = 28/232 (12%)

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ-GKLGEIIRNGYKIVILGH 227
           R+  +A + +S         S      +  L + + + + +    G       ++ ++G 
Sbjct: 152 RAEADAAVLWSLGLGEPMPISAMHGRGVADLLDRVVADLPEISARGSGEGGPRRVALVGK 211

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIV 284
            N GKSSL N L+    A+V D  GTT D +   ++L G   +  DTAG+R         
Sbjct: 212 PNVGKSSLLNRLSGDQRAVVHDTAGTTVDPVDTLIELGGKTWRFVDTAGLRRKVGQASGH 271

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           E     RT   +E A++ ++L + +            +        +    K DL     
Sbjct: 272 EYYASLRTHGAIEAAEVAIVLLDASQPITEQDQRVLSMVIESGRALVLAFNKWDLVDEDR 331

Query: 337 EEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            +                    IS+ +G  +++L+  ++S L +  K++   
Sbjct: 332 RDLLEREVDLQLAQLNWAQRVNISAKSGRAVQKLVPALESALDSWDKRISTG 383



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 17/163 (10%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  N GKS+L N +  +  A+V DIPG TRD ++   +       + DT G       ++
Sbjct: 37  GRPNVGKSTLVNRIIGRREAVVQDIPGVTRDRVSYPAEWLDRRFTVQDTGGWEADATGLQ 96

Query: 286 KEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTE 337
           +   ++    +  ADLI+L+ +             ++             K D      +
Sbjct: 97  QLVAEQARHAMATADLIILVVDATVGATSTDEEAAKLLRRSGKPVFLAANKVDSDRAEAD 156

Query: 338 EYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                         IS+  G G+ +L++++ + L     +   
Sbjct: 157 AAVLWSLGLGEPMPISAMHGRGVADLLDRVVADLPEISARGSG 199


>gi|316933671|ref|YP_004108653.1| ribosome-associated GTPase EngA [Rhodopseudomonas palustris DX-1]
 gi|315601385|gb|ADU43920.1| ribosome-associated GTPase EngA [Rhodopseudomonas palustris DX-1]
          Length = 458

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 80/192 (41%), Gaps = 29/192 (15%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I     ++ I+G  NAGKS+  N L  ++  + +   GTTRD + +++  +G   ++ DT
Sbjct: 182 IATRPIRVAIVGRPNAGKSTFINRLLGEERLLTSPEAGTTRDSIAVEVQWKGREFRVFDT 241

Query: 275 AGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------FI 323
           AG+R    I    EK  +      V  A++++L+ +  ++ E    +  D         +
Sbjct: 242 AGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRFEEQDLRIADLVEREGRALV 301

Query: 324 FIGTKSDL-------YSTYTEEYDHLISSFT-----------GEGLEELINKIKSILSNK 365
               K DL        +    + DH +               GEG++ L+  ++   +  
Sbjct: 302 IAVNKWDLMERQGGQIAQLRADADHWLPQIKGVPIVATSGMLGEGVDRLMQAVQDAYAVW 361

Query: 366 FKKLPFSIPSHK 377
            +++P +  +  
Sbjct: 362 NRRVPTAALNRW 373



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  + +A+V D PG TRD    +  L      + DTAG+ E
Sbjct: 3   FTLAIIGRPNVGKSTLFNRLVGQKLALVDDAPGVTRDRREGEGRLGDLTFTLIDTAGLDE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                      ++T   +E+AD +L + +  +          + +   N   + +  KS+
Sbjct: 63  GPKGSLTARMQEQTETAIEHADALLFVIDARAGLTPNDRAFADFARRANKPVVLVANKSE 122

Query: 331 ---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                                IS+  GEGL EL + ++ ++ 
Sbjct: 123 GKHGEIGAMESYALGLGDPVQISAEHGEGLGELYDALRPLMP 164


>gi|122700859|emb|CAL88018.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   + S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSVPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|292806546|gb|ADE42403.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|168703924|ref|ZP_02736201.1| probable GTP-binding protein [Gemmata obscuriglobus UQM 2246]
          Length = 495

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 11/126 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  NAGKS+  N+LA  +  IV++IPGTTRD + + ++ +G      DTAG+R+
Sbjct: 178 LMLAIVGRRNAGKSTFINSLAGGERVIVSEIPGTTRDSVDVRIERDGKSYVAIDTAGVRK 237

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
           T  +   +E     R    V  AD+++   +   +         E    +N   IF+  K
Sbjct: 238 TAKMGTNIEFYSNHRAQRSVRRADVVMHFFDARHRVSRVDKQLAEYVVEENKPAIFVVNK 297

Query: 329 SDLYST 334
            DL   
Sbjct: 298 WDLVKE 303



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 18/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSLFN LA + ++IV    G TRD ++  ++  G +  + DT GI   D
Sbjct: 6   VAIVGRPNVGKSSLFNWLAGRRISIVDPTAGVTRDRVSTVVEHGGRVWDLMDTGGIGIVD 65

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLY 332
                  ++R     +E+A +++ + ++        ++++      N   + +  K+D  
Sbjct: 66  VDDLTADVERQIQFAIESAAVVVFMVDVREGVVPLDEDVAARLRAINKPVVLVANKADTA 125

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKL 369
               +  +           +S+    G +EL   I + L     ++
Sbjct: 126 KLGEQAGEFNRLGYGEPLCVSADQKLGKDELFEAILAQLPPDTGEV 171


>gi|122702743|emb|CAL88561.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVL 166


>gi|122702221|emb|CAL88301.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERVYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|103487684|ref|YP_617245.1| GTP-binding protein EngA [Sphingopyxis alaskensis RB2256]
 gi|98977761|gb|ABF53912.1| Small GTP-binding protein domain [Sphingopyxis alaskensis RB2256]
          Length = 456

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G   +I DTAG  + D
Sbjct: 7   IAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRREGDGKLLGLEFRIVDTAGFEDQD 66

Query: 282 DIVE-KEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD-- 330
                     +T   V  AD  L L +  +      +EI+     ++   I    K++  
Sbjct: 67  AATLPGRMRAQTEKAVREADAALFLIDARAGVTPLDEEIARWLRSEDTPVILCANKAEGK 126

Query: 331 -----LYSTYTEEYD--HLISSFTGEGLEELINKIKSIL 362
                L   Y+  ++    +S+  GEGL +L + ++ I+
Sbjct: 127 QGEAGLMEAYSLGFETVFALSAEHGEGLVDLFDALRPIV 165



 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 15/129 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG----YLVKISDTA 275
            K+ I+G  NAGKS+L N +  +D  I     G TRD + +D   E     + +++ DTA
Sbjct: 187 MKLAIVGRPNAGKSTLINRMIGEDRLITGPEAGITRDSIRVDWRWEKDGEVHEIQLFDTA 246

Query: 276 GIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIF 324
           G+R+     D +EK  +      V+ A++++LL +     E            +    I 
Sbjct: 247 GMRKRAKVQDKLEKLSVADALHAVDFAEVVVLLLDATKGLEAQDLRIADRVLQEGRALIV 306

Query: 325 IGTKSDLYS 333
              K D+  
Sbjct: 307 ALNKWDIAE 315


>gi|164686279|ref|ZP_02210309.1| hypothetical protein CLOBAR_02717 [Clostridium bartlettii DSM
           16795]
 gi|164601881|gb|EDQ95346.1| hypothetical protein CLOBAR_02717 [Clostridium bartlettii DSM
           16795]
          Length = 296

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D P TTR+ +      E   +   DT GI +  
Sbjct: 7   VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDEECQIVFLDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPK--NIDFIFIGTKSD--- 330
           + + +  +K      +N DL+L + + +       +K I   +      I +  K D   
Sbjct: 67  NKLGEFMVKSATDAFKNVDLVLFVVDDSKKIGPGDRKIIEDLRGIKTPVILVLNKIDKLE 126

Query: 331 ------LYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 L   Y+ E        IS+  G  + EL+  I + L    K  P  + + +   
Sbjct: 127 ESELFELMQLYSNEDLFKAIVPISALKGRNVNELLKVIGNYLQEGPKYFPDYMITDQPER 186

Query: 381 YHLSQTVR 388
             +S+ +R
Sbjct: 187 VLVSELIR 194


>gi|296117980|ref|ZP_06836563.1| ribosome-associated GTPase EngA [Corynebacterium ammoniagenes DSM
           20306]
 gi|295969211|gb|EFG82453.1| ribosome-associated GTPase EngA [Corynebacterium ammoniagenes DSM
           20306]
          Length = 539

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 72/176 (40%), Gaps = 17/176 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N    +  A+V D PG TRD ++   D  G    + DT G     
Sbjct: 106 VAIVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRISYIGDWNGQRFFVQDTGGWDPNA 165

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
             +     ++  + +E AD+I+ + +    I     +   K    ++  I +  K D  S
Sbjct: 166 KGIHGAIARQAEVAMETADVIVFVVDTKVGITETDSVMARKLQRSDVPVILVANKFDSDS 225

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            Y +  +           +S+  G G  ++++++  +   + +    +    +  L
Sbjct: 226 MYADMAEFYALGLGDPWPVSAQHGRGGADVLDEVLKLFPEQPRHSSITAGPRRVAL 281



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 82/221 (37%), Gaps = 28/221 (12%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
               S +       + +++     +      I  G + + ++G  N GKSSL N +  ++
Sbjct: 241 PWPVSAQHGRGGADVLDEVLKLFPEQPRHSSITAGPRRVALVGKPNVGKSSLLNKITGQE 300

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENAD 300
            ++V ++ GTT D +   + L+  L +  DTAG+R+        E     RT   ++ A+
Sbjct: 301 RSVVDNVSGTTVDPVDSLVQLDKQLWRFVDTAGLRKKVKNAQGHEYYASLRTRGVIDAAE 360

Query: 301 LILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST-----YTEEYD------- 340
           + ++L + + +          +        +    K DL           E D       
Sbjct: 361 VCVMLIDASQEISEQDQRVLNMVLEAGKALVIAFNKWDLMDEDRRYYLDREIDQQLAHLP 420

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                 IS+ TG  L+ L   +   L    K++     ++ 
Sbjct: 421 WVTRINISAETGRSLQRLEPAMIEALEGWDKRVTTGQLNNW 461


>gi|160886572|ref|ZP_02067575.1| hypothetical protein BACOVA_04583 [Bacteroides ovatus ATCC 8483]
 gi|156108457|gb|EDO10202.1| hypothetical protein BACOVA_04583 [Bacteroides ovatus ATCC 8483]
          Length = 396

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 18/170 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  N+GKSSL NAL  +D A+V+D PGTT D+++  ++++G       DT G  
Sbjct: 12  LHIALFGRRNSGKSSLINALTGQDTALVSDTPGTTTDLVSKAMEIQGIGPCLFIDTPGFD 71

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKE---ISFPKNIDFIFIGTKSDLY 332
           +  ++ E   I RT   +E  D+ LLL      + +KE   +   KNI  I +  K D+ 
Sbjct: 72  DEGELGELR-ISRTLKAIEKTDIALLLCGDTTFSHEKEMLTLLKEKNIPVIPVLNKIDIR 130

Query: 333 ST-------YTEEYDHLI---SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                      EEY       S+    G+E++   I   L + F +   +
Sbjct: 131 ENSDSLATYIEEEYKIRPLLISAKEKTGIEQIRQAILEKLPSDFGQQSIT 180


>gi|122701465|emb|CAL88122.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNCLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|317453537|emb|CBL87878.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|29833066|ref|NP_827700.1| GTP-binding protein EngA [Streptomyces avermitilis MA-4680]
 gi|37999529|sp|Q828Y7|DER_STRAW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|29610188|dbj|BAC74235.1| putative GTP-binding protein [Streptomyces avermitilis MA-4680]
          Length = 491

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 89/237 (37%), Gaps = 23/237 (9%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
           HI+    A+ +     D +     E+  +  F   D+   I +   G +      + ++G
Sbjct: 4   HIQPEGSAEHEHGALGDAEYAEFMELAAEEGFDIEDVEGAIDEAGHGPL----PVLAVVG 59

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G  +    ++ 
Sbjct: 60  RPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDVLGIDA 119

Query: 287 EGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD-------- 330
               +    +E AD ++ + +          +   +        +    K D        
Sbjct: 120 SVAAQAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGQSGEADA 179

Query: 331 --LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             L++    E  H +S+  G G  ++++ +   L     +   +     R +  + +
Sbjct: 180 SYLWALGLGE-PHPVSALHGRGTGDMLDAVLEALPEAPAQSFGAAIGGPRRIALIGR 235



 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 102/282 (36%), Gaps = 33/282 (11%)

Query: 123 IDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
             +  A+++  ++ ++     T+      +      +     +   +     +     L 
Sbjct: 127 YAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGQSGEADASYLWALG 186

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             E   V     +   + +  +   +    +Q   G  I    +I ++G  N GKSSL N
Sbjct: 187 LGEPHPVSALHGRGTGDMLDAVLEALPEAPAQS-FGAAIGGPRRIALIGRPNVGKSSLLN 245

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFL 294
            +A +D  +V +I GTTRD +   ++L G   K  DTAGIR+   + +        RT  
Sbjct: 246 KVAGEDRVVVNEIAGTTRDPVDELIELGGVTWKFVDTAGIRKRVHLQQGADYYASLRTAA 305

Query: 295 EVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTE--------- 337
            VE A++ ++L + +    +   +            +    K D                
Sbjct: 306 AVEKAEVAVILIDASESISVQDQRIVTMAVDAGRAIVLAFNKWDTLDEERRYYLEREIET 365

Query: 338 -------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                       +S+ TG  +E+L+  I++ L     ++P  
Sbjct: 366 ELLQVAWAPRVNVSARTGRHMEKLVPAIETALDGWETRVPTG 407


>gi|146328838|ref|YP_001209431.1| GTP-binding family protein [Dichelobacter nodosus VCS1703A]
 gi|146232308|gb|ABQ13286.1| GTP-binding family protein [Dichelobacter nodosus VCS1703A]
          Length = 449

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 32/205 (15%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEI----IRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
            E    I  L++ I S +    +        +    + +LG  NAGKS+L N L  ++  
Sbjct: 149 AEQRRGIKQLEDLIVSLLPPAPIENANETAAQESIHLAVLGRPNAGKSTLLNRLLGEERL 208

Query: 246 IVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADL 301
           + + + GTTRD + I  +D EG    + DTAGIR     DD +EK  I +    +E A++
Sbjct: 209 VASPVAGTTRDAIRIPYVDNEGDAFTLIDTAGIRRKARVDDKIEKFSIVKALEAIEQANV 268

Query: 302 ILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY-------------- 339
           ++L+ +  +               +    +    K D     T E               
Sbjct: 269 VILVLDAQAGITDQDAHLLGEIIKRGRGLVIAVNKWDHLDGETREKIQAQLERKLNFVDY 328

Query: 340 --DHLISSFTGEGLEELINKIKSIL 362
                IS+  G  +  L+  +K++ 
Sbjct: 329 AEIFYISALHGSNIRALLPAVKTVY 353



 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 19/183 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L +   AIV++  G TRD +     L G    + DT G+  T+
Sbjct: 8   VALVGRPNVGKSTLFNTLTRSRQAIVSNKAGLTRDRIYARTTLAGVPCMLIDTGGMLNTE 67

Query: 282 DIVEKEGI-KRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLY 332
                  + ++    +E AD+I+ + +      +   +            +    K D  
Sbjct: 68  TAEIDFRVDEQARTAMEEADVIVFVLDARDGLTLDDEQIAAELRRVTKPIVLAVNKIDGV 127

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYH 382
                  D            ++    G+++L + I S+L     +    +      HL  
Sbjct: 128 DPDVAVADFYRLGMQPVLTIAAEQRRGIKQLEDLIVSLLPPAPIENANETAAQESIHLAV 187

Query: 383 LSQ 385
           L +
Sbjct: 188 LGR 190


>gi|114569754|ref|YP_756434.1| small GTP-binding protein [Maricaulis maris MCS10]
 gi|114340216|gb|ABI65496.1| small GTP-binding protein [Maricaulis maris MCS10]
          Length = 490

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 18/160 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS+LFN LA K +AIV D PG TRD       L    + + DTAG  ++
Sbjct: 7   RIAVVGRPNVGKSTLFNRLAGKPLAIVDDRPGVTRDRREARGRLGDLPLLLIDTAGYDDS 66

Query: 281 D-DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL 331
           + D ++ E   +T + + +ADL LLL +  +          ++        + +  K + 
Sbjct: 67  EKDGLDAEMRTQTEMAIHDADLCLLLIDARAGVTPLDVVFADVIRRSGKPVLLLANKCEG 126

Query: 332 YSTYTEEYD---------HLISSFTGEGLEELINKIKSIL 362
            +  +   D            S+  G G+ +L + +   L
Sbjct: 127 KAGESGLIDAFELGMGEPIAFSAAHGAGIGDLYDAVVHTL 166



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 11/126 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I ++G  NAGKS+L N L  ++  I     G TRD +++D   +G  V++ DTAG+R+
Sbjct: 185 LRIAVIGRPNAGKSTLINTLIGEERLITGPEAGITRDAISVDWVWDGRRVRLHDTAGLRK 244

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
                D +E+     T   V+ A+++LLL +     E        +++ +        +K
Sbjct: 245 RGKVADRLERMSAADTLRAVKFAEVVLLLMDAEHPLEKQDLHLADMAYKEGRAVAIAVSK 304

Query: 329 SDLYST 334
            DL   
Sbjct: 305 MDLVPN 310


>gi|256545124|ref|ZP_05472490.1| ribosome-associated GTPase EngA [Anaerococcus vaginalis ATCC 51170]
 gi|256399165|gb|EEU12776.1| ribosome-associated GTPase EngA [Anaerococcus vaginalis ATCC 51170]
          Length = 442

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 90/227 (39%), Gaps = 30/227 (13%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           +    D    +S E   ++  L + I S I   K    + +  +I I+G  NAGKSSL N
Sbjct: 139 YQFGFDDLISTSAEGSKNLGDLLDKIVSFIDFSKFDTDL-DATRIAIIGKPNAGKSSLVN 197

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFL 294
            L  ++  IVTDI GTTRD +      +     + DTAG+R      D +E    +RTF 
Sbjct: 198 HLLNEERMIVTDIAGTTRDAIDTYWQYKDNNYVLIDTAGLRRKNKVSDNIEYYANQRTFD 257

Query: 295 EVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTYTE--------- 337
            V+++++ L L +               +  +    I    K D     T          
Sbjct: 258 AVDSSEICLFLIDATVGVTEQDTKIAGYAHNQKKAIIIAVNKWDKVEKETNTMKNMEKEI 317

Query: 338 ---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                         IS   G+ + +L+N I+ + SN   ++   + +
Sbjct: 318 RNKLSFALYAPIIFISVLKGQRITDLLNLIEIVNSNYHTRIKTGVLN 364



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 18/167 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E I N   + ++G +N GKS+LFN L  K  AI  D+ G TRD +   ++  G+   ++D
Sbjct: 2   ENIMNAPIVTLVGRTNVGKSTLFNKLVGKRKAITEDVNGVTRDRVYDKVEWIGHEFILAD 61

Query: 274 TAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIF 324
           T G+     +++ +E   +    +  +DLIL + +             +     N   I 
Sbjct: 62  TGGLDISNKELMNQEIKSQVEKALLESDLILFVVDGREGINPHDYEIADEIRKYNKKVIV 121

Query: 325 IGTKSDLYSTYTEEYDHLISSFTG---------EGLEELINKIKSIL 362
           +  K D  +     YD     F           + L +L++KI S +
Sbjct: 122 VANKIDGANIPDHIYDFYQFGFDDLISTSAEGSKNLGDLLDKIVSFI 168


>gi|209885506|ref|YP_002289363.1| small GTP-binding protein domain [Oligotropha carboxidovorans OM5]
 gi|209873702|gb|ACI93498.1| small GTP-binding protein domain [Oligotropha carboxidovorans OM5]
          Length = 469

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 34/199 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ +LG  NAGKS+L N L  ++  + +   GTTRD + +D++ +G  +++ DTAG+R 
Sbjct: 198 IRVAVLGRPNAGKSTLINYLLGEERLLTSPEAGTTRDSIAVDVEWKGRKLRVFDTAGLRR 257

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
               DD +EK  +      V  A++++L+ +  ++ E    +            +    K
Sbjct: 258 RSRIDDKLEKLSVSDALRAVRFAEVVVLVMDAQNRFEEQDLRLADLVEREGRAIVLAVNK 317

Query: 329 SDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL                             +S   GEG++ LI  I+       K++ 
Sbjct: 318 WDLIERTPGAIGALRESADRLLPQLRGAPLVAVSGLMGEGIDRLIAAIEMAHGTWNKRVS 377

Query: 371 FSIPSHKRHLYHLSQTVRY 389
            S  +         Q VR 
Sbjct: 378 TSALNRWF-----EQAVRA 391



 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I I+G  N GKS+LFN L  + +A+V D PG TRD       L      I DTAG+  
Sbjct: 13  FTIAIIGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRREGQGRLGDLDFTIIDTAGLDS 72

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                      ++T   +  AD ++ + +  +          + +   N   + +  KS+
Sbjct: 73  GPRGSLTARMQEQTEAAIAAADALMFVIDARAGLTPNDRAFADFARRANKPVLLLANKSE 132

Query: 331 -------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFK 367
                  +  +Y         IS+  GEGL +L + +K ++     
Sbjct: 133 GRHGEVGIAESYALGLGDPIGISAEHGEGLGDLYDALKDLMPEPIH 178


>gi|169797239|ref|YP_001715032.1| GTP-binding protein EngA [Acinetobacter baumannii AYE]
 gi|184156836|ref|YP_001845175.1| GTP-binding protein EngA [Acinetobacter baumannii ACICU]
 gi|215484680|ref|YP_002326915.1| small GTP-binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|260556121|ref|ZP_05828340.1| ribosome-associated GTPase EngA [Acinetobacter baumannii ATCC
           19606]
 gi|301509976|ref|ZP_07235213.1| GTP-binding protein EngA [Acinetobacter baumannii AB058]
 gi|332851256|ref|ZP_08433329.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013150]
 gi|332866125|ref|ZP_08436840.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013113]
 gi|332873250|ref|ZP_08441207.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6014059]
 gi|254783127|sp|B7H065|DER_ACIB3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783129|sp|B2I3F0|DER_ACIBC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783131|sp|B0V4V6|DER_ACIBY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783285|sp|A3M215|DER_ACIBT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169150166|emb|CAM88060.1| putative GTP-binding protein EngA [Acinetobacter baumannii AYE]
 gi|183208430|gb|ACC55828.1| predicted GTPase [Acinetobacter baumannii ACICU]
 gi|193076314|gb|ABO10959.2| putative GTP-binding protein EngA [Acinetobacter baumannii ATCC
           17978]
 gi|213986103|gb|ACJ56402.1| small GTP-binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|260410176|gb|EEX03475.1| ribosome-associated GTPase EngA [Acinetobacter baumannii ATCC
           19606]
 gi|322506727|gb|ADX02181.1| engA [Acinetobacter baumannii 1656-2]
 gi|323516601|gb|ADX90982.1| GTP-binding protein EngA [Acinetobacter baumannii TCDC-AB0715]
 gi|332730136|gb|EGJ61463.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013150]
 gi|332734766|gb|EGJ65860.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013113]
 gi|332738762|gb|EGJ69632.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6014059]
          Length = 469

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 112/278 (40%), Gaps = 38/278 (13%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 73  EQSKTAINEADIIIFVVDARAGLLASDEQIARELRTL-GKKIYLVANKVDGVHAEAALVE 131

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAG 231
              L   E   V     + V   +  +  DI          E  ++ G ++ I+G  N G
Sbjct: 132 FYKLGMGEPLQVAASHGRGVQQMLEDVLQDIP---EDENPEEHDKDTGLRLAIIGRPNVG 188

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KS+L N L  +D  +  D PGTTRD + I  + EG    + DTAG+R     D+++EK  
Sbjct: 189 KSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVRRKGKVDEMIEKFS 248

Query: 289 IKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEE-- 338
           I +T   +++A +++++ +      ++++     +       +    K D  S Y  +  
Sbjct: 249 IVKTLQAMKDAHVVVVVVDAREGIVEQDLHLIGYALEAGRAMVIAINKWDNMSEYDRKQC 308

Query: 339 --------------YDHLISSFTGEGLEELINKIKSIL 362
                           HLIS+  G G+ EL   I    
Sbjct: 309 KLDVERRFDFIPWARIHLISALHGTGVGELYPSIHRAY 346



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E++
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGESE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
             ++    +++   +  AD+I+ + +  +    S  +              +  K D
Sbjct: 65  GGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVD 121


>gi|122701723|emb|CAL88250.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       +S     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNVSVSHNRGISTLIDAILSALN 167


>gi|84684686|ref|ZP_01012586.1| GTP-binding protein EngA [Maritimibacter alkaliphilus HTCC2654]
 gi|84667021|gb|EAQ13491.1| GTP-binding protein EngA [Rhodobacterales bacterium HTCC2654]
          Length = 481

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 18/169 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V + PG TRD+   +  L      + DTAG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDNQPGVTRDLREGEARLGEMRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD +E    + T   VE AD  L L +  +          +I   KN   I    K++
Sbjct: 63  ATDDSLEGRMRRLTERAVEMADACLFLIDARAGVLPTDEIFADILRKKNAHVILAANKAE 122

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLP 370
             +      +            S+  GEG+ +L   +  +      +  
Sbjct: 123 GKAGEAGMIEAWGLGLGEPIALSAEHGEGMGDLAAALAPVAEEMASRPS 171



 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 77/182 (42%), Gaps = 29/182 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N L  ++  +     G TRD +++  D +G   +I DTAG+R+
Sbjct: 194 LQVAVIGRPNAGKSTLINRLIGEERLLTGPEAGITRDSISLAFDWDGTPTRIFDTAGMRK 253

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      V+ A+++++L +     E        ++  +    +    K
Sbjct: 254 KAKVQEKLEKLSVADGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVVVAVNK 313

Query: 329 SDLYSTYTEEYDH------------------LISSFTGEGLEELINKIKSILSNKFKKLP 370
            D+ +   ++  H                   IS+ TG G++ L   +        +++P
Sbjct: 314 WDVEAEKQQKLKHLRDGFEKLLPQLRGAPLVTISAKTGRGMDRLHAAVMRAHEVWNRRIP 373

Query: 371 FS 372
            +
Sbjct: 374 TA 375


>gi|323138582|ref|ZP_08073650.1| ribosome-associated GTPase EngA [Methylocystis sp. ATCC 49242]
 gi|322396216|gb|EFX98749.1| ribosome-associated GTPase EngA [Methylocystis sp. ATCC 49242]
          Length = 466

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L      I DTAG+ E
Sbjct: 3   FSLAIIGRPNVGKSTLFNRLTGKKLALVDDRPGVTRDRREGEARLADLRFTIIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                +E     +T   + +AD IL + +             ++        I I  K++
Sbjct: 63  GASATLEGRMRAQTENAILSADAILFVIDARVGVTPEDKYFADLVRRAGKPVILIANKAE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSIL 362
             +      +           +S+  GEG+  L + ++  L
Sbjct: 123 GKAGEAGALEGFALGLGDPVPLSAEHGEGMSNLYDALREAL 163



 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 75/358 (20%), Positives = 127/358 (35%), Gaps = 68/358 (18%)

Query: 40  KKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL 99
           +++   R A LR F  +D   L++G         S T E          I   + IL  +
Sbjct: 40  RREGEARLADLR-FTIIDTAGLEEG--------ASATLEGRMRAQTENAILSADAILFVI 90

Query: 100 AKMPNLRLANP--GEFSRRAFENGKIDLLEAESLADLISSETEMQRRL------SMEGMS 151
                +   +    +  RRA +   +   +AE  A    +       L      S E   
Sbjct: 91  DARVGVTPEDKYFADLVRRAGKPVILIANKAEGKAGEAGALEGFALGLGDPVPLSAEHGE 150

Query: 152 GELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK 211
           G +S+LY    + L    +  E +    EE    +      L+    L            
Sbjct: 151 G-MSNLYDALREALPEETAEPEEEEADKEENLYDDEEDGSDLDVTKPL------------ 197

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
                    +I ++G  NAGKS+L N +  +D  +     G TRD + +D       +K+
Sbjct: 198 ---------RIAVVGRPNAGKSTLINRILGEDRLLTGPEAGITRDSIGVDFVWRDRKMKL 248

Query: 272 SDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNI 320
            DTAG+R+     D +EK         V  +++++LL +     E        ++  +  
Sbjct: 249 FDTAGLRKRAKVVDKLEKLSAADALRAVRFSEVVVLLIDSTIPFEKQDLTIADLAAREGR 308

Query: 321 DFIFIGTKSDLY-------STYTEEYD-----------HLISSFTGEGLEELINKIKS 360
            F+    K DL        S   EE +             +S  TG+GL+ L+  I +
Sbjct: 309 AFVIALGKWDLIEDRGAKLSLLREEAERLLPQVRGCPVVPVSGATGQGLDRLMEAIVA 366


>gi|317453513|emb|CBL87866.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVLHNRGISALIDAILNALN 167


>gi|254393241|ref|ZP_05008394.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064]
 gi|294811807|ref|ZP_06770450.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064]
 gi|197706881|gb|EDY52693.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064]
 gi|294324406|gb|EFG06049.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064]
          Length = 490

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 82/226 (36%), Gaps = 21/226 (9%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D     D +     E+  +  F    +   I +   G +      + ++G  N GKS+L 
Sbjct: 14  DHGALGDAEYAEFMELAAEEGFDLEAVEEAIDEAGHGPL----PVLAVVGRPNVGKSTLV 69

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N +  +  A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +
Sbjct: 70  NRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDVLGIDASVAAQAEYAI 129

Query: 297 ENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------- 339
           E AD ++ + + +        +   +        +    K D  S   +           
Sbjct: 130 EAADAVVFVVDASVGATDTDEAVVRLLRRAGKPVVLCANKVDGPSGEADAAALWSLGLGE 189

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
            H +S+  G G  ++++ +   L     +   +     R +  + +
Sbjct: 190 PHPVSALHGRGTGDMLDAVLEALPEAPAQSFGTAVGGPRRIALIGR 235



 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N +A+++  +V ++ GTTRD +   ++L G   K  DTAGIR  
Sbjct: 229 RIALIGRPNVGKSSLLNKVAREERVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRRR 288

Query: 281 DDIVE---KEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKS 329
             + E        RT   VE A++ ++L + +    +        +       +    K 
Sbjct: 289 VHLQEGADYYASLRTAAAVEKAEVAVVLIDASENISVQDQRIVTMAVEAGRAMVIAFNKW 348

Query: 330 D---------LYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D         L      E           +S+ TG  +E+L+  I++ L+    ++P  
Sbjct: 349 DTLDEERRYYLEREIETELGQIAWAPRVNVSARTGRHMEKLVPAIETALAGWETRVPTG 407


>gi|122702513|emb|CAL88447.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L ++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLVRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|144574977|gb|AAZ43562.2| GTP-binding protein EngA [Mycoplasma synoviae 53]
          Length = 435

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 14/166 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  + ++IV D PG TRD L   +      +KI DT GI   +
Sbjct: 5   IAIIGKPNVGKSTLFNRLNGRKISIVDDTPGVTRDRLYEVISWLNKEIKIIDTGGIEIKN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD- 340
              +++   +  + +E AD+I  + + +S+        ++ +    K+ L      E + 
Sbjct: 65  APFQEQIQIQAKIAIEEADVIFFVFDGHSEISNDDLFIMNILRKANKTVLALANKLEGNK 124

Query: 341 -------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                          IS+  GEGL E +++    L  + K L  + 
Sbjct: 125 DFDYSWYKLGVDIFPISALHGEGLGEALDEACKHLFFEEKNLENNF 170



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 104/267 (38%), Gaps = 38/267 (14%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEE-----EDVQNFSSKEVLNDILFLKNDISSHIS 208
           + ++  +    +  + + +E + DF         D+   S+         L         
Sbjct: 102 IMNILRKANKTVLALANKLEGNKDFDYSWYKLGVDIFPISALHGEGLGEALDEACKHLFF 161

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           + K    + N +K+ I+G  NAGKSSL N L  +  +IV++IPGTTRD +   L ++   
Sbjct: 162 EEKN---LENNFKLSIIGKPNAGKSSLLNKLTNEYRSIVSEIPGTTRDSVKSFLKIKDQN 218

Query: 269 VKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINSKK---------EISF 316
            +I DTAGI     +VE      + R    +  +DL L++ +    +           + 
Sbjct: 219 FEIIDTAGIMRKSKLVESVDHYALMRAMSSLVESDLTLVVIDATIDELSHFDSRIIGYAL 278

Query: 317 PKNIDFIFIGTKSDLYSTYTEE------------------YDHLISSFTGEGLEELINKI 358
             N   + +  K DL                             IS+ +G  +++LI+ I
Sbjct: 279 EHNKPIVIVINKWDLVEKNQNTMMQYEKKLREKMKFSSWMPVVFISAKSGSRIDKLIDTI 338

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             +  N  +++  ++ ++      L Q
Sbjct: 339 LQVRENLNREIKPNLLANLILEAQLIQ 365


>gi|296273309|ref|YP_003655940.1| ribosome-associated GTPase EngA [Arcobacter nitrofigilis DSM 7299]
 gi|296097483|gb|ADG93433.1| ribosome-associated GTPase EngA [Arcobacter nitrofigilis DSM 7299]
          Length = 480

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 25/195 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  K+ I+G  N GKSS+ NAL  ++ ++V+ I GTT D +    + +   +   DTAG+
Sbjct: 213 NNIKVAIIGRVNVGKSSILNALIGQERSVVSPIAGTTIDPVDESFEYKDKNITFVDTAGL 272

Query: 278 RETD--DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGT 327
           R     + +EK  + RT   +E A+L L++ + +S+      K         +  I +  
Sbjct: 273 RRRGSIEGIEKFALMRTKEMLEKANLALVVLDASSELVDLDEKIAGLVDEYGLGTIIVLN 332

Query: 328 KSD--------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           K D        +  T   ++  L        S+ TG  +++L +K+  I  N  +++  S
Sbjct: 333 KWDENMDTFQKIQETIRSKFKFLYYAPIIAVSAKTGRSIDKLKDKLIEIYENYSQRVSTS 392

Query: 373 IPSHKRHLYHLSQTV 387
             +       +   +
Sbjct: 393 ELNRIIEHALIRHAL 407



 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 19/163 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSLFN +AK+ +AIV+D  GTTRDV   ++++      + DT GI ET
Sbjct: 12  KIALVGQPNVGKSSLFNRIAKQRIAIVSDQAGTTRDVRKHEVEIFDKKALMLDTGGIDET 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF---PKNIDFIFIGTKSDLY 332
           +D +     ++     + AD+IL + +      +  KE+ +           +  K D  
Sbjct: 72  NDAIFSTVKRKAVETAKEADIILFMVDGKKLPDDKDKELFYELQALGKKLALVVNKIDND 131

Query: 333 ST-----------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                          +E    IS     G ++L + I ++L  
Sbjct: 132 KEKERLWEFFEFGIKDENLFGISVSHNRGTKDLFDWIYNVLPE 174


>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254547822|gb|ACT56895.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 470

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 83/179 (46%), Gaps = 22/179 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y I I+G  N GKS+LFN L KK +A+V + PG TRD L     + G +  I DTAGI +
Sbjct: 3   YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62

Query: 280 TDDI-VEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTK 328
             +  + K+   +T L +  A LIL L  I+SK  I+            KNI  I +  K
Sbjct: 63  GKNCSIAKQMNDQTELAINEAHLILFL--IDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120

Query: 329 SD-------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
            D        Y  Y+ ++     IS+    G  EL + I  I   K+   P  +  + +
Sbjct: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179



 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 79/201 (39%), Gaps = 29/201 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           + I    +I ++G  N GKS+L N L   +  +     G TRD ++I  + + + ++I D
Sbjct: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257

Query: 274 TAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDF 322
           TAG+R+   I    E++ +K++   V   +  ++L +     E    +            
Sbjct: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317

Query: 323 IFIGTKSDLYS------------------TYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           +    K D+ S                     + Y + IS  TGEGL++L+  +  I   
Sbjct: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377

Query: 365 KFKKLPFSIPSHKRHLYHLSQ 385
              ++  S  +       L  
Sbjct: 378 WKTRITTSYLNSWLQKTQLQN 398


>gi|254476934|ref|ZP_05090320.1| small GTP-binding protein domain [Ruegeria sp. R11]
 gi|214031177|gb|EEB72012.1| small GTP-binding protein domain [Ruegeria sp. R11]
          Length = 488

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 9/120 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVVDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ +E    + T   V+ AD+ L + +             +I   K+   I    KS+
Sbjct: 63  ATDNSLEGRMRRLTERAVDMADVCLFMIDARVGVTPTDEVFADILRKKSAHVILAANKSE 122



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 78/187 (41%), Gaps = 29/187 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D +G  +++ DTAG+R+
Sbjct: 202 LQVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQIDWQGVPMRVFDTAGMRK 261

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      V+ A+++++L + +   E        ++  +    +    K
Sbjct: 262 KAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDASIPFEQQDLRIADLAEREGRAVVVAVNK 321

Query: 329 SD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D                  L           +S+ TG+GL+ L   I        +++P
Sbjct: 322 WDAEENKQEKLRDLKEAFGRLLPQLRGAPLVTVSAKTGKGLDRLHAAIMRAYEIWNRRVP 381

Query: 371 FSIPSHK 377
            +  +  
Sbjct: 382 TAALNRW 388


>gi|122700845|emb|CAL88011.1| GTPase [Helicobacter pylori]
 gi|122700855|emb|CAL88016.1| GTPase [Helicobacter pylori]
 gi|122702531|emb|CAL88455.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|315586500|gb|ADU40881.1| ribosome-associated GTPase EngA [Helicobacter pylori 35A]
          Length = 461

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 25/180 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKSD 330
             I  +EK  ++RT   +E + + LL+ ++++      ++IS   +      I I  K D
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +     EE                    S      ++E+ +KI  +     K++P S+ +
Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKTRHIDEIKHKIIEVYECFSKRIPTSLLN 380



 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 129

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 130 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 168


>gi|217032525|ref|ZP_03438016.1| hypothetical protein HPB128_180g24 [Helicobacter pylori B128]
 gi|298736539|ref|YP_003729065.1| GTP-binding protein [Helicobacter pylori B8]
 gi|216945803|gb|EEC24426.1| hypothetical protein HPB128_180g24 [Helicobacter pylori B128]
 gi|298355729|emb|CBI66601.1| GTP-binding protein [Helicobacter pylori B8]
          Length = 461

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 25/180 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKSD 330
             I  +EK  ++RT   +E + + LL+ ++++      ++IS   +      I I  K D
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +     EE                    S      ++E+ +KI  +     K++P S+ +
Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSLLN 380



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 28/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L++ 
Sbjct: 128 DKEKERAYAFSSF-----------------GIPKSFNISVSHNRGISALIDAVLSALDLN 170

Query: 394 SLNEKDCGLDII 405
            + E+D   DI+
Sbjct: 171 KIIEQDLDADIL 182


>gi|122700889|emb|CAL88033.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|242255824|gb|ACS88896.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|237785456|ref|YP_002906161.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758368|gb|ACR17618.1| cytidylate kinase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 784

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 81/218 (37%), Gaps = 28/218 (12%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAK 241
           D     S +  +    + +++          E I +G + + ++G  N GKSSL N +  
Sbjct: 485 DNPYPVSAKHGHGAADVLDEVIRLFPDKPRQESITSGPRRVALVGKPNVGKSSLLNKMTG 544

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVEN 298
           +D A+V D+ GTT D +   ++L+       DTAGIR+        E     RT   ++ 
Sbjct: 545 EDRAVVDDVAGTTVDPVDSLVELDQKTWTFVDTAGIRKKTKKATGHEYYAGLRTRGAIDA 604

Query: 299 ADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEE------------ 338
           A++++ + + +            +        +    K D+      +            
Sbjct: 605 AEVVVFIVDASEPVTEQDQRVLRMILDSGRALVVAYNKWDMVDEDRRDMLDREIELQLSH 664

Query: 339 ----YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   IS+ TG  + +L   +   L +   ++P  
Sbjct: 665 IPWARRVNISAKTGRAIHKLEPAMIEALESWDGRVPTG 702



 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 74/176 (42%), Gaps = 17/176 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+L N    +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 352 VAILGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWNGRRFWVQDTGGWDPDA 411

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
             +     ++    ++ AD+I+ + +    I +  E+   K        + +  K D  +
Sbjct: 412 KGMHAAIARQAEGAMKTADVIVFVVDSQVGITASDEMLARKLHRAEQPVVLVANKFDSPT 471

Query: 334 TYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            Y +         +  + +S+  G G  ++++++  +  +K ++   +    +  L
Sbjct: 472 QYGDLAEFWALGLDNPYPVSAKHGHGAADVLDEVIRLFPDKPRQESITSGPRRVAL 527


>gi|122700821|emb|CAL87999.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|213155967|ref|YP_002318012.1| small GTP-binding protein [Acinetobacter baumannii AB0057]
 gi|301346486|ref|ZP_07227227.1| GTP-binding protein EngA [Acinetobacter baumannii AB056]
 gi|301594209|ref|ZP_07239217.1| GTP-binding protein EngA [Acinetobacter baumannii AB059]
 gi|254783128|sp|B7I5H1|DER_ACIB5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|213055127|gb|ACJ40029.1| small GTP-binding protein [Acinetobacter baumannii AB0057]
          Length = 469

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 112/278 (40%), Gaps = 38/278 (13%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 73  EQSKTAINEADIIIFVVDARAGLLASDEQIARELRTL-GKKIYLVANKVDGVHAEAALVE 131

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAG 231
              L   E   V     + V   +  +  DI          E  ++ G ++ I+G  N G
Sbjct: 132 FYKLGMGEPLQVAASHGRGVQQMLEDVLQDIP---EDENPEEHDKDTGLRLAIIGRPNVG 188

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KS+L N L  +D  +  D PGTTRD + I  + EG    + DTAG+R     D+++EK  
Sbjct: 189 KSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVRRKGKVDEMIEKFS 248

Query: 289 IKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEE-- 338
           I +T   +++A +++++ +      ++++     +       +    K D  S Y  +  
Sbjct: 249 IVKTLQAMKDAHVVVVVVDAREGIVEQDLHLIGYALEAGRAMVIAINKWDNMSEYDRKQC 308

Query: 339 --------------YDHLISSFTGEGLEELINKIKSIL 362
                           HLIS+  G G+ EL   I    
Sbjct: 309 KLDVERRFDFIPWARIHLISALHGTGVGELYPSIHRAY 346



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E++
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGESE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
             ++    +++   +  AD+I+ + +  +    S  +              +  K D
Sbjct: 65  CGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVD 121


>gi|149204177|ref|ZP_01881145.1| GTP-binding protein EngA [Roseovarius sp. TM1035]
 gi|149142619|gb|EDM30664.1| GTP-binding protein EngA [Roseovarius sp. TM1035]
          Length = 488

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 18/157 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V + PG TRD+      L      + DTAG+ +
Sbjct: 3   FSVAIVGRPNVGKSTLFNRLVGKRLALVDNQPGVTRDLREGAARLGDLRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
            TD+ ++    K T   V+ AD+ L + +          S  EI   ++   I    K++
Sbjct: 63  ATDESLQGRMRKLTERAVDMADICLFVIDARTGVTPTDESLAEILRKRSAHVILAANKAE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
             +      +           +S+  GEGL +L +++
Sbjct: 123 GSAADAGVIEAWGLGLGEPIRMSAEHGEGLNDLYSQL 159



 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 78/187 (41%), Gaps = 29/187 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N +  ++  +     G TRD +++ +D +G  V+I DTAG+R+
Sbjct: 202 MQVAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLRIDWDGMPVRIFDTAGMRK 261

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
                D +EK  +      V+ A+++++L +     E        ++  +    +    K
Sbjct: 262 KAKVQDKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVVVAINK 321

Query: 329 SD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D                  L           +S+ TG+GL+ L + +        +++ 
Sbjct: 322 WDMEPDKSDKIRELREAFERLLPQLRGAPLVTVSAKTGKGLDRLRDAVAKAHEVWNRRVT 381

Query: 371 FSIPSHK 377
            +  +  
Sbjct: 382 TAQLNRW 388


>gi|122701709|emb|CAL88244.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAILSALN 167


>gi|62185493|ref|YP_220278.1| GTP-binding protein EngA [Chlamydophila abortus S26/3]
 gi|81312359|sp|Q5L4W4|DER_CHLAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|62148560|emb|CAH64331.1| putative GTP-binding protein [Chlamydophila abortus S26/3]
          Length = 474

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 97/258 (37%), Gaps = 29/258 (11%)

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
                + I K+  + +  E   +  EE   +     E      FL +D     +      
Sbjct: 148 DKHIDKLIHKIKTLANVPEVVEEPREEMHEEEVPGMEFPETKEFLSDD-EDEDTAFSQSS 206

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +     KI ++G  N GKSS+ NAL  ++  I+ ++PGTTRD + I            DT
Sbjct: 207 VADKPLKIALIGRPNVGKSSIINALLNEERCIIDNVPGTTRDNIDILYSHNDRSYLFIDT 266

Query: 275 AGIRE---TDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFP--KNIDFI 323
           AG+R+     + +E     RT   +  AD+ LL+ +         K+ +S    +    I
Sbjct: 267 AGLRKMKSVKNSIEWISSSRTEKAIARADICLLVIDATHHLSSYDKRILSLISKQKKPHI 326

Query: 324 FIGTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFK 367
            +  K DL      E+                   IS+ T   L ++ + I  + +    
Sbjct: 327 ILVNKWDLIEGVRMEHYIRDLRATDMYIGQSKILCISAATKRNLRQIFSSIDELHTTVSS 386

Query: 368 KLPFSIPSHKRHLYHLSQ 385
           K+P  +  +K     L +
Sbjct: 387 KVPTPVV-NKTLALALQK 403



 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 20/163 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-R 278
            +I ILG  N GKSSLFN + K+ +AIV    GTTRD L  ++   G  V++ DT G+ +
Sbjct: 2   LRIAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWGIPVQVIDTGGVDK 61

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD 330
           +++D  +K   K+       AD++LL+ +I    ++ +    K         I +  K+D
Sbjct: 62  DSEDHFQKHIYKQALAGANEADILLLVIDIRCGITELDAEIAKQLLYLKKPLILVANKAD 121

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                     LY     E    +S+   + +++LI+KIK++ +
Sbjct: 122 TLKDEYRVHELYKIGISEI-VTVSASHDKHIDKLIHKIKTLAN 163


>gi|224368191|ref|YP_002602354.1| Era [Desulfobacterium autotrophicum HRM2]
 gi|223690907|gb|ACN14190.1| Era [Desulfobacterium autotrophicum HRM2]
          Length = 300

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKS+L N +  + ++I +  P TTRD +   ++  G  +   DT GI    
Sbjct: 16  IAIVGAPNAGKSTLLNTVLGQKISITSKKPQTTRDRILGVVERPGAQIIFVDTPGIHRAH 75

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY- 332
            ++ K+ + +    V++ D +LL+ ++ SK         E    +N   +    K DL  
Sbjct: 76  SLLNKKIVDQALSAVDDVDAVLLMIDVTSKDTESEALIIEQLQKRNKAVVLALNKIDLVK 135

Query: 333 ------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                       S +  +    +S+ TG+  E+L+ +++  L    +  P    +     
Sbjct: 136 SNEILPLIARYASLHEFKAVIPVSAKTGDQTEKLLAEVQRCLPPGQRLFPKDTLTDVSQR 195

Query: 381 YHLSQTVR 388
           +   + +R
Sbjct: 196 FIAGEMIR 203


>gi|51598763|ref|YP_072951.1| GTP-binding protein EngA [Borrelia garinii PBi]
 gi|81825627|sp|Q661B2|DER_BORGA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|51573334|gb|AAU07359.1| GTP-binding protein [Borrelia garinii PBi]
          Length = 433

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 17/199 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +   S ++  +  +   K     +    +L F     V     + +     FLK ++   
Sbjct: 107 LRKYSSKVILVLNKVDTKDKEFLAHKFHNLGFKRYFLVSALHRRGITKLRDFLKVEVGRV 166

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
             + ++        K+ I+G  N+GKS+L N L+  +++IV+D PGTTRD +   L   G
Sbjct: 167 NIEEEVN------IKVGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKTKLTRNG 220

Query: 267 YLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISF-- 316
            + +I DTAGIR     +++VE   + R    ++  D++ LL ++  +     K+I+   
Sbjct: 221 KVFEIIDTAGIRRRARVNEVVEYYSVNRALKVIDIVDIVFLLIDVEEELTSQDKKIAHYV 280

Query: 317 -PKNIDFIFIGTKSDLYST 334
             K    I + +K DL   
Sbjct: 281 TKKGKGIIIVFSKWDLLEE 299



 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 16/169 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN +     +I     G TRD++     +  +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRILDAKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNI--DFIFIGTKSDLYS 333
            D + K  +++    +E  DLILL+ ++N       + I   +      I +  K D   
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDVNEILLEDYEIIERLRKYSSKVILVLNKVDTKD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                +             S+    G+ +L + +K  +     +   +I
Sbjct: 126 KEFLAHKFHNLGFKRYFLVSALHRRGITKLRDFLKVEVGRVNIEEEVNI 174


>gi|227503688|ref|ZP_03933737.1| GTP-binding protein EngA [Corynebacterium accolens ATCC 49725]
 gi|227075724|gb|EEI13687.1| GTP-binding protein EngA [Corynebacterium accolens ATCC 49725]
          Length = 527

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 26/223 (11%)

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           + D+ +E+D++   S++           +S  +      E       + I+G  N GKSS
Sbjct: 55  EADYGDEDDLEQPLSEDEWE-------QLSQSLGFADATEEALC--TVAIVGRPNVGKSS 105

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N    +  A+V D PG TRD ++   D  G    + DT G       +  +  ++  L
Sbjct: 106 LVNRFLGRREAVVEDHPGVTRDRVSYVADWNGQRFIVQDTGGWDPNVKGMHADIARQAEL 165

Query: 295 EVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYSTYTE--------- 337
            ++ AD+I+++ +    I    E+   +     +  I +  K D  + Y +         
Sbjct: 166 AMDTADVIVMVVDTKVGITETDEVMARRLQKSPVPVIVVSNKFDSDNQYADMAQFYALGL 225

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                +S+  G G  +++++I      + ++   +    +  L
Sbjct: 226 GDPWPVSAQHGRGGADVLDEILRSFPEEPRETSITSGPRRVAL 268



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 85/221 (38%), Gaps = 28/221 (12%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
               S +       + ++I     +      I +G + + ++G  N GKSSL N L  ++
Sbjct: 228 PWPVSAQHGRGGADVLDEILRSFPEEPRETSITSGPRRVALVGRPNVGKSSLLNKLTSEE 287

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENAD 300
            ++V ++ GTT D +   + L+  L K  DTAG+R+        E     RT   ++ A+
Sbjct: 288 RSVVDNVAGTTVDPVDSLVQLDEQLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAE 347

Query: 301 LILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST-----YTEEYD------- 340
           + ++L + + +          +        +    K DL           E D       
Sbjct: 348 VCIMLIDASEEISEQDQRVLNMVLESGKALVIAFNKWDLMDEDRRYYLDREIDEQLRHLP 407

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                 IS+ TG  L++L   +   L +  +++     ++ 
Sbjct: 408 WVTRVNISAETGRALQKLEPAMIEALESWDQRVSTGQLNNW 448


>gi|284045183|ref|YP_003395523.1| ribosome-associated GTPase EngA [Conexibacter woesei DSM 14684]
 gi|283949404|gb|ADB52148.1| ribosome-associated GTPase EngA [Conexibacter woesei DSM 14684]
          Length = 484

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 14/166 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + S +      E   +  ++ ++G  N GKSSL N +   D  IV+++ GTTRD 
Sbjct: 152 DLLDRVVSRLPDESEVEEDEDLVRLALIGRPNVGKSSLVNKMLGSDRVIVSEVAGTTRDA 211

Query: 258 LTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           + +    E   + + DTAG+R   +  D +E     R+    E AD+ L++ +       
Sbjct: 212 IDLPFRFEDRRLILVDTAGMRRQAKVGDSIEYYTALRSRRAAERADVALVVCDAQEGVTS 271

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE---EYDHLISSFTGE 349
                 E++         +  K DL     E   + DH  +    +
Sbjct: 272 QDLRIAELAMQSGCATALVLNKWDLTGGEDEPEFDLDHERARVNNK 317



 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 18/162 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ ++G+ N GKSSL N L +   A+V + PG TRD   +  +  G    + DT G+  
Sbjct: 1   MKVAVVGYPNVGKSSLVNRLTQSREAVVHERPGVTRDRKELQTEWNGRRFTLIDTGGVDL 60

Query: 280 TDDIVEKEGI-KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            D    +  I ++    + +A L L + +  +          ++    ++  I    K D
Sbjct: 61  EDRDEMQRSIQEQARAALADAQLALFVVDAQAGLRPGDEEMADLLRRTHVPVILAANKVD 120

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
                T   +           +S+  G G  +L++++ S L 
Sbjct: 121 SVKDVTLAAEFYALGFGDPVAVSAAQGLGTGDLLDRVVSRLP 162


>gi|257055518|ref|YP_003133350.1| GTP-binding protein EngA [Saccharomonospora viridis DSM 43017]
 gi|256585390|gb|ACU96523.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Saccharomonospora viridis DSM 43017]
          Length = 470

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 89/204 (43%), Gaps = 29/204 (14%)

Query: 198 FLKNDISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L + +   + +   + G +     ++ ++G  N GKSSL N L  +  A+V  + GTT 
Sbjct: 184 DLLDAVVDALPEAPRETGLVEAGPRRVALVGKPNVGKSSLLNKLTGEQRAVVDSVAGTTV 243

Query: 256 DVLTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLLKEIN--- 309
           D +   ++L+G L +  DTAG+R+   T    E     RT   ++ A+++++L + +   
Sbjct: 244 DPVDSLVELDGQLWRFIDTAGLRKRVQTASGTEYYASLRTKNAIDAAEVVIVLLDASEPL 303

Query: 310 SKKEISF-----PKNIDFIFIGTKSDLYST-----YTEEYD-----------HLISSFTG 348
           S++++             +    K DL           E D             +S+ TG
Sbjct: 304 SEQDLRIVTSVADAGRALVLAFNKWDLVDEERRHQLDREIDRGLVRVPWAERVNVSALTG 363

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
             + +L   +++ L++  +++P  
Sbjct: 364 RAVHKLAPALRTALTSWDQRVPTG 387



 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 68/212 (32%), Gaps = 35/212 (16%)

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
             ++  FL+  + +   +  + +       + ++G  N GKS+L N +  +  A+V D P
Sbjct: 8   WSDESEFLR--LDAAAEEAAVEQSEAPQPVVAVVGRPNVGKSTLVNRILGRREAVVQDTP 65

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN------------- 298
           G TRD ++ D    G    + DT G       ++     +    +               
Sbjct: 66  GVTRDRISYDATWRGRRFTLVDTGGWEPGASGLQASITAQAERAMSEADVVLLVVDAVVG 125

Query: 299 ---ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---------ISSF 346
               D         +  ++        + +  K D  S   E              +S+ 
Sbjct: 126 PTATD--------EAVAKVLRRSKRPVLLVANKVDSESLLPEVASLWSLGLGEPYAVSAL 177

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
            G    +L++ +   L    ++        +R
Sbjct: 178 HGRSSGDLLDAVVDALPEAPRETGLVEAGPRR 209


>gi|169634401|ref|YP_001708137.1| GTP-binding protein EngA [Acinetobacter baumannii SDF]
 gi|254783130|sp|B0VKR4|DER_ACIBS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|169153193|emb|CAP02283.1| putative GTP-binding protein EngA [Acinetobacter baumannii]
          Length = 469

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 112/278 (40%), Gaps = 38/278 (13%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 73  EQSKTAINEADIIIFVVDARAGLLASDEQIARELRTL-GKKIYLVANKVDGVHAEAALVE 131

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAG 231
              L   E   V     + V   +  +  DI          E  ++ G ++ I+G  N G
Sbjct: 132 FYKLGLGEPLQVAASHGRGVQQMLEDVLQDIP---EDENPEEHDKDTGLRLAIIGRPNVG 188

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KS+L N L  +D  +  D PGTTRD + I  + EG    + DTAG+R     D+++EK  
Sbjct: 189 KSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVRRKGKVDEMIEKFS 248

Query: 289 IKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEE-- 338
           I +T   +++A +++++ +      ++++     +       +    K D  S Y  +  
Sbjct: 249 IVKTLQAMKDAHVVVVVVDAREGIVEQDLHLIGYALEAGRAMVIAINKWDNMSEYDRKQC 308

Query: 339 --------------YDHLISSFTGEGLEELINKIKSIL 362
                           HLIS+  G G+ EL   I    
Sbjct: 309 KLDVERRFDFIPWARIHLISALHGTGVGELYPSIHRAY 346



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E++
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGESE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD--- 330
             ++    +++   +  AD+I+ + +  +    S  +              +  K D   
Sbjct: 65  GGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGVH 124

Query: 331 ----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
               L   Y         +++  G G+++++  +   +        
Sbjct: 125 AEAALVEFYKLGLGEPLQVAASHGRGVQQMLEDVLQDIPEDENPEE 170


>gi|122702233|emb|CAL88307.1| GTPase [Helicobacter pylori]
 gi|122702601|emb|CAL88490.1| GTPase [Helicobacter pylori]
 gi|122702603|emb|CAL88491.1| GTPase [Helicobacter pylori]
 gi|122702609|emb|CAL88494.1| GTPase [Helicobacter pylori]
 gi|122702671|emb|CAL88525.1| GTPase [Helicobacter pylori]
 gi|122702673|emb|CAL88526.1| GTPase [Helicobacter pylori]
 gi|122702847|emb|CAL88613.1| GTPase [Helicobacter pylori]
 gi|122702863|emb|CAL88621.1| GTPase [Helicobacter pylori]
 gi|122702885|emb|CAL88632.1| GTPase [Helicobacter pylori]
 gi|242255866|gb|ACS88917.1| GTPase [Helicobacter pylori]
 gi|242255868|gb|ACS88918.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122700683|emb|CAL87930.1| GTPase [Helicobacter pylori]
 gi|122702235|emb|CAL88308.1| GTPase [Helicobacter pylori]
 gi|122702661|emb|CAL88520.1| GTPase [Helicobacter pylori]
 gi|242255832|gb|ACS88900.1| GTPase [Helicobacter pylori]
 gi|242255862|gb|ACS88915.1| GTPase [Helicobacter pylori]
 gi|242255864|gb|ACS88916.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALN 167


>gi|242309125|ref|ZP_04808280.1| GTP-binding protein engA [Helicobacter pullorum MIT 98-5489]
 gi|239524166|gb|EEQ64032.1| GTP-binding protein engA [Helicobacter pullorum MIT 98-5489]
          Length = 461

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 26/206 (12%)

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            L +    +  +   + + +  +       I I+G  N GKSSL NAL K++ ++V+++ 
Sbjct: 171 WLFEGAESEESLEDFL-EAEGADSQSEIINIGIIGRVNVGKSSLLNALLKQERSVVSEVA 229

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV--EKEGIKRTFLEVENADLILLLKEIN 309
           GTT D +    ++EG  V   DTAGIR    I   EK  + RT   ++  D+++L+ + +
Sbjct: 230 GTTIDPVDEKGEIEGRRVNFVDTAGIRRRGKIEGLEKFALNRTREVLKRTDIVILVLDAS 289

Query: 310 SKKEISFPK--------NIDFIFIGTKSDL----YSTYTEEY-----------DHLISSF 346
                   K         +  I +  K D+    Y    E++              IS+ 
Sbjct: 290 KPFVELDEKIAGLIDEFKLGVIVVLNKWDIAYKDYKAILEDFRLRFKFLEYAPILTISAK 349

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS 372
            G  +++L  +I  +  N   ++P +
Sbjct: 350 NGRHIQKLEQEIVKVYQNFSSRIPTA 375



 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKSSLFN   K  +AI +++ GTTRDV   ++ +      + DT GI ++D
Sbjct: 8   IAIMGRPNAGKSSLFNRFCKSRIAITSEVAGTTRDVKKANILILDTPFLLLDTGGIDQSD 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-SKKEIS-------FPKNIDFIFIGTKSDLYS 333
            +  K   + + L  ENADLIL L +      EI          KN +   +  K D   
Sbjct: 68  SLFAKVS-EHSHLAGENADLILYLVDGKMPPNEIDKKIFYSLQKKNPNVFLVVNKIDNEK 126

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSIL 362
              + ++           IS     G+  L + I  +L
Sbjct: 127 EQEKAWEFAEFGTQNLFFISVSHNRGIGRLEDSIVKLL 164


>gi|122700689|emb|CAL87933.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122700723|emb|CAL87950.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166


>gi|122701657|emb|CAL88218.1| GTPase [Helicobacter pylori]
 gi|242255818|gb|ACS88893.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       +S     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNVSVSHNRGISALIDAILSALN 167


>gi|122701377|emb|CAL88078.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|83943023|ref|ZP_00955483.1| GTP-binding protein EngA [Sulfitobacter sp. EE-36]
 gi|83846031|gb|EAP83908.1| GTP-binding protein EngA [Sulfitobacter sp. EE-36]
          Length = 491

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 18/173 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLADLRFTVVDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD ++    + T   V+ AD+ L + +             +I   K+   I    K++
Sbjct: 63  VTDDSLQGRMRRLTERAVDMADICLFMIDARVGVTPSDLVFADILRKKSAHVILAANKAE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +      +           +S+  GEGL +L + +  I     ++     P
Sbjct: 123 GKAADAGVIEAYSLGLGEPIRLSAEHGEGLNDLYSHLMPIADGFAERAQTDAP 175



 Score = 84.9 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 31/196 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N +  +D  +     G TRD +++  D     ++I DTAG+R+
Sbjct: 204 LQVAVVGRPNAGKSTLINQIMGEDRLLTGPEAGITRDAISLQTDWFDVPMRIFDTAGMRK 263

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      V+ A+++++L + +   E        ++  +    +    K
Sbjct: 264 RAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDADIPFEQQDLRIADLAEREGRAVVVAVNK 323

Query: 329 SD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D                  L           +S+ TG G++ L N I        +++ 
Sbjct: 324 WDLETDKQGKLKDLRESFERLLPQLKGAPLVTVSAKTGRGMDRLHNAIMRAYEVWNRRV- 382

Query: 371 FSIPSHKRHLYHLSQT 386
            +     R L  + + 
Sbjct: 383 -TTAQLNRWLSGMMEA 397


>gi|302806046|ref|XP_002984773.1| hypothetical protein SELMODRAFT_121150 [Selaginella moellendorffii]
 gi|300147359|gb|EFJ14023.1| hypothetical protein SELMODRAFT_121150 [Selaginella moellendorffii]
          Length = 490

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 18/176 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            L  D++S I + +       G     + I+G  N GKSS+ NA+  K+  IV+ + GTT
Sbjct: 183 DLLEDVTSAIKEKQDELEASEGDRPLSVAIIGRPNVGKSSILNAIVGKERTIVSPVSGTT 242

Query: 255 RDVLTIDLD-LEGYLVKISDTAGIRETDDI------VEKEGIKRTFLEVENADLILLLKE 307
           RD +  ++   EG + ++ DTAGIR+   I       E   ++     +  AD++ L+ E
Sbjct: 243 RDAIDTEVAGPEGKVFRLIDTAGIRKRAAIASGGSKTESLCVQSALRAIRRADVVALVIE 302

Query: 308 I-------NSKKEISFPKNIDFI-FIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
                   + +      K+      +  K D       E  +       E L  L 
Sbjct: 303 AMTCATEQDYRLGERIEKDGKACIIVVNKWDTVPDKNAESTYWYDMDVREKLRVLK 358



 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 68/194 (35%), Gaps = 42/194 (21%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+LFN +  +++AIV D PG TRD L   +        + DT G+   
Sbjct: 9   KVAIVGRPNVGKSALFNRIVGRNMAIVHDEPGVTRDRLYGRVRGSVQEFMLIDTGGVLTI 68

Query: 281 DDIVEK----------------------EGIK-RTFLEVENADLILLLKEINS---KKEI 314
               E                         I+ +    VE A  ++ + +  +     +I
Sbjct: 69  PTSAESGLAGGSVAAAQAKKDAAVAGLPSMIEQQAASAVEEACALVFVVDGQAGLTSADI 128

Query: 315 SFP-------KNIDFIFIGTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKI 358
                     K+        K +       +              S+ +G G+ +L+  +
Sbjct: 129 EIGNWLRRKFKHKKIALAVNKCESPKKGLLQAAEFWSLGFTPVPVSAISGSGVPDLLEDV 188

Query: 359 KSILSNKFKKLPFS 372
            S +  K  +L  S
Sbjct: 189 TSAIKEKQDELEAS 202


>gi|296112016|ref|YP_003622398.1| GTP-binding protein EngA [Leuconostoc kimchii IMSNU 11154]
 gi|295833548|gb|ADG41429.1| GTP-binding protein EngA [Leuconostoc kimchii IMSNU 11154]
          Length = 437

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 17/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++FN +A + +AIV D PG TRD L    +   Y  ++ DT GI   D
Sbjct: 6   VAIVGRPNVGKSTIFNRMAGERIAIVEDQPGVTRDRLYAPAEWLNYEFRMIDTGGIELGD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEI----SFPKNIDFIFIGTKSDLYS 333
           +    E   +  L ++ AD+I+++      + S  E+     +      +    K D   
Sbjct: 66  EPFLAEIRAQVELAIDEADVIVMVASGREGVTSADEVVAKMLYKTAKPIVLAINKVDNPE 125

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
              + YD           +S   G GL ++++ +     ++  +   
Sbjct: 126 MRQDIYDFYSLGLGEPYPVSGAHGLGLGDMLDAVVKNFPDEAAEQED 172



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 15/156 (9%)

Query: 194 NDILFLKNDISSHISQG--KLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
              L L + + + +     +  E    G  K  I+G  N GKSS+ NA+  +D  IV+ I
Sbjct: 147 AHGLGLGDMLDAVVKNFPDEAAEQEDEGVIKFSIIGRPNVGKSSIVNAMLGEDRVIVSSI 206

Query: 251 PGTTRDVLTID-LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLK 306
            GTTRD +    +  EG    + DTAG+R+   +    EK  + R    ++N+++IL++ 
Sbjct: 207 EGTTRDAIDTRFVTPEGDEFIMVDTAGMRKRGKVYENTEKYSVMRALKAIDNSNVILMVI 266

Query: 307 EINSK--------KEISFPKNIDFIFIGTKSDLYST 334
           +  +            +       I +  K D    
Sbjct: 267 DAEAGIREQDKHVAGFAHEAGRAMIIVVNKWDAIEK 302


>gi|160331570|ref|XP_001712492.1| engA [Hemiselmis andersenii]
 gi|159765940|gb|ABW98167.1| engA [Hemiselmis andersenii]
          Length = 519

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 13/128 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD--LEGYLVKISDTAGI 277
            K+ I+G  N GKSS+ N L  K  AIV+DIPGTTRD     +       +  + DTAGI
Sbjct: 255 IKVAIIGKPNVGKSSILNFLTNKKRAIVSDIPGTTRDSCDSFISGGSNSNIYNLIDTAGI 314

Query: 278 RET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
           R+    +   E   I RTF  ++  D +L + + ++          E    +    + I 
Sbjct: 315 RKKKMIEYGPEFFMINRTFKAIQKCDCVLFVIDASTGITEQDQKLSERIQEQGKSCVIIF 374

Query: 327 TKSDLYST 334
            K D  S+
Sbjct: 375 NKWDKISS 382



 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 23/174 (13%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK--KDVAIVTDIPGTTRDVLTIDLDL 264
           +    L    R    + I+G  N GKS+L N ++   +D +IV D+ G TRD        
Sbjct: 65  LENSYLKNQNRRIPIVAIVGRGNVGKSTLVNRISGAFEDGSIVHDLEGVTRDKNYRKAFW 124

Query: 265 EGYLVKISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--- 318
             +   ++DT G    ++     E +  ++    +E A++I+ + +   + +I+  +   
Sbjct: 125 CEHQFLVTDTGGFAFEENNSNKFEADVKEQALKAIEEANVIIFVVDGKCELDINDIELAN 184

Query: 319 -----NIDFIFIGTKSDLYSTYTEEYDHLI----------SSFTGEGLEELINK 357
                    +    KS+    +  E               S+  G   + L++K
Sbjct: 185 YLKFQKTPVLLAVNKSENLKKFDSEGSKFWSLGFGEPIPISAIHGTNTDVLLDK 238


>gi|326440452|ref|ZP_08215186.1| GTP-binding protein Der [Streptomyces clavuligerus ATCC 27064]
          Length = 482

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 82/226 (36%), Gaps = 21/226 (9%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D     D +     E+  +  F    +   I +   G +      + ++G  N GKS+L 
Sbjct: 6   DHGALGDAEYAEFMELAAEEGFDLEAVEEAIDEAGHGPL----PVLAVVGRPNVGKSTLV 61

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N +  +  A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +
Sbjct: 62  NRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDVLGIDASVAAQAEYAI 121

Query: 297 ENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------- 339
           E AD ++ + + +        +   +        +    K D  S   +           
Sbjct: 122 EAADAVVFVVDASVGATDTDEAVVRLLRRAGKPVVLCANKVDGPSGEADAAALWSLGLGE 181

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
            H +S+  G G  ++++ +   L     +   +     R +  + +
Sbjct: 182 PHPVSALHGRGTGDMLDAVLEALPEAPAQSFGTAVGGPRRIALIGR 227



 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N +A+++  +V ++ GTTRD +   ++L G   K  DTAGIR  
Sbjct: 221 RIALIGRPNVGKSSLLNKVAREERVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRRR 280

Query: 281 DDIVE---KEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKS 329
             + E        RT   VE A++ ++L + +    +        +       +    K 
Sbjct: 281 VHLQEGADYYASLRTAAAVEKAEVAVVLIDASENISVQDQRIVTMAVEAGRAMVIAFNKW 340

Query: 330 D---------LYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D         L      E           +S+ TG  +E+L+  I++ L+    ++P  
Sbjct: 341 DTLDEERRYYLEREIETELGQIAWAPRVNVSARTGRHMEKLVPAIETALAGWETRVPTG 399


>gi|4467655|emb|CAB37779.1| GTP-binding protein homologue [Helicobacter pylori]
 gi|122701539|emb|CAL88159.1| GTPase [Helicobacter pylori]
 gi|242255860|gb|ACS88914.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|239978699|ref|ZP_04701223.1| GTP-binding protein EngA [Streptomyces albus J1074]
 gi|291450591|ref|ZP_06589981.1| GTP-binding protein engA [Streptomyces albus J1074]
 gi|291353540|gb|EFE80442.1| GTP-binding protein engA [Streptomyces albus J1074]
          Length = 487

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 82/216 (37%), Gaps = 21/216 (9%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
              +D +  E  + +     E+  +  F  +D+   I +   G +      + ++G  N 
Sbjct: 4   HHISDDEHGELGEAEYAQFMELAAEEGFDIDDVEDAIEEAGHGPL----PVLAVVGRPNV 59

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G  +    ++     
Sbjct: 60  GKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDVLGIDASVAA 119

Query: 291 RTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY--- 339
           +    ++ AD ++ + +          +   +        +    K D  S   +     
Sbjct: 120 QAEYAIDAADAVVFVVDATVGATDTDAAVVRLLRKAGKPVVLCANKVDGPSAEADAAMLW 179

Query: 340 ------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
                  H +S+  G G  ++++ +   L +   + 
Sbjct: 180 SLGLGEPHPVSALHGRGTGDMLDAVIEALPDAPAQT 215



 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 103/282 (36%), Gaps = 32/282 (11%)

Query: 123 IDLLEAESLADLISS-----ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
             +  A+++  ++ +     +T+      +      +     +         + +   L 
Sbjct: 123 YAIDAADAVVFVVDATVGATDTDAAVVRLLRKAGKPVVLCANKVDGPSAEADAAMLWSLG 182

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             E   V     +   + +  +   +    +Q   G       +I ++G  N GKSSL N
Sbjct: 183 LGEPHPVSALHGRGTGDMLDAVIEALPDAPAQTFGGAAPGGPRRIALIGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFL 294
            +A++D  +V ++ GTTRD +   ++L G   K  DTAGIR+   + +        RT  
Sbjct: 243 KVAREDRVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRKRVHLQQGADYYASLRTAA 302

Query: 295 EVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD---------LYSTYTE 337
            VE A++ ++L +      +   +            +    K D         L      
Sbjct: 303 AVEKAEVAVILIDAGESISVQDQRIVTMAVDSGRAIVVAYNKWDTLDEERRYYLEREIET 362

Query: 338 EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           E           +S+ TG  +E L+  I++ L+    ++P  
Sbjct: 363 ELAQIAWAPRVNVSAATGRHMERLVPAIETALAGWETRVPTG 404


>gi|239827759|ref|YP_002950383.1| GTP-binding protein Era [Geobacillus sp. WCH70]
 gi|239808052|gb|ACS25117.1| GTP-binding protein Era [Geobacillus sp. WCH70]
          Length = 302

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +      +   +   D
Sbjct: 4   EGYKSGF-VSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
           T G+ +    +    +K     +   DLIL +               E     N     +
Sbjct: 63  TPGMHKPKHKLGDFMMKVALNALREVDLILFMINAEEGFGRGDAFIIEQLKAVNTPVFLV 122

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L   Y + Y       IS+  G  +E L+ +IK  L    +  P  
Sbjct: 123 INKIDKVHPDDLLPLIDQYKDLYPFAEIIPISALQGNNIETLVEQIKKYLPEGPQYYPPD 182

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +++ +R
Sbjct: 183 QITDHPERFIIAELIR 198


>gi|122701329|emb|CAL88054.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I  +L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVLN 167


>gi|91788466|ref|YP_549418.1| GTP-binding protein EngA [Polaromonas sp. JS666]
 gi|123355649|sp|Q12AC2|DER_POLSJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|91697691|gb|ABE44520.1| Small GTP-binding protein domain [Polaromonas sp. JS666]
          Length = 447

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 32/199 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ + G  N GKS+L N    ++  +  D+PGTTRD +++  +  G   ++ DTAG+R 
Sbjct: 180 IRLAVAGRPNVGKSTLINTWLGEERLVSFDLPGTTRDAISVPFERAGQKFELIDTAGLRR 239

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTK 328
                + +EK  + +T   +E A+++LLL +      +    I+          +    K
Sbjct: 240 KGKVFEAIEKFSVVKTLQAIEGANVVLLLLDATQGVTDQDAHIAGYILESGRAVVLAINK 299

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D    Y  E                  H IS+   +GL  +   I    ++  +K+   
Sbjct: 300 WDAVDAYQRETLERSIETRLAFLKFASIHKISAIKRQGLAPVWKSIVQAHASANRKMSTP 359

Query: 373 IPSHKRHLYHLSQTVRYLE 391
           + +       L + V++ +
Sbjct: 360 VLTR-----LLLEAVQFQQ 373



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS++FN L K   AIV D  G TRD    +  L  +   + DT G   + 
Sbjct: 5   IALVGRPNVGKSTIFNRLTKTRDAIVADFAGLTRDRHYGNGKLGSHEYIVIDTGGFEPDA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310
              + KE  K+T   V  AD+++ + +  +
Sbjct: 65  ASGIYKEMAKQTRQAVAEADVVIFVVDARA 94


>gi|88810613|ref|ZP_01125870.1| GTP-binding protein EngA [Nitrococcus mobilis Nb-231]
 gi|88792243|gb|EAR23353.1| GTP-binding protein EngA [Nitrococcus mobilis Nb-231]
          Length = 476

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 32/199 (16%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              ++ I+G  N GKS+L N L  ++  +V D PGTTRD + I  + +G+   + DTAG+
Sbjct: 181 ERIRVAIVGRPNVGKSTLINRLLGEERVLVHDQPGTTRDSIFIPFERDGFAYTLIDTAGM 240

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEIS-----FPKNIDFIFIG 326
           R    +    EK    +T   V  A +++LL + +   +++++             +   
Sbjct: 241 RRRSRVYEAVEKFSAIKTLQAVTAAQVVILLLDAHESITEQDVRIIGYVLDAGRALVLAV 300

Query: 327 TKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            K D       E                  + IS+  G G+  L   ++   ++  +KL 
Sbjct: 301 NKWDGLEPSRREQIRRGLERKLGFLDFAKLYFISALYGTGVGLLYGAVQQAYASSCRKLD 360

Query: 371 FSIPSHKRHLYHLSQTVRY 389
               +       L++ V  
Sbjct: 361 TPQLNR-----ILTEAVAA 374



 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 66/186 (35%), Gaps = 20/186 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IV++G  N GKS+LFN L +   A+V D P  TRD       +      + DT G+ + +
Sbjct: 5   IVLVGRPNVGKSTLFNCLTRSRDALVADFPELTRDRQYGRGRIGPCAYIVVDTGGMGQGN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYS 333
             + +    +    +  AD +L L +  S    +          +      +  K D   
Sbjct: 65  GAISEGVQAQARQAIAQADAVLFLVDARSGPTAADEALAGELRAQGKQLFLVPNKVDGLD 124

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
                 D         H I++  G G+  L   + S+L      +   +    R    + 
Sbjct: 125 ARVVAADFYTLGLGDPHPIAAAHGTGVARL---MASVLQGMTAAVNEVVEPPYRRDTAVE 181

Query: 385 QTVRYL 390
           +    +
Sbjct: 182 RIRVAI 187


>gi|317452851|emb|CBL87861.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I ++L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNVLN 167


>gi|122702789|emb|CAL88584.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSAL 166


>gi|122702213|emb|CAL88297.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAILNALN 167


>gi|122701435|emb|CAL88107.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILNALN 167


>gi|122700645|emb|CAL87911.1| GTPase [Helicobacter pylori]
 gi|122702599|emb|CAL88489.1| GTPase [Helicobacter pylori]
 gi|122702781|emb|CAL88580.1| GTPase [Helicobacter pylori]
 gi|122702785|emb|CAL88582.1| GTPase [Helicobacter pylori]
 gi|242255848|gb|ACS88908.1| GTPase [Helicobacter pylori]
 gi|242255854|gb|ACS88911.1| GTPase [Helicobacter pylori]
 gi|242255870|gb|ACS88919.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|224534791|ref|ZP_03675363.1| ribosome-associated GTPase EngA [Borrelia spielmanii A14S]
 gi|224514039|gb|EEF84361.1| ribosome-associated GTPase EngA [Borrelia spielmanii A14S]
          Length = 433

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 17/212 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +   S ++  +  +   K     +    +L F     V     + +     FLK ++   
Sbjct: 107 LRKYSSKVILVLNKVDTKDKEFLAHEFHNLGFKRYFLVSAVHCRGITKLRDFLKVEV--- 163

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              G+         K+ I+G  N+GKS+L N L+  +++I++D PGTTRD +   +   G
Sbjct: 164 ---GEANIEDEVNIKVGIIGKPNSGKSTLINHLSGNEISIISDQPGTTRDFIKTKVTRNG 220

Query: 267 YLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS--- 315
            + +I DTAGIR     ++IVE   + R    ++  D++ LL ++     +  K+I+   
Sbjct: 221 KVFEIIDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVKEELTSQDKKIAHYV 280

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
             K    I + +K DL       ++ L S   
Sbjct: 281 VKKGKGIIIVFSKWDLVEESKGYFEALKSRVK 312



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 16/169 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++I+G  N GKS+LFN L     +I     G TRD++     ++ +  K+ DT G    
Sbjct: 6   KVLIVGRPNVGKSALFNRLLDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNI--DFIFIGTKSDLYS 333
            D + K  +++    +E  DLILL+ ++N       + I   +      I +  K D   
Sbjct: 66  KDEISKIVVQKVLSSLEKVDLILLVLDVNEILLEDYQIIEKLRKYSSKVILVLNKVDTKD 125

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                ++            S+    G+ +L + +K  +     +   +I
Sbjct: 126 KEFLAHEFHNLGFKRYFLVSAVHCRGITKLRDFLKVEVGEANIEDEVNI 174


>gi|302871791|ref|YP_003840427.1| GTP-binding protein Era [Caldicellulosiruptor obsidiansis OB47]
 gi|302574650|gb|ADL42441.1| GTP-binding protein Era [Caldicellulosiruptor obsidiansis OB47]
          Length = 300

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 97/231 (41%), Gaps = 32/231 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  K ++I++  P TTR+ +   L LE   +   DT G+    
Sbjct: 8   VALIGRPNVGKSTLLNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGVHPPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKN--IDFIFIGTKSDLY 332
           + + +  +K +   ++  DLIL + E          +  I   K+     I +  KSDL 
Sbjct: 68  NKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIEKLKDVETPKILVLNKSDLA 127

Query: 333 S-------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           S                 E+   I++  G   + L+++IK +L    K     + +  R 
Sbjct: 128 SKENVEMLKSIFSTKLNFEFIVDIAAINGYNCDLLLSRIKELLPEGPKYYLDDMTTDVRE 187

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
            + +++ +R   + +L+E+      IA   R A           + + +LD
Sbjct: 188 SFIVAEIIREKILLNLSEEVPHGVGIAIE-RFA---------ERENKDILD 228


>gi|292806654|gb|ADE42457.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806694|gb|ADE42477.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122702703|emb|CAL88541.1| GTPase [Helicobacter pylori]
 gi|292806446|gb|ADE42353.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I  +L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILRVLN 167


>gi|292806492|gb|ADE42376.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I  +L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILRVLN 167


>gi|242255822|gb|ACS88895.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERVYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122701519|emb|CAL88149.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFSISVSHNRGISALIDAILSVLN 167


>gi|122702279|emb|CAL88330.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166


>gi|122702881|emb|CAL88630.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFDISVSHNRGISTLIDAILSALN 167


>gi|122700881|emb|CAL88029.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNTLN 167


>gi|71894165|ref|YP_278273.1| GTP-binding protein EngA [Mycoplasma synoviae 53]
          Length = 438

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 14/166 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN L  + ++IV D PG TRD L   +      +KI DT GI   +
Sbjct: 8   IAIIGKPNVGKSTLFNRLNGRKISIVDDTPGVTRDRLYEVISWLNKEIKIIDTGGIEIKN 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD- 340
              +++   +  + +E AD+I  + + +S+        ++ +    K+ L      E + 
Sbjct: 68  APFQEQIQIQAKIAIEEADVIFFVFDGHSEISNDDLFIMNILRKANKTVLALANKLEGNK 127

Query: 341 -------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                          IS+  GEGL E +++    L  + K L  + 
Sbjct: 128 DFDYSWYKLGVDIFPISALHGEGLGEALDEACKHLFFEEKNLENNF 173



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 104/267 (38%), Gaps = 38/267 (14%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEE-----EDVQNFSSKEVLNDILFLKNDISSHIS 208
           + ++  +    +  + + +E + DF         D+   S+         L         
Sbjct: 105 IMNILRKANKTVLALANKLEGNKDFDYSWYKLGVDIFPISALHGEGLGEALDEACKHLFF 164

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           + K    + N +K+ I+G  NAGKSSL N L  +  +IV++IPGTTRD +   L ++   
Sbjct: 165 EEKN---LENNFKLSIIGKPNAGKSSLLNKLTNEYRSIVSEIPGTTRDSVKSFLKIKDQN 221

Query: 269 VKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINSKK---------EISF 316
            +I DTAGI     +VE      + R    +  +DL L++ +    +           + 
Sbjct: 222 FEIIDTAGIMRKSKLVESVDHYALMRAMSSLVESDLTLVVIDATIDELSHFDSRIIGYAL 281

Query: 317 PKNIDFIFIGTKSDLYSTYTEE------------------YDHLISSFTGEGLEELINKI 358
             N   + +  K DL                             IS+ +G  +++LI+ I
Sbjct: 282 EHNKPIVIVINKWDLVEKNQNTMMQYEKKLREKMKFSSWMPVVFISAKSGSRIDKLIDTI 341

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             +  N  +++  ++ ++      L Q
Sbjct: 342 LQVRENLNREIKPNLLANLILEAQLIQ 368


>gi|292806592|gb|ADE42426.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I ++L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNVLN 167


>gi|242255936|gb|ACS88952.1| GTPase [Helicobacter pylori]
 gi|242255938|gb|ACS88953.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I ++L+
Sbjct: 129 EKDRAYAFSSFGMPKSFNISVSHNRGISALIDAILNVLN 167


>gi|122702447|emb|CAL88414.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  L++ I + L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALVDAILNALN 167


>gi|161833759|ref|YP_001597955.1| GTP-binding protein EngA [Candidatus Sulcia muelleri GWSS]
 gi|293977869|ref|YP_003543299.1| ribosome-associated GTPase EngA [Candidatus Sulcia muelleri DMIN]
 gi|229807527|sp|A8Z608|DER_SULMW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|152206249|gb|ABS30559.1| GTP-binding protein EngA [Candidatus Sulcia muelleri GWSS]
 gi|292667800|gb|ADE35435.1| ribosome-associated GTPase EngA [Candidatus Sulcia muelleri DMIN]
          Length = 433

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 20/165 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+LFN +     +IV    G TRD      +  G    + DT G   E+
Sbjct: 5   VSIVGRPNVGKSTLFNRIIGYKKSIVNSKSGITRDRNYGFCNWNGIEFCLIDTGGYTNES 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDL 331
            +I +K+  ++    +  +D+IL L + ++          K I   K      +  K D+
Sbjct: 65  KNIFDKKICEQFLFALAESDVILFLVDPSNDILGIDYDISKRIRKLKKS-IYLVINKIDI 123

Query: 332 YSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFK 367
           Y      Y          + ISS  G G E+L++ I S      K
Sbjct: 124 YKNIYNTYKYCKFGITKTYCISSINGTGTEKLLDSIVSNFDKNIK 168



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 12/149 (8%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L + I S+  +  +    +N  +I I+G  N GKS+L N L  K+  IVT+I GTTRD
Sbjct: 153 EKLLDSIVSNFDK-NIKIYKKNIPRIAIVGRPNVGKSTLINTLLNKNKNIVTNISGTTRD 211

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKE 313
            + +     G    + DTAGIR+  +I   +E   + R    ++N+D+ LL+ +  S  E
Sbjct: 212 SIDVLYSKFGIECILVDTAGIRKKKNIKEDIEFYSVMRAIKSIQNSDVSLLIIDSKSGFE 271

Query: 314 --------ISFPKNIDFIFIGTKSDLYST 334
                   I    N   + +  K D+++ 
Sbjct: 272 SQDINIFKIIENNNKGIVLLINKWDIFNN 300


>gi|122702883|emb|CAL88631.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISVLIDAILSALN 167


>gi|33519978|ref|NP_878810.1| GTP-binding protein EngA [Candidatus Blochmannia floridanus]
 gi|33504324|emb|CAD83216.1| predicted GTPase [Candidatus Blochmannia floridanus]
          Length = 485

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 30/186 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
                +VI+G  N+GKS+  N L K++  IV+DIPGTTRD + I +          DTAG
Sbjct: 208 NEPIIVVIIGRPNSGKSTFVNYLLKEERMIVSDIPGTTRDSVYIPITYNNDKYMFVDTAG 267

Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK---KEISFPK-----NIDFIFI 325
           IR+   +    E+    +T   ++ A + L + +I      +++S        +   I  
Sbjct: 268 IRKKKHVSSVAEQISKLKTLQILKYAHVTLFILDIQEGIVNQDLSLLNFITKSSKSLIIA 327

Query: 326 GTKSDLYSTYT--------EEYD-----------HLISSFTGEGLEELINKIKSILSNKF 366
             K D++S+ T        EE +           H IS+  G G++ L   IK I     
Sbjct: 328 VNKYDIFSSKTGFDKTLMKEELNKKISFLNFVKIHYISALYGSGIKNLFQSIKKIHDFSK 387

Query: 367 KKLPFS 372
           +K+  +
Sbjct: 388 QKINTA 393



 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 20/157 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IV++G  N GKS+LFN L     A+V+  PG TRD     +  + +   + DT G     
Sbjct: 12  IVLVGQENVGKSTLFNRLTCTRDALVSSYPGLTRDRKYGYIKYKNFKFILIDTGGFNIFS 71

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSKKE------ISFPKNID--FIFIGTKSDLY 332
           D + ++ I  +T + ++ + +IL + +   +        I++ + +      +  K D  
Sbjct: 72  DTLIQDCINDQTNIAIQESCIILFVVDGKKQGSSEDWNIITYLRKLKKGIFVVINKIDNA 131

Query: 333 STYTE-----------EYDHLISSFTGEGLEELINKI 358
            +Y             +   +IS+  G G+  L++KI
Sbjct: 132 ISYNNYKIWDYYLYGIKNVVIISAVHGYGISTLLDKI 168


>gi|306836038|ref|ZP_07469028.1| ribosome-associated GTPase EngA [Corynebacterium accolens ATCC
           49726]
 gi|304568065|gb|EFM43640.1| ribosome-associated GTPase EngA [Corynebacterium accolens ATCC
           49726]
          Length = 527

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 85/224 (37%), Gaps = 18/224 (8%)

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKS 233
           D DF E E  +     E   +    +++           +        + I+G  N GKS
Sbjct: 45  DYDFDESEFGEADYGDEDDLEQPLSEDEWEQLSESLGFADATEEALCTVAIVGRPNVGKS 104

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           SL N    +  A+V D PG TRD ++   D  G    + DT G       +  +  ++  
Sbjct: 105 SLVNRFLGRREAVVEDQPGVTRDRVSYVADWNGQRFIVQDTGGWDPNVKGMHADIARQAE 164

Query: 294 LEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYSTYTE-------- 337
           + ++ AD+I+++ +    I    E+   +     +  I +  K D  + Y +        
Sbjct: 165 MAMDTADVIVMVVDTKVGITETDEVMARRLQKSPVPVIVVSNKFDSDNQYADMAQFYALG 224

Query: 338 -EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +S+  G G  +++++I      + ++   +    +  L
Sbjct: 225 LGDPWPVSAQHGRGGADVLDEILRSFPEEPRETSITSGPRRVAL 268



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 85/221 (38%), Gaps = 28/221 (12%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
               S +       + ++I     +      I +G + + ++G  N GKSSL N L  ++
Sbjct: 228 PWPVSAQHGRGGADVLDEILRSFPEEPRETSITSGPRRVALVGRPNVGKSSLLNKLTSEE 287

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENAD 300
            ++V ++ GTT D +   + L+  L K  DTAG+R+        E     RT   ++ A+
Sbjct: 288 RSVVDNVAGTTVDPVDSLVQLDEQLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAE 347

Query: 301 LILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST-----YTEEYD------- 340
           + ++L + + +          +        +    K DL           E D       
Sbjct: 348 VCIMLIDASEEISEQDQRVLNMVLESGKALVIAFNKWDLMDEDRRYYLDREIDEQLRHLP 407

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                 IS+ TG  L++L   +   L +  +++     ++ 
Sbjct: 408 WVTRVNISAETGRALQKLEPAMIEALESWDQRVSTGQLNNW 448


>gi|292806514|gb|ADE42387.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            +  KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALWSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|118618580|ref|YP_906912.1| GTP-binding protein EngA [Mycobacterium ulcerans Agy99]
 gi|166225828|sp|A0PSX2|DER_MYCUA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|118570690|gb|ABL05441.1| GTP-binding protein, EngA [Mycobacterium ulcerans Agy99]
          Length = 469

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 111/288 (38%), Gaps = 39/288 (13%)

Query: 119 ENGKIDLLEAESLADLISSE------TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           E   + +  A+++  ++ +        E   R+ +    G+   L    +D     ++  
Sbjct: 100 EQASVAMRTADAVVLVVDATVGATTADEAAARILLRS--GKPVFLAANKVDS---DKAEA 154

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAG 231
           +A   +S      +  S      +  L + +   + +         G + + ++G  N G
Sbjct: 155 DAATLWSMGLGEPHAISAMHGRGVANLLDTVLKKLPEVAESVSAGGGPRRVALVGKPNVG 214

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KSSL N LA  + ++V D+ GTT D +   ++L G + +  DTAG+R         E   
Sbjct: 215 KSSLLNKLAGDERSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRRKVGQASGHEFYA 274

Query: 289 IKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST-----Y 335
             RT   ++ A++++LL + +            +        +    K DL         
Sbjct: 275 SVRTRGAIDAAEVVVLLIDASQPLTEQDLRVLSMVIEAGRAVVLAYNKWDLVDEDRRDLL 334

Query: 336 TEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             E D             IS+ TG  +++L+  +++ L++   ++P  
Sbjct: 335 DREIDRELVQIRWAQRVNISAKTGRAVQKLVPAMETALASWDTRIPTG 382



 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V DIPG TRD ++ D    G    + DT G     
Sbjct: 32  LAIVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDALWNGRRFVVQDTGGWEPDA 91

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             +++   ++  + +  AD ++L+ +          +   I             K D   
Sbjct: 92  KGLQQLVAEQASVAMRTADAVVLVVDATVGATTADEAAARILLRSGKPVFLAANKVDSDK 151

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              +            H IS+  G G+  L++ +   L    + +   
Sbjct: 152 AEADAATLWSMGLGEPHAISAMHGRGVANLLDTVLKKLPEVAESVSAG 199


>gi|292806448|gb|ADE42354.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISTLIDAILNALN 167


>gi|122702625|emb|CAL88502.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       +S     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNVSVSHNRGISALIDAILNALN 167


>gi|239947026|ref|ZP_04698779.1| ribosome-associated GTPase EngA [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921302|gb|EER21326.1| ribosome-associated GTPase EngA [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 447

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    +  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSTRKKAIVHDLPGVTRDRKYTEGKIGSFEFLLIDTPGLEENP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLYS 333
           D + ++ +++T   +  ADLI  + +       + K   SF +  N   I +  K +   
Sbjct: 66  DSMGEKLMEQTTKAILEADLICFMVDGRSGILPDDKLLGSFVRKYNKPAILVVNKCEKAF 125

Query: 334 TYTEEYDH-------LISSFTGEGLEELINKIKSILSNK 365
            + +EY          IS+  G GL  L ++I + L  +
Sbjct: 126 DFDKEYYKLGFDSMVAISAEHGTGLINLYDEIIAKLPEE 164



 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 85/204 (41%), Gaps = 35/204 (17%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           +  I ++I+    G+ ++    IV+ G  NAGKS+  NAL   +  +     G TR+ + 
Sbjct: 164 EESIETNIADPIKGDCLQ----IVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIE 219

Query: 260 IDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI---NSKKE 313
           ID   +   +K+ DTAG+R+     + +EK     T   ++ A+ ++L+ +      +++
Sbjct: 220 IDWQYKNNHIKLIDTAGLRKKSTITESLEKLSASDTINSIKFANTVILMIDALVPLKQQD 279

Query: 314 ISFP-----KNIDFIFIGTKSDLYSTYTEEYDH--------------------LISSFTG 348
           ++       +    + +  K DL     +E                        IS+   
Sbjct: 280 LNIASHVVNEGRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQVKGVPVLFISAINK 339

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           + +E++++    I     KK+  S
Sbjct: 340 QNIEQVLDACLKIYKIWNKKITTS 363


>gi|183982543|ref|YP_001850834.1| GTP-binding protein, EngA [Mycobacterium marinum M]
 gi|238690962|sp|B2HRU9|DER_MYCMM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|183175869|gb|ACC40979.1| GTP-binding protein, EngA [Mycobacterium marinum M]
          Length = 469

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 111/288 (38%), Gaps = 39/288 (13%)

Query: 119 ENGKIDLLEAESLADLISSE------TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           E   + +  A+++  ++ +        E   R+ +    G+   L    +D     ++  
Sbjct: 100 EQASVAMRTADAVVLVVDATVGATTADEAAARILLRS--GKPVFLAANKVDS---DKAEA 154

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAG 231
           +A   +S      +  S      +  L + +   + +         G + + ++G  N G
Sbjct: 155 DAATLWSMGLGEPHAISAMHGRGVADLLDTVLKKLPEVAESVSAGGGPRRVALVGKPNVG 214

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KSSL N LA  + ++V D+ GTT D +   ++L G + +  DTAG+R         E   
Sbjct: 215 KSSLLNKLAGDERSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRRKVGQASGHEFYA 274

Query: 289 IKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST-----Y 335
             RT   ++ A++++LL + +            +        +    K DL         
Sbjct: 275 SVRTRGAIDAAEVVVLLIDASQPLTEQDLRVLSMVIEAGRAVVLAYNKWDLVDEDRRDLL 334

Query: 336 TEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             E D             IS+ TG  +++L+  +++ L++   ++P  
Sbjct: 335 DREIDRELVQIRWAQRVNISAKTGRAVQKLVPAMETALASWDTRIPTG 382



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V DIPG TRD ++ D    G    + DT G     
Sbjct: 32  LAIVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDALWNGRRFVVQDTGGWEPDA 91

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             +++   ++  + +  AD ++L+ +          +   I             K D   
Sbjct: 92  KGLQQLVAEQASVAMRTADAVVLVVDATVGATTADEAAARILLRSGKPVFLAANKVDSDK 151

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              +            H IS+  G G+ +L++ +   L    + +   
Sbjct: 152 AEADAATLWSMGLGEPHAISAMHGRGVADLLDTVLKKLPEVAESVSAG 199


>gi|122702489|emb|CAL88435.1| GTPase [Helicobacter pylori]
 gi|122702495|emb|CAL88438.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAILNALN 167


>gi|93004284|gb|ABE97062.1| YphC [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVLHNRGISALIDAILSAL 166


>gi|292806566|gb|ADE42413.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILSALN 167


>gi|242255828|gb|ACS88898.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + ++ S             F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDVKSIPSDENLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|317452831|emb|CBL87851.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFRKVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|295424887|ref|ZP_06817602.1| GTP-binding protein Era [Lactobacillus amylolyticus DSM 11664]
 gi|295065453|gb|EFG56346.1| GTP-binding protein Era [Lactobacillus amylolyticus DSM 11664]
          Length = 302

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 88/211 (41%), Gaps = 22/211 (10%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K     ++G+ + I+G  N GKS+L N L  + VAI ++ P TTR+ ++     +   V 
Sbjct: 2   KKETKFKSGF-VAIVGRPNVGKSTLMNRLVGEKVAITSNKPQTTRNRISGIYTSDDMQVV 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------KEISFPKNIDFI 323
             DT GI +    +++   K ++  + + DL++ + E +          ++     +   
Sbjct: 61  FVDTPGIFKPHSKLDEYMDKASYSSLNDVDLVMFMVEPDEAGKDDKFVADLLQKVKVPVF 120

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            I  K D         +  +Y +  D      +S+  G G+ +L+  +   L    +   
Sbjct: 121 LIINKVDEIHPDKLLPIIDSYRKLGDFAEFLPVSATEGIGIPDLLTALNKYLPEGPQYYG 180

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
               + +   + +++ +R  ++  L  ++  
Sbjct: 181 SDQITDRPEYFVVAELIRE-QILQLTAQEVP 210


>gi|122701693|emb|CAL88236.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|153005016|ref|YP_001379341.1| GTP-binding protein EngA [Anaeromyxobacter sp. Fw109-5]
 gi|152028589|gb|ABS26357.1| small GTP-binding protein [Anaeromyxobacter sp. Fw109-5]
          Length = 471

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  N GKS+  N+L   +  +V+D+PGTTRD +   ++  G    ++DTAGIR 
Sbjct: 201 IRLAIVGRPNVGKSTFVNSLLGHERFVVSDVPGTTRDAIDSLVEQRGQRFVVTDTAGIRR 260

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
              I   VE   + R+   ++ A+++  L +              +   K    + +  K
Sbjct: 261 KSAIAQAVEAYSVVRSMKAIDRAEVVACLLDATEAGVEQDARLLGLIAEKAKALLVVINK 320

Query: 329 SDLYSTYTEEYDHLISSFTG 348
            D+        D        
Sbjct: 321 WDIAEREGATQDWYRKELHK 340



 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 20/162 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN LA +  AIV D+PG TRD    D   +G  + + DT G   E+
Sbjct: 13  VALVGRPNVGKSTLFNRLAGRRAAIVQDVPGVTRDRNYADFSFDGRALSVVDTGGFEPES 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
            D +  +  ++  L VE A  ++L+ +          S  ++             K D  
Sbjct: 73  RDRLMSQVRQQAQLAVEEAAAVVLVVDGREGLTAVDRSVADLLRRAGKPLFVAVNKVDTA 132

Query: 333 STYTEEY-----------DHLISSFTGEGLEELINKIKSILS 363
            T  E              H +S+  G G+ +L+  I   L 
Sbjct: 133 RTEEEIPLAEFYQLGFGEVHSVSAEHGRGVGDLVEAIVEKLQ 174


>gi|122702887|emb|CAL88633.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERSYAFSSFGVPKSFNISVSHNRGISALIDAILSALN 167


>gi|26553682|ref|NP_757616.1| GTP-binding protein EngA [Mycoplasma penetrans HF-2]
 gi|37999697|sp|Q8EWH6|DER_MYCPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|26453688|dbj|BAC44020.1| predicted ATP/GTP-binding protein [Mycoplasma penetrans HF-2]
          Length = 444

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 30/198 (15%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N  + + + + + +          + +K  I+G  N GKSSL N +  +D  I ++I  T
Sbjct: 147 NHGIGIGDLLDAIVDTKLKEIKEEDTFKFCIIGRPNVGKSSLVNCILNEDRMITSNIANT 206

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINS 310
           TRD +  +   +  L  I DTAGIR    I E   K    R    +  ++LI+++ + + 
Sbjct: 207 TRDAIDSNFKKDNLLYTIIDTAGIRRKGKIQENVDKYAYLRVEQSISRSNLIVIVLDGSE 266

Query: 311 K--------KEISFPKNIDFIFIGTKSDLYSTYTEE-------------------YDHLI 343
           +          ++   NI  I +  K D+     E+                       +
Sbjct: 267 EFNEQDEVIAGLAHKANIPSIIVVNKWDIVKEKDEKTMNKFIKTIRIKFKFLSWTPIVFL 326

Query: 344 SSFTGEGLEELINKIKSI 361
           S+   + +  L N+IKSI
Sbjct: 327 SAIENKRINTLFNEIKSI 344



 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 23/162 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+LFN + K + +IV D PG TRD +  + +      K+ DT G+  
Sbjct: 2   LKVAIVGKPNVGKSTLFNRIIKVNKSIVDDKPGITRDRIYANAEWLTQHFKLIDTGGLML 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI-----------DFIFIGTK 328
            +   +K+   +    +  AD+I+ L  ++ K+ I+   +              +    K
Sbjct: 62  DEFDFKKQIELQVNYAITEADVIVFL--VSYKEGINNDDHYVAKILKKHKNKKILLAVNK 119

Query: 329 SDLYST----------YTEEYDHLISSFTGEGLEELINKIKS 360
           S+  +           +  +  + IS+  G G+ +L++ I  
Sbjct: 120 SETRNKDSYDDHEYLRFGFQKPYFISANHGIGIGDLLDAIVD 161


>gi|15894577|ref|NP_347926.1| GTP-binding protein Era [Clostridium acetobutylicum ATCC 824]
 gi|21263597|sp|Q97JI5|ERA_CLOAB RecName: Full=GTPase Era
 gi|15024224|gb|AAK79266.1|AE007641_12 ERA GTPase [Clostridium acetobutylicum ATCC 824]
 gi|325508709|gb|ADZ20345.1| GTP-binding protein Era [Clostridium acetobutylicum EA 2018]
          Length = 296

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 87/209 (41%), Gaps = 24/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + ++IV+  P TTR+ +   L  E Y +   DT G+    
Sbjct: 7   VTIIGRPNVGKSTLLNHIMGEKLSIVSSKPQTTRNNIQTILTGEEYQIVFVDTPGMHNPR 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLK--EINSKK------EISFPKNIDFIFIGTKSD--- 330
             + +  +K     +   D+ L +   ++  K+      E      +    +  K D   
Sbjct: 67  HKLGEYMVKVAKESMNEVDVALFVTTPDVEVKRGDLHILEQLKSAKVPVFLVVNKIDETT 126

Query: 331 ------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     Y+E ++      IS+  G+ +++LI  +   L+   K  P  +   K+  
Sbjct: 127 EERLAATLKNYSEAFEFQEIIPISAQKGKNVDKLIELMVKHLNEGPKYYPDDMIIDKQER 186

Query: 381 YHLSQTVRYLEMASLNE---KDCGLDIIA 406
           + +++ +R   +  L++       ++I+ 
Sbjct: 187 FIIAEIIREKALRFLSQEVPHGIAVEILQ 215


>gi|122700673|emb|CAL87925.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKATQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|296134487|ref|YP_003641734.1| small GTP-binding protein [Thermincola sp. JR]
 gi|296033065|gb|ADG83833.1| small GTP-binding protein [Thermincola potens JR]
          Length = 404

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 16/159 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           +   I I G+ NAGKSSL NAL  +++A+V+D PGTT D +   ++L     V + DTAG
Sbjct: 8   DRIHIAIFGNRNAGKSSLINALTGQNLAVVSDYPGTTTDPVYKSMELLPLGPVVLIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEIS---FPKNIDFIFIGTKS 329
           + +T D+ E     +T   +  ADL L+L +      S +++      K I  I + TK 
Sbjct: 68  LDDTGDLGELRK-GKTLEVLRKADLALVLVDAGCSNQSDEDLLHKIMEKKIPIIGVLTKI 126

Query: 330 DLYSTYTEEY-------DHLISSFTGEGLEELINKIKSI 361
           D +    +            +SS TG+G+ EL   +  +
Sbjct: 127 DKFGVPEDNLFSRKGIPWTPVSSKTGQGIHELKETLGKM 165


>gi|122700691|emb|CAL87934.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I + +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|300934024|ref|ZP_07149280.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium
           resistens DSM 45100]
          Length = 811

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 83/216 (38%), Gaps = 28/216 (12%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
               S +       + + + S          I +G + + ++G  N GKSSL N +  ++
Sbjct: 514 PFPVSAQHGRGAADVLDQVLSDFPDQPRETSIVSGPRRVALVGRPNVGKSSLLNKVTGEE 573

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENAD 300
            ++V ++ GTT D +   ++L+ +  +  DTAGIR   +T    E     RT   ++ A+
Sbjct: 574 RSVVDNVAGTTVDPVDSIVELDEHTWRFVDTAGIRKKTKTARGHEFYASLRTRAAIDAAE 633

Query: 301 LILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS-----TYTEEYD------- 340
           + + L + +            +        +    K DL           E D       
Sbjct: 634 VAIFLVDASEPIAEQDQRVLRLILDSGKALVVAYNKWDLVDEDRRWELEREIDLQLAHVP 693

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 IS+ TG  L++L   +   L +  K++P  
Sbjct: 694 WARRVNISAKTGRALKKLEPAMVEALESWDKRIPTG 729



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 78/198 (39%), Gaps = 18/198 (9%)

Query: 201 NDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           + +          E  R     + I+G  N GKS+L N    +  A+V D PG TRD ++
Sbjct: 357 DAVEEAFGIFGNDEAEREALCTVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRIS 416

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEIS 315
              +  G    + DT G       +     ++    ++ AD+I+ + +    I +  E+ 
Sbjct: 417 YLGEWTGRRFWVQDTGGWDPDAKGIHAAIARQAETAMDTADVIVFVVDTKVGITATDEVI 476

Query: 316 FPK----NIDFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
             K    +I  I +  K D  S Y +  +           +S+  G G  ++++++ S  
Sbjct: 477 ARKLQRSSIPVILVANKFDSDSQYADMAEFWGLGLGNPFPVSAQHGRGAADVLDQVLSDF 536

Query: 363 SNKFKKLPFSIPSHKRHL 380
            ++ ++        +  L
Sbjct: 537 PDQPRETSIVSGPRRVAL 554


>gi|122702747|emb|CAL88563.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                 ++S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYVFSSFGIPKSFNISVSHNRGISVLIDAILDALN 167


>gi|122701421|emb|CAL88100.1| GTPase [Helicobacter pylori]
 gi|122701485|emb|CAL88132.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|260549069|ref|ZP_05823290.1| small GTP-binding domain-containing protein [Acinetobacter sp.
           RUH2624]
 gi|260407797|gb|EEX01269.1| small GTP-binding domain-containing protein [Acinetobacter sp.
           RUH2624]
          Length = 469

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 112/278 (40%), Gaps = 38/278 (13%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 73  EQSKTAINEADIIIFVVDARAGLLASDEQIARELRTL-GKKIYLVANKVDGVHAEAALVE 131

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAG 231
              L   E   V     + V   +  +  D+          E  ++ G ++ I+G  N G
Sbjct: 132 FYKLGMGEPLQVAASHGRGVQQMLEDVLQDVP---EDENPEEHDKDTGLRLAIIGRPNVG 188

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KS+L N L  +D  +  D PGTTRD + I  + EG    + DTAG+R     D+++EK  
Sbjct: 189 KSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVRRKGKVDEMIEKFS 248

Query: 289 IKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEEY- 339
           I +T   +++A +++++ +      ++++     +       +    K D  S Y  +  
Sbjct: 249 IVKTLQAMKDAHVVVVVVDAREGIVEQDLHLIGYALEAGRAMVIAINKWDNMSEYDRKQC 308

Query: 340 ---------------DHLISSFTGEGLEELINKIKSIL 362
                           HLIS+  G G+ EL   I    
Sbjct: 309 KLDVERRFDFIPWAKIHLISALHGTGVGELYPSIHRAY 346



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E++
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGESE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
             ++    +++   +  AD+I+ + +  +    S  +              +  K D
Sbjct: 65  GGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVD 121


>gi|122702613|emb|CAL88496.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISVLIDAILSALN 167


>gi|122701603|emb|CAL88191.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|122702151|emb|CAL88266.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|75676210|ref|YP_318631.1| GTP-binding protein EngA [Nitrobacter winogradskyi Nb-255]
 gi|123613178|sp|Q3SR12|DER_NITWN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|74421080|gb|ABA05279.1| Small GTP-binding protein [Nitrobacter winogradskyi Nb-255]
          Length = 455

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 29/191 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  NAGKS++ N L  ++  + +   GTTRD ++++L+ +G   +I DTAG+R 
Sbjct: 184 IRVAIVGRPNAGKSTVINYLLSEERLLTSPEAGTTRDSISVELNWKGRDFRIFDTAGLRR 243

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--------FIGTK 328
              I    EK  +  T   V  A+ ++L+ +  ++ E    +  D I            K
Sbjct: 244 RSRIEAKLEKLSVADTLRAVRFAEAVVLMMDAQNRFEEQDLRIADLIEREGRALVIAVNK 303

Query: 329 SDL-------YSTYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL        ++   + DH            IS  TGEG++ L+  I++  +   +++ 
Sbjct: 304 WDLMKGGSARIASLRNDVDHWLPQIRGAPVVAISGLTGEGIDRLMIAIQTAYAVWNRRVA 363

Query: 371 FSIPSHKRHLY 381
            ++ +      
Sbjct: 364 TALLNRWFQQA 374



 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 18/162 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I I+G  N GKS+LFN L  + +A+V D PG TRD       L      + DTAG+ E
Sbjct: 3   FTIAIIGRPNVGKSTLFNRLVGQKLALVDDEPGVTRDRREGQARLGDLDFTVIDTAGLDE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                      ++T   +  AD ++ + +  +          + +   +   + +  KS+
Sbjct: 63  GPRGSLTARMQEQTEAAIAAADALMFVFDARAGLTPTDRSFADFARRADKPVVLVANKSE 122

Query: 331 --------LYS-TYTEEYDHLISSFTGEGLEELINKIKSILS 363
                   L S          +S+   EG+ +L + ++S++ 
Sbjct: 123 GRHGDAGALESYALGLGDPVGVSAEHDEGMSDLYDALRSVMP 164


>gi|317478951|ref|ZP_07938098.1| small GTP-binding domain-containing protein [Bacteroides sp.
           4_1_36]
 gi|316904928|gb|EFV26735.1| small GTP-binding domain-containing protein [Bacteroides sp.
           4_1_36]
          Length = 396

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 16/171 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V+  PGTT D +T  ++          DT G
Sbjct: 8   NRLHIAVFGRRNSGKSSLVNALTGQDTALVSATPGTTTDPVTKAMEVYPLGPCLFIDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----NIDFIFIGTKSD- 330
             + +  +    ++RT   VE AD+ LLL E +   E  + K      I  I I  K+D 
Sbjct: 68  FDDDEGELGGMRVERTLKTVEKADIALLLYEADGTLEQQWLKLLAAREIPVILILNKADS 127

Query: 331 ---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                           +   ++S+  G G++ + + I   L   F +   +
Sbjct: 128 RQDTASVVLRIEKECGQAPVVVSAKEGTGIQGIFDAILEKLPENFGEQTIT 178


>gi|122702143|emb|CAL88262.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFRKVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|84517346|ref|ZP_01004700.1| GTP-binding protein EngA [Loktanella vestfoldensis SKA53]
 gi|84508826|gb|EAQ05289.1| GTP-binding protein EngA [Loktanella vestfoldensis SKA53]
          Length = 485

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 18/158 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + D+AG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEGRLADLRFTVIDSAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD ++    + T   VE AD+ L + +  +          +I   KN + I    K +
Sbjct: 63  ATDDSLQGRMRRLTERAVEMADVCLFMIDARAGVLPADQVFADILRKKNANVILAANKGE 122

Query: 331 -------LYSTYTEEY--DHLISSFTGEGLEELINKIK 359
                  +   Y         IS+  GEG+ EL++ ++
Sbjct: 123 GRAADNTILEAYALGLGEPIRISAEHGEGMGELMDVLR 160



 Score = 61.0 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 34/196 (17%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-----GYLVK 270
           I    +I ++G  NAGKS+L N +  ++  +     G TRD +++          G  ++
Sbjct: 194 IAKPLQIAVVGRPNAGKSTLINKIIGEERLLTGPEAGITRDAISVKQVWAGPDGIGVPMR 253

Query: 271 ISDTAGIRETDDIV---EKEGIKRTFLEVENA----------------DLIL-------- 303
           I DTAG+R    I    EK  +      V+ A                DL +        
Sbjct: 254 IFDTAGMRRKAKIHEKLEKLSVSDGLRAVKFAEVVVVLLDVEIPFEQQDLRIADLAEREG 313

Query: 304 --LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
             ++  +N        ++       +   L           +S+ TG+GL++L   I   
Sbjct: 314 RAVVIAVNKWDTEDDKQDKLRELRESFERLLPQLRGAPLVTVSAKTGKGLDKLQQAIMRA 373

Query: 362 LSNKFKKLPFSIPSHK 377
                +++  +  +  
Sbjct: 374 HDVWNRRVTTAQLNRW 389


>gi|292806576|gb|ADE42418.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKEQSYAFSSFGMPKSFNISVSHNRGISALIDAILRALN 167


>gi|122702623|emb|CAL88501.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILSALN 167


>gi|122700863|emb|CAL88020.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRDV    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|122700669|emb|CAL87923.1| GTPase [Helicobacter pylori]
 gi|122700699|emb|CAL87938.1| GTPase [Helicobacter pylori]
 gi|122701361|emb|CAL88070.1| GTPase [Helicobacter pylori]
 gi|122701505|emb|CAL88142.1| GTPase [Helicobacter pylori]
 gi|122701511|emb|CAL88145.1| GTPase [Helicobacter pylori]
 gi|122701515|emb|CAL88147.1| GTPase [Helicobacter pylori]
 gi|122701559|emb|CAL88169.1| GTPase [Helicobacter pylori]
 gi|122702591|emb|CAL88485.1| GTPase [Helicobacter pylori]
 gi|122702615|emb|CAL88497.1| GTPase [Helicobacter pylori]
 gi|122702665|emb|CAL88522.1| GTPase [Helicobacter pylori]
 gi|122702867|emb|CAL88623.1| GTPase [Helicobacter pylori]
 gi|122702875|emb|CAL88627.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|242255842|gb|ACS88905.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122701389|emb|CAL88084.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALN 167


>gi|122700597|emb|CAL87887.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRDV    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|268315826|ref|YP_003289545.1| GTP-binding protein Era [Rhodothermus marinus DSM 4252]
 gi|262333360|gb|ACY47157.1| GTP-binding protein Era [Rhodothermus marinus DSM 4252]
          Length = 311

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 81/202 (40%), Gaps = 20/202 (9%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            I   +L    R+GY + I+G  N GKS+L NAL    ++IVT  P TTR  +   L  +
Sbjct: 13  LIDPSQLPPEHRSGY-VAIVGKPNVGKSTLMNALLGHKLSIVTPKPQTTRHRVLGILSGD 71

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLKEINSKK----EISFPKNI 320
            Y +   DT G+ +       E + RT    V +ADL+L + E   K      +    N 
Sbjct: 72  TYQIVFLDTPGVLKKARYKLHEHMLRTVDRAVADADLVLFMAEATQKAPDTISLGHLGNR 131

Query: 321 DFIFIGTKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
             I    K DL                 Y  E    IS+ TG  L+ L+ +I   L    
Sbjct: 132 PAILALNKMDLVRNQEQVLPLVDAYMKQYPFEAVVPISALTGYNLDVLLKEIIHRLPPGP 191

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
              P    S     + +++ +R
Sbjct: 192 PFYPKDQLSEHPERFFVAEIIR 213


>gi|296129768|ref|YP_003637018.1| ribosome-associated GTPase EngA [Cellulomonas flavigena DSM 20109]
 gi|296021583|gb|ADG74819.1| ribosome-associated GTPase EngA [Cellulomonas flavigena DSM 20109]
          Length = 515

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 65/159 (40%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 83  LAVVGRPNVGKSTLVNRILGRREAVVEDNPGVTRDRVSYPAEWSGRRFTLVDTGGWEVDV 142

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSDLYS 333
             ++K   ++  + ++ AD +L + +         ++ +   +      + +  K D  +
Sbjct: 143 AGIDKRVAQQAEVAIDLADAVLFVVDATVGSTDTDEQVVRLLRRSGKPVVLVANKVDGPA 202

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILS 363
              +            H IS+  G G  +L++     L 
Sbjct: 203 VEADAAVLWSLGLGEPHPISALHGRGTGDLLDAAMRALP 241



 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 117/347 (33%), Gaps = 63/347 (18%)

Query: 86  HGGIAVVNGILEE----LAKMPNL---RLANPGEFSRRAFE-------------NGKIDL 125
            G   +VN IL      +   P +   R++ P E+S R F                K   
Sbjct: 91  VGKSTLVNRILGRREAVVEDNPGVTRDRVSYPAEWSGRRFTLVDTGGWEVDVAGIDKRVA 150

Query: 126 LEAESLADLISS------------ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
            +AE   DL  +            +T+ Q    +      +  +  +         + + 
Sbjct: 151 QQAEVAIDLADAVLFVVDATVGSTDTDEQVVRLLRRSGKPVVLVANKVDGPAVEADAAVL 210

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGK 232
             L   E   +     +        L   + +  +       + +G + + ++G  N GK
Sbjct: 211 WSLGLGEPHPISALHGR---GTGDLLDAAMRALPTVSAHATPLPDGPRRVALVGRPNVGK 267

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGI 289
           SSL N +   +  +V D+ GTTRD +   + L G      DTAGIR         +    
Sbjct: 268 SSLLNKVVGSERVVVDDLAGTTRDPVDELVALGGKPWVFVDTAGIRRRVHQTSGADFYAS 327

Query: 290 KRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLYSTYTEEY-- 339
            RT   +E A++ ++L + +   ++++I   +         +    K DL       Y  
Sbjct: 328 LRTQAAIEKAEVAVVLVDASQPMTEQDIRIVQQVIDAGRALVVAYNKWDLMDEDRRPYLE 387

Query: 340 --------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                            +S+ TG   + L+  ++  L +   ++   
Sbjct: 388 REIEQQLVHVQWAPRVNVSARTGWHTDRLVPALERSLDSWDTRISTG 434


>gi|292806670|gb|ADE42465.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|329964947|ref|ZP_08301955.1| hydrogenase maturation GTPase HydF [Bacteroides fluxus YIT 12057]
 gi|328524588|gb|EGF51656.1| hydrogenase maturation GTPase HydF [Bacteroides fluxus YIT 12057]
          Length = 400

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 18/186 (9%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           +   IS  +      N   I + G  N+GKSSL NAL  +D A+V+ IPGTT D +   +
Sbjct: 1   MEKEISGSRTPNA--NRLHIALFGRRNSGKSSLVNALTGQDTALVSSIPGTTTDPVMKAM 58

Query: 263 DLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISF 316
           ++         DT G  + +  +    ++RT   +E  D+ LLL E   ++E     I  
Sbjct: 59  EVHPLGPCLFIDTPGFDDDEGELGGMRVERTLKMMERTDIALLLCEDGGEQEKEWLRILA 118

Query: 317 PKNIDFIFIGTKSDLYS-------TYTEEY---DHLISSFTGEGLEELINKIKSILSNKF 366
            ++I  I +  K+DL++          +EY     + S+  G G+ E+   I   L   F
Sbjct: 119 ARDIPVIPVLNKADLHTDVESLAGQIEKEYGLAPVIASAKEGTGIREIFRAILEKLPPDF 178

Query: 367 KKLPFS 372
                +
Sbjct: 179 GTQTIT 184


>gi|160915033|ref|ZP_02077246.1| hypothetical protein EUBDOL_01041 [Eubacterium dolichum DSM 3991]
 gi|158432832|gb|EDP11121.1| hypothetical protein EUBDOL_01041 [Eubacterium dolichum DSM 3991]
          Length = 298

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 83/204 (40%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ I I+G  NAGKS+L NA+ K+ VAI T  P TTR+ ++  L  E       DT 
Sbjct: 3   YRSGF-IAIVGRPNAGKSTLLNAILKEKVAITTPKPQTTRNNISGILTTEDTQYVFVDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPK----NIDFIFIGT 327
           GI +    + +   K  +  +  AD+   + +         E    K    +I    I  
Sbjct: 62  GIHKPKHELGRTLNKNAYTAISEADVNFWVVDATQPYGSGDEFMLEKMKSAHIPVFLILN 121

Query: 328 KSDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL                        IS+ T + +E L+   +S LS   K  P  + 
Sbjct: 122 KIDLLEKEKLLKVLARWQERMEFAEIFPISALTNDNIEHLLEITRSYLSEGPKYFPDDMI 181

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           S     + +++ +R   +   NE+
Sbjct: 182 SDHGLSFQIAEIIREKVLYKTNEE 205


>gi|122702663|emb|CAL88521.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       +S     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNVSVSHNRGISTLIDAVLNALN 167


>gi|122701641|emb|CAL88210.1| GTPase [Helicobacter pylori]
 gi|122702203|emb|CAL88292.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFSISVSHNRGISALIDAILSALN 167


>gi|122700685|emb|CAL87931.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGINALIDAILSALN 167


>gi|122700663|emb|CAL87920.1| GTPase [Helicobacter pylori]
 gi|122701585|emb|CAL88182.1| GTPase [Helicobacter pylori]
 gi|122701587|emb|CAL88183.1| GTPase [Helicobacter pylori]
 gi|292806594|gb|ADE42427.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806596|gb|ADE42428.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|262091771|gb|ACY25359.1| GTP-binding protein Era [uncultured actinobacterium]
          Length = 653

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+L N    +  AIV D PG TRD +  + +  G    I DT G     
Sbjct: 223 VAILGRPNVGKSTLINRFLGRREAIVEDTPGVTRDRVQYECEWGGRRFIIMDTGGWEAKP 282

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN----SKKEISF----PKNIDFIFIGTKSDLYS 333
           D +  +    + L ++ AD++  + +       + +I            I IG K D   
Sbjct: 283 DGISVQVSAGSELAMQEADVLAFVVDAQVGALDEDDILVQHLRKAKKPTILIGNKVDGER 342

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
              E +            +S+  G G  +L++ I ++L  
Sbjct: 343 EEAEAHGLWSLGLGEPRFVSALHGRGSGDLLDHIVAVLPE 382



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 87/202 (43%), Gaps = 27/202 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + I + + +    +      K+ ++G  N GKSSLFNA+A + ++IV D  GTTRD 
Sbjct: 371 DLLDHIVAVLPEVGRAQNQDGYRKVALIGRPNVGKSSLFNAIAGESLSIVDDAAGTTRDP 430

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SK 311
           +   L   G   +  DTAG+++    D   +     RT   +E  ++ +++ + +   ++
Sbjct: 431 VDSLLSFGGSTWRFIDTAGLKKRANQDSGTDYYASLRTATALERCEVAVVVLDASEPITE 490

Query: 312 KEISF-----PKNIDFIFIGTKSDLYST-----YTEEYDHL-----------ISSFTGEG 350
           +++             + +  K DL           E D             I++ TG  
Sbjct: 491 QDLRVITMVEEAGKAMVIVMNKWDLVDEDRRNQLDREIDRHLDQVEWAQRVNIAAKTGWH 550

Query: 351 LEELINKIKSILSNKFKKLPFS 372
            + L   +++ L +  +++P +
Sbjct: 551 RDRLAPALRTALDSWERRVPTA 572


>gi|206890575|ref|YP_002249177.1| ribosome-associated GTPase EngA [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|238058979|sp|B5YFX9|DER_THEYD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|206742513|gb|ACI21570.1| ribosome-associated GTPase EngA [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 448

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 198 FLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L + I   I   +   + +    KI ++G  N GKS++ NAL  K   IV+ IPGTTRD
Sbjct: 158 ELIDKIIEKIPDTQPVNLEQQNLPKIAVVGRPNVGKSTIINALLGKKRMIVSPIPGTTRD 217

Query: 257 VLTIDLDLEGYLVKISDTAGIRE----TDDIVEKEGIKR-----TFLEVENADLILLLKE 307
            +       G    + DTAGI+       +I ++  ++R         +E AD+ +L+ +
Sbjct: 218 TIDAICTYYGKKYLLIDTAGIKRLSYYKKEISQEIYVERLAYFKALRSIERADVAILVID 277

Query: 308 I--------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
                         I   +    I +  K DL      E D     FT E   +L
Sbjct: 278 ALEGIVNQDQKIAGIVAEQKKGLIILINKWDLIP--ANERDKKAKFFTDEIKHKL 330



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKD---VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + +VI+G  N GKS+LFN + K D    AI    PG TRD+       +     + DT G
Sbjct: 2   FTVVIVGRPNVGKSTLFNRMIKSDEKIKAITDKFPGVTRDINYGVAKWDDKEFIVVDTGG 61

Query: 277 I---RETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFI 325
                + +DI++K+ +++  + + +ADLI+ L +        +I   +       D +++
Sbjct: 62  FFPEEKIEDIIQKQMLEQIEMAISDADLIIHLLDSKEGLLPDDIETARQLRQTGKDILWV 121

Query: 326 GTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
             K D  S  +  YD           IS  TG G +ELI+KI   + +
Sbjct: 122 VNKIDDPSKLSRIYDFYSIGTEELIPISGITGYGFDELIDKIIEKIPD 169


>gi|122702427|emb|CAL88404.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISTLIDAILNALN 167


>gi|122701405|emb|CAL88092.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|149913922|ref|ZP_01902454.1| Small GTP-binding protein domain [Roseobacter sp. AzwK-3b]
 gi|149812206|gb|EDM72037.1| Small GTP-binding protein domain [Roseobacter sp. AzwK-3b]
          Length = 495

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 18/158 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEAKLGDLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ ++    K T   V+ AD+ L L +  +          EI   +    I    K++
Sbjct: 63  ATDESLQGRMRKLTERAVDMADVCLFLIDARAGVTPTDEVLAEILRKRADRVILGANKAE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIK 359
             +     Y+           +S+  GEG+ EL + ++
Sbjct: 123 GSAADAGIYEAYGLGLGEPVRLSAEHGEGMNELYSLLQ 160



 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 29/187 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D +G  V+I DTAG+R+
Sbjct: 207 MQVAVVGRPNAGKSTLINTILGEDRLLTGPEAGITRDAISLQIDWDGLPVRIFDTAGMRK 266

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
                D VEK  +      V+ A+++++L +     E        ++  +    +    K
Sbjct: 267 KARVQDKVEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVVVAVNK 326

Query: 329 SDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D+     ++                      +S+ TG+GL+ L + +        +++P
Sbjct: 327 WDIEDDKQQKLRDLRESFERLLPQLRGAPLVTVSAKTGKGLDRLRDAVAKAYDVWNRRVP 386

Query: 371 FSIPSHK 377
            +  +  
Sbjct: 387 TAQLNRW 393


>gi|122701375|emb|CAL88077.1| GTPase [Helicobacter pylori]
 gi|122701413|emb|CAL88096.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALN 167


>gi|122702275|emb|CAL88328.1| GTPase [Helicobacter pylori]
          Length = 168

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
             + KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 67  AFLSKEIKAFNLKAAQMSDLILYVVDGKLIPSDEDIKLFREVFKINPNCFLVINKIDNDK 126

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 127 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRALN 165


>gi|122701575|emb|CAL88177.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|12322014|gb|AAG51052.1|AC069473_14 GTPase, putative; 34281-30152 [Arabidopsis thaliana]
          Length = 659

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 15/149 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL ++D  IV+ + GTTRD +  +    +G   ++ DTAGIR+ 
Sbjct: 367 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 426

Query: 281 DDI------VEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDFI-----FIG 326
             +       E   + R F  +  +D++ L+ E  +   ++++   + I+        + 
Sbjct: 427 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVVV 486

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            K D      +E          E L  L 
Sbjct: 487 NKWDTIPNKNQETAAHYEDDVREKLRSLK 515



 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 35/158 (22%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-----IVILGHSNAGKSSLFNALAKK 242
                L+  L ++++        + G+ +    K     + I+G  N GKS+LFN L  +
Sbjct: 118 DYATTLSRELKIEDETIEGKETRRKGKRLAKNVKHLLQRVAIVGRPNVGKSALFNRLVGE 177

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI----RETDDIVE---------KEGI 289
           + AIV D PG TRD L            + DT G+    +    ++E          EGI
Sbjct: 178 NRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGVMTVSKSPSGVMEELNVSTTIGMEGI 237

Query: 290 -----------------KRTFLEVENADLILLLKEINS 310
                            K+    V+ + +I+ + +  +
Sbjct: 238 PLSSREAAIARMPSMIEKQATAAVDESAVIIFVVDGQA 275


>gi|86138474|ref|ZP_01057048.1| GTP-binding protein EngA [Roseobacter sp. MED193]
 gi|85824999|gb|EAQ45200.1| GTP-binding protein EngA [Roseobacter sp. MED193]
          Length = 489

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 9/120 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ +E    + T   V+ AD+ L + +  +          EI   K+   I    K++
Sbjct: 63  VTDNSLEGRMRRLTERAVDMADICLFMIDARTGVTPVDEMFAEILRRKSAHVILAANKAE 122



 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 79/187 (42%), Gaps = 29/187 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D  G  ++I DTAG+R+
Sbjct: 204 LQVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQIDWSGTPMRIFDTAGMRK 263

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +   +EK  +      V+ A+++++L +     E        ++  +    +    K
Sbjct: 264 KAKVLEKLEKLSVSDGLRAVKFAEVVVILLDAEIPFEQQDLRIADLAEREGRAVVVAVNK 323

Query: 329 SDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D+     E+                      +S+ TG+GL+ L   +        +++P
Sbjct: 324 WDVEDNKQEKLAALKEAFGRLLPQLRGAPLVTVSAKTGKGLDRLHAAVMRAYDVWNRRIP 383

Query: 371 FSIPSHK 377
            +  +  
Sbjct: 384 TAALNRW 390


>gi|122701409|emb|CAL88094.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALN 167


>gi|122700905|emb|CAL88041.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERTYAFSSFGMPKSFNISVSHNRGISALIDAILNTLN 167


>gi|122700839|emb|CAL88008.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|4467647|emb|CAB37775.1| GTP-binding protein homologue [Helicobacter pylori]
 gi|4467649|emb|CAB37776.1| GTP-binding protein homologue [Helicobacter pylori]
 gi|99905845|gb|ABF68617.1| YphC [Helicobacter pylori]
 gi|99905847|gb|ABF68618.1| YphC [Helicobacter pylori]
 gi|122700649|emb|CAL87913.1| GTPase [Helicobacter pylori]
 gi|122700651|emb|CAL87914.1| GTPase [Helicobacter pylori]
 gi|122700693|emb|CAL87935.1| GTPase [Helicobacter pylori]
 gi|122701359|emb|CAL88069.1| GTPase [Helicobacter pylori]
 gi|122701367|emb|CAL88073.1| GTPase [Helicobacter pylori]
 gi|122701385|emb|CAL88082.1| GTPase [Helicobacter pylori]
 gi|122701489|emb|CAL88134.1| GTPase [Helicobacter pylori]
 gi|122701501|emb|CAL88140.1| GTPase [Helicobacter pylori]
 gi|122701513|emb|CAL88146.1| GTPase [Helicobacter pylori]
 gi|122701521|emb|CAL88150.1| GTPase [Helicobacter pylori]
 gi|122701529|emb|CAL88154.1| GTPase [Helicobacter pylori]
 gi|122701553|emb|CAL88166.1| GTPase [Helicobacter pylori]
 gi|122701569|emb|CAL88174.1| GTPase [Helicobacter pylori]
 gi|122701571|emb|CAL88175.1| GTPase [Helicobacter pylori]
 gi|122702219|emb|CAL88300.1| GTPase [Helicobacter pylori]
 gi|122702607|emb|CAL88493.1| GTPase [Helicobacter pylori]
 gi|122702631|emb|CAL88505.1| GTPase [Helicobacter pylori]
 gi|122702777|emb|CAL88578.1| GTPase [Helicobacter pylori]
 gi|242255852|gb|ACS88910.1| GTPase [Helicobacter pylori]
 gi|242255872|gb|ACS88920.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|167037775|ref|YP_001665353.1| GTP-binding protein Era [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167039985|ref|YP_001662970.1| GTP-binding protein Era [Thermoanaerobacter sp. X514]
 gi|256751969|ref|ZP_05492839.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914075|ref|ZP_07131391.1| GTP-binding protein Era [Thermoanaerobacter sp. X561]
 gi|307724692|ref|YP_003904443.1| GTP-binding protein Era [Thermoanaerobacter sp. X513]
 gi|320116190|ref|YP_004186349.1| GTP-binding protein Era [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|226741400|sp|B0KA54|ERA_THEP3 RecName: Full=GTPase Era
 gi|226741401|sp|B0K708|ERA_THEPX RecName: Full=GTPase Era
 gi|166854225|gb|ABY92634.1| GTP-binding protein Era [Thermoanaerobacter sp. X514]
 gi|166856609|gb|ABY95017.1| GTP-binding protein Era [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256749174|gb|EEU62208.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889010|gb|EFK84156.1| GTP-binding protein Era [Thermoanaerobacter sp. X561]
 gi|307581753|gb|ADN55152.1| GTP-binding protein Era [Thermoanaerobacter sp. X513]
 gi|319929281|gb|ADV79966.1| GTP-binding protein Era [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 302

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKS+L NA+ ++ +AI +  P TTR+ +   L  + Y V   DT GI +  
Sbjct: 8   VALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDLYS 333
             + +  I+     ++  DLIL + E +++        I   K  +   I +  K DL  
Sbjct: 68  SKLSEFMIEVAKRTLKEVDLILYMIEPDTEVGPGDRYIIEHLKEVDTPVILVVNKIDLVP 127

Query: 334 T---------YTEEYDHLI----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     + E+Y+       S+   + ++ L  KI S+L    K       + +   
Sbjct: 128 EKRVEETIKIFKEQYEFKDVVAISAIENKNIDLLKEKIVSLLPEGPKYYLDDYITDQPEK 187

Query: 381 YHLSQTVR 388
             +++ +R
Sbjct: 188 LIVAEIIR 195


>gi|122702759|emb|CAL88569.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSAL 166


>gi|122702485|emb|CAL88433.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRALN 167


>gi|122701595|emb|CAL88187.1| GTPase [Helicobacter pylori]
 gi|122702771|emb|CAL88575.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSAL 166


>gi|122700847|emb|CAL88012.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|30682040|ref|NP_187815.2| emb2738 (embryo defective 2738); GTP binding [Arabidopsis thaliana]
 gi|209529777|gb|ACI49783.1| At3g12080 [Arabidopsis thaliana]
 gi|332641625|gb|AEE75146.1| GTP-binding protein [Arabidopsis thaliana]
          Length = 663

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 15/149 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL ++D  IV+ + GTTRD +  +    +G   ++ DTAGIR+ 
Sbjct: 371 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 430

Query: 281 DDI------VEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDFI-----FIG 326
             +       E   + R F  +  +D++ L+ E  +   ++++   + I+        + 
Sbjct: 431 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVVV 490

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            K D      +E          E L  L 
Sbjct: 491 NKWDTIPNKNQETAAHYEDDVREKLRSLK 519



 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 30/120 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           ++ I+G  N GKS+LFN L  ++ AIV D PG TRD L            + DT G+   
Sbjct: 160 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGVMTV 219

Query: 278 -RETDDIVE---------KEGI-----------------KRTFLEVENADLILLLKEINS 310
            +    ++E          EGI                 K+    V+ + +I+ + +  +
Sbjct: 220 SKSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVDGQA 279


>gi|299115668|emb|CBN75868.1| MEngA, mitochondrial EngA GTPase [Ectocarpus siliculosus]
          Length = 629

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 15/137 (10%)

Query: 203 ISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           + + + +  L    R G +++VI+G  N GKS+L+N LA ++ AIVT I GTTRD     
Sbjct: 96  LQALVKRPPLSAPARGGAFRVVIVGRPNVGKSTLYNRLATRNRAIVTPIAGTTRDRKEST 155

Query: 262 LDLEGYLVKISDTAGIRETDDIVEK------------EGIKRTFLEVENADLILLLKEIN 309
           + L G     +DT G+ +  D   K              +K+T   +E++D++L + +  
Sbjct: 156 VSLGGMTFDFADTGGLEDGADEPWKGPPGTPHPGMPQVVLKKTEEAIEDSDIVLFMVD-- 213

Query: 310 SKKEISFPKNIDFIFIG 326
           +++ ++        ++ 
Sbjct: 214 ARQGVTEADRHYARWVR 230



 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 14/134 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  N GKSSL NA+ ++D A+    PG TRD + ++    G  V++ DTAGIR+
Sbjct: 322 VQLALVGRPNVGKSSLLNAVLREDRALTGPTPGLTRDAVAVEWTWGGKAVRLVDTAGIRK 381

Query: 280 -----TDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISFP-----KNIDFIFI 325
                T   +E+  +K +   +  A +++L+ + +     K E+S       +    +  
Sbjct: 382 SGSRDTTTPLEELAVKDSMNAIHKAQVVVLVLDGSEGMLRKTELSIASMVATEGRALVVA 441

Query: 326 GTKSDLYSTYTEEY 339
             KSDL      EY
Sbjct: 442 ANKSDLSGVSPGEY 455


>gi|296282892|ref|ZP_06860890.1| GTP-binding protein EngA [Citromicrobium bathyomarinum JL354]
          Length = 464

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 18/169 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +++I+G  N GKS+LFN LA K +A+V D PG TRD    D+ L G    I DTAG  + 
Sbjct: 4   RVIIIGRPNVGKSTLFNRLAGKKLALVDDQPGVTRDRRFGDVTLAGMRFTIVDTAGWEDE 63

Query: 281 DDIVE-KEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDL 331
           D          +T + + +AD +L + +  +       EI       ++  I +  K++ 
Sbjct: 64  DPSTLPGRMRMQTEVSIADADAVLFVVDARAGLTPLDNEIGNWLRTADVPVIVVANKAEG 123

Query: 332 YSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            S     ++           IS+  GEG  +L   +  I+  K +    
Sbjct: 124 RSGDAGIFEAYSLGLGEPIGISAEHGEGTADLFEALWPIIGEKSEAGDA 172



 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 40/218 (18%)

Query: 200 KNDISSHISQGKLGEIIRNG-----YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           K++    +     GE   +G      K+ I+G  NAGKS+L N +  +D  +     G T
Sbjct: 166 KSEAGDALEAMDEGEEDEDGVPTGPLKLAIVGRPNAGKSTLINRMLGEDRLLTGPEAGIT 225

Query: 255 RDVLTIDLDL------EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLL 305
           RD + ID +       +   V++ DTAG+R+  ++V   EK  +      V+ A++++L+
Sbjct: 226 RDSIAIDWEWTDPDSGDTREVRLIDTAGMRKKRNVVEKLEKLSVADARRAVDFAEVVVLM 285

Query: 306 KEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEEYD----------------- 340
            +     E        ++  +    +    K D+ +  ++ ++                 
Sbjct: 286 LDATKGLEHQDLKIASLAIEEGRALMIAINKWDVAAEPSKLFNGIRFALDEGLAQVRGLP 345

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
              +S+ TG+GL++LI     +     K++  S  +  
Sbjct: 346 LIAVSAKTGKGLDQLIAAAFQLRETWSKRVSTSALNRW 383


>gi|242255844|gb|ACS88906.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKVLNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILNALN 167


>gi|122700785|emb|CAL87981.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I  +L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVLN 167


>gi|122702655|emb|CAL88517.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISVLIDAILSALN 167


>gi|122702869|emb|CAL88624.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE        V+ +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAVQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I + L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNAL 166


>gi|122701689|emb|CAL88234.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILSALN 167


>gi|122701563|emb|CAL88171.1| GTPase [Helicobacter pylori]
 gi|122702643|emb|CAL88511.1| GTPase [Helicobacter pylori]
 gi|122702877|emb|CAL88628.1| GTPase [Helicobacter pylori]
 gi|242255820|gb|ACS88894.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122702229|emb|CAL88305.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122700841|emb|CAL88009.1| GTPase [Helicobacter pylori]
 gi|122701461|emb|CAL88120.1| GTPase [Helicobacter pylori]
 gi|122702239|emb|CAL88310.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|262371654|ref|ZP_06064933.1| ribosome-associated GTPase EngA [Acinetobacter junii SH205]
 gi|262311679|gb|EEY92764.1| ribosome-associated GTPase EngA [Acinetobacter junii SH205]
          Length = 469

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 112/278 (40%), Gaps = 38/278 (13%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 73  EQSKTAIHEADIIIFVVDARAGLLASDEQIARELRTL-GKKVYLVANKVDGVHAEAALVE 131

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAG 231
              L   E   V     + V   +  +  ++          E  +N G ++ I+G  N G
Sbjct: 132 FYKLGMGEPMQVAASHGRGVQQMLEEVLAEVP---EDENPEEHNKNTGLRLAIIGRPNVG 188

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KS+L N L  ++  +  D PGTTRD + I  + +G    + DTAG+R     D+++EK  
Sbjct: 189 KSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVRRKGKVDEMIEKFS 248

Query: 289 IKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEEY- 339
           I +T   +++A +++++ +      ++++     +       +    K D  + Y  +  
Sbjct: 249 IVKTLQAMKDAHVVVVVVDAREGIVEQDLHLIGYALEAGRAMVIAINKWDNMTEYDRKQC 308

Query: 340 ---------------DHLISSFTGEGLEELINKIKSIL 362
                           HLIS+  G G+ EL   I    
Sbjct: 309 KLDVERRFDFIPWAKIHLISALHGTGVGELYPSIHRAY 346



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E +
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFIVVDTGGIGENE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD--- 330
             ++    +++   +  AD+I+ + +  +    S  +              +  K D   
Sbjct: 65  GGIDSYMAEQSKTAIHEADIIIFVVDARAGLLASDEQIARELRTLGKKVYLVANKVDGVH 124

Query: 331 ----LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLP 370
               L   Y       +  ++  G G+++++ ++ + +        
Sbjct: 125 AEAALVEFYKLGMGEPMQVAASHGRGVQQMLEEVLAEVPEDENPEE 170


>gi|224535653|ref|ZP_03676192.1| hypothetical protein BACCELL_00517 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522726|gb|EEF91831.1| hypothetical protein BACCELL_00517 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 407

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D  IV+  PGTT D +T  +++       + DT G
Sbjct: 22  NRLHIALFGRRNSGKSSLVNALTGQDTVIVSPTPGTTTDPVTKAMEIHPLGPCLLIDTPG 81

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSDL 331
             +  ++ E   ++RT   +   D+ LLL E    +E  +      + I  I +  K+D 
Sbjct: 82  FDDEGELGEMR-VERTLKIIGKTDIALLLCETGDAQEQEWLQRLKERGIPVILLLNKADA 140

Query: 332 YSTYTE----------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               TE          +   ++S+  G G+E +   I   L   F +   +
Sbjct: 141 RPNTTELAEQIKASCGQPPIIVSAKDGTGIEAIHRAILEKLPADFGEQTIT 191


>gi|217967705|ref|YP_002353211.1| GTP-binding protein Era [Dictyoglomus turgidum DSM 6724]
 gi|217336804|gb|ACK42597.1| GTP-binding protein Era [Dictyoglomus turgidum DSM 6724]
          Length = 298

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKS+L N L  + V+IV D P TTR  +   L LE       DT G     
Sbjct: 10  ISIVGKPNAGKSTLINLLVGEKVSIVADKPQTTRQRILGVLTLEDAQFIFLDTPGWFPPK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNI--DFIFIGTKSDLYS 333
            ++ +   K     +E++D++L + +       +++  + F K+    ++ +  K D+ S
Sbjct: 70  HLLGEYMQKTIKKTIEDSDIVLYVIDSSVELDDDNRTLLKFVKDQGKPYLVLLNKIDMVS 129

Query: 334 T--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           +               +EE    IS+  G   E LI K+K I        P  + + +  
Sbjct: 130 SKSIEERKKEVIALGVSEEKIIEISALYGTNKELLIEKLKEIAPEGEFLYPPDMLTDQTD 189

Query: 380 LYHLSQTVR 388
            + +++ +R
Sbjct: 190 KFFIAEIIR 198


>gi|122701495|emb|CAL88137.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGVAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLN 167


>gi|122700643|emb|CAL87910.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGAPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|292806688|gb|ADE42474.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|292806550|gb|ADE42405.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806552|gb|ADE42406.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I ++L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNVL 166


>gi|122702593|emb|CAL88486.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSTLN 167


>gi|122702127|emb|CAL88254.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122700697|emb|CAL87937.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNSNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKDRAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|9294105|dbj|BAB01956.1| GTP-binding protein-like [Arabidopsis thaliana]
          Length = 537

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 15/149 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL ++D  IV+ + GTTRD +  +    +G   ++ DTAGIR+ 
Sbjct: 245 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 304

Query: 281 DDI------VEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDFI-----FIG 326
             +       E   + R F  +  +D++ L+ E  +   ++++   + I+        + 
Sbjct: 305 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVVV 364

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            K D      +E          E L  L 
Sbjct: 365 NKWDTIPNKNQETAAHYEDDVREKLRSLK 393



 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 41/163 (25%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E+E ++   ++     +      I  H+ Q           ++ I+G  N GKS+LFN
Sbjct: 2   FPEDETIEGKETRRKGKRLAKNTQQIPEHLLQ-----------RVAIVGRPNVGKSALFN 50

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI----RETDDIVE-------- 285
            L  ++ AIV D PG TRD L            + DT G+    +    ++E        
Sbjct: 51  RLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGVMTVSKSPSGVMEELNVSTTI 110

Query: 286 -KEGI-----------------KRTFLEVENADLILLLKEINS 310
             EGI                 K+    V+ + +I+ + +  +
Sbjct: 111 GMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVDGQA 153


>gi|292806548|gb|ADE42404.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|122702739|emb|CAL88559.1| GTPase [Helicobacter pylori]
 gi|292806494|gb|ADE42377.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|122702207|emb|CAL88294.1| GTPase [Helicobacter pylori]
 gi|122702209|emb|CAL88295.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + +
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-E 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAILNALN 167


>gi|271964501|ref|YP_003338697.1| GTP-binding protein [Streptosporangium roseum DSM 43021]
 gi|270507676|gb|ACZ85954.1| GTP-binding protein [Streptosporangium roseum DSM 43021]
          Length = 472

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 84/204 (41%), Gaps = 29/204 (14%)

Query: 198 FLKNDISSHISQGKLGE--IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L + I   + +       + R   ++ ++G  N GKSSL N LA ++  +V  + GTTR
Sbjct: 184 DLLDVILDKLPETPQQRFGVERGPRRVALVGKPNVGKSSLLNKLAGEERVLVDPMAGTTR 243

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINS-- 310
           D +   + L G   +  DTAGIR  D      +     RT   +E +++ ++L + +   
Sbjct: 244 DPVDELIQLGGKTWRFVDTAGIRRRDRELKGADFYASMRTRGALERSEIAVVLIDASDVL 303

Query: 311 -KKEIS-----FPKNIDFIFIGTKSDLYST-----YTEEYD-----------HLISSFTG 348
            ++++             +    K DL          +E D             IS+ TG
Sbjct: 304 TEQDLRIISLVIESGRAMVVAFNKWDLLDEDRRYYLEKEIDRQLVRVPWALRVNISAKTG 363

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
             +E L+  I+  L +   ++P +
Sbjct: 364 WHVERLVPAIEKALDSWSTRVPTA 387



 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 77/200 (38%), Gaps = 19/200 (9%)

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
            + +E    I     D+ +  S  + G+       + ++G  N GKS+L N +  +  A+
Sbjct: 1   MTGEEDSGWIEAELADLGTEDSSEEAGQDSGPQPVVAVVGRPNVGKSTLVNRIIGRREAV 60

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           V D+PG TRD +T D    G    + DT G       +  +  ++  +  E AD+IL + 
Sbjct: 61  VEDVPGVTRDRVTYDATWRGRRFTVVDTGGWDPDATGMALKIAEQAQVAAELADVILFVV 120

Query: 307 E----INSKKEI----SFPKNIDFIFIGTKSD----------LYSTYTEEYDHLISSFTG 348
           +    +    EI            I    K D          L++    E    +S+  G
Sbjct: 121 DAVVGVTDADEIVGHVLRGSGKPVILAANKVDNQQMELEAAGLWALGLGE-PQPVSALHG 179

Query: 349 EGLEELINKIKSILSNKFKK 368
               +L++ I   L    ++
Sbjct: 180 RSSGDLLDVILDKLPETPQQ 199


>gi|122702407|emb|CAL88394.1| GTPase [Helicobacter pylori]
          Length = 168

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
             + KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 67  AFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 126

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 127 EKEQTYAFSSFGMPKSFNISVSHNRGISVLIDAILHAL 164


>gi|292806528|gb|ADE42394.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I ++L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNVLN 167


>gi|122702865|emb|CAL88622.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA+  +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARGRIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|122700655|emb|CAL87916.1| GTPase [Helicobacter pylori]
 gi|122702851|emb|CAL88615.1| GTPase [Helicobacter pylori]
 gi|122702855|emb|CAL88617.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLN 167


>gi|255325638|ref|ZP_05366735.1| ribosome-associated GTPase EngA [Corynebacterium tuberculostearicum
           SK141]
 gi|255297248|gb|EET76568.1| ribosome-associated GTPase EngA [Corynebacterium tuberculostearicum
           SK141]
          Length = 526

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 17/176 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N    +  A+V D PG TRD ++   D  G    + DT G     
Sbjct: 93  VAIVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRISYVADWNGQRFLVQDTGGWDPNV 152

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
             +     ++  + +E AD+I+++ +    I +  E+   +     +  I +  K D  +
Sbjct: 153 KGIHGAIARQAEVAMETADVIVMVVDTKVGITATDEVMARRLQKSPVPVILVSNKFDSDN 212

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            Y +  +           +S+  G G  +++++I  +   + ++   +    +  L
Sbjct: 213 QYADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRVFPEEPRQTAITSGPRRVAL 268



 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 87/233 (37%), Gaps = 33/233 (14%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
               S +       + ++I     +      I +G + + ++G  N GKSSL N L  ++
Sbjct: 228 PWPVSAQHGRGGADVLDEILRVFPEEPRQTAITSGPRRVALVGKPNVGKSSLLNKLTSEE 287

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENAD 300
            ++V ++ GTT D +   + L+  L K  DTAG+R+        E     RT   ++ A+
Sbjct: 288 RSVVDNVAGTTVDPVDSLVQLDEQLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAE 347

Query: 301 LILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST-----YTEEYDHLISSF- 346
           + ++L + + +          +        +    K DL           E D  +S   
Sbjct: 348 VCIMLIDASEEISEQDQRVLNMVLEAGKALVIAFNKWDLMDEDRRYYLDREIDQQLSHLP 407

Query: 347 ----------TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                     TG  L++L   +   L +  +++     ++      L + +  
Sbjct: 408 WVTRVNISAETGRALQKLEPAMIEALESWDQRVSTGQLNNW-----LREAIAA 455


>gi|122702147|emb|CAL88264.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I  +L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVLN 167


>gi|99905863|gb|ABF68626.1| YphC [Helicobacter pylori]
 gi|122702231|emb|CAL88306.1| GTPase [Helicobacter pylori]
 gi|242255926|gb|ACS88947.1| GTPase [Helicobacter pylori]
 gi|292806516|gb|ADE42388.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166


>gi|83954198|ref|ZP_00962918.1| GTP-binding protein EngA [Sulfitobacter sp. NAS-14.1]
 gi|83841235|gb|EAP80405.1| GTP-binding protein EngA [Sulfitobacter sp. NAS-14.1]
          Length = 491

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 18/173 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLADLRFTVVDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD ++    + T   V+ AD+ L + +             +I   K+   I    K++
Sbjct: 63  VTDDSLQGRMRRLTERAVDMADICLFMIDARVGVTPSDLVFADILRKKSAHVILAANKAE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +      +           +S+  GEGL +L   +  I     ++     P
Sbjct: 123 GKAADAGVIEAYSLGLGEPIRLSAEHGEGLNDLYTHLMPIADGFAERAQTDAP 175



 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 31/196 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N +  +D  +     G TRD +++  D     ++I DTAG+R+
Sbjct: 204 LQVAVVGRPNAGKSTLINQIMGEDRLLTGPEAGITRDAISLQTDWFDVPMRIFDTAGMRK 263

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      V+ A+++++L + +   E        ++  +    +    K
Sbjct: 264 RAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDADIPFEQQDLRIADLAEREGRAVVVAVNK 323

Query: 329 SD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D                  L           +S+ TG G++ L N I        +++ 
Sbjct: 324 WDLETDKQGKLKDLRESFERLLPQLKGAPLVTVSAKTGRGMDRLHNAIMRAYEVWNRRV- 382

Query: 371 FSIPSHKRHLYHLSQT 386
            +     R L  + + 
Sbjct: 383 -TTAQLNRWLSGMIEA 397


>gi|195954205|gb|ACG58808.1| YphC [Helicobacter pylori]
 gi|195954207|gb|ACG58809.1| YphC [Helicobacter pylori]
 gi|195954223|gb|ACG58817.1| YphC [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNTLN 167


>gi|217976948|ref|YP_002361095.1| GTP-binding protein EngA [Methylocella silvestris BL2]
 gi|217502324|gb|ACK49733.1| small GTP-binding protein [Methylocella silvestris BL2]
          Length = 467

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 18/166 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I I+G  N GKS+LFN L  K +A+V D PG TRD    +  L   + KI DTAG+ E
Sbjct: 2   FTIAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGEARLGDLVFKIIDTAGLEE 61

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                       +T   +E+AD +  L +              +    +   I I  K++
Sbjct: 62  GAAASLSGRMRAQTERAIESADAVFFLFDARLGLTPDDRFFANLVRRADKPLILIANKAE 121

Query: 331 --LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFK 367
             +      E           +S+  G+G+ +L + I+  L  + +
Sbjct: 122 GRIGEAGAREGYDLGLGDPVPLSAEHGDGMSDLYSAIREALPEQTE 167



 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 30/196 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            +I I+G  NAGKS+L N +  +D  +    PG TRD + ID +  G  +K+ DTAG+R 
Sbjct: 196 LRIAIIGRPNAGKSTLLNTIIGQDRLLTGPEPGLTRDTIGIDFEWGGRKIKMFDTAGLRR 255

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
             + +D +EK          + A++ +LL +      K++++       +    +    K
Sbjct: 256 RAKVEDKLEKLAGHDAVRAAKFAEVAVLLLDATIPFEKQDLTLADLVEREGRALVIGVNK 315

Query: 329 SDLYS------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL                             +S  TG+G+ +L+  I  +     K++ 
Sbjct: 316 WDLIEHRGAKLSELREEAIRLLPQVKGAPVVPLSGATGDGVGKLMEAIFRVHEVWNKRIS 375

Query: 371 FSIPSHKRHLYHLSQT 386
            +   ++     L Q+
Sbjct: 376 TARL-NRWLAGALEQS 390


>gi|148240062|ref|YP_001225449.1| GTP-binding protein Era [Synechococcus sp. WH 7803]
 gi|147848601|emb|CAK24152.1| GTP-binding protein era homolog [Synechococcus sp. WH 7803]
          Length = 312

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 83/215 (38%), Gaps = 24/215 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L    VAI + +  TTR+ L   L  +   + + DT G
Sbjct: 11  RSGF-VALIGRPNVGKSTLVNQLVGDKVAITSPVAQTTRNRLRAILTTDEAQLILVDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
           I +   ++ +  ++     +   D +LLL E              +   + +    +  K
Sbjct: 70  IHKPHHLLGERLVQSARSAIGEVDQVLLLLEGCEPPGRGDAFIVNLLRQQRLPVQVVLNK 129

Query: 329 SDLYSTYTEE---------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            D   T                     H   + TGEG  EL+  + +++    +  P  +
Sbjct: 130 WDQVPTAQRPEADAAYRDLLAESGWPIHHCCALTGEGCPELVQAVSALMPEGPQLYPPEM 189

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            S +     +++ +R   +    E+      ++ +
Sbjct: 190 VSDQPERLLMAELIREQVLLLTREEVPHSVAVSID 224


>gi|122702837|emb|CAL88608.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|254466194|ref|ZP_05079605.1| GTP-binding protein EngA [Rhodobacterales bacterium Y4I]
 gi|206687102|gb|EDZ47584.1| GTP-binding protein EngA [Rhodobacterales bacterium Y4I]
          Length = 487

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 9/120 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ +E    + T   V+ AD+ L + +  +          +I   K+   I    K++
Sbjct: 63  ATDNSLEGRMRRLTERAVDMADICLFMIDARTGVTPTDEIFADILRRKSAHVILAANKAE 122



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 79/187 (42%), Gaps = 29/187 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N +  ++  +     G TRD +++ ++  G  +++ DTAG+R+
Sbjct: 202 LQVAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLKINWNGVPMRVFDTAGMRK 261

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      V+ A+++++L + +   E        ++  +    +    K
Sbjct: 262 KAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDASIPFEQQDLRIADLAEREGRAVVVAVNK 321

Query: 329 SD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D                  L           +S+ TG+GL+ L + I    +   +++P
Sbjct: 322 WDAEEHKQDKLRDLKEAFGRLLPQLRGAPLVTVSAKTGKGLDRLQDAIMRAYATWNRRVP 381

Query: 371 FSIPSHK 377
            +  +  
Sbjct: 382 TAALNRW 388


>gi|122702647|emb|CAL88513.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSAL 166


>gi|21220251|ref|NP_626030.1| GTP-binding protein EngA [Streptomyces coelicolor A3(2)]
 gi|256788632|ref|ZP_05527063.1| GTP-binding protein EngA [Streptomyces lividans TK24]
 gi|289772527|ref|ZP_06531905.1| ribosome-associated GTPase EngA [Streptomyces lividans TK24]
 gi|10799853|emb|CAC12931.1| putative GTP binding protein [Streptomyces coelicolor A3(2)]
 gi|289702726|gb|EFD70155.1| ribosome-associated GTPase EngA [Streptomyces lividans TK24]
          Length = 492

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 23/230 (10%)

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A+ D     D +     E+  +  F   D+   I +   G +      + ++G  N GKS
Sbjct: 12  AEHDHGALGDAEYAQFMELAAEEGFDIEDVEGAIEEAGHGPL----PVLAVVGRPNVGKS 67

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           +L N +  +  A+V D PG TRD +T + +  G   K+ DT G  +    ++     +  
Sbjct: 68  TLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDVLGIDASVAAQAE 127

Query: 294 LEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD----------LYSTY 335
             +E AD ++ + +          +   +        +    K D          L+S  
Sbjct: 128 YAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGPSGEADASYLWSLG 187

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             E    +S+  G G  ++++++   L     +   +     R +  + +
Sbjct: 188 LGE-PQPVSALHGRGTGDMLDRVLEALPEAPAQTFGTAVGGPRRIALIGR 236



 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N +A +D  +V ++ GTTRD +   ++L G   K  DTAGIR+ 
Sbjct: 230 RIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRKR 289

Query: 281 DDIVE---KEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKS 329
             + +        RT   VE A++ ++L + +    +        +       +    K 
Sbjct: 290 VHLQQGADYYASLRTAAAVEKAEVAVILVDASESISVQDQRIVTMAVEAGRAIVVAYNKW 349

Query: 330 D---------LYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D         L      E           +S+ TG  +E+L+  I++ L+    ++P  
Sbjct: 350 DTLDEERRYYLEREIETELGQVAWAPRVNVSAQTGRHMEKLVPAIETALAGWETRVPTG 408


>gi|317453521|emb|CBL87870.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERVYAFSSFGIPKSFNISVSHNRGISALIDAILNTLN 167


>gi|297195224|ref|ZP_06912622.1| GTP-binding protein engA [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297152707|gb|EFH31948.1| GTP-binding protein engA [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 494

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 83/226 (36%), Gaps = 21/226 (9%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D     D +     E+  +  F   D+   I +   G +      + ++G  N GKS+L 
Sbjct: 18  DHGALGDAEYAEFMELAAEEGFDVEDVEGAIEEAGHGPL----PVLAVVGRPNVGKSTLV 73

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N +  +  A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +
Sbjct: 74  NRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDVLGIDASVAAQAEYAI 133

Query: 297 ENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTE---------EY 339
           E AD ++ + +          +  ++        +    K D  S   +           
Sbjct: 134 EAADAVVFVVDSTVGATDTDEAVVKLLRRAGKPVVLCANKVDGPSGEADATALWSLGLGQ 193

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
            H +SS  G G  ++++ +   L     +   +     R +  + +
Sbjct: 194 PHPVSSLHGRGTGDMLDAVLEALPEAPAQTFGTAVGGPRRIALIGR 239



 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N +A+++  +V ++ GTTRD +   ++L G   K  DTAGIR+ 
Sbjct: 233 RIALIGRPNVGKSSLLNKVAREERVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRKR 292

Query: 281 DDIVE---KEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKS 329
             + +        RT   VE A++ ++L +      +        +       +    K 
Sbjct: 293 VHLQQGADYYASLRTAAAVEKAEVAVILIDATENISVQDQRIITMAVEAGRAIVVAYNKW 352

Query: 330 D---------LYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D         L      E           +S+ TG  +E+L+  I++ L+    ++P  
Sbjct: 353 DDLDEERRYYLEREIETEMQQVAWAPRVNVSALTGRHMEKLVPAIETALAGWETRVPTG 411


>gi|122701481|emb|CAL88130.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|122700653|emb|CAL87915.1| GTPase [Helicobacter pylori]
 gi|122700671|emb|CAL87924.1| GTPase [Helicobacter pylori]
 gi|122701499|emb|CAL88139.1| GTPase [Helicobacter pylori]
 gi|122701605|emb|CAL88192.1| GTPase [Helicobacter pylori]
 gi|122701609|emb|CAL88194.1| GTPase [Helicobacter pylori]
 gi|242255850|gb|ACS88909.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|297829768|ref|XP_002882766.1| EMB2738 [Arabidopsis lyrata subsp. lyrata]
 gi|297328606|gb|EFH59025.1| EMB2738 [Arabidopsis lyrata subsp. lyrata]
          Length = 661

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 15/149 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL ++D  IV+ + GTTRD +  +    +G   ++ DTAGIR+ 
Sbjct: 369 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 428

Query: 281 DDI------VEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDFI-----FIG 326
             +       E   + R F  +  +D++ L+ E  +   ++++   + I+        + 
Sbjct: 429 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVVV 488

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            K D      +E          E L  L 
Sbjct: 489 NKWDTIPNKNQETAAHYEDDVREKLRSLK 517



 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 41/177 (23%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
            +    + I +     E+E ++   ++     +      I  H+ Q           ++ 
Sbjct: 112 DIVRDYATILSRELKLEDETIEGKETRRKGKRLAKNTQQIPEHLLQ-----------RVA 160

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI------ 277
           I+G  N GKS+LFN L  ++ AIV D PG TRD L            + DT G+      
Sbjct: 161 IVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGVMTVSKS 220

Query: 278 -----------------------RETDDIVEKEGI-KRTFLEVENADLILLLKEINS 310
                                  RE         I K+    V+ + +I+ + +  +
Sbjct: 221 PSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVDGQA 277


>gi|297198669|ref|ZP_06916066.1| ribosome-associated GTPase EngA [Streptomyces sviceus ATCC 29083]
 gi|297147167|gb|EDY58617.2| ribosome-associated GTPase EngA [Streptomyces sviceus ATCC 29083]
          Length = 492

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 21/226 (9%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D     D +     E+  +  F   D+   I     G +      + ++G  N GKS+L 
Sbjct: 15  DHGALGDAEYAEFMELAAEEGFDPEDVEGAIEAAGHGPL----PVLAVVGRPNVGKSTLV 70

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N +  +  A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +
Sbjct: 71  NRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDVLGIDASVAAQAEYAI 130

Query: 297 ENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------- 339
           E AD ++ + +          +   +        +    K D  S  ++           
Sbjct: 131 EAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLAANKVDGLSGESDAAYLWSLGLGE 190

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
            H +S+  G G  ++++ +   L    ++   +     R +  + +
Sbjct: 191 PHPVSALHGRGTGDMLDAVLEALPEAPQQTFGTAIGGPRRIALIGR 236



 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 31/281 (11%)

Query: 123 IDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
             +  A+++  ++ ++        ++  +  +         +K+  +    +A   +S  
Sbjct: 128 YAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLAANKVDGLSGESDAAYLWSLG 187

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKL---GEIIRNGYKIVILGHSNAGKSSLFNA 238
               +  S         + + +   + +      G  I    +I ++G  N GKSSL N 
Sbjct: 188 LGEPHPVSALHGRGTGDMLDAVLEALPEAPQQTFGTAIGGPRRIALIGRPNVGKSSLLNK 247

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLE 295
           +A ++  +V ++ GTTRD +   ++L G   K  DTAGIR+   + +        RT   
Sbjct: 248 VAGEERVVVNEMAGTTRDPVDELIELGGVTWKFVDTAGIRKRVHLQQGADYYASLRTAAA 307

Query: 296 VENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSD---------LYSTYTEE 338
           VE A++ ++L + +    +        +       +    K D         L      E
Sbjct: 308 VEKAEVAVILIDGSESISVQDQRIVTMAVEAGRAIVLAYNKWDTLDEERRYYLEREIETE 367

Query: 339 YDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                      +S+ TG  +E+L+  I++ L+    ++P  
Sbjct: 368 LGQVAWAPRVNVSAKTGRHMEKLVPAIETALAGWETRVPTG 408


>gi|292806640|gb|ADE42450.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERTYAFSSFGIPKSFNISVSHNRGISALIDAILSALN 167


>gi|122702859|emb|CAL88619.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKVNSNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122702433|emb|CAL88407.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAILNALN 167


>gi|122702463|emb|CAL88422.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|122700719|emb|CAL87948.1| GTPase [Helicobacter pylori]
 gi|292806668|gb|ADE42464.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806676|gb|ADE42468.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|15604520|ref|NP_221038.1| GTP-binding protein EngA [Rickettsia prowazekii str. Madrid E]
 gi|8928120|sp|Q9ZCP6|DER_RICPR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|3861214|emb|CAA15114.1| unknown [Rickettsia prowazekii]
 gi|292572309|gb|ADE30224.1| GTP-binding protein [Rickettsia prowazekii Rp22]
          Length = 447

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 15/156 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV D+PG TRD    D  +  +   + DT G+ E  
Sbjct: 6   ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLEENP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTKSDLYS 333
           D + +  + +T   +  ADLI  + +  S     +          N   I +  K +   
Sbjct: 66  DNMGERLMGQTTQAILEADLICFMVDGKSGVLPDDKLLSNFVRKYNKHCILVVNKCEKAF 125

Query: 334 TYTEEY-------DHLISSFTGEGLEELINKIKSIL 362
            + +EY         +IS+  G GL +L + I S L
Sbjct: 126 DFDKEYYKLGFDSIVIISAEHGIGLIDLYDAIISKL 161



 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 35/210 (16%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           + +   L ++  I  +I+    G+ ++    IV+ G  NAGKS+  NA+   +  +    
Sbjct: 155 DAIISKLSVEESIERNIADPFRGDCLQ----IVVSGRPNAGKSTFINAIINDERLLTGPE 210

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKE 307
            G TR+ + +D   +   +K+ DTAG+R+       +EK     T   ++ A+ ++L+ +
Sbjct: 211 AGITRESIEVDWQYKNTHIKLIDTAGLRKKSTITASLEKLSTSDTINSIKFANTVILMID 270

Query: 308 I-----NSKKEIS---FPKNIDFIFIGTKSDLYSTYTEEYDH------------------ 341
                      I+     +    I +  K DL     +E                     
Sbjct: 271 ALAHVKQQDFNIASHIVNEGRSIIIVVNKWDLVKESEKEAFQKEFYYQINTHLPQIKGVP 330

Query: 342 --LISSFTGEGLEELINKIKSILSNKFKKL 369
              IS+   + +E++++    I     KK+
Sbjct: 331 VLFISAINKQNIEQVLDACLKIYKIWNKKI 360


>gi|330723544|gb|AEC45914.1| GTP-binding protein Der [Mycoplasma hyorhinis MCLD]
          Length = 433

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 15/167 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L  K V+I+ D PG TRD +   ++  G    + DT GI   +
Sbjct: 5   VALIGKPNVGKSTLFNKLVGKKVSIIHDSPGVTRDRIYSKVEWAGKEFYLIDTGGIEIEN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKK----EISFPKNIDFIFIGTKSD--- 330
              +++   +T + +E A+LI+ L +    I+S      ++    +   +    K +   
Sbjct: 65  KSFQEQIRIQTQIAIEEANLIIFLVDGRVEIDSDDHFVIDLLRKSSKKVLIAANKLEGNK 124

Query: 331 ----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                  +   E+   IS+  GEG+ +L+++    L    +K   + 
Sbjct: 125 FFDTSIYSLGFEHIFPISAIHGEGVGDLLDETIRSLDFTKEKENEAF 171



 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 31/193 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++    +   K  E     +++ I+G  NAGKS+L N LA ++ +IV+ I GTTRD 
Sbjct: 151 DLLDETIRSLDFTKEKE--NEAFRLAIIGKPNAGKSTLLNKLANENRSIVSPIAGTTRDS 208

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINSK--- 311
           ++  + ++    +I DTAGI     I +      + R F  +++A L L+L +   +   
Sbjct: 209 VSSFIKIDKIDFEIIDTAGIIRKSKIAQSVDFYALLRAFNSLDDAQLSLILIDATQELSH 268

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
                   +F K    I +  K DL    T                        IS+ TG
Sbjct: 269 FDARLAGYAFEKQKPIILVVNKWDLIEKETNTQHIFMKKMKQNYKFLDWAPICFISAQTG 328

Query: 349 EGLEELINKIKSI 361
             + +L   I  +
Sbjct: 329 SRISKLRETILEV 341


>gi|292806682|gb|ADE42471.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I + L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNAL 166


>gi|292806606|gb|ADE42433.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSVLN 167


>gi|225182107|ref|ZP_03735535.1| GTP-binding protein Era [Dethiobacter alkaliphilus AHT 1]
 gi|225167194|gb|EEG76017.1| GTP-binding protein Era [Dethiobacter alkaliphilus AHT 1]
          Length = 302

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 23/212 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I ++G  N GKS+L NA   + +AI++D P TTR+ +   L  + Y     DT G
Sbjct: 9   RSGF-IALIGRPNVGKSTLMNAFVGEKMAIISDKPQTTRNQIRGILTADDYQAVFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTK 328
           I +    + ++ ++     ++  DLIL L +  +         I    +     I +  K
Sbjct: 68  IHKPQHKLGEKMVQVAVRTLQEVDLILFLVDAAAGPGAGDDYIIRQLSDVETPVILVANK 127

Query: 329 SDL-------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +D                 Y  +    +S+ TG   EEL++ I   L    +  P  + +
Sbjct: 128 ADEAGMEAAQNVLEHYLPLYPFKAALPVSAITGINQEELLSLIVDSLPEGPQYYPEDMIT 187

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
            +     +++ VR  ++  L   +    I  E
Sbjct: 188 DQPERLIVAELVRE-KVLQLTRDEIPHAIAVE 218


>gi|126640577|ref|YP_001083561.1| GTP-binding protein EngA [Acinetobacter baumannii ATCC 17978]
          Length = 399

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 112/278 (40%), Gaps = 38/278 (13%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 3   EQSKTAINEADIIIFVVDARAGLLASDEQIARELRTL-GKKIYLVANKVDGVHAEAALVE 61

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAG 231
              L   E   V     + V   +  +  DI          E  ++ G ++ I+G  N G
Sbjct: 62  FYKLGMGEPLQVAASHGRGVQQMLEDVLQDIP---EDENPEEHDKDTGLRLAIIGRPNVG 118

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KS+L N L  +D  +  D PGTTRD + I  + EG    + DTAG+R     D+++EK  
Sbjct: 119 KSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVRRKGKVDEMIEKFS 178

Query: 289 IKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEE-- 338
           I +T   +++A +++++ +      ++++     +       +    K D  S Y  +  
Sbjct: 179 IVKTLQAMKDAHVVVVVVDAREGIVEQDLHLIGYALEAGRAMVIAINKWDNMSEYDRKQC 238

Query: 339 --------------YDHLISSFTGEGLEELINKIKSIL 362
                           HLIS+  G G+ EL   I    
Sbjct: 239 KLDVERRFDFIPWARIHLISALHGTGVGELYPSIHRAY 276


>gi|122702835|emb|CAL88607.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|326203513|ref|ZP_08193377.1| GTP-binding protein Era [Clostridium papyrosolvens DSM 2782]
 gi|325986333|gb|EGD47165.1| GTP-binding protein Era [Clostridium papyrosolvens DSM 2782]
          Length = 298

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 82/205 (40%), Gaps = 24/205 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L N +  + +AI++D P TTR+ +   +  +   + + DT 
Sbjct: 3   YKSGF-VSVIGRPNVGKSTLLNTITGQKIAIMSDKPQTTRNTIRGVITNKECQLILIDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGT 327
           GI +    + +  +      ++  DL+L L E N++                     I  
Sbjct: 62  GIHKPKTKLGEYMVNVASETIKEVDLVLFLVEANAQPGAQDINIIQQLKQVKTPVFLILN 121

Query: 328 KSDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL S                 +    IS+   +G++ ++ +   ++    +     + 
Sbjct: 122 KVDLVSKEKLLAIIDSYSKLMNFKAIIPISALKNDGIDIILKEALDLIPEGPQFFSEDML 181

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKD 399
           + +      ++ +R  E   LN  D
Sbjct: 182 TDQPEKVIAAEMIR--EKVLLNLDD 204


>gi|190571288|ref|YP_001975646.1| GTP-binding protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018685|ref|ZP_03334493.1| GTP-binding protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357560|emb|CAQ54999.1| GTP-binding protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995636|gb|EEB56276.1| GTP-binding protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 441

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 97/239 (40%), Gaps = 15/239 (6%)

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETE-MQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
             FS +  E  +  L  A+ +  L+ ++ +  Q +   + +  + +       +K    +
Sbjct: 63  TSFSLQVIEQIEFSLSSADVVFFLVDAKVQNEQNKEFAKWLKRKTNKPVILIANKCESHK 122

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLND---ILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
           S     L F         S++  L        L   I       +L E      +I I+G
Sbjct: 123 SENVDYLQFFNFIGPVYISAEHNLGMVDLYDALAGVIEGLSEGTELPESESIRLRIAIIG 182

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-- 284
             N GKS+  N+L  ++  IV+  PGTTRD + I  D  G L+ + DTAGIR   ++V  
Sbjct: 183 RPNVGKSTFLNSLLAENRLIVSSEPGTTRDSVDISYDHNGKLITLIDTAGIRRKANVVDN 242

Query: 285 -EKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYST 334
            E   ++++   ++ + +++L+ +          S  E +       I +  K DL   
Sbjct: 243 LESRFVEKSIESIKRSHVVILMLDSLLGIEQQDLSIAEAAIKGGKGIIIVLNKWDLIGK 301



 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 17/180 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KIVI+G  NAGKS+LFN L  +  A+V+DIPG TRD       +     K+ DT G  +
Sbjct: 2   LKIVIIGLPNAGKSTLFNRLVGRKAAVVSDIPGVTRDRREGIGRISDLEFKVIDTGGWND 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDL 331
                  + I++    + +AD++  L +   + E        +    N   I I  K + 
Sbjct: 62  QTSFSL-QVIEQIEFSLSSADVVFFLVDAKVQNEQNKEFAKWLKRKTNKPVILIANKCES 120

Query: 332 YSTYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           + +   +Y           IS+    G+ +L + +  ++    +          R    +
Sbjct: 121 HKSENVDYLQFFNFIGPVYISAEHNLGMVDLYDALAGVIEGLSEGTELPESESIRLRIAI 180


>gi|122702871|emb|CAL88625.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I + +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122700823|emb|CAL88000.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|317452853|emb|CBL87862.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKVDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|260886788|ref|ZP_05898051.1| GTP-binding protein Era [Selenomonas sputigena ATCC 35185]
 gi|330839400|ref|YP_004413980.1| GTP-binding protein Era [Selenomonas sputigena ATCC 35185]
 gi|260863387|gb|EEX77887.1| GTP-binding protein Era [Selenomonas sputigena ATCC 35185]
 gi|329747164|gb|AEC00521.1| GTP-binding protein Era [Selenomonas sputigena ATCC 35185]
          Length = 297

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 82/214 (38%), Gaps = 24/214 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I ++G  N GKS+L N+L  + + I++D P TTR  +   L      +   DT G
Sbjct: 7   RSGF-IAVVGRPNVGKSTLINSLIGQKIVIMSDKPQTTRTRILCILTEPDAQIVFLDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
           I +    + +  ++     ++  D +  + +   K         E         I +  K
Sbjct: 66  IHKPRHTLGEYMVRAAESTLKEVDAVFFVVDATEKMGPGERYILERLQATKCPCILVVNK 125

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL                Y       IS+     L+ L+ ++K  L       P  + +
Sbjct: 126 LDLIEKPVVLPILESYMKAYPFAGAVPISAKEEVNLDSLLAEVKKYLPEGPAYYPEDMVT 185

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            +     +++ VR  E A L  +D     +A +L
Sbjct: 186 DQPERLIVAELVR--EKALLATRDELPHAMAVDL 217


>gi|218132942|ref|ZP_03461746.1| hypothetical protein BACPEC_00803 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991815|gb|EEC57819.1| hypothetical protein BACPEC_00803 [Bacteroides pectinophilus ATCC
           43243]
          Length = 322

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 92/213 (43%), Gaps = 23/213 (10%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           IS G+ G+I ++G+   I+G  N GKS+L N +  + +AI ++ P TTR+ +      + 
Sbjct: 16  ISDGRSGDI-KSGF-AAIIGRPNVGKSTLMNRIIGQKIAITSNKPQTTRNRIQTVYTDDR 73

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK---- 318
             +   DT GI +  + + +  +      ++  DL+L L E    I +  E    K    
Sbjct: 74  GQIVFLDTPGIHKAKNKLGEYMVGAAEKTIDEVDLVLWLVEPSSFIGAGDEHILEKLSKV 133

Query: 319 NIDFIFIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNK 365
               + +  K D         + + Y  + D      IS++ G G ++L++ I   +   
Sbjct: 134 KSPVVLVINKIDTIKKEEVLPVIAEYKNKMDFAEIVPISAYDGTGTDDLVDVIFKYMPYG 193

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                    + +     +++ VR   + +L+E+
Sbjct: 194 PMFYDEDTVTDQPMRQIVAEIVREKALHALDEE 226


>gi|122702645|emb|CAL88512.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMVK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDSKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122702267|emb|CAL88324.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNNK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERSYAFSSFGVPKSFNISVSHNRGISALIDAVLDALN 167


>gi|122702249|emb|CAL88315.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
             + KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  AFLSKEIKAFNLKAAQMSDLILYVVDGKLIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERTYAFSSFGMPKSFNISVSHNRGISVLIDAILHAL 166


>gi|122702247|emb|CAL88314.1| GTPase [Helicobacter pylori]
 gi|122702289|emb|CAL88335.1| GTPase [Helicobacter pylori]
 gi|122702401|emb|CAL88391.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKITLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700729|emb|CAL87953.1| GTPase [Helicobacter pylori]
 gi|122701679|emb|CAL88229.1| GTPase [Helicobacter pylori]
 gi|122702581|emb|CAL88480.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|283779752|ref|YP_003370507.1| small GTP-binding protein [Pirellula staleyi DSM 6068]
 gi|283438205|gb|ADB16647.1| small GTP-binding protein [Pirellula staleyi DSM 6068]
          Length = 486

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 18/161 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++VI+G  N GKSSL N LA K ++IV D  G TRD +T  ++ EG   ++ DT GI   
Sbjct: 5   QVVIVGRPNVGKSSLLNWLAGKRISIVDDTAGVTRDRITYLMEEEGRFFELVDTGGIGIV 64

Query: 281 D-DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTKSDL 331
           D D + K+  ++  + +E+ADL+L + +  S     +    K     +   + +  K+D 
Sbjct: 65  DCDNLTKQVEQQIEIAIESADLVLFVVDTRSGILPLDEEVAKRLRYIDKPIVCVANKADH 124

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILS 363
            +   +  +            S+      +EL++ I   L 
Sbjct: 125 DAIDCQADEFYKLGRGKLVRVSTLQNRNKDELLHMILERLP 165



 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 12/154 (7%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +  N    L   +        L E       K+ I G  N GKS+  N LA+ +  IV++
Sbjct: 149 QNRNKDELLHMILERLPKPDDLEESPEEPIMKVAICGRRNTGKSTFVNTLARAERVIVSE 208

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLK 306
           + GTTRD + +  +L+G      DT G+R    +    +     R    +  AD++LL  
Sbjct: 209 VAGTTRDSIDVRFELDGKTFMAIDTPGLRRNRSVRTDIDFYSTHRAQRSIRRADVVLLFF 268

Query: 307 EINSKKEISFPKNI--------DFIFIGTKSDLY 332
           +   +      +            IF+  K DL 
Sbjct: 269 DCKQRLSKVDKQLCKYIADNYRPCIFVVNKWDLL 302


>gi|122701637|emb|CAL88208.1| GTPase [Helicobacter pylori]
 gi|122701643|emb|CAL88211.1| GTPase [Helicobacter pylori]
 gi|122701645|emb|CAL88212.1| GTPase [Helicobacter pylori]
 gi|122701659|emb|CAL88219.1| GTPase [Helicobacter pylori]
 gi|122701661|emb|CAL88220.1| GTPase [Helicobacter pylori]
 gi|122701663|emb|CAL88221.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFSISVSHNRGISALIDAILSALN 167


>gi|68535955|ref|YP_250660.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium
           jeikeium K411]
 gi|68263554|emb|CAI37042.1| cytidylate kinase [Corynebacterium jeikeium K411]
          Length = 777

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 82/218 (37%), Gaps = 28/218 (12%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAK 241
           D     S +       + +++     +      + +G + + ++G  N GKSSL N +  
Sbjct: 478 DNPYPVSAQHGKGAADVMDEVLRVFPEHPRELSVVSGPRRVALVGRPNVGKSSLLNKITG 537

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVEN 298
           ++ ++V ++ GTT D +   ++LE    K  DTAGIR+        E     RT   ++ 
Sbjct: 538 EERSVVNNVAGTTVDPVDSIVELEEKTWKFVDTAGIRKKTKQARGHEFYASLRTRSAIDA 597

Query: 299 ADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------- 339
           A++++ L + +            +        +    K DL      E            
Sbjct: 598 AEVVVFLVDASEPIAEQDQRVLRMILDSGRALVVAYNKWDLVDEDRRELLEREIELQLSH 657

Query: 340 -----DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   IS+ TG  L++L   +   L +  +++   
Sbjct: 658 VPWARRVNISAKTGRALQKLEPAMIEALESWDQRISTG 695



 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 72/176 (40%), Gaps = 17/176 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 345 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWSGRRFWVQDTGGWDPDA 404

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
             +     ++    +E AD+I+ + +    I S  E+   K     +  I +  K D  +
Sbjct: 405 KGIHAAIARQAETAMETADVIVFVVDSKVGITSTDEVIARKLQRSKVPVIVVANKCDADA 464

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              +  +           +S+  G+G  ++++++  +     ++L       +  L
Sbjct: 465 QLGDVAEFWALGLDNPYPVSAQHGKGAADVMDEVLRVFPEHPRELSVVSGPRRVAL 520


>gi|325295030|ref|YP_004281544.1| GTP-binding protein Era-like-protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065478|gb|ADY73485.1| GTP-binding protein Era-like-protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 306

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 26/203 (12%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  E  ++GY + ILG  N GKS+L N+     VAIVTD P TTR  +     L+   + 
Sbjct: 3   EQKEKFKSGY-VAILGRPNVGKSTLLNSFLGTKVAIVTDKPQTTRHRIIGVKHLKDAQIV 61

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----------KKEISFPKN 319
             DT GI +    + +   +  F  + +AD+IL L +  S           K      K+
Sbjct: 62  FLDTPGIHKEKFELNRYMNEIAFGVIPDADIILFLIDARSGFTEVDKKILQKIGEEKRKD 121

Query: 320 IDFIFIGTKSD---------LYSTYTEEYDH-----LISSFTGEGLEELINKIKSILSNK 365
              I +  K D         L     +E+        +S+  G  L+ L++ +   L   
Sbjct: 122 TKVIVVINKIDGVPKEELLPLIDEIHKEFPFVSDIVPLSATRGTNLDRLLDLLVKYLPEG 181

Query: 366 FKKLPFSIPSHKRHLYHLSQTVR 388
            K     + +      ++++ +R
Sbjct: 182 PKYYEDHMLTDMPLEQYVAEIIR 204


>gi|160888145|ref|ZP_02069148.1| hypothetical protein BACUNI_00553 [Bacteroides uniformis ATCC 8492]
 gi|160890555|ref|ZP_02071558.1| hypothetical protein BACUNI_02997 [Bacteroides uniformis ATCC 8492]
 gi|156860287|gb|EDO53718.1| hypothetical protein BACUNI_02997 [Bacteroides uniformis ATCC 8492]
 gi|156862280|gb|EDO55711.1| hypothetical protein BACUNI_00553 [Bacteroides uniformis ATCC 8492]
          Length = 396

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 16/171 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V+  PGTT D +T  ++          DT G
Sbjct: 8   NRLHIAVFGRRNSGKSSLVNALTGQDTALVSATPGTTTDPVTKAMEVYPLGPCLFIDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----NIDFIFIGTKSD- 330
             + +  +    ++RT   VE AD+ LLL E +   E  + K      I  I I  K+D 
Sbjct: 68  FDDDEGELGGMRVERTLKTVEKADIALLLYEADGTLEQQWLKLLAAREIPVILILNKADS 127

Query: 331 ---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                           +   ++S+  G G++ + + I   L   F +   +
Sbjct: 128 RQDTASVVLRIEKECGQAPVVVSAKEGTGIQGIFDTILEKLPENFGEQTIT 178


>gi|122702167|emb|CAL88274.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERTYAFSSFGMPKSFNISVSHNRGISALIDAILNTLN 167


>gi|122702287|emb|CAL88334.1| GTPase [Helicobacter pylori]
 gi|122702327|emb|CAL88354.1| GTPase [Helicobacter pylori]
          Length = 168

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
             + KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 67  AFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 126

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 127 EKERTYAFSSFGMPKSFNISVSHNRGISVLIDAILHAL 164


>gi|4467651|emb|CAB37777.1| GTP-binding protein homologue [Helicobacter pylori]
 gi|122701565|emb|CAL88172.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|85703427|ref|ZP_01034531.1| GTP-binding protein EngA [Roseovarius sp. 217]
 gi|85672355|gb|EAQ27212.1| GTP-binding protein EngA [Roseovarius sp. 217]
          Length = 487

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 18/157 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V + PG TRD+      L      + DTAG+ E
Sbjct: 3   FSLAIVGRPNVGKSTLFNRLVGKRLALVDNQPGVTRDLREGAARLGDLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ ++    K T   V+ AD+ L L +  +          EI   ++   I    K++
Sbjct: 63  ATDESLQGRMRKLTERAVDMADVCLFLIDARAGVTPTDEILAEILRKRSAHVILAANKAE 122

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKI 358
             +      +            S+  GEGL +L +++
Sbjct: 123 GSAADAGVIEAWGLGLGEPIRLSAEHGEGLNDLYSQL 159



 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 78/187 (41%), Gaps = 29/187 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N +  ++  +     G TRD +++ +D +G  V+I DTAG+R+
Sbjct: 201 MQVAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLQIDWDGLPVRIFDTAGMRK 260

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
                D +EK  +      V+ A+++++L +     E        ++  +    +    K
Sbjct: 261 KARIQDKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVVVAINK 320

Query: 329 SD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D                  L           +S+ TG+GL+ L + +        +++ 
Sbjct: 321 WDMEPDKSDKIRELREAFERLLPQLRGAPLVTVSAKTGKGLDRLRDAVSKAHEVWNRRVT 380

Query: 371 FSIPSHK 377
            +  +  
Sbjct: 381 TAQLNRW 387


>gi|83945266|ref|ZP_00957615.1| GTP-binding protein EngA [Oceanicaulis alexandrii HTCC2633]
 gi|83851436|gb|EAP89292.1| GTP-binding protein EngA [Oceanicaulis alexandrii HTCC2633]
          Length = 459

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN LA K +AIV D PG TRD       +    +++ DTAG  +  
Sbjct: 8   LAIVGRPNVGKSTLFNRLAGKPLAIVDDRPGVTRDRREARGRIGDLELRLVDTAGYEDDK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +E     +T   ++ AD+ + L +             E+    +   I    K +   
Sbjct: 68  AGIEARMRAQTEAALDEADVCVFLIDGREGITAMDERFAEVLRKSHKPVILAVNKCEGAK 127

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKL 369
                 +            S+  GEG+ +L  ++   +     ++
Sbjct: 128 GEYGAMEAWKLGMGEPVPVSAAHGEGMGDLYARLTDAIEAAQDRI 172



 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 91/201 (45%), Gaps = 32/201 (15%)

Query: 197 LFLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
              ++ I + +     GE         ++ + G  N GKS+L NAL  +D  I     G 
Sbjct: 166 EAAQDRIRAEMEADGYGEGDDEEDPPLRLAVAGRPNVGKSTLINALIGEDRLITGPEAGL 225

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN- 309
           TRD + ++ + +G  V++ DTAG+R+    DD +E+     T   ++ A+++LLL +   
Sbjct: 226 TRDAIAVEWEWDGQRVRLHDTAGLRKRGKVDDRLERMSAADTLRAIKFAEIVLLLVDAER 285

Query: 310 --SKKEISFP-----KNIDFIFIGTKSDLY-------STYTEEYD-----------HLIS 344
              K++++       +    + + TK DL        +   EE++             IS
Sbjct: 286 PFEKQDLTIADRVVTEGRGLVVLITKWDLIEDKQAKLAELREEFERLLPQIKGAPLIPIS 345

Query: 345 SFTGEGLEELINKIKSILSNK 365
           S +G GLE+++  + ++  N 
Sbjct: 346 SISGRGLEKIMPAVSALHKNW 366


>gi|319956402|ref|YP_004167665.1| ribosome-associated GTPase enga [Nitratifractor salsuginis DSM
           16511]
 gi|319418806|gb|ADV45916.1| ribosome-associated GTPase EngA [Nitratifractor salsuginis DSM
           16511]
          Length = 462

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 27/198 (13%)

Query: 202 DISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            +   +   +  +   +   K+ ILG  N GKSSL NAL  ++ ++V+++ GTT D +  
Sbjct: 179 SLEQLLEMAEQPQEEEDRKIKVAILGRPNVGKSSLLNALLGEERSVVSEVAGTTIDPVDE 238

Query: 261 DLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEIN------SKK 312
            +    Y +   DTAGIR    I  +EK  + RT   ++ AD+ LLL +         ++
Sbjct: 239 TIIHGDYEITFVDTAGIRRRSKILGIEKYALGRTEKMLQEADIALLLIDATTGVTELDER 298

Query: 313 EISFPKNIDFI--FIGTKSDL---------YSTYTEEYDHLI-------SSFTGEGLEEL 354
                         +  K D+              +E   L        S+ T + + ++
Sbjct: 299 IAGLIDKYKLGALIVVNKWDIRGEKEYKEAIQDIRDELKFLHYAPIITVSAKTKQRVSKI 358

Query: 355 INKIKSILSNKFKKLPFS 372
           +++I +I     +++P S
Sbjct: 359 LDQITAIYERYKQRIPTS 376



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 18/194 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           K+ ILG  N GKSSLFN LA+K  AI +D+ GTTRD+    + + E    ++ DT GI E
Sbjct: 3   KVAILGRPNVGKSSLFNRLARKRDAITSDVSGTTRDIKKNIVTISEDREFELLDTGGIDE 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDL 331
           +D +  K   + +    + AD+IL + +     +    K        +     I  K D 
Sbjct: 63  SDALFSK-VAEMSKRAAKEADVILYMVDGKKLPDEEDKKLFYELQALDKPIALIVNKIDN 121

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                E +         E +E     +  I  +  +KL       +R++    +T + L+
Sbjct: 122 DKEEQERF--------WEFIEFGAENVFPISVSHNRKLNPLYKWLERYIPPAEKTAQSLQ 173

Query: 392 MASLNEKDCGLDII 405
                  +  L++ 
Sbjct: 174 ADEDFSLEQLLEMA 187


>gi|122701449|emb|CAL88114.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRALN 167


>gi|7208811|emb|CAB76934.1| putative GTP-binding protein [Clostridium thermocellum]
          Length = 400

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 12/156 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKSS+ NA+  +++AIV+D+ GTT + +   ++L     V I DT G
Sbjct: 10  NRLHIGFFGKRNAGKSSVVNAVTGQNLAIVSDVKGTTTNPVYKAMELLPLGPVVIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
           I +   + E   +KR+   +   D+ +L+ +    K        E+   K+I ++ +  K
Sbjct: 70  IDDKGTLGEMR-VKRSRQVLNKTDIAVLVIDATCGKSEDDEKLIELFEKKDIKYVVVYNK 128

Query: 329 SDL--YSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           +DL  +     + +  +S+ TG  + +L  KI S+ 
Sbjct: 129 ADLEGHEETVGDNEIYVSAKTGYNINKLKEKIASLA 164


>gi|122702399|emb|CAL88390.1| GTPase [Helicobacter pylori]
 gi|122702503|emb|CAL88442.1| GTPase [Helicobacter pylori]
 gi|122702831|emb|CAL88605.1| GTPase [Helicobacter pylori]
 gi|195954199|gb|ACG58805.1| YphC [Helicobacter pylori]
 gi|195954201|gb|ACG58806.1| YphC [Helicobacter pylori]
 gi|195954203|gb|ACG58807.1| YphC [Helicobacter pylori]
 gi|195954213|gb|ACG58812.1| YphC [Helicobacter pylori]
 gi|195954221|gb|ACG58816.1| YphC [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122702767|emb|CAL88573.1| GTPase [Helicobacter pylori]
 gi|122702769|emb|CAL88574.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|93004276|gb|ABE97058.1| YphC [Helicobacter pylori]
 gi|122700717|emb|CAL87947.1| GTPase [Helicobacter pylori]
 gi|122701717|emb|CAL88248.1| GTPase [Helicobacter pylori]
 gi|122702179|emb|CAL88280.1| GTPase [Helicobacter pylori]
 gi|195954219|gb|ACG58815.1| YphC [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSAL 166


>gi|311031640|ref|ZP_07709730.1| GTP-binding protein Era [Bacillus sp. m3-13]
          Length = 305

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 90/217 (41%), Gaps = 28/217 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +      +   +   DT 
Sbjct: 9   YKSGF-VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVFTQDDAQIVFIDTP 67

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFI 325
           GI +    +    +K     ++  DL+L +  IN+K+ +              +     +
Sbjct: 68  GIHKPKHKLGDFMMKVAQNTLKEVDLVLFM--INAKEGLGKGDEFIIEKLKETSTPVYLV 125

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L  TY   Y       IS+  G  +E L+++IK  L    +  P  
Sbjct: 126 INKIDEVHPDDLLPLMETYKALYPFKEIVPISALQGNNVEVLLDQIKKFLPEGPQYYPAD 185

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
             +     + +++ +R  ++  L  ++    I +A +
Sbjct: 186 QVTDHPERFIVAELIRE-KVLHLTREEVPHSIAVAID 221


>gi|122701533|emb|CAL88156.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I  +L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILRVLN 167


>gi|307720282|ref|YP_003891422.1| ribosome-associated GTPase EngA [Sulfurimonas autotrophica DSM
           16294]
 gi|306978375|gb|ADN08410.1| ribosome-associated GTPase EngA [Sulfurimonas autotrophica DSM
           16294]
          Length = 492

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 31/228 (13%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           F     +  E++    +  +E+ +D +F +ND      +  +     N  KI I+G +N 
Sbjct: 189 FFSQYAEDEEDDGYIYWDEEEIEDDSIFAQNDRIKEFDENDI-----NHIKIAIIGRTNV 243

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEG 288
           GKSSL NAL  ++ ++V+ + GTT D +   +  +   +   DTAG+R    I  +EK  
Sbjct: 244 GKSSLLNALLGEERSVVSSVAGTTIDPIDETIVYKDKQLTFVDTAGLRRRGKIVGIEKFA 303

Query: 289 IKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
           + RT   +ENA++ L++ + +            +     +  I +  K D+      +  
Sbjct: 304 LMRTKEMLENANMALVVLDASEPFLDLDEKIAGLVDQNRLACIIVLNKWDIAKREDHDKI 363

Query: 341 HLI----------------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                              S+ + + +++L + I  I  N  +++P S
Sbjct: 364 IKEVRDRFKFLAYAPIITLSAKSHQRVDKLHDMILEINENYSQRIPTS 411



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 13/163 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSLFN L KK  AI +D+ GTTRDV      +     ++ DT G+ + 
Sbjct: 3   KIAIIGRPNVGKSSLFNRLVKKRDAITSDLAGTTRDVKRKTALIIDKEAELLDTGGLDKG 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD-- 330
            ++ +K   + +      AD+IL + +     E    K          D   +  K D  
Sbjct: 63  CELFDKIK-EMSLKAAYKADIILFMVDGKGLPEEEDKKLFYELQAMGKDIALVVNKIDND 121

Query: 331 -LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            +     E Y+    +  G  +    N +  +L   + KLP S
Sbjct: 122 KMKEKLWEFYEFGTDAIFGISVAHNRNTV-ELLDWIYDKLPES 163


>gi|292806672|gb|ADE42466.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|292806554|gb|ADE42407.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806556|gb|ADE42408.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|114771865|ref|ZP_01449258.1| GTP-binding protein EngA [alpha proteobacterium HTCC2255]
 gi|114547681|gb|EAU50572.1| GTP-binding protein EngA [alpha proteobacterium HTCC2255]
          Length = 497

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 9/120 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + ++G  N GKS+LFN L  + +A+V D PG TRD+   D  +      + DTAG+ E
Sbjct: 3   FTVALVGRPNVGKSTLFNRLVGRRLALVDDQPGVTRDLREGDAKMGPVKFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ ++      T   V+ AD+ + + +  +          EI   K+   I +  K++
Sbjct: 63  ATDESLQGRMRMLTERAVDMADVCIFMMDARAGVLPADRVFAEILRKKSAKVILVANKAE 122



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 31/196 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I I+G  NAGKS+L N +  ++  +     G TRD ++I+ D +   +++ DTAGIR+
Sbjct: 201 LQISIIGRPNAGKSTLVNQILGQERMLTGPEAGITRDSISINHDWDDVPMRLWDTAGIRK 260

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      V+ ++++++L +     E        ++  +    +    K
Sbjct: 261 KAKVQEKLEKLSVSDGLRAVKFSEVVVVLLDAAIPFEQQDLRIADLAEREGRAVVVAVNK 320

Query: 329 SDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D+ +   E+                      IS+ TG GL+ L   I S      K+L 
Sbjct: 321 WDVETEKQEKLKDIREKFTRLLPQLRGAPLVTISAKTGRGLDRLHAAILSAHKVWNKRLS 380

Query: 371 FSIPSHKRHLYHLSQT 386
            S     R L  ++  
Sbjct: 381 TS--QCNRWLMDMTDA 394


>gi|317452813|emb|CBL87842.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|304372871|ref|YP_003856080.1| Predicted GTPase protein [Mycoplasma hyorhinis HUB-1]
 gi|304309062|gb|ADM21542.1| Predicted GTPase protein [Mycoplasma hyorhinis HUB-1]
          Length = 433

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 15/167 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L  K V+I+ D PG TRD +   ++  G    + DT GI   +
Sbjct: 5   VALIGKPNVGKSTLFNKLVGKKVSIIHDSPGVTRDRIYSKVEWAGKEFYLIDTGGIEIEN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKK----EISFPKNIDFIFIGTKSD--- 330
              +++   +T + +E A+LI+ L +    I+S      ++    +   +    K +   
Sbjct: 65  KSFQEQIRIQTQIAIEEANLIIFLVDGRVEIDSDDHFVIDLLRKSSKKVLIAANKLEGNK 124

Query: 331 ----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                  +   E+   IS+  GEG+ +L+++    L    +K   + 
Sbjct: 125 FFDTSIYSLGFEHIFPISAIHGEGVGDLLDETIRSLDFTKEKENEAF 171



 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 31/193 (16%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L ++    +   K  E     +++ I+G  NAGKS+L N LA ++ +IV+ I GTTRD 
Sbjct: 151 DLLDETIRSLDFTKEKE--NEAFRLAIIGKPNAGKSTLLNKLANENRSIVSPIAGTTRDS 208

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINSK--- 311
           ++  + ++    +I DTAGI     I +      + R F  +++A L L+L +   +   
Sbjct: 209 VSSFIKIDKIDFEIIDTAGIIRKSKIAQSVDFYALLRAFNSLDDAQLSLILIDATQELSH 268

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
                   +F K    I +  K DL    T                        IS+ TG
Sbjct: 269 FDARLAGYAFEKQKPIILVVNKWDLIEKETNTQHIFMKKIKQNYKFLDWAPICFISAQTG 328

Query: 349 EGLEELINKIKSI 361
             + +L   I  +
Sbjct: 329 SRISKLRETILEV 341


>gi|122702193|emb|CAL88287.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFSISVSHNRGISALIDAILSAL 166


>gi|122700675|emb|CAL87926.1| GTPase [Helicobacter pylori]
 gi|122701503|emb|CAL88141.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|122700711|emb|CAL87944.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I + L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNAL 166


>gi|18075583|emb|CAD11187.1| GTP-binding protein [Helicobacter pylori]
 gi|122702811|emb|CAL88595.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|152990747|ref|YP_001356469.1| GTP-binding protein Era [Nitratiruptor sp. SB155-2]
 gi|151422608|dbj|BAF70112.1| GTP-binding protein Era [Nitratiruptor sp. SB155-2]
          Length = 293

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 20/191 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L  + +A+V+     TR  L   +      +   DT G
Sbjct: 5   RSGF-VALVGRPNAGKSTLLNWLLGEKIAMVSHKAQATRKRLYAIVMHGNDQIVFIDTPG 63

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKNIDFIFIGTKSDL 331
           + E + ++ K  ++     + + DLIL L  +       +K +   KN   I + TK D+
Sbjct: 64  LHEKERLLNKFMLEEAIKAIGDCDLILFLAPVTDPITHYEKFLKLAKNRPHIVVLTKIDM 123

Query: 332 YSTYT-----EEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            S         EY             S     G ++L++ I   L          + + +
Sbjct: 124 VSNEKLLQKIAEYQKFQDQFLELVPVSVKKDIGKKDLLDTIVRYLPEHPYYYDPELLTTE 183

Query: 378 RHLYHLSQTVR 388
                  + +R
Sbjct: 184 NIKDIYKELIR 194


>gi|122701551|emb|CAL88165.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRAL 166


>gi|4467659|emb|CAB37781.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISTLIDAILSALN 167


>gi|317452845|emb|CBL87858.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|270156684|ref|ZP_06185341.1| putative GTP-binding protein EngA [Legionella longbeachae D-4968]
 gi|289164869|ref|YP_003455007.1| GTPase involved in ribosome synthesis and maintenance [Legionella
           longbeachae NSW150]
 gi|269988709|gb|EEZ94963.1| putative GTP-binding protein EngA [Legionella longbeachae D-4968]
 gi|288858042|emb|CBJ11902.1| GTPase involved in ribosome synthesis and maintenance [Legionella
           longbeachae NSW150]
          Length = 466

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 29/192 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI   G  N GKS+L N +  ++  +V D+PGTTRD + I    +     + DTAG+R 
Sbjct: 175 IKIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSIAIPFARDNQQYVLIDTAGVRR 234

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTK 328
               D+ +EK  + +T   +E +++ L L + N   + ++++            +    K
Sbjct: 235 KSRIDEKIEKFSVIKTLKAIEESNVCLQLLDANEGITDQDMNLLGFIIESGKALVIAVNK 294

Query: 329 SD-LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D L   + E+                   IS+  G G+  L   I    ++  +   FS
Sbjct: 295 WDGLDEEHKEKIKSELSRRLHFANFAKIRFISALHGSGVGNLFKDINEAYTSAIQS--FS 352

Query: 373 IPSHKRHLYHLS 384
            P   R L  LS
Sbjct: 353 TPKLTRLLQDLS 364



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 17/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   A+V D PG TRD        +     + DT GI   D
Sbjct: 5   IALVGRPNVGKSTLFNKLTKTQDALVADYPGLTRDRQYGQAQHDDKHYIVVDTGGIGIDD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-------INSKKEISFPK-NIDFIFIGTKSDLYS 333
             V+    K++ + +  AD++L L +       I+ K   +  K N     +  K++   
Sbjct: 65  IAVDSLMSKQSEIALHEADIVLFLVDGRDGLTGIDEKIATNLRKLNKKVHLVVNKTEGLD 124

Query: 334 TYTEEYDHLISSFT---------GEGLEELINKIKSILSNKFKKLPF 371
                 D      T         G G+  L++ I S    + +K+  
Sbjct: 125 DDIACADFQSLGITSIHSISSSHGTGIRTLLDDILSPFVPQCEKVEE 171


>gi|260887890|ref|ZP_05899153.1| GTP-binding protein [Selenomonas sputigena ATCC 35185]
 gi|330838754|ref|YP_004413334.1| small GTP-binding protein [Selenomonas sputigena ATCC 35185]
 gi|260862396|gb|EEX76896.1| GTP-binding protein [Selenomonas sputigena ATCC 35185]
 gi|329746518|gb|AEB99874.1| small GTP-binding protein [Selenomonas sputigena ATCC 35185]
          Length = 399

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 17/171 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++    GE +  G+     G  NAGKSSL NA+  ++VA+V+   GTT D +   ++L  
Sbjct: 3   LNDTPSGERLHIGF----FGRRNAGKSSLINAITGQEVAVVSPEKGTTTDPVAKAMELLP 58

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFP 317
              V + DT G  +T D+ E   +KRT   +   D+ +L+ +             +I   
Sbjct: 59  LGPVLLIDTPGFDDTGDLGELR-VKRTRRILNKTDIAVLVLDAAEGMTAVDEELMQIFRE 117

Query: 318 KNIDFIFIGTKSD---LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           K+I  + +  K +     S+   E    +S+    G+ EL  ++  I+  +
Sbjct: 118 KDIPHLIVCNKCEDEKPPSSAGNERIFHVSALKKLGINELKERLSQIMPQE 168


>gi|242255900|gb|ACS88934.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I  +L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVL 166


>gi|242255894|gb|ACS88931.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I + L
Sbjct: 129 EKEQSYAFSSFGMPKSFNISVSHNRGISALIDAILNAL 166


>gi|126657428|ref|ZP_01728587.1| GTP-binding protein Era [Cyanothece sp. CCY0110]
 gi|126621415|gb|EAZ92127.1| GTP-binding protein Era [Cyanothece sp. CCY0110]
          Length = 314

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 83/206 (40%), Gaps = 25/206 (12%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           S I     G   ++G+ + I+G  N GKS+L N L  + +AI + +  TTR+ L   L  
Sbjct: 11  SVIPTAPEG--FKSGF-VGIIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLQGILTT 67

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK 318
           E   +   DT GI +    + K  +K   + + + D+IL + + + K        I   K
Sbjct: 68  EQAQIIFVDTPGIHKPHHTLGKIIVKNAKMAINSVDVILFVVDSSVKSGGGDRYIIDLLK 127

Query: 319 --NIDFIFIGTKSDLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSIL 362
             N   I    K D  S   ++ D                 S+ TG GLE L N +   L
Sbjct: 128 TINQPVILGLNKQDQQSEDYQQIDESYTNLIESYHWPIIKFSALTGNGLETLQNTLIEKL 187

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVR 388
                  P  + + +   + + + +R
Sbjct: 188 DPGPYYYPPDLITDQPERFIMGELIR 213


>gi|122702405|emb|CAL88393.1| GTPase [Helicobacter pylori]
 gi|122702411|emb|CAL88396.1| GTPase [Helicobacter pylori]
 gi|122702413|emb|CAL88397.1| GTPase [Helicobacter pylori]
 gi|122702415|emb|CAL88398.1| GTPase [Helicobacter pylori]
 gi|122702419|emb|CAL88400.1| GTPase [Helicobacter pylori]
          Length = 168

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
             + KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 67  AFLSKEIKAFNLKAAQMSDLILYVVDGKLIPSDEDIKLFREVFKINPNCFLVINKIDNDK 126

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 127 EKERTYAFSSFGMPKSFNISVSHNRGISVLIDAILHAL 164


>gi|122701621|emb|CAL88200.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGVAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|93004280|gb|ABE97060.1| YphC [Helicobacter pylori]
 gi|122700815|emb|CAL87996.1| GTPase [Helicobacter pylori]
 gi|122700849|emb|CAL88013.1| GTPase [Helicobacter pylori]
 gi|122700873|emb|CAL88025.1| GTPase [Helicobacter pylori]
 gi|122702547|emb|CAL88463.1| GTPase [Helicobacter pylori]
 gi|292806580|gb|ADE42420.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|317452829|emb|CBL87850.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|262340851|ref|YP_003283706.1| putative GTP-binding protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272188|gb|ACY40096.1| putative GTP-binding protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 292

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 23/212 (10%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I ++G+ + I+G  N GKS+L N+L  + ++I T  P TTR  +   ++   + +  SDT
Sbjct: 2   IHKSGF-VNIIGFPNTGKSTLMNSLVGEKLSITTYKPQTTRHRILGIINESNFQIIFSDT 60

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----NIDFIFIGTKS 329
            GI +    ++K  ++     +E+AD+IL L EI   + I         N+  I +  K 
Sbjct: 61  PGIIDPVYPMQKIMMQYVEKALEDADIILFLTEIGKLENIPIFNEIKKTNVPIIILINKI 120

Query: 330 DLYSTYTEEY------DHLI-----------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D       EY      +H             S+      + L+NKI  +LS         
Sbjct: 121 DQIGIKYREYVLYDAINHWHKLFPNSEILPISALKKMNQDLLMNKIIDLLSEHPPYYSKE 180

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
             S++   + +++ +R        E    ++I
Sbjct: 181 FLSNRSKRFFVNEIIREKYFFIQKEIPYSVEI 212


>gi|122702123|emb|CAL88252.1| GTPase [Helicobacter pylori]
 gi|122702555|emb|CAL88467.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700773|emb|CAL87975.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L+++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILRALN 167


>gi|301058126|ref|ZP_07199178.1| GTP-binding protein Era [delta proteobacterium NaphS2]
 gi|300447758|gb|EFK11471.1| GTP-binding protein Era [delta proteobacterium NaphS2]
          Length = 294

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +    +AIV+  P TTR+ +          +   DT GI  T 
Sbjct: 8   IGIVGPPNVGKSTLLNRIMGTKLAIVSPKPQTTRNRILGVFHQHDCQMVFMDTPGIHRTR 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD--- 330
             + K  +   F      D+IL++ E + ++  + P                  K D   
Sbjct: 68  TALHKSMVDAAFAAFHEVDMILMMVEADPRENPAVPSIIRGLKSIAKPRFLAINKIDRVK 127

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 L + Y  + D      IS+  G G++ L+ ++K  L    +  P  + + +   
Sbjct: 128 KEHILPLLADYGRKLDFDAIIPISALKGNGVDTLLQELKRRLKPGPQFFPEDMDTDQSEA 187

Query: 381 YHLSQTVRYLEMASLNEK 398
           + +++ +R      L+++
Sbjct: 188 FMVAEIIREKIYEQLSQE 205


>gi|293373216|ref|ZP_06619578.1| small GTP-binding protein domain protein [Bacteroides ovatus SD CMC
           3f]
 gi|292631864|gb|EFF50480.1| small GTP-binding protein domain protein [Bacteroides ovatus SD CMC
           3f]
          Length = 395

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 17/169 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I   G  N+GKSSL NAL  +D A+V+D PGTT D+++  ++++G       DT G  
Sbjct: 12  LHIAFFGRRNSGKSSLINALTGQDTALVSDTPGTTTDLVSKAMEIQGIGPCLFIDTPGFD 71

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSDL-- 331
           +  ++ E   I RT   +E  D+ LLL       E     +   KNI  I +  K D+  
Sbjct: 72  DEGELGELR-ISRTLKAIEKTDIALLLCGDTFSHEKEMLALLKEKNIPVIPVLNKIDIRE 130

Query: 332 ----YSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                +TY EE       LIS+    G+E++   I   L + F +   +
Sbjct: 131 NSDSLATYIEEECKIRPLLISAKEKTGIEQIRQAILEKLPSDFGQQSIT 179


>gi|254445513|ref|ZP_05058989.1| GTPase, putative [Verrucomicrobiae bacterium DG1235]
 gi|198259821|gb|EDY84129.1| GTPase, putative [Verrucomicrobiae bacterium DG1235]
          Length = 468

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 20/188 (10%)

Query: 193 LNDILFLKNDISSH-ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
             ++L ++++++   I +   G+ +    K+  +G  N GKSSL N L + +  IV+D+P
Sbjct: 158 RREVLRIRDEVAGPPIEEEDDGKKV---LKVCFIGRPNVGKSSLSNCLVQSERFIVSDVP 214

Query: 252 GTTRDVLTIDLDL-----EGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLIL 303
           GTTRD + +         E +   ++DTAGIR+   +    E     R+   + + D++ 
Sbjct: 215 GTTRDSIEMPFVWKSKRGEDWHFMLTDTAGIRKQTKLNSSVEYFSRVRSLDAIRDVDVVF 274

Query: 304 LLKEI-----NSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           ++ +      N  K I   +   N   + +  K DL     E  +        +  E   
Sbjct: 275 MVIDAKEGPTNQDKAIAGEATKANKPVVIVVNKWDLALKAWENEEIDGFETEKQFREAFE 334

Query: 356 NKIKSILS 363
             I   L 
Sbjct: 335 KGIHRELF 342



 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 26/165 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS LFN LA K ++IV D+PG TRD++T DLD       + DT G+  
Sbjct: 3   FTVAIVGRPNVGKSRLFNRLAGKRISIVHDMPGVTRDIITRDLDDG---YTLMDTGGMGL 59

Query: 280 TDDIVEKEGIK------RTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFI 325
            + + +  G        +    ++ A+LIL + +         K+     +      I +
Sbjct: 60  VEGMSDTPGKIVDAVEGQIEFSIDAANLILFVVDGREGLMPLDKQMAERLRKGEKRVILV 119

Query: 326 GTKSDLYSTYTEEYD---------HLISSFTGEGLEELINKIKSI 361
             K D   T   E +         HL+S+  G G+  L  ++  I
Sbjct: 120 INKVDTEQTAINEKEFYRYGFGEPHLVSAEHGRGMNTLRREVLRI 164


>gi|122702567|emb|CAL88473.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILRALN 167


>gi|4467681|emb|CAB37792.1| GTP-binding protein homologue [Helicobacter pylori]
 gi|122702711|emb|CAL88545.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRALN 167


>gi|18075605|emb|CAD11198.1| GTP-binding protein [Helicobacter pylori]
          Length = 347

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 39/222 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERAYAFSSF-----------------GMPKSFNISVSHNRGISALIDAVLNALNLN 170

Query: 394 SLNEKDCGLDIIAENLRLASVSLGK----------ITGCVDV 425
            + E+D   DI+ E+L   + +L +          I G V+V
Sbjct: 171 QIIEQDLDADIL-ESLETPNNALEETKEEEIIQVGIIGRVNV 211



 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 17/182 (9%)

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           I + I+A L+      +        + + L   N   + + + K  EII+ G    I+G 
Sbjct: 156 ISALIDAVLNALNLNQIIEQDLDADILESLETPN---NALEETKEEEIIQVG----IIGR 208

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VE 285
            N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR    I  +E
Sbjct: 209 VNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRGKILGIE 268

Query: 286 KEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKSDLYSTYTE 337
           K  ++RT   +E + + LL+ ++++      ++IS   +      I I  K D+     E
Sbjct: 269 KYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYE 328

Query: 338 EY 339
           E 
Sbjct: 329 EI 330


>gi|242255874|gb|ACS88921.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       +S     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMSKSFNVSVSHNRGISALIDAILNALN 167


>gi|313892377|ref|ZP_07825969.1| ribosome biogenesis GTPase Era [Dialister microaerophilus UPII
           345-E]
 gi|313119236|gb|EFR42436.1| ribosome biogenesis GTPase Era [Dialister microaerophilus UPII
           345-E]
          Length = 301

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 85/209 (40%), Gaps = 22/209 (10%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E   +G+ I ++G  N GKS+L N +  + ++IV+    TTR+ +T   + E   + 
Sbjct: 2   DNEEKFHSGF-IALVGRPNVGKSTLLNTVLGEKISIVSAHAQTTRNKITGVWNGENSQIV 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDF 322
             DT G+ +    + +   + T   +   D+++++   +            +   K    
Sbjct: 61  FLDTPGMHKPKSKLGEVIRQSTVDAIGEVDIVVMICACDDPPGAGDRYLLSLLENKKTPV 120

Query: 323 IFIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           + +  K DL S              Y  +    +S+ TG  ++EL+  ++ +L    K  
Sbjct: 121 VLVLNKIDLVSEVAILKKIKQYSQMYNFKEIIPVSAQTGRNMDELMQVLEKMLPEGPKYF 180

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           P  + + +     + + VR   +   +E+
Sbjct: 181 PDDMITDQPERIIVQEIVREKILLRTHEE 209


>gi|122702293|emb|CAL88337.1| GTPase [Helicobacter pylori]
 gi|122702303|emb|CAL88342.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYTFSSFGAPKSFNISVSHNRGISALIDAVLDALN 167


>gi|317452819|emb|CBL87845.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILSALN 167


>gi|122702705|emb|CAL88542.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISTLIDAILSAL 166


>gi|122701487|emb|CAL88133.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS+    G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISASHNRGISALIDAILNALN 167


>gi|122700857|emb|CAL88017.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                 ++S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYVFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700677|emb|CAL87927.1| GTPase [Helicobacter pylori]
 gi|122701411|emb|CAL88095.1| GTPase [Helicobacter pylori]
 gi|122701429|emb|CAL88104.1| GTPase [Helicobacter pylori]
 gi|122701497|emb|CAL88138.1| GTPase [Helicobacter pylori]
 gi|122701601|emb|CAL88190.1| GTPase [Helicobacter pylori]
 gi|122702695|emb|CAL88537.1| GTPase [Helicobacter pylori]
 gi|122702873|emb|CAL88626.1| GTPase [Helicobacter pylori]
 gi|242255826|gb|ACS88897.1| GTPase [Helicobacter pylori]
 gi|242255930|gb|ACS88949.1| GTPase [Helicobacter pylori]
 gi|292806510|gb|ADE42385.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806520|gb|ADE42390.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806586|gb|ADE42423.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806646|gb|ADE42453.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|99905859|gb|ABF68624.1| YphC [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  TLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILDTLN 167


>gi|146278196|ref|YP_001168355.1| GTP-binding protein EngA [Rhodobacter sphaeroides ATCC 17025]
 gi|166225848|sp|A4WUI6|DER_RHOS5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145556437|gb|ABP71050.1| small GTP-binding protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 487

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 18/173 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   D  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGDARLIDLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD ++    + T   VE AD+ L L +             +I   KN   I    K++
Sbjct: 63  VTDDSLQGRMRRLTERAVEMADVCLFLIDGRVGVTPSDEVFADILRKKNAHVILGVNKAE 122

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +      +            S+  GEG+++L + ++ I     ++     P
Sbjct: 123 GRAGDAGAIEAWSLGLGEPVRLSAEHGEGMDDLYHILRPIAEGFAERAAADAP 175



 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 16/153 (10%)

Query: 153 ELSSLYGQWIDKLTHIR---SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209
            LS+ +G+ +D L HI    +   A+   ++   V    S+E       L+ D  +H   
Sbjct: 143 RLSAEHGEGMDDLYHILRPIAEGFAERAAADAPVVDVDVSEE----EADLEADPDAHKPT 198

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            K         +I ++G  NAGKS+L N +  +D  +     G TRD +++  + +G  +
Sbjct: 199 VKR------PLQIAVIGRPNAGKSTLINKIIGEDRLLTGPEAGITRDAISVRSEWQGTPI 252

Query: 270 KISDTAGIRET---DDIVEKEGIKRTFLEVENA 299
           +I DTAG+R+     D +EK  +      V  A
Sbjct: 253 RIFDTAGMRKKARISDKLEKLSVADGLRAVRFA 285


>gi|302518233|ref|ZP_07270575.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB78]
 gi|302427128|gb|EFK98943.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB78]
          Length = 488

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 78/204 (38%), Gaps = 21/204 (10%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D +     E+  +  F   D+   I +   G + R    + ++G  N GKS+L N +  +
Sbjct: 17  DAEYERFMELAAEEGFDVEDVEDAIGEAGHGPLPR----LAVVGRPNVGKSTLVNRIIGR 72

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +E +D +
Sbjct: 73  REAVVEDRPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDVLGIDASVAAQAEYAIEASDAV 132

Query: 303 LLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY---------DHLISS 345
           + + +          +   +        +    K D  S   +            H +S+
Sbjct: 133 VFVVDATVGATDTDEAVVRLLRKAGKPVVLCANKVDGPSGEADAAMLWSLGLGEPHPVSA 192

Query: 346 FTGEGLEELINKIKSILSNKFKKL 369
             G G  ++++ +   L +  K  
Sbjct: 193 LHGRGTGDMLDAVLEALPDAPKDT 216



 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 86/237 (36%), Gaps = 35/237 (14%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
              + +   L   E   V     +   + +  +   +         G  I    ++ ++G
Sbjct: 173 EADAAMLWSLGLGEPHPVSALHGRGTGDMLDAVLEALPDAPKDTFGGTGIGGPRRVALIG 232

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N GKSSL N LA +D  +V +  GTTRD +   ++L G   K  DTAGIR+   + + 
Sbjct: 233 RPNVGKSSLLNKLAGEDRVVVNEQAGTTRDPVDELIELGGVTWKFVDTAGIRKRVHLQQG 292

Query: 287 EGIKRTFLE-------------VENADLILLLKEINSKKEISFPKNIDFIFIG--TKSD- 330
                +                ++ AD I     +  ++ ++   +     +    K D 
Sbjct: 293 ADYYASLRTAAAVEKAEVAVVLIDGADSI----SVQDQRILTMAVDAGRALVLAYNKWDT 348

Query: 331 --------LYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   L      E           IS+ TG  +E+L+  +++ L+    ++P  
Sbjct: 349 LDEERRYYLEREIERELGQVAWAPRVNISARTGRHMEKLVPALETALAGWETRVPTG 405


>gi|122701523|emb|CAL88151.1| GTPase [Helicobacter pylori]
 gi|122701525|emb|CAL88152.1| GTPase [Helicobacter pylori]
 gi|122701531|emb|CAL88155.1| GTPase [Helicobacter pylori]
 gi|122702611|emb|CAL88495.1| GTPase [Helicobacter pylori]
 gi|122702773|emb|CAL88576.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLN 167


>gi|317453535|emb|CBL87877.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   + S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSVPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERVYAFSSFGMPKSFNISVSHNRGISALIDAVLRALN 167


>gi|242255968|gb|ACS88968.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKSLNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|242255964|gb|ACS88966.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|122700607|emb|CAL87892.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAILNTLN 167


>gi|146296963|ref|YP_001180734.1| GTP-binding protein Era [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|189037251|sp|A4XKV8|ERA_CALS8 RecName: Full=GTPase Era
 gi|145410539|gb|ABP67543.1| GTP-binding protein Era [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 300

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 85/199 (42%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N    K ++I++  P TTR+ +   L L+   +   DT G+    
Sbjct: 8   VALIGRPNVGKSTLMNYFVGKKISIISPKPQTTRNSIKGILTLDDAQIIFIDTPGVHPPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI---------NSKKEISFPKNIDFIFIGTKSDLY 332
           + + +  +K +   ++  DLIL + E           +  E         I +  K+DL 
Sbjct: 68  NKLGEYMVKVSEKTLKEVDLILYIVEAIDSGIGPWDEAILEKLKEVQTPKILVLNKADLA 127

Query: 333 ST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           S               + E+   I++  G   + L+ KIK +L    K     + +  R 
Sbjct: 128 SKENIEILKSLFSGRLSFEFIIEIAAINGYNCDVLLEKIKKLLPEGPKYYLDDMTTDVRE 187

Query: 380 LYHLSQTVRYLEMASLNEK 398
            + +S+ +R   + +L+E+
Sbjct: 188 SFIVSEIIREKILLNLSEE 206


>gi|325000201|ref|ZP_08121313.1| GTP-binding protein Der [Pseudonocardia sp. P1]
          Length = 441

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D    G   K+ DT G     
Sbjct: 7   LAVVGRPNVGKSTLVNRMLGRREAVVQDVPGVTRDRVVYDGLWNGRRFKLMDTGGWEPDA 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
           D ++    ++    +  AD +LL+ + +        +   +     +  +   TK D   
Sbjct: 67  DGLQGFVAQQAETAMRTADAVLLVVDASVGATATDQAAARVLRRAKVPVMLAATKVDDDR 126

Query: 331 LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKK 368
           L S   E +       H +S   G G  +L++ I  +L    + 
Sbjct: 127 LTSDTAELWRLGLGQPHPVSGLHGRGSGDLLDAILEVLPETPRD 170



 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 14/151 (9%)

Query: 198 FLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            L + I   + +    +   +G    ++ ++G  N GKSSL N LA ++ ++V D+ GTT
Sbjct: 155 DLLDAILEVLPETPRDDFGASGAGPRRVALVGKPNVGKSSLLNKLAGEERSVVHDVAGTT 214

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK 311
            D +   +DL+G + +  DTAG+R+   +   +E     RT   +E A++ L+L + +  
Sbjct: 215 VDPVDSLVDLDGEVFRFVDTAGLRKRVKMASGMEYYASLRTSSAIEAAEVALVLIDASQP 274

Query: 312 --------KEISFPKNIDFIFIGTKSDLYST 334
                     +        + +  K DL   
Sbjct: 275 IAEQDQRVLTMVAEAGRALVILFNKWDLVDE 305


>gi|254468967|ref|ZP_05082373.1| GTP-binding protein EngA [beta proteobacterium KB13]
 gi|207087777|gb|EDZ65060.1| GTP-binding protein EngA [beta proteobacterium KB13]
          Length = 466

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 12/177 (6%)

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH-ISQGKLGEIIRNGYKIVILGHSNAGK 232
           A LDFS+    Q   +    N  + L  ++  H +    +   I + +KI ILG  NAGK
Sbjct: 129 AKLDFSKLGYQQVICTSMSHNYGIDLIVELIVHKLDGIPILNEIDDNFKIAILGKPNAGK 188

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGI 289
           S+L N+L   D  I +D+PGTT D + I+++L      + DTAGIR    +    EK  +
Sbjct: 189 STLINSLIGSDRLIASDLPGTTIDSIEIEIELNSDKYILVDTAGIRRKGKVTVKEEKFAL 248

Query: 290 KRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKSDLYSTYTEE 338
            ++    +NA+ ILL+ + +   + ++ +            I +  K DL + Y +E
Sbjct: 249 LKSLESAKNANFILLIIDSSVGITSQDQALITECLKSFKPLILLFNKWDLLNQYEKE 305



 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 19/163 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--R 278
            + I+G  N GKSSLFN L K   AIV++  G TRD       ++    +I D+ G+   
Sbjct: 3   NVAIVGRPNVGKSSLFNKLTKSKKAIVSEFEGLTRDRQVGKSVIDNLAYEIIDSGGLNFS 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
           + ++ ++ + + +T L  + ADLIL + +  S          ++   K+ D   +  K D
Sbjct: 63  KNNNALDTQILNQTNLAADEADLILFVVDYKSGLLPDDQVISKLLRKKDKDICLVINKVD 122

Query: 331 LYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSN 364
             S    + D            S     G++ ++  I   L  
Sbjct: 123 GVSDEIAKLDFSKLGYQQVICTSMSHNYGIDLIVELIVHKLDG 165


>gi|169333658|ref|ZP_02860851.1| hypothetical protein ANASTE_00042 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259652|gb|EDS73618.1| hypothetical protein ANASTE_00042 [Anaerofustis stercorihominis DSM
           17244]
          Length = 394

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 15/181 (8%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++    GE I  G    I G  NAGKSS+ NA+  +++AIV+D+ GTT D ++  ++L  
Sbjct: 3   LNDTPKGERIYIG----IFGRRNAGKSSIINAITNQNLAIVSDVKGTTTDPVSKAMELFP 58

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISF--P 317
              V I DT G+ +   + EK  I++ +  +   D+ LL+ +         K+ +     
Sbjct: 59  LGPVVIIDTPGLDDVGSLGEKR-IEKAYQVLNKTDIALLILDAEYGLTDVDKELLKLIKE 117

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLI-SSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           KNI +I +  KSD+ S   +  + +  S+ TGE ++EL   I        +K+  S   +
Sbjct: 118 KNIPYIILMNKSDILSDDKKNNEFIYVSTKTGENIKELKELIAKKAPKGNEKVIVSDLIN 177

Query: 377 K 377
           K
Sbjct: 178 K 178


>gi|122702259|emb|CAL88320.1| GTPase [Helicobacter pylori]
 gi|122702335|emb|CAL88358.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGTPKSFNISVSHNRGISALIDAVLNALN 167


>gi|99905879|gb|ABF68634.1| YphC [Helicobacter pylori]
 gi|122702729|emb|CAL88554.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|162136030|ref|YP_532152.2| GTP-binding protein EngA [Rhodopseudomonas palustris BisB18]
          Length = 460

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 123/326 (37%), Gaps = 57/326 (17%)

Query: 84  HVHGGIAVVNGILEELAKMPNLRLANPG--EFSRRAFENGKIDLLEAESLADLISSETEM 141
                IA+ + ++  +     L   +    +F+RRA +   +   ++E     I +    
Sbjct: 75  QTEAAIALADALMFVIDARAGLTPNDRAFADFARRANKPVILVANKSEGRHGEIGAMESY 134

Query: 142 QRRLSM-EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
              L     +S E         D L  +    +   D  E++DV+  S ++         
Sbjct: 135 ALGLGDPIQISAEHGEGLSDLYDALRAVMPEPDVLFD--EDDDVEGVSEEDFSTRP---- 188

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
                               ++ I+G  NAGKS++ N L  ++  + +   GTTRD +++
Sbjct: 189 -------------------IRVAIVGRPNAGKSTMINHLLGEERLLTSAEAGTTRDSISV 229

Query: 261 DLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           ++D +G   +I DTAG+R    I    EK  +      +  A++++L+ +  +K E    
Sbjct: 230 EVDYKGRQFRIFDTAGLRRRSRIEEKLEKLSVADALRAIRFAEVVVLMMDSQNKFEEQDL 289

Query: 318 KNIDFI--------FIGTKSD-------LYSTYTEEYDH-----------LISSFTGEGL 351
           +  D I            K D       L +    + DH            +S   GEG+
Sbjct: 290 RIADLIEREGRALVIAVNKWDLMGKQASLVAGLRADVDHLLPQVKGVPIVAVSGLMGEGI 349

Query: 352 EELINKIKSILSNKFKKLPFSIPSHK 377
           + L+  I+   +   +++P +  +  
Sbjct: 350 DRLMKAIEDSYAVWNRRVPTASLNRW 375



 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 18/163 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +   I+G  N GKS+LFN L  + +A+V D PG TRD       L      I DTAG+ E
Sbjct: 3   FTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGQGKLGDLEFTIIDTAGLDE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                      ++T   +  AD ++ + +  +          + +   N   I +  KS+
Sbjct: 63  GAKGSLVARMQEQTEAAIALADALMFVIDARAGLTPNDRAFADFARRANKPVILVANKSE 122

Query: 331 ---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                                IS+  GEGL +L + +++++  
Sbjct: 123 GRHGEIGAMESYALGLGDPIQISAEHGEGLSDLYDALRAVMPE 165


>gi|122702617|emb|CAL88498.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNSNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKDRAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|122702173|emb|CAL88277.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMTK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGINALIDAILRALN 167


>gi|122702563|emb|CAL88471.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122701543|emb|CAL88161.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLN 167


>gi|154253924|ref|YP_001414748.1| small GTP-binding protein [Parvibaculum lavamentivorans DS-1]
 gi|171769688|sp|A7HYV8|DER_PARL1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|154157874|gb|ABS65091.1| small GTP-binding protein [Parvibaculum lavamentivorans DS-1]
          Length = 473

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 71/200 (35%), Gaps = 34/200 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  N GKS+LFN L  K +A+V D PG TRD    +  L      I DTAG+ E
Sbjct: 3   FKVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRREGEARLGDLSFTIIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                +E      T   + +ADL LLL +  +          +I        I    K +
Sbjct: 63  AATGTLEARMRIGTERAIADADLCLLLIDARAGVTPLDKSFSQILRKSPTPVILAANKCE 122

Query: 331 ---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                                +S+  GEGL +L + +                       
Sbjct: 123 GGAGKAGRMEAYELGLGAPLPLSAEHGEGLGDLYDALAQFAKG----------------L 166

Query: 382 HLSQTVRYLEMASLNEKDCG 401
                 + +E A   E+D  
Sbjct: 167 EADDAGQAVEDALAEEQDAD 186



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 29/191 (15%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +    ++ I+G  N GKS+L N L  +D  +     G TRD + I+ +  G  VK+ DTA
Sbjct: 199 LEAPLRVAIIGRPNVGKSTLVNQLLGEDRMLTGPEAGITRDSIGIEWEWRGRRVKLWDTA 258

Query: 276 GIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIF 324
           G+R    +    EK  +  T   V  A+++++L +     E        +   +    + 
Sbjct: 259 GMRRRARVTEKLEKLSVADTLRAVRFAEVVVILLDATQPFERQDLHIADLVEQEGRGLLI 318

Query: 325 IGTKSD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
           +  K D                  L           +S+ TG G ++L+  I+ + +   
Sbjct: 319 VVNKWDMVAEPQEVLRVLKEELERLLPQIRGVPIVTLSALTGRGTDKLMPAIERVHTFWN 378

Query: 367 KKLPFSIPSHK 377
            ++P +  +  
Sbjct: 379 ARVPTARLNRW 389


>gi|56963446|ref|YP_175177.1| Era, Era/TrmE family GTP-binding protein [Bacillus clausii KSM-K16]
 gi|81822138|sp|Q5WHD9|ERA_BACSK RecName: Full=GTPase Era
 gi|56909689|dbj|BAD64216.1| Era/TrmE family GTP-binding protein Era [Bacillus clausii KSM-K16]
          Length = 303

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D P TTR+ +   L  +   +   DT GI +  
Sbjct: 13  VSIIGRPNVGKSTLLNRVIGQKIAIMSDKPQTTRNKVQGVLTRDDAQLVFMDTPGIHKPK 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    +K     +   DLIL + E ++K         E           +  K D   
Sbjct: 73  HRLGDFMMKVAKNTLREVDLILYVVEADAKFGPGEQYIIERLQETKTPVFLLINKIDKVS 132

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y + Y       IS+  G  +  L+ +I   +    +  P    +     
Sbjct: 133 PEELLKVIDLYKDRYPFAEIIPISALEGNNVPTLVEQIVEHMEEGPQYYPADQVTDHPER 192

Query: 381 YHLSQTVR 388
           + +++ +R
Sbjct: 193 FIIAELIR 200


>gi|237800048|ref|ZP_04588509.1| GTP-binding protein Der [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022903|gb|EGI02960.1| GTP-binding protein Der [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 222

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS++FN L +   AIV D+ G TRD    +   +G    + DT GI   +
Sbjct: 5   IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++++  +++ L +E AD++L L +  +          E    +N     +  K D
Sbjct: 65  HGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKID 121



 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           ++G KI I+G  N GKS+L N +  +D  IV
Sbjct: 192 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIV 222


>gi|122701493|emb|CAL88136.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I + +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122702315|emb|CAL88348.1| GTPase [Helicobacter pylori]
 gi|122702337|emb|CAL88359.1| GTPase [Helicobacter pylori]
          Length = 168

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
             + KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 67  AFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 126

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 127 EKERAYAFSSFGMPKSFNISVSHNRGISVLIDAILHAL 164


>gi|333028090|ref|ZP_08456154.1| putative GTP-binding protein EngA [Streptomyces sp. Tu6071]
 gi|332747942|gb|EGJ78383.1| putative GTP-binding protein EngA [Streptomyces sp. Tu6071]
          Length = 488

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 78/204 (38%), Gaps = 21/204 (10%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D +     E+  +  F   D+   I +   G + R    + ++G  N GKS+L N +  +
Sbjct: 17  DAEYERFMELAAEEGFDVEDVEDAIGEAGHGPLPR----LAVVGRPNVGKSTLVNRIIGR 72

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +E +D +
Sbjct: 73  REAVVEDRPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDVLGIDASVAAQAEYAIEASDAV 132

Query: 303 LLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY---------DHLISS 345
           + + +          +   +        +    K D  S   +            H +S+
Sbjct: 133 VFVVDATVGATDTDEAVVRLLRKAGKPVVLCANKVDGPSGEADAAMLWSLGLGEPHPVSA 192

Query: 346 FTGEGLEELINKIKSILSNKFKKL 369
             G G  ++++ +   L +  K  
Sbjct: 193 LHGRGTGDMLDAVLEALPDAPKDT 216



 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 85/237 (35%), Gaps = 35/237 (14%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
              + +   L   E   V     +   + +  +   +         G  I    ++ ++G
Sbjct: 173 EADAAMLWSLGLGEPHPVSALHGRGTGDMLDAVLEALPDAPKDTFGGTGIGGPRRVALIG 232

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N GKSSL N LA +D  +V +  GTTRD +   ++L G   K  DTAGIR+   + + 
Sbjct: 233 RPNVGKSSLLNKLAGEDRVVVNEQAGTTRDPVDELIELGGVTWKFVDTAGIRKRVHLQQG 292

Query: 287 EGIKRTFLE-------------VENADLILLLKEINSKKEISFPKNIDFIFIG--TKSD- 330
                +                ++ AD I        ++ ++   +     +    K D 
Sbjct: 293 ADYYASLRTAAAVEKAEVAVVLIDGADSI----SAQDQRILTMAVDAGRALVLAYNKWDT 348

Query: 331 --------LYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   L      E           IS+ TG  +E+L+  +++ L+    ++P  
Sbjct: 349 LDEERRYYLEREIERELGQVAWAPRVNISARTGRHMEKLVPALETALAGWETRVPTG 405


>gi|315923956|ref|ZP_07920184.1| GTP-binding protein [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622796|gb|EFV02749.1| GTP-binding protein [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 410

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 14/171 (8%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           +  I + +++  LGE +  G+     G  NAGKSSL NA+  + +A+V++  GTT D + 
Sbjct: 7   EGSIVATLNETPLGERVHIGF----FGRRNAGKSSLVNAVTGQAMAVVSETAGTTTDPVE 62

Query: 260 IDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------INSKK 312
             ++L     V I DT G  +   + EK  + R    ++  D+ +L+ +       + ++
Sbjct: 63  KTMELLPIGPVLIIDTPGTDDVGALGEKR-VARAREVLDRTDIAVLVVDGAVGLTADDRR 121

Query: 313 EISF--PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            ++    K + ++ +  K D+ S         +S+ TGEG+E    ++ + 
Sbjct: 122 LLALFEEKQVPYLVVMNKCDVGSARMPADSIAVSARTGEGIEAFKKRLAAF 172


>gi|302533632|ref|ZP_07285974.1| LOW QUALITY PROTEIN: ribosome-associated GTPase EngA [Streptomyces
           sp. C]
 gi|302442527|gb|EFL14343.1| LOW QUALITY PROTEIN: ribosome-associated GTPase EngA [Streptomyces
           sp. C]
          Length = 496

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 79/210 (37%), Gaps = 21/210 (10%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D     D +     E+  +  F   ++   I +   G +      + ++G  N GKS+L 
Sbjct: 6   DHGALGDAEYAEFMELAAEEGFDLEEVEGAIEEAGHGPL----PVLAVVGRPNVGKSTLV 61

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N +  +  A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +
Sbjct: 62  NRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDVLGIDASVAAQAEYAI 121

Query: 297 ENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------- 339
           E AD ++ + +          +  ++        +    K D  S   +           
Sbjct: 122 ETADAVVFVVDAKVGATDSDEAVVKLLRRAGKPVVLCANKVDGQSGEADAAYLWSLGLGM 181

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKL 369
            + +SS  G G  ++++ +  +L     + 
Sbjct: 182 PYPVSSLHGRGTGDMLDAVLEVLPEAPAQT 211



 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 85/206 (41%), Gaps = 31/206 (15%)

Query: 198 FLKNDISSHISQGKL----GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
            + + +   + +       G  I    +I ++G  N GKSSL N +A++D  +V ++ GT
Sbjct: 195 DMLDAVLEVLPEAPAQTFGGAAIGGPRRIALIGRPNVGKSSLLNKVAREDRVVVNELAGT 254

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKE--- 307
           TRD +   ++L G   K  DTAGIR+   + +        RT   VE A++ ++L +   
Sbjct: 255 TRDPVDELIELGGVTWKFVDTAGIRKKVHLQQGADYYASLRTAAAVEKAEVAVILIDTTE 314

Query: 308 ---INSKKEISFPKNIDFIFI--GTKSDLYSTYTE----------------EYDHLISSF 346
              +  ++ I+         +    K D                            +S+ 
Sbjct: 315 NISVQDQRIITMAVEAGRAIVIAYNKWDELDEERRYYLEREIETEMQQVSWAPRVNVSAK 374

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS 372
           TG  +E+L+  I++ L+    ++P  
Sbjct: 375 TGRHMEKLVPAIETALAGWETRVPTG 400


>gi|292806410|gb|ADE42335.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSTLN 167


>gi|122702423|emb|CAL88402.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISVLIDAILHAL 166


>gi|122702761|emb|CAL88570.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                 ++S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYMFSSFGIPKSFNISVSHNRGISALIDAILRALN 167


>gi|318061403|ref|ZP_07980124.1| GTP-binding protein Der [Streptomyces sp. SA3_actG]
 gi|318078001|ref|ZP_07985333.1| GTP-binding protein Der [Streptomyces sp. SA3_actF]
          Length = 488

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 79/204 (38%), Gaps = 21/204 (10%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D +     E+  +  F   D+   I +   G + R    + ++G  N GKS+L N +  +
Sbjct: 17  DAEYERFMELAAEEGFDVEDVEDAIGEAGHGPLPR----LAVVGRPNVGKSTLVNRIIGR 72

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +E +D +
Sbjct: 73  REAVVEDRPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDVLGIDASVAAQAEYAIEASDAV 132

Query: 303 LLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY---------DHLISS 345
           + + +          +   +        +    K D  S   +            H +S+
Sbjct: 133 VFVVDATVGATDTDEAVVRLLRKAGKPVVLCANKVDGPSGEADAATLWSLGLGEPHPVSA 192

Query: 346 FTGEGLEELINKIKSILSNKFKKL 369
             G G  ++++ +   L +  K+ 
Sbjct: 193 LHGRGTGDMLDAVLEALPDAPKET 216



 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 35/228 (15%)

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           L   E   V     +   + +  +   +     +   G  I    ++ ++G  N GKSSL
Sbjct: 182 LGLGEPHPVSALHGRGTGDMLDAVLEALPDAPKETFGGTGIGGPRRVALIGRPNVGKSSL 241

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N LA +D  +V +  GTTRD +   ++L G   K  DTAGIR+   + +      +   
Sbjct: 242 LNKLAGEDRVVVNEQAGTTRDPVDELIELGGVTWKFVDTAGIRKRVHLQQGADYYASLRT 301

Query: 296 -------------VENADLILLLKEINSKKEISFPKNIDFIFIG--TKSD---------L 331
                        ++ AD I     +  ++ ++   +     +    K D         L
Sbjct: 302 AAAVEKAEVAVVLIDGADSI----SVQDQRILTMAVDAGRALVLAYNKWDTLDEERRYYL 357

Query: 332 YSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 E           IS+ TG  +E+L+  +++ L+    ++P  
Sbjct: 358 EREIERELGQVAWAPRVNISARTGRHMEKLVPALETALAGWETRVPTG 405


>gi|292806642|gb|ADE42451.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKVDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|292806542|gb|ADE42401.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI  I   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIEAILRALN 167


>gi|182679273|ref|YP_001833419.1| GTP-binding protein EngA [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635156|gb|ACB95930.1| small GTP-binding protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 470

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 18/177 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS+LFN L  K +A+V D PG TRD    D  L     KI DTAG+ E
Sbjct: 2   LTIAIIGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDAKLGDLTFKIIDTAGLEE 61

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             ++ +      +T   +E AD I  L +             ++        + I  K++
Sbjct: 62  GHEETLSGRMRAQTEAAIEQADGIFFLFDARVGLTPEDRFFAQLVRRAGKPLVLIANKAE 121

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                    +            S+  GEGL +L   ++     + +    + P+ +R
Sbjct: 122 GRVGTAGAIEGFDLGLGDPVPLSAEHGEGLADLYEALRENWPEETEAPDEAGPAEER 178



 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 36/205 (17%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +    +I ++G  NAGKS+L N L  ++  +     G TRD + +DL+  G  +KI DTA
Sbjct: 192 LTKPLRIAVVGRPNAGKSTLLNRLLGEERLLTGPEAGLTRDSIGLDLEWRGRKMKIFDTA 251

Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIF 324
           G+R   + +D +EK         V  A+++++L +      K++++       +    + 
Sbjct: 252 GLRRRAKIEDKLEKLAAADALRAVRFAEVVVVLLDATIPFEKQDLTIADLVEREGRALVI 311

Query: 325 IGTKSDLYSTYTEE----------------------YDHLISSFTGEGLEELINKIKSIL 362
              K DL      E                          +S+ T EGL+ L+  I  + 
Sbjct: 312 ALNKWDLIGADDAERAARLTLLREEAGRLLPQVKGTPVVPVSATTAEGLDRLMAAIDKVH 371

Query: 363 SNKFKKLPFSIPSHKRHLY-HLSQT 386
               K++  +     R L   L QT
Sbjct: 372 VIWNKRI--ATARLNRWLEGALEQT 394


>gi|122700657|emb|CAL87917.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSAL 166


>gi|18075557|emb|CAD11174.1| GTP-binding protein [Helicobacter pylori]
 gi|122700659|emb|CAL87918.1| GTPase [Helicobacter pylori]
 gi|122700771|emb|CAL87974.1| GTPase [Helicobacter pylori]
 gi|122700915|emb|CAL88046.1| GTPase [Helicobacter pylori]
 gi|122701325|emb|CAL88052.1| GTPase [Helicobacter pylori]
 gi|122701383|emb|CAL88081.1| GTPase [Helicobacter pylori]
 gi|122701549|emb|CAL88164.1| GTPase [Helicobacter pylori]
 gi|122701561|emb|CAL88170.1| GTPase [Helicobacter pylori]
 gi|122701705|emb|CAL88242.1| GTPase [Helicobacter pylori]
 gi|122702473|emb|CAL88427.1| GTPase [Helicobacter pylori]
 gi|122702559|emb|CAL88469.1| GTPase [Helicobacter pylori]
 gi|122702651|emb|CAL88515.1| GTPase [Helicobacter pylori]
 gi|122702659|emb|CAL88519.1| GTPase [Helicobacter pylori]
 gi|122702723|emb|CAL88551.1| GTPase [Helicobacter pylori]
 gi|122702775|emb|CAL88577.1| GTPase [Helicobacter pylori]
 gi|122702817|emb|CAL88598.1| GTPase [Helicobacter pylori]
 gi|122702861|emb|CAL88620.1| GTPase [Helicobacter pylori]
 gi|242255846|gb|ACS88907.1| GTPase [Helicobacter pylori]
 gi|242255942|gb|ACS88955.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|289548419|ref|YP_003473407.1| GTP-binding protein Era [Thermocrinis albus DSM 14484]
 gi|289182036|gb|ADC89280.1| GTP-binding protein Era [Thermocrinis albus DSM 14484]
          Length = 302

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 73/194 (37%), Gaps = 27/194 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N L    V+IV+  PGTTR  +    ++     +   DT GI   
Sbjct: 6   VAIVGKPNVGKSTLLNNLIGTKVSIVSPKPGTTRIRVLGVKNIPNEAQIVFLDTPGIYRP 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISF-------PKNIDFIFIGTKS 329
            D + +  + +    +++AD+IL + +         E+ F        K+     +  K 
Sbjct: 66  RDALGEAMVSQAATSLQDADVILFMIDAEDGWRQDDEMVFNTYIKQYAKDKPVFLVINKV 125

Query: 330 D-------LYSTYTEEYDHLI--------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D       L     E  D           S+  G  L+EL+  I   L       P  + 
Sbjct: 126 DKVGPVDELLPFVKEITDQHPEFREVIPISALKGYNLDELLKTIVKYLPEGEPLFPEEMV 185

Query: 375 SHKRHLYHLSQTVR 388
           +        ++ +R
Sbjct: 186 TDLPFKLLAAEIIR 199


>gi|242255916|gb|ACS88942.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGIGALIDAILSVL 166


>gi|122702633|emb|CAL88506.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGVSTLIDAILSALN 167


>gi|122702261|emb|CAL88321.1| GTPase [Helicobacter pylori]
 gi|122702271|emb|CAL88326.1| GTPase [Helicobacter pylori]
 gi|122702339|emb|CAL88360.1| GTPase [Helicobacter pylori]
 gi|122702375|emb|CAL88378.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGTPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122701555|emb|CAL88167.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKASQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILNALN 167


>gi|317453511|emb|CBL87865.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|291522460|emb|CBK80753.1| GTP-binding protein Era [Coprococcus catus GD/7]
          Length = 300

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 81/214 (37%), Gaps = 22/214 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+   ++G  N GKS+L N L  + +AI ++ P TTR+ +      E   +   DT 
Sbjct: 5   YKSGF-ATLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTSEEGQIVFVDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGT 327
           GI +  + + +  +      +   D+IL L E  +          E         I +  
Sbjct: 64  GIHKAKNKLGEYMVTVAERTLSEVDVILWLVEPTTFIGAGEQHIAEQLRKTKTPIILVIN 123

Query: 328 KSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D             Y +  D       S+  G+  E+LI  I   L    +       
Sbjct: 124 KIDTVKREEILKSIDAYKDICDFAEIVPCSALKGDNTEDLIKVIMKYLPYGPQFYDEDTV 183

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           + +     +++ +R   + SLNE+      ++ +
Sbjct: 184 TDQPERQIVAELIREKALRSLNEEVPHGIAVSID 217


>gi|122702829|emb|CAL88604.1| GTPase [Helicobacter pylori]
 gi|195954197|gb|ACG58804.1| YphC [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  TLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNHNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSAL 166


>gi|122702589|emb|CAL88484.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+      L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKTALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|122702833|emb|CAL88606.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSAL 166


>gi|122702195|emb|CAL88288.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   + S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSLPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAILNALN 167


>gi|122702125|emb|CAL88253.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122702157|emb|CAL88269.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S+L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSVL 166


>gi|17826782|emb|CAD18957.1| GTP-binding protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILRALN 167


>gi|296164609|ref|ZP_06847176.1| ribosome-associated GTPase EngA [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295900028|gb|EFG79467.1| ribosome-associated GTPase EngA [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 466

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 110/288 (38%), Gaps = 39/288 (13%)

Query: 119 ENGKIDLLEAESLADLISSE------TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           E   + +  A+++  ++ +        E   R+ +    G+   L    +D     +   
Sbjct: 100 EQASVAMRTADAVILVVDASVGATSADEAAARILLRS--GKPVFLAANKVDS---EKGEA 154

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAG 231
           +A   +S      +  S      +  L +++ + + +         G + + ++G  N G
Sbjct: 155 DAAALWSLGLGEPHAVSAMHGRGVADLLDEVLAALPEVSEAAPAPGGPRRVALVGKPNVG 214

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KSSL N LA    ++V D+ GTT D +   ++L G + +  DTAG+R         E   
Sbjct: 215 KSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRRKVGQASGHEFYA 274

Query: 289 IKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY- 339
             RT   ++ A+++++L + +            +        +    K DL      E  
Sbjct: 275 SVRTHSAIDAAEVVVVLIDASQPLTEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRELL 334

Query: 340 ---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                             IS+ TG  +++L+  +++ L++   ++P  
Sbjct: 335 EREIDRELVQLRWAQRVNISAHTGRAVQKLVPAMETALASWDMRIPTG 382



 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 19/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D    G    + DT G     
Sbjct: 32  VAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWTGRRFVVQDTGGWEPDA 91

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
             +++   ++  + +  AD ++L+ + +        +   I             K D   
Sbjct: 92  KGLQQLVAEQASVAMRTADAVILVVDASVGATSADEAAARILLRSGKPVFLAANKVDSEK 151

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  L+S    E  H +S+  G G+ +L++++ + L    +  P 
Sbjct: 152 GEADAAALWSLGLGE-PHAVSAMHGRGVADLLDEVLAALPEVSEAAPA 198


>gi|122701447|emb|CAL88113.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DL+L + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLVLYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDR 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRAL 166


>gi|122702273|emb|CAL88327.1| GTPase [Helicobacter pylori]
          Length = 168

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNRLAKEKIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
             + KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 67  AFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 126

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 127 EKERAYAFSSFGMPKSFNISVSHNRGISVLIDAILHAL 164


>gi|42783426|ref|NP_980673.1| GTP-binding protein Era [Bacillus cereus ATCC 10987]
 gi|49481311|ref|YP_038355.1| GTP-binding protein Era [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52141202|ref|YP_085626.1| GTP-binding protein Era [Bacillus cereus E33L]
 gi|118479469|ref|YP_896620.1| GTP-binding protein Era [Bacillus thuringiensis str. Al Hakam]
 gi|196034381|ref|ZP_03101790.1| GTP-binding protein Era [Bacillus cereus W]
 gi|196039186|ref|ZP_03106492.1| GTP-binding protein Era [Bacillus cereus NVH0597-99]
 gi|196046320|ref|ZP_03113546.1| GTP-binding protein Era [Bacillus cereus 03BB108]
 gi|206978417|ref|ZP_03239286.1| GTP-binding protein Era [Bacillus cereus H3081.97]
 gi|217961790|ref|YP_002340360.1| GTP-binding protein Era [Bacillus cereus AH187]
 gi|218905437|ref|YP_002453271.1| GTP-binding protein Era [Bacillus cereus AH820]
 gi|222097745|ref|YP_002531802.1| gtp-binding protein era [Bacillus cereus Q1]
 gi|225866281|ref|YP_002751659.1| GTP-binding protein Era [Bacillus cereus 03BB102]
 gi|254721891|ref|ZP_05183680.1| GTP-binding protein Era [Bacillus anthracis str. A1055]
 gi|301055792|ref|YP_003794003.1| GTP-binding protein [Bacillus anthracis CI]
 gi|42739355|gb|AAS43281.1| GTP-binding protein Era [Bacillus cereus ATCC 10987]
 gi|49332867|gb|AAT63513.1| GTP-binding protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51974671|gb|AAU16221.1| GTP-binding protein [Bacillus cereus E33L]
 gi|118418694|gb|ABK87113.1| GTP-binding protein [Bacillus thuringiensis str. Al Hakam]
 gi|195992923|gb|EDX56882.1| GTP-binding protein Era [Bacillus cereus W]
 gi|196022790|gb|EDX61471.1| GTP-binding protein Era [Bacillus cereus 03BB108]
 gi|196029813|gb|EDX68414.1| GTP-binding protein Era [Bacillus cereus NVH0597-99]
 gi|206743373|gb|EDZ54811.1| GTP-binding protein Era [Bacillus cereus H3081.97]
 gi|217063790|gb|ACJ78040.1| GTP-binding protein Era [Bacillus cereus AH187]
 gi|218535830|gb|ACK88228.1| GTP-binding protein Era [Bacillus cereus AH820]
 gi|221241803|gb|ACM14513.1| GTP-binding protein [Bacillus cereus Q1]
 gi|225786790|gb|ACO27007.1| GTP-binding protein Era [Bacillus cereus 03BB102]
 gi|300377961|gb|ADK06865.1| GTP-binding protein [Bacillus cereus biovar anthracis str. CI]
 gi|324328204|gb|ADY23464.1| GTPase Era [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 301

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 24/196 (12%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   D
Sbjct: 3   RKGYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPK----NIDFIFI 325
           T GI +    +    +K     ++  D++L +          +E    K          +
Sbjct: 63  TPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLV 122

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L   Y + +D      IS+  G  +E LI  IK  L    +  P +
Sbjct: 123 INKIDQVHPEQLLELIDQYRKLHDFAEIVPISALDGNNVEALIGTIKKYLPEGPQYYPDN 182

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +++ +R
Sbjct: 183 QVTDHPERFIIAELIR 198


>gi|110802047|ref|YP_699296.1| GTP-binding protein Era [Clostridium perfringens SM101]
 gi|168204746|ref|ZP_02630751.1| GTP-binding protein Era [Clostridium perfringens E str. JGS1987]
 gi|168208717|ref|ZP_02634342.1| GTP-binding protein Era [Clostridium perfringens B str. ATCC 3626]
 gi|168212948|ref|ZP_02638573.1| GTP-binding protein Era [Clostridium perfringens CPE str. F4969]
 gi|168215642|ref|ZP_02641267.1| GTP-binding protein Era [Clostridium perfringens NCTC 8239]
 gi|169343587|ref|ZP_02864586.1| GTP-binding protein Era [Clostridium perfringens C str. JGS1495]
 gi|182624448|ref|ZP_02952232.1| GTP-binding protein Era [Clostridium perfringens D str. JGS1721]
 gi|122956577|sp|Q0SRG1|ERA_CLOPS RecName: Full=GTPase Era
 gi|110682548|gb|ABG85918.1| GTP-binding protein Era [Clostridium perfringens SM101]
 gi|169298147|gb|EDS80237.1| GTP-binding protein Era [Clostridium perfringens C str. JGS1495]
 gi|170663559|gb|EDT16242.1| GTP-binding protein Era [Clostridium perfringens E str. JGS1987]
 gi|170713142|gb|EDT25324.1| GTP-binding protein Era [Clostridium perfringens B str. ATCC 3626]
 gi|170715652|gb|EDT27834.1| GTP-binding protein Era [Clostridium perfringens CPE str. F4969]
 gi|177910451|gb|EDT72828.1| GTP-binding protein Era [Clostridium perfringens D str. JGS1721]
 gi|182382082|gb|EDT79561.1| GTP-binding protein Era [Clostridium perfringens NCTC 8239]
          Length = 296

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 95/214 (44%), Gaps = 25/214 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ I I+G  N GKS+L N L  + ++IV++ P TTR+ +   L  + Y +   DT G
Sbjct: 3   KSGF-ITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNIQTILTGDDYQMIFVDTPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNI--DFIFIGTK 328
           I +    + +  +      +++ DL+L L           K  I   KN     IF+  K
Sbjct: 62  IHKPKHKLGEYMVNSATDSIKDVDLVLFLSNPCEEVGRGDKFIIEQLKNQKAPVIFVLNK 121

Query: 329 SDLYST---------YTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D  S          +++EYD      IS+   +  ++L+  +   L    K  P  + +
Sbjct: 122 VDESSPEKVAKTLELFSKEYDFAEMIPISAMKAKNTDKLLELMVKYLPEGPKYYPDDMIT 181

Query: 376 HKRHLYHLSQTVRYLEMASLNE---KDCGLDIIA 406
             +  + +++ VR   + +L++       +D+I 
Sbjct: 182 DVQERFVVAEIVREKALKNLSQEVPHGIAVDVIQ 215


>gi|90105796|gb|ABD87833.1| Small GTP-binding protein domain [Rhodopseudomonas palustris
           BisB18]
          Length = 465

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 123/326 (37%), Gaps = 57/326 (17%)

Query: 84  HVHGGIAVVNGILEELAKMPNLRLANPG--EFSRRAFENGKIDLLEAESLADLISSETEM 141
                IA+ + ++  +     L   +    +F+RRA +   +   ++E     I +    
Sbjct: 80  QTEAAIALADALMFVIDARAGLTPNDRAFADFARRANKPVILVANKSEGRHGEIGAMESY 139

Query: 142 QRRLSM-EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
              L     +S E         D L  +    +   D  E++DV+  S ++         
Sbjct: 140 ALGLGDPIQISAEHGEGLSDLYDALRAVMPEPDVLFD--EDDDVEGVSEEDFSTRP---- 193

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
                               ++ I+G  NAGKS++ N L  ++  + +   GTTRD +++
Sbjct: 194 -------------------IRVAIVGRPNAGKSTMINHLLGEERLLTSAEAGTTRDSISV 234

Query: 261 DLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           ++D +G   +I DTAG+R    I    EK  +      +  A++++L+ +  +K E    
Sbjct: 235 EVDYKGRQFRIFDTAGLRRRSRIEEKLEKLSVADALRAIRFAEVVVLMMDSQNKFEEQDL 294

Query: 318 KNIDFI--------FIGTKSD-------LYSTYTEEYDH-----------LISSFTGEGL 351
           +  D I            K D       L +    + DH            +S   GEG+
Sbjct: 295 RIADLIEREGRALVIAVNKWDLMGKQASLVAGLRADVDHLLPQVKGVPIVAVSGLMGEGI 354

Query: 352 EELINKIKSILSNKFKKLPFSIPSHK 377
           + L+  I+   +   +++P +  +  
Sbjct: 355 DRLMKAIEDSYAVWNRRVPTASLNRW 380



 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 18/163 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +   I+G  N GKS+LFN L  + +A+V D PG TRD       L      I DTAG+ E
Sbjct: 8   FTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGQGKLGDLEFTIIDTAGLDE 67

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                      ++T   +  AD ++ + +  +          + +   N   I +  KS+
Sbjct: 68  GAKGSLVARMQEQTEAAIALADALMFVIDARAGLTPNDRAFADFARRANKPVILVANKSE 127

Query: 331 ---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                                IS+  GEGL +L + +++++  
Sbjct: 128 GRHGEIGAMESYALGLGDPIQISAEHGEGLSDLYDALRAVMPE 170


>gi|47567864|ref|ZP_00238572.1| GTP-binding protein Era [Bacillus cereus G9241]
 gi|47555541|gb|EAL13884.1| GTP-binding protein Era [Bacillus cereus G9241]
          Length = 301

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 24/196 (12%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   D
Sbjct: 3   RKGYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPK----NIDFIFI 325
           T GI +    +    +K     ++  D++L +          +E    K          +
Sbjct: 63  TPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLV 122

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L   Y + +D      IS+  G  +E LI  IK  L    +  P +
Sbjct: 123 INKIDQVHPEQLLELIDQYRKLHDFAEIVPISALDGNNVESLIGTIKKYLPEGPQYYPDN 182

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +++ +R
Sbjct: 183 QVTDHPERFIIAELIR 198


>gi|292806626|gb|ADE42443.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + S+L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSVLN 167


>gi|122702215|emb|CAL88298.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGAPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|122700861|emb|CAL88019.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700593|emb|CAL87885.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|242255902|gb|ACS88935.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINSNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I  +L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVLN 167


>gi|242255838|gb|ACS88903.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|237723395|ref|ZP_04553876.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229447917|gb|EEO53708.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 396

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 18/170 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I   G  N+GKSSL NAL  +D A+V+D PGTT D+++  ++++G       DT G  
Sbjct: 12  LHIAFFGRRNSGKSSLINALTGQDTALVSDTPGTTTDLVSKAMEIQGIGPCLFIDTPGFD 71

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISF--PKNIDFIFIGTKSDL- 331
           +  ++ E   I RT   +E  D+ LLL    +    K+ ++    KNI  I +  K D+ 
Sbjct: 72  DEGELGELR-ISRTLKAIEKTDIALLLCGDTTFSYEKEMLALLKEKNIPVIPVLNKIDIR 130

Query: 332 -----YSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 +TY EE       LIS+    G+E++   I   L + F +   +
Sbjct: 131 ENSDSLATYIEEECKIRPLLISAKEKTGIEQIRQAILEKLPSDFGQQSIT 180


>gi|145332365|ref|NP_001078139.1| emb2738 (embryo defective 2738); GTP binding [Arabidopsis thaliana]
 gi|332641626|gb|AEE75147.1| GTP-binding protein [Arabidopsis thaliana]
          Length = 587

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 15/149 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL ++D  IV+ + GTTRD +  +    +G   ++ DTAGIR+ 
Sbjct: 371 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 430

Query: 281 DDI------VEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDFI-----FIG 326
             +       E   + R F  +  +D++ L+ E  +   ++++   + I+        + 
Sbjct: 431 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVVV 490

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            K D      +E          E L  L 
Sbjct: 491 NKWDTIPNKNQETAAHYEDDVREKLRSLK 519



 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 30/120 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           ++ I+G  N GKS+LFN L  ++ AIV D PG TRD L            + DT G+   
Sbjct: 160 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGVMTV 219

Query: 278 --------------------------RETDDIVEKEGI-KRTFLEVENADLILLLKEINS 310
                                     RE         I K+    V+ + +I+ + +  +
Sbjct: 220 SKSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVDGQA 279


>gi|122702329|emb|CAL88355.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYTFSSFGTPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122702309|emb|CAL88345.1| GTPase [Helicobacter pylori]
 gi|122702409|emb|CAL88395.1| GTPase [Helicobacter pylori]
          Length = 168

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
             + KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 67  AFLSKEIKSFNLKAAQMSDLILYVVDGKLIPSDEDIKLFREVFKINPNCFLVINKIDNDK 126

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 127 EKERTYAFSSFGMPKSFNISVSHNRGISVLIDAILHAL 164


>gi|122702297|emb|CAL88339.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERSYAFSSFGVPKSFNISVSHNRGISALIDAVLDALN 167


>gi|292806538|gb|ADE42399.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAREKIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122702843|emb|CAL88611.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  L++ I + L+
Sbjct: 129 EKERTYAFSSFGMPKSFNISVSHNRGISALVDAILNALN 167


>gi|122702377|emb|CAL88379.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLDALN 167


>gi|122702879|emb|CAL88629.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  TLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINSNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I ++L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILNVLN 167


>gi|114328959|ref|YP_746116.1| GTP-binding protein EngA [Granulibacter bethesdensis CGDNIH1]
 gi|114317133|gb|ABI63193.1| GTP-binding protein [Granulibacter bethesdensis CGDNIH1]
          Length = 483

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 19/175 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G  N GKS+LFN L  + +A+V D PG TRD    +  L G LVK+ DTAG+ E  
Sbjct: 22  VAIAGRPNVGKSTLFNRLVGRRMALVADTPGVTRDRKEAEAMLRGRLVKLIDTAGLEEAP 81

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D +     + +   V  ADL++ + +  S               +N   + +  K++  
Sbjct: 82  QDTIAGRMRQSSETAVSQADLVVFVVDARSGITPADTHFASWLRRQNRPVLLVTNKAEAR 141

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
               E  +            S+  G G+ +L+ +I   LS    + P  +P  KR
Sbjct: 142 GAGAEALEAYRLGLGDPLAVSAEHGLGIADLMREIADRLSTDADR-PSDMPKRKR 195



 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 77/171 (45%), Gaps = 17/171 (9%)

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           AD   ++ +   +   ++   +    +++  + + QG          K+ I+G  NAGKS
Sbjct: 177 ADRLSTDADRPSDMPKRKRRGEAEAWEDE-ENIVEQGPP-----KPLKLAIVGRPNAGKS 230

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIK 290
           +L N L  +D  I    PG TRD +++ L  +   +++ DTAG+R     D+ +EK  + 
Sbjct: 231 TLLNRLLGEDRVITGPEPGLTRDSISVTLSDDIGEIELVDTAGLRRRARIDESLEKMSVS 290

Query: 291 RTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTKSDLYS 333
            +   ++ A++++L  +      ++++   +         +   TK D   
Sbjct: 291 ASIEALKMAEIVVLAVDATEGLHEQDLQIARLVEREGRGAVLALTKWDAVE 341


>gi|18075593|emb|CAD11192.1| GTP-binding protein [Helicobacter pylori]
 gi|99905869|gb|ABF68629.1| YphC [Helicobacter pylori]
 gi|122700765|emb|CAL87971.1| GTPase [Helicobacter pylori]
 gi|122700825|emb|CAL88001.1| GTPase [Helicobacter pylori]
 gi|122701713|emb|CAL88246.1| GTPase [Helicobacter pylori]
 gi|122701715|emb|CAL88247.1| GTPase [Helicobacter pylori]
 gi|122702333|emb|CAL88357.1| GTPase [Helicobacter pylori]
 gi|122702499|emb|CAL88440.1| GTPase [Helicobacter pylori]
 gi|122702553|emb|CAL88466.1| GTPase [Helicobacter pylori]
 gi|122702679|emb|CAL88529.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|325124482|gb|ADY84005.1| GTP-binding protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 469

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 112/278 (40%), Gaps = 38/278 (13%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 73  EQSKTAINEADIIIFVVDARAGLLASDEQIARELRTL-GKKIYLVANKVDGVHAEAALVE 131

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAG 231
              L   E   V     + +   +  +  ++          E  ++ G ++ I+G  N G
Sbjct: 132 FYKLGMGEPLQVAASHGRGIQQMLEDVLAEVP---EDENPEEHDKDTGLRLAIIGRPNVG 188

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KS+L N L  +D  +  D PGTTRD + I  + EG    + DTAG+R     D+++EK  
Sbjct: 189 KSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVRRKGKVDEMIEKFS 248

Query: 289 IKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEEY- 339
           I +T   +++A +++++ +      ++++     +       +    K D  S Y  +  
Sbjct: 249 IVKTLQAMKDAHVVVVVVDAREGIVEQDLHLIGYALEAGRAMVIAINKWDNMSEYDRKQC 308

Query: 340 ---------------DHLISSFTGEGLEELINKIKSIL 362
                           HLIS+  G G+ +L   I    
Sbjct: 309 KLDVERRFDFIPWAKIHLISALHGTGVGDLYPSIHRAY 346



 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E++
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGESE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD--- 330
             ++    +++   +  AD+I+ + +  +    S  +              +  K D   
Sbjct: 65  GGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGVH 124

Query: 331 ----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
               L   Y         +++  G G+++++  + + +        
Sbjct: 125 AEAALVEFYKLGMGEPLQVAASHGRGIQQMLEDVLAEVPEDENPEE 170


>gi|122702497|emb|CAL88439.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILDTLN 167


>gi|122701545|emb|CAL88162.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I + L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNAL 166


>gi|122701617|emb|CAL88198.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDSKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|292806562|gb|ADE42411.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNHLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRALN 167


>gi|293610300|ref|ZP_06692601.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827532|gb|EFF85896.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 469

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 112/278 (40%), Gaps = 38/278 (13%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 73  EQSKTAINEADIIIFVVDARAGLLASDEQIARELRTL-GKKIYLVANKVDGVHAEAALVE 131

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAG 231
              L   E   V     + V   +  +  ++          E  ++ G ++ I+G  N G
Sbjct: 132 FYKLGMGEPLQVAATHGRGVQQMLEDVLAEVP---EDENPEEHDKDTGLRLAIIGRPNVG 188

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KS+L N L  +D  +  D PGTTRD + I  + EG    + DTAG+R     D+++EK  
Sbjct: 189 KSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVRRKGKVDEMIEKFS 248

Query: 289 IKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEEY- 339
           I +T   +++A +++++ +      ++++     +       +    K D  S Y  +  
Sbjct: 249 IVKTLQAMKDAHVVVVVVDAREGIVEQDLHLIGYALEAGRAMVIAINKWDNMSEYDRKQC 308

Query: 340 ---------------DHLISSFTGEGLEELINKIKSIL 362
                           HLIS+  G G+ +L   I    
Sbjct: 309 KLDVERRFDFIPWAKIHLISALHGTGVGDLYPSIHRAY 346



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E++
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGESE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
             ++    +++   +  AD+I+ + +  +    S  +              +  K D
Sbjct: 65  GGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVD 121


>gi|122702791|emb|CAL88585.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGTPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700907|emb|CAL88042.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERTYAFSSFGMPKSFNISVSHNRGISALIDAVLSAL 166


>gi|122700715|emb|CAL87946.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILDTLN 167


>gi|122700665|emb|CAL87921.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERIYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|49529777|emb|CAG67489.1| putative GTP-binding protein EngA [Acinetobacter sp. ADP1]
          Length = 478

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 112/277 (40%), Gaps = 36/277 (12%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 82  EQSKTAIHEADIIIFVVDARAGLLASDEQIAREIRSL-GKKVYLVANKVDGVHAEAAVVE 140

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
              L F E   V     + V   +  +  D+    +     +    G ++ I+G  N GK
Sbjct: 141 FYKLGFGEPLHVAASHGRGVAQMLEDVLVDVPEDENPEDHDKAT--GLRLAIIGRPNVGK 198

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGI 289
           S+L N L  ++  +  D PGTTRD + I  + +G    + DTAG+R     D+++EK  +
Sbjct: 199 STLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVRRKGKVDEMIEKFSV 258

Query: 290 KRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEEY-- 339
            +T   +++A +++++ +      ++++     +       +    K D  + Y  +   
Sbjct: 259 VKTLQAMKDAHVVVVVVDAREGIVEQDLHLIGYALEAGRAMVIAINKWDNMTEYDRKQCK 318

Query: 340 --------------DHLISSFTGEGLEELINKIKSIL 362
                          HLIS+  G G+ EL   I    
Sbjct: 319 LDVERRFDFIPWAKIHLISALHGTGVGELYPSIHRAY 355



 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E +
Sbjct: 14  IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFIVVDTGGIGEGE 73

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
             ++    +++   +  AD+I+ + +  +    S  +              +  K D
Sbjct: 74  AGIDAYMAEQSKTAIHEADIIIFVVDARAGLLASDEQIAREIRSLGKKVYLVANKVD 130


>gi|292806582|gb|ADE42421.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERTYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|226323780|ref|ZP_03799298.1| hypothetical protein COPCOM_01555 [Coprococcus comes ATCC 27758]
 gi|225207964|gb|EEG90318.1| hypothetical protein COPCOM_01555 [Coprococcus comes ATCC 27758]
          Length = 298

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 81/198 (40%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  +   +   DT GI +  
Sbjct: 10  VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTDEGQIVFVDTPGIHKAK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKNI---DFIFIGTKSD--- 330
           + +    +      +   D++L L E ++     ++ I           + +  K+D   
Sbjct: 70  NKLGTYMVNVAERTLNEVDVVLWLVEPSTFIGAGEQHIVQQLGKVTTPVVLVINKADTVK 129

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                   + Y E Y       +S+ TGE  +EL+  I   L    +       + +   
Sbjct: 130 KEDILPCIAKYNEVYQFADIVPVSARTGENTDELLKVIMKYLPYGPQFYDEDTITDQPER 189

Query: 381 YHLSQTVRYLEMASLNEK 398
             +++ +R   +  LNE+
Sbjct: 190 QIVAELIREKALHCLNEE 207


>gi|122702459|emb|CAL88420.1| GTPase [Helicobacter pylori]
 gi|292806608|gb|ADE42434.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122702255|emb|CAL88318.1| GTPase [Helicobacter pylori]
          Length = 168

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
             + KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 67  AFLSKEIKAFNLKAAQMSDLILYVVDGKLIPSDEDIKLFREVFKINPNCFLVINKIDNDK 126

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 127 EKERAYAFSSFGMPKSFNISVSHNRGISVLIDAILHAL 164


>gi|122701509|emb|CAL88144.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHKVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122701583|emb|CAL88181.1| GTPase [Helicobacter pylori]
 gi|122702269|emb|CAL88325.1| GTPase [Helicobacter pylori]
 gi|292806628|gb|ADE42444.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806638|gb|ADE42449.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700829|emb|CAL88003.1| GTPase [Helicobacter pylori]
 gi|122700843|emb|CAL88010.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700739|emb|CAL87958.1| GTPase [Helicobacter pylori]
 gi|122702841|emb|CAL88610.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|110798867|ref|YP_696695.1| GTP-binding protein Era [Clostridium perfringens ATCC 13124]
 gi|123148605|sp|Q0TNU5|ERA_CLOP1 RecName: Full=GTPase Era
 gi|110673514|gb|ABG82501.1| GTP-binding protein Era [Clostridium perfringens ATCC 13124]
          Length = 296

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 25/214 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ I I+G  N GKS+L N L  + ++IV++ P TTR+ +   L  E Y +   DT G
Sbjct: 3   KSGF-ITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNIQTILTGEDYQMIFVDTPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNI--DFIFIGTK 328
           I +    + +  +      +++ DL+L L           K  I   KN     IF+  K
Sbjct: 62  IHKPKHKLGEYMVNSATDSIKDVDLVLFLSNPCEEVGRGDKFIIEQLKNQKAPVIFVLNK 121

Query: 329 SDLYST---------YTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D  S          +++EYD      IS+   +  ++L+  +   L    K  P  + +
Sbjct: 122 VDESSPEKVAKTLELFSKEYDFAEMIPISAMKAKNTDKLLELMVKYLPEGPKYYPDDMIT 181

Query: 376 HKRHLYHLSQTVRYLEMASLNE---KDCGLDIIA 406
             +  + +++ VR   + +L++       +D+I 
Sbjct: 182 DVQERFVVAEIVREKALKNLSQEVPHGIAVDVIQ 215


>gi|292806478|gb|ADE42369.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806508|gb|ADE42384.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILSALN 167


>gi|122701473|emb|CAL88126.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + S L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAVLSALN 167


>gi|122700769|emb|CAL87973.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILRALN 167


>gi|292806418|gb|ADE42339.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILRALN 167


>gi|242255918|gb|ACS88943.1| GTPase [Helicobacter pylori]
 gi|242255920|gb|ACS88944.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINSNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILNALN 167


>gi|122702301|emb|CAL88341.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYTFSSFGTPKSFNISVSHNRGISALIDAVLDALN 167


>gi|122702129|emb|CAL88255.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAFAFSSFGMPKSFSISVSHNRGISALIDAILSALN 167


>gi|33240804|ref|NP_875746.1| GTP-binding protein Era [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33238333|gb|AAQ00399.1| GTPase, Era homolog [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 314

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 24/218 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ + ++G  N GKS+L N    + VAI + +  TTR+ L   L +    +   D
Sbjct: 9   EGFRSGF-VALIGRPNVGKSTLINQFVGEKVAITSPVAQTTRNRLRAILTINKAQLVFVD 67

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFI 325
           T GI +   ++ +  +  +   +   D ILL+ + N            +   +NI    +
Sbjct: 68  TPGIHKPHHLLGERLVNTSKKVIGEVDSILLIFDGNEPPGSGDSYIVKLLKGQNIPVTIV 127

Query: 326 GTKSDLYST-----YTEEYD----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             K DL +        +EY              S+  G+G + LI KI S L       P
Sbjct: 128 LNKWDLVTENQRTDRIKEYISFFNNTGWNFFCCSAINGKGCDGLIQKISSTLPVGPLLYP 187

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
             + S +     + + +R   + +  E+      ++ +
Sbjct: 188 SGVTSDQPEEILMRELIREQVLLNTREEIPHSVAVSID 225


>gi|84496370|ref|ZP_00995224.1| GTP-binding protein EngA [Janibacter sp. HTCC2649]
 gi|84383138|gb|EAP99019.1| GTP-binding protein EngA [Janibacter sp. HTCC2649]
          Length = 497

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 105/271 (38%), Gaps = 32/271 (11%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +  ++ +  + Q  + +   SG+   L    +D     R+  +A   ++         S 
Sbjct: 147 VDAVVGATDDDQNVVKLLRRSGKPVILVANKVD---DQRTEADAAALWNLGLGQPWPVSA 203

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVT 248
                   + + I + +         + G   ++ +LG  N GKSS+ N LA  +  +V 
Sbjct: 204 LHGRGSGDVLDAILAVLPDKSAVSAYQRGGPRRVALLGRPNVGKSSMLNKLAGSERVVVD 263

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLL 305
           D+ GTTRD +   ++L G   +  DTAGIR         +     RT   +E A++ ++L
Sbjct: 264 DVAGTTRDPVDEFIELGGKTWRFVDTAGIRRRVHQTRGADFYASLRTQTALEKAEVAVVL 323

Query: 306 KEIN---SKKEISFPK-----NIDFIFIGTKSDLYSTYTEEY----------------DH 341
            + +   +++++   +         +    K DL       Y                  
Sbjct: 324 VDASEAITEQDVRVIQQVVDSGRALVIAYNKWDLTDEERRHYLAREIERDLVQIPWAPHV 383

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            +S+ TG  ++ L+  +++ L +   ++P  
Sbjct: 384 NVSAATGRHMDRLVPALETSLESWDYRVPTG 414



 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 17/154 (11%)

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           N GKS+L N +  +  A+V D+PG TRD +  D +  G    + DT G       +    
Sbjct: 70  NVGKSTLVNRIIGRREAVVEDVPGVTRDRVAYDAEWTGTNFTLVDTGGWSVDAKGIHLRV 129

Query: 289 IKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSDLYSTYTEEYD 340
            ++  + VE AD +L + +       + +  +   +      I +  K D   T  +   
Sbjct: 130 AEQAEIAVELADAVLFVVDAVVGATDDDQNVVKLLRRSGKPVILVANKVDDQRTEADAAA 189

Query: 341 HLI---------SSFTGEGLEELINKIKSILSNK 365
                       S+  G G  ++++ I ++L +K
Sbjct: 190 LWNLGLGQPWPVSALHGRGSGDVLDAILAVLPDK 223


>gi|317969119|ref|ZP_07970509.1| GTP-binding protein Era-like protein [Synechococcus sp. CB0205]
          Length = 327

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 22/200 (11%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           G+  E  R+G+ + ++G  N GKS+L N L  + VAI + +  TTR+ L   L      +
Sbjct: 28  GQSPEGFRSGF-VALVGRPNVGKSTLMNQLVGEKVAITSPVAQTTRNRLRAILTTPTAQL 86

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNID 321
            + DT GI +   ++ +  ++     +   D +LLL + +           E+     + 
Sbjct: 87  VLVDTPGIHKPHHLLGERLVQTARGAIGEVDQVLLLVDGSQAAGRGDGFIVELLERIKVP 146

Query: 322 FIFIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
                 KSDL                      H +S+  GEG E L++ + + L      
Sbjct: 147 VQVALNKSDLVDPAQAAELEASYRELVPGWPLHPVSALNGEGTEALVSALAAELPEGPHL 206

Query: 369 LPFSIPSHKRHLYHLSQTVR 388
            P    S +     L++ +R
Sbjct: 207 YPPDAVSDQPEQLLLAELIR 226


>gi|122700787|emb|CAL87982.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S+L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSVL 166


>gi|323485443|ref|ZP_08090791.1| small GTP-binding protein [Clostridium symbiosum WAL-14163]
 gi|323695069|ref|ZP_08109212.1| small GTP-binding protein [Clostridium symbiosum WAL-14673]
 gi|323401306|gb|EGA93656.1| small GTP-binding protein [Clostridium symbiosum WAL-14163]
 gi|323500871|gb|EGB16790.1| small GTP-binding protein [Clostridium symbiosum WAL-14673]
          Length = 398

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 17/168 (10%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +++   GE I  G+     G  NAGKSSL NA+  +++AIV+++ GTT D +   ++L  
Sbjct: 3   LNETPSGERIHIGF----FGRRNAGKSSLVNAVTGQELAIVSEVKGTTTDPVCKSMELLP 58

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFP 317
              V I DT GI +  ++ EK  + ++   +   D+ +L+ + ++ K         I   
Sbjct: 59  LGPVMIIDTPGIDDEGELGEKR-VGKSRQILNKTDIAVLVVDASAGKGEQEDRLIRIFRR 117

Query: 318 KNIDFIFIGTKSDLYSTYTEE---YDHLISSFTGEGLEELINKIKSIL 362
           KNI ++    K+DL      E   ++  +S+ TG  + EL  +I +++
Sbjct: 118 KNIPYLVAYNKTDLNGAEGTEGGRHEIWVSAATGYHIHELKERIAALV 165


>gi|309810373|ref|ZP_07704208.1| ribosome biogenesis GTPase Der [Dermacoccus sp. Ellin185]
 gi|308435686|gb|EFP59483.1| ribosome biogenesis GTPase Der [Dermacoccus sp. Ellin185]
          Length = 506

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 113/299 (37%), Gaps = 35/299 (11%)

Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISS-----ETEMQRRLSMEGMSGELSSLYGQW 161
             +      R  E  ++ +  A+++  ++ +     +T+      +      +  +  + 
Sbjct: 128 EVDASGIHLRVAEQAEVAIELADAVMFVVDATVGATDTDEAVVKLLRRSKKPVVLIANKV 187

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
            D  +   + +   L   E   V +   +   + +  + + +         G   R G +
Sbjct: 188 DDNRSEADAAMLWSLGLGEPYPVSSLHGRGTGDALDAVIDLLPD--KTAVAGAYPRGGPR 245

Query: 222 -IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + +LG  N GKSSL N LA ++  +V ++ GTTRD +   ++L G   +  DTAGIR  
Sbjct: 246 RVALLGRPNVGKSSLLNKLAGEERVVVDNVAGTTRDPVDEYIELGGKTWRFVDTAGIRRR 305

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKS 329
                  +     RT   +E A++ ++L +     +++++   +         +    K 
Sbjct: 306 VHQTRGADFYASLRTQTALEKAEVAVVLIDAEQSIAEQDVRVVQQVIDAGRALVIAYNKW 365

Query: 330 D---------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D         L      E   +        S+ TG   + L+  I+  L +  +++P  
Sbjct: 366 DTLDEERRYYLEKEIERELVQVPWAPRVNLSAKTGRHTDRLVPAIEVALDSWDQRIPTG 424



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 19/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D +  G    + DT G     
Sbjct: 72  VAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVAYDAEWVGRRFTLVDTGGWEVDA 131

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
             +     ++  + +E AD ++ + +          +  ++        + I  K D   
Sbjct: 132 SGIHLRVAEQAEVAIELADAVMFVVDATVGATDTDEAVVKLLRRSKKPVVLIANKVDDNR 191

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                  L+S    E  + +SS  G G  + ++ +  +L +K
Sbjct: 192 SEADAAMLWSLGLGE-PYPVSSLHGRGTGDALDAVIDLLPDK 232


>gi|292806572|gb|ADE42416.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILSAL 166


>gi|122702355|emb|CAL88368.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI ++  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|115605757|gb|ABJ15860.1| YphC [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|317452849|emb|CBL87860.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V+  DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEFLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILSALN 167


>gi|294086068|ref|YP_003552828.1| Small GTP-binding protein domain-containing protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665643|gb|ADE40744.1| Small GTP-binding protein domain protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 478

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 78/217 (35%), Gaps = 23/217 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
               I+G  N GKS+LFN L  +  AIV D PG TRD    D  L G   +I DTAG+ E
Sbjct: 2   VTFAIVGRPNVGKSTLFNRLIGRQHAIVDDQPGVTRDRREGDGRLAGLRFRIIDTAGLEE 61

Query: 280 TDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             D   E     +T L +  AD+ LL+ +                       I +  K +
Sbjct: 62  ASDGSLEDRMRYQTELAIVGADVTLLVVDARVGITPVDKFFAGEIRKSGAHVILVCNKCE 121

Query: 331 -------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                  +  ++T        IS+  GEGL +L + +      +      +         
Sbjct: 122 GKIGASGVAESWTLGLGEPVAISAAHGEGLVDLHDAMLEAADKQGLAGVLTGDDILTTHE 181

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAEN-----LRLAS 413
                      A L+     +D+  +      +R+A 
Sbjct: 182 DDDDLPDNDAEAPLDADGNPVDVWQDEAGKQPMRIAI 218



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 31/204 (15%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E  +   +I I+G  N GKS+L N+L  +D  +V    G TRD + +  + +G   K+
Sbjct: 206 QDEAGKQPMRIAIVGRPNMGKSTLINSLLDEDRLLVGPEAGITRDAIELPFEWQGRPYKL 265

Query: 272 SDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NI 320
            DTAG+R      D VEK  +      ++ A L +LL +      K+++S  +       
Sbjct: 266 VDTAGMRRRARVVDKVEKLMVDDALRAIQYAHLCVLLIDATEELHKQDLSIARLIANEGR 325

Query: 321 DFIFIGTKSDLY------------------STYTEEYDHLISSFTGEGLEELINKIKSIL 362
             +    K D                    S         +S    +GL  L+     + 
Sbjct: 326 AIVIGANKWDAVRNKQESAMQISDRLKTSMSQLKGVPVVQMSGLHKKGLGNLLKAADDMY 385

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQT 386
           +    ++        R L  + + 
Sbjct: 386 AVWNTRVSTG--RLNRWLEIMLEA 407


>gi|122702417|emb|CAL88399.1| GTPase [Helicobacter pylori]
          Length = 168

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 8   IAILGQPNVGKSSLFNCLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
             + KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 67  AFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 126

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 127 EKERTYAFSSFGMPKSFNISVSHNRGISVLIDAILHAL 164


>gi|122702139|emb|CAL88260.1| GTPase [Helicobacter pylori]
 gi|317452841|emb|CBL87856.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|17932845|emb|CAD11319.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 347

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 39/222 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERAYAFSSF-----------------GIPKSFNISVSHNRGISALIDAVLNALNLN 170

Query: 394 SLNEKDCGLDIIAENLRLASVSLGK----------ITGCVDV 425
            + E+D   DI+ E+L   + +L +          I G V+V
Sbjct: 171 QIIEQDLDADIL-ESLETPNNALEETKEEEIIQVGIIGRVNV 211



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 15/179 (8%)

Query: 172 IEADLD-FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           I A +D      ++     +++  DIL      ++ + + K  EII+ G    I+G  N 
Sbjct: 156 ISALIDAVLNALNLNQIIEQDLDADILESLETPNNALEETKEEEIIQVG----IIGRVNV 211

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEG 288
           GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR    I  +EK  
Sbjct: 212 GKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRGKILGIEKYA 271

Query: 289 IKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKSDLYSTYTEEY 339
           ++RT   +E + + LL+ ++++      ++IS   +      I I  K D+     EE 
Sbjct: 272 LERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEI 330


>gi|292806624|gb|ADE42442.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALN 167


>gi|122701527|emb|CAL88153.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLN 167


>gi|292806428|gb|ADE42344.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILNTLN 167


>gi|122700789|emb|CAL87983.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERTYAFSSFGMPKSFNISVSHNRGISALIDAILNTLN 167


>gi|122700833|emb|CAL88005.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|304403961|ref|ZP_07385623.1| GTP-binding protein Era [Paenibacillus curdlanolyticus YK9]
 gi|304346939|gb|EFM12771.1| GTP-binding protein Era [Paenibacillus curdlanolyticus YK9]
          Length = 306

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 89/220 (40%), Gaps = 24/220 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +   +G+ + I+G  N GKS+L N +  + +AI++D P TTR+ +      +   +   D
Sbjct: 10  KKFHSGF-VAIVGRPNVGKSTLMNHIIGQKIAIMSDKPQTTRNKIHGVYTKDDKQIVFLD 68

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIF 324
           T GI +    +    +K     ++  +  L L +++           +++   KN     
Sbjct: 69  TPGIHKPQSKLGNFMVKSAVNALDEVEAALFLIDVSEGIGGGDRFIIEQLKNVKNTPVFL 128

Query: 325 IGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +  K D         + + Y + YD      IS+  G  +E L+ ++   L    +  P 
Sbjct: 129 VMNKIDKVKPEELLKIITQYKDLYDFAEIIPISALQGNNVETLLEQLGRYLPEGPQYYPA 188

Query: 372 SIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLR 410
              +     +  ++ +R  +   +  E    + +  E++R
Sbjct: 189 DQITDHPEQFVCAELIREKILHQTREEIPHSIAVTIEDMR 228


>gi|161349970|ref|YP_045311.2| GTP-binding protein EngA [Acinetobacter sp. ADP1]
          Length = 469

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 112/277 (40%), Gaps = 36/277 (12%)

Query: 119 ENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI- 172
           E  K  + EA+ +  ++ +      ++ Q    +  + G+   L    +D +    + + 
Sbjct: 73  EQSKTAIHEADIIIFVVDARAGLLASDEQIAREIRSL-GKKVYLVANKVDGVHAEAAVVE 131

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
              L F E   V     + V   +  +  D+    +     +    G ++ I+G  N GK
Sbjct: 132 FYKLGFGEPLHVAASHGRGVAQMLEDVLVDVPEDENPEDHDKAT--GLRLAIIGRPNVGK 189

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGI 289
           S+L N L  ++  +  D PGTTRD + I  + +G    + DTAG+R     D+++EK  +
Sbjct: 190 STLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVRRKGKVDEMIEKFSV 249

Query: 290 KRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEEY-- 339
            +T   +++A +++++ +      ++++     +       +    K D  + Y  +   
Sbjct: 250 VKTLQAMKDAHVVVVVVDAREGIVEQDLHLIGYALEAGRAMVIAINKWDNMTEYDRKQCK 309

Query: 340 --------------DHLISSFTGEGLEELINKIKSIL 362
                          HLIS+  G G+ EL   I    
Sbjct: 310 LDVERRFDFIPWAKIHLISALHGTGVGELYPSIHRAY 346



 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN + K   A+V D  G TRD    D   +     + DT GI E +
Sbjct: 5   IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFIVVDTGGIGEGE 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
             ++    +++   +  AD+I+ + +  +    S  +              +  K D
Sbjct: 65  AGIDAYMAEQSKTAIHEADIIIFVVDARAGLLASDEQIAREIRSLGKKVYLVANKVD 121


>gi|122702475|emb|CAL88428.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKEQAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|317452823|emb|CBL87847.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE           +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAARMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERVYAFSSFGIPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|292806474|gb|ADE42367.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERAYAFSSFGIPKSFSISVSHNRGISALIDAILSVL 166


>gi|269795286|ref|YP_003314741.1| hypothetical protein Sked_19830 [Sanguibacter keddieii DSM 10542]
 gi|269097471|gb|ACZ21907.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Sanguibacter keddieii DSM 10542]
          Length = 531

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 19/166 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 99  LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVSYPAEWGGRRFMLVDTGGWEVDV 158

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKN--IDFIFIGTKSD--- 330
             +E    ++  + +  AD ++ + +         ++ +   +      +    K D   
Sbjct: 159 AGIEARVAEQAEVAISLADAVMFVVDATVGPTATDEQVVKLLRKSGKPVVLCANKVDGPR 218

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                  L+S    E  H +S+  G G  +L++     L  K +  
Sbjct: 219 AEADASELWSLGLGE-PHPVSALHGRGTGDLLDAAMRKLPTKTEHG 263



 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 106/291 (36%), Gaps = 38/291 (13%)

Query: 116 RAFENGKIDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           R  E  ++ +  A+++  ++ +      T+ Q    +   SG+   L    +D     R+
Sbjct: 164 RVAEQAEVAISLADAVMFVVDATVGPTATDEQVVKLLRK-SGKPVVLCANKVD---GPRA 219

Query: 171 FIEADLDFSEE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHS 228
             +A   +S    +    S+         L   +    ++ + G  + NG + + ++G  
Sbjct: 220 EADASELWSLGLGEPHPVSALHGRGTGDLLDAAMRKLPTKTEHGVAVPNGPRRVALVGRP 279

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE--- 285
           N GKSSL N +A  +  +V    GTTRD +   + L+G      DTAGIR      +   
Sbjct: 280 NVGKSSLLNKVAGSNRVVVDPTAGTTRDPVDELIQLKGKDWVFVDTAGIRRRVHQTQGAD 339

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTE 337
                RT   +E A++ ++L + + K                   +    K DL      
Sbjct: 340 FYASLRTQAAIEKAEVAVVLLDASEKLTEQDTRVISQVIDSGRSVVIAYNKWDLMDEDRR 399

Query: 338 EY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            +                   IS+ TG   + L+  ++  L +   ++   
Sbjct: 400 PFLEREIEKDLVQVQWAPRVNISAATGWHTDRLVPALERSLESWDTRISTG 450


>gi|222529401|ref|YP_002573283.1| GTP-binding protein Era [Caldicellulosiruptor bescii DSM 6725]
 gi|312622365|ref|YP_004023978.1| GTP-binding protein era [Caldicellulosiruptor kronotskyensis 2002]
 gi|254783286|sp|B9MS56|ERA_ANATD RecName: Full=GTPase Era
 gi|222456248|gb|ACM60510.1| GTP-binding protein Era [Caldicellulosiruptor bescii DSM 6725]
 gi|312202832|gb|ADQ46159.1| GTP-binding protein Era [Caldicellulosiruptor kronotskyensis 2002]
          Length = 300

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 98/235 (41%), Gaps = 40/235 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  K ++I++  P TTR+ +   L LE   +   DT G+    
Sbjct: 8   VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGVHPPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFPKNIDFIFIGTK 328
           + + +  +K +   ++  DLIL + E             I   KE+  PK    I +  K
Sbjct: 68  NKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIERLKEVETPK----ILVLNK 123

Query: 329 SDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           SDL S    E                 I++  G   + L++KIK +L    K     + +
Sbjct: 124 SDLASKENIEILKSIFSTKLNFESIVDIAAINGYNCDLLLDKIKELLPEGPKYYLDDMTT 183

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
             R  + +++ +R   + +L+E+      IA   R A           + + +LD
Sbjct: 184 DVRESFIVAEIIREKILLNLSEEVPHGVGIAIE-RFA---------ERENKDILD 228


>gi|122701373|emb|CAL88076.1| GTPase [Helicobacter pylori]
 gi|122702783|emb|CAL88581.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRAL 166


>gi|18075575|emb|CAD11183.1| GTP-binding protein [Helicobacter pylori]
 gi|122702579|emb|CAL88479.1| GTPase [Helicobacter pylori]
 gi|122702809|emb|CAL88594.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|317452839|emb|CBL87855.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRAL 166


>gi|122702677|emb|CAL88528.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122701703|emb|CAL88241.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|122701337|emb|CAL88058.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|122702737|emb|CAL88558.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVVNKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++    +  IS     G+  LI+ +   L
Sbjct: 129 EKERAYAFSSFGMPKNFNISVSHNRGISALIDAVLRAL 166


>gi|122701393|emb|CAL88086.1| GTPase [Helicobacter pylori]
 gi|122702681|emb|CAL88530.1| GTPase [Helicobacter pylori]
 gi|242255958|gb|ACS88963.1| GTPase [Helicobacter pylori]
 gi|242255960|gb|ACS88964.1| GTPase [Helicobacter pylori]
 gi|292806426|gb|ADE42343.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|122701455|emb|CAL88117.1| GTPase [Helicobacter pylori]
 gi|122702121|emb|CAL88251.1| GTPase [Helicobacter pylori]
 gi|292806598|gb|ADE42429.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700793|emb|CAL87985.1| GTPase [Helicobacter pylori]
 gi|122700897|emb|CAL88037.1| GTPase [Helicobacter pylori]
 gi|122702145|emb|CAL88263.1| GTPase [Helicobacter pylori]
 gi|122702403|emb|CAL88392.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|292806650|gb|ADE42455.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122702521|emb|CAL88450.1| GTPase [Helicobacter pylori]
 gi|122702585|emb|CAL88482.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122702435|emb|CAL88408.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERSYAFSSFGAPKSFNISVSHNRGISALIDAVLSAL 166


>gi|122702523|emb|CAL88451.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122702387|emb|CAL88384.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGVPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122702691|emb|CAL88535.1| GTPase [Helicobacter pylori]
 gi|317453533|emb|CBL87876.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILSALN 167


>gi|122702455|emb|CAL88418.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|317452847|emb|CBL87859.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLN 167


>gi|255544860|ref|XP_002513491.1| GTP-binding protein enga, putative [Ricinus communis]
 gi|223547399|gb|EEF48894.1| GTP-binding protein enga, putative [Ricinus communis]
          Length = 624

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 19/177 (10%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           L      K ++S H+   +   +      I I+G  N GKSS+ NAL  +D  IV+ I G
Sbjct: 327 LVCSQLAKVEVSKHLDNEEQNYV----PAIAIVGRPNVGKSSILNALVGEDRTIVSPISG 382

Query: 253 TTRDVLTIDLD-LEGYLVKISDTAGIRETDDI------VEKEGIKRTFLEVENADLILLL 305
           TTRD +  +    +G   ++ DTAGIR    +       E   + R F  +  +D++ L+
Sbjct: 383 TTRDAIDTEFSGPDGQKFRLIDTAGIRRRAAVASSGSLTEALSVNRAFRAIRRSDVVALV 442

Query: 306 KEINS---KKEISFP-----KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
            E  +   +++         +    + +  K D      ++          E L  L
Sbjct: 443 IEAMACITEQDFRIADRIEKEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRIL 499



 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 68/191 (35%), Gaps = 49/191 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           ++ I+G  N GKS+LFN L   + AIV D PG TRD L        +   + DT G+   
Sbjct: 142 RVAIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRSFWGDFEFMVVDTGGVLTI 201

Query: 278 -RETDDIVEKEGI--------------------------KRTFLEVENADLILLLKEINS 310
            +  D+++E   I                          ++    VE + +I+ L +  +
Sbjct: 202 SQSQDNVMEDLAITTTIGMDGIPLASREAAVARMPSMIERQAAAAVEESSVIIFLVDGQA 261

Query: 311 ---KKEISFPK-------NIDFIFIGTKSDLYSTYTEEYDHLI---------SSFTGEGL 351
                +I           N   I    K +       +              S+ +G G 
Sbjct: 262 GLIAADIEIADWLRKNYSNKFIILAVNKCESPKKGIMQAAEFWSLGLSPIPISALSGTGT 321

Query: 352 EELINKIKSIL 362
            EL++ + S L
Sbjct: 322 GELLDLVCSQL 332


>gi|122702445|emb|CAL88413.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V+I DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEILDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  L++ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALVDAILNALN 167


>gi|122701593|emb|CAL88186.1| GTPase [Helicobacter pylori]
 gi|122702727|emb|CAL88553.1| GTPase [Helicobacter pylori]
 gi|242255950|gb|ACS88959.1| GTPase [Helicobacter pylori]
 gi|292806416|gb|ADE42338.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRALN 167


>gi|292806512|gb|ADE42386.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|242255956|gb|ACS88962.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                  +S++       IS     G+  LI+ + S L+  
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLSALNFN 169


>gi|242255834|gb|ACS88901.1| GTPase [Helicobacter pylori]
 gi|242255836|gb|ACS88902.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI++D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAIISDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122702265|emb|CAL88323.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLDALN 167


>gi|122702323|emb|CAL88352.1| GTPase [Helicobacter pylori]
 gi|122702361|emb|CAL88371.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGVPKSFNISVSHNRGISALIDAVLDALN 167


>gi|317182147|dbj|BAJ59931.1| GTP-binding protein EngA [Helicobacter pylori F57]
          Length = 461

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 25/180 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR  
Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILVGDQKICFVDTAGIRHR 260

Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKSD 330
             I  +EK  ++RT   +E + + LL+ ++++      ++IS   +      I I  K D
Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320

Query: 331 LYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +     EE                    S      ++E+ +KI  +     K++P S+ +
Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKTRHIDEIKHKIIEVYECFSKRIPTSLLN 380



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA+  +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARARIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 129

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS+    G+  LI+ I + L+
Sbjct: 130 EKERAYAFSSFGMPKSFNISASHNRGISALIDAILNALN 168


>gi|122702735|emb|CAL88557.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKEQAYAFSSFGMPKSFNISVSHNRGISALIDAILDTL 166


>gi|122702137|emb|CAL88259.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINHNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILRAL 166


>gi|122700631|emb|CAL87904.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKSLNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|329939204|ref|ZP_08288578.1| GTP-binding protein EngA [Streptomyces griseoaurantiacus M045]
 gi|329302089|gb|EGG45982.1| GTP-binding protein EngA [Streptomyces griseoaurantiacus M045]
          Length = 513

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 81/205 (39%), Gaps = 23/205 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D +  +  E+  +  F   D+   + +   G +      + ++G  N GKS+L N +  +
Sbjct: 41  DAEYAAFMELAAEEGFDVEDVEGALEEAGHGPL----PVLAVVGRPNVGKSTLVNRIIGR 96

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +E AD +
Sbjct: 97  REAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDVLGIDASVAAQAEYAIEAADAV 156

Query: 303 LLLKEI--------NSKKEISFPKNIDFIFIGTKSD----------LYSTYTEEYDHLIS 344
           + + +          +   +        +    K D          L+S    E  H +S
Sbjct: 157 VFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGPSGEADASYLWSLGLGE-PHPVS 215

Query: 345 SFTGEGLEELINKIKSILSNKFKKL 369
           +  G G  ++++K+   L    ++ 
Sbjct: 216 ALHGRGTGDMLDKVLEALPEAPREN 240



 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 105/282 (37%), Gaps = 32/282 (11%)

Query: 123 IDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
             +  A+++  ++ ++        ++  +  +         +K+       +A   +S  
Sbjct: 148 YAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGPSGEADASYLWSLG 207

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY----KIVILGHSNAGKSSLFN 237
               +  S         + + +   + +         G     +I ++G  N GKSSL N
Sbjct: 208 LGEPHPVSALHGRGTGDMLDKVLEALPEAPRENFGGTGLGGPRRIALIGRPNVGKSSLLN 267

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFL 294
            +A ++  +V ++ GTTRD +   ++L G   K  DTAGIR+   + +        RT  
Sbjct: 268 KVAGEERVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRKRVHLQQGADYYASLRTAA 327

Query: 295 EVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSD---------LYSTYTE 337
            VE A++ ++L + +    +        +       +    K D         L      
Sbjct: 328 AVEKAEVAVILLDASENISVQDQRIVTMAVEAGRAVVLAFNKWDTLDEERRYYLEREIET 387

Query: 338 EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           E           +S+ TG  +E+L+  I++ L+    ++P  
Sbjct: 388 ELGQVAWAPRVNVSARTGRHMEKLVPAIETALAGWETRVPTG 429


>gi|242255878|gb|ACS88923.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGINALIDAILSTLN 167


>gi|122701417|emb|CAL88098.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTL 166


>gi|122700797|emb|CAL87987.1| GTPase [Helicobacter pylori]
 gi|122700865|emb|CAL88021.1| GTPase [Helicobacter pylori]
 gi|122701331|emb|CAL88055.1| GTPase [Helicobacter pylori]
 gi|122702441|emb|CAL88411.1| GTPase [Helicobacter pylori]
 gi|122702529|emb|CAL88454.1| GTPase [Helicobacter pylori]
 gi|292806614|gb|ADE42437.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|93004278|gb|ABE97059.1| YphC [Helicobacter pylori]
 gi|99905861|gb|ABF68625.1| YphC [Helicobacter pylori]
 gi|122702715|emb|CAL88547.1| GTPase [Helicobacter pylori]
 gi|242255892|gb|ACS88930.1| GTPase [Helicobacter pylori]
 gi|242255896|gb|ACS88932.1| GTPase [Helicobacter pylori]
 gi|242255934|gb|ACS88951.1| GTPase [Helicobacter pylori]
 gi|317453531|emb|CBL87875.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSAL 166


>gi|18075565|emb|CAD11178.1| GTP-binding protein [Helicobacter pylori]
 gi|122702807|emb|CAL88593.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAILRALN 167


>gi|326389849|ref|ZP_08211413.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus JW 200]
 gi|325994117|gb|EGD52545.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus JW 200]
          Length = 302

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKS+L NA+ ++ +AI +  P TTR+ +   L  + Y V   DT GI +  
Sbjct: 8   VALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIHGILTTDEYQVIFVDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDLYS 333
             + +  I+     ++  DLIL + E +++        I   K  +   I +  K DL  
Sbjct: 68  SKLSEFMIEVAKRTLKEVDLILYMIEPDTEVGPGDRYIIEHLKEVDTPVILVVNKIDLVP 127

Query: 334 T---------YTEEYDHLI----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     + E+Y+       S+   + ++ L  KI S+L    K       + +   
Sbjct: 128 EERVEETIKIFKEQYEFKDVVAISAIENKNIDLLKEKIVSLLPEGPKYYLDDYITDQPEK 187

Query: 381 YHLSQTVR 388
             +++ +R
Sbjct: 188 LIVAEIIR 195


>gi|281411523|ref|YP_003345602.1| GTP-binding protein Era [Thermotoga naphthophila RKU-10]
 gi|281372626|gb|ADA66188.1| GTP-binding protein Era [Thermotoga naphthophila RKU-10]
          Length = 300

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I++G+ + + G  N GKS+  NA+  + V IV+D P TTR+ +      +   +   DT 
Sbjct: 3   IKSGF-VALAGKPNVGKSTFINAVMGRKVVIVSDKPQTTRNRINCIYTDKDSQIIFVDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           GI +    + +  +K     ++  DL+L + +             EI        I    
Sbjct: 62  GIHKPLHRLGEYMVKAAVQALKGVDLVLFMLDAADGFTKTDEHVAEIVNDSGTKTIIAVN 121

Query: 328 KSDLYSTYTEEY--------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D+      +                H IS+  GEG+ E++ KIK  L    +  P  +
Sbjct: 122 KIDVAGEEKAKAVGELAKSMVENVVSVHYISALKGEGVFEVLEKIKEELPEGPQYYPEDM 181

Query: 374 PSHKRHLYHLSQTVR 388
            + +   +  ++ +R
Sbjct: 182 VTDRPLSFIAAEIIR 196


>gi|255690242|ref|ZP_05413917.1| GTP-binding protein [Bacteroides finegoldii DSM 17565]
 gi|260624262|gb|EEX47133.1| GTP-binding protein [Bacteroides finegoldii DSM 17565]
          Length = 396

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V+D PGTT D+++  ++++G       DT G
Sbjct: 10  NRLHIALFGRRNSGKSSLVNALTGQDTALVSDTPGTTTDLVSKAMEMQGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKE---ISFPKNIDFIFIGTKSD 330
             +  ++ E   + RT   +E  D+ LLL      + +KE   +   KNI  I +  K D
Sbjct: 70  FDDEGELGELR-VSRTLKAIEKTDIALLLCGDTTFSHEKEMLALLKEKNIPVIPVLNKID 128

Query: 331 L----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +               +    L+S+    G+E++   I   L + F +   +
Sbjct: 129 IRENSDSLATYIEKECKIRPLLVSAKEEIGIEQIRQAILEKLPSDFGQQSIT 180


>gi|122702577|emb|CAL88478.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI ++  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|122702787|emb|CAL88583.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|122702251|emb|CAL88316.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGVPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|330443932|ref|YP_004376918.1| GTP-binding protein engA [Chlamydophila pecorum E58]
 gi|328807042|gb|AEB41215.1| GTP-binding protein engA [Chlamydophila pecorum E58]
          Length = 483

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 20/171 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-R 278
            +I ILG  N GKSSLFN L K+ +AIV    GTTRD L     +    +++ DT G+ +
Sbjct: 2   LRIAILGRPNVGKSSLFNRLCKRSLAIVNAEEGTTRDRLYGSAQICDSTIQVIDTGGVNK 61

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD 330
           ++ D  +K   K+  +  + ADL+LL+ +I    +++++   K     N   I +  K+D
Sbjct: 62  DSQDHFQKHIFKQALVGAKEADLLLLVVDIRCGITEQDMQLAKLLRPLNKPIILVANKAD 121

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                     LYS    E   + S+  G+ ++ L++KI+ +      +   
Sbjct: 122 SRKDEFGIHELYSLGIPEI-VVTSAAHGKHIDTLVHKIQRLAKIPEIQPES 171



 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 92/255 (36%), Gaps = 35/255 (13%)

Query: 156 SLYGQWIDKLTHIRSFIEADLDFS-EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
                 + K+  +    E   +   ++ED+          +   +  ++     +    E
Sbjct: 149 KHIDTLVHKIQRLAKIPEIQPESPQDDEDLHEEKELLCDKESEAIFEEVFDENHESFFVE 208

Query: 215 IIR-------NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
             +          KI ++G  N GKSS+ N L  ++  I  +IPGTTRD + I    E  
Sbjct: 209 DPQLPPLETNQPLKIALIGRPNVGKSSIINGLLNEERCITDNIPGTTRDNVDILYTKEDR 268

Query: 268 LVKISDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFP- 317
                DTAG+R+     + VE     RT   +  AD+ LL+ +         K+ +S   
Sbjct: 269 SYLFIDTAGLRKMKSVKNSVEWISTSRTEKAISRADICLLVVDATQGLSSYDKRILSLIS 328

Query: 318 -KNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKS 360
            +    I +  K DL  +   E+                   IS+     L ++   I  
Sbjct: 329 KEKKPHILLVNKWDLMHSIRMEHYCRDVLATDPYLGQARILCISALKKRNLSQIFRAIDE 388

Query: 361 ILSNKFKKLPFSIPS 375
           +     +K+P  + +
Sbjct: 389 LHEVISRKVPTPMVN 403


>gi|145579207|pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
           From Thermus Thermophilus Hb8
 gi|145579208|pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
           From Thermus Thermophilus Hb8
          Length = 161

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 18/160 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+VI+G  N GKSSLFN L KK  A+V D+PG TRD+    ++ +     + DT G+  +
Sbjct: 3   KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGL-WS 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D  EK+  ++    +E+A+++L   +  ++         E    K    I + TK D  
Sbjct: 62  GDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILS 363
                L   Y   +      SS    GLEEL+  I   L 
Sbjct: 122 KHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERLP 161


>gi|122702605|emb|CAL88492.1| GTPase [Helicobacter pylori]
 gi|242255882|gb|ACS88925.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLN 167


>gi|88607492|ref|YP_504995.1| GTP-binding protein EngA [Anaplasma phagocytophilum HZ]
 gi|88598555|gb|ABD44025.1| putative GTP-binding protein EngA [Anaplasma phagocytophilum HZ]
          Length = 440

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 12/166 (7%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKD 243
             + S E    +  L   I+  I Q +  +  ++    I I+G  N GKS+  N++  ++
Sbjct: 139 PVYISAEHNLGMADLYEAIAPLIEQSERPKKDQDRPIAISIIGQPNVGKSTFVNSILGEE 198

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENAD 300
             I + I GTTRD ++ +   +G  + ++DTAGIR+   +   +EK  ++     +  + 
Sbjct: 199 RVITSGIAGTTRDSISAEYSYKGITLLLTDTAGIRKRTKVTENMEKLSVQSAIHALSKSH 258

Query: 301 LILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEE 338
           +++L+ +     S++++S            +    K+DL +    E
Sbjct: 259 VVILIVDFTQGISQQDLSIASTAIKDGKGIVLALNKADLVNDKAAE 304



 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 23/164 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+LFN L ++  AIV+DI   TRD     +D  G      DT G+   
Sbjct: 3   KVAIVGLPNVGKSTLFNRLTRRKSAIVSDIAHVTRDRKEALVDFCGLRFIAIDTGGV--- 59

Query: 281 DDIVEKEGIKRT--FLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKS 329
            D  E + + +T   L +ENAD++L + +     +         +S   N   I +  K 
Sbjct: 60  ADGGEIQSLVKTQVQLALENADVVLFVIDAQRATDSHSTSLGKWLSKITNKPIILVANKC 119

Query: 330 ---------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                    D            IS+    G+ +L   I  ++  
Sbjct: 120 ESNKNNVHVDTMEYLGFLGPVYISAEHNLGMADLYEAIAPLIEQ 163


>gi|239932165|ref|ZP_04689118.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672]
 gi|291440533|ref|ZP_06579923.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672]
 gi|291343428|gb|EFE70384.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672]
          Length = 496

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 84/226 (37%), Gaps = 21/226 (9%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D     D +     E+  +  F   D+   I     G +      + ++G  N GKS+L 
Sbjct: 20  DHGALGDAEYAEFMELAAEEGFDLEDVEGAIEAAGHGPL----PVLAVVGRPNVGKSTLV 75

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N +  +  A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +
Sbjct: 76  NRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDVLGIDASVAAQAEYAI 135

Query: 297 ENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------- 339
           E AD ++ + +          +   +        +    K D  S   +           
Sbjct: 136 EAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGPSGEADAAYLWSLGLGE 195

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
            + +S+  G G  ++++++  +L +   +   +     R +  + +
Sbjct: 196 PYPVSALHGRGTGDMLDQVLEVLPDAPAQTFGTAVGGPRRVALIGR 241



 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 198 FLKNDISSHISQGKL---GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            + + +   +        G  +    ++ ++G  N GKSSL N +A ++  +V ++ GTT
Sbjct: 209 DMLDQVLEVLPDAPAQTFGTAVGGPRRVALIGRPNVGKSSLLNKVAGEERVVVNELAGTT 268

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRE 279
           RD +   ++L G   K  DTAGIR+
Sbjct: 269 RDPVDEMIELGGKTWKFVDTAGIRK 293


>gi|292806636|gb|ADE42448.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGINALIDAILNALN 167


>gi|122701479|emb|CAL88129.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRAL 166


>gi|122702223|emb|CAL88302.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +     I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVNGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALN 167


>gi|122700879|emb|CAL88028.1| GTPase [Helicobacter pylori]
 gi|122701623|emb|CAL88201.1| GTPase [Helicobacter pylori]
 gi|122701677|emb|CAL88228.1| GTPase [Helicobacter pylori]
 gi|122702155|emb|CAL88268.1| GTPase [Helicobacter pylori]
 gi|122702241|emb|CAL88311.1| GTPase [Helicobacter pylori]
 gi|122702369|emb|CAL88375.1| GTPase [Helicobacter pylori]
 gi|122702397|emb|CAL88389.1| GTPase [Helicobacter pylori]
 gi|122702511|emb|CAL88446.1| GTPase [Helicobacter pylori]
 gi|317453543|emb|CBL87881.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|50313209|gb|AAT74552.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 333

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 39/222 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I + ++I   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDIKLFREVFKINPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERAYAFSSF-----------------GMPKSFNISVSHNRGISALIDAVLNALNLN 170

Query: 394 SLNEKDCGLDIIAENLRLASVSLGK----------ITGCVDV 425
            + E+D   DI+ E+L   + +L +          I G V+V
Sbjct: 171 QIIEQDLDADIL-ESLETPNNALEENKEEEIIQVGIIGRVNV 211



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 15/179 (8%)

Query: 172 IEADLD-FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           I A +D      ++     +++  DIL      ++ + + K  EII+ G    I+G  N 
Sbjct: 156 ISALIDAVLNALNLNQIIEQDLDADILESLETPNNALEENKEEEIIQVG----IIGRVNV 211

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEG 288
           GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR    I  +EK  
Sbjct: 212 GKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRGKILGIEKYA 271

Query: 289 IKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKSDLYSTYTEEY 339
           ++RT   +E + + LL+ ++++      ++IS   +      I I  K D+     EE 
Sbjct: 272 LERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEI 330


>gi|122701647|emb|CAL88213.1| GTPase [Helicobacter pylori]
 gi|122701655|emb|CAL88217.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGVPKSFNISVSHNRGISALIDAVLNALN 167


>gi|99905849|gb|ABF68619.1| YphC [Helicobacter pylori]
 gi|115605761|gb|ABJ15862.1| YphC [Helicobacter pylori]
 gi|122700601|emb|CAL87889.1| GTPase [Helicobacter pylori]
 gi|122700603|emb|CAL87890.1| GTPase [Helicobacter pylori]
 gi|122700611|emb|CAL87894.1| GTPase [Helicobacter pylori]
 gi|122700613|emb|CAL87895.1| GTPase [Helicobacter pylori]
 gi|122700617|emb|CAL87897.1| GTPase [Helicobacter pylori]
 gi|122702639|emb|CAL88509.1| GTPase [Helicobacter pylori]
 gi|122702857|emb|CAL88618.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|94495668|ref|ZP_01302248.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58]
 gi|94425056|gb|EAT10077.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58]
          Length = 456

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  K +A+V D PG TRD    +  L G    I DTAG  + D
Sbjct: 5   VAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRREGEAHLLGLDFTIIDTAGYEDED 64

Query: 282 DIVE-KEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLY 332
                     +T   V+N D+ L L +  +      +EI+      +   + +  K++  
Sbjct: 65  PQSLPGRMRIQTEAAVDNCDVALFLVDARAGITPLDEEIARWLREGDAPVVLVANKAEGR 124

Query: 333 ST---------YTEEYDHLISSFTGEGLEELINKI 358
           ++                  S+  G+G+ +L   +
Sbjct: 125 ASEGGVMEAFGLGLGEPIPFSAEHGQGMADLFQAL 159



 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 36/199 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL---EG--YLVKISDT 274
            K+ I+G  NAGKS+L N L  ++  +     G TRD + +D      EG    V++ DT
Sbjct: 186 LKLAIVGRPNAGKSTLINRLLGENRLLTGPEAGITRDSIAVDWSWTSREGLERPVRLIDT 245

Query: 275 AGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFI 323
           AG+R+     D +EK  +      V  A++++LL +     E            +    +
Sbjct: 246 AGMRKRAKVQDKLEKLAVSDGLNAVNFAEVVVLLLDSTRGLEAQDLRIADKVLEEGRALV 305

Query: 324 FIGTKSDLYSTYTEEY------------------DHLISSFTGEGLEELINKIKSILSNK 365
               K D     +  Y                     +S+ TG+GL++LI+      +  
Sbjct: 306 IALNKWDTVDNGSALYQGIKQALSDGLAQVRGVPIMTVSAATGKGLDDLIHVAFETRTAW 365

Query: 366 FKKLPFSIPSH--KRHLYH 382
            +++   I +   +R L  
Sbjct: 366 SQRISTGILNRWFERALEA 384


>gi|195954215|gb|ACG58813.1| YphC [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|99905865|gb|ABF68627.1| YphC [Helicobacter pylori]
 gi|122702641|emb|CAL88510.1| GTPase [Helicobacter pylori]
 gi|242255928|gb|ACS88948.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I + L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNAL 166


>gi|189218193|ref|YP_001938835.1| GTP-binding protein EngA [Methylacidiphilum infernorum V4]
 gi|189185051|gb|ACD82236.1| GTP-binding protein EngA [Methylacidiphilum infernorum V4]
          Length = 433

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 20/232 (8%)

Query: 118 FENGKIDLLEAESLADLISSET-----EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+   + + EA  +  ++   T     + Q    +      ++ +  +            
Sbjct: 45  FDQISMAVEEAHHILFVVDGRTGLLPLDKQIAKFLREKHKAVTVVVNKLDHPGMEHFCAE 104

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
            A+L F E        S      I  L   I S  ++ +   I     +I ++G  NAGK
Sbjct: 105 FANLGFEEI----FAVSAAHNLGINQLLEKIFSLGAEERENPIFAPSTRIAVIGQPNAGK 160

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK-- 290
           SSL N+L  +   +V + PGTT D + + +++ G      DTAG+++ + + E   IK  
Sbjct: 161 SSLINSLIGESRLVVHEEPGTTHDAVEVGIEVCGVPFTFIDTAGLKKKNKLQEGLEIKVS 220

Query: 291 -RTFLEVENADLILLLKEINSKKEISFPKN--------IDFIFIGTKSDLYS 333
            RT   +  + L+  + +      +   K            + I  K DL  
Sbjct: 221 GRTVHSINRSHLVWFIIDGQKGITLQDKKIGGLIQKAFKPCMVILNKIDLLE 272



 Score = 56.0 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 18/133 (13%)

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG-IKRTFLEVENADLILLL 305
           V D PG TRD +   +  EG  + + DT G+         +    +  + VE A  IL +
Sbjct: 2   VYDQPGVTRDRIVCCIKKEGKEIVLVDTGGLVFDCQTDLAKSLFDQISMAVEEAHHILFV 61

Query: 306 KEINS-----KKEIS---FPKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTG 348
            +  +      K+I+     K+     +  K D          ++    E    +S+   
Sbjct: 62  VDGRTGLLPLDKQIAKFLREKHKAVTVVVNKLDHPGMEHFCAEFANLGFEEIFAVSAAHN 121

Query: 349 EGLEELINKIKSI 361
            G+ +L+ KI S+
Sbjct: 122 LGINQLLEKIFSL 134


>gi|122702545|emb|CAL88462.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|18075587|emb|CAD11189.1| GTP-binding protein [Helicobacter pylori]
 gi|18075589|emb|CAD11190.1| GTP-binding protein [Helicobacter pylori]
 gi|18075591|emb|CAD11191.1| GTP-binding protein [Helicobacter pylori]
 gi|122700753|emb|CAL87965.1| GTPase [Helicobacter pylori]
 gi|122700759|emb|CAL87968.1| GTPase [Helicobacter pylori]
 gi|122700763|emb|CAL87970.1| GTPase [Helicobacter pylori]
 gi|122700835|emb|CAL88006.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNTLN 167


>gi|122701611|emb|CAL88195.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERTYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|152976731|ref|YP_001376248.1| GTP-binding protein Era [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025483|gb|ABS23253.1| GTP-binding protein Era [Bacillus cytotoxicus NVH 391-98]
          Length = 301

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   DT 
Sbjct: 6   YKSGF-VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKVQGVYTENDAQVIFIDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPK----NIDFIFIGT 327
           GI +    +    +K     ++  D++L +          +E    K          +  
Sbjct: 65  GIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAAEGFGRGEEYIIEKLKETRQPVFLVIN 124

Query: 328 KSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D         L   Y   Y+      IS+  G  +E LI  IK  L    +  P +  
Sbjct: 125 KIDQVHPEKLLELIDQYRNLYEFAEIVPISALEGNNVEALIGAIKKYLPEGPQYYPENQV 184

Query: 375 SHKRHLYHLSQTVR 388
           +     + +++ +R
Sbjct: 185 TDHPERFIIAELIR 198


>gi|206901698|ref|YP_002251036.1| GTP-binding protein Era [Dictyoglomus thermophilum H-6-12]
 gi|206740801|gb|ACI19859.1| GTP-binding protein Era [Dictyoglomus thermophilum H-6-12]
          Length = 297

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKS+L N L  + V+IV D P TTR  +   L LE       DT G     
Sbjct: 9   IGIVGKPNAGKSTLINLLVGEKVSIVADKPQTTRQRILGVLTLEDAQFIFLDTPGWFPPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNI--DFIFIGTKSDLYS 333
            ++ +   K     +E++D++L + +       +++  + F K+    ++ +  K D+ S
Sbjct: 69  HLLGEYMQKTIKKTIEDSDIVLYVIDSSVELDEDNRTLLKFVKDQGKPYLVLLNKIDMVS 128

Query: 334 T--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                            EE    IS+  G   E LI K+K I        P  + + +  
Sbjct: 129 PKVLEERKKEVISLGVEEERIMEISALYGTNKELLIEKLKEIAPEGDFLYPPDMLTDQTD 188

Query: 380 LYHLSQTVR 388
            + +S+ +R
Sbjct: 189 KFFISEIIR 197


>gi|122702393|emb|CAL88387.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISSLIDAVLRALN 167


>gi|122701639|emb|CAL88209.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNHLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFSISVSHNRGISALIDAILSALN 167


>gi|50313211|gb|AAT74553.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 332

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 39/222 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I + ++I   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDIKLFREVFKINPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERAYAFSSF-----------------GMPKSFNISVSHNRGISALIDAVLNALNLN 170

Query: 394 SLNEKDCGLDIIAENLRLASVSLGK----------ITGCVDV 425
            + E+D   DI+ E+L   + +L +          I G V+V
Sbjct: 171 QIIEQDLDADIL-ESLETPNNALEENKEEEIIQVGIIGRVNV 211



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 15/179 (8%)

Query: 172 IEADLD-FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           I A +D      ++     +++  DIL      ++ + + K  EII+ G    I+G  N 
Sbjct: 156 ISALIDAVLNALNLNQIIEQDLDADILESLETPNNALEENKEEEIIQVG----IIGRVNV 211

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEG 288
           GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR    I  +EK  
Sbjct: 212 GKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRGKILGIEKYA 271

Query: 289 IKRTFLEVENADLILLLKEINSK-----KEISFPKNID---FIFIGTKSDLYSTYTEEY 339
           ++RT   +E + + LL+ ++++      ++IS   +      I I  K D+     EE 
Sbjct: 272 LERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEI 330


>gi|242255814|gb|ACS88891.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILRAL 166


>gi|122702849|emb|CAL88614.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  TLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSAL 166


>gi|292806436|gb|ADE42348.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERVYAFSSFGIPKSFNISVSHNRGISALIDAILRALN 167


>gi|292806602|gb|ADE42431.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
              + Y            IS     G+  LI+ I S L
Sbjct: 129 EKEQAYAFFSFGMPKSFNISVSHNRGISALIDAILSAL 166


>gi|122700885|emb|CAL88031.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|166032680|ref|ZP_02235509.1| hypothetical protein DORFOR_02395 [Dorea formicigenerans ATCC
           27755]
 gi|166027037|gb|EDR45794.1| hypothetical protein DORFOR_02395 [Dorea formicigenerans ATCC
           27755]
          Length = 298

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 85/209 (40%), Gaps = 23/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI ++ P TTR+ +   L  +   +   DT GI +  
Sbjct: 10  VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTDEGQIVFVDTPGIHKAK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---------KKEISFPKNIDFIFIGTKSD-- 330
           + + +  +      +   D++L L E  +          K++   K    I +  K D  
Sbjct: 70  NKLGEYMVNVAEKTLNEVDVVLWLVEPTTFIGAGEQHIAKQLQRVK-TPVILVINKVDSV 128

Query: 331 -------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                    + Y + YD      +S+ +G+  +EL+  I   L    +       + +  
Sbjct: 129 KREEILPAIAAYKDIYDFADIVPVSARSGDNTDELLRVIMKYLPYGPQFYDEDTVTDQPE 188

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
              +++ +R   + SL ++      +A +
Sbjct: 189 RQIVAELIREKALHSLQDEIPHGIAVAID 217


>gi|122701491|emb|CAL88135.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDTILNALN 167


>gi|18075561|emb|CAD11176.1| GTP-binding protein [Helicobacter pylori]
 gi|122702801|emb|CAL88590.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNCLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGAPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|331269998|ref|YP_004396490.1| GTP-binding protein Era [Clostridium botulinum BKT015925]
 gi|329126548|gb|AEB76493.1| GTP-binding protein Era [Clostridium botulinum BKT015925]
          Length = 294

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 24/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +  + ++IV+  P TTR+ +   L  E Y +   DT GI +  
Sbjct: 7   ISIIGRPNVGKSTLINEILGEKLSIVSCRPQTTRNNIRAILTKEDYQLVFLDTPGIHKPR 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLK----EINSKKEISFPK----NIDFIFIGTKSD--- 330
             + +  +K      +  DLI+ +     EI    E+        N     I  K D   
Sbjct: 67  HKLGEYMVKAAESSKDEVDLIVFITTPQSEIGKGDELILENIKNSNKPVFLIVNKIDENP 126

Query: 331 --LYSTYTEEYDHLI--------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
             L +   ++Y   +        S+   + ++ L++ +   +    K  P  + +  +  
Sbjct: 127 PELVAETLKKYSEYMEFKEIIPISAQKNKNVDTLLDLMIKYMPEGPKYYPDDMITDVQER 186

Query: 381 YHLSQTVRYLEMASLNE---KDCGLDIIA 406
           + +S+ +R   +  L+E       ++II+
Sbjct: 187 FVVSEIIREKALKLLSEEVPHGIAVEIIS 215


>gi|312135210|ref|YP_004002548.1| gtp-binding protein era [Caldicellulosiruptor owensensis OL]
 gi|311775261|gb|ADQ04748.1| GTP-binding protein Era [Caldicellulosiruptor owensensis OL]
          Length = 300

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 40/235 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  K ++I++  P TTR+ +   L LE   +   DT G+    
Sbjct: 8   VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGVHPPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFPKNIDFIFIGTK 328
           + + +  +K +   ++  DLIL + E             +   KE+  PK    I +  K
Sbjct: 68  NKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIVEKLKEVETPK----ILVLNK 123

Query: 329 SDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           SDL S    E                 I++  G   + L+N+IK +L    K     + +
Sbjct: 124 SDLASKENIEVLKSIFSAKLNFESIIDIAAINGYNCDLLLNEIKELLPEGPKYYLDDMTT 183

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
             R  + +++ +R   + +L+E+      IA   R A           + + +LD
Sbjct: 184 DVRESFIVAEIIREKILLNLSEEVPHGVGIAIE-RFA---------ERENKDILD 228


>gi|122702731|emb|CAL88555.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  TLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I  +L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVL 166


>gi|18075555|emb|CAD11173.1| GTP-binding protein [Helicobacter pylori]
 gi|122702821|emb|CAL88600.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKTLNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLDALN 167


>gi|122702653|emb|CAL88516.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIILNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|122700599|emb|CAL87888.1| GTPase [Helicobacter pylori]
 gi|122700735|emb|CAL87956.1| GTPase [Helicobacter pylori]
 gi|122700809|emb|CAL87993.1| GTPase [Helicobacter pylori]
 gi|122700813|emb|CAL87995.1| GTPase [Helicobacter pylori]
 gi|122700819|emb|CAL87998.1| GTPase [Helicobacter pylori]
 gi|122701463|emb|CAL88121.1| GTPase [Helicobacter pylori]
 gi|122701483|emb|CAL88131.1| GTPase [Helicobacter pylori]
 gi|122701707|emb|CAL88243.1| GTPase [Helicobacter pylori]
 gi|122702183|emb|CAL88282.1| GTPase [Helicobacter pylori]
 gi|122702481|emb|CAL88431.1| GTPase [Helicobacter pylori]
 gi|122702509|emb|CAL88445.1| GTPase [Helicobacter pylori]
 gi|122702827|emb|CAL88603.1| GTPase [Helicobacter pylori]
 gi|195954209|gb|ACG58810.1| YphC [Helicobacter pylori]
 gi|195954211|gb|ACG58811.1| YphC [Helicobacter pylori]
 gi|292806464|gb|ADE42362.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806558|gb|ADE42409.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806568|gb|ADE42414.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806666|gb|ADE42463.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806686|gb|ADE42473.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|259046831|ref|ZP_05737232.1| GTP-binding protein Era [Granulicatella adiacens ATCC 49175]
 gi|259036454|gb|EEW37709.1| GTP-binding protein Era [Granulicatella adiacens ATCC 49175]
          Length = 302

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 81/206 (39%), Gaps = 22/206 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ + I+G  N GKS+  N +  + +AI++D   TTR+ +      +   +   D
Sbjct: 3   KSFKSGF-VAIVGRPNVGKSTFMNYVLGQKIAIMSDKAQTTRNKIQGVYTKDNAQIVFLD 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFI 325
           T GI +    + +  +K  +  ++  D +L +  ++ K+       I   K        +
Sbjct: 62  TPGIHKPKHELGEFMVKSAYSALKEVDAVLFMVNVSEKRGPGDDFIIEKLKGIKTPIFLV 121

Query: 326 GTKSDL---------YSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL           +Y +  D      IS   G  + EL+  +   L    +  P  
Sbjct: 122 LNKIDLVTPEVLLERVESYKDALDFAGVFPISVLQGNNVNELMEALIEALPEGPQYYPAD 181

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEK 398
             +     + +S+ +R   +    E+
Sbjct: 182 QITDHPEYFVVSELIREKILQLTQEE 207


>gi|37522779|ref|NP_926156.1| GTP-binding protein EngA [Gloeobacter violaceus PCC 7421]
 gi|41017005|sp|Q7NGF9|DER_GLOVI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|35213781|dbj|BAC91151.1| gll3210 [Gloeobacter violaceus PCC 7421]
          Length = 455

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 118/331 (35%), Gaps = 51/331 (15%)

Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS---------MEGMSGELSSL 157
            A    +     + G +   ++E    LI  + E+    +          +G++G    +
Sbjct: 45  PAEWCGYRFEVVDTGGLVFEDSEVFLPLIREQVEIALAEAAAVLFVVDGQQGITGGDREV 104

Query: 158 YGQWIDKLTHIR-----------SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
                 +   +            +   A   ++         S    +    L + + + 
Sbjct: 105 ADWLRGRKPPVLIVANKLEEPSTALSLAAEFYALGLGEPYAVSAIHGSGTGDLLDALVAV 164

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD--VAIVTDIPGTTRDVLTIDLDL 264
           + + +  E      ++ I+G  N GKSSL NAL   +   ++V+++ GTTRD +   ++ 
Sbjct: 165 LPKDQPEEQELPELRVSIVGRPNVGKSSLLNALVGGEHPRSMVSEVAGTTRDAIDTLVEH 224

Query: 265 EGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK 318
                ++ DTAGIR     D   E  G+ R    +  AD+++L+ +       +E +   
Sbjct: 225 GERRYRLIDTAGIRRKSRVDYGPEAFGVTRAIRAIRRADVVVLVVDATEGIHDQERNLAA 284

Query: 319 N-----IDFIFIGTKSDLYSTYTEEYDHLI------------------SSFTGEGLEELI 355
                    + +  K D     T   +H                    S+ TG+ +E++ 
Sbjct: 285 KIASAGRACVLVVNKWDAIEKDTYTMNHYRDEMRRELDFVEWAPVVFTSALTGQRVEKIF 344

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           + I +      +++  S+ +       L ++
Sbjct: 345 DAIDAAAGQHQRRVSTSVLNEALQDALLWRS 375



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 19/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+L N LA    AIV D PG TRD L +  +  GY  ++ DT G+  E 
Sbjct: 6   VAIIGRPNVGKSTLLNRLAGGSEAIVYDQPGVTRDRLYLPAEWCGYRFEVVDTGGLVFED 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            ++      ++  + +  A  +L + +             +    +    + +  K +  
Sbjct: 66  SEVFLPLIREQVEIALAEAAAVLFVVDGQQGITGGDREVADWLRGRKPPVLIVANKLEEP 125

Query: 333 ST---YTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           ST      E+        + +S+  G G  +L++ + ++L     + 
Sbjct: 126 STALSLAAEFYALGLGEPYAVSAIHGSGTGDLLDALVAVLPKDQPEE 172


>gi|295839702|ref|ZP_06826635.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB74]
 gi|295827618|gb|EFG65509.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB74]
          Length = 488

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 78/204 (38%), Gaps = 21/204 (10%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D +     E+  +  F   D+   I +   G + R    + ++G  N GKS+L N +  +
Sbjct: 17  DAEYERFMELAAEEGFDVEDVEDAIGEAGHGPLPR----LAVVGRPNVGKSTLVNRIIGR 72

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +E +D +
Sbjct: 73  REAVVEDRPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDVLGIDASVAAQAEYAIEASDAV 132

Query: 303 LLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY---------DHLISS 345
           + + +          +   +        +    K D  S   +            H +S+
Sbjct: 133 VFVVDATVGATDTDEAVVRLLRKAGKPVVLCANKVDGPSGEADAAMLWSLGLGEPHPVSA 192

Query: 346 FTGEGLEELINKIKSILSNKFKKL 369
             G G  ++++ +   L    K+ 
Sbjct: 193 LHGRGTGDMLDAVLEALPEAPKET 216



 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 86/237 (36%), Gaps = 35/237 (14%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
              + +   L   E   V     +   + +  +   +     +   G       ++ ++G
Sbjct: 173 EADAAMLWSLGLGEPHPVSALHGRGTGDMLDAVLEALPEAPKETFGGTGTGGPRRVALIG 232

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N GKSSL N LA +D  +V +  GTTRD +   ++L G   K  DTAGIR+   + + 
Sbjct: 233 RPNVGKSSLLNKLAGEDRVVVNEQAGTTRDPVDELIELGGVTWKFVDTAGIRKRVHLQQG 292

Query: 287 EGIKRTFLE-------------VENADLILLLKEINSKKEISFPKNIDFIFIG--TKSD- 330
                +                ++ AD I     +  ++ ++   +     +    K D 
Sbjct: 293 ADYYASLRTAAAVEKAEVAVVLIDGADSI----SVQDQRILTMAVDAGRALVLAYNKWDT 348

Query: 331 --------LYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   L      E           IS+ TG  +E+L+  +++ L+    ++P  
Sbjct: 349 LDEERRYYLEREIERELGQVAWAPRVNISARTGRHMEKLVPALETALAGWEARVPTG 405


>gi|262202714|ref|YP_003273922.1| ribosome-associated GTPase EngA [Gordonia bronchialis DSM 43247]
 gi|262086061|gb|ACY22029.1| ribosome-associated GTPase EngA [Gordonia bronchialis DSM 43247]
          Length = 478

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 27/202 (13%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           +       + G  +    ++ ++G  N GKSSL N LA  + ++V ++ GTT D +   +
Sbjct: 198 LEKLPETPREGPALGGPRRVALVGKPNVGKSSLLNKLAGAERSVVDNVAGTTVDPVDELI 257

Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK-------- 311
           +L+G   +  DTAG+R         E     RT   ++ A++ +LL + +          
Sbjct: 258 ELDGKTWQFVDTAGLRRKVRTASGHEYYASLRTRAALDAAEVAILLIDASEPITEQDLRV 317

Query: 312 KEISFPKNIDFIFIGTKSDLYST-----YTEEYD-----------HLISSFTGEGLEELI 355
             +        I    K DL          +E D             IS+ TG  + +L+
Sbjct: 318 LSLIIDSGRALIIAFNKWDLVDEDRRYQLDKEIDRELARVPWASRVNISASTGRAVHKLV 377

Query: 356 NKIKSILSNKFKKLPFSIPSHK 377
             ++S L +  K++     ++ 
Sbjct: 378 PALESALDSWDKRISTGPLNNW 399



 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V DIPG TRD ++      G    + DT G     
Sbjct: 44  LAIVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYAASWSGRRFTVVDTGGWEPDA 103

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             +++    +  L +  AD I+L+ +          +   +        I    K D   
Sbjct: 104 KGLQQAVAAQAELAMRTADAIVLVVDATVGATATDEAVARVLRRSKTPVILAANKVDSER 163

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              E              +S+  G G  +L++ I   L    ++ P 
Sbjct: 164 LEAEAASLWSLGLGEPFTVSAAHGRGAGDLLDVILEKLPETPREGPA 210


>gi|122702551|emb|CAL88465.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRALN 167


>gi|122702263|emb|CAL88322.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700667|emb|CAL87922.1| GTPase [Helicobacter pylori]
 gi|122700867|emb|CAL88022.1| GTPase [Helicobacter pylori]
 gi|122701573|emb|CAL88176.1| GTPase [Helicobacter pylori]
 gi|122702389|emb|CAL88385.1| GTPase [Helicobacter pylori]
 gi|122702437|emb|CAL88409.1| GTPase [Helicobacter pylori]
 gi|122702443|emb|CAL88412.1| GTPase [Helicobacter pylori]
 gi|122702465|emb|CAL88423.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|15605436|ref|NP_220222.1| GTP-binding protein EngA [Chlamydia trachomatis D/UW-3/CX]
 gi|255311532|ref|ZP_05354102.1| GTP-binding protein EngA [Chlamydia trachomatis 6276]
 gi|255317833|ref|ZP_05359079.1| GTP-binding protein EngA [Chlamydia trachomatis 6276s]
 gi|255349095|ref|ZP_05381102.1| GTP-binding protein EngA [Chlamydia trachomatis 70]
 gi|255503632|ref|ZP_05382022.1| GTP-binding protein EngA [Chlamydia trachomatis 70s]
 gi|255507311|ref|ZP_05382950.1| GTP-binding protein EngA [Chlamydia trachomatis D(s)2923]
 gi|8134429|sp|O84709|DER_CHLTR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|3329158|gb|AAC68298.1| GTPase/GTP-binding protein [Chlamydia trachomatis D/UW-3/CX]
 gi|289525747|emb|CBJ15228.1| GTP-binding protein [Chlamydia trachomatis Sweden2]
 gi|296435319|gb|ADH17497.1| GTP-binding protein EngA [Chlamydia trachomatis E/150]
 gi|296436247|gb|ADH18421.1| GTP-binding protein EngA [Chlamydia trachomatis G/9768]
 gi|296437176|gb|ADH19346.1| GTP-binding protein EngA [Chlamydia trachomatis G/11222]
 gi|296438107|gb|ADH20268.1| GTP-binding protein EngA [Chlamydia trachomatis G/11074]
 gi|296439036|gb|ADH21189.1| GTP-binding protein EngA [Chlamydia trachomatis E/11023]
 gi|297140608|gb|ADH97366.1| GTP-binding protein EngA [Chlamydia trachomatis G/9301]
 gi|297748834|gb|ADI51380.1| GTP-binding protein [Chlamydia trachomatis D-EC]
 gi|297749714|gb|ADI52392.1| GTP-binding protein [Chlamydia trachomatis D-LC]
          Length = 490

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 91/257 (35%), Gaps = 35/257 (13%)

Query: 154 LSSLYGQWID----KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND----ISS 205
           L     Q        +    +  E +L   E     +  + E L +   L  +    +  
Sbjct: 153 LLERIRQIAQIPVPSVEEQDAVQEDELPSEEAAISLHAFADETLFENESLSQEEASFLEE 212

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            ++Q      +    K+ ++GH N GKSS+ NAL K++  I  + PGTTRD + +     
Sbjct: 213 LVAQTATPAPVDRPLKVALIGHPNVGKSSIINALLKEERCITDNSPGTTRDNIDVAYTHN 272

Query: 266 GYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK---- 318
                  DTAG+R+T    + VE     RT   +   D+ LL+ +   +      +    
Sbjct: 273 NKEYVFIDTAGLRKTKSIKNSVEWMSSSRTEKAISRTDICLLVIDATQQLSYQDKRILSM 332

Query: 319 ----NIDFIFIGTKSDLY----------------STYTEEYDHLISSFTGEGLEELINKI 358
                   + +  K DL                     +     IS+     L ++ + I
Sbjct: 333 IARYKKPHVILVNKWDLMFGVRMEHYVQDLRKMDPYIGQARILCISAKQRRNLLQIFSAI 392

Query: 359 KSILSNKFKKLPFSIPS 375
             I +    KL  S+ +
Sbjct: 393 DDIYTIATTKLSTSLVN 409



 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 18/192 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-R 278
            +I ILG  N GKSSLFN L K+ +AIV    GTTRD L  ++     ++ + DT G+ +
Sbjct: 1   MRIAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGEIRAWDSIIHVIDTGGVDQ 60

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKSD 330
           E+ D  +K+  ++     E A ++LL+ +I    +K++    K         I +  K+D
Sbjct: 61  ESTDRFQKQIHQQALAAAEEASVLLLVVDIRCGITKQDEELAKRLLPLKKPLILVMNKAD 120

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                   ++            S+   + ++ L+ +I+ I       +       +  L 
Sbjct: 121 SQQDLQRIHEFYGLGISDMIATSASHDKHIDLLLERIRQIAQIPVPSVEEQDAVQEDELP 180

Query: 382 HLSQTVRYLEMA 393
                +     A
Sbjct: 181 SEEAAISLHAFA 192


>gi|122701379|emb|CAL88079.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRAL 166


>gi|122700891|emb|CAL88034.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKATQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122701671|emb|CAL88225.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|122701633|emb|CAL88206.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMSKSFNISVSHNRGISALIDAILNTLN 167


>gi|122700791|emb|CAL87984.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + + L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNAL 166


>gi|76789443|ref|YP_328529.1| GTP-binding protein EngA [Chlamydia trachomatis A/HAR-13]
 gi|237803133|ref|YP_002888327.1| GTP-binding protein EngA [Chlamydia trachomatis B/Jali20/OT]
 gi|237805054|ref|YP_002889208.1| GTP-binding protein EngA [Chlamydia trachomatis B/TZ1A828/OT]
 gi|123606653|sp|Q3KKZ1|DER_CHLTA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|76167973|gb|AAX50981.1| GTP-binding protein [Chlamydia trachomatis A/HAR-13]
 gi|231273354|emb|CAX10269.1| GTP-binding protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274367|emb|CAX11162.1| GTP-binding protein [Chlamydia trachomatis B/Jali20/OT]
          Length = 490

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 19/198 (9%)

Query: 154 LSSLYGQWID----KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND----ISS 205
           L     Q        +    +  E +L   E     +  + E L +   L  +    +  
Sbjct: 153 LLERIRQIAQIPVPSVEEQDAVQEDELPSEEAAISLHAFADETLFENESLSQEEASFLEE 212

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            ++Q      +    K+ ++GH N GKSS+ NAL K++  I  + PGTTRD + +     
Sbjct: 213 LVAQTATPAPVDRPLKVALIGHPNVGKSSIINALLKEERCITDNSPGTTRDNIDVAYTHN 272

Query: 266 GYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK---- 318
                  DTAG+R+T    + VE     RT   +   D+ LL+ +   +      +    
Sbjct: 273 NKEYVFIDTAGLRKTKSIKNSVEWMSSSRTEKAISRTDICLLVIDATQQLSYQDKRILSM 332

Query: 319 ----NIDFIFIGTKSDLY 332
                   + +  K DL 
Sbjct: 333 IARYKKPHVILVNKWDLM 350



 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 18/192 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-R 278
            +I ILG  N GKSSLFN L K+ +AIV    GTTRD L  ++     ++ + DT G+ +
Sbjct: 1   MRIAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGEIRAWDSIIHVIDTGGVDQ 60

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKSD 330
           E+ D  +K+  ++     E A ++LL+ +I    +K++    K         I +  K+D
Sbjct: 61  ESTDRFQKQIHQQALAAAEEASVLLLVVDIRCGITKQDEELAKRLLPLKKPLILVMNKAD 120

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                   ++            S+   + ++ L+ +I+ I       +       +  L 
Sbjct: 121 SQQDLQRIHEFYGLGISDMIATSASHDKHIDLLLERIRQIAQIPVPSVEEQDAVQEDELP 180

Query: 382 HLSQTVRYLEMA 393
                +     A
Sbjct: 181 SEEAAISLHAFA 192


>gi|292806590|gb|ADE42425.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILRALN 167


>gi|291523016|emb|CBK81309.1| iron-only hydrogenase maturation protein HydF [Coprococcus catus
           GD/7]
          Length = 401

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 16/166 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +++   GE +  G+     G  NAGKSSL NA+  +++A+V+D  GTT D ++  ++L  
Sbjct: 3   LNETPSGERVHIGF----FGRRNAGKSSLVNAVTGQELAVVSDTRGTTTDPVSKAMELLP 58

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFP 317
              V I DT G  +   + E   +++T   +  +D+ +L+ +             EI   
Sbjct: 59  IGPVVIIDTPGFDDEGALGELR-VRKTRQILNKSDVAVLVADCTEGLKDCDRELIEIFRQ 117

Query: 318 KNIDFIFIGTKSDLYSTYTE--EYDHLISSFTGEGLEELINKIKSI 361
           K I ++ +  K DL   + E  E +  +S+     +E L  KI +I
Sbjct: 118 KEIPWLLVWNKCDLKPEHPEAKENEIYVSATEKIEIEALKEKIAAI 163


>gi|168035467|ref|XP_001770231.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678448|gb|EDQ64906.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 542

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 75/209 (35%), Gaps = 33/209 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIR 278
             I I+G  N GKSS+ NAL  ++  IV+ + GTTRD +  +  D  G  +K+ DTAGIR
Sbjct: 239 MAIAIVGKPNVGKSSILNALVGEERTIVSPVSGTTRDAIDTEFADDNGQTLKLIDTAGIR 298

Query: 279 ETDDI------VEKEGIKRTFLEVENADLILLLKEI-NSKKEISF-------PKNIDFIF 324
               +       E   + R F  +  +D++ L+ +  +   E  F        +    I 
Sbjct: 299 RRGAVASAGSRAESLSVNRAFRAIRRSDVVALVIDALDCVTEQDFRLGERIAREGKACII 358

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELI------------NKIKSILSNKFKKLPFS 372
           +  K D                  E L  L              +IK IL          
Sbjct: 359 VVNKWDTIPNKDAMSTVWYDKDVRERLRCLDWAPTVYCSASSGQRIKKILEMAVAAGE-- 416

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
               +R     + T+  +   ++  K   
Sbjct: 417 ----ERQRRLTTATLNQVIRDAVALKQPP 441



 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 68/203 (33%), Gaps = 50/203 (24%)

Query: 204 SSHISQGKLGEIIRNG----YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
              +++ +    +R       KI I+G  N GKS+LFN +A  D+AIV D  G TRD L 
Sbjct: 16  QKRLAKEEFSSELRIPDALLPKIAIVGRPNVGKSALFNRIAGGDIAIVHDEAGVTRDRLY 75

Query: 260 IDLDLEGYLVKISDTAG--------------------------IRETDDIVEKEGI-KRT 292
                  +   + DT G                          I+E  D      I K+ 
Sbjct: 76  TRAFWSTHEFMLVDTGGVLTIPGDGSDAVAVTAPGGEEAVAKAIKEAYDAGLPAMIEKQA 135

Query: 293 FLEVENADLILLLKEINS---KKEISFPK-------NIDFIFIGTKSDLYSTYTEEYDHL 342
              V +AD I+ + +  +     +I           N        K +  +    +    
Sbjct: 136 GAAVSSADSIIFVVDGQAGLTAADIDIANWLRKKHSNKKITLAVNKCESPTKGQLQVAEF 195

Query: 343 I---------SSFTGEGLEELIN 356
                     S+ +G G   L++
Sbjct: 196 WTLGFTPVPVSAISGTGTGNLLD 218


>gi|122701387|emb|CAL88083.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +  +L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRVLN 167


>gi|122700779|emb|CAL87978.1| GTPase [Helicobacter pylori]
 gi|122700875|emb|CAL88026.1| GTPase [Helicobacter pylori]
 gi|122701457|emb|CAL88118.1| GTPase [Helicobacter pylori]
 gi|122701471|emb|CAL88125.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|317374946|sp|B3DXK2|DER_METI4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
          Length = 460

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 20/232 (8%)

Query: 118 FENGKIDLLEAESLADLISSET-----EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           F+   + + EA  +  ++   T     + Q    +      ++ +  +            
Sbjct: 72  FDQISMAVEEAHHILFVVDGRTGLLPLDKQIAKFLREKHKAVTVVVNKLDHPGMEHFCAE 131

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232
            A+L F E        S      I  L   I S  ++ +   I     +I ++G  NAGK
Sbjct: 132 FANLGFEEI----FAVSAAHNLGINQLLEKIFSLGAEERENPIFAPSTRIAVIGQPNAGK 187

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK-- 290
           SSL N+L  +   +V + PGTT D + + +++ G      DTAG+++ + + E   IK  
Sbjct: 188 SSLINSLIGESRLVVHEEPGTTHDAVEVGIEVCGVPFTFIDTAGLKKKNKLQEGLEIKVS 247

Query: 291 -RTFLEVENADLILLLKEINSKKEISFPKN--------IDFIFIGTKSDLYS 333
            RT   +  + L+  + +      +   K            + I  K DL  
Sbjct: 248 GRTVHSINRSHLVWFIIDGQKGITLQDKKIGGLIQKAFKPCMVILNKIDLLE 299



 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS LFN L  K++++V D PG TRD +   +  EG  + + DT G+    
Sbjct: 4   IAIVGRPNVGKSLLFNRLCGKEISLVYDQPGVTRDRIVCCIKKEGKEIVLVDTGGLVFDC 63

Query: 282 DIVEKEG-IKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD-- 330
                +    +  + VE A  IL + +  +      K+I+     K+     +  K D  
Sbjct: 64  QTDLAKSLFDQISMAVEEAHHILFVVDGRTGLLPLDKQIAKFLREKHKAVTVVVNKLDHP 123

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
                   ++    E    +S+    G+ +L+ KI S+
Sbjct: 124 GMEHFCAEFANLGFEEIFAVSAAHNLGINQLLEKIFSL 161


>gi|122702751|emb|CAL88565.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDSILRALN 167


>gi|29840678|ref|NP_829784.1| GTP-binding protein EngA [Chlamydophila caviae GPIC]
 gi|33301057|sp|Q821L7|DER_CHLCV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|29835028|gb|AAP05662.1| GTP-binding protein [Chlamydophila caviae GPIC]
          Length = 474

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 27/183 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI ++G  N GKSS+ N L  ++  I+ ++PGTTRD + I            DTAG+R+
Sbjct: 212 LKIALIGRPNVGKSSIINGLLNEERCIIDNVPGTTRDNVDILYSHNDRSYLFIDTAGLRK 271

Query: 280 ---TDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNI--DFIFIGTK 328
                + +E     RT   +  AD+ LL+ +         K+ +S         I +  K
Sbjct: 272 MKSVKNSIEWISSSRTEKAIARADVCLLVIDAQHHLSSYDKRILSLISKHKKPHIILVNK 331

Query: 329 SDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            DL      E+                   IS+ T   L  + + I  +      K+P  
Sbjct: 332 WDLIEGVRMEHYIRDLRATDVYIGQSRILCISAATKRNLRHIFSSIDELYETVSSKVPTP 391

Query: 373 IPS 375
           + +
Sbjct: 392 VVN 394



 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-R 278
            +I ILG  N GKSSLFN + K+ +AIV    GTTRD L  ++      V++ DT G+ +
Sbjct: 2   LRIAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWSVPVQVIDTGGVDK 61

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD 330
           +++D  +K   K+       AD++LL+ +I            ++  P N   I +  K+D
Sbjct: 62  DSEDHFQKHIYKQALAGANEADILLLVVDIRCGITEQDAELAKMLLPLNKPLILVANKAD 121

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSI 361
            +      ++            S+   + +++L+ +IK++
Sbjct: 122 TFKDEHRIHELYKLGISEILAVSASHDKHIDKLLQRIKTL 161


>gi|254431559|ref|ZP_05045262.1| GTP-binding protein Era [Cyanobium sp. PCC 7001]
 gi|197626012|gb|EDY38571.1| GTP-binding protein Era [Cyanobium sp. PCC 7001]
          Length = 353

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 36/220 (16%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           +  +         R+G+ + ++G  N GKS+L N L  + VAI + +  TTR+ L   L 
Sbjct: 35  ARLLGDNPAAAAFRSGF-VALIGRPNVGKSTLLNQLVGQKVAITSPVAQTTRNRLRAILT 93

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFP 317
                + + DT GI +   ++ +  +K     +   D++LLL + + +        +   
Sbjct: 94  TPTAQLVLLDTPGIHKPHHLLGERLVKTARGAIGEVDVVLLLVDGSQRAGRGDGFIVELL 153

Query: 318 KNI--DFIFIGTKSDLYS------------------------TYTEEYD---HLISSFTG 348
           ++          K DL S                          +E  D   H +S+ TG
Sbjct: 154 RHCRAPVHVALNKHDLVSGDQAAALAQSYRDLLGGRGDVAMPERSEPLDWPLHPVSALTG 213

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           EG  EL+  + S L       P    S +     +++ +R
Sbjct: 214 EGTAELVEALSSDLPPGPHLYPADAVSDQPEQLLMAELIR 253


>gi|195954217|gb|ACG58814.1| YphC [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  XLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNXNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L 
Sbjct: 129 EKERXYAFSSFGMPKSFNISVSHNRGISXLIDAILSXLB 167


>gi|122700623|emb|CAL87900.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKSLNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGTPKSFNISVSHNRGISALIDAVLNALN 167


>gi|18075601|emb|CAD11196.1| GTP-binding protein [Helicobacter pylori]
 gi|122700745|emb|CAL87961.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILDTL 166


>gi|73667142|ref|YP_303158.1| GTP-binding protein EngA [Ehrlichia canis str. Jake]
 gi|72394283|gb|AAZ68560.1| Small GTP-binding protein domain:GTP-binding domain [Ehrlichia
           canis str. Jake]
          Length = 439

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 78/174 (44%), Gaps = 13/174 (7%)

Query: 173 EADLDFSEEEDV--QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
              +D+    D     + S E    ++ L   +   + +  L  +  +  ++ I+G  NA
Sbjct: 125 CYTVDYLGHFDFIGPVYISAEHNLGLIDLYEVLLPFVGEHDLDILKSDNIRLSIVGRPNA 184

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE--- 287
           GKS+  N+L  +   IV+   GTTRD + I+   +  +  + DTAG+R+   ++E+    
Sbjct: 185 GKSTFVNSLLGESRMIVSPEAGTTRDSIDIEYQYKDQMFTLIDTAGMRKKAKVIEEIEVS 244

Query: 288 GIKRTFLEVENADLILLLKE----INSKK----EISFPKNIDFIFIGTKSDLYS 333
            + +T   +  +D+++L+ +    I  +     +++       I    K D+ +
Sbjct: 245 SVHKTIGSINRSDIVVLVIDSVYGIEQQDLYIADLAIQNGKALIVALNKWDMIA 298



 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 10/120 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS++FN L  +  AIV++ P  TRD    + DL G   K+ DT G+  
Sbjct: 2   LKIAIVGLPNVGKSTIFNRLTNQKSAIVSNTPNLTRDRREGNADLCGLKFKVIDTGGVDN 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK------NIDFIFIGTKSD 330
           T  +     + +  L +E  D++  + +       K + F K          I +  K +
Sbjct: 62  TIKLS-ALVLGQVKLAIEGCDIVFFVVDAKVEQDDKNLEFAKYLRKSTQKPVILVANKCE 120


>gi|292806466|gb|ADE42363.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|183601656|ref|ZP_02963026.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241190845|ref|YP_002968239.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196251|ref|YP_002969806.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183219262|gb|EDT89903.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249237|gb|ACS46177.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250805|gb|ACS47744.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289178585|gb|ADC85831.1| EngA [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793834|gb|ADG33369.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 710

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 115/297 (38%), Gaps = 51/297 (17%)

Query: 126 LEAESLADLISSETEMQRRLS------MEGMSG--ELSSLYGQWIDKLTHIRSFIEADLD 177
            + E +   I+S+ ++   L+      ++ ++G  +      + + +     +     +D
Sbjct: 333 ADVEGIDSAIASQAQIAVELADSVIFVVDALTGLTQTDERIVKLLRQAGKPVTVAVNKID 392

Query: 178 FSEEEDVQNFSSKEVLNDILFLK--------NDISSHISQGKLGEIIRNGY-------KI 222
               E +     K  L +   +         + +   ++Q K  E   +G+       ++
Sbjct: 393 DQISEYMAAEFWKLGLGEPYPISAMHGRGVGDLLDEAVAQMKSAEKT-SGFLTPSHLRRV 451

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G  N GKSSL N L+  + ++V ++ GTTRD +   + ++G      DTAGI+    
Sbjct: 452 ALVGRPNVGKSSLLNQLSHSERSVVNELAGTTRDPVDEIVTIDGEDYLFIDTAGIKRRQH 511

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTKSDL 331
                E     RT   +E ++L L+L + +   S +++     +       + +  K DL
Sbjct: 512 KLSGAEYYSSLRTQAAIERSELALVLFDASIPISDQDLKVMSTAVDAGRAVVLVFNKWDL 571

Query: 332 YSTYTE---------EYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              +           E+D         +S+ TG     L   +   L +  K++P  
Sbjct: 572 MDEFDRQRMERLWKTEFDRVTWAQRVNLSAKTGWHTNRLAKAMTQALESWDKRIPTG 628



 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 33/246 (13%)

Query: 173 EADLDFSEEEDVQNFSSKEVLNDIL-----------FLKNDISSHISQGKL---GEIIRN 218
            +D+DF E  D+      + + +              L       +        GE  R 
Sbjct: 211 NSDIDFGETLDLMIGLVDDAIEEQAYRQYAANLDDYELDEGDEGLLDGSAFSADGESDRR 270

Query: 219 GYK--IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
                I ++G  N GKS+L N +  +  A+V D PG TRD ++ D +  G   K+ DT G
Sbjct: 271 KAVGVIAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGG 330

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTK 328
                + ++     +  + VE AD ++ + +         ++ +   +           K
Sbjct: 331 WEADVEGIDSAIASQAQIAVELADSVIFVVDALTGLTQTDERIVKLLRQAGKPVTVAVNK 390

Query: 329 SD--LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            D  +      E+        + IS+  G G+ +L+++  + + +  K   F  PSH R 
Sbjct: 391 IDDQISEYMAAEFWKLGLGEPYPISAMHGRGVGDLLDEAVAQMKSAEKTSGFLTPSHLRR 450

Query: 380 LYHLSQ 385
           +  + +
Sbjct: 451 VALVGR 456


>gi|122700627|emb|CAL87902.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERSYAFSSFGVPKSFNISVSHNRGISTLIDAVLDALN 167


>gi|18075563|emb|CAD11177.1| GTP-binding protein [Helicobacter pylori]
 gi|122702795|emb|CAL88587.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGVPKSFNISVSHNRGISALIDAVLNALN 167


>gi|168187762|ref|ZP_02622397.1| GTP-binding protein Era [Clostridium botulinum C str. Eklund]
 gi|169294368|gb|EDS76501.1| GTP-binding protein Era [Clostridium botulinum C str. Eklund]
          Length = 294

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 88/209 (42%), Gaps = 24/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +  + ++IV+  P TTR+ +   L  + Y +   DT GI +  
Sbjct: 7   ISIIGRPNVGKSTLTNDILGEKLSIVSCRPQTTRNNIRAVLTRDDYQLVFLDTPGIHKPR 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLK----EINSKKEISFP----KNIDFIFIGTKSD--- 330
             + +  +K      +  DLI+ +     EI+   E+       +      +  K D   
Sbjct: 67  HKLGEYMVKAAETSTDEVDLIVFITTPEGEISKGDELILENIKNRKKPVFLVINKIDENP 126

Query: 331 --LYSTYTEEYDHLI--------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
             L +   ++Y   +        S+   + ++ L+N +   +    K  P  + +  +  
Sbjct: 127 QELVAETLQKYSEYMDFAEIIPISARKSKNVDTLLNLMIKYMPEGPKYYPEDMITDVQER 186

Query: 381 YHLSQTVRYLEMASLNE---KDCGLDIIA 406
           + +S+ +R   +  L+E       ++II+
Sbjct: 187 FVVSEIIREKALKLLSEEVPHGIAVEIIS 215


>gi|122702367|emb|CAL88374.1| GTPase [Helicobacter pylori]
 gi|122702395|emb|CAL88388.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLDALN 167


>gi|122701687|emb|CAL88233.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|18075585|emb|CAD11188.1| GTP-binding protein [Helicobacter pylori]
 gi|122700727|emb|CAL87952.1| GTPase [Helicobacter pylori]
 gi|122700751|emb|CAL87964.1| GTPase [Helicobacter pylori]
 gi|122700921|emb|CAL88049.1| GTPase [Helicobacter pylori]
 gi|122702487|emb|CAL88434.1| GTPase [Helicobacter pylori]
 gi|122702583|emb|CAL88481.1| GTPase [Helicobacter pylori]
 gi|292806536|gb|ADE42398.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILDTLN 167


>gi|218960708|ref|YP_001740483.1| GTP-binding protein [Candidatus Cloacamonas acidaminovorans]
 gi|167729365|emb|CAO80276.1| GTP-binding protein [Candidatus Cloacamonas acidaminovorans]
          Length = 449

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 22/159 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+LFN L +K  AIV    G TRD    D++  G + K+ DT GI   +
Sbjct: 6   VSIVGRPNVGKSTLFNRLCRKRSAIVDFEAGITRDRKYEDVEWNGKIFKLVDTGGIVFNS 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTKSDLY 332
            + ++K  + +  L ++ +DLI+ + +      +  KEI+   +P     + +  K+D  
Sbjct: 66  IETIDKMVLHQVMLAIDESDLIIFMVDAQTGTTDIDKEIAKILYPHKDKVMLVANKADNE 125

Query: 333 STYTEEYDHLISSF-------------TGEGLEELINKI 358
               E YD L   F             TG+ L+ +I +I
Sbjct: 126 KYEWEVYDFLQLGFGDVIPISASQGRNTGDFLDAVIERI 164



 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 11/140 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSS+ N L      IVT+IPGTTRD +            + DTAG+R  
Sbjct: 181 RIAVVGKPNVGKSSIVNLLLGNPKLIVTEIPGTTRDAIDSPFRYHNKDYILIDTAGLRRK 240

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSK---KEISFP-----KNIDFIFIGTKS 329
             +    E     RT   ++  D+++L+   + +   ++I        K  + + +  K 
Sbjct: 241 TRVNYGVEYFSTLRTIEAIDRCDIVVLVLTADEELSVQDIKIASYAKRKMKEIMVVYNKW 300

Query: 330 DLYSTYTEEYDHLISSFTGE 349
           DL    T   +  +     +
Sbjct: 301 DLIEKETNTINKYLKELHYQ 320


>gi|296122493|ref|YP_003630271.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776]
 gi|296014833|gb|ADG68072.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776]
          Length = 496

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 27/184 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKS+  N+LA+ +  IV++IPGTTRD + +  +L+G      DT G+R+
Sbjct: 184 LKLAIVGRRNVGKSTFVNSLAETERMIVSEIPGTTRDSVDVRFELDGKSFVAIDTPGVRK 243

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
                + +E  G+ R    +  A+++L+  +          +        +   IF+  K
Sbjct: 244 RKSLANDIEWYGLARAKRSIRRANVVLMFFDCTQPISRVDKQLVHEIYEYHKPCIFVVNK 303

Query: 329 SDLYSTYTEEYDHLI----------------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
            DL+     E  +                  +  TG+ +++LIN  +SI      ++   
Sbjct: 304 WDLHGDQEMEAWNEYLLQNFASMRHVPLAFITGMTGKNVKKLINLAQSIFKQALMRIGTG 363

Query: 373 IPSH 376
             + 
Sbjct: 364 ELNR 367



 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKSS+ N LA+K +++V    G TRD +   +       ++ DT GI   
Sbjct: 5   KVAIVGRPNVGKSSILNWLAQKRISVVDPTAGVTRDRVMYLMHEGDRYFELVDTGGIGIV 64

Query: 281 D-DIVEKEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSD 330
           D D +  E   +  + ++ ADLIL + + ++              P +   + +  K D
Sbjct: 65  DVDDLSNEIDYQINVGIQEADLILFVVDGSAGLTALDLEVSRRLRPISTRKLVVVNKCD 123


>gi|229820636|ref|YP_002882162.1| small GTP-binding protein [Beutenbergia cavernae DSM 12333]
 gi|229566549|gb|ACQ80400.1| small GTP-binding protein [Beutenbergia cavernae DSM 12333]
          Length = 495

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 17/161 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +    +  G    + DT G     
Sbjct: 61  LAVIGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVRYTAEWAGRPFVLVDTGGWEHDA 120

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
             +     ++  + VE AD ++ + +         E    I        + +  K D   
Sbjct: 121 RGLHARVAEQAEIAVELADAVMFVVDAAVGATDTDERVVRILRKSGKPVLLVANKVDDAR 180

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNK 365
              +               S+  G G  +L++   +IL  +
Sbjct: 181 GEADAAALWNLGLGEPFATSALHGRGSGDLLDAALAILPER 221



 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N+L   +  +V D+ GTTRD +   ++L G      DTAGIR  
Sbjct: 235 RVALVGKPNVGKSSLLNSLTGSERVVVDDVAGTTRDPVDELIELGGRPWVFVDTAGIRRR 294

Query: 281 DDIVE---KEGIKRTFLEVEN 298
               +        RT   +E 
Sbjct: 295 VHQAQGADFYASLRTQAAIEK 315


>gi|122701477|emb|CAL88128.1| GTPase [Helicobacter pylori]
 gi|122702565|emb|CAL88472.1| GTPase [Helicobacter pylori]
 gi|122702569|emb|CAL88474.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILRALN 167


>gi|312793589|ref|YP_004026512.1| gtp-binding protein era [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312875914|ref|ZP_07735904.1| GTP-binding protein Era [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797395|gb|EFR13734.1| GTP-binding protein Era [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180729|gb|ADQ40899.1| GTP-binding protein Era [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 300

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 98/235 (41%), Gaps = 40/235 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  K ++I++  P TTR+ +   L LE   +   DT G+    
Sbjct: 8   VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGVHPPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFPKNIDFIFIGTK 328
           + + +  +K +   ++  DLIL + E             I   KE+  PK    I +  K
Sbjct: 68  NKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIEKLKEVETPK----ILVLNK 123

Query: 329 SDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           SDL S    E                 I++  G   + L++KIK +L    K     + +
Sbjct: 124 SDLASKENIEILKSIFSTKLNFESIVDIAAINGYNCDLLLSKIKELLPEGPKYYLDDMTT 183

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
             R  + +++ +R   + +L+E+      IA   R A           + + +LD
Sbjct: 184 DVRESFIVAEIIREKILLNLSEEVPHGVGIAIE-RFA---------ERENKDILD 228


>gi|292806620|gb|ADE42440.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLRAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRALN 167


>gi|122701355|emb|CAL88067.1| GTPase [Helicobacter pylori]
 gi|122702169|emb|CAL88275.1| GTPase [Helicobacter pylori]
 gi|122702319|emb|CAL88350.1| GTPase [Helicobacter pylori]
 gi|122702421|emb|CAL88401.1| GTPase [Helicobacter pylori]
 gi|122702587|emb|CAL88483.1| GTPase [Helicobacter pylori]
 gi|292806660|gb|ADE42460.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700807|emb|CAL87992.1| GTPase [Helicobacter pylori]
 gi|122700837|emb|CAL88007.1| GTPase [Helicobacter pylori]
 gi|122702163|emb|CAL88272.1| GTPase [Helicobacter pylori]
 gi|122702469|emb|CAL88425.1| GTPase [Helicobacter pylori]
 gi|242255966|gb|ACS88967.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700805|emb|CAL87991.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|122701401|emb|CAL88090.1| GTPase [Helicobacter pylori]
 gi|122701443|emb|CAL88111.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRAL 166


>gi|4467669|emb|CAB37786.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122701469|emb|CAL88124.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRAL 166


>gi|122700767|emb|CAL87972.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|311739376|ref|ZP_07713211.1| ribosome-associated GTPase EngA [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305192|gb|EFQ81260.1| ribosome-associated GTPase EngA [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 526

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 74/176 (42%), Gaps = 17/176 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N    +  A+V D PG TRD ++   D  G    + DT G     
Sbjct: 93  VAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRISYVADWNGQRFLVQDTGGWDPNV 152

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
             +     ++  + +E AD+I+++ +    I    E+   +     +  I +  K D  +
Sbjct: 153 KGIHAAIARQAEVAMETADVIVMVVDTKVGITETDEVMARRLQKSPVPVILVSNKFDSDN 212

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            Y +  +           +S+  G G  +++++I  +   + ++   +    +  L
Sbjct: 213 QYADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRVFPEEPRQTAITSGPRRVAL 268



 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 87/233 (37%), Gaps = 33/233 (14%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
               S +       + ++I     +      I +G + + ++G  N GKSSL N L  ++
Sbjct: 228 PWPVSAQHGRGGADVLDEILRVFPEEPRQTAITSGPRRVALVGKPNVGKSSLLNKLTSEE 287

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENAD 300
            ++V ++ GTT D +   + L+  L K  DTAG+R+        E     RT   ++ A+
Sbjct: 288 RSVVDNVAGTTVDPVDSLVQLDDQLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAE 347

Query: 301 LILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST-----YTEEYDHLISSF- 346
           + ++L + + +          +        +    K DL           E D  +S   
Sbjct: 348 VCIMLIDASEEISEQDQRVLNMVLEAGKALVIAFNKWDLMDEDRRYYLDREIDQQLSHLP 407

Query: 347 ----------TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                     TG  L++L   +   L +  +++     ++      L + +  
Sbjct: 408 WVTRVNISAETGRALQKLEPAMIEALESWDQRVSTGQLNNW-----LREAIAA 455


>gi|122701541|emb|CAL88160.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L+++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|292806696|gb|ADE42478.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + S L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAVLSTLN 167


>gi|253571982|ref|ZP_04849387.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838579|gb|EES66665.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 405

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 27/181 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V+D PGTT D +   +++ G       DT G
Sbjct: 10  NRLHIALFGKRNSGKSSLINALTGQDTALVSDTPGTTTDPVQKAMEIHGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS---------------FPKNID 321
             +  ++  +  I+RT+  VE  D+ LLL    S  E +                 KNI 
Sbjct: 70  FDDEGELGNRR-IERTWKAVEKTDIALLLCAGGSSAEETGEPDFTEELHWLEQLKAKNIP 128

Query: 322 FIFIGTKSDLYSTYT----------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            I +  K+D+                     +S+    G+E +   I   L   F +   
Sbjct: 129 TILLINKADIRKNTASLAIRIKETFGSQPIPVSAKEKTGIELIRQAILEKLPEDFDQQSI 188

Query: 372 S 372
           +
Sbjct: 189 T 189


>gi|122701683|emb|CAL88231.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LIN + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALINAVLNALN 167


>gi|122700707|emb|CAL87942.1| GTPase [Helicobacter pylori]
 gi|122700725|emb|CAL87951.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + + L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNAL 166


>gi|99905855|gb|ABF68622.1| YphC [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|108864612|gb|ABA94923.2| small GTP-binding protein domain containing protein, expressed
           [Oryza sativa Japonica Group]
          Length = 344

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 15/128 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +    +G   K+ DTAGIR  
Sbjct: 54  IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRR 113

Query: 281 DDI------VEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIG 326
             +       E   +KR F  +  +D++ L+ E  +          E    +    + + 
Sbjct: 114 AAVASAGSTTETLSVKRAFRAIRRSDVVALVVEAMACITEQDYKIAERIEKEGKACVIVV 173

Query: 327 TKSDLYST 334
            K D    
Sbjct: 174 NKWDTIPN 181


>gi|18075553|emb|CAD11172.1| GTP-binding protein [Helicobacter pylori]
 gi|122700621|emb|CAL87899.1| GTPase [Helicobacter pylori]
 gi|122702467|emb|CAL88424.1| GTPase [Helicobacter pylori]
 gi|122702741|emb|CAL88560.1| GTPase [Helicobacter pylori]
 gi|122702823|emb|CAL88601.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|4467677|emb|CAB37790.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V+  DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEFLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE     F   + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNFKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDTDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|152967059|ref|YP_001362843.1| GTP-binding protein EngA [Kineococcus radiotolerans SRS30216]
 gi|151361576|gb|ABS04579.1| small GTP-binding protein [Kineococcus radiotolerans SRS30216]
          Length = 496

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 125/333 (37%), Gaps = 54/333 (16%)

Query: 93  NGILEELAKMPNLRLANPGEFSRRAF---ENGKIDLLEAESLADLISSETEMQRRLS--- 146
             ++E++  +   R+A P  ++ R F   + G  +  +AE L   ++ + E+   L+   
Sbjct: 84  EAVVEDVPGVTRDRVAYPANWAGRDFTLVDTGGWE-AKAEGLNLAVADQAELAIELADAV 142

Query: 147 ---MEGMSGEL--SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK- 200
              ++G  G         + + +     + I   +D   +E +        L +   +  
Sbjct: 143 MFVVDGTVGATASDEQVVRLLRRSGRPVTLIANKVDGPRQEALATELWGLGLGEPHPVSA 202

Query: 201 -------NDISSHISQGKLGEIIRNGY-------KIVILGHSNAGKSSLFNALAKKDVAI 246
                  + + + +        +  G        ++ +LG  N GKSS+ N LA  +  +
Sbjct: 203 LHGRGTGDALDAAVKTLPAVSAVGGGLIPEGGPRRVALLGRPNVGKSSMLNKLAGSERVV 262

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLIL 303
           V    GTTRD +   ++L G   +  DTAGIR         +     RT   +E A++ +
Sbjct: 263 VHPTAGTTRDPVDEIIELGGRTWRFVDTAGIRRRVHLTKGADFYASLRTQTALEKAEVAV 322

Query: 304 LLKEIN---SKKEIS-----FPKNIDFIFIGTKSDLYSTYTEEY---------------- 339
           +L + +   ++++I             +    K DL       Y                
Sbjct: 323 VLVDASVPIAEQDIRVISTVVESGRALVVAYNKWDLTDEERRHYLEREIEKELVQIPWAP 382

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              +S+ TG  +E L+  I + L++   ++P  
Sbjct: 383 RVNVSAQTGRHMERLVPAIDTALASWEMRIPTG 415



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 66/180 (36%), Gaps = 19/180 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +    +  G    + DT G     
Sbjct: 62  LAVVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVAYPANWAGRDFTLVDTGGWEAKA 121

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSD--- 330
           + +      +  L +E AD ++ + +       + ++ +   +        I  K D   
Sbjct: 122 EGLNLAVADQAELAIELADAVMFVVDGTVGATASDEQVVRLLRRSGRPVTLIANKVDGPR 181

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                  L+     E  H +S+  G G  + ++     L          IP        L
Sbjct: 182 QEALATELWGLGLGE-PHPVSALHGRGTGDALDAAVKTLPAVSAVGGGLIPEGGPRRVAL 240


>gi|312127538|ref|YP_003992412.1| gtp-binding protein era [Caldicellulosiruptor hydrothermalis 108]
 gi|311777557|gb|ADQ07043.1| GTP-binding protein Era [Caldicellulosiruptor hydrothermalis 108]
          Length = 300

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 98/235 (41%), Gaps = 40/235 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  K ++I++  P TTR+ +   L LE   +   DT G+    
Sbjct: 8   VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGVHPPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFPKNIDFIFIGTK 328
           + + +  +K +   ++  DLIL + E             I   KE+  PK    I +  K
Sbjct: 68  NKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIEKLKEVETPK----ILVLNK 123

Query: 329 SDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           SDL S    E                 I++  G   + L++KIK +L    K     + +
Sbjct: 124 SDLASKENMEILKSIFSTKLNFESIVDIAAINGYNCDLLLSKIKELLPEGPKYYLDDMTT 183

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430
             R  + +++ +R   + +L+E+      IA   R A           + + +LD
Sbjct: 184 DVRESFIVAEIIREKILLNLSEEVPHGVGIAIE-RFA---------ERENKDILD 228


>gi|167748931|ref|ZP_02421058.1| hypothetical protein ANACAC_03712 [Anaerostipes caccae DSM 14662]
 gi|167651553|gb|EDR95682.1| hypothetical protein ANACAC_03712 [Anaerostipes caccae DSM 14662]
          Length = 395

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 13/162 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           +   I + G  NAGKSS+ NAL  +++AIV+D+ GTT D +   ++L     V + DT G
Sbjct: 10  DRIHIALFGRRNAGKSSIVNALTGQELAIVSDVKGTTTDPVFKAMELLPLGPVVMIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
           + +  ++ EK  +K+    +   D+ L++ +  +          ++   + + ++ +  K
Sbjct: 70  LDDEGELGEKR-VKKAKEVLRKTDIALVIADAETGITEFEQGILDLIRERKLPYLIVYNK 128

Query: 329 SDLYSTY-TEEYDHLI--SSFTGEGLEELINKIKSILSNKFK 367
           +DL      E+ DH    S+ T EG+  L   I  +L  + +
Sbjct: 129 TDLAGRVRAEDNDHACFVSAVTKEGIFGLKEAIGKLLPEEEQ 170


>gi|163746867|ref|ZP_02154224.1| GTP-binding protein EngA [Oceanibulbus indolifex HEL-45]
 gi|161379981|gb|EDQ04393.1| GTP-binding protein EngA [Oceanibulbus indolifex HEL-45]
          Length = 493

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 18/157 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAAKLADLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD ++    + T   V+ AD+ L + +             EI   K+   I  G K++
Sbjct: 63  VTDDSLQGRMRRLTERAVDMADICLFMIDARVGVTPSDMVFAEILRKKSAHVILAGNKAE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKI 358
             +      +           +S+  GEGL +L + +
Sbjct: 123 GKAADAGMIEAYSLGLGEPIRLSAEHGEGLNDLYSML 159



 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 78/201 (38%), Gaps = 36/201 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-----YLVKISDT 274
            ++ ++G  NAGKS+L N +  +D  +     G TRD +++  +  G       ++I DT
Sbjct: 202 LQVAVVGRPNAGKSTLINQILGEDRLLTGPEAGITRDAISLMTEWAGPDGDPVPMRIFDT 261

Query: 275 AGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFI 323
           AG+R+   I    EK  +      V+ A+++++L +     E        ++  +    +
Sbjct: 262 AGMRKKAKIQEKLEKLSVSDGLRAVKFAEVVVVLLDAEIPFEQQDLRIADLAEREGRAVV 321

Query: 324 FIGTKSDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNK 365
               K D+     ++                      +S+ TG GL+ L   I       
Sbjct: 322 VAVNKWDIEENRQDKLRELKESFERLLPQLRGAPLITVSAKTGRGLDRLQAAIMRAYEVW 381

Query: 366 FKKLPFSIPSHKRHLYHLSQT 386
            +++  +     R L  + + 
Sbjct: 382 NRRI--TTAQLNRWLSGMMEA 400


>gi|122702699|emb|CAL88539.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       +S     G+  LI+ + S L+
Sbjct: 129 EKERAYAFSSFGIPKSFNVSVSHNRGISALIDAVLSALN 167


>gi|122702637|emb|CAL88508.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + ++L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNVL 166


>gi|317452835|emb|CBL87853.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|292806618|gb|ADE42439.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700639|emb|CAL87908.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI  + + L+
Sbjct: 129 EKERAYAFSSFGTPKSFNISVSHNRGISALIEAVLNALN 167


>gi|99905873|gb|ABF68631.1| YphC [Helicobacter pylori]
          Length = 170

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|302527998|ref|ZP_07280340.1| ribosome-associated GTPase EngA [Streptomyces sp. AA4]
 gi|302436893|gb|EFL08709.1| ribosome-associated GTPase EngA [Streptomyces sp. AA4]
          Length = 493

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 108/294 (36%), Gaps = 30/294 (10%)

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQR-RLSMEGMSGELSSLYGQWIDKLTH 167
           +         +  ++ +  A+++  ++ +         ++  +            +K+  
Sbjct: 108 DATGLQASVAQQAEMAMQTADAVLLVVDATVGATATDEAVARVLRRSKKPVLLAANKVDD 167

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL--GEIIRNGYKIVIL 225
            R   +    +S      +  S         L + I + + +     G       ++ ++
Sbjct: 168 DRLLADTASLWSLGLGEPHPVSALHGRSSGDLLDSIMAALPEAPREAGTATAGPRRVALV 227

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DD 282
           G  N GKSSL N L+ +  ++V  + GTT D +   ++L+G + +  DTAG+R+     D
Sbjct: 228 GKPNVGKSSLLNRLSGEQRSVVDSVAGTTVDPVDSLVELDGEIWRFVDTAGLRKRVNFAD 287

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS- 333
             E     RT   ++ A++ L+L + +            +        + +  K DL   
Sbjct: 288 GAEYYASLRTKTAIDAAEVALVLLDASEPLTEQDLRVLTMVVEAGRACVLVFNKWDLVDE 347

Query: 334 ----TYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   E D             +S+ TG  + +L   +++ L++  +++   
Sbjct: 348 DRRYAMVRELDRGLVRVPWAEKVNVSALTGRAVRKLAPALRTALASWDQRVSTG 401



 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D    G    + DT G  E D
Sbjct: 50  LAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVAYDAFWAGRRFTLVDTGGW-EPD 108

Query: 282 DIVEKEGI-KRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD-- 330
               +  + ++  + ++ AD +LL+ +          +   +        +    K D  
Sbjct: 109 ATGLQASVAQQAEMAMQTADAVLLVVDATVGATATDEAVARVLRRSKKPVLLAANKVDDD 168

Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                   L+S    E  H +S+  G    +L++ I + L    ++   +    +R
Sbjct: 169 RLLADTASLWSLGLGE-PHPVSALHGRSSGDLLDSIMAALPEAPREAGTATAGPRR 223


>gi|229586356|ref|YP_002844857.1| GTP-binding protein Era [Rickettsia africae ESF-5]
 gi|228021406|gb|ACP53114.1| GTP-binding protein Era [Rickettsia africae ESF-5]
          Length = 339

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 20/161 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E
Sbjct: 53  VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFE 112

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE-INSKKEISF-------PKNIDFIFIGTKSDL 331
               +EK  ++  +  + +ADL+LL+ + + S  +I+          NI  IF+  K D+
Sbjct: 113 PKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLLNKIDI 172

Query: 332 YSTYTEEYD------------HLISSFTGEGLEELINKIKS 360
            S Y  +                IS+ +G+ ++ L+  I S
Sbjct: 173 ESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 213


>gi|99905881|gb|ABF68635.1| YphC [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILRAL 166


>gi|18075581|emb|CAD11186.1| GTP-binding protein [Helicobacter pylori]
 gi|122702305|emb|CAL88343.1| GTPase [Helicobacter pylori]
 gi|122702307|emb|CAL88344.1| GTPase [Helicobacter pylori]
 gi|122702321|emb|CAL88351.1| GTPase [Helicobacter pylori]
 gi|122702353|emb|CAL88367.1| GTPase [Helicobacter pylori]
 gi|122702799|emb|CAL88589.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGVPKSFNISVSHNRGISALIDAVLNALN 167


>gi|292806634|gb|ADE42447.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|242255906|gb|ACS88937.1| GTPase [Helicobacter pylori]
 gi|242255908|gb|ACS88938.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGIGALIDAILSAL 166


>gi|122702763|emb|CAL88571.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + + L
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLNAL 166


>gi|122702573|emb|CAL88476.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSAL 166


>gi|122701453|emb|CAL88116.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALN 167


>gi|122702237|emb|CAL88309.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +     I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVNGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALN 167


>gi|226503143|ref|NP_001146320.1| hypothetical protein LOC100279896 [Zea mays]
 gi|219886617|gb|ACL53683.1| unknown [Zea mays]
          Length = 653

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 15/148 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +    +G   K+ DTAGIR  
Sbjct: 363 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTADGEKYKLIDTAGIRRR 422

Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIG 326
             ++      E   +KR F  +  +D++ L+ E  +          E    +    + + 
Sbjct: 423 TAVISAGSTTESLSVKRAFRAIRRSDVVALVIEAMACVTEQDYKIAERIEKEGKACVIVV 482

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEEL 354
            K D       E          E L  L
Sbjct: 483 NKWDTIPNKNHESTTHYEQDVREKLRIL 510



 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 84/240 (35%), Gaps = 58/240 (24%)

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKND--ISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           A  D ++    +     +V      +++   +S HI    L        K+ I+G  N G
Sbjct: 112 AAADLAKRLARELHIDDDVREKRRNIRDKTSVSKHIPDNLL-------PKVAIIGRPNVG 164

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-------------- 277
           KS+LFN L   + AIV D PG TRD L        +   + DT G+              
Sbjct: 165 KSALFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGDHEFMVIDTGGVITLSKSQAGVMEEL 224

Query: 278 ---------------RETDDIVEKEGI-KRTFLEVENADLILLLKE-----INSKKEIS- 315
                          RE         I K+    V+ A +IL + +     + +  EIS 
Sbjct: 225 AVTTTVGMDGIPFATREAAIARMPSMIEKQAVAAVDEASVILFVVDGQAGLVAADIEISD 284

Query: 316 -FPKNIDFIFIG---TKSDLYSTYT-EEYDHL--------ISSFTGEGLEELINKIKSIL 362
              +N     I     K +       +  D          IS+ TG G  +L++ + S L
Sbjct: 285 WLRRNYSDKCILLAVNKCESPRKGQMQALDFWSLGFSPLPISAITGTGTGDLLDLVCSEL 344


>gi|122701363|emb|CAL88071.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I + +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRAL 166


>gi|122700831|emb|CAL88004.1| GTPase [Helicobacter pylori]
 gi|122700869|emb|CAL88023.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|18075603|emb|CAD11197.1| GTP-binding protein [Helicobacter pylori]
 gi|122700743|emb|CAL87960.1| GTPase [Helicobacter pylori]
 gi|122700913|emb|CAL88045.1| GTPase [Helicobacter pylori]
 gi|122702779|emb|CAL88579.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|325280072|ref|YP_004252614.1| GTP-binding protein Era-like-protein [Odoribacter splanchnicus DSM
           20712]
 gi|324311881|gb|ADY32434.1| GTP-binding protein Era-like-protein [Odoribacter splanchnicus DSM
           20712]
          Length = 304

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 7/142 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I+T    TTR  +   ++ + Y +  SDT G+ +  
Sbjct: 18  VNIVGNPNVGKSTLMNRLVGEKISIITSKSQTTRHRIKGIVNTDDYQIVFSDTPGVVKPS 77

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
             +++  ++ +   + +AD+IL + ++      +  KN+DFI    KSD+         +
Sbjct: 78  YKMQEYMLEFSKSALVDADIILYVTDVVE----NIEKNLDFIDKVNKSDIPVLL---VIN 130

Query: 342 LISSFTGEGLEELINKIKSILS 363
            I   T E LE L +K KS++ 
Sbjct: 131 KIDLTTQEKLEALFDKWKSLIP 152


>gi|239618466|ref|YP_002941788.1| GTP-binding protein Era [Kosmotoga olearia TBF 19.5.1]
 gi|239507297|gb|ACR80784.1| GTP-binding protein Era [Kosmotoga olearia TBF 19.5.1]
          Length = 305

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 24/206 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G  + ++G  N GKSSL N L  + VAIV+D   TTR+ +   +  E   V   DT 
Sbjct: 7   YRSGI-VSLVGKPNVGKSSLVNQLVGEKVAIVSDKVQTTRNRIGGIVTTERGQVIFYDTP 65

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGT 327
           GI +    +    +K T   +  +DLI  + +I+    K +    K     NI    +  
Sbjct: 66  GIHKPLHKLGGYLVKITVSALNGSDLIAAILDISDGIKKSDFLVAKHVNSSNIPVFLVIN 125

Query: 328 KSDLYSTYTE---------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           K D+  T  +               E    +S+ TGEG++E +  +   +       P  
Sbjct: 126 KIDVVKTRKKITEFLEEGTKLFKNVEKTFPVSAITGEGIKEFLEAVIERMPPGPPLYPED 185

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEK 398
           + + +   +  S+ +R   +    E+
Sbjct: 186 VITDRSARFMASEIIREKILLLTKEE 211


>gi|122702343|emb|CAL88362.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERTYAFSSFGMPKSFNISVSHNRGISALIHAILRALN 167


>gi|122701397|emb|CAL88088.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +  S       K        N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPGDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLN 167


>gi|122700883|emb|CAL88030.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700919|emb|CAL88048.1| GTPase [Helicobacter pylori]
 gi|122701631|emb|CAL88205.1| GTPase [Helicobacter pylori]
 gi|122702527|emb|CAL88453.1| GTPase [Helicobacter pylori]
 gi|292806412|gb|ADE42336.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|325846572|ref|ZP_08169487.1| ribosome biogenesis GTPase Der [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481330|gb|EGC84371.1| ribosome biogenesis GTPase Der [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 438

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 82/207 (39%), Gaps = 30/207 (14%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   I   K    + +  +I I+G  NAGKSSL N L  ++  IVTDI GTTRD 
Sbjct: 155 DLLDKVVESIDFSKFDTDL-DATRIAIIGKPNAGKSSLVNHLLNEERMIVTDIAGTTRDA 213

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +      +     + DTAG+R      D +E    +RTF  V+++++ L L +       
Sbjct: 214 IDTYWQYKDNNYVLIDTAGLRRKNKVSDNIEYYANQRTFDAVDSSEICLFLIDATVGVTE 273

Query: 309 --NSKKEISFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTG 348
                   +  K    I    K D     T                        IS   G
Sbjct: 274 QDTKIAGYAHNKRKAIIIAVNKWDKVEKETNTMRNMEREIRNKLSFALYAPIIFISVLKG 333

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           + + +L+N I+ + SN   ++   + +
Sbjct: 334 QRITDLLNLIEIVNSNYHTRIKTGVLN 360



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 15/156 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G +N GKS+LFN L  K  AI  D  G TRD +   ++  G    ++DT G+    
Sbjct: 6   VTLVGRTNVGKSTLFNKLVGKRKAITEDENGVTRDRVYDKVEWTGKEFILADTGGLDISN 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPK---NIDFIFIGTKSDLY 332
            +I+ +E   +    +  +DLIL + +          EIS      N   I +  K D  
Sbjct: 66  KEIMNQEIKSQVEKALLESDLILFVVDGREGINPHDFEISSELRKYNKKVIVVANKIDRE 125

Query: 333 STYTEEYDHLI------SSFTGEGLEELINKIKSIL 362
           +     YD          + + EG + L + +  ++
Sbjct: 126 TIPDHIYDFYQFGFDDLVTISAEGSKNLGDLLDKVV 161


>gi|297161654|gb|ADI11366.1| GTP-binding protein EngA [Streptomyces bingchenggensis BCW-1]
          Length = 488

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 21/237 (8%)

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
            + +     D    E  D +     E+  +  F   ++   ++    G +      + ++
Sbjct: 1   MNDQIHTGGDQQHGELGDAEYAEFMELAAEEGFDLEEVEGDLAAAGHGPL----PVLAVV 56

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  N GKS+L N +  +  A+V D PG TRD +T + +  G   K+ DT G  +    ++
Sbjct: 57  GRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVTYEAEWSGRRFKVVDTGGWEQDVLGID 116

Query: 286 KEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTE 337
                +    +E AD ++ + +          +  ++        +    K D  S   +
Sbjct: 117 ASVAAQAEFAIEAADAVVFVVDATVGATDTDEAVVKLLRRAGKPVVLCANKVDGPSAEAD 176

Query: 338 EY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
                       + +S+  G G  ++++ +   L     +   +     R +  + +
Sbjct: 177 AAMLWSLGLGEPYPVSALHGRGTGDMLDAVLEALPEAPAQTFGAAIGGPRRIALIGR 233



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 104/281 (37%), Gaps = 31/281 (11%)

Query: 123 IDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
             +  A+++  ++ +         ++  +            +K+    +  +A + +S  
Sbjct: 125 FAIEAADAVVFVVDATVGATDTDEAVVKLLRRAGKPVVLCANKVDGPSAEADAAMLWSLG 184

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKL---GEIIRNGYKIVILGHSNAGKSSLFNA 238
                  S         + + +   + +      G  I    +I ++G  N GKSSL N 
Sbjct: 185 LGEPYPVSALHGRGTGDMLDAVLEALPEAPAQTFGAAIGGPRRIALIGRPNVGKSSLLNK 244

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLE 295
           +A ++  +V ++ GTTRD +   ++L G   K  DTAGIR    + E        RT   
Sbjct: 245 VAGEERVVVNEMAGTTRDPVDELIELGGVTWKFVDTAGIRRRVHLQEGADYYASLRTAAA 304

Query: 296 VENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSD---------LYSTYTEE 338
           VE A+L ++L + +    +        +       +    K D         L      E
Sbjct: 305 VEKAELAVILIDSSESISVQDQRIISMAVEAGRAIVVAYNKWDTLDEERRYYLEREIETE 364

Query: 339 YDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
              +        S+ TG  +E+L+  I++ L+    ++P  
Sbjct: 365 LGQIQWAPRVNVSARTGRHMEKLVPAIETALTGWETRVPTG 405


>gi|242255912|gb|ACS88940.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSAL 166


>gi|320536777|ref|ZP_08036777.1| ribosome-associated GTPase EngA [Treponema phagedenis F0421]
 gi|320146373|gb|EFW37989.1| ribosome-associated GTPase EngA [Treponema phagedenis F0421]
          Length = 473

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 23/182 (12%)

Query: 196 ILFLKNDISSHIS-QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +   ++++   +           N   IVI+G  N GKS+LFN   +K  AI   + G T
Sbjct: 1   MQKEQDELDKELEVSYDYRIRYENTPLIVIVGRPNVGKSTLFNRFLRKRRAITDSVQGVT 60

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRET------DDIVEKEGIKRTFLEVENADLILLLKEI 308
           RD +     + G  V++ DT G + T      +D+++   +++T   +E AD ILLL + 
Sbjct: 61  RDPIEEQAIVNGLPVRLMDTGGFKLTRSGLQDEDVMDSLVVEKTIEALERADRILLLLDA 120

Query: 309 -----NSKKEISFPKNIDFIFIG--TKSDLYSTYTEEYDH---------LISSFTGEGLE 352
                  ++ I F +      I    K++      E Y++          IS+  G+ + 
Sbjct: 121 GHALPEDEEFIQFLRPYWSKLIAAVNKTEGGRLEAEAYNYFKYGFEHLVFISAEHGDNIS 180

Query: 353 EL 354
           EL
Sbjct: 181 EL 182



 Score = 94.9 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 11/139 (7%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            S  +      N  ++ +LG  N GKS+L N L K   +IV+DI GTTRDV+  +   +G
Sbjct: 192 FSDVREAAAKENTIRLALLGKPNTGKSTLANYLTKSSASIVSDIAGTTRDVVHGNFSYKG 251

Query: 267 YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEI------NSKKEI--S 315
               ++DTAGIR+ + +   +E   + R    +++ D++  L +         KK I  +
Sbjct: 252 MHFVLADTAGIRKKNKVTAGIEYYSVLRAIKSLDSTDIVFYLIDAQEGLSEQDKKIIVQA 311

Query: 316 FPKNIDFIFIGTKSDLYST 334
             + +  IF+  K D+ + 
Sbjct: 312 SKRGLGIIFLLNKWDMMAQ 330


>gi|122701451|emb|CAL88115.1| GTPase [Helicobacter pylori]
 gi|242255898|gb|ACS88933.1| GTPase [Helicobacter pylori]
 gi|242255932|gb|ACS88950.1| GTPase [Helicobacter pylori]
 gi|292806698|gb|ADE42479.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRAL 166


>gi|326780198|ref|ZP_08239463.1| ribosome-associated GTPase EngA [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660531|gb|EGE45377.1| ribosome-associated GTPase EngA [Streptomyces cf. griseus
           XylebKG-1]
          Length = 489

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 86/227 (37%), Gaps = 23/227 (10%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +  E  D +     E+     F   ++   + +   G +      + ++G  N GKS+L 
Sbjct: 13  EHGELGDAEYAEFMELAAQEGFDPEEVEGALDEAGHGAL----PVLAVVGRPNVGKSTLV 68

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N +  +  A+V D PG TRD ++ + +  G   K+ DT G  +    ++     +    +
Sbjct: 69  NRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGGWEQDVLGLDASVAAQAEYAI 128

Query: 297 ENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD----------LYSTYTEE 338
           E AD ++ + +          +  ++        +    K D          L+S    E
Sbjct: 129 ETADAVVFVVDSTVGATDTDEAVVKLLRRAGKPVVLCANKVDGQSGEADATALWSLGLGE 188

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             + +SS  G G  ++++ +   L +   +   +     R +  + +
Sbjct: 189 -PYPVSSLHGRGTGDMLDAVLEALPDAPAQKFGTALGGPRRIALIGR 234



 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            + + +   +      K G  +    +I ++G  N GKSSL N +A +D  +V ++ GTT
Sbjct: 202 DMLDAVLEALPDAPAQKFGTALGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTT 261

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKE---- 307
           RD +   ++L G   K  DTAGIR    + E        RT   VE A++ ++L +    
Sbjct: 262 RDPVDELINLGGITWKFIDTAGIRRRVHLQEGADYYASLRTAAAVEKAEVAVVLIDSSES 321

Query: 308 --INSKKEISFPKNIDFIFIG--TKSD---------LYSTYTEEYDH-------LISSFT 347
             +  ++ I+         +    K D         L      E           +S+ T
Sbjct: 322 ISVQDQRIITMAVEAGRALVVAFNKWDTLDEERRYYLEREIETELAQISWAPRVNVSAVT 381

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
           G  +E+L+  I++ +     ++P  
Sbjct: 382 GRHMEKLVPAIETAIEGWETRVPTG 406


>gi|122701627|emb|CAL88203.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + S L+
Sbjct: 129 EKEQSYAFSSFGIPKSFNISVSHNRGISALIDAVLSALN 167


>gi|122700775|emb|CAL87976.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGVPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700595|emb|CAL87886.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKAINLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + ++L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNVLN 167


>gi|122700591|emb|CAL87884.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKEQAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|317472657|ref|ZP_07931972.1| small GTP-binding protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899834|gb|EFV21833.1| small GTP-binding protein [Anaerostipes sp. 3_2_56FAA]
          Length = 395

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 13/162 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           +   I + G  NAGKSS+ NAL  +++AIV+D+ GTT D +   ++L     V + DT G
Sbjct: 10  DRIHIALFGRRNAGKSSIVNALTGQELAIVSDVKGTTTDPVFKAMELLPLGPVVMIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
           + +  ++ EK  +K+    +   D+ L++ +  +          ++   + + ++ +  K
Sbjct: 70  LDDEGELGEKR-VKKAKEVLRKTDIALVIADAETGITEFEQGILDLIRERKLPYLIVYNK 128

Query: 329 SDLYSTY-TEEYDHLI--SSFTGEGLEELINKIKSILSNKFK 367
           +DL      E+ DH    S+ T EG+  L   I  +L  + +
Sbjct: 129 TDLAGRVRAEDNDHACFVSAVTKEGIFGLKEAIGKLLPEEEQ 170


>gi|292806434|gb|ADE42347.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + S L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSALN 167


>gi|122702557|emb|CAL88468.1| GTPase [Helicobacter pylori]
 gi|122702575|emb|CAL88477.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 ERERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122701625|emb|CAL88202.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I + L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNTL 166


>gi|18075559|emb|CAD11175.1| GTP-binding protein [Helicobacter pylori]
 gi|122702347|emb|CAL88364.1| GTPase [Helicobacter pylori]
 gi|122702819|emb|CAL88599.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGVPKSFNISVSHNRGISALIDAVLDALN 167


>gi|242255816|gb|ACS88892.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRAL 166


>gi|122702471|emb|CAL88426.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDVKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLDTLN 167


>gi|122702453|emb|CAL88417.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAVLDTLN 167


>gi|292806564|gb|ADE42412.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ +   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRAL 166


>gi|122700901|emb|CAL88039.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISTLIDAVLRALN 167


>gi|77463250|ref|YP_352754.1| GTP-binding protein EngA [Rhodobacter sphaeroides 2.4.1]
 gi|126462124|ref|YP_001043238.1| GTP-binding protein EngA [Rhodobacter sphaeroides ATCC 17029]
 gi|221639113|ref|YP_002525375.1| GTP-binding protein EngA [Rhodobacter sphaeroides KD131]
 gi|332558128|ref|ZP_08412450.1| GTP-binding protein Der [Rhodobacter sphaeroides WS8N]
 gi|123592083|sp|Q3J2Y1|DER_RHOS4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225847|sp|A3PJF0|DER_RHOS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783164|sp|B9KRT2|DER_RHOSK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|77387668|gb|ABA78853.1| Probable GTP-binding protein [Rhodobacter sphaeroides 2.4.1]
 gi|126103788|gb|ABN76466.1| small GTP-binding protein [Rhodobacter sphaeroides ATCC 17029]
 gi|221159894|gb|ACM00874.1| GTP-binding protein engA [Rhodobacter sphaeroides KD131]
 gi|332275840|gb|EGJ21155.1| GTP-binding protein Der [Rhodobacter sphaeroides WS8N]
          Length = 487

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 18/173 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   D  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGDARLIDLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD ++    + T   VE AD+ L L +             +I   KN   I    K++
Sbjct: 63  VTDDSLQGRMRRLTERAVEMADVCLFLIDGRVGVTPSDEVFADILRRKNAHVILGVNKAE 122

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +      +            S+  GEG+++L + ++ I     ++     P
Sbjct: 123 GRAGDGGAIEAWSLGLGEPIRLSAEHGEGMDDLYHILRPIAEGFAERAAADAP 175



 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 16/153 (10%)

Query: 153 ELSSLYGQWIDKLTHIR---SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209
            LS+ +G+ +D L HI    +   A+   ++   V     +E       L+ D  +H   
Sbjct: 143 RLSAEHGEGMDDLYHILRPIAEGFAERAAADAPVVDVDVPEE----EADLEADPEAHKPT 198

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
                 +++  +I ++G  NAGKS+L N +  +D  +     G TRD +++  +  G  +
Sbjct: 199 ------VKHPLQIAVIGRPNAGKSTLINKIIGEDRLLTGPEAGITRDAISVRSEWHGTPI 252

Query: 270 KISDTAGIRET---DDIVEKEGIKRTFLEVENA 299
           +I DTAG+R+     D +EK  +      V  A
Sbjct: 253 RIFDTAGMRKKARISDKLEKLSVADGLRAVRFA 285


>gi|315637972|ref|ZP_07893157.1| ribosome-associated GTPase EngA [Campylobacter upsaliensis JV21]
 gi|315481820|gb|EFU72439.1| ribosome-associated GTPase EngA [Campylobacter upsaliensis JV21]
          Length = 459

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 102/252 (40%), Gaps = 34/252 (13%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG-- 210
            +       + +L ++       LD      ++ F    +L +    +  +   +     
Sbjct: 126 RVYEFVNFGVKELFNLSVTHNVGLD-ELYAWLEKFLHTSILKNDEE-EQSLEEFLENFDE 183

Query: 211 ----KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
               K  EI  N  KI I+G  N GKSSL NAL K+  ++V+ I GTT D +   +  + 
Sbjct: 184 EKQIKFKEIDENHIKIGIVGRVNVGKSSLLNALVKEQRSVVSSIAGTTIDPVNESVMYKD 243

Query: 267 YLVKISDTAGIRETDDIV--EKEGIKRTFLEVENADLILLLKEIN------SKKEISFPK 318
            L++  DTAGIR+   I   E+  + RT   +EN+ + LL+ + N       ++      
Sbjct: 244 KLLEFIDTAGIRKRGKIQGLERFALNRTEKMLENSQIALLVLDANEGFNELDERIAGLIS 303

Query: 319 NID--FIFIGTKS----------------DLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                 I +  K                 D +          +S+ +G+ +  L++KI  
Sbjct: 304 KHYLGVIIVLNKWDKTRYEFDKVVKELRLDRFKFLAHAPIISVSALSGKRVHILMDKILE 363

Query: 361 ILSNKFKKLPFS 372
           + +N  +K+P +
Sbjct: 364 VFANFTQKIPTA 375



 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 18/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI ++I GTTRD   I +++ G    + D+ G+ E++
Sbjct: 4   IILIGKPNVGKSSLFNRIARQRIAITSEISGTTRDTNKIKVNINGKEALLIDSGGLDESN 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           ++  K   + +    +NAD+IL L +  +  +    K              I  K D   
Sbjct: 64  ELF-KNVKQNSLNAAKNADIILYLVDGKNLPDEEDRKFFYALKKLQKPMALIINKVDNKK 122

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                Y+ +          S     GL+EL   ++  L     K   
Sbjct: 123 DEERVYEFVNFGVKELFNLSVTHNVGLDELYAWLEKFLHTSILKNDE 169


>gi|292806662|gb|ADE42461.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRDV    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|166154045|ref|YP_001654163.1| GTP-binding protein EngA [Chlamydia trachomatis 434/Bu]
 gi|166154920|ref|YP_001653175.1| GTP-binding protein EngA [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335246|ref|ZP_07223490.1| GTP-binding protein EngA [Chlamydia trachomatis L2tet1]
 gi|238687413|sp|B0BAF8|DER_CHLTB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238687426|sp|B0B8S9|DER_CHLT2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|165930033|emb|CAP03516.1| GTP-binding protein [Chlamydia trachomatis 434/Bu]
 gi|165930908|emb|CAP06470.1| GTP-binding protein [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 490

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 87/232 (37%), Gaps = 31/232 (13%)

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKND----ISSHISQGKLGEIIRNGYKIVILGHSNA 230
           +L   E     +  + E L +   L  +    +   ++Q      +    K+ ++GH N 
Sbjct: 178 ELPSEEAAISLHAFADETLFENESLSQEEASFLEELVAQTATPAPVDRPLKVALIGHPNV 237

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKE 287
           GKSS+ NAL K++  I  + PGTTRD + +            DTAG+R+T    + VE  
Sbjct: 238 GKSSIINALLKEERCITDNSPGTTRDNIDVAYTHNNKEYVFIDTAGLRKTKSIKNSVEWM 297

Query: 288 GIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLY------- 332
              RT   +   D+ LL+ +   +      +            + +  K DL        
Sbjct: 298 SSSRTEKAISRTDICLLVIDATQQLSYQDKRILSMIARYKKPHVILVNKWDLMFGVRMEH 357

Query: 333 ---------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                        + +   IS+     L ++ + I  I +    KL  S+ +
Sbjct: 358 YVQDLRKMDPYIGQAHILCISAKQRRNLLQIFSAIDDIYTIATTKLSTSLVN 409



 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 18/192 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-R 278
            +I ILG  N GKSSLFN L ++ +AIV    GTTRD L  ++     ++ + DT G+ +
Sbjct: 1   MRIAILGRPNVGKSSLFNRLCRRSLAIVNSQEGTTRDRLYGEIRAWDSIIHVIDTGGVDQ 60

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKSD 330
           E+ D  +K+  ++     E A ++LL+ +I    +K++    K         I +  K+D
Sbjct: 61  ESTDRFQKQIHQQALAAAEEASVLLLVVDIRCGITKQDEELAKRLLPLKKPLILVMNKAD 120

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                   ++            S+   + ++ L+ +I+ I       +       +  L 
Sbjct: 121 SQQDLQRIHEFYGLGISDMIATSASHDKHIDLLLERIRQIAQIPVPSVEEQDVVQEDELP 180

Query: 382 HLSQTVRYLEMA 393
                +     A
Sbjct: 181 SEEAAISLHAFA 192


>gi|122702161|emb|CAL88271.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L+++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|56421023|ref|YP_148341.1| GTP-binding protein [Geobacillus kaustophilus HTA426]
 gi|56380865|dbj|BAD76773.1| GTP-binding protein [Geobacillus kaustophilus HTA426]
          Length = 302

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 22/198 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +      +   +  
Sbjct: 2   RKEGYKSGF-VAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDDAQIIF 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFI 323
            DT G+ +    +    +K     +   DLIL +              I   K  +    
Sbjct: 61  IDTPGVHKPKHKLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLKEVDTPVF 120

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K D         L   Y + Y       IS+  G  ++ L+ +IK  L    +  P
Sbjct: 121 LVINKIDRVHPDELLPLIDRYKDLYPFAEIVPISALEGNNVDRLLEQIKERLPEGPQYYP 180

Query: 371 FSIPSHKRHLYHLSQTVR 388
               +     + +++ +R
Sbjct: 181 PDQITDHPEQFIIAELIR 198


>gi|260578662|ref|ZP_05846570.1| ribosome-associated GTPase EngA [Corynebacterium jeikeium ATCC
           43734]
 gi|258603159|gb|EEW16428.1| ribosome-associated GTPase EngA [Corynebacterium jeikeium ATCC
           43734]
          Length = 777

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 82/218 (37%), Gaps = 28/218 (12%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAK 241
           D     S +       + +++     +      + +G + + ++G  N GKSSL N +  
Sbjct: 478 DNPYPVSAQHGKGAADVMDEVLRVFPEHPRELSVVSGPRRVALVGRPNVGKSSLLNKITG 537

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVEN 298
           ++ ++V ++ GTT D +   ++LE    K  DTAGIR+        E     RT   ++ 
Sbjct: 538 EERSVVNNVAGTTVDPVDSIVELEEKTWKFVDTAGIRKKTKQARGHEFYASLRTRSAIDA 597

Query: 299 ADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------- 339
           A++++ L + +            +        +    K DL      +            
Sbjct: 598 AEVVVFLVDASEPIAEQDQRVLRMILDSGRALVVAYNKWDLVDEDRRDLLEREIELQLSH 657

Query: 340 -----DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   IS+ TG  L++L   +   L +  +++   
Sbjct: 658 VPWARRVNISAKTGRALQKLEPAMIEALESWDQRISTG 695



 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 72/176 (40%), Gaps = 17/176 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 345 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWSGRRFWVQDTGGWDPDA 404

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
             +     ++    +E AD+I+ + +    I S  E+   K     +  I +  K D  +
Sbjct: 405 KGIHAAIARQAETAMETADVIVFVVDSKVGITSTDEVIARKLQRSKVPVIVVANKCDADA 464

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              +  +           +S+  G+G  ++++++  +     ++L       +  L
Sbjct: 465 QLGDVAEFWALGLDNPYPVSAQHGKGAADVMDEVLRVFPEHPRELSVVSGPRRVAL 520


>gi|122701369|emb|CAL88074.1| GTPase [Helicobacter pylori]
 gi|122701407|emb|CAL88093.1| GTPase [Helicobacter pylori]
 gi|122701441|emb|CAL88110.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTL 166


>gi|122700899|emb|CAL88038.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINSNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRALN 167


>gi|122700635|emb|CAL87906.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKSLNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700629|emb|CAL87903.1| GTPase [Helicobacter pylori]
 gi|122700703|emb|CAL87940.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGVPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|257064345|ref|YP_003144017.1| iron-only hydrogenase maturation protein HydF [Slackia
           heliotrinireducens DSM 20476]
 gi|256791998|gb|ACV22668.1| iron-only hydrogenase maturation protein HydF [Slackia
           heliotrinireducens DSM 20476]
          Length = 416

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 84/182 (46%), Gaps = 28/182 (15%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +++   GE +  G+     G  NAGKSSL NA+  +++A+V+D PGTT D +   ++L  
Sbjct: 12  LNETPSGERVHIGF----FGVRNAGKSSLVNAVTGQNLAVVSDTPGTTTDPVRKAMELLP 67

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEIS--FP 317
              V I DT GI +T ++ E   +++    +++AD+ +L+ +         ++ I     
Sbjct: 68  VGPVVIVDTPGIDDTGELGELR-VEKARRAMDSADVAVLVVDGTQGLGAVDEQLIDEFRK 126

Query: 318 KNIDFIFIGTKSDLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILS 363
           + + +  +  K+DL    T                    +S+  G G+ EL   I ++  
Sbjct: 127 REVPYAVVLNKADLAGEQTASAPAVPEPDEAGVKHVKVSVSALEGWGINELKESIAALAG 186

Query: 364 NK 365
            +
Sbjct: 187 TQ 188


>gi|254385852|ref|ZP_05001171.1| GTP-binding protein engA [Streptomyces sp. Mg1]
 gi|194344716|gb|EDX25682.1| GTP-binding protein engA [Streptomyces sp. Mg1]
          Length = 486

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 80/210 (38%), Gaps = 21/210 (10%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D     D +     E+  +  F   D+   IS+   G +      + ++G  N GKS+L 
Sbjct: 6   DHGALGDAEYAEFMELAAEEGFDVEDVEGAISEAGHGPL----PVLAVVGRPNVGKSTLV 61

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N +  +  A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +
Sbjct: 62  NRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDVLGIDASVAAQAEYAI 121

Query: 297 ENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------- 339
           E AD ++ + +          +  ++        +    K D  S   +           
Sbjct: 122 EAADAVVFVVDAKVGATDTDEAVVKLLRRAGKPVVLCANKVDGQSGEADAASLWSLGLGQ 181

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKL 369
            H +SS  G G  ++++ +   L    ++ 
Sbjct: 182 PHPVSSLHGRGTGDMLDAVLEALPEAPEQT 211



 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 103/282 (36%), Gaps = 32/282 (11%)

Query: 123 IDLLEAESLADLISSE-----TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
             +  A+++  ++ ++     T+      +      +     +   +     +     L 
Sbjct: 119 YAIEAADAVVFVVDAKVGATDTDEAVVKLLRRAGKPVVLCANKVDGQSGEADAASLWSLG 178

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             +   V +   +   + +  +   +     Q   G  +    +I ++G  N GKSSL N
Sbjct: 179 LGQPHPVSSLHGRGTGDMLDAVLEALPEAPEQTFGGAALGGPRRIALIGRPNVGKSSLLN 238

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFL 294
            +AK+D  +V ++ GTTRD +   ++L G   K  DTAGIR+   + +        RT  
Sbjct: 239 KVAKEDRVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRKKVHLQQGADYYASLRTAA 298

Query: 295 EVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYSTYTE--------- 337
            VE A++ ++L +      +        +       +    K D                
Sbjct: 299 AVEKAEVAVILIDTTETISVQDQRIITMAVEAGRAIVIAYNKWDELDEERRYYLEREIET 358

Query: 338 -------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                       +S+ TG  +E+L+  I++ L+    ++P  
Sbjct: 359 EMQQVAWAPRVNVSALTGRHMEKLVPAIETALAGWETRVPTG 400


>gi|122701467|emb|CAL88123.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRALN 167


>gi|122700605|emb|CAL87891.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINSNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSAL 166


>gi|302546520|ref|ZP_07298862.1| ribosome-associated GTPase EngA [Streptomyces hygroscopicus ATCC
           53653]
 gi|302464138|gb|EFL27231.1| ribosome-associated GTPase EngA [Streptomyces himastatinicus ATCC
           53653]
          Length = 487

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 83/226 (36%), Gaps = 21/226 (9%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +  E  D +     E+  +  F    +   ++    G +      + ++G  N GKS+L 
Sbjct: 11  EHGELGDAEYAEFMELAAEEGFDLAQVEGDLAAAGHGPL----PVLAVVGRPNVGKSTLV 66

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N +  +  A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +
Sbjct: 67  NRVLGRREAVVEDKPGVTRDRVTYEAEWSGRRFKVVDTGGWEQDVLGIDASVAAQAEFAI 126

Query: 297 ENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------- 339
           E AD ++ + +          +  ++        +    K D  S   +           
Sbjct: 127 EAADAVVFVVDATVGATDTDEAVVKLLRRAGKPVVLCANKVDGPSGEADAAMLWSLGLGE 186

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
            H +S+  G G  ++++ +   L     +   +     R +  + +
Sbjct: 187 PHPVSALHGRGTGDMLDAVLEALPEAPAQTFGATVGGPRRIALIGR 232



 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N +A ++  +V ++ GTTRD +   ++L G   K  DTAGIR  
Sbjct: 226 RIALIGRPNVGKSSLLNKVAGEERVVVNEVAGTTRDPVDELIELGGITWKFVDTAGIRRR 285

Query: 281 DDIVE---KEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKS 329
             + E        RT   VE A++ ++L + +    +        +       +    K 
Sbjct: 286 VHLQEGADYYASLRTAAAVEKAEVAVILIDTSEPISVQDQRIITMAVEAGRALVIAYNKW 345

Query: 330 D---------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D         L      E   +        S+ TG  +E+L+  I++ L+    ++P  
Sbjct: 346 DTLDEERRYYLEREIETELGQIQWAPRVNVSARTGRHMEKLVPAIETALAGWETRVPTG 404


>gi|122700811|emb|CAL87994.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|317453509|emb|CBL87864.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + S L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSALN 167


>gi|242255910|gb|ACS88939.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKVLNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTL 166


>gi|157964182|ref|YP_001499006.1| GTP-binding protein Era [Rickettsia massiliae MTU5]
 gi|157843958|gb|ABV84459.1| GTP-binding protein Era [Rickettsia massiliae MTU5]
          Length = 347

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 20/161 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E
Sbjct: 61  VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFE 120

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE-INSKKEISF-------PKNIDFIFIGTKSDL 331
               +EK  ++  +  + +ADL+LL+ + + S  +I+          NI  IF+  K D+
Sbjct: 121 PKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDI 180

Query: 332 YSTYTEEYD------------HLISSFTGEGLEELINKIKS 360
            S Y  +                IS+ +G+ ++ L+  I S
Sbjct: 181 ESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 221


>gi|122702345|emb|CAL88363.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|122702171|emb|CAL88276.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L+++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|99905877|gb|ABF68633.1| YphC [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 334 TYTEEYDH---------LISSFTGEGLEELINKIKSILS 363
                Y            IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSSNISVSHNRGISALIDAILSALN 167


>gi|99905867|gb|ABF68628.1| YphC [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDR 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAMLNALN 167


>gi|4467657|emb|CAB37780.1| GTP-binding protein homologue [Helicobacter pylori]
 gi|122701615|emb|CAL88197.1| GTPase [Helicobacter pylori]
 gi|122701685|emb|CAL88232.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|34580888|ref|ZP_00142368.1| GTP-binding protein Era [Rickettsia sibirica 246]
 gi|28262273|gb|EAA25777.1| GTP-binding protein Era [Rickettsia sibirica 246]
          Length = 339

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 20/161 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E
Sbjct: 53  VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFE 112

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE-INSKKEISF-------PKNIDFIFIGTKSDL 331
               +EK  ++  +  + +ADL+LL+ + + S  +I+          NI  IF+  K D+
Sbjct: 113 PKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLLNKIDI 172

Query: 332 YSTYTEEYD------------HLISSFTGEGLEELINKIKS 360
            S Y  +                IS+ +G+ ++ L+  I S
Sbjct: 173 ESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 213


>gi|292806684|gb|ADE42472.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINHNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRALN 167


>gi|292806622|gb|ADE42441.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSALN 167


>gi|122702153|emb|CAL88267.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLRALN 167


>gi|122700705|emb|CAL87941.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILDTL 166


>gi|292806480|gb|ADE42370.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S+L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVL 166


>gi|291276972|ref|YP_003516744.1| putative GTP-binding protein [Helicobacter mustelae 12198]
 gi|290964166|emb|CBG40011.1| putative GTP-binding protein [Helicobacter mustelae 12198]
          Length = 466

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 64/250 (25%), Positives = 106/250 (42%), Gaps = 37/250 (14%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           ++H+ S I   LD    +  +  S +E L +      +     S  K         KI I
Sbjct: 149 ISHLISSIIYVLDLKAPQSQEQESIEEFLENTAPHPQEPKDTPSLPK--------IKIGI 200

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKSSL NAL  KD ++V+ I GTT D +   +  + Y ++  DTAG+R    I 
Sbjct: 201 IGRVNVGKSSLLNALVGKDRSVVSPIEGTTLDPVDEGIIYKDYQLEFVDTAGLRRRGKIR 260

Query: 285 --EKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDF--IFIGTKSDL--- 331
             EK  + RT   +E +D+ LL+ +++       +K  S         I +  K D+   
Sbjct: 261 GLEKFALDRTGKMLEKSDIALLVLDVSTAFVDLDEKISSLVDKYTLGIIIVLNKWDIRIA 320

Query: 332 -YSTYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            Y +  EE               +S+     ++EL  KI  +    ++   F IP+ + +
Sbjct: 321 EYKSIIEELRRKFRFLEYAPIITVSALNKRHIKELKEKILQV----YQNFSFRIPTSQLN 376

Query: 380 LYHLSQTVRY 389
              L  T ++
Sbjct: 377 STILEATKKH 386



 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 18/159 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ILG  N GKSSLFN LA++ +AI +D+ GTT DV    + LEG+ ++I DT GI + 
Sbjct: 3   KIAILGKPNVGKSSLFNRLARERIAITSDVSGTTCDVNKKTIQLEGHPLQILDTGGI-DK 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDL- 331
           ++       K  F   E ADLIL + +     +    +              I  K D  
Sbjct: 62  NNQYFSSIKKFAFQAAEMADLILYVVDGKLPPDDEDKRLFYALEKIQKKCFLIINKIDND 121

Query: 332 --------YSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                   +  +  +    IS     G+  LI+ I  +L
Sbjct: 122 KEKQCAYDFDNFGAKNSFFISISHNRGISHLISSIIYVL 160


>gi|260881589|ref|ZP_05404771.2| GTP-binding protein Era [Mitsuokella multacida DSM 20544]
 gi|260848446|gb|EEX68453.1| GTP-binding protein Era [Mitsuokella multacida DSM 20544]
          Length = 323

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 86/209 (41%), Gaps = 26/209 (12%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            D+  +  Q K     ++G+ I ++G  N GKS+L N L  + +AI++D P TT++ +  
Sbjct: 18  EDMEQNAKQAKH----KSGF-IAVIGRPNVGKSTLINTLIGQKIAIMSDKPQTTQNRILC 72

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------K 312
            L      +   DT GI +    + +  +K     ++  D IL + +   K         
Sbjct: 73  ILTEPDAQIVFLDTPGIHKPKHKLGEYMVKAAEGTLKEVDAILFVVDATEKMGPGEYYIL 132

Query: 313 EISFPKNIDFIFIGTKSDL---------YSTYTEEYDH----LISSFTGEGLEELINKIK 359
           E     +   I +  K DL          S Y ++Y       IS+     L+ L+ ++K
Sbjct: 133 ERLQATSKPVILVVNKLDLIEKEQVLPIISRYADKYPFVGVVPISAKAETNLDSLLTEVK 192

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             L    +  P  + + +     +++ +R
Sbjct: 193 KYLPEGPQYYPEDMVTDQPERLIVAELIR 221


>gi|122702629|emb|CAL88504.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|18075595|emb|CAD11193.1| GTP-binding protein [Helicobacter pylori]
 gi|18075597|emb|CAD11194.1| GTP-binding protein [Helicobacter pylori]
 gi|18075599|emb|CAD11195.1| GTP-binding protein [Helicobacter pylori]
 gi|122700747|emb|CAL87962.1| GTPase [Helicobacter pylori]
 gi|122700749|emb|CAL87963.1| GTPase [Helicobacter pylori]
 gi|122700755|emb|CAL87966.1| GTPase [Helicobacter pylori]
 gi|122700761|emb|CAL87969.1| GTPase [Helicobacter pylori]
 gi|122700795|emb|CAL87986.1| GTPase [Helicobacter pylori]
 gi|122700801|emb|CAL87989.1| GTPase [Helicobacter pylori]
 gi|122700803|emb|CAL87990.1| GTPase [Helicobacter pylori]
 gi|122700817|emb|CAL87997.1| GTPase [Helicobacter pylori]
 gi|122700851|emb|CAL88014.1| GTPase [Helicobacter pylori]
 gi|122700877|emb|CAL88027.1| GTPase [Helicobacter pylori]
 gi|122700923|emb|CAL88050.1| GTPase [Helicobacter pylori]
 gi|122701535|emb|CAL88157.1| GTPase [Helicobacter pylori]
 gi|122701673|emb|CAL88226.1| GTPase [Helicobacter pylori]
 gi|122701681|emb|CAL88230.1| GTPase [Helicobacter pylori]
 gi|122701691|emb|CAL88235.1| GTPase [Helicobacter pylori]
 gi|122702245|emb|CAL88313.1| GTPase [Helicobacter pylori]
 gi|122702295|emb|CAL88338.1| GTPase [Helicobacter pylori]
 gi|122702317|emb|CAL88349.1| GTPase [Helicobacter pylori]
 gi|122702331|emb|CAL88356.1| GTPase [Helicobacter pylori]
 gi|122702363|emb|CAL88372.1| GTPase [Helicobacter pylori]
 gi|122702365|emb|CAL88373.1| GTPase [Helicobacter pylori]
 gi|122702381|emb|CAL88381.1| GTPase [Helicobacter pylori]
 gi|122702383|emb|CAL88382.1| GTPase [Helicobacter pylori]
 gi|122702431|emb|CAL88406.1| GTPase [Helicobacter pylori]
 gi|122702449|emb|CAL88415.1| GTPase [Helicobacter pylori]
 gi|122702477|emb|CAL88429.1| GTPase [Helicobacter pylori]
 gi|122702525|emb|CAL88452.1| GTPase [Helicobacter pylori]
 gi|122702825|emb|CAL88602.1| GTPase [Helicobacter pylori]
 gi|292806442|gb|ADE42351.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806484|gb|ADE42372.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806506|gb|ADE42383.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|317453523|emb|CBL87871.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700633|emb|CAL87905.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKSLNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGVPKSFNISVSHNRGISALIDAVLNALN 167


>gi|292806644|gb|ADE42452.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 KKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLRALN 167


>gi|254458756|ref|ZP_05072180.1| GTPase family protein [Campylobacterales bacterium GD 1]
 gi|207084522|gb|EDZ61810.1| GTPase family protein [Campylobacterales bacterium GD 1]
          Length = 496

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 103/238 (43%), Gaps = 37/238 (15%)

Query: 181 EEDVQNFSSKEVLNDILFLKNDI----SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +ED   F+  +       +++D     +  I +    ++  N  KI I+G +N GKSSL 
Sbjct: 196 DEDDDGFTYWDDDEMDGVIQDDTIYGNNDRIKEFNEEDV--NHIKIAIIGRTNVGKSSLL 253

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFL 294
           NAL  ++ ++V+ + GTT D +   +D +G  +   DTAG+R    I  +EK  + RT  
Sbjct: 254 NALLGEERSVVSSVAGTTIDPIDETIDYKGKQLTFVDTAGLRRRGKILGIEKYALMRTTE 313

Query: 295 EVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEE-------- 338
            ++N+++ L++ + +            +     +  I +  K D+      +        
Sbjct: 314 MLDNSNMALIVLDASEPFLDLDEKIAGLVDSNRLASIIVLNKWDISKREEHDKIIKEVRE 373

Query: 339 --------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
                       IS+ + + +++L + I  I  N  +++P S  +       L + +R
Sbjct: 374 RFKFLAYAPIITISAKSHQRVDKLHDMILEINENYSQRIPTSKIN-----EVLERALR 426



 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 18/161 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSLFN L KK  AI +DI GTTRDV   +  +    V++ DT G+ + 
Sbjct: 3   KIAIIGRPNVGKSSLFNRLVKKRDAITSDIAGTTRDVKRRNTVIINKEVELLDTGGLDKG 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLY 332
            ++ +K   + +      AD+IL + +  S  E    K          +   +  K D  
Sbjct: 63  CELFDKIK-EMSLKAAYKADIILYMVDGKSIPEDEDKKLFYELQNLGKEVALVVNKIDND 121

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
                 +D+          IS        EL++ I S + +
Sbjct: 122 KMKENLWDYYEFGTDAIFGISVAHNRNTVELLDWIASKIPD 162


>gi|292806534|gb|ADE42397.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKTNPNCFLVINKIDNDK 128

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
                Y            IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFFSFGMPKSFNISVSHNRGISALIDAILSAL 166


>gi|122702549|emb|CAL88464.1| GTPase [Helicobacter pylori]
 gi|292806680|gb|ADE42470.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|317452843|emb|CBL87857.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +  +L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLRVLN 167


>gi|320093654|ref|ZP_08025534.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319979402|gb|EFW10884.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 503

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 17/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 70  LAVVGRPNVGKSTLVNRVLGRREAVVQDTPGVTRDRVSYPAEWAGRDFTLVDTGGWEVDV 129

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEI---SFPKNIDFIFIGTKSDLYS 333
             +++   ++    V+ AD ++L+ +       S + I      K    +    K D   
Sbjct: 130 KGLDRSVAEQAETAVDLADAVVLVLDATVGVTASDERIVTMLRAKRKPVVLAANKVDSAV 189

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              +            H +S+  G G+ +L++ + ++L ++    P 
Sbjct: 190 QEADAAYLWGLGMGEPHPVSALHGRGVGDLLDAVAAVLPDESAHAPA 236



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL NALA     +V ++ GTTRD +   ++L+G      DTAGIR  
Sbjct: 244 RVALVGRPNVGKSSLLNALAGSSRVVVNELAGTTRDPVDELIELDGRPWWFVDTAGIRRK 303

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKS 329
                  +     RT   +E A++ L+L + +           +         + +  K 
Sbjct: 304 AHRTTGADYYASIRTQAAIEKAEVALVLIDGSEPLTEQDVRVVQQVIDAGRALVVVTNKW 363

Query: 330 DLYSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL     +                     +++ TG     ++  + + L     ++P  
Sbjct: 364 DLVDEERQRALRGELERDLVQIQWAPRINLAARTGWHTNRIVRALDTALEGWQTRIPTG 422


>gi|308176963|ref|YP_003916369.1| GTP-binding protein EngA [Arthrobacter arilaitensis Re117]
 gi|307744426|emb|CBT75398.1| GTP-binding protein EngA [Arthrobacter arilaitensis Re117]
          Length = 510

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 17/161 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    I DT G     
Sbjct: 75  LAVIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYSAEWMGRPFTIVDTGGWEHDA 134

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
             +      +  +  + AD IL + +      +  E    +   K      +  K D ++
Sbjct: 135 KGIHASVADQAEIAADVADAILFVVDSHVGATATDEAVVKMLRKKGKPVFLVANKVDDFN 194

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
              E              +S+  G G  +L++ +   L   
Sbjct: 195 QEAEAAVLWGLGFGQPWPVSALHGRGTADLLDAVMEKLPAH 235



 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 128 AESLADLISSETEMQR-RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           A+++  ++ S         ++  M  +         +K+       EA + +        
Sbjct: 152 ADAILFVVDSHVGATATDEAVVKMLRKKGKPVFLVANKVDDFNQEAEAAVLWGLGFGQPW 211

Query: 187 FSSKEVLNDILFLKNDI-SSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
             S         L + +     +    G +I +G   ++ ++G  N GKSSL N +A  +
Sbjct: 212 PVSALHGRGTADLLDAVMEKLPAHSAFGGMIPSGGPRRVALIGRPNVGKSSLLNKVAGSE 271

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENAD 300
             +V +  GTTRD +   ++L G + +  DTAGIR    +    +     RT   +E A+
Sbjct: 272 RVVVDEYAGTTRDPVDELVELGGEIWRFVDTAGIRRRQHMAVGSDYYASLRTQTALEKAE 331

Query: 301 LILLLKEINS--------KKEISFPKNIDFIFIGTKSD---------LYSTYTEEYDH-- 341
           + ++L   N           +++       + +  K D         L      +  H  
Sbjct: 332 VAVILLAANEIISEQDVRIIQLAIEAGRAMVIVYNKWDEVDEDRRYYLDQEIERDLAHIE 391

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 IS+ TG   ++L+  + + L +  K++P  
Sbjct: 392 WAPRVNISAKTGWHKDKLVPALNTALDSWDKRIPTG 427


>gi|292806518|gb|ADE42389.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSAL 166


>gi|242255922|gb|ACS88945.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINSNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I + L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNAL 166


>gi|122702675|emb|CAL88527.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I + L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNAL 166


>gi|122700871|emb|CAL88024.1| GTPase [Helicobacter pylori]
 gi|122701701|emb|CAL88240.1| GTPase [Helicobacter pylori]
 gi|122701719|emb|CAL88249.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700713|emb|CAL87945.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|261418494|ref|YP_003252176.1| GTP-binding protein Era [Geobacillus sp. Y412MC61]
 gi|297529346|ref|YP_003670621.1| GTP-binding protein Era [Geobacillus sp. C56-T3]
 gi|319767545|ref|YP_004133046.1| GTP-binding protein Era [Geobacillus sp. Y412MC52]
 gi|261374951|gb|ACX77694.1| GTP-binding protein Era [Geobacillus sp. Y412MC61]
 gi|297252598|gb|ADI26044.1| GTP-binding protein Era [Geobacillus sp. C56-T3]
 gi|317112411|gb|ADU94903.1| GTP-binding protein Era [Geobacillus sp. Y412MC52]
          Length = 302

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 22/198 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +      +   +  
Sbjct: 2   RKEGYKSGF-VAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDDAQIIF 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFI 323
            DT G+ +    +    +K     +   DLIL +              I   K  +    
Sbjct: 61  IDTPGVHKPKHKLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLKEVDTPVF 120

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K D         L   Y + Y       IS+  G  ++ L+ +IK  L    +  P
Sbjct: 121 LVINKIDRVHPDELLPLIDRYKDLYPFAEIVPISALEGNNVDRLLEQIKERLPEGPQYYP 180

Query: 371 FSIPSHKRHLYHLSQTVR 388
               +     + +++ +R
Sbjct: 181 PDQITDHPEQFIIAELIR 198


>gi|122702149|emb|CAL88265.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAVLRALN 167


>gi|122701711|emb|CAL88245.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|15892081|ref|NP_359795.1| GTP-binding protein Era [Rickettsia conorii str. Malish 7]
 gi|21263592|sp|Q92JA9|ERA_RICCN RecName: Full=GTPase Era
 gi|15619203|gb|AAL02696.1| GTP-binding protein Era [Rickettsia conorii str. Malish 7]
          Length = 339

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 20/161 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E
Sbjct: 53  VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFE 112

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE-INSKKEISF-------PKNIDFIFIGTKSDL 331
               +EK  ++  +  + +ADL+LL+ + + S  +I+          NI  IF+  K D+
Sbjct: 113 PKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLLNKIDI 172

Query: 332 YSTYTEEYD------------HLISSFTGEGLEELINKIKS 360
            S Y  +                IS+ +G+ ++ L+  I S
Sbjct: 173 ESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 213


>gi|122700615|emb|CAL87896.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINSNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRAL 166


>gi|122701327|emb|CAL88053.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122702133|emb|CAL88257.1| GTPase [Helicobacter pylori]
 gi|122702141|emb|CAL88261.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILDTLN 167


>gi|158320287|ref|YP_001512794.1| GTP-binding protein Era [Alkaliphilus oremlandii OhILAs]
 gi|189037250|sp|A8MG70|ERA_ALKOO RecName: Full=GTPase Era
 gi|158140486|gb|ABW18798.1| GTP-binding protein Era [Alkaliphilus oremlandii OhILAs]
          Length = 295

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 29/192 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D P TTR+ +      + Y +   DT GI +  
Sbjct: 8   VTIIGRPNVGKSTLMNKIIGEKIAIMSDKPQTTRNKIQCVYTQKDYQIVFLDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIGTKS 329
             + +  +K     ++  D +L + +            I+  + I  P     I +  K 
Sbjct: 68  HKLGQYMVKIATETLKEVDAVLFVVDEGNSIGPGDQYIIDQLQGIDTP----IILVLNKI 123

Query: 330 D---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           D         LY  Y +    ++   IS+  G  +  LIN I   L    K  P  + + 
Sbjct: 124 DKMNAENLNHLYDQYEKTGIFKHIIGISALEGANVGNLINLIVQYLPEGPKYFPEHMITD 183

Query: 377 KRHLYHLSQTVR 388
           +     +++ +R
Sbjct: 184 QPERLIVAELIR 195


>gi|297544408|ref|YP_003676710.1| GTP-binding protein Era [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842183|gb|ADH60699.1| GTP-binding protein Era [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 302

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKS+L NA+ ++ +AI +  P TTR+ +   L  + Y V   DT GI +  
Sbjct: 8   VALIGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDLYS 333
             + +  I+     ++  DLIL + E +++        I   K  +   I +  K DL  
Sbjct: 68  SKLSEFMIEVAKRTLKEVDLILYMIEPDTEIGPGDRYIIEHLKEVDTPVILVVNKIDLVP 127

Query: 334 T---------YTEEYDHLI----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     + +EY        S+   + ++ L  KI S+L    K       + +   
Sbjct: 128 EERIEETIKIFKKEYAFKDVVAISAIENKNIDLLKEKIVSLLPEGPKYYLEDYITDQPEK 187

Query: 381 YHLSQTVR 388
             +++ +R
Sbjct: 188 LIVAEIIR 195


>gi|242255888|gb|ACS88928.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKEQAYAFSSFGMPKSFNISVSHNRGISTLIDAILNALN 167


>gi|122702291|emb|CAL88336.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGTPKSFNISVSHNRGISALIDAVLDALN 167


>gi|18075573|emb|CAD11182.1| GTP-binding protein [Helicobacter pylori]
 gi|122702805|emb|CAL88592.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  TLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERSYAFSSFGAPKSFNISVSHNRGISALIDAVLDALN 167


>gi|307266976|ref|ZP_07548493.1| GTP-binding protein Era [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918025|gb|EFN48282.1| GTP-binding protein Era [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 302

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 82/188 (43%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKS+L NA+ ++ +AI +  P TTR+ +   L  + Y V   DT GI +  
Sbjct: 8   VALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIHGILTTDEYQVIFVDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDLYS 333
             + +  I+     ++  DLIL + E +++        I   K  +   I +  K DL  
Sbjct: 68  SKLSEFMIEVAKRTLKEVDLILYMIEPDTEIGPGDRYIIEHLKEVDTPVILVVNKIDLVP 127

Query: 334 T---------YTEEYDHLI----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     + E+Y+       S+   + ++ L  KI S+L    +       + +   
Sbjct: 128 EKRVEETIKIFKEQYEFKDVVAISAIENKNIDLLKEKIVSLLPEGPRYYLDDYITDQPEK 187

Query: 381 YHLSQTVR 388
             +++ +R
Sbjct: 188 LIVAEIIR 195


>gi|300853996|ref|YP_003778980.1| putative ras-like GTP-binding protein [Clostridium ljungdahlii DSM
           13528]
 gi|300434111|gb|ADK13878.1| predicted ras-like GTP-binding protein [Clostridium ljungdahlii DSM
           13528]
          Length = 293

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 84/196 (42%), Gaps = 23/196 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +  + ++IV+  P TTR+ +   L  + + +   DT GI +  
Sbjct: 7   ITIIGRPNVGKSTLLNNIMGEKLSIVSCRPQTTRNSIQTILTEDDFQLVFVDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIGTKSD-- 330
             +    +K     +++ DL+L L          ++   +E+    N+    +  K D  
Sbjct: 67  HKLGDYMVKAAEDSIKDVDLVLFLTTPELEPGKGDLYILEELKKC-NVPVFLVLNKIDEN 125

Query: 331 -------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      Y+  ++      IS+   + +EELI+ +   +    K  P  + + K+ 
Sbjct: 126 PEQRVAETLKNYSAIFNFVEVIPISALKKKNVEELIDLMVKYMPEGPKYYPDDMITDKQE 185

Query: 380 LYHLSQTVRYLEMASL 395
            + +S+ +R   +  L
Sbjct: 186 KFIVSEIIREKALRLL 201


>gi|292806664|gb|ADE42462.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKAINLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|292806632|gb|ADE42446.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLELFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|99905851|gb|ABF68620.1| YphC [Helicobacter pylori]
 gi|122700757|emb|CAL87967.1| GTPase [Helicobacter pylori]
 gi|122700893|emb|CAL88035.1| GTPase [Helicobacter pylori]
 gi|122701347|emb|CAL88063.1| GTPase [Helicobacter pylori]
 gi|122702159|emb|CAL88270.1| GTPase [Helicobacter pylori]
 gi|122702165|emb|CAL88273.1| GTPase [Helicobacter pylori]
 gi|122702243|emb|CAL88312.1| GTPase [Helicobacter pylori]
 gi|122702253|emb|CAL88317.1| GTPase [Helicobacter pylori]
 gi|122702257|emb|CAL88319.1| GTPase [Helicobacter pylori]
 gi|122702351|emb|CAL88366.1| GTPase [Helicobacter pylori]
 gi|122702359|emb|CAL88370.1| GTPase [Helicobacter pylori]
 gi|122702371|emb|CAL88376.1| GTPase [Helicobacter pylori]
 gi|122702385|emb|CAL88383.1| GTPase [Helicobacter pylori]
 gi|122702627|emb|CAL88503.1| GTPase [Helicobacter pylori]
 gi|242255952|gb|ACS88960.1| GTPase [Helicobacter pylori]
 gi|292806456|gb|ADE42358.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806540|gb|ADE42400.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806544|gb|ADE42402.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806630|gb|ADE42445.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|317452827|emb|CBL87849.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|317453507|emb|CBL87863.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|317453517|emb|CBL87868.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSAL 166


>gi|300787849|ref|YP_003768140.1| GTP-binding protein EngA [Amycolatopsis mediterranei U32]
 gi|299797363|gb|ADJ47738.1| GTP-binding protein EngA [Amycolatopsis mediterranei U32]
          Length = 487

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D    G    + DT G  E D
Sbjct: 44  LAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVAYDAYWGGRKFTLVDTGGW-EPD 102

Query: 282 DIVEKEGI-KRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD-- 330
               +  +  +  L ++ AD +LL+ + +        +  ++        +    K D  
Sbjct: 103 ATGLQASVAAQAELAMQTADAVLLVIDASVGATATDEAVSKVLRRSKKPVLLAANKVDDD 162

Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                   L+S    E  H +S+  G    +L++ I   L    ++   +    +R
Sbjct: 163 RLLADTASLWSLGLGE-PHPVSALHGRSSGDLLDAILKALPESPREGGAATSGPRR 217



 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 105/275 (38%), Gaps = 30/275 (10%)

Query: 128 AESLADLISSETEMQR-RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           A+++  +I +         ++  +            +K+   R   +    +S      +
Sbjct: 121 ADAVLLVIDASVGATATDEAVSKVLRRSKKPVLLAANKVDDDRLLADTASLWSLGLGEPH 180

Query: 187 FSSKEVLNDILFLKNDISSHISQGKL--GEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             S         L + I   + +     G       ++ ++G  N GKSSL N L+ ++ 
Sbjct: 181 PVSALHGRSSGDLLDAILKALPESPREGGAATSGPRRVALVGKPNVGKSSLLNKLSGEER 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADL 301
           ++V  + GTT D +   ++L+G   +  DTAG+R+  +     E     RT   ++ A++
Sbjct: 241 SVVDSVAGTTVDPVDSLVELDGETWRFVDTAGLRKRVNFAAGAEYYASLRTKTAIDAAEV 300

Query: 302 ILLLKEIN---SKKEIS-----FPKNIDFIFIGTKSDLYS-----TYTEEYD-------- 340
            ++L +     S++++             +    K DL           E D        
Sbjct: 301 AIVLLDAAEPLSEQDLRVLTMVVEAGRACVLAFNKWDLVDEDRRYAMVRELDRGLVRVPW 360

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                IS+ TG  + +L   +++ L++  K++P  
Sbjct: 361 AEKVNISALTGRSVRKLAPALRTALASWDKRVPTG 395


>gi|292806570|gb|ADE42415.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAVLRALN 167


>gi|122702391|emb|CAL88386.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGTPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122701459|emb|CAL88119.1| GTPase [Helicobacter pylori]
 gi|122701697|emb|CAL88238.1| GTPase [Helicobacter pylori]
 gi|122702709|emb|CAL88544.1| GTPase [Helicobacter pylori]
 gi|242255954|gb|ACS88961.1| GTPase [Helicobacter pylori]
 gi|292806420|gb|ADE42340.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806432|gb|ADE42346.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806488|gb|ADE42374.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806530|gb|ADE42395.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806648|gb|ADE42454.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806658|gb|ADE42459.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700619|emb|CAL87898.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILRALN 167


>gi|260905263|ref|ZP_05913585.1| GTP-binding protein EngA [Brevibacterium linens BL2]
          Length = 503

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 107/288 (37%), Gaps = 31/288 (10%)

Query: 116 RAFENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           R     ++ +  A+++  ++ + T        +  M            +K+   R  + A
Sbjct: 134 RIAIQSEVAVDMADAVVLVVDATTGPTATDEMVVKMLRRKKKPVILAANKVDDERGELMA 193

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE-IIRNG--YKIVILGHSNAG 231
              +          S      +  L +++ + + +    E  I  G   +I ++G  N G
Sbjct: 194 AELWGLGLGQPFTVSGLHGRGVADLLDEVLTILPEVSAVETRIEEGGPRRIALVGRPNVG 253

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD---IVEKEG 288
           KSSL N L   D  +V ++ GTTRD +   ++L     +  DTAGIR         +   
Sbjct: 254 KSSLLNQLIGSDRVLVDNVAGTTRDPVDELIELGDKQWRFVDTAGIRRRAHQASGADFYA 313

Query: 289 IKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSDLYS------- 333
             RT   +E A+L L+L E+    S++++             +    K DL         
Sbjct: 314 ALRTQTALERAELALVLLEVQEPLSEQDVRIVTTAAEAGRAVVLAFNKWDLLDDERRYYL 373

Query: 334 --TYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 +  H        IS+ TG   ++L+  +++ L     ++P  
Sbjct: 374 EREIERDLAHVAWAPRVNISAKTGRHADKLVPAMEAALEGWDTRIPTG 421



 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 74/188 (39%), Gaps = 21/188 (11%)

Query: 198 FLKNDISSHIS----QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
            L+++  + +     + +  E       + ++G  N GKS+L N +  +  A+V D+PG 
Sbjct: 41  DLEDEDRALLDAYGFEFEAEETRGADPVLAVVGRPNVGKSTLVNRILGRREAVVEDVPGV 100

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           TRD ++   +       + DT G       +      ++ + V+ AD ++L+ +  +   
Sbjct: 101 TRDRVSYRAEWNTKEFTLVDTGGWDSDSKGMASRIAIQSEVAVDMADAVVLVVDATTGPT 160

Query: 314 ISFP--------KNIDFIFIGTKSD-----LYST----YTEEYDHLISSFTGEGLEELIN 356
            +          K    I    K D     L +             +S   G G+ +L++
Sbjct: 161 ATDEMVVKMLRRKKKPVILAANKVDDERGELMAAELWGLGLGQPFTVSGLHGRGVADLLD 220

Query: 357 KIKSILSN 364
           ++ +IL  
Sbjct: 221 EVLTILPE 228


>gi|145224077|ref|YP_001134755.1| GTP-binding protein EngA [Mycobacterium gilvum PYR-GCK]
 gi|315444414|ref|YP_004077293.1| hypothetical protein Mspyr1_28320 [Mycobacterium sp. Spyr1]
 gi|145216563|gb|ABP45967.1| small GTP-binding protein [Mycobacterium gilvum PYR-GCK]
 gi|315262717|gb|ADT99458.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein [Mycobacterium sp. Spyr1]
          Length = 479

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 105/268 (39%), Gaps = 32/268 (11%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +  ++ + T  +    +   SG+   L    +D   + R   +A   +S      +  S 
Sbjct: 127 VDAVVGATTADEAAAKLLQRSGKPVFLAANKVD---NERGEADAAALWSLGLGEPHPISA 183

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVT 248
                +  L + +   +           G   ++ ++G  N GKSSL N L+  + ++V 
Sbjct: 184 MHGRGVADLLDRVIEDLPTISEVNAGGGGGPRRVALVGKPNVGKSSLLNRLSGDERSVVH 243

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLL 305
           D+ GTT D +   ++++G L +  DTAG+R         E     RT   +++A++ ++L
Sbjct: 244 DVAGTTVDPVDSLIEMDGKLWRFVDTAGLRRKVGQASGHEFYASVRTHGAIDSAEVAIVL 303

Query: 306 KEINSK--------KEISFPKNIDFIFIGTKSDLYST-----YTEEYD-----------H 341
            + +            +        +    K DL           E D            
Sbjct: 304 IDASQPLTEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYLLDREIDLQLAQLQWAPRV 363

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKL 369
            IS+ TG  +++L+  +++ L++  K++
Sbjct: 364 NISAKTGRAVQKLVPALETSLASWDKRI 391



 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 19/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD ++ D    G    + DT G     
Sbjct: 43  LAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDASWLGQKFVVQDTGGWEPDA 102

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD--- 330
             +++    +  + +  AD I+ + +          +  ++             K D   
Sbjct: 103 KGLQQLVADQASVAMRTADAIIFVVDAVVGATTADEAAAKLLQRSGKPVFLAANKVDNER 162

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  L+S    E  H IS+  G G+ +L++++   L 
Sbjct: 163 GEADAAALWSLGLGE-PHPISAMHGRGVADLLDRVIEDLP 201


>gi|89095338|ref|ZP_01168256.1| GTP-binding protein EngA [Oceanospirillum sp. MED92]
 gi|89080413|gb|EAR59667.1| GTP-binding protein EngA [Oceanospirillum sp. MED92]
          Length = 479

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI ++G  N GKS+L N +  +D  +V D  GTTRD + I    +     + DTAG+R 
Sbjct: 182 IKIAVVGRPNVGKSTLVNRMLGEDRVVVFDKAGTTRDSVYIPYVRDDKNYTLIDTAGVRR 241

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINS 310
             +I    EK  I +T   V +A +++ + +   
Sbjct: 242 RKNITEAAEKFSIVKTLQAVNDAHVVVFVIDARE 275



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 19/156 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIRE 279
           I ++G  N GKS+LFN L +   A+V D+PG TRD       L  E     + DT GI  
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRKYGEGRLANEEQDYIVVDTGGITG 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEI----SFPKNIDFIFIGTKSD- 330
            +  ++ E  K++   V+ AD++L + +    IN   E+           F  +  K+D 
Sbjct: 65  DEQGIDYEMAKQSLQAVDEADVVLFIVDGRAGINPADEMIANYLRRSEKPFYLVVNKTDG 124

Query: 331 ------LYSTYTEEY--DHLISSFTGEGLEELINKI 358
                 +   Y   +     I++  G G+ +LI  +
Sbjct: 125 LNPDIVVADFYELGFGQPFPIAASHGRGVTQLIEMV 160


>gi|317453527|emb|CBL87873.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKQKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSALN 167


>gi|122702733|emb|CAL88556.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILRAL 166


>gi|122700661|emb|CAL87919.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERIYAFSSFGMPKSFNISVSHNRGISALIDAVLSAL 166


>gi|125973582|ref|YP_001037492.1| GTP-binding protein Era [Clostridium thermocellum ATCC 27405]
 gi|256003401|ref|ZP_05428392.1| GTP-binding protein Era [Clostridium thermocellum DSM 2360]
 gi|281417787|ref|ZP_06248807.1| GTP-binding protein Era [Clostridium thermocellum JW20]
 gi|125713807|gb|ABN52299.1| GTP-binding protein Era [Clostridium thermocellum ATCC 27405]
 gi|255992691|gb|EEU02782.1| GTP-binding protein Era [Clostridium thermocellum DSM 2360]
 gi|281409189|gb|EFB39447.1| GTP-binding protein Era [Clostridium thermocellum JW20]
 gi|316940176|gb|ADU74210.1| GTP-binding protein Era [Clostridium thermocellum DSM 1313]
          Length = 297

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 25/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    + +AI++D P TTR+ +      E Y +   DT GI +  
Sbjct: 8   VSIVGRPNVGKSTLLNKFTGEKIAIMSDKPQTTRNTIRAIDTGEDYQIIYIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-------ISFPKN--IDFIFIGTKSDLY 332
             +    +      +   DL+L L E    +        I   KN       +  K DL 
Sbjct: 68  TKLGDFMVNIALDSLNEVDLVLFLVEATCPQPGPGDLYIIEQLKNLKTPVFCLINKIDLV 127

Query: 333 -------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                         T        IS+   E +E + N+IK +L    K  P  + + +  
Sbjct: 128 EKEQILPIIAAYKDTMEFSQIIPISALEYESVEVVKNEIKKVLPEGPKYFPDDMITDQPE 187

Query: 380 LYHLSQTVRYLEMASLNE---KDCGLDIIA 406
               ++ +R   +  L++      G++++ 
Sbjct: 188 KVIAAELIREKILHLLSDEVPHGVGVEVVT 217


>gi|122701431|emb|CAL88105.1| GTPase [Helicobacter pylori]
 gi|122701437|emb|CAL88108.1| GTPase [Helicobacter pylori]
          Length = 170

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|115486387|ref|NP_001068337.1| Os11g0638000 [Oryza sativa Japonica Group]
 gi|113645559|dbj|BAF28700.1| Os11g0638000 [Oryza sativa Japonica Group]
          Length = 315

 Score =   99 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 15/128 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +    +G   K+ DTAGIR  
Sbjct: 25  IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRR 84

Query: 281 DDI------VEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIG 326
             +       E   +KR F  +  +D++ L+ E  +          E    +    + + 
Sbjct: 85  AAVASAGSTTETLSVKRAFRAIRRSDVVALVVEAMACITEQDYKIAERIEKEGKACVIVV 144

Query: 327 TKSDLYST 334
            K D    
Sbjct: 145 NKWDTIPN 152


>gi|238650708|ref|YP_002916561.1| GTP-binding protein Era [Rickettsia peacockii str. Rustic]
 gi|238624806|gb|ACR47512.1| GTP-binding protein Era [Rickettsia peacockii str. Rustic]
          Length = 339

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 20/161 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E
Sbjct: 53  VSVCIIGRPNNGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFE 112

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE-INSKKEISF-------PKNIDFIFIGTKSDL 331
               +EK  ++  +  + +ADL+LL+ + + S  +I+          NI  IF+  K D+
Sbjct: 113 PKGSLEKAMVRCAWSSLHSADLVLLIIDSLRSFDDITHNILDKLRSLNIVPIFLLNKIDI 172

Query: 332 YSTYTEEYD------------HLISSFTGEGLEELINKIKS 360
            S Y  +                IS+ +G+ ++ L+  I S
Sbjct: 173 ESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 213


>gi|91205994|ref|YP_538349.1| GTP-binding protein Era [Rickettsia bellii RML369-C]
 gi|122425285|sp|Q1RHA4|ERA_RICBR RecName: Full=GTPase Era
 gi|91069538|gb|ABE05260.1| GTP-binding protein Era [Rickettsia bellii RML369-C]
          Length = 295

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 23/204 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           + I+    + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L    + + D
Sbjct: 3   KQIQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLNDTQIILYD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFI 325
           T GI E    +EK  ++  +  + +AD+++L+ +    ++S       K    N+  +F+
Sbjct: 63  TPGIFEPKGTLEKAMVRCAWSSLHSADIVMLIIDSLKPLDSITHDILNKLRSLNVVPVFL 122

Query: 326 GTKSDLYSTYTEEYD------------HLISSFTGEGLEELINKI---KSILSNKFKKLP 370
             K D+ S Y ++                IS+ +GE +++L+  I     I    +++  
Sbjct: 123 LNKIDVESKYIDDTKAFLAENYSDSLLFPISAISGENVDKLLEYITSKAKIAPWLYEEDD 182

Query: 371 FSIPSHKRHLYHLSQTVRYLEMAS 394
            +    +     +++   +L +  
Sbjct: 183 ITDLPMRFIAAEITREQLFLGLQQ 206


>gi|162606364|ref|XP_001713212.1| hypothetical protein GTHECHR2139 [Guillardia theta]
 gi|12580678|emb|CAC26996.1| hypothetical protein [Guillardia theta]
          Length = 496

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 37/215 (17%)

Query: 198 FLKNDISSHISQGKLGEIIRNGY--KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L   I S++   K    +   Y  K+ I+G  N GKS+  N L  +  +IV+D PGTT 
Sbjct: 214 ELLEKIVSYLPNSKK---LSESYTTKVSIIGKPNVGKSTFVNKLLGQYRSIVSDTPGTTS 270

Query: 256 DVLTIDLDLEGY---LVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEIN 309
           D +   +   G    +    DTAGI+    I   +E   + RT   V+ ++ +L + +IN
Sbjct: 271 DSVDSYIS-GGKNCNVYNFIDTAGIKRKKSIEFGIEYFMVNRTLKSVQKSECVLFMIDIN 329

Query: 310 SK--------KEISFPKNIDFIFIGTKSDLY-----------------STYTEEYDHLIS 344
           +          +I   +N   + +  K D                   S  +       S
Sbjct: 330 NGITDQDVKISDIIVKENKCCVILLNKWDKIKKKMSKQTLIDLCKTSLSKLSWAEIIFTS 389

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           +  GE  + + + I S L+   K +  SI +    
Sbjct: 390 ALNGENCKSVFDLIDSALTQYSKYVSTSILNEIIQ 424



 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 23/166 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDV--AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           I ++G SN GKS+L N + K +   +IV D  G T+D++      + Y   ++DT G   
Sbjct: 60  ITVVGRSNVGKSTLINRITKSNKDGSIVHDSEGVTKDIIQRKAFWKNYEFLMTDTGGFSI 119

Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTK 328
                + + K   K+ F  +E + LI+ + +  S   + EI   +      I  I +  K
Sbjct: 120 NYNKKNEIYKNMTKQIFSSIEKSSLIIFVLDFFSQITQDEIELAEYLKFQEIPVILVVNK 179

Query: 329 SDLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSN 364
            +  + + E                S+  G    EL+ KI S L N
Sbjct: 180 CENINIFNENSKIFWSLGFGEPIPISAIHGINTGELLEKIVSYLPN 225


>gi|292806482|gb|ADE42371.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + + L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISTLIDAVLNAL 166


>gi|122701415|emb|CAL88097.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRAL 166


>gi|18310997|ref|NP_562931.1| GTP-binding protein Era [Clostridium perfringens str. 13]
 gi|21263575|sp|Q8XIU8|ERA_CLOPE RecName: Full=GTPase Era
 gi|18145679|dbj|BAB81721.1| GTP-binding protein [Clostridium perfringens str. 13]
          Length = 296

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 25/214 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ I I+G  N GKS+L N L  + ++IV++ P TTR+ +   L  + Y +   DT G
Sbjct: 3   KSGF-ITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNIQTILTGDDYQMIFVDTPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNI--DFIFIGTK 328
           I +    + +  +      +++ DL+L L           K  +   KN     IF+  K
Sbjct: 62  IHKPKHKLGEYMVNSATDSIKDVDLVLFLSNPCEEVGRGDKFIVEQLKNQKAPVIFVLNK 121

Query: 329 SDLYST---------YTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D  S          +++EYD      IS+   +  ++L+  +   L    K  P  + +
Sbjct: 122 VDESSPEKVAKTLELFSKEYDFAEMIPISAMKAKNTDKLLELMVKYLPEGPKYYPDDMIT 181

Query: 376 HKRHLYHLSQTVRYLEMASLNE---KDCGLDIIA 406
             +  + +++ VR   + +L++       +D+I 
Sbjct: 182 DVQERFVVAEIVREKALKNLSQEVPHGIAVDVIQ 215


>gi|325115126|emb|CBZ50682.1| hypothetical protein NCLIV_011480 [Neospora caninum Liverpool]
          Length = 631

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 13/133 (9%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +    + I+G  N GKS L N L     ++V+   GTTRD +   ++ +  + ++ DTAG
Sbjct: 391 KEDVNVAIVGRPNVGKSQLLNRLLGVSRSLVSPEAGTTRDAVDELVERDSVVYRLVDTAG 450

Query: 277 IR-----ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFI 323
           IR     +     E   +KR    +   D+ LL+ +      K+++   K         +
Sbjct: 451 IRRARVVKAQQGTEFVMVKRAERALTRCDVCLLVCDAERGLVKQDVLLAKRIEEEGRAAV 510

Query: 324 FIGTKSDLYSTYT 336
            +  K D   T  
Sbjct: 511 IVMNKWDTVDTEA 523



 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 66/203 (32%), Gaps = 27/203 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +I +LG  N GKSSLFN L  K+     AIV D  GTTRD         G    + DT G
Sbjct: 167 RICLLGRPNVGKSSLFNKLKDKEDLAADAIVRDEDGTTRDRHYAFSVWRGCPFVVVDTGG 226

Query: 277 I-----RETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFI 323
           +     R    +  +E   +    +  A   + + +         + I+          +
Sbjct: 227 LIFEEDRYAAALYAEEIRTQVQFALAEATCAIFVVDGRHGLAGEDEVIADFLRRAGTPVV 286

Query: 324 FIGTKSDLYS----------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               K++ Y                     S+  G GL +L++          ++     
Sbjct: 287 VCVNKTENYQSGHASAQEFWKLGLGQPFPCSAIEGVGLADLLDACFEHFPPDARRSSSRA 346

Query: 374 PSHKRHLYHLSQTVRYLEMASLN 396
              +R      +T    + A   
Sbjct: 347 SRAQRETERGEKTRDAPDYAEAA 369


>gi|169832185|ref|YP_001718167.1| GTP-binding protein Era [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169639029|gb|ACA60535.1| GTP-binding protein Era [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 308

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 78/194 (40%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + I+G  N GKS+L N+L  + VAI++D P TTR  +   L  +   V   DT 
Sbjct: 14  YRSGF-VTIIGRPNVGKSTLLNSLVGRKVAIISDKPQTTRHRIRAVLTRDDAQVVFVDTP 72

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPK----NIDFIFIGT 327
           GI +    + +  +      +++ DLIL L E + +     +    +          +  
Sbjct: 73  GIHKPKHRLGRMMVDTALKTLQDVDLILFLIEAHRESGPGDDFILERLAGIRTPVFLVIN 132

Query: 328 KSDLYS-------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL +                      +S+ TGE    L++ +   L    +  P    
Sbjct: 133 KIDLVAKPRLLPLIDEMRKKMAFREIIPLSARTGENTGLLVDLVIGCLPPGPRYYPEDAV 192

Query: 375 SHKRHLYHLSQTVR 388
           S +     L++ VR
Sbjct: 193 SDQAEEVILAELVR 206


>gi|122701403|emb|CAL88091.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I  +L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVL 166


>gi|88809126|ref|ZP_01124635.1| hypothetical protein WH7805_05521 [Synechococcus sp. WH 7805]
 gi|88787068|gb|EAR18226.1| hypothetical protein WH7805_05521 [Synechococcus sp. WH 7805]
          Length = 312

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 82/215 (38%), Gaps = 24/215 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L    VAI + +  TTR+ L   L      + + DT G
Sbjct: 11  RSGF-VALIGRPNVGKSTLVNQLVGDKVAITSPVAQTTRNRLRAILTTAEAQLILVDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
           I +   ++ +  ++     +   D +LLL E              +   + +    +  K
Sbjct: 70  IHKPHHLLGERLVQSARSAIGEVDQVLLLLEGCEPPGRGDAFIVNLLRQQRLPVQVVLNK 129

Query: 329 SDLYSTYTEE---------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            D   T                     H   + TGEG  EL+  + +++    +  P  +
Sbjct: 130 WDQVPTARRPEADAAYRDLLAESGWPIHHCCALTGEGCPELVRAVSALMPEGPQLYPADM 189

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            S +     +++ +R   +    E+      ++ +
Sbjct: 190 VSDQPERLLMAELIREQVLLLTREEVPHSVAVSID 224


>gi|242069257|ref|XP_002449905.1| hypothetical protein SORBIDRAFT_05g025430 [Sorghum bicolor]
 gi|241935748|gb|EES08893.1| hypothetical protein SORBIDRAFT_05g025430 [Sorghum bicolor]
          Length = 684

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 15/148 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +    +G   K+ DTAGIR  
Sbjct: 394 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTADGEKYKLIDTAGIRRR 453

Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIG 326
             ++      E   +KR F  +  +D++ L+ E  +          E    +    + + 
Sbjct: 454 AAVISAGSTTESLSVKRAFRAIRRSDVVALVIEAMACVTEQDYKIAERIEKEGKACVIVV 513

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEEL 354
            K D       E          E L  L
Sbjct: 514 NKWDTIPNKNHESTTHYEQDVREKLRIL 541



 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 39/170 (22%)

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKND--ISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           A  D ++    +     +V      +++   +S HI    L        K+ I+G  N G
Sbjct: 118 AAADLAKRLARELHIDDDVREKRRNIRDKTSVSKHIPDNLL-------PKVAIIGRPNVG 170

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-------------- 277
           KS+LFN L   + AIV D PG TRD L            + DT G+              
Sbjct: 171 KSALFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGDQEFMVIDTGGVITLSKSQAGVMEEL 230

Query: 278 ---------------RETDDIVEKEGI-KRTFLEVENADLILLLKEINSK 311
                          RE         I K+    V+ A +IL + +  ++
Sbjct: 231 AVTTTVGMDGIPLATREAAIARMPSMIEKQAVAAVDEASVILFVVDGQAE 280


>gi|122702135|emb|CAL88258.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
                Y            IS     G+  LI+ I + L
Sbjct: 129 EKERAYAFFSFGMPKSFNISVSHNRGISALIDAILNAL 166


>gi|292806498|gb|ADE42379.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILMAL 166


>gi|292806490|gb|ADE42375.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +     I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVNGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I  +L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVLN 167


>gi|84503431|ref|ZP_01001491.1| GTP-binding protein EngA [Oceanicola batsensis HTCC2597]
 gi|84388218|gb|EAQ01170.1| GTP-binding protein EngA [Oceanicola batsensis HTCC2597]
          Length = 494

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 18/157 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V + PG TRD+   D  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDNQPGVTRDLREGDARLGHLKFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ ++    K T   V  AD+ L + +             +I   ++   I    K++
Sbjct: 63  ATDESLQGRMRKLTERAVGMADVCLFVIDARVGVTPADHVFADILRKRSAHVILAANKAE 122

Query: 331 -------LYSTYTEEY--DHLISSFTGEGLEELINKI 358
                  L+  Y         +S+  GEG+ ELI  +
Sbjct: 123 GRAGEAGLFEAYELGLGEPLRLSAEHGEGMGELIEVL 159



 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 29/182 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N +  ++  +     G TRD +++ LD EG  V++ DTAG+R+
Sbjct: 208 LQVAVVGRPNAGKSTLINRILGEERLLTGPEAGITRDSISLRLDWEGLPVRLFDTAGMRK 267

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
                D +EK  +      V+ A+++++L +     E        ++  +    +    K
Sbjct: 268 RAKVQDKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVVVAVNK 327

Query: 329 SDLYSTYTEEYDHLISSF------------------TGEGLEELINKIKSILSNKFKKLP 370
            DL      +   L  SF                  TG GL+ L   I S      +++ 
Sbjct: 328 WDLEDDKQGKLRDLRESFERLLPQLRGAPLVTVSARTGRGLDRLRTAIVSAHETWNRRIS 387

Query: 371 FS 372
            +
Sbjct: 388 TA 389


>gi|122702745|emb|CAL88562.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE           +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAARMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNTLN 167


>gi|122702357|emb|CAL88369.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L+++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLRALN 167


>gi|18075571|emb|CAD11181.1| GTP-binding protein [Helicobacter pylori]
 gi|122702803|emb|CAL88591.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERACAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|331004162|ref|ZP_08327642.1| hypothetical protein HMPREF0491_02504 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411572|gb|EGG90982.1| hypothetical protein HMPREF0491_02504 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 403

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 10/160 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
               I + G  N GKSSL NA+  +++AIV++I GTT D +   ++ L    V + DT G
Sbjct: 16  ERATICLFGRCNVGKSSLINAITSQNIAIVSEIRGTTTDPVKKSMELLPFGPVVLVDTPG 75

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSD 330
           I +   + E   ++++   ++ ADLIL + +     SK+E+ F + I     I +G K D
Sbjct: 76  IDDESSLGELR-VQKSMEYIDQADLILFVVDGGSEISKEELEFIEKIKEKKHIIVGNKCD 134

Query: 331 LYSTYTEE--YDHLISSFTGEGLEELINKIKSILSNKFKK 368
                 +E   D  +S+     +++L   +  IL+   K+
Sbjct: 135 SIEDNKKECKADIYVSATQNINIDKLKALMAEILNKGKKE 174


>gi|292806454|gb|ADE42357.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFDISVSHNRGISALIDAILRAL 166


>gi|206891076|ref|YP_002248190.1| GTP-binding protein Era [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206743014|gb|ACI22071.1| GTP-binding protein Era [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 289

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  + V+IVT+ P TTR+ +T   +L    +   DT GI +  
Sbjct: 6   VALIGRPNVGKSTLINTVIGEKVSIVTEKPQTTRNRITGIKNLPNAQIIFIDTPGIHKPR 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--KEISFPK-----NIDFIFIGTKSD---- 330
             + +  +K     ++  DLI+ + E  +    E+S  +     N   I    K D    
Sbjct: 66  HKLGEFMVKEAQEAMDMVDLIVFMVEPEAPGNDELSIIERLKKLNKPVILAINKIDTVAK 125

Query: 331 -----LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                L   Y + +       IS+   +G+E L+ +I   L +     P  + + +   +
Sbjct: 126 QNLLPLIELYNDLHPFQEIIPISALKKDGIERLVERIIFYLPDSPILYPEDMLTDQAERF 185

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 186 MVAEFIR 192


>gi|328881436|emb|CCA54675.1| GTP-binding protein EngA [Streptomyces venezuelae ATCC 10712]
          Length = 482

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 23/227 (10%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D     D +     E+ ++  F   ++   I +   G +      + ++G  N GKS+L 
Sbjct: 6   DHGALGDAEYAEFMELASEEGFDVEEVEGAIEEAGHGPL----PVLAVVGRPNVGKSTLV 61

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N +  +  A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +
Sbjct: 62  NRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDVLGIDASVAAQAEYAI 121

Query: 297 ENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD----------LYSTYTEE 338
           E AD  L + +          +  ++        +    K D          L+S    E
Sbjct: 122 EAADACLFVVDATVGATDTDEAVVKLLRRAGKPVVLAANKVDGQSGEADAAMLWSLGLGE 181

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
               +SS  G G  +L++++   L    ++   +     R +  + +
Sbjct: 182 -PFPVSSLHGRGTGDLLDEVLRKLPEAPEQRFGNTVGGPRRIALIGR 227



 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            L +++   + +    + G  +    +I ++G  N GKSSL N +A +D  +V ++ GTT
Sbjct: 195 DLLDEVLRKLPEAPEQRFGNTVGGPRRIALIGRPNVGKSSLLNKVANEDRVVVNELAGTT 254

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKE---- 307
           RD +   ++L G   K  DTAGIR+   + E        RT   VE A++ ++L +    
Sbjct: 255 RDPVDELIELGGVTWKFVDTAGIRKKVHLQEGADYYASLRTAAAVEKAEVAVILIDTTDN 314

Query: 308 --INSKKEISFPKNIDFIFI--GTKSDLYSTYTE----------------EYDHLISSFT 347
             +  ++ I+         +    K D                            +S+ T
Sbjct: 315 ISVQDQRIITMAVESGRAIVIAYNKWDELDEERRYYLEREIETEMQQVAWAPRVNVSAKT 374

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
           G  +E+L+  I++ L+    ++P  
Sbjct: 375 GRHMEKLVPAIETALAGWETRVPTG 399


>gi|292806674|gb|ADE42467.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ +E         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSQEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|227504288|ref|ZP_03934337.1| GTP-binding protein EngA [Corynebacterium striatum ATCC 6940]
 gi|227199127|gb|EEI79175.1| GTP-binding protein EngA [Corynebacterium striatum ATCC 6940]
          Length = 541

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 71/176 (40%), Gaps = 17/176 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N    +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 106 VAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVAEWNGQRFFVQDTGGWDPNV 165

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKSDLYS 333
             +     ++  L +  AD+I+ + +     ++ +    +      +  I +  K D  +
Sbjct: 166 KGIHAAIARQAELAMNTADVIVFVVDTKVGITETDAVMARKLQKSEVPVILVSNKFDSET 225

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            Y +  +           +S+  G G  +++++I  +   + +    +    +  L
Sbjct: 226 MYADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRLFPEEPRHASITSGPRRVAL 281



 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 86/233 (36%), Gaps = 33/233 (14%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
               S +       + ++I     +      I +G + + ++G  N GKSSL N L  ++
Sbjct: 241 PWPVSAQHGRGGADVLDEILRLFPEEPRHASITSGPRRVALVGKPNVGKSSLLNKLTSEE 300

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENAD 300
            ++V +  GTT D +   + L+  L K  DTAG+R+        E     RT   ++ A+
Sbjct: 301 RSVVDNAAGTTVDPVDSLVQLDQRLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAE 360

Query: 301 LILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST-----YTEEYD------- 340
           + ++L + + +          +        +    K DL           E D       
Sbjct: 361 VCIMLIDASEEVSEQDQRVLNMVLEAGKALVIAFNKWDLMDEDRRYYLDREIDEQLRHLP 420

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                 IS+ TG  L+ L   +   L +  +++     ++      L + +  
Sbjct: 421 WVTRVNISAQTGRALQRLEPAMIEALESWDQRVSTGQLNNW-----LREAIAA 468


>gi|206971303|ref|ZP_03232254.1| GTP-binding protein Era [Bacillus cereus AH1134]
 gi|206734075|gb|EDZ51246.1| GTP-binding protein Era [Bacillus cereus AH1134]
          Length = 301

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 24/196 (12%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   D
Sbjct: 3   RKGYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPK----NIDFIFI 325
           T GI +    +    +K     ++  D++L +          +E    K          +
Sbjct: 63  TPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLV 122

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L   Y + ++      IS+  G  ++ LI  IK  L    +  P +
Sbjct: 123 INKIDQLHPEQLLELIDQYRKLHEFAEIVPISALDGNNVDALIGTIKKYLPEGPQYYPDN 182

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +++ +R
Sbjct: 183 QVTDHPERFIIAELIR 198


>gi|122702707|emb|CAL88543.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|122702211|emb|CAL88296.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFRINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGVPKSFNISVSHNRGISALIDAVLNALN 167


>gi|15827717|ref|NP_301980.1| GTP-binding protein EngA [Mycobacterium leprae TN]
 gi|221230194|ref|YP_002503610.1| GTP-binding protein EngA [Mycobacterium leprae Br4923]
 gi|13093268|emb|CAC31753.1| possible GTP-binding protein [Mycobacterium leprae]
 gi|219933301|emb|CAR71467.1| possible GTP-binding protein [Mycobacterium leprae Br4923]
          Length = 462

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 22/185 (11%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            +    L E    G  + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D    
Sbjct: 15  ELDDSDLAEF---GPVVAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDAMWT 71

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFP 317
           G    + DT G       +++   ++  + +  AD ++L+ ++         +   I   
Sbjct: 72  GRRFVVQDTGGWEPDAKGLKRLVAEQASVAMRTADAVILVVDVGVGATDADEAAARILLR 131

Query: 318 KNIDFIFIGTKSD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                     K D          L+S    E  H IS+  G G+ +L++K+ + L N  +
Sbjct: 132 SGKLVFLAANKVDGEKGESDASALWSLGLGE-PHAISAMHGRGVADLLDKVLAALPNVAE 190

Query: 368 KLPFS 372
                
Sbjct: 191 STSLD 195



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 85/213 (39%), Gaps = 28/213 (13%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
            +  S      +  L + + + +        +  G + + ++G  N GKSSL N LA   
Sbjct: 163 PHAISAMHGRGVADLLDKVLAALPNVAESTSLDGGLRRVALVGKPNVGKSSLLNKLAGDQ 222

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENAD 300
            ++V +  GTT D +   +++ G + +  DTAG+R         E     RT   +++A+
Sbjct: 223 RSVVHEAAGTTVDPVDSLIEMGGRVWRFVDTAGLRRKVGQASGHEFYASVRTHGAIDSAE 282

Query: 301 LILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST-----YTEEYD------- 340
           ++++L + +            +        +    K DL           E D       
Sbjct: 283 VVIMLIDASEPLTGQDQRVLSMVIDAGRALVLAFNKWDLVDEDRCDLLEREIDRELVQVR 342

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKL 369
                 IS+ TG  +++L+  +++ L++   ++
Sbjct: 343 WAQRVNISAKTGRAVQKLVPAMENSLASWDTRI 375


>gi|289578133|ref|YP_003476760.1| GTP-binding protein Era [Thermoanaerobacter italicus Ab9]
 gi|289527846|gb|ADD02198.1| GTP-binding protein Era [Thermoanaerobacter italicus Ab9]
          Length = 302

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKS+L NA+ ++ +AI +  P TTR+ +   L  + Y V   DT GI +  
Sbjct: 8   VALIGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDLYS 333
             + +  I+     ++  DLIL + E +++        I   K  +   I +  K DL  
Sbjct: 68  SKLSEFMIEVAKRTLKEVDLILYMIEPDTEIGPGDRYIIEHLKEVDTPVILVVNKIDLVP 127

Query: 334 T---------YTEEYDHLI----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     + +EY        S+   + ++ L  KI S+L    K       + +   
Sbjct: 128 EERIEETIKIFKKEYAFKDVVAISAIENKNIDLLKEKIVSLLPEGPKYYLEDYITDQPEK 187

Query: 381 YHLSQTVR 388
             +++ +R
Sbjct: 188 LIVAEIIR 195


>gi|122702227|emb|CAL88304.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +  S       K        N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPGDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLN 167


>gi|157826642|ref|YP_001495706.1| GTP-binding protein Era [Rickettsia bellii OSU 85-389]
 gi|189037663|sp|A8GUZ8|ERA_RICB8 RecName: Full=GTPase Era
 gi|157801946|gb|ABV78669.1| GTP-binding protein Era [Rickettsia bellii OSU 85-389]
          Length = 295

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 23/204 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           + I+    + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L    + + D
Sbjct: 3   KQIQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLNDTQIILYD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFI 325
           T GI E    +EK  ++  +  + +AD+++L+ +    ++S       K    N+  +F+
Sbjct: 63  TPGIFEPKGTLEKAMVRCAWSSLHSADIVMLIIDSLKPLDSITHDILNKLRSLNVVPVFL 122

Query: 326 GTKSDLYSTYTEEYD------------HLISSFTGEGLEELINKI---KSILSNKFKKLP 370
             K D+ S Y ++                IS+ +GE +++L+  I     I    +++  
Sbjct: 123 LNKIDVESKYIDDTKAFLAENYSDSLLFPISAISGENVDKLLEYITSKAKIAPWLYEEDD 182

Query: 371 FSIPSHKRHLYHLSQTVRYLEMAS 394
            +    +     +++   +L +  
Sbjct: 183 ITDLPMRFIAAEITREQLFLGLQQ 206


>gi|8134431|sp|Q49884|DER_MYCLE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|467147|gb|AAA50911.1| u0247e [Mycobacterium leprae]
          Length = 461

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 22/185 (11%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            +    L E    G  + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D    
Sbjct: 14  ELDDSDLAEF---GPVVAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDAMWT 70

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFP 317
           G    + DT G       +++   ++  + +  AD ++L+ ++         +   I   
Sbjct: 71  GRRFVVQDTGGWEPDAKGLKRLVAEQASVAMRTADAVILVVDVGVGATDADEAAARILLR 130

Query: 318 KNIDFIFIGTKSD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                     K D          L+S    E  H IS+  G G+ +L++K+ + L N  +
Sbjct: 131 SGKLVFLAANKVDGEKGESDASALWSLGLGE-PHAISAMHGRGVADLLDKVLAALPNVAE 189

Query: 368 KLPFS 372
                
Sbjct: 190 STSLD 194



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 85/213 (39%), Gaps = 28/213 (13%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
            +  S      +  L + + + +        +  G + + ++G  N GKSSL N LA   
Sbjct: 162 PHAISAMHGRGVADLLDKVLAALPNVAESTSLDGGLRRVALVGKPNVGKSSLLNKLAGDQ 221

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENAD 300
            ++V +  GTT D +   +++ G + +  DTAG+R         E     RT   +++A+
Sbjct: 222 RSVVHEAAGTTVDPVDSLIEMGGRVWRFVDTAGLRRKVGQASGHEFYASVRTHGAIDSAE 281

Query: 301 LILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST-----YTEEYD------- 340
           ++++L + +            +        +    K DL           E D       
Sbjct: 282 VVIMLIDASEPLTGQDQRVLSMVIDAGRALVLAFNKWDLVDEDRCDLLEREIDRELVQVR 341

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKL 369
                 IS+ TG  +++L+  +++ L++   ++
Sbjct: 342 WAQRVNISAKTGRAVQKLVPAMENSLASWDTRI 374


>gi|122702543|emb|CAL88461.1| GTPase [Helicobacter pylori]
 gi|122702749|emb|CAL88564.1| GTPase [Helicobacter pylori]
 gi|122702757|emb|CAL88568.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRALN 167


>gi|122700917|emb|CAL88047.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRALN 167


>gi|18075778|emb|CAD11317.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 347

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 39/222 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D  +
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKID--N 127

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
              +E  +  SSF                    K    S+  ++     +   +  L + 
Sbjct: 128 DKEKERAYAFSSF-----------------GIPKSFNISVSHNRGISALIDAILNTLNLN 170

Query: 394 SLNEKDCGLDIIAENLRLASVSLGK----------ITGCVDV 425
            + E+D   DI+ E+L   + +L +          I G V+V
Sbjct: 171 QIIEQDLDADIL-ESLETPNNALEETKEEEIIQVGIIGRVNV 211



 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 31/201 (15%)

Query: 149 GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHIS 208
             +  +S+L    ++ L ++   IE DLD    E ++  ++                 + 
Sbjct: 151 SHNRGISALIDAILNTL-NLNQIIEQDLDADILESLETPNNA----------------LE 193

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           + K  EII+ G    I+G  N GKSSL NAL KK+ ++V+ + GTT D +   + +    
Sbjct: 194 ETKEEEIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQK 249

Query: 269 VKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNID 321
           +   DTAGIR    I  +EK  ++RT   +E + + LL+ ++++      ++IS   +  
Sbjct: 250 ICFVDTAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKH 309

Query: 322 ---FIFIGTKSDLYSTYTEEY 339
               I I  K D+     EE 
Sbjct: 310 SLGIILILNKWDIRYAPYEEI 330


>gi|122702571|emb|CAL88475.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 ERERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700733|emb|CAL87955.1| GTPase [Helicobacter pylori]
 gi|122702349|emb|CAL88365.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGVPKSFNISVSHNRGISALIDAVLNALN 167


>gi|292806700|gb|ADE42480.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|119964121|ref|YP_947439.1| GTP-binding protein EngA [Arthrobacter aurescens TC1]
 gi|254783134|sp|A1R5C7|DER_ARTAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|119950980|gb|ABM09891.1| putative GTP-binding protein Era [Arthrobacter aurescens TC1]
          Length = 491

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD +       G    + DT G     
Sbjct: 56  LAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSARWNGRNFTLVDTGGWEHDA 115

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYS 333
             +     ++  + VE AD +L + +      +  E    +        I +  K D ++
Sbjct: 116 KGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEGVMKMLRKSKKPVIMVANKVDDFA 175

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSN 364
              +            + +S+  G G+ +L++ +   L  
Sbjct: 176 QEADSATLWGLGFGEPYPVSALHGRGVADLLDHVMDTLPE 215



 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N LA  +  +V  + GTTRD +   ++L     +  DTAGIR  
Sbjct: 230 RIALIGRPNVGKSSLLNKLAGSERVVVDPLAGTTRDPVDEFIELGDRTWRFVDTAGIRRR 289

Query: 281 DDIVE---KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             + +        RT   +E A++ ++L  ++           +++       +    K 
Sbjct: 290 QHMAQGADFYASLRTQAALEKAEVAVVLLAVDEVLSEQDVRILQLAIESGRALVLAFNKW 349

Query: 330 DLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL       Y                   IS+ TG   + L+  +   L +  +++P  
Sbjct: 350 DLLDDERRRYLEREIEQDLAHVEWAPRVNISAKTGWHKDRLVPALDIALESWDRRIPTG 408


>gi|4467663|emb|CAB37783.1| GTP-binding protein homologue [Helicobacter pylori]
 gi|4467673|emb|CAB37788.1| GTP-binding protein homologue [Helicobacter pylori]
 gi|122700741|emb|CAL87959.1| GTPase [Helicobacter pylori]
 gi|292806526|gb|ADE42393.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806604|gb|ADE42432.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSAL 166


>gi|122702621|emb|CAL88500.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKVAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122702205|emb|CAL88293.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKAINLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|157804058|ref|YP_001492607.1| GTP-binding protein EngA [Rickettsia canadensis str. McKiel]
 gi|166225851|sp|A8EZN9|DER_RICCK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157785321|gb|ABV73822.1| GTP-binding protein EngA [Rickettsia canadensis str. McKiel]
          Length = 447

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 15/159 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L+ +  AIV ++PG TRD    D  +      + DT G+ E  
Sbjct: 6   IALVGRPNVGKSTLFNRLSIRKKAIVHNLPGVTRDRKYTDGKIGSCEFLLIDTPGLEENP 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLYS 333
           + +    +++T   +  ADLI  + +       + K   SF +  N   I +  K +   
Sbjct: 66  NSMSVRLMEQTTKAILEADLICFMVDCRSGILPDDKLLSSFIRKYNKPAILVVNKCEKAF 125

Query: 334 TYTEEYDH-------LISSFTGEGLEELINKIKSILSNK 365
            + +EY          IS+  G GL +L ++I + L  +
Sbjct: 126 DFDKEYYQLGFDSMVAISAEHGTGLIDLYDEIIAKLPKE 164



 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 118/305 (38%), Gaps = 48/305 (15%)

Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169
           P   S R  E     +LEA+ +  ++   + +            LSS   ++      + 
Sbjct: 65  PNSMSVRLMEQTTKAILEADLICFMVDCRSGILPD------DKLLSSFIRKYNKPAILVV 118

Query: 170 SFIEADLDFSEEE-----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEI-IRNGYK-- 221
           +  E   DF +E      D     S E    ++ L ++I + + + K  E  I +  K  
Sbjct: 119 NKCEKAFDFDKEYYQLGFDSMVAISAEHGTGLIDLYDEIIAKLPKEKSIETNIADPVKGD 178

Query: 222 ---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
              IVI G  NAGKS+  NAL   +  +     G TR+ + ID   +   +K+ DTAG+R
Sbjct: 179 CVQIVISGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLR 238

Query: 279 ETDDIVE---KEGIKRTFLEVENADLILLLKEINSK---KEISFP-----KNIDFIFIGT 327
           +   I E   K         ++ A+ ++L+ +  S    ++++       +    + +  
Sbjct: 239 KKSTITESLDKLSASDAINSIKFANTVILIIDALSPLKQQDLNIASYVANEGRSIVIVVN 298

Query: 328 KSDLYSTYTEEYDH--------------------LISSFTGEGLEELINKIKSILSNKFK 367
           K DL     +E                        IS+   + +E++++   +I  N  K
Sbjct: 299 KWDLVKESEKEAFQEEFYYQINTHLPQIKGVSVLFISAINKQNIEQVLDACLTIYKNWNK 358

Query: 368 KLPFS 372
           K+  S
Sbjct: 359 KITTS 363


>gi|122702683|emb|CAL88531.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINSNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + ++L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNVL 166


>gi|219109543|ref|XP_002176526.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411061|gb|EEC50989.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 551

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 21/155 (13%)

Query: 197 LFLKNDISSHISQGKL--GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
             +   I   I++ K    E       I I+G  N GKSSL N++     AIV+++ GTT
Sbjct: 226 AEIMETIFDSIAEKKTFDAEDRPEEINIAIIGRPNVGKSSLLNSIFGDTRAIVSEMAGTT 285

Query: 255 RDVLTIDLDLEGYL--------VKISDTAGIRETDDI---VEKEGIKRTFLEVENADLIL 303
           RD +   ++              +  DTAGIR    +    E   + R    +  AD++L
Sbjct: 286 RDSIDAVMERPPPPGSDDLSTIYRFVDTAGIRRKGKVDFGPEFFMVNRALRAIRRADVVL 345

Query: 304 LLKEINS---KKEISFPKN-----IDFIFIGTKSD 330
           L+ +  S   +++    +         + +  K D
Sbjct: 346 LILDATSGVAEQDRVLAQKIADDGRACVIVCNKWD 380



 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 29/173 (16%)

Query: 214 EIIRNGYK---IVILGHSNAGKSSLFNALAKKDV--AIVTDIPGTTRDVLTIDLDLEGYL 268
             +R   K   I I+G  N GKS+L N +A      AIV D  G TRD      +  G  
Sbjct: 61  RRLRQNKKEPLIAIVGRPNVGKSALVNRIAGSQSGGAIVADESGITRDRTYRPAEFLGER 120

Query: 269 VKISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKEINS---------KKEISF 316
             I DT G+   DD   +  KE  ++  + +E +  ++++ +  +          + +  
Sbjct: 121 FMIVDTGGLVFDDDESTLFAKEIREQAMVAIEESAAVIMVVDGQTGLTGMDLMIAEFLRK 180

Query: 317 PKNIDFIFIGTK-----------SDLYSTYTEEYDHLISSFTGEGLEELINKI 358
             +I       K           +D +     E    +S+  G G  E++  I
Sbjct: 181 EVDIPVHVAVNKCESEKTGAMSAADFWGLGLGE-PFPVSALHGVGTAEIMETI 232


>gi|122702379|emb|CAL88380.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGVPKSFNISVSHNRGISALIDAVLDALN 167


>gi|122701391|emb|CAL88085.1| GTPase [Helicobacter pylori]
 gi|122701439|emb|CAL88109.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALN 167


>gi|122700777|emb|CAL87977.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI++D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAIISDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRALN 167


>gi|257068697|ref|YP_003154952.1| cytidylate kinase [Brachybacterium faecium DSM 4810]
 gi|256559515|gb|ACU85362.1| cytidylate kinase [Brachybacterium faecium DSM 4810]
          Length = 755

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 93/238 (39%), Gaps = 28/238 (11%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK- 221
           +K+   R  +EA   ++      +  S         L + + + + +   G    +G + 
Sbjct: 437 NKVDDQRGELEAAALWNLGLGEPHAVSALHGRGSGDLLDAVVAAMPEEGRGAAADHGPRR 496

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + ++G  N GKSSL N LA +   +V DI GTTRD +   + L G      DTAGIR   
Sbjct: 497 VALVGRPNVGKSSLLNRLAGEQRVVVDDIAGTTRDPVDEKISLGGKDWTFVDTAGIRRRV 556

Query: 281 --DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD 330
                 +     RT   ++ A++ ++L E +           ++        +    K D
Sbjct: 557 LQSQGADYYASLRTRAALDRAEVAVVLLEASEPLSTQDLKIIDMVLESGRALVLAFNKWD 616

Query: 331 LYS-------TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L          Y  E D            S+ TG   E+L+  I++ L +  +++P  
Sbjct: 617 LIDEERRRALEYEIERDLGHVAWAPRVNISAETGRHAEKLVPAIETALESWDRRIPTG 674



 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 17/173 (9%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           G    + RN   + ++G  N GKS+L N +  +  A+V D PG TRD +  + +  G   
Sbjct: 312 GPRAAVQRNLPVVAVVGRPNVGKSTLVNRILGRREAVVEDRPGVTRDRVFYEAEWTGKDF 371

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNID 321
            + DT G  +    +     ++  + V  AD++L + + N           ++    N+ 
Sbjct: 372 WLVDTGGWEDRVQGIAYRVAEQAEVAVSLADVVLFIVDANVGVTTTDEQLLKVLRKANVP 431

Query: 322 FIFIGTKSDLYSTYTEEY---------DHLISSFTGEGLEELINKIKSILSNK 365
            + +  K D      E            H +S+  G G  +L++ + + +  +
Sbjct: 432 IVLVANKVDDQRGELEAAALWNLGLGEPHAVSALHGRGSGDLLDAVVAAMPEE 484


>gi|268680372|ref|YP_003304803.1| ribosome-associated GTPase EngA [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618403|gb|ACZ12768.1| ribosome-associated GTPase EngA [Sulfurospirillum deleyianum DSM
           6946]
          Length = 477

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 21/191 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N GKSSL NAL  K  A+V+++ GTT D +   ++    ++   DTAG+R 
Sbjct: 208 INVAIIGRVNVGKSSLLNALVGKQRAVVSNVAGTTIDPVDESIEYNEKVINFVDTAGLRR 267

Query: 280 TDDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
              I  +EK  + RT   +E A++ LL+ + +            +    N+  I +  K 
Sbjct: 268 RGKIEGIEKFALMRTKEMLERANIALLVLDASEPFLELDERIAGLVEENNLACIIVLNKW 327

Query: 330 DL----YSTYTEEYDHLISSFTGEGL-------EELINKIKSILSNKFKKLPFSIPSHKR 378
           D     +   T E  H     +   L       ++ ++KIK ++ + ++     IP+ + 
Sbjct: 328 DEAMDDFEKVTAEVRHRFKFLSYAPLITVSAKSKQRVSKIKDMILSVYENYSQHIPTRQL 387

Query: 379 HLYHLSQTVRY 389
           +      T+R+
Sbjct: 388 NEVIREATIRH 398



 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 18/166 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSLFN +AK  +AI +D  GTTRD+ +  + +      I DT G+ ++
Sbjct: 3   KIAIIGLPNVGKSSLFNRIAKARIAITSDFSGTTRDIKSHQVYITEKPCLILDTGGLDKS 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE---INSKKEISF-----PKNIDFIFIGTKSD-- 330
            ++ E      +    + AD+IL++ +   + S++E          N     +  K D  
Sbjct: 63  TELFEN-VHDMSMQASKKADVILMVVDGKLLPSEEEKKIFYALQALNKPIALVINKIDND 121

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                   +S +  E+   +S     G+  L+  I S L      L
Sbjct: 122 KEMERAWEFSEFGAEHVFPLSVSHNRGVSALLEWIGSYLPAPEGAL 167


>gi|93004282|gb|ABE97061.1| YphC [Helicobacter pylori]
 gi|122701353|emb|CAL88066.1| GTPase [Helicobacter pylori]
 gi|122701445|emb|CAL88112.1| GTPase [Helicobacter pylori]
 gi|317452817|emb|CBL87844.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|317453541|emb|CBL87880.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRALN 167


>gi|122702595|emb|CAL88487.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122701357|emb|CAL88068.1| GTPase [Helicobacter pylori]
 gi|122701537|emb|CAL88158.1| GTPase [Helicobacter pylori]
 gi|292806600|gb|ADE42430.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700909|emb|CAL88043.1| GTPase [Helicobacter pylori]
 gi|122702283|emb|CAL88332.1| GTPase [Helicobacter pylori]
 gi|122702285|emb|CAL88333.1| GTPase [Helicobacter pylori]
 gi|122702299|emb|CAL88340.1| GTPase [Helicobacter pylori]
 gi|122702325|emb|CAL88353.1| GTPase [Helicobacter pylori]
 gi|122702765|emb|CAL88572.1| GTPase [Helicobacter pylori]
 gi|292806472|gb|ADE42366.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806578|gb|ADE42419.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806702|gb|ADE42481.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|242255904|gb|ACS88936.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGIGALIDAILSTL 166


>gi|242255914|gb|ACS88941.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINSNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGIGALIDAILSAL 166


>gi|122702755|emb|CAL88567.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKQKIVLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|167957385|ref|ZP_02544459.1| small GTP-binding protein [candidate division TM7 single-cell
           isolate TM7c]
 gi|169835713|ref|ZP_02868901.1| small GTP-binding protein [candidate division TM7 single-cell
           isolate TM7a]
          Length = 473

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 6/123 (4%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            K+     +  ++ ++G  N GKS+LFNALA K  A+V +I GTTRD+  + +      +
Sbjct: 166 AKIERQQNDILRVALIGRPNVGKSTLFNALAGKQQALVANIAGTTRDINRVQVRYNQNTI 225

Query: 270 KISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
           ++ DTAGIR   + +  +EK  + RT   +E +D+ LLL ++N   E++   +     I 
Sbjct: 226 ELLDTAGIRRQGKQETGIEKFSVLRTLQAIEESDICLLLLDVN---ELNVALDQRLAGII 282

Query: 327 TKS 329
             +
Sbjct: 283 NDT 285



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 16/169 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +N GKSSLFN + +   AIV    GTTRD +   ++ + +   + DTAG+++ +
Sbjct: 8   VALIGQANVGKSSLFNRMVRAQQAIVAREAGTTRDSVIGKVEYKKHQFWLVDTAGLKDPN 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI----NSKKEI----SFPKNIDFIFIGTKSDL-- 331
           D  E     +     E+AD+IL++ +     + + +I    +       I +  K+DL  
Sbjct: 68  DDFEATIQDQITEASESADVILVVVDSIMYPSDQDKIVAKKALKSKKPVILVLNKTDLKG 127

Query: 332 ------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                 +     +     S+    G+  L++ +   +  K ++    I 
Sbjct: 128 SLPVDEFKRLGIKTVIQTSAEHNRGIANLLDIVTEKMPAKIERQQNDIL 176


>gi|122702687|emb|CAL88533.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ +   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRAL 166


>gi|122702483|emb|CAL88432.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERACAFSSFGIPKSFNISVSHNRGISALIDAVLRALN 167


>gi|122702277|emb|CAL88329.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISVLIDAILHAL 166


>gi|122701433|emb|CAL88106.1| GTPase [Helicobacter pylori]
 gi|292806486|gb|ADE42373.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + + L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISTLIDAVLNAL 166


>gi|309775528|ref|ZP_07670528.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916622|gb|EFP62362.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 3_1_53]
          Length = 299

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ I I+G  NAGKS+L NA+ ++ VAI T  P TTR+ ++  L  E       DT 
Sbjct: 3   YKSGF-ISIIGRPNAGKSTLLNAILQEKVAITTPKPQTTRNNISGILTREDAQFVFVDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPK----NIDFIFIGT 327
           GI +    + +   +  +  +  AD+   + +         E    K    +I    I  
Sbjct: 62  GIHKPKHELGRTLNRNAYTAIAEADVNYWMVDATQPFGSGDEFILEKMKGAHIPVFLILN 121

Query: 328 KSDLYSTYT-------------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL                        +S+   E +E L+   K  L    K  P  + 
Sbjct: 122 KIDLLDKEAVLTTLTKWQSRMQFAEIFPVSALKRENVEHLLEVTKQYLQEGVKYFPDDMI 181

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           S     + +++ +R   +   NE+
Sbjct: 182 SDHGENFQIAEIIREKVLYKTNEE 205


>gi|257791363|ref|YP_003181969.1| GTP-binding proten HflX [Eggerthella lenta DSM 2243]
 gi|257475260|gb|ACV55580.1| GTP-binding proten HflX [Eggerthella lenta DSM 2243]
          Length = 436

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 113/295 (38%), Gaps = 24/295 (8%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           + + ++  R       +  L          L   R        F E E       + V  
Sbjct: 129 LHATSKEGRLQVRLAQNEYLLPRLRGMWAHLASNRMGGGVGSRFGEGESQLEVDRRMVRK 188

Query: 195 DILFLKNDISSH--ISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +K ++     +   +      +G +K+ + G++NAGKSSL N L   DV +  D  
Sbjct: 189 RITSIKRELKHLAEVRAVQRESRYESGMFKVALAGYTNAGKSSLLNRLTNADV-LAYDKL 247

Query: 252 GTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D  T   +L EG  + ++DT G  +       E  K T  E+  ADL+L + + +S
Sbjct: 248 FATLDSTTRKFELPEGREITVTDTVGFIQKLPTTLIEAFKSTLDEITGADLVLHVVDASS 307

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGL 351
            +                 +++  + +  K DL                  +S+ TGEG+
Sbjct: 308 DEYEAQIAAVEDVLGQIHAQDLSRVLVFNKCDLLGEERLGALKARHPQAQFVSAATGEGV 367

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
            EL+  +  + S + + L   IP ++  L  ++    ++   +  E+   + ++A
Sbjct: 368 GELVEHVARVASAQDEHLDVLIPYNRGDLVSVAHERCHILSETHEEQGTRIVMLA 422


>gi|182439534|ref|YP_001827253.1| GTP-binding protein EngA [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178468050|dbj|BAG22570.1| putative GTP-binding protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 489

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 86/227 (37%), Gaps = 23/227 (10%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +  E  D +     E+     F   ++   + +   G +      + ++G  N GKS+L 
Sbjct: 13  EHGELGDAEYAEFMELAAQEGFDPEEVEGALDEAGHGPL----PVLAVVGRPNVGKSTLV 68

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N +  +  A+V D PG TRD ++ + +  G   K+ DT G  +    ++     +    +
Sbjct: 69  NRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGGWEQDVLGLDASVAAQAEYAI 128

Query: 297 ENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD----------LYSTYTEE 338
           E AD ++ + +          +  ++        +    K D          L+S    E
Sbjct: 129 ETADAVVFVVDSTVGATDTDEAVVKLLRRAGKPVVLCANKVDGQSGEADATALWSLGLGE 188

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             + +SS  G G  ++++ +   L +   +   +     R +  + +
Sbjct: 189 -PYPVSSLHGRGTGDMLDAVLEALPDAPAQKFGTALGGPRRIALIGR 234



 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            + + +   +      K G  +    +I ++G  N GKSSL N +A +D  +V ++ GTT
Sbjct: 202 DMLDAVLEALPDAPAQKFGTALGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTT 261

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINSK 311
           RD +   ++L G   K  DTAGIR    + E        RT   VE A++ ++L + +  
Sbjct: 262 RDPVDELINLGGITWKFIDTAGIRRRVHLQEGADYYASLRTAAAVEKAEVAVVLIDSSES 321

Query: 312 KEI--------SFPKNIDFIFIGTKSD---------LYSTYTEEYDH-------LISSFT 347
             +        +       +    K D         L      E           +S+ T
Sbjct: 322 ISVQDQRIITMAVEAGRALVVAFNKWDTLDEERRYYLEREIETELAQISWAPRVNVSAVT 381

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
           G  +E+L+  I++ +     ++P  
Sbjct: 382 GRHMEKLVPAIETAIEGWETRVPTG 406


>gi|148259762|ref|YP_001233889.1| GTP-binding protein EngA [Acidiphilium cryptum JF-5]
 gi|146401443|gb|ABQ29970.1| tRNA modification GTPase trmE [Acidiphilium cryptum JF-5]
          Length = 451

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 18/170 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I G  N GKS+LFN LA K +A+V D PG TRD      +L G  V++ DTAG+ E 
Sbjct: 10  RVAICGRPNVGKSTLFNRLAGKRIALVADEPGVTRDRKEAWGELAGVKVQLIDTAGLEEA 69

Query: 281 -DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL 331
             D +       T   V+ ADL+L + +  +                    I +  K++ 
Sbjct: 70  PPDTLPGRMRASTGTAVDEADLVLFVFDARAGLLPEDRHFAAWLRRAGKPVIVVANKAEG 129

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   +            S+   EG+ +LI++I   L    +     
Sbjct: 130 RGGSNAALEAYELGLGEPVAVSAEHNEGVSDLIDRIIEALPETDEAEDED 179



 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 110/316 (34%), Gaps = 39/316 (12%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET----EMQRRLSMEGMSGE 153
           +L     L  A P     R   +    + EA+ +  +  +      E +   +    +G+
Sbjct: 59  QLIDTAGLEEAPPDTLPGRMRASTGTAVDEADLVLFVFDARAGLLPEDRHFAAWLRRAGK 118

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213
              +     +      + +EA   +          S E    +  L + I   + +    
Sbjct: 119 PVIVVANKAEGRGGSNAALEA---YELGLGEPVAVSAEHNEGVSDLIDRIIEALPETDEA 175

Query: 214 EII--RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVK 270
           E         + I+G  NAGKS+L N L  +   I    PG TRD +  +L D  G   +
Sbjct: 176 EDEDGERPMHLAIVGRPNAGKSTLMNRLLGEQRVITGPEPGLTRDAIAAELTDSAGRRYR 235

Query: 271 ISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKN 319
           + DTAG+R     +  +EK     T   ++ AD ++L  + +            +   + 
Sbjct: 236 LFDTAGLRRRARVEAGLEKLSTSSTIEALKFADTVVLAIDAHEGLHDQDFTIARLIEREG 295

Query: 320 IDFIFIGTKSDLYS-------TYTEEYDHLISSF-----------TGEGLEELINKIKSI 361
              +   TK DL            E  +H +S             TGEG+++L+  ++  
Sbjct: 296 RACVIALTKWDLVEDRDRTRRAILERLEHSLSQMKGITLVPLSGETGEGVKKLLPAVREA 355

Query: 362 LSNKFKKLPFSIPSHK 377
                 ++  S  +  
Sbjct: 356 DRIWNTRVTTSALNRW 371


>gi|240173132|ref|ZP_04751790.1| GTP-binding protein EngA [Mycobacterium kansasii ATCC 12478]
          Length = 466

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D+PG TRD ++ D    G    + DT G     
Sbjct: 32  VAIVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWSGRRFVVQDTGGWEPDA 91

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD--- 330
             +++   ++  + +  AD ++L+ +          +   I             K D   
Sbjct: 92  KGLQQLVAEQASVAMRTADAVILVVDAGVGATTADEAAARILLRSGKPVFLAANKVDNEK 151

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  L+S    E  H +S+  G G+ +L++++ + L    +     
Sbjct: 152 GEADAAALWSLGLGE-PHAVSAMHGRGVADLLDQVLAALPEVGESASAG 199



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 109/285 (38%), Gaps = 39/285 (13%)

Query: 119 ENGKIDLLEAESLADLISS------ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           E   + +  A+++  ++ +        E   R+ +    G+   L    +D   + +   
Sbjct: 100 EQASVAMRTADAVILVVDAGVGATTADEAAARILLRS--GKPVFLAANKVD---NEKGEA 154

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAG 231
           +A   +S      +  S      +  L + + + + +         G + + ++G  N G
Sbjct: 155 DAAALWSLGLGEPHAVSAMHGRGVADLLDQVLAALPEVGESASAGGGPRRVALVGKPNVG 214

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KSSL N LA    ++V ++ GTT D +   +++ G + +  DTAG+R         E   
Sbjct: 215 KSSLLNKLAGDQRSVVHEVAGTTVDPVDSLIEMGGKVWRFVDTAGLRRKVGQASGHEFYA 274

Query: 289 IKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY- 339
             RT   +++A++ ++L + +            +        +    K DL      E  
Sbjct: 275 SVRTHAAIDSAEVAIVLVDASQPLTEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRELL 334

Query: 340 ---------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
                             IS+ TG  +++L+  ++S L++   ++
Sbjct: 335 EREIDRELVQVRWAQRVNISAKTGRAVQKLVPALESALASWDTRI 379


>gi|317452833|emb|CBL87852.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  L++ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISVLVDAILNALN 167


>gi|257452783|ref|ZP_05618082.1| GTP-binding protein Era [Fusobacterium sp. 3_1_5R]
 gi|257466849|ref|ZP_05631160.1| GTP-binding protein Era [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917997|ref|ZP_07914237.1| GTP-binding protein era [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059324|ref|ZP_07923809.1| GTP-binding protein era [Fusobacterium sp. 3_1_5R]
 gi|313685000|gb|EFS21835.1| GTP-binding protein era [Fusobacterium sp. 3_1_5R]
 gi|313691872|gb|EFS28707.1| GTP-binding protein era [Fusobacterium gonidiaformans ATCC 25563]
          Length = 296

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +G      DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLMNKLVSEKVAIVSDKAGTTRDNIKGILNFQGKQYIFIDTPGIHKPK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
            ++ +   +     +++AD IL L +   +         E         + +  K D  S
Sbjct: 66  HLLGEYMTEIAIRSLKDADAILFLLDGTQEISTGDFFVWEKIQSSKKPVVVLVNKIDKIS 125

Query: 334 TYTEEY--------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
               E                   S     GL  L++ ++  L    +  P  + +    
Sbjct: 126 DEEIEEKKLEIQEKLGEGFKIVFASGMYSFGLPRLLDALEEYLEEGIQYYPEDMYTDMSI 185

Query: 380 LYHLSQTVR 388
              +++ VR
Sbjct: 186 YRMITEIVR 194


>gi|89100470|ref|ZP_01173332.1| Era [Bacillus sp. NRRL B-14911]
 gi|89084813|gb|EAR63952.1| Era [Bacillus sp. NRRL B-14911]
          Length = 309

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 78/201 (38%), Gaps = 22/201 (10%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
                +  ++G+ I I+G  N GKS+  N +  + +AI++D P TTR+ +   L      
Sbjct: 6   NSNREQTHKSGF-ISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNDAQ 64

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISFPK----NI 320
               DT GI +    +    +K     ++  DLIL +          +E    K      
Sbjct: 65  FIFIDTPGIHKPKHKLGDFMMKIAQNTLKEVDLILFMVNAEEGFGRGEEFIIEKFQNVKT 124

Query: 321 DFIFIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFK 367
               +  K D         +  +Y E+Y       IS+  G  ++ L+ +IK  +    +
Sbjct: 125 PIFLVINKIDQIHPDKLFSIIESYKEKYGFKEIIPISALEGNNVDTLLEQIKQYIPEGPQ 184

Query: 368 KLPFSIPSHKRHLYHLSQTVR 388
             P    +     + +S+ +R
Sbjct: 185 FYPADQVTDHPERFIVSELIR 205


>gi|122702689|emb|CAL88534.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSAL 166


>gi|122701567|emb|CAL88173.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +     I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVNGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|242255876|gb|ACS88922.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I + +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGINALIDAILSTLN 167


>gi|122702537|emb|CAL88458.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|99905875|gb|ABF68632.1| YphC [Helicobacter pylori]
 gi|122701423|emb|CAL88101.1| GTPase [Helicobacter pylori]
 gi|122701475|emb|CAL88127.1| GTPase [Helicobacter pylori]
 gi|122702479|emb|CAL88430.1| GTPase [Helicobacter pylori]
 gi|122702505|emb|CAL88443.1| GTPase [Helicobacter pylori]
 gi|122702697|emb|CAL88538.1| GTPase [Helicobacter pylori]
 gi|122702753|emb|CAL88566.1| GTPase [Helicobacter pylori]
 gi|292806470|gb|ADE42365.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806532|gb|ADE42396.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806612|gb|ADE42436.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806652|gb|ADE42456.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806678|gb|ADE42469.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|317453519|emb|CBL87869.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|212696217|ref|ZP_03304345.1| hypothetical protein ANHYDRO_00753 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676846|gb|EEB36453.1| hypothetical protein ANHYDRO_00753 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 442

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 4/195 (2%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   I   K    + +  +I I+G  NAGKSSL N L  ++  IVTDI GTTRD 
Sbjct: 159 DLLDKVVESIDFSKFDTDL-DATRIAIIGKPNAGKSSLVNHLLNEERMIVTDIAGTTRDA 217

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           +      +     + DTAG+R      D +E    +RTF  V+++++ L L +       
Sbjct: 218 IDTYWQYKDNNYVLIDTAGLRRKNKVSDNIEYYANQRTFDAVDSSEICLFLIDATVGVTE 277

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              K   +     K+ + +    +     ++       E+ NK+   L      +     
Sbjct: 278 QDTKIAGYAHNKRKAIIIAVNKWDKVEKETNTMRNMEREIRNKLSFALYAPIIFISVLKS 337

Query: 375 SHKRHLYHLSQTVRY 389
                L +L + V  
Sbjct: 338 QRIIDLLNLIEIVNS 352



 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 15/156 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G +N GKS+LFN L  K  AI  D  G TRD +   ++  G    ++DT G+    
Sbjct: 10  VTLVGRTNVGKSTLFNKLVGKRKAITEDENGVTRDRVYDKVEWTGKEFILADTGGLDISN 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSDLY 332
            +I+ +E   +    +  +DLIL + +          EIS      N   I +  K D  
Sbjct: 70  KEIMNQEIKSQVEKALLESDLILFVVDGREGINPHDFEISNELRKYNKKVIVVANKIDRE 129

Query: 333 STYTEEYDHLI------SSFTGEGLEELINKIKSIL 362
           +     YD          + + EG + L + +  ++
Sbjct: 130 TIPDHIYDFYQFGFDDLVTISAEGSKNLGDLLDKVV 165


>gi|122701607|emb|CAL88193.1| GTPase [Helicobacter pylori]
 gi|122702199|emb|CAL88290.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILGAL 166


>gi|325831411|ref|ZP_08164665.1| GTP-binding protein HflX [Eggerthella sp. HGA1]
 gi|325486665|gb|EGC89113.1| GTP-binding protein HflX [Eggerthella sp. HGA1]
          Length = 436

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 113/295 (38%), Gaps = 24/295 (8%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           + + ++  R       +  L          L   R        F E E       + V  
Sbjct: 129 LHATSKEGRLQVRLAQNEYLLPRLRGMWAHLASNRMGGGVGSRFGEGESQLEVDRRMVRK 188

Query: 195 DILFLKNDISSH--ISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +K ++     +   +      +G +K+ + G++NAGKSSL N L   DV +  D  
Sbjct: 189 RITSIKRELKHLAEVRAVQRESRYESGMFKVALAGYTNAGKSSLLNRLTNADV-LAYDKL 247

Query: 252 GTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D  T   +L EG  + ++DT G  +       E  K T  E+  ADL+L + + +S
Sbjct: 248 FATLDSTTRKFELPEGREITVTDTVGFIQKLPTTLIEAFKSTLDEITGADLVLHVVDASS 307

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGL 351
            +                 +++  + +  K DL                  +S+ TGEG+
Sbjct: 308 DEYEAQIAAVEDVLGQIHAQDLSRVLVFNKCDLLGEERLGALKARHPQAQFVSAATGEGV 367

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
            EL+  +  + S + + L   IP ++  L  ++    ++   +  E+   + ++A
Sbjct: 368 GELVEHVARVASAQDEHLDVLIPYNRGDLVSVAHERCHILSETHEEQGTRIVMLA 422


>gi|292806438|gb|ADE42349.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + S L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSTLN 167


>gi|292806424|gb|ADE42342.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMVK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSAL 166


>gi|292806414|gb|ADE42337.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806504|gb|ADE42382.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLRALN 167


>gi|122702341|emb|CAL88361.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLRLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGVPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122701649|emb|CAL88214.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + + L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNAL 166


>gi|99905857|gb|ABF68623.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI ++  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|4467667|emb|CAB37785.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKSLNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGAPKSLNISVSHNRGISALIDAVLNALN 167


>gi|122702669|emb|CAL88524.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS      +  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRSISTLIDAILSALN 167


>gi|20807454|ref|NP_622625.1| GTPase [Thermoanaerobacter tengcongensis MB4]
 gi|25008432|sp|Q8RB50|ERA_THETN RecName: Full=GTPase Era
 gi|20515979|gb|AAM24229.1| GTPases [Thermoanaerobacter tengcongensis MB4]
          Length = 298

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 22/205 (10%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
             R G+ + ++G +N GKS+L NA+ K+ VAI +  P TTR+ +   L  E Y +   DT
Sbjct: 2   AYRAGF-VALIGRTNVGKSTLLNAILKEKVAITSPKPQTTRNTIRGILTTEDYQIIFVDT 60

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
            GI +    + +  I+     +++ DLIL + E ++          +     +   I + 
Sbjct: 61  PGIHKPKSKLSEFMIEVAKRTLKDVDLILYMVEPDTSIGPGDRYILDNLKEVDTPVILVV 120

Query: 327 TKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K DL              S Y  +    IS+  G  +E L  KI S L    +      
Sbjct: 121 NKIDLVPAERVEEAIKVFKSEYNFKDVVAISASLGTNVEVLKEKIVSFLPEGPRYYLDDY 180

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            + +     +++ +R   +  L E+
Sbjct: 181 ITDQPEKLIVAEIIREKMLYFLEEE 205


>gi|302561447|ref|ZP_07313789.1| ribosome-associated GTPase EngA [Streptomyces griseoflavus Tu4000]
 gi|302479065|gb|EFL42158.1| ribosome-associated GTPase EngA [Streptomyces griseoflavus Tu4000]
          Length = 496

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 21/220 (9%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D +     E+  +  F   D+   I     G +      + ++G  N GKS+L N +  +
Sbjct: 26  DAEFAEFMELAAEEGFDLEDVEGAIEAAGHGPL----PVLAVVGRPNVGKSTLVNRIIGR 81

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +E AD +
Sbjct: 82  REAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDVLGIDASVAAQAEYAIEAADAV 141

Query: 303 LLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY---------DHLISS 345
           + + +          +   +        +    K D  S   +            + +S+
Sbjct: 142 VFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGPSGEADAAYLWSLGLGEPYPVSA 201

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             G G  ++++++   L     +   S     R +  + +
Sbjct: 202 LHGRGTGDMLDQVLEALPEAPAQTFGSAVGGPRRVALIGR 241



 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 80/209 (38%), Gaps = 38/209 (18%)

Query: 198 FLKNDISSHISQGKL---GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            + + +   + +      G  +    ++ ++G  N GKSSL N +A ++  +V ++ GTT
Sbjct: 209 DMLDQVLEALPEAPAQTFGSAVGGPRRVALIGRPNVGKSSLLNKVAGEERVVVNELAGTT 268

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE-------------VENADL 301
           RD +   ++L G   K  DTAGIR+   + +      +                ++ AD 
Sbjct: 269 RDPVDEMIELGGKTWKFVDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVVLIDAADS 328

Query: 302 ILLLKEINSKKEISFPKNIDFIFIG--TKSD---------LYSTYTEEYDH-------LI 343
           I     +  ++ ++         +    K D         L      E           +
Sbjct: 329 I----SVQDQRIVTMAVEAGRALVLAYNKWDTLDEERRYYLEREIETELGQVAWAPRVNV 384

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           S+ TG  +E+L+  I++ L     ++P  
Sbjct: 385 SARTGRHMEKLVPAIEAALEGWETRVPTG 413


>gi|242255890|gb|ACS88929.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I ++L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNVL 166


>gi|169350534|ref|ZP_02867472.1| hypothetical protein CLOSPI_01302 [Clostridium spiroforme DSM 1552]
 gi|169292854|gb|EDS74987.1| hypothetical protein CLOSPI_01302 [Clostridium spiroforme DSM 1552]
          Length = 396

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 16/169 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  N+GKSSL NA   ++V+IV+++ GTT D +   ++++G     + DTAG
Sbjct: 11  NRIHIGFFGKRNSGKSSLINAFVNQEVSIVSNVAGTTTDPVYKAMEIQGIGPCVLIDTAG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSDL 331
             +  D+      ++T    E  DL +++   +  +E+++      K+I  I +  K DL
Sbjct: 71  FDDVGDLGNLR-NRKTKKTSEKIDLAIIIFSDDISEELAWYQYFKNKHITIIPVINKIDL 129

Query: 332 ---------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                         +    L+S+ T +G+ EL NKI   + N ++K   
Sbjct: 130 EIEEEIINNVEKNIQCKPILVSTKTKQGITELKNKIIQNIPNDYEKESI 178


>gi|18075567|emb|CAD11179.1| GTP-binding protein [Helicobacter pylori]
 gi|18075569|emb|CAD11180.1| GTP-binding protein [Helicobacter pylori]
 gi|122702793|emb|CAL88586.1| GTPase [Helicobacter pylori]
 gi|122702813|emb|CAL88596.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSL N LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLLNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|30022378|ref|NP_834009.1| GTP-binding protein Era [Bacillus cereus ATCC 14579]
 gi|218232187|ref|YP_002369107.1| GTP-binding protein Era [Bacillus cereus B4264]
 gi|29897936|gb|AAP11210.1| GTP-binding protein [Bacillus cereus ATCC 14579]
 gi|218160144|gb|ACK60136.1| GTP-binding protein Era [Bacillus cereus B4264]
 gi|326942082|gb|AEA17978.1| GTP-binding protein Era [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 301

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 24/196 (12%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   D
Sbjct: 3   RKGYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPK----NIDFIFI 325
           T GI +    +    +K     ++  D++L +          +E    K          +
Sbjct: 63  TPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLV 122

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L   Y + ++      IS+  G  ++ LI  IK  L    +  P +
Sbjct: 123 INKIDQLHPEQLLELIDQYRKLHEFAEIVPISALDGNNVDALIGTIKKYLPEGPQYYPEN 182

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +++ +R
Sbjct: 183 QVTDHPERFIIAELIR 198


>gi|122702373|emb|CAL88377.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGIGALIDAVLNALN 167


>gi|122702185|emb|CAL88283.1| GTPase [Helicobacter pylori]
 gi|122702721|emb|CAL88550.1| GTPase [Helicobacter pylori]
 gi|292806450|gb|ADE42355.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806462|gb|ADE42361.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806468|gb|ADE42364.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|292806616|gb|ADE42438.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122701351|emb|CAL88065.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNTLN 167


>gi|122702175|emb|CAL88278.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDSDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|18075579|emb|CAD11185.1| GTP-binding protein [Helicobacter pylori]
 gi|122702797|emb|CAL88588.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|30264370|ref|NP_846747.1| GTP-binding protein Era [Bacillus anthracis str. Ames]
 gi|47529821|ref|YP_021170.1| GTP-binding protein Era [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187195|ref|YP_030447.1| GTP-binding protein Era [Bacillus anthracis str. Sterne]
 gi|65321672|ref|ZP_00394631.1| COG1159: GTPase [Bacillus anthracis str. A2012]
 gi|165872076|ref|ZP_02216716.1| GTP-binding protein Era [Bacillus anthracis str. A0488]
 gi|167634499|ref|ZP_02392819.1| GTP-binding protein Era [Bacillus anthracis str. A0442]
 gi|167638699|ref|ZP_02396975.1| GTP-binding protein Era [Bacillus anthracis str. A0193]
 gi|170687400|ref|ZP_02878617.1| GTP-binding protein Era [Bacillus anthracis str. A0465]
 gi|170707479|ref|ZP_02897933.1| GTP-binding protein Era [Bacillus anthracis str. A0389]
 gi|177653279|ref|ZP_02935531.1| GTP-binding protein Era [Bacillus anthracis str. A0174]
 gi|190566974|ref|ZP_03019890.1| GTP-binding protein Era [Bacillus anthracis Tsiankovskii-I]
 gi|227817076|ref|YP_002817085.1| GTP-binding protein Era [Bacillus anthracis str. CDC 684]
 gi|229602326|ref|YP_002868589.1| GTP-binding protein Era [Bacillus anthracis str. A0248]
 gi|254684057|ref|ZP_05147917.1| GTP-binding protein Era [Bacillus anthracis str. CNEVA-9066]
 gi|254736405|ref|ZP_05194111.1| GTP-binding protein Era [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741443|ref|ZP_05199130.1| GTP-binding protein Era [Bacillus anthracis str. Kruger B]
 gi|254750881|ref|ZP_05202920.1| GTP-binding protein Era [Bacillus anthracis str. Vollum]
 gi|254757791|ref|ZP_05209818.1| GTP-binding protein Era [Bacillus anthracis str. Australia 94]
 gi|30259028|gb|AAP28233.1| GTP-binding protein Era [Bacillus anthracis str. Ames]
 gi|47504969|gb|AAT33645.1| GTP-binding protein Era [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181122|gb|AAT56498.1| GTP-binding protein Era [Bacillus anthracis str. Sterne]
 gi|164712207|gb|EDR17744.1| GTP-binding protein Era [Bacillus anthracis str. A0488]
 gi|167513547|gb|EDR88917.1| GTP-binding protein Era [Bacillus anthracis str. A0193]
 gi|167529951|gb|EDR92686.1| GTP-binding protein Era [Bacillus anthracis str. A0442]
 gi|170127723|gb|EDS96596.1| GTP-binding protein Era [Bacillus anthracis str. A0389]
 gi|170668595|gb|EDT19341.1| GTP-binding protein Era [Bacillus anthracis str. A0465]
 gi|172081561|gb|EDT66633.1| GTP-binding protein Era [Bacillus anthracis str. A0174]
 gi|190561965|gb|EDV15934.1| GTP-binding protein Era [Bacillus anthracis Tsiankovskii-I]
 gi|227004139|gb|ACP13882.1| GTP-binding protein Era [Bacillus anthracis str. CDC 684]
 gi|229266734|gb|ACQ48371.1| GTP-binding protein Era [Bacillus anthracis str. A0248]
          Length = 301

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 24/196 (12%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   D
Sbjct: 3   RKGYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPK----NIDFIFI 325
           T GI +    +    +K     ++  D++L +          +E    K          +
Sbjct: 63  TPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLV 122

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L   Y + +D      IS+  G   E LI  IK  L    +  P +
Sbjct: 123 INKIDQVHPEQLLELIDQYRKLHDFAEIVPISALDGNNAEALIGTIKKYLPEGPQYYPDN 182

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +++ +R
Sbjct: 183 QVTDHPERFIIAELIR 198


>gi|317452837|emb|CBL87854.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMVK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|292806588|gb|ADE42424.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLDALN 167


>gi|229494892|ref|ZP_04388645.1| ribosome-associated GTPase EngA [Rhodococcus erythropolis SK121]
 gi|229318250|gb|EEN84118.1| ribosome-associated GTPase EngA [Rhodococcus erythropolis SK121]
          Length = 475

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 106/274 (38%), Gaps = 29/274 (10%)

Query: 128 AESLADLISSETEMQR-RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186
           A+++  ++ +         ++  +     +      +K+   R+  E    +S       
Sbjct: 118 ADAILLVVDAVVGATATDEAVARVLRRSKTPVILVANKVDDGRTESEVAALWSLGLGQPY 177

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVA 245
             S         L +++   + +     I   G + + ++G  N GKSSL N L+  + +
Sbjct: 178 SVSATHGRGTGDLLDEVLEKLPETPREGIPGGGPRRVALVGKPNVGKSSLLNKLSGDERS 237

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLI 302
           +V ++ GTT D +   ++L G   +  DTAG+R+        E     RT   +E A++ 
Sbjct: 238 VVHNVAGTTVDPVDSIVELGGRPWRFVDTAGLRKRVSHASGAEFYASLRTKSAIEAAEVA 297

Query: 303 LLLKEINSK------KEISFPKNIDFIFIG--TKSDLYST-----YTEEYD--------- 340
           +LL + +        + +S   +     +    K DL          +E D         
Sbjct: 298 ILLIDAHEPITEQDLRVLSMVADTGRALVIAFNKWDLVDEDRRLMLDKEVDRDLVRVPWA 357

Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               IS+ TG  + +L+  + + L +  K++P  
Sbjct: 358 QRVNISAHTGRAVAKLVPALDTALESWDKRIPTG 391



 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 17/180 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +     GE       + ++G  N GKS+L N +  +  A+V DIPG TRD ++ + +  G
Sbjct: 26  LEADGEGEAHIAVPTLAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWAG 85

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPK 318
               + DT G       +++   ++  L +  AD ILL+ +          +   +    
Sbjct: 86  RRFLVQDTGGWEPDAKGLQQAVARQAELAMGTADAILLVVDAVVGATATDEAVARVLRRS 145

Query: 319 NIDFIFIGTKSDLYSTYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
               I +  K D   T +E            + +S+  G G  +L++++   L    ++ 
Sbjct: 146 KTPVILVANKVDDGRTESEVAALWSLGLGQPYSVSATHGRGTGDLLDEVLEKLPETPREG 205


>gi|115605755|gb|ABJ15859.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERAYAFSSFGMPKRFNISVSHNRGISALIDAVLSAL 166


>gi|122701599|emb|CAL88189.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAMLNALN 167


>gi|317452825|emb|CBL87848.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ +++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHELELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKATQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + S L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLSALN 167


>gi|253682642|ref|ZP_04863439.1| GTP-binding protein Era [Clostridium botulinum D str. 1873]
 gi|253562354|gb|EES91806.1| GTP-binding protein Era [Clostridium botulinum D str. 1873]
          Length = 294

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 86/209 (41%), Gaps = 24/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +  + ++IV+  P TTR+ +   L  + Y +   DT GI +  
Sbjct: 7   ISIIGRPNVGKSTLINEILGEKLSIVSCRPQTTRNNIRAILTKDDYQLVFLDTPGIHKPR 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLK----EINSKKEISFPK----NIDFIFIGTKSD--- 330
             + +  +K      +  DLI+ +     EI    E+              I  K D   
Sbjct: 67  HKLGEYMVKAAESSKDEVDLIVFITTPQNEIGKGDELILENIKNSKKPVFLIVNKIDENP 126

Query: 331 --LYSTYTEEYDHLI--------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
             L +   ++Y   +        S+   + ++ L++ +   +    K  P  + +  +  
Sbjct: 127 PELVAETLKKYSEYMEFKEIIPISAQKNKNVDILLDLMIKYMPEGPKYYPDDMITDVQER 186

Query: 381 YHLSQTVRYLEMASLNE---KDCGLDIIA 406
           + +S+ +R   +  L+E       ++II+
Sbjct: 187 FVVSEIIREKALKLLSEEVPHGIAVEIIS 215


>gi|122702461|emb|CAL88421.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  L++ +   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISTLVDAVLDTLN 167


>gi|122702507|emb|CAL88444.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKSLNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122701341|emb|CAL88060.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + + L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNAL 166


>gi|122701349|emb|CAL88064.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKVAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|296504794|ref|YP_003666494.1| GTP-binding protein Era [Bacillus thuringiensis BMB171]
 gi|296325846|gb|ADH08774.1| GTP-binding protein Era [Bacillus thuringiensis BMB171]
          Length = 301

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 24/196 (12%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   D
Sbjct: 3   RKGYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPK----NIDFIFI 325
           T GI +    +    +K     ++  D++L +          +E    K          +
Sbjct: 63  TPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLV 122

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L   Y + ++      IS+  G  ++ LI  IK+ L    +  P +
Sbjct: 123 INKIDQLHPEQLLELIDQYRKLHEFAEIVPISALDGNNVDALIGTIKNYLPEGPQYYPEN 182

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +++ +R
Sbjct: 183 QVTDHPERFIIAELIR 198


>gi|115605759|gb|ABJ15861.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERACAFSSFGMPKSFNISVSHNRGISALIDAVLSAL 166


>gi|304316658|ref|YP_003851803.1| GTP-binding protein Era [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778160|gb|ADL68719.1| GTP-binding protein Era [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 299

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 21/187 (11%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G +N GKS+L NAL ++ VAI +D P TTR+ +   L  E Y V   DT GI +   
Sbjct: 9   ALIGRTNVGKSTLLNALLEEKVAITSDKPQTTRNTIQGILTGEDYQVVFIDTPGIHKPKH 68

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD---- 330
            + +  I+     +   DLI+ + E +++         E     +   I +  K D    
Sbjct: 69  KLSEIMIESVKKTLTEVDLIIYMVEPDAEVGPGDEYIIEHLISIDTPVILVINKIDTVPH 128

Query: 331 ---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                      + Y  +    IS+   + ++ L + I   +    +  P    + +   +
Sbjct: 129 ETVDKTIENFKAQYNFKDILPISALKNKNIDLLKHTIVLYMPEGPQYFPSDYITDRPEKF 188

Query: 382 HLSQTVR 388
            +S+ +R
Sbjct: 189 LVSEIIR 195


>gi|122701335|emb|CAL88057.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL +     I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVNGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILRALN 167


>gi|317453525|emb|CBL87872.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLRALN 167


>gi|270291317|ref|ZP_06197539.1| GTP-binding protein Era [Pediococcus acidilactici 7_4]
 gi|304385067|ref|ZP_07367413.1| GTP-binding protein Era [Pediococcus acidilactici DSM 20284]
 gi|270280163|gb|EFA25999.1| GTP-binding protein Era [Pediococcus acidilactici 7_4]
 gi|304329261|gb|EFL96481.1| GTP-binding protein Era [Pediococcus acidilactici DSM 20284]
          Length = 304

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 79/200 (39%), Gaps = 23/200 (11%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  +   +G+ + I+G  N GKS+  N +  + VAI++D+P TTR+ +      +   + 
Sbjct: 3   ENKQAFHSGF-VAIVGRPNVGKSTFLNYVVGQKVAIMSDVPQTTRNKIQGIYTTDREQIV 61

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNID 321
             DT GI +  + +    ++     +   D ++ +   + K+          +   KN  
Sbjct: 62  FIDTPGIHKAHNKLGDFMVQSAISSLNEVDAVMFMVNADQKRGAGDNYIIERLKKIKNRP 121

Query: 322 FIFIGTKSDL---------YSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKK 368
              +  K DL           +Y +  D      IS+  G  + EL+  +   +    + 
Sbjct: 122 IYLVINKIDLVHPDELLPIVDSYRDALDWTEVFPISALQGNNINELLATLSKQMPEGPQY 181

Query: 369 LPFSIPSHKRHLYHLSQTVR 388
            P    +     + +S+ +R
Sbjct: 182 YPSDQVTDHPERFVVSELIR 201


>gi|254460403|ref|ZP_05073819.1| GTP-binding protein [Rhodobacterales bacterium HTCC2083]
 gi|206676992|gb|EDZ41479.1| GTP-binding protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 490

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 30/204 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   D  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGDARLADLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK-- 328
            TD+ ++    + T   V+ AD+ L + +  +          EI   ++   I    K  
Sbjct: 63  ATDESLQGRMRRLTERAVDMADICLFMIDARAGVTPADQVFAEILRKRSAHVILAANKGE 122

Query: 329 --------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    + YS    E    +S+  GEGL +L  ++          +P +    +R L
Sbjct: 123 GSAADAGVIEAYSLGLGE-PIRLSAEHGEGLNDLYTQL----------MPLADGFAERAL 171

Query: 381 YHLSQTVRYLEMASLNEKDCGLDI 404
               +T   L+     +++   ++
Sbjct: 172 DQAPETDVALDEDDEWDENRPFEM 195



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 29/190 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +   +I ++G  NAGKS+L N +  +D  +     G TRD +++  +  G  ++I DTAG
Sbjct: 199 KKPMQIAVVGRPNAGKSTLINMIMGEDRLLTGPEAGITRDAISLRSEWNGTHIRIFDTAG 258

Query: 277 IRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFI 325
           +R+     D +EK  +      V+ A+++++L +     E        ++  +    I  
Sbjct: 259 MRKKAKVQDKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVIVA 318

Query: 326 GTKSD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
             K D                  L           +S+ TG GL+ L + I S       
Sbjct: 319 VNKWDIEDDKQNKLRDLRESFERLLPQLRGAPLVTVSAKTGRGLDRLHDAILSAYKTWNT 378

Query: 368 KLPFSIPSHK 377
           ++P +  +  
Sbjct: 379 RVPTAALNRW 388


>gi|122701591|emb|CAL88185.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + ++LIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSNLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|292806500|gb|ADE42380.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLRALN 167


>gi|239948355|ref|ZP_04700108.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922631|gb|EER22655.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 567

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 24/236 (10%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEII-RNGYKIVILGHSNAGKSSLFNALAK 241
           D +  +    L          S    + K G++  +    + I+G  N+GKS+L N +  
Sbjct: 243 DTECSTVAYTLVREDASTGSTSKLPLEAKFGKMSNQKTVSVCIIGRPNSGKSTLLNIIIG 302

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           + ++IVT    TTR ++T  + L+   V + DT GI E    +EK  ++  +  + +ADL
Sbjct: 303 EKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGTLEKAMVRCAWSSLHSADL 362

Query: 302 ILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD------------H 341
           +LL+ +         ++  +     NI  IF+  K D+ S Y  +               
Sbjct: 363 VLLIIDSLKPFDDVTHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTGNHPDSLLF 422

Query: 342 LISSFTGEGLEELINKI---KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
            IS+ +G+ ++ L+  I     I    + +   +    +     +++   +L +  
Sbjct: 423 PISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQQ 478


>gi|99905871|gb|ABF68630.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + S L+
Sbjct: 129 EKERAYAFSSFGIPKSFSISVSHNRGISALIDAVLSALN 167


>gi|312897383|ref|ZP_07756807.1| small GTP-binding protein [Megasphaera micronuciformis F0359]
 gi|310621444|gb|EFQ04980.1| small GTP-binding protein [Megasphaera micronuciformis F0359]
          Length = 402

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 16/176 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +++   GE I  G+     G+ NAGKSSL NA+  +  AIV+D+ GTT D +   ++L  
Sbjct: 3   LNETPRGERIHIGF----FGNRNAGKSSLVNAVTGQYTAIVSDVKGTTTDPVYKAMELLP 58

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISF--P 317
              V + DT G+ +   +     I++T   +   D+ +++ +       + K+ I+    
Sbjct: 59  LGPVVLIDTPGLDDAGKVGLLR-IEKTKEVLRKTDIAVIVTDGTLPLTPSDKELIALVKE 117

Query: 318 KNIDFIFIGTKSDLYSTYTEE--YDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I +  +  K+DL +   EE   +  +S+    G+++L  ++ S++  +  + P 
Sbjct: 118 RKIPYCIVRNKADLLNCDKEETGREIFVSTVAKTGIDKLKERLISLVGVRDIETPI 173


>gi|171059545|ref|YP_001791894.1| GTP-binding protein EngA [Leptothrix cholodnii SP-6]
 gi|238689085|sp|B1XXK9|DER_LEPCP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|170776990|gb|ACB35129.1| small GTP-binding protein [Leptothrix cholodnii SP-6]
          Length = 448

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 91/255 (35%), Gaps = 45/255 (17%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG------------KLGEIIRNGY-KIV 223
           D  +  +       E L         + S I                  E +RN   ++ 
Sbjct: 126 DGPQLAEFYELGMGEPLAVSSAHGQGVRSLIEMALEGIEPPEPEEGYSEEELRNRPTRLA 185

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           + G  N GKS+L N    ++  +  D+PGTTRD + +  +      ++ DTAG+R    +
Sbjct: 186 VAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAIHVPFERGDKKYELIDTAGLRRKGKV 245

Query: 284 V---EKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFIFIGTKSDLY 332
               EK  + +T   + +A+++LLL +      +    I+          +    K D  
Sbjct: 246 FESIEKFSVVKTLQAISDANVVLLLIDATEGVSDQDAHIAGYVLDAGRAVVIAINKWDAI 305

Query: 333 STYTEE----------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            +Y  E                   +IS+   +GL  L   I    ++  +KLP    + 
Sbjct: 306 DSYQRETLQRSIEQRLAFLKFAPVLMISAKKRQGLGPLWKAIDDAWASATRKLPTPQLTR 365

Query: 377 KRHLYHLSQTVRYLE 391
                 L + V Y +
Sbjct: 366 -----LLLEAVEYQQ 375



 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+LFN L  +  AIV D  G TRD    D  L+ +   + DT G   ++
Sbjct: 5   IAIVGRPNVGKSTLFNRLTGRRDAIVADFAGLTRDRHYGDGKLDNHEFIVIDTGGFEPDS 64

Query: 281 DDIVEKEGIKRTFLEVEN 298
              + KE  K+T   V  
Sbjct: 65  TSGIYKEMAKQTRQAVAE 82


>gi|122702501|emb|CAL88441.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 ERERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122702281|emb|CAL88331.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L GY V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKLIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|170287887|ref|YP_001738125.1| GTP-binding protein Era [Thermotoga sp. RQ2]
 gi|170175390|gb|ACB08442.1| GTP-binding protein Era [Thermotoga sp. RQ2]
          Length = 301

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I++G+ + + G  N GKS+  N +  + V IV+D P TTR+ +      +   +   DT 
Sbjct: 4   IKSGF-VALAGKPNVGKSTFINVVMGRKVVIVSDKPQTTRNRINCIYTDKDSQIIFVDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           GI +    + +  +K     ++  DLIL + +             EI        I    
Sbjct: 63  GIHKPLHRLGEYMVKAAVQALKGVDLILFMLDAADGFTKTDEHVAEIVNESGTKTIIAVN 122

Query: 328 KSDLYSTYTEEY--------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D+      +                H IS+  GEG+ E++ KIK  L    +  P  +
Sbjct: 123 KIDVAGEEKAKAVGQLAKSMVENVVSVHYISALKGEGVFEVLEKIKEELPEGPQYYPEDM 182

Query: 374 PSHKRHLYHLSQTVR 388
            + +   +  ++ +R
Sbjct: 183 VTDRPLSFMAAEIIR 197


>gi|292806560|gb|ADE42410.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ +   L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLRAL 166


>gi|122702515|emb|CAL88448.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ K+         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKKIKAINLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAILSALN 167


>gi|292806476|gb|ADE42368.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYTFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700887|emb|CAL88032.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQVSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|122700783|emb|CAL87980.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I  +L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVLN 167


>gi|313897353|ref|ZP_07830896.1| ribosome biogenesis GTPase Era [Clostridium sp. HGF2]
 gi|312957723|gb|EFR39348.1| ribosome biogenesis GTPase Era [Clostridium sp. HGF2]
          Length = 299

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ I I+G  NAGKS+L NA+ ++ VAI T  P TTR+ ++  L  E       DT 
Sbjct: 3   YKSGF-ISIIGRPNAGKSTLLNAILQEKVAITTPKPQTTRNNISGILTREDAQFVFVDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPK----NIDFIFIGT 327
           GI +    + +   +  +  +  AD+   + +         E    K     I    I  
Sbjct: 62  GIHKPKHELGRTLNRNAYTAIAEADVNYWMVDATQPFGSGDEFILEKMKSAQIPVFLILN 121

Query: 328 KSDLYSTYT-------------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL                        +S+   E +E L+   KS L    K  P  + 
Sbjct: 122 KIDLLDKEAVLTTLSKWQSRMQFAEIFPVSALKRENVEHLLEVTKSYLQEGVKYFPDDMI 181

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           S     + +++ +R   +   NE+
Sbjct: 182 SDHGENFQIAEIIREKVLYKTNEE 205


>gi|241759164|ref|ZP_04757272.1| putative tRNA modification GTPase TrmE [Neisseria flavescens SK114]
 gi|241320583|gb|EER56860.1| putative tRNA modification GTPase TrmE [Neisseria flavescens SK114]
          Length = 145

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 13/137 (9%)

Query: 315 SFPKNIDFIFIGTKSDL-----------YSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           S P+ +  I I  K+DL            +    E    +S+ TG GL+ L + +   + 
Sbjct: 11  SLPEGLKKIEIHNKADLTGEPVAVRSDGLTQTGAESVISLSAKTGAGLDLLKHALLQEVG 70

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            +  +      +  RHL  L +    LE A+L + +  +++ AE+LRLA  +  +ITG  
Sbjct: 71  WQ-GESESLFLARSRHLNALHEAEAELENAALCDNNQ-IELFAEHLRLAQNACSEITGEF 128

Query: 424 DVEQLLDIIFSKFCIGK 440
             + LL +IFS+FCIGK
Sbjct: 129 TADDLLGVIFSRFCIGK 145


>gi|297571444|ref|YP_003697218.1| ribosome-associated GTPase EngA [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931791|gb|ADH92599.1| ribosome-associated GTPase EngA [Arcanobacterium haemolyticum DSM
           20595]
          Length = 504

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+L N +  + VA+V D PG TRD +  D +  G    I DT G     
Sbjct: 69  LAILGRPNVGKSTLVNRIVGQRVAVVQDTPGVTRDRVKYDAEWAGVDFTIMDTGGWEAVV 128

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSDLYS 333
           + ++K     +   +  AD+++L+ +         ++ +   +      I    K D   
Sbjct: 129 EGIDKSVSDSSEQAINEADVVMLVVDATVGATDTDERMVRLLRRSGKPVILAANKVDSPQ 188

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSN 364
             ++            H IS+  G G  +L++    +L  
Sbjct: 189 GESDAAALWNLGLGEPHPISALHGRGTGDLLHAAVKMLPE 228



 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA  +  +V ++ GTTRD +   ++L+G      DTAG+R  
Sbjct: 243 RVALVGRPNVGKSSLLNQLAGSNRVVVNELAGTTRDPVDEVIELDGQPWTFVDTAGVRRR 302

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKS 329
                  +     RT   +E A+L L+L + +   ++++I   +         + I  K 
Sbjct: 303 VHLTKGADYYATLRTQSAIEKAELGLVLMDASEPMAEQDIRVVQQVIDAGRAVVVIMNKW 362

Query: 330 DLYS-----TYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL           E++             +S+ TG     L   + + L +   ++P  
Sbjct: 363 DLVEEERRLELDREFERELVQIQWAERINLSAKTGWHTNRLTRAMSTALESWDMRIPTG 421


>gi|122701399|emb|CAL88089.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ +++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEMELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I + L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNAL 166


>gi|122701381|emb|CAL88080.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKVAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122702439|emb|CAL88410.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKTLNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|332670393|ref|YP_004453401.1| ribosome-associated GTPase EngA [Cellulomonas fimi ATCC 484]
 gi|332339431|gb|AEE46014.1| ribosome-associated GTPase EngA [Cellulomonas fimi ATCC 484]
          Length = 491

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++   +  G    + DT G     
Sbjct: 59  LAVVGRPNVGKSTLVNRILGRREAVVEDMPGVTRDRVSYPAEWAGRRFTLVDTGGWEVDV 118

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSDLYS 333
             ++    ++  + +  AD +L + +         ++ +   +      +    K D  +
Sbjct: 119 AGIDARVAEQAEVAIALADAVLFVVDATVGATDTDEQVVRLLRRSGKPVVLCANKVDGPA 178

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSN 364
              +            H +S+  G G  +L+      L  
Sbjct: 179 VEADAAALWALGLGEPHPVSALHGRGTGDLLEAAVDALPE 218



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 99/290 (34%), Gaps = 36/290 (12%)

Query: 116 RAFENGKIDLLEAESLADLISS-----ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170
           R  E  ++ +  A+++  ++ +     +T+ Q    +      +     +         +
Sbjct: 124 RVAEQAEVAIALADAVLFVVDATVGATDTDEQVVRLLRRSGKPVVLCANKVDGPAVEADA 183

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSN 229
                L   E   V     +        L+  + +        + + +G + + ++G  N
Sbjct: 184 AALWALGLGEPHPVSALHGR---GTGDLLEAAVDALPEVSAHAKPVPDGPRRVALVGRPN 240

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEK 286
            GKSSL N +   +  +V  + GTTRD +   + L+G      DTAGIR         + 
Sbjct: 241 VGKSSLLNKVLGAERVVVDAVAGTTRDPVDELVLLKGEPWVFVDTAGIRRRVHQTSGPDF 300

Query: 287 EGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEE 338
               RT   +E A++ ++L + ++       +            +    K DL       
Sbjct: 301 YASLRTQAAIEKAEVAVVLVDASAPLTEQDTRVISQVVDAGRALVVAYNKWDLMDEDRRP 360

Query: 339 Y----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           Y                   IS+ TG   + L+  ++  L +   ++   
Sbjct: 361 YLEREIEKDLVQVQWAPRVNISARTGWHTDRLVPALQRSLESWDTRISTG 410


>gi|254478618|ref|ZP_05091991.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
 gi|214035472|gb|EEB76173.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
          Length = 403

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 19/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSSL NA+  + +AIV+  PGTT D +   +++     V + DTAG
Sbjct: 8   ERLHIAIFGKRNAGKSSLINAITNQPIAIVSPTPGTTTDPVYKSMEILPLGPVVLVDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK----EINSKK---EISFPKNIDFIFIGTKS 329
           I +  ++  K  +++T   +   D+ +L+     ++N +K   E+   K +  I +  K 
Sbjct: 68  IDDVGELG-KLRVEKTLEVLNRTDIAILVVSEIDDLNFEKQLIELFREKKVPSIGVLNKI 126

Query: 330 DLYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKFKKL 369
           DL   Y E+  +           +S  T +G+EEL N+I   + +  + L
Sbjct: 127 DLDKDYKEKLSYLQSTLGIKFLPVSCATLKGIEELKNEIARSVPDVGEDL 176


>gi|122702425|emb|CAL88403.1| GTPase [Helicobacter pylori]
 gi|122702533|emb|CAL88456.1| GTPase [Helicobacter pylori]
 gi|122702693|emb|CAL88536.1| GTPase [Helicobacter pylori]
 gi|292806584|gb|ADE42422.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSAL 166


>gi|83589464|ref|YP_429473.1| GTP-binding protein Era [Moorella thermoacetica ATCC 39073]
 gi|83572378|gb|ABC18930.1| GTP-binding protein Era [Moorella thermoacetica ATCC 39073]
          Length = 301

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 23/220 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  R+G+   ++G  NAGKS+L N L  + VAI++D P TTR+ +   L    Y +  
Sbjct: 1   MAEAYRSGF-AGLIGRPNAGKSTLLNRLVGRKVAIMSDKPQTTRNKILGVLTATAYQIVF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFI 323
            DT GI +    + +  +      +   D++L + +   +        IS  K  ++  I
Sbjct: 60  LDTPGIHKPRHQLGEYMVAVARNTLAEVDVVLYVVDAAEEPGAGEEYIISRLKEVDVPVI 119

Query: 324 FIGTKSDLYSTYT----EEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            I  K DL +  T    EE+            +S+  G  L+ L + I + L    +  P
Sbjct: 120 LILNKMDLVAGETLIRREEFFRARLDVAAVRAVSALVGTNLDTLPDLISTYLPPGPQYYP 179

Query: 371 FSIPSHKRHLYHLSQTVR-YLEMASLNEKDCGLDIIAENL 409
             + + +   + +++ +R  +  A+  E    + ++ E +
Sbjct: 180 PDMVTDQPEKFVMAELIREQVLRATREEVPHAVAVVVEEI 219


>gi|122701333|emb|CAL88056.1| GTPase [Helicobacter pylori]
 gi|122702713|emb|CAL88546.1| GTPase [Helicobacter pylori]
 gi|292806502|gb|ADE42381.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLRALN 167


>gi|122700609|emb|CAL87893.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINSNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILRTLN 167


>gi|294628589|ref|ZP_06707149.1| ribosome-associated GTPase EngA [Streptomyces sp. e14]
 gi|292831922|gb|EFF90271.1| ribosome-associated GTPase EngA [Streptomyces sp. e14]
          Length = 494

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 81/205 (39%), Gaps = 23/205 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D +     ++  +  F   D+   I +   G +      + ++G  N GKS+L N +  +
Sbjct: 22  DAEYAEFMQLAAEEGFDVADVEGAIEEAGHGPL----PVLAVVGRPNVGKSTLVNRIIGR 77

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +E AD +
Sbjct: 78  REAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDVLGIDASVAAQAEYAIEAADAV 137

Query: 303 LLLKEI--------NSKKEISFPKNIDFIFIGTKSD----------LYSTYTEEYDHLIS 344
           + + +          +   +        +    K D          L+S    E  H +S
Sbjct: 138 VFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGQSGEADAAYLWSLGLGE-PHPVS 196

Query: 345 SFTGEGLEELINKIKSILSNKFKKL 369
           +  G G  ++++++  +L    ++ 
Sbjct: 197 ALHGRGTGDMLDRVLEVLPEAPRET 221



 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 103/282 (36%), Gaps = 32/282 (11%)

Query: 123 IDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
             +  A+++  ++ ++        ++  +  +         +K+       +A   +S  
Sbjct: 129 YAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGQSGEADAAYLWSLG 188

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY----KIVILGHSNAGKSSLFN 237
               +  S         + + +   + +         G     ++ ++G  N GKSSL N
Sbjct: 189 LGEPHPVSALHGRGTGDMLDRVLEVLPEAPRETFGGTGIGGPRRVALIGRPNVGKSSLLN 248

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFL 294
            +A ++  +V ++ GTTRD +   ++L G   K  DTAGIR+   + +        RT  
Sbjct: 249 KVAGEERVVVDELAGTTRDPVDELIELGGKTWKFVDTAGIRKRVHLQQGADYYASLRTAA 308

Query: 295 EVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYSTYTEEY------- 339
            VE A++ ++L + +    +        +       +    K D        Y       
Sbjct: 309 AVEKAEVAVVLIDASESVSVQDQRIITMAVEAGRALVVAYNKWDTLDEERRFYLEREIET 368

Query: 340 ---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                       +S+ TG  +E L+  I++ L+    ++P  
Sbjct: 369 DLAQIAWAPRVNVSARTGRHMERLVPAIETALAGWETRVPTG 410


>gi|242255946|gb|ACS88957.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG SN GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQSNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|292806610|gb|ADE42435.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +  +L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRVLN 167


>gi|224417838|ref|ZP_03655844.1| GTP-binding protein EngA [Helicobacter canadensis MIT 98-5491]
          Length = 473

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 25/178 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKSSL NAL  ++ ++V+   GTT D +    ++EG  V   DTAGIR 
Sbjct: 205 INIGIIGRVNVGKSSLLNALLGQERSVVSSKAGTTIDPVDEMGEIEGRKVNFVDTAGIRR 264

Query: 280 TDDIV--EKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKS 329
              I   EK  + RT   ++ +D+ +L+ + +S       K         +  I +  K 
Sbjct: 265 RGKIEGLEKFALNRTREILKRSDIAVLVLDASSPFVELDEKIAGLIDEFKLGVIVVLNKW 324

Query: 330 DL----YSTYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D+    Y    E++               S+  G  +++L  +I  +  +   ++P +
Sbjct: 325 DIAHKDYKGIMEDFRLRFKFLDYAPVLTISAKNGRHIQKLEQEILKVYEHFSYRIPTA 382



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKSSLFN   K  +AI ++I GTTRDV   ++ L+     + DT G+ E+D
Sbjct: 15  IAIMGRPNAGKSSLFNRFCKSRIAITSEIAGTTRDVKKANVSLKDTPFLLLDTGGLDESD 74

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
            +   +  K +    E+ADLIL + +                  KN +   +  K D   
Sbjct: 75  SLF-VQVTKHSHNAGESADLILYVVDGKMPPNPLDKKIFYTLQKKNPNIFLVVNKIDNDK 133

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSIL 362
             +  ++           IS     G+ +L   I  +L
Sbjct: 134 EQSNAWEFSEFGACHLFFISVSHNRGIGKLEESIVRLL 171


>gi|122702519|emb|CAL88449.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|122700709|emb|CAL87943.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKAINLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|237752638|ref|ZP_04583118.1| GTP-binding protein engA [Helicobacter winghamensis ATCC BAA-430]
 gi|229376127|gb|EEO26218.1| GTP-binding protein engA [Helicobacter winghamensis ATCC BAA-430]
          Length = 462

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKSSLFN   K+ +AI ++I GTTRDV    + L+     + DT G+ + D
Sbjct: 8   IAIVGRPNAGKSSLFNRFCKQRIAITSEIAGTTRDVKKARILLQDLPFLLFDTGGLDDKD 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSDLYS 333
            + +    K +    E+ADLIL L +  +  E +          KN +   +  K D   
Sbjct: 68  ALFQSVS-KHSQRTGESADLILYLVDGKTPPEQADKEIFYSLEKKNPNIFLVINKIDNDK 126

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
                ++ +         IS     G+ EL   I   L N+
Sbjct: 127 EKQNAWEFMEFGAKNVFYISVAHNRGILELEKAIVKALKNE 167



 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 26/207 (12%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           E L    F    +   +   +  + I     I I+G  N GKSSL NAL K++ ++V+++
Sbjct: 170 ESLIKAEFNDESLEDFLEN-ETEKTINELINIGIIGRVNVGKSSLLNALLKEERSVVSNV 228

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV--EKEGIKRTFLEVENADLILLLKEI 308
            GTT D +    ++ G  V   DTAGIR    I   EK  + RT   +E  D+ +L+ + 
Sbjct: 229 AGTTIDPVDEIGEINGRRVNFVDTAGIRRRGKIEGLEKFALNRTRTILERTDIAILVLDA 288

Query: 309 NSKKEISFPK--------NIDFIFIGTKSDL---------------YSTYTEEYDHLISS 345
           +        K         +  I +  K D+               +          IS+
Sbjct: 289 SVPFVELDEKIAGLIDEFKLGVIVVFNKWDIAHKDFKGIMEDFKLRFKFLEYAPILTISA 348

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS 372
             G  +++L  +I  + +N   ++P +
Sbjct: 349 KNGRHIQKLEEEILRVYANFSFRIPTA 375


>gi|172040767|ref|YP_001800481.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium
           urealyticum DSM 7109]
 gi|171852071|emb|CAQ05047.1| cytidylate kinase [Corynebacterium urealyticum DSM 7109]
          Length = 784

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            +        +F   E  +  +  E + +   + +++ +        E +     + I+G
Sbjct: 306 QLGEHYLQAENFDLLESDEEDTDWESIEEAFGIADELEA------QKEALC---TVAIVG 356

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
             N GKS+L N    +  A+V D PG TRD ++   D  G    + DT G       +  
Sbjct: 357 RPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGDWGGRRFWVQDTGGWDPDAKGIHA 416

Query: 287 EGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTK-------SDL 331
              ++    +  AD I+ + +    I    E+   K    ++  I +  K       +D+
Sbjct: 417 AIARQAETAMATADAIVFVVDTKVGITETDEVIARKLQRSDVPVIVVANKFESDTQYADM 476

Query: 332 YSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              +    D+    S+  G G  ++++K+  +     ++L       +  L
Sbjct: 477 AEFWALGLDNPYPVSALHGRGAADVLDKLLEVFPETPRELSVVSGPRRVAL 527



 Score = 96.5 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 81/218 (37%), Gaps = 28/218 (12%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAK 241
           D     S         + + +     +      + +G + + ++G  N GKSSL N ++ 
Sbjct: 485 DNPYPVSALHGRGAADVLDKLLEVFPETPRELSVVSGPRRVALVGRPNVGKSSLLNKISG 544

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD---IVEKEGIKRTFLEVEN 298
           +  ++V ++ GTT D +   ++LE    +  DTAGIR+        E     RT   ++ 
Sbjct: 545 EQRSVVDNVAGTTVDPVDSIVELEERTWRFVDTAGIRKKVKNAVGHEYYASLRTRAAIDA 604

Query: 299 ADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------- 339
           +++++ L + +            +        +    K DL      E            
Sbjct: 605 SEVVVFLADASEPIAEQDQRVLRMILDAGKALVVAFNKWDLVDEDRRELLEREIDLQLSH 664

Query: 340 -----DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   IS+ TG  L++L   +   L +  +++P  
Sbjct: 665 VPWARRVNISAKTGRALQKLEPAMMEALDSWDQRIPTG 702


>gi|93004286|gb|ABE97063.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ +   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRAL 166


>gi|292806460|gb|ADE42360.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ +   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRAL 166


>gi|292806430|gb|ADE42345.1| GTP-binding protein-like protein [Helicobacter pylori]
 gi|317452821|emb|CBL87846.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N++   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINLNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|205374162|ref|ZP_03226962.1| GTP-binding protein Era [Bacillus coahuilensis m4-4]
          Length = 306

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 82/196 (41%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +   L L    +   D
Sbjct: 8   QAFKSGF-VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTLADSQIVFID 66

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFI 325
           T GI +    +    +K     ++  D++L + ++        +  I   KN       +
Sbjct: 67  TPGIHKPKHKLGDFMMKVAQNTLKEVDIVLFMVDVAEGIGKGDEFIIEKLKNVSTPVFLV 126

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         +   Y   ++      IS+  G  ++ L++++K  +    +  P  
Sbjct: 127 LNKIDAIHPDELFSIIEEYRSRFEFTEIVPISALEGNNVDTLLDQLKKYMPEGPQYYPAD 186

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +S+ +R
Sbjct: 187 QVTDHPEHFIVSELIR 202


>gi|122701613|emb|CAL88196.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLNTLN 167


>gi|122700637|emb|CAL87907.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE           +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAARMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|253827178|ref|ZP_04870063.1| GTP-binding protein EngA [Helicobacter canadensis MIT 98-5491]
 gi|313141379|ref|ZP_07803572.1| GTP-binding protein engA [Helicobacter canadensis MIT 98-5491]
 gi|253510584|gb|EES89243.1| GTP-binding protein EngA [Helicobacter canadensis MIT 98-5491]
 gi|313130410|gb|EFR48027.1| GTP-binding protein engA [Helicobacter canadensis MIT 98-5491]
          Length = 466

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 25/178 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKSSL NAL  ++ ++V+   GTT D +    ++EG  V   DTAGIR 
Sbjct: 198 INIGIIGRVNVGKSSLLNALLGQERSVVSSKAGTTIDPVDEMGEIEGRKVNFVDTAGIRR 257

Query: 280 TDDIV--EKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKS 329
              I   EK  + RT   ++ +D+ +L+ + +S       K         +  I +  K 
Sbjct: 258 RGKIEGLEKFALNRTREILKRSDIAVLVLDASSPFVELDEKIAGLIDEFKLGVIVVLNKW 317

Query: 330 DL----YSTYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D+    Y    E++               S+  G  +++L  +I  +  +   ++P +
Sbjct: 318 DIAHKDYKGIMEDFRLRFKFLDYAPVLTISAKNGRHIQKLEQEILKVYEHFSYRIPTA 375



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKSSLFN   K  +AI ++I GTTRDV   ++ L+     + DT G+ E+D
Sbjct: 8   IAIMGRPNAGKSSLFNRFCKSRIAITSEIAGTTRDVKKANVSLKDTPFLLLDTGGLDESD 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
            +   +  K +    E+ADLIL + +                  KN +   +  K D   
Sbjct: 68  SLF-VQVTKHSHNAGESADLILYVVDGKMPPNPLDKKIFYTLQKKNPNIFLVVNKIDNDK 126

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSIL 362
             +  ++           IS     G+ +L   I  +L
Sbjct: 127 EQSNAWEFSEFGACHLFFISVSHNRGIGKLEESIVRLL 164


>gi|309775503|ref|ZP_07670503.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916597|gb|EFP62337.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 173

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 18/165 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           NG  + I+G  N GKS++FN +  +  +IV D PG TRD +    +      ++ DT GI
Sbjct: 3   NGI-VAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTREFRVIDTGGI 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFIGTKS 329
           +  +   + E   +  + ++ AD I+ +         +      +        I    K 
Sbjct: 62  QLANQDFQTEINMQVEIAIDEADCIVFVVSGKDGLTHDDEYVARLLHRTKKPVILAVNKV 121

Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
           D ++     Y+           +S   G G+ ++++ I   L  K
Sbjct: 122 DDFAQNDAIYEFYSLGLGDPLAVSGAHGIGIGDVLDAIIHALPKK 166


>gi|300858400|ref|YP_003783383.1| hypothetical protein cpfrc_00982 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685854|gb|ADK28776.1| hypothetical protein cpfrc_00982 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330667|gb|ADL20861.1| GTP-binding protein EngA [Corynebacterium pseudotuberculosis 1002]
 gi|308276351|gb|ADO26250.1| GTP-binding protein EngA [Corynebacterium pseudotuberculosis I19]
          Length = 540

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 84/219 (38%), Gaps = 25/219 (11%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           F+  + +F+E +  +++  ++          ++         G    N   + I+G  N 
Sbjct: 65  FVFDESEFAEPDFGEDYGEEDW--------EELERSFGIDAEGVTRENLCTVAIVGRPNV 116

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSL N    +  A+V D PG TRD ++   D  G    + DT G       +     +
Sbjct: 117 GKSSLVNRFLGRREAVVEDFPGVTRDRVSYLADWGGQRFWVQDTGGWDPNVKGIHGAIAR 176

Query: 291 RTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL 342
           +  + +  AD+I+++ +    I     +   K     +  + +  K D  S Y +  +  
Sbjct: 177 QAEVAMATADVIIMVVDTKVGITETDSVMARKLQRAEVPVLLVANKFDSDSQYADMAEFY 236

Query: 343 ---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                    +S+  G G  +++ ++ +    + +     
Sbjct: 237 ALGLGDPWPVSAQHGRGGADVLEQVLAAFPEEPRSASIV 275



 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 85/217 (39%), Gaps = 27/217 (12%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D    S++        L+  +++   + +   I+    ++ ++G  N GKSSL N ++ +
Sbjct: 242 DPWPVSAQHGRGGADVLEQVLAAFPEEPRSASIVEGPRRVALVGKPNVGKSSLLNKISGE 301

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENA 299
           D ++V +  GTT D +   + L+  L K  DTAG+R+        E     RT   ++ A
Sbjct: 302 DRSVVDNASGTTVDPVDSLVQLDQKLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAA 361

Query: 300 DLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHL---- 342
           ++ + + + +            +        + +  K DL           E D      
Sbjct: 362 EVCVFMIDSSEPVSEQDQRVLAMILEAGKALVLVFNKWDLMDEDRRWELDREIDQQLAHI 421

Query: 343 -------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  IS+ TG  L++L   +   L N  K++   
Sbjct: 422 PWVKRVNISAKTGRALQKLEPYMLEALENWDKRVSTG 458


>gi|122702725|emb|CAL88552.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKVLNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + + L
Sbjct: 129 ERERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNAL 166


>gi|116617891|ref|YP_818262.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122271908|sp|Q03Y33|ERA_LEUMM RecName: Full=GTPase Era
 gi|116096738|gb|ABJ61889.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 303

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   V   DT G+ +  
Sbjct: 11  VAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDDAQVVFIDTPGVHKPQ 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDL- 331
           + +    +K  F  +  AD I  + + +  +          +   KN     +  K DL 
Sbjct: 71  NSLGDFMVKSAFSALHEADAIWFVVDASMARGRGDDFIIDRLQEVKNTPIYLLINKVDLL 130

Query: 332 --------YSTYTEEYDHL-----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                    ++Y  +         IS+  G+ + EL++ I S L    +       +   
Sbjct: 131 APNDLLDVIASYQNDAPEWAEVFPISATEGDNVPELLDNIVSHLDEGPQYFDADQLTDHP 190

Query: 379 HLYHLSQTVR 388
             + + + +R
Sbjct: 191 ERFVIGELIR 200


>gi|226306741|ref|YP_002766701.1| GTP-binding protein EngA [Rhodococcus erythropolis PR4]
 gi|226185858|dbj|BAH33962.1| probable GTP-binding protein EngA [Rhodococcus erythropolis PR4]
          Length = 475

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 28/203 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            L +++   + +     I   G + + ++G  N GKSSL N L+  + ++V ++ GTT D
Sbjct: 189 DLLDEVLEKLPETPREGIPGGGPRRVALVGKPNVGKSSLLNKLSGDERSVVHNVAGTTVD 248

Query: 257 VLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            +   ++L G   +  DTAG+R+        E     RT   +E A++ +LL + +    
Sbjct: 249 PVDSIVELGGRPWRFVDTAGLRKRVSHASGAEFYASLRTKSAIEAAEVAILLIDAHEPIT 308

Query: 312 ----KEISFPKNIDFIFIG--TKSDLYST-----YTEEYD-----------HLISSFTGE 349
               + +S   +     +    K DL          +E D             IS+ TG 
Sbjct: 309 EQDLRVLSMVADTGRALVIAFNKWDLVDEDRRLMLDKEVDRDLVRVPWAQRVNISAHTGR 368

Query: 350 GLEELINKIKSILSNKFKKLPFS 372
            + +L+  + + L +  K++P  
Sbjct: 369 AVAKLVPALDTALESWDKRIPTG 391



 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 17/180 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +     GE       + ++G  N GKS+L N +  +  A+V DIPG TRD ++ + +  G
Sbjct: 26  LEADGEGEAHIAVPTLAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWAG 85

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPK 318
               + DT G       +++   ++  L +  AD ILL+ +          +   +    
Sbjct: 86  RRFLVQDTGGWEPDAKGLQQAVARQAELAMGTADAILLVVDAVVGATTTDEAVARVLRRS 145

Query: 319 NIDFIFIGTKSDLYSTYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
               I +  K D   T +E            + +S+  G G  +L++++   L    ++ 
Sbjct: 146 KTPVILVANKVDDGRTESEVAALWSLGLGQPYSVSATHGRGTGDLLDEVLEKLPETPREG 205


>gi|302206113|gb|ADL10455.1| GTP-binding protein EngA [Corynebacterium pseudotuberculosis C231]
          Length = 540

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 84/219 (38%), Gaps = 25/219 (11%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           F+  + +F+E +  +++  ++          ++         G    N   + I+G  N 
Sbjct: 65  FVFDESEFAEPDFGEDYGEEDW--------EELERSFGIDAEGVTRENLCTVAIVGRPNV 116

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKSSL N    +  A+V D PG TRD ++   D  G    + DT G       +     +
Sbjct: 117 GKSSLVNRFLGRREAVVEDFPGVTRDRVSYLADWGGQRFWVQDTGGWDPNVKGIHGAIAR 176

Query: 291 RTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL 342
           +  + +  AD+I+++ +    I     +   K     +  + +  K D  S Y +  +  
Sbjct: 177 QAEVAMATADVIIMVVDTKVGITETDSVMARKLQRAEVPVLLVANKFDSDSQYADMAEFY 236

Query: 343 ---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                    +S+  G G  +++ ++ +    + +     
Sbjct: 237 ALALGDPWPVSAQHGRGGADVLEQVLAAFPEEPRSASIV 275



 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 85/217 (39%), Gaps = 27/217 (12%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D    S++        L+  +++   + +   I+    ++ ++G  N GKSSL N ++ +
Sbjct: 242 DPWPVSAQHGRGGADVLEQVLAAFPEEPRSASIVEGPRRVALVGKPNVGKSSLLNKISGE 301

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENA 299
           D ++V +  GTT D +   + L+  L K  DTAG+R+        E     RT   ++ A
Sbjct: 302 DRSVVDNASGTTVDPVDSLVQLDQKLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAA 361

Query: 300 DLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHL---- 342
           ++ + + + +            +        + +  K DL           E D      
Sbjct: 362 EVCVFMIDSSEPVSEQDQRVLAMILEAGKALVLVFNKWDLMDEDRRWELDREIDQQLAHI 421

Query: 343 -------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  IS+ TG  L++L   +   L N  K++   
Sbjct: 422 PWVKRVNISAKTGRALQKLEPYMLEALENWDKRVSTG 458


>gi|4467679|emb|CAB37791.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +  S       K        N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKPAQMSDLILYVVDGKSTPSDEDLKLFREVFKTNPNCFLVINKIDTDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|262196911|ref|YP_003268120.1| ribosome-associated GTPase EngA [Haliangium ochraceum DSM 14365]
 gi|262080258|gb|ACY16227.1| ribosome-associated GTPase EngA [Haliangium ochraceum DSM 14365]
          Length = 518

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 28/185 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ +LG  NAGKSSL N L   + ++V   PGTT D +    +  G    + DTAGIR 
Sbjct: 242 LRVAMLGKPNAGKSSLVNRLVGSERSLVHHQPGTTMDPVDTPFEFAGRSYVLVDTAGIRR 301

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
               +   EK  +     ++E AD+++L+ +     S+++              +    K
Sbjct: 302 RARVEAETEKIAVSMAISQIERADIVVLVIDGKLGPSEQDARLAGLVEDSGRGLVVAVNK 361

Query: 329 SDLYSTYTEEYDHL-----------------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
            DL S                          +S+  G+G+ +L++ +  +     K++P 
Sbjct: 362 VDLLSGVGAGSKVKSALSDTLHFLSYAPMVLVSALRGDGVADLLSTVDRVALEHAKRVPT 421

Query: 372 SIPSH 376
           +  + 
Sbjct: 422 AELNR 426



 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 64/161 (39%), Gaps = 21/161 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L+N L     A+V D PG TRD         G+ +++ DT G+ + +
Sbjct: 6   IAIVGRPNVGKSTLYNRLVGGRPALVHDTPGLTRDRRYGAFSYMGHRLRLVDTGGL-DPE 64

Query: 282 DIVEKEGI---KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
              E  G    ++    ++ A+ +L + +  +                +   +    K D
Sbjct: 65  AAKEVIGAGIHRQADAALQEANAVLFVLDATAGITPLDHEVASKLRKLDKPLLVCANKVD 124

Query: 331 LYS---------TYTEEYDHLISSFTGEGLEELINKIKSIL 362
                              + +S+  G G+++++  + + L
Sbjct: 125 HAKREVLTAELFALGLGDVYPVSATHGRGVDDMLEALVATL 165


>gi|302866909|ref|YP_003835546.1| ribosome-associated GTPase EngA [Micromonospora aurantiaca ATCC
           27029]
 gi|315506749|ref|YP_004085636.1| ribosome-associated gtpase enga [Micromonospora sp. L5]
 gi|302569768|gb|ADL45970.1| ribosome-associated GTPase EngA [Micromonospora aurantiaca ATCC
           27029]
 gi|315413368|gb|ADU11485.1| ribosome-associated GTPase EngA [Micromonospora sp. L5]
          Length = 468

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 31/221 (14%)

Query: 198 FLKNDISSHISQGKL--GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L + I   + +         R   ++ ++G  N GKSSL N  + ++ A+V  + GTT 
Sbjct: 176 DLLDAILDALPEAPKIVENRPRGPRRVALVGRPNVGKSSLLNRFSGEERAVVDSVAGTTV 235

Query: 256 DVLTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLLKEIN--- 309
           D +   +++ G   ++ DTAG+R+        E     RT   +E A++ ++L + +   
Sbjct: 236 DPVDSLVEIGGETWQLVDTAGLRKRVGKASGTEYYASLRTASAIEAAEVAVVLIDSSEVI 295

Query: 310 SKKE-----ISFPKNIDFIFIGTKSDLYST-----YTEEYDH-----------LISSFTG 348
           S+++     +        +    K DL          +E D             +S+ TG
Sbjct: 296 SEQDQRILTMVVESGRALVIAFNKWDLVDGDRRYYLDKEIDRELRRIPWAIRLNLSAKTG 355

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
             +++L   ++  L++   ++P       + L  L Q   +
Sbjct: 356 RAVDKLAPALRKALASWETRIPT--AQLNQWLTALVQATPH 394



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 19/181 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +   GE       + ++G  N GKS+L N +  +  A+V DIPG TRD +  D    G 
Sbjct: 14  PEADSGEPTGPQPVVAVVGRPNVGKSTLVNRIIGRRQAVVEDIPGVTRDRVPYDAQWNGR 73

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKN 319
              + DT G              +  + V  AD++L + +          +  ++     
Sbjct: 74  AFTVVDTGGWEPDAKDRAAAIAAQAEIAVVTADVVLFVVDAMVGSTDVDEAAVKMLRRSA 133

Query: 320 IDFIFIGTKSD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
              I +  K+D          L+S    E    +S+  G G  +L++ I   L    K +
Sbjct: 134 KPVILVANKADNTTIEMEATSLWSLGLGE-PFPVSALHGRGSGDLLDAILDALPEAPKIV 192

Query: 370 P 370
            
Sbjct: 193 E 193


>gi|242255944|gb|ACS88956.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSTL 166


>gi|317453515|emb|CBL87867.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  TLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|317453539|emb|CBL87879.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  TLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLRALN 167


>gi|307328928|ref|ZP_07608097.1| ribosome-associated GTPase EngA [Streptomyces violaceusniger Tu
           4113]
 gi|306885438|gb|EFN16455.1| ribosome-associated GTPase EngA [Streptomyces violaceusniger Tu
           4113]
          Length = 487

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 83/226 (36%), Gaps = 21/226 (9%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +  E  D +     E+     F   ++   ++    G +      + ++G  N GKS+L 
Sbjct: 11  EHGELGDAEYAEFMELAVQEGFDLEEVEGDLAAAGHGPL----PVLAVVGRPNVGKSTLV 66

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N +  +  A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +
Sbjct: 67  NRILGRREAVVEDRPGVTRDRVTYEAEWSGRRFKVVDTGGWEQDVLGLDASVAAQAEFAI 126

Query: 297 ENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------- 339
           E AD ++ + +          +  ++        +    K D  S   +           
Sbjct: 127 EAADAVVFVVDATVGATDTDEAVVKLLRRAGKPVVLCANKVDGPSGEADAAMLWSLGLGE 186

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
            H +S+  G G  ++++ +   L     +   +     R +  + +
Sbjct: 187 PHPVSALHGRGTGDMLDAVLDALPEAPAQTFGATLGGPRRIALVGR 232



 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 105/282 (37%), Gaps = 33/282 (11%)

Query: 123 IDLLEAESLADLISS-----ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
             +  A+++  ++ +     +T+      +      +     +         + +   L 
Sbjct: 124 FAIEAADAVVFVVDATVGATDTDEAVVKLLRRAGKPVVLCANKVDGPSGEADAAMLWSLG 183

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             E   V     +   + +  + + +    +Q   G  +    +I ++G  N GKSSL N
Sbjct: 184 LGEPHPVSALHGRGTGDMLDAVLDALPEAPAQT-FGATLGGPRRIALVGRPNVGKSSLLN 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFL 294
            +A ++  +V ++ GTTRD +   ++L G   K  DTAGIR    + E        RT  
Sbjct: 243 KVANEERVVVNELAGTTRDPVDEIIELGGTTWKFVDTAGIRRRVHLQEGADYYASLRTAA 302

Query: 295 EVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSD---------LYSTYTE 337
            VE A++ ++L + +    +        +       +    K D         L      
Sbjct: 303 AVEKAEVAVVLIDASESISVQDQRIITMAVEAGRALVIAYNKWDTLDEERRYYLEREIET 362

Query: 338 EYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           E   +        S+ TG  +E+L+  I++ L+    ++P  
Sbjct: 363 ELGQIQWAPRVNVSARTGRHMEKLVPAIETALAGWETRVPTG 404


>gi|242255924|gb|ACS88946.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQVSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSAL 166


>gi|118444749|ref|YP_878552.1| GTP-binding protein Era [Clostridium novyi NT]
 gi|189037263|sp|A0Q1Q0|ERA_CLONN RecName: Full=GTPase Era
 gi|118135205|gb|ABK62249.1| GTP-binding protein Era [Clostridium novyi NT]
          Length = 294

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 86/209 (41%), Gaps = 24/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +  + ++IV+  P TTR+ +   L  + Y +   DT GI +  
Sbjct: 7   ISIIGRPNVGKSTLTNEILGEKLSIVSCRPQTTRNNIRAVLTRDDYQLVFLDTPGIHKPR 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLK----EINSKKEISFP----KNIDFIFIGTKSD--- 330
             + +  +K      +  DLI+ +     EI+   E+              +  K D   
Sbjct: 67  HKLGEYMVKAAETSTDEVDLIVFITTPEGEISKGDELILEGLKNSKKPVFLVINKIDENP 126

Query: 331 --LYSTYTEEYDHLI--------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
             L +   ++Y   +        S+   + ++ L+  +   +    K  P  + +  +  
Sbjct: 127 QELVAKTLKQYSEYMDFAEIIPISARKSKNVDTLLELMIKYMPEGPKYYPEDMITDVQER 186

Query: 381 YHLSQTVRYLEMASLNE---KDCGLDIIA 406
           + +S+ +R   +  L+E       ++II+
Sbjct: 187 FVVSEIIREKALKLLSEEVPHGIAVEIIS 215


>gi|256375751|ref|YP_003099411.1| GTP-binding protein EngA [Actinosynnema mirum DSM 43827]
 gi|255920054|gb|ACU35565.1| small GTP-binding protein [Actinosynnema mirum DSM 43827]
          Length = 471

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 17/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D+PG TRD +  D    G    + DT G     
Sbjct: 34  LAIVGRPNVGKSTLVNRIIGRREAVVQDVPGVTRDRVAYDALWNGRKFTVVDTGGWEPDA 93

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             +      +  L ++ AD +LL+ + +        +  ++        + +  K D   
Sbjct: 94  TGMMASVAAQAELAMQTADAVLLVVDASVGATTTDEAVAKVLRRSKAPVLLVANKVDDER 153

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKL 369
              E              +S   G G  ++++KI  +L    +  
Sbjct: 154 LMAEVASLWSLGLGEPMPVSGLHGRGSGDVLDKILEVLPETPRDT 198



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 66/151 (43%), Gaps = 14/151 (9%)

Query: 198 FLKNDISSHISQGKL---GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            + + I   + +      G       ++ ++G  N GKSSL N L  ++ ++V  + GTT
Sbjct: 182 DVLDKILEVLPETPRDTFGANTGGPRRVALVGRPNVGKSSLLNRLTGENRSVVDSVAGTT 241

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEIN-- 309
            D +   ++L+  + +  DTAG+R+  +     E     RT   +E+A++ ++L +    
Sbjct: 242 VDPVDSLVELDDEVWRFVDTAGLRKRVNFASGAEYYASLRTKAAIESAEVAVVLLDAGEP 301

Query: 310 -SKKEIS-----FPKNIDFIFIGTKSDLYST 334
            S++++             +    K DL   
Sbjct: 302 ISEQDLRVLTMVVESGRACVLAFNKWDLVDE 332


>gi|122701345|emb|CAL88062.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERACAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|20807296|ref|NP_622467.1| GTPase [Thermoanaerobacter tengcongensis MB4]
 gi|20515806|gb|AAM24071.1| predicted GTPases [Thermoanaerobacter tengcongensis MB4]
          Length = 409

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 19/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSSL NA+  + +AIV+  PGTT D +   +++     V + DTAG
Sbjct: 14  ERLHIAIFGKRNAGKSSLINAITNQPIAIVSPTPGTTTDPVYKSMEILPLGPVVLVDTAG 73

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK----EINSKKEIS---FPKNIDFIFIGTKS 329
           I +  ++  K  +++T   +   D+ +L+     ++N +K++      K +  I +  K 
Sbjct: 74  IDDVGELG-KLRVEKTLEVLNRTDIAILVVSEIDDLNFEKQLIKLFREKKVPSIGVLNKI 132

Query: 330 DLYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKFKKL 369
           DL   Y E+  +           +S  T +G+EEL N+I   + +  + L
Sbjct: 133 DLDKDYKEKLSYLQSTLGIKFLPVSCATLKGIEELKNEIARSVPDVGEDL 182


>gi|15639676|ref|NP_219126.1| GTP-binding protein EngA [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025914|ref|YP_001933686.1| GTP-binding protein EngA [Treponema pallidum subsp. pallidum SS14]
 gi|8134438|sp|P96128|DER_TREPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|238689339|sp|B2S3S8|DER_TREPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|1732241|gb|AAB38705.1| GTP-binding protein [Treponema pallidum]
 gi|3322993|gb|AAC65658.1| GTP-binding protein [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018489|gb|ACD71107.1| GTP-binding protein [Treponema pallidum subsp. pallidum SS14]
 gi|291060055|gb|ADD72790.1| ribosome-associated GTPase EngA [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 460

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 104/287 (36%), Gaps = 53/287 (18%)

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI---DKLTHIRSFIEAD 175
            +G  +  E E +   +          ++    G     Y         L  + +    +
Sbjct: 113 LDGTCESAEDEEVIQYLRPYWGK-LIAAVNKTEGGEEVHYNYARYGFSTLICVSAEHGRN 171

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSS 234
           +D  E                      I +  S  +  E+ ++   ++ I+G  N GKS+
Sbjct: 172 IDALERAI-------------------IQNLFSVDERRELPKDDVVRLAIVGKPNTGKST 212

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK---EGIKR 291
           L N L ++ V++V D  GTTRDV+T  ++ + Y   I+DTAGIR+   + E      + R
Sbjct: 213 LMNYLMRRTVSLVCDRAGTTRDVVTGHVEFKQYKFIIADTAGIRKRQKVYESIEYYSVIR 272

Query: 292 TFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDH-- 341
               +   D++L + +          K        N+  IF+  K DL    T       
Sbjct: 273 AISILNAVDIVLYIVDARDGFSEQDKKIVSQISKRNLGVIFLLNKWDLLEGSTSLIAKKK 332

Query: 342 ----------------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                            +S+ TG G+ + ++ +  I +    K+  S
Sbjct: 333 RDVRTAFGKMNFVPVVPVSAKTGHGISDALHCVCKIFAQLNTKVETS 379



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 76/171 (44%), Gaps = 20/171 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG---I 277
           ++VI+G  N GKS+LFN L  +  +I ++  G TRD +   + L G+ +++ DT+G    
Sbjct: 22  RVVIVGRPNVGKSTLFNRLLGRRRSITSNTSGVTRDSIEETVILRGFPLRLVDTSGFTVF 81

Query: 278 RETDDIVEKE---GIKRTFLEVENADLILLLKE-----INSKKEISFPKNIDFIFIG--T 327
            E     +      +++T+  ++ AD ILL+ +        ++ I + +      I    
Sbjct: 82  SEKKASRQHIDTLVLEQTYKSIQCADKILLVLDGTCESAEDEEVIQYLRPYWGKLIAAVN 141

Query: 328 KSD-------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           K++        Y+ Y       +S+  G  ++ L   I   L +  ++   
Sbjct: 142 KTEGGEEVHYNYARYGFSTLICVSAEHGRNIDALERAIIQNLFSVDERREL 192


>gi|292806690|gb|ADE42475.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ +E         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSQEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRALN 167


>gi|122700731|emb|CAL87954.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|292806522|gb|ADE42391.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQISDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSAL 166


>gi|122700625|emb|CAL87901.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ +++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEMELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|18075577|emb|CAD11184.1| GTP-binding protein [Helicobacter pylori]
 gi|122702815|emb|CAL88597.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L  + V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLDALN 167


>gi|134299998|ref|YP_001113494.1| small GTP-binding protein [Desulfotomaculum reducens MI-1]
 gi|134052698|gb|ABO50669.1| iron-only hydrogenase maturation protein HydF [Desulfotomaculum
           reducens MI-1]
          Length = 409

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 20/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  NAGKSSL NAL  +D+A+V++IPGTT D +   +++     V I DTAG
Sbjct: 8   NRLHIAIFGRRNAGKSSLINALTSQDIAVVSNIPGTTTDPVYKAMEILPVGPVVIIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTK 328
           I ++ D+ E   +KR+   +  AD++LL+ +  S     E+        K +  + +  K
Sbjct: 68  IDDSGDLGELR-VKRSMDVLNKADMVLLVIDAGSGVTDYELKIARRCQEKKLPVVVVFNK 126

Query: 329 SDLYSTYTEEYD----------HLISSFTGEGLEELINKIKSILSNKFKK 368
            D +    ++ +           ++S+  G+G+ +L   I +     +  
Sbjct: 127 IDAHHVTEQQIEEAKTQLAGPTVVVSALNGQGIGDLKIAIVNTAPATWDD 176


>gi|292806692|gb|ADE42476.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLNAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ +   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRAL 166


>gi|256832504|ref|YP_003161231.1| small GTP-binding protein [Jonesia denitrificans DSM 20603]
 gi|256686035|gb|ACV08928.1| small GTP-binding protein [Jonesia denitrificans DSM 20603]
          Length = 490

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 118/319 (36%), Gaps = 54/319 (16%)

Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSME-------------GMSG 152
           R++ P E++ R F    +D    E+    I +    Q  +++              G + 
Sbjct: 92  RVSYPAEWAGRDFM--LVDTGGWEADVLGIDASVAQQAEVAINLADAVIFVVDSTVGATA 149

Query: 153 ELSSLYGQWID----------KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND 202
               +                K+   ++  +A   +S         S         L + 
Sbjct: 150 TDERVVRLLRQSGKPVVLCANKVDSFKAEADATALWSLGLGEPYPVSALHGRGTGDLLDA 209

Query: 203 ISSHISQ-GKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
               + +  + G +  +G + + ++G  N GKSSL N +A ++  +V D  GTTRD +  
Sbjct: 210 AMKALPRISEHGTVRPDGPRRVALVGRPNVGKSSLLNKVAHENRVVVDDTAGTTRDPVDE 269

Query: 261 DLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN------SK 311
            ++L+G      DTAGIR    ++   +     RT   +E A++ ++L + +       +
Sbjct: 270 LIELKGRPWIFVDTAGIRRRVHMMKGADYYASLRTVAAIEKAEVAVILLDASTTVSEQDQ 329

Query: 312 KEISFPKNIDFIFIG--TKSDLYSTYTEEY----------------DHLISSFTGEGLEE 353
           + IS   +     +    K DL       +                   +S+ TG  L++
Sbjct: 330 RIISSVVDSGRAVVVAFNKWDLVDEDRRRFLDREIERDLGQIQWAPRVNVSARTGWHLDK 389

Query: 354 LINKIKSILSNKFKKLPFS 372
           L+  +   L++   ++P  
Sbjct: 390 LVPALDRALTSWDTRIPTG 408



 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 57  LAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYPAEWAGRDFMLVDTGGWEADV 116

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLYS 333
             ++    ++  + +  AD ++ + +         ++ +   +      +    K D + 
Sbjct: 117 LGIDASVAQQAEVAINLADAVIFVVDSTVGATATDERVVRLLRQSGKPVVLCANKVDSFK 176

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILS 363
              +            + +S+  G G  +L++     L 
Sbjct: 177 AEADATALWSLGLGEPYPVSALHGRGTGDLLDAAMKALP 215


>gi|330752593|emb|CBL87539.1| GTP-binding protein era homolog [uncultured Flavobacteria
           bacterium]
          Length = 295

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 91/217 (41%), Gaps = 22/217 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + I+G+ N GKS+  NAL   D++IVT    TTR  +   ++   + V  SDT G
Sbjct: 8   KSGF-VSIIGNPNVGKSTFMNALLGLDISIVTPKAQTTRHRILGIVNGHNFQVVFSDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--KEISFPK-----NIDFIFIGTKS 329
           I +    ++   +      +++AD+I+ +     +  K+                +  K 
Sbjct: 67  IIKPSYEMQNSMMNFVKDALKDADIIIYMVTAKDENLKDQKLLNQIKKTKSPLFVLINKI 126

Query: 330 DL-------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           D               + +     + IS+  G  + E+ N IK ++ N     P    + 
Sbjct: 127 DKSTQKLVEKKVSYWKTIFPLANVYPISALNGFFISEVFNSIKELIPNSPAYFPKDQITD 186

Query: 377 KRHLYHLSQTVR-YLEMASLNEKDCGLDIIAENLRLA 412
           K   + +++++R  +     NE    +++I E  + +
Sbjct: 187 KPERFFVNESIRKQILQRYKNEIPYSVEVITEEFKES 223


>gi|58696986|ref|ZP_00372467.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila simulans]
 gi|58698319|ref|ZP_00373236.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535192|gb|EAL59274.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58536766|gb|EAL60014.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila simulans]
          Length = 399

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 102/242 (42%), Gaps = 21/242 (8%)

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH-IR 169
             FS +  E  +  L  +  +  L+ ++ + +R    +  +  L     + +  + +   
Sbjct: 21  TSFSLQVIEQIEFSLSSSNIIFFLVDAKVQNERN---KEFAKWLKRKINKPVILIANKCE 77

Query: 170 SFIEADLDFSEEEDV--QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN----GYKIV 223
           S    ++D+ +  D     + S E    ++ L + ++  I        + N      +I 
Sbjct: 78  SHKSENVDYLQFFDFLGPVYISAEHNLGMVDLYDALAGVIENFNENTELPNNELSRLRIA 137

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-- 281
           I+G  N GKS+  N L  ++  I +  PGTTRD + I  D +G L+ + DTAGIR     
Sbjct: 138 IIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRKANV 197

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKE----INSKK----EISFPKNIDFIFIGTKSDLY 332
            D +E   ++++   ++ + +++L+ +    I  +     E +       I +  K DL 
Sbjct: 198 VDGLESRFVEKSMESIKRSHVVVLMLDSLVGIEQQDLSIGEAAIKGGKGIIVVLNKWDLI 257

Query: 333 ST 334
             
Sbjct: 258 GK 259


>gi|282864448|ref|ZP_06273504.1| small GTP-binding protein [Streptomyces sp. ACTE]
 gi|282560935|gb|EFB66481.1| small GTP-binding protein [Streptomyces sp. ACTE]
          Length = 489

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 83/221 (37%), Gaps = 23/221 (10%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D +     E+     F   ++   + +   G +      + ++G  N GKS+L N +  +
Sbjct: 19  DAEYAEFMELAAQEGFDPEEVEGALGEAGHGPL----PVLAVVGRPNVGKSTLVNRIIGR 74

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             A+V D PG TRD ++ + +  G   K+ DT G  +    ++     +    +E AD +
Sbjct: 75  REAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGGWEQDVLGLDASVAAQAEYAIETADAV 134

Query: 303 LLLKEIN--------SKKEISFPKNIDFIFIGTKSD----------LYSTYTEEYDHLIS 344
           + + +          +  ++        +    K D          L+S    E  H +S
Sbjct: 135 VFVVDATVGATDTDEAVVKLLRRAGKPVVLCANKVDGQSGEADATALWSLGLGE-PHPVS 193

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           S  G G  ++++ +   L     +   +     R +  + +
Sbjct: 194 SLHGRGTGDMLDAVLEALPEAPAQTFGTALGGPRRIALIGR 234



 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQGKL---GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            + + +   + +      G  +    +I ++G  N GKSSL N +A +D  +V  + GTT
Sbjct: 202 DMLDAVLEALPEAPAQTFGTALGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNALAGTT 261

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEIN-- 309
           RD +   + L G   K  DTAGIR    + E        RT   VE A++ ++L + +  
Sbjct: 262 RDPVDELIQLGGITWKFIDTAGIRRRVHLQEGADYYASLRTAAAVEKAEVAVILIDASES 321

Query: 310 ----SKKEISFPKNIDFIFIG--TKSD---------LYSTYTEEYDH-------LISSFT 347
                ++ I+   +     +    K D         L      E           +S+ T
Sbjct: 322 ISVQDQRIITMAVDAGRAIVVAFNKWDTLDEERRYYLEREIETELAQIAWAPRVNVSAVT 381

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
           G  +E+L+  I++ +     ++P  
Sbjct: 382 GRHMEKLVPAIETAIDGWETRVPTG 406


>gi|229545169|ref|ZP_04433894.1| GTP-binding protein Era [Enterococcus faecalis TX1322]
 gi|229309714|gb|EEN75701.1| GTP-binding protein Era [Enterococcus faecalis TX1322]
          Length = 300

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +     +    +   DT GI +  
Sbjct: 10  VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGIHKPK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNI--DFIFIGTKSD--- 330
             +    ++  +  +   D  L +   + K+       I   KN       I  K D   
Sbjct: 70  HRLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYLIINKIDKVH 129

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y+++ D      IS+  G   E L++ +   +    +  P    +     
Sbjct: 130 PDDLLSIIEDYSKQMDFKEIIPISATEGNNFEHLMDVLVEQMPEGPQYFPDDQITDHPEY 189

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 190 FIVSELIR 197


>gi|122702493|emb|CAL88437.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L+++ +AI +D+ GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLSRERIAITSDLAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  TLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700781|emb|CAL87979.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLRALN 167


>gi|292806452|gb|ADE42356.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  TLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|297746328|emb|CBI16384.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 15/148 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +    +G   ++ DTAGIR  
Sbjct: 365 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTGPDGQKYRLIDTAGIRRR 424

Query: 281 DDI------VEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDFI-----FIG 326
             +       E   + R F  +  +D++ L+ E  +   +++    + I+        + 
Sbjct: 425 AAVASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEREGKGCLIVV 484

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEEL 354
            K D      ++          E L  L
Sbjct: 485 NKWDTIPNKNQQTATYYEQDVREKLRVL 512



 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 22/155 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKS+LFN L   + AIV D PG TRD L        Y   + DT G+   
Sbjct: 189 RVTIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRAFWGDYEFMVIDTGGVLTI 248

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----------NIDFIFIGTKSD 330
               +    K+    +E + +I+ L +  +    +  +          N   +    K +
Sbjct: 249 SKSQDN---KQATAAIEESSVIIFLVDGQAGLSAADVEIADWLRKNYSNKCIVLAVNKCE 305

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELIN 356
                  +              S+ +G G  EL++
Sbjct: 306 SPKKGIMQALEFWSLGFTPLPISAVSGTGTGELLD 340


>gi|147785731|emb|CAN73088.1| hypothetical protein VITISV_030762 [Vitis vinifera]
          Length = 344

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 15/148 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +    +G   ++ DTAGIR  
Sbjct: 54  IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTGPDGQKYRLIDTAGIRRR 113

Query: 281 DDI------VEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDFI-----FIG 326
             +       E   + R F  +  +D++ L+ E  +   +++    + I+        + 
Sbjct: 114 AAVASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEREGKGCLIVV 173

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEEL 354
            K D      ++          E L  L
Sbjct: 174 NKWDTIPNKNQQTATYYEQDVREKLRVL 201


>gi|75761897|ref|ZP_00741822.1| GTP-binding protein era [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218899466|ref|YP_002447877.1| GTP-binding protein Era [Bacillus cereus G9842]
 gi|74490605|gb|EAO53896.1| GTP-binding protein era [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218541393|gb|ACK93787.1| GTP-binding protein Era [Bacillus cereus G9842]
          Length = 301

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 24/196 (12%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R GYK   + I+G  N GKS+  N +  + +AI++D P TTR+ +          V   D
Sbjct: 3   RKGYKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPK----NIDFIFI 325
           T GI +    +    +K     ++  D++L +          +E    K          +
Sbjct: 63  TPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLV 122

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L   Y + ++      IS+  G  ++ LI  IK  L    +  P +
Sbjct: 123 INKIDQLHPEQLLELIDQYRKLHEFAEIVPISALDGNNVDALIGTIKKYLPEGPQYYPDN 182

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +++ +R
Sbjct: 183 QVTDHPERFIIAELIR 198


>gi|242255940|gb|ACS88954.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ K+         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  VLLSKKIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I ++L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNVLN 167


>gi|122702853|emb|CAL88616.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQISDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|122701419|emb|CAL88099.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKTAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILRAL 166


>gi|122702131|emb|CAL88256.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|297568490|ref|YP_003689834.1| GTP-binding protein Era [Desulfurivibrio alkaliphilus AHT2]
 gi|296924405|gb|ADH85215.1| GTP-binding protein Era [Desulfurivibrio alkaliphilus AHT2]
          Length = 308

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 79/192 (41%), Gaps = 25/192 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L  + ++IV+  P TTR+ +    +     +   DT G+ +  
Sbjct: 15  VALVGPPNAGKSTLLNNLLGQKISIVSPKPQTTRNRVLGVFNQPTRQIVFLDTPGLHQGR 74

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
             +  E +K     V   D +  + +++S +  S P+            N+  + +  K 
Sbjct: 75  SRLNSEMVKIARRTVSEVDAVAYMIDVSSPEADSRPEQRRQAGQLLQRANLPALLLCNKI 134

Query: 330 DLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           D                 Y       +S+ +GEG E L++++  +L    +  P  IP+ 
Sbjct: 135 DQVGKEKLLPVIAAWQEVYPFAAIIPLSALSGEGQETLLDELTRLLPRGPRLFPEDIPTD 194

Query: 377 KRHLYHLSQTVR 388
               +   + +R
Sbjct: 195 ASERFLCGEIIR 206


>gi|291456800|ref|ZP_06596190.1| ribosome-associated GTPase EngA [Bifidobacterium breve DSM 20213]
 gi|291382077|gb|EFE89595.1| ribosome-associated GTPase EngA [Bifidobacterium breve DSM 20213]
          Length = 708

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA  + A+V D+ GTTRD +   +D++G      DTAGI+  
Sbjct: 449 RVALVGRPNVGKSSLLNQLAHSERAVVNDLAGTTRDPVDEIVDIDGEDWLFIDTAGIKRR 508

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKS 329
                  E     RT   +E ++L L+L + +        K            + +  K 
Sbjct: 509 QHKLTGAEYYSSLRTQAAIERSELALILFDASQPISDQDLKVMSTAVDAGRAIVLVFNKW 568

Query: 330 D---------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D         L   +  E+D ++       S+ TG     L   + + L +  +++P  
Sbjct: 569 DAMDEFDKQRLERLWNTEFDRVMWAERVNLSAKTGWHTNRLARAMNTALESWDQRIPTG 627



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 68/385 (17%), Positives = 128/385 (33%), Gaps = 78/385 (20%)

Query: 49  SLRYFFGLDGRILDKGLLI-----VFPS-----------PESFT-GEDS------AEFHV 85
            L+    LD   +D+ ++       F             P  +  GED        E   
Sbjct: 43  CLKSGIDLDAETVDERVITETVGEFFTGDHFDISVDPDDPRVYADGEDISEAIRSTEVST 102

Query: 86  H----GGIAVVNGILEELAKMPNLRLANPGEFSR-RAFENGKIDLLEAES----LADLIS 136
           H      +  V  +L    +    R A+   FS          D+    +    +  L++
Sbjct: 103 HVSKVSNVIPVRNVLIAAQRAYIAREASLDSFSGGLGVVAEGRDITTVVAPDAEVRILLT 162

Query: 137 SETE-MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           +  E  Q R + + + G  +       DK     +   +  D     D  +   +  L+ 
Sbjct: 163 AREEVRQARRTGQAVKGVGAEDVAA-RDKADAKVTSFLSAADGVTTIDNSDMDFEHTLDV 221

Query: 196 ILFLKNDISSH--------------ISQGKLGEIIRNGYK-------------IVILGHS 228
           ++ L  D   +              + +G    I   G++             + I+G  
Sbjct: 222 MIKLIEDAIENQEYERYAANLEGYDLDEGDEELISGRGFEDGARKSGPKPVGVLAIVGRP 281

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           N GKSSL N +  +  A+V D PG TRD ++ D +  G   K+ DT G     + +E   
Sbjct: 282 NVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIESAI 341

Query: 289 IKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYD 340
             +  + V  AD ++ + +       + + I           +    K D  ++     +
Sbjct: 342 ASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRASGKPVVLAVNKIDDNASEYLAAE 401

Query: 341 HL---------ISSFTGEGLEELIN 356
                      IS+  G G+ +L++
Sbjct: 402 FWKLGLGEPYSISAMHGRGVGDLLD 426


>gi|218186089|gb|EEC68516.1| hypothetical protein OsI_36791 [Oryza sativa Indica Group]
          Length = 676

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 15/128 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +    +G   K+ DTAGIR  
Sbjct: 386 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRR 445

Query: 281 DDI------VEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIG 326
             +       E   +KR F  +  +D++ L+ E  +          E    +    + + 
Sbjct: 446 AAVASAGSTTETLSVKRAFRAIRRSDVVALVVEAMACITEQDYKIAERIEKEGKACVIVV 505

Query: 327 TKSDLYST 334
            K D    
Sbjct: 506 NKWDTIPN 513



 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 88/263 (33%), Gaps = 24/263 (9%)

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKND--ISSHISQGKLGEIIRNGYKIVILGHSN 229
           + A  D SE    +     +V +    +++    S HI    L        ++ I+G  N
Sbjct: 119 LGAVADLSERLSRELRIDDDVRDKRRIIRDKTSASKHIPDNLL-------PRVAIIGRPN 171

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
            GKS+LFN L   + AIV D PG TRD L            + DT G+            
Sbjct: 172 VGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGDREFMVIDTGGVITLSKSQAGVME 231

Query: 290 KRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
           +         D I L     + +E +  +      +  K  + +         I    G+
Sbjct: 232 ELAITTTVGMDGIPL-----ASREAAIAR---MPSMIEKQAVAAVDEAAVILFI--VDGQ 281

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD--CGLDIIAE 407
            +  L   +  I  +        I    R  Y   + +  +       K     LD  + 
Sbjct: 282 AVSYLTEWVSKIFQDGLVAADIEIADWLRRNYSDKRIILAVNKCESPRKGQMQALDFWS- 340

Query: 408 NLRLASVSLGKITGCVDVEQLLD 430
            L  + + +  ITG    E LLD
Sbjct: 341 -LGFSPLPISAITGTGTGE-LLD 361


>gi|122701547|emb|CAL88163.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRALN 167


>gi|292806458|gb|ADE42359.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDSAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLRALN 167


>gi|122702535|emb|CAL88457.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSTL 166


>gi|122700701|emb|CAL87939.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILDTLN 167


>gi|255972122|ref|ZP_05422708.1| GTP-binding protein Era [Enterococcus faecalis T1]
 gi|255963140|gb|EET95616.1| GTP-binding protein Era [Enterococcus faecalis T1]
          Length = 300

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +     +    +   DT GI +  
Sbjct: 10  VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGIHKPK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D  L +   + K+        E     N     I  K D   
Sbjct: 70  HCLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYLIINKIDKVH 129

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y+++ D      IS+  G   E L++ +   +    +  P    +     
Sbjct: 130 PDDLLSIIEDYSKQMDFKEIIPISATEGNNFEHLMDVLVEQMPEGPQYFPDDQITDHPEY 189

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 190 FIVSELIR 197


>gi|288574808|ref|ZP_06393165.1| GTP-binding protein Era [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570549|gb|EFC92106.1| GTP-binding protein Era [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 309

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 25/202 (12%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K  E  R+G  + ++G  N GKSSL NAL +    IV+  P TTR+ +    D+EG  + 
Sbjct: 5   KFDEGYRSGV-VAVVGRPNVGKSSLVNALLRCKATIVSPKPQTTRNRIRCIADVEGGQIV 63

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPK--NID 321
            +DT GI +    + +  +    + +++ADLIL +            +  I   K  N  
Sbjct: 64  FTDTPGIHKPQHRLGEAIVDSALVALDDADLILYVISAQDEGITGQDRHIIERLKNSNTP 123

Query: 322 FIFIGTKSD-----------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSNKF 366
            I +  K D           L  TY ++ + +     S+     LE L++ I   +    
Sbjct: 124 VIMVINKVDLLGSKKAKILPLIDTYRKKLNPMDVLPVSAREDINLETLMDFILEHIPEGP 183

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
                 +   +   +  ++ +R
Sbjct: 184 PMYMEDMLIDRSSRFLAAEIIR 205


>gi|254439207|ref|ZP_05052701.1| GTPase, putative [Octadecabacter antarcticus 307]
 gi|198254653|gb|EDY78967.1| GTPase, putative [Octadecabacter antarcticus 307]
          Length = 496

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 18/157 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLGDLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ ++      T   VE AD+ L + +             +I   K+   I    KS+
Sbjct: 63  ATDESLQGRMRALTERAVEMADVCLFMYDARMGIMPADEVFADILRKKSAKVILAANKSE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKI 358
             +      +           +S+  GEGL E+ + +
Sbjct: 123 GRAADAGVIEGFNLGLGEPIRLSAEHGEGLSEMYDVL 159



 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 74/191 (38%), Gaps = 33/191 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG----YLVKISDTA 275
            +I ++G  NAGKS+L N +  +D  +     G TRD +++ +D         V+I DTA
Sbjct: 199 LQIAVVGRPNAGKSTLINQILGEDRLLTGPEAGITRDAISVQMDWGPESATVPVRIFDTA 258

Query: 276 GIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIF 324
           GIR+   +    EK  +      V+ A+++++L ++    E        ++  +    + 
Sbjct: 259 GIRKRAKVQEKLEKLSVADGLRAVKFAEVVVILIDVEIPFEQQDLRLADLAEREGRAVVL 318

Query: 325 IGTKSD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
              K D                  L           +S+ TG G++ L   I        
Sbjct: 319 AVNKWDVEGEKQAKLKELKEQFTRLLPQLKGAPLVTVSAKTGRGIDRLQEAILKAHEVWN 378

Query: 367 KKLPFSIPSHK 377
           +++  +  +  
Sbjct: 379 RRITTAQLNRW 389


>gi|4467653|emb|CAB37778.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V+  DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVECLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDTDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|326403270|ref|YP_004283351.1| GTP-binding protein EngA [Acidiphilium multivorum AIU301]
 gi|325050131|dbj|BAJ80469.1| GTP-binding protein EngA [Acidiphilium multivorum AIU301]
          Length = 451

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 18/162 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I G  N GKS+LFN LA K +A+V D PG TRD      +L G  V++ DTAG+ E 
Sbjct: 10  RVAICGRPNVGKSTLFNRLAGKRIALVADEPGVTRDRKEAWGELAGVKVQLIDTAGLEEA 69

Query: 281 -DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL 331
             D +       T   V+ ADL+L + +  +                    I +  K++ 
Sbjct: 70  PPDTLPGRMRASTGTAVDEADLVLFVFDARAGLLPEDRHFAAWLRRAGKPVIVVANKAEG 129

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSN 364
                   +            S+   EG+ +LI++I   L  
Sbjct: 130 RGGSNAALEAYELGLGEPVAVSAEHNEGVSDLIDRIIEALPE 171



 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 110/316 (34%), Gaps = 39/316 (12%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET----EMQRRLSMEGMSGE 153
           +L     L  A P     R   +    + EA+ +  +  +      E +   +    +G+
Sbjct: 59  QLIDTAGLEEAPPDTLPGRMRASTGTAVDEADLVLFVFDARAGLLPEDRHFAAWLRRAGK 118

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL- 212
              +     +      + +EA   +          S E    +  L + I   + +    
Sbjct: 119 PVIVVANKAEGRGGSNAALEA---YELGLGEPVAVSAEHNEGVSDLIDRIIEALPETDEV 175

Query: 213 -GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVK 270
             E       + I+G  NAGKS+L N L  +   I    PG TRD +  +L D  G   +
Sbjct: 176 EDEDGERPMHLAIVGRPNAGKSTLMNRLLGEQRVITGPEPGLTRDAIAAELTDSAGRRYR 235

Query: 271 ISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKN 319
           + DTAG+R     +  +EK     T   ++ AD ++L  + +            +   + 
Sbjct: 236 LFDTAGLRRRARVEAGLEKLSTSSTIEALKFADTVVLAIDAHEGLHDQDFTIARLIEREG 295

Query: 320 IDFIFIGTKSDLYS-------TYTEEYDHLISSF-----------TGEGLEELINKIKSI 361
              +   TK DL            E  +H +S             TGEG+++L+  ++  
Sbjct: 296 RACVIALTKWDLVEDRDRTRRAILERMEHSLSQMKGITLVPLSGETGEGVKKLLPAVREA 355

Query: 362 LSNKFKKLPFSIPSHK 377
                 ++  S  +  
Sbjct: 356 DRIWNTRVTTSALNRW 371


>gi|119953297|ref|YP_945506.1| GTP-binding protein EngA [Borrelia turicatae 91E135]
 gi|119862068|gb|AAX17836.1| GTP-binding protein [Borrelia turicatae 91E135]
          Length = 438

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 11/126 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI ++G  N+GKS+L N LA ++V+IV+ + GTTRD +       G   ++ DTAGIR 
Sbjct: 179 VKIGLIGKPNSGKSTLINFLAGREVSIVSRVAGTTRDFVKARFQRNGKTFELIDTAGIRR 238

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
               ++++E   + R    ++  D++ LL ++         K            I + TK
Sbjct: 239 RARVNELIEHYSVSRALRVIDMVDIVFLLVDVKEDLTAQDKKIAHYATKRGKGIIIVFTK 298

Query: 329 SDLYST 334
            DL  +
Sbjct: 299 WDLVKS 304



 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 73/177 (41%), Gaps = 16/177 (9%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G  +++   ++I+G  N GKS+LFN L   + +I  +I G TRD++     ++ Y   + 
Sbjct: 3   GSKVQDYKSVLIVGRPNVGKSTLFNKLLSSNRSITDEIYGVTRDLIKEICTVDSYKFYLI 62

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNI--DFIFI 325
           D  G     D + +  + +    +++ DLIL + ++N       + I   +      + +
Sbjct: 63  DAGGFTLLRDELSRVVVNKVISLLDSIDLILFVLDVNEILSEDYELIERLRKYSDKIVLV 122

Query: 326 GTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
             K D +      Y+            S+  G+G+  L   +K+ +          +
Sbjct: 123 LNKIDSHHKQALTYEFQNLGFQKSFLVSATHGKGVNSLRIFLKNSVGKLAIDDNVDV 179


>gi|122702225|emb|CAL88303.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD--- 330
            ++ KE         + ++LIL + +  S       K        N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSNLILYVVDGKSIPGDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S+L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167


>gi|122701507|emb|CAL88143.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L  + V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I + +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167


>gi|292806656|gb|ADE42458.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQISDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|293400673|ref|ZP_06644818.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305699|gb|EFE46943.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 301

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ I I+G  NAGKS+L NAL  + +AI T  P TTR+ ++  L  E      +DT 
Sbjct: 3   YKSGF-IAIIGRPNAGKSTLLNALLNEKIAITTPKPQTTRNNISGILTREDAQFIFTDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN----SKKEISFPK----NIDFIFIGT 327
           GI +    + K   +  +  +  AD+   + +      S  E    K    +I    I  
Sbjct: 62  GIHKPKHELGKTLNRNAYTAIAEADVNFWVVDATQSFGSGDEFLLEKIKQSHIPCFLILN 121

Query: 328 KSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL                +T      +S+   + L +L+   K  L    K  P  + 
Sbjct: 122 KIDLLDKEKLIRTLQQWQERHTFAEIFPVSALQKDNLNDLLEVTKGYLEEGPKFFPDEMV 181

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           S     + +++ +R   +   NE+
Sbjct: 182 SDHGEQFQIAEIIREKVLYKTNEE 205


>gi|147677230|ref|YP_001211445.1| GTPase [Pelotomaculum thermopropionicum SI]
 gi|146273327|dbj|BAF59076.1| GTPase [Pelotomaculum thermopropionicum SI]
          Length = 300

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 23/220 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  R+G+ + I+G +N GKS+L N+L  + VAI+++ P TTR+ +   L  E   V   D
Sbjct: 4   KEFRSGF-VAIIGRTNVGKSTLLNSLLGRKVAIMSEKPQTTRNKILCVLTREDAQVVFLD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFI 325
           T G  +    + +  ++     ++  DL+L L E                       + +
Sbjct: 63  TPGFHKPKHKLGEHLVQVALRTLKEVDLVLFLVEAGQPPGPGDHYVIKQFAGLKTPVLLV 122

Query: 326 GTKSDLYST-----YTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL          E+Y           +S+ TGE L  L+  +   L    K  P  
Sbjct: 123 INKIDLVRREELLPLIEQYSGLFGFAEIVPVSALTGENLPRLLEVVVRYLPAGPKYYPED 182

Query: 373 IPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRL 411
           + + +   + +++ +R  +   +  E    + ++ E L+ 
Sbjct: 183 VITDRPESFIMAELIREKVLHLTSQEVPHSVAVVVEELKE 222


>gi|325107065|ref|YP_004268133.1| ribosome-associated GTPase EngA [Planctomyces brasiliensis DSM
           5305]
 gi|324967333|gb|ADY58111.1| ribosome-associated GTPase EngA [Planctomyces brasiliensis DSM
           5305]
          Length = 450

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 209 QGKLGEII--RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           + + GE +      KI I+G  N GKSS  NALA+ +  IV++I GTTRD + +  +L+ 
Sbjct: 171 EAEEGEDLSAEPEMKIAIVGRRNVGKSSFINALAQTERMIVSEIAGTTRDSVDVRFELDD 230

Query: 267 YLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFP 317
                 DT G+R+     + +E  G+ R    +  A+L+L+  +         K+ +   
Sbjct: 231 KAFVAIDTPGVRKKKSLANDIEFYGLVRAQKSIRRANLVLMFFDATKTISKVDKQLVEEI 290

Query: 318 KNI--DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +      IF+  K DL      E +           E LI    S+       +      
Sbjct: 291 EKYYKPSIFVVNKWDLGLEGRMETEKWA--------EYLIKTFASMRHVPIAFITAKDGK 342

Query: 376 HKRHLYHLSQTV 387
           + R L +L+Q V
Sbjct: 343 NIRKLINLAQAV 354



 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 18/161 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+VI+G  N GKSS+FN +A + +++V    G TRD +T          ++ DT GI   
Sbjct: 5   KVVIVGRPNVGKSSIFNWIAGRMISVVDPTAGVTRDRITQLAHHGDRYFELIDTGGIGIV 64

Query: 281 DDIVEKEGIKRTFL-EVENADLILLLKE------------INSKKEISFPKNIDFI-FIG 326
           D     + ++R     +  ADLI+ + +                + I  PK +       
Sbjct: 65  DSDDLSDDVERQIEVALLEADLIMFVMDGLMGVTPLDLEVAEKLRRIDRPKLMVVNKCES 124

Query: 327 TKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
           T++DL    +    +      S       +EL++K+  +L 
Sbjct: 125 TRTDLELPQFYGLADAPLLQTSVKANRNRKELMSKLVEMLP 165


>gi|293376339|ref|ZP_06622576.1| GTP-binding protein Era [Turicibacter sanguinis PC909]
 gi|325843413|ref|ZP_08167971.1| ribosome biogenesis GTPase Era [Turicibacter sp. HGF1]
 gi|292645028|gb|EFF63101.1| GTP-binding protein Era [Turicibacter sanguinis PC909]
 gi|325489335|gb|EGC91709.1| ribosome biogenesis GTPase Era [Turicibacter sp. HGF1]
          Length = 302

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ + I+G  N GKS+  N +  K +AI++D P TTR+ +   +          D
Sbjct: 4   KHFKSGF-VSIIGRPNVGKSTFLNQVLGKKIAIMSDKPQTTRNKIQGVITDADSQTIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFI 325
           T GI +    + K         +   D ++ +     K        I   +N       +
Sbjct: 63  TPGIHKPKHELGKFMTDLAIGTLNEVDAVMFMVNATEKVGKGDRFIIEHLQNVKQPVFLV 122

Query: 326 GTKSDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL          +++ EEY+      IS+ TGE +E LI+ IK  L    +  P  
Sbjct: 123 INKIDLITKEELLTVIASFREEYNFAGIIPISAMTGENVETLISVIKEALPEGPQFYPSD 182

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +S+ +R
Sbjct: 183 YITDHPERFIISELIR 198


>gi|122700827|emb|CAL88002.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKVAQMSDLILYVVDGKSIPSDEDIKLFREVFKINHNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|167630513|ref|YP_001681012.1| GTP-binding protein era [Heliobacterium modesticaldum Ice1]
 gi|226741216|sp|B0TAF1|ERA_HELMI RecName: Full=GTPase Era
 gi|167593253|gb|ABZ85001.1| GTP-binding protein era [Heliobacterium modesticaldum Ice1]
          Length = 299

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 23/220 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E +R+G+ I I+G  N GKS+L N L  K VAI++D P TTR+ +   L+         D
Sbjct: 2   EKLRSGF-ISIIGRPNVGKSTLMNQLIGKKVAIMSDKPQTTRNRIVGVLNAPKGQAIFLD 60

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
           T GI +    + +  +      +   DLIL + + + +         ++          +
Sbjct: 61  TPGIHKPKHKLGEIMVTTARKTLGEVDLILYVVDASEEPGGGEQFISQMLKDIKTPVFLV 120

Query: 326 GTKSDLYSTYTEEYDHLI-------------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D  S                       S+     L+ L + I + L       P  
Sbjct: 121 VNKMDTVSREEGLKKISQYSQMVAWQELIPVSAKEKTNLDRLKDLIFAKLPEGPLYYPAG 180

Query: 373 IPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRL 411
             + +     +++ +R  +  A+  E    + +I E+L+ 
Sbjct: 181 SFTDQPERQLMAEMIREKVLHATREEIPHSVAVIIEHLQE 220


>gi|29347247|ref|NP_810750.1| putative GTP-binding protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339146|gb|AAO76944.1| putative GTP-binding protein, putative GTPase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 405

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 27/181 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V+D PGTT D +   +++ G       DT G
Sbjct: 10  NRLHIALFGKRNSGKSSLINALTGQDTALVSDTPGTTTDSVQKAMEIHGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK----------EINSKKEISF-----PKNID 321
             +  ++  +  I+RT+  VE  D+ LLL           E +  +E+ +      KNI 
Sbjct: 70  FDDEGELGNRR-IERTWKAVEKTDIALLLCAGGGSAEETGEPDFTEELHWLEQLKAKNIP 128

Query: 322 FIFIGTKSDLYSTYT----------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            I +  K+D+                     +S+    G+E +   I   L   F +   
Sbjct: 129 TILLINKADIRKNTASLAIRIKETFGSQPIPVSAKEKTGVELIRQAILEKLPEDFDQQSI 188

Query: 372 S 372
           +
Sbjct: 189 T 189


>gi|15643610|ref|NP_228656.1| GTP-binding protein Era [Thermotoga maritima MSB8]
 gi|8134443|sp|Q9WZV1|ERA_THEMA RecName: Full=GTPase Era
 gi|4981380|gb|AAD35929.1|AE001751_9 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 300

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I++G+ + + G  N GKS+  NA+  + V IV+D P TTR+ +      +   +   DT 
Sbjct: 3   IKSGF-VALAGKPNVGKSTFINAVMGRKVVIVSDKPQTTRNRINCIYTDKDSQIIFVDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           GI +    + +  +K     ++  DL+L + +             +I        I    
Sbjct: 62  GIHKPLHRLGEYMVKAAVQALKGVDLVLFMLDAADGFTKTDEHVAKIVNDSGTKTIIAVN 121

Query: 328 KSDLYSTYTEEY--------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D+      +                H IS+  GEG+ E++ KIK  L    +  P  +
Sbjct: 122 KIDVAGEEKAKAVGELAKSMVENVVSVHYISALKGEGVFEVLEKIKEELPEGPQYYPEDM 181

Query: 374 PSHKRHLYHLSQTVR 388
            + +   +  ++ +R
Sbjct: 182 VTDRPLSFMAAEIIR 196


>gi|238064002|ref|ZP_04608711.1| small GTP-binding protein [Micromonospora sp. ATCC 39149]
 gi|237885813|gb|EEP74641.1| small GTP-binding protein [Micromonospora sp. ATCC 39149]
          Length = 466

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 84/221 (38%), Gaps = 31/221 (14%)

Query: 198 FLKNDISSHISQGKL--GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L + I   + +         R   ++ ++G  N GKSSL N  + ++ A+V  + GTT 
Sbjct: 174 DLLDKILQALPEAPAIVENRPRGPRRVALVGRPNVGKSSLLNRFSGEERAVVDSVAGTTV 233

Query: 256 DVLTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLLKEINSK- 311
           D +   +++ G   ++ DTAG+R+        E     RT   +E A++ ++L + +   
Sbjct: 234 DPVDSLVEIGGETWQLVDTAGLRKRVGKASGTEYYASLRTASAIEAAEVAVVLLDSSEPI 293

Query: 312 -------KEISFPKNIDFIFIGTKSDLYS----------------TYTEEYDHLISSFTG 348
                    +        +    K DL                           +S+ TG
Sbjct: 294 SEQDQRILSMVTEAGRALVIAFNKWDLVDGDRRYYLDKEIERELRRIPWALRINLSAKTG 353

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
             +++L   ++  L++   ++P +  +    L  L Q   +
Sbjct: 354 RAVDKLAPSLRKALASWETRVPTAQLNS--WLTALVQATPH 392



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 19/167 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD +  D    G    + DT G     
Sbjct: 26  VAVVGRPNVGKSTLVNRIIGRRQAVVEDIPGVTRDRVPYDAQWSGRAFTVVDTGGWEPDA 85

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD--- 330
                    +  + V  AD++L + +          +  ++        I +  K+D   
Sbjct: 86  KDRAAAIAAQAEIAVATADVVLFVVDAMVGSTDVDEAAVKMLRRSAKPVILVANKADNAT 145

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                  L+S    E  + +S+  G G  +L++KI   L      + 
Sbjct: 146 IEMESTSLWSLGLGE-PYPVSALHGRGSGDLLDKILQALPEAPAIVE 191


>gi|122702539|emb|CAL88459.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ +   L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLRAL 166


>gi|225630952|ref|YP_002727743.1| GTP-binding protein [Wolbachia sp. wRi]
 gi|225592933|gb|ACN95952.1| GTP-binding protein [Wolbachia sp. wRi]
          Length = 441

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 102/242 (42%), Gaps = 21/242 (8%)

Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH-IR 169
             FS +  E  +  L  +  +  L+ ++ + +R    +  +  L     + +  + +   
Sbjct: 63  TSFSLQVIEQIEFSLSSSNIIFFLVDAKVQNERN---KEFAKWLKRKINKPVILIANKCE 119

Query: 170 SFIEADLDFSEEEDV--QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN----GYKIV 223
           S    ++D+ +  D     + S E    ++ L + ++  I        + N      +I 
Sbjct: 120 SHKSENVDYLQFFDFLGPVYISAEHNLGMVDLYDALAGVIENFNENTELPNNELSRLRIA 179

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-- 281
           I+G  N GKS+  N L  ++  I +  PGTTRD + I  D +G L+ + DTAGIR     
Sbjct: 180 IIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRKANV 239

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKE----INSKK----EISFPKNIDFIFIGTKSDLY 332
            D +E   ++++   ++ + +++L+ +    I  +     E +       I +  K DL 
Sbjct: 240 VDGLESRFVEKSMESIKRSHVVVLMLDSLVGIEQQDLSIGEAAIKGGKGIIVVLNKWDLI 299

Query: 333 ST 334
             
Sbjct: 300 GK 301



 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 17/180 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  NAGKS+LFN L  +  A+V++IPG TRD       +     K+ DT G  +
Sbjct: 2   LKIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKVIDTGGWND 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDL 331
                  + I++    + ++++I  L +   + E        +    N   I I  K + 
Sbjct: 62  QTSFSL-QVIEQIEFSLSSSNIIFFLVDAKVQNERNKEFAKWLKRKINKPVILIANKCES 120

Query: 332 YSTYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           + +   +Y           IS+    G+ +L + +  ++ N  +          R    +
Sbjct: 121 HKSENVDYLQFFDFLGPVYISAEHNLGMVDLYDALAGVIENFNENTELPNNELSRLRIAI 180


>gi|222616294|gb|EEE52426.1| hypothetical protein OsJ_34551 [Oryza sativa Japonica Group]
          Length = 563

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 15/128 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +    +G   K+ DTAGIR  
Sbjct: 273 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRR 332

Query: 281 DDI------VEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIG 326
             +       E   +KR F  +  +D++ L+ E  +          E    +    + + 
Sbjct: 333 AAVASAGSTTETLSVKRAFRAIRRSDVVALVVEAMACITEQDYKIAERIEKEGKACVIVV 392

Query: 327 TKSDLYST 334
            K D    
Sbjct: 393 NKWDTIPN 400


>gi|145295562|ref|YP_001138383.1| GTP-binding protein EngA [Corynebacterium glutamicum R]
 gi|140845482|dbj|BAF54481.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 543

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD ++   D  G+   + DT G     
Sbjct: 107 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYISDWGGHRFWVQDTGGWDPNV 166

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
             +     ++  + +  AD+I+ + +    I     +   K     +  I +  K D  S
Sbjct: 167 KGIHASIAQQAEVAMSTADVIVFVVDTKVGITETDSVMAAKLLRSEVPVILVANKFDSDS 226

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            + +  +           +S+  G G  ++++KI  +   + +     
Sbjct: 227 QWADMAEFYSLGLGDPYPVSAQHGRGGADVLDKILELFPEEPRSKSIV 274



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 86/233 (36%), Gaps = 33/233 (14%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
               S +       + + I     +    + I  G + + ++G  N GKSSL N  A + 
Sbjct: 242 PYPVSAQHGRGGADVLDKILELFPEEPRSKSIVEGPRRVALVGKPNVGKSSLLNKFAGET 301

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENAD 300
            ++V ++ GTT D +   + L+  L K  DTAG+R   +T    E     RT   ++ A+
Sbjct: 302 RSVVDNVAGTTVDPVDSLIQLDQKLWKFVDTAGLRKKVKTASGHEYYASLRTHGAIDAAE 361

Query: 301 LILLLKEINS-----------------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-- 341
           L +LL + +                  K  +      D +    + DL      +  H  
Sbjct: 362 LCVLLIDSSEPITEQDQRVLAMITDAGKALVIAFNKWDLMDEDRRIDLDRELDLQLAHVP 421

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                 IS+ TG  L+ L   +   L N  +++     +       L + +  
Sbjct: 422 WAKRINISAKTGRALQRLEPAMLEALDNWDRRISTGQLNTW-----LREAIAA 469


>gi|292806422|gb|ADE42341.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700799|emb|CAL87988.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA+  +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARGRIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|317452815|emb|CBL87843.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+   D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAR-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|292806444|gb|ADE42352.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKAINLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSAL 166


>gi|300860627|ref|ZP_07106714.1| GTP-binding protein Era [Enterococcus faecalis TUSoD Ef11]
 gi|300849666|gb|EFK77416.1| GTP-binding protein Era [Enterococcus faecalis TUSoD Ef11]
          Length = 300

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +     +    +   DT GI +  
Sbjct: 10  VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGIHKPK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D  L +   + K+        E     N     I  K D   
Sbjct: 70  HRLGDFMVESAYNAMREVDATLFMVSADQKRGKGDGFIIERLKNNNSPVYLIINKIDKVH 129

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y+++ D      IS+  G   E L++ +   +    +  P    +     
Sbjct: 130 PDDLLSIIEDYSKQMDFKEIIPISATEGNNFEHLMDVLVEQMPEGPQYFPDDQITDHPEY 189

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 190 FIVSELIR 197


>gi|122702189|emb|CAL88285.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKVAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSAL 166


>gi|99905853|gb|ABF68621.1| YphC [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKVAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|290968112|ref|ZP_06559657.1| small GTP-binding protein domain protein [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781787|gb|EFD94370.1| small GTP-binding protein domain protein [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 400

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 16/164 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +     GE +  G+     G+ NAGKSSL NA+  +D++IV+D  GTT D ++  ++L  
Sbjct: 3   LQDTPSGERLHIGF----FGYRNAGKSSLVNAVTGQDLSIVSDTEGTTTDPVSKAMELLP 58

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFP 317
              V I DT G+ +T  + EK  + RT   +   D+ +L+ +  +          ++   
Sbjct: 59  LGPVLIIDTPGLDDTGTLGEKR-VARTRRVLNKTDIAVLVADAAAGLRPLDMEVLQLIQQ 117

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLI--SSFTGEGLEELINKIK 359
           K + ++ +  K D+        +H +  S+   +G+ EL  ++ 
Sbjct: 118 KGLPYLIVYNKRDMLENVPPAGEHEMYVSALKKQGIYELKERLA 161


>gi|289423889|ref|ZP_06425682.1| GTP-binding protein Era [Peptostreptococcus anaerobius 653-L]
 gi|289155666|gb|EFD04338.1| GTP-binding protein Era [Peptostreptococcus anaerobius 653-L]
          Length = 299

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 78/195 (40%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+L N +  + +AI++D P TTR+ +      E   +   DT 
Sbjct: 3   YKSGF-VSIVGRPNVGKSTLMNDMVGEKIAIMSDKPQTTRNTIQAVYTDEEAQIVFMDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGT 327
           GI +  + + +  +K      +N D I+ + + +          I   K        +  
Sbjct: 62  GIHKPKNKLGEMMVKSASDAFKNVDSIIFVVDDSRTIGKGDSLIIENLKKTSTPVFLVIN 121

Query: 328 KSDLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D      + ++                 S+  G  ++ LI  IK  L+   K  P  +
Sbjct: 122 KIDKIDNKEDLFEMIRMYDDLNVFKEIIPTSALKGSNIDSLIKVIKRNLNEGPKYFPDYM 181

Query: 374 PSHKRHLYHLSQTVR 388
            + +     +S+ +R
Sbjct: 182 VTDQPERVLVSELIR 196


>gi|291524971|emb|CBK90558.1| GTP-binding protein Era [Eubacterium rectale DSM 17629]
 gi|291529105|emb|CBK94691.1| GTP-binding protein Era [Eubacterium rectale M104/1]
          Length = 303

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + +AI ++ P TTR+ +     D+E   +   DT GI + 
Sbjct: 10  VTIIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVYTDMEKGQIVFLDTPGIHKA 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDL- 331
            + + +  +      +   D++L L E         +  I   K  N   I I  K D  
Sbjct: 70  KNKLGEYMVNVAEKTLNEVDVVLWLVEPTNFIGAGEQHIIEQLKKVNTPVILIINKVDTV 129

Query: 332 --------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                     TY + YD       S+  G+  +++IN I   L    +       + +  
Sbjct: 130 EKEKVLEYIDTYRKVYDFAEIIPTSALRGQNTDDVINSIFKYLPYGPQFYDEDTITDQPE 189

Query: 380 LYHLSQTVRYLEMASLNEK 398
               ++ +R   + +LN++
Sbjct: 190 RAICAEIIREKALHALNDE 208


>gi|122701343|emb|CAL88061.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKVAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|117926861|ref|YP_867478.1| small GTP-binding protein [Magnetococcus sp. MC-1]
 gi|117610617|gb|ABK46072.1| small GTP-binding protein [Magnetococcus sp. MC-1]
          Length = 495

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 66/172 (38%), Gaps = 17/172 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           + Q    + +     + ++G  N GKS+LFN L +   A+V D PG TRD     +    
Sbjct: 4   LPQSWKNQTMSKLPLVALVGRPNVGKSTLFNRLTRTRDALVDDTPGLTRDRQYGIMKRGD 63

Query: 267 YLVKISDTAGIRETDDIVEKEGIK-RTFLEVENADLILLLKEINSKKEIS--------FP 317
               + DT G            I+ +T L +E AD+I+ + + ++               
Sbjct: 64  TPFPMVDTGGFEADPGETMVSLIRGQTILAIEEADIIVFVVDGSTGPLTDDYAIASHLRS 123

Query: 318 KNIDFIFIGTKSDLYSTYTE--------EYDHLISSFTGEGLEELINKIKSI 361
                I    KS+  +            E    ISS  G G+ +L+  ++ +
Sbjct: 124 SGKPVIIAANKSEKKAATASIEFHELGMEPIIPISSAHGLGIGDLLETLEEM 175



 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 14/164 (8%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E  D      ++    +L L  ++     +       +   ++ ++G  NAGKSSL N 
Sbjct: 173 EEMTDAMEGFCRQPEEQLLPL--EVEQENPEVAREPRFKGPLRLAVVGCPNAGKSSLVNR 230

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFL 294
           L  ++  + ++I GTTRD + + + D  G  V + DTAGIR    +   VEK  +     
Sbjct: 231 LVGEERLLASEIAGTTRDSIDVPITDANGETVILVDTAGIRRKSRVSLRVEKFAVIAALK 290

Query: 295 EVENADLILLLKEI-----NSKKEI---SFPKNIDFIFIGTKSD 330
            +E A++ +L+ +      +  K I   +       IF   K D
Sbjct: 291 SMERAEVAILVLDAQRGVTDQDKRIGSYALDAGCGLIFAVNKWD 334


>gi|126732584|ref|ZP_01748381.1| GTP-binding protein EngA [Sagittula stellata E-37]
 gi|126706868|gb|EBA05937.1| GTP-binding protein EngA [Sagittula stellata E-37]
          Length = 488

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 18/153 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+  
Sbjct: 3   FSLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEAKLGDLRFTVIDTAGLEN 62

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             DD +     + T   V+ AD+ L L +  +          EI   +    I    K++
Sbjct: 63  ANDDSLPARMRRLTERAVDMADVCLFLIDARAGLLPDDHVFAEILRKRAKHVIIAANKAE 122

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEEL 354
             +     ++            S+  GEG+ +L
Sbjct: 123 GSAADAGVFEAFELGLGEPLRLSAEHGEGMPDL 155



 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 82/197 (41%), Gaps = 31/197 (15%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +    +I ++G  NAGKS+L N +  +D  +     G TRD +++  +  G  ++I DTA
Sbjct: 196 LARPLQIAVVGRPNAGKSTLINHIIGEDRLLTGPEAGITRDAISLTHEWGGVPMRIFDTA 255

Query: 276 GIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------FIF 324
           G+R    +    EK  +      V+ A+++++L +     E    K  D         + 
Sbjct: 256 GMRRRSKVQEKLEKLSVSDGIRAVKFAEVVVVLLDAAIPFETQDLKIADLAEREGRAVVV 315

Query: 325 IGTKSDLYST-------YTEEYDH-----------LISSFTGEGLEELINKIKSILSNKF 366
              K D+            E+++H            +S+ TG+GL++L   +    +   
Sbjct: 316 AVNKWDIEGEKQEKLKWLREQFEHVLPQLRGAPLVTVSARTGKGLDKLQEAVMKAYTVWN 375

Query: 367 KKLPFSIPSHKRHLYHL 383
           +++     +  R L  +
Sbjct: 376 RRVSTGQLN--RWLEAM 390


>gi|304391252|ref|ZP_07373196.1| ribosome-associated GTPase EngA [Ahrensia sp. R2A130]
 gi|303296608|gb|EFL90964.1| ribosome-associated GTPase EngA [Ahrensia sp. R2A130]
          Length = 478

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 18/164 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + + G  N GKS+LFN L  K +A+V D PG TRD  + +  +     ++ DTAG+ E
Sbjct: 3   FTVAVAGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRRSGNARIGDIKFEVIDTAGLEE 62

Query: 280 TD-DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            D   +E     +T   + +A++ L L +  +           +        I +  K +
Sbjct: 63  ADQASLEGRMRAQTEQAIIDANVTLFLIDARAGVTPMDKSFATMLRRAGKPVILVANKVE 122

Query: 331 -------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNK 365
                   Y  +   +     IS+  GEG+ +L N +   +   
Sbjct: 123 GRKGDDGFYEAFEMGFGEPVPISAEHGEGMADLRNALVEAVGED 166



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 14/179 (7%)

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN---GYKIVIL 225
            + +   L  +  EDV    ++   ++      D+ +  ++    E   +     KI I+
Sbjct: 152 MADLRNALVEAVGEDVAFGKNEPTEDEKEEASFDLEAFEAEEDETEPEYDNTRPLKICIV 211

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV- 284
           G  NAGKS+L N +  +D  +     G TRD +++D + +G  +K+ DTAG+R    +  
Sbjct: 212 GRPNAGKSTLINRMLGEDRLLTGPEAGITRDSISVDWEWQGRSIKLFDTAGMRRKARVQE 271

Query: 285 --EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
             EK  +      ++ A++++++ +     E        +   +    +    K DL  
Sbjct: 272 KLEKLSVHDALRAIQYAEVVVIMFDATIPFEKQDLHIVDLIHREGRAPVLAFNKWDLVP 330


>gi|294790886|ref|ZP_06756044.1| ribosome-associated GTPase EngA [Scardovia inopinata F0304]
 gi|294458783|gb|EFG27136.1| ribosome-associated GTPase EngA [Scardovia inopinata F0304]
          Length = 725

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 9/188 (4%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L  +   +   +D     +         L+       D+       +  E  R   +I
Sbjct: 234 QTLNALIDLVNDAIDQELYREYVAQLDGYDLDQTDQALIDLQDP-DAIQEEEGGRKVGQI 292

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G  N GKS+L N +  +  AIV D PG TRD ++ D +  G   K+ DT G     +
Sbjct: 293 AVVGRPNVGKSTLVNRILGRRAAIVEDTPGVTRDRVSYDANWAGTDFKVIDTGGWESDVE 352

Query: 283 IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYST 334
            +E    ++  + +  +D ++L+ +         +    +             K+D    
Sbjct: 353 GIESAIAEQAQIAMNLSDAVILVVDGTVGPTRTDDRIAALLRSSGKPVTVAVNKADTQEE 412

Query: 335 YTEEYDHL 342
             +  +  
Sbjct: 413 EYQAAEFW 420



 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA+ + ++V D  GTTRD +   + +        DTAGI+  
Sbjct: 466 RVALIGRPNVGKSSLLNELAQDNRSVVNDQAGTTRDPIDQVVTIGSKDWLFIDTAGIKRR 525

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKS 329
                  +     RT   +E ++L L+L + +        K            + +  K 
Sbjct: 526 LHKQTGADYYSSLRTQAAIERSELALVLFDASEPISDQDLKVMSQAVDAGRAIVLVFNKW 585

Query: 330 DLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D    ++                      +S+ TG     L+  +   LS+  +++P  
Sbjct: 586 DKLDEFSRARLERLWETEFNRVTWAQRVNLSAKTGWHTNRLVTAMDKALSSWEQRIPTG 644


>gi|292806574|gb|ADE42417.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ +   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRAL 166


>gi|260428010|ref|ZP_05781989.1| ribosome-associated GTPase EngA [Citreicella sp. SE45]
 gi|260422502|gb|EEX15753.1| ribosome-associated GTPase EngA [Citreicella sp. SE45]
          Length = 487

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 9/120 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  + +A+V D PG TRD+   +  L      + DTAG+ E
Sbjct: 3   FSLAIVGRPNVGKSTLFNRLVGRRLALVDDQPGVTRDLREGEGKLGDLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ ++    + T   V+ AD+ L + +             EI   ++   I    KS+
Sbjct: 63  ATDESLQGRMRRLTERAVDMADVCLFMIDARVGVTPTDEVFAEILRKRSKHVILAANKSE 122



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 76/200 (38%), Gaps = 29/200 (14%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           I         +   +I ++G  NAGKS+L N +  +D  +     G TRD +++ LD +G
Sbjct: 189 IDTALPEITDKKPLQIAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISVRLDWDG 248

Query: 267 YLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------IS 315
             ++I DTAG+R+   I    EK  +      V+ A+++++L +     E        ++
Sbjct: 249 TPMRIFDTAGMRKRAKIQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLA 308

Query: 316 FPKNIDFIFIGTKSD------------------LYSTYTEEYDHLISSFTGEGLEELINK 357
             +    +    K D                  L           +S+ TG GL+ L   
Sbjct: 309 EREGRAVVVAVNKWDVEEHKQEKLRDLKEAFDRLLPQLRGAPLVTVSAKTGRGLDRLNAA 368

Query: 358 IKSILSNKFKKLPFSIPSHK 377
           I        +++     +  
Sbjct: 369 ILKAWEIWNRRVSTGQLNRW 388


>gi|160901780|ref|YP_001567361.1| GTP-binding protein Era [Petrotoga mobilis SJ95]
 gi|160359424|gb|ABX31038.1| GTP-binding protein Era [Petrotoga mobilis SJ95]
          Length = 306

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 75/190 (39%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G  N GKS+L NAL  + V IV+D   TTR+ +   L  + Y +   DT GI +  
Sbjct: 11  VALAGKPNVGKSTLINALLGQKVVIVSDKTQTTRNRVNCILTEDHYQIVFVDTPGIHKPI 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             + +  +      ++  DLIL + +             EI     I  I +  K DL  
Sbjct: 71  RKIGEYMVNIAINALKGVDLILFIIDAKDGLRNSDLRVTEIVDKSKIPTILLVNKVDLVK 130

Query: 334 TYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
              +                    IS+ TG+ L EL   I  +L    +  P  + + K 
Sbjct: 131 DKEKINLMTEKIQSLCSNIVKTIEISALTGKNLSELKQSIIDLLPEGPQYYPEDMITDKP 190

Query: 379 HLYHLSQTVR 388
             + +S+ +R
Sbjct: 191 SRFIISELIR 200


>gi|295396781|ref|ZP_06806916.1| ribosome-associated GTPase EngA [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294970365|gb|EFG46305.1| ribosome-associated GTPase EngA [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 503

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 83/218 (38%), Gaps = 28/218 (12%)

Query: 175 DLDFSEEEDVQNFSSKEVLNDIL-------FLKNDISSHISQG--KLGEIIRNGYK--IV 223
           D DF E     +   + +  + L        L+++    + +    L     +G    + 
Sbjct: 12  DEDFHERFSAIDGDEERLREESLRAGLDDYELEDEDRELLDRSPEDLEAAGTSGPSPILA 71

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           I+G  N GKS+L N +  +  A+V D+PG TRD ++      G  + + DT G       
Sbjct: 72  IVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYTAHWAGRDITLVDTGGWDIDSKG 131

Query: 284 VEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLYSTY 335
           +     ++  + VE AD ++ + +    I S  E    +        I    K D   + 
Sbjct: 132 MASRIAEQAEIAVELADAVVFVLDVHTGITSTDEHIVRMLRKTGKPVIVAANKVDDERSE 191

Query: 336 TEEYDHLI---------SSFTGEGLEELINKIKSILSN 364
              ++            S+  G G+ +L+++   IL  
Sbjct: 192 LAAFELWNLGLGEPSPVSAMHGRGVADLLDRAVEILPE 229



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 96/240 (40%), Gaps = 30/240 (12%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ-GKLGEIIRNG-- 219
           +K+   RS + A   ++      +  S      +  L +     + +   + +++  G  
Sbjct: 183 NKVDDERSELAAFELWNLGLGEPSPVSAMHGRGVADLLDRAVEILPEVSGVDQMVEEGGP 242

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  N GKSSL N L   +  +V ++ GTTRD +   + L     +  DTAGIR+
Sbjct: 243 RRVALIGRPNVGKSSLLNRLVGSERVMVDNVAGTTRDPVDELVVLGDRQWRFVDTAGIRK 302

Query: 280 TDD---IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTK 328
                   +     RT   +E A++ L+L E +   S++++             + +  K
Sbjct: 303 RARQSSGADYYAALRTQTALERAEVALVLLEADQPISEQDLRVINSVIEAGRALVLVFNK 362

Query: 329 SDLYS-----TYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            DL          +E +             IS+ TG   ++L+  + + L     ++P  
Sbjct: 363 WDLLDEDRRLELEKEIEMQLGHVSWAPRVNISAKTGRHADKLVPALDAALKGWDTRIPTG 422


>gi|254818899|ref|ZP_05223900.1| GTP-binding protein EngA [Mycobacterium intracellulare ATCC 13950]
          Length = 466

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD ++ D    G    + DT G     
Sbjct: 32  VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDALWTGRRFVVQDTGGWEPDA 91

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYS 333
             +++   ++  + +  AD ++L+ +          +   I             K D   
Sbjct: 92  KGLQQLVAEQASVAMRTADAVILVVDAVVGATSADEAAARILLRSGKPVFLAANKVDSDK 151

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
              +            H IS+  G G+ +L++++ + L    +  P
Sbjct: 152 AEADAAMLWSLGLGEPHAISAMHGRGVADLLDEVLAALPAVSEVGP 197



 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 110/285 (38%), Gaps = 39/285 (13%)

Query: 119 ENGKIDLLEAESLADLISS------ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172
           E   + +  A+++  ++ +        E   R+ +    G+   L    +D     ++  
Sbjct: 100 EQASVAMRTADAVILVVDAVVGATSADEAAARILLRS--GKPVFLAANKVDS---DKAEA 154

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ-GKLGEIIRNGYKIVILGHSNAG 231
           +A + +S      +  S      +  L +++ + +    ++G       ++ ++G  N G
Sbjct: 155 DAAMLWSLGLGEPHAISAMHGRGVADLLDEVLAALPAVSEVGPKPGGPRRVALVGKPNVG 214

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KSSL N LA    ++V D+ GTT D +   + L   + +  DTAG+R         E   
Sbjct: 215 KSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIQLGDRVWRFVDTAGLRRKVGQASGHEFYA 274

Query: 289 IKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY- 339
             RT   ++ A+++++L + +            +        +    K DL      E  
Sbjct: 275 SVRTHSAIDAAEVVIVLIDASDPLTEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRELL 334

Query: 340 ---------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
                             IS+ TG  +++L+  +++ L++   ++
Sbjct: 335 EREIDRELVQLRWAPRVNISAKTGRAVQKLVPAMETSLASWDARI 379


>gi|4467665|emb|CAB37784.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKVAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGVPKSFNISVSHNRGISALIDAVLDALN 167


>gi|258513539|ref|YP_003189761.1| small GTP-binding protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257777244|gb|ACV61138.1| small GTP-binding protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 408

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 17/163 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  NAGKSSL NAL ++++AIV+++ GTT D +   +++     V + DTAG+ 
Sbjct: 10  LHIALFGRRNAGKSSLINALTRQNLAIVSNVAGTTTDPVYKSMEILPIGPVVLIDTAGLD 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD 330
           +  ++ +K  + ++   +   DL+LL+ ++            E +  K +  I +  K D
Sbjct: 70  DEGELGQKR-VAKSMAVLAKTDLVLLVADVQKGLGKTELELIETARKKELPVIGVANKID 128

Query: 331 LYST-------YTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
           L            +     +S+ TG+G+ EL   +  +   ++
Sbjct: 129 LLPQPEEISFPLPDMTWVKVSALTGKGINELKQAMVKLAPKEW 171


>gi|317496984|ref|ZP_07955314.1| small GTP-binding domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316895996|gb|EFV18148.1| small GTP-binding domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 402

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           +   I + G  NAGKSS+ NA+  +++AIV+D+ GTT D +   ++L     V + DT G
Sbjct: 10  DRIHIALFGKRNAGKSSVINAMTNQELAIVSDVKGTTTDPVYKAMELLPLGPVVMIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNIDFIF--IGTK 328
           + +  ++ EK  +K+    +  AD+ L++ +  +      +  I   ++    +  +  K
Sbjct: 70  LDDEGELGEKR-VKKAKEVLGKADIALVIMDATAGMTEFEEDMIRLIEDRKIPYLKVYNK 128

Query: 329 SDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            DL     + E+    +S+   +G+ EL  +I  ++   
Sbjct: 129 MDLSNAQEWKEDKACFVSAKDKKGIWELKEEIGKLVPTD 167


>gi|297617800|ref|YP_003702959.1| GTP-binding protein Era [Syntrophothermus lipocalidus DSM 12680]
 gi|297145637|gb|ADI02394.1| GTP-binding protein Era [Syntrophothermus lipocalidus DSM 12680]
          Length = 294

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 72/197 (36%), Gaps = 21/197 (10%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  N GKS+  N +  + VAIV++ P TTR+ +      E   +   DT GI     
Sbjct: 9   SIVGRPNVGKSTFLNTVIGQKVAIVSEKPQTTRNRIQGIYTCEQGQIIFIDTPGIHRPRH 68

Query: 283 IVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNI--DFIFIGTKSDL--- 331
            + +  ++        AD++L +           ++ I F          +  K DL   
Sbjct: 69  KLGEYMVRTAHATAREADVVLYMVSAKDGMEKGDEEIIEFLTKTSAPVFLVVNKIDLVDQ 128

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                     +S +       IS+  G  +  LI KI   L       P    + +   +
Sbjct: 129 DEVSRCIGSFHSRFRFAETWPISAIMGTNVHALIRKILDYLPVGPYYYPPDQVTDQPERF 188

Query: 382 HLSQTVRYLEMASLNEK 398
            +++ +R   +    E+
Sbjct: 189 IVAELIREKALYFTREE 205


>gi|122702311|emb|CAL88346.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122702719|emb|CAL88549.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  TLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|254796894|ref|YP_003081731.1| putative GTP-binding protein EngA [Neorickettsia risticii str.
           Illinois]
 gi|254590130|gb|ACT69492.1| putative GTP-binding protein EngA [Neorickettsia risticii str.
           Illinois]
          Length = 480

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 12/165 (7%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +++ I   +   +     +   ++ ILG  N GKSSL N    KD  +V  I GTTRD +
Sbjct: 160 IESFIPEQLDIPENDSEKQRRIRVSILGQPNVGKSSLMNKFIGKDRVLVLPIAGTTRDPI 219

Query: 259 TIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN----SK 311
           + +   +    ++ DTAG+R+     D +EK    R       +D+++ + +I+     +
Sbjct: 220 SDEFQWKCTTFELVDTAGLRKKQRVTDGLEKICNSRALRTSAESDVVIFMCDISNFTLER 279

Query: 312 KEISFPKNI-----DFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           ++      I       I +G K D  +    E      S   + L
Sbjct: 280 QDFLLMNKILEQGKPMILVGNKKDAVNATELESIKDFISLQAQKL 324



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 18/177 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +++ +++ I+G +N GKS+LFN +A++  +I  D  G TRDV+   + L EG    + DT
Sbjct: 8   MQSVFRVSIVGKANVGKSTLFNKMAREKRSITMDRKGVTRDVVVRKISLNEGKSFLLLDT 67

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKE--INSKKEI------SFPKNIDFIFIG 326
           AG     +    E ++RT   ++ +D+IL + +  I+S+  +          N   + + 
Sbjct: 68  AGF----NPQHPETVERTEYAIKESDMILFVIDNKIDSEDMLFASWLRRNAGNSKIVLVC 123

Query: 327 TKSDLY-----STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
            KSD       S +  +   LIS+    GL ELI+ I+S +  +           +R
Sbjct: 124 NKSDRKDRDDCSLFGFQNVFLISAEHSLGLSELISYIESFIPEQLDIPENDSEKQRR 180


>gi|157737421|ref|YP_001490104.1| GTP-binding protein EngA [Arcobacter butzleri RM4018]
 gi|157699275|gb|ABV67435.1| GTP-binding protein [Arcobacter butzleri RM4018]
          Length = 485

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 25/184 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI  +   + I+G  N GKSS+ NA+   + ++V+ I GTT D +    + +   +   D
Sbjct: 212 EIDDSKINVAIIGRVNVGKSSVLNAIVGAERSVVSPIAGTTIDPVDESFEYKEKQITFVD 271

Query: 274 TAGIRETD--DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFI 323
           TAG+R     + +EK  + RT   +E A++ L++ + + +      K         +  I
Sbjct: 272 TAGLRRRGSIEGIEKYALMRTKEMLEKANMALVVLDASRELTDLDEKIAGLVDEYGLGTI 331

Query: 324 FIGTKS----DLYSTYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKK 368
            +  K     D +    EE               +S+ TG  +E L +KI  I  N  ++
Sbjct: 332 IVLNKWDENMDTFQKIEEEIRRRFRFLSYAPIIAVSAKTGRSIERLKDKIIEIFDNYTQR 391

Query: 369 LPFS 372
           +P S
Sbjct: 392 IPTS 395



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 19/168 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSLFN +A K +AIV+D+ GTTRD+   ++++   +  + DT GI +T
Sbjct: 7   KIALIGQPNVGKSSLFNRIANKRIAIVSDMAGTTRDIRKHEIEILDRVGLLVDTGGIDDT 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLY 332
           +D +     ++     + AD+IL + +  +  +    +          +   +  K D  
Sbjct: 67  NDAIFSNVKRKAIETAKEADIILFMVDGKNIPDDKDKELFYELQRLGKELALVVNKIDND 126

Query: 333 STYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKL 369
                 ++             IS     G + L   I   L    + +
Sbjct: 127 KELERLWEFFEFGIGDENLFGISVSHNRGTKLLFEWIYKHLPVNLETV 174


>gi|122700927|emb|CAL88051.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  TLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ +   L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRALN 167


>gi|67459566|ref|YP_247190.1| GTP-binding protein Era [Rickettsia felis URRWXCal2]
 gi|75536034|sp|Q4UKB0|ERA_RICFE RecName: Full=GTPase Era
 gi|67005099|gb|AAY62025.1| GTP-binding protein Era [Rickettsia felis URRWXCal2]
          Length = 293

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 20/159 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
               I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E
Sbjct: 7   ISFCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFE 66

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE--------INSKKEISFPKNIDFIFIGTKSDL 331
               +EK  ++  +  + +ADL++L+ +        ++   +     NI  IF+  K D+
Sbjct: 67  PKGTLEKAMVRCAWSSLHSADLVMLIIDSLKPFDDVMHDILDKLRSLNIVPIFLLNKIDI 126

Query: 332 YSTYTEEYD------------HLISSFTGEGLEELINKI 358
            S Y ++                IS+ +G+ ++ L+  I
Sbjct: 127 ESKYLDDIKAFLTENHPDSLLFPISALSGKNIDGLLEYI 165


>gi|122702717|emb|CAL88548.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700895|emb|CAL88036.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSALN 167


>gi|94986558|ref|YP_594491.1| GTP-binding protein EngA [Lawsonia intracellularis PHE/MN1-00]
 gi|166225821|sp|Q1MS56|DER_LAWIP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|94730807|emb|CAJ54169.1| predicted GTPases [Lawsonia intracellularis PHE/MN1-00]
          Length = 453

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/292 (19%), Positives = 119/292 (40%), Gaps = 35/292 (11%)

Query: 118 FENGKIDLLEAESLADLISSET---EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           F+  ++ + E++++  ++++          L++     +        ++K+  I    + 
Sbjct: 84  FQQVQLAIEESQAICLIVNARDGLLPFDEHLAL--FLRKTGKPILLAVNKVDGIEKEDQI 141

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE---IIRNGYKIVILGHSNAG 231
             +F          S E  ++I  L+N++S  +   +  +     +   K+ I+G  NAG
Sbjct: 142 VAEFHILGLPMIAVSAEHGHNIRQLENELSLLLPNNENIKDQSTAQAALKLAIIGRPNAG 201

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEG 288
           KSS+ NA+  K+  IV++I GTTRD + I            DTAGIR   +  D VE+  
Sbjct: 202 KSSIINAIIGKNKLIVSNIAGTTRDSIDIPFIFNKTQYLFVDTAGIRRRTKITDPVERFS 261

Query: 289 IKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST------ 334
           +  +      A++ L + +             ++   + I FI +  K+DL +       
Sbjct: 262 VNASIKSATKANITLYVIDATEGITAQDKRLLDLLDTRKIPFILLINKTDLIAKKQKTLL 321

Query: 335 ---YTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
              + EE            S+ T  GL+++I   + +      ++   + + 
Sbjct: 322 SKSFKEELQFCPHIPILMVSAVTSSGLDQIIAMAEQVYLECSTRINTGVLNR 373



 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 76/210 (36%), Gaps = 41/210 (19%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAG--- 276
           KI ++G  N GKS+LFN L +K+ AI  D PG TRD +   +   G+    + DT G   
Sbjct: 4   KIALVGRPNVGKSTLFNRLIRKNRAITHDRPGVTRDRMEGLVQSIGHPSFILIDTGGVIL 63

Query: 277 --------IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNI 320
                   I +     EK+  ++  L +E +  I L+           + ++        
Sbjct: 64  DSHYSTINIIDELHGFEKDIFQQVQLAIEESQAICLIVNARDGLLPFDEHLALFLRKTGK 123

Query: 321 DFIFIGTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
             +    K D      +               S+  G  + +L N++  +L         
Sbjct: 124 PILLAVNKVDGIEKEDQIVAEFHILGLPMIAVSAEHGHNIRQLENELSLLL--------- 174

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
               +  ++   S     L++A +   + G
Sbjct: 175 ---PNNENIKDQSTAQAALKLAIIGRPNAG 201


>gi|78357319|ref|YP_388768.1| small GTP-binding protein domain-containing protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219724|gb|ABB39073.1| iron-only hydrogenase maturation protein HydF [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 400

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 22/183 (12%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +   GE +     I ++G  NAGKSSL NALA + +AIV+D+PGTT D +    +L   
Sbjct: 3   DKAPRGERL----VITLVGRRNAGKSSLINALAGQQIAIVSDVPGTTTDPVAKPYELLPL 58

Query: 268 -LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--- 323
             V   DTAG+ ++ ++ E   ++     +   D+ LL+      +E       D     
Sbjct: 59  GPVTFYDTAGLDDSGELGEMR-VRSARKVLARTDVALLVVSEAGMEEAEKRMLADLQAME 117

Query: 324 ----FIGTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLP 370
                +  K D+     E+              SS   +G+ EL + I  ++  + K  P
Sbjct: 118 ISALVVFNKQDIADVRPEDVRFCHEAGVRHVQVSSVAQKGISELKSAIVEMVPEELKADP 177

Query: 371 FSI 373
             +
Sbjct: 178 VLV 180


>gi|29376905|ref|NP_816059.1| GTP-binding protein Era [Enterococcus faecalis V583]
 gi|227519872|ref|ZP_03949921.1| GTP-binding protein Era [Enterococcus faecalis TX0104]
 gi|227553941|ref|ZP_03983988.1| GTP-binding protein Era [Enterococcus faecalis HH22]
 gi|229549418|ref|ZP_04438143.1| GTP-binding protein Era [Enterococcus faecalis ATCC 29200]
 gi|255975189|ref|ZP_05425775.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecalis T2]
 gi|256617033|ref|ZP_05473879.1| GTP-binding protein Era [Enterococcus faecalis ATCC 4200]
 gi|256763103|ref|ZP_05503683.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecalis T3]
 gi|256853771|ref|ZP_05559136.1| GTP-binding protein Era [Enterococcus faecalis T8]
 gi|256956687|ref|ZP_05560858.1| GTP-binding protein Era [Enterococcus faecalis DS5]
 gi|256961296|ref|ZP_05565467.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecalis Merz96]
 gi|256963577|ref|ZP_05567748.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecalis HIP11704]
 gi|257079642|ref|ZP_05574003.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecalis JH1]
 gi|257082012|ref|ZP_05576373.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecalis E1Sol]
 gi|257084563|ref|ZP_05578924.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecalis Fly1]
 gi|257087441|ref|ZP_05581802.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecalis D6]
 gi|257090600|ref|ZP_05584961.1| small GTP-binding protein [Enterococcus faecalis CH188]
 gi|257416648|ref|ZP_05593642.1| GTP-binding protein Era [Enterococcus faecalis AR01/DG]
 gi|257419864|ref|ZP_05596858.1| small GTP-binding protein Era [Enterococcus faecalis T11]
 gi|257421948|ref|ZP_05598938.1| GTP-binding protein Era [Enterococcus faecalis X98]
 gi|293383580|ref|ZP_06629490.1| GTP-binding protein Era [Enterococcus faecalis R712]
 gi|293387307|ref|ZP_06631863.1| GTP-binding protein Era [Enterococcus faecalis S613]
 gi|294780922|ref|ZP_06746276.1| GTP-binding protein Era [Enterococcus faecalis PC1.1]
 gi|307270833|ref|ZP_07552121.1| GTP-binding protein Era [Enterococcus faecalis TX4248]
 gi|307271516|ref|ZP_07552788.1| GTP-binding protein Era [Enterococcus faecalis TX0855]
 gi|307277156|ref|ZP_07558260.1| GTP-binding protein Era [Enterococcus faecalis TX2134]
 gi|307285808|ref|ZP_07565942.1| GTP-binding protein Era [Enterococcus faecalis TX0860]
 gi|307287711|ref|ZP_07567754.1| GTP-binding protein Era [Enterococcus faecalis TX0109]
 gi|307290538|ref|ZP_07570450.1| GTP-binding protein Era [Enterococcus faecalis TX0411]
 gi|312899839|ref|ZP_07759158.1| GTP-binding protein Era [Enterococcus faecalis TX0470]
 gi|312905132|ref|ZP_07764253.1| GTP-binding protein Era [Enterococcus faecalis TX0635]
 gi|312906130|ref|ZP_07765142.1| GTP-binding protein Era [Enterococcus faecalis DAPTO 512]
 gi|312909476|ref|ZP_07768331.1| GTP-binding protein Era [Enterococcus faecalis DAPTO 516]
 gi|312953489|ref|ZP_07772329.1| GTP-binding protein Era [Enterococcus faecalis TX0102]
 gi|81436511|sp|Q831T9|ERA_ENTFA RecName: Full=GTPase Era
 gi|29344370|gb|AAO82129.1| GTP-binding protein Era [Enterococcus faecalis V583]
 gi|227072666|gb|EEI10629.1| GTP-binding protein Era [Enterococcus faecalis TX0104]
 gi|227176927|gb|EEI57899.1| GTP-binding protein Era [Enterococcus faecalis HH22]
 gi|229305655|gb|EEN71651.1| GTP-binding protein Era [Enterococcus faecalis ATCC 29200]
 gi|255968061|gb|EET98683.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecalis T2]
 gi|256596560|gb|EEU15736.1| GTP-binding protein Era [Enterococcus faecalis ATCC 4200]
 gi|256684354|gb|EEU24049.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecalis T3]
 gi|256710714|gb|EEU25757.1| GTP-binding protein Era [Enterococcus faecalis T8]
 gi|256947183|gb|EEU63815.1| GTP-binding protein Era [Enterococcus faecalis DS5]
 gi|256951792|gb|EEU68424.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecalis Merz96]
 gi|256954073|gb|EEU70705.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecalis HIP11704]
 gi|256987672|gb|EEU74974.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecalis JH1]
 gi|256990042|gb|EEU77344.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecalis E1Sol]
 gi|256992593|gb|EEU79895.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecalis Fly1]
 gi|256995471|gb|EEU82773.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecalis D6]
 gi|256999412|gb|EEU85932.1| small GTP-binding protein [Enterococcus faecalis CH188]
 gi|257158476|gb|EEU88436.1| GTP-binding protein Era [Enterococcus faecalis ARO1/DG]
 gi|257161692|gb|EEU91652.1| small GTP-binding protein Era [Enterococcus faecalis T11]
 gi|257163772|gb|EEU93732.1| GTP-binding protein Era [Enterococcus faecalis X98]
 gi|291079092|gb|EFE16456.1| GTP-binding protein Era [Enterococcus faecalis R712]
 gi|291083205|gb|EFE20168.1| GTP-binding protein Era [Enterococcus faecalis S613]
 gi|294452048|gb|EFG20496.1| GTP-binding protein Era [Enterococcus faecalis PC1.1]
 gi|295113464|emb|CBL32101.1| GTP-binding protein Era [Enterococcus sp. 7L76]
 gi|306498393|gb|EFM67898.1| GTP-binding protein Era [Enterococcus faecalis TX0411]
 gi|306501449|gb|EFM70752.1| GTP-binding protein Era [Enterococcus faecalis TX0109]
 gi|306502569|gb|EFM71836.1| GTP-binding protein Era [Enterococcus faecalis TX0860]
 gi|306506086|gb|EFM75252.1| GTP-binding protein Era [Enterococcus faecalis TX2134]
 gi|306511788|gb|EFM80786.1| GTP-binding protein Era [Enterococcus faecalis TX0855]
 gi|306512834|gb|EFM81478.1| GTP-binding protein Era [Enterococcus faecalis TX4248]
 gi|310627776|gb|EFQ11059.1| GTP-binding protein Era [Enterococcus faecalis DAPTO 512]
 gi|310628698|gb|EFQ11981.1| GTP-binding protein Era [Enterococcus faecalis TX0102]
 gi|310631522|gb|EFQ14805.1| GTP-binding protein Era [Enterococcus faecalis TX0635]
 gi|311290149|gb|EFQ68705.1| GTP-binding protein Era [Enterococcus faecalis DAPTO 516]
 gi|311293089|gb|EFQ71645.1| GTP-binding protein Era [Enterococcus faecalis TX0470]
 gi|315025403|gb|EFT37335.1| GTP-binding protein Era [Enterococcus faecalis TX2137]
 gi|315030211|gb|EFT42143.1| GTP-binding protein Era [Enterococcus faecalis TX4000]
 gi|315032903|gb|EFT44835.1| GTP-binding protein Era [Enterococcus faecalis TX0017]
 gi|315035613|gb|EFT47545.1| GTP-binding protein Era [Enterococcus faecalis TX0027]
 gi|315144805|gb|EFT88821.1| GTP-binding protein Era [Enterococcus faecalis TX2141]
 gi|315146685|gb|EFT90701.1| GTP-binding protein Era [Enterococcus faecalis TX4244]
 gi|315150151|gb|EFT94167.1| GTP-binding protein Era [Enterococcus faecalis TX0012]
 gi|315152156|gb|EFT96172.1| GTP-binding protein Era [Enterococcus faecalis TX0031]
 gi|315155343|gb|EFT99359.1| GTP-binding protein Era [Enterococcus faecalis TX0043]
 gi|315159081|gb|EFU03098.1| GTP-binding protein Era [Enterococcus faecalis TX0312]
 gi|315161673|gb|EFU05690.1| GTP-binding protein Era [Enterococcus faecalis TX0645]
 gi|315164810|gb|EFU08827.1| GTP-binding protein Era [Enterococcus faecalis TX1302]
 gi|315166396|gb|EFU10413.1| GTP-binding protein Era [Enterococcus faecalis TX1341]
 gi|315170292|gb|EFU14309.1| GTP-binding protein Era [Enterococcus faecalis TX1342]
 gi|315173673|gb|EFU17690.1| GTP-binding protein Era [Enterococcus faecalis TX1346]
 gi|315574358|gb|EFU86549.1| GTP-binding protein Era [Enterococcus faecalis TX0309B]
 gi|315579040|gb|EFU91231.1| GTP-binding protein Era [Enterococcus faecalis TX0630]
 gi|315580167|gb|EFU92358.1| GTP-binding protein Era [Enterococcus faecalis TX0309A]
 gi|323481399|gb|ADX80838.1| GTP-binding protein Era [Enterococcus faecalis 62]
 gi|327535695|gb|AEA94529.1| GTP-binding protein Era [Enterococcus faecalis OG1RF]
          Length = 300

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +     +    +   DT GI +  
Sbjct: 10  VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGIHKPK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D  L +   + K+        E     N     I  K D   
Sbjct: 70  HRLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYLIINKIDKVH 129

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y+++ D      IS+  G   E L++ +   +    +  P    +     
Sbjct: 130 PDDLLSIIEDYSKQMDFKEIIPISATEGNNFEHLMDVLVEQMPEGPQYFPDDQITDHPEY 189

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 190 FIVSELIR 197


>gi|226328001|ref|ZP_03803519.1| hypothetical protein PROPEN_01892 [Proteus penneri ATCC 35198]
 gi|225203705|gb|EEG86059.1| hypothetical protein PROPEN_01892 [Proteus penneri ATCC 35198]
          Length = 119

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 52/107 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V D PG TRD      +LEG    I DT GI   +
Sbjct: 10  IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEGEEFIIIDTGGIDGAE 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK 328
           + VE     ++   ++ AD++L L +  +    +     +   +  K
Sbjct: 70  EGVETHMASQSLQAIQEADIVLFLVDARAGLMPADQGIANTFVVSRK 116


>gi|85707619|ref|ZP_01038685.1| predicted GTPase [Erythrobacter sp. NAP1]
 gi|85689153|gb|EAQ29156.1| predicted GTPase [Erythrobacter sp. NAP1]
          Length = 475

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 18/152 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +++I+G  N GKS+LFN L  K +A+V D PG TRD    D ++ G    I DTAG  + 
Sbjct: 4   QVIIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRMGDAEIAGLKFTIVDTAGWEDE 63

Query: 281 DDIVE-KEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD- 330
           D++       K+T   +E AD  L + +  +      +EI+      ++  + +  K++ 
Sbjct: 64  DELTLPGRMRKQTEASLEGADAALFVVDARAGLTPLDEEIARYLREHDVPIVLVANKAEG 123

Query: 331 ------LYSTYTEEY--DHLISSFTGEGLEEL 354
                 +   Y+  +     +S+  GEG+ +L
Sbjct: 124 SAGESGVLEAYSLGFGEPLAVSAEHGEGIADL 155



 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 83/193 (43%), Gaps = 35/193 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL------EGYLVKISD 273
            K+ I+G  NAGKS+L N L  +D  +     G TRD + ID +       E   +++ D
Sbjct: 189 LKLAIVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIAIDWEWTDPKSGETREIRLID 248

Query: 274 TAGIRETDDIVEKE---GIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDF 322
           TAG+R+  ++VEK     +      V+ A++++LL +     E        ++  +    
Sbjct: 249 TAGMRKKRNVVEKIEKLSVADARRAVDFAEVVVLLLDATQGLEHQDLKIASLALEEGRAL 308

Query: 323 IFIGTKSDLYSTYTEEYDHLI------------------SSFTGEGLEELINKIKSILSN 364
           +    K D+    +  ++ +                   S+ TG+GL+ ++    ++  +
Sbjct: 309 MVAINKWDVAEEASSLFNGIKQALHDGLAQVRGLPVLSVSAKTGKGLDAMLGAAFTLRES 368

Query: 365 KFKKLPFSIPSHK 377
             K++P +  +  
Sbjct: 369 WSKRVPTAALNRW 381


>gi|319651594|ref|ZP_08005721.1| era protein [Bacillus sp. 2_A_57_CT2]
 gi|317396661|gb|EFV77372.1| era protein [Bacillus sp. 2_A_57_CT2]
          Length = 306

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 81/209 (38%), Gaps = 23/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+  N +  + +AI++D P TTR+ +   L          DT GI +  
Sbjct: 15  ISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNDAQFIFIDTPGIHKPK 74

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS----KKEISFPK----NIDFIFIGTKSD--- 330
             +    +K     ++  D+IL +          +E    K          +  K D   
Sbjct: 75  HKLGDFMMKVAQNTLKEVDVILFMVNAQEGFGRGEEFILEKFQSVRTPIFLVINKIDQVH 134

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +  +Y E+Y+      IS+  G  +E L+ +IK  +    +  P    +     
Sbjct: 135 PDELLKIIESYKEKYEFSEIIPISALEGNNVETLLGQIKEYIPEGPQFYPADQVTDHPER 194

Query: 381 YHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
           + +S+ +R  +   L  ++    + +  +
Sbjct: 195 FIVSELIRE-KALHLTREEIPHSLAVTID 222


>gi|255011303|ref|ZP_05283429.1| putative GTPase [Bacteroides fragilis 3_1_12]
 gi|313149114|ref|ZP_07811307.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137881|gb|EFR55241.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 394

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 18/174 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           + N   I + G  N+GKSSL NAL  ++ A+V++I GTT D +   +++ G       DT
Sbjct: 6   LSNRLHIALFGKRNSGKSSLINALTNQNAALVSNIAGTTTDPVYQPMEIHGIGPCVFIDT 65

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKK---EISFPKNIDFIFIGTK 328
           AG  +  ++     I+RT   V+  D+ L++    E++ +K   E+   K I ++ I  K
Sbjct: 66  AGFDDNGELGSLR-IERTVQAVDKTDIALMVCCDTELSEEKRWIELLKEKGIPYLLILNK 124

Query: 329 SDLYSTYTE----------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +DL     E          E   ++S+    G++ +   I   L     +    
Sbjct: 125 ADLSENPKETANELERQTGERPLIVSAKEKTGMDSICRSILQKLPELGGQPDIV 178


>gi|242255884|gb|ACS88926.1| GTPase [Helicobacter pylori]
 gi|242255886|gb|ACS88927.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + +
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-N 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + + L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAVLNAL 166


>gi|222528496|ref|YP_002572378.1| small GTP-binding protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222455343|gb|ACM59605.1| small GTP-binding protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 403

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 19/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSSL NA+  + +AIV+D+PGTT D +   +++     V + DTAG
Sbjct: 8   ERLHIAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKSMEILPLGPVVLIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADL-ILLLKEINS----KKEISF--PKNIDFIFIGTKS 329
           I + + I+ K  I++T   +   D+ IL++ +I+     K+ +     K +  I +  K 
Sbjct: 68  IDD-EGILGKLRIEKTLEVLNKTDIAILVVSDIDDFTYEKQLVKLFDEKKVPRIGVLNKI 126

Query: 330 DLYSTYTEEYDHLISSF----------TGEGLEELINKIKSILSNKFKKL 369
           D    Y E+   L SS           T +G++EL N +  ++ +  + L
Sbjct: 127 DKDPNYKEKLSFLQSSLGMPFLAVSCATLKGIDELKNALSKLVPDVGEDL 176


>gi|26006737|sp|Q9EWW8|DER_STRCO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
          Length = 465

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 77/204 (37%), Gaps = 23/204 (11%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             D+   I +   G +      + ++G  N GKS+L N +  +  A+V D PG TRD +T
Sbjct: 11  IEDVEGAIEEAGHGPL----PVLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVT 66

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSK 311
            + +  G   K+ DT G  +    ++     +    +E AD ++ + +          + 
Sbjct: 67  YEAEWAGRRFKVVDTGGWEQDVLGIDASVAAQAEYAIEAADAVVFVVDAKVGATDTDEAV 126

Query: 312 KEISFPKNIDFIFIGTKSD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
             +        +    K D          L+S    E    +S+  G G  ++++++   
Sbjct: 127 VRLLRKAGKPVVLCANKVDGPSGEADASYLWSLGLGE-PQPVSALHGRGTGDMLDRVLEA 185

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQ 385
           L     +   +     R +  + +
Sbjct: 186 LPEAPAQTFGTAVGGPRRIALIGR 209



 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N +A +D  +V ++ GTTRD +   ++L G   K  DTAGIR+ 
Sbjct: 203 RIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRKR 262

Query: 281 DDIVE---KEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKS 329
             + +        RT   VE A++ ++L + +    +        +       +    K 
Sbjct: 263 VHLQQGADYYASLRTAAAVEKAEVAVILVDASESISVQDQRIVTMAVEAGRAIVVAYNKW 322

Query: 330 D---------LYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D         L      E           +S+ TG  +E+L+  I++ L+    ++P  
Sbjct: 323 DTLDEERRYYLEREIETELGQVAWAPRVNVSAQTGRHMEKLVPAIETALAGWETRVPTG 381


>gi|296532289|ref|ZP_06895028.1| ribosome-associated GTPase EngA [Roseomonas cervicalis ATCC 49957]
 gi|296267365|gb|EFH13251.1| ribosome-associated GTPase EngA [Roseomonas cervicalis ATCC 49957]
          Length = 445

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKS+LFN LA + +AIV D PG TRD    +  L G  V + DTAG+ E 
Sbjct: 4   RIAIIGRPNVGKSTLFNRLAGRKLAIVDDTPGVTRDRKETEARLGGRAVLLLDTAGLEEA 63

Query: 281 -DDIVEKEGIKRTFLEVENADLILLLKEINS 310
             D V       +   + +ADL+L + +  +
Sbjct: 64  PPDTVAGRMRASSEAAIRDADLVLFVVDARA 94



 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 80/197 (40%), Gaps = 30/197 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
            ++ I+G  NAGKS+L NAL  ++  I    PG TRD + ++   E G  V++ DTAG+R
Sbjct: 178 LRLAIVGRPNAGKSTLLNALLGEERMITGPEPGLTRDAVAVEWTDETGGKVRLVDTAGMR 237

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGT 327
           +   I+   E+  +  T   ++ A+  +L+ + N    ++++   +         I    
Sbjct: 238 KKARIIEGLEQMSVAATIAALKEAEAAILVLDANLGMDEQDLRIARLAEREGRAVIIAFN 297

Query: 328 KSDLY------------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           K D                    +         +S+ TG G+E L+  ++  +    +++
Sbjct: 298 KWDAVEDRAACRRKLDDVLTASLAQLKGVEVVTLSAMTGRGVERLMPAVRQTVERWNRRI 357

Query: 370 PFSIPSHKRHLYHLSQT 386
           P    +           
Sbjct: 358 PTGELNRWFEAALARHA 374


>gi|122700903|emb|CAL88040.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI  + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIGAVLNALN 167


>gi|118580146|ref|YP_901396.1| GTP-binding protein Era [Pelobacter propionicus DSM 2379]
 gi|259645964|sp|A1APR8|ERA_PELPD RecName: Full=GTPase Era
 gi|118502856|gb|ABK99338.1| GTP-binding protein Era [Pelobacter propionicus DSM 2379]
          Length = 296

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 74/187 (39%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI +D P TTR+ +    ++    +   DT GI    
Sbjct: 11  VSIVGRPNVGKSTLLNRIIGEKIAITSDKPQTTRNRIQGIHNIANGQIVFIDTPGIHACH 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN------IDFIFIGTKSDLYST- 334
             + K  +      +   DL+LL+ +     +    ++         + +  K DL +  
Sbjct: 71  SRLNKGMVDAALAALRGVDLLLLVVDAGGAIDDRLVRDVLGGTGTPVMLVLNKVDLLADK 130

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                        Y       IS+ +GEG++ LI  +   L       P  I +     +
Sbjct: 131 RVLLERMAAWSQLYPFREILPISAGSGEGVDGLIETVCGYLPEGQPLFPDDILTDLPERF 190

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 191 IVAEMIR 197


>gi|242255962|gb|ACS88965.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKAINLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINSNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|294101756|ref|YP_003553614.1| GTP-binding protein Era [Aminobacterium colombiense DSM 12261]
 gi|293616736|gb|ADE56890.1| GTP-binding protein Era [Aminobacterium colombiense DSM 12261]
          Length = 308

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 24/201 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +    V+IV++ P TTR+ +    +     +  +DT GI    
Sbjct: 13  VPIVGRPNVGKSSLLNNILAYKVSIVSEKPQTTRNAIHGIYNEPEMQIVFTDTPGIHRPR 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNIDFIFIGTKSD-- 330
             + +  +K     +ENADLIL + E++            EI    +     +  K D  
Sbjct: 73  HKLGEALVKAAVRSLENADLILYVVEVDDISISPEDDRIIEILQEVSTPIFLVVNKIDQV 132

Query: 331 ---------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                    + S + E+   +    +S+  G  +++L+  +K  L   F      I + +
Sbjct: 133 QQSERRLMAVASLFKEKLPIVGALGVSAKKGYNIDKLVQILKDKLPAGFPWYDEEILTDR 192

Query: 378 RHLYHLSQTVRYLEMASLNEK 398
              +   + +R   +   +E+
Sbjct: 193 PERFLAGEIIREKVLLLTHEE 213


>gi|242255948|gb|ACS88958.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAVLNALN 167


>gi|317055259|ref|YP_004103726.1| small GTP-binding protein [Ruminococcus albus 7]
 gi|315447528|gb|ADU21092.1| small GTP-binding protein [Ruminococcus albus 7]
          Length = 396

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 16/177 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LE 265
           ++    GE +  G+     G  NAGKSS+ NA   +++AIV+D PGTT D +   ++ L 
Sbjct: 3   LNDTPSGERVHIGF----FGRRNAGKSSVVNAFTNQELAIVSDTPGTTTDPVYKAMELLP 58

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN 319
              V I DT G  +   + E   +++T   +   D  +L+ +       + K+ I    +
Sbjct: 59  MGPVMIIDTPGYDDEGKLGELR-VRKTSEVLGRTDCAVLVTDCTRDLDESEKQLIKLFDS 117

Query: 320 IDFIFIG--TKSDLYSTYT--EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               ++    KSDL       +E +  +S+     + EL  K+  + + K + +P  
Sbjct: 118 RRIPYVIAKNKSDLLDDIPAADEKEIYVSALNNTMIHELREKVAQLSAYKEQNVPLV 174


>gi|213966005|ref|ZP_03394195.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium
           amycolatum SK46]
 gi|213951419|gb|EEB62811.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium
           amycolatum SK46]
          Length = 773

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 90/216 (41%), Gaps = 28/216 (12%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
            + +S         + +++ +   +    + +  G + + ++G  N GKSSL N L+ ++
Sbjct: 476 PHPTSALHGRGNADVMDEVVASFPEVPRAKSLPTGPRRVALVGKPNVGKSSLLNKLSGEN 535

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENAD 300
            A+V+++ GTT D +   + ++  L +  DTAGIR   +T    E     RT   ++NA+
Sbjct: 536 RAVVSNVAGTTVDPVDSLVQMDETLWRFVDTAGIRKKTKTAKGHEFYASLRTRSTIDNAE 595

Query: 301 LILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS---------TYTEEYDH-- 341
           +++ L + + +          +        +    K DL              E+  H  
Sbjct: 596 VVIFLVDASEQITEQDQRVLRMILDSGRALVVAYNKWDLMDEDRRDLLEREIEEQLAHVP 655

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 IS+ TG  +++L   +   + +  K++   
Sbjct: 656 WARRVNISAKTGRAVQKLEPAMLEAVESWDKRISTG 691



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 79/203 (38%), Gaps = 20/203 (9%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           SE  +       +   D   L+N  ++     +  E +     + I+G  N GKS++ N 
Sbjct: 301 SEAIERAETGQIDDDADWEELENAFAALGVSDEEEEAL---PTVAIVGRPNVGKSTMVNR 357

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
              +  A+V D PG TRD ++   +  G    + DT G       +     ++    +E 
Sbjct: 358 FIGRREAVVEDFPGVTRDRISYLGEWGGRRFWVQDTGGWDPDAKGMHAAIARQAETAMET 417

Query: 299 ADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYD---------H 341
           AD+I+++ +    I + +E+   +        I    K +  S   +  +         H
Sbjct: 418 ADVIVMVVDTTVGITATEEVMARRLQRAEQPVILAANKFESDSQLGDVAEFWALGLGEPH 477

Query: 342 LISSFTGEGLEELINKIKSILSN 364
             S+  G G  ++++++ +    
Sbjct: 478 PTSALHGRGNADVMDEVVASFPE 500


>gi|122702491|emb|CAL88436.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I + +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDLKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122700641|emb|CAL87909.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKTAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLNALN 167


>gi|165932728|ref|YP_001649517.1| GTPase Era [Rickettsia rickettsii str. Iowa]
 gi|165907815|gb|ABY72111.1| GTP-binding protein [Rickettsia rickettsii str. Iowa]
          Length = 339

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 20/161 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E
Sbjct: 53  VSVCIIGQPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFE 112

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE-INSKKEISF-------PKNIDFIFIGTKSDL 331
               +EK  ++  +  + +ADL+LL+ + + S  +I+          NI  IF+  K D+
Sbjct: 113 PKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIIPIFLLNKIDI 172

Query: 332 YSTYTEEYD------------HLISSFTGEGLEELINKIKS 360
            S Y  +                IS+ +G+ ++ L+  I S
Sbjct: 173 ESKYLNDIKAFLTENYPDSLLLPISALSGKNIDGLLEYITS 213


>gi|163733995|ref|ZP_02141436.1| GTP-binding protein EngA [Roseobacter litoralis Och 149]
 gi|161392531|gb|EDQ16859.1| GTP-binding protein EngA [Roseobacter litoralis Och 149]
          Length = 492

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 18/157 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLADLRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD ++    + T   V+ AD+ L + +             +I   +    I    KS+
Sbjct: 63  VTDDSLQGRMRRLTERAVDMADICLFMVDARVGITPTDLVFADILRKRAGHVILAANKSE 122

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKI 358
             +      +           +S+  GEGL +L   +
Sbjct: 123 GAAADAGVIEAYSLGLGEPIRLSAEHGEGLNDLYTHL 159



 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 102/285 (35%), Gaps = 44/285 (15%)

Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD-FSEEEDVQNFSSKEVLND 195
           +  +     +     GE   L  +  + L  + + +    D ++E            L++
Sbjct: 124 AAADAGVIEAYSLGLGEPIRLSAEHGEGLNDLYTHLMPLADAYAERAAEDAPEIDVTLDE 183

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
                 D+ + I      + ++    + ++G  N+GKS+L N +  +D  +     G TR
Sbjct: 184 DSG---DMEAAIRMPTANKPLQ----VAVVGRPNSGKSTLVNQILGEDRLLTGPEAGITR 236

Query: 256 DVLTIDLDLEG-----YLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKE 307
           D +++ +D  G       ++I DTAG+R+   +    EK  +      V+ A+++++L +
Sbjct: 237 DAISLRMDWVGPEGDVIPMRIFDTAGMRKKAKVQEKLEKLSVGDGLRAVKFAEVVVVLLD 296

Query: 308 INSKKE--------ISFPKNIDFIFIGTKSD------------------LYSTYTEEYDH 341
                E        ++  +    +    K D                  L          
Sbjct: 297 AAIPFEQQDLRIADLAEREGRAVVVAVNKWDIEENKQAKLKDLRESFERLLPQLRGAPLV 356

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
            +S+ TG GL+ L   I        +++  +     R L  + + 
Sbjct: 357 TVSARTGRGLDRLHTAILRAYEVWNRRV--TTAQLNRWLAGMLEA 399


>gi|315637145|ref|ZP_07892368.1| ribosome-associated GTPase EngA [Arcobacter butzleri JV22]
 gi|315478681|gb|EFU69391.1| ribosome-associated GTPase EngA [Arcobacter butzleri JV22]
          Length = 485

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 25/184 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI  +   + I+G  N GKSS+ NA+   + ++V+ I GTT D +    + +   +   D
Sbjct: 212 EIDESKINVAIIGRVNVGKSSILNAIVGAERSVVSPIAGTTIDPVDESFEYKEKQITFVD 271

Query: 274 TAGIRETD--DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFI 323
           TAG+R     + +EK  + RT   +E A++ L++ + + +      K         +  I
Sbjct: 272 TAGLRRRGSIEGIEKYALMRTKEMLEKANMALVVLDASRELTDLDEKIAGLVDEYGLGTI 331

Query: 324 FIGTKS----DLYSTYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKK 368
            +  K     D +    EE               +S+ TG  +E L +KI  I  N  ++
Sbjct: 332 IVLNKWDENMDTFQKIEEEIRRRFRFLSYAPIIAVSAKTGRSIERLKDKIIEIFDNYTQR 391

Query: 369 LPFS 372
           +P S
Sbjct: 392 IPTS 395



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 19/168 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKSSLFN +A K +AIV+D+ GTTRD+   ++++   +  + DT GI +T
Sbjct: 7   KIALIGQPNVGKSSLFNRIANKRIAIVSDMAGTTRDIRKHEIEILDRVGLLVDTGGIDDT 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLY 332
           +D +     ++     + AD+IL + +  +  +    +          +   +  K D  
Sbjct: 67  NDAIFSNVKRKAIETAKEADIILFMVDGKNIPDDKDKELFYELQRLGKELALVVNKIDND 126

Query: 333 STYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKL 369
                 ++             IS     G + L   I   L    + +
Sbjct: 127 KELERLWEFFEFGIGDENLFGISVSHNRGTKLLFEWIYKHLPVNLETV 174


>gi|163816524|ref|ZP_02207888.1| hypothetical protein COPEUT_02714 [Coprococcus eutactus ATCC 27759]
 gi|158448224|gb|EDP25219.1| hypothetical protein COPEUT_02714 [Coprococcus eutactus ATCC 27759]
          Length = 299

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 84/206 (40%), Gaps = 22/206 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + +  ++G+ + I+G  N GKS+L N L  + +AI ++   TTR+ +      +   +  
Sbjct: 1   MNKEYKSGF-VSIIGRPNVGKSTLMNRLIGQKIAITSNKAQTTRNRIQTVYTSDKGQIIF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFI 323
            DT GI    + + +  +K     ++  D++L + E  +      +  I   +      I
Sbjct: 60  LDTPGINRAKNKLGEYMLKVAESTLDEVDVVLWIVEATTFIGAGERYIIEQLQHVKTPII 119

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K D           +TY +  D      +S+  G+  +ELI+ I   L    +   
Sbjct: 120 VVVNKIDNVEEGKVFEAINTYKDACDFAEIVPVSALKGKNTDELIDTIMKYLPYGPQYYD 179

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLN 396
               + +     +++ +R   +  L+
Sbjct: 180 EDTVTDQPERQIVAELIREQALRQLD 205


>gi|319760649|ref|YP_004124587.1| GTP-binding protein engA [Candidatus Blochmannia vafer str. BVAF]
 gi|318039363|gb|ADV33913.1| GTP-binding protein engA [Candidatus Blochmannia vafer str. BVAF]
          Length = 478

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 34/192 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
            N  K+ ++G  N+GKS+  N + ++   I + IPGTTRD + I +        + DTAG
Sbjct: 201 NNSIKLAVVGRPNSGKSTFINYVVQESRVITSSIPGTTRDSVYIPIICYNQKYMLIDTAG 260

Query: 277 IRE-----TDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFI 323
           IR       D++ E+  + +TF  +++A +ILL+ +IN     +++S            +
Sbjct: 261 IRRGNNKYIDNLPERISVLKTFQVIKDAHVILLIIDINEGIVDQDLSLLNFIIRHGRSLV 320

Query: 324 FIGTKSDLYSTYTEEYD---------------------HLISSFTGEGLEELINKIKSIL 362
               K D +S   +                        H ISS  G G++ L   I+ I 
Sbjct: 321 IALNKWDNFSPLIKNSKSIILQSLTRKLNFLGFSTVKMHFISSLYGYGVKLLFKSIEKIH 380

Query: 363 SNKFKKLPFSIP 374
            +  K +     
Sbjct: 381 FDASKIINTVFL 392



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 23/165 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +  + +V++G  N GKS+LFN L +   A+V D  G TRD     +  +     I DT G
Sbjct: 4   KELFIVVLVGQKNVGKSTLFNRLTQNYRALVADYFGVTRDRQYGYIQHKNDKCIIVDTGG 63

Query: 277 IRETDDIVEKEGIK-RTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIG 326
           + E+ D   +  I  +T L +  AD++L +          + N    +      +   + 
Sbjct: 64  VDESSDSFLQNAINYQTNLAIREADIVLFVVNGRAYESSIDYNIIGNLRKLGKNNIFVVI 123

Query: 327 TKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKI 358
            K D +    +  +              +IS+  G G++ L++KI
Sbjct: 124 NKIDNFRFKNKNLETKYSYYSFGIKEVIVISAMHGYGIDILLDKI 168


>gi|295105866|emb|CBL03409.1| GTP-binding protein HflX [Gordonibacter pamelaeae 7-10-1-b]
          Length = 428

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 111/295 (37%), Gaps = 24/295 (8%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           + + ++  R       +  L          L   R        F E E       + V  
Sbjct: 118 LHATSKEGRLQVRLAQNEYLLPRLRGMWAHLASNRMGGGVGSRFGEGESQLEVDRRMVRK 177

Query: 195 DILFLKNDISSH--ISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  ++ ++     +   +      +G +K+ + G++NAGKSSL N L   DV +  D  
Sbjct: 178 RITSIRRELKHLAEVRAIQRESRYESGMFKVALAGYTNAGKSSLLNRLTNADV-LAYDKL 236

Query: 252 GTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D  T   +L EG  + ++DT G  +       E  K T  E+  ADL+L + + +S
Sbjct: 237 FATLDSTTRKFELPEGREITVTDTVGFIQKLPTTLIEAFKSTLDEITGADLVLHVVDASS 296

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGL 351
            +                 +++  + +  K DL                  +S+ TGEG+
Sbjct: 297 DEYEAQIAAVEDVLGQIEAQDLLRVLVFNKCDLLDGEQCGALKARHPQAQFVSAATGEGI 356

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
            EL+  +  + S + + L   IP ++  L  ++    ++      E    L ++A
Sbjct: 357 AELVGHVARVASAQDEHLDVVIPYNRGDLVSVAHERCHILSEKHEEDGTHLVMLA 411


>gi|122701589|emb|CAL88184.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|119716729|ref|YP_923694.1| GTP-binding protein EngA [Nocardioides sp. JS614]
 gi|119537390|gb|ABL82007.1| small GTP-binding protein [Nocardioides sp. JS614]
          Length = 461

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 27/178 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSL N LA ++ A+V ++ GTT D +   ++L G   +  DTAGIR+  
Sbjct: 203 IAIVGKPNVGKSSLLNKLAGEERAVVDNVAGTTVDPVDELIELGGKTWRFIDTAGIRKRV 262

Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD 330
                 E     RT   ++ A++ +L+ +     S++++   +         +    K D
Sbjct: 263 KEASGHEYYASLRTATAIDRAEVAVLVVDGGESISEQDVRIIQTVREAGRALVIAFNKWD 322

Query: 331 LYSTYTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L                           I++ TG  ++ L+  ++  L     ++   
Sbjct: 323 LVDEERRYYLDREIERDLVQVQWAPRINITARTGWHVDRLVPALEKALEGWETRVSTG 380



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 17/158 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D    G    + DT G     
Sbjct: 29  LAVVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDASWNGRAFTVVDTGGWDPDA 88

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             + +    +  + V  AD +L + +          +   I        +    K D   
Sbjct: 89  RGLAERIAGQAEVAVSLADAVLFVVDATVGITDADEAVVRILRKSAKPVVLAANKVDDQR 148

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
           T  E Y             S+  G G  +L++ + + L
Sbjct: 149 TEAEAYGLWNLGLGEPYAVSALHGRGSGDLLDAVLAAL 186


>gi|313672925|ref|YP_004051036.1| gtp-binding protein era [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939681|gb|ADR18873.1| GTP-binding protein Era [Calditerrivibrio nitroreducens DSM 19672]
          Length = 294

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 86/209 (41%), Gaps = 23/209 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++ G+ + I+G  NAGKS+L NA+  + V+I++  P TTR  +    + +   +   DT 
Sbjct: 3   LKTGF-VGIIGRPNAGKSTLLNAILGEKVSIISSKPNTTRTQIRGIYNSKDAQIIFIDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDF--IFIGT 327
           GI    D + K  +++ F  ++  D++  L E   KK       +   KN       I T
Sbjct: 62  GIHNAKDNINKLMVEKAFETIKMVDIVYFLVEPGEKKGPEYKQILELIKNEPIKKFLIIT 121

Query: 328 KSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D +               Y  +    ISS     +++LI   K +L       P    
Sbjct: 122 KIDAFEKKIIYDTAKQVFNDYQFDQVIPISSIKKINIDKLIEITKELLPEGDPIYPQDEI 181

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
                 + +++ +R  ++  + + +   D
Sbjct: 182 VDISEKFLIAEFIRE-QIFEILQDEVPYD 209


>gi|284048589|ref|YP_003398928.1| small GTP-binding protein [Acidaminococcus fermentans DSM 20731]
 gi|283952810|gb|ADB47613.1| small GTP-binding protein [Acidaminococcus fermentans DSM 20731]
          Length = 405

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 93/190 (48%), Gaps = 21/190 (11%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           + ++    GE    G    + G  NAGKSSL NA+  +D+AIV+D  GTT D ++  +++
Sbjct: 3   ASLNATPSGERTHIG----LFGCRNAGKSSLINAITGQDLAIVSDYKGTTTDPVSKAMEI 58

Query: 265 EGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEI 314
                V ++DT G+ +  D+ +   I++  L + + D+ LL+ +  +          +EI
Sbjct: 59  LPLGPVLLTDTPGMDDDTDLGQSR-IEKARLVLRSTDIALLVVDAATGMNDFDRKLLQEI 117

Query: 315 SFPKNIDFIFIGTKSDLYSTYT-----EEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
              + I ++ +  K DL  ++T     +++  L+S+  G  + EL  +I   L  +  K 
Sbjct: 118 RD-RKIPYLVVFNKCDLVPSFTLPEDLKDHSMLVSAQAGTRIWELKERISQALGKEEVKK 176

Query: 370 PFSIPSHKRH 379
           P  +   + H
Sbjct: 177 PLLLDLLEPH 186


>gi|4467671|emb|CAB37787.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTR++    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRNINNRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVSNALN 167


>gi|169830379|ref|YP_001716361.1| small GTP-binding protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637223|gb|ACA58729.1| small GTP-binding protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 427

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               + I G  NAGKSSL NAL  + VAIV D+PGTT D +   ++L     V + DTAG
Sbjct: 8   QRLHLAIFGRRNAGKSSLINALTGQQVAIVADVPGTTTDPVAKAMELLPLGPVMLIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTK 328
           + +T ++     ++++   ++ ADL+LL+ +                  +++  I +  K
Sbjct: 68  LDDTGELGRLR-VEKSLDVLQKADLVLLVVDPGQGFGACEQDVLAHVRARDLPVIAVINK 126

Query: 329 SDLYST-YTEEYD-------HLISSFTGEGLEELINKI 358
           +DLY      E+          +S+ TG G++ L   I
Sbjct: 127 ADLYPEGAAGEWPELSSLPRIPVSARTGYGIDRLKRLI 164


>gi|255262204|ref|ZP_05341546.1| ribosome-associated GTPase EngA [Thalassiobium sp. R2A62]
 gi|255104539|gb|EET47213.1| ribosome-associated GTPase EngA [Thalassiobium sp. R2A62]
          Length = 495

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 18/157 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLADLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TD+ ++    K T   V+ AD+ L + +  +          +I   +    I    K +
Sbjct: 63  ATDESLQGRMRKLTERAVDMADVCLFMIDARAGVLPADEVFADILRRRASKVILAANKGE 122

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKI 358
             +      +            S+  GEG+ EL++++
Sbjct: 123 GKAADAGVIEAYSLGLGEPLRLSAEHGEGMAELLSEL 159



 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 47/204 (23%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I ++G  NAGKS+L N +  +D  +     G TRD +++  + +G  V+I DTAG+R+
Sbjct: 206 LQIAVVGRPNAGKSTLINQILGEDRLLTGPEAGITRDAISLRTEWDGTHVRIFDTAGMRK 265

Query: 280 T---DDIVEKEGIKRTFLEVENA----------------DLILLLKEINSKKEISFPKNI 320
                D +EK  +      V+ A                DL +         +++  +  
Sbjct: 266 RAKVQDKLEKLSVSDGLRAVKFAEVVVVLLDVEIPFEQQDLRI--------ADLAEREGR 317

Query: 321 DFIFIGTKSD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
             +    K D                  L           +S+ TG GL+ L + I    
Sbjct: 318 AVVVAVNKWDIEGEKQAKLKDLRESFERLLPQLRGAPLVTVSAKTGRGLDRLHDAILRAH 377

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQT 386
               +++P S  +  R L  +++ 
Sbjct: 378 DTWNRRVPTSALN--RWLAGMTEA 399


>gi|122702457|emb|CAL88419.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|229828496|ref|ZP_04454565.1| hypothetical protein GCWU000342_00558 [Shuttleworthia satelles DSM
           14600]
 gi|229793090|gb|EEP29204.1| hypothetical protein GCWU000342_00558 [Shuttleworthia satelles DSM
           14600]
          Length = 310

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 25/205 (12%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISD 273
           + ++G+ + ++G  N GKS+L N L  + +AI ++ P TTR+ +           +   D
Sbjct: 11  VTKSGF-VAMIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVYTDPDRGQIVFLD 69

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIF 324
           T GI +  + + +  +      +++ DLIL L E +++         KE+   + I    
Sbjct: 70  TPGIHQAKNKLGQYMVGVAERSMKDVDLILWLIEPDTRVGGGDRHILKELEQIQ-IPVFL 128

Query: 325 IGTKSD---------LYSTYTEEYDHLIS----SFTGEGLEELINKIKSILSNKFKKLPF 371
           +  K D         +  TY  EYD        + +G+G ++LI  I S L         
Sbjct: 129 VINKIDMVKKEKILAVIDTYRGEYDFDEILPVCARSGDGCKDLIESIFSRLPQGPMFYDE 188

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLN 396
              + +      ++ +R   + +L+
Sbjct: 189 DTVTDQPMRQIAAEIIREKALYALD 213


>gi|222100702|ref|YP_002535270.1| GTP-binding protein era like protein [Thermotoga neapolitana DSM
           4359]
 gi|221573092|gb|ACM23904.1| GTP-binding protein era like protein [Thermotoga neapolitana DSM
           4359]
          Length = 301

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 78/195 (40%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I++G+ + + G  N GKS+  N +  + V IV+D P TTR+ +      +   +   DT 
Sbjct: 4   IKSGF-VALAGKPNVGKSTFINTVLGRKVVIVSDKPQTTRNRINCIYTDKDAQIVFVDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGT 327
           GI +    + +  ++     ++  D++L + +             +I        I    
Sbjct: 63  GIHKPLHRLGEYMVRAAVQALKGVDIVLFMLDAADGFTKTDEQVAKIVNESRTKTIIAVN 122

Query: 328 KSDLYSTYTEE--------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D+      +                H IS+  G G+ EL+++IK  L    +  P  +
Sbjct: 123 KIDVAGEEKAKSVGELAKSMVENAVSVHYISALKGIGVFELLDRIKEELPEGPQYYPEDM 182

Query: 374 PSHKRHLYHLSQTVR 388
            + +   +  ++ +R
Sbjct: 183 ITDRPLSFMAAEIIR 197


>gi|219682497|ref|YP_002468881.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|254783142|sp|B8D8C1|DER_BUCAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|219622230|gb|ACL30386.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|311086326|gb|ADP66408.1| GTP-binding protein EngA [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086900|gb|ADP66981.1| GTP-binding protein EngA [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 453

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 89/212 (41%), Gaps = 29/212 (13%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
              K  I+ ++   K  E+ +   K+  +G  N GKS+L N + K++  I ++ PGTT D
Sbjct: 166 EKFKKKITENL--YKDTELKKIAIKVAFIGRPNVGKSTLINGILKEERMITSNTPGTTLD 223

Query: 257 VLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEIN---S 310
            ++  +        + DTAG  +     +  ++  I +T   +E +++ILL+ + +    
Sbjct: 224 SISTPIKYNYENYTLIDTAGASKKKKKINDFQRFSIIKTLQTIEKSNVILLIIDASLQTC 283

Query: 311 KKEISFPK-----NIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGE 349
            +++S            + +  K DL+++   +                  H IS+   +
Sbjct: 284 HQDLSLADFIIHSGKGIVVVVNKCDLFNSVELKKIKELIKSKLKFLYFSKIHFISALYKK 343

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           G+ +L   IK    +  +K+  S      H+ 
Sbjct: 344 GIFQLFKSIKESYEDSKRKISTSTLIRTMHIA 375



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 18/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           IV++G +N GKS+LFN L K   A+V + PG TRD       L+    + + DTAG+   
Sbjct: 5   IVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKIILIDTAGLDIK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNI-----DFIFIGTKSDLY 332
            + +EK+   +T + ++ A LIL L         +E    KNI       I +  K D  
Sbjct: 65  LNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVINKIDGI 124

Query: 333 STYTE---------EYDHLISSFTGEGLEELINK 357
           +  ++         E    IS+   +G+  LIN+
Sbjct: 125 NEASKINEFYSLGFEKIQKISASHNQGINTLINR 158


>gi|159043715|ref|YP_001532509.1| GTP-binding protein EngA [Dinoroseobacter shibae DFL 12]
 gi|189037146|sp|A8LHW1|DER_DINSH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157911475|gb|ABV92908.1| small GTP-binding protein [Dinoroseobacter shibae DFL 12]
          Length = 490

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 18/157 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ E
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLGDLRFTVIDTAGLEE 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD ++    + T   V  AD  L L +             +I    N   +    K++
Sbjct: 63  ATDDSLQGRMRRLTERAVSMADACLFLIDARVGVTPTDEVFADILRRSNAHVLLGANKAE 122

Query: 331 -------LYSTYTEEY--DHLISSFTGEGLEELINKI 358
                  L   Y         +S+  GEG+ EL   +
Sbjct: 123 GRAAEAGLIEAYALGLGEPLALSAEHGEGMAELTGAL 159



 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 106/263 (40%), Gaps = 38/263 (14%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212
            LS+ +G+ + +LT     +    + +E  + ++    +V  D    +  +    ++ K 
Sbjct: 143 ALSAEHGEGMAELTGALMPLIDAFEETENAETEDAPETDVALDPDAEEETVVRVPTKAK- 201

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
                   ++ ++G  NAGKS+L N L  +D  +     G TRD +++ +D +G  V+I 
Sbjct: 202 ------PLQVAVVGRPNAGKSTLINQLLGEDRLLTGPEAGITRDAISLAMDWDGLPVRIF 255

Query: 273 DTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNID 321
           DTAG+R+   +    EK  +      V+ A+++++L +     E        ++  +   
Sbjct: 256 DTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAGIPFEQQDLRIADLAEREGRA 315

Query: 322 FIFIGTKSD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
            +    K D                  L           +S+ TG G++ L + +     
Sbjct: 316 VVIAVNKWDMEDDKQGKLKELKEAFERLLPQLRGAPLVTVSAKTGRGMDRLRDAVLRAHE 375

Query: 364 NKFKKLPFSIPSHKRHLYHLSQT 386
              +++P +  +  R L  + + 
Sbjct: 376 VWNRRVPTAALN--RWLGAMVEA 396


>gi|295094022|emb|CBK83113.1| GTP-binding protein Era [Coprococcus sp. ART55/1]
          Length = 299

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 84/206 (40%), Gaps = 22/206 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + +  ++G+ + I+G  N GKS+L N L  + +AI ++   TTR+ +      +   +  
Sbjct: 1   MNKEYKSGF-VSIIGRPNVGKSTLMNRLIGQKIAITSNKAQTTRNRIQTVYTSDKGQIIF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFI 323
            DT GI    + + +  +K     ++  D++L + E  +      +  I   +      I
Sbjct: 60  LDTPGINRAKNKLGEYMLKVAESTLDEVDVVLWIVEATTFIGAGERYIIEQLQHVKTPII 119

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K D           +TY +  D      +S+  G+  +ELI+ I   L    +   
Sbjct: 120 VVVNKIDNVEESKVFEAINTYKDACDFAEIVPVSALKGKNTDELIDTIMKYLPYGPQYYD 179

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLN 396
               + +     +++ +R   +  L+
Sbjct: 180 EDTITDQPERQIVAELIREQALRQLD 205


>gi|331091761|ref|ZP_08340593.1| hypothetical protein HMPREF9477_01236 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402660|gb|EGG82227.1| hypothetical protein HMPREF9477_01236 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 399

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 16/170 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  N GKSSL NAL  + ++IV+D  GTT D +   ++L     V   DTAG
Sbjct: 10  NRIHIGIFGRRNCGKSSLINALTGQALSIVSDTKGTTTDPVLKAMELLPIGPVVFIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTK 328
           + +  ++ +   I +T+  +   D+ LL+ + +    +           K I ++ I  K
Sbjct: 70  LDDEGELGQLR-ITKTYQMLNKTDIALLVIDSSVGMTVEDENILKKIQDKQIPYLIIHNK 128

Query: 329 SDLYSTYTE------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            DL    T       E+   IS+ TG  + EL  KI ++L       P  
Sbjct: 129 CDLPEKSTLSLAEHTEHTIEISAKTGFHIRELKEKISTLLPKDVNGTPIV 178


>gi|167766294|ref|ZP_02438347.1| hypothetical protein CLOSS21_00798 [Clostridium sp. SS2/1]
 gi|167712013|gb|EDS22592.1| hypothetical protein CLOSS21_00798 [Clostridium sp. SS2/1]
 gi|291559076|emb|CBL37876.1| iron-only hydrogenase maturation protein HydF [butyrate-producing
           bacterium SSC/2]
          Length = 402

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           +   I + G  NAGKSS+ NA+  +++AIV+++ GTT D +   ++L     V + DT G
Sbjct: 10  DRIHIALFGKRNAGKSSVINAMTNQELAIVSNVKGTTTDPVYKAMELLPLGPVVMIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNIDFIF--IGTK 328
           + +  ++ EK  +K+    +  AD+ L++ +  +      +  I   ++    +  +  K
Sbjct: 70  LDDEGELGEKR-VKKAKEVLAKADIALVIMDATAGMTEFEEDMIRLIEDRKIPYLKVYNK 128

Query: 329 SDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            DL     + E+    +S+   +G+ EL  +I  ++   
Sbjct: 129 MDLANAQEWKEDKACFVSAKDKKGIWELKEEIGKLVPTD 167


>gi|238924233|ref|YP_002937749.1| GTP-binding protein Era [Eubacterium rectale ATCC 33656]
 gi|238875908|gb|ACR75615.1| GTP-binding protein Era [Eubacterium rectale ATCC 33656]
          Length = 303

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + +AI ++ P TTR+ +     D+E   +   DT GI + 
Sbjct: 10  VTIIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVYTDMEKGQIVFLDTPGIHKA 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSDL- 331
            + + +  +      +   D++L L E         +  I   K  N   I I  K D  
Sbjct: 70  KNKLGEYMVNVAEKTLNEVDVVLWLVEPTNFIGAGEQHIIEQLKKVNTPVILIINKVDTV 129

Query: 332 --------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                     TY + +D       S+  G+  +++IN I   L    +       + +  
Sbjct: 130 EKEKVLEYIDTYRKVFDFAEIIPTSALRGQNTDDVINSIFKYLPYGPQFYDEDTITDQPE 189

Query: 380 LYHLSQTVRYLEMASLNEK 398
               ++ +R   + +LN++
Sbjct: 190 RAICAEIIREKALHALNDE 208


>gi|122701371|emb|CAL88075.1| GTPase [Helicobacter pylori]
 gi|122701395|emb|CAL88087.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTL 166


>gi|284053849|ref|ZP_06384059.1| GTP-binding protein Era [Arthrospira platensis str. Paraca]
          Length = 228

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 23/207 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+L N L  + +AI + I  TTR+ L   L  +   +   D
Sbjct: 14  EGYKSGF-VGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTDSAQIIFVD 72

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFI-- 325
           T GI +    + K  +K   L + + D+++ + + +       +  +    +  F  I  
Sbjct: 73  TPGIHKPHHQLGKVLVKNAKLAIASVDVLVFVVDASVMSGGGDRYIVDLLTHTKFPVILG 132

Query: 326 GTKSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPF 371
             K DL     E  D                 S+ TG G+E L N + + L       P 
Sbjct: 133 LNKWDLQPDQYEAIDQSYQQFAEAHKWQMVKFSAVTGAGVETLQNLLINSLDPGPYYYPP 192

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEK 398
            + + +   + + + +R   +    E+
Sbjct: 193 DLVTDQPERFIMGELIREQILLHTREE 219


>gi|225435462|ref|XP_002282837.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 677

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 15/148 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ + GTTRD +  +    +G   ++ DTAGIR  
Sbjct: 384 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTGPDGQKYRLIDTAGIRRR 443

Query: 281 DDI------VEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDFI-----FIG 326
             +       E   + R F  +  +D++ L+ E  +   +++    + I+        + 
Sbjct: 444 AAVASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEREGKGCLIVV 503

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEEL 354
            K D      ++          E L  L
Sbjct: 504 NKWDTIPNKNQQTATYYEQDVREKLRVL 531



 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 66/185 (35%), Gaps = 49/185 (26%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           ++ I+G  N GKS+LFN L   + AIV D PG TRD L        Y   + DT G+   
Sbjct: 175 RVTIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRAFWGDYEFMVIDTGGVLTI 234

Query: 278 -RETDDIVEKEGI--------------------------KRTFLEVENADLILLLKEINS 310
            +  D+++E+  I                          K+    +E + +I+ L +  +
Sbjct: 235 SKSQDNVMEELAITKTIGMDGIPLASREAAVARMPTMIEKQATAAIEESSVIIFLVDGQA 294

Query: 311 KKEISFPK----------NIDFIFIGTKSDLYSTYTEEYDHLI---------SSFTGEGL 351
               +  +          N   +    K +       +              S+ +G G 
Sbjct: 295 GLSAADVEIADWLRKNYSNKCIVLAVNKCESPKKGIMQALEFWSLGFTPLPISAVSGTGT 354

Query: 352 EELIN 356
            EL++
Sbjct: 355 GELLD 359


>gi|111221687|ref|YP_712481.1| GTP-binding protein EngA [Frankia alni ACN14a]
 gi|111149219|emb|CAJ60904.1| GTP-binding protein [Frankia alni ACN14a]
          Length = 502

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D    G    + DT G     
Sbjct: 64  VAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRIAYDAVWNGRRFTLVDTGGWEPDA 123

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
             +  +  ++    ++ AD +L + ++         +   +     +  I +  K D   
Sbjct: 124 SGLAAQVSEQASAALDTADAVLFIVDVTTGATDADEAVARVLHRSGLPVILVANKVDDNR 183

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                  L+     E  H +S+  G G  +L++ + ++L    +++
Sbjct: 184 FESDAAALWGLGLGE-PHPVSALHGRGSGDLLDAVLAVLPEAPREV 228



 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 78/205 (38%), Gaps = 31/205 (15%)

Query: 198 FLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            L + + + + +    E+        ++ ++G  N GKSSL N +A    ++V D+ GTT
Sbjct: 212 DLLDAVLAVLPEAPR-EVFTETDGPRRVALIGRPNVGKSSLLNKIAGSRRSLVHDVAGTT 270

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK 311
           RD +   + + G      DTAG+R         E     RT   +E A++ ++L   +  
Sbjct: 271 RDPVDELVTVGGEEWMFIDTAGLRRRIREASGAEYYSSLRTAAALEAAEVAIVLLAADEP 330

Query: 312 K--------EISFPKNIDFIFIGTKSDLYST---YTEEYDH-------------LISSFT 347
                     +        +    K DL      YT E +               IS+ T
Sbjct: 331 LTEQDQRVITMVIEAGRALVIAFNKWDLVDEDRRYTLEREIDRDLGRIAWAPRVNISART 390

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
           G   + L   +++ L +   ++P  
Sbjct: 391 GRATDRLAPALRTALESWGTRIPTG 415


>gi|86740164|ref|YP_480564.1| GTP-binding protein EngA [Frankia sp. CcI3]
 gi|86567026|gb|ABD10835.1| Small GTP-binding protein domain [Frankia sp. CcI3]
          Length = 487

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 73/166 (43%), Gaps = 19/166 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D    G    + DT G     
Sbjct: 51  VAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDAVWSGRRFTLVDTGGWEPDA 110

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNI---DFIFIGTKSD--- 330
             +  +  ++    ++ AD +L + ++     ++ + ++   +      I +  K D   
Sbjct: 111 TGLAAQVSEQARAALDTADAVLFIVDVVTGATDADEAVARVLHRCGLPVILVANKVDDVR 170

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                  L+S    E  H +S+  G G  +L++ + + L    +++
Sbjct: 171 FEADAAALWSLGLGE-PHPVSALHGRGSGDLLDAVLAALPEAPREI 215



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 109/297 (36%), Gaps = 38/297 (12%)

Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS-MEGMSGELSSLYGQWIDKL 165
           LA       RA  +          + D+++  T+    ++ +    G    L    +D  
Sbjct: 113 LAAQVSEQARAALD---TADAVLFIVDVVTGATDADEAVARVLHRCGLPVILVANKVD-- 167

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN---GYKI 222
             +R   +A   +S      +  S         L + + + + +    EI+       ++
Sbjct: 168 -DVRFEADAAALWSLGLGEPHPVSALHGRGSGDLLDAVLAALPEAPR-EILTESDGPRRV 225

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G  N GKSSL N LA    ++V D+ GTTRD +   + + G      DTAG+R    
Sbjct: 226 ALIGRPNVGKSSLLNKLAGSRRSLVHDVAGTTRDPVDELVTVGGEEWMFIDTAGLRRRVR 285

Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIG--TKSDL 331
                E     RT   +E A++ ++L   +        + IS   +     +    K DL
Sbjct: 286 EASGAEYYSSLRTASALEAAEVAIVLLAADEPVTEQDQRVISMVVDAGRALVLAFNKWDL 345

Query: 332 YST---YTEEYDH-------------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             T    T E +               +S+ TG   + L   +++ L +   ++P  
Sbjct: 346 VDTDRRLTLEREIVRDLGRVAWAPRVNVSARTGRATDRLAPALRTALESWGTRIPTG 402


>gi|255292050|dbj|BAH90531.1| GTP-binding protein EngA [uncultured bacterium]
          Length = 466

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 95/252 (37%), Gaps = 29/252 (11%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL- 212
           L       ++K  H+   +     F          S    + +  L + +       +  
Sbjct: 109 LGRPVRVAVNKAEHLNPELVRAEFFELGLGEPTPISASHGHGVRDLLDTVLDAFPPAEPV 168

Query: 213 -GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E   +     ++G  NAGKS+L N L  +   I + +PGTTRD + + + L+G    +
Sbjct: 169 PEEAEDSRPVFAVVGRPNAGKSTLINRLLGQSRLIESPLPGTTRDCVRVPVQLDGRDCLL 228

Query: 272 SDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNI 320
            DTAG+R   +  + +EK  + +T   ++ A +++L+ +               +  +  
Sbjct: 229 LDTAGLRRRAQVHEAIEKFSVVKTLQAIDLAQVVVLVIDGELGIGEQDARIAGQALQRGR 288

Query: 321 DFIFIGTKSD---------LYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSN 364
             +    K+D         L                  IS+ +G GL+ L   + ++ S+
Sbjct: 289 ALVVAVNKADTLDDSARAALRREVERRLPFIGFAPVEFISAKSGRGLKALTRSLFAVHSS 348

Query: 365 KFKKLPFSIPSH 376
              ++P S  + 
Sbjct: 349 ALTRVPTSELTR 360



 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I +LG  N GKS+LFN L +   A+V D PG TRD L     L      + DT G+   D
Sbjct: 5   IALLGRPNVGKSTLFNRLTRTRDALVADFPGVTRDRLVGSGQLGDRPFWVVDTGGLLGED 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
             +  +   +     + AD +LL+ +  +          E              K++  +
Sbjct: 65  SQLSGKVSDQALAAAQEADAVLLVVDARAGPTADDRTIAETLRTLGRPVRVAVNKAEHLN 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
                 +           IS+  G G+ +L++ +     
Sbjct: 125 PELVRAEFFELGLGEPTPISASHGHGVRDLLDTVLDAFP 163


>gi|122702839|emb|CAL88609.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|89897898|ref|YP_515008.1| GTP-binding protein EngA [Chlamydophila felis Fe/C-56]
 gi|123483923|sp|Q256C5|DER_CHLFF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|89331270|dbj|BAE80863.1| GTP-binding GTPase [Chlamydophila felis Fe/C-56]
          Length = 475

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 78/206 (37%), Gaps = 34/206 (16%)

Query: 204 SSHISQGKLGEII-------RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
              +S  +  EI+           KI ++G  N GKSS+ N L  ++  I+ +IPGTTRD
Sbjct: 190 EESLSDYEEEEILFSKPPASDKPLKIALIGRPNVGKSSIINGLLNEERCIIDNIPGTTRD 249

Query: 257 VLTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLLKEIN---- 309
            + I            DTAG+R+     + +E     RT   +  AD+ LL+ +      
Sbjct: 250 NVDILYSHNDRSYLFIDTAGLRKMKSVKNSIEWISSSRTEKAIARADICLLVIDATHCLS 309

Query: 310 --SKKEISFPKNI--DFIFIGTKSDLYSTYTEEY----------------DHLISSFTGE 349
              K+ +S         I +  K DL      E+                   IS+    
Sbjct: 310 SYDKRILSLISKHKKPHIILANKWDLIKGVRMEHYIRDLRSTDVYIGQSRILCISAAKKR 369

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
            L  + + I  +     +K+P  + +
Sbjct: 370 NLRHIFSSIDELHETVSRKVPTPVVN 395



 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 20/163 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-R 278
            +I ILG  N GKSSLFN + K+ +AIV    GTTRD L  ++      V++ DT G+ +
Sbjct: 2   LRIAILGRPNVGKSSLFNRMCKQSLAIVNSQEGTTRDRLYGEIRGWSVPVQVIDTGGVDK 61

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKSD 330
           +++D  +K   K+       AD++LL+ +I    ++++ +  K         I +  K+D
Sbjct: 62  DSEDHFQKHIYKQALAGAGEADILLLVIDIRCGITEQDAAIAKQLLPLKKPLILVANKAD 121

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                     LY     E    +S+   + ++ L+ KIK++ +
Sbjct: 122 TLKDEHHVHELYKIGISEI-LTVSASHDKHIDRLLQKIKTLAN 163


>gi|122702451|emb|CAL88416.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G  V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGREVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ +   L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLRAL 166


>gi|4467661|emb|CAB37782.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKAINLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGINALIDAILRAL 166


>gi|116511210|ref|YP_808426.1| GTP-binding protein Era [Lactococcus lactis subsp. cremoris SK11]
 gi|122940350|sp|Q031W8|ERA_LACLS RecName: Full=GTPase Era
 gi|116106864|gb|ABJ72004.1| GTPase [Lactococcus lactis subsp. cremoris SK11]
          Length = 303

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 81/198 (40%), Gaps = 22/198 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             +  ++G+ + ILG  N GKS+  N +  + +AI++D P TTR+ +      E   +  
Sbjct: 2   TNKKFKSGF-VAILGRPNVGKSTFMNHVMGQKIAIMSDKPQTTRNKIQGIYTTENEQIVF 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFI 323
            DT GI +  + +    ++  +  +   D++L +   +  +       I   K   +  I
Sbjct: 61  IDTPGIHKPHNALGDFMVQSAYSTLRECDVVLFMVAADEPRSTGENMIIERLKKAEVPVI 120

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K D         + + YT + +      IS+  G   E LI+ +   L    +  P
Sbjct: 121 LVVNKIDKIHPDRLFEIVADYTSQMEFSEVVPISAKQGNNTERLIDTLSEKLDEGPQYFP 180

Query: 371 FSIPSHKRHLYHLSQTVR 388
               +     + +S+ +R
Sbjct: 181 EDQITDHPERFLVSEMIR 198


>gi|122701695|emb|CAL88237.1| GTPase [Helicobacter pylori]
 gi|122701699|emb|CAL88239.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122701339|emb|CAL88059.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKGT 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 70  -LLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRAL 166


>gi|260438846|ref|ZP_05792662.1| GTP-binding protein Era [Butyrivibrio crossotus DSM 2876]
 gi|292808685|gb|EFF67890.1| GTP-binding protein Era [Butyrivibrio crossotus DSM 2876]
          Length = 298

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI ++ P TTR+ +      E   +   DT GI +  
Sbjct: 8   VALIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVYTDERGQIIFLDTPGIHKAK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNI--DFIFIGTKSD--- 330
           + + +  +      +E+ D+IL L E         +  I+  KN     I +  K D   
Sbjct: 68  NKLGEYMVTVAEKTLEDVDVILWLVEPTTYIGAGEQHIIATLKNCKKPVILVINKVDTVD 127

Query: 331 ------LYSTYTEEY----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     Y++E        +S+  G   E+L   I   L            + +   
Sbjct: 128 KPEILKFIDRYSKEMKFSEIIPVSALKGINTEDLKETIFKYLPYGPMFYDEDTVTDQPMR 187

Query: 381 YHLSQTVRYLEMASLNEK 398
             +++ +R   +  L+++
Sbjct: 188 QIVAELIREKALKCLSDE 205


>gi|122702701|emb|CAL88540.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ I   L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILRAL 166


>gi|114762902|ref|ZP_01442334.1| GTP-binding protein EngA [Pelagibaca bermudensis HTCC2601]
 gi|114544512|gb|EAU47519.1| GTP-binding protein EngA [Roseovarius sp. HTCC2601]
          Length = 487

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 18/158 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  + +A+V D PG TRD+   +  L      + DTAG+ +
Sbjct: 3   FSLAIVGRPNVGKSTLFNRLVGRRLALVDDQPGVTRDLREGEGKLGDLRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD +     + T   V+ AD+ L + +             EI   +    I    KS+
Sbjct: 63  ATDDSLPGRMRRLTERAVDMADVCLFMIDARVGVTPTDEIFAEILRKRAKHVILGANKSE 122

Query: 331 -------LYSTYTEEY--DHLISSFTGEGLEELINKIK 359
                  +   Y         IS+  GEG+ +L   ++
Sbjct: 123 GSAADAGVLEAYALGLGEPLRISAEHGEGMPDLYGALQ 160



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 79/209 (37%), Gaps = 29/209 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +  ++S    +           +I ++G  NAGKS+L N +  ++  +     G TRD 
Sbjct: 180 SVDEEVSEEADESLPEITATKPLQIAVVGRPNAGKSTLVNKIIGEERLLTGPEAGITRDA 239

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE- 313
           +++  +  G  ++I DTAG+R+   +    EK  +      V+ A+++++L +     E 
Sbjct: 240 ISVRTEWGGVPMRIFDTAGMRKKARVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQ 299

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYD------------------HLISSFTG 348
                  ++  +    +    K D+     E+                      +S+ TG
Sbjct: 300 QDLRIADLAEREGRAVVIAVNKWDIEDEKQEKLRDLKESFERLLPQLRGAPLVTVSAKTG 359

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHK 377
            GL+ L   I        +++     +  
Sbjct: 360 RGLDRLQAAIMKAWEVWNRRISTGQLNRW 388


>gi|118468050|ref|YP_888037.1| GTP-binding protein EngA [Mycobacterium smegmatis str. MC2 155]
 gi|118169337|gb|ABK70233.1| GTP-binding protein EngA [Mycobacterium smegmatis str. MC2 155]
          Length = 471

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 38  LAIVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDANWLGRRFVVQDTGGWEPDA 97

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD--- 330
             +++    +  + +  AD ++L+ +          +  ++             K D   
Sbjct: 98  KGLQQLVADQALVAMRTADAVILVVDAVVGATAADEAAAKLLRRSGKPVFLAANKVDTER 157

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                  L+S    E  H IS+  G G+ +L++ +   L  
Sbjct: 158 GEADAASLWSLGVGE-PHPISAMHGRGVADLLDTVMEKLPE 197



 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA    ++V D+ GTT D +   ++L G   +  DTAG+R  
Sbjct: 211 RVALVGKPNVGKSSLLNRLAGDHRSVVHDMAGTTVDPVDSLIELGGKTWRFVDTAGLRRK 270

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
                  E     RT   ++ A+++++L + +            +        +    K 
Sbjct: 271 VGQATGHEFYASVRTHGAIDAAEVVIVLIDASQPLTEQDQRVLSMVIEAGRALVLAFNKW 330

Query: 330 DLYST-----YTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL         + E +             IS+ TG  +++L+  +++ L++   ++   
Sbjct: 331 DLVDEDRRYLLSREIERELVQVQWAPRINISALTGRAVQKLVPALETSLTSWDTRISTG 389


>gi|220932088|ref|YP_002508996.1| GTP-binding protein Era [Halothermothrix orenii H 168]
 gi|259645948|sp|B8CXI2|ERA_HALOH RecName: Full=GTPase Era
 gi|219993398|gb|ACL70001.1| GTP-binding protein Era [Halothermothrix orenii H 168]
          Length = 294

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 81/193 (41%), Gaps = 21/193 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L N L  + V I +  P TTR+ +          +   DT 
Sbjct: 3   YKSGF-VSVIGRPNVGKSTLINNLIGQKVVITSPRPQTTRNSVRGIYTRPEGQIVFVDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIG--T 327
           GI +  + ++   +++ +  +E+ D+I+ + + N       +   +  K +    I    
Sbjct: 62  GIHKARNKLDNYMLEKAYESLEDIDVIIFMVDGNYSFGKGDEFIYNQIKGVRVPVIVAMN 121

Query: 328 KSDL------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           K D             Y   T      IS+  G  L+ L+ +I + L    +  P  + +
Sbjct: 122 KIDRINKEIVMERQKNYEERTGFPVIPISASRGTNLDTLVEEIFTFLPEGPQYYPEDMVT 181

Query: 376 HKRHLYHLSQTVR 388
            +   + +++ +R
Sbjct: 182 DQIEQFVVAELIR 194


>gi|320011615|gb|ADW06465.1| ribosome-associated GTPase EngA [Streptomyces flavogriseus ATCC
           33331]
          Length = 489

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 23/221 (10%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D +     E+     F   ++   I     G +      + ++G  N GKS+L N +  +
Sbjct: 19  DAEYAEFMELAAQEGFDPEEVEGAIGDAGHGPL----PVLAVVGRPNVGKSTLVNRIIGR 74

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
             A+V D PG TRD ++ + +  G   K+ DT G  +    ++     +    +  AD +
Sbjct: 75  REAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGGWEQDVLGLDASVAAQAEYAISTADAV 134

Query: 303 LLLKEIN--------SKKEISFPKNIDFIFIGTKSD----------LYSTYTEEYDHLIS 344
           + + +          +   +        +    K D          L+S    E  H +S
Sbjct: 135 VFVVDATVGATDTDEAVVRLLRKAKKPVVLCANKVDGQSGEADATALWSLGLGE-PHPVS 193

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           S  G G  ++++ +   L     +   +     R +  + +
Sbjct: 194 SLHGRGTGDMLDAVLEALPEAPAQSFGTALGGPRRIALIGR 234



 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 104/282 (36%), Gaps = 33/282 (11%)

Query: 123 IDLLEAESLADLISS-----ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
             +  A+++  ++ +     +T+      +      +     +   +     +     L 
Sbjct: 126 YAISTADAVVFVVDATVGATDTDEAVVRLLRKAKKPVVLCANKVDGQSGEADATALWSLG 185

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
             E   V +   +   + +  +   +    +Q   G  +    +I ++G  N GKSSL N
Sbjct: 186 LGEPHPVSSLHGRGTGDMLDAVLEALPEAPAQS-FGTALGGPRRIALIGRPNVGKSSLLN 244

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFL 294
            +A +D  +V ++ GTTRD +   ++L G   K  DTAGIR    + E        RT  
Sbjct: 245 KVAGEDRVVVNELAGTTRDPVDELINLGGITWKFIDTAGIRRKVHLQEGADYYASLRTAA 304

Query: 295 EVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYST-----YTEEYD- 340
            VE A++ ++L + +    +        +       +    K D            E D 
Sbjct: 305 AVEKAEVAVILIDSSESISVQDQRIVTMAVEAGRAVVIAFNKWDTLDEERRYYLEREIDT 364

Query: 341 ----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                       +S+ TG  +E+L+  I++ +     ++P  
Sbjct: 365 ELAQISWAPRVNVSAVTGRHMEKLVPAIETAIEGWETRVPTG 406


>gi|239940226|ref|ZP_04692163.1| GTP-binding protein EngA [Streptomyces roseosporus NRRL 15998]
 gi|239986716|ref|ZP_04707380.1| GTP-binding protein EngA [Streptomyces roseosporus NRRL 11379]
 gi|291443657|ref|ZP_06583047.1| GTP-binding protein engA [Streptomyces roseosporus NRRL 15998]
 gi|291346604|gb|EFE73508.1| GTP-binding protein engA [Streptomyces roseosporus NRRL 15998]
          Length = 489

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 86/227 (37%), Gaps = 23/227 (10%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +  E  D +     E+     F   ++   + +   G +      + ++G  N GKS+L 
Sbjct: 13  EHGELGDAEYAEFMELAAQEGFDPEEVEGALGEAGHGPL----PVLAVVGRPNVGKSTLV 68

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N +  +  A+V D PG TRD ++ + +  G   K+ DT G  +    ++     +    +
Sbjct: 69  NRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGGWEQDVLGLDASVAAQAEYAI 128

Query: 297 ENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD----------LYSTYTEE 338
           E AD ++ + +          +  ++        +    K D          L+S    E
Sbjct: 129 ETADAVVFVVDSTVGATDTDEAVVKLLRRAGKPVVLCANKVDGQSGEADATALWSLGLGE 188

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             + +SS  G G  ++++ +   L +   +   +     R +  + +
Sbjct: 189 -PYPVSSLHGRGTGDMLDAVLEALPDAPAQKFGTALGGPRRIALIGR 234



 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 30/205 (14%)

Query: 198 FLKNDISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            + + +   +      K G  +    +I ++G  N GKSSL N +A +D  +V ++ GTT
Sbjct: 202 DMLDAVLEALPDAPAQKFGTALGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTT 261

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINSK 311
           RD +   ++L G   K  DTAGIR    + E        RT   VE A++ ++L + +  
Sbjct: 262 RDPVDELINLGGITWKFIDTAGIRRRVHLQEGADYYASLRTAAAVEKAEVAVVLIDSSES 321

Query: 312 KEI--------SFPKNIDFIFIGTKSD---------LYSTYTEEYDH-------LISSFT 347
             +        +       +    K D         L      E           +S+ T
Sbjct: 322 ISVQDQRIITMAVEAGRAIVVAFNKWDTLDEERRYYLEREIETELAQIAWAPRVNVSAVT 381

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
           G  +E+L+  I++ L     ++P  
Sbjct: 382 GRHMEKLVPAIETALEGWETRVPTG 406


>gi|292806524|gb|ADE42392.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|122701365|emb|CAL88072.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L  + V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNSHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALN 167


>gi|237756325|ref|ZP_04584877.1| GTP-binding protein Era [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691511|gb|EEP60567.1| GTP-binding protein Era [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 307

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 23/204 (11%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +   +  E  R G+ + I+G  N GKS+L N +    ++IV+  P TTR  +     L  
Sbjct: 1   MENFQNYENFRAGF-VAIVGRPNVGKSTLLNNIIGTKLSIVSPRPQTTRMRILGVKHLPD 59

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNI--- 320
             +   DT G+++  D++ K  ++     +E+AD+IL++ +  +   K++    +N    
Sbjct: 60  AQIIFLDTPGVQKGGDLLTKSVMESVVSGIESADVILMVIDAEAGWTKEDKEIVENYLKK 119

Query: 321 ---DFIFIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSN 364
                I    K D         L    T+ YD      IS+     ++ELI  IK  L  
Sbjct: 120 VNKPAILAINKIDKIKRDLVLPLIEESTKIYDFKEFVPISAIKNLNIDELIETIKKYLPE 179

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVR 388
                P    +     +++++ +R
Sbjct: 180 SPPLYPEDQITDLPLKFYIAEIIR 203


>gi|57168525|ref|ZP_00367658.1| GTPase [Campylobacter coli RM2228]
 gi|305432942|ref|ZP_07402100.1| ribosome-associated GTPase EngA [Campylobacter coli JV20]
 gi|57020030|gb|EAL56707.1| GTPase [Campylobacter coli RM2228]
 gi|304444096|gb|EFM36751.1| ribosome-associated GTPase EngA [Campylobacter coli JV20]
          Length = 460

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 29/240 (12%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL---GEIIRN 218
           + ++ ++       LD            + ++ D      D   H  +GK     E+ +N
Sbjct: 135 VKEVFNLSVTHNIGLDELYNWLENFLDEQFLIPDEEENLEDFLEHYEEGKEFQFKELDQN 194

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++  DTAGIR
Sbjct: 195 YIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESIVYKDKVIEFVDTAGIR 254

Query: 279 ETDDIV--EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
           +   I   E+  + RT   + N+ + LL+ + N            ++    +  I +  K
Sbjct: 255 KRGKIQGLERFALNRTEKILSNSQIALLVLDANEGFNELDERIAGLAAKHYLGVIIVLNK 314

Query: 329 SDLYSTYTEEYDHL----------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D      ++                    +S+ +G+ +  L+ KI  + +N  +K+P S
Sbjct: 315 WDKTEFEFDKVVKELKLDRFKFLAYAPVVSVSALSGKRVHVLLEKILEVFTNFTQKIPTS 374



 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI ++I GTTRD    ++ +      + D+ G+ E++
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSEISGTTRDTNKTEVFINSKKALLIDSGGLDESN 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           ++  K   K T    + +D+IL L +     +    +              +  K D   
Sbjct: 64  ELF-KNVKKNTLKIAKQSDIILYLVDGKLSPDDEDRQFFHSLKKLGKPIALVINKVDNKK 122

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKF 366
                ++            S     GL+EL N +++ L  +F
Sbjct: 123 DEERSWEFANFGVKEVFNLSVTHNIGLDELYNWLENFLDEQF 164


>gi|284991408|ref|YP_003409962.1| ribosome-associated GTPase EngA [Geodermatophilus obscurus DSM
           43160]
 gi|284064653|gb|ADB75591.1| ribosome-associated GTPase EngA [Geodermatophilus obscurus DSM
           43160]
          Length = 447

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 62/167 (37%), Gaps = 17/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD +  +    G    + DT G     
Sbjct: 11  VAIVGRPNVGKSTLVNRFLGRRAAVVQDTPGVTRDRIAYEALWNGKRFTVVDTGGWDPRA 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             +     ++    ++ AD+I+ + +          +   I    +   I +  K D   
Sbjct: 71  SGLGASITRQAEYAMKTADVIVFVVDSQVGATDTDLAAARILRRSDRPVILVANKVDDER 130

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + +   +           +S+  G    +L++ +   +    ++   
Sbjct: 131 SESNAAELWSLGLGEPQPVSALHGRASGDLLDLVLEAVPEAPREQEE 177



 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 114/312 (36%), Gaps = 36/312 (11%)

Query: 97  EELAKMPNLRLANPGEFSRRAFENGKIDLLEAES---LADLISSETEMQR-----RLSME 148
           E L       + + G +  RA   G     +AE     AD+I    + Q       L+  
Sbjct: 50  EALWNGKRFTVVDTGGWDPRASGLGASITRQAEYAMKTADVIVFVVDSQVGATDTDLAAA 109

Query: 149 GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHIS 208
            +            +K+   RS   A   +S         S         L + +   + 
Sbjct: 110 RILRRSDRPVILVANKVDDERSESNAAELWSLGLGEPQPVSALHGRASGDLLDLVLEAVP 169

Query: 209 QGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +    +    G + + ++G  N GKSSL N LAK + ++V  + GTT D +   + L G 
Sbjct: 170 EAPREQEEEGGPRRVALVGRPNVGKSSLLNRLAKDERSVVDSVAGTTVDPVDSIVTLGGE 229

Query: 268 LVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------SKKEIS--F 316
             +  DTAG+R   +    +E     RT   ++ A++ ++L   +       ++ I+   
Sbjct: 230 EWRFVDTAGLRRKVNTASGMEYYASLRTEAAIQAAEVAVVLLAADEVVSEQDQRVITQVI 289

Query: 317 PKNIDFIFIGTKSD---------LYSTYTEEYD-------HLISSFTGEGLEELINKIKS 360
                 +    K D         L      +           IS+ TG G+++L   ++ 
Sbjct: 290 EAGRALVIAFNKWDTLDEDRRHQLEREIERDLARVKWASRVNISALTGRGVDKLAQHLRE 349

Query: 361 ILSNKFKKLPFS 372
            L++   ++P +
Sbjct: 350 ALASWETRVPTA 361


>gi|28211641|ref|NP_782585.1| GTP-binding protein Era [Clostridium tetani E88]
 gi|75541993|sp|Q892S2|ERA_CLOTE RecName: Full=GTPase Era
 gi|28204083|gb|AAO36522.1| GTP-binding protein era [Clostridium tetani E88]
          Length = 295

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 91/216 (42%), Gaps = 28/216 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ I ++G  N GKS+L N + K+ ++IV+  P TTR+ +   L  E   +   DT G
Sbjct: 3   KSGF-ITVIGRPNVGKSTLLNNIMKEKLSIVSHKPQTTRNNIQTILTQEDCQIVFVDTPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIGT 327
           + +    + +  +K     ++  D++L +          ++   +++   K      I  
Sbjct: 62  MHKPKHKLGEYMVKVAEEALKGVDIVLFMTTPEGQLGRGDVYILEQLKRIK-QPVFLIVN 120

Query: 328 KSD---------LYSTYTEEYDHL-----ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D             Y + Y        IS+   + ++ L+  +K  L    K  P  +
Sbjct: 121 KIDENDQGKVAETLKNYHDAYPFFKEIIPISASKDKNVDTLLELMKKYLPEGPKYYPEDM 180

Query: 374 PSHKRHLYHLSQTVRYLEMASLNE---KDCGLDIIA 406
            + ++  + +++ +R   +  L+E       ++++ 
Sbjct: 181 ITDQQERFIVAEIIREKALRLLSEEVPHGIAVEMMT 216


>gi|94676730|ref|YP_588490.1| GTP-binding protein EngA [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|166224308|sp|Q1LU74|DER_BAUCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|94219880|gb|ABF14039.1| GTP-binding protein EngA [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 472

 Score = 98.0 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 27/189 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G SN GKS+L N+   ++  +V D+PGTTRD   I +        + DTAG+R+
Sbjct: 188 IKLAIVGSSNVGKSTLANSFLGEERVVVFDMPGTTRDSTYIPMIRAEREYVLIDTAGLRK 247

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
                DI EK    +T   +E ++++LL+ + +   S +++S           F+ +  K
Sbjct: 248 RSKITDIAEKLSTVKTLQSIEESNVVLLVLDAHKGISDQDLSLLSLIIDSGRAFVIVVNK 307

Query: 329 SD----------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D                  S       H IS+  G  ++++   +        K++  +
Sbjct: 308 WDNLSIERRNSIKDTLAYRLSFINFARIHFISALYGTNIDQIFQSVNEAYHCSTKRISTA 367

Query: 373 IPSHKRHLY 381
           + +   H+ 
Sbjct: 368 LLTKILHIA 376



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 67/180 (37%), Gaps = 18/180 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L   + AIV D  G TRD        + Y   + DT GI  + 
Sbjct: 5   IALVGRPNVGKSTLFNKLTHTNDAIVADYSGLTRDRKYGHAKWKNYNFIVIDTGGIGISK 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYS 333
             +    IK++ L ++ AD+I  + +  +   I                  I  K D   
Sbjct: 65  KGLAIHIIKQSLLAIKEADVIFFVVDAITGLMIEDQSIAKYLRKLQKPTFIIINKIDGID 124

Query: 334 ---------TYTEEYDHLISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHL 383
                             I++  G G+  L+  +  S++ N       S     +++  L
Sbjct: 125 ITQVKLQFYAINIGQIFPIAALQGRGINILLKAVFLSLIQNNIPLTNNSFTESTKYIDQL 184


>gi|260893107|ref|YP_003239204.1| small GTP-binding protein [Ammonifex degensii KC4]
 gi|260865248|gb|ACX52354.1| small GTP-binding protein [Ammonifex degensii KC4]
          Length = 425

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 93/242 (38%), Gaps = 36/242 (14%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++    G+ +     I + G  NAGKSSL NAL  ++VAIV+D+PGTT D +   +++  
Sbjct: 3   LNTTPRGQRL----HIALFGRRNAGKSSLINALTGQEVAIVSDVPGTTTDPVAKAMEILP 58

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPK--- 318
              V I DTAGI +  ++     +K++F  +   DL LL+ +        +E    +   
Sbjct: 59  LGPVMIIDTAGIDDVGELGALR-VKKSFEVLNRTDLALLVIDPGRGFGPYEEEVLKRCEE 117

Query: 319 -NIDFIFIGTKSDLYSTYTEE--------YDHLISSFTGEGLEELINKIKSILSNKFK-- 367
             +  + +  K DLY                  +S+ T +G+EEL   I       +   
Sbjct: 118 YKVPVVTVINKIDLYPEVVRNGLGVELASPKVFVSALTRQGIEELKQVIIQHAPKDWTMP 177

Query: 368 -------KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE-----NLRLASVS 415
                  +    +           +    L    +       D +A       L+ A   
Sbjct: 178 TIVGDLIQPGDLVVLVIPIDKAAPKGRLILPQQQVIRDIIDHDAVAIMVKERELKHALSH 237

Query: 416 LG 417
           LG
Sbjct: 238 LG 239


>gi|224024977|ref|ZP_03643343.1| hypothetical protein BACCOPRO_01708 [Bacteroides coprophilus DSM
           18228]
 gi|224018213|gb|EEF76211.1| hypothetical protein BACCOPRO_01708 [Bacteroides coprophilus DSM
           18228]
          Length = 397

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 20/176 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  ++ A+V+++ GTT D +   +++ G       DTAG
Sbjct: 11  NRIHIGLFGKRNSGKSSLINALTGQETALVSEVAGTTTDPVYKPMEIHGLGPCVFIDTAG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-KEINSKKEISFP-----KNIDFIFIGTKSD 330
           + +  D+     I++T   +E  D+ LL+ ++     E+ +      KNI  I++  ++D
Sbjct: 71  LDDEGDLGALR-IRQTLKAMERTDIALLVCRDEQIGPEMEWAGQLKEKNIPTIWVLNQAD 129

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                            +   + S+   +G+++++  +   L +    +   I  H
Sbjct: 130 KLEDPLATARAIEKKCGQVPLIASALNRQGMDDILRTLVHKLPDA--SMEKGIVGH 183


>gi|122702313|emb|CAL88347.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L  + V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGVPKSFNISVSHNRGISALIDAVLNALN 167


>gi|25028117|ref|NP_738171.1| GTP-binding protein EngA [Corynebacterium efficiens YS-314]
 gi|259507174|ref|ZP_05750074.1| ribosome-associated GTPase EngA [Corynebacterium efficiens YS-314]
 gi|23493401|dbj|BAC18371.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259165255|gb|EEW49809.1| ribosome-associated GTPase EngA [Corynebacterium efficiens YS-314]
          Length = 552

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 86/233 (36%), Gaps = 33/233 (14%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
               S +       + + I     +    + I  G + + ++G  N GKSSL N  A ++
Sbjct: 251 PFPVSAQHGRGGADVLDKILESFPEEPRAKSIVEGPRRVALVGKPNVGKSSLLNKFAGEE 310

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENAD 300
            ++V ++ GTT D +   + L+  + K  DTAG+R+        E     RT   +++A+
Sbjct: 311 RSVVDNVAGTTVDPVDSIIQLDQKMWKFIDTAGLRKKVKTATGHEFYASLRTRSVIDSAE 370

Query: 301 LILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS-----TYTEEYD------- 340
           + +LL + +        +            +    K DL           E D       
Sbjct: 371 VCVLLIDSSEPITEQDQRVLAMITDAGKALVVAFNKWDLMDEDRRWELDRELDLQLAHIP 430

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                 IS+ TG  L+ L   +   L N  +++     ++      L + +  
Sbjct: 431 WAKRINISAKTGRALQRLEPAMIEALENWDRRVSTGQLNNW-----LREAIAA 478



 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 18/173 (10%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +  E +      + I+G  N GKS+L N    +  A+V D PG TRD ++   D  G   
Sbjct: 104 ERREHLEESLCTVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLSDWGGQRF 163

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NID 321
            + DT G       +      +  L + +AD+I+ + +    I     +   K    ++ 
Sbjct: 164 WVQDTGGWDPNVKGIHASIAHQAELAMASADVIVFVVDTKVGITETDAVMARKLKRADVP 223

Query: 322 FIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
            I +  K D  S + +  +           +S+  G G  ++++KI      +
Sbjct: 224 VILVANKFDSDSQWADMAEFYALGLGDPFPVSAQHGRGGADVLDKILESFPEE 276


>gi|325678850|ref|ZP_08158448.1| hydrogenase maturation GTPase HydF [Ruminococcus albus 8]
 gi|324109354|gb|EGC03572.1| hydrogenase maturation GTPase HydF [Ruminococcus albus 8]
          Length = 396

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 16/177 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LE 265
           ++    GE +  G+     G  NAGKSS+ NA   +++AIV+D PGTT D +   ++ L 
Sbjct: 3   LNDTPSGERVHIGF----FGRRNAGKSSVVNAFTNQELAIVSDTPGTTTDPVYKAMELLP 58

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFP 317
              V I DT G  +  ++ E   +K+T   +   D  +L+ +   +         E+   
Sbjct: 59  MGPVMIIDTPGYDDEGELGELR-VKKTVQVLGKTDCAVLVTDCTRELDDSEKQLTELFVQ 117

Query: 318 KNIDFIFIGTKSDLYSTYTEE--YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           K I +I    KSDL  +  +    +  +S+     + EL   +  + + K ++ P  
Sbjct: 118 KKIPYIIAKNKSDLLESVPQAGSNEIYVSALNKTNINELRELVGRLSNVKEQEDPLV 174


>gi|160933846|ref|ZP_02081234.1| hypothetical protein CLOLEP_02708 [Clostridium leptum DSM 753]
 gi|156867723|gb|EDO61095.1| hypothetical protein CLOLEP_02708 [Clostridium leptum DSM 753]
          Length = 396

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NA+  ++ A+V+D  GTT D +   +++ G     + DTAG
Sbjct: 10  NRVHIGLYGKRNSGKSSLINAITNQETALVSDFAGTTTDPVYKAMEIHGIGPCMLIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE---INSKKE---ISFPKNIDFIFIGTKSD 330
             +  ++     +++T   +E  D+ +L+ +   +  +KE   +   K    + +  K D
Sbjct: 70  FDDEGELGRLR-VEKTRQALEKTDIAVLVFDGRPVTEEKEWLSLLKQKKTPILAVVNKLD 128

Query: 331 LYSTYTEEYD----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L        D           L+S+ T EG++++  ++  +L   +++   +
Sbjct: 129 LLENPQAYADTLKRDYGLSPVLVSTKTREGIDKVREELIRLLPEDYEQESIT 180


>gi|229543819|ref|ZP_04432878.1| GTP-binding protein Era [Bacillus coagulans 36D1]
 gi|229324958|gb|EEN90634.1| GTP-binding protein Era [Bacillus coagulans 36D1]
          Length = 302

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ I I+G  N GKS+  N +  + +AI++D P TTR+ +      +   +   DT 
Sbjct: 6   YKSGF-ISIIGRPNVGKSTFINQVVGQKIAIMSDKPQTTRNKIQGVYTADDAQMIFIDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGT 327
           GI +    +    +K     ++  DLIL +     K+       I   K+       +  
Sbjct: 65  GIHKPKHKLGDFMVKSATDTLKEVDLILFMVNAEEKRGRGDEYIIELLKHVRTPVFLVIN 124

Query: 328 KSDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL            Y + Y       IS+  G  +  L++ IK+ L    +  P    
Sbjct: 125 KIDLVHPDDLLAFIEQYKDLYPFREVVPISALGGNNVSRLLDTIKAYLPEGPQYYPADQV 184

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           +     + +S+ +R   +    E+
Sbjct: 185 TDHPERFIISELIREKALQLTREE 208


>gi|122702181|emb|CAL88281.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN L+++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  VLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|42520904|ref|NP_966819.1| GTP-binding protein EngA [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410645|gb|AAS14753.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 441

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 17/185 (9%)

Query: 167 HIRSFIEADLDFSEEEDV--QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN----GY 220
              S    ++D+ +  D     + S E    ++ L + ++  I        + N      
Sbjct: 117 KCESHKSENVDYLQFFDFLGPVYISAEHNLGMVDLYDALAGVIENFNENTELPNNELSRL 176

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I I+G  N GKS+  N L  ++  I +  PGTTRD + I  D +G L+ + DTAGIR  
Sbjct: 177 RIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRK 236

Query: 281 D---DIVEKEGIKRTFLEVENADLILLLKE----INSKK----EISFPKNIDFIFIGTKS 329
               D +E   ++++   ++ + +++L+ +    I  +     E +       I +  K 
Sbjct: 237 ANVVDGLESRFVEKSMESIKRSHVVVLMLDSLVGIEQQDLSIGEAAIKGGKGIIVVLNKW 296

Query: 330 DLYST 334
           DL   
Sbjct: 297 DLIGK 301



 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 17/180 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  NAGKS+LFN L  +  A+V++IPG TRD       +     K+ DT G  +
Sbjct: 2   LKIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKVIDTGGWND 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDL 331
             +    + I++    + N+++I  L +   + E        +    N   I +  K + 
Sbjct: 62  QTNFSL-QVIEQIEFSLSNSNIIFFLVDAKVQNERNEEFAKWLKRKINKPVILVANKCES 120

Query: 332 YSTYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           + +   +Y           IS+    G+ +L + +  ++ N  +          R    +
Sbjct: 121 HKSENVDYLQFFDFLGPVYISAEHNLGMVDLYDALAGVIENFNENTELPNNELSRLRIAI 180


>gi|122702429|emb|CAL88405.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  G TRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGATRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|88855492|ref|ZP_01130156.1| GTP-binding protein EngA [marine actinobacterium PHSC20C1]
 gi|88815399|gb|EAR25257.1| GTP-binding protein EngA [marine actinobacterium PHSC20C1]
          Length = 506

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ILG  N GKSSL N  A ++  +V ++ GTTRD +   ++L G   +  DTAGIR  
Sbjct: 246 RVAILGRPNVGKSSLLNKTAGEERVVVNELAGTTRDPVDEQIELGGKFWRFVDTAGIRRR 305

Query: 281 DDIVE---KEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKS 329
             + +        RT   +E A++ +++ +++           ++        +    K 
Sbjct: 306 VALAQGADFYATLRTSAALEKAEVAVVIFDVSQPLSVQDLKIVDLVLESGRALVLAFNKW 365

Query: 330 DLYST-----YTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL           E D             IS+ TG  +E+L+  ++  L +   ++P  
Sbjct: 366 DLLDDERRDLLEREIDKDLGHVSWAPRVNISAKTGRHMEKLVPALELALESWDTRIPTG 424



 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD +    +       I DT G     
Sbjct: 73  LAIVGRPNVGKSALVNRIIGRREAVVEDTPGVTRDRVNYKAEWNNRHFTIVDTGGWEPDA 132

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD 330
             ++     +  + ++ AD +L + +              +    N   I +  K D
Sbjct: 133 KGIDASVAAQAEIAIDLADAVLFVVDATVGPTSTDEHVVRMLRATNKPVILVANKVD 189


>gi|89054660|ref|YP_510111.1| GTP-binding protein EngA [Jannaschia sp. CCS1]
 gi|122498632|sp|Q28QC6|DER_JANSC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|88864209|gb|ABD55086.1| Small GTP-binding protein domain [Jannaschia sp. CCS1]
          Length = 479

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 20/159 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  + +A+V D PG TRD+      L      + DTAG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGRKLALVDDQPGVTRDLREGAARLADLRFTVIDTAGLED 62

Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS- 329
             DD +E    + T   V  AD  L + +  +          +I        +    K+ 
Sbjct: 63  ANDDSLEGRMRRLTERAVSMADATLFVMDARAGVTTNDLVFADILRKSGRPVVLAANKAE 122

Query: 330 ---------DLYSTYTEEYDHLISSFTGEGLEELINKIK 359
                    D YS    E    +S+  GEG+ +L+  ++
Sbjct: 123 GNAGQSGLLDAYSLGLGE-PLALSAEHGEGMADLVQVLR 160



 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 31/196 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I ++G  NAGKS+L N +  +D  +     G TRD + +  + +   ++I DTAG+R+
Sbjct: 191 LQIAVVGRPNAGKSTLINQIIGEDRLLTGPEAGITRDAIGLTFEWDDVPMRIFDTAGMRK 250

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      V+ A+++++L +     E        ++  +    +    K
Sbjct: 251 RAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFESQDLRIADLAEREGRAVVIAVNK 310

Query: 329 SD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D                  L           +S+ TG+GL++L   I  I +    ++ 
Sbjct: 311 WDVEPEKQQKLKDLRVGLERLLPQLRGAPLVTVSAKTGKGLDKLHAAIMKIHATWNTRIS 370

Query: 371 FSIPSHKRHLYHLSQT 386
                  + L  + + 
Sbjct: 371 T--ARLNQWLAAMIEA 384


>gi|225631062|ref|ZP_03787800.1| GTP-binding protein [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591242|gb|EEH12386.1| GTP-binding protein [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 441

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 11/170 (6%)

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
            DF     +    +  +++    L   I +     +L     +  +I I+G  N GKS+ 
Sbjct: 132 FDFLGPVYISAEHNLGMVDLYDALAGVIENFNENTELPNNELSRLRIAIIGRPNVGKSTF 191

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRT 292
            N L  ++  I +  PGTTRD + I  D +G L+ + DTAGIR      D +E   ++++
Sbjct: 192 LNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRKANVVDGLESRFVEKS 251

Query: 293 FLEVENADLILLLKE----INSKK----EISFPKNIDFIFIGTKSDLYST 334
              ++ + +++L+ +    I  +     E +       I +  K DL   
Sbjct: 252 MESIKRSHVVVLMLDSLVGIEQQDLSIGEAAIKGGKGIIVVLNKWDLIGK 301



 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 17/180 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  NAGKS+LFN L  +  A+V++IPG TRD       +     K+ DT G  +
Sbjct: 2   LKIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKVIDTGGWND 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDL 331
             +    + I++    + N+++I  L +   + E        +    N   I +  K + 
Sbjct: 62  QTNFSL-QVIEQIEFSLSNSNIIFFLVDAKVQNERNEEFAKWLKRKINKPVILVANKCES 120

Query: 332 YSTYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           + +   +Y           IS+    G+ +L + +  ++ N  +          R    +
Sbjct: 121 HKSENVDYLQFFDFLGPVYISAEHNLGMVDLYDALAGVIENFNENTELPNNELSRLRIAI 180


>gi|37523991|ref|NP_927368.1| GTP-binding protein Era [Gloeobacter violaceus PCC 7421]
 gi|35214997|dbj|BAC92363.1| glr4422 [Gloeobacter violaceus PCC 7421]
          Length = 304

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 25/215 (11%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            I +   G   R+G+ + I+G  N GKS+L N L  + VAIV+    TTR+ L   L L 
Sbjct: 2   IIPEAPPG--FRSGF-VAIVGRPNVGKSTLVNRLVGEKVAIVSPTAQTTRNRLRGILTLP 58

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------- 317
              + + DT GI +    + +  +        +AD I+L+ + + +              
Sbjct: 59  TAQIILVDTPGIHKPQHRLGEVLVHNARSAAGSADGIVLVVDGSVEAGAGDRFIAESLKG 118

Query: 318 KNIDFIFIGTKSDLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILS 363
                  +  K D  S    E                + IS+  G G+E L+  I S L 
Sbjct: 119 SKAPVWPVLNKVDRRSRNQVEPIRESYRKLFDPELVFYEISALKGSGIEPLMESIISSLP 178

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                 P  + + +   + + + VR   + +  E+
Sbjct: 179 EGPYYYPPDLFTDQPERFIMGELVREQVLLATREE 213


>gi|310828944|ref|YP_003961301.1| hypothetical protein ELI_3378 [Eubacterium limosum KIST612]
 gi|308740678|gb|ADO38338.1| hypothetical protein ELI_3378 [Eubacterium limosum KIST612]
          Length = 397

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  N+GKSSL NAL  + +A+V+D+ GTT D +   +++ G       DTAG
Sbjct: 10  NRLHIGIYGKRNSGKSSLINALTGQKIALVSDVAGTTADPVYKYMEIHGIGPCMFIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK-EINSKKEISFP-----KNIDFIFIGTKSD 330
             +  ++ E   + +T   ++  D+ L++  + ++++E ++      +N   I I  KSD
Sbjct: 70  FDDIGELGEMR-VGQTRKAMDKTDIALIVWGDTHTEEEYNWIDAFKKRNTPVIPIINKSD 128

Query: 331 L----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +                    ++S+ T EG++ +   +   L    +    +
Sbjct: 129 ILTDIELLASEIKARLGVPPLIVSAKTKEGMDRIREALIRSLPKDHEAESIT 180


>gi|227498485|ref|ZP_03928631.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903943|gb|EEH89861.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 405

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 19/173 (10%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           ++S +++    E +  G    + G  NAGKSSL NAL  +D++IV+D  GTT D ++  +
Sbjct: 1   MASSLNETPAAERVHIG----LFGCRNAGKSSLINALTGQDLSIVSDFKGTTTDPVSKAM 56

Query: 263 DLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK 318
           ++     V I+DT G+ +   + EK  +K+    + + D+ LL+ +     S+ +    K
Sbjct: 57  EILPLGPVLITDTPGLDDEGALGEKR-VKKARFVLRSTDIALLVVDAALGLSEADQRLLK 115

Query: 319 -----NIDFIFIGTKSDLYST---YTEEYDH--LISSFTGEGLEELINKIKSI 361
                 + ++ I  K D+YS       E DH   +S+ T EG+ EL  ++  +
Sbjct: 116 EFKERKVPYLLIVNKIDIYSAPLLPQAEKDHLLFVSAQTHEGITELKERLSRM 168


>gi|15672333|ref|NP_266507.1| GTP-binding protein Era [Lactococcus lactis subsp. lactis Il1403]
 gi|125623240|ref|YP_001031723.1| GTP-binding protein Era [Lactococcus lactis subsp. cremoris MG1363]
 gi|281490898|ref|YP_003352878.1| GTP-binding protein Era [Lactococcus lactis subsp. lactis KF147]
 gi|61223689|sp|P0A3C1|ERA_LACLA RecName: Full=GTPase Era
 gi|61223690|sp|P0A3C2|ERA_LACLM RecName: Full=GTPase Era
 gi|8163994|gb|AAF73946.1|AF233268_1 GTP-binding protein Era [Lactococcus lactis subsp. cremoris MG1363]
 gi|12723220|gb|AAK04449.1|AE006272_3 GTP-binding protein Era [Lactococcus lactis subsp. lactis Il1403]
 gi|124492048|emb|CAL96976.1| GTP-binding protein era homolog [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281374656|gb|ADA64176.1| GTP-binding protein Era [Lactococcus lactis subsp. lactis KF147]
 gi|300069990|gb|ADJ59390.1| GTP-binding protein Era [Lactococcus lactis subsp. cremoris NZ9000]
 gi|326405932|gb|ADZ63003.1| GTP-binding protein Era [Lactococcus lactis subsp. lactis CV56]
          Length = 303

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D P TTR+ +      E   +   DT GI +  
Sbjct: 11  VAILGRPNVGKSTFMNHVMGQKIAIMSDKPQTTRNKIQGIYTTENEQIVFIDTPGIHKPH 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSD--- 330
           + +    ++  +  +   D++L +   +  +       I   K   +  I +  K D   
Sbjct: 71  NALGDFMVQSAYSTLRECDVVLFMVAADEPRSTGENMIIERLKKAEVPVILVVNKIDKIH 130

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 + + YT + +      IS+  G   E LI+ +   L    +  P    +     
Sbjct: 131 PDRLFEIVADYTSQMEFSEVVPISAKQGNNTERLIDTLSEKLDEGPQYFPEDQITDHPER 190

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 191 FLVSEMIR 198


>gi|257470080|ref|ZP_05634172.1| GTP-binding protein Era [Fusobacterium ulcerans ATCC 49185]
 gi|317064304|ref|ZP_07928789.1| GTP binding protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689980|gb|EFS26815.1| GTP binding protein [Fusobacterium ulcerans ATCC 49185]
          Length = 297

 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+L        DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNLNNNQYIFIDTPGIHKAK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
            ++ +         +++ D+IL L + + +         + +   K    I +  K D  
Sbjct: 66  HLLGEYMTNSAIRVLKDVDVILFLLDGSQEISTGDQFVMERVMEAKKTPRILVINKIDKL 125

Query: 333 S-----TYTEEYDHLISSFTGE---------GLEELINKIKSILSNKFKKLPFSIPSHKR 378
           S        EE    +  F G          GL  L+  I+  +    K  P  + +   
Sbjct: 126 SDEQLAAKREEVKEKLGEFDGIVEISGQYAFGLPRLLEAIEPFMEEGIKYYPDDMYTDMS 185

Query: 379 HLYHLSQTVR 388
               +++ VR
Sbjct: 186 VYKIITEIVR 195


>gi|189467139|ref|ZP_03015924.1| hypothetical protein BACINT_03523 [Bacteroides intestinalis DSM
           17393]
 gi|189435403|gb|EDV04388.1| hypothetical protein BACINT_03523 [Bacteroides intestinalis DSM
           17393]
          Length = 393

 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 17/171 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D  IV+  PGTT D +T  +++       + DT G
Sbjct: 8   NRLHIALFGRRNSGKSSLVNALTGQDTVIVSPTPGTTTDPVTKAMEIHPLGPCLLIDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSDL 331
             +  ++ E   ++ T   +   D+ LLL E    +E  +      + I  I +  K+D 
Sbjct: 68  FDDEGELGEMR-VECTLKIIGKTDIALLLCETGDAQEQEWLQRLKERGIPVILLLNKADA 126

Query: 332 YSTYTE----------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               TE          +   +IS+  G G+E +   I   L   F +   +
Sbjct: 127 RPNTTELAEQIKASCGQPPIIISAKDGTGIEAIHRAILEKLPADFGEQTIT 177


>gi|183220801|ref|YP_001838797.1| GTP-binding protein EngA [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189910901|ref|YP_001962456.1| GTP-binding protein EngA [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775577|gb|ABZ93878.1| GTPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779223|gb|ABZ97521.1| GTP-binding protein EngA [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 450

 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 11/148 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           KI I+G  N+GKSSL N       A+V+++PGTTRD ++     + + ++I DTAGIR  
Sbjct: 183 KIAIIGKPNSGKSSLLNTFLGYKRAVVSEVPGTTRDSVSDQFFFQNHKLEIIDTAGIRRK 242

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKS 329
            +T + +E    KRT   +  AD+++LL +          K            I    K 
Sbjct: 243 SKTGESLEFYSYKRTLHSLGEADVVVLLVDAMKGLGEFDKKIFGEIQELGKPMIVAVNKW 302

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINK 357
           DL                   L  L  +
Sbjct: 303 DLVPEKESNSWKDYKDRMEAKLSILKER 330



 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 19/148 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIR- 278
           + I+G  N GKS+LFNA+ +   AI  +  G TRDVL   ++         +SDT G+  
Sbjct: 7   VTIVGRQNVGKSTLFNAILRAQSAITENTAGVTRDVLQKTVERAEFKIPFTLSDTPGLDI 66

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE-----------INSKKEISFPKNIDFIFIGT 327
           E  D + KE I+  F  + ++DLIL + +           I+  K+    K  + + +  
Sbjct: 67  ENIDEISKEIIEIAFEHLRHSDLILHVIDHKDLRKYDYKLIDYFKKDEILKEKNVLTLIN 126

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEELI 355
           K D     TE+ ++ +  F   GL EL+
Sbjct: 127 KVD-----TEQDEYDLEPFYTLGLNELL 149


>gi|122702177|emb|CAL88279.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ +  
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|302550423|ref|ZP_07302765.1| ribosome-associated GTPase EngA [Streptomyces viridochromogenes DSM
           40736]
 gi|302468041|gb|EFL31134.1| ribosome-associated GTPase EngA [Streptomyces viridochromogenes DSM
           40736]
          Length = 498

 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 82/211 (38%), Gaps = 23/211 (10%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D     D +     E+  +  F   D+   I +   G +      + ++G  N GKS+L 
Sbjct: 20  DHGALGDAEYTEFMELAVEEGFDLEDVEGAIEEAGHGPL----PVLAVVGRPNVGKSTLV 75

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N +  +  A+V D PG TRD +T + +  G   K+ DT G  +    ++     +    +
Sbjct: 76  NRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDVLGIDASVAAQAEYAI 135

Query: 297 ENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD----------LYSTYTEE 338
           + AD ++ + +          +   +        +    K D          L+S    E
Sbjct: 136 DAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGQSGEADATYLWSLGLGE 195

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             + +S+  G G  ++++++  +L    ++ 
Sbjct: 196 -PYPVSALHGRGTGDMLDQVLEVLPEAPRET 225



 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 82/206 (39%), Gaps = 31/206 (15%)

Query: 198 FLKNDISSHISQGKLG----EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
            + + +   + +          I    +I ++G  N GKSSL N +A ++  +V ++ GT
Sbjct: 209 DMLDQVLEVLPEAPRETFGGGGIGGPRRIALIGRPNVGKSSLLNKVANEERVVVNELAGT 268

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINS 310
           TRD +   ++L G   K  DTAGIR+   + +        RT   VE A++ ++L + + 
Sbjct: 269 TRDPVDELIELGGVTWKFVDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVILIDASE 328

Query: 311 KKEI--------SFPKNIDFIFIGTKSDLYST----------------YTEEYDHLISSF 346
              +        +       +    K D                     T      +S+ 
Sbjct: 329 SISVQDQRIVTMAVEAGRAIVLAYNKWDTLDEERRYYLEREIETELGQVTWAPRVNVSAR 388

Query: 347 TGEGLEELINKIKSILSNKFKKLPFS 372
           TG  +E+L+  I++ L+    ++P  
Sbjct: 389 TGRHMEKLVPAIETALAGWETRVPTG 414


>gi|87301104|ref|ZP_01083945.1| GTP-binding protein Era [Synechococcus sp. WH 5701]
 gi|87284072|gb|EAQ76025.1| GTP-binding protein Era [Synechococcus sp. WH 5701]
          Length = 343

 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 79/215 (36%), Gaps = 38/215 (17%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  E  R+G+ + ++G  N GKS+L N L  + VAI + +  TTR+ L   L      + 
Sbjct: 30  QAPEGFRSGF-VALIGRPNVGKSTLLNHLVGEKVAITSPVAQTTRNRLRAILTTPSAQLV 88

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDF 322
           + DT GI +   ++ +  +K     +   D++LLL + +           E+        
Sbjct: 89  LLDTPGIHKPHHLLGERLVKSARSAIGEVDVVLLLVDGSEPAGRGDGFIVELLRFSRAPV 148

Query: 323 IFIGTKSDLYS-----------------------------TYTEEYDHLISSFTGEGLEE 353
           +    KSDL                                 ++      S+ TG G  E
Sbjct: 149 LVALNKSDLVDPERAAELEASYRELLVLSDQRADPADPGQRRSDWPLLACSASTGAGCPE 208

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           L+  + + L       P    S +     L++ +R
Sbjct: 209 LVEALAARLPLGPHLYPPDAVSDQPEQLLLAELIR 243


>gi|295398008|ref|ZP_06808064.1| GTP-binding protein Era [Aerococcus viridans ATCC 11563]
 gi|294973766|gb|EFG49537.1| GTP-binding protein Era [Aerococcus viridans ATCC 11563]
          Length = 332

 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 85/216 (39%), Gaps = 29/216 (13%)

Query: 200 KNDISSHI-SQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
             D+   +   G       +GYK   + I+G  N GKS+  N +  + VAI++D   TTR
Sbjct: 14  IEDLEKLLEDDGDQAGDDFDGYKSGFVAIVGRPNVGKSTFLNRVVGQKVAIMSDKAQTTR 73

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           + +      +   +   DT GI +  + + +   K  +  +E  D IL+L  +N+++ I 
Sbjct: 74  NKIQAVYTTDEAQIVFIDTPGIHKPHNELGEFMNKSAYQSLEEVDAILML--VNAEEPIG 131

Query: 316 FPKNIDFIFI----------GTKSD-------------LYSTYTEEYDHLISSFTGEGLE 352
                 F  I            K D             + S  + +    +S+  G  +E
Sbjct: 132 PGDKFVFEKIKNYKTRKFLGVNKIDKVSPEALAEFMQTIPSPESFDGIIPLSALNGNNVE 191

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            LI+ +  +L    +  P    +     + +S+ +R
Sbjct: 192 TLIDTLVDLLPTGPQYYPSEFITDHPEYFVVSELIR 227


>gi|254411028|ref|ZP_05024806.1| GTP-binding protein Era [Microcoleus chthonoplastes PCC 7420]
 gi|196182383|gb|EDX77369.1| GTP-binding protein Era [Microcoleus chthonoplastes PCC 7420]
          Length = 318

 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 24/203 (11%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           I Q   G   ++G+ + I+G  N GKS+L N L  + +AI + +  TTR+ L   L  + 
Sbjct: 18  IPQAPEG--FKSGF-VGIIGRPNVGKSTLMNELVGQKIAITSPVAQTTRNRLQGILTTDN 74

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPK 318
             +   DT GI +    + K  ++   + +E  D++L + +  +           +    
Sbjct: 75  AQLIFVDTPGIHKPHHQLGKVLVQNAKIAIEAVDVVLFVVDGATPAGGGDRYISNLLSQT 134

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLI-------------SSFTGEGLEELINKIKSILSNK 365
           +   I    KSDL S      +                S+ TG+GL  L  ++   L   
Sbjct: 135 STPVILGINKSDLQSPGKGLDEGYHQLADPHNWQVTKFSALTGDGLATLQEQLIDRLEQG 194

Query: 366 FKKLPFSIPSHKRHLYHLSQTVR 388
               P ++ + +   + + + +R
Sbjct: 195 PYYYPPNLVTDQPERFIMGELIR 217


>gi|229916327|ref|YP_002884973.1| GTP-binding protein Era [Exiguobacterium sp. AT1b]
 gi|229467756|gb|ACQ69528.1| GTP-binding protein Era [Exiguobacterium sp. AT1b]
          Length = 302

 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +      +   +   D
Sbjct: 4   EDFKSGF-VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVYTTDDSQIIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFI 325
           T GI +    +    +K     +   D IL +  +   +       I   K  +   I +
Sbjct: 63  TPGIHKPKHRLGDFMMKVATNALREVDAILFMVNVTEPRGAGDDFIIEKLKGLDTPIILV 122

Query: 326 GTKSDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL            YT E D      IS+  G  +E L+ +IK +L       P  
Sbjct: 123 MNKIDLIHPDELPKVIEQYTNELDFAAYVPISALQGNNVEPLLGEIKKLLPEGPMYYPAD 182

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +S+ +R
Sbjct: 183 QVTDHPERFIISEMIR 198


>gi|122701675|emb|CAL88227.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|253581692|ref|ZP_04858916.1| GTP binding protein [Fusobacterium varium ATCC 27725]
 gi|251836041|gb|EES64578.1| GTP binding protein [Fusobacterium varium ATCC 27725]
          Length = 297

 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+L        DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNLNDNQYIFIDTPGIHKAK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
            ++ +         +++ D+IL L + + +         + +   K    I +  K D  
Sbjct: 66  HLLGEYMTNSAIRVLKDVDVILFLLDGSQEISTGDQFVMERVMEAKKTPRILVINKIDKL 125

Query: 333 S------------TYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           S                E+D    IS     GL  L+  I+  +    K  P  + +   
Sbjct: 126 SDEQLVAKREEVKEKLGEFDAVVEISGQYAFGLPRLLEAIEPFMEEGIKYYPDDMYTDMS 185

Query: 379 HLYHLSQTVR 388
               +++ VR
Sbjct: 186 VYKIITEIVR 195


>gi|118462577|ref|YP_882247.1| GTP-binding protein EngA [Mycobacterium avium 104]
 gi|254775515|ref|ZP_05217031.1| GTP-binding protein EngA [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|166225825|sp|A0QH59|DER_MYCA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|118163864|gb|ABK64761.1| GTP-binding protein EngA [Mycobacterium avium 104]
          Length = 466

 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 105/267 (39%), Gaps = 31/267 (11%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +  L+ + T  +    +   SG+   L    +D     ++  +A + +S      +  S 
Sbjct: 116 VDALVGATTADEAAARILLRSGKPVFLAANKVDS---DKAEADAAMLWSLGLGEPHPISA 172

Query: 191 EVLNDILFLKNDISSHISQ-GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
                +  L +++ + + +  ++        ++ ++G  N GKSSL N LA    ++V D
Sbjct: 173 MHGRGVADLLDEVLAALPEVSEVAPRPGGPRRVALVGKPNVGKSSLLNKLAGDQRSVVHD 232

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLK 306
           + GTT D +   ++L   + +  DTAG+R         E     RT   ++ A+++++L 
Sbjct: 233 VAGTTVDPVDSLIELGDRVWRFVDTAGLRRKVGQASGHEFYASVRTHSAIDAAEVVIVLI 292

Query: 307 EINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHL 342
           + ++           +        +    K DL      E                    
Sbjct: 293 DASAPLTEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRELLEREIDRELVQLRWAPRVN 352

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL 369
           IS+ TG  + +L+  +++ L++   ++
Sbjct: 353 ISAKTGRAVAKLVPAMETALASWDTRI 379



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 17/162 (10%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  N GKS+L N +  +  A+V D+PG TRD ++ D    G    + DT G       ++
Sbjct: 36  GRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWTGRRFVVQDTGGWEPDAKGLQ 95

Query: 286 KEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
           +   ++  + +  AD ++L+ +          +   I             K D      +
Sbjct: 96  QLVAEQASVAMRTADAVILVVDALVGATTADEAAARILLRSGKPVFLAANKVDSDKAEAD 155

Query: 338 EY---------DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                       H IS+  G G+ +L++++ + L    +  P
Sbjct: 156 AAMLWSLGLGEPHPISAMHGRGVADLLDEVLAALPEVSEVAP 197


>gi|312128379|ref|YP_003993253.1| small gtp-binding protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311778398|gb|ADQ07884.1| small GTP-binding protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 403

 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 19/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSSL NA+  + +AIV+D+PGTT D +   +++     V + DTAG
Sbjct: 8   ERLHIAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKSMEILPLGPVVLIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK----EINSKKEISF---PKNIDFIFIGTKS 329
           I + + I+ K  +++T   +   D+ +L+     ++  +K+++     K +  I +  K 
Sbjct: 68  IDD-EGILGKLRVEKTLEVLNKTDIAILVVSDIDDLTYEKQLAALFDEKKVPRIGVLNKI 126

Query: 330 DLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKL 369
           D    Y E+   L           S  T +G++EL N +  ++ +  + L
Sbjct: 127 DKDPNYKEKLSFLQSTLGMPFLAVSCVTLKGIDELKNALSKLVPDVGEDL 176


>gi|225156498|ref|ZP_03724833.1| small GTP-binding protein [Opitutaceae bacterium TAV2]
 gi|224802927|gb|EEG21174.1| small GTP-binding protein [Opitutaceae bacterium TAV2]
          Length = 526

 Score = 97.6 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 16/142 (11%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +++ +  +   +   +  +G  N GKSSL N L + D  IV+++PGTTRD + +     G
Sbjct: 187 VTKFENAKTSADPLCVCFIGRPNVGKSSLGNRLLQSDRLIVSNVPGTTRDAVELPFTFRG 246

Query: 267 -----YLVKISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKEI--------NS 310
                +   + D  GI+        VE     R+   ++ AD++ L+ +          +
Sbjct: 247 REHKEHPFLLIDIGGIKAATKLASPVEYFSRLRSLDAIQRADVVFLVLDALDGVTQQDKA 306

Query: 311 KKEISFPKNIDFIFIGTKSDLY 332
               +  +    I +  K DL 
Sbjct: 307 IAGEAVKERKPIIVVVNKWDLV 328



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 19/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279
           + I+G  N GKS LFN LA++ ++IV D PG TRDV++  +    Y +  +   G++  E
Sbjct: 5   VAIVGRPNVGKSRLFNRLARRRISIVHDQPGVTRDVISTQIASGAYTLLDTGGLGLKGGE 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE-------INSKKEISFPK-NIDFIFIGTKSDL 331
           T   +     ++    ++ +DLIL + +       ++S+      K   + + +  K+D 
Sbjct: 65  TTAELTAASERQVDFAIDTSDLILFVVDGLDGITALDSRIAQKLRKSKKEVLLVVNKADF 124

Query: 332 YSTYTE---------EYDHLISSFTGEGLEELINKIKSIL 362
                +              IS+  G G  EL   I   L
Sbjct: 125 NDDKVDLAEAYRLGLGDPVRISAEHGNGEPELRTAILDRL 164


>gi|157828030|ref|YP_001494272.1| GTP-binding protein Era [Rickettsia rickettsii str. 'Sheila Smith']
 gi|157800511|gb|ABV75764.1| GTP-binding protein Era [Rickettsia rickettsii str. 'Sheila Smith']
          Length = 339

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 20/161 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E
Sbjct: 53  VSVCIIGQPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFE 112

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE-INSKKEISF-------PKNIDFIFIGTKSDL 331
               +EK  ++  +  + +ADL+LL+ + + S  +I+          NI  IF+  K D+
Sbjct: 113 PKGSLEKVMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIIPIFLLNKIDI 172

Query: 332 YSTYTEEYD------------HLISSFTGEGLEELINKIKS 360
            S Y  +                IS+ +G+ ++ L+  I S
Sbjct: 173 ESKYLNDIKAFLTENYPDSLLLPISALSGKNIDGLLEYITS 213


>gi|300781237|ref|ZP_07091091.1| ribosome-associated GTPase EngA [Corynebacterium genitalium ATCC
           33030]
 gi|300532944|gb|EFK54005.1| ribosome-associated GTPase EngA [Corynebacterium genitalium ATCC
           33030]
          Length = 506

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 33/212 (15%)

Query: 197 LFLKNDISSHI-SQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
             + ++I      + K    +  G + + ++G  N GKSSL N L++ D A+V ++ GTT
Sbjct: 220 ADVLDEIVKSFPEEPKSANSVTEGPRRVALVGKPNVGKSSLLNKLSRADRAVVDNVAGTT 279

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            D +   + L+  L +  DTAG+R+     +  E     RT   ++ A++ ++L + +  
Sbjct: 280 VDPVDELIQLDQKLWRFIDTAGLRKKVKNAEGHEYYASLRTRGTIDAAEVCVVLIDAS-- 337

Query: 312 KEISFPKNIDFIFIG----------TKSDLYST-----YTEEYD-----------HLISS 345
           +EI+         +            K DL        +  E+D             IS+
Sbjct: 338 QEITEQDQRVISMVLDAGKAMVIAFNKWDLMDEDRRYYFDREFDMQLDHLPWVSKINISA 397

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            TG GL  L  ++ + L N  K++     ++ 
Sbjct: 398 ETGRGLHRLEKEMTTALENWDKRISTGQLNNW 429



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 75/195 (38%), Gaps = 17/195 (8%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            ++         G +      + I+G  N GKS+L N    +  A+V D PG TRD ++ 
Sbjct: 52  AEVEEAFGVTADGHLEEALPTVAIVGRPNVGKSTLVNRFLGRREAVVEDHPGVTRDRVSY 111

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP 317
             D  G    + DT G       +      ++   + +AD+I+++ + +   ++ +    
Sbjct: 112 LSDWNGQRFWVQDTGGWDPDAKGIHASIAHQSEAAMADADIIVMVVDSHVGVTESDAVMA 171

Query: 318 KN-----IDFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
            N     +  I +  K +  S + +  +           +S+  G G  +++++I     
Sbjct: 172 NNLQRSEVPVILVANKFESESQWADVAEFYSLGLGDPWPVSALHGRGGADVLDEIVKSFP 231

Query: 364 NKFKKLPFSIPSHKR 378
            + K         +R
Sbjct: 232 EEPKSANSVTEGPRR 246


>gi|320101768|ref|YP_004177359.1| ribosome-associated GTPase EngA [Isosphaera pallida ATCC 43644]
 gi|319749050|gb|ADV60810.1| ribosome-associated GTPase EngA [Isosphaera pallida ATCC 43644]
          Length = 547

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 11/124 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI ++G  N GKS+  N LA+++  IV+++ GTTRD + +  +L+G      DTAG+R 
Sbjct: 216 MKIAVVGRPNTGKSTFINTLAQEERMIVSEVAGTTRDSVDVHFELDGLPFTAIDTAGVRR 275

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNI--DFIFIGTK 328
                D ++   + R    +  +D+ LL  +         K+   + +      IF+  K
Sbjct: 276 KAKLRDSLDYFSLHRAQRSIRRSDVTLLFLDPTQGITKLDKQLADYIQQQYKPCIFVINK 335

Query: 329 SDLY 332
            DL 
Sbjct: 336 WDLI 339



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 57/157 (36%), Gaps = 47/157 (29%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--------------- 265
           K+ ++G  N GKSSLFN L  K VAIV   PG TRD ++  L L+               
Sbjct: 5   KVAVVGRPNVGKSSLFNWLVGKRVAIVEPTPGVTRDRVSTLLCLDFNERPTRHSSPRPRF 64

Query: 266 -----------------------GYLVKISDTAGIRETDDIVEKEGIKRTFL-EVENADL 301
                                     V++ DT GI   D     + ++R     +E A L
Sbjct: 65  KDVRDLLEEEDEELDEPSQPSDAARYVELIDTGGIGIVDRDDLSDHVERQIRIALEEASL 124

Query: 302 ILLLKEINSKKEISFPK--------NIDFIFIGTKSD 330
           +L + ++   +     +        N   I +  K D
Sbjct: 125 VLFVVDVRDGRLPLDEEVADRLRRINRPTILVVNKVD 161


>gi|41407513|ref|NP_960349.1| GTP-binding protein EngA [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81831811|sp|Q740D6|DER_MYCPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|41395866|gb|AAS03732.1| hypothetical protein MAP_1415 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 466

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 105/267 (39%), Gaps = 31/267 (11%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +  L+ + T  +    +   SG+   L    +D     ++  +A + +S      +  S 
Sbjct: 116 VDALVGATTADEAAARILLRSGKPVFLAANKVDS---DKAEADAAMLWSLGLGEPHPISA 172

Query: 191 EVLNDILFLKNDISSHISQ-GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
                +  L +++ + + +  ++        ++ ++G  N GKSSL N LA    ++V D
Sbjct: 173 MHGRGVADLLDEVLAALPEVSEVAPRPGGPRRVALVGKPNVGKSSLLNKLAGDQRSVVHD 232

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLK 306
           + GTT D +   ++L   + +  DTAG+R         E     RT   ++ A+++++L 
Sbjct: 233 VAGTTVDPVDSLIELGDRVWRFVDTAGLRRKVGQASGHEFYASVRTHSAIDAAEVVIVLI 292

Query: 307 EINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHL 342
           + ++           +        +    K DL      E                    
Sbjct: 293 DASAPLTEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRELLEREIDRELVQLRWAQRVN 352

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL 369
           IS+ TG  + +L+  +++ L++   ++
Sbjct: 353 ISAKTGRAVAKLVPAMETALASWDTRI 379



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 17/162 (10%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  N GKS+L N +  +  A+V D+PG TRD ++ D    G    + DT G       ++
Sbjct: 36  GRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWTGRRFVVQDTGGWEPDAKGLQ 95

Query: 286 KEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
           +   ++  + +  AD ++L+ +          +   I             K D      +
Sbjct: 96  QLVAEQASVAMRTADAVILVVDALVGATTADEAAARILLRSGKPVFLAANKVDSDKAEAD 155

Query: 338 EY---------DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                       H IS+  G G+ +L++++ + L    +  P
Sbjct: 156 AAMLWSLGLGEPHPISAMHGRGVADLLDEVLAALPEVSEVAP 197


>gi|301123827|ref|XP_002909640.1| ras family GTPase, putative [Phytophthora infestans T30-4]
 gi|262100402|gb|EEY58454.1| ras family GTPase, putative [Phytophthora infestans T30-4]
          Length = 503

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 26/163 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I ++G +N GKS+LFN L K   AIV ++PGTTRD       L G  + + DT G+ +
Sbjct: 42  LRIALVGRTNVGKSTLFNRLTKTRSAIVHNVPGTTRDRRYKRATLAGLELDVVDTGGLED 101

Query: 280 TDDIVEKEGI-KRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIFIG 326
                 +EG+ ++T L V  ADL+  L +   ++ I+                     + 
Sbjct: 102 APSGTLEEGMLEQTRLAVHEADLVFFLVD--GRQGITPVDKHFARWLRKENPQAPIHLVA 159

Query: 327 TKSDL-YSTYTEEYDHLI----------SSFTGEGLEELINKI 358
            K +     + +E +             S+  GEG+  L+++I
Sbjct: 160 NKLEGDPERWEDELNDCYQLGMGGAIPLSAEHGEGITLLLDEI 202



 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 77/199 (38%), Gaps = 43/199 (21%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            K+ I+G  N GKS+L N + + D  +             +     G  +K+ DTAGIR 
Sbjct: 208 IKLAIVGRPNVGKSTLLNKIVRNDRVLTGPE--------YVPWTFHGRSIKLVDTAGIRR 259

Query: 279 ----ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI---------SFPKNIDFIFI 325
               + DD +E   ++ +F  +++A +++++ +++  K I            +    +  
Sbjct: 260 YGKRDHDDQIENLSVRDSFRAIDSAQVVVVVVDMSEPKLIHMDLTIAQRVIEEGRALVLA 319

Query: 326 GTKSDL-------------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
             KSDL                    +         IS+ TG G+++L+ ++        
Sbjct: 320 ANKSDLAGASVDLEMQRIQNELQDSLAQVRGVPVVPISALTGNGIKKLVPEVLKAYEKWD 379

Query: 367 KKLPFSIPSHKRHLYHLSQ 385
            ++        R L  +++
Sbjct: 380 LRVTTG--RLNRWLKAMAR 396


>gi|297584643|ref|YP_003700423.1| GTP-binding protein Era [Bacillus selenitireducens MLS10]
 gi|297143100|gb|ADH99857.1| GTP-binding protein Era [Bacillus selenitireducens MLS10]
          Length = 302

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 85/215 (39%), Gaps = 23/215 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+   ++G  N GKS+L N +  + +AI++D P TTR+ +   L  E   +   D
Sbjct: 4   EEQKSGF-AALVGRPNVGKSTLLNQVLGQKIAIMSDKPQTTRNRIQGVLTDERGQIVFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFI 325
           T GI +    +     K     +   D++L L +    K       I   +N       +
Sbjct: 63  TPGIHKPKHRLGDFMTKLAQQALREVDVVLFLVDAKEGKGAGDEYIIRKLENLETPVFLV 122

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         + + Y + Y       +S+  G  +E L+ ++   L       P  
Sbjct: 123 INKIDEVHPEELLSIIAGYKDLYPFAEVIPVSALNGNNVETLLEQVFKYLEPGPMYYPED 182

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
             +     + +S+ +R  ++  + E++    I  E
Sbjct: 183 QVTDHPERFLISEMIRE-KILHMTEEEVPHSIAVE 216


>gi|269218471|ref|ZP_06162325.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211582|gb|EEZ77922.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 560

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 28/198 (14%)

Query: 203 ISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           +++   +  +   +  G + + +LG  N GKSSL N LA  +  +V    GTTRD +   
Sbjct: 278 LAALPERSAVAAALPEGPRRVALLGRPNVGKSSLLNRLAGSERVVVDPTAGTTRDPVDEA 337

Query: 262 LDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEIS 315
           ++L+G      DTAGIR         +     RT   +  A+L L+L + +   ++++I 
Sbjct: 338 IELDGQTWIFVDTAGIRRRVHQTKGADFYASLRTRGALGKAELALVLIDASEPLTEQDIR 397

Query: 316 FPK-----NIDFIFIGTKSDLYSTY-TEEYDHLI---------------SSFTGEGLEEL 354
             +         + +  K DL   +   E D  +               S+ TG     L
Sbjct: 398 VMQQAIDAGRALVVVCNKWDLVDEHRRRELDREMDRDLVQVQWAERVNLSAATGWHTNRL 457

Query: 355 INKIKSILSNKFKKLPFS 372
              + + L +   ++P  
Sbjct: 458 TRAMDTALDSWEARVPTG 475



 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 84/214 (39%), Gaps = 25/214 (11%)

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILF---LKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
           A  +++E++D  +     VL + L    L  +  + ++ G   +       + ++G  N 
Sbjct: 74  ASKEWTEQDDDLDERRAAVLRENLDAYDLDEEDVAVLAGG-AADRPAAPPVLAVVGRPNV 132

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKS+L N +  + VA+V D+PG TRD +       G    + DT G  E D       + 
Sbjct: 133 GKSTLVNRIVGRRVAVVQDVPGVTRDRVGYPASWAGRDFTLVDTGGW-EIDVAGIDASVA 191

Query: 291 RTFLEV-------------------ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
           R                         +AD++ LL+       ++  K    +     + L
Sbjct: 192 RQAEAAVQAADAVVLVVDANVGITDADADIVKLLRRSKRPVVLAANKVDSPMQESDAAVL 251

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           +     E  + IS+  G G  +L++ + + L  +
Sbjct: 252 WGLGLGE-PYPISALHGRGTGDLLDAVLAALPER 284


>gi|154498351|ref|ZP_02036729.1| hypothetical protein BACCAP_02340 [Bacteroides capillosus ATCC
           29799]
 gi|150272662|gb|EDM99840.1| hypothetical protein BACCAP_02340 [Bacteroides capillosus ATCC
           29799]
          Length = 297

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 22/204 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI ++G  I I+G  N GKS+L NAL  + +AIVT+ P TTR+ +   L+         D
Sbjct: 2   EIKKSGM-IAIVGRPNVGKSTLTNALVGEKIAIVTNKPQTTRNRICAVLNRGECQFVFMD 60

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFI 325
           T G+      +    +K     V + D ++LL E    +   +E    +     +  + +
Sbjct: 61  TPGLHRARTRLGDYMVKVVRDSVADVDAVMLLVEPIPHVGGPEEELIERIKALGVPSVLV 120

Query: 326 GTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D                 ++ +    IS+   EGLE+L+  +   L    +  P  
Sbjct: 121 INKIDTVKKDELLAVMQAYGEKHSFDAILPISAKNSEGLEDLLKVLGEFLPEGPQLFPED 180

Query: 373 IPSHKRHLYHLSQTVRYLEMASLN 396
           + + +      ++ VR   +  L+
Sbjct: 181 MVTDQPERQVCAEIVREKLLLCLD 204


>gi|295109868|emb|CBL23821.1| GTP-binding protein Era [Ruminococcus obeum A2-162]
          Length = 302

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 81/216 (37%), Gaps = 22/216 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+   I+G  N GKS+L N L  + +AI +  P TTR+ +      +   +   D
Sbjct: 3   ENFKSGF-TAIIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTCDDGQIVFLD 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFI 325
           T GI +  + + +  ++     +++ D+IL L E  +          E     +I  I +
Sbjct: 62  TPGIHKAKNKLGEYMVQVAERTLKDVDVILWLVEPTTFIGAGERHIAEQLQGLHIPVILV 121

Query: 326 GTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D                 Y  +     S+   +  E++I  I   L          
Sbjct: 122 INKVDTVDKDEILKAIDTYRKLYDFDEIIPCSALRNQNTEDIIPSILKYLPYGPMFYDED 181

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
             + +      ++ +R   + +L+ +      +A +
Sbjct: 182 TVTDQPQRQIAAEIIREKALHALDAEIPHGIAVAID 217


>gi|15603995|ref|NP_220510.1| GTP-binding protein Era [Rickettsia prowazekii str. Madrid E]
 gi|6225298|sp|Q9ZE30|ERA_RICPR RecName: Full=GTPase Era
 gi|3860686|emb|CAA14587.1| GTP-BINDING PROTEIN ERA (era) [Rickettsia prowazekii]
 gi|292571711|gb|ADE29626.1| GTP-binding protein Era [Rickettsia prowazekii Rp22]
          Length = 295

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 89/202 (44%), Gaps = 23/202 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   + + DT 
Sbjct: 5   IQKTISVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIVTLKDTQIILYDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE-INSKKEISF-------PKNIDFIFIGT 327
           GI E   ++EK  ++  +  V +ADL+L + + +     I+          NI  IF+  
Sbjct: 65  GIFEPKGMLEKAMVRCAWSSVYSADLVLSIIDSLKPLDNIAHNILNQFCLLNIVPIFLLN 124

Query: 328 KSDLYSTYTEEYD------------HLISSFTGEGLEELINKIKS---ILSNKFKKLPFS 372
           K D+ S Y  +                IS+  G+ ++ L+  IKS   +    +     +
Sbjct: 125 KIDIESKYLNDIKAFLKITHPKSLLFPISALLGKNVDVLLEYIKSKAKVSPWLYADDDIT 184

Query: 373 IPSHKRHLYHLSQTVRYLEMAS 394
               +     +++   +L +  
Sbjct: 185 NLPMRFIAAEITREQLFLNLQQ 206


>gi|312196768|ref|YP_004016829.1| ribosome-associated GTPase EngA [Frankia sp. EuI1c]
 gi|311228104|gb|ADP80959.1| ribosome-associated GTPase EngA [Frankia sp. EuI1c]
          Length = 438

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D +  G    + DT G     
Sbjct: 2   LAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDANWSGRRFTLVDTGGWEPDA 61

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
             +      +    +  AD +L + +          +   +        +    K D   
Sbjct: 62  RGLAGRVSAQAQRALATADAVLFVVDATVGATDADEAVARVLHRSGRPVVLAANKVDDQR 121

Query: 331 LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKK 368
           L S     +       + +S+  G G  +L++ + + L     +
Sbjct: 122 LESDTAALWGLGLGEPYPVSALHGRGSGDLLDAVLAALPEAPPE 165



 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 62/167 (37%), Gaps = 3/167 (1%)

Query: 116 RAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           R     +  L  A+++  ++ +         ++  +            +K+   R   + 
Sbjct: 67  RVSAQAQRALATADAVLFVVDATVGATDADEAVARVLHRSGRPVVLAANKVDDQRLESDT 126

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN--GYKIVILGHSNAGK 232
              +          S         L + + + + +             ++ ++G  N GK
Sbjct: 127 AALWGLGLGEPYPVSALHGRGSGDLLDAVLAALPEAPPERFDEEDGPRRVALVGRPNVGK 186

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           SS+ N LA ++ A+V D+ GTTRD +   + + G      DTAG+R 
Sbjct: 187 SSMLNRLAGEERALVHDVAGTTRDPVDELVTVGGEQWLFIDTAGLRR 233


>gi|157803303|ref|YP_001491852.1| GTP-binding protein Era [Rickettsia canadensis str. McKiel]
 gi|189037664|sp|A8EXI4|ERA_RICCK RecName: Full=GTPase Era
 gi|157784566|gb|ABV73067.1| GTP-binding protein Era [Rickettsia canadensis str. McKiel]
          Length = 295

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 84/204 (41%), Gaps = 23/204 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           + I+    + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + D
Sbjct: 3   KQIQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPKNIDFIFI---- 325
           T GI E    +EK  ++  +  + +ADL++L+ +     +        K      +    
Sbjct: 63  TPGIFEPKGTLEKAMVRCAWSSLHSADLVMLIIDSLKPFDDVTHNILDKLCSLNIVPVFL 122

Query: 326 GTKSDLYSTYTEEYD------------HLISSFTGEGLEELINKI---KSILSNKFKKLP 370
             K ++ S Y                   IS+ +G+ ++ L+  I     I    + +  
Sbjct: 123 LNKIEIESKYLNNLKAFLTENHPDSLLFPISALSGKNIDRLLEYITSKAKIAPWLYAEDD 182

Query: 371 FSIPSHKRHLYHLSQTVRYLEMAS 394
            +    +     +++   +L +  
Sbjct: 183 ITDLPMRFIAAEITREQLFLNLQQ 206


>gi|157165129|ref|YP_001466229.1| GTP-binding protein EngA [Campylobacter concisus 13826]
 gi|166224319|sp|A7ZBS1|DER_CAMC1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|112801522|gb|EAT98866.1| GTP-binding protein EngA [Campylobacter concisus 13826]
          Length = 462

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 24/183 (13%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
           H+   ++   D S++ D       E  ND   L ++I                 ++ I+G
Sbjct: 159 HLEEKVQIKADTSDDFD----DFLENYNDEGELSDEID----------YESKNIRVGIIG 204

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--V 284
             N GKSSL NAL K+  A+V+D+ GTT D +    + +G + +  DTAGIR+   I  +
Sbjct: 205 RVNVGKSSLLNALVKESRAVVSDVAGTTIDPVNEIYEHDGRVFEFVDTAGIRKRGKIEGI 264

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
           E+  + RT   +E  D+ LL+ + +            I+    +  I +  K D  S   
Sbjct: 265 ERYALNRTEKILEETDVALLVLDSSEPLTELDERIAGIASKFELGVIIVLNKWDKSSEEF 324

Query: 337 EEY 339
           +E 
Sbjct: 325 DEL 327



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 18/164 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++++G  N GKSSLFN LA++ +AI +D+ GTTRD     +++EG    + D+ G+ ++
Sbjct: 3   KVILVGKPNVGKSSLFNRLARRRIAITSDVSGTTRDTNKAKIEVEGKECILIDSGGLDDS 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFP---KNIDFIFIGTKSDLY 332
            ++  K    +T  E +N+D+IL + +      +  + I +     N+    +  K D  
Sbjct: 63  SELF-KNVKAKTLAEAKNSDVILYMVDGKMMPDDEDRAIFYELSKLNLPIALVINKIDSK 121

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFK 367
                E++ +          S     G++EL   +   L  K +
Sbjct: 122 KDEQREWEFVNFGSKNSFGISVSHNTGVDELSIWLAKHLEEKVQ 165


>gi|294786930|ref|ZP_06752184.1| ribosome-associated GTPase EngA [Parascardovia denticolens F0305]
 gi|315226567|ref|ZP_07868355.1| ribosome-associated GTPase EngA [Parascardovia denticolens DSM
           10105]
 gi|294485763|gb|EFG33397.1| ribosome-associated GTPase EngA [Parascardovia denticolens F0305]
 gi|315120699|gb|EFT83831.1| ribosome-associated GTPase EngA [Parascardovia denticolens DSM
           10105]
          Length = 734

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 76/206 (36%), Gaps = 22/206 (10%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-----LGEIIRNGYKIVILGHSNAGKS 233
           +E  D   + +     +   L  +  + +++ +               I ++G  N GKS
Sbjct: 239 NEAIDQDLYDNYLSQLEGYDLDEEDRALLAESEGPVGGQEATDEKVGVIAVIGRPNVGKS 298

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           +L N +     AIV D PG TRD ++ + +  G+  K+ DT G     + ++     +  
Sbjct: 299 TLVNRVLGHRAAIVEDTPGVTRDRVSYEAEWAGHDFKLVDTGGWEADVEGIDSAIADQAS 358

Query: 294 LEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--- 342
           + +  AD I+ + +         +    +             K+D  +      +     
Sbjct: 359 IAMNMADAIIFVVDGTVGLTQTDDRIASLLRSSGKPVTVAVNKADSQAAEYAAAEFWKLG 418

Query: 343 ------ISSFTGEGLEELINKIKSIL 362
                 IS+  G G+ +L++   + L
Sbjct: 419 LGEPLPISALHGRGVGDLLDAAVNSL 444



 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 11/128 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ ++G  N GKSSL N LA ++ ++V D+ GTTRD +   + +        DTAGI+  
Sbjct: 461 RVALIGRPNVGKSSLLNQLAHENRSVVNDLAGTTRDPVDEVITIGDEKWLFIDTAGIKRR 520

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTKS 329
                  +     RT   +E ++L L+L + +   S +++     +       + +  K 
Sbjct: 521 LHKQSGADYYSSLRTQAAIERSELALVLFDASQPISDQDLKIMSSAVEAGRAIVLVFNKW 580

Query: 330 DLYSTYTE 337
           D    +  
Sbjct: 581 DALDEFDR 588


>gi|197294660|ref|YP_001799201.1| GTP-binding protein Era [Candidatus Phytoplasma australiense]
 gi|171853987|emb|CAM11950.1| Glycyl-tRNA synthetase [Candidatus Phytoplasma australiense]
          Length = 292

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 79/192 (41%), Gaps = 21/192 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ I I+G  N GKS+L N L  + +AI +D P TTR  +              DT G
Sbjct: 4   KSGF-IAIVGRPNVGKSTLLNVLTNQKIAITSDKPQTTRHKIVGICHESDAQYIFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSD 330
           I +   ++ ++  + +F  + + D+IL + +        +  +  F K      +  K D
Sbjct: 63  INQYKYLLNQKMNQISFRSISDVDVILFVTDSFYHPQEKNLLDFIFKKKKPLFLVINKID 122

Query: 331 LYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           +  +              Y       +S+   + + +L + +   +       P +I + 
Sbjct: 123 ILKSKNKIDAIILSYLNHYPFINVIPLSAVESKNIPKLKSFLYQNMQKGVPYYPQNIITD 182

Query: 377 KRHLYHLSQTVR 388
           ++  + +S+ VR
Sbjct: 183 QKKEFLMSEIVR 194


>gi|122701629|emb|CAL88204.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKSLNLKVAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSAL 166


>gi|206891018|ref|YP_002249510.1| GTP-binding protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742956|gb|ACI22013.1| GTP-binding protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 423

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 14/156 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I + G +NAGKSSL NAL  + +AIV+D+PGTT D +   +++     V + DTAG
Sbjct: 7   QRLHIALFGRTNAGKSSLINALTGQSLAIVSDVPGTTTDPVAKAMEILPLGPVVLIDTAG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTK 328
           I +   + E    K+++  ++  DL+LL+ +        +++I   +       I++  K
Sbjct: 67  IDDVGKLGELRK-KKSYEVLDKTDLVLLVIDPEKGFGEFERDIVKKAEETGTPLIYVVNK 125

Query: 329 SDLYSTYTE----EYDHLISSFTGEGLEELINKIKS 360
            D++    +    E    +S+ T EG+ EL   I +
Sbjct: 126 IDIHPEAKKYELPEPKVFVSALTAEGIVELKQTIVN 161


>gi|110004378|emb|CAK98716.1| probable gtp-binding protein era [Spiroplasma citri]
          Length = 294

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 82/195 (42%), Gaps = 22/195 (11%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
            I++G+ + I+G  N GKS+L N +    VAIVT    TTR+ +    + +   +   DT
Sbjct: 2   AIKSGF-VAIVGRPNVGKSTLLNTILNNKVAIVTAKAQTTRNRIQGIYNDQESQIVFMDT 60

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIG 326
            GI +  + + K   K      + AD+IL L   N +              + I  + + 
Sbjct: 61  PGIHKAHNEMGKFMNKVALSATKAADVILFLAPANERIGDNDRYIIKALQERAIPIVLVV 120

Query: 327 TKSDLYSTYT-----EEYDHLI--------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           TK DL S         E++ +         S+   + LE L+  +K+ L    +  P  +
Sbjct: 121 TKIDLVSKGDLMVKIAEWEKIHQFTAVIPVSAVKHKNLETLLILLKTHLEVGPQYYPDDM 180

Query: 374 PSHKRHLYHLSQTVR 388
            + +   + + + +R
Sbjct: 181 LTDQPEKFLICEIIR 195


>gi|16331223|ref|NP_441951.1| GTP-binding protein Era [Synechocystis sp. PCC 6803]
 gi|3334177|sp|Q55526|ERA_SYNY3 RecName: Full=GTPase Era
 gi|1001399|dbj|BAA10021.1| GTP-binding protein Era [Synechocystis sp. PCC 6803]
          Length = 315

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 27/227 (11%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           + I Q   G   R+G+ + I+G  N GKS+L N L  + +AI + +  TTR+ L   +  
Sbjct: 11  ATIPQAPAG--FRSGF-VAIVGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLQGIITT 67

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISF 316
               + + DT GI +    + +  +K     + + DL++ L + ++          ++  
Sbjct: 68  PSSQIILLDTPGIHKPHHELGRVLVKNAIQAIHSVDLVVFLVDSSATLGRGDRFVVDLLQ 127

Query: 317 PKNIDFIFIGTKSDL------------YSTYTEEYDHLI---SSFTGEGLEELINKIKSI 361
             +   +    K D             Y T TE +       S+ TGEGL    + +++ 
Sbjct: 128 KTDGPVVVGLNKQDQQPPDQREELNASYETLTENHGWPCFKFSALTGEGLSNFQSALEAR 187

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVR-YLEMASLNEKDCGLDIIAE 407
           L       P  + + +   + +++ +R  + + +  E    + I  E
Sbjct: 188 LDPGPYYYPPDLVTDQPERFIMAELIREQILLLTRQEVPHSVAIAIE 234


>gi|227496096|ref|ZP_03926402.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces
           urogenitalis DSM 15434]
 gi|226834330|gb|EEH66713.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces
           urogenitalis DSM 15434]
          Length = 720

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 91/210 (43%), Gaps = 32/210 (15%)

Query: 191 EVLNDILFLKNDISSHI-SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           EVL+  + +  ++SS      + G + R    + ++G  N GKSSL N++A     +V +
Sbjct: 433 EVLDAAMAILPEVSSVAGPSPEHGSLNR----VALVGRPNVGKSSLLNSIAGSQRVVVNE 488

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLK 306
           + GTTRD +   ++L+G      DTAGIR   +     +   + RT   +E A++ ++L 
Sbjct: 489 LAGTTRDPVDEVIELDGRQWLFIDTAGIRRRVKQSRGADYYAVLRTQGAIEKAEVAVVLL 548

Query: 307 EIN---SKKEISFPK-----NIDFIFIGTKSDLYSTYTE-------EYDHLISSF----- 346
           + +   S++++   +         + +  K DL     +       E+D    ++     
Sbjct: 549 DASESVSEQDVRVIQQVVDAGRALVLVNNKWDLVDEERQKMLTWETEHDLAHVAWAPHIN 608

Query: 347 ----TGEGLEELINKIKSILSNKFKKLPFS 372
               TG     L+  + + L     ++P  
Sbjct: 609 LAARTGWHTNRLVRALDAALEGWTTRIPTG 638



 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 24/228 (10%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEI-- 215
               + H+   IE  LD +   D +       L    +   L  +  + +   ++ E   
Sbjct: 217 LEQSVEHVVDLIEQALDEAAARDAEEDLRAAALRAGLEDYELDEEDRALLEAQEVPEADG 276

Query: 216 -IRNGYKI-VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
            +  G  +  ++G  N GKS+L N +  + VA+V D PG TRD ++   +  G    I D
Sbjct: 277 GLDAGLPVLAVVGRPNVGKSTLVNRVLGRRVAVVQDTPGVTRDRVSYPAEWAGRRFTIVD 336

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFI 325
           T G       +++    +  + VE AD ++L+ +          S  ++        +  
Sbjct: 337 TGGWELDVKGLDQAVATQAEVAVELADAVILVVDAQVGITATDASVVKMLRRSGKPVVLA 396

Query: 326 GTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSN 364
             K D  +   +               S+  G G  E+++   +IL  
Sbjct: 397 ANKVDSAAQEGDAAALWNLGLGEPYPVSALHGRGSGEVLDAAMAILPE 444


>gi|122700737|emb|CAL87957.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ + S L
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSAL 166


>gi|13508214|ref|NP_110163.1| GTP-binding protein EngA [Mycoplasma pneumoniae M129]
 gi|8247924|sp|P75309|DER_MYCPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|11379528|gb|AAG34744.1|AE000034_1 GTPase [Mycoplasma pneumoniae M129]
 gi|301633464|gb|ADK87018.1| ribosome-associated GTPase EngA [Mycoplasma pneumoniae FH]
          Length = 449

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 29/193 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +  ++G  N GKSSL N L +++  +V+D  GTTRD + I L + G    + DTAGIR 
Sbjct: 180 VRFCVIGKPNVGKSSLINQLVQQNRVLVSDESGTTRDAIDIPLRVNGQNYLLIDTAGIRR 239

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKE----INSKKEI----SFPKNIDFIFIGTK 328
              I   +E     +T L +  +++ILL+ +    ++ + EI    +    I  I +  K
Sbjct: 240 KGKIAPGIEAASYGKTQLAIARSNIILLMVDGSKPLSEQDEIIGGLAQAALIPVIILVNK 299

Query: 329 SDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL    +                        IS    + L  +  +++ I     KK+ 
Sbjct: 300 WDLVQKDSNTMAKFKKQLQSQFQHLSFAPIVFISVKNNKRLHTIFEQLQIIQEQLTKKIS 359

Query: 371 FSIPSHKRHLYHL 383
            S+ +       L
Sbjct: 360 TSLLNDVIQQAQL 372



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 21/162 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKSSLFN L +K  AI++D P TTRD +    +     +   DT G+  
Sbjct: 2   FTVAIIGRPNVGKSSLFNRLIQKPYAIISDTPNTTRDRIYGVGEWLTRQIAFIDTGGLIS 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKS- 329
               ++++   +    +  A+ I+ L     +         K +   K+   + +  KS 
Sbjct: 62  QKTPLQQQIEVQVRAALSQANAIIFLVSYQEQISSDDFYVAKVLKKIKDKPILLVVNKSE 121

Query: 330 ----DLYSTYTEEY-------DHLISSFTGEGLEELINKIKS 360
               D Y    +++          +S+  G G+  L++++  
Sbjct: 122 NLKPDAYEPNLQQFYSFGFGQPVCVSASHGIGIGNLMDRLVK 163


>gi|313886114|ref|ZP_07819849.1| ribosome biogenesis GTPase Era [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332300531|ref|YP_004442452.1| GTP-binding protein Era-like-protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|312924460|gb|EFR35234.1| ribosome biogenesis GTPase Era [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332177594|gb|AEE13284.1| GTP-binding protein Era-like-protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 306

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 86/204 (42%), Gaps = 21/204 (10%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
            H++   L E  ++G+ + I+G+ N GKS+L N L  + ++I+T    TTR  +   ++ 
Sbjct: 5   QHLAGKSLPEGYKSGF-VSIVGNPNVGKSTLMNYLVGERISIITSKAQTTRHRILGIVNS 63

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFP 317
           +   V  SDT G+ +    +++     +   +E+ADL+L + +   ++       E    
Sbjct: 64  DHMQVVYSDTPGVLQPSYKLQERMRAYSEQALEDADLLLYVTDTMEERDKHHDFVERVQR 123

Query: 318 KNIDFIFIGTKSDL-------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            +   I +  K DL             +S   +     +S+     L  L  +I+ +L  
Sbjct: 124 LSCPIIVVINKVDLTDQKHLEELVDYWHSIIPQAEIIPVSALRQFNLAPLKKRIEELLPV 183

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVR 388
                     + +   + +S+ +R
Sbjct: 184 SPPYFEQDALTDRPARFFVSEIIR 207


>gi|315640637|ref|ZP_07895743.1| GTP-binding protein Era [Enterococcus italicus DSM 15952]
 gi|315483665|gb|EFU74155.1| GTP-binding protein Era [Enterococcus italicus DSM 15952]
          Length = 298

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 74/188 (39%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 9   VALVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGVYTTKDAQIVFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNI--DFIFIGTKSD--- 330
             +    ++  F  +   D+IL +   + K+       I   K        +  K D   
Sbjct: 69  SRLGDFMVESAFSALNEVDVILFMISADQKRGKGDDLIIERLKKQSVPVFLVVNKLDKVH 128

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 + + Y+++ D      IS+  G     L+  I+  L    +  P    +     
Sbjct: 129 PDALLEVIADYSQQMDFAEVVPISATEGNNFPTLMATIEKELEEGPQYFPEDQVTDHPEY 188

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 189 FIVSELIR 196


>gi|254511655|ref|ZP_05123722.1| GTP-binding protein EngA [Rhodobacteraceae bacterium KLH11]
 gi|221535366|gb|EEE38354.1| GTP-binding protein EngA [Rhodobacteraceae bacterium KLH11]
          Length = 487

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 9/120 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ +
Sbjct: 3   LTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEGRLGDLRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
            TDD ++    + T   V+ AD+ L + +             EI   ++   I    K++
Sbjct: 63  ATDDSLQSRMRRLTERAVDMADVCLFMIDARVGLTPTDEMFAEILRKRSKHVILAANKAE 122



 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 81/200 (40%), Gaps = 36/200 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-----YLVKISDT 274
            ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D          ++I DT
Sbjct: 198 LQVAVVGRPNAGKSTLINKIMGEDRLLTGPEAGITRDAISLRVDWADPEGGSTPMRIFDT 257

Query: 275 AGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFI 323
           AG+R+   +    EK  +      V+ A+++++L +     E        ++  +    +
Sbjct: 258 AGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVV 317

Query: 324 FIGTKSDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNK 365
               K D+  +  E+                      +S+ TG GLE L   I       
Sbjct: 318 LAVNKWDVEDSKQEKLRDLKESFERLLPQLRGAPLITVSAKTGRGLERLRAAILRAHDVW 377

Query: 366 FKKLPFSIPSHKRHLYHLSQ 385
            +++P +  +  R L  + +
Sbjct: 378 NRRVPTAALN--RWLTAMLE 395


>gi|37999700|sp|Q8FTK5|DER_COREF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
          Length = 528

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 86/233 (36%), Gaps = 33/233 (14%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
               S +       + + I     +    + I  G + + ++G  N GKSSL N  A ++
Sbjct: 227 PFPVSAQHGRGGADVLDKILESFPEEPRAKSIVEGPRRVALVGKPNVGKSSLLNKFAGEE 286

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENAD 300
            ++V ++ GTT D +   + L+  + K  DTAG+R+        E     RT   +++A+
Sbjct: 287 RSVVDNVAGTTVDPVDSIIQLDQKMWKFIDTAGLRKKVKTATGHEFYASLRTRSVIDSAE 346

Query: 301 LILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS-----TYTEEYD------- 340
           + +LL + +        +            +    K DL           E D       
Sbjct: 347 VCVLLIDSSEPITEQDQRVLAMITDAGKALVVAFNKWDLMDEDRRWELDRELDLQLAHIP 406

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                 IS+ TG  L+ L   +   L N  +++     ++      L + +  
Sbjct: 407 WAKRINISAKTGRALQRLEPAMIEALENWDRRVSTGQLNNW-----LREAIAA 454



 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 18/173 (10%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           +  E +      + I+G  N GKS+L N    +  A+V D PG TRD ++   D  G   
Sbjct: 80  ERREHLEESLCTVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLSDWGGQRF 139

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NID 321
            + DT G       +      +  L + +AD+I+ + +    I     +   K    ++ 
Sbjct: 140 WVQDTGGWDPNVKGIHASIAHQAELAMASADVIVFVVDTKVGITETDAVMARKLKRADVP 199

Query: 322 FIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNK 365
            I +  K D  S + +  +           +S+  G G  ++++KI      +
Sbjct: 200 VILVANKFDSDSQWADMAEFYALGLGDPFPVSAQHGRGGADVLDKILESFPEE 252


>gi|317490504|ref|ZP_07948984.1| GTP-binding protein HflX [Eggerthella sp. 1_3_56FAA]
 gi|316910397|gb|EFV32026.1| GTP-binding protein HflX [Eggerthella sp. 1_3_56FAA]
          Length = 436

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 112/295 (37%), Gaps = 24/295 (8%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           + + ++  R       +  L          L   R        F E E       + V  
Sbjct: 129 LHATSKEGRLQVRLAQNEYLLPRLRGMWAHLASNRMGGGVGSRFGEGESQLEVDRRMVRK 188

Query: 195 DILFLKNDISSH--ISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +K ++     +   +      +G +K+ + G++NAGKSSL N L   DV +  D  
Sbjct: 189 RITSIKRELKHLAEVRAVQRESRYESGMFKVALAGYTNAGKSSLLNRLTNADV-LAYDKL 247

Query: 252 GTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D  T   +L EG  + ++DT G  +       E  K T  E+  ADL+L + + +S
Sbjct: 248 FATLDSTTRKFELPEGREITVTDTVGFIQKLPTTLIEAFKSTLDEITGADLVLHVVDASS 307

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGL 351
            +                 +++  + +  K DL                  +S+  GEG+
Sbjct: 308 DEYEAQIAAVEDVLGQIHAQDLSRVLVFNKCDLLGEERLGALKARHPQAQFVSAAMGEGV 367

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
            EL+  +  + S + + L   IP ++  L  ++    ++   +  E+   + ++A
Sbjct: 368 GELVEHVARVASAQDEHLDVLIPYNRGDLVSVAHERCHILSETHEEQGTRIVMLA 422


>gi|19552644|ref|NP_600646.1| GTP-binding protein EngA [Corynebacterium glutamicum ATCC 13032]
 gi|62390312|ref|YP_225714.1| GTP-binding protein EngA [Corynebacterium glutamicum ATCC 13032]
 gi|41325649|emb|CAF21438.1| GTPase of unknown function [Corynebacterium glutamicum ATCC 13032]
          Length = 543

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD ++   D  G+   + DT G     
Sbjct: 107 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYISDWGGHRFWVQDTGGWDPNV 166

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
             +     ++  + +  AD+I+ + +    I     +   K     +  I +  K D  S
Sbjct: 167 KGIHASIAQQAEVAMSTADVIVFVVDTKVGITETDSVMAAKLLRSEVPVILVANKFDSDS 226

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            + +  +           +S+  G G  ++++K+  +   + +     
Sbjct: 227 QWADMAEFYSLGLGDPYPVSAQHGRGGADVLDKVLELFPEEPRSKSIV 274



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 86/233 (36%), Gaps = 33/233 (14%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
               S +       + + +     +    + I  G + + ++G  N GKSSL N  A + 
Sbjct: 242 PYPVSAQHGRGGADVLDKVLELFPEEPRSKSIVEGPRRVALVGKPNVGKSSLLNKFAGET 301

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENAD 300
            ++V ++ GTT D +   + L+  L K  DTAG+R   +T    E     RT   ++ A+
Sbjct: 302 RSVVDNVAGTTVDPVDSLIQLDQKLWKFVDTAGLRKKVKTASGHEYYASLRTHGAIDAAE 361

Query: 301 LILLLKEINS-----------------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-- 341
           L +LL + +                  K  +      D +    + DL      +  H  
Sbjct: 362 LCVLLIDSSEPITEQDQRVLAMITDAGKALVIAFNKWDLMDEDRRIDLDRELDLQLAHVP 421

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                 IS+ TG  L+ L   +   L N  +++     +       L + +  
Sbjct: 422 WAKRINISAKTGRALQRLEPAMLEALDNWDRRISTGQLNTW-----LREAIAA 469


>gi|57505514|ref|ZP_00371441.1| GTP-binding protein, Era/ThdF family [Campylobacter upsaliensis
           RM3195]
 gi|57016061|gb|EAL52848.1| GTP-binding protein, Era/ThdF family [Campylobacter upsaliensis
           RM3195]
          Length = 457

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 104/252 (41%), Gaps = 34/252 (13%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG-- 210
            +       + +L ++       LD      ++NF    VL +    +  +   +     
Sbjct: 126 RVYEFVNFGVKELFNLSVTHNVGLD-ELYAWLENFLHTSVLKNDEE-EQSLEEFLENFDE 183

Query: 211 ----KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
               K  EI  N  KI I+G  N GKSSL NAL K+  ++V+ I GTT D +   +  + 
Sbjct: 184 EKEIKFKEIDENHIKIGIVGRVNVGKSSLLNALVKEQRSVVSSIAGTTIDPVNESVMYKD 243

Query: 267 YLVKISDTAGIRETDDIV--EKEGIKRTFLEVENADLILLLKEIN------SKKEISFPK 318
            +++  DTAGIR+   I   E+  + RT   ++N+ + LL+ + N       ++      
Sbjct: 244 KVLEFIDTAGIRKRGKIQGIERFALNRTEKMLQNSQIALLVLDANEGFNELDERIAGLIS 303

Query: 319 NID--FIFIGTKS----------------DLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                 I +  K                 D +   +      +S+ +G+ +  +++KI  
Sbjct: 304 KHYLGVIIVLNKWDKTRYEFDKVVKELRLDRFKFLSHAPIISVSALSGKRVHIVMDKILE 363

Query: 361 ILSNKFKKLPFS 372
           + +N  +K+P +
Sbjct: 364 VFANFTQKIPTA 375



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 18/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI ++I GTTRD   I +++ G    + D+ G+ E++
Sbjct: 4   IILIGKPNVGKSSLFNRIARQRIAITSEISGTTRDTNKIKVNINGKEALLIDSGGLDESN 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           ++  K   + +    +NAD+IL L +  +  +    K              I  K D   
Sbjct: 64  ELF-KNVKQNSLNAAKNADIILYLVDGKNLPDEEDRKFFYTLKKLQKPMALIINKVDNKK 122

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                Y+ +          S     GL+EL   +++ L     K   
Sbjct: 123 DEERVYEFVNFGVKELFNLSVTHNVGLDELYAWLENFLHTSVLKNDE 169


>gi|122700911|emb|CAL88044.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQISDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALN 167


>gi|148269225|ref|YP_001243685.1| GTP-binding protein Era [Thermotoga petrophila RKU-1]
 gi|189037683|sp|A5IIT6|ERA_THEP1 RecName: Full=GTPase Era
 gi|147734769|gb|ABQ46109.1| GTP-binding protein Era [Thermotoga petrophila RKU-1]
          Length = 300

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 77/195 (39%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I++G+ + + G  N GKS+  N +  + V IV+D P TTR+ +          +   DT 
Sbjct: 3   IKSGF-VALAGKPNVGKSTFINVVMGRKVVIVSDKPQTTRNRINCIYTDRDSQIIFVDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           GI +    + +  +K     ++  DLIL + +             +I        I    
Sbjct: 62  GIHKPLHRLGEYMVKAAVQALKGVDLILFMLDAADGFTKTDEHVAKIVSESGTKTIIAVN 121

Query: 328 KSDLYSTYTEEY--------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D+      +                H IS+  GEG+ E++ KIK  L    +  P  +
Sbjct: 122 KIDVAGEEKAKAVGQLAKSMVENVVSVHYISALKGEGVFEVLEKIKEELPEGPQYYPEDM 181

Query: 374 PSHKRHLYHLSQTVR 388
            + +   +  ++ +R
Sbjct: 182 VTDRPLSFMAAEIIR 196


>gi|288871688|ref|ZP_06118601.2| GTP-binding protein [Clostridium hathewayi DSM 13479]
 gi|288862428|gb|EFC94726.1| GTP-binding protein [Clostridium hathewayi DSM 13479]
          Length = 407

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 26/182 (14%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LE 265
           ++    GE +  G+     G  NAGKSS+ NA+  +++++V+DI GTT D +   ++ L 
Sbjct: 4   LNDTPGGERLHIGF----FGRRNAGKSSIVNAVTGQELSVVSDIKGTTTDPVYKSMELLP 59

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF---P 317
              V I DT G  +   + E   +K+T   +  AD  +L+ +       + +E+      
Sbjct: 60  MGPVVIIDTPGFDDEGALGELR-VKKTREILNRADCAVLVVDSLQGKTKADEELLSLFKE 118

Query: 318 KNIDFIFIGTKSDLYST------------YTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           K I F+    K DL                TEE    +S+ T   ++EL  KI  ++  K
Sbjct: 119 KEIPFLIAYNKWDLLEKNESHGGQCTAEELTEENGITVSAETSYHIQELKEKIAGLVKEK 178

Query: 366 FK 367
             
Sbjct: 179 EH 180


>gi|331701380|ref|YP_004398339.1| GTP-binding protein Era-like-protein [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128723|gb|AEB73276.1| GTP-binding protein Era-like-protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 300

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+  N +  + +AI++D P TTR+ +      +   +   DT GI +  
Sbjct: 11  IAIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTKEAQIVFIDTPGIHKPQ 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNID--FIFIGTKSD--- 330
           + +    ++     ++  D +L +      +       I   KN+D     +  K D   
Sbjct: 71  NKLGDFMMESALSALKEVDAVLFMVNATEHRGAGDNFIIDQLKNVDKPIYLLINKIDEIS 130

Query: 331 ------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y    +    + IS+  G  + ELI+ +   L N  +  P    +     
Sbjct: 131 PDDIMPIIEQYKNALEFKDVYPISALQGNNVPELIDTLIKELPNGPQYYPADEVTDHPER 190

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 191 FVISELIR 198


>gi|323704187|ref|ZP_08115766.1| GTP-binding protein Era [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536253|gb|EGB26025.1| GTP-binding protein Era [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 299

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 21/187 (11%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G +N GKS+L NAL  + VAI +D P TTR+ +   L  E Y V   DT GI +   
Sbjct: 9   ALIGRTNVGKSTLLNALLNEKVAITSDKPQTTRNTIQGILTGEDYQVIFIDTPGIHKPKH 68

Query: 283 IVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNI--DFIFIGTKSDLYS- 333
            + +  I+     +   DLI+ + E +       K  I    NI    I +  K D  S 
Sbjct: 69  KLSEFMIESVKKTLAEVDLIIYMVEPDVEVGPGDKYIIDHLINIETPVILVINKIDTVSH 128

Query: 334 ------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                        Y  +    IS+     ++ L + I S +    +  P    + +   +
Sbjct: 129 ETVDMSIQIFKQLYNFKDILPISALKNMNIDLLKHTIVSYIPEGPQYFPSDYITDRPEKF 188

Query: 382 HLSQTVR 388
            +S+ +R
Sbjct: 189 LVSEIIR 195


>gi|307153467|ref|YP_003888851.1| GTP-binding protein Era [Cyanothece sp. PCC 7822]
 gi|306983695|gb|ADN15576.1| GTP-binding protein Era [Cyanothece sp. PCC 7822]
          Length = 318

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 25/219 (11%)

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
           + +D   L+  IS  I     G   ++G+ + I+G  N GKS+L N L  + VAI + + 
Sbjct: 1   MNHDDTNLQPPISYSIPIAPEG--FKSGF-VAIIGRPNVGKSTLMNQLVGQKVAITSPVA 57

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            TTR+ L   L  +   +   DT GI +    + K  +K   + +   DL+LL+ + + +
Sbjct: 58  QTTRNRLQGILTTDQAQIIFVDTPGIHKPHHELGKVLVKNAQIAINAVDLVLLVVDSSIE 117

Query: 312 KE------ISFPKNIDFIFI--GTKSDLYSTYTEEYD---------HLI-----SSFTGE 349
                   I   ++     I    KSD      E  D         H       S+  G 
Sbjct: 118 AGGGDRYIIELVEDTRTPVILGLNKSDQQPANYEPLDESYTRLSQLHHWPMVKFSALQGT 177

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           G E+L N +   L       P  + + +   + + + +R
Sbjct: 178 GTEQLQNLLIEHLEPGPYYYPPDLVTDQPERFIMGELIR 216


>gi|120404249|ref|YP_954078.1| GTP-binding protein EngA [Mycobacterium vanbaalenii PYR-1]
 gi|166225829|sp|A1TA72|DER_MYCVP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|119957067|gb|ABM14072.1| small GTP-binding protein [Mycobacterium vanbaalenii PYR-1]
          Length = 470

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N L+  + ++V D+ GTT D +   ++++G L +  DTAG+R  
Sbjct: 207 RVALVGKPNVGKSSLLNRLSGDERSVVHDVAGTTVDPVDSLIEMDGKLWRFVDTAGLRRK 266

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
                  E     RT   ++ A++ ++L + +            +        +    K 
Sbjct: 267 VGQASGHEFYASVRTHGAIDAAEVAIVLVDASQPLTEQDQRVLSMVVEAGRALVLAFNKW 326

Query: 330 DLYST-----YTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL           E D             IS+ TG  +++L+  +++ L +   ++   
Sbjct: 327 DLVDEDRRYLLDREIDLQLAQLQWAPRVNISAKTGRAVQKLVPALETALKSWDTRVSTG 385



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 19/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD ++ D    G    + DT G     
Sbjct: 34  VAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDASWSGQRFMVQDTGGWEPDA 93

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE--------INSKKEISFPKNIDFIFIGTKSD--- 330
             +++   ++  + +  AD I+ + +          +  ++             K D   
Sbjct: 94  KGLQQLVAEQASVAMRTADAIIFVVDSVVGATAADEAAAKLLQRSGKPVFLAANKVDNER 153

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  L+S    E  H IS+  G G+ +L++ +   L 
Sbjct: 154 GEADAAALWSLGLGE-PHPISAMHGRGVADLLDAVVDALP 192


>gi|157825293|ref|YP_001493013.1| GTP-binding protein Era [Rickettsia akari str. Hartford]
 gi|189037662|sp|A8GM80|ERA_RICAH RecName: Full=GTPase Era
 gi|157799251|gb|ABV74505.1| GTP-binding protein Era [Rickettsia akari str. Hartford]
          Length = 293

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 20/159 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   V + DT GI E
Sbjct: 7   ISVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFE 66

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDL 331
               +EK  ++  +  + +ADL++L+ +         +   +     NI  IF+  K D+
Sbjct: 67  PKGSLEKAMVRCAWSSLHSADLVMLIIDSLKPFDDVTHDILDKLRSLNIVPIFLLNKIDI 126

Query: 332 YSTYTEEYD------------HLISSFTGEGLEELINKI 358
            S Y ++                IS+ +G+ +  L+  I
Sbjct: 127 ESKYLDDIKAFLIGNHPDSLFFPISALSGKNINGLLEYI 165


>gi|326692993|ref|ZP_08229998.1| GTPase [Leuconostoc argentinum KCTC 3773]
          Length = 303

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   V   DT G+ +  
Sbjct: 11  VAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDNAQVVFIDTPGVHKPQ 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDL- 331
           + +    +K  F  +  AD I  + + +  +          +   K+     +  K DL 
Sbjct: 71  NSLGDFMVKSAFSALHEADAIWFVVDASMPRGRGDDFIISRLKEVKDTPIYLLINKVDLV 130

Query: 332 --------YSTYTEEYD-----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                     +Y E+         IS+  G+ + EL+  I   L    +       +   
Sbjct: 131 TADELLDVIQSYQEDAPTWAEVFPISATEGDNVPELLGNIVESLEEGPQYFDSDQLTDHP 190

Query: 379 HLYHLSQTVR 388
             + + + +R
Sbjct: 191 ERFVIGELIR 200


>gi|294055426|ref|YP_003549084.1| ribosome-associated GTPase EngA [Coraliomargarita akajimensis DSM
           45221]
 gi|293614759|gb|ADE54914.1| ribosome-associated GTPase EngA [Coraliomargarita akajimensis DSM
           45221]
          Length = 514

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 102/258 (39%), Gaps = 32/258 (12%)

Query: 122 KIDLLEAE-SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS- 179
           K     AE  +   I + T +   + +      L  +    + +       I   +D S 
Sbjct: 69  KKIATAAEDQVEFAIQAATVVLFVVDVRSGVTALDEMVADKLRRYGKHVILIANKVDSSA 128

Query: 180 EEEDVQNF----------SSKEVLNDILFLKNDISSHI---SQGKLGEIIRNGYKIVILG 226
           EE D ++F           S E    +  L   I + +    +G+ G+  +   +I ++G
Sbjct: 129 EEADAEDFASLGLGAAIKVSAEHGRGVASLNEAIEAKLGPKPEGQEGDKEKR-IRISLVG 187

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL----EGYLVKISDTAGIRET-- 280
             N GKSSL NAL +    IV+D+PGTTRD + +DLD     E    +++DTAG+R    
Sbjct: 188 RPNVGKSSLGNALLESTRLIVSDVPGTTRDSVELDLDYQKDGESIKFRLADTAGLRSKRK 247

Query: 281 -DDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD- 330
             + VE     RT   +E +D++ L+ +          +            + +  K D 
Sbjct: 248 VGNPVEYFSNVRTQHAIERSDVVFLVIDAADGVTKQDQALAGDILDAGKALVVVVNKHDK 307

Query: 331 LYSTYTEEYDHLISSFTG 348
           L   + +E      +   
Sbjct: 308 LKERWDQEPIDGYKNLKH 325



 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 24/178 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS LFN L  + ++IV D+PG TRD+++ ++  +     + DT GI    
Sbjct: 8   VALVGRPNVGKSRLFNRLCGRRMSIVHDMPGVTRDLISTEVRDD---YVLLDTGGIGMEL 64

Query: 282 DIVEKEGI----KRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKS 329
           ++  K+       +    ++ A ++L + +    + +  E+   K        I I  K 
Sbjct: 65  EMTPKKIATAAEDQVEFAIQAATVVLFVVDVRSGVTALDEMVADKLRRYGKHVILIANKV 124

Query: 330 DLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           D  +   +  D           +S+  G G+  L   I++ L  K +          R
Sbjct: 125 DSSAEEADAEDFASLGLGAAIKVSAEHGRGVASLNEAIEAKLGPKPEGQEGDKEKRIR 182


>gi|282897000|ref|ZP_06305002.1| Small GTP-binding protein, era -like protein [Raphidiopsis brookii
           D9]
 gi|281197652|gb|EFA72546.1| Small GTP-binding protein, era -like protein [Raphidiopsis brookii
           D9]
          Length = 308

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 80/210 (38%), Gaps = 22/210 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L  + +AI + +  TTR+ L   L  E   +   DT GI +  
Sbjct: 19  IGIIGRPNVGKSTLMNQLIGQKIAITSPVAQTTRNRLRGILTREKAQLIFVDTPGIHKPH 78

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNIDFIFI--GTKSDLYS 333
             + +  ++   + + + D++L + +  +      +         +   I    K D   
Sbjct: 79  HPLGEVLVQNAKIAITSVDVVLFVVDGTAVCGGGDRFIADLLSKCEIPVIMGINKIDQQP 138

Query: 334 TYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             TE+ D                 S+   +G+ EL + +   L       P  + + +  
Sbjct: 139 VETEKIDESYRELARENQWQIVKFSALENQGILELEDLLIEQLETGPLYYPPDLVTDQPE 198

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            + + + +R   +    E+      IA +L
Sbjct: 199 RFIMGELIREQILLLTREEVPHSVAIAIDL 228


>gi|122702561|emb|CAL88470.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++    +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDTKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALN 167


>gi|220928031|ref|YP_002504940.1| GTP-binding protein Era [Clostridium cellulolyticum H10]
 gi|254783293|sp|B8I736|ERA_CLOCE RecName: Full=GTPase Era
 gi|219998359|gb|ACL74960.1| GTP-binding protein Era [Clostridium cellulolyticum H10]
          Length = 298

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 81/205 (39%), Gaps = 24/205 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L N +  + +AI+++ P TTR+ +   +  +   + + DT 
Sbjct: 3   YKSGF-VSVIGRPNVGKSTLLNTITGQKIAIMSNKPQTTRNTIRGVITNKECQLILIDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGT 327
           GI +    + +  +      ++  DLIL L E N++                     I  
Sbjct: 62  GIHKPKTKLGEYMVNVASETIKEVDLILFLVEANTQPGAQDVNIIQQLKQIKTPVFLILN 121

Query: 328 KSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL S                 +    IS+   +G++ ++ +    +    +     + 
Sbjct: 122 KVDLISKDKLLAIIDSYSKLMDFKAIIPISALKNDGIDLILKEALDYIPEGPQFFSEDML 181

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKD 399
           + +      ++ +R  E   LN  D
Sbjct: 182 TDQPEKVIAAEMIR--EKVLLNLDD 204


>gi|326385799|ref|ZP_08207428.1| GTP-binding protein EngA [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209778|gb|EGD60566.1| GTP-binding protein EngA [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 454

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 18/156 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            +VI+G  N GKS+LFN L  K +A+V D PG TRD    D +L G    I DTAG  + 
Sbjct: 3   HVVIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRFGDAELLGLAFTIVDTAGWEDD 62

Query: 281 DDIVE-KEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSD- 330
           D          +T   +E A + L + +  +      +EI       ++  + +  K++ 
Sbjct: 63  DPSSLPGRMRAQTEAALEGATVALFVIDARAGLTPLDEEIGRHLHESSVPVVLLANKAEG 122

Query: 331 ------LYSTYTEEY--DHLISSFTGEGLEELINKI 358
                 L+ +Y   +      S+  GEGL +L   +
Sbjct: 123 RAGDSGLFESYALGFGDPIAFSAEHGEGLADLFQAL 158



 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 80/193 (41%), Gaps = 35/193 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG------YLVKISD 273
            K+ ++G  NAGKS+L N L  +D  +     G TRD + +D +           +++ D
Sbjct: 184 LKLAVVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIAVDWEWRDPATGESRPIRLID 243

Query: 274 TAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDF 322
           TAG+R+     D +E+  +      ++ A++++LL +     E        +   +    
Sbjct: 244 TAGMRKKAQVVDKLERLSVADARRAIDFAEVVVLLLDATRGLEHQDLKIASMVLEEGRAL 303

Query: 323 IFIGTKSDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSN 364
           +    K D+    +  ++                    +S+ TG+GL++++    S+   
Sbjct: 304 MIAINKWDVAEDASGLFNGVRAALDDGLAQVRGLPLVAVSARTGKGLDQMLGAAFSLRDA 363

Query: 365 KFKKLPFSIPSHK 377
             +++P +  +  
Sbjct: 364 WSRRVPTAALNRW 376


>gi|217077014|ref|YP_002334730.1| GTP-binding protein Era [Thermosipho africanus TCF52B]
 gi|226741399|sp|B7IH25|ERA_THEAB RecName: Full=GTPase Era
 gi|217036867|gb|ACJ75389.1| era GTP-binding protein Era [Thermosipho africanus TCF52B]
          Length = 299

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 27/197 (13%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + + G  N GKSS+ NA+  K + IV+D P TTR+ + +    + + +   DT 
Sbjct: 1   MKSGF-VALAGKPNVGKSSIVNAIVGKKILIVSDKPQTTRNRINVIHTTDDFQIIFVDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----------NIDFIFI 325
           GI +    + +  +K     ++  DLIL + +  +K+ +  P+              I +
Sbjct: 60  GIHKPLYRLGEYMVKAAVSALKGVDLILTVVD--AKEGVGKPERFVFDYVNQSKTKTIGV 117

Query: 326 GTKSDLYSTYTEEYDHL--------------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
             K DL      E  +                S+  GEG++EL++ I   L    +  P 
Sbjct: 118 INKIDLVDAKKVEQIYNEIKNSLENCVGIVKTSAVRGEGIKELLDLIVENLEEGPQYYPE 177

Query: 372 SIPSHKRHLYHLSQTVR 388
            + + +   +  S+ +R
Sbjct: 178 DMITDRPLSFMASEIIR 194


>gi|196248955|ref|ZP_03147655.1| GTP-binding protein Era [Geobacillus sp. G11MC16]
 gi|196211831|gb|EDY06590.1| GTP-binding protein Era [Geobacillus sp. G11MC16]
          Length = 302

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 74/194 (38%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +      +   +   DT 
Sbjct: 6   YKSGF-VAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDEAQIIFIDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGT 327
           G+ +    +    +K     +   DLIL +               E     N     +  
Sbjct: 65  GVHKPKHKLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLNEVNTPVFLVIN 124

Query: 328 KSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D         +   Y + Y       IS+  G  +E L+ +IK  L    +  P    
Sbjct: 125 KIDRVHPDELLPIIDRYKDLYPFAEIVPISALEGNNVERLLEQIKQRLPEGPQYYPPDQI 184

Query: 375 SHKRHLYHLSQTVR 388
           +     + +++ +R
Sbjct: 185 TDHPEQFIIAELIR 198


>gi|78776593|ref|YP_392908.1| GTP-binding protein EngA [Sulfurimonas denitrificans DSM 1251]
 gi|123550784|sp|Q30TK8|DER_SULDN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|78497133|gb|ABB43673.1| GTPase family protein [Sulfurimonas denitrificans DSM 1251]
          Length = 494

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 12/141 (8%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  E   N  KI I+G +N GKSSL NAL  ++ ++V+ + GTT D +   ++ +   + 
Sbjct: 226 EFDETDANHIKISIIGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDESMEYKDKQLT 285

Query: 271 ISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNI 320
             DTAG+R    I  +EK  + RT   +EN+++ L++ + +            +     +
Sbjct: 286 FVDTAGLRRRGKIVGIEKFALMRTKEMLENSNMALVVLDASEPFLDLDEKIAGLVDSNRL 345

Query: 321 DFIFIGTKSDLYSTYTEEYDH 341
             I +  K D+ +   +EYD 
Sbjct: 346 ACIIVLNKWDIANR--DEYDK 364



 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 14/164 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSSLFN L KK  AI +D+ GTTRDV    + +      + DT G+ + 
Sbjct: 3   KIAIIGRPNVGKSSLFNRLMKKRDAITSDVAGTTRDVKRRHVVIINKEALLLDTGGLDQG 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD-- 330
            ++ +K   +++    + AD+IL + +  S  E +  K          +   +  K D  
Sbjct: 63  CELFDKIK-EKSLEAAKKADIILYMVDGKSIPEDADKKLFYELQTLGKEVALVVNKIDND 121

Query: 331 -LYSTYTEEYDHLISSFTGEGLEEL--INKIKSILSNKFKKLPF 371
            L     + Y+    +  G  +     +N +   + ++  +   
Sbjct: 122 KLKDNLWDFYEFGTDAIFGISVSHNRSVNALLEWIYDRLPEEDI 165


>gi|225575644|ref|ZP_03784254.1| hypothetical protein RUMHYD_03737 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037154|gb|EEG47400.1| hypothetical protein RUMHYD_03737 [Blautia hydrogenotrophica DSM
           10507]
          Length = 93

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 350 GLEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAE 407
           G+++L+ KIK +  +           ++ R    L +    LE+           D  + 
Sbjct: 1   GIQDLVEKIKEMFFDGNITFNDEVYITNVRQKEALEEAYHSLELVEQSISMGMPEDFFSI 60

Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +L  A  +LG+I G    E L++ IFSKFC GK
Sbjct: 61  DLMNAYEALGRILGESVGEDLVNEIFSKFCTGK 93


>gi|99034460|ref|ZP_01314456.1| hypothetical protein Wendoof_01000738 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 405

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 11/170 (6%)

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
            DF     +    +  +++    L   I +     +L     +  +I I+G  N GKS+ 
Sbjct: 132 FDFLGPVYISAEHNLGMVDLYDALAGVIENFNENTELPNNELSRLRIAIIGRPNVGKSTF 191

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRT 292
            N L  ++  I +  PGTTRD + I  D +G L+ + DTAGIR      D +E   ++++
Sbjct: 192 LNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRKANVVDGLESRFVEKS 251

Query: 293 FLEVENADLILLLKE----INSKK----EISFPKNIDFIFIGTKSDLYST 334
              ++ + +++L+ +    I  +     E +       I +  K DL   
Sbjct: 252 MESIKRSHVVVLMLDSLVGIEQQDLSIGEAAIKGGKGIIVVLNKWDLIGK 301



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 17/180 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  NAGKS+LFN L  +  A+V++IPG TRD       +     K+ DT G  +
Sbjct: 2   LKIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKVIDTGGWND 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDL 331
             +    + I++    + N+++I  L +   + E        +    N   I +  K + 
Sbjct: 62  QTNFSL-QVIEQIEFSLSNSNIIFFLVDAKVQNERNEEFAKWLKRKINKPVILVANKCES 120

Query: 332 YSTYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           + +   +Y           IS+    G+ +L + +  ++ N  +          R    +
Sbjct: 121 HKSENVDYLQFFDFLGPVYISAEHNLGMVDLYDALAGVIENFNENTELPNNELSRLRIAI 180


>gi|15617192|ref|NP_240405.1| GTP-binding protein EngA [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681942|ref|YP_002468328.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|257471654|ref|ZP_05635653.1| GTP-binding protein EngA [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11132317|sp|P57662|DER_BUCAI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783141|sp|B8D8G4|DER_BUCA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|25328230|pir||C85000 hypothetical GTP-binding protein [imported] - Buchnera sp.  (strain
           APS)
 gi|10039257|dbj|BAB13291.1| hypothetical GTP-binding protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219624785|gb|ACL30940.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
          Length = 453

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 87/203 (42%), Gaps = 29/203 (14%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
              K  I+ ++   K  E+ +   K+  +G  N GKS+L N + K++  I ++ PGTT D
Sbjct: 166 EKFKKKITENL--YKDTELKKIAIKVAFIGRPNVGKSTLINGILKEERMITSNTPGTTLD 223

Query: 257 VLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEIN---S 310
            ++  +        + DTAG  +     +  ++  I +T   +E +++ILL+ + +    
Sbjct: 224 SISTPIKYNYENYTLIDTAGASKKKKKINDFQRFSIIKTLQTIEKSNVILLIIDASLQTC 283

Query: 311 KKEISFPK-----NIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGE 349
            +++S            + +  K DL+++   +                  H IS+   +
Sbjct: 284 HQDLSLADFIIHSGKGIVVVVNKCDLFNSVELKKIKELIKSKLKFLYFSKIHFISALYKK 343

Query: 350 GLEELINKIKSILSNKFKKLPFS 372
           G+ +L   IK    +  +K+  S
Sbjct: 344 GIFQLFKSIKESYEDSKRKISTS 366



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 18/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           IV++G +N GKS+LFN L K   A+V + PG TRD       L+    + + DTAG+   
Sbjct: 5   IVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKIILIDTAGLDIK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNI-----DFIFIGTKSDLY 332
            + +EK+   +T + ++ A LIL L         +E    KNI       I +  K D  
Sbjct: 65  LNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVINKIDGI 124

Query: 333 STYTE---------EYDHLISSFTGEGLEELINK 357
           +  ++         E    IS+   +G+  LIN+
Sbjct: 125 NEASKINEFYSLGFEKIQKISASHNQGINTLINR 158


>gi|269956364|ref|YP_003326153.1| cytidylate kinase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305045|gb|ACZ30595.1| cytidylate kinase [Xylanimonas cellulosilytica DSM 15894]
          Length = 725

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD +T   +  G    + DT G     
Sbjct: 293 LAIIGRPNVGKSTLVNRVIGRREAVVEDKPGVTRDRVTYPAEWAGREFHVVDTGGWEVDV 352

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
             +E +  ++  + +  AD ++ + +             E+        +    K D  S
Sbjct: 353 AGIESKVAEQAEVAITLADAVMFVVDATVGATATDERVVELLRRSGKPVVLAANKVDGPS 412

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              +            H IS+  G G+ +L+    ++L    +    
Sbjct: 413 GEADAAYLWSLGLGEPHPISALHGRGVGDLLEAAMAVLPKVSEHGEL 459



 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 77/202 (38%), Gaps = 28/202 (13%)

Query: 199 LKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           L+  ++      + GE+   G + + ++G  N GKSSL N +A  +  +V +I GTTRD 
Sbjct: 443 LEAAMAVLPKVSEHGELRPTGPRRVALVGRPNVGKSSLLNKVAGSERVVVDEIAGTTRDP 502

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           +   + L+G      DTAGIR         +     RT   +E A++ ++L + +     
Sbjct: 503 VDELILLKGVPYWFVDTAGIRRRVHQTSGADFYASLRTAAAIEKAEVAVVLLDASQPLTE 562

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEG 350
                 +         +    K DL       Y                   +S+ TG  
Sbjct: 563 QDTRVLQQVVDAGRALVIAYNKWDLMDEDRRPYLEREIEKELVQLTWAPRVNVSARTGWH 622

Query: 351 LEELINKIKSILSNKFKKLPFS 372
            + L   ++  L +   ++P  
Sbjct: 623 TDRLAGAVERSLESWDMRIPTG 644


>gi|160878804|ref|YP_001557772.1| GTP-binding protein Era [Clostridium phytofermentans ISDg]
 gi|160427470|gb|ABX41033.1| GTP-binding protein Era [Clostridium phytofermentans ISDg]
          Length = 305

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 84/208 (40%), Gaps = 22/208 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             +  ++G+   ++G  N GKS+L N L  + +AI +D P TTR+ +      E   +  
Sbjct: 4   QEKKYKSGF-ATLIGRPNVGKSTLMNQLIGQKIAITSDKPQTTRNRIQTVYTEEQGQIIF 62

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFI 323
            DT GI +  + + +  +      +   D+IL L E    I + ++    K        I
Sbjct: 63  LDTPGIHQAKNKLGQFMVNIAERTINEVDVILWLVEPSTFIGAGEQHIIEKLNKSKTPVI 122

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K D             Y ++ +      +S+  GE  ++LI+ I   L N      
Sbjct: 123 LVINKIDTVKKQEILTFIDAYRDKCNFAEIVPVSALKGENKQQLIDVIFKYLPNGPMYFD 182

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               + +     +++ +R   +  L+++
Sbjct: 183 EDTVTDQPERQIVAELIREKALRLLSDE 210


>gi|291571472|dbj|BAI93744.1| GTP-binding protein Era homolog [Arthrospira platensis NIES-39]
          Length = 310

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 23/217 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+L N L  + +AI + I  TTR+ L   L  +   +   D
Sbjct: 14  EGYKSGF-VGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTDSAQIIFVD 72

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFI-- 325
           T GI +    + K  +K   L + + D+++ + + +       +  +    +     I  
Sbjct: 73  TPGIHKPHHQLGKVLVKNAKLAIASVDVLVFVVDSSVMSGGGDRYIVDLLTHTKVPVILG 132

Query: 326 GTKSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPF 371
             K DL     E  D                 S+ TG G+E L N + + L       P 
Sbjct: 133 LNKWDLQPDQYEAIDQSYQQFAEANQWQMVKFSAVTGAGVETLQNLLINSLDPGPYYYPP 192

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            + + +   + + + +R   +    E+      IA +
Sbjct: 193 DLVTDQPERFIMGELIREQILLHTREEVPHSVAIAID 229


>gi|291520563|emb|CBK75784.1| GTP-binding protein Era [Butyrivibrio fibrisolvens 16/4]
          Length = 302

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 84/209 (40%), Gaps = 22/209 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           + I+G  N GKS+L N +  + +AI ++ P TTR+ +      E    +   DT G+ + 
Sbjct: 9   VTIVGRPNVGKSTLMNHIIGQKIAITSNKPQTTRNRIQTVYTDENVGQIVFLDTPGMHQA 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            + + +  +      + + DLIL L E ++K         E+        I +  K D+ 
Sbjct: 69  KNKLGEYMMSAAKSTINDVDLILWLIEPDTKVGAGDKKIAELLATAEAPVILVINKIDMA 128

Query: 333 S---------TYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      + +  D      +S+  GEG ++L+  I   L            +++  
Sbjct: 129 DGAKVGETIQAFKDLCDFIEVVPVSALHGEGCDDLLATIFKHLPEGPAFYDEETVTNQTL 188

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
               ++ +R   + +LN++      IA +
Sbjct: 189 REITAEIIREKSLHALNDEVPHGIAIAID 217


>gi|227495416|ref|ZP_03925732.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces
           coleocanis DSM 15436]
 gi|226830963|gb|EEH63346.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces
           coleocanis DSM 15436]
          Length = 727

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKSSL N LA  D  +V D+ GTTRD +   ++++G      DTAG+R  
Sbjct: 468 RIALIGRPNVGKSSLLNQLAGSDRVVVNDLAGTTRDPVDELIEIDGRPWWFVDTAGVRRK 527

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
                  +     RT   +E A+L L+L + + K         + +       + I  K 
Sbjct: 528 MHRTTGADYYASIRTQAALEKAELALVLLDASEKMTEQDVRVVQAAIDAGRAVVIINNKW 587

Query: 330 DLYSTYTEE---YDHLI-------------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL      E   ++H               S+ TG     ++  +   L+    ++   
Sbjct: 588 DLVDEDRREQLKFEHERELKQIQWASRINLSAKTGWHTNRIVRAMDEALAGWETRISTG 646



 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N + ++  A+V D PG TRD ++      G    + DT G     
Sbjct: 294 LAIIGRPNVGKSTLVNRILERRAAVVQDTPGVTRDRVSYPAQWAGRDFTLVDTGGWEMDV 353

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             ++K    +  + +E AD ++ + +              +    N   +    K D  +
Sbjct: 354 KGLDKSVADQAEIAIEMADAVIFVVDATVGATHTDEQLVRVLRRSNKPILLAANKVDSAN 413

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILS 363
              +              +S+  G G  +L++K   IL 
Sbjct: 414 QEADAAYLWSLGLGEPFPVSALHGRGAGDLLDKAMEILP 452


>gi|225175916|ref|ZP_03729908.1| small GTP-binding protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168504|gb|EEG77306.1| small GTP-binding protein [Dethiobacter alkaliphilus AHT 1]
          Length = 419

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 20/172 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  NAGKSSL NAL  +D+A+V+ +PGTT D +   +++     V + DTAG+ 
Sbjct: 10  LHIAIFGKRNAGKSSLINALTNQDIALVSSVPGTTTDPVYKAMEILPLGPVVLIDTAGLD 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSD 330
           +  ++ E   ++R+   +  ADL+LL+ +        ++EIS     K++  + +  K+D
Sbjct: 70  DEGELGELR-VQRSRAVLNKADLVLLVLDGADVPGVFEEEISRLCQKKDVPVVGVLNKAD 128

Query: 331 L----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +          ++   ++   ++S+ TG G+ +L   +      K+ +L   
Sbjct: 129 VNAPDKLTVEAFTRLLQKEPQVVSAATGAGIGQLKIAMIQSAPEKWDELSIV 180


>gi|154249358|ref|YP_001410183.1| GTP-binding protein Era [Fervidobacterium nodosum Rt17-B1]
 gi|154153294|gb|ABS60526.1| GTP-binding protein Era [Fervidobacterium nodosum Rt17-B1]
          Length = 301

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 24/221 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           ++I++G+    +G  N GKSS+ NA+ KK V IV++ P TTR+ + +    + + +   D
Sbjct: 2   QLIKSGF-ASFVGKPNVGKSSIINAIMKKKVVIVSEKPQTTRNRINVIYTTDDFQIVFVD 60

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFI 325
           T GI +    + +  +K     ++N DL+L   +     E      I +        I +
Sbjct: 61  TPGIHKPLHRLGEYMVKAAVQALKNVDLLLFTVDAKEGFETPEEYIIEYVNQSKTPVIGV 120

Query: 326 GTKSDLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             K DL      +                   S+ TGEGL++L+  I   L    +  P 
Sbjct: 121 INKIDLVDRERIDSIEEIMRKKVENLKEVVKTSAVTGEGLDKLLEVIVENLPEGPQFYPE 180

Query: 372 SIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRL 411
            I   +   + +S+ +R  +   +  E    + +I E ++ 
Sbjct: 181 DIVVDRPLSFIVSELIREKIFHFTYEEVPHSVAVIVEEIKE 221


>gi|227432225|ref|ZP_03914221.1| GTP-binding protein Era [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351998|gb|EEJ42228.1| GTP-binding protein Era [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 303

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 74/190 (38%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   V   DT G+ +  
Sbjct: 11  VAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDDAQVVFIDTPGVHKPQ 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDL- 331
           + +    +K  F  +  AD I  + +    +          +   KN     +  K DL 
Sbjct: 71  NSLGDFMVKSAFSALHEADAIWFVVDAAMARGRGDDFIIDRLQEVKNTPIYLLINKVDLL 130

Query: 332 --------YSTYTEEYDHL-----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                    ++Y  +         IS+  G+ + EL++ I S L    +       +   
Sbjct: 131 APNDLLDVIASYQNDASEWAEVFPISATEGDNVPELLDNIVSHLDEGPQYFDADQLTDHP 190

Query: 379 HLYHLSQTVR 388
             + + + +R
Sbjct: 191 ERFVIGELIR 200


>gi|46205398|ref|ZP_00048589.2| COG1160: Predicted GTPases [Magnetospirillum magnetotacticum MS-1]
          Length = 135

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 9/116 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+LFN L  + +A+V D PG TRD    D  +     +I DTAG+ E D
Sbjct: 6   VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGDGSIGDVTFRIIDTAGLEEAD 65

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
            D +      +T   +  +D +L + +  +          E+        I I  K
Sbjct: 66  ADSLLGRMRAQTEAAILESDAVLFVIDARAGVLPADRPFAELVRRAGCPVILIANK 121


>gi|153810738|ref|ZP_01963406.1| hypothetical protein RUMOBE_01122 [Ruminococcus obeum ATCC 29174]
 gi|149833134|gb|EDM88216.1| hypothetical protein RUMOBE_01122 [Ruminococcus obeum ATCC 29174]
          Length = 302

 Score = 96.9 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 81/216 (37%), Gaps = 22/216 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+   I+G  N GKS+L N L  + +AI +  P TTR+ +      E   +   D
Sbjct: 3   ENFKSGF-TAIIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTCEDGQIVFLD 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFI 325
           T GI +  + + +  ++     +++ D+IL L E         +      K  ++  I +
Sbjct: 62  TPGIHKAKNKLGEYMVQVAERTLKDVDVILWLVEPTTFIGAGERHIAEQLKGLHLPVILV 121

Query: 326 GTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D                 Y  +     S+   +  E++I  I   L          
Sbjct: 122 INKVDTVDKDEILKAIDTYRKLYDFDEIIPCSALRNQNTEDIIPCILKYLPYGPMFYDED 181

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
             + +      ++ +R   + +L+ +      +A +
Sbjct: 182 TVTDQPQRQIAAEIIREKALHALDAEIPHGIAVAID 217


>gi|22328152|ref|NP_201448.2| GTP binding / RNA binding [Arabidopsis thaliana]
 gi|17473914|gb|AAL38371.1| GTP-binding protein-like [Arabidopsis thaliana]
 gi|20259794|gb|AAM13244.1| GTP-binding protein-like [Arabidopsis thaliana]
 gi|332010835|gb|AED98218.1| GTP-binding protein Era [Arabidopsis thaliana]
          Length = 427

 Score = 96.9 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 112/284 (39%), Gaps = 37/284 (13%)

Query: 141 MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
                +    +    +            RSF E +++ ++ ED +     +++++   L 
Sbjct: 40  KSHLQAHNSTTSYGRTELSSSKKLWIRQRSFSEMEVEQAQLEDDEEQVEIDIVDEASLLS 99

Query: 201 NDIS-----SHISQGKLGEI-------IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
             +      + +   ++ E+        R+GY + ++G  N GKS+L N +  + ++IVT
Sbjct: 100 LSMKPDRNMALLDDYEMEELGHTPNTHHRSGY-VAVVGMPNVGKSTLSNQMIGQKISIVT 158

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKE 307
           D P TTR  +        Y + + DT G+ E     ++   +K       NAD +++L +
Sbjct: 159 DKPQTTRHRILGICSSPEYQMILYDTPGVIEKKMHRLDTMMMKNVRDAAINADCVVILVD 218

Query: 308 I----NSKKEI------SFPKNIDFIFIGTKSDL------------YSTYTE-EYDHLIS 344
                 + +E+         K    + +  K DL            Y  +T+ +    +S
Sbjct: 219 ACKTPTNIEEVLKEGLGDLEKKPPMLLVMNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 278

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           +  G G+E++   I S L       P  I S     + +S+ VR
Sbjct: 279 AKYGHGIEDVKEWILSKLPFGPPYYPKDIVSEHPERFFVSEIVR 322


>gi|323705546|ref|ZP_08117120.1| small GTP-binding protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535023|gb|EGB24800.1| small GTP-binding protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 411

 Score = 96.9 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 20/172 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  NAGKSS+ NAL  +++AIV+D+ GTT D +   +++     V I DTAG+ 
Sbjct: 10  LHISIFGRRNAGKSSIINALTNQNIAIVSDVAGTTTDPVHKAMEILPIGPVVIIDTAGLD 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
           +T ++ E   +K+T+  +   DL LL+ +             +    KNI  + +  K+D
Sbjct: 70  DTGELGELR-VKKTYEVLNRTDLALLVIDGMVGPSKFEEEILDKIREKNIPVVGVLNKAD 128

Query: 331 LYS-TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L    + ++ D            S+ +G G+EEL  +I        K+L   
Sbjct: 129 LAQFNFIQKADWEKRLKLELVETSANSGYGIEELKRQIIKKAPYDDKELSLV 180


>gi|66815479|ref|XP_641756.1| hypothetical protein DDB_G0279259 [Dictyostelium discoideum AX4]
 gi|60469791|gb|EAL67778.1| hypothetical protein DDB_G0279259 [Dictyostelium discoideum AX4]
          Length = 841

 Score = 96.9 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 14/172 (8%)

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSH-ISQGKLGEIIRNG-YKIVILGHSNAGK 232
            L F E           V +    + +      +S  KL E ++ G  +I I+G  NAGK
Sbjct: 298 RLGFGEPIPFSAHHGDNVHSMFELILSQFPHMDLSLEKLEEDLKPGPIRISIVGQPNAGK 357

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIV---EKEG 288
           SSL N + +++ +IV+DIPGTT D +  +      + + + DTAGIR         EK  
Sbjct: 358 SSLLNKIIEEERSIVSDIPGTTHDPVDCNFLWRDTHELSLIDTAGIRRRSTHKIGLEKSS 417

Query: 289 IKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLY 332
           +      +E + ++ ++ +     +++++             I I  K DLY
Sbjct: 418 VLWALKAIEKSHVVFIVIDATIGITEQDLKIASFVVENRKSMIIIVNKWDLY 469



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 17/159 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           + I N   I I+G  N GKS++FN +   +  A+V +IPGTTRD    +  L G    + 
Sbjct: 147 KPISNKPVIAIIGKPNVGKSTIFNRIIEGQRRALVEEIPGTTRDRYYGEGFLYGREFILV 206

Query: 273 DTAGI--RETDDIVEKEGI--KRTFLEVENADLILLLKEINS-----KKEISFPKNIDFI 323
           DT G+     +D  + +G+   +  + +E AD IL + +  S      KE++        
Sbjct: 207 DTGGLIGESKEDKDQFQGVIQDQAEIAMEEADAILFVLDYKSGLTSIDKELARMLRSKRQ 266

Query: 324 FIG-------TKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            +G        K+D  S   E+++ + +  T  G  E I
Sbjct: 267 KLGKPIYIGVNKADNVSMRGEDFEEMKTQITRLGFGEPI 305


>gi|229824094|ref|ZP_04450163.1| hypothetical protein GCWU000282_01398 [Catonella morbi ATCC 51271]
 gi|229786448|gb|EEP22562.1| hypothetical protein GCWU000282_01398 [Catonella morbi ATCC 51271]
          Length = 301

 Score = 96.9 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 79/206 (38%), Gaps = 22/206 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+L N    + +AI++D   TTR+ +   L  +   +   D
Sbjct: 4   EAFKSGF-VAIIGRPNVGKSTLLNRFVGQKIAIMSDKAQTTRNRIQGVLTTDQAQIVFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           T GI +    +    +   +  ++  D +L +     K         E      +    +
Sbjct: 63  TPGIHKPKHALGDFMVNTAYSALKGVDAVLFVVNAAEKMGPGDRLIMERIQNVKVPVFLV 122

Query: 326 GTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL              +  + +    IS+  G  + EL+ K++  L    K  P S
Sbjct: 123 INKIDLVKPDDLLPIIEGYQAVRSFDQVFPISATQGNNVPELVAKLQEALPEGPKYYPDS 182

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEK 398
                   + +++ +R   +    E+
Sbjct: 183 QIMDHPEYFVVAEFIREKILLLTQEE 208


>gi|218781247|ref|YP_002432565.1| GTP-binding protein Era [Desulfatibacillum alkenivorans AK-01]
 gi|218762631|gb|ACL05097.1| GTP-binding protein Era [Desulfatibacillum alkenivorans AK-01]
          Length = 297

 Score = 96.9 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ I ++G  N GKS+L N +  + V+I +  P TTR+ +   +  E   + + D
Sbjct: 3   ENFKSGF-IGMIGAPNVGKSTLLNQMLGEKVSITSSKPQTTRNRILGVVHREKAQLVMLD 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFI 325
           T GI      + K  +      + + DLI+ + + +     S          + +  I +
Sbjct: 62  TPGIHSAKSPLNKHMVDVAMQCMGDVDLIMFVVDASKPDPNSERLALKGLAKQKMPVILV 121

Query: 326 GTKSDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL    T              +    +S+ TGE +EELI  ++  L       P  
Sbjct: 122 LNKIDLIKKETLLPLIAKLEPLADFKAIVPVSAETGEQVEELIAILEEQLPQGPPFFPED 181

Query: 373 IPSHKRHLYHLSQTVR 388
             +     +  ++ +R
Sbjct: 182 SLTDMPERFVAAEMIR 197


>gi|51473231|ref|YP_066988.1| GTP-binding protein Era [Rickettsia typhi str. Wilmington]
 gi|81390309|sp|Q68XY6|ERA_RICTY RecName: Full=GTPase Era
 gi|51459543|gb|AAU03506.1| Era-like GTP-binding protein [Rickettsia typhi str. Wilmington]
          Length = 295

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 88/204 (43%), Gaps = 27/204 (13%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I+    + I+G  N+GKS+L N +  + ++IVT    TTR ++T  + L+   + + DT 
Sbjct: 5   IQKTISVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQIILYDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI----------FI 325
           GI E   ++EK  ++  +  + +ADL+L +  I+S K +    +              F+
Sbjct: 65  GIFEPKGMLEKAMVRCAWSSLYSADLVLSI--IDSLKPLDDMAHNILNQFCLLNIVPIFL 122

Query: 326 GTKSDLYSTYTEEYD------------HLISSFTGEGLEELINKIKS---ILSNKFKKLP 370
             K D+ S Y  +                IS+  G+ ++ L+  IKS   +    +    
Sbjct: 123 LNKIDIESKYLNDIKAFLKISHPKSLLFPISALCGKNVDVLLKYIKSKAKVSPWLYADDD 182

Query: 371 FSIPSHKRHLYHLSQTVRYLEMAS 394
            +    +     +++   +L +  
Sbjct: 183 ITNLPMRFIAAEITREQLFLNLQQ 206


>gi|26006713|sp|Q8NQK6|DER_CORGL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|21324196|dbj|BAB98821.1| Predicted GTPases [Corynebacterium glutamicum ATCC 13032]
          Length = 519

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N    +  A+V D PG TRD ++   D  G+   + DT G     
Sbjct: 83  VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYISDWGGHRFWVQDTGGWDPNV 142

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
             +     ++  + +  AD+I+ + +    I     +   K     +  I +  K D  S
Sbjct: 143 KGIHASIAQQAEVAMSTADVIVFVVDTKVGITETDSVMAAKLLRSEVPVILVANKFDSDS 202

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            + +  +           +S+  G G  ++++K+  +   + +     
Sbjct: 203 QWADMAEFYSLGLGDPYPVSAQHGRGGADVLDKVLELFPEEPRSKSIV 250



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 86/233 (36%), Gaps = 33/233 (14%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
               S +       + + +     +    + I  G + + ++G  N GKSSL N  A + 
Sbjct: 218 PYPVSAQHGRGGADVLDKVLELFPEEPRSKSIVEGPRRVALVGKPNVGKSSLLNKFAGET 277

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENAD 300
            ++V ++ GTT D +   + L+  L K  DTAG+R   +T    E     RT   ++ A+
Sbjct: 278 RSVVDNVAGTTVDPVDSLIQLDQKLWKFVDTAGLRKKVKTASGHEYYASLRTHGAIDAAE 337

Query: 301 LILLLKEINS-----------------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-- 341
           L +LL + +                  K  +      D +    + DL      +  H  
Sbjct: 338 LCVLLIDSSEPITEQDQRVLAMITDAGKALVIAFNKWDLMDEDRRIDLDRELDLQLAHVP 397

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
                 IS+ TG  L+ L   +   L N  +++     +       L + +  
Sbjct: 398 WAKRINISAKTGRALQRLEPAMLEALDNWDRRISTGQLNTW-----LREAIAA 445


>gi|311087969|gb|ADP68048.1| GTP-binding protein EngA [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 441

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 87/203 (42%), Gaps = 29/203 (14%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
              K  I+ ++   K  E+ +   K+  +G  N GKS+L N + K++  I ++ PGTT D
Sbjct: 166 EKFKKKITENL--YKDTELKKIAIKVAFIGRPNVGKSTLINGILKEERMITSNTPGTTLD 223

Query: 257 VLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEIN---S 310
            ++  +        + DTAG  +     +  ++  I +T   +E +++ILL+ + +    
Sbjct: 224 SISTPIKYNYENYTLIDTAGASKKKKKINDFQRFSIIKTLQTIEKSNVILLIIDASLQTC 283

Query: 311 KKEISFPK-----NIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGE 349
            +++S            + +  K DL+++   +                  H IS+   +
Sbjct: 284 HQDLSLADFIIHSGKGIVVVVNKCDLFNSVELKKIKELIKSKLKFLYFSKIHFISALYKK 343

Query: 350 GLEELINKIKSILSNKFKKLPFS 372
           G+ +L   IK    +  +K+  S
Sbjct: 344 GIFQLFKSIKESYEDSKRKISTS 366



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 18/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           IV++G +N GKS+LFN L K   A+V + PG TRD       L+    + + DTAG+   
Sbjct: 5   IVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKIILIDTAGLDIK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNI-----DFIFIGTKSDLY 332
            + +EK+   +T + ++ A LIL L         +E    KNI       I +  K D  
Sbjct: 65  LNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVINKIDGI 124

Query: 333 STYTE---------EYDHLISSFTGEGLEELINK 357
           +  ++         E    IS+   +G+  LIN+
Sbjct: 125 NEASKINEFYSLGFEKIQKISASHNQGINTLINR 158


>gi|292806496|gb|ADE42378.1| GTP-binding protein-like protein [Helicobacter pylori]
          Length = 170

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + ++LIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSNLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +S++       IS     G+  LI+ +   L
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRAL 166


>gi|260655937|ref|ZP_05861406.1| GTP-binding protein Era [Jonquetella anthropi E3_33 E1]
 gi|260629553|gb|EEX47747.1| GTP-binding protein Era [Jonquetella anthropi E3_33 E1]
          Length = 303

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 81/208 (38%), Gaps = 24/208 (11%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            + G  N GKSSL N L    +++VT  P TTRD +    + E   +   DT G+ E + 
Sbjct: 11  ALAGRPNVGKSSLVNRLLDFRLSVVTPKPQTTRDAILGLYNDEDCQIVFVDTPGVHEPEH 70

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK---------NIDFIFIGTKSDL-- 331
            + +  + R    ++ AD+IL +  I+ +   S  +             I    K DL  
Sbjct: 71  RLGERLVDRALEALDEADVILYVVTIDDRPFWSENRTIIGRLKETKTPVILCVNKVDLPG 130

Query: 332 --------YSTYTEEYDHLI----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                    S + +E D       S+  G   E L+  +KS L       P    + +  
Sbjct: 131 SREKILPVISLFQKELDIRDAIPVSARDGTHRELLLQTVKSYLPEGVPLYPDDQVTDRPE 190

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAE 407
            +  ++ +R   M  + E++    +  E
Sbjct: 191 RFLAAEIIRGKAM-EMTEEEVPHSLAVE 217


>gi|311742420|ref|ZP_07716229.1| ribosome-associated GTPase EngA [Aeromicrobium marinum DSM 15272]
 gi|311314048|gb|EFQ83956.1| ribosome-associated GTPase EngA [Aeromicrobium marinum DSM 15272]
          Length = 450

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  +    G    + DT G     
Sbjct: 17  LAVIGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVAYEATWNGRTFTVVDTGGWDPDA 76

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             + +    +  + V+ AD +L + +          +  +I        +    K D   
Sbjct: 77  RGLAERIAAQAEIAVQVADAVLFVVDATIGITDSDEAVVKILRAAGKPVVLAANKVDDQR 136

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKK 368
           T  E               S+  G G  ++++ I  +L +   +
Sbjct: 137 TEAEAASLWNLGLGEPFPVSALHGRGSGDMLDAILGVLPDAPPE 180



 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/331 (19%), Positives = 122/331 (36%), Gaps = 52/331 (15%)

Query: 93  NGILEELAKMPNLRLANPGEFSRRAF---ENGKIDLLEAESLADLISSETEMQRRLSME- 148
             ++E++  +   R+A    ++ R F   + G  D  +A  LA+ I+++ E+  +++   
Sbjct: 39  EAVVEDVPGVTRDRVAYEATWNGRTFTVVDTGGWDP-DARGLAERIAAQAEIAVQVADAV 97

Query: 149 --------GMSGELSSLYGQWI----------DKLTHIRSFIEADLDFSEEEDVQNFSSK 190
                   G++    ++               +K+   R+  EA   ++         S 
Sbjct: 98  LFVVDATIGITDSDEAVVKILRAAGKPVVLAANKVDDQRTEAEAASLWNLGLGEPFPVSA 157

Query: 191 EVLNDILFLKNDISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
                   + + I   +     +  +      ++ I+G  N GKSSL N LA ++  +V 
Sbjct: 158 LHGRGSGDMLDAILGVLPDAPPEDFDAPEGPRRVAIVGKPNVGKSSLLNRLAGEERVVVD 217

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLL 305
           D  GTT D +   ++L G L    DTAGIR         E     RT   +E A++ +++
Sbjct: 218 DASGTTVDPVDELVELGGGLWTFIDTAGIRRRVRDASGHEYYASLRTSAAIERAEVAVMI 277

Query: 306 KEINSK------KEISFPKNIDFIFIG--TKSD---------LYSTYTEEYD-------H 341
            + +        + IS         +    K D         L      E          
Sbjct: 278 IDASQPLTEQDTRIISTVAETGRALVIAFNKWDQVDEERRYYLDREIERELVQVQWAPRI 337

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            I++ TG  ++ L+  + S L     ++P  
Sbjct: 338 NIAALTGWHVDRLVRALDSALDGWETRVPTG 368


>gi|217074544|gb|ACJ85632.1| unknown [Medicago truncatula]
          Length = 319

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 15/148 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRE- 279
           I I+G  N GKSS+ NAL  +D  IV+ I GTTRD +  +    +G    + DTAGIR+ 
Sbjct: 54  ISIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPDGQKFHLIDTAGIRKR 113

Query: 280 -----TDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIG 326
                     E   + R F  +  +D+  L+ E  +          E    +    + + 
Sbjct: 114 TTVASAGSTTEALSVNRAFRAIRRSDVGALVIEAMACITEQDYKIAERIEKEGKGCVIVV 173

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEEL 354
            K D      ++          E L  L
Sbjct: 174 NKWDTIPNKNQQAALYYEQDVREKLRLL 201


>gi|116492866|ref|YP_804601.1| GTPase [Pediococcus pentosaceus ATCC 25745]
 gi|122265670|sp|Q03F63|ERA_PEDPA RecName: Full=GTPase Era
 gi|116103016|gb|ABJ68159.1| GTPase [Pediococcus pentosaceus ATCC 25745]
          Length = 304

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 83/213 (38%), Gaps = 24/213 (11%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  +   +G+ + I+G  N GKS+  N +  + VAI++++P TTR+ +      +   + 
Sbjct: 3   ENNQAFHSGF-VAIVGRPNVGKSTFLNYVIGQKVAIMSNVPQTTRNKIQGIYTTDREQIV 61

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNID 321
             DT GI ++ + +    ++     +   D I+ +   +  +          +    +  
Sbjct: 62  FIDTPGIHKSHNKLGDFMVQSAMSSLNEVDAIMFMVNADEPRGAGDNYIIERLKKITDRP 121

Query: 322 FIFIGTKSDL---------YSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKK 368
              +  K DL           +Y +  D      IS+  G  + EL+  +   +    K 
Sbjct: 122 VYLVINKIDLVHPDELLPIVDSYKDAMDWTEVFPISALQGNNINELVTTLSQHMPEGPKY 181

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            P    +     + +S+ +R  ++  L  ++  
Sbjct: 182 YPDDQVTDHPERFVVSELIRE-KVLQLTRQEVP 213


>gi|122701619|emb|CAL88199.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L  + V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNSHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ + + L+
Sbjct: 129 EKERSYAFSSFGTPKSFNISVSHNRGISALIDAVLNALN 167


>gi|75910714|ref|YP_325010.1| GTP-binding protein Era [Anabaena variabilis ATCC 29413]
 gi|75704439|gb|ABA24115.1| Small GTP-binding protein [Anabaena variabilis ATCC 29413]
          Length = 337

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 97/248 (39%), Gaps = 23/248 (9%)

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++N +++  +  I    + +S  +S  +     ++G+ I I+G  N GKS+L N L  + 
Sbjct: 11  LENMTAELKVASIDNHISSLSGEVSIPQAPPEFKSGF-IGIIGRPNVGKSTLMNQLVGQK 69

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AI + +  TTR+ L   +      +   DT GI +    + +  +K   L +E+ D++L
Sbjct: 70  IAITSPVAQTTRNRLRGIVTTPEAQLIFVDTPGIHKPHHQLGEVLVKNAKLAIESVDVVL 129

Query: 304 LLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYD--------------H 341
            + +             ++        I    K D   + ++  D               
Sbjct: 130 FVVDGTVACGAGDRFIADLLIHSKTPVILGINKVDQQPSDSQNIDDSYQQLASAYQWPTV 189

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
             S+ TG  L +L   +   L +     P  + + +   + + + +R   +    E+   
Sbjct: 190 KFSAKTGAELPQLQELLVEHLEHGPYYYPPDLVTDQPERFIMGELIREQILLLTREEVPH 249

Query: 402 LDIIAENL 409
              IA +L
Sbjct: 250 SVAIAIDL 257


>gi|225849321|ref|YP_002729485.1| GTP-binding protein Era [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643668|gb|ACN98718.1| GTP-binding protein Era [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 300

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +    ++IV+  P TTR  +     L    +   D  G+++  
Sbjct: 8   VALVGRPNVGKSTLLNNILGTKLSIVSPKPQTTRMRILGVKHLPDAQIIFLDAPGVQKGG 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI------DFIFIGTKSD-- 330
           D++ K  ++     +E+AD+I+++ E +   +K++    +N         I    K D  
Sbjct: 68  DLLSKSVLESAVASMEDADVIVMIIEADKGWTKEDKEIVENYIKKYNKPVILAINKIDKI 127

Query: 331 -------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  L    T+ YD      IS+     ++EL+N IK  L       P  + +    
Sbjct: 128 QRDLVLPLIEESTKIYDFKEYVPISAIKNINIDELLNTIKKYLPESPPLYPEDMITDLPL 187

Query: 380 LYHLSQTVR 388
              +++ +R
Sbjct: 188 KLWIAEIIR 196


>gi|289706512|ref|ZP_06502865.1| ribosome-associated GTPase EngA [Micrococcus luteus SK58]
 gi|289556770|gb|EFD50108.1| ribosome-associated GTPase EngA [Micrococcus luteus SK58]
          Length = 512

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 95/262 (36%), Gaps = 30/262 (11%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           T+      +      +     +  D +    +     L F     V     + V + +  
Sbjct: 170 TDEAVVSMLRRKDRPVIVAANKVDDMVQEADAATLWSLGFGYPYPVSAVHGRGVADLLDA 229

Query: 199 LKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
               +         G + R G + I ++G  N GKSSL N LA  D  +V D+ GTTRD 
Sbjct: 230 ALEALPE--ESAHGGLVPRGGPRRIALVGRPNVGKSSLLNKLAGSDRVVVDDLAGTTRDP 287

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEIN---SK 311
           +   ++L G L +  DTAGIR    +          RT   ++ A++ ++L E     S+
Sbjct: 288 VDELVELGGRLWRFVDTAGIRRRQHMAHGADYYASLRTASALDRAEVAVVLLEAPQVVSE 347

Query: 312 KEISFPK-----NIDFIFIGTKSD---------LYSTYTEEYDH-------LISSFTGEG 350
           +++   +         +    K D         L      +  H        IS+ TG  
Sbjct: 348 QDVRILQMVLDSGRALVIAFNKWDQVDEDRRLQLAKEIDRDLAHVAWAPRVNISAKTGWH 407

Query: 351 LEELINKIKSILSNKFKKLPFS 372
            + L+  +   L +   ++P  
Sbjct: 408 KDRLVPALDLALDSWDTRIPTG 429



 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 63/170 (37%), Gaps = 21/170 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D+PG TRD ++ D +  G    + DT G     
Sbjct: 77  LAIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDAEWNGREFTVVDTGGWEHDA 136

Query: 282 DIVEKEGIKRTFL-------------------EVENADLILLLKEINSKKEISFPKNIDF 322
             + +   ++  L                     + A  ++ +     +  I     +D 
Sbjct: 137 KGIHRRVAEQAELAVDVADAVVFVVDATVGMTATDEA--VVSMLRRKDRPVIVAANKVDD 194

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +     +    +    Y + +S+  G G+ +L++     L  +       
Sbjct: 195 MVQEADAATLWSLGFGYPYPVSAVHGRGVADLLDAALEALPEESAHGGLV 244


>gi|166030494|ref|ZP_02233323.1| hypothetical protein DORFOR_00155 [Dorea formicigenerans ATCC
           27755]
 gi|166029746|gb|EDR48503.1| hypothetical protein DORFOR_00155 [Dorea formicigenerans ATCC
           27755]
          Length = 428

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 10/197 (5%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSS+ NAL  +++AIV+DI GTT D +   ++L     V I DT G
Sbjct: 10  ERLHIGIFGKRNAGKSSVINALTGQNLAIVSDIKGTTTDPVLKSMELLPLGPVVIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFP--KNIDFIFIGTK 328
           + +  DI+ K  I++ +  +   D+ +L+ +         KK ++    KNI +I +  K
Sbjct: 70  LDDDADILGKLRIQKAYQMLNKTDIAILVIDGTVGMTEEDKKILTRIQDKNIPYIVVLNK 129

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           +DL +      D+   S     L+ +   I        + + +       ++  L + + 
Sbjct: 130 ADL-AVSKVCPDNQSDSDVCNTLDSIKADIVESCQIPSEHILWVSAQDHSNIQELKELIG 188

Query: 389 YLEMASLNEKDCGLDII 405
            L  +S N++    D+I
Sbjct: 189 KLIPSSDNDRYIVHDLI 205


>gi|311899123|dbj|BAJ31531.1| putative GTP-binding protein EngA [Kitasatospora setae KM-6054]
          Length = 484

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  +  A+V D PG TRD ++ +    G   K+ DT G  E D
Sbjct: 47  LAIVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVSYEAMWAGRRFKVLDTGGW-EID 105

Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLY 332
            +     +  +  L +E AD +L + +         ++   +        +    K D  
Sbjct: 106 VLGLDAMVAGQAELGIEQADAVLFVVDAKVGATDTEDALVRLIRRSGKPVVLCANKVDGP 165

Query: 333 STYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           ST  E            + +S+  G G  +L++ +  +L     +L
Sbjct: 166 STEAEAAYLWSLGLGEPYPVSALHGRGSGDLLDAVLKVLPEAPPQL 211



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 105/279 (37%), Gaps = 33/279 (11%)

Query: 127 EAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
           +A+++  ++ ++        ++  +            +K+    +  EA   +S      
Sbjct: 123 QADAVLFVVDAKVGATDTEDALVRLIRRSGKPVVLCANKVDGPSTEAEAAYLWSLGLGEP 182

Query: 186 NFSSKEVLNDILFLKNDISSHISQGK---LGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
              S         L + +   + +      G+ +  G   ++ ++G  N GKSSL N +A
Sbjct: 183 YPVSALHGRGSGDLLDAVLKVLPEAPPQLFGDGLAPGGPRRVALIGRPNVGKSSLLNKVA 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVE 297
            +D  +V ++ GTTRD +   ++L G   K  DTAGIR         +     RT   ++
Sbjct: 243 GEDRVVVNELAGTTRDPVDELIELGGKTWKFIDTAGIRRRVHQTAGADFYASLRTSAALD 302

Query: 298 NADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYSTYTEEY---------- 339
            A++ ++L + +            ++       +    K D        Y          
Sbjct: 303 KAEVAVVLVDASETLAEQDTRIISMAVEAGRAVVIAYNKWDQLDEERRFYLEREIERDLV 362

Query: 340 ------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                    +S+ TG  +E+L+  I++ L+    ++P +
Sbjct: 363 QVQWAPRVNVSAKTGRHMEKLVPAIETALAGWETRIPTA 401


>gi|148377384|ref|YP_001256260.1| GTP-binding protein Era [Mycoplasma agalactiae PG2]
 gi|226741223|sp|A5IXQ6|ERA_MYCAP RecName: Full=GTPase Era
 gi|148291430|emb|CAL58815.1| GTP binding protein era [Mycoplasma agalactiae PG2]
          Length = 290

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 32/224 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSL N + K D+AIV+++P TTRD +      +GY     DT GI +  
Sbjct: 6   ISILGRPNVGKSSLLNKIIKYDLAIVSNVPQTTRDQIMGVYTEDGYQFVFVDTPGIHKPL 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKNIDF--- 322
           +++ +   K  F  +++ D +L L  +                N+K +I+    ID    
Sbjct: 66  NLLGESLNKEAFSSLKDIDCVLFLSPVNEDIKSGDKLILERITNAKNKIAVISKIDLAKS 125

Query: 323 -IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
              I  K D    Y       +S+   + ++ LI  +K    N          + K   +
Sbjct: 126 PDEIAKKIDGLKEYGFNKIISVSNKNDKSVDSLIEILKEYAYNAPPFYDEDYITDKSMRF 185

Query: 382 HLSQTVRYLEMASLNEKDCGL---------DIIAENLRLASVSL 416
                  Y+  +++N     L         D I E+ R+   ++
Sbjct: 186 M---AKEYIRESAINLLTDELPHSIAVEVQDFIEEDDRITINAI 226


>gi|296112101|ref|YP_003622483.1| GTP-binding protein [Leuconostoc kimchii IMSNU 11154]
 gi|295833633|gb|ADG41514.1| GTP-binding protein [Leuconostoc kimchii IMSNU 11154]
          Length = 303

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 71/190 (37%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   V   DT G+ +  
Sbjct: 11  VAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDAAQVVFIDTPGVHKPQ 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + +    +K  F  +  AD I  + + +  +          +    N     +  K DL 
Sbjct: 71  NSLGDFMVKSAFSALHEADAIWFVVDASMPRGRGDDFIINRLQEVSNTPIYLLINKVDLI 130

Query: 333 STYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           S                       IS+  G+ + EL++ I + L    +       +   
Sbjct: 131 SPQDLLTIIASYQTDAPGWTEVFPISAREGDNVPELLDNIVANLEEGPQYFDADQLTDHP 190

Query: 379 HLYHLSQTVR 388
             + + + +R
Sbjct: 191 ERFVIGELIR 200


>gi|319943736|ref|ZP_08018017.1| GTP-binding protein EngA [Lautropia mirabilis ATCC 51599]
 gi|319742969|gb|EFV95375.1| GTP-binding protein EngA [Lautropia mirabilis ATCC 51599]
          Length = 504

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 27/196 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   ++ ++G  N GKS+L NAL  ++  I  + PGTTRD +T+D        ++ DTAG
Sbjct: 235 RKPVRVAVVGRPNGGKSTLINALLGEERLIAFNQPGTTRDSITVDFRYRNRDYQLIDTAG 294

Query: 277 IR---ETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFI 325
           +R   +  + VEK  + +T   +E+ ++ +L+ +         ++            +  
Sbjct: 295 LRRRGKVHETVEKFSVVKTLQAIEDCNVAVLMIDAADGISEQDSAIAGYILEAGRALVIA 354

Query: 326 GTKSDLYSTYTEEYDHL----------------ISSFTGEGLEELINKIKSILSNKFKKL 369
             K D                            IS+     L++L+  +    +   +KL
Sbjct: 355 LNKWDAVPADERRNVLQECQRRLYFLDWAPMLTISALKNRALDKLMKAVDEARAAATRKL 414

Query: 370 PFSIPSHKRHLYHLSQ 385
                +   H   L Q
Sbjct: 415 STPKLTRMLHAAVLHQ 430



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 18/157 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L +   A+V +IPG TRD       L+G  V + DT G     
Sbjct: 8   IALVGRPNVGKSTLFNRLTRSRDALVANIPGLTRDRHYGSATLDGQRVVLIDTGGFEPVA 67

Query: 282 DIVEKE-GIKRTFLEVENADLILLLKEINS-----KKEISFPKNIDFIFI---GTKSDLY 332
                E   ++T   V  AD+++ + +         +EI+         +     K +  
Sbjct: 68  ATGVAEQMARQTRQAVIEADVVVFVVDGRQGLLARDEEIAQELRRTARKVVLAVNKCEGI 127

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKS 360
           S      +           IS+  G+G+  L+ +   
Sbjct: 128 SRPVAAAEFHALGLGVPMPISATHGDGVHALMEECLE 164


>gi|255323406|ref|ZP_05364537.1| ribosome-associated GTPase EngA [Campylobacter showae RM3277]
 gi|255299443|gb|EET78729.1| ribosome-associated GTPase EngA [Campylobacter showae RM3277]
          Length = 467

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 99/239 (41%), Gaps = 33/239 (13%)

Query: 134 LISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD--------LDFSEEEDVQ 185
           ++ S+ +     ++  ++   + +  +   K   +RS+  A+        +  S    + 
Sbjct: 91  MMPSDEDKALYYALLKLNLPTALVINKIDSKKDELRSYEFANFGAKTSFAISVSHNAGID 150

Query: 186 NFSSKEVLNDILFLKNDISSHISQ-----GKLGEIIRN----------GYKIVILGHSNA 230
             +          ++ D+   + +     G  GE++R             ++ I+G  N 
Sbjct: 151 ELADWIYKQLKDEIRPDVGEDLDEFLENFGDDGEVVREMSAREDYERKNIQVGIIGRVNV 210

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEG 288
           GKSSL NAL K+  A+V+DI GTT D +      E  + +  DTAGIR+   I  +E+  
Sbjct: 211 GKSSLLNALVKESRAVVSDIAGTTIDPVNETFVYEDRVFEFVDTAGIRKRGKIEGIERYA 270

Query: 289 IKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           + RT   +E AD+ LL+ + +            ++    +  I +  K D      +++
Sbjct: 271 LNRTESALELADIALLVLDSSEPLTELDERIAGLAAKFELGVIIVLNKWDKSEEDFDKF 329



 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 18/164 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI+++G  N GKSSLFN LA + +AI +D+ GTTRD     +++      + D+ G+ ++
Sbjct: 3   KIILVGKPNVGKSSLFNRLAGRRIAITSDVSGTTRDTNKTIIEIYDRSCVLIDSGGLDDS 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLY 332
            ++  K    +T  E  ++D I+ + +      +  K +       N+    +  K D  
Sbjct: 63  SELF-KNVKAKTLAEARSSDAIIFMVDGKMMPSDEDKALYYALLKLNLPTALVINKIDSK 121

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFK 367
                 Y+            S     G++EL + I   L ++ +
Sbjct: 122 KDELRSYEFANFGAKTSFAISVSHNAGIDELADWIYKQLKDEIR 165


>gi|166364450|ref|YP_001656723.1| GTP-binding protein Era [Microcystis aeruginosa NIES-843]
 gi|166086823|dbj|BAG01531.1| GTP-binding protein ERA homolog [Microcystis aeruginosa NIES-843]
          Length = 318

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 76/199 (38%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L  + +AI + I  TTR+ L   +  E   +   DT GI +  
Sbjct: 29  IGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGIVTSERAQMIFVDTPGIHKPH 88

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSDLYS 333
             + K  +K     + + DL+L + + ++          ++        I    K+D   
Sbjct: 89  HELGKVLVKNAENAINSVDLVLFVVDSSNFLGSGDRYIADLLTKNQTPTILGLNKADQQP 148

Query: 334 TYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E  D                 S+  G G+EEL N +   L       P  + + +  
Sbjct: 149 EDREPLDDSYRTLAAENNWPLLKFSALEGTGIEELQNLLIDSLEVGPYYYPPDLVTDQPE 208

Query: 380 LYHLSQTVRYLEMASLNEK 398
            + + + +R   +    ++
Sbjct: 209 RFIMGELIREQILLQTRQE 227


>gi|154508812|ref|ZP_02044454.1| hypothetical protein ACTODO_01321 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798446|gb|EDN80866.1| hypothetical protein ACTODO_01321 [Actinomyces odontolyticus ATCC
           17982]
          Length = 517

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 38/227 (16%)

Query: 160 QWIDKLTHIRS-FIEADLDF--SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
           +  D+ T  R+  + A+LD    +EED+   + +  L D   +   +             
Sbjct: 35  ELSDEETEARARLMRANLDQFDLDEEDLALLAGESALADSDDVAAGL------------- 81

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
                + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G
Sbjct: 82  ---PVLAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYPAEWAGRDFTLVDTGG 138

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTK 328
                  +++   ++  + V+ AD ++L+ +             E+   K    I    K
Sbjct: 139 WEIDVKGLDRSVAEQAEIAVDLADAVVLVLDATVGVTASDERIVEMLRAKKKPIILAANK 198

Query: 329 SD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            D          L+S    E  H IS+  G G  +L++ +  +L  +
Sbjct: 199 VDSPLQEADAAYLWSLGLGE-PHPISALHGRGTGDLLDVVLEVLPTE 244



 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL NALA  +  +V ++ GTTRD +   ++L+G      DTAGIR  
Sbjct: 258 RVALVGRPNVGKSSLLNALAGGERVVVNELAGTTRDPVDELIELDGRSWWFVDTAGIRRK 317

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKS 329
                  +     RT   +E A++ L+L + ++          +         + +  K 
Sbjct: 318 MHRTTGADYYASIRTQAAIEKAEVALVLIDGSTPLTEQDVRVVQQVIDAGRALVVVTNKW 377

Query: 330 DLYSTYTEEYDHLI----------------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL     ++                     ++ TG     ++  + + L     ++P  
Sbjct: 378 DLVDEDRQKEIKNELERELVQIQWAPRINLAAKTGWHTNRIVRALDTALEGWETRIPTG 436


>gi|262067524|ref|ZP_06027136.1| GTP-binding protein Era [Fusobacterium periodonticum ATCC 33693]
 gi|291378787|gb|EFE86305.1| GTP-binding protein Era [Fusobacterium periodonticum ATCC 33693]
          Length = 297

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L  + VAIV+D  GTTRD +   L+++       DT GI +  
Sbjct: 6   IAIVGRPNVGKSTLINKLVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
            ++ +         +++ D+IL L + +             I    N   I +  K DL 
Sbjct: 66  HLLGEYMTNIAVNILKDVDIILFLVDASKSIGTGDIFVMDRIKENSNKPRILLVNKVDLI 125

Query: 333 STYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           S   +              +     S+    G+ +L+  +   L    K  P  + +   
Sbjct: 126 SDEQKAEKLKEIEEKLGKFDKIIFASAMYSFGIAQLLEALDPYLEEGVKYYPDDMYTDMS 185

Query: 379 HLYHLSQTVR 388
               +++ VR
Sbjct: 186 TYRIITEIVR 195


>gi|258545523|ref|ZP_05705757.1| GTP-binding protein EngA [Cardiobacterium hominis ATCC 15826]
 gi|258519223|gb|EEV88082.1| GTP-binding protein EngA [Cardiobacterium hominis ATCC 15826]
          Length = 463

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 18/164 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G  N GKS+L+NAL +   ++V+D PG TRD    D  L G   +I DT G
Sbjct: 13  RRKPLVALVGRPNVGKSTLYNALTRSRDSLVSDTPGLTRDRNYGDATLAGMPCRIVDTGG 72

Query: 277 -IRETDDIVEKEGIKRTFLEVENADLILLLKE-------INSKKEISFPK-NIDFIFIGT 327
            +RE +D +++   K+    VE AD+++ + +       ++        +     I    
Sbjct: 73  LLREEEDQIDRRVDKQARAAVEEADIVVFVVDGRDGLTAVDETIAAELRRSQKPVILAVN 132

Query: 328 KSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
           K+D         D           I++    GL++L  +I + L
Sbjct: 133 KTDFADPDLILADFYTLGIADTLAIAAEHRRGLQQLTQRIVTRL 176



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 79/182 (43%), Gaps = 28/182 (15%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277
           G  + ++G  NAGKS+L N L  ++  + + + GTTRD + I  +  +G    + DTAGI
Sbjct: 197 GIALAVIGRPNAGKSTLLNRLIGEERLVASPVAGTTRDAIAIPYEDAQGDRFTLIDTAGI 256

Query: 278 RET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIG 326
           R     +D +EK  I +T   +E A++++L+ + +   S+++         +    I   
Sbjct: 257 RRKARVNDKIEKFSIVKTLDAIERANVVILMLDAHEGVSEQDAHLLGEITRRGRALIIAI 316

Query: 327 TKSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            K D  +    +                    IS+  G  + +L+  +K +      +L 
Sbjct: 317 NKWDHLNDEQRQAIRSQFERKLHFVDYAEVFYISALHGSNIRQLLPAVKKVYRAAMAELS 376

Query: 371 FS 372
            +
Sbjct: 377 TN 378


>gi|116629756|ref|YP_814928.1| GTP-binding protein Era [Lactobacillus gasseri ATCC 33323]
 gi|116095338|gb|ABJ60490.1| GTPase [Lactobacillus gasseri ATCC 33323]
          Length = 303

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 21/208 (10%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              +  ++G+ + ++G  N GKS+L N L  + VAI++  P TTR+ ++     +   + 
Sbjct: 3   DEKKDYKSGF-VALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIV 61

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------KEISFPKNIDFI 323
             DT GI +  + ++    K ++  ++  D++L + E            E+         
Sbjct: 62  FIDTPGIHKPKNKLDDFMDKSSYSALDEVDVVLFMVEPEPAGKGDQYIAELLKKIKKPVF 121

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K D         +  +Y    D      IS+  G  + ELI  I   L    +   
Sbjct: 122 LVINKIDKVHPDKLLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAKYLPEGPQFYD 181

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               + +   + +++ +R   +   +E+
Sbjct: 182 ADQLTDRPEYFIVAELIREQVLKLTHEE 209


>gi|159899753|ref|YP_001546000.1| GTP-binding protein Era [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892792|gb|ABX05872.1| GTP-binding protein Era [Herpetosiphon aurantiacus ATCC 23779]
          Length = 489

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 74/196 (37%), Gaps = 19/196 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NA   + V+IV+  P TTR  +   L+     +   DT GI +  
Sbjct: 200 VALVGKPNVGKSTLLNAYLGQKVSIVSPKPQTTRVPVRGILNGPDAQIIFVDTPGIHKPR 259

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
             +    +      V NAD+I  + +I            ++        I +  K D   
Sbjct: 260 HKLGNFMVDVAKRAVPNADVICFMVDITVPPNRMDREIAQMVLLSRKPHILVLNKVDATD 319

Query: 334 TYTE-----------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
              +           E +  +S+    G+E L+ +I   L    +  P    S       
Sbjct: 320 EADKHLQEYRDLAPWEMEVAVSARDKLGMETLLAEIVQRLPVGHRLYPEDQLSDVSERSL 379

Query: 383 LSQTVRYLEMASLNEK 398
           +++ +R   M +  E+
Sbjct: 380 VAEMIREKVMLNTEEE 395


>gi|212638693|ref|YP_002315213.1| GTPase [Anoxybacillus flavithermus WK1]
 gi|212560173|gb|ACJ33228.1| GTPase [Anoxybacillus flavithermus WK1]
          Length = 306

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +      +   +   D
Sbjct: 8   EGYKSGF-VAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIFID 66

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFI 325
           T GI +    +    +K     ++  DLIL +           +  I   K        +
Sbjct: 67  TPGIHKPKHKLGDFMVKVAQSALQEVDLILFMVNAVEGFGRGDEFIIERLKQVQTPVFLV 126

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L   Y   +       IS+  G  +E L+ +IK+ L    +  P  
Sbjct: 127 INKIDEVHPDDLLPLIEQYRSLHSFAEVIPISALQGNNVETLLQQIKNYLPEGPQYYPAH 186

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +++ +R
Sbjct: 187 QVTDHPERFIIAEFIR 202


>gi|239917900|ref|YP_002957458.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665]
 gi|281413599|ref|ZP_06245341.1| GTP-binding protein EngA [Micrococcus luteus NCTC 2665]
 gi|239839107|gb|ACS30904.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665]
          Length = 512

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 95/262 (36%), Gaps = 30/262 (11%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           T+      +      +     +  D +    +     L F     V     + V + +  
Sbjct: 170 TDEAVVSMLRRKDRPVIVAANKVDDMVQEADAATLWSLGFGYPYPVSAVHGRGVADLLDA 229

Query: 199 LKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
               +         G + R G + I ++G  N GKSSL N LA  D  +V D+ GTTRD 
Sbjct: 230 ALEALPE--ESAHGGLVPRGGPRRIALVGRPNVGKSSLLNKLAGSDRVVVDDLAGTTRDP 287

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEIN---SK 311
           +   ++L G L +  DTAGIR    +          RT   ++ A++ ++L E     S+
Sbjct: 288 VDELVELGGRLWRFVDTAGIRRRQHMAHGADYYASLRTASALDRAEVAVVLLEAPQVISE 347

Query: 312 KEISFPK-----NIDFIFIGTKSD---------LYSTYTEEYDH-------LISSFTGEG 350
           +++   +         +    K D         L      +  H        IS+ TG  
Sbjct: 348 QDVRILQMVLDSGRALVIAFNKWDQVDEDRRHQLAKEIDRDLAHVAWAPRVNISAKTGWH 407

Query: 351 LEELINKIKSILSNKFKKLPFS 372
            + L+  +   L +   ++P  
Sbjct: 408 KDRLVPALDLALDSWDTRIPTG 429



 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 74/198 (37%), Gaps = 25/198 (12%)

Query: 198 FLKNDISSHISQGKLG--EIIRNGYK--IVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
            L+ D ++ +   +LG  E +       + I+G  N GKS+L N +  +  A+V D+PG 
Sbjct: 49  ELEEDDAALLDAWQLGPDEDLDAPVPPVLAIVGRPNVGKSTLVNRIIGRREAVVEDVPGV 108

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL------------------- 294
           TRD ++ D +  G    + DT G       + +   ++  L                   
Sbjct: 109 TRDRVSYDAEWNGREFTVVDTGGWEHDAKGIHRRVAEQAELAVDVADAVVFVVDATVGMT 168

Query: 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
             + A  ++ +     +  I     +D +     +    +    Y + +S+  G G+ +L
Sbjct: 169 ATDEA--VVSMLRRKDRPVIVAANKVDDMVQEADAATLWSLGFGYPYPVSAVHGRGVADL 226

Query: 355 INKIKSILSNKFKKLPFS 372
           ++     L  +       
Sbjct: 227 LDAALEALPEESAHGGLV 244


>gi|227890109|ref|ZP_04007914.1| GTP-binding protein Era [Lactobacillus johnsonii ATCC 33200]
 gi|268319372|ref|YP_003293028.1| GTP-binding protein [Lactobacillus johnsonii FI9785]
 gi|227849553|gb|EEJ59639.1| GTP-binding protein Era [Lactobacillus johnsonii ATCC 33200]
 gi|262397747|emb|CAX66761.1| GTP-binding protein [Lactobacillus johnsonii FI9785]
          Length = 303

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 21/208 (10%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              +  ++G+ + ++G  N GKS+L N L  + VAI++  P TTR+ ++     +   + 
Sbjct: 3   DEKKDFKSGF-VALIGRPNVGKSTLLNYLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIV 61

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------KEISFPKNIDFI 323
             DT GI +  + ++    K ++  ++  D++L + E            E+         
Sbjct: 62  FIDTPGIHKPKNKLDDFMDKSSYSALDEVDVVLFMVEPEPAGKGDQYIAELLKKIKKPVF 121

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K D         +  +Y    D      IS+  G  + ELI  I   L    +   
Sbjct: 122 LVINKIDKVHPDELLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAKYLPEGPQFYD 181

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               + +   + +++ +R   +   +E+
Sbjct: 182 ADQLTDRPEYFIVAELIREQVLKLTHEE 209


>gi|315652318|ref|ZP_07905310.1| GTP-binding protein [Eubacterium saburreum DSM 3986]
 gi|315485441|gb|EFU75831.1| GTP-binding protein [Eubacterium saburreum DSM 3986]
          Length = 408

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 11/157 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I G  N GKSSL NA+  +D+AIV+DI GTT D +   ++ L    V I DT G+ + 
Sbjct: 25  IAIFGCCNVGKSSLINAITSQDIAIVSDISGTTTDPVKKSMELLPFGPVVIIDTPGLDDK 84

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNID-----FIFIGTKSDLY 332
             +     ++++   +  ADLIL + + +   S  EI F   I      ++ +G KSD  
Sbjct: 85  STLGALR-VEKSLEYINQADLILFVVDASNETSPDEIEFLDKIKSNEKRYLVVGNKSDCE 143

Query: 333 STYTE-EYDHLISSFTGEGLEELINKIKSILSNKFKK 368
               + + D  +S+     +++L   +  IL+   K+
Sbjct: 144 IIKNDIKADIYVSALKSINIDKLKGMMAQILAADKKE 180


>gi|146296153|ref|YP_001179924.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409729|gb|ABP66733.1| iron-only hydrogenase maturation protein HydF [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 403

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 19/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSSL NA+  + +AIV+D+PGTT D +   +++     V + DTAG
Sbjct: 8   ERLHIAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKSMEILPLGPVVLIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK----EINSKKEIS---FPKNIDFIFIGTKS 329
           I +  ++  K  I++T   +   D+ +L+     ++  +K+++     K +  I +  K 
Sbjct: 68  IDDVGELG-KLRIEKTLEVLNKTDIAILVVSDIDDLTYEKQLAKLFDEKKVPRIGVLNKI 126

Query: 330 DLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKL 369
           D    Y E+   L           S  T +G++EL + +  ++ +  + L
Sbjct: 127 DKDPNYKEKLSFLQTSLGMPFLAVSCVTLKGIDELKSSLAKLVPDIGEDL 176


>gi|303231481|ref|ZP_07318211.1| GTP-binding protein Era [Veillonella atypica ACS-049-V-Sch6]
 gi|302513824|gb|EFL55836.1| GTP-binding protein Era [Veillonella atypica ACS-049-V-Sch6]
          Length = 299

 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 22/199 (11%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E  ++G+ + ++G  N GKS++ NAL    +AIV+D   TTR+ +      E   + 
Sbjct: 2   NKAEHFKSGF-VAVVGRPNVGKSTMINALIGDKIAIVSDKAQTTRNRIICVYTDEEKQIV 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDF 322
             DT G+ +    + +  +      ++  + +L +   N K+       I   K   +  
Sbjct: 61  FMDTPGVHKPKHKLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPV 120

Query: 323 IFIGTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             +  K D                 Y       IS+   E L EL+N +   L    +  
Sbjct: 121 FLVVNKIDTLQKEQVLEAIVSYQDAYPFAGVIPISAKNKENLSELLNVLGEHLPEGPQYF 180

Query: 370 PFSIPSHKRHLYHLSQTVR 388
           P  + + +     +S  +R
Sbjct: 181 PEDMITDQPERLIISDIIR 199


>gi|300361843|ref|ZP_07058020.1| GTP-binding protein Era [Lactobacillus gasseri JV-V03]
 gi|300354462|gb|EFJ70333.1| GTP-binding protein Era [Lactobacillus gasseri JV-V03]
          Length = 303

 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 83/208 (39%), Gaps = 21/208 (10%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              +  ++G+ + ++G  N GKS+L N L  + VAI++  P TTR+ ++     +   + 
Sbjct: 3   DEKKDYKSGF-VALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIV 61

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------KEISFPKNIDFI 323
             DT G+ +  + ++    K ++  ++  D++L + E            E+         
Sbjct: 62  FIDTPGVHKPKNKLDDFMDKSSYSALDEVDVVLFMVEPEPAGKGDQYIAELLKKIKKPVF 121

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K D         +  +Y    D      IS+  G  + ELI  I   L    +   
Sbjct: 122 LVINKIDKVHPDKLLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAKYLPEGPQFYD 181

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               + +   + +++ +R   +   +E+
Sbjct: 182 ADQLTDRPEYFIVAELIREQVLKLTHEE 209


>gi|311110602|ref|ZP_07711999.1| GTP-binding protein Era [Lactobacillus gasseri MV-22]
 gi|311065756|gb|EFQ46096.1| GTP-binding protein Era [Lactobacillus gasseri MV-22]
          Length = 302

 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 21/208 (10%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              +  ++G+ + ++G  N GKS+L N L  + VAI++  P TTR+ ++     +   + 
Sbjct: 2   DEKKDYKSGF-VALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIV 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------KEISFPKNIDFI 323
             DT GI +  + ++    K ++  ++  D++L + E            E+         
Sbjct: 61  FIDTPGIHKPKNKLDDFMDKSSYSALDEVDVVLFMVEPEPAGKGDQYIAELLKKIKKPVF 120

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K D         +  +Y    D      IS+  G  + ELI  I   L    +   
Sbjct: 121 LVINKIDKVHPDKLLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAKYLPEGPQFYD 180

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               + +   + +++ +R   +   +E+
Sbjct: 181 ADQLTDRPEYFIVAELIREQVLKLTHEE 208


>gi|116491019|ref|YP_810563.1| GTPase [Oenococcus oeni PSU-1]
 gi|290890500|ref|ZP_06553575.1| hypothetical protein AWRIB429_0965 [Oenococcus oeni AWRIB429]
 gi|116091744|gb|ABJ56898.1| GTPase [Oenococcus oeni PSU-1]
 gi|290479896|gb|EFD88545.1| hypothetical protein AWRIB429_0965 [Oenococcus oeni AWRIB429]
          Length = 305

 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 86/214 (40%), Gaps = 26/214 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+L N +  + VAI++    TTR+ +      E   V   DT 
Sbjct: 5   YKSGF-VAIIGRPNVGKSTLLNYIIGQKVAIISSKAQTTRNKIAGIYTTEEAQVVFLDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIG 326
           GI +  + +++   K +F  +  AD +  + +   K+          +   KN     + 
Sbjct: 64  GIHKPYNSLDEYMEKASFGALNEADAVWFVVDATEKRGGGDNFIIERLKKIKNTPIYLLV 123

Query: 327 TKSDLYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            K DL     + +                + IS+ +GE +  L++ +   L    +    
Sbjct: 124 NKIDLIKKKNDLFQAISSYTVDSLDWSEVYPISAKSGEQVNALVDDVIEKLHPGPQYFSK 183

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
              +     + +++ +R  ++  L E++    I 
Sbjct: 184 EQITDHPERFLVAELIRE-KILQLTEQEVPHSIA 216


>gi|12045187|ref|NP_072998.1| GTP-binding protein EngA [Mycoplasma genitalium G37]
 gi|255660444|ref|ZP_05405853.1| GTP-binding protein EngA [Mycoplasma genitalium G37]
 gi|1723150|sp|P47571|DER_MYCGE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|3844909|gb|AAC71553.1| GTP-binding protein engA [Mycoplasma genitalium G37]
 gi|166078673|gb|ABY79291.1| GTP-binding protein engA [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 448

 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           V + +    + D++ L    +  +      ++ +   +  ++G  N GKSSL N L K++
Sbjct: 145 VISAAHGIGIGDLMDLLVKQNQLLPNENNDDLAK--IRFCVIGKPNVGKSSLINQLVKQN 202

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENAD 300
             +V++  GTTRD + + L + G    + DTAGI+    I    E     +T L +  ++
Sbjct: 203 RVLVSNESGTTRDAIDVPLKVNGEKFLLIDTAGIKRKGKINMGIETASYIKTKLAIARSN 262

Query: 301 LILLLKE----INSKKE----ISFPKNIDFIFIGTKSDLY 332
           +ILL+ +    I+ + E    ++    I  I +  K DL 
Sbjct: 263 VILLMVDGSKPISEQDEVIGGLAQAALIPVIILVNKWDLV 302



 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 21/162 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G +N GKS+LFN L +K +AIV+D P TTRD +    +     +   DT G+  
Sbjct: 2   FTVAIIGRTNVGKSTLFNRLIQKPMAIVSDTPNTTRDRIFGIGEWLKRKIAFIDTGGLIA 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSD 330
               +++    +    +  A  I+ L  +  +         K +   K+   I +  K++
Sbjct: 62  KQTPLQQLIALQVQAALSQAKAIIFLVSLQEQLNSDDFYVAKVLKKNKDKPVILVVNKAE 121

Query: 331 LYSTYTEE------------YDHLISSFTGEGLEELINKIKS 360
            ++  T E               +IS+  G G+ +L++ +  
Sbjct: 122 NFNPKTAEETLKDYYSLGFGRPVVISAAHGIGIGDLMDLLVK 163


>gi|323466383|gb|ADX70070.1| GTP-binding protein era-like protein [Lactobacillus helveticus H10]
          Length = 301

 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 86/208 (41%), Gaps = 22/208 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ + ++G  N GKS+L N L  + VAI ++ P TTR+ ++     +   V   D
Sbjct: 4   KEFKSGF-VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKMQVVFVD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIG 326
           T GI +    ++    K +   + + DL+L + E             +     +    + 
Sbjct: 63  TPGIFKPHSKLDDYMDKASLSSLNDVDLVLFMVESEEIGKGDQYIANLLKEVKVPVFLVI 122

Query: 327 TKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         +  +Y +    +    IS+  G G+E+L+N I   L    +      
Sbjct: 123 NKVDQIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLNTINKYLPEGPQYYGADQ 182

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            + +   + +++ +R  ++  L  ++  
Sbjct: 183 ITDRPEYFVVAELIRE-QILRLISQEVP 209


>gi|320106113|ref|YP_004181703.1| GTP-binding protein Era [Terriglobus saanensis SP1PR4]
 gi|319924634|gb|ADV81709.1| GTP-binding protein Era [Terriglobus saanensis SP1PR4]
          Length = 349

 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 52/224 (23%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL----------- 264
           +R+G+ + I+G  NAGKS+L NAL  + +AIVT  P TTR+ +   L+L           
Sbjct: 3   LRSGF-VSIVGRPNAGKSTLLNALLGEKIAIVTHKPQTTRNRILGVLELPIRKKAAKDPG 61

Query: 265 -EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------- 312
                V + DT G+ +    ++K  ++  +  +E+ D++L + +   +            
Sbjct: 62  RGAAQVVLVDTPGVHKPSSHLDKRMMQEVYDALESRDVVLFIVDATHRLPAESKSDKPFT 121

Query: 313 -------------EISFPKNID--FIFIGTKSD---------LYSTYTEEYDH----LIS 344
                         +S  KN+D   + +  K D         L + ++E+Y+      IS
Sbjct: 122 RDRKAMSAEEDTFALSLLKNVDSPVLLVLNKIDSVPRAELLPLIAHWSEKYNFAEVIPIS 181

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           +   +GLE L++ +   L    +  P    + +   +  ++ +R
Sbjct: 182 AKKKDGLEVLLDAVVKRLPEGQRYFPKDQLTDQPERFLAAELIR 225


>gi|315452739|ref|YP_004073009.1| GTP-binding protein engA [Helicobacter felis ATCC 49179]
 gi|315131791|emb|CBY82419.1| GTP-binding protein engA [Helicobacter felis ATCC 49179]
          Length = 435

 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 91/205 (44%), Gaps = 28/205 (13%)

Query: 196 ILFLKNDISSH-ISQGKLGEI--IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              ++  I+   + +    EI  + +  ++ I+G  N GKSSL NAL +++ A+V+++ G
Sbjct: 150 QALIQATITQLNLQESPTQEISPLVSAIQVGIIGRVNVGKSSLLNALVQQERALVSEVAG 209

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIV--EKEGIKRTFLEVENADLILLLKEIN- 309
           TT D +   +   G  +   DTAG+R+   I   EK  + RT   +E + + +L+ +++ 
Sbjct: 210 TTIDPVDQHISHHGQEICFVDTAGLRQRSKIQGLEKYALDRTTKVLEQSQIAILVLDVSV 269

Query: 310 -----SKKEISFPKNIDFIFIG--TKSDL----YSTYTEEYDHLI-----------SSFT 347
                 +K  +         +    K D+    +    E + H             S+  
Sbjct: 270 PFVDLDEKIAALVDKHRLGVVVVFNKWDIRHANFEAIMESFKHKFKFLHYAPTITASALD 329

Query: 348 GEGLEELINKIKSILSNKFKKLPFS 372
              +E++ +KI  + ++  K++  S
Sbjct: 330 KRHVEKIKDKILEVYAHFCKRISTS 354



 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 24/156 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKSSLFN L K   AI +   GTTRD+    + L G  V++ DT G+    
Sbjct: 4   IALVGRPNVGKSSLFNCLVKSRQAITSAFAGTTRDIRQGVVSLGGVFVQLLDTGGLDPGH 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN-----------IDFIFIGTKSD 330
            +   +  K +   ++  DL+  + +    K+I   ++            +   I  K D
Sbjct: 64  ALG-TQITKHSLETIQKCDLVFYVVD---GKQIPLDEDKNYFYRICQKVRNCFLIVNKID 119

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINK 357
                 E Y            +S+    GL+ LI  
Sbjct: 120 NDQEAREAYSFSSFGAKAMFFVSASHNRGLQALIQA 155


>gi|42519246|ref|NP_965176.1| GTP-binding protein Era [Lactobacillus johnsonii NCC 533]
 gi|41583534|gb|AAS09142.1| GTP-binding protein era-like protein [Lactobacillus johnsonii NCC
           533]
 gi|329667244|gb|AEB93192.1| GTP-binding protein era protein [Lactobacillus johnsonii DPC 6026]
          Length = 303

 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 21/208 (10%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              +  ++G+ + ++G  N GKS+L N L  + VAI++  P TTR+ ++     +   + 
Sbjct: 3   DEKKDFKSGF-VALIGRPNVGKSTLLNYLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIV 61

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------KEISFPKNIDFI 323
             DT GI +  + ++    K ++  ++  D++L + E            E+         
Sbjct: 62  FIDTPGIHKPKNKLDDFMDKSSYSALDEVDVVLFMVEPEPAGKGDQYIAELLKKIKKPVF 121

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K D         +  +Y    D      IS+  G  + ELI  I   L    +   
Sbjct: 122 LVINKIDKVHPDELLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAKYLPEGPQFYD 181

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               + +   + +++ +R   +   +E+
Sbjct: 182 ADQLTDRPEYFIVAELIREQVLKLTHEE 209


>gi|119385154|ref|YP_916210.1| GTP-binding protein EngA [Paracoccus denitrificans PD1222]
 gi|166225834|sp|A1B4S0|DER_PARDP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|119374921|gb|ABL70514.1| small GTP-binding protein [Paracoccus denitrificans PD1222]
          Length = 489

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 18/157 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + D+AG+  
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAGRLGDLRFIVVDSAGLEI 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             DD ++    + T   V+ AD+ L + +             +I   +    I    K++
Sbjct: 63  AEDDSLQGRMRRLTERAVDEADVCLFVIDARVGVTAADEYFADILRRRARHVILAANKAE 122

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKI 358
             +      +           IS+  GEG+++L   +
Sbjct: 123 GRAGEAGAMEAYALGLGEPLRISAEHGEGMDDLYRAL 159



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 29/182 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I ++G  NAGKS+L N +  +D  +     G TRD +++  +  G  V+I DTAG+R+
Sbjct: 199 LQIAVIGRPNAGKSTLINKILGEDRLLTGPEAGITRDSISVSTNFMGTPVRIFDTAGMRK 258

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF--------IFIGTK 328
                D VEK  +      V  A+++++L ++    E    +  DF        +    K
Sbjct: 259 KARVTDKVEKLSVADGLRAVRFAEVVVVLLDVGIPFEQQDLRIADFAETEGRAVVVAANK 318

Query: 329 SDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL     E+                      +S+ TG+GL+ L N I        +++P
Sbjct: 319 WDLEEDKPEKLKELREAFERLLPQLKGAPLVTVSARTGKGLDRLHNAILKAHEVWNRRIP 378

Query: 371 FS 372
            +
Sbjct: 379 TA 380


>gi|194467792|ref|ZP_03073778.1| GTP-binding protein Era [Lactobacillus reuteri 100-23]
 gi|194452645|gb|EDX41543.1| GTP-binding protein Era [Lactobacillus reuteri 100-23]
          Length = 301

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+L N +  + VAI++++  TTR+ +          +   DT 
Sbjct: 6   YKSGF-VAIIGRPNVGKSTLLNYVVGQKVAIMSNVAQTTRNKIQGIYTSPEAQIIFIDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGT 327
           GI +    +     K     ++  D +L +     K+       I   K  N     +  
Sbjct: 65  GIHKPSTKLGDFMEKSAMSALDEVDAVLFVVSATEKRGPGDDFIIERLKKVNQPIFLVVN 124

Query: 328 KSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D         +   Y +         IS+  G  +  LIN I  IL N  +  P    
Sbjct: 125 KIDQINPNDLPEIVDQYKDTLPFKGVVPISALQGNNVNNLINDIIKILPNGPQYYPADQV 184

Query: 375 SHKRHLYHLSQTVR 388
           S     + +++ +R
Sbjct: 185 SDHPERFVIAEMIR 198


>gi|303228934|ref|ZP_07315744.1| GTP-binding protein Era [Veillonella atypica ACS-134-V-Col7a]
 gi|302516348|gb|EFL58280.1| GTP-binding protein Era [Veillonella atypica ACS-134-V-Col7a]
          Length = 299

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 22/199 (11%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E  ++G+ + ++G  N GKS++ NAL    +AIV+D   TTR+ +      E   + 
Sbjct: 2   NKAEHFKSGF-VAVVGRPNVGKSTMINALIGDKIAIVSDKAQTTRNRIICVYTDEEKQIV 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDF 322
             DT G+ +    + +  +      ++  + +L +   N K+       I   K   +  
Sbjct: 61  FMDTPGVHKPKHKLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPV 120

Query: 323 IFIGTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             +  K D                 Y       IS+   E L EL+N +   L    +  
Sbjct: 121 FLVVNKIDTLQKEQVLEAIVSYQDAYPFAGVIPISAKNKENLSELLNVLGEHLPEGPQYF 180

Query: 370 PFSIPSHKRHLYHLSQTVR 388
           P  + + +     +S  VR
Sbjct: 181 PEDMITDQPERLIISDIVR 199


>gi|298252771|ref|ZP_06976565.1| GTPase [Gardnerella vaginalis 5-1]
 gi|297533135|gb|EFH72019.1| GTPase [Gardnerella vaginalis 5-1]
          Length = 734

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA ++ ++V D+ GTTRD +   + ++G      DTAGI+  
Sbjct: 474 RVALVGRPNVGKSSLLNHLAHEERSVVNDLAGTTRDPVDEVVRVDGEDWLFIDTAGIKRR 533

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTKS 329
                  E     RT   +E ++L L+L + +   +++++     +       + +  K 
Sbjct: 534 QHKLTGAEYYSSLRTQAAIERSELALILFDSSQPIAEQDLKVMSQAVDAGRAIVLVFNKW 593

Query: 330 DLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL   ++ +                    +S+ TG     L   +++ L +  K++P  
Sbjct: 594 DLMDEFSRQRMERLWKTEFERVTWAERVNLSAKTGWHTNRLARAMRTALDSWDKRIPTG 652



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 17/181 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +    VA+V D PG TRD ++ D +  G   K+ DT G     
Sbjct: 300 IAIIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFKLVDTGGWEADV 359

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSD--L 331
           + ++    ++  + V  +D ++ L +         ++ +S  +           K D   
Sbjct: 360 EGIDSSIAQQAQVAVRLSDAVIFLVDGQVGLTATDERIVSMLRAAGKPITLAVNKVDDAR 419

Query: 332 YSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
               T E+        + IS+  G G+ +L++   + L    K   F  P   R +  + 
Sbjct: 420 SEYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALNSLKKANKTSGFLTPEGLRRVALVG 479

Query: 385 Q 385
           +
Sbjct: 480 R 480


>gi|189182921|ref|YP_001936706.1| GTP-binding protein Era [Orientia tsutsugamushi str. Ikeda]
 gi|189179692|dbj|BAG39472.1| GTP-binding protein Era [Orientia tsutsugamushi str. Ikeda]
          Length = 306

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 20/199 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ILG  N+GKS+L N L  + ++IVT    TTR  +T  +      +   DT GI +
Sbjct: 15  MVVSILGMPNSGKSTLLNRLIGQKISIVTPKVQTTRSAITGIVTYNLTQLIFIDTPGIFQ 74

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--KEISFP------KNIDFIFIGTKS-- 329
               +EK  ++  +  +  AD+ LL+ +I  K  ++I         + I F  I  K   
Sbjct: 75  PKKTLEKAMVRCAWTSIVGADIALLIIDITKKLNEQIQIILTRLISQKIKFCIILNKIDI 134

Query: 330 ----------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                     DL           IS+  G G++EL+  I +I   +         +    
Sbjct: 135 CVNNLTQLMNDLKQLSINAKIIAISALNGNGVQELLQYISTIAPIRPWLYDEDDITTASM 194

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +   +  R     +L+++
Sbjct: 195 KFLAQEITREQLFLALHQE 213


>gi|150020700|ref|YP_001306054.1| GTP-binding protein Era [Thermosipho melanesiensis BI429]
 gi|189037682|sp|A6LL68|ERA_THEM4 RecName: Full=GTPase Era
 gi|149793221|gb|ABR30669.1| GTP-binding protein Era [Thermosipho melanesiensis BI429]
          Length = 299

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/215 (24%), Positives = 90/215 (41%), Gaps = 27/215 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G  N GKSSL NA+  + V IV+D P TTR+ + +      + V   DT GI +  
Sbjct: 6   VALAGKPNVGKSSLVNAIVGRKVLIVSDKPQTTRNRINVIHTTNDFQVIFVDTPGIHKPL 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----------NIDFIFIGTKSDL 331
             + +  +K     ++  DLIL +  I++K+ I  P+          N   I +  K DL
Sbjct: 66  YRLGEYMVKAAVSALKGVDLILTV--IDAKEGIGKPEAFVFDYVNQSNTKTIGVINKIDL 123

Query: 332 YSTYTEEY--------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
             T   E                   S+   EG +EL++ I   L    +  P  + + +
Sbjct: 124 VGTEKVETLQKIMEEKLTNCISIVKTSATRNEGTKELLDLIIENLPEGPQYYPEDMVTDR 183

Query: 378 RHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRL 411
              + +S+ VR  +   +  E    + +I E ++ 
Sbjct: 184 PLSFMVSEIVREKIFHFTYEEIPHSVAVIVEEIKE 218


>gi|308180766|ref|YP_003924894.1| GTP-binding protein Era [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308046257|gb|ADN98800.1| GTP-binding protein Era [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 302

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + VAI++D   TTR+ +          +   DT GI +  
Sbjct: 12  VAIIGRPNVGKSTLLNRVVGQKVAIMSDKAQTTRNRIQGIYTTADTQMVFIDTPGIHKPH 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSD--- 330
             +    +K     +   D +L +   + ++       I   K        +  K D   
Sbjct: 72  SRLGDFMVKSALSTLGEVDAVLFMINADERRGAGDNFIIDRLKTVKQPIYLVINKIDQVH 131

Query: 331 ------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y +       + IS+  G  ++EL+  +K  L    +  P    +     
Sbjct: 132 PNHLLEIMDQYKDALPWKEVYPISALEGNNVDELLTTLKGQLPEGPQYYPSDQITDHPER 191

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 192 FIISELIR 199


>gi|294501286|ref|YP_003564986.1| GTP-binding protein Era [Bacillus megaterium QM B1551]
 gi|295706633|ref|YP_003599708.1| GTP-binding protein Era [Bacillus megaterium DSM 319]
 gi|294351223|gb|ADE71552.1| GTP-binding protein Era [Bacillus megaterium QM B1551]
 gi|294804292|gb|ADF41358.1| GTP-binding protein Era [Bacillus megaterium DSM 319]
          Length = 301

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +  + +AI++D P TTR+ +      +   +   DT GI +  
Sbjct: 11  VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTEDQAQIVFIDTPGIHKPK 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSD--- 330
             +    +K     ++  DLIL +           +  I   K+       +  K D   
Sbjct: 71  HKLGDFMMKVAQNTLKEVDLILFMINATEGLGRGDEFIIERLKDTKTPVFLVINKIDEIH 130

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 + + Y + Y       IS+  G  +E L+++IK  L    +  P    +     
Sbjct: 131 PDELFSIITNYKDLYPFAEIVPISALQGNNVERLLDQIKQRLPEGPQYYPADQVTDHPER 190

Query: 381 YHLSQTVR 388
           + +++ +R
Sbjct: 191 FIITELIR 198


>gi|254302672|ref|ZP_04970030.1| GTP-binding protein [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322864|gb|EDK88114.1| GTP-binding protein [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 296

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
            ++ +         +++ D+IL L + +             I+       I +  K DL 
Sbjct: 66  HLLGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENSKKPRILLVNKVDLI 125

Query: 333 STYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           S   +              +     S     G+ +L+  +   L +  K  P  + +   
Sbjct: 126 SDEQKEEKLKEIEEKLGKFDKIIFASGMYSFGISQLLEALDPYLEDGVKYYPDDMYTDMS 185

Query: 379 HLYHLSQTVR 388
               +++ VR
Sbjct: 186 TYRIITEIVR 195


>gi|227544911|ref|ZP_03974960.1| GTP-binding protein Era [Lactobacillus reuteri CF48-3A]
 gi|300910062|ref|ZP_07127522.1| GTP-binding protein Era [Lactobacillus reuteri SD2112]
 gi|227185123|gb|EEI65194.1| GTP-binding protein Era [Lactobacillus reuteri CF48-3A]
 gi|300892710|gb|EFK86070.1| GTP-binding protein Era [Lactobacillus reuteri SD2112]
          Length = 301

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+L N +  + VAI++++  TTR+ +          +   DT 
Sbjct: 6   YKSGF-VAIIGRPNVGKSTLLNYVVGQKVAIMSNVAQTTRNKIQGIYTSPEAQIIFIDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGT 327
           GI +    +     K     ++  D +L +     K+       I   K  N     +  
Sbjct: 65  GIHKPSTKLGDFMEKSAMSALDEVDAVLFVVSATEKRGPGDDFIIERLKKVNQPIFLVVN 124

Query: 328 KSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D         +   Y +         IS+  G  +  LIN I  IL N  +  P    
Sbjct: 125 KIDQINPNDLPEIVDQYKDTLPFKGIVPISALQGNNVNNLINDIIKILPNGPQYYPADQV 184

Query: 375 SHKRHLYHLSQTVR 388
           S     + +++ +R
Sbjct: 185 SDHPERFVIAEMIR 198


>gi|260583651|ref|ZP_05851399.1| GTP-binding protein Era [Granulicatella elegans ATCC 700633]
 gi|260158277|gb|EEW93345.1| GTP-binding protein Era [Granulicatella elegans ATCC 700633]
          Length = 302

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 77/198 (38%), Gaps = 22/198 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + +  ++G+ + I+G  N GKS+  N +  + +AI++D   TTR+ +      +   +  
Sbjct: 1   MSKQFKSGF-VAIVGRPNVGKSTFMNYVLGQKIAIMSDKAQTTRNKIQGVYTNQDCQIVF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNI--DFI 323
            DT GI +    +    ++  +  ++  D +L +     K+       I   K I     
Sbjct: 60  LDTPGIHKPKHELGNFMVESAYSALKEVDAVLFMVNAAEKRGPGDDFIIEKLKKIKTPVF 119

Query: 324 FIGTKSDLYS-------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K DL S             T        IS   G  ++EL+  + + L    +  P
Sbjct: 120 LVLNKIDLISPDELLDRVESYQETIPFAGIIPISVLQGNNVQELMTTLTNHLPEGPQYYP 179

Query: 371 FSIPSHKRHLYHLSQTVR 388
               +     + +S+ +R
Sbjct: 180 SDQITDHPEYFVVSELIR 197


>gi|302386768|ref|YP_003822590.1| small GTP-binding protein [Clostridium saccharolyticum WM1]
 gi|302197396|gb|ADL04967.1| small GTP-binding protein [Clostridium saccharolyticum WM1]
          Length = 398

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 14/172 (8%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LE 265
           +++    E +  G+     G  NAGKSS+ NA+  +++++V+++ GTT D +   ++ L 
Sbjct: 3   LNETPSSERVHIGF----FGRRNAGKSSVVNAVTGQELSVVSEVKGTTTDPVYKSMELLP 58

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFP 317
              V I DT G  +   + E   +++T   +  +D  +L+ +  + K         +   
Sbjct: 59  MGPVVIIDTPGFDDEGALGEMR-VRKTKQILNRSDCAVLVVDGAAGKTKTDEELIHLFQE 117

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           K I ++    K DL    T E    +S+  G  ++EL  +I  +++    K+
Sbjct: 118 KKIPYVVAYNKCDLTGEQTYEDGLSVSASEGLFIQELKERIGGLVNTGDTKM 169


>gi|311087490|gb|ADP67570.1| GTP-binding protein EngA [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 453

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 87/203 (42%), Gaps = 29/203 (14%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
              K  I+ ++   K  E+ +   K+  +G  N GKS+L N + K++  I ++ PGTT D
Sbjct: 166 EKFKKKITENL--YKDTELKKIAIKVAFIGRPNVGKSTLINGILKEERMITSNTPGTTLD 223

Query: 257 VLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEIN---S 310
            ++  +        + DTAG  +     +  ++  I +T   +E +++ILL+ + +    
Sbjct: 224 SISTPIKYNYENYTLIDTAGASKKKKKINDFQRFSIIKTLQTIEKSNVILLIIDASLQTC 283

Query: 311 KKEISFPK-----NIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGE 349
            +++S            + +  K DL+++   +                  H IS+   +
Sbjct: 284 HQDLSLADFIIHSGKGIVVVVNKCDLFNSVELKKIKELIKSKLKFLYFSKIHFISALYKK 343

Query: 350 GLEELINKIKSILSNKFKKLPFS 372
           G+ +L   IK    +  +K+  S
Sbjct: 344 GIFQLFTSIKESYEDSKRKISTS 366



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 18/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           IV++G +N GKS+LFN L K   A+V + PG TRD       L+    + + DTAG+   
Sbjct: 5   IVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKIILIDTAGLDIK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNI-----DFIFIGTKSDLY 332
            + +EK+   +T + ++ A LIL L         +E    KNI       I +  K D  
Sbjct: 65  LNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVINKIDGI 124

Query: 333 STYTE---------EYDHLISSFTGEGLEELINK 357
           +  ++         E    IS+   +G+  LIN+
Sbjct: 125 NEASKINEFYSLGFEKIQKISASHNQGINTLINR 158


>gi|227904119|ref|ZP_04021924.1| GTP-binding protein Era [Lactobacillus acidophilus ATCC 4796]
 gi|227868138|gb|EEJ75559.1| GTP-binding protein Era [Lactobacillus acidophilus ATCC 4796]
          Length = 308

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 82/195 (42%), Gaps = 21/195 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ + ++G  N GKS+L N L  + VAI ++ P TTR+ ++     +   V   D
Sbjct: 11  KEFKSGF-VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDRMQVIFVD 69

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIG 326
           T GI +    ++    K +   + + DL+L + E            ++     +    + 
Sbjct: 70  TPGIFKPHSKLDDYMDKASLSSLNDVDLVLFMVEPEDMGKGDQYIADLLKEVKVPVFLVI 129

Query: 327 TKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         +  +Y +    +    IS+  G G+++L+N I   L    +      
Sbjct: 130 NKVDQIHPNKLLPIMDSYHKLDGFKEILPISATQGIGIDDLLNTIYKYLPAGPQYYDADQ 189

Query: 374 PSHKRHLYHLSQTVR 388
            + +   + +++ +R
Sbjct: 190 ITDRPEYFVVAELIR 204


>gi|209528109|ref|ZP_03276585.1| GTP-binding protein Era [Arthrospira maxima CS-328]
 gi|209491468|gb|EDZ91847.1| GTP-binding protein Era [Arthrospira maxima CS-328]
          Length = 310

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 23/215 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+L N L  + +AI + I  TTR+ L   L  E   +   DT 
Sbjct: 16  YKSGF-VGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTESAQIIFVDTP 74

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFI--GT 327
           GI +    + K  +K   L + + D+++ + + +       +  +    +     I    
Sbjct: 75  GIHKPHHQLGKVLVKNAKLAIASVDVLVFVVDSSVMSGGGDRYIVDLLTHTKVPVILGLN 134

Query: 328 KSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL     E  D                 S+ TG GLE L N + + L       P  +
Sbjct: 135 KWDLQPDQYEAIDQSYQQFAEANQWQMVKFSASTGAGLETLQNLLINSLDPGPYYYPPDL 194

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            + +   + + + +R   +    E+      IA +
Sbjct: 195 VTDQPERFIMGELIREQILLHTREEVPHSVAIAID 229


>gi|148284268|ref|YP_001248358.1| GTP-binding protein Era [Orientia tsutsugamushi str. Boryong]
 gi|146739707|emb|CAM79520.1| GTP-binding protein [Orientia tsutsugamushi str. Boryong]
          Length = 306

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 20/199 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ILG  N+GKS+L N L  + ++IVT    TTR  +T  +      +   DT GI +
Sbjct: 15  MVVSILGMPNSGKSTLLNRLIGQKISIVTPKVQTTRSAITGIVTYNLTQLIFIDTPGIFQ 74

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--KEISFP------KNIDFIFIGTKS-- 329
               +EK  ++  +  +  AD+ LL+ +I  K  ++I         + I F  I  K   
Sbjct: 75  PKKTLEKAMVRCAWTSIVGADIALLIIDITKKLNEQIQIILTRLISQKIKFCIILNKIDI 134

Query: 330 ----------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                     DL           IS+  G G++EL+  I +I   +         +    
Sbjct: 135 GLNNLTQLMNDLKQLSINAKIIAISALNGNGVQELLQYISTIAPIRPWLYDEDDITTASM 194

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +   +  R     +L+++
Sbjct: 195 KFLAQEITREQLFLALHQE 213


>gi|118586863|ref|ZP_01544297.1| GTP-binding protein Era [Oenococcus oeni ATCC BAA-1163]
 gi|118432695|gb|EAV39427.1| GTP-binding protein Era [Oenococcus oeni ATCC BAA-1163]
          Length = 309

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 86/214 (40%), Gaps = 26/214 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+L N +  + VAI++    TTR+ +      E   V   DT 
Sbjct: 9   YKSGF-VAIIGRPNVGKSTLLNYIIGQKVAIISSKAQTTRNKIAGIYTTEEAQVVFLDTP 67

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIG 326
           GI +  + +++   K +F  +  AD +  + +   K+          +   KN     + 
Sbjct: 68  GIHKPYNSLDEYMEKASFGALNEADAVWFVVDATEKRGGGDNFIIERLKKIKNTPIYLLV 127

Query: 327 TKSDLYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            K DL     + +                + IS+ +GE +  L++ +   L    +    
Sbjct: 128 NKIDLIKKKNDLFQAISSYTVDSLDWSEVYPISAKSGEQVNALVDDVIEKLHPGPQYFSK 187

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
              +     + +++ +R  ++  L E++    I 
Sbjct: 188 EQITDHPERFLVAELIRE-KILQLTEQEVPHSIA 220


>gi|297243478|ref|ZP_06927410.1| GTPase [Gardnerella vaginalis AMD]
 gi|296888523|gb|EFH27263.1| GTPase [Gardnerella vaginalis AMD]
          Length = 734

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA ++ ++V D+ GTTRD +   + ++G      DTAGI+  
Sbjct: 474 RVALVGRPNVGKSSLLNHLAHEERSVVNDLAGTTRDPVDEVVRVDGEDWLFIDTAGIKRR 533

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTKS 329
                  E     RT   +E ++L L+L + +   +++++     +       + +  K 
Sbjct: 534 QHKLTGAEYYSSLRTQAAIERSELALILFDSSQPIAEQDLKVMSQAVDAGRAIVLVFNKW 593

Query: 330 DLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL   ++ +                    +S+ TG     L   +++ L +  K++P  
Sbjct: 594 DLMDEFSRQRMERLWKTEFERVTWAERVNLSAKTGWHTNRLARAMRTALDSWDKRIPTG 652



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 25/243 (10%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK---NDISSHISQGKLGEIIRNG 219
             L  +   ++A ++  E +          L+D        +++S      K  + +  G
Sbjct: 243 QTLDALVEMVDAAIEQDEYDRYAANLEGYDLDDEDRALLRGDEVSQ--DDAKDSKAV--G 298

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS+L N +    VA+V D PG TRD ++ D +  G   K+ DT G   
Sbjct: 299 V-IAIIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFKLVDTGGWEA 357

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSD- 330
             + ++    ++  + V  +D ++ L +         ++ +S  +           K D 
Sbjct: 358 DVEGIDSSIAQQAQVAVRLSDAVIFLVDGQVGLTATDERIVSMLRAAGKPITLAVNKVDD 417

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                 T E+        + IS+  G G+ +L++   + L    K   F  P   R +  
Sbjct: 418 ARSEYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALNSLKKANKTSGFLTPEGLRRVAL 477

Query: 383 LSQ 385
           + +
Sbjct: 478 VGR 480


>gi|28378610|ref|NP_785502.1| GTP-binding protein Era [Lactobacillus plantarum WCFS1]
 gi|254556825|ref|YP_003063242.1| GTP-binding protein Era [Lactobacillus plantarum JDM1]
 gi|300768138|ref|ZP_07078043.1| GTP-binding protein Era [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|38257324|sp|Q88VS0|ERA_LACPL RecName: Full=GTPase Era
 gi|28271446|emb|CAD64351.1| GTP-binding protein [Lactobacillus plantarum WCFS1]
 gi|254045752|gb|ACT62545.1| GTP-binding protein Era [Lactobacillus plantarum JDM1]
 gi|300494202|gb|EFK29365.1| GTP-binding protein Era [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 302

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + VAI++D   TTR+ +          +   DT GI +  
Sbjct: 12  VAIIGRPNVGKSTLLNRVVGQKVAIMSDKAQTTRNRIQGIYTTADTQMVFIDTPGIHKPH 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSD--- 330
             +    +K     +   D +L +   + ++       I   K        +  K D   
Sbjct: 72  SRLGDFMVKSALSTLGEVDAVLFMINADERRGAGDNFIIDRLKTVKQPIYLVINKIDQVH 131

Query: 331 ------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y +       + IS+  G  ++EL+  +K  L    +  P    +     
Sbjct: 132 PDHLLEIMDQYKDALPWKEVYPISALEGNNVDELLTTLKGQLPEGPQYYPSDQITDHPER 191

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 192 FIISELIR 199


>gi|58337483|ref|YP_194068.1| GTP-binding protein Era [Lactobacillus acidophilus NCFM]
 gi|81311455|sp|Q5FJT7|ERA_LACAC RecName: Full=GTPase Era
 gi|58254800|gb|AAV43037.1| GTP-binding protein [Lactobacillus acidophilus NCFM]
          Length = 301

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 82/195 (42%), Gaps = 21/195 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ + ++G  N GKS+L N L  + VAI ++ P TTR+ ++     +   V   D
Sbjct: 4   KEFKSGF-VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDRMQVIFVD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIG 326
           T GI +    ++    K +   + + DL+L + E            ++     +    + 
Sbjct: 63  TPGIFKPHSKLDDYMDKASLSSLNDVDLVLFMVEPEDMGKGDQYIADLLKEVKVPVFLVI 122

Query: 327 TKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         +  +Y +    +    IS+  G G+++L+N I   L    +      
Sbjct: 123 NKVDQIHPNKLLPIMDSYHKLDGFKEILPISATQGIGIDDLLNTIYKYLPAGPQYYDADQ 182

Query: 374 PSHKRHLYHLSQTVR 388
            + +   + +++ +R
Sbjct: 183 ITDRPEYFVVAELIR 197


>gi|148543969|ref|YP_001271339.1| GTP-binding protein Era [Lactobacillus reuteri DSM 20016]
 gi|184153364|ref|YP_001841705.1| GTP-binding protein [Lactobacillus reuteri JCM 1112]
 gi|227364882|ref|ZP_03848928.1| GTP-binding protein Era [Lactobacillus reuteri MM2-3]
 gi|325682493|ref|ZP_08162010.1| GTP-binding protein Era [Lactobacillus reuteri MM4-1A]
 gi|148531003|gb|ABQ83002.1| GTP-binding protein Era [Lactobacillus reuteri DSM 20016]
 gi|183224708|dbj|BAG25225.1| GTP-binding protein [Lactobacillus reuteri JCM 1112]
 gi|227070086|gb|EEI08463.1| GTP-binding protein Era [Lactobacillus reuteri MM2-3]
 gi|324978332|gb|EGC15282.1| GTP-binding protein Era [Lactobacillus reuteri MM4-1A]
          Length = 301

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+L N +  + VAI++++  TTR+ +          +   DT 
Sbjct: 6   YKSGF-VAIIGRPNVGKSTLLNYVVGQKVAIMSNVAQTTRNKIQGIYTSPEAQIIFIDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGT 327
           GI +    +     K     ++  D +L +     K+       I   K  N     +  
Sbjct: 65  GIHKPSTKLGDFMEKSAMSALDEVDAVLFVVSATEKRGPGDDFIIERLKKVNQPIFLVVN 124

Query: 328 KSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D         +   Y +         IS+  G  +  LIN I  IL N  +  P    
Sbjct: 125 KIDQINPNDLPEIVDQYKDTLPFKGIVPISALQGNNVNNLINDIIKILPNGPQYYPADQV 184

Query: 375 SHKRHLYHLSQTVR 388
           S     + +++ +R
Sbjct: 185 SDHPERFVIAEMIR 198


>gi|315038512|ref|YP_004032080.1| GTP-binding protein Era [Lactobacillus amylovorus GRL 1112]
 gi|312276645|gb|ADQ59285.1| GTP-binding protein Era [Lactobacillus amylovorus GRL 1112]
          Length = 301

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 81/195 (41%), Gaps = 21/195 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ + ++G  N GKS+L N L  + VAI ++ P TTR+ ++     +   +   D
Sbjct: 4   KKFKSGF-VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDDMQIVFVD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIG 326
           T GI +    ++    K +   + + DL+L + E            ++     +    + 
Sbjct: 63  TPGIFKPHSKLDDYMDKASLSSLNDVDLVLFMVEPEKIGKGDQYIADLLKEVKVPVFLVI 122

Query: 327 TKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         +  +Y +    +    IS+  G G+E+L+  +   L    +      
Sbjct: 123 NKVDQIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLATLNKYLPEGPQYYSADQ 182

Query: 374 PSHKRHLYHLSQTVR 388
            + +   + +++ +R
Sbjct: 183 ITDRPEYFVVAELIR 197


>gi|15608851|ref|NP_216229.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Rv]
 gi|15841173|ref|NP_336210.1| GTP-binding protein EngA [Mycobacterium tuberculosis CDC1551]
 gi|31792900|ref|NP_855393.1| GTP-binding protein EngA [Mycobacterium bovis AF2122/97]
 gi|121637621|ref|YP_977844.1| GTP-binding protein EngA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148661511|ref|YP_001283034.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Ra]
 gi|148822919|ref|YP_001287673.1| GTP-binding protein EngA [Mycobacterium tuberculosis F11]
 gi|167967183|ref|ZP_02549460.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Ra]
 gi|215403983|ref|ZP_03416164.1| GTP-binding protein EngA [Mycobacterium tuberculosis 02_1987]
 gi|215411361|ref|ZP_03420169.1| GTP-binding protein EngA [Mycobacterium tuberculosis 94_M4241A]
 gi|215445899|ref|ZP_03432651.1| GTP-binding protein EngA [Mycobacterium tuberculosis T85]
 gi|218753421|ref|ZP_03532217.1| GTP-binding protein EngA [Mycobacterium tuberculosis GM 1503]
 gi|224990096|ref|YP_002644783.1| GTP-binding protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799248|ref|YP_003032249.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 1435]
 gi|254231909|ref|ZP_04925236.1| GTP-binding protein engA [Mycobacterium tuberculosis C]
 gi|254364552|ref|ZP_04980598.1| GTP-binding protein engA [Mycobacterium tuberculosis str. Haarlem]
 gi|254550724|ref|ZP_05141171.1| GTP-binding protein EngA [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260186666|ref|ZP_05764140.1| GTP-binding protein EngA [Mycobacterium tuberculosis CPHL_A]
 gi|260204983|ref|ZP_05772474.1| GTP-binding protein EngA [Mycobacterium tuberculosis K85]
 gi|289447328|ref|ZP_06437072.1| GTP-binding protein engA [Mycobacterium tuberculosis CPHL_A]
 gi|289554514|ref|ZP_06443724.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 605]
 gi|289574381|ref|ZP_06454608.1| GTP-binding protein engA [Mycobacterium tuberculosis K85]
 gi|289745849|ref|ZP_06505227.1| GTP-binding protein engA [Mycobacterium tuberculosis 02_1987]
 gi|289757822|ref|ZP_06517200.1| GTP-binding protein [Mycobacterium tuberculosis T85]
 gi|289761869|ref|ZP_06521247.1| GTP-binding protein engA [Mycobacterium tuberculosis GM 1503]
 gi|294993177|ref|ZP_06798868.1| GTP-binding protein EngA [Mycobacterium tuberculosis 210]
 gi|297634266|ref|ZP_06952046.1| GTP-binding protein EngA [Mycobacterium tuberculosis KZN 4207]
 gi|297731253|ref|ZP_06960371.1| GTP-binding protein EngA [Mycobacterium tuberculosis KZN R506]
 gi|298525211|ref|ZP_07012620.1| GTP-binding protein engA [Mycobacterium tuberculosis 94_M4241A]
 gi|306775899|ref|ZP_07414236.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu001]
 gi|306779717|ref|ZP_07418054.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu002]
 gi|306788817|ref|ZP_07427139.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu004]
 gi|306793153|ref|ZP_07431455.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu005]
 gi|306797532|ref|ZP_07435834.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu006]
 gi|306803413|ref|ZP_07440081.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu008]
 gi|306967812|ref|ZP_07480473.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu009]
 gi|306972008|ref|ZP_07484669.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu010]
 gi|307084298|ref|ZP_07493411.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu012]
 gi|313658585|ref|ZP_07815465.1| GTP-binding protein Der [Mycobacterium tuberculosis KZN V2475]
 gi|54037050|sp|P64058|DER_MYCBO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|54040974|sp|P64057|DER_MYCTU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225826|sp|A1KJD0|DER_MYCBP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|166225827|sp|A5U372|DER_MYCTA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|254783160|sp|C1ANY6|DER_MYCBT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|2326756|emb|CAB10970.1| PROBABLE GTP-BINDING PROTEIN ENGA [Mycobacterium tuberculosis
           H37Rv]
 gi|13881394|gb|AAK46024.1| GTP-binding protein [Mycobacterium tuberculosis CDC1551]
 gi|31618491|emb|CAD94443.1| PROBABLE GTP-BINDING PROTEIN ENGA [Mycobacterium bovis AF2122/97]
 gi|121493268|emb|CAL71739.1| Probable GTP-binding protein engA [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124600968|gb|EAY59978.1| GTP-binding protein engA [Mycobacterium tuberculosis C]
 gi|134150066|gb|EBA42111.1| GTP-binding protein engA [Mycobacterium tuberculosis str. Haarlem]
 gi|148505663|gb|ABQ73472.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Ra]
 gi|148721446|gb|ABR06071.1| GTP-binding protein engA [Mycobacterium tuberculosis F11]
 gi|224773209|dbj|BAH26015.1| GTP-binding protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320751|gb|ACT25354.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 1435]
 gi|289420286|gb|EFD17487.1| GTP-binding protein engA [Mycobacterium tuberculosis CPHL_A]
 gi|289439146|gb|EFD21639.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 605]
 gi|289538812|gb|EFD43390.1| GTP-binding protein engA [Mycobacterium tuberculosis K85]
 gi|289686377|gb|EFD53865.1| GTP-binding protein engA [Mycobacterium tuberculosis 02_1987]
 gi|289709375|gb|EFD73391.1| GTP-binding protein engA [Mycobacterium tuberculosis GM 1503]
 gi|289713386|gb|EFD77398.1| GTP-binding protein [Mycobacterium tuberculosis T85]
 gi|298495005|gb|EFI30299.1| GTP-binding protein engA [Mycobacterium tuberculosis 94_M4241A]
 gi|308215649|gb|EFO75048.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu001]
 gi|308327367|gb|EFP16218.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu002]
 gi|308334633|gb|EFP23484.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu004]
 gi|308338420|gb|EFP27271.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu005]
 gi|308342143|gb|EFP30994.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu006]
 gi|308349930|gb|EFP38781.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu008]
 gi|308354551|gb|EFP43402.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu009]
 gi|308358528|gb|EFP47379.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu010]
 gi|308366087|gb|EFP54938.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu012]
 gi|323719804|gb|EGB28918.1| GTP-binding protein engA [Mycobacterium tuberculosis CDC1551A]
 gi|326903328|gb|EGE50261.1| GTP-binding protein engA [Mycobacterium tuberculosis W-148]
 gi|328459000|gb|AEB04423.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 4207]
          Length = 463

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD +  D    G    + DT G     
Sbjct: 29  VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 88

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
             +++   ++  + +  AD ++L+ +          +   I             K D   
Sbjct: 89  KGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSEK 148

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  L+S    E  H IS+  G G+ +L++ + + L    +    S
Sbjct: 149 GESDAAALWSLGLGE-PHAISAMHGRGVADLLDGVLAALPEVGESASAS 196



 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 85/225 (37%), Gaps = 28/225 (12%)

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAG 231
           +A   +S      +  S      +  L + + + + +         G + + ++G  N G
Sbjct: 152 DAAALWSLGLGEPHAISAMHGRGVADLLDGVLAALPEVGESASASGGPRRVALVGKPNVG 211

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KSSL N LA    ++V +  GTT D +   ++L G + +  DTAG+R         E   
Sbjct: 212 KSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRRKVGQASGHEFYA 271

Query: 289 IKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYSTYTEEY- 339
             RT   +++A++ ++L + +            +        +    K DL      E  
Sbjct: 272 SVRTHAAIDSAEVAIVLIDASQPLTEQDLRVISMVIEAGRALVLAYNKWDLVDEDRRELL 331

Query: 340 ---------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
                             IS+ TG  + +L+  ++  L++   ++
Sbjct: 332 QREIDRELVQVRWAQRVNISAKTGRAVHKLVPAMEDALASWDTRI 376


>gi|327183708|gb|AEA32155.1| GTPase Era [Lactobacillus amylovorus GRL 1118]
          Length = 301

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 81/195 (41%), Gaps = 21/195 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ + ++G  N GKS+L N L  + VAI ++ P TTR+ ++     +   +   D
Sbjct: 4   KKFKSGF-VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDDMQIVFVD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIG 326
           T GI +    ++    K +   + + DL+L + E            ++     +    + 
Sbjct: 63  TPGIFKPHSKLDDYMDKASLSSLNDVDLVLFMVEPEKIGKGDQYIADLLKEVKVPVFLVI 122

Query: 327 TKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         +  +Y +    +    IS+  G G+E+L+  +   L    +      
Sbjct: 123 NKVDQIHPNKLLPIMDSYHKLESFKEILPISATQGIGIEDLLATLNKYLPEGPQYYSADQ 182

Query: 374 PSHKRHLYHLSQTVR 388
            + +   + +++ +R
Sbjct: 183 ITDRPEYFVVAELIR 197


>gi|293192791|ref|ZP_06609686.1| ribosome-associated GTPase EngA [Actinomyces odontolyticus F0309]
 gi|292820038|gb|EFF79036.1| ribosome-associated GTPase EngA [Actinomyces odontolyticus F0309]
          Length = 517

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 38/227 (16%)

Query: 160 QWIDKLTHIRS-FIEADLDF--SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
           +  D+ T  R+  + A+LD    +EED+   + +  L D   +   +             
Sbjct: 35  ELSDEETEARARLMRANLDQFDLDEEDLALLAGESALADSDDVAAGL------------- 81

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
                + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G
Sbjct: 82  ---PVLAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYPAEWAGRDFTLVDTGG 138

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTK 328
                  +++   ++  + V+ AD ++L+ +             E+   K    I    K
Sbjct: 139 WEIDVKGLDRSVAEQAEIAVDLADAVVLVLDATVGVTASDERIVEMLRAKKKPIILAANK 198

Query: 329 SD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            D          L+S    E  H IS+  G G  +L++ +  +L  +
Sbjct: 199 VDSPLQEADAAYLWSLGLGE-PHPISALHGRGTGDLLDVVMEVLPTE 244



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL NALA  +  +V ++ GTTRD +   ++L+G      DTAGIR  
Sbjct: 258 RVALVGRPNVGKSSLLNALAGGERVVVNELAGTTRDPVDELIELDGRSWWFVDTAGIRRK 317

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKS 329
                  +     RT   +E A++ L+L + ++          +         + +  K 
Sbjct: 318 MHRTTGADYYASIRTQAAIEKAEVALVLIDGSTPLTEQDVRVVQQVIDAGRALVVVTNKW 377

Query: 330 DLYSTYTEEYDHLI----------------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL     ++                     ++ TG     ++  + + L     ++P  
Sbjct: 378 DLVDEDRQKEIKNELERELVQIQWAPRINLAAKTGWHTNRIVRALDTALEGWETRIPTG 436


>gi|260101321|ref|ZP_05751558.1| GTP-binding protein Era [Lactobacillus helveticus DSM 20075]
 gi|260084906|gb|EEW69026.1| GTP-binding protein Era [Lactobacillus helveticus DSM 20075]
 gi|328465883|gb|EGF37066.1| GTPase Era [Lactobacillus helveticus MTCC 5463]
          Length = 301

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 81/195 (41%), Gaps = 21/195 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ + +LG  N GKS+L N L  + VAI ++ P TTR+ ++     +   V   D
Sbjct: 4   KEFKSGF-VALLGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKMQVVFVD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIG 326
           T GI +    ++    K +   + + DL+L + E             +     +    + 
Sbjct: 63  TPGIFKPHSKLDDYMDKASLSSLNDVDLVLFMVEPEEIGKGDQYIANLLKEVKVPVFLVI 122

Query: 327 TKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         +  +Y +    +    IS+  G G+E+L+N I   L    +      
Sbjct: 123 NKVDQIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLNTINKYLPEGPQYYGADQ 182

Query: 374 PSHKRHLYHLSQTVR 388
            + +   + +++ +R
Sbjct: 183 ITDRPEYFVVAELIR 197


>gi|254499341|ref|ZP_05112012.1| GTP-binding protein EngA [Legionella drancourtii LLAP12]
 gi|254351446|gb|EET10310.1| GTP-binding protein EngA [Legionella drancourtii LLAP12]
          Length = 468

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 3/116 (2%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + + +            +  KI   G  N GKS+L N +  ++  +V D+PGTTRD 
Sbjct: 153 SLLDAVLAPFLSQPDEVAEDDAIKIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDS 212

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           + I    +     + DTAG+R     D+ +EK  + +T   ++ +++ L L + N 
Sbjct: 213 IAIPFVRDEQRYILIDTAGVRRKSRIDEKIEKFSVIKTLQAIKESNVCLQLLDANE 268



 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 1/131 (0%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+LFN L K   A+V D PG TRD              + DT GI   D
Sbjct: 5   IALVGRPNVGKSTLFNRLTKTQDALVADFPGLTRDRQYGQAQHNEKSYIVVDTGGIGVDD 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK-KEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             V+    K++ + +  AD++L L +  S    +      +   +  K  L    TE  D
Sbjct: 65  IAVDSLMSKQSTIALNEADIVLFLVDGRSGLTGVDEKIANNLRKLSKKVHLVVNKTEGLD 124

Query: 341 HLISSFTGEGL 351
             ++    + L
Sbjct: 125 DDVACADFQSL 135


>gi|237740467|ref|ZP_04570948.1| GTP binding protein [Fusobacterium sp. 2_1_31]
 gi|229422484|gb|EEO37531.1| GTP binding protein [Fusobacterium sp. 2_1_31]
          Length = 297

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +  + VAIV+D  GTTRD +   L+++       DT GI +  
Sbjct: 6   IAIVGRPNVGKSTLINKMVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
            ++ +         +++ D+IL L + +             I+   N   I +  K DL 
Sbjct: 66  HLLGEYMTNIAINILKDVDVILFLIDASKTIGTGDMFVMDRINENSNKPKILLVNKVDLI 125

Query: 333 STYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           S   +              +     S+    G+ +L+  +   L    K  P  + +   
Sbjct: 126 SDEQKEEKLKEIEEKLGKFDKIIFASAMYSFGIAQLLEALDPYLEEGVKYYPDDMYTDMS 185

Query: 379 HLYHLSQTVR 388
               +++ VR
Sbjct: 186 TYRIITEIVR 195


>gi|138896062|ref|YP_001126515.1| GTP-binding protein [Geobacillus thermodenitrificans NG80-2]
 gi|134267575|gb|ABO67770.1| GTP-binding protein [Geobacillus thermodenitrificans NG80-2]
          Length = 302

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 74/194 (38%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +      +   +   DT 
Sbjct: 6   YKSGF-VAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDEAQIIFIDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGT 327
           G+ +    +    +K     +   DLIL +               E     N     +  
Sbjct: 65  GVHKPKHKLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLNEVNTPVFLVIN 124

Query: 328 KSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D         +   Y + Y       IS+  G  +E L+ +IK  L    +  P    
Sbjct: 125 KIDRVHPDELLPIIDRYKDLYTFAEIVPISALEGNNVERLLEQIKQRLPEGPQYYPPDQI 184

Query: 375 SHKRHLYHLSQTVR 388
           +     + +++ +R
Sbjct: 185 TDHPEQFIIAELIR 198


>gi|108804275|ref|YP_644212.1| small GTP-binding protein domain-containing protein [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765518|gb|ABG04400.1| Small GTP-binding protein domain [Rubrobacter xylanophilus DSM
           9941]
          Length = 437

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 18/162 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G  N GKSSL N +  +  A+V + PGTTRD      +  G    + DT G
Sbjct: 5   RRLPVVAVVGAPNVGKSSLVNRILGRRRAVVAEEPGTTRDRGYARAEWAGREFLLVDTGG 64

Query: 277 IRETDDIVEKEGI-KRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGT 327
           +  +  +  +  +  +  + VE AD+I+ L +  +    +             + +    
Sbjct: 65  MEPSARMGLEALVTLQARIAVEEADVIVHLTDARTGPTEADAAIARELLRSRAEVVLAVN 124

Query: 328 KSDLYSTYTEEY---------DHLISSFTGEGLEELINKIKS 360
           K D  +  +E Y          H +S+  G G+ +L++++ +
Sbjct: 125 KLDDPADESERYRFYSLGEGEPHPVSALHGLGVGDLLDEVVA 166



 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 84/256 (32%), Gaps = 25/256 (9%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET---EMQRRLSMEGMSG-- 152
            L     +  +             +I + EA+ +  L  + T   E    ++ E +    
Sbjct: 58  LLVDTGGMEPSARMGLEALVTLQARIAVEEADVIVHLTDARTGPTEADAAIARELLRSRA 117

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212
           E+     +  D       +    L   E   V        L     L   ++        
Sbjct: 118 EVVLAVNKLDDPADESERYRFYSLGEGEPHPVSAL---HGLGVGDLLDEVVARLPEAAPP 174

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD--LEG--YL 268
                 G    I+G  N GKS+L N L  +  A+V++  GTT DV+  +++  L+G    
Sbjct: 175 EAAELPGI--AIIGRPNVGKSTLLNRLLGEQRAVVSEAAGTTTDVVESEVEVQLDGGRER 232

Query: 269 VKISDTAGIRETDDIVE---KEGIKRTFLEVENADLILLLKEINSKK---EISFPK---- 318
             + DTAG+ +     +        RT   +  + + LL+ +        ++   +    
Sbjct: 233 FALLDTAGVGKRTHRAQGVPYYSALRTAEAIRRSSVALLVVDAAEGLVAGDLQLARQVEE 292

Query: 319 -NIDFIFIGTKSDLYS 333
                  +  K DL  
Sbjct: 293 AGRSLGVLLNKRDLVP 308


>gi|302874334|ref|YP_003842967.1| GTP-binding protein Era [Clostridium cellulovorans 743B]
 gi|307689399|ref|ZP_07631845.1| GTP-binding protein Era [Clostridium cellulovorans 743B]
 gi|302577191|gb|ADL51203.1| GTP-binding protein Era [Clostridium cellulovorans 743B]
          Length = 296

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 85/209 (40%), Gaps = 24/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++IV+  P TTR+ +   L  + + +   DT G+ +  
Sbjct: 7   VAIIGRPNVGKSTLMNNLMGEKLSIVSPRPQTTRNNIQTILTKKDFQIIFVDTPGMHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPK--NIDFIFIGTKSD--- 330
             + +  +K     +++ DL++ +   +       K  +   K  N     +  K D   
Sbjct: 67  HKLGEFMMKSVSDSLKDVDLVVFMTTADGELGPGDKHILEDLKKVNSKKFLVVNKIDETK 126

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     +      +    IS+  G+  ++L+  +   L       P  + +  +  
Sbjct: 127 AETVAETLQVVGELVEFDEIIPISALNGKNTDKLLELMVDYLPEGPMYYPEDMITDAQER 186

Query: 381 YHLSQTVRYLEMASLNE---KDCGLDIIA 406
           + +S+ +R   +  L++       ++I++
Sbjct: 187 FIVSEIIREKALRLLSQEVPHGIAVEIVS 215


>gi|257061326|ref|YP_003139214.1| GTP-binding protein Era [Cyanothece sp. PCC 8802]
 gi|256591492|gb|ACV02379.1| GTP-binding protein Era [Cyanothece sp. PCC 8802]
          Length = 314

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 89/217 (41%), Gaps = 24/217 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+L N L  + +AI + +  TTR+ L   L  E   +   D
Sbjct: 18  EGFKSGF-VGIIGRPNVGKSTLMNQLVGQKIAITSPVSQTTRNRLRGILTTEEAQIIFVD 76

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFI-- 325
           T GI +    + K  ++     +   D+IL++ + + +        +   +N +   I  
Sbjct: 77  TPGIHKPHHQLGKILVQNAEAAINAVDIILVVVDSSIEAGGGDRYIVELLENTETPVILG 136

Query: 326 GTKSDLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             KSD      +  D                 S+ TGEGL+ L   + ++L       P 
Sbjct: 137 LNKSDQQPQNYQPIDESYLVLAQAHNWPVIKFSALTGEGLDNLQKTLINLLEPGPYYYPP 196

Query: 372 SIPSHKRHLYHLSQTVR-YLEMASLNEKDCGLDIIAE 407
            + + +   + + + +R  +   +  E    + I+ E
Sbjct: 197 DLVTDQPERFIMGELIREQILQQTRQEIPHSVAIVIE 233


>gi|283783291|ref|YP_003374045.1| ribosome-associated GTPase EngA [Gardnerella vaginalis 409-05]
 gi|283441128|gb|ADB13594.1| ribosome-associated GTPase EngA [Gardnerella vaginalis 409-05]
          Length = 734

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA ++ ++V D+ GTTRD +   + ++G      DTAGI+  
Sbjct: 474 RVALVGRPNVGKSSLLNHLAHEERSVVNDLAGTTRDPVDEVVRVDGEDWLFIDTAGIKRR 533

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTKS 329
                  E     RT   +E ++L L+L + +   +++++     +       + +  K 
Sbjct: 534 QHKLTGAEYYSSLRTQAAIERSELALILFDSSQPIAEQDLKVMSQAVDAGRAIVLVFNKW 593

Query: 330 DLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL   ++ +                    +S+ TG     L   +++ L +  K++P  
Sbjct: 594 DLMDEFSRQRMERLWKTEFERVTWAERVNLSAKTGWHTNRLARAMRTALDSWDKRIPTG 652



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 25/243 (10%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK---NDISSHISQGKLGEIIRNG 219
             L  +   ++A ++  E +          L+D        +++S      K  + +  G
Sbjct: 243 QTLDALVEMVDAAIEQDEYDRYAANLEGYDLDDEDRALLRGDEVSQ--DDAKDSKAV--G 298

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS+L N +    VA+V D PG TRD ++ D +  G   K+ DT G   
Sbjct: 299 V-IAIIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFKLVDTGGWEA 357

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSD- 330
             + ++    ++  + V  +D ++ L +         ++ +S  +           K D 
Sbjct: 358 DVEGIDSSIAQQAQIAVRLSDAVIFLVDGQVGLTATDERIVSMLRAAGKPITLAVNKVDD 417

Query: 331 -LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                 T E+        + IS+  G G+ +L++   + L    K   F  P   R +  
Sbjct: 418 ARSEYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALNSLKKANKTSGFLTPEGLRRVAL 477

Query: 383 LSQ 385
           + +
Sbjct: 478 VGR 480


>gi|218247339|ref|YP_002372710.1| GTP-binding protein Era [Cyanothece sp. PCC 8801]
 gi|226741204|sp|B7K414|ERA_CYAP8 RecName: Full=GTPase Era
 gi|218167817|gb|ACK66554.1| GTP-binding protein Era [Cyanothece sp. PCC 8801]
          Length = 314

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 89/217 (41%), Gaps = 24/217 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+L N L  + +AI + +  TTR+ L   L  E   +   D
Sbjct: 18  EGFKSGF-VGIIGRPNVGKSTLMNQLVGQKIAITSPVSQTTRNRLRGILTTEEAQIIFVD 76

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFI-- 325
           T GI +    + K  ++     +   D+IL++ + + +        +   +N +   I  
Sbjct: 77  TPGIHKPHHQLGKILVQNAEAAINAVDIILVVVDSSIEAGGGDRYIVELLENTETPVILG 136

Query: 326 GTKSDLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             KSD      +  D                 S+ TGEGL+ L   + ++L       P 
Sbjct: 137 LNKSDQQPQNYQPIDESYLVLAQAHNWPVIKFSALTGEGLDNLQKTLINLLEPGPYYYPP 196

Query: 372 SIPSHKRHLYHLSQTVR-YLEMASLNEKDCGLDIIAE 407
            + + +   + + + +R  +   +  E    + I+ E
Sbjct: 197 DLVTDQPERFIMGELIREQILQQTRQEIPHSVAIVIE 233


>gi|215430606|ref|ZP_03428525.1| GTP-binding protein EngA [Mycobacterium tuberculosis EAS054]
 gi|219557637|ref|ZP_03536713.1| GTP-binding protein EngA [Mycobacterium tuberculosis T17]
 gi|289569764|ref|ZP_06449991.1| GTP-binding protein engA [Mycobacterium tuberculosis T17]
 gi|289753804|ref|ZP_06513182.1| GTP-binding protein EngA [Mycobacterium tuberculosis EAS054]
 gi|289543518|gb|EFD47166.1| GTP-binding protein engA [Mycobacterium tuberculosis T17]
 gi|289694391|gb|EFD61820.1| GTP-binding protein EngA [Mycobacterium tuberculosis EAS054]
          Length = 463

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD +  D    G    + DT G     
Sbjct: 29  VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 88

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
             +++   ++  + +  AD ++L+ +          +   I             K D   
Sbjct: 89  KGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSEK 148

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  L+S    E  H IS+  G G+ +L++ + + L    +    S
Sbjct: 149 GESDAAALWSLGLGE-PHAISAMHGRGVADLLDGVLAALPEVGESASAS 196



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 81/213 (38%), Gaps = 28/213 (13%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
            +  S      +  L + + + + +         G + + ++G  N GKSSL N LA   
Sbjct: 164 PHAISAMHGRGVADLLDGVLAALPEVGESASASGGPRRVALVGKPNVGKSSLLNKLAGDQ 223

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENAD 300
            ++V +  GTT D +   ++L G + +  DTAG+R         E     RT   +++A+
Sbjct: 224 RSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRRKVGQASGHEFYASVRTHAAIDSAE 283

Query: 301 LILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYSTYTEEY------------- 339
           + ++L + +            +        +    K DL      E              
Sbjct: 284 VAIVLIDASQPLTEQDLRVISMVIEAGRALVLAYNKWDLVDEDRRELLQREIDRELVQVR 343

Query: 340 ---DHLISSFTGEGLEELINKIKSILSNKFKKL 369
                 IS+ TG  + +L+  ++  L++   ++
Sbjct: 344 WAQRVNISAKTGRAVHKLVPAMEDALASWDTRI 376


>gi|332975861|gb|EGK12739.1| GTP-binding protein Era [Desmospora sp. 8437]
          Length = 300

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 71/195 (36%), Gaps = 22/195 (11%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
             ++G+ + ++G  N GKS+L N +  + VAI++D P TTR+ +      E   +   DT
Sbjct: 5   AFKSGF-VTLIGRPNVGKSTLLNQVLGQKVAIMSDKPQTTRNKIRGVYTTEAEQIIFLDT 63

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
            GI +    +    ++      E  D+IL L +             E           + 
Sbjct: 64  PGIHKPKSRLGDWMVQTARETFEEVDVILFLVDAKEGMGPGDRFIMEQLKAVKTPVFLVV 123

Query: 327 TKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         L   Y + +       +S+  G     L++ I+  L       P   
Sbjct: 124 NKIDQVHPDTLLPLIDRYRKTFSFKEVVPVSALYGNNTTTLLDLIRRELPEGPAYYPSEY 183

Query: 374 PSHKRHLYHLSQTVR 388
            +     + + + VR
Sbjct: 184 VTDHPERFIIGELVR 198


>gi|308235717|ref|ZP_07666454.1| bifunctional cytidylate kinase/GTP-binding protein [Gardnerella
           vaginalis ATCC 14018]
 gi|311114732|ref|YP_003985953.1| ribosome-associated GTPase EngA [Gardnerella vaginalis ATCC 14019]
 gi|310946226|gb|ADP38930.1| ribosome-associated GTPase EngA [Gardnerella vaginalis ATCC 14019]
          Length = 734

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA ++ ++V D+ GTTRD +   + ++G      DTAGI+  
Sbjct: 474 RVALVGRPNVGKSSLLNHLAHEERSVVNDLAGTTRDPVDEVVRVDGEDWLFIDTAGIKRR 533

Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEIN---SKKEI-----SFPKNIDFIFIGTKS 329
                  E     RT   +E ++L L+L + +   +++++     +       + +  K 
Sbjct: 534 QHKLTGAEYYSSLRTQAAIERSELALILFDSSQPIAEQDLKVMSQAVDAGRAIVLVFNKW 593

Query: 330 DLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL   ++ +                    +S+ TG     L   +++ L +  K++P  
Sbjct: 594 DLMDEFSRQRMERLWKTEFERVTWAERVNLSAKTGWHTNRLARAMRTALDSWDKRIPTG 652



 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 92/240 (38%), Gaps = 19/240 (7%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L  +   ++  ++  E +          L+D    +  +S   +     +  +    I
Sbjct: 243 QTLDALVEIVDDAIEQDEYDRYAANLEGYDLDDED--RALLSGDFASDDESKDTKAVGVI 300

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G  N GKS+L N +    VA+V D PG TRD ++ D +  G   K+ DT G     +
Sbjct: 301 AVIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFKLVDTGGWEADVE 360

Query: 283 IVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSD--LY 332
            ++    ++  + V  +D ++ L +         ++ +S  +           K D    
Sbjct: 361 GIDSSIAQQAQVAVRLSDAVIFLVDGQVGLTATDERIVSMLRAAGKPITLAVNKVDDARS 420

Query: 333 STYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
              T E+        + IS+  G G+ +L++   + L    K   F  P   R +  + +
Sbjct: 421 EYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALNSLKKANKTSGFLTPEGLRRVALVGR 480


>gi|17228407|ref|NP_484955.1| GTP-binding protein Era [Nostoc sp. PCC 7120]
 gi|17130258|dbj|BAB72869.1| GTP-binding protein [Nostoc sp. PCC 7120]
          Length = 337

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 98/248 (39%), Gaps = 23/248 (9%)

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           ++N +++  +  I    + +S  +S  +     ++G+ I I+G  N GKS+L N L  + 
Sbjct: 11  LENMTAELKVASIDNHISSLSGEVSIPQAPPEFKSGF-IGIIGRPNVGKSTLMNQLVGQK 69

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +AI + +  TTR+ L   +      +   DT GI +    + +  +K   L +E+ D++L
Sbjct: 70  IAITSPVAQTTRNRLRGIVTTPEAQLIFVDTPGIHKPHHQLGEVLVKNAKLAIESVDVVL 129

Query: 304 LLKE------INSK--KEISFPKNIDFIFIGTKSDLYSTYTEEYD--------------H 341
            + +         +   ++        I    K D     +++ D               
Sbjct: 130 FVVDGAVACGAGDRFIADLLIHSKTPVILGINKVDQQPPDSQKIDESYQQLASAYQWPTV 189

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
             S+ TG  L +L   +   L +     P  + + +   + + + +R   +    E+   
Sbjct: 190 KFSAKTGAELPQLQELLVEHLEHGPYYYPPDLVTDQPERFIMGELIREQILLLTREEVPH 249

Query: 402 LDIIAENL 409
              IA +L
Sbjct: 250 SVAIAIDL 257


>gi|260200776|ref|ZP_05768267.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46]
 gi|289443171|ref|ZP_06432915.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46]
 gi|289416090|gb|EFD13330.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46]
          Length = 285

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD +  D    G    + DT G     
Sbjct: 29  VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 88

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
             +++   ++  + +  AD ++L+ +          +   I             K D   
Sbjct: 89  KGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSEK 148

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  L+S    E  H IS+  G G+ +L++ + + L    +    S
Sbjct: 149 GESDAAALWSLGLGE-PHAISAMHGRGVADLLDGVLAALPEVGESASAS 196



 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 4/122 (3%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
            +  S      +  L + + + + +         G + + ++G  N GKSSL N LA   
Sbjct: 164 PHAISAMHGRGVADLLDGVLAALPEVGESASASGGPRRVALVGKPNVGKSSLLNKLAGDQ 223

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENAD 300
            ++V +  GTT D +   ++L G + +  DTAG+R         E     RT   +++A+
Sbjct: 224 RSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRRKVGQASGHEFYASVRTHAAIDSAE 283

Query: 301 LI 302
           + 
Sbjct: 284 VA 285


>gi|28493018|ref|NP_787179.1| bifunctional cytidylate kinase/GTP-binding protein [Tropheryma
           whipplei str. Twist]
 gi|28572231|ref|NP_789011.1| bifunctional cytidylate kinase/GTP-binding protein [Tropheryma
           whipplei TW08/27]
 gi|28410362|emb|CAD66748.1| putative GTP-binding protein [Tropheryma whipplei TW08/27]
 gi|28476058|gb|AAO44148.1| cytidylate kinase/GTP-binding protein fusion [Tropheryma whipplei
           str. Twist]
          Length = 686

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 17/155 (10%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  +VI+G  N GKS+L N +  +  A+V + PG TRD +       G    + DT G  
Sbjct: 254 GATVVIVGRPNVGKSALVNCILGRREAVVENRPGVTRDRVVYPAFWAGRPFTLVDTGGWE 313

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSD 330
              + ++ E + +  + +  AD+I+ + ++      +          +N     +  K+D
Sbjct: 314 CDAEGLDAEVVAQAEIGMSIADIIIFVVDVQHGPVSTDAVIARNLQRQNKPIFLVANKAD 373

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELIN 356
             S+ ++               S+  G G+ +L++
Sbjct: 374 NASSDSDVAQFWSLGLGQPYACSATHGRGVADLMD 408



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 27/192 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278
           ++ ++G  N GKSSL N L     AIV D+ GTTRD L     +        DTAG+R  
Sbjct: 427 RVALIGRPNVGKSSLINQLTNSRRAIVDDLAGTTRDPLDALAVIGDKSWLFVDTAGLRRK 486

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
            ++    +     R    +   ++ LLL + +           E+        +    K 
Sbjct: 487 FKSQKGADFYAYLRATTVLRRTEIALLLLDASHAITEQDVRIAEMVVESGRALVIAINKW 546

Query: 330 DLYST-----YTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           DL           E D+             S+ TG G+++L   +++ L+N   +L  + 
Sbjct: 547 DLLDEERRYWLEREIDNTFFRFAWAPRVNISARTGRGVKQLATALQTALTNWNTRLNTAR 606

Query: 374 PSHKRHLYHLSQ 385
            +H        Q
Sbjct: 607 VNHFLQRITREQ 618


>gi|206895221|ref|YP_002246509.1| small GTP-binding protein domain [Coprothermobacter proteolyticus
           DSM 5265]
 gi|206737838|gb|ACI16916.1| small GTP-binding protein domain [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 424

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 17/164 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
            I I+G  N GKSSL NA+A +D+A+V+D+PGTT D +   L+++    V + DT G+ +
Sbjct: 17  HIAIVGRRNVGKSSLINAIAGQDIALVSDVPGTTTDPVYKTLEVKPLGPVTLIDTPGLDD 76

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPKNIDFIFIG--TKSDLYS 333
              + +K  ++R    +  AD  +L+ +          +S  +N+   F+    KSD+  
Sbjct: 77  EGLLGQKR-VERAKRALYKADAAILVVDDKPGAFEDFIVSLLRNLSIPFVIAVNKSDVTE 135

Query: 334 ---TYTEEYDHLI------SSFTGEGLEELINKIKSILSNKFKK 368
              T  ++Y+         ++  G+ + ELI  + S+L ++ +K
Sbjct: 136 DTKTLVKDYEPFNVPVVKVAAAQGKNISELIQVLSSLLPDEEEK 179


>gi|327399427|ref|YP_004340296.1| GTP-binding protein engA [Hippea maritima DSM 10411]
 gi|327182056|gb|AEA34237.1| GTP-binding protein engA [Hippea maritima DSM 10411]
          Length = 434

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 15/164 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+LFNAL KK+ +++ D+PGTTRD +     ++   V   DT G  ET
Sbjct: 3   KVAIVGKPNVGKSTLFNALVKKNKSLILDMPGTTRDRIFEYGKIDDKDVLFIDTGGF-ET 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDL- 331
           +    +   ++  L ++++D ++++ ++ +   I   +           +I    KSD+ 
Sbjct: 62  EGEFSQNINEQIKLAIDSSDAVIVVFDLTTPLSIQDEEIFKYVVKSKKPYILTANKSDIK 121

Query: 332 -----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                Y  Y       IS+     L  L  K+ S+++   K+  
Sbjct: 122 KQEFEYDYYKFGDILKISAAHKRNLNTLKEKLGSLINEVEKRAD 165



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 29/222 (13%)

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
              ++  LK  + S I++ +  +      KI I G SN GKSSL NA+  ++ ++V+D  
Sbjct: 142 HKRNLNTLKEKLGSLINEVE--KRADCLAKIAITGRSNVGKSSLINAILGENRSVVSDKI 199

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           GTT D +            + DTAGIR   +T   ++K     +F  ++ +D+ + L + 
Sbjct: 200 GTTTDSIDTPFIYNSNCYLLIDTAGIRKKAKTKKAIDKLSSIFSFFAIDRSDICVFLIDA 259

Query: 309 NSKK--------EISFPKNIDFIFIGTKSDLYST---------YTEEYDHLI-------S 344
                       +    KN   I    K DL              E             S
Sbjct: 260 KEGLTSTDKFIIDKIIEKNKGLIIALNKWDLVKNTPFSEYEKLLKEHLPFAWFAEFMPIS 319

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           +   + + +L+ KI+S+     +++P    + K H       
Sbjct: 320 AIEVKNIGKLLKKIESVEKICSRRIPTHELNEKLHTIIRQNA 361


>gi|327440936|dbj|BAK17301.1| GTPase [Solibacillus silvestris StLB046]
          Length = 304

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 81/199 (40%), Gaps = 22/199 (11%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  +  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +   L  +     
Sbjct: 2   QENKGYKSGF-VSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTQQNSQTI 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDF 322
             DT GI +    + +  +K +   +   D+I+ +               E+        
Sbjct: 61  FIDTPGIHKPKHKLGEFMLKTSRNALREVDVIMFMVNAEQAIGKGDEFIIELLQGNKTPV 120

Query: 323 IFIGTKSDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKL 369
             I  K DL           +Y +++D      IS+  G  +E L++ I+  L    +  
Sbjct: 121 FLIINKIDLVHPDELVKIIDSYKDKFDFAEIIPISALQGNNVENLLSTIEKYLPEGPQYY 180

Query: 370 PFSIPSHKRHLYHLSQTVR 388
           P    +     + +S+ +R
Sbjct: 181 PADQVTDHPERFIISELIR 199


>gi|300864576|ref|ZP_07109435.1| GTP-binding protein Era [Oscillatoria sp. PCC 6506]
 gi|300337400|emb|CBN54583.1| GTP-binding protein Era [Oscillatoria sp. PCC 6506]
          Length = 350

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 93/233 (39%), Gaps = 26/233 (11%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
            + +S+ I     G   ++G+   I+G  N GKS+L N L  + +AI + +  TTR+ L 
Sbjct: 41  IDLLSTMIPAAPAG--YKSGF-AGIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLR 97

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------- 312
             L  E   +   DT GI +    + K  +    L + + D++L + + +          
Sbjct: 98  GILTTEEAQIIFVDTPGIHKPHHQLGKVLVHNAQLAIHSVDVLLFVVDASVPAGGGDRYI 157

Query: 313 -EISFPKNIDFIFIGTKSD---------LYSTYTEEYD------HLISSFTGEGLEELIN 356
            ++        I    KSD         L +TYT+  +         S+ TGEG+E L  
Sbjct: 158 VDLLVNTQTPVILGLNKSDQQPSESQAQLDNTYTQLIEAKQWPIVKFSALTGEGVEALQQ 217

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            +   L       P  + + +   + + + +R   +    E+      IA ++
Sbjct: 218 ILIEHLEPGPYYYPPDLVTDQPERFIMGELIREQILLLTREEIPHSVAIAIDI 270


>gi|304315770|ref|YP_003850915.1| small GTP-binding protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777272|gb|ADL67831.1| small GTP-binding protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 411

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 20/172 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  NAGKSS+ NAL  +++AIV+D+ GTT D +   +++     V I DTAG+ 
Sbjct: 10  LHIAIFGRRNAGKSSIINALTNQNIAIVSDVAGTTTDPVQKAMEILPIGPVVIIDTAGLD 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD 330
           +T ++ E   +K+T+  +   DL LL+ +        ++EI      KNI  + +  K D
Sbjct: 70  DTGELGELR-VKKTYEVLNRTDLALLIIDGTIGPSEFEEEILKKIKEKNIPVVGVVNKVD 128

Query: 331 LYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L   +  +               S+ +G G+EEL  +I        ++L   
Sbjct: 129 LVDFHFSKKTEWEKRLKLELVETSANSGYGIEELKRQIIKKAPYDDRELSLV 180


>gi|154149467|ref|YP_001405674.1| GTP-binding protein EngA [Campylobacter hominis ATCC BAA-381]
 gi|166224322|sp|A7HZI3|DER_CAMHC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|153805476|gb|ABS52483.1| GTP-binding protein EngA [Campylobacter hominis ATCC BAA-381]
          Length = 460

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 18/197 (9%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
           D +  ++S+I   LD     D       E  +D +   ++    + +           K+
Sbjct: 147 DGIDEVKSWIYKLLDDEISADE-----SENFDDFISNLDENGEILEEKDESFYENKPIKV 201

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  N GKSSL NAL K++ A+V+++ GTT D +  +      +++  DTAGIR+   
Sbjct: 202 GIIGRVNVGKSSLLNALVKENRAVVSEVAGTTIDPVNENYTFNDKVIEFVDTAGIRKRGK 261

Query: 283 I--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
           I  +EK  + RT   +E  D+ L++ + +            ++    +  I +  K D  
Sbjct: 262 IEGIEKFALNRTEKILEQCDIALMVLDASEPFSELDERIAGLAAKFELGVIIVLNKWD-- 319

Query: 333 STYTEEYDHLISSFTGE 349
               E++D +      +
Sbjct: 320 -KSEEDFDKVQKKIKDK 335



 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 75/168 (44%), Gaps = 18/168 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++++G  N GKSSLFN    K +AI +DI GTTRD     +++      + D+ G+ ++
Sbjct: 3   KVILIGRPNVGKSSLFNRFVGKRIAITSDISGTTRDTNKTVIEIFDKKCILIDSGGLDDS 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFP---KNIDFIFIGTKSDLY 332
            ++  K    +T  EV N D+IL + +      + +K++       N     +  K D  
Sbjct: 63  SEMFAK-VQAKTLKEVRNCDIILFIVDGKFMPSDDEKKLFHSFSGLNKPLALVINKIDSK 121

Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                 ++           IS    +G++E+ + I  +L ++      
Sbjct: 122 KDEERSFEFIEFGAKDKFNISVSHNDGIDEVKSWIYKLLDDEISADES 169


>gi|39939111|ref|NP_950877.1| GTP-binding protein Era [Onion yellows phytoplasma OY-M]
 gi|39722220|dbj|BAD04710.1| glycyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
          Length = 295

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 33/244 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKS+L NAL ++ VAI +  P TTR  +              DT GI +  
Sbjct: 12  IAILGRPNVGKSTLLNALTQQKVAITSAKPQTTRHKIIGICHEPNAQYIFVDTPGINQYK 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFPK-----NIDFIFIGTKSDLYSTY 335
            ++ ++     F  +++ DLIL L +     KE +  K           +  K D     
Sbjct: 72  HLLNQKMNNIAFQSIKDVDLILFLTDSFYHPKEETLLKMIFQTKKPVFLVINKIDRLKNK 131

Query: 336 TE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           ++              +    +S+   +    L   I   +       P  + + ++   
Sbjct: 132 SQIDAIILSYLNHFSFQTVIPLSAIKAKNTTFLKENIYQNIKPGVAYYPQDMITDQKKEL 191

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE-----QLLDIIFSKF 436
            +++ +R   +  ++E+      +          L +I G + VE     Q+L       
Sbjct: 192 WIAEIIREKVLYYVHEEIPHASAVIIEKMEQKEHLLEIWGLILVERSSQKQIL------- 244

Query: 437 CIGK 440
            IGK
Sbjct: 245 -IGK 247


>gi|19703615|ref|NP_603177.1| GTP-binding protein Era [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|25008422|sp|Q8RGM1|ERA_FUSNN RecName: Full=GTPase Era
 gi|19713721|gb|AAL94476.1| GTP-binding protein era [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 296

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
            ++ +         +++ D+IL L + +             I+       I +  K DL 
Sbjct: 66  HLLGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENSKKPRILLVNKVDLI 125

Query: 333 STYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           S   +              +     S     G+ +L+  +   L +  K  P  + +   
Sbjct: 126 SDEQKEEKIKEIEEKLGKFDKIIFASGMYSFGISQLLEALDPYLEDGVKYYPDDMYTDMS 185

Query: 379 HLYHLSQTVR 388
               +++ VR
Sbjct: 186 TYRIITEIVR 195


>gi|222823547|ref|YP_002575121.1| predicted GTP-binding protein [Campylobacter lari RM2100]
 gi|254783143|sp|B9KFN5|DER_CAMLR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|222538769|gb|ACM63870.1| conserved hypothetical protein, predicted GTP-binding protein
           [Campylobacter lari RM2100]
          Length = 461

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 92/214 (42%), Gaps = 26/214 (12%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +NF   +   D      +   +    KL  I  N  K+ I+G  N GKSSL NAL K++ 
Sbjct: 162 ENFLDADDEEDFESYLENFDENSGDFKLKTINENHIKVGIIGRVNVGKSSLLNALVKEER 221

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV--EKEGIKRTFLEVENADLI 302
           ++V+DI GTT D +   +  +  +++  DTAGIR+   I   E+  + RT   + NA + 
Sbjct: 222 SVVSDIAGTTIDPVNESIMHKDKIIEFVDTAGIRKRGKIQGLERYALNRTEYALTNAQIA 281

Query: 303 LLLKEIN------SKKEISFPKNID--FIFIGTKS----------------DLYSTYTEE 338
           LL+ +         ++            I +  K                 D +      
Sbjct: 282 LLVLDAAEGFNELDERIAGLAAKHCLGVIIVLNKWDKSELDFDKTLKELKLDRFKFLAYA 341

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               +S+ +G+ +  L++KI  + +N  +K+P +
Sbjct: 342 PVISVSALSGKRVHVLLDKILEVFANFTQKIPTA 375



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 18/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN LA+K +AI +DI GTTRD   I++ ++G    + D+ G+ E++
Sbjct: 4   IILIGKPNVGKSSLFNRLARKRIAITSDISGTTRDTNKIEVQIDGKKALLIDSGGLDESN 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISF-----PKNIDFIFIGTKSDLYS 333
           ++  K     +    +N+D+I  + +   +   ++ +F       N     +  K D   
Sbjct: 64  ELF-KNVKANSLKAAKNSDIIFYMVDGKFLPDDEDKAFFYEMKKLNKPIALVINKIDNKK 122

Query: 334 TYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                ++           IS     G++EL       L+  F     
Sbjct: 123 DEERSWEFSNFGVKEVFNISVTHNIGIDELCMWASKFLNENFLDADD 169


>gi|167949211|ref|ZP_02536285.1| tRNA modification GTPase TrmE [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 90

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENL 409
           +E L   +K  +    +       + +RHL  L +    LE  +   K     +I+AE L
Sbjct: 1   MELLRQHLKQSVGFG-ESSEGEFMARRRHLDALQRAATALERGNQQFKQFTAGEILAEEL 59

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           R A  +L +ITG    + LL  IFS FCIGK
Sbjct: 60  RQAQQALNEITGEFCADDLLGRIFSSFCIGK 90


>gi|298387441|ref|ZP_06996993.1| GTP-binding protein [Bacteroides sp. 1_1_14]
 gi|298259648|gb|EFI02520.1| GTP-binding protein [Bacteroides sp. 1_1_14]
          Length = 405

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 27/181 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V+D PGTT D +   +++ G       DT G
Sbjct: 10  NRLHIALFGKRNSGKSSLINALTGQDTALVSDTPGTTTDPVQKAMEIHGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK----------EINSKKEISF-----PKNID 321
             +  ++  +  I+ T+  VE  D+ LLL           E +  +E+ +      KNI 
Sbjct: 70  FDDEGELGNRR-IECTWKAVEKTDIALLLCAGGGSAEETGEPDFTEELHWLEQLKAKNIP 128

Query: 322 FIFIGTKSDLYSTYT----------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            I +  K+D+                     +S+    G+E +   I   L   F +   
Sbjct: 129 TILLINKADIRKNTASLAIRIKETFGSQPIPVSAKEKTGVELIRQAILEKLPEDFDQQSI 188

Query: 372 S 372
           +
Sbjct: 189 T 189


>gi|85373044|ref|YP_457106.1| GTP-binding protein EngA [Erythrobacter litoralis HTCC2594]
 gi|84786127|gb|ABC62309.1| predicted GTPase [Erythrobacter litoralis HTCC2594]
          Length = 485

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++I+G  N GKS+LFN L  K +A+V D PG TRD    D +L G    + DTAG  + D
Sbjct: 9   VIIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRMGDAELAGMEFTVVDTAGWEDDD 68

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD-- 330
            D +      +T + +E AD  L + +  +      +EI+       +  + +  K++  
Sbjct: 69  KDSLPGRMRAQTEVSLEGADAALFVIDARAGITPLDEEIARWLRTVEVPVVLVANKAEGK 128

Query: 331 -----LYSTYTEEY--DHLISSFTGEGLEELINKI 358
                L  +Y         +S+  GEG+ +L   +
Sbjct: 129 AGDAGLLESYALGLGDPAPVSAEHGEGIADLFEGL 163



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 80/193 (41%), Gaps = 35/193 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL------EGYLVKISD 273
            K+ I+G  NAGKS+L N L  +D  +     G TRD +++D         E   +++ D
Sbjct: 199 LKLAIVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSISVDWQWTDPKSGEPRDIRLID 258

Query: 274 TAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDF 322
           TAG+R+   +    EK  +   F  V+ A++++LL +     E            +    
Sbjct: 259 TAGMRKRARVTEKLEKLSVADAFRAVDFAEVVVLLLDATQGLEHQDLKIASKVLEEGRAL 318

Query: 323 IFIGTKSDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSN 364
           +    K D+    +  ++                    +S+ TG+GL+E++     I  +
Sbjct: 319 MIAINKWDIAEDASYLFNGIRAALDEGLSQVRGLPLFAVSAKTGKGLDEMLRAAFEIRES 378

Query: 365 KFKKLPFSIPSHK 377
             K++P +  +  
Sbjct: 379 WSKRVPTAALNRW 391


>gi|237756936|ref|ZP_04585406.1| GTP-binding protein EngA [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237690908|gb|EEP60046.1| GTP-binding protein EngA [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 209

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 18/162 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IR 278
           +++ I+G  N GKSSLFN +  +  AIV D+PG TRD +    +  G   ++ DT G I 
Sbjct: 2   FRVAIVGRPNVGKSSLFNRIIGQRKAIVEDVPGVTRDRIVSTAEWRGVKFEVVDTGGYIT 61

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
             +D       K+   E+E +DL + + +              I        I    K D
Sbjct: 62  GDEDKFAPYIRKQVEKELELSDLFIFVVDGKQGLTPLDKEIANILHRTEKPVIVAVNKID 121

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
                   Y+           IS+    GL EL++K+   + 
Sbjct: 122 DTEKEKLAYEFYELGFENIISISTIQKLGLAELLDKVVEYIP 163



 Score = 45.6 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 3/93 (3%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDV---QNFSSKEVLNDILFLKNDISSHISQGKLGE 214
             +  D      ++   +L F     +   Q     E+L+ ++    +    I + +  E
Sbjct: 117 VNKIDDTEKEKLAYEFYELGFENIISISTIQKLGLAELLDKVVEYIPEYEKEIQEEEEKE 176

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             R+  K+ I+G  NAGKSSL NAL  ++  +V
Sbjct: 177 EKRDYIKVAIVGKPNAGKSSLINALLNEERVLV 209


>gi|302038214|ref|YP_003798536.1| GTP-binding protein Era-like protein [Candidatus Nitrospira
           defluvii]
 gi|300606278|emb|CBK42611.1| GTP-binding protein Era homolog [Candidatus Nitrospira defluvii]
          Length = 294

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 87/202 (43%), Gaps = 25/202 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G SN GKS+L N L K+ +AIV+D P TTR  +     +EG  +   DT G  E  
Sbjct: 6   VAIIGRSNVGKSTLLNRLLKEKIAIVSDKPQTTRTRILGVAHVEGAQIVFLDTPGFHEPH 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTKS 329
            ++ +  ++ T    ++AD++ ++ E  ++            K+    +    + +  K 
Sbjct: 66  HLLNRRMVRTTLDTFDDADVLYVVVEATAQPGPGDLAVIEHVKQAVAKQARPVVLVINKV 125

Query: 330 DLYST-----YTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           DL +        E+Y           +S+ T + ++ L++   S+L+         + + 
Sbjct: 126 DLVNKSRLLPLMEQYLRIFPWTEIVPVSAETADNVDRLLSVTVSLLAEGEATFGDDVVTD 185

Query: 377 KRHLYHLSQTVRYLEMASLNEK 398
           +      ++ +R   +    E+
Sbjct: 186 QSMRTLAAELIREKILQQTYEE 207


>gi|288555745|ref|YP_003427680.1| Era/ThdF family GTP-binding protein [Bacillus pseudofirmus OF4]
 gi|288546905|gb|ADC50788.1| Era/ThdF family GTP-binding protein [Bacillus pseudofirmus OF4]
          Length = 303

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D P TTR+ +          V   DT GI +  
Sbjct: 13  VSIIGRPNVGKSTLLNYVIGQKIAIMSDKPQTTRNKIQGVYTSNESQVVFIDTPGIHKPK 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSD--- 330
             +    +K     +   DLIL + +            I   K        +  K D   
Sbjct: 73  HKLGDFMMKVAQNTLREVDLILYVVDAGEAFGSGEEFIIERLKETKTPVFLVINKIDKVQ 132

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +  TY  ++D      +S+  G  +  L+ +I   L    +  P    +     
Sbjct: 133 PDDLLGIIETYRTKFDFTEVIPVSALQGSNVPTLMEQIVDHLEEGPQYYPSDQVTDHPER 192

Query: 381 YHLSQTVR 388
           + +++ +R
Sbjct: 193 FIVAELIR 200


>gi|332798243|ref|YP_004459742.1| small GTP-binding protein [Tepidanaerobacter sp. Re1]
 gi|332695978|gb|AEE90435.1| small GTP-binding protein [Tepidanaerobacter sp. Re1]
          Length = 397

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 15/162 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NA+  +++A+V+D PGTT D +   ++L     V   DTAG
Sbjct: 8   NRLHIGLFGRRNSGKSSLINAITGQEIALVSDFPGTTTDPVYKAMELLPIGPVVFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
           + +  D+ E   IK+T   ++  D+ L++    +          +    +NI  I +  K
Sbjct: 68  LDDVGDLGELR-IKKTLEVMDKTDIALVVFSTENLDFSLEKRWCQELRSRNIPIIGVVNK 126

Query: 329 SDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            D         T+E+D      +     E I K+K ++    
Sbjct: 127 IDKRDVDIKDLTKEFDFPFIKVSANK-RENIGKLKEMIHQNA 167


>gi|188997612|ref|YP_001931863.1| GTP-binding protein Era [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932679|gb|ACD67309.1| GTP-binding protein Era [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 307

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 23/197 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+ + I+G  N GKS+L N +    ++IV+  P TTR  +     L    +   D
Sbjct: 8   ENFRAGF-VAIVGRPNVGKSTLLNNIIGTKLSIVSPRPQTTRMRILGVKHLPDAQIIFLD 66

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI------DFIF 324
           T G+++  D++ K  ++     +E+AD+IL++ +     +K++    +N         I 
Sbjct: 67  TPGVQKGGDLLTKSVMEFVISGIESADVILMVIDAETGWTKEDKEIVENYLKKVDKPAIL 126

Query: 325 IGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPF 371
              K D         L    T+ YD      IS+     ++ELI  IK  L       P 
Sbjct: 127 AINKIDKIKRDLVLPLIEESTKIYDFKEFVPISAIKNLNIDELIETIKKYLPESLPLYPE 186

Query: 372 SIPSHKRHLYHLSQTVR 388
              +     +++++ +R
Sbjct: 187 DQITDLPLKFYIAEIIR 203


>gi|300173398|ref|YP_003772564.1| GTP-binding protein era [Leuconostoc gasicomitatum LMG 18811]
 gi|299887777|emb|CBL91745.1| GTP-binding protein era [Leuconostoc gasicomitatum LMG 18811]
          Length = 303

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   V   DT GI +  
Sbjct: 11  VTIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDSAQVVFIDTPGIHKPQ 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDL- 331
           + +    +K  F  +  AD I  + + +  +          +   KN     +  K DL 
Sbjct: 71  NSLGDFMVKSAFSALHGADAIWFVVDASMPRGRGDDFIINRLKEIKNTAIYLLINKVDLL 130

Query: 332 --------YSTYTEEYDHL-----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                    ++Y E+         IS+  G+ + EL++ + + L    +       +   
Sbjct: 131 APKDLLNVIASYQEDAPEWAEVFPISAREGDNVSELLDNVVAGLDEGPQYFDADQLTDHP 190

Query: 379 HLYHLSQTVR 388
             + + + +R
Sbjct: 191 ERFVIGELIR 200


>gi|322380446|ref|ZP_08054647.1| GTP-binding protein EngA [Helicobacter suis HS5]
 gi|321147128|gb|EFX41827.1| GTP-binding protein EngA [Helicobacter suis HS5]
          Length = 348

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 25/178 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  N GKSSL NAL +++ A+V++IPGTT D +   +      +   DTAG+R+
Sbjct: 87  IQVGIIGRVNVGKSSLLNALIEQERALVSEIPGTTIDPVDQSISHHNQEICFVDTAGLRQ 146

Query: 280 TDDIV--EKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKS 329
              +   EK  + RT   +E + + LL+ + ++       K        N+  I +  K 
Sbjct: 147 RSKVEGLEKFALDRTRKVLEKSHIALLVLDASTPFVELDEKIASLAGEYNLGVIVVFNKW 206

Query: 330 DL----YSTYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D+    + T  E++ H             S+ +   + ++ +KI  + +    ++  S
Sbjct: 207 DIKHAGFETIIEDFKHKFKFLQYAPLLTTSAISKRHILQIKDKILEVYAYFSMRISTS 264


>gi|229827515|ref|ZP_04453584.1| hypothetical protein GCWU000182_02904 [Abiotrophia defectiva ATCC
           49176]
 gi|229788453|gb|EEP24567.1| hypothetical protein GCWU000182_02904 [Abiotrophia defectiva ATCC
           49176]
          Length = 305

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 75/198 (37%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI +  P TTR+ +      E   +   DT GI +  
Sbjct: 9   VTLIGRPNVGKSTLMNNLIGQKIAITSSKPQTTRNRIQTVYTDETGQIIFLDTPGIHKAQ 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSD--- 330
           + + +         +   D++L L E  +          E+        I +  K D   
Sbjct: 69  NKLGEYMDSVAERTLSEVDVVLWLVEPTTFIGKGEQHIAELLSATKTPVILVVNKIDTVE 128

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y +  +      +S+ TGE  E+L+  +  +L          + + +   
Sbjct: 129 KGELLPVIDKYKDMVNFKACVPVSAATGENKEDLLETVFDLLPEGPMYYDEDVVTDQAER 188

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++ +R   +  L ++
Sbjct: 189 QITAELIREQALRRLKDE 206


>gi|13476158|ref|NP_107728.1| GTP-binding protein EngA [Mesorhizobium loti MAFF303099]
 gi|26006731|sp|Q986D9|DER_RHILO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|14026918|dbj|BAB53514.1| GTP-binding protei [Mesorhizobium loti MAFF303099]
          Length = 479

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  N GKS+LFN L  + +A+V D PG TRD       L      + DTAG  +
Sbjct: 3   FKVAIIGRPNVGKSTLFNRLVGRKLALVDDTPGVTRDRRVHAAKLYDLHFDVIDTAGFED 62

Query: 280 TDDIVE-KEGIKRTFLEVENADLILL--------LKEINSKKEISFPKNIDFIFIGTKSD 330
                       +T + +  ADLI          L +  +  EI        + +  K++
Sbjct: 63  AGASTLPGRMRAQTEIAIHEADLIFFTIDAKSGLLPDDRTFAEIVRKSGKPVVLVANKAE 122

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
                    +            S+  G+G+ +L + + + L
Sbjct: 123 AKGAQGGMLEAWELGLGEPIPVSAEHGQGMPDLRDAVIAAL 163



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 76/193 (39%), Gaps = 31/193 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I ++G  NAGKS+L NAL  ++  +     G TRD +++D D  G  +K+ DTAG+R 
Sbjct: 208 MRIAVVGRPNAGKSTLINALIGEERLLTGPEAGITRDSISVDWDWHGRRLKLFDTAGMRR 267

Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              I EK     ++     +  A++++++ +     E        +   +    +    K
Sbjct: 268 KARIHEKLEVMSVQDGLRAIRFAEIVIIVLDATIPFEKQDLQIADLIIREGRAPVIAFNK 327

Query: 329 SDLYS------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL                             +S+ TG GL++L++ +         ++ 
Sbjct: 328 WDLIDHPQELLAELREKTERLLPQVRGIQAVPVSAETGRGLDKLMDAVLRTHKVWNSRVS 387

Query: 371 FSIPSHKRHLYHL 383
                  R L  +
Sbjct: 388 TG--KLNRWLEAI 398


>gi|308375656|ref|ZP_07668082.1| putative small GTP-binding protein domain protein [Mycobacterium
           tuberculosis SUMu007]
 gi|308345614|gb|EFP34465.1| putative small GTP-binding protein domain protein [Mycobacterium
           tuberculosis SUMu007]
          Length = 215

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD +  D    G    + DT G     
Sbjct: 29  VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 88

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
             +++   ++  + +  AD ++L+ +          +   I             K D   
Sbjct: 89  KGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSEK 148

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                  L+S    E  H IS+  G G+ +L++ + + L  
Sbjct: 149 GESDAAALWSLGLGE-PHAISAMHGRGVADLLDGVLAALPE 188


>gi|227874499|ref|ZP_03992671.1| GTP-binding protein Era [Oribacterium sinus F0268]
 gi|227839643|gb|EEJ50101.1| GTP-binding protein Era [Oribacterium sinus F0268]
          Length = 319

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 24/219 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G  NAGKS+L NAL  + VAI +  P TTR+ +    D E   +   DT 
Sbjct: 24  VKSGF-VSIVGLPNAGKSTLLNALIGQKVAITSKKPQTTRNQIMAVYDEERGQIVFHDTP 82

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGT 327
           GI +  + +           + N DL+L + +   +K       +S  K      I +  
Sbjct: 83  GIHKAKNQLSVYMESVAEKALGNGDLVLYIVDATEQKGEKEEQILSLLKHSKRKIILVLN 142

Query: 328 KSDL----------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL             Y +E D      IS++  +GLEEL + +  +L    +      
Sbjct: 143 KLDLLGGEDAFLKKKEDYEKELDFAAIVGISAYKSQGLEELKDILFDLLPYGPRYYDEET 202

Query: 374 PSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRL 411
            + +      ++ +R   +  L+ E   G+ ++ +++R 
Sbjct: 203 ITDQPVREIAAELIREQALYKLDKEIPHGIAVLMDSMRE 241


>gi|258404637|ref|YP_003197379.1| GTP-binding protein EngA [Desulfohalobium retbaense DSM 5692]
 gi|257796864|gb|ACV67801.1| ribosome-associated GTPase EngA [Desulfohalobium retbaense DSM
           5692]
          Length = 441

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 93/260 (35%), Gaps = 28/260 (10%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET-----EMQRRLSMEGMSG 152
            L     L L          FE  +  +  A+ +  ++         + Q    +     
Sbjct: 53  ALVDTGGLVLDESDGVEADVFEQAREAMEGAQLILFVVDGRQGVSTIDEQLAAFLRQTDK 112

Query: 153 ELSSLYGQW-IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ-- 209
            +  +  +    +L    S     L F          S       L L+ +I   +    
Sbjct: 113 PVRLVINKVDGAELEDTLSAEFYALGFPLS-----AVSAAHGYGTLTLQEEIEETLQGLG 167

Query: 210 ---GKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
               + GE   +   ++ +LG  N GKSSL NAL  +   +V+   GTT D++ +  + +
Sbjct: 168 AVPVEEGEQEDDITLRLALLGRPNVGKSSLINALVGEKRLVVSPEAGTTTDIVDVLFEKK 227

Query: 266 GYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISF 316
           G      D+AG+R   + DD +E+  + R     + A + +L  +         KK +SF
Sbjct: 228 GKRYIFLDSAGVRRRSKIDDSLERFSVLRALRNSKRAQVTVLCLDALQGVVGQDKKLLSF 287

Query: 317 PKNIDFIFI--GTKSDLYST 334
                  FI    K DL  +
Sbjct: 288 LDREKIPFIVAVNKVDLVPS 307



 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 18/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS+LFN L +K  A+  D PG TRD L  ++        + DT G+  + 
Sbjct: 5   VALIGRRNVGKSTLFNRLIRKQKALTHDRPGVTRDRLYAEVPHGEPPFALVDTGGLVLDE 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPK--NIDFIFIGTKSD-- 330
            D VE +  ++    +E A LIL + +         ++  +F +  +     +  K D  
Sbjct: 65  SDGVEADVFEQAREAMEGAQLILFVVDGRQGVSTIDEQLAAFLRQTDKPVRLVINKVDGA 124

Query: 331 -LYSTYTEEYDH------LISSFTGEGLEELINKIKSILSN 364
            L  T + E+         +S+  G G   L  +I+  L  
Sbjct: 125 ELEDTLSAEFYALGFPLSAVSAAHGYGTLTLQEEIEETLQG 165


>gi|72382687|ref|YP_292042.1| GTP-binding protein Era [Prochlorococcus marinus str. NATL2A]
 gi|72002537|gb|AAZ58339.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Prochlorococcus marinus str. NATL2A]
          Length = 313

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 83/198 (41%), Gaps = 24/198 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ I ++G  N GKS+  N    + +AI + I  TTR+ L + L  E   +   D
Sbjct: 9   EDFKSGF-IALIGRPNVGKSTFINKFIGEKIAITSPIAQTTRNRLKVILTNEKSQIIFVD 67

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFI-- 325
           T GI +   ++ +  ++     + + D +L++ E +          ++  +N+    I  
Sbjct: 68  TPGIHKPHHLLGERLVQSAKRSIGDVDAVLVIFEASHSPGRGDAFILNLIRNLKIPVIVA 127

Query: 326 GTKSDLYS---------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
             K DL +                 T       S+ TG+G  ELI++I+  L    +  P
Sbjct: 128 LNKWDLLALSQFKERKKEYFEFLEGTNWPVFCCSALTGQGCNELISEIEETLPFGPQLYP 187

Query: 371 FSIPSHKRHLYHLSQTVR 388
             +       + +++ +R
Sbjct: 188 SDMNCDHPEKFLIAEFIR 205


>gi|157414681|ref|YP_001481937.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni 81116]
 gi|172047057|sp|A8FKH3|DER_CAMJ8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157385645|gb|ABV51960.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747321|gb|ADN90591.1| GTP-binding protein engA [Campylobacter jejuni subsp. jejuni M1]
 gi|315932681|gb|EFV11611.1| small GTP-binding domain protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 460

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 29/240 (12%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL---GEIIRN 218
           + ++ ++       LD   E   +    + ++ D      D   H  +GK     E+ +N
Sbjct: 135 VKEIFNLSVTHNVGLDELYEWLEKFLHEEFLIPDEEENLEDFLEHYEEGKEFQFKEVDQN 194

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++  DTAGIR
Sbjct: 195 HIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIR 254

Query: 279 ETDDIV--EKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNI-DFIFIGTK 328
           +   I   E+  + RT   + ++ + LL+ +        + +      K+    I +  K
Sbjct: 255 KRGKIQGLERFALNRTEKILSHSQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNK 314

Query: 329 S----------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                            D +          +S+ +G+ +  L++KI  I  N  +K+  S
Sbjct: 315 WDKSEMDFDKTVKELHLDRFKFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTS 374



 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD     + +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           ++  K   K T    + +D+IL L +     +    +              +  K D   
Sbjct: 64  ELF-KNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVVNKVDNKK 122

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKF 366
                ++            S     GL+EL   ++  L  +F
Sbjct: 123 DEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFLHEEF 164


>gi|159903869|ref|YP_001551213.1| GTP-binding protein Era-like protein [Prochlorococcus marinus str.
           MIT 9211]
 gi|159889045|gb|ABX09259.1| GTP-binding protein ERA-like protein [Prochlorococcus marinus str.
           MIT 9211]
          Length = 314

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 78/198 (39%), Gaps = 24/198 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +I R+G+ + ++G  N GKS+L N L  + V+I + +  TTR+ L   L  +   +   D
Sbjct: 9   KIFRSGF-VALIGRPNVGKSTLVNELVGQKVSITSPVAQTTRNRLRAILTTQNAQLVFVD 67

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFI 325
           T GI +   ++ +  ++     +   D ILL+ E              +   +    + +
Sbjct: 68  TPGIHKPHHLLGQRLVQSARRSIGEVDTILLIFEGCHPPGKGDYFVVNLLREEERPVLIV 127

Query: 326 GTKSDL------------YSTYTEEYD---HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             K DL            Y     E D      S+  G GLE LI +I   L    +  P
Sbjct: 128 LNKWDLLPLEKSKQRENEYKDLFRELDWPIFCCSATHGTGLEGLIEEISRNLPIGPRLFP 187

Query: 371 FSIPSHKRHLYHLSQTVR 388
             + S +       + +R
Sbjct: 188 PEMVSDQSEQTIFRELIR 205


>gi|237737545|ref|ZP_04568026.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419425|gb|EEO34472.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817]
          Length = 298

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 23/175 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+         DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFNDNQYIFIDTPGIHKAK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDL- 331
            ++ +         +++ D+IL + + + +         +++   K    I +  K D  
Sbjct: 66  HLLGEYMTNSAIRVLKDVDVILFVLDGSQEISTGDQFVMEKVKEAKRTPRILVVNKIDKL 125

Query: 332 -----------YSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                            E+D    IS     GL +L+ KI   L    K  P  +
Sbjct: 126 NDEQLKAKRLEIEEKLGEFDGIVEISGQYAIGLPKLLEKIDPFLEEGIKYYPDDM 180


>gi|315185423|gb|EFU19195.1| GTP-binding protein Era [Spirochaeta thermophila DSM 6578]
          Length = 290

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 20/197 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
             I+G  ++GKS+L N L  + VAI + +P TTR+ +   +  E   +   DT G   ++
Sbjct: 6   CAIVGRPSSGKSTLLNTLCGRKVAITSPVPQTTRNRIRGIVTEERGQIVFIDTPGYHHSE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
                   ++    ++  D IL L +             E+        +    K D+  
Sbjct: 66  KKFNLFLKEQVIEALKEVDEILYLVDSTRSVGEEEHELIELVKQAGKPVVIALNKIDIPE 125

Query: 334 TYTE------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            + E                 IS++TGEGLEEL  ++        +  P    + +   +
Sbjct: 126 HHAEGMVPLLKAHFPSAPIVKISAYTGEGLEELKARLFEAAEEGPQLYPEEFYTDQEPRF 185

Query: 382 HLSQTVRYLEMASLNEK 398
            +++ +R   +    E+
Sbjct: 186 RIAEIIREKAIHQTREE 202


>gi|167039341|ref|YP_001662326.1| small GTP-binding protein [Thermoanaerobacter sp. X514]
 gi|256752341|ref|ZP_05493202.1| small GTP-binding protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913981|ref|ZP_07131298.1| small GTP-binding protein [Thermoanaerobacter sp. X561]
 gi|307725336|ref|YP_003905087.1| small GTP-binding protein [Thermoanaerobacter sp. X513]
 gi|166853581|gb|ABY91990.1| small GTP-binding protein [Thermoanaerobacter sp. X514]
 gi|256748752|gb|EEU61795.1| small GTP-binding protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890666|gb|EFK85811.1| small GTP-binding protein [Thermoanaerobacter sp. X561]
 gi|307582397|gb|ADN55796.1| small GTP-binding protein [Thermoanaerobacter sp. X513]
          Length = 408

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 20/176 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           I +   I I G  NAGKSSL NAL  ++VA+V+D+ GTT D ++  +++     V I DT
Sbjct: 6   ISSRLHIAIFGRRNAGKSSLINALTNQEVALVSDVAGTTTDPVSKAMEILPIGPVVIIDT 65

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIG 326
           AG+ +T ++ E   +K+T+  +   DL +L+ +          +  +I   KNI  + + 
Sbjct: 66  AGLDDTGELGELR-VKKTYEVLNRTDLAILVIDGTIGLSEFEENVLKIIRDKNIPVVGVI 124

Query: 327 TKSDLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
            K DL     E+               S+    G+E L   +        ++L   
Sbjct: 125 NKKDLSQYSEEDKRKWEEKLKLELIEVSALKKHGIEALKMMLIKKAPYDDRELSIV 180


>gi|301300995|ref|ZP_07207158.1| GTP-binding protein Era [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851411|gb|EFK79132.1| GTP-binding protein Era [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 300

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 67/188 (35%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 10  VAILGRPNVGKSTFLNRVVGQKIAIMSDKAQTTRNKIQGIYTEDDAQIVFIDTPGIHKPH 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSD--- 330
             +    ++     +   D +L +     K+       I   KN       +  K D   
Sbjct: 70  SRLGDFMVESALSTLNEVDAVLFMVNATQKRGRGDDFIIERLKNVKKPIYLVINKIDQIH 129

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y    D+     IS+  G    ELI  + + L    +  P    +     
Sbjct: 130 PDKLLQIMDDYRNTLDYAEVFPISALEGNNCPELIESLVNTLPEGPQYYPADQITDHPER 189

Query: 381 YHLSQTVR 388
           +   + +R
Sbjct: 190 FIAGELIR 197


>gi|238853405|ref|ZP_04643784.1| GTP-binding protein Era [Lactobacillus gasseri 202-4]
 gi|238833977|gb|EEQ26235.1| GTP-binding protein Era [Lactobacillus gasseri 202-4]
          Length = 303

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 21/208 (10%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              +  ++G+ + ++G  N GKS+L N L  + VAI++  P TTR+ ++     +   + 
Sbjct: 3   DEKKDYKSGF-VALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIV 61

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------KEISFPKNIDFI 323
             DT GI +  + ++    K ++  ++  D++L + E            E+         
Sbjct: 62  FIDTPGIHKPKNKLDDFMDKSSYSALDEVDVVLFMVEPEPAGKGDQYIAELLKKIKKPVF 121

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K D         +  +Y    D      IS+  G  + ELI  I   L    +   
Sbjct: 122 LVINKIDKVHPDKLLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAKNLPEGPQFYD 181

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               + +   + +++ +R   +   +E+
Sbjct: 182 ADQLTDRPEYFIVAELIREQVLKLTHEE 209


>gi|161507651|ref|YP_001577605.1| GTP-binding protein Era [Lactobacillus helveticus DPC 4571]
 gi|254783658|sp|A8YVM7|ERA_LACH4 RecName: Full=GTPase Era
 gi|160348640|gb|ABX27314.1| GTP-binding protein [Lactobacillus helveticus DPC 4571]
          Length = 301

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 81/195 (41%), Gaps = 21/195 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ + +LG  N GKS+L N L  + VAI ++ P TTR+ ++     +   V   D
Sbjct: 4   KEFKSGF-VALLGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKMQVVFVD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIG 326
           T GI +    ++    K +   + + DL+L + E             +     +    + 
Sbjct: 63  TPGIFKPHSKLDDYMDKASLSSLNDVDLVLFMVEPEEIGKGDQYIANLLKEVKVPVFLVI 122

Query: 327 TKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         +  +Y +    +    IS+  G G+E+L+N I   L    +      
Sbjct: 123 NKVDQIHPNKLLLIMDSYHKLEGFKEILPISATQGIGIEDLLNTINKYLPEGPQYYGADQ 182

Query: 374 PSHKRHLYHLSQTVR 388
            + +   + +++ +R
Sbjct: 183 ITDRPEYFVVAELIR 197


>gi|325290811|ref|YP_004266992.1| iron-only hydrogenase maturation protein HydF [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966212|gb|ADY56991.1| iron-only hydrogenase maturation protein HydF [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 417

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 91/244 (37%), Gaps = 46/244 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  NAGKSSL NAL  +D+A+V+D+PGTT D +   +++     V + DTAG+ 
Sbjct: 10  LHISLFGRRNAGKSSLINALTNQDIALVSDVPGTTTDPVYKAMEILPIGPVMLIDTAGLD 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD 330
           +   + E   ++++   ++  D+ LL+ +  +          ++   +NI  + I  K D
Sbjct: 70  DVGSLGELR-VRKSRQVLDKTDVTLLVVDSGTGFGDFEKNIYDLCVERNIPVLIIFNKID 128

Query: 331 LYSTYTEEY----------------------DHLISSFTGEGLEELINKIKSI------- 361
           L +   ++                          +SS T EG+ +L   +  I       
Sbjct: 129 LINEDQKKALQNNLEQTYGLSLQNPQTSAPQALFVSSVTKEGILQLKQNLSKIKPTEWLA 188

Query: 362 --LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE-----NLRLASV 414
             +     +    I           Q    L            D +        L+ A  
Sbjct: 189 PAIVGDLVEPGSMIVLVVPIDMAAPQGRLILPQVQTIRDILDHDCLTVVCKEYELKKALD 248

Query: 415 SLGK 418
           SL +
Sbjct: 249 SLKE 252


>gi|90961872|ref|YP_535788.1| GTP-binding protein Era [Lactobacillus salivarius UCC118]
 gi|122449031|sp|Q1WTU6|ERA_LACS1 RecName: Full=GTPase Era
 gi|90821066|gb|ABD99705.1| GTP-binding protein [Lactobacillus salivarius UCC118]
 gi|300214599|gb|ADJ79015.1| Like GTP-binding protein [Lactobacillus salivarius CECT 5713]
          Length = 300

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 67/188 (35%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 10  VAILGRPNVGKSTFLNRVVGQKIAIMSDKAQTTRNKIQGIYTEDDAQIVFIDTPGIHKPH 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSD--- 330
             +    ++     +   D +L +     K+       I   KN       +  K D   
Sbjct: 70  SRLGDFMVESALSTLNEVDAVLFMVNATQKRGRGDDFIIERLKNVKKPIYLVINKIDQIH 129

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y    D+     IS+  G    ELI  + + L    +  P    +     
Sbjct: 130 PDKLLQIMDDYRNTLDYAEVFPISALEGNNCPELIESLVNTLPEGPQYYPADQITDHPER 189

Query: 381 YHLSQTVR 388
           +   + +R
Sbjct: 190 FIAGELIR 197


>gi|269958675|ref|YP_003328462.1| GTP-binding protein EngA [Anaplasma centrale str. Israel]
 gi|269848504|gb|ACZ49148.1| GTP-binding protein EngA [Anaplasma centrale str. Israel]
          Length = 438

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 97/250 (38%), Gaps = 31/250 (12%)

Query: 173 EADLDFSEEEDV--QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            A +D  E  D     + S E    +  L   +S         +       I I+G  N 
Sbjct: 125 CALIDDMEYLDFLGPVYISAEHNLGMPDLYEVMSPLFEGEHRQKTREKAITISIIGQPNV 184

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKE 287
           GKS+  N++  +   I     GTTRD ++ +   +G  + ++DTAGIR+   +   +EK 
Sbjct: 185 GKSTFMNSILGEKRVITDGTAGTTRDSISAEYCYKGVRLLLTDTAGIRKRAKVTENMEKL 244

Query: 288 GIKRTFLEVENADLILLLKE----INSKK----EISFPKNIDFIFIGTKSDLYSTYTEEY 339
            IK     +  + +++L+ +    IN +     + +  +    + +  KSDL      E 
Sbjct: 245 SIKSATDAISRSSVVVLMVDFTLGINQQDLFIADTAIREGKGIVVVLNKSDLIDDKAVEE 304

Query: 340 DH-----------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           +                   IS+  G G  +++++   +  +   ++  +  +   ++  
Sbjct: 305 EILQAIRRHSRVDFDVPIMKISALRGTGCSKVLDRAIELHKSASSRISTAQLNRWLNV-A 363

Query: 383 LSQTVRYLEM 392
           L     +L+ 
Sbjct: 364 LEHHAPHLQN 373



 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS++FN L +   AIV+++   TRD      +  G      DT G+   
Sbjct: 3   KVAIVGLPNVGKSTIFNRLVRSKSAIVSNVAHVTRDRKEGVANFCGLQFVAIDTGGVG-A 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK------NIDFIFIGTKSD 330
              ++    ++  L +E  D++L + +       ++  F K      +   I +  K +
Sbjct: 62  GTGMQALVTEQVELALECTDVVLFVVDAKKGTDAEDTDFAKWLRKRTSKPVILVVNKCE 120


>gi|317490529|ref|ZP_07949007.1| GTP-binding protein Era [Eggerthella sp. 1_3_56FAA]
 gi|316910380|gb|EFV32011.1| GTP-binding protein Era [Eggerthella sp. 1_3_56FAA]
          Length = 307

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 82/187 (43%), Gaps = 24/187 (12%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G+  ++G+ + ++G  NAGKS+L NA+  K +AI ++   TTR      L  EG+ + + 
Sbjct: 9   GDSFKSGF-VTLVGRPNAGKSTLINAIMGKKIAITSNTAQTTRHRFRAALTREGFQLILV 67

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFI 323
           DT G+ +  D + +E        +E+ D++  L + +            ++   ++    
Sbjct: 68  DTPGLHKPHDALGEELNTSALKALEDVDVVAFLVDASKPVGTGDEWVAAQLKRARSKKI- 126

Query: 324 FIGTKSDLYSTYTEEYDHLI-------------SSFTGEGLEELINKIKSILSNKFKKLP 370
            + +K DL      +                  SS TGE +++ ++++ ++L       P
Sbjct: 127 LVLSKIDLVDGEQLDRQRFAAAQLGDWDAVVELSSQTGEHVQDFVDEVVALLPPGPAWFP 186

Query: 371 FSIPSHK 377
             + + +
Sbjct: 187 TDMETDQ 193


>gi|330993373|ref|ZP_08317308.1| GTP-binding protein era-like protein [Gluconacetobacter sp. SXCC-1]
 gi|329759403|gb|EGG75912.1| GTP-binding protein era-like protein [Gluconacetobacter sp. SXCC-1]
          Length = 305

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 86/203 (42%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  NAGKS+L N +A   ++IV+    TTR  +   L   G  + + DT G
Sbjct: 12  RCGF-VAIVGAPNAGKSTLLNRMAGTKLSIVSPKAQTTRFRVLGILMRHGAQILLVDTPG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTK 328
           I +    +++  +   +   ++AD+ LL+ +  +               +      +  K
Sbjct: 71  IFQPRRRLDRAMVAAAWTGSDDADITLLIVDARAGMTDALRAIAARLAEQKRRLWLVLNK 130

Query: 329 SDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +DL              +    E+  ++S+ +GEG+++L++++ + L       P    +
Sbjct: 131 TDLVKRDTLLPLTAELSAILPVEHVFMVSARSGEGVDDLLDRLAAALPAGPYLYPEDDLT 190

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++ VR       +E+
Sbjct: 191 DLPDRLLAAELVREQIFLQTHEE 213


>gi|291458560|ref|ZP_06597950.1| GTP-binding protein Era [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291419093|gb|EFE92812.1| GTP-binding protein Era [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 313

 Score = 95.3 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 82/221 (37%), Gaps = 24/221 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E IR+G+ + + G  N GKS+L NA+  + +AI +  P TTR  +    D E   +   D
Sbjct: 15  EGIRSGF-VGLAGRPNVGKSTLMNAVIGQKIAITSKRPQTTRKRIMGVYDDERGQIIFHD 73

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
           T GI +  + + +         + + DL+L L E              +        I +
Sbjct: 74  TPGIHKARNRLSEFMEHVAEKALGDVDLVLWLVEPGELPGEAEEYIAGLLRECKKKTILV 133

Query: 326 GTKSDLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             K D+     E                   IS++  + +EEL + I   L    +    
Sbjct: 134 VNKIDILKNEEELTQLTEAYRNLLELTELIPISAYKHKNIEELKSAIFRNLPPGPRYYDE 193

Query: 372 SIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENLRL 411
              +        ++ +R   +  L  E   G+ ++ E +R 
Sbjct: 194 DTVTDMPLRDIAAELIREQTLYKLDQEVPHGIAVLIEEMRQ 234


>gi|322379379|ref|ZP_08053750.1| GTP-binding protein EngA [Helicobacter suis HS1]
 gi|321148197|gb|EFX42726.1| GTP-binding protein EngA [Helicobacter suis HS1]
          Length = 448

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 25/178 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  N GKSSL NAL +++ A+V++IPGTT D +   +      +   DTAG+R+
Sbjct: 187 IQVGIIGRVNVGKSSLLNALIEQERALVSEIPGTTIDPVDQSISHHNQEICFVDTAGLRQ 246

Query: 280 TDDIV--EKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKS 329
              +   EK  + RT   +E + + LL+ + ++       K        N+  I +  K 
Sbjct: 247 RSKVEGLEKFALDRTRKVLEKSHIALLVLDASTPFVELDEKIASLAGEYNLGVIVVFNKW 306

Query: 330 DL----YSTYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           D+    + T  E++ H             S+ +   + ++ +KI  + +    ++  S
Sbjct: 307 DIKHAGFETIIEDFKHKFKFLQYAPLLTTSAISKRHILQIKDKILEVYAYFSMRISTS 364



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 69/174 (39%), Gaps = 18/174 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI ILG  N GKSSLFN L +   AI  DI GTTRD+      L G+ V++ DT G  +
Sbjct: 12  LKIAILGKPNVGKSSLFNCLLRSRSAITFDIAGTTRDIKKQTFLLAGHGVELWDTGGF-D 70

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDL 331
            D I  ++        ++ +DLIL + +     +    K              +  K D 
Sbjct: 71  ADSIFGEQIQSFNLEAIKASDLILYVVDGKIPPQDEDKKYLLEIQKQKRACFLLVNKLDN 130

Query: 332 YSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                  Y+           IS    +GL  L N I      K  + P  + ++
Sbjct: 131 QVEELAGYEFASLGIKEMFFISVSHNKGLNTLTNAILKYFHLKPLESPIHLSTN 184


>gi|328957481|ref|YP_004374867.1| GTP-binding protein Era [Carnobacterium sp. 17-4]
 gi|328673805|gb|AEB29851.1| GTP-binding protein Era [Carnobacterium sp. 17-4]
          Length = 302

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 68/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +          +   DT GI +  
Sbjct: 12  VSIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTTPESQIVFIDTPGIHKPK 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    +   F      D+IL +  I  K+        E           +  K D   
Sbjct: 72  HRLGDFMVNSAFSAFREVDVILFMVNITEKRGPGDNFIMEKLKTVKSPVFLVLNKIDKIH 131

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y    D      IS+  G  ++ L+ +I   L    +  P    +     
Sbjct: 132 PDQLLPIIEDYRSLVDFAQVIPISASEGNNVDTLLEEITKYLPTGPQFYPEDQVTDHPEY 191

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 192 FIVSELIR 199


>gi|323141988|ref|ZP_08076839.1| ribosome biogenesis GTPase Era [Phascolarctobacterium sp. YIT
           12067]
 gi|322413520|gb|EFY04388.1| ribosome biogenesis GTPase Era [Phascolarctobacterium sp. YIT
           12067]
          Length = 287

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 71/187 (37%), Gaps = 22/187 (11%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKS+L N+L  + +AI++D P TTR+ +   ++ +   +   DT GI +    
Sbjct: 1   MVGRPNVGKSTLTNSLIGEKIAIMSDRPQTTRNKIMCIMNTDNAQIMFLDTPGIHKPQHK 60

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYST- 334
           + +  ++     ++  D++L + +   K+         +        I +  K D  +  
Sbjct: 61  LGEYMVRTAESTLQEVDVVLFVVDATEKRGAGEDYILNLLQKVKTPVILVVNKIDKLADK 120

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                        Y       +S+        L+ +I   L       P  + + +    
Sbjct: 121 QKLFQIMEGYNKLYKFAAIVPVSALNDSEFPGLVQEITKHLPEGPAYFPEDMITDQPERV 180

Query: 382 HLSQTVR 388
             ++ +R
Sbjct: 181 IAAEMIR 187


>gi|283955141|ref|ZP_06372643.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 414]
 gi|283793354|gb|EFC32121.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 414]
          Length = 460

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 101/240 (42%), Gaps = 29/240 (12%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL---GEIIRN 218
           + ++ ++       LD   +   +    + ++ D      D   H  +GK     E+ +N
Sbjct: 135 VKEIFNLSVTHNVGLDELYDWLEKFLHEEFLIPDEEENLEDFLEHYEEGKEFQFKEVDQN 194

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++  DTAGIR
Sbjct: 195 HIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESIVHKDKVIEFVDTAGIR 254

Query: 279 ETDDIV--EKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNI-DFIFIGTK 328
           +   I   E+  + RT   + ++ + LL+ +        + +      K+    I +  K
Sbjct: 255 KRGKIQGLERFALNRTEKILSHSQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNK 314

Query: 329 S----------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                            D +          +S+  G+ +  L++KI  I  N  +K+  S
Sbjct: 315 WDKSKMDFDKTVKELRLDRFKFLAYAPVISVSALNGKRVHVLLDKILQIFENFTQKIQTS 374



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD    ++ +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTEIFIHSKKAILIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           ++  K   K T   V+ +D+IL L +     +    +              +  K D   
Sbjct: 64  ELF-KNVKKNTLKVVKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDNKK 122

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKF 366
                ++            S     GL+EL + ++  L  +F
Sbjct: 123 DEERAWEFANFGVKEIFNLSVTHNVGLDELYDWLEKFLHEEF 164


>gi|154484522|ref|ZP_02026970.1| hypothetical protein EUBVEN_02236 [Eubacterium ventriosum ATCC
           27560]
 gi|149734370|gb|EDM50287.1| hypothetical protein EUBVEN_02236 [Eubacterium ventriosum ATCC
           27560]
          Length = 300

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 87/206 (42%), Gaps = 22/206 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + ++G  N GKS+L N +  + +AI +  P TTR+ +      +   +   D
Sbjct: 3   EKFKSGF-VALIGRPNVGKSTLMNQIIGQKIAITSKKPQTTRNKIQTVYTCDEGQIVFLD 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPK---NIDFIFI 325
           T GI +  + + +  +      ++  DLIL L E ++     ++ I+      ++  I +
Sbjct: 62  TPGIHKAKNKLGEYMVNVAEKTLKEVDLILWLVEPDTFIGAGEQHIAEQLKGIDVPVILV 121

Query: 326 GTKSD---------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K+D             Y + YD       S+  G+  + ++ +I   L          
Sbjct: 122 INKTDTVKREEILTFIDAYRKIYDFNEIIPASALRGQNTDTVVEEIFKYLPEGPMYYDED 181

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEK 398
             + +     +++ +R   + +LNE+
Sbjct: 182 TVTDQPMRQIVAELIREKALHALNEE 207


>gi|167036672|ref|YP_001664250.1| small GTP-binding protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115099|ref|YP_004185258.1| small GTP-binding protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855506|gb|ABY93914.1| small GTP-binding protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928190|gb|ADV78875.1| small GTP-binding protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 408

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 16/170 (9%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           I +   I I G  NAGKSSL NAL  ++VA+V+D+ GTT D ++  +++     V I DT
Sbjct: 6   ISSRLHIAIFGRRNAGKSSLINALTNQEVALVSDVAGTTTDPVSKAMEILPIGPVVIIDT 65

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIG 326
           AG+ +T ++ E   +K+T+  +   DL +L+ +          +  +I   KNI  + + 
Sbjct: 66  AGLDDTGELGELR-VKKTYEVLNRTDLAILVIDGTIGLSEFEENVLKIIRDKNIPVVGVI 124

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLE------ELINKIKSILSNKFKKLP 370
            K DL     E+          E +E        I  +K +L  K     
Sbjct: 125 NKKDLSQYSEEDKRKWEEKLKLELIEVSALKKHGIEALKMMLIKKAPYDD 174


>gi|86151224|ref|ZP_01069439.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86153811|ref|ZP_01072014.1| GTP-binding protein engA [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612239|ref|YP_001000097.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005055|ref|ZP_02270813.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|315123946|ref|YP_004065950.1| GTPase family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|166224324|sp|A1VYA6|DER_CAMJJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|85841571|gb|EAQ58818.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85842772|gb|EAQ59984.1| GTP-binding protein engA [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87250505|gb|EAQ73463.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|315017668|gb|ADT65761.1| GTPase family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 460

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 29/240 (12%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL---GEIIRN 218
           + ++ ++       LD   E   +    + ++ D      D   H  +GK     E+ +N
Sbjct: 135 VKEIFNLSVTHNVGLDELYEWLEKFLHEEFLIPDEEENLEDFLEHYEEGKEFQFKEVDQN 194

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++  DTAGIR
Sbjct: 195 HIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIR 254

Query: 279 ETDDIV--EKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNI-DFIFIGTK 328
           +   I   E+  + RT   + ++ + LL+ +        + +      K+    I +  K
Sbjct: 255 KRGKIQGLERFALNRTEKILSHSQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNK 314

Query: 329 S----------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                            D +          +S+ +G+ +  L++KI  I  N  +K+  S
Sbjct: 315 WDKSEMDFDKTVKELRLDRFKFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTS 374



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD     + +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           ++  K   K T    + +D+IL L +     +    +              +  K D   
Sbjct: 64  ELF-KNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVVNKVDNKK 122

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKF 366
                ++            S     GL+EL   ++  L  +F
Sbjct: 123 DEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFLHEEF 164


>gi|325956928|ref|YP_004292340.1| GTPase Era [Lactobacillus acidophilus 30SC]
 gi|325333493|gb|ADZ07401.1| GTPase Era [Lactobacillus acidophilus 30SC]
          Length = 301

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 81/195 (41%), Gaps = 21/195 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ + ++G  N GKS+L N L  + VAI ++ P TTR+ ++     +   +   D
Sbjct: 4   KKFKSGF-VALIGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDDMQIVFVD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIG 326
           T GI +    ++    K +   + + DL+L + E            ++     +    + 
Sbjct: 63  TPGIFKPHSKLDDYMDKASLSSLNDVDLVLFMVEPEKIGKGDQYIADLLKEVKVPVFLVI 122

Query: 327 TKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         +  +Y +    +    IS+  G G+E+L+  +   L    +      
Sbjct: 123 NKVDQIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLATLNKYLPEGPQYYSADQ 182

Query: 374 PSHKRHLYHLSQTVR 388
            + +   + +++ +R
Sbjct: 183 ITDRPEYFVVAELIR 197


>gi|319784770|ref|YP_004144246.1| ribosome-associated GTPase EngA [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170658|gb|ADV14196.1| ribosome-associated GTPase EngA [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 477

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  N GKS+LFN L  + +A+V D PG TRD       L      + DTAG  +
Sbjct: 3   FKVAIIGRPNVGKSTLFNRLVGRKLALVDDTPGVTRDRRVHAAKLYDLHFDVIDTAGFED 62

Query: 280 TDDIVE-KEGIKRTFLEVENADLILL--------LKEINSKKEISFPKNIDFIFIGTKSD 330
                       +T + +  ADLI          L +  +  EI        + +  K++
Sbjct: 63  AGASTLPGRMRAQTEIAIREADLIFFTIDAKSGLLPDDRTFAEIVRKSGKPVVLVANKAE 122

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
                    +            S+  G+G+ +L + +   L
Sbjct: 123 AKGAQGGMLEAWELGLGEPIPVSAEHGQGMPDLRDAVIGAL 163



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 11/129 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I ++G  NAGKS+L NAL  ++  +     G TRD +++D D  G  +K+ DTAG+R 
Sbjct: 206 MRIAVVGRPNAGKSTLINALIGEERLLTGPEAGITRDSISVDWDWHGRRLKLFDTAGMRR 265

Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              I EK     ++     +  A++++++ +     E        +   +    +    K
Sbjct: 266 KARIHEKLEVMSVQDGLRAIRFAEIVIIVLDATIPFEKQDLQIADLIIREGRAPVIAFNK 325

Query: 329 SDLYSTYTE 337
            DL     E
Sbjct: 326 WDLIDHPQE 334


>gi|293571622|ref|ZP_06682643.1| GTP-binding protein Era [Enterococcus faecium E980]
 gi|291608292|gb|EFF37593.1| GTP-binding protein Era [Enterococcus faecium E980]
          Length = 299

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +          +   DT GI +  
Sbjct: 9   VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGVYTTPEAQLIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNI--DFIFIGTKSD--- 330
             +    ++  +  ++  D +L +   + K+       I   KN+      I  K D   
Sbjct: 69  HRLGDFMVEAAYSALKEVDAVLFMISADQKRGRGDDFIIERLKNVHSPVYLIINKIDKIH 128

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y+ +        IS+  G  +E L++ + S +    +  P    +     
Sbjct: 129 PDELLGIIEDYSTQMPFAQVIPISATEGNNVERLMDVLVSEMPEGPQYFPDDQVTDHPEY 188

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 189 FIVSELIR 196


>gi|288918466|ref|ZP_06412817.1| small GTP-binding protein [Frankia sp. EUN1f]
 gi|288350106|gb|EFC84332.1| small GTP-binding protein [Frankia sp. EUN1f]
          Length = 466

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 101/294 (34%), Gaps = 30/294 (10%)

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTH 167
           +    + R  E  +  L  A+ +  +I +         ++  +            +K+  
Sbjct: 90  DARGLAARVAEQARAALDTADGVLFVIDTTVGATDADEAVARVLHRSGRPVILAANKVDD 149

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN--GYKIVIL 225
            R+  +A   +S         S         L + + + + +      +      ++ ++
Sbjct: 150 ARTEADAAALWSLGLGEPYPVSALHGRGSGDLLDAVLAVLPEAPRERFVEEDGPRRVALI 209

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDD 282
           G  N GKSSL N +   + ++V D+ GTTRD +   + + G      DTAG+R   +   
Sbjct: 210 GRPNVGKSSLLNKIVGAERSLVHDVAGTTRDPVDELVTVGGETWMFIDTAGLRRRVKEAS 269

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYST 334
             E     RT   +E A++ ++L   +        +            +    K DL  T
Sbjct: 270 GAEYYSSLRTASALEAAEVAIVLLAADEPITEQDQRIISMVTEAGRALVLAFNKWDLLDT 329

Query: 335 YTE----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                                   IS+ TG   ++L   +++ L +   ++P  
Sbjct: 330 ERRLDLEQEIVRDLGRVAWAPRVNISARTGRATDKLAPALRTSLESWGTRIPTG 383



 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 17/164 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD +  D    G    + DT G     
Sbjct: 32  LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVAYDAVWNGRRFTVVDTGGWEPDA 91

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             +     ++    ++ AD +L + +          +   +        I    K D   
Sbjct: 92  RGLAARVAEQARAALDTADGVLFVIDTTVGATDADEAVARVLHRSGRPVILAANKVDDAR 151

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKK 368
           T  +            + +S+  G G  +L++ + ++L    ++
Sbjct: 152 TEADAAALWSLGLGEPYPVSALHGRGSGDLLDAVLAVLPEAPRE 195


>gi|257879930|ref|ZP_05659583.1| GTP-binding protein Era [Enterococcus faecium 1,230,933]
 gi|257814158|gb|EEV42916.1| GTP-binding protein Era [Enterococcus faecium 1,230,933]
          Length = 299

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +          +   DT GI +  
Sbjct: 9   VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGVYTTPEAQLIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNI--DFIFIGTKSD--- 330
             +    ++  +  ++  D +L +   + K+       I   KN+      I  K D   
Sbjct: 69  HRLGDFMVEAAYTALKEVDAVLFMISADQKRGRGDDFIIERLKNVHSPVYLIINKIDKIH 128

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y+ +        IS+  G  +E L++ + S +    +  P    +     
Sbjct: 129 PDELLGIIEDYSTQMPFAQVIPISATEGNNVERLMDVLVSEMPEGPQYFPDDQVTDHPEY 188

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 189 FIVSELIR 196


>gi|256372122|ref|YP_003109946.1| small GTP-binding protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008706|gb|ACU54273.1| small GTP-binding protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 429

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 27/178 (15%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI-- 283
           G  N GKSSLFN L  +  AIV D PGTT D L   ++ +   ++  DTAG+R       
Sbjct: 183 GRPNVGKSSLFNRLVGEPRAIVYDQPGTTVDTLDTVVETDEGRIRFVDTAGLRRRSRYES 242

Query: 284 -VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST 334
             E   + RT   ++ AD+ LL+ +             E         + +  K D    
Sbjct: 243 GTEYFSMVRTLAAIDAADVSLLVIDATEGVTGWDQRLVERIDAAGSPVVVVLNKWDQLDA 302

Query: 335 YTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             ++                    IS+ TG G+  ++  I +  ++  +++P    + 
Sbjct: 303 EAKDRIERDVEDRLAFVTGLDPVRISALTGRGVHRVLPAIFAARADYERRVPTGQLNR 360



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 17/159 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++VI+G  N GKSSLFN +  +  A+V + P  TRD     +D EG  + I DT G    
Sbjct: 3   RVVIVGRPNVGKSSLFNRVVGRREAVVEERPKVTRDAKEATIDWEGAPLAIVDTGGYLAG 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY 332
            D ++          +  ADL L++ +     ++++ +  +      +  I +  K D  
Sbjct: 63  ADGLDAAVSAAVEAALRRADLALVVVDARVPPTEEDAAIARVVRRAKVPSILVANKVDSP 122

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSIL 362
                 ++H          +S+  G G+ EL++ +   L
Sbjct: 123 GHEPAIWEHLALGVGEPVPVSAMHGRGVFELLDLVARRL 161


>gi|172056862|ref|YP_001813322.1| GTP-binding protein Era [Exiguobacterium sibiricum 255-15]
 gi|171989383|gb|ACB60305.1| GTP-binding protein Era [Exiguobacterium sibiricum 255-15]
          Length = 302

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 24/196 (12%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           + G+K   + I+G  N GKS+  N +  + +AI++D P TTR+ +      +       D
Sbjct: 3   KEGFKSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDVQTIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNID--FIFI 325
           T GI +    +    +K     +   D IL +  +   K       I   K++D   I +
Sbjct: 63  TPGIHKPKHKLGDFMMKVATNALREVDAILFMINVTEPKGKGDEFIIEKLKDLDTPIILV 122

Query: 326 GTKSDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL           +Y  E +      IS+  G  +E L+ +I  IL       P  
Sbjct: 123 MNKVDLIHPNDIPPIIESYQNELNFAAVVPISALQGNNVEPLLQEISKILPEGPMYYPAD 182

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +S+ +R
Sbjct: 183 QITDHPERFIISEMIR 198


>gi|257791391|ref|YP_003181997.1| GTP-binding protein Era [Eggerthella lenta DSM 2243]
 gi|325831362|ref|ZP_08164616.1| ribosome biogenesis GTPase Era [Eggerthella sp. HGA1]
 gi|257475288|gb|ACV55608.1| GTP-binding protein Era [Eggerthella lenta DSM 2243]
 gi|325486616|gb|EGC89064.1| ribosome biogenesis GTPase Era [Eggerthella sp. HGA1]
          Length = 307

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 82/187 (43%), Gaps = 24/187 (12%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G+  ++G+ + ++G  NAGKS+L NA+  K +AI ++   TTR      L  EG+ + + 
Sbjct: 9   GDSFKSGF-VTLVGRPNAGKSTLINAIMGKKIAITSNTAQTTRHRFRAVLTREGFQLILV 67

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFI 323
           DT G+ +  D + +E        +E+ D++  L + +            ++   ++    
Sbjct: 68  DTPGLHKPHDALGEELNTSALKALEDVDVVAFLVDASKPVGTGDEWVAAQLKRARSKKI- 126

Query: 324 FIGTKSDLYSTYTEEYDHLI-------------SSFTGEGLEELINKIKSILSNKFKKLP 370
            + +K DL      +                  SS TGE +++ ++++ ++L       P
Sbjct: 127 LVLSKIDLVDGEQLDRQRFAAAQLGDWDAVVELSSQTGEHVQDFVDEVVALLPPGPAWFP 186

Query: 371 FSIPSHK 377
             + + +
Sbjct: 187 TDMETDQ 193


>gi|229497021|ref|ZP_04390726.1| GTP-binding protein Era [Porphyromonas endodontalis ATCC 35406]
 gi|229316123|gb|EEN82051.1| GTP-binding protein Era [Porphyromonas endodontalis ATCC 35406]
          Length = 307

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 84/199 (42%), Gaps = 21/199 (10%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +  +  R+G+ + I+G+ N GKS+L N L  + ++I+T    TTR  +   ++     V
Sbjct: 10  AEHPQNYRSGF-VNIVGNPNVGKSTLLNYLVGERLSIITSKAQTTRHRILGIVNTPDMQV 68

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-------PKNIDF 322
             SDT G+ + +  +++     +   + +AD+++ + ++  ++E +              
Sbjct: 69  VYSDTPGVLKPNYKLQERMRAFSDQALTDADVLIYVTDVVERREKNLDFLQAVGRLECPI 128

Query: 323 IFIGTKSDL-----YSTYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           + +  K DL          EE+           IS+     ++ L  +I+ +L       
Sbjct: 129 LLVINKIDLTDQKHLEELVEEWHTLLPKAEILPISATNRFNVQPLKKRIEELLPIAPPYF 188

Query: 370 PFSIPSHKRHLYHLSQTVR 388
                + +   + +S+ +R
Sbjct: 189 EQDALTDRPARFFVSEIIR 207


>gi|110679080|ref|YP_682087.1| GTP-binding protein EngA [Roseobacter denitrificans OCh 114]
 gi|123065686|sp|Q169E2|DER_ROSDO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|109455196|gb|ABG31401.1| GTP-binding protein [Roseobacter denitrificans OCh 114]
          Length = 492

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ +
Sbjct: 3   FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLADLRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEIN 309
            TDD ++    + T   V+ AD+ L + +  
Sbjct: 63  VTDDSLQGRMRRLTERAVDMADICLFMVDAR 93



 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 86/244 (35%), Gaps = 34/244 (13%)

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR-----NGY 220
             + +     L+      +    +          + D++     G +   +R        
Sbjct: 142 IRLSAEHGEGLNDLYTHLMPLADAYAERAAEDAPETDVALDEDSGDMEAALRMPTANKPL 201

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-----YLVKISDTA 275
           ++ ++G  NAGKS+L N +  +D  +     G TRD +++  D  G       ++I DTA
Sbjct: 202 QVAVVGRPNAGKSTLVNQILGEDRLLTGPEAGITRDAISLRTDWVGPEGDVIPMRIFDTA 261

Query: 276 GIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIF 324
           G+R+   +    EK  +      V+ A+++++L +     E        ++  +    + 
Sbjct: 262 GMRKKAKVQEKLEKLSVGDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVVV 321

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHL 383
              K D+                   L EL    + +L         ++ +   R L  L
Sbjct: 322 AVNKWDIEEN------------KQAKLNELRESFERLLPQLRGAPLVTVSARTGRGLDRL 369

Query: 384 SQTV 387
            + V
Sbjct: 370 HKAV 373


>gi|219670281|ref|YP_002460716.1| GTP-binding protein Era [Desulfitobacterium hafniense DCB-2]
 gi|219540541|gb|ACL22280.1| GTP-binding protein Era [Desulfitobacterium hafniense DCB-2]
          Length = 303

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 81/200 (40%), Gaps = 22/200 (11%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +     R+G+ + ++G  NAGKS+L N L  + + I++D P TTR+ +   L  E   V
Sbjct: 4   SEPNRDFRSGF-VTVVGRPNAGKSTLLNQLLGQKILIMSDKPQTTRNKIHCILTEERGQV 62

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPK----NID 321
              DT GI +    + +  +      +   DLIL + +  ++    +E            
Sbjct: 63  VFLDTPGIHKPKHKLGEFMVDSALESLREVDLILYMVDTTAEFGAGEEYILENLKHVKTP 122

Query: 322 FIFIGTKSDLYS-----TYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKK 368
            I +  K DL          ++Y           IS+ TGE  +EL+  I   +      
Sbjct: 123 CILLLNKIDLIEKDKLLKLIKDYSALKDFLAILPISAKTGENKDELLKLIFKEMPQGPMY 182

Query: 369 LPFSIPSHKRHLYHLSQTVR 388
            P    + +   + +++ VR
Sbjct: 183 YPEDEVTDQPERFIMAELVR 202


>gi|332298977|ref|YP_004440899.1| GTP-binding protein engA [Treponema brennaborense DSM 12168]
 gi|332182080|gb|AEE17768.1| GTP-binding protein engA [Treponema brennaborense DSM 12168]
          Length = 497

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 30/219 (13%)

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVA 245
           F S E  + I  L   I  ++   ++         ++ I+G  N GKS+L N L     +
Sbjct: 194 FISAEHGDRIPELSELIVKNLDFSRVERDESAKPIRVAIMGKPNTGKSTLSNKLTHTQAS 253

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLI 302
           IV D  GTTRDV+      +     + DTAGIR    +   +E   + R    +++ D++
Sbjct: 254 IVCDYAGTTRDVVEGSFTYQDTAFLVLDTAGIRRKARVSENIEYYSVNRAIKTLDDTDVV 313

Query: 303 LLLKEINSK--------KEISFPKNIDFIFIGTKSD-----------LYSTYTEEYDHL- 342
            L+ +              +++ +    IF+  K D                   + H+ 
Sbjct: 314 FLMIDAQEGLAEQDKKIAALAYERGRGVIFVLNKWDTQEQDRKTLKRAEENLKIMFGHMS 373

Query: 343 ------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                 +S+  G+G + L+N    +     +K+   + +
Sbjct: 374 YAPVVAVSALEGKGFKNLLNTAIELYGQLTRKIETGVLN 412



 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
                    RN   +VI G  N GKS+LFN + +K  AI    PG TRD +     + G 
Sbjct: 38  PAFDENAEYRNLPLVVIAGRPNVGKSTLFNRILRKRRAITDPTPGVTRDPIEETAFINGC 97

Query: 268 LVKISDTAG--IRETDDIVEKEG----IKRTFLEVEN 298
            V++ DT G  +   +  +E       +++T   ++N
Sbjct: 98  PVRLMDTGGFKLDRENGTMEALMDELVVEQTLRALKN 134


>gi|167749645|ref|ZP_02421772.1| hypothetical protein EUBSIR_00603 [Eubacterium siraeum DSM 15702]
 gi|167657398|gb|EDS01528.1| hypothetical protein EUBSIR_00603 [Eubacterium siraeum DSM 15702]
          Length = 400

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 16/174 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++    GE I  G    I G  NAGKSSL NA+  +++A+V+D  GTT D ++  ++L  
Sbjct: 3   LNSTPSGERIHIG----IFGRRNAGKSSLINAITGQELAVVSDTAGTTTDPVSKAMELLP 58

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFP 317
              V I+DT G+ +  D+     +++++  +   D+ LL+ +         ++  E    
Sbjct: 59  LGPVMITDTPGLDDEGDLGSLR-VRKSYQVLFKTDIALLVVDSTKGISDFDSAILERLKK 117

Query: 318 KNIDFIFIGTKSDLYSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKL 369
           +NI +I +  K  L  T   + D      +  G  + EL   I S L  K +K+
Sbjct: 118 QNIPYIIVMNKCGLLDTVPPKTDGTIYTDALNGTNIYELKELIGSRLDVKDEKM 171


>gi|69247285|ref|ZP_00604286.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecium DO]
 gi|227551968|ref|ZP_03982017.1| GTP-binding protein Era [Enterococcus faecium TX1330]
 gi|257882780|ref|ZP_05662433.1| GTP-binding protein Era [Enterococcus faecium 1,231,502]
 gi|257884088|ref|ZP_05663741.1| GTP-binding protein Era [Enterococcus faecium 1,231,501]
 gi|257886866|ref|ZP_05666519.1| GTP-binding protein Era [Enterococcus faecium 1,141,733]
 gi|257890445|ref|ZP_05670098.1| GTP-binding protein Era [Enterococcus faecium 1,231,410]
 gi|257893051|ref|ZP_05672704.1| GTP-binding protein Era [Enterococcus faecium 1,231,408]
 gi|257895440|ref|ZP_05675093.1| GTP-binding protein Era [Enterococcus faecium Com12]
 gi|257898046|ref|ZP_05677699.1| GTP-binding protein Era [Enterococcus faecium Com15]
 gi|258616603|ref|ZP_05714373.1| GTP-binding protein Era [Enterococcus faecium DO]
 gi|260559560|ref|ZP_05831740.1| GTP-binding protein Era [Enterococcus faecium C68]
 gi|261208624|ref|ZP_05923061.1| GTP-binding protein Era [Enterococcus faecium TC 6]
 gi|289566737|ref|ZP_06447151.1| GTP-binding protein Era [Enterococcus faecium D344SRF]
 gi|293378307|ref|ZP_06624476.1| GTP-binding protein Era [Enterococcus faecium PC4.1]
 gi|293559428|ref|ZP_06675967.1| GTP-binding protein Era [Enterococcus faecium E1162]
 gi|293568654|ref|ZP_06679969.1| GTP-binding protein Era [Enterococcus faecium E1071]
 gi|294616318|ref|ZP_06696111.1| GTP-binding protein Era [Enterococcus faecium E1636]
 gi|294622998|ref|ZP_06701887.1| GTP-binding protein Era [Enterococcus faecium U0317]
 gi|314939540|ref|ZP_07846768.1| GTP-binding protein Era [Enterococcus faecium TX0133a04]
 gi|314942705|ref|ZP_07849531.1| GTP-binding protein Era [Enterococcus faecium TX0133C]
 gi|314948957|ref|ZP_07852323.1| GTP-binding protein Era [Enterococcus faecium TX0082]
 gi|314953304|ref|ZP_07856232.1| GTP-binding protein Era [Enterococcus faecium TX0133A]
 gi|314993384|ref|ZP_07858749.1| GTP-binding protein Era [Enterococcus faecium TX0133B]
 gi|314995734|ref|ZP_07860823.1| GTP-binding protein Era [Enterococcus faecium TX0133a01]
 gi|68194907|gb|EAN09377.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Enterococcus faecium DO]
 gi|227178873|gb|EEI59845.1| GTP-binding protein Era [Enterococcus faecium TX1330]
 gi|257818438|gb|EEV45766.1| GTP-binding protein Era [Enterococcus faecium 1,231,502]
 gi|257819926|gb|EEV47074.1| GTP-binding protein Era [Enterococcus faecium 1,231,501]
 gi|257822920|gb|EEV49852.1| GTP-binding protein Era [Enterococcus faecium 1,141,733]
 gi|257826805|gb|EEV53431.1| GTP-binding protein Era [Enterococcus faecium 1,231,410]
 gi|257829430|gb|EEV56037.1| GTP-binding protein Era [Enterococcus faecium 1,231,408]
 gi|257832005|gb|EEV58426.1| GTP-binding protein Era [Enterococcus faecium Com12]
 gi|257835958|gb|EEV61032.1| GTP-binding protein Era [Enterococcus faecium Com15]
 gi|260074228|gb|EEW62550.1| GTP-binding protein Era [Enterococcus faecium C68]
 gi|260077126|gb|EEW64846.1| GTP-binding protein Era [Enterococcus faecium TC 6]
 gi|289161458|gb|EFD09344.1| GTP-binding protein Era [Enterococcus faecium D344SRF]
 gi|291588614|gb|EFF20447.1| GTP-binding protein Era [Enterococcus faecium E1071]
 gi|291590832|gb|EFF22548.1| GTP-binding protein Era [Enterococcus faecium E1636]
 gi|291597554|gb|EFF28716.1| GTP-binding protein Era [Enterococcus faecium U0317]
 gi|291606642|gb|EFF36037.1| GTP-binding protein Era [Enterococcus faecium E1162]
 gi|292643171|gb|EFF61312.1| GTP-binding protein Era [Enterococcus faecium PC4.1]
 gi|313590006|gb|EFR68851.1| GTP-binding protein Era [Enterococcus faecium TX0133a01]
 gi|313592049|gb|EFR70894.1| GTP-binding protein Era [Enterococcus faecium TX0133B]
 gi|313594647|gb|EFR73492.1| GTP-binding protein Era [Enterococcus faecium TX0133A]
 gi|313598570|gb|EFR77415.1| GTP-binding protein Era [Enterococcus faecium TX0133C]
 gi|313641176|gb|EFS05756.1| GTP-binding protein Era [Enterococcus faecium TX0133a04]
 gi|313644616|gb|EFS09196.1| GTP-binding protein Era [Enterococcus faecium TX0082]
          Length = 299

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +          +   DT GI +  
Sbjct: 9   VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGVYTTPEAQLIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNI--DFIFIGTKSD--- 330
             +    ++  +  ++  D +L +   + K+       I   KN+      I  K D   
Sbjct: 69  HRLGDFMVEAAYSALKEVDAVLFMISADQKRGRGDDFIIERLKNVHSPVYLIINKIDKIH 128

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y+ +        IS+  G  +E L++ + S +    +  P    +     
Sbjct: 129 PDELLGIIEDYSTQMPFAQVIPISATEGNNVERLMDVLVSEMPEGPQYFPDDQVTDHPEY 188

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 189 FIVSELIR 196


>gi|114567081|ref|YP_754235.1| Era, Era/TrmE family GTP-binding protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114338016|gb|ABI68864.1| GTP-binding protein Era, Era/TrmE family [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 293

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G  N GKS+L N +  + +AIV++ P TTR  +      E   V   DT 
Sbjct: 1   MKSGF-VSIVGRPNVGKSTLLNTIIGEKIAIVSEKPQTTRTRIQGIYTCERGQVIFVDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           GI +   ++ +  +K +   +E  D+I  + ++            E      +    +  
Sbjct: 60  GIHKPKHLLGEYMVKVSARSLEEVDIIYYMTDVTRPFGGGESFILEQLKDARVPVFLLVN 119

Query: 328 KSDLYST-----YTEEYDHLI--------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL S      Y + ++           S+  G  L+ LI+K    L       P    
Sbjct: 120 KIDLVSEQEVKDYIQIFNQQRSFSEVVSISAACGTNLQLLIDKTLDALPEGPLYYPEDDL 179

Query: 375 SHKRHLYHLSQTVR 388
           + +     +++ +R
Sbjct: 180 TDQPIYLLIAELIR 193


>gi|56416911|ref|YP_153985.1| GTP-binding protein EngA [Anaplasma marginale str. St. Maries]
 gi|222475278|ref|YP_002563694.1| GTP-binding protein (engA) [Anaplasma marginale str. Florida]
 gi|254995098|ref|ZP_05277288.1| GTP-binding protein EngA [Anaplasma marginale str. Mississippi]
 gi|255003264|ref|ZP_05278228.1| GTP-binding protein EngA [Anaplasma marginale str. Puerto Rico]
 gi|255004391|ref|ZP_05279192.1| GTP-binding protein EngA [Anaplasma marginale str. Virginia]
 gi|56388143|gb|AAV86730.1| GTP-binding protein [Anaplasma marginale str. St. Maries]
 gi|222419415|gb|ACM49438.1| GTP-binding protein (engA) [Anaplasma marginale str. Florida]
          Length = 438

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 97/250 (38%), Gaps = 31/250 (12%)

Query: 173 EADLDFSEEEDV--QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            A +D  E  D     + S E    +  L   +S         +       I I+G  N 
Sbjct: 125 CALIDDMEYLDFLGPVYISAEHNLGMPDLYEVMSPLFEGEHRQKPREKAITISIIGQPNV 184

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKE 287
           GKS+  N++  +   I     GTTRD ++ +   +G  + ++DTAGIR+   +   +EK 
Sbjct: 185 GKSTFMNSILGEKRVITDGTAGTTRDSISAEYCYKGVRLLLTDTAGIRKRAKVTENMEKL 244

Query: 288 GIKRTFLEVENADLILLLKE----INSKK----EISFPKNIDFIFIGTKSDLYSTYTEEY 339
            IK     +  + +++L+ +    IN +     + +  +    + +  KSDL      E 
Sbjct: 245 SIKSATDAISRSSVVVLMVDFTLGINQQDLFIADTAIREGKGIVVVLNKSDLIDDKAVEE 304

Query: 340 DH-----------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           +                   IS+  G G  +++++   +  +   ++  +  +   ++  
Sbjct: 305 EILQAIRRHSRVDFDVPIMKISALRGTGCSKVLDRAIELHKSASSRISTAQLNRWLNV-A 363

Query: 383 LSQTVRYLEM 392
           L     +L+ 
Sbjct: 364 LEHHAPHLQN 373



 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 10/119 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS++FN L +   AIV+++   TRD      +  G      DT G+   
Sbjct: 3   KVAIVGLPNVGKSTIFNRLVRSKSAIVSNVAHVTRDRKEGVANFCGLQFVAIDTGGVG-A 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPKN------IDFIFIGTKSD 330
              ++    ++  L +E  D++L + +       ++  F K          I +  K +
Sbjct: 62  GTGMQALVTEQVELALECTDVVLFVVDAKKGTDAEDTDFAKWLRKRTPKPVILVVNKCE 120


>gi|312623204|ref|YP_004024817.1| small GTP-binding protein [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203671|gb|ADQ46998.1| small GTP-binding protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 403

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 19/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSSL NA+  + +AIV+D+PGTT D +   +++     V + DTAG
Sbjct: 8   ERLHIAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKSMEILPLGPVVLIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK----EINSKKEIS---FPKNIDFIFIGTKS 329
           I + + I+ K  +++T   +   D+ +L+     ++  +K+++     K +  I +  K 
Sbjct: 68  IDD-EGILGKLRVEKTLEVLNKTDIAILVVSDIDDLTYEKQLAKLFDEKKVPKIGVLNKI 126

Query: 330 DLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKL 369
           D    Y E+   L           S  T +G++EL + +  ++ +  + L
Sbjct: 127 DKDPNYKEKLSFLQTSLGMPFLAVSCVTLKGIDELKSSLSKLVPDVGEDL 176


>gi|298373637|ref|ZP_06983626.1| GTP-binding protein Era [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274689|gb|EFI16241.1| GTP-binding protein Era [Bacteroidetes oral taxon 274 str. F0058]
          Length = 297

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 93/213 (43%), Gaps = 22/213 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G+ N GKS+L NAL  + ++I+T    TTR  +   ++ E + +  SDT G
Sbjct: 3   RAGF-VNIVGNPNVGKSTLMNALVGERISIITSKAQTTRHRIMGIVNGEDFQIVYSDTPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKNIDF-----IFIGTKS 329
           + + +  +++   + +   +++AD++L + ++  N +K   F + +         +  K 
Sbjct: 62  VLKPNYKLQESMREFSDSALKDADILLYVTDVADNCEKNADFLEKVKHIGSKTFVMINKI 121

Query: 330 DLYS-------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           DL                  E     IS+    G+ +L+ +I  +L            + 
Sbjct: 122 DLIDEQRLLKLVDFWHTALPEAEIVPISAQERFGISQLLKRIVELLPESPPYFDKDALTD 181

Query: 377 KRHLYHLSQTVRY-LEMASLNEKDCGLDIIAEN 408
           +   + +++ +R  + +    E    +++  E 
Sbjct: 182 RPERFFVNEIIREKILLCYDKEVPYSVEVAVEE 214


>gi|148242816|ref|YP_001227973.1| GTP-binding protein Era-like protein [Synechococcus sp. RCC307]
 gi|147851126|emb|CAK28620.1| GTP-binding protein era homolog [Synechococcus sp. RCC307]
          Length = 309

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 22/200 (11%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
               E  R+G+ + ++G  N GKS+L N L  + VAI + +  TTR+ L   L  E   +
Sbjct: 11  SPTPEGFRSGF-VALVGRPNVGKSTLLNQLVGEKVAITSPVAQTTRNRLRAILTTECSQL 69

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFI 323
            + DT GI +   ++ +  +K     +   D++L L + +          +   K+I   
Sbjct: 70  VLVDTPGIHKPHHLLGERLVKTARNSIGEVDVVLALMDGSEPMGRGDQFVLDLLKSIRQP 129

Query: 324 FI--GTKSDLYSTYTEE-------------YDHLISSFTGEGLEELINKIKSILSNKFKK 368
            +    K DL +    E                  S+ TG+G   L+  +   L      
Sbjct: 130 VVIGLNKQDLIAEEQREELNASYSEVLPDAPLLPFSALTGDGCSALVEALGERLPEGPML 189

Query: 369 LPFSIPSHKRHLYHLSQTVR 388
            P    S +     L + +R
Sbjct: 190 YPKDTVSDQPENLLLGELIR 209


>gi|282878064|ref|ZP_06286869.1| GTP-binding protein Era [Prevotella buccalis ATCC 35310]
 gi|281299804|gb|EFA92168.1| GTP-binding protein Era [Prevotella buccalis ATCC 35310]
          Length = 293

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 82/187 (43%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTDDMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKN-----IDFIFIGTKSDL--- 331
             +++  +  +   + +AD++L + ++  + +K   F +      I  I +  K D    
Sbjct: 67  YKMQEYMLAFSESALADADILLYVTDVVEDPEKNADFLEKVRTMTIPVILVINKIDASNQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                     ++         IS+    G++ L+ +I+ +L +          + K   +
Sbjct: 127 KTVGQLVEKWHALLPNAEILPISAANKFGVDMLLKRIQELLPDSPPYFDKDQLTDKPAKF 186

Query: 382 HLSQTVR 388
            +S+ +R
Sbjct: 187 FVSEIIR 193


>gi|116333398|ref|YP_794925.1| GTPase [Lactobacillus brevis ATCC 367]
 gi|116098745|gb|ABJ63894.1| GTPase [Lactobacillus brevis ATCC 367]
          Length = 301

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+  N +  + +AI+++   TTR+ +      +   +   DT 
Sbjct: 6   YKSGF-VAIVGRPNVGKSTFLNRVIGQKIAIMSNTAQTTRNKIQGIYTTDEAQIVFIDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNI--DFIFIGT 327
           G+ +    +    ++     +   D +L +     K+       I   KN+      +  
Sbjct: 65  GVHKPKSKLGDYMVQSAMSALNEVDAVLFMVNAAEKRGAGDNFIIDRLKNVKAPVYLLIN 124

Query: 328 KSDLYS-------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D                    +  + IS+  G  ++EL+  +   + N  +  P    
Sbjct: 125 KIDQVKPDDLLPVMEQYQTALPWKAVYPISALEGNNVDELLTGLVEQMPNGPQYYPADQV 184

Query: 375 SHKRHLYHLSQTVR 388
           +     + +S+ +R
Sbjct: 185 TDHPERFVVSELIR 198


>gi|242255880|gb|ACS88924.1| GTPase [Helicobacter pylori]
          Length = 170

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ + I +D  GTTRD+    + L  + V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIVITSDFAGTTRDINKRKIALNSHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S +++   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGINALIDAILSTLN 167


>gi|223041036|ref|ZP_03611294.1| ribosome-associated GTPase EngA [Campylobacter rectus RM3267]
 gi|222877708|gb|EEF12831.1| ribosome-associated GTPase EngA [Campylobacter rectus RM3267]
          Length = 467

 Score = 94.9 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 95/239 (39%), Gaps = 33/239 (13%)

Query: 134 LISSETEMQRRLSMEGMS-------GELSSLYGQWID-KLTHIRSFIEADLDFSEEEDVQ 185
           ++ S+ +     ++  ++        ++ S   +    +  +  +     +  S    + 
Sbjct: 91  MMPSDEDKALYYALLKLNLPTALVINKIDSKKDELRSYEFVNFGAKTSFAISVSHNAGID 150

Query: 186 NFSSKEVLNDILFLK----NDISSHISQ-GKLGEIIRN----------GYKIVILGHSNA 230
             +          ++     D+   +   G  GE++R             ++ I+G  N 
Sbjct: 151 ELADWIYKQLKDEIRPDTGEDLDEFLENFGDDGEVVREMSAREDYERKNIQVGIIGRVNV 210

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEG 288
           GKSSL NAL K+  A+V+D+ GTT D +      E  + +  DTAGIR+   I  +E+  
Sbjct: 211 GKSSLLNALVKESRAVVSDVAGTTIDPVNETFVYEDRIFEFVDTAGIRKRGKIEGIERYA 270

Query: 289 IKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           + RT   +E AD+ LL+ + +            ++    +  I +  K D      +++
Sbjct: 271 LNRTESALELADIALLVLDSSEPLTELDERIAGLAAKFELGVIIVLNKWDKSEEDFDKF 329



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 18/164 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI+++G  N GKSSLFN LA + +AI +D+ GTTRD     +++      + D+ G+ ++
Sbjct: 3   KIILVGKPNVGKSSLFNRLAGRRIAITSDVSGTTRDTNKTIIEIYDKSCVLIDSGGLDDS 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKSDLY 332
            ++  K    +T  E  ++D I+ + +      +  K +       N+    +  K D  
Sbjct: 63  SELF-KNVKAKTLAEARSSDAIIFMVDGKMMPSDEDKALYYALLKLNLPTALVINKIDSK 121

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFK 367
                 Y+ +          S     G++EL + I   L ++ +
Sbjct: 122 KDELRSYEFVNFGAKTSFAISVSHNAGIDELADWIYKQLKDEIR 165


>gi|293556346|ref|ZP_06674927.1| GTP-binding protein Era [Enterococcus faecium E1039]
 gi|291601413|gb|EFF31684.1| GTP-binding protein Era [Enterococcus faecium E1039]
          Length = 299

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +          +   DT GI +  
Sbjct: 9   VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGVYTTPEAQLIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNI--DFIFIGTKSD--- 330
             +    ++  +  ++  D +L +   + K+       I   KN+      I  K D   
Sbjct: 69  HRLGDFMVEAAYSALKEVDAVLFMISADQKRGRGDDFIIERLKNVHSPVYLIINKIDKIH 128

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y+ +        IS+  G  +E L++ + S +    +  P    +     
Sbjct: 129 PDELLGIIEDYSTQMPFAQVIPISATEGNNVERLMDVLVSEMPEGPQYFPDDQVTDHPEY 188

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 189 FIVSELIR 196


>gi|114320504|ref|YP_742187.1| GTP-binding protein Era [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226898|gb|ABI56697.1| GTP-binding protein Era [Alkalilimnicola ehrlichii MLHE-1]
          Length = 315

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 23/206 (11%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +IR G  + ++G  N GKS+L N L  + ++IVT  P TTR  +      +G  +   DT
Sbjct: 21  LIRCG-HVALVGRPNVGKSTLLNQLLGQKISIVTRKPQTTRQRILGVCHRDGAQIVYVDT 79

Query: 275 AGIRETDDIVEKEGIKRTFL-EVENADLILLLKE-----INSKKEISFPKNIDFIFIG-- 326
            G+ +  D      + RT    + + DL++ L +        +  +   K  D   I   
Sbjct: 80  PGLHQRRDKALNRYLNRTAANALADVDLVVFLVDRLHFKPEDEAVLERLKRRDVPVILAI 139

Query: 327 TKSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
            K D      +   H+               S+  GE L  L   I   L       P  
Sbjct: 140 NKVDRLRDKAQLLPHIQWLSEQHPFVEVVPLSALKGENLAPLEEAILRQLPESPPLFPED 199

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEK 398
             + +   + +++ +R   M  L E+
Sbjct: 200 YITDRGPRFRIAELIREQLMRHLGEE 225


>gi|239616804|ref|YP_002940126.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505635|gb|ACR79122.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1]
          Length = 409

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 15/158 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           +   G  N GKSSL NAL  +DV+IV+D+PGTT D +   L++     V + DT G+ + 
Sbjct: 11  LAFFGKRNVGKSSLINALVGQDVSIVSDVPGTTTDPVYKSLEIHPIGPVTVVDTPGVDDV 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK------EISFPKNIDFIFIGTKSDL--- 331
            ++ E   +KR    +  AD+ +L+ +    +      E     ++ F+    K D    
Sbjct: 71  GELGELR-VKRALKAMYKADIAILVVDQRWNEYEDWLIEQFIKMDLPFVIAVNKIDQSWN 129

Query: 332 ---YSTYTEEYDHLISS-FTGEGLEELINKIKSILSNK 365
                     Y H   S     G+E+L   I   L  +
Sbjct: 130 TSEIEPKVSPYPHCFVSGLKKTGIEDLRRLISENLPQE 167


>gi|206895297|ref|YP_002247145.1| ribosome-associated GTPase EngA [Coprothermobacter proteolyticus
           DSM 5265]
 gi|206737914|gb|ACI16992.1| ribosome-associated GTPase EngA [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 425

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 17/165 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           + VI+G  N GKSSLFN L     A+  D PG TRD L+   +  G   ++ DT G+   
Sbjct: 3   RFVIIGAPNVGKSSLFNRLVGGRKALTYDQPGVTRDYLSHICEWRGRYFELVDTGGLYRG 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKSDLY 332
           +  +E    KR+    ++AD++L + + +   S  E    ++      + I +G K DL 
Sbjct: 63  EQDLESF-WKRSLEIAQDADVVLFVVDASEHLSSVEYDIAQDLRKMGKEVIVVGNKMDLL 121

Query: 333 S--------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                        +    +S+ TG    +L++ +   L  + + +
Sbjct: 122 PEGFNPDLYNLGFDKVQFVSATTGRNSGDLLDLMWKYLGEEDQDI 166



 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 73/139 (52%), Gaps = 12/139 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +++ ++G +NAGKS+L N L  K+  +V+++PGTT D +T  ++++  +V+++DT G+R+
Sbjct: 173 FRVSVIGRTNAGKSTLMNRLLGKERVLVSEMPGTTLDFITETINVKDMVVEVTDTPGLRK 232

Query: 280 TD----DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGT 327
            D     + E   +KR    +    +++ + + +        S   I+  + I +I +  
Sbjct: 233 GDLRRLSVPEMLAVKRLENRLRKQQVLIHVIDASVGLTSLDESVIRIAEEEGIGYIAVLN 292

Query: 328 KSDLYSTYTEEYDHLISSF 346
           K DL     +    L  +F
Sbjct: 293 KIDLAEDPRKAESILTEAF 311


>gi|15613930|ref|NP_242233.1| Era/ThdF family GTP-binding protein [Bacillus halodurans C-125]
 gi|13959358|sp|Q9KD52|ERA_BACHD RecName: Full=GTPase Era
 gi|10173983|dbj|BAB05086.1| GTP-binding protein (Era/ThdF family) [Bacillus halodurans C-125]
          Length = 304

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 80/196 (40%), Gaps = 24/196 (12%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           + G+K   + I+G  N GKS+L N +  + +AI++D P TTR+ +      E   +   D
Sbjct: 5   KEGFKSGFVSIIGRPNVGKSTLLNHVIGQKIAIMSDKPQTTRNKIQGVYTSEDSQIVFID 64

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFI 325
           T GI +    +    +K     ++  DLIL + +         +  I   K      I +
Sbjct: 65  TPGIHKPKHKLGDFMMKVAQNTLKEVDLILYVVDGAEAFGPGEEFIIERLKEAKTPVILV 124

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L  TY  +++      +S+  G  +  L+ +I   LS   +  P  
Sbjct: 125 INKIDKVHPDDLLSLIETYRHKHEFEEVVPVSALQGNNVPTLLLEITKHLSEGPQYYPSD 184

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +++ +R
Sbjct: 185 QVTDHPERFVIAELIR 200


>gi|254424176|ref|ZP_05037894.1| GTP-binding protein Era, putative [Synechococcus sp. PCC 7335]
 gi|196191665|gb|EDX86629.1| GTP-binding protein Era, putative [Synechococcus sp. PCC 7335]
          Length = 431

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 83/217 (38%), Gaps = 26/217 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N L  + +AI + +  TTR+ L   L      +   DT G
Sbjct: 135 RSGF-VSIVGRPNVGKSTLMNYLVGQKIAITSPVAQTTRNRLQGILTTPQAQIIFVDTPG 193

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
           I +    + K  ++   + + + D++L + E  S           +        +    K
Sbjct: 194 IHKPHHELGKVLVQNARVAIGSVDVVLFVVEATSAAGKGDLFVSNLIAQTKGPVVLGINK 253

Query: 329 SD-LYSTYTEEYDHLI----------------SSFTGEGLEELINKIKSILSNKFKKLPF 371
            D L  +  +  +                   S+ TGEG+E L  ++ + L       P 
Sbjct: 254 VDQLPESGRKAAEIKHSYEALAAEHGWSVVKFSALTGEGIENLQTELVAKLEPGPYYYPP 313

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            + + +   + + + +R   +    E+      IA  
Sbjct: 314 DLVTDQPERFIMGELIREQILLHTREEVPHSVAIAIE 350


>gi|163782078|ref|ZP_02177077.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882610|gb|EDP76115.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1]
          Length = 304

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 29/196 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIR-- 278
           + I+G  N GKS+L N +  + V+IVT  PGTTR  +    ++ G   +   DT GI   
Sbjct: 6   VTIVGKPNVGKSTLLNNILGRKVSIVTPKPGTTRIRVLGVKNISGEAQIIFLDTPGIYQP 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEI------SFPKNIDFIFIGT 327
           +  D++ K  ++     +E+AD+IL + +         +E+       + +    I +  
Sbjct: 66  KGADVLGKSMLQMARQSLEDADVILFMIDAEEGWRKRDEEVFQSYVKPYAEQKPVILVVN 125

Query: 328 KSD----------LYSTYTEEYDHLI-----SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           K D          L     +++         S+  G  LEEL   +   L       P  
Sbjct: 126 KIDKLGAAKNVLPLIEEIHKKHPEFKEIVPTSALKGANLEELEKTLLKYLPEGEPLFPED 185

Query: 373 IPSHKRHLYHLSQTVR 388
           + +        ++ +R
Sbjct: 186 MLTDLPLRLLAAEIIR 201


>gi|291320054|ref|YP_003515312.1| GTP binding protein era [Mycoplasma agalactiae]
 gi|290752383|emb|CBH40354.1| GTP binding protein era [Mycoplasma agalactiae]
          Length = 290

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 89/224 (39%), Gaps = 32/224 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSL N + K D+AIV+++P TTRD +      +GY     DT GI +  
Sbjct: 6   ISILGRPNVGKSSLLNKIIKYDLAIVSNVPQTTRDQIMGVYTEDGYQFVFVDTPGIHKPL 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKNIDF--- 322
           +++ +   K  F  +++ D +L L  +                N+K +I+    ID    
Sbjct: 66  NLLGESLNKEAFSSLKDIDCVLFLSPVNEDIKSGDKLILERITNAKNKIAIISKIDLAKS 125

Query: 323 -IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
              I  K D    Y       +S+   + ++ LI  +K    +          + K   +
Sbjct: 126 PDEIAKKIDDLKEYGFSKIISVSNKNDKSVDSLIEILKEYAYDAPPFYDEDYITDKSMRF 185

Query: 382 HLSQTVRYLEMASLNEKDCGL---------DIIAENLRLASVSL 416
                  Y+  +++N     L         D I E  R+   ++
Sbjct: 186 M---AKEYIRESAINLLTDELPHSIAVEVQDFIEEEDRITINAI 226


>gi|159027574|emb|CAO86947.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 318

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L  + +AI + I  TTR+ L   +  E   +   DT GI +  
Sbjct: 29  IGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGIVTDERSQMIFVDTPGIHKPH 88

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSDLYS 333
             + K  +K     + + DL+L + + ++          ++        I    K+D   
Sbjct: 89  HELGKVLVKNAENAINSVDLVLFVVDSSNFLGGGDRYIADLLTKNQTPTILGLNKADQQP 148

Query: 334 TYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E  D                 S+  G G+ EL N +   L       P  + + +  
Sbjct: 149 EDPEPIDDSYRTLAAENNWPLLKFSALEGTGIPELQNLLIDSLEVGPYYYPPDLVTDQPE 208

Query: 380 LYHLSQTVRYLEMASLNEK 398
            + + + +R   +    ++
Sbjct: 209 RFIMGELIREQILLQTRQE 227


>gi|227890898|ref|ZP_04008703.1| GTP-binding protein Era [Lactobacillus salivarius ATCC 11741]
 gi|227867307|gb|EEJ74728.1| GTP-binding protein Era [Lactobacillus salivarius ATCC 11741]
          Length = 300

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 10  VAILGRPNVGKSTFLNRVVGQKIAIMSDKAQTTRNKIQGIYTEDDAQIVFIDTPGIHKPH 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSD--- 330
             +    ++     +   D +L +     K+       I   +N       +  K D   
Sbjct: 70  SRLGDFMVESALSTLNEVDAVLFMVNATQKRGRGDDFIIERLRNVKKPIYLVINKIDQIH 129

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y    D+     IS+  G    ELI  + + L    +  P    +     
Sbjct: 130 PDKLLQIMDDYRNTLDYAEVFPISALEGNNCPELIESLVNTLPEGPQYYPADQITDHPER 189

Query: 381 YHLSQTVR 388
           +   + +R
Sbjct: 190 FIAGELIR 197


>gi|224542130|ref|ZP_03682669.1| hypothetical protein CATMIT_01305 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524967|gb|EEF94072.1| hypothetical protein CATMIT_01305 [Catenibacterium mitsuokai DSM
           15897]
          Length = 298

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 89/245 (36%), Gaps = 41/245 (16%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+L N + K  + I +    TTR+ +      +   +   DT 
Sbjct: 3   YKSGF-VSIVGRPNVGKSTLLNHILKTKLVITSPTAQTTRNTVQGVYTDDEAQIVFLDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           GI +  D +           +   D+IL ++  N +         E           +  
Sbjct: 62  GIHKPQDGLGSFMNTTALNSIVGTDVILFIEPANERIGKGDRFIVERLKKAECPVYLVLN 121

Query: 328 KSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K+DL S                 +    IS+  G+ ++ELI  +K  L       P    
Sbjct: 122 KADLLSKDELMDKLIEWNQMMDFKEIIPISALNGDNVDELIKTVKQDLPEGPAIYPEDTI 181

Query: 375 SHKRHLYHLSQTVR---------------YLEMASLNEKDCGLDIIAENL--RLASVSLG 417
           +     + +++ +R                +E+    E + GLDI+A  +  R +   + 
Sbjct: 182 TDHPEQFIMAEFIREKILYFTHDEIPHDVAIEIEQWIEDENGLDIMAVIIVNRKSQKGI- 240

Query: 418 KITGC 422
            I G 
Sbjct: 241 -IIGK 244


>gi|257460130|ref|ZP_05625234.1| ribosome-associated GTPase EngA [Campylobacter gracilis RM3268]
 gi|257442571|gb|EEV17710.1| ribosome-associated GTPase EngA [Campylobacter gracilis RM3268]
          Length = 461

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++I+G  N GKSSLFN LA   +AI +D+ GTTRD    + ++    V++ D+ G+ +T 
Sbjct: 4   LIIIGRPNVGKSSLFNRLAGARIAITSDVAGTTRDTNRAEAEIFDRRVRVIDSGGLDDTS 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFP---KNIDFIFIGTKSDLYS 333
           ++       +T  E ++ADLI+ + +      + ++ I F              K D   
Sbjct: 64  ELF-ARVQAKTLSEAKSADLIIFMTDGKLLPSDDERRIFFSLQRLGKPIALAVNKIDGKR 122

Query: 334 TYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                ++          IS     G++EL   I   L     +       
Sbjct: 123 DEERSWEFNEFGVKFFPISVSHNSGIDELKEWIYGFLDPAPARQDEDEIF 172



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 10/130 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N GKSSL NAL     ++V+D  GTT D +    +  G  ++  DTAGIR 
Sbjct: 199 IGVGIIGRVNVGKSSLLNALVGSQRSVVSDYAGTTIDPVNESTEFGGRTLEFIDTAGIRR 258

Query: 280 TDDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
              I  +E+  + RT   ++N+D+ LL+ + +            ++    +  I I  K 
Sbjct: 259 RGKIEGIERFALNRTEKILQNSDITLLVLDASEPLNELDERIAGLAAKFELGLIIILNKW 318

Query: 330 DLYSTYTEEY 339
           DL     +E+
Sbjct: 319 DLCERDYDEF 328


>gi|329114596|ref|ZP_08243355.1| GTP-binding protein EngA [Acetobacter pomorum DM001]
 gi|326696076|gb|EGE47758.1| GTP-binding protein EngA [Acetobacter pomorum DM001]
          Length = 479

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 18/165 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           +VI G  N GKS+LFN L  +  A+V D PG TRD       + G  V++ DTAG+ E  
Sbjct: 22  VVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEGVALIRGRYVRLIDTAGLEEAA 81

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D +       +   V  ADL+L   +  +          +    +N   + +  K++  
Sbjct: 82  PDSLFGRMRFSSESAVREADLVLFCVDARAGITPADEHFAQWIRRQNRPVLLVANKTEGR 141

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKK 368
           L +    E           +S+  GEG+ +L+ +I   L  + + 
Sbjct: 142 LGTASAMEAYALGLGEPLALSAEHGEGVTDLMWEIADRLPAEPEH 186



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 91/259 (35%), Gaps = 35/259 (13%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E      ++        ++ +    + +G+         ++ I+G  NAGKS+L NAL  
Sbjct: 175 EIADRLPAEPEHKAEPEIEAEDDFAVEEGEEPPRPTGPLRVAIVGRPNAGKSTLMNALLG 234

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVEN 298
           ++  I     G TRD + + L       +I DTAG+R+    D+ +EK  +      ++ 
Sbjct: 235 EERMITGPEAGLTRDSIAVTLRDGDDTFEIVDTAGLRKKARIDESLEKMSVSAAIEALKM 294

Query: 299 ADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLY------------------ 332
           A++ +L+ +      ++++   +         +    K D                    
Sbjct: 295 AEVAVLVLDATLGVHEQDLQIARLIEREGRACVLALNKWDAVQDRVATRNAILDRLSISL 354

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH------KRHLYHLSQT 386
           +          S+ TG  + +L+  ++   +    ++P    +       +RH   L Q 
Sbjct: 355 AQMRGVPVVTFSALTGASIHKLLPAVRDAWTVWNARVPTGALNRWFEEMLERHQPPLVQG 414

Query: 387 VRYLEMASLNEKDCGLDII 405
            R         K      +
Sbjct: 415 RRLKLRYITQVKSRPPTFV 433


>gi|294782449|ref|ZP_06747775.1| GTP-binding protein Era [Fusobacterium sp. 1_1_41FAA]
 gi|294481090|gb|EFG28865.1| GTP-binding protein Era [Fusobacterium sp. 1_1_41FAA]
          Length = 297

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +  + VAIV+D  GTTRD +   L+++       DT GI +  
Sbjct: 6   IAIVGRPNVGKSTLINKMVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
            ++ +         +++ D+IL L + +             I+   N   I +  K DL 
Sbjct: 66  HLLGEYMTNIAVNILKDVDIILFLIDASKTIGTGDMFVMDRINENSNKPKILLVNKVDLI 125

Query: 333 STYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           S   +              +     S+    G+ +L+  +   L    K  P  + +   
Sbjct: 126 SDEQKEEKLKEIEEKLGKFDKIIFASAMYSFGIAQLLEALDPYLEEGVKYYPDDMYTDMS 185

Query: 379 HLYHLSQTVR 388
               +++ VR
Sbjct: 186 TYRIITEIVR 195


>gi|4467675|emb|CAB37789.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L  + V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNAHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSD--- 330
            ++ KE         + +DLIL + +   I S ++I   +     N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKPAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I + L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNALN 167


>gi|312794014|ref|YP_004026937.1| small gtp-binding protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181154|gb|ADQ41324.1| small GTP-binding protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 403

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 19/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSSL NA+  + +AIV+D+PGTT D +   +++     V + DTAG
Sbjct: 8   ERIHIAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKAMEILPLGPVVLIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISFP------KNIDFIFIGTKS 329
           I +   +  K  +++T   ++  D+ IL++ +++      +       K +  I +  K 
Sbjct: 68  IDDEGALG-KLRVEKTLEVLDKTDIAILVVSDLDDLTYEKWLVKLFEQKKVARIGVLNKI 126

Query: 330 DLYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKFKKL 369
           D    Y E+              +S    +G+++L N +  ++ +  + L
Sbjct: 127 DKDQNYKEKLSFLQSNLGMPFLPVSCAQQKGIDDLKNALTKLIPDVGEDL 176


>gi|227892551|ref|ZP_04010356.1| GTP-binding protein Era [Lactobacillus ultunensis DSM 16047]
 gi|227865672|gb|EEJ73093.1| GTP-binding protein Era [Lactobacillus ultunensis DSM 16047]
          Length = 301

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 79/192 (41%), Gaps = 21/192 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + ++G  N GKS+L N L  + VAI ++ P TTR+ ++         V   DT G
Sbjct: 7   KSGF-VALIGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSNKMQVVFVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTKS 329
           I +    ++    K +   + + DL+L + E            ++     +    +  K 
Sbjct: 66  IFKPHSKLDDYMDKASLSSLNDVDLVLFMVEPEEIGKGDQYIADLLKEVKVPVFLVINKV 125

Query: 330 D---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           D         +  +Y +    +    IS+  G G+E+L+  I   L    +       + 
Sbjct: 126 DQIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLGTINKYLPEGPQYYGADQITD 185

Query: 377 KRHLYHLSQTVR 388
           +   + +++ +R
Sbjct: 186 RPEYFVVAELIR 197


>gi|315929258|gb|EFV08474.1| small GTP-binding domain protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 394

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 106/241 (43%), Gaps = 31/241 (12%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL--NDILFLKNDIS--SHISQGKLGEIIR 217
           + ++ ++       LD    E ++ F  +E L  ++   L++ +       + +  E+ +
Sbjct: 69  VKEIFNLSVTHNVGLD-ELYEWLEKFLHEEFLIPDEEENLEDFLEYYEEGKEFQFKEVEQ 127

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++  DTAGI
Sbjct: 128 NHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGI 187

Query: 278 RETDDIV--EKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNI-DFIFIGT 327
           R+   I   E+  + RT   + ++ + LL+ +        + +      K+    I +  
Sbjct: 188 RKRGKIQGLERFALNRTEKILSHSQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLN 247

Query: 328 KS----------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           K                 D +          +S+ +G+ +  L++KI  I  N  +K+  
Sbjct: 248 KWDKSEMDFDKTVKELRLDRFKFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQT 307

Query: 372 S 372
           S
Sbjct: 308 S 308


>gi|260460374|ref|ZP_05808626.1| small GTP-binding protein [Mesorhizobium opportunistum WSM2075]
 gi|259034019|gb|EEW35278.1| small GTP-binding protein [Mesorhizobium opportunistum WSM2075]
          Length = 476

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ I+G  N GKS+LFN L  + +A+V D PG TRD       L      + DTAG  +
Sbjct: 3   FKVAIIGRPNVGKSTLFNRLVGRKLALVDDTPGVTRDRRVHAAKLYDLHFDVIDTAGFED 62

Query: 280 TDDIVE-KEGIKRTFLEVENADLILL--------LKEINSKKEISFPKNIDFIFIGTKSD 330
                       +T + +  ADLI          L +  +  EI        + +  K++
Sbjct: 63  AAASTLPGRMRAQTEIAIHEADLIFFTIDAKSGLLPDDRTFAEIVRKSGKPVVLVANKAE 122

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSIL 362
                    +            S+  G+G+ +L + + + L
Sbjct: 123 AKGAQGGMLEAWELGLGEPIPVSAEHGQGMPDLRDAVIAAL 163



 Score = 93.0 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 97/253 (38%), Gaps = 40/253 (15%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
              D +    +  EA     +EED Q  ++ EVL     +  DI+      +        
Sbjct: 154 DLRDAVI--AALGEARAFGEDEEDDQEIATGEVL-----IGEDIAD--PDAEPAYDDTKP 204

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I ++G  NAGKS+L NAL  ++  +     G TRD +++D D  G  +K+ DTAG+R 
Sbjct: 205 MRIAVVGRPNAGKSTLINALIGEERLLTGPEAGITRDSISVDWDWRGRRIKLFDTAGMRR 264

Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              I EK     ++     +  A++++++ +     E        +   +    +    K
Sbjct: 265 KARIHEKLEVMSVQDGLRAIRFAEIVIIVLDATIPFEKQDLQIADLIIREGRAPVIAFNK 324

Query: 329 SDLYSTYTE------------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL     E                       +S+ TG GL++L++ +         ++ 
Sbjct: 325 WDLIDHPQELLAELREKTERLLPQARGIQAVPVSAETGRGLDKLMDAVLKTHKVWNSRVS 384

Query: 371 FSIPSHKRHLYHL 383
                  R L  +
Sbjct: 385 TG--KLNRWLEAI 395


>gi|21672838|ref|NP_660905.1| GTP-binding protein EngA [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|8134425|sp|O51881|DER_BUCAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|2827027|gb|AAC38119.1| ORF453 hypothetical protein [Buchnera aphidicola]
 gi|21623492|gb|AAM68116.1| probable GPT-binding protein EngA [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 453

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 27/188 (14%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
             +  +  +N  KI  +G  N GKS+L N+L  K   I ++  GTT D + + +      
Sbjct: 177 SQEHSKKEKNSVKIACIGKPNVGKSTLINSLLMKKRMITSNKAGTTLDTVLVPIKYNYKN 236

Query: 269 VKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----P 317
               DTAG+ +     + +EK    +T   +E + L LL+ +     SK+++        
Sbjct: 237 YIFIDTAGMSKKKSKTNKIEKFCKIKTLQTIEKSHLTLLIIDAKDQISKQDLLLSSFIEK 296

Query: 318 KNIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSI 361
                I +  K DL S   ++                  H IS+   EG  EL   I + 
Sbjct: 297 SGKPLIIVINKCDLLSLKEKKNLENLIKKQLKCNFFSKIHFISALNNEGTVELFKSIDTS 356

Query: 362 LSNKFKKL 369
                KK+
Sbjct: 357 YHTSQKKI 364



 Score = 93.0 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 18/154 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           IV++G +N GKS+LFN L+K   A+V D PG TRD       L E   + I DTAGI   
Sbjct: 5   IVLIGRTNVGKSTLFNILSKTRNALVADYPGLTRDRNYGYCYLKENKKITIVDTAGINFK 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNI-----DFIFIGTKSDLY 332
              +EK+  ++T   ++  D IL L         +E    + I       I +  K D  
Sbjct: 65  SQKIEKQSHEQTLKAIKECDGILFLVNARDGVMPEEYEISRKIRKYEKKTILVINKIDGI 124

Query: 333 STYTEEYDHL---------ISSFTGEGLEELINK 357
              ++  +           IS+   +G+  LI+K
Sbjct: 125 KEISKINEFYSLGFKENIKISASHNQGINNLISK 158


>gi|328955535|ref|YP_004372868.1| iron-only hydrogenase maturation protein HydF [Coriobacterium
           glomerans PW2]
 gi|328455859|gb|AEB07053.1| iron-only hydrogenase maturation protein HydF [Coriobacterium
           glomerans PW2]
          Length = 422

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 40/193 (20%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKSSL NA+  +D+A+V+D PGTT D +   ++L     V I DT G
Sbjct: 12  NRVHIGFFGRRNAGKSSLVNAVTGQDLAVVSDTPGTTTDPVYKSMELLPLGPVVIIDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTK 328
             +T ++ E   +K+T   +   D+ +L+ +             E+   + +  + I  K
Sbjct: 72  FDDTGELGELR-VKKTRQVLNKCDIAILVYDAASGVTAADRQLLELIRDRGLPHLIIANK 130

Query: 329 SDLYSTYTEEY---------------------DHLISSFTGEGLEELINKIKSILSNKFK 367
           SD  +   +                          +S+ +G+G+ EL  +I ++      
Sbjct: 131 SDRGAAAGDSATAGPDAATASSASAAAPTDNEALCVSALSGQGIHELKERIGALAGTD-- 188

Query: 368 KLPFSIPSHKRHL 380
                   H+RHL
Sbjct: 189 -------RHERHL 194


>gi|295693063|ref|YP_003601673.1| GTP-binding protein era homolog [Lactobacillus crispatus ST1]
 gi|295031169|emb|CBL50648.1| GTP-binding protein era homolog [Lactobacillus crispatus ST1]
          Length = 300

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 82/195 (42%), Gaps = 21/195 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ + ++G  N GKS+L N L  + VAI ++ P TTR+ ++     +   V   D
Sbjct: 4   KEFKSGF-VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDEMQVVFVD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIG 326
           T GI +    ++    K +   + + DL+L + E             +     +  + + 
Sbjct: 63  TPGIFKPHSKLDDYMDKASVSSLNDVDLVLFMVEPEEMGKGDQYIANLLKEVKVPVLLVI 122

Query: 327 TKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         +  +Y +    +    IS+  G G+E+L+  IK  L    +      
Sbjct: 123 NKVDDIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLKTIKEYLPVGPQYYGADQ 182

Query: 374 PSHKRHLYHLSQTVR 388
            + +   + +++ +R
Sbjct: 183 ITDRPEYFVVAELIR 197


>gi|227878694|ref|ZP_03996608.1| GTP-binding protein [Lactobacillus crispatus JV-V01]
 gi|256843288|ref|ZP_05548776.1| GTP-binding protein Era [Lactobacillus crispatus 125-2-CHN]
 gi|256850355|ref|ZP_05555783.1| GTP-binding protein Era [Lactobacillus crispatus MV-1A-US]
 gi|262046497|ref|ZP_06019459.1| GTP-binding protein Era [Lactobacillus crispatus MV-3A-US]
 gi|293380657|ref|ZP_06626708.1| GTP-binding protein Era [Lactobacillus crispatus 214-1]
 gi|312978179|ref|ZP_07789923.1| GTP-binding protein Era [Lactobacillus crispatus CTV-05]
 gi|227861709|gb|EEJ69314.1| GTP-binding protein [Lactobacillus crispatus JV-V01]
 gi|256614708|gb|EEU19909.1| GTP-binding protein Era [Lactobacillus crispatus 125-2-CHN]
 gi|256712752|gb|EEU27745.1| GTP-binding protein Era [Lactobacillus crispatus MV-1A-US]
 gi|260573368|gb|EEX29926.1| GTP-binding protein Era [Lactobacillus crispatus MV-3A-US]
 gi|290922785|gb|EFD99736.1| GTP-binding protein Era [Lactobacillus crispatus 214-1]
 gi|310894897|gb|EFQ43967.1| GTP-binding protein Era [Lactobacillus crispatus CTV-05]
          Length = 300

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 82/195 (42%), Gaps = 21/195 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ + ++G  N GKS+L N L  + VAI ++ P TTR+ ++     +   V   D
Sbjct: 4   KEFKSGF-VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDEMQVVFVD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIG 326
           T GI +    ++    K +   + + DL+L + E             +     +  + + 
Sbjct: 63  TPGIFKPHSKLDDYMDKASVSSLNDVDLVLFMVEPEEMGKGDQYIANLLKEVKVPVLLVI 122

Query: 327 TKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         +  +Y +    +    IS+  G G+E+L+  IK  L    +      
Sbjct: 123 NKVDEIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLKTIKEYLPVGPQYYGADQ 182

Query: 374 PSHKRHLYHLSQTVR 388
            + +   + +++ +R
Sbjct: 183 ITDRPEYFVVAELIR 197


>gi|32473806|ref|NP_866800.1| GTP-binding protein [Rhodopirellula baltica SH 1]
 gi|32444342|emb|CAD74340.1| probable GTP-binding protein [Rhodopirellula baltica SH 1]
          Length = 472

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSLFN LA++ +AIV +  G TRD +T  ++ +    ++ DT G+   
Sbjct: 23  QVAIVGRPNVGKSSLFNWLARRRLAIVDNFEGVTRDRMTTLIESDDQFFELIDTGGMGVE 82

Query: 281 DDIVEKEGIKRTF-LEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDL 331
           D       ++R   + + +AD+ILL+ ++        ++ +   +      I +  K+D 
Sbjct: 83  DADDLTSDVRRQIDMAIASADVILLVVDVQTGLMPLDEEVVERLRGVERPVILVANKAD- 141

Query: 332 YSTYTEEYDHLISSFTGEGLEELI 355
                E  D     F   G   LI
Sbjct: 142 ----QEHQDIHADEFRRLGRGHLI 161



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 11/126 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+  N LA+ D  IV+++ GTTRD + +  +++G      DT G+R+
Sbjct: 196 MKIAIVGRRNVGKSTFVNTLAESDRMIVSEVAGTTRDSVDVRFEIDGQTFLAIDTPGLRK 255

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
              I    +  G  R    V  AD++L+  +   K               +   IF+  K
Sbjct: 256 RKSIRTDLDFYGTHRAQRSVRRADVVLMFFDALEKTSKVDKQLVGYIMEHHKPVIFVVNK 315

Query: 329 SDLYST 334
            D    
Sbjct: 316 WDKVDK 321


>gi|78212431|ref|YP_381210.1| GTP-binding protein Era [Synechococcus sp. CC9605]
 gi|78196890|gb|ABB34655.1| GTP-binding protein Era [Synechococcus sp. CC9605]
          Length = 311

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 24/198 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ I ++G  N GKS+L N L  + VAI + +  TTR+ L   L  E   + + D
Sbjct: 8   EDYRSGF-IALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAILTTEVAQMVLVD 66

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFI 325
           T GI +   ++ +  +K     +   DL++LL E   +          +   +++  +  
Sbjct: 67  TPGIHKPHHLLGERLVKSARSAIGEVDLVVLLLEGCERPGRGDAFIVNLLQQQSLPVLVA 126

Query: 326 GTKSDLYS---------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
             K D  +                 T    H  S+ +G+G  +L   + + L    +  P
Sbjct: 127 LNKWDKLAEEHRAEAEEAYAALLQETNWPVHRCSALSGDGCADLTAAMAAQLPLGPQLYP 186

Query: 371 FSIPSHKRHLYHLSQTVR 388
             + S +     L + +R
Sbjct: 187 PEMVSDQPERVLLGELIR 204


>gi|58584843|ref|YP_198416.1| GTP-binding protein EngA [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58419159|gb|AAW71174.1| Predicted GTPase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 470

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 11/128 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  ++ I+G  N GKS+  N+L  ++  I +  PGTTRD + I  +  G L+ + DTAGI
Sbjct: 203 NRLRVAIIGRPNVGKSTFLNSLLSENRLITSSEPGTTRDSVDITYNHNGKLITLIDTAGI 262

Query: 278 RETDDIV---EKEGIKRTFLEVENADLILLLKE--INSKK------EISFPKNIDFIFIG 326
           R   +++   E + +K++   ++ + +++L+ +  +  K+      E +       I + 
Sbjct: 263 RRRANLIDNLELKFVKKSMESIKRSHVVVLMLDSLLGIKQQDLSIGEAAIKGGKGIIIVL 322

Query: 327 TKSDLYST 334
            K DL + 
Sbjct: 323 NKWDLINK 330



 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 17/159 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  NAGKS+LFN +  +  A+V++IPG TRD       +    +KI DT G  +
Sbjct: 2   LKIAIVGLPNAGKSTLFNRILGRKAAVVSNIPGITRDRQEGVGRISDLELKIIDTGGWND 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDL 331
             +    + +++    + +AD+I  L +   + E        +    N   I I  K + 
Sbjct: 62  QTNFFL-QIVEQIEFSLFSADIIFFLVDAKVQNEQNKEFAKWLKRRTNKSVILIANKCES 120

Query: 332 YSTYTEEY--------DHLISSFTGEGLEELINKIKSIL 362
           Y +   +Y           IS+    G+ +L N +  ++
Sbjct: 121 YKSENIDYLQFFDFIGPVYISAEHNLGMVDLYNALAGVI 159


>gi|269115218|ref|YP_003302981.1| GTP-binding Era-like protein [Mycoplasma hominis]
 gi|268322843|emb|CAX37578.1| GTP-binding protein era homolog [Mycoplasma hominis ATCC 23114]
          Length = 294

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 83/191 (43%), Gaps = 24/191 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + ++G  N GKS+  N +   +++I+TD P TT+D +    + + Y +   DT GI + 
Sbjct: 6   NVCLIGRPNVGKSTFLNNVLNFNLSIITDKPQTTKDNIRGIYNDKDYQIIFIDTPGIHKA 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDL 331
           ++++ +    +++  +EN+D++L L   N           ++I+   N + I + +K DL
Sbjct: 66  ENLLSERLNSKSYEAIENSDVVLFLTPANEAIGTGDKFIIEKINETNNENKIAVISKIDL 125

Query: 332 YSTYTEEYDHLISSFTGEGLE--------------ELINKIKSILSNKFKKLPFSIPSHK 377
            +T  EE D         G E              +LIN+IK+         P       
Sbjct: 126 LNT-KEEADKKAEELKKLGFEKVFGIGQNLPTSYLDLINEIKTYCYEDEPLYPDDQIGDI 184

Query: 378 RHLYHLSQTVR 388
              +   + +R
Sbjct: 185 TLRFMAKEIIR 195


>gi|260435524|ref|ZP_05789494.1| GTP-binding protein Era [Synechococcus sp. WH 8109]
 gi|260413398|gb|EEX06694.1| GTP-binding protein Era [Synechococcus sp. WH 8109]
          Length = 311

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 24/198 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ I ++G  N GKS+L N L  + VAI + +  TTR+ L   L +E   + + D
Sbjct: 8   EDYRSGF-IALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAVLTMEVAQMVLVD 66

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFI 325
           T GI +   ++ +  +K     +   DL++LL E   +          +   +++  +  
Sbjct: 67  TPGIHKPHHLLGERLVKSARSAIGEVDLVVLLLEGCERPGRGDAFIVNLLQQQSLPVLVA 126

Query: 326 GTKSD------------LYSTYTEEYD---HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             K D             Y+   +E +   +  S+ +G+G  EL   + + L    +  P
Sbjct: 127 LNKWDKLPEERRSEAEEAYAALLQETNWPVYRCSALSGDGCAELTTAMAAQLPLGPQLYP 186

Query: 371 FSIPSHKRHLYHLSQTVR 388
             + S +     L + +R
Sbjct: 187 PEMVSDQPERVLLGELIR 204


>gi|71892302|ref|YP_278036.1| GTP-binding protein EngA [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71796408|gb|AAZ41159.1| putative GTP-binding protein [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 471

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 29/185 (15%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE---TDD 282
           G  N+GKS+  N +  +   I    PGTTR+ + + +  +     + DTAG+++    D+
Sbjct: 211 GRPNSGKSTFVNHILGETRMITCSTPGTTRNCIHMPIMYDKQKYILIDTAGVQKNKRIDN 270

Query: 283 IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLYST 334
           + E+  I +TF  ++ A ++L + + N   S +++   +         I +  K DL S 
Sbjct: 271 VAEQISILKTFQIIKTAHVLLFIGDANLGISDQDLHLLQFILNYGKALIIVINKWDLISP 330

Query: 335 YTEE----------------YDHLISSFTGEGLEELINKIKS--ILSNKFKKLPFSIPSH 376
                                 H IS+  G G++ L   IK+  + S   K +  +    
Sbjct: 331 DLRNTTKKNLYEKINFINFTQIHFISALYGNGIKALFQAIKATNLCSRYTKTINTAYLIR 390

Query: 377 KRHLY 381
             H  
Sbjct: 391 TLHAA 395



 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 27/192 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-- 279
           I ++G  N GKS+LFN L     A++++ PG TRD        + +   + DT GI +  
Sbjct: 5   ITLIGQKNVGKSTLFNKLTHTHDALISNYPGLTRDRQYGYFQCKQFKSILIDTGGIDKFC 64

Query: 280 --TDDIVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNI--DFIFIGTKS 329
               + ++     +T L ++ AD++L + +  S          +F K I  +   +  K 
Sbjct: 65  STKTENIQSYVTYQTILAMQEADILLFVMDRQSVGTSINNDIFNFLKKIKKNIFVVINKI 124

Query: 330 DLYS-----------TYTEEYDHLISSFTGEGLEELINKIKSI----LSNKFKKLPFSIP 374
           D              ++  +    IS+  G G++ L+ KI S+    +     K+P S  
Sbjct: 125 DNIPHHIHTMIWDYCSFGIKNIIFISAIHGHGIDNLLEKISSLISKNIFFSNNKIPESHI 184

Query: 375 SHKRHLYHLSQT 386
           ++  +  H+  T
Sbjct: 185 NNTIYQNHIINT 196


>gi|218288620|ref|ZP_03492897.1| GTP-binding protein Era [Alicyclobacillus acidocaldarius LAA1]
 gi|218241277|gb|EED08452.1| GTP-binding protein Era [Alicyclobacillus acidocaldarius LAA1]
          Length = 298

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 25/225 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L NAL  + VAI+++ P TTR+ +      E   +   DT 
Sbjct: 3   YKSGF-VALIGRPNVGKSTLLNALVGQKVAIMSNRPQTTRNRIRGVRTTETSQMIFIDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGT 327
           GI +    + +  +      +   D+I+L+ + +S     E    K         I    
Sbjct: 62  GIHKPKHRLGEYMVDAALKTLNEVDVIVLVVDASSPVHPTEEEIAKQLERVRTPVILALN 121

Query: 328 KSD------LYSTYTEEYD--------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D      L     EEY           IS+  GE ++ L   I+  L    K  P  +
Sbjct: 122 KVDALDDRALVLKRIEEYQALRPFEEYVPISALKGEQVDLLAELIERRLPEGPKYYPDDM 181

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA-ENL-RLASVSL 416
            + +   + +S+ VR   +    ++     ++A E++ R AS +L
Sbjct: 182 ITDQPESFIISEIVREKVLMLTRDEVPHSVMVAVEHMERRASDTL 226


>gi|147677317|ref|YP_001211532.1| GTPase [Pelotomaculum thermopropionicum SI]
 gi|146273414|dbj|BAF59163.1| predicted GTPase [Pelotomaculum thermopropionicum SI]
          Length = 411

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 22/178 (12%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +++   G  +     I I G  NAGKSSL NAL  +++AIV+D+PGTT D +   +++  
Sbjct: 6   LNETPRGSRL----HIAIFGRRNAGKSSLINALTNQNIAIVSDVPGTTTDPVYKSMEILP 61

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPKN--- 319
              V I DTAGI +  ++ +   +K+T   +  ADL++L+ +        E+   K    
Sbjct: 62  VGPVVIIDTAGIDDVGELGQLR-VKKTIGVLNKADLMVLVIDPGQDAGDYELGIIKKAKE 120

Query: 320 --IDFIFIGTKSDLYSTYTEE--------YDHLISSFTGEGLEELINKIKSILSNKFK 367
             +  + +  K DL    T              +S+ T +G+E L  ++      ++ 
Sbjct: 121 QGVPVVGVLNKIDLNPAVTPAELESRLGIKVVPVSAVTRQGIENLKKEMIRSAPKEWT 178


>gi|318042392|ref|ZP_07974348.1| GTP-binding protein Der [Synechococcus sp. CB0101]
          Length = 454

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 16/150 (10%)

Query: 198 FLKNDISSHISQGK--LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L + +  H+   +   GE      ++ I+G  N GKSSL NA+  +  AIV+ I GTTR
Sbjct: 156 DLLDKLVDHLPPTEELTGE---EPIQLAIIGRPNVGKSSLLNAICGEKRAIVSPIRGTTR 212

Query: 256 DVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEI---- 308
           D +   ++ EG+  KI DTAGIR     +   E  GI R+F  +E +D+ +L+ ++    
Sbjct: 213 DTIDTTIEREGHTWKILDTAGIRRKRSVNYGPEFFGINRSFKAIERSDVCVLVIDVLDGV 272

Query: 309 ---NSKKEISFPKNIDFI-FIGTKSDLYST 334
              + +      ++      +  K D    
Sbjct: 273 TEQDQRLAGRIEEDGRACVVVVNKWDAIEK 302



 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 19/161 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L K   AIV D PG TRD    D        K+ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCKSREAIVHDEPGVTRDRTYQDGYWRDRHFKVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIG--TKSDLY 332
           D     E  ++  L +  A + +++ +         +    + +  +   +    K +  
Sbjct: 66  DSEFLPEIREQANLALSEASVAVVIADGQQGLTAADESIAEWLRGHNVPVLLAVNKCESP 125

Query: 333 ST----------YTEEYDHLISSFTGEGLEELINKIKSILS 363
                             + IS+  G G  +L++K+   L 
Sbjct: 126 EAGLSMAAEFWSLGLGEPYPISAIHGAGTGDLLDKLVDHLP 166


>gi|296328716|ref|ZP_06871231.1| GTP-binding protein Era [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296154153|gb|EFG94956.1| GTP-binding protein Era [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 296

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
            ++ +         +++ D+IL L + +             I+       I +  K DL 
Sbjct: 66  HLLGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMNRINENSKKPRILLVNKVDLI 125

Query: 333 STYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +   +              +     S     G+ +L+  +   L +  K  P  + +   
Sbjct: 126 TDEQKEEKIKEIEEKLGKFDKIIFASGMYSFGISQLLEALDPYLEDGVKYYPDDMYTDMS 185

Query: 379 HLYHLSQTVR 388
               +++ VR
Sbjct: 186 TYRIITEIVR 195


>gi|294791925|ref|ZP_06757073.1| GTP-binding protein Era [Veillonella sp. 6_1_27]
 gi|294457155|gb|EFG25517.1| GTP-binding protein Era [Veillonella sp. 6_1_27]
          Length = 307

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 75/199 (37%), Gaps = 22/199 (11%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E  ++G+ + ++G  N GKS+L NAL    +AIV+D   TTR+ +      E   + 
Sbjct: 10  NKNEHFKSGF-VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDEAKQIV 68

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDF 322
             DT G+ +    + +  +      ++  + +L +   N K+       I   K   +  
Sbjct: 69  FMDTPGVHKPKHKLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPV 128

Query: 323 IFIGTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             +  K D                 Y       IS+   E L E++  ++  L    +  
Sbjct: 129 FLVVNKIDTLKKEELLEAIVSYQDAYPFAGVIPISAKDKENLSEILKVLEESLPEGPQYF 188

Query: 370 PFSIPSHKRHLYHLSQTVR 388
           P  + + +     +S  +R
Sbjct: 189 PEDMITDQPERLIISDIIR 207


>gi|260433297|ref|ZP_05787268.1| ribosome-associated GTPase EngA [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417125|gb|EEX10384.1| ribosome-associated GTPase EngA [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 484

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ +
Sbjct: 3   LTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEGRLGDLRFTVIDTAGLED 62

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            TDD ++    + T   V+ AD+ L + +  +
Sbjct: 63  ATDDSLQGRMRRLTERAVDMADVCLFMIDART 94



 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 31/195 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D  G  ++I DTAG+R+
Sbjct: 200 LQVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLRIDWNGTPMRIFDTAGMRK 259

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
                D +EK  +      V+ A+++++L +     E        ++  +    +    K
Sbjct: 260 KAKVQDKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVVVAVNK 319

Query: 329 SD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D                  L           +S+ TG GL+ L   I        +++P
Sbjct: 320 WDVEEHKQEKLRDLKESFERLLPQLRGAPLVTVSAKTGRGLDRLHEAILRAHDVWNRRIP 379

Query: 371 FSIPSHKRHLYHLSQ 385
            +  +  R L  + +
Sbjct: 380 TAALN--RWLTAMVE 392


>gi|160947545|ref|ZP_02094712.1| hypothetical protein PEPMIC_01480 [Parvimonas micra ATCC 33270]
 gi|158446679|gb|EDP23674.1| hypothetical protein PEPMIC_01480 [Parvimonas micra ATCC 33270]
          Length = 298

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I++G+ + I+G SN GKS+L N +  + ++I++  P TTR  L +  +     +   DT 
Sbjct: 4   IKSGF-VTIVGRSNVGKSTLLNRIIGEKISIISSKPQTTRANLKLIYNSLDSQIVFLDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           GI+   + + +  +K +   + + DLIL + ++N +         +I    N+  I +  
Sbjct: 63  GIQNPKNKLGEFMLKESRSSLRDVDLILYMVDVNFEIGELDNLIIDILRKINLPKICVIN 122

Query: 328 KSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D         L S Y      E    IS+  G  +  LI+ IKS L    K     + 
Sbjct: 123 KIDTLNSEELSKLVSKYEGMELFEKIIPISASEGTNVYNLIDCIKSFLPYGPKYYSDDMI 182

Query: 375 SHKRHLYHLSQTVR 388
           + +     +S+ +R
Sbjct: 183 TDQTEREIVSEIIR 196


>gi|124026406|ref|YP_001015521.1| GTP-binding protein Era [Prochlorococcus marinus str. NATL1A]
 gi|123961474|gb|ABM76257.1| GTP-binding protein Era [Prochlorococcus marinus str. NATL1A]
          Length = 313

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 83/198 (41%), Gaps = 24/198 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ I ++G  N GKS+  N    + +AI + I  TTR+ L + L  E   +   D
Sbjct: 9   EDFKSGF-IALIGRPNVGKSTFINKFIGEKIAITSPIAQTTRNRLKVILTNEKSQIIFVD 67

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFI-- 325
           T GI +   ++ +  ++     + + D +L++ E +          ++  +N+    I  
Sbjct: 68  TPGIHKPHHLLGERLVQSAKRSIGDVDAVLVIFEASHSPGRGDAFILNLIRNLKIPVIVA 127

Query: 326 GTKSDLYS---------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
             K DL +                 T       S+ TG+G  ELI++I+  L    +  P
Sbjct: 128 LNKWDLLALSQIKERKKEYLEFLEGTNWPVFCCSALTGQGCIELISEIEETLPFGPQLYP 187

Query: 371 FSIPSHKRHLYHLSQTVR 388
             +       + +++ +R
Sbjct: 188 SDMNCDHPEKFLIAEFIR 205


>gi|257126292|ref|YP_003164406.1| GTP-binding protein Era [Leptotrichia buccalis C-1013-b]
 gi|257050231|gb|ACV39415.1| GTP-binding protein Era [Leptotrichia buccalis C-1013-b]
          Length = 293

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 9/123 (7%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ I I+G  N GKS+L N L K+ VAIV+D  GTTRD +   +++        DT 
Sbjct: 1   MKSGF-ITIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGESQFIFVDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           GI +   ++ +         +EN DLI+ + +   +         E     N   + +  
Sbjct: 60  GIHKPKHLLGEHMTNVALEALENVDLIMFMLDGTQEISTGDMFVNENVRSVNTPIVLVIN 119

Query: 328 KSD 330
           K D
Sbjct: 120 KID 122


>gi|315926702|gb|EFV06081.1| small GTP-binding domain protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 460

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 101/240 (42%), Gaps = 29/240 (12%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL---GEIIRN 218
           + ++ ++       LD   E   +    + ++ D      D   H  +GK     E+ +N
Sbjct: 135 VKEIFNLSVTHNVGLDELYEWLEKFLHEEFLIPDEEENLEDFLEHYEEGKEFQFKEVDQN 194

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             ++ I+G  N GKSSL N L K++ ++V+ I GTT D +   +  +  +++  DTAGIR
Sbjct: 195 HIRVGIVGRVNVGKSSLLNTLVKQERSVVSSIAGTTIDPVNESIVYKDKVIEFVDTAGIR 254

Query: 279 ETDDIV--EKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNI-DFIFIGTK 328
           +   I   E+  + RT   + ++ + LL+ +        + +      K+    I +  K
Sbjct: 255 KRGKIQGLERFALNRTEKILSHSQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNK 314

Query: 329 S----------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                            D +          +S+ +G+ +  L++KI  I  N  +K+  S
Sbjct: 315 WDKSEMDFDKTVKELRLDRFKFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTS 374



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD     + +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           ++  K   K T    + +D+IL L +     +    +              +  K D   
Sbjct: 64  ELF-KNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDNKK 122

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKF 366
                ++            S     GL+EL   ++  L  +F
Sbjct: 123 DEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFLHEEF 164


>gi|307718259|ref|YP_003873791.1| GTP-binding protein [Spirochaeta thermophila DSM 6192]
 gi|306531984|gb|ADN01518.1| GTP-binding protein [Spirochaeta thermophila DSM 6192]
          Length = 290

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 20/197 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
             I+G  ++GKS+L N L  + VAI + +P TTR+ +   +  E   +   DT G  +++
Sbjct: 6   CAIVGRPSSGKSTLLNTLCGRKVAITSPVPQTTRNRIRGIVTEERGQIVFIDTPGYHQSE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
                   ++    ++  D IL L +             E+        +    K D+  
Sbjct: 66  KKFNLFLKEQVIEALKEVDEILYLVDSTRSIGEEEHELIELVKQAGKPVVIALNKIDIPE 125

Query: 334 TYTE------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            + E                 IS++TGEGLE+L  ++        +  P    + +   +
Sbjct: 126 HHAEGMVPLLKAHFPSAPIVKISAYTGEGLEDLKARLFEAAEEGPQLYPEEFYTDQEPRF 185

Query: 382 HLSQTVRYLEMASLNEK 398
            +++ +R   +    E+
Sbjct: 186 RIAEIIREKAIHQTREE 202


>gi|213621470|ref|ZP_03374253.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 146

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 18/147 (12%)

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----- 315
            + ++G  + I DTAG+R+ +D VE+ GI+R + E+E AD +L + +  +   +      
Sbjct: 1   HIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIW 60

Query: 316 ------FPKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  PKN+    +  K+D+       S         +S+ TGEG++ L N +K  + 
Sbjct: 61  PDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQSMG 120

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYL 390
                +     + +RHL  L++   +L
Sbjct: 121 FD-TNMEGGFLARRRHLQALAEAANHL 146


>gi|206603829|gb|EDZ40309.1| GTP-binding protein (EngA) [Leptospirillum sp. Group II '5-way CG']
          Length = 469

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 93/256 (36%), Gaps = 35/256 (13%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGK 211
           L+  +   +  L  I +    ++D   +   D+   +      D     ++ S    Q  
Sbjct: 132 LADFHRHGVAPLIGISAAHGRNVDALLDPFLDLMPDTEDAFPVDPGIRFSEASESDLQAW 191

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           L   I +  ++ ++G  N GKS+L N L  ++  + + IPGTTRD +   +         
Sbjct: 192 LQRRIADPPRVAVIGRPNVGKSTLVNRLLGEERLVTSPIPGTTRDAIDTLVTFRDKTYHF 251

Query: 272 SDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPK 318
            DTAG+R+     +  E     RT   +  +++ ++L               ++ I   +
Sbjct: 252 VDTAGLRKKGKVAEASELYAQIRTDRAILESEIAVVLLSAEDGLTDGDLRIIRQVIDHRR 311

Query: 319 NIDFIFIGTKSD-LYSTYTEEYD-----------------HLISSFTGEGLEELINKIKS 360
               I    K D L S+   +                      S+ TG  + +L   I +
Sbjct: 312 G--LILAWNKWDTLKSSGPSQAPPFRDVRERYPFLSFAPMFGCSARTGFHVSQLFGHIAT 369

Query: 361 ILSNKFKKLPFSIPSH 376
           +    F ++  S  ++
Sbjct: 370 VRDWYFTRITTSELNN 385



 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 66/175 (37%), Gaps = 18/175 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++    I ILG  N GKS+LFN L  +  AIV D PG TRD       +     ++ DT 
Sbjct: 1   MKIPPLIAILGRPNVGKSTLFNRLLSRREAIVEDRPGVTRDRHYSQGTIGRKSFRLVDTG 60

Query: 276 GIRETDDIVEKEGI-KRTFLEVENADLILLLKEIN------SKKEISFPK--NIDFIFIG 326
           GI   DD    E I K+    +E AD ++ + +            I   +      +F  
Sbjct: 61  GILFGDDHPLGESIRKQALFALEEADAVIYVMDGREGYLPVDADVIGRIRRSGKPSVFAV 120

Query: 327 TKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
            K D   T     D            S+  G  ++ L++    ++ +     P  
Sbjct: 121 NKVDTVKTEEVLADFHRHGVAPLIGISAAHGRNVDALLDPFLDLMPDTEDAFPVD 175


>gi|114704716|ref|ZP_01437624.1| GTP-binding protein [Fulvimarina pelagi HTCC2506]
 gi|114539501|gb|EAU42621.1| GTP-binding protein [Fulvimarina pelagi HTCC2506]
          Length = 470

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 18/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS+LFN L  K +A+V D PG TRD    +  L     +I DTAG+  
Sbjct: 2   VSIAIIGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRRPGEGRLMDLSFEIVDTAGLEN 61

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                      ++T   +  ADL L + ++ S          E++       + +  K++
Sbjct: 62  AHSESLSGRMREQTEEAIRIADLSLFMVDVKSGITPEDQDFAEVARRAGGKIVLVANKAE 121

Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362
              +     D           IS+  GEG+ +L + +   L
Sbjct: 122 ARDSDIGYLDAYALGLGDPVAISAEHGEGMGDLRDALVEAL 162



 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 15/153 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  NAGKS+L N +  ++  +     G TRD ++++ +  G   KI DTAG+R 
Sbjct: 199 LRMAIVGRPNAGKSTLVNRMLGEERMLTGPEAGITRDSISVEWEWRGRHFKIFDTAGLRR 258

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
              +    EK  +      ++ A++++++ ++    E                 +     
Sbjct: 259 KARVQEKLEKLSVADALRALKFAEVVVIVLDVTIPFE------------RQDLTIVDLIA 306

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
            E    + +F    + E   ++   L  K ++L
Sbjct: 307 REGRAPVIAFNKWDIAEDRQELAKELREKTERL 339


>gi|149186494|ref|ZP_01864806.1| GTP-binding protein EngA [Erythrobacter sp. SD-21]
 gi|148829721|gb|EDL48160.1| GTP-binding protein EngA [Erythrobacter sp. SD-21]
          Length = 479

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
               ++I+G  N GKS+LFN L  K +A+V D PG TRD    D ++ G    + DTAG 
Sbjct: 5   EKPTVIIIGRPNVGKSTLFNRLIGKKLALVDDQPGVTRDRRMGDAEIAGLEFTVVDTAGW 64

Query: 278 RETDDIVE-KEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTK 328
            + D         K+T + +E AD  L + +  +      +EI+     +++  +    K
Sbjct: 65  EDDDPESLPGRMRKQTEVSLEGADAALFVVDARAGITPLDEEIARWLRSQDVPVVLACNK 124

Query: 329 SD-------LYSTYTEEYDHLI--SSFTGEGLEEL 354
           ++       +  +Y+      +  S+  GEG+ +L
Sbjct: 125 AEGRAAEPGILESYSLGLGEPMGISAEHGEGIADL 159



 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 78/193 (40%), Gaps = 35/193 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG------YLVKISD 273
            K+ I+G  NAGKS+L N L  +D  +     G TRD + +D D           +++ D
Sbjct: 193 LKLAIVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIAVDWDWFDPKANEQREIRLID 252

Query: 274 TAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDF 322
           TAG+R+   +    EK  +      ++ A++++LL +     E         +  +    
Sbjct: 253 TAGMRKRAKVTEKLEKLSVADAKRAIDFAEVVVLLLDATKGLEHQDLKIASQALEEGRAL 312

Query: 323 IFIGTKSDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSN 364
           +    K D+    +  ++                    +S+ TG+GL+ +++    +   
Sbjct: 313 MVAINKWDIAENASYLFNGIREALNEGLSQVRGVPLFAVSAKTGKGLDTMLSAAFELREA 372

Query: 365 KFKKLPFSIPSHK 377
             +++P +  +  
Sbjct: 373 WSRRVPTAALNRW 385


>gi|118474391|ref|YP_892485.1| GTP-binding protein EngA [Campylobacter fetus subsp. fetus 82-40]
 gi|166224321|sp|A0RQK2|DER_CAMFF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|118413617|gb|ABK82037.1| GTP-binding protein EngA [Campylobacter fetus subsp. fetus 82-40]
          Length = 463

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 18/169 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI+++G  N GKSSLFN LAK+ +AI +D+ GTTRD    ++ ++     + D+ G+ ++
Sbjct: 3   KIILVGRPNVGKSSLFNRLAKQRIAITSDVSGTTRDTNKAEIFIDDKNCILIDSGGLDDS 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDL- 331
           +++ +   I  T  E +NAD+I+ + +  +  +    +        N     +  K D  
Sbjct: 63  NELFKNVKIN-TLNEAKNADIIVFMVDGKNFPDEIDKRFFYELSNLNKPIALVVNKVDSK 121

Query: 332 --------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                   ++ +  +Y   +S     G +EL + I  ++     K   S
Sbjct: 122 KDEERSWEFNEFGAKYIFNLSVSHNLGTDELRDWIYKLIPKSKIKADTS 170



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 10/121 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKSSL NAL K+D ++V+ I GTT D +      E  + +  DTAGIR+
Sbjct: 198 IKIGIIGRVNVGKSSLLNALVKEDRSVVSKIAGTTIDPVNESYVYEDRVFEFVDTAGIRK 257

Query: 280 TDDI--VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKS 329
              I  +E+  + RT   +E AD+ LL+ + +        +         +  I +  K 
Sbjct: 258 RGKIEGIERLALHRTEKILEEADIALLVLDASEPLTELDERIAGLGAKFELGLIIVLNKW 317

Query: 330 D 330
           D
Sbjct: 318 D 318


>gi|302390495|ref|YP_003826316.1| iron-only hydrogenase maturation protein HydF [Thermosediminibacter
           oceani DSM 16646]
 gi|302201123|gb|ADL08693.1| iron-only hydrogenase maturation protein HydF [Thermosediminibacter
           oceani DSM 16646]
          Length = 414

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 20/175 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           + +   I I G  NAGKSSL NA+  +D+A+V+ + GTT D +   ++L     V I DT
Sbjct: 11  LASRLHIAIFGRRNAGKSSLINAITNQDIALVSSVAGTTTDPVFKAMELLPIGPVVIIDT 70

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIG 326
           AGI +  ++ E   IK+T+  +   DL +L+ +             E    KNI  + + 
Sbjct: 71  AGIDDEGELGELR-IKKTYQVLNKTDLAVLIIDGGMGVTGYDLEILERIREKNIPVVGVI 129

Query: 327 TKSDLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPF 371
            KSD+     EE +             S+   +G+EEL  +I +   + F + P 
Sbjct: 130 NKSDVAGYTPEEKETWEKRLGLKLVEVSALKRQGIEELKREIINKAPSSFAERPL 184


>gi|325187572|emb|CCA22109.1| ras family GTPase putative [Albugo laibachii Nc14]
 gi|325188870|emb|CCA23399.1| ras family GTPase putative [Albugo laibachii Nc14]
          Length = 535

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 22/167 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E   N +++ ++G +N GKS+LFN L K   AIV ++PGTTRD       + G   ++ D
Sbjct: 45  EARSNQFRLALVGRTNVGKSTLFNRLTKSRRAIVHNVPGTTRDRRFAPGRIAGLEFEVID 104

Query: 274 TAGIRETDDIVEKEGI-KRTFLEVENADLILLLKEIN----------SKKEISFPKNIDF 322
           T G+ +      +EG+  +T + V  ADLI  L +            ++       +   
Sbjct: 105 TGGLEDAPSGSLEEGMLSQTKIAVHEADLIFFLIDGRQGVTPVDSYFARWLRKENASAPI 164

Query: 323 IFIGTK----SDLYSTYTEEY-------DHLISSFTGEGLEELINKI 358
             +  K     D +     E           IS+  GEG+  L++ +
Sbjct: 165 HAVANKLEGYPDRWQDSLNECYQLGMGEAIPISAEHGEGVSLLLDAL 211



 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 17/149 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
            K  I+G  N GKS+L N + ++D  +    PG TRD + +      + +K+ DTAGI  
Sbjct: 242 IKFAIVGRPNVGKSTLLNRIIREDRVLTGPEPGVTRDSIEVPWTFGEHEIKLIDTAGIRR 301

Query: 278 ---RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNIDFIFI 325
              R+  + +E   ++ +F  ++ A ++ ++ +++ KK         +    +    + I
Sbjct: 302 HSKRDHSNQIEDLSVRDSFDAIDKAQVVAIVTDLSEKKLTHMDLTIAQRVIEQGRSLLII 361

Query: 326 GTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
             K D+  T    Y++ +S    +  + L
Sbjct: 362 ANKCDMVKT---SYEYEMSRVKQQLEDSL 387


>gi|89895851|ref|YP_519338.1| hypothetical protein DSY3105 [Desulfitobacterium hafniense Y51]
 gi|89335299|dbj|BAE84894.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 303

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 81/200 (40%), Gaps = 22/200 (11%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +     R+G+ + ++G  NAGKS+L N L  + + I++D P TTR+ +   L  E   +
Sbjct: 4   SEPNRDFRSGF-VTVVGRPNAGKSTLLNQLLGQKILIMSDKPQTTRNKIHCILTEERGQI 62

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPK----NID 321
              DT GI +    + +  +      +   DLIL + +  ++    +E            
Sbjct: 63  VFLDTPGIHKPKHKLGEFMVDSALESLREVDLILYMVDTTAEFGAGEEYILENLKHVKTP 122

Query: 322 FIFIGTKSDLYS-----TYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKK 368
            I +  K DL          ++Y           IS+ TGE  +EL+  I   +      
Sbjct: 123 CILLLNKIDLIEKDKLLKLIKDYSALKDFLAILPISAKTGENKDELLKLIFKEMPQGPMY 182

Query: 369 LPFSIPSHKRHLYHLSQTVR 388
            P    + +   + +++ VR
Sbjct: 183 YPEDEVTDQPERFIMAELVR 202


>gi|309806580|ref|ZP_07700577.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 03V1-b]
 gi|308167000|gb|EFO69182.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 03V1-b]
          Length = 300

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 80/197 (40%), Gaps = 21/197 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             +  ++G+ + ++G  N GKS+L N L  + VAI+++ P TTR+ ++     +   +  
Sbjct: 2   QNKEYKSGF-VALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIF 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKN--IDFIF 324
            DT GI +  + ++    K ++  + + + +L + +           I   KN       
Sbjct: 61  IDTPGIHKPKNNLDDFMDKSSYSALNDVEAVLFMVDPEPAGNGDMFIIDLLKNVACPVFL 120

Query: 325 IGTKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           I  K D         +  +Y +         IS+  G  +++LI  +   L         
Sbjct: 121 IINKIDTVHPDKLLPIIDSYNKLVKFAEIIPISARQGNNIDDLIKTLVKYLPQGPHYYDS 180

Query: 372 SIPSHKRHLYHLSQTVR 388
              + K   + +++ +R
Sbjct: 181 EQLTDKPEYFIVAELIR 197


>gi|255505458|ref|ZP_05346246.3| GTP-binding protein [Bryantella formatexigens DSM 14469]
 gi|255267758|gb|EET60963.1| GTP-binding protein [Bryantella formatexigens DSM 14469]
          Length = 406

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 92/230 (40%), Gaps = 34/230 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKSS+ NA+  +++A+V+++ GTT D +   ++L     V I DT G
Sbjct: 17  NRVHIGFFGRRNAGKSSVVNAVTNQEIAVVSEVRGTTTDPVYKTMELLPVGPVMIIDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
             +   + E   ++RT   +   D+ +L+ +  +           I   K I +I    K
Sbjct: 77  YDDEGSLGELR-VRRTKQVLNKTDVAVLVVDATAGMTEVERELTGIFAKKEIPYIIAYNK 135

Query: 329 SDLYSTYTEEYDH--LISSFTGEGLEELINKI----------KSILSNKFKKLPFSIP-- 374
           +DL     E   H   IS+     + EL  KI          K ++ +  K   F +   
Sbjct: 136 ADLLERVPEAGAHEIYISAREKSNIYELKEKIAALSKEQGEEKRLVGDLVKANDFVVLVT 195

Query: 375 ------SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
                    R +    QT+R L    L      + I    L+    SLGK
Sbjct: 196 PIDSAAPKGRLILPQQQTIRDL----LESGAVSVVIRETELKETLDSLGK 241


>gi|215427036|ref|ZP_03424955.1| GTP-binding protein EngA [Mycobacterium tuberculosis T92]
 gi|289750270|ref|ZP_06509648.1| GTP-binding protein engA [Mycobacterium tuberculosis T92]
 gi|289690857|gb|EFD58286.1| GTP-binding protein engA [Mycobacterium tuberculosis T92]
          Length = 334

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 19/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD +  D    G    + DT G     
Sbjct: 29  VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 88

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
             +++   ++  + +  AD ++L+ +          +   I             K D   
Sbjct: 89  KGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSEK 148

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  L+S    E  H IS+  G G+ +L++ + + L    +    S
Sbjct: 149 GESDAAALWSLGLGE-PHAISAMHGRGVADLLDGVLAALPEVGESASAS 196



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 12/179 (6%)

Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAG 231
           +A   +S      +  S      +  L + + + + +         G + + ++G  N G
Sbjct: 152 DAAALWSLGLGEPHAISAMHGRGVADLLDGVLAALPEVGESASASGGPRRVALVGKPNVG 211

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEG 288
           KSSL N LA    ++V +  GTT D +   ++L G + +  DTAG+R         E   
Sbjct: 212 KSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRRKVGQASGHEFYA 271

Query: 289 IKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYSTYTEEY 339
             RT   +++A++ ++L + +            +        +    K DL      E 
Sbjct: 272 SVRTHAAIDSAEVAIVLIDASQPLTEQDLRVISMVIEAGRALVLAYNKWDLVDEDRREL 330


>gi|283955809|ref|ZP_06373300.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792764|gb|EFC31542.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 460

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 29/240 (12%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL---GEIIRN 218
           + ++ ++       LD   E   +    + ++ D      D   H  +GK     E+ +N
Sbjct: 135 VKEIFNLSVTHNVGLDELYEWLGKFLHEEFLIPDEEENLEDFLEHYEEGKEFQFKEVDQN 194

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++  DTAGIR
Sbjct: 195 HIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIR 254

Query: 279 ETDDIV--EKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNI-DFIFIGTK 328
           +   I   E+  + RT   + ++ + LL+ +        + +      K+    I +  K
Sbjct: 255 KRGKIQGLERFALNRTEKILSHSQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNK 314

Query: 329 S----------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                            D +          +S+ +G+ +  L++KI  I  N  +K+  S
Sbjct: 315 WDKSEMDFDKTVKELRLDRFKFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTS 374



 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD    ++ +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTEIHIHSKKAMLIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           ++  K   K T    + +D+IL L +     +    +              +  K D   
Sbjct: 64  ELF-KNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDNKK 122

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKF 366
                ++            S     GL+EL   +   L  +F
Sbjct: 123 DEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLGKFLHEEF 164


>gi|238019235|ref|ZP_04599661.1| hypothetical protein VEIDISOL_01099 [Veillonella dispar ATCC 17748]
 gi|237863934|gb|EEP65224.1| hypothetical protein VEIDISOL_01099 [Veillonella dispar ATCC 17748]
          Length = 299

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 76/199 (38%), Gaps = 22/199 (11%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E  ++G+ + ++G  N GKS+L NAL    +AIV+D   TTR+ +      E   + 
Sbjct: 2   NKNEHFKSGF-VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDEAKQIV 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDF 322
             DT G+ +    + +  +      ++  + +L +   N K+       I   K   +  
Sbjct: 61  FMDTPGVHKPKHKLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPV 120

Query: 323 IFIGTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             +  K D                 Y       IS+   E L E++N ++  L    +  
Sbjct: 121 FLVVNKIDTLKKEELLEAIVSYQDAYPFAGVIPISAKDKENLNEVLNVLEETLPEGPQYF 180

Query: 370 PFSIPSHKRHLYHLSQTVR 388
           P  + + +     +S  VR
Sbjct: 181 PEDMITDQPERLIISDIVR 199


>gi|209545222|ref|YP_002277451.1| GTP-binding protein EngA [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532899|gb|ACI52836.1| small GTP-binding protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 479

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 18/163 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           +VI G  N GKS+LFN L  +  A+V D PG TRD    +  + G  V++ DTAG+ E  
Sbjct: 16  VVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEAETVMRGRRVRLVDTAGLEEAA 75

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D +       +   V  ADL+L   +  +               +    + I  K++  
Sbjct: 76  ADTLYGRMRASSESAVAQADLVLFCIDTRAGITPADEHFAAWLRRQGRPVLLIANKAEGR 135

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                              IS+  GEGL +L+ +I   L  + 
Sbjct: 136 QGAAAAMEAFALGLGTPLAISAEHGEGLSDLMGEIADRLPPQA 178



 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 81/198 (40%), Gaps = 29/198 (14%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           + +  +      ++ I+G  NAGKS+L N L  ++  I    PG TRD +T+ L  E   
Sbjct: 200 EAEEDDRPVGPLRLAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSVTVLLHDEHGP 259

Query: 269 VKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK---- 318
           +++ DTAG+R     ++ +EK  +  T   ++ A++++L  +      ++++   +    
Sbjct: 260 IQLVDTAGLRRRARIEESLEKMSVSATIEALKMAEVVVLTLDATLGVHEQDLQIARLIER 319

Query: 319 -NIDFIFIGTKSDLY------------------STYTEEYDHLISSFTGEGLEELINKIK 359
                +    K D                    +          S+ TG G+ +L+  ++
Sbjct: 320 EGRCCVLALNKWDAVEDRIATRQAISDRIETSLAQMRGIPVVSFSALTGAGVNKLLPVVR 379

Query: 360 SILSNKFKKLPFSIPSHK 377
              +   K++P    +  
Sbjct: 380 RAHATWNKRVPTGALNRW 397


>gi|33866147|ref|NP_897706.1| GTP-binding protein Era [Synechococcus sp. WH 8102]
 gi|33639122|emb|CAE08128.1| GTP-binding protein ERA homolog [Synechococcus sp. WH 8102]
          Length = 311

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 24/219 (10%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
            E  R+G+ I ++G  N GKS+L N L  + VAI + +  TTR+ L   L  E   + + 
Sbjct: 7   SENHRSGF-IALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAILTTEDAQMVLV 65

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFI- 325
           DT GI +   ++ +  ++     +   DL++LL E   +        +   +      + 
Sbjct: 66  DTPGIHKPHHLLGERLVQSARSAIGEVDLVVLLLEGCERPGRGDAFIVKLLRQQPLPVLV 125

Query: 326 -GTKSD-LYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKL 369
              K D L      E +              H  S+ +GEG   L + + + L    +  
Sbjct: 126 ALNKWDKLPEDRQAEAEAAYGELLKETAWPIHRCSALSGEGCSALSSAMAAQLPLGPQLY 185

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           P  + S +     + + +R   +    E+      +  +
Sbjct: 186 PPEMVSDQPERVLMGELIREQVLLHTREEIPHSVAVTID 224


>gi|227529166|ref|ZP_03959215.1| GTP-binding protein Era [Lactobacillus vaginalis ATCC 49540]
 gi|227350891|gb|EEJ41182.1| GTP-binding protein Era [Lactobacillus vaginalis ATCC 49540]
          Length = 301

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 85/214 (39%), Gaps = 24/214 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+  N +  + VAI++++  TTR+ +          +   DT 
Sbjct: 6   YKSGF-VALIGRPNVGKSTFLNYVVGQKVAIMSNVAQTTRNKIQGIYTTNDAQIVFIDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGT 327
           G+ +    +     K T   ++  D +L L      +       I+  KN       +  
Sbjct: 65  GVHKPQTKLGDFMEKSTLSALDEVDAVLYLVSATEDRGPGDDFIINRLKNVKQPIFLVIN 124

Query: 328 KSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D         + + Y +       + IS+  G  +  LINK+   L N  +  P    
Sbjct: 125 KIDQVNPNDLPEITAQYKDALPFAGIYPISALQGNNVSPLINKLIETLPNGPQYYPSDQI 184

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           S     + +++ +R  ++  L  ++     +A +
Sbjct: 185 SDHPERFVIAEMIRE-KVFELTRQEVPHS-VAID 216


>gi|56697187|ref|YP_167551.1| GTP-binding protein EngA [Ruegeria pomeroyi DSS-3]
 gi|81676219|sp|Q5LR04|DER_SILPO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|56678924|gb|AAV95590.1| GTP-binding protein EngA [Ruegeria pomeroyi DSS-3]
          Length = 487

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
             + I+G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+  
Sbjct: 3   LTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGQARLGDLRFTVIDTAGLET 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            TDD ++    + T   V+ AD+ L + +  +
Sbjct: 63  ATDDSLQGRMRRLTERAVDMADICLFMIDARA 94



 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 96/256 (37%), Gaps = 35/256 (13%)

Query: 152 GELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK 211
           GE   L  +  + L  + + +         ++++  + ++     + L  +         
Sbjct: 139 GEPIRLSAEHGEGLNELYAVL-----MPLADEMEQQAEEQAPETDVDLDPEDEDGEEVAA 193

Query: 212 LGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              I R    ++ ++G  NAGKS+L N +  +D  +     G TRD +++ +D     ++
Sbjct: 194 PHAITREKPLQVAVVGRPNAGKSTLINRILGEDRLLTGPEAGITRDAISLQIDWNDTPMR 253

Query: 271 ISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF----- 322
           I DTAG+R+   +    EK  +      V+ A+++++L +     E    +  D      
Sbjct: 254 IFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREG 313

Query: 323 ----------IFIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSI 361
                          K D      E ++             +S+ TG GLE L + I   
Sbjct: 314 RAVVIAVNKWDVEENKQDKLRELKESFERLLPQLRGAPLVTVSAKTGRGLERLHDAILRA 373

Query: 362 LSNKFKKLPFSIPSHK 377
                +++P +  +  
Sbjct: 374 HEVWNRRIPTAALNRW 389


>gi|259503181|ref|ZP_05746083.1| GTP-binding protein Era [Lactobacillus antri DSM 16041]
 gi|259168838|gb|EEW53333.1| GTP-binding protein Era [Lactobacillus antri DSM 16041]
          Length = 301

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L N +  + VAI++++  TTR+ +      +   +   DT 
Sbjct: 6   YKSGF-VALIGRPNVGKSTLLNYIVGQKVAIMSNVAQTTRNKIQGIYTSKDAQIIFIDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGT 327
           G+ +    +     + T   ++  D I+ +     K+       I   K        +  
Sbjct: 65  GVHKPATKLGDFMERSTLSALDEVDAIVYVVSATEKRGPGDNFIIDRLKQVKQPVYLVVN 124

Query: 328 KS---------DLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K          D+ + Y +         +S+  G  + ELIN++ + L +  +  P    
Sbjct: 125 KIDQVHPNDLPDIVAQYKDALPFKGIIPVSALQGNNVNELINELVAGLPHGPQYYPADQI 184

Query: 375 SHKRHLYHLSQTVR 388
           S     + +++ +R
Sbjct: 185 SDHPERFVIAEMIR 198


>gi|21263583|sp|Q8YYD8|ERA_NOSS1 RecName: Full=GTPase Era
          Length = 324

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 80/210 (38%), Gaps = 22/210 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L  + +AI + +  TTR+ L   +      +   DT GI +  
Sbjct: 35  IGIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLRGIVTTPEAQLIFVDTPGIHKPH 94

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSK--KEISFPKNIDFIFIGTKSDLYS 333
             + +  +K   L +E+ D++L + +         +   ++        I    K D   
Sbjct: 95  HQLGEVLVKNAKLAIESVDVVLFVVDGAVACGAGDRFIADLLIHSKTPVILGINKVDQQP 154

Query: 334 TYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             +++ D                 S+ TG  L +L   +   L +     P  + + +  
Sbjct: 155 PDSQKIDESYQQLASAYQWPTVKFSAKTGAELPQLQELLVEHLEHGPYYYPPDLVTDQPE 214

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            + + + +R   +    E+      IA +L
Sbjct: 215 RFIMGELIREQILLLTREEVPHSVAIAIDL 244


>gi|332638283|ref|ZP_08417146.1| GTPase Era [Weissella cibaria KACC 11862]
          Length = 302

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 77/188 (40%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  + +AI++    TTR+ +      +   +   DT GI +  
Sbjct: 11  VALVGRPNVGKSTLLNKMIGEKIAIMSPKAQTTRNKIQGIYTTDEGQIVFMDTPGIHKPH 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSDLYS 333
           + +    +K     +  AD++  L   +  +       I+  K+       I  K DL +
Sbjct: 71  NSLGDFMVKTAMSALREADMVWFLVNADEPRGAGDDFIINRLKDTKTPVYLIINKIDLVN 130

Query: 334 -----TYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                T  ++Y           IS+  G+G+ EL++     ++   +  P    +     
Sbjct: 131 PADLLTIIDDYRQQMEFAEIFPISALKGDGVPELLDFAMDKMAEGPQYYPADQITDHPER 190

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 191 FIMSELIR 198


>gi|259500586|ref|ZP_05743488.1| GTP-binding protein Era [Lactobacillus iners DSM 13335]
 gi|302191277|ref|ZP_07267531.1| GTP-binding protein Era [Lactobacillus iners AB-1]
 gi|309805224|ref|ZP_07699276.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 09V1-c]
 gi|309810245|ref|ZP_07704090.1| ribosome biogenesis GTPase Era [Lactobacillus iners SPIN 2503V10-D]
 gi|312871783|ref|ZP_07731871.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 3008A-a]
 gi|312872928|ref|ZP_07732988.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2062A-h1]
 gi|312874162|ref|ZP_07734196.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2052A-d]
 gi|312875582|ref|ZP_07735583.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2053A-b]
 gi|315653578|ref|ZP_07906498.1| GTP-binding protein Era [Lactobacillus iners ATCC 55195]
 gi|325912100|ref|ZP_08174498.1| ribosome biogenesis GTPase Era [Lactobacillus iners UPII 143-D]
 gi|325912581|ref|ZP_08174964.1| ribosome biogenesis GTPase Era [Lactobacillus iners UPII 60-B]
 gi|329920169|ref|ZP_08277000.1| ribosome biogenesis GTPase Era [Lactobacillus iners SPIN 1401G]
 gi|259167970|gb|EEW52465.1| GTP-binding protein Era [Lactobacillus iners DSM 13335]
 gi|308165458|gb|EFO67689.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 09V1-c]
 gi|308169517|gb|EFO71565.1| ribosome biogenesis GTPase Era [Lactobacillus iners SPIN 2503V10-D]
 gi|311088836|gb|EFQ47279.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2053A-b]
 gi|311090232|gb|EFQ48642.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2052A-d]
 gi|311091450|gb|EFQ49834.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2062A-h1]
 gi|311092725|gb|EFQ51081.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 3008A-a]
 gi|315488940|gb|EFU78582.1| GTP-binding protein Era [Lactobacillus iners ATCC 55195]
 gi|325476050|gb|EGC79218.1| ribosome biogenesis GTPase Era [Lactobacillus iners UPII 143-D]
 gi|325478002|gb|EGC81131.1| ribosome biogenesis GTPase Era [Lactobacillus iners UPII 60-B]
 gi|328936623|gb|EGG33067.1| ribosome biogenesis GTPase Era [Lactobacillus iners SPIN 1401G]
          Length = 300

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 80/197 (40%), Gaps = 21/197 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             +  ++G+ + ++G  N GKS+L N L  + VAI+++ P TTR+ ++     +   +  
Sbjct: 2   QNKEYKSGF-VALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIF 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEISFPKN--IDFIF 324
            DT GI +  + ++    K ++  + + + +L + +           I   KN       
Sbjct: 61  IDTPGIHKPKNNLDDFMDKSSYSALNDVEAVLFMVDPEPAGKGDMFIIDLLKNVACPVFL 120

Query: 325 IGTKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           I  K D         +  +Y +         IS+  G  +++LI  +   L         
Sbjct: 121 IINKIDTVHPDKLLPIIDSYNKLVKFAEIIPISARQGNNIDDLIKTLVKYLPQGPHYYDS 180

Query: 372 SIPSHKRHLYHLSQTVR 388
              + K   + +++ +R
Sbjct: 181 EQLTDKPEYFIVAELIR 197


>gi|57237441|ref|YP_178454.1| GTP-binding protein EngA [Campylobacter jejuni RM1221]
 gi|86149131|ref|ZP_01067363.1| GTPase family protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597436|ref|ZP_01100671.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562044|ref|YP_002343823.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|26006744|sp|Q9PIB6|DER_CAMJE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|81819560|sp|Q5HW81|DER_CAMJR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|57166245|gb|AAW35024.1| GTPase family protein [Campylobacter jejuni RM1221]
 gi|85840489|gb|EAQ57746.1| GTPase family protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190497|gb|EAQ94471.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359750|emb|CAL34536.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284925657|gb|ADC28009.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315057809|gb|ADT72138.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni S3]
          Length = 460

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 106/241 (43%), Gaps = 31/241 (12%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL--NDILFLKNDIS--SHISQGKLGEIIR 217
           + ++ ++       LD    E ++ F  +E L  ++   L++ +       + +  E+ +
Sbjct: 135 VKEIFNLSVTHNVGLD-ELYEWLEKFLHEEFLIPDEEENLEDFLEYYEEGKEFQFKEVDQ 193

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++  DTAGI
Sbjct: 194 NHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGI 253

Query: 278 RETDDIV--EKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNI-DFIFIGT 327
           R+   I   E+  + RT   + ++ + LL+ +        + +      K+    I +  
Sbjct: 254 RKRGKIQGLERFALNRTEKILSHSQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLN 313

Query: 328 KS----------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           K                 D +          +S+ +G+ +  L++KI  I  N  +K+  
Sbjct: 314 KWDKSEMDFDKTVKELRLDRFKFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQT 373

Query: 372 S 372
           S
Sbjct: 374 S 374



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD     + +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           ++  K   K T    + +D+IL L +     +    +              +  K D   
Sbjct: 64  ELF-KNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDNKK 122

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKF 366
                ++            S     GL+EL   ++  L  +F
Sbjct: 123 DEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFLHEEF 164


>gi|317124960|ref|YP_004099072.1| ribosome-associated GTPase EngA [Intrasporangium calvum DSM 43043]
 gi|315589048|gb|ADU48345.1| ribosome-associated GTPase EngA [Intrasporangium calvum DSM 43043]
          Length = 494

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 32/209 (15%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           + L+ +L +   +S+H +  + G       ++ ++G  N GKSSL N LA  +  +V  +
Sbjct: 210 DALDAVLEVLPQVSAHGAYAQGGPR-----RVALVGRPNVGKSSLLNKLAGSERVVVDSV 264

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKE 307
            GTTRD +   ++L G   +  DTAGIR         +     RT   +E A++ ++L +
Sbjct: 265 AGTTRDPVDELIELAGTTWRFVDTAGIRRRVHQTRGADFYASLRTQTALEKAEVAVVLID 324

Query: 308 INSK--------KEISFPKNIDFIFIGTKSD---------LYSTYTEEYDH-------LI 343
                        +         +    K D         L     +E           I
Sbjct: 325 AEEPIAEQDVRVVQQVIDAGRALVVAYNKWDTLDEERRYYLEREIEKELVQVPWAARVNI 384

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           S+ TG  L+ L+  ++  L +   ++P  
Sbjct: 385 SAKTGRHLDRLVPALEKALESWDTRIPTG 413



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N + ++  A+V D+PG TRD ++ + +  G    + DT G     
Sbjct: 62  VAVIGRPNVGKSSLVNRILRRREAVVEDVPGVTRDRVSYEGEWAGRRFTVVDTGGWESDV 121

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLYS 333
             +     ++  + ++ AD+++ + +          S   +        + I  K D   
Sbjct: 122 TGIHLRVAEQAEIAIDLADVVMFVVDATVGATDDDESVVRLLRRSGKPVVLIANKVDDQR 181

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSN 364
              +               S+  G G  + ++ +  +L  
Sbjct: 182 GEADAAALWNLGLGQPWPVSALHGRGSGDALDAVLEVLPQ 221


>gi|312143158|ref|YP_003994604.1| small GTP-binding protein [Halanaerobium sp. 'sapolanicus']
 gi|311903809|gb|ADQ14250.1| small GTP-binding protein [Halanaerobium sp. 'sapolanicus']
          Length = 409

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 20/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  NAGKSSL N+L  + +A+V+++PGTT D +   ++L     V + DTAG
Sbjct: 8   NRPHIAVFGRRNAGKSSLINSLCNQKLALVSEVPGTTTDPVYKAMELLPLGPVMMIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           I ++ D+ E   +K+++  +   DL +L+ +   +      K        N   + +  K
Sbjct: 68  IDDSGDLGEMR-VKKSYEIIRKTDLAVLVIDNQVEFGKYEQKLLDNFNKTNTPVVAVINK 126

Query: 329 SDL-------YSTYTEEYDHLI---SSFTGEGLEELINKIKSILSNKFKK 368
            DL             EYD      S+ +G+G+EEL +KI   +    ++
Sbjct: 127 IDLAFDKTEVVDKLQREYDLKPILLSAESGQGIEELRDKIAEKMPQDTEE 176


>gi|291542200|emb|CBL15310.1| GTP-binding protein Era [Ruminococcus bromii L2-63]
          Length = 305

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSS+ N L  + +AIV+  P TTR+ +T  L    Y +   DT G+ +  
Sbjct: 13  IAIVGRPNVGKSSILNRLMGQKIAIVSSKPQTTRNRITGVLTQGEYQLVFFDTPGMHKPK 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPKN-----IDFIFIGTKSDLYS 333
             + K  ++     V   D  +L+ E   +    E++  +      +  I    K D   
Sbjct: 73  TSLGKYMVRSVNESVGGVDCCMLVVEAGKEPGDTELNLIEKFKSMEMPAILAINKIDTLK 132

Query: 334 TYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E              +    +S+  G G+ EL++++K               + +  
Sbjct: 133 EKEELMKQIARYSLLYDFDAVVPVSAQDGNGMNELLDELKKQAGEGGHFFDDDTLTDQPE 192

Query: 380 LYHLSQTVR 388
              +++ +R
Sbjct: 193 RVIVAEIIR 201


>gi|262038068|ref|ZP_06011473.1| GTP-binding protein Era [Leptotrichia goodfellowii F0264]
 gi|261747888|gb|EEY35322.1| GTP-binding protein Era [Leptotrichia goodfellowii F0264]
          Length = 304

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 9/130 (6%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
            EI+++G+ I I+G  N GKS+L N L K+ VAIV+D  GTTRD +   +++        
Sbjct: 5   SEIMKSGF-IAIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGENQYIFV 63

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIF 324
           DT GI +   ++ +   +     + N DLI+ + +   +         E         I 
Sbjct: 64  DTPGIHKPKHLLGEHMTEIALETLSNVDLIMFMLDGTKEISTGDIFVNEHIRETKTPVIV 123

Query: 325 IGTKSDLYST 334
           +  K D  S 
Sbjct: 124 VINKIDKMSN 133


>gi|189425186|ref|YP_001952363.1| GTP-binding protein Era [Geobacter lovleyi SZ]
 gi|259645944|sp|B3E422|ERA_GEOLS RecName: Full=GTPase Era
 gi|189421445|gb|ACD95843.1| GTP-binding protein Era [Geobacter lovleyi SZ]
          Length = 296

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +  V+D P TTR+V+   L  E   +   DT GI    
Sbjct: 11  VSIIGRPNVGKSTLLNRILGEKIVAVSDKPQTTRNVIRGILSDETSQIVFVDTPGIHTAR 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------DFIFIGTKSD----- 330
             + +  +      V   DL+LL+ +   K E +F K+I          +  K D     
Sbjct: 71  TRINRAMVDAAMTVVTGIDLMLLVVDATQKIEETFIKDICSKAGAPIYLVLNKIDQVTPK 130

Query: 331 -----LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                +   YT  YD      IS+ +G  +E L++ ++  L       P  I +     +
Sbjct: 131 EKLFTVIEGYTRLYDFPEIIPISAQSGSNIERLVDLVREHLPEGEALFPDDILTDLPEKF 190

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 191 IVAELIR 197


>gi|162149029|ref|YP_001603490.1| GTP-binding protein EngA [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787606|emb|CAP57202.1| GTP-binding protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 479

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 18/163 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           +VI G  N GKS+LFN L  +  A+V D PG TRD    +  + G  V++ DTAG+ E  
Sbjct: 16  VVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEAETVMRGRRVRLVDTAGLEEAA 75

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
            D +       +   V  ADL+L   +  +               +    + I  K++  
Sbjct: 76  ADTLYGRMRASSESAVAQADLVLFCIDTRAGITPADEHFAAWLRRQGRPVLLIANKAEGR 135

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                              IS+  GEGL +L+ +I   L  + 
Sbjct: 136 QGAAAAMEAFALGLGTPLAISAEHGEGLSDLMGEIADRLPPQA 178



 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 78/198 (39%), Gaps = 29/198 (14%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           +    +      ++ I+G  NAGKS+L N L  ++  I    PG TRD +T+ L  E   
Sbjct: 200 EADEDDRPVGPLRLAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSVTVLLHDEHGP 259

Query: 269 VKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK---- 318
           +++ DTAG+R    I    EK  +  T   ++ A++++L  +      ++++   +    
Sbjct: 260 IQLVDTAGLRRRGRIEESLEKMSVSATIEALKMAEVVVLTLDATLGVHEQDLQIARLIER 319

Query: 319 -NIDFIFIGTKSDLY------------------STYTEEYDHLISSFTGEGLEELINKIK 359
                +    K D                    +          S+ TG G+ +L+  ++
Sbjct: 320 EGRCCVLALNKWDAVEDRIATRQAISDRIETSLAQMRGIPVVSFSALTGAGVNKLLPVVR 379

Query: 360 SILSNKFKKLPFSIPSHK 377
              +   K++P    +  
Sbjct: 380 RAHATWNKRVPTGALNRW 397


>gi|258541745|ref|YP_003187178.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-01]
 gi|256632823|dbj|BAH98798.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-01]
 gi|256635880|dbj|BAI01849.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-03]
 gi|256638935|dbj|BAI04897.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-07]
 gi|256641989|dbj|BAI07944.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-22]
 gi|256645044|dbj|BAI10992.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-26]
 gi|256648099|dbj|BAI14040.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-32]
 gi|256651152|dbj|BAI17086.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654143|dbj|BAI20070.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-12]
          Length = 300

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   ++G  NAGKS+L N +A   ++IV+    TTR  +   L      + + DT G
Sbjct: 7   RCGF-AALVGAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRVLGILMRGHSQILLVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
           I      +++  +   +   E+AD+ LLL +  S          E           +  K
Sbjct: 66  IFRPRRKLDRAMVAAAWTGAEDADITLLLVDARSGLTEAVQTIIERLAETKRKVWLVLNK 125

Query: 329 SDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +DL                   E+  ++S+ TG G+E+L++K+ + L       P    +
Sbjct: 126 TDLVPATALLPLTASITEKLPVEHVFMVSARTGNGVEDLLDKLAASLPEGPYLYPEDDLT 185

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++ VR       +E+
Sbjct: 186 DLPDRLLAAELVREQIFMQTHEE 208


>gi|258542805|ref|YP_003188238.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-01]
 gi|256633883|dbj|BAH99858.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-01]
 gi|256636942|dbj|BAI02911.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-03]
 gi|256639995|dbj|BAI05957.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-07]
 gi|256643051|dbj|BAI09006.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-22]
 gi|256646106|dbj|BAI12054.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-26]
 gi|256649159|dbj|BAI15100.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-32]
 gi|256652146|dbj|BAI18080.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655203|dbj|BAI21130.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-12]
          Length = 472

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +VI G  N GKS+LFN L  +  A+V D PG TRD       + G  V++ DTAG+ E  
Sbjct: 15  VVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEGVALIRGRYVRLIDTAGLEEAA 74

Query: 282 DIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330
                      +   V  ADL+L   +  +          +    +N   + I  KS+  
Sbjct: 75  PESLFGRMRFSSESAVREADLVLFCVDARAGITPADEHFAQWIRRQNRPVLLIANKSEGR 134

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKSIL 362
           L +    E           +S+  GEG+ +L+ +I   L
Sbjct: 135 LGAASAMEAYALGLGEPLALSAEHGEGVTDLMWEIADRL 173



 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 86/234 (36%), Gaps = 35/234 (14%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           + +G+         ++ I+G  NAGKS+L NAL  ++  I     G TRD + + L    
Sbjct: 193 VEEGEEPPRPIGPLRVAIVGRPNAGKSTLMNALLGEERMITGPEAGLTRDSIAVTLKDGD 252

Query: 267 YLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-- 318
              +I DTAG+R+    D+ +EK  +      ++ A++ +L+ +      ++++   +  
Sbjct: 253 DTFEIVDTAGLRKKARIDESLEKMSVSAAIEALKMAEVAVLVLDATLGVHEQDLQIARLI 312

Query: 319 ---NIDFIFIGTKSDLYSTYTEEYD------------------HLISSFTGEGLEELINK 357
                  +    K D     T   +                     S+ TG  + +L+  
Sbjct: 313 EREGRACVLALNKWDAVQDRTATRNAILDRLSISLAQMRGVPVVTFSALTGASIHKLLPA 372

Query: 358 IKSILSNKFKKLPFSIPSH------KRHLYHLSQTVRYLEMASLNEKDCGLDII 405
           ++   +    ++P    +       +RH   L Q  R         K      +
Sbjct: 373 VRDAWTVWNARVPTGALNRWFEEMLERHQPPLVQGRRLKLRYITQVKSRPPTFV 426


>gi|309803256|ref|ZP_07697353.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 11V1-d]
 gi|309807561|ref|ZP_07701513.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 01V1-a]
 gi|308164764|gb|EFO67014.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 11V1-d]
 gi|308169167|gb|EFO71233.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 01V1-a]
          Length = 300

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 80/197 (40%), Gaps = 21/197 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             +  ++G+ + ++G  N GKS+L N L  + VAI+++ P TTR+ ++     +   +  
Sbjct: 2   QNKEYKSGF-VALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIF 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEISFPKN--IDFIF 324
            DT GI +  + ++    K ++  + + + +L + +           I   KN       
Sbjct: 61  IDTPGIHKPKNNLDDFMDKSSYSALNDVEAVLFMVDPEPAGKGDMFIIDLLKNVACPVFL 120

Query: 325 IGTKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           I  K D         +  +Y +         IS+  G  +++LI  +   L         
Sbjct: 121 IINKIDTVHPDKLLPIIDSYNKLVKFAEIIPISARQGNNIDDLIKTLVKYLPEGPHYYDS 180

Query: 372 SIPSHKRHLYHLSQTVR 388
              + K   + +++ +R
Sbjct: 181 EQLTDKPEYFIVAELIR 197


>gi|300871622|ref|YP_003786495.1| GTP-binding protein [Brachyspira pilosicoli 95/1000]
 gi|300689323|gb|ADK31994.1| GTP-binding protein [Brachyspira pilosicoli 95/1000]
          Length = 404

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 20/161 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAG 276
           N   I I G  N GKSS+ NA+A +DVAIV+D  GTT D +   +++       I DTAG
Sbjct: 20  NRTHIAIFGRRNVGKSSIINAIANQDVAIVSDTAGTTTDPVKKAIEINKIGACTIVDTAG 79

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
             +  ++ E   IKRT   +E+AD+ LL+ + N    +   K         I  + +  K
Sbjct: 80  FDDEGELGELR-IKRTKKIMESADIALLVFDANFNDYLLELKWKNELTSLEIPIVAVLNK 138

Query: 329 SDLYSTYTEEYDHLISSF----------TGEGLEELINKIK 359
            DL + Y +   ++   F              +++L+  IK
Sbjct: 139 IDLNNNYKQIEQNIKDVFDLETVSISANNKINIDKLVEAIK 179


>gi|260890127|ref|ZP_05901390.1| hypothetical protein GCWU000323_01289 [Leptotrichia hofstadii
           F0254]
 gi|260860150|gb|EEX74650.1| GTP-binding protein Era [Leptotrichia hofstadii F0254]
          Length = 293

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ I I+G  N GKS+L N L K+ VAIV+D  GTTRD +   +++        DT 
Sbjct: 1   MKSGF-ITIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGESQFIFVDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           GI +   ++ +         +EN DLI+ + +   +         E         + +  
Sbjct: 60  GIHKPKHLLGEHMTNVALEALENVDLIMFMLDGTQEISTGDMFVNENVRSVKTPIVLVIN 119

Query: 328 KSDLYS 333
           K D  S
Sbjct: 120 KIDKMS 125


>gi|205355964|ref|ZP_03222732.1| putative GTP binding protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346088|gb|EDZ32723.1| putative GTP binding protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 460

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 104/243 (42%), Gaps = 35/243 (14%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG------EI 215
           + ++ ++       LD    E ++ F  +E L      + ++   +   + G      E+
Sbjct: 135 VKEIFNLSVTHNVGLD-ELYEWLEKFLHEEFLISDE--EENLEDFLEYYEEGKEFQFKEV 191

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            +N  ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++  DTA
Sbjct: 192 DQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTA 251

Query: 276 GIRETDDIV--EKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNI-DFIFI 325
           GIR+   I   E+  + RT   + ++ + LL+ +        + +      K+    I +
Sbjct: 252 GIRKRGKIQGLERFALNRTEKILSHSQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIV 311

Query: 326 GTKS----------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             K                 D +          +S+ +G+ +  L++KI  I  N  +K+
Sbjct: 312 LNKWDKSEMDFDKTVKELRLDRFKFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKI 371

Query: 370 PFS 372
             S
Sbjct: 372 QTS 374



 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD    ++ +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTEIHINSKKAMLIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           ++  K   K T    + +D+IL L +     +    +              +  K D   
Sbjct: 64  ELF-KNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDNKK 122

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKF 366
                ++            S     GL+EL   ++  L  +F
Sbjct: 123 DEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFLHEEF 164


>gi|315604206|ref|ZP_07879272.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313912|gb|EFU61963.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 512

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 19/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 79  LAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYPAEWAGRNFTLVDTGGWEIDV 138

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
             +++   ++  + V+ AD ++L+ +             E+   K+   I    K D   
Sbjct: 139 KGLDRSVAEQAEIAVDLADAVVLVLDATVGVTASDERIVEMLRSKDKPIILAANKVDSAL 198

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                  L+S    E  H IS+  G G  +L++ +   L  +
Sbjct: 199 QEADAAYLWSLGLGE-PHPISALHGRGTGDLLDVVMETLPTE 239



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 27/179 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL NALA     +V ++ GTTRD +   ++L+       DTAGIR  
Sbjct: 253 RVALVGRPNVGKSSLLNALAGGHRVVVNELAGTTRDPVDELVELDSRQWWFVDTAGIRRK 312

Query: 281 DDIV---EKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKS 329
                  +     RT   +E A++ L+L +  +          +         + +  K 
Sbjct: 313 MHRTTGADYYASIRTQAAIEKAEVALVLIDGAAPLTEQDVRVIQQVIDAGRALVVVTNKW 372

Query: 330 DLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL     ++                    +++ TG     ++  + + L     ++P  
Sbjct: 373 DLVDEDRQKEIKSELERELVQVQWAPRINLAAKTGWHTNRIVRALDTALEGWETRIPTG 431


>gi|226951499|ref|ZP_03821963.1| GTP-binding protein, 16S rRNA-binding, ribosome-associated GTPase
           [Acinetobacter sp. ATCC 27244]
 gi|226837792|gb|EEH70175.1| GTP-binding protein, 16S rRNA-binding, ribosome-associated GTPase
           [Acinetobacter sp. ATCC 27244]
          Length = 341

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 77/210 (36%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +
Sbjct: 41  VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSREKSQAVFVDTPGMHKKE 100

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + K   +     + + +L+L + +        E+   K    ++  I +  K D + 
Sbjct: 101 VRAINKMMNRAAHSALRDVNLVLFVVDAQKWTQNDELVLEKLKNADMPVILVINKLDTFE 160

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E    +               S+  G  LE L + I+  L  +         + +  
Sbjct: 161 NKNEALPLIQERAKLMNFAEIVPVSALRGANLEHLRDTIEKYLPYQPPLYSLDQITDRSE 220

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M  L E +   D+ +   
Sbjct: 221 RFLASEIIREKIMRQLGE-ELPYDLTVQIE 249


>gi|269792674|ref|YP_003317578.1| GTP-binding protein Era [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100309|gb|ACZ19296.1| GTP-binding protein Era [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 303

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 73/200 (36%), Gaps = 23/200 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG  N GKSSL NAL  + V  V+    TTR  +   +  +GY + + DT G+ E  
Sbjct: 10  VALLGRPNVGKSSLANALVGEKVMAVSPKAQTTRHAIRGIVQGDGYQIVLVDTPGVHEPR 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK---------NIDFIFIGTKSDLY 332
             + +  I +    +E+   I  + +  SK   S  +             +    K DL 
Sbjct: 70  HDLGRFMISQIRAALEDVCGICFVVDATSKGISSLDRRVLEWIQEAGRPALLCVNKVDLL 129

Query: 333 STYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +   + +D                +S+  G  L+ L   +   L       P      + 
Sbjct: 130 ARKDDFWDVVALYQDQYRFDAVVPVSATQGTNLDVLKEAMVKWLPESLPLFPEEFLIDRT 189

Query: 379 HLYHLSQTVRYLEMASLNEK 398
             +   + +R     ++ E+
Sbjct: 190 ERFLAEEIIREKIFLAVEEE 209


>gi|330994712|ref|ZP_08318635.1| GTPase Der [Gluconacetobacter sp. SXCC-1]
 gi|329758353|gb|EGG74874.1| GTPase Der [Gluconacetobacter sp. SXCC-1]
          Length = 467

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 113/322 (35%), Gaps = 45/322 (13%)

Query: 87  GGIAVVNGILEELAKMPNLRLANP--GEFSRRAFENGKIDLLEAESLADLISSETEMQRR 144
             +A  + +L  +     +  A+     + RR      +   +AE        +      
Sbjct: 80  SAVAHADLVLFCIDARSGITPADQHFANWLRRQGRPVLLIANKAEG------RQGAAAAM 133

Query: 145 LSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS 204
            +     G   ++  +  + +  + + I   L  ++   VQ  + +         + +  
Sbjct: 134 EAFSLGLGAPLAISAEHGEGVADLMAEIVDRLPPTDAPPVQKNTRRLRREQAEAAEGEEE 193

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
                G          ++ I+G  NAGKS+L N L  ++  I    PG TRD + + L  
Sbjct: 194 DVRPPG--------PLRLAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSIAVMLSD 245

Query: 265 EGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK 318
           +   +++ DTAG+R     D+ +EK  +  +   ++ A++++L+ +      ++++   +
Sbjct: 246 DEGPIQLVDTAGLRRKARIDETLEKMSVSASIEALKMAEVVILVLDATLGVHEQDLQIAR 305

Query: 319 -----NIDFIFIGTKSDLYSTYTE------------------EYDHLISSFTGEGLEELI 355
                    +    K D      +                        S+ TG G+ +L+
Sbjct: 306 LIEREGRCCVLALNKWDAVEDRADTRQAIRDRIEMSLAQMRGIPVVAFSALTGAGINKLL 365

Query: 356 NKIKSILSNKFKKLPFSIPSHK 377
             ++       +++     +  
Sbjct: 366 PTVRRAYEVWNRRVATGALNRW 387



 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 18/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           +VI G  N GKS++FN L  +  A+V D PG TRD       + G  ++I DTAG+ E  
Sbjct: 7   VVIAGRPNVGKSTIFNRLVGRRQALVADTPGVTRDRKEGQATVRGRNIRIIDTAGLEEAA 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D +       +   V +ADL+L   +  S               +    + I  K++  
Sbjct: 67  PDTLYGRMRASSESAVAHADLVLFCIDARSGITPADQHFANWLRRQGRPVLLIANKAEGR 126

Query: 333 S---------TYTEEYDHLISSFTGEGLEELINKIKSILS 363
                     +        IS+  GEG+ +L+ +I   L 
Sbjct: 127 QGAAAAMEAFSLGLGAPLAISAEHGEGVADLMAEIVDRLP 166


>gi|87198885|ref|YP_496142.1| GTP-binding protein EngA [Novosphingobium aromaticivorans DSM
           12444]
 gi|123490336|sp|Q2GA15|DER_NOVAD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|87134566|gb|ABD25308.1| Small GTP-binding protein domain [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 461

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 18/163 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +++I+G  N GKS+LFN L  K +A+V D PG TRD    D  L G    I DTAG  + 
Sbjct: 4   QVIIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRFGDASLLGLDFTIVDTAGWEDE 63

Query: 281 DDIVE-KEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD- 330
           D         K+T   +  AD+ L + +  +      +EI+       +  + +  K++ 
Sbjct: 64  DPSTLPGRMRKQTEASLVGADVALFVIDARAGVTPLDEEIARYLRQSTVPIVLMANKAEG 123

Query: 331 ------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNK 365
                 ++  ++  +      S+  G+GL +L   +  ++  K
Sbjct: 124 RAGDPGIFEAFSLGFGEPVAFSAEHGQGLADLFEALLPLIGEK 166



 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 35/193 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG------YLVKISD 273
            K+ I+G  NAGKS+L N L  +D  +     G TRD + ID             V++ D
Sbjct: 190 LKLAIVGRPNAGKSTLINKLLGEDRLLTGPEAGITRDSIAIDWQWFDPEREAYRPVRLID 249

Query: 274 TAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDF 322
           TAG+R+     D +EK  +      ++ A++++L+ +     E        +   +    
Sbjct: 250 TAGMRKKAQVTDKLEKLSVADARHAIDFAEVVVLVLDATRGLEHQDLKIASMVIEEGRAL 309

Query: 323 IFIGTKSDLYSTYTEEYDHLI------------------SSFTGEGLEELINKIKSILSN 364
           +    K D+    +  +  +                   S  TG+GL+EL+     I + 
Sbjct: 310 MIAINKWDVAEDPSGLFQGIRKALDEGLAQVRGVPLLAISGRTGKGLDELLKAAFEIRAA 369

Query: 365 KFKKLPFSIPSHK 377
             K++P +  +  
Sbjct: 370 WSKRVPTAALNRW 382


>gi|330752120|emb|CBL87081.1| GTP-binding protein era homolog [uncultured Flavobacteria
           bacterium]
          Length = 301

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 92/226 (40%), Gaps = 29/226 (12%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            K  E  ++G+ + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ + Y +
Sbjct: 5   AKYMEKHKSGF-VTIVGNPNVGKSTLMNAWVGERLSIITSKAQTTRHRILGIINGDDYQM 63

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDF 322
            +SDT G+ +    ++   +      +E+AD+++ + EI  K+              I  
Sbjct: 64  VLSDTPGVIKPIYEMQSSMMAFVKGALEDADILIYMVEIGEKEMKDAAFFEKIKGSKIPL 123

Query: 323 IFIGTKSDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           + +  K D     T                   IS+ TG  ++E+++ I   L       
Sbjct: 124 LLLINKIDTADQETLMTTIAFWKEMLPMAEVFPISAITGFSVKEVLDYIIDKLPEGPAYY 183

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-------DIIAEN 408
           P    + K   + +++ +R  ++     K+          D   E+
Sbjct: 184 PKDQLTDKPERFFVNEAIRE-QILQYYSKEIPYSVEVDTEDFFEED 228


>gi|329114469|ref|ZP_08243231.1| GTP-binding protein Era-like protein [Acetobacter pomorum DM001]
 gi|326696545|gb|EGE48224.1| GTP-binding protein Era-like protein [Acetobacter pomorum DM001]
          Length = 300

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   ++G  NAGKS+L N +A   ++IV+    TTR  +   L      + + DT G
Sbjct: 7   RCGF-AALVGAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRVLGILMRGHSQILLVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
           I      +++  +   +   E+AD+ LLL +  S          E           +  K
Sbjct: 66  IFRPRRKLDRAMVAAAWTGAEDADITLLLVDARSGLTEAVQTIIERLAETKRKVWLVLNK 125

Query: 329 SDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +DL                   E+  ++S+ TG G+E+L++K+ + L       P    +
Sbjct: 126 TDLVPATALLPLTASITEKLPVEHVFMVSARTGNGVEDLLDKLAASLPEGPYLYPEDDLT 185

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++ VR       +E+
Sbjct: 186 DLPDRLLAAELVREQIFMQTHEE 208


>gi|295094544|emb|CBK83635.1| iron-only hydrogenase maturation protein HydF [Coprococcus sp.
           ART55/1]
          Length = 411

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 15/158 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKSSL NA+  + +A+V+D+ GTT D +   ++L     V I DT G
Sbjct: 10  NRVHIGFFGCRNAGKSSLVNAVTGQSLAVVSDVAGTTTDPVYKSMELLPLGPVVIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTK 328
           I +T ++ E   + +T   +   D+ +L+ + +           E+   KNI++I    K
Sbjct: 70  IDDTGELGELR-VSKTRQVLAKIDVAVLVVDGSVGLSAADRELTELFKEKNINYIIAYNK 128

Query: 329 SDLYS-----TYTEEYDHLISSFTGEGLEELINKIKSI 361
           SDL         + E    +S+   +G+EEL   I  +
Sbjct: 129 SDLVKDDIQVQNSAENSIWVSAERRQGIEELKELIGKL 166


>gi|227510288|ref|ZP_03940337.1| GTP-binding protein Era [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227524439|ref|ZP_03954488.1| GTP-binding protein Era [Lactobacillus hilgardii ATCC 8290]
 gi|227088398|gb|EEI23710.1| GTP-binding protein Era [Lactobacillus hilgardii ATCC 8290]
 gi|227189940|gb|EEI70007.1| GTP-binding protein Era [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 300

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 73/194 (37%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + I+G  N GKS+  N +  + +AI++D   TTR+ +      +   V   DT 
Sbjct: 6   YRSGF-VAIVGRPNVGKSTFLNRVVGQKIAIMSDKAQTTRNKIQGVYTTDEAQVVFIDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGT 327
           GI +  + +    +      ++  D +L +     ++       I   K+       +  
Sbjct: 65  GIHKPQNKLGDFMMDSALSALKEVDAVLFMVNATERRGAGDNFIIDRLKDVHKPIYLLIN 124

Query: 328 KSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D         +   Y           IS+  G  + EL+  +   L N  +  P    
Sbjct: 125 KIDEITPDDVMAIIEQYKNALSFKEVFPISALQGNNVPELLTSLIKELPNGPQYYPKDQV 184

Query: 375 SHKRHLYHLSQTVR 388
           +     + +S+ +R
Sbjct: 185 TDHPERFVISELIR 198


>gi|317132159|ref|YP_004091473.1| GTP-binding protein Era [Ethanoligenens harbinense YUAN-3]
 gi|315470138|gb|ADU26742.1| GTP-binding protein Era [Ethanoligenens harbinense YUAN-3]
          Length = 296

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 79/195 (40%), Gaps = 22/195 (11%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I  +G+ + I+G  N GKS+L NA+  + +AIV+  P TTR+ +T     +   +   DT
Sbjct: 3   IQHSGF-VAIIGRPNVGKSTLLNAILGEKIAIVSPKPQTTRNKITGVYTKDDTQLIFLDT 61

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGT 327
            G  +    +     K     + + D +L + E       +         K +  + +  
Sbjct: 62  PGWHQPKTKLGNYMAKSVDNTLTDVDAVLFVIEPREAPRPAETELLGKLGKQVPVLLVIN 121

Query: 328 KSDL---YSTYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D+    S       H            IS+   +G++ L+ ++ S++    +  P  +
Sbjct: 122 KIDILADKSALMGVIAHWSKLRDFTAVVPISAEKNDGVDALLAELISLMPEGPQYYPDDM 181

Query: 374 PSHKRHLYHLSQTVR 388
            + +     +++ +R
Sbjct: 182 VTAEPERLVVAEIIR 196


>gi|167756284|ref|ZP_02428411.1| hypothetical protein CLORAM_01817 [Clostridium ramosum DSM 1402]
 gi|167703692|gb|EDS18271.1| hypothetical protein CLORAM_01817 [Clostridium ramosum DSM 1402]
          Length = 395

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 17/171 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  N+GKS+L NA   ++V+IV+  PGTT D +   ++++G     + DTAG
Sbjct: 11  NRLHIGFFGKRNSGKSALINAFVNQEVSIVSSEPGTTTDPVYKAMEIDGLGPCLLVDTAG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISF-----PKNIDFIFIGTKSD 330
             +   + +     +T    E  D+ I+L  +    +E+ +      K+I  I + +K+D
Sbjct: 71  FDDIGTLGQLR-NDKTKKASEKIDIAIILFNDRKICQELDWYHYFKEKHIPTILVISKAD 129

Query: 331 L---------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L          +  T E   LISS T +G++EL  K+   +   F+K   +
Sbjct: 130 LQRNDNLLKKITEATSETPLLISSLTKQGIKELQEKLLEKVPADFEKESIT 180


>gi|294651021|ref|ZP_06728361.1| GTP-binding protein era family protein [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292823122|gb|EFF81985.1| GTP-binding protein era family protein [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 341

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 77/210 (36%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +
Sbjct: 41  VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSREKSQAVFVDTPGMHKKE 100

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + K   +     + + +L+L + +        E+   K    ++  I +  K D + 
Sbjct: 101 VRAINKMMNRAAHSALRDVNLVLFVVDAQKWTQNDELVLEKLKNADMPVILVINKLDTFE 160

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E    +               S+  G  LE L + I+  L  +         + +  
Sbjct: 161 NKNEALPLIQERAKLMNFAEIVPVSALRGANLEHLRDTIEKYLPYQPPLYSLDQITDRSE 220

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M  L E +   D+ +   
Sbjct: 221 RFLASEIIREKIMRQLGE-ELPYDLTVQIE 249


>gi|41017011|sp|Q7URJ8|DER_RHOBA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|327537179|gb|EGF23928.1| small GTP-binding protein [Rhodopirellula baltica WH47]
          Length = 454

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSLFN LA++ +AIV +  G TRD +T  ++ +    ++ DT G+   
Sbjct: 5   QVAIVGRPNVGKSSLFNWLARRRLAIVDNFEGVTRDRMTTLIESDDQFFELIDTGGMGVE 64

Query: 281 DDIVEKEGIKRTF-LEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDL 331
           D       ++R   + + +AD+ILL+ ++        ++ +   +      I +  K+D 
Sbjct: 65  DADDLTSDVRRQIDMAIASADVILLVVDVQTGLMPLDEEVVERLRGVERPVILVANKAD- 123

Query: 332 YSTYTEEYDHLISSFTGEGLEELI 355
                E  D     F   G   LI
Sbjct: 124 ----QEHQDIHADEFRRLGRGHLI 143



 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 11/126 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+  N LA+ D  IV+++ GTTRD + +  +++G      DT G+R+
Sbjct: 178 MKIAIVGRRNVGKSTFVNTLAESDRMIVSEVAGTTRDSVDVRFEIDGQTFLAIDTPGLRK 237

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
              I    +  G  R    V  AD++L+  +   K               +   IF+  K
Sbjct: 238 RKSIRTDLDFYGTHRAQRSVRRADVVLMFFDALEKTSKVDKQLVGYIMEHHKPVIFVVNK 297

Query: 329 SDLYST 334
            D    
Sbjct: 298 WDKVDK 303


>gi|294793788|ref|ZP_06758925.1| GTP-binding protein Era [Veillonella sp. 3_1_44]
 gi|294455358|gb|EFG23730.1| GTP-binding protein Era [Veillonella sp. 3_1_44]
          Length = 307

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 22/199 (11%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E  ++G+ + ++G  N GKS+L NAL    +AIV+D   TTR+ +      E   + 
Sbjct: 10  NKNEHFKSGF-VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDESKQIV 68

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDF 322
             DT G+ +    + +  +      ++  + +L +   N K+       I   K   +  
Sbjct: 69  FMDTPGVHKPKHKLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPV 128

Query: 323 IFIGTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             +  K D                 Y       IS+   E L E++  ++  L    +  
Sbjct: 129 FLVVNKIDTLKKEELLEAIVFYQDAYPFAGVIPISAKDKENLSEILKVLEETLPEGPQYF 188

Query: 370 PFSIPSHKRHLYHLSQTVR 388
           P  + + +     +S  VR
Sbjct: 189 PEDMITDQPERLIISDIVR 207


>gi|238021058|ref|ZP_04601484.1| hypothetical protein GCWU000324_00955 [Kingella oralis ATCC 51147]
 gi|237868038|gb|EEP69044.1| hypothetical protein GCWU000324_00955 [Kingella oralis ATCC 51147]
          Length = 308

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 80/210 (38%), Gaps = 25/210 (11%)

Query: 203 ISSHISQGKLG-EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           +   ++  K   E  R G+ I I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 3   LEEFLANEKTAAEGYRCGF-IAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 61

Query: 262 LDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLK------EINSKKEI 314
              +       DT G +    + +           V   D+I+ +       + +     
Sbjct: 62  YTDDTAQFVFVDTPGFQTYHRNALNDRLNLNVTEAVSGVDVIVFVVEALRFSDADRIVLK 121

Query: 315 SFPKNIDFIFIGTKSD------------LYSTYTEEYDH----LISSFTGEGLEELINKI 358
             PKN   + +  K D              +   +E+D     ++S+  G  +  L+ K+
Sbjct: 122 QLPKNTPVMLVVNKIDKNKAKDAATLDAFIAEVMQEFDFAGYEVVSAKHGLRIANLLAKL 181

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           KS L       P  + + K   +  ++ VR
Sbjct: 182 KSYLPESVPMYPEDMITDKSSRFLAAEIVR 211


>gi|139439609|ref|ZP_01773022.1| Hypothetical protein COLAER_02049 [Collinsella aerofaciens ATCC
           25986]
 gi|133774950|gb|EBA38770.1| Hypothetical protein COLAER_02049 [Collinsella aerofaciens ATCC
           25986]
          Length = 356

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 23/217 (10%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
           F E E+   F       ++  L ++  S    G +    R+G+ + ++G  NAGKS+L N
Sbjct: 26  FDEVEEFDPFE-GMSDEELDALCDEDESLAGFGDVEPGFRSGF-VALVGRPNAGKSTLLN 83

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           A   K VAI + +  TTR  +   ++  GY +   DT GI +  D +  E  K    E+ 
Sbjct: 84  ACYGKKVAITSPVAQTTRRRMRAVVNRPGYQLVFVDTPGIHKPKDGLGSELNKSALFELN 143

Query: 298 NADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-------------LYSTYT 336
           + D++  L +             E         + + TK+D              +    
Sbjct: 144 DVDVVAFLIDATKPIGRGDAWVAERVKNARSKKVLVLTKADEADPAQVMEQLKAAHELME 203

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            + + + SS     ++  I  +   L    +  P  +
Sbjct: 204 YDDEIVTSSVKNFNVDAFIETVAHFLPEGPRWFPEDM 240


>gi|254431747|ref|ZP_05045450.1| GTP-binding protein EngA [Cyanobium sp. PCC 7001]
 gi|197626200|gb|EDY38759.1| GTP-binding protein EngA [Cyanobium sp. PCC 7001]
          Length = 441

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 12/148 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +  H+      E      ++ I+G  N GKSSL NA+  ++ AIV+ I GTTRD 
Sbjct: 143 DLLDQVIGHLP-PTQDEEGEEPIQLAIIGRPNVGKSSLLNAVCGENRAIVSPIRGTTRDT 201

Query: 258 LTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEI------ 308
           +   ++ EG   K+ DTAGI   R  +   E  GI R+F  +E +D+ +L+ +       
Sbjct: 202 IDTTIEREGKTWKLLDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTE 261

Query: 309 -NSKKEISFPKNIDFI-FIGTKSDLYST 334
            + +      ++      +  K D    
Sbjct: 262 QDQRLAGRIEEDGRACVVVVNKWDAIEK 289



 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 19/147 (12%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD-IVEKEGI 289
           GKS+L N L +   AIV D PG TRD    +        ++ DT G+   DD     E  
Sbjct: 2   GKSTLVNRLCRSREAIVHDQPGVTRDRTYQEGFWGDRTFRVVDTGGLVFDDDSEFLPEIR 61

Query: 290 KRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLYST------- 334
           ++  L +  A + L++ +       + + I+     +N+  +    K +           
Sbjct: 62  EQANLALAEASVALVIVDGQQGCTAADEAIAAWLRGQNVPVLLAVNKCESPEAGLAMAAE 121

Query: 335 ---YTEEYDHLISSFTGEGLEELINKI 358
                    H IS+  G G  +L++++
Sbjct: 122 FWGLGLGEPHPISAIHGAGTGDLLDQV 148


>gi|237734921|ref|ZP_04565402.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382249|gb|EEO32340.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 395

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 17/171 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  N+GKS+L NA   ++V+IV+  PGTT D +   ++++G     + DTAG
Sbjct: 11  NRLHIGFFGKRNSGKSALINAFVNQEVSIVSSEPGTTTDPVYKAMEIDGLGPCLLVDTAG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISF-----PKNIDFIFIGTKSD 330
             +   + +     +T    E  D+ I+L  +    +E+ +      K+I  I + +K+D
Sbjct: 71  FDDIGTLGQLR-NDKTKKASEKIDIAIILFNDRKICQELDWYHYFKEKHIPTILVISKAD 129

Query: 331 L---------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L          +  T E   LISS T +G++EL  K+   +   F+K   +
Sbjct: 130 LQRNDNLLKKVTEATSETPLLISSLTKQGIKELQEKLLEKVPADFEKESIT 180


>gi|325846671|ref|ZP_08169586.1| hydrogenase maturation GTPase HydF [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481429|gb|EGC84470.1| hydrogenase maturation GTPase HydF [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 380

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 11/167 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               + +LG +N+GKSS  N ++ +DV+IV++  GTT D +   +++  +  V   DTAG
Sbjct: 7   ERISLALLGKTNSGKSSFLNFISDQDVSIVSNQKGTTTDPIKKSMEIHDFGPVLFFDTAG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-KEISFPKN--IDFIFIGTKS---- 329
             +  ++ EK  I++T   +E AD++L    I+ K +EIS  K      IFI TK     
Sbjct: 67  FDDDTNLYEKR-IEKTKKAIEKADILLYFLSIDDKIEEISVLKEKYDKIIFIATKQDLEI 125

Query: 330 --DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             DL   + +     I+       E+  +KIKS    +   +  S+ 
Sbjct: 126 GKDLLEKFKDFSPLAINIKNNHDREKFFDKIKSAYKIEDNSITKSLV 172


>gi|297545446|ref|YP_003677748.1| small GTP-binding protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843221|gb|ADH61737.1| small GTP-binding protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 408

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 20/172 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  NAGKSSL NAL  ++VA+V+D+ GTT D ++  +++     V I DTAG+ 
Sbjct: 10  LHIAIFGRRNAGKSSLINALTNQEVALVSDVAGTTTDPVSKAMEILPIGPVVIIDTAGLD 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD 330
           +T ++ E   +K+T+  +   DL +L+ +          +  ++   KNI  + +  K D
Sbjct: 70  DTGELGELR-VKKTYEVLNRTDLAILVIDGTIGLSEFEENVLKVIRDKNIPVVGVINKKD 128

Query: 331 LYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L     E+               S+    G+E L   +        ++L   
Sbjct: 129 LSQYSEEDKRKWEERLKLELIEVSALKKHGIEALKMMLIKKAPYDDRELSIV 180


>gi|22297600|ref|NP_680847.1| GTP-binding protein Era [Thermosynechococcus elongatus BP-1]
 gi|22293777|dbj|BAC07609.1| tlr0056 [Thermosynechococcus elongatus BP-1]
          Length = 307

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 21/192 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+LFN L  + VAI + +  TTR+ L   L          DT G
Sbjct: 15  RSGF-VALVGRPNVGKSTLFNHLLGQKVAITSPVAQTTRNRLRGILTTATAQFIFVDTPG 73

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
           I +    + +  +      ++  D I+ + +  S          ++        +    K
Sbjct: 74  IHKPHHRLGEVLVHNAKGVLKRVDAIVFVVDAASPPGRGDRYVADLLTTTPAPVLMAINK 133

Query: 329 SDLYSTYTEE------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            DL      E              +  S+ TGEG+  L + I + L       P  + + 
Sbjct: 134 IDLLPPEAREQRQQDYQTLGPWPAYPCSALTGEGVGLLQSAIAAQLPLGPYYYPPDMVTD 193

Query: 377 KRHLYHLSQTVR 388
           +   + +++ +R
Sbjct: 194 QPERFIMAELIR 205


>gi|294463173|gb|ADE77123.1| unknown [Picea sitchensis]
          Length = 433

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 25/196 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + ++G  N GKS+L N +  + ++IVTD P TTR  +        Y + + DT G
Sbjct: 134 RSGY-VAVVGKPNVGKSTLLNQMIGQKLSIVTDKPQTTRHRILGLCSAPDYQMVLYDTPG 192

Query: 277 -IRETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNIDFIFI 325
            I++    ++   +K       NAD +L + ++            +  +   K    + +
Sbjct: 193 VIQKEMHKLDAMMMKNVHSATGNADCVLTVVDVCKVPEKVNDLFEEDGVDLKKKPPTLLV 252

Query: 326 GTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL                   ++   IS+  G G+E++ N I S L          
Sbjct: 253 LNKKDLMKPGEIAKRMEWYEKFGGADHILSISAKYGHGVEDVKNWIVSKLPYGPAYYSKD 312

Query: 373 IPSHKRHLYHLSQTVR 388
           I S     + +++ VR
Sbjct: 313 IISEHPERFFVAEIVR 328


>gi|146182630|ref|XP_001471040.1| GTP-binding protein enga [Tetrahymena thermophila]
 gi|146143797|gb|EDK31367.1| GTP-binding protein enga [Tetrahymena thermophila SB210]
          Length = 670

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 12/178 (6%)

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ-GKLGEIIRNGYKIVILGH 227
           R F +A+ D     D+ + +  + +  +   K+D+           +  +   +I I+G 
Sbjct: 309 REFDKANPDPENNSDLDSDNEFDPVETLQNTKDDLLKEDKGVTSQNDKKKKPIQISIIGR 368

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE---TDDIV 284
           SN GKS+L N L +++  I  D+ GTTRD + +     G  + + DT+GI +       V
Sbjct: 369 SNCGKSTLVNNLLQEERVIADDLAGTTRDAIKVQWAYRGRKIDLVDTSGIDKKITKVSEV 428

Query: 285 EKEGIKRTFLEVENADLILLLKE---INSKKEISFP-----KNIDFIFIGTKSDLYST 334
           EK+    T   V+ + +++ + +       +++S       +    I +  K DL   
Sbjct: 429 EKKIQNDTIRAVKQSHVVVCMIDALRAFQSQDLSLAQYVCDQGRALILVVNKWDLVPE 486



 Score = 76.1 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 81/198 (40%), Gaps = 19/198 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALA--KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           Y I  +G  N GKSSLFN L+    + A+   +PG TRD       + GY +++ DTAG+
Sbjct: 62  YTISFVGRPNVGKSSLFNKLSEDGMNKALTDRMPGLTRDRKEQITTILGYPLRLVDTAGV 121

Query: 278 RETDDIVEKE--------GIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS 329
            +      +          + +T   +  +DL L + +  +++ I+  ++ +      + 
Sbjct: 122 EKLPKDPHRFKPTQIKQKMMDQTVQALIYSDLTLFVLD--ARQGIT-ARDKELAKWLKRR 178

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK--LPFSIPSHKRHLYHLSQTV 387
            L     E    +  + T    +  I K+  + +    +  +  S   +  +   L   +
Sbjct: 179 LLQDKSEENVKKMNENATDLDKDIFIKKLILLANKADNETIIEDSNIMNDVYKLGLGDPL 238

Query: 388 RYLEMASLNEKDCGLDII 405
                 S ++ D  +D++
Sbjct: 239 ----FVSAHQGDGLIDLL 252


>gi|299783168|gb|ADJ41166.1| GTP-binding protein Era [Lactobacillus fermentum CECT 5716]
          Length = 301

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 83/221 (37%), Gaps = 24/221 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L N +  + VAI++++  TTR+ +      +   +   DT 
Sbjct: 6   YKSGF-VALIGRPNVGKSTLLNYMVGQKVAIMSNVAQTTRNKIQGIYTSDEAQIVFIDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGT 327
           GI +    +     +     ++  D IL +   N K+       I   K        +  
Sbjct: 65  GIHKPQTRLGXFMERSALSALDEVDAILFVVPANEKRGAGDNFIIERLKKVQQPIYLVVN 124

Query: 328 KS---------DLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K          D+ + Y           +S+  G  +  LIN +   L    +  P    
Sbjct: 125 KIDQVNPNDLPDIIAQYEGALPFKKVVPVSALQGNNVNTLINDLVDQLPTGPQYYPADQV 184

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
           S     + +++ +R  E   LN ++     +A ++      
Sbjct: 185 SDHPERFVIAEMIR--EKVFLNTREEVPHSVAIDVTSIQRE 223


>gi|323483769|ref|ZP_08089149.1| hypothetical protein HMPREF9474_00898 [Clostridium symbiosum
           WAL-14163]
 gi|323692742|ref|ZP_08106970.1| GTP-binding protein Era [Clostridium symbiosum WAL-14673]
 gi|323402960|gb|EGA95278.1| hypothetical protein HMPREF9474_00898 [Clostridium symbiosum
           WAL-14163]
 gi|323503184|gb|EGB19018.1| GTP-binding protein Era [Clostridium symbiosum WAL-14673]
          Length = 300

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 81/204 (39%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + ++G  N GKS+L N L  + +AI +D P TTR+ +      E   +   DT 
Sbjct: 5   LKSGF-VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFLDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGT 327
           GI +  + + +  +      ++  D+IL L E ++          E         + +  
Sbjct: 64  GIHKAKNKLGEYMVSVAEHTLKEVDVILWLVEPSTFIGAGERHIAEQLNKVKTPVMLVIN 123

Query: 328 KSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D           + Y +  +      +S+     ++++ + I   L    +       
Sbjct: 124 KIDTVKKDEILTFIAAYKDICNFAEIIPVSALKEINIDDVKDCIFKYLPEGPQFYDEDTV 183

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +      ++ +R   +  L+++
Sbjct: 184 TDQPMRQIAAELIREKALRMLDDE 207


>gi|163791428|ref|ZP_02185837.1| GTP-binding protein Era [Carnobacterium sp. AT7]
 gi|159873292|gb|EDP67387.1| GTP-binding protein Era [Carnobacterium sp. AT7]
          Length = 299

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 68/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +          +   DT GI +  
Sbjct: 9   VSIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTTPESQIVFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY- 332
             +    +   F      D+IL +  I  K+        E           +  K D   
Sbjct: 69  HRLGDFMVDSAFSAFREVDVILFMVNIAEKRGPGDNFIMERLKTVKSPVFLVLNKIDKIH 128

Query: 333 ------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                       S    E    IS+  G  +E L++++   L    +  P    +     
Sbjct: 129 PDQLLPIIEDYRSLVDFEQVIPISAADGNNVETLLSEVTKYLPEGPQFYPDDQVTDHPEY 188

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 189 FIVSELIR 196


>gi|302391411|ref|YP_003827231.1| GTP-binding protein Era [Acetohalobium arabaticum DSM 5501]
 gi|302203488|gb|ADL12166.1| GTP-binding protein Era [Acetohalobium arabaticum DSM 5501]
          Length = 306

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 96/250 (38%), Gaps = 42/250 (16%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
                 E  ++G+ + ++G  N GKS+L N L  + +AI T    TTR+ L   L  +  
Sbjct: 5   ETLNKEENFKSGF-VTVIGQPNVGKSTLINHLIGQKIAITTPKKQTTRNKLQCILTRDNA 63

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------- 318
            +   DT G+    D + +  +   +  ++  +LI  + +  ++K I+  +         
Sbjct: 64  QLIFIDTPGVHRPKDKMGEYMVDTAYKALKKVELIYFMVD--AQKGITDLERKINNQLSG 121

Query: 319 -NIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSILSN 364
                I +  K DL S    +                 +S+ TGE    LI+K   +L +
Sbjct: 122 IQTPTIIVLNKIDLVSKAKLKDVIESCRRLGDYAELIPVSAETGENTNTLIDKSIELLPD 181

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLDIIAENLRLASVSLGKITG 421
             K  P  + + +   + +++ +R   M    E       L+++               G
Sbjct: 182 GPKYYPEDMVTDQIEQFVITELIREKIMYLTREEVPHSVALEVVQM-------------G 228

Query: 422 CVDVEQLLDI 431
             + + L+D+
Sbjct: 229 ERENKDLIDV 238


>gi|258645786|ref|ZP_05733255.1| GTP-binding protein Era [Dialister invisus DSM 15470]
 gi|260403157|gb|EEW96704.1| GTP-binding protein Era [Dialister invisus DSM 15470]
          Length = 300

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 80/196 (40%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E   +G+ + ++G  N GKS+L NA+  + V+IV+    TTR+ +T   + +   V   D
Sbjct: 4   EKFHSGF-VALVGRPNVGKSTLMNAVLGEKVSIVSAHAQTTRNKITGVWNGKNSQVVFLD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFI 325
           T G+ +    + +   + T   ++  D+I+ +   N            +   K +  + +
Sbjct: 63  TPGMHKPQSKLGQVIRQSTVDALDEVDVIVFICACNDPLGAGDRYILNLLKDKKVPVVLV 122

Query: 326 GTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            +K DL                +       +S+ +GE L+E    ++  L    K  P  
Sbjct: 123 LSKIDLIKKDMLLKKIGQYSRIHPFSEIIPLSARSGENLKEFTTVLERYLPEGPKYFPDD 182

Query: 373 IPSHKRHLYHLSQTVR 388
           + + +     + + VR
Sbjct: 183 MVTDQPERNIVQEIVR 198


>gi|188585831|ref|YP_001917376.1| GTP-binding protein Era [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350518|gb|ACB84788.1| GTP-binding protein Era [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 297

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI  +G+ + ++G  NAGKS+L N +  + V I +D P TTR+ +    + E   +   D
Sbjct: 4   EIFYSGF-VSVIGRPNAGKSTLINYILGEKVVITSDKPQTTRNKIQCVYNGENSQIIFLD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
           T G+ +    + ++ +K     +   D IL + +++           E     +   I +
Sbjct: 63  TPGMHKPKHKLGEKMVKAVDESLNEMDAILFVIDVSVPFGKGETMLVERLARLSTPVILV 122

Query: 326 GTKSDLYS-------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL                 + E  H IS+  G  L +L+ ++++++    K  P  
Sbjct: 123 MNKMDLVDEDLAREKTEKIKEKLSPESIHYISALYGNNLVDLLGELENLMPEGPKYYPED 182

Query: 373 IPSHKRHLYHLSQTVR 388
               +   + +S+ +R
Sbjct: 183 QLIDQPERFVVSELIR 198


>gi|1813480|gb|AAB41682.1| putative GTPase [Campylobacter jejuni]
          Length = 383

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 29/240 (12%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL---GEIIRN 218
           + ++ ++       LD   E   +    + ++ D      D   H  +GK     E+ +N
Sbjct: 135 VKEIFNLSVTHNVGLDELYEWLEKFLHEEFLIPDEEENLEDFLEHYEEGKEFQFKEVDQN 194

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++  DTAGIR
Sbjct: 195 HIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIR 254

Query: 279 ETDDIV--EKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNI-DFIFIGTK 328
           +   I   E+  + RT   + ++ + LL+ +        + +      K+    I +  K
Sbjct: 255 KRGKIQGLERFALNRTEKILSHSQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNK 314

Query: 329 S----------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                            D +          +S+ +G+ +  L++KI  I  N  +K+  S
Sbjct: 315 WDKSEMDFDKTVKELHLDRFKFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTS 374



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD     + +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           ++  K   K T    + +D+IL L +     +    +              +  K D   
Sbjct: 64  ELF-KNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVVNKVDNKK 122

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKF 366
                ++            S     GL+EL   ++  L  +F
Sbjct: 123 DEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFLHEEF 164


>gi|319935428|ref|ZP_08009865.1| GTP-binding protein [Coprobacillus sp. 29_1]
 gi|319809644|gb|EFW06057.1| GTP-binding protein [Coprobacillus sp. 29_1]
          Length = 297

 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N + K  +AI +    TTR+ +      E   +   DT GI +  
Sbjct: 8   VSIVGRPNVGKSTLLNHILKTKLAITSSTAQTTRNTIQGIYTDEDAQIIFMDTPGIHKPQ 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           D +           +   DL+L L   + K         E     +     I  K DL S
Sbjct: 68  DGLGSFMNTNALNSIYGVDLVLFLAPADEKIGKGDRFIVERLKEADGPVYLILNKIDLLS 127

Query: 334 T-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                         +  +    IS+  G+ +++L+N IK+ L       P    +     
Sbjct: 128 KEQLIEKLNEWKGLFDFKEIIPISALNGDNIDDLMNTIKNDLQEGVMYYPKDHLTDHPER 187

Query: 381 YHLSQTVR 388
           + +++ +R
Sbjct: 188 FIMAEFIR 195


>gi|237742515|ref|ZP_04572996.1| GTP binding protein [Fusobacterium sp. 4_1_13]
 gi|229430163|gb|EEO40375.1| GTP binding protein [Fusobacterium sp. 4_1_13]
          Length = 298

 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 24/191 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDL 331
            ++ +         +++ D+IL L + +                  K    I +  K DL
Sbjct: 66  HLLGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENAKKKPKILLVNKVDL 125

Query: 332 YSTYTEEY--------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            S   +E                  +S     G+ +L+  +   L    K  P  + +  
Sbjct: 126 ISDEQKEEKLKEIKEKLGEFNKIIFVSGMYSFGISQLLEALDPYLEEGVKYYPDDMYTDM 185

Query: 378 RHLYHLSQTVR 388
                +++ VR
Sbjct: 186 STYRIITEIVR 196


>gi|118579918|ref|YP_901168.1| small GTP-binding protein [Pelobacter propionicus DSM 2379]
 gi|118502628|gb|ABK99110.1| iron-only hydrogenase maturation protein HydF [Pelobacter
           propionicus DSM 2379]
          Length = 412

 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 18/173 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N GKSSL N+L ++D A+V+D+ GTT D +   ++L     V   DTAG
Sbjct: 8   NRLHIGLFGRRNVGKSSLLNSLTRQDAALVSDVAGTTTDPIEKPMELLPLGPVLFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFP----KNIDFIFIGTKS 329
           I +T  + E   ++RT   ++  D+ LL+    E    +E+       + I  I +  KS
Sbjct: 68  IDDTGALGELR-VQRTRQVLDRVDVGLLVSIAGEWGEFEEVILAELGGRGIPVIVVFNKS 126

Query: 330 DLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           D  +        L          S+  GEGL  L   +     + F   P  +
Sbjct: 127 DCCAVDDGRLVALHERGALCVVTSAPRGEGLPALREALIQCAPDGFITPPAIL 179


>gi|282850278|ref|ZP_06259657.1| GTP-binding protein Era [Veillonella parvula ATCC 17745]
 gi|282579771|gb|EFB85175.1| GTP-binding protein Era [Veillonella parvula ATCC 17745]
          Length = 299

 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 22/199 (11%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E  ++G+ + ++G  N GKS+L NAL    +AIV+D   TTR+ +      E   + 
Sbjct: 2   NKNEHFKSGF-VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDESKQIV 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDF 322
             DT G+ +    + +  +      ++  + +L +   N K+       I   K   +  
Sbjct: 61  FMDTPGVHKPKHKLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPV 120

Query: 323 IFIGTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             +  K D                 Y       IS+   E L E++  ++  L    +  
Sbjct: 121 FLVVNKIDTLKKEELLEAIVSYQDAYPFAGVIPISAKDKENLSEILKVLEETLPEGPQYF 180

Query: 370 PFSIPSHKRHLYHLSQTVR 388
           P  + + +     +S  VR
Sbjct: 181 PEDMITDQPERLIISDIVR 199


>gi|315652502|ref|ZP_07905486.1| GTP-binding protein Era [Eubacterium saburreum DSM 3986]
 gi|315485218|gb|EFU75616.1| GTP-binding protein Era [Eubacterium saburreum DSM 3986]
          Length = 304

 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 23/208 (11%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           GE +++G+ + ++G  N GKS+L N L  + +AI +  P TTR+ +      E   +   
Sbjct: 3   GEYMKSGF-VALIGRPNVGKSTLMNTLIGQKIAITSSKPQTTRNRIQTVFTDERGQIVFL 61

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIF 324
           DT GI +  + + +  +K +   + + DL+L L E  +          EI     +  I 
Sbjct: 62  DTPGIHKAKNKLGEYMVKVSTRTLRDVDLVLWLVEPGTFIGEGDEHIFEILSDVEVPVIL 121

Query: 325 IGTKSDLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
              K D      +  +                +S+  G   +EL+  I   LS       
Sbjct: 122 AVNKVDSLKQKDDILEVIAKYSSKMNFADIVPVSALKGTNTDELLKVIFKYLSEGPMYYD 181

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               + +      S+ +R   +  L ++
Sbjct: 182 EDTVTDQPIKQIASELIREKALKFLQDE 209


>gi|312898794|ref|ZP_07758182.1| GTP-binding protein Era [Megasphaera micronuciformis F0359]
 gi|310619956|gb|EFQ03528.1| GTP-binding protein Era [Megasphaera micronuciformis F0359]
          Length = 300

 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 93/221 (42%), Gaps = 23/221 (10%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K+ +  ++G+ + ++G  N GKS+L N + ++ V IV+D   TTR+ +      +   + 
Sbjct: 2   KMKDQFKSGF-VAVVGRPNVGKSTLINRIIRQKVTIVSDKAQTTRNKILCIHTDDECQII 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDF 322
             DT GI +    + +      F  + + D  + L   + K+               +  
Sbjct: 61  FLDTPGIHKPKHKLGRFMDDAAFSALHDIDAAVFLVAADEKRGPGDMFVLNKVKDAGVPV 120

Query: 323 IFIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKL 369
             +  K+D         + + Y++ YD      +S+  G+ ++ + +++K IL    K  
Sbjct: 121 FLVINKTDKVDKKKIPAVIADYSQLYDFAGIIPVSALNGDNVDIVTDELKKILQPGPKYF 180

Query: 370 PFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENL 409
           P  + + +     +S+ VR  L  A+  E    + +  E +
Sbjct: 181 PDDMITDQPERLLVSEIVREKLLRATREEVPHAVAVFTEEM 221


>gi|289579295|ref|YP_003477922.1| small GTP-binding protein [Thermoanaerobacter italicus Ab9]
 gi|289529008|gb|ADD03360.1| small GTP-binding protein [Thermoanaerobacter italicus Ab9]
          Length = 408

 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 20/172 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  NAGKSSL NAL  ++VA+V+D+ GTT D ++  +++     V I DTAG+ 
Sbjct: 10  LHIAIFGRRNAGKSSLINALTNQEVALVSDVAGTTTDPVSKAMEILPIGPVVIIDTAGLD 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD 330
           +T ++ E   +K+T+  +   DL +L+ +          +  ++   KNI  + +  K D
Sbjct: 70  DTGELGELR-VKKTYEVLNRTDLAILVIDGTIGLSEFEENVLKVIRDKNIPVVGVINKKD 128

Query: 331 LYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L     E+               S+    G+E L   +        ++L   
Sbjct: 129 LSQYSEEDKRKWEERLKLELIEVSALKKHGIEALKMMLIKKAPYDDRELSIV 180


>gi|154175320|ref|YP_001407734.1| GTP-binding protein EngA [Campylobacter curvus 525.92]
 gi|166224320|sp|A7GWZ2|DER_CAMC5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|112803598|gb|EAU00942.1| putative GTPase [Campylobacter curvus 525.92]
          Length = 461

 Score = 93.8 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 13/179 (7%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230
            +   +    E+DV      E  +D L   ND     S     +      ++ I+G  N 
Sbjct: 151 ELSQWIAGQLEDDVIKTDESEDFDDFLENFNDEGELESSENFEDRY---IRVGIVGRVNV 207

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEG 288
           GKSSL NAL K   A+V+DI GTT D +    + EG + +  DTAGIR+   I  +E+  
Sbjct: 208 GKSSLLNALVKDARAVVSDIAGTTIDPVNEIYEHEGRIFEFVDTAGIRKRGKIEGIERYA 267

Query: 289 IKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYSTYTEEY 339
           + RT   +EN+D+ LL+ + +        +        N+  I +  K D      +E 
Sbjct: 268 LNRTEKILENSDIALLVLDSSEPLTELDERIAGVANKFNLGMIIVLNKWDKSEREFDEL 326



 Score = 93.0 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 18/169 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI+++G  N GKSSLFN LA++ +AI ++I GTTRD     +++EG    + D+ G+ E+
Sbjct: 3   KIILVGKPNVGKSSLFNRLARQRIAITSEISGTTRDTNKAKIEVEGKDCLLIDSGGLDES 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFP---KNIDFIFIGTKSDLY 332
            ++  K    +T  E +N+D+I+ + +      +  + I +     N+    +  K D  
Sbjct: 63  SELF-KNVKFKTLAEAKNSDIIIYMVDGKMAPSDEDRAIFYELCKLNLPIALVINKIDSK 121

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 ++ +          S     G++EL   I   L +   K   S
Sbjct: 122 KDEQRAWEFINFGVKEIFEISVSHNTGIDELSQWIAGQLEDDVIKTDES 170


>gi|288818281|ref|YP_003432629.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
 gi|288787681|dbj|BAI69428.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
 gi|308751878|gb|ADO45361.1| GTP-binding protein Era [Hydrogenobacter thermophilus TK-6]
          Length = 302

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 77/204 (37%), Gaps = 27/204 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N +    V+IV+  PGTTR  +    ++     +   DT GI   
Sbjct: 6   VAIVGKPNVGKSTLLNQIIGTKVSIVSPKPGTTRIRILGVKNIPDEAQIVFLDTPGIYRP 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISF-------PKNIDFIFIGTKS 329
            D + +  ++     +++AD+IL + +         E+ F        +      +  K 
Sbjct: 66  KDALGEAMVQVASASLQDADIILFMIDAEDGWLEDDELVFSNYIKPLAQEKHIFLVINKV 125

Query: 330 DLYS------TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D            EE              S+  G  ++EL+  I   L +     P  + 
Sbjct: 126 DRVGHVSQVLPLAEEIIKKHGEFKEVLPISALKGYNIDELLKTILKYLPDGKPLFPPEML 185

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           +        ++ VR   +  ++++
Sbjct: 186 TDLPLRLLAAEIVREKVLMKIHQE 209


>gi|219124383|ref|XP_002182484.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405830|gb|EEC45771.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 489

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 14/127 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ILG  N GKS+L NAL K+D  IV   PG TRD + ++   +   V+I DTAGIR+
Sbjct: 229 LQLAILGRQNVGKSTLVNALLKQDRVIVGATPGLTRDAIAVEWTWKNRPVQIVDTAGIRK 288

Query: 280 T-----DDIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNIDFIFI 325
                 +D +E   ++     ++ AD+ +L+ +  ++K         +    +    +  
Sbjct: 289 RSQRNHEDAIEDLSVEDALRAMKVADVAVLVLDAEARKLQRQELAIADAVLKEGRALVVA 348

Query: 326 GTKSDLY 332
             K DL 
Sbjct: 349 ANKMDLI 355



 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 19/109 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDV-----AIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
             + ILG  NAGKS+LFN L  K       AIV+++PGTTRD       + G L ++ DT
Sbjct: 3   IVVSILGPPNAGKSTLFNRLLDKAANRAGTAIVSNVPGTTRDRRECVGRIGGTLFRLVDT 62

Query: 275 AGI--------------RETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           AG+              +  + I+ K  + +T      ADL+ L+ +  
Sbjct: 63  AGVDGERLELLAQSRRNQNGEGILMKFMMGQTLEAARQADLVFLMFDAR 111


>gi|255535475|ref|YP_003095846.1| GTP-binding protein Era [Flavobacteriaceae bacterium 3519-10]
 gi|255341671|gb|ACU07784.1| GTP-binding protein Era [Flavobacteriaceae bacterium 3519-10]
          Length = 291

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 21/207 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + +AIVT    TTR  +    + E   +  SDT G+ +  
Sbjct: 7   VNIVGKPNVGKSTLLNQLMGEKLAIVTQKAQTTRHRIFGIYNEEDLQIVFSDTPGVLDPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIG--------TK 328
             +++  +      +++AD+ L + +I  K E     +     I    +          +
Sbjct: 67  YGLQERMMDFVKDSLQDADVFLFIVDILDKSEPFEYLVDKLNKIPVPVLILVNKIDESNQ 126

Query: 329 SDL-------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            DL       +    +     IS+  G   E ++ K+KS+L          + + K   +
Sbjct: 127 EDLEKVMELWHERIPKAEILPISALKGFNTEIILPKLKSLLPENPPYYDKEMYTDKPERF 186

Query: 382 HLSQTVRYLEMAS-LNEKDCGLDIIAE 407
            +++ +R   + +   E    ++++ E
Sbjct: 187 FVNEAIREKILLNYEKEIPYSVEVVTE 213


>gi|225018650|ref|ZP_03707842.1| hypothetical protein CLOSTMETH_02600 [Clostridium methylpentosum
           DSM 5476]
 gi|224948558|gb|EEG29767.1| hypothetical protein CLOSTMETH_02600 [Clostridium methylpentosum
           DSM 5476]
          Length = 310

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 78/199 (39%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSL NAL    +AIVT+ P TTR  +T  L  E       DT G+ +  
Sbjct: 25  IAIVGKPNVGKSSLLNALTGHKIAIVTNRPQTTRTRITGVLTQEETQYVFIDTPGLLKAR 84

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKSDLYS 333
           + + ++ +K     V + D  +L+ E     +  E+   +      +  +    K D+  
Sbjct: 85  NKLGEKMVKTVRESVADVDAAVLVVEPTGEVNPAELDLIEGFKSNRMPAVLAINKIDILQ 144

Query: 334 T--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                          Y       IS+   +G++ L+ ++           P    + +  
Sbjct: 145 NKELLIERIAKFQDLYEFSAVVPISALERDGIDALLGELSKFAIESPHYFPDDAVTDQHE 204

Query: 380 LYHLSQTVRYLEMASLNEK 398
               ++ VR   + +L E+
Sbjct: 205 RVLAAEMVREKLLLNLREE 223


>gi|255282513|ref|ZP_05347068.1| GTP-binding protein Era [Bryantella formatexigens DSM 14469]
 gi|255266806|gb|EET60011.1| GTP-binding protein Era [Bryantella formatexigens DSM 14469]
          Length = 310

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 21/208 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI +  P TTR+ +      +   +   DT GI    
Sbjct: 19  VTLIGRPNVGKSTLMNHLIGQKIAITSRKPQTTRNRIQTVYTCDRGQIVFLDTPGIHRAK 78

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDFIFIGTKSD--- 330
           + + +  +      +   D+IL L E         +  +   K      + I  K D   
Sbjct: 79  NKLGEYMVNVAERTLSEVDVILWLVEPTTFIGAGEQHIVQQLKKVKQPVVLIINKIDTVQ 138

Query: 331 ------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     Y + Y+       S+  G+ L+E+I+ I   L            + +   
Sbjct: 139 KTEVAKFIDAYRKIYNFADIIAASALRGQNLQEIIDVIFKYLPYGPMFYDEDTITDQPQR 198

Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAEN 408
             +++ +R   +  L+E+      +A +
Sbjct: 199 QIVAEMIREKALRCLDEEIPHGIAVAID 226


>gi|126652809|ref|ZP_01724954.1| Era [Bacillus sp. B14905]
 gi|126590345|gb|EAZ84465.1| Era [Bacillus sp. B14905]
          Length = 271

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 79/196 (40%), Gaps = 24/196 (12%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R+GYK   I I+G  N GKS+  N +  + +AI++D P TTR+ +   L      +   D
Sbjct: 5   RSGYKSGFISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTSTDSQMIFID 64

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           T GI +    +    +K     +   D+IL +     K         E+    +     +
Sbjct: 65  TPGIHKPKHKLGDFMLKVAKNTLREVDVILFMVNAEQKLGKGDEFILEMLAGNSTPVFLV 124

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         +  +Y E Y+      IS+  G  +E L++ +   L +  +  P  
Sbjct: 125 INKIDQIHPDELLGIIESYKERYEFAEIIPISALQGNNVESLLDTLSKYLPDGPQYYPAD 184

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +S+ +R
Sbjct: 185 QVTDHPERFIISELIR 200


>gi|284929634|ref|YP_003422156.1| GTP-binding protein Era [cyanobacterium UCYN-A]
 gi|284810078|gb|ADB95775.1| GTP-binding protein Era [cyanobacterium UCYN-A]
          Length = 314

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 25/213 (11%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            + + +SS I     G   R+G+ I I+G  N GKS++ N L  + + I +++  TTR+ 
Sbjct: 4   NVSSTLSSKIPSTPQG--FRSGF-IGIIGRPNVGKSTIMNQLIGQKIVITSNVSQTTRNR 60

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---- 313
           L   L  +   +   DT GI +    + K  +K   + + + D+ILL+ + ++       
Sbjct: 61  LKGILTTDTEQMIFVDTPGIHKPHHNLGKIIVKNAKITINSVDIILLVVDSSTLSGGGDH 120

Query: 314 --ISFPKNIDFIFI--GTKSDLYSTYTEEYD--------------HLISSFTGEGLEELI 355
             I+  KN D   I    KSD  +   EE D                 S+ T EGL  L 
Sbjct: 121 YIINLLKNTDKTVIVGLNKSDKQTVKHEELDASYLNLIKEYKWPIVKFSALTKEGLGNLQ 180

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           N +   L         S+ + +   + + + +R
Sbjct: 181 NLLIKNLDYGPYYYHPSLATDQPEKFIIQELIR 213


>gi|159037544|ref|YP_001536797.1| small GTP-binding protein [Salinispora arenicola CNS-205]
 gi|189037157|sp|A8LYU3|DER_SALAI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|157916379|gb|ABV97806.1| small GTP-binding protein [Salinispora arenicola CNS-205]
          Length = 467

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 88/221 (39%), Gaps = 31/221 (14%)

Query: 198 FLKNDISSHISQGKL--GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L + I   + +      +  R   ++ ++G  N GKSSL N  + +  A+V  + GTT 
Sbjct: 175 ELLDVIMDRLPEAPKIIEDRPRGPRRVALVGRPNVGKSSLLNRFSGEVRAVVDAVAGTTV 234

Query: 256 DVLTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLLKEIN--- 309
           D +   +++ G   ++ DTAG+R+        E     RT   +E A++ ++L + +   
Sbjct: 235 DPVDSLVEIGGEAWQLVDTAGLRKRVGKASGTEYYASLRTASAIEAAEVAVVLLDASEVI 294

Query: 310 ---SKKEISFPKNIDFIFIG--TKSDLYST----------------YTEEYDHLISSFTG 348
               ++ +S   +     +    K DL                           +S+ TG
Sbjct: 295 SEQDQRILSMVTDAGRALVIAFNKWDLVDADRRYYLDREIERELRRIPWAIRLNLSAKTG 354

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
             +++L   ++  L++   ++P +  +    L  L Q   +
Sbjct: 355 RAVDKLAPALRKALASWETRVPTAQLNA--WLTALVQATPH 393



 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  +  A+V D+PG TRD +  D    G    + DT G     
Sbjct: 27  VAVVGRPNVGKSTLVNRLIGRRQAVVEDVPGVTRDRVPYDAQWNGRQFAVVDTGGWEPDA 86

Query: 282 DIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKN-IDFIFIGTKSDLYS 333
                    +    V  AD++L +        +++        ++    I +  K+D  S
Sbjct: 87  KDRAAAIAAQAETAVTTADVVLFVVDAVVGATDVDESAVKMLRRSAKPVILVANKADNSS 146

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              E            + +S+  G G  EL++ I   L    K +  
Sbjct: 147 IEMEAATLWSLGLGEPYPVSALHGRGSGELLDVIMDRLPEAPKIIED 193


>gi|282880853|ref|ZP_06289546.1| GTP-binding protein Era [Prevotella timonensis CRIS 5C-B1]
 gi|281305235|gb|EFA97302.1| GTP-binding protein Era [Prevotella timonensis CRIS 5C-B1]
          Length = 293

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGERISIATFKSQTTRHRIMGIVNTDDMQIVFSDTPGVLQPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKN-----IDFIFIGTKSD---- 330
             +++  +  +   + +AD++L + ++    +K I F +      I  I +  K D    
Sbjct: 67  YKMQEYMLAFSESALADADILLYVTDVVETPEKNIDFLEKVRKMTIPVILLINKIDQSNQ 126

Query: 331 -----LYSTY----TEEYDHLISSFTGEGLEELINKIKSILSN 364
                L   +           IS+    G++ L+N+I+ +L +
Sbjct: 127 KTLDQLVEKWHGILPNAEILPISASNKFGIDVLLNRIQELLPD 169


>gi|290968422|ref|ZP_06559961.1| GTP-binding protein Era [Megasphaera genomosp. type_1 str. 28L]
 gi|290781418|gb|EFD94007.1| GTP-binding protein Era [Megasphaera genomosp. type_1 str. 28L]
          Length = 299

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N + ++ V+IV+D   TTR+ +          +   DT GI +  
Sbjct: 11  VAVVGRPNVGKSTLINYIVRQKVSIVSDKAQTTRNRILCIYTDAAGQIVFLDTPGIHKPK 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY- 332
             + +      +  + + D +L L   N KK        E      +    +  K DL  
Sbjct: 71  HKLGEYMDAAAYQSLRDIDAVLFLVAGNEKKGPGDLFVAEKLNACKVPVFLLINKVDLLT 130

Query: 333 ------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                       S Y       +S+ TG+ +  ++ ++K IL    +  P  + + +   
Sbjct: 131 KAEILQKITEYRSVYPFAGIIPVSARTGDNVATVMGELKKILPPGPQYFPEDMVTDQPER 190

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++ +R   + SL E+
Sbjct: 191 VLAAEIIREKLLLSLREE 208


>gi|210615490|ref|ZP_03290617.1| hypothetical protein CLONEX_02833 [Clostridium nexile DSM 1787]
 gi|210150339|gb|EEA81348.1| hypothetical protein CLONEX_02833 [Clostridium nexile DSM 1787]
          Length = 396

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 15/165 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSS+ NA+  +D+AIV+DI GTT D +   ++L     V + DT G
Sbjct: 10  ERIHIGIFGKRNAGKSSVINAITGQDLAIVSDIKGTTTDPVLKSMELLPLGPVVLIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTK 328
           + +   +     IK+ +  +   D+ +L+ + +   ++++         KNI ++ +  K
Sbjct: 70  LDDEGKLGTLR-IKKAYQMLNKTDIAVLVVDGSIGMTEEDDRILTRIKEKNIPYVIVFNK 128

Query: 329 SDLYS-----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
            DL +     T  E +   +S+  G  ++ L   I S L  +  K
Sbjct: 129 MDLITDASVNTRQESHSLQVSAKNGYHIQALKELIASQLPKELTK 173


>gi|168335124|ref|ZP_02693232.1| GTP-binding protein Era [Epulopiscium sp. 'N.t. morphotype B']
          Length = 303

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ I I+G +N GKS+L N L  + +AI+++ P TTR  +   L    +     D
Sbjct: 3   KEFKSGF-ISIIGRANVGKSTLMNRLVGEKIAIMSNKPQTTRHQVRTILTTNDFQAVFID 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPK--NIDFIFI 325
           T GI   +  + K  +K     +   D+IL L E +++      + IS  K  N      
Sbjct: 62  TPGIHTPNTELGKFMVKAAHTTLNEVDIILFLIETDTRIGKLDEEIISKLKSVNSAVFLC 121

Query: 326 GTK---------SDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K          D    Y +  D      IS++ G  ++ LI+ I   L    K  P  
Sbjct: 122 INKIDGKDPQEVIDSIECYKDSMDFAEVIPISAYEGTNVDALIHCISKYLPAGPKFFPED 181

Query: 373 IPSHKRHLYHLSQTVR 388
           + + +     +++ +R
Sbjct: 182 MITDEPERQLVAELIR 197


>gi|257865833|ref|ZP_05645486.1| GTP-binding protein Era [Enterococcus casseliflavus EC30]
 gi|257872168|ref|ZP_05651821.1| GTP-binding protein Era [Enterococcus casseliflavus EC10]
 gi|257875461|ref|ZP_05655114.1| GTP-binding protein Era [Enterococcus casseliflavus EC20]
 gi|325569848|ref|ZP_08145842.1| GTP-binding protein Era [Enterococcus casseliflavus ATCC 12755]
 gi|257799767|gb|EEV28819.1| GTP-binding protein Era [Enterococcus casseliflavus EC30]
 gi|257806332|gb|EEV35154.1| GTP-binding protein Era [Enterococcus casseliflavus EC10]
 gi|257809627|gb|EEV38447.1| GTP-binding protein Era [Enterococcus casseliflavus EC20]
 gi|325156971|gb|EGC69139.1| GTP-binding protein Era [Enterococcus casseliflavus ATCC 12755]
          Length = 299

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 9   VAIVGRPNVGKSTLLNRVVGQKIAIMSDKAQTTRNKIQGVYTTDDAQLIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D+ L +   + K+        E           +  K D   
Sbjct: 69  HRLGDFMVETAYSALREVDVTLFMISADQKRGKGDDFIIERLRQSQTPVFLVINKIDKVH 128

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y+ + D      IS+  G   E L+  +   +    +  P    +     
Sbjct: 129 PDALLAIIEDYSSQMDFAEIVPISATEGNNFETLMKLLIDEMPEGPQYFPEDQITDHPEY 188

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 189 FIVSELVR 196


>gi|289450697|ref|YP_003475263.1| GTP-binding protein Era [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289185244|gb|ADC91669.1| GTP-binding protein Era [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 563

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 86/207 (41%), Gaps = 23/207 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           ++I++G+ + I+G  NAGKS+L NA++ + +AIV+    TTR+ +    +  G  +   D
Sbjct: 257 QLIKSGF-VSIVGRPNAGKSTLLNAISGQHLAIVSRKAQTTRNNIRSIYNARGVQMIFID 315

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI---------DFIF 324
           T G+ E D  + K   +     + N+D++LL+ +       S  +N            + 
Sbjct: 316 TPGLHEPDTELGKYMQEAAKKALSNSDILLLMIDACKAGPTSIEENCLKTAQSLRLPTVI 375

Query: 325 IGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              K DL                  +     IS+   +G+ EL+  +  +L    +  P 
Sbjct: 376 AFNKIDLIDKSALLPVLNRYRQLAPQAEIIPISAKLSDGVGELLRVLTGLLPTGPRYYPV 435

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEK 398
              + +       + +R   +   +E+
Sbjct: 436 DSFTDQSERQIAGEMIREQLLIYTHEE 462


>gi|319956465|ref|YP_004167728.1| GTP-binding protein era [Nitratifractor salsuginis DSM 16511]
 gi|319418869|gb|ADV45979.1| GTP-binding protein Era [Nitratifractor salsuginis DSM 16511]
          Length = 302

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 36/233 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L  + +A+V+     TR  + I +  +   +   DT G+ E +
Sbjct: 16  VAVVGRPNAGKSTLLNHLVGEKLAMVSKKAQATRKRMNIIVMHDNAQIIFVDTPGLHEKE 75

Query: 282 DIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF----PKNIDFIFIGTKSDLYST 334
            ++ K  ++     + +ADLIL    + +  ++ E        K    I + +K D  S 
Sbjct: 76  KLLNKFMLEEALKAIGDADLILFIAPVSDSTAEYERFLKRIEKKKTPHIVVLSKIDQASN 135

Query: 335 ---------YTEEYDHL-----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    Y +  +H       S     G EEL+++I   L          I + +   
Sbjct: 136 EKILSKIAEYQKFQEHFVALIPYSVKKNIGREELLDEIVKHLPEHPWLFDPEILTTENIR 195

Query: 381 YHLSQTVRYLEMASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432
               + +R      L +E     D++  +              ++ E+L+D +
Sbjct: 196 DIYRELIREALFEKLSDEIPYESDVV-ID-------------RIEEEELIDRV 234


>gi|294618704|ref|ZP_06698237.1| GTP-binding protein Era [Enterococcus faecium E1679]
 gi|291595047|gb|EFF26391.1| GTP-binding protein Era [Enterococcus faecium E1679]
          Length = 299

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +          +   DT GI +  
Sbjct: 9   VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGVYTTPEAQLIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNI--DFIFIGTKSD--- 330
             +    ++  +  ++  D +L +   + K+       I   KN+      I  K D   
Sbjct: 69  HRLGDFMVEAAYSALKEVDAVLFIISADQKRGRGDDFIIERLKNVHSPVYLIINKIDKIH 128

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y+ +        IS+  G  +E L++ + S +    +  P    +     
Sbjct: 129 PDELLGIIEDYSTQMPFAQVIPISATEGNNVERLMDVLVSEMPEGPQYFPDDQVTDHPEY 188

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 189 FIVSELIR 196


>gi|256845852|ref|ZP_05551310.1| GTP-binding protein Era [Fusobacterium sp. 3_1_36A2]
 gi|256719411|gb|EEU32966.1| GTP-binding protein Era [Fusobacterium sp. 3_1_36A2]
          Length = 298

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 72/191 (37%), Gaps = 24/191 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDL 331
            ++ +         +++ D+IL L + +                  K    I +  K DL
Sbjct: 66  HLLGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMSVMDRINENAKKKPKILLVNKVDL 125

Query: 332 YSTYTEEY--------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            S   +E                   S     G+ +L+  +   L    K  P  + +  
Sbjct: 126 ISDEQKEEKLKEIEEKLGEFNKIIFASGMYSFGISQLLEALDPYLEEGVKYYPDDMYTDM 185

Query: 378 RHLYHLSQTVR 388
                +++ VR
Sbjct: 186 STYRIITEIVR 196


>gi|256599907|pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
           End Of 16s Rrna
          Length = 308

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 78/204 (38%), Gaps = 27/204 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRE- 279
           + I+G  N GKS+L N L    V+I++   GTTR  +    ++     +   DT GI E 
Sbjct: 13  VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF----PKNIDFIFIGTKS 329
              D++    ++     +E AD+IL + +         +EI      P N   I +  K 
Sbjct: 73  KKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKI 132

Query: 330 D----------LYSTYTEEYD-----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D          L     +++        IS+  G  L+EL+  I   L       P  + 
Sbjct: 133 DKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMI 192

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           +        ++ VR   M    E+
Sbjct: 193 TDLPLRLLAAEIVREKAMMLTREE 216


>gi|71907658|ref|YP_285245.1| GTP-binding protein Era [Dechloromonas aromatica RCB]
 gi|71847279|gb|AAZ46775.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Dechloromonas aromatica RCB]
          Length = 294

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           + IR+GY I I+G  N GKS+L N L  + ++IV+    TTR  +T  L  +       D
Sbjct: 2   KKIRSGY-IAIVGRPNVGKSTLLNRLVGEKISIVSRKAQTTRHRITGILTNDDAQFVFVD 60

Query: 274 TAGIRET-DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEI---SFPKNIDFIFIG 326
           T G +    + + +   +     + + D++L L E    ++K +      PK+   I + 
Sbjct: 61  TPGFQTKFSNALNRAMNRGVTQTLNDVDVVLFLIEAGRYDAKDKAVVRLLPKDRPVILVV 120

Query: 327 TKSDLYSTYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            K+D     +  +                 IS+  G+  +EL+ + +  L N+    P  
Sbjct: 121 NKTDQIKDRSSLFPFLAEVSADHDYAAVVPISAAKGKQTDELLAEARKHLPNEGLMFPED 180

Query: 373 IPSHKRHLYHLSQTVR 388
             + K   +  S+ +R
Sbjct: 181 ELTDKSERFLASEYIR 196


>gi|23099406|ref|NP_692872.1| GTP-binding protein [Oceanobacillus iheyensis HTE831]
 gi|81746143|sp|Q8EPY0|ERA_OCEIH RecName: Full=GTPase Era
 gi|22777635|dbj|BAC13907.1| GTP-binding protein (Era/TrmE family) [Oceanobacillus iheyensis
           HTE831]
          Length = 300

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +  + +AI++D   TTR+ +          +   DT GI +  
Sbjct: 10  LSIIGRPNVGKSTFMNKVIGQKIAIMSDKAQTTRNKIQGVFTTNDAQMIFIDTPGIHKPK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY- 332
             +    ++     +   D IL +   +           ++    N     I  K DL  
Sbjct: 70  HRLGDFMVQIAEDTLNEVDSILFMINADEGYGRGDQYIIDLLQKVNSPVFLIINKIDLIH 129

Query: 333 ------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                       S Y  E    IS+  G  ++ L++ +K  L    +  P    +     
Sbjct: 130 PDQLLPLIEKYKSLYDFEEIIPISALEGNNVDHLVDVLKEHLPEGPQYYPEDQVTDHPER 189

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 190 FVISELIR 197


>gi|184155316|ref|YP_001843656.1| GTP-binding protein [Lactobacillus fermentum IFO 3956]
 gi|227514585|ref|ZP_03944634.1| GTP-binding protein Era [Lactobacillus fermentum ATCC 14931]
 gi|260662170|ref|ZP_05863066.1| GTP-binding protein Era [Lactobacillus fermentum 28-3-CHN]
 gi|183226660|dbj|BAG27176.1| GTP-binding protein [Lactobacillus fermentum IFO 3956]
 gi|227086996|gb|EEI22308.1| GTP-binding protein Era [Lactobacillus fermentum ATCC 14931]
 gi|260553553|gb|EEX26445.1| GTP-binding protein Era [Lactobacillus fermentum 28-3-CHN]
          Length = 301

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 83/221 (37%), Gaps = 24/221 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L N +  + VAI++++  TTR+ +      +   +   DT 
Sbjct: 6   YKSGF-VALIGRPNVGKSTLLNYMVGQKVAIMSNVAQTTRNKIQGIYTSDEAQIVFIDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGT 327
           GI +    +     +     ++  D IL +   N K+       I   K        +  
Sbjct: 65  GIHKPQTRLGDFMERSALSALDEVDAILFVVPANEKRGAGDNFIIERLKKVQQPIYLVVN 124

Query: 328 KS---------DLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K          D+ + Y           +S+  G  +  LIN +   L    +  P    
Sbjct: 125 KIDQVNPNDLPDIIAQYEGALPFKKVVPVSALQGNNVNTLINDLVDQLPTGPQYYPADQV 184

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
           S     + +++ +R  E   LN ++     +A ++      
Sbjct: 185 SDHPERFVIAEMIR--EKVFLNTREEVPHSVAIDVTSIQRE 223


>gi|269798051|ref|YP_003311951.1| GTP-binding protein Era [Veillonella parvula DSM 2008]
 gi|269094680|gb|ACZ24671.1| GTP-binding protein Era [Veillonella parvula DSM 2008]
          Length = 299

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + ++G  N GKS+L NAL    +AIV+D   TTR+ +      E   +   D
Sbjct: 5   EHFKSGF-VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDESKQIVFMD 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFI 325
           T G+ +    + +  +      ++  + +L +   N K+       I   K   +    +
Sbjct: 64  TPGVHKPKHKLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLV 123

Query: 326 GTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D                 Y       IS+   E L E++  ++  L    +  P  
Sbjct: 124 VNKIDTLKKEELLEAIVSYQDAYPFAGVIPISAKDKENLSEILKVLEETLPEGPQYFPED 183

Query: 373 IPSHKRHLYHLSQTVR 388
           + + +     +S  VR
Sbjct: 184 MITDQPERLIISDIVR 199


>gi|227498623|ref|ZP_03928767.1| GTP-binding protein era [Acidaminococcus sp. D21]
 gi|226904079|gb|EEH89997.1| GTP-binding protein era [Acidaminococcus sp. D21]
          Length = 306

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  NAGKS+L + L  +  AIV+D P TTR+ +   L  E   +   DT G+ +  
Sbjct: 13  IAVIGRPNAGKSTLIDKLIGEKAAIVSDRPQTTRNRILCILSTEKAQLIFLDTPGLHKPK 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSDLY- 332
           D + +  +K     +++ D +L + +   K+       +   K   +  I +  K DL  
Sbjct: 73  DKLGEHMVKAAEDSLKDVDAVLYVVDATEKRGKGEAYILERLKKVQVPVILVLNKVDLIN 132

Query: 333 --STYTEEYDHLISSFTGEGLEE-----------LINKIKSILSNKFKKLPFSIPSHKRH 379
                    D    ++   G+             LI ++  ++       P  + + +  
Sbjct: 133 QKENLLPRIDAFQKAYPFHGIMTLSALEDRDFTPLIEELTGLMPEGPSFYPEDLYTDQTE 192

Query: 380 LYHLSQTVR 388
              +S+ +R
Sbjct: 193 RVMVSEIIR 201


>gi|269122927|ref|YP_003305504.1| GTP-binding protein Era [Streptobacillus moniliformis DSM 12112]
 gi|268314253|gb|ACZ00627.1| GTP-binding protein Era [Streptobacillus moniliformis DSM 12112]
          Length = 299

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 23/180 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ I I+G  N GKS+L N L  + VAIV+D  GTTRD +   ++         DT 
Sbjct: 1   MKSGF-ISIVGRPNTGKSTLINKLIDEKVAIVSDKAGTTRDQIRGIVNKGENQYIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           GI +   ++ +         +   DLIL L +   +         E           I  
Sbjct: 60  GIHKPKHLLGEYMTNLAIESLNECDLILFLLDGTKEIGTGDIFVNENIRNSKTPTYVIIN 119

Query: 328 KSDLYSTYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D  S                  E    +S+  G G+ ++    +  LSN     P   
Sbjct: 120 KIDKMSDEELNNKVEEIREKLGEFEGIITMSAAYGIGIHKIFEVCEKYLSNDIWFYPEDY 179


>gi|281421767|ref|ZP_06252766.1| GTP-binding protein Era [Prevotella copri DSM 18205]
 gi|281404262|gb|EFB34942.1| GTP-binding protein Era [Prevotella copri DSM 18205]
          Length = 293

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 81/187 (43%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTDDMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKN-----IDFIFIGTKSDL--- 331
             +++  +  +   + +AD++L + ++  N +K + F +      I  + +  K D    
Sbjct: 67  YKMQEMMLAFSESALADADVLLYVTDVIENPEKNMEFLEKVKKMQIPVLLLINKIDQSDP 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                     +S         IS+    G + L+ +IK +L            + K   +
Sbjct: 127 KKLGDIVEKWHSLLPNAEILPISAKNKFGTDMLLKRIKELLPESPAFFDKDQLTDKPARF 186

Query: 382 HLSQTVR 388
            +S+ +R
Sbjct: 187 FVSEIIR 193


>gi|171780162|ref|ZP_02921066.1| hypothetical protein STRINF_01950 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281510|gb|EDT46945.1| hypothetical protein STRINF_01950 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 298

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 80/201 (39%), Gaps = 22/201 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 7   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDTEQIVFIDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKS---- 329
             +    ++  +  +   D +L +   + K+        E     NI  I +  K     
Sbjct: 67  TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMIIERLKAANIPVILVINKIDKVH 126

Query: 330 ---------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +E+L+N +K  L   F+  P    +     
Sbjct: 127 PDQLLEQIDDFRSQMDFKEIVPISALQGNNVEKLLNILKDNLEEGFQYFPEDQITDHPER 186

Query: 381 YHLSQTVRYLEMASLNEKDCG 401
           + +S+ +R  ++  L E++  
Sbjct: 187 FLVSEMIRE-KILKLTEQEVP 206


>gi|291546834|emb|CBL19942.1| GTP-binding protein Era [Ruminococcus sp. SR1/5]
          Length = 302

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 84/213 (39%), Gaps = 22/213 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N L  + +AI ++ P TTR+ +      +   +   DT G
Sbjct: 6   RSGF-VAIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNKIQTVYTCDEGQIVFLDTPG 64

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTK 328
           I +  + + +  ++     ++  D I+ L E ++          E      +  I I  K
Sbjct: 65  IHKAKNKLGEYMVQVAERTLKEVDAIMWLVEPSTFVGAGERHIAEQLQKVGVPVILIINK 124

Query: 329 SD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D            TY +  D       S+  G+  +++I  I   L            +
Sbjct: 125 IDTVKKEELLPAIDTYRKICDFAEIIPCSALRGKNTQDIIPSIFKYLPYGPMFYDEDTVT 184

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            +      ++ +R   + +L+E+      +A +
Sbjct: 185 DQPQRQIAAEIIREKALHALDEEIPHGIAVAID 217


>gi|15606987|ref|NP_214369.1| GTP-binding protein Era [Aquifex aeolicus VF5]
 gi|3913584|sp|O67800|ERA_AQUAE RecName: Full=GTPase Era
 gi|2984240|gb|AAC07768.1| GTP-binding protein Era [Aquifex aeolicus VF5]
          Length = 301

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 78/204 (38%), Gaps = 27/204 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRE- 279
           + I+G  N GKS+L N L    V+I++   GTTR  +    ++     +   DT GI E 
Sbjct: 6   VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 65

Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF----PKNIDFIFIGTKS 329
              D++    ++     +E AD+IL + +         +EI      P N   I +  K 
Sbjct: 66  KKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKI 125

Query: 330 D----------LYSTYTEEYD-----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D          L     +++        IS+  G  L+EL+  I   L       P  + 
Sbjct: 126 DKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMI 185

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           +        ++ VR   M    E+
Sbjct: 186 TDLPLRLLAAEIVREKAMMLTREE 209


>gi|163784387|ref|ZP_02179279.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880342|gb|EDP73954.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1]
          Length = 312

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +    V+IV+  P TTR  +      +   +   DT G+++  
Sbjct: 22  VALVGRPNVGKSTLLNNILGVKVSIVSPKPQTTRMRILGVKHDKDAQIIFLDTPGVQKGK 81

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI------DFIFIGTKSD-- 330
           DI+ K  ++     +E ADLI ++ +     +K ++    N         I I  K D  
Sbjct: 82  DILTKTVVESAVSSMEEADLIAMIIDATKGWTKNDLQIVDNYLKKLDKPVILIINKVDKV 141

Query: 331 -------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  L    T+ Y+      IS+  G  L+ L   IK  L       P +  +    
Sbjct: 142 PKELLLPLIEQSTKIYEFKEIVPISALKGVNLDRLTQVIKKYLPESPPLFPENQITDLPL 201

Query: 380 LYHLSQTVRYLEMASLNEK 398
            + +++ +R      L E+
Sbjct: 202 KFQIAEIIREKAFNILKEE 220


>gi|169331621|ref|ZP_02860814.1| hypothetical protein ANASTE_00005 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259683|gb|EDS73649.1| hypothetical protein ANASTE_00005 [Anaerofustis stercorihominis DSM
           17244]
          Length = 302

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G +N GKS+L N L  + ++IV++ P TTR+ +          +   DT G  +  
Sbjct: 10  ISIVGRTNVGKSTLLNLLLGQKISIVSNRPQTTRNNIRCIRTTGTSQMVFIDTPGFHKPK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             +    ++      +  D+IL L E ++          E    +    I +  K D  +
Sbjct: 70  SKLSDYMVEVAGESYKEVDVILFLVEEDTTIGKGDEFLIEKLKKEKTPVILVINKIDKIT 129

Query: 334 TYT--------EEYDH-----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                      E+YD       IS+  GE + EL+  I+  L       P  + + +   
Sbjct: 130 KEEILGKIKLYEKYDFIKEIVPISAMKGENINELVEVIEKYLPQGPMYFPEDMVTDRSER 189

Query: 381 YHLSQTVRYLEMASLNEK 398
           + +S+ +R   + SL E+
Sbjct: 190 FVISELIREKILRSLKEE 207


>gi|319901975|ref|YP_004161703.1| iron-only hydrogenase maturation protein HydF [Bacteroides
           helcogenes P 36-108]
 gi|319417006|gb|ADV44117.1| iron-only hydrogenase maturation protein HydF [Bacteroides
           helcogenes P 36-108]
          Length = 402

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD--LEGYLVKISDTA 275
           N   I I G  N+GKSSL NAL  +D A+V+ +PGTT D +   ++  L G      DT 
Sbjct: 14  NRLHIAIFGRRNSGKSSLVNALTGQDTALVSSVPGTTTDPVMKAMEVHLLG-SCLFIDTP 72

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSD 330
           G  + ++ + +  ++RT   VE  D+ LLL E     E  +      + I  + +  K D
Sbjct: 73  GFDDDENKLGEMRVERTLQIVERTDIALLLCEDGGILEKEWFGMLTERKIPIVPVLNKFD 132

Query: 331 L----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           L                +Y  ++S+    G++ +   I   L   F +   +
Sbjct: 133 LRTDVDRLASDIERIFGQYPVIVSAQKLIGIQNIFRAILEKLPEDFGEQTIT 184


>gi|300812180|ref|ZP_07092622.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|313123894|ref|YP_004034153.1| GTP-binding protein era-like protein [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|300496816|gb|EFK31896.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|312280457|gb|ADQ61176.1| GTP-binding protein era-like protein [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|325686031|gb|EGD28089.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 301

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 83/200 (41%), Gaps = 21/200 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + VAI +  P TTR+ ++     +   V   DT GI ++ 
Sbjct: 12  VALVGRPNVGKSTLMNRLIGQKVAITSAKPQTTRNKISGIYTEDDMQVVFVDTPGIFKSH 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK-------KEISFPKNIDFIFIGTKSD---- 330
             +++   K +   +++ DL++ + +             +    +I    +  K D    
Sbjct: 72  SDLDEYMDKASLSSLKDVDLVMFMVDAKEAGKGEEYVAGLLKDLDIPVFLVINKIDQVHP 131

Query: 331 -----LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                +  +Y           IS+  G G+++L+  +K  L    +       + +   +
Sbjct: 132 NDLLPIIDSYQAVGKFAEFLPISARQGNGVDDLLKTLKDYLPEGPQYYASDEVTDRPEYF 191

Query: 382 HLSQTVRYLEMASLNEKDCG 401
            +++ +R  ++  L +++  
Sbjct: 192 VVAEMIRE-QILRLTDQEVP 210


>gi|149173742|ref|ZP_01852371.1| probable GTP-binding protein [Planctomyces maris DSM 8797]
 gi|148847272|gb|EDL61606.1| probable GTP-binding protein [Planctomyces maris DSM 8797]
          Length = 468

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKSS+FN LA   VAIV    G TRD +T  +  +    ++ DT GI  T
Sbjct: 5   KIAIVGRPNVGKSSIFNWLAGHRVAIVDPTAGVTRDRVTYLVHEKDRYFELVDTGGIGIT 64

Query: 281 DDIVEKEGIKRTFLE-VENADLILLLKEIN 309
           D     E I+R     ++ ADLIL + + +
Sbjct: 65  DSDDLSEDIERQIQVGIDEADLILFVVDGS 94



 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI I+G  N GKS+  NALA+ +  IV+++ GTTRD + I  + +       DT G+R+
Sbjct: 184 LKIAIVGRRNVGKSTFINALAESERMIVSEVAGTTRDSVDIRFEFDDKSFLAIDTPGVRK 243

Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKE-------INSKKEISFPKNI-DFIFIGTK 328
                + +E  G+ R    +  A+++L+  +       ++ +      +N    IF+  K
Sbjct: 244 RKSLANDIEFYGLTRAKRSIRRANVVLMFFDSQETVSKVDKQLVAEIDENHKPCIFVINK 303

Query: 329 SDLYSTYTEEYDHLISSFTGE 349
            DL        +      T +
Sbjct: 304 WDLGREKKMTSEKWDEYLTSQ 324


>gi|104774144|ref|YP_619124.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514234|ref|YP_813140.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122275034|sp|Q04A20|ERA_LACDB RecName: Full=GTPase Era
 gi|122983938|sp|Q1G9W6|ERA_LACDA RecName: Full=GTPase Era
 gi|103423225|emb|CAI98053.1| GTP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116093549|gb|ABJ58702.1| GTPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325125924|gb|ADY85254.1| GTP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 301

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 83/200 (41%), Gaps = 21/200 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + VAI +  P TTR+ ++     +   V   DT GI ++ 
Sbjct: 12  VALVGRPNVGKSTLMNRLIGQKVAITSAKPQTTRNKISGIYTEDDMQVVFVDTPGIFKSH 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK-------KEISFPKNIDFIFIGTKSD---- 330
             +++   K +   +++ DL++ + +             +    +I    +  K D    
Sbjct: 72  SDLDEYMDKASLSSLKDVDLVMFMVDAKEAGKGEEYVAGLLKDLDIPVFLVINKIDQVHP 131

Query: 331 -----LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                +  +Y           IS+  G G+++L+  +K  L    +       + +   +
Sbjct: 132 NELLPIIDSYQAVGKFAEFLPISARQGNGVDDLLKTLKDYLPEGPQYYASDEITDRPEYF 191

Query: 382 HLSQTVRYLEMASLNEKDCG 401
            +++ +R  ++  L +++  
Sbjct: 192 VVAEMIRE-QILRLTDQEVP 210


>gi|220932765|ref|YP_002509673.1| small GTP-binding protein [Halothermothrix orenii H 168]
 gi|219994075|gb|ACL70678.1| small GTP-binding protein [Halothermothrix orenii H 168]
          Length = 411

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 21/171 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N GKS+L N L  +++A+V+D+PGTT D +   ++L     V + DTAG
Sbjct: 8   NRPHIAVFGRRNVGKSTLINTLTNQELALVSDVPGTTTDPVYKSMELLPLGPVVMIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEI---SFPKNIDFIFIGTK 328
           I +   +  K  IK+T   +   DL +L+ +      N +K++       NI  + +  K
Sbjct: 68  IDDVGSLG-KLRIKKTREVIRRTDLAILVIDPFHGAGNYEKDLYNKLQDNNIPVVVVINK 126

Query: 329 SDLYSTYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKK 368
            D      ++               +S+ +G G+EEL   + + +    ++
Sbjct: 127 IDRVKGIKQDLLDKVKLLFGVTPIKVSAHSGTGIEELREVLVNRVPRDHEQ 177


>gi|317504952|ref|ZP_07962901.1| GTP-binding protein Era [Prevotella salivae DSM 15606]
 gi|315663944|gb|EFV03662.1| GTP-binding protein Era [Prevotella salivae DSM 15606]
          Length = 293

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 20/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ E   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTEDCQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKN-----IDFIFIGTKSDL--- 331
             +++  +  +   +++AD++L + ++  N +K I F        I  I +  K D    
Sbjct: 67  YKMQEMMLAFSESALKDADILLYVTDVVENPEKNIDFLDKVKQLPIPVILLINKIDESNQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                     +S         IS+    G+E L+ +IK +L        
Sbjct: 127 KELGTIVTKWHSLLPNAEILPISAKNKFGVELLMKRIKELLPESPAYFD 175


>gi|313893315|ref|ZP_07826890.1| ribosome biogenesis GTPase Era [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442211|gb|EFR60628.1| ribosome biogenesis GTPase Era [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 299

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 74/199 (37%), Gaps = 22/199 (11%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E  ++G+ + ++G  N GKS+L NAL    +AIV+D   TTR+ +      E   + 
Sbjct: 2   NNNEHFKSGF-VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDEAKQIV 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDF 322
             DT G+ +    + +  +      ++  + +L +   N K+        E      +  
Sbjct: 61  FMDTPGVHKPKHKLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLQRVKVPV 120

Query: 323 IFIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             +  K D                 Y       IS+   E L E++  ++  L    +  
Sbjct: 121 FLVVNKIDTLKKEELLEAIVSYQNAYPFAGVIPISAKDKENLPEILKVLEETLPEGPQYF 180

Query: 370 PFSIPSHKRHLYHLSQTVR 388
           P  + + +     +S  VR
Sbjct: 181 PEDMITDQPERLIISDIVR 199


>gi|34764123|ref|ZP_00144997.1| GTP binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27886109|gb|EAA23411.1| GTP binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 298

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 72/191 (37%), Gaps = 24/191 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDL 331
            ++ +         +++ D+IL L + +                  K    I +  K DL
Sbjct: 66  HLLGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENAKKKPKILLVNKVDL 125

Query: 332 YSTYTEEY--------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            S   +E                   S     G+ +L+  +   L    K  P  + +  
Sbjct: 126 ISDEQKEEKLKEIEEKLGEFNKIIFASGMYSFGISKLLEALDPYLEEGVKYYPDDMYTDM 185

Query: 378 RHLYHLSQTVR 388
                +++ VR
Sbjct: 186 STYRIITEIVR 196


>gi|332702330|ref|ZP_08422418.1| GTP-binding protein Era-like-protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552479|gb|EGJ49523.1| GTP-binding protein Era-like-protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 307

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 81/205 (39%), Gaps = 28/205 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+  N +  + VAIV+  P TTR+ ++     E   V   DT G+ +  
Sbjct: 12  VALMGPPNAGKSTFLNHVLGQKVAIVSPKPQTTRNQISGIWTTERGQVVFLDTPGVHQLR 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---------------KKEISFP------KNI 320
             + K  ++  +  V  ++++L+  +  +                + +  P         
Sbjct: 72  GKMNKFLLQSAWQAVAQSNVVLVFLDAAAYAGRLEKFSSESSPLTQGLQKPGLPLIVAVN 131

Query: 321 DFIFIGTKSDLYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               +  K+DL S      +          S+ TG+G+ EL+  + + L       P   
Sbjct: 132 KVDKVKNKADLLSLMARIAEVWPGAEIFPISALTGDGVPELLEHVLAKLPEGTAMFPEDQ 191

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            S     +  ++TVR     +L ++
Sbjct: 192 ISTVPMRFMAAETVREKLFIALRQE 216


>gi|296333313|ref|ZP_06875766.1| GTP-binding protein Era [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675182|ref|YP_003866854.1| GTP-binding protein Era [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296149511|gb|EFG90407.1| GTP-binding protein Era [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413426|gb|ADM38545.1| GTP-binding protein Era [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 301

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 22/198 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +   L         
Sbjct: 2   TNESFKSGF-VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIF 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNI--DFI 323
            DT GI +    +    +K     ++  DLIL +           +  I   + +     
Sbjct: 61  IDTPGIHKPKHKLGDFMMKVAQNTLKEVDLILFMINAEEGYGKGDEFIIEKLQKMSTPVF 120

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            I  K D         L   Y   Y       IS+  G  +E L+ +I++ L    +  P
Sbjct: 121 LIVNKIDKIHPDQLLLLIDEYRGRYPFKEIVPISALEGNNIETLLAQIEAYLPEGPQFYP 180

Query: 371 FSIPSHKRHLYHLSQTVR 388
               +     + +S+ +R
Sbjct: 181 SDQVTDHPERFIISELIR 198


>gi|256026685|ref|ZP_05440519.1| GTP-binding protein Era [Fusobacterium sp. D11]
 gi|289764681|ref|ZP_06524059.1| GTP binding protein [Fusobacterium sp. D11]
 gi|289716236|gb|EFD80248.1| GTP binding protein [Fusobacterium sp. D11]
          Length = 298

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 72/191 (37%), Gaps = 24/191 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDL 331
            ++ +         +++ D+IL L + +                  K    I +  K DL
Sbjct: 66  HLLGEYMTNIAVNILKDVDIILFLIDASKPIGTGDMFVMDRINENAKKKPKILLVNKVDL 125

Query: 332 YSTYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            S   +              +     S     G+ +L+  +   L    K  P  + +  
Sbjct: 126 ISDEQKEEKLKEIEEKLGNFDKIIFASGMYSFGISQLLEALDPYLEEGVKYYPDDMYTDM 185

Query: 378 RHLYHLSQTVR 388
                +++ VR
Sbjct: 186 STYRIITEIVR 196


>gi|123966675|ref|YP_001011756.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9515]
 gi|123201041|gb|ABM72649.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9515]
          Length = 303

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + +LG  N GKS+L N L  + + I + +  TTR+ L   L  E   +   DT 
Sbjct: 4   YKSGF-VTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNRLKGILTTEFGQIIFVDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           G+ +   ++ +  +K     ++  D+++L+ + + +        K+       +FI +  
Sbjct: 63  GVHKPHHLLGEILVKNAKSAIKGVDMVILVLDSSVEPGRGDEYIKDFLVSNKTEFIIVLN 122

Query: 328 KSDLYSTY--------------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL +                T +    +S+  G G  ELIN I + L           
Sbjct: 123 KWDLVNKEFKSLRLDQYRKVFGTSKSFQTVSASEGYGCSELINIILNFLPKGPMLYEEDT 182

Query: 374 PSHKRHLYHLSQTVR 388
              +     L+  +R
Sbjct: 183 ICDQPLDNLLADLIR 197


>gi|116748319|ref|YP_845006.1| GTP-binding protein Era [Syntrophobacter fumaroxidans MPOB]
 gi|116697383|gb|ABK16571.1| GTP-binding protein Era [Syntrophobacter fumaroxidans MPOB]
          Length = 307

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 74/189 (39%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N   ++ ++I    P TTR+ +   L   G+ +   DT GI    
Sbjct: 14  VALIGAPNVGKSTLLNRFLREKISITAPKPQTTRNRILGILTEPGFQIVFMDTPGIHRAK 73

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK----EISFPK----NIDFIFIGTKSD--- 330
           D   +  +      +  AD +  L EI        +         +   I +  K D   
Sbjct: 74  DRFNRVLVDTALATLGEADAVCFLIEIPEPDPEINDYILENLGRIDTPVILVINKIDALA 133

Query: 331 -------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  L   Y   +       +S+  GEG +EL+ ++ ++L    +  P    + +  
Sbjct: 134 DKSRLLPLIEKYRGRHSFHAVVPVSALQGEGTDELMTELVALLQEGPQYYPEDHLTDQHE 193

Query: 380 LYHLSQTVR 388
            + +++ +R
Sbjct: 194 RFLVAELIR 202


>gi|71274463|ref|ZP_00650751.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Xylella fastidiosa Dixon]
 gi|71901684|ref|ZP_00683760.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Xylella fastidiosa Ann-1]
 gi|170730565|ref|YP_001775998.1| GTP-binding protein Era [Xylella fastidiosa M12]
 gi|226741406|sp|B0U3D9|ERA_XYLFM RecName: Full=GTPase Era
 gi|71164195|gb|EAO13909.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Xylella fastidiosa Dixon]
 gi|71728554|gb|EAO30709.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Xylella fastidiosa Ann-1]
 gi|167965358|gb|ACA12368.1| GTP binding protein [Xylella fastidiosa M12]
          Length = 298

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 22/200 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           +I ++G  N GKS+L NAL    ++IV++ P TTR  L          + + DT G+ RE
Sbjct: 11  RIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIVLVDTPGLHRE 70

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------NIDFIFIGTKSD-- 330
               + +   +     +E+ D  LL+ E     E             I  + +  K D  
Sbjct: 71  QKHPMNRLMNRTARGSLEDVDAALLVTESTHWNEEDTLAYNLLNDTGIPVVLVINKIDRF 130

Query: 331 ------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                       +   +T    H +S+   +GLE L++ + ++L            + + 
Sbjct: 131 KDKSALLPLLTHINENHTFATIHPVSALKRKGLETLVSDLLALLPEGDPMFSEDEITDRS 190

Query: 379 HLYHLSQTVRYLEMASLNEK 398
             +  S+ VR   M  L E+
Sbjct: 191 QRFLASELVREQVMRQLGEE 210


>gi|282857683|ref|ZP_06266893.1| small GTP-binding protein [Pyramidobacter piscolens W5455]
 gi|282584468|gb|EFB89826.1| small GTP-binding protein [Pyramidobacter piscolens W5455]
          Length = 403

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 24/178 (13%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++     E +  G    I G  N+GKSSL NALA +  +IV+D+PGTT D +   ++L G
Sbjct: 3   LNDTPRSERLHIG----IFGRRNSGKSSLVNALAGQAASIVSDVPGTTADPVYKAMELRG 58

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN 319
                + DTAG  +   +     + +T    +  D+ L++    ++ E      +   K 
Sbjct: 59  VGPAVLIDTAGFDDEGGLGALR-VAKTREAADRTDVALMVFAGAARPEDLEWVGLLKSKG 117

Query: 320 IDFIFIGTKSDLYS------------TYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           +  I +  K D  S            T T      +S+  GEG+  L   + + L  +
Sbjct: 118 VPVIAVLNKIDRMSEDERGAALRSVKTATGLDAVPVSAANGEGVAALRETLLTALPER 175


>gi|7595274|gb|AAF64397.1|AF148553_1 hypothetical protein [Thiobacillus denitrificans]
          Length = 281

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 27/166 (16%)

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGI 289
           S+L NAL  ++  I  D PGTTRD + ++ +  G    + DTAG+R    +    EK  +
Sbjct: 1   STLVNALVGEERVIAFDQPGTTRDSIYVEFERGGKPYVLIDTAGVRRKGKVFETVEKFSV 60

Query: 290 KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEE--- 338
            +T   +E+A++++L+ +                       +    K D  S    +   
Sbjct: 61  IKTLQAIEDANVVVLVLDARENISEQDAHLAGFVLETGRALVVAVNKWDGLSPEQRDDVK 120

Query: 339 -------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                          + IS+  G+GLE L+  +++  +  F K+  
Sbjct: 121 RDIGRKLAFLDFARFNYISALKGKGLESLLKDVEAAHAAAFIKMST 166


>gi|301066560|ref|YP_003788583.1| GTPase [Lactobacillus casei str. Zhang]
 gi|300438967|gb|ADK18733.1| GTPase [Lactobacillus casei str. Zhang]
          Length = 300

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +  + +AI++    TTR+ +          +   DT GI +  
Sbjct: 9   VAIIGRPNVGKSTFVNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
           + ++    K     +   D IL + E + +K                    I  K DL  
Sbjct: 69  NELDTYMDKAALSTLNQVDAILFMVEADEEKGPGDGYIMRQLAEVKKPVYLIINKIDLVK 128

Query: 334 -------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                         Y       IS+  G  ++EL+  +   L    +  P    +     
Sbjct: 129 PDDLLPLIESYQHDYAFAQVFPISATMGNNVDELLTALTDALPVGPQYYPEDQLTDHPEY 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGELIR 196


>gi|153951852|ref|YP_001398571.1| GTP-binding protein EngA [Campylobacter jejuni subsp. doylei
           269.97]
 gi|166224323|sp|A7H4Z1|DER_CAMJD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|152939298|gb|ABS44039.1| GTPase family protein [Campylobacter jejuni subsp. doylei 269.97]
          Length = 460

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 103/240 (42%), Gaps = 29/240 (12%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL---GEIIRN 218
           + ++ ++       LD   E   +    + ++ D      D   +  +GK     E+ +N
Sbjct: 135 VKEIFNLSVTHNVGLDELYEWLEKFLHQEFLIPDEEENLEDFLEYYEEGKEFQFKEVDQN 194

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             ++ I+G  N GKSSL NAL K++ ++V+ I GTT D +   +  +  +++  DTAGIR
Sbjct: 195 HIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESIVHKDKVIEFVDTAGIR 254

Query: 279 ETDDIV--EKEGIKRTFLEVENADLILLLKE-------INSKKEISFPKNI-DFIFIGTK 328
           +   I   E+  + RT   + ++ + LL+ +       ++ +      K+    I +  K
Sbjct: 255 KRGKIQGLERFALNRTEKILSHSQIALLVLDTHEGFNELDERIAGLVVKHYLGVIIVLNK 314

Query: 329 S----------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                            D +          +S+ +G+ +  L++KI  I  N  +K+  S
Sbjct: 315 WDKSEMDFDKTVKELRLDRFKFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTS 374



 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD    ++ +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNKMARQRIAITSDISGTTRDANKTEIYIHSKKAMLIDSGGLDESD 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
           ++  K   K T    + +D+IL L +     +    +              +  K D   
Sbjct: 64  ELF-KNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDNKK 122

Query: 334 TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKF 366
                ++            S     GL+EL   ++  L  +F
Sbjct: 123 DEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFLHQEF 164


>gi|308049760|ref|YP_003913326.1| iron-only hydrogenase maturation protein HydF [Ferrimonas balearica
           DSM 9799]
 gi|307631950|gb|ADN76252.1| iron-only hydrogenase maturation protein HydF [Ferrimonas balearica
           DSM 9799]
          Length = 407

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 22/180 (12%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            Q   G        I ++G  NAGKSSL N L  + V+IV+D  GTT D +    +L   
Sbjct: 7   DQAPRGMRY----HIALVGRRNAGKSSLLNLLTGQAVSIVSDTAGTTTDAVNKPFELLPL 62

Query: 268 -LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE---INSKK----EISFPKN 319
             V   DTAGI +  ++ E   +  T   +  AD+ L + +   I +      E      
Sbjct: 63  GPVTFIDTAGIDDEGELGELR-VAATHKALNRADMALYVVDEQGITAPDRAFIEQQLALG 121

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLP 370
           +  + +  K+DL S    +              SS  G+G   +   +  +   + K  P
Sbjct: 122 LPMLLVFNKTDLQSPSEADLAWCQSHQLPVELASSVAGQGRTMICQTLYQLAPEELKAKP 181


>gi|224106171|ref|XP_002314070.1| predicted protein [Populus trichocarpa]
 gi|222850478|gb|EEE88025.1| predicted protein [Populus trichocarpa]
          Length = 489

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 15/132 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           I I+G  N GKSS+ NAL  +D  IV+ I GTTRD +  +    +G    + DTAGIR  
Sbjct: 218 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFVGPDGQKFLLIDTAGIRRR 277

Query: 281 DD------IVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIG 326
                   + E   + R F  +  +D++ L+ E  +          E    +    + + 
Sbjct: 278 AAVASSGSVTEALSVNRAFRGIRRSDVVALVIEAMACITEQDYRIAERIEKEGKGCLIVV 337

Query: 327 TKSDLYSTYTEE 338
            K D      ++
Sbjct: 338 NKWDTIPNKNQQ 349



 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 64/191 (33%), Gaps = 49/191 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK---------- 270
           K+ I+G  N GKS+LFN L   + AIV D PG TRD L        +             
Sbjct: 9   KVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSFWGEHEFMVVDTGGVVTV 68

Query: 271 ------------ISDTAGI-------RETDDIVEKEGI-KRTFLEVENADLILLLKEINS 310
                       IS T G+       RE         I K+    VE + +I+ L +  +
Sbjct: 69  SKSQANVMEDLAISTTIGMDGIPLASREAAVARMPSMIEKQATAAVEESSVIIFLVDGQA 128

Query: 311 KKEISFPK----------NIDFIFIGTKSDLYSTYTEEYDHLI---------SSFTGEGL 351
               +  +          N   I    K +       +              S+ +G G 
Sbjct: 129 GLTAADVEIADWLRRNYSNKCIILAVNKCESPRKGIMQASEFWSLGFSPLPISAISGTGT 188

Query: 352 EELINKIKSIL 362
            EL++ + S L
Sbjct: 189 GELLDLVCSRL 199


>gi|237745211|ref|ZP_04575692.1| GTP binding protein [Fusobacterium sp. 7_1]
 gi|229432440|gb|EEO42652.1| GTP binding protein [Fusobacterium sp. 7_1]
          Length = 298

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 72/191 (37%), Gaps = 24/191 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDL 331
            ++ +         +++ D+IL L + +                  K    I +  K DL
Sbjct: 66  HLLGEYMTNIAVKILKDVDIILFLIDASKPIGTGDIFVMDRINENAKKKPKILLVNKVDL 125

Query: 332 YSTYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            S   +              +     S     G+ +L+  +   L    K  P  + +  
Sbjct: 126 ISDEQKKEKLKEIEEKLGNFDKIIFASGMYSFGISQLLESLDPYLEEGVKYYPDDMYTDM 185

Query: 378 RHLYHLSQTVR 388
                +++ VR
Sbjct: 186 STYRIITEIVR 196


>gi|154248944|ref|YP_001409769.1| small GTP-binding protein [Fervidobacterium nodosum Rt17-B1]
 gi|154152880|gb|ABS60112.1| small GTP-binding protein [Fervidobacterium nodosum Rt17-B1]
          Length = 403

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 19/165 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
            I I+G  N GKSS  NAL  ++++IV+D PGTT D +   ++L     V + DT G+ +
Sbjct: 10  HISIVGRRNVGKSSFMNALTGQEISIVSDTPGTTTDPVHKAMELYPLGPVTLIDTPGLDD 69

Query: 280 TDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISFPK-----NIDFIFIGTKSDLYS 333
             ++ EK  +++       +D  IL++ +   + E+   K      I FI +  KSD+  
Sbjct: 70  VGELGEKR-VEKAIKAFYKSDAGILVVDDFPHEYEMKIKKLFDELEIPFIVVVNKSDILG 128

Query: 334 TYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFK 367
               E                SS   +G EE+   + SI+ +  +
Sbjct: 129 EKANEIAKEYEKIFSVPVFVVSSLGRQGFEEIGKTLNSIIPSDEE 173


>gi|186681007|ref|YP_001864203.1| GTP-binding protein Era [Nostoc punctiforme PCC 73102]
 gi|186463459|gb|ACC79260.1| GTP-binding protein Era [Nostoc punctiforme PCC 73102]
          Length = 318

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 82/210 (39%), Gaps = 22/210 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L  + +AI + I  TTR+ L   L      +   DT GI +  
Sbjct: 29  IGIVGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGILTTPEAQLIFVDTPGIHKPH 88

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD--- 330
             + +  ++   + +E+ D++L + +             E+        I    K+D   
Sbjct: 89  HQLGEVLVQNAKIAIESVDVVLFVVDGAVACGSGDRYIAELLSRSKTPVILGVNKTDQQP 148

Query: 331 -----LYSTYTE-----EYDH-LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                L  +Y +     E++    S+ T  GL +L   +   L       P  + + +  
Sbjct: 149 SDSQFLDDSYAQMAQSHEWEIVKFSAKTSAGLPQLQELLIEHLEIGPLYYPPDLITDQPE 208

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            + + + +R   +    E+      IA +L
Sbjct: 209 RFIMGELIREQILLLTREEVPHSVAIAIDL 238


>gi|315607419|ref|ZP_07882415.1| GTP-binding protein Era [Prevotella buccae ATCC 33574]
 gi|315250851|gb|EFU30844.1| GTP-binding protein Era [Prevotella buccae ATCC 33574]
          Length = 293

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 73/169 (43%), Gaps = 20/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ E   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTEDTQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKN-----IDFIFIGTKSDL--- 331
             +++  +  +   + +AD++L + ++  N +K + F        I  + +  K D    
Sbjct: 67  YKMQEMMLAFSESALADADVLLYVTDVVENPEKNVDFLDKVKKMSIPVLLLINKIDESDQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                     +S         IS+    G++ L+ +IK +L        
Sbjct: 127 KKLGDLVEKWHSLLPNAEILPISAKNKFGVDMLMRRIKELLPESPAYFD 175


>gi|228470610|ref|ZP_04055467.1| GTP-binding protein Era [Porphyromonas uenonis 60-3]
 gi|228307737|gb|EEK16713.1| GTP-binding protein Era [Porphyromonas uenonis 60-3]
          Length = 295

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 82/195 (42%), Gaps = 21/195 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G+ N GKS+L N L  + ++I+T    TTR  +   ++ +   V  SD
Sbjct: 3   EGYKSGF-VSIVGNPNVGKSTLMNYLVGERISIITSKAQTTRHRILGIVNSDRMQVVYSD 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNIDFIFIG 326
           T G+ +    +++     +   +E+ADL+L + +   ++       E     +   I + 
Sbjct: 62  TPGVLQPSYKLQERMRAYSEQALEDADLLLYVTDTMEERDKHHDFVERVQRLSCPIIIVI 121

Query: 327 TKSDL-------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K DL             +S   +     +S+     L  L  +I+ +L           
Sbjct: 122 NKVDLTEQKHLEELVDYWHSVIPQAEIIPVSALRQFNLAPLKKRIEELLPVSPPYFEQDA 181

Query: 374 PSHKRHLYHLSQTVR 388
            + +   + +S+ +R
Sbjct: 182 LTDRPARFFVSEIIR 196


>gi|217970712|ref|YP_002355946.1| GTP-binding protein Era [Thauera sp. MZ1T]
 gi|217508039|gb|ACK55050.1| GTP-binding protein Era [Thauera sp. MZ1T]
          Length = 309

 Score = 93.0 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 75/204 (36%), Gaps = 23/204 (11%)

Query: 207 ISQGKLGEI-IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           +S    GE   R G+ + I+G  N GKS+L N L  + ++IV+    TTR  +T  L   
Sbjct: 9   LSDQPTGEDGFRAGF-VAIVGRPNVGKSTLLNRLIGQKISIVSSKAQTTRHRVTGILTEP 67

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLKEI------NSKKEISFPK 318
           G      DT G +          + RT    + + DL+  + E       + K     P+
Sbjct: 68  GAQFVFVDTPGFQTHHRNALNRSMNRTVSQVLADVDLVFFVIEAGRFTEDDRKVLAVIPE 127

Query: 319 NIDFIFIGTKSD----------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSN 364
           +   I +  K D            +   E  D       S+  G  ++EL+     +L  
Sbjct: 128 SSKVILVINKVDQLKDKTRLLPFIAQVREARDFTEIVPLSAEKGRNVDELVKAATPLLPV 187

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVR 388
                     + +   +  S+ +R
Sbjct: 188 GTPMFEEDEITDRSERFLASEFLR 211


>gi|191638504|ref|YP_001987670.1| GTP-binding protein Era [Lactobacillus casei BL23]
 gi|226741221|sp|B3WEL1|ERA_LACCB RecName: Full=GTPase Era
 gi|190712806|emb|CAQ66812.1| GTP-binding protein era homolog [Lactobacillus casei BL23]
 gi|327382539|gb|AEA54015.1| GTP-binding protein Era [Lactobacillus casei LC2W]
 gi|327385736|gb|AEA57210.1| GTP-binding protein Era [Lactobacillus casei BD-II]
          Length = 300

 Score = 93.0 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +  + +AI++    TTR+ +          +   DT GI +  
Sbjct: 9   VAIIGRPNVGKSTFMNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
           + ++    K     +   D IL + E + +K                    I  K DL  
Sbjct: 69  NELDTYMDKAALSTLNQVDAILFMVEADEEKGPGDGYIMRQLAEVKKPVYLIINKIDLVK 128

Query: 334 -------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                         Y       IS+  G  ++EL+  +   L    +  P    +     
Sbjct: 129 PDDLLPLIESYQHDYAFAQVFPISATMGNNVDELLTALTDALPVGPQYYPEDQLTDHPEY 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGELIR 196


>gi|218441386|ref|YP_002379715.1| GTP-binding protein Era [Cyanothece sp. PCC 7424]
 gi|218174114|gb|ACK72847.1| GTP-binding protein Era [Cyanothece sp. PCC 7424]
          Length = 318

 Score = 93.0 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 23/197 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+L N L  + +AI + +  TTR+ L   L      +   D
Sbjct: 21  EGFKSGF-VAIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLQGILTTSEAQIIFVD 79

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFI-- 325
           T GI +    + K  +K   + +   DL+LL+ + + +        I   +      I  
Sbjct: 80  TPGIHKPHHELGKVLVKNAQMAINAVDLVLLVADSSIEAGGGDRYIIDLLEETKTPVILG 139

Query: 326 GTKSDLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             KSD      +  D                 S+ TG GL+ L + +   L       P 
Sbjct: 140 LNKSDQQPANFDPLDESYRQLAQFHQWPMVKFSALTGSGLDLLQSLLVEHLDPGPYYYPP 199

Query: 372 SIPSHKRHLYHLSQTVR 388
            + + +   + + + +R
Sbjct: 200 DLVTDQPERFIMGELIR 216


>gi|170017070|ref|YP_001727989.1| GTP-binding protein Era [Leuconostoc citreum KM20]
 gi|226741222|sp|B1MYE3|ERA_LEUCK RecName: Full=GTPase Era
 gi|169803927|gb|ACA82545.1| GTP-binding protein Era [Leuconostoc citreum KM20]
          Length = 303

 Score = 93.0 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 73/190 (38%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   V   DT G+ +  
Sbjct: 11  VAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDNAQVVFIDTPGVHKPQ 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + +    +K  F  +  AD I  + + +  +          ++         +  K DL 
Sbjct: 71  NSLGNFMVKSAFSALHEADAIWFVVDASMPRGRGDDFIISRLNEVTETPIYLLINKVDLI 130

Query: 333 S-----TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        E Y            IS+  G+ + EL++ + S L    +       +   
Sbjct: 131 AREELLAIIESYQVDAPTWTEVFPISATEGDNVPELLDNVVSHLDEGPQYFDADQLTDHP 190

Query: 379 HLYHLSQTVR 388
             + + + +R
Sbjct: 191 ERFVIGELIR 200


>gi|256425495|ref|YP_003126148.1| GTP-binding protein Era [Chitinophaga pinensis DSM 2588]
 gi|256040403|gb|ACU63947.1| GTP-binding protein Era [Chitinophaga pinensis DSM 2588]
          Length = 289

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 19/186 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G +NAGKS+L NAL  + +AIV+    TTR  +T  +    Y +  SDT GI +  
Sbjct: 7   VNIFGKANAGKSTLMNALVGEKLAIVSPKVQTTRHRITGVVTTPEYQIVFSDTPGIIDPR 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTY 335
             + ++ +      +E+AD+ +L+ ++    E       S       I +  KSDL    
Sbjct: 67  YRLHEKMMGAVKSALEDADVAMLIMDVKDNLEENLSLFASLKLKARTILVLNKSDLLMKE 126

Query: 336 -------------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                          E   LIS+  G+G+  L+  I  +L       P    + K   + 
Sbjct: 127 ELDVLVKKCEEWGKAEKVVLISAMQGKGVPALLQTIVGMLPESEPFYPEDTLTDKSTRFF 186

Query: 383 LSQTVR 388
           + + VR
Sbjct: 187 VGEIVR 192


>gi|158316815|ref|YP_001509323.1| small GTP-binding protein [Frankia sp. EAN1pec]
 gi|158112220|gb|ABW14417.1| small GTP-binding protein [Frankia sp. EAN1pec]
          Length = 462

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 19/165 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D    G    + DT G     
Sbjct: 28  LAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDAVWNGRRFTLVDTGGWEPDA 87

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTK----- 328
             +      +    ++ AD +L + +          +   +        I    K     
Sbjct: 88  RGLAARVSDQARAALDTADGVLFVIDATVGATDADEAVARVLHRSGRPVILAANKVDDAR 147

Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
                + L+S    E  + +S+  G G  +L++ + ++L    ++
Sbjct: 148 AEADAAALWSLGLGE-PYPVSALHGRGSGDLLDAVLAVLPEAPRE 191



 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 103/294 (35%), Gaps = 30/294 (10%)

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTH 167
           +    + R  +  +  L  A+ +  +I +         ++  +            +K+  
Sbjct: 86  DARGLAARVSDQARAALDTADGVLFVIDATVGATDADEAVARVLHRSGRPVILAANKVDD 145

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN--GYKIVIL 225
            R+  +A   +S         S         L + + + + +             ++ ++
Sbjct: 146 ARAEADAAALWSLGLGEPYPVSALHGRGSGDLLDAVLAVLPEAPRERFTEEDGPRRVALI 205

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDD 282
           G  N GKSSL N LA  + ++V D+ GTTRD +   + + G      DTAG+R   +   
Sbjct: 206 GRPNVGKSSLLNKLAGSERSLVHDVAGTTRDPVDELVTVGGETWMFIDTAGLRRRVKEAS 265

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIG--TKS----- 329
             E     RT   +E A++ ++L   +        + IS   +     +    K      
Sbjct: 266 GAEYYSSLRTASALEAAEVAIVLLAADEPVTEQDQRIISMVTDAGRALVLAFNKWDTLDT 325

Query: 330 ----DLYSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
               DL      E           IS+ TG   + L   +++ L +   ++P  
Sbjct: 326 ERRLDLEQEIVRELGRVAWAPRVNISARTGRATDRLAPALRTSLDSWGTRIPTG 379


>gi|312869116|ref|ZP_07729290.1| ribosome biogenesis GTPase Era [Lactobacillus oris PB013-T2-3]
 gi|311095362|gb|EFQ53632.1| ribosome biogenesis GTPase Era [Lactobacillus oris PB013-T2-3]
          Length = 301

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 77/194 (39%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L N +  + VAI++++  TTR+ +      +   +   DT 
Sbjct: 6   YKSGF-VALIGRPNVGKSTLLNYIVGQKVAIMSNVAQTTRNKIQGIYTSKDAQIIFIDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGT 327
           G+ +    +     + T   ++  D I+ +     K+       I   K        +  
Sbjct: 65  GVHKPATKLGDFMERSTLSALDEVDAIVYVVSATEKRGPGDNFIIERLKQVQQPIYLVVN 124

Query: 328 KSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D         +   Y           +S+  G  + ELIN++ + L N  +  P    
Sbjct: 125 KIDQVHPNDLPGIVDQYKGSLPFKGIIPVSALQGNNVNELINELVAGLPNGPQYYPADQI 184

Query: 375 SHKRHLYHLSQTVR 388
           S     + +++ +R
Sbjct: 185 SDHPERFVIAEMIR 198


>gi|239631408|ref|ZP_04674439.1| GTPase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239525873|gb|EEQ64874.1| GTPase [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 300

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +  + +AI++    TTR+ +          +   DT GI +  
Sbjct: 9   VAIIGRPNVGKSTFMNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
           + ++    K     +   D IL + E + +K                    I  K DL  
Sbjct: 69  NELDTYMDKAALSTLNQVDAILFMVEADEEKGPGDGYIMRQLAEVKKPVYLIINKIDLVK 128

Query: 334 -------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                         Y       IS+  G  ++EL+  +   L    +  P    +     
Sbjct: 129 PDDLLPLIESYQHDYAFAQVFPISATMGNNVDELLTALTDALPVGPQYYPEDQLTDHPEY 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGELIR 196


>gi|167749633|ref|ZP_02421760.1| hypothetical protein EUBSIR_00591 [Eubacterium siraeum DSM 15702]
 gi|167657386|gb|EDS01516.1| hypothetical protein EUBSIR_00591 [Eubacterium siraeum DSM 15702]
 gi|291530788|emb|CBK96373.1| GTP-binding protein Era [Eubacterium siraeum 70/3]
 gi|291557707|emb|CBL34824.1| GTP-binding protein Era [Eubacterium siraeum V10Sc8a]
          Length = 302

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G  NAGKS+L N L  + +AIV+D P TTR  +   L          DT G+ +  
Sbjct: 9   VAIAGRPNAGKSTLTNYLVGEKIAIVSDKPQTTRTRINGVLTKGETQYVFIDTPGMHKAK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK-KEISF-------PKNIDFIFIGTKSD--- 330
           + +  + +K     V + D+IL++ +   K   I          +  D + +  K D   
Sbjct: 69  NKLSDQMLKSIRESVTDVDVILMMADATKKISPIEHNLIDSFKDRKTDVVLLINKVDLVK 128

Query: 331 -------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  L   Y+E YD      IS     G+EE++  I   +          +P+ +  
Sbjct: 129 DKSELLSLIKEYSELYDFKEIIPISVRQRIGVEEIMPVIDRYVKLSPHYFDDELPTDQAE 188

Query: 380 LYHLSQTVRYLEMASLNEK 398
              L++ VR   + ++NE+
Sbjct: 189 KVWLAEIVREKILRNMNEE 207


>gi|145594473|ref|YP_001158770.1| small GTP-binding protein [Salinispora tropica CNB-440]
 gi|189037159|sp|A4X692|DER_SALTO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|145303810|gb|ABP54392.1| small GTP-binding protein [Salinispora tropica CNB-440]
          Length = 467

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 88/221 (39%), Gaps = 31/221 (14%)

Query: 198 FLKNDISSHISQGKL--GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L + I   + +      +  R   ++ ++G  N GKSSL N  + +  A+V  + GTT 
Sbjct: 175 ELLDLILDRLPEAPKIVEDRPRGPRRVALVGRPNVGKSSLLNRFSGEIRAVVDAVAGTTV 234

Query: 256 DVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN--- 309
           D +   +++ G   ++ DTAG+R+        E     RT   +E A++ ++L + +   
Sbjct: 235 DPVDSLVEIGGEAWQLVDTAGLRKRVGQASGTEYYASLRTTSAIEAAEVAVVLLDASEVI 294

Query: 310 ---SKKEISFPKNIDFIFIG--TKSDLYST----------------YTEEYDHLISSFTG 348
               ++ +S   +     +    K DL                           +S+ TG
Sbjct: 295 SEQDQRILSMVTDAGRALVIAFNKWDLVDADRRYYLDREIERELRRIPWAIRLNLSARTG 354

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
             +++L   ++  L++   ++P +  +    L  L Q   +
Sbjct: 355 RAVDKLAPALRRALASWETRVPTAQLNA--WLTALVQATPH 393



 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 19/164 (11%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G  N GKS+L N L  +  A+V D+PG TRD +  D    G    + DT G         
Sbjct: 31  GRPNVGKSTLVNRLIGRRQAVVEDVPGVTRDRVPYDAQWNGRQFAVVDTGGWEPDAKDRA 90

Query: 286 KEGIKRTFLEVENADLILLL-------KEINSKKEISFPKN-IDFIFIGTKSD------- 330
                +    +  AD++L +        +++        ++    I +  K+D       
Sbjct: 91  AAIAAQAESAITTADVVLFVVDAVVGATDVDEAAVKMLRRSAKPVILVANKADNSSIEME 150

Query: 331 ---LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              L+S    E  + +S+  G G  EL++ I   L    K +  
Sbjct: 151 ASALWSLGLGE-PYPVSALHGRGSGELLDLILDRLPEAPKIVED 193


>gi|225873315|ref|YP_002754774.1| GTP-binding protein Era [Acidobacterium capsulatum ATCC 51196]
 gi|225791445|gb|ACO31535.1| GTP-binding protein Era [Acidobacterium capsulatum ATCC 51196]
          Length = 346

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 52/224 (23%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-------- 267
           +R+G+ + I+G  NAGKS+L NALA + VAIVT  P TTR+ +   +++           
Sbjct: 1   MRSGF-VSIVGRPNAGKSTLLNALAGEKVAIVTSKPQTTRNRIHGIVEVPAQNTKAGKRP 59

Query: 268 --LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------- 311
              +   DT G+ +  + +++  ++     +E  D+++ + + + +              
Sbjct: 60  AAQIVFVDTPGVHKPGNTLDRRMLQEVHAALETRDIVIWMVDASRRVALAEAAAAEGETK 119

Query: 312 --------------KEISFPKNIDFIFIGTKSDLYSTYTEEY-------------DHLIS 344
                          E+    +     +  K DL    T                   IS
Sbjct: 120 TQRDLLESNEDAFVFELIRKLDCPVFLVINKIDLVDRETLAPLIAELSRLHNFAEVFPIS 179

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           +     L+EL+ K+   L    +  P    + +   + +++ +R
Sbjct: 180 ARKRNSLDELLAKLVDYLPEGQRYFPEGQFTDQPERFLVAELIR 223


>gi|15838838|ref|NP_299526.1| GTP-binding protein Era [Xylella fastidiosa 9a5c]
 gi|13959361|sp|Q9PB97|ERA_XYLFA RecName: Full=GTPase Era
 gi|9107401|gb|AAF85046.1|AE004037_7 GTP binding protein [Xylella fastidiosa 9a5c]
          Length = 298

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 22/200 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           +I ++G  N GKS+L NAL    ++IV++ P TTR  L          + + DT G+ RE
Sbjct: 11  RIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIVLVDTPGLHRE 70

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------NIDFIFIGTKSD-- 330
               + +   +     +E+ D  LL+ E     E             I  + +  K D  
Sbjct: 71  QKHPMNRLMNRTARGSLEDVDAALLVTESTHWNEEDTLAYNLLNDTGIPVVLVINKIDRF 130

Query: 331 ------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                       +   +T    H +S+   +GLE L++ + ++L            + + 
Sbjct: 131 KDKSALLPFLTHINENHTFTTIHPVSALKRKGLETLVSDLLALLPEGDPMFSEDEITDRS 190

Query: 379 HLYHLSQTVRYLEMASLNEK 398
             +  S+ VR   M  L E+
Sbjct: 191 QRFLASELVREQVMRQLGEE 210


>gi|312880030|ref|ZP_07739830.1| GTP-binding protein Era [Aminomonas paucivorans DSM 12260]
 gi|310783321|gb|EFQ23719.1| GTP-binding protein Era [Aminomonas paucivorans DSM 12260]
          Length = 308

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 74/203 (36%), Gaps = 24/203 (11%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           +   G+  R+G  + +LG  N GKSSL NAL    +A V+    TTR V+   +      
Sbjct: 2   EPSNGKPFRSG-CVALLGRPNVGKSSLANALVGVKIAAVSPKAQTTRQVVRGIVQTPEAQ 60

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKN 319
           + + DT G+ E    + +  I++    +E    I  L E   ++         E      
Sbjct: 61  IVLVDTPGVHEPRHELGRFMIRQIREALEEVVGICFLVEATDQRLSSLDRRILEWIREAK 120

Query: 320 IDFIFIGTKSDLY--------------STYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                +  K DL                 Y  E    +S+  G  L+ L+ ++ S L   
Sbjct: 121 RPTALVVNKVDLLKSPEALWKVVALYQDAYPFEEIIPLSATRGSNLDVLLERMTSWLPES 180

Query: 366 FKKLPFSIPSHKRHLYHLSQTVR 388
               P  +   +   +   + +R
Sbjct: 181 EPLFPEDLLMDRTERFLAGEIIR 203


>gi|226311653|ref|YP_002771547.1| GTP-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226094601|dbj|BAH43043.1| probable GTP-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 305

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 82/227 (36%), Gaps = 23/227 (10%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +   K  +  ++G+ + I+G  N GKS+L N +    +AI+++ P TTR+ +T     E 
Sbjct: 1   MDNRKTKQSFKSGF-VSIVGRPNVGKSTLLNHIVGHKIAIMSNKPQTTRNKITAVHTTEE 59

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK-- 318
             +   DT GI +    +    +      +   DL+L + +   K+       I   K  
Sbjct: 60  GQIIFLDTPGIHKPQSKLGNYMVSVAENTLNEVDLVLFVVDATEKRGAGDDYIIERLKQV 119

Query: 319 NIDFIFIGTKSD---------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSNK 365
                 +  K D         +   Y + YD       S+  G     L   I   +   
Sbjct: 120 KTPVFLVINKIDKVHPEALLPIIDDYRKLYDFKQIVPISALEGNNTASLQQAILGEMEEG 179

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRL 411
               P    +     +  ++ +R  +   +  E    + ++ E ++ 
Sbjct: 180 PMYYPADQVTDHPERFVAAELIREKVLHLTREEVPHSIAVVIEEMKR 226


>gi|269791764|ref|YP_003316668.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099399|gb|ACZ18386.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 398

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 17/166 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  NAGKSSL NAL  +D A+V+  PGTT D +   ++L     V   DTAG
Sbjct: 7   NRLHIAIFGRRNAGKSSLINALTGQDAALVSSEPGTTTDPVMKAMELLPIGPVVFIDTAG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK-----EINSKKEISFP---KNIDFIFIGTK 328
           I +  ++ +   ++RT   ++  DL LL+      +++ ++        + I  + +  K
Sbjct: 67  IDDQGELGQLR-VERTRRVLDRTDLALLVVSPPVTDLSMEEGWLAELRGRGIPVVGVFNK 125

Query: 329 SDLYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFK 367
           SD      +            +S+ TG+G++EL   I+  +   ++
Sbjct: 126 SDQGELPVQWVSGRLGLRLTPVSALTGDGIQELKAAIQEAVPEGWE 171


>gi|153840641|ref|ZP_01993308.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810]
 gi|149745697|gb|EDM56827.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810]
          Length = 109

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G  N GKS+LFN L +   A+V D PG TRD       L+  +   + DT GI  T
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVIDTGGIDGT 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
           ++ VE +  +++   ++ AD++L L +     + +   
Sbjct: 65  EEGVETKMAEQSLAAIDEADVVLFLVDGRQTVDAALAD 102


>gi|75761490|ref|ZP_00741454.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74491029|gb|EAO54281.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 126

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 11/125 (8%)

Query: 327 TKSDLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSH 376
            K+DL      E              S    +G++EL   I  +           +  S+
Sbjct: 2   NKTDLPQAIDMERVTELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSN 61

Query: 377 KRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435
            RH+  L+Q  + + +     E    +D++  +L      LG+ITG    E L+D +FS+
Sbjct: 62  ARHIGLLTQAGQTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQ 121

Query: 436 FCIGK 440
           FC+GK
Sbjct: 122 FCLGK 126


>gi|148273155|ref|YP_001222716.1| GTP-binding protein EngA [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831085|emb|CAN02030.1| putative GTP-binding protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 502

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 27/176 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ILG  N GKSSL N  A ++  +V ++ GTTRD +   +++ G + +  DTAGIR  
Sbjct: 243 RVAILGRPNVGKSSLLNKAAGEERVVVNELAGTTRDPVDEQVEIAGKVWRFVDTAGIRRR 302

Query: 281 DDIVE---KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             + +        RT   +E A++ +++ +++           E+        +    K 
Sbjct: 303 MHLAQGADFYASLRTSAALEKAEVAVVMIDVSEVISEQDIRIIELVLESGRALVLAFNKW 362

Query: 330 DLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           DL       Y                   IS+ TG  +E+L+  +++ L +   ++
Sbjct: 363 DLLDDERRRYLEREIETDLAHVSWAPRVNISARTGRHMEKLVPALETALESWDTRI 418



 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 82/233 (35%), Gaps = 34/233 (14%)

Query: 150 MSGELSSLYGQWIDKLTHIRSF-IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHIS 208
           +   L        ++L   R+  + A L+  E +D                   + S   
Sbjct: 11  LDSGLHERLSSIDEELASQRAQTLRAGLEDYELDDED--------------LEVLESATD 56

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
                  +     + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G  
Sbjct: 57  DPDQVTYLPALPVLAVVGRPNVGKSALINRILGRREAVVEDTPGVTRDRVSYKAEHAGRW 116

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDF 322
             + DT G       +      +  + ++ AD +L + + N       +  +   +    
Sbjct: 117 FTLVDTGGWEPDAKGINASVAMQAEIAMDLADAVLFVVDANVGATSTDEHVVRLLRKTKK 176

Query: 323 IFI--GTKSD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
             I    K D          L+S    E  H +S+  G G+ +L++ +   L 
Sbjct: 177 TVILAANKVDDARQEPNAASLWSLGLGE-PHPVSALHGRGVADLLDLVLKTLP 228


>gi|295109168|emb|CBL23121.1| iron-only hydrogenase maturation protein HydF [Ruminococcus obeum
           A2-162]
          Length = 408

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 18/171 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I   G  NAGKSS+ NA+  +D+AIV+ + GTT D +   ++L     V I DT G
Sbjct: 10  ERVHISFFGKRNAGKSSVINAVTGQDLAIVSSVRGTTTDPVYKTMELLPLGPVMIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTK 328
           I +  ++     +++++  +   D+ +L+ +  +   ++E++       K I ++ +  K
Sbjct: 70  IDDEGELGALR-VRKSYQVLNKTDIAILVVDSTTGKGEEELALIHRFHKKGIPYLVVYNK 128

Query: 329 SDLYSTYT--------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            DL S              + L+S+  G  ++EL  KI ++      K P 
Sbjct: 129 IDLLSGEGIKDLAMSVRPGEVLVSAADGMNIQELKEKIATLKPEDTHKYPL 179


>gi|258593725|emb|CBE70066.1| GTP-binding protein (era) [NC10 bacterium 'Dutch sediment']
          Length = 300

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + V+IV+  P TTR  +     L G  +   DT GI ++ 
Sbjct: 11  VAIIGRPNVGKSTLMNRLLGQKVSIVSPRPQTTRTKIMGIRSLPGAQLIFLDTPGIDKSG 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY- 332
               +  +K     +E ADLIL + E             EI        +    K DL  
Sbjct: 71  GYFHRLMVKTATNSLEGADLILWIVEAPDPLSQGDKLILEILKRVTSPILLAVNKVDLVQ 130

Query: 333 ------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                       S         IS+  G+ +  L + +   L       P    + +   
Sbjct: 131 KESLLPTIDRFRSLLPFAEIVPISATKGDNVALLESLLVQYLPEGPPLYPPDQLTDQPDR 190

Query: 381 YHLSQTVR 388
           + +++ +R
Sbjct: 191 FIIAELIR 198


>gi|50365082|ref|YP_053507.1| GTP-binding protein Era [Mesoplasma florum L1]
 gi|50363638|gb|AAT75623.1| GTP-binding protein, cell cycle control [Mesoplasma florum L1]
          Length = 301

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 91/227 (40%), Gaps = 26/227 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           I++G+ I I+G  N GKS+L N +    ++IVT+   TTR+ +   L  + Y +   DT 
Sbjct: 4   IKSGF-ISIVGRPNVGKSTLLNKIIGHKISIVTNKAQTTRNNIRGILTEKEYQLIFVDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIG 326
           GI  + + +++         ++  D+++ +   +            E+S   +I  I + 
Sbjct: 63  GIHTSKNQIDRFMNSSAMRSMKEVDVVVFMAPADETIGKNDLFILNELSKKNDIKKILVI 122

Query: 327 TKSDLYSTYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKL-PF 371
           +K+D+ S                  +   + SS     +++LI  I   L          
Sbjct: 123 SKADVVSKEKLFLKATEWNTYEQIFDEIIITSSTENINIDKLIETIVGFLPETGHYFYDE 182

Query: 372 SIPSHKRHLYHLSQTVR-YLEMASLNEKDCGLDIIAENLRLASVSLG 417
              + + + + + + +R  + + +  E    + I+ + L      + 
Sbjct: 183 ESITDQPNRFAIREIIRESVLLKAGQEVPHSVAILVDELEETEDEIN 229


>gi|254527127|ref|ZP_05139179.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9202]
 gi|221538551|gb|EEE41004.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9202]
          Length = 303

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + +LG  N GKS+L N L  + + I + +  TTR+ L   L  E   +   DT 
Sbjct: 4   YRSGF-VTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNKLKGILTTENGQIIFVDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGT 327
           G+ +    + +  +K     +   D+++ + + +                    FI +  
Sbjct: 63  GVHKPHHRLGEILVKNAKSAINGVDMVIFVIDSSEAPGKGDEYILNFLIDNKTKFIVVLN 122

Query: 328 KSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL +     +                  S+  G+G  EL++ + + L    K      
Sbjct: 123 KWDLVNKEFRNFRLDQYRRFFGMNRNFQSVSASQGQGCSELVDMVLNFLPEGPKLYGEET 182

Query: 374 PSHKRHLYHLSQTVR 388
              +     LS  VR
Sbjct: 183 ICDQPLDNLLSDLVR 197


>gi|323490066|ref|ZP_08095287.1| GTP-binding protein Era-like protein (Bex protein) [Planococcus
           donghaensis MPA1U2]
 gi|323396362|gb|EGA89187.1| GTP-binding protein Era-like protein (Bex protein) [Planococcus
           donghaensis MPA1U2]
          Length = 305

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 24/199 (12%)

Query: 214 EIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           ++  NG+K   I I+G  N GKS+  N +  + +AI++D P TTR+ +   +      + 
Sbjct: 2   QLENNGFKSGFISIIGRPNVGKSTFLNRVVGQKIAIMSDKPQTTRNKVQGVVTTNDSQMI 61

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNID--F 322
             DT GI E    +    +K         D++L +           +  +   K ID   
Sbjct: 62  FIDTPGINEPRHKLGDFMLKVAKNTFREVDVLLFVASGVDRVGKEDRYVLEMLKGIDVPV 121

Query: 323 IFIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKL 369
             +  K D         +  +Y  E+D      IS+  G  +E L+ KI   L    +  
Sbjct: 122 FLVINKIDQVHPDNLPKIIESYRNEFDFAEAIPISALEGNNVETLLAKINERLPEGPQYY 181

Query: 370 PFSIPSHKRHLYHLSQTVR 388
           P    +     + +S+ +R
Sbjct: 182 PADQITDHPERFIISELIR 200


>gi|149277443|ref|ZP_01883584.1| GTP-binding protein [Pedobacter sp. BAL39]
 gi|149231676|gb|EDM37054.1| GTP-binding protein [Pedobacter sp. BAL39]
          Length = 292

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 19/186 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + ++I+T    TTR  +   ++ E Y +  SDT GI +  
Sbjct: 8   VSIIGKPNVGKSTLMNALIGEKLSIITPKAQTTRHRILGIVNEEEYQIVFSDTPGIIKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK------EISFPKNIDFIFIGTKSDLY--- 332
             ++   +      + +ADLIL + +IN +       E      I  I +  K D     
Sbjct: 68  YGLQDSMMTSVKGALTDADLILFVTDINEQHDENDVLEKIIDTTIPMIVLINKIDNATQE 127

Query: 333 ----------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                          +Y   IS+     LE +++++   L            + +   + 
Sbjct: 128 QVEEKSAFWQEKLNPKYIFAISALHQYNLEGIMDRVLDFLPEHPAYYDKEDLTDRNQRFF 187

Query: 383 LSQTVR 388
           +S+ +R
Sbjct: 188 VSEIIR 193


>gi|291279472|ref|YP_003496307.1| GTP-binding protein Era [Deferribacter desulfuricans SSM1]
 gi|290754174|dbj|BAI80551.1| GTP-binding protein Era [Deferribacter desulfuricans SSM1]
          Length = 297

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 86/208 (41%), Gaps = 22/208 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + V+I+++ P TTR  +      E Y +   DT GI    
Sbjct: 11  VSIIGRPNVGKSTLLNRLLGEKVSIISNKPNTTRTNIQGIKTGEDYQIIFIDTPGIHNAK 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS--KKEISFPKNI------DFIFIGTKSD--- 330
           D + +  ++     ++  D++ L+ E +    KE++F  N+          +  K D   
Sbjct: 71  DKINRLMVQNALDSLDMVDIVYLMVEPDEFIGKEMNFILNVLKKYNGVKYLLINKVDKST 130

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     ++     +Y   IS+  G  +++LI+     L    K       ++    
Sbjct: 131 KTRALNIANKIFEYLDFKYVLPISALKGINIDKLISLTVEDLPEGEKIFDEDYITNIPEK 190

Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAEN 408
             +++ VR  ++  + + +   D + E 
Sbjct: 191 LLIAEFVRE-QVFKILKDEVPYDTVVEC 217


>gi|325954893|ref|YP_004238553.1| GTP-binding protein Era-like-protein [Weeksella virosa DSM 16922]
 gi|323437511|gb|ADX67975.1| GTP-binding protein Era-like-protein [Weeksella virosa DSM 16922]
          Length = 295

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 22/215 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G+ N GKS+L N L K+ + I T    TTR  +   L  E Y +  SD
Sbjct: 5   ENFKSGF-VNIIGNPNVGKSTLMNLLMKERLVIATHKAQTTRHRIKGILTGENYQIVFSD 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNIDFIFIG 326
           T G+ +    ++   +      + +AD++L + E+  K+       E     N+  + + 
Sbjct: 64  TPGVIDPAYELQNLMMDSVKESLIDADVLLYVVEVGEKRMKNEEIFEKIQQTNVPTLILL 123

Query: 327 TKSDLYS--TYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K DL S     +  DH             S+     ++ LINKI  +L N     P   
Sbjct: 124 NKIDLVSQEKLDQAVDHWHALLPNAQILPISAKENFNIDLLINKIIELLPNGPMYYPEDQ 183

Query: 374 PSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAE 407
            + +   + +++ +R   +     E    ++++ E
Sbjct: 184 LTDRSERFIVNEVIREKILLHYEKEIPYAVEVVTE 218


>gi|255561072|ref|XP_002521548.1| GTP-binding protein era, putative [Ricinus communis]
 gi|223539226|gb|EEF40819.1| GTP-binding protein era, putative [Ricinus communis]
          Length = 443

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 89/215 (41%), Gaps = 32/215 (14%)

Query: 205 SHISQGKLGEII-------RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           + +   +L E+        R+GY + ++G  N GKS+L N +  + ++IVTD P TTR  
Sbjct: 125 ALLDDYELEELDYASDPNHRSGY-VAVVGKPNVGKSTLSNQMIGQKLSIVTDKPQTTRHR 183

Query: 258 LTIDLDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI-- 314
           +        Y + + DT G I++    ++   +K       NAD +L++ +     E   
Sbjct: 184 ILGICSGPDYQMVLYDTPGVIQKQMHKLDSMMMKNVRNAAINADCVLVIVDACKVPEKID 243

Query: 315 --------SFPKNIDFIFIGTKSDL------------YSTYTE-EYDHLISSFTGEGLEE 353
                   S       + +  K DL            Y  +T+ +    +S+  G G+E+
Sbjct: 244 EVLEEGVGSLKDKPPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 303

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           + + I S L       P  I S     + +++ VR
Sbjct: 304 IKDWILSKLPFGPAYYPKDIVSEHPERFFVAEIVR 338


>gi|119511690|ref|ZP_01630795.1| GTP-binding protein Era [Nodularia spumigena CCY9414]
 gi|119463675|gb|EAW44607.1| GTP-binding protein Era [Nodularia spumigena CCY9414]
          Length = 324

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 22/209 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L  + +AI + I  TTR+ L   L      +   DT GI +  
Sbjct: 35  IGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGILTTPEAQLIFVDTPGIHKPH 94

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             + +  +K     +++ D++L + + +           ++        I    K D   
Sbjct: 95  HQLGQVLVKNARNAIDSVDVVLFVVDGSVACGAGDRFIADLLVRTETPVILGLNKIDQQP 154

Query: 334 TYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +  D                 S+ TG GL EL   +   L       P  + + +  
Sbjct: 155 PNFQPIDDSYQALAETQQWPIVKFSAQTGAGLPELQQLLIEHLETGPFYYPPDLVTDQPE 214

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            + + + +R   +    E+      IA +
Sbjct: 215 RFIMGELIREQILLLTREEVPHSVAIAID 243


>gi|16079583|ref|NP_390407.1| GTP-binding protein Era [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310453|ref|ZP_03592300.1| GTP-binding protein Era [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221314776|ref|ZP_03596581.1| GTP-binding protein Era [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221319699|ref|ZP_03600993.1| GTP-binding protein Era [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323976|ref|ZP_03605270.1| GTP-binding protein Era [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|321312012|ref|YP_004204299.1| GTPase Era [Bacillus subtilis BSn5]
 gi|1168646|sp|P42182|ERA_BACSU RecName: Full=GTPase Era; AltName: Full=Bex protein
 gi|606745|gb|AAB59994.1| Bex [Bacillus subtilis]
 gi|1303826|dbj|BAA12482.1| YqfH [Bacillus subtilis]
 gi|2634961|emb|CAB14458.1| GTP-binding protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484975|dbj|BAI86050.1| GTP-binding protein Era [Bacillus subtilis subsp. natto BEST195]
 gi|320018286|gb|ADV93272.1| GTPase Era [Bacillus subtilis BSn5]
          Length = 301

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 22/198 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +   L         
Sbjct: 2   TNESFKSGF-VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIF 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISFPK----NIDFI 323
            DT GI +    +    +K     ++  DLIL +           E    K    +    
Sbjct: 61  IDTPGIHKPKHKLGDFMMKVAQNTLKEVDLILFMINAEEGYGKGDEFIIEKLQTMSTPVF 120

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            I  K D         L   Y + Y       IS+  G  +E L+ +I++ L    +  P
Sbjct: 121 LIVNKIDKIHPDQLLLLIDEYRKRYPFKEIVPISALEGNNIETLLAQIEAYLPEGPQFYP 180

Query: 371 FSIPSHKRHLYHLSQTVR 388
               +     + +S+ +R
Sbjct: 181 SDQVTDHPERFIISELIR 198


>gi|225630483|ref|YP_002727274.1| GTP-binding protein Era [Wolbachia sp. wRi]
 gi|225592464|gb|ACN95483.1| GTP-binding protein Era [Wolbachia sp. wRi]
          Length = 294

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 23/164 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G  NAGKS+L N++  K +AIVT    TTR  +          V  +D+ GI   +
Sbjct: 9   VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQVVFTDSPGIFSAE 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFPK---------NIDFIFIGTKSDL 331
             +EK  +K  +  V+++D+ LLL ++++  K I   K             I +  K+DL
Sbjct: 69  TKLEKALVKSAWSAVKDSDITLLLVDVSNYLKNIERIKTIFMRLQRTKGRCILVINKTDL 128

Query: 332 YST-------------YTEEYDHLISSFTGEGLEELINKIKSIL 362
                           Y  E   +IS+   +GL +L+N +  + 
Sbjct: 129 VKRPELKMAHEHLNLLYKFEKVFMISALKNDGLSDLMNYLSEVA 172


>gi|307264991|ref|ZP_07546552.1| small GTP-binding protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326390092|ref|ZP_08211654.1| small GTP-binding protein [Thermoanaerobacter ethanolicus JW 200]
 gi|306919976|gb|EFN50189.1| small GTP-binding protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325993957|gb|EGD52387.1| small GTP-binding protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 407

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 20/158 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  NAGKSSL NAL  ++VA+V+DI GTT D ++  +++     V I DTAG+ 
Sbjct: 10  LHIALFGRRNAGKSSLINALTNQEVALVSDIAGTTTDPVSKAMEILPIGPVVIIDTAGLD 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
           +   + E   +K+T+  +   DL +L+ +             +I   KNI  + +  K D
Sbjct: 70  DVGPLGELR-VKKTYEVLNKTDLAILVIDGTEGVTEFEEKILQIITEKNIPVVGVINKKD 128

Query: 331 LYSTYTEEYDHLI----------SSFTGEGLEELINKI 358
           L +    +               S+   EG+EEL   I
Sbjct: 129 LSNYSQLQKKEWEKRLNLKLIEVSARNKEGIEELKMMI 166


>gi|224825224|ref|ZP_03698330.1| GTP-binding protein Era [Lutiella nitroferrum 2002]
 gi|224602895|gb|EEG09072.1| GTP-binding protein Era [Lutiella nitroferrum 2002]
          Length = 296

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 85/219 (38%), Gaps = 24/219 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + V+I +    TTR  +      +       DT G +   
Sbjct: 11  VAIVGRPNVGKSTLMNHLIGQKVSITSKKAQTTRHRVNGIHTEDTAQFVFVDTPGFQTFH 70

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI----NSKKEI--SFPKNIDFIFIGTKSD---- 330
                E + R+  E + + D +L + E      + KE+    PK+   + +  K D    
Sbjct: 71  KGALNEVLNRSVKETLSDVDCVLFVIEAMRWTGADKELLPLLPKHTPVMLVINKLDKAKD 130

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     + + +      ++S+  G+ L EL++K++  L       P  + + K   
Sbjct: 131 KQALMEFIETVKADFAFADVEVVSAKHGQRLAELLDKVRPRLPESMPLYPEDMVTDKSER 190

Query: 381 YHLSQTVRYLEMASLNEK---DCGLDIIAENLRLASVSL 416
           +  ++ VR      L E+      +++    L  A   +
Sbjct: 191 FLAAEIVREKLFRYLGEELPYSMNVEVEQFELDGALRRI 229


>gi|52081076|ref|YP_079867.1| GTP-binding protein Era [Bacillus licheniformis ATCC 14580]
 gi|52786455|ref|YP_092284.1| GTP-binding protein Era [Bacillus licheniformis ATCC 14580]
 gi|319644966|ref|ZP_07999199.1| GTP-binding protein era [Bacillus sp. BT1B_CT2]
 gi|52004287|gb|AAU24229.1| GTP-binding protein [Bacillus licheniformis ATCC 14580]
 gi|52348957|gb|AAU41591.1| Era [Bacillus licheniformis ATCC 14580]
 gi|317392775|gb|EFV73569.1| GTP-binding protein era [Bacillus sp. BT1B_CT2]
          Length = 301

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +   L  +       D
Sbjct: 4   ESFKSGF-VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTDTSQTIFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPK--NIDFIFI 325
           T GI +    +    +K     ++  DLIL +           +  I   K        I
Sbjct: 63  TPGIHKPKHKLGDFMMKVAHNTLKEVDLILFMINAEEGYGKGDEFIIERLKGVKTPVFLI 122

Query: 326 GTKSD---------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L   Y   Y       IS+  G  ++ L+ +I+  L    +  P  
Sbjct: 123 VNKIDRIHPDELLVLIDEYRTRYPFQEIVPISALEGNNIDTLLKQIEDYLPEGPQFYPSD 182

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +S+ +R
Sbjct: 183 QVTDHPERFIISELIR 198


>gi|312878053|ref|ZP_07737990.1| small GTP-binding protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795170|gb|EFR11562.1| small GTP-binding protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 403

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 19/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSSL NA+  + +AIV+D+PGTT D +   +++     V + DTAG
Sbjct: 8   ERLHIAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKSMEILPLGPVVLIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISFP------KNIDFIFIGTKS 329
           I +   +  K  +++T   ++  D+ IL++ +++      +       K +  I +  K 
Sbjct: 68  IDDEGALG-KLRVEKTLEVLDKTDIAILVVSDLDDLTYEKWLVKLFEQKKVARIGVLNKI 126

Query: 330 DLYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKFKKL 369
           D    Y E+              +S    +G+++L N +  ++ +  + L
Sbjct: 127 DRDQIYKEKLLFLQSTLGMPFLPVSCAQQKGIDDLKNALTKLIPDVGEDL 176


>gi|266621740|ref|ZP_06114675.1| GTP-binding protein Era [Clostridium hathewayi DSM 13479]
 gi|288866563|gb|EFC98861.1| GTP-binding protein Era [Clostridium hathewayi DSM 13479]
          Length = 280

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 77/205 (37%), Gaps = 23/205 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L N L  + +AI +D P TTR+ +      E   +   DT 
Sbjct: 5   YKSGF-VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFLDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGT 327
           GI +  + + +  +      ++  D++L L E  +          E         I +  
Sbjct: 64  GIHKAKNKLGEYMVSVAEHTLKEVDVVLWLVEPTTFIGAGERHIAEQLQNVKTPVILVIN 123

Query: 328 KSDLYSTYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D      E  +                +S+   +  + +++ I   L    +      
Sbjct: 124 KIDTIKNQDEILEFIAAYKDVCSFAEIVPVSALKDKNTDLMLDLIYKYLPCGPQYYDEDT 183

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            + +      S+ +R   +  L+++
Sbjct: 184 VTDQPMRQIASELIREKALRLLSDE 208


>gi|51891672|ref|YP_074363.1| Era family GTP-binding protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51855361|dbj|BAD39519.1| Era family GTP-binding protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 316

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 78/214 (36%), Gaps = 39/214 (18%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G   R+G+   I+G  N GKS+L NA     +AI++D P TTR+ +    +     V   
Sbjct: 3   GAPFRSGF-CSIVGRPNVGKSTLLNAFVAAKLAIMSDKPQTTRNRILGVYNRPDAQVVFL 61

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNIDFI 323
           DT GI +    + +   K     +   D++L + + +  +         ++        I
Sbjct: 62  DTPGIHKPRHRLGEYMNKVAIGTIPEVDVVLFVVDGSVPEPGEGDRYVADVVARSGRPAI 121

Query: 324 FIGTKSDLY------------------STYTEEYD-----------HLISSFTGEGLEEL 354
            +  K D                       +E  D             +S+   + ++ L
Sbjct: 122 LVVNKMDRVKRGDWYAVMDAYKALAQPEARSENPDPGAPTIEWIDIVPVSALEHKNIDAL 181

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           ++ I   +    K  P  + + +   + +++ +R
Sbjct: 182 LDLIVQQMEEGPKYYPEDMITDQPERFVIAEFIR 215


>gi|150018074|ref|YP_001310328.1| small GTP-binding protein [Clostridium beijerinckii NCIMB 8052]
 gi|149904539|gb|ABR35372.1| small GTP-binding protein [Clostridium beijerinckii NCIMB 8052]
          Length = 412

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 20/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I + G +NAGKSS+ NAL  ++++IV+D+ GTT D +   +++       I DTAG
Sbjct: 10  ERVHIALFGMTNAGKSSIINALTNQEISIVSDVKGTTTDPVYKAIEILPIGPCMIIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISF--PKNIDFIFIGTK 328
           + +  ++ E    K+T   +   D+ L++ +       N +  I     K I  I I  K
Sbjct: 70  LDDESELGESRK-KKTIEVLSKTDVALVVVDATVGVTENDRSIIDQIKEKKIPTICIFNK 128

Query: 329 SDLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKK 368
           +D  +   EE   +           S+    G++EL  KI S++ +   K
Sbjct: 129 ADKKNIEKEELAEIEKTIGTTVVSVSALNKNGIDELKQKIISVIPDNEDK 178


>gi|308370797|ref|ZP_07422773.2| GTP-binding protein engA [Mycobacterium tuberculosis SUMu003]
 gi|308330810|gb|EFP19661.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu003]
          Length = 308

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 81/213 (38%), Gaps = 28/213 (13%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKD 243
            +  S      +  L + + + + +         G + + ++G  N GKSSL N LA   
Sbjct: 9   PHAISAMHGRGVADLLDGVLAALPEVGESASASGGPRRVALVGKPNVGKSSLLNKLAGDQ 68

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENAD 300
            ++V +  GTT D +   ++L G + +  DTAG+R         E     RT   +++A+
Sbjct: 69  RSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRRKVGQASGHEFYASVRTHAAIDSAE 128

Query: 301 LILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYSTYTEEY------------- 339
           + ++L + +            +        +    K DL      E              
Sbjct: 129 VAIVLIDASQPLTEQDLRVISMVIEAGRALVLAYNKWDLVDEDRRELLQREIDRELVQVR 188

Query: 340 ---DHLISSFTGEGLEELINKIKSILSNKFKKL 369
                 IS+ TG  + +L+  ++  L++   ++
Sbjct: 189 WAQRVNISAKTGRAVHKLVPAMEDALASWDTRI 221


>gi|291541888|emb|CBL14998.1| iron-only hydrogenase maturation protein HydF [Ruminococcus bromii
           L2-63]
          Length = 391

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 11/157 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I   G  NAGKSS+ NA+  +++++V+D  GTT D +   ++L     V I DTAG
Sbjct: 10  ERLHIGFFGRRNAGKSSVVNAVTNQNMSLVSDKKGTTTDPVEKTMELLPLGPVVIIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTK 328
             +    +    ++RT   +   D+ +L+ +         N    +   K I ++ +  K
Sbjct: 70  FDD-GGTLGTMRVERTKAVLNRVDIAVLVVDGTIGMTSVENELVSLFEEKKIPYLIVFNK 128

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            DL    T+     +S+     +E L +KI  +++ +
Sbjct: 129 CDLLDNTTDGKIF-VSAKNNTNIELLKDKIAKVVNAQ 164


>gi|153809863|ref|ZP_01962531.1| hypothetical protein RUMOBE_00244 [Ruminococcus obeum ATCC 29174]
 gi|149834041|gb|EDM89121.1| hypothetical protein RUMOBE_00244 [Ruminococcus obeum ATCC 29174]
          Length = 408

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 18/171 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I   G  NAGKSS+ NA+  +D+AIV+ + GTT D +   ++L     V + DT G
Sbjct: 10  ERVHISFFGKRNAGKSSVINAVTGQDLAIVSSVMGTTTDPVYKTMELLPLGPVMVIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTK 328
           I +  ++     +++++  +   D+ +L+ +  +   ++E+        K I ++ +  K
Sbjct: 70  IDDEGELGALR-VRKSYQVLNKTDIAILVIDSTAGKGEEELELIHRFHKKGIPYLIVYNK 128

Query: 329 SDLYSTYT--------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            DL ST             + L+S+  G  ++EL  KI S+ S    K P 
Sbjct: 129 IDLLSTEKIKDLAMSVRAGEVLVSASDGMNIQELKEKIASLKSEDTHKYPL 179


>gi|297172694|gb|ADI23661.1| GTPase [uncultured Gemmatimonadales bacterium HF4000_15H13]
          Length = 317

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 21/165 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L  + ++IVT    TT   +T  L      +   DT G+ E  
Sbjct: 22  VTLVGRPNAGKSTLLNRLIGEHLSIVTAKAQTTWQRVTGILTTGSDQLIFLDTPGLLEVH 81

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF------PKNIDFIFIGTKSDLY 332
           D+ ++  +      +  AD++LL+ +     S +E +                  K D  
Sbjct: 82  DLFQRAMLGAALQALSEADVVLLVIDCTRKPSPQETARIVHAVEEAQAPIHVALNKIDEA 141

Query: 333 STYTEEYD------------HLISSFTGEGLEELINKIKSILSNK 365
                E              H +S+  G G++EL+  ++S L   
Sbjct: 142 DEQQIEAWERWLAGHVPGALHQVSAADGSGVDELLEAVRSALPEG 186


>gi|296116360|ref|ZP_06834975.1| GTP-binding protein EngA [Gluconacetobacter hansenii ATCC 23769]
 gi|295977060|gb|EFG83823.1| GTP-binding protein EngA [Gluconacetobacter hansenii ATCC 23769]
          Length = 470

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 18/162 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           +VI G  N GKS++FN L  +  A+V D PG TRD    +  + G  +++ DTAG+ E  
Sbjct: 16  VVIAGRPNVGKSTIFNRLVGRRQALVADTPGVTRDRKESETTVRGRRIRLIDTAGLEEAA 75

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332
            D +       +   V  ADL+L   +  +               +    + +  K++  
Sbjct: 76  PDTLFGRMRASSESAVAMADLVLFCVDARAGITPADEHFAAWLRRQGRPVLVLANKAEGR 135

Query: 333 S---------TYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                     +        IS+  GEGL +L+ +I   +   
Sbjct: 136 QGAAAAMEAFSLGLGAPLGISAEHGEGLADLMGEIADRIPAG 177



 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 114/329 (34%), Gaps = 52/329 (15%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET----EMQRRLSMEGMSGE 153
            L     L  A P     R   + +  +  A+ +   + +        +   +     G 
Sbjct: 64  RLIDTAGLEEAAPDTLFGRMRASSESAVAMADLVLFCVDARAGITPADEHFAAWLRRQGR 123

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG--- 210
              +     +      + +EA   FS         S E    +  L  +I+  I  G   
Sbjct: 124 PVLVLANKAEGRQGAAAAMEA---FSLGLGAPLGISAEHGEGLADLMGEIADRIPAGPLH 180

Query: 211 ------KLGEIIRNG-------YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                 ++     +G        ++ I+G  NAGKS+L N L  ++  I    PG TRD 
Sbjct: 181 PRRAPRRVESEDEDGDVRPPGPLRLAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDS 240

Query: 258 LTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEIN---SK 311
           +++ L  +   +++ DTAG+R     D+ +EK  +  +   ++ A++++L  +      +
Sbjct: 241 VSVMLHDDEGPIQLVDTAGLRRKARIDETLEKMSVSASIEALKMAEVVILALDATLGVHE 300

Query: 312 KEISFPK-----NIDFIFIGTKSDLY------------------STYTEEYDHLISSFTG 348
           +++   +         +    K D                    S          S+ TG
Sbjct: 301 QDLQIARLIEREGRCCVLALNKWDAVEDRNVTRQAIRDRIEMSLSQMRGIPVVAFSALTG 360

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHK 377
            G+ +L+  ++       +++P    +  
Sbjct: 361 AGVNKLLPTVRRAYEVWNRRVPTGELNRW 389


>gi|20093894|ref|NP_613741.1| HflX family GTPase [Methanopyrus kandleri AV19]
 gi|19886832|gb|AAM01671.1| GTPase of the HflX family [Methanopyrus kandleri AV19]
          Length = 423

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 111/261 (42%), Gaps = 31/261 (11%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSSLFNALAKKDVAI 246
           + +   I  ++ ++       +L    R+      + + G++ AGKS+L  AL  + V  
Sbjct: 157 EMIRRKIAKIERELRRIEKDRELKRKHRHRLGFELVTLAGYTCAGKSTLMRALTDETV-Y 215

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           V     +T D  T  +DL+G+ V ++DT G  +       E  K T  E   ADL+LL+ 
Sbjct: 216 VDSKMFSTLDTKTRAVDLDGHRVLLTDTVGFVDNLPHWLVESFKSTLEETAQADLVLLVV 275

Query: 307 EINSK-KEISFP------------KNIDFIFIGTKSDLYSTYTEE-----------YDHL 342
           +++ +  EI                    +    K+DL      E           +  +
Sbjct: 276 DVSDELPEIKRKLRVCHRTLEEIGAEGPIVTALNKADLIGWEEAERRLRELEGYVSHPVV 335

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TGEGL++L  +++++LS  +K +   +P     +  +S+      +      + G+
Sbjct: 336 VSAKTGEGLDDLKAEMRTVLSRYWKNVRIELPMRNETMRVVSKLHELGNVLDERWSNDGV 395

Query: 403 DIIAENLRLASVSLGKITGCV 423
           ++    L ++  +LG + G V
Sbjct: 396 EVF---LEVSEKALGTVRGTV 413


>gi|330791039|ref|XP_003283602.1| hypothetical protein DICPUDRAFT_6420 [Dictyostelium purpureum]
 gi|325086462|gb|EGC39851.1| hypothetical protein DICPUDRAFT_6420 [Dictyostelium purpureum]
          Length = 461

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 12/125 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIR 278
            +I I+G  NAGKSSL N +  +  +IV+DIPGTT D +  +      + + + DTAGIR
Sbjct: 196 IRISIVGKPNAGKSSLLNKIIDEQRSIVSDIPGTTHDPVDCNFLWRDKHELCLVDTAGIR 255

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGT 327
                    EK  +      +E + ++ L+ +     + +++             I +  
Sbjct: 256 RRSTHKVGLEKSSVLWALKSIEKSHVVFLVIDATVGITDQDLKIASFIMENRKSCIILVN 315

Query: 328 KSDLY 332
           K DLY
Sbjct: 316 KWDLY 320



 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 20/152 (13%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE 279
           I I+G  N GKS++FN +   +  A+V +IPGTTRD    +  L G    + DT G I E
Sbjct: 3   IAIIGKPNVGKSTIFNRIIQGQRQALVEEIPGTTRDRYYGEAFLYGREFILVDTGGLIGE 62

Query: 280 TDDIVEKEGIK-----RTFLEVENADLILLLKEINS-------------KKEISFPKNID 321
             D  EK+  +     +  + +E +D IL + +  S             +K+        
Sbjct: 63  PKDEGEKDQFQQVIHSQAEIAIEESDAILFVLDYKSGITPIDKELARMLRKKKQSLNGKP 122

Query: 322 FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
                 K+D     +E ++ L    T  G  E
Sbjct: 123 IYIAVNKADNVVQRSEGFEDLKVQVTRLGFGE 154


>gi|257464226|ref|ZP_05628605.1| GTP-binding protein Era [Fusobacterium sp. D12]
 gi|317061746|ref|ZP_07926231.1| GTP-binding protein era [Fusobacterium sp. D12]
 gi|313687422|gb|EFS24257.1| GTP-binding protein era [Fusobacterium sp. D12]
          Length = 296

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 9/140 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+++G      DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLMNKLVAEKVAIVSDKAGTTRDNIKGILNVQGKQYIFIDTPGIHKPK 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
            ++ +          ++AD IL L +   +         E         + +  K D  S
Sbjct: 66  HLLGEYMTDIAIRSFKDADAILFLLDGTQEISTGDFFVWEKIKETRKPVVVLVNKIDKIS 125

Query: 334 TY-TEEYDHLISSFTGEGLE 352
               EE    I    GEGL+
Sbjct: 126 DLEIEEKKAEIVEKLGEGLK 145


>gi|260589683|ref|ZP_05855596.1| GTP-binding protein Era [Blautia hansenii DSM 20583]
 gi|331083115|ref|ZP_08332232.1| GTP-binding protein Era [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260539923|gb|EEX20492.1| GTP-binding protein Era [Blautia hansenii DSM 20583]
 gi|330405117|gb|EGG84654.1| GTP-binding protein Era [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 301

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 21/208 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + +AI +  P TTR+ +      E   +   DT GI +  
Sbjct: 10  VAIIGRPNVGKSTLMNHLIGQKIAITSRKPQTTRNKIQTVYTGEKGQIVFLDTPGIHKAK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNI--DFIFIGTKSDLYS 333
           + + +  +       ++AD+IL L E         +      KN     I +  K D   
Sbjct: 70  NKLGEYMVNVAQRTFKDADVILWLVEPTSYIGAGERHIAEQLKNCKLPVILVINKVDTVK 129

Query: 334 T-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                         Y        S+   + L+ +++ I   L            + +   
Sbjct: 130 KSEIAGFIDGYRKLYNFSDIVPASALRAQNLDTVLDCIFKYLPYGPMFYDEDTITDQPQR 189

Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAEN 408
             +++ +R   + +L+E+      +  +
Sbjct: 190 QIVAEMIREKALRTLDEEIPHGIAVTID 217


>gi|312134392|ref|YP_004001730.1| small gtp-binding protein [Caldicellulosiruptor owensensis OL]
 gi|311774443|gb|ADQ03930.1| small GTP-binding protein [Caldicellulosiruptor owensensis OL]
          Length = 403

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 19/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSSL NA+  + +AIV++ PGTT D +   +++     V + DTAG
Sbjct: 8   ERLHIAIFGKRNAGKSSLINAITNQPIAIVSETPGTTTDPVYKSMEILPLGPVVLIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADL-ILLLKEINSKK------EISFPKNIDFIFIGTKS 329
           I +  ++  K  +++T   +   D+ IL++ +I+         ++   K +  I +  K 
Sbjct: 68  IDDVGELG-KLRVEKTLEVLNKTDIAILVVSDIDDLTYEKHLVKLFNEKKVPKIGVLNKI 126

Query: 330 DLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKL 369
           D    Y E+   L           S  T +G++EL + +  ++ +  + L
Sbjct: 127 DKDPNYKEKLSFLQTSLGMPFLAVSCATLKGIDELKSSLAKLVPDVGEDL 176


>gi|303239164|ref|ZP_07325693.1| small GTP-binding protein [Acetivibrio cellulolyticus CD2]
 gi|302593209|gb|EFL62928.1| small GTP-binding protein [Acetivibrio cellulolyticus CD2]
          Length = 407

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 22/176 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  NAGKS+L NAL  +D+A+V+++PGTT D +   ++L     V I DTAG
Sbjct: 8   NRLHIAIFGRRNAGKSTLINALTGQDIAVVSNVPGTTTDPVYKTMELLPLGPVVIIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNID-----FIFIGTK 328
           I +  D+      ++T+  +   +  + + + +   ++ +I F + I       + +  K
Sbjct: 68  IDDVGDLGNLRM-EKTYDVLRKTNFAIFVVDADEGITEFDIKFIEEIKSREVAVVAVLNK 126

Query: 329 SDLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           SD   T   + D             S+ +  G++EL   I      KF +   +I 
Sbjct: 127 SDKIKTEQTKIDEYRKKLGIPICEISAKSKSGIDELKQLIAK--HAKFDESNLTIV 180


>gi|291544296|emb|CBL17405.1| iron-only hydrogenase maturation protein HydF [Ruminococcus sp.
           18P13]
          Length = 390

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 11/157 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           +   I   G  NAGKSSL NA+  + +AIV+D PGTT D ++  ++L     V + DTAG
Sbjct: 10  DRLHIAFFGKRNAGKSSLMNAVTNQPMAIVSDTPGTTTDPVSKAMELLPLGPVLMIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-ISFP-------KNIDFIFIGTK 328
           + +T ++  +  + ++   +   DL +L+       + I          ++I ++ +  K
Sbjct: 70  LDDTGELGSQR-VHKSMQVMRKTDLAILVTNGAEPLDVIELALLEQLNSRSIPYVLVRNK 128

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            DL      E    +S+ TGEG++ L   +   +  +
Sbjct: 129 CDLTDRRDGE-GVFVSARTGEGIDALKQAMIQAVPRE 164


>gi|300726753|ref|ZP_07060183.1| GTP-binding protein Era [Prevotella bryantii B14]
 gi|299775866|gb|EFI72446.1| GTP-binding protein Era [Prevotella bryantii B14]
          Length = 293

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 90/207 (43%), Gaps = 21/207 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNDDDCQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNI--DFIFIGTKSD---- 330
             +++  +  +   + +AD++L + ++    E     +   K +    + +  K D    
Sbjct: 67  YKMQEMMLAFSESALADADVLLYVTDVIESPEKNQDFLDKVKKMTIPVLLVINKIDESNQ 126

Query: 331 -LYSTYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            L     E++           IS+    G++ L+ +IK +L +          + K   +
Sbjct: 127 KLLGDIVEKWHGLLPNAEILPISAKNKFGVDMLMKRIKELLPDSPPYFDKDQLTDKPAKF 186

Query: 382 HLSQTVRY-LEMASLNEKDCGLDIIAE 407
            +S+ +R  + +    E    ++++ E
Sbjct: 187 FVSEIIREKILLYYDKEIPYSVEVVVE 213


>gi|326791737|ref|YP_004309558.1| small GTP-binding protein [Clostridium lentocellum DSM 5427]
 gi|326542501|gb|ADZ84360.1| small GTP-binding protein [Clostridium lentocellum DSM 5427]
          Length = 396

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +++A+V+   GTT D +   +++ G       DTAG
Sbjct: 10  NRLHIGLYGKRNSGKSSLINALTGQEIALVSKEAGTTTDPVYKSMEIYGIGPCVFIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-KEINSKKEISF-----PKNIDFIFIGTKSD 330
             +T  +  K  +++T    +  D+ L++  + +  +E+ +      ++  FI I  K D
Sbjct: 70  FDDTGSLG-KLRVEKTKEATQKTDIALIVFTDSDLAEELKWLQHFKAQDTPFIPIINKVD 128

Query: 331 LYSTYT----------EEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                                L+S+   EG++ +   I  +L   ++
Sbjct: 129 TLENRDSLAAQIEATCGISPILVSAKNKEGIDAIKEAIIRLLPEDYE 175


>gi|291535879|emb|CBL08991.1| iron-only hydrogenase maturation protein HydF [Roseburia
           intestinalis M50/1]
          Length = 453

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 29/223 (13%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G +N+GKSS  NA   ++V+IV D+ GTT D +   +++       I DTAG
Sbjct: 38  NRLHIGVFGKTNSGKSSFINAFTHQEVSIVADVAGTTTDPVYKPMEISPLGPCVIIDTAG 97

Query: 277 IRETDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335
             +  ++ E+  +++T L  E AD+ ++++   ++ +E +                    
Sbjct: 98  FDDETELGERR-VEKTKLAAEKADIAVIVVSGADACREDASETKD--------------- 141

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY-HLSQTVRYLEMAS 394
            +E     S    E L +L  ++K     K K  P      K  +  H  +   Y++  +
Sbjct: 142 AKEKLQQSSEKNQENLPDLTEELKWYQFLKEKNTPVLFLVGKADIDPHTDELASYIKEKT 201

Query: 395 LNEK-------DCGLDIIAENL-RLASVSLGK--ITGCVDVEQ 427
             +          G+D + E L RL   + G   ITG +  E+
Sbjct: 202 GKQALTVSAKTGAGIDAVREELARLVPENYGDRLITGDLVTEE 244


>gi|262373077|ref|ZP_06066356.1| GTP-binding protein Era [Acinetobacter junii SH205]
 gi|262313102|gb|EEY94187.1| GTP-binding protein Era [Acinetobacter junii SH205]
          Length = 341

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 78/210 (37%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +
Sbjct: 41  VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSREKSQAVFVDTPGMHKKE 100

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKN--IDFIFIGTKSDLYS 333
              + K   +     + + +L+L + +      N +  +   KN  +  I +  K D + 
Sbjct: 101 VRAINKMMNRAAHSALRDVNLVLFVVDAQKWTQNDELVLEKLKNAEMPVILVINKLDTFE 160

Query: 334 TYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E                   +S+  G  LE L + I+  L  +         + +  
Sbjct: 161 NKNEALPLIRERAKLMDFAEIVPVSALRGANLEHLRDTIEKYLPYQAPLYSLDQITDRSE 220

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M  L E +   D+ +   
Sbjct: 221 RFLASEIIREKIMRQLGE-ELPYDLTVQIE 249


>gi|153809519|ref|ZP_01962187.1| hypothetical protein BACCAC_03837 [Bacteroides caccae ATCC 43185]
 gi|149127827|gb|EDM19050.1| hypothetical protein BACCAC_03837 [Bacteroides caccae ATCC 43185]
          Length = 408

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 30/184 (16%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NAL  +D A+V+D PGTT D +   +++ G       DT G
Sbjct: 10  NRLHIALFGRRNSGKSSLINALTGQDTALVSDTPGTTTDPVAKAMEIHGIGPCLFIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS------------------FPK 318
             +  ++     I+RT+  VE  D+ +L    ++   +S                    K
Sbjct: 70  FDDEGELGRMR-IERTWKAVEKTDMAILFCGGDTSAGLSKETKEPDFTEELYWLEQLKAK 128

Query: 319 NIDFIFIGTKSDL----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
            I  I +  K+D+                +   LIS+    G+E++   I   L   F +
Sbjct: 129 GIPTILLINKTDIRKDSQALAIKVRESFGDTPVLISAKEKTGIEQIRRTILEKLPPDFGQ 188

Query: 369 LPFS 372
              +
Sbjct: 189 QSIT 192


>gi|113476532|ref|YP_722593.1| GTP-binding protein Era [Trichodesmium erythraeum IMS101]
 gi|110167580|gb|ABG52120.1| GTP-binding protein Era [Trichodesmium erythraeum IMS101]
          Length = 310

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 23/215 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+L N L  + VAI + +  TTR+ L   L  +   +   DT 
Sbjct: 16  YKSGF-VGIIGRPNVGKSTLMNQLVGQKVAITSPVAQTTRNRLRGILTTQAAQIIFVDTP 74

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIG--T 327
           GI +    + K  ++   + +++ DL+LL+ + +       +  I+    I    I    
Sbjct: 75  GIHKPQHQLGKVLVQNAKVAIQSVDLVLLIVDGSVIAGGGDRYIINLLDKIQTPVILGMN 134

Query: 328 KSDL---------YSTYTEEYDHLI-----SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL          S Y   + H       S+ TGEG+E L + +   +       P  +
Sbjct: 135 KLDLQPQDAWKIEASYYQLIHPHPWQIIKFSAVTGEGVEILQDLLIEQMETGPYYYPPDL 194

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            + +   + + + +R   +    E+      IA +
Sbjct: 195 VTDQAERFIMGELIREQILLLTREEVPHSVAIAID 229


>gi|229815234|ref|ZP_04445570.1| hypothetical protein COLINT_02280 [Collinsella intestinalis DSM
           13280]
 gi|229809244|gb|EEP45010.1| hypothetical protein COLINT_02280 [Collinsella intestinalis DSM
           13280]
          Length = 340

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 89/218 (40%), Gaps = 23/218 (10%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           DF    D+ +     ++    F    + +      + E  R+G+ + ++G  NAGKS+L 
Sbjct: 7   DFDPFADLSDDELDAMIEAGEF-PGAMDAPALCADVPEGFRSGF-VALVGRPNAGKSTLL 64

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           NA   + VAI + +  TTR  L   ++ E   + I DT GI +  D +  E  K    E+
Sbjct: 65  NACYGEKVAITSPVAQTTRRRLRAVVNREDCQLVIVDTPGIHKPKDGLGSELNKSALGEL 124

Query: 297 ENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST-------------Y 335
            + D+I  + + ++          E         + + TK+DL S               
Sbjct: 125 SDVDVIAFVIDASAPIGRGDAWVAERVAAAKAPKVLVLTKADLASPEEMLKQLEAARALV 184

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
             + + ++SS  G  +E  ++ + + L    +  P  +
Sbjct: 185 EFDDEIVVSSTEGFNVEAFVDVVANYLPEGPRWFPEGM 222


>gi|124515035|gb|EAY56546.1| GTP-binding protein (EngA) [Leptospirillum rubarum]
          Length = 466

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 92/261 (35%), Gaps = 45/261 (17%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLD-------FSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           L+  +   +  L  I +    ++D           +    F     +      ++DI + 
Sbjct: 133 LADFHRHGVAPLIGISAAHGRNVDALLDPFLDLMPDTEDAFPVDPGIRFSEASESDIQAW 192

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           + + K      +  ++ ++G  N GKS+L N L  ++  + + IPGTTRD +   +    
Sbjct: 193 LQRRK-----DDPPRVAVIGRPNVGKSTLVNRLLGEERLVTSPIPGTTRDAIDTLVTFRD 247

Query: 267 YLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINS----------KKE 313
                 DTAG+R+     +  E     RT   +  +++ ++L               ++ 
Sbjct: 248 KTYHFVDTAGLRKKGKVAEASELYAQIRTDRAILESEIAVVLLSAEDGLTDGDLRIIRQV 307

Query: 314 ISFPKNIDFIFIGTKSD-----------LYSTYTEEYD-------HLISSFTGEGLEELI 355
           I   +    I    K D            +    E Y           S+ TG  + +L 
Sbjct: 308 IDHRRG--LILAWNKWDTLKSTDHSLAPPFRDVRERYPFLSFAPMFGCSAKTGFHVSQLF 365

Query: 356 NKIKSILSNKFKKLPFSIPSH 376
             I ++    F ++  S  ++
Sbjct: 366 GHIATVRDWYFTRVTTSELNN 386



 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 18/176 (10%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +++    I ILG  N GKS+LFN L  +  AIV D PG TRD       +     ++ DT
Sbjct: 1   MMKIPPLIAILGRPNVGKSTLFNRLLSRREAIVEDRPGVTRDRHYSQGTIGRKSFRLVDT 60

Query: 275 AGIRETDDIVEKEGI-KRTFLEVENADLILLLKEIN------SKKEISFPK--NIDFIFI 325
            GI   DD    E I K+    +E AD ++ + +            I   +      +F 
Sbjct: 61  GGILFGDDHPLGESIRKQALFALEEADAVIYVMDGREGYLPVDADVIGRIRRSGKPSVFA 120

Query: 326 GTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D   T     D            S+  G  ++ L++    ++ +     P  
Sbjct: 121 VNKVDTVKTEEVLADFHRHGVAPLIGISAAHGRNVDALLDPFLDLMPDTEDAFPVD 176


>gi|260495459|ref|ZP_05815585.1| GTP-binding protein Era [Fusobacterium sp. 3_1_33]
 gi|260196996|gb|EEW94517.1| GTP-binding protein Era [Fusobacterium sp. 3_1_33]
          Length = 298

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 72/191 (37%), Gaps = 24/191 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKSDL 331
            ++ +         +++ D+IL L + +                  K    I +  K DL
Sbjct: 66  HLLGEYMTNIAVSILKDVDIILFLIDASKPIGTGDMFVMDRINENAKKKPKILLVNKVDL 125

Query: 332 YSTYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            S   +              +     S     G+ +L+  +   L    K  P  + +  
Sbjct: 126 ISDEQKKEKLKEIEEKLGKFDKIIFASGMYSFGISQLLESLDPYLEEGVKYYPDDMYTDM 185

Query: 378 RHLYHLSQTVR 388
                +++ VR
Sbjct: 186 STYRIITEIVR 196


>gi|241890023|ref|ZP_04777321.1| GTP-binding protein Era [Gemella haemolysans ATCC 10379]
 gi|241863645|gb|EER68029.1| GTP-binding protein Era [Gemella haemolysans ATCC 10379]
          Length = 302

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 23/213 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E I+ G+ + I+G  NAGKS+L N + K+ +AI++D P TTR+++          +   D
Sbjct: 4   EQIKTGF-VTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRNIINGVYTDNDSQIVFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFI 325
           T GI +    +    +K     ++ ++++ L+   + K          I     +    +
Sbjct: 63  TPGIHKPKHRLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFLL 122

Query: 326 GTKSDLYST---------YTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL S          Y + YD      IS+     ++ L+N  K  L   FK  P  
Sbjct: 123 INKIDLISPEQLIQIIEFYKDLYDFVEIVPISALKSINVDNLLNTTKKYLQPSFKMYPDD 182

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
           + +     + +S+ +R  ++  L E++    I 
Sbjct: 183 VITDSPEYFVISEFIRE-KVLQLTEQEIPHSIA 214


>gi|170781664|ref|YP_001709996.1| GTP-binding protein EngA [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156232|emb|CAQ01374.1| putative GTP binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 502

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 19/160 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D PG TRD ++   +  G    + DT G     
Sbjct: 70  LAVVGRPNVGKSALINRILGRREAVVEDTPGVTRDRVSYKAEYAGRWFTLVDTGGWEPDA 129

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFI--GTKSD--- 330
             +      +  + ++ AD +L + + N       +  +   +      I    K D   
Sbjct: 130 KGINASVAMQAEIAMDLADAVLFVVDANVGATSTDEHVVRLLRKTKKTVILAANKVDDAR 189

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  L+S    E  H +S+  G G+ +L++ +   L 
Sbjct: 190 QEPNAASLWSLGLGE-PHPVSALHGRGVADLLDLVLKTLP 228



 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 27/176 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ILG  N GKSSL N  A ++  +V ++ GTTRD +   +++   + +  DTAGIR  
Sbjct: 243 RVAILGRPNVGKSSLLNKAAGEERVVVNELAGTTRDPVDEQVEIADKVWRFVDTAGIRRR 302

Query: 281 DDIVE---KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
             + +        RT   +E A++ +++ +++           E+        +    K 
Sbjct: 303 MHLAQGADFYASLRTSAALEKAEVAVVMIDVSEVISEQDIRIIELVLESGRALVLAFNKW 362

Query: 330 DLYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           DL       Y                   IS+ TG  +E+L+  +++ L +   ++
Sbjct: 363 DLLDDERRRYLEREIETDLAHVSWAPRVNISARTGRHMEKLVPALETALESWDTRI 418


>gi|253580801|ref|ZP_04858064.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847871|gb|EES75838.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 302

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 85/218 (38%), Gaps = 22/218 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + I+G  N GKS+L N L  + +AI +  P TTR+ +      +   +  
Sbjct: 1   MNENFKSGF-VAIIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTCDEGQIVF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFI 323
            DT GI +  + + +  ++     ++  D I+ L E ++          E      +  I
Sbjct: 60  LDTPGIHKAKNKLGEYMVQVAERTLKEVDAIMWLVEPSTFIGAGERHIAEQLQGIGVPVI 119

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            I  K D            TY +  D       S+  G+  +++I  I   L        
Sbjct: 120 LIINKIDTVSKEEILPAIDTYRKVCDFAEIIPCSALRGQNTQDIIGCILKYLPYGPMFYD 179

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
               + +     +++ +R   + +L+ +      +A +
Sbjct: 180 EDTVTDQPQRQIVAEIIREKALHALDAEIPHGIAVAID 217


>gi|296535949|ref|ZP_06898098.1| GTP-binding protein Era [Roseomonas cervicalis ATCC 49957]
 gi|296263722|gb|EFH10198.1| GTP-binding protein Era [Roseomonas cervicalis ATCC 49957]
          Length = 319

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N LA   V+IV+  P TTR  +   +  E   + ++DT GI    
Sbjct: 30  VAVVGAPNAGKSTLVNRLAGAKVSIVSPKPQTTRFRIRAVVMQERTQIVLTDTPGIFSPR 89

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSDLYS 333
             +++  +   +   ++ADL LL+ +  +      +  IS  K   +    +  KSDL  
Sbjct: 90  RRLDRAMVAAAWEGAQDADLALLIVDSRAGMTEAVESIISVLKRSRVPIWLVLNKSDLID 149

Query: 334 T-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           T              + E   +IS+  G+GL+ ++  +   L       P    S     
Sbjct: 150 TKKLLPLTASLNEQLSFEETFMISAEKGDGLDRMMAALGRRLPEGPWLFPEDELSDLPDR 209

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++ VR   +   +++
Sbjct: 210 MLAAEIVREQILRQTHQE 227


>gi|288924557|ref|ZP_06418494.1| GTP-binding protein Era [Prevotella buccae D17]
 gi|288338344|gb|EFC76693.1| GTP-binding protein Era [Prevotella buccae D17]
          Length = 293

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 20/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ E   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTEDTQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKN-----IDFIFIGTKSDL--- 331
             +++  +  +   + +AD++L + ++  N  K + F        I  + +  K D    
Sbjct: 67  YKMQEMMLAFSESALADADVLLYVTDVVENPGKNVDFLDKVKKMSIPVLLLINKIDESDQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                     +S         IS+    G++ L+ +IK +L        
Sbjct: 127 KKLGDLVEKWHSLLPNAEILPISAKNKFGVDMLMRRIKELLPESPAYFD 175


>gi|242242840|ref|ZP_04797285.1| GTP-binding protein Era [Staphylococcus epidermidis W23144]
 gi|242233703|gb|EES36015.1| GTP-binding protein Era [Staphylococcus epidermidis W23144]
          Length = 208

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   DT GI +  
Sbjct: 9   VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-- 331
             +    ++     +   D I+ +  +N           E+          +  K DL  
Sbjct: 69  HKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKNVKTPIFLVLNKIDLVH 128

Query: 332 ----------YSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     Y +Y +  D   IS+  G  ++  I+ +KS L    K  P +  S     
Sbjct: 129 PDTLMPKIEQYQSYMDFTDIIPISALEGMNVDHFIDVLKSFLPEGPKYYPDNQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 189 FVVSEIIR 196


>gi|251796247|ref|YP_003010978.1| GTP-binding protein Era [Paenibacillus sp. JDR-2]
 gi|247543873|gb|ACT00892.1| GTP-binding protein Era [Paenibacillus sp. JDR-2]
          Length = 299

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 81/193 (41%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N L  + +AI++D P TTR+ +      +   +   DT G
Sbjct: 7   RSGF-VAIIGRPNVGKSTLMNHLIGQKIAIMSDKPQTTRNKIHGVYTTDTSQIVFLDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNID--FIFIGTK 328
           I +    +    +K     ++  + +L L ++        +  I   K +D     +  K
Sbjct: 66  IHKPQSKLGDYMMKTAEGALKEVEAVLFLIDVADGLGGGDRFIIEQLKKVDTPVFLVMNK 125

Query: 329 SD------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D      L ST T+  D          S+  G  +E L+ +++  L    +  P    +
Sbjct: 126 IDKVQPEQLLSTITQYKDLYPFAEIVPISALQGNNVETLLAQLQKYLPEGPQYYPADQVT 185

Query: 376 HKRHLYHLSQTVR 388
                + +S+ +R
Sbjct: 186 DHPEQFVVSELIR 198


>gi|167769533|ref|ZP_02441586.1| hypothetical protein ANACOL_00867 [Anaerotruncus colihominis DSM
           17241]
 gi|167668501|gb|EDS12631.1| hypothetical protein ANACOL_00867 [Anaerotruncus colihominis DSM
           17241]
          Length = 396

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 77/172 (44%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  N+GKSSL NA+  ++ A+ +DI GTT D +   +++ G     + DTAG
Sbjct: 10  NRLHIGIFGKRNSGKSSLINAITGQNTAVTSDIAGTTTDPVYKAMEIHGIGPCMLIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK-EINSKKEISF-----PKNIDFIFIGTKSD 330
             +   +     I++T   +   D+ ++L  + +  +E  +      +    + +  K+D
Sbjct: 70  FDDEGSLGALR-IEKTRDALAKTDVAIMLFCDADLTQEQEWIGALRAQKTPVVAVVNKAD 128

Query: 331 LYSTYTEE----------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +     E           +  + S+  G G++++I  +   +   ++K   +
Sbjct: 129 ILPNVPEIAEAVHTAFGLFPVVASAKDGAGVKDVIEAVIRQMPEDYEKKSVT 180


>gi|288801361|ref|ZP_06406815.1| GTP-binding protein Era [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331744|gb|EFC70228.1| GTP-binding protein Era [Prevotella sp. oral taxon 299 str. F0039]
          Length = 293

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 87/187 (46%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ E   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNLLVGEKISIATFKAQTTRHRIMGIVNTEDMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPK-----NIDFIFIGTKSDL--- 331
             +++  +  +   + +AD++L + ++  N +K I F +     +I  I +  K D+   
Sbjct: 67  YRLQESMLAFSESALTDADILLYVTDVIENPEKNIEFLEKVQHLDIPIILLINKIDMSDQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                     +S   +     +S+    G++ L+N+IK +L +          + K   +
Sbjct: 127 KTLGSLVEKWHSLLPKAEILPLSALNKFGVDILLNRIKDLLPDSPPFFDKDQLTDKPARF 186

Query: 382 HLSQTVR 388
            +S+ +R
Sbjct: 187 FVSEIIR 193


>gi|49475305|ref|YP_033346.1| GTP-binding protein Era [Bartonella henselae str. Houston-1]
 gi|49238111|emb|CAF27318.1| GTP-binding protein era homolog [Bartonella henselae str.
           Houston-1]
          Length = 300

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 86/203 (42%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +V++G  NAGKS+L N L    V+IVT    TTR ++   +  +   + + DT G
Sbjct: 8   RSGF-VVLIGMPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLIRGIVIHDNAQIVLIDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           +      +E+  +   +   +NAD++L+L +  +       K          D I +  K
Sbjct: 67  VFSPHKRLERAMVSAAWGGAKNADVLLVLIDAQNGLSDEVCKMLDIVANIKQDKILVLNK 126

Query: 329 SD------LYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D      L +      +H       +IS+  G G ++L++ + +++       P    S
Sbjct: 127 IDTVAKSSLLALTAGINEHVKFLQTFMISALKGSGCKDLLHALSTMMQEGPWYYPEDQIS 186

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+++
Sbjct: 187 DMPMRQLAAEITREKLFLRLHDE 209


>gi|308380152|ref|ZP_07669128.1| putative small GTP-binding protein domain protein [Mycobacterium
           tuberculosis SUMu011]
 gi|308362467|gb|EFP51318.1| putative small GTP-binding protein domain protein [Mycobacterium
           tuberculosis SUMu011]
          Length = 208

 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 19/148 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V DIPG TRD +  D    G    + DT G     
Sbjct: 22  VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 81

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330
             +++   ++  + +  AD ++L+ +          +   I             K D   
Sbjct: 82  KGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSEK 141

Query: 331 -------LYSTYTEEYDHLISSFTGEGL 351
                  L+S    E  H IS+  G G 
Sbjct: 142 GESDAAALWSLGLGE-PHAISAMHGRGW 168


>gi|83593186|ref|YP_426938.1| GTP-binding protein Era [Rhodospirillum rubrum ATCC 11170]
 gi|83576100|gb|ABC22651.1| GTP-binding protein Era [Rhodospirillum rubrum ATCC 11170]
          Length = 309

 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 76/203 (37%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N L    V IV+    TTR  +     +    V   DT G
Sbjct: 16  RCGF-VAVIGAPNAGKSTLVNRLVGSKVTIVSPKVQTTRSRVRGIAMVGEAQVVFVDTPG 74

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTK 328
           I +     ++  +   +     ADL+LL+ +    I ++ E    K        +    K
Sbjct: 75  IFQPRKRFDRAMVAAAWEGALEADLVLLVIDAHKGITAEVEEILTKLKATGRRALLALNK 134

Query: 329 SD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D             L +    E   +IS+ TG G ++++  +   +       P    S
Sbjct: 135 VDALERSRLLEMASRLDAALPFEKVFMISALTGSGCDDVLAWLAERVPAGPWMFPEDEVS 194

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+E+
Sbjct: 195 DLPQRLLAAEITREKVFLQLHEE 217


>gi|86158078|ref|YP_464863.1| small GTP-binding protein Era [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774589|gb|ABC81426.1| small GTP-binding protein Era [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 310

 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 84/218 (38%), Gaps = 31/218 (14%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            K     R G+ + I+G  N GKS+L N +  + VAIV+  P TTR  +    ++ G  V
Sbjct: 3   SKKKTPFRAGF-VAIVGRPNVGKSTLLNRVLGEHVAIVSPRPQTTRTRILGVHNVPGAQV 61

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---------------SKKEI 314
              DT G+ +    + +  ++     +   D +L+L E                 + +E+
Sbjct: 62  AFFDTPGLHKAKGALNRRMVETALSTLSEVDAVLMLIEAGTGPEGRVEVGESTRWAIEEV 121

Query: 315 SFPKNIDFIFIGTKSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSI 361
              +    + +  K D         +   Y   +D       S+ TGE ++ L+  +  +
Sbjct: 122 RRARKPAILGV-NKMDRAPRATLLPVIDAYRGLHDWADIVPFSALTGENVDTLVQALVRL 180

Query: 362 LSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           L      L P  + + +      ++ VR   M    ++
Sbjct: 181 LPESEAPLFPPDVLTDQAERALAAEYVREQVMLQTRQE 218


>gi|313678251|ref|YP_004055991.1| GTP-binding protein Era [Mycoplasma bovis PG45]
 gi|312950737|gb|ADR25332.1| GTP-binding protein Era [Mycoplasma bovis PG45]
          Length = 290

 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 84/226 (37%), Gaps = 36/226 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSL N + K D+AIV+++P TTRD +        Y     DT GI +  
Sbjct: 6   ISILGRPNVGKSSLLNKIIKYDLAIVSNVPQTTRDQIMGVYTENDYQFVFVDTPGIHKPL 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT---------KSDL- 331
           +++ +   K  F  + + D IL L  +N  +EI     +    I           K DL 
Sbjct: 66  NLLGESLNKEAFSSINDIDCILFLTPVN--EEIKSGDKLILERIANSKNKIAVISKIDLA 123

Query: 332 ------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                          +  +    +S+   + ++ LI  +K               + K  
Sbjct: 124 KSPDDISKKIKSLEEFNFQKIISVSNKNDKSIDSLIEILKEYSYEAPPFYDEDYITDKSM 183

Query: 380 LYHLSQTVRYLEMASLNEKDCGL---------DIIAENLRLASVSL 416
            +       Y+  +++N     L         D I E  R+   ++
Sbjct: 184 RFM---AKEYIRESAINLLTDELPHSIAVEVQDFIEEEDRITINAI 226


>gi|319790169|ref|YP_004151802.1| GTP-binding protein Era [Thermovibrio ammonificans HB-1]
 gi|317114671|gb|ADU97161.1| GTP-binding protein Era [Thermovibrio ammonificans HB-1]
          Length = 305

 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 7/151 (4%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +     R+GY + ILG  N GKS+L N+L    VAIVTD P TTR  +     L+   + 
Sbjct: 2   EENRKFRSGY-VAILGRPNVGKSTLLNSLLGTKVAIVTDKPQTTRHRIVGVKHLKDAQIV 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
             DT GI +    + +   +  F  V +AD+IL L +       +  K      I  K  
Sbjct: 61  FLDTPGIHKEKFELNRYMNEIAFSVVPDADIILFLIDARQGLTEADRK------ILQKIG 114

Query: 331 LYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
                  +   +I+   G   EEL+  I+ I
Sbjct: 115 EEKRKDTKVIVVINKIDGVNKEELLPLIEEI 145


>gi|124805918|ref|XP_001350575.1| GTP binding protein, putative [Plasmodium falciparum 3D7]
 gi|23496699|gb|AAN36255.1| GTP binding protein, putative [Plasmodium falciparum 3D7]
          Length = 874

 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 80/193 (41%), Gaps = 23/193 (11%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI-----IRNGYKIVIL 225
           F +A   +S         S    N +  + ++   HI + K+ E       +N   I  +
Sbjct: 519 FYKAQEFWSLGFGNPFPCSGIHGNGLSEILDECIKHIDKIKINEEHDDINEQNTINISFI 578

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRETDD- 282
           G  N GKSS+ N +   +  IV+ + GTT D + + + L+    + ++ DTAGI++    
Sbjct: 579 GKPNTGKSSILNKILNCNRFIVSPLAGTTVDSIDVLVKLKQSDRIYRLIDTAGIQKRKKN 638

Query: 283 -------IVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----NIDFIFIGT 327
                    E     RT   ++ +D+ +L+ +     S ++I+  +     N   I    
Sbjct: 639 VPFNNKTKYEYLLYNRTEKAIKRSDVCILVIDSFNGISTQDINIARKIVQENKSCIICCN 698

Query: 328 KSDLYSTYTEEYD 340
           K DL     + ++
Sbjct: 699 KWDLIYNKNDIFN 711



 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK--KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
            IIRN   I I+G  N GKS++FN L +  +D +IV D+  +TRD L  +++ EGY  ++
Sbjct: 303 NIIRNLPLISIIGRPNVGKSTIFNRLTRKYQDGSIVLDV-SSTRDKLYGEVEWEGYKFEL 361

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331
            DT G+    +   KE   +  + ++ + +++ + +     +   P++I+      K  L
Sbjct: 362 VDTGGLVFEQEKFSKEIKDQILMALKESSVVIFVVDGIHGVD---PRDIEICRFLRKYIL 418

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                 +Y +      G     +   IK + +N  K+        +R
Sbjct: 419 LKHPQGKYINKKEQQMGNSNTHVNTNIKELYNNNNKEEDDVEDDVER 465


>gi|300113379|ref|YP_003759954.1| GTP-binding protein Era [Nitrosococcus watsonii C-113]
 gi|299539316|gb|ADJ27633.1| GTP-binding protein Era [Nitrosococcus watsonii C-113]
          Length = 307

 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 79/206 (38%), Gaps = 23/206 (11%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
             ++Q    E IR GY I I+G  N GKSSL N +  + ++I +  P TTR  +     L
Sbjct: 3   EMLTQEGTQESIRCGY-IAIIGRPNVGKSSLLNRILDQKISITSRRPQTTRHRILGIKTL 61

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLE-VENADLILLLKEI-----NSKKEISFPK 318
            G      DT G ++ +  +    + R     +E  DLIL + E      + +  +   +
Sbjct: 62  PGIQAIYVDTPGFQDKERRLMNRYLNRAIDSTLEEVDLILFVIEAFQFSKDDEWILQRLR 121

Query: 319 NI--DFIFIGTKSD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                 + +  K D              L           +S++ G+ +  L +K+  +L
Sbjct: 122 RCAAPIVLVLNKVDRIIDKKSLLPVIATLSKKIEFAAIIPVSAWKGDNVAVLESKVAELL 181

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVR 388
                  P    + +   +  ++ +R
Sbjct: 182 PAGPMAYPEDQVTDRSERFLAAELIR 207


>gi|224097032|ref|XP_002310817.1| predicted protein [Populus trichocarpa]
 gi|222853720|gb|EEE91267.1| predicted protein [Populus trichocarpa]
          Length = 414

 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 82/211 (38%), Gaps = 25/211 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           +I             R+GY + ++G  N GKS+L N +  + ++IVTD P TTR  +   
Sbjct: 100 EIEELAFHDSSNSNHRSGY-VAVVGKPNVGKSTLSNQMIGQKLSIVTDKPQTTRHRILGI 158

Query: 262 LDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEI-NSKKEIS---- 315
                Y + + DT G+ E     ++   +K       NAD +L++ +   + ++I     
Sbjct: 159 CSAPDYQMILYDTPGVIEKKMHKLDSMMMKNVRSAAINADCVLVIVDACRAPEKIDEMLE 218

Query: 316 -----FPKNIDFIFIGTKSDLYSTYTEEYDHLI-------------SSFTGEGLEELINK 357
                   N+  + +  K DL                         S+  G+G+E++   
Sbjct: 219 EGVGNLKDNVPTLLVLNKKDLIKPGEIAKKLEWYEKFTGVDEVIPVSAKFGQGVEDIKEW 278

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           I S L       P  I S     + +++ VR
Sbjct: 279 ILSKLPMGPAYYPKDIVSEHPERFFVAEIVR 309


>gi|153954948|ref|YP_001395713.1| HydF [Clostridium kluyveri DSM 555]
 gi|219855393|ref|YP_002472515.1| hypothetical protein CKR_2050 [Clostridium kluyveri NBRC 12016]
 gi|146347806|gb|EDK34342.1| HydF [Clostridium kluyveri DSM 555]
 gi|219569117|dbj|BAH07101.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 413

 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 22/169 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  NAGKSS+ NA+  +D+AIV+ + GTT D +   +++       I DTAG+ 
Sbjct: 12  VHITLFGRRNAGKSSIINAITGQDIAIVSSVKGTTTDPVYKSIEILPIGPCVIIDTAGLD 71

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKS 329
           ++  + E    K+T   +   D+ L++ +              EI   K I F+ I  K 
Sbjct: 72  DSGQLGELRK-KKTLEVLNKTDISLVVIDSTVGITEYDRYIIDEIK-SKKIPFMGILNKW 129

Query: 330 DL-------YSTYTEEYDHL---ISSFTGEGLEELINKIKSILSNKFKK 368
           D+            EE D     +S+ TG+G++EL N+I  IL  +  K
Sbjct: 130 DISNIDEKDIKNIKEELDIPLIAVSAVTGKGIKELKNQIAGILPKEEDK 178


>gi|313884139|ref|ZP_07817905.1| ribosome biogenesis GTPase Era [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620586|gb|EFR32009.1| ribosome biogenesis GTPase Era [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 301

 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  + +AI++D   TTR+ +          V   DT GI +  
Sbjct: 11  VALIGRPNVGKSTLLNKVVGQKIAIMSDKAQTTRNRIQGVYTDADSQVVFIDTPGIHKPK 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKSDLYS 333
             +    +K  +  ++ AD + ++           +  I   KN  +    +  K DL S
Sbjct: 71  HALGNFMLKTAYSALQGADAVCVVVNAAEKIGPGDRLVIERAKNVQVPLFLLINKIDLVS 130

Query: 334 ---------TYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    +Y +  D      IS+  G  + EL+  +K +L    +  P          
Sbjct: 131 PEQVLQAIESYKDLADFAQVFPISALEGNNVPELVEGLKEVLPQGPQYYPADQVMDHPEY 190

Query: 381 YHLSQTVR 388
           + +++ +R
Sbjct: 191 FVVAEFIR 198


>gi|225548173|ref|ZP_03769458.1| hypothetical protein RUMHYD_00152 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040612|gb|EEG50858.1| hypothetical protein RUMHYD_00152 [Blautia hydrogenotrophica DSM
           10507]
          Length = 301

 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 82/218 (37%), Gaps = 22/218 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + ++G  N GKS+L N L  + +AI +  P TTR+ +          V  
Sbjct: 1   MNENYKSGF-VALIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTSPEGQVVF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFI 323
            DT GI +  + + +  ++     ++  D+IL L E  +          +     ++  I
Sbjct: 60  LDTPGIHKAKNKLGEYMVQVAERTLKEVDVILWLVEPTTFVGAGERRIAQQLQELHLPVI 119

Query: 324 FIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            I  K D                 Y  +    IS+       +++N I   L    +   
Sbjct: 120 LIINKVDTVEKGEILQAIDVYRRLYEFDEIIPISALRNRNTGDIMNCIFKYLPYGPQYYD 179

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
               + +      ++ +R   + +L+ +      +A +
Sbjct: 180 EDTVTDQPVRQIAAEIIREKSLHALDAEIPHGIAVAID 217


>gi|110639447|ref|YP_679656.1| GTP-binding protein Era [Cytophaga hutchinsonii ATCC 33406]
 gi|110282128|gb|ABG60314.1| GTP-binding protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 298

 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 20/161 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L N L  + ++I+T    TTR  +   ++   + +  SDT G+ E  
Sbjct: 12  VSIIGRPNAGKSTLMNCLVGERLSIITPKAQTTRHRVMGIINDPEFQIVYSDTPGVIEPK 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------DFIFIGTKSDLYSTY 335
             ++K  ++     +E+AD+IL + ++   ++ +             + +  K DL    
Sbjct: 72  YELQKSMMRFVDFSLEDADMILWVLDVKDPEDHALVLQRLNNVEVPVLLVLNKIDLS--- 128

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                      T E ++ L+ K K+        L  S   +
Sbjct: 129 -----------TQEEIDALVEKWKAEFPKADSILAVSALKN 158


>gi|320159556|ref|YP_004172780.1| GTP-binding protein era [Anaerolinea thermophila UNI-1]
 gi|319993409|dbj|BAJ62180.1| GTP-binding protein era homolog [Anaerolinea thermophila UNI-1]
          Length = 308

 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 73/203 (35%), Gaps = 27/203 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N    + +A V+  P TTR      L L    +   DT GI +  
Sbjct: 14  VAVVGRPNVGKSTLMNRFLGQKIAAVSPRPQTTRRRQLGILTLPQAQMVFVDTPGIHKPV 73

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTKS 329
             + +   +     + +AD++L L + + K             E       + +    K 
Sbjct: 74  HKLGEYMNQVALDALRDADVVLWLVDASVKPTDEDRLCAQRILEALGQNPANVLLALNKM 133

Query: 330 DLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           D                  +  +   IS+ +G G ++L+++I   L            + 
Sbjct: 134 DQVPEDQRAGRLKGYQDLLSSAWVVWISATSGAGTQDLLDEILRRLPEGPPYYEEEQITD 193

Query: 377 KRHLYHLSQTVRYLEMASLNEKD 399
                  +  +R  E A ++ KD
Sbjct: 194 LYEREIAADLIR--EAALIHLKD 214


>gi|268611990|ref|ZP_06145717.1| GTP-binding protein [Ruminococcus flavefaciens FD-1]
          Length = 297

 Score = 92.2 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 81/199 (40%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G +NAGKSSL NA+  + +A V+  P TTR  +T   +++   +   DT G+ +  
Sbjct: 7   VTIAGRTNAGKSSLLNAIVGEKIASVSSKPQTTRTRITGIRNIDDVQLVFFDTPGLHKPV 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPK-----NIDFIFIGTKSDLYS 333
           + + +  +      V + D ++ + +   K   +E+   K      +  I +  K DL  
Sbjct: 67  NKLSEHMLNTVRESVSDIDAVVFVMDCTKKINQQELDLLKSMNSSKMPVILVLNKIDLLK 126

Query: 334 TYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E                   +S     G++ +I +I ++        P  + + +  
Sbjct: 127 NKDELAPVIADLTSKINFRAVIPVSVTENSGIDIVIQEIINLSEESVHYFPDDMITDQPE 186

Query: 380 LYHLSQTVRYLEMASLNEK 398
               ++ +R   +  LN++
Sbjct: 187 KVLAAEMIREKLLMLLNDE 205


>gi|15894928|ref|NP_348277.1| GTPase [Clostridium acetobutylicum ATCC 824]
 gi|15024610|gb|AAK79617.1|AE007674_6 Predicted GTPase with uncharacterized domain, ortholog of
           T.maritima (4980952) [Clostridium acetobutylicum ATCC
           824]
 gi|325509065|gb|ADZ20701.1| GTPase with uncharacterized domain [Clostridium acetobutylicum EA
           2018]
          Length = 411

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 21/177 (11%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           + ++    GE +     I + G +N GKSS+ NAL  +++A+V+++ GTT D +   ++L
Sbjct: 2   NELNSTPKGERL----HIALFGKTNVGKSSVINALTSQEIALVSNVKGTTTDPVYKAMEL 57

Query: 265 EGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EIS 315
                V + DTAG+ +  D+ E     +T   +   D+ +L+ ++ S           + 
Sbjct: 58  LPLGPVMLIDTAGLDDISDLGELR-RGKTLEVLSKTDVAILVFDVESGITEYDKNIYSLL 116

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNK 365
             K I  I +  K D      E+Y          IS+   +G+  L +++  +    
Sbjct: 117 LEKKIPLIGVLNKIDKKDYKLEDYTSQFKIPIVPISALNNKGINNLKDELIRLAPEN 173


>gi|156743087|ref|YP_001433216.1| small GTP-binding protein [Roseiflexus castenholzii DSM 13941]
 gi|156234415|gb|ABU59198.1| small GTP-binding protein [Roseiflexus castenholzii DSM 13941]
          Length = 454

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 92/255 (36%), Gaps = 33/255 (12%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +V        +  +     ++  H    +          + I+G++NAGKS+L NAL+  
Sbjct: 188 EVDRRLIARRIQWLEQQIEEVHRHREVYRERRRQSGIPVVAIVGYTNAGKSTLLNALSGA 247

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V    D    T D  T  + L  G  + ++DT G  +          + T  E+  AD+
Sbjct: 248 NV-RAEDRLFATLDPTTRQVTLPGGQQILLTDTVGFIQKLPTHLVAAFRATLEEIREADV 306

Query: 302 ILLLKEINSKKEIS------------FPKNIDFIFIGTKSDLYSTYTE------------ 337
           +L + +I                     ++   + +  K DL     E            
Sbjct: 307 VLHVLDITHPNAAQQTQTVLDTLRDLQVEDRPTLTVLNKVDLMVGINEAEVGSIAETLGM 366

Query: 338 -EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV------RYL 390
            +    +S+  G GL+ L+ +I+  LS +   L   IP  +  L  L  T       RY 
Sbjct: 367 PDDYVAVSARKGWGLDTLLRRIEQTLSERMMPLTALIPYRRNDLVSLWHTRGVIDEERYE 426

Query: 391 EMASLNEKDCGLDII 405
              +L      +D++
Sbjct: 427 AEGTLIAGRLPVDLL 441


>gi|68067805|ref|XP_675836.1| GTP-binding protein [Plasmodium berghei strain ANKA]
 gi|56495245|emb|CAI00551.1| GTP-binding protein, putative [Plasmodium berghei]
          Length = 642

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 85/213 (39%), Gaps = 17/213 (7%)

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
           A  D  ++ D+ +   +   ++    K ++  +  +    +IIRN   + I+G  N GKS
Sbjct: 20  AGTDLDKKYDINDQGKEHRNSESE--KEEMGKN-KKYNDLKIIRNLPLVSIIGRPNVGKS 76

Query: 234 SLFNALAK--KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           ++FN L +  ++ +IV D P +TRD      + +GY  ++ DT G+   D+   KE   +
Sbjct: 77  TIFNRLTRKFQEGSIVLDKP-STRDKFYGKSEWDGYRFEVVDTGGLIFEDEKFSKEIRDQ 135

Query: 292 TFLEVENADLILLLKEINS-----KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
             L +E + ++L + +  +       EI             K     +  +EY+      
Sbjct: 136 ILLALEESSVVLFVVDGIAGVHPIDLEICRFLRKFIKKKYNKIISKQSKNDEYN------ 189

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                E L    K    N       ++  +   
Sbjct: 190 NESKRELLKCAQKKTYCNNIGSNNENVVDNTLQ 222



 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 25/194 (12%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR-----NGYKIVIL 225
           +I+A   +    +     S    N +  + ++   +I + K+ E+       N   I  +
Sbjct: 279 YIKAQNFWELGFETPFPCSGIHGNGLSEILDECIKYIKKVKINELEEEEDEENTINISFI 338

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL--DLEGYLVKISDTAGIRETDD- 282
           G  N GKSS+ N +   +  IV+ I GTT D + + +    +  + ++ DTAGI++    
Sbjct: 339 GKPNTGKSSILNKILNCNRFIVSPIAGTTIDSIDVLVKGKNDKRMYRLIDTAGIQKRKKN 398

Query: 283 -------IVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIG 326
                    E     RT   ++ +D+ +L+          +IN  ++I   +N   I   
Sbjct: 399 VPFNEKTKFEYLLFNRTEKAIKRSDVCVLVIDSFNGISSHDINIARKI-LEENKSCIICC 457

Query: 327 TKSDLYSTYTEEYD 340
            K DL     + ++
Sbjct: 458 NKWDLIYNKNDIFN 471


>gi|332297312|ref|YP_004439234.1| small GTP-binding protein [Treponema brennaborense DSM 12168]
 gi|332180415|gb|AEE16103.1| small GTP-binding protein [Treponema brennaborense DSM 12168]
          Length = 465

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 15/135 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           I     + I G  N+GKS+L NA+  ++ A+ + + GTT D +   ++L G   V   DT
Sbjct: 8   ISERLHVGIFGRMNSGKSTLLNAITGQNAALTSPVKGTTTDPVYKPMELHGVGPVVFIDT 67

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPK-----NID 321
           AG  +T ++ EK  I +T L  E  D+ LL+ E  +        + E+ + +        
Sbjct: 68  AGFDDTGELGEKR-IAQTLLAAEKTDVALLVWEPGTLLTGQPLPEPELRWLRRLRDAGKK 126

Query: 322 FIFIGTKSDLYSTYT 336
            I I  K+D  S  T
Sbjct: 127 CILILNKTDTISART 141


>gi|158521130|ref|YP_001529000.1| GTP-binding protein Era [Desulfococcus oleovorans Hxd3]
 gi|158509956|gb|ABW66923.1| GTP-binding protein Era [Desulfococcus oleovorans Hxd3]
          Length = 303

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I I G  NAGKS+L N LA + ++I +D P TTR+ +   ++ +   V   DT G
Sbjct: 12  RSGF-IAICGPPNAGKSTLLNLLAGEKISITSDKPQTTRNRILGVVNRKNAQVVFVDTPG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFI--GTK 328
           I      +    +      + + D+ILL+ ++   ++      I   K+ +   +    K
Sbjct: 71  IFRPKGKLNTAIVGTAVSALADVDVILLVIDVVKPRKDAEHLTIEHLKHHNKPVVLALNK 130

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D                 Y  E    IS+      E+L+ +++++L       P  + +
Sbjct: 131 IDRIKKHKLLEMIDSWQRLYAFERIVPISALESIQTEDLMAELETLLPEGGPLFPEEMLT 190

Query: 376 HKRHLYHLSQTVR 388
                +  ++ +R
Sbjct: 191 DAPERFLAAEMIR 203


>gi|302385324|ref|YP_003821146.1| GTP-binding protein Era [Clostridium saccharolyticum WM1]
 gi|302195952|gb|ADL03523.1| GTP-binding protein Era [Clostridium saccharolyticum WM1]
          Length = 301

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 78/205 (38%), Gaps = 23/205 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L N L  + +AI +D P TTR+ +      E   +   DT 
Sbjct: 5   YKSGF-VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFLDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKNI---DFIFIGT 327
           GI +  + + +  +      ++  D++L L E  +     ++ I+   N      I    
Sbjct: 64  GIHKAKNKLGEYMVSVAERTLKEVDVVLWLVEPTTYIGAGEQHIAEQLNQVKTPVILAIN 123

Query: 328 KSDLYSTYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D      E                   +S+   +  + L+  I   L    +      
Sbjct: 124 KIDTVKNQEEILTFISAYKDVCRFAEIVPVSALKDKNTDLLLELIYKYLPAGPQYYDEDT 183

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            + +      ++ +R   +  LN++
Sbjct: 184 VTDQPMRQISAELIREKALRLLNDE 208


>gi|304382195|ref|ZP_07364703.1| GTP-binding protein Era [Prevotella marshii DSM 16973]
 gi|304336660|gb|EFM02888.1| GTP-binding protein Era [Prevotella marshii DSM 16973]
          Length = 303

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 70/164 (42%), Gaps = 20/164 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +
Sbjct: 17  VNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTDDMQIVFSDTPGVLQPN 76

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--ISFPKN-----IDFIFIGTKSDLYST 334
             +++     +   + +AD++L + ++  K E  + F +         + +  K D    
Sbjct: 77  YKLQESMRAFSESALTDADVLLYVTDVVEKPEKNMDFLQKVQKISTPVLLLINKIDRSDQ 136

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                                IS+    G++ L+ +IK +L + 
Sbjct: 137 QTLGNIVERWHELLPNAEILPISAKNQFGIDILLKRIKDLLPDA 180


>gi|256832283|ref|YP_003161010.1| GTP-binding proten HflX [Jonesia denitrificans DSM 20603]
 gi|256685814|gb|ACV08707.1| GTP-binding proten HflX [Jonesia denitrificans DSM 20603]
          Length = 509

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 100/259 (38%), Gaps = 31/259 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKK 242
               + +   +  L+ +I++     + K     +N    + I+G++NAGKSSL NAL   
Sbjct: 250 ELDRRRIRTRMAKLRREIAAMKPAREAKRSSRRKNAVPAVAIVGYTNAGKSSLLNALTGA 309

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G +  ++DT G          E  + T  E  +AD+I
Sbjct: 310 GVLVQNALFATLDPTVRRTKTPDGRVYTLADTVGFVRHLPHQLVEAFRSTLEETADADII 369

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYT-------EEYDHL 342
           + + +                  +I    +I  I +  K+D+            E     
Sbjct: 370 VHVVDGAHPDPAGQIAAVRTVLADIDGVSDIPEIIVVNKADIAPPEAIAQIRSMERDVWA 429

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT------VRYLEMASLN 396
           +S+ TG G+EEL+  I  IL     ++  ++P H+  L            +R+ E  +  
Sbjct: 430 VSAHTGAGIEELLGHIADILPAPGVEIHLTVPYHRGDLLSRMHAEGEIDELRHTEQGTFV 489

Query: 397 EKDCGLDIIAENL-RLASV 414
                 D+ A +L R+A  
Sbjct: 490 AGRVPEDLAA-DLHRVAID 507


>gi|291301883|ref|YP_003513161.1| small GTP-binding protein [Stackebrandtia nassauensis DSM 44728]
 gi|290571103|gb|ADD44068.1| small GTP-binding protein [Stackebrandtia nassauensis DSM 44728]
          Length = 465

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 17/168 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  +  A+V D+PG TRD +  D    G    + DT G     
Sbjct: 25  VAVVGRPNVGKSTLVNRLIGRRQAVVEDVPGVTRDRIAYDAQWNGRKFTVVDTGGWEPDA 84

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYS 333
                    +    +  +D+I+L+ +         ++   +        I +  K D   
Sbjct: 85  VGRAAAIAAQAEQAIAASDVIVLVVDATVGATDVDDAAARVLHRAAKPVILVANKVDSVR 144

Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
              +            H IS+  G G  +L++ I   L         +
Sbjct: 145 AEADATQLWSMGLGEPHPISALHGRGSGDLLDIILDALPELPSVDDDT 192



 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 91/239 (38%), Gaps = 29/239 (12%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--Y 220
           +K+  +R+  +A   +S      +  S         L + I   + +    +    G   
Sbjct: 138 NKVDSVRAEADATQLWSMGLGEPHPISALHGRGSGDLLDIILDALPELPSVDDDTEGGPR 197

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKSSL N LA +D  +V  + GTT D +   ++L G   +  DTAG+R+ 
Sbjct: 198 RVALVGKPNVGKSSLLNRLAGEDRVVVDSVAGTTVDPVDSLIELGGETWQFVDTAGLRKR 257

Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKS 329
                  E     RT   VE A++ ++L + +        +            +    K 
Sbjct: 258 VKQASGTEYYASLRTQSAVEAAEVAVVLLDASEPISEQDQRVITQVVESGRALVIAFNKW 317

Query: 330 DLYST-----YTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL         + E D             IS+ TG  + +L   + + L    +++P  
Sbjct: 318 DLVDEDRRFQISREIDRDLRRVQWAPRVNISAATGRSVAKLTPFLHTALEGWEQRVPTG 376


>gi|223993343|ref|XP_002286355.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977670|gb|EED95996.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 465

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 14/137 (10%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            K G++     ++ ILG  N GKS+L N+L  +D  I  D PG TRD +++ L  +   V
Sbjct: 142 SKDGDMSNRPLQLAILGRQNVGKSTLVNSLLGEDRVIAGDTPGLTRDSISVPLMWKDKHV 201

Query: 270 KISDTAGI-----RETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISFP--- 317
           ++ DTAGI     RE  + +E   +      ++ AD+ +L+ +  +    ++E++     
Sbjct: 202 QLVDTAGIRRGVKRERSNEIEDLAVLDAMRAMKFADVAVLVLDAQARYIQRQELAIADAV 261

Query: 318 --KNIDFIFIGTKSDLY 332
             +    +    K DL 
Sbjct: 262 VREGRALVVAANKMDLI 278


>gi|291563937|emb|CBL42753.1| GTP-binding protein Era [butyrate-producing bacterium SS3/4]
          Length = 300

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 75/194 (38%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L N L  + +AI ++ P TTR+ +      E   +   DT 
Sbjct: 5   YKSGF-VTLIGRPNVGKSTLMNHLIGQKIAITSEKPQTTRNRIQTVYTDEHGQIIFLDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKE----ISFPKNIDFIFIGT 327
           GI +  + + +  +      +   D+IL L E    I S ++    +        I +  
Sbjct: 64  GIHKAKNKLGEYMVNVAEHTLREVDVILWLVEPGTYIGSGEQHILKVLQTVKTPVILVIN 123

Query: 328 KSD---------LYSTYTEEY----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D            TY + Y       +S+      + LI+ I   L    +       
Sbjct: 124 KIDTVKKEDILKTIETYKDAYHFKEVIPVSAMKKTNTDTLIHTIFQYLPEGPQYYDEDTV 183

Query: 375 SHKRHLYHLSQTVR 388
           + +      ++ +R
Sbjct: 184 TDQPMRQIAAELIR 197


>gi|319790369|ref|YP_004152002.1| GTP-binding proten HflX [Thermovibrio ammonificans HB-1]
 gi|317114871|gb|ADU97361.1| GTP-binding proten HflX [Thermovibrio ammonificans HB-1]
          Length = 366

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 108/262 (41%), Gaps = 30/262 (11%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            + T+  +       S    S       +L+ +   +        + +V+  + +  ++ 
Sbjct: 105 RARTKEAKLQVELAKSYYQLSHIRGMGKQLSRLGGGVGTRGPGETKTEVEARAIRRRIHK 164

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +     ++ S     +     R    + ++G++N GKS+L  AL +K+V  V D+P  T 
Sbjct: 165 LRKELEEVLSRQELQRYNRKRRGQKTVAVVGYTNVGKSTLVRALTRKEV-FVKDMPFATL 223

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KK 312
           DV T  L L G  V ISDT G  +          + T  EV+ ADL+L++ + +S   ++
Sbjct: 224 DVRTGSLYLNGETVLISDTVGFIKNLPHELVASFRATLSEVKEADLLLVVFDASSETAEE 283

Query: 313 EISFPK---------NIDFIFIGTKSD---------------LYSTYTEEYDH--LISSF 346
           E++  K         +   IF+  K+D               L     EE     LIS+ 
Sbjct: 284 ELNSVKEVLKRLRSWDKPKIFVANKTDKLVSSPQELEELKGELLLKIPEENPKLVLISAV 343

Query: 347 TGEGLEELINKIKSILSNKFKK 368
            G GLEEL   I+  L +  ++
Sbjct: 344 KGWGLEELKRAIEEALKSSPQE 365


>gi|225631158|ref|ZP_03787866.1| GTP-binding protein Era [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591145|gb|EEH12319.1| GTP-binding protein Era [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 294

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 23/164 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G  NAGKS+L N++  K +AIVT    TTR  +          V  +D+ GI   +
Sbjct: 9   VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQVVFTDSPGIFSAE 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFPK---------NIDFIFIGTKSDL 331
             +EK  ++  +  V+++D+ LLL +++   K I   K             I +  K+DL
Sbjct: 69  TKLEKALVRSAWSAVKDSDITLLLVDVSHYLKNIERIKTIFMRLQRTKGRCILVINKTDL 128

Query: 332 YST-------------YTEEYDHLISSFTGEGLEELINKIKSIL 362
                           Y  E   +IS+   +GL +L+N +  + 
Sbjct: 129 VKRPELKMAHEHLNLLYKFEKVFMISALKNDGLSDLMNYLSEVA 172


>gi|254526472|ref|ZP_05138524.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9202]
 gi|221537896|gb|EEE40349.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
           9202]
          Length = 121

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 7/122 (5%)

Query: 325 IGTKSDLYS-----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           +G K DL       +   +   L+S    +G   LI+ I        +    +I  ++RH
Sbjct: 1   MGNKKDLIDCKNINSNELKNTILMSIKNNDGERLLIDTIIKK-CGLKQFENINIFLNERH 59

Query: 380 LYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438
           L +LS  +  L +   + E     D+++  LR    +L KITG    E+LLD IFSKFCI
Sbjct: 60  LANLSACLSNLNDTDEIIENKLPFDLLSIELRDGIQNLSKITGQELTEELLDNIFSKFCI 119

Query: 439 GK 440
           GK
Sbjct: 120 GK 121


>gi|257784575|ref|YP_003179792.1| GTP-binding proten HflX [Atopobium parvulum DSM 20469]
 gi|257473082|gb|ACV51201.1| GTP-binding proten HflX [Atopobium parvulum DSM 20469]
          Length = 437

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 114/271 (42%), Gaps = 28/271 (10%)

Query: 135 ISSETEMQR-RLSMEGMSGELSSLYGQWIDKLTH-IRSFIEADLDFSEEEDVQNFSSKEV 192
           I + T+  R ++ +  +   L  L G W   +    R  I +   F + E       + +
Sbjct: 122 IHARTKEGRLQVQLAQLQYVLPRLRGMWSHLVGEQTRGGIGSR--FGQGESQLEVDRRLI 179

Query: 193 LNDILFLKNDISSH--ISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
              I  LKN++       + +      +G + + ++G++NAGKS+L N L   DV    D
Sbjct: 180 RKRISTLKNELKQLGQRREIQSKSRWNSGTFSVSLVGYTNAGKSTLLNQLTGADV-YAKD 238

Query: 250 IPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D  T  L L+ G  + ++DT G  +       E  K T +E + ADL+LL+ + 
Sbjct: 239 ELFATLDPTTRALSLDEGRKIVLTDTVGFIQKLPTNLIESFKSTLIEAQEADLLLLVADA 298

Query: 309 NSK---KEISFPK---------NIDFIFIGTKSDLYSTYTEEY-------DHLISSFTGE 349
             K   KEI+  +           D + +  K DL S    +           IS+  G 
Sbjct: 299 TDKNLSKEIAVVRSILKDIEADKSDQVLVLNKVDLLSEQELQMLKALYPDAVFISAQKGT 358

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           G+  L++KI+ I S   K +   IP +K  L
Sbjct: 359 GINGLLHKIQEIASTGDKVVSALIPFNKGAL 389


>gi|86608744|ref|YP_477506.1| GTP-binding protein Era [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557286|gb|ABD02243.1| GTP-binding protein Era [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 361

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 22/198 (11%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G  N GKS+L NAL  + VAI + +  TTR+ L   L L    +   DT GI +   
Sbjct: 72  ALIGRPNVGKSTLLNALVGQKVAITSPVAQTTRNRLQGILSLPQAQIIWVDTPGIHKPHH 131

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYST- 334
            + +  +      +   D+IL + + +              P     + +  K+DL    
Sbjct: 132 RLGEILVHNAQAAIAAVDVILFVVDGSVPAGRGDAFIAERIPAASPCLIVCNKADLLPRD 191

Query: 335 --------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                                 +S+     L  LI     +L       P  + + +   
Sbjct: 192 AAVRQAHQESYQALRPGAPVVWVSALDPSSLTPLIQATIDLLPTGPYYYPPDLVTDQPER 251

Query: 381 YHLSQTVRYLEMASLNEK 398
           + +++ +R   +    E+
Sbjct: 252 FIMAELIREQVLLQTREE 269


>gi|114565878|ref|YP_753032.1| small GTP-binding protein domain-containing protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114336813|gb|ABI67661.1| small GTP-binding protein domain [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 402

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 17/167 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  NAGKSSL NAL ++++A+V+++PGTT D +   +++       I DTAG
Sbjct: 8   NRLHIAIFGRRNAGKSSLINALTRQEIALVSEVPGTTTDPVFKAMEILPIGPCMIIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTK 328
           I +   + E   IK+T   +   DL LL+ +            K+    + I  I +  K
Sbjct: 68  IDDEGQLGELR-IKKTREVLNQTDLALLVIDPALGISEFEKELKQAIRSRKIALIGVLNK 126

Query: 329 SDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368
           +D      +  +         +SS +GEG+E L  +I       F++
Sbjct: 127 TDQGQVDKKSLEKQLGLSLVAVSSRSGEGIEFLKERIIERAPAHFEE 173


>gi|298490731|ref|YP_003720908.1| GTP-binding protein Era ['Nostoc azollae' 0708]
 gi|298232649|gb|ADI63785.1| GTP-binding protein Era ['Nostoc azollae' 0708]
          Length = 318

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 78/210 (37%), Gaps = 22/210 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L  + +AI + I  TTR+ L   L  +   +   DT GI +  
Sbjct: 29  IGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGILTTDKAQLIFVDTPGIHQPH 88

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             + +  +K   + +E+ D++L + +  +          E+        I    K D   
Sbjct: 89  HQLGEVLVKNAKIAIESVDVVLFVVDGTAACGGGDRFITELLSRSQTAVILGINKIDEQP 148

Query: 334 TYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E+ D                 S+ T  GL E    +   L       P  + + +  
Sbjct: 149 ADAEKLDDSYIQLAKEHQWETIKFSAKTALGLVEAQELLIEHLEPGPFYYPPDLVTDQPE 208

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            + + + +R   +    E+      IA +L
Sbjct: 209 QFIMGELIREQILLLTREEVPHSVAIAIDL 238


>gi|329766983|ref|ZP_08258511.1| GTP-binding protein Era [Gemella haemolysans M341]
 gi|328837708|gb|EGF87333.1| GTP-binding protein Era [Gemella haemolysans M341]
          Length = 302

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 23/213 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E I+ G+ + I+G  NAGKS+L N + ++ +AI++D P TTR+++          +   D
Sbjct: 4   EQIKTGF-VTIIGRPNAGKSTLLNNILQQKIAIMSDKPQTTRNIINGVYTDNDSQIVFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFI 325
           T GI +    +    +K     ++ ++++ L+   + K          I     +    +
Sbjct: 63  TPGIHKPKHRLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFLL 122

Query: 326 GTKSDLYST---------YTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL S          Y + YD      IS+     ++ L+N  K  L   FK  P  
Sbjct: 123 INKIDLISPEQLIQIIEFYKDLYDFVEIVPISALKSINVDNLLNTTKKYLQPSFKMYPDD 182

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
           + +     + +S+ +R  ++  L E++    I 
Sbjct: 183 VITDSPEYFVISEFIRE-KVLQLTEQEIPHSIA 214


>gi|325294346|ref|YP_004280860.1| small GTP-binding protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325064794|gb|ADY72801.1| small GTP-binding protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 430

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 17/159 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G +N GKSS  N +  ++V+IV+DIPGTT DV+   +++     V   DTAGI 
Sbjct: 10  LHIGVFGRTNVGKSSFINLVTGQEVSIVSDIPGTTTDVVEKAMEILPIGPVLFLDTAGID 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN-------SKKEISFPKNIDFIFIGTKSD- 330
           +   ++ KE +++ F  +   D+ LL+ E N       S  ++   K I ++ +  K D 
Sbjct: 70  DET-LLGKERVRKAFEVLRRCDVALLMLEPNVFTEFESSLIKLFEEKKIPYVVVINKIDV 128

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  L +   ++   +         E+++ K+K+ L
Sbjct: 129 QKPEKEFLKNFEEKKIPVIEICALKNKREDILAKLKTAL 167


>gi|99034984|ref|ZP_01314786.1| hypothetical protein Wendoof_01000391 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 294

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 23/164 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G  NAGKS+L N++  K +AIVT    TTR  +          +  +D+ GI   +
Sbjct: 9   VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQIVFTDSPGIFSAE 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFPK---------NIDFIFIGTKSDL 331
             +EK  +K  +  V+++D+ LLL ++++  K I   K             I +  K+DL
Sbjct: 69  TKLEKALVKSAWSAVKDSDITLLLVDVSNYLKNIERIKTIFMRLQRTKGRCILVINKTDL 128

Query: 332 YST-------------YTEEYDHLISSFTGEGLEELINKIKSIL 362
                           Y  E   +IS+   +GL +L+N +  + 
Sbjct: 129 VKRPELKMAHEHLNLLYKFEKVFMISALKNDGLSDLMNYLSEVA 172


>gi|91789484|ref|YP_550436.1| GTP-binding protein Era [Polaromonas sp. JS666]
 gi|91698709|gb|ABE45538.1| GTP-binding protein Era [Polaromonas sp. JS666]
          Length = 314

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 73/199 (36%), Gaps = 16/199 (8%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G  I I+G  N GKS+L NAL  + ++I +    TTR  +T    +        D
Sbjct: 22  ETQRCGL-IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGVRTVGATQFVFVD 80

Query: 274 TAGIRETDDIVEKEGIKRTFL-EVENADLILLLKE------INSKKEISFPKNIDFIFIG 326
           T G +          + RT +  V + DLI+ + E       ++K     P     I + 
Sbjct: 81  TPGFQTRHGNALNRSLNRTVVGAVNDVDLIVFVVEAGQFNLADAKVLALLPAKTPAILLA 140

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELI-------NKIKSILSNKFKKLPFSIPSHKRH 379
            K DL     E    L S        E +         I+ +     K LP   P   R 
Sbjct: 141 NKFDLIYRRAELAPWLRSMQERHNFAEFVPMSANNAKDIERLFGICEKYLPVQ-PWMYRA 199

Query: 380 LYHLSQTVRYLEMASLNEK 398
                ++ R++    + EK
Sbjct: 200 DELTDRSDRFMAAEIIREK 218


>gi|302871114|ref|YP_003839750.1| small GTP-binding protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302573973|gb|ADL41764.1| small GTP-binding protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 403

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 19/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSSL NA+  + +AIV++ PGTT D +   +++     V + DTAG
Sbjct: 8   ERLHIAIFGKRNAGKSSLINAITNQPIAIVSETPGTTTDPVYKSMEILPLGPVVLIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADL-ILLLKEINS----KKEISF--PKNIDFIFIGTKS 329
           I +  ++  K  +++T   +   D+ IL++ +I      ++ I+    K +  I +  K 
Sbjct: 68  IDDVGELG-KLRVEKTLEVLNKTDIAILVVSDIEDLSYERQLINLFNEKKVPKIGVLNKI 126

Query: 330 DLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKL 369
           D   +Y E+   L           S  T +G++EL + +  ++ +  + L
Sbjct: 127 DKDPSYKEKLSFLQQSLGIPFLAVSCATLKGIDELKSSLAKLVPDVGEDL 176


>gi|258511948|ref|YP_003185382.1| GTP-binding protein Era [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478674|gb|ACV58993.1| GTP-binding protein Era [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 298

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L NAL  + VAI+++ P TTR+ +      E   +   DT 
Sbjct: 3   YKSGF-VALIGRPNVGKSTLLNALVGQKVAIMSNRPQTTRNRIRGVRTTETSQMIFIDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN-----IDFIFIGT 327
           GI +    + +  +      +   D+I+L+ + +S     E    K         I    
Sbjct: 62  GIHKPKHRLGEYMVDAALKTLNEVDVIVLVVDASSPVHPTEQEIAKQLERVRTPVILALN 121

Query: 328 KSD------LYSTYTEEYD--------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D      L     EEY           IS+  GE ++ L   I+  L    K  P  +
Sbjct: 122 KVDALEDRALVLKRIEEYQALRPFEEYVPISALRGEQVDLLAEIIEKRLPEGPKYYPDDM 181

Query: 374 PSHKRHLYHLSQTVR 388
            + +   + +S+ VR
Sbjct: 182 ITDQPESFIISEIVR 196


>gi|240850198|ref|YP_002971591.1| GTP-binding protein Era [Bartonella grahamii as4aup]
 gi|240267321|gb|ACS50909.1| GTP-binding protein Era [Bartonella grahamii as4aup]
          Length = 301

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 79/189 (41%), Gaps = 24/189 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +V++G  NAGKS+L N L    V+IVT    TTR ++   +  +   + + DT G
Sbjct: 8   RSGF-VVLIGMPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLIRGIVIHDDVQIVLVDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
           +      +E+  +   +   ++AD++L+L +  S          +I      + + +  K
Sbjct: 67  VFRPHKRLERAMVSAAWGGAKSADVLLVLIDAQSGLSDEVDMMLDIVNNMKQEKVLVLNK 126

Query: 329 SD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP- 374
            D             +          +IS+  G G ++L++ + +++       P     
Sbjct: 127 VDTVVKSSLLALTTKINERVKFAQTFMISALNGSGCKDLLHALSNMMQEGPWYYPEDQIS 186

Query: 375 -SHKRHLYH 382
               RHL  
Sbjct: 187 DMPMRHLAA 195


>gi|78779761|ref|YP_397873.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9312]
 gi|78713260|gb|ABB50437.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9312]
          Length = 303

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + +LG  N GKS+L N L  + + I + I  TTR+ L   L  +   +   DT 
Sbjct: 4   YRSGF-VTLLGRPNVGKSTLINKLIGEKITITSPIAQTTRNKLKGILTTKNGQIIFVDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGT 327
           G+ +    + +  +K     +   D+++++ + + +                 +FI    
Sbjct: 63  GVHKPHHRLGEILVKNAKSAINGVDMVIVVVDSSEEPGRGDEYIMNFLVANQTEFIVALN 122

Query: 328 KSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL +    +                   S+  GEG  EL+N + + L    K     +
Sbjct: 123 KWDLVNEEFRKLRLDQYRKFFGINRNFQILSASQGEGCSELVNMLLTFLPEGPKLYDEDM 182

Query: 374 PSHKRHLYHLSQTVR 388
              +     LS  VR
Sbjct: 183 ICDQPLDNLLSDLVR 197


>gi|225619005|ref|YP_002720231.1| GTP-binding protein [Brachyspira hyodysenteriae WA1]
 gi|225213824|gb|ACN82558.1| GTP-binding protein [Brachyspira hyodysenteriae WA1]
          Length = 397

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 22/163 (13%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAG 276
           N   I I G  NAGKSS+ NA+A + +AIV+D  GTT D +   +++ G     I DTAG
Sbjct: 11  NRTHIAIFGRRNAGKSSIINAIANQYIAIVSDTAGTTTDPVKKAIEINGIGACVIVDTAG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKN-----IDFIFIG 326
             +  D+     I+RT   +E++D+ LL+ +      +   E+ +        I  I + 
Sbjct: 71  FDDEGDLGALR-IERTKKIMESSDIALLVFDASFIDNDYSLELKWKNKLESLEIPIISVL 129

Query: 327 TKSDLYSTYTEEYDHLISSFTGE----------GLEELINKIK 359
            K DL + Y     ++   F  E           +++LI+ IK
Sbjct: 130 NKIDLNADYKNIEQNIKEIFNLETVSISADNKINIDKLIDAIK 172


>gi|199599319|ref|ZP_03212717.1| GTPase [Lactobacillus rhamnosus HN001]
 gi|258508545|ref|YP_003171296.1| GTP-binding protein era [Lactobacillus rhamnosus GG]
 gi|199589758|gb|EDY97866.1| GTPase [Lactobacillus rhamnosus HN001]
 gi|257148472|emb|CAR87445.1| GTP-binding protein era [Lactobacillus rhamnosus GG]
 gi|259649852|dbj|BAI42014.1| GTP-binding protein Era [Lactobacillus rhamnosus GG]
          Length = 300

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +  + +AI++    TTR+ +          +   DT GI +  
Sbjct: 9   VAIIGRPNVGKSTFMNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYS 333
           + ++    K     +   D IL +   + +K                    I  K DL  
Sbjct: 69  NELDDYMDKAALSTLNQVDAILFMVAADEQKGAGDAYILRQLAEVKKPVYLILNKIDLVK 128

Query: 334 -----TYTEEYDHLI--------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                   E Y H          S+  G  ++EL+N + + L    +  P    +     
Sbjct: 129 PDDLLPLIESYQHDYHFAQVFPISATMGNNVDELLNSLTATLPEGPQYYPEDQLTDHPEY 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGELIR 196


>gi|312143999|ref|YP_003995445.1| GTP-binding protein Era [Halanaerobium sp. 'sapolanicus']
 gi|311904650|gb|ADQ15091.1| GTP-binding protein Era [Halanaerobium sp. 'sapolanicus']
          Length = 293

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 84/194 (43%), Gaps = 23/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L N L  + + I++  P TTR+ +      E   +   DT 
Sbjct: 3   YKSGF-VTVIGRPNVGKSTLVNNLVGEKINIISPRPQTTRNSIKAIYTEEKGQIIFIDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKN 319
           GI +  + ++K  ++  +  ++  D+I+ + +                 +SKK I +  N
Sbjct: 62  GIHQARNKLDKFMLEEAYSSLDGIDIIIFILDASTYWGKNDQMIYDQIKSSKKNIIYVMN 121

Query: 320 IDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                I  K  L     YS    E    IS+   + ++ L+ +I S L    +  P  + 
Sbjct: 122 -KIDKISNKDLLLRQKKYSQKVGEEVIPISALNNKNIDTLLEEIFSYLPEGPQYYPEDMI 180

Query: 375 SHKRHLYHLSQTVR 388
           + +   +  ++ +R
Sbjct: 181 TDQIERFVFAELIR 194


>gi|193213835|ref|YP_001995034.1| GTP-binding protein Era [Chloroherpeton thalassium ATCC 35110]
 gi|193087312|gb|ACF12587.1| GTP-binding protein Era [Chloroherpeton thalassium ATCC 35110]
          Length = 321

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 28/207 (13%)

Query: 210 GKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            K  +    G+K     ILG  NAGKS+L N L  + ++IVT  P TTR  +      + 
Sbjct: 12  AKQNDPQNKGFKAGFATILGEPNAGKSTLLNVLLGEKISIVTPKPQTTRKRVLGIFTDKS 71

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPK 318
             + + DT GI +    + +  +      VE++D+++LL ++          K +++F +
Sbjct: 72  CQIVLLDTPGIMKPKYKLHEAMLDLADKSVEDSDVLVLLLDVEKYQKGKAELKADLAFQR 131

Query: 319 ----NIDFIFIGTKSD---------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSI 361
                   I +  K D         L + ++ EY        S+  G  + E +  +   
Sbjct: 132 IANTKKPVILVLNKVDLITKDASLELIAKFSSEYPFREIVPLSALKGYNIREFLKAVVPY 191

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           L       P  I S     + +S+ +R
Sbjct: 192 LPASPPLYPPDILSTAPERFFVSEIIR 218


>gi|326803486|ref|YP_004321304.1| ribosome biogenesis GTPase Era [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650900|gb|AEA01083.1| ribosome biogenesis GTPase Era [Aerococcus urinae ACS-120-V-Col10a]
          Length = 303

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 85/207 (41%), Gaps = 23/207 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
             +G+ + I+G  N GKS+L N +  + VAI++D   TTR+ +      +   +   DT 
Sbjct: 7   YHSGF-VAIVGRPNVGKSTLLNHIIGQKVAIMSDKAQTTRNKIHAIYTTDEVQIVFIDTP 65

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           GI +    + +  +K  +  ++  ++IL+L     K         E     N   I    
Sbjct: 66  GIHKPKHELGEYMVKSAYSALDEVEVILMLVNSTEKIGPGDRFIMEKIAAYNTPKILAVN 125

Query: 328 KSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K+D             + +    +    +S+ TG+ +++L+ ++   +    +  P    
Sbjct: 126 KTDQLDKEDLAAYLESIPNKDIFDQIIPLSALTGDNVDQLLKELTKEMPLGPQYYPEDQV 185

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCG 401
           +     + +S+ +R  ++  L  ++  
Sbjct: 186 TDHPEYFVVSEMIRE-QILQLTREEIP 211


>gi|160933320|ref|ZP_02080708.1| hypothetical protein CLOLEP_02165 [Clostridium leptum DSM 753]
 gi|156867197|gb|EDO60569.1| hypothetical protein CLOLEP_02165 [Clostridium leptum DSM 753]
          Length = 305

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKSSL NA+  + VAIV+  P TTR  +T  L      +   DT G+ +  
Sbjct: 12  IAIVGRPNVGKSSLLNAMLGQKVAIVSSKPQTTRTRITGVLTQRETQLIFIDTPGLHKPR 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKSDLYS 333
             +    ++     V   D  +L+ E     +  ++   K         +    K DL  
Sbjct: 72  TRLGDYMVRSVTESVAGVDSCMLVAEAGKEIAPADLELMKKFKSLSLPAVLAINKIDLLE 131

Query: 334 ----------TYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      + E++D      +S+ TG+G+  L++++K               + +  
Sbjct: 132 DKSVLIRQITKFMEQFDFDAVVPVSAQTGDGVGGLVDELKKQAMPGAHFFDDDALTDQPE 191

Query: 380 LYHLSQTVR 388
                + +R
Sbjct: 192 RVLAGEIIR 200


>gi|149183349|ref|ZP_01861787.1| Era [Bacillus sp. SG-1]
 gi|148848946|gb|EDL63158.1| Era [Bacillus sp. SG-1]
          Length = 297

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 22/195 (11%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + ++G+ I I+G  N GKS+  N +  + +AI++D P TTR+ +          +   DT
Sbjct: 1   MYKSGF-ISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVYTTNESQMIFIDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISFPK----NIDFIFIG 326
            GI +    +    +K     +   D+IL +           E    K          + 
Sbjct: 60  PGIHKPKHKLGDFMMKIAQNTLREVDIILFMINAEEGYGRGDEFIIEKLKGVKTPVFLVL 119

Query: 327 TKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         L   Y   +D      IS+  G  +E LI++I+  L    +  P   
Sbjct: 120 NKIDQLHPDKILPLIEQYNALHDFAAVVPISALEGNNVETLISEIRKELPEGPQYYPADQ 179

Query: 374 PSHKRHLYHLSQTVR 388
            +     + +S+ +R
Sbjct: 180 ITDHPERFIVSELIR 194


>gi|224476675|ref|YP_002634281.1| GTP-binding protein Era [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254783663|sp|B9DNL3|ERA_STACT RecName: Full=GTPase Era
 gi|222421282|emb|CAL28096.1| putative GTP-binding protein Era [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 299

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   DT GI +  
Sbjct: 9   VAIIGRPNVGKSTFMNRVLGHKIAIMSDKAQTTRNKIHGVMTEDDAQIIFVDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-- 331
             +    +K     +   D ++ +   N +         E+          +  K DL  
Sbjct: 69  HKLGDYMMKVAKNTLTEVDAVIFMVNANEEIGRGDEYIMEMLKNIKTPVFLVINKIDLVH 128

Query: 332 ---YSTYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                   E Y+          +S+  G  ++  IN +KS +    +  P    S     
Sbjct: 129 PDQIMPIIESYEKHMHFTEAVPMSALEGLNVDHFINVLKSYMPEGPQYYPDGQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 189 FVVSELIR 196


>gi|294460854|gb|ADE76000.1| unknown [Picea sitchensis]
          Length = 324

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 25/182 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + ++G  N GKS+L N +  + ++IVTD P TTR  +        Y + + DT G
Sbjct: 134 RSGY-VAVVGKPNVGKSTLLNQMIGQKLSIVTDKPQTTRHRILGLCSAPDYQMVLYDTPG 192

Query: 277 -IRETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNIDFIFI 325
            I++    ++   +K       NAD +L + ++            +  +   K    + +
Sbjct: 193 VIQKEMHKLDAMMMKNVHSATGNADCVLTVVDVCRVPEKVNDLFEEDGVDLKKKPPTLLV 252

Query: 326 GTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL                   ++   IS+  G G+E++ N I S L          
Sbjct: 253 LNKKDLMKPGEIAKRMEWYEKFGGADHILSISAKYGHGVEDVKNWIVSKLPYGPAYYSKD 312

Query: 373 IP 374
           I 
Sbjct: 313 II 314


>gi|152993265|ref|YP_001358986.1| GTP-binding protein Era [Sulfurovum sp. NBC37-1]
 gi|151425126|dbj|BAF72629.1| GTP-binding protein Era [Sulfurovum sp. NBC37-1]
          Length = 300

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L  + +A+V+     TR  + I +  E   +   DT GI E +
Sbjct: 14  VAVVGRPNAGKSTLLNHLVGEKLAMVSKKAQATRKRMNIIVMHENAQIIFVDTPGIHEKE 73

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK-------KEISFPKNIDFIFIGTKS----- 329
            ++ K  +      + +ADLI+ L  +  K         ++  KN   I + TK      
Sbjct: 74  RLLNKFMLDEALKAMGDADLIVFLAPVTDKITEYEKFLALNESKNTKHIVVLTKMDHVKQ 133

Query: 330 -DLYSTYTE--------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            D+     E        E     S     G ++L+++I   L          I + +   
Sbjct: 134 GDILKKLGEYQKYQDRFEAIIPFSVNKKVGRKQLLDEITKHLPESPFLYDTEILTTENIR 193

Query: 381 YHLSQTVR 388
               + +R
Sbjct: 194 DIYKELIR 201


>gi|28199177|ref|NP_779491.1| GTP-binding protein Era [Xylella fastidiosa Temecula1]
 gi|182681908|ref|YP_001830068.1| GTP-binding protein Era [Xylella fastidiosa M23]
 gi|32129517|sp|Q87C05|ERA_XYLFT RecName: Full=GTPase Era
 gi|226741405|sp|B2I605|ERA_XYLF2 RecName: Full=GTPase Era
 gi|28057283|gb|AAO29140.1| GTP binding protein [Xylella fastidiosa Temecula1]
 gi|182632018|gb|ACB92794.1| GTP-binding protein Era [Xylella fastidiosa M23]
 gi|307578163|gb|ADN62132.1| GTP-binding protein Era [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 298

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 75/190 (39%), Gaps = 22/190 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279
           +I ++G  N GKS+L NAL    ++IV++ P TTR  L          + + DT G+ RE
Sbjct: 11  RIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIILVDTPGLHRE 70

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------NIDFIFIGTKSD-- 330
               + +   +     +E+ D  LL+ E     E             I  + +  K D  
Sbjct: 71  QKHPMNRLMNRTARGSLEDVDAALLVTESTHWNEEDTLAYNLLNDTGIPVVLVINKIDRF 130

Query: 331 ------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                       +   +T    H +S+   +GL+ L++ + ++L            + + 
Sbjct: 131 KDKSALLPFLTHINENHTFATIHPVSALKRKGLKTLVSDLLALLPEGGPMFSEDEITDRS 190

Query: 379 HLYHLSQTVR 388
             +  S+ VR
Sbjct: 191 QRFLASELVR 200


>gi|323702013|ref|ZP_08113682.1| small GTP-binding protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533099|gb|EGB22969.1| small GTP-binding protein [Desulfotomaculum nigrificans DSM 574]
          Length = 409

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 20/162 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  NAGKSSL N+L  +D+A+V++I GTT D +   +++     V I DTAG
Sbjct: 11  NRLHIAIFGRRNAGKSSLINSLTNQDIAVVSNIAGTTTDPVYKSMEILPIGPVVIIDTAG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTK 328
           I +   + E   ++++   ++ ADL+LL+ +      I           +++  + +  K
Sbjct: 71  IDDVGLLGELR-VEKSKEVLKKADLVLLVIDAAEGITIYEQDLIKECQQRDLPVVTVINK 129

Query: 329 SDLYSTYTEEYDHLI----------SSFTGEGLEELINKIKS 360
            D  S    +               S+ TG+G+ +L   I  
Sbjct: 130 IDQNSVTDNDLADYKNTLGTPVVAVSALTGQGVADLKISIIQ 171


>gi|319405459|emb|CBI79078.1| GTP-binding protein Era [Bartonella sp. AR 15-3]
          Length = 300

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 88/203 (43%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++   +  +   + + DT G
Sbjct: 8   RSGF-VALIGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIYDKTQIILIDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
           +      +E+  +   +   +NAD++L+L ++ S          +I      D I +  K
Sbjct: 67  VFRPHKRLERAMVSAAWGGAKNADILLVLIDVQSGLSDEVSAMLDILKSVEQDKILVLNK 126

Query: 329 SD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D         L +   E+ +     +IS+  G G ++L++ + +I+       P    S
Sbjct: 127 IDTVVKSSLLALTAQVNEQVNFLQTFMISALNGSGCKDLLHYLSTIMQEGPWYYPEDQIS 186

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+++
Sbjct: 187 DMPMRQLAAEITREKLFLRLHQE 209


>gi|290769994|gb|ADD61761.1| putative protein [uncultured organism]
          Length = 322

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 80/198 (40%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G  N GKS+L N +  + +AI ++ P TTR+ +      E   +   DT GI +  
Sbjct: 28  VTFIGRPNVGKSTLMNQIIGQKIAITSNKPQTTRNRIQTVYTDERGQIVFVDTPGIHKAK 87

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSD--- 330
           + + +  +      +   DLI  L E    + + +E    K        + +  K+D   
Sbjct: 88  NKLGEYMVGAAEKTISEVDLICWLVEPTTHLGAAEEHIVEKLKECKTPIVLVINKTDTIK 147

Query: 331 ------LYSTYTEEYDHLIS----SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y +E D +      +  G  +++L++ I S L            + +   
Sbjct: 148 KEEILPVIDCYRKELDFVDIVPVCARNGNNVDDLLDVIFSHLDYGPMYYDEDTVTDQPMK 207

Query: 381 YHLSQTVRYLEMASLNEK 398
             +++ +R   + +LN++
Sbjct: 208 QIVAELIREKALHALNDE 225


>gi|319892624|ref|YP_004149499.1| GTP-binding protein Era [Staphylococcus pseudintermedius HKU10-03]
 gi|317162320|gb|ADV05863.1| GTP-binding protein Era [Staphylococcus pseudintermedius HKU10-03]
 gi|323464338|gb|ADX76491.1| GTP-binding protein Era [Staphylococcus pseudintermedius ED99]
          Length = 298

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 79/204 (38%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   DT 
Sbjct: 4   YKSGF-VTIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTQQDAQIVFLDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           GI +    +    +K     +   D ++ +  +N +         E+          +  
Sbjct: 63  GIHKPKHKLGDYMMKVAKNTLSEIDAVMFMVNVNEEIGRGDEYIMEMLKTVKTPVFLVLN 122

Query: 328 KSDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL            Y    D      IS+  G  ++  IN +KS L    +  P    
Sbjct: 123 KIDLVHPDALMPRIEQYQRYMDFAEIIPISALEGHNVDHFINVLKSYLPEGPQYYPDGQI 182

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           S     + +S+ +R   + + +E+
Sbjct: 183 SDHPEQFVVSELIREKILQTTSEE 206


>gi|256847126|ref|ZP_05552572.1| GTP-binding protein Era [Lactobacillus coleohominis 101-4-CHN]
 gi|256715790|gb|EEU30765.1| GTP-binding protein Era [Lactobacillus coleohominis 101-4-CHN]
          Length = 301

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 80/208 (38%), Gaps = 23/208 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  + VAI++++  TTR+ +      +   +   DT G+ +  
Sbjct: 11  VALIGRPNVGKSTLLNYIVGQKVAIMSNVAQTTRNKIQGIYTTDDAQIVFIDTPGVHKPR 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSD--- 330
             +     + T   +   D +L +   + K+       I+  K+       +  K D   
Sbjct: 71  TKLGDFMERSTMSALAEIDAVLYVVAADEKRGPGDDYIINHLKDVKQPIYLVVNKIDTVH 130

Query: 331 ------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y +          S+  G  +  L+N++   L    +  P    S     
Sbjct: 131 PNELPTIVGQYKDALPFKDIVPVSALQGNNINTLMNELVQELPVGPQYYPSDQISDHPER 190

Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           + +++ +R  ++  L  ++     +A +
Sbjct: 191 FVIAEMIRE-KVFQLTREEVPHS-VAID 216


>gi|326791151|ref|YP_004308972.1| GTP-binding protein Era [Clostridium lentocellum DSM 5427]
 gi|326541915|gb|ADZ83774.1| GTP-binding protein Era [Clostridium lentocellum DSM 5427]
          Length = 302

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+L N L  + VAI+++ P TTR+ +   L  + Y     D
Sbjct: 3   EPFKSGF-VSIIGRPNVGKSTLMNKLIGEKVAIMSNKPQTTRNRIQTVLTTKHYQAVFID 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNI--DFIFI 325
           T GI    + + +  +K     +   D I  L E         ++ I   K I       
Sbjct: 62  TPGIHTPKNKLGEFMVKSAMTTLNEVDAIFYLVEAEPFIGKTDQEIIERLKGIQTPVFLC 121

Query: 326 GTKSDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D            TY E YD      IS++    ++ ++  + + L    +  P  
Sbjct: 122 INKIDSVPRETVLKTIETYREAYDFKEIIPISAYENTNVDAILKCMPAYLPEGPQFFPSD 181

Query: 373 IPSHKRHLYHLSQTVR 388
           + + +     +++ +R
Sbjct: 182 MLTDQPERQIVAEMIR 197


>gi|157413842|ref|YP_001484708.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9215]
 gi|157388417|gb|ABV51122.1| GTP-binding protein ERA [Prochlorococcus marinus str. MIT 9215]
          Length = 303

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + +LG  N GKS+L N L  + + I + +  TTR+ L   L  E   +   DT 
Sbjct: 4   YRSGF-VTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNKLKGILTTENGQIIFVDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGT 327
           G+ +    + +  +K     +   D+++ + + +                  I FI +  
Sbjct: 63  GVHKPHHRLGEILVKNAKSAINGVDMVIFVIDSSEAPGKGDEYILNFLIDNKIKFIVVLN 122

Query: 328 KSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL +                        S+  G+G  EL++ + + L    K      
Sbjct: 123 KWDLVNKEFRNLRLDQYRRFFGMNRNFQSVSASQGQGCSELVDMVLNFLPEGPKLYGEET 182

Query: 374 PSHKRHLYHLSQTVR 388
              +     LS  VR
Sbjct: 183 ICDQPLDNLLSDLVR 197


>gi|254478797|ref|ZP_05092164.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
 gi|214035252|gb|EEB75959.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
          Length = 417

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 22/159 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  NAGKSSL NAL  +++AIV+D+ GTT D ++  +++     V + DTAG+ 
Sbjct: 10  LHIGIFGRRNAGKSSLINALTNQEIAIVSDVAGTTTDPVSKAMEILPIGPVVLIDTAGLD 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI---------NSKKEISFPKNIDFIFIGTKS 329
           +   + +   +K+T+  +   DL +L+ +          +  KEI   K I  + +  K 
Sbjct: 70  DEGPLGQMR-VKKTYEVLNRTDLAILVIDGAEGVTKFEEDILKEIRD-KGIPVVGVINKK 127

Query: 330 DL---YSTYTEEYD-------HLISSFTGEGLEELINKI 358
           DL     T   E++         +S+   EG+EEL  +I
Sbjct: 128 DLSNYSQTQKREWERRLGLRLIEVSAANREGIEELKLEI 166


>gi|331697587|ref|YP_004333826.1| GTP-binding protein engA [Pseudonocardia dioxanivorans CB1190]
 gi|326952276|gb|AEA25973.1| GTP-binding protein engA [Pseudonocardia dioxanivorans CB1190]
          Length = 486

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 11/125 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279
           ++ ++G  N GKSSL N ++ +  ++V D+ GTT D +   ++L+G + +  DTAG+R+ 
Sbjct: 223 RVALVGKPNVGKSSLLNKVSGELRSVVHDVAGTTVDPVDSLVELDGEIWRFVDTAGLRKR 282

Query: 280 --TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKS 329
             T    E     RT   +E A++ ++L + +        +            + +  K 
Sbjct: 283 VRTASGTEFYASLRTQSAIEAAEVAVVLIDASEPIAEQDQRVIGMVEEAGRALVLVFNKW 342

Query: 330 DLYST 334
           DL   
Sbjct: 343 DLVDE 347



 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  +  A+V D+PG TRD ++ D    G    + DT G     
Sbjct: 49  LAVVGRPNVGKSTLVNRLIGRREAVVQDVPGVTRDRISYDALWNGRRFTLVDTGGWEPDA 108

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD 330
             ++     +  L +  AD ++L+ + +        +   +    +   I + TK D
Sbjct: 109 TGLQGAVAAQAELAMRTADAVMLVVDASVGATATDEAVARVLRRSDRPVILVATKVD 165


>gi|313202782|ref|YP_004041439.1| GTP-binding protein era [Paludibacter propionicigenes WB4]
 gi|312442098|gb|ADQ78454.1| GTP-binding protein Era [Paludibacter propionicigenes WB4]
          Length = 293

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 75/163 (46%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I+T    TTR  +   ++ + + +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNALVGERISIITSKAQTTRHRILGIVNGDDFQIVYSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKNIDFI-----FIGTKSDLYST 334
             +++  +K +   + +AD++L + ++  + +K   F + +         I  K DL   
Sbjct: 67  YRLQESMLKFSRSALSDADVLLYVTDVFDSYEKNEDFVEKVKLNPAPLLLIINKIDLIDE 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                              + +S+     ++ L ++IK +L  
Sbjct: 127 EKLVVLVEKWKELLPRAEIYPVSALEKFNIDSLFSRIKDLLPE 169


>gi|197122610|ref|YP_002134561.1| GTP-binding protein Era [Anaeromyxobacter sp. K]
 gi|196172459|gb|ACG73432.1| GTP-binding protein Era [Anaeromyxobacter sp. K]
          Length = 310

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 29/217 (13%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            K     R G+ + I+G  N GKS+L N +  + VAIV+  P TTR  +    ++ G  V
Sbjct: 3   SKKKTPFRAGF-VAIVGRPNVGKSTLLNRVLGEHVAIVSPRPQTTRTRILGVHNVPGAQV 61

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG--- 326
              DT G+ +    + +  ++     +   D +L+L E  +  E          +     
Sbjct: 62  AFFDTPGLHKAKGALNRRMVETALSTLSEVDAVLMLIEAGTGPEGRVEVGESTRWAIDEV 121

Query: 327 -----------TKSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSIL 362
                       K D         +   Y   +D       S+ TGE ++ L+  +   L
Sbjct: 122 RRARKPAVLGVNKMDRAPRATLLPVIDAYRGLHDWADIVPFSALTGENVDTLVQALIRRL 181

Query: 363 SNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                 L P  + + +      ++ VR   M    ++
Sbjct: 182 PESDAPLFPADVLTDQAERALAAEYVREQVMLQTRQE 218


>gi|281425283|ref|ZP_06256196.1| hypothetical protein HMPREF0971_02255 [Prevotella oris F0302]
 gi|281400576|gb|EFB31407.1| GTP-binding protein Era [Prevotella oris F0302]
          Length = 293

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 81/187 (43%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTDDCQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPK-----NIDFIFIGTKSDL--- 331
             +++  +  +   + +AD++L + ++  N +K + F        I  + +  K D    
Sbjct: 67  YKMQEMMLAFSESALTDADILLYVTDVVENPEKNMDFLDKVKKMKIPVLLLVNKIDESDQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                     +S         +S+    G++ L+ +IK +L            + K   +
Sbjct: 127 KTLGDIVTKWHSLLPNAEILPLSAKNKFGVDMLLKRIKELLPESPAYFDKDQLTDKPAKF 186

Query: 382 HLSQTVR 388
            +S+ +R
Sbjct: 187 FVSEIIR 193


>gi|220917393|ref|YP_002492697.1| GTP-binding protein Era [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955247|gb|ACL65631.1| GTP-binding protein Era [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 310

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 29/217 (13%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            K     R G+ + I+G  N GKS+L N +  + VAIV+  P TTR  +    ++ G  V
Sbjct: 3   SKKKTPFRAGF-VAIVGRPNVGKSTLLNRVLGEHVAIVSPRPQTTRTRILGVHNVPGAQV 61

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG--- 326
              DT G+ +    + +  ++     +   D +L+L E  +  E          +     
Sbjct: 62  AFFDTPGLHKAKGALNRRMVETALSTLSEVDAVLMLIEAGTGPEGRVEVGESTRWAIDEV 121

Query: 327 -----------TKSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSIL 362
                       K D         +   Y   +D       S+ TGE ++ L+  +   L
Sbjct: 122 RRARKPAVLGVNKMDRAPRATLLPVIDAYRGLHDWADIVPFSALTGENVDTLVQALIRRL 181

Query: 363 SNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                 L P  + + +      ++ VR   M    ++
Sbjct: 182 PESEAPLFPADVLTDQAERALAAEYVREQVMLQTRQE 218


>gi|163867993|ref|YP_001609197.1| GTP-binding protein Era [Bartonella tribocorum CIP 105476]
 gi|161017644|emb|CAK01202.1| GTP-binding protein Era [Bartonella tribocorum CIP 105476]
          Length = 303

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 84/203 (41%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +V++G  NAGKS+L N L    V+IVT    TTR ++   +  +   + + DT G
Sbjct: 10  RSGF-VVLIGMPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLIRGIVIHDDVQIVLVDTPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           +      +E+  +   +   ++AD++L+L +  S       +          + + +  K
Sbjct: 69  VFRPHKRLERAMVSAAWGGAKSADVLLVLIDAQSGLSDEVDRMLDIVNTMKQEKVLVLNK 128

Query: 329 SD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D             +          +IS+  G G ++L++ + +++       P    S
Sbjct: 129 VDTVVKSSLLALTTKINERVKFAQTFMISALNGSGCKDLLHALSNMMQEGPWYYPEDQIS 188

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                +  ++  R      L+++
Sbjct: 189 DMPMRHLAAEITREKLFLRLHDE 211


>gi|299535811|ref|ZP_07049132.1| GTP-binding protein Era-like protein [Lysinibacillus fusiformis
           ZC1]
 gi|298729011|gb|EFI69565.1| GTP-binding protein Era-like protein [Lysinibacillus fusiformis
           ZC1]
          Length = 305

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 24/196 (12%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +NGYK   I I+G  N GKS+  N +  + +AI++D P TTR+ +   L  +   +   D
Sbjct: 5   KNGYKSGFISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTDDSQMIFID 64

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           T GI +    +    +K +   +   D+I+ +     K         E+          +
Sbjct: 65  TPGIHKPKHKLGDFMLKVSKNTLREVDVIMFMVNAEQKLGKGDEFILEMLAGNPTPVFLV 124

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         +  +Y E YD      IS+  G  +E L+  +   L    +  P  
Sbjct: 125 INKIDAIHPDELMGIIESYKERYDFAEIVPISALQGNNVENLLVTLAKYLPEGPQYYPAD 184

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + +S+ +R
Sbjct: 185 QVTDHPERFIISELIR 200


>gi|254450380|ref|ZP_05063817.1| GTP-binding protein [Octadecabacter antarcticus 238]
 gi|198264786|gb|EDY89056.1| GTP-binding protein [Octadecabacter antarcticus 238]
          Length = 489

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 18/152 (11%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDI 283
           +G  N GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ E TD+ 
Sbjct: 1   MGRPNVGKSTLFNRLVCKKLALVDDQPGVTRDLREGAARLGDLRFTVIDTAGLEEATDES 60

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTY 335
           ++      T   VE AD+ L + +             +I   K+   I    KS+  +  
Sbjct: 61  LQGRMRALTERAVEMADVCLFMYDARMGIMPADEVFADILRKKSAKVILAANKSEGRAAD 120

Query: 336 TEEYD---------HLISSFTGEGLEELINKI 358
               +           +S+  GEGL E+ + +
Sbjct: 121 AGVIEGFNLGLGEPIRLSAEHGEGLSEMYDVL 152



 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 35/200 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG----YLVKISDTA 275
            +I ++G  NAGKS+L N +  +D  +     G TRD +++ +D         V+I DTA
Sbjct: 192 LQIAVVGRPNAGKSTLINQILGEDRLLTGPEAGITRDAISVQMDWGPEGATVPVRIFDTA 251

Query: 276 GIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIF 324
           GIR+   +    EK  +      V+ A+++++L ++    E        ++  +    + 
Sbjct: 252 GIRKRAKVQEKLEKLSVADGLRAVKFAEVVVILIDVEIPFEQQDLRLADLAEREGRAVVL 311

Query: 325 IGTKSD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
              K D                  L           +S+ TG G++ L   I        
Sbjct: 312 AVNKWDVEGEKQAKLKELQEQFTRLLPQLKGAPLVTVSAKTGRGIDRLQEAILKAHEVWN 371

Query: 367 KKLPFSIPSHKRHLYHLSQT 386
           +++  +     R L  +++ 
Sbjct: 372 RRI--TTAQLNRWLMGMTEA 389


>gi|158336712|ref|YP_001517886.1| GTP-binding protein Era [Acaryochloris marina MBIC11017]
 gi|158306953|gb|ABW28570.1| GTP-binding protein Era-like protein [Acaryochloris marina
           MBIC11017]
          Length = 315

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 91/234 (38%), Gaps = 27/234 (11%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
            +D+SS  S  +     ++G+ + I+G  N GKS+L N L  + +AI + +  TTR+ L 
Sbjct: 1   MSDLSSLTSIPQASPEFKSGF-VAIVGRPNVGKSTLMNQLIGQKIAITSPVAQTTRNRLR 59

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------- 311
             L      +   DT GI +    + +  +K   + +   D++L + + +          
Sbjct: 60  GILTTPTAQMIFVDTPGIHKPHHQLGEILVKNARMAIHAVDVVLFVVDCSEPLGGGDRFI 119

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEY------------DHLI-----SSFTGEGLEEL 354
            ++    N   I    K D+     ++             +H       S+ T   L+ L
Sbjct: 120 AQLLAQTNTPVILGLNKLDIQRKTAQQALTLDQAYKALAKEHHWPVCKFSALTTAKLKSL 179

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR-YLEMASLNEKDCGLDIIAE 407
             ++   L       P  + + +   + + + +R  + + +  E    + I+ E
Sbjct: 180 QRQLIEKLVPGPYYYPPDLVTDQPERFIMGELIREQILLLTRQEVPHSVAIVIE 233


>gi|160880220|ref|YP_001559188.1| small GTP-binding protein [Clostridium phytofermentans ISDg]
 gi|160428886|gb|ABX42449.1| small GTP-binding protein [Clostridium phytofermentans ISDg]
          Length = 416

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 23/179 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           +     I I G  NAGKSSL NAL  +++AIV+D+ GTT D +   ++L     V   DT
Sbjct: 8   LAERIHIGIFGKRNAGKSSLLNALTGQNIAIVSDVLGTTTDPVLKTMELLPLGPVVFIDT 67

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFP-----KNIDFIFIG 326
            G  + D ++ K+ ++++F  +   +L+L++ +     + ++I F      K + ++ + 
Sbjct: 68  PGFDD-DSLLGKDRVEKSFQMLRKTNLVLVIIDTLKGKTSEDIEFISILRGKKLPYLIVY 126

Query: 327 TKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            K DL              S      +  +S+ T + ++ L  K+   LS + K++P  
Sbjct: 127 NKKDLAESTEKAKSDLNDSSENDNTNEIYLSAKTKDNIDLLKTKMIEALSVEEKQIPIV 185


>gi|189183414|ref|YP_001937199.1| GTP-binding protein EngA [Orientia tsutsugamushi str. Ikeda]
 gi|238692236|sp|B3CR58|DER_ORITI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|189180185|dbj|BAG39965.1| GTP-binding protein, Era/Obg family [Orientia tsutsugamushi str.
           Ikeda]
          Length = 454

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 92/198 (46%), Gaps = 22/198 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L+ ++ +IV D+PG TRD      +L    + + DT G+    
Sbjct: 6   VALVGKPNVGKSTLFNRLSLREKSIVHDLPGITRDRKYAKANLFS-DLIVVDTPGLEFAA 64

Query: 282 DIV-EKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNID----FIFIGTKSD 330
               E   ++++ + +  A +I  + +         ++  +  +  +     I +  K++
Sbjct: 65  AGSLEFNMMQQSLVAINEAHIICFVVDAITGILPIDEECANLIRKHNKQSSTILVINKTE 124

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                 + Y          IS+  G+G+ EL + I++ILS   KK+ F   ++ +  Y+ 
Sbjct: 125 KPIILDKSYYKLGFSESVCISAKHGQGIYELGDIIQNILSED-KKINFLTTTNTKCEYNQ 183

Query: 384 SQTVRYLEMASLNEKDCG 401
            +    LE+A +   +CG
Sbjct: 184 QR--PELELAIVGRPNCG 199



 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 11/132 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   ++ I+G  N GKS+  NA+  +D  +     G TR+ + ID +  G+L+++ DTAG
Sbjct: 185 RPELELAIVGRPNCGKSTFINAILNEDRVLTGPQSGLTRNSVEIDWEYYGHLIRLVDTAG 244

Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFI 325
           +R+ + +    E   +  TF  +  A++++++ +      ++++S       +    + +
Sbjct: 245 VRKKNAVTQSCELLSVNDTFKTIRFANIVVVMIDATRGLEQQDLSIISYAVNEGRGIVLV 304

Query: 326 GTKSDLYSTYTE 337
             K DL     E
Sbjct: 305 VNKWDLIKKKKE 316


>gi|153852706|ref|ZP_01994143.1| hypothetical protein DORLON_00125 [Dorea longicatena DSM 13814]
 gi|149754348|gb|EDM64279.1| hypothetical protein DORLON_00125 [Dorea longicatena DSM 13814]
          Length = 410

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 25/175 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSSL NAL  +++AIV+D+ GTT D +   ++L     + + DT G
Sbjct: 10  ERIHIGIFGRRNAGKSSLINALTGQNLAIVSDVRGTTTDPVFKSMELLPLGPIVMIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTK 328
           + +  ++  K  I++ +  +   D+ +L+ +  S    ++ +       KNI  + +  K
Sbjct: 70  LDDEGELG-KLRIQKAYQVLNKTDIAVLVIDGTSGITPQDNAILTRIQDKNIPLLLVLNK 128

Query: 329 SDLYSTYTE---------------EYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           +DL S +T                E+    ++     + EL   + +++  +   
Sbjct: 129 ADLVSEHTHQEMIVSTHLKYKIPLEHILWTNTTENLHIHELKEHLGTLVPAEESS 183


>gi|87125491|ref|ZP_01081336.1| GTP-binding protein ERA-like protein [Synechococcus sp. RS9917]
 gi|86166791|gb|EAQ68053.1| GTP-binding protein ERA-like protein [Synechococcus sp. RS9917]
          Length = 311

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 84/205 (40%), Gaps = 24/205 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L    VAI + +  TTR+ L   L      + + DT G
Sbjct: 12  RSGF-VALIGRPNVGKSTLVNQLVGDKVAITSPVAQTTRNRLRAILTTPEAQLILVDTPG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
           I +   ++ +  ++     +   DL+LLL E             ++   + +  + +  K
Sbjct: 71  IHKPHHLLGERLVQSARSAIGEVDLVLLLLEGCEAPGRGDAFIIQLLQQQRLPVLVVLNK 130

Query: 329 SD-LYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            D + +    E D              H  S+ +G G  EL+  I + L    +  P  +
Sbjct: 131 WDRVPAERRPEADLAYRELLETPDWPVHHCSALSGAGCPELVQAIAARLPEGPQLYPADM 190

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            S +     +++ +R   +    E+
Sbjct: 191 VSDQPERLLMAELIREQVLLQTREE 215


>gi|91201100|emb|CAJ74159.1| strongly similar to GTP-binding protein Era [Candidatus Kuenenia
           stuttgartiensis]
          Length = 301

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 22/199 (11%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  +  R+GY + ++G  N GKS+L N      ++IVT  P TTR  +   L  E Y + 
Sbjct: 5   QNKKDFRSGY-VAVIGEPNVGKSTLINNYMGCKLSIVTHKPQTTRKKIMGILTKEDYQII 63

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----NIDF 322
             DT GI E    ++K  +K  +  ++ AD++L++ E     +K      K     N   
Sbjct: 64  FFDTPGIIEPTYELQKYMVKTAYSVIKEADILLMMVEPFKQPAKIHRDVVKKLATFNKPI 123

Query: 323 IFIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           + +  K D+                        IS+  G  LE L++ I   L       
Sbjct: 124 LLVINKVDMVEKDKLLPIIASYNTLMKFSEIIPISAKEGTNLERLLSLIVQYLPEGEPLY 183

Query: 370 PFSIPSHKRHLYHLSQTVR 388
           P    +     +  ++ +R
Sbjct: 184 PEDSITDYNERFLAAEIIR 202


>gi|83815627|ref|YP_446187.1| GTP-binding protein Era [Salinibacter ruber DSM 13855]
 gi|294508113|ref|YP_003572171.1| GTP-binding protein [Salinibacter ruber M8]
 gi|83757021|gb|ABC45134.1| GTP-binding protein Era [Salinibacter ruber DSM 13855]
 gi|294344441|emb|CBH25219.1| GTP-binding protein [Salinibacter ruber M8]
          Length = 304

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + ++IVT  P TTR  +        +     DT GI E  
Sbjct: 20  VAIVGKPNVGKSTLMNALLGEKLSIVTKKPQTTRHRVLGIHSGPEHQAIFLDTPGIIEPR 79

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLYST 334
             + +  + +    + +ADL+L L E        + +    +     + TK DL   
Sbjct: 80  YALHETMMGQVQGAIRDADLLLFLHEATQDEPDTQSLKKIGDTPAFLVLTKMDLIPK 136


>gi|82595366|ref|XP_725819.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480965|gb|EAA17384.1| GTP binding protein-related [Plasmodium yoelii yoelii]
          Length = 853

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 83/210 (39%), Gaps = 17/210 (8%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D  ++ D+ +   + + ++    K ++  +  +    +IIRN   + I+G  N GKS++F
Sbjct: 228 DLVKKYDIDDQGQEHINSESE--KKEMGKN-KKYNDLKIIRNLPLVSIIGRPNVGKSTIF 284

Query: 237 NALAK--KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           N L +  ++ +IV D P +TRD      + +GY  ++ DT G+   D+   KE   +  L
Sbjct: 285 NRLTRKFQEGSIVLDKP-STRDKFYGKSEWDGYRFEVVDTGGLIFEDENFSKEIRDQILL 343

Query: 295 EVENADLILLLKEI-----NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
            +E + ++L + +          EI             K     +   EYD         
Sbjct: 344 ALEESSVVLFVVDGINGVHPIDLEICRFLRKFIKKKYNKIISKQSKNGEYD------NES 397

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             E L    K    N       ++  +   
Sbjct: 398 KRELLKCAQKKTYCNNIDSNNENVVDNTFQ 427



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 25/194 (12%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII-----RNGYKIVIL 225
           +I+A   +    +     S    N +  + ++   +I + K+ E+      +N   I  +
Sbjct: 491 YIKAQNFWELGFETPFPCSGIHGNGLSEILDECIKYIKKVKINELEEEEDEKNTINISFI 550

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL--DLEGYLVKISDTAGIRETDD- 282
           G  N GKSS+ N +   +  IV+ I GTT D + + +    +  + ++ DTAGI++    
Sbjct: 551 GKPNTGKSSILNKILNCNRFIVSPIAGTTIDSIDVLVKGKNDKRMYRLIDTAGIQKRKKN 610

Query: 283 -------IVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIG 326
                    E     RT   ++ +D+ +L+          +IN  ++I   +N   I   
Sbjct: 611 VPFNEKTKFEYLLFNRTEKAIKRSDVCVLVIDSFNGISSHDINIARKI-LEENKSCIICC 669

Query: 327 TKSDLYSTYTEEYD 340
            K DL     + ++
Sbjct: 670 NKWDLIYNKNDIFN 683


>gi|4220418|gb|AAD12512.1| Homology to initiation factor DnaA X62539 [Mycoplasma genitalium]
          Length = 91

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 8  IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-KASLRYFFGLDGRILDKGLL 66
          IFA++T    SA+ IIR SGP  +++   I  KK      +    +    + + +D  LL
Sbjct: 10 IFALATAPFNSALHIIRFSGPDVYEILNKITNKKITRKGMQIQRTWIVDENNKRIDDVLL 69

Query: 67 IVFPSPESFTGEDSAEFHVHGG 88
            F SP S+TGED  E   HG 
Sbjct: 70 FKFVSPNSYTGEDLIEISCHGN 91


>gi|298530546|ref|ZP_07017948.1| GTP-binding protein Era [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509920|gb|EFI33824.1| GTP-binding protein Era [Desulfonatronospira thiodismutans ASO3-1]
          Length = 303

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 30/212 (14%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G  NAGKS+L N L  + VAIVT    TTR+ ++  L  + Y V   DT G+ +   
Sbjct: 14  ALVGPPNAGKSTLMNTLVGEKVAIVTPKAQTTRNRISGILSTDRYQVVFMDTPGVNKARG 73

Query: 283 IVEKEGIKRTFLEVENADLILLLKEIN-------------SKKEISFPKNIDFIFIGTKS 329
            + +   +     + +AD++LL+ +                  +         + +  K 
Sbjct: 74  KLGELLNRSAMEGLNSADVVLLVVDTELYVRKPHFLKKDFQPFKKRVSGLSGVVVVSNKI 133

Query: 330 D--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           D              L   + E     +S+ TGEG E L+ +I   +       P    S
Sbjct: 134 DKVRDKKKVLPVWQELSRMFPEREILPVSASTGEGTEILLERILEHMHPGPALYPEDQLS 193

Query: 376 HKRHLYHLSQTVR---YLEMASLNEKDCGLDI 404
                + +++ +R   +L M         ++I
Sbjct: 194 TLPMRFMVAEIIREKLFLAMRQEVPYGLAVEI 225


>gi|291538377|emb|CBL11488.1| iron-only hydrogenase maturation protein HydF [Roseburia
           intestinalis XB6B4]
          Length = 427

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 29/223 (13%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G +N+GKSS  NA   ++V+IV D+ GTT D +   +++       I DTAG
Sbjct: 12  NRLHIGVFGKTNSGKSSFINAFTHQEVSIVADVAGTTTDPVYKPMEISPLGPCVIIDTAG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335
             +  ++ E+  +++T L  E AD+ ++++   ++ +E +                    
Sbjct: 72  FDDETELGERR-VEKTKLAAEKADIAVIVVSGADACREDASETKD--------------- 115

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY-HLSQTVRYLEMAS 394
            +E     S    E L +L  ++K     K K  P      K  +  H  +   Y++  +
Sbjct: 116 AKEKLQQSSEKNQENLPDLTEELKWYQFLKEKNTPVLFLVGKADIDPHTDELASYIKEKT 175

Query: 395 LNEK-------DCGLDIIAENL-RLASVSLGK--ITGCVDVEQ 427
             +          G+D + E L RL   + G   ITG +  E+
Sbjct: 176 GKQALTVSAKTGAGIDTVREELARLVPENYGDRLITGDLVTEE 218


>gi|310779271|ref|YP_003967604.1| GTP-binding protein Era [Ilyobacter polytropus DSM 2926]
 gi|309748594|gb|ADO83256.1| GTP-binding protein Era [Ilyobacter polytropus DSM 2926]
          Length = 298

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 10/127 (7%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ I ++G  N GKS+L N L  + VAIV+D  GTTRD +   L+  G      DT 
Sbjct: 1   MKSGF-IAVVGRPNVGKSTLTNKLVNEKVAIVSDKAGTTRDSIKGILNHGGNQYIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIG 326
           GI +   ++ +         ++  ++I+ + + + +           I        I I 
Sbjct: 60  GIHKPKHLLGEHMTNVAVRSLKEVEVIMFVLDGSQEISTGDKYVMDRILEADKTPRILIV 119

Query: 327 TKSDLYS 333
            K D  S
Sbjct: 120 NKIDKMS 126


>gi|299141483|ref|ZP_07034619.1| GTP-binding protein Era [Prevotella oris C735]
 gi|298576819|gb|EFI48689.1| GTP-binding protein Era [Prevotella oris C735]
          Length = 293

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 81/187 (43%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLIGERISIATFKAQTTRHRIMGIVNTDDCQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPK-----NIDFIFIGTKSDL--- 331
             +++  +  +   + +AD++L + ++  N +K + F        I  + +  K D    
Sbjct: 67  YKMQEMMLAFSESALTDADILLYVTDVVENPEKNMDFLDKVKKMKIPVLLLVNKIDESDQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                     +S         +S+    G++ L+ +IK +L            + K   +
Sbjct: 127 KTLGDIVTKWHSLLPNAEILPLSAKNKFGVDMLLKRIKELLPESPAYFDKDQLTDKPAKF 186

Query: 382 HLSQTVR 388
            +S+ +R
Sbjct: 187 FVSEIIR 193


>gi|257439767|ref|ZP_05615522.1| GTP-binding protein Era [Faecalibacterium prausnitzii A2-165]
 gi|257197787|gb|EEU96071.1| GTP-binding protein Era [Faecalibacterium prausnitzii A2-165]
          Length = 306

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N L  + VAIVT  P TTR  +T  +        + DT G+ +  
Sbjct: 12  VAVIGRPNVGKSSLTNRLVGEKVAIVTSKPQTTRTRITGVVTRGPLQYVLLDTPGVHKAH 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKK----EISFPKNIDFIFIGTKSDLYS 333
           + + K   K     + + D+ ++L E    +N  +    +         I +  K+DL  
Sbjct: 72  NKLGKRMDKTASDSIADVDVSMMLFEPYGALNEPEMVLVDALRSSGGPAIAVINKTDLVK 131

Query: 334 TYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +              +  + +S    +  EEL + +                +    
Sbjct: 132 EPADLEARKAELKELGVFDAIYTVSVRADDHCEELFDALSQYAVEGPHYFDDDAYTDMPE 191

Query: 380 LYHLSQTVR 388
              +++ +R
Sbjct: 192 KELVAEVIR 200


>gi|240146464|ref|ZP_04745065.1| GTP-binding protein [Roseburia intestinalis L1-82]
 gi|257201399|gb|EEU99683.1| GTP-binding protein [Roseburia intestinalis L1-82]
          Length = 427

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 29/223 (13%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G +N+GKSS  NA   ++V+IV D+ GTT D +   +++       I DTAG
Sbjct: 12  NRLHIGVFGKTNSGKSSFINAFTHQEVSIVADVAGTTTDPVYKPMEISPLGPCVIIDTAG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335
             +  ++ E+  +++T L  E AD+ ++++   ++ +E +                    
Sbjct: 72  FDDETELGERR-VEKTKLAAEKADIAVIVVSGADACREDASETKD--------------- 115

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY-HLSQTVRYLEMAS 394
            +E     S    E L +L  ++K     K K  P      K  +  H  +   Y++  +
Sbjct: 116 AKEKLQQSSEKNQENLPDLTEELKWYQFLKEKNTPVLFLVGKADIDPHTDELASYIKEKT 175

Query: 395 LNEK-------DCGLDIIAENL-RLASVSLGK--ITGCVDVEQ 427
             +          G+D + E L RL   + G   ITG +  E+
Sbjct: 176 GKQALTVSAKTGAGIDTVREELARLVPENYGDRLITGDLVTEE 218


>gi|260551499|ref|ZP_05825683.1| GTP-binding protein 16S rRNA-binding, ribosome-associated GTPase
           [Acinetobacter sp. RUH2624]
 gi|260405493|gb|EEW98986.1| GTP-binding protein 16S rRNA-binding, ribosome-associated GTPase
           [Acinetobacter sp. RUH2624]
          Length = 342

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 94/255 (36%), Gaps = 38/255 (14%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D +E +D  N   +   +  + + +D              ++G+ + I+G  N GKS+L 
Sbjct: 11  DSNENQDPNNLIDQFFSSKGVTIPSD-------------FKSGF-VAIVGRPNVGKSTLM 56

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLE 295
           N L  + ++I +  P TTR  +      E       DT G+ + +   + K   +     
Sbjct: 57  NHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKEVRAINKMMNRAAHSA 116

Query: 296 VENADLILLLKEI-----NSKKEISFPKN--IDFIFIGTKSDLYSTYTEEYDHLI----- 343
           + + +L+L + +      N    +   KN  +  I +  K+D +    E    +      
Sbjct: 117 LRDVNLVLFVIDAYKWTQNDDLVLEKLKNAEMPVILVINKADTFEDKREILPLIQERTKL 176

Query: 344 ---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
                    S+  G  LE L   I+  L  +     F   + +   +  S+ +R   M  
Sbjct: 177 MNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITDRSERFLASEIIREKIMRQ 236

Query: 395 LNEKDCGLDI-IAEN 408
           L E +   D+ +   
Sbjct: 237 LGE-ELPYDLTVQIE 250


>gi|240145039|ref|ZP_04743640.1| GTP-binding protein Era [Roseburia intestinalis L1-82]
 gi|257202864|gb|EEV01149.1| GTP-binding protein Era [Roseburia intestinalis L1-82]
 gi|291535364|emb|CBL08476.1| GTP-binding protein Era [Roseburia intestinalis M50/1]
 gi|291538175|emb|CBL11286.1| GTP-binding protein Era [Roseburia intestinalis XB6B4]
          Length = 302

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 85/209 (40%), Gaps = 27/209 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL---TIDLDLEGYLVK 270
           E  ++G+ + I+G  N GKS+L N L  + +AI ++ P TTR+ +     D++     + 
Sbjct: 3   ENFKSGF-VTIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTDMERG--QIV 59

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NIDF 322
             DT GI +  + + +  +      +   D+IL L E         +  I   K      
Sbjct: 60  FLDTPGIHKAKNKLGEYMVNTAEHTLNEVDVILWLVEPSNFIGAGEQHIIEQLKKTKTPV 119

Query: 323 IFIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKL 369
           I +  K D            TY + YD       S+   + L+ +++ I   L    +  
Sbjct: 120 ILVINKVDTVSRDKILEFIDTYRKVYDFAEIVPASALRAQNLDTVLDMIFKYLPYGPQFY 179

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                + +     +++ +R   + +L+++
Sbjct: 180 DEDTITDQPERAIVAEIIREKALHALDDE 208


>gi|239627753|ref|ZP_04670784.1| GTP-binding protein Era [Clostridiales bacterium 1_7_47_FAA]
 gi|239517899|gb|EEQ57765.1| GTP-binding protein Era [Clostridiales bacterium 1_7_47FAA]
          Length = 303

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI +D P TTR+ +      +   +   DT GI +  
Sbjct: 12  VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDDRGQIIFLDTPGIHKAK 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSDLYS 333
           + + +  +      + + D+IL L E ++          E         I +  K D   
Sbjct: 72  NKLGEYMVNVAEHTLRDVDVILWLVEPSTFIGAGERHIAEQLNKVKTPIILVINKIDTVK 131

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E    +               S+   +  + L   I   L    +       + +  
Sbjct: 132 NQDEILTFMAAYKDICDFAEIVPLSALKEKNTDLLTELIFKYLPYGPQFYDEDTVTDQPM 191

Query: 380 LYHLSQTVRYLEMASLNEK 398
               ++ +R   +  LN++
Sbjct: 192 RQIAAELIREKALRLLNDE 210


>gi|167623345|ref|YP_001673639.1| small GTP-binding protein [Shewanella halifaxensis HAW-EB4]
 gi|167353367|gb|ABZ75980.1| small GTP-binding protein [Shewanella halifaxensis HAW-EB4]
          Length = 413

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 20/182 (10%)

Query: 208 SQGKLGEIIRNGYK--IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            +   G+I   G +  I ILG  NAGKSSL N +  + VAIV+DI GTT D +    +L 
Sbjct: 7   PETSQGQIAPRGMRYQIAILGRRNAGKSSLLNMIVGQHVAIVSDIKGTTTDAVAKPYELL 66

Query: 266 GY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-------P 317
               V   DTAGI +   + E+  +K T   +  AD+ LL+ +     E  F        
Sbjct: 67  PLGPVTFFDTAGIDDNGALGEQR-VKATRHVLYRADMALLVADDQGLTEHEFALIEEMTA 125

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKK 368
             + F+ +  K D+     E+              S+  G G +E+   I  ++    K+
Sbjct: 126 LKLPFLIVFNKVDICMPTAEDIGFCRQRKLPFIAVSAAKGLGDKEVKRLISELVPANLKE 185

Query: 369 LP 370
            P
Sbjct: 186 QP 187


>gi|295115531|emb|CBL36378.1| GTP-binding protein Era [butyrate-producing bacterium SM4/1]
          Length = 301

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 73/199 (36%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI +D P TTR+ +      E   +   DT GI +  
Sbjct: 10  VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFLDTPGIHKAK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIG--------- 326
           + + +  +      ++  D+IL L E         +      K +    I          
Sbjct: 70  NKLGEYMVSVAEHTLKEVDVILWLVEPTTFIGAGERHIAEQLKKVKTPVILVINKTDTIK 129

Query: 327 TKSDLYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K D+ +      D          S+   + ++ + + I   L    +       + +  
Sbjct: 130 NKEDILTFIAAYKDICEFAEIIPASALKEKNIDAVKDCIFKYLPEGPQFYDEDTVTDQPM 189

Query: 380 LYHLSQTVRYLEMASLNEK 398
               ++ +R   +  L+++
Sbjct: 190 RQIAAELIREKALRMLDDE 208


>gi|220905798|ref|YP_002481109.1| GTP-binding protein Era [Cyanothece sp. PCC 7425]
 gi|219862409|gb|ACL42748.1| GTP-binding protein Era [Cyanothece sp. PCC 7425]
          Length = 315

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 24/223 (10%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L + I   I     G   ++G+ + ++G  N GKS+L N L  + VAI + +  TTR+
Sbjct: 4   EQLPDFIEVTIPTAPPG--FKSGF-VALIGRPNVGKSTLMNQLIGQKVAITSPVAQTTRN 60

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----- 311
            L   L      +   DT GI +    + +  +K   L +   DL+L + + + K     
Sbjct: 61  RLRGILTTSTAQLIFVDTPGIHKPHHSLGEVLVKNATLAIAAVDLVLFIVDGSVKAGGGD 120

Query: 312 ---KEISFPKNIDFIFIGTKSDL---YSTYTEEYD----------HLISSFTGEGLEELI 355
               E+        +    KSD      T    YD             S+ TGEGL  L 
Sbjct: 121 RFVAELLQKAKTPVMVGVNKSDAQTDPDTLDRSYDSLIAEQGWPLVKFSALTGEGLAALQ 180

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            ++   L       P  + + +   + + + +R   +    E+
Sbjct: 181 TQLIDALPPGPYYYPPDLVTDQPERFIMGELIREQILLQTREE 223


>gi|325265154|ref|ZP_08131880.1| GTP-binding protein [Clostridium sp. D5]
 gi|324029558|gb|EGB90847.1| GTP-binding protein [Clostridium sp. D5]
          Length = 406

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 21/171 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           +   I I G  NAGKSS+ NA+  +++AIV+DI GTT D +   ++L     V I DT G
Sbjct: 10  DRVHIGIFGRRNAGKSSIINAITGQNLAIVSDIKGTTTDPVLKAMELLPLGPVVIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
           + +T ++  K  I++ +  +   D+ +L+ +  +          +    K I F+ +  K
Sbjct: 70  LDDTGELG-KLRIQKAYQILNKTDIAVLVIDSTAGMTEADAGILDRIMKKQIPFVIVLNK 128

Query: 329 SDLYST-----------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           SD+  T              +    +S+ TGE + EL   I      + ++
Sbjct: 129 SDIAGTSNAASSVNMPDVPSDNIIAVSTVTGENIHELKELIARQAPAENEQ 179


>gi|157693029|ref|YP_001487491.1| GTP-binding protein Era [Bacillus pumilus SAFR-032]
 gi|157681787|gb|ABV62931.1| GTPase [Bacillus pumilus SAFR-032]
          Length = 301

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +   L         
Sbjct: 2   TNESFKSGF-VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNSSQTIF 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFI 323
            DT GI +    +    +K     ++  DLIL +           +  I   K       
Sbjct: 61  IDTPGIHKPKHKLGDFMMKVAQNTLKEVDLILFMINAKEGYGKGDEFIIERLKQTSTPVF 120

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K D         L   Y   Y       IS+  G  ++ L+ +++  L    +  P
Sbjct: 121 LVVNKIDQIHPDELFLLIDEYRTRYPFKEIVPISALEGNNIDTLLQQVEGYLPEGPQFYP 180

Query: 371 FSIPSHKRHLYHLSQTVR 388
               +     + +S+ +R
Sbjct: 181 ADQVTDHPERFIISELIR 198


>gi|307109793|gb|EFN58030.1| hypothetical protein CHLNCDRAFT_20741 [Chlorella variabilis]
          Length = 306

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  NAGKS+L NAL ++ ++IVT    TTR  +   L   G+     DT GI  + 
Sbjct: 19  VAIIGRPNAGKSTLMNALLQQKLSIVTPKAQTTRHRILGILSEPGFQAVFLDTPGIIVDK 78

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLY 332
            + +E + +      V +AD +L + + + + + +          K      +  K+DL 
Sbjct: 79  RNKLEDKMMASVQQAVRDADCLLAIVDASHEPQQALAMIQPGDDWKGPPMAVLLNKTDLV 138

Query: 333 STYTEEYDHLI-------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                E                  S+     L+ ++  +   L       P  I S +  
Sbjct: 139 PAEELEALEAWYRQYCKADAVLPISALESSNLDAVVEWLVGKLPEGPSLYPKDIVSEQPE 198

Query: 380 LYHLSQTVR 388
            + +S+ +R
Sbjct: 199 RFFVSEIIR 207


>gi|77919228|ref|YP_357043.1| GTPases [Pelobacter carbinolicus DSM 2380]
 gi|77545311|gb|ABA88873.1| iron-only hydrogenase maturation protein HydF [Pelobacter
           carbinolicus DSM 2380]
          Length = 416

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 18/171 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIR 278
             I + G  N GKSSL NAL +++V+IV+++ GTT D +   ++ L    V   DTAGI 
Sbjct: 10  LHIGLFGRRNVGKSSLLNALTRQNVSIVSNVAGTTTDAVEKPMEMLPIGPVLFIDTAGID 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSDL 331
           +   + E   +++T    +  D+ L++ E     +           + I  + +  K+D+
Sbjct: 70  DVGALGEMR-VQKTRQVFDRTDIGLIVAEAGRWDDFEDAILAELQQRQIPVVVVFNKTDI 128

Query: 332 YSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               T   +            ++  GEG+ EL   +   +  +F   P  +
Sbjct: 129 AQPDTGHLESLSQKDVPCVATAAEKGEGIIELRESLIRTVPEEFINPPSIV 179


>gi|83319405|ref|YP_424480.1| GTP-binding protein Era [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|83283291|gb|ABC01223.1| GTP-binding protein Era [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 301

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 95/215 (44%), Gaps = 25/215 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + ++IVT+ P TTR+ +   L  +  Y +   DT G+  T
Sbjct: 9   VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDKYQIVFIDTPGVHTT 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFI--FIGTKSD-- 330
              ++K          ++ D+IL L   +          +   KN+D     + TK+D  
Sbjct: 69  KKQLDKFLNTSALKSTKDVDVILFLAPSDEVIGKNDLFLLKQIKNLDVFKILVITKADNV 128

Query: 331 ----------LYSTYTEEYD--HLISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHK 377
                      +S Y +++D   + SS T   +E+L+  I + L  N ++     I + +
Sbjct: 129 TKEQLILKAKEWSAYQDQFDEIIITSSLTNLNIEKLLELIVNNLSDNDYQFYDDDILTDQ 188

Query: 378 RHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRL 411
              + + + +R  + + +  E    + ++ E+L  
Sbjct: 189 SDRFMIKEIIRENILLKTGQEVPHSVAVLVEHLEQ 223


>gi|168064687|ref|XP_001784291.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664167|gb|EDQ50897.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 300

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 23/175 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N +  + ++IVT+ P TTR  +        Y + + DT G+    
Sbjct: 5   VALVGKPNAGKSTLLNQIIGQKLSIVTNKPQTTRHRILGICSGPDYQMVLYDTPGVISKQ 64

Query: 282 DIVEKEGIKR-TFLEVENADLILLLKEI-----------NSKKEISFPKNIDFIFIGTKS 329
                E + R       NAD +L++ +               ++     N   + +  K 
Sbjct: 65  VKKLDEMMMRNVRTATLNADCVLIVVDACEQPEEVMSRLTDGQQTLVTDNRPTLLVLNKK 124

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELI----------NKIKSILSNKFKKLPFSIP 374
           DL                G G  E+I          +KIK  L  +    P   P
Sbjct: 125 DLIKPGEIAKKKAWYELNG-GTTEVIAVSAKQGAGVDKIKEWLLGRLPYGPAYYP 178


>gi|283796159|ref|ZP_06345312.1| GTP-binding protein Era [Clostridium sp. M62/1]
 gi|291076378|gb|EFE13742.1| GTP-binding protein Era [Clostridium sp. M62/1]
 gi|295092205|emb|CBK78312.1| GTP-binding protein Era [Clostridium cf. saccharolyticum K10]
          Length = 301

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 73/199 (36%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI +D P TTR+ +      E   +   DT GI +  
Sbjct: 10  VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFLDTPGIHKAK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIG--------- 326
           + + +  +      ++  D+IL L E         +      K +    I          
Sbjct: 70  NKLGEYMVSVAEHTLKEVDVILWLVEPTTFIGAGERHIAEQLKKVKTPVILVINKTDTIK 129

Query: 327 TKSDLYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K D+ +      D          S+   + ++ + + I   L    +       + +  
Sbjct: 130 NKEDILTFIAAYKDICEFAEIIPASALKEKNIDAVKDCIFKYLPEGPQFYDEDTVTDQPM 189

Query: 380 LYHLSQTVRYLEMASLNEK 398
               ++ +R   +  L+++
Sbjct: 190 RQIAAELIREKALRMLDDE 208


>gi|262375525|ref|ZP_06068758.1| GTP-binding protein Era [Acinetobacter lwoffii SH145]
 gi|262309779|gb|EEY90909.1| GTP-binding protein Era [Acinetobacter lwoffii SH145]
          Length = 342

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 202 DISSHISQGKLGEI---IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           D+ S     +  EI    R+G+ + I+G  N GKS+L N +  + ++I +  P TTR  +
Sbjct: 20  DLISQFFSAQGTEIPSDYRSGF-VAIVGRPNVGKSTLMNHILGQKLSITSRKPQTTRHKI 78

Query: 259 TIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEI-----NSKK 312
                 E       DT G+ + +   + K   +     + + +L+L + +      N   
Sbjct: 79  VGIDSREKSQAVFVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVVDAQKWTPNDDL 138

Query: 313 EISFPKN--IDFIFIGTKSDLYSTYTEEYD--------------HLISSFTGEGLEELIN 356
            +   KN  +  I +  K D +    E                   +S+  G  LE L +
Sbjct: 139 VLEKLKNAEMPVILVINKLDTFENKNEALPLIREREKLMNFAEIVPVSALRGANLEHLRD 198

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            I   L  +         + +   +  S+ +R   M  L E +   D+ +   
Sbjct: 199 TIAKYLPFQPPLYSLDQLTDRSERFLASEIIREKIMRQLGE-ELPYDLTVQIE 250


>gi|239501067|ref|ZP_04660377.1| GTP-binding protein Era [Acinetobacter baumannii AB900]
          Length = 342

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 78/210 (37%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +
Sbjct: 42  VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 101

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + K   +     + + +L+L + +        ++   K    ++  I +  K+D + 
Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVIDAHKWTQNDDLVLEKLKNADMPVILVINKADTFG 161

Query: 334 TYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E                   +S+  G  LE L   I+  L  +     F   + +  
Sbjct: 162 DKREILPLIQERAKLMNFAEIIPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITDRSE 221

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M  L E +   D+ +   
Sbjct: 222 RFLASEIIREKIMRQLGE-ELPYDLTVQIE 250


>gi|301167245|emb|CBW26827.1| GTP-binding protein [Bacteriovorax marinus SJ]
          Length = 335

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 27/212 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + +LG  N GKSSL N L   D+++VT+   TTR+ +     ++   + + DT G+ +
Sbjct: 22  IMVAVLGAPNVGKSSLVNYLLGMDLSVVTNKAQTTRNKIHCVFTVDRTEIVLVDTPGLHK 81

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI---------NSKKEISFPKNIDFIFIGTKSD 330
           T+  + K   ++    V+ ADL LLL ++         + K+ +   K      + TK D
Sbjct: 82  TNQELNKRLNEQAREGVDGADLNLLLVDLTRPVLGQLEDFKENMESDKFAKTWVLFTKCD 141

Query: 331 LYSTYTE-----------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               Y E                 E   +IS+  G  +  L   +    +          
Sbjct: 142 RVENYKELPLSLVMDKMQELMPEIEKGIVISTKDGTNMHNLTGLLVDEAAPGPHYYGDGS 201

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
            S+K   +  ++ +R      LN  +   ++ 
Sbjct: 202 VSNKNERFFATEYIREQAFELLNA-ELPYELA 232


>gi|225027089|ref|ZP_03716281.1| hypothetical protein EUBHAL_01345 [Eubacterium hallii DSM 3353]
 gi|224955553|gb|EEG36762.1| hypothetical protein EUBHAL_01345 [Eubacterium hallii DSM 3353]
          Length = 409

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 24/182 (13%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++    GE I  G+     G  NAGKSS+ NA+  +++A+V+D  GTT D ++  ++L  
Sbjct: 3   LNDTPSGERIHIGF----FGRRNAGKSSVVNAVTGQELAVVSDTKGTTTDPVSKAMELLP 58

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---P 317
              V I DT G  +   + E   +++T   +   D+ +L+ +        ++E+      
Sbjct: 59  LGPVMIIDTPGFDDKGHLGELR-VRKTKQILNRTDIAVLVIDATEGIKQCEEELLAIFKE 117

Query: 318 KNIDFIFIGTKSDLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFK 367
           K I ++ +  K D+ S   +               +S+   + + EL  K+  ++    +
Sbjct: 118 KEIPYLLVYNKEDILSEEQKNLLRTEQSEQVNSICVSALEKKHINELKEKLARLVKTDNQ 177

Query: 368 KL 369
           KL
Sbjct: 178 KL 179


>gi|162147936|ref|YP_001602397.1| GTP-binding protein Era [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786513|emb|CAP56095.1| putative GTP-binding protein era homolog [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 305

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 85/203 (41%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  NAGKS+L N +A   ++IV+    TTR  +   L      + + DT G
Sbjct: 12  RCGF-VAIVGAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRVLGILMRGESQILLVDTPG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE--------INSKKEISFPKNIDFIFIGTK 328
           I +    +++  +   +   E+AD+ LLL +        + +  E           +  K
Sbjct: 71  IFQPRRKLDRAMVAAAWTGAEDADITLLLVDARRGLSESVRAIVERLAQSRRRVWLVLNK 130

Query: 329 SDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +DL                   E+ +++S+ +G+G+E+L++ + + L       P    +
Sbjct: 131 TDLVDRQALLPLTAELSALLDVEHVYMVSARSGDGVEDLLSALAASLPEGPYLYPEDDLT 190

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++ VR       +E+
Sbjct: 191 DLPDRLLAAELVREQIFLQTHEE 213


>gi|126699770|ref|YP_001088667.1| putative ATP/GTP-binding protein [Clostridium difficile 630]
 gi|255101290|ref|ZP_05330267.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-63q42]
 gi|255307166|ref|ZP_05351337.1| putative ATP/GTP-binding protein [Clostridium difficile ATCC 43255]
 gi|115251207|emb|CAJ69038.1| putative ATP/GTP-binding protein [Clostridium difficile]
          Length = 402

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 20/168 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  NAGKSS+ NA+  +  AIV+DI GTT D +   +++       + DTAG+ 
Sbjct: 12  VHIGLFGKRNAGKSSIINAITNQSAAIVSDIAGTTTDPVFRPMEILPIGPCVLIDTAGLD 71

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD 330
           +  ++ E   I ++   +E  D+ LL+ +     S++++S       KNI  I I  K D
Sbjct: 72  DVGELGELR-IGKSLDVLEKTDIALLVVDCQIGISQEDLSLIEKFNDKNIPHILILNKID 130

Query: 331 LYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKK 368
                +E  +             SS    G+E L N+I  +L     +
Sbjct: 131 TIKNQSEILNLTKNKVKCPVVSVSSTDKIGIENLKNEIIKVLPKDSTE 178


>gi|255656142|ref|ZP_05401551.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-23m63]
 gi|296450425|ref|ZP_06892181.1| GTP-binding protein [Clostridium difficile NAP08]
 gi|296879452|ref|ZP_06903446.1| GTP-binding protein [Clostridium difficile NAP07]
 gi|296260686|gb|EFH07525.1| GTP-binding protein [Clostridium difficile NAP08]
 gi|296429598|gb|EFH15451.1| GTP-binding protein [Clostridium difficile NAP07]
          Length = 402

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 20/168 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  NAGKSS+ NA+  +  AIV+DI GTT D +   +++       + DTAG+ 
Sbjct: 12  VHIGLFGKRNAGKSSIINAITNQSAAIVSDIAGTTTDPVFRPMEILPIGPCVLIDTAGLD 71

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD 330
           +   + E   I ++   +E  D+ LL+ +     S++++S       KNI  I I  K D
Sbjct: 72  DVGKLGELR-ISKSLDVLEKTDIALLVVDCQIGISQEDLSLIEKFNDKNIPHILILNKID 130

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
                     L     +     +SS    G+E L N+I  +L     +
Sbjct: 131 TIKNQSEILNLAKNKVKCPVVSVSSTDKIGIENLKNEIIRVLPKDGTE 178


>gi|114778238|ref|ZP_01453110.1| GTP-binding protein EngA [Mariprofundus ferrooxydans PV-1]
 gi|114551485|gb|EAU54040.1| GTP-binding protein EngA [Mariprofundus ferrooxydans PV-1]
          Length = 456

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 19/163 (11%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
              I + + G +        I+G  N GKS+LFN L     AIV D PG T D L  +  
Sbjct: 3   EEIIQKKQTGRL----PVAAIVGRPNVGKSTLFNRLIGVRKAIVGDRPGVTVDRLESEFM 58

Query: 264 LEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEI 314
           L    V + DT GI E T DI++     +    +E AD+++   +  S          + 
Sbjct: 59  LGDRHVILVDTGGIGEGTHDIMQPAIDIQVDAALEIADIVIFTVDAQSGATGVDAVIADK 118

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEY------DHLISSFTGEGL 351
              + +  + +  K++  ++ T+ Y         +S+  G+G+
Sbjct: 119 LRRQGMPLLLVVNKAERENSATDFYGLGLGEPLPVSAIHGQGM 161



 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 11/145 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            I ++G  N GKS+L NA   +D  +V++I GTTRD +   L  +   V++ DTAG R+ 
Sbjct: 190 NIAVIGRPNVGKSTLINAWLGRDRMVVSEIAGTTRDAIDSMLPFQDGFVRLVDTAGQRKH 249

Query: 281 D---DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329
               D++E     +       AD+ ++L +             +++  +    I    K 
Sbjct: 250 GRISDVIEFVARVKAVQAFRMADVAVMLLDGAEGIVEQDMRLMQLAQDEGCALIVAVNKL 309

Query: 330 DLYSTYTEEYDHLISSFTGEGLEEL 354
           DL S    +Y     +F   G+ ++
Sbjct: 310 DLLSEQEWKYFAERLNFRMRGMTDI 334


>gi|296269123|ref|YP_003651755.1| GTP-binding proten HflX [Thermobispora bispora DSM 43833]
 gi|296091910|gb|ADG87862.1| GTP-binding proten HflX [Thermobispora bispora DSM 43833]
          Length = 501

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 26/255 (10%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
             + ++     +E +  +     ++S      +     R+   + I G++NAGKSSL N 
Sbjct: 236 ETKIELDRRRIRERMAKLRKQIKEMSVVRQTKRRRRQNRDVPAVAIAGYTNAGKSSLLNR 295

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L    V +   +  T    +      +G +  ++DT G          E  + T  EV +
Sbjct: 296 LTGAGVLVEDALFATLDPTVRRARTPDGRVFTLADTVGFVRHLPHQLVEAFRSTLEEVAD 355

Query: 299 ADLILLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTY-------TEE 338
           ADLIL + + +                EI    +I  I +  K+D+            E 
Sbjct: 356 ADLILHVVDGSHPDPESQIAAVRKVFAEIEGALDIPEIIVINKADIADPVVLARLSAKER 415

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL---YHLSQTVRYLEM--- 392
           +  ++S+ TGEG++ L+  I   L    +++   +P  +  L    H   TV  L+    
Sbjct: 416 HSVVVSARTGEGIDRLLEAIARELPEPDREVRVLVPYERGDLISRAHTEGTVLSLDHTPE 475

Query: 393 ASLNEKDCGLDIIAE 407
            ++       D+ AE
Sbjct: 476 GTILHARVRPDLYAE 490


>gi|223558111|gb|ACM91114.1| putative GTPase [uncultured bacterium Rlip2]
          Length = 171

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++Q   GE +  G    + G  NAGKSSL NAL  +  A+V+D+ GTT D +   ++L G
Sbjct: 1   MNQAARGERVHIG----VFGRRNAGKSSLLNALTGQQAALVSDVAGTTTDPVYQPMELHG 56

Query: 267 YL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323
              V   DTAG  +T  +     ++RT      AD+ L+L +    +  +        
Sbjct: 57  AGAVVFIDTAGFDDTGMLGGMR-VERTRSAAARADIALVLFDEEDVEGEAGANGAFLW 113


>gi|169795097|ref|YP_001712890.1| GTP-binding protein Era [Acinetobacter baumannii AYE]
 gi|213158241|ref|YP_002320292.1| GTP-binding protein Era [Acinetobacter baumannii AB0057]
 gi|301345823|ref|ZP_07226564.1| GTP-binding protein Era [Acinetobacter baumannii AB056]
 gi|301594765|ref|ZP_07239773.1| GTP-binding protein Era [Acinetobacter baumannii AB059]
 gi|169148024|emb|CAM85887.1| GTP-binding protein,16S rRNA-binding,ribosome-associated GTPase
           [Acinetobacter baumannii AYE]
 gi|193078015|gb|ABO12935.2| GTP-binding protein16S rRNA-binding,ribosome-associated GTPase
           [Acinetobacter baumannii ATCC 17978]
 gi|213057401|gb|ACJ42303.1| GTP-binding protein Era [Acinetobacter baumannii AB0057]
          Length = 342

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 78/210 (37%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +
Sbjct: 42  VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 101

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + K   +     + + +L+L + +        ++   K    ++  I +  K+D + 
Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVIDAHKWTQNDDLVLEKLKNADMPVILVINKADTFG 161

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E    +               S+  G  LE L   I+  L  +     F   + +  
Sbjct: 162 DKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITDRSE 221

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M  L E +   D+ +   
Sbjct: 222 RFLASEIIREKIMRQLGE-ELPYDLTVQIE 250


>gi|167767681|ref|ZP_02439734.1| hypothetical protein CLOSS21_02216 [Clostridium sp. SS2/1]
 gi|167710698|gb|EDS21277.1| hypothetical protein CLOSS21_02216 [Clostridium sp. SS2/1]
 gi|291560815|emb|CBL39615.1| GTP-binding protein Era [butyrate-producing bacterium SSC/2]
          Length = 301

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G  N GKS+L N L  + +AI +  P TTR+ +      E   +   DT GI +  
Sbjct: 10  VTFIGRPNVGKSTLMNRLIGQKIAITSSKPQTTRNRIQTVYTDERGQIIFLDTPGINKAK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSDLYS 333
           + +    ++     +   D++L L E ++          E         I +  K D   
Sbjct: 70  NKLGNYMLQVAERTLNEVDVVLWLVEPSTFIGGGEKYIIEQLSKIKTPIILVINKIDTVE 129

Query: 334 T--YTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                E  D             +S+  G+  +++I+ I   L            + +   
Sbjct: 130 EKDILEAIDTYKDVCEFAEIIPVSALKGKNTDDVIDSIYKYLDEGPMYFDEDTITDQPER 189

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++ +R   +  L+++
Sbjct: 190 QICAELIREKALRLLSQE 207


>gi|225027254|ref|ZP_03716446.1| hypothetical protein EUBHAL_01510 [Eubacterium hallii DSM 3353]
 gi|224955407|gb|EEG36616.1| hypothetical protein EUBHAL_01510 [Eubacterium hallii DSM 3353]
          Length = 301

 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 81/208 (38%), Gaps = 22/208 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +    ++G+ + I+G  N GKS+L N L  + +AI +    TTR+ +      E   +  
Sbjct: 1   MSRCFKSGF-VTIIGRPNVGKSTLMNQLIGQKIAITSSKAQTTRNRIQTVYTSEEGQIVF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFI 323
            DT GI +  + +    +      +   DLIL L E    I   ++    K         
Sbjct: 60  LDTPGINKAKNKLGDYMLMAAERTLNEVDLILWLVEPTTFIGGGEQYIIEKLQNVKTPIF 119

Query: 324 FIGTKSDLYS---------TYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K+D+ +          Y ++ +      +S+  G   ++L++ I   L        
Sbjct: 120 LVINKTDVATEEEILKAIVAYKDQCNFAEIIPVSALEGNNTDDLVHSIFKYLPEGPMYYD 179

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               + +     +++ VR   +  L+++
Sbjct: 180 EDTITDQPERQIVAELVREKALRLLSQE 207


>gi|294784965|ref|ZP_06750253.1| GTP-binding protein Era [Fusobacterium sp. 3_1_27]
 gi|294486679|gb|EFG34041.1| GTP-binding protein Era [Fusobacterium sp. 3_1_27]
          Length = 298

 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 24/191 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L    VAIV+D  GTTRD +   L+ +       DT GI +  
Sbjct: 6   IAVVGRPNVGKSTLINKLVSGKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----------KNIDFIFIGTKSDL 331
            ++ +         +++ D+IL L + +                  K    I +  K DL
Sbjct: 66  HLLGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENTKKKPKILLVNKVDL 125

Query: 332 YSTYTEEY--------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            S   +E                   S     G+ +L+  +   L    K  P  + +  
Sbjct: 126 ISDEQKEEKLKEIKEKLGEFNKIIFASGMYSFGISQLLEALDPYLEEGVKYYPDDMYTDM 185

Query: 378 RHLYHLSQTVR 388
                +++ VR
Sbjct: 186 STYRIITEIVR 196


>gi|162447802|ref|YP_001620934.1| GTP-binding protein [Acholeplasma laidlawii PG-8A]
 gi|161985909|gb|ABX81558.1| GTP-binding protein [Acholeplasma laidlawii PG-8A]
          Length = 295

 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + +AI +    TTR  +T  L+         DT G+ +  
Sbjct: 8   IAIIGKPNVGKSTLINALIGEKIAITSPKVQTTRFRITGILNEGENQFVFIDTPGMHKPY 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--EISFPK----NIDFIFIGTKSDLYSTY 335
             + K   K     + +AD I+ + +   ++  EI   +    ++  I +  K D     
Sbjct: 68  HGLGKSMDKSATDALMDADAIMWVVDQTYRRTDEIILERIKHSHLPVILVINKIDTLENK 127

Query: 336 TE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            E              ++   IS+     L +L   +   L       P    + +    
Sbjct: 128 AEIDKIIISFLKVHEFKHIVPISAKDQTHLTQLKETLVEYLVEGPHYYPDDYVTDQTDES 187

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 188 RMTEIIR 194


>gi|154686789|ref|YP_001421950.1| GTP-binding protein Era [Bacillus amyloliquefaciens FZB42]
 gi|154352640|gb|ABS74719.1| Era [Bacillus amyloliquefaciens FZB42]
          Length = 301

 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 22/198 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +   L         
Sbjct: 2   TNESFKSGF-VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIF 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISFPK----NIDFI 323
            DT GI +    +    +K     ++  DL+L +           E    K    +    
Sbjct: 61  IDTPGIHKPKHKLGDFMMKVAQNTLKEVDLVLFMINAEEGYGKGDEFIIEKLGQTSTPVF 120

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            I  K D         L   Y   Y       IS+  G  +E L+ +I++ L    +  P
Sbjct: 121 LIVNKIDKIHPDQLLLLIDEYRTRYPFKEIVPISALEGNNVETLLAQIEAYLPEGPQFYP 180

Query: 371 FSIPSHKRHLYHLSQTVR 388
               +     + +S+ +R
Sbjct: 181 SDQVTDHPERFIISELIR 198


>gi|254975750|ref|ZP_05272222.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-66c26]
 gi|255093137|ref|ZP_05322615.1| putative ATP/GTP-binding protein [Clostridium difficile CIP 107932]
 gi|255314879|ref|ZP_05356462.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-76w55]
 gi|255517553|ref|ZP_05385229.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-97b34]
 gi|255650664|ref|ZP_05397566.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-37x79]
 gi|260683753|ref|YP_003215038.1| putative ATP/GTP-binding protein [Clostridium difficile CD196]
 gi|260687413|ref|YP_003218547.1| putative ATP/GTP-binding protein [Clostridium difficile R20291]
 gi|306520592|ref|ZP_07406939.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-32g58]
 gi|260209916|emb|CBA63870.1| putative ATP/GTP-binding protein [Clostridium difficile CD196]
 gi|260213430|emb|CBE05089.1| putative ATP/GTP-binding protein [Clostridium difficile R20291]
          Length = 402

 Score = 91.1 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 20/168 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  NAGKSS+ NA+  +  AIV+DI GTT D +   +++       + DTAG+ 
Sbjct: 12  VHIGLFGKRNAGKSSIINAITNQSAAIVSDIAGTTTDPVFRPMEILPIGPCVLIDTAGLD 71

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSD 330
           +  ++ E   I ++   +E  D+ LL+ +     S++++S       KNI  I I  K D
Sbjct: 72  DVGELGELR-IGKSLDVLEKTDIALLVVDCQIGISQEDLSLIEKFNDKNIPHILILNKID 130

Query: 331 LYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKK 368
                +E  +             SS    G+E L N+I  +L     +
Sbjct: 131 TIKNQSEILNLTKNKVKCPVVSVSSTDKIGIENLKNEIIKVLPKDSTE 178


>gi|254252844|ref|ZP_04946162.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158]
 gi|124895453|gb|EAY69333.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158]
          Length = 299

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 71/191 (37%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    ++       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTIDDAQFVFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D+IL + E       + K     P  +  + I  K D  S 
Sbjct: 74  STALNRSLNRAVTSTLTSVDVILFVIEAGRFGPDDQKVLDLIPPGMPTLLITNKIDRVSD 133

Query: 335 YTEEYDHLISSFTGEGLEELI-------NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
            T  Y  +          EL+       + IK +L      LP   P +        ++ 
Sbjct: 134 KTTLYPFMQQMSALREFAELVPLSAKQPDDIKRLLDTIKPYLPEGEPIYGED-ELTDRSS 192

Query: 388 RYLEMASLNEK 398
           R+L    L EK
Sbjct: 193 RFLAAEILREK 203


>gi|332851054|ref|ZP_08433163.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6013150]
 gi|332869697|ref|ZP_08438885.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6013113]
 gi|332730218|gb|EGJ61543.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6013150]
 gi|332732599|gb|EGJ63832.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6013113]
          Length = 340

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 78/210 (37%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +
Sbjct: 40  VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 99

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + K   +     + + +L+L + +        ++   K    ++  I +  K+D + 
Sbjct: 100 VRAINKMMNRAAHSALRDVNLVLFVIDAHKWTQNDDLVLEKLKNADMPVILVINKADTFG 159

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E    +               S+  G  LE L   I+  L  +     F   + +  
Sbjct: 160 DKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITDRSE 219

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M  L E +   D+ +   
Sbjct: 220 RFLASEIIREKIMRQLGE-ELPYDLTVQIE 248


>gi|310828430|ref|YP_003960787.1| hypothetical protein ELI_2843 [Eubacterium limosum KIST612]
 gi|308740164|gb|ADO37824.1| hypothetical protein ELI_2843 [Eubacterium limosum KIST612]
          Length = 304

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 73/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N++  + + I  + P TTR+ +          +   DT G+ +  
Sbjct: 16  ISIIGRPNVGKSTLLNSIMGEKLVITANKPQTTRNAIRCIHTDADSQMVFIDTPGMHKPK 75

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD--- 330
           + +    +K     + + D++L L E   +         +         + I  K D   
Sbjct: 76  NKLGAFMLKSAEDTISDVDVVLFLVEPEDRIGPGDQYILDKLAGSRTPVLLIINKIDTVP 135

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L  T     D+         S++ G+G++EL+  IK  L       P  +   +   
Sbjct: 136 KEELLKTIAAYQDYTFLDSIIPVSAWNGDGVQELLAAIKKHLEPGPMYFPPDMVVDQSER 195

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 196 FIVGELIR 203


>gi|227513295|ref|ZP_03943344.1| GTP-binding protein Era [Lactobacillus buchneri ATCC 11577]
 gi|227083496|gb|EEI18808.1| GTP-binding protein Era [Lactobacillus buchneri ATCC 11577]
          Length = 300

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 73/194 (37%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + I+G  N GKS+  N +  + +AI++D   TTR+ +      +   V   DT 
Sbjct: 6   YRSGF-VAIVGRPNVGKSTFLNRVVAQKIAIMSDKAQTTRNKIQGVYTTDEAQVVFIDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGT 327
           GI +  + +    +      ++  D +L +     ++       I   K+       +  
Sbjct: 65  GIHKPQNKLGDFMMDSALSALKEVDAVLFMVNATERRGAGDNFIIDRLKDVHKPIYLLIN 124

Query: 328 KSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D         +   Y           IS+  G  + EL+  +   L N  +  P    
Sbjct: 125 KIDEITPDDVMAIIEQYKNALSFKEVFPISALQGNNVPELLTSLIKELPNGPQYYPKDQV 184

Query: 375 SHKRHLYHLSQTVR 388
           +     + +S+ +R
Sbjct: 185 TDHPERFVISELIR 198


>gi|290580024|ref|YP_003484416.1| GTP-binding protein [Streptococcus mutans NN2025]
 gi|254996923|dbj|BAH87524.1| GTP-binding protein [Streptococcus mutans NN2025]
          Length = 299

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY- 332
             +    ++  +  +   D +L +   + K+        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDNMIIERLKAAKVPVILVINKIDKVH 127

Query: 333 -STYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                E+ D             IS+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLEQIDDFRNQMDFQEIVPISALQGNNVSHLVDLLVDHLEEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|85057390|ref|YP_456306.1| GTP-binding protein Era [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789495|gb|ABC65227.1| GTP-binding protein Era [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 295

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 90/244 (36%), Gaps = 33/244 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKS+L NAL ++ VAI +  P TTR+ +              DT GI +  
Sbjct: 12  IAILGRPNVGKSTLLNALTQQKVAITSAKPQTTRNKIIGICHDSNAQYIFVDTPGINQYK 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTY 335
            ++ ++     F  +++ DLIL L +           +I F        +  K D   + 
Sbjct: 72  HLLNQKMNNIVFQSIKDVDLILFLTDSFYHPKEEDLLKIIFQTKKTVFLVINKIDSLKSK 131

Query: 336 TE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           ++              +    +S+   +    L   I   +       P  + + ++   
Sbjct: 132 SQIDAIILSYLNHFSFQTVIPLSAIKAKNTTFLKENIYQNIKPGVAYYPKDMITDQKKEI 191

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE-----QLLDIIFSKF 436
            +++ +R   +  ++E+      +          L +I G + VE     Q+L       
Sbjct: 192 WIAEMIREKVLYYVHEEIPHASAVIIEKMEQKEHLLEIWGLILVERSSQKQIL------- 244

Query: 437 CIGK 440
            IGK
Sbjct: 245 -IGK 247


>gi|85860146|ref|YP_462348.1| GTP-binding protein [Syntrophus aciditrophicus SB]
 gi|123738843|sp|Q2LVR8|ERA_SYNAS RecName: Full=GTPase Era
 gi|85723237|gb|ABC78180.1| GTP-binding protein [Syntrophus aciditrophicus SB]
          Length = 306

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 77/188 (40%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +  + +AI+T  P TTR+ +    + +       DT GI    
Sbjct: 18  IGIIGRPNVGKSTLLNGILGEKLAIITHKPQTTRNRIMGIRNADNAQFIFVDTPGIHSAS 77

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTKSDLYS 333
             + +  ++       ++D++LL+ E       +++   +           I  K DL  
Sbjct: 78  TPLNRLMVRTATETFTDSDILLLVVEAGQAVHPEDLPIIESLKESGTISFLILNKIDLIR 137

Query: 334 T-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                         ++      IS+ TGEG+  L++++   L    +  P  + + +   
Sbjct: 138 KEQLLPLMDAYRNLHSFAELIPISALTGEGIPLLLDELWKYLPEGPQYFPDDMMTDQSER 197

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 198 FLAAEIIR 205


>gi|78065719|ref|YP_368488.1| GTP-binding protein Era [Burkholderia sp. 383]
 gi|77966464|gb|ABB07844.1| GTP-binding protein Era [Burkholderia sp. 383]
          Length = 299

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T     +       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D+IL + E       + K     P  +  + I  K D  + 
Sbjct: 74  STALNRSLNRAVTSTLTSVDVILFVIEAGRFGPDDQKVLDLIPPGMPTLLIANKIDRVND 133

Query: 335 YTEEYDHLISSFTGEGLEELI-------NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
               +  +    T     EL+         IK +L      LP   P +        ++ 
Sbjct: 134 KASLFPFMQQMSTLREFTELVPLSAQRPEDIKRLLDTIKPYLPEGEPIYGED-ELTDRSS 192

Query: 388 RYLEMASLNEK 398
           R+L    L EK
Sbjct: 193 RFLAAEILREK 203


>gi|319404019|emb|CBI77607.1| GTP-binding protein Era [Bartonella rochalimae ATCC BAA-1498]
          Length = 300

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 89/203 (43%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++   +  +   + + DT G
Sbjct: 8   RSGF-VALIGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIYDKTQIILIDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE--------INSKKEISFPKNIDFIFIGTK 328
           +      +E+  +   +   +NAD++L+L +        +++  +I      D I +  K
Sbjct: 67  VFRPHKRLERAMVSAAWGGAKNADILLVLIDAQSGFSDEVDAMLDILKSIEQDKILVLNK 126

Query: 329 SD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D         L +  +E  +     +IS+  G G ++L++ + +I+       P    S
Sbjct: 127 IDTVVKSSLLALTAKVSERVNFLQTFMISALNGSGCKDLLHYLSTIMQEGPWYYPEDQIS 186

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+++
Sbjct: 187 DMPMRQLAAEITREKLFLRLHQE 209


>gi|10177528|dbj|BAB10923.1| GTP-binding protein-like [Arabidopsis thaliana]
          Length = 353

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 24/191 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  + ++IVTD P TTR  +        Y + + DT G+ E  
Sbjct: 58  VAVVGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTPGVIEKK 117

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI----NSKKEI------SFPKNIDFIFIGTKSD 330
              ++   +K       NAD +++L +      + +E+         K    + +  K D
Sbjct: 118 MHRLDTMMMKNVRDAAINADCVVILVDACKTPTNIEEVLKEGLGDLEKKPPMLLVMNKKD 177

Query: 331 L------------YSTYTE-EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           L            Y  +T+ +    +S+  G G+E++   I S L       P  I S  
Sbjct: 178 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGIEDVKEWILSKLPFGPPYYPKDIVSEH 237

Query: 378 RHLYHLSQTVR 388
              + +S+ VR
Sbjct: 238 PERFFVSEIVR 248


>gi|146299638|ref|YP_001194229.1| GTP-binding protein Era [Flavobacterium johnsoniae UW101]
 gi|146154056|gb|ABQ04910.1| GTP-binding protein Era [Flavobacterium johnsoniae UW101]
          Length = 295

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 21/208 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +  
Sbjct: 10  VNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQIVLSDTPGIIKPA 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDL--- 331
             +++  +       E+AD+++ + EI     K E  F K     I  + +  K D    
Sbjct: 70  YEMQESMMNFVKSAFEDADILVYMVEIGEQNLKDEDFFKKIFYAKIPVLLLLNKIDNSNQ 129

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                                IS+     + E+  +I  +L       P    + K   +
Sbjct: 130 EQLEEQVAFWKEKVPNAEIFPISALQNFNVPEVFERIIQLLPESPAYYPKDQLTDKPERF 189

Query: 382 HLSQTVRYLEMAS-LNEKDCGLDIIAEN 408
            +++T+R   + +   E    ++I+ E 
Sbjct: 190 FVNETIREKILLNYAKEIPYAVEIVTEE 217


>gi|328554264|gb|AEB24756.1| GTPase Era [Bacillus amyloliquefaciens TA208]
 gi|328912661|gb|AEB64257.1| GTP-binding protein [Bacillus amyloliquefaciens LL3]
          Length = 301

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 22/198 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +   L         
Sbjct: 2   TNESFKSGF-VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIF 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISFPK----NIDFI 323
            DT GI +    +    +K     ++  DL+L +           E    K    +    
Sbjct: 61  IDTPGIHKPKHKLGDFMMKVAQNTLKEVDLVLFMINAEEGYGKGDEFIIEKLGQTSTPVF 120

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            I  K D         L   Y   Y       IS+  G  +E L+ +I++ L    +  P
Sbjct: 121 LIVNKIDKIHPDQLLLLIDEYRTRYPFKEIVPISALEGNNVETLLAQIEAYLPEGPQFYP 180

Query: 371 FSIPSHKRHLYHLSQTVR 388
               +     + +S+ +R
Sbjct: 181 SDQVTDHPERFIISELIR 198


>gi|293609825|ref|ZP_06692127.1| GTP-binding protein,16S rRNA-binding [Acinetobacter sp. SH024]
 gi|292828277|gb|EFF86640.1| GTP-binding protein,16S rRNA-binding [Acinetobacter sp. SH024]
          Length = 342

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +
Sbjct: 42  VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 101

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKN--IDFIFIGTKSDLYS 333
              + K   +     + + +L+L + +      N    +   KN  +  I +  K+D + 
Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVIDAYKWTQNDDLVLEKLKNAEMPVILVINKADTFE 161

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E    +               S+  G  LE L   I+  L  +     F   + +  
Sbjct: 162 DKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITDRSE 221

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M  L E +   D+ +   
Sbjct: 222 RFLASEIIREKIMRQLGE-ELPYDLTVQIE 250


>gi|317128319|ref|YP_004094601.1| GTP-binding protein Era [Bacillus cellulosilyticus DSM 2522]
 gi|315473267|gb|ADU29870.1| GTP-binding protein Era [Bacillus cellulosilyticus DSM 2522]
          Length = 298

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 74/188 (39%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  + +AI++D   TTR+ +      +   V   DT GI +  
Sbjct: 8   VALIGRPNVGKSTLLNEVLGQKIAIMSDKAQTTRNRIQGVYTEDRGQVIFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSD--- 330
             +    +K     ++  D IL L +    +       +   K+       I  K D   
Sbjct: 68  HRLGDFMMKIAQTTLKEVDAILFLVDAKEGRGKGDEFIMEKLKHVTTPIFLIVNKIDEVH 127

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 L   Y + ++      IS+  G  +E L++++   L    +     I +     
Sbjct: 128 PDELFLLIDDYRKRFEFTEVIPISALYGNNVETLLDQVFKYLDEGPQYYSEDIVTDHPER 187

Query: 381 YHLSQTVR 388
           + +++ +R
Sbjct: 188 FLMAEMIR 195


>gi|258654174|ref|YP_003203330.1| small GTP-binding protein [Nakamurella multipartita DSM 44233]
 gi|258557399|gb|ACV80341.1| small GTP-binding protein [Nakamurella multipartita DSM 44233]
          Length = 483

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 74/190 (38%), Gaps = 26/190 (13%)

Query: 204 SSHISQGKLGEIIRNGY-------KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            S  +  + G    +G+        + ++G  N GKS+L N L  +  A+V D+PG TRD
Sbjct: 24  ESEFTGWEDGSAEDDGFDQGGPAPTLAVVGRPNVGKSTLVNRLIGRREAVVQDVPGVTRD 83

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-------- 308
            ++ D    G    + DT G       ++ E   +    ++ +D +L++ +         
Sbjct: 84  RVSHDALWRGRRFTVVDTGGWDPMASGLQAEVTAQAERAMQTSDAVLVVVDASVGATETE 143

Query: 309 NSKKEISFPKNIDFIFIGTK----------SDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           ++  ++        I    K          + L+S    E    +S   G G  +L++ +
Sbjct: 144 DAIAKVLRRSKRPVILAVNKVDDERAEADAAALWSLGLGE-PIAVSGLHGRGSGDLLDAV 202

Query: 359 KSILSNKFKK 368
              L    ++
Sbjct: 203 LEALPTAPEE 212



 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 13/150 (8%)

Query: 198 FLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L + +   +       +   G   ++ ++G  N GKSSL N L  +  ++V  + GTT 
Sbjct: 197 DLLDAVLEALPTAPEEFVGSGGGPRRVALIGRPNVGKSSLLNKLTGESRSVVHAVAGTTV 256

Query: 256 DVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK- 311
           D +   ++++G L +  DTAG+R        +E     RT   +E+A++ + L + ++  
Sbjct: 257 DPVDSLVEIDGQLWRFVDTAGLRRRVNQAKGMEYYASLRTQTALESAEVAIALIDSSTPI 316

Query: 312 -----KEISFPKNIDFIFI--GTKSDLYST 334
                + IS   +     +    K+DL   
Sbjct: 317 TEQDQRVISMVIDSGRALVIALNKADLVDA 346


>gi|119897934|ref|YP_933147.1| GTP-binding protein Era [Azoarcus sp. BH72]
 gi|119670347|emb|CAL94260.1| probable GTP-binding protein [Azoarcus sp. BH72]
          Length = 304

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 10/135 (7%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           I   +   K G   R G+ + I+G  N GKS+L N L  + ++IV+    TTR  +T  L
Sbjct: 3   IEEAVPSAKPG--FRTGF-VAIVGRPNVGKSTLLNRLIGQKISIVSSKAQTTRHRVTGIL 59

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLKEI-----NSKKEIS- 315
             EG      DT G +          + RT    + + DL+  + E      + +K +  
Sbjct: 60  TNEGAQFVFVDTPGFQTQHRNALNRSMNRTVSQVLGDVDLVFFVIEAGRFGEDDRKVLEV 119

Query: 316 FPKNIDFIFIGTKSD 330
            P +   + +  K D
Sbjct: 120 IPADAQVVLVINKVD 134


>gi|300778405|ref|ZP_07088263.1| GTP-binding protein Era [Chryseobacterium gleum ATCC 35910]
 gi|300503915|gb|EFK35055.1| GTP-binding protein Era [Chryseobacterium gleum ATCC 35910]
          Length = 291

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 84/207 (40%), Gaps = 21/207 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L N L  + +AIVT    TTR  +    + +   +  SDT G+ +  
Sbjct: 7   VNIVGKPNAGKSTLLNQLMGEKLAIVTQKAQTTRHRIFGIYNEDDLQIVFSDTPGVLDPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFI--FIGTKSDLYST 334
             ++++ +      +++AD+ L + ++  K E     I     I      +  K D    
Sbjct: 67  YGLQEKMMDFVKDSLQDADVFLFIVDVTDKAEPSEFLIEKLNKIPVPVLLLLNKVDQTDQ 126

Query: 335 YTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
              E                 IS+      E ++ KIKS+L            + K   +
Sbjct: 127 AGLEKLVEEWHNRIPKAEILPISALNAFNTEVILPKIKSLLPENPPYYDKDQFTDKPERF 186

Query: 382 HLSQTVRY-LEMASLNEKDCGLDIIAE 407
            +++T+R  + +    E    ++++ E
Sbjct: 187 FVNETIREKILLNYDKEIPYSVEVVTE 213


>gi|116494998|ref|YP_806732.1| GTP-binding protein Era [Lactobacillus casei ATCC 334]
 gi|122263585|sp|Q038T2|ERA_LACC3 RecName: Full=GTPase Era
 gi|116105148|gb|ABJ70290.1| GTPase [Lactobacillus casei ATCC 334]
          Length = 300

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 64/188 (34%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +  + +AI++    TTR+ +          +   DT GI +  
Sbjct: 9   VAIIGRPNVGKSTFMNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
           + ++    K     +   D IL + E + +K                    I  K DL  
Sbjct: 69  NELDTYMDKAALSTLNQVDAILFMVEADEEKGPGDGYIMRQLAEVKKPVYLIINKIDLVK 128

Query: 334 -------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                         Y       IS+     ++EL+  +   L    +  P    +     
Sbjct: 129 PDDLLPLIESYQHDYAFAQVFPISATMENNVDELLTALTDALPVGPQYYPEDQLTDHPEY 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGELIR 196


>gi|312879371|ref|ZP_07739171.1| small GTP-binding protein [Aminomonas paucivorans DSM 12260]
 gi|310782662|gb|EFQ23060.1| small GTP-binding protein [Aminomonas paucivorans DSM 12260]
          Length = 414

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 15/161 (9%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           +     +V+ G  NAGKSSL N +   + +IV+  PGTT D +   +++     V ++DT
Sbjct: 6   LAEQISVVVYGRRNAGKSSLVNRMLGMEASIVSPRPGTTTDPVVRSVEMGALGPVAVTDT 65

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISF-----PKNIDFIFIG 326
           AG  + +D +     +R+   +E AD++L +   + +    EI+       ++   + + 
Sbjct: 66  AGYDDDEDELGTLRTERSRKRLETADIVLFVTPGDEEPTSDEIALTEELHRRDKPVLVVL 125

Query: 327 TKSDLYSTYTEE------YDHLISSFTGEGLEELINKIKSI 361
           T+SD      +           + + TG G+E+L   ++  
Sbjct: 126 TRSDREIAEAKRRFAPGFRKIAVDNLTGRGIEDLNAALRQF 166


>gi|312890130|ref|ZP_07749673.1| GTP-binding protein Era [Mucilaginibacter paludis DSM 18603]
 gi|311297407|gb|EFQ74533.1| GTP-binding protein Era [Mucilaginibacter paludis DSM 18603]
          Length = 292

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 21/205 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  NAGKS+L NAL  + ++I+T    TTR  +   ++ E Y +  SDT G
Sbjct: 4   RAGF-VSIIGKPNAGKSTLMNALVGEKMSIITPKAQTTRHRILGIVNEEDYQIVFSDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------DFIFIGTKSD 330
           I +    +++  + +    + +AD++LL+ +IN K + S   +         + I  K D
Sbjct: 63  IIKPHYALQETMMHQVSGSLVDADMVLLVTDINEKYDESDVMDKLKGSTAPLVVIINKID 122

Query: 331 L-------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                           T        IS+     ++ ++N +   L            + +
Sbjct: 123 KSDEETVKQKIAYWEETLKPTAVFAISALLNHNVQAIMNLVLDSLPEHPPYYEKDFLTDR 182

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGL 402
              +  S+ +R  ++  + EK+   
Sbjct: 183 NDRFFASEIIRE-KIFKIYEKEIPY 206


>gi|256827190|ref|YP_003151149.1| GTP-binding protein Era [Cryptobacterium curtum DSM 15641]
 gi|256583333|gb|ACU94467.1| GTP-binding protein Era [Cryptobacterium curtum DSM 15641]
          Length = 315

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 21/177 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L NA+  K VAI +D   TTR         + + + + DT GI +  
Sbjct: 25  VTLVGRPNAGKSTLINAIMGKKVAITSDTAQTTRHRFRAVKTTDTFQLVLIDTPGIHKPH 84

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           D + +E  +     ++  D++  L +              I  P     + + TK DL  
Sbjct: 85  DALGQELNESAIQALDGIDVVAFLVDGTKPVGTGDEWVSRIIAPIKAKKVLVITKIDLID 144

Query: 334 TYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
             T              +    +S+ +GEG+E  +NK+ S+L    +  P  + + +
Sbjct: 145 QDTIDAQMEAASALADWDAKIQLSAVSGEGVEFFLNKMASLLPVGPRWFPADMETDQ 201


>gi|209542554|ref|YP_002274783.1| GTP-binding protein Era [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530231|gb|ACI50168.1| GTP-binding protein Era [Gluconacetobacter diazotrophicus PAl 5]
          Length = 297

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 85/203 (41%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  NAGKS+L N +A   ++IV+    TTR  +   L      + + DT G
Sbjct: 4   RCGF-VAIVGAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRVLGILMRGESQILLVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE--------INSKKEISFPKNIDFIFIGTK 328
           I +    +++  +   +   E+AD+ LLL +        + +  E           +  K
Sbjct: 63  IFQPRRKLDRAMVAAAWTGAEDADITLLLVDARRGLSESVRAIVERLAQSRRRVWLVLNK 122

Query: 329 SDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +DL                   E+ +++S+ +G+G+E+L++ + + L       P    +
Sbjct: 123 TDLVDRQALLPLTAELSALLDVEHVYMVSARSGDGVEDLLSALAASLPEGPYLYPEDDLT 182

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++ VR       +E+
Sbjct: 183 DLPDRLLAAELVREQIFLQTHEE 205


>gi|325123051|gb|ADY82574.1| GTP-binding protein Era [Acinetobacter calcoaceticus PHEA-2]
          Length = 340

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +
Sbjct: 40  VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 99

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKN--IDFIFIGTKSDLYS 333
              + K   +     + + +L+L + +      N    +   KN  +  I +  K+D + 
Sbjct: 100 VRAINKMMNRAAHSALRDVNLVLFVIDAYKWTQNDDLVLEKLKNAEMPVILVINKADTFE 159

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E    +               S+  G  LE L   I+  L  +     F   + +  
Sbjct: 160 DKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITDRSE 219

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M  L E +   D+ +   
Sbjct: 220 RFLASEIIREKIMRQLGE-ELPYDLTVQIE 248


>gi|319898693|ref|YP_004158786.1| GTP-binding protein Era [Bartonella clarridgeiae 73]
 gi|319402657|emb|CBI76203.1| GTP-binding protein Era [Bartonella clarridgeiae 73]
          Length = 300

 Score = 90.7 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 87/203 (42%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    ++IVT    TTR ++   +  +   + + DT G
Sbjct: 8   RSGF-VAVIGVPNAGKSTLVNQLVGTKISIVTHKVQTTRTLVRGIVIYDKTQIILIDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE--------INSKKEISFPKNIDFIFIGTK 328
           +      +E+  +   +   +NAD++L+L +        +++  +I      D I +  K
Sbjct: 67  VFRPHKRLERAMVSAAWGGAKNADILLVLIDVQSGLSDEVDAMLDILKSVEQDKILVLNK 126

Query: 329 SD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D         L +   E  +     +IS+  G G ++L+  + +I+       P    S
Sbjct: 127 IDTVAKSSLLALTAKVNERVNFLQTFMISALNGSGCKDLLYYLSTIMQEGPWYYPEDQIS 186

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+++
Sbjct: 187 DMPMRQLAAEITREKLFLRLHQE 209


>gi|24379997|ref|NP_721952.1| GTP-binding protein Era [Streptococcus mutans UA159]
 gi|26006953|sp|P37214|ERA_STRMU RecName: Full=GTPase Era; AltName: Full=SGP
 gi|24377985|gb|AAN59258.1|AE014993_2 GTP-binding protein; Era-like protein [Streptococcus mutans UA159]
          Length = 299

 Score = 90.7 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   + K+        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDNMIIERLKAAKVPVILVINKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L     +  + +        S+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PNQLLEQIDDFRNQMDFQEIVPISALQGNNVSHLVDLLVDHLEEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|302342153|ref|YP_003806682.1| GTP-binding protein Era [Desulfarculus baarsii DSM 2075]
 gi|301638766|gb|ADK84088.1| GTP-binding protein Era [Desulfarculus baarsii DSM 2075]
          Length = 296

 Score = 90.7 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 75/199 (37%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+  N +    +AI +D P TTR  L    + E   +   DT G+ +  
Sbjct: 6   VAIVGPPNAGKSTFLNHVLGFKLAITSDKPQTTRHRLLGVCNREESQIVFLDTPGLHKPM 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
             + K  ++     +++ + +L + E ++K          +        +    K DL  
Sbjct: 66  RALNKLMVRTAMAALQDVEAVLFMVEASAKGLAEGQRVAGMLAEAKKPVVVALNKIDLVR 125

Query: 334 TYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                                  +S+  G+G   ++ ++  +L       P  + +    
Sbjct: 126 DKAALLPMLERVAGWAEWAAIVPLSAAKGDGAAAVLRELAGLLPQGPAIFPEDMITDLSE 185

Query: 380 LYHLSQTVRYLEMASLNEK 398
            + +S+ +R    A  N++
Sbjct: 186 RFLVSELIREKVFALTNQE 204


>gi|282860195|ref|ZP_06269269.1| GTP-binding protein Era [Prevotella bivia JCVIHMP010]
 gi|282587016|gb|EFB92247.1| GTP-binding protein Era [Prevotella bivia JCVIHMP010]
          Length = 293

 Score = 90.7 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 73/163 (44%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTDDAQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--ISFPKN-----IDFIFIGTKSDL--- 331
             +++  ++ +   + +AD++L + ++  K E  + F +      I  I +  K D    
Sbjct: 67  YKMQEMMLQFSESALADADVLLYVTDVVEKPEKNMDFLEKVAKMQIPVILLINKIDESEQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                     +S         IS+    G++ L+ +I  +L  
Sbjct: 127 QKLGELVEKWHSLLPNAEILPISAQNKFGIDILLKRIYELLPE 169


>gi|167759928|ref|ZP_02432055.1| hypothetical protein CLOSCI_02292 [Clostridium scindens ATCC 35704]
 gi|167662547|gb|EDS06677.1| hypothetical protein CLOSCI_02292 [Clostridium scindens ATCC 35704]
          Length = 406

 Score = 90.7 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 20/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSS+ NAL  + +AIV+D+ GTT D +   ++L     V + DT G
Sbjct: 10  ERVHIGIFGRRNAGKSSIINALTGQSLAIVSDVKGTTTDPVLKAMELLPLGPVVMIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTK 328
           + +  ++     I++ +  +   D+ +L+ +  +   ++++        K I ++ +  K
Sbjct: 70  LDDEGELGALR-IQKAYQVLNKTDIAVLVVDGTAGMTREDLLILDRIKDKKIPYVIVMNK 128

Query: 329 SDLY----------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           +DL           S   +E+   +S+     + EL   I  +       
Sbjct: 129 ADLAGPGAASQAAPSDTPDEHVIWVSATASRNIHELKELIAGLAPADDGD 178


>gi|327399772|ref|YP_004340641.1| GTP-binding protein Era-like-protein [Hippea maritima DSM 10411]
 gi|327182401|gb|AEA34582.1| GTP-binding protein Era-like-protein [Hippea maritima DSM 10411]
          Length = 297

 Score = 90.7 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 79/189 (41%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AIV+  P  TR  +   L+ + Y +   DT G+ E++
Sbjct: 7   VAMIGKPNVGKSTLLNLLIGEKIAIVSPKPQATRKSVRGILNGKDYQIIFIDTPGVHESE 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYS 333
             + +   K     +E+ DL +++ + + + +            K+   I I  K+DL +
Sbjct: 67  KKLNQVMKKYIDEALEDFDLAVVITDNHGEIDEVLAEYLSKIKEKSKKAILIVNKTDLMN 126

Query: 334 TYTEEYDH--LISSFTGEGL------------EELINKIKSILSNKFKKLPFSIPSHKRH 379
               E       S    E +            E+++  I  +L    K     I S +  
Sbjct: 127 KEQIEQIKSEFTSKANFEKIIETSLIGSPDAKEKILEAILELLPEGPKYYEDDIISTETE 186

Query: 380 LYHLSQTVR 388
            + +++ +R
Sbjct: 187 RFIIAEIIR 195


>gi|160940878|ref|ZP_02088218.1| hypothetical protein CLOBOL_05770 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436122|gb|EDP13889.1| hypothetical protein CLOBOL_05770 [Clostridium bolteae ATCC
           BAA-613]
          Length = 303

 Score = 90.7 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 74/199 (37%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI +D P TTR+ +      +   +   DT GI +  
Sbjct: 12  VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDDRGQIIFLDTPGIHKAK 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKN--IDFIFIGTKSD--- 330
           + + +  +      ++  D+IL L E         +      KN     I +  K D   
Sbjct: 72  NKLGQYMVNVAEHTLKEVDVILWLVEPATFIGAGERHIAEQLKNVKTPIILVINKIDTVK 131

Query: 331 -------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                    + Y +  D      +S+   +  + L   I   L    +       + +  
Sbjct: 132 NQDEILTFIAAYKDVCDFAEIVPLSALKDKNTDLLTELIFKYLPYGPQFYDEDTVTDQPM 191

Query: 380 LYHLSQTVRYLEMASLNEK 398
               ++ +R   +  L+++
Sbjct: 192 RQIAAELIREKALRLLDDE 210


>gi|212550703|ref|YP_002309020.1| GTP-binding protein Era [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548941|dbj|BAG83609.1| GTP-binding protein Era [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 300

 Score = 90.7 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 80/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L    ++I+T    TTR  +   ++     +  SDT GI   +
Sbjct: 14  VNIVGNPNVGKSTLMNTLVGGKLSIITSKAQTTRHRIIGIVNKPNVQIVFSDTPGILRPN 73

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLYST 334
             ++K+ +  +   +E+AD++L + +I +   K +    K    N+  + I  K DL++ 
Sbjct: 74  YKLQKKMLNFSESALEDADILLYVSDIKNQLVKTDFFLKKMQQTNLPILLILNKIDLFNQ 133

Query: 335 YTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
              E                 IS+      + L  +I+ +L         +  + +   +
Sbjct: 134 KQLEQKVIEYHKILPNAEIIPISAINQFNTDYLQKRIEKLLPESPPYFEKNTITDRPARF 193

Query: 382 HLSQTVR 388
             ++ +R
Sbjct: 194 FSTEIIR 200


>gi|56552280|ref|YP_163119.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543854|gb|AAV90008.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 306

 Score = 90.7 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L NAL  + +AI++    TTR  L      +   + + DT GI    
Sbjct: 17  VAIVGAPNAGKSTLVNALVGQKIAIISPKAQTTRARLMGIALQDQTQILLVDTPGIFTPK 76

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
              ++  +   +   E A+L+ L+ + +S          E    +    + I  K D   
Sbjct: 77  KRFDRAMVAAAWGSAEGANLVALVVDASSGLTRRIEPLVEAVAARKEPKVIILNKVDITP 136

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     LY     E   ++S+ TG+G+ +L + +  ++       P    S     
Sbjct: 137 KAELLALAQKLYEAIKPEALFMVSATTGDGVADLKHSLADMMPESPWHFPEDQVSDVTDR 196

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+++
Sbjct: 197 MLAAEITREQIFLQLHDE 214


>gi|169632754|ref|YP_001706490.1| GTP-binding protein Era [Acinetobacter baumannii SDF]
 gi|260556583|ref|ZP_05828801.1| GTP-binding protein Era [Acinetobacter baumannii ATCC 19606]
 gi|169151546|emb|CAP00313.1| GTP-binding protein,16S rRNA-binding,ribosome-associated GTPase
           [Acinetobacter baumannii]
 gi|260409842|gb|EEX03142.1| GTP-binding protein Era [Acinetobacter baumannii ATCC 19606]
          Length = 342

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 78/210 (37%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +
Sbjct: 42  VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 101

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + K   +     + + +L+L + +        ++   K    ++  I +  K+D + 
Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVIDAHKWTQNDDLVLDKLKNADMPVILVINKADTFG 161

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E    +               S+  G  LE L   I+  L  +     F   + +  
Sbjct: 162 DKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITDRSE 221

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M  L E +   D+ +   
Sbjct: 222 RFLASEIIREKIMRQLGE-ELPYDLTVQIE 250


>gi|319407032|emb|CBI80669.1| GTP-binding protein Era [Bartonella sp. 1-1C]
          Length = 300

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 88/203 (43%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++   +  +   + + DT G
Sbjct: 8   RSGF-VALIGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIYDKTQIILIDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE--------INSKKEISFPKNIDFIFIGTK 328
           +      +E+  +   +   +NAD++L+L +        +++  +I      D I +  K
Sbjct: 67  VFRPHKRLERAMVSAAWGGAKNADILLVLIDAQSGLSDEVDAMLDILKSIEQDKILVLNK 126

Query: 329 SD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D         L +   E  +     +IS+  G G ++L++ + +I+       P    S
Sbjct: 127 IDTVVKSSLLALTAKVNERVNFLQTFMISALNGSGCKDLLHYLSTIMQEGPWYYPEDQIS 186

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+++
Sbjct: 187 DMPMRQLAAEITREKLFLRLHQE 209


>gi|308174317|ref|YP_003921022.1| GTP-binding protein [Bacillus amyloliquefaciens DSM 7]
 gi|307607181|emb|CBI43552.1| GTP-binding protein [Bacillus amyloliquefaciens DSM 7]
          Length = 301

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 22/198 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +   L         
Sbjct: 2   TNESFKSGF-VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIF 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISFPK----NIDFI 323
            DT GI +    +    +K     ++  DL+L +           E    K    +    
Sbjct: 61  IDTPGIHKPKHKLGDFMMKVAQNTLKEVDLVLFMINAEEGYGKGDEFIIEKLGQTSTPVF 120

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            I  K D         L   Y   Y       IS+  G  +E L+ +I++ L    +  P
Sbjct: 121 LIVNKIDKIHPDQLLLLIDEYRTRYPFKEIVPISALEGNNVETLLAQIEAYLPEGPQFYP 180

Query: 371 FSIPSHKRHLYHLSQTVR 388
               +     + +S+ +R
Sbjct: 181 SDQVTDHPERFIISELIR 198


>gi|220904769|ref|YP_002480081.1| small GTP-binding protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869068|gb|ACL49403.1| small GTP-binding protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 408

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 20/150 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I +LG  N GKSSL NAL  +DVAIV+  PGTT D +   L++     V   DTAG  
Sbjct: 10  LHIAVLGRCNVGKSSLLNALCGQDVAIVSATPGTTADPVEKTLEMAPLGPVVFLDTAG-- 67

Query: 279 ETDDIVEKEGIK--RTFLEVENADLILLLKEINS----KKEISF---PKNIDFIFIGTKS 329
            TDD  E  G++  R+   +  ADL LL+ +  S    +++++     + I F+ +  K+
Sbjct: 68  -TDDTGELGGLRAGRSLAAMTRADLALLVTDSPSWGPYERDLAARLKEQEIPFVAVRNKA 126

Query: 330 DLYSTYT-------EEYDHLISSFTGEGLE 352
           D   +         E     +S+++G+GL+
Sbjct: 127 DQPGSMARPQGLSDEVPFVCVSAYSGQGLD 156


>gi|294155403|ref|YP_003559787.1| GTP-binding protein Era [Mycoplasma crocodyli MP145]
 gi|291600406|gb|ADE19902.1| GTP-binding protein Era [Mycoplasma crocodyli MP145]
          Length = 290

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
             ILG  N GKSSL N++   +++IVT  P TTRD +T   + EGY +  +DT GI +  
Sbjct: 6   CTILGRPNVGKSSLLNSILSYNLSIVTPTPQTTRDQITGVYNEEGYQIIFTDTPGIHKPI 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDFIF----IGTKSDLYST 334
           + + +   K  +  V+N DL L L   +    K +I    N+  I     + TK D    
Sbjct: 66  NKLGEALNKNAYDTVKNNDLALFLTPADETIGKGDILILDNLKHIKNKVAVITKVDKIKG 125

Query: 335 YTEEYDHLISSFTGEG--------------LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
             E  +  + S    G              ++ LI+ +K               + K   
Sbjct: 126 KPELIEQKLESLKEYGFNKILSTSTQNSKSIDFLISTLKEFTYEDNAYYDQDYLTDKPMR 185

Query: 381 YHLSQTVR 388
           +   + +R
Sbjct: 186 FLAKEIIR 193


>gi|260754027|ref|YP_003226920.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258553390|gb|ACV76336.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 306

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 77/198 (38%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L NAL  + +AI++    TTR  L      +   + + DT GI    
Sbjct: 17  VAIVGAPNAGKSTLVNALVGQKIAIISPKAQTTRARLMGIALQDQTQILLVDTPGIFTPK 76

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
              ++  +   +   E A+L+ L+ + +S          E    +    + I  K D   
Sbjct: 77  KRFDRAMVAAAWGSAEGANLVALVVDASSGLTRRIEPLVEAVAARKEPKVIILNKVDITP 136

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     LY     E   ++S+ TG+G+ +L   +  ++       P    S     
Sbjct: 137 KAELLALAQKLYEAIKPEALFMVSATTGDGVADLKRSLADMMPESPWHFPEDQVSDVTDR 196

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+++
Sbjct: 197 MLAAEITREQIFLQLHDE 214


>gi|167752992|ref|ZP_02425119.1| hypothetical protein ALIPUT_01255 [Alistipes putredinis DSM 17216]
 gi|167659306|gb|EDS03436.1| hypothetical protein ALIPUT_01255 [Alistipes putredinis DSM 17216]
          Length = 394

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I   G  N+GKSSL NAL  +  A+V+  PGTT D +   +++ G     + DT G
Sbjct: 9   ERLHIAFYGRRNSGKSSLINALTGQQSAVVSATPGTTTDPVLKTMEIHGLGPCVLIDTPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE--INSKKEISF-----PKNIDFIFIGTKS 329
             +  D+     ++++   ++  DL +LL    +    EI +      ++I  + + +K+
Sbjct: 69  FDDEGDLGALR-VQQSRKMLDKTDLAVLLLSGAVPQNDEIEWFRLLEARHIPIVVVRSKA 127

Query: 330 DLYSTYTE--------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL++  ++        +    +S+    GL+ L   +   L   + +   +
Sbjct: 128 DLFTGMSDAEAEALFGQRPLRVSASDRTGLDALREALIRNLPEDYNQPEIT 178


>gi|77165915|ref|YP_344440.1| GTP-binding protein Era [Nitrosococcus oceani ATCC 19707]
 gi|76884229|gb|ABA58910.1| GTP-binding protein Era [Nitrosococcus oceani ATCC 19707]
          Length = 306

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR GY I I+G  N GKSSL N +  + ++I +  P TTR  +     L G      DT 
Sbjct: 13  IRCGY-IAIIGRPNVGKSSLLNRILGQKISITSRRPQTTRHRILGIKTLAGIQAIYVDTP 71

Query: 276 GIRETDDIVEKEGIKRTFLE-VENADLILLLKEI-----NSKKEISFPKNI--DFIFIGT 327
           G ++ +  +    + R     +E  DLIL + E      + +  +   +      + +  
Sbjct: 72  GFQDKERRLMNRYLNRAIDSTLEEVDLILFVIEAFQFTKDDEWILQRLRRCAVPIVLVLN 131

Query: 328 KSD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D              L           +S++ G+ +  L +K+  +L       P   
Sbjct: 132 KVDRIIDKKSLLPAIATLSKKREFAAIIPVSAWKGDNVAVLESKVAELLPEGPMAYPEDQ 191

Query: 374 PSHKRHLYHLSQTVR 388
            + +   +  ++ +R
Sbjct: 192 VTDRSERFLAAELIR 206


>gi|212705028|ref|ZP_03313156.1| hypothetical protein DESPIG_03096 [Desulfovibrio piger ATCC 29098]
 gi|212671580|gb|EEB32063.1| hypothetical protein DESPIG_03096 [Desulfovibrio piger ATCC 29098]
          Length = 419

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  NAGKSSL NAL  +DVAIV+  PG+T D +   L++     V   DTAG+ 
Sbjct: 15  LHIGLFGRRNAGKSSLLNALVGQDVAIVSPTPGSTTDPVEKTLEMAPLGPVVFLDTAGLD 74

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           + +  +  + ++R+   +   D+ LL+ + 
Sbjct: 75  DREASLGAQRVERSLRAMRRVDVALLVLDA 104


>gi|296115042|ref|ZP_06833684.1| GTP-binding protein Era [Gluconacetobacter hansenii ATCC 23769]
 gi|295978379|gb|EFG85115.1| GTP-binding protein Era [Gluconacetobacter hansenii ATCC 23769]
          Length = 302

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 87/203 (42%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  NAGKS+L N +A   ++IV+    TTR  +   L      + + DT G
Sbjct: 10  RCGF-VAIVGAPNAGKSTLLNRMAGTKLSIVSPKAQTTRFRVLGILMRNHAQMLLVDTPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTK 328
           I     ++++  +   +   E+AD+ LL+ +  +    +          +N     +  K
Sbjct: 69  IFRPRRMLDRAMVAAAWTGAEDADITLLIIDARAGLTEAVREIVSQLAQRNRRVWLVLNK 128

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +DL                 T E+  +IS+ +G+G+++L++++ + L       P    +
Sbjct: 129 TDLMRRDALLPLTAELSGLLTVEHVFMISARSGQGVDDLMDRMAAELPVGPYLYPEDDLT 188

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++ VR       +E+
Sbjct: 189 DLPDRLLAAELVREQIFLQTHEE 211


>gi|254433531|ref|ZP_05047039.1| GTP-binding protein Era [Nitrosococcus oceani AFC27]
 gi|207089864|gb|EDZ67135.1| GTP-binding protein Era [Nitrosococcus oceani AFC27]
          Length = 303

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR GY I I+G  N GKSSL N +  + ++I +  P TTR  +     L G      DT 
Sbjct: 10  IRCGY-IAIIGRPNVGKSSLLNRILGQKISITSRRPQTTRHRILGIKTLAGIQAIYVDTP 68

Query: 276 GIRETDDIVEKEGIKRTFLE-VENADLILLLKEI-----NSKKEISFPKNI--DFIFIGT 327
           G ++ +  +    + R     +E  DLIL + E      + +  +   +      + +  
Sbjct: 69  GFQDKERRLMNRYLNRAIDSTLEEVDLILFVIEAFQFTKDDEWILQRLRRCAVPIVLVLN 128

Query: 328 KSD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D              L           +S++ G+ +  L +K+  +L       P   
Sbjct: 129 KVDRIIDKKSLLPAIATLSKKREFAAIIPVSAWKGDNVAVLESKVAELLPEGPMAYPEDQ 188

Query: 374 PSHKRHLYHLSQTVR 388
            + +   +  ++ +R
Sbjct: 189 VTDRSERFLAAELIR 203


>gi|257869127|ref|ZP_05648780.1| GTP-binding protein Era [Enterococcus gallinarum EG2]
 gi|257803291|gb|EEV32113.1| GTP-binding protein Era [Enterococcus gallinarum EG2]
          Length = 299

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 21/187 (11%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  N GKS+L N +  + +AI++D   TTR+ +          +   DT GI +   
Sbjct: 10  AIVGRPNVGKSTLLNRVVGQKIAIMSDKAQTTRNKIQGVYTTPDAQIVFIDTPGIHKPKH 69

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY-- 332
            +    ++  +  +   D+ L +   + K+        E           +  K D    
Sbjct: 70  RLGDFMVETAYSALREVDVTLFMISADQKRGKGDDFIIERLRKNETPVFLVINKIDKVHP 129

Query: 333 -----------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                      +  T      IS+  G   E L+  +   +    +  P    +     +
Sbjct: 130 DELLAIIEDYAAQMTFAEIVPISATEGNNFETLMRLVIDQMPEGPQYFPEDQITDHPEYF 189

Query: 382 HLSQTVR 388
            +S+ VR
Sbjct: 190 IVSELVR 196


>gi|297617742|ref|YP_003702901.1| small GTP-binding protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145579|gb|ADI02336.1| small GTP-binding protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 416

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 20/171 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  N GKSSL NAL  +D+A+V+ + GTT D +   +++     V+I DTAGI 
Sbjct: 11  LHIAIFGRRNVGKSSLINALTNQDIALVSPMAGTTTDPVYKAMEILPIGPVEIIDTAGID 70

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD 330
           + +  + +  IK+T   +   DL +L+ +            KE    KNI  +F  +K+D
Sbjct: 71  D-EGFLGQLRIKKTMEVLNKTDLAVLVIDPVLGVGEFETRLKETIEKKNIPIVFAASKAD 129

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                      +     +    +SS T  GLEEL  ++      +F++   
Sbjct: 130 TPEFSLETVKTWEEVLGKPIIPVSSLTRSGLEELKQQMIKAAPRQFEEPNI 180


>gi|242373872|ref|ZP_04819446.1| GTP-binding protein Era [Staphylococcus epidermidis M23864:W1]
 gi|242348426|gb|EES40028.1| GTP-binding protein Era [Staphylococcus epidermidis M23864:W1]
          Length = 300

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   D
Sbjct: 3   EEHKSGF-VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFID 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           T GI +    +    ++     +   D I+ +  +N           E+          +
Sbjct: 62  TPGIHKPKHKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKNVKTPIFLV 121

Query: 326 GTKSDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL            Y E  D      IS+  G  ++  I+ +KS L    K  P  
Sbjct: 122 LNKIDLVHPDALMPKIEQYKEYMDFTDIIPISALEGLNVDHFIDVLKSYLPEGPKYYPDD 181

Query: 373 IPSHKRHLYHLSQTVR 388
             S     + +S+ +R
Sbjct: 182 QISDHPEQFVVSEIIR 197


>gi|317499140|ref|ZP_07957417.1| GTP-binding protein Era [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893553|gb|EFV15758.1| GTP-binding protein Era [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 301

 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G  N GKS+L N L  + +AI +  P TTR+ +      E   +   DT GI    
Sbjct: 10  VTFIGRPNVGKSTLMNRLIGQKIAITSSKPQTTRNRIQTVYTDERGQIIFLDTPGINRAK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSDLYS 333
           + +    ++     +   D++L L E ++          E         I +  K D   
Sbjct: 70  NKLGNYMLQVAERTLNEVDVVLWLVEPSTFIGGGEKYIIEQLSKIKTPIILVINKIDTVE 129

Query: 334 T--YTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                E  D             +S+  G+  +++I+ I   L            + +   
Sbjct: 130 EKDILEAIDTYKDVCEFAEIIPVSALKGKNTDDVIDSIYKYLDEGPMYFDEDTITDQPER 189

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++ +R   +  L+++
Sbjct: 190 QICAELIREKALRLLSQE 207


>gi|322383675|ref|ZP_08057426.1| Era-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151887|gb|EFX44830.1| Era-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 300

 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 87/219 (39%), Gaps = 25/219 (11%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           + G+K   + ++G  N GKS+L N +  + +AI++D P TTR+ +      E   +   D
Sbjct: 4   KKGFKSGFVALIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTTEHAQIVFLD 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFI 325
           T GI +    +    +K     +   D IL L ++        +  I   K      I +
Sbjct: 64  TPGIHKPQSKLGDYMMKVAHSTLAEVDAILFLVDVAEGIGGGDRFIIEQLKSVQTPVILV 123

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         + STY E Y       +S+  G  +  ++ +I   L    +  P  
Sbjct: 124 LNKIDKVHPEDLLPVISTYKELYPFTEIVPVSALQGNNVTTMLEQITKYLEEGPQYYPAD 183

Query: 373 IPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLR 410
             +     + +++ +R  +   +  E    + +  E++R
Sbjct: 184 QVTDHPEQFVVAELIREKILHLTREEIPHSIAVTIEDIR 222


>gi|241761662|ref|ZP_04759749.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241373970|gb|EER63503.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 306

 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 77/198 (38%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L NAL  + +AI++    TTR  L      +   + + DT GI    
Sbjct: 17  VAIVGAPNAGKSTLVNALVGQKIAIISPKAQTTRARLMGIALQDQTQILLVDTPGIFTPK 76

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
              ++  +   +   E A+L+ L+ + +S          E    +    + I  K D   
Sbjct: 77  KRFDRAMVAAAWGSAEGANLVALVVDASSGLTRRIEPLVEAVAARKEPKVIILNKVDITP 136

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     LY     E   ++S+ TG+G+ +L   +  ++       P    S     
Sbjct: 137 KAELLALAQKLYEAIKPEALFMVSATTGDGVADLKRSLADMMPESPWHFPEDQVSDVTDR 196

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+++
Sbjct: 197 MLAAEITREQIFLQLHDE 214


>gi|326387677|ref|ZP_08209283.1| GTP-binding protein Era [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207723|gb|EGD58534.1| GTP-binding protein Era [Novosphingobium nitrogenifigens DSM 19370]
          Length = 312

 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 78/203 (38%), Gaps = 22/203 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L NAL  + VAIV+    TTR  L          + + DT G+ E  
Sbjct: 23  VAVIGAPNAGKSTLVNALVGQKVAIVSSKAQTTRARLMGIALEGPAQIILVDTPGLFEPR 82

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSD--- 330
             +++  +   +   E AD I+L+ +   KK             +    I +  K D   
Sbjct: 83  RRLDRAMVHAAWEGAEAADAIVLVVDARKKKRDYLEGILATLKERPERRILVLNKVDSTA 142

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     L +    +    +S+ TG+G+ E   ++ +++       P    S     
Sbjct: 143 KEPLLVAAQELAAAGGFDEVFFVSALTGDGVSEFKTRLGALMPEGPWHYPEDQVSDASER 202

Query: 381 YHLSQTVRYLEMASLNEKDCGLD 403
              ++  R      L++ +   D
Sbjct: 203 LLAAEITREQLYRQLHD-ELPYD 224


>gi|310659078|ref|YP_003936799.1| GTP-binding protein era [Clostridium sticklandii DSM 519]
 gi|308825856|emb|CBH21894.1| GTP-binding protein Era [Clostridium sticklandii]
          Length = 305

 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 25/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N+L  + +AI++D P TTR+ +    + +   +   DT GI++  
Sbjct: 16  VSIIGRPNVGKSTLMNSLVGEKIAIMSDKPQTTRNQIRAIYNDDEMQIVFMDTPGIQKPQ 75

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----------------INSKKEISFPKNIDFIF 324
           + +    +K +   + + D+IL + +                  N  K+I     ID + 
Sbjct: 76  NRLGDYMLKVSHSSMRDTDVILFVVDDSKSIGKKDSDIIETLKTNKSKKILAINKIDKLS 135

Query: 325 IGTKSDLYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                DL + Y++    +    +S+  G     LI  +   +       P  + + +   
Sbjct: 136 KEELMDLINMYSKIGIFDEIVPVSALKGTNNNTLIKVLAKYMEAGPLYFPVDMITDQPEK 195

Query: 381 YHLSQTVRY-LEMASLNEKDCGLDIIAENL 409
             +S+ +R  L M +  E   G   IA ++
Sbjct: 196 VLVSEIIREKLLMYTDQEIPHG---IAVDI 222


>gi|308176886|ref|YP_003916292.1| GTPase [Arthrobacter arilaitensis Re117]
 gi|307744349|emb|CBT75321.1| putative GTPase [Arthrobacter arilaitensis Re117]
          Length = 553

 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 128/363 (35%), Gaps = 42/363 (11%)

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN-GKIDLLEA 128
           P P +F G   AE         +  I+        +  A      RRA E+  K+ +++ 
Sbjct: 178 PDPSTFLGSGKAEE--------LRAIVASSGADTVVVDAELAPSQRRALEDIVKVKVIDR 229

Query: 129 ESLADLISSETEMQR----RLSMEGMSGELSSLYGQW-----IDKLTHIRSFIEADLDFS 179
            SL   I ++    R    ++ +  +   L      W           + +         
Sbjct: 230 TSLILDIFAQHAQSREGKAQVELAQLE-YLLPRLRGWGESMSRQAGGRVGAAGGGIGSRG 288

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGYK-IVILGHSNAGKSSLF 236
             E       + + + +  L+ +I +     + K     RN    + I G++NAGKSSL 
Sbjct: 289 PGETKIEMDRRRIRDRMAKLRREIKAMKPAREAKRANRKRNAVPAVAIAGYTNAGKSSLL 348

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L    V +   +  T    +      +G    ++DT G          E  + T  E+
Sbjct: 349 NRLTNAGVLVENALFATLDPTVRQSATEDGLTYTLADTVGFVSNLPTQLVEAFRSTLEEI 408

Query: 297 ENADLILLLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLI- 343
            ++DLIL + + +                     NI  I +  K+D+   +  E      
Sbjct: 409 ADSDLILHVVDGSHPDPEGQIQAVRTVLGEVDALNIPEIIVVNKADVADPFVIERIRNRE 468

Query: 344 ------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH-LSQTVRYLEMASLN 396
                 S+ TGEG+EEL+ KI S +     +L   IP ++  L   L Q+   +  +   
Sbjct: 469 SNTAVVSAHTGEGIEELLEKISSSIPRPGIQLEVLIPYNRGDLIAKLHQSESEILESEHL 528

Query: 397 EKD 399
           E  
Sbjct: 529 ENG 531


>gi|218961441|ref|YP_001741216.1| GTP-binding protein Era [Candidatus Cloacamonas acidaminovorans]
 gi|167730098|emb|CAO81010.1| GTP-binding protein Era [Candidatus Cloacamonas acidaminovorans]
          Length = 299

 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 79/191 (41%), Gaps = 20/191 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + I+G  N GKS+L N +  + ++I +  P TTR  +    +   + +   DT G
Sbjct: 13  KSGF-VTIIGKPNTGKSTLMNLILGEKISITSPKPQTTRYAIKGIWNTSEHQIIFVDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPK--NIDFIFIGTK 328
             +    ++++ +K     +++ DLI+ L +I+       K+ ++  K      + +  K
Sbjct: 72  YLKPRYELQEKMLKIWHNALKDVDLIIFLTQIDGFPTEYDKEVLNQLKTLKNPQLAVFNK 131

Query: 329 SDLYSTYTE-----------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            DL                      +S+ TGE + EL+  IK  +          + S  
Sbjct: 132 LDLNPEVDRNELVKYLPESINEVFFVSAKTGENIPELMEAIKYYIPFHEPYYDNDMLSDL 191

Query: 378 RHLYHLSQTVR 388
              +   + +R
Sbjct: 192 PMRFFAQEIIR 202


>gi|253576866|ref|ZP_04854191.1| GTPase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843733|gb|EES71756.1| GTPase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 420

 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 83/184 (45%), Gaps = 27/184 (14%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++    GE       I + G +N GKSS+ NAL  +++A+V+ + GTT D +   ++L  
Sbjct: 3   LNATPRGERT----HIAVFGRTNVGKSSVVNALTGQEIAVVSPVRGTTTDPVYKAMELLP 58

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------P 317
              V + DTAG+ +  ++ E+   ++T   +  ADL LL+ +  +  +  +         
Sbjct: 59  LGPVVLIDTAGLDDEGELGERRK-QKTRELIHRADLALLVIDALAGPDDFYRELLAELKQ 117

Query: 318 KNIDFIFIGTKSD----------LYSTYTEEYDHLISSFT---GEGLEELINKIKSILSN 364
           + I  + +  K D          + +    +      +F+   G G+ EL   I + L +
Sbjct: 118 RKIPVVGVVNKVDALLDTDARAAVLAEVKAQLGLECVAFSALDGSGVPELKRAIVAALPH 177

Query: 365 KFKK 368
           + ++
Sbjct: 178 EEER 181


>gi|312190415|gb|ADQ43214.1| GTP binding protein [Eutrema parvulum]
          Length = 426

 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 86/213 (40%), Gaps = 29/213 (13%)

Query: 205 SHISQGKLGEI-----IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           + +   ++ E+       +   + ++G  N GKS+L N +  + ++IVTD P TTR  + 
Sbjct: 109 ALLDDYEMEELGHTPDTNHRSYVAVVGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRIL 168

Query: 260 IDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEI-NSKKEIS-- 315
                  Y + + DT G+ E     ++   +K       NAD +++L +   +  +I   
Sbjct: 169 GICSSPEYQMILFDTPGVIEKKMHRLDTMMMKNVRDAAINADCVVILVDACKTPAKIEEV 228

Query: 316 -------FPKNIDFIFIGTKSDL------------YSTYTE-EYDHLISSFTGEGLEELI 355
                    K    + +  K DL            Y  +T+ +    +S+  G G+E++ 
Sbjct: 229 LKEGLGDLEKRPPMLLVMNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGIEDVK 288

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             I S L       P  I S     + +++ VR
Sbjct: 289 EWILSKLPFGPPYYPKDIVSEHPERFFVAEIVR 321


>gi|242278811|ref|YP_002990940.1| small GTP-binding protein [Desulfovibrio salexigens DSM 2638]
 gi|242121705|gb|ACS79401.1| small GTP-binding protein [Desulfovibrio salexigens DSM 2638]
          Length = 400

 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 18/169 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I ++G  NAGKSSL NA++ +DVAIV+D PGTT D +    +L     V   DTAG+ 
Sbjct: 11  LVITLVGKRNAGKSSLINAISGQDVAIVSDQPGTTTDPVAKHYELLPLGPVTFYDTAGLD 70

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLK--EINSKKEISFPKN-----IDFIFIGTKSDL 331
           ++ ++ E   IK T   +   DL L++   +  +  E+          I ++    K+DL
Sbjct: 71  DSGEVGELR-IKATNKVMMRTDLALVVIGEDGLTDYEMKLIDKVSELEIPYLVAFNKNDL 129

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                 + D+           S   G  +++L   I ++   + K+ P 
Sbjct: 130 CEPLESDMDYCRQRGIPFYKTSVLEGCSIDKLKEAIITLAPEEMKRDPV 178


>gi|238022840|ref|ZP_04603266.1| hypothetical protein GCWU000324_02757 [Kingella oralis ATCC 51147]
 gi|237866043|gb|EEP67179.1| hypothetical protein GCWU000324_02757 [Kingella oralis ATCC 51147]
          Length = 70

 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLL 429
                +  RH++ L    R L+ A+L      L+++AE+LRLA  +  +ITG    + LL
Sbjct: 1   EGLFLARSRHIHALETAQRELDNAALCGNHQ-LELLAEHLRLAQNACSEITGEFTADDLL 59

Query: 430 DIIFSKFCIGK 440
            +IFS+FCIGK
Sbjct: 60  GVIFSRFCIGK 70


>gi|123969012|ref|YP_001009870.1| GTP-binding protein Era [Prochlorococcus marinus str. AS9601]
 gi|123199122|gb|ABM70763.1| GTP-binding protein Era [Prochlorococcus marinus str. AS9601]
          Length = 303

 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + +LG  N GKS+L N L  + + I + I  TTR+ L   L  +   +   DT 
Sbjct: 4   YRSGF-VTLLGRPNVGKSTLINKLIGEKITITSPIAQTTRNKLKGILTTKDGQIIFVDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGT 327
           G+ +    + +  +K     +   D+++ + + + +                 +FI    
Sbjct: 63  GVHKPHHRLGEILVKNAKSAINGVDMVIFVIDSSEEPGRGDEYILNFLIANKTEFIVALN 122

Query: 328 KSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL +                        S+  GEG  ELI+   + L    K      
Sbjct: 123 KWDLVNKEFRNLRLDQYRRFFGIYRNFQVVSASQGEGCSELIDMALNFLPEGPKLYGEET 182

Query: 374 PSHKRHLYHLSQTVR 388
              +     LS  VR
Sbjct: 183 ICDQPLDNLLSDLVR 197


>gi|4467683|emb|CAB37793.1| GTP-binding protein homologue [Helicobacter pylori]
          Length = 170

 Score = 90.3 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ + I +D  GTTRD     + L  + V++ DT G+ + D
Sbjct: 10  IAILGQPNVGKSSLFNRLARERMPITSDFAGTTRDFNKRKIALNAHEVELLDTGGMAK-D 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEIS-----FPKNIDFIFIGTKSD--- 330
            ++ KE         + +DLI  + +   I S +++      F  N +   +  K D   
Sbjct: 69  ALLSKEIKALNLKAAQMSDLISYVVDGKSIPSDEDLKLFSEFFKTNPNCFLVINKIDNDK 128

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
                  +S++       IS     G+  LI+ I S L+
Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILSALN 167


>gi|154505209|ref|ZP_02041947.1| hypothetical protein RUMGNA_02722 [Ruminococcus gnavus ATCC 29149]
 gi|153794407|gb|EDN76827.1| hypothetical protein RUMGNA_02722 [Ruminococcus gnavus ATCC 29149]
          Length = 397

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 17/167 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSSL NALA + V+IV+D  GTT D +   ++L     V + DT G
Sbjct: 10  ERIHIGIFGKRNAGKSSLINALAGQPVSIVSDFKGTTTDPVKKAMELLPLGPVVLIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTK 328
           + +T ++     I++T   +   D+ LL+ +     ++++I        K I F+    K
Sbjct: 70  LDDTGELGSLR-IEKTQQILNTTDIALLVIDGQLGITEEDIQILQQIRKKQIPFVIAVNK 128

Query: 329 SDLY-------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
            DL           + E    +S+  G  + EL   +   L    K 
Sbjct: 129 MDLAPASPVLPDEISPEQVLYVSAAAGTQIHELKELLAKQLGQTPKT 175


>gi|134101736|ref|YP_001107397.1| GTP-binding protein EngA [Saccharopolyspora erythraea NRRL 2338]
 gi|291003092|ref|ZP_06561065.1| GTP-binding protein EngA [Saccharopolyspora erythraea NRRL 2338]
 gi|133914359|emb|CAM04472.1| small GTP-binding protein domain [Saccharopolyspora erythraea NRRL
           2338]
          Length = 480

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 105/277 (37%), Gaps = 30/277 (10%)

Query: 126 LEAESLADLISSETEMQR-RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
             A+++  ++ ++        ++  +            +K+   R+  EA   +S     
Sbjct: 118 STADAILLVVDAQVGATATEEAVARVLRRSKRPVLVAANKVDDERAMAEAHALWSLGLGE 177

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKK 242
               S         L + I +        E  + G   ++ ++G  N GKSSL N L  +
Sbjct: 178 PMPVSGLHGRGSGDLLDKILAVFPDVPHEEFGKTGGPRRVALVGKPNVGKSSLLNRLTGE 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENA 299
             A+V D+ GTT D +   ++L+G + +  DTAG+R   +T    E     RT   +E A
Sbjct: 238 LRAVVDDVAGTTVDPVDSLVELDGEVWRFVDTAGLRKRVKTASGTEYYASLRTKAAIEAA 297

Query: 300 DLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYST-----YTEEYD------ 340
           ++ ++L + +            +        +    K DL          +E D      
Sbjct: 298 EVAIVLVDASQPLTEQDLRVFTMVVEAGRALVIAYNKWDLVDEDRRHQLDKEIDRELVRV 357

Query: 341 -----HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                  +S+ TG  + +L   +++ L++   ++P  
Sbjct: 358 RWAERVNVSALTGRAVGKLAPTLRTALNSWDTRIPTG 394



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 17/160 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  +  A+V D PG TRD +  D    G    + DT G     
Sbjct: 43  LAVVGRPNVGKSTLVNRLLGRREAVVQDTPGVTRDRVAYDALWNGRRFTVVDTGGWEPDA 102

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYS 333
             ++     +  + +  AD ILL+ +          +   +        +    K D   
Sbjct: 103 KGLQAAVAAQAEMAMSTADAILLVVDAQVGATATEEAVARVLRRSKRPVLVAANKVDDER 162

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSN 364
              E +            +S   G G  +L++KI ++  +
Sbjct: 163 AMAEAHALWSLGLGEPMPVSGLHGRGSGDLLDKILAVFPD 202


>gi|124023647|ref|YP_001017954.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9303]
 gi|123963933|gb|ABM78689.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9303]
          Length = 343

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 24/198 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ + ++G  N GKS+L N L  + VAI + +  TTR+ L   +      + + D
Sbjct: 38  EGYRSGF-VALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAIVTTPEAQMVLVD 96

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
           T GI +   ++ +  ++     +   DL+LLL E             E+   +++  +  
Sbjct: 97  TPGIHKPHHLLGERLVQSARAAIGEVDLVLLLLEGCEPPGRGDAFIVELLRQQDLPVLVA 156

Query: 326 GTKSDLYSTYTEEYD---------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             K D  +    +                    S+ +GEG   L+  +   L    +  P
Sbjct: 157 LNKWDRVAEQQHDPAEEAYRQLLADSAWPLIRCSAISGEGCNGLVEALVGQLPLGPQLYP 216

Query: 371 FSIPSHKRHLYHLSQTVR 388
             +   +     L++ +R
Sbjct: 217 AEMVCDQPERVLLAELIR 234


>gi|325268711|ref|ZP_08135340.1| GTP-binding protein Era [Prevotella multiformis DSM 16608]
 gi|324988955|gb|EGC20909.1| GTP-binding protein Era [Prevotella multiformis DSM 16608]
          Length = 293

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 83/187 (44%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ E   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTEDAQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKN-----IDFIFIGTKSDL--- 331
             +++  ++ +   + +AD++L + ++  N +K + F +      I  I +  K D    
Sbjct: 67  YKMQEMMLQFSESALADADVLLYVTDVIENPEKNMDFLEKVAKMTIPVILLINKIDESDQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                     +S   +     IS+    G + L+ +++ +L            + K   +
Sbjct: 127 SKLVELVEKWHSLLPDAEILPISAKNKFGTDILMKRVRELLPESPAFFDKDQLTDKPARF 186

Query: 382 HLSQTVR 388
            +S+ +R
Sbjct: 187 FVSEIIR 193


>gi|238917282|ref|YP_002930799.1| GTP-binding protein Era [Eubacterium eligens ATCC 27750]
 gi|238872642|gb|ACR72352.1| GTP-binding protein Era [Eubacterium eligens ATCC 27750]
          Length = 322

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 79/198 (39%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G  N GKS+L N +  + +AI ++ P TTR+ +      E   +   DT GI +  
Sbjct: 28  VTFIGRPNVGKSTLMNQIIGQKIAITSNKPQTTRNRIQTVYTDERGQIVFVDTPGIHKAK 87

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSD--- 330
           + + +  +      +   DLI  L E    + + +E    K        + +  K+D   
Sbjct: 88  NKLGEYMVGAAEKTISEVDLICWLVEPTTHLGAAEEHIVEKLKECKTPIVLVINKTDTIK 147

Query: 331 ------LYSTYTEEYDHLIS----SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y +E D +      +  G  +++L++ I   L            + +   
Sbjct: 148 KEEILPVIDCYRKELDFVDIVPVCARNGNNVDDLLDVIFLHLDYGPMYYDEDTVTDQPMK 207

Query: 381 YHLSQTVRYLEMASLNEK 398
             +++ +R   + +LN++
Sbjct: 208 QIVAELIREKALHALNDE 225


>gi|223044391|ref|ZP_03614425.1| GTP-binding protein Era [Staphylococcus capitis SK14]
 gi|314933739|ref|ZP_07841104.1| GTP-binding protein Era [Staphylococcus caprae C87]
 gi|222442260|gb|EEE48371.1| GTP-binding protein Era [Staphylococcus capitis SK14]
 gi|313653889|gb|EFS17646.1| GTP-binding protein Era [Staphylococcus caprae C87]
          Length = 300

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   D
Sbjct: 3   EEHKSGF-VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFID 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           T GI +    +    ++     +   D I+ +  +N           E+          +
Sbjct: 62  TPGIHKPKHKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKNVKTPIFLV 121

Query: 326 GTKSDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL            Y E  D      IS+  G  ++  I+ +KS L    K  P  
Sbjct: 122 LNKIDLVHPDALMPRIEKYKEYMDFTEIIPISALEGLNVDHFIDVLKSYLPVGPKYYPDD 181

Query: 373 IPSHKRHLYHLSQTVR 388
             S     + +S+ +R
Sbjct: 182 QISDHPEQFVVSEIIR 197


>gi|210633812|ref|ZP_03297859.1| hypothetical protein COLSTE_01776 [Collinsella stercoris DSM 13279]
 gi|210159072|gb|EEA90043.1| hypothetical protein COLSTE_01776 [Collinsella stercoris DSM 13279]
          Length = 338

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 23/219 (10%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLK-NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           DF    D+ +     +L +    +   + +      + E   +G+ + ++G  NAGKS+L
Sbjct: 3   DFDPFADLSDDELDAMLEEGSLAEGAGLPAMSCGTDVPEGFHSGF-VALVGRPNAGKSTL 61

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NA   + VAI + +  TTR  L   ++ EG  + I DT GI +  D +  E  K    E
Sbjct: 62  LNACYGEKVAITSPVAQTTRRRLRAVVNREGCQLVIVDTPGIHKPKDGLGSELNKSALGE 121

Query: 296 VENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY-------------ST 334
           + + D+I  + + ++          E         +   TK+DL              + 
Sbjct: 122 LADVDVIAFVIDASAPIGRGDAWVAERVAAAKAPKVLALTKADLAGPEQMLKQLEAARAL 181

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              + + ++SS  G  +E  ++ +   L    +  P  +
Sbjct: 182 VDFDDEIVVSSTEGFNVEAFVDVVAGFLPEGPRWFPEGM 220


>gi|57867009|ref|YP_188710.1| GTP-binding protein Era [Staphylococcus epidermidis RP62A]
 gi|81674466|sp|Q5HNY0|ERA_STAEQ RecName: Full=GTPase Era
 gi|57637667|gb|AAW54455.1| GTP-binding protein Era [Staphylococcus epidermidis RP62A]
          Length = 299

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   DT GI +  
Sbjct: 9   VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-- 331
             +    ++     +   D I+ +  +N           E+          +  K DL  
Sbjct: 69  HKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKNVKTPIFLVLNKIDLVH 128

Query: 332 ----------YSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     Y +Y +  D   IS+  G  ++  I+ +KS L    K  P +  S     
Sbjct: 129 PDTLMPKIEQYQSYMDFTDIIPISALEGLNVDHFIDVLKSFLPEGPKYYPDNQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 189 FVVSEIIR 196


>gi|325106043|ref|YP_004275697.1| GTP-binding protein Era [Pedobacter saltans DSM 12145]
 gi|324974891|gb|ADY53875.1| GTP-binding protein Era [Pedobacter saltans DSM 12145]
          Length = 292

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 8/138 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L N L  + +AI+T    TTR  +   ++ E Y +  SDT GI +  
Sbjct: 8   VSIVGKPNAGKSTLMNTLVGEKMAIITSKAQTTRHRIIGIVNEEDYQIVFSDTPGIIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------DFIFIGTKSD--LYS 333
             +++  +      + +AD++L + +IN K +     +         + +  K D     
Sbjct: 68  YKLQESMMDAVQGSLVDADILLFVTDINEKHDEQDVLDKIKGSTAKLLVLINKIDESTQE 127

Query: 334 TYTEEYDHLISSFTGEGL 351
              E+ ++       +G+
Sbjct: 128 KVEEKINYWRDKLNPDGI 145


>gi|293363515|ref|ZP_06610271.1| GTP-binding protein Era [Mycoplasma alligatoris A21JP2]
 gi|292552864|gb|EFF41618.1| GTP-binding protein Era [Mycoplasma alligatoris A21JP2]
          Length = 290

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 86/218 (39%), Gaps = 29/218 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
             I+G  N GKSSL NA+   +++IVT  P TTRD +    + EGY V  +DT GI +  
Sbjct: 6   CTIIGRPNVGKSSLLNAILSYNLSIVTATPQTTRDQIMGVYNEEGYQVIFTDTPGIHKPI 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNID----------------- 321
           + +     K  +  ++  DL++ L   +    K ++   +NI                  
Sbjct: 66  NKLGDALNKNAYDTLKENDLVIFLSPGDEMLGKGDLMILENIKNIENKIAIVSKIDKIKS 125

Query: 322 -FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               +  K +  + Y  +     S+F  + +  LI  IK+              + K   
Sbjct: 126 QPELLVEKIERLNNYNFKQIISTSTFNDKSISSLIEIIKTFAYEDNAYYDEDFLTDKTMR 185

Query: 381 YHLSQTVRYLEMASLNEKDCGLDI---IAENLRLASVS 415
           +   + +R   + +L E     ++   IA ++     S
Sbjct: 186 FLAKEIIRESAINALYE-----ELPHSIAIDIEDFIES 218


>gi|319400903|gb|EFV89122.1| GTP-binding protein Era [Staphylococcus epidermidis FRI909]
          Length = 299

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   DT GI +  
Sbjct: 9   VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-- 331
             +    ++     +   D I+ +  +N           E+          +  K DL  
Sbjct: 69  HKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKNVKTPIFLVLNKIDLVH 128

Query: 332 ----------YSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     Y +Y +  D   IS+  G  ++  I+ +KS L    K  P +  S     
Sbjct: 129 PDTLMPKIEQYQSYMDFTDIIPISALEGLNVDHFIDVLKSFLPEGPKYYPDNQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 189 FVVSEIIR 196


>gi|49474067|ref|YP_032109.1| GTP-binding protein Era [Bartonella quintana str. Toulouse]
 gi|49239571|emb|CAF25928.1| GTP-binding protein era homolog [Bartonella quintana str. Toulouse]
          Length = 301

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 88/203 (43%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +V++G  NAGKS+L N L    V+IVT    TTR ++   +  +   + + DT G
Sbjct: 8   RSGF-VVLIGMPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIHDNTQIVLIDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
           +      +E+  +   +   ++AD++L+L + +S          +I      D I +  K
Sbjct: 67  VFRPHKRLERAMVSAAWGGAKSADVLLVLIDAHSGLSDEVCTMLDIVENIKQDKILVLNK 126

Query: 329 SD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D         L +   E        +IS+ +G G ++L++ + +++       P    S
Sbjct: 127 IDTVAKLSLLALTAQINERVKFLQTFMISALSGSGCKDLLHALSTMMQRGPWYYPEDQVS 186

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+++
Sbjct: 187 DMPMRQLAAEITREKLFLRLHDE 209


>gi|313665394|ref|YP_004047265.1| GTP-binding protein Era [Mycoplasma leachii PG50]
 gi|312949205|gb|ADR23801.1| GTP-binding protein Era [Mycoplasma leachii PG50]
          Length = 301

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 25/215 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + ++IVT+ P TTR+ +   L  +  Y +   DT G+  T
Sbjct: 9   VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDQYQIVFIDTPGVHTT 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFI--FIGTKSDL- 331
              ++K          ++ D+IL L         N    +   KN+D     + TK+D  
Sbjct: 69  KKQLDKVLNTSALKSTKDVDVILFLAPSDEVIGKNDLFLLKQIKNLDVFKILVITKADSV 128

Query: 332 -----------YSTYTEEYD--HLISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHK 377
                      +S Y +++D   + SS T   +E+L+  I + L  N ++     I + +
Sbjct: 129 TKEQLILKANEWSAYQDQFDEIIITSSITNLNIEKLLELIVNNLSDNDYQFYDDDILTDQ 188

Query: 378 RHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRL 411
              + + + +R  + + +  E    + ++ E+L  
Sbjct: 189 SDRFMIKEIIRENILLKTGQEVPHSVAVLVEHLEQ 223


>gi|299769158|ref|YP_003731184.1| GTP-binding protein Era [Acinetobacter sp. DR1]
 gi|298699246|gb|ADI89811.1| GTP-binding protein Era [Acinetobacter sp. DR1]
          Length = 342

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 78/210 (37%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +
Sbjct: 42  VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 101

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKN--IDFIFIGTKSDLYS 333
              + K   +     + + +L+L + +      N    +   KN  +  I +  K+D + 
Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVIDAYKWTQNDDLVLEKLKNAEMPVILVINKADTFE 161

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +    +               S+  G  LE L   I+  L  +     F   + +  
Sbjct: 162 DKRDILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQAPLYSFDQITDRSE 221

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M  L E +   D+ +   
Sbjct: 222 RFLASEIIREKIMRQLGE-ELPYDLTVQIE 250


>gi|262278197|ref|ZP_06055982.1| GTP-binding protein16S rRNA-binding,ribosome-associated GTPase
           [Acinetobacter calcoaceticus RUH2202]
 gi|262258548|gb|EEY77281.1| GTP-binding protein16S rRNA-binding,ribosome-associated GTPase
           [Acinetobacter calcoaceticus RUH2202]
          Length = 342

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 78/210 (37%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +
Sbjct: 42  VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 101

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKN--IDFIFIGTKSDLYS 333
              + K   +     + + +L+L + +      N    +   KN  +  I +  K+D + 
Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVIDAYKWTPNDDLVLEKLKNAEMPVILVINKADTFE 161

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +    +               S+  G  LE L   I+  L  +     F   + +  
Sbjct: 162 DKRDILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQAPLYSFDQITDRSE 221

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M  L E +   D+ +   
Sbjct: 222 RFLASEIIREKIMRQLGE-ELPYDLTVQIE 250


>gi|320094216|ref|ZP_08026020.1| GTP-binding protein Era [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319978841|gb|EFW10380.1| GTP-binding protein Era [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 396

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 88/234 (37%), Gaps = 22/234 (9%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+E   +  + E L  +  L+ D ++ I      E  R G+ + I+G  N GKS+L NAL
Sbjct: 63  EDEADADLGAFEALASVASLRQDAAAAIGVPDYPEDFRAGF-VSIVGRPNVGKSTLTNAL 121

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             + VAI +  P TTR  +   +  +GY + + DT G      ++ K         +   
Sbjct: 122 VGQKVAITSGRPETTRHNIRGIVHGDGYQLVLVDTPGYHRPRTLLGKRLNDMVREALAEV 181

Query: 300 DLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-----------LYSTYTEEY- 339
           D +L     + +                   I + TK D           L      E+ 
Sbjct: 182 DAVLFCLPADQRIGPGDQFIARELRGVKRPVIAVATKCDAVGRERVMKHLLAIERLGEWS 241

Query: 340 -DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
               +SS  G+G++ L + +   +       P    + +     +++ +R   +
Sbjct: 242 AIVPVSSVEGKGIDHLRDVLAQTVPASPPLYPEGDVTDESRDTLIAEFIREAAL 295


>gi|161353525|ref|YP_500179.2| GTP-binding protein Era [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|317374940|sp|Q2FY06|ERA_STAA8 RecName: Full=GTPase Era
 gi|329728341|gb|EGG64778.1| ribosome biogenesis GTPase Era [Staphylococcus aureus subsp. aureus
           21189]
          Length = 299

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   DT GI +  
Sbjct: 9   VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSDLY- 332
             +    +K     +   D I+ +   N +        I   KN       +  K DL  
Sbjct: 69  HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKIDLVH 128

Query: 333 ----STYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                   EEY           IS+  G  ++  I+ +K+ L    K  P    S     
Sbjct: 129 PDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGEIIR 196


>gi|159484917|ref|XP_001700498.1| ERA-like protein, small ras-type GTPase [Chlamydomonas reinhardtii]
 gi|158272250|gb|EDO98053.1| ERA-like protein, small ras-type GTPase [Chlamydomonas reinhardtii]
          Length = 439

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 81/202 (40%), Gaps = 19/202 (9%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII-------RNGYKIVILGHSNAGK 232
           EE+D +     +       + ++ +         E +       R+GY + ++G  NAGK
Sbjct: 113 EEDDEEALFFADKEKFSKTILDETNPFYQPALTDEDLAEDPPGHRSGY-VAVIGKPNAGK 171

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKR 291
           S+L NAL  + ++IVT  P TTR  +   L    Y + + DT G+ E      E+  +  
Sbjct: 172 STLINALVGQKLSIVTYKPQTTRHRVMGILSERDYQMILFDTPGVIEKKRTKLEERMMAA 231

Query: 292 TFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYSTYTEEYDHLI 343
               ++ ++ I+ + +   K + +                 +  K+DL S   E+   + 
Sbjct: 232 VVHSIKESEAIIAVVDSADKPKEALAMFQPGEGWNGPPMAVLLNKADLLSE--EQVVFVG 289

Query: 344 SSFTGEGLEELINKIKSILSNK 365
           S+   +GL  L     S L   
Sbjct: 290 SAEHKDGLGALRAWAVSRLPEG 311


>gi|307564581|ref|ZP_07627121.1| GTP-binding protein Era [Prevotella amnii CRIS 21A-A]
 gi|307346739|gb|EFN92036.1| GTP-binding protein Era [Prevotella amnii CRIS 21A-A]
          Length = 293

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTDNAQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKN-----IDFIFIGTKSDL--- 331
             +++  ++ +   + +AD++L + ++  + KK I F        I  I +  K D    
Sbjct: 67  YKMQEMMLQFSESALADADILLYVTDVVEDPKKNIDFLDKVSKMQIPVILLINKIDESDQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                     +S         IS+    G + L+ +I  +L  
Sbjct: 127 QRLVMLVDIWHSLLPNAEILPISAQNKFGTDILLKRIYELLPE 169


>gi|187250683|ref|YP_001875165.1| small GTP-binding protein [Elusimicrobium minutum Pei191]
 gi|186970843|gb|ACC97828.1| Small GTP-binding protein [Elusimicrobium minutum Pei191]
          Length = 377

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 10/150 (6%)

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKE 287
           N GKSSLFNALA +  AIV   PGTT D + + +++EG   V + DT GI +    + + 
Sbjct: 2   NVGKSSLFNALAGRAQAIVDSTPGTTTDPVRLIIEIEGLGPVVLLDTGGIDDKSTKLGER 61

Query: 288 GIKRTFLEVENADLILLLKEIN-------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
            + ++   V   DL LL+   N          E    K I  I I  KSDL     +  D
Sbjct: 62  RVLKSVNAVNQIDLALLVFTDNNFGPYEQDFLETIKAKKIPVILIHNKSDLTPLKLKIED 121

Query: 341 HLISSF--TGEGLEELINKIKSILSNKFKK 368
           H I  F         ++  +K++L+ + KK
Sbjct: 122 HEIIDFSAKNNNTAPILEAVKTVLNKQNKK 151


>gi|184159115|ref|YP_001847454.1| GTP-binding protein Era [Acinetobacter baumannii ACICU]
 gi|183210709|gb|ACC58107.1| GTPase [Acinetobacter baumannii ACICU]
          Length = 342

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 77/210 (36%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +
Sbjct: 42  VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 101

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + K   +     + + +L+L + +        ++   K    ++  I +  K+D + 
Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVIDAQKWTQNDDLVLEKLKNADMPVILVINKADTFG 161

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E    +               S+  G  LE L   I+  L  +         + +  
Sbjct: 162 DKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSIDQITDRSE 221

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M  L E +   D+ +   
Sbjct: 222 RFLASEIIREKIMRQLGE-ELPYDLTVQIE 250


>gi|42560997|ref|NP_975448.1| GTP-binding protein Era [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|42492494|emb|CAE77090.1| GTP-BINDING PROTEIN ERA HOMOLOG [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301320412|gb|ADK69055.1| GTP-binding protein Era [Mycoplasma mycoides subsp. mycoides SC
           str. Gladysdale]
          Length = 301

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 96/215 (44%), Gaps = 25/215 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + ++IVT+ P TTR+ +   L  +  Y +   DT G+  +
Sbjct: 9   VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDQYQIVFIDTPGVHTS 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFI--FIGTKSD-- 330
              ++K          ++ D+IL L         N    +   KN+D     + TK+D  
Sbjct: 69  KKQLDKFLNTSALKSTKDVDVILFLAPSDEVIGKNDLFLLKQIKNLDVFKILVITKADNV 128

Query: 331 ----------LYSTYTEEYD--HLISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHK 377
                      +S+Y +++D   + SS T   +E+L+  I + L  N ++     I + +
Sbjct: 129 TKEQLILKANEWSSYQDQFDEIIITSSITNLNIEKLLELIVNNLSDNDYQFYDDDILTDQ 188

Query: 378 RHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRL 411
              + + + +R  + + +  E    + ++ E+L  
Sbjct: 189 SDRFMIKEIIRENILLKTGQEVPHSVAVLVEHLEQ 223


>gi|313205716|ref|YP_004044893.1| GTP-binding protein era [Riemerella anatipestifer DSM 15868]
 gi|312445032|gb|ADQ81387.1| GTP-binding protein Era [Riemerella anatipestifer DSM 15868]
 gi|315022889|gb|EFT35913.1| GTP-binding protein Era [Riemerella anatipestifer RA-YM]
 gi|325336843|gb|ADZ13117.1| GTPase [Riemerella anatipestifer RA-GD]
          Length = 291

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 83/207 (40%), Gaps = 21/207 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L N L  + +AIVT    TTR  +    +     +  SDT G+ +  
Sbjct: 7   VNIVGKPNAGKSTLLNQLMGEKLAIVTKKAQTTRHRIFGIYNEPDLQIVFSDTPGVLDPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIF--IGTKSDL--- 331
             ++++ +      +++AD+ L + ++  K       I     I      +  K D    
Sbjct: 67  YGLQEKMMDFVKDSLQDADVFLFIVDVTDKDAPSEFLIEKLNKIPVPVLILINKIDQTNQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                     +    +     IS+  G   + ++ K+KS+L            + K   +
Sbjct: 127 EELEKSMHFWHEQIPKAEILPISALEGFNTDVILPKLKSLLPENPPYYDKEQFTDKSERF 186

Query: 382 HLSQTVRY-LEMASLNEKDCGLDIIAE 407
            +++ +R  + +    E    ++++ E
Sbjct: 187 FVNEAIREKILLNYEKEIPYSVEVVTE 213


>gi|242281264|ref|YP_002993393.1| GTP-binding protein Era [Desulfovibrio salexigens DSM 2638]
 gi|242124158|gb|ACS81854.1| GTP-binding protein Era [Desulfovibrio salexigens DSM 2638]
          Length = 305

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 86/233 (36%), Gaps = 33/233 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + ++G  NAGKS+L N    + VAIV+  P TTR+ ++  L  E   V   DT GI   
Sbjct: 9   WVALIGPPNAGKSTLMNHYLGQKVAIVSPKPQTTRNRISGILSDENSQVVFLDTPGIHRM 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI----------------------NSKKEISFPK 318
              + +  +   +  + NAD I++L +                        S+K++    
Sbjct: 69  RGKMNRFLLDSAWEALGNADAIVVLFDAALYAAKPHLMEQELAPVVKPVNQSRKKLFVAV 128

Query: 319 NIDFIFIGTKSDLY------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           N           L         + E     +S+  G+G + L+ K+   L       P  
Sbjct: 129 NKVDKVKDKAKLLPVMEKAQELWPEAEFIPVSALKGDGADVLLEKVIETLPEGAPMFPED 188

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEK-----DCGLDIIAENLRLASVSLGKIT 420
             S     +  ++TVR     SL ++        ++   E      V++G I 
Sbjct: 189 QVSTVPMRFMAAETVREKLFMSLQQELPYSTAVEIEFWTEEPERNLVNIGAII 241


>gi|331086300|ref|ZP_08335380.1| hypothetical protein HMPREF0987_01683 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406066|gb|EGG85589.1| hypothetical protein HMPREF0987_01683 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 405

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 22/176 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSSL NAL  +++AIV+DI GTT D +   ++L     V + DT G
Sbjct: 10  ERLHIGIFGKRNAGKSSLINALTGQNLAIVSDIKGTTTDPVLKSMELLPLGPVVLIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTK 328
           + +   + E   +++T+  +   D+ +L+ +     ++++++       K I ++    K
Sbjct: 70  LDDHGPLGELR-VQKTYQMLNKTDIAILVVDGTIGMTEEDLALLEQIQKKQIPYVIAFNK 128

Query: 329 SDL------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            DL              T        IS+ +G  +  L + + +I  ++  KLP  
Sbjct: 129 CDLCPASESQMPDTTTDTSKNGSAISISAASGFQISALKDLLGAIQPSEETKLPIV 184


>gi|315604800|ref|ZP_07879859.1| GTP-binding protein Era [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313471|gb|EFU61529.1| GTP-binding protein Era [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 402

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 88/234 (37%), Gaps = 22/234 (9%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E+E+  +  + E L  +  L+ D ++ I      E  R G+ + I+G  N GKS+L NAL
Sbjct: 69  EDEEDADLDAFEALTSLASLREDAAATIEVPDFPEDFRAGF-VSIVGRPNVGKSTLTNAL 127

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
               +AI +  P TTR  +   +  + Y + + DT G      ++ K         +   
Sbjct: 128 VGAKIAITSGRPETTRHNIRGIVHGDNYQLVLVDTPGYHRPRTLLGKRLNDMVREALSEV 187

Query: 300 DLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-----------LYSTYTEEY- 339
           D++L     + +                   I + TK D           L      E+ 
Sbjct: 188 DVVLFCLPADQRIGPGDQFIARELRSVKRPIIAVATKCDAVARERVMKHLLAIEKLGEWA 247

Query: 340 -DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
               +SS  G+G++ L + +   +       P    + +     +++ +R   +
Sbjct: 248 AIVPVSSVEGKGIDHLRDVLAQTVPLSPPLYPDGDVTDESRDTLIAEFIREAAL 301


>gi|261253899|ref|ZP_05946472.1| GTP-binding protein Era [Vibrio orientalis CIP 102891]
 gi|260937290|gb|EEX93279.1| GTP-binding protein Era [Vibrio orientalis CIP 102891]
          Length = 325

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 23/203 (11%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            Q    E    G+ + I+G  N GKS+L N +  + ++I +  P TTR  +        Y
Sbjct: 21  EQATSPENQHCGF-VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDY 79

Query: 268 LVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----N 319
                DT G+  E    + +   +     + + +L+  L +     +  E+   K    N
Sbjct: 80  QAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDGTHWTADDEMVLTKLQKSN 139

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNK 365
              +    K D+     +   H+               S+  G+ ++ L   ++  L   
Sbjct: 140 FPVVLCVNKVDVVQDRNDVMMHMQEMSSKMDFVDVVPISAKHGKNIDVLRKHVREHLPKA 199

Query: 366 FKKLPFSIPSHKRHLYHLSQTVR 388
               P    + +   +  S+ VR
Sbjct: 200 THHFPEEYVTDRSQRFMASEIVR 222


>gi|269941057|emb|CBI49441.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 299

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   DT GI +  
Sbjct: 9   VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSDLY- 332
             +    +K     +   D I+ +   N +        I   KN       +  K DL  
Sbjct: 69  HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKIDLVH 128

Query: 333 ----STYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                   EEY           IS+  G  ++  I+ +K+ L    K  P    S     
Sbjct: 129 PDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGEIIR 196


>gi|329733159|gb|EGG69496.1| ribosome biogenesis GTPase Era [Staphylococcus aureus subsp. aureus
           21193]
          Length = 299

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   DT GI +  
Sbjct: 9   VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSDLY- 332
             +    +K     +   D I+ +   N +        I   KN       +  K DL  
Sbjct: 69  HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKIDLVH 128

Query: 333 ----STYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                   EEY           IS+  G  ++  I+ +K+ L    K  P    S     
Sbjct: 129 PDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGEIIR 196


>gi|326797796|ref|YP_004315615.1| GTP-binding protein Era-like-protein [Sphingobacterium sp. 21]
 gi|326548560|gb|ADZ76945.1| GTP-binding protein Era-like-protein [Sphingobacterium sp. 21]
          Length = 292

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L N+L  + ++IVT    TTR  +   ++ E Y +  SDT G+ +  
Sbjct: 8   VSIVGKPNAGKSTLMNSLVGEKMSIVTPKAQTTRHRILGIVNEEDYQIVFSDTPGVIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSD 330
             +++  +      + +AD+IL + +IN K       E     +   + +  K D
Sbjct: 68  YSLQESMMNFVHGSLVDADIILFVTDINEKYDETDVIEKLQKTDSPVVVLVNKID 122


>gi|226940390|ref|YP_002795464.1| GTP-binding protein Era [Laribacter hongkongensis HLHK9]
 gi|226715317|gb|ACO74455.1| GTP-binding protein [Laribacter hongkongensis HLHK9]
          Length = 298

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 28/197 (14%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R G+ + I+G  N GKS+L N L  + ++I +    TTR  +T     E       DT 
Sbjct: 9   YRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRHRVTGIETREDAQFIFVDTP 67

Query: 276 GI----RETDDIVEKEGIKRTFLEVENADLILLLKEIN----SKKEI--SFPKNIDFIFI 325
           G     R   + V  + +++T     + D +L++ E      + +E+    PKN   + +
Sbjct: 68  GFQTRHRNALNDVLNQSVRQTLA---DVDCVLMVLEAGKLGPADQEVLNLLPKNRPVVAV 124

Query: 326 GTKSDLYSTYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             KSD      E                   + +  G+ L+EL+  ++  L       P 
Sbjct: 125 INKSDRLKDKAEMAGFLVKVSEAFAFADIIPVCAKHGQRLDELLKLVQPHLPQSVPLYPE 184

Query: 372 SIPSHKRHLYHLSQTVR 388
            + + K   +  ++ VR
Sbjct: 185 DMVTDKNEKFLAAEIVR 201


>gi|223040568|ref|ZP_03610840.1| HydF [Campylobacter rectus RM3267]
 gi|222878203|gb|EEF13312.1| HydF [Campylobacter rectus RM3267]
          Length = 394

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 16/169 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
             + I G  N GKSS+ N L+ +  +IV+D+ GTT D +   +++ G     + DTAG+ 
Sbjct: 9   IAVGIFGRRNVGKSSIMNMLSNQSASIVSDVAGTTTDTVQKSIEIHGLGAATLFDTAGVD 68

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFPK-----NIDFIFIGTKSDL 331
           +  ++ EK  I +T   +EN D+ +L+ E N  SK E          N  F+ +  K DL
Sbjct: 69  DAGELGEKR-ILKTNETIENIDIAVLVVENNEFSKFESELIDKFKSLNKPFLLLVNKCDL 127

Query: 332 YSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
             T  E  +          S+ T  GLE +   +  I     K      
Sbjct: 128 KETKGEFLNLINPFKFIKTSAKTKLGLELIYEGLAEISKQISKDSDDLF 176


>gi|27468172|ref|NP_764809.1| GTP-binding protein Era [Staphylococcus epidermidis ATCC 12228]
 gi|251810984|ref|ZP_04825457.1| GTP-binding protein Era [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876007|ref|ZP_06284874.1| GTP-binding protein Era [Staphylococcus epidermidis SK135]
 gi|293366472|ref|ZP_06613149.1| GTP-binding protein Era [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|38257330|sp|Q8CP21|ERA_STAES RecName: Full=GTPase Era
 gi|27315718|gb|AAO04853.1|AE016748_87 GTP-binding protein (Era/TrmE family) [Staphylococcus epidermidis
           ATCC 12228]
 gi|251805494|gb|EES58151.1| GTP-binding protein Era [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295032|gb|EFA87559.1| GTP-binding protein Era [Staphylococcus epidermidis SK135]
 gi|291319241|gb|EFE59610.1| GTP-binding protein Era [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725360|gb|EGG61843.1| ribosome biogenesis GTPase Era [Staphylococcus epidermidis VCU144]
 gi|329735268|gb|EGG71560.1| ribosome biogenesis GTPase Era [Staphylococcus epidermidis VCU045]
 gi|329737216|gb|EGG73470.1| ribosome biogenesis GTPase Era [Staphylococcus epidermidis VCU028]
          Length = 299

 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   DT GI +  
Sbjct: 9   VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-- 331
             +    ++     +   D I+ +  +N           E+          +  K DL  
Sbjct: 69  HKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKNVKTPIFLVLNKIDLVH 128

Query: 332 ----------YSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     Y +Y +  D   IS+  G  ++  I+ +KS L    K  P +  S     
Sbjct: 129 PDTLMPKIEQYQSYMDFTDIIPISALEGLNVDHFIDVLKSFLPEGPKYYPDNQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 189 FVVSEIIR 196


>gi|332875944|ref|ZP_08443730.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6014059]
 gi|323519011|gb|ADX93392.1| GTP-binding protein Era [Acinetobacter baumannii TCDC-AB0715]
 gi|332735810|gb|EGJ66851.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6014059]
          Length = 340

 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 77/210 (36%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +
Sbjct: 40  VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 99

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + K   +     + + +L+L + +        ++   K    ++  I +  K+D + 
Sbjct: 100 VRAINKMMNRAAHSALRDVNLVLFVIDAQKWTQNDDLVLEKLKNADMPVILVINKADTFG 159

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E    +               S+  G  LE L   I+  L  +         + +  
Sbjct: 160 DKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSIDQITDRSE 219

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M  L E +   D+ +   
Sbjct: 220 RFLASEIIREKIMRQLGE-ELPYDLTVQIE 248


>gi|225387778|ref|ZP_03757542.1| hypothetical protein CLOSTASPAR_01548 [Clostridium asparagiforme
           DSM 15981]
 gi|225046112|gb|EEG56358.1| hypothetical protein CLOSTASPAR_01548 [Clostridium asparagiforme
           DSM 15981]
          Length = 303

 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 69/199 (34%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + +AI +D P TTR+ +      E   +   DT GI +  
Sbjct: 12  VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFLDTPGIHKAK 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSDLYS 333
           + + +  +      +   D+IL L E ++          E         I +  K D   
Sbjct: 72  NKLGEYMVTVAERTLTEVDVILWLVEPSTFIGAGERHIAEQLNKVKTPVILVINKIDTVK 131

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E    +               S+      + L   I   L    +       + +  
Sbjct: 132 KQEEILTFIDAYKDVCQFAEIVPLSALKDRNTDLLTELIFKYLPYGPQFYDEDTVTDQPM 191

Query: 380 LYHLSQTVRYLEMASLNEK 398
               ++ +R   +  L+++
Sbjct: 192 RQIAAELIREKALRLLDDE 210


>gi|58584268|ref|YP_197841.1| GTP-binding protein Era [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58418584|gb|AAW70599.1| GTPase [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 294

 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 23/165 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G  NAGKS+L N++  K +AIVT    TTR  +          +  +D+ GI   +
Sbjct: 9   VTIAGLPNAGKSTLINSITGKKIAIVTPKVQTTRTQIRGIAIYNETQIIFTDSPGIFSAE 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFPK---------NIDFIFIGTKSDL 331
             +EK  +K  +  ++  D+ILLL + +S  K I   K             IF+  K DL
Sbjct: 69  TKLEKALVKSAWSAIKGDDVILLLIDASSYLKNIERIKTIFTRLRHTKTKCIFVINKIDL 128

Query: 332 YST-------------YTEEYDHLISSFTGEGLEELINKIKSILS 363
                           Y  +    IS+   +GL +L++ +  +  
Sbjct: 129 VKKPELKMTYKHLDLLYKLKKIFTISALKSDGLSDLMDYLSEVAP 173


>gi|306821539|ref|ZP_07455139.1| GTP-binding protein Era [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550433|gb|EFM38424.1| GTP-binding protein Era [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 316

 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G SN GKS+L NA+  + +AI +D P TTR  +    + E   +   DT G+++  
Sbjct: 26  VSIVGRSNVGKSTLLNAIIGEKIAITSDKPQTTRSRIKGIYNDEESQIIFLDTPGVQKPK 85

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS---- 329
           + +     K   L    AD+I+ + + + K         E         I +  K     
Sbjct: 86  NKLGSYMAKEVSLSSSTADVIVYVVDESEKIGRLDHNIIENLKKTKQPKILVLNKIDKLS 145

Query: 330 -----DLYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                D+   Y E    +    I +     + ELI  IK  L    K  P  + + + + 
Sbjct: 146 EDKIFDIIKMYDEIGIFDDIVPICAIKKRNVVELIKTIKKYLVYSAKFFPDDMTTDQSNK 205

Query: 381 YHLSQTVR 388
             +S+ +R
Sbjct: 206 VMISEIIR 213


>gi|15924557|ref|NP_372091.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927147|ref|NP_374680.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus N315]
 gi|21283248|ref|NP_646336.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus MW2]
 gi|49483815|ref|YP_041039.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486402|ref|YP_043623.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651960|ref|YP_186464.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus COL]
 gi|87161238|ref|YP_494222.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|148268051|ref|YP_001246994.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus JH9]
 gi|150394119|ref|YP_001316794.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus JH1]
 gi|151221682|ref|YP_001332504.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156979885|ref|YP_001442144.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509795|ref|YP_001575454.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140013|ref|ZP_03564506.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253316042|ref|ZP_04839255.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253733183|ref|ZP_04867348.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006353|ref|ZP_05144954.2| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425692|ref|ZP_05602116.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428353|ref|ZP_05604751.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430990|ref|ZP_05607370.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433678|ref|ZP_05610036.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus E1410]
 gi|257436592|ref|ZP_05612636.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus M876]
 gi|257793643|ref|ZP_05642622.1| GTP-binding protein Era [Staphylococcus aureus A9781]
 gi|258411057|ref|ZP_05681337.1| GTP-binding protein Era [Staphylococcus aureus A9763]
 gi|258420139|ref|ZP_05683094.1| GTP-binding protein Era [Staphylococcus aureus A9719]
 gi|258423995|ref|ZP_05686877.1| GTP-binding protein Era [Staphylococcus aureus A9635]
 gi|258437399|ref|ZP_05689383.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|258443605|ref|ZP_05691944.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258446812|ref|ZP_05694966.1| GTP-binding protein Era [Staphylococcus aureus A6300]
 gi|258448726|ref|ZP_05696838.1| GTP-binding protein Era [Staphylococcus aureus A6224]
 gi|258450604|ref|ZP_05698666.1| GTP-binding protein Era [Staphylococcus aureus A5948]
 gi|258453543|ref|ZP_05701521.1| GTP-binding protein Era [Staphylococcus aureus A5937]
 gi|262051227|ref|ZP_06023451.1| hypothetical protein SA930_1658 [Staphylococcus aureus 930918-3]
 gi|269203195|ref|YP_003282464.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus ED98]
 gi|282893068|ref|ZP_06301302.1| GTP-binding protein Era [Staphylococcus aureus A8117]
 gi|282904149|ref|ZP_06312037.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus C160]
 gi|282905976|ref|ZP_06313831.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908886|ref|ZP_06316704.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911205|ref|ZP_06319007.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914374|ref|ZP_06322160.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus M899]
 gi|282916837|ref|ZP_06324595.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus D139]
 gi|282919343|ref|ZP_06327078.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus C427]
 gi|282920116|ref|ZP_06327841.1| GTP-binding protein Era [Staphylococcus aureus A9765]
 gi|282924668|ref|ZP_06332336.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus C101]
 gi|282928200|ref|ZP_06335805.1| GTP-binding protein Era [Staphylococcus aureus A10102]
 gi|283958331|ref|ZP_06375782.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293503448|ref|ZP_06667295.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510465|ref|ZP_06669171.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus M809]
 gi|293531005|ref|ZP_06671687.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus M1015]
 gi|294848598|ref|ZP_06789344.1| GTP-binding protein Era [Staphylococcus aureus A9754]
 gi|295406690|ref|ZP_06816495.1| GTP-binding protein Era [Staphylococcus aureus A8819]
 gi|295428145|ref|ZP_06820777.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275811|ref|ZP_06858318.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus MR1]
 gi|297207714|ref|ZP_06924149.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245728|ref|ZP_06929593.1| GTP-binding protein Era [Staphylococcus aureus A8796]
 gi|297590889|ref|ZP_06949527.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus MN8]
 gi|300911795|ref|ZP_07129238.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380844|ref|ZP_07363504.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|54037042|sp|P64085|ERA_STAAN RecName: Full=GTPase Era
 gi|54037043|sp|P64086|ERA_STAAW RecName: Full=GTPase Era
 gi|54040763|sp|P64084|ERA_STAAM RecName: Full=GTPase Era
 gi|56748908|sp|Q6G900|ERA_STAAS RecName: Full=GTPase Era
 gi|56748919|sp|Q6GGD3|ERA_STAAR RecName: Full=GTPase Era
 gi|81694385|sp|Q5HFJ3|ERA_STAAC RecName: Full=GTPase Era
 gi|123485633|sp|Q2FGF6|ERA_STAA3 RecName: Full=GTPase Era
 gi|189037668|sp|A7X2W5|ERA_STAA1 RecName: Full=GTPase Era
 gi|189037669|sp|A6U239|ERA_STAA2 RecName: Full=GTPase Era
 gi|189037670|sp|A5IT95|ERA_STAA9 RecName: Full=GTPase Era
 gi|189037671|sp|A6QHB0|ERA_STAAE RecName: Full=GTPase Era
 gi|189037672|sp|A8Z4A6|ERA_STAAT RecName: Full=GTPase Era
 gi|13701365|dbj|BAB42659.1| bex [Staphylococcus aureus subsp. aureus N315]
 gi|14247338|dbj|BAB57729.1| GTP-binding protein Era homolog [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21204688|dbj|BAB95384.1| bex [Staphylococcus aureus subsp. aureus MW2]
 gi|49241944|emb|CAG40639.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244845|emb|CAG43306.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57286146|gb|AAW38240.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus COL]
 gi|87127212|gb|ABD21726.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|147741120|gb|ABQ49418.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus JH9]
 gi|149946571|gb|ABR52507.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus JH1]
 gi|150374482|dbj|BAF67742.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156722020|dbj|BAF78437.1| GTP-binding protein Era homolog [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160368604|gb|ABX29575.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728723|gb|EES97452.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271386|gb|EEV03532.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275194|gb|EEV06681.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278420|gb|EEV09056.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281771|gb|EEV11908.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus E1410]
 gi|257283943|gb|EEV14066.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus M876]
 gi|257787615|gb|EEV25955.1| GTP-binding protein Era [Staphylococcus aureus A9781]
 gi|257840207|gb|EEV64671.1| GTP-binding protein Era [Staphylococcus aureus A9763]
 gi|257843850|gb|EEV68244.1| GTP-binding protein Era [Staphylococcus aureus A9719]
 gi|257845616|gb|EEV69648.1| GTP-binding protein Era [Staphylococcus aureus A9635]
 gi|257848604|gb|EEV72592.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257851011|gb|EEV74954.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257854387|gb|EEV77336.1| GTP-binding protein Era [Staphylococcus aureus A6300]
 gi|257858004|gb|EEV80893.1| GTP-binding protein Era [Staphylococcus aureus A6224]
 gi|257861762|gb|EEV84561.1| GTP-binding protein Era [Staphylococcus aureus A5948]
 gi|257864274|gb|EEV87024.1| GTP-binding protein Era [Staphylococcus aureus A5937]
 gi|259160864|gb|EEW45884.1| hypothetical protein SA930_1658 [Staphylococcus aureus 930918-3]
 gi|262075485|gb|ACY11458.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus ED98]
 gi|282313503|gb|EFB43898.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus C101]
 gi|282317153|gb|EFB47527.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus C427]
 gi|282319324|gb|EFB49676.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus D139]
 gi|282321555|gb|EFB51880.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus M899]
 gi|282324900|gb|EFB55210.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327150|gb|EFB57445.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331268|gb|EFB60782.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590007|gb|EFB95089.1| GTP-binding protein Era [Staphylococcus aureus A10102]
 gi|282594464|gb|EFB99449.1| GTP-binding protein Era [Staphylococcus aureus A9765]
 gi|282595767|gb|EFC00731.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus C160]
 gi|282764386|gb|EFC04512.1| GTP-binding protein Era [Staphylococcus aureus A8117]
 gi|283470845|emb|CAQ50056.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus ST398]
 gi|283790480|gb|EFC29297.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817249|gb|ADC37736.1| GTP-binding protein Era [Staphylococcus aureus 04-02981]
 gi|290920273|gb|EFD97339.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus M1015]
 gi|291095114|gb|EFE25379.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466829|gb|EFF09349.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus M809]
 gi|294824624|gb|EFG41047.1| GTP-binding protein Era [Staphylococcus aureus A9754]
 gi|294968437|gb|EFG44461.1| GTP-binding protein Era [Staphylococcus aureus A8819]
 gi|295128503|gb|EFG58137.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887731|gb|EFH26629.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177379|gb|EFH36631.1| GTP-binding protein Era [Staphylococcus aureus A8796]
 gi|297575775|gb|EFH94491.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus MN8]
 gi|298694849|gb|ADI98071.1| GTP-binding protein [Staphylococcus aureus subsp. aureus ED133]
 gi|300886041|gb|EFK81243.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333243|gb|ADL23436.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|304340571|gb|EFM06505.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312437964|gb|ADQ77035.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829955|emb|CBX34797.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315129845|gb|EFT85835.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195469|gb|EFU25856.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198738|gb|EFU29066.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140548|gb|EFW32402.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144085|gb|EFW35854.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323440465|gb|EGA98177.1| GTP-binding protein Era [Staphylococcus aureus O11]
 gi|323443239|gb|EGB00857.1| GTP-binding protein Era [Staphylococcus aureus O46]
 gi|329314243|gb|AEB88656.1| GTP-binding protein era -like protein [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727411|gb|EGG63867.1| ribosome biogenesis GTPase Era [Staphylococcus aureus subsp. aureus
           21172]
          Length = 299

 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   DT GI +  
Sbjct: 9   VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSDLY- 332
             +    +K     +   D I+ +   N +        I   KN       +  K DL  
Sbjct: 69  HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKIDLVH 128

Query: 333 ----STYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                   EEY           IS+  G  ++  I+ +K+ L    K  P    S     
Sbjct: 129 PDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGEIIR 196


>gi|256384053|gb|ACU78623.1| GTP-binding protein Era [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256384885|gb|ACU79454.1| GTP-binding protein Era [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296456013|gb|ADH22248.1| GTP-binding protein Era [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 301

 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 98/215 (45%), Gaps = 25/215 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + ++IVT+ P TTR+ +   L  +  Y +   DT G+  +
Sbjct: 9   VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDQYQIVFIDTPGVHTS 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK-----NIDFIFIGTKSDL- 331
              ++K          ++ D+IL L   +    K ++   K     ++  I + TK+D  
Sbjct: 69  KKQLDKFLNTSALKSTKDVDVILFLAPSDEVIGKNDLFLLKQIENLDVFKILVITKADSV 128

Query: 332 -----------YSTYTEEYD--HLISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHK 377
                      +S+Y +++D   + SS T   +E+L+  I + L  N ++     I + +
Sbjct: 129 TKEQLILKANEWSSYQDQFDEIIITSSITNLNIEKLLELIVNNLSDNDYQFYDDDILTDQ 188

Query: 378 RHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRL 411
              + + + +R  + + +  E    + ++ E+L  
Sbjct: 189 SDRFMIKEIIRENILLKTGQEVPHSVAVLVEHLEQ 223


>gi|148284571|ref|YP_001248661.1| GTP-binding protein EngA [Orientia tsutsugamushi str. Boryong]
 gi|229784136|sp|A5CDT2|DER_ORITB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|146740010|emb|CAM80087.1| GTP-binding protein [Orientia tsutsugamushi str. Boryong]
          Length = 454

 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 92/198 (46%), Gaps = 22/198 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+LFN L+ ++ +IV D+PG TRD      +L    + + DT G+    
Sbjct: 6   VALVGKPNVGKSTLFNRLSLREKSIVHDLPGITRDRKYAKANLFS-DLIVVDTPGLEFAA 64

Query: 282 DIV-EKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNID----FIFIGTKSD 330
               E   ++++ + +  A++I  + +         ++  +  +  +     I +  K++
Sbjct: 65  AGSLEFNMMQQSLVAINEANIICFVVDAITGILPIDEECANLIRKHNKQSSTILVINKTE 124

Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                 + Y          IS+  G+G+ EL + I++ILS   KK+     ++ +  Y+ 
Sbjct: 125 KPIILDKSYYKLGFSESICISAKHGQGIYELGDIIQNILSED-KKINVLTTTNTKCEYN- 182

Query: 384 SQTVRYLEMASLNEKDCG 401
            Q    L++A +   +CG
Sbjct: 183 -QQCPELQLAIVGRPNCG 199



 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 62/129 (48%), Gaps = 11/129 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  N GKS+  NA+  ++  +     G TR+ + +D    G L+++ DTAG+R+
Sbjct: 188 LQLAIVGRPNCGKSTFINAILNEERVLTGPESGLTRNSVEVDWKYCGQLIRLVDTAGVRK 247

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
            + +    E   +  TF  +  A++++++ +      ++++S       +    + +  K
Sbjct: 248 KNAVTQSCELLSVNDTFKTIRFANIVIVMIDATRGLEQQDLSIISYAVNEGRGIVLVVNK 307

Query: 329 SDLYSTYTE 337
            DL     E
Sbjct: 308 CDLIKKKEE 316


>gi|294675552|ref|YP_003576168.1| GTP-binding protein Era [Prevotella ruminicola 23]
 gi|294472154|gb|ADE81543.1| GTP-binding protein Era [Prevotella ruminicola 23]
          Length = 295

 Score = 89.9 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 83/189 (43%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++     +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTPEMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPK-----NIDFIFIGTKSDL--- 331
             +++  +  +   +++AD++L + ++  N +K + F       ++  + +  K D    
Sbjct: 67  YKLQESMLAFSESALQDADVLLYVTDVVENPEKNMDFLAKVQKLDMPVLLLINKIDELTG 126

Query: 332 ------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                       ++   +     IS+    G++ L+ +I+ +L            + K  
Sbjct: 127 GNAQLAAIVEKWHALLPKAEILPISAKNKFGVDMLLKRIQELLPESPAYFDKDQLTDKPA 186

Query: 380 LYHLSQTVR 388
            + +S+ +R
Sbjct: 187 RFFVSEIIR 195


>gi|89891790|ref|ZP_01203292.1| GTP-binding protein [Flavobacteria bacterium BBFL7]
 gi|89515945|gb|EAS18610.1| GTP-binding protein [Flavobacteria bacterium BBFL7]
          Length = 300

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I+T    TTR  +   ++ E + + +SDT GI +  
Sbjct: 12  VNIVGNPNVGKSTLMNALVGERLSIITSKAQTTRHRILGIVNGEDFQIVLSDTPGIIKPA 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--KEISFPK-----NIDFIFIGTKSDL--Y 332
             +++  ++      E+AD IL + E+  K  K  +F K      +  I +  K D    
Sbjct: 72  YKLQESMMEFVKNAFEDADCILYMVELGEKELKNEAFEKRLTYAEVPVIVLINKIDKGQA 131

Query: 333 STYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           S   E  +H            IS+    G+ +L+ +I  IL       P    + K   +
Sbjct: 132 SQLEEAVEHWKVRLPNAEIFAISALENFGVPQLMARIVEILPASPAFYPKDALTDKPERF 191

Query: 382 HLSQTVR 388
            +++++R
Sbjct: 192 FVNESIR 198


>gi|253732220|ref|ZP_04866385.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724009|gb|EES92738.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 299

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   DT GI +  
Sbjct: 9   VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSDLY- 332
             +    +K     +   D I+ +   N +        I   KN       +  K DL  
Sbjct: 69  HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKIDLVH 128

Query: 333 ----STYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                   EEY           IS+  G  ++  I+ +K+ L    K  P    S     
Sbjct: 129 PDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGEIIR 196


>gi|308375657|ref|ZP_07668083.1| putative ribosome-associated GTPase EngA [Mycobacterium
           tuberculosis SUMu007]
 gi|308380153|ref|ZP_07669129.1| putative ribosome-associated GTPase EngA [Mycobacterium
           tuberculosis SUMu011]
 gi|308345615|gb|EFP34466.1| putative ribosome-associated GTPase EngA [Mycobacterium
           tuberculosis SUMu007]
 gi|308362468|gb|EFP51319.1| putative ribosome-associated GTPase EngA [Mycobacterium
           tuberculosis SUMu011]
          Length = 262

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 27/175 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + ++G  N GKSSL N LA    ++V +  GTT D +   ++L G + +  DTAG+R   
Sbjct: 1   MALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRRKV 60

Query: 281 --DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD 330
                 E     RT   +++A++ ++L + +            +        +    K D
Sbjct: 61  GQASGHEFYASVRTHAAIDSAEVAIVLIDASQPLTEQDLRVISMVIEAGRALVLAYNKWD 120

Query: 331 LYSTYTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           L      E                    IS+ TG  + +L+  ++  L++   ++
Sbjct: 121 LVDEDRRELLQREIDRELVQVRWAQRVNISAKTGRAVHKLVPAMEDALASWDTRI 175


>gi|288905822|ref|YP_003431044.1| GTP-binding protein era [Streptococcus gallolyticus UCN34]
 gi|306831911|ref|ZP_07465066.1| GTP-binding protein Era [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|306834025|ref|ZP_07467146.1| GTP-binding protein Era [Streptococcus bovis ATCC 700338]
 gi|325978857|ref|YP_004288573.1| GTP-binding protein era [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732548|emb|CBI14120.1| GTP-binding protein era [Streptococcus gallolyticus UCN34]
 gi|304423813|gb|EFM26958.1| GTP-binding protein Era [Streptococcus bovis ATCC 700338]
 gi|304425837|gb|EFM28954.1| GTP-binding protein Era [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325178785|emb|CBZ48829.1| era, yqfH, sdgE, bex, rbaA GTP-binding protein era homolog
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 298

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 79/201 (39%), Gaps = 22/201 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 7   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDTEQIVFIDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKS---- 329
           + +    ++  +  +   + +L +   + K+        E      I  I +  K     
Sbjct: 67  NALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKVH 126

Query: 330 ---------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +E L+N +K  L   F+  P    +     
Sbjct: 127 PDQLLEQIDDFRSQMDFKEIVPISALQGNNVETLMNILKDNLEEGFQYFPEDQITDHPER 186

Query: 381 YHLSQTVRYLEMASLNEKDCG 401
           + +S+ +R  ++  L E++  
Sbjct: 187 FLVSEMIRE-KILKLTEQEVP 206


>gi|160895175|ref|ZP_02075948.1| hypothetical protein CLOL250_02735 [Clostridium sp. L2-50]
 gi|156863209|gb|EDO56640.1| hypothetical protein CLOL250_02735 [Clostridium sp. L2-50]
          Length = 301

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 77/202 (38%), Gaps = 22/202 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+L N L  + +AI +    TTR+ +      +   +   DT 
Sbjct: 5   YKSGF-VAIIGRPNVGKSTLMNQLIGQKIAITSSKAQTTRNRIQTVYTSDEGQIVFLDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGT 327
           GI    + + +  +K     +   D+++ + E  +          E         I +  
Sbjct: 64  GINRAKNKLGEYMLKVAEGTLNEVDVVMWIVEATTFIGAGERYIIEQLERVKTPIIIVVN 123

Query: 328 KSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D           STY +   H     +S+  G+  +ELI  +   L    +       
Sbjct: 124 KIDAVSEEEVFKAISTYKDACSHAEIVPVSALKGKNKDELIKTLFKYLPYGPQFYDEDTI 183

Query: 375 SHKRHLYHLSQTVRYLEMASLN 396
           + +     +S+ +R   +  L+
Sbjct: 184 TDQPERQIVSELIREQALRLLD 205


>gi|304319918|ref|YP_003853561.1| GTP-binding protein EngA [Parvularcula bermudensis HTCC2503]
 gi|303298821|gb|ADM08420.1| GTP-binding protein EngA [Parvularcula bermudensis HTCC2503]
          Length = 459

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 98/271 (36%), Gaps = 35/271 (12%)

Query: 98  ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL----ISSE---TEMQRRLS-MEG 149
            L     L  A  G    R     +    +A  LADL    I +    T     L+ M  
Sbjct: 53  TLIDTAGLEEAQQGSLQARM----RAGTEKAIGLADLSLFLIDARAGVTAQDEELAQMLR 108

Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209
            +G    +     +      ++    L   +   +     + + +    + + ++     
Sbjct: 109 SAGRPVIVVANKTEGRGEEGAYEAYRLGLGDPVPISAEHGEGMADLYQAVISKLAESGID 168

Query: 210 GKLGEI--------IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            ++ E          R   ++ I+G  NAGKS+L N L  +D  +     G TRD ++ +
Sbjct: 169 HQIKEEAETLAWDDPRKPLRLAIVGRPNAGKSTLVNQLLGEDRVLTGPEAGITRDTISAE 228

Query: 262 L----DLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE- 313
                D   + VK+ DTAG+R   +  D +EK  +  T   +  A+++ LL +     E 
Sbjct: 229 WRYVADDRDWPVKLFDTAGLRRRAKVQDKLEKLSVGDTLRAIRFAEVVALLIDATQPFEK 288

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTE 337
                  ++  +    + +  K DL     E
Sbjct: 289 QDLQIADLALKEGRALVIVANKWDLIDDKDE 319



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 17/160 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  N GKS+LFN LA + +A+V D PG TRD   I+       + + DTAG+ E
Sbjct: 3   IRLAIIGRPNVGKSTLFNRLAGRKLALVHDEPGVTRDRREIEATFGDLDLTLIDTAGLEE 62

Query: 280 TDDIVEK-EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330
                 +      T   +  ADL L L +  +          ++        I +  K++
Sbjct: 63  AQQGSLQARMRAGTEKAIGLADLSLFLIDARAGVTAQDEELAQMLRSAGRPVIVVANKTE 122

Query: 331 ------LYSTYTEEY--DHLISSFTGEGLEELINKIKSIL 362
                  Y  Y         IS+  GEG+ +L   + S L
Sbjct: 123 GRGEEGAYEAYRLGLGDPVPISAEHGEGMADLYQAVISKL 162


>gi|268610927|ref|ZP_06144654.1| small GTP-binding protein [Ruminococcus flavefaciens FD-1]
          Length = 399

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 11/161 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I   G  NAGKSS+ NA+  +++++V+D+ GTT D +T  ++L     V I DT G
Sbjct: 10  ERIHIGFFGRRNAGKSSVVNAVTGQELSVVSDVKGTTTDPVTKAMELLPLGPVVIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
             +   + E   +++T   +   DL +L+ + ++           I   K+I +I +  K
Sbjct: 70  FDDVGTLGEMR-VRKTKQILNRTDLAVLIVDNSTGLSDTDKQLIGIFKEKDIPYITVYNK 128

Query: 329 SDLYSTYT-EEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           SD+      +E +  +S+   E + EL   +  +   + ++
Sbjct: 129 SDIAPKADCKEGEISVSAVCRENIHELKEMMAHMTKRQGEE 169


>gi|326402426|ref|YP_004282507.1| GTP-binding protein Era [Acidiphilium multivorum AIU301]
 gi|325049287|dbj|BAJ79625.1| GTP-binding protein Era [Acidiphilium multivorum AIU301]
          Length = 295

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG  NAGKS+L N      V+IVT    TTR  ++  +   G  + + DT GI    
Sbjct: 8   VALLGRPNAGKSTLLNQAVGAKVSIVTPKAQTTRFRISGIVMRGGDQIVLVDTPGIFAPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
             +++  +   +  V  ADL  L+ +          +              I  K DL  
Sbjct: 68  RRLDRAMVAAAWEGVAGADLACLIVDAAKADPDDLAEPIEALAATGRPRWLILNKIDLLP 127

Query: 334 TYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                                +IS+   +G++ L++ + + +       P    + +   
Sbjct: 128 RDKLLPLAETLARQGGFAEVFMISALKRDGVDRLLDALAAAMPEGPHLYPEDELTDQTER 187

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++ VR      L ++
Sbjct: 188 MLAAELVREQIFLQLRDE 205


>gi|312868217|ref|ZP_07728417.1| ribosome biogenesis GTPase Era [Streptococcus parasanguinis F0405]
 gi|322389989|ref|ZP_08063528.1| GTP-binding protein Era [Streptococcus parasanguinis ATCC 903]
 gi|311095962|gb|EFQ54206.1| ribosome biogenesis GTPase Era [Streptococcus parasanguinis F0405]
 gi|321143302|gb|EFX38741.1| GTP-binding protein Era [Streptococcus parasanguinis ATCC 903]
          Length = 299

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKS---- 329
             +    ++  +  +   D +L +   +  +        E      +  I +  K     
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 330 ---------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +  LI+ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRSQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|311069130|ref|YP_003974053.1| GTP-binding protein Era [Bacillus atrophaeus 1942]
 gi|310869647|gb|ADP33122.1| GTP-binding protein Era [Bacillus atrophaeus 1942]
          Length = 301

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 22/198 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +   L         
Sbjct: 2   TNESFKSGF-VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIF 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISFPK----NIDFI 323
            DT GI +    +    +K     ++  DLIL +           E    K    +    
Sbjct: 61  IDTPGIHKPKHKLGDFMMKVAQNTLKEVDLILFMINAEEGYGKGDEFIIEKLQHTSTPVF 120

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            I  K D         L   Y   Y       IS+  G  +E L+ ++++ L    +  P
Sbjct: 121 LIVNKIDQIHPDKLLLLIDEYRVRYPFKEIVPISALEGNNIETLLTQVEAYLPEGPQFYP 180

Query: 371 FSIPSHKRHLYHLSQTVR 388
               +     + +S+ +R
Sbjct: 181 SDQVTDHPERFIISELIR 198


>gi|297794363|ref|XP_002865066.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297310901|gb|EFH41325.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 427

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 32/215 (14%)

Query: 205 SHISQGKLGEI-------IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           + +   ++ E+        R+GY + +LG  N GKS+L N +  + ++IVTD P TTR  
Sbjct: 109 ALLDDYEMEELGHTPDTHHRSGY-VAVLGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHR 167

Query: 258 LTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEI-NSKKEIS 315
           +        Y + + DT G+ E     ++   +K       NAD +++L +   +   I 
Sbjct: 168 ILGICSSPEYQMILYDTPGVIEKKMHRLDTMMMKNVRDAAINADCVVILVDACKTPTYIE 227

Query: 316 ---------FPKNIDFIFIGTKSDL------------YSTYTE-EYDHLISSFTGEGLEE 353
                      K    + +  K DL            Y  +T+ +    +S+  G G+E+
Sbjct: 228 EVLKEGLGNLEKKPPMLLVMNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGIED 287

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           +   I S L       P  I S     + +S+ VR
Sbjct: 288 VKEWILSKLPFGPPYYPKDIVSEHPERFFVSEIVR 322


>gi|148259271|ref|YP_001233398.1| GTP-binding protein Era [Acidiphilium cryptum JF-5]
 gi|146400952|gb|ABQ29479.1| tRNA modification GTPase trmE [Acidiphilium cryptum JF-5]
          Length = 295

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG  NAGKS+L N      V+IVT    TTR  ++  +   G  + + DT GI    
Sbjct: 8   VALLGRPNAGKSTLLNQAIGAKVSIVTPKAQTTRFRISGIVMRGGDQIVLVDTPGIFAPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
             +++  +   +  V  ADL  L+ +          +              I  K DL  
Sbjct: 68  RRLDRAMVAAAWEGVAGADLACLIVDAAKADPDDLAEPIEALAATGRPRWLILNKIDLLP 127

Query: 334 TYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                                +IS+   +G++ L++ + + +       P    + +   
Sbjct: 128 RDKLLPLAETLARQGGFAEVFMISALKRDGVDRLLDALAAAMPEGPHLYPEDELTDQTER 187

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++ VR      L ++
Sbjct: 188 MLAAELVREQIFLQLRDE 205


>gi|290993400|ref|XP_002679321.1| [Fe] hydrogenase maturation protein [Naegleria gruberi]
 gi|284092937|gb|EFC46577.1| [Fe] hydrogenase maturation protein [Naegleria gruberi]
          Length = 543

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 12/201 (5%)

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           + S ++   ++    + +    +  +N      + +S   S   +G I      I I+G 
Sbjct: 35  LLSAVKRSSEWKMMMNTKIMMKEFSMNSKQLFHSGVSLSDSANNIGSIYIERTNIAIVGA 94

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEK 286
            N+GKS+L N L   + +IV   PGTT DV    ++L G    K+ DT G  E  D+ EK
Sbjct: 95  MNSGKSTLMNCLTNSNTSIVDSTPGTTADVKMTTMELHGIGPTKLFDTPGTDEASDLGEK 154

Query: 287 EGIKRTFLEVENADLILLLKEINSKKEISFPK---------NIDFIFIGTKSDLYSTYTE 337
           +  ++T + ++ +D+++++ +  +   +   K            F  I   S+L  +  E
Sbjct: 155 K-RQKTLIALKESDIVVVVVDPFNGSSVQQAKWLTGECEKNERPFCIIFNVSELKRSSVE 213

Query: 338 EY-DHLISSFTGEGLEELINK 357
              D L S  T   + E   +
Sbjct: 214 SLSDKLDSIETDLKVNEFEQQ 234


>gi|320547277|ref|ZP_08041569.1| GTP-binding protein Era [Streptococcus equinus ATCC 9812]
 gi|320448081|gb|EFW88832.1| GTP-binding protein Era [Streptococcus equinus ATCC 9812]
          Length = 298

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 78/201 (38%), Gaps = 22/201 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 7   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDTEQIVFIDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKS---- 329
             +    ++  +  +   + +L +   + K+        E      I  I +  K     
Sbjct: 67  TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKVH 126

Query: 330 ---------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +E LIN +K  L   F+  P    +     
Sbjct: 127 PDQLLEQIDDFRSQMDFKEIVPISALQGNNVETLINILKDNLEEGFQYFPEDQITDHPER 186

Query: 381 YHLSQTVRYLEMASLNEKDCG 401
           + +S+ +R  ++  L E++  
Sbjct: 187 FLVSEMIRE-KILKLTEQEVP 206


>gi|283770643|ref|ZP_06343535.1| GTP-binding protein era [Staphylococcus aureus subsp. aureus H19]
 gi|283460790|gb|EFC07880.1| GTP-binding protein era [Staphylococcus aureus subsp. aureus H19]
          Length = 299

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   DT GI +  
Sbjct: 9   VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSDLY- 332
             +    +K     +   D I+ +   N +        I   KN       +  K DL  
Sbjct: 69  HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKIDLVH 128

Query: 333 ----STYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                   EEY           IS+  G  ++  I+ +K+ L    K  P    S     
Sbjct: 129 PDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGEIIR 196


>gi|326202439|ref|ZP_08192308.1| small GTP-binding protein [Clostridium papyrosolvens DSM 2782]
 gi|325987557|gb|EGD48384.1| small GTP-binding protein [Clostridium papyrosolvens DSM 2782]
          Length = 396

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 18/172 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL NA+  +D+A+V++I GTT D +   ++L     V   DTAG
Sbjct: 10  NRLHIALFGRRNSGKSSLINAITGQDIALVSEIAGTTTDPVYKAMELHPIGPVMFIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFP---KNIDFIFIGTKSD 330
             +   + E   I++T   +E  D+ ++     E++ +KE +     + I  I +  K+D
Sbjct: 70  FDDVGTLGELR-IEKTRKAIEKTDVAIVFFSGTELSLEKEWTDELKKRKIPVIPVINKAD 128

Query: 331 LYSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +     +              +IS+    GL+++  ++   +   F+    +
Sbjct: 129 ILENTNDIKKQVEDTLGLMPIVISAKEKTGLDKVREELIRAVPEDFEVSSIT 180


>gi|238809602|dbj|BAH69392.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 290

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 28/213 (13%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  N GKSSL N + K DVAIVT++P TTRD +    + + + +   DT GI +  +
Sbjct: 8   SIIGRPNVGKSSLINQIVKYDVAIVTNVPQTTRDQIVGVYNEDDFQLVFVDTPGIHKPLN 67

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIF-IGTKSDL---- 331
           ++ +   K  F   ++ D ++ L  +N K        +   KN      + +K DL    
Sbjct: 68  LLGEALNKSAFESTKDVDCLIFLSPVNEKVGQGDILILDKIKNTKNKIAVISKIDLAKKP 127

Query: 332 ---------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                     S Y+ +    +S      +EELI  IK               + K   + 
Sbjct: 128 EEIQEKIEELSKYSFDKILSVSRNNENSIEELIKVIKQYAYEGEPFYDEDYITDKSMRFL 187

Query: 383 LSQTVRYLEMASLNEKDCG-------LDIIAEN 408
             + +R     +L  ++         +D I E+
Sbjct: 188 AKEIIRE-SAINLLREELPHSIAVEVIDFIEED 219


>gi|83590125|ref|YP_430134.1| small GTP-binding protein domain-containing protein [Moorella
           thermoacetica ATCC 39073]
 gi|83573039|gb|ABC19591.1| iron-only hydrogenase maturation protein HydF [Moorella
           thermoacetica ATCC 39073]
          Length = 405

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 18/168 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  NAGKSSL NAL  +D+A+V+ +PGTT D +   +++     V + DTAG
Sbjct: 8   NRLHIAIFGRRNAGKSSLINALTNQDLAVVSSVPGTTTDPVMKSMEILPLGPVVLIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---EISF-----PKNIDFIFIGTK 328
           I +  ++     +K+T   +   DL +L+ +  +     E+        + +  + +  K
Sbjct: 68  IDDVGELGTLR-VKKTMEVLRRTDLAILVLDPAAGAGPYELELQQRLKEERLPLVIVLNK 126

Query: 329 SDL--------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
            D               +    +S+ T +G+EEL  ++       F++
Sbjct: 127 IDQGGMELLPGLEKTLGQRVLPVSALTRQGIEELKGELIKAAPADFEE 174


>gi|331266548|ref|YP_004326178.1| GTPase/GTP-binding protein Era [Streptococcus oralis Uo5]
 gi|326683220|emb|CBZ00838.1| GTPase/GTP-binding protein Era [Streptococcus oralis Uo5]
          Length = 299

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L S   +  + +        S+  G  +  LI+ +   L   F+  P    +     
Sbjct: 128 PDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|300691971|ref|YP_003752966.1| 30S ribosomal subunit_binding GTPase [Ralstonia solanacearum PSI07]
 gi|299079031|emb|CBJ51693.1| 30S ribosomal subunit_binding GTPase [Ralstonia solanacearum PSI07]
          Length = 312

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +    E  R G  + I+G  N GKS+L NAL  + V+I +    TTR  +T     +  
Sbjct: 11  PESGAPEGFRCGM-VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDA 69

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNI 320
                DT G +          + R     + + D +L + E       ++K     P+  
Sbjct: 70  QFVFVDTPGFQTRHATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVLSLLPRET 129

Query: 321 DFIFIGTKSDLYSTYTE 337
             I I  K D    YT 
Sbjct: 130 PVILIVNKVDRLDAYTR 146


>gi|87199823|ref|YP_497080.1| GTP-binding protein Era [Novosphingobium aromaticivorans DSM 12444]
 gi|87135504|gb|ABD26246.1| GTP-binding protein Era [Novosphingobium aromaticivorans DSM 12444]
          Length = 297

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 22/203 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG  NAGKS+L NAL  + VAIV+    TTR  L          + ++DT G+ E  
Sbjct: 8   VAVLGAPNAGKSTLVNALVGQKVAIVSAKAQTTRARLMGIALEGEAQIILADTPGLFEPR 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSD--- 330
             +++  +   +   + AD ILL+ +   KK             +    I +  K D   
Sbjct: 68  RRLDRAMVSAAWDGAQEADAILLVVDARKKKRDYLEPILASLRERPERKILVLNKVDSTP 127

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     L      +    +S+ TG+G+ EL  ++  ++       P    S     
Sbjct: 128 KEPLLVMAEALTGEAAFDEVFFVSALTGDGVPELKRRLAELMPESAWHYPEDQVSDASER 187

Query: 381 YHLSQTVRYLEMASLNEKDCGLD 403
              ++  R      L++ +   D
Sbjct: 188 LMAAEITREQLYRQLHD-ELPYD 209


>gi|317051559|ref|YP_004112675.1| GTP-binding protein Era [Desulfurispirillum indicum S5]
 gi|316946643|gb|ADU66119.1| GTP-binding protein Era [Desulfurispirillum indicum S5]
          Length = 300

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 26/197 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L  A+  + ++I++D P TTR+ +      + + V   DT G
Sbjct: 4   RSGF-VGIVGRPNVGKSTLMGAIIGEKISIISDKPQTTRNRIMGVWHGDDFQVVFLDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----------PKNIDFIFI 325
           + +    +    +   F  +   D++LL+ E        F            +      +
Sbjct: 63  VHKGKYGINDFMLNTAFSVLSEVDILLLVVEYWETGGQEFNLLLGELRSRHRELPPVFLV 122

Query: 326 GTKSDLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             K DL     E  +                +S+  GE L+ L   I   +    +  P 
Sbjct: 123 VNKIDLAEDKHEILESIARQKDLFDFAGIIPVSALNGENLDRLKALIVEQMEEGPRYFPE 182

Query: 372 SIPSHKRHLYHLSQTVR 388
            + + +   + +++ +R
Sbjct: 183 DMITDQSERFLVAEFIR 199


>gi|226322424|ref|ZP_03797942.1| hypothetical protein COPCOM_00195 [Coprococcus comes ATCC 27758]
 gi|225209146|gb|EEG91500.1| hypothetical protein COPCOM_00195 [Coprococcus comes ATCC 27758]
          Length = 415

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 29/179 (16%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           +   I I G  NAGKSS+ NA+  +++AIV+D+ GTT D +   ++L     V I DT G
Sbjct: 10  DRVHIGIFGRRNAGKSSIINAITGQNLAIVSDVLGTTTDPVPKAMELLPLGPVVIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTK 328
           + +  ++ E   +K+ +  +   D+ +L+ + +   + +++S       K I ++ +  K
Sbjct: 70  LDDIGELGELR-VKKAYQILNKTDIAVLVIDASLGMTPEDLSILKKIQDKKIPYVVVKNK 128

Query: 329 SDLYSTYTEEYDHLI-------------------SSFTGEGLEELINKIKSILSNKFKK 368
           SDL S+                            S+ TG  + EL   I S    + + 
Sbjct: 129 SDLCSSAENGAVCPNLDSMSDASFHIDASNSIEVSTVTGYHVHELKELIASQAPEEDQD 187


>gi|82751170|ref|YP_416911.1| GTP-binding protein Era [Staphylococcus aureus RF122]
 gi|123547823|sp|Q2YT12|ERA_STAAB RecName: Full=GTPase Era
 gi|82656701|emb|CAI81128.1| GTP-binding protein [Staphylococcus aureus RF122]
          Length = 299

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   DT GI +  
Sbjct: 9   VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSDLY- 332
             +    +K     +   D I+ +   N +        I   KN       +  K DL  
Sbjct: 69  HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKIDLVH 128

Query: 333 ----STYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                   EEY           IS+  G  ++  I+ +K+ L    K  P    S     
Sbjct: 129 PDELMPKIEEYQSYMDFTEIVPISALDGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGEIIR 196


>gi|308189663|ref|YP_003922594.1| GTP-binding protein [Mycoplasma fermentans JER]
 gi|319776823|ref|YP_004136474.1| gtp-binding protein era [Mycoplasma fermentans M64]
 gi|307624405|gb|ADN68710.1| GTP-binding protein [Mycoplasma fermentans JER]
 gi|318037898|gb|ADV34097.1| GTP-binding protein Era [Mycoplasma fermentans M64]
          Length = 289

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 28/213 (13%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  N GKSSL N + K DVAIVT++P TTRD +    + + + +   DT GI +  +
Sbjct: 7   SIIGRPNVGKSSLINQIVKYDVAIVTNVPQTTRDQIVGVYNEDDFQLVFVDTPGIHKPLN 66

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIF-IGTKSDL---- 331
           ++ +   K  F   ++ D ++ L  +N K        +   KN      + +K DL    
Sbjct: 67  LLGEALNKSAFESTKDVDCLIFLSPVNEKVGQGDILILDKIKNTKNKIAVISKIDLAKKP 126

Query: 332 ---------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                     S Y+ +    +S      +EELI  IK               + K   + 
Sbjct: 127 EEIQEKIEELSKYSFDKILSVSRNNENSIEELIKVIKQYAYEGEPFYDEDYITDKSMRFL 186

Query: 383 LSQTVRYLEMASLNEKDCG-------LDIIAEN 408
             + +R     +L  ++         +D I E+
Sbjct: 187 AKEIIRE-SAINLLREELPHSIAVEVIDFIEED 218


>gi|229552355|ref|ZP_04441080.1| GTP-binding protein Era [Lactobacillus rhamnosus LMS2-1]
 gi|258539726|ref|YP_003174225.1| GTP-binding protein era [Lactobacillus rhamnosus Lc 705]
 gi|229314337|gb|EEN80310.1| GTP-binding protein Era [Lactobacillus rhamnosus LMS2-1]
 gi|257151402|emb|CAR90374.1| GTP-binding protein era [Lactobacillus rhamnosus Lc 705]
          Length = 300

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 66/188 (35%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +  + +AI++    TTR+ +          +   DT GI +  
Sbjct: 9   VAIIGRPNVGKSTFMNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYS 333
           + ++    K     +   D IL +   + +K                    I  K DL  
Sbjct: 69  NELDDYMDKAALSTLNQVDAILFMVAADEQKGAGDAYILRQLAEVKKPVYLILNKIDLVK 128

Query: 334 -----TYTEEYDHLI--------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                   E Y H          S+  G  ++EL+N +   L    +  P    +     
Sbjct: 129 PDDLLPLIESYQHDYHFAQVFPISATMGNSVDELLNSLTGTLPEGPQYYPEDQLTDHPEY 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGELIR 196


>gi|167747959|ref|ZP_02420086.1| hypothetical protein ANACAC_02691 [Anaerostipes caccae DSM 14662]
 gi|167652609|gb|EDR96738.1| hypothetical protein ANACAC_02691 [Anaerostipes caccae DSM 14662]
          Length = 301

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 76/204 (37%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + ++G  N GKS+L N L  + +AI +  P TTR+ +      +   +   DT 
Sbjct: 5   MKSGF-VTLIGRPNVGKSTLMNQLIGQKIAITSKKPQTTRNRIQTVFTDDRGQIVFLDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGT 327
           GI    + +    +K     +   DLIL L E  +          E         I +  
Sbjct: 64  GINRAKNKLGDYMLKVAERTLNEVDLILWLVEPTTFIGGGERYIIEQLGKVKTPVILVIN 123

Query: 328 KSD------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K+D      +    T   D          S+  G+  +++ + I   L            
Sbjct: 124 KTDTVKDEEILKAITTYKDVCEFAEIIPVSALKGQNTDDVTDSIFKYLPEGPMFFDEDTV 183

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +      ++ +R   +  L+++
Sbjct: 184 TDQPERQICAELIREKALRLLDQE 207


>gi|117928440|ref|YP_872991.1| small GTP-binding protein [Acidothermus cellulolyticus 11B]
 gi|117648903|gb|ABK53005.1| small GTP-binding protein [Acidothermus cellulolyticus 11B]
          Length = 458

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 17/166 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  AIV D+PG TRD ++ ++   G    I DT G +   
Sbjct: 17  VAVVGRPNVGKSTLVNRIVGRRQAIVEDVPGVTRDRVSYEVTWSGRRFTIVDTGGWQPGA 76

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLYS 333
             +      +  L V  ADL+L + +     ++ + +  K     +   + +  K D  +
Sbjct: 77  GGLSARVTAQAELAVAAADLVLFVVDATVGITETDAAVAKLLRRGDKPVLLVANKVDSAA 136

Query: 334 ---------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                    +      + +S+  G G  +L++ + + L +      
Sbjct: 137 GELDTGELWSLGLGQPYTVSALHGRGSGDLLDAVITALPSSGAGGE 182



 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 11/125 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N LA ++ A+V  + GTTRD +   + +     ++ DTAG+R  
Sbjct: 192 RVAIVGRPNVGKSSLLNRLAGEERALVDAVSGTTRDPVDAIVRIGDRRWRVVDTAGLRRR 251

Query: 281 DD---IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKS 329
                  E     RT   + +A+  ++L +     +++++   +         +    K 
Sbjct: 252 MRDAVGAEFYAGLRTDQAIRDAEAAVVLLDAAEPITEQDVRIVQKVIDAGRALVLAFNKW 311

Query: 330 DLYST 334
           D    
Sbjct: 312 DAVDA 316


>gi|332666380|ref|YP_004449168.1| GTP-binding protein Era-like-protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332335194|gb|AEE52295.1| GTP-binding protein Era-like-protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 298

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 23/194 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I I+GH N GKS+L NAL  + ++I+T+ P TTR  +   L  E + + +SDT G
Sbjct: 3   RSGF-INIIGHPNVGKSTLMNALVGERMSIITNKPQTTRHRIIGILSGEDFQMVLSDTPG 61

Query: 277 IRETDD-IVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           + +     + +          E+ADL+LL+ ++            ++   + +    +  
Sbjct: 62  VVDKPAYKMHQAMNSFVQSTFEDADLMLLVTDVLETYPAEDHLLAQLRKQQEVPMFVVLN 121

Query: 328 KSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL                  +     IS+      + L+N +K  L    +  P    
Sbjct: 122 KIDLVDEEKLAQLQQFWAEQLPQATLIPISALKKTNTDLLLNTLKENLPEGPEYYPKDQL 181

Query: 375 SHKRHLYHLSQTVR 388
           + +   + +S+ +R
Sbjct: 182 TDRPERFFMSEIIR 195


>gi|327460961|gb|EGF07294.1| GTP-binding protein Era [Streptococcus sanguinis SK1057]
          Length = 299

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 72/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +  ++  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVEAAYSTLREVDTVLFMVPVDEPRGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L +   +       +    IS+  G  +  LI+ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRQQMDFKEIVPISALQGNNVSHLIDILSENLEEGFQYFPEDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|13476443|ref|NP_108013.1| GTP-binding protein Era [Mesorhizobium loti MAFF303099]
 gi|21263601|sp|Q985A5|ERA_RHILO RecName: Full=GTPase Era
 gi|14027204|dbj|BAB54158.1| GTP-binding protein; Era [Mesorhizobium loti MAFF303099]
          Length = 310

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L    V+IVT    TTR ++      +   +   DT GI +  
Sbjct: 21  VALIGAPNAGKSTLVNQLVGAKVSIVTHKVQTTRAIVRGIATHDNAQIVFVDTPGIFKPK 80

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKSD--- 330
             ++   +   +   ++AD++LLL +       ++   +   K+       I  K D   
Sbjct: 81  RRLDTAMVTTAWGGAKDADIVLLLIDAERGIRGDADAILERLKDVRQPMALILNKVDRVK 140

Query: 331 ------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 L +   E+       ++S+ TG G ++L++ +   L       P    S     
Sbjct: 141 HETLLALSAAANEKVPFKRTFMVSALTGSGCKDLLDYLAQALPAGPWYYPEDQISDLPMR 200

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+++
Sbjct: 201 QLAAEITREKLYLRLHQE 218


>gi|206559399|ref|YP_002230160.1| GTP-binding protein Era [Burkholderia cenocepacia J2315]
 gi|206561199|ref|YP_002231964.1| GTP-binding protein Era [Burkholderia cenocepacia J2315]
 gi|198035437|emb|CAR51313.1| GTP-binding protein Era 2 [Burkholderia cenocepacia J2315]
 gi|198037241|emb|CAR53163.1| GTP-binding protein Era 1 [Burkholderia cenocepacia J2315]
          Length = 299

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T     +       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D+IL + E       + K     P  +  + I  K D  + 
Sbjct: 74  STALNRSLNRAVTSTLTSVDVILFVIEAGRFGPDDQKVLDLIPPGMPTLLIANKIDRVND 133

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               +  +               S+   E ++ L++ IK  L            + +   
Sbjct: 134 KASLFPFMQKVSELREFTELVPLSAQKPEDIKRLLDTIKPYLPEGEPIYGEDELTDRSSR 193

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 194 FLAAEILR 201


>gi|322387708|ref|ZP_08061317.1| GTP-binding protein Era [Streptococcus infantis ATCC 700779]
 gi|321141575|gb|EFX37071.1| GTP-binding protein Era [Streptococcus infantis ATCC 700779]
          Length = 311

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 20  VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 79

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 80  TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKVH 139

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L +   +  + +        S+  G  +  LI+ +   L   F+  P    +     
Sbjct: 140 PDQLLAQIDDFRNQMDFKEIVPISALQGNNVSHLIDILSENLEEGFQYFPSDQITDHPER 199

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 200 FLVSEMIR 207


>gi|282858168|ref|ZP_06267363.1| GTP-binding protein Era [Pyramidobacter piscolens W5455]
 gi|282584090|gb|EFB89463.1| GTP-binding protein Era [Pyramidobacter piscolens W5455]
          Length = 303

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 83/201 (41%), Gaps = 24/201 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N + K  ++IV+  P TTRD +    +     +   DT GI    
Sbjct: 10  VAVIGRPNVGKSSLLNRILKYKLSIVSAKPQTTRDNILGLYNGAASQILFVDTPGIHAPL 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFIFIGTKSDL 331
           + + +  ++R    +E+A+++L +  I+ + E          +     I  +    K DL
Sbjct: 70  NKLGERLVERAVSGLEDANVVLYVVTIDDRPEQSENDRILKVLRDYPGIPVVLAVNKVDL 129

Query: 332 YSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
             + ++                   +S+  G   E L+  ++S+L       P  + + +
Sbjct: 130 PGSRSKILPLIDRFTKKMKLRDIVPVSAKDGTNDEVLVKTLESLLPVAAPLYPDDMITDR 189

Query: 378 RHLYHLSQTVRYLEMASLNEK 398
              +   + +R   +A  +E+
Sbjct: 190 TERFIAQELIREKVIACTDEE 210


>gi|323340794|ref|ZP_08081046.1| GTP-binding protein Era [Lactobacillus ruminis ATCC 25644]
 gi|323091917|gb|EFZ34537.1| GTP-binding protein Era [Lactobacillus ruminis ATCC 25644]
          Length = 300

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 10  IAILGRPNVGKSTFLNRIIGQKIAIMSDKAQTTRNKIQGIYTTDDAQIVFIDTPGIHKPQ 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSD--- 330
             +    ++     +   D ++ +     K+       I   KN          K D   
Sbjct: 70  SRLGDFMVESALSTLNEVDAVIFMVNAEQKRGRGDDFIIERLKNVKKPIYLAINKIDRIH 129

Query: 331 ------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y    D      IS+  G   +E I+ +   L    +  P    +     
Sbjct: 130 PDHLLEVMDDYRGALDFKDVFPISALQGNNCQEFIDTLIKDLPEGPQYYPTDQVTDHPER 189

Query: 381 YHLSQTVR 388
           +   + +R
Sbjct: 190 FIAGELIR 197


>gi|225377164|ref|ZP_03754385.1| hypothetical protein ROSEINA2194_02810 [Roseburia inulinivorans DSM
           16841]
 gi|225211069|gb|EEG93423.1| hypothetical protein ROSEINA2194_02810 [Roseburia inulinivorans DSM
           16841]
          Length = 302

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 85/211 (40%), Gaps = 27/211 (12%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL---TIDLDLEGYL 268
           + E  ++G+ + I+G  N GKS+L N L  + +AI ++ P TTR+ +     D++     
Sbjct: 1   MNEKFKSGF-VTIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTDMERG--Q 57

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPK--NI 320
           +   DT GI    + + +  +      +   D+IL L E         +  I   K    
Sbjct: 58  IVFLDTPGIHRAKNKLGEYMVNVAEHTLNEVDVILWLVEPSNFIGAGEQHIIEQLKKVKT 117

Query: 321 DFIFIGTKSDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFK 367
             I I  K D            TY + YD       S+   + L+ +I+ I   L    +
Sbjct: 118 PVILIINKVDTVDREKIVEYIDTYRKVYDFAEIIPASALRAKNLDTVIDMIFKYLPYGPQ 177

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                  + +     +++ +R   + +L+++
Sbjct: 178 FYDEDTVTDQPERAIVAEIIREKALHALDDE 208


>gi|315612998|ref|ZP_07887909.1| GTP-binding protein Era [Streptococcus sanguinis ATCC 49296]
 gi|315315108|gb|EFU63149.1| GTP-binding protein Era [Streptococcus sanguinis ATCC 49296]
          Length = 299

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L S   +  + +        S+  G  +  LI+ +   L   F+  P    +     
Sbjct: 128 PDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|317472456|ref|ZP_07931779.1| GTP-binding protein Era [Anaerostipes sp. 3_2_56FAA]
 gi|316900074|gb|EFV22065.1| GTP-binding protein Era [Anaerostipes sp. 3_2_56FAA]
          Length = 301

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 76/204 (37%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + ++G  N GKS+L N L  + +AI +  P TTR+ +      E   +   DT 
Sbjct: 5   MKSGF-VTLIGRPNVGKSTLMNQLIGQKIAITSKKPQTTRNRIQTVFTDERGQIVFLDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGT 327
           GI    + +    +K     +   DLIL L E  +          E         I +  
Sbjct: 64  GINRAKNKLGDYMLKVAERTLNEVDLILWLVEPTTFIGGGERYIIEQLGKVKTPVILVIN 123

Query: 328 KSD------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K+D      +    T   D          S+  G+  +++ + I   L            
Sbjct: 124 KTDTVKDEEILKAITTYKDVCEFAEIIPVSALKGQNTDDVTDSIFKYLPEGPMFFDEDTV 183

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +      ++ +R   +  L+++
Sbjct: 184 TDQPERQICAELIREKALRLLDQE 207


>gi|303236850|ref|ZP_07323429.1| GTP-binding protein Era [Prevotella disiens FB035-09AN]
 gi|302483018|gb|EFL46034.1| GTP-binding protein Era [Prevotella disiens FB035-09AN]
          Length = 293

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 81/187 (43%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ E   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGEKISIATFKAQTTRHRIMGIVNTEDMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSD---- 330
             +++  +  +   + +AD++L + ++  K E +          +I  I +  K D    
Sbjct: 67  YKMQEMMLHFSESALADADILLYVTDVIEKPEKNSEFLEKVAKMDIPVILLINKIDESDQ 126

Query: 331 -----LYSTY----TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                L   +     +     +S+    G + L+++I+ +L            + K   +
Sbjct: 127 KTVVELVEKWHTLLPKAEILPLSAKNKFGTDALMHRIQELLPESPAYFDKDQLTDKPAKF 186

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 187 FVTEIIR 193


>gi|212704882|ref|ZP_03313010.1| hypothetical protein DESPIG_02949 [Desulfovibrio piger ATCC 29098]
 gi|212671724|gb|EEB32207.1| hypothetical protein DESPIG_02949 [Desulfovibrio piger ATCC 29098]
          Length = 309

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 78/204 (38%), Gaps = 29/204 (14%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G+  R G+ + ++G  NAGKS+L N L  + V IVT  P TTR+ +   L  +       
Sbjct: 3   GQNYRCGW-VALMGPPNAGKSTLLNGLMGQKVTIVTPKPQTTRNQIVGILTDDDAQAIFM 61

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------------SKKEISFPK 318
           DT G+ +    + K  I+  +  +  AD+I+ + + +                 E     
Sbjct: 62  DTPGLSQVRGRLSKTMIQAVWQSLGQADVIMPVLDAHLYIRHPEYLDRDLAPVAEALASD 121

Query: 319 NIDFIFIGTKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
               + +  K DL++               +       +S+   +GL EL   IK  L  
Sbjct: 122 ERPMVVVANKVDLFADKSRMLPLLTRLNEMWPRAEIFPVSALNKDGLPELAKLIKKQLPK 181

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVR 388
              + P    S     +  ++ VR
Sbjct: 182 GIAQFPEDQISTAPVRFMAAEIVR 205


>gi|260591203|ref|ZP_05856661.1| GTP-binding protein Era [Prevotella veroralis F0319]
 gi|260537068|gb|EEX19685.1| GTP-binding protein Era [Prevotella veroralis F0319]
          Length = 293

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 80/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTDDSQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKN-----IDFIFIGTKSDLYST 334
             +++  ++ +   + +AD++L + ++  N +K + F +      I  I +  K D    
Sbjct: 67  YKMQEMMLQFSESALADADILLYVTDVVENPEKNMDFLEKVSKMTIPVILLINKIDESDQ 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                                IS+    G + L+ +I  +L +          + K   +
Sbjct: 127 KKLGDLVGRWHKLLPNAEILPISAKNKFGTDILMKRIHELLPDSPAFFDKDQLTDKPARF 186

Query: 382 HLSQTVR 388
            +S+ +R
Sbjct: 187 FVSEIIR 193


>gi|56478591|ref|YP_160180.1| GTP-binding protein Era [Aromatoleum aromaticum EbN1]
 gi|56314634|emb|CAI09279.1| GTP-binding protein Era homolog [Aromatoleum aromaticum EbN1]
          Length = 305

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 8/130 (6%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            Q     + R G+ + I+G  N GKS+L N L  + ++IV+    TTR  +T  L  +  
Sbjct: 7   PQADDKALFRTGF-VAIVGRPNVGKSTLLNRLIGQKISIVSRKAQTTRHRVTGILTSDNA 65

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLKEI-----NSKKEIS-FPKNI 320
                DT G +          + RT    + + DL+ L+ E      + +K +S  P + 
Sbjct: 66  QFVFVDTPGFQTRHRNALNRSMNRTVSQVLGDVDLVFLVIEAGRFGDDDRKVVSVLPGDA 125

Query: 321 DFIFIGTKSD 330
             + +  K D
Sbjct: 126 KVVLVINKVD 135


>gi|225850199|ref|YP_002730433.1| GTP-binding protein Era [Persephonella marina EX-H1]
 gi|225646733|gb|ACO04919.1| GTP-binding protein Era [Persephonella marina EX-H1]
          Length = 305

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 86/198 (43%), Gaps = 24/198 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  R G+ + ++G  N GKS++ N +    ++IV+  P TTR  +      +   +   D
Sbjct: 5   KEFRAGF-VALIGRPNVGKSTIMNNILGTKLSIVSPKPQTTRMRILGVKHNKDAQIIFLD 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI------DFIF 324
           T GI++  D++ K  ++     +E AD+++++ E +   +K++     N         I 
Sbjct: 64  TPGIQKGKDLLTKTVVESAVSSMEEADVLVMIIEADKGWTKEDEQLLHNYIEKLNKPTIL 123

Query: 325 IGTKSD----------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
           +  K D          L     ++Y+      +S+  G+ L++ +  +K  L       P
Sbjct: 124 VINKIDKMKDKRLLLPLIEESAKKYNFVEIIPVSAIKGQNLDDFVQTLKKYLPPSPPLFP 183

Query: 371 FSIPSHKRHLYHLSQTVR 388
               +     +++++ +R
Sbjct: 184 EDQITDLPIKFYIAEIIR 201


>gi|83748442|ref|ZP_00945464.1| Era [Ralstonia solanacearum UW551]
 gi|207725214|ref|YP_002255610.1| GTP-binding protein [Ralstonia solanacearum MolK2]
 gi|207743589|ref|YP_002259981.1| gtp-binding protein era homolog [Ralstonia solanacearum IPO1609]
 gi|83724853|gb|EAP72009.1| Era [Ralstonia solanacearum UW551]
 gi|206590448|emb|CAQ37410.1| gtp-binding protein era homolog [Ralstonia solanacearum MolK2]
 gi|206594988|emb|CAQ61915.1| gtp-binding protein era homolog [Ralstonia solanacearum IPO1609]
          Length = 315

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 8/131 (6%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G  + I+G  N GKS+L NAL  + V+I +    TTR  +T     +       D
Sbjct: 20  EGFRCGM-VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVD 78

Query: 274 TAGIRETDDIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIG 326
           T G +          + R     + + D +L + E       ++K     P+    I I 
Sbjct: 79  TPGFQTRHATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVLSLLPRETPVILIV 138

Query: 327 TKSDLYSTYTE 337
            K D    YT 
Sbjct: 139 NKVDRLDAYTR 149


>gi|261365608|ref|ZP_05978491.1| GTP-binding protein Era [Neisseria mucosa ATCC 25996]
 gi|288565938|gb|EFC87498.1| GTP-binding protein Era [Neisseria mucosa ATCC 25996]
          Length = 308

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 24/210 (11%)

Query: 202 DISSHI-SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           DI + + ++       R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T 
Sbjct: 2   DIETFLQNESNHPADYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTG 60

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLK------EINSKKE 313
               +       DT G +        + + +     +   D ++ +       + +    
Sbjct: 61  IYTDDTAQFVFVDTPGFQTKHRNALNDRLNQNVTEALSGVDAVVFVVEAMRFTDADRIVM 120

Query: 314 ISFPKNIDFIFIGTKSD-----------LYSTYTEEYDH----LISSFTGEGLEELINKI 358
              P N   I +  K D                + E+       +S+  G G+  L+ ++
Sbjct: 121 KQLPANTPVILVINKIDKNKAGNGGLQEFIDQISAEFKFAGHETVSAKHGLGIANLLARL 180

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           +  L       P  + + +   +  ++ VR
Sbjct: 181 RPYLPESVPMYPEEMVTDRSSRFLATEIVR 210


>gi|194017708|ref|ZP_03056318.1| GTP-binding protein Era [Bacillus pumilus ATCC 7061]
 gi|194010608|gb|EDW20180.1| GTP-binding protein Era [Bacillus pumilus ATCC 7061]
          Length = 301

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E  ++G+ + I+G  N GKS+  N +  + +AI++D P TTR+ +   L         
Sbjct: 2   TNESFKSGF-VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNTSQTIF 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFI 323
            DT GI +    +    +K     ++  DLIL +           +  I   K       
Sbjct: 61  IDTPGIHKPKHKLGDFMMKVATNTLKEVDLILFMINAKEGYGKGDEFIIERLKQTSTPVF 120

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K D         L   Y   Y       IS+  G  ++ L+ +++  L    +  P
Sbjct: 121 LVVNKIDQIHPDELFLLIDEYRTRYPFKEIVPISALEGNNIDTLLQQVEGYLPEGPQFYP 180

Query: 371 FSIPSHKRHLYHLSQTVR 388
               +     + +S+ +R
Sbjct: 181 ADQVTDHPERFIISELIR 198


>gi|163786092|ref|ZP_02180540.1| putative GTP-binding protein [Flavobacteriales bacterium ALC-1]
 gi|159877952|gb|EDP72008.1| putative GTP-binding protein [Flavobacteriales bacterium ALC-1]
          Length = 293

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ + + V +SDT GI +  
Sbjct: 7   VNIIGNPNVGKSTLMNAFIGEKLSIITSKAQTTRHRILGIVNGDDFQVILSDTPGIIKPA 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLY-- 332
             ++   +       E+AD+++ + EI     K E  F K     I  + +  K D    
Sbjct: 67  YELQTSMMDFVKSAFEDADVLIYMVEIGEKALKDEAFFKKITNSKIPVLLLLNKIDNSNQ 126

Query: 333 -----------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                      S       + IS+  G  ++ + ++I  +L       P    + K   +
Sbjct: 127 EQLEEQAELWQSKVPNAEFYPISALKGFNVQNVFDRIIELLPESPAFYPKDQLTDKPERF 186

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 187 FVNEAIR 193


>gi|300176539|emb|CBK24204.2| GTP binding protein [Blastocystis hominis]
          Length = 607

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR--NGYKIVILGHSNAGKSSLFNALAKKDVA 245
           + +  +         I   + + +  + +   N + + ++G +N GKS+LFN L  +  A
Sbjct: 55  TQRRFIGSNHEQYMKIEYVLEKKERNDKVVQLNHFSVALVGRTNVGKSTLFNRLVGRRDA 114

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD---IVEKEGIKRTFLEVENADLI 302
           +V+   GTTRD       + G    + DT G    +    ++E++  K+T   VE AD++
Sbjct: 115 LVSKEAGTTRDRREGKGHISGLEFTLIDTGGYVPENKNISLIEQQINKQTEYAVEKADVL 174

Query: 303 LLLKE 307
             L +
Sbjct: 175 FFLLD 179



 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 66/139 (47%), Gaps = 12/139 (8%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           ++    ++     ++ ILG  N+GKS+L N L K D  I   IPG TRD ++ +++    
Sbjct: 301 NEKNTRDLDDEILQLTILGIPNSGKSTLLNTLLKTDRFITGSIPGLTRDTVSTEIEFHNR 360

Query: 268 LVKISDTAGIRETDDI----VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP--- 317
            +++ DT GI + D +    +    +     +++ + ++ L+ + +   +K +++     
Sbjct: 361 RIRVVDTPGIPKADGVLPPSLNSLSVFHAHKQLDYSHVVALILDGSRLLTKHDLALAKEV 420

Query: 318 --KNIDFIFIGTKSDLYST 334
             K      I  KSD+  +
Sbjct: 421 LDKGRGLFVILNKSDVMQS 439


>gi|161760697|ref|YP_253264.2| GTP-binding protein Era [Staphylococcus haemolyticus JCSC1435]
 gi|317374941|sp|Q4L6R7|ERA_STAHJ RecName: Full=GTPase Era
          Length = 299

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +      +   DT GI +  
Sbjct: 9   VSIIGRPNVGKSTFMNRVIGHKIAIMSDKAQTTRNKIQGVMTRNDAQIIFLDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY- 332
             +    ++     +   D I+ +  +N +         E+          +  K DL  
Sbjct: 69  HKLGDYMMRVAKNTLSEIDAIMFMVNVNEEIGRGDEYIMEMLKNVKTPVFLVLNKIDLVH 128

Query: 333 ----STYTEEYDHLI--------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                   E+Y   +        S+  G  ++  I+ +K+ L    K  P    S     
Sbjct: 129 PDALMPRIEQYQKYMNFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 189 FVVSEIIR 196


>gi|323491197|ref|ZP_08096383.1| GTPase Era [Vibrio brasiliensis LMG 20546]
 gi|323314565|gb|EGA67643.1| GTPase Era [Vibrio brasiliensis LMG 20546]
          Length = 325

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 23/203 (11%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            Q    E    G+ + I+G  N GKS+L N +  + ++I +  P TTR  +        Y
Sbjct: 21  EQASSPENQHCGF-VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDY 79

Query: 268 LVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----N 319
                DT G+  E    + +   +     + + +L+  L +     S  E+   K    N
Sbjct: 80  QAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDGTHWTSDDEMVLTKLQKSN 139

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNK 365
              +    K D      +   H++              S+  G+ ++ L   ++  L   
Sbjct: 140 FPVVLCVNKVDNVQDRNDVMLHMMEMSKKMEFVDVVPISAKHGKNIDVLRKHVREHLPKA 199

Query: 366 FKKLPFSIPSHKRHLYHLSQTVR 388
               P    + +   +  S+ VR
Sbjct: 200 THHFPEEYVTDRSQRFMASEIVR 222


>gi|297565483|ref|YP_003684455.1| GTP-binding protein Era [Meiothermus silvanus DSM 9946]
 gi|296849932|gb|ADH62947.1| GTP-binding protein Era [Meiothermus silvanus DSM 9946]
          Length = 297

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 67/172 (38%), Gaps = 20/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL    VA ++  P TTR  +          +   DT G+ E +
Sbjct: 11  VAIVGKPNVGKSTLLNALLGVKVAPISPKPQTTRKRIRGIYSEGNRQIVFVDTPGVHEPE 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
           D +     ++    + + + ++ + ++            + +   +N+  + +G K D  
Sbjct: 71  DALGDYMSQQVAEALADVNAVVWVVDLRHPPTREDELVARMLQPIQNVPILLVGNKLDAA 130

Query: 333 -----------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                      S   +    ++S+     ++ L +++ ++L       P   
Sbjct: 131 KRPEDAMQEYRSLLHQAEPRMLSALDERAVKNLRDELLAMLPEGPFFYPEVF 182


>gi|145489801|ref|XP_001430902.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398003|emb|CAK63504.1| unnamed protein product [Paramecium tetraurelia]
          Length = 607

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 12/167 (7%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
              ED  +    E + + ++ K+ I       K    +RN   + I+G  N GKSSL N 
Sbjct: 259 PNPEDNSDLD-DENIANPIYTKSPIQEKQGVSKENLQLRNPIMLSIMGRQNVGKSSLVNT 317

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLE 295
           L  +D  I    PGTTRD ++     +G  +++ DTAGI     I    + + I +T   
Sbjct: 318 LLGEDRVIADPTPGTTRDPISTFWVYKGQKIQLVDTAGIEPKPKIQTDLDLQIIAKTRST 377

Query: 296 VENADLILLLKE-INSKKEISFP-------KNIDFIFIGTKSDLYST 334
           +  +++++LL + + + +E+          +    I    K D+   
Sbjct: 378 LRFSNVVVLLIDSLGAFREVDLELAQEIVKQGRGLIIAVNKWDMVDN 424



 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 47/188 (25%)

Query: 220 YKIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI- 277
             I ++G S+ GKSSLFN L   ++VAI ++    TRD      ++    ++  DTAGI 
Sbjct: 15  LTISLIGRSSVGKSSLFNKLQTGENVAITSNQKNITRDRKEAISEIFPLPIRFVDTAGIE 74

Query: 278 ----RETDDIVEKEGIKRTFLEVENADLILLLKE-------------------------- 307
               ++  + ++++ + +T   +E +D+ L + +                          
Sbjct: 75  NVALKKILNPLQQKMLMQTINAIEYSDIALFVVDAKAGLTNIDHQIARWLKKTLQLTNPD 134

Query: 308 ---INSKKEISFPKN-IDFIFIGTKSDLYSTYTEEYD-----------HLISSFTGEGLE 352
              +N  KE+    N    I +  K +  S +  + D             +S+  G G +
Sbjct: 135 PKLVNELKELEIRTNLKKAILVANKCENDSIFETDIDAQLKRLGLGNPIYVSAVDGSGFQ 194

Query: 353 ELINKIKS 360
           +L+ KI  
Sbjct: 195 DLLTKISE 202


>gi|86605904|ref|YP_474667.1| GTP-binding protein Era [Synechococcus sp. JA-3-3Ab]
 gi|86554446|gb|ABC99404.1| GTP-binding protein Era [Synechococcus sp. JA-3-3Ab]
          Length = 358

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 68/188 (36%), Gaps = 22/188 (11%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G  N GKS+L NAL  + +AI + +  TTR+ L   L L    +   DT GI +   
Sbjct: 70  ALIGRPNVGKSTLMNALVGQKIAITSPVAQTTRNRLRGILSLPQAQIIWVDTPGIHKPHH 129

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYST- 334
            + +  +      + + D++L + + +              P     I +  K+DL    
Sbjct: 130 RLGEILVHNAQAAIGSVDVVLFVVDGSVPAGRGDAFIAERIPSATPCILVCNKADLLPKE 189

Query: 335 --------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                                 +S+     L  LI     +L       P  + + +   
Sbjct: 190 SAARQAHQESYQALRPGAPVVWVSALDPGSLAPLIQATVDLLPPGPYYYPPDLVTDQPER 249

Query: 381 YHLSQTVR 388
           + +++ +R
Sbjct: 250 FIMAELIR 257


>gi|323343320|ref|ZP_08083547.1| GTP-binding protein Era [Prevotella oralis ATCC 33269]
 gi|323095139|gb|EFZ37713.1| GTP-binding protein Era [Prevotella oralis ATCC 33269]
          Length = 305

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 68/163 (41%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +
Sbjct: 19  VNIVGNPNVGKSTLMNQLVGEKISIATFKAQTTRHRIMGIVNTDDAQIVFSDTPGVLKPN 78

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--ISFPKN-----IDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++    E  I F        I  + +  K D    
Sbjct: 79  YKLQESMLAFSESALTDADVLLYVTDVVEAPEKNIEFLDKVKKMTIPVLLLINKIDQTDQ 138

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                                IS+    G + L+ +IK +L  
Sbjct: 139 KTLGNIVEKWHQLLPNAEILPISAQNKFGTDMLLKRIKELLPE 181


>gi|189500921|ref|YP_001960391.1| GTP-binding protein Era [Chlorobium phaeobacteroides BS1]
 gi|189496362|gb|ACE04910.1| GTP-binding protein Era [Chlorobium phaeobacteroides BS1]
          Length = 306

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 26/193 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L N L    ++IVT  P TTR  +T     +   +   DT GI +  
Sbjct: 12  VAIIGPPNAGKSTLLNRLLNHKLSIVTPKPQTTRKKITGIYHSDRCQILFLDTPGIMKPM 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFIGTK 328
             + +  +  T   ++ AD+I+ +   + K             +E         I    K
Sbjct: 72  QELHQSMLTATRSTLKEADVIITMIPASKKNGLFDQDFTELLFREWLTNTGKPVIAALNK 131

Query: 329 SD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           SD             +   +  E    +S+  G G ++LI  +  +L       P  I S
Sbjct: 132 SDFLNAGEQEEALRIIKERWNPEKALAVSALKGSGTDDLIEALIPLLPASAPLYPEDILS 191

Query: 376 HKRHLYHLSQTVR 388
                + +S+ +R
Sbjct: 192 TAPERFFVSEIIR 204


>gi|153005017|ref|YP_001379342.1| GTP-binding protein Era [Anaeromyxobacter sp. Fw109-5]
 gi|152028590|gb|ABS26358.1| GTP-binding protein Era [Anaeromyxobacter sp. Fw109-5]
          Length = 310

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  N GKS+L N +  + VAIVT  P TTR  +    + +G  +   DT G
Sbjct: 10  RAGF-VAIVGRPNVGKSTLLNRVLGEHVAIVTPRPQTTRTRILGIWNGKGAQIAFFDTPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           +      + +  ++     ++  D +L+L E  +  E
Sbjct: 69  LHRAKGPLNRRMVEVALTTLDEVDAVLMLVEAGTGPE 105


>gi|78499699|gb|ABB45853.1| hypothetical protein [Eutrema halophilum]
          Length = 429

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 32/215 (14%)

Query: 205 SHISQGKLGEI-------IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           + +   ++ E+        R+GY + +LG  N GKS+L N +  + ++IVTD P TTR  
Sbjct: 111 ALLDDYEMEELGHTPDTNHRSGY-VAVLGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHR 169

Query: 258 LTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKE-----INSK 311
           +        Y + + DT G+ E     ++   +K       NAD +++L +      N +
Sbjct: 170 ILGICSSPEYQMILYDTPGVIEKKMHRLDTMMMKNVRDAAINADCVVVLVDACKMPANIE 229

Query: 312 KEIS-----FPKNIDFIFIGTKSDL------------YSTYTE-EYDHLISSFTGEGLEE 353
           + +        K    + +  K DL            Y  +T+ +    +S+  G G+E+
Sbjct: 230 EVLKEGLGNLEKRPPMLLVMNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 289

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           +   I S L       P  I S     + +++ VR
Sbjct: 290 VKEWILSKLPFGPPYYPKDIVSEHPERFFVAEIVR 324


>gi|262368561|ref|ZP_06061890.1| GTP-binding protein Era [Acinetobacter johnsonii SH046]
 gi|262316239|gb|EEY97277.1| GTP-binding protein Era [Acinetobacter johnsonii SH046]
          Length = 342

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 78/215 (36%), Gaps = 25/215 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N L  + ++I +  P TTR  +              DT G
Sbjct: 38  RSGF-VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSRAKSQAVFVDTPG 96

Query: 277 IRETD-DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK----NIDFIFIGTK 328
           + + +   + K   +     + + +L+L + + +      E+   K     +  I +  K
Sbjct: 97  MHKKEVRAINKMMNRAASSALRDVNLVLFVLDADKWTQNDELVLEKLKNAEMPVILVINK 156

Query: 329 SDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            D           +               S+  G  L+ L + I+  L  +         
Sbjct: 157 IDTLENKNHALPLIQERAKLMNFAEIVPVSALRGANLDHLRDTIEKYLPFQPPMYSLDQL 216

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
           + +   +  S+ +R   M  L E +   D+ +   
Sbjct: 217 TDRSERFLASEIIREKIMRQLGE-ELPYDLTVQIE 250


>gi|222152667|ref|YP_002561842.1| GTP-binding protein Era [Streptococcus uberis 0140J]
 gi|254783667|sp|B9DRF9|ERA_STRU0 RecName: Full=GTPase Era
 gi|222113478|emb|CAR41209.1| GTP-binding protein Era homolog [Streptococcus uberis 0140J]
          Length = 299

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK----- 328
             +    ++  +  +   D +L +   + K+        E      I  I +  K     
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMIMERLKNAKIPVILVINKIDKVH 127

Query: 329 --------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +  LI+ +   L   F+  P    +     
Sbjct: 128 PDQLLEQIDDFRSQMDFKEVVPISALQGNNVPTLISLLTDNLEEGFQYFPEDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|215482646|ref|YP_002324840.1| GTP-binding protein Era [Acinetobacter baumannii AB307-0294]
 gi|213986558|gb|ACJ56857.1| GTP-binding protein Era [Acinetobacter baumannii AB307-0294]
          Length = 301

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 78/210 (37%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +
Sbjct: 1   MAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 60

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + K   +     + + +L+L + +        ++   K    ++  I +  K+D + 
Sbjct: 61  VRAINKMMNRAAHSALRDVNLVLFVIDAHKWTQNDDLVLEKLKNADMPVILVINKADTFG 120

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E    +               S+  G  LE L   I+  L  +     F   + +  
Sbjct: 121 DKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITDRSE 180

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M  L E +   D+ +   
Sbjct: 181 RFLASEIIREKIMRQLGE-ELPYDLTVQIE 209


>gi|270339920|ref|ZP_06006458.2| GTP-binding protein Era [Prevotella bergensis DSM 17361]
 gi|270333271|gb|EFA44057.1| GTP-binding protein Era [Prevotella bergensis DSM 17361]
          Length = 310

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 76/187 (40%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++     +  SDT G+ + +
Sbjct: 24  VNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTPEMQIVFSDTPGVLKPN 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKN-----IDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++  N +K + F        I  I +  K D    
Sbjct: 84  YKMQEMMLAFSESALSDADILLYVTDVVENPEKNMDFLNRVKTMTIPVILLINKIDETDQ 143

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                                IS+    G + L+ +I  +L            + K   +
Sbjct: 144 QKLGDLVEKWHALLPNAEILPISAKNKFGTDILMKRIAELLPESPAYFDKDQLTDKPARF 203

Query: 382 HLSQTVR 388
            +S+ +R
Sbjct: 204 FVSEIIR 210


>gi|160945169|ref|ZP_02092395.1| hypothetical protein FAEPRAM212_02688 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442900|gb|EDP19905.1| hypothetical protein FAEPRAM212_02688 [Faecalibacterium prausnitzii
           M21/2]
          Length = 324

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 73/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N L  + VAIVT  P TTR  +T  +        + DT G+ +  
Sbjct: 31  VAVIGRPNVGKSSLTNLLVGEKVAIVTSKPQTTRTRITGVITRGPLQYVLLDTPGVHKAH 90

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYST 334
           + + K   K     + + D+ ++L E    +N  +     +  ++   I +  K+DL   
Sbjct: 91  NKLGKRMDKTASDSIADVDVSMMLFEPYGALNESEMALVEALHRSGPAIAVINKTDLVKE 150

Query: 335 YTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
             +              +  + IS    EG EEL + +                +     
Sbjct: 151 PADLETRKAELKALGVFDEIYTISVRNKEGSEELFDALSRYAVEGPHYFDDDAYTDMPEK 210

Query: 381 YHLSQTVR 388
             +++ +R
Sbjct: 211 ELVAEVIR 218


>gi|169829166|ref|YP_001699324.1| GTP-binding protein Era-like protein (Bex protein) [Lysinibacillus
           sphaericus C3-41]
 gi|254783660|sp|B1HTJ0|ERA_LYSSC RecName: Full=GTPase Era
 gi|168993654|gb|ACA41194.1| GTP-binding protein era-like protein (Bex protein) [Lysinibacillus
           sphaericus C3-41]
          Length = 305

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 24/196 (12%)

Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R+GYK   I I+G  N GKS+  N +  + +AI++D P TTR+ +   L      +   D
Sbjct: 5   RSGYKSGFISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTTDSQMIFID 64

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           T GI +    +    +K     +   D+I+ +     K         E+    +     +
Sbjct: 65  TPGIHKPKHKLGDFMLKVAKNTLREVDVIMFMVNAEQKLGKGDEFILEMLAGNSTPVFLV 124

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         +  +Y E Y+      IS+  G  +E L++ +   L    +  P  
Sbjct: 125 INKIDQIHPDELLGIIESYKERYEFAEIIPISALQGNNVESLLDTLPKYLPEGPQYYPAD 184

Query: 373 IPSHKRHLYHLSQTVR 388
             +     + + + +R
Sbjct: 185 QVTDHPERFIIYELIR 200


>gi|329572234|gb|EGG53894.1| hypothetical protein HMPREF9520_02387 [Enterococcus faecalis
           TX1467]
          Length = 133

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D   TTR+ +     +    +   DT GI +  
Sbjct: 10  VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGIHKPK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNI--DFIFIGTK 328
             +    ++  +  +   D  L +   + K+       I   KN       I  K
Sbjct: 70  HRLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYLIINK 124


>gi|312131517|ref|YP_003998857.1| gtp-binding protein era [Leadbetterella byssophila DSM 17132]
 gi|311908063|gb|ADQ18504.1| GTP-binding protein Era [Leadbetterella byssophila DSM 17132]
          Length = 295

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 24/195 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE----GYLVKIS 272
           R G+ I I+G  N GKS+L N L  + ++I+T    TTR  +   ++ E     + +  S
Sbjct: 5   RAGF-ISIVGKPNVGKSTLMNQLVGEKLSIITSKAQTTRHRIMGIVNGETPEFDFQMVYS 63

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPKN--IDFIFIG 326
           DT GI +    + K  ++     +E+ D+IL + +I    + +  I   KN     I I 
Sbjct: 64  DTPGIIKPVYELHKSMMEFVHGSIEDGDVILFVTDIYEKYDEEDVIERLKNATSPIILII 123

Query: 327 TKSDLY--STYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K DL       E+  H             S+  GEG+ +L+++I   L       P   
Sbjct: 124 NKIDLAKPEDIEEKIQHWKAVFQPTEILTLSALQGEGVPQLMDRILHYLPVHPPYFPKDE 183

Query: 374 PSHKRHLYHLSQTVR 388
            + K   +  ++ +R
Sbjct: 184 LTDKPERFFAAEMIR 198


>gi|189502490|ref|YP_001958207.1| GTP-binding protein Era [Candidatus Amoebophilus asiaticus 5a2]
 gi|226741166|sp|B3ETC6|ERA_AMOA5 RecName: Full=GTPase Era
 gi|189497931|gb|ACE06478.1| hypothetical protein Aasi_1141 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 296

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 82/208 (39%), Gaps = 21/208 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I+T    TTR  +   +    + +  +DT GI +  
Sbjct: 11  VTIIGKPNVGKSTLMNRLVGERLSIITPKAQTTRHSICGIVSDTDFQIIFTDTPGILKPA 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN------IDFIFIGTKSDLYS-- 333
             +++  +      + + D++L L +I  K+     +       I  + +  K DL +  
Sbjct: 71  YELQESMMHMLQHALVDTDVLLWLVDIKEKEVPPIVEKVLAQGRIPVLLLINKIDLIAGQ 130

Query: 334 ------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                                I++  G  +E+L+  I   L       P  + + +   +
Sbjct: 131 EALESLVEYWKQKVNVAQIIPIAALQGFQIEQLLKHILVYLPAHPPFYPKDMLTDRPERF 190

Query: 382 HLSQTVRYLEMAS-LNEKDCGLDIIAEN 408
            +++ +R   +     E    ++++ E 
Sbjct: 191 FVAEIIREQILYKYQQEIPYAVEVVIEE 218


>gi|325855172|ref|ZP_08171795.1| ribosome biogenesis GTPase Era [Prevotella denticola CRIS 18C-A]
 gi|325483909|gb|EGC86853.1| ribosome biogenesis GTPase Era [Prevotella denticola CRIS 18C-A]
          Length = 293

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 83/187 (44%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTDDSQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKN-----IDFIFIGTKSD---- 330
             +++  ++ +   + +AD++L + ++  N +K + F +      I  I +  K D    
Sbjct: 67  YKMQEMMLQFSESALADADVLLYVTDVVENPEKNMDFLEKVAKMTIPVILLINKIDESDQ 126

Query: 331 -----LYSTY----TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                L   +     +     IS+    G + L+ +++ +L            + K   +
Sbjct: 127 SKLVELVEKWHGLLPDAEILPISAKNKFGTDILMKRVRELLPESPAFFDKDQLTDKPARF 186

Query: 382 HLSQTVR 388
            +S+ +R
Sbjct: 187 FVSEIIR 193


>gi|291613750|ref|YP_003523907.1| GTP-binding protein Era [Sideroxydans lithotrophicus ES-1]
 gi|291583862|gb|ADE11520.1| GTP-binding protein Era [Sideroxydans lithotrophicus ES-1]
          Length = 297

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 74/197 (37%), Gaps = 22/197 (11%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
            ++  +G+ I I+G  N GKS+L N L  + ++I +    TTR  +T  L          
Sbjct: 4   SQVFHSGF-IAIVGRPNVGKSTLLNHLIGQKISITSRKAQTTRHRITGILTEADTQFVFV 62

Query: 273 DTAGIRETDDIVEKEGIKRTFL-EVENADLILLLKEINSKKEIS------FPKNIDFIFI 325
           DT G +         G+ R     +   +++L + E     E         P++   I +
Sbjct: 63  DTPGFQTQHTNALNRGMNRVVTNSLREVNVVLFVLEARQFDERDQQVMGLLPQDRPVILV 122

Query: 326 GTKSDLYSTYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
             K+DL +  +E                   +S+  G+ L+ L+  I+  +         
Sbjct: 123 INKADLLADKSELLPFIEKISALRHFAAIVPVSARQGKQLDTLLEAIRPYIPEGEHLYAE 182

Query: 372 SIPSHKRHLYHLSQTVR 388
              + +   +  ++ +R
Sbjct: 183 DEITDRNERFLAAELLR 199


>gi|125718416|ref|YP_001035549.1| GTP-binding protein Era [Streptococcus sanguinis SK36]
 gi|323351170|ref|ZP_08086826.1| GTP-binding protein Era [Streptococcus sanguinis VMC66]
 gi|189037679|sp|A3CP94|ERA_STRSV RecName: Full=GTPase Era
 gi|125498333|gb|ABN44999.1| Era-like GTP-binding protein, putative [Streptococcus sanguinis
           SK36]
 gi|322122394|gb|EFX94105.1| GTP-binding protein Era [Streptococcus sanguinis VMC66]
 gi|324991449|gb|EGC23382.1| GTP-binding protein Era [Streptococcus sanguinis SK353]
 gi|325687311|gb|EGD29333.1| GTP-binding protein Era [Streptococcus sanguinis SK72]
 gi|325690752|gb|EGD32753.1| GTP-binding protein Era [Streptococcus sanguinis SK115]
 gi|325696180|gb|EGD38071.1| GTP-binding protein Era [Streptococcus sanguinis SK160]
 gi|327470591|gb|EGF16047.1| GTP-binding protein Era [Streptococcus sanguinis SK330]
 gi|328946703|gb|EGG40841.1| GTP-binding protein Era [Streptococcus sanguinis SK1087]
 gi|332358996|gb|EGJ36817.1| GTP-binding protein Era [Streptococcus sanguinis SK49]
 gi|332362403|gb|EGJ40203.1| GTP-binding protein Era [Streptococcus sanguinis SK1056]
          Length = 299

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L +   +       +    IS+  G  +  LI+ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRQQMDFKEIVPISALQGNNVSHLIDILSENLEEGFQYFPEDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|148553135|ref|YP_001260717.1| GTP-binding protein Era [Sphingomonas wittichii RW1]
 gi|148498325|gb|ABQ66579.1| GTP-binding protein Era [Sphingomonas wittichii RW1]
          Length = 297

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 77/208 (37%), Gaps = 23/208 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L NAL  + VAIV+    TTR  L          + + DT G
Sbjct: 4   RCGF-VAVVGAPNAGKSTLVNALVGQKVAIVSPKAQTTRTRLIGVAIAGESQILLVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE--------INSKKEISFPKNIDFIFIGTK 328
           I      +++  +   +   ++ADLI  + +        I    +    +    + +  K
Sbjct: 63  IFAPRRRLDRAMVAAAWGGAQDADLIAFVIDAKTGITHRIGELLDTLAQRREPKLVVLNK 122

Query: 329 SD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D             L      E   ++S+ TG+G+ +L   +   +       P    S
Sbjct: 123 VDICSKESLLELAVRLQEKLAPEAIFMVSAATGDGVADLRQTLADRVPEGPWHFPEEQVS 182

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLD 403
                   ++  R      L+  +   D
Sbjct: 183 DATDRMLAAEVTREQLYLQLHA-ELPYD 209


>gi|42520585|ref|NP_966500.1| GTP-binding protein Era [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410324|gb|AAS14434.1| GTP-binding protein Era [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 294

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 23/164 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G  NAGKS+L N++  K +AIVT    TTR  +          +  +D+ GI   +
Sbjct: 9   VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQIVFTDSPGIFSAE 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFPK---------NIDFIFIGTKSDL 331
             +EK  +K  +  V+++D+ L L ++++  K I   K             I +  K+DL
Sbjct: 69  TKLEKALVKSAWSAVKDSDITLSLVDVSNYLKNIERIKTIFMRLQRTKGRCILVINKTDL 128

Query: 332 YST-------------YTEEYDHLISSFTGEGLEELINKIKSIL 362
                           Y  E   +IS+   +GL +L+N +  + 
Sbjct: 129 VKRPELKMAHEHLNLLYKFEKVFMISALKNDGLSDLMNYLSEVA 172


>gi|117924216|ref|YP_864833.1| GTP-binding protein Era [Magnetococcus sp. MC-1]
 gi|117607972|gb|ABK43427.1| GTP-binding protein Era [Magnetococcus sp. MC-1]
          Length = 303

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 81/212 (38%), Gaps = 25/212 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+  N +  + +AIV+  P TTR  +   L+ +   +   DT G
Sbjct: 6   RSGF-VAIVGRPNMGKSTFLNRVMGQKLAIVSPKPQTTRTRVLGALNRDNCQIVFLDTPG 64

Query: 277 IRETD-DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEI--SFPKNI-DFIFIGT 327
           I +   +++ +  ++      +  D +L   +          EI    P+       I  
Sbjct: 65  IHKAGKNLLNRAMVQTAMQSCQEVDAVLYFVDAQRGVTEGDLEIVQRLPRGEAPIYLIIN 124

Query: 328 KSDLY--------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D                S    +    IS+  G  ++ L+  + + +    +  P  +
Sbjct: 125 KVDQIPQESLLPLLAKAGESGLPFDEVIPISALEGSNVDYLVGLLDAKMVEGPRYFPEGM 184

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
            + +   +   + VR     +L +++    + 
Sbjct: 185 VTDQPERFIAGEIVREKLFLNL-QQELPYALA 215


>gi|326504644|dbj|BAK06613.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 303

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 25/219 (11%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           +  L L ++  S      L    R+GY + +LG  N GKS+L N +  + ++IVTD P T
Sbjct: 78  DRSLALLDEYESEELGAALCANHRSGY-VAVLGKPNVGKSTLINQIVGQKLSIVTDKPQT 136

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TR  +        Y + + DT G+ + +   ++   +K     + NAD ++++ + +   
Sbjct: 137 TRHRILGICSEPEYQIILYDTPGVIKKEMHKLDSMMMKNVQSAIGNADCVIVVADASKVP 196

Query: 313 EISF----------PKNIDFIFIGTKSDL------------YSTYTEEYDHLISSFT-GE 349
           E                +  + +  K D+            Y  +T+  D +  S   G 
Sbjct: 197 EKIDDMLEEGVGNKETKVPVVLVLNKKDMIKPGEIAKKLEWYQKFTDVDDVIPISAKFGH 256

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           G++++   I S L       P  I S     + + + VR
Sbjct: 257 GVDDIKEWILSKLPLGPAYYPKDIASEHPERFFVGEIVR 295


>gi|283853446|ref|ZP_06370690.1| GTP-binding protein Era [Desulfovibrio sp. FW1012B]
 gi|283571166|gb|EFC19182.1| GTP-binding protein Era [Desulfovibrio sp. FW1012B]
          Length = 294

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 28/203 (13%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           +LG +NAGKS+L N +  + V+IV+  P TTR+ ++  L  EG      DT G+      
Sbjct: 1   MLGPTNAGKSTLLNRVIGQKVSIVSPKPQTTRNSISGILTEEGAQAVFLDTPGLHRQKRG 60

Query: 284 VEKEGIKRTFLEVENADLILLLKEI------------NSKKEISFPKNIDFIFI--GTKS 329
           +    ++  +  +  AD++L+L +             +    +   K+     +    K+
Sbjct: 61  IAPLLLRSAYAALTRADVVLVLLDGAQYARRLEGLKNDLLPIVRVLKDSPVPVVVALNKA 120

Query: 330 DLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           D+                         +S+ TG G++EL+  + + L     +      S
Sbjct: 121 DVVREKARMLPVLAAVGEALPGAELFPVSALTGLGVKELLAALFARLPEGPHQFDPDEVS 180

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                +  S+ VR     +L E+
Sbjct: 181 TAPVRFLASEIVREKVFLALGEE 203


>gi|313891295|ref|ZP_07824913.1| ribosome biogenesis GTPase Era [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313120362|gb|EFR43483.1| ribosome biogenesis GTPase Era [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 299

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTEQEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKS---- 329
             +    ++  +  +   D +L +   + K+        E      I  I +  K     
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMIMERLRNAKIPVILVINKIDKVH 127

Query: 330 ---------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLEQIDDFRSQMDFKEIVPISALEGNNIPTLMSLLTDNLEEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|330996163|ref|ZP_08320053.1| hydrogenase maturation GTPase HydF [Paraprevotella xylaniphila YIT
           11841]
 gi|329573667|gb|EGG55258.1| hydrogenase maturation GTPase HydF [Paraprevotella xylaniphila YIT
           11841]
          Length = 399

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAG 276
           N + I + G  N+GKSSL N L  ++VA+V+D+PGTT DV+  +++L G     + DTAG
Sbjct: 10  NRFHIGLFGRRNSGKSSLVNMLTGQEVAVVSDVPGTTTDVILKNIELPGIGASVLVDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISF-----PKNIDFIFIGTK 328
             +  ++     +K+T       DL L++       ++KE ++       +I  ++I  K
Sbjct: 70  YDDEGELGGLR-VKQTVNAARWVDLALIVVSGLPDGAEKEKAWGERFQADDIPVLYIYNK 128

Query: 329 SDL---------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D           +         +S+ TGEG + L++ +  +     +    +
Sbjct: 129 VDEDGGSHAGAWRTALGATDVVSVSARTGEGRDCLLSAMAEVYRRTDEVEDLT 181


>gi|94497605|ref|ZP_01304174.1| GTP-binding protein Era [Sphingomonas sp. SKA58]
 gi|94423022|gb|EAT08054.1| GTP-binding protein Era [Sphingomonas sp. SKA58]
          Length = 302

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 72/196 (36%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G  + I+G  NAGKS+L NAL  + VAI +    TTR  +          + + D
Sbjct: 6   ESQRCGV-VAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQIVLVD 64

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
           T GI      +++  ++  +   + ADLI L+ +  +          E    ++     +
Sbjct: 65  TPGIFAPKRRLDRAMVQAAWGGAQGADLIALVVDGKAGLGPKMEPIVEALVHRSERKWLV 124

Query: 326 GTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D             LY     E    IS+ TG+GL +L       +       P  
Sbjct: 125 LNKVDIAIKEKLLVHTQKLYERVGFEETFFISAQTGDGLAQLKTAFADAMPQGPWHFPED 184

Query: 373 IPSHKRHLYHLSQTVR 388
             S        ++  R
Sbjct: 185 QVSDATDRMLAAEITR 200


>gi|34497522|ref|NP_901737.1| GTP-binding protein Era [Chromobacterium violaceum ATCC 12472]
 gi|81711814|sp|Q7NWC3|ERA_CHRVO RecName: Full=GTPase Era
 gi|34103377|gb|AAQ59739.1| GTP-binding protein [Chromobacterium violaceum ATCC 12472]
          Length = 296

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 84/218 (38%), Gaps = 28/218 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +    TTR  +T     +       DT G +   
Sbjct: 11  VAIVGRPNVGKSTLMNHLIGQKISITSKKSQTTRHRVTGIHTEDAAQFVFVDTPGFQTYH 70

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSD---- 330
                E + ++    + + D +L L E       + +     PK    I +  K D    
Sbjct: 71  KGALNEALNKSVKDSLGSVDCVLFLLEAMRFTAADREVMALLPKKTPVILVVNKLDKAKD 130

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                      T E++     ++S+  G+ L EL+++++  L       P  + + K   
Sbjct: 131 KLTLQAFIDEVTAEFEFAGVEVVSAKHGQRLAELLDQVRPHLPESMPLYPEDMITDKNER 190

Query: 381 YHLSQTV-----RYLEMASLNEKDCGLDIIAEN--LRL 411
           +  ++ V     RYL      E +  +++   +  LR 
Sbjct: 191 FLAAEIVREKLFRYLGEELPYEMNVEVEMFEMDGALRR 228


>gi|255533658|ref|YP_003094030.1| GTP-binding protein Era [Pedobacter heparinus DSM 2366]
 gi|255346642|gb|ACU05968.1| GTP-binding protein Era [Pedobacter heparinus DSM 2366]
          Length = 295

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 19/186 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + ++I+T    TTR  +   ++ E Y +  SDT GI +  
Sbjct: 8   VSIIGKPNVGKSTLMNALVGEKLSIITPKAQTTRHRILGIVNEESYQIVFSDTPGIIKPL 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE----ISFPKNIDFIFI--GTKSDLY--- 332
             ++   +      + +ADLIL + +IN + +    +    N +   +    K D     
Sbjct: 68  YGLQDSMMNSVKGALTDADLILFVTDINEQHDENDVLEKITNTEIPLVVLLNKIDNATQE 127

Query: 333 ----------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                          ++   IS+     LE +++ +   L            + +   + 
Sbjct: 128 QVDEKVAYWQEKLNPKHIFAISALHQYNLEGIMSMVLDYLPEHAPFYDKEDLTDRSQRFF 187

Query: 383 LSQTVR 388
           +S+ +R
Sbjct: 188 VSEIIR 193


>gi|55820698|ref|YP_139140.1| GTP-binding protein Era [Streptococcus thermophilus LMG 18311]
 gi|55736683|gb|AAV60325.1| GTP-binding protein [Streptococcus thermophilus LMG 18311]
          Length = 299

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDLY- 332
             +    ++  +  +   D +L +   +  +       I   K   +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKQAKVPVILVVNKIDKVH 127

Query: 333 -STYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                E+ D             IS+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLEQIDDFRKQMDFKEIIPISALQGNNVSHLVDVLSDNLEEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|322372543|ref|ZP_08047079.1| GTP-binding protein Era [Streptococcus sp. C150]
 gi|321277585|gb|EFX54654.1| GTP-binding protein Era [Streptococcus sp. C150]
          Length = 299

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDLY- 332
             +    ++  +  +   D +L +   +  +       I   K   +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKQAKVPVILVVNKIDKVH 127

Query: 333 -STYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                E+ D             IS+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLEQIDDFRTQMDFKEIIPISALQGNNVSHLVDVLSDNLEEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|289550662|ref|YP_003471566.1| GTP-binding protein Era [Staphylococcus lugdunensis HKU09-01]
 gi|315658157|ref|ZP_07911029.1| GTP-binding protein Era [Staphylococcus lugdunensis M23590]
 gi|289180194|gb|ADC87439.1| GTP-binding protein Era [Staphylococcus lugdunensis HKU09-01]
 gi|315496486|gb|EFU84809.1| GTP-binding protein Era [Staphylococcus lugdunensis M23590]
          Length = 299

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   DT GI +  
Sbjct: 9   VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY- 332
             +    ++     +   D I+ +  +N           ++          +  K DL  
Sbjct: 69  HKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMDMLRNVKTPVFLVLNKIDLVH 128

Query: 333 ----STYTEEYDHLI--------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                   E Y   +        S+  G  ++  I+ +KS L    K  P    S     
Sbjct: 129 PDSLMPRIEAYQKYMNFTEIVPISALEGLNVDHFIDVLKSHLPEGPKYYPDDQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 189 FVVSEIIR 196


>gi|291166725|gb|EFE28771.1| GTP-binding protein Era [Filifactor alocis ATCC 35896]
          Length = 301

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 88/209 (42%), Gaps = 23/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS++ N +  + V+IV++ P TTR+ ++   + E   +   DT G++   
Sbjct: 10  VSIIGRPNVGKSTILNWIIGEKVSIVSNKPQTTRNRISGIYNDEDCQIVFLDTPGMQNPR 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---------KKEISFPKNIDFIFIGTKSDLY 332
           + + K  +K +   +++ DLI+ + + +S          +++    N     +  K D  
Sbjct: 70  NKLGKYMLKASTSTMKDTDLIMCVVDTSSYIGRMDKNIMEQLKHTSNTKI-LVINKMDQI 128

Query: 333 STYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                             +    +S+  G+ ++ ++  ++  L+   K  P  + + +  
Sbjct: 129 PKEEALKIISMYDALGIFDEIIPVSALKGDNMDSIVPTLQKYLTYGPKFYPDDVATDQTL 188

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
              +S+ +R   +   +E+     ++   
Sbjct: 189 KVMISEIIREKILLYTDEEIPHGTMVQIE 217


>gi|327312577|ref|YP_004328014.1| ribosome biogenesis GTPase Era [Prevotella denticola F0289]
 gi|326944896|gb|AEA20781.1| ribosome biogenesis GTPase Era [Prevotella denticola F0289]
          Length = 293

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 81/187 (43%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTDDSQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKN-----IDFIFIGTKSDLYST 334
             +++  ++ +   + +AD++L + ++  N +K + F +      I  I +  K D    
Sbjct: 67  YKMQEMMLQFSESALADADVLLYVTDVVENPEKNMDFLEKVAKMTIPVILLINKIDESDQ 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                          +     IS+    G + L+ +++ +L            + K   +
Sbjct: 127 SKLVELVEKWHGLLPDAEILPISAKNKFGTDILMKRVRELLPESPAFFDKDQLTDKPARF 186

Query: 382 HLSQTVR 388
            +S+ +R
Sbjct: 187 FVSEIIR 193


>gi|315122354|ref|YP_004062843.1| GTP-binding protein Era [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495756|gb|ADR52355.1| GTP-binding protein Era [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 310

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 21/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N      V+IVT    TTR ++   +  +   V   DT GI +  
Sbjct: 23  VALVGATNAGKSTLVNKFVGAKVSIVTHKVQTTRSIVRGIVSEKDVQVVFLDTPGIFKAK 82

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSDLYS 333
           D   K  I+ ++  V++AD++ L+ + N   +            ++   + I  K D   
Sbjct: 83  DSYHKMMIRLSWSTVKHADIVFLVIDSNRGLQPDVHDILKEIGKRSGRLVLILNKIDCVK 142

Query: 334 TYTE-------------EYDHLISSFTGEGLEELINKIKSILS 363
                            E   ++S+  G G ++++N + S L 
Sbjct: 143 PERLLEQAEIINKLVCVEKTFMVSALKGHGCQDVLNYLYSTLP 185


>gi|312863009|ref|ZP_07723247.1| ribosome biogenesis GTPase Era [Streptococcus vestibularis F0396]
 gi|322517151|ref|ZP_08070035.1| GTP-binding protein Era [Streptococcus vestibularis ATCC 49124]
 gi|311100545|gb|EFQ58750.1| ribosome biogenesis GTPase Era [Streptococcus vestibularis F0396]
 gi|322124301|gb|EFX95812.1| GTP-binding protein Era [Streptococcus vestibularis ATCC 49124]
          Length = 299

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTEKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDLY- 332
             +    ++  +  +   D +L +   +  +       I   K   +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKQAKVPVILVVNKIDKVH 127

Query: 333 -STYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                E+ D             IS+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLEQIDDFRKQMDFKEIIPISALQGNNVSHLVDVLSDNLEEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|212696573|ref|ZP_03304701.1| hypothetical protein ANHYDRO_01111 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676429|gb|EEB36036.1| hypothetical protein ANHYDRO_01111 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 325

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 11/167 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               + +LG +N+GKSS  N ++ +DV+IV+   GTT D +   +++  +  V   DTAG
Sbjct: 7   ERLSLALLGKTNSGKSSFLNFISDQDVSIVSSQKGTTTDPIKKSMEIHDFGPVLFFDTAG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP---KNIDFIFIGTKS---- 329
             +  ++ EK  I++T   VE +D++L    I+ K E  +    K    IFI +K     
Sbjct: 67  FDDNTNLYEKR-IEKTKKAVEKSDILLYFLSIDDKIEEIYALKEKYKKIIFIASKQDLEI 125

Query: 330 --DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             DL   + +     I+       E+  +KIKS    +   +  S+ 
Sbjct: 126 GNDLLEKFKDFSPLAINIKNNHDREKFFDKIKSTYKIEDNSITKSLV 172


>gi|322509029|gb|ADX04483.1| era [Acinetobacter baumannii 1656-2]
          Length = 340

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 77/210 (36%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +
Sbjct: 40  VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSCEKMQAVYVDTPGMHKKE 99

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + K   +     + + +L+L + +        ++   K    ++  I +  K+D + 
Sbjct: 100 VRAINKMMNRAAHSALRDVNLVLFVIDAQKWTQNDDLVLEKLKNADMPVILVINKADTFG 159

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E    +               S+  G  LE L   I+  L  +         + +  
Sbjct: 160 DKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSIDQITDRSE 219

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M  L E +   D+ +   
Sbjct: 220 RFLASEIIREKIMRQLGE-ELPYDLTVQIE 248


>gi|164687205|ref|ZP_02211233.1| hypothetical protein CLOBAR_00846 [Clostridium bartlettii DSM
           16795]
 gi|164603629|gb|EDQ97094.1| hypothetical protein CLOBAR_00846 [Clostridium bartlettii DSM
           16795]
          Length = 407

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 17/159 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSS+ NA+  +D+AIV+D+ GTT D ++  ++L     V I DT G
Sbjct: 10  ERVHIGIFGKRNAGKSSVINAITDQDLAIVSDVKGTTTDPVSKAMELLPLGPVMIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTK 328
           + +  ++  K  +++++  +   D+ +L+ +         N+  E    K I +I +  K
Sbjct: 70  LDDVGELG-KMRVQKSYQVLNKTDIGILVIDGLVGPTPQDNTLIEKFKEKKIPYIVVMNK 128

Query: 329 SDLYSTYTEEYDH-------LISSFTGEGLEELINKIKS 360
            DL      E           +SS T E + EL   I  
Sbjct: 129 LDLVREKGIELPLEDSPNTMWVSSVTKENIYELKELIAK 167


>gi|307243742|ref|ZP_07525882.1| hydrogenase maturation GTP-binding protein HydF [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492951|gb|EFM64964.1| hydrogenase maturation GTP-binding protein HydF [Peptostreptococcus
           stomatis DSM 17678]
          Length = 399

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 2/118 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           I N   IV++G+ N+GKSSLFN +  +D++IV+D  GTT D +  +++L GY  V+I DT
Sbjct: 6   IANRKTIVLVGNRNSGKSSLFNLILGQDMSIVSDYAGTTTDPVGRNMELIGYGPVRIIDT 65

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLY 332
           AG+ +  D+ +   +++T LE+  ADL++ +     + +       D      K  +Y
Sbjct: 66  AGLDDLGDLGQMR-VRKTQLEIGEADLVVHVFNAGYEGKQDLLDARDRYEKLNKKAIY 122


>gi|332284935|ref|YP_004416846.1| GTP-binding protein [Pusillimonas sp. T7-7]
 gi|330428888|gb|AEC20222.1| GTP-binding protein [Pusillimonas sp. T7-7]
          Length = 295

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 72/193 (37%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL    ++IV+    TTR  +   L  +       DT G
Sbjct: 6   RCGF-VAVVGRPNVGKSTLTNALIGSKISIVSRKAQTTRHRIHGVLTRDHEQFVFVDTPG 64

Query: 277 IRETDDIVEKEGIKRTF-LEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKS 329
            +          + R     + + D+ + + E       +++     PK    I    K 
Sbjct: 65  FQTRHGGTMNRMMNRVVTQALADVDVTVHVVEAGKWSAGDAQLLPLLPKTGHTILAVNKV 124

Query: 330 DLYSTYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           D   +  + + +               +S+  G  LE L+ +I + L            +
Sbjct: 125 DALKSKNDMFVYVSKIMAQHPYSAVVPVSALRGVQLENLLQEIATRLPEGEPMFEADTLT 184

Query: 376 HKRHLYHLSQTVR 388
            +   + +++ VR
Sbjct: 185 DRPMRFIVAELVR 197


>gi|119493602|ref|ZP_01624266.1| GTP-binding protein Era [Lyngbya sp. PCC 8106]
 gi|119452592|gb|EAW33775.1| GTP-binding protein Era [Lyngbya sp. PCC 8106]
          Length = 312

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 78/205 (38%), Gaps = 23/205 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + I+G  N GKS+L N +  + +AI + +  TTR+ L   L      +   DT 
Sbjct: 18  YKSGF-VGIIGRPNVGKSTLMNQMVGQKIAITSPVAQTTRNRLRGILTTPEAQIIFVDTP 76

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFI--GT 327
           GI +    + +  +K   + + + D++L + + +       +       +     I    
Sbjct: 77  GIHKPHHQLGQVLVKNAQIAIRSVDVLLFVVDGSVMAGGGDRFIADLLNSTKVPVILGLN 136

Query: 328 KSDLYSTYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D      +  +                 S+ TG G++ L + I   L       P  +
Sbjct: 137 KLDQQPQEPQRINESYQQLIESHSWPILQFSALTGTGVDSLQHLIIEQLEPGPYYYPPDL 196

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            + +   + + + +R   +    E+
Sbjct: 197 VTDQPERFIMGELIREQILLHTREE 221


>gi|317495247|ref|ZP_07953617.1| GTP-binding protein Era [Gemella moribillum M424]
 gi|316914669|gb|EFV36145.1| GTP-binding protein Era [Gemella moribillum M424]
          Length = 302

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 91/215 (42%), Gaps = 23/215 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E I+ G+ + I+G  NAGKS+L N + K+ +AI++D P TTR+++      +   +   D
Sbjct: 4   EQIKTGF-VTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRNIINGVYTDQDSQIVFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFI 325
           T GI +    +    +K     ++ ++++ L+     K          I    N+    +
Sbjct: 63  TPGIHKPKHRLGDYMMKLASSAIQESEIVYLIINAGEKFGPGDQHLINIVKELNVPTFLL 122

Query: 326 GTKSDLYST---------YTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL S          Y + YD      IS+     ++ L+N  K  L   +K  P  
Sbjct: 123 INKIDLISPEKLIEIISFYKDLYDFVEIVPISALKSINVDNLLNVTKKYLQLSYKMYPDD 182

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           + +     + +S+ +R  ++  L  ++    I   
Sbjct: 183 VITDSPEYFVISEFIRE-KVLQLTSQEIPHSIAVI 216


>gi|194290151|ref|YP_002006058.1| gtp-binding protein era [Cupriavidus taiwanensis LMG 19424]
 gi|193223986|emb|CAQ69995.1| 30S ribosomal subunit_binding GTPase [Cupriavidus taiwanensis LMG
           19424]
          Length = 311

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 64/190 (33%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + ++I +    TTR  +      +       DT G +   
Sbjct: 24  VAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRIVGIQTTDDAQYVFVDTPGFQTRH 83

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + DLIL + E       + K     PKN   + +  K D    
Sbjct: 84  ASALNRSLNRAVTSTLSSVDLILFVVEAGYYGADDEKVLSLLPKNTPVLLVANKLDRIGE 143

Query: 335 YTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
              E                    +S+ T + +  L   I+  L            + + 
Sbjct: 144 NRSEVMMPFLEKMGQLFPFREVVPMSAKTRDHIARLFEIIRPYLPEGEPMYDADAMTDRS 203

Query: 379 HLYHLSQTVR 388
             +  S+ +R
Sbjct: 204 ERFLASEIIR 213


>gi|167753498|ref|ZP_02425625.1| hypothetical protein ALIPUT_01772 [Alistipes putredinis DSM 17216]
 gi|167658123|gb|EDS02253.1| hypothetical protein ALIPUT_01772 [Alistipes putredinis DSM 17216]
          Length = 293

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 21/149 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I+T    TTR  +   +  E + +  SDT GI +  
Sbjct: 7   VNIIGNPNVGKSTLMNALVGERLSIITSKAQTTRHRILGVVSGEDFQIVFSDTPGILKPS 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-------INSKKEISFPKNIDFIFIGTKSDLYST 334
             +++  +K     V +AD+IL + +        N   E     +I  + +  K DL   
Sbjct: 67  YKLQESMMKFVTGAVNDADVILYVTDTVEQSDRSNDILEKIRQSDIPTLAVINKIDLT-- 124

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILS 363
                       T E LEEL++K +++L 
Sbjct: 125 ------------TPEKLEELVDKWQALLP 141


>gi|107022211|ref|YP_620538.1| GTP-binding protein Era [Burkholderia cenocepacia AU 1054]
 gi|116689157|ref|YP_834780.1| GTP-binding protein Era [Burkholderia cenocepacia HI2424]
 gi|254245910|ref|ZP_04939231.1| GTP-binding protein Era [Burkholderia cenocepacia PC184]
 gi|105892400|gb|ABF75565.1| GTP-binding protein Era [Burkholderia cenocepacia AU 1054]
 gi|116647246|gb|ABK07887.1| GTP-binding protein Era [Burkholderia cenocepacia HI2424]
 gi|124870686|gb|EAY62402.1| GTP-binding protein Era [Burkholderia cenocepacia PC184]
          Length = 299

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T     +       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D+IL + E       + K     P  +  + I  K D  + 
Sbjct: 74  STALNRSLNRAVTSTLTSVDVILFVIEAGRFGPDDQKVLDLIPPGMPTLLIANKIDRVND 133

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               +  +               S+   E ++ L++ IK  L            + +   
Sbjct: 134 KATLFPFMQKVSELREFTELVPLSAQKPEDIKRLLDTIKPYLPEGEPIYGEDELTDRSSR 193

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 194 FLAAEILR 201


>gi|306825398|ref|ZP_07458738.1| GTP-binding protein Era [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432336|gb|EFM35312.1| GTP-binding protein Era [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 299

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L +   +  + +        S+  G  +  LI+ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRNQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|116627505|ref|YP_820124.1| GTP-binding protein Era [Streptococcus thermophilus LMD-9]
 gi|116100782|gb|ABJ65928.1| GTPase [Streptococcus thermophilus LMD-9]
 gi|312278024|gb|ADQ62681.1| GTP-binding protein [Streptococcus thermophilus ND03]
          Length = 299

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDLY- 332
             +    ++  +  +   D +L +   +  +       I   K   +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIKRLKQAKVPVILVVNKIDKVH 127

Query: 333 -STYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                E+ D             IS+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLEQIDDFRKQMDFKEIIPISALQGNNVSHLVDVLSDNLEEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|308388874|gb|ADO31194.1| putative GTPase [Neisseria meningitidis alpha710]
          Length = 311

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 24/210 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + +++ +  +  R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 6   DIETFLAEERAADGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 64

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLK------EINSKKEI 314
              +       DT G +        + + +     +   D ++ +       + +     
Sbjct: 65  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDADRVVLK 124

Query: 315 SFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELINKI 358
             PK+   + +  K D                + + +       +S+  G  +  L+  I
Sbjct: 125 QLPKHTPVVLVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELI 184

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           K  L       P  + + K   +   + VR
Sbjct: 185 KPYLPESVPMYPEDMVTDKSARFLAMEIVR 214


>gi|149002005|ref|ZP_01826959.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|147759814|gb|EDK66804.1| phosphoglycerate dehydrogenase-related protein [Streptococcus
           pneumoniae SP14-BS69]
          Length = 92

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 45/83 (54%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+LFN +A + ++IV D+ G TRD +    +       + DT GI + D
Sbjct: 6   IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65

Query: 282 DIVEKEGIKRTFLEVENADLILL 304
               ++   +  + +E AD+I+ 
Sbjct: 66  APFMEQIKHQAEIAMEEADVIVF 88


>gi|153816261|ref|ZP_01968929.1| hypothetical protein RUMTOR_02510 [Ruminococcus torques ATCC 27756]
 gi|145846444|gb|EDK23362.1| hypothetical protein RUMTOR_02510 [Ruminococcus torques ATCC 27756]
          Length = 408

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 82/183 (44%), Gaps = 25/183 (13%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++   + E +  G+     G  NAGKSS+ NA+  +D+A+V+D+ GTT D +   ++L  
Sbjct: 3   LNNTPMSERVHIGF----FGRRNAGKSSVMNAVTGQDLAVVSDVKGTTTDPVYKSMELLP 58

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFP 317
              V + DT GI +  ++  K  +K+++  +   D  +L+ +  +          E    
Sbjct: 59  IGPVVMIDTPGIDDEGELG-KLRVKKSYQTLNKTDAAVLVIDAAAGVSGEDKKLLEKIKA 117

Query: 318 KNIDFIFIGTKSDLYSTYTEE-----------YDHLISSFTGEGLEELINKIKSILSNKF 366
           K I ++    K +L      E           +   +S+  G+G+ EL  KI + +  + 
Sbjct: 118 KKIPYVVALNKKELAEEEDMERIKKELDSDGGWIIEVSAAAGDGICELKEKIAAAVHQEE 177

Query: 367 KKL 369
            + 
Sbjct: 178 TEN 180


>gi|47459181|ref|YP_016043.1| GTP-binding protein Era [Mycoplasma mobile 163K]
 gi|47458510|gb|AAT27832.1| GTP-binding protein era [Mycoplasma mobile 163K]
          Length = 297

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRET 280
            I+G  NAGKSSL N+L K+ V+I+++ P TTRD +T     E        +DT GI ++
Sbjct: 11  TIIGKPNAGKSSLLNSLLKESVSIISNKPQTTRDQITGIYSDEANTEQFVFTDTPGIHKS 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-SKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
              + K+  + ++  +++ DL+L L  I+   +EI      +   +  K  + +      
Sbjct: 71  KTELGKKMNEYSYSSIKDIDLVLFLSPIDYEVEEIDLEIISNLENVKNKIAIVTKIDLAK 130

Query: 340 DH 341
           DH
Sbjct: 131 DH 132


>gi|295105854|emb|CBL03397.1| GTP-binding protein Era [Gordonibacter pamelaeae 7-10-1-b]
          Length = 305

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 84/187 (44%), Gaps = 24/187 (12%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
            E  ++G+ + ++G  NAGKS+L NA+  K +AI +D   TTR      L  E + + + 
Sbjct: 7   AEGFKSGF-VTLVGRPNAGKSTLINAIMGKKIAITSDTAQTTRHRFRAVLTREDFQLILV 65

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFI 323
           DT G+ +  D + +E        +E+ D++ +L + +           +++S  ++    
Sbjct: 66  DTPGLHKPHDALGEELNTSALKALEDVDVVAMLIDASQPIGRGDEWVAEQLSRVRSKKIC 125

Query: 324 FIGTKSDL-----------YSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLP 370
            + +K DL            +     +D ++  SS TG+ ++  + ++  +L       P
Sbjct: 126 -VLSKLDLATEKQISAQREAAEALGAWDAMVGLSSATGKNVDAFVEEVVYLLPEGPAWFP 184

Query: 371 FSIPSHK 377
             + + +
Sbjct: 185 ADMETDQ 191


>gi|188994054|ref|YP_001928306.1| GTP-binding protein Era [Porphyromonas gingivalis ATCC 33277]
 gi|188593734|dbj|BAG32709.1| putative GTP-binding protein [Porphyromonas gingivalis ATCC 33277]
          Length = 299

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G+ N GKS+L N L  + ++I+T    TTR  +   ++     +  SDT G
Sbjct: 9   RSGF-VNIVGNPNVGKSTLMNLLVGERISIITSKAQTTRHRIMGIVNTPEMQIVYSDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-------PKNIDFIFIGTKS 329
           +   +  +++E  + +   + +AD+++ + ++  K + +              + +  K 
Sbjct: 68  VLRPNYKLQQEMREFSESALGDADVLVYVTDVVEKADKNADFLARVSRMECPVLLVINKI 127

Query: 330 DLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           DL +    E               H +S+     +  L  +I+S++            + 
Sbjct: 128 DLSNQEALEKLVEEWRNILPKAEIHPLSATNNFNVGLLQKRIESLIPPSPPYFEKDALTD 187

Query: 377 KRHLYHLSQTVR 388
           K   + +++ +R
Sbjct: 188 KPARFFVTEIIR 199


>gi|319946540|ref|ZP_08020775.1| GTP-binding protein Era [Streptococcus australis ATCC 700641]
 gi|319747286|gb|EFV99544.1| GTP-binding protein Era [Streptococcus australis ATCC 700641]
          Length = 299

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKS---- 329
             +    ++  +  +   D +L +   +  +        E      +  I +  K     
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 330 ---------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +  LI+ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRSQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|317501762|ref|ZP_07959948.1| small GTP-binding protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088717|ref|ZP_08337627.1| hypothetical protein HMPREF1025_01210 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896795|gb|EFV18880.1| small GTP-binding protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330407240|gb|EGG86743.1| hypothetical protein HMPREF1025_01210 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 410

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 82/183 (44%), Gaps = 25/183 (13%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++   + E +  G+     G  NAGKSS+ NA+  +D+A+V+D+ GTT D +   ++L  
Sbjct: 3   LNNTPMSERVHIGF----FGRRNAGKSSVMNAVTGQDLAVVSDVKGTTTDPVYKSMELLP 58

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFP 317
              V + DT GI +  ++  K  +K+++  +   D  +L+ +  +          E    
Sbjct: 59  IGPVVMIDTPGIDDEGELG-KLRVKKSYQTLNKTDAAVLVIDAAAGVSGEDKKLLEKIKA 117

Query: 318 KNIDFIFIGTKSDLYSTYTEE-----------YDHLISSFTGEGLEELINKIKSILSNKF 366
           K I ++    K +L      E           +   +S+  G+G+ EL  KI + +  + 
Sbjct: 118 KKIPYVVALNKKELAEEEDMERIKKELDSDGGWIIEVSAAAGDGICELKEKIAAAVHQEE 177

Query: 367 KKL 369
            + 
Sbjct: 178 TEN 180


>gi|241895551|ref|ZP_04782847.1| GTP-binding protein Era [Weissella paramesenteroides ATCC 33313]
 gi|241871129|gb|EER74880.1| GTP-binding protein Era [Weissella paramesenteroides ATCC 33313]
          Length = 302

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 72/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N +  + +AI++    TTR+ +          +   DT GI +  
Sbjct: 11  IALVGRPNVGKSTLLNKMIGEKIAIMSPKAQTTRNKIQGIYTTNEGQMIFMDTPGIHKPH 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSDLY- 332
           + +    +K     +  +D++ LL   + ++ +            N     I  K DL  
Sbjct: 71  NSLGDFMVKTAMSALRESDMVWLLVNADQERGVGDDFIIKRLKESNTPVYLIINKVDLIN 130

Query: 333 ------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                       +         IS+ TGEG+ EL+      ++   +  P    +     
Sbjct: 131 RAEVLNQIADYSAQMDFAEIFPISALTGEGVPELLAFTMDHMAAGPQYYPADQLTDHPER 190

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 191 FIMSELIR 198


>gi|310643039|ref|YP_003947797.1| gtp-binding protein era-like protein [Paenibacillus polymyxa SC2]
 gi|309247989|gb|ADO57556.1| GTP-binding protein era-like protein [Paenibacillus polymyxa SC2]
          Length = 300

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 87/219 (39%), Gaps = 23/219 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ + I+G  N GKS+L N +  + +AI++D P TTR+ +      E   +   D
Sbjct: 4   KHFKSGF-VAIVGRPNVGKSTLMNHVIGQKIAIMSDKPQTTRNKIHGVYTTEDTQIVFLD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           T GI +    +     +  F  +   + +L L +             E         I +
Sbjct: 63  TPGIHKRQSKLGDYMNQTAFNSLGEVEAVLFLIDAAEGLGGGDRFIAEQLKQVKTPVILV 122

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L   Y + YD      IS+  G  +  L+++++  L    +  P  
Sbjct: 123 LNKIDRIEPEALLPLIEQYRKLYDFAEIVPISAKMGNNVNTLLDQVQKYLPEGPQYYPDD 182

Query: 373 IPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLR 410
             +     + +++ VR  +   +  E    + ++ E+++
Sbjct: 183 QITDHPEQFVIAELVREKILHMTREEVPHSIAVMIEDMK 221


>gi|260462322|ref|ZP_05810530.1| GTP-binding protein Era [Mesorhizobium opportunistum WSM2075]
 gi|259031816|gb|EEW33084.1| GTP-binding protein Era [Mesorhizobium opportunistum WSM2075]
          Length = 306

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L    V+IVT    TTR ++      +   +   DT GI +  
Sbjct: 17  VALIGAPNAGKSTLVNQLVGAKVSIVTHKVQTTRAIVRGIAMHDNAQIVFVDTPGIFKPK 76

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKSD--- 330
             ++   +   +   ++AD++LLL +       ++   +   K+       I  K D   
Sbjct: 77  RRLDTAMVTTAWGGAKDADIVLLLIDAERGIRGDADAILERLKDVRQPMALILNKVDRVK 136

Query: 331 ------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 L +   E+       ++S+ TG G ++L++ +   L       P    S     
Sbjct: 137 HETLLALSAAANEKVPFKRTFMVSALTGSGCKDLLDYLAQALPAGPWYYPEDQISDLPMR 196

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+++
Sbjct: 197 QLAAEITREKLYLRLHQE 214


>gi|34541717|ref|NP_906196.1| GTP-binding protein Era [Porphyromonas gingivalis W83]
 gi|34398035|gb|AAQ67095.1| GTP-binding protein Era [Porphyromonas gingivalis W83]
          Length = 299

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G+ N GKS+L N L  + ++I+T    TTR  +   ++     +  SDT G
Sbjct: 9   RSGF-VNIVGNPNVGKSTLINLLVGERISIITSKAQTTRHRIMGIVNTPEMQIVYSDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-------PKNIDFIFIGTKS 329
           +   +  +++E  + +   + +AD+++ + ++  K + +              + +  K 
Sbjct: 68  VLRPNYKLQQEMREFSESALGDADVLVYVTDVVEKADKNADFLARVSRMECPVLLVINKI 127

Query: 330 DLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           DL +    E               H +S+     +  L  +I+S++            + 
Sbjct: 128 DLSNQEALEQLVEEWRNILPKAEIHPLSATNNFNVGLLQKRIESLIPPSPPYFEKDALTD 187

Query: 377 KRHLYHLSQTVR 388
           K   + +++ +R
Sbjct: 188 KPARFFVTEIIR 199


>gi|150391794|ref|YP_001321843.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF]
 gi|149951656|gb|ABR50184.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF]
          Length = 399

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 17/157 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  N GKSSL NAL  +D+A+V+ + GTT D +   +++     V + DT G
Sbjct: 8   NRLHIAIFGRRNVGKSSLINALTDQDIAVVSQVAGTTTDPVYKSMEILPIGPVLLIDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTK 328
           I +   I E   I++T   +   DL L++ +             +    K I  I +  K
Sbjct: 68  IDDEGMIGELR-IEKTKKVLGKTDLALIVTDAEIGIGEYEEGLIDTIRSKEIPIIIVYNK 126

Query: 329 SDLY-------STYTEEYDHLISSFTGEGLEELINKI 358
            DL+       + Y        S+    G+E L  +I
Sbjct: 127 IDLFHASKDISTEYLTIPIVSTSAKANSGIEALKQRI 163


>gi|197303809|ref|ZP_03168845.1| hypothetical protein RUMLAC_02548 [Ruminococcus lactaris ATCC
           29176]
 gi|197297102|gb|EDY31666.1| hypothetical protein RUMLAC_02548 [Ruminococcus lactaris ATCC
           29176]
          Length = 417

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 24/181 (13%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LE 265
           ++Q    E    G+     G  NAGKSS+ NA+  +++A+V+++ GTT D +   ++ L 
Sbjct: 3   LNQTPAAERPHIGF----FGCRNAGKSSIVNAVTGQNLAVVSNVKGTTTDPVVKAMELLP 58

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK---- 318
              V + DT GI + D  + K  +++++  +   DL +++ +  +   K++ +  K    
Sbjct: 59  AGPVVMIDTPGIDD-DGELGKLRVEKSYQMLNRTDLAIVVIDGGTGIKKEDFALLKEIEK 117

Query: 319 -NIDFIFIGTKSDLYS----------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
             + FI    KSDL               EE    +S+ TGEG+ EL  +I   +  +  
Sbjct: 118 RKVPFIIAVNKSDLLKEHRIQSKGRGKVPEESLIYVSAETGEGIRELKKRIGESICTEKN 177

Query: 368 K 368
           K
Sbjct: 178 K 178


>gi|332982748|ref|YP_004464189.1| iron-only hydrogenase maturation protein HydF [Mahella
           australiensis 50-1 BON]
 gi|332700426|gb|AEE97367.1| iron-only hydrogenase maturation protein HydF [Mahella
           australiensis 50-1 BON]
          Length = 413

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 22/170 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  NAGKSS+ NA+  +  A+V+D+ GTT D ++  ++L     V I DTAG+ 
Sbjct: 13  MHIAIFGRRNAGKSSIINAITNQKAALVSDVAGTTTDPVSKAMELLPIGPVVIIDTAGLD 72

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSD 330
           +   + E   I+RT+  +   DL +L+ +      + ++ I      KNI  +    K+D
Sbjct: 73  DIGPLGEMR-IQRTYDVLNRTDLAVLVIDGEVGLTDFEENILRRIREKNIPVVGAVNKAD 131

Query: 331 LYSTYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFKKL 369
             + YT+E                S+ TG+G++EL   I        +KL
Sbjct: 132 -KAVYTQEQLKEWEKKLKLELVEVSAATGQGIDELKMAIVRHAPYDDEKL 180


>gi|306829343|ref|ZP_07462533.1| GTP-binding protein Era [Streptococcus mitis ATCC 6249]
 gi|322374470|ref|ZP_08048984.1| GTP-binding protein Era [Streptococcus sp. C300]
 gi|304428429|gb|EFM31519.1| GTP-binding protein Era [Streptococcus mitis ATCC 6249]
 gi|321279970|gb|EFX57009.1| GTP-binding protein Era [Streptococcus sp. C300]
          Length = 299

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L +   +  + +        S+  G  +  LI+ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRNQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|257459461|ref|ZP_05624570.1| GTP-binding protein Era [Campylobacter gracilis RM3268]
 gi|257442886|gb|EEV18020.1| GTP-binding protein Era [Campylobacter gracilis RM3268]
          Length = 309

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 22/200 (11%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           ++S I   K  E +++G+ + ++G +NAGKSSL N L  + +++V+     TR  +    
Sbjct: 8   VASRIKFYKFKENMKSGF-VTLIGRTNAGKSSLLNYLCGEKISLVSHKINATRRKINGIA 66

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFP 317
                 V  +DT G+ E+  ++ K  ++     +E  DL+L L  ++      +K ++  
Sbjct: 67  MNGTDQVIFTDTPGLHESAKLMNKLMVEVALGAIEGCDLVLFLAPVHDDTAEYEKFLNLN 126

Query: 318 KNIDFIFIGTKSD------------LYSTYTE--EYDHLISSFTGEGLEELINKIKSIL- 362
             I  I I TK D             Y  +T+  E    +S       ++++++I  IL 
Sbjct: 127 AGIKHIVILTKIDEVNDEKIVQKLLQYQKFTDKFEAIIPVSIKKKVYKKQVLDEICKILP 186

Query: 363 -SNKFKKLPFSIPSHKRHLY 381
               F        +++R +Y
Sbjct: 187 EHEYFYDPEILSATNEREIY 206


>gi|126696804|ref|YP_001091690.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9301]
 gi|126543847|gb|ABO18089.1| GTP-binding protein ERA-like protein [Prochlorococcus marinus str.
           MIT 9301]
          Length = 303

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 73/195 (37%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + +LG  N GKS+L N L  + + I + I  TTR+ L   L  +   +   DT 
Sbjct: 4   YRSGF-VTLLGRPNVGKSTLINKLIGEKITITSPIAQTTRNKLKGILTTDNGQIIFVDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGT 327
           G+ +    + +  +K     +   D+++ + + + +                 +FI    
Sbjct: 63  GVHKPHHRLGEILVKNAKSAINGVDMVIFVIDSSEEPGRGDEYILNFLISNKTEFIVALN 122

Query: 328 KSDLYSTY--------------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL +                      ++S+  GEG  EL++   + L    K      
Sbjct: 123 KWDLVNKEFRNLRLDQYRRFFGINRNFQIVSASQGEGCSELVDMALNFLPEGPKLYGEET 182

Query: 374 PSHKRHLYHLSQTVR 388
              +     LS  VR
Sbjct: 183 ICDQPLDNLLSDLVR 197


>gi|15828851|ref|NP_326211.1| GTP-binding protein Era [Mycoplasma pulmonis UAB CTIP]
 gi|21263604|sp|Q98QI1|ERA_MYCPU RecName: Full=GTPase Era
 gi|14089794|emb|CAC13553.1| GTP-BINDING PROTEIN ERA [Mycoplasma pulmonis]
          Length = 293

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 87/214 (40%), Gaps = 25/214 (11%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  N GKS+L N + + D+AIV+  P  TRD +      + Y +  +DT GI +T  
Sbjct: 7   TIIGRPNVGKSTLLNNILEYDLAIVSSKPQATRDQIMGIYSDDDYQLIFTDTPGIYKTKT 66

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKE----------------ISFPKNIDF---- 322
              +    +++  +++ DL++ L   N +                  I+    ID     
Sbjct: 67  KFGENLNAQSYESLKDIDLVIFLSPANEEIGPGDEFICEKIKNFTNKIALITKIDLENSE 126

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
             +  K++   +   +    ISS     +++LIN+IK       ++    + + K   + 
Sbjct: 127 EVLKKKAEKLKSLGFKEIFAISSKDHGSIKKLINEIKKYSYEGERQFDEDMITEKSEKFI 186

Query: 383 LSQTVR-----YLEMASLNEKDCGLDIIAENLRL 411
             +++R      LE    +     +D  +E  R 
Sbjct: 187 AKESIREACIDLLEQELPHSILVEIDSFSEEERE 220


>gi|238854658|ref|ZP_04644988.1| GTP-binding protein Era [Lactobacillus jensenii 269-3]
 gi|260664399|ref|ZP_05865251.1| GTP-binding protein Era [Lactobacillus jensenii SJ-7A-US]
 gi|282932951|ref|ZP_06338348.1| GTP-binding protein Era [Lactobacillus jensenii 208-1]
 gi|313472197|ref|ZP_07812689.1| GTP-binding protein Era [Lactobacillus jensenii 1153]
 gi|238832448|gb|EEQ24755.1| GTP-binding protein Era [Lactobacillus jensenii 269-3]
 gi|239529577|gb|EEQ68578.1| GTP-binding protein Era [Lactobacillus jensenii 1153]
 gi|260561464|gb|EEX27436.1| GTP-binding protein Era [Lactobacillus jensenii SJ-7A-US]
 gi|281302986|gb|EFA95191.1| GTP-binding protein Era [Lactobacillus jensenii 208-1]
          Length = 302

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 82/205 (40%), Gaps = 22/205 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + ++G  N GKS+L N L  + V I ++ P TTR+ ++     +       DT G
Sbjct: 8   KSGF-VALIGRPNVGKSTLMNHLIGQKVVITSNKPQTTRNKISGIFTTDNLQAVFVDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------KEISFPKNIDFIFIGTKS 329
           I +  + ++    K +   + + DL+  + E            ++          I  K 
Sbjct: 67  IHKPKNKLDDYMDKASLSSLNDVDLVFFMVEPEKVGKGDEYIADLLSKVKAPVFLIINKI 126

Query: 330 D---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           D         +  +Y +         IS+  G  +E+LI+ +   L    +       + 
Sbjct: 127 DQVHPDALLPVIESYQKLGKFAEIVPISATNGNNMEDLISTLYKYLPEGPQFYGSDEVTD 186

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCG 401
           +   + +++ +R  ++  L +++  
Sbjct: 187 RPEYFVVAELIRE-QILRLTQQEIP 210


>gi|103486700|ref|YP_616261.1| GTP-binding protein Era [Sphingopyxis alaskensis RB2256]
 gi|98976777|gb|ABF52928.1| GTP-binding protein Era [Sphingopyxis alaskensis RB2256]
          Length = 297

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L NAL  + VAIV+    TTR  L          + + DT G
Sbjct: 4   RCGF-VAVVGAPNAGKSTLVNALVGQKVAIVSPKAQTTRTRLMGVAMEGETQIVLIDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------FIFIGTK 328
           I      +++  +   +  +E A+ IL++ +  +K      + +D           I  K
Sbjct: 63  IFAPARRLDRAMVAAAWGSLEQAEAILVMVDAAAKPTGRVERVLDGIANRPEKKYLILNK 122

Query: 329 -------------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                        +DL +  T +    I++ +G+G+ EL   +  ++       P    S
Sbjct: 123 VDLTRKDKLLTLATDLNAKLTFDETFFIAASSGDGVPELKAHLAGMMPEGPWHFPEDEVS 182

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+E+
Sbjct: 183 DAPERMLAAEITREQLYRQLHEE 205


>gi|332686714|ref|YP_004456488.1| GTP-binding protein Era [Melissococcus plutonius ATCC 35311]
 gi|332370723|dbj|BAK21679.1| GTP-binding protein Era [Melissococcus plutonius ATCC 35311]
          Length = 300

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 72/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +  + VAI++D   TTR+ +      +   +   DT GI +  
Sbjct: 10  IAIIGRPNVGKSTLLNRIVGQKVAIMSDKAQTTRNKIQGIYTTQKAQLIFIDTPGIHKPK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNI--DFIFIGTKSD--- 330
             +    ++  +  +   D  L +   + K+       I   K +      +  K D   
Sbjct: 70  HRLGDFMVETAYSALREVDATLFMISADQKRGKGDDFIIERLKEMQNPVYLVINKIDKIH 129

Query: 331 ------LYSTYTEEY----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 +   Y+++        IS+  G   + L++ +   +    +  P    +     
Sbjct: 130 PDDLLGIIEDYSQQMTFKEIIPISATEGNNFDHLMDVLVEQMPVGPQYFPEDQVTDHPEY 189

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 190 FIVSELIR 197


>gi|239993744|ref|ZP_04714268.1| tRNA modification GTPase [Alteromonas macleodii ATCC 27126]
          Length = 71

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 1  MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60
          +    +TI A +T      + I+R+SGP    + E +       PR A+   F   +  +
Sbjct: 4  LTLSTDTITAQATAPGRGGVGIVRVSGPKAKAIAEALVPSAL-TPRLATYTPFVDANNSV 62

Query: 61 LDKGLLIVF 69
          +D+G+ + F
Sbjct: 63 IDQGIALFF 71


>gi|312881717|ref|ZP_07741494.1| GTP-binding protein Era [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370607|gb|EFP98082.1| GTP-binding protein Era [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 325

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 77/213 (36%), Gaps = 27/213 (12%)

Query: 202 DISSHISQGKLG----EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           DI +  S+ +      E  R G+ I I+G  N GKS+L N +  + ++I +  P TTR  
Sbjct: 11  DIDAFFSKSEEPSSEPENQRCGF-IAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHR 69

Query: 258 LTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKE 313
           +        +     DT G+  E    + +   +     + + +L+  L +        E
Sbjct: 70  IMGVDTQGDFQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDGTHWTDDDE 129

Query: 314 ISFPK----NIDFIFIGTKSDLYSTYTEEYDHLI--------------SSFTGEGLEELI 355
           +   K    N   +    K D      +   H++              S+  G+ ++ L 
Sbjct: 130 MVLTKLQKSNFPVVLCVNKVDNVPDRNQVMMHMMDMSKKMEFVDVVPISAKHGKNIDVLR 189

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             ++  L       P    + +   +  S+ VR
Sbjct: 190 EHVRKHLPKATHHFPEEYVTDRSQRFMASEIVR 222


>gi|224418108|ref|ZP_03656114.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491]
 gi|253827435|ref|ZP_04870320.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491]
 gi|313141643|ref|ZP_07803836.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491]
 gi|253510841|gb|EES89500.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491]
 gi|313130674|gb|EFR48291.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491]
          Length = 294

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 8/128 (6%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + +LG  NAGKS+  NAL  + +A+V+     TR  + + L  E   +   DT G
Sbjct: 4   RAGF-VAVLGRPNAGKSTFLNALLGERLALVSHKANATRKRMNLVLMQEEAQIVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSDL 331
           I + + ++ +  +K     +++ DL+L L  ++ K +     +   KN   + + TKSD 
Sbjct: 63  IHKQEKLLNQYMLKEAMQAMQDCDLLLFLAPVSDKIDFYEEFLQSAKNKPHLLLLTKSD- 121

Query: 332 YSTYTEEY 339
            S   EE 
Sbjct: 122 -SVIKEEL 128


>gi|308069928|ref|YP_003871533.1| GTP-binding protein [Paenibacillus polymyxa E681]
 gi|305859207|gb|ADM70995.1| GTP-binding protein, era-like (Bex protein) [Paenibacillus polymyxa
           E681]
          Length = 300

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 86/219 (39%), Gaps = 23/219 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  ++G+ + I+G  N GKS+L N +  + +AI++D P TTR+ +      E   +   D
Sbjct: 4   KHFKSGF-VAIVGRPNVGKSTLMNHVIGQKIAIMSDKPQTTRNKIHGVFTTEDTQIVFLD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           T GI +    +     +  F  +   + +L L +             E         I +
Sbjct: 63  TPGIHKRQSKLGDYMNQTAFNTLGEVEAVLFLIDAAEGLGGGDRFIAEQLKQVKTPVILV 122

Query: 326 GTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L   Y + YD      IS+  G  +  L+ +++  L    +  P  
Sbjct: 123 LNKIDRIEPEALLPLIEQYRKLYDFAEIIPISAKMGNNVNTLLEQVQKYLPEGPQYYPDD 182

Query: 373 IPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLR 410
             +     + +S+ VR  +   +  E    + ++ E+++
Sbjct: 183 QITDHPEQFVISELVREKILHMTREEVPHSIAVMIEDMK 221


>gi|317129116|ref|YP_004095398.1| GTP-binding proten HflX [Bacillus cellulosilyticus DSM 2522]
 gi|315474064|gb|ADU30667.1| GTP-binding proten HflX [Bacillus cellulosilyticus DSM 2522]
          Length = 420

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 112/282 (39%), Gaps = 19/282 (6%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            + ++  +        G L          L+ +   I        + +      +  + D
Sbjct: 112 RARSKEGKLQVELAQLGYLLPRLRGQGAMLSRLGGGIGTRGPGETQLETDQRHIRNRMTD 171

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I      I SH  + +        ++I ++G++NAGKS+L + L++ D+  V D    T 
Sbjct: 172 IRMQLEQIVSHRERYRARRKKNQAFQISLVGYTNAGKSTLLHRLSEADI-YVEDQLFATL 230

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-- 312
           D  T  + L  G  V ++DT G  +          + T  EV+ ADLIL + +  +    
Sbjct: 231 DPTTKKIKLPSGMEVLLTDTVGFIQQLPTTLIAAFRSTLEEVKEADLILHVVDAANPDYP 290

Query: 313 ----------EISFPKNIDFIFIGTKSDL----YSTYTEEYDHLISSFTGEGLEELINKI 358
                     E    + I  + +  K DL    + +YT+    LISS     L++L  KI
Sbjct: 291 NHEKTVYKLLEELEAEKIPVLTVYNKRDLLHGDFFSYTKSASILISSKEKADLDKLQEKI 350

Query: 359 KSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLEMASLNEKD 399
           +S++   F    F + +++ + L+ L +    +E     + +
Sbjct: 351 ESVMEEIFSPYIFHVDANEGKWLHRLQRETIQVEQYFDEQSE 392


>gi|296876081|ref|ZP_06900135.1| GTP-binding protein Era [Streptococcus parasanguinis ATCC 15912]
 gi|296432792|gb|EFH18585.1| GTP-binding protein Era [Streptococcus parasanguinis ATCC 15912]
          Length = 299

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 68/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +          +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTNKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKS---- 329
             +    ++  +  +   D +L +   +  +        E      +  I +  K     
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 330 ---------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +  LI+ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRSQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|121535380|ref|ZP_01667192.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1]
 gi|121306072|gb|EAX47002.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1]
          Length = 408

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 20/171 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  NAGKSSL NAL  +++A+V+D+PGTT D +   +++     V I DTAGI 
Sbjct: 10  MHIAIFGRRNAGKSSLINALTNQNIALVSDVPGTTTDPVYKAMEILPIGPVVIIDTAGID 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFP----KNIDFIFIGTKSD 330
           +  ++     ++RT   +   D  L++ +    ++  +E        + I  I +  K D
Sbjct: 70  DEGELGALR-VERTLQVLNKTDQALVVIDQAAGVSEWEERLVAELKKRQIPVIGVVNKID 128

Query: 331 LYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILSNKFKKLPF 371
                  E              +S+ T +G+EEL  ++     + ++  P 
Sbjct: 129 TGQPAAAETLDWAKRLAIPMVAVSAKTRQGVEELKRQMIKHAPDNWEGPPI 179


>gi|282600806|ref|ZP_05979765.2| GTP-binding protein Era [Subdoligranulum variabile DSM 15176]
 gi|282570996|gb|EFB76531.1| GTP-binding protein Era [Subdoligranulum variabile DSM 15176]
          Length = 296

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N L  + VAIVT  P TTR  +T  +        + DT GI +  
Sbjct: 7   VALVGRPNVGKSSLTNYLVGEKVAIVTKKPQTTRSRITGVITKGPVQYVLMDTPGIHKAH 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDLYST 334
           + ++    +     +++ D+ ++L E   +   S         K    I +  K DL  +
Sbjct: 67  NKLDARMTQTAAASLKDVDVTMMLFEPEGELTDSELTMIKALQKGGPAIAVINKVDLLDS 126

Query: 335 YTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +                +    +S+  G G EEL   +K   +           +     
Sbjct: 127 FAALEQRKRQVADFRCFDAVVTVSAKDGTGCEELFTLLKPYGNEGPHYFDDDAFTDMPEK 186

Query: 381 YHLSQTVR 388
             +++ VR
Sbjct: 187 ELVAELVR 194


>gi|313679135|ref|YP_004056874.1| GTP-binding protein era [Oceanithermus profundus DSM 14977]
 gi|313151850|gb|ADR35701.1| GTP-binding protein Era [Oceanithermus profundus DSM 14977]
          Length = 300

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 12/138 (8%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  E   +G+ + ILG  N GKS+L N +    VA ++  P TTR  +          + 
Sbjct: 3   EATERTHSGF-VAILGKPNVGKSTLLNQMLGVKVAPISPKPQTTRKSVRGIYTEGNRQIV 61

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNI 320
             DT G+ +  D +     ++    + + D++L L ++           ++         
Sbjct: 62  FVDTPGLHKPADALGDYINRQVTEALSDVDVVLWLVDLRHPPTPEDELVARTLEPLVGKK 121

Query: 321 DFIFIGTKSDLYSTYTEE 338
             + +G K+D  + Y +E
Sbjct: 122 PVLLVGNKAD-AAKYPDE 138


>gi|309781188|ref|ZP_07675925.1| GTP-binding protein Era [Ralstonia sp. 5_7_47FAA]
 gi|308920009|gb|EFP65669.1| GTP-binding protein Era [Ralstonia sp. 5_7_47FAA]
          Length = 312

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +  + E  R G  + I+G  N GKS+L NAL  + V+I +    TTR  +T     +  
Sbjct: 11  PESGVPEGFRCGM-VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDA 69

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNI 320
                DT G +          + R     + + D +L + E       + K     P+  
Sbjct: 70  QFVFVDTPGFQTRHATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDEKVLSLLPRET 129

Query: 321 DFIFIGTKSDLYSTYTE 337
             I I  K D    YT 
Sbjct: 130 PVILIVNKVDRLDAYTR 146


>gi|94269340|ref|ZP_01291433.1| probable tRNA modification GTPase (TrmE) [delta proteobacterium
           MLMS-1]
 gi|93451252|gb|EAT02147.1| probable tRNA modification GTPase (TrmE) [delta proteobacterium
           MLMS-1]
          Length = 122

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLE 391
             + ++    IS+ TG+GLEEL   I + L+    + P  +   + RH   L   +    
Sbjct: 13  QRFADQPLVGISARTGQGLEELTEAIFTALTGGRHRDPEHACVPNARHEAALQAALVAAR 72

Query: 392 MASLNEKDCG-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +   +  G  +++A  L+ A  +LG+I G    E+LLD IFS+FCIGK
Sbjct: 73  RTTTTLQSGGAPELLAVELQGALAALGEIVGETSGEELLDAIFSRFCIGK 122


>gi|17545783|ref|NP_519185.1| GTP-binding protein Era [Ralstonia solanacearum GMI1000]
 gi|21263578|sp|Q8Y0I0|ERA_RALSO RecName: Full=GTPase Era
 gi|17428077|emb|CAD14766.1| probable gtp-binding protein era homolog [Ralstonia solanacearum
           GMI1000]
          Length = 298

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 8/131 (6%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G  + I+G  N GKS+L NAL  + V+I +    TTR  +T     +       D
Sbjct: 3   EGFRCGM-VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVD 61

Query: 274 TAGIRETDDIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIG 326
           T G +          + R     + + D +L + E       ++K     P+    I I 
Sbjct: 62  TPGFQTRHATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVLSLLPRETPVILIV 121

Query: 327 TKSDLYSTYTE 337
            K D    YT 
Sbjct: 122 NKVDRLDAYTR 132


>gi|317418209|emb|CBM95518.1| GTP-binding protein-like protein [Helicobacter cetorum]
          Length = 172

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 20/161 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LAK+ +AI +D  GTTRD+    + L    V++ DT G+ + +
Sbjct: 10  IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINRRKIFLNESEVELLDTGGM-DKN 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFIGTKSDLYS 333
            ++ KE         + +DLIL + +   I    +I   +     N +   +  K D   
Sbjct: 69  VVLSKEIKTFNLKAAQMSDLILYVVDGKSIPDDDDIKLFREIFKINPNCFLVINKIDNDR 128

Query: 334 TYTEEYD-----------HLISSFTGEGLEELINKIKSILS 363
                Y              IS     G+  LIN I + L+
Sbjct: 129 EKERAYAFASFGVSSHRSFNISVSHNRGINTLINAILNELN 169


>gi|187928024|ref|YP_001898511.1| GTP-binding protein Era [Ralstonia pickettii 12J]
 gi|241662606|ref|YP_002980966.1| GTP-binding protein Era [Ralstonia pickettii 12D]
 gi|187724914|gb|ACD26079.1| GTP-binding protein Era [Ralstonia pickettii 12J]
 gi|240864633|gb|ACS62294.1| GTP-binding protein Era [Ralstonia pickettii 12D]
          Length = 312

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +  + E  R G  + I+G  N GKS+L NAL  + V+I +    TTR  +T     +  
Sbjct: 11  PESGVPEGFRCGM-VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDA 69

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNI 320
                DT G +          + R     + + D +L + E       + K     P+  
Sbjct: 70  QFVFVDTPGFQTRHATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDEKVLSLLPRET 129

Query: 321 DFIFIGTKSDLYSTYTE 337
             I I  K D    YT 
Sbjct: 130 PVILIVNKVDRLDAYTR 146


>gi|74318103|ref|YP_315843.1| GTPase [Thiobacillus denitrificans ATCC 25259]
 gi|74057598|gb|AAZ98038.1| GTPase [Thiobacillus denitrificans ATCC 25259]
          Length = 297

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 71/194 (36%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R G  + I+G  N GKS+L N L  + V+I +    TTR  +      +       DT 
Sbjct: 7   YRCGL-VAIVGRPNVGKSTLLNRLVGQKVSITSRKAQTTRHRVMGIHTTDRAQFVFVDTP 65

Query: 276 GIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTK 328
           G +      + +   KR    + + D++++L E       + +     PK+   + +  K
Sbjct: 66  GFQTRHTSTMNRAMNKRVRETLSDTDVVMMLVEAGRLTREDRQVMELLPKDRPLLLVVNK 125

Query: 329 SD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            D              + + +       +S+  G  L+EL+  ++  L            
Sbjct: 126 VDQAKDRAALMAYLQQVAAAHAFTEIVPVSAKQGSNLDELLKTLEKHLPENPPLFGEDHV 185

Query: 375 SHKRHLYHLSQTVR 388
           + +      ++ +R
Sbjct: 186 TDQTERQLAAELIR 199


>gi|299067032|emb|CBJ38227.1| 30S ribosomal subunit_binding GTPase [Ralstonia solanacearum CMR15]
          Length = 315

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 8/131 (6%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G  + I+G  N GKS+L NAL  + V+I +    TTR  +T     +       D
Sbjct: 20  EGFRCGM-VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVD 78

Query: 274 TAGIRETDDIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIG 326
           T G +          + R     + + D +L + E       ++K     P+    I I 
Sbjct: 79  TPGFQTRHATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVLSLLPRETPVILIV 138

Query: 327 TKSDLYSTYTE 337
            K D    YT 
Sbjct: 139 NKVDRLDAYTR 149


>gi|317154877|ref|YP_004122925.1| GTP-binding protein Era [Desulfovibrio aespoeensis Aspo-2]
 gi|316945128|gb|ADU64179.1| GTP-binding protein Era [Desulfovibrio aespoeensis Aspo-2]
          Length = 302

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 79/205 (38%), Gaps = 28/205 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L  + VAIV+  P TTR+ ++  L  +   V   DT GI +  
Sbjct: 7   VALIGPPNAGKSTLMNQLLGQKVAIVSPRPQTTRNRISGILSTDEAQVVFLDTPGIHQLR 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEIS------FPKNIDFIFIGT 327
             + +  ++  +  +  AD++++L + +          KEI              +    
Sbjct: 67  GKMNRFLLEAAWSALAGADVVVVLLDASLYAAKPYMMDKEIKPLVKPVAETGRPVLVAVN 126

Query: 328 KSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D                  +       +S+  G+G + L+ +I   +       P   
Sbjct: 127 KIDRIKDKAGMLPVLARAAELWPAAEFIPVSALRGQGTDVLLKRILDFIPEGPAMFPEDQ 186

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            S     +  S+ +R     +L ++
Sbjct: 187 ISTAPVRFMASEIIREKLFYTLRQE 211


>gi|307103139|gb|EFN51402.1| hypothetical protein CHLNCDRAFT_37436 [Chlorella variabilis]
          Length = 540

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 75/198 (37%), Gaps = 32/198 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ I+G  N GKS+LFN +  + VAIV D PG TRD L        +   + DT G+   
Sbjct: 103 KVAIVGRPNVGKSALFNRIVGRQVAIVYDYPGVTRDRLYTRAFWGDHEFLLVDTGGLMSD 162

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE---INSKKEIS-----FPKNIDFIFIGTKSDLY 332
            + + KE   R FL   N      L +    ++ +EI         N   I    K +  
Sbjct: 163 AEKLPKEQQARPFLPAANPACRAFLPQTGGTSADEEIQAWLRRMHPNKPVILAVNKCENA 222

Query: 333 STYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           +    +              S+ +G G  EL+ ++ + L                    L
Sbjct: 223 AKADLQAAEFWGSGLEPIAVSAISGSGTGELMERLAAALPPPPT---------------L 267

Query: 384 SQTVRYLEMASLNEKDCG 401
           ++    LE+A +   + G
Sbjct: 268 AEAADRLEVAIIGRPNVG 285



 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L   +++ +          +  ++ I+G  N GKSSL NAL  ++ +IV+ + GTTRD 
Sbjct: 252 ELMERLAAALPPPPTLAEAADRLEVAIIGRPNVGKSSLLNALVGEERSIVSSMAGTTRDA 311

Query: 258 LTIDLDL-EGYLVKISDTAGIRETDDI 283
           +  DL L +G   K+ DTAG+R+   I
Sbjct: 312 IDTDLVLTDGSKFKLVDTAGVRKRTAI 338


>gi|332522204|ref|ZP_08398456.1| ribosome biogenesis GTPase Era [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313468|gb|EGJ26453.1| ribosome biogenesis GTPase Era [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 299

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTEQEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK----- 328
             +    ++  +  +   D +L +   + K+        E      I  I +  K     
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDEMIMERLKNAKIPVILVINKIDKVH 127

Query: 329 --------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLEQIDDFRSQMDFKEIVPISALEGNNIPTLMSLLTDNLEEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|254507481|ref|ZP_05119615.1| GTP-binding protein Era [Vibrio parahaemolyticus 16]
 gi|219549551|gb|EED26542.1| GTP-binding protein Era [Vibrio parahaemolyticus 16]
          Length = 325

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 75/213 (35%), Gaps = 27/213 (12%)

Query: 202 DISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           DI +  S         E    G+ + I+G  N GKS+L N +  + ++I +  P TTR  
Sbjct: 11  DIDAFFSSNNKPASTPENQHCGF-VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHR 69

Query: 258 LTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKE 313
           +        Y     DT G+  E    + +   +     + + +L+  L +     +  E
Sbjct: 70  IMGVDTEGDYQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDGTHWTADDE 129

Query: 314 ISFPK----NIDFIFIGTKSDLYSTYTEEYDHLI--------------SSFTGEGLEELI 355
           +   K    N   +    K D      +   H++              S+  G+ ++ L 
Sbjct: 130 MVLTKLQKSNFPVVLCVNKVDNVQDRNDVMLHMMEMSKKMEFVDVVPISAKHGKNIDVLR 189

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             ++  L       P    + +   +  S+ VR
Sbjct: 190 KHVREHLPKATHHFPEEYVTDRSQRFMASEIVR 222


>gi|319745497|gb|EFV97801.1| GTP-binding protein Era [Streptococcus agalactiae ATCC 13813]
          Length = 314

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 80/211 (37%), Gaps = 22/211 (10%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +   I++ ++  +     ++G+ + ILG  N GKS+  N +  + +AI++D   TTR+ +
Sbjct: 1   MMRSITNKLNGERKEMTFKSGF-VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKI 59

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------ 312
                 E   +   DT GI +    +    ++  +  +   + +L +   + K+      
Sbjct: 60  MGIYTTETEQIVFIDTPGIHKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDM 119

Query: 313 --EISFPKNIDFIFIGTK-------------SDLYSTYTEEYDHLISSFTGEGLEELINK 357
             E      I  I +  K              D  S    +    IS+  G  +  LI  
Sbjct: 120 IIERLKAAKIPVILVINKIDKVHPDQLLEQIDDFRSQMDFKEVVPISALQGNNVPTLIKL 179

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           +   L   F+  P    +     + +S+ VR
Sbjct: 180 LTDNLEEGFQYFPEDQITDHPERFLVSEMVR 210


>gi|91775217|ref|YP_544973.1| GTP-binding protein Era [Methylobacillus flagellatus KT]
 gi|91775361|ref|YP_545117.1| GTP-binding protein Era [Methylobacillus flagellatus KT]
 gi|91709204|gb|ABE49132.1| GTP-binding protein Era [Methylobacillus flagellatus KT]
 gi|91709348|gb|ABE49276.1| GTP-binding protein Era [Methylobacillus flagellatus KT]
          Length = 296

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 68/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +    ++I +    TTR  L      E       DT G ++  
Sbjct: 12  VAIVGRPNVGKSTLLNHILGLKLSITSRKAQTTRHRLLGIHTTEDTQFLFVDTPGFQQKH 71

Query: 282 DIVEKEGIKRTF-LEVENADLILLLK------EINSKKEISFPKNIDFIFIGTKSD---- 330
                  + RT    +   D++L +       + + K     PKN     +  K+D    
Sbjct: 72  INALNRNLNRTVTQVLSEVDVVLFVIEPMHLGDADRKVLQLLPKNQPVFLVVNKADLMGD 131

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 L   +  E+       +S+     L+EL+  ++  L  +         + +   
Sbjct: 132 KGNLLPLIQDFDLEFPFTGIIPVSAKKNLYLDELLAAVREHLPEQPAIYGEDELTDRNER 191

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 192 FLAAEMLR 199


>gi|94311353|ref|YP_584563.1| GTP-binding protein Era [Cupriavidus metallidurans CH34]
 gi|93355205|gb|ABF09294.1| membrane-associated, 16S rRNA-binding GTPase [Cupriavidus
           metallidurans CH34]
          Length = 312

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + ++I +    TTR  +      +      +DT G +   
Sbjct: 25  VAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRIVGIQTTDDTQYVFADTPGFQTRH 84

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D++L + E       + K     PKN+  + +  K D    
Sbjct: 85  ASALNRSLNRAVTSTLSSVDIVLFVVEAGYFGPDDEKVLSLLPKNVPVLLVCNKLDRIGE 144

Query: 335 YTEEY----------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
              E                    +S+ T + ++ L+  I+  L            + + 
Sbjct: 145 GRSEVMMPFLEQMGQRFPFREVVPMSAKTRDHIQRLLAIIRPYLPEGEPMYDVDAMTDRS 204

Query: 379 HLYHLSQTVR 388
             +  S+ +R
Sbjct: 205 ERFLASEIIR 214


>gi|228478255|ref|ZP_04062863.1| GTP-binding protein Era [Streptococcus salivarius SK126]
 gi|228249934|gb|EEK09204.1| GTP-binding protein Era [Streptococcus salivarius SK126]
          Length = 299

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAIIGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKS---- 329
             +    ++  +  +   D +L +   +  +       I   K   +  I +  K     
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDNMIIERLKQAKVPVILVINKIDKVH 127

Query: 330 ---------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  +    +    IS+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLEQIEDFRTQMDFKEIIPISALQGNNVSHLVDVLSDNLEEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|315223060|ref|ZP_07864939.1| GTP-binding protein Era [Streptococcus anginosus F0211]
 gi|315188010|gb|EFU21746.1| GTP-binding protein Era [Streptococcus anginosus F0211]
          Length = 299

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDQEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDL-- 331
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVSADENRGKGDDMIMERLKAAKVPVILVVNKIDKVH 127

Query: 332 -------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     Y ++ D      IS+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PNQLLSQIDDYRKQMDFKEVVPISALQGNNVSHLVDILSENLEEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|329770520|ref|ZP_08261898.1| GTP-binding protein Era [Gemella sanguinis M325]
 gi|328836269|gb|EGF85938.1| GTP-binding protein Era [Gemella sanguinis M325]
          Length = 302

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 91/213 (42%), Gaps = 23/213 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E I+ G+ + I+G  NAGKS+L N + K+ +AI++D P TTR+++          +   D
Sbjct: 4   EQIKTGF-VTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRNIINGVYTDSDSQIVFID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFI 325
           T GI +    +    +K     ++ ++++ L+   + K          I     +    +
Sbjct: 63  TPGIHKPKHKLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFLL 122

Query: 326 GTKSDLYST---------YTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL +          Y E YD      IS+     ++ L++  K  L   FK  P  
Sbjct: 123 INKIDLITPEKLLEIITFYNELYDFVEIVPISALKSINVDNLLSTTKKYLQPSFKMYPDD 182

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
           + +     + +S+ +R  ++  L +++    I 
Sbjct: 183 VITDSPEYFVISEFIRE-KVLQLTDQEIPHSIA 214


>gi|322391812|ref|ZP_08065277.1| GTP-binding protein Era [Streptococcus peroris ATCC 700780]
 gi|321145292|gb|EFX40688.1| GTP-binding protein Era [Streptococcus peroris ATCC 700780]
          Length = 299

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIMERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L +   +  + +        S+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRNQMDFKEIVPISALQGNNVSHLVDILSDNLEEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|109123865|ref|XP_001113573.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
           [Macaca mulatta]
          Length = 158

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 11/129 (8%)

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELINKIKSILSNKFKKLPFS- 372
              + +  KSDL S         +      S  TGEGL+ L+  ++  L+          
Sbjct: 33  QRLLLVLNKSDLLSPEGPGPRPDLPPHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTGS 92

Query: 373 -IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
            + +  RH +HL   +  L           L + AE LR+A   L ++TG    E++LDI
Sbjct: 93  PLLTRARHQHHLQGCLDALSHYK---PSKDLALAAEALRVARGHLTRLTGGGGTEEILDI 149

Query: 432 IFSKFCIGK 440
           IF  FC+GK
Sbjct: 150 IFRDFCVGK 158


>gi|190571107|ref|YP_001975465.1| GTP-binding protein Era [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019630|ref|ZP_03335436.1| GTP-binding protein Era [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357379|emb|CAQ54813.1| GTP-binding protein Era [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995052|gb|EEB55694.1| GTP-binding protein Era [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 294

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 23/165 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G  NAGKS+L N++  K +AIVT    TTR  +          +  +D+ G+   +
Sbjct: 9   VTIAGLPNAGKSTLINSIVGKKIAIVTPKVQTTRTQVRGVAICNNAQIVFTDSPGVFSAE 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFPK---------NIDFIFIGTKSDL 331
             +EK  +K  +  V+++D+ LLL ++N+  K I   K             I +  K+DL
Sbjct: 69  TNLEKALVKSAWGAVKDSDITLLLVDVNNYLKNIERIKTIFARLERTKGRCILVINKTDL 128

Query: 332 YST-------------YTEEYDHLISSFTGEGLEELINKIKSILS 363
                           Y  E    IS+   +GL +L + +  I  
Sbjct: 129 VKKSELKMAHEHLNLLYKFEKIFTISALKNDGLSDLTSYLSEIAP 173


>gi|325694805|gb|EGD36710.1| GTP-binding protein Era [Streptococcus sanguinis SK150]
          Length = 299

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L +   +       +    IS+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRQQMDFKEIVPISALQGNNVSHLVDILSENLEEGFQYFPEDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|270292907|ref|ZP_06199118.1| GTP-binding protein Era [Streptococcus sp. M143]
 gi|270278886|gb|EFA24732.1| GTP-binding protein Era [Streptococcus sp. M143]
          Length = 299

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L +   +  + +        S+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLEEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|331002901|ref|ZP_08326414.1| GTP-binding protein Era [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330413194|gb|EGG92568.1| GTP-binding protein Era [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 298

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 84/205 (40%), Gaps = 23/205 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + ++G  N GKS+L N L  + +AI ++ P TTR+ +      E   +   DT 
Sbjct: 1   MKSGF-VALIGRPNVGKSTLMNTLIGQKIAITSNKPQTTRNRIQTVFTDERGQIVFLDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGT 327
           GI +  + + +  +K +   + + D++L L E N+          EI     +  I    
Sbjct: 60  GIHKAKNKLGEYMVKVSTRTLRDVDMVLWLIEPNTFIGEGDEHIFEILSNLEVPVILAIN 119

Query: 328 KSD----------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D          + + Y+ +        +S+  G   ++L+  I   LS          
Sbjct: 120 KMDSLKQKEDMLAVIAKYSSKMKFAEVVPVSALKGTNTDKLLEIIFKYLSEGPMYYDEDT 179

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            + +      ++ +R   +  L E+
Sbjct: 180 VTDQPIKQIAAELIREKALRFLQEE 204


>gi|298369787|ref|ZP_06981103.1| GTP-binding protein Era [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281247|gb|EFI22736.1| GTP-binding protein Era [Neisseria sp. oral taxon 014 str. F0314]
          Length = 308

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 77/210 (36%), Gaps = 24/210 (11%)

Query: 202 DISSHIS-QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           DI + ++ +       R G+ I I+G  N GKS+L N L  + ++I +    TTR+ +T 
Sbjct: 2   DIETFLNNESGRAAGYRCGF-IAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTG 60

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLK------EINSKKE 313
               +       DT G +        + + +     +   D ++ +       E +    
Sbjct: 61  IYTDDTAQFVFVDTPGFQTNHRNALNDRLNQNVTEALSGVDAVVFVVEAMRFTEADRTVI 120

Query: 314 ISFPKNIDFIFIGTKSD-----------LYSTYTEEYDH----LISSFTGEGLEELINKI 358
              PK+   I +  K D                  E++      +S+  G G+  L+ ++
Sbjct: 121 KQLPKHTPVILVVNKIDKGKADKYRLEAFIREVGAEFEFAGHEAVSAKHGLGIARLLERL 180

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           K  L       P  + + K   +   + VR
Sbjct: 181 KPYLPESVPMYPEDMVTDKSGRFLAMEIVR 210


>gi|262282704|ref|ZP_06060472.1| GTP-binding protein [Streptococcus sp. 2_1_36FAA]
 gi|262261995|gb|EEY80693.1| GTP-binding protein [Streptococcus sp. 2_1_36FAA]
          Length = 299

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L +   +       +    IS+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRQQMDFKEIVPISALQGNNVSHLVDILSENLEEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|150026004|ref|YP_001296830.1| GTP-binding protein Era [Flavobacterium psychrophilum JIP02/86]
 gi|149772545|emb|CAL44028.1| GTP-binding protein Era [Flavobacterium psychrophilum JIP02/86]
          Length = 293

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 21/208 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +  
Sbjct: 8   VNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQMILSDTPGIIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLYST 334
             +++  +       E+AD+++ + EI     K E  F K     I  + +  K D  + 
Sbjct: 68  YEMQESMMNFVKSAFEDADVLVYMVEIGEQDLKDEAFFNKIINAKIPVLLLLNKIDTSNQ 127

Query: 335 YTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
              E                 IS+     + E+ ++I  +L       P    + K   +
Sbjct: 128 AQLEAQVAFWTAKVPNAEIFPISALQNFNVPEVFDRIIKLLPESPAYYPKDQLTDKPERF 187

Query: 382 HLSQTVRYLEMAS-LNEKDCGLDIIAEN 408
            +++T+R   +     E    ++I+ E 
Sbjct: 188 FVNETIREKILIHYSKEIPYAVEIVTEE 215


>gi|124008575|ref|ZP_01693267.1| GTP-binding protein Era [Microscilla marina ATCC 23134]
 gi|123985949|gb|EAY25806.1| GTP-binding protein Era [Microscilla marina ATCC 23134]
          Length = 302

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 19/186 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + ++I+T    TTR  +   ++ + + +  SDT GI +  
Sbjct: 19  VSIIGKPNVGKSTLMNQVIGEKLSIITSKAQTTRHRIMGVINGDDFQIVYSDTPGIIKPK 78

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTY 335
             + K  ++     +++AD+IL + +I      N   E         I +  K DL    
Sbjct: 79  YELHKSMMRFVNTSLDDADVILFVTDIFEKHDENDVIEKLKISEAPVILLVNKIDLAKDN 138

Query: 336 TEE-------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
             E                 IS+     +++L   I   L       P    + K   + 
Sbjct: 139 QVEEKITYWKELIQPSEIIPISALNNINIDKLFESILKALPKHPPYFPKDTFTDKPERFF 198

Query: 383 LSQTVR 388
            ++ +R
Sbjct: 199 AAEMIR 204


>gi|109899453|ref|YP_662708.1| GTP-binding protein Era [Pseudoalteromonas atlantica T6c]
 gi|109701734|gb|ABG41654.1| GTP-binding protein Era [Pseudoalteromonas atlantica T6c]
          Length = 300

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L NAL  + V+I +  P TTR  +      E       DT G+  E 
Sbjct: 10  IAIVGRPNVGKSTLLNALLGQKVSITSRKPQTTRHRIMGIDTHENRQAIYVDTPGLHIEE 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     + +  L+L + E    N   ++   K    N+    I  KSD   
Sbjct: 70  KRAINRFMNRAASSSISDVGLVLFVVEGTKWNEDDQMVLTKIMQSNVPCWLIVNKSDNVK 129

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L   +  +    IS+  G+ + EL + +   L       P    + +  
Sbjct: 130 DKEILLPHLKWLGEQHAFDKIMPISARNGKNVNELRDMVNETLPESEFYFPDDYITDRSS 189

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 190 RFMAAEIIR 198


>gi|167037414|ref|YP_001664992.1| small GTP-binding protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115827|ref|YP_004185986.1| GTP-binding proten HflX [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856248|gb|ABY94656.1| small GTP-binding protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928918|gb|ADV79603.1| GTP-binding proten HflX [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 413

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 98/258 (37%), Gaps = 18/258 (6%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            +++ E   ++ +  +   L  L G    +L+ +   I        + +      K  + 
Sbjct: 115 RAKSREGMLQVELAQLKYRLPRLVG-LGGQLSRLGGGIGTRGPGETKLETDRRHIKNRIK 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I     +I  H S  +          I I+G++NAGKS+L NAL   +V  V D    T
Sbjct: 174 AIEKKLEEIERHRSLQRERRKKNRIPVIAIVGYTNAGKSTLLNALTNAEV-YVEDKLFAT 232

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L  G  V + DT G          E  K T  E + ADL+L + ++ S   
Sbjct: 233 LDPTARRLVLPSGREVILIDTVGFIRKLPHDLVEAFKSTLEEAKYADLLLHVIDVTSPDM 292

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTE--EYDHLISSFTGEGLEELINKIK 359
               K            N   I +  K DL     +  E +  IS+    GL++L+  I+
Sbjct: 293 EEKIKVVEKVLSDLDVINTPRINVFNKIDLLDVVPKGNEKEIYISAKNKIGLDKLLQAIE 352

Query: 360 SILSNKFKKLPFSIPSHK 377
             +    + + F +P  K
Sbjct: 353 KEIFKDVEIVNFLLPYDK 370


>gi|325662531|ref|ZP_08151134.1| hypothetical protein HMPREF0490_01874 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471227|gb|EGC74452.1| hypothetical protein HMPREF0490_01874 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 405

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 22/176 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSSL NAL  +++AIV+DI GTT D +   ++L     V + DT G
Sbjct: 10  ERLHIGIFGKRNAGKSSLINALTGQNLAIVSDIKGTTTDPVLKSMELLPLGPVVLIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTK 328
           + +   + +   +++T+  +   D+ +L+ +     +K++++       K I ++    K
Sbjct: 70  LDDHGPLGDLR-VQKTYQMLNKTDIAILVVDGTIGMTKEDLALLEQIQKKQIPYVIAFNK 128

Query: 329 SDL------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            DL              T        IS+ +G  +  L + + +I  ++  KLP  
Sbjct: 129 CDLCPANESQMPDTTTDTSKNGSAISISAASGFQISALKDLLGAIQPSEETKLPIV 184


>gi|307709149|ref|ZP_07645608.1| GTP-binding protein Era [Streptococcus mitis SK564]
 gi|307620095|gb|EFN99212.1| GTP-binding protein Era [Streptococcus mitis SK564]
          Length = 299

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L S   +  + +        S+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 188 FLVSEMVR 195


>gi|302345899|ref|YP_003814252.1| GTP-binding protein Era [Prevotella melaninogenica ATCC 25845]
 gi|302149370|gb|ADK95632.1| GTP-binding protein Era [Prevotella melaninogenica ATCC 25845]
          Length = 293

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ E   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTEDTQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKN-----IDFIFIGTKSDLYST 334
             +++  ++ +   + +AD++L + ++  + +K + F +      I  I +  K D    
Sbjct: 67  YKMQEMMLQFSESALADADILLYVTDVVEDPEKNMDFLEKVSKMSIPVILLINKIDESDQ 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                                IS+    G++ L+ ++  +L  
Sbjct: 127 KTLGNLVTKWHGLLPNAEILPISAKNKFGVDILLKRVHELLPE 169


>gi|242091397|ref|XP_002441531.1| hypothetical protein SORBIDRAFT_09g028770 [Sorghum bicolor]
 gi|241946816|gb|EES19961.1| hypothetical protein SORBIDRAFT_09g028770 [Sorghum bicolor]
          Length = 459

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 32/215 (14%)

Query: 205 SHISQGKLGEI-------IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           + + + +  E+        R+GY + +LG  N GKS+L N +  + ++IVTD P TTR  
Sbjct: 100 ALLDEYESEELGTSLCANHRSGY-VAVLGKPNVGKSTLINQMVGQKLSIVTDKPQTTRHR 158

Query: 258 LTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEI-NSKKEIS 315
           +        Y + + DT G+ + +   ++   +K     + +AD +L++ +   + ++I 
Sbjct: 159 ILGICSEPEYQIILYDTPGVIKKEMHKLDSMMMKNVRSAIGSADCVLVVADACKAPEKID 218

Query: 316 FPKNI---------DFIFIGTKSDL------------YSTYTEEYDHLISSFT-GEGLEE 353
                           + +  K DL            Y  +T   D +  S   G G+++
Sbjct: 219 EMLEEGVGNKDIALPVLLVLNKKDLIKPGEIAKKLEWYQKFTNVDDVIPISAKFGNGVDD 278

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           +   I S L       P  I S     + + + VR
Sbjct: 279 IKEWILSKLPLGPAYYPKDIASEHPERFFVGEIVR 313


>gi|317131054|ref|YP_004090368.1| small GTP-binding protein [Ethanoligenens harbinense YUAN-3]
 gi|315469033|gb|ADU25637.1| small GTP-binding protein [Ethanoligenens harbinense YUAN-3]
          Length = 414

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 20/176 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           I N   I   G  NAGKSSL NA+A + VA+ +D+PGTT D +   +++     V ++DT
Sbjct: 6   IANRTHIAFFGRRNAGKSSLLNAIAGQPVAVTSDVPGTTTDPVHKTMEILPLGPVLLTDT 65

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIG 326
           AG+ +T ++     +++ + E+   DL +L+ +          +       + + F+ + 
Sbjct: 66  AGLDDTGELGGLR-VEKAYEELRRTDLAVLVADAADGVGNFETAFIGELRKRRVPFVVVL 124

Query: 327 TKSDLYSTYTEEYD----------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            K D ++  T+E D            +S+ TGEG+  L   +   +    ++L  +
Sbjct: 125 NKCDTHAVSTDELDALKAAAAAPTAAVSAKTGEGVPALRELLARTVLPDTEELGLT 180


>gi|160940458|ref|ZP_02087803.1| hypothetical protein CLOBOL_05348 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437038|gb|EDP14805.1| hypothetical protein CLOBOL_05348 [Clostridium bolteae ATCC
           BAA-613]
          Length = 411

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 18/161 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           +   I   G  NAGKSS+ NA+  +D+A+V+D+ GTT D +   ++L     V + DT G
Sbjct: 10  DRIHIGFFGRRNAGKSSVLNAVTGQDLAVVSDVKGTTTDPVYKAMELLPLGPVMMIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPKN-----IDFIFIGTK 328
           I +   +     +++++  +   D+ +L+ +     + ++ +  K      I  + +  K
Sbjct: 70  IDDEGQLGSLR-VRKSYQVLNKTDVAVLVMDACHGPAPEDYTLLKKIGEKQIPCVAVCNK 128

Query: 329 SDLYSTYTEEYDHLI--------SSFTGEGLEELINKIKSI 361
           +D+        + +         S+ TG+G+  L   + ++
Sbjct: 129 ADVVGAAGGRPEGIPESVPVLSVSAHTGQGITALKECLANL 169


>gi|323700011|ref|ZP_08111923.1| GTP-binding protein Era [Desulfovibrio sp. ND132]
 gi|323459943|gb|EGB15808.1| GTP-binding protein Era [Desulfovibrio desulfuricans ND132]
          Length = 302

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 81/205 (39%), Gaps = 28/205 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  NAGKS+L N    + VAIV+  P TTR+ ++  L  +   +   DT G+    
Sbjct: 7   IALIGPPNAGKSTLMNTYIGQKVAIVSPKPQTTRNRISGILTTDDAQLVFLDTPGVHRLR 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----------NIDFIFIGT 327
             + +  ++  +  + ++D +++L +     +K ++   +               +    
Sbjct: 67  GKMNRFLLESAWNALASSDAVVVLVDAALYCAKPQLLDKEIAPLVKPVGEAGRPVLVAVN 126

Query: 328 KSD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D              L   + E     +S+   +G +EL+ +I +      +  P   
Sbjct: 127 KIDRIKEKDQLLPFMARLAELWPEAEFVPVSALKAKGTDELLERILAHTPEGPQMFPEDQ 186

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            S     +  S+ +R     SL ++
Sbjct: 187 ISTVPLRFMASEIIREKLFYSLRQE 211


>gi|222632589|gb|EEE64721.1| hypothetical protein OsJ_19577 [Oryza sativa Japonica Group]
          Length = 423

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 25/196 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + +LG  N GKS+L N +  + ++IVTD P TTR  +        Y + + DT G
Sbjct: 124 RSGY-VAVLGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPEYQIILYDTPG 182

Query: 277 IRETD-DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPKNI-------DFIFI 325
           + + +   ++   +K     V +AD +L++ +      K +    + +         + +
Sbjct: 183 VIKKEMHKLDTMMMKNVRSAVGSADCVLVVVDACKMPEKIDEILEEGVGNKDTELPVLLV 242

Query: 326 GTKSDL------------YSTYTEEYDHLISSFT-GEGLEELINKIKSILSNKFKKLPFS 372
             K DL            Y  +T   D +  S   G G++++   I S L       P  
Sbjct: 243 LNKKDLIKPGEIAKKLEWYQKFTNADDVIPISAKFGHGVDDIKEWILSKLPLGPAYYPKD 302

Query: 373 IPSHKRHLYHLSQTVR 388
           I S     + + + VR
Sbjct: 303 IASEHPERFFVGEIVR 318


>gi|125553352|gb|EAY99061.1| hypothetical protein OsI_21018 [Oryza sativa Indica Group]
          Length = 423

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 25/196 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + +LG  N GKS+L N +  + ++IVTD P TTR  +        Y + + DT G
Sbjct: 124 RSGY-VAVLGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPEYQIILYDTPG 182

Query: 277 IRETD-DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPKNI-------DFIFI 325
           + + +   ++   +K     V +AD +L++ +      K +    + +         + +
Sbjct: 183 VIKKEMHKLDTMMMKNVRSAVGSADCVLVVVDACKMPEKIDEILEEGVGNKDTELPVLLV 242

Query: 326 GTKSDL------------YSTYTEEYDHLISSFT-GEGLEELINKIKSILSNKFKKLPFS 372
             K DL            Y  +T   D +  S   G G++++   I S L       P  
Sbjct: 243 LNKKDLIKPGEIAKKLEWYQKFTNADDVIPISAKFGHGVDDIKEWILSKLPLGPAYYPKD 302

Query: 373 IPSHKRHLYHLSQTVR 388
           I S     + + + VR
Sbjct: 303 IASEHPERFFVGEIVR 318


>gi|284024626|ref|ZP_06379024.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus 132]
          Length = 299

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G SN GKS+  N +    +AI++D   TTR+ +   +  +   +   DT GI +  
Sbjct: 9   VSIIGRSNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGTKSDLY- 332
             +    +K     +   D I+ +   N +        I   KN       +  K DL  
Sbjct: 69  HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKIDLVH 128

Query: 333 ----STYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                   EEY           IS+  G  ++  I+ +K+ L    K  P    S     
Sbjct: 129 PDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGEIIR 196


>gi|324993803|gb|EGC25722.1| GTP-binding protein Era [Streptococcus sanguinis SK405]
 gi|324994878|gb|EGC26791.1| GTP-binding protein Era [Streptococcus sanguinis SK678]
 gi|327463077|gb|EGF09398.1| GTP-binding protein Era [Streptococcus sanguinis SK1]
 gi|327474678|gb|EGF20083.1| GTP-binding protein Era [Streptococcus sanguinis SK408]
 gi|327490236|gb|EGF22024.1| GTP-binding protein Era [Streptococcus sanguinis SK1058]
          Length = 299

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L +   +       +    IS+  G  +  LI+ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRQQMDFKEIVPISALQGNNVSYLIDILSENLEEGFQYFPEDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|195978544|ref|YP_002123788.1| GTP-binding protein Era [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|226741237|sp|B4U458|ERA_STREM RecName: Full=GTPase Era
 gi|195975249|gb|ACG62775.1| GTP-binding protein Era-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 298

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 7   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK----- 328
             +    ++  +  +   + +L +   + K+        E      I  I +  K     
Sbjct: 67  TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAARIPVILVINKIDKVH 126

Query: 329 --------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +E L+  +K  L   F+  P    +     
Sbjct: 127 PDQLLEQIDDFRSQMDFKEIVPISALQGNNVETLVQLLKDNLEEGFQYFPEDQITDHPER 186

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 187 FLVSEMVR 194


>gi|332880705|ref|ZP_08448378.1| hydrogenase maturation GTPase HydF [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681339|gb|EGJ54263.1| hydrogenase maturation GTPase HydF [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 399

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAG 276
           N + I + G  N+GKSSL N L  + VA+V+D+PGTT DV+  +++L G     + DTAG
Sbjct: 10  NRFHIGLFGRRNSGKSSLVNMLTGQQVAVVSDVPGTTTDVVLKNIELPGVGASVLVDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----NIDFIFIGTK 328
             +  ++     +++T       DL L++       ++KE ++ +     +I  ++I  K
Sbjct: 70  YDDEGELGGLR-VRQTVNAARRVDLALIIVSGLPDGAEKEKAWAERFRADDIPVLYIYNK 128

Query: 329 SDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D       +   +          S+ TGEG + L++ +  +     +    +
Sbjct: 129 VDEDGGSHADAWCMTLGATEVVSVSARTGEGRDRLLSAMAEVYRRTDEVEDLT 181


>gi|293365236|ref|ZP_06611953.1| GTP-binding protein Era [Streptococcus oralis ATCC 35037]
 gi|307703775|ref|ZP_07640716.1| GTP-binding protein Era [Streptococcus oralis ATCC 35037]
 gi|291316686|gb|EFE57122.1| GTP-binding protein Era [Streptococcus oralis ATCC 35037]
 gi|307622610|gb|EFO01606.1| GTP-binding protein Era [Streptococcus oralis ATCC 35037]
          Length = 299

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        +      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIDRLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L +   +  + +        S+  G  +  LI+ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRNQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|121605951|ref|YP_983280.1| GTP-binding protein Era [Polaromonas naphthalenivorans CJ2]
 gi|120594920|gb|ABM38359.1| GTP-binding protein Era [Polaromonas naphthalenivorans CJ2]
          Length = 357

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 7/141 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + V+I +    TTR  +T             DT G +   
Sbjct: 72  IAIVGKPNVGKSTLLNALVGQKVSITSRKAQTTRHRITGMRTRAATQFVFVDTPGFQTRH 131

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYST 334
                  + RT +  V + DLI+ + E       ++K     P+    I +  K DL   
Sbjct: 132 GNALNRSLNRTVVGAVNDVDLIVFVVEAGQFNLADAKVLALLPEKTPAILLANKFDLIHR 191

Query: 335 YTEEYDHLISSFTGEGLEELI 355
             E    L +        E +
Sbjct: 192 RAEIAPWLRAMQERHNFSEFV 212


>gi|170732445|ref|YP_001764392.1| GTP-binding protein Era [Burkholderia cenocepacia MC0-3]
 gi|169815687|gb|ACA90270.1| GTP-binding protein Era [Burkholderia cenocepacia MC0-3]
          Length = 287

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T     +       DT G +   
Sbjct: 2   IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPGFQTRH 61

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D+IL + E       + K     P  +  + I  K D  + 
Sbjct: 62  STALNRSLNRAVTSTLTSVDVILFVIEAGRFGPDDQKVLDLIPPGMPTLLIANKIDRVND 121

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               +  +               S+   E ++ L++ IK  L            + +   
Sbjct: 122 KATLFPFMQKVSELREFTELVPLSAQKPEDIKRLLDTIKPYLPEGEPIYGEDELTDRSSR 181

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 182 FLAAEILR 189


>gi|307299162|ref|ZP_07578963.1| GTP-binding protein Era [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914958|gb|EFN45344.1| GTP-binding protein Era [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 300

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 75/190 (39%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  + +AIV+D P TTR+ +   L  +   +   DT GI +  
Sbjct: 8   VALVGKPNVGKSTLINTIIGEKIAIVSDKPQTTRNRIGGILTTKKGQIVFYDTPGIHKPL 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS--KKEISFPKNI------DFIFIGTKSDLYS 333
             + +  +K     +  +DL+L++ +     ++      N              K D Y 
Sbjct: 68  HRLGQYILKVATSSLAGSDLLLVIVDPTDGLRESDRLVANHVNQSRIPVFLAINKVDEYK 127

Query: 334 TYTEEYDHL---------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                 D                 IS+  G+G+EEL+  I   L       P  + + + 
Sbjct: 128 NERLLQDFQAKAEELFNDIRRTFLISAKKGDGVEELLETIFDFLPEGKMLFPEDLITDRS 187

Query: 379 HLYHLSQTVR 388
             +  S+ +R
Sbjct: 188 SRFMASEVIR 197


>gi|301794107|emb|CBW36513.1| GTP-binding protein Era homolog [Streptococcus pneumoniae INV104]
 gi|332204972|gb|EGJ19037.1| GTP-binding protein Era [Streptococcus pneumoniae GA47901]
          Length = 299

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L S   +  + +        S+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPDR 187

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 188 FLVSEMVR 195


>gi|161869627|ref|YP_001598794.1| GTP-binding protein Era [Neisseria meningitidis 053442]
 gi|161595180|gb|ABX72840.1| GTPase [Neisseria meningitidis 053442]
          Length = 311

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 24/210 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +  +  R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 6   DIETFLAGERAADGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 64

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLK------EINSKKEI 314
              +       DT G +        + + +     +   D ++ +       + +     
Sbjct: 65  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDADRVVLK 124

Query: 315 SFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELINKI 358
             PK+   + +  K D                + + +       +S+  G  +  L+  I
Sbjct: 125 QLPKHTPVVLVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELI 184

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           K  L       P  + + K   +   + VR
Sbjct: 185 KPYLPESVPMYPEDMVTDKSARFLAMEIVR 214


>gi|325127805|gb|EGC50713.1| GTP-binding protein Era [Neisseria meningitidis N1568]
          Length = 307

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 24/210 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +  +  R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 2   DIETFLAGERAADGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 60

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLK------EINSKKEI 314
              +       DT G +        + + +     +   D ++ +       + +     
Sbjct: 61  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDADRVVLK 120

Query: 315 SFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELINKI 358
             PK+   I +  K D                + + +       +S+  G  +  L+  I
Sbjct: 121 QLPKHTPVILVVNKIDKDKAKDRYALETFVAQVRAEFEFAAAEAVSAKHGLRIANLLELI 180

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           K  L       P  + + K   +   + VR
Sbjct: 181 KPYLPESVPMYPEDMVTDKSARFLAMEIVR 210


>gi|239637621|ref|ZP_04678593.1| GTP-binding protein Era [Staphylococcus warneri L37603]
 gi|239596839|gb|EEQ79364.1| GTP-binding protein Era [Staphylococcus warneri L37603]
          Length = 299

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   DT GI +  
Sbjct: 9   VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-- 331
             +    +K     +   D I+ +  +N           ++          +  K DL  
Sbjct: 69  HKLGDYMMKVATNTLSEIDAIMFMVNVNEDIGRGDEYIMDMLKDLKTPVFLVLNKIDLVH 128

Query: 332 -------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     Y E  D      IS+  G  ++  I+ +KS L    K  P    S     
Sbjct: 129 PDALMPKIEKYQEYMDFTEIVPISALEGLNVDHFIDVLKSYLPEGPKYYPDDQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGEIIR 196


>gi|289167813|ref|YP_003446082.1| GTPase/GTP-binding protein Era [Streptococcus mitis B6]
 gi|288907380|emb|CBJ22217.1| GTPase/GTP-binding protein Era [Streptococcus mitis B6]
          Length = 299

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L S   +  + +        S+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|149006354|ref|ZP_01830066.1| GTP-binding protein Era [Streptococcus pneumoniae SP18-BS74]
 gi|169834294|ref|YP_001694414.1| GTP-binding protein Era [Streptococcus pneumoniae Hungary19A-6]
 gi|221231732|ref|YP_002510884.1| GTP-binding protein Era homolog [Streptococcus pneumoniae ATCC
           700669]
 gi|307127480|ref|YP_003879511.1| GTP-binding protein Era [Streptococcus pneumoniae 670-6B]
 gi|307704699|ref|ZP_07641598.1| GTP-binding protein Era [Streptococcus mitis SK597]
 gi|307706467|ref|ZP_07643276.1| GTP-binding protein Era [Streptococcus mitis SK321]
 gi|322376464|ref|ZP_08050957.1| GTP-binding protein Era [Streptococcus sp. M334]
 gi|226741241|sp|B1IBC9|ERA_STRPI RecName: Full=GTPase Era
 gi|254783666|sp|B8ZP66|ERA_STRPJ RecName: Full=GTPase Era
 gi|147762131|gb|EDK69093.1| GTP-binding protein Era [Streptococcus pneumoniae SP18-BS74]
 gi|168996796|gb|ACA37408.1| GTP-binding protein Era [Streptococcus pneumoniae Hungary19A-6]
 gi|220674192|emb|CAR68720.1| GTP-binding protein Era homolog [Streptococcus pneumoniae ATCC
           700669]
 gi|306484542|gb|ADM91411.1| GTP-binding protein Era [Streptococcus pneumoniae 670-6B]
 gi|307618177|gb|EFN97335.1| GTP-binding protein Era [Streptococcus mitis SK321]
 gi|307621746|gb|EFO00784.1| GTP-binding protein Era [Streptococcus mitis SK597]
 gi|321282271|gb|EFX59278.1| GTP-binding protein Era [Streptococcus sp. M334]
 gi|332075585|gb|EGI86053.1| GTP-binding protein Era [Streptococcus pneumoniae GA17545]
          Length = 299

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L S   +  + +        S+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 188 FLVSEMVR 195


>gi|255320779|ref|ZP_05361954.1| GTP-binding protein Era [Acinetobacter radioresistens SK82]
 gi|262379445|ref|ZP_06072601.1| GTP-binding protein Era [Acinetobacter radioresistens SH164]
 gi|255302156|gb|EET81398.1| GTP-binding protein Era [Acinetobacter radioresistens SK82]
 gi|262298902|gb|EEY86815.1| GTP-binding protein Era [Acinetobacter radioresistens SH164]
          Length = 342

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 77/210 (36%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +
Sbjct: 42  VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKSQAVYVDTPGMHKKE 101

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKN--IDFIFIGTKSD--- 330
              + K   +     + + +L+L + +      N    +   KN  +  I +  K D   
Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVVDAHKWTQNDDLVLEKLKNAEMPVILVINKIDTIE 161

Query: 331 ----LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
               L     E    +        S+  G  LE L + I   L  +     F   + +  
Sbjct: 162 EKRTLLPLIQERTKLMNFVEIVPVSALRGANLEHLRDTIDKYLPFQPPLYSFDQITDRSE 221

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M  L E +   D+ +   
Sbjct: 222 RFLASEVIREKIMRQLGE-ELPYDLTVQIE 250


>gi|254804569|ref|YP_003082790.1| GTP-binding protein Era [Neisseria meningitidis alpha14]
 gi|254668111|emb|CBA04671.1| GTP-binding protein Era [Neisseria meningitidis alpha14]
          Length = 313

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 24/210 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +  +  R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 8   DIETFLAGERAADGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 66

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLK------EINSKKEI 314
              +       DT G +        + + +     +   D ++ +       + +     
Sbjct: 67  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDADRVVLK 126

Query: 315 SFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELINKI 358
             PK+   I +  K D                + + +       +S+  G  +  L+  I
Sbjct: 127 QLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELI 186

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           K  L       P  + + K   +   + VR
Sbjct: 187 KPYLPESVPMYPEDMVTDKSARFLAMEIVR 216


>gi|261401059|ref|ZP_05987184.1| GTP-binding protein Era [Neisseria lactamica ATCC 23970]
 gi|269208948|gb|EEZ75403.1| GTP-binding protein Era [Neisseria lactamica ATCC 23970]
          Length = 318

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 24/210 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +  +  R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 13  DIETFLAGERAADGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 71

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLK------EINSKKEI 314
              +       DT G +        + + +     +   D ++ +       + +     
Sbjct: 72  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDADRVVLK 131

Query: 315 SFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELINKI 358
             PK+   I +  K D                + + +       +S+  G  +  L+  I
Sbjct: 132 QLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELI 191

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           K  L       P  + + K   +   + VR
Sbjct: 192 KPYLPESVPMYPEDMVTDKSARFLAMEIVR 221


>gi|117928001|ref|YP_872552.1| GTP-binding protein Era [Acidothermus cellulolyticus 11B]
 gi|117648464|gb|ABK52566.1| GTP-binding protein Era [Acidothermus cellulolyticus 11B]
          Length = 297

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 86/216 (39%), Gaps = 25/216 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   I+G  N GKS+L NA+ K  VAI +D P TTR V+   +      + + DT G
Sbjct: 6   RSGF-ACIVGRPNVGKSTLLNAMVKTKVAITSDRPQTTRHVVRGVVHRPDAQLVVVDTPG 64

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++           +   D+I+     + +          E++  K      + T
Sbjct: 65  LHKPRTLLGSRLNDLARATLAEVDVIVFCLPADERIGPGDRFLADELNRIK-TPTFAVVT 123

Query: 328 KSD-----------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K+D           L      ++     +S+ T   +E L++ + + L       P    
Sbjct: 124 KTDRVRKPRVAEQLLAVAELGDWAEIVPVSAVTDYQVELLVDLLVARLPEGRPYYPEGEV 183

Query: 375 SHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL 409
           + +     +++ +R   +  L +E    L ++ E +
Sbjct: 184 TDEPEQVLVAELIREAALGELRDELPHSLAVVVEEM 219


>gi|225011396|ref|ZP_03701834.1| GTP-binding protein Era [Flavobacteria bacterium MS024-2A]
 gi|225003899|gb|EEG41871.1| GTP-binding protein Era [Flavobacteria bacterium MS024-2A]
          Length = 296

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 92/209 (44%), Gaps = 23/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G+ N GKS+L NAL  K+++I+T    TTR  +   ++ + + + +SDT G+ +  
Sbjct: 11  ISIVGNPNVGKSTLMNALVGKELSIITAKAQTTRHRILGIINGDDFQMVLSDTPGVIKPA 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLYST 334
             ++   +      + + D+++ L        K E  F K        + +  K DL S 
Sbjct: 71  YEMQTSMMNFVKEALIDGDVLVYLVSPEETELKDEKLFEKIKKTKAPLLILINKIDLISQ 130

Query: 335 YTEEYD-------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
              E               + IS+ TG  + EL++ +   L       P    + K   +
Sbjct: 131 EALEASVLHWQTEFPKATVYPISALTGFFVPELLDILIGHLPESPAYFPKDQLTDKPERF 190

Query: 382 HLSQTVRY--LEMASLNEKDCGLDIIAEN 408
            +++++R   LE+ S  E    ++++ E+
Sbjct: 191 FVNESIREQILELYS-KEIPYAVEVVTED 218


>gi|307708604|ref|ZP_07645068.1| GTP-binding protein Era [Streptococcus mitis NCTC 12261]
 gi|307615353|gb|EFN94562.1| GTP-binding protein Era [Streptococcus mitis NCTC 12261]
          Length = 299

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      I  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKIPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L S   +  + +        S+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 188 FLVSEMVR 195


>gi|296273943|ref|YP_003656574.1| GTP-binding protein Era [Arcobacter nitrofigilis DSM 7299]
 gi|296098117|gb|ADG94067.1| GTP-binding protein Era [Arcobacter nitrofigilis DSM 7299]
          Length = 293

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 85/218 (38%), Gaps = 31/218 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKSSL N L  + +A+V+     TR    I +  E   V   DT GI ET+
Sbjct: 7   VSVVGRPNAGKSSLLNWLVGEKIAMVSHKANATRKRSNIIVMHEDDQVIFVDTPGIHETE 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTY 335
            ++ +  +      + + DLIL L  +        +  +   KN   I + TK D  S  
Sbjct: 67  KLLNQFMLDEALKAMGDCDLILFLAPVTDQVKYYEEFLLKNKKNTKHILLLTKIDFVSN- 125

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                        +  E+  +K +SI+       P SI     H   L   V+YL     
Sbjct: 126 ------EEVLAKMKEYEKFSDKYESII-------PVSIKKATTHADILDVVVKYL---PE 169

Query: 396 NEKDCGLDII-AENLRLASVSLGKITGCVDVEQLLDII 432
           +      +I+  E+LR        I      E + + I
Sbjct: 170 HPYLFDPEILTTEHLRD-------IFKEFIRESIFENI 200


>gi|295099666|emb|CBK88755.1| GTP-binding protein Era [Eubacterium cylindroides T2-87]
          Length = 300

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 83/204 (40%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ I I+G  NAGKS+L NAL K+ VAI++D P TTR+ +   L LE       DT 
Sbjct: 3   YRSGF-IAIVGRPNAGKSTLMNALLKEKVAIMSDKPNTTRNNIAGILTLEDAQYVFVDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN----SKKEISFPK----NIDFIFIGT 327
           GI +    + +   K  +  +E+ D+I  + +      S  E    +        I I  
Sbjct: 62  GIHKPRQQLGRVLNKNAYTAMEDCDVIGWIIDGTQSFGSGDEFILNRIEQLKKPVILIVN 121

Query: 328 KSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D+                Y  +    IS+     L EL++  +  L       P  + 
Sbjct: 122 KVDMVKKEKLLETLLGWQDRYNFDQIVPISALKENNLNELLDVFREYLPEGGMLYPSEMK 181

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           S     + + + +R   +    E+
Sbjct: 182 SDHDINFQICEIIREKILFKTREE 205


>gi|291276928|ref|YP_003516700.1| GTP-binding protein ERA [Helicobacter mustelae 12198]
 gi|290964122|emb|CBG39966.1| GTP-binding protein ERA homolog [Helicobacter mustelae 12198]
          Length = 304

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 83/220 (37%), Gaps = 28/220 (12%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGY- 267
           +  E  R GY + ++G  N GKS+  N +  + +A+V+     TR  +   I  + +G  
Sbjct: 2   QTNEQTRCGY-VGVIGKPNVGKSTFLNKIIGQQIALVSHKANATRKRMNFIIPFEEDGIQ 60

Query: 268 -LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKN 319
             +   DT G+ E   ++    +K      + +DLIL +            ++ ++F  N
Sbjct: 61  SQIIFVDTPGLYEGAKLLNVFMLKEAMRAHQESDLILFIISATDPYARQTYEEFLAFNAN 120

Query: 320 IDFIFIGTKSDLYST-----YTEEYDHLISSFTGE-----GLEELINKIKSILSNKFKKL 369
              I +  K DL          + Y      F          +E  + +  ++ +   K 
Sbjct: 121 KPHIILLNKIDLIDKKKLLSLLDSYQCHQDKFLAIIPFSAKKDEDFSALLRVIHHYLPKS 180

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           PF    ++   + +    + L   SL       D ++E L
Sbjct: 181 PFLFDMNQLTDHKMRDIYKELIRESL------FDFLSEEL 214


>gi|167040081|ref|YP_001663066.1| small GTP-binding protein [Thermoanaerobacter sp. X514]
 gi|256752602|ref|ZP_05493456.1| GTP-binding proten HflX [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914164|ref|ZP_07131480.1| GTP-binding proten HflX [Thermoanaerobacter sp. X561]
 gi|307724600|ref|YP_003904351.1| GTP-binding proten HflX [Thermoanaerobacter sp. X513]
 gi|166854321|gb|ABY92730.1| small GTP-binding protein [Thermoanaerobacter sp. X514]
 gi|256748540|gb|EEU61590.1| GTP-binding proten HflX [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889099|gb|EFK84245.1| GTP-binding proten HflX [Thermoanaerobacter sp. X561]
 gi|307581661|gb|ADN55060.1| GTP-binding proten HflX [Thermoanaerobacter sp. X513]
          Length = 413

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 98/258 (37%), Gaps = 18/258 (6%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            +++ E   ++ +  +   L  L G    +L+ +   I        + +      K  + 
Sbjct: 115 RAKSREGMLQVELAQLKYRLPRLVG-LGGQLSRLGGGIGTRGPGETKLETDRRHIKNRIK 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I     +I  H S  +          I I+G++NAGKS+L NAL   +V  V D    T
Sbjct: 174 AIEKKLEEIERHRSLQRERRKKNRIPVIAIVGYTNAGKSTLLNALTNAEV-YVEDKLFAT 232

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L  G  V + DT G          E  K T  E + ADL+L + ++ S   
Sbjct: 233 LDPTARRLVLPSGREVILIDTVGFIRKLPHDLVEAFKSTLEEAKYADLLLHVIDVTSPDM 292

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTE--EYDHLISSFTGEGLEELINKIK 359
               K            N   I +  K DL     +  E +  IS+    GL++L+  I+
Sbjct: 293 EEKIKVVEKVLSDLDVINTPRINVFNKIDLLDVVPKGNEKEIYISAKNKIGLDKLLQAIE 352

Query: 360 SILSNKFKKLPFSIPSHK 377
             +    + + F +P  K
Sbjct: 353 KEIFKDVEIVNFLLPYDK 370


>gi|288803891|ref|ZP_06409316.1| GTP-binding protein Era [Prevotella melaninogenica D18]
 gi|288333656|gb|EFC72106.1| GTP-binding protein Era [Prevotella melaninogenica D18]
          Length = 293

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++ E   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTEDTQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKN-----IDFIFIGTKSDLYST 334
             +++  ++ +   + +AD++L + ++  + +K + F +      I  I +  K D    
Sbjct: 67  YKMQEMMLQFSESALADADILLYVTDVVEDPEKNMDFLEKVSKMSIPVILLINKIDESDQ 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                                IS+    G++ L+ ++  +L  
Sbjct: 127 KTLGNLVTKWHGLLPNAEILPISAKNKFGVDILLRRVHELLPE 169


>gi|253999488|ref|YP_003051551.1| GTP-binding protein Era [Methylovorus sp. SIP3-4]
 gi|313201513|ref|YP_004040171.1| GTP-binding protein era [Methylovorus sp. MP688]
 gi|253986167|gb|ACT51024.1| GTP-binding protein Era [Methylovorus sp. SIP3-4]
 gi|312440829|gb|ADQ84935.1| GTP-binding protein Era [Methylovorus sp. MP688]
          Length = 300

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +    ++I +    TTR  L      +       DT G ++  
Sbjct: 16  VAIVGRPNVGKSTLLNHILGLKLSITSRKAQTTRHRLLGIHTTDDTQYLFVDTPGFQQKH 75

Query: 282 DIVEKEGIKRTF-LEVENADLILLLKEINSKKEIS------FPKNIDFIFIGTKSD---- 330
                  + +T    +   D++L + E     E         P+N   + +  K+D    
Sbjct: 76  VNALNRSLNKTVTQVLAEVDVVLFVIEPMHLGEADRLVLNMLPRNKPVLLVVNKADLMGD 135

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 L   +  E+       +S+     L+EL+  ++  L  +         + K   
Sbjct: 136 KGNLLPLIQDFDLEFPFTAIVPVSAKKNLYLDELLQAVRQHLPEQEAIYGEDELTDKNER 195

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 196 FLAAELLR 203


>gi|149019560|ref|ZP_01834879.1| GTP-binding protein Era [Streptococcus pneumoniae SP23-BS72]
 gi|147930935|gb|EDK81915.1| GTP-binding protein Era [Streptococcus pneumoniae SP23-BS72]
          Length = 299

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L S   +  + +        S+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMLR 195


>gi|15900846|ref|NP_345450.1| GTP-binding protein Era [Streptococcus pneumoniae TIGR4]
 gi|15902915|ref|NP_358465.1| GTP-binding protein Era [Streptococcus pneumoniae R6]
 gi|111657969|ref|ZP_01408676.1| hypothetical protein SpneT_02000858 [Streptococcus pneumoniae
           TIGR4]
 gi|116516762|ref|YP_816339.1| GTP-binding protein Era [Streptococcus pneumoniae D39]
 gi|148984711|ref|ZP_01817979.1| GTP-binding protein Era [Streptococcus pneumoniae SP3-BS71]
 gi|148992896|ref|ZP_01822515.1| GTP-binding protein Era [Streptococcus pneumoniae SP9-BS68]
 gi|148998595|ref|ZP_01826035.1| GTP-binding protein Era [Streptococcus pneumoniae SP11-BS70]
 gi|149002520|ref|ZP_01827454.1| GTP-binding protein Era [Streptococcus pneumoniae SP14-BS69]
 gi|149010385|ref|ZP_01831756.1| GTP-binding protein Era [Streptococcus pneumoniae SP19-BS75]
 gi|168483038|ref|ZP_02707990.1| GTP-binding protein Era [Streptococcus pneumoniae CDC1873-00]
 gi|168490212|ref|ZP_02714411.1| GTP-binding protein Era [Streptococcus pneumoniae SP195]
 gi|168491058|ref|ZP_02715201.1| GTP-binding protein Era [Streptococcus pneumoniae CDC0288-04]
 gi|168494398|ref|ZP_02718541.1| GTP-binding protein Era [Streptococcus pneumoniae CDC3059-06]
 gi|168575631|ref|ZP_02721567.1| GTP-binding protein Era [Streptococcus pneumoniae MLV-016]
 gi|182683915|ref|YP_001835662.1| GTP-binding protein Era [Streptococcus pneumoniae CGSP14]
 gi|225856627|ref|YP_002738138.1| GTP-binding protein Era [Streptococcus pneumoniae P1031]
 gi|225858762|ref|YP_002740272.1| GTP-binding protein Era [Streptococcus pneumoniae 70585]
 gi|225861144|ref|YP_002742653.1| GTP-binding protein Era [Streptococcus pneumoniae Taiwan19F-14]
 gi|237650882|ref|ZP_04525134.1| GTP-binding protein Era [Streptococcus pneumoniae CCRI 1974]
 gi|237821333|ref|ZP_04597178.1| GTP-binding protein Era [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229555|ref|ZP_06963236.1| GTP-binding protein Era [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254476|ref|ZP_06978062.1| GTP-binding protein Era [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503021|ref|YP_003724961.1| GTP-binding protein Era [Streptococcus pneumoniae TCH8431/19A]
 gi|303254436|ref|ZP_07340542.1| GTP-binding protein Era [Streptococcus pneumoniae BS455]
 gi|303259881|ref|ZP_07345856.1| GTP-binding protein Era [Streptococcus pneumoniae SP-BS293]
 gi|303262295|ref|ZP_07348239.1| GTP-binding protein Era [Streptococcus pneumoniae SP14-BS292]
 gi|303264717|ref|ZP_07350635.1| GTP-binding protein Era [Streptococcus pneumoniae BS397]
 gi|303267324|ref|ZP_07353184.1| GTP-binding protein Era [Streptococcus pneumoniae BS457]
 gi|303269129|ref|ZP_07354908.1| GTP-binding protein Era [Streptococcus pneumoniae BS458]
 gi|307067626|ref|YP_003876592.1| GTPase [Streptococcus pneumoniae AP200]
 gi|61223691|sp|P0A3C3|ERA_STRPN RecName: Full=GTPase Era
 gi|61223692|sp|P0A3C4|ERA_STRR6 RecName: Full=GTPase Era
 gi|122278775|sp|Q04KV9|ERA_STRP2 RecName: Full=GTPase Era
 gi|226741242|sp|B2IPC3|ERA_STRPS RecName: Full=GTPase Era
 gi|254783665|sp|C1C6U6|ERA_STRP7 RecName: Full=GTPase Era
 gi|254783669|sp|C1CK50|ERA_STRZP RecName: Full=GTPase Era
 gi|254783670|sp|C1CRT1|ERA_STRZT RecName: Full=GTPase Era
 gi|5305399|gb|AAD41632.1|AF072811_1 GTPase Era [Streptococcus pneumoniae]
 gi|14972444|gb|AAK75090.1| GTP-binding protein Era [Streptococcus pneumoniae TIGR4]
 gi|15458475|gb|AAK99675.1| GTPase/GTP-binding protein [Streptococcus pneumoniae R6]
 gi|116077338|gb|ABJ55058.1| GTP-binding protein Era [Streptococcus pneumoniae D39]
 gi|147755593|gb|EDK62640.1| GTP-binding protein Era [Streptococcus pneumoniae SP11-BS70]
 gi|147759457|gb|EDK66449.1| GTP-binding protein Era [Streptococcus pneumoniae SP14-BS69]
 gi|147764866|gb|EDK71795.1| GTP-binding protein Era [Streptococcus pneumoniae SP19-BS75]
 gi|147923102|gb|EDK74217.1| GTP-binding protein Era [Streptococcus pneumoniae SP3-BS71]
 gi|147928348|gb|EDK79364.1| GTP-binding protein Era [Streptococcus pneumoniae SP9-BS68]
 gi|172043458|gb|EDT51504.1| GTP-binding protein Era [Streptococcus pneumoniae CDC1873-00]
 gi|182629249|gb|ACB90197.1| GTP-binding protein Era [Streptococcus pneumoniae CGSP14]
 gi|183571455|gb|EDT91983.1| GTP-binding protein Era [Streptococcus pneumoniae SP195]
 gi|183574573|gb|EDT95101.1| GTP-binding protein Era [Streptococcus pneumoniae CDC0288-04]
 gi|183575685|gb|EDT96213.1| GTP-binding protein Era [Streptococcus pneumoniae CDC3059-06]
 gi|183578605|gb|EDT99133.1| GTP-binding protein Era [Streptococcus pneumoniae MLV-016]
 gi|225720717|gb|ACO16571.1| GTP-binding protein Era [Streptococcus pneumoniae 70585]
 gi|225725237|gb|ACO21089.1| GTP-binding protein Era [Streptococcus pneumoniae P1031]
 gi|225726867|gb|ACO22718.1| GTP-binding protein Era [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238616|gb|ADI69747.1| GTP-binding protein Era [Streptococcus pneumoniae TCH8431/19A]
 gi|301799945|emb|CBW32528.1| GTP-binding protein Era homolog [Streptococcus pneumoniae OXC141]
 gi|301801812|emb|CBW34523.1| GTP-binding protein Era homolog [Streptococcus pneumoniae INV200]
 gi|302598603|gb|EFL65643.1| GTP-binding protein Era [Streptococcus pneumoniae BS455]
 gi|302636618|gb|EFL67109.1| GTP-binding protein Era [Streptococcus pneumoniae SP14-BS292]
 gi|302639086|gb|EFL69546.1| GTP-binding protein Era [Streptococcus pneumoniae SP-BS293]
 gi|302641316|gb|EFL71684.1| GTP-binding protein Era [Streptococcus pneumoniae BS458]
 gi|302643134|gb|EFL73421.1| GTP-binding protein Era [Streptococcus pneumoniae BS457]
 gi|302645804|gb|EFL76033.1| GTP-binding protein Era [Streptococcus pneumoniae BS397]
 gi|306409163|gb|ADM84590.1| GTPase [Streptococcus pneumoniae AP200]
 gi|327389247|gb|EGE87592.1| GTP-binding protein Era [Streptococcus pneumoniae GA04375]
 gi|332073302|gb|EGI83781.1| GTP-binding protein Era [Streptococcus pneumoniae GA17570]
 gi|332076243|gb|EGI86709.1| GTP-binding protein Era [Streptococcus pneumoniae GA41301]
 gi|332201435|gb|EGJ15505.1| GTP-binding protein Era [Streptococcus pneumoniae GA47368]
 gi|332202824|gb|EGJ16893.1| GTP-binding protein Era [Streptococcus pneumoniae GA41317]
          Length = 299

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L S   +  + +        S+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 188 FLVSEMVR 195


>gi|114775464|ref|ZP_01451032.1| GTP-binding protein Era [Mariprofundus ferrooxydans PV-1]
 gi|114553575|gb|EAU55956.1| GTP-binding protein Era [Mariprofundus ferrooxydans PV-1]
          Length = 301

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 10/125 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG  N GKS+L N + +  VAIVT  P TTR  +    + +   +   DT GI + D
Sbjct: 11  VALLGRPNVGKSTLMNHIIRAKVAIVTPKPQTTRHRILGIYNDDARQLIFVDTPGIHKGD 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----------NIDFIFIGTKSDL 331
             + +  ++  +   E AD++ +++++    +    +              I +  K D 
Sbjct: 71  KQLNRNMVRIAYGAAEEADVLAIMQDVTCPLDRVTRELIERFADGRLKQPRIHVLNKVDA 130

Query: 332 YSTYT 336
                
Sbjct: 131 IKKEA 135


>gi|228476104|ref|ZP_04060812.1| GTP-binding protein Era [Staphylococcus hominis SK119]
 gi|314936312|ref|ZP_07843659.1| GTP-binding protein Era [Staphylococcus hominis subsp. hominis C80]
 gi|228269927|gb|EEK11407.1| GTP-binding protein Era [Staphylococcus hominis SK119]
 gi|313654931|gb|EFS18676.1| GTP-binding protein Era [Staphylococcus hominis subsp. hominis C80]
          Length = 299

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 67/188 (35%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +  E   +   DT GI +  
Sbjct: 9   VSIIGRPNVGKSTFMNRVIGHKIAIMSDKAQTTRNKIQGVMTREDAQIIFLDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY- 332
             +    ++     +   D I+ +  +N           E+          +  K DL  
Sbjct: 69  HKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKNVKTPVFLVLNKIDLVH 128

Query: 333 -STYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 + +             IS+  G  ++  I+ +K  L    K  P    S     
Sbjct: 129 PDALMPKIEKYKTYMDFTEIVPISALEGLNVDHFIDVLKDYLPEGPKYYPDDQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGEIIR 196


>gi|269795601|ref|YP_003315056.1| GTP-binding proten HflX [Sanguibacter keddieii DSM 10542]
 gi|269097786|gb|ACZ22222.1| GTP-binding proten HflX [Sanguibacter keddieii DSM 10542]
          Length = 515

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 96/234 (41%), Gaps = 26/234 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + N +  L+ +I++     + K     RN    + I G++NAGKSSL NAL   
Sbjct: 257 ELDRRRIRNRMAKLRREIAAMAPSRETKRSSRKRNAIPSVAIAGYTNAGKSSLLNALTGA 316

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G +  ++DT G   +      E  + T  EV ++DL+
Sbjct: 317 GVLVENALFATLDPTVRRTKTPDGRVYTLADTVGFVRSLPHQLVEAFRSTLEEVADSDLL 376

Query: 303 LLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYT-------EEYDHL 342
           L + + +               + I    ++  + +  K+DL    T       E    +
Sbjct: 377 LHVVDASHPDPEGQIAAVRHVLEGIPGALDVPEVIVLNKADLADPDTIARLRSRERTTLV 436

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL---YHLSQTVRYLEMA 393
           +S+ TGEG+ EL++ I   L +    +   +P  +  L    HL   + +LE  
Sbjct: 437 VSAHTGEGITELLDLISGALPHPGVTVDLIVPYSRGDLVNRVHLEGEIDHLEHV 490


>gi|121598208|ref|YP_993769.1| GTP-binding protein Era [Burkholderia mallei SAVP1]
 gi|134277678|ref|ZP_01764393.1| GTP-binding protein Era [Burkholderia pseudomallei 305]
 gi|217420968|ref|ZP_03452473.1| GTP-binding protein Era [Burkholderia pseudomallei 576]
 gi|226199901|ref|ZP_03795451.1| GTP-binding protein Era [Burkholderia pseudomallei Pakistan 9]
 gi|238562761|ref|ZP_00439922.2| GTP-binding protein Era [Burkholderia mallei GB8 horse 4]
 gi|242316819|ref|ZP_04815835.1| GTP-binding protein Era [Burkholderia pseudomallei 1106b]
 gi|251767269|ref|ZP_02266587.2| GTP-binding protein Era [Burkholderia mallei PRL-20]
 gi|254195962|ref|ZP_04902388.1| GTP-binding protein Era [Burkholderia pseudomallei S13]
 gi|254199233|ref|ZP_04905599.1| GTP-binding protein Era [Burkholderia mallei FMH]
 gi|254205540|ref|ZP_04911892.1| GTP-binding protein Era [Burkholderia mallei JHU]
 gi|254296872|ref|ZP_04964325.1| GTP-binding protein Era [Burkholderia pseudomallei 406e]
 gi|121227018|gb|ABM49536.1| GTP-binding protein Era [Burkholderia mallei SAVP1]
 gi|134251328|gb|EBA51407.1| GTP-binding protein Era [Burkholderia pseudomallei 305]
 gi|147748829|gb|EDK55903.1| GTP-binding protein Era [Burkholderia mallei FMH]
 gi|147752983|gb|EDK60048.1| GTP-binding protein Era [Burkholderia mallei JHU]
 gi|157807734|gb|EDO84904.1| GTP-binding protein Era [Burkholderia pseudomallei 406e]
 gi|169652707|gb|EDS85400.1| GTP-binding protein Era [Burkholderia pseudomallei S13]
 gi|217396380|gb|EEC36397.1| GTP-binding protein Era [Burkholderia pseudomallei 576]
 gi|225927957|gb|EEH23994.1| GTP-binding protein Era [Burkholderia pseudomallei Pakistan 9]
 gi|238522002|gb|EEP85449.1| GTP-binding protein Era [Burkholderia mallei GB8 horse 4]
 gi|242140058|gb|EES26460.1| GTP-binding protein Era [Burkholderia pseudomallei 1106b]
 gi|243063330|gb|EES45516.1| GTP-binding protein Era [Burkholderia mallei PRL-20]
          Length = 311

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    L+       DT G +   
Sbjct: 26  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLDDAQYIFVDTPGFQTRH 85

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P     + +  K D  S 
Sbjct: 86  STALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPGTPTLLVANKLDRVSD 145

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               Y                  S+   E ++ L+N IK  L            + +   
Sbjct: 146 KDTLYPFFQKMGGLREFAEIVPLSAKHPEDIQRLMNTIKPYLPEGDAIYGEDDLTDRSSR 205

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 206 FLAAEILR 213


>gi|260910018|ref|ZP_05916701.1| GTP-binding protein Era [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635848|gb|EEX53855.1| GTP-binding protein Era [Prevotella sp. oral taxon 472 str. F0295]
          Length = 293

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 77/187 (41%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++     +  SDT GI + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTPEVQIVFSDTPGILKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPK-----NIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++  + +K   F +      I  + +  K D    
Sbjct: 67  YKLQESMLAFSVSALNDADVLLYVTDVVEDPEKNADFLEKVRGMKIPVLLLINKIDESDQ 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                                IS+    G + L+ +I+ +L            + K   +
Sbjct: 127 KSLGDIVERWHALLPNAEILPISAKNKFGTDLLLRRIQELLPESPPYFDKDQLTDKPARF 186

Query: 382 HLSQTVR 388
            +S+ +R
Sbjct: 187 FVSEIIR 193


>gi|320527305|ref|ZP_08028490.1| GTP-binding protein Era [Solobacterium moorei F0204]
 gi|320132329|gb|EFW24874.1| GTP-binding protein Era [Solobacterium moorei F0204]
          Length = 297

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 80/194 (41%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R+G+ + + G  NAGKS+L N+L  + VAIV+  P TTR  +      E   +  +DT 
Sbjct: 1   MRSGF-VALAGRPNAGKSTLINSLIGEKVAIVSSKPQTTRSEIRGIYTDENCQIIFTDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--KEISFPKNI------DFIFIGT 327
           GI +    +E    K     ++  DLI L+ + ++   K   F  N+          +  
Sbjct: 60  GIHKPKFRLESRMNKEAADVIQGVDLIYLVVDASTPYAKGDEFVLNMVKNTGLPVFLVLN 119

Query: 328 KSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D         +   + E YD      +S+  G   E+LI      L       P  + 
Sbjct: 120 KMDKMQPEKIVKVIQQWQERYDFAEYFPLSAKFGRSFEDLIKTTSKYLPEGDLLYPAEMT 179

Query: 375 SHKRHLYHLSQTVR 388
           S     + +++ +R
Sbjct: 180 SDGAENFRIAELIR 193


>gi|56751355|ref|YP_172056.1| GTP-binding protein Era [Synechococcus elongatus PCC 6301]
 gi|81298971|ref|YP_399179.1| GTP-binding protein Era [Synechococcus elongatus PCC 7942]
 gi|56686314|dbj|BAD79536.1| GTP-binding protein ERA homolog [Synechococcus elongatus PCC 6301]
 gi|81167852|gb|ABB56192.1| GTP-binding protein Era [Synechococcus elongatus PCC 7942]
          Length = 311

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 80/208 (38%), Gaps = 24/208 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ + ++G  N GKS+L N L  + +AI + +  TTR+ L   L  +   +   D
Sbjct: 13  EGFRSGF-VALIGRPNVGKSTLMNHLVGQKIAITSPVAQTTRNRLRGVLTTDQVQIVFVD 71

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           T GI +    +    ++     +   DL+L + + +           ++     +  +  
Sbjct: 72  TPGIHKPQHQLGSVLVQNASSAIRIVDLVLFVVDGSVPAGRGDAFIADLIQRAGVPTVLG 131

Query: 326 GTKSDL------------YSTYTEEYD---HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             K D             Y+    + D      S+ TG G   L+ ++   L       P
Sbjct: 132 LNKVDRQLPEDAEAIAASYAQLAGDRDWPLQTFSATTGAGTGALLEQLTHALEPGPYYYP 191

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398
             + + +   + +++ +R   +    E+
Sbjct: 192 PDLITDQPERFIMAELIREQILLQTREE 219


>gi|207108954|ref|ZP_03243116.1| GTP-binding protein EngA [Helicobacter pylori HPKX_438_CA4C1]
          Length = 121

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 4/98 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKSSLFN LA++ +AI +D  GTTRD+    + L G+ V++ DT G+ + D
Sbjct: 11  IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISF 316
            ++ KE         + +DLIL + +   I S +++  
Sbjct: 70  ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKL 107


>gi|33861837|ref|NP_893398.1| GTP-binding protein Era [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33640205|emb|CAE19740.1| GTP-binding protein ERA homolog [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 303

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 78/195 (40%), Gaps = 23/195 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + +LG  N GKS+L N L  + + I + +  TTR+ L   L  +   +   DT 
Sbjct: 4   YKSGF-VTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNKLKGILTTKFGQIIFVDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           G+ +   ++ +  +K     +   D+++L+ + + +        K+       +FI    
Sbjct: 63  GVHKPHHLLGEILVKNAKSAINGVDMVVLVLDSSVEPGRGDEYIKDFLVANKTEFIVALN 122

Query: 328 KSDLYSTY--------------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL +                  +   ++S+  G+G  ELI+ I + L           
Sbjct: 123 KWDLVNKEFKSLRLDQYRKVFGNSKNFQIVSASEGDGCSELIDIILNFLPIGPMLYEEET 182

Query: 374 PSHKRHLYHLSQTVR 388
              +     L+  VR
Sbjct: 183 ICDQPLDNLLADLVR 197


>gi|323140518|ref|ZP_08075445.1| hydrogenase maturation GTPase HydF [Phascolarctobacterium sp. YIT
           12067]
 gi|322414970|gb|EFY05762.1| hydrogenase maturation GTPase HydF [Phascolarctobacterium sp. YIT
           12067]
          Length = 408

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 21/164 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSSL NA+  +++AIV++  GTT D +   ++L     V I DT G
Sbjct: 10  ERIHIGIFGKRNAGKSSLINAITSQELAIVSEQKGTTTDPVYKAMELLPLGPVMIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTK 328
           + +  ++  +  I +    +   D+ LL+ + +        +  +    K +  I +  K
Sbjct: 70  LDDEGELGAQR-IAKAQQVLNKCDIALLVVDASVGLSEADKALWQQLQAKKLPSILVLNK 128

Query: 329 SDLYSTYTE-----------EYDHLISSFTGEGLEELINKIKSI 361
            +L     +           +   L+S+ T   + EL   I ++
Sbjct: 129 VELLDEMRQALLTMEAMKLTKQCFLVSAITNRNINELKEAIAAL 172


>gi|332992354|gb|AEF02409.1| GTPase Era [Alteromonas sp. SN2]
          Length = 303

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 13  VAIVGRPNVGKSTLLNRLLGQKVSITSRKPQTTRHRILGIDTEGDYQAIYVDTPGLHSEE 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     +    L+L + E    N   E+   K     +    I  K D   
Sbjct: 73  KSAMNRYMNRAASSSLAEVGLVLFVIEGTRWNDDDEMVLSKVKASGLPCYLIVNKMDKVD 132

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L   Y  E+   IS+  G+ ++++   +   L       P    + +  
Sbjct: 133 DKEAFMVHLQGLSEKYKFEHIIPISAKQGKMVDDIRELVAKSLPESEFFFPEDYITDRSS 192

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 193 RFMAAEIIR 201


>gi|323499982|ref|ZP_08104938.1| GTPase Era [Vibrio sinaloensis DSM 21326]
 gi|323314948|gb|EGA68003.1| GTPase Era [Vibrio sinaloensis DSM 21326]
          Length = 325

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 23/203 (11%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            Q    E    G+ + I+G  N GKS+L N +  + ++I +  P TTR  +        Y
Sbjct: 21  EQATSPENQHCGF-VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDY 79

Query: 268 LVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----N 319
                DT G+  E    + +   +     + + +L+  L +     +  E+   K    N
Sbjct: 80  QAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDGTHWTNDDEMVLTKLQKSN 139

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNK 365
              +    K D      +   H++              S+  G+ ++ L   ++  L   
Sbjct: 140 FPVVLCVNKVDNVQDRNDVMLHMMEMSKKMDFVDVVPISAKHGKNIDVLRKHVRDHLPKA 199

Query: 366 FKKLPFSIPSHKRHLYHLSQTVR 388
               P    + +   +  S+ VR
Sbjct: 200 THHFPEEYVTDRSQRFMASEIVR 222


>gi|319787579|ref|YP_004147054.1| GTP-binding protein Era [Pseudoxanthomonas suwonensis 11-1]
 gi|317466091|gb|ADV27823.1| GTP-binding protein Era [Pseudoxanthomonas suwonensis 11-1]
          Length = 307

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 87/230 (37%), Gaps = 33/230 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + ++G  N GKS+L NAL    V+IV++ P TTR  L     + G  + + DT G+    
Sbjct: 15  VAVVGRPNVGKSTLVNALVGAKVSIVSNRPQTTRHRLLGIATVPGGQMLLVDTPGLHRQE 74

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKS 329
            R     + +   +     VE+ D  +L+ E     E       +     I  + +  K 
Sbjct: 75  GRFKASAMSRVMNRTARGAVEDVDAAVLVVEAGRWDEEDSHAFKVLSDAGIPVVLVVNKV 134

Query: 330 D-------LYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           D       L     E          H +S+   +GLE L+  + ++L            +
Sbjct: 135 DRLKDKSTLLPFLAEVSKDRQFAAVHPVSALKRKGLEALVADVLALLPEAPPVYDEDEIT 194

Query: 376 HKRHLYHLSQTVRYLEMASLNEK-----DCGLDIIAENLRLASVSLGKIT 420
            +   +   + VR   M  L ++        ++  AE+   A + +G + 
Sbjct: 195 DRSQRFLAGELVREQLMRQLGDELPYATTVEIERFAED--GALLRIGAVI 242


>gi|225854473|ref|YP_002735985.1| GTP-binding protein Era [Streptococcus pneumoniae JJA]
 gi|254783668|sp|C1CDW4|ERA_STRZJ RecName: Full=GTPase Era
 gi|225722974|gb|ACO18827.1| GTP-binding protein Era [Streptococcus pneumoniae JJA]
          Length = 299

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L S   +  + +        S+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLGEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 188 FLVSEMVR 195


>gi|168485921|ref|ZP_02710429.1| GTP-binding protein Era [Streptococcus pneumoniae CDC1087-00]
 gi|183571044|gb|EDT91572.1| GTP-binding protein Era [Streptococcus pneumoniae CDC1087-00]
          Length = 299

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L S   +  + +        S+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 188 FLVSEMVR 195


>gi|167903626|ref|ZP_02490831.1| GTP-binding protein Era [Burkholderia pseudomallei NCTC 13177]
          Length = 299

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    L+       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLDDAQYIFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P     + +  K D  S 
Sbjct: 74  STALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPGTPTLLVANKLDRVSD 133

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               Y                  S+   E ++ L+N IK  L            + +   
Sbjct: 134 KDTLYPFFQKMGGLREFAEIVPLSAKHPEDIQRLMNTIKPYLPEGDAIYGEDDLTDRSSR 193

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 194 FLAAEILR 201


>gi|148988412|ref|ZP_01819859.1| GTP-binding protein Era [Streptococcus pneumoniae SP6-BS73]
 gi|147926093|gb|EDK77167.1| GTP-binding protein Era [Streptococcus pneumoniae SP6-BS73]
          Length = 245

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L S   +  + +        S+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 188 FLVSEMVR 195


>gi|189345893|ref|YP_001942422.1| GTP-binding protein Era [Chlorobium limicola DSM 245]
 gi|189340040|gb|ACD89443.1| GTP-binding protein Era [Chlorobium limicola DSM 245]
          Length = 305

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 26/192 (13%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           VI G  NAGKS+L N L    ++IVT  P TTR  +T         +   DT GI +   
Sbjct: 12  VIAGQPNAGKSTLLNKLLDYKLSIVTPKPQTTRKKITGIYHDNRRQIIFLDTPGIMQPQQ 71

Query: 283 IVEKEGIKRTFLEVENADLILLLK---------EINSKKEI----SFPKNIDFIFIGTKS 329
            + +  +  T   +E AD++  L          +++   E+      P     I +  KS
Sbjct: 72  KLHESMLAITRRTLEEADVVTALIPYTKGSEPYDLDFTAELFNAWLKPAGKPVIAVLNKS 131

Query: 330 DLYSTYTEE-------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           D+ S   +E                 +S+  G GLE+L+  +   L       P  + S 
Sbjct: 132 DIVSRAVQEKAESVMTQLFSPAAVISVSALEGTGLEKLVEALTPFLPMDEPLYPEDMLST 191

Query: 377 KRHLYHLSQTVR 388
               + +S+ +R
Sbjct: 192 APERFFVSEIIR 203


>gi|323356745|ref|YP_004223141.1| GTPase [Microbacterium testaceum StLB037]
 gi|323273116|dbj|BAJ73261.1| GTPase [Microbacterium testaceum StLB037]
          Length = 505

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 28/250 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQ--GKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+  +         K  E  R+    + I G++NAGKSSL N L   
Sbjct: 250 ELDRRRIRTKMALLRKQLRDFAPARAAKRAERKRHTIPSVAIAGYTNAGKSSLLNRLTSA 309

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G +  ++DT G          E  + T  EV +AD+I
Sbjct: 310 GVLVENALFATLDATVRRSETTDGRVYTLTDTVGFVRNLPHQLVEAFRSTLEEVGDADVI 369

Query: 303 LLLKEINSKKEISFPKNI------------DFIFIGTKSDLYSTYTE-------EYDHLI 343
           L + + +     +    +              I +  K+DL S            + H +
Sbjct: 370 LHVVDASHPDPAAQLATVRDVMGDVEADFGHEIVVFNKADLVSDDDRLVLRGLAPHAHFV 429

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK------RHLYHLSQTVRYLEMASLNE 397
           SS TGEG++EL   I+  L     ++   +P  +       H   L     + E  +   
Sbjct: 430 SSRTGEGIDELRAAIEEALPRPAVEVQAVVPYDRGDLVSAVHESGLILAQEHRETGTFLH 489

Query: 398 KDCGLDIIAE 407
              G  + AE
Sbjct: 490 AHVGARLAAE 499


>gi|253576082|ref|ZP_04853414.1| GTP-binding protein Era [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844425|gb|EES72441.1| GTP-binding protein Era [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 300

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 79/211 (37%), Gaps = 22/211 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D P TTR+ +      E   +   DT GI +  
Sbjct: 11  VAIVGRPNVGKSTLMNHIIGQKIAIMSDKPQTTRNKIHGVYTSEEMQIVFLDTPGIHKRQ 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKSD--- 330
             +           +   + +L L +         +  I   K+     I +  K D   
Sbjct: 71  SKLGDYMNTTALNTLGEVEAVLFLVDAAEGLGGGDRFIIERLKDVRTPVILVLNKIDRVE 130

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 L   Y++ Y       IS+  G  +  L+ +I   L    +  P    +     
Sbjct: 131 PEQLLPLIEEYSKLYPFSEIVPISAMLGNNVNRLLEQIGKYLPEGPQYYPEDQVTDHPEQ 190

Query: 381 YHLSQTVRY-LEMASLNEKDCGLDIIAENLR 410
           +  ++ +R  +   +  E    + +  E++R
Sbjct: 191 FVCAELIREKILHLTREEVPHSIAVTIEDMR 221


>gi|227485371|ref|ZP_03915687.1| GTP-binding protein, GTPase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236662|gb|EEI86677.1| GTP-binding protein, GTPase [Anaerococcus lactolyticus ATCC 51172]
          Length = 385

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 13/169 (7%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           +     I I G +N+GKS+L N L  +D AIV+ I GTT D +   +++  +  V   DT
Sbjct: 9   LSERVYIGIFGKTNSGKSTLLNYLTGQDAAIVSPIEGTTTDPIRKAMEITDFGPVVFIDT 68

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-KNIDFIFIGTKSD--- 330
           AG  +   +  KE  ++T  E++  D+ L +       EI    K+   I++  K D   
Sbjct: 69  AGTADETQLG-KERYEKTLAEIDKVDVFLYVLSSGDDLEIIPKFKDKPVIYMAMKVDTGE 127

Query: 331 ---LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
              +   +  +    +   + +  +E+ +KIK++    +KK   +I  +
Sbjct: 128 GSQILKAFAGKNPIGVDLASTKSRDEIFSKIKAL----YKKEDLTITKN 172


>gi|37222111|gb|AAP49305.1| Uvs062 [uncultured bacterium]
          Length = 304

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 21/208 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +  
Sbjct: 19  VNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQLVLSDTPGIIKPA 78

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDL--- 331
             +++  +       E+AD+++ + EI     K E  F K     I  + +  K D    
Sbjct: 79  YEMQESMMNFVKSAFEDADILIYMVEIGEQDLKDEAFFNKIIHAKIPVLLLLNKIDNSNQ 138

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                                IS+     + E+  +I  +L       P    + K   +
Sbjct: 139 EQLEEQVAFWKEKVPNAEIFPISALQNFNVPEVFGRIIELLPESPAYYPKDQLTDKPERF 198

Query: 382 HLSQTVRYLEMAS-LNEKDCGLDIIAEN 408
            +++T+R   + +   E    ++I+ E 
Sbjct: 199 FVNETIREKILLNYSKEIPYAVEIVTEE 226


>gi|55822589|ref|YP_141030.1| GTP-binding protein Era [Streptococcus thermophilus CNRZ1066]
 gi|55738574|gb|AAV62215.1| GTP-binding protein [Streptococcus thermophilus CNRZ1066]
          Length = 299

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDLY- 332
             +    ++  +  +   D +L +   +  +       I   K   +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKQAKVPVILVVNKIDRVH 127

Query: 333 -STYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                E+ D             IS+  G  +  L++     L   F+  P    +     
Sbjct: 128 PDQLLEQIDDFRKQMDFKEIIPISALQGNNVSHLVDVSSDYLEEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|218508068|ref|ZP_03505946.1| GTP-binding protein EngA [Rhizobium etli Brasil 5]
          Length = 322

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 29/194 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R 
Sbjct: 52  LRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRR 111

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      +  A+ ++++ +     E        +   +    +    K
Sbjct: 112 KARVTEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLVLREGRAAVLAFNK 171

Query: 329 SD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D                  L           IS  TG GL++L+  I        K++ 
Sbjct: 172 WDMIEDRQAVLADLREKTDRLLPQARGIRAVPISCQTGWGLDKLMQSIIDTDRVWNKRIS 231

Query: 371 FSIPSHKRHLYHLS 384
            +  +       + 
Sbjct: 232 TARLNRWLETQQIQ 245


>gi|148981906|ref|ZP_01816564.1| GTP-binding protein Era [Vibrionales bacterium SWAT-3]
 gi|145960707|gb|EDK26049.1| GTP-binding protein Era [Vibrionales bacterium SWAT-3]
          Length = 323

 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 23/203 (11%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            Q  L E    G+ I I+G  N GKS+L N +  + ++I +  P TTR  +        Y
Sbjct: 19  KQPSLPENQHCGF-IAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRIMGVETEGDY 77

Query: 268 LVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNID 321
                DT G+  E    + +   +     + + +L+  L +      + +  ++  K  D
Sbjct: 78  QAIFVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDGTHWTEDDEMVLNKLKKTD 137

Query: 322 FIFIG--TKSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNK 365
           F  +    K D     T    H++              S+  G+ ++ L   ++  L   
Sbjct: 138 FPVVLCINKVDNVQDRTNVMQHMMEVSKKMDFIDVVPISAKQGKNIDVLRKHVREHLPKA 197

Query: 366 FKKLPFSIPSHKRHLYHLSQTVR 388
               P    + +   +  S+ +R
Sbjct: 198 THHFPEEYVTDRSQRFMASEIIR 220


>gi|53720034|ref|YP_109020.1| GTP-binding protein Era [Burkholderia pseudomallei K96243]
 gi|53725350|ref|YP_102340.1| GTP-binding protein Era [Burkholderia mallei ATCC 23344]
 gi|76810513|ref|YP_334275.1| GTP-binding protein Era [Burkholderia pseudomallei 1710b]
 gi|124386404|ref|YP_001028765.1| GTP-binding protein Era [Burkholderia mallei NCTC 10229]
 gi|126449368|ref|YP_001081327.1| GTP-binding protein Era [Burkholderia mallei NCTC 10247]
 gi|126451757|ref|YP_001067086.1| GTP-binding protein Era [Burkholderia pseudomallei 1106a]
 gi|167720557|ref|ZP_02403793.1| GTP-binding protein Era [Burkholderia pseudomallei DM98]
 gi|167739550|ref|ZP_02412324.1| GTP-binding protein Era [Burkholderia pseudomallei 14]
 gi|167816751|ref|ZP_02448431.1| GTP-binding protein Era [Burkholderia pseudomallei 91]
 gi|167825158|ref|ZP_02456629.1| GTP-binding protein Era [Burkholderia pseudomallei 9]
 gi|167846655|ref|ZP_02472163.1| GTP-binding protein Era [Burkholderia pseudomallei B7210]
 gi|167895243|ref|ZP_02482645.1| GTP-binding protein Era [Burkholderia pseudomallei 7894]
 gi|167911875|ref|ZP_02498966.1| GTP-binding protein Era [Burkholderia pseudomallei 112]
 gi|167919872|ref|ZP_02506963.1| GTP-binding protein Era [Burkholderia pseudomallei BCC215]
 gi|237813194|ref|YP_002897645.1| GTP-binding protein Era [Burkholderia pseudomallei MSHR346]
 gi|254177634|ref|ZP_04884289.1| GTP-binding protein Era [Burkholderia mallei ATCC 10399]
 gi|254184211|ref|ZP_04890801.1| GTP-binding protein Era [Burkholderia pseudomallei 1655]
 gi|254191246|ref|ZP_04897750.1| GTP-binding protein Era [Burkholderia pseudomallei Pasteur 52237]
 gi|254259591|ref|ZP_04950645.1| GTP-binding protein Era [Burkholderia pseudomallei 1710a]
 gi|254357707|ref|ZP_04973980.1| GTP-binding protein Era [Burkholderia mallei 2002721280]
 gi|52210448|emb|CAH36431.1| GTP-binding protein Era [Burkholderia pseudomallei K96243]
 gi|52428773|gb|AAU49366.1| GTP-binding protein Era [Burkholderia mallei ATCC 23344]
 gi|76579966|gb|ABA49441.1| GTP-binding protein Era [Burkholderia pseudomallei 1710b]
 gi|124294424|gb|ABN03693.1| GTP-binding protein Era [Burkholderia mallei NCTC 10229]
 gi|126225399|gb|ABN88939.1| GTP-binding protein Era [Burkholderia pseudomallei 1106a]
 gi|126242238|gb|ABO05331.1| GTP-binding protein Era [Burkholderia mallei NCTC 10247]
 gi|148026834|gb|EDK84855.1| GTP-binding protein Era [Burkholderia mallei 2002721280]
 gi|157938918|gb|EDO94588.1| GTP-binding protein Era [Burkholderia pseudomallei Pasteur 52237]
 gi|160698673|gb|EDP88643.1| GTP-binding protein Era [Burkholderia mallei ATCC 10399]
 gi|184214742|gb|EDU11785.1| GTP-binding protein Era [Burkholderia pseudomallei 1655]
 gi|237503411|gb|ACQ95729.1| GTP-binding protein Era [Burkholderia pseudomallei MSHR346]
 gi|254218280|gb|EET07664.1| GTP-binding protein Era [Burkholderia pseudomallei 1710a]
          Length = 299

 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    L+       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLDDAQYIFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P     + +  K D  S 
Sbjct: 74  STALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPGTPTLLVANKLDRVSD 133

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               Y                  S+   E ++ L+N IK  L            + +   
Sbjct: 134 KDTLYPFFQKMGGLREFAEIVPLSAKHPEDIQRLMNTIKPYLPEGDAIYGEDDLTDRSSR 193

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 194 FLAAEILR 201


>gi|148656458|ref|YP_001276663.1| small GTP-binding protein [Roseiflexus sp. RS-1]
 gi|148568568|gb|ABQ90713.1| small GTP-binding protein [Roseiflexus sp. RS-1]
          Length = 454

 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 92/255 (36%), Gaps = 33/255 (12%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +V        +  +     ++  H    +          I I+G++NAGKS+L NAL+  
Sbjct: 188 EVDRRLIARRIQWLEQQIEEVHRHREVYRERRRQSGIPVIAIVGYTNAGKSTLLNALSGA 247

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V    D    T D  T  + L  G    ++DT G  +          + T  E+  AD+
Sbjct: 248 NV-RAEDRLFATLDPTTRQVTLPGGQQALLTDTVGFIQKLPTQLVAAFRATLEEIREADV 306

Query: 302 ILLLKEINSKKEIS------------FPKNIDFIFIGTKSDLYSTYTE------------ 337
           +L + +I                     ++   I +  K DL +   E            
Sbjct: 307 LLHVLDITHPNAAQQTQTVLDTLRDLHVEDRPIITVLNKVDLMAGMNEVETERVAEALGM 366

Query: 338 -EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV------RYL 390
            +    +S+  G GL+ L+++I+  LS +   L   IP  +  L  L          RY 
Sbjct: 367 PDDYVAVSARKGWGLDTLLSRIEQTLSERMMPLTAFIPYRRNDLVSLWHMRGVIDEERYE 426

Query: 391 EMASLNEKDCGLDII 405
              +L      ++++
Sbjct: 427 AEGTLIAGRLPVELL 441


>gi|332305562|ref|YP_004433413.1| GTP-binding protein Era [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172891|gb|AEE22145.1| GTP-binding protein Era [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 300

 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L NAL  + V+I +  P TTR  +      E       DT G+  E 
Sbjct: 10  IAIVGRPNVGKSTLLNALLGQKVSITSRKPQTTRHRIMGIDTEENRQAIYVDTPGLHIEE 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     + +  L+L + E    N   ++   K    N+    I  KSD   
Sbjct: 70  KRAINRFMNRAASSSIADVGLVLFVVEGTKWNDDDQMVLNKVMQSNVPCWLIVNKSDNVK 129

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L   +  +    IS+  G+ + EL   +   L       P    + +  
Sbjct: 130 DKEILLPHLKWLGEQHAFDKIMPISARNGKNVNELREMVNESLPESEFYFPEDYITDRSS 189

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 190 RFMAAEIIR 198


>gi|282900463|ref|ZP_06308412.1| Small GTP-binding protein [Cylindrospermopsis raciborskii CS-505]
 gi|281194656|gb|EFA69604.1| Small GTP-binding protein [Cylindrospermopsis raciborskii CS-505]
          Length = 308

 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 8/143 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L  + +AI + +  TTR+ L   L  E   +   DT GI +  
Sbjct: 19  IGIIGRPNVGKSTLMNQLIGQKIAITSPVAQTTRNRLRGILTREKAQLIFVDTPGIHKPH 78

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNIDFIFI--GTKSDLYS 333
             + +  ++   + + + D++L + +  +      +  +      +   I    K D   
Sbjct: 79  HPLGEVLVQNAKIAITSVDVVLFVVDGTAVCGGGDRFIVDLLTKCEIPVIMGINKIDQQP 138

Query: 334 TYTEEYDHLISSFTGEGLEELIN 356
              E+ D        E   +++ 
Sbjct: 139 AEAEKIDESYRELARENQWQIVK 161


>gi|320537379|ref|ZP_08037334.1| GTP-binding protein Era [Treponema phagedenis F0421]
 gi|320145844|gb|EFW37505.1| GTP-binding protein Era [Treponema phagedenis F0421]
          Length = 295

 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 26/207 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R+G  + I+G  +AGKS+  N    + V+IV+DIP TTR+ +   ++     +   DT 
Sbjct: 1   MRSGI-VTIIGRPSAGKSTFLNTACGEKVSIVSDIPQTTRNAVRGIVNTNKGQIVFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGT 327
           G   ++    K+  + T  ++  AD IL L + + +  +                +    
Sbjct: 60  GYHASEKKFNKQLQEITCAKLAEADAILYLVDSSKEFGVEEESICALLSTLQNKIVIGLN 119

Query: 328 KSDL---------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           K DL                S         IS+   + + EL++ + ++L       P  
Sbjct: 120 KVDLPEAKPQLLTVNITNRLSEIPLNRFIQISAEKDQKINELLSCLMTLLPEGEPLYPPD 179

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKD 399
             + +   + +++ +R  E A L+ ++
Sbjct: 180 FYTDQDPAFRITEIIR--EQAILHTRE 204


>gi|149923267|ref|ZP_01911677.1| GTP-binding protein [Plesiocystis pacifica SIR-1]
 gi|149815864|gb|EDM75384.1| GTP-binding protein [Plesiocystis pacifica SIR-1]
          Length = 360

 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 86/225 (38%), Gaps = 38/225 (16%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  R+G+ + + G  N GKS+L NAL  +++A+ T +P TTR+ +        +   + D
Sbjct: 26  QAFRSGF-VALCGRPNVGKSTLLNALLGEELAVATALPQTTRERMLGIWTSPRFQAVLVD 84

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----------------------NSK 311
           T GI +    + K  ++       + D+IL+L E+                       + 
Sbjct: 85  TPGIHKPKSALNKYMVEEAVRGARDVDVILMLAEVPRVPRGKDGHALIQEWEPGPGAKAA 144

Query: 312 KEISFPKNIDFIFIGTKSDLY--------------STYTEEYDHLISSFTGEGLEELINK 357
            E+  P     + + TK DL               + +       +S+  G GLE L  +
Sbjct: 145 VELLAPLGKPMVLVLTKCDLLGERDWLLPIIQRWQAIHAFAGVVPVSAVQGRGLEALREE 204

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           ++  L            S +   +H S+ +R  E+     ++   
Sbjct: 205 VEGALPEGPAYYADDQLSDRSMRWHASELIRA-ELFERLGQELPY 248


>gi|33862628|ref|NP_894188.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9313]
 gi|33634544|emb|CAE20530.1| GTP-binding protein ERA homolog [Prochlorococcus marinus str. MIT
           9313]
          Length = 316

 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 79/198 (39%), Gaps = 24/198 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ + ++G  N GKS+L N L  + VAI + +  TTR+ L   +      + + D
Sbjct: 11  EGYRSGF-VALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAIVTTSEAQMVLVD 69

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFI 325
           T GI +   ++ +  ++     +   DL+LLL E             E+   +++  +  
Sbjct: 70  TPGIHKPHHLLGERLVQSARAAIGEVDLVLLLLEGCESPGCGDAFIVELLRQQDLPVLVA 129

Query: 326 GTKSDLYSTYTEEYD---------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
             K D  +   ++                    S+ +GEG   L+  +   L    +  P
Sbjct: 130 LNKWDRVAEQQQDPAEEAYRQLLADSAWPLIRCSAISGEGCNGLVEALVGHLPLGPQLYP 189

Query: 371 FSIPSHKRHLYHLSQTVR 388
             +   +     L++ +R
Sbjct: 190 AEMVCDQPERVLLAELIR 207


>gi|163802959|ref|ZP_02196846.1| GTP-binding protein Era [Vibrio sp. AND4]
 gi|159173249|gb|EDP58077.1| GTP-binding protein Era [Vibrio sp. AND4]
          Length = 320

 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 29  IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 88

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L+  L +     +  E+   K    N   +    K D   
Sbjct: 89  KRAINRLMNRAANSSLSDVNLVFFLVDGTHWTNDDEMVLTKLQKSNFPVVLCVNKVDNVQ 148

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H++              S+  G+ +E L   ++  L       P    + +  
Sbjct: 149 DRNEVMQHMMEMSKRMDFVDVVPISAKHGKNIEVLRKHVRDHLPEATHHFPEEYVTDRSQ 208

Query: 380 LYHLSQTVR 388
            +  S+ VR
Sbjct: 209 RFMASEIVR 217


>gi|81428488|ref|YP_395488.1| putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K]
 gi|78610130|emb|CAI55179.1| Putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K]
          Length = 300

 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 79/204 (38%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + I+G  N GKS+  N +  + +AI++    TTR+ +      +   +   DT 
Sbjct: 5   YRSGF-VAIVGRPNVGKSTFMNRMIGEKIAIMSSKAQTTRNKIQGIYTDDNAQIVFVDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--IDFIFIGT 327
           GI +  + +++   +         D IL +     KK       +   KN       +  
Sbjct: 64  GIHKPHNELDEYMDQAALSTFNEVDAILFMISGVDKKGPGDQYIMDQLKNVKKPVYLVVN 123

Query: 328 KSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D         +   Y  E D    + IS+  G  + E++ +++  L    +  P    
Sbjct: 124 KIDAIHPDDLLPMIEQYRHELDFKAVYPISALEGNNVPEMLKELELTLPEGPQYYPEDQL 183

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           +     + + + +R   +   +E+
Sbjct: 184 TDHPEYFVVGELIREKILELTHEE 207


>gi|303327684|ref|ZP_07358124.1| GTP-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862045|gb|EFL84979.1| GTP-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 416

 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 23/173 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  NAGKSSL NAL+ + V+IV+D PGTT D +   L++     V   DTAG+ 
Sbjct: 10  LHIALFGRRNAGKSSLLNALSGQPVSIVSDTPGTTTDPVEKTLEMAPLGPVVFLDTAGLD 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN-------SKKEISFPKNIDFIFIGTKSDL 331
           +  ++      +R+   +   D+ LL+ +         +         I F+ +  K+D 
Sbjct: 70  DDGELGRLRA-ERSLEIMRRTDVALLVTDGRIWGRTEAAAAARLRSLAIPFVVVRNKADA 128

Query: 332 YSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            S   E  D                 S+ +G GL+E+   I+ +      + P
Sbjct: 129 DSGAKETTDAPDRPEGLDAAVPVIRASARSGLGLDEIRAAIERVAPESALRQP 181


>gi|332358725|gb|EGJ36548.1| GTP-binding protein Era [Streptococcus sanguinis SK355]
          Length = 299

 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L +   +       +    IS+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRQQMDFKEIVPISALQGNNVSRLVDILSENLEEGFQYFPEDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|113971588|ref|YP_735381.1| small GTP-binding protein [Shewanella sp. MR-4]
 gi|113886272|gb|ABI40324.1| small GTP-binding protein [Shewanella sp. MR-4]
          Length = 412

 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 18/169 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
           Y I ++G  NAGKSSL N +A + ++IV+DI GTT D +T   +L+    V   DTAGI 
Sbjct: 22  YHIALVGRRNAGKSSLLNMIAGQQISIVSDIKGTTTDAVTKAYELQPLGPVTFYDTAGID 81

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS--KKEISFPKN-----IDFIFIGTKSDL 331
           +  ++     +K T   +  +D+ LL+ +       +I+         +  + +  K+D+
Sbjct: 82  DDGELGAMR-VKATRKVLFRSDMALLVVDEQGLYPSDIALVNEIQQMRMPILVVFNKADI 140

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
            +   E+              S+ TG   + L   I  +   ++K+ P 
Sbjct: 141 CTPKAEDIAFCQQQSLPFIVVSATTGLAAKMLKQLIIDLAPAEYKQEPM 189


>gi|220903650|ref|YP_002478962.1| GTP-binding protein Era [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254783652|sp|B8J3P9|ERA_DESDA RecName: Full=GTPase Era
 gi|219867949|gb|ACL48284.1| GTP-binding protein Era [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 307

 Score = 87.6 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 28/196 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + ++G  NAGKS+L NAL  + V IVT  P TTR+ +   L  +       DT G+ + 
Sbjct: 10  WVALMGPPNAGKSTLLNALLGQKVTIVTPKPQTTRNQIVGILTDDDAQTIFMDTPGLTQV 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------------SKKEISFPKNIDFIFIG 326
              + K  I+  +  +  AD+I+ + + +                 +    +    I + 
Sbjct: 70  RGRLSKTMIQAVWQSLNQADIIMPVLDAHLYIRHPEFLDRDLAPVAQALASEERPMIVVV 129

Query: 327 TKSDLY--------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            K DL+                +       IS+   +GL +L+  I+  L     + P  
Sbjct: 130 NKVDLFGDKSRMLPLLTRLHEMWPRADIFPISALHKDGLADLVELIRKKLPKGQAQFPED 189

Query: 373 IPSHKRHLYHLSQTVR 388
             S     +  ++ VR
Sbjct: 190 QISTAPLRFMTAEIVR 205


>gi|258647984|ref|ZP_05735453.1| GTP-binding protein Era [Prevotella tannerae ATCC 51259]
 gi|260851825|gb|EEX71694.1| GTP-binding protein Era [Prevotella tannerae ATCC 51259]
          Length = 293

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 75/175 (42%), Gaps = 21/175 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G+ N GKS+L N    + ++I T    TTR  +   ++     +  SDT 
Sbjct: 1   MKSGF-VNIVGNPNVGKSTLMNLFVGERISIATFKAQTTRHRILGIVNKPDAQIIFSDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTK 328
           G+ + +  ++K  +  +   + +AD++L + ++   +E +          N+  + +  K
Sbjct: 60  GVLKPNYKMQKAMLTFSESALTDADILLYVTDVIEDQEKNKEFLEKVAVANVPVLVLINK 119

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            DL S                +     +S+      + ++ +I+++L        
Sbjct: 120 IDLSSQKEVEQLIKQWQERLPKAEIIPLSAKAKFNTDTVLQRIEALLPEGPAYFE 174


>gi|254670527|emb|CBA06322.1| GTP-binding protein Era [Neisseria meningitidis alpha153]
          Length = 313

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 24/210 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +  +  R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 8   DIETFLAGERAADGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 66

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLK------EINSKKEI 314
              +       DT G +        + + +     +   D ++ +       + +     
Sbjct: 67  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDADRVVLK 126

Query: 315 SFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELINKI 358
             PK+   I +  K D                + + +       +S+  G  +  L+  +
Sbjct: 127 QLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELL 186

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           K  L       P  + + K   +   + VR
Sbjct: 187 KPYLPESVPMYPEDMVTDKSARFLAMEIVR 216


>gi|300770940|ref|ZP_07080817.1| GTP-binding protein Era [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762213|gb|EFK59032.1| GTP-binding protein Era [Sphingobacterium spiritivorum ATCC 33861]
          Length = 292

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 19/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L NAL  + ++I+T    TTR  +   ++ E + +  SDT G+ + +
Sbjct: 8   VSIIGKPNAGKSTLMNALVGEKMSIITPKAQTTRHRIMGIVNDENHQIVFSDTPGVIKPN 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDL---- 331
             +++  +      + +AD+IL + +IN K       E     +     +  K D     
Sbjct: 68  YSLQESMMNFVQGSLIDADIILFVTDINEKYDENDVIEKLRKTSSPVAVLINKIDKSTEE 127

Query: 332 ---------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                          +    IS+     +  +++ IK  L        
Sbjct: 128 DVKAKIEFWKEKLNPDTIFAISALHQHNVVAIMDYIKEKLPEHAPYYE 175


>gi|269213653|ref|ZP_05982481.2| GTP-binding protein Era [Neisseria cinerea ATCC 14685]
 gi|269145766|gb|EEZ72184.1| GTP-binding protein Era [Neisseria cinerea ATCC 14685]
          Length = 311

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 24/210 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +  +  R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 6   DIETFLAGERATDGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNPVTGI 64

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLK------EINSKKEI 314
              +       DT G +        + + +     +   D ++ +       + +     
Sbjct: 65  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDADRVVLK 124

Query: 315 SFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELINKI 358
             PK+   I +  K D                + + +       +S+  G  +  L+  I
Sbjct: 125 QLPKHTPVILVVNKIDKDKAKDRYALEAFVVQVRAEFEFAAAEAVSAKHGLRIANLLELI 184

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           K  L       P  + + K   +   + VR
Sbjct: 185 KPYLPESVPMYPEDMVTDKSARFLAMEIVR 214


>gi|221505263|gb|EEE30917.1| GTP-binding protein engA, putative [Toxoplasma gondii VEG]
          Length = 1105

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 33/192 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N GKS+L N+L +++  +V + PGTT D +      +G+  ++ DTAG+  
Sbjct: 791 IHVAIIGRPNVGKSTLVNSLLQEERMVVDNRPGTTTDAVGTLWKFQGHPFRLIDTAGVTR 850

Query: 280 TD-----DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334
                  D++ + G+ +T   + N+ + +L  + +  ++   P               S+
Sbjct: 851 GWKMRHTDLLLEAGL-QTLRNIRNSQVCILCIDASLARDTGQP--------------ISS 895

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
           +     HL S   G  L   + K               +P ++R      + +  L+   
Sbjct: 896 HELALAHLASEKEGRCLAVCVTKW------------DLVPENEREKLR-REILERLQSGL 942

Query: 395 LNEKDCGLDIIA 406
            + K C +  +A
Sbjct: 943 GHLKGCPVVFVA 954



 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 11/168 (6%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI 207
             +    S     WI   + + S+  A   F+         ++ + +      + +S   
Sbjct: 180 RQLGNSASRPLR-WISSASRLLSYNAAG-PFAVHPLPLFSLTRYLSSSRRRSSDALSRIH 237

Query: 208 SQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            + +    +  +  K+V++G  N GKSSLFN L    + IV+   GT+RD         G
Sbjct: 238 PKLQRAPDLSVHPLKVVLVGRPNVGKSSLFNRL----ITIVSPQAGTSRDRKEARAVFGG 293

Query: 267 YLVKISDTAGIRETDDIVEKE----GIKRTFLEVENADLILLLKEINS 310
             + + DT G+ +T+     E      K+    +++AD +L L +   
Sbjct: 294 LQLLLVDTGGLEDTETTEACELLINMRKQVRFALKDADCVLFLIDATE 341


>gi|115351065|ref|YP_772904.1| GTP-binding protein Era [Burkholderia ambifaria AMMD]
 gi|115281053|gb|ABI86570.1| GTP-binding protein Era [Burkholderia ambifaria AMMD]
          Length = 299

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T     +       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D+IL + E       + K     P  +  + I  K D  + 
Sbjct: 74  STALNRSLNRAVTSTLTSVDVILFVIEAGRFGPDDQKVLDLIPPGMPTLLIANKIDRVTD 133

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               +  +               S+   E ++ L++ IK  L            + +   
Sbjct: 134 KATLFPFMQQMSGLREFTELVPLSAQRPEDIKRLLDTIKPYLPEGEPIYGEDELTDRSSR 193

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 194 FLAAEILR 201


>gi|300857358|ref|YP_003782342.1| small GTP-binding protein domain-containing protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300437473|gb|ADK17240.1| Small GTP-binding protein domain protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 411

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 20/160 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
            I + G  NAGKSS+ NAL  +D+AIV+D+ GTT D +   +++       I DTAG+ +
Sbjct: 13  HIALFGKRNAGKSSIINALTGQDIAIVSDVRGTTTDPVYKSMEILPIGPCVIIDTAGLDD 72

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIG--TKSDL 331
             ++ E    ++T   +   D+ +++ +         +  I+  KN     IG   K D 
Sbjct: 73  EGELGELRK-EKTLSVLNKTDISIIVIDSTVGITDYDESIINQIKNKKIPLIGVLNKIDA 131

Query: 332 YSTYTEEYDHLI----------SSFTGEGLEELINKIKSI 361
                 + +H+           S+   +G+ EL N+I + 
Sbjct: 132 ADIKDLDVEHMKKELKIPIVKVSALKRKGILELKNQIIAA 171


>gi|294011701|ref|YP_003545161.1| GTP-binding protein Era [Sphingobium japonicum UT26S]
 gi|292675031|dbj|BAI96549.1| GTP-binding protein Era [Sphingobium japonicum UT26S]
          Length = 302

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 67/188 (35%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKS+L NAL  + VAI +    TTR  +          + + DT GI +  
Sbjct: 13  IAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQMVLVDTPGIFQPK 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSD--- 330
             +++  ++  +   + ADLI L+ +  +               +      I  K D   
Sbjct: 73  RRLDRAMVQAAWGGAQGADLIALVVDGKAGLGAKMEPIVGALAARPEKKWLILNKVDIAI 132

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     LY          +S+ TG+GL EL       +       P    S     
Sbjct: 133 KEKLLVHTQRLYEQLDIAETFFVSAATGDGLPELKTAFARAMPEGPWHFPEDQVSDATDR 192

Query: 381 YHLSQTVR 388
              ++  R
Sbjct: 193 MLAAEITR 200


>gi|193216878|ref|YP_002000120.1| GTP-binding protein Era [Mycoplasma arthritidis 158L3-1]
 gi|193002201|gb|ACF07416.1| GTP-binding protein Era [Mycoplasma arthritidis 158L3-1]
          Length = 294

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L   ++AIV+    TTRD +    + + Y +   DT GI + +
Sbjct: 8   VALIGRPNTGKSTLMNHLISYELAIVSKHAQTTRDDIKGFYNDDEYQIIFIDTPGIHKGE 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS------------------KKEISFPKNIDFI 323
            ++ K   KR    +++ DL+L L   N                   K +++    +D +
Sbjct: 68  SLLSKRLNKRAQDALKDVDLVLFLSPANEVVGKGDEFIIKTIEDAGVKNKLAIISKVDLV 127

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRH 379
              TK D  + Y ++         G+G +    +L+  IK+         P    S    
Sbjct: 128 DDKTKLDKKAGYLKKMGFASVFGVGKGHDQSYRDLLEIIKTYAKEDEAMYPEDYISDVSM 187

Query: 380 LYHLSQTVR 388
            +   + +R
Sbjct: 188 RFIAKEIIR 196


>gi|288958024|ref|YP_003448365.1| GTP-binding protein [Azospirillum sp. B510]
 gi|288910332|dbj|BAI71821.1| GTP-binding protein [Azospirillum sp. B510]
          Length = 301

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 81/204 (39%), Gaps = 23/204 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ I ++G  NAGKS+L NA+    V+IV+    TTR  +          +   DT G
Sbjct: 6   RCGF-IALVGAPNAGKSTLLNAMIGSKVSIVSPKVQTTRTRVLGITIQGDAQMIFVDTPG 64

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF---------PKNIDFIFIGT 327
           I +    +++  +   +   E+AD+I +L +++ +               +  + I I  
Sbjct: 65  IFKPKRRLDRAMVAAAWQGAEDADVIGVLYDVSRRSIDEDTRSIVARLKEQGREAILILN 124

Query: 328 KSDLY---------STYTEEY----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL            + +E       ++S+FT +G+ +L   +   L       P    
Sbjct: 125 KIDLVKRDVLLGIADAFRQEGIFSDIFMVSAFTEDGVGDLKQFLADRLPEGPWHFPEDQI 184

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           S        ++  R      L+++
Sbjct: 185 SDMPMRLLAAEITREKLFLQLHQE 208


>gi|126439282|ref|YP_001059799.1| GTP-binding protein Era [Burkholderia pseudomallei 668]
 gi|126218775|gb|ABN82281.1| GTP-binding protein Era [Burkholderia pseudomallei 668]
          Length = 299

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    L+       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLDDAQYIFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P     + +  K D  S 
Sbjct: 74  STALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPGTPTLLVANKLDRVSD 133

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               Y                  S+   E ++ L+N IK  L            + +   
Sbjct: 134 KDTLYPFFQKMGGLREFAEIVPLSAKHPEDIQRLMNTIKPYLPEGDAIYGEDDLTDRSSR 193

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 194 FLAAEILR 201


>gi|254519548|ref|ZP_05131604.1| GTP-binding protein [Clostridium sp. 7_2_43FAA]
 gi|226913297|gb|EEH98498.1| GTP-binding protein [Clostridium sp. 7_2_43FAA]
          Length = 402

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 17/149 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           N   I + G +NAGKSSL N    ++V++V++  GTT D +   ++L     V I DTAG
Sbjct: 8   NRKHIAVFGKTNAGKSSLINRFLGQEVSLVSEKEGTTTDPVQKAMELIPVGPVLIIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
             +  ++ E   +KRT   ++  D+ + L +IN      F +        NI ++ +  K
Sbjct: 68  FGDKSELGEVR-VKRTLDILKRTDVAIYLFDINDIDLEEFKEAKRNFKKYNIPYVVVINK 126

Query: 329 SD-LYSTYTEEYDHLI------SSFTGEG 350
           SD +     EE           SS TGEG
Sbjct: 127 SDSVNENILEELQIKFKDSIFLSSNTGEG 155


>gi|221483987|gb|EEE22291.1| GTP-binding protein enga, putative [Toxoplasma gondii GT1]
          Length = 1125

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 33/192 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N GKS+L N+L +++  +V + PGTT D +      +G+  ++ DTAG+  
Sbjct: 811 IHVAIIGRPNVGKSTLVNSLLQEERMVVDNRPGTTTDAVGTLWRFQGHPFRLIDTAGVTR 870

Query: 280 TD-----DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334
                  D++ + G+ +T   + N+ + +L  + +  ++   P               S+
Sbjct: 871 GWKMRHTDLLLEAGL-QTLRNIRNSQVCILCIDASLARDTGQP--------------ISS 915

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
           +     HL S   G  L   + K               +P ++R      + +  L+   
Sbjct: 916 HELALAHLASEKEGRCLAVCVTKW------------DLVPENEREKLR-REILERLQSGL 962

Query: 395 LNEKDCGLDIIA 406
            + K C +  +A
Sbjct: 963 GHLKGCPVVFVA 974



 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 23/184 (12%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI 207
             +    S     WI   + + S+      F+         ++ + +      + +S   
Sbjct: 180 RQLGNSASRPLR-WISSASRLLSYNAVG-PFAVHPLPLFSLTRYLSSSRRRSSDALSRIH 237

Query: 208 SQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV----------------AIVTDI 250
            + +    +  +  K+V++G  N GKSSLFN L                     AIV+  
Sbjct: 238 PKLQRAPDLSVHPLKVVLVGRPNVGKSSLFNRLISGTRGNSTSSPFAPLKRLQQAIVSPQ 297

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE----GIKRTFLEVENADLILLLK 306
            GT+RD         G  + + DT G+ +T+     E      K+    +++AD +L L 
Sbjct: 298 AGTSRDRKEARAVFGGLQLLLVDTGGLEDTETTEACELLINMRKQVRFALKDADCVLFLI 357

Query: 307 EINS 310
           +   
Sbjct: 358 DATE 361


>gi|319939220|ref|ZP_08013583.1| GTP-binding protein Era [Streptococcus anginosus 1_2_62CV]
 gi|319811616|gb|EFW07892.1| GTP-binding protein Era [Streptococcus anginosus 1_2_62CV]
          Length = 299

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDQEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDL-- 331
             +    ++  +  +   D +L +   +  +        E      +  + +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVSADENRGKGDDMIMERLKVAKVPVVLVINKIDKVH 127

Query: 332 -------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     Y ++ D      IS+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLSQIDDYRKQMDFKEVVPISALQGNNVSHLVDILSENLEEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|257063791|ref|YP_003143463.1| GTP-binding proten HflX [Slackia heliotrinireducens DSM 20476]
 gi|256791444|gb|ACV22114.1| GTP-binding proten HflX [Slackia heliotrinireducens DSM 20476]
          Length = 433

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 110/298 (36%), Gaps = 33/298 (11%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           E  +Q RL+       L          L   R        F E E       + V   I 
Sbjct: 132 EGRLQVRLAQNQY---LLPRLRGMWAHLASNRMGGGVGSRFGEGESQLEVDRRMVRKRIT 188

Query: 198 FLKNDISSH--ISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            ++ ++     +   +      +G +K+   G++NAGKSSL N L   +V +  D    T
Sbjct: 189 SIRRELEQVAQMRTIQRAARYDSGIFKVAEAGYTNAGKSSLLNRLTNAEV-LSYDKLFAT 247

Query: 255 RDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D  T  L L EG  V I+DT G  +       E    T  E+  ADLI+ + + +S + 
Sbjct: 248 LDSTTRKLVLPEGREVTITDTVGFIQKLPTTLVEAFNSTLDEIRGADLIMHVVDASSNER 307

Query: 313 -----------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEEL 354
                      E    ++I  + +  K DL                 L+S+ TGEG++ L
Sbjct: 308 DLQMNAVGDTLEQIGAQDIPRLVVFNKIDLVDEGDRAILASRYPMAILVSAETGEGIDGL 367

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQ------TVRYLEMASLNEKDCGLDIIA 406
           I+ +   ++ + + +   +P  K  +  L           Y E  +        D+IA
Sbjct: 368 IDALARAVAAQEELMDVLVPYSKGSVVSLVHERCTVLAESYGEDGTRLTLRAPRDLIA 425


>gi|85712959|ref|ZP_01043998.1| GTPase Era [Idiomarina baltica OS145]
 gi|85693197|gb|EAQ31156.1| GTPase Era [Idiomarina baltica OS145]
          Length = 315

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 79/201 (39%), Gaps = 23/201 (11%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           G++ E  + G+ + I+G  N GKS++ N +  + V+I +  P TTR  +        Y  
Sbjct: 15  GQIDENKQCGF-VAIVGRPNVGKSTMLNRILGQKVSITSSKPQTTRHRILGVDTEGDYQT 73

Query: 270 KISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NID 321
              DT G+  E    + +   +     +++ DLIL + E    N    +   K       
Sbjct: 74  VYVDTPGMHLEEPRAINRVMNQTASSALKDVDLILFVVENTRWNDDDVMVLEKLKKTETP 133

Query: 322 FIFIGTKSDLYSTYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFK 367
            + +  K D      +   H               +S+ TG+ LE L + +K  L + + 
Sbjct: 134 IVLVVNKVDQIKDKNKLLPHLQWLSQQLSVKEIIPVSAKTGDNLEPLRDIVKGFLQSGYH 193

Query: 368 KLPFSIPSHKRHLYHLSQTVR 388
             P    + +   +  ++ +R
Sbjct: 194 FYPADYVTDRSVRFMTAEIIR 214


>gi|322419360|ref|YP_004198583.1| small GTP-binding protein [Geobacter sp. M18]
 gi|320125747|gb|ADW13307.1| small GTP-binding protein [Geobacter sp. M18]
          Length = 408

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 18/171 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  N GKSSL NAL ++ ++IV+D+ GTT D +   ++L     V   DTAGI 
Sbjct: 10  LHIGLFGRRNVGKSSLLNALTRQTISIVSDVAGTTTDPVEKPMELLPIGPVLFIDTAGID 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL 331
           +   + E   +++T   ++  D+ +++           +       + I  + +  K+DL
Sbjct: 70  DVGALGELR-VQKTRQVLDRTDVGIVVALAGDWGGFEEAILGELLERKIPALVVFNKTDL 128

Query: 332 YSTYTEEYDHLISSFT---------GEGLEELINKIKSILSNKFKKLPFSI 373
                   +   +            G G+ EL   +  +   +F   P  +
Sbjct: 129 APVSARHLERFAADAIPCLQTAASLGAGVLELREALIGLAPEEFINAPAIL 179


>gi|117919157|ref|YP_868349.1| small GTP-binding protein [Shewanella sp. ANA-3]
 gi|117611489|gb|ABK46943.1| small GTP-binding protein [Shewanella sp. ANA-3]
          Length = 412

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
           Y I ++G  NAGKSSL N +A + ++IV+DI GTT D +    +L+    V   DTAGI 
Sbjct: 22  YHIALVGRRNAGKSSLLNMIAGQQISIVSDIKGTTTDAVAKAYELQPLGPVTFYDTAGID 81

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS--KKEISFPKN-----IDFIFIGTKSDL 331
           +  ++     +K T   +  +D+ LL+ +       +I+         +  + +  K+D+
Sbjct: 82  DDGELGAMR-VKATRKVLFRSDMALLVVDEQGLYPSDIALVNEIQQMRMPILVVFNKADI 140

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
            +   E               S+ TG   + L  +I  +   ++K+ P 
Sbjct: 141 CTPKAENIAFCQQQSLPFIVVSATTGLATKMLKQQIIDLAPAEYKQEPL 189


>gi|300704606|ref|YP_003746209.1| 30S ribosomal subunit-binding GTPase [Ralstonia solanacearum
           CFBP2957]
 gi|299072270|emb|CBJ43603.1| 30S ribosomal subunit_binding GTPase [Ralstonia solanacearum
           CFBP2957]
          Length = 290

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 7/123 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + V+I +    TTR  +T     +       DT G +   
Sbjct: 2   VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPGFQTRH 61

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D +L + E       ++K     P+    I I  K D    
Sbjct: 62  ATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVLSLLPRETPVILIVNKVDRLDA 121

Query: 335 YTE 337
           YT 
Sbjct: 122 YTR 124


>gi|291296458|ref|YP_003507856.1| GTP-binding protein Era [Meiothermus ruber DSM 1279]
 gi|290471417|gb|ADD28836.1| GTP-binding protein Era [Meiothermus ruber DSM 1279]
          Length = 313

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 77/215 (35%), Gaps = 27/215 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +    +A ++  P TTR  +          +   DT G  E  
Sbjct: 20  VAVVGKPNVGKSTLVNTMLGVKIAPISPKPQTTRKRVRGIHTEGNRQIVFVDTPGWHEAS 79

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNIDFIFIGTKSDL 331
           D + +  I++    +   +L+L L ++           ++        +  I +G K+D 
Sbjct: 80  DALSEYMIRQITEALAEVNLVLWLVDLRHPPTHEDELVARALRPMKDQVPIILVGNKADA 139

Query: 332 YS-------TYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS-HKRH 379
                     Y E        +IS+      + L ++I S+L       P       +  
Sbjct: 140 ARYPEAALQAYAELLPGLETRMISAQNERDAKALRDEILSLLPEGPFFFPEDYAKGDQTP 199

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDII----AENLR 410
               ++ VR   M  L E +    I     A  LR
Sbjct: 200 EEWAAEIVREEAMKRLKE-EIPYSIATKTEAFELR 233


>gi|157151336|ref|YP_001450014.1| GTP-binding protein Era [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|3334174|sp|O24756|ERA_STRGC RecName: Full=GTPase Era
 gi|2627217|dbj|BAA23582.1| GTP-binding protein [Streptococcus gordonii]
 gi|157076130|gb|ABV10813.1| GTP-binding protein Era [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 299

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L +   +       +    IS+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRQQMDFKEIVPISALQGNNVSRLVDILSENLEEGFQYFPEDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|331703462|ref|YP_004400149.1| GTP binding protein Era [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328802017|emb|CBW54171.1| GTP binding protein Era homolog [Mycoplasma mycoides subsp. capri
           LC str. 95010]
          Length = 301

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 95/215 (44%), Gaps = 25/215 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + I+G  N GKS+L N L  + ++IVT+ P TTR+ +   L  +  Y +   DT G+  +
Sbjct: 9   VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDQYQIVFIDTPGVHTS 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFI--FIGTKSD-- 330
              ++K          ++ D+IL L   +          +   KN+D     + TK+D  
Sbjct: 69  KKQLDKFLNTSALKSTKDVDVILFLAPSDEAIGKNDLFLLKQIKNLDVFKILVITKADNV 128

Query: 331 ----------LYSTYTEEYD--HLISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHK 377
                      +S++ +++D   + SS     +E+L+  I + L  N ++     I + +
Sbjct: 129 TKEQLILKANEWSSFQDQFDEIIITSSIINLNIEKLLELIVNNLSDNDYQFYDDDILTDQ 188

Query: 378 RHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRL 411
              + + + +R  + + +  E    + ++ E+L  
Sbjct: 189 SDRFMIKEIIRENILLKTGQEVPHSVAVLVEHLEQ 223


>gi|261884860|ref|ZP_06008899.1| GTP-binding protein EngA [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 153

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 9/130 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI+++G  N GKSSLFN LAK+ +AI +D+ GTTRD    ++ ++     + D+ G+ ++
Sbjct: 3   KIILVGRPNVGKSSLFNRLAKQRIAITSDVSGTTRDTNKAEIFIDDKNCILIDSGGLDDS 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLY 332
           +++ +   I  T  E +NAD+I+ + +  +  +    +        N     +  K D  
Sbjct: 63  NELFKNVKIN-TLNEAKNADIIVFMVDGKNFPDEIDKRFFYELSNLNKPIALVVNKVDSK 121

Query: 333 STYTEEYDHL 342
                 ++  
Sbjct: 122 KDEERSWEFN 131


>gi|119944413|ref|YP_942093.1| GTP-binding protein Era [Psychromonas ingrahamii 37]
 gi|119863017|gb|ABM02494.1| GTP-binding protein Era [Psychromonas ingrahamii 37]
          Length = 300

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L NAL  + V+I +    TTR  +        Y     DT G+  E 
Sbjct: 8   VAIVGRPNVGKSTLINALLGQKVSITSRKAQTTRHRILGIDTEGDYQTIFVDTPGLHIEE 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     + + ++++ + E    N   ++   K        +    K D   
Sbjct: 68  KRAINRLMNRAASSSINDVEMVIFVVEGTHWNEDDDMVLSKFKYLKCPVVLAVNKIDNVE 127

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L   Y  ++   +S+  G+ +E++    K +L       P    + +  
Sbjct: 128 DKELLLPHLEALGKRYNFKHILPMSAKKGDNIEKIRTWAKEVLPESEHYFPEDYITDRSS 187

Query: 380 LYHLSQTVR 388
            +  S+ VR
Sbjct: 188 RFMASEMVR 196


>gi|330997749|ref|ZP_08321588.1| ribosome biogenesis GTPase Era [Paraprevotella xylaniphila YIT
           11841]
 gi|329569848|gb|EGG51606.1| ribosome biogenesis GTPase Era [Paraprevotella xylaniphila YIT
           11841]
          Length = 294

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 96/216 (44%), Gaps = 21/216 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   L+ E   +  SDT G+ + +
Sbjct: 8   VNIVGNPNVGKSTLMNLLVGERISIATFKAQTTRHRIMGILNTEDMQICFSDTPGVLKPN 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDL--- 331
             +++  +  +   +++AD++L + ++     K      K    ++  + +  K D+   
Sbjct: 68  YKLQESMLNFSESALQDADVLLYVTDMVETPDKNGDFLEKVSKMDVPVLVLINKIDVSNQ 127

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                     ++   +     IS+     ++ ++N+IK +L +          + K   +
Sbjct: 128 QELTSKVEAWHAVLPKAEIIPISALCKFNIDTVLNRIKDLLPDSPPYFGKDQWTDKPARF 187

Query: 382 HLSQTVRY-LEMASLNEKDCGLDIIAENLRLASVSL 416
            +++ +R  + +    E    ++++ E  + A+ S+
Sbjct: 188 FVTEIIREKILLYYDKEIPYSVEVVVERFKEAAKSI 223


>gi|223985698|ref|ZP_03635745.1| hypothetical protein HOLDEFILI_03051 [Holdemania filiformis DSM
           12042]
 gi|223962309|gb|EEF66774.1| hypothetical protein HOLDEFILI_03051 [Holdemania filiformis DSM
           12042]
          Length = 298

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 23/223 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + ++G  NAGKS+L NAL ++ VAI++  P TTR+ +          +   DT 
Sbjct: 1   MKSGF-VALIGRPNAGKSTLLNALVQQKVAIISPKPQTTRNSIRAIRTDADSQIIFVDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNI--DFIFIGT 327
           GI +    +  +  K  +      DLI  L + +       +  ++  + +      I  
Sbjct: 60  GIHKPKHELGTQMNKEAYSAASGVDLIYYLVDGSVPFGSGDEFVLNTLRQMHLPVYLILN 119

Query: 328 KSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL                   +    IS+ T   L++LI   K+ L++  +  P    
Sbjct: 120 KIDLLEKEQLIDLLLAWQQRMDFKEIIPISAKTQNNLDQLIEVTKNDLTDGVQYYPADQV 179

Query: 375 SHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRLASVSL 416
                 + +++ +R  + + +  E    + ++ E +R     L
Sbjct: 180 CDYPEQFIMAEIIREKVLLLTEEEVPHSVAVVIERIRKNREHL 222


>gi|146319051|ref|YP_001198763.1| GTP-binding protein Era [Streptococcus suis 05ZYH33]
 gi|146321257|ref|YP_001200968.1| GTP-binding protein Era [Streptococcus suis 98HAH33]
 gi|223932650|ref|ZP_03624649.1| GTP-binding protein Era [Streptococcus suis 89/1591]
 gi|253752114|ref|YP_003025255.1| GTP-binding protein Era homolog [Streptococcus suis SC84]
 gi|253753939|ref|YP_003027080.1| GTP-binding protein Era homolog [Streptococcus suis P1/7]
 gi|253755186|ref|YP_003028326.1| GTP-binding protein Era homolog [Streptococcus suis BM407]
 gi|330832408|ref|YP_004401233.1| GTP-binding protein Era [Streptococcus suis ST3]
 gi|189037678|sp|A4W2H9|ERA_STRS2 RecName: Full=GTPase Era
 gi|189037680|sp|A4VW74|ERA_STRSY RecName: Full=GTPase Era
 gi|145689857|gb|ABP90363.1| GTPase [Streptococcus suis 05ZYH33]
 gi|145692063|gb|ABP92568.1| GTPase [Streptococcus suis 98HAH33]
 gi|223898620|gb|EEF64982.1| GTP-binding protein Era [Streptococcus suis 89/1591]
 gi|251816403|emb|CAZ52034.1| GTP-binding protein Era homolog [Streptococcus suis SC84]
 gi|251817650|emb|CAZ55398.1| GTP-binding protein Era homolog [Streptococcus suis BM407]
 gi|251820185|emb|CAR46552.1| GTP-binding protein Era homolog [Streptococcus suis P1/7]
 gi|292558696|gb|ADE31697.1| Small GTP-binding protein Era [Streptococcus suis GZ1]
 gi|319758490|gb|ADV70432.1| GTP-binding protein Era [Streptococcus suis JS14]
 gi|329306631|gb|AEB81047.1| GTP-binding protein Era [Streptococcus suis ST3]
          Length = 299

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNYVMGQKIAIMSDKAQTTRNKIMGIYTTEEEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY- 332
             +    ++  +  +   D +L +   + K+        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMIMERLKQAKVPVILVVNKIDKVH 127

Query: 333 -STYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                E+ D             IS+  G  +  L+  +K  L   F+  P    +     
Sbjct: 128 PDQLLEQIDDFRQQMDFKEIVPISATQGNNVNRLMEILKENLDEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|226356852|ref|YP_002786592.1| GTP-binding protein Era [Deinococcus deserti VCD115]
 gi|259645942|sp|C1CXC1|ERA_DEIDV RecName: Full=GTPase Era
 gi|226318842|gb|ACO46838.1| putative GTP-binding protein era [Deinococcus deserti VCD115]
          Length = 307

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 84/248 (33%), Gaps = 44/248 (17%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G    +G+ + I+G  N GKS+L N+     VA  +  P TTR  +      + + +   
Sbjct: 10  GATTHSGF-VAIVGKPNVGKSTLLNSFLGTKVAPTSPRPQTTRRGVRGISTTDTHQIVFV 68

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNIDF 322
           DT G+ +  D + K         + + D+I+ + ++           +++    PK    
Sbjct: 69  DTPGLHKPKDALGKYMNHEVHSALADVDVIIWVVDLRHPPTDEDELVARQVRELPK--PL 126

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLE----------------ELINKIKSILSNKF 366
             +G K+D      E      +   G   E                 L  +I  IL    
Sbjct: 127 FLVGNKTDAAKYPDEAMKLYRAQLEGRSAETSEIMLSAQNNPLQVATLREQILDILPENP 186

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA--------ENLRLASVSLGK 418
              P    S +      ++ +R   M  L E +    +          E+       L +
Sbjct: 187 FFYPRGAASDQSRETWAAEIIREEAMKKLRE-ELPYAVATRVNRWTERED------GLQR 239

Query: 419 ITGCVDVE 426
           I G + VE
Sbjct: 240 IEGEIVVE 247


>gi|237836573|ref|XP_002367584.1| small GTP-binding protein, putative [Toxoplasma gondii ME49]
 gi|211965248|gb|EEB00444.1| small GTP-binding protein, putative [Toxoplasma gondii ME49]
          Length = 1105

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 33/192 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N GKS+L N+L +++  +V + PGTT D +      +G+  ++ DTAG+  
Sbjct: 791 IHVAIIGRPNVGKSTLVNSLLQEERMVVDNRPGTTTDAVGTLWRFQGHPFRLIDTAGVTR 850

Query: 280 TD-----DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334
                  D++ + G+ +T   + N+ + +L  + +  ++   P               S+
Sbjct: 851 GWKMRHTDLLLEAGL-QTLRNIRNSQVCILCIDASLARDTGQP--------------ISS 895

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
           +     HL S   G  L   + K               +P ++R      + +  L+   
Sbjct: 896 HELALAHLASEKEGRCLAVCVTKW------------DLVPENEREKLR-REILERLQSGL 942

Query: 395 LNEKDCGLDIIA 406
            + K C +  +A
Sbjct: 943 GHLKGCPVVFVA 954



 Score = 84.9 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 11/168 (6%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI 207
             +    S     WI   + + S+      F+     +   ++ + +      + +S   
Sbjct: 180 RQLGNSASRPLR-WISSASRLLSYNAVG-PFAVHPLPRFSLTRYLSSSRRRSSDALSRIH 237

Query: 208 SQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            + +    +  +  K+V++G  N GKSSLFN L    + IV+   GT+RD         G
Sbjct: 238 PKLQRAPDLSVHPLKVVLVGRPNVGKSSLFNRL----ITIVSPQAGTSRDRKEARAVFGG 293

Query: 267 YLVKISDTAGIRETDDIVEKE----GIKRTFLEVENADLILLLKEINS 310
             + + DT G+ +T+     E      K+    +++AD +L L +   
Sbjct: 294 LQLLLVDTGGLEDTETTEACELLINMRKQVRFALKDADCVLFLIDATE 341


>gi|299471247|emb|CBN79102.1| PEra, plastid Era GTPase [Ectocarpus siliculosus]
          Length = 382

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 86/239 (35%), Gaps = 27/239 (11%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              +  E  R GY + I+G  N GKS+L N +    ++IVT   GTTR  +T  +  + +
Sbjct: 62  RGSRAAEDFRTGY-VTIVGSPNVGKSTLMNNMIGDRLSIVTPKAGTTRHRITGIMTGDDF 120

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNI 320
            +   DT G+     ++ +  +      + +AD IL + ++   +       E       
Sbjct: 121 QMIYQDTPGVLTPAYMLHEGMMNFVQEAMGDADAILFVTDLFETEFANTQIFERMLAAGK 180

Query: 321 DFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             +    K DL  +  +  D            ++ +  +K +L    ++LP +       
Sbjct: 181 PIVVAVNKVDLLPSDGKSGDGPERPGLLAASTQKEVGSLKDVLGKWEERLPGATVLPISA 240

Query: 380 LYHLSQTVRYLEMASLNEKDCGL---D---------IIAENLRLASVSLGKITGCVDVE 426
           L  ++      E+     +   L   D           AE +R       +I G    E
Sbjct: 241 LEGINTVDLAGELKKHIPEGPPLFGTDVMSDKPQRFFAAEIIRE------QIFGSFSQE 293


>gi|237755977|ref|ZP_04584563.1| GTP-binding protein HflX [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691860|gb|EEP60882.1| GTP-binding protein HflX [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 372

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 108/264 (40%), Gaps = 24/264 (9%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           ++ T+    ++ +  +  +L  +YG    +L+ I   ++      +  +++  + K+ +N
Sbjct: 108 NARTKQAKLQVELAYLQHQLPRVYGGKGKELSRIGGGMKTKGAGEKLGEIKTRTIKDRIN 167

Query: 195 DILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
            I     +I     + +       N  K+ ++G++NAGKSSL   L K+DV I +D    
Sbjct: 168 KIKKQLKEIEKQREEQRKSREDNPNILKVSLVGYTNAGKSSLLKRLTKRDVFI-SDQLFA 226

Query: 254 TRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           T D  T  +        V I+DT G  E       +    T  E+E+AD+IL + +I+ K
Sbjct: 227 TLDTKTSLIYFPDIEKKVLITDTVGFVEDMPSEIMDAFMTTLKEIEDADVILHVIDISDK 286

Query: 312 KEISFP------------KNIDFIFIGTKS-------DLYSTYTEEYDHLISSFTGEGLE 352
             +               ++   I +  K        DL      E    IS+  G  ++
Sbjct: 287 NWMKKKTTVENVLKQLKLQDKPTITVFNKIDKVVPSKDLIEEDVMENTITISAEKGWNID 346

Query: 353 ELINKIKSILSNKFKKLPFSIPSH 376
           +L + +K     K +K    I  +
Sbjct: 347 KLFDILKKYAKQKEEKHGVCILQN 370


>gi|56459917|ref|YP_155198.1| GTPase Era [Idiomarina loihiensis L2TR]
 gi|56178927|gb|AAV81649.1| GTPase Era [Idiomarina loihiensis L2TR]
          Length = 305

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 81/200 (40%), Gaps = 23/200 (11%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +L E   +G+ + I+G  N GKS+L N L  + ++I ++ P TTR  +      +G    
Sbjct: 6   ELDENKHSGF-VAIVGRPNVGKSTLINRLLGQKISITSNKPQTTRHRILGVDTDDGCQAI 64

Query: 271 ISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLKEI-----NSKKEISFPKNIDFIF 324
             DT G+ + +       + +T    +++ DL+L + E      + K  +   +      
Sbjct: 65  YVDTPGMHKQEPRAINRVMNQTASSALKDVDLVLFVVENLKWLEDDKMVLEKIQRSKVPV 124

Query: 325 IG--TKSD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           +    K D              L   +  +    IS+  G+ ++EL   ++S L   +  
Sbjct: 125 VLLVNKVDQLKDKERLLPHLQWLNEQHKFDAILPISATHGDNVDELRKIVRSHLQPGYHY 184

Query: 369 LPFSIPSHKRHLYHLSQTVR 388
            P    + +   +  ++ VR
Sbjct: 185 YPEDYVTDRSVRFMAAEIVR 204


>gi|298206898|ref|YP_003715077.1| putative GTP-binding protein [Croceibacter atlanticus HTCC2559]
 gi|83849532|gb|EAP87400.1| putative GTP-binding protein [Croceibacter atlanticus HTCC2559]
          Length = 294

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 83/187 (44%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +  
Sbjct: 8   VNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGEDFQIVLSDTPGIIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLYST 334
             +++  +       E+AD+++ + EI     K E  F K     I  + +  K D    
Sbjct: 68  YQLQENMMDFVKSAFEDADVLIYMVEIGEQSLKDEAFFKKITNAEIPVLLLLNKIDTSDQ 127

Query: 335 YTEE-------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           +  E               + IS+  G  + E++N+I  ++       P    + K   +
Sbjct: 128 HQLEEQMQYWKEKVPTAEIYPISALEGFNVSEVLNRIIEVMPESPAFYPKDQLTDKPERF 187

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 188 FVNEIIR 194


>gi|73541938|ref|YP_296458.1| GTP-binding protein Era [Ralstonia eutropha JMP134]
 gi|72119351|gb|AAZ61614.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Ralstonia eutropha JMP134]
          Length = 311

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 68/200 (34%), Gaps = 24/200 (12%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             +  R G  + I+G  N GKS+L NAL  + ++I +    TTR  L      +      
Sbjct: 15  QAKAFRCG-TVAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRLVGIQTTDDAQYVF 73

Query: 272 SDTAGIRETDDIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIF 324
            DT G +          + R     + + DL+L + E       + K     PKN   + 
Sbjct: 74  VDTPGFQTRHASALNRSLNRAVTSTLSSVDLVLFVVEAGYYGADDEKVLALLPKNTPVLL 133

Query: 325 IGTKSDLYST----------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           +  K D  +                 +       +S+ T + +  L   I+  L      
Sbjct: 134 VTNKLDRVTDDRAGVMMPFLEKMGQLFPFREVVPMSAKTRDHIARLFEIIRPYLPEGEPM 193

Query: 369 LPFSIPSHKRHLYHLSQTVR 388
                 + +   +  S+ +R
Sbjct: 194 YDADAMTDRSERFLASEIIR 213


>gi|327403776|ref|YP_004344614.1| GTP-binding protein Era-like-protein [Fluviicola taffensis DSM
           16823]
 gi|327319284|gb|AEA43776.1| GTP-binding protein Era-like-protein [Fluviicola taffensis DSM
           16823]
          Length = 291

 Score = 87.2 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 7/124 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++IVT    TTR  +   ++ + + +  SDT G+    
Sbjct: 8   VNIVGSPNVGKSTLMNGLVGEKLSIVTSKAQTTRHRIHGLVNGDDHQIVFSDTPGVVNAS 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDLYST 334
             + +  +       ++AD++L + +++  +       E      I  + I  K DL   
Sbjct: 68  YKLHEAMMSYVESSFKDADILLFITDMSENEMNHKETLERIVKLKIPVLLILNKIDLADQ 127

Query: 335 YTEE 338
              E
Sbjct: 128 TKLE 131


>gi|319784503|ref|YP_004143979.1| GTP-binding protein Era [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170391|gb|ADV13929.1| GTP-binding protein Era [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 308

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 81/210 (38%), Gaps = 22/210 (10%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
                   +G+ + ++G  NAGKS+L N L    V+IVT    TTR ++      +   +
Sbjct: 8   ATTAAATHSGF-VALIGAPNAGKSTLVNQLVGAKVSIVTHKVQTTRAIVRGIATHDNAQI 66

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--ID 321
              DT GI +    ++   +   +   ++AD++LLL +       ++   +   K+    
Sbjct: 67  VFVDTPGIFKPKRRLDTAMVTTAWGGAKDADIVLLLIDAERGIRGDADAILERLKDVRQP 126

Query: 322 FIFIGTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
            + I  K D                    +   ++S+ TG G +++++ +   L    + 
Sbjct: 127 MVLILNKVDRVKHEALLALSAAANERVPFKRTFMVSALTGSGCKDVLDYLAESLPVGPRY 186

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            P    S        ++  R      L+++
Sbjct: 187 YPEDQISDLPMRQLAAEITREKLYLRLHQE 216


>gi|291515778|emb|CBK64988.1| GTP-binding protein Era [Alistipes shahii WAL 8301]
          Length = 293

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 21/192 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G+ N GKS+L NAL  + ++I+T    TTR  +   +  E + +  SDT G
Sbjct: 3   RSGF-VNIIGNPNVGKSTLMNALVGEKLSIITSKAQTTRHRIMGIVSGEDFQIVYSDTPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKS 329
           I +    +++  +K     + +AD+IL + +   + E S           I  + +  K 
Sbjct: 62  ILKPSYKLQESMMKFVTGALTDADVILYVTDTVEQSERSAEIVDSIRRSGIPTVVVINKI 121

Query: 330 DLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           DL +    E                  S+     +E L   I S+L       P    + 
Sbjct: 122 DLSTPEALEALVDKWQAEIPGAQVVPTSAKENFNIEGLFRTILSLLPEGPAFYPKDTLTD 181

Query: 377 KRHLYHLSQTVR 388
           K   +  S+ +R
Sbjct: 182 KTLRFFASEIIR 193


>gi|285019300|ref|YP_003377011.1| GTP-binding protein era [Xanthomonas albilineans GPE PC73]
 gi|283474518|emb|CBA17019.1| probable gtp-binding protein era [Xanthomonas albilineans]
          Length = 299

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 30/232 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G  + ++G  N GKS+L NAL    V+IV++ P TTR  L          + + DT 
Sbjct: 8   YRSG-SVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIASFPAGQLLLVDTP 66

Query: 276 GI-RETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISF----PKNIDFIFIGT 327
           G+ RE    + +   +     +E  D  LL+ E    + +  ++F       I  + +  
Sbjct: 67  GLHREHKRAMNRVMNRAARGALEGVDAGLLVIEAGRWDEEDTLAFNVLGDAGIPVVLVVN 126

Query: 328 KSDLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D     T                  H +S+   +G+E L+  + +++           
Sbjct: 127 KVDRLKDKTALLPFLQQVSDGRSFAAVHPVSALKRKGMEALVRDLLALVPEAPPMFGEDE 186

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK-----DCGLDIIAENLRLASVSLGKIT 420
            + +   +   + VR   M  L E+        ++  AE+   A + +G + 
Sbjct: 187 ITDRSQRFLAGELVREQLMRQLGEELPYATTVEIERFAED--GALLRIGAVI 236


>gi|163846033|ref|YP_001634077.1| GTP-binding proten HflX [Chloroflexus aurantiacus J-10-fl]
 gi|222523761|ref|YP_002568231.1| GTP-binding proten HflX [Chloroflexus sp. Y-400-fl]
 gi|163667322|gb|ABY33688.1| GTP-binding proten HflX [Chloroflexus aurantiacus J-10-fl]
 gi|222447640|gb|ACM51906.1| GTP-binding proten HflX [Chloroflexus sp. Y-400-fl]
          Length = 445

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 92/244 (37%), Gaps = 27/244 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++     +  +  +     D+  H    +          I ++G++NAGKS+L NA+   
Sbjct: 181 EIDRRLIERRIAWLKDQLADVHRHRELYRQRRRQTGIPVIALVGYTNAGKSTLLNAMTGA 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV +  D    T D  T  + L G +V + +DT G  +          + T  E+E ADL
Sbjct: 241 DV-LAEDKLFATLDPTTRQVLLPGNIVALMTDTVGFIQKLPPQLVAAFRATLEEIEEADL 299

Query: 302 ILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEE----------- 338
           +L + ++  +      +            +   + +  K DL    T E           
Sbjct: 300 LLHVVDVTHRNAQEHAQTVEQTLRELGVDHKPVLTVLNKIDLLEGATAEDVGQIAAEMGL 359

Query: 339 --YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                 +S+  G GL+ L  +I ++L+ +  ++   IP  +  L  L +    +E+    
Sbjct: 360 PTDIVAVSAQRGWGLQTLGERIVAMLAQRMVRVDAYIPYQRNDLVALWRQRGVIEVEEFE 419

Query: 397 EKDC 400
               
Sbjct: 420 GDGA 423


>gi|83719946|ref|YP_442266.1| GTP-binding protein Era [Burkholderia thailandensis E264]
 gi|167619237|ref|ZP_02387868.1| GTP-binding protein Era [Burkholderia thailandensis Bt4]
 gi|83653771|gb|ABC37834.1| GTP-binding protein Era [Burkholderia thailandensis E264]
          Length = 299

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    L+       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYVFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P     + +  K D  S 
Sbjct: 74  STALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPGTPTLLVANKLDRVSD 133

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               Y                  S+   E ++ L+N IK  L            + +   
Sbjct: 134 KDTLYPFFQKMGELREFAEIVPLSAKHPEDIQRLMNTIKPYLPEGDAIYGEDDLTDRSSR 193

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 194 FLAAEILR 201


>gi|305666362|ref|YP_003862649.1| putative GTP-binding protein [Maribacter sp. HTCC2170]
 gi|88708354|gb|EAR00591.1| putative GTP-binding protein [Maribacter sp. HTCC2170]
          Length = 296

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 78/187 (41%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ + + V +SDT GI +  
Sbjct: 9   VNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGDDFQVILSDTPGIIKPA 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDLYST 334
             ++   +       E+AD++L + EI  K        E      I  + +  K D  + 
Sbjct: 69  YELQSSMMDFVKSAFEDADVLLYMVEIGEKALKDEKFFEKIKNSEIPVLLLLNKIDASTQ 128

Query: 335 YTEE-------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
              E               H +S+     ++ +  +I  +L       P    + K   +
Sbjct: 129 EILEEQIQYWQEQLPTVEIHPVSALNNFNVKGVFERILELLPTSPAYYPKDQLTDKPERF 188

Query: 382 HLSQTVR 388
            +++T+R
Sbjct: 189 FVNETIR 195


>gi|288930106|ref|ZP_06423944.1| GTP-binding protein Era [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328579|gb|EFC67172.1| GTP-binding protein Era [Prevotella sp. oral taxon 317 str. F0108]
          Length = 293

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 78/187 (41%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   ++     +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTPEMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPK-----NIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++  + +K   F +      I  + +  K D    
Sbjct: 67  YKLQESMLAFSVSALSDADVLLYVTDVVEDPEKNADFLEKVRGMKIPVLLLINKIDESDQ 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                          +     IS+    G + L+ +I+ +L            + K   +
Sbjct: 127 KTLGDIVERWHALLPKAEILPISAKNKFGTDLLLRRIQELLPESPPYFDKDQLTDKPARF 186

Query: 382 HLSQTVR 388
            +S+ +R
Sbjct: 187 FVSEIIR 193


>gi|171322522|ref|ZP_02911315.1| GTP-binding protein Era [Burkholderia ambifaria MEX-5]
 gi|171092149|gb|EDT37557.1| GTP-binding protein Era [Burkholderia ambifaria MEX-5]
          Length = 287

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 68/191 (35%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T     +       DT G +   
Sbjct: 2   IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPGFQTRH 61

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D+IL + E       + K     P  +  + I  K D  + 
Sbjct: 62  STALNRSLNRAVTSTLTSVDVILFVIEAGRFGPDDQKVLDLIPPGMPTLLIANKIDRVND 121

Query: 335 YTEEYDHLISSFTGEGLEELI-------NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
               +  +          EL+         IK +L      LP   P +        ++ 
Sbjct: 122 KATLFPFMQKVSELREFTELVPLSAQRPEDIKRLLDTIKPYLPEGEPIYGED-ELTDRSS 180

Query: 388 RYLEMASLNEK 398
           R+L    L EK
Sbjct: 181 RFLAAEILREK 191


>gi|27364935|ref|NP_760463.1| GTPase Era [Vibrio vulnificus CMCP6]
 gi|37681014|ref|NP_935623.1| GTP-binding protein Era [Vibrio vulnificus YJ016]
 gi|320155321|ref|YP_004187700.1| GTP-binding protein Era [Vibrio vulnificus MO6-24/O]
 gi|31340056|sp|Q8DC75|ERA_VIBVU RecName: Full=GTPase Era
 gi|61212428|sp|Q7MHN9|ERA_VIBVY RecName: Full=GTPase Era
 gi|27361081|gb|AAO09990.1| GTP-binding protein Era [Vibrio vulnificus CMCP6]
 gi|37199764|dbj|BAC95594.1| GTP-binding protein Era [Vibrio vulnificus YJ016]
 gi|319930633|gb|ADV85497.1| GTP-binding protein Era [Vibrio vulnificus MO6-24/O]
          Length = 320

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 76/212 (35%), Gaps = 26/212 (12%)

Query: 202 DISSHISQGKLG---EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           DI +  S  K     E    G+ I I+G  N GKS+L N +  + ++I +  P TTR  +
Sbjct: 7   DIDAFFSTEKKSTSSENQHCGF-IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRI 65

Query: 259 TIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEI 314
                   Y     DT G+  E    + +   +     + + +L+  L +     +  E+
Sbjct: 66  MGVDTDGDYQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDGTHWTNDDEM 125

Query: 315 SFPK----NIDFIFIGTKSDLYSTYTEEYDHLI--------------SSFTGEGLEELIN 356
              K    N   +    K D      E   H++              S+  G+ ++ L  
Sbjct: 126 VLNKLQKANFPVVLCVNKVDNVQDRNEVMQHMMEMSKKMNFVDVVPISAKQGKNIDVLRK 185

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            ++  L       P    + +   +  S+ VR
Sbjct: 186 HVRDHLPKAVHHFPEEYVTDRSQRFMASEIVR 217


>gi|283783065|ref|YP_003373819.1| GTP-binding protein HflX [Gardnerella vaginalis 409-05]
 gi|283442222|gb|ADB14688.1| GTP-binding protein HflX [Gardnerella vaginalis 409-05]
          Length = 512

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 98/244 (40%), Gaps = 25/244 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + N I  L++DI++       K G   R     + ++G++NAGKSS+ N L   
Sbjct: 256 EMDRRAIRNRISKLRHDIANMAPARDVKRGSRRRQDIPTVAVVGYTNAGKSSIINRLTGS 315

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G    + DT G          E  K T  EV  AD+I
Sbjct: 316 QELVENALFATLDTAVRRSQTQDGRSYTLVDTVGFVRRLPTQLVEAFKSTLEEVGQADVI 375

Query: 303 LLLKEINSKKEISFPK-------------NIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + + +    IS                +I  I    KSD+ S    E          +
Sbjct: 376 LHVVDGSHPDPISQINAVNEVLANISGVEDIPQIMALNKSDMMSDAARERFSSLYSDAVI 435

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+F+GE L+ L N+++ +L +   ++  ++P     L  LS+      +      D G+
Sbjct: 436 VSAFSGENLQILRNRLEELLPSPRVRVDVTLPYEFGGL--LSKVRENGVVEKAEYVDSGV 493

Query: 403 DIIA 406
           ++IA
Sbjct: 494 ELIA 497


>gi|255658526|ref|ZP_05403935.1| GTP-binding protein [Mitsuokella multacida DSM 20544]
 gi|260849328|gb|EEX69335.1| GTP-binding protein [Mitsuokella multacida DSM 20544]
          Length = 409

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 25/177 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  N+GKSSL NAL  + VA V+ +PGTT D +   +++ G   V   DTAG  
Sbjct: 14  LHIGLFGRRNSGKSSLVNALTGQHVATVSSVPGTTTDPVYKAMEIHGIGPVVFIDTAGFD 73

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLK-------------EINSKKEISFPKNIDFIFI 325
           ++  +     ++RT    +  D+ L+L              +     E     +I  I +
Sbjct: 74  DSGSLGALR-VERTRDAAKETDIALVLFSCMPDERAGVGNEDAFDWLERLHQCSIPVIPV 132

Query: 326 GTKSD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            ++ D             T T      +S+ TG G+E L  +I   L   ++    +
Sbjct: 133 ISRIDEGGGADALAEAIETKTGVRPVCVSAVTGAGIESLRTEIARRLPEDYRARSIT 189


>gi|298253511|ref|ZP_06977301.1| GTPase [Gardnerella vaginalis 5-1]
 gi|297532278|gb|EFH71166.1| GTPase [Gardnerella vaginalis 5-1]
          Length = 507

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 98/244 (40%), Gaps = 25/244 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + N I  L++DI++       K G   R     + ++G++NAGKSS+ N L   
Sbjct: 251 EMDRRAIRNRISKLRHDIANMAPARDVKRGSRRRRDIPTVAVVGYTNAGKSSIINRLTGS 310

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G    + DT G          E  K T  EV  AD+I
Sbjct: 311 QELVENALFATLDTAVRRSQTQDGRSYTLVDTVGFVRRLPTQLVEAFKSTLEEVGQADVI 370

Query: 303 LLLKEINSKKEISFPK-------------NIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + + +    IS                +I  I    KSD+ S    E          +
Sbjct: 371 LHVVDGSHPDPISQINAVNEVLANISGVGDIPQIMALNKSDMMSDAARERFSSLYPDAVI 430

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+F+GE L+ L N+++ +L +   ++  ++P     L  LS+      +      D G+
Sbjct: 431 VSAFSGENLQILRNRLEELLPSPRVRVDVTLPYEFGGL--LSKVRENGVVEKAEYVDSGV 488

Query: 403 DIIA 406
           ++IA
Sbjct: 489 ELIA 492


>gi|50085654|ref|YP_047164.1| GTP-binding protein Era [Acinetobacter sp. ADP1]
 gi|49531630|emb|CAG69342.1| GTP-binding protein,16S rRNA-binding, ribosome-associated GTPase
           [Acinetobacter sp. ADP1]
          Length = 345

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 83/215 (38%), Gaps = 25/215 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + I+G  N GKS+L N L  + ++I +  P TTR  +      E       DT G
Sbjct: 41  RSGF-VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSREKSQAVYVDTPG 99

Query: 277 IRETD-DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKN--IDFIFIGTK 328
           + + +   + K   +     + + +L+L + +I     N    +   KN  +  I +  K
Sbjct: 100 MHKKEVRAINKMMNRAAHSALRDVNLVLFVVDIHKWTQNDDLVLEKLKNAEMPVILVINK 159

Query: 329 SD-------LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            D       L     E            +S+  G  L++L + ++  L  +         
Sbjct: 160 VDTLEDKKSLLPLIQERTKLMNFAEIIPVSALRGANLDQLRDTVEKYLPFQPPLYSLDQI 219

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
           + +   +  S+ +R   M  L E +   D+ +   
Sbjct: 220 TDRSERFLASEIIREKIMRQLGE-ELPYDLTVQIE 253


>gi|300023748|ref|YP_003756359.1| GTP-binding protein Era [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525569|gb|ADJ24038.1| GTP-binding protein Era [Hyphomicrobium denitrificans ATCC 51888]
          Length = 312

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 29/211 (13%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           Q + G+  R G+ + +LG +NAGKS+L NAL    VAIV+    TTR  +          
Sbjct: 10  QSEAGDR-RCGF-VTVLGPTNAGKSTLVNALVGTKVAIVSHKVQTTRAPIRGIAVEGQSQ 67

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNI 320
           +   DTAGI      +++  I   +  +E+AD +LL+ +  +  +              +
Sbjct: 68  IVFLDTAGIFNPKRRLDRAMIDAAWSGLEDADAVLLVIDAAAGPDDDVMAIVQRLKTARM 127

Query: 321 DFIFIGTKSD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL---- 362
             I +  K D              L      +   ++S+  G+G+ +L   + + +    
Sbjct: 128 KRIAVLNKIDRVEDKPKLLALAKRLDQELAFDRIFMVSALDGKGVADLRTYLAAAVPVGP 187

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTV-RYLEM 392
            +  +     +P   +      + + RYL  
Sbjct: 188 WHYGEDDVTDVPMRTQAAEMTRECIYRYLHQ 218


>gi|102139740|gb|ABF69947.1| GTPase family protein [Musa acuminata]
          Length = 305

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 24/191 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG  N GKS+L N +  + ++IVT+ P TTR  +        Y + + DT G+ E  
Sbjct: 10  VAVLGRPNVGKSTLSNQMIGQKLSIVTEKPQTTRHRILGICSGPEYQMILYDTPGVIEKK 69

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKE-------INSKKEI---SFPKNIDFIFIGTKSD 330
             +++   +K       NAD +L++ +       I+   E    +   N+  + +  K D
Sbjct: 70  MHMLDSMMMKNVRSAAINADCVLVVVDACKVPHKIDDVLEEGIGTLRDNLPILLVLNKKD 129

Query: 331 L------------YSTYTEEYDHLISSFT-GEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           L            Y  +T   D +  S   G+G++++ + I S L       P  I S  
Sbjct: 130 LIKPGEIAKRLEWYQKFTNVDDVIPVSAKFGQGVDDVKDWILSKLPFGPAYYPKDIASEH 189

Query: 378 RHLYHLSQTVR 388
              + +++ VR
Sbjct: 190 PERFFVAEIVR 200


>gi|121602370|ref|YP_988790.1| GTP-binding protein Era [Bartonella bacilliformis KC583]
 gi|120614547|gb|ABM45148.1| GTP-binding protein Era [Bartonella bacilliformis KC583]
          Length = 301

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 80/198 (40%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L    V+IVT    TTR ++   +  E   + + DT GI    
Sbjct: 12  VSLVGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIVIHEKTQIVLVDTPGIFRPR 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSD--- 330
             +E+  +   +  + +AD +L+L ++ +                  D I +  K D   
Sbjct: 72  KRLERAMVSAAWSGIRDADALLVLIDVQNGLSDEVNAMLDNLANIKQDKILVLNKIDTVA 131

Query: 331 ------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 L +   E  +     +IS+  G G ++L++ + +++       P    S     
Sbjct: 132 KSSLLALTAKINERVNFLRTFMISALNGSGCKDLLDYLSTMMQPGPWCYPEDQISDMPMR 191

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+E+
Sbjct: 192 QLAAEITREKLFFRLHEE 209


>gi|307292854|ref|ZP_07572700.1| GTP-binding protein Era [Sphingobium chlorophenolicum L-1]
 gi|306880920|gb|EFN12136.1| GTP-binding protein Era [Sphingobium chlorophenolicum L-1]
          Length = 302

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 69/196 (35%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G  I I+G  NAGKS+L NAL  + VAI +    TTR  +          + + D
Sbjct: 6   ESQRCGV-IAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQMVLVD 64

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFI 325
           T GI      +++  ++  +   + ADLI L+ +  +               +      I
Sbjct: 65  TPGIFAPKRRLDRAMVQAAWGGAQGADLIALVVDGKAGLGAKMEPIVSALAARPEKKWLI 124

Query: 326 GTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D             LY          +S+ TG+GL EL       +       P  
Sbjct: 125 LNKVDIAIKEKLLVHTQRLYEQLDIAETFFVSAATGDGLPELKTAFARAMPEGPWHFPED 184

Query: 373 IPSHKRHLYHLSQTVR 388
             S        ++  R
Sbjct: 185 QVSDATDRMLAAEITR 200


>gi|169831271|ref|YP_001717253.1| HSR1-like GTP-binding protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638115|gb|ACA59621.1| GTP-binding protein, HSR1-related [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 422

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 21/241 (8%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ + D+     ++  H    +    +     + ++G++NAGKSSL NAL    V+ V D
Sbjct: 172 RQRIADLQREIAEVRRHRQLLRRARKVAPVPLVALVGYTNAGKSSLLNALTGAVVS-VED 230

Query: 250 IPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D  +  L L    +V ++DT G             + T  EV  ADL+L + ++
Sbjct: 231 RLFATLDPTSRQLRLPTNEVVVLTDTVGFIRHLPHHLVAAFRATLEEVVEADLLLHVVDL 290

Query: 309 NSKKEISF------------PKNIDFIFIGTKSDLYS----TYTEEYDHLISSFTGEGLE 352
           +     +                   + +  K+DL            D  +S+ TG GL+
Sbjct: 291 SHPAHQAHITAVDGVLEELGAGGKPRLMVFNKTDLVEPGELDLLGRNDVAVSALTGAGLD 350

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            L   +   LS    +  F IP  +  L  L     +  + + + ++ G++I    L +A
Sbjct: 351 TLRAAVADALSTWRTRERFLIPYSRTQLVAL--AYEHGRVLAEHHREDGVEI-EVELPVA 407

Query: 413 S 413
            
Sbjct: 408 W 408


>gi|116749276|ref|YP_845963.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698340|gb|ABK17528.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB]
          Length = 422

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 18/169 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  N GKSSL NA+ +++VAIV++I GTT D +   ++L     V   DTAGI 
Sbjct: 10  LHIGIFGRRNVGKSSLLNAVTRQEVAIVSEIAGTTTDPVEKPMELLPLGPVLFIDTAGID 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL 331
           +   + E   +++T    +  DL +L+ E        +   E      I  + +  KSDL
Sbjct: 70  DEGALGELR-VRKTRQVFDRTDLGVLVAEAGLWGGFEDRMLEELSAHGIPVVIVLNKSDL 128

Query: 332 YSTYT---------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                         +     +S+ +GEG+      +           P 
Sbjct: 129 GKPDPGLLRKLADRKLPAVSLSARSGEGILSFRRALLDNAPADLIDNPA 177


>gi|309800252|ref|ZP_07694428.1| GTP-binding protein Era [Streptococcus infantis SK1302]
 gi|308116105|gb|EFO53605.1| GTP-binding protein Era [Streptococcus infantis SK1302]
          Length = 299

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D ++ +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVIFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L +   +  + +        S+  G  +  LI+ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRNQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|330686118|gb|EGG97739.1| ribosome biogenesis GTPase Era [Staphylococcus epidermidis VCU121]
          Length = 299

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +    +AI++D   TTR+ +   +  +   +   DT GI +  
Sbjct: 9   VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGIMTRDDAQIIFIDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY- 332
             +    +K     +   D I+ +  +N           ++          +  K DL  
Sbjct: 69  HKLGDYMMKVATNTLSEIDAIMFMVNVNEDIGRGDEYIMDMLKDLKTPVFLVLNKIDLVH 128

Query: 333 -STYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 + +              S+  G  ++  I+ +KS L    K  P    S     
Sbjct: 129 PDALMPKIEKYQEYMNFTEIVPISALEGLNVDHFIDVLKSYLPEGPKYYPDDQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGEIIR 196


>gi|167041437|gb|ABZ06189.1| putative GTPase of unknown function [uncultured marine
           microorganism HF4000_006O13]
          Length = 332

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 10/149 (6%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+GY + ++G  N GKS+L NAL  + V+IVT  P TT+  +   + L    + + DT 
Sbjct: 51  YRSGY-VAVIGRPNVGKSTLVNALVGEKVSIVTSKPQTTQINILGIVHLPHAQIMLVDTP 109

Query: 276 GI--RETDDIVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFPK-----NIDFIFIG 326
           G+       +  K+  K T   +  ADL +++ E+N   K++    +     N + I   
Sbjct: 110 GLLSGRGKRLSSKQTRKETRNALAMADLAVVVVEVNRWKKEDDYLMERLGEFNFEKILAV 169

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            K DL+   ++  D L  S T    +E++
Sbjct: 170 NKIDLFKDKSQILDFLAQSSTKGSFKEIV 198


>gi|313886420|ref|ZP_07820140.1| hydrogenase maturation GTPase HydF [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924136|gb|EFR34925.1| hydrogenase maturation GTPase HydF [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 399

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 21/175 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
              +++++G  N+GKS+LFN L +++ ++V+D  GTT D +    +L     + + DT G
Sbjct: 10  ERKRLLLVGQVNSGKSTLFNRLLRQERSLVSDQAGTTTDSVEKLFELPSVGPILLVDTPG 69

Query: 277 IRETDDIVEKEGIKR-TFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSD 330
           +   DD       +R T L + +ADL+L L       +          N+  + I  ++D
Sbjct: 70  L--ADDTPLGAERQRVTQLALSSADLVLYLLSCEDSLDTPIIAALRKANVPTLPIIARAD 127

Query: 331 LYSTYT-----EEYDHLISSF-------TGEGLEELINKIKSILSNKFKKLPFSI 373
           L    +     EE  H              E L+ L+ KIK +L N  +  P  +
Sbjct: 128 LPEQSSWLERQEEIVHCFGHAPLSLRQNDDESLDTLLEKIKQMLHNVSEPTPSLL 182


>gi|210621260|ref|ZP_03292566.1| hypothetical protein CLOHIR_00509 [Clostridium hiranonis DSM 13275]
 gi|210154871|gb|EEA85877.1| hypothetical protein CLOHIR_00509 [Clostridium hiranonis DSM 13275]
          Length = 412

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 37/198 (18%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +++    E +  G    I G  N GKSSL NA+  +++++V+D  GTT D +   ++L G
Sbjct: 4   LNETPRAERLHIG----IYGRRNNGKSSLINAITGQNISLVSDFAGTTTDPVYKSMELHG 59

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL----------------KEIN 309
              V   DTAG  +  ++ +   ++RT   V   D+ +++                 +I 
Sbjct: 60  IGPVVFIDTAGFDDEGELGQMR-VERTLDAVNKTDIAIVVLSDENILIKEEKMFKGLDIE 118

Query: 310 SKKE-ISFPKNIDFI--FIGTKSDLYSTYTEE------------YDHLISSFTGEGLEEL 354
            +KE IS  K        +  K D  S    E               L S+   +G+  +
Sbjct: 119 IEKEWISNLKKAKVPYLVVINKIDKISDLNLEKATENISDELKIKPILTSAVDKKGVALI 178

Query: 355 INKIKSILSNKFKKLPFS 372
             ++  +L  ++     +
Sbjct: 179 REELIRLLPEEYSMRSIT 196


>gi|332879047|ref|ZP_08446756.1| ribosome biogenesis GTPase Era [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332682996|gb|EGJ55884.1| ribosome biogenesis GTPase Era [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 294

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 75/163 (46%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   L+ E   +  SDT G+ + +
Sbjct: 8   VNIVGNPNVGKSTLMNLLVGERISIATFKAQTTRHRIMGILNTEDMQICFSDTPGVLKPN 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDL--- 331
             +++  +  +   +++AD++L + ++     K      K    ++  + +  K D+   
Sbjct: 68  YKLQESMLNFSESALQDADVLLYVTDMVETPDKNGDFLEKVSKMDVPVLLLINKIDVSNQ 127

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                     ++   +     IS+     ++ ++N+IK +L +
Sbjct: 128 QELTSKVEAWHAVLPKAEIIPISALCKFNIDTVLNRIKELLPD 170


>gi|261749630|ref|YP_003257316.1| putative cell growth GTP-binding protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497723|gb|ACX84173.1| putative GTP-binding protein (cell growth-related) [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
          Length = 305

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 35/225 (15%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I ++G+ + I+G  N GKS+L N+L  +D++I+T  P TTR  +   +D     +  SDT
Sbjct: 7   IHKSGF-VNIIGFPNVGKSTLMNSLVGEDLSIITHKPQTTRHRILGIVDKYNAQIIFSDT 65

Query: 275 AGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI-------------NSKKEISFPKNI 320
            G   +T   +++  +K     +E+AD++L   EI             NS K I    N 
Sbjct: 66  PGFMIKTAFFMQRIMMKYIERSLEDADIVLFTTEIGKFSISDKYFSILNSLKNIK--NNK 123

Query: 321 DFIFIGTKSDLYSTYTEEYDHL-----------------ISSFTGEGLEELINKIKSILS 363
            F+ +  K D      +E                     IS+      + L++KI  +LS
Sbjct: 124 PFLILINKIDKIGIECDEKILYETINYWHRIFPHSEILPISALKNINQDLLMDKILGLLS 183

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAE 407
                 P    S K   + +++ +R  + +    E    ++I  E
Sbjct: 184 EHPPYYPKGFLSDKSKRFFVNEIIREKIFLLYKKEIPYSVEIFTE 228


>gi|239993709|ref|ZP_04714233.1| GTP-binding protein Era [Alteromonas macleodii ATCC 27126]
          Length = 303

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 71/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+ ++ 
Sbjct: 11  VAIVGRPNVGKSTLLNRLLGQKVSITSRKPQTTRHRILGIDTDGDYQAIYVDTPGLHQDE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     +    L+L + E    N++ E+   K    N+    I  K D   
Sbjct: 71  KRAINRYMNRAASSSLAEVGLVLFVVEGDRFNAEDEMVLSKVKQANLPCYLIVNKMDKVE 130

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L   +  E+   IS+  G  ++E+   +   L       P    + +  
Sbjct: 131 DKENFMVHLKKLGEKHPFEHMIPISAKQGRMVDEIRELVAKSLPKSEFFFPEDYITDRSS 190

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 191 RFMAAEIIR 199


>gi|260913783|ref|ZP_05920259.1| GTP-binding protein Era [Pasteurella dagmatis ATCC 43325]
 gi|260632322|gb|EEX50497.1| GTP-binding protein Era [Pasteurella dagmatis ATCC 43325]
          Length = 306

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 17  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHIEE 76

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     + + DLI+ + +    N   E+   K        +    K D   
Sbjct: 77  KRAINRLMNRAASSAIGDVDLIIFVVDGTHWNEDDEMVLNKLRAAKTPVVLAINKIDNIK 136

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L S +   +   IS+ +G+ + EL   +++ L       P    + +  
Sbjct: 137 NKEEMLPFITELSSKFGFAHVVPISAQSGKNVNELEKIVRNSLREGIHHFPEEYVTDRSQ 196

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 197 RFMASEIIR 205


>gi|90424140|ref|YP_532510.1| GTP-binding protein Era [Rhodopseudomonas palustris BisB18]
 gi|90106154|gb|ABD88191.1| GTP-binding protein Era [Rhodopseudomonas palustris BisB18]
          Length = 320

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 85/203 (41%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +  +   + + DT G
Sbjct: 26  RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEDHAQIILVDTPG 84

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTK 328
           I      +++  +K  +    +ADL+ +L +    I+ + +    K    N   I +  K
Sbjct: 85  IFLPKRRLDRAMVKTAWSGAHDADLVCVLLDAREGIDEEADAILTKLSQVNHPKILVINK 144

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D+ S                 +   ++S+ +G+G+E+L   + S +       P    S
Sbjct: 145 VDIVSKEKLLKLAQSANERLKFDETFMVSALSGDGVEDLRKSLASKVPPGPYHYPEDQMS 204

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                +  ++  R      L+++
Sbjct: 205 DAPMRHLAAEITREKIFRQLHQE 227


>gi|167581152|ref|ZP_02374026.1| GTP-binding protein Era [Burkholderia thailandensis TXDOH]
          Length = 299

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    L+       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYVFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P     + +  K D  S 
Sbjct: 74  STALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPGTPTLLVANKLDRVSD 133

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               Y                  S+   E ++ L+N IK  L            + +   
Sbjct: 134 KDTLYPFFRKMGELREFAEIVPLSAKHPEDIQRLMNTIKPYLPEGDAIYGEDDLTDRSSR 193

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 194 FLAAEILR 201


>gi|160903293|ref|YP_001568874.1| small GTP-binding protein [Petrotoga mobilis SJ95]
 gi|160360937|gb|ABX32551.1| small GTP-binding protein [Petrotoga mobilis SJ95]
          Length = 398

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 18/157 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  N GKSSL NA+  +++A+V+++ GTT D +   ++L+    V + DT GI + 
Sbjct: 11  IAIAGRRNVGKSSLINAIVNQEIALVSNVAGTTTDPVYKSMELQPIGPVTLIDTPGIDDE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSD---- 330
            ++ +K  I+R       AD+ +L+ +        S  ++    NI FI +  K D    
Sbjct: 71  GELGKKR-IERAKRAFYKADVGVLVVDSEPNGFEHSICDLFEKMNIPFIIVLNKIDQLNN 129

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
                 LY          +S      +E +   +  +
Sbjct: 130 VSNLKQLYINSFGRPVLEVSCKEKINIERVKEALTEL 166


>gi|27380171|ref|NP_771700.1| GTP-binding protein Era [Bradyrhizobium japonicum USDA 110]
 gi|30178619|sp|O69162|ERA_BRAJA RecName: Full=GTPase Era
 gi|27353325|dbj|BAC50325.1| GTP-binding protein Era [Bradyrhizobium japonicum USDA 110]
          Length = 308

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 82/202 (40%), Gaps = 22/202 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           + G+     R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +     
Sbjct: 5   ASGEAPAATRCGF-VALIGAPNVGKSTLVNALVGAKVTIVSRKVQTTRALIRGIVIENNA 63

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----N 319
            + + DT GI      +++  +   +    +ADL+ +L +    I+ + E    K    N
Sbjct: 64  QIILVDTPGIFSPKRRLDRAMVSTAWSGAHDADLVCVLLDAKTGIDEEAEAILAKAASVN 123

Query: 320 IDFIFIGTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            D I +  K DL                       +I++ +G+G+++L + +  ++    
Sbjct: 124 HDKILVINKVDLVQREKLLALAQAANERMPFAKTFMIAAISGDGVDDLRSTLAEMVPPGP 183

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
              P    S     +  ++  R
Sbjct: 184 FLYPEDQMSDAPMRHLAAEITR 205


>gi|332367331|gb|EGJ45066.1| GTP-binding protein Era [Streptococcus sanguinis SK1059]
          Length = 299

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVEAAYSTLREVDTVLFMVPADETRGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L +   +       +    IS+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRQQMDFKEIVPISALQGNNVSRLVDILSENLEEGFQYFPEDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|218680771|ref|ZP_03528668.1| tRNA modification GTPase TrmE [Rhizobium etli CIAT 894]
          Length = 77

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
            +F  L  +IPS  RH   L++ +  L+ A++++ D  L++  E LR+A+  LGKITG V
Sbjct: 2   ERFGALSMAIPSRTRHKDSLAKCLLALD-AAISQIDVNLELRTEQLRVAAEFLGKITGRV 60

Query: 424 DVEQLLDIIFSKFCIGK 440
           DVEQLL +IFS+FCIGK
Sbjct: 61  DVEQLLGVIFSEFCIGK 77


>gi|163839487|ref|YP_001623892.1| GTP-binding protein [Renibacterium salmoninarum ATCC 33209]
 gi|162952963|gb|ABY22478.1| GTP-binding protein [Renibacterium salmoninarum ATCC 33209]
          Length = 526

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 117/343 (34%), Gaps = 41/343 (11%)

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN-GKIDLLEA 128
           P P +F G         G    +  ++        +  A      RR+ E+  K+ +++ 
Sbjct: 151 PDPGTFLG--------SGKALALKDVVSATGADTVVVDAELAPSQRRSLEDIVKVKVIDR 202

Query: 129 ESLADLISSETEMQR----RLSMEGMSGELSSLYGQW-----IDKLTHIRSFIEADLDFS 179
            +L   I ++    R    ++ +  +   L      W           +           
Sbjct: 203 TALILDIFAQHAKSREGKAQVELAQLE-YLLPRLRGWGESMSRQAGGQVGGAGAGMGSRG 261

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIR-NGYKIVILGHSNAGKSSLF 236
             E       + +   +  L+ +I++     + K     R       I G++NAGKSS+ 
Sbjct: 262 PGETKIELDRRRIRTRMAKLRREIAAMKPAREAKRANRRRSEVPSAAIAGYTNAGKSSIL 321

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L    V +   +  T    +      +G    ++DT G   +      E  + T  EV
Sbjct: 322 NRLTHAGVLVQNALFATLDPTVRKAATPDGIGFTLADTVGFVRSLPTQLVEAFRSTLEEV 381

Query: 297 ENADLILLLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTY-------TE 337
            +ADLIL + +++                    + I  I +  K+D             E
Sbjct: 382 ADADLILHVVDVSHPDPEGQIAAVREVLSEVDARKIPEIIVLNKADAADPLVIQRLTQRE 441

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               L+S+ TG+G++EL+  I   +     +L   IP  +  L
Sbjct: 442 TRSVLVSARTGQGIDELLELISQAIPRPGVELELMIPYDRGDL 484


>gi|54310186|ref|YP_131206.1| GTP-binding protein Era [Photobacterium profundum SS9]
 gi|46914627|emb|CAG21404.1| putative GTP-binding protein Era [Photobacterium profundum SS9]
          Length = 301

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 79/207 (38%), Gaps = 23/207 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E    G+ I I+G  N GKS+L N L  + ++I +  P TTR  +      +GY     D
Sbjct: 3   EKQHCGF-IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVFID 61

Query: 274 TAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFI 325
           T G+  E    + +   +     + + +L+L L +     +  E+   K     +  + +
Sbjct: 62  TPGLHIEEKRTINRLMNRAASSSLTDVELVLFLVDGTMWTADDEMVLNKLKKSELPTVLL 121

Query: 326 GTKSDLYSTYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
             K D      + + H               IS+  G  ++ +   +++ +       P 
Sbjct: 122 INKVDNVKEKGDLFPHLDALSKKMDFVDVVPISAKKGTNVDAVEKIVRAHIPEGEYYFPE 181

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEK 398
              + +   +  S+ +R   M  L E+
Sbjct: 182 DYVTDRSQRFMASEIIREKLMRFLGEE 208


>gi|313837272|gb|EFS74986.1| GTP-binding protein Era [Propionibacterium acnes HL037PA2]
 gi|314928053|gb|EFS91884.1| GTP-binding protein Era [Propionibacterium acnes HL044PA1]
 gi|314972043|gb|EFT16141.1| GTP-binding protein Era [Propionibacterium acnes HL037PA3]
          Length = 341

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 43/256 (16%)

Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E 
Sbjct: 29  ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTGEK 88

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISF 316
             + + DT G+ +   ++ +      F      D+I +    N +          +   F
Sbjct: 89  SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIADF 148

Query: 317 PKNIDFIFIGTKSDLYS------------TYTEEY------DHLISSFTGEGLEELINKI 358
           P+    I + TKSDL S               EE           S+ +GE ++E+ + I
Sbjct: 149 PRRPTLIALATKSDLVSKARMAEHLVAIGKLQEEVGIEFAEIIPCSAVSGEQVDEVRDAI 208

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLDIIAENLRLASVS 415
            S+L       P    + +     +++ +R   +  + E       ++I+   LR     
Sbjct: 209 VSLLPEGPAYYPDGEVTDEPTDTLVAELIREAALEGVREELPHSLAVEIVEMGLRE---- 264

Query: 416 LGKITGCVDVEQLLDI 431
                G  D   LLD+
Sbjct: 265 -----GQPDDHPLLDV 275


>gi|15674592|ref|NP_268766.1| GTP-binding protein Era [Streptococcus pyogenes M1 GAS]
 gi|71910203|ref|YP_281753.1| GTP-binding protein Era [Streptococcus pyogenes MGAS5005]
 gi|81175288|sp|P0C0B9|ERA_STRP1 RecName: Full=GTPase Era
 gi|13621702|gb|AAK33487.1| GTP-binding protein (GTPase) [Streptococcus pyogenes M1 GAS]
 gi|71852985|gb|AAZ51008.1| GTP-binding protein homolog [Streptococcus pyogenes MGAS5005]
          Length = 298

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 7   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY- 332
             +    ++  +  +   + +L +   + K+        E      I  I +  K D   
Sbjct: 67  TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKVH 126

Query: 333 -STYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                E+ D              S+  G  +  LI  +   L   F+  P    +     
Sbjct: 127 PDQLLEQIDDFHSQMDFKEVVPISALEGNNVPTLIKLLTDNLEEGFQYFPEDQITDHPER 186

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 187 FLVSEMVR 194


>gi|262273709|ref|ZP_06051522.1| GTP-binding protein Era [Grimontia hollisae CIP 101886]
 gi|262222124|gb|EEY73436.1| GTP-binding protein Era [Grimontia hollisae CIP 101886]
          Length = 304

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  +      +GY     DT G+  E 
Sbjct: 13  IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVYVDTPGLHIEE 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L+L L +        E+   K     +  + +  K D   
Sbjct: 73  KRTINRLMNRAASSSLTDVELVLFLVDGTHWTQDDEMVLNKLKKAQLPTVLLVNKVDNVK 132

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E + H               +S+  G  ++ +   ++  L       P    + +  
Sbjct: 133 EKGELFPHLQEISQKMDFIDVVPVSAKHGTNIDVVEKLVRKHLPEGEWYFPEEYVTDRSQ 192

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 193 RFMASEIIR 201


>gi|313675799|ref|YP_004053795.1| GTP-binding protein era [Marivirga tractuosa DSM 4126]
 gi|312942497|gb|ADR21687.1| GTP-binding protein Era [Marivirga tractuosa DSM 4126]
          Length = 294

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + ++I+T    TTR  +   L    + +  SDT GI    
Sbjct: 11  VSIVGKPNVGKSTLMNALVGERLSIITSKAQTTRHRIMGILSGADFQIVYSDTPGILSPQ 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKN--IDFIFIGTKSDL--- 331
             +    ++     +E+AD++L + ++  K E     I   KN  +  I I  K D    
Sbjct: 71  YELHNSMMRFVKAALEDADIMLFVTDLYEKYEEGDVLIDRIKNSGVPIILIMNKIDQSKG 130

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                           ++  ++S+     ++ L NK+  +L       P    + K   +
Sbjct: 131 SQAQDKMKYWAEIIEPDHQIMVSALEKVNIDGLFNKLMDLLPVHPPYFPKEEMTDKPEKF 190

Query: 382 HLSQTVR 388
            + + +R
Sbjct: 191 FVEEIIR 197


>gi|229825491|ref|ZP_04451560.1| hypothetical protein GCWU000182_00851 [Abiotrophia defectiva ATCC
           49176]
 gi|229790054|gb|EEP26168.1| hypothetical protein GCWU000182_00851 [Abiotrophia defectiva ATCC
           49176]
          Length = 393

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 11/157 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I   G  N GKSSL NA+  +++++V+DI GTT D +   ++L     V I DTAG
Sbjct: 10  ERVHIAFFGLRNVGKSSLVNAVTGQELSVVSDIKGTTTDPVKKAMELLPLGPVVIIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTK 328
           + +   + +   +K++   ++  D+ +L+ E + +              + I ++    K
Sbjct: 70  LDDEGKLGDLR-VKKSLEILDITDIAVLVTEADRELNELEKELLENFSKRKIPYLIALNK 128

Query: 329 SDLYSTYT-EEYDHLISSFTGEGLEELINKIKSILSN 364
           SDL      EE + L+S+  G  + E   ++  +   
Sbjct: 129 SDLTENRKEEENEILVSAKDGTNIYEFKERLAKLFPE 165


>gi|113868516|ref|YP_727005.1| GTP-binding protein Era [Ralstonia eutropha H16]
 gi|113527292|emb|CAJ93637.1| GTPase [Ralstonia eutropha H16]
          Length = 312

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 24/191 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + ++I +    TTR  +      +       DT G +   
Sbjct: 24  VAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRIVGIQTTDDAQYVFVDTPGFQTRH 83

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSD---- 330
                  + R     + + DL+L + E       + K     PKN   + +  K D    
Sbjct: 84  ASALNRSLNRAVTSTLSSVDLVLFVVEAGYYGADDEKVLSLLPKNTPVLLVANKLDRVNG 143

Query: 331 ---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                          +++       +++ T + +  L   I+  L            + +
Sbjct: 144 ENRLEVMMPFLEKMGQQFPFREVVPMTAKTHDHIARLFEIIRPYLPEGEPMYDADAMTDR 203

Query: 378 RHLYHLSQTVR 388
              +  S+ +R
Sbjct: 204 SERFLASEIIR 214


>gi|328907177|gb|EGG26943.1| GTP-binding protein Era [Propionibacterium sp. P08]
          Length = 340

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 43/256 (16%)

Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E 
Sbjct: 28  ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTGEK 87

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISF 316
             + + DT G+ +   ++ +      F      D+I +    N +          +   F
Sbjct: 88  SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIADF 147

Query: 317 PKNIDFIFIGTKSDLYS------------TYTEEY------DHLISSFTGEGLEELINKI 358
           P+    I + TKSDL S               EE           S+ +GE ++E+ + I
Sbjct: 148 PRRPTLIALATKSDLVSKARMAEHLVAIGKLQEEVGIEFAEIIPCSAVSGEQVDEVRDAI 207

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLDIIAENLRLASVS 415
            S+L       P    + +     +++ +R   +  + E       ++I+   LR     
Sbjct: 208 VSLLPEGPAYYPDGEVTDEPTDTLVAELIREAALEGVREELPHSLAVEIVEMGLRE---- 263

Query: 416 LGKITGCVDVEQLLDI 431
                G  D   LLD+
Sbjct: 264 -----GQPDDHPLLDV 274


>gi|255525914|ref|ZP_05392841.1| small GTP-binding protein [Clostridium carboxidivorans P7]
 gi|255510408|gb|EET86721.1| small GTP-binding protein [Clostridium carboxidivorans P7]
          Length = 411

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 20/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  NAGKSS+ NAL  +++A+V+++ GTT D +   +++     V + DTAG
Sbjct: 11  NRLHIALFGKRNAGKSSIINALTGQEIALVSEVKGTTTDPVYKAMEILPIGPVVLIDTAG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIG--TK 328
           + +  ++ E    K+    +   D+ +L+ +         K  +S  +      IG   K
Sbjct: 71  LDDEGELGELRK-KKAMEVLTKTDVAILVIDAEIGVTDFDKDILSKIRGRKIPVIGALNK 129

Query: 329 SDLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKK 368
           +D+ +   +    +           S+ + +G++ + N++  I+     K
Sbjct: 130 TDINNINADALSEMQNQLDLKLIPVSAVSNKGIDLIKNELIKIVPEDEDK 179


>gi|90412087|ref|ZP_01220094.1| GTP-binding protein Era [Photobacterium profundum 3TCK]
 gi|90327065|gb|EAS43444.1| GTP-binding protein Era [Photobacterium profundum 3TCK]
          Length = 301

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 80/207 (38%), Gaps = 23/207 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E    G+ I I+G  N GKS+L N L  + ++I +  P TTR  +      +GY     D
Sbjct: 3   EKQHCGF-IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVFID 61

Query: 274 TAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFI 325
           T G+  E    + +   +     + + +L+L L +     +  E+   K     +  + +
Sbjct: 62  TPGLHIEEKRTINRLMNRAASSSLTDVELVLFLVDGTVWTADDEMVLNKLKKSGLPTVLL 121

Query: 326 GTKSDLYSTYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
             K D      + + H               IS+ +G  ++ +   +++ +       P 
Sbjct: 122 INKVDNVKEKGDLFPHLDALSKKMDFVDVVPISAKSGTNVDAVEKIVRAHIPEGEYYFPE 181

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEK 398
              + +   +  S+ +R   M  L E+
Sbjct: 182 DYVTDRSQRFMASEIIREKLMRFLGEE 208


>gi|4583532|gb|AAD25116.1|AF140550_7 YfgK [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 268

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 71/162 (43%), Gaps = 27/162 (16%)

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVEN 298
           K   +V D+PGTTRD + I ++ +     + DTAG+R+     D VEK  + +T   +E+
Sbjct: 3   KKRLVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIED 62

Query: 299 ADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEE------------ 338
           A+++LL+ +     S +++S            + +  K D  S   +E            
Sbjct: 63  ANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQVKETLDFRLGF 122

Query: 339 ----YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                 H IS+  G G+  L   ++    +  +++  ++ + 
Sbjct: 123 IDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTR 164


>gi|261337501|ref|ZP_05965385.1| GTP-binding protein [Bifidobacterium gallicum DSM 20093]
 gi|270277898|gb|EFA23752.1| GTP-binding protein [Bifidobacterium gallicum DSM 20093]
          Length = 523

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 103/257 (40%), Gaps = 26/257 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   I  L+  I+      Q K G   R G   + ++G++NAGKSSL N L   
Sbjct: 255 EMDRRVIRTRIARLRKQIAQMAPSRQVKRGSRRRTGLPTVAVVGYTNAGKSSLTNRLTGS 314

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G      DT G          E  K T  EV  ADLI
Sbjct: 315 SELVENALFATLDTAVRRAQSADGRRYAYVDTVGFVRRLPTQLVEAFKSTLEEVGEADLI 374

Query: 303 LLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYD-------HL 342
           + + + +               K+I     I  + +  K+DL      E          +
Sbjct: 375 VHVVDSSHPDPFSQIDAVNDVLKDIDGVGEIPTLTVFNKADLIDNAKRERIASLMPDAFI 434

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +SS +GEG++ L   ++ +L     ++   +P     L  +++   + E+ +L+ +D G+
Sbjct: 435 VSSASGEGIDTLRESVEGLLPRPDVQVEALLPYTAGSL--INRIREFGELTALDYRDTGI 492

Query: 403 DIIA-ENLRLASVSLGK 418
            +IA  + RLA+  + +
Sbjct: 493 AVIARVDDRLAARIMDE 509


>gi|218679763|ref|ZP_03527660.1| GTP-binding protein EngA [Rhizobium etli CIAT 894]
          Length = 437

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 29/194 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G  +K+ DTAG+R 
Sbjct: 168 LRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRR 227

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      +  A+ ++++ +     E        +   +    +    K
Sbjct: 228 KARVTEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLVLREGRAAVLAFNK 287

Query: 329 SD------------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D                  L           IS  TG GL++L+  I        K++ 
Sbjct: 288 WDMIEDRQAVLADLREKTDRLLPQARGIRAVPISGQTGWGLDKLMQSIIDTDRVWNKRIS 347

Query: 371 FSIPSHKRHLYHLS 384
            +  +       + 
Sbjct: 348 TARLNRWLETQQIQ 361



 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 18/127 (14%)

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK-EGIKRTFLEVENADLILLLKEI---- 308
           TRD    D  L G    I DTAG+ E D+   +     +T   ++ ADL L + +     
Sbjct: 2   TRDRRPGDARLMGLTFTIIDTAGLEEADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGL 61

Query: 309 ----NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELI 355
                +  E+   +    + +  KS+   + +  YD           IS+  G+G+ +L 
Sbjct: 62  TPVDTALAEMLRRRGKPVVLVANKSEARGSDSGFYDAYTLGLGEPTPISAEHGQGMLDLR 121

Query: 356 NKIKSIL 362
           + I   +
Sbjct: 122 DAIVEAI 128


>gi|153823698|ref|ZP_01976365.1| GTP-binding protein Era [Vibrio cholerae B33]
 gi|126518786|gb|EAZ76009.1| GTP-binding protein Era [Vibrio cholerae B33]
          Length = 282

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 31/217 (14%)

Query: 202 DISSHISQGKLGEII--------RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           DI ++ +    G+ +          G+ + I+G  N GKS+L N L  + ++I +  P T
Sbjct: 7   DIDAYFASQSEGKSVVASTPENQHCGF-VAIVGRPNVGKSTLLNNLLGQKISITSRKPQT 65

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---N 309
           TR  +        Y     DT G+  E    + +   +     + + +L+L + E     
Sbjct: 66  TRHRIMGVETDGNYQAIYVDTPGLHIEEKRAINRLMNRAASSSLSDVNLVLFVVEGTHWT 125

Query: 310 SKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL--------------ISSFTGEGL 351
           +  E+ F K    N   +    K D      E   H+              IS+  G+  
Sbjct: 126 ADDEMVFTKLQKANFPVVLCVNKVDQVKDRNEVMLHMLELSKRMQFVDIVPISAKQGKNT 185

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           + L   ++  L       P    + +   +  S+ VR
Sbjct: 186 DVLKKHVRDHLPKAVHHFPEEYVTDRSQRFMASEIVR 222


>gi|83952357|ref|ZP_00961088.1| GTP-binding protein EngA [Roseovarius nubinhibens ISM]
 gi|83836030|gb|EAP75328.1| GTP-binding protein EngA [Roseovarius nubinhibens ISM]
          Length = 479

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 77/187 (41%), Gaps = 29/187 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKS+L N +  ++  +     G TRD +++ ++ +G  +++ DTAG+R+
Sbjct: 191 LQVAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLKMNWDGVPMRVFDTAGMRK 250

Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328
              +    EK  +      V+ A+++++L +     E        ++  +    +    K
Sbjct: 251 KAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVVVAVNK 310

Query: 329 SDLYSTYTEEYD------------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            D+     E+                      +S+ TG GL+ L   I        +++ 
Sbjct: 311 WDIEDEKQEKLRALKEAFERLLPQLRGAPLVTVSAKTGRGLDRLHAAIVKAHDVWNRRVS 370

Query: 371 FSIPSHK 377
            +  +  
Sbjct: 371 TAQLNRW 377



 Score = 83.4 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGI 289
           GKS+LFN L  K +A+V D PG TRD+   +  L      + DTAG+ + TDD ++    
Sbjct: 2   GKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVIDTAGLEDATDDSLQGRMR 61

Query: 290 KRTFLEVENADLILLLKEINS 310
           + T   V+ AD+ L + +  +
Sbjct: 62  RLTERAVDMADICLFVIDART 82


>gi|332140433|ref|YP_004426171.1| GTP-binding protein Era [Alteromonas macleodii str. 'Deep ecotype']
 gi|332141898|ref|YP_004427636.1| GTP-binding protein Era [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550455|gb|AEA97173.1| GTP-binding protein Era [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551920|gb|AEA98638.1| GTP-binding protein Era [Alteromonas macleodii str. 'Deep ecotype']
          Length = 303

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+ ++ 
Sbjct: 11  VAIVGRPNVGKSTLLNRLLGQKVSITSRKPQTTRHRILGIDTDGDYQAIYVDTPGLHQDE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     +    L+L + E    N++ E+   K    N+    I  K D   
Sbjct: 71  KRAINRYMNRAASSSLAEVGLVLFVVEGDRFNAEDEMVLSKVKQANLPCYLIVNKMDKVE 130

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L   +  E+   IS+  G+ ++ +   +   L       P    + +  
Sbjct: 131 DKENFMVHLQKLGEKHPFEHIVPISAKQGKMVDGIRELVAESLPKSEFFFPEDYITDRSS 190

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 191 RFMAAEIIR 199


>gi|289177355|gb|ADC84601.1| HflX [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 523

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 102/253 (40%), Gaps = 26/253 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   I  L+  I       + K G   R G   I ++G++NAGKSSL N L   
Sbjct: 254 EMDRRVIRTRIARLRKQIKEMSGTREVKRGSRRRYGLPTIAVVGYTNAGKSSLTNRLTGS 313

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G L    DT G          E  K T  E+ +ADLI
Sbjct: 314 TELVENALFATLDTAVRRTQTRDGRLYAYVDTVGFVRRLPTNLVEAFKSTLEEIADADLI 373

Query: 303 LLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           + + + +               + I   + +  I +  K+DL      E         H+
Sbjct: 374 VHVVDASHPDPFSQIDAVNEVLQTIDGVERLPVITVFNKADLIDDAKRERLHALAPDAHI 433

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +SS TGEG++ L   ++S+L +    +   +P  +  L  L++   Y  + SL  +D G+
Sbjct: 434 VSSATGEGVDALRADVESMLVDPDVHVEALLPYTEGSL--LAKVREYGRLESLEYRDDGI 491

Query: 403 DIIA-ENLRLASV 414
            + A  + RLA+ 
Sbjct: 492 MLQAFVDERLAAR 504


>gi|6655023|gb|AAD02940.2| GTP-binding protein Era [Bradyrhizobium japonicum]
          Length = 309

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 82/202 (40%), Gaps = 22/202 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           + G+     R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +     
Sbjct: 5   ASGEAPAATRCGF-VALIGAPNVGKSTLVNALVGAKVTIVSRKVQTTRALIRGIVIENNA 63

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----N 319
            + + DT GI      +++  +   +    +ADL+ +L +    I+ + E    K    N
Sbjct: 64  QIILVDTPGIFSPKRRLDRAMVSTAWSGAHDADLVCVLLDAKTGIDEEAEAILAKAASVN 123

Query: 320 IDFIFIGTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            D I +  K DL                       +I++ +G+G+++L + +  ++    
Sbjct: 124 HDKILVINKVDLVQREKLLALAQAANERMPFAKTFMIAAISGDGVDDLRSTLAEMVPPGP 183

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
              P    S     +  ++  R
Sbjct: 184 FLYPEDQMSDAPMRHLAAEITR 205


>gi|291287434|ref|YP_003504250.1| GTP-binding protein Era [Denitrovibrio acetiphilus DSM 12809]
 gi|290884594|gb|ADD68294.1| GTP-binding protein Era [Denitrovibrio acetiphilus DSM 12809]
          Length = 295

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + +AI +  P TTR  +   L  E + +   DT G  +  
Sbjct: 9   ISIMGRPNVGKSTLLNALMGEKIAITSSKPQTTRANIQGILTGEDFQLIFIDTPGYHKAK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNIDF--IFIGTKSD 330
           D + K  +++    +E  D I +L + +          I   +  D     I  K D
Sbjct: 69  DSINKMMVQQAKESLEAVDAIYVLVQPDEFMGPELTSLIKVLEKTDAVKFLIINKVD 125


>gi|167041994|gb|ABZ06731.1| putative GTPase of unknown function [uncultured marine
           microorganism HF4000_141E02]
          Length = 332

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 10/149 (6%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+GY + ++G  N GKS+L NAL  + V+IVT  P TT+  +   + L    + + DT 
Sbjct: 51  YRSGY-VAVIGRPNVGKSTLVNALVGEKVSIVTSKPQTTQINILGIVHLPHAQIMLVDTP 109

Query: 276 GI--RETDDIVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFPK-----NIDFIFIG 326
           G+       +  K+  K T   +  ADL +++ E+N   K++    +     N + I   
Sbjct: 110 GLLSGRGKRLSSKQTRKETRNALAMADLAVVVVEVNRWKKEDDYLMERLGEFNFEKILAV 169

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            K DL+   ++  D L  S T    +E++
Sbjct: 170 NKIDLFKDKSQILDFLAQSSTKGSFKEIV 198


>gi|149192068|ref|ZP_01870293.1| GTP-binding protein Era [Vibrio shilonii AK1]
 gi|148834093|gb|EDL51105.1| GTP-binding protein Era [Vibrio shilonii AK1]
          Length = 329

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 27/213 (12%)

Query: 202 DISSHISQGKLG----EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           DI ++ +         E    G+ + I+G  N GKS+L N +  + ++I +  P TTR  
Sbjct: 12  DIDAYFASSGEATTSAENQHCGF-VAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHR 70

Query: 258 LTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKE 313
           +        Y     DT G+  E    + +   +     + + +L+L L +        E
Sbjct: 71  IMGVDTDGDYQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVLFLVDGTHWTDDDE 130

Query: 314 ISFPK----NIDFIFIGTKSDLYSTYTEEYDHLI--------------SSFTGEGLEELI 355
           +   K    +   I    K D      +   H+               S+  G+  + L 
Sbjct: 131 MVLNKLRKSDFPVILCMNKVDNVKDRNDVMLHMHELSKKMDFVDVVPISAKHGKNTDVLR 190

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             ++  L       P    + +   +  S+ +R
Sbjct: 191 KHVREHLPEAVHHFPEEYVTDRSQRFMASEILR 223


>gi|94989900|ref|YP_598000.1| GTP-binding protein Era [Streptococcus pyogenes MGAS10270]
 gi|189037675|sp|Q1JI67|ERA_STRPD RecName: Full=GTPase Era
 gi|94543408|gb|ABF33456.1| GTP-binding protein era [Streptococcus pyogenes MGAS10270]
          Length = 298

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 7   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK----- 328
             +    ++  +  +   + +L +   + K+        E      I  I +  K     
Sbjct: 67  TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKVH 126

Query: 329 --------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +  LI  +   L   F+  P    +     
Sbjct: 127 PDQLLEQIDDFRSQMDFKEVVPISALEGNNVPTLIKLLTDNLEEGFQYFPEDQITDHPER 186

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 187 FLVSEMIR 194


>gi|156103153|ref|XP_001617269.1| GTP-binding protein [Plasmodium vivax SaI-1]
 gi|148806143|gb|EDL47542.1| GTP-binding protein, putative [Plasmodium vivax]
          Length = 864

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 18/139 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGI 277
             I  +G  N GKSS+ N +   +  IV+ I GTT D + + + ++    + ++ DTAGI
Sbjct: 561 INISFIGKPNTGKSSILNKILNCNRFIVSPIAGTTVDSIDVLVKIKDSDRIYRLIDTAGI 620

Query: 278 RETDD--------IVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----NID 321
           ++             E     RT   ++ +D+ +L+ +     S ++I+  +     N  
Sbjct: 621 QKRKKNVPFNEKTKYEYLLFNRTEKAIKRSDVCILVIDSFNGISSQDINIARKIVQENKS 680

Query: 322 FIFIGTKSDLYSTYTEEYD 340
            I    K DL     + ++
Sbjct: 681 CIICCNKWDLIYNKNDIFN 699



 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 3/96 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK--KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +IIR+   I I+G  N GKS++FN L +  ++ +IV     +TRD +  ++D +GY  ++
Sbjct: 279 KIIRSLPLISIIGRPNVGKSTIFNRLTRKFQEGSIVL-GESSTRDKIYGEVDWDGYKFEV 337

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            DT G+   D+   K+   +  L +  + ++LL+ +
Sbjct: 338 VDTGGLLFEDEKFCKQIRDQIMLALNESSVVLLVVD 373


>gi|260061761|ref|YP_003194841.1| GTP-binding protein Era [Robiginitalea biformata HTCC2501]
 gi|88785893|gb|EAR17062.1| putative GTP-binding protein (cell growth-related) [Robiginitalea
           biformata HTCC2501]
          Length = 295

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 85/187 (45%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I+T    TTR  +   ++ + + +  SDT GI +  
Sbjct: 9   VNIIGNPNVGKSTLMNALVGERLSIITSKAQTTRHRILGIVNGDDFQIVFSDTPGIIKPA 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--KEISFPKN-----IDFIFIGTKSDLYS- 333
             +++  +    L + +AD++L + E+  K  K+ +F +      I  + +  K D    
Sbjct: 69  YGLQESMMDFVRLALVDADVLLYMVEVGEKGLKDEAFAEKIRSSQIPVLLLINKIDTSDQ 128

Query: 334 ------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                        +       IS+    G+ E++++I ++L       P    + +   +
Sbjct: 129 GQLEEQVAFWTEQFPNAEIIPISALERFGVPEVLDRILALLPEAPPYFPKDQLTDRPERF 188

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 189 FVNEIIR 195


>gi|225430700|ref|XP_002264259.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 435

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 86/215 (40%), Gaps = 32/215 (14%)

Query: 205 SHISQGKLGEII-------RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           + +   +L E+        R+GY + +LG  N GKS+L N +  + ++IVTD P TTR  
Sbjct: 117 ALLDDYELEELDFASNPNHRSGY-VAVLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHR 175

Query: 258 LTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEI-NSKKEIS 315
           +        Y + + DT G+ E     ++   +K       NAD +++L +     ++I 
Sbjct: 176 ILGICSGPEYQMILYDTPGVIEKKMHKLDSMMMKNVRSATINADCVVVLVDACKEPQKID 235

Query: 316 ---------FPKNIDFIFIGTKSDLYST-------------YTEEYDHLISSFTGEGLEE 353
                        +  + +  K DL                   +    +S+  G+G+++
Sbjct: 236 EVLEEGVGNLKDKLPTLLVLNKKDLIKPGEIAKKLEWYEKFIDVDEVIPVSAKYGQGVDD 295

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           + + I S L       P  I S     + + + VR
Sbjct: 296 VKDWILSKLPLGPAYYPKDIVSEHPERFFVGEIVR 330


>gi|183602407|ref|ZP_02963773.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis HN019]
 gi|241191239|ref|YP_002968633.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196645|ref|YP_002970200.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218326|gb|EDT88971.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis HN019]
 gi|240249631|gb|ACS46571.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251199|gb|ACS48138.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295794232|gb|ADG33767.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis V9]
          Length = 515

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 102/253 (40%), Gaps = 26/253 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   I  L+  I       + K G   R G   I ++G++NAGKSSL N L   
Sbjct: 246 EMDRRVIRTRIARLRKQIKEMSGTREVKRGSRRRYGLPTIAVVGYTNAGKSSLTNRLTGS 305

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G L    DT G          E  K T  E+ +ADLI
Sbjct: 306 TELVENALFATLDTAVRRTQTRDGRLYAYVDTVGFVRRLPTNLVEAFKSTLEEIADADLI 365

Query: 303 LLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           + + + +               + I   + +  I +  K+DL      E         H+
Sbjct: 366 VHVVDASHPDPFSQIDAVNEVLQTIDGVERLPVITVFNKADLIDDAKRERLHALAPDAHI 425

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +SS TGEG++ L   ++S+L +    +   +P  +  L  L++   Y  + SL  +D G+
Sbjct: 426 VSSATGEGVDALRADVESMLVDPDVHVEALLPYTEGSL--LAKVREYGRLESLEYRDDGI 483

Query: 403 DIIA-ENLRLASV 414
            + A  + RLA+ 
Sbjct: 484 MLQAFVDERLAAR 496


>gi|15601925|ref|NP_244997.1| GTP-binding protein Era [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13959355|sp|Q9CPH8|ERA_PASMU RecName: Full=GTPase Era
 gi|12720268|gb|AAK02144.1| Era [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 306

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 17  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTDGPYQAVYVDTPGLHIEE 76

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     + + DLI+ + +    N   E+   K        +    K D   
Sbjct: 77  KRAINRLMNRAASSAIGDVDLIIFVVDGTHWNEDDEMVLNKLRAAKAPVVLAINKIDNIK 136

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L S +   +   IS+  G+ + EL   ++  L       P    + +  
Sbjct: 137 NKEEMLPFITELTSKFDFAHVVPISAQGGKNIAELEKIVRESLHEGTHHFPEEYVTDRSQ 196

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 197 RFMASEIIR 205


>gi|221194854|ref|ZP_03567911.1| GTP-binding protein Era [Atopobium rimae ATCC 49626]
 gi|221185758|gb|EEE18148.1| GTP-binding protein Era [Atopobium rimae ATCC 49626]
          Length = 307

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 76/189 (40%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  + GKS+L NA  K+ +AI + +  TTR  L   ++   + + I DT G+ +  
Sbjct: 17  VALVGRPSVGKSTLLNACLKEKIAITSPVAQTTRRRLRGVVNGPNFQLVIIDTPGLHKPK 76

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
           D + KE  K    E+ +AD +  L +             K +S  +    + + TK+DL 
Sbjct: 77  DALGKELNKTALGELNDADCVAFLVDATKPVGRGDEWVAKHVSAARASYKLLVITKADLA 136

Query: 333 S--------TYTEEYDHLI-----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                       ++  H       S+     ++  + ++   L    K  P  +      
Sbjct: 137 DQEKVSAQLEAAQKLGHFDDVLVLSATEDFNVQAFVARVAEHLPEGPKWFPDDMDVDASD 196

Query: 380 LYHLSQTVR 388
              +++ +R
Sbjct: 197 EDLVAEFIR 205


>gi|332519776|ref|ZP_08396240.1| GTP-binding protein Era [Lacinutrix algicola 5H-3-7-4]
 gi|332044335|gb|EGI80529.1| GTP-binding protein Era [Lacinutrix algicola 5H-3-7-4]
          Length = 293

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + V +SDT GI +  
Sbjct: 8   VNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGENFQVVLSDTPGIIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPK----NIDFIFIGTKSDLYST 334
             ++   +       ++ADL++ + EI  K+   E  F K     I  + +  K D  + 
Sbjct: 68  YELQASMMDFVKSAFDDADLLIYMVEIGEKELKDEAFFNKITNAKIPVLLLLNKIDKSNQ 127

Query: 335 YTEE-------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
              E                 IS+  G  ++E+ ++I  +L       P    + K   +
Sbjct: 128 VQLEEQVQLWATKVPNAEIIAISALEGFNVKEVFDRIIELLPESPPFYPKDQLTDKPERF 187

Query: 382 HLSQTVR 388
            +++T+R
Sbjct: 188 FINETIR 194


>gi|170699586|ref|ZP_02890626.1| GTP-binding protein Era [Burkholderia ambifaria IOP40-10]
 gi|172060070|ref|YP_001807722.1| GTP-binding protein Era [Burkholderia ambifaria MC40-6]
 gi|170135537|gb|EDT03825.1| GTP-binding protein Era [Burkholderia ambifaria IOP40-10]
 gi|171992587|gb|ACB63506.1| GTP-binding protein Era [Burkholderia ambifaria MC40-6]
          Length = 287

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T     +       DT G +   
Sbjct: 2   IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPGFQTRH 61

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D+IL + E       + K     P  +  + I  K D  + 
Sbjct: 62  STALNRSLNRAVTSTLTSVDVILFVIEAGRFGPDDQKVLDLIPPGMPTLLIANKIDRVTD 121

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               +  +               S+   E ++ L++ IK  L            + +   
Sbjct: 122 KATLFPFMQQMSGLREFTELVPLSAQRPEDIKRLLDTIKPYLPEGEPIYGEDELTDRSSR 181

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 182 FLAAEILR 189


>gi|154253315|ref|YP_001414139.1| GTP-binding protein Era [Parvibaculum lavamentivorans DS-1]
 gi|154157265|gb|ABS64482.1| GTP-binding protein Era [Parvibaculum lavamentivorans DS-1]
          Length = 318

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 25/193 (12%)

Query: 204 SSHISQGKLGE---IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            +H+  G       I R G+ + I+G  NAGKS+L N L    VAIVT    TTR  +  
Sbjct: 8   ETHLENGARDAEAGITRCGF-VAIIGAPNAGKSTLLNQLVGSKVAIVTHKVQTTRSRIRG 66

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-- 318
                   +   DT GI +    +++  +   +    ++DLI+L+ ++ S ++    +  
Sbjct: 67  IAMEGNTQIVFVDTPGIFKPKRRLDRAMVDAAWGGAGDSDLIVLMVDMESGRDSDVDRIL 126

Query: 319 ------NIDFIFIGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIK 359
                     I +  K D             L  T       +IS+  G+G+ +L   + 
Sbjct: 127 EGLKSQGRKAILVLNKVDACPREKLLKTAAALNETGIFTETFMISALKGDGVADLKKYLA 186

Query: 360 SILSNKFKKLPFS 372
            ++       P  
Sbjct: 187 GLMPPGPWHYPED 199


>gi|187924874|ref|YP_001896516.1| GTP-binding protein Era [Burkholderia phytofirmans PsJN]
 gi|187716068|gb|ACD17292.1| GTP-binding protein Era [Burkholderia phytofirmans PsJN]
          Length = 299

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + V+I +    TTR  +T    L+       DT G +   
Sbjct: 14  VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLDDAQYIFVDTPGFQTKH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P ++  + I  K D  S 
Sbjct: 74  SGALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPSVPTLLIANKLDRVSD 133

Query: 335 YTEEYDHLISSFTGEGLEELI-------NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
               +  +          E++       + IK +++     LP   P +        ++ 
Sbjct: 134 KDSLFPFMQQVSALHKFAEIVPLSAKNLDDIKRLMATVKPFLPEGAPIYGED-DLTDRSE 192

Query: 388 RYLEMASLNEK 398
           R+L    L EK
Sbjct: 193 RFLAAEILREK 203


>gi|289642689|ref|ZP_06474829.1| GTP-binding protein Era [Frankia symbiont of Datisca glomerata]
 gi|289507519|gb|EFD28478.1| GTP-binding protein Era [Frankia symbiont of Datisca glomerata]
          Length = 309

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 11/136 (8%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +  + G   R+G+    +G  NAGKS+L NAL    VAI +  P TTR  +   +  +  
Sbjct: 3   ASAEAGAPFRSGF-ACFVGRPNAGKSTLTNALVGSKVAITSGRPQTTRHAVRGIVHRDDA 61

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFP 317
            + + DT G+     ++ +         +   D++      N          + +    P
Sbjct: 62  QLVLVDTPGLHRPRTLLGQRLNDVVRATLSEVDVVAFCVPANEAVGPGDRFIAGELARLP 121

Query: 318 KNIDFIFIGTKSDLYS 333
           K    + + TKSDL S
Sbjct: 122 KRTPLVAVVTKSDLVS 137


>gi|269215578|ref|ZP_06159432.1| GTP-binding protein HflX [Slackia exigua ATCC 700122]
 gi|269131065|gb|EEZ62140.1| GTP-binding protein HflX [Slackia exigua ATCC 700122]
          Length = 437

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 98/263 (37%), Gaps = 27/263 (10%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           E  +Q RL+       L          L   R        F E E       + V   I 
Sbjct: 133 EGRLQVRLAQNQY---LLPRLRGMWTHLASNRMGGGVGSRFGEGESQLEVDRRLVRKRIT 189

Query: 198 FLKNDISSHI---SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            ++ ++       +  +    +   ++I   G++NAGKSSL +AL   DV +  D    T
Sbjct: 190 TIRRELDHLASVRAVQRRSRRLSGVFRIAEAGYTNAGKSSLIHALTGADV-LSYDKLFAT 248

Query: 255 RDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D  T  L L EG    I+DT G  +       E  + T  E+  ADLIL + + +S + 
Sbjct: 249 LDSTTRRLSLPEGRDATITDTVGFIQKLPTNLIEAFRSTLDEISEADLILHVVDASSPRR 308

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTE-------EYDHLISSFTGEGLEEL 354
            +  K            +I  + +  K DL                 L+S+ TGEG++ L
Sbjct: 309 DAQAKAVVETLGLIEAQDIPCMVVCNKVDLLDDEERAELIRQHPDACLVSARTGEGMDAL 368

Query: 355 INKIKSILSNKFKKLPFSIPSHK 377
              I   ++     +  S+P  +
Sbjct: 369 KTAIVERIAAYEVPVVLSVPFDR 391


>gi|78187585|ref|YP_375628.1| GTP-binding protein Era [Chlorobium luteolum DSM 273]
 gi|78167487|gb|ABB24585.1| GTP-binding protein Era [Chlorobium luteolum DSM 273]
          Length = 305

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 26/192 (13%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  NAGKS+L NAL    ++IVT  P TTR  +T     +   V   DT GI E   
Sbjct: 12  SIIGPPNAGKSTLMNALLDCKLSIVTPKPQTTRKRITGIYHDKQMQVVFLDTPGIMEPMQ 71

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKE-------ISFPKNI------DFIFIGTKS 329
            + +  +  T   + +AD+I+ +     K+         +   +         + +  KS
Sbjct: 72  KLHEAMLLATRDTLRDADVIIAMLPFRKKEGPFDRDFAATLQNDWLKTSGKPIVAVFNKS 131

Query: 330 DLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           DL                +       IS+  G  L EL+  ++  L       P    S 
Sbjct: 132 DLVTLKEQSEAEAFIREAWNPAAVLSISALKGVNLPELLEALRPFLPMNQPLYPEDALST 191

Query: 377 KRHLYHLSQTVR 388
               + +S+ +R
Sbjct: 192 APERFFVSEIIR 203


>gi|261405616|ref|YP_003241857.1| GTP-binding protein Era [Paenibacillus sp. Y412MC10]
 gi|261282079|gb|ACX64050.1| GTP-binding protein Era [Paenibacillus sp. Y412MC10]
          Length = 300

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 82/221 (37%), Gaps = 23/221 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             +  ++G+ + I+G  N GKS+L N +  + +AI++D P TTR+ +          V  
Sbjct: 2   QKKQFKSGF-VAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTTPDSQVVF 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFI 323
            DT GI +    +     +     +   +  L L + +           E         I
Sbjct: 61  LDTPGIHKRQSKLGDYMNQTALSTLGEVEAALFLVDASEGIGGGDRYIAEQLQKIKTPII 120

Query: 324 FIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K D         L   Y + +D      IS+  G  +  L+ +I+  L    +  P
Sbjct: 121 LVMNKIDKIEPPALLPLIEQYRKLHDFAEIVPISAKLGSNVNTLLEQIQKYLPPGPQYYP 180

Query: 371 FSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLR 410
               +     +  ++ +R  +   +  E    + +  E++R
Sbjct: 181 EDQVTDHPEQFVCAELIREKILHMTREEVPHSIAVTIEDMR 221


>gi|313905842|ref|ZP_07839200.1| GTP-binding protein Era [Eubacterium cellulosolvens 6]
 gi|313469356|gb|EFR64700.1| GTP-binding protein Era [Eubacterium cellulosolvens 6]
          Length = 304

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 81/204 (39%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + ++G  N GKS+L N L  + +AI +  P TTR+ +    + +   +   DT 
Sbjct: 6   LKSGF-VALIGRPNVGKSTLMNHLIGQKIAITSRKPQTTRNRIQTIYNSDRGQIVFLDTP 64

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGT 327
           GI +  + + +  +      ++N D ++ L E  +          ++     +  I +  
Sbjct: 65  GIHKAKNKLGEYMVYAAESSLKNVDAVMWLIEPGAYVGAAEQHIVQMLDKAGLPVILVIN 124

Query: 328 KSD-LYSTYTEEYDHLISSFTG------------EGLEELINKIKSILSNKFKKLPFSIP 374
           K D +      E       FT               L+ LI+ + S+L    +       
Sbjct: 125 KIDKVKKDVVAETIQTYGKFTRFEDIVAVSAKQSTNLDGLIDSLFSVLPYGPRFFDEDTV 184

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +      ++ +R   + SL E+
Sbjct: 185 TDQPVRQVAAEMIREKTLRSLGEE 208


>gi|283769577|ref|ZP_06342473.1| GTP-binding protein Era [Bulleidia extructa W1219]
 gi|283103845|gb|EFC05231.1| GTP-binding protein Era [Bulleidia extructa W1219]
          Length = 297

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 24/195 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R+G+ + I G  NAGKS+L NAL  + VAIV++   TTR  +   L  E   +  +DT 
Sbjct: 1   MRSGF-VGIAGRPNAGKSTLINALVGEKVAIVSEKSQTTRSEIRGILSREDGQIIFTDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIG 326
           GI +  D +     K  +  +++ D++ L+ + +           + IS  K      I 
Sbjct: 60  GIHKPLDRLGVRMNKEVYSVIQDVDILYLVVDASVPFAKGDAFVLEHISNLKK-PVFLIL 118

Query: 327 TKSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         L   + + Y       +S+     LE+LI    + L       P  +
Sbjct: 119 NKVDRLSKKKVIALLEEWAKRYPFAEYFPLSAKFHLKLEDLIKTTLNYLPEGGYLYPCDL 178

Query: 374 PSHKRHLYHLSQTVR 388
            S     + L++ +R
Sbjct: 179 ISDNALDFRLAEMIR 193


>gi|150010993|gb|ABR57154.1| GTP-binding protein Era [Staphylococcus xylosus]
          Length = 299

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+  N +    +AI++D   TTR+ +   +  E   +   DT GI +  
Sbjct: 9   ISIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTQEDAQIIFLDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-- 331
             +    ++     +   D I+ +  +N           E+          +  K DL  
Sbjct: 69  HKLGDYMMRVATNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKTIKTPIFLVLNKIDLVH 128

Query: 332 -------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     Y    D      IS+  G  ++  IN +KS L    K  P    S     
Sbjct: 129 PDELMPRIEKYKRYLDFTEIVPISALEGHNVDHFINVLKSYLPEGPKYYPDDQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGELIR 196


>gi|91784706|ref|YP_559912.1| GTP-binding protein Era [Burkholderia xenovorans LB400]
 gi|91688660|gb|ABE31860.1| GTP-binding protein Era [Burkholderia xenovorans LB400]
          Length = 299

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + V+I +    TTR  +T    LE       DT G +   
Sbjct: 14  VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLEDAQYIFVDTPGFQTKH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P ++  + I  K D  S 
Sbjct: 74  SGALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPSVPTLLIANKLDRVSD 133

Query: 335 YTEEYDHLISSFTGEGLEELI-------NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
               +  +          E++       + IK +++     LP   P +        ++ 
Sbjct: 134 KDSLFPFMQQVSALHKFAEIVPLSAKHPDDIKRLMATVKPFLPEGAPIYGED-DLTDRSE 192

Query: 388 RYLEMASLNEK 398
           R+L    L EK
Sbjct: 193 RFLAAEILREK 203


>gi|315637675|ref|ZP_07892880.1| GTP-binding protein Era [Arcobacter butzleri JV22]
 gi|315478022|gb|EFU68750.1| GTP-binding protein Era [Arcobacter butzleri JV22]
          Length = 294

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKSSL N L  + +A+V+     TR    I +  E   V   DT GI ET+
Sbjct: 7   VSVVGRPNAGKSSLLNWLVGEKIAMVSHKANATRKRSNIIVMHEDDQVIFIDTPGIHETE 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYST 334
            ++ +  +      + + DLIL L  +  K            KN+  I + TK D  S 
Sbjct: 67  KLLNQYMLDEALKAMGDCDLILYLAPVTDKISYYEDFLEKNKKNVKHILLLTKIDFVSA 125


>gi|219683278|ref|YP_002469661.1| GTP-binding proten HflX [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|219620928|gb|ACL29085.1| GTP-binding proten HflX [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 506

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 102/253 (40%), Gaps = 26/253 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   I  L+  I       + K G   R G   I ++G++NAGKSSL N L   
Sbjct: 237 EMDRRVIRTRIARLRKQIKEMSGTREVKRGSRRRYGLPTIAVVGYTNAGKSSLTNRLTGS 296

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G L    DT G          E  K T  E+ +ADLI
Sbjct: 297 TELVENALFATLDTAVRRTQTRDGRLYAYVDTVGFVRRLPTNLVEAFKSTLEEIADADLI 356

Query: 303 LLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           + + + +               + I   + +  I +  K+DL      E         H+
Sbjct: 357 VHVVDASHPDPFSQIDAVNEVLQTIDGVERLPVITVFNKADLIDDAKRERLHALAPDAHI 416

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +SS TGEG++ L   ++S+L +    +   +P  +  L  L++   Y  + SL  +D G+
Sbjct: 417 VSSATGEGVDALRADVESMLVDPDVHVEALLPYTEGSL--LAKVREYGRLESLEYRDDGI 474

Query: 403 DIIA-ENLRLASV 414
            + A  + RLA+ 
Sbjct: 475 MLQAFVDERLAAR 487


>gi|283853093|ref|ZP_06370348.1| small GTP-binding protein [Desulfovibrio sp. FW1012B]
 gi|283571491|gb|EFC19496.1| small GTP-binding protein [Desulfovibrio sp. FW1012B]
          Length = 405

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 19/170 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I ++G +NAGKSSL NA+  +DVAIV+D+ GTT D +    +L     V   DTAG+ 
Sbjct: 15  LVITLVGRTNAGKSSLLNAMTGQDVAIVSDVAGTTTDPVAKAYELLPLGPVTFYDTAGLD 74

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPK--NIDFIFIGTKSD 330
           +T ++        T   +   D+ +++ E         +  I+  +  ++ F+ +  K+D
Sbjct: 75  DTGELGALRMAA-TKKVLWRTDIAVVVAEAGPGLTEAERAVIADIRRLDVPFLVVFNKTD 133

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
           L S    +              S+ TG+G   +   I ++   +  + P 
Sbjct: 134 LASPPASDLAWCRDQGIRTAEASAATGQGAVAVKEAIMTLAPAEALREPV 183


>gi|207109247|ref|ZP_03243409.1| tRNA modification GTPase TrmE [Helicobacter pylori HPKX_438_CA4C1]
          Length = 168

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 18/169 (10%)

Query: 289 IKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYD 340
           ++++   +EN D+IL + +++   E                 I +  K+DL      E  
Sbjct: 1   MEKSLKSLENCDIILGVFDLSKPLEKEDFNLIETLNRAKKPCIVVLNKNDLAPKLELEIL 60

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLN 396
                     LE      K+ L +  +K+    P     +K  L  L+Q    LE A   
Sbjct: 61  KSHLKIPYSLLETNTLNSKACLKDLGQKISAFFPKLDTQNKLLLTSLAQ-KTALENAITE 119

Query: 397 EKDC-----GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
            ++       L++ + +L  A  +L  +T   +  Q+LD +FS+FC+GK
Sbjct: 120 LQNAKNHLETLELFSYHLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 168


>gi|188997222|ref|YP_001931473.1| GTP-binding protein HflX [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932289|gb|ACD66919.1| GTP-binding protein HflX [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 372

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 108/265 (40%), Gaps = 26/265 (9%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           ++ T+    ++ +  +  +L  +YG    +L+ I   ++      +  +++  + K+ +N
Sbjct: 108 NARTKQAKLQVELAYLQHQLPRVYGGKGKELSRIGGGMKTKGAGEKLGEIKTRTIKDRIN 167

Query: 195 DILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
            I     +I     + +       N  K+ ++G++NAGKSSL   L K+DV I +D    
Sbjct: 168 KIKKQLKEIEKQREEQRKSREDNPNILKVSLVGYTNAGKSSLLKRLTKRDVFI-SDQLFA 226

Query: 254 TRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           T D  T  +        V I+DT G  E       +    T  E+E+AD+IL + +I+ K
Sbjct: 227 TLDTKTSLIYFPDIKKKVLITDTVGFVEDMPSEIMDAFMTTLKEIEDADVILHVIDISDK 286

Query: 312 -------------KEISFPKNIDFIFIGTKS-------DLYSTYTEEYDHLISSFTGEGL 351
                        K++   ++   I +  K        DL      E    IS+  G  +
Sbjct: 287 NCMKKKTTVENVLKQLKL-QDKPIITVFNKIDKVVPSKDLIEEDVMENTITISAEKGWNI 345

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           ++L + +K     K +        +
Sbjct: 346 DKLFDILKKYAKQKEENHGLCFLQN 370


>gi|157737929|ref|YP_001490613.1| GTP-binding protein Era [Arcobacter butzleri RM4018]
 gi|157699783|gb|ABV67943.1| GTP-binding protein Era-like protein [Arcobacter butzleri RM4018]
          Length = 294

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKSSL N L  + +A+V+     TR    I +  E   V   DT GI ET+
Sbjct: 7   VSVVGRPNAGKSSLLNWLVGEKIAMVSHKANATRKRSNIIVMHEDDQVIFIDTPGIHETE 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYST 334
            ++ +  +      + + DLIL L  +  K            KN+  I + TK D  S 
Sbjct: 67  KLLNQYMLDEALKAMGDCDLILYLAPVTDKISYYEDFLEKNKKNVKHILLLTKIDFVSA 125


>gi|312864794|ref|ZP_07725025.1| ribosome biogenesis GTPase Era [Streptococcus downei F0415]
 gi|311099921|gb|EFQ58134.1| ribosome biogenesis GTPase Era [Streptococcus downei F0415]
          Length = 321

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 22/200 (11%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            K     ++G+ + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +
Sbjct: 19  SKNNMTFKSGF-VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDQEQI 77

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNID 321
              DT GI +    +    ++  +  +   + +L +   + ++        E      I 
Sbjct: 78  VFIDTPGIHKPKTALGDFMVESAYSTLREVETVLFMVPADEERGKGDNMIMERLKAAKIP 137

Query: 322 FIFIGTK-------------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
            I +  K              D  S    +    IS+  G  +E L+  +K  L   ++ 
Sbjct: 138 VILVINKIDQVHPDQLLEKIDDFRSQMDFKEIVPISALQGNNIETLMMILKDNLEEGYQY 197

Query: 369 LPFSIPSHKRHLYHLSQTVR 388
            P    +     + +S+ +R
Sbjct: 198 FPEDQITDHPERFLVSEMIR 217


>gi|288573910|ref|ZP_06392267.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569651|gb|EFC91208.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 407

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 19/161 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               +VI G  N+GKSSL N L +   +IV+D PGTT D +   +++     V + DTAG
Sbjct: 8   ERLTLVIYGLRNSGKSSLTNNLLRTSASIVSDRPGTTTDPVIHAMEMGPLGPVSVVDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN----SKKEISFPK----NIDFIFIGTK 328
             + DD +    ++R+  ++E AD++L +   +    +K+E +  K    N+  + + T 
Sbjct: 68  FDDFDDELGSMRVERSERKLETADIVLFVTRGDIPPTAKEETAVEKLRRRNLPCLTVLTF 127

Query: 329 SDLYSTYTEEYDHLISSF--------TGEGLEELINKIKSI 361
           +D  S   +E  H  S F        +G GLE+L   ++  
Sbjct: 128 AD--SGVCDEKRHFASGFRRIAVDNRSGFGLEDLDRALQRF 166


>gi|20807587|ref|NP_622758.1| GTPase [Thermoanaerobacter tengcongensis MB4]
 gi|20516126|gb|AAM24362.1| GTPases [Thermoanaerobacter tengcongensis MB4]
          Length = 428

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 101/268 (37%), Gaps = 18/268 (6%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E   ++ +  +   L  L G    +L+ +   I        + +V     +  +  I   
Sbjct: 135 EGMLQVELAQLKYRLPRLVG-LGGQLSRLGGGIGTRGPGETKLEVDRRHIRNRIKAIEEK 193

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             ++  H +  +          + I+G++NAGKS+L NAL   D A V D    T D   
Sbjct: 194 LEELEKHRNLQRQRRKKNQIPVVAIVGYTNAGKSTLLNALTGAD-AYVEDKLFATLDPTA 252

Query: 260 IDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
             L L  G  V ++DT G          E  K T  EV+ ADL+L + ++ S       K
Sbjct: 253 RKLVLPSGREVILTDTVGFIRKLPHDLVEAFKSTLEEVKYADLLLHVIDVTSPDMDEKIK 312

Query: 319 ------------NIDFIFIGTKSDLYSTYT--EEYDHLISSFTGEGLEELINKIKSILSN 364
                           I +  K DL          D  IS+    GL+ L+  I+  L  
Sbjct: 313 VVEKVLSDLGAIETPRINVYNKIDLLEIVPSGNNRDIYISAKNKIGLDRLLEAIERELFK 372

Query: 365 KFKKLPFSIPSHK-RHLYHLSQTVRYLE 391
           + + + F  P  K R   +L +  + +E
Sbjct: 373 ETEVVSFLFPYEKTREYNYLKERGKVIE 400


>gi|87303080|ref|ZP_01085878.1| GTP-binding protein EngA [Synechococcus sp. WH 5701]
 gi|87282247|gb|EAQ74207.1| GTP-binding protein EngA [Synechococcus sp. WH 5701]
          Length = 455

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 11/126 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
            ++ I+G  N GKSSL N++  +  AIV+ I GTTRD +   ++ EG   K+ DTAGI  
Sbjct: 177 IQLAIIGRPNVGKSSLLNSICGEARAIVSPIRGTTRDTIDTTIEREGKTWKLLDTAGIRR 236

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIF-IGTK 328
            R      E  GI R+F  VE +D+ +L+ +        + +      ++      +  K
Sbjct: 237 RRSVSYGPEYFGINRSFKAVERSDVCVLVIDALDGVTEQDQRVAGRIEEDGRACVIVVNK 296

Query: 329 SDLYST 334
            D    
Sbjct: 297 WDAIEK 302



 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 21/157 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L +   AIV D PG TRD    +        ++ DT G+   D
Sbjct: 6   VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQEGFWGDRRFRVVDTGGLVFDD 65

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTK---- 328
           D     E  ++  L +  A + +++ +          +  +    + +  +    K    
Sbjct: 66  DSEFLPEIREQANLALAEASVAVVIVDGQQGLTGADQAIADWLRGQKVPVLLAVNKCESP 125

Query: 329 -------SDLYSTYTEEYDHLISSFTGEGLEELINKI 358
                  +D +     E  H +S+  G G  +L++K+
Sbjct: 126 DQGLAMAADFWGLGLGE-PHAVSAIHGAGTGDLLDKV 161


>gi|310821558|ref|YP_003953916.1| GTP-binding protein Era [Stigmatella aurantiaca DW4/3-1]
 gi|309394630|gb|ADO72089.1| GTP-binding protein Era [Stigmatella aurantiaca DW4/3-1]
          Length = 324

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 74/202 (36%), Gaps = 26/202 (12%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             +  R+G+   ++G  N GKS+L N L  + +AIV+  P TTR+ +   +      V  
Sbjct: 13  ASKTYRSGF-AALIGRPNVGKSTLLNQLTGEKIAIVSPKPQTTRNRILGVVTRPEGQVAF 71

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLI-----------LLLKEINSKKEISFPK-N 319
            DT GI +    + +  ++      E  DL+           L +   N        K  
Sbjct: 72  IDTPGIHQAKGELNRYMVEVALQAAEEVDLVLFVVDVPGGEKLEVGPGNRMILERLQKLG 131

Query: 320 IDFIFIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKF 366
                +  K D         L   Y  E+       IS+  G+G++ L       L    
Sbjct: 132 KPTFLVINKIDTLPKALILPLIDLYRNEFPFAEVVPISAREGDGVDRLFQVALQHLPEGE 191

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
           +     + + ++    +S+ +R
Sbjct: 192 RIFDEDMLTDQQERTLVSEYIR 213


>gi|76363849|sp|P0C0C0|ERA_STRP9 RecName: Full=GTPase Era
 gi|6456490|gb|AAF09161.1|U31915_1 GTP-binding protein homolog [Streptococcus pyogenes]
          Length = 203

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 21/190 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 7   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK----- 328
             +    ++  +  +   + +L +   + K+        E      I  I +  K     
Sbjct: 67  TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKVH 126

Query: 329 --------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +  LI  +   L   F+  P   P      
Sbjct: 127 PDQLLEQIDDFRSQMDFKEVVPISALEGNNVPNLIKLLTDNLEEGFQYFPEDHPERFLVS 186

Query: 381 YHLSQTVRYL 390
             + + V +L
Sbjct: 187 EMVREKVLHL 196


>gi|76799369|ref|ZP_00781526.1| tRNA modification GTPase trmE [Streptococcus agalactiae 18RS21]
 gi|76585276|gb|EAO61877.1| tRNA modification GTPase trmE [Streptococcus agalactiae 18RS21]
          Length = 89

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 1  MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD-- 57
          +  E +TI A+ST     AI I+R+SG    ++   I + K     +  +L Y   +D  
Sbjct: 14 ITKEFDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPD 73

Query: 58 -GRILDKGLLIVFPSP 72
             ILD+ +L V  +P
Sbjct: 74 KNEILDEVMLGVMLAP 89


>gi|91977123|ref|YP_569782.1| GTP-binding protein Era [Rhodopseudomonas palustris BisB5]
 gi|91683579|gb|ABE39881.1| GTP-binding protein Era [Rhodopseudomonas palustris BisB5]
          Length = 307

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 80/203 (39%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +   G  + + DT G
Sbjct: 13  RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEGGSQIVLVDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           I      +++  +K  +    +ADL+ +L +  S  +                 + +  K
Sbjct: 72  IFAPKRRLDRAMVKTAWTGAHDADLVCVLLDARSGLDEEAETIFGNLANVGHPKVLVINK 131

Query: 329 SDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL                   +   ++S+ +G+G+++L   + + +       P    S
Sbjct: 132 IDLVPREKLLALTQTANQRLHFDETFMVSALSGDGVDDLRRGLAARVPAGPFHYPEDQMS 191

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                +  ++  R      L+++
Sbjct: 192 DAPLRHLAAEITREKIFRKLHQE 214


>gi|297735123|emb|CBI17485.3| unnamed protein product [Vitis vinifera]
          Length = 320

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 86/215 (40%), Gaps = 32/215 (14%)

Query: 205 SHISQGKLGEII-------RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           + +   +L E+        R+GY + +LG  N GKS+L N +  + ++IVTD P TTR  
Sbjct: 2   ALLDDYELEELDFASNPNHRSGY-VAVLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHR 60

Query: 258 LTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEI-NSKKEIS 315
           +        Y + + DT G+ E     ++   +K       NAD +++L +     ++I 
Sbjct: 61  ILGICSGPEYQMILYDTPGVIEKKMHKLDSMMMKNVRSATINADCVVVLVDACKEPQKID 120

Query: 316 ---------FPKNIDFIFIGTKSDLYST-------------YTEEYDHLISSFTGEGLEE 353
                        +  + +  K DL                   +    +S+  G+G+++
Sbjct: 121 EVLEEGVGNLKDKLPTLLVLNKKDLIKPGEIAKKLEWYEKFIDVDEVIPVSAKYGQGVDD 180

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           + + I S L       P  I S     + + + VR
Sbjct: 181 VKDWILSKLPLGPAYYPKDIVSEHPERFFVGEIVR 215


>gi|258404222|ref|YP_003196964.1| GTP-binding protein Era [Desulfohalobium retbaense DSM 5692]
 gi|257796449|gb|ACV67386.1| GTP-binding protein Era [Desulfohalobium retbaense DSM 5692]
          Length = 312

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
             G   R+G  + I+G  NAGKS+L N    + VAIV+  P TTR+ ++  L  +   V 
Sbjct: 9   DYGGTYRSGL-VAIIGPPNAGKSTLLNQFLGQKVAIVSPKPQTTRNQISGILSTDEAQVV 67

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
             DT G+ ++     +  +   +  +  ++ +LL+ +  
Sbjct: 68  FLDTPGVHKSGQRFNRYMVDAAWRALTASEAVLLVLDAG 106


>gi|167765448|ref|ZP_02437561.1| hypothetical protein BACSTE_03838 [Bacteroides stercoris ATCC
           43183]
 gi|167697076|gb|EDS13655.1| hypothetical protein BACSTE_03838 [Bacteroides stercoris ATCC
           43183]
          Length = 293

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 69/163 (42%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I T    TTR  +    + +   +  SDT G+ +  
Sbjct: 7   VNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGVLKPT 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL--- 331
             +++  +  +   + +AD++L + ++       N   E      +  + +  K DL   
Sbjct: 67  YKLQESMLNFSSSALTDADVLLYVTDVVETPDKHNDFVEKVSRMEVPVLLLVNKIDLSNQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                                IS+ T   ++ ++ +IK +L +
Sbjct: 127 EKLVELVEAWKELLPNAEIIPISAATKFNVDYVMKRIKELLPD 169


>gi|261392940|emb|CAX50525.1| putative Era-like GTP-binding protein [Neisseria meningitidis 8013]
 gi|309378208|emb|CBX23152.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 307

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 75/210 (35%), Gaps = 24/210 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +     R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 2   DIETFLAGERAAGGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 60

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLK------EINSKKEI 314
              +       DT G +        + + +     +   D ++ +       + +     
Sbjct: 61  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDADRVVLK 120

Query: 315 SFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELINKI 358
             PK+   I +  K D                + + +       +S+  G  +  L+  I
Sbjct: 121 QLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELI 180

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           K  L       P  + + K   +   + VR
Sbjct: 181 KPYLPESVPMYPEDMVTDKSARFLAMEIVR 210


>gi|257138459|ref|ZP_05586721.1| GTP-binding protein Era [Burkholderia thailandensis E264]
          Length = 287

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    L+       DT G +   
Sbjct: 2   IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYVFVDTPGFQTRH 61

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P     + +  K D  S 
Sbjct: 62  STALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPGTPTLLVANKLDRVSD 121

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               Y                  S+   E ++ L+N IK  L            + +   
Sbjct: 122 KDTLYPFFQKMGELREFAEIVPLSAKHPEDIQRLMNTIKPYLPEGDAIYGEDDLTDRSSR 181

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 182 FLAAEILR 189


>gi|19745599|ref|NP_606735.1| GTP-binding protein Era [Streptococcus pyogenes MGAS8232]
 gi|21909873|ref|NP_664141.1| GTP-binding protein Era [Streptococcus pyogenes MGAS315]
 gi|28896432|ref|NP_802782.1| GTP-binding protein Era [Streptococcus pyogenes SSI-1]
 gi|50913761|ref|YP_059733.1| GTP-binding protein Era [Streptococcus pyogenes MGAS10394]
 gi|56808804|ref|ZP_00366518.1| COG1159: GTPase [Streptococcus pyogenes M49 591]
 gi|71903042|ref|YP_279845.1| GTP-binding protein Era [Streptococcus pyogenes MGAS6180]
 gi|94988021|ref|YP_596122.1| GTP-binding protein Era [Streptococcus pyogenes MGAS9429]
 gi|94991907|ref|YP_600006.1| GTP-binding protein Era [Streptococcus pyogenes MGAS2096]
 gi|139474287|ref|YP_001129003.1| GTP-binding protein Era [Streptococcus pyogenes str. Manfredo]
 gi|209558959|ref|YP_002285431.1| GTP-binding protein Era [Streptococcus pyogenes NZ131]
 gi|306827874|ref|ZP_07461142.1| GTP-binding protein Era [Streptococcus pyogenes ATCC 10782]
 gi|54037044|sp|P64088|ERA_STRP8 RecName: Full=GTPase Era
 gi|54040764|sp|P64087|ERA_STRP3 RecName: Full=GTPase Era
 gi|73919338|sp|Q5XDG3|ERA_STRP6 RecName: Full=GTPase Era
 gi|123640374|sp|Q48UW6|ERA_STRPM RecName: Full=GTPase Era
 gi|189037673|sp|Q1JD46|ERA_STRPB RecName: Full=GTPase Era
 gi|189037674|sp|Q1JN21|ERA_STRPC RecName: Full=GTPase Era
 gi|189037677|sp|A2RG20|ERA_STRPG RecName: Full=GTPase Era
 gi|226741243|sp|B5XK74|ERA_STRPZ RecName: Full=GTPase Era
 gi|19747725|gb|AAL97234.1| putative GTP-binding protein [Streptococcus pyogenes MGAS8232]
 gi|21904060|gb|AAM78944.1| putative GTP-binding protein [Streptococcus pyogenes MGAS315]
 gi|28811683|dbj|BAC64615.1| putative GTP binding protein [Streptococcus pyogenes SSI-1]
 gi|50902835|gb|AAT86550.1| GTP-binding protein era [Streptococcus pyogenes MGAS10394]
 gi|71802137|gb|AAX71490.1| putative GTP-binding protein [Streptococcus pyogenes MGAS6180]
 gi|94541529|gb|ABF31578.1| GTP-binding protein [Streptococcus pyogenes MGAS9429]
 gi|94545415|gb|ABF35462.1| GTP-binding protein era [Streptococcus pyogenes MGAS2096]
 gi|134272534|emb|CAM30799.1| GTP-binding protein Era homolog [Streptococcus pyogenes str.
           Manfredo]
 gi|209540160|gb|ACI60736.1| GTP-binding protein Era [Streptococcus pyogenes NZ131]
 gi|304429922|gb|EFM32963.1| GTP-binding protein Era [Streptococcus pyogenes ATCC 10782]
          Length = 298

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 7   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK----- 328
             +    ++  +  +   + +L +   + K+        E      I  I +  K     
Sbjct: 67  TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKVH 126

Query: 329 --------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +  LI  +   L   F+  P    +     
Sbjct: 127 PDQLLEQIDDFRSQMDFKEVVPISALEGNNVPTLIKLLTDNLEEGFQYFPEDQITDHPER 186

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 187 FLVSEMVR 194


>gi|309388705|gb|ADO76585.1| iron-only hydrogenase maturation protein HydF [Halanaerobium
           praevalens DSM 2228]
          Length = 415

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 10/151 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           +   I + G  N GKSSL N L  +D+A+V+  PGTT D +   ++L     V I DTAG
Sbjct: 8   DRPHIAVFGRRNVGKSSLINRLTNQDLALVSSQPGTTTDPVYKAMELLPIGPVMIIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISF--PKNIDFIFIGTK 328
           I +  ++     IK+T   +   DL LL+           +K I     KNI F+ I  K
Sbjct: 68  IDDQGELGAMR-IKKTKEIMRKTDLALLVISAAQGAGDFERKLIKDFKEKNIPFLTILNK 126

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
            D+      E   L S      L+  +  IK
Sbjct: 127 IDILKDLNSEQVELKSELKDFFLKNNLEVIK 157


>gi|92117773|ref|YP_577502.1| GTP-binding protein Era [Nitrobacter hamburgensis X14]
 gi|91800667|gb|ABE63042.1| GTP-binding protein Era [Nitrobacter hamburgensis X14]
          Length = 305

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 82/217 (37%), Gaps = 27/217 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +      + + DT G
Sbjct: 11  RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVVENNAQIILVDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTK 328
           I      +++  +   +    +ADL+  L +    ++ + ++   K        I +  K
Sbjct: 70  IFAPKRRLDRAMVSTAWSGAHDADLVCALLDARAGVDDEADVILTKLAGVAHPKILVLNK 129

Query: 329 SDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL                   E   ++S+ +G+G+++L   +   +       P    S
Sbjct: 130 IDLVPREKLLALASAANGRMAFEDTFMVSALSGDGVDDLRRALAERVPEGPFHYPEDQMS 189

Query: 376 HK--RHLYH---LSQTVRYLEMASLNEKDCGLDIIAE 407
               RHL       +  R+L      +     D   E
Sbjct: 190 DAPLRHLAAEITREKIYRHLHQELPYQSTVETDTWTE 226


>gi|296127654|ref|YP_003634906.1| small GTP-binding protein [Brachyspira murdochii DSM 12563]
 gi|296019470|gb|ADG72707.1| small GTP-binding protein [Brachyspira murdochii DSM 12563]
          Length = 394

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 22/167 (13%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAG 276
           N   I I G  NAGKSS+ NA+A +DVAIV+D  GTT D +   +++       I DTAG
Sbjct: 8   NRTHIAIFGRRNAGKSSIINAIANQDVAIVSDTAGTTTDPVKKAIEINAIGACVIVDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPK-----NIDFIFIG 326
             +  ++     I +T   +E+AD+ LL+ +      +   E+ +        I  I + 
Sbjct: 68  FDDEGELGALR-IHKTRKIMESADIALLVFDSSFINNDYLLELKWKNELVSLEIPVIAVL 126

Query: 327 TKSDLYSTYTEEYDHLISSFTGE----------GLEELINKIKSILS 363
            K DL   Y     ++   F  E           ++ LI  IKS + 
Sbjct: 127 NKIDLNDNYKNIEQNIKEMFDLEVVSISANSRVNIDNLIESIKSSIP 173


>gi|77411686|ref|ZP_00788025.1| GTP-binding protein Era [Streptococcus agalactiae CJB111]
 gi|77162258|gb|EAO73230.1| GTP-binding protein Era [Streptococcus agalactiae CJB111]
          Length = 299

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK----- 328
             +    ++  +  +   + +L +   + K+        E      I  I +  K     
Sbjct: 68  TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKVH 127

Query: 329 --------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +  LI  +   L   F+  P    +     
Sbjct: 128 PDQLLEQIDDFRSQMDFKEVVPISALQGNNVSTLIKLLTDNLEEGFQYFPEDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 188 FLVSEMVR 195


>gi|256545276|ref|ZP_05472641.1| GTPase [Anaerococcus vaginalis ATCC 51170]
 gi|256399103|gb|EEU12715.1| GTPase [Anaerococcus vaginalis ATCC 51170]
          Length = 380

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 5/118 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
             + +V+LG +N+GKSS  N +  +DV+IV+   GTT D +   +++  +  V   DTAG
Sbjct: 7   ERFSLVLLGKTNSGKSSFLNYITDQDVSIVSSQKGTTTDPIKKSMEIHDFGPVLFFDTAG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN---IDFIFIGTKSDL 331
             +  ++ EK  I++T   +E ADLIL    +  +    F       + IFI +K DL
Sbjct: 67  FDDDTNLYEKR-IEKTKKTIEKADLILYFLSMEDELNDIFKLKKEYKNIIFIASKQDL 123


>gi|291302081|ref|YP_003513359.1| GTP-binding protein Era [Stackebrandtia nassauensis DSM 44728]
 gi|290571301|gb|ADD44266.1| GTP-binding protein Era [Stackebrandtia nassauensis DSM 44728]
          Length = 298

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 87/216 (40%), Gaps = 25/216 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R G+    +G  NAGKS+L NA+    +AI ++ P TTR V+   L      + + DT 
Sbjct: 5   YRAGF-ACFVGRPNAGKSTLTNAIIGSKIAITSNRPQTTRHVVRGILHRPDSQLILVDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIG 326
           G  +  +++ K   +         D+I L    N K         +EI+  +    + + 
Sbjct: 64  GYHKPKNVLGKRLNEEVRETWSEVDVIGLCIPANEKIGPGDRYITREIT-AQKAKVVAVV 122

Query: 327 TKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           TK DL S                       S+ +GE ++ L++ +   L    +  P  +
Sbjct: 123 TKIDLVSKTDVAKQLMAVNDMADFADIVPCSAVSGEQVDVLVDVLSKYLPTSPQLYPDDM 182

Query: 374 PSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAEN 408
            + +     +++ VR   +  + +E    + ++ E+
Sbjct: 183 ITDEPERVMIAELVREAALEGVRDELPHSIAVVIED 218


>gi|299135101|ref|ZP_07028292.1| GTP-binding protein Era [Afipia sp. 1NLS2]
 gi|298590078|gb|EFI50282.1| GTP-binding protein Era [Afipia sp. 1NLS2]
          Length = 306

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 24/196 (12%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +     R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +  +   +
Sbjct: 5   SEQNSPTRCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEDNAQI 63

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPK----NID 321
            + DT GI      +++  +   +    +AD++ +L +     + + +  F K       
Sbjct: 64  VLVDTPGIFTPKRRLDRAMVSTAWSGAHDADMVCVLLDARAGLDEEADAIFAKLEAVKHP 123

Query: 322 FIFIGTKSDLYS-------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
              +  K DL +                 +   +I++ +G+G+++L   +   +      
Sbjct: 124 KFLVINKIDLVAREKLLALAQKANERIAFKQTFMIAAISGDGVDDLRRALAEAMPEGPYH 183

Query: 369 LPFSIPSHK--RHLYH 382
            P    S    RHL  
Sbjct: 184 YPEDQMSDAPLRHLAA 199


>gi|251781922|ref|YP_002996224.1| GTP-binding protein Era [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390551|dbj|BAH81010.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 298

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 7   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK----- 328
             +    ++  +  +   + +L +   + K+        E      I  I +  K     
Sbjct: 67  TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKVH 126

Query: 329 --------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +  LI  +   L   F+  P    +     
Sbjct: 127 PDQLLAQIDDFRSQMEFKEVVPISALEGNNVPTLIKLLTDNLEEGFQYFPEDQITDHPER 186

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 187 FLVSEMIR 194


>gi|94993785|ref|YP_601883.1| GTP-binding protein Era [Streptococcus pyogenes MGAS10750]
 gi|189037676|sp|Q1J822|ERA_STRPF RecName: Full=GTPase Era
 gi|94547293|gb|ABF37339.1| GTP-binding protein era [Streptococcus pyogenes MGAS10750]
          Length = 298

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 7   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK----- 328
             +    ++  +  +   + +L +   + K+        E      I  I +  K     
Sbjct: 67  TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKVH 126

Query: 329 --------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +  LI  +   L   F+  P    +     
Sbjct: 127 PDQLLAQIDDFRSQMEFKEVVPISALEGNNVPTLIKLLTDNLEEGFQYFPEDQITDHPER 186

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 187 FLVSEMIR 194


>gi|219849958|ref|YP_002464391.1| GTP-binding proten HflX [Chloroflexus aggregans DSM 9485]
 gi|219544217|gb|ACL25955.1| GTP-binding proten HflX [Chloroflexus aggregans DSM 9485]
          Length = 461

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 90/244 (36%), Gaps = 27/244 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++     +  +  +     D+  H    +          I ++G++NAGKS+L NA+   
Sbjct: 199 EIDRRLIERRIAWLKEQLADVHRHRELYRQRRRQTGVPIIALVGYTNAGKSTLLNAMTGA 258

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV +  D    T D  T  + L G  V + +DT G  +          + T  E+E ADL
Sbjct: 259 DV-LAEDKLFATLDPTTRQVLLPGNTVALMTDTVGFIQKLPPQLIAAFRATLEEIEEADL 317

Query: 302 ILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLI------ 343
           +L + ++  +      +            +   + +  K DL    T E    I      
Sbjct: 318 LLHVVDVTHRNAQEHAQTVEQTLRELKVDHKPILTVLNKIDLLEGATAEGIDQIAAEMGL 377

Query: 344 -------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                  S+  G GL+ L  +I + L+ +  ++   IP  +  L  L +    +E    +
Sbjct: 378 PGDIVAVSARRGWGLQTLGERIVATLAQRMVRVDALIPYQRNDLVALWRQRGVIEFEEFS 437

Query: 397 EKDC 400
               
Sbjct: 438 SDGA 441


>gi|21673128|ref|NP_661193.1| GTP-binding protein Era [Chlorobium tepidum TLS]
 gi|21646203|gb|AAM71535.1| GTP-binding protein, Era/ThdF family [Chlorobium tepidum TLS]
          Length = 305

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 26/194 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            +  +G  NAGKS+L N L    ++IVT  P TTR  +T     +   + I DT GI + 
Sbjct: 10  HVTFVGAPNAGKSTLLNRLLDHKLSIVTPKPQTTRKKITGIYHDDRSQIIILDTPGIMDP 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-------------PKNIDFIFIGT 327
              + +  ++ T   +  +D+I+ L       E                P    F+    
Sbjct: 70  KQSLHESMLEITRRSLRESDVIVALIPFQKGDEPIDRKFASELIEQWVKPTGKPFVIALN 129

Query: 328 KSDL-------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K+DL              S Y       +S+ TG  + EL+  ++ +L       P  I 
Sbjct: 130 KADLVPEETAKEAQTEIISKYKPVATLALSALTGGNIPELVELLRPLLPFDEPIWPDDIL 189

Query: 375 SHKRHLYHLSQTVR 388
           S +   + + + +R
Sbjct: 190 STEPERFFVGEIIR 203


>gi|218887297|ref|YP_002436618.1| GTP-binding protein Era [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226741205|sp|B8DQN1|ERA_DESVM RecName: Full=GTPase Era
 gi|218758251|gb|ACL09150.1| GTP-binding protein Era [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 307

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 87/230 (37%), Gaps = 42/230 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + +LG  NAGKS+L N+     VAIVT    TTR+ +   L      V   DT GI + 
Sbjct: 10  WVALLGPPNAGKSTLLNSALGHKVAIVTPRAQTTRNQIVGILSEPDAQVIFMDTPGIHQQ 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------------SKKEISFPKNIDFIFIG 326
              + K  ++  +  + +AD+IL++ + +                 +    +    I   
Sbjct: 70  RGRMNKILLQTAWQSMHSADVILVMLDADLYIKKPDFLENDVKPLMDAVAAEERPVIVAV 129

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILS--------N 364
            K DL+                + +     +S+   +GL EL+  +KS L         +
Sbjct: 130 NKVDLFRDKSKMLPLFIELQKLWPKAEVFPVSALKRDGLPELVKLVKSKLPVAPALYPED 189

Query: 365 KFKKLPFSI----PSHKRHLYHLSQTVRYLEMASLN--EKDCGLDIIAEN 408
           +   LP          ++    L Q + Y     +   +++ G D++  +
Sbjct: 190 QLSTLPVRFMAAEIVREKLFLALRQELPYSVAVEIEKWDEEEGRDLVTIH 239


>gi|323126738|gb|ADX24035.1| GTP-binding protein Era [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 259

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 7   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK----- 328
             +    ++  +  +   + +L +   + K+        E      I  I +  K     
Sbjct: 67  TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKVH 126

Query: 329 --------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +  LI  +   L   F+  P    +     
Sbjct: 127 PDQLLEQIDDFRSQMDFKEVVPISALEGNNVPTLIKLLTDNLEEGFQYFPEDQITDHPER 186

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 187 FLVSEMVR 194


>gi|325285624|ref|YP_004261414.1| GTP-binding protein Era-like-protein [Cellulophaga lytica DSM 7489]
 gi|324321078|gb|ADY28543.1| GTP-binding protein Era-like-protein [Cellulophaga lytica DSM 7489]
          Length = 294

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ + + V +SDT GI +  
Sbjct: 8   VNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGDDFQVILSDTPGIIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLYST 334
             ++   +       E+AD+++ + EI     K E  F K     I  + +  K D    
Sbjct: 68  YELQSSMMDFVKTAFEDADILIYMVEIGEKALKDEAFFNKLKNSKIPVLLLLNKIDASEQ 127

Query: 335 YTEE-------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
              E               H IS+     ++E+  +I  +L       P    + K   +
Sbjct: 128 EKLEEQVQYWQEQLPTAEIHPISALMNFNVKEVFLRIIELLPLSPAYYPKDQLTDKPERF 187

Query: 382 HLSQTVR 388
            +++T+R
Sbjct: 188 FVNETIR 194


>gi|313114169|ref|ZP_07799721.1| GTP-binding protein Era [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623578|gb|EFQ06981.1| GTP-binding protein Era [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 295

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 71/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N L  + VAIVT  P TTR  +T  +        + DT G+ +  
Sbjct: 1   MAVIGRPNVGKSSLTNLLVGEKVAIVTSKPQTTRTRITGVITRGPLQYVLLDTPGVHKAR 60

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKK----EISFPKNIDFIFIGTKSDLYS 333
           + + K   K     + + D+ ++L E    +N  +    ++        I +  K+DL  
Sbjct: 61  NKLGKRMDKTASDSIADVDVSMMLFEPYGALNESEMVLVDMLRSSGGPAIAVINKTDLVK 120

Query: 334 TYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +              +  + IS    +G E L + +                +    
Sbjct: 121 EPADLEARKEELKALGVFDDIYTISVRDNDGCEVLFDALSRYAVEGPHYFDDDAYTDMPE 180

Query: 380 LYHLSQTVR 388
              +++ +R
Sbjct: 181 KELVAEVIR 189


>gi|258622344|ref|ZP_05717369.1| GTP-binding protein [Vibrio mimicus VM573]
 gi|262170591|ref|ZP_06038269.1| GTP-binding protein Era [Vibrio mimicus MB-451]
 gi|258585360|gb|EEW10084.1| GTP-binding protein [Vibrio mimicus VM573]
 gi|261891667|gb|EEY37653.1| GTP-binding protein Era [Vibrio mimicus MB-451]
          Length = 324

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 30/216 (13%)

Query: 202 DISSHISQGKLG-------EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI ++ +    G       E    G+ + I+G  N GKS+L N L  + ++I +  P TT
Sbjct: 7   DIDAYFASQSEGQTVTSTPENQHCGF-VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTT 65

Query: 255 RDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NS 310
           R  +        Y     DT G+  E    + +   +     + + +L+L + E     +
Sbjct: 66  RHRIMGVETDGNYQAIYVDTPGLHIEEKRAINRLMNRAASSSLSDVNLVLFVVEGTHWTA 125

Query: 311 KKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL--------------ISSFTGEGLE 352
             E+ F K    N   +    K D      E   H+              IS+  G+  +
Sbjct: 126 DDEMVFNKLQKANFPVVLCVNKVDQVKDRNEVMLHMLELSKRMQFVDIVPISAKQGKNTD 185

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            L   ++  L       P    + +   +  S+ VR
Sbjct: 186 VLKKHVRDHLPKAVHHFPEEYVTDRSQRFMASEIVR 221


>gi|88607820|ref|YP_504957.1| GTP-binding protein Era [Anaplasma phagocytophilum HZ]
 gi|88598883|gb|ABD44353.1| GTP-binding protein Era [Anaplasma phagocytophilum HZ]
          Length = 305

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 26/228 (11%)

Query: 210 GKLGEIIRNGYK----IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           G+  EI   G      + ++G +NAGKS+L N L     +IVT+   TTR  +   L+  
Sbjct: 6   GERVEIENTGLMKCSLVAVVGMTNAGKSTLINKLVGFKASIVTNKVHTTRVKMNSVLNEG 65

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------- 318
              +  +DT GI      +EK  +K  ++ ++ AD+++L+ +   +  +   K       
Sbjct: 66  NVQLVFTDTPGIFSPKTKLEKFIVKNAWMSMKGADMVILVLDAKRRICVHVEKIIKRLQR 125

Query: 319 -NIDFIFIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
            N+  I +  K DL                +  +    +SS  G G+ +LI+ ++    +
Sbjct: 126 DNVASIAVINKMDLLDEGELATFAERVQLLHKFDRVFTVSSLYGTGVRDLIDYLQESACD 185

Query: 365 KFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
                P           +    T   L +A   E    L ++ E +  
Sbjct: 186 GPWLYPEEYRTDATLEFFAAEITREKLYLALRQELPYSLSVVTEQIEE 233


>gi|16800567|ref|NP_470835.1| GTP-binding protein Era [Listeria innocua Clip11262]
 gi|21263591|sp|Q92BP8|ERA_LISIN RecName: Full=GTPase Era
 gi|16413972|emb|CAC96730.1| lin1499 [Listeria innocua Clip11262]
 gi|313618893|gb|EFR90758.1| GTP-binding protein Era [Listeria innocua FSL S4-378]
 gi|313623743|gb|EFR93885.1| GTP-binding protein Era [Listeria innocua FSL J1-023]
          Length = 301

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 80/211 (37%), Gaps = 23/211 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   +  
Sbjct: 1   MSEPFKSGF-VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVFTTDESQIIF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFI 323
            DT GI +    +    +K      +  DLI  + + +       +  I   KN      
Sbjct: 60  IDTPGIHKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVF 119

Query: 324 FIGTKSDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K DL S                 E    IS+  G  +  L+ +  + L       P
Sbjct: 120 LLINKIDLISPEDLIKLIEQYRELMDFEEIIPISALEGNNVPNLLEQTNANLEIGPMYYP 179

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
               +     + +S+ +R  ++  L  ++  
Sbjct: 180 KDQITDHPERFIISELIRE-QVLQLTREEVP 209


>gi|225010005|ref|ZP_03700477.1| GTP-binding protein Era [Flavobacteria bacterium MS024-3C]
 gi|225005484|gb|EEG43434.1| GTP-binding protein Era [Flavobacteria bacterium MS024-3C]
          Length = 295

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +  
Sbjct: 9   VNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGEDFQMILSDTPGIIKPA 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLY-- 332
             ++   +       E+AD+++ + E+     K E+ F K     I  + +  K D+   
Sbjct: 69  YELQASMMDFVKSAFEDADILVYMVELGEKTLKDELFFKKLQGSKIPVLLLLNKMDISEQ 128

Query: 333 -----------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                              H IS+     ++E+  ++  ++       P    + K   +
Sbjct: 129 SILEEQIAYWQEQLPNAEIHPISALHNFNVKEVFLRLVELMPAAPPYYPKDQLTDKPERF 188

Query: 382 HLSQTVR 388
            +++T+R
Sbjct: 189 FVNETIR 195


>gi|73662498|ref|YP_301279.1| GTP-binding protein Era [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|82592828|sp|Q49Y10|ERA_STAS1 RecName: Full=GTPase Era
 gi|72495013|dbj|BAE18334.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 299

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+  N +    +AI++D   TTR+ +   +  E   +   DT GI +  
Sbjct: 9   ISIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTQEDAQIIFLDTPGIHKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-- 331
             +    ++     +   D I+ +  +N           E+          +  K DL  
Sbjct: 69  HKLGDYMMRVATNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKTIKTPVFLVLNKIDLVH 128

Query: 332 -------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     Y +  D      IS+  G  ++  IN IKS L    K  P    S     
Sbjct: 129 PDELMPRIEKYKKYMDFTEIVPISALEGLNVDHFINVIKSYLPEGPKYYPDDQISDHPEQ 188

Query: 381 YHLSQTVR 388
           + + + +R
Sbjct: 189 FVVGELIR 196


>gi|225870931|ref|YP_002746878.1| GTP-binding protein Era homolog [Streptococcus equi subsp. equi
           4047]
 gi|254783664|sp|C0MBF0|ERA_STRE4 RecName: Full=GTPase Era
 gi|225700335|emb|CAW94640.1| GTP-binding protein Era homolog [Streptococcus equi subsp. equi
           4047]
          Length = 298

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +A+++D   TTR+ +      E   +   DT GI +  
Sbjct: 7   VAILGRPNVGKSTFLNHVMGQKIAVMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK----- 328
             +    ++  +  +   + +L +   + K+        E      I  I +  K     
Sbjct: 67  TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAARIPVILVINKIDKVH 126

Query: 329 --------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +E L+  +K  L   F+  P    +     
Sbjct: 127 PDQLLEQIDDFRSQMDFKEIVPISALQGNNVETLVQLLKDNLEEGFQYFPEDQITDHPER 186

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 187 FLVSEMVR 194


>gi|320353707|ref|YP_004195046.1| iron-only hydrogenase maturation protein HydF [Desulfobulbus
           propionicus DSM 2032]
 gi|320122209|gb|ADW17755.1| iron-only hydrogenase maturation protein HydF [Desulfobulbus
           propionicus DSM 2032]
          Length = 416

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 18/171 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  N GKSSL NA+ ++ VAIV+++ GTT D +   ++L     V   DTAG+ 
Sbjct: 11  LHIGLFGRRNVGKSSLLNAITRQQVAIVSNVAGTTTDPVEKPMELLPLGPVLFIDTAGVD 70

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSD- 330
           +   + E   I RT    +  DL +L+                   + +  + +  K D 
Sbjct: 71  DVGALGEMR-IARTRAVFDRTDLGILVAAGGEWGSFETELLAALTARQVPVLVVMNKLDQ 129

Query: 331 ------LYSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                 L +    +       ++  GEG+ EL   I +     F   P  I
Sbjct: 130 GRASDTLTAELAAKKIPLVHTAALNGEGIAELKQAIVAQTPADFLTSPAII 180


>gi|310778258|ref|YP_003966591.1| iron-only hydrogenase maturation protein HydF [Ilyobacter
           polytropus DSM 2926]
 gi|309747581|gb|ADO82243.1| iron-only hydrogenase maturation protein HydF [Ilyobacter
           polytropus DSM 2926]
          Length = 409

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 14/156 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  N GKS+L NAL  +++AIV++  GTT D +   +++       I DTAG+ 
Sbjct: 13  LHIAIFGKRNMGKSTLINALTGQNLAIVSEYAGTTTDPVYKAMEILPIGPCVIIDTAGLD 72

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEISF--PKNIDFIFIGTKSDL 331
           +  D+ E   +K++   ++  D+ LL           ++ I     KNI FI +  K D+
Sbjct: 73  DLGDLGELR-VKKSLEVLKKTDIALLTVTGEGFSDFDREIIKLLEEKNIPFITVINKKDI 131

Query: 332 Y---STYTEEYDHLIS--SFTGEGLEELINKIKSIL 362
               S +TEE              L+E I+ +K ++
Sbjct: 132 IPANSEFTEELKIKNIPYVAVSAQLKEEIHTLKELI 167


>gi|301511106|ref|ZP_07236343.1| GTP-binding protein Era [Acinetobacter baumannii AB058]
          Length = 297

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 75/206 (36%), Gaps = 24/206 (11%)

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIV 284
           G  N GKS+L N L  + ++I +  P TTR  +      E       DT G+ + +   +
Sbjct: 1   GRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKEVRAI 60

Query: 285 EKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYSTYTE 337
            K   +     + + +L+L + +        ++   K    ++  I +  K+D +    E
Sbjct: 61  NKMMNRAAHSALRDVNLVLFVIDAHKWTQNDDLVLEKLKNADMPVILVINKADTFGDKRE 120

Query: 338 EYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
               +               S+  G  LE L   I+  L  +     F   + +   +  
Sbjct: 121 ILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITDRSERFLA 180

Query: 384 SQTVRYLEMASLNEKDCGLDI-IAEN 408
           S+ +R   M  L E +   D+ +   
Sbjct: 181 SEIIREKIMRQLGE-ELPYDLTVQIE 205


>gi|325849572|ref|ZP_08170810.1| ribosome biogenesis GTPase Era [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480053|gb|EGC83130.1| ribosome biogenesis GTPase Era [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 293

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 91/201 (45%), Gaps = 22/201 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + ++G +N GKS+L   +  + ++I+++ P TTRD + I  + E   +   DT 
Sbjct: 1   MKSGF-VSVVGRANVGKSTLMEKILGEKISIISNKPQTTRDEIKIIYNDENSQIIFLDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIG--T 327
           GI+   + +++  ++ +   ++++D++  + + +       K  +   + I    I    
Sbjct: 60  GIQTPRNKLQEHLLEVSEDSLKDSDIVTFIVDNSLTIGRLDKMILDLLEKIKVPKILLIN 119

Query: 328 KSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL                   +Y   IS+   E +E+ I  IK IL       P  + 
Sbjct: 120 KCDLLEEGEIDQIKKTYIGLNAFDYIIPISALNDENIEKYIQTIKEILPEGPLYYPSDMI 179

Query: 375 SHKRHLYHLSQTVRYLEMASL 395
           + K   + +S+ +R   + +L
Sbjct: 180 TDKNERFIVSEIIREKALRNL 200


>gi|254490819|ref|ZP_05104002.1| GTP-binding protein Era [Methylophaga thiooxidans DMS010]
 gi|224463991|gb|EEF80257.1| GTP-binding protein Era [Methylophaga thiooxydans DMS010]
          Length = 301

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 24/195 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + I+G  N GKS+L N +  + + I +  P TTR  +      +       DT G
Sbjct: 7   RSGY-VAIIGRPNVGKSTLINRILGQKLCITSRRPQTTRHRILGIKTNDSGQFIYVDTPG 65

Query: 277 I-RETDDIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFIGT 327
           +  +    + +   +     +E+ D+IL +         +    K +        I +  
Sbjct: 66  MHSDNKKAMNRYMNRAAASSIEDVDVILFVVEGLKWTDEDKRVLKRLQQDARCPVILVLN 125

Query: 328 KSD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K+D              L + +       +S+  G   + L  +I  ++           
Sbjct: 126 KADKLDDKAALLPQIQELAAQFDFAAVVPVSARKGMNTDLLEQEIAKLMPEGEMIFDEDQ 185

Query: 374 PSHKRHLYHLSQTVR 388
            + +   +  S+ VR
Sbjct: 186 LTDRSSRFLASEIVR 200


>gi|329962636|ref|ZP_08300584.1| ribosome biogenesis GTPase Era [Bacteroides fluxus YIT 12057]
 gi|328529667|gb|EGF56565.1| ribosome biogenesis GTPase Era [Bacteroides fluxus YIT 12057]
          Length = 305

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 21/149 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I T    TTR  +    + +   +  SDT G+ + +
Sbjct: 19  VNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGVLKPN 78

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++       N   E      +  + +  K DL   
Sbjct: 79  YKLQESMLNFSTSALADADVLLYVTDVVETPDKHNDFVEKVARMEVPVLLLVNKIDLS-- 136

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILS 363
                         E L EL+   K +L 
Sbjct: 137 ------------NQEKLVELVEAWKELLP 153


>gi|258626728|ref|ZP_05721550.1| GTP-binding protein [Vibrio mimicus VM603]
 gi|258580984|gb|EEW05911.1| GTP-binding protein [Vibrio mimicus VM603]
          Length = 324

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 30/216 (13%)

Query: 202 DISSHISQGKLG-------EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI ++ +    G       E    G+ + I+G  N GKS+L N L  + ++I +  P TT
Sbjct: 7   DIDAYFASQSEGQTVISTPEDQHCGF-VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTT 65

Query: 255 RDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NS 310
           R  +        Y     DT G+  E    + +   +     + + +L+L + E     +
Sbjct: 66  RHRIMGVETDGNYQAIYVDTPGLHIEEKRAINRLMNRAASSSLSDVNLVLFVVEGTHWTA 125

Query: 311 KKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL--------------ISSFTGEGLE 352
             E+ F K    N   +    K D      E   H+              IS+  G+  +
Sbjct: 126 DDEMVFNKLQKANFPVVLCVNKVDQVKDRNEVMLHMLELSKRMQFVDIVPISAKQGKNTD 185

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            L   ++  L       P    + +   +  S+ VR
Sbjct: 186 VLKKHVREHLPKAVHHFPEEYVTDRSQRFMASEIVR 221


>gi|257064001|ref|YP_003143673.1| GTP-binding protein Era [Slackia heliotrinireducens DSM 20476]
 gi|256791654|gb|ACV22324.1| GTP-binding protein Era [Slackia heliotrinireducens DSM 20476]
          Length = 301

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 88/211 (41%), Gaps = 23/211 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L NA+    VAI ++   TTR   +  +  +   + + DT G+ +  
Sbjct: 10  VTLVGRPNAGKSTLINAVVGHKVAITSNTAQTTRHRFSAIVTRDDMQIIMVDTPGLHKPH 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
           D + +E        +E+ D++ +L + +            +++       I I TK+DL 
Sbjct: 70  DALGQELNTSAIKAMEDVDVVAMLIDCSKPIGRGDEWVAAQVNEVHAPHKILILTKADLV 129

Query: 333 STYTEE-------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                E                ++S+ TG+ +      + + L    K  P  + + +  
Sbjct: 130 EPKVIEEQMKAAKRLARWDEIVVLSAKTGKNVSGFEEAVATWLPEGPKWFPDDMDTDQPL 189

Query: 380 LYHLSQTVRY-LEMASLNEKDCGLDIIAENL 409
              +++ +R  +  +  +E    + ++ E++
Sbjct: 190 EVIVAEFIREKILRSFRDEVPHSIGVVTEDM 220


>gi|297243698|ref|ZP_06927629.1| GTPase [Gardnerella vaginalis AMD]
 gi|296888449|gb|EFH27190.1| GTPase [Gardnerella vaginalis AMD]
          Length = 507

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 23/213 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + N I  L++DI++       K G   R     + ++G++NAGKSS+ N L   
Sbjct: 251 EMDRRAIRNRISKLRHDIANMAPARDVKRGSRRRQDIPTVAVVGYTNAGKSSIINRLTGS 310

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G    + DT G          E  K T  EV  AD+I
Sbjct: 311 QELVENALFATLDTAVRRSQTQDGRSYTLVDTVGFVRRLPTQLVEAFKSTLEEVGQADVI 370

Query: 303 LLLKEINSKKEISFPK-------------NIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + + +    IS                ++  I    KSD+ S    E          +
Sbjct: 371 LHVVDGSHPDPISQINAVNEVLANISGVEDMPQIMALNKSDMMSDAARERFSSLYPDAVI 430

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +S+F+GE L+ L N+++ +L +   ++  ++P 
Sbjct: 431 VSAFSGENLQILRNRLEELLPSPRVRVDVTLPY 463


>gi|303246793|ref|ZP_07333070.1| GTP-binding protein Era [Desulfovibrio fructosovorans JJ]
 gi|302491810|gb|EFL51690.1| GTP-binding protein Era [Desulfovibrio fructosovorans JJ]
          Length = 305

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 81/213 (38%), Gaps = 28/213 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  +    +V+LG +NAGKS+L N +  + V+IV+  P TTR+ ++  L          D
Sbjct: 2   ERAQRFGHVVMLGPTNAGKSTLLNRVIGQKVSIVSPKPQTTRNSISGILTEGDAQAVFLD 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNID 321
           T G+      +    ++  +  +  AD++L+L +             + +  +    N  
Sbjct: 62  TPGLHRQKRGIAPLLLRSAYAALGQADVVLVLLDGARYARDPDALRADLRPVVQALTNAK 121

Query: 322 FIFI--GTKSD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
              +    KSD              +           +S+ TG+G+ EL+  + + L   
Sbjct: 122 TPVVVALNKSDAVRDKARMLPVLAAIGEALPGAELFPVSALTGQGVAELLTALFARLPEG 181

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
             +      S     +   + VR     +L E+
Sbjct: 182 PHQYDPDEISTAPVRFLAGEIVREKLFLALGEE 214


>gi|39935764|ref|NP_948040.1| GTP-binding protein Era [Rhodopseudomonas palustris CGA009]
 gi|39649617|emb|CAE28139.1| possible GTP-binding protein Era [Rhodopseudomonas palustris
           CGA009]
          Length = 308

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 84/203 (41%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +   G  + + DT G
Sbjct: 14  RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIESGSQIILVDTPG 72

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTK 328
           I      +++  +K  +    +AD++ +L +    IN + E         +   + +  K
Sbjct: 73  IFAPKRRLDRAMVKTAWSGAHDADIVCVLLDARAGINEQAEDILANLANVDRPKLLVLNK 132

Query: 329 SDLYS-------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL +                 +   ++S+ TG+G+++L   + + +       P    S
Sbjct: 133 IDLIAREKLLALAQAANQRLAFDQTFMVSALTGDGVDDLRKALAAQVPPGPFHYPEDQMS 192

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                +  ++  R      L+++
Sbjct: 193 DAPLRHLAAEITREKIFRQLHQE 215


>gi|326316028|ref|YP_004233700.1| GTP-binding protein Era [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372864|gb|ADX45133.1| GTP-binding protein Era [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 349

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T     EG      DT G +   
Sbjct: 59  IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTREGTQFVFVDTPGFQTRH 118

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSD 330
                + + +T +  + + DLIL + E       ++K    F   I  + I  K D
Sbjct: 119 STALNKSLNKTVMGAIGDVDLILFVVEAGSFTLADAKVLSLFKPGIPTLLIANKLD 174


>gi|319900092|ref|YP_004159820.1| GTP-binding protein Era [Bacteroides helcogenes P 36-108]
 gi|319415123|gb|ADV42234.1| GTP-binding protein Era [Bacteroides helcogenes P 36-108]
          Length = 293

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 21/149 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I T    TTR  +    + +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++       N   E      +  + +  K DL   
Sbjct: 67  YKLQESMLNFSTSALTDADVLLYVTDVVETPDKHNDFVEKVAQMEVPVLLLINKIDLT-- 124

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILS 363
                         E L EL+   K +L 
Sbjct: 125 ------------NQEKLVELVEAWKELLP 141


>gi|306821157|ref|ZP_07454773.1| GTP-binding protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550850|gb|EFM38825.1| GTP-binding protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 399

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 22/172 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276
               I   G +N GKSSL N +  ++++IV++I GTT D +   +++ G    +  DTAG
Sbjct: 10  ERVHIAFFGRTNVGKSSLINKIVNQEISIVSEIRGTTTDPVQKAMEIHGIGATLIIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF-----PKNIDFIFIG 326
             +   + EK   ++T   +   D+ +++   +       KE+S+      KNI ++ + 
Sbjct: 70  FDDNSKLGEKRM-EKTSHILNKTDIAVIVTTPDDIISDFSKELSWIEKIKEKNIPYLIVI 128

Query: 327 TKSDL----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
            K DL           +  T +   LIS     G+E+LI+ ++ I   K + 
Sbjct: 129 NKIDLSKDMESLKKRVTELTSKEVILISVKENIGIEDLISSLEIICKFKDED 180


>gi|192291351|ref|YP_001991956.1| GTP-binding protein Era [Rhodopseudomonas palustris TIE-1]
 gi|192285100|gb|ACF01481.1| GTP-binding protein Era [Rhodopseudomonas palustris TIE-1]
          Length = 307

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 84/203 (41%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +   G  + + DT G
Sbjct: 13  RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIESGSQIILVDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTK 328
           I      +++  +K  +    +AD++ +L +    IN + E         +   + +  K
Sbjct: 72  IFAPKRRLDRAMVKTAWSGAHDADIVCVLLDARAGINEQAEDILANLANVDRPKLLVLNK 131

Query: 329 SDLYS-------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL +                 +   ++S+ TG+G+++L   + + +       P    S
Sbjct: 132 IDLIAREKLLALAQAANQRLAFDQTFMVSALTGDGVDDLRKALAAQVPPGPFHYPEDQMS 191

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                +  ++  R      L+++
Sbjct: 192 DAPLRHLAAEITREKIFRQLHQE 214


>gi|46201859|ref|ZP_00054208.2| COG1159: GTPase [Magnetospirillum magnetotacticum MS-1]
          Length = 303

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 22/200 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L NAL    V+IV+    TTR  +     +    V + DT G
Sbjct: 10  RCGF-VAVVGAPNAGKSTLVNALVGTKVSIVSPKVQTTRFRVMGIAMVGEAQVVLVDTPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFI--FIGTK 328
           I      +E+  +   +    +AD I LL +        S+  +   K        +  K
Sbjct: 69  IFAPKKRLERAMVAAAWGGTNDADHICLLIDAAKGYDDESRAIVDKLKETKRQAILVLNK 128

Query: 329 SDLYST-----YTEEYD--------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL         T + D         +IS+  G+G+++L+  +  ++S      P    S
Sbjct: 129 VDLVKRDKLLGLTAQLDAEGIFTDVFMISALKGDGIDDLLAHLGKLVSPGPWMFPEDQVS 188

Query: 376 HKRHLYHLSQTVRYLEMASL 395
                   ++  R     +L
Sbjct: 189 DLPQRLLAAEITREKAFIAL 208


>gi|317475738|ref|ZP_07934997.1| GTP-binding protein Era [Bacteroides eggerthii 1_2_48FAA]
 gi|316908121|gb|EFV29816.1| GTP-binding protein Era [Bacteroides eggerthii 1_2_48FAA]
          Length = 293

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 69/163 (42%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I T    TTR  +    + +   +  SDT G+ +  
Sbjct: 7   VNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGVLKPT 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL--- 331
             +++  +  +   + +AD++L + ++       N   E      +  + +  K DL   
Sbjct: 67  YKLQESMLNFSTSALTDADVLLYVTDVVETPDKHNDFVEKVSHMEVPVLLLVNKIDLSNQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                                IS+ T   ++ ++ +IK +L +
Sbjct: 127 EKLVELVEAWKELLPNAEIIPISAATKFNVDYVMKRIKELLPD 169


>gi|319941433|ref|ZP_08015761.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Sutterella wadsworthensis 3_1_45B]
 gi|319805053|gb|EFW01883.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Sutterella wadsworthensis 3_1_45B]
          Length = 360

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 91/235 (38%), Gaps = 24/235 (10%)

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
           L+   ++   +    +  +D   +    +  +S  K+ E  R GY + ++G  N GKS+L
Sbjct: 25  LEMPTDDLEADIEPGKPDDDFERMLAQ-AGALSSAKVPEGFRCGY-VAVVGRPNVGKSTL 82

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NA+  + V+I +  P TTR+ +   L  +       DT G +          + R+   
Sbjct: 83  INAIVGEKVSITSKKPQTTRNRVLGVLTTDQAQFIFVDTPGFQTKVKNQLTRRMNRSVRS 142

Query: 296 -VENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSDL--------------YS 333
            +   D ++++ E N  K            +  + I   +K+DL                
Sbjct: 143 TLSEVDAVVMVIESNGWKPGDLEVLRLLPTEASNVILAVSKTDLSKDRNALLPLMADSMR 202

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            Y       +S+     L++L+ +I+ +L          + + K   +  ++T+R
Sbjct: 203 RYPFAAIVPVSAEKHRQLDDLLREIEKLLPESIPYFDPDLYTDKSPRFLAAETIR 257


>gi|158423629|ref|YP_001524921.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158330518|dbj|BAF88003.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 311

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 22/212 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           ++ +  E  R G+ + +LG  NAGKS+L N L    V+IV+    TTR ++         
Sbjct: 7   AEAEGAEPTRCGF-VALLGAPNAGKSTLTNQLVGTKVSIVSHKVQTTRAIVRGIALEGPS 65

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------N 319
            V + DT GI      +E+  +   +    +AD++ LL + N   + +            
Sbjct: 66  QVILVDTPGIFSPKRRLERAMVNTAWTSASDADVVALLVDANRGIDENVESILKPLAEVK 125

Query: 320 IDFIFIGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                I  K D             L    + E   ++S+  G+G++++       +    
Sbjct: 126 RPRALILNKIDMIRRDTLLELAQKLTERLSFERVFMVSALKGDGVDDVRTWFAEKVPFGP 185

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
              P    S        ++  R      L+++
Sbjct: 186 WLYPEDQISDAPMRMLAAEITREKLFLRLHDE 217


>gi|115377693|ref|ZP_01464886.1| GTP-binding protein Era [Stigmatella aurantiaca DW4/3-1]
 gi|115365299|gb|EAU64341.1| GTP-binding protein Era [Stigmatella aurantiaca DW4/3-1]
          Length = 313

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 74/202 (36%), Gaps = 26/202 (12%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             +  R+G+   ++G  N GKS+L N L  + +AIV+  P TTR+ +   +      V  
Sbjct: 2   ASKTYRSGF-AALIGRPNVGKSTLLNQLTGEKIAIVSPKPQTTRNRILGVVTRPEGQVAF 60

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLI-----------LLLKEINSKKEISFPK-N 319
            DT GI +    + +  ++      E  DL+           L +   N        K  
Sbjct: 61  IDTPGIHQAKGELNRYMVEVALQAAEEVDLVLFVVDVPGGEKLEVGPGNRMILERLQKLG 120

Query: 320 IDFIFIGTKSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKF 366
                +  K D         L   Y  E+       IS+  G+G++ L       L    
Sbjct: 121 KPTFLVINKIDTLPKALILPLIDLYRNEFPFAEVVPISAREGDGVDRLFQVALQHLPEGE 180

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
           +     + + ++    +S+ +R
Sbjct: 181 RIFDEDMLTDQQERTLVSEYIR 202


>gi|253577825|ref|ZP_04855097.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850143|gb|EES78101.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 402

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 20/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           N   I I G +N+GKSS  N  + + V+IV D+ GTT D +   +++       I DTAG
Sbjct: 12  NRLHIGIFGKTNSGKSSFINTFSGQKVSIVADVAGTTTDPVYKPMEIYPLGPCIIIDTAG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK-EINSKKEISF-----PKNIDFIFIGTKSD 330
             +  ++     I++T L  +  +L ++L  E    +E+ +      +    I +  K+D
Sbjct: 72  FDDEGELGALR-IEKTSLAAQKTELAIILFCEDEMVQELKWYNYFKKRQTPVIPVLGKAD 130

Query: 331 LYSTYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKK 368
           LY+   +EY   +            SS TGEG+ +L   +   +   +  
Sbjct: 131 LYTQEQKEYLIQMIQKNTGETVCPVSSETGEGIRKLKELLAEKIPEGYGN 180


>gi|325279601|ref|YP_004252143.1| small GTP-binding protein [Odoribacter splanchnicus DSM 20712]
 gi|324311410|gb|ADY31963.1| small GTP-binding protein [Odoribacter splanchnicus DSM 20712]
          Length = 399

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 18/166 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
           + +VI G  N GKSS+ N + ++D A+V+ I GTT D +    ++ G   V + DTAG  
Sbjct: 4   FHLVITGRRNTGKSSIVNTILQQDKAVVSPIAGTTTDPVKKSYEIPGVASVVLIDTAGTD 63

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK----NIDFIFIGTKSD- 330
           +  ++ E   +K+TF  +  AD  LL+   N     +EI   +     + F+ +  KSD 
Sbjct: 64  DEGELGELR-VKKTFETIRQADAALLVITGNRFGHFEEILTEEFQKLKLPFLIVHNKSDL 122

Query: 331 ------LYSTYTEEYDHLISSFTGE--GLEELINKIKSILSNKFKK 368
                 L     ++Y   +  F+      E LI KI ++++ +   
Sbjct: 123 EPLQEQLREKLLQKYGTPVIGFSTCQAKREMLIQKIGTLVNRQNSS 168


>gi|156975791|ref|YP_001446698.1| GTP-binding protein Era [Vibrio harveyi ATCC BAA-1116]
 gi|156527385|gb|ABU72471.1| hypothetical protein VIBHAR_03535 [Vibrio harveyi ATCC BAA-1116]
          Length = 320

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 29  IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDTPGLHIEE 88

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L+  L +     +  E+   K    N   +    K D   
Sbjct: 89  KRAINRLMNRAANSSLSDVNLVFFLVDGTHWTNDDEMVLTKLQKSNFPVVLCVNKVDNVQ 148

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H++              S+  G+ +E L   ++  L       P    + +  
Sbjct: 149 DRNEVMLHMMDMSKKMDFVDVVPISAKHGKNIEVLRKHVRDHLPKSTHHFPEEYVTDRSQ 208

Query: 380 LYHLSQTVR 388
            +  S+ VR
Sbjct: 209 RFMASEIVR 217


>gi|332826860|gb|EGJ99660.1| GTP-binding protein Era [Dysgonomonas gadei ATCC BAA-286]
          Length = 293

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 88/208 (42%), Gaps = 21/208 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + V+I+T    TTR  +   ++ + Y +  SDT G+   +
Sbjct: 7   VNIVGNPNVGKSTLMNLLVGEKVSIITSKAQTTRHRILGIVNTDDYQIVYSDTPGVLRPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD---- 330
             +++  +  +   + +AD++L + ++     K E    K    +   + +  K D    
Sbjct: 67  YKLQESMLNFSVSALSDADVLLYMTDVIEKTDKNEEFLQKVQNVDAPVLLLINKIDQTNQ 126

Query: 331 -----LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                L + + E       + IS+     ++ +  +I  ++            + +   +
Sbjct: 127 QELEKLVAQWKELLPKAEIYPISALNKFNVDTVKKRILDLIPESPPYFEKDALTDRPARF 186

Query: 382 HLSQTVRY-LEMASLNEKDCGLDIIAEN 408
            +++ +R  + +    E    +++I E 
Sbjct: 187 FVTEIIREKILLYYQKEVPYAVEVIVEE 214


>gi|312795543|ref|YP_004028465.1| GTP-binding protein era [Burkholderia rhizoxinica HKI 454]
 gi|312167318|emb|CBW74321.1| GTP-binding protein era [Burkholderia rhizoxinica HKI 454]
          Length = 323

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + V+I +    TTR  +T    L+       DT G +   
Sbjct: 38  IAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIRTLDDAQFIFVDTPGFQTRH 97

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D++L + E       + +     P ++  + +  K D  S 
Sbjct: 98  GSALNRSLNRAVTSTLTSVDVVLFVVEAGRYGPDDQRVLELIPPSVPTVLLANKIDKLSD 157

Query: 335 YTEEYDHLISSFTGEGLEELI-------NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
            +     L S+       +++       + I  +L      LP   P +        ++ 
Sbjct: 158 KSALLPFLKSTAALRAFRDVVPMSAKQPDDITRLLKILRPSLPLGEPIYGED-ELTDRSE 216

Query: 388 RYLEMASLNEK 398
           R+L    L EK
Sbjct: 217 RFLAAEILREK 227


>gi|293189528|ref|ZP_06608248.1| GTP-binding protein Era [Actinomyces odontolyticus F0309]
 gi|292821618|gb|EFF80557.1| GTP-binding protein Era [Actinomyces odontolyticus F0309]
          Length = 412

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 24/229 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +  + E +  +  L+ D ++ I      E  R G+ + I+G  N GKS+L NAL    +A
Sbjct: 85  DLDAFEAMTSLASLREDAAATIEMPDFPEDFRAGF-VSIVGRPNVGKSTLTNALVGHKIA 143

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +  P TTR  +   +  + Y + + DT G      ++ K         +   D++L  
Sbjct: 144 ITSGRPETTRHNIRGIVHGDNYQLVLVDTPGYHRPRTLLGKRLNDMVREALSEVDVVLFC 203

Query: 306 KEINSK---------KEISFPKNIDFIFIGTKSD-------------LYSTYTEEYDHLI 343
              + +         +E+   K    I + TK D             +           +
Sbjct: 204 LPADQRIGPGDQFIARELRGIK-RPIIAVATKCDAVPRERVMKHLLSIEKLGEWAAIVPV 262

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
           SS  G+G++ L   +   +       P    + +     +++ +R   +
Sbjct: 263 SSVEGKGIDHLREVLAQTVPLSPPLYPEGDVTDESRDTLIAEFIREAAL 311


>gi|225077528|ref|ZP_03720727.1| hypothetical protein NEIFLAOT_02591 [Neisseria flavescens
           NRL30031/H210]
 gi|284800155|ref|ZP_06390567.1| tRNA modification GTPase TrmE [Neisseria subflava NJ9703]
 gi|224951148|gb|EEG32357.1| hypothetical protein NEIFLAOT_02591 [Neisseria flavescens
           NRL30031/H210]
 gi|284795882|gb|EFC51229.1| tRNA modification GTPase TrmE [Neisseria subflava NJ9703]
          Length = 86

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L + +   +  +  +      +  RHL  L +    LE A+L   +  +++ AE+LRLA 
Sbjct: 2   LKHALLQEVGWQ-GESESLFLARSRHLNALHEAEAELENAALCNNNQ-IELFAEHLRLAQ 59

Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440
            +  +ITG    + LL +IFS+FCIGK
Sbjct: 60  NACSEITGEFTADDLLGVIFSRFCIGK 86


>gi|154509437|ref|ZP_02045079.1| hypothetical protein ACTODO_01968 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799071|gb|EDN81491.1| hypothetical protein ACTODO_01968 [Actinomyces odontolyticus ATCC
           17982]
          Length = 412

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 24/229 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +  + E +  +  L+ D ++ I      E  R G+ + I+G  N GKS+L NAL    +A
Sbjct: 85  DLDAFEAMTSLASLREDAAATIEMPDFPEDFRAGF-VSIVGRPNVGKSTLTNALVGHKIA 143

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           I +  P TTR  +   +  + Y + + DT G      ++ K         +   D++L  
Sbjct: 144 ITSGRPETTRHNIRGIVHGDNYQLVLVDTPGYHRPRTLLGKRLNDMVREALSEVDVVLFC 203

Query: 306 KEINSK---------KEISFPKNIDFIFIGTKSD-------------LYSTYTEEYDHLI 343
              + +         +E+   K    I + TK D             +           +
Sbjct: 204 LPADQRIGPGDQFIARELRGIK-RPIIAVATKCDAVPRERVMKHLLSIEKLGEWAAIVPV 262

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
           SS  G+G++ L   +   +       P    + +     +++ +R   +
Sbjct: 263 SSVEGKGIDHLREVLAQTVPLSPPLYPEGDVTDESRDTLIAEFIREAAL 311


>gi|257093154|ref|YP_003166795.1| GTP-binding protein Era [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257045678|gb|ACV34866.1| GTP-binding protein Era [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 294

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 8/122 (6%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           IR+G +I I+G  N GKS+L NAL  + ++IV+    TTR  +   L          DT 
Sbjct: 4   IRSG-QIAIIGRPNVGKSTLLNALIGEKLSIVSRRAQTTRHRIIGILTRADTQYVFVDTP 62

Query: 276 GIRETDDIVEKEGIKR-TFLEVENADLILLLKEINSKKEIS------FPKNIDFIFIGTK 328
           G +        + + R     +   D++L + E     E         P +   I +  K
Sbjct: 63  GFQTRYGNALNQVMNRGVRQALAEVDVVLFVVEAGRFDERDRAVRQLVPSDCPLIIVVNK 122

Query: 329 SD 330
            D
Sbjct: 123 ID 124


>gi|83644633|ref|YP_433068.1| GTP-binding protein Era [Hahella chejuensis KCTC 2396]
 gi|83632676|gb|ABC28643.1| GTP-binding protein Era [Hahella chejuensis KCTC 2396]
          Length = 304

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 75/208 (36%), Gaps = 23/208 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + ++I +  P TTR  +        Y     DT G+ + D
Sbjct: 16  VAIVGRPNVGKSTLLNHILGQKISITSKKPQTTRHQILGIKTEGDYQAIYVDTPGLHQLD 75

Query: 282 DIVEKEGIKRT-FLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
                  + +     +++AD+I+ + +      + +    K    N   I +  K D   
Sbjct: 76  KKALNRVLNKASSSAIKDADVIVFVVDRKRWTEEDDYVLSKIAKVNRPRILVINKVDKLE 135

Query: 334 TYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +              ++   +S+  G  ++ L   I  +L       P    + +  
Sbjct: 136 NKDDLLPFIDKVQKMCEFQHIIPLSALRGLNIDRLEAVINEMLPQGIHFFPEDQITDRSE 195

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAE 407
            +   + +R   M  L   +   +I  E
Sbjct: 196 RFMAVEIIREKVMRQLG-NEVPYEIAVE 222


>gi|218128436|ref|ZP_03457240.1| hypothetical protein BACEGG_00004 [Bacteroides eggerthii DSM 20697]
 gi|329957357|ref|ZP_08297877.1| ribosome biogenesis GTPase Era [Bacteroides clarus YIT 12056]
 gi|217989327|gb|EEC55640.1| hypothetical protein BACEGG_00004 [Bacteroides eggerthii DSM 20697]
 gi|328523070|gb|EGF50173.1| ribosome biogenesis GTPase Era [Bacteroides clarus YIT 12056]
          Length = 293

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 69/163 (42%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I T    TTR  +    + +   +  SDT G+ +  
Sbjct: 7   VNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGVLKPT 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDL--- 331
             +++  +  +   + +AD++L + ++       N   E      +  + +  K DL   
Sbjct: 67  YKLQESMLNFSTSALTDADVLLYVTDVVETPDKHNDFVEKVSHMEVPVLLLVNKIDLSNQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                                IS+ T   ++ ++ +IK +L +
Sbjct: 127 EKLVELVEAWKELLPNAEIIPISAATKFNVDYVMKRIKELLPD 169


>gi|171911579|ref|ZP_02927049.1| hypothetical protein VspiD_10405 [Verrucomicrobium spinosum DSM
           4136]
          Length = 431

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 122/303 (40%), Gaps = 32/303 (10%)

Query: 113 FSRRAFE--NGKIDLLEAESLADL--ISSETEMQR-RLSMEGMSGELSSLYGQW--IDKL 165
             +RA+E  +G   +   E + D+  + + T   R ++++  M   +  L   W  +D+ 
Sbjct: 93  AQQRAWEEESGLCVIDRQEVILDIFNLRARTREARLQVALARMEYSMPRLTRMWAHLDRQ 152

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI--- 222
                         E E       +     I  LK D+     Q       R+   +   
Sbjct: 153 RGAGGGGAGGSARGEGELQLEIDRRLANKRIDKLKADLIEVRKQRDTQRKERSRVPVPHG 212

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETD 281
            I+G++NAGKSSL N L + +V +  D    T D  T  ++L +G  + ++DT G     
Sbjct: 213 AIVGYTNAGKSSLLNKLTQSEV-LAEDKLFATLDTSTRRMELPDGQQLLLTDTVGFVRRL 271

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGTKS 329
                +  + T  E   AD ++ + + +     +F              +   I +  K 
Sbjct: 272 PHDLVQSFRATLEETTLADFLIHVVDASHPSAHTFYETTTEVLKEIGAGDKRVILVLNKM 331

Query: 330 DLYSTYTEEYD--------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           DL +  +  ++          IS  TG+G+++L++K+  ++ ++  +L   +P ++  L 
Sbjct: 332 DLVTEESRLHELKNQFPDAVQISVQTGQGIDDLLHKLHEMVFDRVLRLTLRLPMNRLDLL 391

Query: 382 HLS 384
            L+
Sbjct: 392 ALA 394


>gi|313158000|gb|EFR57406.1| ribosome biogenesis GTPase Era [Alistipes sp. HGB5]
          Length = 293

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I+T    TTR  +   +  E + +  SDT GI +  
Sbjct: 7   VNIIGNPNVGKSTLMNALVGEKLSIITSKAQTTRHRIMGIVSGEDFQIVYSDTPGILKPS 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI----NSKKEI---SFPKNIDFIFIGTKSDL--- 331
             +++  +K     V +AD+IL + +     +   EI        I  + +  K DL   
Sbjct: 67  YKLQESMMKFVTGAVTDADVILYVTDTVEQGDRSAEIIGRIRESGIPTVVVINKIDLSTP 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                          E      S+     +E L   I ++L       P    + K   +
Sbjct: 127 EALDALVDKWRQELPEAQIVPASAKENFNIEGLFKTILALLPEGPAFYPKETLTDKTLRF 186

Query: 382 HLSQTVR 388
             S+ +R
Sbjct: 187 FASEIIR 193


>gi|303326575|ref|ZP_07357018.1| GTP-binding protein Era [Desulfovibrio sp. 3_1_syn3]
 gi|302864491|gb|EFL87422.1| GTP-binding protein Era [Desulfovibrio sp. 3_1_syn3]
          Length = 307

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 28/196 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + ++G  NAGKS+L NAL  + V IVT  P TTR+ +   L  E   V   DT G+ + 
Sbjct: 10  WVALMGPPNAGKSTLLNALLGQKVTIVTPKPQTTRNQIVGILTDEEAQVIFMDTPGLTQV 69

Query: 281 DDIVEKEGIKRTFLEVENADLIL-------------LL-KEINSKKEISFPKNIDFIFIG 326
              + K  I+  +  +  AD+I+              L +++    E         I + 
Sbjct: 70  RGRLSKTMIQAVWQSLGQADVIMPILDSHLYIRHPEFLDRDLAPVAEALASDERPMIVVV 129

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            K DL+S               +        S+   +GL EL   I+S L     + P  
Sbjct: 130 NKVDLFSDKSRMLPLLTRLNEMWPRADIFPTSALRRDGLPELKALIRSKLPEGPAQFPED 189

Query: 373 IPSHKRHLYHLSQTVR 388
             S     +  ++ +R
Sbjct: 190 QISTASLRFMAAEIIR 205


>gi|134295165|ref|YP_001118900.1| GTP-binding protein Era [Burkholderia vietnamiensis G4]
 gi|134138322|gb|ABO54065.1| GTP-binding protein Era [Burkholderia vietnamiensis G4]
          Length = 299

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 66/191 (34%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T     +       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFIFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + DLIL + E       + K     P     + I  K D    
Sbjct: 74  STALNRSLNRAVTSTLTSVDLILFVIEAGRFGPDDQKVLDLIPPGAPTLLIANKVDRVGD 133

Query: 335 YTEEYDHLISSFTGEGLEELI-------NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
               +  +          EL+         IK +L      LP   P +        ++ 
Sbjct: 134 KATLFPFMQKMSALREFTELVPLSAQRPEDIKHLLDTIKPHLPEGQPIYGED-ELTDRSS 192

Query: 388 RYLEMASLNEK 398
           R+L    L EK
Sbjct: 193 RFLAAEILREK 203


>gi|22537642|ref|NP_688493.1| GTP-binding protein Era [Streptococcus agalactiae 2603V/R]
 gi|25011601|ref|NP_735996.1| GTP-binding protein Era [Streptococcus agalactiae NEM316]
 gi|76787745|ref|YP_330131.1| GTP-binding protein Era [Streptococcus agalactiae A909]
 gi|77405197|ref|ZP_00782295.1| GTP-binding protein Era [Streptococcus agalactiae H36B]
 gi|77413995|ref|ZP_00790168.1| GTP-binding protein Era [Streptococcus agalactiae 515]
 gi|81453614|sp|Q8DYI1|ERA_STRA5 RecName: Full=GTPase Era
 gi|81744499|sp|Q8E443|ERA_STRA3 RecName: Full=GTPase Era
 gi|123601489|sp|Q3K022|ERA_STRA1 RecName: Full=GTPase Era
 gi|22534528|gb|AAN00366.1|AE014260_22 GTP-binding protein Era [Streptococcus agalactiae 2603V/R]
 gi|24413141|emb|CAD47219.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562802|gb|ABA45386.1| GTP-binding protein Era [Streptococcus agalactiae A909]
 gi|77159975|gb|EAO71113.1| GTP-binding protein Era [Streptococcus agalactiae 515]
 gi|77176199|gb|EAO78970.1| GTP-binding protein Era [Streptococcus agalactiae H36B]
          Length = 299

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK----- 328
             +    ++  +  +   + +L +   + K+        E      I  I +  K     
Sbjct: 68  TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKVH 127

Query: 329 --------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +  LI  +   L   F+  P    +     
Sbjct: 128 PDQLLEQIDDFRSQMDFKEVVPISALQGNNVPTLIKLLTDNLEEGFQYFPEDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 188 FLVSEMVR 195


>gi|319408284|emb|CBI81937.1| GTP-binding protein Era [Bartonella schoenbuchensis R1]
          Length = 303

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 79/203 (38%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N L    V+IVT    TTR ++   +  E   + + DT G
Sbjct: 10  RCGF-VALIGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIYENTQIVLIDTPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           +      +E   +   +     AD++L+L ++ +                  D I +  K
Sbjct: 69  VFRPHKRLEHAMVSAAWGGARGADILLILIDVQNGLSDEVDAMLNVLENIKQDKILVLNK 128

Query: 329 SD---------LYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D         L +   E        +IS+  G G ++L++ + +++            S
Sbjct: 129 IDTVARTSLLALTAKINERMKFLQTFMISALNGSGCKDLLHYLSTMMQEGPWYYSEDQVS 188

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+E+
Sbjct: 189 DMPMRQLAAEITREKLFLRLHEE 211


>gi|329947103|ref|ZP_08294479.1| GTP-binding protein HflX [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526280|gb|EGF53297.1| GTP-binding protein HflX [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 520

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 94/251 (37%), Gaps = 29/251 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+ +I +     + K G   R     + I G++NAGKSSL N L + 
Sbjct: 260 ELDRRRIRQRMARLRREIQAMAPSRETKRGSRRRGAIPSVAIAGYTNAGKSSLMNRLTEA 319

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            + +   +  T    +      EG    ++DT G          E  + T  EV  ADL+
Sbjct: 320 GIMVEDALFATLDPTVRRAETSEGRTYTLTDTVGFVRNLPHELIEAFRSTLEEVAGADLV 379

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + +                  EI    ++  + +  K+DL    T             
Sbjct: 380 LHVVDAAHPDPLSQVAAVRTVLSEIPDALDVPELIVLNKTDLADAVTLAALRTRLPGSVA 439

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS------HKRHLYHLSQTVRYLEMASLN 396
           +S+ TGEG+EEL  +I+ +L +    +   +P        + H      TV Y+E  +  
Sbjct: 440 VSARTGEGIEELRTRIERMLPHPQVSIDVVVPYSRGDLVSRVHAEGEIDTVDYVETGTRV 499

Query: 397 EKDCGLDIIAE 407
               G  + AE
Sbjct: 500 VARVGSALAAE 510


>gi|302340172|ref|YP_003805378.1| GTP-binding protein Era [Spirochaeta smaragdinae DSM 11293]
 gi|301637357|gb|ADK82784.1| GTP-binding protein Era [Spirochaeta smaragdinae DSM 11293]
          Length = 294

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 20/208 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            I ++G  + GKS+L N L  + ++IV   P TTR  +   L  E   +  +DT G   +
Sbjct: 7   WITLIGRPSVGKSTLVNCLCGRKISIVAPSPQTTRSTVRGILTEERGQLVFADTPGYHIS 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIGTKSDLY 332
           D  + +     T   +E  +L+L + +        ++EI+    P     +    K+DL 
Sbjct: 67  DKKLNRYLKTATEAALEECELVLYIIDATRSAGQEEREIAGLLAPLAEKLVVAINKNDLP 126

Query: 333 ST------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                         +       IS+ TGEG E L+N +  +        P    + +   
Sbjct: 127 EASVPAAETAAAEAFPGRPIFTISAETGEGTEALLNTLFELSPEGELLYPEEFYTDQDPE 186

Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           + +++ +R   +  L ++      +A  
Sbjct: 187 FRVTEIIREQVIGRLRQELPHAVYVAVE 214


>gi|284097360|ref|ZP_06385484.1| tRNA modification GTPase trmE [Candidatus Poribacteria sp. WGA-A3]
 gi|283831125|gb|EFC35111.1| tRNA modification GTPase trmE [Candidatus Poribacteria sp. WGA-A3]
          Length = 88

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGK 418
            L    +  P  + +  RH   L Q    +E A  SL  K+ G + +A ++R A  +LG+
Sbjct: 8   CLKEGLEATPSVLVTRLRHKASLEQAHCSIEEAMRSLERKESG-ECVALDIRAALDALGE 66

Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440
           ITG V  E +LD IF  FCIGK
Sbjct: 67  ITGAVSTEDILDRIFQDFCIGK 88


>gi|114331754|ref|YP_747976.1| GTP-binding protein Era [Nitrosomonas eutropha C91]
 gi|122313495|sp|Q0AF71|ERA_NITEC RecName: Full=GTPase Era
 gi|114308768|gb|ABI60011.1| GTP-binding protein Era [Nitrosomonas eutropha C91]
          Length = 296

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L K+ ++I +    TTR  +   L          DT G +   
Sbjct: 11  ISIVGRPNVGKSTLLNHLIKQKISITSRKAQTTRHRIHGILTDVQSQFIFVDTPGFQMRH 70

Query: 282 DIVEKEGIKR-TFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                + + R     +++ D+IL + E       + +     P+N+  I +  K DL   
Sbjct: 71  RSQLNQVMNRVVLQSMQDVDVILFVLEAGRFGREDEQVLEQLPRNLPVILVINKIDLLPD 130

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
             +    +               S+     L +L   I+  L            + +   
Sbjct: 131 KLQLLPFMQKMADLFDFADIVPVSALQNRQLSDLTEVIRHYLPENPPVFTEDEITDRSER 190

Query: 381 YHLSQTVRYLEMASLNEK 398
           +  ++ +R      + E+
Sbjct: 191 FLAAELLREKVFRQIGEE 208


>gi|320534682|ref|ZP_08035123.1| GTP-binding protein HflX [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320133116|gb|EFW25623.1| GTP-binding protein HflX [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 532

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 84/218 (38%), Gaps = 23/218 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+ +I +     + K G   R     + I G++NAGKSSL N L + 
Sbjct: 271 ELDRRRIRQRMARLRREIQAMAPSRETKRGSRRRGAIPSVAIAGYTNAGKSSLMNRLTEA 330

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            + +   +  T    +      EG    ++DT G          E  + T  EV  ADL+
Sbjct: 331 GIMVEDALFATLDPTVRRAETSEGRTYTLTDTVGFVRNLPHELIEAFRSTLEEVAGADLV 390

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + +                  EI    ++  + +  K+DL    T             
Sbjct: 391 LHVVDAAHPDPLSQVAAVRTVLSEIPGALDVPELIVLNKTDLADAVTLAALRTGLPGAVA 450

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG+EEL  +I+ +L +    +   +P  +  L
Sbjct: 451 VSARTGEGIEELRARIEQMLPHPQVSIDVVVPYSRGDL 488


>gi|227537544|ref|ZP_03967593.1| GTP-binding protein Era [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242596|gb|EEI92611.1| GTP-binding protein Era [Sphingobacterium spiritivorum ATCC 33300]
          Length = 292

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 12/170 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L NAL  + ++I+T    TTR  +   ++ E + +  SDT G+ + +
Sbjct: 8   VSIIGKPNAGKSTLMNALVGEKMSIITPKAQTTRHRIIGIVNDENHQIVFSDTPGVIKPN 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDL--YS 333
             +++  +      + +AD+IL + +IN K       E     +     +  K D     
Sbjct: 68  YSLQESMMNFVQGSLIDADIILFVTDINEKYDENDVIEKLRKTSSPVAVLINKIDKSTEE 127

Query: 334 TYTEEYDHLISSF---TGEGLEELINK-IKSILSNKFKKLPFSIPSHKRH 379
               + +         T   +  L+   + +I+    +KLP   P +++ 
Sbjct: 128 DVKAKIEFWKEKLNPDTIFAISALLQHNVVAIMEYIKEKLPEHAPYYEKD 177


>gi|297539124|ref|YP_003674893.1| GTP-binding protein Era [Methylotenera sp. 301]
 gi|297258471|gb|ADI30316.1| GTP-binding protein Era [Methylotenera sp. 301]
          Length = 307

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +    +AI +    TTR  L      E       DT G ++  
Sbjct: 23  IAIVGRPNVGKSTLLNHILGMKLAITSRKAQTTRHRLLGIHTTEDTQFLFVDTPGFQQKH 82

Query: 282 DIVEKEGIKRTF-LEVENADLILLLK------EINSKKEISFPKNIDFIFIGTKSD---- 330
                +G+ +T    +   D++L +       E + K           I +  KSD    
Sbjct: 83  LNTLNKGLNKTVTQVLTEVDVVLFVIEPMKLGEADRKVLALLSDKPPTILVVNKSDLMGD 142

Query: 331 ------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 L   +  E+        S+     L+EL++ I+  L  +         + K   
Sbjct: 143 KGNLLPLIQDFDLEFPFTDIVPVSAKKSLNLDELLHTIRKYLPEQAAIYAEDELTDKNER 202

Query: 381 YHLSQTVR 388
           +  ++ VR
Sbjct: 203 FLAAELVR 210


>gi|70946047|ref|XP_742778.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521948|emb|CAH81720.1| hypothetical protein PC000779.04.0 [Plasmodium chabaudi chabaudi]
          Length = 139

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK--KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +IIRN   I I+G  N GKS++FN L +  ++ +IV D P +TRD      + +GY  ++
Sbjct: 21  KIIRNLPLISIIGRPNVGKSTIFNRLTRKFQEGSIVLDKP-STRDKFYGKSEWDGYRFEV 79

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            DT G+   D+   KE   +  L +E + ++L + +
Sbjct: 80  VDTGGLLFEDENFSKEIRDQILLALEESSVVLFVVD 115


>gi|60683340|ref|YP_213484.1| GTP-binding protein Era [Bacteroides fragilis NCTC 9343]
 gi|60494774|emb|CAH09580.1| putative GTP-binding protein (cell growth-related) [Bacteroides
           fragilis NCTC 9343]
 gi|301164829|emb|CBW24389.1| putative GTP-binding protein (cell growth-related) [Bacteroides
           fragilis 638R]
          Length = 305

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 71/163 (43%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +    + +   +  SDT G+ + +
Sbjct: 19  VNIVGNPNVGKSTLMNVLVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGVLKPN 78

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++       N   +    ++   + +  K DL   
Sbjct: 79  YKLQESMLNFSTSALADADVLLYVTDVIETPDKNNEFIQKVRQQSAPILLLINKIDLTDQ 138

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                          +     IS+ T   ++ ++ +IK +L +
Sbjct: 139 EKLVKLVEEWKELLPQAEIIPISAATKFNVDYVMKRIKDLLPD 181


>gi|255011701|ref|ZP_05283827.1| GTP-binding protein Era [Bacteroides fragilis 3_1_12]
 gi|313149535|ref|ZP_07811728.1| GTP-binding protein Era [Bacteroides fragilis 3_1_12]
 gi|313138302|gb|EFR55662.1| GTP-binding protein Era [Bacteroides fragilis 3_1_12]
          Length = 293

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 70/163 (42%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +    + +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNVLVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++       N   +    +    + +  K DL   
Sbjct: 67  YKLQESMLNFSTSALADADVLLYVTDVIETPDKNNEFIQKVRQQTAPVLLLINKIDLTDQ 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                          +     IS+ T   ++ ++ +IK +L +
Sbjct: 127 EKLVKLVEDWKELLPQAEIIPISAATKFNVDYVMKRIKELLPD 169


>gi|262166501|ref|ZP_06034238.1| GTP-binding protein Era [Vibrio mimicus VM223]
 gi|262026217|gb|EEY44885.1| GTP-binding protein Era [Vibrio mimicus VM223]
          Length = 324

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 30/216 (13%)

Query: 202 DISSHISQGKLG-------EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI ++ +    G       E    G+ + I+G  N GKS+L N L  + ++I +  P TT
Sbjct: 7   DIDAYFASRSEGQTVTSTPEDQHCGF-VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTT 65

Query: 255 RDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NS 310
           R  +        Y     DT G+  E    + +   +     + + +L+L + E     +
Sbjct: 66  RHRIMGVETDGNYQAIYVDTPGLHIEEKRAINRLMNRAASSSLSDVNLVLFVVEGTHWTA 125

Query: 311 KKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL--------------ISSFTGEGLE 352
             E+ F K    N   +    K D      E   H+              IS+  G+  +
Sbjct: 126 DDEMVFNKLQKANFPVVLCVNKVDQVKDRNEVMLHMLELSKRMQFVDIVPISAKQGKNTD 185

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            L   ++  L       P    + +   +  S+ VR
Sbjct: 186 VLKKHVRDHLPKAVHHFPEEYVTDRSQRFMASEIVR 221


>gi|299822890|ref|ZP_07054776.1| GTP-binding protein Era [Listeria grayi DSM 20601]
 gi|299816419|gb|EFI83657.1| GTP-binding protein Era [Listeria grayi DSM 20601]
          Length = 301

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 9/128 (7%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++G+ + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   +   D
Sbjct: 3   ETFKSGF-VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFID 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNID--FIFI 325
           T GI +    +    +K  F   +  DLI  + + +       +  I   KN+D     +
Sbjct: 62  TPGIHKPKHKLGDFMVKIAFNTFQEVDLIYFVIDASTGLGRGDEFIIEKLKNVDTPVFLL 121

Query: 326 GTKSDLYS 333
             K DL S
Sbjct: 122 INKIDLIS 129


>gi|225868116|ref|YP_002744064.1| GTP-binding protein Era homolog [Streptococcus equi subsp.
           zooepidemicus]
 gi|259646273|sp|C0MCD8|ERA_STRS7 RecName: Full=GTPase Era
 gi|225701392|emb|CAW98467.1| GTP-binding protein Era homolog [Streptococcus equi subsp.
           zooepidemicus]
          Length = 298

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   +TR+ +      E   +   DT GI +  
Sbjct: 7   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQSTRNKIMGIYTTETEQIVFIDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK----- 328
             +    ++  +  +   + +L +   + K+        E      I  I +  K     
Sbjct: 67  TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAARIPVILVINKIDKVH 126

Query: 329 --------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +E L+  +K  L   F+  P    +     
Sbjct: 127 PDQLLEQIDDFRSQMDFKEIVPISALQGNNVETLVQLLKDNLEEGFQYFPEDQITDHPER 186

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 187 FLVSEMVR 194


>gi|325068464|ref|ZP_08127137.1| GTP-binding proten HflX [Actinomyces oris K20]
          Length = 273

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 87/237 (36%), Gaps = 23/237 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+ +I +     + K G   R     + I G++NAGKSSL N L + 
Sbjct: 26  ELDRRRIRQRMARLRREIQAMAPSRETKRGSRRRGAIPSVAIAGYTNAGKSSLMNRLTEA 85

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            + +   +  T    +      EG    ++DT G          E  + T  EV  ADL+
Sbjct: 86  GIMVEDALFATLDPTVRRAETSEGRTYTLTDTVGFVRNLPHELIEAFRSTLEEVAGADLV 145

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + +                  EI    ++  + +  K+DL    T             
Sbjct: 146 LHVVDAAHPDPLSQVAAVRTVLSEIPGALDVPELIVLNKTDLADAVTLAALRTGLPGAVA 205

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           +S+ TGEG+EEL  +I+ +L +    +   +P  +  L         ++     E  
Sbjct: 206 VSARTGEGIEELRARIEQMLPHPQVSIDVVVPYSRGDLVSRVHAEGEIDTVDYIEAG 262


>gi|311745512|ref|ZP_07719297.1| GTP-binding protein Era [Algoriphagus sp. PR1]
 gi|126578067|gb|EAZ82287.1| GTP-binding protein Era [Algoriphagus sp. PR1]
          Length = 297

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I++    TTR  +    + E Y +  SDT G+ +  
Sbjct: 11  VNIIGKPNVGKSTLMNILVGERLSIISSKAQTTRHRILGLTNTENYQIVFSDTPGMLKPQ 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSDLYST 334
             + K  +    + +E+AD++L + ++    E             I  I    K DL   
Sbjct: 71  YELHKNMMSFVNISLEDADVVLFVTDLYETDEEIVEIIDKINQSGIPIILAINKIDLAKE 130

Query: 335 YTEE 338
              E
Sbjct: 131 GQLE 134


>gi|116515306|ref|YP_802935.1| EngA [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116257160|gb|ABJ90842.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 449

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 21/171 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
             I ++G SN GKSSLFN L     A+ +D+P TTRD     L ++   + I DTAGI  
Sbjct: 3   LNIALIGKSNVGKSSLFNLLTNSKSALTSDLPSTTRDRQYGFLKIKEKKINIIDTAGINN 62

Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGT 327
             R+  +++EK+  K+T L ++   LI  L +   +  I           +N +   +  
Sbjct: 63  IKRKFFNLIEKQAYKQTILAIQEFHLIFFLVDARYELTIVDYFILKLIRKENKNIFLLIN 122

Query: 328 KSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKL 369
           K DL        D            S     G   L+  I + L  + KK+
Sbjct: 123 KIDLMKRENSFIDFYNLGIKNIFKISVIHKIGYLNLLKNIYNFLKKREKKI 173



 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNG-------YKIVILGHSNAGKSSLFNALAKKDVAIVT 248
            L L  +I + + + +    + N         KI  LG +NAGKS+L N+L   +  I +
Sbjct: 155 YLNLLKNIYNFLKKREKKIFLENNKINKYINIKICFLGKTNAGKSTLINSLLNSNRVITS 214

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLL 305
               TTRD++ I L  +      +DTAGI   R+  D +     K++F  V+   + +++
Sbjct: 215 STKNTTRDMIEISLINKKIKYIFTDTAGINKKRKKKDFLNYIFEKKSFDVVKKNQIAIIV 274

Query: 306 KEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
            +     S K++S       +N+ F  I  K DL S   ++     + +
Sbjct: 275 IDSYVGISSKDLSIITFLINQNVAFFIIFNKWDLISKERKKKIKQENKY 323


>gi|85000959|ref|XP_955198.1| GTP-binding protein [Theileria annulata strain Ankara]
 gi|65303344|emb|CAI75722.1| GTP-binding protein, putative [Theileria annulata]
          Length = 496

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 76/190 (40%), Gaps = 33/190 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD------LEGYLVKISD 273
            +   L   N+GKSS+ N L  ++  IV+   GTT+D   + +       L G  +   D
Sbjct: 249 LRYYKLCRPNSGKSSMINKLIGENRCIVSPEEGTTQDSTKVFVTHGKLKALGGEKMTFID 308

Query: 274 TAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIF 324
           TAG++  T D       K +   +  +D+ +L+ + +   SK +I        +N   I 
Sbjct: 309 TAGMKLLTKDRRSYLSQKSSLKSIRASDVCILVIDSSWGISKNDIRMAEEIKEENKAAII 368

Query: 325 IGTKSDLYSTYTEEYDH------------------LISSFTGEGLEELINKIKSILSNKF 366
           +  K DL       +D+                  + S+ +G+ ++ +   I+       
Sbjct: 369 VCNKWDLVDKTPTIFDNVIGYVREKLYWLDYADVLITSAKSGQKVQNIFEAIQRTYKQYC 428

Query: 367 KKLPFSIPSH 376
             LP ++ ++
Sbjct: 429 SNLPTNLVNN 438



 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 51/215 (23%), Positives = 92/215 (42%), Gaps = 36/215 (16%)

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK--NDISSHISQGKLGE---IIRNGYKI 222
           + +F+ ++           +  K     +++L+  N+ SS I   +L      I+N   +
Sbjct: 7   LINFVISNFSEEFRLISPKYGDKHYRKQLIWLEKENEFSSDIKTAQLEHETPRIKNRI-V 65

Query: 223 VILGHSNAGKSSLFNALAK----------KDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
            I+G  N GKSS+FN + K             ++V D PGTTRD      D  G   +I 
Sbjct: 66  SIVGRPNVGKSSIFNRITKLVIYLNKQKFHYGSVVNDAPGTTRDRQYSIADWNGKYFRII 125

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLY 332
           DT G  +     ++EG+     E+ +      L + N KK     ++++ +    K++ Y
Sbjct: 126 DTGGYDDDQLYSDEEGLTSMDYEIRD-----YLFKHNKKK-----RDLEILLCVNKAESY 175

Query: 333 ---STYTEEY-------DHLISSFTGEGLEELINK 357
                  +E+        + +S+  G GL EL++K
Sbjct: 176 RRGDILAQEFWKLGLGQPYPVSALHGTGLAELLDK 210


>gi|309807822|ref|ZP_07701754.1| tRNA modification GTPase MnmE domain protein [Lactobacillus iners
           LactinV 01V1-a]
 gi|308168924|gb|EFO71010.1| tRNA modification GTPase MnmE domain protein [Lactobacillus iners
           LactinV 01V1-a]
          Length = 69

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 373 IPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
           + +++R    L +  + L E       +  LD++  +L+ A  SLG+ITG    ++L+  
Sbjct: 1   MVTNQRQNDLLRKAKQSLIEAIEAINDNMPLDLVQIDLKEAWDSLGEITGDTAPDELITQ 60

Query: 432 IFSKFCIGK 440
           +FSKFC+GK
Sbjct: 61  LFSKFCLGK 69


>gi|254439098|ref|ZP_05052592.1| GTP-binding proten HflX [Octadecabacter antarcticus 307]
 gi|198254544|gb|EDY78858.1| GTP-binding proten HflX [Octadecabacter antarcticus 307]
          Length = 430

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 28/205 (13%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            LK  +S  +   +L    R       + ++G++NAGKS+LFN L    V  V D+   T
Sbjct: 178 NLKKQLSKVVKTRELHRKARAKVPFPIVALVGYTNAGKSTLFNRLTGASV-FVEDMLFAT 236

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----- 308
            D     +DL  G  + +SDT G             + T  EV  AD+IL +++I     
Sbjct: 237 LDPTMRKVDLPNGDAIIMSDTVGFISDLPTQLVASFRATLEEVLEADVILHVRDISHPQS 296

Query: 309 --------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY----------DHLISSFTGEG 350
                   ++ +++    ++  I +  K DL +    +Y              S+ TG+G
Sbjct: 297 ADQKKAVLDTLRQLDVNPDVPMIEVLNKIDLLAPEDADYLQALHKDGENVFGTSAVTGQG 356

Query: 351 LEELINKIKSILSNKFKKLPFSIPS 375
           L+ L+++I   L    + L  ++  
Sbjct: 357 LDTLLDQITEKLKGTTRALTLTLDW 381


>gi|88802178|ref|ZP_01117706.1| putative GTP-binding protein [Polaribacter irgensii 23-P]
 gi|88782836|gb|EAR14013.1| putative GTP-binding protein [Polaribacter irgensii 23-P]
          Length = 294

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 20/169 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I+T    TTR  +   ++ E Y +  SDT GI +  
Sbjct: 8   VNIIGNPNVGKSTLMNALVGEKLSIITAKAQTTRHRILGIVNEEDYQIVFSDTPGIIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDLYS- 333
             ++   +       E+AD+++ + E+  K+              I  I +  K D  S 
Sbjct: 68  YELQSSMMDFVKSAFEDADILIYMVEVGEKELKNEAFFHRILHSEIPVILLLNKIDKSSQ 127

Query: 334 -TYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFKKLP 370
               E+ ++             S+     +  + +KIK +L       P
Sbjct: 128 EEVEEKIEYWRDKVPNADVFVISALEKFNVPAVFDKIKELLPEGPAFYP 176


>gi|190575413|ref|YP_001973258.1| GTP-binding protein Era [Stenotrophomonas maltophilia K279a]
 gi|226741239|sp|B2FPX8|ERA_STRMK RecName: Full=GTPase Era
 gi|190013335|emb|CAQ46969.1| putative GTP-binding protein [Stenotrophomonas maltophilia K279a]
          Length = 298

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 72/199 (36%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NAL    V+IV++ P TTR  L          + + DT G+ +  
Sbjct: 12  VAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATYPEGQLVLVDTPGLHKVQ 71

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSD--- 330
                  + R     +E  D  LL+ E     E       +     I  + +  K D   
Sbjct: 72  KRAMNRVMNRAARGSLEGVDAGLLVIEAGRWDEEDSLAFNVLRDAGIPVVLVVNKIDRLK 131

Query: 331 -------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                       TE  D    H IS+    GLE L+  +  +L            + +  
Sbjct: 132 EKGALLPFLQQVTEGRDFAAVHPISAQKRNGLEALVRDVLKLLPEAPPMFGEDEITDRSQ 191

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +   + VR   M  L E+
Sbjct: 192 RFLAGELVREQLMRQLGEE 210


>gi|121728973|ref|ZP_01681977.1| GTP-binding protein Era [Vibrio cholerae V52]
 gi|147674346|ref|YP_001217962.1| GTP-binding protein Era [Vibrio cholerae O395]
 gi|262167291|ref|ZP_06035001.1| GTP-binding protein Era [Vibrio cholerae RC27]
 gi|121628739|gb|EAX61206.1| GTP-binding protein Era [Vibrio cholerae V52]
 gi|146316229|gb|ABQ20768.1| GTP-binding protein Era [Vibrio cholerae O395]
 gi|227014352|gb|ACP10562.1| GTP-binding protein Era [Vibrio cholerae O395]
 gi|262024266|gb|EEY42957.1| GTP-binding protein Era [Vibrio cholerae RC27]
          Length = 324

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 30/216 (13%)

Query: 202 DISSHISQGKLG-------EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI ++ +    G       E    G+ + I+G  N GKS+L N L  + ++I +  P TT
Sbjct: 7   DIDAYFASRSEGQTATSTPEDQHCGF-VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTT 65

Query: 255 RDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NS 310
           R  +        Y     DT G+  E    + +   +     + + +L+L + E     +
Sbjct: 66  RHRIMGVETDGNYQAIYVDTPGLHIEEKRAINRLMNRAASSSLSDVNLVLFVVEGTHWTA 125

Query: 311 KKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL--------------ISSFTGEGLE 352
             E+ F K    N   +    K D      E   H+              IS+  G+  +
Sbjct: 126 DDEMVFNKLQKANFPVVLCVNKVDQVKDRNEVMLHMLELSKRMQFVDIVPISAKQGKNTD 185

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            L   ++  L       P    + +   +  S+ VR
Sbjct: 186 VLKKHVRDHLPKAVHHFPEEYVTDRSQRFMASEIVR 221


>gi|315303200|ref|ZP_07873857.1| GTP-binding protein Era [Listeria ivanovii FSL F6-596]
 gi|313628427|gb|EFR96903.1| GTP-binding protein Era [Listeria ivanovii FSL F6-596]
          Length = 301

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 81/211 (38%), Gaps = 23/211 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   +  
Sbjct: 1   MSEPFKSGF-VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFI 323
            DT GI +    +    +K      +  DLI  + + +       +  I   KN      
Sbjct: 60  IDTPGIHKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVF 119

Query: 324 FIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K DL S                 E    IS+  G  +  L+++  + L       P
Sbjct: 120 LLINKIDLISPEELFKLIEQYRELLDFEEIIPISALQGNNVPNLLDQTNANLEIGPMYYP 179

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
               +     + +S+ +R  ++  L  ++  
Sbjct: 180 KDQITDHPERFIISELIRE-QVLQLTREEVP 209


>gi|304373109|ref|YP_003856318.1| GTP-binding protein era-like protein [Mycoplasma hyorhinis HUB-1]
 gi|304309300|gb|ADM21780.1| GTP-binding protein era-like protein [Mycoplasma hyorhinis HUB-1]
 gi|330723266|gb|AEC45636.1| GTPase Era [Mycoplasma hyorhinis MCLD]
          Length = 292

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 20/197 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N+GKS++ N +   D++IV+  P TTRD +      + + +   DT G +  +
Sbjct: 6   VSIIGLPNSGKSTMLNTILDYDLSIVSYKPQTTRDQINGIYSEDDFQIVFVDTPGFQSEN 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---ISFPKN----IDFIFIGTKSDLYS- 333
            +  K   K     +E+ DL L L  +N K +   I   K      + I I TK DL   
Sbjct: 66  SLFSKVLNKNAISSLEDIDLALFLHPVNRKLDQTSIELAKKVLKLKNKIAILTKIDLEED 125

Query: 334 ------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                           E     S       ++L+ +IK  L +          + +   +
Sbjct: 126 NQILAQKANELKQLGFELVLGFSEKYQVSKQDLLEEIKKYLYDSENYFDADFLTDRPMRF 185

Query: 382 HLSQTVRYLEMASLNEK 398
              + +R   + ++ E+
Sbjct: 186 LAKEIIRKHLLLNIEEE 202


>gi|77408568|ref|ZP_00785304.1| GTP-binding protein Era [Streptococcus agalactiae COH1]
 gi|77172842|gb|EAO75975.1| GTP-binding protein Era [Streptococcus agalactiae COH1]
          Length = 299

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK----- 328
             +    ++  +  +   + +L +   + K+        E      I  I +  K     
Sbjct: 68  TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKVH 127

Query: 329 --------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +  LI  +   L   F+  P    +     
Sbjct: 128 PDQLLEQIDDFRSQMDFKEVVPISALQGNNVPTLIKLLTDNLEEGFQYFPEDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 188 FLVSEMVR 195


>gi|319952376|ref|YP_004163643.1| gtp-binding protein era-like-protein [Cellulophaga algicola DSM
           14237]
 gi|319421036|gb|ADV48145.1| GTP-binding protein Era-like-protein [Cellulophaga algicola DSM
           14237]
          Length = 295

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 79/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ + + + +SDT GI +  
Sbjct: 9   VNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGDDFQMILSDTPGIIKPA 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDLYST 334
             ++   +       E+AD+++ + EI  K        E      I  + +  K D+   
Sbjct: 69  YELQSSMMDFVKSAFEDADILIYMVEIGEKALKDERFFEKLKNSKIPVLLLLNKIDVSEQ 128

Query: 335 YTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
              E               H IS+     ++E+  +I  +L       P    + K   +
Sbjct: 129 GILEAQVQYWHEQLPTAEIHPISALQNFNVKEVFLRILELLPVSPAFYPKDQLTDKPERF 188

Query: 382 HLSQTVR 388
            +++T+R
Sbjct: 189 FVNETIR 195


>gi|319940747|ref|ZP_08015088.1| small GTP-binding protein [Sutterella wadsworthensis 3_1_45B]
 gi|319805807|gb|EFW02581.1| small GTP-binding protein [Sutterella wadsworthensis 3_1_45B]
          Length = 414

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 20/167 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  NAGKSSL NAL  + ++IV+D+PGTT D +    +L     V   DTAGI 
Sbjct: 10  IHIGLFGRRNAGKSSLANALTHQHISIVSDVPGTTTDPVEKACELAPIGPVVFIDTAGID 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPKNI---DFIFIGTKSDL 331
           +  ++  +  ++R+   +E  DL L++       N  +EI+          I +  K+DL
Sbjct: 70  DVGELG-RARVERSKTVLEWVDLALIVASAQGLENDDREIAADAKHLGTPAILVLNKADL 128

Query: 332 YSTYTEE-----------YDHLISSFTGEGLEELINKIKSILSNKFK 367
                                +  + T  G++ L   I  I+ +  +
Sbjct: 129 AGGAPSAEVLSDAESLGLPIVITDARTERGVDALRTAIIKIVQDDTE 175


>gi|239909250|ref|YP_002955992.1| GTP-binding protein Era homolog [Desulfovibrio magneticus RS-1]
 gi|239799117|dbj|BAH78106.1| GTP-binding protein Era homolog [Desulfovibrio magneticus RS-1]
          Length = 305

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 80/206 (38%), Gaps = 28/206 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            +V+LG +NAGKS+L N L  + ++IV+  P TTR+ ++  +          DT G+   
Sbjct: 9   HVVMLGPTNAGKSTLLNRLIGQKISIVSPKPQTTRNSISGIITQGDLQAVFLDTPGLHRQ 68

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI------------NSKKEISFPKNIDFIFI--G 326
              +    ++  +  +  AD++LL+ +             + +  +    +     +   
Sbjct: 69  KRGIAPLLLRSAYAALGQADVVLLILDAAQYARRLDGLAPDLRPIVKAVGDGRLPVLIAL 128

Query: 327 TKSDLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            K+D+                         IS+ TG G+++L+  + S L     +    
Sbjct: 129 NKADVVREKARLLPVLAAVSEALPAAELFPISALTGLGVDDLLTALMSRLPEGAHQFDPD 188

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEK 398
             S     +  ++ VR     +L E+
Sbjct: 189 EVSTAPVRFLAAEIVREKLFLALGEE 214


>gi|156083246|ref|XP_001609107.1| GTP-binding protein engA [Babesia bovis T2Bo]
 gi|154796357|gb|EDO05539.1| GTP-binding protein engA, putative [Babesia bovis]
          Length = 353

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 9/127 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           +  +G  N GKSSL N L+  +  +V+   GTT D + + +  +G    + DTAG+R +T
Sbjct: 161 VSFVGRPNCGKSSLVNLLSGTNRCLVSSNEGTTLDNVEVTVSEKGRQYLLIDTAGMRIQT 220

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSDLY 332
            +        R    +  +D+ +L+ + N           E+   +N   + +  K DL 
Sbjct: 221 QNRRSFLPKGRGLNAIRRSDVCVLVIDANWGISRNDLKLAEVIRMENRAAVIVCNKWDLI 280

Query: 333 STYTEEY 339
                 Y
Sbjct: 281 DKDPNVY 287


>gi|218282653|ref|ZP_03488868.1| hypothetical protein EUBIFOR_01454 [Eubacterium biforme DSM 3989]
 gi|218216416|gb|EEC89954.1| hypothetical protein EUBIFOR_01454 [Eubacterium biforme DSM 3989]
          Length = 404

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 12/154 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKSS+ NA+  + +++V++I GTT D +   +++     V I DT G
Sbjct: 25  NRTHIGFFGLRNAGKSSVVNAITNQSMSLVSNIKGTTTDPVKKSMEILPIGPVVIVDTPG 84

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTK 328
           + +   + E   IKRT   ++  D+ +L+ + N    K ++          + +     K
Sbjct: 85  MDDEGTLGELR-IKRTLEVLKTIDMAVLVVDANVGLQKIDLDLIGMFKENKLPYFIAFNK 143

Query: 329 SDLYSTYTE--EYDHLISSFTGEGLEELINKIKS 360
            DL     E    +  +S+   E + EL   + S
Sbjct: 144 CDLIEEKKELASNEIYVSAINKENINELKQLLAS 177


>gi|150003044|ref|YP_001297788.1| GTP-binding protein Era [Bacteroides vulgatus ATCC 8482]
 gi|254883682|ref|ZP_05256392.1| GTP-binding protein Era [Bacteroides sp. 4_3_47FAA]
 gi|294775668|ref|ZP_06741176.1| GTP-binding protein Era [Bacteroides vulgatus PC510]
 gi|319642180|ref|ZP_07996840.1| GTP-binding protein [Bacteroides sp. 3_1_40A]
 gi|149931468|gb|ABR38166.1| putative GTP-binding protein [Bacteroides vulgatus ATCC 8482]
 gi|254836475|gb|EET16784.1| GTP-binding protein Era [Bacteroides sp. 4_3_47FAA]
 gi|294450512|gb|EFG19004.1| GTP-binding protein Era [Bacteroides vulgatus PC510]
 gi|317386166|gb|EFV67085.1| GTP-binding protein [Bacteroides sp. 3_1_40A]
          Length = 293

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 74/163 (45%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   L+ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNLLVGERISIATFKSQTTRHRIMGILNTDDMQIVFSDTPGVVKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFI--FIGTKSDL--- 331
             +++  +  +   + +AD++L + ++  K +     I   +N+      +  K DL   
Sbjct: 67  YKLQESMLNFSESALVDADILLYVTDVVEKTDKNADFIEKVRNVKVPVLLLINKIDLTNQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                     +    +     IS+ +   ++ ++ +IK +L +
Sbjct: 127 EDLVKLVEAWHEQLPQAEIIPISATSKFNVDTVMKRIKELLPD 169


>gi|322385835|ref|ZP_08059478.1| GTP-binding protein Era [Streptococcus cristatus ATCC 51100]
 gi|321270120|gb|EFX53037.1| GTP-binding protein Era [Streptococcus cristatus ATCC 51100]
          Length = 299

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + + I++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIVIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L +   +       +    IS+  G  +  LI+ +   L   F+  P    +     
Sbjct: 128 PDQLLAQIDDFRQQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPEDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|322499842|emb|CBZ34915.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 497

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 105/285 (36%), Gaps = 48/285 (16%)

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSM--EGMSGELSSLYGQWIDKLTHIRSFIEAD 175
               K+DL+  E  + ++ +   +    ++       E        ++ L HI +  + +
Sbjct: 140 LLVNKMDLVPEEEESLVLDAYNRLGLGKAVPFSARKREGLDALSALLEPLYHIHAMRKVE 199

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
            D+    D+++ +       +  +++                   ++ I+G +N+GK+SL
Sbjct: 200 NDW----DIEDLAMAGDEAAMEEIRD-----------RNCTDRYIRVAIVGRTNSGKTSL 244

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI----RETDDIVEKEGIKR 291
            N L   +     D   TTRD + I    +G  +K+ DTAG+      TD          
Sbjct: 245 VNRLVGYERNRAADESNTTRDPIEIACTYKGRKLKLIDTAGLARQRYRTDREFLSRIHSL 304

Query: 292 TFLEVENADLILLLKEINS----KKEISFP-----KNIDFIFIGTKSDLY---STYTEEY 339
           +  E+  A +++++ +       K ++S       +   F+    K D     S   E  
Sbjct: 305 SLNEIRYAHVVIVVFDATEGHPNKYDMSILHKVAQEGRPFVLCANKWDAVLDQSATAEAI 364

Query: 340 DHLI---------------SSFTGEGLEELINKIKSILSNKFKKL 369
           D  I               S+ TG  L  L++++  +     K++
Sbjct: 365 DFKIKRQVQEVKYSNAVVVSAHTGMNLTLLMDQVLELYDTWNKRV 409



 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 27/204 (13%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
              ++ I+G  N+GKSSLFN L +         IV D  G TRD +     L+     + 
Sbjct: 27  QRLRVAIVGRMNSGKSSLFNLLCQDPTMPAKKNIVKDFNGITRDCVEAHAALDDLHFTVI 86

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIF 324
           DT G+      +  + ++  F  VE AD  + +  ++                K +    
Sbjct: 87  DTPGL------IGGKLVEEAFRTVETADAAIFVTAVDEDVSAEEHDLIQYLAAKKMPACL 140

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEG--------LEELINKIKSILSNKFKKLPFSIPSH 376
           +  K DL     E       +  G G          E ++ + ++L   +         +
Sbjct: 141 LVNKMDLVPEEEESLVLDAYNRLGLGKAVPFSARKREGLDALSALLEPLYHIHAMRKVEN 200

Query: 377 KRHLYHLSQTVRYLEMASLNEKDC 400
              +  L+       M  + +++C
Sbjct: 201 DWDIEDLAMAGDEAAMEEIRDRNC 224


>gi|145220317|ref|YP_001131026.1| GTP-binding protein Era [Prosthecochloris vibrioformis DSM 265]
 gi|145206481|gb|ABP37524.1| GTP-binding protein Era [Chlorobium phaeovibrioides DSM 265]
          Length = 308

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 77/193 (39%), Gaps = 26/193 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
             I+G  NAGKS+L NAL    ++IVT  P TTR  +T     +   +   DT GI E  
Sbjct: 14  TSIIGPPNAGKSTLLNALLDCKLSIVTHKPQTTRKKITGIYSDDSTQIIFLDTPGIMEPQ 73

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFIGTK 328
             + +  +K T   +++AD I+ L   + K             ++         I +  K
Sbjct: 74  QKLHEAMLKVTRDTLKDADAIIALLPFSKKNGPFDRAFAEELHRDWLKNSGKPLIAVFNK 133

Query: 329 SDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           SDL                +       IS+  G+GL+EL++ ++  L       P    S
Sbjct: 134 SDLVNAEQQKEAEAFIRREWNPAAILSISALNGKGLQELVDALRPYLPMHDPLYPEDALS 193

Query: 376 HKRHLYHLSQTVR 388
                +  S+ +R
Sbjct: 194 TAPERFFASEIIR 206


>gi|77551765|gb|ABA94562.1| small GTP-binding protein domain containing protein, expressed
           [Oryza sativa Japonica Group]
 gi|218194387|gb|EEC76814.1| hypothetical protein OsI_14944 [Oryza sativa Indica Group]
          Length = 552

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 99/267 (37%), Gaps = 27/267 (10%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++++  M  +L  L   W          ++        E       + +   
Sbjct: 246 AATHEAALQVTLAQMEYQLPRLTKMWSHLERQSGGQVK-----GMGEKQIEVDKRILRTQ 300

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           I  L+ ++ S     KL    R    I    ++G++NAGKS+L N L   DV     +  
Sbjct: 301 ISALRKELESVRKHRKLYRNRRQSVPIPVVSLVGYTNAGKSTLLNRLTGADVLAEDKLFA 360

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--- 309
           T        L   G    ++DT G  +    +     + T  E+  + +I+ L +I+   
Sbjct: 361 TLDPTTRRVLMKNGTEFLLTDTVGFIQKLPTMLVAAFRATLEEISESSVIVHLVDISHPL 420

Query: 310 SKKEISFPKN---------IDFIFIGTKSD-------LYSTYTEEYDHLISSFTGEGLEE 353
           ++++I              I  + +  K D       +     ++    IS+  G+GLEE
Sbjct: 421 AQQQIDAVDKVLKELDIESIPKLVVWNKIDNTDDTLRVKEEAEKQGIICISAINGDGLEE 480

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHL 380
             N I++ L +    +   +P  K  L
Sbjct: 481 FCNAIQAKLKDSLVPIEAFVPYDKGEL 507


>gi|296158233|ref|ZP_06841065.1| GTP-binding protein Era [Burkholderia sp. Ch1-1]
 gi|295891569|gb|EFG71355.1| GTP-binding protein Era [Burkholderia sp. Ch1-1]
          Length = 287

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + V+I +    TTR  +T    LE       DT G +   
Sbjct: 2   VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLEDAQYIFVDTPGFQTKH 61

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P ++  + I  K D  S 
Sbjct: 62  SGALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPSVPTLLIANKLDRVSD 121

Query: 335 YTEEYDHLISSFTGEGLEELI-------NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
               +  +          E++       + IK +++     LP   P +        ++ 
Sbjct: 122 KDSLFPFMQQVSALHKFAEIVPLSAKHPDDIKRLMATVKPFLPEGAPIYGED-DLTDRSE 180

Query: 388 RYLEMASLNEK 398
           R+L    L EK
Sbjct: 181 RFLAAEILREK 191


>gi|157363889|ref|YP_001470656.1| small GTP-binding protein [Thermotoga lettingae TMO]
 gi|157314493|gb|ABV33592.1| small GTP-binding protein [Thermotoga lettingae TMO]
          Length = 403

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 19/164 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           + I G  N GKSS  NA+  ++V+IV+DI GTT D +   ++L     V   DT G  +T
Sbjct: 11  VAIAGRRNVGKSSFLNAIIGQNVSIVSDIAGTTTDPVYKTIELNPVGPVTFIDTPGFDDT 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
            ++     I+R    +  AD  +LL +       +    +     I F+ +  K DL   
Sbjct: 71  GELGRLR-IERARKVLYRADCGILLVDSLPTRYEDDIVSLFREMEIPFLIVVNKEDLLKE 129

Query: 335 YTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFK 367
             +E               +SS   +G E +  KI  IL +  +
Sbjct: 130 KVDELLGVYQQRYGVKTISVSSKLIKGFELIGRKINEILPDDDE 173


>gi|325973342|ref|YP_004250406.1| GTP-binding protein engA [Mycoplasma suis str. Illinois]
 gi|325989778|ref|YP_004249477.1| GTP-binding protein EngA [Mycoplasma suis KI3806]
 gi|323574863|emb|CBZ40523.1| GTP-binding protein EngA [Mycoplasma suis]
 gi|323651944|gb|ADX98026.1| GTP-binding protein engA [Mycoplasma suis str. Illinois]
          Length = 456

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 16/133 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N GKSSL NAL   +  IV+ I GTT D++   +   G    + D+ G ++
Sbjct: 194 VKLGIVGKVNVGKSSLANALLSSNAIIVSPIEGTTVDLVEYSISHNGKTYLLIDSPGWKK 253

Query: 280 ------TDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIF 324
                  ++ ++     R+   ++ A+++L + + +           KEI F  N+  + 
Sbjct: 254 MKKEGLRNEELDHLCWVRSKKAIKAANILLFVIDPSQPINHLDEKVAKEI-FESNLPVVI 312

Query: 325 IGTKSDLYSTYTE 337
           +  K DL S + +
Sbjct: 313 VANKWDLMSYHPD 325



 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 70/176 (39%), Gaps = 21/176 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKIS 272
              +   K++I+G +N GKS LFN L     +IV +    TRD++     L+  + V + 
Sbjct: 4   RRDKKLPKVLIVGATNVGKSQLFNRLIGDRHSIVLNRKSITRDLVMRKTKLKDQHEVILI 63

Query: 273 DTAGIRETDDIVEKEGIKRTFL-EVENADLILLLKE-INSKKEISFP--------KNIDF 322
           D+ G  E      +  I +  + +++ + +IL +   ++  + + +          N   
Sbjct: 64  DSGGYSEELSPNFQSEINQLLINQLKESTIILFMFSKVDGIRAVEWKLSKLIHRYANCPV 123

Query: 323 IFIGTKSDLYSTYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKK 368
           I    K D         +H            S+     + ELI+KI + +    K+
Sbjct: 124 ILAANKIDSNKEEGRWKEHANSLGFGSPILISAEHDINIYELIDKICNFILGDEKQ 179


>gi|302339894|ref|YP_003805100.1| small GTP-binding protein [Spirochaeta smaragdinae DSM 11293]
 gi|301637079|gb|ADK82506.1| small GTP-binding protein [Spirochaeta smaragdinae DSM 11293]
          Length = 414

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 19/178 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  NAGKSS+ NAL K+ V+IV+D  GTT D +   ++L     V   DTAGI 
Sbjct: 10  LHIGIFGKRNAGKSSILNALTKQQVSIVSDQAGTTTDPVEKPMELLPLGPVLFIDTAGID 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISF----PKNIDFIFIGTKSDL 331
           +   +     I+++   ++  D+ L++ E    +  +++       +    I +  K+DL
Sbjct: 70  DEGALGALR-IEKSRRVMDRLDIALIVIEGEKWDHFEDLLLGEFRKRETPVIIVINKTDL 128

Query: 332 YSTYTEEYD----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           Y     E             L+S+    G+ EL  ++   +   F      I    R 
Sbjct: 129 YGREFSELFAKLEEKKLPYVLVSAKEESGILELKQRLLKSVPADFVNEQEIIGDIVRD 186


>gi|289434744|ref|YP_003464616.1| GTP-binding protein Era [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170988|emb|CBH27530.1| GTP-binding protein Era [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|313633219|gb|EFS00091.1| GTP-binding protein Era [Listeria seeligeri FSL N1-067]
          Length = 301

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 80/211 (37%), Gaps = 23/211 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   +  
Sbjct: 1   MSEPFKSGF-VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFI 323
            DT GI +    +    +K      +  DLI  + + +       +  I   KN      
Sbjct: 60  IDTPGIHKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVF 119

Query: 324 FIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K DL S                 E    IS+  G  +  L+ +  + L       P
Sbjct: 120 LLINKIDLISPEELFKLIEQYRELLDFEEIIPISALQGNNVPNLLEQTNANLEVGPMYYP 179

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
               +     + +S+ +R  ++  L  ++  
Sbjct: 180 KDQITDHPERFIISELIRE-QVLQLTREEVP 209


>gi|225458167|ref|XP_002281042.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 547

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 100/266 (37%), Gaps = 24/266 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++++  M  +L  L   W       ++  +      ++ +V     +  +  
Sbjct: 242 AATHEAALQVALAQMEYQLPRLTKMWTH--LERQAGGKVKGMGEKQIEVDKRILRTQIGA 299

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +      +  H  Q +          + ++G++NAGKS+L N L   +V +  D    T 
Sbjct: 300 LKKELESVRQHRKQYRNRRFSVPVPVVSLVGYTNAGKSTLLNRLTGSNV-LAEDRLFATL 358

Query: 256 DVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SK 311
           D  T  + +  G    ++DT G  +    +     + T  E+  + L++ + +I+   ++
Sbjct: 359 DPTTRRVQMKNGREFLLTDTVGFIQKLPTMLVAAFRATLEEISESSLLVHVVDISHPLAE 418

Query: 312 KEISFPKN---------IDFIFIGTKSDLYST--------YTEEYDHLISSFTGEGLEEL 354
           ++I              I  + +  K D  S            E    IS+  G+GL E 
Sbjct: 419 QQIDAVDKVLSELDVLSIPRLMVWNKVDKASNPQKIKLEAEKREDVVCISALNGDGLNEF 478

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHL 380
            N ++  L +    +   +P  K  L
Sbjct: 479 CNAVQEKLKDSMVWVEALVPFDKGEL 504


>gi|182416887|ref|ZP_02948272.1| GTP-binding protein [Clostridium butyricum 5521]
 gi|237669589|ref|ZP_04529568.1| GTP-binding protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379260|gb|EDT76760.1| GTP-binding protein [Clostridium butyricum 5521]
 gi|237654905|gb|EEP52466.1| GTP-binding protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 400

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  NAGKSSL NAL  + +++V++IPGTT D ++  ++L     + + DTAG
Sbjct: 8   NRLHISIFGKRNAGKSSLINALTNQSLSVVSEIPGTTTDPVSKSMELLPLGPIVLIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISF-----PKNIDFIFIGTK 328
           + ++  + E   I++T   +E  DL +L+ +    + K E+++      K I  I +  K
Sbjct: 68  LDDSGLLGELR-IEKTLKVIEKTDLGVLVFDACSKDLKNELTWYADLEKKKIPTIGVINK 126

Query: 329 SDL 331
            DL
Sbjct: 127 IDL 129


>gi|88812350|ref|ZP_01127600.1| GTP-binding protein Era [Nitrococcus mobilis Nb-231]
 gi|88790357|gb|EAR21474.1| GTP-binding protein Era [Nitrococcus mobilis Nb-231]
          Length = 310

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 76/205 (37%), Gaps = 23/205 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R G+   ++G  N GKS+L N L  + V IV+  P TTR  +     L G  +   DT 
Sbjct: 17  LRCGF-AALVGRPNVGKSTLLNTLLGRKVTIVSRKPQTTRHRILGIHTLTGAQIVYVDTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEV-ENADLILLLKEI---NSKKEISFPK----NIDFIFIGT 327
           G+   ++      + RT   V   AD+ + L +      + E    +        I    
Sbjct: 76  GLHRQENTAMNRCLNRTATTVLAEADVAVFLVDALRWTQEDEFVLERLTPFANPVILALN 135

Query: 328 KSD----------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D          L    +   D      +S+  G  L  L  +I   L N     P   
Sbjct: 136 KIDRLRAKQALLPLIDRLSGRRDFAAVVPVSASRGINLAALEAEIVQQLPNSVAYFPQEQ 195

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            + +   +  ++ +R   + +L ++
Sbjct: 196 ITDRSERFMAAELIRERLLKTLGQE 220


>gi|260771921|ref|ZP_05880839.1| GTP-binding protein Era [Vibrio metschnikovii CIP 69.14]
 gi|260613213|gb|EEX38414.1| GTP-binding protein Era [Vibrio metschnikovii CIP 69.14]
          Length = 321

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 30  IAIVGRPNVGKSTLLNNILGQKISITSRKPQTTRHRIMGVDTKGDYQAVYVDTPGLHIEE 89

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L+L + +     +  E+   K    N   +    K D   
Sbjct: 90  KRAINRLMNRAASSSLSDVNLVLFVVDGTHWTADDEMVLNKLRQANFPVVLCINKVDNVK 149

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H+               S+  G+ ++ L   ++  L       P    + +  
Sbjct: 150 DRNDVMRHMQDLSSLMNFVDIVPISAKLGKNIDVLHQHVRHHLPKATHHFPEEYVTDRSQ 209

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 210 RFMASEIIR 218


>gi|316934143|ref|YP_004109125.1| GTP-binding protein Era [Rhodopseudomonas palustris DX-1]
 gi|315601857|gb|ADU44392.1| GTP-binding protein Era [Rhodopseudomonas palustris DX-1]
          Length = 308

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 84/203 (41%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +  +   + + DT G
Sbjct: 14  RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEDASQIILVDTPG 72

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTK 328
           I      +++  +K  +    +ADL+ +L +    IN + E         +   + +  K
Sbjct: 73  IFAPKRRLDRAMVKTAWSGAHDADLVCVLLDARAGINEQAEDILANLANVDRPKLLVLNK 132

Query: 329 SDLYS-------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL +                 +   ++S+ TG+G+++L   + + +       P    S
Sbjct: 133 IDLIAREKLLALAQAANQRLAFDQTFMVSALTGDGVDDLRKALAAQVPEGPFHYPEDQMS 192

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                +  ++  R      L+++
Sbjct: 193 DAPLRHLAAEITREKIFRQLHQE 215


>gi|15642456|ref|NP_232089.1| GTP-binding protein Era [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121590984|ref|ZP_01678303.1| GTP-binding protein Era [Vibrio cholerae 2740-80]
 gi|153820071|ref|ZP_01972738.1| GTP-binding protein Era [Vibrio cholerae NCTC 8457]
 gi|227082581|ref|YP_002811132.1| GTP-binding protein Era [Vibrio cholerae M66-2]
 gi|229507480|ref|ZP_04396985.1| GTP-binding protein Era [Vibrio cholerae BX 330286]
 gi|229512325|ref|ZP_04401804.1| GTP-binding protein Era [Vibrio cholerae B33]
 gi|229519461|ref|ZP_04408904.1| GTP-binding protein Era [Vibrio cholerae RC9]
 gi|229606985|ref|YP_002877633.1| GTP-binding protein Era [Vibrio cholerae MJ-1236]
 gi|254849585|ref|ZP_05238935.1| GTP-binding protein Era [Vibrio cholerae MO10]
 gi|255746869|ref|ZP_05420814.1| GTP-binding protein Era [Vibrio cholera CIRS 101]
 gi|262162034|ref|ZP_06031050.1| GTP-binding protein Era [Vibrio cholerae INDRE 91/1]
 gi|262404773|ref|ZP_06081328.1| GTP-binding protein Era [Vibrio sp. RC586]
 gi|298500183|ref|ZP_07009988.1| GTP-binding protein Era [Vibrio cholerae MAK 757]
 gi|31340514|sp|Q9KPB3|ERA_VIBCH RecName: Full=GTPase Era
 gi|9657038|gb|AAF95602.1| GTP-binding protein Era [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547161|gb|EAX57290.1| GTP-binding protein Era [Vibrio cholerae 2740-80]
 gi|126509383|gb|EAZ71977.1| GTP-binding protein Era [Vibrio cholerae NCTC 8457]
 gi|227010469|gb|ACP06681.1| GTP-binding protein Era [Vibrio cholerae M66-2]
 gi|229344150|gb|EEO09125.1| GTP-binding protein Era [Vibrio cholerae RC9]
 gi|229352290|gb|EEO17231.1| GTP-binding protein Era [Vibrio cholerae B33]
 gi|229354985|gb|EEO19906.1| GTP-binding protein Era [Vibrio cholerae BX 330286]
 gi|229369640|gb|ACQ60063.1| GTP-binding protein Era [Vibrio cholerae MJ-1236]
 gi|254845290|gb|EET23704.1| GTP-binding protein Era [Vibrio cholerae MO10]
 gi|255735271|gb|EET90671.1| GTP-binding protein Era [Vibrio cholera CIRS 101]
 gi|262028283|gb|EEY46940.1| GTP-binding protein Era [Vibrio cholerae INDRE 91/1]
 gi|262349805|gb|EEY98943.1| GTP-binding protein Era [Vibrio sp. RC586]
 gi|297540876|gb|EFH76930.1| GTP-binding protein Era [Vibrio cholerae MAK 757]
          Length = 325

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 31/217 (14%)

Query: 202 DISSHISQGKLGEII--------RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           DI ++ +    G+ +          G+ + I+G  N GKS+L N L  + ++I +  P T
Sbjct: 7   DIDAYFASQSEGKSVVASTPENQHCGF-VAIVGRPNVGKSTLLNNLLGQKISITSRKPQT 65

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---N 309
           TR  +        Y     DT G+  E    + +   +     + + +L+L + E     
Sbjct: 66  TRHRIMGVETDGNYQAIYVDTPGLHIEEKRAINRLMNRAASSSLSDVNLVLFVVEGTHWT 125

Query: 310 SKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL--------------ISSFTGEGL 351
           +  E+ F K    N   +    K D      E   H+              IS+  G+  
Sbjct: 126 ADDEMVFTKLQKANFPVVLCVNKVDQVKDRNEVMLHMLELSKRMQFVDIVPISAKQGKNT 185

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           + L   ++  L       P    + +   +  S+ VR
Sbjct: 186 DVLKKHVRDHLPKAVHHFPEEYVTDRSQRFMASEIVR 222


>gi|159184589|ref|NP_354059.2| GTP-binding protein Era [Agrobacterium tumefaciens str. C58]
 gi|159139891|gb|AAK86844.2| GTP-binding protein, Era family [Agrobacterium tumefaciens str.
           C58]
          Length = 313

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G +NAGKS+L N L    V+IV+    TTR V+      +   +   DT G
Sbjct: 19  RSGF-VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAVMRGIAIHKNAQIVFMDTPG 77

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFI--GTK 328
           I +    +++  +   +   ++ADLILLL +       +++  +   K++    I    K
Sbjct: 78  IFKPRRRLDRAMVTSAWGGAKDADLILLLIDSERGLKGDAEAILEGLKDVPQKKILCLNK 137

Query: 329 SDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D                    +   +IS+  G G E+L++ +   L       P    S
Sbjct: 138 IDQVKREDLLKLAAAANEKVAFDRTFMISATNGSGCEDLMDYLVETLPEGPWYYPEDQIS 197

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+++
Sbjct: 198 DLPMRQLAAEITREKLFLRLHQE 220


>gi|309388936|gb|ADO76816.1| GTP-binding protein Era [Halanaerobium praevalens DSM 2228]
          Length = 293

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 82/193 (42%), Gaps = 21/193 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L N L  + + I++  P TTR+ +          +   DT 
Sbjct: 3   YKSGF-VTVIGRPNVGKSTLVNTLIGEKINIISPRPQTTRNSIKAIYTEAEGQIIFIDTP 61

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISFPK----NIDFIFIGT 327
           GI E  + ++K      +  ++  D+I+ + + ++      E+ + +      D I++  
Sbjct: 62  GIHEARNELDKYMQGEAYNSLDGIDIIIFILDGSTYWGKNDEMIYKQLKSSKQDIIYVMN 121

Query: 328 KSDL------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           K D             YS    +    IS+   +  + L+ +I + L    +  P  + +
Sbjct: 122 KIDKMSNKDLIKRQKEYSQKVGQEVIPISALNNKNTDTLLTEIFNRLPEGPQYYPDDMIT 181

Query: 376 HKRHLYHLSQTVR 388
            +   +  ++ +R
Sbjct: 182 DQIERFVFAEMIR 194


>gi|270158385|ref|ZP_06187042.1| GTP-binding protein HflX [Legionella longbeachae D-4968]
 gi|289163370|ref|YP_003453508.1| GTPase [Legionella longbeachae NSW150]
 gi|269990410|gb|EEZ96664.1| GTP-binding protein HflX [Legionella longbeachae D-4968]
 gi|288856543|emb|CBJ10338.1| putative GTPase [Legionella longbeachae NSW150]
          Length = 419

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 107/288 (37%), Gaps = 23/288 (7%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ + 
Sbjct: 114 RARTFEGKLQVELAQLQHLSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q +      +   + ++G++NAGKS+LFNAL  + +  V +    T
Sbjct: 173 YINKRLEKVRSSRDQNRQARRKASLRTVSLVGYTNAGKSTLFNALTGESI-YVANQLFAT 231

Query: 255 RDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     L+L G   V ++DT G          E  + T  E + ADL+L + +I+    
Sbjct: 232 LDPTMRQLNLPGSSSVIVTDTVGFIRDLPHHLVEAFRATLEETQQADLLLHVIDISDPHW 291

Query: 313 -----------EISFPKNIDFIFIGTKSDLYSTYTEEYDH-------LISSFTGEGLEEL 354
                      +     ++  I +  K DL   +  + D+        +S+ +  GL+ L
Sbjct: 292 RDNVFSVQQVLDELEVHDVPIIQVFNKIDLKEGWEPKIDYQEEKCKVWLSAASNLGLDLL 351

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
              I + L          + + +  L      +  +   S+N++   L
Sbjct: 352 KEAISTQLHGAISTEEVVLKATQAKLRAQLYQLGSVLSESINDEGDWL 399


>gi|53715372|ref|YP_101364.1| GTP-binding protein Era [Bacteroides fragilis YCH46]
 gi|52218237|dbj|BAD50830.1| putative GTP-binding protein [Bacteroides fragilis YCH46]
          Length = 293

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 71/163 (43%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +    + +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNVLVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++       N   +    ++   + +  K DL   
Sbjct: 67  YKLQESMLNFSTSALADADVLLYVTDVIETPDKNNEFIQKVRQQSAPILLLINKIDLTDQ 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                          +     IS+ T   ++ ++ +IK +L +
Sbjct: 127 EKLVKLVEGWKELLPQAEIIPISAATKFNVDYVMKRIKDLLPD 169


>gi|116872893|ref|YP_849674.1| GTP-binding protein Era [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123461073|sp|A0AIR3|ERA_LISW6 RecName: Full=GTPase Era
 gi|116741771|emb|CAK20895.1| GTP-binding protein Era [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 301

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 80/211 (37%), Gaps = 23/211 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   +  
Sbjct: 1   MSEPFKSGF-VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFI 323
            DT GI +    +    +K      +  DLI  + + +       +  I   KN      
Sbjct: 60  IDTPGIHKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVF 119

Query: 324 FIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K DL S                 E    IS+  G  +  L+ +  + L       P
Sbjct: 120 LLINKIDLISPEDLFKLIEQYRELLDFEEIIPISALQGNNVPNLLEQTNANLEIGPMYYP 179

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
               +     + +S+ +R  ++  L  ++  
Sbjct: 180 KDQITDHPERFIISELIRE-QVLQLTREEVP 209


>gi|322411296|gb|EFY02204.1| GTP-binding protein Era [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 261

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 7   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK----- 328
             +    ++  +  +   + +L +   + K+        E      I  I +  K     
Sbjct: 67  TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKVH 126

Query: 329 --------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS   G  +  LI  +   L   F+  P    +     
Sbjct: 127 PDQLLAQIDDFRSQMEFKEVVPISGLEGNNVPTLIKLLTDNLEEGFQYFPEDQITDHPER 186

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 187 FLVSEMIR 194


>gi|225548859|ref|ZP_03769836.1| GTP-binding protein Era [Borrelia burgdorferi 94a]
 gi|225370462|gb|EEG99898.1| GTP-binding protein Era [Borrelia burgdorferi 94a]
          Length = 290

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+   ILG  + GKS+L N++    ++I++ IP TTR+ +      +   +   DT 
Sbjct: 1   MKSGF-AAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGT 327
           G   +        +K  +  +   +LIL + +I  K         EI     I F+ I  
Sbjct: 60  GFHLSKKKFNIAMMKNIYSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILN 119

Query: 328 KSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL +T  +E                 IS+      EEL NKI    S      P    
Sbjct: 120 KIDLENTKIKEITQFLKEKGIEDSNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYY 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +   + +S+ +R   + +L E+
Sbjct: 180 TDQEINFRISEIIREKAIENLKEE 203


>gi|296315047|ref|ZP_06864988.1| GTP-binding protein Era [Neisseria polysaccharea ATCC 43768]
 gi|296838255|gb|EFH22193.1| GTP-binding protein Era [Neisseria polysaccharea ATCC 43768]
          Length = 311

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 75/210 (35%), Gaps = 24/210 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +     R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 6   DIETFLAGERTVGGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 64

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLK------EINSKKEI 314
              +       DT G +        + + +     +   D ++ +       + +     
Sbjct: 65  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDADRVVLK 124

Query: 315 SFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELINKI 358
             PK+   I +  K D                + + +       +S+  G  +  L+  I
Sbjct: 125 QLPKHTPVILVVNKIDKDKAKDRYALETFVAQVRAEFEFAAAEAVSAKHGLRIANLLELI 184

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           K  L       P  + + K   +   + VR
Sbjct: 185 KPYLPESVPMYPEDMVTDKSARFLAMEIVR 214


>gi|260775207|ref|ZP_05884105.1| GTP-binding protein Era [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608908|gb|EEX35070.1| GTP-binding protein Era [Vibrio coralliilyticus ATCC BAA-450]
          Length = 324

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N +  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 33  VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDTPGLHIEE 92

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L+  L +        E+   K    N   +    K D   
Sbjct: 93  KRAINRLMNRAANSSLSDVNLVFFLVDGTHWTKDDEMVLTKLQKSNFPVVLCVNKVDNVQ 152

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H++              S+  G+ ++ L   ++  L       P    + +  
Sbjct: 153 DRNDVMLHMMDMSKKMEFVDVVPISAKQGKNIDVLRKHVREHLPKAAHHFPEEYVTDRSQ 212

Query: 380 LYHLSQTVR 388
            +  S+ VR
Sbjct: 213 RFMASEIVR 221


>gi|76799814|ref|ZP_00781875.1| GTP-binding protein Era [Streptococcus agalactiae 18RS21]
 gi|76584832|gb|EAO61529.1| GTP-binding protein Era [Streptococcus agalactiae 18RS21]
          Length = 242

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKS---- 329
             +    ++  +  +   + +L +   + K+        E      I  I +  K     
Sbjct: 68  TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKVH 127

Query: 330 ---------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                    D  S    +    IS+  G  +  LI  +   L   F+  P    +     
Sbjct: 128 PDQLLEQIDDFRSQMDFKEVVPISALQGNNVPTLIKLLTDNLEEGFQYFPEDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 188 FLVSEMVR 195


>gi|300087259|ref|YP_003757781.1| ferrous iron transport protein B [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299526992|gb|ADJ25460.1| ferrous iron transport protein B [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 676

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 19/159 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI ++G  N GKSSLF+ L  +   I+++ PGTT DV      ++G   ++ DT G+  
Sbjct: 32  LKIALVGSPNVGKSSLFHRLTGR-RVIISNYPGTTVDVFRGQAVIQGRQAEVVDTPGMYS 90

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYS 333
              I E+E + R  L  E  D+IL + +  + + +           +  + +    D   
Sbjct: 91  LHSITEEERVARAILLKEKPDVILHVVDAKNLERMLPLTYQLIEGGLPVLLVLNMMDETE 150

Query: 334 TYTEEYD------------HLISSFTGEGLEELINKIKS 360
               + +               S+    G+ EL   I S
Sbjct: 151 ALGIDIEVGRLSSVLGIPVVTTSASLDRGITELKKAIAS 189


>gi|253567261|ref|ZP_04844711.1| GTP-binding protein Era [Bacteroides sp. 3_2_5]
 gi|265767859|ref|ZP_06095391.1| GTP-binding protein Era [Bacteroides sp. 2_1_16]
 gi|251944092|gb|EES84611.1| GTP-binding protein Era [Bacteroides sp. 3_2_5]
 gi|263252531|gb|EEZ24059.1| GTP-binding protein Era [Bacteroides sp. 2_1_16]
          Length = 293

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 71/163 (43%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +    + +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNVLVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++       N   +    ++   + +  K DL   
Sbjct: 67  YKLQESMLNFSTSALADADVLLYVTDVIETPDKNNEFIQKVRQQSAPILLLINKIDLTDQ 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                          +     IS+ T   ++ ++ +IK +L +
Sbjct: 127 EKLVKLVEEWKELLPQAEIIPISAATKFNVDYVMKRIKDLLPD 169


>gi|167837347|ref|ZP_02464230.1| GTP-binding protein Era [Burkholderia thailandensis MSMB43]
          Length = 299

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    L+       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYIFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P     + +  K D  S 
Sbjct: 74  STALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPGTPTLLVANKLDRVSD 133

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               Y                  S+   E +E L+N +K  L            + +   
Sbjct: 134 KGTLYPFFQKMGELREFAEIVPLSAKHPEDIERLMNTVKPYLPEGDAIYGEDDLTDRSSR 193

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 194 FLAAEILR 201


>gi|170695423|ref|ZP_02886568.1| GTP-binding protein Era [Burkholderia graminis C4D1M]
 gi|170139614|gb|EDT07797.1| GTP-binding protein Era [Burkholderia graminis C4D1M]
          Length = 287

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + V+I +    TTR  +T    LE       DT G +   
Sbjct: 2   VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLEDVQYIFVDTPGFQTKH 61

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P ++  + I  K D  S 
Sbjct: 62  SGALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPSVPTLLIANKLDRVSD 121

Query: 335 YTEEYDHLISSFTGEGLEELI-------NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
               +  +          E++       + IK +++     LP   P +        ++ 
Sbjct: 122 KDSLFPFMQQMSALRPFNEIVPLSAKNPDDIKRLMATIKPYLPEGAPIYGED-DLTDRSE 180

Query: 388 RYLEMASLNEK 398
           R+L    L EK
Sbjct: 181 RFLAAEILREK 191


>gi|309972853|gb|ADO96054.1| GTP-binding protein [Haemophilus influenzae R2846]
          Length = 302

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 13  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----------NIDFIFIG 326
              + +   +     + + DLI+ + +    N+  E+   K                 I 
Sbjct: 73  KRAINRLMNRAASSAIGDVDLIIFVVDGTHWNADDEMVLNKLRNAKAPVVLAINKVDNIK 132

Query: 327 TKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL    T+        +   IS+  G  + EL   ++  L       P    + +  
Sbjct: 133 NKDDLLPFITDLSGKFNFAHIVPISAQRGNNIHELEKIVRQSLREGVHHFPEDYVTDRSQ 192

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 193 RFMASEIIR 201


>gi|198274288|ref|ZP_03206820.1| hypothetical protein BACPLE_00430 [Bacteroides plebeius DSM 17135]
 gi|198272778|gb|EDY97047.1| hypothetical protein BACPLE_00430 [Bacteroides plebeius DSM 17135]
          Length = 293

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 70/163 (42%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   L+ E   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNLLVGERISIATFKAQTTRHRIMGILNTEDMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDL--- 331
             +++  +  +   + +AD++L + +   K        E      +  + +  K DL   
Sbjct: 67  YKLQESMLNFSESALVDADVLLYVTDTVEKPDKNAEFMEKVRNLKVPVLLLINKIDLTNQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                     +    E     IS+     ++ ++ +IK +L +
Sbjct: 127 EDLVKLVDEWHEMLPEAEIIPISAMAKFNVDVVMKRIKELLPD 169


>gi|149371535|ref|ZP_01890951.1| putative GTP-binding protein [unidentified eubacterium SCB49]
 gi|149355162|gb|EDM43722.1| putative GTP-binding protein [unidentified eubacterium SCB49]
          Length = 293

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 77/187 (41%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +  
Sbjct: 8   VNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQMLLSDTPGIIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDL--- 331
             ++   +       E+AD++L L E+  K        +      I  + +  K D    
Sbjct: 68  YELQASMMDFVKSAFEDADVLLYLVELGEKDLKDEKFFDKITNAKIPVLLLLNKIDQGNE 127

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                      +         IS+    G++E+ N I  +L       P    + K   +
Sbjct: 128 EQLGEALTFWQAKVPNATVFAISALENFGVQEVFNHIIELLPESPPFYPKDQLTDKPERF 187

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 188 FVNEIIR 194


>gi|210633084|ref|ZP_03297651.1| hypothetical protein COLSTE_01559 [Collinsella stercoris DSM 13279]
 gi|210159238|gb|EEA90209.1| hypothetical protein COLSTE_01559 [Collinsella stercoris DSM 13279]
          Length = 429

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 102/276 (36%), Gaps = 31/276 (11%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           + + T   R          L          L   ++       F + E       + + N
Sbjct: 122 LHARTREGRLQVQLAQLQYLLPRLRGMWTHLAKEQTRGGIGSRFGQGESQLEVDRRMIRN 181

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  L+ +++    +  +    R G   ++I + G++NAGKSSL N L   DV +  D  
Sbjct: 182 RIASLRKELAVVERRRAVQSKSRTGSLAFRIALAGYTNAGKSSLLNRLTGSDV-LAQDKL 240

Query: 252 GTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D  T   +L  G  + I+DT G  +       E  K T  EV +ADLIL + +++ 
Sbjct: 241 FATLDPTTRSYELPGGRAITITDTVGFIQKLPHGLVEAFKSTLSEVRDADLILKVVDVSD 300

Query: 311 KKEISFPKNIDFIF------------IGTKSDLYSTYTEEY-------DHLISSFTGEGL 351
           +      +++D +             +  K DL      E            S+ TG G+
Sbjct: 301 EDRDRQIESVDRVLCDVHAESQRALTVYNKIDLLDPSEVERLKRRHPDALFFSARTGAGI 360

Query: 352 EELINKIK-------SILSNKFKKLPFSIPSHKRHL 380
           EEL  +I         ++S +      ++ +  R  
Sbjct: 361 EELRQRIAREAALTDELMSCEIPYGEGALMAAIRQQ 396


>gi|307730526|ref|YP_003907750.1| GTP-binding protein Era [Burkholderia sp. CCGE1003]
 gi|307585061|gb|ADN58459.1| GTP-binding protein Era [Burkholderia sp. CCGE1003]
          Length = 287

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 70/191 (36%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + V+I +    TTR  +T    LE       DT G +   
Sbjct: 2   VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLEDAQYIFVDTPGFQTKH 61

Query: 282 DIVEKEGIKRTFLEVENA-DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R       A D IL + E       + K     P ++  + I  K D  S 
Sbjct: 62  SSALNRSLNRAVTSTLTAVDAILFVIEAGRFGADDQKVLDLIPPSVPTLLIANKLDRVSD 121

Query: 335 YTEEYDHLISSFTGEGLEELI-------NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
               Y  +          E++       + IK +++     LP   P +        ++ 
Sbjct: 122 KDSLYPFMQQMSALRPFNEIVPLSAKNPDDIKRLMATVKPYLPEGAPIYGED-DLTDRSE 180

Query: 388 RYLEMASLNEK 398
           R+L    L EK
Sbjct: 181 RFLAAEILREK 191


>gi|58040242|ref|YP_192206.1| GTP-binding protein Era [Gluconobacter oxydans 621H]
 gi|58002656|gb|AAW61550.1| GTP-binding protein [Gluconobacter oxydans 621H]
          Length = 295

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +A   ++IV+    TTR      +  +   + + D  G
Sbjct: 4   RCGF-VALVGAPNAGKSTLLNRIAGAKLSIVSPKAQTTRFRTLGIVMQDNAQIILVDLPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           I +    +++  +   +   ++ADL LLL +  S       +              +  K
Sbjct: 63  IFKPRRRLDRAMVNAAWSGSQDADLTLLLVDAKSGLREDVREIIAKLAESKNRIWLVLNK 122

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +DL                   E+  ++S+ +GEG+ +L+ ++ + L       P    +
Sbjct: 123 TDLVERGELLPLTQEISGLINVEHVFMLSARSGEGVSDLMARLAAELPEGPFLYPEDDLT 182

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++ VR       +E+
Sbjct: 183 DLPDRLLAAELVREQIFMQTHEE 205


>gi|225551797|ref|ZP_03772740.1| GTP-binding protein Era [Borrelia sp. SV1]
 gi|225371592|gb|EEH01019.1| GTP-binding protein Era [Borrelia sp. SV1]
          Length = 290

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+   ILG  + GKS+L N++    ++I++ IP TTR+ +      +   +   DT 
Sbjct: 1   MKSGF-AAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGT 327
           G   +        +K     +   +LIL + +I  K         EI     I F+ I  
Sbjct: 60  GFHLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILN 119

Query: 328 KSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL +T  +E                 IS+      EEL NKI    S      P    
Sbjct: 120 KIDLKNTKIKEITQFLKEKGIEDNNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYY 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +   + +S+ +R   + +L E+
Sbjct: 180 TDQEINFRISEIIREKAIENLKEE 203


>gi|25008423|sp|Q8UGK1|ERA_AGRT5 RecName: Full=GTPase Era
          Length = 317

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G +NAGKS+L N L    V+IV+    TTR V+      +   +   DT G
Sbjct: 23  RSGF-VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAVMRGIAIHKNAQIVFMDTPG 81

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFI--GTK 328
           I +    +++  +   +   ++ADLILLL +       +++  +   K++    I    K
Sbjct: 82  IFKPRRRLDRAMVTSAWGGAKDADLILLLIDSERGLKGDAEAILEGLKDVPQKKILCLNK 141

Query: 329 SDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D                    +   +IS+  G G E+L++ +   L       P    S
Sbjct: 142 IDQVKREDLLKLAAAANEKVAFDRTFMISATNGSGCEDLMDYLVETLPEGPWYYPEDQIS 201

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+++
Sbjct: 202 DLPMRQLAAEITREKLFLRLHQE 224


>gi|256810716|ref|YP_003128085.1| ferrous iron transport protein B [Methanocaldococcus fervens AG86]
 gi|256793916|gb|ACV24585.1| ferrous iron transport protein B [Methanocaldococcus fervens AG86]
          Length = 669

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 29/214 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS+LFNAL  ++V I  + PG T +    + +  G   K+ D  G+  
Sbjct: 5   YEIALIGNPNVGKSTLFNALTGENVYI-GNWPGVTVEKKEGEFEYNGKKFKVVDLPGVYS 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                  E I R ++  E  DL++ + +  + +              + + +  K DL +
Sbjct: 64  LTADSIDEIIARDYIINEKPDLVVNIADATALERNLYLTLQLMEMGANILLVLNKMDLAN 123

Query: 334 TYTEEYDHL------------ISSFTGEGLEELINKIKSILSNK---FKKLPFSIPSHKR 378
               E D              IS+    G+E+L   I   + NK     + P   P  K+
Sbjct: 124 KLGMEIDINKLEKILGIKVVPISAVKKIGIEDLKKAILETVKNKKSAEIRYPHFEPYIKK 183

Query: 379 HLYHLSQ-------TVRYLEMASLNEKDCGLDII 405
            +  L +        +RYL +  L      LDI+
Sbjct: 184 IISILEKDEGLKKYNLRYLAIKLLENDKYVLDIV 217


>gi|222151466|ref|YP_002560622.1| hypothetical protein MCCL_1219 [Macrococcus caseolyticus JCSC5402]
 gi|222120591|dbj|BAH17926.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 300

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+  N +  + VAI++D   TTR+ +   L  E   +   DT GI +  
Sbjct: 10  VAIIGRPNVGKSTFMNKVLGQKVAIMSDKAQTTRNKVQGVLTTEQSQIIFIDTPGIHKPK 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNI--DFIFIGTKSDLY- 332
            ++    +K     +   D IL +  +        +  I   KN       +  K D   
Sbjct: 70  HMLGDYMMKVAKNTLREVDAILFMVNVEESIGRGDEFIIELLKNNRTPIFLVLNKIDKIH 129

Query: 333 -STYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                +E +             IS+  G  ++ L+  I+  +       P    S     
Sbjct: 130 PDELIKEIEKYKDLLPFAEIVPISALQGNNVDHLVKVIERYMPEGPMYYPKDQISDHPEE 189

Query: 381 YHLSQTVR 388
           + +++ +R
Sbjct: 190 FIVAELIR 197


>gi|163851698|ref|YP_001639741.1| GTP-binding protein Era [Methylobacterium extorquens PA1]
 gi|163663303|gb|ABY30670.1| GTP-binding protein Era [Methylobacterium extorquens PA1]
          Length = 326

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 22/202 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +QG+  E  R G+ + ++G  NAGKS+L NAL    V+IV+    TTR ++   +     
Sbjct: 23  AQGQPREETRAGF-VALIGVPNAGKSTLLNALVGAKVSIVSRKVQTTRALVRGIVMEGNA 81

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------N 319
            + + DT GI      +++  +   +    +AD + LL +     +              
Sbjct: 82  QIVLVDTPGIFAPKRRLDRAMVHSAWSGAADADAVCLLIDARKGADEEVETILRRLPEVK 141

Query: 320 IDFIFIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
              I I  K DL +                 E   LIS+  G+G+ +L   + + +    
Sbjct: 142 RPKILILNKIDLIARERLLELVAKLNAMVPFEDTFLISALKGDGIADLRKALAARMPPSP 201

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
              P    S        ++  R
Sbjct: 202 WLYPEDQISDAPLRMLAAEITR 223


>gi|225455575|ref|XP_002268933.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 737

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 73/198 (36%), Gaps = 24/198 (12%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           + +L + +D  S  +     E  ++  ++ I+G  N GKS+L N L +++  +V    G 
Sbjct: 310 DHMLQVLDDKGSQENSSCDVEESKSPLQLAIVGRPNVGKSTLLNTLLQENRVLVGPEAGL 369

Query: 254 TRDVLTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           TRD +      +G  V + DTAG     + +       + ++   +  A ++ L+ +   
Sbjct: 370 TRDSVRAQFQFQGRTVYLVDTAGWLQRTKQEKGPASLSVMQSRKSIMRAHVVALVLDAEE 429

Query: 311 KKEI--------------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                             +  +    + I  K DL            S    + +E +  
Sbjct: 430 IANARSSMKHAEVVIARRAVEEGRGLVVIVNKMDLLKGRKN------SKLYEKVMEAVPE 483

Query: 357 KIKSILSNKFKKLPFSIP 374
           +I  ++  +   +P    
Sbjct: 484 EI-QMVIPQVTGIPVVFI 500



 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 74/208 (35%), Gaps = 33/208 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIP--GTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           ++++G  N GKS+LFN       A+V + P    TRD       L     ++ D+AG+  
Sbjct: 145 VILVGRPNVGKSALFNR-----EALVYNTPDDHVTRDFREGIAKLGDLRFRVLDSAGLEM 199

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIGT 327
             T   +       T   +  +   + L ++ +          K        I  I +  
Sbjct: 200 AATSGSILGRTADMTANVLARSQFAIFLIDVRAGLHPMDLEVGKWLRRHAPGICTILVMN 259

Query: 328 KSDLYSTYTEEY--------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           KS+                          IS+ TG G+ EL   ++ +L +   ++    
Sbjct: 260 KSESLDDGAGLLAAAAGEAYELGFGDPIAISAETGLGMAELYESLRPLLEDHMLQVLDDK 319

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            S +     + ++   L++A +   + G
Sbjct: 320 GSQENSSCDVEESKSPLQLAIVGRPNVG 347


>gi|223889472|ref|ZP_03624058.1| GTP-binding protein Era [Borrelia burgdorferi 64b]
 gi|223885158|gb|EEF56262.1| GTP-binding protein Era [Borrelia burgdorferi 64b]
          Length = 290

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+   ILG  + GKS+L N++    ++I++ IP TTR+ +      +   +   DT 
Sbjct: 1   MKSGF-AAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGT 327
           G   +        +K     +   +LIL + +I  K         EI     I F+ I  
Sbjct: 60  GFHLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILN 119

Query: 328 KSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL +T  +E                 IS+      EEL NKI    S      P    
Sbjct: 120 KIDLKNTKIKEITQFLKEKGIEDSNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYY 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +   + +S+ +R   + +L E+
Sbjct: 180 TDQEINFRISEIIREKAIENLKEE 203


>gi|541363|pir||B36933 Era homolog - Streptococcus mutans (fragment)
 gi|2749952|gb|AAC38048.1| G-protein [Streptococcus mutans]
          Length = 169

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 21/162 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLY- 332
             +    ++  +  +   D +L +   + K+        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDNMIIERLKAAKVPVILVINKIDKVH 127

Query: 333 -STYTEEYD-----------HLISSFTGEGLEELINKIKSIL 362
                E+ D             IS+  G  +  L++ +   L
Sbjct: 128 PDQLLEQIDDFRNQMDFQEIVPISALQGNNVSHLVDLLVDHL 169


>gi|59712693|ref|YP_205469.1| GTP-binding protein Era [Vibrio fischeri ES114]
 gi|59480794|gb|AAW86581.1| membrane-associated, 16S rRNA-binding GTPase [Vibrio fischeri
           ES114]
          Length = 321

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 77/211 (36%), Gaps = 24/211 (11%)

Query: 202 DISSHISQGKLGEIIRNGYK--IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           D+ ++ +  K  E+  N +   I I+G  N GKS+L N +  + ++I +  P TTR  + 
Sbjct: 8   DLDAYFASEKKSEVSDNQHCGFIAIVGRPNVGKSTLLNQILGQKISITSRKPQTTRHRIM 67

Query: 260 IDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEIS 315
                  Y     DT G+  E    + +   +     + + +L+L L +        E+ 
Sbjct: 68  GVDTDGDYQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVLFLVDGTHWTPDDEMV 127

Query: 316 FPK----NIDFIFIGTKSDLYSTYTEEYDH--------------LISSFTGEGLEELINK 357
             K        + +  K D      +   H               IS+ TG  ++ +   
Sbjct: 128 LNKLKKSEFPTVLLVNKVDNVKDKKDVMTHLQEMTEKMDFVDVVPISAKTGSNVDVVHKL 187

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           ++  L       P    + +   +  S+ +R
Sbjct: 188 VREYLPKAVHHFPEEYVTDRSQRFMASEIIR 218


>gi|325294622|ref|YP_004281136.1| GTP-binding proten HflX [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065070|gb|ADY73077.1| GTP-binding proten HflX [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 357

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 100/256 (39%), Gaps = 30/256 (11%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            + T+  +       +    S       +L+ +   I        + +V+    ++ ++ 
Sbjct: 103 RARTKEAKLQVELAKASYQLSHLRGKGKELSRLGGGIGTRGPGETKTEVEARVLRKKIHK 162

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +     +I    S  +     +N   I ++G++N GKS+L  AL KKDV I  +IP  T 
Sbjct: 163 LKKEIEEIEKRYSLVRESRKRKNFITIAVVGYTNVGKSTLVKALTKKDVFI-KNIPFATL 221

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           DV T  L LE   V ISDT G             K T  EV+ +D++L++ +++SKK   
Sbjct: 222 DVKTGSLYLEDKKVLISDTVGFIRNLPHELIASFKATLGEVKESDILLIVFDVSSKKLEE 281

Query: 316 FPK------------NIDFIFIGTKSD---------------LYSTYTEE--YDHLISSF 346
             K            N   IF+  K+D               L     EE      IS+ 
Sbjct: 282 ELKSVKEVLKKLGAWNKPKIFVANKTDCIVDSYEKSQILYTELLGKLPEEDAPTVFISAK 341

Query: 347 TGEGLEELINKIKSIL 362
            G G E L  +I   L
Sbjct: 342 FGWGFENLKLEITKFL 357


>gi|302393066|ref|YP_003828886.1| iron-only hydrogenase maturation protein HydF [Acetohalobium
           arabaticum DSM 5501]
 gi|302205143|gb|ADL13821.1| iron-only hydrogenase maturation protein HydF [Acetohalobium
           arabaticum DSM 5501]
          Length = 411

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 18/168 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I ILG  NAGKSSL NAL  +D+A+V+ + GTT D +   +++     V + DTAG
Sbjct: 8   NRLHIAILGRRNAGKSSLINALTNQDLAVVSKVAGTTTDPVYKRMEILPIGPVVVIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIG--TK 328
           I +T ++ +   +K+T   +   DL +L+ +         ++ +   K+ D   +G   K
Sbjct: 68  IDDTGELGDLR-VKKTKEVLGRTDLAVLVIDPELGIDEYEQELLQEIKDRDIPVVGVINK 126

Query: 329 SDLY-----STYTEEYD---HLISSFTGEGLEELINKIKSILSNKFKK 368
            D +     + + EE       +S+  G  +E+L  +I      KF++
Sbjct: 127 EDKFEEIDVAEFNEELGMELIAVSAKEGTNIEKLKKEIIIKAPEKFEE 174


>gi|229521287|ref|ZP_04410707.1| GTP-binding protein Era [Vibrio cholerae TM 11079-80]
 gi|229341819|gb|EEO06821.1| GTP-binding protein Era [Vibrio cholerae TM 11079-80]
          Length = 324

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 30/216 (13%)

Query: 202 DISSHISQGKLG-------EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI ++ +    G       E    G+ + I+G  N GKS+L N L  + ++I +  P TT
Sbjct: 7   DIDAYFASRSEGQTATSTPEEQHCGF-VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTT 65

Query: 255 RDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NS 310
           R  +        Y     DT G+  E    + +   +     + + +L+L + E     +
Sbjct: 66  RHRIMGVETEGKYQAIYVDTPGLHIEEKRAINRLMNRAASSSLSDVNLVLFVVEGTHWTA 125

Query: 311 KKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL--------------ISSFTGEGLE 352
             E+ F K    N   +    K D      E   H+              IS+  G+  +
Sbjct: 126 DDEMVFNKLQKANFPVVLCVNKVDQVKDRNEVMLHMLELSKRMPFVDIVPISAKQGKNTD 185

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            L   ++  L       P    + +   +  S+ VR
Sbjct: 186 VLKKHVREHLPKAVHHFPEEYVTDRSQRFMASEIVR 221


>gi|298372228|ref|ZP_06982218.1| GTP-binding protein [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275132|gb|EFI16683.1| GTP-binding protein [Bacteroidetes oral taxon 274 str. F0058]
          Length = 402

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 24/178 (13%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAG 276
           +   I ILG  N+GKSSL N +  +  A+V+D  GTT DV++  ++L G       DT G
Sbjct: 10  DRLHITILGRVNSGKSSLLNTITGQQSAVVSDTAGTTTDVVSKAMELRGIGACLFVDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFIF 324
             +   I+ K+  ++    +E AD+ +L+   +S   I               K I  +F
Sbjct: 70  FDDRS-ILGKQRTEQIHKALERADIAILMCGGDSLTGIPDLSEERTWAARLKEKKIPTVF 128

Query: 325 IGTKSD-------LYSTYTEEY---DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +  K+D       L     EE+      +S+ + + +E +   I   L   ++    +
Sbjct: 129 VVGKTDVRDNTALLVECIKEEFSQTPVCVSADSADSVEHIRLAILEALPEDYRSGSIT 186


>gi|84390105|ref|ZP_00991367.1| GTP-binding protein Era [Vibrio splendidus 12B01]
 gi|86146358|ref|ZP_01064682.1| GTP-binding protein Era [Vibrio sp. MED222]
 gi|218710568|ref|YP_002418189.1| GTP-binding protein Era [Vibrio splendidus LGP32]
 gi|84376759|gb|EAP93634.1| GTP-binding protein Era [Vibrio splendidus 12B01]
 gi|85835837|gb|EAQ53971.1| GTP-binding protein Era [Vibrio sp. MED222]
 gi|218323587|emb|CAV19827.1| GTP-binding protein era homolog [Vibrio splendidus LGP32]
          Length = 323

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 32  IAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRIMGVETEGDYQAIYVDTPGLHIEE 91

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L+  L +        E+   K    +   +    K D   
Sbjct: 92  KRAINRLMNRAANSSLSDVNLVFFLVDGTHWTDDDEMVLNKLRKTDFPVVLCINKVDNVQ 151

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T+   H++              S+  G+ ++ L   +++ L       P    + +  
Sbjct: 152 DRTDVMQHMMEVSKKMDFLDVVPISAKQGKNIDVLRKHVRNSLPKATHHFPEEYVTDRSQ 211

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 212 RFMASEIIR 220


>gi|319896431|ref|YP_004134624.1| gtp-binding protein era homolog [Haemophilus influenzae F3031]
 gi|317431933|emb|CBY80281.1| GTP-binding protein era homolog [Haemophilus influenzae F3031]
          Length = 302

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 13  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----------NIDFIFIG 326
              + +   +     + + DLI+ + +    N+  E+   K                 I 
Sbjct: 73  KRAINRLMNRAASSAIGDVDLIIFVVDGTHWNADDEMVLNKLRNAKAPVVLAINKVDNIK 132

Query: 327 TKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL    T+        +   IS+  G  ++EL   ++  L       P    + +  
Sbjct: 133 NKDDLLPFITDLSSKFNFAHIVPISAQRGNNVQELEKIVRQSLREGVHHFPEDYVTDRSQ 192

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 193 RFMASEIIR 201


>gi|52424422|ref|YP_087559.1| GTP-binding protein Era [Mannheimia succiniciproducens MBEL55E]
 gi|52306474|gb|AAU36974.1| Era protein [Mannheimia succiniciproducens MBEL55E]
          Length = 317

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            +I  H       +    G+ + I+G  N GKS+L N +  + ++I +    TTR  +  
Sbjct: 7   ENIVQHNETTAAEQETYCGF-VAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVG 65

Query: 261 DLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISF 316
                 Y     DT G+  E    + +   +     + + DLI+ + +    N+  E+  
Sbjct: 66  IHTEGPYQAIYVDTPGLHIEEKRAINRLMNRAASSAISDVDLIIFVVDGIHWNADDEMVL 125

Query: 317 PK----NIDFIFIGTKSD--------------LYSTYTEEYDHLISSFTGEGLEELINKI 358
            K        +    K D              L   +  +    IS+  G  +  L   +
Sbjct: 126 NKLRASKAPVVLAINKIDNIKNKDELLPFITELSGKFNFKEIIPISAQRGNNVHNLQKVV 185

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           +  L       P    + +   +  S+ +R
Sbjct: 186 RQSLRKGVHHFPEDYVTDRSQRFMASEIIR 215


>gi|302878421|ref|YP_003846985.1| GTP-binding protein Era [Gallionella capsiferriformans ES-2]
 gi|302581210|gb|ADL55221.1| GTP-binding protein Era [Gallionella capsiferriformans ES-2]
          Length = 303

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 73/194 (37%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+GY I I+G  N GKS+L N L  + ++I +    TTR  +      +       DT 
Sbjct: 13  YRSGY-IAIVGRPNVGKSTLLNHLIGQKISITSRKAQTTRHRINGIYTDDHSQFVFVDTP 71

Query: 276 GIRETDDIVEKEGIKRTFL-EVENADLILLLKEI------NSKKEISFPKNIDFIFIGTK 328
           G +         G+ R     + +  +++ + E       + +     P N   + +  K
Sbjct: 72  GFQLKHLNALNRGMNRVVTSSLRDVQVVMYVLEALRYDERDQEVLKLLPDNRPVLLVINK 131

Query: 329 SDLYSTYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            D  +   + +D                +S+  G+ +EEL + ++S L            
Sbjct: 132 IDEVADKGQLFDFAERIAKDFKFADIVPVSAKFGKKIEELRDTLRSFLPEGGLIYDADDV 191

Query: 375 SHKRHLYHLSQTVR 388
           + +   +  S+ +R
Sbjct: 192 TDRSERFLASEILR 205


>gi|238922661|ref|YP_002936174.1| GTP-binding protein EngA [Eubacterium rectale ATCC 33656]
 gi|238874333|gb|ACR74040.1| GTP-binding protein EngA [Eubacterium rectale ATCC 33656]
          Length = 454

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G +N+GKSSL NA+ K++V+IV D+ GTT D +   +++       I DTAG
Sbjct: 27  NRLHIGIYGKTNSGKSSLINAVTKQEVSIVADVAGTTTDPVYKPMEIHPLGPCVIIDTAG 86

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
             +  ++ E+  +++T L  E  D+ +++ +I   + I+  K         K +   +  
Sbjct: 87  FDDDSELGERR-VEKTHLAAEKTDIAVVVLDI--AEVIAAKKAGVPFKKAFKDEAEWSLL 143

Query: 337 EEYDHLISSFTGEGLEELI 355
               H    F    ++E++
Sbjct: 144 FAKKHTPVVFALNKIDEIL 162


>gi|229514086|ref|ZP_04403548.1| GTP-binding protein Era [Vibrio cholerae TMA 21]
 gi|229349267|gb|EEO14224.1| GTP-binding protein Era [Vibrio cholerae TMA 21]
          Length = 324

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 30/216 (13%)

Query: 202 DISSHISQGKLG-------EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI ++ +    G       E    G+ + I+G  N GKS+L N L  + ++I +  P TT
Sbjct: 7   DIDAYFASRSEGQTVTSTPEDQHCGF-VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTT 65

Query: 255 RDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NS 310
           R  +        Y     DT G+  E    + +   +     + + +L+L + E     +
Sbjct: 66  RHRIMGVETEGKYQAIYVDTPGLHIEEKRAINRLMNRAASSSLSDVNLVLFVVEGTHWTA 125

Query: 311 KKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL--------------ISSFTGEGLE 352
             E+ F K    N   +    K D      E   H+              IS+  G+  +
Sbjct: 126 DDEMVFNKLQKANFPVVLCVNKVDQVKDRNEVMLHMLELSKRMPFVDIVPISAKQGKNTD 185

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            L   ++  L       P    + +   +  S+ VR
Sbjct: 186 VLKKHVREHLPKAVHHFPEEYVTDRSQRFMASEIVR 221


>gi|209964795|ref|YP_002297710.1| GTP-binding protein Era [Rhodospirillum centenum SW]
 gi|209958261|gb|ACI98897.1| GTP-binding protein Era [Rhodospirillum centenum SW]
          Length = 340

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 80/207 (38%), Gaps = 23/207 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+ I ++G  NAGKS+L NAL    V+IV+    TTR  +          +   D
Sbjct: 43  EHPRCGF-IALVGAPNAGKSTLLNALVGAKVSIVSPKVQTTRSRVLGIGITGDSQLLFVD 101

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNIDFIF 324
           T GI +    +++  +   +    +ADLI++L + ++ +         E         I 
Sbjct: 102 TPGIFKPKRRLDRAMVAAAWQGATDADLIVMLYDASNDRLDEDTLGIIERLKEAGRTAIL 161

Query: 325 IGTKSDLYS-----TYTEEYD--------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              K DL           E D         +IS+ TG+GL +L   + + +       P 
Sbjct: 162 ALNKVDLIKREKLLKLAAELDSHGIFTRTFMISALTGDGLADLSAFLAAEVPEGPWLYPA 221

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEK 398
              S        ++  R      L+++
Sbjct: 222 DQLSDMPERLLAAEVTREKLFLQLHQE 248


>gi|291165839|gb|EFE27886.1| GTP-binding protein [Filifactor alocis ATCC 35896]
          Length = 393

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 17/160 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G +N GKSSL NA+A + V++V++  GTT D +   ++L       + DTAG
Sbjct: 8   NRIHISFFGKTNVGKSSLINAIAHQTVSLVSEQKGTTTDPVKKAIELHPIGPCLLIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK-EINSKKEISFP-----KNIDFIFIGTKSD 330
             +   I+  E I+ T   VE  D+ + L  + + ++E  +      KNI  +F+  KSD
Sbjct: 68  FDDNS-ILGTERIELTKQVVEQTDIAIFLFGDSSFEEERQWITYLHDKNIPTVFVLNKSD 126

Query: 331 LYSTYT---------EEYDHLISSFTGEGLEELINKIKSI 361
           +  +            +    +S+   E ++ L+ ++++I
Sbjct: 127 IVDSSNLALVIETEFGKKPICVSALHKENIDTLLKELQTI 166


>gi|260890871|ref|ZP_05902134.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254]
 gi|260859424|gb|EEX73924.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254]
          Length = 77

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425
                 I ++ RH   L +T   +  +    +    +D+I+ +L+ A  SL +ITG +  
Sbjct: 3   NSSEKLIITNIRHKTALEKTKDAIRNIFETIDMGLPMDLISVDLKEALDSLSEITGEISS 62

Query: 426 EQLLDIIFSKFCIGK 440
           E +LD +F  FC+GK
Sbjct: 63  EDILDHVFGNFCVGK 77


>gi|168063155|ref|XP_001783539.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664926|gb|EDQ51628.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 522

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 88/234 (37%), Gaps = 25/234 (10%)

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQ----WIDKLTHIRSFIEADLD 177
           K+ L +AE + D  S         +     G   ++  +      D    +R ++ +  D
Sbjct: 145 KVLLNKAEGMHDDASGSLMAAMGEAYSLGFGTPVAISAESGLGLADLYEDLRPWLSSLED 204

Query: 178 FSEEEDVQ-NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
            S   +V+ +    +     L L  +  + +S+    E+ R   ++ I G  N GKS+L 
Sbjct: 205 ISINSEVRLSLGDTDEFETKLNLNEENEALMSEA---ELKRVPMQLAIAGRPNVGKSTLL 261

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE- 295
           N+L  ++  +    PG TRD + ++ + E   + + DTAG  +   + E           
Sbjct: 262 NSLLMEERVLTGPEPGLTRDSIRVEFEYENQKIFLVDTAGWMQRKKLKEGPAALSAMNAR 321

Query: 296 --VENADLILLLKEINSKKEIS--------------FPKNIDFIFIGTKSDLYS 333
             V+ A ++ L+ +     E                  +    + +  K DL +
Sbjct: 322 RNVQRAHVVTLVLDAQEIAETKRSMRHTEAALAQWVVQEGRGLVVVVNKMDLLA 375



 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 84/214 (39%), Gaps = 40/214 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIP--GTTRDVLTIDLDLEGYLVKISDTAGIR 278
           K++++G  N GKS+LFN L K+  A+V + P    TRDV      L     ++ DTAG+ 
Sbjct: 29  KVLLVGRPNVGKSALFNRLTKRREALVYNTPDSHVTRDVREGVAKLGDMRFRVMDTAGL- 87

Query: 279 ETDDIVEKEGIKR-----TFLEVENADLILLLKEINS----------KKEISFPKNIDFI 323
           ETD   E   +       T   + N  + L L +  S          K       N+   
Sbjct: 88  ETDA--EAASVLYRTAGLTAAALRNCQIALFLVDGRSGVQPLDAEVGKWLRKLAPNVRVK 145

Query: 324 FIGTKSD---------LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKK 368
            +  K++         L +   E Y         IS+ +G GL +L   ++  LS+    
Sbjct: 146 VLLNKAEGMHDDASGSLMAAMGEAYSLGFGTPVAISAESGLGLADLYEDLRPWLSSL--- 202

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
               I  +      L  T  +    +LNE++  L
Sbjct: 203 --EDISINSEVRLSLGDTDEFETKLNLNEENEAL 234


>gi|85716283|ref|ZP_01047257.1| GTP-binding protein Era [Nitrobacter sp. Nb-311A]
 gi|85696955|gb|EAQ34839.1| GTP-binding protein Era [Nitrobacter sp. Nb-311A]
          Length = 303

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 27/224 (12%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            + G   R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +      +
Sbjct: 2   SQSGPTARCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVVENNAQI 60

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NID 321
            + DT GI      +++  +   +    +ADL+ +L +    I+ + +    K       
Sbjct: 61  ILVDTPGIFVPKRRLDRAMVSTAWSGAHDADLVCVLLDARAGIDDEADAILTKLAAVAHP 120

Query: 322 FIFIGTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
            I +  K DL                 + E   ++S+ +G+G+++L   +   +      
Sbjct: 121 KILVLNKIDLVPREKLLALAGAANERLSFEDTFMVSALSGDGVDDLRRSLAGRVPEGPFH 180

Query: 369 LPFSIPSHK--RHLYH---LSQTVRYLEMASLNEKDCGLDIIAE 407
            P    S    RHL       +  R+L      +     D   E
Sbjct: 181 YPEDQMSDAPLRHLAAEITREKIYRHLHQELPYQSTVETDTWTE 224


>gi|170077145|ref|YP_001733783.1| GTP-binding protein Era [Synechococcus sp. PCC 7002]
 gi|169884814|gb|ACA98527.1| GTP-binding protein Era [Synechococcus sp. PCC 7002]
          Length = 313

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 77/194 (39%), Gaps = 23/194 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L N L  + VAI + +  TTR+ L   L  +   +   DT G
Sbjct: 19  RSGF-VALIGRPNVGKSTLMNQLIGQKVAITSPVAQTTRNRLRGILSTDQAQIIFVDTPG 77

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE--INSKKEISFPKNI------DFIFIGTK 328
           I +    + K  +K     V   DL++ + +  +   K   F  +         I    K
Sbjct: 78  IHKPHHELGKILVKNARSTVGAVDLVVFIVDGAVPLGKGDQFIADFLVKTEAKVILGVNK 137

Query: 329 SDLYSTYTEEY----------DHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            D       E           +H      S+  G+ L EL +K+   L       P  + 
Sbjct: 138 IDQRPDKRPEILASYQALATQNHWQLQEFSALAGDRLPELQDKLIQALDPGPYYYPPDLI 197

Query: 375 SHKRHLYHLSQTVR 388
           + +   + +++ +R
Sbjct: 198 TDQPERFIMAELIR 211


>gi|326390100|ref|ZP_08211661.1| GTP-binding proten HflX [Thermoanaerobacter ethanolicus JW 200]
 gi|325993748|gb|EGD52179.1| GTP-binding proten HflX [Thermoanaerobacter ethanolicus JW 200]
          Length = 413

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 87/236 (36%), Gaps = 16/236 (6%)

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
                  +L+ +   I        + +      K  +  I     +I  H S  +     
Sbjct: 136 RLAGLGGQLSRLGGGIGTRGPGETKLETDRRHIKNRIKAIEKKLEEIERHRSLQRERRKK 195

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTA 275
                I I+G++NAGKS+L NAL   +V  V +    T D     L L  G  V + DT 
Sbjct: 196 NRIPVIAIVGYTNAGKSTLLNALTNAEV-YVENKLFATLDPTARRLVLPSGREVILIDTV 254

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFI 323
           G          E  K T  EV+ ADL+L + ++ S       K            N   I
Sbjct: 255 GFIRKLPHDLVEAFKSTLEEVKYADLLLHVIDVTSPDMEEKIKVVEKVLSDLGAINTPKI 314

Query: 324 FIGTKSDLYSTYTE--EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            +  K DL     +  E +  IS+    G ++L+  I+  +    + + F +P  K
Sbjct: 315 NVFNKIDLLEVVPKGNEREVYISAKNKIGFDKLLQAIEREIFKDVEVVNFLLPYDK 370


>gi|220930466|ref|YP_002507375.1| small GTP-binding protein [Clostridium cellulolyticum H10]
 gi|220000794|gb|ACL77395.1| small GTP-binding protein [Clostridium cellulolyticum H10]
          Length = 396

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 24/175 (13%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I + G  N+GKSSL N +  +D+A+V++I GTT D +   ++L     V   DTAG
Sbjct: 10  NRLHIALFGRRNSGKSSLINTITGQDIALVSEIAGTTTDPVYKAMELHPIGPVMFIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI---------DFIFIGT 327
             +   + E   I++T   ++  D+ +++    S+ E+S  K             I I  
Sbjct: 70  FDDVGTLGELR-IEKTRKVIDKTDIAIVIF---SETELSMEKEWMNELKKRKIPVIPIIN 125

Query: 328 KSDLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           K+D+ +   +              +IS+    GL+++  ++   +   F+    +
Sbjct: 126 KADILNNTDDIKKQVEETLGLMPIIISAKEKTGLDKVREELIRAVPEDFEVSSIT 180


>gi|295132648|ref|YP_003583324.1| GTP-binding protein [Zunongwangia profunda SM-A87]
 gi|294980663|gb|ADF51128.1| putative GTP-binding protein [Zunongwangia profunda SM-A87]
          Length = 294

 Score = 84.9 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + V +SDT GI +  
Sbjct: 8   VNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQVILSDTPGIIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPK----NIDFIFIGTKSDL--- 331
             +++  +       E+AD+++ + EI  ++   E  F K     I  + +  K D    
Sbjct: 68  YELQESMMDFVKSAFEDADILVYMVEIGERELKDEAFFRKIVHAEIPVLLLLNKIDKSNQ 127

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                              + IS+  G  + E+ ++I  +L       P    + K   +
Sbjct: 128 EQLEEQVGLWKEKVPNAEIYPISALEGFNVSEVFSRILELLPESPAFYPKDSLTDKPERF 187

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 188 FVNEIIR 194


>gi|83311358|ref|YP_421622.1| GTP-binding protein Era [Magnetospirillum magneticum AMB-1]
 gi|82946199|dbj|BAE51063.1| GTPase [Magnetospirillum magneticum AMB-1]
          Length = 303

 Score = 84.9 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 22/200 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L NAL    V+IV+    TTR  +     +    V + DT G
Sbjct: 10  RCGF-VAVVGAPNAGKSTLVNALVGTKVSIVSPKVQTTRFRVMGIAMVGEAQVVLVDTPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFI--FIGTK 328
           I      +E+  +   +    +AD I LL +        S+  +   K        +  K
Sbjct: 69  IFAPKKRLERAMVAAAWGGTNDADHICLLIDAAKGYDDESRAIVDKLKETKRQAILVLNK 128

Query: 329 SDLYST-----YTEEYD--------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL         T + D         +IS+  G+G+ +L+  +  +++      P    S
Sbjct: 129 VDLVKRDKLLGLTAQLDAEGIFTDVFMISALKGDGIADLLAHLGKLVAPGPWMFPEDQVS 188

Query: 376 HKRHLYHLSQTVRYLEMASL 395
                   ++  R     +L
Sbjct: 189 DLPQRLLAAEITREKAFLAL 208


>gi|75676108|ref|YP_318529.1| GTP-binding protein Era [Nitrobacter winogradskyi Nb-255]
 gi|74420978|gb|ABA05177.1| GTP-binding protein Era [Nitrobacter winogradskyi Nb-255]
          Length = 303

 Score = 84.9 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 84/224 (37%), Gaps = 27/224 (12%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            + G   R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +      +
Sbjct: 2   SETGPTSRCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIENNAQI 60

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NID 321
            + DT GI      +++  +   +    +ADL+ +L +    I+ + +    K       
Sbjct: 61  ILVDTPGIFVPKRRLDRAMVSTAWSGAHDADLVCVLLDARAGIDEEADAILTKLAGVAHP 120

Query: 322 FIFIGTKSDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKK 368
            I +  K DL                   E   ++S+ +G+G+++L   +   +      
Sbjct: 121 KILVLNKIDLVRREKLLALAGSANERLGFEETFMVSALSGDGVDDLRLALAGRVPEGPFH 180

Query: 369 LPFSIPSHK--RHLYH---LSQTVRYLEMASLNEKDCGLDIIAE 407
            P    S    RHL       +  R+L      +     D   E
Sbjct: 181 YPEDQMSDAPLRHLAAEITREKIYRHLHQELPYQSTVETDTWTE 224


>gi|224535782|ref|ZP_03676321.1| hypothetical protein BACCELL_00646 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522602|gb|EEF91707.1| hypothetical protein BACCELL_00646 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 293

 Score = 84.9 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 21/151 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I T    TTR  +    + +   +  SDT G+ +  
Sbjct: 7   VNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGVLKPQ 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++       N   E      I  + +  K DL   
Sbjct: 67  YKLQESMLNFSTSALTDADVLLYVTDVVETPDKHNEFIEKVARMEIPVLLLINKIDLS-- 124

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                         E L EL+   K++L N 
Sbjct: 125 ------------NQEKLVELVEAWKALLPNA 143


>gi|222148082|ref|YP_002549039.1| GTP-binding protein Era [Agrobacterium vitis S4]
 gi|221735070|gb|ACM36033.1| GTP-binding protein Era [Agrobacterium vitis S4]
          Length = 327

 Score = 84.9 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 84/212 (39%), Gaps = 22/212 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
               +     +G+ + ++G +NAGKS+L N      V+IV+    TTR V+         
Sbjct: 24  EDAAVVRPTHSGF-VALIGPTNAGKSTLVNRFVGAKVSIVSHKVQTTRAVMRGIAIHNNA 82

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN-- 319
            +   DT GI +    +++  +   +   ++AD+ILLL +       + +  +   K+  
Sbjct: 83  QIVFMDTPGIFKPRRKLDRAMVTSAWGGAKDADVILLLIDSERGLRGDGEAILEALKDVH 142

Query: 320 IDFIFIGTKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKF 366
              I +  K D         L ST  E    E   +IS+  G G +++++ +   L    
Sbjct: 143 QPKILVLNKIDQVRHEDLLKLASTANEAVKFERTFMISATNGSGCQDVMDYLADYLPEGP 202

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
              P    S        ++  R      L+++
Sbjct: 203 WYYPEDQISDLPMRQLAAEITREKLFLRLHQE 234


>gi|323137543|ref|ZP_08072620.1| GTP-binding protein Era [Methylocystis sp. ATCC 49242]
 gi|322397169|gb|EFX99693.1| GTP-binding protein Era [Methylocystis sp. ATCC 49242]
          Length = 307

 Score = 84.9 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 74/202 (36%), Gaps = 22/202 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +   G+  R G+   ++G  NAGKS+L N L    V+IV+    TTR ++         
Sbjct: 3   EENAAGQETRCGF-AALVGAPNAGKSTLLNQLVGAKVSIVSRKAQTTRALVRGIAIDGPA 61

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------N 319
            + + DT GI +    +++  +        +AD++ LL +     +              
Sbjct: 62  QIILVDTPGIFKPKRRLDRAMVASALSGATDADVVALLVDARRGLDEEVESILTQLAEVK 121

Query: 320 IDFIFIGTKSDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKF 366
              I +  K D+ +                 E   ++S+ TG+G+ +L + +   +    
Sbjct: 122 APKILVLNKIDVIAREKLLALAAKMNERGKFEETFMVSALTGDGVGDLRHALGKRMKPGP 181

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
              P    S        ++  R
Sbjct: 182 WLYPEDQLSDAPLRLLAAEITR 203


>gi|319779261|ref|YP_004130174.1| GTP-binding protein Era [Taylorella equigenitalis MCE9]
 gi|317109285|gb|ADU92031.1| GTP-binding protein Era [Taylorella equigenitalis MCE9]
          Length = 296

 Score = 84.9 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 72/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L NAL    ++IV+    TTR  +   L  +       DT G +   
Sbjct: 11  IAVVGRPNVGKSTLMNALIDSKISIVSRKAQTTRHRIHGVLTKDSVQYIFVDTPGFQTRH 70

Query: 282 DIVEKEGIKRTFLE-VENADLILLLK------EINSKKEISFPKNIDFIFIGTKSDLYS- 333
                  + R     + + D+IL +       + +++     PKN   I + +K DL   
Sbjct: 71  GGTMNNMMNRVVTSTLNDVDVILHVVEAGKWNDGDAQIIPLLPKNKPAILVLSKVDLLKD 130

Query: 334 -------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                         +T E    +SS     L+ L+++I   L            + +   
Sbjct: 131 KNSLFAFTKDILQKHTYEAVVPVSSEKTIQLDTLLDEISIRLPESEHLFDEEAITDRSIK 190

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 191 FIVSEIIR 198


>gi|209517221|ref|ZP_03266066.1| GTP-binding protein Era [Burkholderia sp. H160]
 gi|209502357|gb|EEA02368.1| GTP-binding protein Era [Burkholderia sp. H160]
          Length = 287

 Score = 84.9 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 71/191 (37%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + V+I +    TTR  +T    LE       DT G +   
Sbjct: 2   VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGINTLEDAQYIFVDTPGFQTKH 61

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P  +  + I  K D  S 
Sbjct: 62  SGALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPAKVPTLLIANKLDRVSD 121

Query: 335 YTEEYDHLISSFTGEGLEELI-------NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
               +  +    T     E++       + IK +++     LP   P +        ++ 
Sbjct: 122 KDSLFPFMQQMSTLREFNEIVPLSAKNTDDIKRLMATIKPFLPEGEPIYGED-DLTDRSE 180

Query: 388 RYLEMASLNEK 398
           R+L    L EK
Sbjct: 181 RFLAAEILREK 191


>gi|224534465|ref|ZP_03675041.1| GTP-binding protein Era [Borrelia spielmanii A14S]
 gi|224514142|gb|EEF84460.1| GTP-binding protein Era [Borrelia spielmanii A14S]
          Length = 290

 Score = 84.9 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+   ILG  + GKS+L N++    ++I++ IP TTR+ +          +   DT 
Sbjct: 1   MKSGF-AAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDGRGQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGT 327
           G   +        +      +   +LIL + +I  K         EI     + F+ +  
Sbjct: 60  GFHLSKKKFNIAMMNNIRSSIGEVELILYMIDIQDKPGEEENKMLEIIKNSKVKFLVLIN 119

Query: 328 KSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL +T  +E                 IS+      EEL NKI    S      P    
Sbjct: 120 KVDLKNTKIKEITQFLKAKEIEDSNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYY 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + ++  + +S+ +R   + +L E+
Sbjct: 180 TDQKINFRISEIIREKAIENLKEE 203


>gi|221061357|ref|XP_002262248.1| gtp binding protein [Plasmodium knowlesi strain H]
 gi|193811398|emb|CAQ42126.1| gtp binding protein, putative [Plasmodium knowlesi strain H]
          Length = 831

 Score = 84.9 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 20/138 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279
           I  +G  N GKSS+ N +   +  IV+ I GTT D + + + ++    + ++ DTAGI++
Sbjct: 530 ISFIGKPNTGKSSILNKILNCNRFIVSPIAGTTVDSIDVLVKIKDSDRIYRLIDTAGIQK 589

Query: 280 TDD--------IVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDF 322
                        E     RT   ++ +D+ +L+          +IN  ++I   +N   
Sbjct: 590 RKKNIPFSEKTKYEYLLFNRTEKAIKRSDVCILVIDSFNGISSHDINIARKI-VQENKSC 648

Query: 323 IFIGTKSDLYSTYTEEYD 340
           I    K DL     + ++
Sbjct: 649 IICCNKWDLIYNKNDIFN 666



 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 3/96 (3%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK--KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           +IIRN   I I+G  N GKS++FN L +  ++ +IV     +TRD +  ++D +GY  ++
Sbjct: 254 KIIRNLPLISIIGRPNVGKSTIFNRLTRKFQEGSIVL-GESSTRDKIYGEVDWDGYKFEV 312

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            DT G+   D+   K+   +  L ++ + ++L + +
Sbjct: 313 VDTGGLIFEDEKFCKQIRDQIMLALKESSVVLFVVD 348


>gi|15595005|ref|NP_212794.1| GTP-binding protein Era [Borrelia burgdorferi B31]
 gi|195941480|ref|ZP_03086862.1| GTP-binding protein Era [Borrelia burgdorferi 80a]
 gi|218249442|ref|YP_002375160.1| GTP-binding protein Era [Borrelia burgdorferi ZS7]
 gi|225549958|ref|ZP_03770919.1| GTP-binding protein Era [Borrelia burgdorferi 118a]
 gi|226320503|ref|ZP_03796069.1| GTP-binding protein Era [Borrelia burgdorferi 29805]
 gi|226321358|ref|ZP_03796885.1| GTP-binding protein Era [Borrelia burgdorferi Bol26]
 gi|3334175|sp|O51604|ERA_BORBU RecName: Full=GTPase Era
 gi|226741167|sp|B7J2L5|ERA_BORBZ RecName: Full=GTPase Era
 gi|2688587|gb|AAC67005.1| GTP-binding protein (era) [Borrelia burgdorferi B31]
 gi|218164630|gb|ACK74691.1| GTP-binding protein Era [Borrelia burgdorferi ZS7]
 gi|225369417|gb|EEG98869.1| GTP-binding protein Era [Borrelia burgdorferi 118a]
 gi|226233154|gb|EEH31906.1| GTP-binding protein Era [Borrelia burgdorferi Bol26]
 gi|226234145|gb|EEH32860.1| GTP-binding protein Era [Borrelia burgdorferi 29805]
          Length = 290

 Score = 84.9 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+   ILG  + GKS+L N++    ++I++ IP TTR+ +      +   +   DT 
Sbjct: 1   MKSGF-AAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNNIKGIFTDDRGQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGT 327
           G   +        +K     +   +LIL + +I  K         EI     I F+ I  
Sbjct: 60  GFHLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILN 119

Query: 328 KSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL +T  +E                 IS+      EEL NKI    S      P    
Sbjct: 120 KIDLKNTKIKEITQFLKEKGIEDSNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYY 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +   + +S+ +R   + +L E+
Sbjct: 180 TDQEINFRISEIIREKAIENLKEE 203


>gi|153214498|ref|ZP_01949407.1| GTP-binding protein Era [Vibrio cholerae 1587]
 gi|153803091|ref|ZP_01957677.1| GTP-binding protein Era [Vibrio cholerae MZO-3]
 gi|153826892|ref|ZP_01979559.1| GTP-binding protein Era [Vibrio cholerae MZO-2]
 gi|153830876|ref|ZP_01983543.1| GTP-binding protein Era [Vibrio cholerae 623-39]
 gi|229524447|ref|ZP_04413852.1| GTP-binding protein Era [Vibrio cholerae bv. albensis VL426]
 gi|229527068|ref|ZP_04416463.1| GTP-binding protein Era [Vibrio cholerae 12129(1)]
 gi|254226245|ref|ZP_04919838.1| GTP-binding protein Era [Vibrio cholerae V51]
 gi|254291660|ref|ZP_04962448.1| GTP-binding protein Era [Vibrio cholerae AM-19226]
 gi|262190710|ref|ZP_06048941.1| GTP-binding protein Era [Vibrio cholerae CT 5369-93]
 gi|297581084|ref|ZP_06943009.1| GTP-binding protein Era [Vibrio cholerae RC385]
 gi|124115300|gb|EAY34120.1| GTP-binding protein Era [Vibrio cholerae 1587]
 gi|124121373|gb|EAY40116.1| GTP-binding protein Era [Vibrio cholerae MZO-3]
 gi|125621218|gb|EAZ49559.1| GTP-binding protein Era [Vibrio cholerae V51]
 gi|148873645|gb|EDL71780.1| GTP-binding protein Era [Vibrio cholerae 623-39]
 gi|149739255|gb|EDM53517.1| GTP-binding protein Era [Vibrio cholerae MZO-2]
 gi|150422432|gb|EDN14391.1| GTP-binding protein Era [Vibrio cholerae AM-19226]
 gi|229335465|gb|EEO00947.1| GTP-binding protein Era [Vibrio cholerae 12129(1)]
 gi|229338028|gb|EEO03045.1| GTP-binding protein Era [Vibrio cholerae bv. albensis VL426]
 gi|262033422|gb|EEY51929.1| GTP-binding protein Era [Vibrio cholerae CT 5369-93]
 gi|297534910|gb|EFH73746.1| GTP-binding protein Era [Vibrio cholerae RC385]
          Length = 324

 Score = 84.9 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 30/216 (13%)

Query: 202 DISSHISQGKLG-------EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI ++ +    G       E    G+ + I+G  N GKS+L N L  + ++I +  P TT
Sbjct: 7   DIDAYFASRSEGQTATSTPEDQHCGF-VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTT 65

Query: 255 RDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NS 310
           R  +        Y     DT G+  E    + +   +     + + +L+L + E     +
Sbjct: 66  RHRIMGVETEGKYQAIYVDTPGLHIEEKRAINRLMNRAASSSLSDVNLVLFVVEGTHWTA 125

Query: 311 KKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL--------------ISSFTGEGLE 352
             E+ F K    N   +    K D      E   H+              IS+  G+  +
Sbjct: 126 DDEMVFNKLQKANFPVVLCVNKVDQVKDRNEVMLHMLELSKRMPFVDIVPISAKQGKNTD 185

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            L   ++  L       P    + +   +  S+ VR
Sbjct: 186 VLKKHVREHLPKAVHHFPEEYVTDRSQRFMASEIVR 221


>gi|145639698|ref|ZP_01795301.1| GTP-binding protein Era [Haemophilus influenzae PittII]
 gi|145271255|gb|EDK11169.1| GTP-binding protein Era [Haemophilus influenzae PittII]
 gi|309750668|gb|ADO80652.1| GTP-binding protein [Haemophilus influenzae R2866]
          Length = 302

 Score = 84.9 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 13  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----------NIDFIFIG 326
              + +   +     + + DLI+ + +    N+  E++  K                 I 
Sbjct: 73  KRAINRLMNRAASSAIGDVDLIIFVVDGTHWNADDEMALNKLRNAKAPVVLAINKVDNIK 132

Query: 327 TKSDLY-------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL        S +   +   IS+  G  + EL   ++  L       P    + +  
Sbjct: 133 NKDDLLPFITGLSSKFNFAHIVPISAQRGNNVHELEKIVRQSLREGVHHFPEDYVTDRSQ 192

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 193 RFMASEIIR 201


>gi|298291622|ref|YP_003693561.1| GTP-binding protein Era [Starkeya novella DSM 506]
 gi|296928133|gb|ADH88942.1| GTP-binding protein Era [Starkeya novella DSM 506]
          Length = 304

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L NAL    V+IV+    TTR ++          + + DT G
Sbjct: 9   RCGF-VALIGAPNAGKSTLTNALVGTKVSIVSHKVQTTRSLVRGIALEGTTQIILVDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           I      +EK  ++  +    +AD ++LL +  +                      +  K
Sbjct: 68  IFAPKRRLEKAMVRSAWSGAGDADAVVLLVDARAGMTEDVEAIIKGLADVKRPRAILLNK 127

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL                 + +   ++S+  G+GL+EL   +   L       P    S
Sbjct: 128 IDLVKRDSLLELAAKVAELISFDRLFMVSAQNGDGLKELREWLAQTLPLGPWLYPEDQIS 187

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+E+
Sbjct: 188 DAPMRSLAAEITREKLFHRLHEE 210


>gi|312115947|ref|YP_004013543.1| GTP-binding protein Era [Rhodomicrobium vannielii ATCC 17100]
 gi|311221076|gb|ADP72444.1| GTP-binding protein Era [Rhodomicrobium vannielii ATCC 17100]
          Length = 364

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 78/212 (36%), Gaps = 22/212 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +   G   R G+   ++G  NAGKS+L NAL    V+IVT    TTR  +         
Sbjct: 61  ERPSAGAGSRCGF-AAVIGAPNAGKSTLVNALVGAKVSIVTHKAQTTRTRVRGIALDGEA 119

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------N 319
            + + DT GI      +++  ++  + E   AD+ +L+ +     + +            
Sbjct: 120 QIVLVDTPGIFAPKRRLDRAMVETAWTEAREADVAVLVVDAARGFDDTVDPIVNEAANLK 179

Query: 320 IDFIFIGTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
           I  I    K D                    E   +IS+ +G+G+E+L   + + +    
Sbjct: 180 IPLILALNKVDKIHKEKLLALAGEASERLKLESLFMISALSGDGVEDLRGFLATRMPYGP 239

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
              P    +        ++  R      L+E+
Sbjct: 240 WLFPEDQIADAPLRQWAAEITREKMFIRLHEE 271


>gi|323526858|ref|YP_004229011.1| GTP-binding protein Era [Burkholderia sp. CCGE1001]
 gi|323383860|gb|ADX55951.1| GTP-binding protein Era [Burkholderia sp. CCGE1001]
          Length = 287

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 70/191 (36%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + V+I +    TTR  +T    LE       DT G +   
Sbjct: 2   VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLEDAQYIFVDTPGFQTKH 61

Query: 282 DIVEKEGIKRTFLEVENA-DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R       A D IL + E       + K     P ++  + I  K D  S 
Sbjct: 62  SSALNRSLNRAVTSTLTAVDAILFVIEAGRFGADDQKVLDLIPPSVPTLLIANKLDRVSD 121

Query: 335 YTEEYDHLISSFTGEGLEELI-------NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
               +  +          E++       + IK +++     LP   P +        ++ 
Sbjct: 122 KDSLFPFMQQMSALRPFNEIVPLSAKNPDDIKRLMATVKPYLPEGAPIYGED-DLTDRSE 180

Query: 388 RYLEMASLNEK 398
           R+L    L EK
Sbjct: 181 RFLAAEILREK 191


>gi|52840266|ref|YP_094065.1| GTP binding protein HflX [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52627377|gb|AAU26118.1| GTP binding protein HflX [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 419

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 102/288 (35%), Gaps = 23/288 (7%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +E + 
Sbjct: 119 RARTFEGKLQVELAQLQHLSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRERIR 177

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     Q +      +   + ++G++NAGKS+LFN L  +    V D    T
Sbjct: 178 YINKRLEKVRCSRDQNRQARRKASMPTVSLVGYTNAGKSTLFNVLTGEH-TYVADQLFAT 236

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     L+L G     ++DT G          E  + T  E + ADL+L + +I+    
Sbjct: 237 LDPTMRKLELPGSSAAILADTVGFIRDLPHHLVEAFRATLEETQQADLLLHVIDISDPNW 296

Query: 313 -----------EISFPKNIDFIFIGTKSDLYSTYTEEYDH-------LISSFTGEGLEEL 354
                      +     NI  I +  K DL   +  + D+        +S+ TG GL+ L
Sbjct: 297 RETVFEVQKVLDELKVNNIPVIQVFNKIDLQEGWQPKIDYTEDSCKVWLSATTGAGLDLL 356

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
              I + L          I   +  L      +  +   S++E    L
Sbjct: 357 KEAIATQLHGMILIEDIVIKPDQAKLRAQLYQLGAVLKESVDENGDWL 404


>gi|326773664|ref|ZP_08232947.1| GTP-binding protein [Actinomyces viscosus C505]
 gi|326636894|gb|EGE37797.1| GTP-binding protein [Actinomyces viscosus C505]
          Length = 565

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 93/251 (37%), Gaps = 29/251 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+ +I +     + K G   R     + I G++NAGKSSL N L + 
Sbjct: 304 ELDRRRIRQRMARLRREIQAMAPSRETKRGSRRRGAIPSVAIAGYTNAGKSSLMNRLTEA 363

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            + +   +  T    +      EG    ++DT G          E  + T  EV  ADL+
Sbjct: 364 GIMVEDALFATLDPTVRRAETSEGRTYTLTDTVGFVRNLPHELIEAFRSTLEEVAGADLV 423

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + +                  EI    ++  + +  K DL    T             
Sbjct: 424 LHVVDAAHPDPLSQVAAVRTVLSEIPGALDVSELIVLNKVDLADAVTLAALRTRLPSAVA 483

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS------HKRHLYHLSQTVRYLEMASLN 396
           +S+ TGEG+EEL  +I+ +L +    +   +P        + H      TV Y+E  +  
Sbjct: 484 VSARTGEGIEELRARIEQMLPHPQVSIDVVVPYSRGDLVSRVHAEGEIDTVDYVETGTRV 543

Query: 397 EKDCGLDIIAE 407
               G  + AE
Sbjct: 544 VARVGAALAAE 554


>gi|90407380|ref|ZP_01215565.1| GTP-binding protein Era [Psychromonas sp. CNPT3]
 gi|90311531|gb|EAS39631.1| GTP-binding protein Era [Psychromonas sp. CNPT3]
          Length = 300

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L NAL  + V+I +    TTR  +        Y     DT G+  E 
Sbjct: 8   VAIVGRPNVGKSTLINALLGQKVSITSRKAQTTRHRILGIDTQGEYQTIFVDTPGLHVEE 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     + + ++++ + E    N   E+   K        +    K D   
Sbjct: 68  KRAINRLMNRAASSSINDVEMVIFVVEGTHWNEDDEMVLSKFKYLTCPVVLAINKIDNVE 127

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L   Y  ++   +S+  G+ +E++    +  L       P    + +  
Sbjct: 128 DKELLLPHLQELGERYNFKHILPMSAKKGDNIEKIRQWAQEALPESEFYFPEDYITDRSS 187

Query: 380 LYHLSQTVR 388
            +  S+ VR
Sbjct: 188 RFMASEIVR 196


>gi|115525027|ref|YP_781938.1| GTP-binding protein Era [Rhodopseudomonas palustris BisA53]
 gi|115518974|gb|ABJ06958.1| GTP-binding protein Era [Rhodopseudomonas palustris BisA53]
          Length = 313

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 80/198 (40%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NAL    V IV+    TTR ++   +      + + DT GI    
Sbjct: 23  VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIDNKAQIILVDTPGIFMPK 82

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333
             +++  +   +    +ADL+ +L +    I+ + +    K        I +  K D+ S
Sbjct: 83  RRLDRAMVNTAWSGAHDADLVCVLLDARAGIDEEADALLEKVAKVGHPKILVINKVDIVS 142

Query: 334 T-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                          T +   ++S+ +G+G+ +L + + + +       P    S     
Sbjct: 143 KEKLLKLAQDANARLTFDETFMVSALSGDGVADLRHALAARVPPGPYHYPEDQMSDAPMR 202

Query: 381 YHLSQTVRYLEMASLNEK 398
           +  ++  R      L+++
Sbjct: 203 HLAAEITREKIFRQLHQE 220


>gi|330446942|ref|ZP_08310593.1| GTP-binding protein Era [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491133|dbj|GAA05090.1| GTP-binding protein Era [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 301

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  +      +GY     DT G+  E 
Sbjct: 10  IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVYVDTPGLHIEE 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L+L L +        E+   K     +  + +  K D   
Sbjct: 70  KRTINRLMNRAASSSLTDVELVLFLVDGTMWTDDDEMVLNKLAKSQLPTVLLVNKVDNVK 129

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E + H               +S+  G  ++ +   ++  L       P    + +  
Sbjct: 130 DKHELFPHLQELASKMEFVDVVPVSAKHGTNIDAVEKIVREHLPECEYYFPEEYVTDRSQ 189

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 190 RFMASEIIR 198


>gi|227500637|ref|ZP_03930686.1| GTP-binding protein, possible GTPase [Anaerococcus tetradius ATCC
           35098]
 gi|227217224|gb|EEI82568.1| GTP-binding protein, possible GTPase [Anaerococcus tetradius ATCC
           35098]
          Length = 382

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G +N+GKSSL N +   D AIV++I GTT D +   +++  +  V   DTAG
Sbjct: 7   ERLHIGIFGQTNSGKSSLLNYMTGTDTAIVSNIAGTTTDPIRKAMEITDFGPVLFIDTAG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI---SFPKNIDFIFIGTKSDLY- 332
           + +   + +   I ++   ++  D+ +    ++   +I      K    I++ +K DL  
Sbjct: 67  VNDKTSLGQAR-IAKSRQVIDKCDVFIYCLSLDDDMQILNELKKKEKPIIYVASKQDLPV 125

Query: 333 -STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            S  +++Y  L         ++   KI + + +  KK   +I  +
Sbjct: 126 GSEISDKYKDLAPLKIDIRNKDDRLKIFARIKSLEKKDEPTITKN 170


>gi|256545610|ref|ZP_05472968.1| GTP-binding protein Era [Anaerococcus vaginalis ATCC 51170]
 gi|256398687|gb|EEU12306.1| GTP-binding protein Era [Anaerococcus vaginalis ATCC 51170]
          Length = 293

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 90/201 (44%), Gaps = 22/201 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + ++G +N GKS+L   +  + ++I+++ P TTRD + I  + E   +   DT 
Sbjct: 1   MKSGF-VSVVGRANVGKSTLMEKILGEKISIISNKPQTTRDEIKIIYNDENSQIIFLDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
           GI+   + +++  ++ +   ++++D++  + + +           EI    N   I +  
Sbjct: 60  GIQTPRNKLQEHLLEVSEDSLKDSDIVTFIVDNSLTIGRLDKMILEILEKVNAPKILLIN 119

Query: 328 KSDLYSTYTEE-------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL      E             Y   IS+   E + + I  +K IL       P  + 
Sbjct: 120 KCDLLEEGEIEQIKRTYIGLNTFDYIIPISALNDENIGKYIETVKEILPEGPLYYPSDMI 179

Query: 375 SHKRHLYHLSQTVRYLEMASL 395
           + K   + +S+ +R   + +L
Sbjct: 180 TDKNERFIVSEIIREKALKNL 200


>gi|145630696|ref|ZP_01786475.1| GTP-binding protein Era [Haemophilus influenzae R3021]
 gi|144983822|gb|EDJ91272.1| GTP-binding protein Era [Haemophilus influenzae R3021]
          Length = 302

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 13  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----------NIDFIFIG 326
              + +   +     + + DLI+ + +    N+  E+   K                 I 
Sbjct: 73  KRAINRLMNRVASSAIGDVDLIIFVVDGTHWNADDEMVLNKLRNAKAPVVLAINKVDNIK 132

Query: 327 TKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL    TE        +   IS+  G  + EL   ++  L       P    + +  
Sbjct: 133 NKDDLLPFITELSSKFNFAHIVPISAQRGNNVHELEKIVRQSLREGVHHFPEDYVTDRSQ 192

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 193 RFMASEIIR 201


>gi|307608760|emb|CBW98143.1| hypothetical protein LPW_00091 [Legionella pneumophila 130b]
          Length = 414

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 102/288 (35%), Gaps = 23/288 (7%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +E + 
Sbjct: 114 RARTFEGKLQVELAQLQHLSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRERIR 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     Q +      +   + ++G++NAGKS+LFN L  +    V D    T
Sbjct: 173 YINKRLEKVRCSRDQNRQARRKASMPTVSLVGYTNAGKSTLFNVLTGEH-TYVADQLFAT 231

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     L+L G     ++DT G          E  + T  E + ADL+L + +I+    
Sbjct: 232 LDPTMRKLELPGSSAAILADTVGFIRDLPHHLVEAFRATLEETQQADLLLHVIDISDPNW 291

Query: 313 -----------EISFPKNIDFIFIGTKSDLYSTYTEEYDH-------LISSFTGEGLEEL 354
                      +     NI  I +  K DL   +  + D+        +S+ TG GL+ L
Sbjct: 292 RETVFEVQKVLDDLKVNNIPVIQVFNKIDLQEGWQPKIDYTEDSCKVWLSATTGAGLDLL 351

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
              I + L          I   +  L      +  +   S++E    L
Sbjct: 352 KEAIATQLHGMILIEDIVIKPDQAKLRAQLYQLGAVLKESVDENGDWL 399


>gi|217077570|ref|YP_002335288.1| small GTP-binding protein domain protein [Thermosipho africanus
           TCF52B]
 gi|217037425|gb|ACJ75947.1| small GTP-binding protein domain protein [Thermosipho africanus
           TCF52B]
          Length = 399

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 15/190 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  N GKSS  NAL  +DV+IV+++ GTT D +   ++L     V + DT G+ + 
Sbjct: 11  IAITGRRNVGKSSFMNALIGQDVSIVSNVAGTTTDPVFKSMELSPIGPVTLIDTPGLDDI 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK------EISFPKNIDFIFIGTKSDLYST 334
            ++ +K  I++    +  AD  +L+ +   K+      EI     I +I +  K D  + 
Sbjct: 71  GELGQKR-IEKAKKTLYRADCGILIVDSQPKEYEHQIVEIFKQLEIPYIIVINKID--TI 127

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
            ++E +     F    ++  ++ +K I       +  S+      + +LS  +   ++  
Sbjct: 128 NSDEVEETYKKFNVPIVK--VSALKKIGFENIGNVIDSVIPKDDEIPYLSDLIDGGDLVV 185

Query: 395 LNEKDCGLDI 404
           L      +D+
Sbjct: 186 LV---VPIDL 192


>gi|212690522|ref|ZP_03298650.1| hypothetical protein BACDOR_00004 [Bacteroides dorei DSM 17855]
 gi|212666871|gb|EEB27443.1| hypothetical protein BACDOR_00004 [Bacteroides dorei DSM 17855]
          Length = 293

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 74/163 (45%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   L+ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNLLVGERISIATFKSQTTRHRIMGILNTDDMQIVFSDTPGVVKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFI--FIGTKSDL--- 331
             +++  +  +   + +AD++L + ++  K +     I   +N+      +  K DL   
Sbjct: 67  YKLQESMLNFSESALVDADILLYVTDVVEKTDKNVDFIEKVRNVKVPVLLLINKIDLTNQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                     +    +     IS+ +   ++ ++ +I+ +L +
Sbjct: 127 EDLVKLVEAWHEQLPQAEIIPISATSKFNVDTVMKRIRELLPD 169


>gi|325116849|emb|CBZ52402.1| putative small GTP-binding protein [Neospora caninum Liverpool]
          Length = 917

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 79/192 (41%), Gaps = 33/192 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G  NAGKS+L N+L +++  +V   PGTT D +      +G+  ++ DTAG+  
Sbjct: 603 INVAVIGRPNAGKSTLVNSLLQEERMVVDSQPGTTTDAVGTLWTFQGHPFRLIDTAGVTR 662

Query: 280 TD-----DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334
                  D++ + G+ +T   + NA + +L  + +  ++   P               S+
Sbjct: 663 GWKMRHTDLLLEAGL-QTLRNIRNAQVCILCIDASLARDTGQP--------------ISS 707

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
           +     HL S   G  L   + K               +P ++R      + +  L+   
Sbjct: 708 HELALAHLASEKEGRCLAVCVTKW------------DLVPENEREKLR-REILERLQTGL 754

Query: 395 LNEKDCGLDIIA 406
            + K C +  +A
Sbjct: 755 GHLKGCPVVFVA 766



 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 20/111 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDV----------------AIVTDIPGTTRDVLTIDLD 263
            K+V++G  N GKSSLFN L                     AIV+   GT+RD       
Sbjct: 30  LKVVLVGRPNVGKSSLFNRLISGTRGHAASSPFAPLKRLQQAIVSPQAGTSRDRKEARAV 89

Query: 264 LEGYLVKISDTAGIRETDDIV----EKEGIKRTFLEVENADLILLLKEINS 310
             G  + + DT G+ +T+            K+    + +AD +L L +   
Sbjct: 90  FGGLQLLLVDTGGLEDTETTEACALLTNMRKQVRFALRDADSVLFLIDATE 140


>gi|322492573|emb|CBZ27850.1| GTP-binding protein-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 497

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 102/276 (36%), Gaps = 46/276 (16%)

Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
             E E+L   I +   + + +       E   +    ++ L HI +  + + D+    D+
Sbjct: 149 PGEEEALVLDIYNRLGLGKAVPFSARKREGLDMLAALLEPLYHIHAMRKVENDW----DI 204

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           ++ +       +  +++       +   G  IR    + I+G +N+GK+SL N L   + 
Sbjct: 205 EDLAMGGDEAAMEEIRD-------RNCTGRYIR----VAIVGRTNSGKTSLVNRLVGYER 253

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI----RETDDIVEKEGIKRTFLEVENAD 300
               D   TTRD + I    +G  +K+ DTAG+      TD          +  E+  A 
Sbjct: 254 NRAADESNTTRDPIEIACTYKGRKLKLIDTAGLARQRYRTDREFLSRIHSLSLNEIRYAH 313

Query: 301 LILLLKEINSKKEISF---------PKNIDFIFIGTKSDLY---STYTEEYDHLI----- 343
           +++++ +        +          +   F+    K D     S   E  D  I     
Sbjct: 314 VVVVVFDATEGHPNKYDMSVLHKVAQEGRPFVLCANKWDAVLDQSATAEAIDFKIKRQVQ 373

Query: 344 ----------SSFTGEGLEELINKIKSILSNKFKKL 369
                     S+ TG  L  L++++  +     K++
Sbjct: 374 EVKYSNAVVVSAHTGMNLTLLMDQVLELYDTWNKRV 409



 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 78/215 (36%), Gaps = 41/215 (19%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
              ++ I+G  N+GKSSLFN L +        +IV D  G TRD +     L+     + 
Sbjct: 27  QRLRVAIVGRMNSGKSSLFNLLCQDPTMPAKKSIVKDFNGITRDCVEAHAVLDDLHFTVI 86

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIF 324
           DT G+      V  + ++  F  VE AD  + +  ++                K +    
Sbjct: 87  DTPGL------VGGKLVEEAFRTVETADAAIFVTAVDEDVSAEEHDLIQYLAAKKMPTCL 140

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           +  K DL     E     I +  G G        K++  +  K+    +      L  L 
Sbjct: 141 LVNKMDLVPGEEEALVLDIYNRLGLG--------KAVPFSARKREGLDM------LAALL 186

Query: 385 QTVRYLEMASLNEKDCGLDIIA--------ENLRL 411
           + + ++      E D  ++ +A        E +R 
Sbjct: 187 EPLYHIHAMRKVENDWDIEDLAMGGDEAAMEEIRD 221


>gi|54292974|ref|YP_125389.1| hypothetical protein lpl0010 [Legionella pneumophila str. Lens]
 gi|53752806|emb|CAH14240.1| hypothetical protein lpl0010 [Legionella pneumophila str. Lens]
          Length = 414

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 102/288 (35%), Gaps = 23/288 (7%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +E + 
Sbjct: 114 RARTFEGKLQVELAQLQHLSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRERIR 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     Q +      +   + ++G++NAGKS+LFN L  +    V D    T
Sbjct: 173 YINKRLEKVRCSRDQNRQARRKASMPTVSLVGYTNAGKSTLFNVLTGEH-TYVADQLFAT 231

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     L+L G     ++DT G          E  + T  E + ADL+L + +I+    
Sbjct: 232 LDPTMRKLELPGSSAAILADTVGFIRDLPHHLVEAFRATLEETQQADLLLHVIDISDPNW 291

Query: 313 -----------EISFPKNIDFIFIGTKSDLYSTYTEEYDH-------LISSFTGEGLEEL 354
                      +     NI  I +  K DL   +  + D+        +S+ TG GL+ L
Sbjct: 292 RETVFEVQKVLDELKVNNIPVIQVFNKIDLQEGWQPKIDYTEDSCKVWLSATTGAGLDLL 351

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
              I + L          I   +  L      +  +   S++E    L
Sbjct: 352 KEAIATQLHGMILIEDIVIKPDQAKLRAQLYQLGAVLKESVDENGDWL 399


>gi|216264432|ref|ZP_03436424.1| GTP-binding protein Era [Borrelia burgdorferi 156a]
 gi|224532362|ref|ZP_03672992.1| GTP-binding protein Era [Borrelia burgdorferi WI91-23]
 gi|224533272|ref|ZP_03673866.1| GTP-binding protein Era [Borrelia burgdorferi CA-11.2a]
 gi|215980905|gb|EEC21712.1| GTP-binding protein Era [Borrelia burgdorferi 156a]
 gi|224512669|gb|EEF83040.1| GTP-binding protein Era [Borrelia burgdorferi WI91-23]
 gi|224513437|gb|EEF83794.1| GTP-binding protein Era [Borrelia burgdorferi CA-11.2a]
 gi|312147890|gb|ADQ30549.1| GTP-binding protein Era [Borrelia burgdorferi JD1]
 gi|312149136|gb|ADQ29207.1| GTP-binding protein Era [Borrelia burgdorferi N40]
          Length = 290

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+   ILG  + GKS+L N++    ++I++ IP TTR+ +      +   +   DT 
Sbjct: 1   MKSGF-AAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGT 327
           G   +        +K     +   +LIL + +I  K         EI     I F+ I  
Sbjct: 60  GFHLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILN 119

Query: 328 KSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL +T  +E                 IS+      EEL NKI    S      P    
Sbjct: 120 KIDLENTKIKEITQFLKEKGIEDSNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYY 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +   + +S+ +R   + +L E+
Sbjct: 180 TDQEINFRISEIIREKAIENLKEE 203


>gi|219684368|ref|ZP_03539312.1| GTP-binding protein Era [Borrelia garinii PBr]
 gi|219672357|gb|EED29410.1| GTP-binding protein Era [Borrelia garinii PBr]
          Length = 290

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + ILG  + GKS+L N++    ++I++ IP TTR+ +      +   +   DT 
Sbjct: 1   MKSGF-VAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGT 327
           G   +        +K     +   +LIL + +I  K         EI     I F+ +  
Sbjct: 60  GFHLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVLIN 119

Query: 328 KSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL +T  +E                 IS+      EEL NKI    S      P    
Sbjct: 120 KVDLKNTKIKEITQFLKEKGIEDNNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYY 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +   + +S+ +R   + +L E+
Sbjct: 180 TDQEINFRISEIIREKAIENLKEE 203


>gi|237708021|ref|ZP_04538502.1| GTP-binding protein Era [Bacteroides sp. 9_1_42FAA]
 gi|237725293|ref|ZP_04555774.1| GTP-binding protein Era [Bacteroides sp. D4]
 gi|265754192|ref|ZP_06089381.1| GTP-binding protein Era [Bacteroides sp. 3_1_33FAA]
 gi|229436559|gb|EEO46636.1| GTP-binding protein Era [Bacteroides dorei 5_1_36/D4]
 gi|229458007|gb|EEO63728.1| GTP-binding protein Era [Bacteroides sp. 9_1_42FAA]
 gi|263234901|gb|EEZ20456.1| GTP-binding protein Era [Bacteroides sp. 3_1_33FAA]
          Length = 293

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 74/163 (45%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   L+ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNLLVGERISIATFKSQTTRHRIMGILNTDDMQIVFSDTPGVVKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFI--FIGTKSDL--- 331
             +++  +  +   + +AD++L + ++  K +     I   +N+      +  K DL   
Sbjct: 67  YKLQESMLNFSESALVDADILLYVTDVVEKTDKNADFIEKVRNVKVPVLLLINKIDLTNQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                     +    +     IS+ +   ++ ++ +I+ +L +
Sbjct: 127 EDLVKLVEAWHEQLPQAEIIPISATSKFNVDTVMKRIRELLPD 169


>gi|89075087|ref|ZP_01161528.1| GTP-binding protein Era [Photobacterium sp. SKA34]
 gi|90580326|ref|ZP_01236133.1| GTP-binding protein Era [Vibrio angustum S14]
 gi|89049174|gb|EAR54739.1| GTP-binding protein Era [Photobacterium sp. SKA34]
 gi|90438628|gb|EAS63812.1| GTP-binding protein Era [Vibrio angustum S14]
          Length = 301

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 71/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  +      +GY     DT G+  E 
Sbjct: 10  IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVYVDTPGLHIEE 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L+L L +     +  E+   K     +  + +  K D   
Sbjct: 70  KRTINRLMNRAASSSLTDVELVLFLVDGTMWTADDEMVLNKLAKSQLPTVLLVNKVDNVK 129

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E + H               +S+  G  ++ +   ++  L       P    + +  
Sbjct: 130 DKHELFPHLQELASKMEFVDVIPVSAKHGTNIDAVEKIVRQHLPECEYYFPEEYVTDRSQ 189

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 190 RFMASEIIR 198


>gi|221068687|ref|ZP_03544792.1| GTP-binding protein Era [Comamonas testosteroni KF-1]
 gi|220713710|gb|EED69078.1| GTP-binding protein Era [Comamonas testosteroni KF-1]
          Length = 367

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 8/168 (4%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D S +      ++ +  +    +++      ++    E  R G  I I+G  N GKS+L 
Sbjct: 33  DPSLDYISAMLAAAKPGSTPTAIRDQEEEAPARVYAPEEQRCGL-IAIVGKPNVGKSTLM 91

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL-E 295
           NAL  + ++I +    TTR  +T     +       DT G +        + + +T +  
Sbjct: 92  NALVGQKISITSRKAQTTRHRITGIRTKDETQFVFVDTPGFQTKHSTALNKSLNKTVMGA 151

Query: 296 VENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
           + + DLIL + E       ++K    F   I  + I  K D      E
Sbjct: 152 IGDVDLILFVVEAGSFTLADAKVLSLFKPGIPTLLIANKLDTVGRRAE 199


>gi|213618630|ref|ZP_03372456.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 56

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 386 TVRYLEMASLNEKDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              +LE            +++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 1   AANHLEQGKAQLLGAWAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 56


>gi|70941965|ref|XP_741206.1| GTP-binding protein [Plasmodium chabaudi chabaudi]
 gi|56519438|emb|CAH78037.1| GTP-binding protein, putative [Plasmodium chabaudi chabaudi]
          Length = 380

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 79/194 (40%), Gaps = 25/194 (12%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI-----VIL 225
           +I+A   +    D     S    N +  + ++   +I + K+ E+     +        +
Sbjct: 17  YIKAQNFWELGFDTPFPCSXIHGNGLSEILDECIKYIKKVKINELEEEENEENTINISFI 76

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL--DLEGYLVKISDTAGIRETDD- 282
           G  N GKSS+ N +   +  IV+ I GTT D + + +    +  + ++ DTAGI++    
Sbjct: 77  GKPNTGKSSILNKILNCNRFIVSPIAGTTIDSIDVLVKGKDDKRMYRLIDTAGIQKRKKN 136

Query: 283 -------IVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIG 326
                    E     RT   ++ +D+ +L+          +IN  ++I   +N   I   
Sbjct: 137 VPFNEKTKFEYLLFNRTEKAIKRSDVCILVIDSFNGISSHDINIARKI-LEENKSCIICC 195

Query: 327 TKSDLYSTYTEEYD 340
            K DL     + ++
Sbjct: 196 NKWDLIYNKNDIFN 209


>gi|32491325|ref|NP_871579.1| hypothetical protein WGLp576 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166532|dbj|BAC24722.1| b2511 [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 456

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 27/199 (13%)

Query: 201 NDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           N +SS I    L +I  + Y KI I+G  N+GKS+L N + +++ + V++ PGTT+DVL 
Sbjct: 174 NKVSSAIKNLTLNKIEMDKYPKIAIIGRPNSGKSTLMNCILRQNRSTVSNSPGTTKDVLY 233

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVE--KEGIKRTFLEVENADLILLLKEI---NSKKEI 314
                +       DTAG+ +  + V   K  IK T   ++  D+ +L+ +     +K+++
Sbjct: 234 SLYSNKEKTYLFIDTAGLVKKKNFVHINKSVIKNTLNVIKKIDVSILVIDSCVGITKQDL 293

Query: 315 SFPK-----NIDFIFIGTKSDLYSTYTEEY----------------DHLISSFTGEGLEE 353
            F       N   I    K DL S   ++                  H IS+    G+  
Sbjct: 294 FFLNYILKYNKSLIIAVNKLDLISKKNKKEIKEKIIKKISFFKFIKIHFISAICSFGINN 353

Query: 354 LINKIKSILSNKFKKLPFS 372
           L+  IK+   NK  K   S
Sbjct: 354 LLYSIKATYKNKLLKFETS 372



 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 3/138 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N+GKS+LFN L KK  A+V+  PG T D   +    +       DT  I   +
Sbjct: 5   VSIIGKQNSGKSTLFNKLTKKRRALVSKDPGFTSDRQYLLRIWKKRKFIFIDTPSIYLIN 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
              +     ++ + +E + +ILL+    S   +    +I       K + +     + + 
Sbjct: 65  KKSKF--NNQSIIAIEESHVILLVIRYESYGSLDNHLSIIAFLKRNKKNFFVILNLDDNF 122

Query: 342 LISSFTGEGLEEL-INKI 358
             +    + +  L I+KI
Sbjct: 123 NKNYNFTDKIYFLGIDKI 140


>gi|307719473|ref|YP_003875005.1| hypothetical protein STHERM_c17970 [Spirochaeta thermophila DSM
           6192]
 gi|306533198|gb|ADN02732.1| hypothetical protein STHERM_c17970 [Spirochaeta thermophila DSM
           6192]
          Length = 423

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 2/98 (2%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           +    +IV+ G  NAGKSSL NA+ +K+VAIV+D PGTT D +T   +L G   V  +DT
Sbjct: 18  LAERTRIVLFGLRNAGKSSLMNAIFEKEVAIVSDQPGTTTDPVTRAYELIGAGPVAFTDT 77

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           AG+ +   +     I+R    +  AD+ LL+  +    
Sbjct: 78  AGLDDEGPLG-SIRIERAKKALAQADIALLVTPLTRPP 114


>gi|20093476|ref|NP_613323.1| small, Ras-like GTPase [Methanopyrus kandleri AV19]
 gi|19886302|gb|AAM01253.1| Small, Ras-like GTPase [Methanopyrus kandleri AV19]
          Length = 196

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 25/179 (13%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           ++ E+    ++I +LG  NAGKS+L NAL  ++V  V+++PGTT+ V         + + 
Sbjct: 8   EVPELDSRAFRIAVLGPENAGKSTLVNALMGREVTEVSEVPGTTKTVSGYRWTSREFPLY 67

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVE---NADLILLLKEIN---------SKKEISFPK 318
           + DT G+ +      K G+ R     E     DL L + ++          +   I +  
Sbjct: 68  VFDTVGLADERGKRSKRGV-RAEDVAEKLGRYDLALFVVDVTRHVGPETLRALHVIKYAA 126

Query: 319 NIDFIFIGTKSDLYST------------YTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           +++ + +  K DL                T      +S+ TGEG+  L+ +I+  +  K
Sbjct: 127 DLETLLVANKIDLLDRGELEERLERIRERTGHRPIPVSALTGEGIGRLLREIERRVREK 185


>gi|119503989|ref|ZP_01626070.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2080]
 gi|119459992|gb|EAW41086.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2080]
          Length = 300

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 69/188 (36%), Gaps = 22/188 (11%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETD 281
            I+G  N GKS+L N    + ++I +  P TTR  +       G  V   DT G+  E  
Sbjct: 12  AIIGRPNVGKSTLLNYALGQKISITSRKPQTTRHQVMGIYTDSGDQVVFVDTPGMHLEQG 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK----NIDFIFIGTKSD---- 330
             + +   +     + + DL+L + + N   S+ ++              +  K D    
Sbjct: 72  KAINRYMNRAASSALADVDLVLFVVDRNRWTSEDDLVLEALQHTETPVALVINKIDRLED 131

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     + + Y  +    IS+     L  L+  I++ + +     P    + +   
Sbjct: 132 QGVLLPWTESIRAKYGFDAIFPISALRQANLPALMTYIRNKMPSGVHFFPEDQVTDRSER 191

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 192 FLAAELIR 199


>gi|261211554|ref|ZP_05925842.1| GTP-binding protein Era [Vibrio sp. RC341]
 gi|260839509|gb|EEX66135.1| GTP-binding protein Era [Vibrio sp. RC341]
          Length = 324

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 30/216 (13%)

Query: 202 DISSHISQGKLG-------EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI ++ +    G       E    G+ + I+G  N GKS+L N L  + ++I +  P TT
Sbjct: 7   DIDAYFASRSEGQTATSTPEDQHCGF-VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTT 65

Query: 255 RDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NS 310
           R  +        Y     DT G+  E    + +   +     + + +L+L + E     +
Sbjct: 66  RHRIMGVETEGKYQAIYVDTPGLHIEEKRAINRLMNRAASSSLSDVNLVLFVVEGTHWTA 125

Query: 311 KKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL--------------ISSFTGEGLE 352
             E+ F K    N   +    K D      E   H+              IS+  G+  +
Sbjct: 126 DDEMVFTKLQKANFPVVLCVNKVDQVKDRNEVMLHMLELSKRMPFVDIVPISAKQGKNTD 185

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            L   ++  L       P    + +   +  S+ VR
Sbjct: 186 VLKKHVREHLPKAVHHFPEEYVTDRSQRFMASEIVR 221


>gi|326334918|ref|ZP_08201119.1| GTP-binding protein Era [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692955|gb|EGD34893.1| GTP-binding protein Era [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 292

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G+ N GKS+L NAL  + ++I+T    TTR  +   +  E + +  SDT GI +  
Sbjct: 7   INIIGNPNVGKSTLLNALVGERLSIITAKAQTTRHRIFGIVSGEDFQMIFSDTPGIIKPA 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--KEISFPKNI-----DFIFIGTKSDLYS- 333
             ++   +       E+AD+++ + EI  K  K+  F K I       + +  K D    
Sbjct: 67  YQLQSSMMDFVRDAFEDADILIYMVEIGEKDLKDEEFFKKINEAKVPILLLVNKIDRSDE 126

Query: 334 ------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                          +   + IS+     +E L +++  +L       P    + K   +
Sbjct: 127 PSVKQALSYWQEKVPKAEVYPISALENFNVEPLFHRLLELLPPSPAFYPKDQLTDKPERF 186

Query: 382 HLSQTVR 388
            +++T+R
Sbjct: 187 FVNETIR 193


>gi|86134519|ref|ZP_01053101.1| GTP-binding protein Era [Polaribacter sp. MED152]
 gi|85821382|gb|EAQ42529.1| GTP-binding protein Era [Polaribacter sp. MED152]
          Length = 293

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I+T    TTR  +   ++ E Y +  SDT GI +  
Sbjct: 8   VNIIGNPNVGKSTLMNALVGEKLSIITPKAQTTRHRILGIVNHEEYQIIFSDTPGIIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDL--- 331
             ++   +       E+AD+++ + E+     K E  F K     I  I +  K D    
Sbjct: 68  YELQASMMDFVKSAFEDADVLIYMVEVGETALKNEAFFNKIIHSKIPVILLLNKIDKSNK 127

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                            + ++IS+     ++ +  KI  +L  
Sbjct: 128 EEVDEKIAYWREKVPNSFVYVISALERFNVDAVFYKIIELLPE 170


>gi|332299922|ref|YP_004441843.1| small GTP-binding protein [Porphyromonas asaccharolytica DSM 20707]
 gi|332176985|gb|AEE12675.1| small GTP-binding protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 399

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 21/175 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
              +++++G  N+GKS+LFN L +++ ++V+D  GTT D +    +L     + + DT G
Sbjct: 10  ERKRLLLVGQVNSGKSTLFNRLLRQERSLVSDQAGTTTDSVEKLFELPSVGPILLVDTPG 69

Query: 277 IRETDDIVEKEGIKR-TFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSD 330
           +   DD       +R T L + +ADL+L L       +          N+  + I  ++D
Sbjct: 70  L--ADDTPLGAERQRVTQLALSSADLVLYLLSCEDSLDTPIIAALRKANVPTLPIIARAD 127

Query: 331 LY--STYTEEYDHLISSF----------TGEGLEELINKIKSILSNKFKKLPFSI 373
           L   S++ E  + ++  F            E L+ L+ KIK  L N  +  P  +
Sbjct: 128 LPEQSSWLERQEEIVQCFGHAPLSLRQNDDESLDTLLEKIKQTLHNVSEPTPSLL 182


>gi|268679661|ref|YP_003304092.1| GTP-binding protein Era [Sulfurospirillum deleyianum DSM 6946]
 gi|268617692|gb|ACZ12057.1| GTP-binding protein Era [Sulfurospirillum deleyianum DSM 6946]
          Length = 296

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 70/187 (37%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKSSL N L  + +A+V+     TR  L I    E   +   DT GI E +
Sbjct: 10  VAVIGRPNAGKSSLLNWLIGEKLALVSHKANATRKRLNIIAMHENTQIIFIDTPGIHEQE 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFI-GTKSD----- 330
            ++ +  ++     + + DLIL L   +   +     ++  KN     +  TK+D     
Sbjct: 70  RLLNQFMLEEAMKAMGDCDLILFLAPASDSIQNYIDFLALNKNHIQHMVLLTKTDSVSQT 129

Query: 331 -LYSTYTEEYDHLI--------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            L+    E              S   G     L+  I   +          I + +R   
Sbjct: 130 ALFDKIKEYQAFQDKFLALIPVSIKKGISQSYLLETISKQMPEHPYLYDPEILTTERLRD 189

Query: 382 HLSQTVR 388
              + +R
Sbjct: 190 IYKELIR 196


>gi|315282359|ref|ZP_07870786.1| GTP-binding protein Era [Listeria marthii FSL S4-120]
 gi|313613991|gb|EFR87708.1| GTP-binding protein Era [Listeria marthii FSL S4-120]
          Length = 301

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 80/211 (37%), Gaps = 23/211 (10%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   +  
Sbjct: 1   MSEPFKSGF-VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFI 323
            DT GI +    +    +K      +  DLI  + + +       +  I   KN      
Sbjct: 60  IDTPGIHKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVF 119

Query: 324 FIGTKSDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K DL +                 E    IS+  G  +  L+ +  + L       P
Sbjct: 120 LLINKIDLIAPEDLFKLIEQYRELMDFEEIIPISALQGNNVPNLLEQTNANLEIGPMYYP 179

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
               +     + +S+ +R  ++  L  ++  
Sbjct: 180 KDQITDHPERFIISELIRE-QVLQLTREEVP 209


>gi|26369239|dbj|BAC25298.1| unnamed protein product [Mus musculus]
          Length = 157

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           S  TG G++ L+  +K+ L+           + +  RH YHL   +  L    L      
Sbjct: 62  SCHTGAGMDSLLQALKTELAAVCGDPSTGPPLLTRVRHQYHLQGCLDALGHYQLA---TD 118

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           L + AE LR A   L  +TG    E++LD+IF  FC+GK
Sbjct: 119 LALAAEALRQARRQLNHLTGGGGTEEILDLIFQDFCVGK 157


>gi|264677119|ref|YP_003277025.1| GTP-binding protein Era [Comamonas testosteroni CNB-2]
 gi|299530660|ref|ZP_07044075.1| GTP-binding protein Era [Comamonas testosteroni S44]
 gi|262207631|gb|ACY31729.1| GTP-binding protein Era [Comamonas testosteroni CNB-2]
 gi|298721176|gb|EFI62118.1| GTP-binding protein Era [Comamonas testosteroni S44]
          Length = 367

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 8/168 (4%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           D S +      ++ +  +    +++      ++    E  R G  I I+G  N GKS+L 
Sbjct: 33  DPSLDYISAMLAAAKPGSTPTAIRDQEEEAPARVYAPEEQRCGL-IAIVGKPNVGKSTLM 91

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL-E 295
           NAL  + ++I +    TTR  +T     +       DT G +        + + +T +  
Sbjct: 92  NALVGQKISITSRKAQTTRHRITGIRTKDETQFVFVDTPGFQTKHSTALNKSLNKTVMGA 151

Query: 296 VENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
           + + DLIL + E       ++K    F   I  + I  K D      E
Sbjct: 152 IGDVDLILFVVEAGSFTLADAKVLSLFKPGIPTLLIANKLDTVGRRAE 199


>gi|217964392|ref|YP_002350070.1| GTP-binding protein Era [Listeria monocytogenes HCC23]
 gi|290894223|ref|ZP_06557192.1| GTP-binding protein Era [Listeria monocytogenes FSL J2-071]
 gi|254783659|sp|B8DE49|ERA_LISMH RecName: Full=GTPase Era
 gi|217333662|gb|ACK39456.1| GTP-binding protein Era [Listeria monocytogenes HCC23]
 gi|290556220|gb|EFD89765.1| GTP-binding protein Era [Listeria monocytogenes FSL J2-071]
 gi|307571043|emb|CAR84222.1| GTP-binding protein (Bex protein) [Listeria monocytogenes L99]
          Length = 301

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   +  
Sbjct: 1   MSEPFKSGF-VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFI 323
            DT GI +    +    +K      +  DLI  + + +       +  I   KN      
Sbjct: 60  IDTPGIHKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVF 119

Query: 324 FIGTKSDLYS 333
            +  K DL +
Sbjct: 120 LLINKIDLIA 129


>gi|218282280|ref|ZP_03488579.1| hypothetical protein EUBIFOR_01161 [Eubacterium biforme DSM 3989]
 gi|218216748|gb|EEC90286.1| hypothetical protein EUBIFOR_01161 [Eubacterium biforme DSM 3989]
          Length = 319

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 24/216 (11%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
             I  G   +  ++G+ I I+G  NAGKS+L NAL K+ +AI++D P TTR+ ++  L  
Sbjct: 10  QIILNGGKMKNYKSGF-IAIVGRPNAGKSTLLNALLKEKIAIMSDKPNTTRNNISGILTH 68

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS 315
           E       DT GI +    + +   K  +  +E+ D+I  + +             K I 
Sbjct: 69  EDCQYVFVDTPGIHKPQQQLGRVLNKNAYSAMEDCDVIGWIVDGTQSFGTGDSFILKRIE 128

Query: 316 FPKNIDFIFIGTKSDLYST---------YTEEYDHLI----SSFTGEGLEELINKIKSIL 362
              +   + I  K D             + +++D       S+   + L+EL++  K  L
Sbjct: 129 TL-HKPVVLIMNKIDKLPKEQLLKRLVYWQKQHDFNDIVPISALDKDNLDELLHVFKGYL 187

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                  P  + S     + + + VR   +   +E+
Sbjct: 188 PEGEPMFPEEMKSDHDINFRMCEIVREKILFKTHEE 223


>gi|189463676|ref|ZP_03012461.1| hypothetical protein BACINT_00007 [Bacteroides intestinalis DSM
           17393]
 gi|189438626|gb|EDV07611.1| hypothetical protein BACINT_00007 [Bacteroides intestinalis DSM
           17393]
          Length = 293

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 21/151 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I T    TTR  +    + +   +  SDT G+ +  
Sbjct: 7   VNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGVLKPQ 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++       N   E      I  + +  K DL   
Sbjct: 67  YKLQESMLNFSTSALTDADVLLYVTDVVETPDKHNEFVEKVAHMEIPVLLLINKIDLS-- 124

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                         E L EL+   K++L N 
Sbjct: 125 ------------NQEKLVELVEAWKALLPNA 143


>gi|295395416|ref|ZP_06805615.1| GTP-binding protein HflX [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971738|gb|EFG47614.1| GTP-binding protein HflX [Brevibacterium mcbrellneri ATCC 49030]
          Length = 510

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 95/248 (38%), Gaps = 28/248 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+ +I +     + K     RN    + I+G++NAGKSSL N L   
Sbjct: 245 ELDRRRIRTRMAKLRREIKAMAPARETKRSNRTRNKVPSVAIVGYTNAGKSSLLNRLTDA 304

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +  ++  T    +      +G +   +DT G          E  + T  E  +ADL+
Sbjct: 305 GVMVKNELFATLDPTVRQAHTADGRVFTYTDTVGFVRNLPHQLVEAFRSTLEEAADADLL 364

Query: 303 LLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLI------- 343
           L + + +    ++  K            +I  + +  K+D+  + T              
Sbjct: 365 LHIVDASHTDPLAQIKAVHEVLDEAQTIDIPELIVFNKADIADSDTLARVLNTYPNAVVV 424

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS------QTVRYLEMASLNE 397
           S+ TG+G++EL  +I  +L      +   +P  +  L   +      ++ +Y    +L  
Sbjct: 425 SAHTGQGIDELRERIDDLLPRPSHHITALVPFDRGDLIARAHDEGTVESEKYTAQGTLLV 484

Query: 398 KDCGLDII 405
                D++
Sbjct: 485 AMVDPDLL 492


>gi|171057288|ref|YP_001789637.1| GTP-binding protein Era [Leptothrix cholodnii SP-6]
 gi|170774733|gb|ACB32872.1| GTP-binding protein Era [Leptothrix cholodnii SP-6]
          Length = 348

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            E ED+++    +  ++     ++ ++ +      E    G  I I+G  N GKS+L N 
Sbjct: 22  DEPEDIEDPDESDDTDEPEDDGDETAAIV-----HENPHCGL-IAIVGRPNVGKSTLLNT 75

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE--- 295
           L  + V+I +    TTR  +T             DT G +          + R   +   
Sbjct: 76  LIGQKVSITSRKAQTTRHRITGICTHGDTQFVFVDTPGFQTRHTNRGTSALNRNLNKTVQ 135

Query: 296 --VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
             + + D++L + E       ++K     P     + +  K D+     +
Sbjct: 136 SVLGDVDVVLFVVEAGRFGPDDAKVLALLPPGRPTLLVANKLDMVQRRAD 185


>gi|149186755|ref|ZP_01865066.1| GTP-binding protein Era [Erythrobacter sp. SD-21]
 gi|148829663|gb|EDL48103.1| GTP-binding protein Era [Erythrobacter sp. SD-21]
          Length = 310

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 81/222 (36%), Gaps = 27/222 (12%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---- 262
           + Q + G   R G  + ++G  NAGKS+L N L  + VAI +    TTR  +        
Sbjct: 3   LRQAQDGSETRCGL-VAVIGAPNAGKSTLVNQLVGQKVAITSAKAQTTRARMLGIALHKS 61

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE--------INSKKEI 314
           +     + + DT GI      +++  +   +   E+AD +LL+ +        +    E 
Sbjct: 62  EEADTQMVLIDTPGIFSPKRKLDRAMVSAAWDGTESADAVLLMVDPIKQRRHELEPLVEA 121

Query: 315 SFPKNIDFIFIGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
              +    I +  K D             L         + +S+ T +G+ EL   + ++
Sbjct: 122 LAKRPERKILVLNKVDAAKKEPLLALAQELAEKVEFAEVYFVSALTSDGVPELKESLAAM 181

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
           +       P    S        ++  R      L+E +   D
Sbjct: 182 MPEGPWMYPEDQVSDASERLLATEITREQLYKQLHE-ELPYD 222


>gi|254932647|ref|ZP_05266006.1| GTP-binding protein Era [Listeria monocytogenes HPB2262]
 gi|293584206|gb|EFF96238.1| GTP-binding protein Era [Listeria monocytogenes HPB2262]
 gi|328474974|gb|EGF45768.1| GTPase Era [Listeria monocytogenes 220]
 gi|332311903|gb|EGJ24998.1| GTP-binding protein Era [Listeria monocytogenes str. Scott A]
          Length = 301

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   +  
Sbjct: 1   MSEPFKSGF-VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFI 323
            DT GI +    +    +K      +  DLI  + + +       +  I   KN      
Sbjct: 60  IDTPGIHKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVF 119

Query: 324 FIGTKSDLYS 333
            +  K DL +
Sbjct: 120 LLINKIDLIA 129


>gi|253996999|ref|YP_003049063.1| GTP-binding protein Era [Methylotenera mobilis JLW8]
 gi|253983678|gb|ACT48536.1| GTP-binding protein Era [Methylotenera mobilis JLW8]
          Length = 310

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 68/188 (36%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +    +AI +    TTR  L      +       DT G ++  
Sbjct: 26  VAIVGRPNVGKSTLLNHILGMKLAITSRKAQTTRHRLLGIHTTDDTQYLFVDTPGFQQKH 85

Query: 282 DIVEKEGIKRTF-LEVENADLILLLK------EINSKKEISFPKNIDFIFIGTKSD---- 330
                +G+ +T    +   D++L +       + + K           I +  K D    
Sbjct: 86  LNALNKGLNKTVTQVLTEVDVVLFVIEPMKLGDADRKVLQLLSDKTPTILVVNKLDLMGD 145

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 L   +  E+       +S+     L+EL+  I++ L  +         + K   
Sbjct: 146 KGNILPLIQDFDLEFPFSEIVPVSAKKSLNLDELLKSIRTYLPEQEAIYSEDELTDKNER 205

Query: 381 YHLSQTVR 388
           +  ++ VR
Sbjct: 206 FLAAELVR 213


>gi|254524023|ref|ZP_05136078.1| GTP-binding protein Era [Stenotrophomonas sp. SKA14]
 gi|219721614|gb|EED40139.1| GTP-binding protein Era [Stenotrophomonas sp. SKA14]
          Length = 287

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 72/199 (36%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NAL    V+IV++ P TTR  L          + + DT G+ +  
Sbjct: 1   MAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATYPEGQLVLVDTPGLHKVQ 60

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSD--- 330
                  + R     +E  D  LL+ E     E       +     I  + +  K D   
Sbjct: 61  KRAMNRVMNRAARGSLEGVDAGLLVIEAGRWDEEDSLAFNVLRDAGIPVVLVVNKIDRLK 120

Query: 331 -------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                       TE  D    H IS+    GLE L+  +  +L            + +  
Sbjct: 121 EKGALLPFLQQVTEGRDFAAVHPISAQKRNGLEALVRDVLKLLPEAPPMFGEDEITDRSQ 180

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +   + VR   M  L E+
Sbjct: 181 RFLAGELVREQLMRQLGEE 199


>gi|296084119|emb|CBI24507.3| unnamed protein product [Vitis vinifera]
          Length = 739

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 3/157 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++  ++ I+G  N GKS+L N L +++  +V    G TRD +      +G  V + D
Sbjct: 395 EESKSPLQLAIVGRPNVGKSTLLNTLLQENRVLVGPEAGLTRDSVRAQFQFQGRTVYLVD 454

Query: 274 TAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
           TAG     + +       + ++   +  A ++ L+ +               + I  ++ 
Sbjct: 455 TAGWLQRTKQEKGPASLSVMQSRKSIMRAHVVALVLDAEEIANARSSMKHAEVVIARRAV 514

Query: 331 LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                     + +    G    +L  K+   +  + +
Sbjct: 515 EEGRGLVVIVNKMDLLKGRKNSKLYEKVMEAVPEEIQ 551



 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 28/172 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIP--GTTRDVLTIDLDLEGYLVKISDTAGIR- 278
           ++++G  N GKS+LFN L ++  A+V + P    TRD       L     ++ D+AG+  
Sbjct: 145 VILVGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDFREGIAKLGDLRFRVLDSAGLEM 204

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIGT 327
             T   +       T   +  +   + L ++ +          K        I  I +  
Sbjct: 205 AATSGSILGRTADMTANVLARSQFAIFLIDVRAGLHPMDLEVGKWLRRHAPGICTILVMN 264

Query: 328 KSDLYSTYTEEY--------------DHLISSFTGEGLEELINKIKSILSNK 365
           KS+                          IS+ TG G+ EL   ++ +L + 
Sbjct: 265 KSESLDDGAGLLAAAAGEAYELGFGDPIAISAETGLGMAELYESLRPLLEDH 316


>gi|256851187|ref|ZP_05556576.1| GTP-binding protein Era [Lactobacillus jensenii 27-2-CHN]
 gi|260660611|ref|ZP_05861526.1| GTP-binding protein Era [Lactobacillus jensenii 115-3-CHN]
 gi|282934653|ref|ZP_06339896.1| GTP-binding protein Era [Lactobacillus jensenii 208-1]
 gi|297206052|ref|ZP_06923447.1| GTP-binding protein Era [Lactobacillus jensenii JV-V16]
 gi|256616249|gb|EEU21437.1| GTP-binding protein Era [Lactobacillus jensenii 27-2-CHN]
 gi|260548333|gb|EEX24308.1| GTP-binding protein Era [Lactobacillus jensenii 115-3-CHN]
 gi|281301228|gb|EFA93529.1| GTP-binding protein Era [Lactobacillus jensenii 208-1]
 gi|297149178|gb|EFH29476.1| GTP-binding protein Era [Lactobacillus jensenii JV-V16]
          Length = 302

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 81/205 (39%), Gaps = 22/205 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ + ++G  N GKS+L N L  + V I ++   TTR+ ++     E       DT G
Sbjct: 8   KSGF-VALIGRPNVGKSTLMNHLIGQKVVITSNKSQTTRNKISGIFTTENLQAVFVDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------KEISFPKNIDFIFIGTKS 329
           I +  + ++    K +   + + DL+  + E            ++     +    I  K 
Sbjct: 67  IHKPQNKLDDYMDKASLSSLNDVDLVFFMVEPEKVGKGDEYIADLLSKVKVPIFLIINKI 126

Query: 330 D---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           D         +  +Y +         IS+  G  +E+L+  +   L    +       + 
Sbjct: 127 DQVHPDSLLPVIESYQKLGKFAEIVPISATNGNNMEDLVATLYKYLPEGPQFYGSDEVTD 186

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCG 401
           +   + +++ +R  ++  L +++  
Sbjct: 187 RPEYFVVAELIRE-QILRLTQQEIP 210


>gi|218530504|ref|YP_002421320.1| GTP-binding protein Era [Methylobacterium chloromethanicum CM4]
 gi|240138863|ref|YP_002963338.1| GTP-binding protein [Methylobacterium extorquens AM1]
 gi|218522807|gb|ACK83392.1| GTP-binding protein Era [Methylobacterium chloromethanicum CM4]
 gi|240008835|gb|ACS40061.1| GTP-binding protein [Methylobacterium extorquens AM1]
          Length = 326

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 22/202 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +QG+  E  R G+ + ++G  NAGKS+L NAL    V+IV+    TTR ++   +     
Sbjct: 23  AQGQPREETRAGF-VALIGVPNAGKSTLLNALVGAKVSIVSRKVQTTRALVRGIVMEGNA 81

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----N 319
            + + DT GI      +++  +   +    +AD I LL +    ++ + E    +     
Sbjct: 82  QIVLVDTPGIFAPKRRLDRAMVHSAWSGAADADAICLLIDARKGVDEEVETILRRLPEVK 141

Query: 320 IDFIFIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
              I I  K DL +                 E   LIS+  G+G+ +L   + + +    
Sbjct: 142 RPKILILNKIDLIARERLLELVAKLNAMVPFEDTFLISALKGDGIADLRKALAARMPPSP 201

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
              P    S        ++  R
Sbjct: 202 WLYPEDQISDAPLRMLAAEITR 223


>gi|150395907|ref|YP_001326374.1| GTP-binding protein Era [Sinorhizobium medicae WSM419]
 gi|189037667|sp|A6U7A9|ERA_SINMW RecName: Full=GTPase Era
 gi|150027422|gb|ABR59539.1| GTP-binding protein Era [Sinorhizobium medicae WSM419]
          Length = 310

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 22/212 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
                    R+G+ + ++G +NAGKS+L N L    V+IV+    TTR ++      +  
Sbjct: 8   DTAAAAVPTRSGF-VALIGATNAGKSTLINRLVGAKVSIVSHKVQTTRAIVRGIAIHDNA 66

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKN 319
            +   DT GI +    +++  +   +   ++ADLI+LL         + ++  E     +
Sbjct: 67  QIVFMDTPGIFKPRRRLDRAMVTTAWGGAKDADLIMLLIDSERGIKGDADTILEGLKDVH 126

Query: 320 IDFIFIGTKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKF 366
              + +  K D         L +   E    E   +IS+ TG G E++++ +   L    
Sbjct: 127 QPKVLVLNKVDQVRREDLLKLAAAANEVVAFERTFMISALTGSGCEDVMDYLAERLPEGP 186

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
              P    S        ++  R      L+++
Sbjct: 187 WYYPEDQISDLPMRQLAAEITREKLFLRLHQE 218


>gi|327484952|gb|AEA79359.1| GTP-binding protein Era [Vibrio cholerae LMA3894-4]
          Length = 325

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 78/217 (35%), Gaps = 31/217 (14%)

Query: 202 DISSHISQGKLG--------EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           DI ++ +    G        E    G+ + I+G  N GKS+L N L  + ++I +  P T
Sbjct: 7   DIDAYFASRSEGQTTATSTPEDQHCGF-VAIVGRPNVGKSTLLNNLLGQKISITSRKPQT 65

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---N 309
           TR  +        Y     DT G+  E    + +   +     + + +L+L + E     
Sbjct: 66  TRHRIMGVETEGKYQAIYVDTPGLHIEEKRAINRLMNRAASSSLSDVNLVLFVVEGTHWT 125

Query: 310 SKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL--------------ISSFTGEGL 351
           +  E+ F K    N   +    K D      E   H+              IS+  G+  
Sbjct: 126 ADDEMVFNKLQKANFPVVLCVNKVDQVKDRNEVMLHMLELSKRMPFVDIVPISAKQGKNT 185

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           + L   ++  L       P    + +   +  S+ VR
Sbjct: 186 DVLKKHVREHLPKAVHHFPEEYVTDRSQRFMASEIVR 222


>gi|16803502|ref|NP_464987.1| GTP-binding protein Era [Listeria monocytogenes EGD-e]
 gi|46907690|ref|YP_014079.1| GTP-binding protein Era [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093486|ref|ZP_00231249.1| GTP-binding protein Era [Listeria monocytogenes str. 4b H7858]
 gi|47095413|ref|ZP_00233023.1| GTP-binding protein Era [Listeria monocytogenes str. 1/2a F6854]
 gi|224501598|ref|ZP_03669905.1| GTP-binding protein Era [Listeria monocytogenes FSL R2-561]
 gi|226224063|ref|YP_002758170.1| GTP binding protein [Listeria monocytogenes Clip81459]
 gi|254824479|ref|ZP_05229480.1| GTP-binding protein Era [Listeria monocytogenes FSL J1-194]
 gi|254827750|ref|ZP_05232437.1| GTP-binding protein Era [Listeria monocytogenes FSL N3-165]
 gi|254829779|ref|ZP_05234434.1| GTP-binding protein Era [Listeria monocytogenes 10403S]
 gi|254852087|ref|ZP_05241435.1| GTP-binding protein Era [Listeria monocytogenes FSL R2-503]
 gi|254898372|ref|ZP_05258296.1| GTP-binding protein Era [Listeria monocytogenes J0161]
 gi|254912136|ref|ZP_05262148.1| GTP-binding protein Era [Listeria monocytogenes J2818]
 gi|254936464|ref|ZP_05268161.1| GTP-binding protein Era [Listeria monocytogenes F6900]
 gi|255521277|ref|ZP_05388514.1| GTP-binding protein Era [Listeria monocytogenes FSL J1-175]
 gi|284801849|ref|YP_003413714.1| GTP-binding protein Era [Listeria monocytogenes 08-5578]
 gi|284994991|ref|YP_003416759.1| GTP-binding protein Era [Listeria monocytogenes 08-5923]
 gi|300765605|ref|ZP_07075584.1| GTP-binding protein Era [Listeria monocytogenes FSL N1-017]
 gi|21263579|sp|Q8Y750|ERA_LISMO RecName: Full=GTPase Era
 gi|67460115|sp|Q71ZK8|ERA_LISMF RecName: Full=GTPase Era
 gi|259645949|sp|C1KVA9|ERA_LISMC RecName: Full=GTPase Era
 gi|16410891|emb|CAC99540.1| lmo1462 [Listeria monocytogenes EGD-e]
 gi|46880959|gb|AAT04256.1| GTP-binding protein Era [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47016234|gb|EAL07157.1| GTP-binding protein Era [Listeria monocytogenes str. 1/2a F6854]
 gi|47018162|gb|EAL08932.1| GTP-binding protein Era [Listeria monocytogenes str. 4b H7858]
 gi|225876525|emb|CAS05234.1| Putative GTP binding protein [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258600129|gb|EEW13454.1| GTP-binding protein Era [Listeria monocytogenes FSL N3-165]
 gi|258605386|gb|EEW17994.1| GTP-binding protein Era [Listeria monocytogenes FSL R2-503]
 gi|258609056|gb|EEW21664.1| GTP-binding protein Era [Listeria monocytogenes F6900]
 gi|284057411|gb|ADB68352.1| GTP-binding protein Era [Listeria monocytogenes 08-5578]
 gi|284060458|gb|ADB71397.1| GTP-binding protein Era [Listeria monocytogenes 08-5923]
 gi|293590107|gb|EFF98441.1| GTP-binding protein Era [Listeria monocytogenes J2818]
 gi|293593717|gb|EFG01478.1| GTP-binding protein Era [Listeria monocytogenes FSL J1-194]
 gi|300513706|gb|EFK40774.1| GTP-binding protein Era [Listeria monocytogenes FSL N1-017]
 gi|328465505|gb|EGF36734.1| GTPase Era [Listeria monocytogenes 1816]
          Length = 301

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   +  
Sbjct: 1   MSEPFKSGF-VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFI 323
            DT GI +    +    +K      +  DLI  + + +       +  I   KN      
Sbjct: 60  IDTPGIHKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVF 119

Query: 324 FIGTKSDLYS 333
            +  K DL +
Sbjct: 120 LLINKIDLIA 129


>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040618|gb|ACT57414.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 311

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 21/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N      V+IVT    TTR ++   +  +   +   DT GI    
Sbjct: 25  VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSDLYS 333
           D   K  I+ ++  +++AD++ L+ + + + +++          ++   I I  K D   
Sbjct: 85  DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144

Query: 334 TYTE-------------EYDHLISSFTGEGLEELINKIKSILS 363
                            E   ++S+  G G ++++N + S L 
Sbjct: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187


>gi|227821404|ref|YP_002825374.1| GTP-binding protein Era [Sinorhizobium fredii NGR234]
 gi|227340403|gb|ACP24621.1| GTP-binding protein [Sinorhizobium fredii NGR234]
          Length = 309

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 87/216 (40%), Gaps = 22/216 (10%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
                 G      R+G+ + ++G +NAGKS+L N L    V+IV+    TTR ++     
Sbjct: 3   DKEQDSGAGHTATRSGF-VALIGATNAGKSTLVNHLVGAKVSIVSHKVQTTRAIIRGIAI 61

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFP 317
            +   +   DT GI +    +++  +   +   ++AD I+LL +       +++  +   
Sbjct: 62  HDNAQIVFMDTPGIFKPRRRLDRAMVTTAWGGAKDADQIVLLIDSERGLRGDAEAILEAL 121

Query: 318 KN--IDFIFIGTKSD---------LYSTYTE----EYDHLISSFTGEGLEELINKIKSIL 362
           K+     I +  K D         L +   E    E   +IS+  G G ++L++ + + L
Sbjct: 122 KDVPQPKILVLNKIDRVRPEDLLKLAAAANEVVSFERTFMISALNGSGCKDLMDYLATAL 181

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                  P    S        ++  R      L+++
Sbjct: 182 PEGPWYYPEDQISDLPMRQLAAEITREKLFLRLHQE 217


>gi|40063137|gb|AAR37984.1| GTP-binding protein Era [uncultured marine bacterium 561]
          Length = 300

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 69/188 (36%), Gaps = 22/188 (11%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETD 281
            I+G  N GKS+L N    + ++I +  P TTR  +       G  V   DT G+  E  
Sbjct: 12  AIIGRPNVGKSTLLNYALGQKISITSRKPQTTRHQVMGIYTDSGDQVVFVDTPGMHLEQG 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK----NIDFIFIGTKSD---- 330
             + +   +     + + DL+L + + N   S+ ++              +  K D    
Sbjct: 72  KAINRYMNRAASSALADVDLVLFVVDRNRWTSEDDLVLEALQHTETPVALVINKIDRLED 131

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     + + Y  +    IS+     L  L+  I++ + +     P    + +   
Sbjct: 132 QAVLLPWTESIRAKYGFDAIFPISALRQANLPALMTYIRNKMPSGVHFFPEDQVTDRSER 191

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 192 FLAAELIR 199


>gi|88608771|ref|YP_506823.1| GTP-binding protein Era [Neorickettsia sennetsu str. Miyayama]
 gi|88600940|gb|ABD46408.1| GTP-binding protein Era [Neorickettsia sennetsu str. Miyayama]
          Length = 308

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 18/157 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G+SN GKS+L NAL    ++ VT    TTR  +      +   +   DT GI    
Sbjct: 25  VSLIGNSNVGKSTLLNALIGSKISAVTHKVQTTRTRIRGIYTKDDVQLVFVDTPGIFIPR 84

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFPKNIDFIFIGTKSDLYSTYT 336
             +E+  +K  +      D+   + +      +S K+I    N   + +  K DL     
Sbjct: 85  CQLERVIVKNAWRAFAGTDIFCFIIDPRRPISDSTKDILRKANGKLVLVINKIDLVEKPR 144

Query: 337 E-------------EYDHLISSFTGEGLEELINKIKS 360
                         E   +IS+  G G+ +L+N +  
Sbjct: 145 LLEVAQELNSLGHFEKTFMISALKGNGVADLMNYLLK 181


>gi|70924024|ref|XP_734927.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56508121|emb|CAH85879.1| hypothetical protein PC301733.00.0 [Plasmodium chabaudi chabaudi]
          Length = 218

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 79/194 (40%), Gaps = 25/194 (12%)

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI-----VIL 225
           +I+A   +    D     S    N +  + ++   +I + K+ E+     +        +
Sbjct: 17  YIKAQNFWELGFDTPFPCSGIHGNGLSEILDECIKYIKKVKINELEEEENEENTINISFI 76

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL--DLEGYLVKISDTAGIRETDD- 282
           G  N GKSS+ N +   +  IV+ I GTT D + + +    +  + ++ DTAGI++    
Sbjct: 77  GKPNTGKSSILNKILNCNRFIVSPIAGTTIDSIDVLVKGKDDKRMYRLIDTAGIQKRKKN 136

Query: 283 -------IVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIG 326
                    E     RT   ++ +D+ +L+          +IN  ++I   +N   I   
Sbjct: 137 VPFNEKTKFEYLLFNRTEKAIKRSDVCILVIDSFNGISSHDINIARKI-LEENKSCIICC 195

Query: 327 TKSDLYSTYTEEYD 340
            K DL     + ++
Sbjct: 196 NKWDLIYNKNDIFN 209


>gi|291526958|emb|CBK92544.1| iron-only hydrogenase maturation protein HydF [Eubacterium rectale
           M104/1]
          Length = 438

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G +N+GKSSL NA+ K++V+IV D+ GTT D +   +++       I DTAG
Sbjct: 11  NRLHIGIYGKTNSGKSSLINAVTKQEVSIVADVAGTTTDPVYKSMEIHPLGPCVIIDTAG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
             +  ++ E+  +++T L  E  D+ +++ +I   + I+  K         K +   +  
Sbjct: 71  FDDDSELGERR-VEKTHLAAEKTDIAVVVLDI--AEVIAAKKAGVPFKKAFKDEAEWSLL 127

Query: 337 EEYDHLISSFTGEGLEELI 355
               H    F    ++E++
Sbjct: 128 FAKKHTPVVFALNKIDEIL 146


>gi|118602618|ref|YP_903833.1| GTP-binding protein Era [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567557|gb|ABL02362.1| GTP-binding protein Era [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 308

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 79/210 (37%), Gaps = 24/210 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ I ++G  N GKS+L N L  + ++I +  P TTR  + +    + Y +   DT G
Sbjct: 18  KSGF-IAVVGRPNVGKSTLVNELIGQKLSITSHRPQTTRHRIHVIDTTDDYQMVFVDTPG 76

Query: 277 IRETD-DIVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFPK-----NIDFIFIGTK 328
           I   +   +     K     + N D+IL L E+   +K++    +         I    K
Sbjct: 77  IHMGNCKAINSYMNKAASSTIANVDVILWLTEVGKWTKEDSRVLEHITRIKTPVILCINK 136

Query: 329 SDLYSTYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            D      E                   +S+F    +  L   +   L  +         
Sbjct: 137 IDKLKYAKEVLPFLDKVSQKYQPTDLFPLSAFKKNDIHALRKLVLHYLPEQALIFDADYI 196

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           +++   + +S+ +R   M  L + +   D+
Sbjct: 197 TNRSEKFIVSEFIREKLMRHLKD-ELPYDL 225


>gi|16271988|ref|NP_438186.1| GTP-binding protein Era [Haemophilus influenzae Rd KW20]
 gi|68248564|ref|YP_247676.1| GTP-binding protein Era [Haemophilus influenzae 86-028NP]
 gi|145633430|ref|ZP_01789160.1| GTP-binding protein Era [Haemophilus influenzae 3655]
 gi|145636783|ref|ZP_01792449.1| GTP-binding protein Era [Haemophilus influenzae PittHH]
 gi|229846932|ref|ZP_04467038.1| GTP-binding protein Era [Haemophilus influenzae 7P49H1]
 gi|260580683|ref|ZP_05848510.1| GTP-binding protein Era [Haemophilus influenzae RdAW]
 gi|1169543|sp|P43728|ERA_HAEIN RecName: Full=GTPase Era
 gi|317374938|sp|A5UFI7|ERA_HAEIG RecName: Full=GTPase Era
 gi|1572957|gb|AAC21691.1| GTP-binding protein (era) [Haemophilus influenzae Rd KW20]
 gi|68056763|gb|AAX87016.1| GTP-binding protein era homolog [Haemophilus influenzae 86-028NP]
 gi|144985993|gb|EDJ92595.1| GTP-binding protein Era [Haemophilus influenzae 3655]
 gi|145270081|gb|EDK10018.1| GTP-binding protein Era [Haemophilus influenzae PittHH]
 gi|229810016|gb|EEP45736.1| GTP-binding protein Era [Haemophilus influenzae 7P49H1]
 gi|260092745|gb|EEW76681.1| GTP-binding protein Era [Haemophilus influenzae RdAW]
          Length = 302

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 13  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----------NIDFIFIG 326
              + +   +     + + DLI+ + +    N+  E+   K                 I 
Sbjct: 73  KRAINRLMNRAASSAIGDVDLIIFVVDGTHWNADDEMVLNKLRNAKAPVVLAINKVDNIK 132

Query: 327 TKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL    T+        +   IS+  G  + EL   ++  L       P    + +  
Sbjct: 133 NKDDLLPFITDLSSKFNFAHIVPISAQRGNNVHELEKIVRQSLREGVHHFPEDYVTDRSQ 192

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 193 RFMASEIIR 201


>gi|221217963|ref|ZP_03589430.1| GTP-binding protein Era [Borrelia burgdorferi 72a]
 gi|221192269|gb|EEE18489.1| GTP-binding protein Era [Borrelia burgdorferi 72a]
          Length = 290

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+   ILG  + GKS+L N++    ++I++ IP TTR+ +      +   +   DT 
Sbjct: 1   MKSGF-AAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNNIKGIFTDDRGQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGT 327
           G   +        +K     +   +LIL + +I  K         EI     I F+ I  
Sbjct: 60  GFHLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILN 119

Query: 328 KSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL +T  +E                 IS+      EEL NKI    S      P    
Sbjct: 120 KIDLENTKIKEITQFLKEKGIEDSNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYY 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +   + +S+ +R   + +L E+
Sbjct: 180 TDQEINFRISEIIREKAIENLKEE 203


>gi|161525339|ref|YP_001580351.1| GTP-binding protein Era [Burkholderia multivorans ATCC 17616]
 gi|189349924|ref|YP_001945552.1| GTP-binding protein Era [Burkholderia multivorans ATCC 17616]
 gi|221201352|ref|ZP_03574391.1| GTP-binding protein Era [Burkholderia multivorans CGD2M]
 gi|221208832|ref|ZP_03581830.1| GTP-binding protein Era [Burkholderia multivorans CGD2]
 gi|221214087|ref|ZP_03587060.1| GTP-binding protein Era [Burkholderia multivorans CGD1]
 gi|160342768|gb|ABX15854.1| GTP-binding protein Era [Burkholderia multivorans ATCC 17616]
 gi|189333946|dbj|BAG43016.1| GTP-binding protein [Burkholderia multivorans ATCC 17616]
 gi|221166264|gb|EED98737.1| GTP-binding protein Era [Burkholderia multivorans CGD1]
 gi|221171288|gb|EEE03737.1| GTP-binding protein Era [Burkholderia multivorans CGD2]
 gi|221178620|gb|EEE11028.1| GTP-binding protein Era [Burkholderia multivorans CGD2M]
          Length = 299

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T     E       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTTEDAQYIFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P  +  + I  K D  + 
Sbjct: 74  STALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPGVPTLLIANKLDRVND 133

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            T  Y  +               S+   E ++ L+  IK  L            + +   
Sbjct: 134 KTTLYPFMQQVSALREFAEIVPLSAKHPEDIQRLLETIKPYLPEGEPIYGEDDLTDRSAR 193

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 194 FLAAEILR 201


>gi|94429026|gb|ABF18942.1| GTP-binding protein [uncultured bacterium pFosLip]
          Length = 249

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 84/228 (36%), Gaps = 28/228 (12%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLV 269
           +   +      + ++G++NAGKS+LFNAL + DV  V D    T D     L+L +G  +
Sbjct: 3   RQNRVRAEVPTVALVGYTNAGKSTLFNALTQADV-YVEDKLFATLDPTVRRLELPDGREI 61

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF----- 324
            ++DT G             + T  E   ADLIL L + +        + ++ +      
Sbjct: 62  VLADTVGFVRDLPHELIAAFRSTLQEAREADLILHLIDASDGSRWQRVRQVNAVLKELDA 121

Query: 325 -------IGTKSDLYS--------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                  +  K D+           + E     +S+ TGEG+  L+  I   L  +    
Sbjct: 122 DRVPQIRVYNKIDMLDRRPRVANNRHGEGRAVWLSAKTGEGVPFLLEAISERLRPQTVHG 181

Query: 370 PFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
              + P+  R    L +    L   +  +           L +A   L
Sbjct: 182 TIHLAPTQARQRAKLFEAGAVLSEETCEDGG-----WTIELEMAERDL 224


>gi|54295993|ref|YP_122362.1| hypothetical protein lpp0010 [Legionella pneumophila str. Paris]
 gi|53749778|emb|CAH11158.1| hypothetical protein lpp0010 [Legionella pneumophila str. Paris]
          Length = 414

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 102/288 (35%), Gaps = 23/288 (7%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +E + 
Sbjct: 114 RARTFEGKLQVELAQLQHLSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRERIR 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     Q +      +   + ++G++NAGKS+LFN L  +    V D    T
Sbjct: 173 YINKRLEKVRCSRDQNRQARRKASMPTVSLVGYTNAGKSTLFNVLTGEH-TYVADQLFAT 231

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     L+L G     ++DT G          E  + T  E + ADL+L + +I+    
Sbjct: 232 LDPTMRKLELPGSSAAILADTVGFIRDLPHHLVEAFRATLEETQQADLLLHVIDISDPNW 291

Query: 313 -----------EISFPKNIDFIFIGTKSDLYSTYTEEYDH-------LISSFTGEGLEEL 354
                      +     NI  I +  K DL   +  + D+        +S+ TG GL+ L
Sbjct: 292 RETVFEVQKVLDELKVSNIPVIQVFNKIDLQEGWQPKIDYTEDSCKVWLSATTGAGLDLL 351

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
              I + L          I   +  L      +  +   S++E    L
Sbjct: 352 KEAIATQLHGMILIEDIVIKPDQAKLRAQLYQLGAVLKESVDENGDWL 399


>gi|325292415|ref|YP_004278279.1| GTP-binding protein Era [Agrobacterium sp. H13-3]
 gi|325060268|gb|ADY63959.1| GTP-binding protein Era [Agrobacterium sp. H13-3]
          Length = 316

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 84/203 (41%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G +NAGKS+L N L    V+IV+    TTR V+      +   +   DT G
Sbjct: 22  RSGF-VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAVMRGIAIHKNAQIVFMDTPG 80

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFI--GTK 328
           I +    +++  +   +   ++ADLILLL +       +++  +   K++    I    K
Sbjct: 81  IFKPRRRLDRAMVTSAWGGAKDADLILLLIDSERGLKGDAEAILEGLKDVPQKKILCLNK 140

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D                  T +   +IS+  G G E+L++ +   L       P    S
Sbjct: 141 IDQVKREDLLKLAAAANEHVTFDRTFMISATNGSGCEDLMDYLVDTLPEGPWYYPEDQIS 200

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+++
Sbjct: 201 DLPMRQLAAEITREKLFLRLHQE 223


>gi|301168614|emb|CBW28204.1| membrane-associated, 16S rRNA-binding GTPase [Haemophilus
           influenzae 10810]
          Length = 302

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 13  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----------NIDFIFIG 326
              + +   +     + + DLI+ + +    N+  E+   K                 I 
Sbjct: 73  KRAINRLMNRAASSAIGDVDLIIFVVDGTHWNADDEMVLNKLRNAKAPVVLAINKVDNIK 132

Query: 327 TKSDLY-------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL        S +   +   IS+  G  + EL   ++  L       P    + +  
Sbjct: 133 NKDDLLPFITGLSSKFNFAHIVPISAQRGNNVHELEKIVRQSLREGVHHFPEDYVTDRSQ 192

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 193 RFMASEIIR 201


>gi|291526461|emb|CBK92048.1| iron-only hydrogenase maturation protein HydF [Eubacterium rectale
           DSM 17629]
          Length = 458

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G +N+GKSSL NA+ K++V+IV D+ GTT D +   +++       I DTAG
Sbjct: 31  NRLHIGIYGKTNSGKSSLINAVTKQEVSIVADVAGTTTDPVYKPMEIHPLGPCVIIDTAG 90

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
             +  ++ E+  +++T L  E  D+ +++ +I
Sbjct: 91  FDDDSELGERR-VEKTHLAAEKTDIAVVVLDI 121


>gi|194366746|ref|YP_002029356.1| GTP-binding protein Era [Stenotrophomonas maltophilia R551-3]
 gi|226741238|sp|B4SRK9|ERA_STRM5 RecName: Full=GTPase Era
 gi|194349550|gb|ACF52673.1| GTP-binding protein Era [Stenotrophomonas maltophilia R551-3]
          Length = 298

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NAL    V+IV++ P TTR  L          + + DT G+ +  
Sbjct: 12  VAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATYPEGQLVLVDTPGLHKVQ 71

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSD--- 330
                  + R     +E  D  LL+ E     E       +     I  + +  K D   
Sbjct: 72  KRAMNRVMNRAARGSLEGVDAGLLVIEAGRWDEEDSLAFNVLRDAGIPVVLVVNKIDRLK 131

Query: 331 -------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                       T   D    H IS+    GLE L+  + ++L            + +  
Sbjct: 132 DKGALLPFLQEVTAGRDFSSVHPISAQKRNGLEALVRDVLALLPEAPPMFGEDEITDRSQ 191

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +   + VR   M  L E+
Sbjct: 192 RFLAGELVREQLMRQLGEE 210


>gi|224500518|ref|ZP_03668867.1| GTP-binding protein Era [Listeria monocytogenes Finland 1988]
          Length = 299

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   +  
Sbjct: 1   MSEPFKSGF-VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFI 323
            DT GI +    +    +K      +  DLI  + + +       +  I   KN      
Sbjct: 60  IDTPGIHKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVF 119

Query: 324 FIGTKSDLYS 333
            +  K DL +
Sbjct: 120 LLINKIDLIA 129


>gi|325299809|ref|YP_004259726.1| GTP-binding protein Era-like-protein [Bacteroides salanitronis DSM
           18170]
 gi|324319362|gb|ADY37253.1| GTP-binding protein Era-like-protein [Bacteroides salanitronis DSM
           18170]
          Length = 293

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 70/163 (42%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + V+I T    TTR  +   L+ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNLLVGERVSIATFKAQTTRHRIMGILNTDDMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + +   K        E     +I  + +  K DL + 
Sbjct: 67  YKLQESMLNFSESALVDADVLLYVTDTIEKPDKNKEFVEKVRNLDIPVLLLVNKIDLTNQ 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                          +     IS+     ++ ++ +I  +L +
Sbjct: 127 DNLVKLVEEWHGLLPDAEIIPISAKAKFNVDAVMKRITELLPD 169


>gi|315186271|gb|EFU20032.1| small GTP-binding protein [Spirochaeta thermophila DSM 6578]
          Length = 411

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 16/162 (9%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           +    +IV+ G  NAGKSSL NA+ +K+VAIV+D PGTT D +T   +L G   V  +DT
Sbjct: 6   LAERTRIVLFGLRNAGKSSLMNAIFEKEVAIVSDQPGTTTDPVTRAYELIGAGPVAFTDT 65

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIG 326
           AG+ +   +     I+R    +  AD+ LL+  +            E    + I ++   
Sbjct: 66  AGLDDEGPLGSLR-IERAKKALAQADIALLVTPLTRPPHPLEDRLLEEVRRRGIPYLVAA 124

Query: 327 TKSDLYSTYTEEYD------HLISSFTGEGLEELINKIKSIL 362
           + +D      +E          ++S + EG+  L +++  ++
Sbjct: 125 SFADQAPDPRKEAWLASLPHVRVASPSREGIRTLTSRLVHLV 166


>gi|194246696|ref|YP_002004335.1| GTP-binding protein Era [Candidatus Phytoplasma mali]
 gi|193807053|emb|CAP18489.1| Glycyl-tRNA synthetase [Candidatus Phytoplasma mali]
          Length = 293

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ILG  N GKS+L N L K+ ++IV+D P  T + +    +     +   DT G     
Sbjct: 8   ITILGRPNVGKSTLINVLVKQKISIVSDKPNVTINKIIGVCNDIDSQLVFIDTPGFNNRK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLK-EINSKKEISFPKNI-----DFIFIGTKSDLYSTY 335
            ++ K   + +   +   D+IL L  +I +  E     NI       I +  K D +   
Sbjct: 68  FLLSKRMDESSLKSIYGVDVILFLITDILNSSEKKILSNIQKHKKPIIIVINKIDNFKNK 127

Query: 336 TE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           ++              +    IS+   + L  L N I S L    K  P  + + ++   
Sbjct: 128 SQIDKIILDCLKYFKFDDIIPISAINSQNLLPLKNSILSYLKEGPKYYPSDMVTDQKKDR 187

Query: 382 HLSQTVR 388
            +++ VR
Sbjct: 188 LIAELVR 194


>gi|304310580|ref|YP_003810178.1| Small GTP-binding protein Era [gamma proteobacterium HdN1]
 gi|301796313|emb|CBL44521.1| Small GTP-binding protein Era [gamma proteobacterium HdN1]
          Length = 305

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 77/210 (36%), Gaps = 24/210 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ I I+G  N GKS+L N +  + ++I +  P TTR  +              DT G
Sbjct: 13  RCGF-IAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRILGIKTDGPVQAIYVDTPG 71

Query: 277 I-RETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTK 328
           I R  +  + +   +     V++ DL+L + +        E    K    +   I +  K
Sbjct: 72  IHRGGEKALNRFMNRSALESVKDVDLVLFVVDSLKWTEGDEWVLAKLARVSAPVILVVNK 131

Query: 329 SD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            D              L           +S+  G+ L EL +++   L  +         
Sbjct: 132 VDQVEDKKRLLPVLESLGQKRDFAAIFPLSALRGKNLAELESEVGKHLPEREFLFDPEQI 191

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           + +   +  ++ VR   M  L  ++   D+
Sbjct: 192 TDRSQRFIAAEIVREKIMRQLG-QEIPYDL 220


>gi|198283250|ref|YP_002219571.1| GTP-binding protein Era [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666809|ref|YP_002425833.1| GTP-binding protein Era [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247771|gb|ACH83364.1| GTP-binding protein Era [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519022|gb|ACK79608.1| GTP-binding protein Era [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 304

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 22/224 (9%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
            I  G   E  R+GY + +LG  N GKS+L N L  + ++I    P TTRD +   L   
Sbjct: 3   EIKSGAPDEGYRSGY-VALLGRPNVGKSTLLNHLVGQKISITAPRPQTTRDQILGILTRP 61

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPK-- 318
              +   DT G+      + +  ++ T   +E+ADL +L+ E      +  + + + +  
Sbjct: 62  DGQLLFLDTPGVHSGYRSLNRHLLRATRGALESADLGVLVVEALLWTHDDAEALRWLQRA 121

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI----------NKIKSILSNKFKK 368
            I  + +  K D  ++    + +L +         +I           ++  +L      
Sbjct: 122 GIPLVAVVNKVDRVASKARLFPYLQALAERGEFAAIIPLSARRAPDVERLADVLVPLLPP 181

Query: 369 LPFSIPSHK---RHLYHLSQTVRYLEMASLNEKDCGLD-IIAEN 408
            P + P  +   R+L  ++  +   ++      +   D  +A  
Sbjct: 182 APAAFPEDQVTDRNLRFMAAEIIREQIFRQLGAELPYDTAVAIE 225


>gi|144575090|gb|AAZ43799.2| GTP-binding protein ERA [Mycoplasma synoviae 53]
          Length = 295

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 72/170 (42%), Gaps = 14/170 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKSSL N +   +++IVT +  TTR+ +T         +   DT GI +  
Sbjct: 11  VTIVGRPNAGKSSLLNTILGYNLSIVTPVAQTTRNQITGVYTEGNLQIIFIDTPGIHKPK 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDFIFIGTKSDLYSTYTEE 338
            +  +   K  F    + DL+L L   +    K ++   +      +  K  + +   + 
Sbjct: 71  SLFGEHLNKEAFDTFSSVDLVLFLSPADEEVLKGDLFILEK--LKNVKNKVAVITKLDKV 128

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
                        + L +K+ S++ + FK++  +   ++  +  L Q + 
Sbjct: 129 NSRP---------QLLKDKVNSLMEHDFKEIVATSIENEESIDSLVQLIE 169


>gi|46578469|ref|YP_009277.1| GTP-binding protein Era [Desulfovibrio vulgaris str. Hildenborough]
 gi|120603947|ref|YP_968347.1| GTP-binding protein Era [Desulfovibrio vulgaris DP4]
 gi|81567485|sp|Q72G11|ERA_DESVH RecName: Full=GTPase Era
 gi|189037267|sp|A1VHK4|ERA_DESVV RecName: Full=GTPase Era
 gi|46447880|gb|AAS94536.1| GTP-binding protein Era [Desulfovibrio vulgaris str. Hildenborough]
 gi|120564176|gb|ABM29920.1| GTP-binding protein Era [Desulfovibrio vulgaris DP4]
 gi|311232397|gb|ADP85251.1| GTP-binding protein Era [Desulfovibrio vulgaris RCH1]
          Length = 308

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 28/180 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + ++G  NAGKS+L NAL  + VAIVT  P TTR+ +   L  +   V   DT GI + 
Sbjct: 10  WVALIGPPNAGKSTLLNALIGQKVAIVTSKPQTTRNQIVGILSRKDAQVVFMDTPGIHQL 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--------------SKKEISFPKNIDFIFIG 326
              + K  ++  +  +  AD ++++ + +                 E    +    + + 
Sbjct: 70  RGRLNKMLLQTAWQSMNAADALIVMLDGDLYIRKPDLLDRDIAPLVEPIAAETRPVVVVV 129

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            K DL+                + +      S+   +G++ L+  I   +       P  
Sbjct: 130 NKIDLFRDKSKMLPLLERLSAMWPKAEVFPASALNKDGMDHLLRLIVGYMPEGPALYPED 189


>gi|302841942|ref|XP_002952515.1| Era-like protein [Volvox carteri f. nagariensis]
 gi|300262154|gb|EFJ46362.1| Era-like protein [Volvox carteri f. nagariensis]
          Length = 453

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 23/194 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + ++G  NAGKS+L NAL  + ++IVT  P TTR  +      + Y + + DT G
Sbjct: 156 RSGY-VAVIGKPNAGKSTLINALVGQKLSIVTYKPQTTRHRIMGIASDKHYQMILFDTPG 214

Query: 277 IRETDDIV-EKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGT 327
           + E      E+  +      +++++ I+ + +   K + +                 +  
Sbjct: 215 VIERKRTKLEERMMAAVVHSIKDSEAIVAVVDSADKPKEALAMFQPGESWNGPPMAVLLN 274

Query: 328 KSDLYST---------YTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K+DL +          YTE    E   + S+   +GLE L     S L          I 
Sbjct: 275 KADLLTEDEIQELKTWYTENCRAEQVFVGSAERRDGLEALREWAVSRLPEGPTLYSKKIV 334

Query: 375 SHKRHLYHLSQTVR 388
           S +   + +++ +R
Sbjct: 335 SEQPERFFVAECIR 348


>gi|148244712|ref|YP_001219406.1| GTP-binding protein Era [Candidatus Vesicomyosocius okutanii HA]
 gi|146326539|dbj|BAF61682.1| GTP-binding protein Era [Candidatus Vesicomyosocius okutanii HA]
          Length = 316

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 79/205 (38%), Gaps = 23/205 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N L  + ++I +  P TTR  +      + Y +   DT GI   +
Sbjct: 30  IGVVGRPNVGKSTLINELIGRKLSITSHRPQTTRHRIHAIDTTDNYQMVFVDTPGIHMGN 89

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFPK-----NIDFIFIGTKSD--- 330
              +     +   L + + D+IL L E+   +K+++   +     ++  I    K D   
Sbjct: 90  YKAINSYMNRVASLAIMDVDVILWLIEVGKWTKEDLRVLEHITQIDVPVILCINKIDKLK 149

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      ++  Y       +S+F    +  L   +   L  +         + +  
Sbjct: 150 SPQEVLPFLNKIFQKYQPTDLFPLSAFKKNDICVLRELVLQYLPKQTLIFDADYITDRSE 209

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI 404
            + +++ +R   M  L + +   D+
Sbjct: 210 KFIVAEFIREKLMRHLKD-ELPYDL 233


>gi|145635203|ref|ZP_01790907.1| GTP-binding protein Era [Haemophilus influenzae PittAA]
 gi|229845359|ref|ZP_04465490.1| GTP-binding protein Era [Haemophilus influenzae 6P18H1]
 gi|260582073|ref|ZP_05849868.1| GTP-binding protein Era [Haemophilus influenzae NT127]
 gi|145267482|gb|EDK07482.1| GTP-binding protein Era [Haemophilus influenzae PittAA]
 gi|229811667|gb|EEP47365.1| GTP-binding protein Era [Haemophilus influenzae 6P18H1]
 gi|260094963|gb|EEW78856.1| GTP-binding protein Era [Haemophilus influenzae NT127]
          Length = 302

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 13  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----------NIDFIFIG 326
              + +   +     + + DLI+ + +    N+  E+   K                 I 
Sbjct: 73  KRAINRLMNRAASSAIGDVDLIIFVVDGTHWNADDEMVLNKLRNAKAPVVLAINKVDNIK 132

Query: 327 TKSDLY-------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL        S +   +   IS+  G  + EL   ++  L       P    + +  
Sbjct: 133 NKDDLLPFITGLSSKFNFAHIVPISAQRGNNVHELEKIVRQSLREGVHHFPEDYVTDRSQ 192

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 193 RFMASEIIR 201


>gi|29349243|ref|NP_812746.1| GTP-binding protein Era [Bacteroides thetaiotaomicron VPI-5482]
 gi|253573090|ref|ZP_04850481.1| GTP-binding protein Era [Bacteroides sp. 1_1_6]
 gi|298384784|ref|ZP_06994343.1| GTP-binding protein Era [Bacteroides sp. 1_1_14]
 gi|29341151|gb|AAO78940.1| putative GTP-binding protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251837313|gb|EES65413.1| GTP-binding protein Era [Bacteroides sp. 1_1_6]
 gi|298261928|gb|EFI04793.1| GTP-binding protein Era [Bacteroides sp. 1_1_14]
          Length = 293

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 71/163 (43%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I T    TTR  +    + +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++    + +           +  + +  K DL   
Sbjct: 67  YKLQESMLNFSTSALTDADVLLYVTDVVETPDKNNEFMGKVRQMTVPVLLLINKIDLTDQ 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                          +     IS+ +   ++ ++ +I+ +L +
Sbjct: 127 EKLIKLVEEWKELLPQAEIIPISAASKFNVDYVMKRIQELLPD 169


>gi|228472569|ref|ZP_04057329.1| GTP-binding protein Era [Capnocytophaga gingivalis ATCC 33624]
 gi|228275982|gb|EEK14738.1| GTP-binding protein Era [Capnocytophaga gingivalis ATCC 33624]
          Length = 293

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I+T    TTR  +   +  + + V  SDT GI +  
Sbjct: 8   VNIIGNPNVGKSTLLNALVGERLSIITSKAQTTRHRIFGIVSGDDFQVVFSDTPGIIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--KEISFPKNI-----DFIFIGTKSDLYST 334
             ++   +       E+AD+++ + EI  K  K+  F + I       + +  K D    
Sbjct: 68  YQLQNSMMDFVKDAFEDADILIYMVEIGEKELKDADFFRKINQAKVPVLVLINKIDRSDE 127

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                          +   + IS+     +  L ++I  +L       P    + K   +
Sbjct: 128 ETVKQAVAYWQQQVPKGEIYAISALENFNVAPLFHRILELLPVSPAFYPKDQLTDKPERF 187

Query: 382 HLSQTVR 388
            +++T+R
Sbjct: 188 FVNETIR 194


>gi|225569437|ref|ZP_03778462.1| hypothetical protein CLOHYLEM_05522 [Clostridium hylemonae DSM
           15053]
 gi|225161645|gb|EEG74264.1| hypothetical protein CLOHYLEM_05522 [Clostridium hylemonae DSM
           15053]
          Length = 404

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 21/168 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G  NAGKSS+ NAL  +D+AIV+DI GTT D +   ++L     V + DT G
Sbjct: 10  ERIHIGIFGKRNAGKSSVINALTGQDLAIVSDIKGTTTDPVLKAMELLPLGPVVMIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTK 328
           + +  ++     +++ +  +   D+ +L+ +     ++ + +       K +  + +  K
Sbjct: 70  LDDEGELGTLR-VQKAYQILNKTDIAVLVVDGTVGMTEADHAILKRIKEKKLPSVVVLNK 128

Query: 329 SDL-----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           +D+                ++Y   +S+     + EL   I  ++   
Sbjct: 129 ADIAVPDRYKDAASLGLAPDDYFMWVSASDNSNIYELKELIARLVPAD 176


>gi|148358150|ref|YP_001249357.1| GTP binding protein HflX [Legionella pneumophila str. Corby]
 gi|296105508|ref|YP_003617208.1| GTPase [Legionella pneumophila 2300/99 Alcoy]
 gi|148279923|gb|ABQ54011.1| GTP binding protein HflX [Legionella pneumophila str. Corby]
 gi|295647409|gb|ADG23256.1| GTPase [Legionella pneumophila 2300/99 Alcoy]
          Length = 414

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 102/288 (35%), Gaps = 23/288 (7%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +E + 
Sbjct: 114 RARTFEGKLQVELAQLQHLSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRERIR 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     Q +      +   + ++G++NAGKS+LFN L  +    V D    T
Sbjct: 173 YINKRLEKVRCSRDQNRQARRKASMPTVSLVGYTNAGKSTLFNVLTGEH-TYVADQLFAT 231

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     L+L G     ++DT G          E  + T  E + ADL+L + +I+    
Sbjct: 232 LDPTMRKLELPGSSAAILADTVGFIRDLPHHLVEAFRATLEETQQADLLLHVIDISDPNW 291

Query: 313 -----------EISFPKNIDFIFIGTKSDLYSTYTEEYDH-------LISSFTGEGLEEL 354
                      +     NI  I +  K DL   +  + D+        +S+ TG GL+ L
Sbjct: 292 RETVFEVQKVLDELKVSNIPVIQVFNKIDLQEGWQPKIDYTEDACKVWLSATTGAGLDLL 351

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
              I + L          I   +  L      +  +   S++E    L
Sbjct: 352 KEAIATQLHGMILIEDIVIKPDQAKLRAQLYQLGAVLKESVDENGDWL 399


>gi|297796713|ref|XP_002866241.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312076|gb|EFH42500.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 541

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 99/266 (37%), Gaps = 24/266 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++++  M  +L  L   W          ++      ++ +V     +  +  
Sbjct: 229 AATHEAALQVALAQMEYQLPRLTRMWTHLERQSGGQVKGM--GEKQIEVDKRILRTQIGV 286

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +      +  H  Q +   +      + ++G++NAGKS+L N L   +V +  +    T 
Sbjct: 287 LKKELESVRKHRKQYRSRRVAIPVPVVSLVGYTNAGKSTLLNQLTGANV-LAENRLFATL 345

Query: 256 DVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SK 311
           D  T  + +  G    ++DT G  +          + T  E+  + L++ + +I+   ++
Sbjct: 346 DPTTRRVQMQNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEIAESSLLVHVVDISHPLAE 405

Query: 312 KEISFPKN---------IDFIFIGTKSDLYS--------TYTEEYDHLISSFTGEGLEEL 354
           ++I   +          I  + +  K D                    IS+ TGEGL++ 
Sbjct: 406 QQIEAVEKVMSELDVSSIPKLVVWNKVDRVDDPQKVKLEAEKSGDTICISALTGEGLDDF 465

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHL 380
            N +   L +    +   +P  K  L
Sbjct: 466 CNAVHEKLKDSMVWVEALLPFDKGDL 491


>gi|292490850|ref|YP_003526289.1| GTP-binding protein Era [Nitrosococcus halophilus Nc4]
 gi|291579445|gb|ADE13902.1| GTP-binding protein Era [Nitrosococcus halophilus Nc4]
          Length = 303

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N +  + ++I    P TTR  +              DT G+++ +
Sbjct: 15  VAIIGRPNVGKSSLLNCILGQKISITARRPQTTRHRILGIKTSPDAQAIYVDTPGLQDKE 74

Query: 282 DIVEKEGIKR-TFLEVENADLILLLKEI----NSKKEI---SFPKNIDFIFIGTKSD--- 330
             +    + R     +E+ DLIL + E        + I      + +  + +  K D   
Sbjct: 75  RRLMNRYLNRAADSAIEDVDLILFIVEAYRFTEEDERILQRLRRRGVPIVLVLNKVDRVA 134

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L           +S++ G+ +  L  K+  +L       P    + +  
Sbjct: 135 DKKTLLPIMEQLSKKMEFAAIVPVSAWKGDNVAVLEKKVAGLLPEGPMIYPEDQVTDRSE 194

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 195 RFLAAELIR 203


>gi|299139980|ref|ZP_07033150.1| GTP-binding protein Era [Acidobacterium sp. MP5ACTX8]
 gi|298597980|gb|EFI54148.1| GTP-binding protein Era [Acidobacterium sp. MP5ACTX8]
          Length = 384

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 93/236 (39%), Gaps = 63/236 (26%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL---------E 265
            +R+G+ I I+G  NAGKS+L NAL  + +AIVT  P TTR  +   L+L          
Sbjct: 2   ALRSGF-ISIIGRPNAGKSTLLNALLGQKLAIVTHKPQTTRTRIQGVLELPVRKKTKTDG 60

Query: 266 GYL---VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------- 311
           G     + + DT G+ + +  ++K  ++     +E+ D++  + ++  +           
Sbjct: 61  GRPASQIVLVDTPGVHKPETQLDKRMMQEVHDALESRDVVWFIVDVTHRLPEPKKLLTSE 120

Query: 312 --------------------------KEISFPKNIDFIFIGTKSD---------LYSTYT 336
                                      ++    +   I +  K D         L + +T
Sbjct: 121 EFAEARKIRTLGQHRRALSKAEDDFALQLVKKLDCPVILVLNKIDALPKSALLPLIAHWT 180

Query: 337 EEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             ++      IS+   +GLE L++K   +L    +  P    + +   + +++ +R
Sbjct: 181 SLHEFADVIPISAKKNDGLELLLDKSARLLPEGQRYFPKDQLTDQPERFLVAELIR 236


>gi|288817738|ref|YP_003432085.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
 gi|288787137|dbj|BAI68884.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
 gi|308751337|gb|ADO44820.1| GTP-binding proten HflX [Hydrogenobacter thermophilus TK-6]
          Length = 370

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 33/218 (15%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG-------YKIVILGHSNAGKSS 234
           E       + +   I  ++ ++     Q K     R+         K+ ++G++N GKSS
Sbjct: 152 EQEAEVRRRWIKKRIQQIREELEEVKKQRKEQRKRRDRWHSDIRIVKVALVGYTNVGKSS 211

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           L   L  ++   V D+P  T D  T D+ L +   V I+DT G          E  K T 
Sbjct: 212 LMRLLTGRE-TFVADMPFATLDTKTSDVYLSKDIKVLITDTVGFIRDLPHELIESFKATL 270

Query: 294 LEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLY--------- 332
            E++ AD++L + +I+ KK +   K                +++  K+D           
Sbjct: 271 EELQEADILLHVVDISDKKWLEKIKVVRKVLAELKVDEKPTLYVFNKADKLVESEQDIEL 330

Query: 333 ---STYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                +  E   +IS+  G G+++L++ IK ++    +
Sbjct: 331 LTEPAFLGEKSVVISAQKGWGIKKLLSTIKEMVEEFIE 368


>gi|158266422|gb|ABW24770.1| ThdF [Proteus mirabilis]
          Length = 53

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           HL Q  + L  A         +++AE LRLA  +L +ITG    + LL  IFS FCIGK
Sbjct: 1   HLQQGYQQLVYAK------SGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 53


>gi|297181617|gb|ADI17801.1| GTPase [uncultured Sphingobacteriales bacterium HF0130_33B19]
          Length = 292

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 75/187 (40%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL    ++I+T    TTR  +   L+ + + +  SDT G+ +  
Sbjct: 8   VNIIGNPNVGKSTLMNALIGHKLSIITPKAQTTRHRILGILNEKDFQIVFSDTPGVIDPS 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK-------KEISFPKNIDFIFIGTKSDLY-- 332
             +++  +   +  + +AD+++ + EI  K        E     ++  + +  K DL   
Sbjct: 68  YKLQENMMNFVYSALHDADVLIYMIEIGEKGLKDAKLFEKLKTTDVPVLMLLNKIDLADQ 127

Query: 333 -----------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                      S         IS+     L+ +  K+  +L            + K   +
Sbjct: 128 DFVSQQMEIWNSKLPNADLLPISALNNFNLDVIKKKLVDMLPLSPPYFDKESITDKSERF 187

Query: 382 HLSQTVR 388
              + +R
Sbjct: 188 FTEEIIR 194


>gi|295677175|ref|YP_003605699.1| GTP-binding protein Era [Burkholderia sp. CCGE1002]
 gi|295437018|gb|ADG16188.1| GTP-binding protein Era [Burkholderia sp. CCGE1002]
          Length = 287

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 71/191 (37%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + V+I +    TTR  +T    LE       DT G +   
Sbjct: 2   VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGINTLEDAQYIFVDTPGFQTRH 61

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P  +  + I  K D  S 
Sbjct: 62  SGALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPAKVPTLLIANKLDRVSD 121

Query: 335 YTEEYDHLISSFTGEGLEELI-------NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
               +  +    T     E++       + IK +++     LP   P +        ++ 
Sbjct: 122 KDSLFPFMQQMSTLREFNEIVPLSAKNTDDIKRLMATIKPFLPEGEPIYGED-DLTDRSE 180

Query: 388 RYLEMASLNEK 398
           R+L    L EK
Sbjct: 181 RFLAAEILREK 191


>gi|254481405|ref|ZP_05094650.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2148]
 gi|214038568|gb|EEB79230.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2148]
          Length = 299

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + ++I +  P TTR  +          V   DT G+ + +
Sbjct: 11  VAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHQVLGIKTENDSQVIFVDTPGLHKAE 70

Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSDLYS 333
           +  + +   +     +++ DLIL L +  +  E             I  + +  K DL  
Sbjct: 71  EKAINRYMNRAASSAIKHVDLILFLIDRTAWTEEDQMVLEQVQRTRIPTLLVVNKVDLLE 130

Query: 334 TYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                             E    +S+     ++ L  +I   +       P    + +  
Sbjct: 131 DKNILLPHLQELADRGEFEAIVPVSALRQRNVDMLEQEILKYMPESEHFYPEDQITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  ++ VR
Sbjct: 191 RFLAAEIVR 199


>gi|289578198|ref|YP_003476825.1| GTP-binding proten HflX [Thermoanaerobacter italicus Ab9]
 gi|289527911|gb|ADD02263.1| GTP-binding proten HflX [Thermoanaerobacter italicus Ab9]
          Length = 413

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 17/253 (6%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E   ++ +  +   L  L G    +L+ +   I        + +      +  +  I   
Sbjct: 120 EGMLQVELAQLKYRLPRLVG-IGGQLSRLGGGIGTRGPGETKLETDRRHIQNRIKAIEKK 178

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             +I  H    +          + I+G++NAGKS+L NAL K +V  V D    T D   
Sbjct: 179 LEEIKRHRDLQRSRRKKNQVPVVAIVGYTNAGKSTLLNALTKAEV-YVEDKLFATLDPTA 237

Query: 260 IDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
             L L  G  V + DT G          E  K T  EV+ ADL+L + ++ S       K
Sbjct: 238 RRLILPSGREVILIDTVGFIRKLPHDLVEAFKSTLEEVKYADLLLHVIDVTSPDMEEKIK 297

Query: 319 ------------NIDFIFIGTKSDLYSTYTE--EYDHLISSFTGEGLEELINKIKSILSN 364
                       NI  I +  K DL     +  E +  IS+    G + L+  I+  +  
Sbjct: 298 VVERVLSDLGAINIPKINVFNKIDLLEVVLKGNEREVYISAKNKIGFDNLLEAIEREIFK 357

Query: 365 KFKKLPFSIPSHK 377
             + + F +P  K
Sbjct: 358 DVEVVNFLLPYDK 370


>gi|326504304|dbj|BAJ90984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 65/338 (19%), Positives = 127/338 (37%), Gaps = 38/338 (11%)

Query: 70  PSPESFTGE-DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEA 128
           P+P ++ G    AE       + V  +  E     +   A       ++F  G       
Sbjct: 181 PNPRTYIGSGKVAEI-----RSAVQALDAETIIFDDELSAGQLRNLDKSFGGGVRVCDRT 235

Query: 129 ESLADLIS---SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             + D+ +   +  E   ++++  M  +L  L   W          ++        E   
Sbjct: 236 ALILDIFNQRAATHEAALQVTLAQMEYQLPRLTKLWTHLERQSGGQVK-----GMGEKQI 290

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKK 242
               + +   I  L+ ++ S     KL    R    I    ++G++NAGKS+L N L   
Sbjct: 291 EVDKRILRTQISTLRKELESVRKHRKLYRNRRQSVPIPVVSLVGYTNAGKSTLLNRLTGA 350

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV +  D    T D  T  + ++ G    ++DT G  +    +     + T  E+  + +
Sbjct: 351 DV-LAEDKLFATLDPTTRRVLMKSGTEFLLTDTVGFIQKLPTMLVAAFRATLEEISESSI 409

Query: 302 ILLLKEIN---SKKEISFPKN---------IDFIFIGTKSD-------LYSTYTEEYDHL 342
           I+ L +I+   ++++I              +  + +  K D       +     ++    
Sbjct: 410 IVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDNTDNPLRVKEEAAKQGIIC 469

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           IS+  G+GLEEL N I++ L +    +   +P +K  L
Sbjct: 470 ISAMNGDGLEELCNAIQAKLKDSLVLIEAFVPYNKGDL 507


>gi|313888957|ref|ZP_07822617.1| ribosome biogenesis GTPase Era [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845130|gb|EFR32531.1| ribosome biogenesis GTPase Era [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 301

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 86/200 (43%), Gaps = 23/200 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NA+  + ++ ++  P TTR  +T     E   +   DT GI++  
Sbjct: 11  VSVIGRPNVGKSTLLNAIIGEKISAISSKPQTTRQNITFIHTDEDAQIIFLDTPGIQKPK 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPK----NIDFIFIGTKSD- 330
           + + +  +  +   +E++D+I  + + +       +  I   K     +  I +  K D 
Sbjct: 71  NKLGEFMLTESKEGIEDSDVITYIVDTSKKIGRAERSIIDILKEYKGKLPIILLINKVDT 130

Query: 331 --------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                   + S Y EE        IS+   +G++  +  +K  L       P  + + K 
Sbjct: 131 IRKDELLEIISMYAEEEIFDDIIPISAMKNDGVDIYLETLKKFLKPGPMYYPEDMITDKN 190

Query: 379 HLYHLSQTVRYLEMASLNEK 398
             + +++ +R   +  LNE+
Sbjct: 191 ERFIVAEIIREKGLIYLNEE 210


>gi|307267613|ref|ZP_07549083.1| GTP-binding proten HflX [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917370|gb|EFN47674.1| GTP-binding proten HflX [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 413

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 85/235 (36%), Gaps = 14/235 (5%)

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
                  +L+ +   I        + +      K  +  I     +I  H S  +     
Sbjct: 136 RLAGLGGQLSRLGGGIGTRGPGETKLETDRRHIKNRIKAIEKKLEEIERHRSLQRERRKK 195

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
                I I+G++NAGKS+L NAL   +V +   +  T        +   G  V + DT G
Sbjct: 196 NRIPVIAIVGYTNAGKSTLLNALTNAEVYVEDKLFATLDPTARRLVLSSGREVILIDTVG 255

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIF 324
                     E  K T  EV+ ADL+L + ++ S       K            N   I 
Sbjct: 256 FIRKLPHDLVEAFKSTLEEVKYADLLLHVIDVASPDMEEKIKVVEKVLSDLGAINTPKIN 315

Query: 325 IGTKSDLYSTYTE--EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +  K DL     +  E +  IS+    G ++L+  I+  +    + + F +P  K
Sbjct: 316 VFNKIDLLEVVPKGNEREVYISAKNKIGFDKLLQAIEREIFKDVEVVNFLLPYDK 370


>gi|294084099|ref|YP_003550857.1| GTP-binding protein Era [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663672|gb|ADE38773.1| GTP-binding protein Era [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 303

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 24/165 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L NA+  + V+IVT    TTR  +          +   DT GI    
Sbjct: 13  VALIGAPNAGKSTLMNAMVGQKVSIVTPKVQTTRSRVRGIAMQGTAQIIFVDTPGIFTPK 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF----------PKNIDFIFIGTKSDL 331
             +++  ++  +   E+ D++LLL +  +++EI                    +  K DL
Sbjct: 73  RRLDRAMVQAAWQGAEDGDVLLLLHDC-ARREIDQDTLNIIEKLKKSGRKASLVLNKIDL 131

Query: 332 YST-------------YTEEYDHLISSFTGEGLEELINKIKSILS 363
                           Y  E   ++S+ TG G+++L   +   + 
Sbjct: 132 PPQERLLERADAMSKLYDFERIFMVSAETGNGIDDLKTWLADHMP 176


>gi|189462215|ref|ZP_03011000.1| hypothetical protein BACCOP_02898 [Bacteroides coprocola DSM 17136]
 gi|189431068|gb|EDV00053.1| hypothetical protein BACCOP_02898 [Bacteroides coprocola DSM 17136]
          Length = 293

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 78/187 (41%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   L+ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNLLVGERISIATFKAQTTRHRIMGILNTDDMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDL--- 331
             +++  +  +   + +AD++L + +   K        E      +  + +  K DL   
Sbjct: 67  YKLQESMLNFSESALVDADVLLYVTDTIEKPDKNADFMEKVRRVKVPVLLLINKIDLTNQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                     +    E     IS+     ++ ++ +IK ++ +          + K   +
Sbjct: 127 EELVKLVEEWHEMLPEAEIIPISAKAKFNVDVVMKRIKELIPDSPPYFGKDQLTDKPARF 186

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 187 FVTEIIR 193


>gi|269960404|ref|ZP_06174777.1| GTP-binding protein [Vibrio harveyi 1DA3]
 gi|269834831|gb|EEZ88917.1| GTP-binding protein [Vibrio harveyi 1DA3]
          Length = 320

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 67/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 29  IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 88

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L+  L +        E+   K    N   +    K D   
Sbjct: 89  KRAINRLMNRAANSSLSDVNLVFFLVDGTHWTKDDEMVLTKLQKSNFPVVLCVNKVDNVQ 148

Query: 334 TYTEEYDHL--------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H+              IS+  G+ ++ L   ++  L       P    + +  
Sbjct: 149 DRNEVMMHMADMSKKMDFVDVVPISAKQGKNIDVLRKHVRDHLPEATHHFPEEYVTDRSQ 208

Query: 380 LYHLSQTVR 388
            +  S+ VR
Sbjct: 209 RFMASEIVR 217


>gi|283798881|ref|ZP_06348034.1| GTP-binding protein [Clostridium sp. M62/1]
 gi|291073338|gb|EFE10702.1| GTP-binding protein [Clostridium sp. M62/1]
          Length = 432

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 18/205 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I   G  NAGKSSL NA   +D+A+V+D+ GTT D +   ++L       I DT G
Sbjct: 10  ERVHISFFGCRNAGKSSLLNAFTGQDLAVVSDVKGTTTDPVKKSMELLPLGPAVIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTK 328
           I +   +  +  +++T   +   D+ +L+ +  +      +E++F    K + ++    K
Sbjct: 70  IDDEGSLGGRR-VRKTRQILNMTDIAVLVADSQTGIRKEDRELAFLFQEKEVPYVVAFNK 128

Query: 329 SDLYSTYTEEYDHLISSFTG--EGLEELI---NKIKSILSNKFKKLPFSIPSHKRHLYHL 383
            DL   +  +     ++ TG  EG+ E     N+  ++LS     LP S       +  L
Sbjct: 129 CDLTENHIPDIYKEETNKTGAKEGVPEDRGTENREAAVLSGAAAVLPVS-ARTGFGIEKL 187

Query: 384 SQTVRYLEMASLNEKDCGL--DIIA 406
            +T+ +++          L  D+++
Sbjct: 188 KETLAHIKTVEEGRDHVPLIGDLLS 212


>gi|297544479|ref|YP_003676781.1| GTP-binding proten HflX [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842254|gb|ADH60770.1| GTP-binding proten HflX [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 413

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 17/253 (6%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E   ++ +  +   L  L G    +L+ +   I        + +      +  +  I   
Sbjct: 120 EGMLQVELAQLKYRLPRLVG-MGGQLSRLGGGIGTRGPGETKLEADRRHIQNRIKAIEKK 178

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             +I  H    +          + I+G++NAGKS+L NAL K +V  V D    T D   
Sbjct: 179 LEEIKRHRDLQRSRRKKNQVPVVAIVGYTNAGKSTLLNALTKAEV-YVEDKLFATLDPTA 237

Query: 260 IDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
             L L  G  V + DT G          E  K T  EV+ ADL+L + ++ S       K
Sbjct: 238 RRLILPSGREVILIDTVGFIRKLPHDLVEAFKSTLEEVKYADLLLHVIDVTSPDMEEKIK 297

Query: 319 ------------NIDFIFIGTKSDLYSTYTE--EYDHLISSFTGEGLEELINKIKSILSN 364
                       NI  I +  K DL     +  E +  IS+    G + L+  I+  +  
Sbjct: 298 VVERVLSDLGAINIPKINVFNKIDLLEVVLKGNEREVYISAKNKIGFDNLLEAIEREIFK 357

Query: 365 KFKKLPFSIPSHK 377
             + + F +P  K
Sbjct: 358 DVEVVNFLLPYDK 370


>gi|241763851|ref|ZP_04761896.1| GTP-binding protein Era [Acidovorax delafieldii 2AN]
 gi|241366895|gb|EER61309.1| GTP-binding protein Era [Acidovorax delafieldii 2AN]
          Length = 334

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 7/141 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T     E       DT G +   
Sbjct: 44  IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGIRTREQTQFIFVDTPGFQTRH 103

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYST 334
                + + +T +  + + DLIL + E       ++K    F   I  + +  K D+   
Sbjct: 104 ATALNKSLNKTVMGAIGDVDLILFVVEAGSFTLADAKVLSLFKPGIPTLLVANKLDMVHR 163

Query: 335 YTEEYDHLISSFTGEGLEELI 355
             E    L S        E +
Sbjct: 164 RAEIAPWLKSMQERHPFAEFV 184


>gi|297801602|ref|XP_002868685.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297314521|gb|EFH44944.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 623

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 10/195 (5%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKND-ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
              ED       ++ +    L N+ +S  I + KL        ++ I+G  N GKS+L N
Sbjct: 283 PLLEDYMVEMLNDICSQDDALSNENLSDEIDESKL------PLQLAIVGKPNVGKSTLLN 336

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFL 294
           AL +++  +V    G TRD + +  + +G  V + DTAG     E D       I ++  
Sbjct: 337 ALLEEERVLVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLERTERDKGPASLSIMQSRK 396

Query: 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
            +  A +I L+ +     +         + I  ++           + +    G    E+
Sbjct: 397 SLMRAHVIALVLDAEEIIKAKCSMTHSEVVIARRAVEEGRGLVVIVNKMDRLRGRENSEM 456

Query: 355 INKIKSILSNKFKKL 369
             KIK  +  + + +
Sbjct: 457 YKKIKEAVPIEIQTV 471



 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 76/210 (36%), Gaps = 34/210 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIP--GTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++++G  N GKS+L+N       A+V + P    TRD+      L      + D+AGI  
Sbjct: 125 VMLMGRPNVGKSALYNR----REALVYNTPDDHVTRDIREGIAKLGDLRFNVLDSAGIET 180

Query: 280 TDDIVEKEGIKRTFLE--VENADLILLLKEINS----------KKEISFPKNIDFIFIGT 327
                   G         +      +L+ ++ +          K        I  I +  
Sbjct: 181 EVSSGTILGRTTAMTANVLARTQFAVLIIDVRAGLHPLDLEVGKWLRKHAPQIKPIVVMN 240

Query: 328 KSDLYSTYTE----------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI---- 373
           KS+   +  E               IS+ TG G+  L   ++ +L +   ++   I    
Sbjct: 241 KSESIGSLDEVASEALALGFGEPIAISAETGLGMTTLYEVLRPLLEDYMVEMLNDICSQD 300

Query: 374 --PSHKRHLYHLSQTVRYLEMASLNEKDCG 401
              S++     + ++   L++A + + + G
Sbjct: 301 DALSNENLSDEIDESKLPLQLAIVGKPNVG 330


>gi|126725455|ref|ZP_01741297.1| GTP-binding protein EngA [Rhodobacterales bacterium HTCC2150]
 gi|126704659|gb|EBA03750.1| GTP-binding protein EngA [Rhodobacterales bacterium HTCC2150]
          Length = 469

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 18/156 (11%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGI 289
           GKS+LFN L  K +A+V D PG TRD+      L      + DTAG+ E TD+ ++    
Sbjct: 2   GKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLGDIKFTVVDTAGLEEATDESLQGRMR 61

Query: 290 KRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST------- 334
             T   V  AD+ L + +  +          +I   K+   I    K +  +        
Sbjct: 62  ALTERAVGMADVCLFMIDARAGVLPADEVFADILRKKSAHVILAANKGEGKAADGGVLEA 121

Query: 335 --YTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
                     +S+  GEG+ +L++ +  I  +  K+
Sbjct: 122 YSLGLGEPIRLSAEHGEGMSDLLSILTPIADDFAKR 157



 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 100/279 (35%), Gaps = 39/279 (13%)

Query: 129 ESLADLISSETEMQRRLSMEG----MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
           E  AD++  ++      + +G      G +   Y   + +   + +        S+   +
Sbjct: 89  EVFADILRKKSAHVILAANKGEGKAADGGVLEAYSLGLGEPIRLSAEHG--EGMSDLLSI 146

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +        + ++ + +  G+         +I ++G  NAGKS+L N +  ++ 
Sbjct: 147 LTPIADDFAKRDQDHEAEVDADVEDGERVISRERPLQIAVVGRPNAGKSTLINQILGEER 206

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENA-- 299
            +     G TRD +++  D E   V++ DTAG+R+     D +EK  +      V+ A  
Sbjct: 207 LLTGPEAGITRDAISLAFDWEDTPVRMFDTAGMRKKAKVQDKIEKLSVSDGLRAVKFAEV 266

Query: 300 --------------DLILL-LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---- 340
                         DL +  L E   +  +      D      K D      EE+     
Sbjct: 267 VVVLLDVEIPFEQQDLRIADLAEREGRSVVIAVNKWDIE--DEKQDKLKELKEEFARLLP 324

Query: 341 -------HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                    +S+ TG G++ L   I         ++P +
Sbjct: 325 QLRGAPLITVSAKTGRGMDRLREAILWAHKVWNTRIPTA 363


>gi|163754016|ref|ZP_02161139.1| putative GTP-binding protein [Kordia algicida OT-1]
 gi|161326230|gb|EDP97556.1| putative GTP-binding protein [Kordia algicida OT-1]
          Length = 294

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +  
Sbjct: 8   VNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGEDFQMILSDTPGIIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLYST 334
             ++   +       E+AD+++ + EI     K E  F K     I  I +  K D  S 
Sbjct: 68  YELQSSMMDFVKSAFEDADVLIYMVEIGEKSLKDEAFFKKIINSKIPVILLLNKIDKSSQ 127

Query: 335 YTEE-------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
              E               + IS+     + ++ ++I  +L       P    + K   +
Sbjct: 128 EQLEEQMELWKEKVPTAEIYPISALENFNVPQVFSRIIELLPESPAFYPKDQLTDKPERF 187

Query: 382 HLSQTVR 388
            +++T+R
Sbjct: 188 FVNETIR 194


>gi|154247805|ref|YP_001418763.1| GTP-binding protein Era [Xanthobacter autotrophicus Py2]
 gi|154161890|gb|ABS69106.1| GTP-binding protein Era [Xanthobacter autotrophicus Py2]
          Length = 385

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 69/193 (35%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + +LG  NAGKS+L N L    V+IV+    TTR ++          + + DT G
Sbjct: 90  RCGF-VALLGAPNAGKSTLTNQLVGTKVSIVSHKVQTTRAIVRGIALDGAAQLVLVDTPG 148

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           I      +E+  +   +    +AD+I LL +     +             +     I  K
Sbjct: 149 IFSPKRRLERAMVSSAWTHAADADVIALLVDAKRGLDEDIEALLAPLSQIHKPRALILNK 208

Query: 329 SDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D+                   +   ++S+ TG+G+ ++       +       P    S
Sbjct: 209 IDIIRRDTLLALAAQINEKLAFDRVFMVSALTGDGVADVRRWFAEQVPLSPWLYPEDQVS 268

Query: 376 HKRHLYHLSQTVR 388
                   ++  R
Sbjct: 269 DAPMRMLAAEITR 281


>gi|194397601|ref|YP_002037604.1| GTP-binding protein Era [Streptococcus pneumoniae G54]
 gi|226741240|sp|B5E488|ERA_STRP4 RecName: Full=GTPase Era
 gi|194357268|gb|ACF55716.1| GTP-binding protein Era homolog [Streptococcus pneumoniae G54]
          Length = 299

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI+ D   TTR+ +      +   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNHVMGQXIAIMXDKAXTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSD--- 330
             +    ++  +  +   D +L +   +  +        E      +  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKVH 127

Query: 331 ---LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              L S   +  + +        S+  G  +  L++ +   L   F+  P    +     
Sbjct: 128 PDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ VR
Sbjct: 188 FLVSEMVR 195


>gi|325290526|ref|YP_004266707.1| GTP-binding protein Era-like-protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965927|gb|ADY56706.1| GTP-binding protein Era-like-protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 305

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 82/202 (40%), Gaps = 22/202 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            + +  +  R+G+ + ++G  NAGKS+L N L  + V I+++ P TTR+ +   L  E  
Sbjct: 3   DKTEKTKDFRSGF-VAVVGRPNAGKSTLLNTLVGQKVLIISEKPQTTRNRIQCILTEERG 61

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKN 319
            +   DT GI +    + +  +      +   DLI+ + + +            +     
Sbjct: 62  QIVFIDTPGIHKPKHQLGQYMVNTAKGSLRGTDLIIYVVDASVPFGTGDEYVLNMVKESG 121

Query: 320 IDFIFIGTKSDLYST---------YTEEYDH----LISSFTGEGLEELINKIKSILSNKF 366
           I  I    K DL S          ++++ D      IS+  GE  ++L + I   L    
Sbjct: 122 IPSILALNKIDLLSKEEILSKIIEFSQQADFKEVVPISALQGENTKKLTDLIFPNLLPGP 181

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
              P      +   + +++ +R
Sbjct: 182 MYYPEDHIIDQPERFVVAELIR 203


>gi|147862085|emb|CAN80885.1| hypothetical protein VITISV_016760 [Vitis vinifera]
          Length = 355

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 3/157 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  ++  ++ I+G  N GKS+L N L +++  +V    G TRD +      +G  V + D
Sbjct: 30  EESKSPLQLAIVGRPNVGKSTLLNTLLQENRVLVGPEAGLTRDSVRAQFQFQGRTVYLVD 89

Query: 274 TAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
           TAG     + +       + ++   +  A ++ L+ +               + I  ++ 
Sbjct: 90  TAGWLQRTKQEKGPASLSVMQSRKSIMRAHVVALVLDAEEIANARSSMKHAEVVIARRAV 149

Query: 331 LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                     + +    G    +L  K+   +  + +
Sbjct: 150 EEGRGLVVIVNKMDLLKGRKNSKLYEKVMEAVPEEIQ 186


>gi|167626235|ref|YP_001676735.1| GTP-binding protein Era [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596236|gb|ABZ86234.1| GTP-binding protein [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 297

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 21/164 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N + K  ++I +  P TTR  +T    L        DT GI  + 
Sbjct: 7   ISIIGRPNVGKSTLLNNILKYKISITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIDE 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSD--- 330
              + K   K     V+  D+IL + E+    E+            +    +  K D   
Sbjct: 67  PKAINKFMNKAATAMVKEVDVILFVVELGKWTELEDNIVEKLKHSQVPIFLVVNKVDKKK 126

Query: 331 ------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSN 364
                    +  E+         S+  G  + EL ++I+ +L  
Sbjct: 127 SLEASMFIESIKEKLSFYDVIYVSAKQGHNVNELESRIEKLLPE 170


>gi|241203890|ref|YP_002974986.1| GTP-binding protein Era [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857780|gb|ACS55447.1| GTP-binding protein Era [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 313

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 77/198 (38%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 24  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKSDLY- 332
             +++  +   +    +ADLI+LL +       +++  +   K      I +  K D   
Sbjct: 84  RRLDRAMVTSAWGGARDADLIVLLIDSERGLRGDAEAILEGLKEVRQPKILLLNKIDRVN 143

Query: 333 ------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                            E   +IS+  G G ++L++ +   L       P    S     
Sbjct: 144 REDLLALAAAANEKIAFERTFMISAENGSGCDDLMDYLAKTLPEGPWYYPEDQISDLPMR 203

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+++
Sbjct: 204 QLAAEITREKLFLRLHQE 221


>gi|257463915|ref|ZP_05628301.1| GTP-binding protein [Fusobacterium sp. D12]
 gi|317061442|ref|ZP_07925927.1| GTP-binding protein [Fusobacterium sp. D12]
 gi|313687118|gb|EFS23953.1| GTP-binding protein [Fusobacterium sp. D12]
          Length = 400

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 18/171 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKSSLFN L  +D ++V+   GTT D +   ++L GY  V++ DTAG
Sbjct: 9   NRKHIAFFGKRNAGKSSLFNLLLGEDFSLVSKQLGTTTDPVYKAMELVGYGPVRLIDTAG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK---------NIDFIFIGT 327
           + +  ++ E   +K++   ++  D+ + + + + +      K         +I ++F+  
Sbjct: 69  LDDIGELGELR-VKKSKEVLQKIDMAIYVLDSSQEVTEEERKEAKRLFQRFHIPYVFVWN 127

Query: 328 KSD-----LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           K D     L + + E+Y  D  +     E  ++L++ I   L  + +    
Sbjct: 128 KRDMVGEILEAEWKEKYPEDIYLHIRPAEKKKQLVDCIVKKLELQEEDPSL 178


>gi|127511988|ref|YP_001093185.1| GTP-binding protein Era [Shewanella loihica PV-4]
 gi|126637283|gb|ABO22926.1| GTP-binding protein Era [Shewanella loihica PV-4]
          Length = 331

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 83/239 (34%), Gaps = 30/239 (12%)

Query: 200 KNDISSHISQGKLG---EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            +++ + ++ G+ G   E+   G  + I+G  N GKS+L N L  + ++I +  P TTR 
Sbjct: 16  LDELLARMNSGRSGSQYEVTYCGM-VAIVGRPNVGKSTLLNKLLGQKISITSKKPQTTRH 74

Query: 257 VLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKK 312
            +          V   DT G+  E    + +   +     +    L++ + +     +  
Sbjct: 75  RIMGIHTDGPRQVVFIDTPGLHIEEKRAINRLMNRAASSSLAEVSLVVFVVDGLNWTADD 134

Query: 313 EISFPK------NIDFIFIGTKSD--------------LYSTYTEEYDHLISSFTGEGLE 352
           E+   K          I    K D              L + +  +    IS+  G  ++
Sbjct: 135 EMVLKKLHNRDDGRKTILAINKVDNIKDKEALFPHLQTLAAKFEFDEILPISATHGTNVQ 194

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            ++      +       P    + +   +  S+ VR   M  L + +   D     +  
Sbjct: 195 RIMELALESVPESPHYFPEDYVTDRSQKFMASEIVREKLMRFLGD-ELPYD-ATVEIEQ 251


>gi|315122134|ref|YP_004062623.1| GTP-binding protein EngA [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495536|gb|ADR52135.1| GTP-binding protein EngA [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 448

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 78/205 (38%), Gaps = 30/205 (14%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
               I     +I ++G  N GKS+L N L   +  ++    GTTRD + I  + + + +K
Sbjct: 172 DSSNISSKPLRIAVVGRPNVGKSTLINRLLGYNRVLIGPKAGTTRDSIPISWEWKNHPIK 231

Query: 271 ISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID------ 321
           I DTAG+R+   I+   EK+ + ++   +   +  ++L +     E    + +D      
Sbjct: 232 IFDTAGMRKPSRIIEQVEKKSVTKSMQSIRVCETTIVLLDATVPFEKQDLRIVDSVINTG 291

Query: 322 --FIFIGTKSDLYST-------------------YTEEYDHLISSFTGEGLEELINKIKS 360
              +    K DL +T                           IS  TGEGL+ L+  +  
Sbjct: 292 RAAVLAFNKWDLVTTDKSILLQNLRIKATNNLPQAGNIRIEAISGHTGEGLDNLMASVLE 351

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQ 385
           I      ++  S  +       L  
Sbjct: 352 INKLWKTRISTSRLNSWLEQTQLKN 376



 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 20/151 (13%)

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303
           AIV D PG TRD L     + G+   + DTAGI  E    + K+   +T + ++ A L L
Sbjct: 2   AIVGDCPGMTRDRLYGKAIINGFEFNVIDTAGIENENSHFIAKQTNDQTEIAIDEAHLAL 61

Query: 304 LLKEINSK--------KEISFPKNIDFIFIGTKS----------DLYSTYTEEYDHLISS 345
            L +  S          +    KNI  I +  K           D+YS   +E    IS+
Sbjct: 62  FLIDSKSGITPYDHLIAKFLRKKNIPIIIVSNKMETHIAQRNFHDIYSFGFKEI-VEISA 120

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
             G G+ +L + I  +   ++      I  +
Sbjct: 121 EHGIGISDLYSVIIKLFKQQYPDYQLEIKEN 151


>gi|241668676|ref|ZP_04756254.1| GTP-binding protein Era [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877209|ref|ZP_05249919.1| GTP-binding protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843230|gb|EET21644.1| GTP-binding protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 297

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 21/164 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N + K  ++I +  P TTR  +T    L        DT GI  + 
Sbjct: 7   ISIIGRPNVGKSTLLNNILKYKISITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIDE 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSD--- 330
              + K   K     V+  D+IL + E+    E+            +    +  K D   
Sbjct: 67  PKAINKFMNKAATAMVKEVDVILFVVELGKWTELEDNIVEKLKYSQVPIFLVVNKVDKKK 126

Query: 331 ------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSN 364
                    +  E+         S+  G  + EL ++I+ +L  
Sbjct: 127 SLEASMFIESIKEKLSFYDVIYVSAKQGHNVNELESRIEKLLPE 170


>gi|271963792|ref|YP_003337988.1| GTP-binding family protein [Streptosporangium roseum DSM 43021]
 gi|270506967|gb|ACZ85245.1| GTP-binding family protein ; K03665 GTP-binding protein HflX
           [Streptosporangium roseum DSM 43021]
          Length = 494

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 100/255 (39%), Gaps = 26/255 (10%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
             + ++     +E +  +     ++++     +     R    + I G++NAGKSSL N 
Sbjct: 229 ETKIELDRRRIRERMAKLRRQIIEMTTSRVTKRARRQEREVPAVAIAGYTNAGKSSLLNR 288

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L    V +   +  T    +      EG L  ++DT G          E  + T  EV +
Sbjct: 289 LTGAGVLVEDSLFATLDPTVRRAHTPEGRLFTLADTVGFVRHLPHQLVEAFRSTLEEVGD 348

Query: 299 ADLILLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYS-------TYTEE 338
           ADLIL + + +                +I   ++I  I +  K+D+         T  E+
Sbjct: 349 ADLILHVVDGSHPDPESQLAAVREVVADIEGARDIPEIVVINKADVADPVVLAQLTAREK 408

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT------VRYLEM 392
           +  ++S+ TG G++EL+  I+  L    +++   +P  +  L   +        V + E 
Sbjct: 409 HTVVVSARTGAGIDELLAIIERELPRFDQEVRLLVPYQRGDLISRAHKEGEVLGVEHTED 468

Query: 393 ASLNEKDCGLDIIAE 407
            ++        + AE
Sbjct: 469 GTILHARVLPALFAE 483


>gi|78185078|ref|YP_377513.1| GTP-binding protein Era [Synechococcus sp. CC9902]
 gi|78169372|gb|ABB26469.1| GTP-binding protein Era [Synechococcus sp. CC9902]
          Length = 319

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 79/196 (40%), Gaps = 24/196 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ I ++G  N GKS+L N L  + VAI + +  TTR+ L   L  E   + + DT 
Sbjct: 17  YRSGF-IALIGRPNVGKSTLLNKLVGEKVAITSPVAQTTRNRLRAILTTEESQMVLVDTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGT 327
           GI +   ++ +  +      +   DL+LLL E   +          +   +++  +    
Sbjct: 76  GIHKPHHLLGERLVHSARSAIGEVDLVLLLLEGCERPGRGDAFIVNLLKQQSLPVLVALN 135

Query: 328 KSDLYS---------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           K DL +                 T    H  S+ +G+G  EL   +   L    +  P  
Sbjct: 136 KWDLVAADQQDQAAASYDELLAETHWPVHRCSAISGDGCRELSVAMAEQLPLGPQLYPPD 195

Query: 373 IPSHKRHLYHLSQTVR 388
           + + +     L + +R
Sbjct: 196 MVTDQPERVLLGELIR 211


>gi|157870969|ref|XP_001684034.1| GTP-binding protein-like protein [Leishmania major]
 gi|68127102|emb|CAJ04581.1| putative ras-like small GTPases [Leishmania major strain Friedlin]
          Length = 497

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 105/285 (36%), Gaps = 48/285 (16%)

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSM--EGMSGELSSLYGQWIDKLTHIRSFIEAD 175
               K+DL+  E  A ++     +    ++       E   +    ++ L HI +  + +
Sbjct: 140 LLVNKMDLVPEEEEALVLDVYNRLGLGKAVPFSARKREGLDMLSALLEPLYHIHAMRKVE 199

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
            D+    D+++ +       +  +++                   ++ I+G +N+GK+SL
Sbjct: 200 NDW----DIEDLAMAGDEAAMEEIRD-----------RNCTDRYIRVAIVGRTNSGKTSL 244

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI----RETDDIVEKEGIKR 291
            N L   +     D   TTRD + I    +G  +K+ DTAG+      TD          
Sbjct: 245 VNRLVGYERNRAADESNTTRDPIEIACMYKGRKLKLIDTAGLARQRYRTDREFLSRIHSL 304

Query: 292 TFLEVENADLILLLKEINS----KKEISFP-----KNIDFIFIGTKSDLY---STYTEEY 339
           +  E+  A +++++ +       K ++S       +   F+    K D     S   E  
Sbjct: 305 SLNEIRYAHVVIVVFDATEGHPNKYDMSILHKVAQEGRPFVLCANKWDAVLDQSATAEAI 364

Query: 340 DHLI---------------SSFTGEGLEELINKIKSILSNKFKKL 369
           D  I               S+ TG  L  L++++  +     K++
Sbjct: 365 DFKIKRQVQEVKYSNAVVVSAHTGMNLTLLMDQVLELYDTWNKRV 409



 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 72/206 (34%), Gaps = 35/206 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
            ++ I+G  N+GKSSLFN L +         IV D  G TRD +     L+     + DT
Sbjct: 29  LRVAIVGRMNSGKSSLFNLLCEDPTMPAKKNIVKDFNGITRDCVEAHAALDDLHFTVIDT 88

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIG 326
            G+      +  + ++  F  VE AD  + +  ++                K +    + 
Sbjct: 89  PGL------LGGKLVEEAFRTVETADAAIFVTAVDEDVSAEEHDLIQYLAAKKMPTCLLV 142

Query: 327 TKSDLYSTYTEEY------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            K DL     E                  S+   EGL+ L   ++ +      +      
Sbjct: 143 NKMDLVPEEEEALVLDVYNRLGLGKAVPFSARKREGLDMLSALLEPLYHIHAMRK----V 198

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDC 400
            +   +  L+       M  + +++C
Sbjct: 199 ENDWDIEDLAMAGDEAAMEEIRDRNC 224


>gi|330815987|ref|YP_004359692.1| GTP-binding protein Era [Burkholderia gladioli BSR3]
 gi|327368380|gb|AEA59736.1| GTP-binding protein Era [Burkholderia gladioli BSR3]
          Length = 300

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    L        DT G +   
Sbjct: 15  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLPDAQYIFVDTPGFQTRH 74

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + RT    + + D IL + E       + K     PK++  + I  K D  + 
Sbjct: 75  STALNRSLNRTVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPKSVPTLLILNKLDRITD 134

Query: 335 YTEEYDH 341
            +  +  
Sbjct: 135 KSSLFPF 141


>gi|291549419|emb|CBL25681.1| iron-only hydrogenase maturation protein HydF [Ruminococcus torques
           L2-14]
          Length = 423

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 80/171 (46%), Gaps = 26/171 (15%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           +     I   G  NAGKSS+ NA+  +D+A+V+D+ GTT D +   ++L     V + DT
Sbjct: 18  VSERVHIGFFGKRNAGKSSVMNAVTGQDLAVVSDVKGTTTDPVYKTMELLPLGPVVMMDT 77

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISF-----PKNIDFIFIG 326
            GI +  ++ E   +K+++  +   D+ +++ +      ++++        KNI +I + 
Sbjct: 78  PGIDDEGELGELR-VKKSYQVLNKTDIAVVVIDGTCGVGEEDLKITERIQKKNIPYIIVL 136

Query: 327 TKSDLYSTYTE----------------EYDHLISSFTGEGLEELINKIKSI 361
            K + ++   E                E   L+S+    G+ EL  ++ ++
Sbjct: 137 NKCERFTQEDERLRVQENTASYLKTEKEKILLVSAADKSGIYELKEELGAL 187


>gi|89900533|ref|YP_523004.1| GTP-binding protein Era [Rhodoferax ferrireducens T118]
 gi|89345270|gb|ABD69473.1| GTP-binding protein Era [Rhodoferax ferrireducens T118]
          Length = 314

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 7/123 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T             DT G +   
Sbjct: 23  IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHSQGAAQFVFVDTPGFQTRH 82

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYST 334
           +      + +T L  V + DLIL + E       ++K      K+I  + +  K D  + 
Sbjct: 83  NNALNRSLNKTVLGAVGDVDLILFVVEAGMFNQADAKVLALLSKDIPTLLVANKLDQVTR 142

Query: 335 YTE 337
             +
Sbjct: 143 RAD 145


>gi|291000700|ref|XP_002682917.1| small GTPase [Naegleria gruberi]
 gi|284096545|gb|EFC50173.1| small GTPase [Naegleria gruberi]
          Length = 644

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 39/198 (19%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL--DLEGYLVK 270
           G    N  ++ I+G SN GKS+L N L  ++    +  PGTTRD + ++   +  G    
Sbjct: 362 GMKEDNIMRLAIIGRSNVGKSTLLNHLIGEERTRTSSTPGTTRDTIEVEAINEKTGQHYL 421

Query: 271 ISDTAGIRETD----DIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISF 316
           I DTAGIR+      D +E+  +K T+  ++ A++  L+ +            +++++  
Sbjct: 422 ICDTAGIRKKKHTDTDRIEQMSLKDTYRTIKYANVCCLVVDPTHNISGEGYGLTQQDLDI 481

Query: 317 PK-----NIDFIFIGTKSDLY------------------STYTEEYDHLISSFTGEGLEE 353
            +         +    K D+                   S        + S+ TG+ L  
Sbjct: 482 ARMVEKEGRSLVIACNKWDMVKNPYVVAQQIESQIESSLSQMQGISVVVCSAKTGKNLSL 541

Query: 354 LINKIKSILSNKFKKLPF 371
           L+ + +        K+  
Sbjct: 542 LLKECEKSYRKWSSKIST 559



 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 27/158 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY------LVK 270
           +   ++ I+G  N GKS+LFN+L  +  +IV + PG TRD       ++         V 
Sbjct: 34  KKNLRVAIIGRENVGKSTLFNSLLGRQHSIVHNSPGVTRDCQEAKTQIKLKYPMNVSEVV 93

Query: 271 ISDTAGIR----------ETDDIVEKEG-IKRTFLEVENADLILLLKEINSKKE------ 313
               A  R          +T      E  I++T   + ++++ LL+ +     +      
Sbjct: 94  FDKKARKRLIKKISCTFIDTPGANFMESIIQQTQDSIASSNVALLVTDCRDGLQKWDYHV 153

Query: 314 --ISFPKNIDFIFIGTKSD--LYSTYTEEYDHLISSFT 347
                 K I  + I  K D  L    ++E + +IS  T
Sbjct: 154 ANYLEMKGIPALHILNKCDGPLMRGDSDELEEVISKNT 191


>gi|224531545|ref|ZP_03672177.1| GTP-binding protein Era [Borrelia valaisiana VS116]
 gi|224511010|gb|EEF81416.1| GTP-binding protein Era [Borrelia valaisiana VS116]
          Length = 290

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+   ILG  + GKS+L N++    ++I++ IP TTR+ +          +   DT 
Sbjct: 1   MKSGF-AAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNNIKGIFTDGRGQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGT 327
           G   +        +K     +   +LIL + +I  K         EI     I F+ +  
Sbjct: 60  GFHLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVLLN 119

Query: 328 KSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL +T  +E                 IS+      EEL NKI    S      P    
Sbjct: 120 KVDLKNTKIKEITQFLKEKEIEDNNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYY 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + ++  + +S+ +R   + +L E+
Sbjct: 180 TDQKINFRISEIIREKAIENLKEE 203


>gi|153809062|ref|ZP_01961730.1| hypothetical protein BACCAC_03370 [Bacteroides caccae ATCC 43185]
 gi|149128395|gb|EDM19614.1| hypothetical protein BACCAC_03370 [Bacteroides caccae ATCC 43185]
          Length = 293

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 71/163 (43%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I T    TTR  +    + +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDEMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++       N   E      +  + +  K DL   
Sbjct: 67  YKLQESMLNFSTSALTDADILLYVTDVVETPDKNNEFMEKVRQMTVPVLLLINKIDLTDQ 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                          +     IS+ +   ++ ++ +IK +L +
Sbjct: 127 EKLVKLVEEWKELLPQAEIIPISAASKFNVDYVMKRIKELLPD 169


>gi|255087368|ref|XP_002505607.1| predicted protein [Micromonas sp. RCC299]
 gi|226520877|gb|ACO66865.1| predicted protein [Micromonas sp. RCC299]
          Length = 292

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 23/194 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + I+G  NAGKS+L N L    ++IVT  P TTR  +   +  + Y + + DT G
Sbjct: 2   RSGY-VAIVGRPNAGKSTLLNQLVGTKLSIVTFKPQTTRHRILGIVSEDHYQMVLLDTPG 60

Query: 277 IRETDDIVEKEGIKRTFL-EVENADLILLLKEINSKK----EISFPKNI----DFIFIGT 327
           + + +     E + ++    + NAD++L + +         E   P++         I  
Sbjct: 61  VMKEEFNKLDEMMLKSVRNAMANADVLLAIVDATRDPYGAFEGLLPEHRANPAPLGVIIN 120

Query: 328 KSDL--------YSTYTE-----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL           Y E     E    +S+  G G + +     + L       P    
Sbjct: 121 KCDLLQVDEIREVKEYFEGIPGVERVFPVSALAGVGHDAVREWALTHLPEGPTLYPKDTI 180

Query: 375 SHKRHLYHLSQTVR 388
           S     + +++ +R
Sbjct: 181 SEHPERFFIAEIIR 194


>gi|160890562|ref|ZP_02071565.1| hypothetical protein BACUNI_03005 [Bacteroides uniformis ATCC 8492]
 gi|270295702|ref|ZP_06201902.1| GTP-binding protein Era [Bacteroides sp. D20]
 gi|317479894|ref|ZP_07939010.1| GTP-binding protein Era [Bacteroides sp. 4_1_36]
 gi|156859561|gb|EDO52992.1| hypothetical protein BACUNI_03005 [Bacteroides uniformis ATCC 8492]
 gi|270273106|gb|EFA18968.1| GTP-binding protein Era [Bacteroides sp. D20]
 gi|316903941|gb|EFV25779.1| GTP-binding protein Era [Bacteroides sp. 4_1_36]
          Length = 293

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 21/149 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +    + +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNVLVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++       N   E     ++  + +  K DL   
Sbjct: 67  YKLQESMLNFSTSALTDADVLLYVTDVVETPDKHNDFVEKVGHLDVPVLLLINKIDLS-- 124

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILS 363
                         E L EL+   K +L 
Sbjct: 125 ------------NQEKLVELVEAWKELLP 141


>gi|328474122|gb|EGF44927.1| GTPase Era [Vibrio parahaemolyticus 10329]
          Length = 303

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 12  IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L+  L +        E+   K    N   +    K D   
Sbjct: 72  KRAINRLMNRAANSSLSDVNLVFFLVDGTHWTKDDEMVLTKLQKSNFPVVLCVNKVDNVQ 131

Query: 334 TYTEEYDHL--------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H+              IS+  G+ ++ L   +++ L       P    + +  
Sbjct: 132 DRNEVMLHMAEMSKKMDFVDVVPISAKQGKNIDVLRKHVRNHLPKATHHFPEEYVTDRSQ 191

Query: 380 LYHLSQTVR 388
            +  S+ VR
Sbjct: 192 RFMASEIVR 200


>gi|159490690|ref|XP_001703306.1| hypothetical protein CHLREDRAFT_114154 [Chlamydomonas reinhardtii]
 gi|158280230|gb|EDP05988.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 450

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 10/124 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG--I 277
            K+ I+G  NAGKS+L NAL  +  A+    PG TRD +          V++ DTAG  +
Sbjct: 192 MKLAIMGLPNAGKSTLLNALLGEQRAVTGPEPGLTRDSVRAAWTYGDTAVELVDTAGWVM 251

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKS 329
           R     V     +     +    ++LL+ +          S       +    + +  K+
Sbjct: 252 RRNWRGVAAMSRRAALTSLAQVHVVLLVLDAERALASDRVSLAGTVLREGKALVVVANKA 311

Query: 330 DLYS 333
           D+ S
Sbjct: 312 DVLS 315



 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 67/163 (41%), Gaps = 25/163 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGT--TRDVLTIDLDLEGYLVKISDTAGIRE 279
           + ++G  N GKS+LFN L ++  A+V D P +  TRD       L   + +++DT+G+  
Sbjct: 1   VALVGRPNVGKSALFNRLIRRRQALVYDTPASHVTRDYQEGRAQLGDLVFRVADTSGLEP 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNI----DFIFIGTKS 329
                      +    +  + L L++ +         ++   + +        + +  K+
Sbjct: 61  RTAAAAGTIQVQRVRLLSQSHLALMVVDAKTGVLPADEELAEWLRRHVPAGRVMVVANKA 120

Query: 330 D-----------LYSTYTEEYDHLI--SSFTGEGLEELINKIK 359
           +           +Y  Y   +   +  S+ TGEGL +L   ++
Sbjct: 121 EGGRAQEEMPQTVYDCYRLGFGEPMAVSASTGEGLADLFAALQ 163


>gi|222099201|ref|YP_002533769.1| Small GTP-binding protein [Thermotoga neapolitana DSM 4359]
 gi|221571591|gb|ACM22403.1| Small GTP-binding protein [Thermotoga neapolitana DSM 4359]
          Length = 439

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 21/181 (11%)

Query: 207 ISQGKLGEIIRNGYKIVIL--GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           + +G    +   G++  I+  G  N GKSS  NAL  ++V+IV+D  GTT D +   ++L
Sbjct: 30  LYRGDSVRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMEL 89

Query: 265 EGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFP 317
                V + DT G+ +  ++     +++       AD  +L+ +       +    +   
Sbjct: 90  HPIGPVTLVDTPGLDDVGELGRLR-VEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKE 148

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKF 366
             I F+ +  K D+     EE   L            S+   +G +++   I  IL    
Sbjct: 149 MEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGDE 208

Query: 367 K 367
           +
Sbjct: 209 E 209


>gi|119356257|ref|YP_910901.1| GTP-binding protein Era [Chlorobium phaeobacteroides DSM 266]
 gi|119353606|gb|ABL64477.1| GTP-binding protein Era [Chlorobium phaeobacteroides DSM 266]
          Length = 305

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 26/192 (13%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           VI+G  NAGKS+L N L    ++IVT  P TTR  +T     +   +   DT GI +   
Sbjct: 12  VIIGAPNAGKSTLLNKLLDYKLSIVTPKPQTTRKRITGIYHKDQCQIIFLDTPGIMKPQQ 71

Query: 283 IVEKEGIKRTFLEVENADLILLL---------KEINSKKEI----SFPKNIDFIFIGTKS 329
            + +  ++ T   +++AD++L L          ++   +++      P     I +  KS
Sbjct: 72  KLHESMLEITRATLKDADVVLALLPYSRQSGSVDLEFTEDLFSSWLNPSGKPVIAVLNKS 131

Query: 330 DLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           DL S   +             +    IS+  G  +E LI+ +K  L  K    P    S 
Sbjct: 132 DLVSAEAKRTCESVIQNSFHPKAVLSISAQLGNNIEGLISALKPFLPLKEPLYPEETLST 191

Query: 377 KRHLYHLSQTVR 388
                 +++ +R
Sbjct: 192 DPERLFVTEIIR 203


>gi|15242912|ref|NP_200604.1| GTP-binding family protein [Arabidopsis thaliana]
 gi|9758365|dbj|BAB08866.1| GTP binding protein-like [Arabidopsis thaliana]
 gi|332009595|gb|AED96978.1| GTP-binding protein, HflX [Arabidopsis thaliana]
          Length = 540

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 101/266 (37%), Gaps = 24/266 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++++  M  +L  L   W          ++      ++ +V     +  +  
Sbjct: 228 AATHEAALQVALAQMEYQLPRLTRMWTHLERQSGGQVKGM--GEKQIEVDKRILRTQIGV 285

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +      +  H  Q +   +      + ++G++NAGKS+L N L   +V +  +    T 
Sbjct: 286 LKKELESVRKHRKQYRSRRVAIPVPVVSLVGYTNAGKSTLLNQLTGANV-LAENRLFATL 344

Query: 256 DVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SK 311
           D  T  + +  G    ++DT G  +          + T  E+  + L++ + +I+   ++
Sbjct: 345 DPTTRRVQMQNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEIAESSLLVHVVDISHPLAE 404

Query: 312 KEISFPKN---------IDFIFIGTKSDLYS---TYTEEYD-----HLISSFTGEGLEEL 354
           ++I   +          I  + +  K D          E +       IS+ TGEGL++ 
Sbjct: 405 QQIEAVEKVMSELDVSSIPKLVVWNKVDRVDDPQKVKLEAEETGDTICISALTGEGLDDF 464

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHL 380
            N +   L +    +   +P  K  L
Sbjct: 465 CNAVHEKLKDSMVWVEALLPFDKGDL 490


>gi|329117153|ref|ZP_08245870.1| ribosome biogenesis GTPase Era [Streptococcus parauberis NCFD 2020]
 gi|326907558|gb|EGE54472.1| ribosome biogenesis GTPase Era [Streptococcus parauberis NCFD 2020]
          Length = 299

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   +   DT GI +  
Sbjct: 8   VAILGRPNVGKSTFLNYVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDLY- 332
             +    ++  +  +   + ++ +   + K+       I   K   I  I +  K D   
Sbjct: 68  TALGDFMVESAYSTLREVETVIFMVPADEKRGKGDDMIIERLKTAKIPVILVINKIDKVH 127

Query: 333 -STYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                E+ D             IS+  G  +  L+  +K  L   F+  P    +     
Sbjct: 128 PDQLLEQIDDFRNQMDFKEVVPISALQGNNVNPLMEILKDNLEEGFQYFPEDQITDHPER 187

Query: 381 YHLSQTVR 388
           + +S+ +R
Sbjct: 188 FLVSEMIR 195


>gi|58699336|ref|ZP_00374112.1| GTP-binding protein Era [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58534148|gb|EAL58371.1| GTP-binding protein Era [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 128

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 1/108 (0%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G  NAGKS+L N++  K +AIVT    TTR  +          V  +D+ GI   +
Sbjct: 9   VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQVVFTDSPGIFSAE 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFPKNIDFIFIGTK 328
             +EK  +K  +  V+++D+ LLL ++++  K I   K I      TK
Sbjct: 69  TKLEKALVKSAWSAVKDSDITLLLVDVSNYLKNIERIKTIFMRLQRTK 116


>gi|186475607|ref|YP_001857077.1| GTP-binding protein Era [Burkholderia phymatum STM815]
 gi|184192066|gb|ACC70031.1| GTP-binding protein Era [Burkholderia phymatum STM815]
          Length = 287

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + V+I +    TTR  +T    L+       DT G +   
Sbjct: 2   VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGINTLDDAQYIFVDTPGFQTRH 61

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D +L + E       + K     P +   + I  K D  S 
Sbjct: 62  SGALNRSLNRAVTSTLTSVDAVLFVIEAGRFGPDDQKVLDLIPASAPTLLIANKLDRVSD 121

Query: 335 YTEEYDHLISSFTGEGLEELI-------NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
               +  +         +E++       + IK +L+     LP   P +        ++ 
Sbjct: 122 KDSLFPFMQQMSAAREFKEIVPLSARNPDDIKRLLTTVKPYLPQGDPIYGED-DLTDRSE 180

Query: 388 RYLEMASLNEK 398
           R+L    L EK
Sbjct: 181 RFLAAEILREK 191


>gi|323452265|gb|EGB08139.1| hypothetical protein AURANDRAFT_64089 [Aureococcus anophagefferens]
          Length = 552

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 18/137 (13%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + +  ++ ++G  N GKS+L NALA+ +VA+    PG TRD +   +D+ G  V++ DTA
Sbjct: 226 LDDEVRVALVGRPNVGKSTLVNALARSNVAVAAPEPGVTRDAVECAVDVAGRAVRLVDTA 285

Query: 276 GIRE---------TDDIVEKEGIKRTFLEV-ENADLILLLKEINS---KKEISFPKN--- 319
           G+R          + D VE+   + T LEV    D+ + + + +    + ++   ++   
Sbjct: 286 GVRRVLEGTTSRASKDAVEERAARSTELEVGGRCDVAVFVVDCSGPLRRDDLRLARHLSE 345

Query: 320 --IDFIFIGTKSDLYST 334
             +  + +  K D Y  
Sbjct: 346 ARLPVVVLANKVDAYRA 362



 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 41/136 (30%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNAL-----AKKDVA-------------------- 245
           +   ++R  +++ I+G  N GKS+LFNAL     A++  A                    
Sbjct: 2   RATRLLR--FQVAIVGRPNVGKSTLFNALRDVRSARERPAPGAASPTGKKSRQHRLPPTA 59

Query: 246 -IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-----------ETDDIVEKEGIKRTF 293
            + + +  TTRDV +    L     ++ DTAG+            +         + R  
Sbjct: 60  QLTSPVARTTRDVRSAPGRLGDLRFEVVDTAGLEVGDGAFRSAPPQRGAFPGMPAVLRDL 119

Query: 294 LE--VENADLILLLKE 307
               V NAD+ L++ +
Sbjct: 120 TAGCVANADVALVVLD 135


>gi|319774961|ref|YP_004137449.1| GTP-binding protein Era-like protein [Haemophilus influenzae F3047]
 gi|329123137|ref|ZP_08251707.1| GTP-binding protein Era [Haemophilus aegyptius ATCC 11116]
 gi|317449552|emb|CBY85757.1| GTP-binding protein era homolog [Haemophilus influenzae F3047]
 gi|327471692|gb|EGF17134.1| GTP-binding protein Era [Haemophilus aegyptius ATCC 11116]
          Length = 302

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 13  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----------NIDFIFIG 326
              + +   +     + + DLI+ + +    N+  E+   K                 I 
Sbjct: 73  KRAINRLMNRAASSAIGDVDLIIFVVDGTHWNADDEMVLNKLRNAKAPVVLAINKVDNIK 132

Query: 327 TKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL    T+        +   IS+  G  + EL   ++  L       P    + +  
Sbjct: 133 NKDDLLPFITDLSSKFNFAHIVPISAQRGNNVHELETIVRQSLREGVHHFPEDYVTDRSQ 192

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 193 RFMASEIIR 201


>gi|308274308|emb|CBX30907.1| GTP-binding protein era homolog [uncultured Desulfobacterium sp.]
          Length = 303

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 88/202 (43%), Gaps = 22/202 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           ++ +     ++GY + I G  NAGKS+L N L    ++I +  P TTR+ +   +     
Sbjct: 4   AESEEKTEFKSGY-VAIAGAPNAGKSTLLNKLLGFKISITSKKPQTTRNKILGVVHRPLS 62

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPKNI---- 320
            +   DT GI + ++ +  + +        + D+IL++ +    +SK E    KN+    
Sbjct: 63  QLVFIDTPGIFKANNALNIKIVDAALSTFGDVDIILIVGDAANPDSKSESILIKNMESIN 122

Query: 321 -DFIFIGTKSDLYST---------YTEEYDH----LISSFTGEGLEELINKIKSILSNKF 366
              +    K D+            + + +D      +S+ + EG+E+L+  +++IL    
Sbjct: 123 KPVVLALNKIDIVDKSKLLEIIIQWEKRFDFKAVVPVSAKSAEGVEDLLCVLENILPPGP 182

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
              P  + +     +  ++ +R
Sbjct: 183 AFFPEDMLTDVPERFVAAEMIR 204


>gi|121595569|ref|YP_987465.1| GTP-binding protein Era [Acidovorax sp. JS42]
 gi|222111790|ref|YP_002554054.1| gtp-binding protein era [Acidovorax ebreus TPSY]
 gi|120607649|gb|ABM43389.1| GTP-binding protein Era [Acidovorax sp. JS42]
 gi|221731234|gb|ACM34054.1| GTP-binding protein Era [Acidovorax ebreus TPSY]
          Length = 337

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 15/145 (10%)

Query: 200 KNDISSHISQGKLG-------EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +ND+ + ++  + G          R G  I I+G  N GKS+L NAL  + ++I +    
Sbjct: 19  QNDLEAMLAAARPGGDAPAEASGQRCGL-IAIVGKPNVGKSTLMNALVGQKISITSRKAQ 77

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL-EVENADLILLLKE---- 307
           TTR  +T             DT G +        + + +T +  + + DLIL + E    
Sbjct: 78  TTRHRITGIRTRGATQFVFVDTPGFQTRHSTALNKSLNKTVMGAIGDVDLILFVVEAGSF 137

Query: 308 --INSKKEISFPKNIDFIFIGTKSD 330
              ++K    F   I  + I  K D
Sbjct: 138 TLADAKVLSLFKPGIPTLLIANKLD 162


>gi|94985925|ref|YP_605289.1| GTP-binding protein Era [Deinococcus geothermalis DSM 11300]
 gi|189037266|sp|Q1IXB4|ERA_DEIGD RecName: Full=GTPase Era
 gi|94556206|gb|ABF46120.1| GTP-binding protein Era [Deinococcus geothermalis DSM 11300]
          Length = 309

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 73/216 (33%), Gaps = 28/216 (12%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
             + GE   +   + I+G  N GKS+L NA     VA  +  P TTR  +      +   
Sbjct: 7   SPESGETPTHAGFVAIVGKPNVGKSTLLNAFLNTKVAPTSPRPQTTRRGVRGIYSTDTQQ 66

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPK 318
           +   DT G+ +  D + K   +     + + D IL + ++           +++    PK
Sbjct: 67  IVFVDTPGLHKPKDALGKYMNQEVQSALADVDAILWVVDLRHPPTEEDELVARQVRDLPK 126

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTG----------------EGLEELINKIKSIL 362
                 IG K D      E      +   G                + +  L  +I   L
Sbjct: 127 --PLFLIGNKVDAAKYPDEAMRLYRALLEGRTGETHERMLSAQNSPQAVAALREQILDAL 184

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                  P S  S +      ++ +R   M  L E+
Sbjct: 185 PENPFFFPRSSASDQTREQWAAEIIREEAMKRLREE 220


>gi|314922998|gb|EFS86829.1| GTP-binding protein HflX [Propionibacterium acnes HL001PA1]
 gi|314966774|gb|EFT10873.1| GTP-binding protein HflX [Propionibacterium acnes HL082PA2]
 gi|314981109|gb|EFT25203.1| GTP-binding protein HflX [Propionibacterium acnes HL110PA3]
 gi|315091935|gb|EFT63911.1| GTP-binding protein HflX [Propionibacterium acnes HL110PA4]
 gi|315093309|gb|EFT65285.1| GTP-binding protein HflX [Propionibacterium acnes HL060PA1]
 gi|315103436|gb|EFT75412.1| GTP-binding protein HflX [Propionibacterium acnes HL050PA2]
 gi|327327600|gb|EGE69376.1| GTP-binding protein HflX [Propionibacterium acnes HL103PA1]
          Length = 493

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 31/220 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQ---GKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK- 242
           + +  ++  + +     +HI      K  + IRN    + I+G++NAGKSSL N L +  
Sbjct: 237 TDRRRISHRIAVLRRRLTHIESTRASKRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAG 296

Query: 243 ---DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + A+   +  TTR   T     +G +  ++DT G          E    T  E   A
Sbjct: 297 VLVENALFATLDPTTRRATT----SDGRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMA 352

Query: 300 DLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE-------EYD 340
           D++L + + +    +                NI  I +  K D  S  T           
Sbjct: 353 DVLLHVVDADDPDPLGQVDAVRGVLSGIGASNIPEILVLNKIDRLSDETILTLRSTFPGA 412

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +L+S+ TGEG ++L+  I+ +L    +++   IP  +  L
Sbjct: 413 YLVSAHTGEGTDKLVEAIEDVLPIPSQRVDVVIPYARGDL 452


>gi|219685709|ref|ZP_03540522.1| GTP-binding protein Era [Borrelia garinii Far04]
 gi|219672759|gb|EED29785.1| GTP-binding protein Era [Borrelia garinii Far04]
          Length = 290

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+   ILG  + GKS+L N++    ++I++ IP TTR+ +      +   +   DT 
Sbjct: 1   MKSGF-AAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGT 327
           G   +        +K     +   +LIL + +I  K         EI     I F+ +  
Sbjct: 60  GFHLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVLIN 119

Query: 328 KSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL +T  +E                 IS+      EEL NKI    S      P    
Sbjct: 120 KVDLKNTKIKEITQFLKEKGIEDNNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYY 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +   + +S+ +R   + +L E+
Sbjct: 180 TDQEINFRISEIIREKAIENLKEE 203


>gi|167755646|ref|ZP_02427773.1| hypothetical protein CLORAM_01161 [Clostridium ramosum DSM 1402]
 gi|237734394|ref|ZP_04564875.1| GTP-binding protein [Mollicutes bacterium D7]
 gi|167704585|gb|EDS19164.1| hypothetical protein CLORAM_01161 [Clostridium ramosum DSM 1402]
 gi|229382624|gb|EEO32715.1| GTP-binding protein [Coprobacillus sp. D7]
          Length = 296

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 36/221 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N++ +  +AI++D+  TTR+ +      +   +   DT GI +  
Sbjct: 7   VSIVGRPNVGKSTLLNSILETKLAIMSDVAQTTRNTIQGIHTDDEAQIIFMDTPGIHKPQ 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           D +           +   DL+L L   N K         E     +     + +K D  S
Sbjct: 67  DRLGTFMNTTALNSIFGVDLVLFLAPANEKIGRGDKFIIERLKEADGPVFLVLSKIDTVS 126

Query: 334 T---------YTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     + E +D      IS+ T + ++ L+  +K+ L       P    +     
Sbjct: 127 KEELIKKLQEWQELFDFKEIIPISATTNDNIDLLLKTVKAYLPEGNMYYPQDHLTDHPER 186

Query: 381 YHLSQTVR---------------YLEMASLNEKDCGLDIIA 406
           + +++ +R                + +  + E + G++IIA
Sbjct: 187 FVMAEFIREKILYFTKEEVPHSVAIVIERMLEDEAGVEIIA 227


>gi|295114611|emb|CBL35458.1| iron-only hydrogenase maturation protein HydF [butyrate-producing
           bacterium SM4/1]
          Length = 432

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 18/205 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I   G  NAGKSSL NA   +D+A+V+D+ GTT D +   ++L       I DT G
Sbjct: 10  ERVHISFFGCRNAGKSSLLNAFTGQDLAVVSDVKGTTTDPVKKSMELLPLGPAVIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTK 328
           I +   +  +  +++T   +   D+ +L+ +  +   K++         K + ++    K
Sbjct: 70  IDDEGSLGGRR-VRKTRQILNMTDIAVLVADSQTGIRKEDRELAALFQEKEVPYVVAFNK 128

Query: 329 SDLYSTYTEEYDHLISSFTG--EGLEELINKIKS---ILSNKFKKLPFSIPSHKRHLYHL 383
            DL   +  +     +  TG  EG+ E     K    +LS     LP S       +  L
Sbjct: 129 CDLTENHIPDIYKEETKKTGAKEGVPEDRETEKQEAAVLSGAAAVLPVS-ARTGFGIEKL 187

Query: 384 SQTVRYLEMASLNEKDCGL--DIIA 406
            +T+ +++          L  D+++
Sbjct: 188 KETLAHIKTVEEGRDHVPLIGDLLS 212


>gi|282854031|ref|ZP_06263368.1| GTP-binding protein HflX [Propionibacterium acnes J139]
 gi|282583484|gb|EFB88864.1| GTP-binding protein HflX [Propionibacterium acnes J139]
          Length = 483

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 31/220 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQ---GKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK- 242
           + +  ++  + +     +HI      K  + IRN    + I+G++NAGKSSL N L +  
Sbjct: 227 TDRRRISHRIAVLRRRLTHIESTRASKRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAG 286

Query: 243 ---DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + A+   +  TTR   T     +G +  ++DT G          E    T  E   A
Sbjct: 287 VLVENALFATLDPTTRRATT----SDGRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMA 342

Query: 300 DLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE-------EYD 340
           D++L + + +    +                NI  I +  K D  S  T           
Sbjct: 343 DVLLHVVDADDPDPLGQVDAVRGVLSGIGASNIPEILVLNKIDRLSDETILTLRSTFPGA 402

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +L+S+ TGEG ++L+  I+ +L    +++   IP  +  L
Sbjct: 403 YLVSAHTGEGTDKLVEAIEDVLPIPSQRVDVVIPYARGDL 442


>gi|154494317|ref|ZP_02033637.1| hypothetical protein PARMER_03671 [Parabacteroides merdae ATCC
           43184]
 gi|154085761|gb|EDN84806.1| hypothetical protein PARMER_03671 [Parabacteroides merdae ATCC
           43184]
          Length = 296

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 79/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I+T    TTR  +   ++     +  SDT G+   +
Sbjct: 10  VNIVGNPNVGKSTLMNRLVGERISIITSKAQTTRHRIIGIVNTADMQIVYSDTPGVLHPN 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--KEISFPKN-----IDFIFIGTKSD---- 330
             +++  +  +   + +AD++L + ++  K  K   F +         + +  K D    
Sbjct: 70  YKLQESMLNFSQSALGDADVLLYVTDVVEKIDKNEEFLQKVQKVECPVLLLINKIDTTTQ 129

Query: 331 -----LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                L + + E         IS+ +   ++ +  +++ ++            + K   +
Sbjct: 130 PELEKLVAEWKELLPKAEIIPISALSNFNIDYVKRRVEDLMPESPPYFEKDALTDKPARF 189

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 190 FVTEIIR 196


>gi|229815365|ref|ZP_04445700.1| hypothetical protein COLINT_02411 [Collinsella intestinalis DSM
           13280]
 gi|229809145|gb|EEP44912.1| hypothetical protein COLINT_02411 [Collinsella intestinalis DSM
           13280]
          Length = 429

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 97/266 (36%), Gaps = 24/266 (9%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           + + T   R          L          L   ++       F + E       + + N
Sbjct: 122 LHARTREGRLQVQLAQLQYLLPRLRGMWSHLAKEQTRGGIGSRFGQGESQLEIDRRMIRN 181

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  L++++     +  +    RN    ++I + G++NAGKSSL N L    V +  D  
Sbjct: 182 RIAQLRHELREVEKRRDVQSKKRNDSQTFRIALTGYTNAGKSSLLNQLCGPSV-LAQDKL 240

Query: 252 GTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D  T  L L  G  V I+DT G  +       E  K T  EV +ADLIL + +I+ 
Sbjct: 241 FATLDPTTRSLSLPGGRNVTITDTVGFIQKLPHGLVEAFKSTLSEVRDADLILRVVDISD 300

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYST-------YTEEYDHLISSFTGEGL 351
                         +     +   + +  K D   +         +      S+ TGEG 
Sbjct: 301 ADYPRHVDAVEHVLDEVGAADQPAVTVYNKIDRLDSSVVESLRRRDPRAVFFSAVTGEGK 360

Query: 352 EELINKIKSILSNKFKKLPFSIPSHK 377
           EEL+N+I    S     +   IP  +
Sbjct: 361 EELLNRIIHEASACDAPISCEIPYRE 386


>gi|330999189|ref|ZP_08322908.1| ribosome biogenesis GTPase Era [Parasutterella excrementihominis
           YIT 11859]
 gi|329575389|gb|EGG56933.1| ribosome biogenesis GTPase Era [Parasutterella excrementihominis
           YIT 11859]
          Length = 303

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 79/203 (38%), Gaps = 23/203 (11%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            + +  E  R+GY + ++G  N GKS+L NAL  + V+I +  P TTRD +   L  +  
Sbjct: 5   KETEKSEDFRSGY-VAVIGRPNVGKSTLINALVGEKVSITSKKPQTTRDRIMGVLTTDNA 63

Query: 268 LVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKN 319
                DT G + +    +     +     + + D ++++ E    +        +     
Sbjct: 64  QYLFVDTPGFQTKHSSELLARMNQSVRSSLSDVDAVVMVIEATGWRPEDQVVLNLLSKDA 123

Query: 320 IDFIFIGTKSD----------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNK 365
            + I    K+D          L     E++       +S+     L+ L++ I+  L   
Sbjct: 124 KNVILAINKTDEVKESEAMLPLIKEAMEKFPFADVVPVSAEKTRQLDVLLDVIRKYLPEG 183

Query: 366 FKKLPFSIPSHKRHLYHLSQTVR 388
            K     I + K   +  ++ +R
Sbjct: 184 DKLYEDDIYTDKSPRFLAAEIIR 206


>gi|254230525|ref|ZP_04923896.1| GTP-binding protein Era [Vibrio sp. Ex25]
 gi|262393271|ref|YP_003285125.1| GTP-binding protein Era [Vibrio sp. Ex25]
 gi|151936950|gb|EDN55837.1| GTP-binding protein Era [Vibrio sp. Ex25]
 gi|262336865|gb|ACY50660.1| GTP-binding protein Era [Vibrio sp. Ex25]
          Length = 320

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 29  IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 88

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L+  L +        E+   K    N   +    K D   
Sbjct: 89  KRAINRLMNRAANSSLSDVNLVFFLVDGTHWTKDDEMVLTKLQKSNFPVVLCVNKVDNVQ 148

Query: 334 TYTEEYDHL--------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H+              IS+  G+ ++ L   +++ L       P    + +  
Sbjct: 149 DRNEVMLHMAEMSKKMDFVDVVPISAKQGKNIDVLRKHVRNHLPKATHHFPEEYVTDRSQ 208

Query: 380 LYHLSQTVR 388
            +  S+ VR
Sbjct: 209 RFMASEIVR 217


>gi|146089409|ref|XP_001470375.1| GTP-binding protein-like protein [Leishmania infantum]
 gi|134070408|emb|CAM68746.1| putative ras-like small GTPases [Leishmania infantum JPCM5]
          Length = 497

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 91/243 (37%), Gaps = 46/243 (18%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217
               ++ L HI +  + + D+    D+++ +       +  +++                
Sbjct: 182 LSALLEPLYHIHAMRKVENDW----DIEDLAMAGDEAAMEEIRD-----------RNCTD 226

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              ++ I+G +N+GK+SL N L   +     D   TTRD + I    +G  +K+ DTAG+
Sbjct: 227 RYIRVAIVGRTNSGKTSLVNRLVGYERNRAADESNTTRDPIEIACTYKGRKLKLIDTAGL 286

Query: 278 ----RETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISFP-----KNIDFIF 324
                 TD          +  E+  A +++++ +       K ++S       +   F+ 
Sbjct: 287 ARQRYRTDREFLSRIHSLSLNEIRYAHVVIVVFDATEGHPNKYDMSILHKVAQEGRPFVL 346

Query: 325 IGTKSDLY---STYTEEYDHLI---------------SSFTGEGLEELINKIKSILSNKF 366
              K D     S   E  D  I               S+ TG  L  L++++  +     
Sbjct: 347 CANKWDAVLDQSATAEAIDFKIKRQVQEVKYSNAVVVSAHTGMNLTLLMDQVLELYDTWN 406

Query: 367 KKL 369
           K++
Sbjct: 407 KRV 409



 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 27/204 (13%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
              ++ I+G  N+GKSSLFN L +         IV D  G TRD +     L+     + 
Sbjct: 27  QRLRVAIVGRMNSGKSSLFNLLCQDPTMPAKKNIVKDFNGITRDCVEAHAALDNLHFTVI 86

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIF 324
           DT G+      +  + ++  F  VE AD  + +  ++                K +    
Sbjct: 87  DTPGL------IGGKLVEEAFRTVETADAAIFVTAVDEDVSAEEHDLIQYLAAKKMPACL 140

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEG--------LEELINKIKSILSNKFKKLPFSIPSH 376
           +  K DL     E     + +  G G          E ++ + ++L   +         +
Sbjct: 141 LVNKMDLVPEEEESLVLDVYNRLGLGKAVPFSARKREGLDALSALLEPLYHIHAMRKVEN 200

Query: 377 KRHLYHLSQTVRYLEMASLNEKDC 400
              +  L+       M  + +++C
Sbjct: 201 DWDIEDLAMAGDEAAMEEIRDRNC 224


>gi|328950083|ref|YP_004367418.1| GTP-binding protein Era-like-protein [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450407|gb|AEB11308.1| GTP-binding protein Era-like-protein [Marinithermus hydrothermalis
           DSM 14884]
          Length = 299

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 22/174 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +    VA +T  P TTR  +          +   DT G+ +  
Sbjct: 11  VAIVGKPNVGKSTLLNTMLGVKVAPITPKPQTTRKTVRGIYTEGNRQIVFVDTPGLHKPA 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNIDFIFIGTKSDL 331
           D + +   ++ +  + + +LIL L ++           ++        +  + +G K D 
Sbjct: 71  DALGEYINEQVYEALADVNLILWLVDLRHPPTDEDRLVARALEPLVGRVPILLVGNKVDA 130

Query: 332 YSTYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                E  +               S+     +  L  +I ++L       P + 
Sbjct: 131 AKYPDEALEAYRALLPQIEEVRTLSALDERDVANLRAEILALLPEGPFFYPDTF 184


>gi|260771274|ref|ZP_05880201.1| GTP-binding protein Era [Vibrio furnissii CIP 102972]
 gi|260613871|gb|EEX39063.1| GTP-binding protein Era [Vibrio furnissii CIP 102972]
 gi|315179119|gb|ADT86033.1| GTP-binding protein Era [Vibrio furnissii NCTC 11218]
          Length = 321

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N +  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 30  VAIVGRPNVGKSTLLNNILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 89

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L+  + E     +  E+   K    N   +    K D   
Sbjct: 90  KRAINRLMNRAASSSLSDVNLVFFVVEGTHWTADDEMVLNKLKNANFPVVLCVNKVDNVK 149

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H++              S+  G+ +E L   ++  L       P    + +  
Sbjct: 150 DRNDVMLHMMELSNKMDFVDVVPISAKLGKNVEVLRKHVRDHLPKAVHHFPEEYVTDRSQ 209

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 210 RFMASEIIR 218


>gi|147678455|ref|YP_001212670.1| GTPase [Pelotomaculum thermopropionicum SI]
 gi|146274552|dbj|BAF60301.1| GTPase [Pelotomaculum thermopropionicum SI]
          Length = 434

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 92/261 (35%), Gaps = 20/261 (7%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            + T   R          L         +L+ +   I        + ++     +  +  
Sbjct: 130 RARTREGRLQVELAQLSYLLPRLTGLGGQLSRLGGGIGTRGPGETKLEMDRRRVRRRIAA 189

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +     ++       +          + I+G++NAGKS+L   L   DV +V D    T 
Sbjct: 190 LKKEIKEVRERRDLLRRNRKEVPFPLVAIVGYTNAGKSTLLKKLTGADV-LVEDKLFATL 248

Query: 256 DVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---K 311
           D +T  + L     + ++DT G  +          + T  EV  ADL+L + + +    +
Sbjct: 249 DPVTRRVVLPDNETILLTDTVGFIQNLPHHLVAAFRATLEEVMEADLLLHVVDASHPYME 308

Query: 312 KEISF---------PKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELIN 356
           ++I                 + +  K+DL      +   +      +S+  G G+E+L+ 
Sbjct: 309 EQIGAVNEVLASLGAAGKPLVMVYNKADLLPDAKFFREKSSPPAVAVSALKGWGMEDLLA 368

Query: 357 KIKSILSNKFKKLPFSIPSHK 377
            I   L  +  K  F IP  K
Sbjct: 369 AIARALPGRRIKASFFIPYRK 389


>gi|78358630|ref|YP_390079.1| GTP-binding protein Era [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78221035|gb|ABB40384.1| GTP-binding protein Era [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 308

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 80/206 (38%), Gaps = 28/206 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + ++G  NAGKS++ N+L  + VAIVT  P TTR+ +   L      V   DT GI + 
Sbjct: 11  WVALMGPPNAGKSTMMNSLLGQKVAIVTPKPQTTRNQIVGILTQPDAQVVFMDTPGIHQL 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------------SKKEISFPKNIDFIFI--G 326
              + +  ++  +  ++ AD+I+++ + N             +  I   ++     +   
Sbjct: 71  RGKMNRLLLQAAWQSMDGADVIMVVLDSNLYVRKPDFLDNDIEPLIEVIRHEKRPVVVAL 130

Query: 327 TKSD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            K D              L   +       +S+   +GL +++  IK  L       P  
Sbjct: 131 NKVDMFADKSRMLPLLEKLAEMWPAAEIFPVSALNDDGLRQMLAFIKGHLPVADPVFPDD 190

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEK 398
             S     +  ++ +R      L ++
Sbjct: 191 QVSTAPLRFMAAEIIREKLFLELRQE 216


>gi|329924033|ref|ZP_08279296.1| ribosome biogenesis GTPase Era [Paenibacillus sp. HGF5]
 gi|328940872|gb|EGG37180.1| ribosome biogenesis GTPase Era [Paenibacillus sp. HGF5]
          Length = 290

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 22/211 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + +AI++D P TTR+ +          V   DT GI +  
Sbjct: 1   MAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTTSDSQVVFLDTPGIHKRQ 60

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD--- 330
             +     +     +   +  L L + +           E         I +  K D   
Sbjct: 61  SKLGDYMNQTALSTLGEVEAALFLVDASEGIGGGDRYIAEQLQKIKTPIILVMNKIDKIE 120

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 L   Y + +D      IS+  G  +  L+ +I+  L    +  P    +     
Sbjct: 121 PPALLPLIEQYRKLHDFAEIVPISAKLGSNVNTLLEQIQKYLPPGPQYYPEDQVTDHPEQ 180

Query: 381 YHLSQTVRY-LEMASLNEKDCGLDIIAENLR 410
           +  ++ +R  +   +  E    + +  E++R
Sbjct: 181 FVCAELIREKILHMTREEVPHSIAVTIEDMR 211


>gi|254561470|ref|YP_003068565.1| GTP-binding protein [Methylobacterium extorquens DM4]
 gi|254268748|emb|CAX24709.1| GTP-binding protein [Methylobacterium extorquens DM4]
          Length = 326

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 22/202 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +QG+  E  R G+ + ++G  NAGKS+L NAL    V+IV+    TTR ++   +     
Sbjct: 23  AQGQPREETRAGF-VALIGVPNAGKSTLLNALVGAKVSIVSRKVQTTRALVRGIVMEGHA 81

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----N 319
            + + DT GI      +++  +   +    +AD I LL +    ++ + E    +     
Sbjct: 82  QIVLVDTPGIFAPKRRLDRAMVHSAWSGAADADAICLLIDARKGVDEEVETILRRLPEVK 141

Query: 320 IDFIFIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
              I I  K DL +                 E   LIS+  G+G+ +L   + + +    
Sbjct: 142 RPKILILNKIDLIARERLLELVAKLNAMVPFEDTFLISALKGDGIADLRKALAARMPPSP 201

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
              P    S        ++  R
Sbjct: 202 WLYPEDQISDAPLRMLAAEITR 223


>gi|218262399|ref|ZP_03476879.1| hypothetical protein PRABACTJOHN_02554 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223402|gb|EEC96052.1| hypothetical protein PRABACTJOHN_02554 [Parabacteroides johnsonii
           DSM 18315]
          Length = 296

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 79/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I+T    TTR  +   ++     +  SDT G+   +
Sbjct: 10  VNIVGNPNVGKSTLMNRLVGERISIITSKAQTTRHRIIGIVNTADMQIVYSDTPGVLHPN 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--KEISFPKN-----IDFIFIGTKSD---- 330
             +++  +  +   + +AD++L + ++  K  K   F +         + +  K D    
Sbjct: 70  YKLQESMLNFSQSALGDADVLLYVTDVVEKIDKNEEFLQKVQKVECPVLLLINKIDTTTQ 129

Query: 331 -----LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                L + + E         IS+ +   ++ +  +++ ++            + K   +
Sbjct: 130 QELEKLVAEWKELLPKAEIIPISALSNFNIDYVKRRVEDLMPESPPYFEKDALTDKPARF 189

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 190 FVTEIIR 196


>gi|302875565|ref|YP_003844198.1| small GTP-binding protein [Clostridium cellulovorans 743B]
 gi|307690094|ref|ZP_07632540.1| small GTP-binding protein [Clostridium cellulovorans 743B]
 gi|302578422|gb|ADL52434.1| small GTP-binding protein [Clostridium cellulovorans 743B]
          Length = 411

 Score = 83.4 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 20/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I + G  NAGKSS+ NA+  + ++IV+DI GTT D +   +++       I DTAG
Sbjct: 10  ERVHIALFGKRNAGKSSVINAITNQQLSIVSDIEGTTTDPVYKSIEILPIGPCVIIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFP---KNIDFIFIGTK 328
           + +  ++ +     +T   +   D+ L++ +         KEI      K I  + +  K
Sbjct: 70  LDDVGELGDLR-RNKTLEVLNKTDIALIVADSTKGITGYDKEIIAEVKKKKIPLMILMNK 128

Query: 329 SD-------LYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKK 368
            D             +E+D     +S+ T  G+ E+  KI  ++    + 
Sbjct: 129 IDERNFEVNEIENLKKEFDCEVLKVSAVTKVGINEVKEKISFLIPQDKEN 178


>gi|225024666|ref|ZP_03713858.1| hypothetical protein EIKCOROL_01548 [Eikenella corrodens ATCC
           23834]
 gi|224942555|gb|EEG23764.1| hypothetical protein EIKCOROL_01548 [Eikenella corrodens ATCC
           23834]
          Length = 304

 Score = 83.4 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 77/212 (36%), Gaps = 22/212 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           S  K     R G+ + I+G  N GKS+L N L  + ++I +    TTR  +T     E  
Sbjct: 7   SNTKHPTAFRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRHKITGVYTDERS 65

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLKEINSKKEIS------FPKNI 320
                DT G +        + + +     +   D++  + E     E         PK++
Sbjct: 66  QFIFVDTPGFQTRHRNALNDRLNQNVTEAIGGVDVVAFVVEAMRFSEADRAVIRLLPKHL 125

Query: 321 DFIFIGTKSD----------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKF 366
             I +  K D             T   E+D      +S+  G  + EL+ +++  L    
Sbjct: 126 PVILVVNKIDRANSKAELEEFIETVCREFDFAGAEAVSAKHGLRIGELLARLRPHLPESV 185

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
              P    + +   +  ++ VR      L E+
Sbjct: 186 PLYPEDAVTDRSARFLAAEIVREKLFRHLGEE 217


>gi|17987569|ref|NP_540203.1| GTP-binding protein Era [Brucella melitensis bv. 1 str. 16M]
 gi|256044359|ref|ZP_05447263.1| GTP-binding protein Era [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563711|ref|ZP_05834197.1| GTP-binding protein era [Brucella melitensis bv. 1 str. 16M]
 gi|265990774|ref|ZP_06103331.1| GTP-binding protein era [Brucella melitensis bv. 1 str. Rev.1]
 gi|21263580|sp|Q8YG75|ERA_BRUME RecName: Full=GTPase Era
 gi|17983273|gb|AAL52467.1| gtp-binding protein era [Brucella melitensis bv. 1 str. 16M]
 gi|260153727|gb|EEW88819.1| GTP-binding protein era [Brucella melitensis bv. 1 str. 16M]
 gi|263001558|gb|EEZ14133.1| GTP-binding protein era [Brucella melitensis bv. 1 str. Rev.1]
          Length = 311

 Score = 83.4 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++          + + DT G
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIVLVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTK 328
           I      +++  +   +   ++AD+IL++ +       N++  +   K+     + +  K
Sbjct: 77  IFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAEALLESMKDVRQKKVLVLNK 136

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D                    +   +IS+  G G ++L   +   + N     P    S
Sbjct: 137 VDRVDPPVLLSLAQKANGLVPFDRTFMISALNGSGCKDLAKYLAESVPNGPWYYPEDQIS 196

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+E+
Sbjct: 197 DMPMRQLAAEITREKLYLRLHEE 219


>gi|303257000|ref|ZP_07343014.1| GTP-binding protein Era [Burkholderiales bacterium 1_1_47]
 gi|302860491|gb|EFL83568.1| GTP-binding protein Era [Burkholderiales bacterium 1_1_47]
          Length = 303

 Score = 83.4 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 79/203 (38%), Gaps = 23/203 (11%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            + +  E  R+GY + ++G  N GKS+L NAL  + V+I +  P TTRD +   L  +  
Sbjct: 5   KETEKSEDFRSGY-VAVIGRPNVGKSTLINALVGEKVSITSKKPQTTRDRIMGVLTTDNA 63

Query: 268 LVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKN 319
                DT G + +    +     +     + + D ++++ E    +        +     
Sbjct: 64  QYLFVDTPGFQTKHSSELLARMNQSVRSSLSDVDAVVMVIEATGWRPEDQVVLNLLSKDA 123

Query: 320 IDFIFIGTKSD----------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNK 365
            + I    K+D          L     E++       +S+     L+ L++ I+  L   
Sbjct: 124 KNVILAINKTDEVKESEAMLPLIKESMEKFPFADVVPVSAEKTRQLDVLLDVIRKYLPEG 183

Query: 366 FKKLPFSIPSHKRHLYHLSQTVR 388
            K     I + K   +  ++ +R
Sbjct: 184 DKLYEDDIYTDKSPRFLAAEIIR 206


>gi|260578248|ref|ZP_05846164.1| GTP-binding protein Era [Corynebacterium jeikeium ATCC 43734]
 gi|258603550|gb|EEW16811.1| GTP-binding protein Era [Corynebacterium jeikeium ATCC 43734]
          Length = 336

 Score = 83.4 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 24/237 (10%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             F     + +   +  +      + +  E  R+G+ +  +G  N GKS+L NAL  + +
Sbjct: 11  DPFDPGAGMPEGAGVAPEEMEVPEEYRAPEGFRSGF-VSFVGRPNTGKSTLTNALVGEKI 69

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI  D P TTR  +   +  E   + + DT G+     ++ +   +       + D+I +
Sbjct: 70  AITADQPETTRHPIRGIVHREDAQIILVDTPGLHRPRTLLGERLNEVVKETYSDVDVIAM 129

Query: 305 LKEINSK----------KEISFPKNIDFIFIGTKSD-------------LYSTYTEEYDH 341
               + K             S       I + TK D             L+         
Sbjct: 130 CVPADEKIGPGDRWIVDAVRSVAPKTPLIGVVTKLDKVSKDQVGAQLLALHELLDGADVV 189

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            +SS     L+ L++ ++  L    K  P    +       +++ +R   +  L+E+
Sbjct: 190 PVSSTKQVQLDVLLDVLRDQLPEGPKFYPDDHVTDDDRDTRMAELIREAALEGLHEE 246


>gi|261329213|emb|CBH12192.1| GTP-binding protein, putative [Trypanosoma brucei gambiense DAL972]
          Length = 576

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 74/193 (38%), Gaps = 34/193 (17%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---------------NGYKIVILGHSNA 230
           +   +  +     + NDI+  +   K  E  R                  +I I+G  N+
Sbjct: 59  HADWRTQMKRSGSILNDITPALPDTKRTEEQRRRVAGWRPVVKLLGDQRLRIAIVGRMNS 118

Query: 231 GKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           GKSSLFN L  +        +V D  G TRD +     LEG    I DT G+      V+
Sbjct: 119 GKSSLFNLLRLEPTVPGRSNVVRDFDGITRDSVEGQAQLEGMHFTIIDTPGM------VQ 172

Query: 286 KEGIKRTFLEVENADLILLLKEINS---KKEISF-----PKNIDFIFIGTKSDLYSTYTE 337
              ++  F  VE AD  + +  ++     +E+S       K++  + +  K DL     E
Sbjct: 173 GRMVEEAFRTVETADAAIFVTAVDEDIMPEELSLMQYLHLKHMPVVLLANKMDLIQEEEE 232

Query: 338 EYDHLISSFTGEG 350
           E      +  G G
Sbjct: 233 EAVLDRYNSLGFG 245



 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 87/228 (38%), Gaps = 30/228 (13%)

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSM--EGMSGELSSLYGQWIDKLTHIRSFIEAD 175
               K+DL++ E    ++     +    ++           +    ++ L HI +  + +
Sbjct: 219 LLANKMDLIQEEEEEAVLDRYNSLGFGNAIPFSARRKSGLEMLAAVLEPLYHIHAMHKVE 278

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
            D+    D+++ + +   + +  ++                    +I I+G +N+GKSSL
Sbjct: 279 NDW----DIEDLAMQGDESAMEEIRE-----------RNCSDRFIRIAIVGRTNSGKSSL 323

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR---- 291
            N L   +     D   +TRD + +    +G  +K+ DTAG+       +++ I R    
Sbjct: 324 VNRLVGFERNRAVDEKNSTRDPVELPCSYKGRKLKLIDTAGLARHRYRADRDFIGRIHGL 383

Query: 292 TFLEVENADLILLLKEINSKKEISF---------PKNIDFIFIGTKSD 330
           +  E+  A +++++ +        +          +   F+    K D
Sbjct: 384 SVNEIRFAHVVIVVFDATEGHPNKYDMAVLHSVAAEGRPFLLCANKWD 431


>gi|187934744|ref|YP_001887658.1| GTP-binding protein [Clostridium botulinum B str. Eklund 17B]
 gi|187722897|gb|ACD24118.1| GTP-binding protein [Clostridium botulinum B str. Eklund 17B]
          Length = 395

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  NAGKSSL NAL  + +++V+D PGTT D ++  ++L     V I DTAG
Sbjct: 8   NRLHISIFGKRNAGKSSLINALTNQPLSLVSDTPGTTTDPVSKAMELLPLGPVVIIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFP-----KNIDFIFIGTK 328
           + +T D+     +++T   +   DL +L+    + N + E  +      KNI  I +  K
Sbjct: 68  LDDTGDLGTLR-VEKTKEVMLKTDLAVLVFSAEDNNIENEKEWLKDLKQKNIPVIGVINK 126

Query: 329 SDL----YSTYTEEYDHLI---SSFTGEGLEELINKI 358
            DL         +E+D      SS     + +    +
Sbjct: 127 IDLEMSNLELLQKEFDIPFVEISSREKINIGKFKELL 163


>gi|28899345|ref|NP_798950.1| GTP-binding protein Era [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839957|ref|ZP_01992624.1| GTP-binding protein Era [Vibrio parahaemolyticus AQ3810]
 gi|260365942|ref|ZP_05778432.1| GTP-binding protein Era [Vibrio parahaemolyticus K5030]
 gi|260878964|ref|ZP_05891319.1| GTP-binding protein Era [Vibrio parahaemolyticus AN-5034]
 gi|260898319|ref|ZP_05906815.1| GTP-binding protein Era [Vibrio parahaemolyticus Peru-466]
 gi|260899640|ref|ZP_05908035.1| GTP-binding protein Era [Vibrio parahaemolyticus AQ4037]
 gi|31340053|sp|Q87LP0|ERA_VIBPA RecName: Full=GTPase Era
 gi|28807581|dbj|BAC60834.1| GTP-binding protein Era [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746516|gb|EDM57505.1| GTP-binding protein Era [Vibrio parahaemolyticus AQ3810]
 gi|308085246|gb|EFO34941.1| GTP-binding protein Era [Vibrio parahaemolyticus Peru-466]
 gi|308090470|gb|EFO40165.1| GTP-binding protein Era [Vibrio parahaemolyticus AN-5034]
 gi|308110555|gb|EFO48095.1| GTP-binding protein Era [Vibrio parahaemolyticus AQ4037]
 gi|308113214|gb|EFO50754.1| GTP-binding protein Era [Vibrio parahaemolyticus K5030]
          Length = 320

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 29  IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 88

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L+  L +        E+   K    N   +    K D   
Sbjct: 89  KRAINRLMNRAANSSLSDVNLVFFLVDGTHWTKDDEMVLTKLQKSNFPVVLCVNKVDNVQ 148

Query: 334 TYTEEYDHL--------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H+              IS+  G+ ++ L   +++ L       P    + +  
Sbjct: 149 DRNEVMLHMAEMSKKMDFVDVVPISAKQGKNIDVLRKHVRNHLPKATHHFPEEYVTDRSQ 208

Query: 380 LYHLSQTVR 388
            +  S+ VR
Sbjct: 209 RFMASEIVR 217


>gi|255027717|ref|ZP_05299703.1| GTP-binding protein Era [Listeria monocytogenes FSL J2-003]
          Length = 301

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   +  
Sbjct: 1   MSEPFKSGF-VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFI 323
            DT GI +    +    +K      +  DLI  + + +       +  +   KN      
Sbjct: 60  IDTPGIHKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIVEKLKNVQTPVF 119

Query: 324 FIGTKSDLYS 333
            +  K DL +
Sbjct: 120 LLINKIDLIA 129


>gi|300814367|ref|ZP_07094638.1| hydrogenase maturation GTPase HydF [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511475|gb|EFK38704.1| hydrogenase maturation GTPase HydF [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 390

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 17/160 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  N+GKSSL N LA ++V+IV+D  GTT D +   ++  G   V I DT G
Sbjct: 7   NRIHIGIFGKVNSGKSSLINLLAAREVSIVSDREGTTTDSVYKSMEFLGLGPVTIMDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPKNIDFIFIGTKSDLY 332
           + +    + K   +R   ++E AD+ ++L          + I   K    + +  K D+ 
Sbjct: 67  VCDKS-FLGKLREQRLERDIEKADIAIILFSDSDIARELELIKKLKKSKILLVINKVDIL 125

Query: 333 STYTEEYDHLI-----------SSFTGEGLEELINKIKSI 361
           S   +E  +             S+    G+EEL  ++  +
Sbjct: 126 SAQEKENIYKNLKDLPFKIIEISTKEKNGIEELKKELVKL 165


>gi|227495843|ref|ZP_03926154.1| possible GTP-binding protein HflX [Actinomyces urogenitalis DSM
           15434]
 gi|226834600|gb|EEH66983.1| possible GTP-binding protein HflX [Actinomyces urogenitalis DSM
           15434]
          Length = 553

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 88/237 (37%), Gaps = 23/237 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + + +  L+ +I +     + K G   R     + I G++NAGKSSL N L   
Sbjct: 277 ELDRRRIRDRMAKLRREIKAMAPSREVKRGSRRRGPIPSVAIAGYTNAGKSSLMNRLTDA 336

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            + +   +  T    +      +G L  ++DT G          E  + T  EV  AD++
Sbjct: 337 GLMVQDALFATLDPTVRKAETSDGRLYTLTDTVGFVRNLPHELIEAFRSTLEEVAGADVL 396

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           + + +                  EI     +  + +  K+DL    T            +
Sbjct: 397 VHVVDAAHPDPLSQIAAVRAVLAEIPGALEVPELIVLNKADLADAVTLAALRTRLPEAVI 456

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           +S+ TGEGL+EL ++I+ +L      +   IP  +  L         ++     E  
Sbjct: 457 VSAATGEGLDELRSRIEEMLPRPDVPVDLVIPYSRGDLVAKVHADGEIDAIEYVEAG 513


>gi|269120355|ref|YP_003308532.1| GTP-binding protein Era [Sebaldella termitidis ATCC 33386]
 gi|268614233|gb|ACZ08601.1| GTP-binding protein Era [Sebaldella termitidis ATCC 33386]
          Length = 293

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 22/174 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS++ N L ++ VAIV++  GTTRD +   ++         DT GI +  
Sbjct: 6   IAIVGRPNVGKSTMMNKLIEEKVAIVSNKSGTTRDRIKGIVNKGENQYIFMDTPGIHKPR 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
            ++ +         ++  D I+ L +   +         +     N   + +  K D  S
Sbjct: 66  HLLGEHMTNVALETLKGVDAIMFLLDGTQEISTGDEFVNDHVKAVNTPVVLVINKIDKLS 125

Query: 334 ---------TYTEEYDHLISSFT-----GEGLEELINKIKSILSNKFKKLPFSI 373
                       E+        T     G G+ ++ ++++  L++     P  +
Sbjct: 126 DQEIQDKLLEIKEKLGDFDKIITIAAEYGIGMHKIYDELREYLTSDVWYYPEDM 179


>gi|120609885|ref|YP_969563.1| GTP-binding protein Era [Acidovorax citrulli AAC00-1]
 gi|120588349|gb|ABM31789.1| GTP-binding protein Era [Acidovorax citrulli AAC00-1]
          Length = 344

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    +        DT G +   
Sbjct: 54  IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTMGAAQFVFVDTPGFQTKH 113

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSD 330
                + + +T +  + + DLIL + E       ++K    F   I  + I  K D
Sbjct: 114 STALNKSLNKTVMGAIGDVDLILFVVEAGSFTLADAKVLSLFKPGIPTLLIANKLD 169


>gi|42523316|ref|NP_968696.1| GTP-binding protein HflX [Bdellovibrio bacteriovorus HD100]
 gi|39575522|emb|CAE79689.1| GTP-binding protein HflX [Bdellovibrio bacteriovorus HD100]
          Length = 421

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 96/269 (35%), Gaps = 18/269 (6%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +  ++    G W+D L+     I          +      +E +  I      +  +
Sbjct: 131 LAQLLDQMPRNVGAWLDSLSRQGGGIGTRGPGETALENDRRRIRERVALIKKKLESVRQN 190

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +            ++G++N+GKSS+ N L    V     +  T           + 
Sbjct: 191 RAQHRQSRRRHEIPSFALVGYTNSGKSSILNRLTGAQVMTKNQVFATLDPTTRKIFLPDA 250

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----- 318
               ++DT G          E  K T  E   AD++L + +++S   +++I   +     
Sbjct: 251 PPAVVTDTVGFIRKLPTQLIEAFKATLEESSEADVLLHVVDLSSPNMERQIEVVEALIKE 310

Query: 319 ----NIDFIFIGTKSDLYSTYTEEYDHLI-----SSFTGEGLEELINKIKSILSNKFKKL 369
               +   I +  K D+     +           S+ TG+G+E+L   +   +S   + +
Sbjct: 311 FNWQDKKIIHVFNKCDVAPLERQFRVKAYPRVFVSALTGQGMEQLKKLMAQTVSEMQQDV 370

Query: 370 PFSIPSHKRH-LYHLSQTVRYLEMASLNE 397
               P  + + ++ L +  + L   +  E
Sbjct: 371 QLYFPRAEEYKIFDLGREAQILRKETATE 399


>gi|308048450|ref|YP_003912016.1| GTP-binding protein Era [Ferrimonas balearica DSM 9799]
 gi|307630640|gb|ADN74942.1| GTP-binding protein Era [Ferrimonas balearica DSM 9799]
          Length = 302

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 70/191 (36%), Gaps = 24/191 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNRLLGQKVSITSRKPQTTRHRIMGIHTEGAYQTIFVDTPGLHVEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK------NIDFIFIGTKSD- 330
              + +   +     + + ++++++ E     +  ++   K          + +  K D 
Sbjct: 71  KRAINRLMNRAAASSIGDVEMVIMMVEGTKWTADDQMVLNKIRRGAETRKTVLVINKVDQ 130

Query: 331 -------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                        L   +  +    +S+  G+ ++ LI   +  L       P    + +
Sbjct: 131 IKEKADLIPHLQWLQEQFPFDAIIPMSAGKGDDIQPLITMAQKELPECIHYFPEDYVTDR 190

Query: 378 RHLYHLSQTVR 388
              +  ++ VR
Sbjct: 191 SQRFMAAEIVR 201


>gi|311742267|ref|ZP_07716076.1| GTP-binding protein HflX [Aeromicrobium marinum DSM 15272]
 gi|311313895|gb|EFQ83803.1| GTP-binding protein HflX [Aeromicrobium marinum DSM 15272]
          Length = 458

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 105/302 (34%), Gaps = 32/302 (10%)

Query: 136 SSETEMQRRLSMEGMSGE-LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           S+E + Q  L+      + L    G    +     +  E        E       + +  
Sbjct: 152 SAEGKAQVELAQLQYQTQRLRGWGGNLSRQAGGRAAGGEGIGGRGPGETKLETDRRRIQA 211

Query: 195 DILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK----DVAIV 247
            +  L+ ++          K          + I G++NAGKSSL N L       + A+ 
Sbjct: 212 KMAKLRRELKMLSVTRETKKANRRRHQIPSVAIAGYTNAGKSSLLNRLTDAGVLVEDALF 271

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
             +  TTR   T     +G +  +SDT G          E  + T  EV  +DL+L + +
Sbjct: 272 ATLDPTTRRTQT----SDGRVYTMSDTVGFVRHLPHQLVEAFRSTLEEVAESDLVLHVVD 327

Query: 308 INSKKEISFPK------------NIDFIFIGTKSDLYST-------YTEEYDHLISSFTG 348
            +                      +  I +  K+D             E +  ++S+ TG
Sbjct: 328 GSHPDPAGQIAAVREVFADVDALGVPEIIVVNKADAADPTVIRQLLAREPHAVVVSARTG 387

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAE 407
           EG++EL++ I++ L     ++   +P  +  L +       +E          +  ++A 
Sbjct: 388 EGIDELLDAIEADLPRPASRIEVVLPYARGDLLNQIHATGEIESIEHEGDGTHVTALVAA 447

Query: 408 NL 409
            L
Sbjct: 448 EL 449


>gi|303245647|ref|ZP_07331930.1| small GTP-binding protein [Desulfovibrio fructosovorans JJ]
 gi|302492910|gb|EFL52775.1| small GTP-binding protein [Desulfovibrio fructosovorans JJ]
          Length = 403

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 18/169 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I  +G  NAGKSSL NA+  ++VAIV+D  GTT D +    +L     V   DTAG+ 
Sbjct: 14  LVITFVGRRNAGKSSLINAVTGQEVAIVSDFAGTTTDPVAKPYELLPLGPVTFYDTAGLD 73

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEI---SFPKNIDFIFIGTKSDL 331
           +  ++     +  T   +   D+ +++ +     +++++I        I  + +  K+DL
Sbjct: 74  DVGELGALR-VAATRKVLWRTDIAVVVADAAGLTDAERDIIADIRRLEIPILLVCNKADL 132

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
            +    +              S+ TGEG  E+   + ++   +  + P 
Sbjct: 133 AAPSEADLTWCRDQGLRTVVASAATGEGATEVKEALIALAPPEAVREPV 181


>gi|294788553|ref|ZP_06753795.1| GTP-binding protein Era [Simonsiella muelleri ATCC 29453]
 gi|294483430|gb|EFG31115.1| GTP-binding protein Era [Simonsiella muelleri ATCC 29453]
          Length = 308

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 71/206 (34%), Gaps = 24/206 (11%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
             ++ +  +  R G+ I I+G  N GKS+L N L  + ++I +    TTR  +T      
Sbjct: 7   LANEAQATQNYRCGF-IAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRHKVTGIYTDN 65

Query: 266 GYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLL------KEINSKKEISFPK 318
                  DT G + +  + +           +   D I  +       + +       PK
Sbjct: 66  TAQFVFVDTPGFQTDHRNALNDRLNLNVTEAMNGVDAIAFVLEAMRFTDADRTVLKQLPK 125

Query: 319 NIDFIFIGTKSD------------LYSTYTEEYDH----LISSFTGEGLEELINKIKSIL 362
           N   + +  K D                   E++     ++S+  G  +  L+  +K  L
Sbjct: 126 NTPVVLVVNKIDKDKAKDKLALNAFIEQVRAEFEFVAVEVVSAKHGLRIANLLETLKPFL 185

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVR 388
                  P  + + K   +   + VR
Sbjct: 186 PESVPMYPEDMVTDKSSRFLAMEIVR 211


>gi|307300896|ref|ZP_07580665.1| GTP-binding protein Era [Sinorhizobium meliloti BL225C]
 gi|307320713|ref|ZP_07600125.1| GTP-binding protein Era [Sinorhizobium meliloti AK83]
 gi|306893640|gb|EFN24414.1| GTP-binding protein Era [Sinorhizobium meliloti AK83]
 gi|306903851|gb|EFN34437.1| GTP-binding protein Era [Sinorhizobium meliloti BL225C]
          Length = 309

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 83/203 (40%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G +NAGKS+L N L    V+IV+    TTR ++          +   DT G
Sbjct: 16  RSGF-VALIGATNAGKSTLVNRLVGAKVSIVSHKVQTTRAIIRGIAIHGSAQIVFMDTPG 74

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTK 328
           I +    +++  +   +   ++ADLI+LL +       +++  +   K  +   + +  K
Sbjct: 75  IFKPRRRLDRAMVTTAWGGAKDADLIMLLIDSERGIKGDAEAILEGLKEVHQPKVLVLNK 134

Query: 329 SDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D                    E   +IS+ TG G E++++ +   L       P    S
Sbjct: 135 VDQVRREDLLKLAAAANDVVAFERTFMISALTGSGCEDVMDYLAETLPEGPWYYPEDQIS 194

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+++
Sbjct: 195 DLPMRQLAAEITREKLFLRLHQE 217


>gi|296444864|ref|ZP_06886826.1| GTP-binding protein Era [Methylosinus trichosporium OB3b]
 gi|296257532|gb|EFH04597.1| GTP-binding protein Era [Methylosinus trichosporium OB3b]
          Length = 312

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 22/167 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N L    V+IV+    TTR ++          + + DT G
Sbjct: 18  RCGF-VALVGAPNAGKSTLLNQLVGAKVSIVSRKAQTTRALVRGIAISGESQIILVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           I      +E+  +        +AD ++LL +     +    +        +   I +  K
Sbjct: 77  IFAPKRRLERAMVASALSGAGDADAVVLLIDARRGLDAEVEEIIAKLNELSAPKILVLNK 136

Query: 329 SD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSIL 362
            D         L +  T + D    ++IS+  G+G+ +L+ K+ S++
Sbjct: 137 VDVVPRESLLGLTAAVTRQADFAETYMISALNGDGVPDLLAKLASMM 183


>gi|254496731|ref|ZP_05109592.1| GTP binding protein HflX [Legionella drancourtii LLAP12]
 gi|254354047|gb|EET12721.1| GTP binding protein HflX [Legionella drancourtii LLAP12]
          Length = 418

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 101/286 (35%), Gaps = 24/286 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +E + 
Sbjct: 114 RARTFEGKLQVELAQLQHLSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRERIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     Q +          + ++G++NAGKS+LFNAL  + +  V +    T
Sbjct: 173 YINRRLEKVRCSRDQNRQARRKAAMPTVSLVGYTNAGKSTLFNALTGERI-YVANQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     L L G   V ++DT G          E  + T  E + ADL+L + +I+    
Sbjct: 232 LDPTMRQLSLPGASGVILADTVGFIRDLPHHLVEAFRATLEETQQADLLLHVIDISDPHW 291

Query: 313 -----------EISFPKNIDFIFIGTKSDLYSTYTEEYDH-------LISSFTGEGLEEL 354
                      +     +I  I +  K DL   +  + D+        IS+    GL+ L
Sbjct: 292 RDTVFSVQQVLDELGVNDIPVIQVFNKIDLQEGWEAKIDYNQEWCKVWISAAANIGLDLL 351

Query: 355 INKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKD 399
              I + L          + P   +    L Q    L  +  +E D
Sbjct: 352 KEAISTQLHGAVLIEDVVLKPVQAKLRAQLYQLGAILHESLSDEGD 397


>gi|326794406|ref|YP_004312226.1| GTP-binding protein Era-like-protein [Marinomonas mediterranea
           MMB-1]
 gi|326545170|gb|ADZ90390.1| GTP-binding protein Era-like-protein [Marinomonas mediterranea
           MMB-1]
          Length = 339

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
             +ED+   S+ +   +   +  + S      +  EI   G+ + I+G  N GKS+L N 
Sbjct: 11  DNQEDLVQDSAAQEHAEYEGVSGENSGQEEDYQ--EITHCGF-VAIVGRPNVGKSTLMNH 67

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVE 297
           +  + ++I +  P TTRD +              DT G+       + +   K     ++
Sbjct: 68  ILGQKLSITSRKPQTTRDQILGVKTEGSIQTIYVDTPGLHLGQQKAINRFMNKTATAALK 127

Query: 298 NADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD--------------LYSTYT 336
           + D++L + +      + E    K        + +  K D              L     
Sbjct: 128 DVDVVLFVIDAERWTDEDESVLQKVQYAQCPVVLVVNKVDNLDEKDELLPKLAALSEKME 187

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
                 IS+   + L+ L N ++S +    +  P    +++   +  ++ VR      L 
Sbjct: 188 FAQIVPISALRNKNLDRLENLVESYIPEGTQYYPEDQITNRSSRFLAAEIVREKITRQLG 247

Query: 397 EKDCGLDII 405
            ++   ++ 
Sbjct: 248 -QEVPYEVA 255


>gi|34557655|ref|NP_907470.1| GTP-binding protein Era [Wolinella succinogenes DSM 1740]
 gi|34483372|emb|CAE10370.1| GTP-BINDING PROTEIN [Wolinella succinogenes]
          Length = 299

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 75/186 (40%), Gaps = 19/186 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L  + +A+V+     TR  +   +  +   +   DT G+   +
Sbjct: 13  VAVVGRPNAGKSTLLNWLVGEKLAMVSHKANATRKRMKFIIPHQEAQIIFVDTPGLHHQE 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKNIDFIFIGTKSD------ 330
            ++ +  ++     + + DLIL L  ++      ++ +   +    + + +K D      
Sbjct: 73  KLLNQFMLQEALKAIGDCDLILFLAPVSDSISHYEEFLRVSEGKKHLLLLSKIDTVDNGK 132

Query: 331 ------LYSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                  Y+ Y E Y+    +S   G G E ++++    +          I + +     
Sbjct: 133 LLQKIAQYAPYAESYEALIPVSVKKGVGKEAILSETAKQMPPSPPLFEEDILTTENFRQL 192

Query: 383 LSQTVR 388
             + +R
Sbjct: 193 YKELIR 198


>gi|254442831|ref|ZP_05056307.1| GTP-binding proten HflX [Verrucomicrobiae bacterium DG1235]
 gi|198257139|gb|EDY81447.1| GTP-binding proten HflX [Verrucomicrobiae bacterium DG1235]
          Length = 435

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 97/260 (37%), Gaps = 24/260 (9%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E   ++++  M   L  L   W            A      + +  +   ++ +      
Sbjct: 125 EASLQVALARMEYSLPRLRRAWTHLSRQRGGGTGARGQGETQLEADSRMIRDRIAITKKE 184

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             ++  H    +   + +    + I+G++NAGKSSL N +   DV +  D    T D  T
Sbjct: 185 LKEVIQHRHVQRAKRLRKPVPTVAIVGYTNAGKSSLLNTMTDSDV-LAADKLFATLDPTT 243

Query: 260 IDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------- 311
             L+L+    V ++DT G          E  K T  E   ADL++ + ++ +        
Sbjct: 244 RRLELDNSQHVLVTDTVGFVRRLPHRLVEAFKATLEEAVVADLLIHVVDVTNPDAEKHFQ 303

Query: 312 ------KEISFPKNIDFIFIGTKSDLYST--------YTEEYDHLISSFTGEGLEELINK 357
                 KEI   KN     +  K D            +T +    IS+ TGEG+ EL   
Sbjct: 304 TTMEVLKEIEADKNPML-VVFNKIDALEDPSDRERFMFTHKDALYISANTGEGIAELKET 362

Query: 358 IKSILSNKFKKLPFSIPSHK 377
           I   L+ KFK     IP  +
Sbjct: 363 IAHHLNAKFKSKELLIPHER 382


>gi|330813897|ref|YP_004358136.1| GTP-binding protein EngA [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486992|gb|AEA81397.1| GTP-binding protein EngA [Candidatus Pelagibacter sp. IMCC9063]
          Length = 267

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 11/125 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I+G  N GKS+ FN +  K+++ V D PGTT+DV++         +   DT G+++
Sbjct: 3   INISIVGKPNVGKSTFFNKIFSKNISKVADEPGTTKDVISESFLFGNEELVFHDTGGLKK 62

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
                D  +    K     + N+ +++ + + N K          +   K    I I  K
Sbjct: 63  KAKSKDENQSYITKECLTAINNSSIVIFMMDANDKFTKNDKQICRMILNKFKTLIVIINK 122

Query: 329 SDLYS 333
           +DL  
Sbjct: 123 ADLIK 127


>gi|184201224|ref|YP_001855431.1| putative GTP-binding protein HflX [Kocuria rhizophila DC2201]
 gi|183581454|dbj|BAG29925.1| putative GTP-binding protein HflX [Kocuria rhizophila DC2201]
          Length = 552

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 116/337 (34%), Gaps = 40/337 (11%)

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG-KIDLLEA 128
           P P ++ G         G    +  ++        +  A      RRA E+  K+ +++ 
Sbjct: 164 PDPGTYLG--------SGKALELKDVVAATGADTVIVDAELAPSQRRALEDVVKVKVIDR 215

Query: 129 ESLADLISSETEMQ----RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF----SE 180
             L   I ++         ++ +  +   +      W + L+       A  +       
Sbjct: 216 TGLILDIFAQHAKSKEGKAQVELAQLE-YMLPRLRGWGESLSRQAGGRAASGEGIGSRGP 274

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFN 237
            E       + +   +  L+ +I++     +   + R       + I G++NAGKSSL N
Sbjct: 275 GETKIELDRRRIRQRMAKLRREIAAMKPARETKRLNRRRNAVPSVAIAGYTNAGKSSLLN 334

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L    V +   +  T    +      +G    ++DT G   +      E  + T  EV 
Sbjct: 335 RLTDAGVLVENALFATLDPTVRKAQTPDGIGYTLADTVGFVRSLPTQLVEAFRSTLEEVA 394

Query: 298 NADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYT-------EE 338
           +AD+I+ + + +        K            +I  I    KSD+            E 
Sbjct: 395 DADVIVHVVDASHPDPEGQLKAVRDVLTDVGANDIPEIVALNKSDIADPVVLARLRNHES 454

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
               +S+ TGEG+EEL   I + +      L   +P 
Sbjct: 455 PSVAVSARTGEGIEELRRMISAAIPRPNHDLDLLVPY 491


>gi|255014875|ref|ZP_05287001.1| GTP-binding protein Era [Bacteroides sp. 2_1_7]
 gi|256840957|ref|ZP_05546464.1| GTP-binding protein Era [Parabacteroides sp. D13]
 gi|256736800|gb|EEU50127.1| GTP-binding protein Era [Parabacteroides sp. D13]
          Length = 297

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 79/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I+T    TTR  +   ++ +   +  SDT G+   +
Sbjct: 11  VNIVGNPNVGKSTLMNRLVGERISIITSKAQTTRHRIMGIVNTDDMQIVYSDTPGVLRPN 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPK-----NIDFIFIGTKSD---- 330
             +++  +  +   + +AD++L + ++     K   F           + +  K D    
Sbjct: 71  YKLQESMLNFSQSALGDADVLLYVTDVVETIDKNNEFLARVQSIECPVLLLINKIDQTNQ 130

Query: 331 -----LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                L + + E         IS+ +   ++ +  +++ ++ +          + K   +
Sbjct: 131 PELEKLVAQWKELLPKAEIIPISALSNFNIDYVKRRVEELMPDSPPYFEKDALTDKPARF 190

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 191 FVTEIIR 197


>gi|315499945|ref|YP_004088748.1| gtp-binding protein era [Asticcacaulis excentricus CB 48]
 gi|315417957|gb|ADU14597.1| GTP-binding protein Era [Asticcacaulis excentricus CB 48]
          Length = 323

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 70/182 (38%), Gaps = 39/182 (21%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  NAGKS+L NAL    V+IVT    TTR  +          + + DT GI +   
Sbjct: 17  AIIGAPNAGKSTLVNALVGSKVSIVTQKVQTTRFPVRGIAIHGKAQIVLVDTPGIFKPRR 76

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------------------- 317
            +++  +K  +   E+AD++++L +  +   + FP                         
Sbjct: 77  RLDRAMVKSAWGGAEDADIVVMLIDAPAHLAVHFPAPDTKPTGADKLAVEDAETIIAGLK 136

Query: 318 -KNIDFIFIGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
             N   I +  K D             L+     +   +IS+  G G+ +L+  +   + 
Sbjct: 137 ANNRRAILVLNKIDLLRRDNLLALADSLFKEGVFDQVFMISAEKGNGISDLMEALADKMP 196

Query: 364 NK 365
           + 
Sbjct: 197 SG 198


>gi|194334593|ref|YP_002016453.1| GTP-binding protein Era [Prosthecochloris aestuarii DSM 271]
 gi|194312411|gb|ACF46806.1| GTP-binding protein Era [Prosthecochloris aestuarii DSM 271]
          Length = 307

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 72/193 (37%), Gaps = 27/193 (13%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  NAGKS+L N L    ++IVT    TTR  +T     E   +   DT GI     
Sbjct: 13  AIIGPPNAGKSTLLNRLLDHKLSIVTPKSQTTRKKITGIYHNEDCQIIFLDTPGIMIDPM 72

Query: 283 IVEKE-GIKRTFLEVENADLILLLKEINSKKEI-------------SFPKNIDFIFIGTK 328
            +  E  +K T   +  AD+++ L     K+ +                +    + +  K
Sbjct: 73  HMLHEAMLKTTRETLREADVVVALIPAVRKETLFDREFTKQLFHDWLTREKKPVVAVLNK 132

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL S                 E    +S+  G  +++L+  ++  L       P  I S
Sbjct: 133 CDLLSKAEQKEALAMIRKELKPEKAMALSALQGTHVDDLVEALQPFLPMDEPLYPEDILS 192

Query: 376 HKRHLYHLSQTVR 388
                + +S+ +R
Sbjct: 193 TAPERFFVSEIIR 205


>gi|15964826|ref|NP_385179.1| GTP-binding protein Era [Sinorhizobium meliloti 1021]
 gi|21263594|sp|Q92R46|ERA_RHIME RecName: Full=GTPase Era
 gi|15074005|emb|CAC45652.1| Probable GTP-binding protein [Sinorhizobium meliloti 1021]
          Length = 313

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 83/203 (40%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G +NAGKS+L N L    V+IV+    TTR ++          +   DT G
Sbjct: 20  RSGF-VALIGATNAGKSTLVNRLVGAKVSIVSHKVQTTRAIIRGIAIHGSAQIVFMDTPG 78

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTK 328
           I +    +++  +   +   ++ADLI+LL +       +++  +   K  +   + +  K
Sbjct: 79  IFKPRRRLDRAMVTTAWGGAKDADLIMLLIDSERGIKGDAEAILEGLKEVHQPKVLVLNK 138

Query: 329 SDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D                    E   +IS+ TG G E++++ +   L       P    S
Sbjct: 139 VDQVRREDLLKLAAAANDVVAFERTFMISALTGSGCEDVMDYLAETLPEGPWYYPEDQIS 198

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+++
Sbjct: 199 DLPMRQLAAEITREKLFLRLHQE 221


>gi|332525372|ref|ZP_08401535.1| putative GTP-binding protein [Rubrivivax benzoatilyticus JA2]
 gi|332108644|gb|EGJ09868.1| putative GTP-binding protein [Rubrivivax benzoatilyticus JA2]
          Length = 329

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 12/151 (7%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G  I I+G  N GKS+L NAL  + ++I +    TTR  +T    +        D
Sbjct: 33  EGQRCGL-IAIVGRPNVGKSTLLNALVGQKISITSRKAQTTRHRITGIRTVGATQFVFVD 91

Query: 274 TAGIRETDDIVEKEGIKRTF-----LEVENADLILLLKEI------NSKKEISFPKNIDF 322
           T G + T        + +T        V + D +L + E       ++K     P +   
Sbjct: 92  TPGFQTTHLKRHSGAMNKTLNRTVTASVADVDAVLFMVEAGRFGLDDAKVLALLPPDKPV 151

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           I +  K D     T+    L S        E
Sbjct: 152 ILVANKLDAVRRRTDILPWLKSMQERHAFAE 182


>gi|150009039|ref|YP_001303782.1| GTP-binding protein Era [Parabacteroides distasonis ATCC 8503]
 gi|262383938|ref|ZP_06077074.1| GTP-binding protein Era [Bacteroides sp. 2_1_33B]
 gi|298375726|ref|ZP_06985682.1| GTP-binding protein Era [Bacteroides sp. 3_1_19]
 gi|301312103|ref|ZP_07218025.1| GTP-binding protein Era [Bacteroides sp. 20_3]
 gi|149937463|gb|ABR44160.1| GTP-binding protein Era [Parabacteroides distasonis ATCC 8503]
 gi|262294836|gb|EEY82768.1| GTP-binding protein Era [Bacteroides sp. 2_1_33B]
 gi|298266763|gb|EFI08420.1| GTP-binding protein Era [Bacteroides sp. 3_1_19]
 gi|300830205|gb|EFK60853.1| GTP-binding protein Era [Bacteroides sp. 20_3]
          Length = 296

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 79/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I+T    TTR  +   ++ +   +  SDT G+   +
Sbjct: 10  VNIVGNPNVGKSTLMNRLVGERISIITSKAQTTRHRIMGIVNTDDMQIVYSDTPGVLRPN 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPK-----NIDFIFIGTKSD---- 330
             +++  +  +   + +AD++L + ++     K   F           + +  K D    
Sbjct: 70  YKLQESMLNFSQSALGDADVLLYVTDVVETIDKNNEFLARVQSIECPVLLLINKIDQTNQ 129

Query: 331 -----LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                L + + E         IS+ +   ++ +  +++ ++ +          + K   +
Sbjct: 130 PELEKLVAQWKELLPKAEIIPISALSNFNIDYVKRRVEELMPDSPPYFEKDALTDKPARF 189

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 190 FVTEIIR 196


>gi|51598915|ref|YP_073103.1| GTP-binding protein Era [Borrelia garinii PBi]
 gi|81609837|sp|Q660L0|ERA_BORGA RecName: Full=GTPase Era
 gi|51573486|gb|AAU07511.1| GTP-binding protein [Borrelia garinii PBi]
          Length = 290

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+   ILG  + GKS+L N++    ++I++ IP TTR+ +      +   +   DT 
Sbjct: 1   MKSGF-AAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGT 327
           G   +        +K     +   +LIL + +I  K         EI     I F+ +  
Sbjct: 60  GFHLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKILEIIKNSKIKFLVLLN 119

Query: 328 KSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL +T  +E                 IS+      EEL NKI    S      P    
Sbjct: 120 KVDLKNTKIKEITQFLKEKEIEDNNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYY 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +   + +S+ +R   + +L E+
Sbjct: 180 TDQEINFRISEIIREKAIENLKEE 203


>gi|71280742|ref|YP_270776.1| GTP-binding protein Era [Colwellia psychrerythraea 34H]
 gi|71146482|gb|AAZ26955.1| GTP-binding protein Era [Colwellia psychrerythraea 34H]
          Length = 305

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L NAL  + ++I +  P TTR  +   L  E     + DT G+  E 
Sbjct: 13  IAIVGRPNVGKSTLLNALLGQKISITSKKPQTTRHRILGILTEENRQAVLVDTPGLHTEE 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     +   +LI+ L E        E+   K        I +  K+D   
Sbjct: 73  KRAINRLMNRAASSSIAEVELIMFLVEGTHWTKDDELVLSKVKQSGTPCILVVNKTDNIP 132

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H               I +  G G++ +     + L       P    + +  
Sbjct: 133 DKDELLPHLQKLGAMHDFRDIVPICATKGHGVDTIRQLCLTSLPEGVFWFPEDHITDRSS 192

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 193 RFMASEIIR 201


>gi|189218239|ref|YP_001938881.1| GTP-binding protein protease modulator [Methylacidiphilum
           infernorum V4]
 gi|189185097|gb|ACD82282.1| GTP-binding protein protease modulator [Methylacidiphilum
           infernorum V4]
          Length = 432

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 25/221 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSSLFNALAKK 242
               + +L  I  LK ++        +    R  +      ++G++NAGKS+LFN L   
Sbjct: 163 EVDRRRILEKIHRLKKELEEVKKTRFIQRSSRQKFPWPTACLVGYTNAGKSTLFNRLTNA 222

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +V D    T D      +   GY + +SDT G  +       E  K T  EV  ADL
Sbjct: 223 HV-LVEDKLFATLDPTIRLFEFSGGYKIFLSDTVGFIQKLPHHLIESFKATLEEVTEADL 281

Query: 302 ILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYST------YTEEYD--H 341
           ++ L +++     +               +   I +  K DL +T        EEY    
Sbjct: 282 LIHLVDVSHPWAETQINEVNKVLEQIGAIHKPTILVWNKIDLVNTSGLIKRRIEEYPGSV 341

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
            IS+ TG G E L+ KI+  L ++ + L   +P  +  +  
Sbjct: 342 PISAATGFGCENLLVKIEEWLKSQRRFLSLKLPLERTDIVA 382


>gi|301167244|emb|CBW26826.1| putative GTP-binding protein [Bacteriovorax marinus SJ]
          Length = 613

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 70/194 (36%), Gaps = 39/194 (20%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYL------VKIS 272
             + ++G  N GKSSLFN L +K   AI  D PG TRD       +E         + + 
Sbjct: 6   MVVSLIGRPNVGKSSLFNRLMQKQHKAITHDQPGVTRDRHYGITTIEDLQDVDAADIILV 65

Query: 273 DTAG-----IRETDDIVEKE--------GIKRTFLEVENADLILLLKEI--------NSK 311
           DT G     I E     E+E              + +  +DL+L + ++        N+ 
Sbjct: 66  DTGGFYPERIDERGRNSEEENANKFFNIMTDHARMAIGESDLVLFVVDVREGALPFDNTI 125

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-----------ISSFTGEGLEELINKIKS 360
            +        F+ +  K D      EE D              S+  G G+  L  KI+ 
Sbjct: 126 ADYIRTTKKPFLVVANKYDSDKQAGEEIDFYSLGIDSDELFTTSATHGRGVTFLREKIQR 185

Query: 361 ILSNKFKKLPFSIP 374
           + S        S+P
Sbjct: 186 LASEFSNGALKSMP 199



 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 26/202 (12%)

Query: 175 DLDF---SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI-----IRNGY------ 220
           ++DF     + D    +S      + FL+  I    S+   G +     I  G       
Sbjct: 152 EIDFYSLGIDSDELFTTSATHGRGVTFLREKIQRLASEFSNGALKSMPEISKGVTPREEV 211

Query: 221 --KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT-AG 276
             KI ++G  NAGKS+L N L     A+V+DI GTT D +    DL  G   KI +   G
Sbjct: 212 VSKIALIGAPNAGKSTLLNLLVGAQRALVSDIAGTTVDPIEGFFDLYFGKEAKILEEDQG 271

Query: 277 IRETDD--IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334
               D     + E  +R      NAD+   + +  + +E S  KN+         +L + 
Sbjct: 272 FSSNDGLLFKQYEEFRR-----NNADVYQQMVDSYAIEEDSD-KNVGMEHFEVDYELTTL 325

Query: 335 YTEEYDHLISSFTGEGLEELIN 356
            TEE D   S    +  +++ N
Sbjct: 326 VTEELDQQRSESFDKNYDQVFN 347



 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 32/140 (22%)

Query: 269 VKISDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFP 317
           + I DTAGIR     +  +E + + R+   +  +D+++++ +  +          +IS  
Sbjct: 380 IHIIDTAGIRRQKTVNGFIESQSVYRSLRSITESDVVIVMIDATNGIGHQDRRLIDISLE 439

Query: 318 KNIDFIFIGTKSDLYSTYTEE---------------------YDHLISSFTGEGLEELIN 356
           K    I    K DL      +                         IS+   +G+++L  
Sbjct: 440 KGKSVIVALNKMDLMREQLPDEAAKREWLNNLRRDIPWLDFCDIITISAKHNKGMKKLKE 499

Query: 357 KIKSILSNKFKKLPFSIPSH 376
            +K  +  + + +P    + 
Sbjct: 500 ALKKTILVRSRNIPTGELNR 519


>gi|256060790|ref|ZP_05450952.1| GTP-binding protein Era [Brucella neotomae 5K33]
 gi|261324781|ref|ZP_05963978.1| GTP-binding protein era [Brucella neotomae 5K33]
 gi|261300761|gb|EEY04258.1| GTP-binding protein era [Brucella neotomae 5K33]
          Length = 311

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++          + + DT G
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIVLVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTK 328
           I      +++  +   +   ++AD+IL++ +       N++  +   K+     + +  K
Sbjct: 77  IFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAEALLESMKDVRQKKVLVLNK 136

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D                    +   +IS+  G G ++L   +   + N     P    S
Sbjct: 137 VDRVDPPVLLSLAQKANELVPFDRTFMISALNGSGCKDLAKYLAESVPNGLWYYPEDQIS 196

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+E+
Sbjct: 197 DMPMRQLAAEITREKLYLRLHEE 219


>gi|72390988|ref|XP_845788.1| GTP-binding protein [Trypanosoma brucei TREU927]
 gi|62359296|gb|AAX79737.1| GTP-binding protein, putative [Trypanosoma brucei]
 gi|70802324|gb|AAZ12229.1| GTP-binding protein, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 576

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 74/193 (38%), Gaps = 34/193 (17%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---------------NGYKIVILGHSNA 230
           +   +  +     + NDI+  +   K  E  R                  +I I+G  N+
Sbjct: 59  HADWRTQMKRSGSILNDITPALPDTKRTEEQRRRVAGWRPVVKLLGDQRLRIAIVGRMNS 118

Query: 231 GKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           GKSSLFN L  +        +V D  G TRD +     LEG    I DT G+      V+
Sbjct: 119 GKSSLFNLLRLEPTVPGRSNVVRDFDGITRDSVEGQAQLEGMHFTIIDTPGM------VQ 172

Query: 286 KEGIKRTFLEVENADLILLLKEINS---KKEISF-----PKNIDFIFIGTKSDLYSTYTE 337
              ++  F  VE AD  + +  ++     +E+S       K++  + +  K DL     E
Sbjct: 173 GRMVEEAFRTVETADAAIFVTAVDEDIMPEELSLMQYLHLKHMPVVLLANKMDLIQEEEE 232

Query: 338 EYDHLISSFTGEG 350
           E      +  G G
Sbjct: 233 EAVLDRYNSLGFG 245



 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 87/228 (38%), Gaps = 30/228 (13%)

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSM--EGMSGELSSLYGQWIDKLTHIRSFIEAD 175
               K+DL++ E    ++     +    ++           +    ++ L HI +  + +
Sbjct: 219 LLANKMDLIQEEEEEAVLDRYNSLGFGNAIPFSARRKSGLEMLAAVLEPLYHIHAMHKVE 278

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
            D+    D+++ + +   + +  ++                    +I I+G +N+GKSSL
Sbjct: 279 NDW----DIEDLAMQGDESAMEEIRE-----------RNCSDRFIRIAIVGRTNSGKSSL 323

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR---- 291
            N L   +     D   +TRD + +    +G  +K+ DTAG+       +++ I R    
Sbjct: 324 VNRLVGFERNRAVDEKNSTRDPVELPCSYKGRKLKLIDTAGLARHRYRADRDFIGRIHGL 383

Query: 292 TFLEVENADLILLLKEINSKKEISF---------PKNIDFIFIGTKSD 330
           +  E+  A +++++ +        +          +   F+    K D
Sbjct: 384 SVNEIRFAHVVIVVFDATEGHPNKYDMAVLHSVAAEGRPFLLCANKWD 431


>gi|326510903|dbj|BAJ91799.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 65/338 (19%), Positives = 127/338 (37%), Gaps = 38/338 (11%)

Query: 70  PSPESFTGE-DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEA 128
           P+P ++ G    AE       + V  +  E     +   A       ++F  G       
Sbjct: 181 PNPRTYIGSGKVAEI-----RSAVQALDAETIIFDDELSAGQLRNLDKSFGGGVRVCDRT 235

Query: 129 ESLADLIS---SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
             + D+ +   +  E   ++++  M  +L  L   W          ++        E   
Sbjct: 236 ALILDIFNQRAATHEAALQVTLAQMEYQLPRLTKLWTHLERQSGGQVK-----GMGEKQI 290

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKK 242
               + +   I  L+ ++ S     KL    R    I    ++G++NAGKS+L N L   
Sbjct: 291 EVDKRILRTQISTLRKELESVRKHRKLYRNRRQSVPIPVVSLVGYTNAGKSTLLNRLTGA 350

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV +  D    T D  T  + ++ G    ++DT G  +    +     + T  E+  + +
Sbjct: 351 DV-LAEDKLFATLDPTTRRVLMKSGTEFLLTDTVGFIQKLPTMLVAAFRATLEEISESSI 409

Query: 302 ILLLKEIN---SKKEISFPKN---------IDFIFIGTKSD-------LYSTYTEEYDHL 342
           I+ L +I+   ++++I              +  + +  K D       +     ++    
Sbjct: 410 IVHLVDISHQLAQQQIGAVDKVLKELDIDSVPKLVVWNKIDNTDNPLRVKEEAAKQGIIC 469

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           IS+  G+GLEEL N I++ L +    +   +P +K  L
Sbjct: 470 ISAMNGDGLEELCNAIQAKLKDSLVLIGAFVPYNKGDL 507


>gi|148560637|ref|YP_001258647.1| GTP-binding protein Era [Brucella ovis ATCC 25840]
 gi|225627161|ref|ZP_03785199.1| GTP-binding protein Era [Brucella ceti str. Cudo]
 gi|225852184|ref|YP_002732417.1| GTP-binding protein Era [Brucella melitensis ATCC 23457]
 gi|254701450|ref|ZP_05163278.1| GTP-binding protein Era [Brucella suis bv. 5 str. 513]
 gi|254707630|ref|ZP_05169458.1| GTP-binding protein Era [Brucella pinnipedialis M163/99/10]
 gi|254709788|ref|ZP_05171599.1| GTP-binding protein Era [Brucella pinnipedialis B2/94]
 gi|254713790|ref|ZP_05175601.1| GTP-binding protein Era [Brucella ceti M644/93/1]
 gi|254717153|ref|ZP_05178964.1| GTP-binding protein Era [Brucella ceti M13/05/1]
 gi|256031278|ref|ZP_05444892.1| GTP-binding protein Era [Brucella pinnipedialis M292/94/1]
 gi|256113202|ref|ZP_05454070.1| GTP-binding protein Era [Brucella melitensis bv. 3 str. Ether]
 gi|256159388|ref|ZP_05457170.1| GTP-binding protein Era [Brucella ceti M490/95/1]
 gi|256254686|ref|ZP_05460222.1| GTP-binding protein Era [Brucella ceti B1/94]
 gi|256264306|ref|ZP_05466838.1| GTP-binding protein Era [Brucella melitensis bv. 2 str. 63/9]
 gi|260168416|ref|ZP_05755227.1| GTP-binding protein Era [Brucella sp. F5/99]
 gi|261218968|ref|ZP_05933249.1| GTP-binding protein era [Brucella ceti M13/05/1]
 gi|261221864|ref|ZP_05936145.1| GTP-binding protein era [Brucella ceti B1/94]
 gi|261315122|ref|ZP_05954319.1| GTP-binding protein era [Brucella pinnipedialis M163/99/10]
 gi|261317323|ref|ZP_05956520.1| GTP-binding protein era [Brucella pinnipedialis B2/94]
 gi|261321533|ref|ZP_05960730.1| GTP-binding protein era [Brucella ceti M644/93/1]
 gi|261751990|ref|ZP_05995699.1| GTP-binding protein era [Brucella suis bv. 5 str. 513]
 gi|261757877|ref|ZP_06001586.1| GTP-binding protein Era [Brucella sp. F5/99]
 gi|265988361|ref|ZP_06100918.1| GTP-binding protein era [Brucella pinnipedialis M292/94/1]
 gi|265994610|ref|ZP_06107167.1| GTP-binding protein era [Brucella melitensis bv. 3 str. Ether]
 gi|265997828|ref|ZP_06110385.1| GTP-binding protein era [Brucella ceti M490/95/1]
 gi|294852026|ref|ZP_06792699.1| GTP-binding protein Era [Brucella sp. NVSL 07-0026]
 gi|148371894|gb|ABQ61873.1| GTP-binding protein Era [Brucella ovis ATCC 25840]
 gi|225617996|gb|EEH15040.1| GTP-binding protein Era [Brucella ceti str. Cudo]
 gi|225640549|gb|ACO00463.1| GTP-binding protein Era [Brucella melitensis ATCC 23457]
 gi|260920448|gb|EEX87101.1| GTP-binding protein era [Brucella ceti B1/94]
 gi|260924057|gb|EEX90625.1| GTP-binding protein era [Brucella ceti M13/05/1]
 gi|261294223|gb|EEX97719.1| GTP-binding protein era [Brucella ceti M644/93/1]
 gi|261296546|gb|EEY00043.1| GTP-binding protein era [Brucella pinnipedialis B2/94]
 gi|261304148|gb|EEY07645.1| GTP-binding protein era [Brucella pinnipedialis M163/99/10]
 gi|261737861|gb|EEY25857.1| GTP-binding protein Era [Brucella sp. F5/99]
 gi|261741743|gb|EEY29669.1| GTP-binding protein era [Brucella suis bv. 5 str. 513]
 gi|262552296|gb|EEZ08286.1| GTP-binding protein era [Brucella ceti M490/95/1]
 gi|262765723|gb|EEZ11512.1| GTP-binding protein era [Brucella melitensis bv. 3 str. Ether]
 gi|263094579|gb|EEZ18377.1| GTP-binding protein Era [Brucella melitensis bv. 2 str. 63/9]
 gi|264660558|gb|EEZ30819.1| GTP-binding protein era [Brucella pinnipedialis M292/94/1]
 gi|294820615|gb|EFG37614.1| GTP-binding protein Era [Brucella sp. NVSL 07-0026]
 gi|326408684|gb|ADZ65749.1| GTP-binding protein Era [Brucella melitensis M28]
 gi|326538409|gb|ADZ86624.1| GTP-binding protein Era [Brucella melitensis M5-90]
          Length = 311

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++          + + DT G
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIVLVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTK 328
           I      +++  +   +   ++AD+IL++ +       N++  +   K+     + +  K
Sbjct: 77  IFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAEALLESMKDVRQKKVLVLNK 136

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D                    +   +IS+  G G ++L   +   + N     P    S
Sbjct: 137 VDRVDPPVLLSLAQKANELVPFDRTFMISALNGSGCKDLAKYLAESVPNGPWYYPEDQIS 196

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+E+
Sbjct: 197 DMPMRQLAAEITREKLYLRLHEE 219


>gi|254718803|ref|ZP_05180614.1| GTP-binding protein Era [Brucella sp. 83/13]
 gi|265983785|ref|ZP_06096520.1| GTP-binding protein era [Brucella sp. 83/13]
 gi|306837523|ref|ZP_07470398.1| GTP-binding protein Era [Brucella sp. NF 2653]
 gi|306845264|ref|ZP_07477840.1| GTP-binding protein Era [Brucella sp. BO1]
 gi|264662377|gb|EEZ32638.1| GTP-binding protein era [Brucella sp. 83/13]
 gi|306274423|gb|EFM56230.1| GTP-binding protein Era [Brucella sp. BO1]
 gi|306407415|gb|EFM63619.1| GTP-binding protein Era [Brucella sp. NF 2653]
          Length = 311

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++          + + DT G
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIVLVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTK 328
           I      +++  +   +   ++AD+IL++ +       N++  +   K+     + +  K
Sbjct: 77  IFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAEALLESMKDVRQKKVLVLNK 136

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D                    +   +IS+  G G ++L   +   + N     P    S
Sbjct: 137 VDRVDPPVLLSLAQKANELVPFDRTFMISALNGSGCKDLAKYLAESVPNGPWYYPEDQIS 196

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+E+
Sbjct: 197 DMPMRQLAAEITREKLYLRLHEE 219


>gi|237752720|ref|ZP_04583200.1| GTP-binding protein Era [Helicobacter winghamensis ATCC BAA-430]
 gi|229376209|gb|EEO26300.1| GTP-binding protein Era [Helicobacter winghamensis ATCC BAA-430]
          Length = 296

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 71/167 (42%), Gaps = 15/167 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG  NAGKS+  N L  + + +V+     TR  + + L      +   DT GI + +
Sbjct: 10  VAVLGRPNAGKSTFLNTLLGEKLTLVSHKANATRKRMHLVLMEGETQIVFVDTPGIHKQE 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISFPKNIDFIFIGTKSDLYSTYT 336
            ++ +  +K     +++ D++L L   +      K+ +   K+   + + TK D  S   
Sbjct: 70  KLLNQYMLKEALQALQDCDVLLFLAPASDKISYYKEFLEMAKDKKHLLLLTKIDSVSKEV 129

Query: 337 --------EEYDHLISSFTGEGLEEL--INKIKSILSNKFKKLPFSI 373
                   E++     +     +++L  + ++  +L+    + P+  
Sbjct: 130 LFETMRQYEKFKDCYEALIPISIKDLGSLKRVVEVLAKLMPQSPYYY 176


>gi|197334668|ref|YP_002156885.1| GTP-binding protein Era [Vibrio fischeri MJ11]
 gi|197316158|gb|ACH65605.1| GTP-binding protein Era [Vibrio fischeri MJ11]
          Length = 322

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 25/212 (11%)

Query: 202 DISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           D+ ++ +     E + +      I I+G  N GKS+L N +  + ++I +  P TTR  +
Sbjct: 8   DLDAYFASEGKSEAVSDNQHCGFIAIVGRPNVGKSTLLNQILGQKISITSRKPQTTRHRI 67

Query: 259 TIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEI 314
                   Y     DT G+  E    + +   +     + + +L+L L +        E+
Sbjct: 68  MGVDTDGDYQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVLFLVDGTHWTPDDEM 127

Query: 315 SFPK----NIDFIFIGTKSDLYSTYTEEYDH--------------LISSFTGEGLEELIN 356
              K        + +  K D      +   H               IS+ TG  ++ +  
Sbjct: 128 VLNKLKKSEFPTVLLVNKVDNVKDKKDVMTHLQEMTEKMDFVDVVPISAKTGSNVDVVHK 187

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            ++  L       P    + +   +  S+ +R
Sbjct: 188 LVREHLPKAVHHFPEEYVTDRSQRFMASEIIR 219


>gi|224367274|ref|YP_002601437.1| GTPase [Desulfobacterium autotrophicum HRM2]
 gi|223689990|gb|ACN13273.1| GTPase [Desulfobacterium autotrophicum HRM2]
          Length = 405

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 18/200 (9%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           +    +IV+ G  NAGKSSL N L +KD+AI ++ PGTT D +T  ++L    +  I+DT
Sbjct: 6   LAEMTRIVLAGVRNAGKSSLMNNLFQKDIAITSETPGTTTDPVTRKIELGKLGMCAITDT 65

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS---FPKNIDFIFIG 326
           AG+ +   + E+  I +T   +E ADLIL +   +     ++KE+      KN+ +I + 
Sbjct: 66  AGLDDAGALGEQR-ILKTRERLETADLILFVSPGDKAPTPAEKELKNWLLEKNLPWIGVI 124

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           +  DL       ++   + F  +    L N I+       +K+        R +  +   
Sbjct: 125 SFKDLPR-----HEEKKTFFEQQEQIVLDNTIEKSCLPLIEKMEKLEKEIHREMTPVEGL 179

Query: 387 VRYLEMASLNEKDCGLDIIA 406
           V+  ++  L      +D+ A
Sbjct: 180 VQEQDLVLLV---TPIDLAA 196


>gi|251778361|ref|ZP_04821281.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082676|gb|EES48566.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 397

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  NAGKSSL NAL  + +++V+D PGTT D ++  ++L     V I DTAG
Sbjct: 8   NRLHISIFGKRNAGKSSLINALTNQPLSLVSDTPGTTTDPVSKAMELLPLGPVVIIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISF-----PKNIDFIFIGTK 328
           + +T D+     +++T   +   DL +L+    + N + E  +      KNI  I +  K
Sbjct: 68  LDDTGDLGTLR-VEKTKEVMLKTDLAVLVFSAEDNNIENEKEWFKDLKQKNIPVIGVLNK 126

Query: 329 SDL----YSTYTEEYDHLI---SSFTGEGLEELINKI 358
            DL         +E+D      SS     + +    +
Sbjct: 127 IDLGMSNLELLQKEFDIPFVEISSREKINIGKFKELL 163


>gi|220912237|ref|YP_002487546.1| GTP-binding proten HflX [Arthrobacter chlorophenolicus A6]
 gi|219859115|gb|ACL39457.1| GTP-binding proten HflX [Arthrobacter chlorophenolicus A6]
          Length = 553

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 84/217 (38%), Gaps = 22/217 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+ +I++     + K     RN    + I G++NAGKSSL N L   
Sbjct: 295 ELDRRRIRTRMAKLRREIAAMKPARETKRANRRRNEVPSVAIAGYTNAGKSSLLNRLTDA 354

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G    ++DT G   +      E  + T  EV ++DLI
Sbjct: 355 GVLVENALFATLDPTIRKAETSDGLGYTLADTVGFVRSLPTQLVEAFRSTLEEVADSDLI 414

Query: 303 LLLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTY-------TEEYDHLI 343
           L + + +                    + I  I +  K+D    +        E    ++
Sbjct: 415 LHVVDASHPDPEGQIAAVRKVFGEVDARKIPEIIVLNKADAADPFVVERLKQREPRHVVV 474

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           S+ TGEG+ EL+  I   +     +L   IP ++  L
Sbjct: 475 SARTGEGIAELLKTISDSIPRPGVQLELLIPYNRGDL 511


>gi|148256031|ref|YP_001240616.1| GTP-binding protein Era [Bradyrhizobium sp. BTAi1]
 gi|189037293|sp|A5EKL6|ERA_BRASB RecName: Full=GTPase Era
 gi|146408204|gb|ABQ36710.1| GTP-binding protein (era) [Bradyrhizobium sp. BTAi1]
          Length = 308

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 22/197 (11%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G   R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +      + + 
Sbjct: 10  GAETRCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEGTSQIILV 68

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPK----NIDFIF 324
           DT GI      +++  +   +    +ADL+ +L +     + + +    K        I 
Sbjct: 69  DTPGIFSPKRRLDRAMVTTAWSGAHDADLVCVLLDAKKGLDDEAQAIIDKAAAVAHQKIL 128

Query: 325 IGTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +  K DL                       +IS+ +G+G+++L   + +++       P 
Sbjct: 129 VVNKVDLVPREKLLALVAAANEKLPFARTFMISALSGDGVDDLKQALAAMVPPGPFHYPE 188

Query: 372 SIPSHKRHLYHLSQTVR 388
              S     +  ++  R
Sbjct: 189 DQMSDAPMRHLAAEITR 205


>gi|169351079|ref|ZP_02868017.1| hypothetical protein CLOSPI_01858 [Clostridium spiroforme DSM 1552]
 gi|169292141|gb|EDS74274.1| hypothetical protein CLOSPI_01858 [Clostridium spiroforme DSM 1552]
          Length = 296

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 36/221 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N + +  +AI++D+  TTR+ +      +   +   DT GI +  
Sbjct: 7   VSIVGRPNVGKSTLLNCILETKLAIMSDVAQTTRNTIQGIYTDDQAQIIFMDTPGIHKPQ 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333
           D +           +   DL+L L   N K         E     +     I +K D  S
Sbjct: 67  DRLGTFMNSTALNSIFGVDLVLFLAPANEKIGRGDKYIIERLKEADGPVFLILSKIDTVS 126

Query: 334 T---------YTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                     + E +D      IS+     ++ L+  IK+ L       P    +     
Sbjct: 127 KEELVVKLQQWQELFDFKEIIPISAKENNNVDLLLKTIKNYLPEGNMYYPKDHLTDHPER 186

Query: 381 YHLSQTVR---------------YLEMASLNEKDCGLDIIA 406
           + +++ +R                + +  + E + G++IIA
Sbjct: 187 FVMAEFIREKILYFTREEVPHSVAIVIERMLEDENGVEIIA 227


>gi|167563526|ref|ZP_02356442.1| GTP-binding protein Era [Burkholderia oklahomensis EO147]
 gi|167570686|ref|ZP_02363560.1| GTP-binding protein Era [Burkholderia oklahomensis C6786]
          Length = 299

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 63/188 (33%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    ++       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTVDDAQYIFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P     + +  K D  S 
Sbjct: 74  STALNRSLNRAVTSTLTSIDAILFVIEAGRFGPDDQKVLDLIPPGTPTLLVANKLDRVSD 133

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               Y                  S+   E +  L + IK  L            + +   
Sbjct: 134 KDTLYPFFQKMGALREFAEIVPLSAKHSEDILRLTDTIKPYLPEGEPIYGEDDLTDRSSR 193

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 194 FLAAEILR 201


>gi|227495177|ref|ZP_03925493.1| possible GTP-binding protein HflX [Actinomyces coleocanis DSM
           15436]
 gi|226831629|gb|EEH64012.1| possible GTP-binding protein HflX [Actinomyces coleocanis DSM
           15436]
          Length = 543

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 79/220 (35%), Gaps = 23/220 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+N+I++        +          + I G++NAGKS+L N L   
Sbjct: 279 ELDRRRIRKRMSKLRNEIAAMKPARDTQRQSRRSGEIPSVAIAGYTNAGKSTLLNRLTGA 338

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V +   +  T    +      +G L  ++DT G          E  + T  EV +ADLI
Sbjct: 339 EVMVQNALFATLDPTVRQTKTDDGRLYTLTDTVGFVRNLPTQLVEAFRSTLEEVGDADLI 398

Query: 303 LLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           + + +                 + I     I  I    K+DL +                
Sbjct: 399 VHVVDAAHPDPMGQIKAVHAVFETIDGAMEIPEIIALNKADLATEADLAVLRSLLPNSVA 458

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           +S+ TG G+ +L   I  +L     K+   +P     L H
Sbjct: 459 VSAHTGAGMGDLQELIAQMLPRPSVKVDVVVPYAHGDLVH 498


>gi|116072347|ref|ZP_01469614.1| GTP-binding protein Era [Synechococcus sp. BL107]
 gi|116064869|gb|EAU70628.1| GTP-binding protein Era [Synechococcus sp. BL107]
          Length = 319

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 79/196 (40%), Gaps = 24/196 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ I ++G  N GKS+L N L  + VAI + +  TTR+ L   L  E   + + DT 
Sbjct: 17  YRSGF-IALIGRPNVGKSTLLNKLVGEKVAITSPVAQTTRNRLRAILTTEESQMVLVDTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGT 327
           GI +   ++ +  +      +   DL+LLL E   +          +   +++  +    
Sbjct: 76  GIHKPHHLLGERLVHSARSAIGEVDLVLLLLEGCERPGRGDAFIVNLLKQQSLPVLVALN 135

Query: 328 KSDLYS---------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           K DL +                 T    H  S+ +G+G  EL   +   L    +  P  
Sbjct: 136 KWDLVAADQQDQAAASYDELLAETHWPVHRCSAISGDGCRELSAVMAEQLPLGPQLYPPD 195

Query: 373 IPSHKRHLYHLSQTVR 388
           + + +     L + +R
Sbjct: 196 MVTDQPERVLLGELIR 211


>gi|332678448|gb|AEE87577.1| GTP-binding protein Era [Francisella cf. novicida Fx1]
          Length = 297

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 63/164 (38%), Gaps = 21/164 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N + K  V+I +  P TTR  +T    L G      DT GI  + 
Sbjct: 7   ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGGTQFIYVDTPGIHIKE 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSD--- 330
              + K   K      ++ D+IL + E+    E+            I    +  K D   
Sbjct: 67  PKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKHSEIRIFLVVNKVDKKK 126

Query: 331 ------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSN 364
                    +  E+         S+  G  + EL ++I+ +L  
Sbjct: 127 SLEAAMFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLLPE 170


>gi|295111440|emb|CBL28190.1| iron-only hydrogenase maturation protein HydF [Synergistetes
           bacterium SGP1]
          Length = 407

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 14/158 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               +   G  NAGKSSL NA+  +D++IV+D+ GTT D +   ++L     V I DT G
Sbjct: 10  ERVHVAFFGVRNAGKSSLVNAVTGQDLSIVSDVGGTTTDPVRKAMELLPLGPVLIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
           + +   +     ++RT   +   D  +L  +              +   + I F+   TK
Sbjct: 70  LDDEGALGALR-VERTLRILAETDAAVLAADARRPLTEHDHRLLALLKERAIPFLIARTK 128

Query: 329 SDLY----STYTEEYDHLISSFTGEGLEELINKIKSIL 362
           +DL            +  +S+ TGE +EEL  +I ++ 
Sbjct: 129 ADLLRPEERPAPGRDELCVSAVTGENVEELKERIAALA 166


>gi|156086578|ref|XP_001610698.1| GTPase [Babesia bovis T2Bo]
 gi|154797951|gb|EDO07130.1| GTPase, putative [Babesia bovis]
          Length = 622

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 21/191 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAI-------VTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + +LG SN GKSSLFNALA  +V++       V+  PGTTRD     + ++G  + + DT
Sbjct: 3   VTLLGRSNVGKSSLFNALAGSNVSVPKFMKSVVSSNPGTTRDAKYGQIFIKGKRITLVDT 62

Query: 275 ---------AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI 325
                     G+  +        ++        +DL+L + +   ++ I+     D    
Sbjct: 63  GGIESAVMPPGLGSSSCSNRFSILEHALKTAGRSDLVLFVVD--GQEGITPL---DMTIA 117

Query: 326 GTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
               D  S+ +     +++    EG EE    +   +S+ +            H  H +Q
Sbjct: 118 SNLKDQCSSTSSVLKLVVNKLDSEGSEEYYEAVSKCISDCYSLGLGDPIFVSTHDRHGAQ 177

Query: 386 TVRYLEMASLN 396
            +R +   SLN
Sbjct: 178 RLRSIISKSLN 188


>gi|121602372|ref|YP_988930.1| GTP-binding proten HflX [Bartonella bacilliformis KC583]
 gi|120614549|gb|ABM45150.1| GTP-binding proten HflX [Bartonella bacilliformis KC583]
          Length = 457

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 31/218 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKK 242
               + + + I+ ++ ++ + I    L    R       I ++G++NAGKS+LFN L+  
Sbjct: 183 EADRRILQDKIVRVRRELKTVIKTRALHRANRKKTCHPVIALVGYTNAGKSTLFNRLSGA 242

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++ +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 243 NI-LTKDMLFATLDPTLRKITLPYGKTVLLSDTVGFISNLPTHLIAAFRATLEEVIEADL 301

Query: 302 ILLLKEINSKK---------------EISFPKNIDFIFIGTKSDLYSTY----------- 335
           I+ +++I+                   I        I +  K D+   +           
Sbjct: 302 IIHVRDISDPDHQFHAQDVLEILSSLGIDINDKGRIIEVWNKIDILDQHVLNALQMNTKT 361

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                 ++S+ TGEGL++L+  I+ ++S + + + F +
Sbjct: 362 LLNPALMVSALTGEGLKQLLITIEKLISGEMQNIEFVL 399


>gi|89256163|ref|YP_513525.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314634|ref|YP_763357.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502202|ref|YP_001428267.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010561|ref|ZP_02275492.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367486|ref|ZP_04983512.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257]
 gi|290954579|ref|ZP_06559200.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295311969|ref|ZP_06802792.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143994|emb|CAJ79229.1| GTP-binding protein [Francisella tularensis subsp. holarctica LVS]
 gi|115129533|gb|ABI82720.1| GTP-binding protein [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253302|gb|EBA52396.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257]
 gi|156252805|gb|ABU61311.1| GTP-binding protein [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 297

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 21/164 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N + K  V+I +  P TTR  +T    L        DT GI  + 
Sbjct: 7   ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSD--- 330
              + K   K      ++ D+IL + E+    E+            I    +  K D   
Sbjct: 67  PKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKHSEIPIFLVVNKVDKKK 126

Query: 331 -LYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSN 364
            L +    EY            +S+  G  + EL ++I+ +L  
Sbjct: 127 SLEAAMFIEYIKEKLSFYDVIYVSAKQGHNINELESRIEKLLPE 170


>gi|313827765|gb|EFS65479.1| GTP-binding protein HflX [Propionibacterium acnes HL063PA2]
          Length = 493

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 31/220 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQ---GKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK- 242
           + +  ++  + +     +HI      K  + IRN    + I+G++NAGKSSL N L +  
Sbjct: 237 TDRRRISHRIAVLRRRLTHIESTRASKRADRIRNQVPSVAIVGYTNAGKSSLLNRLTRAG 296

Query: 243 ---DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + A+   +  TTR   T     +G +  ++DT G          E    T  E   A
Sbjct: 297 VLVENALFATLDPTTRRATT----SDGRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMA 352

Query: 300 DLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE-------EYD 340
           D++L + + +    +                NI  I +  K D  S  T           
Sbjct: 353 DVLLHVVDADDPDPLGQVDAVRGVLSGIGASNIPEILVLNKIDRLSDETILTLRSTFPGA 412

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +L+S+ TGEG+++L+  I++ L    +++   IP  +  L
Sbjct: 413 YLVSAHTGEGIDKLVEAIEAGLPIPSQRVDVVIPYARGDL 452


>gi|62289623|ref|YP_221416.1| GTP-binding protein Era [Brucella abortus bv. 1 str. 9-941]
 gi|82699551|ref|YP_414125.1| GTP-binding protein Era [Brucella melitensis biovar Abortus 2308]
 gi|189023876|ref|YP_001934644.1| GTP-binding protein Era [Brucella abortus S19]
 gi|237815118|ref|ZP_04594116.1| GTP-binding protein Era [Brucella abortus str. 2308 A]
 gi|254688938|ref|ZP_05152192.1| GTP-binding protein Era [Brucella abortus bv. 6 str. 870]
 gi|254693420|ref|ZP_05155248.1| GTP-binding protein Era [Brucella abortus bv. 3 str. Tulya]
 gi|254697073|ref|ZP_05158901.1| GTP-binding protein Era [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729969|ref|ZP_05188547.1| GTP-binding protein Era [Brucella abortus bv. 4 str. 292]
 gi|256257186|ref|ZP_05462722.1| GTP-binding protein Era [Brucella abortus bv. 9 str. C68]
 gi|260545622|ref|ZP_05821363.1| GTP-binding protein Era [Brucella abortus NCTC 8038]
 gi|260754425|ref|ZP_05866773.1| GTP-binding protein era [Brucella abortus bv. 6 str. 870]
 gi|260757644|ref|ZP_05869992.1| GTP-binding protein era [Brucella abortus bv. 4 str. 292]
 gi|260761471|ref|ZP_05873814.1| GTP-binding protein era [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883453|ref|ZP_05895067.1| GTP-binding protein era [Brucella abortus bv. 9 str. C68]
 gi|261213671|ref|ZP_05927952.1| GTP-binding protein era [Brucella abortus bv. 3 str. Tulya]
 gi|297248034|ref|ZP_06931752.1| GTP-binding protein Era [Brucella abortus bv. 5 str. B3196]
 gi|62195755|gb|AAX74055.1| Era, GTP-binding protein Era [Brucella abortus bv. 1 str. 9-941]
 gi|82615652|emb|CAJ10639.1| Serpin:Elongation factor, GTP-binding:ATP/GTP-binding site motif A
           (P-loop):Type 2 KH domain:Small GTP-binding protein
           domain [Brucella melitensis biovar Abortus 2308]
 gi|189019448|gb|ACD72170.1| GTP-binding protein Era [Brucella abortus S19]
 gi|237789955|gb|EEP64165.1| GTP-binding protein Era [Brucella abortus str. 2308 A]
 gi|260097029|gb|EEW80904.1| GTP-binding protein Era [Brucella abortus NCTC 8038]
 gi|260667962|gb|EEX54902.1| GTP-binding protein era [Brucella abortus bv. 4 str. 292]
 gi|260671903|gb|EEX58724.1| GTP-binding protein era [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674533|gb|EEX61354.1| GTP-binding protein era [Brucella abortus bv. 6 str. 870]
 gi|260872981|gb|EEX80050.1| GTP-binding protein era [Brucella abortus bv. 9 str. C68]
 gi|260915278|gb|EEX82139.1| GTP-binding protein era [Brucella abortus bv. 3 str. Tulya]
 gi|297175203|gb|EFH34550.1| GTP-binding protein Era [Brucella abortus bv. 5 str. B3196]
          Length = 311

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++          + + DT G
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIVLVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTK 328
           I      +++  +   +   ++AD+IL++ +       N++  +   K+     + +  K
Sbjct: 77  IFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAEALLESMKDIRQKKVLVLNK 136

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D                    +   +IS+  G G ++L   +   + N     P    S
Sbjct: 137 VDRVDPPVLLSLAQKANELVPFDRTFMISALNGSGCKDLAKYLAESVPNGPWYYPEDQIS 196

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+E+
Sbjct: 197 DMPMRQLAAEITREKLYLRLHEE 219


>gi|238026618|ref|YP_002910849.1| GTP-binding protein Era [Burkholderia glumae BGR1]
 gi|237875812|gb|ACR28145.1| GTP-binding protein Era [Burkholderia glumae BGR1]
          Length = 299

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    L        DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLPDAQYIFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSD 330
                  + RT    + + D IL + E       + K     P  +  + I  K D
Sbjct: 74  STALNRSLNRTVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPKVPTLLILNKLD 129


>gi|195953604|ref|YP_002121894.1| GTP-binding proten HflX [Hydrogenobaculum sp. Y04AAS1]
 gi|195933216|gb|ACG57916.1| GTP-binding proten HflX [Hydrogenobaculum sp. Y04AAS1]
          Length = 370

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 109/258 (42%), Gaps = 27/258 (10%)

Query: 134 LISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
           +  ++T+    ++ +  ++ EL  LYG    KL+     +       +  +++  + ++ 
Sbjct: 108 MARAKTQQAKLQIELAKLTYELPRLYG-VGTKLSRQSGKMGTRGPGEQLIEIKRRAIQKR 166

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  I      I  H  + +   +  N  K+ ++G++NAGKSSL  AL KK+V I +D+  
Sbjct: 167 IYKIKEEIEQIKKHHKEQRKNRLKTNYLKVALVGYTNAGKSSLMKALTKKNVFI-SDMLF 225

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
            T D       ++G  + I+DT G  +       E  K T  EV  ADL++ + +I+  +
Sbjct: 226 ATLDTKVGTSFIDGEKIFITDTVGFIDRLPPELVESFKTTLEEVTLADLLVFVVDISDHR 285

Query: 313 EISFP------------KNIDFIFIGTKSDL------------YSTYTEEYDHLISSFTG 348
            +               K+   +++  K D                + E+   L+SS   
Sbjct: 286 WLKKIDVVNKILEDIGVKDKPILYVFNKIDRLVSSKEYIVGFEKEFFFEKPYVLVSSEKD 345

Query: 349 EGLEELINKIKSILSNKF 366
             ++ L+ +IKS     F
Sbjct: 346 WNIDVLLERIKSYYKAHF 363


>gi|72161252|ref|YP_288909.1| GTP-binding protein Era [Thermobifida fusca YX]
 gi|71914984|gb|AAZ54886.1| Small GTP-binding protein domain [Thermobifida fusca YX]
          Length = 315

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 23/214 (10%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +S     E  R+G+ +  +G  N GKS+L NAL  + VAI +D P TTR  +   +  E 
Sbjct: 10  LSAPTQQEGFRSGF-VCFIGRPNVGKSTLMNALVGRKVAITSDRPQTTRRTIRGIVHREN 68

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFP 317
             + I DT G+ +   ++ +         +   D+I      +           +E++  
Sbjct: 69  AQLIIVDTPGLHKPRTLLGERLDSLVRSTLVEVDVIGFCIPADEPIGRGDTYIARELAQQ 128

Query: 318 KNIDFIFIGTKSD------------LYSTYTEEYDHLI-SSFTGEGLEELINKIKSILSN 364
           K    + I TK+D              S   +  D +  S+ +G  L+EL++ + S L  
Sbjct: 129 KETPVVAIVTKTDKARRAQIAQQLVAVSELGDWADIVPVSAASGFQLDELVDVLCSHLPE 188

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                P    + +     +++ VR   +A + E+
Sbjct: 189 GPPLYPDGDLTDEPEEILVAELVREAALAGVREE 222


>gi|226493766|ref|NP_001148067.1| GTP-binding protein hflX [Zea mays]
 gi|195615598|gb|ACG29629.1| GTP-binding protein hflX [Zea mays]
 gi|195656523|gb|ACG47729.1| GTP-binding protein hflX [Zea mays]
          Length = 552

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 101/267 (37%), Gaps = 27/267 (10%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++++  M  +L  L   W          ++        E       + +   
Sbjct: 246 AATHEASLQVTLAQMEYQLPRLTKMWSHLERQAGGQVK-----GMGEKQIEVDKRILRTQ 300

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           I  L+ ++ S     KL    R    I    ++G++NAGKS+L N L   DV     +  
Sbjct: 301 ISALRKELESVRKHRKLYRNRRQSVPIPVVSLVGYTNAGKSTLLNRLTGADVLAEDKLFA 360

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--- 309
           T        L   G    ++DT G  +    +     + T  E+  + +I+ L +I+   
Sbjct: 361 TLDPTTRRVLMKNGTEFLLTDTVGFIQKLPTMLVAAFRATLEEISESSVIVHLVDISHPL 420

Query: 310 SKKEISFPKN---------IDFIFIGTKSD-------LYSTYTEEYDHLISSFTGEGLEE 353
           ++++I   +          I  + +  K D       +     ++    IS+  G+GLE+
Sbjct: 421 AQQQIDAVERVLKELDVESIPKLVVWNKIDNTDEPLSVKEEAQKQGIICISAMNGDGLED 480

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHL 380
           L N +++ L +    +   +P  K  L
Sbjct: 481 LCNAVQAKLKDSMVPIEAFVPYDKGDL 507


>gi|209884976|ref|YP_002288833.1| GTP-binding protein Era [Oligotropha carboxidovorans OM5]
 gi|226741225|sp|B6JGG2|ERA_OLICO RecName: Full=GTPase Era
 gi|209873172|gb|ACI92968.1| GTP-binding protein Era [Oligotropha carboxidovorans OM5]
          Length = 308

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 76/195 (38%), Gaps = 24/195 (12%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +     R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +      + 
Sbjct: 8   EQAHPTRCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVVEGNAQIV 66

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPK----NIDF 322
           + DT GI      +++  +   +    +AD++ +L +     + + E  F K        
Sbjct: 67  LVDTPGIFTPKRRLDRAMVSTAWSGAHDADMVCVLLDARAGLDEEAEAIFTKLEAVKHPK 126

Query: 323 IFIGTKSDLYS-------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             +  K DL +                     ++++ +G+G+++L   + + +       
Sbjct: 127 FLVINKIDLVAREKLLALAQRANERIAFRETFMVAALSGDGVDDLRRALAAAMPEGPYLY 186

Query: 370 PFSIPSHK--RHLYH 382
           P    S    RHL  
Sbjct: 187 PEDQMSDAPLRHLAA 201


>gi|50955206|ref|YP_062494.1| GTP-binding protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951688|gb|AAT89389.1| GTP-binding protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 489

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 86/217 (39%), Gaps = 22/217 (10%)

Query: 186 NFSSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+  I+      + K     RN    + I G++NAGKSSL N + K 
Sbjct: 234 ELDRRRIHTRMAKLRKQIAGFKPAREAKRANRNRNAVPSVAIAGYTNAGKSSLLNRVTKA 293

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +   +  +G L  ++DT G          E  + T  EV ++D+I
Sbjct: 294 GVLVENALFATLDATVRRSVTADGRLYTLADTVGFVRNLPHQLVEAFRSTLEEVADSDVI 353

Query: 303 LLLKEINSKKEISF------------PKNIDFIFIGTKSDLYST-------YTEEYDHLI 343
           + + + +     S              ++I  I +  K+DL            E      
Sbjct: 354 VHVVDGSHPDPASQLATVRDVIGDVGARDIPEIVVFNKADLIPEDERLVLRGLEPGAIFA 413

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           S+ TGEG+EE++  I  +L +   ++   +P  +  L
Sbjct: 414 SARTGEGVEEVLAAIARLLPDPSVEVELIVPYDRGDL 450


>gi|119713399|gb|ABL97461.1| GTP-binding protein Era [uncultured marine bacterium HF130_81H07]
          Length = 294

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G +N GKS+L N++ +K +AI +  P TTR+ +      E   +   D+ G+    
Sbjct: 8   VSLTGRTNVGKSTLLNSIFQKKIAITSRKPQTTRNRILGIFSDEKNQIVFLDSPGVHSGH 67

Query: 282 DIVE-KEGIKRTFLEVENADLILLLKEINS--KKEISFPKN-----IDFIFIGTKS---- 329
                K   K      E  DL++ + +     ++E +  KN        I +  K     
Sbjct: 68  RRALNKYMNKVARTCYEEVDLVIFVIDRGRWLREEENILKNLKELDKPIILVINKIDRLK 127

Query: 330 ----------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                     DL S +  E    IS+   + LE+L++K+   + +     P         
Sbjct: 128 NRNGILPIMNDLNSKHNFEAIIPISALRKDNLEDLLSKVLEKIPSGEFHYPTIEEKEFSQ 187

Query: 380 LYHLSQTVR 388
            +++S+ +R
Sbjct: 188 SFYISEIIR 196


>gi|327330244|gb|EGE71993.1| GTP-binding protein HflX [Propionibacterium acnes HL097PA1]
          Length = 493

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 31/220 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQ---GKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK- 242
           + +  ++  + +     +HI      K  + IRN    + I+G++NAGKSSL N L +  
Sbjct: 237 TDRRRISHRIAVLRRRLTHIESTRASKRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAG 296

Query: 243 ---DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + A+   +  TTR   T     +G +  ++DT G          E    T  E   A
Sbjct: 297 VLVENALFATLDPTTRRATT----SDGRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMA 352

Query: 300 DLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE-------EYD 340
           D++L + + +    +                NI  I +  K D  S  T           
Sbjct: 353 DVLLHVVDADDPDPLGQVDAVRGVLSGIGASNIPEILVLNKIDRLSDETILTLRSTFPGA 412

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +L+S+ TGEG+++L+  I++ L    +++   IP  +  L
Sbjct: 413 YLVSAHTGEGIDKLVEAIEAGLPIPSQRVDVVIPYARGDL 452


>gi|313764468|gb|EFS35832.1| GTP-binding protein HflX [Propionibacterium acnes HL013PA1]
 gi|313812955|gb|EFS50669.1| GTP-binding protein HflX [Propionibacterium acnes HL025PA1]
 gi|313816006|gb|EFS53720.1| GTP-binding protein HflX [Propionibacterium acnes HL059PA1]
 gi|314915460|gb|EFS79291.1| GTP-binding protein HflX [Propionibacterium acnes HL005PA4]
 gi|314918256|gb|EFS82087.1| GTP-binding protein HflX [Propionibacterium acnes HL050PA1]
 gi|314920069|gb|EFS83900.1| GTP-binding protein HflX [Propionibacterium acnes HL050PA3]
 gi|314932083|gb|EFS95914.1| GTP-binding protein HflX [Propionibacterium acnes HL067PA1]
 gi|314955744|gb|EFT00144.1| GTP-binding protein HflX [Propionibacterium acnes HL027PA1]
 gi|314958159|gb|EFT02262.1| GTP-binding protein HflX [Propionibacterium acnes HL002PA1]
 gi|314967820|gb|EFT11919.1| GTP-binding protein HflX [Propionibacterium acnes HL037PA1]
 gi|315098523|gb|EFT70499.1| GTP-binding protein HflX [Propionibacterium acnes HL059PA2]
 gi|315101119|gb|EFT73095.1| GTP-binding protein HflX [Propionibacterium acnes HL046PA1]
 gi|315105395|gb|EFT77371.1| GTP-binding protein HflX [Propionibacterium acnes HL030PA1]
 gi|315108340|gb|EFT80316.1| GTP-binding protein HflX [Propionibacterium acnes HL030PA2]
 gi|327450795|gb|EGE97449.1| GTP-binding protein HflX [Propionibacterium acnes HL087PA3]
 gi|327453860|gb|EGF00515.1| GTP-binding protein HflX [Propionibacterium acnes HL083PA2]
 gi|328754214|gb|EGF67830.1| GTP-binding protein HflX [Propionibacterium acnes HL087PA1]
 gi|328754535|gb|EGF68151.1| GTP-binding protein HflX [Propionibacterium acnes HL025PA2]
          Length = 493

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 31/220 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQ---GKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK- 242
           + +  ++  + +     +HI      K  + IRN    + I+G++NAGKSSL N L +  
Sbjct: 237 TDRRRISHRIAVLRRRLTHIESTRASKRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAG 296

Query: 243 ---DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + A+   +  TTR   T     +G +  ++DT G          E    T  E   A
Sbjct: 297 VLVENALFATLDPTTRRATT----SDGRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMA 352

Query: 300 DLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE-------EYD 340
           D++L + + +    +                NI  I +  K D  S  T           
Sbjct: 353 DVLLHVVDADDPDPLGQVDAVRGVLSGIGASNIPEILVLNKIDRLSDETILTLRSTFPGA 412

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +L+S+ TGEG+++L+  I++ L    +++   IP  +  L
Sbjct: 413 YLVSAHTGEGIDKLVEAIEAGLPIPSQRVDVVIPYARGDL 452


>gi|284990195|ref|YP_003408749.1| GTP-binding protein Era [Geodermatophilus obscurus DSM 43160]
 gi|284063440|gb|ADB74378.1| GTP-binding protein Era [Geodermatophilus obscurus DSM 43160]
          Length = 305

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+   ++G  NAGK++L NAL  + V IV++ P TTR  +   +   G  + + DT 
Sbjct: 9   YRSGF-ACLVGRPNAGKTTLTNALVGEKVGIVSNRPQTTRHAIRGVVHRPGGQLVLVDTP 67

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           G+ +   ++ +         +   D+++     +  
Sbjct: 68  GLHKPRSLLGRRLNDVVRDTLSEVDVVVFCVPADQP 103


>gi|91227851|ref|ZP_01262024.1| GTP-binding protein Era [Vibrio alginolyticus 12G01]
 gi|269965786|ref|ZP_06179883.1| GTP-binding protein [Vibrio alginolyticus 40B]
 gi|91188361|gb|EAS74657.1| GTP-binding protein Era [Vibrio alginolyticus 12G01]
 gi|269829654|gb|EEZ83891.1| GTP-binding protein [Vibrio alginolyticus 40B]
          Length = 320

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 29  IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 88

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L+  L +        E+   K    N   +    K D   
Sbjct: 89  KRAINRLMNRAANSSLSDVNLVFFLVDGTHWTKDDEMVLTKLQKSNFPVVLCVNKVDNVQ 148

Query: 334 TYTEEYDHL--------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H+              IS+  G+ ++ L   +++ L       P    + +  
Sbjct: 149 DRNDVMLHMAEMSKKMDFVDVVPISAKQGKNIDVLRKHVRNHLPKATHHFPEEYVTDRSQ 208

Query: 380 LYHLSQTVR 388
            +  S+ VR
Sbjct: 209 RFMASEIVR 217


>gi|50842504|ref|YP_055731.1| GTP-binding protein [Propionibacterium acnes KPA171202]
 gi|50840106|gb|AAT82773.1| GTP-binding protein [Propionibacterium acnes KPA171202]
          Length = 483

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 31/220 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQ---GKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK- 242
           + +  ++  + +     +HI      K  + IRN    + I+G++NAGKSSL N L +  
Sbjct: 227 TDRRRISHRIAVLRRRLTHIESTRASKRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAG 286

Query: 243 ---DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + A+   +  TTR   T     +G +  ++DT G          E    T  E   A
Sbjct: 287 VLVENALFATLDPTTRRATT----SDGRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMA 342

Query: 300 DLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE-------EYD 340
           D++L + + +    +                NI  I +  K D  S  T           
Sbjct: 343 DVLLHVVDADDPDPLGQVDAVRGVLSGIGASNIPEILVLNKIDRLSDETILTLRSTFPGA 402

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +L+S+ TGEG+++L+  I++ L    +++   IP  +  L
Sbjct: 403 YLVSAHTGEGIDKLVEAIEAGLPIPSQRVDVVIPYARGDL 442


>gi|313772407|gb|EFS38373.1| GTP-binding protein Era [Propionibacterium acnes HL074PA1]
 gi|313807417|gb|EFS45904.1| GTP-binding protein Era [Propionibacterium acnes HL087PA2]
 gi|313809925|gb|EFS47646.1| GTP-binding protein Era [Propionibacterium acnes HL083PA1]
 gi|313818463|gb|EFS56177.1| GTP-binding protein Era [Propionibacterium acnes HL046PA2]
 gi|313820226|gb|EFS57940.1| GTP-binding protein Era [Propionibacterium acnes HL036PA1]
 gi|313822965|gb|EFS60679.1| GTP-binding protein Era [Propionibacterium acnes HL036PA2]
 gi|313825107|gb|EFS62821.1| GTP-binding protein Era [Propionibacterium acnes HL063PA1]
 gi|313830256|gb|EFS67970.1| GTP-binding protein Era [Propionibacterium acnes HL007PA1]
 gi|313834057|gb|EFS71771.1| GTP-binding protein Era [Propionibacterium acnes HL056PA1]
 gi|314925454|gb|EFS89285.1| GTP-binding protein Era [Propionibacterium acnes HL036PA3]
 gi|314960100|gb|EFT04202.1| GTP-binding protein Era [Propionibacterium acnes HL002PA2]
 gi|314973262|gb|EFT17358.1| GTP-binding protein Era [Propionibacterium acnes HL053PA1]
 gi|314975937|gb|EFT20032.1| GTP-binding protein Era [Propionibacterium acnes HL045PA1]
 gi|314978306|gb|EFT22400.1| GTP-binding protein Era [Propionibacterium acnes HL072PA2]
 gi|314984045|gb|EFT28137.1| GTP-binding protein Era [Propionibacterium acnes HL005PA1]
 gi|314987808|gb|EFT31899.1| GTP-binding protein Era [Propionibacterium acnes HL005PA2]
 gi|314990029|gb|EFT34120.1| GTP-binding protein Era [Propionibacterium acnes HL005PA3]
 gi|315080746|gb|EFT52722.1| GTP-binding protein Era [Propionibacterium acnes HL078PA1]
 gi|315084416|gb|EFT56392.1| GTP-binding protein Era [Propionibacterium acnes HL027PA2]
 gi|315085756|gb|EFT57732.1| GTP-binding protein Era [Propionibacterium acnes HL002PA3]
 gi|315088826|gb|EFT60802.1| GTP-binding protein Era [Propionibacterium acnes HL072PA1]
 gi|315096174|gb|EFT68150.1| GTP-binding protein Era [Propionibacterium acnes HL038PA1]
 gi|327326091|gb|EGE67881.1| GTP-binding protein Era [Propionibacterium acnes HL096PA2]
 gi|327332038|gb|EGE73775.1| GTP-binding protein Era [Propionibacterium acnes HL096PA3]
 gi|327443241|gb|EGE89895.1| GTP-binding protein Era [Propionibacterium acnes HL013PA2]
 gi|327446027|gb|EGE92681.1| GTP-binding protein Era [Propionibacterium acnes HL043PA2]
 gi|327447995|gb|EGE94649.1| GTP-binding protein Era [Propionibacterium acnes HL043PA1]
 gi|328753568|gb|EGF67184.1| GTP-binding protein Era [Propionibacterium acnes HL020PA1]
 gi|328760408|gb|EGF73976.1| GTP-binding protein Era [Propionibacterium acnes HL099PA1]
          Length = 342

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 34/231 (14%)

Query: 209 QGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
             ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E
Sbjct: 29  TARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDE 88

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEIS 315
              + + DT G+ +   ++ +      F      D+I +    N +          +   
Sbjct: 89  KSQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAE 148

Query: 316 FPKNIDFIFIGTKSDLYS------------TYTEEYDH------LISSFTGEGLEELINK 357
            P+    I + TKSDL S                E           S+ +GE ++E+ + 
Sbjct: 149 LPRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDV 208

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLDII 405
           I S+L       P    + +     +++ +R   +  + E       ++I+
Sbjct: 209 IASLLPEGPAYYPDGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIV 259


>gi|260893470|ref|YP_003239567.1| GTP-binding proten HflX [Ammonifex degensii KC4]
 gi|260865611|gb|ACX52717.1| GTP-binding proten HflX [Ammonifex degensii KC4]
          Length = 408

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 89/196 (45%), Gaps = 19/196 (9%)

Query: 190 KEVLNDILFLKNDISSHISQGK--LGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDV-A 245
           + +   I  L+ ++    +          R+G  +V ++G++NAGKS+L NALA +    
Sbjct: 161 RALRRRITELRRELEEVRASRDLLRRHRQRSGIPVVSLVGYTNAGKSTLLNALAGEGKEV 220

Query: 246 IVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +  D    T D ++  + L  G +  ++DT G  +      KE  K T  E+E ADL+L 
Sbjct: 221 LAEDRLFATLDPVSRRVILPSGRVFLLTDTVGFIKDLPPKLKEAFKATLEELETADLLLH 280

Query: 305 LKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           + ++ S              +E+   +    + +  K D Y+        +IS+     L
Sbjct: 281 VIDLTSPYLDEQQRAVESLLEELGLAEK-PILKVYNKVDRYTGILPADGVVISALKKINL 339

Query: 352 EELINKIKSILSNKFK 367
           ++L+++I++ L  + +
Sbjct: 340 DQLLHQIEARLFPEEE 355


>gi|86357029|ref|YP_468921.1| GTP-binding protein Era [Rhizobium etli CFN 42]
 gi|86281131|gb|ABC90194.1| GTP-binding protein [Rhizobium etli CFN 42]
          Length = 313

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 80/198 (40%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 24  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSDLY- 332
             +++  +   +   ++ADLI+LL +       +++  +   K      I +  K D   
Sbjct: 84  RRLDRAMVTSAWGGAKDADLIMLLIDSERGLRGDAEAILEGLKEVQQPKILVLNKIDRVN 143

Query: 333 ------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                            +   +IS+ TG G +++++ + S L       P    S     
Sbjct: 144 REDLLALAASANEKIAFDRTFMISAETGSGCDDVMDYLASTLPEGPWYYPEDQISDLPMR 203

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+++
Sbjct: 204 QLAAEITREKLFLRLHQE 221


>gi|253681508|ref|ZP_04862305.1| GTP-binding protein [Clostridium botulinum D str. 1873]
 gi|253561220|gb|EES90672.1| GTP-binding protein [Clostridium botulinum D str. 1873]
          Length = 397

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 21/170 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           N   I + G +N+GKSS+ NA+  +D+++V+++ GTT D ++  ++L     V   DTAG
Sbjct: 8   NRKHIALYGKTNSGKSSILNAIIGQDISLVSNVKGTTTDPVSKAMELIPFGPVLFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           I +   +     ++RT   +E  DL + + +IN+  E  +           I +I +  K
Sbjct: 68  IDDESQLGNLR-VERTLKTLEKTDLAIYIMDINNIDENEYKDFQNKLKEHRIPYITVINK 126

Query: 329 SD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
            D         L S + E     +S    E +  L +++   L    +  
Sbjct: 127 IDTVSISYINFLKSKFKECL--FVSCKDNESILYLKDELIKRLQKDEEDE 174


>gi|295130581|ref|YP_003581244.1| GTP-binding protein HflX [Propionibacterium acnes SK137]
 gi|291375198|gb|ADD99052.1| GTP-binding protein HflX [Propionibacterium acnes SK137]
 gi|313772150|gb|EFS38116.1| GTP-binding protein HflX [Propionibacterium acnes HL074PA1]
 gi|313792154|gb|EFS40255.1| GTP-binding protein HflX [Propionibacterium acnes HL110PA1]
 gi|313810014|gb|EFS47735.1| GTP-binding protein HflX [Propionibacterium acnes HL083PA1]
 gi|313830342|gb|EFS68056.1| GTP-binding protein HflX [Propionibacterium acnes HL007PA1]
 gi|313833716|gb|EFS71430.1| GTP-binding protein HflX [Propionibacterium acnes HL056PA1]
 gi|313838719|gb|EFS76433.1| GTP-binding protein HflX [Propionibacterium acnes HL086PA1]
 gi|314973347|gb|EFT17443.1| GTP-binding protein HflX [Propionibacterium acnes HL053PA1]
 gi|314976024|gb|EFT20119.1| GTP-binding protein HflX [Propionibacterium acnes HL045PA1]
 gi|314983954|gb|EFT28046.1| GTP-binding protein HflX [Propionibacterium acnes HL005PA1]
 gi|315078029|gb|EFT50080.1| GTP-binding protein HflX [Propionibacterium acnes HL053PA2]
 gi|315080654|gb|EFT52630.1| GTP-binding protein HflX [Propionibacterium acnes HL078PA1]
 gi|315096262|gb|EFT68238.1| GTP-binding protein HflX [Propionibacterium acnes HL038PA1]
 gi|327326174|gb|EGE67964.1| GTP-binding protein HflX [Propionibacterium acnes HL096PA2]
 gi|327445938|gb|EGE92592.1| GTP-binding protein HflX [Propionibacterium acnes HL043PA2]
 gi|327448083|gb|EGE94737.1| GTP-binding protein HflX [Propionibacterium acnes HL043PA1]
 gi|327453128|gb|EGE99782.1| GTP-binding protein HflX [Propionibacterium acnes HL092PA1]
 gi|328760604|gb|EGF74171.1| GTP-binding protein HflX [Propionibacterium acnes HL099PA1]
          Length = 493

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 31/220 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQ---GKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK- 242
           + +  ++  + +     +HI      K  + IRN    + I+G++NAGKSSL N L +  
Sbjct: 237 TDRRRISHRIAVLRRRLTHIESTRASKRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAG 296

Query: 243 ---DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + A+   +  TTR   T     +G +  ++DT G          E    T  E   A
Sbjct: 297 VLVENALFATLDPTTRRATT----SDGRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMA 352

Query: 300 DLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE-------EYD 340
           D++L + + +    +                NI  I +  K D  S  T           
Sbjct: 353 DVLLHVVDADDPDPLGQVDAVRGVLSGIGASNIPEILVLNKIDRLSDETILTLRSTFPGA 412

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +L+S+ TGEG+++L+  I++ L    +++   IP  +  L
Sbjct: 413 YLVSAHTGEGIDKLVEAIEAGLPIPSQRVDVVIPYARGDL 452


>gi|153009953|ref|YP_001371168.1| GTP-binding protein Era [Ochrobactrum anthropi ATCC 49188]
 gi|151561841|gb|ABS15339.1| GTP-binding protein Era [Ochrobactrum anthropi ATCC 49188]
          Length = 311

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++      +   + + DT G
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEDQAQIVLVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFI--FIGTK 328
           I      +++  +   +   ++AD+IL+L +       N++  +S  K++      +  K
Sbjct: 77  IFRPKRRLDRAMVTTAWGGAKDADIILVLLDSQGGLNENAEALLSSMKDVRRKKVLVLNK 136

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D                    +   +IS+  G G ++L   +   + N     P    S
Sbjct: 137 VDRVDPPVLLELARKANELVAFDQTFMISALNGSGCKDLAKYLAENVPNGPWYYPEDQIS 196

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+E+
Sbjct: 197 DMPMRQLAAEITREKLYLRLHEE 219


>gi|332970473|gb|EGK09463.1| GTP-binding protein HflX [Psychrobacter sp. 1501(2011)]
          Length = 491

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 115/310 (37%), Gaps = 27/310 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  ++   + L   W   L   +  I        + +      +  ++
Sbjct: 116 RARTYEGKLQVELAQLNHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLQIRVS 174

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +    + +    +QG+      +   I ++G++NAGKSSLFN L  +++    D    T
Sbjct: 175 QLKARLDKVKQTRAQGRAKRQKSDVLTISLVGYTNAGKSSLFNRLVNENI-YAADQLFAT 233

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     LD +G   V + DT G          E    T  E   ADL+L + +  S   
Sbjct: 234 LDPTLRRLDWQGVGRVVLVDTVGFVRHLPHELVESFHATLEETLEADLLLHVIDSASADM 293

Query: 314 -----------ISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLISSFTGEGLEEL 354
                           ++  + +  K DL        YS         +S+    G+  L
Sbjct: 294 HEQIKAVKSVLAEINNDVPVLNVYNKIDLTGEPAQINYSEPGVPSRVYVSAKADLGMSML 353

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
              ++ +L+ K      ++P +  +L +  +  R   +      + G +I+   LRL + 
Sbjct: 354 TTAVQQLLTGKLNTFELTLPFNAGNLKN--ELYRLDVVEQEGYAESGHEILT--LRLPAD 409

Query: 415 SLGKITGCVD 424
            L ++ G  D
Sbjct: 410 KLQQLLGQSD 419


>gi|188590462|ref|YP_001922641.1| GTP-binding protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188500743|gb|ACD53879.1| GTP-binding protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 397

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  NAGKSSL NAL  + +++V+D PGTT D ++  ++L     V I DTAG
Sbjct: 8   NRLHISIFGKRNAGKSSLINALTNQPLSLVSDTPGTTTDPVSKAMELLPLGPVVIIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISF-----PKNIDFIFIGTK 328
           + +T D+     +++T   +   DL +L+    + N + E  +      KNI  I +  K
Sbjct: 68  LDDTGDLGTLR-VEKTKEVMLKTDLAVLVFSAEDNNIENEKEWFKDLKQKNIPVIGVINK 126

Query: 329 SDL----YSTYTEEYDHLI---SSFTGEGLEELINKI 358
            DL         +E+D      SS     + +    +
Sbjct: 127 IDLGMSNLELLQKEFDIPFVEISSREKINIGKFKELL 163


>gi|82702877|ref|YP_412443.1| GTP-binding protein Era [Nitrosospira multiformis ATCC 25196]
 gi|82410942|gb|ABB75051.1| GTP-binding protein Era [Nitrosospira multiformis ATCC 25196]
          Length = 302

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 22/205 (10%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + R+GY I I+G  N GKS+L N L  + ++I +    TTR  +      E       DT
Sbjct: 11  VYRSGY-IAIVGRPNVGKSTLLNRLVGQKISITSKKSQTTRHRIHGIFTDEYSQFVFVDT 69

Query: 275 AGIRETDDIVEKEGIKR-TFLEVENADLILLLKEI---NSKKEI---SFPKNIDFIFIGT 327
            G +         G+ R     + + D+++L+ E    + + ++     PK+   +    
Sbjct: 70  PGFQTRHTNRLNSGMNRLVTQTLRDVDIVILVIEAMRFDDRDKLVVKLLPKSKPVVLALN 129

Query: 328 KSD----------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D               ++E+D      IS+  G  L ELI  I+  L           
Sbjct: 130 KIDRLTDKSQLLPFLEKMSKEFDFAAMVPISAENGGQLPELIAAIRPHLPQNPPLFLEDE 189

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            + +   +  ++ VR      L E+
Sbjct: 190 VTDRDERFIAAELVREKLFRLLGEE 214


>gi|326202948|ref|ZP_08192815.1| GTP-binding proten HflX [Clostridium papyrosolvens DSM 2782]
 gi|325987025|gb|EGD47854.1| GTP-binding proten HflX [Clostridium papyrosolvens DSM 2782]
          Length = 596

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 20/232 (8%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
           +L+ +   I       ++ +V     +  +  +      +       +      N   I 
Sbjct: 322 QLSRLGGGIGTRGPGEKKLEVDRRHIRRRITGLEQELKQLEKRREFLRSNRTSNNTPVIA 381

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDD 282
           I+G++NAGKS+L N +   +V +V D    T D     L + +G    + DT G      
Sbjct: 382 IVGYTNAGKSTLLNRMCGSEV-LVEDKLFATLDPSARQLTMSDGREAILVDTVGFIRKLP 440

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPKN---------IDFIFIGTKSD 330
               E  K T  E  +AD++L + + +++    +IS  +           + I +  K D
Sbjct: 441 HDLIEAFKSTLEEAVHADMLLHVVDASNENVSMQISVVEKLLEELGASTKNTILVLNKQD 500

Query: 331 LYSTYTEEYDHLISSF------TGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           L            SS       TG G+E+L+ KI     ++ K++   +P +
Sbjct: 501 LIKDGRRISTVGYSSVCEISASTGFGIEQLLEKITEGFMHQLKEVNLLVPYN 552


>gi|253580120|ref|ZP_04857387.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848639|gb|EES76602.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 411

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 108/289 (37%), Gaps = 22/289 (7%)

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           A  I+SE ++Q  L+                + L+ +   I       ++ +      + 
Sbjct: 114 ARAITSEGKIQVELAQLRYRSA---RLVGLRESLSRLGGGIGTRGPGEKKLETDRRLIRT 170

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            ++ +    + +  H    +      N     I+G++NAGKS+L N L   +V +  D  
Sbjct: 171 RISALKQELSQVEKHRELIRSSRARGNMKTAAIVGYTNAGKSTLLNTLTGSEV-LSEDKL 229

Query: 252 GTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D  T  L+L +G  + ++DT G          E  K T  E + AD I+ + + ++
Sbjct: 230 FATLDPTTRLLNLKDGQQILLTDTVGFIHKLPHHLVEAFKSTLEEAKYADYIIHVVDSSN 289

Query: 311 KKEISFPK------------NIDFIFIGTKSD-----LYSTYTEEYDHLISSFTGEGLEE 353
           ++                      I +  K D     +   +  +Y   +S+ TGEGL +
Sbjct: 290 QQAEMQMHVVYETLKELGVMGKKIITLFNKQDAPGACVLRDFKSDYTLKVSAKTGEGLAD 349

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           L + ++ +L+ +   +    P  +     L +    L      E+   +
Sbjct: 350 LNDLLEKLLAEEQIYVERLFPYQEAGKIQLIREYGQLISEEYTEEGIAV 398


>gi|126663305|ref|ZP_01734303.1| putative GTP-binding protein [Flavobacteria bacterium BAL38]
 gi|126624963|gb|EAZ95653.1| putative GTP-binding protein [Flavobacteria bacterium BAL38]
          Length = 294

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 78/187 (41%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ + + V  SDT GI +  
Sbjct: 8   VNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGDDFQVLFSDTPGIIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPK----NIDFIFIGTKSDL--- 331
             ++   +       E+AD+++ + EI  K+   E  F K     I  + +  K D    
Sbjct: 68  YELQNSMMDFVKSAFEDADILVYMVEIGEKELKDEAFFNKIIHSKIPVLLLLNKIDKSNQ 127

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                                IS+     ++ + ++I  +L       P    + K   +
Sbjct: 128 EQLEEQVQAWKEKVPNAELFPISALENFNVQTVFDRIIELLPVSPAFYPKDALTDKPERF 187

Query: 382 HLSQTVR 388
            +++T+R
Sbjct: 188 FVNETIR 194


>gi|319892329|ref|YP_004149204.1| GTP-binding protein HflX [Staphylococcus pseudintermedius HKU10-03]
 gi|317162025|gb|ADV05568.1| GTP-binding protein HflX [Staphylococcus pseudintermedius HKU10-03]
 gi|323464572|gb|ADX76725.1| GTP-binding protein, putative [Staphylococcus pseudintermedius
           ED99]
          Length = 410

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 19/241 (7%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +N+I     ++ +H  + +        +++
Sbjct: 148 KSLSRLGGGIGTRGPGETKLETDRRHIRTRMNEIKRKLAEVEAHRERYRNQREQNRVFQV 207

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETD 281
            ++G++NAGKSS FN L   D     D+   T D  +  L + +G+ + ISDT G  +  
Sbjct: 208 ALIGYTNAGKSSWFNTLTAAD-TYEQDLLFATLDPKSRQLKINDGFEMVISDTVGFIQKL 266

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTKS 329
                E  K T  E   ADL++ + + +  +            +    ++I  + I  K 
Sbjct: 267 PTTLIEAFKSTLEEARQADLLIHVVDASHAEYKIQYDTVNEIVQELDMQDIPQVVIFNKK 326

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH-----KRHLYHLS 384
           DL++  T       S F     E  I K+K++L    +K      +         LYHL 
Sbjct: 327 DLFTGTTTPVTQYPSVFVSSKNEADIEKVKNLLFQAIQKQFDFYTAQLPSSAADQLYHLK 386

Query: 385 Q 385
           Q
Sbjct: 387 Q 387


>gi|119713602|gb|ABL97653.1| GTP-binding protein Era [uncultured marine bacterium EB0_39H12]
          Length = 297

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 22/196 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           + +++GY + I+G +NAGKS+L N +  + +AI +  P TTR             +   D
Sbjct: 2   KRLKSGY-VSIVGKTNAGKSTLLNNILGQKIAITSRKPQTTRHRFQGIKTKGQNQIIFVD 60

Query: 274 TAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIG 326
           T G        + +   K     +   D++L + +       + K+  +       I + 
Sbjct: 61  TPGFHSGQKRALNRYMNKVASNAMRGVDIVLYMVDNLRWSEEDLKRLKTISDETFVILVI 120

Query: 327 TKSD------LYSTYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            K D      L   Y EE            IS+  G G+E+L+  I   L ++    P  
Sbjct: 121 NKIDKLENKNLLLPYIEERSKENLFSNIIPISALKGNGVEDLVKSISEKLPSRDHLYPED 180

Query: 373 IPSHKRHLYHLSQTVR 388
             +     +  S+ +R
Sbjct: 181 QVTDISEKFLASEVIR 196


>gi|116251278|ref|YP_767116.1| GTP-binding protein Era [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255926|emb|CAK07007.1| putative GTP and RNA-binding cell cycle regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 313

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 77/198 (38%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 24  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKSDLY- 332
             +++  +   +    +ADLI+LL +       +++  +   K      I +  K D   
Sbjct: 84  RRLDRAMVTSAWGGARDADLIVLLIDSERGLRGDAEAILEGLKEVRQPKILLLNKIDRVN 143

Query: 333 ------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                            +   +IS+  G G ++L++ +   L       P    S     
Sbjct: 144 REDLLALAAAANEKIAFDRTFMISAENGSGCDDLMDYLAKTLPEGPWYYPEDQISDLPMR 203

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+++
Sbjct: 204 QLAAEITREKLFLRLHQE 221


>gi|162454228|ref|YP_001616595.1| GTP binding protein [Sorangium cellulosum 'So ce 56']
 gi|161164810|emb|CAN96115.1| GTP binding protein [Sorangium cellulosum 'So ce 56']
          Length = 310

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 41/93 (44%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NA     +AIV+  P TTRD +   +      + + DT G+    
Sbjct: 1   MALVGRPNVGKSTLLNAALGHPLAIVSPTPQTTRDAILGVVHHGPAEIALLDTPGLHRPR 60

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
             + +   +        AD+I+ + E      +
Sbjct: 61  TELGRVMNQAAREAARGADVIVFVTEAPDPARL 93


>gi|28211008|ref|NP_781952.1| GTP-binding protein [Clostridium tetani E88]
 gi|28203447|gb|AAO35889.1| GTP-binding protein [Clostridium tetani E88]
          Length = 396

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 19/184 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I  LG  NAGKSS+ NA++ + V+IV+++ GTT D +   ++L     + + DTAG
Sbjct: 8   NRIHIAFLGRRNAGKSSIINAISNQQVSIVSNVAGTTTDPVYKAMELFPIGPIMLIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
           + +   I     I++T   +   D+ ++  +  ++        KE    + I  I    K
Sbjct: 68  LDDEGYIGNLR-IEKTKEIMNKTDIAVIAIDCKNENFEYEMYLKEKLSKRKIPTIIALNK 126

Query: 329 SDLYSTYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            D  +   E         +    IS+   E +++L  KI   + +  +        +K+ 
Sbjct: 127 IDKVANLDEAIVRARKQFDNIVSISALRRENIDKLKEKIIEQVPSNNETTLLEGIVNKKD 186

Query: 380 LYHL 383
           L  L
Sbjct: 187 LVLL 190


>gi|289425141|ref|ZP_06426918.1| GTP-binding protein HflX [Propionibacterium acnes SK187]
 gi|289154119|gb|EFD02807.1| GTP-binding protein HflX [Propionibacterium acnes SK187]
          Length = 483

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 31/220 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQ---GKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK- 242
           + +  ++  + +     +HI      K  + IRN    + I+G++NAGKSSL N L +  
Sbjct: 227 TDRRRISHRIAVLRRRLTHIESTRASKRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAG 286

Query: 243 ---DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + A+   +  TTR   T     +G +  ++DT G          E    T  E   A
Sbjct: 287 VLVENALFATLDPTTRRATT----SDGRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMA 342

Query: 300 DLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE-------EYD 340
           D++L + + +    +                NI  I +  K D  S  T           
Sbjct: 343 DVLLHVVDADDPDPLGQVDAVRGVLSGIGASNIPEILVLNKIDRLSDETILTLRSTFPGA 402

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +L+S+ TGEG+++L+  I++ L    +++   IP  +  L
Sbjct: 403 YLVSAHTGEGIDKLVEAIEAGLPIPSQRVDVVIPYARGDL 442


>gi|188581485|ref|YP_001924930.1| GTP-binding protein Era [Methylobacterium populi BJ001]
 gi|179344983|gb|ACB80395.1| GTP-binding protein Era [Methylobacterium populi BJ001]
          Length = 319

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 72/193 (37%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L NAL    V+IV+    TTR ++   +      V + DT G
Sbjct: 25  RAGF-VALIGVPNAGKSTLLNALVGAKVSIVSRKVQTTRALVRGIVMEGDAQVVLVDTPG 83

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           I      +++  +   +    +AD + LL +     +                 I I  K
Sbjct: 84  IFAPKRRLDRAMVHSAWSGAADADAVCLLIDARKGADDEVETILRRLPEVKRPKILILNK 143

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL +                 E   LIS+  G+G+ +L   + + +       P    S
Sbjct: 144 IDLIARERLLELVAKLNAMVPFEDTFLISALNGDGVADLRKALAARMPPGPWLYPEDQIS 203

Query: 376 HKRHLYHLSQTVR 388
                   ++  R
Sbjct: 204 DAPLRMLAAEITR 216


>gi|289427040|ref|ZP_06428756.1| GTP-binding protein Era [Propionibacterium acnes J165]
 gi|295130499|ref|YP_003581162.1| GTP-binding protein Era [Propionibacterium acnes SK137]
 gi|289159509|gb|EFD07697.1| GTP-binding protein Era [Propionibacterium acnes J165]
 gi|291377214|gb|ADE01069.1| GTP-binding protein Era [Propionibacterium acnes SK137]
 gi|332675335|gb|AEE72151.1| GTP-binding protein Era [Propionibacterium acnes 266]
          Length = 340

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 34/231 (14%)

Query: 209 QGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
             ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E
Sbjct: 27  TARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDE 86

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEIS 315
              + + DT G+ +   ++ +      F      D+I +    N +          +   
Sbjct: 87  KSQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAE 146

Query: 316 FPKNIDFIFIGTKSDLYS------------TYTEEYDH------LISSFTGEGLEELINK 357
            P+    I + TKSDL S                E           S+ +GE ++E+ + 
Sbjct: 147 LPRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDV 206

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLDII 405
           I S+L       P    + +     +++ +R   +  + E       ++I+
Sbjct: 207 IASLLPEGPAYYPDGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIV 257


>gi|154339145|ref|XP_001562264.1| GTP-binding protein-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134062847|emb|CAM39292.1| putative ras-like small GTPases [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 511

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 105/285 (36%), Gaps = 48/285 (16%)

Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSM--EGMSGELSSLYGQWIDKLTHIRSFIEAD 175
               K+DL+  E  A ++     +    ++       E   +    ++ L HI +  + +
Sbjct: 154 LLVNKMDLVPEEDEALVLDVYNHLGLGNAIPFSARKREGLDMLSALLEPLYHIHAMRKVE 213

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
            D+    D+++ +       +  +++                   ++ I+G +N+GK+SL
Sbjct: 214 NDW----DIEDLAMSGDEAAMEEIRD-----------RNCTEQYIRVAIVGRTNSGKTSL 258

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI----RETDDIVEKEGIKR 291
            N L   +     D   TTRD + I    +G  +K+ DTAG+      TD          
Sbjct: 259 VNRLLGYERNRAADATNTTRDPIEIPCTYKGKKLKLIDTAGLARQRYRTDREFLSCIHNL 318

Query: 292 TFLEVENADLILLLKEINS----KKEISFP-----KNIDFIFIGTKSDLY---STYTEEY 339
           +  E+  A +++++ +       K ++S       +   F+    K D     S   E  
Sbjct: 319 SLKEIRYAHVVIVVFDATEGHPNKYDMSILHTVAQEGRPFVLCANKWDAVLDQSATAEAI 378

Query: 340 DHLI---------------SSFTGEGLEELINKIKSILSNKFKKL 369
           D  I               S+ TG  L  L++++  +     K++
Sbjct: 379 DFKIKRQVQEVKYSSAVVVSAHTGMNLTLLMDQVLELYDTWNKRV 423



 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 81/233 (34%), Gaps = 45/233 (19%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
              ++ I+G  N+GKSSLFN L +         IV D  G TRD +     L      I 
Sbjct: 41  QRLRVAIVGRMNSGKSSLFNLLCQDPTMPAKKNIVKDFNGITRDCVEAHAVLNDLHFTII 100

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIF 324
           DT G+      V  + ++  F  VE AD  + +  ++           +    K +    
Sbjct: 101 DTPGL------VGGKLVEEAFRTVETADAAIFVTAVDEDVSTEEHDLIQYLAAKKLPACL 154

Query: 325 IGTKSDLYSTYTEEY------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           +  K DL     E                  S+   EGL+ L   ++ +      +    
Sbjct: 155 LVNKMDLVPEEDEALVLDVYNHLGLGNAIPFSARKREGLDMLSALLEPLYHIHAMRK--- 211

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425
              +   +  L+ +     M  + +++C      + +R+A      I G  + 
Sbjct: 212 -VENDWDIEDLAMSGDEAAMEEIRDRNCTE----QYIRVA------IVGRTNS 253


>gi|331268843|ref|YP_004395335.1| GTP-binding protein [Clostridium botulinum BKT015925]
 gi|329125393|gb|AEB75338.1| GTP-binding protein [Clostridium botulinum BKT015925]
          Length = 397

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 24/177 (13%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           N   +V  G +N+GKSS+ NA+  +++++V++I GTT D ++  ++L     V   DTAG
Sbjct: 8   NRKHVVFYGKTNSGKSSILNAIVGQEISLVSNIKGTTTDPVSKAMELIPFGPVLFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           I +  ++     ++RT   ++  D  + + +IN+  E  +           I +I +  K
Sbjct: 68  IDDKSELGNLR-VERTLKTLKKTDFAVYVMDINNIDENEYKDFQEKFKKHRIPYITVINK 126

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
            D              +     +  L +KIK  L    +     +   +  +  L +
Sbjct: 127 ID--------------TVNISYINFLKSKIKECLFVSSRDSESILYLKEELIKRLQE 169


>gi|313807506|gb|EFS45993.1| GTP-binding protein HflX [Propionibacterium acnes HL087PA2]
 gi|313818548|gb|EFS56262.1| GTP-binding protein HflX [Propionibacterium acnes HL046PA2]
 gi|313820315|gb|EFS58029.1| GTP-binding protein HflX [Propionibacterium acnes HL036PA1]
 gi|313822878|gb|EFS60592.1| GTP-binding protein HflX [Propionibacterium acnes HL036PA2]
 gi|313825190|gb|EFS62904.1| GTP-binding protein HflX [Propionibacterium acnes HL063PA1]
 gi|314925202|gb|EFS89033.1| GTP-binding protein HflX [Propionibacterium acnes HL036PA3]
 gi|314960015|gb|EFT04117.1| GTP-binding protein HflX [Propionibacterium acnes HL002PA2]
 gi|314978437|gb|EFT22531.1| GTP-binding protein HflX [Propionibacterium acnes HL072PA2]
 gi|314988138|gb|EFT32229.1| GTP-binding protein HflX [Propionibacterium acnes HL005PA2]
 gi|314989942|gb|EFT34033.1| GTP-binding protein HflX [Propionibacterium acnes HL005PA3]
 gi|315084326|gb|EFT56302.1| GTP-binding protein HflX [Propionibacterium acnes HL027PA2]
 gi|315085668|gb|EFT57644.1| GTP-binding protein HflX [Propionibacterium acnes HL002PA3]
 gi|315088910|gb|EFT60886.1| GTP-binding protein HflX [Propionibacterium acnes HL072PA1]
 gi|327331951|gb|EGE73688.1| GTP-binding protein HflX [Propionibacterium acnes HL096PA3]
 gi|327443152|gb|EGE89806.1| GTP-binding protein HflX [Propionibacterium acnes HL013PA2]
 gi|328753483|gb|EGF67099.1| GTP-binding protein HflX [Propionibacterium acnes HL020PA1]
          Length = 493

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 31/220 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQ---GKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK- 242
           + +  ++  + +     +HI      K  + IRN    + I+G++NAGKSSL N L +  
Sbjct: 237 TDRRRISHRIAVLRRRLTHIESTRASKRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAG 296

Query: 243 ---DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + A+   +  TTR   T     +G +  ++DT G          E    T  E   A
Sbjct: 297 VLVENALFATLDPTTRRATT----SDGRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMA 352

Query: 300 DLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE-------EYD 340
           D++L + + +    +                NI  I +  K D  S  T           
Sbjct: 353 DVLLHVVDADDPDPLGQVDAVRGVLSGIGASNIPEILVLNKIDRLSDETILTLRSTFPGA 412

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +L+S+ TGEG+++L+  I++ L    +++   IP  +  L
Sbjct: 413 YLVSAHTGEGIDKLVEAIEAGLPIPSQRVDVVIPYARGDL 452


>gi|295092645|emb|CBK78752.1| iron-only hydrogenase maturation protein HydF [Clostridium cf.
           saccharolyticum K10]
          Length = 432

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 18/205 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I   G  NAGKSSL NA   +D+A+V+D+ GTT D +   ++L       I DT G
Sbjct: 10  ERVHISFFGCRNAGKSSLLNAFTGQDLAVVSDVKGTTTDPVKKSMELLPLGPAVIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTK 328
           I +   +  +  +++T   +   D+ +L+ +  +   K++         K + ++    K
Sbjct: 70  IDDEGSLGGRR-VRKTRQILNMTDIAVLVADSQTGIRKEDRELAALFQEKEVPYVVAFNK 128

Query: 329 SDLYSTYTEEYDHLISSFTG--EGLEELI---NKIKSILSNKFKKLPFSIPSHKRHLYHL 383
            DL   +  +     ++ TG  EG+ E     N+  ++LS     LP S       +  L
Sbjct: 129 CDLTENHIPDIYKEETNKTGAKEGVPEDRGTENREAAVLSGAAAVLPVS-ARTGFGIEKL 187

Query: 384 SQTVRYLEMASLNEKDCGL--DIIA 406
            +T+ +++          L  D+++
Sbjct: 188 KETLAHIKTVEEGRDHVPLIGDLLS 212


>gi|291059918|gb|ADD72653.1| GTP-binding protein Era [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 321

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 15/205 (7%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G   R+G  + I+G  ++GKS+  NA+    V+IV+ IP TTR+ +   +++E   +   
Sbjct: 7   GASPRSGVSL-IIGRPSSGKSTFLNAVCGYKVSIVSPIPQTTRNTVRGIVNIESDQIVFM 65

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP------KNIDFI 323
           DT G   +D              V++AD++L L +      ++E +        +    +
Sbjct: 66  DTPGYHRSDRKFNLRLQSLVHSNVKDADVLLYLVDATRQFGEEEAAICALLAPYQKTRVL 125

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEE--LINKIKSILSNKFKKLPFSI-PSHKRHL 380
               K D+    T   +H      G  L    L   + + L +      F+I   H+  L
Sbjct: 126 LAFNKVDVLHNSTSCDEHAFLHRQGSVLRAGSLGRALHAALPHLPADRVFTISALHQVGL 185

Query: 381 YHLSQTVRYL--EMASLNEKDCGLD 403
             L +T+R L  E A L  +DC  D
Sbjct: 186 DALMRTLRDLLPEAAPLYPQDCYTD 210


>gi|120437318|ref|YP_863004.1| GTP-binding protein Era [Gramella forsetii KT0803]
 gi|117579468|emb|CAL67937.1| GTP-binding protein Era [Gramella forsetii KT0803]
          Length = 295

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +  
Sbjct: 8   VNIIGNPNVGKSTLMNAFIGERLSIITSKAQTTRHRILGIVNGEDFQMILSDTPGIIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLYST 334
             ++   +       E+AD+++ + EI     K E  F K     +  + +  K D  + 
Sbjct: 68  YELQASMMDFVKSAFEDADVLIYIVEIGEEGLKDEAFFNKISNSEVPVLLLLNKIDKSNQ 127

Query: 335 YTEE-------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
              E               H IS+  G  +  + N+I  +L       P    + K   +
Sbjct: 128 EQLEEQVQYWAEKVPTAEIHPISALEGFNVPAVFNRIIELLPESPAFYPKDTLTDKPERF 187

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 188 FVNEIIR 194


>gi|325577736|ref|ZP_08148011.1| GTP-binding protein Era [Haemophilus parainfluenzae ATCC 33392]
 gi|325160481|gb|EGC72607.1| GTP-binding protein Era [Haemophilus parainfluenzae ATCC 33392]
          Length = 304

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 73/190 (38%), Gaps = 24/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIR-E 279
           I I+G  N GKS+L N +  + ++I +    TTR  + + +  EG   +I  DT G+  E
Sbjct: 15  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-VGIKTEGIYQEIYVDTPGLHIE 73

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----------NIDFIFI 325
               + +   +     + + DLI+ + +    N+  E+   K                 I
Sbjct: 74  EKRAINRLMNRAASSAIGDVDLIIFVVDGTHWNADDEMVLNKLRNAKAPVVLAINKVDNI 133

Query: 326 GTKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
             K DL    T+        +   IS+  G  + +L   ++  L       P    + + 
Sbjct: 134 KNKDDLLPFITDLGSKFNFAHIVPISAQRGNNVHQLEKIVRQSLRKGVHHFPEDYVTDRS 193

Query: 379 HLYHLSQTVR 388
             +  S+ +R
Sbjct: 194 QRFMASEIIR 203


>gi|203284418|ref|YP_002222158.1| GTP-binding protein [Borrelia duttonii Ly]
 gi|203287952|ref|YP_002222967.1| GTP-binding protein [Borrelia recurrentis A1]
 gi|201083861|gb|ACH93452.1| GTP-binding protein [Borrelia duttonii Ly]
 gi|201085172|gb|ACH94746.1| GTP-binding protein [Borrelia recurrentis A1]
          Length = 440

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 9/155 (5%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +   S ++  +  +       + ++    L F +   V     K + +  +FL++ +   
Sbjct: 114 LRKYSDKVVLILNKVDSSHKEVLAYEFQKLGFRKSFLVSATHGKGINDLRIFLRDSV--- 170

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              GKL +      KI I+G  N+GKS+L N L+  +V+IV+ + GTTRD +        
Sbjct: 171 ---GKLSDDEHIDVKIGIIGKPNSGKSTLVNFLSGDEVSIVSSMAGTTRDFIKAKFQRNS 227

Query: 267 YLVKISDTAGIRET---DDIVEKEGIKRTFLEVEN 298
              ++ DTAGIR     ++I+E   + R    ++ 
Sbjct: 228 KTFELIDTAGIRRRARINEIIEHYSVSRALRVIDM 262



 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 72/177 (40%), Gaps = 16/177 (9%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G  I+N   ++I+G  N GKS+LFN L   + +I  ++ G TRD++     +  Y   + 
Sbjct: 5   GSKIQNYSSVLIVGRPNVGKSTLFNKLLSSNRSITNEVYGVTRDLVREICKINSYKFYLI 64

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEISFPKNI--DFIFI 325
           D  G     D + +  + +    +++ DLILL+ ++N       + I   +      + I
Sbjct: 65  DAGGFTLLKDELSQVVVNKVIGLLDSVDLILLVLDVNEILLEDYELIDRLRKYSDKVVLI 124

Query: 326 GTKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
             K D        Y+            S+  G+G+ +L   ++  +          +
Sbjct: 125 LNKVDSSHKEVLAYEFQKLGFRKSFLVSATHGKGINDLRIFLRDSVGKLSDDEHIDV 181


>gi|208779800|ref|ZP_03247144.1| GTP-binding protein Era [Francisella novicida FTG]
 gi|254373099|ref|ZP_04988588.1| hypothetical protein FTCG_00677 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570826|gb|EDN36480.1| hypothetical protein FTCG_00677 [Francisella novicida GA99-3549]
 gi|208744255|gb|EDZ90555.1| GTP-binding protein Era [Francisella novicida FTG]
          Length = 297

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 21/164 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N + K  V+I +  P TTR  +T    L        DT GI  + 
Sbjct: 7   ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSD--- 330
              + K   K      +  D+IL + E+    E+            I    +  K D   
Sbjct: 67  PKAINKFMNKAATTMFKEVDVILFVVEMGKWTELEDNIVEKLKHSEIPIFLVVNKVDKKK 126

Query: 331 ------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSN 364
                    +  E+         S+  G  + EL ++I+ +L  
Sbjct: 127 SLEAAMFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLLPE 170


>gi|289427265|ref|ZP_06428981.1| GTP-binding protein HflX [Propionibacterium acnes J165]
 gi|289159734|gb|EFD07922.1| GTP-binding protein HflX [Propionibacterium acnes J165]
 gi|332675421|gb|AEE72237.1| GTP-binding protein HflX [Propionibacterium acnes 266]
          Length = 483

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 31/220 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQ---GKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK- 242
           + +  ++  + +     +HI      K  + IRN    + I+G++NAGKSSL N L +  
Sbjct: 227 TDRRRISHRIAVLRRRLTHIESTRASKRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAG 286

Query: 243 ---DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + A+   +  TTR   T     +G +  ++DT G          E    T  E   A
Sbjct: 287 VLVENALFATLDPTTRRATT----SDGRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMA 342

Query: 300 DLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE-------EYD 340
           D++L + + +    +                NI  I +  K D  S  T           
Sbjct: 343 DVLLHVVDADDPDPLGQVDAVRGVLSGIGASNIPEILVLNKIDRLSDETILTLRSTFPGA 402

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +L+S+ TGEG+++L+  I++ L    +++   IP  +  L
Sbjct: 403 YLVSAHTGEGIDKLVEAIEAGLPIPSQRVDVVIPYARGDL 442


>gi|13470637|ref|NP_102206.1| GTP binding protein-like [Mesorhizobium loti MAFF303099]
 gi|14021379|dbj|BAB47992.1| GTP binding protein-like [Mesorhizobium loti MAFF303099]
          Length = 431

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 90/217 (41%), Gaps = 32/217 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDV 244
             +++   I+ LK+++ +      L    R       + I+G++NAGKS+LFN L   DV
Sbjct: 164 DRRQLQEKIIKLKHELETVRRTRDLHRAKRKKVPFPVVAIVGYTNAGKSTLFNRLTGADV 223

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +  D+   T D     + L  G  + +SDT G             + T  EV  ADL++
Sbjct: 224 -LAQDMLFATLDPTLRRVRLPHGTPIILSDTVGFISDLPTHLIAAFRATLEEVVEADLVI 282

Query: 304 LLKEINSKKEISFPKNIDFIF---------------IGTKSDLYSTYT------------ 336
            L++I+     +  ++++ I                +  K DL                 
Sbjct: 283 HLRDISDPDTAAQAEDVERILADLGVDAGDTKRVIEVWNKVDLLDEGNRSRLLADAVDGS 342

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           +     IS+ TGEG+E L   I++ ++ + + L  +I
Sbjct: 343 KGPPIAISAVTGEGIEALKAVIETRMAGELEDLTVTI 379


>gi|255693538|ref|ZP_05417213.1| GTP-binding protein Era [Bacteroides finegoldii DSM 17565]
 gi|260620676|gb|EEX43547.1| GTP-binding protein Era [Bacteroides finegoldii DSM 17565]
          Length = 293

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 71/163 (43%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NAL  + ++I T    TTR  +    + +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDEMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKN-----IDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++     K   F        +  + +  K DL   
Sbjct: 67  YKLQESMLNFSTSALTDADILLYVTDVVETPDKNNEFMAKVRQMTVPVLLLINKIDLTDQ 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                          +     IS+ +   ++ ++ +IK +L +
Sbjct: 127 EKLVKLVEDWKELLPQAEIIPISAASKFNVDYVMKRIKELLPD 169


>gi|281358827|ref|ZP_06245299.1| small GTP-binding protein [Victivallis vadensis ATCC BAA-548]
 gi|281314695|gb|EFA98736.1| small GTP-binding protein [Victivallis vadensis ATCC BAA-548]
          Length = 414

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 24/174 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
            +I + G +N+GKSS  N +A +DVAI + +PGTT DV+   ++L     V   DTAG+ 
Sbjct: 10  LQIAVAGRTNSGKSSFLNLIAGQDVAITSPVPGTTTDVVEKPMELRPLGPVLFLDTAGVD 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLK-----EINSKKEISFPKNIDFIF--IGTKSDL 331
           +   +  +  ++R+      AD++LL+       +  +  ++  ++       +  K D 
Sbjct: 70  DETALGGRR-VERSERAFNRADVLLLVTGAGVWGVPEENMLAAARDRKVSLIPVVNKIDE 128

Query: 332 YSTYTE---------EYDHLISSFTGEGLEE------LINKIKSILSNKFKKLP 370
                E          ++ L  S TG   E       L + + +     F + P
Sbjct: 129 QPPAPEFLAMLKEKCGFEPLCVSSTGGATERERVLPLLKDALLAACPEDFIQAP 182


>gi|15639530|ref|NP_218980.1| GTP-binding protein Era [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025769|ref|YP_001933541.1| GTP-binding protein Era [Treponema pallidum subsp. pallidum SS14]
 gi|13959351|sp|O83552|ERA_TREPA RecName: Full=GTPase Era
 gi|226741402|sp|B2S3D3|ERA_TREPS RecName: Full=GTPase Era
 gi|3322831|gb|AAC65525.1| GTP-binding protein (era) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018344|gb|ACD70962.1| GTP-binding protein [Treponema pallidum subsp. pallidum SS14]
          Length = 319

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 15/205 (7%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G   R+G  + I+G  ++GKS+  NA+    V+IV+ IP TTR+ +   +++E   +   
Sbjct: 5   GASPRSGVSL-IIGRPSSGKSTFLNAVCGYKVSIVSPIPQTTRNTVRGIVNIESDQIVFM 63

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP------KNIDFI 323
           DT G   +D              V++AD++L L +      ++E +        +    +
Sbjct: 64  DTPGYHRSDRKFNLRLQSLVHSNVKDADVLLYLVDATRQFGEEEAAICALLAPYQKTRVL 123

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEE--LINKIKSILSNKFKKLPFSI-PSHKRHL 380
               K D+    T   +H      G  L    L   + + L +      F+I   H+  L
Sbjct: 124 LAFNKVDVLHNSTSCDEHAFLHRQGSVLRAGSLGRALHAALPHLPADRVFTISALHQVGL 183

Query: 381 YHLSQTVRYL--EMASLNEKDCGLD 403
             L +T+R L  E A L  +DC  D
Sbjct: 184 DALMRTLRDLLPEAAPLYPQDCYTD 208


>gi|315108429|gb|EFT80405.1| GTP-binding protein Era [Propionibacterium acnes HL030PA2]
          Length = 342

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 34/231 (14%)

Query: 209 QGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
             ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E
Sbjct: 29  TARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDE 88

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEIS 315
              + + DT G+ +   ++ +      F      D+I +    N +          +   
Sbjct: 89  KSQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSEIAE 148

Query: 316 FPKNIDFIFIGTKSDLYS------------TYTEEYDH------LISSFTGEGLEELINK 357
            P+    I + TKSDL S                E           S+ +GE ++E+ + 
Sbjct: 149 LPRRPTLIALATKSDLVSKARMAEHLAAIDKLQREVGIEFVEVVPCSAVSGEQIDEVRDV 208

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLDII 405
           I S+L       P    + +     +++ +R   +  + E       ++I+
Sbjct: 209 IASLLPEGPAYYPDGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIV 259


>gi|256369100|ref|YP_003106608.1| GTP-binding protein Era [Brucella microti CCM 4915]
 gi|255999260|gb|ACU47659.1| GTP-binding protein Era [Brucella microti CCM 4915]
          Length = 311

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 81/203 (39%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++         L+ + DT G
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPALIVLVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTK 328
           I      +++  +   +   ++AD+IL++ +       N++  +   K+     + +  K
Sbjct: 77  IFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAEALLESMKDVRQKKVLVLNK 136

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D                    +   +IS+  G G ++L   +   + N     P    S
Sbjct: 137 VDRVDPPVLLSLAQKANELVPFDRTFMISALNGSGCKDLAKYLAESVPNGPWYYPEDQIS 196

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+E+
Sbjct: 197 DMPMRQLAAEITREKLYLRLHEE 219


>gi|118464862|ref|YP_882795.1| GTPase [Mycobacterium avium 104]
 gi|118166149|gb|ABK67046.1| GTPase [Mycobacterium avium 104]
          Length = 482

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 97/285 (34%), Gaps = 25/285 (8%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q    +  + G   S+  Q   +       +        + +      +E +  +  
Sbjct: 178 SLAQMEYMLPRLRGWGESMSRQAGGRAGGSGGGVGLRGPGETKIETDRRRIRERMAKLRR 237

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
              D+       +   +  +   I I+G++NAGKSSL NAL    V +V D    T +  
Sbjct: 238 EIKDMKQVRDTQRSRRLHSDVPSIAIVGYTNAGKSSLLNALTGAGV-LVQDALFATLEPT 296

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           T   +  +G    ++DT G          E  + T  EV +ADL++ + + +    ++  
Sbjct: 297 TRRAEWDDGRAFVLTDTVGFVRHLPTQLVEAFRSTLEEVVDADLLVHVVDGSDVNPLAQI 356

Query: 318 ----------------KNIDFIFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEEL 354
                           +    + +  K+D                   +S+ TG+G++ L
Sbjct: 357 DAVHQVISEVIADHHGEPPPELLVVNKTDAAGDVALAKLRHALPGAVFVSAATGDGIDGL 416

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             +I  +       +   IP H+  L         ++    N + 
Sbjct: 417 RRRIAELAVPAEAAVDVVIPYHRGDLVARLHADGRVQQEEHNAEG 461


>gi|62259927|gb|AAX77873.1| unknown protein [synthetic construct]
          Length = 332

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 21/164 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N + K  V+I +  P TTR  +T    L        DT GI  + 
Sbjct: 33  ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 92

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSD--- 330
              + K   K      ++ D+IL + E+    E+            I    +  K D   
Sbjct: 93  PKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKHSEIPIFLVVNKVDKKK 152

Query: 331 ------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSN 364
                    +  E+         S+  G  + EL ++I+ +L  
Sbjct: 153 SLEAAMFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLLPE 196


>gi|332289237|ref|YP_004420089.1| GTP-binding protein Era [Gallibacterium anatis UMN179]
 gi|330432133|gb|AEC17192.1| GTP-binding protein Era [Gallibacterium anatis UMN179]
          Length = 307

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 18  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIDTDGAYQAVYVDTPGLHIEE 77

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     + + DLI+ + +        E+   K        +    K D   
Sbjct: 78  KRAINRLMNRAASSAIGDVDLIIFVVDGTHWTDDDEMVLTKLRSAKAPVVLAINKIDNVK 137

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L   ++ +    IS+  G  + +L   ++  L       P    + +  
Sbjct: 138 NKDELLPFIQQLTEKFSFKEVVPISAQRGNNVHQLKAIVRQSLRKGVHHFPEEYVTDRSQ 197

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 198 RFMASEIIR 206


>gi|313764555|gb|EFS35919.1| GTP-binding protein Era [Propionibacterium acnes HL013PA1]
 gi|313792243|gb|EFS40344.1| GTP-binding protein Era [Propionibacterium acnes HL110PA1]
 gi|313801808|gb|EFS43042.1| GTP-binding protein Era [Propionibacterium acnes HL110PA2]
 gi|313816096|gb|EFS53810.1| GTP-binding protein Era [Propionibacterium acnes HL059PA1]
 gi|313827675|gb|EFS65389.1| GTP-binding protein Era [Propionibacterium acnes HL063PA2]
 gi|313838634|gb|EFS76348.1| GTP-binding protein Era [Propionibacterium acnes HL086PA1]
 gi|314915551|gb|EFS79382.1| GTP-binding protein Era [Propionibacterium acnes HL005PA4]
 gi|314918495|gb|EFS82326.1| GTP-binding protein Era [Propionibacterium acnes HL050PA1]
 gi|314919982|gb|EFS83813.1| GTP-binding protein Era [Propionibacterium acnes HL050PA3]
 gi|314931995|gb|EFS95826.1| GTP-binding protein Era [Propionibacterium acnes HL067PA1]
 gi|314955864|gb|EFT00264.1| GTP-binding protein Era [Propionibacterium acnes HL027PA1]
 gi|314958345|gb|EFT02448.1| GTP-binding protein Era [Propionibacterium acnes HL002PA1]
 gi|314968021|gb|EFT12120.1| GTP-binding protein Era [Propionibacterium acnes HL037PA1]
 gi|315078117|gb|EFT50168.1| GTP-binding protein Era [Propionibacterium acnes HL053PA2]
 gi|315098436|gb|EFT70412.1| GTP-binding protein Era [Propionibacterium acnes HL059PA2]
 gi|315101207|gb|EFT73183.1| GTP-binding protein Era [Propionibacterium acnes HL046PA1]
 gi|327450881|gb|EGE97535.1| GTP-binding protein Era [Propionibacterium acnes HL087PA3]
 gi|327453042|gb|EGE99696.1| GTP-binding protein Era [Propionibacterium acnes HL092PA1]
 gi|327453770|gb|EGF00425.1| GTP-binding protein Era [Propionibacterium acnes HL083PA2]
 gi|328754301|gb|EGF67917.1| GTP-binding protein Era [Propionibacterium acnes HL087PA1]
 gi|328754447|gb|EGF68063.1| GTP-binding protein Era [Propionibacterium acnes HL025PA2]
          Length = 342

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 34/231 (14%)

Query: 209 QGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
             ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E
Sbjct: 29  TARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDE 88

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEIS 315
              + + DT G+ +   ++ +      F      D+I +    N +          +   
Sbjct: 89  KSQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSEIAE 148

Query: 316 FPKNIDFIFIGTKSDLYS------------TYTEEYDH------LISSFTGEGLEELINK 357
            P+    I + TKSDL S                E           S+ +GE ++E+ + 
Sbjct: 149 LPRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDV 208

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLDII 405
           I S+L       P    + +     +++ +R   +  + E       ++I+
Sbjct: 209 IASLLPEGPAYYPDGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIV 259


>gi|298480162|ref|ZP_06998360.1| GTP-binding protein Era [Bacteroides sp. D22]
 gi|298273443|gb|EFI15006.1| GTP-binding protein Era [Bacteroides sp. D22]
          Length = 293

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 70/163 (42%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +    + +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNVLVGERISIATFKAQTTRHRIMGIYNTDEMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++       N   E      +  + +  K DL   
Sbjct: 67  YKLQESMLNFSTSALTDADILLYVTDVVETPDKNNEFMEKVRQMTVPVLLLINKIDLTDQ 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                          +     IS+ +   ++ ++ +IK +L N
Sbjct: 127 EKLVKLVEDWKELLPQAEIIPISATSKFNVDYVMKRIKELLPN 169


>gi|126434737|ref|YP_001070428.1| GTP-binding protein, HSR1-related [Mycobacterium sp. JLS]
 gi|126234537|gb|ABN97937.1| GTP-binding protein, HSR1-related protein [Mycobacterium sp. JLS]
          Length = 483

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 31/220 (14%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK----DVA 245
           +E ++ +     D+       + G        + I+G++NAGKSSL NAL       + A
Sbjct: 230 RERMSKLRREIKDMKKIRDTQRSGRRRTEVPSVAIVGYTNAGKSSLLNALTGAGVLVENA 289

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           +   +  TTR     + D +G    ++DT G          E  + T  EV +ADL++ +
Sbjct: 290 LFATLEPTTR---RGEFD-DGRPFVLTDTVGFVRHLPTQLVEAFRSTLEEVADADLLVHV 345

Query: 306 KEINSKKEISF----------------PKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
            + +    ++                  K    + +  K D     +  +          
Sbjct: 346 VDGSDANPLAQISAVREVINEVIAEQNAKPAPELLVVNKIDAADGLSLAHLRRALPEAVF 405

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           +S+ TG+GL+ L  ++  ++ +    +  +IP  +  L  
Sbjct: 406 VSARTGQGLDRLSARMSELVESTDVTVDVTIPYDRGDLVA 445


>gi|329894312|ref|ZP_08270182.1| GTP-binding protein Era [gamma proteobacterium IMCC3088]
 gi|328923108|gb|EGG30431.1| GTP-binding protein Era [gamma proteobacterium IMCC3088]
          Length = 300

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 72/197 (36%), Gaps = 22/197 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E I+    + I+G  N GKS+L N +  + ++I +  P TTR  L        + +   D
Sbjct: 3   ESIKKSAIVAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHTLLGIHTEGDFQLVFVD 62

Query: 274 TAGI-RETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFPKNI--DFIFI 325
           T GI  E    + +         + + D+I ++ +      + ++     K      + +
Sbjct: 63  TPGIHSEHKKALNEYMNHAATQAMADTDIICMIVDRTHWNADDERVFKHVKRHSAKLVLV 122

Query: 326 GTKSD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             K D              LY     +    +S+FT   ++ L+  +  +        P 
Sbjct: 123 VNKVDLLNDKGRLLPYLEELYQKSGADEIVPVSAFTPSDVQRLVQALVKLSPVGEAIFPE 182

Query: 372 SIPSHKRHLYHLSQTVR 388
              + +   +  S+ VR
Sbjct: 183 DQVTTRSSRFLASEIVR 199


>gi|254703996|ref|ZP_05165824.1| GTP-binding protein Era [Brucella suis bv. 3 str. 686]
 gi|261754649|ref|ZP_05998358.1| GTP-binding protein era [Brucella suis bv. 3 str. 686]
 gi|261744402|gb|EEY32328.1| GTP-binding protein era [Brucella suis bv. 3 str. 686]
          Length = 311

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++          + + DT G
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIVLVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTK 328
           I      +++  +   +   ++AD+IL++ +       N++  +   K+     + +  K
Sbjct: 77  IFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAEALLESMKDVRQKKVLVLNK 136

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D                    +   +IS+  G G ++L   +   + N     P    S
Sbjct: 137 VDRVDPPVLLSLAQKANELVPFDRTFMISALNGSGCKDLAKYLAESVPNGPWYYPEDQIS 196

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+E+
Sbjct: 197 DIPMRQLAAEITREKLYLRLHEE 219


>gi|257784594|ref|YP_003179811.1| GTP-binding protein Era [Atopobium parvulum DSM 20469]
 gi|257473101|gb|ACV51220.1| GTP-binding protein Era [Atopobium parvulum DSM 20469]
          Length = 312

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  + GKS+L NA   + VAI + +  TTR      ++ E   + I DT G
Sbjct: 18  RSGF-VALVGRPSVGKSTLLNACMGQKVAIASPVAQTTRRRFRAVVNGENSQLVIVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--KEISFPKNIDFI-------FIGT 327
           + +  D + KE  K    E+ +AD+I  L +      +   +  N            I T
Sbjct: 77  LHKPKDALGKELNKAALGELNDADVIAFLIDATKPVGRGDEWVANHVEQAHAAFKLLIIT 136

Query: 328 KSDLYS 333
           K+D+ +
Sbjct: 137 KADIAT 142


>gi|301154740|emb|CBW14203.1| membrane-associated, 16S rRNA-binding GTPase [Haemophilus
           parainfluenzae T3T1]
          Length = 304

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 73/190 (38%), Gaps = 24/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIR-E 279
           I I+G  N GKS+L N +  + ++I +    TTR  + + +  EG   +I  DT G+  E
Sbjct: 15  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-VGIKTEGIYQEIYVDTPGLHIE 73

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----------NIDFIFI 325
               + +   +     + + DLI+ + +    N+  E+   K                 I
Sbjct: 74  EKRAINRLMNRAASSAIGDVDLIIFVVDGTHWNADDEMVLNKLRNAKAPVVLAINKVDNI 133

Query: 326 GTKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
             K DL    T+        +   IS+  G  + +L   ++  L       P    + + 
Sbjct: 134 KNKDDLLPFITDLGSKFDFAHIVPISAQRGNNVHQLEKIVRQSLRKGVHHFPEDYVTDRS 193

Query: 379 HLYHLSQTVR 388
             +  S+ +R
Sbjct: 194 QRFMASEIIR 203


>gi|300744003|ref|ZP_07073023.1| GTP-binding protein [Rothia dentocariosa M567]
 gi|300380364|gb|EFJ76927.1| GTP-binding protein [Rothia dentocariosa M567]
          Length = 593

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/316 (19%), Positives = 117/316 (37%), Gaps = 32/316 (10%)

Query: 92  VNGILEELAKMPNLRLANPGEFSRRAFEN-GKIDLLEAESLADLISSETEMQR----RLS 146
           +  I+E       +  +      RRA E+  K+ +++  +L   I ++    R    ++ 
Sbjct: 209 LKDIVEATGADTVIVDSELAPSQRRALEDIVKVKVIDRTALILDIFAQHAKSREGKAQVE 268

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDF----SEEEDVQNFSSKEVLNDILFLKND 202
           +  +   +      W   L+       A  +        E       + +   +  LK +
Sbjct: 269 LAQLE-YMLPRLRGWGASLSRQAGGRAASGEGIGSRGPGETKIEMDRRRLRARMAKLKRE 327

Query: 203 ISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           I++     +   + R   ++    I G++NAGKSSL N L    V +   +  T    + 
Sbjct: 328 IAAMAPARETKRLSRKRNRVPSVAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVR 387

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------- 312
                +G    +SDT G   +      E  + T  EV +AD+IL + + +          
Sbjct: 388 KAQTPDGIGYTLSDTVGFVRSLPTQLVEAFRSTLEEVADADVILHVVDASHPDPEGQVRA 447

Query: 313 -----EISFPKNIDFIFIGTKSD------LYSTYTEEYDH-LISSFTGEGLEELINKIKS 360
                     + I  I +  K+D      L      E +H ++S+ TGEG+ EL  KI  
Sbjct: 448 VREVIADLDARRIPEIIVLNKADAADPFILERMRQREPNHVIVSARTGEGIGELKQKIAD 507

Query: 361 ILSNKFKKLPFSIPSH 376
            +     ++   IP +
Sbjct: 508 TIPRPSLEVKLLIPYN 523


>gi|254369164|ref|ZP_04985176.1| hypothetical protein FTAG_00104 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122114|gb|EDO66254.1| hypothetical protein FTAG_00104 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 297

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 21/164 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N + K  V+I +  P TTR  +T    L        DT GI  + 
Sbjct: 7   ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSD--- 330
              + K   K      ++ D+IL + E+    E+            I    +  K D   
Sbjct: 67  PKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKHSEIPIFLVVNKVDKKK 126

Query: 331 ------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSN 364
                    +  E+  +      S+  G  + EL ++I+ +L  
Sbjct: 127 SLEAAMFIESIKEKLSYYDVIYVSAKQGHNINELESRIEKLLPE 170


>gi|315650683|ref|ZP_07903739.1| GTP-binding protein [Eubacterium saburreum DSM 3986]
 gi|315487060|gb|EFU77386.1| GTP-binding protein [Eubacterium saburreum DSM 3986]
          Length = 415

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 108/263 (41%), Gaps = 24/263 (9%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           ++SE ++Q  L+    S   ++        L+ +   I       ++ ++      + ++
Sbjct: 117 VTSEGKIQVELAQLKFS---AARLVGLRSSLSRLGGGIGTRGPGEKKLEMDRRLINDRIS 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +      + SH    +        + + I+G++NAGKS+L N L   ++ +  D    T
Sbjct: 174 QLKSELKKVESHRELIRKSRDENFAFNVAIVGYTNAGKSTLLNKLTDANI-LAEDKLFAT 232

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D  T  L L+ G  + ++DT G          E  K T  E + A+L++ + + ++++ 
Sbjct: 233 LDPTTRKLKLDSGQEILVTDTVGFIRKLPHHLIEAFKSTLEEAKYANLLIHMVDASNEEA 292

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTE-------EYDHLISSFTGEGLEEL 354
            S               + D I +  K+DL     E       +    +S+ TGEG+E+L
Sbjct: 293 SSQMLVVYDTLRSLDVVDKDIITVFNKTDLTDKDMELPRDFHADKILRMSAKTGEGIEDL 352

Query: 355 INKIKSILSNKFKKLPFSIPSHK 377
              I++IL N+   L       +
Sbjct: 353 KKTIENILQNQRVYLEHVFSYKE 375


>gi|289425268|ref|ZP_06427045.1| GTP-binding protein Era [Propionibacterium acnes SK187]
 gi|289154246|gb|EFD02934.1| GTP-binding protein Era [Propionibacterium acnes SK187]
          Length = 340

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 34/231 (14%)

Query: 209 QGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
             ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E
Sbjct: 27  TARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDE 86

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEIS 315
              + + DT G+ +   ++ +      F      D+I +    N +          +   
Sbjct: 87  KSQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSEIAE 146

Query: 316 FPKNIDFIFIGTKSDLYS------------TYTEEYDH------LISSFTGEGLEELINK 357
            P+    I + TKSDL S                E           S+ +GE ++E+ + 
Sbjct: 147 LPRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDV 206

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLDII 405
           I S+L       P    + +     +++ +R   +  + E       ++I+
Sbjct: 207 IASLLPEGPAYYPDGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIV 257


>gi|255326352|ref|ZP_05367436.1| small GTP-binding protein [Rothia mucilaginosa ATCC 25296]
 gi|255296569|gb|EET75902.1| small GTP-binding protein [Rothia mucilaginosa ATCC 25296]
          Length = 570

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 85/212 (40%), Gaps = 22/212 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKK 242
               + +   +  LK +I++     +   + R   ++    I G++NAGKSSL N L   
Sbjct: 279 EMDRRRLRARMAKLKREIAAMAPARETKRLNRRRNRVPSVAIAGYTNAGKSSLLNRLTDA 338

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G    +SDT G   +      E  + T  EV +AD+I
Sbjct: 339 GVLVENALFATLDPTVRKAQTPDGIGYTLSDTVGFVRSLPTQLVEAFRSTLEEVADADVI 398

Query: 303 LLLKEINSKK------------EISFPKNIDFIFIGTKSD------LYSTYTEEYDH-LI 343
           L + + +                    ++I  I +  K+D      L      E +H ++
Sbjct: 399 LHVVDASHPDPEGQIRAVREVIAEVDARHIPEIIVLNKADAADPFVLERMRQREPEHVIV 458

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           S+ TGEG+EEL  KI   +     ++   IP 
Sbjct: 459 SARTGEGIEELKQKIADTIPRPSIEVKLLIPY 490


>gi|222616255|gb|EEE52387.1| hypothetical protein OsJ_34479 [Oryza sativa Japonica Group]
          Length = 568

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 84/217 (38%), Gaps = 22/217 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKK 242
               + +   I  L+ ++ S     KL    R    I    ++G++NAGKS+L N L   
Sbjct: 307 EVDKRILRTQISALRKELESVRKHRKLYRNRRQSVPIPVVSLVGYTNAGKSTLLNRLTGA 366

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           DV     +  T        L   G    ++DT G  +    +     + T  E+  + +I
Sbjct: 367 DVLAEDKLFATLDPTTRRVLMKNGTEFLLTDTVGFIQKLPTMLVAAFRATLEEISESSVI 426

Query: 303 LLLKEIN---SKKEISFPKN---------IDFIFIGTKSD-------LYSTYTEEYDHLI 343
           + L +I+   ++++I              I  + +  K D       +     ++    I
Sbjct: 427 VHLVDISHPLAQQQIDAVDKVLKELDIESIPKLVVWNKIDNTDDTLRVKEEAEKQGIICI 486

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           S+  G+GLEE  N I++ L +    +   +P  K  L
Sbjct: 487 SAINGDGLEEFCNAIQAKLKDSLVPIEAFVPYDKGEL 523


>gi|218677582|ref|ZP_03525479.1| GTP-binding protein Era [Rhizobium etli CIAT 894]
          Length = 301

 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 23/220 (10%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           + DI++  +Q   G    +G+ + ++G +NAGKS+L N L    V+IV+    TTR ++ 
Sbjct: 6   EEDIAAEAAQETNG-PTHSGF-VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVR 63

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKE 313
                +   +   DT GI +    +++  +   +   ++ADLI+LL +       +++  
Sbjct: 64  GIAIHDNAQIVFMDTPGIFKPRRRLDRAMVTSAWGGAKDADLIVLLIDSERGLRGDAEAI 123

Query: 314 ISFPKN--IDFIFIGTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKI 358
           +   K      I +  K D                    E   +IS+  G G +++++ +
Sbjct: 124 LEGLKEVRQPKILLLNKIDRVNREDLLALAAAANEKIAFERTFMISAENGSGCDDVMDYL 183

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            + L       P    S        ++  R      L+++
Sbjct: 184 AATLPEGPWYYPEDQISDLPMRQLAAEITREKLFLRLHQE 223


>gi|70734071|ref|YP_257711.1| GTP-binding protein HflX [Pseudomonas fluorescens Pf-5]
 gi|68348370|gb|AAY95976.1| GTP-binding protein HflX [Pseudomonas fluorescens Pf-5]
          Length = 433

 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 110/297 (37%), Gaps = 27/297 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFNA+   DV    D    T
Sbjct: 174 QIKARLEKVRSQREQARRGRKRADIPSVSLVGYTNAGKSTLFNAVTASDV-FAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L+L+    + ++DT G          E  + T  E  N+DL+L + + +  + 
Sbjct: 233 LDPTLRRLELDDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDAHEPER 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           ++              +++  + +  K DL      +             +S+  G+GL+
Sbjct: 293 MAQIEQVMVVLGEIGAQDLPILEVYNKLDLLEGVEPQIQRDPDGKPQRVWLSARDGQGLD 352

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            L   I  +L         ++   +R     +Q  +   +   +  D G+ ++A  L
Sbjct: 353 LLKQAIAELLGEDL--FVGTLRLPQRFARLRAQFFQLNAVQKEDHDDEGVSLLAVRL 407


>gi|314962902|gb|EFT07002.1| GTP-binding protein Era [Propionibacterium acnes HL082PA1]
          Length = 342

 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 34/231 (14%)

Query: 209 QGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
             ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E
Sbjct: 29  TARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDE 88

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEIS 315
              + + DT G+ +   ++ +      F      D+I +    N +          +   
Sbjct: 89  KSQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSEIAE 148

Query: 316 FPKNIDFIFIGTKSDLYS------------TYTEEYDH------LISSFTGEGLEELINK 357
            P+    I + TKSDL S                E           S+ +GE ++E+ + 
Sbjct: 149 LPRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDV 208

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLDII 405
           I S+L       P    + +     +++ +R   +  + E       ++I+
Sbjct: 209 IASLLPEGPAYYPDGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIV 259


>gi|332529448|ref|ZP_08405407.1| gtp-binding protein era [Hylemonella gracilis ATCC 19624]
 gi|332041094|gb|EGI77461.1| gtp-binding protein era [Hylemonella gracilis ATCC 19624]
          Length = 296

 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    +       +DT G +   
Sbjct: 2   IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGIRTVGPTQFVFADTPGFQTRH 61

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKEINSKKEIS------FPKNIDFIFIGTKSDLYST 334
                  + +T    V + DL+L + E  S  +          + +  + I  K D    
Sbjct: 62  GNALNRSLNKTVQGAVGDVDLVLFVVEAGSFNQADEQVLKLLAQGVPVLLIANKLDTIKH 121

Query: 335 YTE 337
             E
Sbjct: 122 RAE 124


>gi|207743440|ref|YP_002259832.1| gtp-binding protein enga (partial sequence n terminus) [Ralstonia
           solanacearum IPO1609]
 gi|206594837|emb|CAQ61764.1| probable gtp-binding protein enga (partial sequence n terminus)
           [Ralstonia solanacearum IPO1609]
          Length = 122

 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I ++G  N GKS+LFN L +   A+V D+PG TRD    +  +        DT G     
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGFEPVA 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307
            + +  E  K+T   V  AD+++ + +
Sbjct: 65  KEGIVAEMAKQTRQAVVEADVVIFIVD 91


>gi|68535678|ref|YP_250383.1| GTP-binding protein Era [Corynebacterium jeikeium K411]
 gi|68263277|emb|CAI36765.1| putative GTP-binding protein [Corynebacterium jeikeium K411]
          Length = 336

 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 85/237 (35%), Gaps = 24/237 (10%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             F     + +   +  +      + +  E  R+G+ +  +G  N GKS+L NAL  + +
Sbjct: 11  DPFDPGAGMPEGAGVAPEEMEVPEEYRAPEGFRSGF-VSFVGRPNTGKSTLTNALVGEKI 69

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           AI  D P TTR  +   +  E   + + DT G+     ++ +   +       + D+I +
Sbjct: 70  AITADQPETTRHPIRGIVHREDAQIILVDTPGLHRPRTLLGERLNEVVKETYSDVDVIAM 129

Query: 305 LKEINSK----------KEISFPKNIDFIFIGTKSD-------------LYSTYTEEYDH 341
               + K             S       I + TK D             L+         
Sbjct: 130 CVPADEKIGPGDRWIVDAVRSVAPKTPLIGVVTKLDKVSKDQVGAQLLALHELLDGADVV 189

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            +SS     L+ L++ ++  L    K  P    +       +++ +R   +  L+++
Sbjct: 190 PVSSTKQVQLDVLLDVLRDQLPEGPKFYPDDHVTDDDRDTRMAELIREAALEGLHDE 246


>gi|332184229|gb|AEE26483.1| GTP-binding protein Era [Francisella cf. novicida 3523]
          Length = 297

 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 21/164 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N + K  V+I +  P TTR  +T    +        DT GI  + 
Sbjct: 7   ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTVGDTQFIYVDTPGIHIKE 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSD--- 330
              + K   K     V++ D+IL + E+    E+            I    +  K D   
Sbjct: 67  PKAINKFMNKAATTMVKDVDVILFVVEMGKWTELEDNIVEKLKHSEIPIFLVVNKVDKKK 126

Query: 331 ------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSN 364
                    +  E+         S+  G  + EL ++I+ +L  
Sbjct: 127 SLEAAIFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLLPE 170


>gi|302142554|emb|CBI19757.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 99/264 (37%), Gaps = 24/264 (9%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           E  +Q  +++  M  +L  L   W       ++  +      ++ +V     +  +  + 
Sbjct: 258 EAALQANVALAQMEYQLPRLTKMWTH--LERQAGGKVKGMGEKQIEVDKRILRTQIGALK 315

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  H  Q +          + ++G++NAGKS+L N L   +V +  D    T D 
Sbjct: 316 KELESVRQHRKQYRNRRFSVPVPVVSLVGYTNAGKSTLLNRLTGSNV-LAEDRLFATLDP 374

Query: 258 LTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKE 313
            T  + +  G    ++DT G  +    +     + T  E+  + L++ + +I+   ++++
Sbjct: 375 TTRRVQMKNGREFLLTDTVGFIQKLPTMLVAAFRATLEEISESSLLVHVVDISHPLAEQQ 434

Query: 314 ISFPKN---------IDFIFIGTKSDLYST--------YTEEYDHLISSFTGEGLEELIN 356
           I              I  + +  K D  S            E    IS+  G+GL E  N
Sbjct: 435 IDAVDKVLSELDVLSIPRLMVWNKVDKASNPQKIKLEAEKREDVVCISALNGDGLNEFCN 494

Query: 357 KIKSILSNKFKKLPFSIPSHKRHL 380
            ++  L +    +   +P  K  L
Sbjct: 495 AVQEKLKDSMVWVEALVPFDKGEL 518


>gi|23501550|ref|NP_697677.1| GTP-binding protein Era [Brucella suis 1330]
 gi|161618633|ref|YP_001592520.1| GTP-binding protein Era [Brucella canis ATCC 23365]
 gi|260566757|ref|ZP_05837227.1| GTP-binding protein Era [Brucella suis bv. 4 str. 40]
 gi|38257341|sp|Q8G1P9|ERA_BRUSU RecName: Full=GTPase Era
 gi|23347461|gb|AAN29592.1| GTP-binding protein Era [Brucella suis 1330]
 gi|161335444|gb|ABX61749.1| GTP-binding protein Era [Brucella canis ATCC 23365]
 gi|260156275|gb|EEW91355.1| GTP-binding protein Era [Brucella suis bv. 4 str. 40]
          Length = 311

 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++          + + DT G
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIVLVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTK 328
           I      +++  +   +   ++AD+IL++ +       N++  +   K+     + +  K
Sbjct: 77  IFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAEALLESMKDVRQKKVLVLNK 136

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D                    +   +IS+  G G ++L   +   + N     P    S
Sbjct: 137 VDRVDPPVLLSLAQKANELVPFDRTFMISALNGSGCKDLAKYLAESVPNGPWYYPEDQIS 196

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+E+
Sbjct: 197 DIPMRQLAAEITREKLYLRLHEE 219


>gi|314923092|gb|EFS86923.1| GTP-binding protein Era [Propionibacterium acnes HL001PA1]
          Length = 342

 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 34/231 (14%)

Query: 209 QGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
             ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E
Sbjct: 29  TARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDE 88

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEIS 315
              + + DT G+ +   ++ +      F      D+I +    N +          +   
Sbjct: 89  KSQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAE 148

Query: 316 FPKNIDFIFIGTKSDLYSTYTEE------------------YDHLISSFTGEGLEELINK 357
            P+    + + TKSDL S                            S+ +GE ++E+ + 
Sbjct: 149 LPRRPTLVALATKSDLVSKARMAEHLATIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDV 208

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLDII 405
           I S+L       P    + +     +++ +R   +  + E       ++I+
Sbjct: 209 IASLLPEGPAYYPDGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIV 259


>gi|86749731|ref|YP_486227.1| GTP-binding protein Era [Rhodopseudomonas palustris HaA2]
 gi|86572759|gb|ABD07316.1| GTP-binding protein [Rhodopseudomonas palustris HaA2]
          Length = 307

 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 27/217 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +   G  + + DT G
Sbjct: 13  RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIESGSQIVLVDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           I      +++  ++  +    +AD + +L +  +  +                 + +  K
Sbjct: 72  IFAPKRRLDRAMVRTAWTGAHDADAVCVLLDARAGIDEQAETIFGNLENVGHPKVLVLNK 131

Query: 329 SDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL                   +   ++S+ +G+G+++L   + + +       P    S
Sbjct: 132 IDLVPREKLLALTQAANERLRFDETFMVSALSGDGVDDLRRGLAARVPVGPFHYPEDQMS 191

Query: 376 HK--RHLYH---LSQTVRYLEMASLNEKDCGLDIIAE 407
               RHL       +  R L      +     D+  E
Sbjct: 192 DAPLRHLAAEITREKIFRKLHQELPYQSTVETDVWTE 228


>gi|301344405|gb|ADK73963.1| HydF [Shewanella oneidensis]
          Length = 413

 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
           Y I ++G  N+GKSSL N LA + ++IV+DI GTT D +    +L+    V   DTAGI 
Sbjct: 22  YHIALVGRRNSGKSSLLNMLAGQQISIVSDIKGTTTDAVAKAYELQPLGPVTFYDTAGID 81

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFPK-----NIDFIFIGTKSDL 331
           +   +     +  T   +  +D+ LL+ +       +++         +  + +  K+D+
Sbjct: 82  DEGTLGAMR-VSATRRVLFRSDMALLVVDEQGLCPSDMALIDEIRQLQMPILMVFNKADI 140

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
            +   E+              S+ TG   ++L   +  +   ++K+ P 
Sbjct: 141 CTPKAEDIAFCQNQSLPFIVVSAATGLAGKQLKQLMVELAPAEYKQEPL 189


>gi|257065848|ref|YP_003152104.1| GTP-binding protein Era [Anaerococcus prevotii DSM 20548]
 gi|256797728|gb|ACV28383.1| GTP-binding protein Era [Anaerococcus prevotii DSM 20548]
          Length = 293

 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 91/201 (45%), Gaps = 21/201 (10%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +I++G+ + ++G +N GKS+L   +  + ++I+++ P TTRD + I  + E   +   DT
Sbjct: 1   MIKSGF-VSVVGRANVGKSTLMEKIIGEKISIISNKPQTTRDKIQIIYNDEESQIIFLDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIG-- 326
            GI+   + +++  +  +   ++ +D+I ++ + + +      + +   + I    I   
Sbjct: 60  PGIQTPRNKLQERLLTFSEESLKESDIITMVVDDSEEIGRIDGEILEMLEKIKLPKILLI 119

Query: 327 TKSDLYSTYTE------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            K+DL                  +    IS+  GE ++  I+ IK +L          + 
Sbjct: 120 NKTDLADREKIAHIRENFRACDFDRIIEISALEGENIDVFIDTIKEMLDFGPAYYDRDMI 179

Query: 375 SHKRHLYHLSQTVRYLEMASL 395
           + K   + + + +R   + +L
Sbjct: 180 TDKTERFIVGEIIREKALRNL 200


>gi|111023736|ref|YP_706708.1| GTP-binding protein [Rhodococcus jostii RHA1]
 gi|110823266|gb|ABG98550.1| GTP-binding protein [Rhodococcus jostii RHA1]
          Length = 484

 Score = 82.2 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 81/222 (36%), Gaps = 28/222 (12%)

Query: 188 SSKEVLNDILFLKNDIS--SHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
             + +   +  L+ +I         K    +R     I I+G++NAGKSSL NAL    V
Sbjct: 225 DRRRIRERMAKLRREIKGMKAARDTKRTRRLRSETPSIAIVGYTNAGKSSLLNALTGSGV 284

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V +    T D  T    L +G    ++DT G          E  + T  EV +ADL+L
Sbjct: 285 -LVQNALFATLDPTTRRAALDDGREYVLTDTVGFVRHLPTQLIEAFRSTLEEVTDADLLL 343

Query: 304 LLKEINSKKEISFPK----------------NIDFIFIGTKSDLYSTYT-------EEYD 340
            + + +        +                    + +  K D     T           
Sbjct: 344 HVVDGSDPLPTDQIRAVHEVITEVIRENDAAAPPELIVVNKIDAADPVTLTQLRGLLPGA 403

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
             +S+ TGEG+ EL   +  +L     ++   +P ++  L  
Sbjct: 404 SFVSARTGEGIAELRAHLSDVLIRPEIEVSVLLPYNRGDLMA 445


>gi|254797278|ref|YP_003082120.1| GTP-binding protein Era [Neorickettsia risticii str. Illinois]
 gi|254590519|gb|ACT69881.1| GTP-binding protein Era [Neorickettsia risticii str. Illinois]
          Length = 299

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 18/155 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G+SN GKS+L NAL    ++ VT    TTR  +          +   DT GI    
Sbjct: 16  VSLIGNSNVGKSTLLNALIGSKISAVTHKVQTTRTRIRGIYTKYDTQLVFVDTPGIFIPR 75

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFPKNIDFIFIGTKSDLYSTYT 336
             +E+  +K  +      D+  L+ +      +S K+I    +   + +  K DL     
Sbjct: 76  CQLERVIVKNAWRAFAGTDVFCLIIDPRRPVSDSTKDILRKADGKLVLVINKIDLVEKPI 135

Query: 337 E-------------EYDHLISSFTGEGLEELINKI 358
                         E   +IS+  G G+++L+N +
Sbjct: 136 LLEVAQELNSLSYFEKTFMISALKGNGVDDLMNYL 170


>gi|218462892|ref|ZP_03502983.1| GTP-binding protein Era [Rhizobium etli Kim 5]
 gi|218663007|ref|ZP_03518937.1| GTP-binding protein Era [Rhizobium etli IE4771]
          Length = 313

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 79/198 (39%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 24  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKSDLY- 332
             +++  +   +   ++ADLI+LL +       +++  +   K      I +  K D   
Sbjct: 84  RRLDRAMVTSAWGGAKDADLIMLLIDSERGLRGDAEAILEGLKEVRQPKILVLNKIDRVN 143

Query: 333 ------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                            E   +IS+  G G +++++ + + L       P    S     
Sbjct: 144 REDLLALAASANDKIAFERTFMISAENGSGCDDVMDYLAATLPEGPWYYPEDQISDLPMR 203

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+++
Sbjct: 204 QLAAEITREKLFLRLHQE 221


>gi|320333363|ref|YP_004170074.1| GTP-binding protein Era-like-protein [Deinococcus maricopensis DSM
           21211]
 gi|319754652|gb|ADV66409.1| GTP-binding protein Era-like-protein [Deinococcus maricopensis DSM
           21211]
          Length = 302

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 9/138 (6%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  N GKS+L N+L    +A  +  P TTR  +    + +   +   DT G
Sbjct: 9   RAGF-VAIVGKPNVGKSTLLNSLLGVKIAPTSPRPQTTRKHIRGIYNTDTEQIIFVDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTK 328
           + +  D + K         + + D I+ + ++    + ++    +         + +G K
Sbjct: 68  LHKPKDALGKYMNNEVHTALADVDAIIWVVDLRHPPTDEDQLVARQVRELRQPLLLVGNK 127

Query: 329 SDLYSTYTEEYDHLISSF 346
            D      E +    +  
Sbjct: 128 VDAAKYPDEAFKLYRALI 145


>gi|315925210|ref|ZP_07921424.1| GTP-binding protein Era [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621444|gb|EFV01411.1| GTP-binding protein Era [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 307

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 77/188 (40%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L NA+  + + I +  P TTR+ +          +   DT G+ +  
Sbjct: 16  IALIGRPNVGKSTLLNAILGEKMVITSARPQTTRNSIRCIHTDADCQMVFVDTPGVHKPK 75

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--EISFPKN------IDFIFIGTKS---- 329
             + +   K     + + D +L L E   K+  E ++ +          + +  K     
Sbjct: 76  TKLGEYMKKTIRDTLADVDAVLYLVEPTKKERPEDAYIRKLLARVQAPVVLVINKIDTVG 135

Query: 330 -----DLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                D+ + Y  E        +S+  GEG+ E++  + ++L    +  P  +   +   
Sbjct: 136 KPALLDVMARYRGEDRLRTIVPVSAKRGEGIGEVMAALMAVLPEGPQYFPGDMIIDQSER 195

Query: 381 YHLSQTVR 388
           + +++ +R
Sbjct: 196 FVVAEMIR 203


>gi|314981203|gb|EFT25297.1| GTP-binding protein Era [Propionibacterium acnes HL110PA3]
 gi|315091774|gb|EFT63750.1| GTP-binding protein Era [Propionibacterium acnes HL110PA4]
 gi|315103278|gb|EFT75254.1| GTP-binding protein Era [Propionibacterium acnes HL050PA2]
 gi|315105483|gb|EFT77459.1| GTP-binding protein Era [Propionibacterium acnes HL030PA1]
          Length = 342

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 34/231 (14%)

Query: 209 QGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
             ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E
Sbjct: 29  TARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDE 88

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEIS 315
              + + DT G+ +   ++ +      F      D+I +    N +          +   
Sbjct: 89  KSQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAE 148

Query: 316 FPKNIDFIFIGTKSDLYSTYTEE------------------YDHLISSFTGEGLEELINK 357
            P+    + + TKSDL S                            S+ +GE ++E+ + 
Sbjct: 149 LPRRPTLVALATKSDLVSKARMAEHLATIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDV 208

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLDII 405
           I S+L       P    + +     +++ +R   +  + E       ++I+
Sbjct: 209 IASLLPEGPAYYPDGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIV 259


>gi|254776057|ref|ZP_05217573.1| hypothetical protein MaviaA2_15495 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 475

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 96/285 (33%), Gaps = 25/285 (8%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q    +  + G   S+  Q   +       +        + +      +E +  +  
Sbjct: 171 SLAQMEYMLPRLRGWGESMSRQAGGRAGGSGGGVGLRGPGETKIETDRRRIRERMAKLRR 230

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
              D+       +   +  +   I I+G++NAGKSSL NAL    V +V D    T +  
Sbjct: 231 EIKDMKQVRDTQRSRRLHSDVPSIAIVGYTNAGKSSLLNALTGAGV-LVQDALFATLEPT 289

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           T   +  +G    ++DT G          E  + T  EV +ADL++ + + +    ++  
Sbjct: 290 TRRAEWDDGRAFVLTDTVGFVRHLPTQLVEAFRSTLEEVVDADLLVHVVDGSDVNPLAQI 349

Query: 318 KN----------------IDFIFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEEL 354
                                + +  K+D                   +S+ TG+G++ L
Sbjct: 350 DAVHQVISEVIADHHGDPPPELLVVNKTDAAGDVALAKLRHALPGAVFVSAATGDGIDGL 409

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             +I  +       +   IP H+  L         ++    N + 
Sbjct: 410 RRRIAELAVPAEAAVDVVIPYHRGDLVARLHADGRVQQEEHNAEG 454


>gi|167586634|ref|ZP_02379022.1| GTP-binding protein Era [Burkholderia ubonensis Bu]
          Length = 299

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 21/188 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T     E       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTTEDAQFIFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P  +  + I  K D  + 
Sbjct: 74  STALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPGVPTLLIANKLDRVND 133

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            T  Y  +               S+   E ++ L+  +K  L            + +   
Sbjct: 134 KTTLYPFMQKVSALREFTEIVPLSAKHVEDIQRLMETVKPYLPEGEPIYGEDDLTDRSSR 193

Query: 381 YHLSQTVR 388
           +  ++ +R
Sbjct: 194 FLAAEILR 201


>gi|303242030|ref|ZP_07328522.1| small GTP-binding protein [Acetivibrio cellulolyticus CD2]
 gi|302590448|gb|EFL60204.1| small GTP-binding protein [Acetivibrio cellulolyticus CD2]
          Length = 406

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 19/159 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I + G  N GKSSL NAL  + VA+V++I GTT D +   ++ L    V   DT G
Sbjct: 8   NRLHIALFGRRNVGKSSLINALTHQKVAVVSEIAGTTTDPVYKSMEVLPLGPVVFIDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK-----EINSKKEIS---FPKNIDFIFIGTK 328
           I +   +     +++T   +   D+ +++        + ++E+S     + I FI    K
Sbjct: 68  IDDEGMLGNLR-VEKTKEVLRKTDIGIIVTTGMKQWGDLEEELSKKFIERKIPFIVAVNK 126

Query: 329 SD------LYSTYTEE---YDHLISSFTGEGLEELINKI 358
            D      L ST  E        IS++TG G+E L  ++
Sbjct: 127 CDNLNDFELISTLKERVKVPVIKISAYTGNGVEALFKEL 165


>gi|56708234|ref|YP_170130.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670705|ref|YP_667262.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134302151|ref|YP_001122120.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|224457352|ref|ZP_03665825.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370721|ref|ZP_04986726.1| GTP-binding protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875055|ref|ZP_05247765.1| GTP-binding protein era [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604726|emb|CAG45797.1| GTP-binding protein [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110321038|emb|CAL09180.1| GTP-binding protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134049928|gb|ABO46999.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151568964|gb|EDN34618.1| GTP-binding protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254841054|gb|EET19490.1| GTP-binding protein era [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159460|gb|ADA78851.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 297

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 21/164 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N + K  V+I +  P TTR  +T    L        DT GI  + 
Sbjct: 7   ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSD--- 330
              + K   K      ++ D+IL + E+    E+            I    +  K D   
Sbjct: 67  PKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKHSEIPIFLVVNKVDKKK 126

Query: 331 ------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSN 364
                    +  E+         S+  G  + EL ++I+ +L  
Sbjct: 127 SLEAAMFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLLPE 170


>gi|300311261|ref|YP_003775353.1| GTP-binding ERA protein [Herbaspirillum seropedicae SmR1]
 gi|300074046|gb|ADJ63445.1| GTP-binding ERA protein [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 73/194 (37%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R GY I I+G  N GKS+L N L    V+I +    TTR  +T    +E       DT 
Sbjct: 19  YRCGY-IAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTP 77

Query: 276 GIRETDDIVEKEGIKRTFL-EVENADLILLLKEIN-----SKKEIS-FPKNIDFIFIGTK 328
           G +        + + RT    +  AD+IL + E        K+ +   P N+  I +  K
Sbjct: 78  GFQTRHSNALNKTLNRTVTNTLTAADVILFVIEAGTFGPADKQVLDLLPANVPCILVLNK 137

Query: 329 SD-------LYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +D       L     E   H         S+     L+ L  +++ +L            
Sbjct: 138 ADRNKDKTTLMPFAREVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLLPQNPPMFDEDDI 197

Query: 375 SHKRHLYHLSQTVR 388
           + +   +  S+ VR
Sbjct: 198 TDRSEKFLASEIVR 211


>gi|57242463|ref|ZP_00370401.1| GTP-binding protein Era [Campylobacter upsaliensis RM3195]
 gi|57016748|gb|EAL53531.1| GTP-binding protein Era [Campylobacter upsaliensis RM3195]
          Length = 291

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 63/124 (50%), Gaps = 6/124 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ I ++G +NAGKS+L N+L ++ +A+V+     TR  +   +  +   +   DT 
Sbjct: 1   MKSGF-ISLIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMQDDNQLIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNIDFIFIGTKSD 330
           G+ E+   + +  ++     +++ D+I+ +  I     + +K ++    I  + +  K D
Sbjct: 60  GLHESKATLNQLLVQSALKAMKDCDVIVFVASIFDEISDYEKFLTLKSQIPHLVVLNKVD 119

Query: 331 LYST 334
           L   
Sbjct: 120 LAKN 123


>gi|182438802|ref|YP_001826521.1| GTP-binding protein Era [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178467318|dbj|BAG21838.1| putative Era/ThdF-family GTP-binding protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 324

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 85/226 (37%), Gaps = 28/226 (12%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
            S  +Q +     R G+    +G  NAGKS+L NAL  + VAI ++ P TTR  +   + 
Sbjct: 11  ESAAAQAETTSPHRAGF-ACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVH 69

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEI 314
            +   + + DT G+ +   ++ +             D+I      + K         KE+
Sbjct: 70  RDDAQLILVDTPGLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKYIVKEL 129

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +  K    I I TK+DL  +       L  S            +   L  ++ ++     
Sbjct: 130 AGIKKTPKIAIITKTDLVESKALAEQLLAVS-----------ALAEELGFEWAEIVPVSA 178

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCG-------LDIIAENLRLAS 413
              + +  L+  +  L   S      G       + ++AE +R A+
Sbjct: 179 VGDKQVDLLADLIAPLLPVSPPLYPEGDLTDEPEMVMVAELIREAA 224


>gi|108799131|ref|YP_639328.1| GTP-binding protein, HSR1-related [Mycobacterium sp. MCS]
 gi|119868246|ref|YP_938198.1| GTP-binding protein, HSR1-related [Mycobacterium sp. KMS]
 gi|108769550|gb|ABG08272.1| GTP-binding protein, HSR1-related protein [Mycobacterium sp. MCS]
 gi|119694335|gb|ABL91408.1| GTP-binding protein, HSR1-related protein [Mycobacterium sp. KMS]
          Length = 483

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 31/220 (14%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK----DVA 245
           +E ++ +     D+       + G        + I+G++NAGKSSL NAL       + A
Sbjct: 230 RERMSKLRREIKDMKKIRDTQRSGRRRTEVPSVAIVGYTNAGKSSLLNALTGAGVLVENA 289

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           +   +  TTR     + D +G    ++DT G          E  + T  EV +ADL++ +
Sbjct: 290 LFATLEPTTR---RGEFD-DGRPFVLTDTVGFVRHLPTQLIEAFRSTLEEVADADLLVHV 345

Query: 306 KEINSKKEISF----------------PKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
            + +    ++                  K    + +  K D     +  +          
Sbjct: 346 VDGSDANPLAQISAVREVINEVIAEQNAKPAPELLVVNKIDAADGLSLAHLRRALPEAVF 405

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           +S+ TG+GL+ L  ++  ++ +    +  +IP  +  L  
Sbjct: 406 VSARTGQGLDRLSARMSELVESTDVTVDVTIPYDRGDLVA 445


>gi|194335605|ref|YP_002017399.1| GTP-binding protein Era [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308082|gb|ACF42782.1| GTP-binding protein Era [Pelodictyon phaeoclathratiforme BU-1]
          Length = 306

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 26/192 (13%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           +I+G  NAGKS+L N L    ++IVT  P TTR  +T     E   +   DT GI +   
Sbjct: 12  IIIGPPNAGKSTLLNELLDYKLSIVTPKPQTTRKKITGIYHNEKCQIIFLDTPGIMKPQQ 71

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEI-------------SFPKNIDFIFIGTKS 329
            + +  +      +++AD+++ L   + KK+                P     I +  K 
Sbjct: 72  KLHESMLGVIRDTLKDADVVIALLPFSGKKDFFDRPFAEELFGNWLKPAGKPVIAVLNKC 131

Query: 330 DLYSTYTEE-------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           DL S   +E                 +S+     L +LI  I+  L   +   P    S 
Sbjct: 132 DLVSAERQEEAEAFVRKSWNPAAVLSVSALKATNLPQLIETIQPFLPLDYPLYPEDTLST 191

Query: 377 KRHLYHLSQTVR 388
               + +S+ +R
Sbjct: 192 APERFFVSEIIR 203


>gi|283458469|ref|YP_003363095.1| GTPase [Rothia mucilaginosa DY-18]
 gi|283134510|dbj|BAI65275.1| GTPase [Rothia mucilaginosa DY-18]
          Length = 571

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 85/212 (40%), Gaps = 22/212 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKK 242
               + +   +  LK +I++     +   + R   ++    I G++NAGKSSL N L   
Sbjct: 280 EMDRRRLRARMAKLKREIAAMAPARETKRLNRRRNRVPSVAIAGYTNAGKSSLLNRLTDA 339

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G    +SDT G   +      E  + T  EV +AD+I
Sbjct: 340 GVLVENALFATLDPTVRKAQTPDGIGYTLSDTVGFVRSLPTQLVEAFRSTLEEVADADVI 399

Query: 303 LLLKEINSKK------------EISFPKNIDFIFIGTKSD------LYSTYTEEYDH-LI 343
           L + + +                    ++I  I +  K+D      L      E +H ++
Sbjct: 400 LHVVDASHPDPEGQIRAVREVIAEVDARHIPEIIVLNKADAADPFVLERMRQREPEHVIV 459

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           S+ TGEG+EEL  KI   +     ++   IP 
Sbjct: 460 SARTGEGIEELKQKIADTIPRPSIEVKLLIPY 491


>gi|190891074|ref|YP_001977616.1| GTP-binding protein [Rhizobium etli CIAT 652]
 gi|190696353|gb|ACE90438.1| GTP-binding protein [Rhizobium etli CIAT 652]
 gi|327191323|gb|EGE58356.1| GTP-binding protein [Rhizobium etli CNPAF512]
          Length = 313

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 79/198 (39%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 24  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKSDLY- 332
             +++  +   +   ++ADLI+LL +       +++  +   K      I +  K D   
Sbjct: 84  RRLDRAMVTSAWGGAKDADLIMLLIDSERGLRGDAEAILEGLKEVRQPKILVLNKIDRVN 143

Query: 333 ------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                            E   +IS+  G G +++++ + + L       P    S     
Sbjct: 144 REDLLALAASANEKIAFERTFMISAENGSGCDDVMDYLAATLPEGPWYYPEDQISDLPMR 203

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+++
Sbjct: 204 QLAAEITREKLFLRLHQE 221


>gi|257453601|ref|ZP_05618891.1| GTP-binding protein Era [Enhydrobacter aerosaccus SK60]
 gi|257449059|gb|EEV24012.1| GTP-binding protein Era [Enhydrobacter aerosaccus SK60]
          Length = 349

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 24/210 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + ++I +  P TTR  +   L  E       DT GI   +
Sbjct: 52  VAIVGRPNVGKSTLMNHVLGQKLSITSRKPQTTRHRIMGILTNEQLQAIFVDTPGIHSRE 111

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD--- 330
              + +   K   L + + D +L + +        E+ F K     +  I +  KSD   
Sbjct: 112 VRAINERMNKAATLALADVDAVLFVIDSLKWVEDDELVFAKVQNLGVPVIAVINKSDTIK 171

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L+ T        +S+     L+EL+  I   L            + +  
Sbjct: 172 DEAQLFALLQKLHDTQVFSDIVPVSALRAHNLDELVRVIGKHLPIAAPIYDAEQVTDRSE 231

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            +  S+ +R   M +  + +   D+ +  +
Sbjct: 232 RFLASEIIREKVMRASGD-EIPYDLTVQID 260


>gi|268593249|ref|ZP_06127470.1| GTP-binding protein Era [Providencia rettgeri DSM 1131]
 gi|291311144|gb|EFE51597.1| GTP-binding protein Era [Providencia rettgeri DSM 1131]
          Length = 302

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +      + Y +   DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEDNYQIIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E     +  E+   K        I    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTNWTADDEMVLTKLSSLRCPVILAINKIDNVT 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T    H               IS+  G G++ +   +K  +       P    + +  
Sbjct: 131 DKTILLPHISMISQKMNFLDVVPISAEKGTGVDTIAKIVKQHIPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|310642491|ref|YP_003947249.1| gtpase with domain [Paenibacillus polymyxa SC2]
 gi|309247441|gb|ADO57008.1| Predicted GTPase with uncharacterized domain [Paenibacillus
           polymyxa SC2]
          Length = 417

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 20/170 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   IV+LG  NAGKSS+ N L  +  A+V+ I GTT D +   ++ L    + + DTAG
Sbjct: 10  NRPHIVLLGRRNAGKSSILNTLTGQPAAVVSPIGGTTTDPVFKPMELLPAGPIVLVDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTK 328
           + +  +I E     +T   + + DL LL+ +             E    K I  I +  K
Sbjct: 70  LDDEGEIGELR-RNKTLEILNSTDLALLVIDATVGVGPFEHELLEKLRTKKIPVIGVLNK 128

Query: 329 SD-------LYSTYTEEYD---HLISSFTGEGLEELINKIKSILSNKFKK 368
            D       + +T   E +      S+    G  EL   I + L     +
Sbjct: 129 IDTLAESDPMAATLGNELNLTLIPFSAAMLRGDTELKKAITNTLPQNEDR 178


>gi|237712744|ref|ZP_04543225.1| GTP-binding protein Era [Bacteroides sp. D1]
 gi|262408119|ref|ZP_06084666.1| GTP-binding protein Era [Bacteroides sp. 2_1_22]
 gi|293369491|ref|ZP_06616070.1| GTP-binding protein Era [Bacteroides ovatus SD CMC 3f]
 gi|294644224|ref|ZP_06721994.1| GTP-binding protein Era [Bacteroides ovatus SD CC 2a]
 gi|294808598|ref|ZP_06767338.1| GTP-binding protein Era [Bacteroides xylanisolvens SD CC 1b]
 gi|229447221|gb|EEO53012.1| GTP-binding protein Era [Bacteroides sp. D1]
 gi|262353671|gb|EEZ02764.1| GTP-binding protein Era [Bacteroides sp. 2_1_22]
 gi|292635376|gb|EFF53889.1| GTP-binding protein Era [Bacteroides ovatus SD CMC 3f]
 gi|292640434|gb|EFF58682.1| GTP-binding protein Era [Bacteroides ovatus SD CC 2a]
 gi|294444197|gb|EFG12924.1| GTP-binding protein Era [Bacteroides xylanisolvens SD CC 1b]
 gi|295088053|emb|CBK69576.1| GTP-binding protein Era [Bacteroides xylanisolvens XB1A]
          Length = 293

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 70/163 (42%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +    + +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNVLVGERISIATFKAQTTRHRIMGIYNTDEMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++       N   E      +  + +  K DL   
Sbjct: 67  YKLQESMLNFSTSALTDADILLYVTDVVETPDKNNEFMEKVRQMTVPVLLLINKIDLTDQ 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                          +     IS+ +   ++ ++ +IK +L +
Sbjct: 127 EKLVKLVEDWKELLPQAEIIPISATSKFNVDYVMKRIKELLPD 169


>gi|242309064|ref|ZP_04808219.1| GTP-binding protein Era [Helicobacter pullorum MIT 98-5489]
 gi|239524488|gb|EEQ64354.1| GTP-binding protein Era [Helicobacter pullorum MIT 98-5489]
          Length = 294

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 5/120 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG  NAGKS+  N L  + +A+++     TR  + + + +E   +   DT GI + +
Sbjct: 8   VAVLGRPNAGKSTFLNTLLGERLALISHKANATRKRMNLVVMVEETQIVFVDTPGIHKQE 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSDLYSTYT 336
            ++ +  +K     +++ D +L L   + K +     +   K      + TK D  S   
Sbjct: 68  KLLNQYMLKEAMKAMQDCDFLLFLAPASDKIDFYIDFLESAKGKPHFLLLTKIDCVSKEK 127


>gi|222618017|gb|EEE54149.1| hypothetical protein OsJ_00948 [Oryza sativa Japonica Group]
          Length = 725

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 17/158 (10%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           +   G+  +   ++ I+G  N GKS+L N L ++   +V    G TRD +      +   
Sbjct: 287 EAHEGDESKLPLQLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTRDSIRTQFQFDNRT 346

Query: 269 VKISDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFP---- 317
           V + DTAG  E    +       + ++   +  A ++ L+ +      SK  ++ P    
Sbjct: 347 VYLVDTAGWMERSGKEKGPASLSVVQSRKNLMRAHIVALVLDGEKIAKSKSSMNHPEVLI 406

Query: 318 ------KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
                 +    + I  K DL       +D +I +   E
Sbjct: 407 ARQAIEEGRGLVVIVNKMDLLRENRPLFDKVIDAVPKE 444



 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 27/170 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPG--TTRDVLTIDLDLEGYLVKISDTAGIR- 278
           ++++G  N GKS+LFN   ++  A+V + PG   TRD+      L     ++ D+AG+  
Sbjct: 96  VILVGRPNVGKSALFNRFIRRREALVYNTPGDHVTRDIREGVAKLGDLRFRVLDSAGLET 155

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFIFIGT 327
             T   +       T   +  +   + L ++    +                I  I    
Sbjct: 156 AATSGSILARTADMTGNVLARSQFAIFLIDVRDGLQPLDLEVGQWLRRHASGIHTIVAMN 215

Query: 328 KSD-------LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSN 364
           KS+       L +   E +         IS+ TG G+ EL   ++ +  +
Sbjct: 216 KSESLDEHGVLTAAAGEAHRLGFGDPVAISAETGLGMAELYETLRPLFED 265


>gi|206896503|ref|YP_002247406.1| GTP-binding protein HflX [Coprothermobacter proteolyticus DSM 5265]
 gi|206739120|gb|ACI18198.1| GTP-binding protein HflX [Coprothermobacter proteolyticus DSM 5265]
          Length = 350

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 20/183 (10%)

Query: 200 KNDISSHISQGKLGE------IIRNGYKIVILGHSNAGKSSLFNALAKKDV-AIVTDIPG 252
              +   + + +          +RN  ++ I+G++NAGKS+L NA +K    +   D   
Sbjct: 159 IRKLEKELKEAEARRVTTSKQRVRNTMQVSIVGYTNAGKSTLLNAFSKTSKPSYADDKVF 218

Query: 253 TTRD-VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D      L+LEG  V + DT G          +  K T   +  +DLIL + +++S 
Sbjct: 219 ATLDTRHRRFLNLEGKPVILVDTVGFVNFMPEKVLDAFKSTLEVIRYSDLILHVIDLSSP 278

Query: 312 KEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
                 +            +   I +  K DLY     +    +S+  G  L+EL N + 
Sbjct: 279 IMDEQERTVMRILEELGAGDRPVIKVYNKLDLYKGPVLQDGISVSALKGTNLDELKNAVV 338

Query: 360 SIL 362
           S L
Sbjct: 339 SAL 341


>gi|160882377|ref|ZP_02063380.1| hypothetical protein BACOVA_00326 [Bacteroides ovatus ATCC 8483]
 gi|237719051|ref|ZP_04549532.1| GTP-binding protein Era [Bacteroides sp. 2_2_4]
 gi|260172014|ref|ZP_05758426.1| GTP-binding protein Era [Bacteroides sp. D2]
 gi|299148135|ref|ZP_07041197.1| GTP-binding protein Era [Bacteroides sp. 3_1_23]
 gi|315920327|ref|ZP_07916567.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156112190|gb|EDO13935.1| hypothetical protein BACOVA_00326 [Bacteroides ovatus ATCC 8483]
 gi|229451430|gb|EEO57221.1| GTP-binding protein Era [Bacteroides sp. 2_2_4]
 gi|298512896|gb|EFI36783.1| GTP-binding protein Era [Bacteroides sp. 3_1_23]
 gi|313694202|gb|EFS31037.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 293

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 70/163 (42%), Gaps = 20/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +    + +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNVLVGERISIATFKAQTTRHRIMGIYNTDEMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++       N   E      +  + +  K DL   
Sbjct: 67  YKLQESMLNFSTSALTDADILLYVTDVVETPDKNNEFMEKVRQMTVPVLLLINKIDLTDQ 126

Query: 335 -------------YTEEYDHLISSFTGEGLEELINKIKSILSN 364
                          +     IS+ +   ++ ++ +IK +L +
Sbjct: 127 EKLVKLVEEWKELLPQAEIIPISATSKFNVDYVMKRIKELLPD 169


>gi|317485139|ref|ZP_07944021.1| small GTP-binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316923674|gb|EFV44878.1| small GTP-binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 432

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 17/158 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  N GKSSL NALA + V+IV++ PGTT D +   L+      V   DTAG+ 
Sbjct: 10  LHIGLFGRRNVGKSSLLNALAAQSVSIVSNTPGTTTDPVEKTLEFAPLGPVVFLDTAGLD 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE-----------INSKKEISFP----KNIDFI 323
           +  ++   +  +RT   +   D+ L++             ++  +E + P     N    
Sbjct: 70  DEGELG-TQRTERTLAVLPRTDMALVVTAENVWGHYEETIVSRLREQAIPFLVVMNKTES 128

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            + +K  L            S+ TGEGLE +  ++  +
Sbjct: 129 SVASKDRLPDAMRGLPMVCASAKTGEGLETIRRELVRL 166


>gi|319792226|ref|YP_004153866.1| GTP-binding protein era [Variovorax paradoxus EPS]
 gi|315594689|gb|ADU35755.1| GTP-binding protein Era [Variovorax paradoxus EPS]
          Length = 322

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    L        DT G +   
Sbjct: 30  IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGMRTLGATQFVFVDTPGFQTLH 89

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSD 330
                + + +T    V + DLIL + E       + +      K I  + +  K D
Sbjct: 90  ANALNKSLNKTVQGAVGDVDLILFVVEAGSFTPADERVLKLLGKGIPTVLLANKLD 145


>gi|302756013|ref|XP_002961430.1| hypothetical protein SELMODRAFT_77541 [Selaginella moellendorffii]
 gi|300170089|gb|EFJ36690.1| hypothetical protein SELMODRAFT_77541 [Selaginella moellendorffii]
          Length = 462

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 110/295 (37%), Gaps = 29/295 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ +  +  +L  L   W          ++      ++ +V     +  + +
Sbjct: 157 AATREAALQVVLAQLEYQLPRLTKLWTHLERQAGGMVKGM--GEKQIEVDKRILRTKIAE 214

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +      +  H  Q +          I ++G++NAGKS+L N L+   V +  D    T 
Sbjct: 215 LRKNLESVRDHRQQYRNRRASVPIPVISLVGYTNAGKSTLLNKLSNAGV-LAEDKLFATL 273

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------- 307
           D +T  + L  G     +DT G  +          + T  E+ ++ LIL + +       
Sbjct: 274 DPITRRVQLPNGKECLFTDTVGFIQKLPTQLVAAFRATLEEISDSSLILHVVDRSHPMAP 333

Query: 308 -----INSKKEISFPKNIDFIFIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELI 355
                ++        ++I  + +  K D       L +   ++    +S+ TGEG++E  
Sbjct: 334 EQTKAVDEVLAELDVQHIPRLSVWNKIDKAEDPDALRAEAKQQGAICVSALTGEGIQEFF 393

Query: 356 NKIKSILSNKFKKLPFSIPSHK------RHLYHLSQTVRYLEMASLNEKDCGLDI 404
           + +++ L +   ++   +P  K       H   + +   Y +  +L      L +
Sbjct: 394 DAVETKLKDLLVRVEAIVPYSKGDLVDMIHRRGVVEHEEYTDSGTLVRAHVPLAL 448


>gi|260575069|ref|ZP_05843070.1| GTP-binding proten HflX [Rhodobacter sp. SW2]
 gi|259022691|gb|EEW25986.1| GTP-binding proten HflX [Rhodobacter sp. SW2]
          Length = 412

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 91/253 (35%), Gaps = 35/253 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + ++ +K  +   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 155 EADRRAIDDQVIRIKRQLEKVVKTRELHRAARRRVPFPLVALVGYTNAGKSTLFNRMTGA 214

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V     +  T    +   +   G  + ISDT G             + T  EV  ADLI
Sbjct: 215 EVLAKDMLFATLDPTMRGLVLPSGRKIIISDTVGFISDLPTQLVAAFRATLEEVLEADLI 274

Query: 303 LLLKEINSKKEISFPKN-------------IDFIFIGTKSDLYSTYTEEYDHLI------ 343
           L +++I+  +      +                I I  K DL      +           
Sbjct: 275 LHVRDISHPESAEQAADVAKILAALGVKAATPQIEIWNKLDLVQGAMRDGLVQQAQGRDG 334

Query: 344 ----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK--RHLYHLSQTVRYLEMASLNE 397
               S+ TGEGL EL+  I          L  ++P  +  RH +  ++ V   E  +   
Sbjct: 335 VMALSALTGEGLPELLEAISRAFDEAKSDLRLTLPFSEGRRHAWLHAEGVVLAETQTE-- 392

Query: 398 KDCGLDIIAENLR 410
                D    +LR
Sbjct: 393 -----DGWQIDLR 400


>gi|212710662|ref|ZP_03318790.1| hypothetical protein PROVALCAL_01728 [Providencia alcalifaciens DSM
           30120]
 gi|212686743|gb|EEB46271.1| hypothetical protein PROVALCAL_01728 [Providencia alcalifaciens DSM
           30120]
          Length = 302

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +      + Y +   DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEDNYQIIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTHWTPDDEMVLNKLSSLRCPVILAINKIDNVV 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T    H               IS+  G G++ +   +K  +       P    + +  
Sbjct: 131 DKTSLLPHIGMISQKMNFLDVVPISAEKGTGVDTIAKIVKQHIPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|314966861|gb|EFT10960.1| GTP-binding protein Era [Propionibacterium acnes HL082PA2]
 gi|315093218|gb|EFT65194.1| GTP-binding protein Era [Propionibacterium acnes HL060PA1]
 gi|327327686|gb|EGE69462.1| GTP-binding protein Era [Propionibacterium acnes HL103PA1]
          Length = 342

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 34/231 (14%)

Query: 209 QGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
             ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E
Sbjct: 29  TARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDE 88

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEIS 315
              + + DT G+ +   ++ +      F      D+I +    N +          +   
Sbjct: 89  KSQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAE 148

Query: 316 FPKNIDFIFIGTKSDLYSTYTEE------------------YDHLISSFTGEGLEELINK 357
            P+    + + TKSDL S                            S+ +GE ++E+ + 
Sbjct: 149 LPRRPTLVALATKSDLVSKARMAEHLATIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDV 208

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLDII 405
           I S+L       P    + +     +++ +R   +  + E       ++I+
Sbjct: 209 IASLLPEGPAYYPDGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIV 259


>gi|312140286|ref|YP_004007622.1| gtpase [Rhodococcus equi 103S]
 gi|325677056|ref|ZP_08156726.1| GTP-binding protein Era [Rhodococcus equi ATCC 33707]
 gi|311889625|emb|CBH48942.1| putative GTPase [Rhodococcus equi 103S]
 gi|325552127|gb|EGD21819.1| GTP-binding protein Era [Rhodococcus equi ATCC 33707]
          Length = 305

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 82/220 (37%), Gaps = 26/220 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI +  P TTR  +   +  +   + + DT G
Sbjct: 7   RSGF-VCFVGRPNTGKSTLTNALVGEKIAITSSRPQTTRHTIRGIVHRDFAQLILVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIG 326
           +     ++ +             D+I L    + K          +          + I 
Sbjct: 66  LHRPRTLLGQRLNDLVRDTYSEVDVICLCIPADEKIGPGDRWILEQVRQMAPKTKLVGIV 125

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D  S                 E     +S+ +GE +E L+  +  ++       P  
Sbjct: 126 TKIDKVSKDGVAAQLMALSKLLGPEAEVIPVSAVSGEQVELLVKVLAGLMEPGPAFYPDG 185

Query: 373 IPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENLRL 411
             + +     +++ +R   +  L +E    L ++ E +R 
Sbjct: 186 ELTDEPEETLMAELIREAALEGLGDELPHSLAVVIEEVRE 225


>gi|50842423|ref|YP_055650.1| GTP-binding protein Era [Propionibacterium acnes KPA171202]
 gi|282854117|ref|ZP_06263454.1| GTP-binding protein Era [Propionibacterium acnes J139]
 gi|50840025|gb|AAT82692.1| GTP-binding protein Era homolog [Propionibacterium acnes KPA171202]
 gi|282583570|gb|EFB88950.1| GTP-binding protein Era [Propionibacterium acnes J139]
          Length = 340

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 34/231 (14%)

Query: 209 QGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
             ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E
Sbjct: 27  TARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDE 86

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEIS 315
              + + DT G+ +   ++ +      F      D+I +    N +          +   
Sbjct: 87  KSQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAE 146

Query: 316 FPKNIDFIFIGTKSDLYSTYTEE------------------YDHLISSFTGEGLEELINK 357
            P+    + + TKSDL S                            S+ +GE ++E+ + 
Sbjct: 147 LPRRPTLVALATKSDLVSKARMAEHLATIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDV 206

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLDII 405
           I S+L       P    + +     +++ +R   +  + E       ++I+
Sbjct: 207 IASLLPEGPAYYPDGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIV 257


>gi|160900692|ref|YP_001566274.1| GTP-binding protein Era [Delftia acidovorans SPH-1]
 gi|160366276|gb|ABX37889.1| GTP-binding protein Era [Delftia acidovorans SPH-1]
          Length = 344

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 7/141 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T             DT G +   
Sbjct: 54  IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRSRAATQFIFVDTPGFQTKH 113

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYST 334
                + + +T +  + + DLIL + E       ++K    F   I  + I  K D    
Sbjct: 114 STALNKSLNKTVMGAIGDVDLILFVVEAGQFTLADAKVLSLFKPGIPTLLIANKLDTVGR 173

Query: 335 YTEEYDHLISSFTGEGLEELI 355
             E    L S        E +
Sbjct: 174 RAEIAPWLKSMQERHPFAEFV 194


>gi|86131593|ref|ZP_01050191.1| GTP-binding protein Era [Dokdonia donghaensis MED134]
 gi|85818038|gb|EAQ39206.1| GTP-binding protein Era [Dokdonia donghaensis MED134]
          Length = 294

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +  
Sbjct: 8   VNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQMILSDTPGIIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPK----NIDFIFIGTKSDL--- 331
             ++   +       E+AD++L + E+  K+   E  F K     I  + +  K D    
Sbjct: 68  YELQASMMDFVKSAFEDADVLLYIVELGEKELKDEAFFNKIRGAKIPVLLLINKIDKGNE 127

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                                IS+    G+ ++ N+I  +L       P    + K   +
Sbjct: 128 EMLGEALKLWSEKVPNAEVFAISALENFGVPQVFNRIIELLPESPAFYPKDQLTDKPERF 187

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 188 FVNEIIR 194


>gi|311898744|dbj|BAJ31152.1| putative GTP-binding protein [Kitasatospora setae KM-6054]
          Length = 499

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 100/264 (37%), Gaps = 24/264 (9%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q +  +  + G   SL  Q     +       A     E +   +   + +   +  
Sbjct: 196 SLAQMQYMLPRLRGWGQSLSRQMGGGGSGTSGGGMATRGPGETKIETD--RRRIREKMAK 253

Query: 199 LKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           L+ +I+        K  E  RN    + I G++NAGKSSL N L    V +   +  T  
Sbjct: 254 LRKEIAEMKKGRDTKRQERRRNHVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLD 313

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +       G L  ++DT G          E  + T  EV +ADLIL + + +  +  +
Sbjct: 314 PTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDADLILHVVDGSHPEPET 373

Query: 316 ------------FPKNIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGEGLEELIN 356
                         +N+  I +  K+D             E +  ++S+ +G+G+EEL+ 
Sbjct: 374 QLAAVREVIVSVDAQNVPEIVVINKADAADPLVLQRLLRREPHAIVVSARSGQGIEELLA 433

Query: 357 KIKSILSNKFKKLPFSIPSHKRHL 380
            I   L +   ++   +P  +  L
Sbjct: 434 LIDRELPHPAVEVTVLVPYTRGDL 457


>gi|269794669|ref|YP_003314124.1| GTP-binding protein Era [Sanguibacter keddieii DSM 10542]
 gi|269096854|gb|ACZ21290.1| GTP-binding protein Era [Sanguibacter keddieii DSM 10542]
          Length = 314

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 14/138 (10%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
               G + R+G+    +G  NAGKS+L NAL  + VAI +D P TTR  +   ++     
Sbjct: 7   DAPEGAVHRSGF-ACFVGRPNAGKSTLTNALVGQKVAITSDRPQTTRHTIRGIVNRPDAQ 65

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISF 316
           + + DT G+     ++ +         +   D+I      + K             E++ 
Sbjct: 66  LILVDTPGLHRPRTLLGERLNDLVRDTLSEVDVIAFCLPADQKVGPGDRYIANQLAELNR 125

Query: 317 -PKNIDFIFIGTKSDLYS 333
             +    I + TK+DL +
Sbjct: 126 GRRGTPVIAVVTKADLVT 143


>gi|251791906|ref|YP_003006626.1| GTP-binding protein Era [Aggregatibacter aphrophilus NJ8700]
 gi|247533293|gb|ACS96539.1| GTP-binding protein Era [Aggregatibacter aphrophilus NJ8700]
          Length = 302

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 13  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEK 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----------NIDFIFIG 326
              + +   +     + + DL++ + +    N   E+   K                 I 
Sbjct: 73  KRALNRLMNRAASSAITDVDLVIFVVDGTHWNDDDEMVLNKLRKTKAPVVLAINKIDNIK 132

Query: 327 TKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL    TE            IS+  G  L+ +   ++  L       P    + +  
Sbjct: 133 NKDDLLPFITEITQKFNFADIVPISAEKGNNLDAIEKIVRKSLRPGVHHFPEDYVTDRSQ 192

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 193 RFMASEIIR 201


>gi|78485080|ref|YP_391005.1| GTP-binding protein Era [Thiomicrospira crunogena XCL-2]
 gi|78363366|gb|ABB41331.1| GTP-binding protein Era [Thiomicrospira crunogena XCL-2]
          Length = 314

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + ++G  N GKS++ N L  + ++I +  P TTR  +      E + +   DT G+    
Sbjct: 22  VAVIGRPNVGKSTIMNGLLGQKLSITSPKPQTTRHRIHGIHTTEHFQIVFVDTPGMHLGA 81

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFPKNI-----DFIFIGTKSDLYS 333
              + +   +       + D IL + E    SK++ +            I +  K D + 
Sbjct: 82  SKSINRYMNRAANSAFGDVDAILFVVEAGRWSKEDQAVADKCQNLEVPVIVLVNKIDKFK 141

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E +                 +S++T  G + +  +I   +  +    P    + +  
Sbjct: 142 KKEELFPFLQKVGEKVPFEALIPVSAYTKSGFDAIEAEILKHIPEQPAIFPEDYITDRST 201

Query: 380 LYHLSQTVR 388
            +  S+ VR
Sbjct: 202 RFLASEIVR 210


>gi|313813037|gb|EFS50751.1| GTP-binding protein Era [Propionibacterium acnes HL025PA1]
 gi|327330798|gb|EGE72544.1| GTP-binding protein Era [Propionibacterium acnes HL097PA1]
          Length = 342

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 34/231 (14%)

Query: 209 QGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
             ++ E  R G+    +  +G  NAGKS+L NAL    +AI +  P TTR V+   +  E
Sbjct: 29  TARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDE 88

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEIS 315
              + + DT G+ +   ++ +      F      D+I +    N +          +   
Sbjct: 89  KSQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAE 148

Query: 316 FPKNIDFIFIGTKSDLYSTYTEE------------------YDHLISSFTGEGLEELINK 357
            P+    I + TKSDL S                            S+ +GE ++E+ + 
Sbjct: 149 LPRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDV 208

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLDII 405
           I S+L       P    + +     +++ +R   +  + E       ++I+
Sbjct: 209 IASLLPEGPAYYPDGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIV 259


>gi|224025981|ref|ZP_03644347.1| hypothetical protein BACCOPRO_02732 [Bacteroides coprophilus DSM
           18228]
 gi|224019217|gb|EEF77215.1| hypothetical protein BACCOPRO_02732 [Bacteroides coprophilus DSM
           18228]
          Length = 293

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 79/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + ++I T    TTR  +   L+ +   +  SDT G+ + +
Sbjct: 7   VNIVGNPNVGKSTLMNLLVGERISIATFKAQTTRHRIMGILNTDDMQIVFSDTPGVLKPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDL--- 331
             +++  +  +   + +AD++L + +   +        E     ++  + +  K DL   
Sbjct: 67  YKLQESMLNFSESALVDADVLLYVTDTIEQPDKNQEFMEKVRRLDVPVLLLINKIDLSNQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                     +    +     +S+     ++ ++ +I+ ++ +          + K   +
Sbjct: 127 KDLVKLVDQWHEMLPKAEIIPVSAKARFNVDAVMKRIRELIPDSPPYFGKDQLTDKPARF 186

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 187 FVTEIIR 193


>gi|116670027|ref|YP_830960.1| small GTP-binding protein [Arthrobacter sp. FB24]
 gi|116610136|gb|ABK02860.1| small GTP-binding protein [Arthrobacter sp. FB24]
          Length = 522

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 85/217 (39%), Gaps = 22/217 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+ +I++     + K     RN    + I G++NAGKSSL N L   
Sbjct: 264 ELDRRRIRTRMAKLRREIAAMKPARETKRANRRRNSVPSVAIAGYTNAGKSSLLNRLTDA 323

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G    ++DT G   +      E  + T  EV ++DLI
Sbjct: 324 GVLVENALFATLDPTVRKAETADGLGYTLADTVGFVRSLPTQLVEAFRSTLEEVADSDLI 383

Query: 303 LLLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTY-------TEEYDHLI 343
           L + +++                    + +  I +  K+D    +        E    ++
Sbjct: 384 LHVVDVSHPDPEGQIAAVRAVFSEVDARKVPEIIVLNKADAADPFVVERLKQREPRHVVV 443

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           S+ TG+G+ EL+  I   +     K+   IP ++  L
Sbjct: 444 SARTGQGIAELLKAISESIPRPSVKMELLIPYNRGDL 480


>gi|110633305|ref|YP_673513.1| GTP-binding protein Era [Mesorhizobium sp. BNC1]
 gi|110284289|gb|ABG62348.1| GTP-binding protein Era [Chelativorans sp. BNC1]
          Length = 305

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 78/197 (39%), Gaps = 30/197 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++      +   +   DT G
Sbjct: 12  RSGF-VALIGAPNAGKSTLLNQLVGAKVSIVTHKVQTTRALVRGIATRDRTQIVFVDTPG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------------NSKKEISFPKNIDFIF 324
           I +    +++  +   +   ++AD++  L +             ++  E+  PK    I 
Sbjct: 71  IFKPRRRLDRAMVTTAWGGAKDADIVAFLLDAERGIRGDAETILDNLSEVRQPK----IL 126

Query: 325 IGTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           I  K D                  + +   +IS+ TG+G ++L+  +   L       P 
Sbjct: 127 ILNKVDRIKRDKLLVLAAEANERVSFDRTFMISALTGDGCDDLLGYLAEALPEGPWYYPE 186

Query: 372 SIPSHKRHLYHLSQTVR 388
              S        ++  R
Sbjct: 187 DQISDLPMRQLAAEITR 203


>gi|206895731|ref|YP_002246848.1| GTP-binding protein Era [Coprothermobacter proteolyticus DSM 5265]
 gi|206738348|gb|ACI17426.1| GTP-binding protein Era [Coprothermobacter proteolyticus DSM 5265]
          Length = 299

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 79/190 (41%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G  + GKS+L N L K+ V+IVT    TTR  +   L+  +G  +   D  G ++ 
Sbjct: 10  VSLVGRPSVGKSTLINNLVKQKVSIVTPRAQTTRRPIRAILNTEDGSQIVFVDLPGAKKP 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISFPKN-----IDFIFIGTKSDL 331
            D + +  +   +  V ++DL L + + +S      +I   +N     +  + +  KSDL
Sbjct: 70  YDALGEYLLDSVWRNVGDSDLALFVVDGSSVPPGPGDIFVARNLMKTGVPALLVMNKSDL 129

Query: 332 YSTYTEEYDHLI-------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                 E    +             S+  G  L+ L+N +   L    +  P  + + + 
Sbjct: 130 ICDDQVEERLRMFESLGDFVGSVAISALNGSNLDRLVNLVLDHLDEGPQFYPEGMQTDQP 189

Query: 379 HLYHLSQTVR 388
               + + +R
Sbjct: 190 LEQFIGEIIR 199


>gi|310815879|ref|YP_003963843.1| GTP-binding protein HflX [Ketogulonicigenium vulgare Y25]
 gi|308754614|gb|ADO42543.1| GTP-binding protein HflX [Ketogulonicigenium vulgare Y25]
          Length = 432

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 87/222 (39%), Gaps = 28/222 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDV 244
             + +   +L L+  +        L    R       + ++G++NAGKSSLFN +   DV
Sbjct: 169 DRRAIDEQLLRLERQLEKVQKTRALHRAARAKVPYPIVALVGYTNAGKSSLFNRVTGADV 228

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +  D    T D     L L +G  V +SDT G             + T  EV  ADLIL
Sbjct: 229 -LAKDQLFATLDPTMRRLTLPDGQEVIMSDTVGFISDLPTQLVAAFRATLEEVLEADLIL 287

Query: 304 LLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEE----------YD 340
            +++I+  +             +I  P++   + +  K DL      E            
Sbjct: 288 HVRDISHPQTAQQARDVMQILHQIGVPEDAPMLEVLNKIDLLDEAGREAFQTEAARKDAK 347

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
             +S+ TGEG+E L+ +I + L+  F      +P     L  
Sbjct: 348 IAVSALTGEGVEALLEQISAALAPPFLIEDLRLPHTAGKLRA 389


>gi|291544277|emb|CBL17386.1| GTP-binding protein Era [Ruminococcus sp. 18P13]
          Length = 297

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 85/213 (39%), Gaps = 23/213 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G +NAGKSSL NAL  + +A V++ P TTR  +T    +    +   DT G+ +  
Sbjct: 7   VTIAGRTNAGKSSLLNALVGEKIASVSNKPQTTRTRITGIKTIGDTQLVFMDTPGLHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLY- 332
           + + +  +      V + DL+L + +     + +E +       +    I I  K DL  
Sbjct: 67  NKLSEHMLNTVTESVVDIDLLLFMMDCTRQMTPQEEAMLLDCKRRKRPVIVILNKIDLLE 126

Query: 333 -------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                        S +       IS    +G++ +  ++ S         P  + + +  
Sbjct: 127 DKTRLAGMMVGIQSRFDPASIIPISVTEQDGVDLVEQEVLSHAKESPHFFPDEMFTDQPE 186

Query: 380 LYHLSQTVR-YLEMASLNEKDCGLDIIAENLRL 411
               ++ VR  L     +E   G+ ++ E++  
Sbjct: 187 KVIAAEMVREQLLRMLDDEVPHGIAVMTESMTE 219


>gi|303288864|ref|XP_003063720.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454788|gb|EEH52093.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 292

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 23/194 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY + I+G  NAGKS+  NAL    ++IVT  P TTR  +   +  + + + + DT G
Sbjct: 2   RSGY-VAIVGRPNAGKSTFMNALVGTKLSIVTYKPQTTRHRILGLVSEDDFQMVLLDTPG 60

Query: 277 I-RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----EISFPKNI------DFIFI 325
           + RE  + +++  +K     + NAD++L + +         E   P+            I
Sbjct: 61  VMREEFNKLDEMMLKSVRNAMANADVLLAIVDARRDPLGNFEGLLPERRPGDDPAPLGII 120

Query: 326 GTKSDLY-----------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             K DL            S    E    +S+  G G + +     S L       P    
Sbjct: 121 INKCDLLGVDEIRRKTFESYPGVERVFPVSALAGVGHDAVQRWAVSKLPVGPTLYPKDAI 180

Query: 375 SHKRHLYHLSQTVR 388
           S     + +++ +R
Sbjct: 181 SEHPERFFIAEIIR 194


>gi|218671650|ref|ZP_03521319.1| GTP-binding protein Era [Rhizobium etli GR56]
          Length = 274

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 79/198 (39%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 24  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSDLY- 332
             +++  +   +   ++ADLI+LL +       +++  +   K      I +  K D   
Sbjct: 84  RRLDRAMVTSAWGGAKDADLIMLLIDSERGLRGDAEAILEGLKEVQQPKILVLNKIDRVN 143

Query: 333 ------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                            E   +IS+  G G +++++ + + L       P    S     
Sbjct: 144 REDLLALAASANEKIAFERTFMISAENGSGCDDVMDYLAATLPEGPWYYPEDQISDLPMR 203

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+++
Sbjct: 204 QLAAEITREKLFLRLHQE 221


>gi|163760113|ref|ZP_02167196.1| GTP-binding protein [Hoeflea phototrophica DFL-43]
 gi|162282512|gb|EDQ32800.1| GTP-binding protein [Hoeflea phototrophica DFL-43]
          Length = 413

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 69/342 (20%), Positives = 127/342 (37%), Gaps = 38/342 (11%)

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG- 121
           + L++   +P   T          G +  V G++E       +         +R  E   
Sbjct: 17  EALIVPISAPRPST------LFGKGKMLEVKGVIETTGSGLVIVDHPLTPVQQRNMETEW 70

Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           K+ +++   L   I       R   ++     L+   G+ +   TH+             
Sbjct: 71  KVKVIDRTGLILEIFGRRASTREGVLQVELAHLNYQKGRLVRSWTHLERQRGGGGFMGGP 130

Query: 182 EDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFN 237
            + Q  + + +L D +  L+ ++       +L    R       + ++G++NAGKS+LFN
Sbjct: 131 GETQIEADRRLLQDRIVKLERELEQVRRTRQLHRAKRKKVPHPIVALVGYTNAGKSTLFN 190

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
            +   +V +  D+   T D     + L  G  V +SDT G   +         + T  EV
Sbjct: 191 RVTGAEV-LAEDMLFATLDPTLRRMKLPHGNTVILSDTVGFISSLPTHLVAAFRATLEEV 249

Query: 297 ENADLILLLKEINSKKEISFP---------------KNIDFIFIGTKSDLYSTYT----- 336
             ADLIL ++++      S                      + +  K DL S        
Sbjct: 250 VEADLILHVRDMADPDRASQAGDVEEILKSLGLNEGDGRKLVEVWNKIDLLSEEAAEDLK 309

Query: 337 -----EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                 E    +SS TGEG++EL+ +I++I+S K      ++
Sbjct: 310 TRAEKSENAIAVSSVTGEGIDELLMRIETIISGKLVSRNVTL 351


>gi|332876945|ref|ZP_08444698.1| ribosome biogenesis GTPase Era [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332685053|gb|EGJ57897.1| ribosome biogenesis GTPase Era [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 293

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 80/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   +  + + V  SDT GI +  
Sbjct: 7   VNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRIFGIVSGDDFQVVFSDTPGIIKPA 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDL--- 331
             +++  +       ++AD+++ + EI     K+E  F +    NI  + +  K D    
Sbjct: 67  YALQESMMAFVKDAFDDADILIYMVEIGEKGLKEEAFFDRINKLNIPILLLINKIDTSEQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                              + IS+      +E+ ++I ++L       P    + K   +
Sbjct: 127 QVLEEQVAYWKEQVPRAEVYPISALRNFQTKEVFDRILALLPESPAFFPKDQLTDKPERF 186

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 187 FVNEIIR 193


>gi|312195030|ref|YP_004015091.1| GTP-binding proten HflX [Frankia sp. EuI1c]
 gi|311226366|gb|ADP79221.1| GTP-binding proten HflX [Frankia sp. EuI1c]
          Length = 482

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 87/236 (36%), Gaps = 21/236 (8%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +  +  +     ++ +     +          + I G++NAGKSSL N L    V +   
Sbjct: 230 RARIAKLRRELREMETVRETKRSSRKRGEVPSVAIAGYTNAGKSSLLNRLTGAGVLVEDA 289

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  T    +      +G    ++DT G          E  + T  EV +ADLIL + + +
Sbjct: 290 LFATLDPTVRRATLPDGRAFTLTDTVGFVRHLPHQIVEAFRSTLEEVADADLILHVVDGS 349

Query: 310 SKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYD-------HLISSFTGEG 350
               +                ++  + I  K+D+    T             +S+ TG G
Sbjct: 350 HADPVGQLSAVREVLNDIDAGDVPELVIVNKTDIADKTTVAAIRRVAPDAVCVSARTGAG 409

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
           + EL+  + + + +   ++   +P ++  L  +++     E+        G ++ A
Sbjct: 410 IAELVEALATRVPHPQVEVDVVVPYNRGDL--VARVHESGEVLHQGHNATGTELRA 463


>gi|183599776|ref|ZP_02961269.1| hypothetical protein PROSTU_03284 [Providencia stuartii ATCC 25827]
 gi|188022040|gb|EDU60080.1| hypothetical protein PROSTU_03284 [Providencia stuartii ATCC 25827]
          Length = 302

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +      + Y +   DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEDEYQIIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E        E+   K        I    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTNWTDDDEMVLNKLKGLRCPVILAINKIDNVT 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T    H               IS+  G+G++ +   +K  +       P    + +  
Sbjct: 131 DKTVLLPHIGFVSQKMNFLDVVPISAEKGKGVDTIAKIVKQHIPEAEHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|152978262|ref|YP_001343891.1| GTP-binding protein Era [Actinobacillus succinogenes 130Z]
 gi|150839985|gb|ABR73956.1| GTP-binding protein Era [Actinobacillus succinogenes 130Z]
          Length = 309

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 19  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGPYQAVYVDTPGLHIEE 78

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     + + DLI+ + +    N   E+   K        +    K D   
Sbjct: 79  KRAINRLMNRAASSAIGDVDLIIFVVDGTHWNEDDEMVLNKLRQAKAPVVLAINKIDNVK 138

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L   +       IS+  G  + +L   ++  L       P    + +  
Sbjct: 139 NKDELLPFITELSGKFNFADIVPISAQRGNNVHKLQEIVRCSLKPGIHHFPEDYITDRSQ 198

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 199 RFMASEIIR 207


>gi|225575179|ref|ZP_03783789.1| hypothetical protein RUMHYD_03268 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037587|gb|EEG47833.1| hypothetical protein RUMHYD_03268 [Blautia hydrogenotrophica DSM
           10507]
          Length = 402

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 97/238 (40%), Gaps = 50/238 (21%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           +   I   G  NAGKSS+ NA+  +D+A+V+D+ GTT D ++  ++L     V I DT G
Sbjct: 10  DRVHIGFFGMRNAGKSSVVNAVTGQDLAVVSDVRGTTTDPVSKAMELLPLGPVVIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLE----------------VENADLILLLKEINSKKEISFPKNI 320
           + +   + E   +K+                    ++ AD  LL         I   K I
Sbjct: 70  MDDEGALGELR-VKKARQVLNKTDVAVLVVDAAVGMKEADQELL--------SIIKEKEI 120

Query: 321 DFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLEELINKIKS----------ILSNKFKK 368
            ++ +  K+DL        E +  +S+ TGE + EL  KI +          I+ +  + 
Sbjct: 121 PYVVVYNKADLLKERQPEGEGEIYVSAVTGEKIYELKEKIAALAVTEEPKLRIVGDLLRP 180

Query: 369 LPFSIP--------SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
             F I            R +    QT+R +    L+     + +  + LR    SLGK
Sbjct: 181 SDFVILVIPIDKAAPKGRLILPQQQTIRDI----LDSNGVSIVVREDALRETLESLGK 234


>gi|315634821|ref|ZP_07890103.1| GTP-binding protein Era [Aggregatibacter segnis ATCC 33393]
 gi|315476373|gb|EFU67123.1| GTP-binding protein Era [Aggregatibacter segnis ATCC 33393]
          Length = 301

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 12  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGPYQEIYVDTPGLHIEE 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----------NIDFIFIG 326
              + +   +     + + DL++ + +    N   E+   K                 I 
Sbjct: 72  KRAINRLMNRAASSAITDVDLVIFVVDGTHWNDDDEMVLNKLRKTKVPVVLAINKIDNIK 131

Query: 327 TKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL    TE            IS+  G  LE + N ++  L       P    + +  
Sbjct: 132 NKDDLLPFITEISSKFTFTDIVPISAEKGNNLEVIENIVRKSLRPGGHHFPEDYVTDRSQ 191

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 192 RFMASEIIR 200


>gi|315444872|ref|YP_004077751.1| GTP-binding protein HflX [Mycobacterium sp. Spyr1]
 gi|315263175|gb|ADT99916.1| GTP-binding protein HflX [Mycobacterium sp. Spyr1]
          Length = 482

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 95/247 (38%), Gaps = 31/247 (12%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +E ++ +     D+       +   +  +   + I+G++NAGKSSL NAL    V +V +
Sbjct: 229 RERMSKLRREIRDMKQVRDTQRSRRLANDVPSVAIVGYTNAGKSSLLNALTGAGV-LVEN 287

Query: 250 IPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T +  T   +L +G    ++DT G          E  + T  EV +A+L+L + + 
Sbjct: 288 ALFATLEPTTRRGELSDGREFVLTDTVGFVRHLPTQLVEAFRSTLEEVVDAELLLHVVDG 347

Query: 309 NSKKEISFPKNIDFI----------------FIGTKSDLYSTY-------TEEYDHLISS 345
           +    ++    +  +                 +  K D                   +S+
Sbjct: 348 SDANPLAQINAVRTVVNEVVAETDATAPPELLVVNKIDAADGLVLAQLRQALPGAVFVSA 407

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS------HKRHLYHLSQTVRYLEMASLNEKD 399
            TGEGL+ L  ++  +++ +   +  +IP       ++ H       V ++E  +  +  
Sbjct: 408 RTGEGLDRLQGRLAEMIAPRDTVVDVTIPYSRGDLVNRVHAEGRVDAVEHIEAGTRLKAR 467

Query: 400 CGLDIIA 406
             + + A
Sbjct: 468 VPIALAA 474


>gi|226366173|ref|YP_002783956.1| GTP-binding protein HflX [Rhodococcus opacus B4]
 gi|226244663|dbj|BAH55011.1| putative GTP-binding protein HflX [Rhodococcus opacus B4]
          Length = 484

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 81/222 (36%), Gaps = 28/222 (12%)

Query: 188 SSKEVLNDILFLKNDIS--SHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
             + +   +  L+ +I         K    +R     I I+G++NAGKSSL NAL    V
Sbjct: 225 DRRRIRERMAKLRREIKGMKAARDTKRTRRLRSETPSIAIVGYTNAGKSSLLNALTGSGV 284

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V +    T D  T    L +G    ++DT G          E  + T  EV +ADL+L
Sbjct: 285 -LVQNALFATLDPTTRRAALDDGREYVLTDTVGFVRHLPTQLIEAFRSTLEEVTDADLLL 343

Query: 304 LLKEINSKKEISFPK----------------NIDFIFIGTKSDLYSTYT-------EEYD 340
            + + +        K                    + +  K D     T           
Sbjct: 344 HVVDGSDPLPTDQIKAVHEVITEVIRENDAAAPPELIVVNKIDAADPVTLTQLRGLLPGA 403

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
             +S+ TGEG+ EL   +  +L     ++   +P ++  L  
Sbjct: 404 SFVSARTGEGVAELRAHLSDVLVRPEIEVSVLLPYNRGDLMA 445


>gi|257452216|ref|ZP_05617515.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
 gi|317058759|ref|ZP_07923244.1| small GTP-binding protein [Fusobacterium sp. 3_1_5R]
 gi|313684435|gb|EFS21270.1| small GTP-binding protein [Fusobacterium sp. 3_1_5R]
          Length = 400

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 11/130 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   +   G  NAGKSSLFN L  +D ++V+   GTT D +   ++L GY  +++ DTAG
Sbjct: 9   NRKHVAFFGKRNAGKSSLFNLLLGEDYSLVSSHLGTTTDPVYKAMELVGYGPIRLIDTAG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK---------NIDFIFIGT 327
           + +  ++ E   +K++   +   D+ + + + + +  +   +         +I ++F+  
Sbjct: 69  LDDIGELGELR-VKKSKEVLRKIDMAIYVLDASQEITVEEREEAKKLFQRFHIPYVFVWN 127

Query: 328 KSDLYSTYTE 337
           K D+     E
Sbjct: 128 KRDMIGEILE 137


>gi|30693524|ref|NP_198812.2| GTP-binding family protein [Arabidopsis thaliana]
          Length = 616

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 77/195 (39%), Gaps = 10/195 (5%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKND-ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
              ED       ++ +    L ++ +S  I + KL        ++ I+G  N GKS+L N
Sbjct: 277 PLLEDYTVEMLNDIGSQDDVLTDENLSDEIDESKL------PLQLAIVGKPNVGKSTLLN 330

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFL 294
           AL +++  +V    G TRD + +  + +G  V + DTAG     E D       I ++  
Sbjct: 331 ALLEEERVLVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLERTERDKGPASLSIMQSRK 390

Query: 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
            +  A +I L+ +     +         + I  ++           + +    G    E+
Sbjct: 391 SLMRAHVIALVLDAEEIIKAKCSMTHSEVVIARRAVEEGRGLVVIVNKMDRLRGRENSEM 450

Query: 355 INKIKSILSNKFKKL 369
             KIK  +  + + +
Sbjct: 451 YKKIKEAVPIEIQTV 465



 Score = 47.9 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 75/210 (35%), Gaps = 35/210 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIP--GTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++++G  N GKS+L+N       A+V + P    TRD+      L      + D+AGI  
Sbjct: 120 VMLMGRPNVGKSALYNR-----EALVYNTPDDHVTRDIREGIAKLGDLRFNVLDSAGIET 174

Query: 280 TDDIVEKEGIKRTFLE--VENADLILLLKEINS----------KKEISFPKNIDFIFIGT 327
                   G         +      +L+ ++ +          K        I  I +  
Sbjct: 175 EVSSGTILGRTTAMTANVLARTQFAVLIIDVRAGLHPLDLEVGKWLRKHAPQIKPIVVMN 234

Query: 328 KSDLYSTYTE----------EYDHLISSFTGEGLEELINKIKSILSNKFKKL------PF 371
           KS+   +  E               IS+ TG G+  L   ++ +L +   ++        
Sbjct: 235 KSESIGSLDEVASEALALGFGEPIAISAETGLGMTTLYEVLRPLLEDYTVEMLNDIGSQD 294

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            + + +     + ++   L++A + + + G
Sbjct: 295 DVLTDENLSDEIDESKLPLQLAIVGKPNVG 324


>gi|239831497|ref|ZP_04679826.1| GTP-binding protein Era [Ochrobactrum intermedium LMG 3301]
 gi|239823764|gb|EEQ95332.1| GTP-binding protein Era [Ochrobactrum intermedium LMG 3301]
          Length = 311

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 81/203 (39%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++          + + DT G
Sbjct: 18  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIVLVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTK 328
           I      +++  +   +   ++AD+IL+L +       N++  +S  K+     + +  K
Sbjct: 77  IFRPKRRLDRAMVTTAWGGAKDADIILVLLDSQGGLNENAEALLSSMKDVRQKKVLVLNK 136

Query: 329 SDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D                    +   ++S+  G G ++L   +   + N     P    S
Sbjct: 137 VDRVDPPVLLDLARKANELVAFDQTFMVSALNGSGCKDLAKYLADNVPNGPWYYPEDQIS 196

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+E+
Sbjct: 197 DMPMRQLAAEITREKLYLRLHEE 219


>gi|325523761|gb|EGD02015.1| GTPase Era [Burkholderia sp. TJI49]
          Length = 299

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 66/191 (34%), Gaps = 15/191 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T     E       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTTEDAQFIFVDTPGFQTRH 73

Query: 282 DIVEKEGIKRTFLE-VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                  + R     + + D IL + E       + K     P     + I  K D    
Sbjct: 74  STALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPGTPTLLIANKLDRVGD 133

Query: 335 YTEEYDHLISSFTGEGLEELI-------NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
               +  +    T     E++         IK +L      LP   P +        ++ 
Sbjct: 134 KDTLFPFMQQMSTLREFAEIVPLSAKQPEDIKRLLETIKPYLPEGEPIYGED-DLTDRSS 192

Query: 388 RYLEMASLNEK 398
           R+L    L EK
Sbjct: 193 RFLAAEILREK 203


>gi|24375414|ref|NP_719457.1| GTP-binding protein [Shewanella oneidensis MR-1]
 gi|24350252|gb|AAN56901.1|AE015824_12 GTP-binding protein [Shewanella oneidensis MR-1]
          Length = 394

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
           Y I ++G  N+GKSSL N LA + ++IV+DI GTT D +    +L+    V   DTAGI 
Sbjct: 3   YHIALVGRRNSGKSSLLNMLAGQQISIVSDIKGTTTDAVAKAYELQPLGPVTFYDTAGID 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFPK-----NIDFIFIGTKSDL 331
           +   +     +  T   +  +D+ LL+ +       +++         +  + +  K+D+
Sbjct: 63  DEGTLGAMR-VSATRRVLFRSDMALLVVDEQGLCPSDMALIDEIRQLQMPILMVFNKADI 121

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
            +   E+              S+ TG   ++L   +  +   ++K+ P 
Sbjct: 122 CTPKAEDIAFCQNQSLPFIVVSAATGLAGKQLKQLMVELAPAEYKQEPL 170


>gi|150021239|ref|YP_001306593.1| small GTP-binding protein [Thermosipho melanesiensis BI429]
 gi|149793760|gb|ABR31208.1| small GTP-binding protein [Thermosipho melanesiensis BI429]
          Length = 396

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 16/161 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  N GKSS  NAL  ++V+IV+++ GTT D +   ++L     + + DT G+ + 
Sbjct: 11  IAITGRRNVGKSSFMNALIGQEVSIVSNVAGTTTDPVFKSMELSPVGPITLIDTPGLDDV 70

Query: 281 DDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISFPK-----NIDFIFIGTKSDLYST 334
            ++  K  IK+    +  AD  IL++ +I    E    K      I +     K D    
Sbjct: 71  GELGIKR-IKKAKKSLYRADCGILIVDDIPGNFEEQIIKLFKELEIPYFIAINKIDTIDH 129

Query: 335 YTEEYDHLI--------SSFTGEGLEELINKIKSILSNKFK 367
              E ++          S+    G E++   I SIL    +
Sbjct: 130 ENIEKEYKKYNVPILKVSALKKIGFEKIGKTINSILPKDDE 170


>gi|118497735|ref|YP_898785.1| GTP-binding protein Era [Francisella tularensis subsp. novicida
           U112]
 gi|194323707|ref|ZP_03057483.1| GTP-binding protein Era [Francisella tularensis subsp. novicida
           FTE]
 gi|118423641|gb|ABK90031.1| GTP-binding protein [Francisella novicida U112]
 gi|194322071|gb|EDX19553.1| GTP-binding protein Era [Francisella tularensis subsp. novicida
           FTE]
          Length = 297

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 21/164 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N + K  V+I +  P TTR  +T    L        DT GI  + 
Sbjct: 7   ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSD--- 330
              + K   K      ++ D+IL + E+    E+            I    +  K D   
Sbjct: 67  PKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKHSEIPIFLVVNKVDKKK 126

Query: 331 ------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSN 364
                    +  E+         S+  G  + EL ++I+ +L  
Sbjct: 127 SLEAAMFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLLPE 170


>gi|118577285|ref|YP_899525.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379]
 gi|118504790|gb|ABL01272.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379]
          Length = 664

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 19/165 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KIV++G+ N GKS+LFN L    V  V++ PGTT +V      ++G    + DT G+   
Sbjct: 22  KIVMVGNPNVGKSALFNRLTGSYVT-VSNYPGTTVEVSQGKCKIDGEEYSVEDTPGMYSL 80

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYST 334
             I E+E + R  L    +D++L + +  + K +          ++  I +    D  + 
Sbjct: 81  LPITEEERVSRDILLTGKSDVVLCVVDAKNLKRMLSLALQLVEASLPVILVLNMMDEANR 140

Query: 335 YTEEYD------------HLISSFTGEGLEELINKIKSILSNKFK 367
                D              IS+ +G+G++ L ++I S    +  
Sbjct: 141 LDIRIDEGGLEKKLGIPVVGISALSGKGVDVLKSRIHSYCRQEST 185


>gi|306836628|ref|ZP_07469594.1| GTP-binding protein Era [Corynebacterium accolens ATCC 49726]
 gi|304567458|gb|EFM43057.1| GTP-binding protein Era [Corynebacterium accolens ATCC 49726]
          Length = 345

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 80/222 (36%), Gaps = 28/222 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  E   V + D
Sbjct: 45  EGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHTIRGLVHREDAQVVVVD 103

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFI 323
           T G+     ++ +   +       + D+I L    + K             S       I
Sbjct: 104 TPGLHRPRTLLGERLNEVVKETYADVDVIGLTIPADEKIGPGDRWILDNVRSIAPKTPII 163

Query: 324 FIGTKSD-----------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            I TK D                 L     E     +SS  G  L++L+  I   L    
Sbjct: 164 GIVTKLDKVSKDQVGAQLLALHELLSQEDPEAVVIPVSSKKGVQLDDLVQVILDHLPEGP 223

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           K  P    + +R    + + +R   ++ L  +      +  +
Sbjct: 224 KFYPDDHITDERQEKRIEELIREAALSGLKAELPHSVAVQID 265


>gi|119961109|ref|YP_947366.1| GTP-binding protein [Arthrobacter aurescens TC1]
 gi|119947968|gb|ABM06879.1| putative GTP-binding protein [Arthrobacter aurescens TC1]
          Length = 629

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 82/214 (38%), Gaps = 22/214 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+ +I++     + K     RN    + I G++NAGKSSL N L   
Sbjct: 371 ELDRRRIRTRMAKLRREIAAMKPARETKRANRRRNAVPSVAIAGYTNAGKSSLLNRLTDA 430

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G    ++DT G   +      E  + T  EV +ADLI
Sbjct: 431 GVLVENALFATLDPTVRKAQTPDGIGYTLADTVGFVRSLPTQLIEAFRSTLEEVADADLI 490

Query: 303 LLLKEINSKKE------------ISFPKNIDFIFIGTKSDLYSTY-------TEEYDHLI 343
           L + + +                    + +  I +  K D+   +        E    ++
Sbjct: 491 LHVVDASHPDPEGQIAAVRAVFTEVDARKVPEIIVLNKVDVADPFVVERLKQKEPRHAVV 550

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           S+ TG+G+ EL+  I   +     +L   IP  +
Sbjct: 551 STRTGQGIAELLEDISRSIPRPGVRLELLIPYDR 584


>gi|332296332|ref|YP_004438255.1| small GTP-binding protein [Thermodesulfobium narugense DSM 14796]
 gi|332179435|gb|AEE15124.1| small GTP-binding protein [Thermodesulfobium narugense DSM 14796]
          Length = 418

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 9/137 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I +LG +N GKSS  N +  +DV+I++ IPGTT DV+   ++L     V   DTAG
Sbjct: 8   NRLHIALLGRTNVGKSSFLNMITGQDVSIISSIPGTTTDVVEKAMELLPIGPVLFLDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEI---SFPKNIDFIFIGTKS 329
             +   +     +K+T+     AD+ +LL E     + ++EI   +  + I  I I  K 
Sbjct: 68  FDDKSTLANLR-LKKTYNVFNRADVAVLLLEPEVWTDYEEEILKETQKREIPLIAIINKI 126

Query: 330 DLYSTYTEEYDHLISSF 346
           DL        + L S  
Sbjct: 127 DLKEPSNNFINQLRSRI 143


>gi|308069435|ref|YP_003871040.1| hypothetical protein PPE_02674 [Paenibacillus polymyxa E681]
 gi|305858714|gb|ADM70502.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 417

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 10/122 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   IV+LG  NAGKSS+ N L  + VA+V+ + GTT D +   ++ L    + + DTAG
Sbjct: 10  NRPHIVLLGRRNAGKSSILNTLTGQPVAVVSPVGGTTTDPVFKPMELLPAGPIVLVDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTK 328
           + +  +I E     +T   + + DL LL+ +             E    K I  I +  K
Sbjct: 70  LDDEGEIGELR-RNKTLEILNSTDLALLVIDATVGVGPFEHELLEKLRTKKIPVIGVLNK 128

Query: 329 SD 330
            D
Sbjct: 129 VD 130


>gi|257465989|ref|ZP_05630300.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917145|ref|ZP_07913385.1| small GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691020|gb|EFS27855.1| small GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 400

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 11/130 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   +   G  NAGKSSLFN L  +D ++V+   GTT D +   ++L GY  +++ DTAG
Sbjct: 9   NRKHVAFFGKRNAGKSSLFNLLLGEDYSLVSSHLGTTTDPVYKAMELVGYGPIRLIDTAG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK---------NIDFIFIGT 327
           + +  ++ E   +K++   +   D+ + + + + +  +   +         +I ++F+  
Sbjct: 69  LDDIGELGELR-VKKSKEVLRKIDMAIYVLDASQEITVEEREEAKKLFQRFHIPYVFVWN 127

Query: 328 KSDLYSTYTE 337
           K D+     E
Sbjct: 128 KRDMIGEILE 137


>gi|315639031|ref|ZP_07894201.1| GTP-binding protein Era [Campylobacter upsaliensis JV21]
 gi|315480943|gb|EFU71577.1| GTP-binding protein Era [Campylobacter upsaliensis JV21]
          Length = 291

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 87/187 (46%), Gaps = 22/187 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ I ++G +NAGKS+L N+L ++ +A+V+     TR  +   +  +   +   DT 
Sbjct: 1   MKSGF-ISLIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMQDDNQLIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNIDFIFIGTKSD 330
           G+ E+   + +  ++     +++ D+I+ +  +     + +K ++    I  + +  K D
Sbjct: 60  GLHESKATLNQLLVQSAMKAMKDCDVIVFVASVFDEISDYEKFLALKPQIPHLVVLNKVD 119

Query: 331 L------------YSTYTEEY--DHLISSFTGEGLEELINKIKSIL--SNKFKKLPFSIP 374
           L            Y+ ++ ++      S       + L+++I  +L     F    F  P
Sbjct: 120 LAKNEEVLQKLSEYAKFSGDFQAILPYSCKQKSYKKALLDEIIKLLPKHEHFYDPAFLTP 179

Query: 375 SHKRHLY 381
           S+++ L+
Sbjct: 180 SNEKELF 186


>gi|242055911|ref|XP_002457101.1| hypothetical protein SORBIDRAFT_03g001220 [Sorghum bicolor]
 gi|241929076|gb|EES02221.1| hypothetical protein SORBIDRAFT_03g001220 [Sorghum bicolor]
          Length = 604

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 17/157 (10%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+ L   + IS   ++   G+  +   ++ I+G  N GKS+L N L ++   +V    G 
Sbjct: 276 NNDLNQDDPISEVETEAHEGDESKLPLQLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGL 335

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLLKEIN- 309
           TRD +      +   V + DTAG  E    +       + ++   +  A ++ L+ +   
Sbjct: 336 TRDSIRAQFQFDNRTVYLVDTAGWMERSGKEKGPASLSVVQSRKNLMRAHIVALVLDAEK 395

Query: 310 ---SKKEISFP----------KNIDFIFIGTKSDLYS 333
              SK  ++ P          +    + I  K DL  
Sbjct: 396 IAKSKSSMNHPEVVIARQAIEEGRGLVVIVNKMDLLR 432



 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 27/176 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPG--TTRDVLTIDLDLEGYLVKISDTAGIR- 278
           ++++G  N GKS+LFN   ++  A+V + PG   TRD+      L     ++ D+AG+  
Sbjct: 100 VILVGRPNVGKSALFNRFIRRREALVYNTPGDHVTRDIREGVAKLGDLRFRVLDSAGLET 159

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFPKNIDFIFIG---------T 327
             T   +       T   +  +   + L ++ +  + +                      
Sbjct: 160 AATSGSILARTADMTGNVLARSQFAIFLIDVRDGLQPLDLEVGQWLRKHASGIHTLVAMN 219

Query: 328 KSD------LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
           KS+      L +    E           IS+ TG G+ EL   ++ +      +LP
Sbjct: 220 KSESLDEHGLLTAAAGEAHKLGFGDPVAISAETGLGMAELYEILRPLFEEYMFQLP 275


>gi|239982716|ref|ZP_04705240.1| ATP/GTP-binding protein [Streptomyces albus J1074]
 gi|291454564|ref|ZP_06593954.1| ATP/GTP-binding protein [Streptomyces albus J1074]
 gi|291357513|gb|EFE84415.1| ATP/GTP-binding protein [Streptomyces albus J1074]
          Length = 509

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 93/276 (33%), Gaps = 30/276 (10%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE-----EDVQNFSSKEV 192
           E + Q  L+       +      W   L+                    E       + +
Sbjct: 201 EGKAQVSLAQMQY---MLPRLRGWGQSLSRQMGGGGTSGGGGMATRGPGETKIETDRRRI 257

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTD 249
              +  ++ +I++  +  +L    R   K+    I G++NAGKSSL N L    V +   
Sbjct: 258 REKMAKMRREIAAMKTGRELKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENA 317

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  T    +       G L  ++DT G          E  + T  EV ++DLIL + +  
Sbjct: 318 LFATLDPTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGA 377

Query: 310 SKKEISFPK------------NIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGEG 350
                                N+  I +  K+D             E++   +S+ TG G
Sbjct: 378 HPAPEEQLAAVREVIRDVGAVNVPEIVVVNKADAADPLVLQRLLRVEKHAIAVSARTGAG 437

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           + EL+  I  IL     +L   IP  +  L   +  
Sbjct: 438 IGELLGMIDEILPRPEVELEALIPYTQGQLVARAHA 473


>gi|114799800|ref|YP_759605.1| GTP-binding protein Era [Hyphomonas neptunium ATCC 15444]
 gi|114739974|gb|ABI78099.1| GTP-binding protein Era [Hyphomonas neptunium ATCC 15444]
          Length = 315

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 79/220 (35%), Gaps = 36/220 (16%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI R G+   ++G  NAGKS+L N L    VAIVT    TTR  +     +    + I D
Sbjct: 5   EIRRAGF-CAVIGAPNAGKSTLTNRLVGAKVAIVTHKVQTTRFPVRGVAQVGDAQIVIVD 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------------------NSKKE 313
           T GI      +++  +K  +   + AD ++ L +                     + ++ 
Sbjct: 64  TPGIFAAKRRLDRAMVKAAWGGADEADCVVHLVDASAWVAEQTGRPSGAQRHSLEDDRRV 123

Query: 314 ISFPK--NIDFIFIGTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKI 358
           I   K           K DL+                  E   LIS+  GEG++ L   I
Sbjct: 124 IEQLKEAGKRVFLALNKIDLFPHDQVLPVIAALSEAGVYEETFLISAENGEGVDRLEAAI 183

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            + +       P    +        ++  R   M  L+++
Sbjct: 184 AARMPEGPALYPPDQIADLPMRLLAAEVTREKLMLRLHQE 223


>gi|54114479|gb|AAV29873.1| NT02FT1337 [synthetic construct]
          Length = 297

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 21/164 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N + K  V+I +  P TTR  +T    L        DT GI  + 
Sbjct: 7   LSIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSD--- 330
              + K   K      ++ D+IL + E+    E+            I    +  K D   
Sbjct: 67  PKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKHSEIPIFLVVNKVDKKK 126

Query: 331 ------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSN 364
                    +  E+         S+  G  + EL ++I+ +L  
Sbjct: 127 SLEAAMFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLLPE 170


>gi|169634287|ref|YP_001708023.1| GTP-binding protein [Acinetobacter baumannii SDF]
 gi|169153079|emb|CAP02149.1| GTP-binding protein [Acinetobacter baumannii]
          Length = 444

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 118/327 (36%), Gaps = 34/327 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W       +  I         E       + +  
Sbjct: 115 RARTHEGKLQVELAQLKHLSTRLIRGWSADFEQQKGGIGLR---GPGESQLETDRRLIRV 171

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  LK+ +         G   R       + ++G++NAGKS+LFN LAK DV    D  
Sbjct: 172 RITQLKDKLEKVHQTRMQGRAARQKASIPTVSLVGYTNAGKSTLFNILAKSDV-YAADQL 230

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     L+ +G   V ++DT G          E  K T  E   A L+L + + +S
Sbjct: 231 FATLDPTLRRLEWDGIGTVVLADTVGFVRNLQHDLVESFKATLEETLEATLLLHVIDSSS 290

Query: 311 KKEISFPK-----------NIDFIFIGTKSDL--------YSTYTEEYDHLISSFTGEGL 351
              +   K           +   + +  K DL        YS         +S+ +G GL
Sbjct: 291 HDMLDQIKAVEGVLKEIGADAPVLRVYNKIDLSGEEAKIIYSEPRVPDRVYVSAHSGLGL 350

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           + L   ++  L  + +     +      L      +  ++    +++     ++  ++R+
Sbjct: 351 DLLRQAVQECLMGQLQHFSLVLKPAYGKLRTQLYALNVIQSEHYDDEG----LLHIDIRI 406

Query: 412 ASVSLGKITGCVD--VEQLLDIIFSKF 436
           A   L ++       ++++L    S+F
Sbjct: 407 APHKLEQLIRQAKLPIDEILGERASQF 433


>gi|282934247|ref|ZP_06339524.1| tRNA modification GTPase MnmE [Lactobacillus jensenii 208-1]
 gi|281301721|gb|EFA93988.1| tRNA modification GTPase MnmE [Lactobacillus jensenii 208-1]
          Length = 92

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 351 LEELINKIKSILSNKFKK-LPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAEN 408
           + EL   I  +  +         + +++R    L +    L ++    + D  LDI   +
Sbjct: 1   MNELEEAISKLFFSGIHNSNDEVLVTNQRQAGLLEKAKDQLTDVVDAVDNDVPLDIAQID 60

Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
              A  +LG+ITG    ++L+  +FS+FC+GK
Sbjct: 61  FTGAWDTLGEITGDSAPDELITQLFSQFCLGK 92


>gi|218515109|ref|ZP_03511949.1| GTP-binding protein Era [Rhizobium etli 8C-3]
          Length = 272

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 79/198 (39%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 24  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKSDLY- 332
             +++  +   +   ++ADLI+LL +       +++  +   K      I +  K D   
Sbjct: 84  RRLDRAMVTSAWGGAKDADLIMLLIDSERGLRGDAEAILEGLKEVRQPKILVLNKIDRVN 143

Query: 333 ------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                            E   +IS+  G G +++++ + + L       P    S     
Sbjct: 144 REDLLALAASANEKIAFERTFMISAENGSGCDDVMDYLAATLPEGPWYYPEDQISDLPMR 203

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+++
Sbjct: 204 QLAAEITREKLFLRLHQE 221


>gi|254451323|ref|ZP_05064760.1| GTP-binding proten HflX [Octadecabacter antarcticus 238]
 gi|198265729|gb|EDY89999.1| GTP-binding proten HflX [Octadecabacter antarcticus 238]
          Length = 449

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 92/234 (39%), Gaps = 28/234 (11%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            LK  +S  +   +L    R       + ++G++NAGKS+LFN L+  DV    D+   T
Sbjct: 178 NLKKQLSKVVKTRELHRKARAKVPYPIVALVGYTNAGKSTLFNRLSGADV-FAHDMLFAT 236

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     ++L  G  V +SDT G             + T  EV  AD+IL +++I+  + 
Sbjct: 237 LDPTMRKVELPNGDEVIMSDTVGFISDLPTQLVASFRATLEEVLEADIILHVRDISHPQS 296

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYTEEY----------DHLISSFTGEG 350
                       ++    ++  I +  K DL       Y             IS+ TGEG
Sbjct: 297 AEQKKAVLDTLRQLDVNPDVPMIEVLNKIDLLEPEDAGYLQALHKDNDKVFGISAVTGEG 356

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           L+ L+N +   L  + + L   +           +    +E  +  +    LD+
Sbjct: 357 LDRLLNDVTDHLIVQTRTLTLDLDWAMGAAQSWLRAEGVIESEAQTDTGWTLDV 410


>gi|111115493|ref|YP_710111.1| GTP-binding protein Era [Borrelia afzelii PKo]
 gi|216263477|ref|ZP_03435472.1| GTP-binding protein Era [Borrelia afzelii ACA-1]
 gi|122956333|sp|Q0SMJ3|ERA_BORAP RecName: Full=GTPase Era
 gi|110890767|gb|ABH01935.1| GTP-binding protein [Borrelia afzelii PKo]
 gi|215980321|gb|EEC21142.1| GTP-binding protein Era [Borrelia afzelii ACA-1]
          Length = 290

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+   ILG  + GKS+L N++    ++I++ IP TTR+ +      +   +   DT 
Sbjct: 1   MKSGF-AAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGT 327
           G   +        +      +   +LIL + +I            EI     I F+ +  
Sbjct: 60  GFHLSKKKFNIAMMNNIHSSIGEVELILYIIDIQDTPGEEENKMLEIIKNSKIKFLVLLN 119

Query: 328 KSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K DL +T  +E                 IS+      EEL NKI    S      P    
Sbjct: 120 KVDLKNTKIKEITQFLKEKGIEDSNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYY 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + ++  + +S+ +R   + +L E+
Sbjct: 180 TDQKINFRISEIIREKAIENLKEE 203


>gi|71064931|ref|YP_263658.1| GTP - binding protein, phage lambda cII repressor [Psychrobacter
           arcticus 273-4]
 gi|71037916|gb|AAZ18224.1| probable GTP - binding protein, possible phage lambda cII repressor
           [Psychrobacter arcticus 273-4]
          Length = 489

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 118/318 (37%), Gaps = 31/318 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  ++   + L   W   L   +  I        + +      +  + 
Sbjct: 116 RARTYEGKLQVELAQLNHLSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLQVRVM 174

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +      +    +QG+      +   I ++G++NAGKS+LFN L  +++    D    T
Sbjct: 175 QLKSRIEKVRQTRAQGRARRQKSDVPTISLVGYTNAGKSTLFNRLVDENI-YAADKLFAT 233

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     LD +G   V + DT G          E    T  E   ADL+L + + +S+  
Sbjct: 234 LDPTLRRLDWQGVGRVVLVDTVGFVRHLPHELVESFHATLEETLEADLLLHVIDSSSEDM 293

Query: 314 -----------ISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLISSFTGEGLEEL 354
                           ++  + +  K DL        Y++  +     +SS    G+EEL
Sbjct: 294 HEQIQAVKDVLAEIDNDVPVLNVYNKIDLTDEPARIGYASEGQPNRVYVSSRENLGMEEL 353

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDIIAENLRLAS 413
              ++ +L+        ++P +      L   +  L +       D G + +    RL S
Sbjct: 354 SLAVQQLLTGTLTTFDLTLPYNAGQ---LKNALYELGVIQEESYDDSGHECLTI--RLPS 408

Query: 414 VSLGKITGCVDVE--QLL 429
             L ++ G  ++E   +L
Sbjct: 409 DRLRQLLGQANLEPLDVL 426


>gi|332007113|gb|AED94496.1| GTP-binding protein [Arabidopsis thaliana]
          Length = 621

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 77/195 (39%), Gaps = 10/195 (5%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKND-ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
              ED       ++ +    L ++ +S  I + KL        ++ I+G  N GKS+L N
Sbjct: 282 PLLEDYTVEMLNDIGSQDDVLTDENLSDEIDESKL------PLQLAIVGKPNVGKSTLLN 335

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFL 294
           AL +++  +V    G TRD + +  + +G  V + DTAG     E D       I ++  
Sbjct: 336 ALLEEERVLVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLERTERDKGPASLSIMQSRK 395

Query: 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
            +  A +I L+ +     +         + I  ++           + +    G    E+
Sbjct: 396 SLMRAHVIALVLDAEEIIKAKCSMTHSEVVIARRAVEEGRGLVVIVNKMDRLRGRENSEM 455

Query: 355 INKIKSILSNKFKKL 369
             KIK  +  + + +
Sbjct: 456 YKKIKEAVPIEIQTV 470



 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 78/210 (37%), Gaps = 30/210 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIP--GTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++++G  N GKS+L+N L ++  A+V + P    TRD+      L      + D+AGI  
Sbjct: 120 VMLMGRPNVGKSALYNRLIRRREALVYNTPDDHVTRDIREGIAKLGDLRFNVLDSAGIET 179

Query: 280 TDDIVEKEGIKRTFLE--VENADLILLLKEINS----------KKEISFPKNIDFIFIGT 327
                   G         +      +L+ ++ +          K        I  I +  
Sbjct: 180 EVSSGTILGRTTAMTANVLARTQFAVLIIDVRAGLHPLDLEVGKWLRKHAPQIKPIVVMN 239

Query: 328 KSDLYSTYTE----------EYDHLISSFTGEGLEELINKIKSILSNKFKKL------PF 371
           KS+   +  E               IS+ TG G+  L   ++ +L +   ++        
Sbjct: 240 KSESIGSLDEVASEALALGFGEPIAISAETGLGMTTLYEVLRPLLEDYTVEMLNDIGSQD 299

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
            + + +     + ++   L++A + + + G
Sbjct: 300 DVLTDENLSDEIDESKLPLQLAIVGKPNVG 329


>gi|332294983|ref|YP_004436906.1| ribosome-associated GTPase EngA [Thermodesulfobium narugense DSM
           14796]
 gi|332178086|gb|AEE13775.1| ribosome-associated GTPase EngA [Thermodesulfobium narugense DSM
           14796]
          Length = 425

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 15/174 (8%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
           +R    +V+ G +N GKS+LFN L K+  ++V+ +PGTTRD         +   + + D 
Sbjct: 1   MRKLPIVVLAGRANVGKSTLFNRLLKQSYSMVSSVPGTTRDFHEGIFRYTDSTAITLVDL 60

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISF---PKNIDFIFIGT 327
            G+ E D + E    +++   +E +DLI+ + E     ++ +EI+      N   I +  
Sbjct: 61  PGVLEGDYLSELA-FEKSKKIIEKSDLIVQVVEARGLTSTDEEIALYLRKFNKPMILVVN 119

Query: 328 KS----DLYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           K     DL   Y+        IS++ G  + +L + I S ++ +  + P  I  
Sbjct: 120 KCEGRVDLSDFYSLGIGDIVEISAYHGLNVYQLEDLIFSKITGQKFEEPTPIVF 173



 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 101/281 (35%), Gaps = 36/281 (12%)

Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
                S  AFE  K  + +++ +  ++ +         +     E++    ++   +  +
Sbjct: 65  EGDYLSELAFEKSKKIIEKSDLIVQVVEARG-------LTSTDEEIALYLRKFNKPMILV 117

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILG 226
            +  E  +D S+   +      E+          +   I     G+           I G
Sbjct: 118 VNKCEGRVDLSDFYSLGIGDIVEISAYHGLNVYQLEDLIFSKITGQKFEEPTPIVFGIFG 177

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDI 283
             N GKSSL NA+ +++  IV+D  GTTR+V+       G    + D+AGI+     D  
Sbjct: 178 APNVGKSSLANAILEEERFIVSDFAGTTREVVAKSFRRLGKSWLLLDSAGIKRRKSYDKE 237

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS-- 333
           ++   + R+   ++ A + +L+ + +            +   +    I    K DL    
Sbjct: 238 LDGLSVSRSISAMK-APMGILVIDASRLVTHQDKRIASLMIERTGASIIFLNKKDLIPHS 296

Query: 334 -------------TYTEEYDHLISSFTGEGLEELINKIKSI 361
                         + +      S+ TGE +  ++  +K +
Sbjct: 297 SLGVVYNNVKSDLKFMDSPLIFGSALTGESVHLVLENLKDL 337


>gi|319943506|ref|ZP_08017788.1| GTP-binding protein Era [Lautropia mirabilis ATCC 51599]
 gi|319743321|gb|EFV95726.1| GTP-binding protein Era [Lautropia mirabilis ATCC 51599]
          Length = 309

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 76/204 (37%), Gaps = 23/204 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + ++I  D   TTR  +   L      + + D+ G +   
Sbjct: 23  VALVGRPNTGKSTLLNQLLGQMLSITADRAQTTRHRIQGVLSRPHAQLILVDSPGYQTQR 82

Query: 282 DIVEKEGIKRTFLEV-ENADLILLLKEI----NSKKEIS--FPKNIDFIFIGTKSDLYST 334
                + + RT   V + AD+++L+ E         EI      +   I    K D    
Sbjct: 83  INPLNKILNRTAQSVGQQADVVVLVTEAGRWRRQDDEILGWLKGDAPVIVALNKIDQLRN 142

Query: 335 YTE---------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             E                    I +  G+G+E L++ I+S L            + +  
Sbjct: 143 VNEVLPLIAQVHEAHPGLAAIVPICARNGQGIEALLDAIESNLPEGEAIYGEDELTDRPE 202

Query: 380 LYHLSQTVRYLEMASLNEKDCGLD 403
            +  ++ VR  ++  L  ++   +
Sbjct: 203 RFFAAEIVRE-KLFRLLGEELPYE 225


>gi|326779457|ref|ZP_08238722.1| GTP-binding protein Era [Streptomyces cf. griseus XylebKG-1]
 gi|326659790|gb|EGE44636.1| GTP-binding protein Era [Streptomyces cf. griseus XylebKG-1]
          Length = 321

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 85/226 (37%), Gaps = 28/226 (12%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
            S  +Q +     R G+    +G  NAGKS+L NAL  + VAI ++ P TTR  +   + 
Sbjct: 8   ESAAAQAETTSPHRAGF-ACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVH 66

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEI 314
            +   + + DT G+ +   ++ +             D+I      + K         KE+
Sbjct: 67  RDDAQLILVDTPGLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKYIVKEL 126

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +  +    I I TK+DL  +       L  S            +   L  ++ ++     
Sbjct: 127 AGIRKTPKIAIITKTDLVESKALAEQLLAVS-----------ALAEELGFEWAEIVPVSA 175

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCG-------LDIIAENLRLAS 413
              + +  L+  +  L   S      G       + ++AE +R A+
Sbjct: 176 VGDKQVDLLADLIAPLLPVSPPLYPEGDLTDEPEMVMVAELIREAA 221


>gi|309811062|ref|ZP_07704860.1| ribosome biogenesis GTPase Era [Dermacoccus sp. Ellin185]
 gi|308435026|gb|EFP58860.1| ribosome biogenesis GTPase Era [Dermacoccus sp. Ellin185]
          Length = 314

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 27/228 (11%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
                GEI R G+   ++G  NAGKS+L NAL    VAI +  P TTR  +   +     
Sbjct: 5   DTTHDGEIYRAGF-ACLVGRPNAGKSTLTNALVGDKVAITSSKPQTTRHTIRGIVTRPDG 63

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEIS 315
            + + DT G+ +   ++ +         + + D+I      + K             E+ 
Sbjct: 64  QIVLVDTPGLHKPRTLLGERLNDVVRETLLDVDVIGFCLPADQKIGPGDQFIAKDLAELQ 123

Query: 316 FPKNIDFIFIGTKSD------LYSTYTE-------EYDHLISSFTGEGLEELINKIKSIL 362
             +    + + TK+D      L     E             S+ +G+ ++++ N +   L
Sbjct: 124 RVRKRPVVALVTKTDTVDRERLAEHLIEVDRLGEWAAIVPCSAVSGKQVDDVANVLLGYL 183

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL 409
               +  P  + + +     +++ +R   +  + +E    L ++ E +
Sbjct: 184 PESPQLYPDDVLTDESDTVMIAELIREAALEGVRDELPHSLAVVVEEM 231


>gi|42527400|ref|NP_972498.1| GTP-binding protein Era [Treponema denticola ATCC 35405]
 gi|81411958|sp|Q73LG9|ERA_TREDE RecName: Full=GTPase Era
 gi|41817985|gb|AAS12409.1| GTP-binding protein Era [Treponema denticola ATCC 35405]
          Length = 294

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 90/209 (43%), Gaps = 26/209 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  +AGKS+  N  + + V+IV+ IP TTR+ +   ++     +   DT G  +++
Sbjct: 6   VTIIGRPSAGKSTFLNTASGEKVSIVSAIPQTTRNAIRGIVNTTKGQIVFIDTPGYHKSE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
             +  +  +     +E  D +L L +++ +          +  P     +    K+DL S
Sbjct: 66  KKLNLKLQEIAKTRLEEGDAVLYLIDLSREFGEEEKNICSLLIPLQNKTVIGLNKADLKS 125

Query: 334 T---------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +                 +E    IS+   EG+ E+++ +  +L       P  I + + 
Sbjct: 126 SKADLVKKELLSLLPDIPQERIFEISALKDEGINEILSLLIELLPEGEALYPEDIYTDQD 185

Query: 379 HLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
            ++ +++ +R  E A L+  ++    + A
Sbjct: 186 VVFRITEIIR--EQAILHTREEIPHALYA 212


>gi|302335754|ref|YP_003800961.1| GTP-binding protein Era [Olsenella uli DSM 7084]
 gi|301319594|gb|ADK68081.1| GTP-binding protein Era [Olsenella uli DSM 7084]
          Length = 312

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 83/194 (42%), Gaps = 23/194 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  + GKS+L NA  K  +AI + +  TTR  +   ++ EG  + I DT G
Sbjct: 18  RSGF-VALVGRPSVGKSTLLNACFKDKIAITSPVAQTTRRRMRATINAEGSQLVIVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +  D + KE  K    E+ + D +  L +             + ++       + + T
Sbjct: 77  LHKPKDALGKELNKVALGELADVDAVAFLVDATKPVGRGDEWVARHVAASHAPFKLLVVT 136

Query: 328 KSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K+DL S+                +   ++SS  G  ++  ++ + + L    +  P  + 
Sbjct: 137 KADLASSELITSQLAAASALADFDDALVVSSKEGFNVDGFVSLVSAHLPEGPRWFPEGMD 196

Query: 375 SHKRHLYHLSQTVR 388
           +       +++ +R
Sbjct: 197 TDMSDEDLVAEFIR 210


>gi|319783406|ref|YP_004142882.1| GTP-binding proten HflX [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169294|gb|ADV12832.1| GTP-binding proten HflX [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 463

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 88/217 (40%), Gaps = 32/217 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDV 244
             +++   I+ LK ++ +      L    R       + I+G++NAGKS+LFN L   DV
Sbjct: 196 DRRQLQEKIIKLKQELETVRRTRDLHRAKRRKVPFPVVAIVGYTNAGKSTLFNRLTGADV 255

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +  D+   T D     + L  G  + +SDT G             + T  EV  ADL+L
Sbjct: 256 -LAQDMLFATLDPTLRRVRLPHGTPIILSDTVGFISDLPTHLIAAFRATLEEVVEADLVL 314

Query: 304 LLKEINSKKEISFPKNIDFIF---------------IGTKSDLYST------------YT 336
            L++I+     +  ++++ I                +  K D                  
Sbjct: 315 HLRDISDPDTAAQAEDVERILADLGVDAGDAKRVIEVWNKIDRLDEGNRTRLLADGADAN 374

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           +     +S+ TGEG++ L   I++ ++ + + L  +I
Sbjct: 375 KAPPIAVSAVTGEGIDALKAIIETRMAGELEDLTVTI 411


>gi|304392069|ref|ZP_07374011.1| GTP-binding protein Era [Ahrensia sp. R2A130]
 gi|303296298|gb|EFL90656.1| GTP-binding protein Era [Ahrensia sp. R2A130]
          Length = 314

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 22/177 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N L    V+IV+    TTR V+    + +   +  +DT G
Sbjct: 21  RAGF-VALIGAPNAGKSTLINRLVGTKVSIVSHKVQTTRTVVRGIANRDNSQIIFADTPG 79

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIG--TK 328
           I +    +++  +   +   ++AD+I LL +       ++++ +   KN+    +    K
Sbjct: 80  IFQPRRRLDRAMVDAAWGGAKDADMICLLIDSERGIRGDAERILDKLKNVHLPKVLLMNK 139

Query: 329 SDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            D                    +   LIS+  G+G E+ ++ +K  L       P  
Sbjct: 140 IDRVQRDKLLALVDQANKAVNFDRTFLISAMNGDGCEDYMDYLKDELPEGPHLYPED 196


>gi|260220752|emb|CBA28631.1| GTP-binding protein era homolog [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 393

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 74/222 (33%), Gaps = 15/222 (6%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI 207
              SG   +   Q   ++ +    + A  + +  +  +   ++  +     L   +   +
Sbjct: 21  RTSSGRGHAANHQSKGQIMNAPKKVAARAESTSAKGQKGSQARAPVEVQENLDAMLEGLL 80

Query: 208 SQ-------GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
                    G  G   R G  + I+G  N GKS+L NAL  + ++I +    TTR  +T 
Sbjct: 81  KSTPKLATPGTDGAGQRCGL-VAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITG 139

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL-EVENADLILLLKE------INSKKE 313
                       DT G +        + + +     V + DL+L + E       + K  
Sbjct: 140 MRTEGQTQFVFVDTPGFQTIHGNALNKSLNKAVQGAVSDVDLVLFVVEAGSFTSADEKVL 199

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
               + I  + +  K D           L +        E+I
Sbjct: 200 KLLGEGIPVVLVANKLDNVKERAGLAPWLQAMQARAKFTEMI 241


>gi|297559688|ref|YP_003678662.1| GTP-binding protein Era [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844136|gb|ADH66156.1| GTP-binding protein Era [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 322

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 10/143 (6%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
              +   +      E  R+G+    +G  N GKS+L NAL  + VAI ++ P TTR  + 
Sbjct: 6   LEKLRLPLEMPSHPEGFRSGF-ACFVGRPNVGKSTLMNALVGQKVAITSNRPQTTRRTVR 64

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------- 311
             +      + I DT G+ +   ++ +         +   D+I      N          
Sbjct: 65  GIVHRPDAQLIIVDTPGLHKPRTLLGERLDSLVRSTLVEVDVIAFCLPANEPIGRGDTYI 124

Query: 312 -KEISFPKNIDFIFIGTKSDLYS 333
            KE++   N   + + TK+DL  
Sbjct: 125 AKELAEQTNTPVVALVTKTDLVD 147


>gi|256372048|ref|YP_003109872.1| GTP-binding protein Era [Acidimicrobium ferrooxidans DSM 10331]
 gi|317374861|sp|C7LZP1|ERA_ACIFD RecName: Full=GTPase Era
 gi|256008632|gb|ACU54199.1| GTP-binding protein Era [Acidimicrobium ferrooxidans DSM 10331]
          Length = 287

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 20/192 (10%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I R+G+ + ++G +N GKSSL NALA +   IV+  P TTR  + +   +    + + DT
Sbjct: 9   IRRSGF-VAVIGRTNVGKSSLVNALAGERATIVSRHPNTTRRSVRVISRVGDAELVLVDT 67

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEISFPKNIDFIFIGTKS 329
            GI    D +     +    E + AD  LL+ +        ++E++       + +  + 
Sbjct: 68  PGIAAAHDELSARLRRWVDDEWDGADRALLVVDAERGVGARERELASRLKPSDVAVVARI 127

Query: 330 D-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           D             L      EY  + S  TGEG+EEL + + S L          +   
Sbjct: 128 DRVRRARTLAVLAELAQVPLAEY-FVASVRTGEGIEELRSYLASSLPEGPALYEAGVALD 186

Query: 377 KRHLYHLSQTVR 388
                ++++ VR
Sbjct: 187 LPRATYVAEVVR 198


>gi|291562499|emb|CBL41315.1| GTP-binding protein HflX [butyrate-producing bacterium SS3/4]
          Length = 417

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 103/287 (35%), Gaps = 24/287 (8%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T   +    +  +      L G   + L+ +   I        + +V      E ++
Sbjct: 118 RAKTREGKIQVELAQLRYRAVRLVG-LRNSLSRLGGGIGTRGPGETKLEVDRRRIHERIS 176

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +     D+  H    +            I+G++NAGKS+L N L    + +  D    T
Sbjct: 177 QLKSELQDVERHRDVVRKQREQSGTLTAAIVGYTNAGKSTLLNKLTGAGI-LAEDKLFAT 235

Query: 255 RDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D  T  L L  G  V ++DT G          E  K T  E    D+IL + + ++ + 
Sbjct: 236 LDPTTRALTLPGGEKVLLTDTVGFIRKLPHHLVEAFKSTLEEARYCDVILHVVDCSNPQM 295

Query: 313 -----------EISFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLEELI 355
                           K+ + I +  K D           + +Y   +S+ TGEG+EEL+
Sbjct: 296 DMQMHVVYETLRRLDIKDKEIITVFNKVDRPDADTACRDMSADYKVKLSAKTGEGIEELL 355

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +    IL N+            R    +    +  ++ S   +D G+
Sbjct: 356 DLFAIILRNRRIYFEKVFAY--RDAGRIQTIRKSGQLLSEEYQDDGI 400


>gi|229817997|ref|ZP_04448279.1| hypothetical protein BIFANG_03284 [Bifidobacterium angulatum DSM
           20098]
 gi|229784601|gb|EEP20715.1| hypothetical protein BIFANG_03284 [Bifidobacterium angulatum DSM
           20098]
          Length = 547

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 87/238 (36%), Gaps = 23/238 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   I  LK  I+      + K G   R G   I ++G++NAGKSSL N L   
Sbjct: 290 EMDRRVIRTRIARLKKQIAQMAPAREVKRGSRRRYGLPTIAVVGYTNAGKSSLTNRLTGS 349

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G L    DT G          E  K T  EV  AD+I
Sbjct: 350 GELVENALFATLDTAVRRTKAGDGRLYAYVDTVGFVRRLPTQLVEAFKSTLEEVAEADVI 409

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + + +                +I     I  I    K+DL    T E         H+
Sbjct: 410 LHVVDASHPDPFSQIDAVNEILADIEGTAAIPRILAFNKADLCDETTLERLAALEPDAHI 469

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
           +S+++G+G+ +L   ++++L      +   +P     L    +   +++     +   
Sbjct: 470 VSAYSGDGVRQLREAVEALLPTPGVHVEALLPYSAGALLSQIREYGHVQDVQWLDDGV 527


>gi|71894402|ref|YP_278510.1| GTP-binding protein Era [Mycoplasma synoviae 53]
          Length = 283

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 71/168 (42%), Gaps = 14/168 (8%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  NAGKSSL N +   +++IVT +  TTR+ +T         +   DT GI +   +
Sbjct: 1   MVGRPNAGKSSLLNTILGYNLSIVTPVAQTTRNQITGVYTEGNLQIIFIDTPGIHKPKSL 60

Query: 284 VEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             +   K  F    + DL+L L   +    K ++   +      +  K  + +   +   
Sbjct: 61  FGEHLNKEAFDTFSSVDLVLFLSPADEEVLKGDLFILEK--LKNVKNKVAVITKLDKVNS 118

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
                      + L +K+ S++ + FK++  +   ++  +  L Q + 
Sbjct: 119 RP---------QLLKDKVNSLMEHDFKEIVATSIENEESIDSLVQLIE 157


>gi|255292983|dbj|BAH90080.1| GTP-binding protein [uncultured bacterium]
 gi|255293015|dbj|BAH90111.1| GTP-binding protein Era [uncultured bacterium]
          Length = 322

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 95/255 (37%), Gaps = 42/255 (16%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E  R+G+    +G  NAGKS+L NAL    +AI +  P TTR  +   +      + +
Sbjct: 16  RPEGFRSGF-ACFVGRPNAGKSTLTNALVGSKIAITSSKPQTTRHAIRGIVHRADAQMVL 74

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNID 321
            DT G+ +   ++ +             D+I +    + +          +    P    
Sbjct: 75  IDTPGLHKPRTLLGERLNDLVHETWSEVDVIGVCLPSDQRIGPGDTYLVSQIAELPHRPK 134

Query: 322 FIFIGTKSDLYS------------------TYTEEYDHLISSFTGEGLEELINKIKSILS 363
            + + TKSDL S                      E+   +S+ +GE ++E+ + + S+L 
Sbjct: 135 LVALATKSDLVSGERMRDHLVSIQALEEKLGIRWEHIVPVSAVSGEQVDEVADVLVSLLP 194

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN---LRLASVSLGKIT 420
                 P    + +     +++ +R   +  + ++     I+      LR          
Sbjct: 195 EGPAYYPDGEITDEPTETLVAELIRECALEGVRDELPHSIIVTIEEMGLRE--------- 245

Query: 421 GCVDVEQLLDIIFSK 435
           G  + + LLD IF+ 
Sbjct: 246 GRPEDKPLLD-IFAN 259


>gi|239814410|ref|YP_002943320.1| GTP-binding protein Era [Variovorax paradoxus S110]
 gi|239800987|gb|ACS18054.1| GTP-binding protein Era [Variovorax paradoxus S110]
          Length = 321

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T    L        DT G +   
Sbjct: 29  IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGMRTLGATQFVFVDTPGFQTLH 88

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSD 330
                + + +T    V + DLIL + E       + +      K I  + +  K D
Sbjct: 89  ANALNKSLNKTVQGAVGDVDLILFVVEAGSFTPADERVLKLLGKGIPTVLLANKLD 144


>gi|237746715|ref|ZP_04577195.1| GTP-binding protein Era [Oxalobacter formigenes HOxBLS]
 gi|229378066|gb|EEO28157.1| GTP-binding protein Era [Oxalobacter formigenes HOxBLS]
          Length = 299

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 24/177 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L    V+I +    TTR  +      +       DT G +   
Sbjct: 14  IAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRIMGIQTDDDAQFIYIDTPGFQTRY 73

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYST 334
           +    + + RT    +  AD+IL + +       + +     P+N+  I +  K+D    
Sbjct: 74  NNALNKNLNRTVRDTLSTADVILFVVDAGVYGQADQQVLDLIPENVPTILVVNKTDKVKE 133

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR-HLYHLSQTVRYL 390
                             ELI   + + + +       + + +R  L  L + +R+L
Sbjct: 134 KA----------------ELIPFAEKLAALRDFAAIVPVSARQRFQLNRLEEEIRHL 174


>gi|332296079|ref|YP_004438002.1| GTP-binding protein Era-like-protein [Thermodesulfobium narugense
           DSM 14796]
 gi|332179182|gb|AEE14871.1| GTP-binding protein Era-like-protein [Thermodesulfobium narugense
           DSM 14796]
          Length = 287

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 83/190 (43%), Gaps = 18/190 (9%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ ++ +G +N GK+SL N L  + + IV+D P TTR   +     E Y +   D+ 
Sbjct: 1   MKSGF-VIFVGKTNVGKTSLINCLLGEKIGIVSDKPQTTRFRTSFIESTEEYQIIYVDSP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLK-------EINSKKEISFPKNIDFIFIGTK 328
           G+    +++ +   K+ F  +++ ++I+ +        + + + +           +  K
Sbjct: 60  GVHNVKNLLHERLNKKIFDSLDSFEIIVHVVNPTTVFDDFDIEIQKKIFNKRPRYLVVNK 119

Query: 329 SDLYSTYTEEYDHLISSF----------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
            DL       +D  I+SF             G+ +L N I S LS+     P  + +   
Sbjct: 120 IDLVDVSNLNFDKSITSFYDRFFYTSTRKFIGINDLKNAIISDLSDGPMWYPKDMRTDMS 179

Query: 379 HLYHLSQTVR 388
               +S+ +R
Sbjct: 180 KEMLVSEIIR 189


>gi|270159972|ref|ZP_06188628.1| GTP-binding protein Era [Legionella longbeachae D-4968]
 gi|289165284|ref|YP_003455422.1| membrane-associated, 16S rRNA-binding GTPase [Legionella
           longbeachae NSW150]
 gi|269988311|gb|EEZ94566.1| GTP-binding protein Era [Legionella longbeachae D-4968]
 gi|288858457|emb|CBJ12335.1| membrane-associated, 16S rRNA-binding GTPase [Legionella
           longbeachae NSW150]
          Length = 294

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 72/189 (38%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N + ++ V+I +  P TTR  +        Y     DT GI + +
Sbjct: 8   IALVGRPNVGKSTLLNCILQQKVSITSKKPQTTRHSILGICTEGDYQFVYVDTPGIHQGN 67

Query: 282 DIVEKEGIKRT-FLEVENADLILLLKEINSKKE-----ISFPKNIDFI--FIGTKS---- 329
                  + +T    + + D+I  L +    KE     +S  K        +  K     
Sbjct: 68  KKAMNRMMNKTAISVLRDVDVIAFLVDGTHWKEEDEYVLSLVKQAKVPSLLVVNKVDKID 127

Query: 330 ----------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      + + +       IS+ TG  ++EL  K+++ L       P    + +  
Sbjct: 128 DKDKLLPWIEQMSAKHEFAAIIPISAKTGMQVDELQAKLQAYLPEGPHLFPDDQLTDRPT 187

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 188 KFLCAELIR 196


>gi|319763844|ref|YP_004127781.1| gtp-binding protein era [Alicycliphilus denitrificans BC]
 gi|330823892|ref|YP_004387195.1| GTP-binding protein Era [Alicycliphilus denitrificans K601]
 gi|317118405|gb|ADV00894.1| GTP-binding protein Era [Alicycliphilus denitrificans BC]
 gi|329309264|gb|AEB83679.1| GTP-binding protein Era [Alicycliphilus denitrificans K601]
          Length = 313

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 7/116 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T             DT G +   
Sbjct: 23  IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTRGQTQFVFVDTPGFQTRH 82

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSD 330
                + + +T +  + + DLIL + E       ++K    F   I  + I  K D
Sbjct: 83  STALNKSLNKTVMGAIGDVDLILFVVEAGSFTLADAKVLSLFKPGIPTLLIANKLD 138


>gi|152986375|ref|YP_001350991.1| GTP-binding proten HflX [Pseudomonas aeruginosa PA7]
 gi|150961533|gb|ABR83558.1| GTP-binding proten HflX [Pseudomonas aeruginosa PA7]
          Length = 433

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 111/311 (35%), Gaps = 25/311 (8%)

Query: 115 RRAFENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
            RAFE   +D            + T E + ++ +  +    + L   W   L   +  I 
Sbjct: 94  ERAFECRVLDRTGLILDIFAQRARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIG 152

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
                  + +      +  +  I      + S   Q + G    +   + ++G++NAGKS
Sbjct: 153 LRGPGETQLETDRRLLRVRIRQIKQRLEKVRSQREQARRGRKRADIPAVSLVGYTNAGKS 212

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRT 292
           +LFNAL   +V    +    T D     L L+    V ++DT G          E  + T
Sbjct: 213 TLFNALTSSEV-YAANQLFATLDPTLRRLQLDDLGPVVLADTVGFIRHLPHKLVEAFRAT 271

Query: 293 FLEVENADLILLLKEINSKKEISFPKNI------------DFIFIGTKSDLYSTY----- 335
             E  NADL+L + + +  +  +  + +              + +  K DL  +      
Sbjct: 272 LEESSNADLLLHVIDAHEPERDAQIEQVLAVLGEIGANELPMLEVYNKVDLLPSVEPHIQ 331

Query: 336 ----TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                +     +S+ TGEGL+ L   I  +L          +P     L      +  ++
Sbjct: 332 RDDAGKPVRVWLSAQTGEGLDLLRQAIAELLGEDLFVGTLRLPQRLGRLRAQLFELGAVQ 391

Query: 392 MASLNEKDCGL 402
             + +E+ C L
Sbjct: 392 SEAHDEEGCTL 402


>gi|146329627|ref|YP_001209600.1| GTP-binding protein Era [Dichelobacter nodosus VCS1703A]
 gi|146233097|gb|ABQ14075.1| GTP-binding protein Era [Dichelobacter nodosus VCS1703A]
          Length = 299

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 81/205 (39%), Gaps = 23/205 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           I ++G  N GKS+L N L  + +AI +  P TTR  L      +   +   DT GI R+ 
Sbjct: 8   IAVVGRPNVGKSTLINHLLGQKIAITSRKPQTTRQALLGIYSEDDVQMVFVDTPGIHRDG 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK-NIDFIFIGTKSDLYS 333
              + ++  +  +  + + D+IL + E+      +++      +  +  + +  K D   
Sbjct: 68  KKAINRQMNRAAWQSMHDVDVILHVSEVKRWEEDDARIAAEIAQMKVPAVHVVNKIDRLK 127

Query: 334 TYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              + +                 +S+   + LEEL+  +  +L  +      S  +    
Sbjct: 128 DKADLFPELQARQSIANWAAIVPVSAARSQNLEELLRVLAPLLPEQPFLYDQSQVTTASM 187

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI 404
            +  ++ VR  ++     ++   ++
Sbjct: 188 RFLAAEIVRE-KLFRYVHQEVPYEL 211


>gi|113461382|ref|YP_719451.1| GTP-binding protein Era [Haemophilus somnus 129PT]
 gi|122945400|sp|Q0I4Z4|ERA_HAES1 RecName: Full=GTPase Era
 gi|112823425|gb|ABI25514.1| GTP-binding protein era [Haemophilus somnus 129PT]
          Length = 300

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGVYQAVYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----------NIDFIFIG 326
              + +   +     + + DLI+ + +    N   E+   K                 I 
Sbjct: 71  KRAINRLMNRAASSAIGDVDLIIFVVDGTHWNDDDEMVLNKLRRAKAPVVLAINKVDNIK 130

Query: 327 TKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K +L    T+       +    IS+  G  +  L   +++ L       P    + +  
Sbjct: 131 NKDELLPFITDVSQKLEFKEIIPISAQRGNNIHNLEKIVRTSLRKGVHHFPEDYVTDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|170719011|ref|YP_001784171.1| GTP-binding protein Era [Haemophilus somnus 2336]
 gi|189037650|sp|B0USS2|ERA_HAES2 RecName: Full=GTPase Era
 gi|168827140|gb|ACA32511.1| GTP-binding protein Era [Haemophilus somnus 2336]
          Length = 304

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 15  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGVYQAVYVDTPGLHIEE 74

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----------NIDFIFIG 326
              + +   +     + + DLI+ + +    N   E+   K                 I 
Sbjct: 75  KRAINRLMNRAASSAIGDVDLIIFVVDGTHWNDDDEMVLNKLRRAKAPVVLAINKVDNIK 134

Query: 327 TKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K +L    T+       +    IS+  G  +  L   +++ L       P    + +  
Sbjct: 135 NKDELLPFITDVSQKLEFKEIIPISAQRGNNIHNLEKIVRTSLRKGVHHFPEDYVTDRSQ 194

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 195 RFMASEIIR 203


>gi|282861802|ref|ZP_06270866.1| GTP-binding protein Era [Streptomyces sp. ACTE]
 gi|282563618|gb|EFB69156.1| GTP-binding protein Era [Streptomyces sp. ACTE]
          Length = 321

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 84/226 (37%), Gaps = 28/226 (12%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
            +   Q +     R G+    +G  NAGKS+L NAL    VAI ++ P TTR  +   + 
Sbjct: 8   EAAARQAENTAPHRAGF-ACFVGRPNAGKSTLTNALVGSKVAITSNRPQTTRHTVRGIVH 66

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEI 314
                + + DT G+ +   ++ +             D+I      + K         KE+
Sbjct: 67  RSDAQLILVDTPGLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKFIVKEL 126

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +  +    I I TK+DL  + T     L  S           ++   L  ++ ++     
Sbjct: 127 AGIRKTPKIAIITKTDLVDSKTLAEQLLAVS-----------RLGEELGFEWAQIVPVSA 175

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCG-------LDIIAENLRLAS 413
              R +  L+  +  L   S      G       L ++AE +R A+
Sbjct: 176 VQDRQVDLLADLIAPLLPESPPLYPEGDLTDEPELVMVAELIREAA 221


>gi|325681534|ref|ZP_08161059.1| ribosome biogenesis GTPase Era [Ruminococcus albus 8]
 gi|324106801|gb|EGC01092.1| ribosome biogenesis GTPase Era [Ruminococcus albus 8]
          Length = 298

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 81/201 (40%), Gaps = 22/201 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I G +NAGKSSL NAL  + +A V+D P TTR  +T  L          DT G+ +
Sbjct: 5   IFVTIAGRANAGKSSLLNALVGEKIAAVSDKPQTTRTKITGVLTKGETQFVFMDTPGMHK 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN---------IDFIF 324
             + + +  +      +   D+I+L+ +       N K  I   K               
Sbjct: 65  AKNKLSEHMVNTVNETIAGVDMIILMCDCTKKISDNEKSLIQSFKGGRSKVILALNKIDL 124

Query: 325 IGTKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +  K D+ +   E       E    IS    +GL+ +++ ++   +      P    + +
Sbjct: 125 LDNKEDVIAKLAEYSALYDFEEVVPISVAENDGLDIIMDILEKNAAEGPHFFPDDKFTDQ 184

Query: 378 RHLYHLSQTVRYLEMASLNEK 398
                +++ +R   + +LN++
Sbjct: 185 PEKVIMAEMIREKALKNLNDE 205


>gi|148273200|ref|YP_001222761.1| putative GTP-binding protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831130|emb|CAN02082.1| putative GTP-binding protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 521

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 126/363 (34%), Gaps = 46/363 (12%)

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG-KIDLLEA 128
           P P ++ G   AE         +  ++  +     +         RRA E+  K+ +++ 
Sbjct: 145 PDPSTYFGRGKAEE--------LRALVAAVGADTVIADTELAPSQRRALEDVVKVKVIDR 196

Query: 129 ESLADLISS------ETEMQRRLSMEGMSGELSSLYGQW-----IDKLTHIRSFIEADLD 177
            ++   I S      E + Q  L+       L      W           +         
Sbjct: 197 TAVILDIFSQHAKSREGKAQVELAQLQY---LLPRLRGWGDSMSRQAGGQVGGAGAGMGS 253

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSS 234
               E       + +   +  L+  I++       K     RN    + I+G++NAGKSS
Sbjct: 254 RGPGETKIELDRRRINTRMARLRKQIAAMKPARDTKRANRDRNSVPSVAIVGYTNAGKSS 313

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N + K  V +   +  T    +      +G L  ++DT G          E  + T  
Sbjct: 314 LLNRVTKAGVLVENALFATLDATVRKTETDQGQLYTLADTVGFVRNLPHQLVEAFRSTLE 373

Query: 295 EVENADLILLLKEINSKKEIS------------FPKNIDFIFIGTKSDLYSTYTE----- 337
           E+ ++D+++ + + +     +               +I  I +  KSDL S         
Sbjct: 374 ELADSDVLVHVVDASHPDPAAQLATVHEVIAEVDASSIPEIVVFNKSDLASDGDRVVLRG 433

Query: 338 --EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH-LSQTVRYLEMAS 394
                  +S+ TGEG+EEL  +I  +L     ++   +P     +   L    + LE A 
Sbjct: 434 LAPQGVFVSARTGEGVEELRRRIAELLPQPTIEVDLLVPFEHGEIVAMLHDGAKVLETAY 493

Query: 395 LNE 397
           + E
Sbjct: 494 VEE 496


>gi|467091|gb|AAA17274.1| hflX [Mycobacterium leprae]
          Length = 518

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 90/242 (37%), Gaps = 31/242 (12%)

Query: 188 SSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV 244
             + +   +  L+ DI +       +    + +    I I+G++NAGKSS+ NAL    V
Sbjct: 256 DRRRIRERMAKLRRDIGAMKQARDTQRSRRLHSDIPSIAIVGYTNAGKSSVLNALTGAWV 315

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T +  T   + + G     +DT G          E  + T  EV +ADL+L
Sbjct: 316 -LVQDALFVTLEPTTRHAEFDNGQPFVFTDTVGFVRHLPTQLVEAFRSTLEEVVDADLLL 374

Query: 304 LLKE---------INSKKEISFPKNIDFI----------FIGTKSDLYST-------YTE 337
            + +         IN+ +++ F    D             +  K D  S        +  
Sbjct: 375 HVVDGSDANPLAQINAVRQVIFEVISDHQDGGVEVPHELLVVNKIDAASALMLAKLRHGL 434

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
                IS+ TG+G++ L  +I  ++      +   IP  +  L         ++ A  N 
Sbjct: 435 PGAVFISARTGDGIDVLRRRIAELVVATDTAVDVVIPYDRGDLVARLHANGRVQQAEHNS 494

Query: 398 KD 399
             
Sbjct: 495 NG 496


>gi|67906566|gb|AAY82672.1| predicted GTP-binding protein Era [uncultured bacterium
           MedeBAC49C08]
          Length = 300

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 23/176 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           I I+G +N GKS+L N + ++ +AI +  P TTR+ +    + E       DT G+    
Sbjct: 7   ISIVGKTNVGKSTLLNKILERKLAITSRKPQTTRNRILGAWNHEDMQAIFLDTPGVHTGH 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFPK-----NIDFIFIGTKSD--- 330
              + K   +     ++N DLIL + + +   ++E    K      I  I +  K D   
Sbjct: 67  KKALNKYMNQVAMHALKNVDLILFIVDRDRWGEEEERIIKQLNGSKIPVILVINKIDRIK 126

Query: 331 -----------LYSTYTEEYDHLISSFTGEGL-EELINKIKSILSNKFKKLPFSIP 374
                      L + +  E    IS+       +EL   I + L +          
Sbjct: 127 NKEDLLPTIEKLNAKFDFEEIIPISALKNINAPKELYEVINNYLPHGQPHYEEDFV 182


>gi|21226612|ref|NP_632534.1| GTP-binding protein [Methanosarcina mazei Go1]
 gi|20904890|gb|AAM30206.1| GTP-binding protein [Methanosarcina mazei Go1]
          Length = 355

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 90/240 (37%), Gaps = 36/240 (15%)

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK--LGE 214
            Y     +        E    F    D ++   +++   I  +++++ S     +     
Sbjct: 61  KYEIPRARAIVSLVKKEERAGFMGLGDYEDAYEQDLKKRIARIEDELESAGKDDESLRAF 120

Query: 215 IIRNGYK-IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLV 269
             R G+  + + G++NAGKS+LFNA+  + V     + T +  TTR      LDL G   
Sbjct: 121 RHRKGFSLVALAGYTNAGKSTLFNAIVNESVEARNMLFTTLVPTTR-----ALDLGGRKA 175

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----------- 318
            ++DT G  E       +  K T  E+  +DLILL+ +   K E    K           
Sbjct: 176 LLTDTVGFIEELPHWLVDAFKSTLDEIFLSDLILLVVDAGEKPETILQKLSTSHDTLWDR 235

Query: 319 --NIDFIFIGTKSDLYSTYTEEY-----------DHLISSFTGEGLEELINKIKSILSNK 365
              +  I +  K DL      E               +S+    G++EL ++I   L   
Sbjct: 236 IQGVPIITVLNKIDLLEEAQLEALMEEIGYMAPNPVFVSAKKKIGMQELKDEIIKHLPAW 295


>gi|221194745|ref|ZP_03567802.1| GTP-binding protein HflX [Atopobium rimae ATCC 49626]
 gi|221185649|gb|EEE18039.1| GTP-binding protein HflX [Atopobium rimae ATCC 49626]
          Length = 429

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 103/272 (37%), Gaps = 26/272 (9%)

Query: 136 SSETEMQR-RLSMEGMSGELSSLYGQWIDKLTH-IRSFIEADLDFSEEEDVQNFSSKEVL 193
            ++T   R ++ +  +   L  L G W   +    R  I +   F + E       + + 
Sbjct: 123 HAKTREGRLQVQLAQLQYVLPRLRGMWSHLVGEQTRGGIGSR--FGQGESQLEIDRRLIR 180

Query: 194 NDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           + I  L++++ +   + ++   +R     + + + G++NAGKS+L N L    V    ++
Sbjct: 181 DKISMLQHELRNLEKRREVQSKLRWDSGIFSVSLAGYTNAGKSTLLNQLTNASVYAKDEL 240

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T           EG  + ++DT G  +       E  K T  E + ADLILL+ + + 
Sbjct: 241 FATLDPTTRTITLEEGRKITLTDTVGFIQKLPTTLIESFKSTLAEAQAADLILLVVDASD 300

Query: 311 K---KEISF---------PKNIDFIFIGTKSDLYSTYTEEY-------DHLISSFTGEGL 351
           K   KEI                 + +  K DL  T               IS+    GL
Sbjct: 301 KNFDKEIEVVTSILNDIKVSAHKKLLVFNKIDLLDTNNLAKMRTLYPDAVFISAQKAMGL 360

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
             L+  I  I     K L   IP  +  L H+
Sbjct: 361 RGLLYTIAHIAGEDDKTLHVCIPFDQGFLIHM 392


>gi|239979360|ref|ZP_04701884.1| GTP-binding protein Era [Streptomyces albus J1074]
 gi|291451235|ref|ZP_06590625.1| GTP-binding protein Era [Streptomyces albus J1074]
 gi|291354184|gb|EFE81086.1| GTP-binding protein Era [Streptomyces albus J1074]
          Length = 313

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 83/221 (37%), Gaps = 29/221 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+    +G  NAGKS+L NAL  + VAI ++ P TTR  +   +      + + DT G
Sbjct: 13  RAGF-ACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPDAQLILVDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++ +             D+I      + K         KEI+  K    + + T
Sbjct: 72  LHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDRFIAKEIAGIKKTPKVAVVT 131

Query: 328 KSDL------------YSTYTEEYDHLI------SSFTGEGLEELINKIKSILSNKFKKL 369
           K+DL                  E           S+  G+ +E L + +  ++       
Sbjct: 132 KTDLVDGKQLAEQLIAVDQLAAELGFEWAEIIPVSAVKGDQVELLTDLLAPLMPEGPALY 191

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL 409
           P    + +     +++ +R   +  + +E    + ++ E +
Sbjct: 192 PEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEEM 232


>gi|239941036|ref|ZP_04692973.1| GTP-binding protein Era [Streptomyces roseosporus NRRL 15998]
 gi|239987515|ref|ZP_04708179.1| GTP-binding protein Era [Streptomyces roseosporus NRRL 11379]
          Length = 324

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 10/140 (7%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
            S   Q +     R G+    +G  NAGKS+L NAL  + VAI ++ P TTR  +   + 
Sbjct: 11  ESAAQQAETTSTHRAGF-ACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVH 69

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEI 314
            +   + + DT G+ +   ++ +             D+I      + K         KE+
Sbjct: 70  RDDAQLILVDTPGLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKYIVKEL 129

Query: 315 SFPKNIDFIFIGTKSDLYST 334
           +  K    I I TK+DL  +
Sbjct: 130 AGIKKTPKIAIITKTDLVES 149


>gi|291444476|ref|ZP_06583866.1| GTP-binding protein Era [Streptomyces roseosporus NRRL 15998]
 gi|291347423|gb|EFE74327.1| GTP-binding protein Era [Streptomyces roseosporus NRRL 15998]
          Length = 321

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 10/140 (7%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
            S   Q +     R G+    +G  NAGKS+L NAL  + VAI ++ P TTR  +   + 
Sbjct: 8   ESAAQQAETTSTHRAGF-ACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVH 66

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEI 314
            +   + + DT G+ +   ++ +             D+I      + K         KE+
Sbjct: 67  RDDAQLILVDTPGLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKYIVKEL 126

Query: 315 SFPKNIDFIFIGTKSDLYST 334
           +  K    I I TK+DL  +
Sbjct: 127 AGIKKTPKIAIITKTDLVES 146


>gi|225351437|ref|ZP_03742460.1| hypothetical protein BIFPSEUDO_03032 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157781|gb|EEG71064.1| hypothetical protein BIFPSEUDO_03032 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 496

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 82/213 (38%), Gaps = 23/213 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + + I  L+  I         K G   R G   + ++G++NAGKSSL N L   
Sbjct: 239 EMDRRVIRSRIAKLRKQIEQMAPARDVKRGARRRFGLPTVAVVGYTNAGKSSLTNRLTGS 298

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G      DT G          E  K T  EV  ADLI
Sbjct: 299 AELVENALFATLDTAVRRARAKDGRQYAYVDTVGFVRRLPTQLIEAFKSTLEEVSEADLI 358

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEYD-------HL 342
           + + + +                +I   + I  I +  K+D     T E         ++
Sbjct: 359 VHVVDGSHPDPFSQIDAVDDVLSDIDGVETIPTIIVFNKADRMDEATRERIEALMPEAYI 418

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +S+F+GEG++EL  +++S+L      +   +P 
Sbjct: 419 VSAFSGEGVDELRMQVESMLPTPNVHVEALLPY 451


>gi|237807624|ref|YP_002892064.1| GTP-binding protein Era [Tolumonas auensis DSM 9187]
 gi|237499885|gb|ACQ92478.1| GTP-binding protein Era [Tolumonas auensis DSM 9187]
          Length = 300

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNKLLGQKVSITSRKPQTTRHRILGIDTQGAYQTIFVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + ++++ + +        E+   K    +   +    K D+  
Sbjct: 71  KRAINRLMNRAATSSLGDVEMVVFVVDGTHWTDDDEMVLNKLRHMHCPVVLAVNKVDVIK 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  H               IS+  G  +E++    K +L       P    + +  
Sbjct: 131 DKEILLPHLQMLAQKGNFAEILPISAEKGTNVEKIREMAKRLLPEGEHYFPEDYITDRSS 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|212709954|ref|ZP_03318082.1| hypothetical protein PROVALCAL_01005 [Providencia alcalifaciens DSM
           30120]
 gi|212687363|gb|EEB46891.1| hypothetical protein PROVALCAL_01005 [Providencia alcalifaciens DSM
           30120]
          Length = 426

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 108/293 (36%), Gaps = 26/293 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ + 
Sbjct: 114 RARTHEGKLQVELAQLRHLSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDKIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+      +   + ++G++NAGKSSLFN +   DV    D    T
Sbjct: 173 QILSRLGRVEKQREQGRQSRSKADIPTVSLVGYTNAGKSSLFNRMTSADV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D++    V ++DT G             K T  E   A+L+L + +      
Sbjct: 232 LDPTLRRIDVDDVGTVVLADTVGFIRHLPHDLVAAFKATLQETREANLLLHVIDAVDVRL 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +NS  E      I  + +  K D+   +    D           +S+ TGEG+ 
Sbjct: 292 DENIQAVNSVLEEIDANEIPTLLVMNKVDMLDDFVPRIDRDEDNKPVRVWVSAQTGEGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDI 404
            L+  +   LS +   +   +P ++  L      ++ +E     E    GL++
Sbjct: 352 LLLQALTERLSGEIAHVELRLPPNEGRLRSRFYQLQSIEREWQEEDGTIGLEV 404


>gi|15827476|ref|NP_301739.1| ATP/GTP-binding protein [Mycobacterium leprae TN]
 gi|221229953|ref|YP_002503369.1| putative ATP/GTP-binding protein [Mycobacterium leprae Br4923]
 gi|13093026|emb|CAC31378.1| possible ATP/GTP-binding protein [Mycobacterium leprae]
 gi|219933060|emb|CAR71092.1| possible ATP/GTP-binding protein [Mycobacterium leprae Br4923]
          Length = 488

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 90/242 (37%), Gaps = 31/242 (12%)

Query: 188 SSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV 244
             + +   +  L+ DI +       +    + +    I I+G++NAGKSS+ NAL    V
Sbjct: 226 DRRRIRERMAKLRRDIGAMKQARDTQRSRRLHSDIPSIAIVGYTNAGKSSVLNALTGAWV 285

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T +  T   + + G     +DT G          E  + T  EV +ADL+L
Sbjct: 286 -LVQDALFVTLEPTTRHAEFDNGQPFVFTDTVGFVRHLPTQLVEAFRSTLEEVVDADLLL 344

Query: 304 LLKE---------INSKKEISFPKNIDFI----------FIGTKSDLYST-------YTE 337
            + +         IN+ +++ F    D             +  K D  S        +  
Sbjct: 345 HVVDGSDANPLAQINAVRQVIFEVISDHQDGGVEVPHELLVVNKIDAASALMLAKLRHGL 404

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
                IS+ TG+G++ L  +I  ++      +   IP  +  L         ++ A  N 
Sbjct: 405 PGAVFISARTGDGIDVLRRRIAELVVATDTAVDVVIPYDRGDLVARLHANGRVQQAEHNS 464

Query: 398 KD 399
             
Sbjct: 465 NG 466


>gi|302390344|ref|YP_003826165.1| GTP-binding proten HflX [Thermosediminibacter oceani DSM 16646]
 gi|302200972|gb|ADL08542.1| GTP-binding proten HflX [Thermosediminibacter oceani DSM 16646]
          Length = 417

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 100/300 (33%), Gaps = 33/300 (11%)

Query: 148 EGMSGELSSLYGQWIDKL-------THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
             + G++     Q    L         +             E       + +   I  LK
Sbjct: 117 RSLEGKIQVELAQLQHMLPRLTGKGVELSREGGGIGTRGPGETKLETDRRHIRRRITHLK 176

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
            ++       KL    R    I ++G++NAGKS+L NAL    V+    +  T       
Sbjct: 177 KELERIRKNRKLLRSSRKYPVISLVGYTNAGKSTLMNALTGAGVSSNDRLFDTLDPTTRA 236

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFP 317
            L  +G  V +SDT G          E  K T  EV+ ADL++ + + +S K   EIS  
Sbjct: 237 LLLPDGRRVLLSDTVGFIRKLPHEIVEAFKATLEEVKEADLLIHVVDASSPKADEEISTV 296

Query: 318 K---------NIDFIFIGTKSDLYS----TYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           K         NI  I    K D  +       EE    IS+  G  L+ L  KI  +L  
Sbjct: 297 KSVLKEIGAENIPTILALNKIDRVNHRELITGEENVVEISALCGTNLDILREKICQLLPQ 356

Query: 365 KFKKL------PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
             +         +     + H   L +   + +     E      +    LR     L +
Sbjct: 357 TREHALLCIPYEYGFLLDEIHETSLVEREEFKQDGIEIEGKIDTIL----LRRIKKYLSE 412


>gi|121996843|ref|YP_001001630.1| GTP-binding protein Era [Halorhodospira halophila SL1]
 gi|121588248|gb|ABM60828.1| GTP-binding protein Era [Halorhodospira halophila SL1]
          Length = 305

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
             ++G  N GKS+L NAL  + V+IVT  P TTR  +   L+     + + DT G+ ++ 
Sbjct: 18  CALVGRPNVGKSTLLNALLGEKVSIVTRKPQTTRHRILGVLNRPDAQMVLVDTPGMHQSA 77

Query: 282 DIVEKEGIKR-TFLEVENADLILLLKEINSKKE 313
                  + R     +E+ D+++ +      KE
Sbjct: 78  KRALNRQLNRAAHGALEDIDVVVFVVRGTEWKE 110


>gi|187931573|ref|YP_001891557.1| GTP-binding protein Era [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187712482|gb|ACD30779.1| GTP-binding protein Era [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 297

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 21/164 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N + K  V+I +  P TTR  +T    L        DT GI  + 
Sbjct: 7   ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSD--- 330
              + K   K      ++ D+IL + E+    E+            I    +  K D   
Sbjct: 67  PKAINKFMNKAATTMFKDIDVILFVVEMGKWTELEDNIVEKLKHSEIPIFLVVNKVDKKK 126

Query: 331 ------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSN 364
                    +  E+         S+  G  + EL ++I+ +L  
Sbjct: 127 SLEAAMFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLLPE 170


>gi|188586871|ref|YP_001918416.1| GTP-binding proten HflX [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351558|gb|ACB85828.1| GTP-binding proten HflX [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 435

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 103/272 (37%), Gaps = 26/272 (9%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            ++ ++     +E + +I     ++     + +      N   + ++G++NAGKS+L + 
Sbjct: 167 EQKLEIDRRHLREQIQEIRRKLAEVRKRREENRQYRKKHNLPVVSLVGYTNAGKSTLLST 226

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L    V    ++  T    L       G    +SDT G             + T  EVE 
Sbjct: 227 LTGSKVTAKDELFNTLDPKLADMSMSSGSKALLSDTVGFINKLPHHLVAAFRATLEEVEE 286

Query: 299 ADLILLLKEINSK---KEISF---------PKNIDFIFIGTKSDLYSTYTE------EYD 340
           ADLIL + + +S    +EI            +    I +  K+DL              +
Sbjct: 287 ADLILHVIDASSPRMYEEIEAVEEVLSSLDLEGTPIIKVYNKTDLLQESEPLMESGFPKE 346

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
             IS+   +GL  L   I+  L + + +  + IP H+  L    +     E+  +  K+ 
Sbjct: 347 VAISALKKDGLHRLRKAIQRYLESSWVRKEYIIPYHREDLKA--RLYEVGEVLDIEYKET 404

Query: 401 GLDIIA-----ENLRLASVSLGKITGCVDVEQ 427
            +++ A     E+ RL    L +I G     +
Sbjct: 405 VMEVYARVPPHEDQRL-EKDLAEIKGGNSRHE 435


>gi|114327657|ref|YP_744814.1| GTP-binding protein Era [Granulibacter bethesdensis CGDNIH1]
 gi|114315831|gb|ABI61891.1| GTP-binding protein era [Granulibacter bethesdensis CGDNIH1]
          Length = 335

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 74/200 (37%), Gaps = 24/200 (12%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-----EGYLVKISDTAGI 277
            +LG  NAGKS+L NAL    V+IV+    TTR  +           E   + + DT GI
Sbjct: 44  ALLGAPNAGKSTLVNALTGAKVSIVSPKAQTTRFRVLGIAMHQTEAGETSQILMVDTPGI 103

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL 331
                 +++  +   +  V++ADL LL+ +  +      +  I    N     +  K DL
Sbjct: 104 FTPRRRLDRAMVAAAWTGVQDADLGLLMVDARAGLTEDVRAIIERLGNRRTWLVLNKVDL 163

Query: 332 YSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
               +              E    IS+   +GL+ L+  +   +       P    +   
Sbjct: 164 VPAPSLLPLAQALSDLAKFEETFFISAAKRDGLDMLLTALAQAMPPGPHLYPDDDLTDLP 223

Query: 379 HLYHLSQTVRYLEMASLNEK 398
                ++ VR       +E+
Sbjct: 224 DRLLAAEIVREQIFLQTHEE 243


>gi|84501097|ref|ZP_00999332.1| GTP-binding protein HflX [Oceanicola batsensis HTCC2597]
 gi|84391164|gb|EAQ03582.1| GTP-binding protein HflX [Oceanicola batsensis HTCC2597]
          Length = 424

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 86/224 (38%), Gaps = 28/224 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   +  L+  +   +   +L    R       + ++G++NAGKS+LFN L   
Sbjct: 167 EADRRAIDEQLTRLRRQLEKVVRTRELHRAARARVPFPIVALVGYTNAGKSTLFNRLTGA 226

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +V +  D+   T D     + L   G  V +SDT G             + T  EV  AD
Sbjct: 227 EV-LAKDMLFATLDPTMRRVRLPNNGPEVILSDTVGFISDLPTQLVAAFRATLEEVLEAD 285

Query: 301 LILLLKEINSKK-------------EISFPKNIDFIFIGTKSD---------LYSTYTEE 338
           LIL +++I+  +             ++  P+ +  + +  K D         L      +
Sbjct: 286 LILHIRDISHPEAEEQKADVEDILSDLGLPEEVPVLEVWNKVDRLPPEDAGALARRAERD 345

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
              +IS+ TG GL+ L++ ++  L         ++   +     
Sbjct: 346 GTFVISAVTGAGLDPLLDAVERTLDQGSVTEELTLGFDEGRRRA 389


>gi|294139710|ref|YP_003555688.1| GTP-binding protein Era [Shewanella violacea DSS12]
 gi|293326179|dbj|BAJ00910.1| GTP-binding protein Era [Shewanella violacea DSS12]
          Length = 335

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 70/206 (33%), Gaps = 25/206 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +     +    V   DT G+  E 
Sbjct: 44  VAIVGRPNVGKSTLLNKLLGQKISITSKKPQTTRHRIMGIHTVAERQVVFIDTPGLHMEE 103

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK------NIDFIFIGTKSD- 330
              + +   +     +    L++ + +        ++   K          +    K D 
Sbjct: 104 KRAINRLMNRAAASSLAEVSLVVFVVDGMTWTEDDDLVLRKLQSRDDGRKTVLAVNKVDN 163

Query: 331 -------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                        L   +  +    IS+  G  ++ +++     L       P    + +
Sbjct: 164 IKNKEELFPYLEALSKKFPFDEILPISATKGTNVQRILDMSIESLPESPHFFPEDYVTDR 223

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLD 403
              +  S+ VR   M  L + +   D
Sbjct: 224 SQKFMASEIVREKLMRFLGD-ELPYD 248


>gi|332292384|ref|YP_004430993.1| GTP-binding protein Era [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170470|gb|AEE19725.1| GTP-binding protein Era [Krokinobacter diaphorus 4H-3-7-5]
          Length = 294

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   ++ E + + +SDT GI +  
Sbjct: 8   VNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQMLLSDTPGIIKPA 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPK----NIDFIFIGTKSDL--- 331
             ++   +       E+AD++L + E+  K+   E  F K     I  + +  K D    
Sbjct: 68  YELQASMMDFVKSAFEDADVLLYIVELGEKELKDEAFFNKIRGSKIPVLLLINKIDKGNE 127

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                                IS+    G+ ++ N+I  +L       P    + K   +
Sbjct: 128 DTLAEALKLWSEKVPNAEVFAISALESFGVPQVFNRIIELLPESPAFYPKDQLTDKPERF 187

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 188 FVNEIIR 194


>gi|315655233|ref|ZP_07908134.1| GTP-binding protein [Mobiluncus curtisii ATCC 51333]
 gi|315490488|gb|EFU80112.1| GTP-binding protein [Mobiluncus curtisii ATCC 51333]
          Length = 525

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 77/207 (37%), Gaps = 23/207 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + + + +  L+  + +     +     R       + I+G++NAGKSSL N LA  
Sbjct: 251 ELDRRRIRSRMARLRRTLKALAPTREAKRASRKAGGIPAVAIVGYTNAGKSSLLNRLAGA 310

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           ++ +   +  T    +      EG    ++DT G          E  + T  E   ADLI
Sbjct: 311 NLLVHDALFATLDPSVRRAHTPEGREYTLADTVGFVRRLPTELVEAFRSTLEETAMADLI 370

Query: 303 LLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + + ++   ++               + +  + +  K D  S              + 
Sbjct: 371 LHVVDGSNPDPMAQVAAVDATLELVEGIEEVPVMMVVNKIDQASAPALALLRHSLPEAYY 430

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL 369
           +S+ TGEG+E L   I   L    +++
Sbjct: 431 VSALTGEGIEALQQAIAGRLPWPGQRV 457


>gi|307719724|ref|YP_003875256.1| hypothetical protein STHERM_c20490 [Spirochaeta thermophila DSM
           6192]
 gi|306533449|gb|ADN02983.1| hypothetical protein STHERM_c20490 [Spirochaeta thermophila DSM
           6192]
          Length = 408

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 102/241 (42%), Gaps = 27/241 (11%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLF 236
           E E       + +L+ +  ++ ++ +            +  G  ++ ++G++NAGKSSLF
Sbjct: 155 EGERQIELDRRMILSRLARIRREMEAIERHQTTTRSRRLEAGIPRVSLVGYTNAGKSSLF 214

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLE 295
             L  + V I  D P  T D  T    + G+  V +SDT G  +       +    T  E
Sbjct: 215 TRLTGQAVRI-QDRPFVTLDTTTRTCLIPGWGRVVVSDTVGFIQHLPHTLVDAFHATLEE 273

Query: 296 VENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYT-----EE 338
           V +A L+L + +++S   +                +I  I +  K+D  S +      + 
Sbjct: 274 VRDAHLLLEVVDLSSPNLLLHLSTTEEVLTEIGAHHIPRIRVYNKADRSSPHPLLPPSDH 333

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            + L+S+ TGEG+E L++ I   +   +      +P H+     L ++   L  A +  +
Sbjct: 334 PEILVSAKTGEGIEGLLSLIVREMERHYPIETLELPYHR-----LGESHEVLSRAVIIHQ 388

Query: 399 D 399
           +
Sbjct: 389 E 389


>gi|54293917|ref|YP_126332.1| GTP-binding protein Era [Legionella pneumophila str. Lens]
 gi|53753749|emb|CAH15207.1| hypothetical protein lpl0973 [Legionella pneumophila str. Lens]
          Length = 311

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 73/189 (38%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N + ++ ++I +  P TTR  +      + +     DT GI + +
Sbjct: 24  IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEDEFQFVYVDTPGIHQGN 83

Query: 282 DIVEKEGIKRT-FLEVENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSD--- 330
                  + +T    + + D+I  L +    K+       +     +  I +  K D   
Sbjct: 84  AKAINRMMNKTAISVLRDVDVIAFLVDGTHWKDEDEYVLNLIKQAKVPCILVVNKVDKIT 143

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      +   Y       +S+ TG  ++EL  K+K+ L       P    + +  
Sbjct: 144 DKTQLLPWIEQISQRYQFAAIIPLSAKTGLQVDELEGKLKTYLPEGPHLFPDDQFTDRST 203

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 204 KFLCAELLR 212


>gi|288941441|ref|YP_003443681.1| GTP-binding protein Era [Allochromatium vinosum DSM 180]
 gi|288896813|gb|ADC62649.1| GTP-binding protein Era [Allochromatium vinosum DSM 180]
          Length = 307

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 23/203 (11%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           ++     + R G  + I+G  N GKS+L N +  + +AI +    TTR  +       G 
Sbjct: 7   NESSTSVVSRCG-TVAIIGRPNVGKSTLLNRILGQKLAITSHKAQTTRHAILGIKTRAGG 65

Query: 268 LVKISDTAGIRETDDIVEKEGIKR-TFLEVENADLILLLKEINSKKEIS-------FPKN 319
            +   DT GI E         + R     V + DL LL+ E     E             
Sbjct: 66  QILFVDTPGIHERGGSALNRYLNRAARAAVADTDLALLVVEAGRWTEEDAKALEAIAAAG 125

Query: 320 IDFIFIGTKSD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           +  I +  K D              L   +   +  L+S+  G+ +E L   I   L   
Sbjct: 126 VPVIAVVNKVDRIADKSTLLPYLQALGERHAFRHVVLVSATKGDQVETLERLIVESLPEG 185

Query: 366 FKKLPFSIPSHKRHLYHLSQTVR 388
               P    + +   +  ++ VR
Sbjct: 186 EPVFPEDQLTDRSERFFAAELVR 208


>gi|168334214|ref|ZP_02692417.1| ATP/GTP-binding protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 411

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 13/213 (6%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++   + ++ ++ +     ++  H    +   +      + I+G++NAGKS+L N L   
Sbjct: 158 ELDKRNIRKRMDILEKELAEVKRHREIIRKKRVKEEVRVVSIVGYTNAGKSTLLNVLTGS 217

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D+ +   +  T        +   G  V+  DT G  +       +    T  EV  +D+I
Sbjct: 218 DIYVEKQLFATLDTTTRKAILPSGTEVRFVDTVGFIKKLPHQLIKAFYSTLEEVRYSDII 277

Query: 303 LLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEEYDH-LISSFTGE 349
           + L + +++   S              + I  + +  K D    Y EE ++  IS+ TG 
Sbjct: 278 IHLIDASNEHNESHIQVVEETLKNLKIEGIPVLKVYNKVDNEQVYIEELENLTISAKTGL 337

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
            L++L  KI+ IL ++ KK    +P  K  +  
Sbjct: 338 NLDKLQLKIEEILYDEMKKFTAVVPYTKNDIVA 370


>gi|304317028|ref|YP_003852173.1| GTP-binding proten HflX [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778530|gb|ADL69089.1| GTP-binding proten HflX [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 414

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 87/234 (37%), Gaps = 16/234 (6%)

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
                 + L+ +   I        + +      +E +  I     D+  H    +     
Sbjct: 137 RLQGLGNDLSRLGGGIGTRGPGETKLETDRRYIRERIKTIERKLEDLKRHRELLRERRRK 196

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTA 275
                + I+G++NAGKS+L NAL    V  V D    T D     LDL  G    + DT 
Sbjct: 197 NEVPVVAIVGYTNAGKSTLMNALTDSSV-YVEDKLFATLDPTARKLDLPSGREAILIDTV 255

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPKN---------IDFI 323
           G          E  K T  E + AD++L + +I SK    +I   +N            I
Sbjct: 256 GFIRKLPHDLVEAFKSTLEESKYADVLLHVIDITSKDIKHKIEVVENVLRDLEAIDKPII 315

Query: 324 FIGTKSDLYST--YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            +  KSDL       ++ +  IS+    G++EL+  I ++       L F  P 
Sbjct: 316 KVYNKSDLLEQMPVNKDNEIYISAKEMLGIDELLKAIDNVAYKDLFVLDFYFPY 369


>gi|10176988|dbj|BAB10220.1| GTP-binding protein-like [Arabidopsis thaliana]
          Length = 514

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 78/191 (40%), Gaps = 11/191 (5%)

Query: 184 VQNFSSKEVLNDILFLKND--ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           +++++ + +      +  D  +S  I + KL        ++ I+G  N GKS+L NAL +
Sbjct: 164 LEDYTVEMLNGSQDDVLTDENLSDEIDESKL------PLQLAIVGKPNVGKSTLLNALLE 217

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFLEVEN 298
           ++  +V    G TRD + +  + +G  V + DTAG     E D       I ++   +  
Sbjct: 218 EERVLVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLERTERDKGPASLSIMQSRKSLMR 277

Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           A +I L+ +     +         + I  ++           + +    G    E+  KI
Sbjct: 278 AHVIALVLDAEEIIKAKCSMTHSEVVIARRAVEEGRGLVVIVNKMDRLRGRENSEMYKKI 337

Query: 359 KSILSNKFKKL 369
           K  +  + + +
Sbjct: 338 KEAVPIEIQTV 348



 Score = 56.4 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 77/207 (37%), Gaps = 28/207 (13%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIP--GTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +++G  N GKS+L+N L ++  A+V + P    TRD+      L      + D+AGI   
Sbjct: 1   MLMGRPNVGKSALYNRLIRRREALVYNTPDDHVTRDIREGIAKLGDLRFNVLDSAGIETE 60

Query: 281 DDIVEKEGIKRTFLE--VENADLILLLKEINS----------KKEISFPKNIDFIFIGTK 328
                  G         +      +L+ ++ +          K        I  I +  K
Sbjct: 61  VSSGTILGRTTAMTANVLARTQFAVLIIDVRAGLHPLDLEVGKWLRKHAPQIKPIVVMNK 120

Query: 329 SDLYSTYTE----------EYDHLISSFTGEGLEELINKIKSILSNKFKKL----PFSIP 374
           S+   +  E               IS+ TG G+  L   ++ +L +   ++       + 
Sbjct: 121 SESIGSLDEVASEALALGFGEPIAISAETGLGMTTLYEVLRPLLEDYTVEMLNGSQDDVL 180

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCG 401
           + +     + ++   L++A + + + G
Sbjct: 181 TDENLSDEIDESKLPLQLAIVGKPNVG 207


>gi|239944771|ref|ZP_04696708.1| putative ATP/GTP-binding protein [Streptomyces roseosporus NRRL
           15998]
 gi|239991235|ref|ZP_04711899.1| putative ATP/GTP-binding protein [Streptomyces roseosporus NRRL
           11379]
 gi|291448234|ref|ZP_06587624.1| ATP/GTP-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|291351181|gb|EFE78085.1| ATP/GTP-binding protein [Streptomyces roseosporus NRRL 15998]
          Length = 506

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 105/294 (35%), Gaps = 25/294 (8%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q +  +  + G   SL  Q     +     +        + +      +E +  +  
Sbjct: 204 SLAQMQYMLPRLRGWGQSLSRQMGGGGSSGGGGMATRGPGETKIETDRRRIREKMAKMRR 263

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
              ++ +     +          + I G++NAGKSSL N L    V +   +  T    +
Sbjct: 264 EIAEMKTGREIKRQERKRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 323

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEIS 315
                  G +  ++DT G          E  + T  EV  +DLIL + + +    +++++
Sbjct: 324 RRAETPSGRIYTLADTVGFVRHLPHHLVEAFRSTMEEVGESDLILHVVDGSHPVPEEQLA 383

Query: 316 FPK---------NIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGEGLEELINKIK 359
             +         N+  I +  K+D             E+Y   +S+ TGEG++EL+  I 
Sbjct: 384 AVREVIRDVGAVNVREIVVINKADAADPLVLQRLLRNEKYAITVSARTGEGIDELLALID 443

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQT------VRYLEMASLNEKDCGLDIIAE 407
           + L     ++   +P  +  L              +    +L +     ++ AE
Sbjct: 444 AELPRPSVEIEVLVPYIQGALVSRVHAEGEVLSEEHTAEGTLLKAQVHEELAAE 497


>gi|256396187|ref|YP_003117751.1| GTP-binding proten HflX [Catenulispora acidiphila DSM 44928]
 gi|256362413|gb|ACU75910.1| GTP-binding proten HflX [Catenulispora acidiphila DSM 44928]
          Length = 502

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 101/275 (36%), Gaps = 25/275 (9%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF-SEEEDVQNFSSKEVL 193
            +++     ++++  M   +      W   L+         L      E       + + 
Sbjct: 192 HAKSREGKAQVALAQMQ-YMLPRLRGWGQSLSRQMGGGRGGLATRGPGETKIETDRRRIR 250

Query: 194 NDILFLKNDISSHISQ--GKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             +  L+ +I+        K  E  R     +V+ G++NAGKSS+ N L    V +   +
Sbjct: 251 ERMAKLRREINDMSKGRVTKRAERRRGSVPSVVLAGYTNAGKSSILNRLTGAGVLVENAL 310

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T    +       G    +SDT G          E  + T  EV  +DL+L + + + 
Sbjct: 311 FATLDPTVRRTETASGRAYTLSDTVGFVRHLPHQLVEAFRSTLEEVGESDLVLHVVDASD 370

Query: 311 KK---EISFPK---------NIDFIFIGTKSDLYSTYT-------EEYDHLISSFTGEGL 351
           +    +IS  +         ++  + +  K+DL            E +  ++S+ TGEG+
Sbjct: 371 EDPEGQISAVRAVFADMGAGDVKELMVLNKADLADPEVLARLLRHEPHSIIVSARTGEGI 430

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           + L++ I+  L     +L   +P  +  L      
Sbjct: 431 DHLLSAIERDLPRPGVELEALVPYDRGDLVARIHA 465


>gi|89053015|ref|YP_508466.1| GTP-binding protein Era [Jannaschia sp. CCS1]
 gi|88862564|gb|ABD53441.1| GTP-binding protein Era [Jannaschia sp. CCS1]
          Length = 312

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 24/172 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 14  RAGF-IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQLVFVDTPG 72

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEI-----SFPKNIDFIFIG 326
           +      +++  +K  +    +AD+++LL E      +  + I         +       
Sbjct: 73  LFRPRRRLDRAMVKAAWTGAADADVVVLLIEAHRGLTDGVQAILDGLKERTGDRKVALAI 132

Query: 327 TKS-------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            K              DL + Y  +  ++IS+  G G++EL   + + +   
Sbjct: 133 NKIDRVDAPVLLKLTEDLNAAYPFDETYMISAEKGHGVKELRTWLAAEVPEG 184


>gi|317056494|ref|YP_004104961.1| GTP-binding protein Era [Ruminococcus albus 7]
 gi|315448763|gb|ADU22327.1| GTP-binding protein Era [Ruminococcus albus 7]
          Length = 298

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 97/257 (37%), Gaps = 48/257 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I G +NAGKSSL NAL  + +A V+D P TTR  +T  L          DT G+ +
Sbjct: 5   IFVTIAGRANAGKSSLLNALVGEKIAAVSDKPQTTRTKITGVLTKGETQFVFMDTPGMHK 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFI--GTKSDL 331
             + + +  +      +   D+I+ + +       N K  I   K      I    K DL
Sbjct: 65  AKNKLSEHMVNTVNETITGVDMIIFMCDCTKKISDNEKSLIESFKGGKSKVILALNKIDL 124

Query: 332 ----------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                      S Y+  YD      IS    +GL+ +++ ++   +      P    + +
Sbjct: 125 LDNKEDVIVKLSEYSALYDFAEVVPISVVGNDGLDIIMDILEKNAAEGPHYFPDDKFTDQ 184

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV--EQLLD---II 432
                +++ +R   + +LN++      +          LG+     D   E +LD    I
Sbjct: 185 PEKVIMAEMIREKALRNLNDEVPHGVAVTIE------QLGE---REDRNGEAILDITATI 235

Query: 433 FSKFC---------IGK 440
              FC         IGK
Sbjct: 236 ---FCERESHKGIIIGK 249


>gi|213961788|ref|ZP_03390054.1| GTP-binding protein Era [Capnocytophaga sputigena Capno]
 gi|213955577|gb|EEB66893.1| GTP-binding protein Era [Capnocytophaga sputigena Capno]
          Length = 293

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 7/124 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   +  + + V  SDT GI +  
Sbjct: 7   VNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRIFGIVSGDDFQVVFSDTPGIIKPS 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPK----NIDFIFIGTKSDLYST 334
             ++   +       E+AD+++ + EI  K+   E+ F +     +  + +  K D    
Sbjct: 67  YALQASMMDFVKSAFEDADILIYMVEIGEKELKDEVFFNRINKLEVPVLLLINKVDTSDQ 126

Query: 335 YTEE 338
            T E
Sbjct: 127 STLE 130


>gi|302817191|ref|XP_002990272.1| hypothetical protein SELMODRAFT_131329 [Selaginella moellendorffii]
 gi|300141981|gb|EFJ08687.1| hypothetical protein SELMODRAFT_131329 [Selaginella moellendorffii]
          Length = 462

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 109/295 (36%), Gaps = 29/295 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ +  +  +L  L   W          ++      ++ +V     +   + 
Sbjct: 157 AATREAALQVVLAQLEYQLPRLTKLWTHLERQAGGMVKGM--GEKQIEVDKRILRTKASS 214

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +      +  H  Q +          I ++G++NAGKS+L N L+   V +  D    T 
Sbjct: 215 LRKNLESVRDHRQQYRNRRASVPIPVISLVGYTNAGKSTLLNKLSNAGV-LAEDKLFATL 273

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------- 307
           D +T  + L  G     +DT G  +          + T  E+ ++ LIL + +       
Sbjct: 274 DPITRRVQLPNGKECLFTDTVGFIQKLPTQLVAAFRATLEEISDSSLILHVVDRSHSMAP 333

Query: 308 -----INSKKEISFPKNIDFIFIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELI 355
                ++        ++I  + +  K D       L +   ++    +S+ TGEG++E  
Sbjct: 334 EQTKAVDEVLAELDVQHIPRLSVWNKIDKAEDPDALRAEAKQQGAICVSALTGEGIQEFF 393

Query: 356 NKIKSILSNKFKKLPFSIPSHK------RHLYHLSQTVRYLEMASLNEKDCGLDI 404
           + +++ L +   ++   +P  K       H   + +   Y +  +L      L +
Sbjct: 394 DAVETKLKDLLVRVEAIVPYSKGDLVDMIHRRGVVEHEEYTDSGTLVRAHVPLAL 448


>gi|170288692|ref|YP_001738930.1| ferrous iron transport protein B [Thermotoga sp. RQ2]
 gi|170176195|gb|ACB09247.1| ferrous iron transport protein B [Thermotoga sp. RQ2]
          Length = 669

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 19/168 (11%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  EI +   K+ + G  N GK+SLFNAL       V + PG T +        +GY + 
Sbjct: 8   RRSEISQKIVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTIN 66

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------------I 314
           + D  G          E I R +L   +ADL++++ +  + ++                +
Sbjct: 67  LIDLPGTYSLGYSSIDEKIARDYLLKGDADLVIVVADSVNPEQSLYLLLEILEMEKKVIL 126

Query: 315 SFPKNIDFIFIGTKSDLYS--TYTEEYDHLISSFTGEGLEELINKIKS 360
           +     +   IG K D Y    +        SS TGEGLEEL  KI  
Sbjct: 127 AMTAIDEAKKIGIKIDRYELQKHLGIPVVFTSSVTGEGLEELREKIVE 174


>gi|220931954|ref|YP_002508862.1| small GTP-binding protein [Halothermothrix orenii H 168]
 gi|219993264|gb|ACL69867.1| small GTP-binding protein [Halothermothrix orenii H 168]
          Length = 395

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 111/294 (37%), Gaps = 33/294 (11%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           E+++Q  L+       L        ++L+ +   I        + ++     ++ +    
Sbjct: 101 ESKLQVELAQLQY---LLPRLTGKGEELSRLGGGIGTRGPGETKLEIDRRRIEKRIYK-- 155

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            LK ++ +     ++    R    + ++G++NAGKS+L N L   +   V D    T D 
Sbjct: 156 -LKQELKNVKKNRQIQRKSRKDPVVALVGYTNAGKSTLLNTLTNAN-TEVADKLFATLDS 213

Query: 258 LTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
               L L  G  + ISDT G  +          + T  E++ AD++L + + +  +  + 
Sbjct: 214 TLRRLTLPFGKQIIISDTVGFIKKLPHQLVASFQATLEEIKEADILLHVVDSSEPELENH 273

Query: 317 PK------------NIDFIFIGTKSDLYST-------YTEEYDHLISSFTGEGLEELINK 357
            K            + + I +  K D                   +S+ +G+ ++ L+ K
Sbjct: 274 IKVVNAVLKELGVFHKEKIMVLNKIDRLEKGQLLDLGIKYPRAVPVSALSGKCIDNLMGK 333

Query: 358 IKSILSNKFKKLPFSIPSHK------RHLYHLSQTVRYLEMASLNEKDCGLDII 405
           I  I+ N+   +   IP H+       H   L    +Y+  + + +     ++ 
Sbjct: 334 ICEIMLNEMTTVHLKIPYHEAGWINTIHHQGLVLKEKYVNDSIIIKATIPTELA 387


>gi|146341376|ref|YP_001206424.1| GTP-binding protein Era [Bradyrhizobium sp. ORS278]
 gi|189037292|sp|A4YWC7|ERA_BRASO RecName: Full=GTPase Era
 gi|146194182|emb|CAL78203.1| GTP-binding protein (era) [Bradyrhizobium sp. ORS278]
          Length = 307

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 76/193 (39%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL    V IV+    TTR ++   +      + + DT G
Sbjct: 13  RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEGQSQIILVDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPK----NIDFIFIGTK 328
           I      +++  +   +    +ADL+ +L +     + + +    K      + I +  K
Sbjct: 72  IFSPKRRLDRAMVTTAWSGAHDADLVCVLLDAKKGLDDEAQAIIDKAASVAHEKILVVNK 131

Query: 329 SDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL                       +IS+ +G+G+++L   +  ++       P    S
Sbjct: 132 VDLVPREKLLALVAAANEKLAFARTFMISALSGDGVDDLRRALAEMVPPGPFHYPEDQMS 191

Query: 376 HKRHLYHLSQTVR 388
                +  ++  R
Sbjct: 192 DAPMRHLAAEITR 204


>gi|86140695|ref|ZP_01059254.1| putative GTP-binding protein [Leeuwenhoekiella blandensis MED217]
 gi|85832637|gb|EAQ51086.1| putative GTP-binding protein [Leeuwenhoekiella blandensis MED217]
          Length = 309

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 78/187 (41%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA+  + ++I+T    TTR  +   ++ + +    SDT GI +  
Sbjct: 23  VNIIGNPNVGKSTLMNAIVGERLSIITSKAQTTRHRILGIVNGDDFQAIFSDTPGIIKPA 82

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPK----NIDFIFIGTKSDL--- 331
             ++   +       E+AD+++ + E+  K+   E  F K    +I  + +  K D    
Sbjct: 83  YELQASMMDFVKSAFEDADVLIYMVELGEKELKDEDFFNKIRNTDIPVLLLINKIDKGNE 142

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                                IS+    G+ ++ ++I   L       P    + K   +
Sbjct: 143 ELLEASRTHWQEKVPNAEIFAISALEDFGVSQVFDRILDALPVSPPFYPKDALTDKPERF 202

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 203 FVNEIIR 209


>gi|152965471|ref|YP_001361255.1| small GTP-binding protein [Kineococcus radiotolerans SRS30216]
 gi|151359988|gb|ABS02991.1| small GTP-binding protein [Kineococcus radiotolerans SRS30216]
          Length = 530

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 82/212 (38%), Gaps = 22/212 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + + + +  L+ +I    +       +R+      + I G++NAGKSSL N L   
Sbjct: 271 ELDRRRIRSRMAKLRREIKGMGTARVEKRSLRHARAVPAVSIAGYTNAGKSSLLNRLTGA 330

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      EG    ++DT G   +      E  + T  EV  +D++
Sbjct: 331 GVLVENALFATLDPTVRRAQTPEGRPYTLADTVGFVRSLPHQLVEAFRSTLEEVAESDVV 390

Query: 303 LLLKEINSKK------------EISFPKNIDFIFIGTKSDLYST-------YTEEYDHLI 343
           L + + +                    +++  +    K+D+            E+    +
Sbjct: 391 LHVVDGSHPDPEGQLAAVRGVLADVDAQDVPELVAINKADVADPEVVDRLLRREKNAVAV 450

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           S+ TGEG+EEL+ +I  +L     ++   +P 
Sbjct: 451 SARTGEGIEELLERIARMLPVPDVEMEVCVPY 482


>gi|330467062|ref|YP_004404805.1| GTP-binding protein Der [Verrucosispora maris AB-18-032]
 gi|328810033|gb|AEB44205.1| GTP-binding protein Der [Verrucosispora maris AB-18-032]
          Length = 467

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 31/221 (14%)

Query: 198 FLKNDISSHISQGKL--GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L + I + + +         R   ++ ++G  N GKSSL N  + ++ A+V  + GTT 
Sbjct: 175 DLLDAIMAALPEAPKIVENRPRGPRRVALVGRPNVGKSSLLNRFSGEERAVVDSVAGTTV 234

Query: 256 DVLTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLLKEINSK- 311
           D +   + + G    + DTAG+R+        E     RT   +E A++ ++L + +   
Sbjct: 235 DPVDSLVTIGGETWHLVDTAGLRKRVGKASGTEYYASLRTAAAIEAAEVAVVLLDSSEPI 294

Query: 312 -------KEISFPKNIDFIFIGTKSDLYST-----YTEEYDH-----------LISSFTG 348
                    +        +    K DL          +E D             +S+ TG
Sbjct: 295 SEQDQRILSMVTEAGRAMVIAFNKWDLVDADRRYYLDKEIDRELRRIPWAIRLNLSAMTG 354

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
             +++L   +   L +   ++P +  +    L  L Q   +
Sbjct: 355 RAVDKLAAALHRALDSWETRIPTAQLNA--WLTALVQATPH 393



 Score = 70.3 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 62/173 (35%), Gaps = 31/173 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  +  A+V D+PG TRD +  D    G    + DT G     
Sbjct: 27  VAVVGRPNVGKSTLVNRIIGRRQAVVEDVPGVTRDRIPYDAQWSGRSFTVVDTGGWEPDA 86

Query: 282 D--------------IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT 327
                                +      V + D+        +  ++        I +  
Sbjct: 87  KDRAAAIAAQAETAVATADVVVFVVDATVGSTDV------DEAAVKMLRRSAKPVILVAN 140

Query: 328 KSD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
           K+D          L+S    E  H IS+  G G  +L++ I + L    K + 
Sbjct: 141 KADNANIELEATSLWSLGLGE-PHPISALHGRGSGDLLDAIMAALPEAPKIVE 192


>gi|315185968|gb|EFU19732.1| GTP-binding proten HflX [Spirochaeta thermophila DSM 6578]
          Length = 408

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 27/241 (11%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLF 236
           E E       + +L+ +  ++ ++ +            +  G  ++ ++G++NAGKSSLF
Sbjct: 155 EGERQIELDRRMILSRLARIRREMEAIERHQTTTRSRRLEAGIPRVSLVGYTNAGKSSLF 214

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLE 295
             L  + V I  D P  T D  T    + G+  V +SDT G  +       +    T  E
Sbjct: 215 TRLTGQAVRI-QDRPFVTLDTTTRTCLIPGWGRVVVSDTVGFIQHLPHTLVDAFHATLEE 273

Query: 296 VENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYT-----EE 338
           V +A L+L + +++S   +                +I  I +  K D  S +        
Sbjct: 274 VRDAHLLLEVVDLSSPNLLLHLSTTEEVLTEIGAHHIPRIRVYNKVDRSSPHPLLPPSNH 333

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            + L+S+ TGEG+E L++ I   +   +      +P H+     L ++   L  A++  +
Sbjct: 334 PEILVSAKTGEGIEGLLSLIVREMERHYPIETLELPYHR-----LGESHEVLSRAAIIHQ 388

Query: 399 D 399
           +
Sbjct: 389 E 389


>gi|317152019|ref|YP_004120067.1| small GTP-binding protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942270|gb|ADU61321.1| small GTP-binding protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 411

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 18/167 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  NAGKSSL NAL  ++ AIV+D PGTT D +    +L     V   DTAG+ 
Sbjct: 11  LVIALAGRRNAGKSSLLNALTGQETAIVSDTPGTTTDPVAKHYELLPLGPVTFYDTAGLD 70

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFPKNIDFIFIG--TKSDL 331
           +T D+      K T   +  +D+ +++        + +  +   K +    I    K+DL
Sbjct: 71  DTGDLGGLRM-KATRKVLYRSDVAVVVVGEEGVTAHERAILDMVKGLSIPCIVAFNKTDL 129

Query: 332 YSTYTEEYDHLIS---------SFTGEGLEELINKIKSILSNKFKKL 369
            +  +EE     S         + TG G +EL   I      +F++ 
Sbjct: 130 RTPASEELALCRSLGAPCLTVCARTGAGADELKRAIIDAAPLEFRQE 176


>gi|52841177|ref|YP_094976.1| GTP-binding protein Era [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52628288|gb|AAU27029.1| GTP-binding protein Era [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 311

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 72/189 (38%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N + ++ ++I +  P TTR  +        +     DT GI + +
Sbjct: 24  IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEGEFQFVYVDTPGIHQGN 83

Query: 282 DIVEKEGIKRT-FLEVENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSD--- 330
                  + +T    + + D+I  L +    K+       +     +  I +  K D   
Sbjct: 84  AKAINRMMNKTAISVLRDVDVIAFLVDGTHWKDEDEYVLNLIKQAKVPCILVVNKVDKIT 143

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      +   Y       +S+ TG  ++EL  K+K+ L       P    + +  
Sbjct: 144 DKTQLLPWIEQISQRYQFAAIIPLSAKTGLQVDELEGKLKNYLPEGPHLFPDDQFTDRST 203

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 204 KFLCAELLR 212


>gi|317483526|ref|ZP_07942510.1| GTP-binding protein HflX [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689523|ref|YP_004209257.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F]
 gi|322691480|ref|YP_004221050.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|316915016|gb|EFV36454.1| GTP-binding protein HflX [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456336|dbj|BAJ66958.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460859|dbj|BAJ71479.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F]
          Length = 501

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 80/213 (37%), Gaps = 23/213 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   I  L+  I       + K G   R G   + ++G++NAGKSSL N L   
Sbjct: 244 EMDRRVIRTRIARLRRQIREMAPAREVKRGSRRRFGLPTVAVVGYTNAGKSSLTNRLTGS 303

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G      DT G          E  K T  EV  AD+I
Sbjct: 304 AELVENALFATLDTAVRRAKTRDGRAYAYVDTVGFVRRLPTQLVEAFKSTLEEVAEADVI 363

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + + +                +I    +I  I +  K+D     T E          +
Sbjct: 364 LHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRILVFNKADQADEATRERLAALQPDAFI 423

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +S++TGEGL+EL   ++S+L      +   +P 
Sbjct: 424 VSAYTGEGLDELRTAVESLLPVPHVHVNALLPY 456


>gi|294815506|ref|ZP_06774149.1| ATP/GTP-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|326443857|ref|ZP_08218591.1| ATP/GTP-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|294328105|gb|EFG09748.1| ATP/GTP-binding protein [Streptomyces clavuligerus ATCC 27064]
          Length = 496

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 102/303 (33%), Gaps = 32/303 (10%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS--EEEDVQNFSSKEV 192
            +++     ++++  M   +      W   L+            +    E       + +
Sbjct: 186 HAKSREGKAQVALAQMQ-YMLPRLRGWGQSLSRQMGGGGGGGMATRGPGETKIETDRRRI 244

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTD 249
              +  ++ +I+   +   L    R  +K+    I G++NAGKSSL N L    V +   
Sbjct: 245 REKMAKMRREIAEMKTGRDLKRQERRRHKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENA 304

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  T    +       G L  ++DT G          E  + T  EV  +DLIL + + +
Sbjct: 305 LFATLDPTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGESDLILHVVDGS 364

Query: 310 SKKEISFPK------------NIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGEG 350
                                ++  I +  K+D             E +   +S+ TGEG
Sbjct: 365 HPAPEEQLAAVREVIRDVGAVDVPEIVVVNKADAADPLVLQRLMRVERHSIAVSARTGEG 424

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT------VRYLEMASLNEKDCGLDI 404
           +EEL+  I   L     ++   +P  +  L              +    +L +     ++
Sbjct: 425 IEELLRLIDDELPRPSVEIEVLVPYTQGGLVARVHAEGEVVSEEHGAEGTLLKARVHEEL 484

Query: 405 IAE 407
            A 
Sbjct: 485 AAV 487


>gi|313681854|ref|YP_004059592.1| GTP-binding protein era [Sulfuricurvum kujiense DSM 16994]
 gi|313154714|gb|ADR33392.1| GTP-binding protein Era [Sulfuricurvum kujiense DSM 16994]
          Length = 292

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 22/164 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N +  + +A+V+     TR      +      +   DT G+ + +
Sbjct: 7   VALVGRPNAGKSTLMNWILGEKIALVSQKANATRKRSNAIVMHNDDQIIFVDTPGLHQAE 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDLYS- 333
            ++ +  ++     + + DL++ L   + K        EI+       I + +K D  S 
Sbjct: 67  KLLNQYMLEEALKAIGDCDLVVYLAPASDKTIHYEKFLEIN-ADKRKHIIVLSKIDQISQ 125

Query: 334 --------TYTEEYDHL-----ISSFTGEGLEELINKIKSILSN 364
                    Y    DH      +S     G ++L++ I   L  
Sbjct: 126 ADLLKKIGEYNRFSDHFLALIPMSVNKNVGKKDLLDTIVKHLDE 169


>gi|213691733|ref|YP_002322319.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523194|gb|ACJ51941.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457827|dbj|BAJ68448.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 501

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 93/252 (36%), Gaps = 31/252 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   I  L+  I       + K G   R G   + ++G++NAGKSSL N L   
Sbjct: 244 EMDRRVIRTRIARLRRQIREMAPAREVKRGSRRRFGLPTVAVVGYTNAGKSSLTNRLTGS 303

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G      DT G          E  K T  EV  AD+I
Sbjct: 304 AELVENALFATLDTAVRRAKTRDGRAYAYVDTVGFVRRLPTQLVEAFKSTLEEVAEADVI 363

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + + +                +I    +I  I +  K+D     T E          +
Sbjct: 364 LHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRILVFNKADQADETTRERLAALQPDAFI 423

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLP-------FSIPSHKRHLYHLSQTVRYLEMASL 395
           +S++TGEGL+EL   ++S+L      +         S+ S  R    + + V Y +   L
Sbjct: 424 VSAYTGEGLDELRTAVESLLPVPHVHVNALLPYTAGSLISRVREYGKVDK-VEYRDDGIL 482

Query: 396 NEKDCGLDIIAE 407
            E D    + A+
Sbjct: 483 LEADVDAHLAAQ 494


>gi|15842263|ref|NP_337300.1| GTP-binding protein [Mycobacterium tuberculosis CDC1551]
 gi|13882555|gb|AAK47114.1| GTP-binding protein [Mycobacterium tuberculosis CDC1551]
          Length = 556

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 96/280 (34%), Gaps = 25/280 (8%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q    +  + G   S+  Q   +       +        + +      +E +  +  
Sbjct: 190 SLAQMEYMLPRLRGWGESMSRQAGGRAGGSGGGVGLRGPGETKIETDRRRIRERMAKLRR 249

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
               +       +      +   I I+G++NAGKSSL NAL    V +V D    T +  
Sbjct: 250 DIRAMKQVRDTQRSRRRHSDVPSIAIVGYTNAGKSSLLNALTGAGV-LVQDALFATLEPT 308

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           T   +  +G  V ++DT G          E  + T  EV +ADL++ + + +    ++  
Sbjct: 309 TRRAEFGDGRPVVLTDTVGFVRHLPTQLVEAFRSTLEEVVHADLLVHVVDGSDGHPLAQI 368

Query: 318 KN----------------IDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGLEEL 354
                                + +  K D+ S        +       +S+ TG+G++ L
Sbjct: 369 DAVRQVISEVIADHDGDPPPELLVVNKVDVASDLMLAKLRHGLPGAVFVSARTGDGIDAL 428

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
             ++  ++      +   IP  +  L         ++ A 
Sbjct: 429 RRRMAELVVPADTAVDVVIPYDRGDLVARVHADGRIQQAE 468


>gi|322514173|ref|ZP_08067238.1| GTP-binding protein Era [Actinobacillus ureae ATCC 25976]
 gi|322119959|gb|EFX91961.1| GTP-binding protein Era [Actinobacillus ureae ATCC 25976]
          Length = 304

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +      + Y     DT G+  E 
Sbjct: 15  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + DLI+ + E        E+   K        +    K D   
Sbjct: 75  KRAINRLMNRAASSAIGDVDLIIFVVEGTKCTDDDEMVLNKLRAAKAPVVLAINKVDNIK 134

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H               IS+ +G+ +  L   ++  L       P    + +  
Sbjct: 135 EKDELLPHITELSQKFDFAEILPISAQSGKNVHILQKIVRKSLREGVHHFPEEYVTDRSQ 194

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 195 RFMASEIIR 203


>gi|326791286|ref|YP_004309107.1| GTP-binding proten HflX [Clostridium lentocellum DSM 5427]
 gi|326542050|gb|ADZ83909.1| GTP-binding proten HflX [Clostridium lentocellum DSM 5427]
          Length = 418

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 20/234 (8%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++     K  +  +     ++  H    +      N   + I+G++NAGKS+L N L+  
Sbjct: 164 ELDKRHLKVRMEILQAELAEVEKHRQLIRSRRDKNNTPVVAIVGYTNAGKSTLLNQLSGS 223

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV  V +    T D  T  + L  G  + ++DT G          +    T  E + AD+
Sbjct: 224 DV-YVQNQLFATLDPTTRGITLPSGSEILLTDTVGFIRKLPHHLVKAFYSTLEEAKYADI 282

Query: 302 ILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDH-----LIS 344
           IL + +++S    +  +            +I  + +  K D +     + +H      IS
Sbjct: 283 ILHVMDVSSPHLETHQQVVYETLSRLQISDIPIVAVYNKIDTHVEDYPKDEHATYETYIS 342

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPS-HKRHLYHLSQTVRYLEMASLNE 397
           +  G G E L++ ++ IL +  +     +P  ++  + +  +    LE    NE
Sbjct: 343 AKEGIGCEHLLSVLEEILYSNMQAFDIDVPYTNQDIVRYCHEYGERLEEEYTNE 396


>gi|269120182|ref|YP_003308359.1| small GTP-binding protein [Sebaldella termitidis ATCC 33386]
 gi|268614060|gb|ACZ08428.1| small GTP-binding protein [Sebaldella termitidis ATCC 33386]
          Length = 407

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  N GKSSL NA+  +++AIV++  GTT D +   +++     V + DTAG
Sbjct: 10  NRLHIAIFGKRNMGKSSLINAITGQELAIVSEFAGTTTDPVYKAMEILPIGPVTLIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           I +   +  K  +++T   +   D+ L++ + +
Sbjct: 70  IDDEGSLG-KLRVEKTLTIIRKTDIALVITDAD 101


>gi|71027773|ref|XP_763530.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350483|gb|EAN31247.1| GTP-binding protein, putative [Theileria parva]
          Length = 521

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 26/161 (16%)

Query: 222 IVILGHSNAGKSSLFNALAK--KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I+G  N GKSS+FN + K     ++V D PGTTRD      D  G   +I DT G  +
Sbjct: 65  VSIVGRPNVGKSSIFNRITKLFHYGSVVNDAPGTTRDRQYSIADWNGKYFRIIDTGGYDD 124

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF--------PKNIDFIFIG 326
            D +   E   +    ++ +  I+ + +      +   EI           ++++ +   
Sbjct: 125 -DQLYSDEIKSQINTAIKESSKIIFVVDALEGLTSMDYEIRDYLFKHTKKRRDLEILLCV 183

Query: 327 TKSDLY---STYTEEY-------DHLISSFTGEGLEELINK 357
            K++ Y       +E+        + +S+  G GL EL++K
Sbjct: 184 NKAESYRRGDILAQEFWKLGLGTPYPVSALHGTGLAELLDK 224



 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 28/175 (16%)

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEK 286
            N+GKSSL N L  ++  IV+   GTT+D   + +   G  +   DTAG++  T D    
Sbjct: 247 PNSGKSSLINKLIGENRCIVSPDEGTTQDSTKVFVTY-GEKMSFVDTAGMKLLTKDRRSY 305

Query: 287 EGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDLYSTYTEE 338
              K +   +  +D+ +L+ + +   SK ++        +N   I +  K DL       
Sbjct: 306 LSQKSSLKSIRASDVCILVIDSSWGISKNDVKMAEEIKDENKAAIIVCNKWDLVDKTPSI 365

Query: 339 YDH------------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +D+                  + S+ +G+ ++ +   I+         LP ++ +
Sbjct: 366 FDNVVGYVREKLYWLDYADVLITSAKSGQKVQNIFESIQKTYKQYCSNLPTNLVN 420


>gi|209548602|ref|YP_002280519.1| GTP-binding protein Era [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534358|gb|ACI54293.1| GTP-binding protein Era [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 313

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 79/198 (39%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 24  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 83

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKSDLY- 332
             +++  +   +    +ADLI+LL +       +++  +   K      I +  K D   
Sbjct: 84  RRLDRAMVTSAWGGARDADLIVLLIDSERGLRGDAEAILEGLKEVRQPKILLLNKIDRVN 143

Query: 333 ------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                            +   +IS+  G G +++++ + + L       P +  S     
Sbjct: 144 REDLLALAAAANEKIAFDRTFMISAENGSGCDDVMDYLAATLPEGPWYYPENQISDLPMR 203

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+++
Sbjct: 204 QLAAEITREKLFLRLHQE 221


>gi|210617942|ref|ZP_03291828.1| hypothetical protein CLONEX_04060 [Clostridium nexile DSM 1787]
 gi|210149081|gb|EEA80090.1| hypothetical protein CLONEX_04060 [Clostridium nexile DSM 1787]
          Length = 416

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 99/259 (38%), Gaps = 21/259 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           +S  E + ++ +  +    S L G     L+ +   I       ++ ++     K  +  
Sbjct: 119 ASTNEGKIQVELAQLKYRQSRLVG-LGKSLSRLGGGIGTRGPGEKKLEMDRRLIKGRIAQ 177

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +     D+  H    +          I I+G++NAGKS+L N L   DV +  D    T 
Sbjct: 178 LNRELKDVKRHREVTREQRSRNQVPVIAIVGYTNAGKSTLLNTLTGADV-LEEDKLFATL 236

Query: 256 DVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D  T +L L     V ++DT G          E  K T  E + AD+IL + + ++ +  
Sbjct: 237 DPTTRNLKLPSKQEVLLTDTVGFIRKLPHHLIEAFKSTLEEAKYADIILHVVDASNPQMD 296

Query: 315 SFP------------KNIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEGLEELIN 356
                          KN   I    K D      +   +  ++   IS+ TGEGLE L N
Sbjct: 297 EQMYIVYETLMNLEVKNKPVITAFNKQDKVDGEVILRDFKADHVVNISAKTGEGLENLQN 356

Query: 357 KIKSILSNKFKKLPFSIPS 375
            I+ +L  +   +    P 
Sbjct: 357 VIEEVLREQKILIEQLYPY 375


>gi|282883015|ref|ZP_06291617.1| small GTP-binding protein [Peptoniphilus lacrimalis 315-B]
 gi|281297153|gb|EFA89647.1| small GTP-binding protein [Peptoniphilus lacrimalis 315-B]
          Length = 390

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 17/160 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I I G  N+GKSSL N LA ++V+IV+D  GTT D +   ++ LE   V I DT G
Sbjct: 7   NRIHIGIFGKVNSGKSSLINLLAAREVSIVSDREGTTTDSVYKSMEFLELGPVTIMDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISFPKNIDFIFIGTKSDLY 332
           + +    + K   +R   ++E AD+ ++L   +      + I   K    + +  K D+ 
Sbjct: 67  VCDKS-FLGKLREQRLERDIEKADIAIILFSDSDIGRELELIKKLKKSKILLVINKVDIL 125

Query: 333 STYTEEYDHLI-----------SSFTGEGLEELINKIKSI 361
           S   +E  +             S+    G+EEL  ++  +
Sbjct: 126 SAQEKENIYKNLKDLPFKIIEISTKEKNGIEELKKELVKL 165


>gi|302382897|ref|YP_003818720.1| GTP-binding proten HflX [Brevundimonas subvibrioides ATCC 15264]
 gi|302193525|gb|ADL01097.1| GTP-binding proten HflX [Brevundimonas subvibrioides ATCC 15264]
          Length = 443

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 87/228 (38%), Gaps = 31/228 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + + + I+ LK ++        L    R       + ++G++NAGKS+LFN L   
Sbjct: 181 ELDRRLIADRIVKLKGELEEVRRTRGLHRKQRKKAPFPAVALVGYTNAGKSTLFNRLTGS 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V +  D+   T D     + L  G    I+DT G          E  + T  EV  ADL
Sbjct: 241 EV-LAKDLLFATLDTTQRTIRLPQGRPAIIADTVGFISDLPHELVESFRATLEEVGEADL 299

Query: 302 ILLLKEI-------------NSKKEISFPKNIDFIF--IGTKSDLYSTYTEEYDHLI--- 343
           IL +++I             +  K+I  P+        +  K+DL      E        
Sbjct: 300 ILHVRDIASADTAAQAKDVEDVLKQIEQPEGKPRRILEVWNKTDLLDPEAREAVEGQAAR 359

Query: 344 --------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                   S++TG+G+E L   I  ++ +  +      PS    L  L
Sbjct: 360 SGNTAVAVSAWTGQGIETLRQAITDLIDDDPETELILQPSQGEALAWL 407


>gi|325473670|gb|EGC76859.1| GTP-binding protein era [Treponema denticola F0402]
          Length = 294

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 90/209 (43%), Gaps = 26/209 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  +AGKS+  N  + + V+IV+ IP TTR+ +   ++     +   DT G  +++
Sbjct: 6   VTIIGRPSAGKSTFLNTASGEKVSIVSAIPQTTRNAIRGIVNTTKGQIVFIDTPGYHKSE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS 333
             +  +  +     +E  D +L L +++ +          +  P     +    K+DL S
Sbjct: 66  KKLNLKLQEIAKTRLEEGDAVLYLIDLSREFGEEEKNICSLLIPLQNKTVIGLNKADLKS 125

Query: 334 T---------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +                 +E    IS+   +G+ E+++ +  +L       P  I + + 
Sbjct: 126 SKADLVKKELLSLLPDIPQERIFEISALKDKGINEILSLLIELLPEGEALYPEDIYTDQD 185

Query: 379 HLYHLSQTVRYLEMASLN-EKDCGLDIIA 406
            ++ +++ +R  E A L+  ++    + A
Sbjct: 186 VVFRITEIIR--EQAILHTREEIPHALYA 212


>gi|226306253|ref|YP_002766213.1| GTP-binding protein HflX [Rhodococcus erythropolis PR4]
 gi|229490877|ref|ZP_04384712.1| GTP-binding protein HflX [Rhodococcus erythropolis SK121]
 gi|226185370|dbj|BAH33474.1| putative GTP-binding protein HflX [Rhodococcus erythropolis PR4]
 gi|229322267|gb|EEN88053.1| GTP-binding protein HflX [Rhodococcus erythropolis SK121]
          Length = 491

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 85/222 (38%), Gaps = 28/222 (12%)

Query: 188 SSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV 244
             + +   +  L+ +I         K    +++    I I+G++NAGKSSL N+L    V
Sbjct: 232 DRRRIRERMAKLRREIKGMKAARDTKRTRRLQSDIPSIAIVGYTNAGKSSLLNSLTGSGV 291

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V +    T D  T    L +G    ++DT G          E  + T  EV +ADL+L
Sbjct: 292 -LVENALFATLDPTTRRAALDDGREYVLTDTVGFVRHLPTQLVEAFRSTLEEVTDADLLL 350

Query: 304 LLKEINSK---KEI-------------SFPKNIDFIFIGTKSDLYSTYT-------EEYD 340
            + + +     ++I             +  K    + +  K D     T           
Sbjct: 351 HVVDGSDPLPTEQIKAVREVVTDVLRETDSKAPPELIVVNKIDAADPVTLTQLRGLLPGA 410

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
             +S+ TGEG+ EL   +  +L     ++   +P  +  L  
Sbjct: 411 VFVSARTGEGIAELRAHLSEVLVRPEVEVDVLVPYTRGDLMA 452


>gi|23465868|ref|NP_696471.1| GTP-binding protein [Bifidobacterium longum NCC2705]
 gi|23326569|gb|AAN25107.1| GTP-binding protein [Bifidobacterium longum NCC2705]
          Length = 501

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 80/213 (37%), Gaps = 23/213 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   I  L+  I       + K G   R G   + ++G++NAGKSSL N L   
Sbjct: 244 EMDRRVIRTRIARLRRQIREMAPAREVKRGSRRRFGLPTVAVVGYTNAGKSSLTNRLTGS 303

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G      DT G          E  K T  EV  AD+I
Sbjct: 304 AELVENALFATLDTAVRRAKTRDGRAYAYVDTVGFVRRLPTQLVEAFKSTLEEVAEADVI 363

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + + +                +I    +I  I +  K+D     T E          +
Sbjct: 364 LHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRILVFNKADQADEATRERLAALQPDAFI 423

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +S++TGEGL+EL   ++S+L      +   +P 
Sbjct: 424 VSAYTGEGLDELRTAVESLLPVPHVHVNALLPY 456


>gi|46191061|ref|ZP_00120704.2| COG2262: GTPases [Bifidobacterium longum DJO10A]
 gi|189439027|ref|YP_001954108.1| GTPase [Bifidobacterium longum DJO10A]
 gi|312132467|ref|YP_003999806.1| hflx [Bifidobacterium longum subsp. longum BBMN68]
 gi|189427462|gb|ACD97610.1| GTPase [Bifidobacterium longum DJO10A]
 gi|311773394|gb|ADQ02882.1| HflX [Bifidobacterium longum subsp. longum BBMN68]
          Length = 501

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 80/213 (37%), Gaps = 23/213 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   I  L+  I       + K G   R G   + ++G++NAGKSSL N L   
Sbjct: 244 EMDRRVIRTRIARLRRQIREMAPAREVKRGSRRRFGLPTVAVVGYTNAGKSSLTNRLTGS 303

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G      DT G          E  K T  EV  AD+I
Sbjct: 304 AELVENALFATLDTAVRRAKTRDGRAYAYVDTVGFVRRLPTQLVEAFKSTLEEVAEADVI 363

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + + +                +I    +I  I +  K+D     T E          +
Sbjct: 364 LHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRILVFNKADQADEATRERLAALQPDAFI 423

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +S++TGEGL+EL   ++S+L      +   +P 
Sbjct: 424 VSAYTGEGLDELRTAVESLLPVPHVHVNALLPY 456


>gi|320449719|ref|YP_004201815.1| GTP-binding protein Era [Thermus scotoductus SA-01]
 gi|320149888|gb|ADW21266.1| GTP-binding protein Era [Thermus scotoductus SA-01]
          Length = 301

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 11/149 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L    VA ++  P TTR  L   L      +   DT G+ +  
Sbjct: 10  VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGNRQIVFVDTPGLHKPM 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNIDFIFIGTKSDL 331
           D + +   +  +  + + + ++ + ++           +K        +  + +G K D 
Sbjct: 70  DALGEFMDQEVYEALSDVNAVVWVVDLRHPPTPEDELVAKALKPLVGKVPILLVGNKLD- 128

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKS 360
            + Y EE      +   E    +++ +  
Sbjct: 129 AAKYPEEALKAYHALLPEAEARMLSALDE 157


>gi|254374550|ref|ZP_04990031.1| hypothetical protein FTDG_00722 [Francisella novicida GA99-3548]
 gi|151572269|gb|EDN37923.1| hypothetical protein FTDG_00722 [Francisella novicida GA99-3548]
          Length = 297

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 21/164 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N + K  V+I +  P TTR  +T    L        DT GI  + 
Sbjct: 7   ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 66

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSD--- 330
              + K   K      ++ D+IL + E+    E+            I    +  K D   
Sbjct: 67  PKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKHSEIRIFLVVNKVDKKK 126

Query: 331 ------LYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSN 364
                    +  E+         S+  G  + EL ++I+ +L  
Sbjct: 127 SLEAAMFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLLPE 170


>gi|78223647|ref|YP_385394.1| ferrous iron transport protein B [Geobacter metallireducens GS-15]
 gi|78194902|gb|ABB32669.1| Ferrous iron transport protein B [Geobacter metallireducens GS-15]
          Length = 663

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 19/160 (11%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G ++ ++G+ N GKS LFNAL    VA V++ PGT+ +V      +EG   +I DT G+ 
Sbjct: 21  GKRVALVGNPNVGKSVLFNALTGAYVA-VSNYPGTSVEVSRGSTTIEGEQYEIIDTPGMY 79

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLY 332
               I E+E + R  L  E  D++L + +  + + +           +  + +    D  
Sbjct: 80  SILPITEEERVAREILLGERPDVVLHVLDARNLERMLAMTIQLVEAGLPVVLVVNIMDEA 139

Query: 333 STYTEEYDHL------------ISSFTGEGLEELINKIKS 360
                  D               ++    GL E+   I S
Sbjct: 140 ERMGLSIDIPLLQEKLGIPVIGAATAKKRGLPEIREAIAS 179


>gi|303256256|ref|ZP_07342272.1| GTP-binding protein [Burkholderiales bacterium 1_1_47]
 gi|331001317|ref|ZP_08324943.1| hydrogenase maturation GTPase HydF [Parasutterella
           excrementihominis YIT 11859]
 gi|302860985|gb|EFL84060.1| GTP-binding protein [Burkholderiales bacterium 1_1_47]
 gi|329569044|gb|EGG50840.1| hydrogenase maturation GTPase HydF [Parasutterella
           excrementihominis YIT 11859]
          Length = 404

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 20/171 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  NAGKSS+ NAL K+++A+V+D+ GTT D +   +++     V I DTAGI 
Sbjct: 13  VHIGIFGRRNAGKSSVINALTKQNIALVSDVAGTTTDPVFKAMEILPLGPVMIIDTAGID 72

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNID-----FIFIGTKSD 330
           +  D+  K  I +T   +   D+ +++ +     S  E S           +I    K +
Sbjct: 73  DIGDLG-KLRIGKTKEVMTKTDVAVIVIDAANDVSDFERSLVSEFKKLGTTYILAANKIE 131

Query: 331 LYSTYTE----------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +   E          E    IS+   +G++EL + I       F+  P 
Sbjct: 132 TVADPAERIAFLDKAFGEKVVPISALKKKGIDELRSLIVKTAPEAFEDGPM 182


>gi|298346688|ref|YP_003719375.1| GTP-binding proten HflX [Mobiluncus curtisii ATCC 43063]
 gi|298236749|gb|ADI67881.1| GTP-binding proten HflX [Mobiluncus curtisii ATCC 43063]
          Length = 524

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 23/207 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + + + +  L+ ++ +     +     R       + I+G++NAGKSSL N LA  
Sbjct: 251 ELDRRRIRSRMARLRRNLKALAPTREAKRASRKAGGIPAVAIVGYTNAGKSSLLNRLAGA 310

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           ++ +   +  T    +      EG    ++DT G          E  + T  E   ADLI
Sbjct: 311 NLLVHDALFATLDPSVRRAHTPEGREYTLADTVGFVRRLPTELVEAFRSTLEETAMADLI 370

Query: 303 LLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + + ++   ++               + I  + +  K D  S              + 
Sbjct: 371 LHVVDGSNPDPMAQVAAVDATLELVEGIEEIPVMMVVNKIDQASAPALALLRHSLPEAYY 430

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL 369
           +S+ TGEG+E L   I   L    +++
Sbjct: 431 VSARTGEGIEALQQSIADRLPWPGQRV 457


>gi|167951370|ref|ZP_02538444.1| Small GTP-binding protein domain [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 188

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 18/148 (12%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+LFN L +   A+V D PG TRD       L      + DT G+   D + 
Sbjct: 1   MGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRKYGMGRLGPGPYVVVDTGGLSGEDGVD 60

Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336
                ++    +  AD +LLL +             E           +  KS+  S   
Sbjct: 61  LL-MEQQVRQAIGEADHVLLLLDAREGCTGGDAIIAEQLRRTGKLVTAVVNKSEGLSRDA 119

Query: 337 EEYDHL---------ISSFTGEGLEELI 355
              +           I++  G+G+  LI
Sbjct: 120 AANEFFSLGLGEPKAIAAAHGQGVHGLI 147


>gi|85708366|ref|ZP_01039432.1| GTPase [Erythrobacter sp. NAP1]
 gi|85689900|gb|EAQ29903.1| GTPase [Erythrobacter sp. NAP1]
          Length = 302

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 73/203 (35%), Gaps = 22/203 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L  + VAI +    TTR  +          + + DT GI    
Sbjct: 13  VAVIGAPNAGKSTLVNQLVGQKVAITSAKAQTTRARMLGIALHGSVQMILVDTPGIFAPK 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE--------INSKKEISFPKNIDFIFIGTKSDLYS 333
             +++  +   +   E+AD +LL+ +        +    E    ++   I +  K D   
Sbjct: 73  RRLDRAMVSAAWEGAESADAVLLIVDPIKQRRHELEPLLEALEQRSERKILVLNKVDKAK 132

Query: 334 TYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                            E    +S+ +G+G+ E+   +   +       P    S     
Sbjct: 133 KEPLLELAQEMSQRIDFEEIFFVSALSGDGVAEMKEALAEQMPEGVWMYPEDQVSDASER 192

Query: 381 YHLSQTVRYLEMASLNEKDCGLD 403
              ++  R      L+E +   D
Sbjct: 193 LLAAEITREQLYQQLHE-ELPYD 214


>gi|297171260|gb|ADI22267.1| GTPase [uncultured Gemmatimonadales bacterium HF0200_36I24]
 gi|297171355|gb|ADI22359.1| GTPase [uncultured nuHF2 cluster bacterium HF0500_02A10]
          Length = 300

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 67/165 (40%), Gaps = 14/165 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G  N+GKS+L N L  + ++IVT    TT   +T     +       DT G+    
Sbjct: 11  IALAGLPNSGKSTLMNRLVGQKISIVTPKAQTTWQRITGIRTTDNEQGIFLDTPGLLLAK 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI---------NSKKEISFPKNIDFIFIGTKSDLY 332
           D+++K  ++ +   +  AD+++L+ +          +  KE+    +        K D+ 
Sbjct: 71  DLLQKGMLEESLEAISEADVVVLILDATNFSSNKDKDQIKEVLSLSSAPVFAAINKIDIA 130

Query: 333 STYTEEYDHLISS----FTGEGLEELINK-IKSILSNKFKKLPFS 372
           +                    G+  L+++ ++ +  +  K LP S
Sbjct: 131 NPRDITDIVGWIESELGVEARGISALMDRGVEELWVDLAKHLPES 175


>gi|85858938|ref|YP_461140.1| GTPase [Syntrophus aciditrophicus SB]
 gi|85722029|gb|ABC76972.1| GTPase [Syntrophus aciditrophicus SB]
          Length = 420

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 9/124 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I +LG +N GKSS+ N +  +D+AI + + GTT DV+   ++L     V   DTAG
Sbjct: 10  NRLHIALLGRTNVGKSSILNMITGQDIAITSPVAGTTTDVVEKAMELLPLGPVLFLDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN----SKKEISFP---KNIDFIFIGTKS 329
           + +   +     +K+T    + AD+ +L+ E +     ++E+      +    I    K 
Sbjct: 70  LDDVSKLSSLR-LKKTEKIFDRADVAILVTEPDFWGTYEEEVLAEMNRRKTPVIVAINKI 128

Query: 330 DLYS 333
           DL+ 
Sbjct: 129 DLHR 132


>gi|5199325|gb|AAD40807.1|AF145049_8 ATP/GTP-binding protein [Streptomyces fradiae]
          Length = 425

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + + +++  ++ ++    +   L    R G     + + G++NAGKSSL N L   DV
Sbjct: 165 DRRRLRDNMESVRRELEQMENGRALRRKRRRGSNIPSVALAGYTNAGKSSLLNRLTGADV 224

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
            +V D    T D     +   G +  ++DT G          +  + T  EV  ADL+L 
Sbjct: 225 -LVKDALFATLDPTVRRVRAGGRVCTLTDTVGFVSRLPHHLVDAFRSTLEEVTEADLVLH 283

Query: 305 LKEINSKKEISFPK------------NIDFIFIGTKSDLYST-------YTEEYDHLISS 345
           + + +    +   +             +  I +  K+D             E    ++S+
Sbjct: 284 VVDSSHPDPLRQIETVRAVIGDIGGAGVPEILVANKADAAPEGALERLLAAEPAAEVVSA 343

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            TG G++ L++++   LS    ++   +P  +
Sbjct: 344 RTGAGVDRLLDRVAERLSGTGLQMELLLPYTE 375


>gi|332970304|gb|EGK09296.1| GTP-binding protein Era [Kingella kingae ATCC 23330]
          Length = 324

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 74/220 (33%), Gaps = 24/220 (10%)

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            +   + + N       +    +  R G+ I I+G  N GKS+L N L  + ++I +   
Sbjct: 9   QIKQKVNIMNVEEFLAKEQAAAQNYRCGF-IAIVGRPNVGKSTLMNHLIGQKISITSKKA 67

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLL----- 305
            TTR  +T     +       DT G + +  + +           +   D I  +     
Sbjct: 68  QTTRHKVTGIYTDDTAQFVFVDTPGFQTDHRNALNDRLNLNVTEAMSGVDAIAFVLEAMR 127

Query: 306 -KEINSKKEISFPKNIDFIFIGTKSD------------LYSTYTEEYDH----LISSFTG 348
             E +       PKN   + +  K D                   EY+     ++S+  G
Sbjct: 128 FTEADRTVLKQLPKNTPVVLVVNKIDKDKAKDKLALNAFIEQVRAEYEFAAVEVVSAKHG 187

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             +  L+  +K  L       P  + + K   +   + VR
Sbjct: 188 LRIANLLETLKPFLPESVPMYPEDMVTDKSSRFLAMEIVR 227


>gi|84684892|ref|ZP_01012792.1| GTP-binding protein HflX [Maritimibacter alkaliphilus HTCC2654]
 gi|84667227|gb|EAQ13697.1| GTP-binding protein HflX [Rhodobacterales bacterium HTCC2654]
          Length = 427

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 113/290 (38%), Gaps = 32/290 (11%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ M  +S + + L   W   L   R  +       E +       + +   
Sbjct: 121 AATREGVLQVEMAALSYQRTRLVRAWTH-LERQRGGLGFVGGPGETQI--EADRRAIDEQ 177

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  L+  ++  +   +L    R       + ++G++NAGKS+LFN +   +V    D+  
Sbjct: 178 LTRLRKQLAKVVKTRELRRAARAKVPFPVVALVGYTNAGKSTLFNRMTGAEVM-AKDMLF 236

Query: 253 TTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D     +DL  G  V +SDT G             + T  EV  ADLIL +++I   
Sbjct: 237 ATLDPTMRGVDLPGGRTVILSDTVGFISDLPTQLVAAFRATLEEVLGADLILHVRDIAHD 296

Query: 312 -------------KEISFPKNIDFIFIGTKSDLYSTYTE----------EYDHLISSFTG 348
                        +++   +++  I +  K D     T           +    +S++TG
Sbjct: 297 ETQEQAEDVLAILEDLGVDEDVPLIEVWNKIDKLDDQTRAAYLTQADRTDEVVAMSAWTG 356

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLEMASLNE 397
           EG++ L   I + LS + ++    IP  + R    L +T   L+     +
Sbjct: 357 EGVDALYPAIDAALSVETREEDLLIPFSEGRKRASLHETGVVLDEVQTED 406


>gi|317374939|sp|Q8EW66|ERA_MYCPE RecName: Full=GTPase Era
          Length = 298

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 23/170 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280
           + I+G  N GKS+L N + +++V I ++ P TTR+++ I  D +E  ++   DT G+   
Sbjct: 6   VSIVGKPNVGKSTLLNNIFEREVVISSNKPQTTRNMIEISYDSIEDCVINFIDTPGLHNP 65

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNI---DFIFIGTKSDL 331
            + ++     +    ++ +DL+L L +++       ++ +   K+    + + +  K DL
Sbjct: 66  KNKLDLFLNSQVKASLKKSDLVLFLFDLSRDFDSEDEECLKVLKDFNCNNVVLVLNKRDL 125

Query: 332 YSTYTEEYDHLIS-------------SFTGEGLEELINKIKSILSNKFKK 368
            S    +                   S + E +  L+N IK  +     +
Sbjct: 126 KSEEEIKNAKQSISKMFDFTNVLEINSKSKEDVSVLLNTIKEHIKEYEGE 175


>gi|303252176|ref|ZP_07338344.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307247516|ref|ZP_07529561.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302648959|gb|EFL79147.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306856019|gb|EFM88177.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 304

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +      + Y     DT G+  E 
Sbjct: 15  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + DLI+ + E        E+   K        +    K D   
Sbjct: 75  KRAINRLMNRAASSAIGDVDLIIFVVEGTKWTDDDEMVLNKLRSAKAPVVLAINKVDNIK 134

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H               IS+  G+ +  L   ++  L       P    + +  
Sbjct: 135 EKDELLPHITELSQKFDFAEILPISAKRGKNVHILQKIVRKSLREGVHHFPEEYVTDRSQ 194

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 195 RFMASEIIR 203


>gi|317152308|ref|YP_004120356.1| small GTP-binding protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942559|gb|ADU61610.1| small GTP-binding protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 411

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 18/167 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  NAGKSSL NAL  ++ AIV+D PGTT D +    +L     V   DTAG+ 
Sbjct: 11  LVIALAGRRNAGKSSLLNALTGQETAIVSDTPGTTTDPVAKHYELLPLGPVTFYDTAGLD 70

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFPKNIDFIFIG--TKSDL 331
           +T D+      K T   +  +D+ +++        + +  +   K +    I    K+DL
Sbjct: 71  DTGDLGGLRM-KATRKVLYRSDVAVVVVGEEGVTAHERAILDMVKGLSIPCIVAFNKTDL 129

Query: 332 YSTYTEEYDHLIS---------SFTGEGLEELINKIKSILSNKFKKL 369
            +  +EE     S         + TG G +EL   I      +F++ 
Sbjct: 130 RTPASEELALCRSLGAPCLTVCARTGAGADELKRAIIDAAPLEFRQE 176


>gi|312139394|ref|YP_004006730.1| gtpase [Rhodococcus equi 103S]
 gi|325672725|ref|ZP_08152421.1| GTP-binding protein [Rhodococcus equi ATCC 33707]
 gi|311888733|emb|CBH48045.1| GTPase [Rhodococcus equi 103S]
 gi|325556602|gb|EGD26268.1| GTP-binding protein [Rhodococcus equi ATCC 33707]
          Length = 492

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 81/225 (36%), Gaps = 34/225 (15%)

Query: 188 SSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV 244
             + +   +  L+ +I         K    +R+    + I+G++NAGKSSL NAL    V
Sbjct: 233 DRRRIRERMAKLRREIKGMKAARDTKRSHRLRSEIPSVAIVGYTNAGKSSLLNALTGSGV 292

Query: 245 ----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
               A+   +  TTR         +G    ++DT G          E  + T  EV +AD
Sbjct: 293 LVQNALFATLDPTTRQASFE----DGREYVLTDTVGFVRHLPTQLVEAFRSTLEEVTDAD 348

Query: 301 LILLLKEINSKKEISFPK----------------NIDFIFIGTKSDLYSTY-------TE 337
           L+L + + +        K                    + +  K D              
Sbjct: 349 LLLHVVDGSDPLPTDQIKAVREVVTEVIRENDTTAPPELIVVNKIDAADPVVLTQLRGLL 408

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                +S+ TGEG++EL  ++  I+     ++   +P  +  L  
Sbjct: 409 PGAVFVSARTGEGIDELRTRLGEIVRRPEVEVDVLVPYSRGDLVA 453


>gi|238602569|ref|XP_002395715.1| hypothetical protein MPER_04185 [Moniliophthora perniciosa FA553]
 gi|215466926|gb|EEB96645.1| hypothetical protein MPER_04185 [Moniliophthora perniciosa FA553]
          Length = 112

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/72 (50%), Positives = 53/72 (73%)

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           K+ L N LA+++ AIVT IPGTTRD+L + LD+ G  V ++DTAG+R+T+D+VE  GI+R
Sbjct: 4   KAVLLNFLAQREAAIVTSIPGTTRDILEVSLDIGGLPVIVADTAGLRQTEDVVENIGIER 63

Query: 292 TFLEVENADLIL 303
               V+ +D+ L
Sbjct: 64  ARNRVQGSDISL 75


>gi|197105332|ref|YP_002130709.1| GTP-binding protein Era [Phenylobacterium zucineum HLK1]
 gi|196478752|gb|ACG78280.1| GTP-binding protein Era [Phenylobacterium zucineum HLK1]
          Length = 326

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 82/212 (38%), Gaps = 31/212 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   I+G  NAGKS+L N L    V+IVT    TTR  +          + + DT G
Sbjct: 19  RAGF-CAIIGAPNAGKSTLTNRLVGAKVSIVTQKVQTTRFPVRGVAIAGDAQIVLVDTPG 77

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK-----------------EINSKKEISFPKN 319
           I +    +++  ++  +   E+AD ++ L                  +++S  E      
Sbjct: 78  IFQPRRRLDRAMVRAAWGGAEDADAVVHLVDAAAQLGDKPADRKAQADVDSIVEGLKKSG 137

Query: 320 IDFIFIGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
              I    K D             L+ T   +   ++S+ +G G+E+L  ++ +++ +  
Sbjct: 138 RKVILALNKIDAVKREALLDISKTLFDTGVYDEVFMVSATSGSGVEDLKARLAALMPDNP 197

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
              P    +        ++  R      L+E+
Sbjct: 198 WFYPEDQTADLPARLLAAEITREKLYLRLHEE 229


>gi|125524978|gb|EAY73092.1| hypothetical protein OsI_00968 [Oryza sativa Indica Group]
          Length = 627

 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 17/158 (10%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           +   G+  +   ++ I+G  N GKS+L N L ++   +V    G TRD +      +   
Sbjct: 189 EAHEGDESKLPLQLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTRDSIRTQFQFDNRT 248

Query: 269 VKISDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFP---- 317
           V + DTAG  E    +       + ++   +  A ++ L+ +      SK  ++ P    
Sbjct: 249 VYLVDTAGWMERSGKEKGPASLSVVQSRKNLMRAHIVALVLDGEKIAKSKSSMNHPEVLI 308

Query: 318 ------KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
                 +    + I  K DL       +D +I +   E
Sbjct: 309 ARQAIEEGRGLVVIVNKMDLLRENRPLFDKVIDAVPKE 346


>gi|225174625|ref|ZP_03728623.1| GTP-binding proten HflX [Dethiobacter alkaliphilus AHT 1]
 gi|225169752|gb|EEG78548.1| GTP-binding proten HflX [Dethiobacter alkaliphilus AHT 1]
          Length = 425

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          L         +L+ +   I        + +V     ++ ++D
Sbjct: 112 RAKTKEGKLQVELAQLHYLLPRLTGMGVQLSRLAGGIGTRGPGETKLEVDRRRIRKRISD 171

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +     +I  H +  +          + ++G++NAGKS+L NAL   DV    D    T 
Sbjct: 172 LKKEIEEIKKHRTLHRKARQEVPLPVVTLVGYTNAGKSTLLNALTNADV-FAEDKLFATL 230

Query: 256 DVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D  T  ++L G  +  ++DT G  +          + T  EV  ADL+L + + +  +  
Sbjct: 231 DPTTRQVELPGGSMFLLTDTVGFIQKLPHHLVAAFRATLEEVLEADLLLHVVDTSHPQAA 290

Query: 315 SF------------PKNIDFIFIGTKSDL------YSTYTEEYDHL--ISSFTGEGLEEL 354
                          + +  I +  K D+       S    E+     +S+    GL+ L
Sbjct: 291 EQMNAVQNILQQLGAQELPAIVVFNKMDMPEAHANLSALAGEWPEHVAVSAKNKVGLDTL 350

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +  I   L     +L  ++P     +  + +    LE          +
Sbjct: 351 LEAISDNLQKNHVRLDLTLPFGSEKILAIIRKYGQLEQEEYKADGIAV 398


>gi|185179024|ref|ZP_02964773.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024049|ref|ZP_02996802.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518321|ref|ZP_03003835.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|188524324|ref|ZP_03004361.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195867961|ref|ZP_03079958.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273309|ref|ZP_03205845.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209554232|ref|YP_002284938.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225550907|ref|ZP_03771856.1| GTP-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225551511|ref|ZP_03772457.1| GTP-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|226741403|sp|B5ZBZ8|ERA_UREU1 RecName: Full=GTPase Era
 gi|184209115|gb|EDU06158.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188019082|gb|EDU57122.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188998143|gb|EDU67240.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|195659806|gb|EDX53186.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195660357|gb|EDX53617.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249829|gb|EDY74609.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209541733|gb|ACI59962.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225379326|gb|EEH01691.1| GTP-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|225380061|gb|EEH02423.1| GTP-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 300

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 89/209 (42%), Gaps = 26/209 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NA+ +K V+I+++ P TTR+ +    + +   +  +DT G  E  
Sbjct: 8   VAIVGKPNVGKSTLINAIMRKKVSIISNKPQTTRNAIKEIYEDDDSAIIFTDTPGFHEPS 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
           + ++        +  + A++IL +  ++ +           I      + I + +K+++ 
Sbjct: 68  NKLDLFLNHEIEVSYKEANVILFVSSMDKELSEDDFEIINLIKESNKENVILVISKAEVA 127

Query: 333 STYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
               +              +    IS+     +++LIN IK  L        F     K 
Sbjct: 128 KNQDKIDERVHQLNKYIQFKDVIQISALHVINIDKLINTIKQYLHKDVVTDYFRQKVEKE 187

Query: 379 HLYHLSQTVRYLEMASLNE---KDCGLDI 404
             + +++T+R   + +LN       G++I
Sbjct: 188 DKFIIAETIREQCLLNLNHEVPHGVGVEI 216


>gi|148360408|ref|YP_001251615.1| GTP-binding protein Era [Legionella pneumophila str. Corby]
 gi|148282181|gb|ABQ56269.1| GTP-binding protein Era [Legionella pneumophila str. Corby]
          Length = 311

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 73/189 (38%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N + ++ ++I +  P TTR  +      + +     DT GI + +
Sbjct: 24  IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEDEFQFVYVDTPGIHQGN 83

Query: 282 DIVEKEGIKRT-FLEVENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSD--- 330
                  + +T    + + D+I  L +    K+       +     +  I +  K D   
Sbjct: 84  AKAINRMMNKTAISVLRDVDVIAFLVDGTHWKDEDEYVLNLIKQAKVPCILVVNKVDKIT 143

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      +   Y       +S+ TG  ++EL  K+K+ L       P    + +  
Sbjct: 144 DKTQLLPWIEQISQRYQFAAIIPLSAKTGLQVDELEGKLKTYLPEGPHLFPDDQFTDRSI 203

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 204 KFLCAELLR 212


>gi|116053092|ref|YP_793411.1| putative GTP-binding protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894038|ref|YP_002442907.1| putative GTP-binding protein [Pseudomonas aeruginosa LESB58]
 gi|254244166|ref|ZP_04937488.1| hypothetical protein PA2G_05009 [Pseudomonas aeruginosa 2192]
 gi|296391783|ref|ZP_06881258.1| GTP-binding protein HflX [Pseudomonas aeruginosa PAb1]
 gi|313109944|ref|ZP_07795872.1| putative GTP-binding protein [Pseudomonas aeruginosa 39016]
 gi|115588313|gb|ABJ14328.1| putative GTP-binding protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126197544|gb|EAZ61607.1| hypothetical protein PA2G_05009 [Pseudomonas aeruginosa 2192]
 gi|218774266|emb|CAW30083.1| probable GTP-binding protein [Pseudomonas aeruginosa LESB58]
 gi|310882374|gb|EFQ40968.1| putative GTP-binding protein [Pseudomonas aeruginosa 39016]
          Length = 433

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 108/311 (34%), Gaps = 25/311 (8%)

Query: 115 RRAFENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
            RAFE   +D            + T E + ++ +  +    + L   W   L   +  I 
Sbjct: 94  ERAFECRVLDRTGLILDIFAQRARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIG 152

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
                  + +      +  +  I      + S   Q + G    +   + ++G++NAGKS
Sbjct: 153 LRGPGETQLETDRRLLRVRIRQIKQRLEKVRSQREQARRGRKRADIPAVSLVGYTNAGKS 212

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRT 292
           +LFNAL   +V    +    T D     L L+    V ++DT G          E  + T
Sbjct: 213 TLFNALTASEV-YAANQLFATLDPTLRRLQLDDLGPVVLADTVGFIRHLPHKLVEAFRAT 271

Query: 293 FLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEEYD 340
             E  NADL+L + +    +  +                +  + +  K DL  +      
Sbjct: 272 LEESSNADLLLHVIDAYEPERDAQVEQVLAVLGEIGANELPMLEVYNKVDLLPSVEPHIQ 331

Query: 341 ---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                      +S+ TGEGL+ L   I  +L          +P     L      +  ++
Sbjct: 332 RDDSGKPVRVWLSAQTGEGLDLLRQAIAELLGEDLFVGTLRLPQRLGRLRAQLFELGAVQ 391

Query: 392 MASLNEKDCGL 402
             + +E+ C L
Sbjct: 392 SEAHDEEGCTL 402


>gi|317125259|ref|YP_004099371.1| GTP-binding protein Era [Intrasporangium calvum DSM 43043]
 gi|315589347|gb|ADU48644.1| GTP-binding protein Era [Intrasporangium calvum DSM 43043]
          Length = 322

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 86/223 (38%), Gaps = 27/223 (12%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G   R G+   ++G  NAGKS+L NAL  + VAI +  P TTR  +          + + 
Sbjct: 20  GSGYRAGF-ACLVGRPNAGKSTLTNALVGQKVAITSSKPQTTRHTIRGVATTSTAQLILV 78

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNI 320
           DT G+ +   ++ +         +   D++      + +            +E+   +  
Sbjct: 79  DTPGLHKPRTLLGERLNDLVRETLLEVDVVGFCLPADQRIGPGDAFIARELEELRSVRRR 138

Query: 321 DFIFIGTKSDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFK 367
             + I TK+D                    E     S+ +G+ +EE+ + + S L    +
Sbjct: 139 PVVAIATKADTVDRERLAEHLITIDRLGDWEAIIPCSAVSGDQVEEVRDVLASYLPESPQ 198

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL 409
             P  + + +     +++ VR   +  + +E    L ++ E +
Sbjct: 199 LYPDGVLTDEPEAIMIAELVREAALEGVRDELPHSLAVVVEEM 241


>gi|311895955|dbj|BAJ28363.1| putative GTP-binding protein Era homolog [Kitasatospora setae
           KM-6054]
          Length = 309

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 10/128 (7%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+    +G  NAGKS+L NAL    VAI +D P TTR  +   +      + + DT 
Sbjct: 8   YRSGF-ACFVGRPNAGKSTLTNALVGTKVAITSDRPQTTRHTVRGIVHRPDSQLVLVDTP 66

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIG 326
           G+ +   ++ +             D+I      + K         KE++  +    + I 
Sbjct: 67  GLHKPRTLLGERLNDLVRTTWAEVDVIGFCVPADQKLGPGDKFIAKELAEIRKTPKVAIV 126

Query: 327 TKSDLYST 334
           TK+DL  +
Sbjct: 127 TKTDLVDS 134


>gi|282165329|ref|YP_003357714.1| GTP-binding protein [Methanocella paludicola SANAE]
 gi|282157643|dbj|BAI62731.1| GTP-binding protein [Methanocella paludicola SANAE]
          Length = 420

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 88/227 (38%), Gaps = 26/227 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+        +  I    + I     + +     +    + + G++NAGKS+L NAL  +
Sbjct: 154 DIYESEITGRIAKIEAELDVIRKRQHETRKQRKEKGFDLVALAGYTNAGKSTLMNALVGE 213

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +  D   TT    T  L +      ++DT G  +       E  + T  E+  AD+I
Sbjct: 214 TV-VAKDQLFTTLVPTTRSLQIGQRKTLLTDTVGFIKNLPHFMVEAFRSTLEEIYLADVI 272

Query: 303 LLLKEINSKKEISFPK-------------NIDFIFIGTKSDLYSTYTEE----------- 338
           +L+ +++   E    K              +  I    KSDL +    E           
Sbjct: 273 ILVVDVSEPPEALVDKLVTCHDTMWDEIGPVPVITALNKSDLITEEELEERKQAIVHLAP 332

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           +  +IS+ TGEGL+EL  KI   L  K+      +P     L  LSQ
Sbjct: 333 HPVVISARTGEGLDELKQKIGKYLP-KWTSSEVVLPRTVEGLSMLSQ 378


>gi|88855440|ref|ZP_01130104.1| GTP-binding protein [marine actinobacterium PHSC20C1]
 gi|88815347|gb|EAR25205.1| GTP-binding protein [marine actinobacterium PHSC20C1]
          Length = 516

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 22/214 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+  I       +     R+ +    + I G++NAGKSSL N L + 
Sbjct: 258 ELDRRRIHTRMARLRKQIKGFAPAREAKRANRDRFEVPSVAIAGYTNAGKSSLLNRLTRA 317

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G L  +SDT G          E  + T  E+  AD+I
Sbjct: 318 GVLVENALFATLDATVRRSETADGRLFTLSDTVGFVRNLPHQLVEAFRSTLEEIGQADVI 377

Query: 303 LLLKEINSKKEISF------------PKNIDFIFIGTKSDLYS-------TYTEEYDHLI 343
           + + + +     +              ++I  I +  KSDL            E     +
Sbjct: 378 VHVVDASHPDPGAQLSTVRDVIGELGARDIPEIVVFNKSDLADDDQRLVIRGLEPTGIFV 437

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           S+ +GEG++EL ++I  +L     K+   +P  +
Sbjct: 438 SARSGEGIDELNSRIAELLPAPEIKVTLLVPYDR 471


>gi|226941245|ref|YP_002796319.1| ThiH [Laribacter hongkongensis HLHK9]
 gi|226716172|gb|ACO75310.1| ThiH [Laribacter hongkongensis HLHK9]
          Length = 883

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 18/165 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRE 279
            I + G  NAGKSS FNAL  ++ AIV+  PG+T D +    + L    V   DTAG+ +
Sbjct: 482 HIGLFGCRNAGKSSWFNALTGQERAIVSARPGSTTDPVEKAYELLPFGPVLFVDTAGLDD 541

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKS--- 329
             ++     +++T   +   DL++LL      ++        +  + + ++ +       
Sbjct: 542 EGELGMLR-VQKTRAVLARVDLVVLLVSPGGLRDEDRVVLREARARGVPYLVLVNHCDVE 600

Query: 330 ----DLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKK 368
               D+ +   +E      +SS + + + E+   + ++L     +
Sbjct: 601 RPAHDVLAALQQEAGRCLTVSSLSDDDVAEVRQALLALLQPPAGE 645


>gi|330501624|ref|YP_004378493.1| HSR1-like GTP-binding protein [Pseudomonas mendocina NK-01]
 gi|328915911|gb|AEB56742.1| GTP-binding protein, HSR1-related protein [Pseudomonas mendocina
           NK-01]
          Length = 433

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 113/318 (35%), Gaps = 27/318 (8%)

Query: 115 RRAFENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
            RAFE   +D            + T E + ++ +  +    + L   W   L   +  I 
Sbjct: 94  ERAFECRVLDRTGLILDIFAQRARTHEGKLQVELAQLDHMSTRLVRGWTH-LERQKGGIG 152

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
                  + +      +  +  I      + S   Q + G    +   + ++G++NAGKS
Sbjct: 153 LRGPGETQLETDRRLLRVRIRQIKQKLEKVRSQREQARRGRKRADIPSVSLVGYTNAGKS 212

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRT 292
           +LFNAL   +V    D    T D     L+L+    + ++DT G          E  + T
Sbjct: 213 TLFNALTTSEV-YAADQLFATLDPTLRRLELDDLGPIVLADTVGFIRHLPHKLVEAFRAT 271

Query: 293 FLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYD 340
             E  N+DL+L + + +  + ++  +            ++  + +  K DL      +  
Sbjct: 272 LEESSNSDLLLHVIDAHEPERMAQIEQVQEVLKEIGASDLPMLEVYNKLDLLDGVEPQIQ 331

Query: 341 ---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                      +S+  G GLE L   +  +L          +P     L      +  ++
Sbjct: 332 RDGDGNPVRVWLSAREGRGLELLRQAVAELLGEDLFIATLQLPQRLGRLRAQFFALGAVQ 391

Query: 392 MASLNEKDCGLDIIAENL 409
             + +E+     ++A  L
Sbjct: 392 SEAHDEQGHS--LLAVRL 407


>gi|296454449|ref|YP_003661592.1| small GTP-binding protein [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183880|gb|ADH00762.1| small GTP-binding protein [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 501

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 80/213 (37%), Gaps = 23/213 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   I  L+  I       + K G   R G   + ++G++NAGKSSL N L   
Sbjct: 244 EMDRRVIRTRIARLRRQIREMAPAREVKRGSRRRFGLPTVAVVGYTNAGKSSLTNRLTGS 303

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G      DT G          E  K T  EV  AD+I
Sbjct: 304 AELVENALFATLDTAVRRAKTRDGRAYAYVDTVGFVRRLPTQLIEAFKSTLEEVAEADVI 363

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + + +                +I    +I  I +  K+D     T E          +
Sbjct: 364 LHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRILVFNKADQADEATRERLAALQPDAFI 423

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +S++TGEGL+EL   ++S+L      +   +P 
Sbjct: 424 VSAYTGEGLDELRTAVESLLPVPHVHVNALLPY 456


>gi|254360745|ref|ZP_04976893.1| GTP-binding protein Era [Mannheimia haemolytica PHL213]
 gi|153091315|gb|EDN73289.1| GTP-binding protein Era [Mannheimia haemolytica PHL213]
          Length = 305

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +      + Y     DT G+  E 
Sbjct: 16  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 75

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + DLI+ + E        E+   K        +    K D   
Sbjct: 76  KRAINRLMNRAASSAIGDVDLIIFVVEGTKWTEDDEMVLNKLRSAKAPVLLAINKIDNIK 135

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H               IS+  G+ +  L   ++  L       P    + +  
Sbjct: 136 EKEELLPHITELSQKFDFAEILPISAQRGKNVHILQKFVRQSLRQGEHHFPEEYVTDRSQ 195

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 196 RFMASEIIR 204


>gi|91794116|ref|YP_563767.1| GTP-binding protein Era [Shewanella denitrificans OS217]
 gi|91716118|gb|ABE56044.1| GTP-binding protein Era [Shewanella denitrificans OS217]
          Length = 334

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 81/250 (32%), Gaps = 36/250 (14%)

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLG--------EIIRNGYKIVILGHSNAGKSSLFNA 238
            + K  L      +  +   +++            E+   G  + I+G  N GKS+L N 
Sbjct: 1   MTKKTDLPASEAQQPSLDELLARMNQAAPKAKTQFEVTYCGM-VAIVGRPNVGKSTLLNK 59

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  + V+I +  P TTR  +          V   DT G+   +       + R       
Sbjct: 60  LLGQKVSITSKKPQTTRHRIMGIHTDGPSQVVFIDTPGLHIDEQRAINRLMNRA-AASSL 118

Query: 299 ADL--ILLLKEI---NSKKEISFPK------NIDFIFIGTKSD--------------LYS 333
           AD+  ++ + +        E+   K          +    K D              +  
Sbjct: 119 ADVSMVIFVVDAMNWTPDDEMVLKKIGYSDQERKVVLAINKVDNIKDKEALFPYLNEIAK 178

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
            +  +    IS+  G  ++ +++  +  L       P    + +   +  S+ VR   M 
Sbjct: 179 KFNFDEILPISATKGTNIQRILDMARESLPEGDFYFPEDYVTDRSQRFMASEIVREKLMR 238

Query: 394 SLNEKDCGLD 403
            L + +   D
Sbjct: 239 FLGD-ELPYD 247


>gi|57167682|ref|ZP_00366822.1| GTP-binding protein Era [Campylobacter coli RM2228]
 gi|305433189|ref|ZP_07402345.1| GTP-binding protein Era [Campylobacter coli JV20]
 gi|57020804|gb|EAL57468.1| GTP-binding protein Era [Campylobacter coli RM2228]
 gi|304443890|gb|EFM36547.1| GTP-binding protein Era [Campylobacter coli JV20]
          Length = 291

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 81/187 (43%), Gaps = 22/187 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +      +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMNGEDQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKE----ISFPKNIDFIFIGTKSD 330
           G+ E+   + +  I+     + + D+IL +  I +S K+    +S    +  I +  K D
Sbjct: 60  GLHESKATLNQFLIQSAIKSMGDCDVILFVASIFDSVKDYENFLSLNPKVPHIIVLNKVD 119

Query: 331 LYSTYTE--------------EYDHLISSFTGEGLEELINKIKSIL--SNKFKKLPFSIP 374
           L    T               +     S       + L+N++  +L     F    F  P
Sbjct: 120 LADNGTLLKKLNEYAKFSKYFKAILPYSCKKKNYQKPLLNELCKLLPEHEYFYDSEFLTP 179

Query: 375 SHKRHLY 381
           S ++ ++
Sbjct: 180 SSQKDIF 186


>gi|325478364|gb|EGC81479.1| ribosome biogenesis GTPase Era [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 293

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 92/204 (45%), Gaps = 21/204 (10%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +I++G+ + ++G +N GKS+L   +  + ++I+++   TTRD + I  + E   +   DT
Sbjct: 1   MIKSGF-VSVVGRANVGKSTLMEKILGEKISIISNKAQTTRDKIQIIYNDEDSQIIFLDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIG 326
            GI+   + +++  +  +   +  +D+I  + + + +         ++     +  I + 
Sbjct: 60  PGIQTPRNKLQERLLTFSEESLAESDIITFVVDDSEEIGRIDSEILDMLGKIKLPKILLI 119

Query: 327 TKSDL------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            K+DL            +  Y  +    IS+   + ++  +  IK +L          + 
Sbjct: 120 NKTDLADSERIAKIRANFRAYDFDRIIEISALEDKNIDIYLETIKEMLDFGPAYYDRDMI 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + K   + +S+ +R   + +L+E+
Sbjct: 180 TDKSERFIVSEIIREKALRNLSEE 203


>gi|309389847|gb|ADO77727.1| GTP-binding proten HflX [Halanaerobium praevalens DSM 2228]
          Length = 409

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 21/212 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
               + +   I  LK  +    +  K+    R    + I+G++NAGKS+L N LA  + +
Sbjct: 155 EVDRRRIEEKIHRLKESLKEIKASRKVQRSNRKDPMVAIVGYTNAGKSTLINNLAAAN-S 213

Query: 246 IVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
              D    T D      +L  G  + ISDT G             + T  E+ENADLIL 
Sbjct: 214 YTADKLFATLDSTMRKFELPVGQNIIISDTVGFISKLPHQLIASFRTTLEEIENADLILH 273

Query: 305 LKEINSK----------KEISFPKNI--DFIFIGTKSDLYSTYTE-------EYDHLISS 345
           L + ++           +EI   K      I +  K DL                  IS+
Sbjct: 274 LIDASNSDIEKNIKIVNQEIRKLKKSKAKVIKVFNKIDLIKKSKLADFKIIYPNSIFISA 333

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                +E +I+K+  ++ ++  ++   +P  K
Sbjct: 334 LKKINIESIIDKLNEVIKSEMIEIELDLPYEK 365


>gi|15642826|ref|NP_227867.1| iron(II) transport protein B [Thermotoga maritima MSB8]
 gi|281412111|ref|YP_003346190.1| ferrous iron transport protein B [Thermotoga naphthophila RKU-10]
 gi|4980537|gb|AAD35145.1|AE001692_2 iron(II) transport protein B [Thermotoga maritima MSB8]
 gi|281373214|gb|ADA66776.1| ferrous iron transport protein B [Thermotoga naphthophila RKU-10]
          Length = 669

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 19/168 (11%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  EI +   K+ + G  N GK+SLFNAL       V + PG T +        +GY + 
Sbjct: 8   RRSEISQKIVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTIN 66

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------------I 314
           + D  G          E I R +L   +ADL++L+ +  + ++                +
Sbjct: 67  LIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVIL 126

Query: 315 SFPKNIDFIFIGTKSDLYS--TYTEEYDHLISSFTGEGLEELINKIKS 360
           +     +    G K D Y    +        SS TGEGLEEL  KI  
Sbjct: 127 AMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVE 174


>gi|302380500|ref|ZP_07268965.1| GTP-binding protein Era [Finegoldia magna ACS-171-V-Col3]
 gi|302311443|gb|EFK93459.1| GTP-binding protein Era [Finegoldia magna ACS-171-V-Col3]
          Length = 294

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 79/199 (39%), Gaps = 23/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G SN GKS+L N +  + + I++D P TTR+ + +    E       DT GI+   
Sbjct: 7   VSVIGRSNVGKSTLLNRVLGEKLTIISDKPQTTRNKIQLIYTDENMQAIFLDTPGIQTPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD--- 330
           + +    +K +   +   D+I  + +   +         E     N   I +  K D   
Sbjct: 67  NKLGDYMLKVSMSTLNEVDVITYIVDTTEEIGKLDSEIIEKLRLVNTKIILLINKIDKIA 126

Query: 331 ------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 L   YT+    E    IS+  G+ +E  +  +++ L +          + +   
Sbjct: 127 SDKVNELVEMYTKVGIFEQIIPISALNGDNIEGYLTSLRNTLPDGPMYYDKDSVTDQPIR 186

Query: 381 YHLSQTVRYLEMASLNEKD 399
             + + +R  E A +N  D
Sbjct: 187 QIVQELIR--EKALINLSD 203


>gi|169824433|ref|YP_001692044.1| GTP-binding protein [Finegoldia magna ATCC 29328]
 gi|167831238|dbj|BAG08154.1| GTP-binding protein [Finegoldia magna ATCC 29328]
          Length = 294

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 79/199 (39%), Gaps = 23/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G SN GKS+L N +  + + I++D P TTR+ + +    E       DT GI+   
Sbjct: 7   VSVIGRSNVGKSTLLNRVLGEKLTIISDKPQTTRNKIQLIYTDENMQAIFLDTPGIQTPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD--- 330
           + +    +K +   +   D+I  + +   +         E     N   I +  K D   
Sbjct: 67  NKLGDYMLKVSMSTLNEVDVITYIVDTTEEIGKLDSEIIEKLRLVNTKIILLINKIDKIA 126

Query: 331 ------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 L   YT+    E    IS+  G+ +E  +  +++ L +          + +   
Sbjct: 127 SDKVNELVEMYTKVGIFEQIIPISALNGDNIEGYLTSLRNTLPDGPMYYDKDSVTDQPIR 186

Query: 381 YHLSQTVRYLEMASLNEKD 399
             + + +R  E A +N  D
Sbjct: 187 QIVQELIR--EKALINLSD 203


>gi|126643012|ref|YP_001085996.1| GTP-binding protein [Acinetobacter baumannii ATCC 17978]
 gi|184159512|ref|YP_001847851.1| GTPase [Acinetobacter baumannii ACICU]
 gi|260558115|ref|ZP_05830325.1| GTP-binding protein HflX [Acinetobacter baumannii ATCC 19606]
 gi|332873495|ref|ZP_08441446.1| GTP-binding protein HflX [Acinetobacter baumannii 6014059]
 gi|126388896|gb|ABO13394.1| GTP-binding protein [Acinetobacter baumannii ATCC 17978]
 gi|183211106|gb|ACC58504.1| GTPase [Acinetobacter baumannii ACICU]
 gi|260408388|gb|EEX01696.1| GTP-binding protein HflX [Acinetobacter baumannii ATCC 19606]
 gi|322509424|gb|ADX04878.1| GTPase [Acinetobacter baumannii 1656-2]
 gi|323519445|gb|ADX93826.1| GTPase [Acinetobacter baumannii TCDC-AB0715]
 gi|332738320|gb|EGJ69196.1| GTP-binding protein HflX [Acinetobacter baumannii 6014059]
          Length = 444

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 117/327 (35%), Gaps = 34/327 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W       +  I         E       + +  
Sbjct: 115 RARTHEGKLQVELAQLKHLSTRLIRGWSADFEQQKGGIGLR---GPGESQLETDRRLIRV 171

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  LK+ +         G   R       + ++G++NAGKS+LFN LAK DV    D  
Sbjct: 172 RITQLKDKLEKVHQTRMQGRAARQKASIPTVSLVGYTNAGKSTLFNILAKSDV-YAADQL 230

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     L+ +G   V ++DT G          E  K T  E   A L+L + + +S
Sbjct: 231 FATLDPTLRRLEWDGIGTVVLADTVGFVRNLQHDLVESFKATLEETLEATLLLHVIDSSS 290

Query: 311 KKEISFPK-----------NIDFIFIGTKSDLYSTYTEEY--------DHLISSFTGEGL 351
              +   +           +   + +  K DL     +             +S+ +G GL
Sbjct: 291 HDMLDQIEAVEGVLKEIGADAPVLRVYNKIDLSGEEAKIIYSEPHVPDRVYVSAHSGLGL 350

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           + L   ++  L  + +     +      L      +  ++    +++     ++  ++R+
Sbjct: 351 DLLRQAVQECLMGQLQHFSLVLKPAYGKLRTQLYALNVIQSEHYDDEG----LLHIDIRI 406

Query: 412 ASVSLGKITGCVD--VEQLLDIIFSKF 436
           A   L ++       ++++L    S+F
Sbjct: 407 APHKLEQLIRQAKLPIDEILGERASQF 433


>gi|54296963|ref|YP_123332.1| GTP-binding protein Era [Legionella pneumophila str. Paris]
 gi|53750748|emb|CAH12155.1| hypothetical protein lpp1004 [Legionella pneumophila str. Paris]
          Length = 311

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 72/189 (38%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N + ++ ++I +  P TTR  +        +     DT GI + +
Sbjct: 24  IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEGEFQFVYVDTPGIHQGN 83

Query: 282 DIVEKEGIKRT-FLEVENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSD--- 330
                  + +T    + + D+I  L +    K+       +     +  I +  K D   
Sbjct: 84  AKAINRMMNKTAISVLRDVDVIAFLVDGTHWKDEDEYVLNLIKQAKVPCILVVNKVDKIT 143

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      +   Y       +S+ TG  ++EL  K+K+ L       P    + +  
Sbjct: 144 DKTQLLPWIEQISQRYQFAAIIPLSAKTGLQVDELEGKLKTYLPEGPHLFPDDQFTDRSI 203

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 204 KFLCAELLR 212


>gi|325962851|ref|YP_004240757.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein TIGR00650 [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468938|gb|ADX72623.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein TIGR00650 [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 527

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 83/217 (38%), Gaps = 22/217 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+ +I++     + K     RN    + I G++NAGKSSL N L   
Sbjct: 269 ELDRRRIRTRMAKLRREIAAMKPARETKRANRRRNEVPSVAIAGYTNAGKSSLLNRLTDA 328

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G    ++DT G   +      E  + T  EV ++DLI
Sbjct: 329 GVLVENALFATLDPTVRKAETADGLGYTLADTVGFVRSLPTQLVEAFRSTLEEVADSDLI 388

Query: 303 LLLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTY-------TEEYDHLI 343
           L + + +                    + +  I +  K+D    +        E    ++
Sbjct: 389 LHVVDASHPDPEGQIAAVRKVFSEVDARKVPEIIVLNKADAADPFVVERLKQREPRHVVV 448

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           S+ TGEG+ EL+  I   +     KL   IP  +  L
Sbjct: 449 SARTGEGIPELLRAISEAIPRPSVKLELLIPYDRGDL 485


>gi|254821028|ref|ZP_05226029.1| GTPase [Mycobacterium intracellulare ATCC 13950]
          Length = 473

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 91/272 (33%), Gaps = 25/272 (9%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q    +  + G   S+  Q   +       +        + +      +E +  +  
Sbjct: 169 SLAQMEYMLPRLRGWGESMSRQAGGRAGGSGGGVGLRGPGETKIETDRRRIRERMAKLRR 228

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
              D+       +   +  +   I I+G++NAGKSSL NAL    V +V D    T +  
Sbjct: 229 EIKDMKQVRDTQRSRRLHSDVPSIAIVGYTNAGKSSLLNALTGAGV-LVQDALFATLEPT 287

Query: 259 TIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           T   + + G    ++DT G          E  + T  EV +ADL++ + + +    ++  
Sbjct: 288 TRRAEFDEGRSFVLTDTVGFVRHLPTQLVEAFRSTLEEVVDADLLVHVVDGSDVNPLAQI 347

Query: 318 KN----------------IDFIFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEEL 354
                                + +  K D  S                +S+ TGEG++ L
Sbjct: 348 NAVRQVVTDVIADHDGAPPPELLVVNKVDAASDLALAKLRHALPGAVFVSARTGEGIDAL 407

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
             +I  +       +   IP  +  L      
Sbjct: 408 RRRIAELAVPADTAVDVVIPYQRGDLVARLHA 439


>gi|169794678|ref|YP_001712471.1| GTP-binding protein [Acinetobacter baumannii AYE]
 gi|213157950|ref|YP_002320748.1| GTP-binding proten [Acinetobacter baumannii AB0057]
 gi|215482267|ref|YP_002324449.1| GTP-binding proten HflX [Acinetobacter baumannii AB307-0294]
 gi|301345845|ref|ZP_07226586.1| GTP-binding proten HflX [Acinetobacter baumannii AB056]
 gi|301512161|ref|ZP_07237398.1| GTP-binding proten HflX [Acinetobacter baumannii AB058]
 gi|301597149|ref|ZP_07242157.1| GTP-binding proten HflX [Acinetobacter baumannii AB059]
 gi|332851561|ref|ZP_08433538.1| GTP-binding protein HflX [Acinetobacter baumannii 6013150]
 gi|332867760|ref|ZP_08437832.1| GTP-binding protein HflX [Acinetobacter baumannii 6013113]
 gi|169147605|emb|CAM85466.1| GTP-binding protein [Acinetobacter baumannii AYE]
 gi|213057110|gb|ACJ42012.1| GTP-binding proten [Acinetobacter baumannii AB0057]
 gi|213988685|gb|ACJ58984.1| GTP-binding proten HflX [Acinetobacter baumannii AB307-0294]
 gi|332729906|gb|EGJ61238.1| GTP-binding protein HflX [Acinetobacter baumannii 6013150]
 gi|332733766|gb|EGJ64918.1| GTP-binding protein HflX [Acinetobacter baumannii 6013113]
          Length = 444

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 117/327 (35%), Gaps = 34/327 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W       +  I         E       + +  
Sbjct: 115 RARTHEGKLQVELAQLKHLSTRLIRGWSADFEQQKGGIGLR---GPGESQLETDRRLIRV 171

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  LK+ +         G   R       + ++G++NAGKS+LFN LAK DV    D  
Sbjct: 172 RITQLKDKLEKVHQTRMQGRAARQKASIPTVSLVGYTNAGKSTLFNILAKSDV-YAADQL 230

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     L+ +G   V ++DT G          E  K T  E   A L+L + + +S
Sbjct: 231 FATLDPTLRRLEWDGIGTVVLADTVGFVRNLQHDLVESFKATLEETLEATLLLHVIDSSS 290

Query: 311 KKEISFPK-----------NIDFIFIGTKSDLYSTYTEEY--------DHLISSFTGEGL 351
              +   +           +   + +  K DL     +             +S+ +G GL
Sbjct: 291 HDMLDQIEAVEGVLKEIGADAPVLRVYNKIDLSGEEAKIIYSEPHVPDRVYVSAHSGLGL 350

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           + L   ++  L  + +     +      L      +  ++    +++     ++  ++R+
Sbjct: 351 DLLRQAVQECLMGQLQHFSLVLKPAYGKLRTQLYALNVIQSEHYDDEG----LLHIDIRI 406

Query: 412 ASVSLGKITGCVD--VEQLLDIIFSKF 436
           A   L ++       ++++L    S+F
Sbjct: 407 APHKLEQLIRQAKLPIDEILGERASQF 433


>gi|239504133|ref|ZP_04663443.1| GTPase [Acinetobacter baumannii AB900]
          Length = 444

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 117/327 (35%), Gaps = 34/327 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W       +  I         E       + +  
Sbjct: 115 RARTHEGKLQVELAQLKHLSTRLIRGWSADFEQQKGGIGLR---GPGESQLETDRRLIRV 171

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  LK+ +         G   R       + ++G++NAGKS+LFN LAK DV    D  
Sbjct: 172 RITQLKDKLEKVHQTRMQGRAARQKASIPTVSLVGYTNAGKSTLFNILAKSDV-YAADQL 230

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     L+ +G   V ++DT G          E  K T  E   A L+L + + +S
Sbjct: 231 FATLDPTLRRLEWDGIGTVVLADTVGFVRNLQHDLVESFKATLEETLEATLLLHVIDSSS 290

Query: 311 KKEISFPK-----------NIDFIFIGTKSDLYSTYTEEY--------DHLISSFTGEGL 351
              +   +           +   + +  K DL     +             +S+ +G GL
Sbjct: 291 HDMLDQIEAVESVLKEIGADAPVLRVYNKIDLSGEEAKIIYSEPHVPDRVYVSAHSGLGL 350

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           + L   ++  L  + +     +      L      +  ++    +++     ++  ++R+
Sbjct: 351 DLLRQAVQECLMGQLQHFSLVLKPAYGKLRTQLYALNVIQSEHYDDEG----LLHIDIRI 406

Query: 412 ASVSLGKITGCVD--VEQLLDIIFSKF 436
           A   L ++       ++++L    S+F
Sbjct: 407 APHKLEQLIRQAKLPIDEILGERASQF 433


>gi|312144164|ref|YP_003995610.1| GTP-binding proten HflX [Halanaerobium sp. 'sapolanicus']
 gi|311904815|gb|ADQ15256.1| GTP-binding proten HflX [Halanaerobium sp. 'sapolanicus']
          Length = 410

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 79/212 (37%), Gaps = 21/212 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
               + +   I  LK  +    S   +    R      ++G++NAGKS++ N L+  + +
Sbjct: 155 EVDRRRIEKKIHRLKEKLKDIKSSRDVQRSQRKDPLAALVGYTNAGKSTIMNLLSGAN-S 213

Query: 246 IVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
            V D    T D     L+L  G  + +SDT G             + T  E+ENAD+IL 
Sbjct: 214 HVADQLFATLDSTMRQLELPVGRTIILSDTVGFISKLPHQLFASFRTTLEEIENADIILH 273

Query: 305 LKEINSKKEISFPK------------NIDFIFIGTKSDLYS-------TYTEEYDHLISS 345
           + + +  K     K                I I  K DL                  IS+
Sbjct: 274 VIDSSDPKMEKNIKVVEEELENLNSSKSKRIKIFNKIDLLKQSEINDLKLIYPDAIFISA 333

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
             G G ++L+ K+  I+     ++   +P  K
Sbjct: 334 LKGIGKDKLLAKLNQIIRQNMVEIELDLPYSK 365


>gi|319786414|ref|YP_004145889.1| GTP-binding proten HflX [Pseudoxanthomonas suwonensis 11-1]
 gi|317464926|gb|ADV26658.1| GTP-binding proten HflX [Pseudoxanthomonas suwonensis 11-1]
          Length = 444

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 96/304 (31%), Gaps = 36/304 (11%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W          I        + +      ++ L  +      +   
Sbjct: 125 LAQLKHLATRLVRGWTHLERQRGGSIGLRGPGETQLETDRRLLQKRLEQLQKRLEKVEVQ 184

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +   +     ++ ++G++NAGKS+LFNAL   D A   D    T D     + L G
Sbjct: 185 HTQMRRARVRSELPRVALVGYTNAGKSTLFNALTGAD-AYAADQLFATLDPTVRRISLPG 243

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--- 323
             V ++DT G             + T  E   ADL+L + +            +D +   
Sbjct: 244 GSVVLADTVGFVRDLPHELVAAFRSTLSEAREADLLLHVVDAADPLREERIAQVDSVLSE 303

Query: 324 ---------FIGTKSDLYST----------YTEEYDH----LISSFTGEGLEELINKIKS 360
                     +  K D                +E  H     +S+  G GLE L   +  
Sbjct: 304 VGAGELPQLLVFNKIDRIERAEPRHDHAAAAADEPGHRERVWLSARDGRGLELLQAALAQ 363

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASV 414
            L  +       +P     L      +  +     +E      ++  +L      RLA+ 
Sbjct: 364 RLDLQRATGELRLPPAAGRLRAQLHALGAVRSEQADEDGW---LLQLDLPRGEAERLAAR 420

Query: 415 SLGK 418
             G+
Sbjct: 421 EGGE 424


>gi|149926461|ref|ZP_01914722.1| GTP-binding protein Era [Limnobacter sp. MED105]
 gi|149824824|gb|EDM84038.1| GTP-binding protein Era [Limnobacter sp. MED105]
          Length = 298

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 73/192 (38%), Gaps = 25/192 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL--DLEGYL--VKISDTAGI 277
           I ++G  N GKS+L N +  + ++I +  P TTR  +   +   ++         DT G 
Sbjct: 9   IAVVGRPNVGKSTLMNGMIGEHLSITSSKPQTTRHRVLGVMTETIKDVPTQFIFVDTPGF 68

Query: 278 R-ETDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSD 330
           + +  + + K   +     + + ++IL + E       + K     PK +  + +  K D
Sbjct: 69  QTKHSNALNKTMNRAVLTALADVNVILWVIEQGKLTPADMKVLELCPKGVPLVAVVNKVD 128

Query: 331 LYSTYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           L     E              +    +S+   + L+ L   + ++L  +         + 
Sbjct: 129 LLEKKAEMLPFLQKVSGQRNFDAIVPLSAQAIKNLDALKEAVSALLPEQPFFYDEDTLTD 188

Query: 377 KRHLYHLSQTVR 388
           +   +  ++ +R
Sbjct: 189 RPEKFLAAERIR 200


>gi|240949697|ref|ZP_04754032.1| GTP-binding protein Era [Actinobacillus minor NM305]
 gi|257464705|ref|ZP_05629076.1| GTP-binding protein Era [Actinobacillus minor 202]
 gi|240295955|gb|EER46631.1| GTP-binding protein Era [Actinobacillus minor NM305]
 gi|257450365|gb|EEV24408.1| GTP-binding protein Era [Actinobacillus minor 202]
          Length = 300

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDLYS 333
              + +   +     + + DLI+ + E     E                +    K D   
Sbjct: 71  KRAINRLMNRAASSAIGDVDLIIFVVEGTKWTEDDEMVLNKLRAAKAPVVLAINKVDNIK 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H               IS+  G+ +  L   ++  L       P    + +  
Sbjct: 131 EKDELLPHITELSQKFDFAEILPISAQRGKNVHILQKFVRDSLREGVHHFPEEYVTDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|257455507|ref|ZP_05620739.1| GTP-binding protein HflX [Enhydrobacter aerosaccus SK60]
 gi|257447076|gb|EEV22087.1| GTP-binding protein HflX [Enhydrobacter aerosaccus SK60]
          Length = 456

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 117/317 (36%), Gaps = 29/317 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  ++   + L   W   L   +  I        + +      +  + 
Sbjct: 116 RARTYEGKLQVELAQLNHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLQVRVG 174

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +    + +    +QG+      +   I ++G++NAGKS+LFN L  +++    +    T
Sbjct: 175 QLKAKLDKVKQTRAQGRAKRQKSSVPTISLVGYTNAGKSTLFNTLTHENI-YAANQLFAT 233

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     +   G   V + DT G          E    T  E   ADL+L + + + +  
Sbjct: 234 LDPTLRSVSWSGVGKVVLVDTVGFVRHLPHELVEAFHATLEETLEADLLLHVIDSHREDM 293

Query: 314 -----------ISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLISSFTGEGLEEL 354
                            +  + +  K DL        YS   +     +S+    G+E+L
Sbjct: 294 HEQIAAVQSVLAEIDNQVPVLNVFNKIDLTGEPPHIGYSDKAKPNRVYVSAHEQLGIEQL 353

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
              ++ +L  + ++   ++P++   L H    +  +E  S +E      + A    ++  
Sbjct: 354 TLAVQQLLVGQLQRFELTLPANFGQLQHELHKLEVIEDLSYDETGQTK-LTA---MMSVD 409

Query: 415 SLGKITGCVD--VEQLL 429
            L ++ G      E++L
Sbjct: 410 KLKQLLGEFGIAPEEVL 426


>gi|110834491|ref|YP_693350.1| GTP-binding protein Era-like protein [Alcanivorax borkumensis SK2]
 gi|110647602|emb|CAL17078.1| GTP-binding protein Era homolog [Alcanivorax borkumensis SK2]
          Length = 310

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 74/204 (36%), Gaps = 24/204 (11%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           SQ    +  R G  + I+G  N GKS+L N L  + V+I +  P TTR  +   L  + Y
Sbjct: 7   SQPDNPQTTRCGM-VSIVGRPNVGKSTLMNHLIGQKVSITSRKPQTTRHRIHGILSRDNY 65

Query: 268 LVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNI 320
            +  +DT GI    +  + +   +     +   D+I ++ +       +       P+  
Sbjct: 66  QIVFADTPGIHTGQEKALNRAMNEAAVSTLFGVDVICMMVDAMKWTPADEHVLSLLPEGG 125

Query: 321 DFI--FIGTKSD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           D     I  K D              L   Y  +    +S+   + L EL   +   L  
Sbjct: 126 DVPVLLIINKVDNVDDKSALLPHIQSLSERYPFDAVIPVSALREQNLVELEKALVDRLQE 185

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVR 388
                     + +   + +++ +R
Sbjct: 186 GDFWYEEDQLTDRSLRFMVAEIIR 209


>gi|88797949|ref|ZP_01113536.1| GTP-binding protein Era [Reinekea sp. MED297]
 gi|88779146|gb|EAR10334.1| GTP-binding protein Era [Reinekea sp. MED297]
          Length = 302

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +      +   +   DT G+ R  
Sbjct: 14  VAIVGRPNVGKSTLMNHLLGQKISITSRKPQTTRHQILGIWTEDKTQMVFVDTPGMHRGQ 73

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK----NIDFIFIGTKSDLYS 333
           +  + +   K     + + D ++ + +      +      K        I +  K D   
Sbjct: 74  EKAINRAMNKAADTALTDIDAVIFVVDRTVFTDEDAWVLEKLKRSRAPVILVINKVDQLD 133

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  H               +S+  G  L+ L   + + +       P    + K  
Sbjct: 134 DKQSLLPHIEAMSEKFAFKEVIPVSALQGHNLDRLTESLSASMPAGLFHFPEDQITDKTQ 193

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  ++ +R   M  L  +
Sbjct: 194 RFMAAEIIREKIMRQLGAE 212


>gi|304413541|ref|ZP_07395014.1| GTP-binding protein [Candidatus Regiella insecticola LSR1]
 gi|304284384|gb|EFL92777.1| GTP-binding protein [Candidatus Regiella insecticola LSR1]
          Length = 310

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 11/150 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L NAL  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 12  VAIVGRPNVGKSTLLNALLGQKVSITSRKPQTTRHRIMGIHTEGAYQTIYIDTPGLHIEE 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK----NIDFIFIGTKSDLY- 332
              + +   +     + + +LI+ + E     +  E+   K    N   + +  K D   
Sbjct: 72  KRAINRLMNRAASSAIGDVELIIFVVEGTHWIADDEMVMNKLSHVNCPVLLVINKMDNVT 131

Query: 333 --STYTEEYDHLISSFTGEGLEELINKIKS 360
             +      D L       G+  +I ++  
Sbjct: 132 DKAKLLPHIDFLRKKINFIGILPVIAEVSE 161


>gi|261868616|ref|YP_003256538.1| GTP-binding protein Era [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413948|gb|ACX83319.1| GTP-binding protein Era [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 302

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 64/189 (33%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 13  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----------NIDFIFIG 326
              + +   +     + + +L++ + +    N   E+   K                 I 
Sbjct: 73  KRAINRLMNRAASSAISDVELVIFVVDGTHWNDDDEMVLNKLRKTKAPVVLAINKIDNIK 132

Query: 327 TKSDLYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL    TE             S+  G  +  L   ++  L       P    + +  
Sbjct: 133 NKDDLLPFITEISSKFNFADVVPISAEKGNNINVLEQIVRKSLRPGIHHFPEDYVTDRSQ 192

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 193 RFMASEIIR 201


>gi|148270008|ref|YP_001244468.1| ferrous iron transport protein B [Thermotoga petrophila RKU-1]
 gi|147735552|gb|ABQ46892.1| ferrous iron transport protein B [Thermotoga petrophila RKU-1]
          Length = 667

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 19/168 (11%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  EI +   K+ + G  N GK+SLFNAL       V + PG T +        +GY + 
Sbjct: 6   RRSEISQKIVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTIN 64

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------------I 314
           + D  G          E I R +L   +ADL++L+ +  + ++                +
Sbjct: 65  LIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVIL 124

Query: 315 SFPKNIDFIFIGTKSDLYS--TYTEEYDHLISSFTGEGLEELINKIKS 360
           +     +    G K D Y    +        SS TGEGLEEL  KI  
Sbjct: 125 AMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVE 172


>gi|107104042|ref|ZP_01367960.1| hypothetical protein PaerPA_01005115 [Pseudomonas aeruginosa PACS2]
          Length = 419

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 109/311 (35%), Gaps = 25/311 (8%)

Query: 115 RRAFENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
            RAFE   +D            + T E + ++ +  +    + L   W   L   +  I 
Sbjct: 80  ERAFECRVLDRTGLILDIFAQRARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIG 138

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
                  + +      +  +  I      + S   Q + G    +   + ++G++NAGKS
Sbjct: 139 LRGPGETQLETDRRLLRVRIRQIKQRLEKVRSQREQARRGRKRADIPAVSLVGYTNAGKS 198

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRT 292
           +LFNAL   +V    +    T D     L L+    V ++DT G          E  + T
Sbjct: 199 TLFNALTASEV-YAANQLFATLDPTLRRLQLDDLGPVVLADTVGFIRHLPHKLVEAFRAT 257

Query: 293 FLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTY----- 335
             E  NADL+L + +    +  +                +  + +  K DL  +      
Sbjct: 258 LEESSNADLLLHVIDAYEPERDAQVEQVLAVLGEIGANELPMLEVYNKVDLLPSVEPHIQ 317

Query: 336 ----TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                +     +S+ TGEGL+ L   I  +L          +P     L      +  ++
Sbjct: 318 RDDSGKPVRVWLSAQTGEGLDLLRQAIAELLGEDLFVGTLRLPQRLGRLRAQLFELGAVQ 377

Query: 392 MASLNEKDCGL 402
             + +E+ C L
Sbjct: 378 SEAHDEEGCTL 388


>gi|320010904|gb|ADW05754.1| GTP-binding protein Era [Streptomyces flavogriseus ATCC 33331]
          Length = 339

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 10/140 (7%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
            +   Q +     R G+    +G  NAGKS+L NAL  + VAI ++ P TTR  +   + 
Sbjct: 8   EAAAQQAENTAPHRAGF-ACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVH 66

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEI 314
            +   + + DT G+ +   ++ +             D+I      + K         KE+
Sbjct: 67  RDDAQLILVDTPGLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKFIVKEL 126

Query: 315 SFPKNIDFIFIGTKSDLYST 334
           +  K    I I TK+DL  +
Sbjct: 127 AGIKKTPKIAIITKTDLVES 146


>gi|315224466|ref|ZP_07866293.1| GTP-binding protein Era [Capnocytophaga ochracea F0287]
 gi|314945487|gb|EFS97509.1| GTP-binding protein Era [Capnocytophaga ochracea F0287]
          Length = 293

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   +  + + V  SDT GI +  
Sbjct: 7   VNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRIFGIVSGDDFQVVFSDTPGIIKPS 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPK----NIDFIFIGTKSDL--- 331
             ++   +       E+AD+++ + EI  K+   E  F +    ++  + +  K D    
Sbjct: 67  YALQASMMDFVKSAFEDADILIYMVEIGEKELKDEAFFKRINQLDVPVLLLINKVDTSDQ 126

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                              + IS+      E + N+I  +L       P    + K   +
Sbjct: 127 GVLEEQVAYWKEKVPRAEIYPISALRNFQTEVVFNRIIELLPESPAFFPKDQLTDKPERF 186

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 187 FVNEIIR 193


>gi|41408937|ref|NP_961773.1| hypothetical protein MAP2839c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397296|gb|AAS05156.1| HflX [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 482

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 97/285 (34%), Gaps = 25/285 (8%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q    +  + G   S+  Q   +       +        + +      +E +  +  
Sbjct: 178 SLAQMEYMLPRLRGWGESMSRQAGGRAGGSGGGVGLRGPGETKIETDRRRIRERMAKLRR 237

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
              D+       +   +  +   I I+G++NAGKSSL NAL    V +V D    T +  
Sbjct: 238 EIKDMKQVRDTQRSRRLHSDVPSIAIVGYTNAGKSSLLNALTGAGV-LVQDALFATLEPT 296

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEI 314
           T   +  +G    ++DT G          E  + T  EV +ADL++ +    ++N   +I
Sbjct: 297 TRRAEWDDGRAFVLTDTVGFVRHLPTQLVEAFRSTLEEVVDADLLVHVVDGSDVNPLAQI 356

Query: 315 SFPKNIDFIFIG-------------TKSDLYSTYTEEY-------DHLISSFTGEGLEEL 354
                +    I               K+D                   +S+ TG+G++ L
Sbjct: 357 DAVHQVISEVIADHHGDPPPELLAVNKTDAAGDVALAKLRHALPGAVFVSAATGDGIDGL 416

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             +I  +       +   IP H+  L         ++    N + 
Sbjct: 417 RRRIAELAVPAEAAVDVVIPYHRGDLVARLHADGRVQQEEHNAEG 461


>gi|224282624|ref|ZP_03645946.1| GTP-binding protein [Bifidobacterium bifidum NCIMB 41171]
 gi|310287084|ref|YP_003938342.1| GTP-binding protein [Bifidobacterium bifidum S17]
 gi|309251020|gb|ADO52768.1| GTP-binding protein [Bifidobacterium bifidum S17]
          Length = 521

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 97/259 (37%), Gaps = 29/259 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + + I  L+  I+      + K G   R G   I ++G++NAGKSSL N L   
Sbjct: 247 EMDRRVIRSRIARLRRQIAQMAPAREVKRGSRRRYGLPTIAVVGYTNAGKSSLTNRLTGS 306

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G L    DT G          E  K T  EV  AD+I
Sbjct: 307 AELVENALFATLDTAVRRARAKDGRLYAYVDTVGFVRNLPTQLIEAFKSTLEEVAEADII 366

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + + +                +I   + I  + +  K D     T E          L
Sbjct: 367 LHVVDGSHPDPFSQIDAVNDVLADIEGAEEIPRVVVFNKIDRIDAATRERLAALEPEASL 426

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY-HLSQ-----TVRYLEMASLN 396
           +S+ TGEGL++L+ +I+S+L      +   +P     L  H+ +     +V Y       
Sbjct: 427 VSAATGEGLDDLLRRIESMLPVPGVHVSALLPYDAGSLLSHVREYGNVDSVDYRADGIWI 486

Query: 397 EKDCGLDIIAENLRLASVS 415
           E D    + A+ +  A   
Sbjct: 487 EADVDRRLAAQIVDRAIDE 505


>gi|73667900|ref|YP_303915.1| GTP-binding protein [Methanosarcina barkeri str. Fusaro]
 gi|72395062|gb|AAZ69335.1| GTP-binding protein HflX [Methanosarcina barkeri str. Fusaro]
          Length = 436

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 28/216 (12%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN--GYK-IVILGHSNAGKSS 234
           F    D ++   +++   I  ++N++ S     +    +R+  G+  I + G++NAGKS+
Sbjct: 161 FMGLGDYEDSYEQDLKKRITRIRNELESAEKDDESLRALRHRKGFSLISLAGYTNAGKST 220

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           LFNA+  + V    ++  TT   +T  LDL G    ++DT G  E       +  K T  
Sbjct: 221 LFNAIVDESV-EAKNMLFTTLVPMTRALDLGGRKALLTDTVGFIEDLPHWLVDAFKSTLD 279

Query: 295 EVENADLILLLKEINSKKEISFPK-------------NIDFIFIGTKSDLYST------- 334
           E+  +DLILL+ + + K E    K              +  I +  K+DL          
Sbjct: 280 EIFLSDLILLVVDASEKPETILQKLSTSHDTLWDRIQGVPIITVLNKADLVDESKLDAIM 339

Query: 335 ----YTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
               Y       +S+  G G+  L  +I   L    
Sbjct: 340 EQIGYMAPNPVFVSAKKGTGMAALKAEIIKHLPPWC 375


>gi|256819059|ref|YP_003140338.1| GTP-binding protein Era [Capnocytophaga ochracea DSM 7271]
 gi|256580642|gb|ACU91777.1| GTP-binding protein Era [Capnocytophaga ochracea DSM 7271]
          Length = 293

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 7/124 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L NA   + ++I+T    TTR  +   +  + + V  SDT GI +  
Sbjct: 7   VNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRIFGIVSGDDFQVVFSDTPGIIKPS 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPK----NIDFIFIGTKSDLYST 334
             ++   +       E+AD+++ + EI  K+   E  F +    ++  + +  K D    
Sbjct: 67  YALQASMMDFVKSAFEDADILIYMVEIGEKELKDEAFFNRINQLDVPVLLLINKVDTSDQ 126

Query: 335 YTEE 338
              E
Sbjct: 127 NVLE 130


>gi|222085391|ref|YP_002543921.1| GTP-binding protein Era [Agrobacterium radiobacter K84]
 gi|221722839|gb|ACM25995.1| GTP-binding protein Era [Agrobacterium radiobacter K84]
          Length = 327

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 78/198 (39%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L    V+IV+    TTR ++      +   +   DT GI +  
Sbjct: 37  VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIFKPR 96

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKSDLY- 332
             +++  +   +   ++ADLI+LL +       +++  +   K      I +  K D   
Sbjct: 97  RRLDRAMVTSAWGGAKDADLIMLLIDSERGIRGDAEAILEGLKEVFQPKILVLNKIDRVR 156

Query: 333 ------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                            +   ++S+  G G ++++N +   L       P    S     
Sbjct: 157 REDLLALAAAANEKIAFQETFMVSAENGSGCDDVMNYLAKTLPEGPWYYPEDQISDLPMR 216

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+++
Sbjct: 217 QLAAEITREKLFLRLHQE 234


>gi|220927637|ref|YP_002504546.1| GTP-binding proten HflX [Clostridium cellulolyticum H10]
 gi|219997965|gb|ACL74566.1| GTP-binding proten HflX [Clostridium cellulolyticum H10]
          Length = 596

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 86/214 (40%), Gaps = 25/214 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKL----GEIIRNGYKIVILGHSNAGKSSLFNALAK 241
               + +   I  L+ ++  H+ + +          N   + I+G++NAGKS+L N    
Sbjct: 341 EVDRRHIRRRITGLEQEL-KHLEKRRQFLRSNRTSNNTPVVAIVGYTNAGKSTLLNRFCG 399

Query: 242 KDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             V  V D    T D     L L +G    + DT G          E  K T  E  +AD
Sbjct: 400 SSV-FVEDKLFATLDPSARQLTLSDGREAVLIDTVGFIRKLPHDLIEAFKSTLEEAVHAD 458

Query: 301 LILLLKEINSKK---EISFPKN---------IDFIFIGTKSDL------YSTYTEEYDHL 342
           ++L + + +++    +IS  +             I +  K DL       S+        
Sbjct: 459 MLLHVVDASNENVSMQISVVEKLLEELGASTKRTILVLNKQDLVQEDRRISSVGYSAVCE 518

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           IS+ TG G+E+L+ KI     ++ K++   +P +
Sbjct: 519 ISAVTGYGIEQLLEKITEGFMHQLKEVQLLVPYN 552


>gi|124265844|ref|YP_001019848.1| putative GTP-binding protein [Methylibium petroleiphilum PM1]
 gi|124258619|gb|ABM93613.1| putative GTP-binding protein [Methylibium petroleiphilum PM1]
          Length = 312

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 11/145 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL  + V+I +    TTR  +T     +       DT G +   
Sbjct: 23  VAIVGRPNVGKSTLLNALVGQKVSITSRKAQTTRHRITGIRSADAAQFVFVDTPGFQTRH 82

Query: 282 DIVEKEGIKRTFLE-----VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSD 330
            +     + R   +     + + D++L + E       ++K     P     + +  K D
Sbjct: 83  TVKGAGALNRNLNKTVQSVMGDVDVVLFVVEAGRFGLDDAKVLSLVPPGKPTLLVANKLD 142

Query: 331 LYSTYTEEYDHLISSFTGEGLEELI 355
           L     E    L S        E +
Sbjct: 143 LVRRRAELAPWLKSMQERHPFAEFV 167


>gi|218661715|ref|ZP_03517645.1| GTP-binding protein EngA [Rhizobium etli IE4771]
          Length = 244

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 18/141 (12%)

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK-EGIKRTFLEVEN 298
             K +A+V D PG TRD    +  L G    I DTAG+ E D+   +     +T   ++ 
Sbjct: 1   MGKKLALVDDTPGVTRDRRPGEARLMGLNFTIIDTAGLEEADEESLQGRMRAQTEAAIDE 60

Query: 299 ADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------- 342
           ADL L + +          +  E+   +    + +  KS+   + +  YD          
Sbjct: 61  ADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANKSEARGSDSGFYDAYTLGLGEPT 120

Query: 343 -ISSFTGEGLEELINKIKSIL 362
            IS+  GEG+ +L + I   +
Sbjct: 121 PISAEHGEGMLDLRDAIVEAI 141



 Score = 59.1 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 15/114 (13%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212
            +  L    ++ +   R++ + D+  ++  D+    ++    D   + +D          
Sbjct: 129 GMLDLRDAIVEAIGKDRAYAKEDVAVTDV-DIPPGENETDGEDEEPIYDD---------- 177

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
                   ++ I+G  NAGKS+L N    +D  +     G TRD ++++ D  G
Sbjct: 178 ----TKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRG 227


>gi|307609736|emb|CBW99247.1| hypothetical protein LPW_10281 [Legionella pneumophila 130b]
          Length = 295

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 73/189 (38%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N + ++ ++I +  P TTR  +      + +     DT GI + +
Sbjct: 8   IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEDEFQFVYVDTPGIHQGN 67

Query: 282 DIVEKEGIKRT-FLEVENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSD--- 330
                  + +T    + + D+I  L +    K+       +     +  I +  K D   
Sbjct: 68  AKAINRMMNKTAISVLRDVDVIAFLVDGTHWKDEDEYVLNLIKQAKVPCILVVNKVDKIT 127

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      +   Y       +S+ TG  ++EL  K+K+ L       P    + +  
Sbjct: 128 DKTQLLPWIEQISQRYQFAAIIPLSAKTGLQVDELEGKLKTYLPEGPHLFPDDQFTDRSI 187

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 188 KFLCAELLR 196


>gi|170725605|ref|YP_001759631.1| GTP-binding protein Era [Shewanella woodyi ATCC 51908]
 gi|169810952|gb|ACA85536.1| GTP-binding protein Era [Shewanella woodyi ATCC 51908]
          Length = 329

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 69/206 (33%), Gaps = 25/206 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +          V   DT G+  E 
Sbjct: 38  VAIVGRPNVGKSTLLNNLLGQKISITSKKPQTTRHRIMGIHTDAERQVVFIDTPGLHIEE 97

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK------NIDFIFIGTKSD- 330
              + +   +     +    L++ + +        E+   K          +    K D 
Sbjct: 98  KRAINRLMNRAAASSLAEVSLVIFVVDGMTWTDDDEMVLRKLQSRDDGRKTVLAVNKVDN 157

Query: 331 -------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                        L   +  +    IS+  G  ++ +++     +       P    + +
Sbjct: 158 IKDKEELFPYLEELSKKFPFDEILPISATKGTNVQRILDMSVESVPESPHFFPEDYVTDR 217

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLD 403
              +  S+ VR   M  L + +   D
Sbjct: 218 SQKFMASEIVREKLMRFLGD-ELPYD 242


>gi|315656846|ref|ZP_07909733.1| GTP-binding protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492801|gb|EFU82405.1| GTP-binding protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 524

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 78/207 (37%), Gaps = 23/207 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + + + +  L+ ++ +     +     R       + I+G++NAGKSSL N LA  
Sbjct: 251 ELDRRRIRSRMARLRRNLKALAPTREAKRASRKAGGIPAVAIVGYTNAGKSSLLNRLAGA 310

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           ++ +   +  T    +      EG    ++DT G          E  + T  E   ADLI
Sbjct: 311 NLLVHDALFATLDPSVRRAHTPEGREYTLADTVGFVRRLPTELVEAFRSTLEETAMADLI 370

Query: 303 LLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + + ++   ++               + I  + +  K D  S              + 
Sbjct: 371 LHVVDGSNPDPMAQVAAVDATLELVEGIEEIPVMMVVNKIDQASAPALALLRHSLPEAYY 430

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL 369
           +S+ TG+G+E L   I   L    +++
Sbjct: 431 VSARTGKGIEALQQSIADRLPWPGQRV 457


>gi|303251583|ref|ZP_07337757.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307252104|ref|ZP_07534003.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302649581|gb|EFL79763.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860404|gb|EFM92418.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 304

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +      + Y     DT G+  E 
Sbjct: 15  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + DLI+ + E        E+   K        +    K D   
Sbjct: 75  KRAINRLMNRAASSAIGDVDLIIFVVEGTKWTDDDEMVLNKLRSAKAPVVLAINKVDNIK 134

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H               IS+  G+ +  L   ++  L       P    + +  
Sbjct: 135 EKDELLPHITELSPKFDFAEILPISAQRGKNVHILQKIVRKSLREGGHHFPEEYVTDRSQ 194

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 195 RFMASEIIR 203


>gi|300784296|ref|YP_003764587.1| GTP-binding protein HflX [Amycolatopsis mediterranei U32]
 gi|299793810|gb|ADJ44185.1| GTP-binding protein HflX [Amycolatopsis mediterranei U32]
          Length = 482

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 91/252 (36%), Gaps = 34/252 (13%)

Query: 188 SSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV 244
             + +   +  L+ +I++   I + K G  + N    + I+G++NAGKSSL NAL    V
Sbjct: 220 DRRRINKRVAKLRREIAAMDTIRETKRGRRLANEVPSVAIVGYTNAGKSSLLNALTGAGV 279

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D  T      +G    ++DT G          +  + T  E  +ADL++
Sbjct: 280 -LVEDALFATLDPTTRRAQTPDGRGYTLTDTVGFVRHLPHQLVDAFRSTLEEAADADLLV 338

Query: 304 LLKEINSKK-------------EISFPKNIDFI---FIGTKSDLYSTYTEEY-------D 340
            + + +                EI+  +         +  K+D     +           
Sbjct: 339 HVVDGSDPAPEEQVSAVREVLGEITRKRKEPLPPELLVINKTDASDEVSLARLRHALAGS 398

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT------VRYLEMAS 394
             +S+ TG G+ EL+  I   L      +   +P  +  L   +          + E  +
Sbjct: 399 VQVSARTGAGIAELVEVIADRLPRPEVTVDVLVPYSRGELVARAHADGEVLEEEHAEDGT 458

Query: 395 LNEKDCGLDIIA 406
                   D+ A
Sbjct: 459 RLLVRVRPDLAA 470


>gi|255037604|ref|YP_003088225.1| GTP-binding protein Era [Dyadobacter fermentans DSM 18053]
 gi|254950360|gb|ACT95060.1| GTP-binding protein Era [Dyadobacter fermentans DSM 18053]
          Length = 308

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 73/195 (37%), Gaps = 24/195 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL--DLEGYLVKI--S 272
           R G+ + I+G  N GKS+L N L  + ++I+T    TTR  +   L  + E    ++  S
Sbjct: 16  RAGF-VSIIGKPNVGKSTLMNVLVGERMSIITSKAQTTRHRIIGILNGNHENIPFQLVYS 74

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIG 326
           DT G+ +    +    +      +E+AD++L + EI  K        +        + + 
Sbjct: 75  DTPGVIKPSYKLHDSMMTFVKGSLEDADVVLFVVEIGEKAAEHEVLPLLNRTQSPVVLVL 134

Query: 327 TKSDL-------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K DL              +         IS+     +  L + + + L           
Sbjct: 135 NKIDLSNEEEVKQKMQEWENEIHPAAIIPISALEKANIGTLFDAVVTRLPFHPPYFDEDE 194

Query: 374 PSHKRHLYHLSQTVR 388
            + K   +  S+ +R
Sbjct: 195 LTDKPERFFASEIIR 209


>gi|225570790|ref|ZP_03779813.1| hypothetical protein CLOHYLEM_06893 [Clostridium hylemonae DSM
           15053]
 gi|225160252|gb|EEG72871.1| hypothetical protein CLOHYLEM_06893 [Clostridium hylemonae DSM
           15053]
          Length = 424

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 106/295 (35%), Gaps = 35/295 (11%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           +S +E + ++ +  +     S    +   L+ +   I       ++ ++     K  +  
Sbjct: 116 ASTSEGKIQVELAQLK-YRQSRLTGFGKSLSRLGGGIGTRGPGEKKLEMDRRLIKGRIAQ 174

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +     D+  H    +            ++G++NAGKS+L NAL   D+ +  D    T 
Sbjct: 175 LNRELRDVKRHREVTREQRSRNQVPVAAVVGYTNAGKSTLLNALTGADI-LAEDKLFATL 233

Query: 256 DVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D  T +L L     V ++DT G          E  + T  E + AD+IL + +  + +  
Sbjct: 234 DPTTRELKLPSKQSVLLTDTVGFIRKLPHHLIEAFRSTLEEAKYADMILHVVDTANPQMD 293

Query: 315 SFP------------KNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELIN 356
                          K+   I +  K D          +  +Y   IS+ T EGL+EL  
Sbjct: 294 EQMHIVYETLRSLGVKDKPVITVFNKQDKEGAQRTVRDFQADYTVRISAKTTEGLDELKE 353

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            I+++L                    + Q   Y E A +       ++ AE  R 
Sbjct: 354 MIEAVLRG--------------QKVLIEQLYSYKEAAKIQLIRKYGELTAEEYRE 394


>gi|209695942|ref|YP_002263872.1| GTP-binding protein Era [Aliivibrio salmonicida LFI1238]
 gi|208009895|emb|CAQ80208.1| GTP-binding protein era [Aliivibrio salmonicida LFI1238]
          Length = 321

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 75/211 (35%), Gaps = 24/211 (11%)

Query: 202 DISSHISQGKLGEIIRNGYK--IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           D+ ++ S     E   N +   I I+G  N GKS+L N +  + ++I +  P TTR  + 
Sbjct: 8   DLDAYFSSEAKTESSDNQHCGFIAIVGRPNVGKSTLLNQILGQKISITSRKPQTTRHRIM 67

Query: 260 IDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEIS 315
                  Y     DT G+  E    + +   +     + + +L+L L +        E+ 
Sbjct: 68  GVDTEGDYQAIYIDTPGLHIEEKRAINRLMNRAASSSLSDVNLVLFLVDGTHWTPDDEMV 127

Query: 316 FPK----NIDFIFIGTKSDLYSTYTEEYDH--------------LISSFTGEGLEELINK 357
             K        + +  K D      +   H               IS+ +G  ++ +   
Sbjct: 128 LNKLRKAGFPTVLLVNKVDNVKDKNDVMAHLQTMTEKMDFVDVVPISAKSGSNVDVVQKL 187

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           ++  L       P    + +   +  S+ +R
Sbjct: 188 VRDHLPKAVHHFPEEYVTDRSQRFMASEIIR 218


>gi|332883260|gb|EGK03543.1| GTP-binding protein Era [Dysgonomonas mossii DSM 22836]
          Length = 293

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 78/187 (41%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G+ N GKS+L N L  + V+I+T    TTR  +   ++ + Y +  SDT G+   +
Sbjct: 7   VNIVGNPNVGKSTLMNLLVGEKVSIITSKAQTTRHRILGIVNTDEYQIVYSDTPGVLRPN 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--KEISFPKNI-----DFIFIGTKSDLYST 334
             +++  +  +   + +AD++L + ++  K  K   F K +       + +  K D  + 
Sbjct: 67  YKLQESMLNFSESALSDADVLLYMTDVVEKIDKNEEFLKKVQGVQAPVLLLINKIDQTNQ 126

Query: 335 YTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
              E               + IS+      + +  +I  ++            + +   +
Sbjct: 127 KELEALVLRWKELLPNAEIYPISALNKFNADVVKKRIIDLIPESPPYFEKDALTDRPARF 186

Query: 382 HLSQTVR 388
            +++ +R
Sbjct: 187 FVTEIIR 193


>gi|302335736|ref|YP_003800943.1| GTP-binding protein HflX [Olsenella uli DSM 7084]
 gi|301319576|gb|ADK68063.1| GTP-binding protein HflX [Olsenella uli DSM 7084]
          Length = 432

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 102/280 (36%), Gaps = 28/280 (10%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            + T   R          L          L   ++       F + E       + V + 
Sbjct: 123 HATTREGRLQVQLAQLQYLLPRLRGMWSHLVREQARGGIGSRFGQGESQLEVDRRLVRDR 182

Query: 196 ILFLKNDISSH--ISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           I  L+ ++       + +      +G +++ + G++NAGKS+L N L     A V D   
Sbjct: 183 ISCLRKELRRLEGRRKVQSKARWDSGVFRVALAGYTNAGKSTLLNRLTGAG-AYVKDELF 241

Query: 253 TTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS- 310
            T D  T  + L+ G  V ++DT G  +       E  K T  EV  ADL+LL+ + +  
Sbjct: 242 ATLDPTTRSMVLDAGRKVTVTDTVGFIQKLPTTLVESFKSTLAEVMAADLVLLVADASDG 301

Query: 311 --KKEISFPK---------NIDFIFIGTKSDLYSTYTEEY-------DHLISSFTGEGLE 352
             +KEI+  +             + +  K D                   IS+ TG G+ 
Sbjct: 302 NVRKEIAAVRRILGDISASETPTVVVFNKIDALDDEELALLRTGAPDAVPISALTGRGIP 361

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK----RHLYHLSQTVR 388
            L+ +I    +   + +   +P  +    R ++   + +R
Sbjct: 362 GLLYRIAEEAARGDEVITALVPYERGALLRQVHERCRVIR 401


>gi|293391847|ref|ZP_06636181.1| GTP-binding protein Era [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952381|gb|EFE02500.1| GTP-binding protein Era [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 302

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 64/189 (33%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 13  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK-----------NIDFIFIG 326
              + +   +     + + +L++ + +    N   E+   K                 I 
Sbjct: 73  KRAINRLMNRAASSAISDVELVIFVVDGTHWNDDDEMVLNKLRKTKAPVVLAINKIDNIK 132

Query: 327 TKSDLYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K DL    TE             S+  G  +  L   ++  L       P    + +  
Sbjct: 133 NKDDLLPFITEISSKFNFADVVPISAEKGNNINVLEQIVRKSLRPGIHHFPEDYVTDRSQ 192

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 193 RFMASEIIR 201


>gi|302754754|ref|XP_002960801.1| hypothetical protein SELMODRAFT_75698 [Selaginella moellendorffii]
 gi|300171740|gb|EFJ38340.1| hypothetical protein SELMODRAFT_75698 [Selaginella moellendorffii]
          Length = 330

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 24/191 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  + ++IVT  P TTR  +        Y + + DT G+    
Sbjct: 32  VALIGKPNVGKSTLLNGIIGQKLSIVTAKPQTTRHRILGICSGPNYQMILYDTPGVITKQ 91

Query: 282 DIVEKE-GIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFIFIGTKSD 330
                E  +K       N+D +LL+ +I    E          ++  K+   + +  K D
Sbjct: 92  MHKLDELMMKSVRSATINSDCLLLIADICHPPEQVLGTLDEGAVNLIKSKPTLLVLNKKD 151

Query: 331 LYSTYTEEYDHLI-------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                  +                  S+  G G+EE+   + S L       P  I S  
Sbjct: 152 KVKQSEIQKKQEWYEKNSGMDEVIPVSAKFGLGIEEVKQWLVSKLPLGPAYYPRDIVSEH 211

Query: 378 RHLYHLSQTVR 388
           +  + +S+  R
Sbjct: 212 QERFFVSEIFR 222


>gi|261345440|ref|ZP_05973084.1| GTP-binding protein Era [Providencia rustigianii DSM 4541]
 gi|282566487|gb|EFB72022.1| GTP-binding protein Era [Providencia rustigianii DSM 4541]
          Length = 302

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +      + Y +   DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGINTEDNYQIIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTHWTPDDEMVVNKLSSLRCPVILAINKIDNVV 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T    H               IS+  G+G++ +   +K  +       P    + +  
Sbjct: 131 DKTSLLPHIGMISQKMNFLDVVPISAEKGQGVDTIAKIVKQHIPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|166032804|ref|ZP_02235633.1| hypothetical protein DORFOR_02519 [Dorea formicigenerans ATCC
           27755]
 gi|166027161|gb|EDR45918.1| hypothetical protein DORFOR_02519 [Dorea formicigenerans ATCC
           27755]
          Length = 415

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 20/197 (10%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
              +  H    +            I+G++NAGKS+L NAL   D+ +  D    T D  T
Sbjct: 179 LKSVKQHREVTREKRAKSRIPVAAIVGYTNAGKSTLLNALTGADI-LAEDKLFATLDPTT 237

Query: 260 IDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP- 317
             L L  G  + ++DT G          +  K T  E + AD+IL + ++++ +      
Sbjct: 238 RSLKLPSGQEILLTDTVGFIRKLPHHLIDAFKSTLEEAKYADMILHVVDVSNPQADEQMF 297

Query: 318 -----------KNIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                      ++   I +  K D      +   +  +Y   IS+ T  GL +L+  I++
Sbjct: 298 TVYETLQGLKVQDKPIITVFNKQDRLEGIPVIRDFKADYAVSISAKTKAGLGDLLETIEA 357

Query: 361 ILSNKFKKLPFSIPSHK 377
           +L  +   +    P  +
Sbjct: 358 LLRQQKVYIEEVYPYSE 374


>gi|331003853|ref|ZP_08327345.1| GTP-binding protein HflX [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330412045|gb|EGG91442.1| GTP-binding protein HflX [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 415

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 114/293 (38%), Gaps = 36/293 (12%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++ +E + ++ +  +    + L G   + L+ +   I       ++ ++      E ++ 
Sbjct: 116 ATTSEGKIQVELAQLKFSAARLVG-LRNSLSRLGGGIGTRGPGEKKLEMDRRLIHERISQ 174

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +      + +H    +        + + I+G++NAGKS+L N L    + +  D    T 
Sbjct: 175 LKAELKKVENHRELIRKSRDENLAFNVAIVGYTNAGKSTLLNKLTDAGI-LAEDKLFATL 233

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D  T  L L  G  + ++DT G          E  K T  E + A+L++ + +  +++  
Sbjct: 234 DPTTRKLKLGSGQEILVTDTVGFIRKLPHHLIEAFKSTLEEAKYANLLIHMVDAANEEAT 293

Query: 315 SFPK------------NIDFIFIGTKSDLYSTYTE-------EYDHLISSFTGEGLEELI 355
           S               + D I +  K+DL     E       +    +S+ TGEG++EL 
Sbjct: 294 SQMLVVYDTLRSLDVVDKDIITVFNKTDLMEEGMELPRDFHADKVLKMSAKTGEGIDELK 353

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           N I+ IL              K+   +L     Y +   +       +I++E 
Sbjct: 354 NTIEDIL--------------KKQRVYLEHVFSYKDAGKIAVIRKFGEILSEE 392


>gi|227547539|ref|ZP_03977588.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239621149|ref|ZP_04664180.1| GTP-binding protein [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|227211949|gb|EEI79845.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239515610|gb|EEQ55477.1| GTP-binding protein [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 501

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 80/213 (37%), Gaps = 23/213 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   I  L+  I       + K G   R G   + ++G++NAGKSSL N L   
Sbjct: 244 EMDRRVIRTRIARLRRQIREMAPAREVKRGSRRRFGLPTVAVVGYTNAGKSSLTNRLTGS 303

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G      DT G          E  K T  EV  AD+I
Sbjct: 304 AELVGNALFATLDTAVRRAKTRDGRAYAYVDTVGFVRRLPTQLVEAFKSTLEEVAEADVI 363

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + + +                +I    +I  I +  K+D     T E          +
Sbjct: 364 LHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRILVFNKADQADEATRERLAALQPDAFI 423

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +S++TGEGL+EL   ++S+L      +   +P 
Sbjct: 424 VSAYTGEGLDELRTAVESLLPVPHVHVNALLPY 456


>gi|114564092|ref|YP_751606.1| GTP-binding protein Era [Shewanella frigidimarina NCIMB 400]
 gi|114335385|gb|ABI72767.1| GTP-binding protein Era [Shewanella frigidimarina NCIMB 400]
          Length = 334

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 73/215 (33%), Gaps = 28/215 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + V+I +  P TTR  +          +   DT G+   +
Sbjct: 43  VAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRIMGIHTDGPSQIIFIDTPGLHIEE 102

Query: 282 DIVEKEGIKRTFLEVENADL--ILLLKEI---NSKKEISFPK------NIDFIFIGTKSD 330
                  + R       AD+  ++ + +     +  E+   K      +   I    K D
Sbjct: 103 KRAINRLMNRA-AASSLADVAMVIFVVDGMTWTADDEMVLQKIQHRNDDRKIILAINKVD 161

Query: 331 --------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                         L   +  +    IS+  G  ++ +++  +  L       P    + 
Sbjct: 162 NIKDKESLFPYLTELAKKFDFDEILPISASKGTNVQRILDMARESLPEAPFYFPEDYVTD 221

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +   +  S+ VR   M  L + +   D     +  
Sbjct: 222 RSQRFMASEIVREKLMRFLGD-ELPYD-ATVEIEQ 254


>gi|329120636|ref|ZP_08249299.1| GTP-binding protein Era [Neisseria bacilliformis ATCC BAA-1200]
 gi|327460860|gb|EGF07194.1| GTP-binding protein Era [Neisseria bacilliformis ATCC BAA-1200]
          Length = 352

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 69/196 (35%), Gaps = 24/196 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R G+ I I+G  N GKS+L N L  + V+I +    TTR+ +T     +       DT 
Sbjct: 61  YRCGF-IAIVGRPNVGKSTLMNHLIGQKVSITSKKAQTTRNRVTGIYTDDTAQFVFVDTP 119

Query: 276 GIRETDDIVEKEGIKRTF-LEVENADLILLLK------EINSKKEISFPKNIDFIFIGTK 328
           G +        + + +     +   D ++ +       E +       PK+   I +  K
Sbjct: 120 GFQTDHRNALNDRLNQNVTEALSGVDAVVFVVEAMRFTEADRTVMKQLPKHTPVILVVNK 179

Query: 329 ----------------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                             + + +      ++S+  G  +  L+  +K  L       P  
Sbjct: 180 IDKDKAKDKTALQAFIDGIRAEFKFAACEVVSAKHGLRIANLLETLKPFLPEGIPLYPDD 239

Query: 373 IPSHKRHLYHLSQTVR 388
           + + K   +   + VR
Sbjct: 240 MVTDKSARFLAMEIVR 255


>gi|167772058|ref|ZP_02444111.1| hypothetical protein ANACOL_03432 [Anaerotruncus colihominis DSM
           17241]
 gi|167665856|gb|EDS09986.1| hypothetical protein ANACOL_03432 [Anaerotruncus colihominis DSM
           17241]
          Length = 303

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 36/196 (18%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL NAL  + VAIV+  P TTR  +T  L      +   DT G+ +  
Sbjct: 15  VAIVGRPNVGKSSLLNALVGEKVAIVSSKPQTTRTRITGVLTDGDTQLVFIDTPGLHKPR 74

Query: 282 DIVEKEGIKRT----------FLEVENADLILLLKEINSKKEISF-----PKNIDFIFIG 326
             + +  +++            L VE  D+I        K E S       + I  + + 
Sbjct: 75  TKLSEYMVRQVGDSVADVDVAVLVVEPGDVI-------QKAEQSLIDSFTAQRIPAVLVI 127

Query: 327 TKSD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            K D                  Y  E    +S+  G+G+  ++++++   +         
Sbjct: 128 NKIDTLAEKEKLMAQIALFMRAYAFEAVIPVSALHGDGVGNVLSELRRFAALSPFFFDAD 187

Query: 373 IPSHKRHLYHLSQTVR 388
             + +     +++ VR
Sbjct: 188 TLTDQPERVIVAEIVR 203


>gi|67921883|ref|ZP_00515399.1| Small GTP-binding protein domain [Crocosphaera watsonii WH 8501]
 gi|67856099|gb|EAM51342.1| Small GTP-binding protein domain [Crocosphaera watsonii WH 8501]
          Length = 533

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 108/260 (41%), Gaps = 37/260 (14%)

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEII-----------RNGYKIVILGHSNAGK 232
           +    ++    ++  ++  + +   +     ++           R   K+VI G  +AGK
Sbjct: 84  LPEQKTEAAQENLQAIRRQLETIQDKVAQKALLNRSQEITDNLNRGELKVVIFGTGSAGK 143

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETD-DIVEKEGI 289
           +SL NAL    V  V    GTT+   T  L L+G    + I+DT GI E   +  E+E +
Sbjct: 144 TSLVNALFGDIVGDVEATMGTTKIGETYSLKLKGISREILITDTPGILEAGIEGSERETL 203

Query: 290 KRTFLEVENADLILLLKEINSKK------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
            R       ADL+L + + + ++      EI        + I  K DLY+   E      
Sbjct: 204 ARQL--ATEADLLLFVVDNDLRQSEYNPLEILVNLGKRSLLIFNKIDLYTEEEE------ 255

Query: 344 SSFTGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                + LE+L  ++KSI++ K       K       + + +  L      ++  +   +
Sbjct: 256 ----NQILEQLKERVKSIIAEKDVISLSAKPQSITSQNGKKVQPLPNITPLIKRLAAILR 311

Query: 399 DCGLDIIAENLRLASVSLGK 418
             G D+IA+N+ L S  LG+
Sbjct: 312 AEGEDLIADNILLQSQRLGE 331


>gi|319898998|ref|YP_004159091.1| GTP-binding protein HflX [Bartonella clarridgeiae 73]
 gi|319402962|emb|CBI76513.1| GTP-binding protein HflX [Bartonella clarridgeiae 73]
          Length = 444

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 88/221 (39%), Gaps = 29/221 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + N I+ ++ ++ + +    L    R       I ++G++NAGKS+LFN L+  
Sbjct: 182 EADRRLLQNKIIRIRRELETVVKTRALHRAKRKKIPYPVIALVGYTNAGKSTLFNHLSDS 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V     +  T    L   +   G  V +SDT G             + T  EV  ADLI
Sbjct: 242 NVLAEDMLFATLDPTLRKIVLPHGQKVLLSDTVGFISNLPTHLIAAFRATLEEVIEADLI 301

Query: 303 LLLKEINSKKEISFPKN---------------IDFIFIGTKSDLYSTYTEEY-------- 339
           L +++++     +  ++                  + I  K D+   +            
Sbjct: 302 LHVRDVSDPDHYAHAQDVLKILSSLGVDINDMDHIVEIWNKIDVLDQHALGILQTNSKKL 361

Query: 340 ---DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                ++S+ TG+GL++L+  I+  +    + + F +  ++
Sbjct: 362 LNPALMMSALTGKGLKQLLALIEKKIFGDMQSVEFILKPNE 402


>gi|297626088|ref|YP_003687851.1| GTP-binding protein [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921853|emb|CBL56413.1| GTP-binding protein [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 316

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 78/204 (38%), Gaps = 29/204 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  NAGKS+L NAL    +AI +  P TTR  +   L      + I DT G
Sbjct: 15  RSGF-VCFVGRPNAGKSTLTNALVGSKIAITSSKPQTTRHAVRGVLHRADGQLIIIDTPG 73

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNIDFIFIG 326
           + +   ++++             D++ L+   +          + +     K    + I 
Sbjct: 74  LSKPRSLLQQRLNDLVRSTWSEVDVVALVFPADEHIGPGDIYLATQLAELAKPPTLVAIV 133

Query: 327 TKSDLYS------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           TK+DL S                    T  +    S+ +G  + E+ + + S++      
Sbjct: 134 TKTDLVSPERLAKHLLRVARLQDDLAITFAHILPCSARSGSQVGEVADVLLSLMPPGPDY 193

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEM 392
            P    + +     +++ +R   +
Sbjct: 194 YPDGEITDEPDETLVAELIREAAL 217


>gi|225848777|ref|YP_002728941.1| GTP-binding protein HflX [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644205|gb|ACN99255.1| GTP-binding protein HflX [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 369

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 103/257 (40%), Gaps = 26/257 (10%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T+    ++ +  +  +L  +Y Q   +L+ I   ++      +  +++  + K+ +N
Sbjct: 108 RAKTKQAKLQVELAYLQHQLPRVYNQKGKELSRIGGGMKTKGAGEKLGEIKTRAIKDRIN 167

Query: 195 DILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
            I     +I     Q +       N   + ++G++NAGKSSL N L K+D  I +D    
Sbjct: 168 KIKKELKEIEKQKKQQRKTREDNPNILNVALVGYTNAGKSSLLNRLTKRDTYI-SDQLFA 226

Query: 254 TRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           T D  T  +        V I+DT G  E       +    T  E E ADLIL + +I+  
Sbjct: 227 TLDTKTSFIHFPDINKRVIITDTVGFVEDMPQEIMDAFMTTLKETEEADLILHVIDISDD 286

Query: 312 -------------KEISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLISSFTGEGL 351
                        K++   +    I +  K D      E       E    +S+  G  +
Sbjct: 287 NWMLKKQTVEDVLKKLKLEEK-PVINVMNKVDKVIPSQEYLEPDESENTITVSATKGWNI 345

Query: 352 EELINKIKSILSNKFKK 368
           ++L + +K     K ++
Sbjct: 346 DKLFDILKKYAIKKGEE 362


>gi|212715540|ref|ZP_03323668.1| hypothetical protein BIFCAT_00438 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660907|gb|EEB21482.1| hypothetical protein BIFCAT_00438 [Bifidobacterium catenulatum DSM
           16992]
          Length = 496

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 82/213 (38%), Gaps = 23/213 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + + I  L+  I         K G   R G   + ++G++NAGKSSL N L   
Sbjct: 239 EMDRRVIRSRIAKLRKQIEQMAPARDVKRGARRRFGLPTVAVVGYTNAGKSSLTNRLTGS 298

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G      DT G          E  K T  EV  ADLI
Sbjct: 299 AELVENALFATLDTAVRRARAKDGRRYAYVDTVGFVRRLPTQLIEAFKSTLEEVAEADLI 358

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEYD-------HL 342
           + + + +                +I   + I  I +  K+D     T E         ++
Sbjct: 359 VHVVDGSHPDPFSQIDAVDDVLADIDGVETIPTIIVFNKADRMDEATRERIEALMPEAYI 418

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +S+F+G+G++EL  +++S+L      +   +P 
Sbjct: 419 VSAFSGDGVDELRMQVESMLPAPNVHVEALLPY 451


>gi|152967328|ref|YP_001363112.1| GTP-binding protein Era [Kineococcus radiotolerans SRS30216]
 gi|151361845|gb|ABS04848.1| GTP-binding protein Era [Kineococcus radiotolerans SRS30216]
          Length = 308

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   ++G  NAGKS+L NAL  + VAI +  P TTR  +   +      + + DT G
Sbjct: 13  RSGF-ACLVGRPNAGKSTLTNALVGQKVAITSSRPQTTRHTVRGVVHRPDAQLVLVDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           +     ++ +    R    +   D++ L    + K
Sbjct: 72  LHRPRTLLGQRLNDRVHETLAEVDIVALCVPADEK 106


>gi|313676771|ref|YP_004054767.1| GTP-binding protein hflx [Marivirga tractuosa DSM 4126]
 gi|312943469|gb|ADR22659.1| GTP-binding protein HflX [Marivirga tractuosa DSM 4126]
          Length = 392

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 98/278 (35%), Gaps = 38/278 (13%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           L    +++ + Q  L+       L     +    L   R          E+E   +   +
Sbjct: 118 LNRAQTAQAKTQVELARNQY---LLPRLTRMWTHLERQRGGTATRGGAGEKEIETD--KR 172

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            + N I  LK  ++    Q +     R    ++ I+G++N GKS+L   L+K D+ +  +
Sbjct: 173 IIRNTITKLKERLAKIEKQSRTQRKSRGKIVRVAIVGYTNVGKSTLMTRLSKSDI-LAEN 231

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
               T D     ++ E     +SDT G          E  K T  E+  AD+++ + +++
Sbjct: 232 KLFATVDSTVRKVNFEDIPFLLSDTVGFIRKLPTHLIESFKSTLDEIREADILIHVVDVS 291

Query: 310 SKKEISFPK------------NIDFIFIGTKSDLYSTY------------------TEEY 339
                                +   + +  K DL                       E+ 
Sbjct: 292 HPTLDDHISVVNQTLTDIDAGDKPTLLVFNKVDLLEEEEEISVEEKIKNLKNTYWNKEQN 351

Query: 340 DHLISSFTG-EGLEELINKIKSILSNKFKKLPFSIPSH 376
           D +  S T  E +EEL NK++ ++  K   +  +   +
Sbjct: 352 DVVFISATNKENIEELKNKLRKLVEAKHFTIFPNYLKN 389


>gi|197285742|ref|YP_002151614.1| GTP-binding protein Era [Proteus mirabilis HI4320]
 gi|227356256|ref|ZP_03840645.1| GTP-binding protein [Proteus mirabilis ATCC 29906]
 gi|194683229|emb|CAR43911.1| GTP-binding protein [Proteus mirabilis HI4320]
 gi|227163720|gb|EEI48636.1| GTP-binding protein [Proteus mirabilis ATCC 29906]
          Length = 302

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 73/199 (36%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTDGAYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E  +     E+   K        +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTNWTPDDEMVLNKLKSLRCPVLLAINKVDNVT 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T+   H               IS+  G  ++ +   +++ L       P    + +  
Sbjct: 131 DKTKLLPHIGFLSQQMDFLDVVPISAEKGMNVDTIAKIVRNCLPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 191 RFMASEIIREKLMRFLGEE 209


>gi|332853892|ref|XP_003316231.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like [Pan
           troglodytes]
          Length = 105

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 7   TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGL-DGRILDKG 64
           TIFA+S+G     I++IR SGP+       +   +  P  R ASLR       G  LD+ 
Sbjct: 35  TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94

Query: 65  LLIVFPS 71
           L++ FP 
Sbjct: 95  LVLWFPG 101


>gi|239826727|ref|YP_002949351.1| GTP-binding proten HflX [Geobacillus sp. WCH70]
 gi|239807020|gb|ACS24085.1| GTP-binding proten HflX [Geobacillus sp. WCH70]
          Length = 415

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 18/201 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
           ++I ++G++NAGKS+LFN L   D +   ++   T D LT  + L  GY   ++DT G  
Sbjct: 197 FQISLVGYTNAGKSTLFNRLTDAD-SFEENLLFATLDPLTRKITLPSGYTALLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIG 326
           +          + T  EV+ ADLIL + + ++    +  +            +I  + I 
Sbjct: 256 QDLPTTLVAAFRSTLEEVKEADLILHVVDSSNPDYYNHEQTVYELLDELGVSSIPIVTIY 315

Query: 327 TKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
            K D+    +   T+    +IS+F    L  L   I+  +  +      SIPS++  L  
Sbjct: 316 NKRDIAHRNFVPSTKTDAIIISAFNEHDLHRLRQFIEETMMKQMVHYHVSIPSNEGRLLA 375

Query: 383 LSQTVRYLEMASLNEKDCGLD 403
             +    L     NE+    +
Sbjct: 376 QLKAETILRELHYNEESGMYE 396


>gi|187251519|ref|YP_001876001.1| GTP-binding protein [Elusimicrobium minutum Pei191]
 gi|186971679|gb|ACC98664.1| GTP-binding conserved hypothetical protein [Elusimicrobium minutum
           Pei191]
          Length = 415

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 20/167 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
           ++ I+G++NAGKS+L N L ++      D    T D  T  + +  G  +  +DT G  +
Sbjct: 197 QVAIVGYTNAGKSTLLNTLTQETAVYADDKLFATLDPTTRRVKMPGGGQILFTDTVGFIQ 256

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGT 327
                     + T  EV  AD+IL +K+ +SK                  +NI    +  
Sbjct: 257 KLPHNLVSAFRATLEEVSEADVILHVKDASSKDISEQSRTVFKIIKDLGAQNIPMAEVFN 316

Query: 328 KSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFK 367
           K DL   Y              IS+   +G++EL+ KI+  L  K+ 
Sbjct: 317 KCDLLPHYPLAALKNANPGAVFISAKENKGIKELLKKIEETLLFKWH 363


>gi|307245401|ref|ZP_07527489.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307254356|ref|ZP_07536194.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258814|ref|ZP_07540546.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306853742|gb|EFM85959.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306862655|gb|EFM94611.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867165|gb|EFM99021.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 304

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +      + Y     DT G+  E 
Sbjct: 15  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + DLI+ + E        E+   K        +    K D   
Sbjct: 75  KRAINRLMNRAASSAIGDVDLIIFVVEGTKWTDDDEMVLNKLRAAKAPVVLAINKVDNIK 134

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H               IS+  G+ +  L   ++  L       P    + +  
Sbjct: 135 EKDELLPHITELSKKFDFAEILPISAQRGKNVHILQKIVRKSLREGGHHFPEEYVTDRSQ 194

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 195 RFMASEIIR 203


>gi|302804232|ref|XP_002983868.1| hypothetical protein SELMODRAFT_119375 [Selaginella moellendorffii]
 gi|300148220|gb|EFJ14880.1| hypothetical protein SELMODRAFT_119375 [Selaginella moellendorffii]
          Length = 330

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 24/191 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N +  + ++IVT  P TTR  +        Y + + DT G+    
Sbjct: 32  VALIGKPNVGKSTLLNGIIGQKLSIVTAKPQTTRHRILGICSGPNYQMILYDTPGVITKQ 91

Query: 282 DIVEKE-GIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFIFIGTKSD 330
                E  +K       N+D +LL+ +I    E          ++  K+   + +  K D
Sbjct: 92  MHKLDELMMKSVRSATINSDCLLLIADICHPPEQVLGTLDEGAVNLIKSKPTLLVLNKKD 151

Query: 331 LYSTYTEEYDHLI-------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                  +                  S+  G G+EE+   + S L       P  I S  
Sbjct: 152 KVKQSEIQKKQEWYEKNSGMDEVIPVSAKFGLGIEEVKQWLVSKLPLGPAYYPRDIVSEH 211

Query: 378 RHLYHLSQTVR 388
           +  + +S+  R
Sbjct: 212 QERFFVSEIFR 222


>gi|20092422|ref|NP_618497.1| GTP-binding protein [Methanosarcina acetivorans C2A]
 gi|19917678|gb|AAM06977.1| GTP-binding protein [Methanosarcina acetivorans C2A]
          Length = 353

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 100/255 (39%), Gaps = 29/255 (11%)

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
            Y     +        E    F    D ++   +++   I  ++N++ S     +     
Sbjct: 61  RYEVPRARAIVSLVKKEERAGFMGLGDYEDAYEQDLKKRISRIENELESAEKDDESLRAF 120

Query: 217 RNGYKIVIL---GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           R+     ++   G++NAGKS+LFNA+  + V    D   TT    T  LDL G    ++D
Sbjct: 121 RHRKGFSLVSFAGYTNAGKSTLFNAIVDESV-EAQDKLFTTLVPTTRALDLGGRKALLTD 179

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------------NI 320
           T G  E       +  K T  E+  +DLILL+ +++ K E    K              +
Sbjct: 180 TVGFIEELPHWLVDAFKSTLDEIFLSDLILLVVDVSEKPETILQKLSTSHDTLWDRIQGV 239

Query: 321 DFIFIGTKSDLYSTYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
             I +  K+DL      E               +S+    G++EL  +I   L   +   
Sbjct: 240 PVITVLNKTDLLEASELEAAMEEIGYMAPNPVFVSAKEKLGMKELKAEIIKHLP-AWSSY 298

Query: 370 PFSIPSHKRHLYHLS 384
            F++P+ ++ +  LS
Sbjct: 299 SFTLPNSEKGMSVLS 313


>gi|288942809|ref|YP_003445049.1| ferrous iron transport protein B [Allochromatium vinosum DSM 180]
 gi|288898181|gb|ADC64017.1| ferrous iron transport protein B [Allochromatium vinosum DSM 180]
          Length = 781

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 90/250 (36%), Gaps = 46/250 (18%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
            +R      + G+ N GKS+LFNAL         + PG T +     L+L+G  V++ D 
Sbjct: 14  RLRPPLTFALAGNPNCGKSALFNALTG-IRQTTGNWPGVTVERKEGSLELDGRKVRVIDL 72

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTK 328
            GI   D     E + R +L    ADLI+ + + ++ +             +  +     
Sbjct: 73  PGIYSLDASSLDEMVTRDYLLGREADLIVNVLDASNLERHLYLTVQLLEMGVPVLIALNM 132

Query: 329 SDLYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKK-------- 368
            D+      + D              + + + EGL EL  ++ ++   +           
Sbjct: 133 MDIARKRGIQIDTGALSEALGCPVVPLVAVSKEGLTELQARLLAVAEGREPAGMALTHGE 192

Query: 369 -LPFSIP-------------SHKRHLYHLSQTVRYLEMASLNEKDCGLD-I-IAENLRLA 412
            +  ++              +   H       ++ LE   + E   G + + +AE+LR  
Sbjct: 193 CVEAAVLELLPRLEGAGDGDTDTGHANARWLALKLLESDPIAEHAVGPETLGLAESLR-- 250

Query: 413 SVSLGKITGC 422
              + + TG 
Sbjct: 251 -QQIAERTGE 259


>gi|126208026|ref|YP_001053251.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae L20]
 gi|190149855|ref|YP_001968380.1| GTP-binding protein Era-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307256563|ref|ZP_07538344.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|307263178|ref|ZP_07544799.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|189037248|sp|A3MZR0|ERA_ACTP2 RecName: Full=GTPase Era
 gi|226741164|sp|B3GX86|ERA_ACTP7 RecName: Full=GTPase Era
 gi|126096818|gb|ABN73646.1| GTP-binding protein Era-like protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189914986|gb|ACE61238.1| GTP-binding protein Era-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306864973|gb|EFM96875.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306871540|gb|EFN03263.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 304

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +      + Y     DT G+  E 
Sbjct: 15  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + DLI+ + E        E+   K        +    K D   
Sbjct: 75  KRAINRLMNRAASSAIGDVDLIIFVVEGTKWTDDDEMVLNKLRSAKAPVVLAINKVDNIK 134

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H               IS+  G+ +  L   ++  L       P    + +  
Sbjct: 135 EKDELLPHITELSQKFDFAEILPISAQRGKNVHILQKIVRKSLREGVHHFPEEYVTDRSQ 194

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 195 RFMASEIIR 203


>gi|307249747|ref|ZP_07531726.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858255|gb|EFM90332.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 304

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +      + Y     DT G+  E 
Sbjct: 15  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + DLI+ + E        E+   K        +    K D   
Sbjct: 75  KRAINRLMNRAASSAIGDVDLIIFVVEGTKWTDDDEMVLNKLRAAKAPVVLAINKVDNIK 134

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H               IS+  G+ +  L   ++  L       P    + +  
Sbjct: 135 EKDELLPHITELSKKFDFAEILPISAQRGKNVHILQKIVRKSLREGGHHFPEEYVTDRSQ 194

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 195 RFMASEIIR 203


>gi|157374288|ref|YP_001472888.1| GTP-binding protein Era [Shewanella sediminis HAW-EB3]
 gi|157316662|gb|ABV35760.1| GTP-binding protein Era [Shewanella sediminis HAW-EB3]
          Length = 335

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 69/206 (33%), Gaps = 25/206 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +          V   DT G+  E 
Sbjct: 44  VAIVGRPNVGKSTLLNKLLGQKISITSKKPQTTRHRIMGIHTDGARQVVFIDTPGLHMEE 103

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK------NIDFIFIGTKSD- 330
              + +   +     +    L++ + +        E+   K          +    K D 
Sbjct: 104 KRAINRLMNRAAASSLAEVSLVIFVVDGMTWTDDDEMVLRKLQSRDDGRKTVLAINKVDN 163

Query: 331 -------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                        L   +  +    IS+  G  ++ +++     +       P    + +
Sbjct: 164 IKDKEALFPYLEELSKKFEFDEILPISATQGTNVQRILDMSVESVPESPHFFPEDYVTDR 223

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLD 403
              +  S+ VR   M  L + +   D
Sbjct: 224 SQKFMASEIVREKLMRFLGD-ELPYD 248


>gi|317486347|ref|ZP_07945177.1| GTP-binding protein Era [Bilophila wadsworthia 3_1_6]
 gi|316922417|gb|EFV43673.1| GTP-binding protein Era [Bilophila wadsworthia 3_1_6]
          Length = 311

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 82/200 (41%), Gaps = 32/200 (16%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
            + ++G  NAGKS+L NAL  + VAIVT  P TTR+ +   L  +   V   DT G+   
Sbjct: 9   WVALMGPPNAGKSTLTNALVGQKVAIVTAKPQTTRNRIVGILTQKDAQVIFMDTPGVHAL 68

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEIS------FPKNIDF 322
             +T   + K  ++  +     A+ I+L+ + +         +++++        +    
Sbjct: 69  RGQTRGQLGKIMVQSAWQSFAVANCIVLVIDGDLYLRKPDFMERDLAPLIQPLAEEERPV 128

Query: 323 IFIGTKSDLY--------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
           + +  K DL+                + +      S+    G+E+L+  I+S L     +
Sbjct: 129 VVVVNKVDLFHDKSRMLPLLESVAQMFPKAEIFPASALRRNGVEQLLELIRSHLPEGEAQ 188

Query: 369 LPFSIPSHKRHLYHLSQTVR 388
            P    S     +  ++ +R
Sbjct: 189 FPEDQLSTAPMKFMAAEIIR 208


>gi|126460749|ref|YP_001057027.1| small GTP-binding protein [Pyrobaculum calidifontis JCM 11548]
 gi|126250470|gb|ABO09561.1| small GTP-binding protein [Pyrobaculum calidifontis JCM 11548]
          Length = 385

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 81/202 (40%), Gaps = 29/202 (14%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLG--EIIRNGY-KIVILGHSNAGKSSLFNA 238
           E + +   + ++  +  +K  +        +      R+G  ++VI G+++AGK++LFN 
Sbjct: 145 EYIIDAYYRHMVKRMATIKRKLEEVRKNRAMHIQRRKRSGVPEVVITGYTSAGKTTLFNR 204

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  +D  +V   P  T +  +  LDL G  V I+DT G  +       E    T  EV  
Sbjct: 205 LTNEDK-LVDGRPFATLETYSRALDLWGKRVVITDTIGFIDDLPPFLIESFHSTLQEVTE 263

Query: 299 ADLILLLKEINSKKEISFPK--------------NIDFIFIGTKSD---------LYSTY 335
           AD++LL+ + +        K                  I +  K D         L S  
Sbjct: 264 ADVVLLVVDGSDPPGELSRKLETSMETLGEVGVSRDRVIPVVNKVDRIGIGRVRELRSVL 323

Query: 336 TE--EYDHLISSFTGEGLEELI 355
            +   +   IS+ TG G+E L 
Sbjct: 324 AKYFTWFIPISALTGFGIEALK 345


>gi|78777575|ref|YP_393890.1| GTP-binding protein Era [Sulfurimonas denitrificans DSM 1251]
 gi|78498115|gb|ABB44655.1| GTP-binding protein Era [Sulfurimonas denitrificans DSM 1251]
          Length = 300

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 20/162 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N+L  +++A+V+     TR      +      +   DT G+ E +
Sbjct: 15  VSLIGRPNAGKSTLMNSLLGENIAMVSQKANATRKRSNAIVMHNDTQIIFVDTPGLHERE 74

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPK-NIDFIFIGTKSDLYSTY 335
            ++ +  +      + + DLI+ L  I    E     +      +  I + +K D  S  
Sbjct: 75  KVLNQFMLDEALKAMGDCDLIVYLAPITDSIENYEKFLKLNNSKVKHIIVLSKIDQVSQD 134

Query: 336 TE--------------EYDHLISSFTGEGLEELINKIKSILS 363
                           E    ++     G ++L+  I  +L 
Sbjct: 135 KLFKKILQYNQFSDNFEALIPMAIPKKIGHKDLLETISKMLP 176


>gi|110597803|ref|ZP_01386086.1| Small GTP-binding protein domain:GTP-binding protein Era
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340528|gb|EAT59011.1| Small GTP-binding protein domain:GTP-binding protein Era
           [Chlorobium ferrooxidans DSM 13031]
          Length = 305

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 26/192 (13%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           +I+G  NAGKS+L N L    ++IVT  P TTR  +T     +   +   DT GI +   
Sbjct: 12  IIIGPPNAGKSTLLNELLDYKLSIVTPKPQTTRKKITGIYHNDKCQIIFLDTPGIMKPQQ 71

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEI-------------SFPKNIDFIFIGTKS 329
            + +  +      +++AD+++ L   + KKE                P     I +  KS
Sbjct: 72  KLHESMLGIIRETLKDADIVIALLPYSGKKEFFDREFAEELFSSWLKPAGKKIIAVLNKS 131

Query: 330 DLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           DL               T+       +S+  G  L  LI+ I+  L   +   P    S 
Sbjct: 132 DLVTEERQREAEAFVRKTWNPAAVLSVSALKGSNLPALIDTIQPYLPLNYPLYPEDTLST 191

Query: 377 KRHLYHLSQTVR 388
               + +S+ +R
Sbjct: 192 APERFFVSEIIR 203


>gi|117923594|ref|YP_864211.1| GTP-binding protein, HSR1-related [Magnetococcus sp. MC-1]
 gi|117607350|gb|ABK42805.1| GTP-binding protein, HSR1-related protein [Magnetococcus sp. MC-1]
          Length = 432

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 119/313 (38%), Gaps = 29/313 (9%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T     ++ +  +  + S L   W                   + +V     +E ++
Sbjct: 117 RARTREGIMQVELASLMYQQSRLVRSWTHLERQRGGVGLRGGPGERQIEVDRRLIRERIH 176

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +     ++    +  +        + + ++G++NAGKS+LFN L +  V +  D    T
Sbjct: 177 KLKKQLEEVERTRALQRQPRQDIPLFTVALVGYTNAGKSTLFNLLTRAGV-LAEDKLFAT 235

Query: 255 RDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     +DL +G  + +SDT G             K T  EV +AD++L + +++  + 
Sbjct: 236 LDPTMRAVDLPDGGRILLSDTVGFIRQLPHQLVAAFKATLEEVMSADMLLHVVDLSDPEW 295

Query: 314 ISFPK------------NIDFIFIGTKSD-------LYSTYTEEYDHLISSFTGEGLEEL 354
             + +            +   + +  K D       L           +S+ TGEG+E L
Sbjct: 296 ERYVESVNGVLQELEVQHTRTLTVYNKIDRLESRGILERELARGDTIGVSAQTGEGVEPL 355

Query: 355 INKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           +++++  +     +    +P    R L       ++   AS+ E   G D     + LA 
Sbjct: 356 LSELRRAVGRAMLRYEVILPVSDGRWL------AKFHAEASVVEVREGEDFTTLIVELAP 409

Query: 414 VSLGKITGCVDVE 426
             LG++ G V+ E
Sbjct: 410 AVLGRLQGEVERE 422


>gi|165975963|ref|YP_001651556.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|226741165|sp|B0BUA7|ERA_ACTPJ RecName: Full=GTPase Era
 gi|165876064|gb|ABY69112.1| GTP-binding protein [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 304

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +      + Y     DT G+  E 
Sbjct: 15  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + DLI+ + E        E+   K        +    K D   
Sbjct: 75  KRAINRLMNRAASSAIGDVDLIIFVVEGTKWTDDDEMVLNKLRAAKAPVVLAINKVDNIK 134

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H               IS+  G+ +  L   ++  L       P    + +  
Sbjct: 135 EKDELLPHITELSQKFDFAEILPISAQRGKNVHILQKIVRKSLREGVHHFPEEYVTDRSQ 194

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 195 RFMASEIIR 203


>gi|254232825|ref|ZP_04926152.1| GTP-binding protein hflX [Mycobacterium tuberculosis C]
 gi|124601884|gb|EAY60894.1| GTP-binding protein hflX [Mycobacterium tuberculosis C]
          Length = 495

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 96/280 (34%), Gaps = 25/280 (8%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q    +  + G   S+  Q   +       +        + +      +E +  +  
Sbjct: 190 SLAQMEYMLPRLRGWGESMSRQAGGRAGGSGGGVGLRGPGETKIETDRRRIRERMAKLRR 249

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
               +       +      +   I I+G++NAGKSSL NAL    V +V D    T +  
Sbjct: 250 DIRAMKQVRDTQRSRRRHSDVPSIAIVGYTNAGKSSLLNALTGAGV-LVQDALFATLEPT 308

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           T   +  +G  V ++DT G          E  + T  EV +ADL++ + + +    ++  
Sbjct: 309 TRRAEFGDGRPVVLTDTVGFVRHLPTQLVEAFRSTLEEVVHADLLVHVVDGSDGHPLAQI 368

Query: 318 KN----------------IDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGLEEL 354
                                + +  K D+ S        +       +S+ TG+G++ L
Sbjct: 369 DAVRQVISEVIADHDGDPPPELLVVNKVDVASDLMLAKLRHGLPGAVFVSARTGDGIDAL 428

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
             ++  ++      +   IP  +  L         ++ A 
Sbjct: 429 RRRMAELVVPADTAVDVVIPYDRGDLVARVHADGRIQQAE 468


>gi|294495130|ref|YP_003541623.1| ferrous iron transporter B [Methanohalophilus mahii DSM 5219]
 gi|292666129|gb|ADE35978.1| ferrous iron transport protein B [Methanohalophilus mahii DSM 5219]
          Length = 677

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 33/225 (14%)

Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           ++ E   NG  KIV++G+ N GKS LFN  +     IV++ PGTT ++   D  + G   
Sbjct: 14  QISETPSNGLEKIVLVGNPNVGKSVLFNHFSNS-YTIVSNYPGTTVEISKGDGTIAGKEY 72

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFI 323
           +I DT G+     I E+E + + ++  E+A + L + +  + + +          ++  I
Sbjct: 73  EIIDTPGMYSMLPITEEERVAQKYVLDEDAHVYLHVVDAKNLRRMLPLTIQLIEADVPLI 132

Query: 324 FIGTKSDLYSTYTEEYD------------HLISSFTGEGLEELINKI-------KSILSN 364
            +    D       E D                S TG GL+EL   I       K  + N
Sbjct: 133 LVLNMMDEAEERGVEIDTQRLAQRLGIPVVSTVSTTGRGLKELEETIANYKPTQKHFIPN 192

Query: 365 KFKKLPFSIPSHKRHLY-HLSQTVRYLEMASLNEKDCGLDIIAEN 408
             +++  +I      L        R L    L +     D+IA  
Sbjct: 193 YGEEIESAIEKTVSSLNSEYRVAKRALAQLLLQK-----DLIAFE 232


>gi|72161224|ref|YP_288881.1| small GTP-binding protein domain-containing protein [Thermobifida
           fusca YX]
 gi|71914956|gb|AAZ54858.1| Small GTP-binding protein domain [Thermobifida fusca YX]
          Length = 493

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 89/218 (40%), Gaps = 28/218 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK----IVILGHSNAGKSSLFNALAKKD 243
             + +   +  L+ ++ +H++  +  +  R   +    + I G++NAGKSSL N +    
Sbjct: 237 DRRRIHRRMAKLRREL-AHMAVAREVKRDRRRSRKVPAVAIAGYTNAGKSSLLNRITGAG 295

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V +   +  T    +      +G L  +SDT G          E  + T  EV  ADLIL
Sbjct: 296 VLVEDALFATLDPTVRRARTPDGRLFTLSDTVGFVRHLPHQLVEAFRSTLEEVTEADLIL 355

Query: 304 LLKE---INSKKEISFPK---------NIDFIFIGTKSD---------LYSTYTEEYDHL 342
            + +    + +++I+  +         +I  + +  K D         L + Y    +  
Sbjct: 356 HVVDGSHPDPEQQIASVRQVFAEIDATDIPELIVINKIDAADETQLRQLRTKYPGMVEV- 414

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            S+ TGEG+ EL+  I   L     ++   +P  +  L
Sbjct: 415 -SARTGEGIGELLQAIAEALPESEHEVTVLLPYERGDL 451


>gi|15609862|ref|NP_217241.1| GTP-binding protein HflX [Mycobacterium tuberculosis H37Rv]
 gi|31793897|ref|NP_856390.1| GTP-binding protein HflX [Mycobacterium bovis AF2122/97]
 gi|148662566|ref|YP_001284089.1| putative GTP-binding protein HflX [Mycobacterium tuberculosis
           H37Ra]
 gi|148823913|ref|YP_001288667.1| GTP-binding protein hflX [Mycobacterium tuberculosis F11]
 gi|215404689|ref|ZP_03416870.1| putative GTP-binding protein hflX [Mycobacterium tuberculosis
           02_1987]
 gi|215412530|ref|ZP_03421264.1| putative GTP-binding protein hflX [Mycobacterium tuberculosis
           94_M4241A]
 gi|215446977|ref|ZP_03433729.1| putative GTP-binding protein hflX [Mycobacterium tuberculosis T85]
 gi|218754460|ref|ZP_03533256.1| putative GTP-binding protein hflX [Mycobacterium tuberculosis GM
           1503]
 gi|219558733|ref|ZP_03537809.1| putative GTP-binding protein hflX [Mycobacterium tuberculosis T17]
 gi|253798194|ref|YP_003031195.1| GTP-binding protein hflX [Mycobacterium tuberculosis KZN 1435]
 gi|254365380|ref|ZP_04981425.1| GTP-binding protein hflX [Mycobacterium tuberculosis str. Haarlem]
 gi|289444267|ref|ZP_06434011.1| GTP-binding protein hflX [Mycobacterium tuberculosis T46]
 gi|289448380|ref|ZP_06438124.1| GTP-binding protein hflX [Mycobacterium tuberculosis CPHL_A]
 gi|289553491|ref|ZP_06442701.1| GTP-binding protein hflX [Mycobacterium tuberculosis KZN 605]
 gi|289570901|ref|ZP_06451128.1| GTP-binding protein hflX [Mycobacterium tuberculosis T17]
 gi|289575422|ref|ZP_06455649.1| GTP-binding protein hflX [Mycobacterium tuberculosis K85]
 gi|289746527|ref|ZP_06505905.1| GTP-binding protein HflX [Mycobacterium tuberculosis 02_1987]
 gi|289758853|ref|ZP_06518231.1| GTP-binding protein [Mycobacterium tuberculosis T85]
 gi|289762896|ref|ZP_06522274.1| GTP-binding protein hflX [Mycobacterium tuberculosis GM 1503]
 gi|298526194|ref|ZP_07013603.1| GTP-binding protein hflX [Mycobacterium tuberculosis 94_M4241A]
 gi|2292959|emb|CAB10901.1| PROBABLE GTP-BINDING PROTEIN HFLX [Mycobacterium tuberculosis
           H37Rv]
 gi|31619491|emb|CAD94929.1| PROBABLE GTP-BINDING PROTEIN HFLX [Mycobacterium bovis AF2122/97]
 gi|134150893|gb|EBA42938.1| GTP-binding protein hflX [Mycobacterium tuberculosis str. Haarlem]
 gi|148506718|gb|ABQ74527.1| putative GTP-binding protein HflX [Mycobacterium tuberculosis
           H37Ra]
 gi|148722440|gb|ABR07065.1| GTP-binding protein hflX [Mycobacterium tuberculosis F11]
 gi|253319697|gb|ACT24300.1| GTP-binding protein hflX [Mycobacterium tuberculosis KZN 1435]
 gi|289417186|gb|EFD14426.1| GTP-binding protein hflX [Mycobacterium tuberculosis T46]
 gi|289421338|gb|EFD18539.1| GTP-binding protein hflX [Mycobacterium tuberculosis CPHL_A]
 gi|289438123|gb|EFD20616.1| GTP-binding protein hflX [Mycobacterium tuberculosis KZN 605]
 gi|289539853|gb|EFD44431.1| GTP-binding protein hflX [Mycobacterium tuberculosis K85]
 gi|289544655|gb|EFD48303.1| GTP-binding protein hflX [Mycobacterium tuberculosis T17]
 gi|289687055|gb|EFD54543.1| GTP-binding protein HflX [Mycobacterium tuberculosis 02_1987]
 gi|289710402|gb|EFD74418.1| GTP-binding protein hflX [Mycobacterium tuberculosis GM 1503]
 gi|289714417|gb|EFD78429.1| GTP-binding protein [Mycobacterium tuberculosis T85]
 gi|298495988|gb|EFI31282.1| GTP-binding protein hflX [Mycobacterium tuberculosis 94_M4241A]
 gi|326904340|gb|EGE51273.1| GTP-binding protein hflX [Mycobacterium tuberculosis W-148]
 gi|328457967|gb|AEB03390.1| GTP-binding protein hflX [Mycobacterium tuberculosis KZN 4207]
          Length = 495

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 96/280 (34%), Gaps = 25/280 (8%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q    +  + G   S+  Q   +       +        + +      +E +  +  
Sbjct: 190 SLAQMEYMLPRLRGWGESMSRQAGGRAGGSGGGVGLRGPGETKIETDRRRIRERMAKLRR 249

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
               +       +      +   I I+G++NAGKSSL NAL    V +V D    T +  
Sbjct: 250 DIRAMKQVRDTQRSRRRHSDVPSIAIVGYTNAGKSSLLNALTGAGV-LVQDALFATLEPT 308

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           T   +  +G  V ++DT G          E  + T  EV +ADL++ + + +    ++  
Sbjct: 309 TRRAEFGDGRPVVLTDTVGFVRHLPTQLVEAFRSTLEEVVHADLLVHVVDGSDGHPLAQI 368

Query: 318 KN----------------IDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGLEEL 354
                                + +  K D+ S        +       +S+ TG+G++ L
Sbjct: 369 DAVRQVISEVIADHDGDPPPELLVVNKVDVASDLMLAKLRHGLPGAVFVSARTGDGIDAL 428

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
             ++  ++      +   IP  +  L         ++ A 
Sbjct: 429 RRRMAELVVPADTAVDVVIPYDRGDLVARVHADGRIQQAE 468


>gi|296106525|ref|YP_003618225.1| GTP-binding protein Era [Legionella pneumophila 2300/99 Alcoy]
 gi|295648426|gb|ADG24273.1| GTP-binding protein Era [Legionella pneumophila 2300/99 Alcoy]
          Length = 295

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 75/189 (39%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS+L N + ++ ++I +  P TTR  +      + +     DT GI + +
Sbjct: 8   IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEDEFQFVYVDTPGIHQGN 67

Query: 282 DIVEKEGIKRT-FLEVENADLILLLKEINSKKE-----ISFPK--NIDFIFIGTKSD--- 330
                  + +T    + + D+I  L +    K+     ++  K   +  I +  K D   
Sbjct: 68  AKAINRMMNKTAISVLRDVDVIAFLVDGTHWKDEDEYVLNLIKHAKVPCILVVNKVDKIT 127

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      +   Y       +S+ TG  ++EL  K+K+ L       P    + +  
Sbjct: 128 DKTQLLPWIEQISQRYQFAAIIPLSAKTGLQVDELEGKLKTYLPEGPHLFPDDQFTDRSI 187

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 188 KFLCAELLR 196


>gi|154173760|ref|YP_001408329.1| GTP-binding protein Era [Campylobacter curvus 525.92]
 gi|189037253|sp|A7GYN7|ERA_CAMC5 RecName: Full=GTPase Era
 gi|112803151|gb|EAU00495.1| GTP-binding protein Era [Campylobacter curvus 525.92]
          Length = 289

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 6/124 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R+G+ + I+G +NAGKSSL NAL  + +AIV+     TR  +   +  EG  +   DT 
Sbjct: 1   MRSGF-VSIIGRTNAGKSSLLNALLNEKIAIVSHKQNATRRKINGIVMNEGDQIIFVDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNIDFIFIGTKSD 330
           G+ E++ I+ K  I      + + D ++ +  +     + +K ++       I + +K D
Sbjct: 60  GLHESEKILNKLMINEAVKSMGDCDAMIFIASVHDDTSDYEKFLNLNPKKPHILVLSKVD 119

Query: 331 LYST 334
             S 
Sbjct: 120 EVSN 123


>gi|89094543|ref|ZP_01167481.1| GTP-binding protein Era [Oceanospirillum sp. MED92]
 gi|89081142|gb|EAR60376.1| GTP-binding protein Era [Oceanospirillum sp. MED92]
          Length = 311

 Score = 79.9 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 67/195 (34%), Gaps = 24/195 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  N GKS+L N +  + ++I +  P TTR  +          +   DT G
Sbjct: 17  RCGF-VAIVGRPNVGKSTLMNHILGQKLSITSKKPQTTRHQIMGIKTEGDLQIVYVDTPG 75

Query: 277 IRETD--DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGT 327
           + + D    + +   K     + + DLI+ + +  +  E                I    
Sbjct: 76  LHKDDGKKALNRYMNKAASDALRDVDLIVFIVDRTAWTEEDQMVLDKVKHARCPVILAVN 135

Query: 328 KSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D           +               S+  G  +E+L   I S +       P   
Sbjct: 136 KVDQLKDKASLLPQMQSHSERMEFAEMIPLSAKQGHNVEQLEELIASYMPKGMHHFPDDQ 195

Query: 374 PSHKRHLYHLSQTVR 388
            + K   +  ++ VR
Sbjct: 196 LTDKSSRFMAAEMVR 210


>gi|261368640|ref|ZP_05981523.1| GTP-binding protein HflX [Subdoligranulum variabile DSM 15176]
 gi|282569371|gb|EFB74906.1| GTP-binding protein HflX [Subdoligranulum variabile DSM 15176]
          Length = 427

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 87/232 (37%), Gaps = 15/232 (6%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++      + +  +     ++     + +      N   + ++G++N GKSSL NAL  +
Sbjct: 178 ELDRRHLHQRIEHLEGKLREMEKRRGETRRARQKNNVPVVALVGYTNVGKSSLLNALCGE 237

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            +    D+   T D     L L  G  V + DT G          E  K T  E   AD+
Sbjct: 238 QI-FEADMLFATLDPTARKLTLPSGLQVILVDTVGFVSRLPHHLVEAFKSTLEEAAFADV 296

Query: 302 ILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYD-HLISSFTG 348
           IL + + +  +                  +I  + +  K D  +    +    L S+ TG
Sbjct: 297 ILKVADASDPQAAEQLAVTDEVLGTLDCGDIPQLVVYNKCDAANLTAFDPAMLLTSAKTG 356

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
            GL EL+ ++   L+++ + +   +P  K  L  + ++   +      E   
Sbjct: 357 RGLPELLARLDEELAHRVRTIEVVLPYDKLALADILRSRGSVAEEEYREDGV 408


>gi|302388761|ref|YP_003824582.1| small GTP-binding protein [Thermosediminibacter oceani DSM 16646]
 gi|302199389|gb|ADL06959.1| small GTP-binding protein [Thermosediminibacter oceani DSM 16646]
          Length = 196

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 7/126 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+V++G  N GKS +FN L    V  V++ PGTT ++      + G + +I DT G+   
Sbjct: 33  KLVLVGTPNVGKSVIFNRLTGAYVT-VSNYPGTTVEIFRGTGRIGGEIFEIIDTPGMYSL 91

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFIGTKSDLYST 334
             I E+E + RT L  EN D+++ + +  + + +           +  + +    D    
Sbjct: 92  MPITEEERVTRTLLFNENFDIVVHVVDAKNIERMLSMTMQLKEAGLPVMLVVNMMDEAER 151

Query: 335 YTEEYD 340
              + D
Sbjct: 152 LGRKID 157


>gi|317125285|ref|YP_004099397.1| GTP-binding protein HflX [Intrasporangium calvum DSM 43043]
 gi|315589373|gb|ADU48670.1| GTP-binding protein HflX [Intrasporangium calvum DSM 43043]
          Length = 495

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 22/217 (10%)

Query: 186 NFSSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+ +I+        K     + G   + I G++NAGKSSL N L   
Sbjct: 239 ELDRRRINTRMAKLRREIADMKTHRDTKRSTRKKGGVPSVAIAGYTNAGKSSLLNRLTGA 298

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G    ++DT G   +      E  + T  EV +ADL+
Sbjct: 299 GVLVENQLFATLDTTVRRSETKDGREFTLTDTVGFVRSLPTHLVEAFRSTLEEVGDADLL 358

Query: 303 LLLKE---------INSKKEISF---PKNIDFIFIGTKSDLYSTYT-------EEYDHLI 343
           L + +         I + +E+       ++  + +  K+D+            E++   +
Sbjct: 359 LHVVDGSHPDPEGQITAVREVLADVEAADVKEVIVVNKADIADPDVLDRIRRHEKHSIAV 418

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           S+ TG G++ELI+ I   L     ++   +P H+  L
Sbjct: 419 SARTGAGIQELIDLIARELPKPDIEVDVLVPYHRGDL 455


>gi|307260993|ref|ZP_07542675.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869295|gb|EFN01090.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 304

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +      + Y     DT G+  E 
Sbjct: 15  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + DLI+ + E        E+   K        +    K D   
Sbjct: 75  KRAINRLMNRAASSAIGDVDLIIFVVEGTKWTDDDEMVLNKLRSAKAPVVLAINKVDNIK 134

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H               IS+  G+ +  L   ++  L       P    + +  
Sbjct: 135 EKDELLPHITELSQKFDFAEILPISAQRGKNVHILQKIVRKSLREGVHHFPEEYVTDRSQ 194

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 195 RFMASEIIR 203


>gi|298505484|gb|ADI84207.1| ferrous iron transport protein B [Geobacter sulfurreducens KN400]
          Length = 663

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 22/172 (12%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
                G + R   K+ ++G+ N GKS LFNAL    VA V++ PGT+ +V       EG 
Sbjct: 13  DGAPAGAVTR---KVALVGNPNVGKSVLFNALTGAYVA-VSNYPGTSVEVSRGAASFEGG 68

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNID 321
             +I DT G+     I E+E + R  L  E  D++L + +  + + +           + 
Sbjct: 69  SWEIIDTPGMYSILPITEEERVAREILLTERPDVVLHVLDARNLERMLVMTLQLVEAGLP 128

Query: 322 FIFIGTKSDLYSTYTEEYDHL------------ISSFTGEGLEELINKIKSI 361
            I +    D       E D               ++    GL E+   I S 
Sbjct: 129 VILVVNIMDEAERMGLEIDIPLLQEKLGIPVIGAATAKKRGLPEIRKAIASC 180


>gi|311113256|ref|YP_003984478.1| GTP-binding protein [Rothia dentocariosa ATCC 17931]
 gi|310944750|gb|ADP41044.1| GTP-binding protein [Rothia dentocariosa ATCC 17931]
          Length = 549

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 22/213 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKK 242
               + +   +  LK +I++     +   + R   ++    I G++NAGKSSL N L   
Sbjct: 267 EMDRRRLRARMAKLKREIAAMAPARETKRLSRKRNRVPSVAIAGYTNAGKSSLLNRLTDA 326

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G    +SDT G   +      E  + T  EV +AD+I
Sbjct: 327 GVLVENALFATLDPTVRKAQTPDGIGYTLSDTVGFVRSLPTQLVEAFRSTLEEVADADVI 386

Query: 303 LLLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHLI 343
           L + + +                    + I  I    K+D    +  E          ++
Sbjct: 387 LHVVDASHPDPEGQIRAVREVIADLDARRIPEIIALNKADAADPFILERMRQRESNHVIV 446

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           S+ TGEG++EL  KI   +     ++   IP +
Sbjct: 447 SARTGEGIDELKQKIADTIPRPSLEVKLLIPYN 479


>gi|111018248|ref|YP_701220.1| GTP-binding protein Era [Rhodococcus jostii RHA1]
 gi|110817778|gb|ABG93062.1| GTP-binding protein [Rhodococcus jostii RHA1]
          Length = 305

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 81/218 (37%), Gaps = 26/218 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    +AI +  P TTR  +   +  +   + + DT G
Sbjct: 7   RSGF-VCFVGRPNTGKSTLTNALVGSKIAITSSRPQTTRHTIRGIVHRDHAQLILVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIG 326
           +     ++ +             D+I L    + K          +          I I 
Sbjct: 66  LHRPRTLLGQRLNDLVRDTYSEVDVICLCIPADEKIGPGDRWIVQQVRQIAPKTTLIGIV 125

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D  S                 E     +S+ +GE +E L++ + S +       P  
Sbjct: 126 TKIDKVSKDMVGQQLLAVSKLLGPEADVVPVSAASGEQVEVLVDVLASKMEEGPAFYPDG 185

Query: 373 IPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL 409
             + +     +++ +R   +  L +E    L ++ E +
Sbjct: 186 ELTDEPEETLMAELIREAALEGLGDELPHSLAVVIEEI 223


>gi|296283698|ref|ZP_06861696.1| GTP-binding protein Era [Citromicrobium bathyomarinum JL354]
          Length = 292

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 26/205 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL----DLEGYLVKISDTAGIRE 279
           +LG  NAGKS+L NAL  + VAIV+    TTR  +        D     + + DT GI  
Sbjct: 1   MLGAPNAGKSTLVNALVGQKVAIVSAKAQTTRARMLGIALHENDDANTQMILVDTPGIFA 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE--------INSKKEISFPKNIDFIFIGTKSD- 330
               +++  +   +   E+AD +LLL +        +    E    +    I +  K D 
Sbjct: 61  PRRRLDRAMVSAAWEGAESADAVLLLVDPIKQRRHELEPLIEQLAQRPEKKILVLNKVDI 120

Query: 331 ------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                       L +       + IS+ +G+G+ EL + + + +       P    S   
Sbjct: 121 AKKEPLLALAQELSTKVDFAEIYFISALSGDGVTELKDALAAEMPEGEWMYPEDQVSDAS 180

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLD 403
                ++  R      L+E +   D
Sbjct: 181 ERLLATEITREQLYRQLHE-ELPYD 204


>gi|170289148|ref|YP_001739386.1| small GTP-binding protein [Thermotoga sp. RQ2]
 gi|238688853|sp|B1LBK5|ENGB_THESQ RecName: Full=Probable GTP-binding protein EngB
 gi|170176651|gb|ACB09703.1| small GTP-binding protein [Thermotoga sp. RQ2]
          Length = 195

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 26/170 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRE 279
           +  +G SN GKSSL NAL  + VA V+  PG TR +    ++ + Y V +     A + +
Sbjct: 26  VAFVGRSNVGKSSLLNALFNRKVAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSK 85

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSD- 330
            + ++ K  ++  F    +  ++ LL +     +      I + K  NI F  + TK D 
Sbjct: 86  KERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDFMMIEWMKSLNIPFTIVLTKMDK 145

Query: 331 ---------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                          ++S Y E      SS TGEG+ EL++ I ++L   
Sbjct: 146 VKMSERAKKLEEHRKVFSRYGEYTIIPTSSVTGEGISELLDLISTLLKEN 195


>gi|15668746|ref|NP_247545.1| ferrous iron transport protein FeoB [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2498377|sp|Q57986|FEOB_METJA RecName: Full=Ferrous iron transport protein B homolog
 gi|1591272|gb|AAB98557.1| ferrous iron transport protein B (feoB) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 668

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 76/187 (40%), Gaps = 20/187 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS++FNAL  ++V I  + PG T +    + +  G   K+ D  G+  
Sbjct: 4   YEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                  E I R ++  E  DL++ + +  + +              + +    K DL  
Sbjct: 63  LTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAK 122

Query: 334 TYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           +   E D               S+    G+E+L   I SI     K      P+ + ++ 
Sbjct: 123 SLGIEIDVDKLEKILGVKVVPLSAAKKMGIEDLKKAI-SIAVKDKKTAEIKYPNFEPYIK 181

Query: 382 HLSQTVR 388
            ++  ++
Sbjct: 182 KITSILQ 188


>gi|311063949|ref|YP_003970674.1| GTP-binding protein HflX [Bifidobacterium bifidum PRL2010]
 gi|313139783|ref|ZP_07801976.1| GTPase [Bifidobacterium bifidum NCIMB 41171]
 gi|310866268|gb|ADP35637.1| HflX GTP-binding protein [Bifidobacterium bifidum PRL2010]
 gi|313132293|gb|EFR49910.1| GTPase [Bifidobacterium bifidum NCIMB 41171]
          Length = 500

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 97/259 (37%), Gaps = 29/259 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + + I  L+  I+      + K G   R G   I ++G++NAGKSSL N L   
Sbjct: 226 EMDRRVIRSRIARLRRQIAQMAPAREVKRGSRRRYGLPTIAVVGYTNAGKSSLTNRLTGS 285

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G L    DT G          E  K T  EV  AD+I
Sbjct: 286 AELVENALFATLDTAVRRARAKDGRLYAYVDTVGFVRNLPTQLIEAFKSTLEEVAEADII 345

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + + +                +I   + I  + +  K D     T E          L
Sbjct: 346 LHVVDGSHPDPFSQIDAVNDVLADIEGAEEIPRVVVFNKIDRIDAATRERLAALEPEASL 405

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY-HLSQ-----TVRYLEMASLN 396
           +S+ TGEGL++L+ +I+S+L      +   +P     L  H+ +     +V Y       
Sbjct: 406 VSAATGEGLDDLLRRIESMLPVPGVHVSALLPYDAGSLLSHVREYGNVDSVDYRADGIWI 465

Query: 397 EKDCGLDIIAENLRLASVS 415
           E D    + A+ +  A   
Sbjct: 466 EADVDRRLAAQIVDRAIDE 484


>gi|296129409|ref|YP_003636659.1| GTP-binding proten HflX [Cellulomonas flavigena DSM 20109]
 gi|296021224|gb|ADG74460.1| GTP-binding proten HflX [Cellulomonas flavigena DSM 20109]
          Length = 505

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 86/218 (39%), Gaps = 23/218 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+ +I++     Q K     RN    + I G++NAGKSSL N L   
Sbjct: 247 ELDRRRIRTRMAKLRREIAAMEPARQTKRASRRRNAIPSVAIAGYTNAGKSSLLNRLTHA 306

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G +  ++DT G          E  + T  EV +ADLI
Sbjct: 307 GVLVENALFATLDPTVRRAEAADGRVYTLADTVGFVRHLPHQLVEAFRSTLEEVADADLI 366

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYT-------EEYDHL 342
           L + +                  +I    ++  I +  K+DL +          E +  +
Sbjct: 367 LHVVDAAHPDPEGQIAAVRHVFADIPGAMDVPEIIVLNKADLAAPEAVARLRSREVHSIV 426

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++EL   I   L     ++   +P  +  L
Sbjct: 427 VSAHTGEGIDELSALIADQLPRPGVQVEVVVPYTRGDL 464


>gi|163750601|ref|ZP_02157838.1| GTP-binding protein Era [Shewanella benthica KT99]
 gi|161329596|gb|EDQ00587.1| GTP-binding protein Era [Shewanella benthica KT99]
          Length = 335

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 70/206 (33%), Gaps = 25/206 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +     +    V   DT G+  + 
Sbjct: 44  VAIVGRPNVGKSTLLNKLLGQKISITSKKPQTTRHRIMGIHTVAERQVVFIDTPGLHMDE 103

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK------NIDFIFIGTKSD- 330
              + +   +     +    L++ + +        ++   K          +    K D 
Sbjct: 104 RRAINRLMNRAAASSLAEVSLVIFVVDGMTWTEDDDLVLRKLQSRDDGRKTVLAVNKVDN 163

Query: 331 -------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                        L   +  +    IS+  G  ++ +++     L       P    + +
Sbjct: 164 IKNKELLFPYLEALSKKFPFDEILPISATKGTNVQRILDMSIDSLPEAAHFFPEDYVTDR 223

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLD 403
              +  S+ VR   M  L + +   D
Sbjct: 224 SQKFMASEIVREKLMRFLGD-ELPYD 248


>gi|159232408|emb|CAM96592.1| putative GTPase [Streptomyces ambofaciens]
          Length = 481

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 99/281 (35%), Gaps = 29/281 (10%)

Query: 130 SLADLISSETEMQR----RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS--EEED 183
           +L   I ++    R    ++++  M   +      W   L+            +    E 
Sbjct: 164 ALILDIFAQHAQSREGKAQVALAQMQ-YMLPRLRGWGQSLSRQMGGGGGGGMATRGPGET 222

Query: 184 VQNFSSKEVLNDILFLKNDISSHI--SQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALA 240
                 + + + +  L+ ++            E  RN    + + G++NAGKSSL N L 
Sbjct: 223 KIETDRRRINDKMARLRRELEQLKTGRDVNREERRRNKVLSVALAGYTNAGKSSLLNRLT 282

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
              V +   +  T    +       G    I+DT G          E  + T  EV +A 
Sbjct: 283 GAGVLVENALFATLDTTVRRATTPSGRPYTIADTVGFVRHLPHHLVEAFRSTIEEVADAH 342

Query: 301 LILLLKEINSKKEISFPKNIDFIF------------IGTKSD------LYSTYTEEYD-H 341
           L+L + + +     +   ++  +             +  K+D      L     +E D  
Sbjct: 343 LVLHVVDGSHPDPGAQLASVREVLRDVGAGESTEVVVVNKADVADPDVLARLLEQEPDAI 402

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           ++S+ +G G++EL   I  +L +   ++   IP  +  L  
Sbjct: 403 VVSARSGRGIDELRELIDRLLPHPEVEVEVVIPYDEGSLVA 443


>gi|313905112|ref|ZP_07838481.1| small GTP-binding protein [Eubacterium cellulosolvens 6]
 gi|313470015|gb|EFR65348.1| small GTP-binding protein [Eubacterium cellulosolvens 6]
          Length = 401

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 3/110 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAG 276
           N   I + G  NAGKS+L NAL  ++V+IV+D  GTT DV+   +++ G       DTAG
Sbjct: 12  NRTHIGLFGRMNAGKSTLLNALTSQEVSIVSDRAGTTTDVVKKPMEIHGIGACTFLDTAG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK-EINSKKEISFPKNIDFIFI 325
           I ++ ++     +K         DL +++   ++   E  + ++     +
Sbjct: 72  IDDSGELGALR-VKAAEKAAAQVDLAVMVFGSVDDSLEKRWVEDFRSRKV 120


>gi|152995276|ref|YP_001340111.1| GTP-binding protein Era [Marinomonas sp. MWYL1]
 gi|150836200|gb|ABR70176.1| GTP-binding protein Era [Marinomonas sp. MWYL1]
          Length = 300

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 78/206 (37%), Gaps = 23/206 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +  + ++I +  P TTRD +      E       DT G+   +
Sbjct: 12  IAIVGRPNVGKSTLLNHILGQKLSITSRKPQTTRDQILGVKTEEHVQAIYVDTPGLHLGE 71

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFPKN-----IDFIFIGTKSD--- 330
              + +   K     +++ D++L + + +  ++++ S  +         I +  K D   
Sbjct: 72  TKAINRIMNKTAAAALKDVDVVLFVIDADRWTEEDESVLQKVKHARCPVILVVNKVDQLD 131

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L           IS+     L+ L   ++S +    +  P    +++  
Sbjct: 132 QKEDLLPRLANLSDRMNFAQIVPISALRNNNLDRLERLVESYIPEGTQFYPEDQITNRSS 191

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDII 405
            +  ++ VR      L  ++   ++ 
Sbjct: 192 RFLAAEIVREKITRQLG-QEVPYEVA 216


>gi|147919506|ref|YP_686754.1| GTP-binding protein [uncultured methanogenic archaeon RC-I]
 gi|110622150|emb|CAJ37428.1| conserved GTP-binding protein [uncultured methanogenic archaeon
           RC-I]
          Length = 425

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 86/227 (37%), Gaps = 26/227 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D+        +  I      I     Q +L    R    + + G++NAGKS+L NAL  +
Sbjct: 152 DIYESEITGRIAKIKEELAVIRKRQDQTRLRRKERGFDMVALAGYTNAGKSTLMNALVGE 211

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +  D   TT    T  ++     V ++DT G  +       E  + T  E+  ADLI
Sbjct: 212 TV-VAKDQLFTTLVPTTRMMEAGRRRVLLTDTVGFIKDLPHFMVEAFRSTLEEIYLADLI 270

Query: 303 LLLKEINSKKEISFPK-------------NIDFIFIGTKSDLYSTYTEE----------- 338
           +L+ + +   E+   K              I  I    K D     T E           
Sbjct: 271 ILVVDASEPPEVVLEKLATCHDTLWGKIGPIPVITALNKIDKIDLPTLERTEAAIKNLAP 330

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           +   +S+ TG+GLEEL   +      K+     ++P  +  L  LSQ
Sbjct: 331 HPVAVSARTGDGLEELRATV-EFFLPKWVSAELTLPHTEEGLSTLSQ 376


>gi|148653665|ref|YP_001280758.1| HSR1-like GTP-binding protein [Psychrobacter sp. PRwf-1]
 gi|148572749|gb|ABQ94808.1| GTP-binding protein, HSR1-related [Psychrobacter sp. PRwf-1]
          Length = 481

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 124/314 (39%), Gaps = 27/314 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  ++   + L   W   L   +  I        + +      +  ++
Sbjct: 116 RARTYEGKLQVELAQLNHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLQIRVS 174

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +    + +    +QG+      +   I ++G++NAGKSSLFN L  +D+    D    T
Sbjct: 175 QLKARLDKVKQTRAQGRAKRQKSDVLTISLVGYTNAGKSSLFNRLVDEDI-YAADQLFAT 233

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            D     +D +G   V + DT G          E    T  E   ADL+L + + +S   
Sbjct: 234 LDPTLRRMDWQGVGRVVLVDTVGFVRHLPHELVESFHATLEETLEADLLLHVIDSSSPDM 293

Query: 312 -KEI--------SFPKNIDFIFIGTKSDLYSTYTE--------EYDHLISSFTGEGLEEL 354
            ++I            ++  + +  K D+     +             +S+    G+  L
Sbjct: 294 HEQIKAVKEVLSEIDNHVPVLNVYNKIDITGEPAQINYSGPGVPSRVYVSAKADLGMSML 353

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414
              ++ +L+ K      ++P +  +L +    +  +E  S +E+  G +++   LRL S 
Sbjct: 354 HTAVQQLLTGKLNTFEITLPFNAGNLKNELYRLDVVEQESYDEQ--GHEVLT--LRLPSD 409

Query: 415 SLGKITGCVDVEQL 428
            L ++ G  +++ L
Sbjct: 410 KLQQLLGQANIDPL 423


>gi|85373794|ref|YP_457856.1| GTP-binding protein Era [Erythrobacter litoralis HTCC2594]
 gi|122544698|sp|Q2NB82|ERA_ERYLH RecName: Full=GTPase Era
 gi|84786877|gb|ABC63059.1| GTPase [Erythrobacter litoralis HTCC2594]
          Length = 304

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 77/207 (37%), Gaps = 26/207 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL----DLEGYLVKISDTAGI 277
           + +LG  NAGKS+L N L  + VAI +    TTR  +        D     + + DT GI
Sbjct: 11  VAVLGAPNAGKSTLVNQLVGQKVAITSAKAQTTRARMLGIALHESDDAKTQMILVDTPGI 70

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTK- 328
                 +++  +   +   E+AD +LLL +   ++             +    I +  K 
Sbjct: 71  FAPRRRLDRAMVSAAWEGAESADAVLLLVDPVKQRRHELEPLLESLKDRPERKILVLNKV 130

Query: 329 ------------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                        DL         + +S+ TG+G+ E+ N + +++       P    S 
Sbjct: 131 DVAKKEPLLALAQDLSQKVDFAEIYFVSALTGDGVPEMKNALAALMPEGVWHYPEDQVSD 190

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLD 403
                  ++  R      L+E +   D
Sbjct: 191 ASERLLATEITREQLYQQLHE-ELPYD 216


>gi|159903563|ref|YP_001550907.1| GTPase SAR1 and related small G protein [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888739|gb|ABX08953.1| GTPase SAR1 and related small G protein [Prochlorococcus marinus
           str. MIT 9211]
          Length = 516

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 99/244 (40%), Gaps = 18/244 (7%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
           E +     +   N          + + Q    E++R    +V+ G  ++GK++L  AL K
Sbjct: 89  ESIDRLIDRIHNNVSAEALKQRRASVEQ----ELVRGDITVVLFGTGSSGKTTLIRALLK 144

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           + V  V+   GTT+   T  L L+G    ++I DT GI ET +   K   + +FL+   A
Sbjct: 145 EIVGEVSATMGTTKTSHTYRLRLKGLERGIQIIDTPGILETGEEGNKREKE-SFLKASRA 203

Query: 300 DLILLLKEINSKK-EISFPK-----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           DLI+++ + + +  E+             + +  K DL          L      + L  
Sbjct: 204 DLIIVVVDTDLRSIEMKLIATLAKGGKRLLLVLNKCDLRGEEEIRRLLLTLRRHTKDLIN 263

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
             + I +  S +   +P   P     L  L +    +   +    + G ++IA N+ L  
Sbjct: 264 PEDVIATSASPQSIPVPGGYP-----LQPLPEIDGLIRQVARILHEEGEELIASNILLQC 318

Query: 414 VSLG 417
            +LG
Sbjct: 319 KNLG 322


>gi|304389603|ref|ZP_07371565.1| GTP-binding protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304327156|gb|EFL94392.1| GTP-binding protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 524

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 23/207 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + + + +  L+ ++ +     +     R       + I+G++NAGKSSL N LA  
Sbjct: 251 ELDRRRIRSRMARLRRNLKALAPTREAKRASRKAGGIPAVAIVGYTNAGKSSLLNRLAGA 310

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           ++ +   +  T    +      EG    ++DT G          E  + T  E   ADLI
Sbjct: 311 NLLVHDALFATLDPSVRRAHTPEGREYTLADTVGFVRRLPTELVEAFRSTLEETAMADLI 370

Query: 303 LLLKEINSKKEISFPKNID-------------FIFIGTKSDLYSTYTEEY-------DHL 342
           L + + ++   ++    +D              + +  K D  S              + 
Sbjct: 371 LHVVDGSNPDPMAQVAAVDATLELVEGIEEISVMMVVNKIDQASAPALALLRHSLPEAYY 430

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKL 369
           +S+ TGEG+E L   I   L    +++
Sbjct: 431 VSARTGEGIEALQQSIADRLPWPGQRV 457


>gi|254551780|ref|ZP_05142227.1| putative GTP-binding protein [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260187741|ref|ZP_05765215.1| putative GTP-binding protein [Mycobacterium tuberculosis CPHL_A]
 gi|260201849|ref|ZP_05769340.1| putative GTP-binding protein [Mycobacterium tuberculosis T46]
 gi|260206033|ref|ZP_05773524.1| putative GTP-binding protein [Mycobacterium tuberculosis K85]
 gi|294994185|ref|ZP_06799876.1| putative GTP-binding protein [Mycobacterium tuberculosis 210]
 gi|297635332|ref|ZP_06953112.1| putative GTP-binding protein [Mycobacterium tuberculosis KZN 4207]
 gi|297732328|ref|ZP_06961446.1| putative GTP-binding protein [Mycobacterium tuberculosis KZN R506]
 gi|306777003|ref|ZP_07415340.1| GTP-binding protein hflX [Mycobacterium tuberculosis SUMu001]
 gi|306973118|ref|ZP_07485779.1| GTP-binding protein hflX [Mycobacterium tuberculosis SUMu010]
 gi|307080827|ref|ZP_07489997.1| GTP-binding protein hflX [Mycobacterium tuberculosis SUMu011]
 gi|307085419|ref|ZP_07494532.1| GTP-binding protein hflX [Mycobacterium tuberculosis SUMu012]
 gi|313659661|ref|ZP_07816541.1| putative GTP-binding protein [Mycobacterium tuberculosis KZN V2475]
 gi|308214660|gb|EFO74059.1| GTP-binding protein hflX [Mycobacterium tuberculosis SUMu001]
 gi|308357517|gb|EFP46368.1| GTP-binding protein hflX [Mycobacterium tuberculosis SUMu010]
 gi|308361470|gb|EFP50321.1| GTP-binding protein hflX [Mycobacterium tuberculosis SUMu011]
 gi|308365065|gb|EFP53916.1| GTP-binding protein hflX [Mycobacterium tuberculosis SUMu012]
 gi|323718718|gb|EGB27880.1| GTP-binding protein hflX [Mycobacterium tuberculosis CDC1551A]
          Length = 476

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 96/280 (34%), Gaps = 25/280 (8%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q    +  + G   S+  Q   +       +        + +      +E +  +  
Sbjct: 171 SLAQMEYMLPRLRGWGESMSRQAGGRAGGSGGGVGLRGPGETKIETDRRRIRERMAKLRR 230

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
               +       +      +   I I+G++NAGKSSL NAL    V +V D    T +  
Sbjct: 231 DIRAMKQVRDTQRSRRRHSDVPSIAIVGYTNAGKSSLLNALTGAGV-LVQDALFATLEPT 289

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           T   +  +G  V ++DT G          E  + T  EV +ADL++ + + +    ++  
Sbjct: 290 TRRAEFGDGRPVVLTDTVGFVRHLPTQLVEAFRSTLEEVVHADLLVHVVDGSDGHPLAQI 349

Query: 318 KN----------------IDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGLEEL 354
                                + +  K D+ S        +       +S+ TG+G++ L
Sbjct: 350 DAVRQVISEVIADHDGDPPPELLVVNKVDVASDLMLAKLRHGLPGAVFVSARTGDGIDAL 409

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
             ++  ++      +   IP  +  L         ++ A 
Sbjct: 410 RRRMAELVVPADTAVDVVIPYDRGDLVARVHADGRIQQAE 449


>gi|220931435|ref|YP_002508343.1| Ferrous iron transport protein FeoB [Halothermothrix orenii H 168]
 gi|219992745|gb|ACL69348.1| Ferrous iron transport protein FeoB [Halothermothrix orenii H 168]
          Length = 173

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 20/167 (11%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I  N  K+ ++G  N GKS +FN L     A+V++ PGTT ++ T  + +EG +V++ DT
Sbjct: 7   ITTNDKKVYLVGSPNVGKSVIFNYLT-DSYALVSNYPGTTVELSTGKILIEGQVVRLIDT 65

Query: 275 AGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGT 327
            GI      I E+E + R  L   N DL++ + +  + +++            + I +  
Sbjct: 66  PGIYSLYFPISEEEKVTRKVLMTGNPDLVIHVIDAKNIEKMLVMTFELLELGYNLILVLN 125

Query: 328 KSD------------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
             D            L S           S TG+G+ EL   I  ++
Sbjct: 126 IIDEAKKLGISINTELLSNILGIPVVGTVSITGQGMRELFFLISKMV 172


>gi|329939974|ref|ZP_08289256.1| GTP-binding protein HflX [Streptomyces griseoaurantiacus M045]
 gi|329300800|gb|EGG44696.1| GTP-binding protein HflX [Streptomyces griseoaurantiacus M045]
          Length = 497

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 104/276 (37%), Gaps = 26/276 (9%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS--EEEDVQNFSSKEV 192
            +++     ++++  M   +      W   L+      +     +    E       + +
Sbjct: 186 HAKSREGKAQVALAQMQ-YMLPRLRGWGQSLSRQMGGGKGGGLATRGPGETKIETDRRRI 244

Query: 193 LNDILFLKNDISSHI--SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTD 249
              +  ++ +I+      + K  E  RN    + I G++NAGKSSL N L    V +   
Sbjct: 245 REKMAKMRREIAEMKTGREIKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENA 304

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  T    +       G L  ++DT G          E  + T  EV ++DLIL + + +
Sbjct: 305 LFATLDPTVRRAETPGGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGS 364

Query: 310 S---KKEISFPK---------NIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGEG 350
               +++++  +         ++  I +  K+D             E+    +S+ TG G
Sbjct: 365 HPVPEEQLAAVREVIRDVGATDVPEIVVVNKADAADPLVLQRLLRNEKRAIAVSARTGRG 424

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           ++EL+  I + L     ++   +P  +  L   +  
Sbjct: 425 IDELLAVIDAELPRPAIEVEALVPYTQGKLVARAHA 460


>gi|54025798|ref|YP_120040.1| putative GTP-binding protein [Nocardia farcinica IFM 10152]
 gi|54017306|dbj|BAD58676.1| putative GTP-binding protein [Nocardia farcinica IFM 10152]
          Length = 548

 Score = 79.5 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 86/234 (36%), Gaps = 29/234 (12%)

Query: 188 SSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV 244
             + +   +  L+ +I       + K      +G  ++ I+G++NAGKSSL NAL    V
Sbjct: 278 DRRRIRERMAKLRREIREMKTARETKRARRASSGIPQVAIVGYTNAGKSSLMNALTGSGV 337

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D  T   +L +G  V  +DT G          E  + T  EV  ADL+L
Sbjct: 338 -LVQDALFATLDPTTRRAELDDGREVVFTDTVGFVRHLPTQLVEAFRSTLEEVTGADLLL 396

Query: 304 LLKEINSKKEISFPK----------------NIDFIFIGTKSDLYSTYTE-------EYD 340
            + + +        K                    + +  K D  S              
Sbjct: 397 HVVDGSDPDPAGQIKAVREVIADVIKESGAAAPPELLVVNKIDAISPMRRTELRGLLPDA 456

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMA 393
             +S+ TG G++ L  ++  +L     ++   +P  +  L        R LE A
Sbjct: 457 EFVSAHTGAGVDGLRARLNEVLGGLDVEVGVLLPYTRGDLLARVHADGRILESA 510


>gi|121638600|ref|YP_978824.1| putative GTP-binding protein hflX [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224991092|ref|YP_002645781.1| putative GTP-binding protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|121494248|emb|CAL72726.1| probable GTP-binding protein hflX [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224774207|dbj|BAH27013.1| putative GTP-binding protein [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 495

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 96/280 (34%), Gaps = 25/280 (8%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q    +  + G   S+  Q   +       +        + +      +E +  +  
Sbjct: 190 SLAQMEYMLPRLRGWGESMSRQAGGRAGDSGGGVGLRGPGETKIETDRRRIRERMAKLRR 249

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
               +       +      +   I I+G++NAGKSSL NAL    V +V D    T +  
Sbjct: 250 DIRAMKQVRDTQRSRRRHSDVPSIAIVGYTNAGKSSLLNALTGAGV-LVQDALFATLEPT 308

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           T   +  +G  V ++DT G          E  + T  EV +ADL++ + + +    ++  
Sbjct: 309 TRRAEFGDGRPVVLTDTVGFVRHLPTQLVEAFRSTLEEVVHADLLVHVVDGSDGHPLAQI 368

Query: 318 KN----------------IDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGLEEL 354
                                + +  K D+ S        +       +S+ TG+G++ L
Sbjct: 369 DAVRQVISEVIADHDGDPPPELLVVNKVDVASDLMLAKLRHGLPGAVFVSARTGDGIDAL 428

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
             ++  ++      +   IP  +  L         ++ A 
Sbjct: 429 RRRMAELVVPADTAVDVVIPYDRGDLVARVHADGRIQQAE 468


>gi|295399932|ref|ZP_06809913.1| GTP-binding proten HflX [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978335|gb|EFG53932.1| GTP-binding proten HflX [Geobacillus thermoglucosidasius C56-YS93]
          Length = 413

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 18/201 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
           ++I ++G++NAGKS+LFN L   D +   ++   T D LT  + L  GY V ++DT G  
Sbjct: 197 FQISLVGYTNAGKSTLFNRLTDAD-SFEENLLFATLDPLTRKMTLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIG 326
           +          + T  EV+ ADLIL + + ++              +     +I  + I 
Sbjct: 256 QDLPTTLVAAFRSTLEEVKEADLILHVVDSSNPDYYHHEQTVYELLDELGVSSIPIVTIY 315

Query: 327 TKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
            K D+    +   T+    +IS+F    L  L   I+  +  +      SIPS++  L  
Sbjct: 316 NKRDIAHRNFVPSTKTDAIIISAFDAHDLRRLRQFIEETMMKQMVHYHASIPSNEGRLLA 375

Query: 383 LSQTVRYLEMASLNEKDCGLD 403
             +    L     NE+    +
Sbjct: 376 QLKAETILRELHYNEESGMYE 396


>gi|284044712|ref|YP_003395052.1| GTP-binding proten HflX [Conexibacter woesei DSM 14684]
 gi|283948933|gb|ADB51677.1| GTP-binding proten HflX [Conexibacter woesei DSM 14684]
          Length = 450

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/342 (17%), Positives = 111/342 (32%), Gaps = 43/342 (12%)

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN-------GK 122
           P P ++ GE   E         +  +L+E                 R  E         +
Sbjct: 66  PHPNTYLGEGKLEE--------LRALLKEADANVVAVDDELSPRQERNLERALDTPVIDR 117

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
             ++         S+E ++Q  L+    +          +++L                 
Sbjct: 118 TSIILDIFAGHAHSAEGKLQVELAQLQYNLARMRGLWTHLERLGAGAGGPGGGPGIGTRG 177

Query: 183 DVQ---NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLF 236
             +       +   + I  L+  +       +     R+  +   + ++G++NAGKS+L 
Sbjct: 178 PGESQIETDRRLARDRITALRRRLERVKGSRETMRAERDRARLPTVALVGYTNAGKSTLL 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L   +V  V D    T D  T    L G    ++DT G          E    T  E 
Sbjct: 238 NRLTGAEVG-VRDRLFHTLDPTTRSYKLGGRDYLLTDTVGFIRKLPHQLVEAFGATLEET 296

Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSD-LYSTYTEEYDH 341
             ADL+L + + ++ +E                   +   + I  K+D L      E   
Sbjct: 297 RLADLLLHVVDASAPEEELDEMMRAVDSVLGDIGAGDQPRLLILNKADALDDDQRHEVQL 356

Query: 342 LI------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                   S+ TGEGL+ L  +I+   + + + +   +P  +
Sbjct: 357 RHPDGMLISAATGEGLDALGERIEEEFARRLRDVELLLPYSE 398


>gi|302385226|ref|YP_003821048.1| ferrous iron transport protein B [Clostridium saccharolyticum WM1]
 gi|302195854|gb|ADL03425.1| ferrous iron transport protein B [Clostridium saccharolyticum WM1]
          Length = 665

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 81/220 (36%), Gaps = 36/220 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             +  +G+ N GK++LFNA     +  V + PG T + +  +   +G  +++ DT GI  
Sbjct: 8   IHVGFVGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERVEGETSYKGRPIRVVDTPGIYS 66

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                 +E + R  LE +  D+I+ + + +S +                I      D+  
Sbjct: 67  LTCYTLEEIVTRKCLENDEVDVIINVVDASSLERNLYLTLQLLELKKPVILALNMMDIVE 126

Query: 334 TYTEEYDHLI-------------SSFTGEGLEELINKIKSI---------------LSNK 365
               E D                S+    GL+ L++ +                  + NK
Sbjct: 127 DRGMEIDLHRLPEMLGSIPVVPVSARKRTGLDVLLHAVVHHYEEGPQGVVVTYTPKIENK 186

Query: 366 FKKLPFSIPSHKRHLYHLS-QTVRYLEMASLNEKDCGLDI 404
             K+   + +H   L +L    +++LE       D  LD+
Sbjct: 187 ISKIETILKAHYGDLDNLRWHAIKFLEYDEEVWNDHPLDL 226


>gi|323692185|ref|ZP_08106428.1| GTP-binding protein HflX [Clostridium symbiosum WAL-14673]
 gi|323503759|gb|EGB19578.1| GTP-binding protein HflX [Clostridium symbiosum WAL-14673]
          Length = 418

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 98/253 (38%), Gaps = 23/253 (9%)

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           +  ++SE ++Q  L+        ++      + L+ +   I       ++ +V      +
Sbjct: 117 SHAVTSEGKIQVELAQLKYR---AARLVGLRNSLSRLGGGIGTRGPGEKKLEVDRRLIHD 173

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            +  +     ++  H    +            I+G++NAGKS+L N L    + +  D  
Sbjct: 174 RIGQLKAELLEVKRHREVARKQRDRNYTLSAAIVGYTNAGKSTLLNKLTGAGI-LAEDKL 232

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D  T  ++L  G  + ++DT G          E  + T  E   +D+IL + +  S
Sbjct: 233 FATLDPTTRGMELPSGQKILLTDTVGFIRKLPHHLIEAFRSTLEEARYSDIILHVVDCVS 292

Query: 311 KKEISF------------PKNIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEGLE 352
            +  S              K+   + +  K D      +      +Y   IS+ TGEGLE
Sbjct: 293 PQMDSQIHIVYETLRKLEIKDKTIVTVFNKIDCLEQEVILKDLQSDYQVKISARTGEGLE 352

Query: 353 ELINKIKSILSNK 365
           EL   +++IL  +
Sbjct: 353 ELTEILETILRGR 365


>gi|284048360|ref|YP_003398699.1| GTP-binding proten HflX [Acidaminococcus fermentans DSM 20731]
 gi|283952581|gb|ADB47384.1| GTP-binding proten HflX [Acidaminococcus fermentans DSM 20731]
          Length = 604

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 106/286 (37%), Gaps = 30/286 (10%)

Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI 196
           SE ++Q  L+       +          L+ +   I        + +V     ++ +  +
Sbjct: 304 SEGKLQVELAQLQY---MLPRIMGQGTSLSRLGGGIGTRGPGETKLEVDRRRIRDRIAFL 360

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
                 +  +  Q +         ++ ++G++NAGKS+L N L   D+    D    T D
Sbjct: 361 EDQIRRMKGNRKQQQRARNKNEVKQVCLVGYTNAGKSTLLNTLTHSDI-YAQDQLFATLD 419

Query: 257 VLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             T  LDL +G    ++DT G  +          K T   V++ADL+L + + + +    
Sbjct: 420 PTTRQLDLPDGSSCTLTDTVGFIQRLPHQLVAAFKSTLEVVKDADLLLHVVDSSHELARE 479

Query: 316 FPK------------NIDFIFIGTKSDLYSTYT--------EEYDHLISSFTGEGLEELI 355
             +            +   + +  K D  S +         E+    IS+ TGEG+ EL+
Sbjct: 480 QTEAVYQVLQELGVTDKPILTVYNKVDRLSQHEGLRRRLEQEDNALCISARTGEGVPELL 539

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
             +  +L     +    IP  +  L       R  E A +  ++ G
Sbjct: 540 ETLARLLGQDRVEADLCIPYGESRL-----AARLHEEAQVLSEEYG 580


>gi|260554075|ref|ZP_05826338.1| GTPase [Acinetobacter sp. RUH2624]
 gi|260404814|gb|EEW98321.1| GTPase [Acinetobacter sp. RUH2624]
          Length = 444

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 120/325 (36%), Gaps = 28/325 (8%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + T E + ++ +  +    + L   W       +  I        + +      +  +
Sbjct: 114 LRARTHEGKLQVELAQLKHLSTRLIRGWSADFEQQKGGIGLRGPGETQLETDRRLIRVRI 173

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             +    + +     QG+      +   + ++G++NAGKS+LFN LAK DV    D    
Sbjct: 174 TQLKDKLDKVHQTRIQGRAARQKASIPTVSLVGYTNAGKSTLFNILAKSDV-YAADQLFA 232

Query: 254 TRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D     L+ +G   V ++DT G          E  K T  E   A L+L + + +S  
Sbjct: 233 TLDPTLRRLEWDGIGTVVLADTVGFVRNLQHDLVESFKATLEETLEATLLLHVIDSSSHD 292

Query: 313 EISFPK-----------NIDFIFIGTKSDLYSTYTEEY--------DHLISSFTGEGLEE 353
            +   +           +   + +  K DL     +             +S+ +G GL+ 
Sbjct: 293 MLDQIEAVEGVLKEIGADSPVLRVYNKIDLSGEEAKIIYSQPHVPDRVYVSAHSGLGLDL 352

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L   ++  L  + ++    +      L      +  +E    +++     I+  ++R+A 
Sbjct: 353 LRQAVQECLMGQLQQFSLKLKPAYGKLRTQLYALNVIESEHYDDEG----ILHIDIRIAP 408

Query: 414 VSLGKITGCVD--VEQLLDIIFSKF 436
             L ++       ++++L    S+F
Sbjct: 409 HKLEQLIRQAKLPIDEILGERASQF 433


>gi|313801893|gb|EFS43127.1| GTP-binding protein HflX [Propionibacterium acnes HL110PA2]
 gi|314962812|gb|EFT06912.1| GTP-binding protein HflX [Propionibacterium acnes HL082PA1]
          Length = 493

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 31/220 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQ---GKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK- 242
           + +  ++  + +     +HI      K  + IRN    + I+G++NAGKSSL N L +  
Sbjct: 237 TDRRRISHRIAVLRRRLTHIESTRASKRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAG 296

Query: 243 ---DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + A+   +  TTR   T     +G +  ++DT G          E    T  E   A
Sbjct: 297 VLVENALFATLDPTTRRATT----SDGRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMA 352

Query: 300 DLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE-------EYD 340
           +++L + + +    +                NI  I +  K D  S  T           
Sbjct: 353 EVLLHVVDADDPDPLGQVDAVRGVLSGIGASNIPEILVLNKIDRLSDETILTLRSTFPGA 412

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +L+S+ TGEG+++L+  I++ L    +++   IP  +  L
Sbjct: 413 YLVSAHTGEGIDKLVEAIEAGLPIPSQRVDVVIPYARGDL 452


>gi|90420863|ref|ZP_01228768.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90334838|gb|EAS48610.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 320

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 81/204 (39%), Gaps = 23/204 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + +LG  NAGKS+L N L    V+IVT    TTR ++      +   +   DT G
Sbjct: 26  RSGF-VALLGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIAMRDRTQIVFVDTPG 84

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTK 328
           +      +++  ++  +    +AD++L + +    IN + E    +        + +  K
Sbjct: 85  VFAPKRRLDRAMVRTAWSGARDADIVLAIIDADRGINEEVETILERLKDVKQPKVLLLNK 144

Query: 329 SD---------LYSTYTE-----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            D         L    TE     +   +IS+  G G  +L++ +   L       P    
Sbjct: 145 VDQMRRDRLLGLTQQITERGVAFDEIFMISALNGSGCGDLMDYLAKALPEGPWYYPEDQI 204

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           +        ++  R      L+++
Sbjct: 205 TDLPLRQLAAEITREKLYLRLHQE 228


>gi|15643211|ref|NP_228255.1| hypothetical protein TM0445 [Thermotoga maritima MSB8]
 gi|4980952|gb|AAD35530.1|AE001722_14 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 404

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query: 219 GYKIVIL--GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTA 275
           G++  I+  G  N GKSS  NAL  ++V+IV++  GTT D +   ++L     V + DT 
Sbjct: 7   GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSEYAGTTTDPVYKSMELYPVGPVTLVDTP 66

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKS 329
           G+ +  ++     +++       AD  +L+ +       +    +     I F+ +  K 
Sbjct: 67  GLDDVGELGRLR-VEKARRVFYRADCGILVTDSEPTPYEDDVVNLFKEMEIPFVVVVNKI 125

Query: 330 DLYSTYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFK 367
           D+     EE   L            S+   +G +++   I  IL    +
Sbjct: 126 DVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGDEE 174


>gi|212636522|ref|YP_002313047.1| GTP-binding protein Era [Shewanella piezotolerans WP3]
 gi|212558006|gb|ACJ30460.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein
           Era [Shewanella piezotolerans WP3]
          Length = 330

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 70/206 (33%), Gaps = 25/206 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +          V   DT G+  E 
Sbjct: 39  VAIVGRPNVGKSTLLNKLLGQKISITSKKPQTTRHRIMGIHTDGPRQVVFIDTPGLHMEE 98

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK------NIDFIFIGTKSD- 330
              + +   +     +    L++ + +     +  E+   K          +    K D 
Sbjct: 99  KRAINRLMNRAAASSLAEVSLVVFVVDGMNWTADDEMVLRKLQSRNDGRKTVLAINKVDN 158

Query: 331 -------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                        L   +  +    IS+  G  ++ +++     +       P    + +
Sbjct: 159 IKDKEALFPHLEELSKKFEFDEILPISATQGTNVQRILDMSVESVPESPHFFPEDYVTDR 218

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLD 403
              +  S+ VR   M  L + +   D
Sbjct: 219 SQKFMASEIVREKLMRFLGD-ELPYD 243


>gi|15600136|ref|NP_253630.1| GTP-binding protein [Pseudomonas aeruginosa PAO1]
 gi|9951223|gb|AAG08328.1|AE004907_6 probable GTP-binding protein [Pseudomonas aeruginosa PAO1]
          Length = 433

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 108/311 (34%), Gaps = 25/311 (8%)

Query: 115 RRAFENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
            RAFE   +D            + T E + ++ +  +    + L   W   L   +  I 
Sbjct: 94  ERAFECRVLDRTGLILDIFAQRARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIG 152

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
                  + +      +  +  I      + S   Q + G    +   + ++G++NAGKS
Sbjct: 153 LRGPGETQLETDRRLLRVRIRQIKQRLEKVRSQREQARRGRKRADIPAVSLVGYTNAGKS 212

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRT 292
           +LFN+L   +V    +    T D     L L+    V ++DT G          E  + T
Sbjct: 213 TLFNSLTASEV-YAANQLFATLDPTLRRLQLDDLGPVVLADTVGFIRHLPHKLVEAFRAT 271

Query: 293 FLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEEYD 340
             E  NADL+L + +    +  +                +  + +  K DL  +      
Sbjct: 272 LEESSNADLLLHVIDAYEPERDAQVEQVLAVLGEIGANELPMLEVYNKVDLLPSVEPHIQ 331

Query: 341 ---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                      +S+ TGEGL+ L   I  +L          +P     L      +  ++
Sbjct: 332 RDDSGKPVRVWLSAQTGEGLDLLRQAIAELLGEDLFVGTLRLPQRLGRLRAQLFELGAVQ 391

Query: 392 MASLNEKDCGL 402
             + +E+ C L
Sbjct: 392 SEAHDEEGCTL 402


>gi|39996482|ref|NP_952433.1| ferrous iron transport protein B [Geobacter sulfurreducens PCA]
 gi|39983362|gb|AAR34756.1| ferrous iron transport protein B [Geobacter sulfurreducens PCA]
          Length = 663

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 19/159 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GKS LFNAL    VA V++ PGT+ +V       EG   +I DT G+   
Sbjct: 23  KVALVGNPNVGKSVLFNALTGAYVA-VSNYPGTSVEVSRGSASFEGGSWEIIDTPGMYSI 81

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYST 334
             I E+E + R  L  E  D++L + +  + + +           +  I +    D    
Sbjct: 82  LPITEEERVAREILLTERPDVVLHVLDARNLERMLVMTLQLVEAGLPVILVVNIMDEAER 141

Query: 335 YTEEYDHL------------ISSFTGEGLEELINKIKSI 361
              E D               ++    GL E+   I S 
Sbjct: 142 MGLEIDIPLLQEKLGIPVIGAATAKKRGLPEIRKAIASC 180


>gi|22298365|ref|NP_681612.1| hypothetical protein tlr0823 [Thermosynechococcus elongatus BP-1]
 gi|22294544|dbj|BAC08374.1| tlr0823 [Thermosynechococcus elongatus BP-1]
          Length = 358

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 26/199 (13%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
              + ++ + IV+LG    GKS+L NAL  + +  V  I GTT+   T+    +  +V +
Sbjct: 39  RDRLHQSAWHIVVLGQVGRGKSALLNALYGEAIFPVGAIHGTTQWPRTVRWHCQDQIVDL 98

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFI 325
           +DT G+ E      +     T+  +E ADL+L + + +        ++      I    I
Sbjct: 99  TDTPGLDEVAGSDRETM---TWSVLETADLVLFVTQDSLTPVECQARDRLHTLRIPHKLI 155

Query: 326 GTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
            TK+DLY    E      SS TG+G+ EL   ++  L  +  +               ++
Sbjct: 156 LTKADLYPPMAEGIAV--SSTTGQGIPELRQLLQQWLQQEAPQ---------------AR 198

Query: 386 TVRYLEMASLNEKDCGLDI 404
            +R L  AS  E+  G  +
Sbjct: 199 ALRILHQASQVEQSLGAAL 217


>gi|323486669|ref|ZP_08091990.1| hypothetical protein HMPREF9474_03741 [Clostridium symbiosum
           WAL-14163]
 gi|323400050|gb|EGA92427.1| hypothetical protein HMPREF9474_03741 [Clostridium symbiosum
           WAL-14163]
          Length = 418

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 98/253 (38%), Gaps = 23/253 (9%)

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           +  ++SE ++Q  L+        ++      + L+ +   I       ++ +V      +
Sbjct: 117 SHAVTSEGKIQVELAQLKYR---AARLVGLRNSLSRLGGGIGTRGPGEKKLEVDRRLIHD 173

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            +  +     ++  H    +            I+G++NAGKS+L N L    + +  D  
Sbjct: 174 RIGQLKAELLEVKRHREVARKQRDRNYTLSAAIVGYTNAGKSTLLNKLTGAGI-LAEDKL 232

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D  T  ++L  G  + ++DT G          E  + T  E   +D+IL + +  S
Sbjct: 233 FATLDPTTRGMELPSGQKILLTDTVGFIRKLPHHLIEAFRSTLEEARYSDIILHVVDCVS 292

Query: 311 KKEISF------------PKNIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEGLE 352
            +  S              K+   + +  K D      +      +Y   IS+ TGEGLE
Sbjct: 293 PQMDSQIHIVYETLRKLEIKDKTIVTVFNKIDCLEQEVILKDLQSDYQVKISARTGEGLE 352

Query: 353 ELINKIKSILSNK 365
           EL   +++IL  +
Sbjct: 353 ELTEILETILRGR 365


>gi|312111545|ref|YP_003989861.1| GTP-binding proten HflX [Geobacillus sp. Y4.1MC1]
 gi|311216646|gb|ADP75250.1| GTP-binding proten HflX [Geobacillus sp. Y4.1MC1]
          Length = 413

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 18/201 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
           ++I ++G++NAGKS+LFN L   D +   ++   T D LT  + L  GY V ++DT G  
Sbjct: 197 FQISLVGYTNAGKSTLFNRLTDAD-SFEENLLFATLDPLTRKMTLPSGYTVLLTDTVGFI 255

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIG 326
           +          + T  EV+ ADLIL + + ++              +     +I  + I 
Sbjct: 256 QDLPTTLVAAFRSTLEEVKEADLILHVVDSSNPDYYHHEQTVYELLDELGVSSIPIVTIY 315

Query: 327 TKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
            K D+    +   T+    +IS+F    L  L   I+  +  +      SIPS++  L  
Sbjct: 316 NKRDIAHRNFVPSTKTDAIIISAFDAHDLRRLRQFIEETMMKQMVHYHASIPSNEGRLLA 375

Query: 383 LSQTVRYLEMASLNEKDCGLD 403
             +    L     NE+    +
Sbjct: 376 QLKAETILRELHYNEESGMYE 396


>gi|302537342|ref|ZP_07289684.1| GTP-binding protein HflX [Streptomyces sp. C]
 gi|302446237|gb|EFL18053.1| GTP-binding protein HflX [Streptomyces sp. C]
          Length = 501

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 98/276 (35%), Gaps = 26/276 (9%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS--EEEDVQNFSSKEV 192
            +++     ++++  M   +      W   L+            +    E       + +
Sbjct: 191 HAKSREGKAQVALAQMQ-YMLPRLRGWGQSLSRQMGGGGGGGMATRGPGETKIETDRRRI 249

Query: 193 LNDILFLKNDISSHI--SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTD 249
              +  ++ +I+        K  E  RN    + I G++NAGKSSL N L    V +   
Sbjct: 250 REKMAKMRREIAEMKTGRDIKRQERRRNKIPSVAIAGYTNAGKSSLLNRLTGAGVLVENA 309

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  T    +       G +  ++DT G          E  + T  EV ++DLIL + + +
Sbjct: 310 LFATLDPTVRRAETPSGRVYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHIVDGS 369

Query: 310 SKKEISFPK------------NIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGEG 350
                                N+  I +  K+D             E++   +S+ TG+G
Sbjct: 370 HPAPEEQLAAVREVIREVGAVNVPEIVVINKADAADPLVLQRLLRIEKHSIAVSARTGQG 429

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           +EEL+  I + L     ++   +P  +  L   +  
Sbjct: 430 IEELLALIDTELPRPAVEVEALVPYTRGSLVARAHA 465


>gi|254839187|pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
           Methanococcus Jannaschii
 gi|254839188|pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
           Methanococcus Jannaschii
          Length = 188

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 19/157 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS++FNAL  ++V I  + PG T +    + +  G   K+ D  G+  
Sbjct: 8   YEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 66

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                  E I R ++  E  DL++ + +  + +              + +    K DL  
Sbjct: 67  LTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAK 126

Query: 334 TYTEEYDHLI------------SSFTGEGLEELINKI 358
           +   E D               S+    G+EEL   I
Sbjct: 127 SLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAI 163


>gi|254281726|ref|ZP_04956694.1| GTP-binding protein Era [gamma proteobacterium NOR51-B]
 gi|219677929|gb|EED34278.1| GTP-binding protein Era [gamma proteobacterium NOR51-B]
          Length = 300

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR+ +          +   DT GI  ++
Sbjct: 12  VAIVGRPNVGKSTLLNYLLGQKISITSRKPQTTRNQVLGIKTDGNTQIIFVDTPGIHSSE 71

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLYS 333
              + +   +     V + DL+L + + N   E        +         +  K DL  
Sbjct: 72  PRAINRFMNRTAAAAVNDVDLVLQVCDRNRWTEEDDLVLSAASKSAAPVALVINKVDLLD 131

Query: 334 TYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +  +                IS+   + L+ L + I   +       P    + +  
Sbjct: 132 HPDQLLNFAETMTQKHNFTGVFPISALRNKQLDTLDDFIADKMPEGPHFFPDDQVTDRSE 191

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 192 RFLAAELIR 200


>gi|254238342|ref|ZP_04931665.1| hypothetical protein PACG_04477 [Pseudomonas aeruginosa C3719]
 gi|126170273|gb|EAZ55784.1| hypothetical protein PACG_04477 [Pseudomonas aeruginosa C3719]
          Length = 433

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 108/311 (34%), Gaps = 25/311 (8%)

Query: 115 RRAFENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
            RAFE   +D            + T E + ++ +  +    + L   W   L   +  I 
Sbjct: 94  ERAFECRVLDRTGLILDIFAQRARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIG 152

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
                  + +      +  +  I      + S   Q + G    +   + ++G++NAGKS
Sbjct: 153 LRGPGETQLETDRRLLRVRIRQIKQRLEKVRSQREQARRGRKRADIPAVSLVGYTNAGKS 212

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRT 292
           +LFN+L   +V    +    T D     L L+    V ++DT G          E  + T
Sbjct: 213 TLFNSLTASEV-YAANQLFATLDPTLRRLQLDDLGPVVLADTVGFIRHLPHKLVEAFRAT 271

Query: 293 FLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEEYD 340
             E  NADL+L + +    +  +                +  + +  K DL  +      
Sbjct: 272 LEESSNADLLLHVIDAYEPERDAQVEQVLAVLGEIGANELPMLEVYNKVDLLPSVEPHIQ 331

Query: 341 ---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                      +S+ TGEGL+ L   I  +L          +P     L      +  ++
Sbjct: 332 RDDSGKPVRVWLSAQTGEGLDLLRQAIAELLGEDLFVGTLRLPQRLGRLRAQLFELGAVQ 391

Query: 392 MASLNEKDCGL 402
             + +E+ C L
Sbjct: 392 SEAHDEEGCTL 402


>gi|145224541|ref|YP_001135219.1| GTP-binding protein, HSR1-related [Mycobacterium gilvum PYR-GCK]
 gi|145217027|gb|ABP46431.1| GTP-binding protein, HSR1-related protein [Mycobacterium gilvum
           PYR-GCK]
          Length = 482

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 94/247 (38%), Gaps = 31/247 (12%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +E ++ +     D+       +   +  +   + I+G++NAGKSSL NAL    V +V +
Sbjct: 229 RERMSKLRREIRDMKQVRDTQRSRRLANDVPSVTIVGYTNAGKSSLLNALTGAGV-LVEN 287

Query: 250 IPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T +  T   +L +G    ++DT G          E  + T  EV +A+L+L + + 
Sbjct: 288 ALFATLEPTTRRGELSDGREFVLTDTVGFVRHLPTQLVEAFRSTLEEVVDAELLLHVVDG 347

Query: 309 NSKKEISFPKNIDFI----------------FIGTKSDLYSTY-------TEEYDHLISS 345
           +    ++    +  +                 +  K D                   +S+
Sbjct: 348 SDANPLAQINAVRTVVNEVVAETDATAPPELLVVNKIDAADGLVLAQLRQALPGAVFVSA 407

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS------HKRHLYHLSQTVRYLEMASLNEKD 399
            TGE L+ L  ++  +++ +   +  +IP       ++ H       V ++E  +  +  
Sbjct: 408 RTGESLDRLQARLAEMIAPRDTVVDVTIPYSRGDLVNRVHAEGRVDAVEHIEAGTRLKAR 467

Query: 400 CGLDIIA 406
             + + A
Sbjct: 468 VPIALAA 474


>gi|148269615|ref|YP_001244075.1| small GTP-binding protein [Thermotoga petrophila RKU-1]
 gi|170288291|ref|YP_001738529.1| small GTP-binding protein [Thermotoga sp. RQ2]
 gi|147735159|gb|ABQ46499.1| small GTP-binding protein [Thermotoga petrophila RKU-1]
 gi|170175794|gb|ACB08846.1| small GTP-binding protein [Thermotoga sp. RQ2]
          Length = 404

 Score = 79.5 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query: 219 GYKIVIL--GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTA 275
           G++  I+  G  N GKSS  NAL  ++V+IV++  GTT D +   ++L     V + DT 
Sbjct: 7   GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSEYAGTTTDPVYKSMELYPVGPVTLVDTP 66

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKS 329
           G+ +  ++     +++       AD  +L+ +       +    +     I F+ +  K 
Sbjct: 67  GLDDVGELGRLR-VEKARRVFYRADCGILVTDSEPTPYEDDVVNLFKEMEIPFVVVVNKI 125

Query: 330 DLYSTYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFK 367
           D+     EE   L            S+   +G +++   I  IL    +
Sbjct: 126 DVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGDEE 174


>gi|294892517|ref|XP_002774103.1| gtp-binding protein enga, putative [Perkinsus marinus ATCC 50983]
 gi|239879307|gb|EER05919.1| gtp-binding protein enga, putative [Perkinsus marinus ATCC 50983]
          Length = 727

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 86/252 (34%), Gaps = 61/252 (24%)

Query: 220 YKIVILGHSNAGKSSLFNALA--------KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             + ++G  N GKSSLFN L          +  AIV    GTTRD  +    L    + +
Sbjct: 50  VTVCMVGRPNVGKSSLFNRLQSNNRNTENNRQKAIVYTAAGTTRDGKSAMCQLGRLKMML 109

Query: 272 SDTAGIRETDDIVE-----KEGIKRTFLEVENADLILLLKEIN---SKKEISFPK----- 318
            DT G+ E D + E     ++  ++    V  +D ++ + +     +  ++   +     
Sbjct: 110 HDTPGL-EDDSLTENSELLQKMRQKALEAVSRSDAVIFMVDAKEGVTPLDLKLARMLSKR 168

Query: 319 --------------------NIDFIFIGTKSDLYSTYTEEY-----------DHLISSFT 347
                                I  + +  K+D    +  +              +IS+  
Sbjct: 169 VRRLNELFKEKEQKGERSRPPISIVLVANKADGAQDFPTDAIADCYDLGLGDPVMISATK 228

Query: 348 GEGLEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
            EG ++L +++       L   +  +   +   K     + QT    E  SL   +   D
Sbjct: 229 NEGTDDLYDRLMLDVGDRLKGAWADMDEEVVERKDDEDAI-QTAMAREGPSLEMIEEMHD 287

Query: 404 IIAENLRLASVS 415
           I    L+ A   
Sbjct: 288 IW---LKEAIEY 296



 Score = 54.5 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 19/137 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
             +  +G  NAGKSSL NAL K++  I    PGTT D +  D     + +++ DTAG+  
Sbjct: 407 INMAFVGLPNAGKSSLVNALLKEERIITDTTPGTTTDTIVTDWSFREHKIRLFDTAGVFR 466

Query: 278 ---RETDDIVEKEGIKRTFLEVENADLILLLKE--------INSKKEISFPK-----NID 321
               + D  +   G + T   +  A +++++ +        + ++ E+   +        
Sbjct: 467 GWAYKGDKELMGPGSE-TQRAIRFAHVVVIVVDGSRAERSHVPNRAELKLLRMAVEMGKC 525

Query: 322 FIFIGTKSDLYSTYTEE 338
            +    K DL     +E
Sbjct: 526 VVVAINKWDLVEERHKE 542


>gi|152981217|ref|YP_001353061.1| GTP-binding protein Era [Janthinobacterium sp. Marseille]
 gi|151281294|gb|ABR89704.1| GTP-binding protein Era [Janthinobacterium sp. Marseille]
          Length = 300

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L    V+I +    TTR  +T    +E       DT G +   
Sbjct: 15  IAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRITGIQTVEDAQFVYVDTPGFQTRH 74

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSD 330
                + + RT    +  AD+IL + E       + +     PKN+  I +  KSD
Sbjct: 75  SNALNKTLNRTVTNTLTAADVILYVIEAGTFGQADQQVLDLIPKNVPCILVINKSD 130


>gi|168185421|ref|ZP_02620056.1| GTP-binding protein [Clostridium botulinum C str. Eklund]
 gi|169296536|gb|EDS78669.1| GTP-binding protein [Clostridium botulinum C str. Eklund]
          Length = 396

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 17/168 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   IV  G++N+GKSS+ NA+  +++++V+ + GTT D ++  ++ L    V   DTAG
Sbjct: 8   NRKHIVFYGNTNSGKSSILNAIIGQEISLVSSVEGTTTDPVSKAMELLPFGPVLFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           I +  ++     +++T   +   D  + + +IN+  E  + +        +I +I +  K
Sbjct: 68  INDNSELGSLR-VEKTLKTLNKTDFAIYVMDINNIDENRYMEFKEKFKKHSIPYITVINK 126

Query: 329 SDLYSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKL 369
            D        Y          +S+F  E +  L +++   L    ++ 
Sbjct: 127 VDTVDEDKINYIKNKFNDAIFVSAFNSESILNLKDELIKRLQKDEEEE 174


>gi|322436559|ref|YP_004218771.1| GTP-binding protein Era [Acidobacterium sp. MP5ACTX9]
 gi|321164286|gb|ADW69991.1| GTP-binding protein Era [Acidobacterium sp. MP5ACTX9]
          Length = 352

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 57/228 (25%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE----------- 265
           R+G+ + I+G  NAGKS+L NAL  + +AIVT  P TTR  +   L++            
Sbjct: 4   RSGF-VSIIGRPNAGKSTLLNALLGQKLAIVTHKPQTTRTRIHGVLEVPAKKKTKVGAIE 62

Query: 266 --GYL---VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------- 311
             G+    + + DT GI + D  ++K  ++     +E+ + +L + ++  +         
Sbjct: 63  TAGHPAAQIVLVDTPGIHKPDTQLDKRMMQEVHDALESRNAVLFIVDVTHRLPVAEVPGE 122

Query: 312 ------------------KEISFPKNIDFIFIGTKSDLYST-------------YTEEYD 340
                              ++    +   I +  K D  S              Y     
Sbjct: 123 KPKITGRMTLSAAEDDFSLQLVKKLDCPVILLLNKIDQISPAEIMPLIAHWSGLYKFAEI 182

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             +S+     L+ L++K+ + L    +  P    + +   + +++ +R
Sbjct: 183 IPVSARKKINLDLLLDKVVAHLPEGQRYFPKEQLTDQPERFLVAELIR 230


>gi|291556831|emb|CBL33948.1| GTP-binding protein HflX [Eubacterium siraeum V10Sc8a]
          Length = 419

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETD 281
            I+G++NAGKS+L NAL    V +  D    T D+ +  ++L +G  + + DT G+    
Sbjct: 209 AIVGYTNAGKSTLLNALTGAGV-LAEDKLFATLDLTSRAIELPDGRSLTLVDTVGLIRRL 267

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                E  K T  E  +AD+IL + + +  +     +             I  I +  K 
Sbjct: 268 PHHLVEAFKSTLEEAASADIILHVCDASDPEAREKAQTTLSLLSELGCGEIPVITVLNKC 327

Query: 330 DL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           D   Y     E   +IS+  G G +EL+  I   L++K  ++   IP  K  L   
Sbjct: 328 DKLDYELPPAENTVMISAKNGTGFDELLKAISDNLTDKVSRMEMLIPYDKSGLAAA 383


>gi|296269145|ref|YP_003651777.1| GTP-binding protein Era [Thermobispora bispora DSM 43833]
 gi|296091932|gb|ADG87884.1| GTP-binding protein Era [Thermobispora bispora DSM 43833]
          Length = 303

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 86/236 (36%), Gaps = 27/236 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+    +G  N GKS+L NAL    VAI +  P TTR  +   +      + I DT G
Sbjct: 8   RAGF-ACFVGRPNVGKSTLMNALVGTKVAITSSKPQTTRRAIRGIVHRPDAQLIIVDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
                 ++ +         +   D+I      N           +++   K    + I T
Sbjct: 67  FHRPRTLLGERLDSLVLSTLSEVDVIGFCIPANEPIGKGDRFITEKLKAVKETPVVAIVT 126

Query: 328 KSDLYSTYT--------------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D+ S                  E    +S+ +GE L+ L + + + L       P   
Sbjct: 127 KCDVASREQIVKQLVAVEQLVDFAEEIVPVSAVSGERLDVLTDLLVARLPVSPPLYPEGE 186

Query: 374 PSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL--RLASVSLGKITGCVDVE 426
            + +     +++ +R   +  + +E    + ++ E +  R     L +I   + VE
Sbjct: 187 LTDEPEQVLVAELIREAALEGVRDELPHSIAVVVEEMKPREDRDDLLEIYADIYVE 242


>gi|308811126|ref|XP_003082871.1| GTP-binding protein-like (ISS) [Ostreococcus tauri]
 gi|116054749|emb|CAL56826.1| GTP-binding protein-like (ISS) [Ostreococcus tauri]
          Length = 413

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 8/142 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  NAGKS+L N L    ++IVT  P TTR  +   +  + Y + + DT G+  E 
Sbjct: 115 VAIVGRPNAGKSTLMNDLVGTKLSIVTFKPQTTRHRILGIVSEDAYQMVLLDTPGVMVEE 174

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSDLYS 333
            + ++   +K     + NAD++  + +       ++        K +    I  K DL  
Sbjct: 175 FNKLDGIMLKSVRNSMANADVMFYIVDAARDPYGAWEGLAPKKGKRVPTALILNKCDLVG 234

Query: 334 TYTEEYDHLISSFTGEGLEELI 355
                 + +      +G+++++
Sbjct: 235 DRERIMELIDYFRAQDGIDDVL 256


>gi|226360374|ref|YP_002778152.1| GTP-binding protein Era [Rhodococcus opacus B4]
 gi|226238859|dbj|BAH49207.1| GTP-binding protein Era [Rhodococcus opacus B4]
          Length = 305

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 81/218 (37%), Gaps = 26/218 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    +AI +  P TTR  +   +  +   + + DT G
Sbjct: 7   RSGF-VCFVGRPNTGKSTLTNALVGSKIAITSSRPQTTRHTIRGIVHRDHAQLILVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIG 326
           +     ++ +             D+I L    + K          +          + I 
Sbjct: 66  LHRPRTLLGQRLNDLVRDTYSEVDVICLCIPADEKIGPGDRWIVQQVRQIAPKTTLVGIV 125

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D  S                 E     +S+ +GE +E L++ + S +       P  
Sbjct: 126 TKIDKVSKDMVGQQLLAVSQLLGPETDVVPVSAASGEQVEVLVDVLASKMEEGPAFYPDG 185

Query: 373 IPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL 409
             + +     +++ +R   +  L +E    L ++ E +
Sbjct: 186 ELTDEPEETLMAELIREAALEGLGDELPHSLAVVIEEI 223


>gi|118473800|ref|YP_887069.1| GTP-binding protein [Mycobacterium smegmatis str. MC2 155]
 gi|118175087|gb|ABK75983.1| GTP-binding protein [Mycobacterium smegmatis str. MC2 155]
          Length = 470

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 93/235 (39%), Gaps = 34/235 (14%)

Query: 188 SSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK-- 242
             + +   +  L+ +I     I   + G   R+    + I+G++NAGKSSL NAL     
Sbjct: 211 DRRRIRERMAKLRREIRDMKKIRDTQRGSRRRSEIPSVAIVGYTNAGKSSLLNALTGAGV 270

Query: 243 --DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + A+   +  TTR     + + +G    ++DT G          E  + T  EV +AD
Sbjct: 271 LVENALFATLEPTTR---RGEFE-DGRPFVLTDTVGFVRHLPTQLVEAFRSTLEEVVDAD 326

Query: 301 LILLLKEINSKKEISFPKNIDFI----------------FIGTKSDLYSTY-------TE 337
           L++ + + +    ++    +  +                 +  K D  +           
Sbjct: 327 LLIHVVDGSDVNPLAQINAVRTVINEVVAEYDIAPPPELLVVNKIDAATGVGLAQLRRAL 386

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
                +S+ TG+GL++L +++  ++ +    +  +IP  +  L     T  +++ 
Sbjct: 387 PDAVFVSARTGDGLDKLRSRMGELVESTDATVDVTIPYDRGDLVARVHTDGHVDA 441


>gi|256825566|ref|YP_003149526.1| GTP-binding proten HflX [Kytococcus sedentarius DSM 20547]
 gi|256688959|gb|ACV06761.1| GTP-binding proten HflX [Kytococcus sedentarius DSM 20547]
          Length = 517

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 81/214 (37%), Gaps = 23/214 (10%)

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            +  +      + +     +          +VI G++NAGKSSL N L +  V +   + 
Sbjct: 265 QMAKLRKQIAQMKTVRDTKRSSRKDHQVPSVVIAGYTNAGKSSLLNRLTRAGVLVENQLF 324

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T    +      +G +  ++DT G   +      E  + T  EV +ADL+L + + +  
Sbjct: 325 ATLDPTVRRTETADGRVFTLADTVGFVRSLPHQLVEAFRSTLEEVADADLVLHVVDGSHP 384

Query: 312 K-------------EISFPKNIDFI---FIGTKSDLYST-------YTEEYDHLISSFTG 348
                         E+   K  D +    +  K+D            TE+    +S+ TG
Sbjct: 385 DPENQISAVREVLSEVLDEKGADSMNEIIVINKADAADPEVVARLLRTEKRSIAVSARTG 444

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           +G+ EL   ++S L     ++   +P  +  L  
Sbjct: 445 QGITELRELVESELPRPDIEVDVVVPYERGDLVA 478


>gi|218297237|ref|ZP_03497893.1| GTP-binding protein Era [Thermus aquaticus Y51MC23]
 gi|218242430|gb|EED08970.1| GTP-binding protein Era [Thermus aquaticus Y51MC23]
          Length = 301

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 11/149 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L    VA ++  P TTR  L   L      +   DT G+ +  
Sbjct: 10  VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNIDFIFIGTKSDL 331
           D + +   +  +  + + + ++ + ++           +K        +  + +G K D 
Sbjct: 70  DALGEFMDQEVYEALADVNTVVWVVDLRHPPTPEDELVAKALKPLVGKVPILLVGNKLD- 128

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKS 360
            + Y EE      +   E    +++ +  
Sbjct: 129 EAKYPEEALKAYHALLPEAEPRMLSALDE 157


>gi|153208710|ref|ZP_01946957.1| GTP-binding protein Era [Coxiella burnetii 'MSU Goat Q177']
 gi|154707451|ref|YP_001423900.1| GTP-binding protein Era [Coxiella burnetii Dugway 5J108-111]
 gi|165919312|ref|ZP_02219398.1| GTP-binding protein Era [Coxiella burnetii RSA 334]
 gi|212219221|ref|YP_002306008.1| GTP-binding protein Era [Coxiella burnetii CbuK_Q154]
 gi|189037264|sp|A9KFA1|ERA_COXBN RecName: Full=GTPase Era
 gi|226741202|sp|B6J4J8|ERA_COXB1 RecName: Full=GTPase Era
 gi|120575821|gb|EAX32445.1| GTP-binding protein Era [Coxiella burnetii 'MSU Goat Q177']
 gi|154356737|gb|ABS78199.1| GTP-binding protein [Coxiella burnetii Dugway 5J108-111]
 gi|165916972|gb|EDR35576.1| GTP-binding protein Era [Coxiella burnetii RSA 334]
 gi|212013483|gb|ACJ20863.1| GTP-binding protein era [Coxiella burnetii CbuK_Q154]
          Length = 295

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 21/187 (11%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TD 281
            I+G  N GKS+L N L  + ++I +  P TTR  +      +   V   DT G+   T+
Sbjct: 10  AIIGRPNVGKSTLLNQLLGQKISITSRKPQTTRYQILGVKTFKDIQVIYVDTPGLHAGTE 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------DFIFIGTKSDLYSTY 335
             + +   +     + + D I+ + E + + + ++  +           +  K D     
Sbjct: 70  RTINRYMNRTARGALRDVDAIVFVIEPHWESQDAWVLDNLKEIETPVFLVINKVDKIKNR 129

Query: 336 TE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            E              +    +S+ TG+ +  L   +  ++       P    + +   +
Sbjct: 130 AELLPLIEKVSSLYAFQKIIPLSAKTGDQVGTLEQAVHQLMPESPFYFPPEQVTDRSDQF 189

Query: 382 HLSQTVR 388
             S+ +R
Sbjct: 190 MASEIIR 196


>gi|303233733|ref|ZP_07320387.1| GTP-binding protein Era [Finegoldia magna BVS033A4]
 gi|302495167|gb|EFL54919.1| GTP-binding protein Era [Finegoldia magna BVS033A4]
          Length = 294

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 78/199 (39%), Gaps = 23/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G SN GKS+L N +  + + I++D P TTR+ + +    E       DT GI+   
Sbjct: 7   VSVIGRSNVGKSTLLNRVLGEKLTIISDKPQTTRNKIQLIYTDENMQAIFLDTPGIQTPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD--- 330
           + +    +K +   +   D+I  + +   +         E     N   I +  K D   
Sbjct: 67  NKLGDYMLKVSMSTLNEVDVITYIVDTTEEIGKLDSEIIEKLRLVNTKIILLINKIDKIA 126

Query: 331 ------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 L   YT+    E    IS+  G+ +E  +  +++ L            + +   
Sbjct: 127 SDKVDELVEMYTKVGIFEQIIPISALNGDNVEGYLTSLRNTLPEGPMYYDKDSVTDQPIR 186

Query: 381 YHLSQTVRYLEMASLNEKD 399
             + + +R  E A +N  D
Sbjct: 187 QIVQELIR--EKALINLSD 203


>gi|167749119|ref|ZP_02421246.1| hypothetical protein EUBSIR_00063 [Eubacterium siraeum DSM 15702]
 gi|167657918|gb|EDS02048.1| hypothetical protein EUBSIR_00063 [Eubacterium siraeum DSM 15702]
          Length = 419

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETD 281
            I+G++NAGKS+L NAL    V +  D    T D+ +  ++L +G  + + DT G+    
Sbjct: 209 AIVGYTNAGKSTLLNALTGAGV-LAEDKLFATLDLTSRAIELPDGRSLTLVDTVGLIRRL 267

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                E  K T  E  +AD+IL + + +  +     +             I  I +  K 
Sbjct: 268 PHHLVEAFKSTLEEAASADIILHVCDASDPEAREKAQTTLSLLSELGCGEIPVITVLNKC 327

Query: 330 DL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           D   Y     E   +IS+  G G +EL+  I   L++K  ++   IP  K  L   
Sbjct: 328 DKLDYELPPAENTVMISAKNGTGFDELLKAISDNLTDKVSRMEMLIPYDKSGLAAA 383


>gi|167623018|ref|YP_001673312.1| GTP-binding protein Era [Shewanella halifaxensis HAW-EB4]
 gi|167353040|gb|ABZ75653.1| GTP-binding protein Era [Shewanella halifaxensis HAW-EB4]
          Length = 330

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 25/206 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +          V   DT G+  E 
Sbjct: 39  VAIVGRPNVGKSTLLNKLLGQKISITSKKPQTTRHRIMGIHTDGPRQVVFIDTPGLHMEE 98

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK------NIDFIFIGTKSD- 330
              + +   +     +    L++ + +        E+   K          I    K D 
Sbjct: 99  KRAINRLMNRAAASSLAEVALVIFVVDGMNWTPDDEMVLRKLQSRDDGRKTILAINKVDN 158

Query: 331 -------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                        L   +  +    IS+  G  ++ +++   + +       P    + +
Sbjct: 159 IKDKEALFPHLEELSKKFPFDEILPISATQGTNVQRILDMAVASVPEAQHYFPEDYVTDR 218

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLD 403
              +  S+ VR   M  L + +   D
Sbjct: 219 SQKFMASEIVREKLMRFLGD-ELPYD 243


>gi|295103343|emb|CBL00887.1| GTPases [Faecalibacterium prausnitzii SL3/3]
          Length = 214

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 17/204 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G++N GKSSL NAL    VA   D+   T D  +  L L  G  V + DT G    
Sbjct: 4   VSLVGYTNVGKSSLMNALCGPSVAE-ADMLFATLDPTSRKLVLPSGMAVLLVDTVGFVSR 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTK 328
                 E  K T  E   +D+I+ + +   ++                  +I  + +  K
Sbjct: 63  LPHNLVEAFKSTLEEAAWSDVIVRVADAGDEQREEQLAVTDEVLDGLDCTDIPRLTVYNK 122

Query: 329 SDLYSTYTEEYDH-LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
            D  +T + + D  L S+ TG GL++L+ K+  +LS++   +   +P  K  L    +  
Sbjct: 123 CDKPNTLSFDPDILLTSAKTGYGLDKLLQKLDEVLSDRVHTIRVLLPYDKLGLAAPMRER 182

Query: 388 RYLEMASLNEKDCGLD-II-AENL 409
             +++    E    L+ I+  E+L
Sbjct: 183 GSVQVEEYREDGLYLEGIVKTEDL 206


>gi|294340984|emb|CAZ89379.1| GTP-binding protein era [Thiomonas sp. 3As]
          Length = 301

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 7/116 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL    V+I +    TTR  +              DT G +   
Sbjct: 15  VAIVGRPNVGKSTLLNALVGAKVSITSHKAQTTRHRILGVTTRGASQFAFVDTPGFQTQH 74

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSD 330
                  + RT    +   DL+L + E       +       P +   I +  K D
Sbjct: 75  MHALNRAMNRTVTGALSEVDLVLWVLEAGKILPQDRTVLEVLPDDRPVIAVVNKLD 130


>gi|261855985|ref|YP_003263268.1| GTP-binding protein Era [Halothiobacillus neapolitanus c2]
 gi|261836454|gb|ACX96221.1| GTP-binding protein Era [Halothiobacillus neapolitanus c2]
          Length = 308

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ I+G  N GKSSL N L  + ++I    P TTR  +T  L      V   DT GI + 
Sbjct: 18  QVAIVGRPNVGKSSLLNRLVGQKISITAPKPQTTRHRITGILSEPRGQVVFVDTPGIHQG 77

Query: 281 DDIVEKEGIKRTFLE-VENADLILLLKEIN-------SKKEISFPKNIDFIFIGTKSDLY 332
                   + RT     +  DL+L + +            E+     +  I +  K DL 
Sbjct: 78  GSDALNRQLNRTARSGFDGVDLVLFVVQSGRFNEEDAGVLELIRQSGLPTILLINKIDLL 137

Query: 333 STYTEEYDHLISSFT 347
              T  +  L    T
Sbjct: 138 QDKTALFPFLAQMQT 152


>gi|225388053|ref|ZP_03757777.1| hypothetical protein CLOSTASPAR_01787 [Clostridium asparagiforme
           DSM 15981]
 gi|225045906|gb|EEG56152.1| hypothetical protein CLOSTASPAR_01787 [Clostridium asparagiforme
           DSM 15981]
          Length = 427

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 105/297 (35%), Gaps = 41/297 (13%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L G     L+ +   I       ++ +V      E +  +     D+  H
Sbjct: 130 LAQLKYRAARLVG-MRASLSRLGGGIGTRGPGEKKLEVDRRLIHERIGQLKAELEDVKRH 188

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
               +            I+G++NAGKS+L N L   D+ +  D    T D  T    L G
Sbjct: 189 REVTRQQREQGCAVSAAIVGYTNAGKSTLLNHLTDADI-LAEDKLFATLDPTTRSFTLPG 247

Query: 267 -YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------- 312
              + ++DT G          E  K T  E + +D+IL + + ++ +             
Sbjct: 248 DQQILLTDTVGFIRKLPHHLIEAFKSTLEEAKYSDIILHVVDCSNPQMDMQMHVVRETLK 307

Query: 313 EISFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELIN 356
           ++        + +  K+D                L   ++ +Y   IS+ TGEGL+EL  
Sbjct: 308 DLEIVDKT-VVTVFNKTDRLRAMVESGEAGPLAQLPRDFSADYQVRISAKTGEGLDELCG 366

Query: 357 KIKSILSNKFKKLPFSIPSHK-------RHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
            ++ I+ ++   L    P  +       R    L +   Y E     E     ++ A
Sbjct: 367 ILEQIIRSRRVHLEKVYPYSQAGRIQTIRKYGQLLK-EEYTEDGIAVEAYVPAELFA 422


>gi|325123515|gb|ADY83038.1| GTP-binding protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 447

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/328 (18%), Positives = 118/328 (35%), Gaps = 34/328 (10%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + T E + ++ +  +    + L   W       +  I         E       + + 
Sbjct: 114 LRARTHEGKLQVELAQLKHLSTRLIRGWSADFEQQKGGIGLR---GPGETQLETDRRLIR 170

Query: 194 NDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             I  LK+ +         G   R       + ++G++NAGKS+LFN LA  DV    D 
Sbjct: 171 VRITQLKDKLDKVQQTRMQGRAARQKAAIPTVSLVGYTNAGKSTLFNILANSDV-YAADQ 229

Query: 251 PGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D     LD +G   V ++DT G          E  K T  E   A L+L + + +
Sbjct: 230 LFATLDPTLRRLDWDGIGTVVLADTVGFVRNLQHDLVESFKATLEETLEATLLLHVIDSS 289

Query: 310 SKKEISFPK-----------NIDFIFIGTKSDLYSTYTEEY--------DHLISSFTGEG 350
           S   +   +           +   + +  K DL     +             +S+ +G+G
Sbjct: 290 SHDMLDQIEAVEGVLKDIGADAPVLRVYNKIDLSGEEAKIIYAEPHVPDRVYVSAHSGQG 349

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           LE L   ++  L  + +K    +      L      +  +E    ++      ++  +++
Sbjct: 350 LELLQKAVQECLMGQIQKFSLVLKPAYGKLRTQLYALNVIESEHYDDAG----LLHIDVK 405

Query: 411 LASVSLGKITGCVD--VEQLLDIIFSKF 436
           +A   L K+       ++++L    S+F
Sbjct: 406 IAPHKLEKLIRQAKLPLDEILGEHASQF 433


>gi|134095252|ref|YP_001100327.1| GTP-binding protein Era [Herminiimonas arsenicoxydans]
 gi|133739155|emb|CAL62204.1| GTP-binding protein Era [Herminiimonas arsenicoxydans]
          Length = 300

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L    V+I +    TTR  +T    ++       DT G +   
Sbjct: 15  IAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRITGIQTVDDAQFVYVDTPGFQTRH 74

Query: 282 DIVEKEGIKRTF-LEVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSD 330
                + + RT    +  +D+IL + E       + +     PKN+  I +  KSD
Sbjct: 75  SNALNKTLNRTVTTTLTASDVILFVIEAGTFGQADQQVLDLIPKNVPCILVINKSD 130


>gi|118589883|ref|ZP_01547287.1| GTP binding protein-like [Stappia aggregata IAM 12614]
 gi|118437380|gb|EAV44017.1| GTP binding protein-like [Stappia aggregata IAM 12614]
          Length = 426

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 36/303 (11%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T+  R    +  ++ + S L   W   L   R          E +       +++ +
Sbjct: 115 RARTKEGRLQVDLAHLTWQKSRLVRSWTH-LERQRGGAGFMGGPGETQI--EADRRQIQD 171

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I+ L+  +        L    R       + ++G++NAGKS+LFN + + DV     + 
Sbjct: 172 RIIALQKQLEQVRRTRDLHRKKRKKIPQPVVALVGYTNAGKSTLFNRMTESDVFAKDLLF 231

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T    L       G  + +SDT G             + T  EV  ADLIL +++I+  
Sbjct: 232 ATLDPTLRKVALPHGKEIILSDTVGFISDLPTHLVAAFRATLEEVLEADLILHVRDISHP 291

Query: 312 KEISFPKNI---------------DFIFIGTKSD---------LYSTYTEEYDHLISSFT 347
              +  +++                 I +  K D         L     +E    +S+ T
Sbjct: 292 DTEAQAEDVKKTLTDLGVDALTGAPIIEVWNKIDCLDPAYREKLLEDAGDEGPIALSALT 351

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           GEG+E+L  ++ + ++     L   IP     L       +  +MA + E+    D +  
Sbjct: 352 GEGIEQLYTRVDTFMAQHDDILTVKIPVADGALLA-----KLYQMAEVLERTDAEDFVTA 406

Query: 408 NLR 410
            +R
Sbjct: 407 EVR 409


>gi|153951129|ref|YP_001398383.1| GTP-binding protein Era [Campylobacter jejuni subsp. doylei 269.97]
 gi|189037257|sp|A7H4F3|ERA_CAMJD RecName: Full=GTPase Era
 gi|152938575|gb|ABS43316.1| GTP-binding protein Era [Campylobacter jejuni subsp. doylei 269.97]
          Length = 291

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVIHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKE----ISFPKNIDFIFIGTKSD 330
           G+ E+     +  ++     +E+ D+IL +  + +S K+    +S    +  I    K D
Sbjct: 60  GLHESGATFNQLLVQSAIKSMEDCDVILFVASVFDSTKDYENFLSLNPQVSHIIALNKVD 119

Query: 331 LYSTYT 336
           L    T
Sbjct: 120 LTDNAT 125


>gi|294670669|ref|ZP_06735544.1| hypothetical protein NEIELOOT_02391 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307557|gb|EFE48800.1| hypothetical protein NEIELOOT_02391 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 308

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 24/196 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R G+ I I+G  N GKS+L N L  + ++I +    TTR  +T     +       DT 
Sbjct: 17  YRCGF-IAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRHKVTGIYTDDTAQFVFVDTP 75

Query: 276 GIRETDDIVEKEGIKRTF-LEVENADLILLLKEINSKKEIS------FPKNIDFIFIGTK 328
           G +        + + +     +   D ++ + E     E         PK+   I    K
Sbjct: 76  GFQTDHRNALNDRLNQNVTEALTGIDAVVFVVEAMRLTEADRTVIKQLPKHTPVILAVNK 135

Query: 329 ----------------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                            D+   +       +S+  G  +  L+  +K+ L       P  
Sbjct: 136 IDKDKAKDKYALQAFIDDVRREFDFAAAEAVSAKHGLRIANLLELLKTYLPESVPMYPED 195

Query: 373 IPSHKRHLYHLSQTVR 388
           + + K   +   + VR
Sbjct: 196 MVTDKSSRFLAMEIVR 211


>gi|254293935|ref|YP_003059958.1| GTP-binding protein Era [Hirschia baltica ATCC 49814]
 gi|254042466|gb|ACT59261.1| GTP-binding protein Era [Hirschia baltica ATCC 49814]
          Length = 331

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 4/112 (3%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           K DI + + + +     R G+ + ++G  NAGKS+L N L    V+IVT    TTR  + 
Sbjct: 10  KEDIEASLQEPRE---TRAGF-VAVIGSPNAGKSTLVNRLVGAKVSIVTHKVQTTRFQVR 65

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
             +      V + DT GI      +++  +K  +   E AD I+ L + +S+
Sbjct: 66  GVMMRGDAQVVLVDTPGIFAPKHRLDRAMVKSAWDGAEGADQIIHLVDASSR 117


>gi|284032597|ref|YP_003382528.1| GTP-binding proten HflX [Kribbella flavida DSM 17836]
 gi|283811890|gb|ADB33729.1| GTP-binding proten HflX [Kribbella flavida DSM 17836]
          Length = 496

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 99/268 (36%), Gaps = 28/268 (10%)

Query: 137 SETEMQRRLSMEG-MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++ E+ +   M+  + G   +L  Q   ++      I        + +         ++ 
Sbjct: 190 AQVELAQLQYMKQRLRGWGGNLSRQAGGRVGAAGGGIGGRGPGETKIETDRRRINTKISK 249

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK----DVAIVTDIP 251
           +     ++    +  +      +   + I G++NAGKSSL NA+       + A+   + 
Sbjct: 250 LRRELKEMKGTRTTMRQERRRHSVPSVAIAGYTNAGKSSLLNAITGAGVLVENALFATLD 309

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            TTR   T     +G +   +DT G          E  + T  EV +ADL+L + + +  
Sbjct: 310 PTTRKTTTA----DGRVYTFTDTVGFVRHLPHDIVEAFRSTLEEVADADLLLHVVDGSHP 365

Query: 312 KEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLI-------SSFTGEGLE 352
             ++  +            ++  I +  K D+                   S+ TGEG++
Sbjct: 366 DPLAQIQAVREVLHEIGATDVPEIIVINKGDVADPMALAPILHRETGAIVVSARTGEGID 425

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +L  ++++ L      +   +P  +  L
Sbjct: 426 KLRAQVEAALPQPHITVDALLPYDRGDL 453


>gi|84500560|ref|ZP_00998809.1| GTP-binding protein Era [Oceanicola batsensis HTCC2597]
 gi|84391513|gb|EAQ03845.1| GTP-binding protein Era [Oceanicola batsensis HTCC2597]
          Length = 301

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-VALIGEPNAGKSTLTNRMVGAKVSIVTHKVQTTRARIRGVAIEGDSQIVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           + +    +++  +   +  V +ADL +LL E +           +      K        
Sbjct: 63  LFQPRRRLDRAMVAAAWSGVADADLTVLLVEAHRGVTPGVEKILETLQQMAKGRRVALAI 122

Query: 327 TKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            K D             L + Y  E   +IS+  G G+++L   + + +  
Sbjct: 123 NKIDRVEAKQLLDLTERLNAAYPFEKTFMISAEKGHGVQDLKEWLAAEMPE 173


>gi|40063417|gb|AAR38228.1| GTP-binding protein Era [uncultured marine bacterium 580]
          Length = 297

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 75/209 (35%), Gaps = 23/209 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N      ++I +    TTR  L      +       DT G +   
Sbjct: 13  IAIVGQPNVGKSTLLNYFVGSKLSITSRKAQTTRYQLVGIFTDKDTQYIFVDTPGYQLKH 72

Query: 282 -DIVEKEGIKRTFLEVENADLILLL-----KEINSKKEIS-FPKNIDFIFIGTKSDLYST 334
            + + K   K     +++ DLIL L      +   KK +   P +   + I  K DL   
Sbjct: 73  LNQMNKSLNKSVNQALKDVDLILFLSEPNELDATDKKILQMIPNSTPILLIINKIDLIKD 132

Query: 335 YTE------EYDH--------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            ++      E DH          S      L EL+  +K  L  +         + K   
Sbjct: 133 KSKILALMSEADHLDKFEEIVPTSVKKKNNLLELLESVKKYLPQQPFIYDQDELTDKGER 192

Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           +   + VR  ++  L  ++     +A  +
Sbjct: 193 FLAGEIVRE-KLFRLTGQEVPYS-VAVEI 219


>gi|297202839|ref|ZP_06920236.1| GTP-binding protein HflX [Streptomyces sviceus ATCC 29083]
 gi|297148230|gb|EDY61685.2| GTP-binding protein HflX [Streptomyces sviceus ATCC 29083]
          Length = 498

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 112/303 (36%), Gaps = 32/303 (10%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS--EEEDVQNFSSKEV 192
            +++     ++++  M   +      W   L+      +     +    E       + +
Sbjct: 186 HAKSREGKAQVALAQMQ-YMLPRLRGWGQSLSRQMGGGKGGGLATRGPGETKIETDRRRI 244

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTD 249
              +  ++ +I+   +  ++    R  +K+    I G++NAGKSSL N L    V +   
Sbjct: 245 REKMAKMRREIADMKTGREIKRQERKRHKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENA 304

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-- 307
           +  T    +       G L  ++DT G          E  + T  EV  +DLIL + +  
Sbjct: 305 LFATLDPTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGESDLILHVVDGS 364

Query: 308 -INSKKEISFPK---------NIDFIFIGTKSDLYSTYT-------EEYDHLISSFTGEG 350
             N +++++  +          +  I +  K+D     T       E+    +S+ TG+G
Sbjct: 365 HPNPEEQLAAVREVVRDVGATGVPEIVVINKADAADPLTLQRLMRIEKRSIAVSARTGQG 424

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ------TVRYLEMASLNEKDCGLDI 404
           + EL+  I + L     ++   +P     L   +       +  +    +L +     ++
Sbjct: 425 IPELLALIDNELPRPSVEIEALVPYTHGKLVARAHDEGEVISEEHTAEGTLLKVRVHEEL 484

Query: 405 IAE 407
            AE
Sbjct: 485 AAE 487


>gi|291531610|emb|CBK97195.1| GTP-binding protein HflX [Eubacterium siraeum 70/3]
          Length = 419

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 16/176 (9%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETD 281
            I+G++NAGKS+L NAL    V +  D    T D+ +  ++L +G    + DT G+    
Sbjct: 209 AIVGYTNAGKSTLLNALTGAGV-LAEDKLFATLDLTSRAIELPDGRSFTLVDTVGLIRRL 267

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                E  K T  E  +AD+IL + + +  +     +             I  I +  K 
Sbjct: 268 PHHLVEAFKSTLEEAASADIILHVCDASDPEAREKGQTTLSLLSELGCGEIPVITVLNKC 327

Query: 330 DL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           D   Y     E   +IS+  G G +EL+  I   L++K  ++   IP  K  L   
Sbjct: 328 DKLDYELPPAENTVMISAKNGTGFDELLKAISDNLTDKVSRMEMLIPYDKSGLAAA 383


>gi|283953976|ref|ZP_06371505.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 414]
 gi|283794581|gb|EFC33321.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 414]
          Length = 265

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 6/126 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ +  +G +NAGKS+L N+L  + +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSTIGRTNAGKSTLINSLLGEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKE----ISFPKNIDFIFIGTKSD 330
           G+ E+     +  I+     + + D+IL +  + +S K+    +S    +  I    K D
Sbjct: 60  GLHESGATFNQLLIQSAIKSIGDCDVILFVASVFDSVKDYENFLSLNPQVPHIIALNKVD 119

Query: 331 LYSTYT 336
           L    T
Sbjct: 120 LTDNAT 125


>gi|118444546|ref|YP_877567.1| GTP-binding protein [Clostridium novyi NT]
 gi|118135002|gb|ABK62046.1| GTP-binding protein [Clostridium novyi NT]
          Length = 396

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 17/168 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   IV  G++N+GKSS+ NA+  +++++V+ + GTT D ++  ++ L    V   DTAG
Sbjct: 8   NRKHIVFYGNTNSGKSSILNAIIGQEISLVSSVEGTTTDPVSKAMELLPFGPVLFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           I +  ++     +++T   +   D  + + +IN+  E  + +        +I +I +  K
Sbjct: 68  INDNSELGSLR-VEKTLKTLNKTDFAIYVMDINNIDENQYSEFKEKFKKHSIPYITVINK 126

Query: 329 SDLYSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKL 369
            D                   +S+F  E +  L +++   L N  ++ 
Sbjct: 127 IDTVDEEKINSIKNKFSDAIFVSAFNSESILTLKDELIKRLENHEEEE 174


>gi|300813883|ref|ZP_07094188.1| GTP-binding protein Era [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512070|gb|EFK39265.1| GTP-binding protein Era [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 297

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 83/199 (41%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G +N GKS++ N+L  + ++ +++   TTR+ ++     +   +   DT GI++  
Sbjct: 9   VSIVGRANVGKSTMLNSLIGQKISAISNKAQTTREKISFIYTDKDCQIVFLDTPGIQKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
           + +    +  +   +  AD+I  + + + K           +   K+   I +  K DL 
Sbjct: 69  NKLGNFMLNESLSSLSEADIITYIVDTSKKIGNLDSSIIDTLKKLKDKKIILLINKIDLI 128

Query: 333 ST-----YTEEYD--------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           +        E YD          IS+   +G++E I  IK  LS      P    + K  
Sbjct: 129 AKEELFPIIEAYDKIGIFSHIIPISAMKNDGVDEYIEVIKENLSPGPMFYPEDYVTDKSE 188

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +   + +R   +  L E+
Sbjct: 189 KFLAEEIIREKGLRFLQEE 207


>gi|83858197|ref|ZP_00951719.1| GTP-binding protein Era [Oceanicaulis alexandrii HTCC2633]
 gi|83853020|gb|EAP90872.1| GTP-binding protein Era [Oceanicaulis alexandrii HTCC2633]
          Length = 307

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 81/205 (39%), Gaps = 34/205 (16%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
              R G+ + I+G  NAGKS+L NAL  + V+IVT    TTR  +   +      + + D
Sbjct: 5   NATRAGF-VAIIGAPNAGKSTLVNALVGRKVSIVTPKVQTTRFQVRGVMMHGSAQLVLVD 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------------NSKKEISFPKNID 321
           T G+      +++  +   +   ++AD I+ + +             + ++ I   K  +
Sbjct: 64  TPGVFAPRRRLDRAMVASAWEGADDADAIVHVVDAAAQLSQARRTVEDVERVIDGLKAHE 123

Query: 322 FI--FIGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                +  K D             LY T       +IS+  G+ +++L + + +++    
Sbjct: 124 LKAVLVLNKIDLIKREELLDLSQKLYETGVYSDVFMISASNGDRIKDLADFLVTLMP--- 180

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLE 391
                     +  +  LS+ +   E
Sbjct: 181 ---ESPYLYPEDQIADLSERMLAAE 202


>gi|309811288|ref|ZP_07705077.1| GTP-binding protein HflX [Dermacoccus sp. Ellin185]
 gi|308434770|gb|EFP58613.1| GTP-binding protein HflX [Dermacoccus sp. Ellin185]
          Length = 508

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 21/228 (9%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  +     ++ +     + G    N   + I G++NAGKSS+ N L    V +   +  
Sbjct: 261 MAKLRREIAEMKTTRDTKRSGRRNNNVPSVAIAGYTNAGKSSILNRLTNAGVLVQNQLFA 320

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T    +      +G    ++DT G          E  + T  EV +ADL+L + + +   
Sbjct: 321 TLDPTVRRAETADGRAYTLADTVGFVRDLPHQLVEAFRSTLEEVADADLLLHVVDGSHPD 380

Query: 313 EIS------------FPKNIDFIFIGTKSDLYSTYT-------EEYDHLISSFTGEGLEE 353
             S               ++  I +  K+D+            E+Y   +S+ TG GL E
Sbjct: 381 PESQISAVREVLADVDASDVKEIIVINKADVADPDVIDRLMRHEKYAIAVSARTGAGLPE 440

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           L+  I   L    +++   +P  +  L  LS+     E+ S+  +  G
Sbjct: 441 LLQLIADELPKPERRVDVLLPYERGDL--LSRLHADAEVLSIEHRGEG 486


>gi|160872143|ref|ZP_02062275.1| GTP-binding proten HflX [Rickettsiella grylli]
 gi|159120942|gb|EDP46280.1| GTP-binding proten HflX [Rickettsiella grylli]
          Length = 366

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 92/255 (36%), Gaps = 24/255 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E Q ++ +  +    + L   W   L   R  I        + +      ++ + 
Sbjct: 114 RARTFEGQLQVKLAQLEHLSTRLIRGWTH-LERQRGGIGLRGPGETQLETDKRLIRQQIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +    +Q +          I ++G++N GKS+LFN L + +V I  + P  T
Sbjct: 173 TIKKRLEKVRRQRAQSQRARKKSKAPYISLVGYTNTGKSTLFNRLTQSNVLI-ANQPFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--NSKK 312
            D     + L G +  ++DT G             + T  E ++ADL+L + +     KK
Sbjct: 232 LDPSIRRMSLNGKIAILADTVGFIRHLPHHLIAAFRATLEETQHADLLLHVVDAANTEKK 291

Query: 313 EISFPKNIDFI----------FIGTKSDLYSTYTEEYD---------HLISSFTGEGLEE 353
           E +   +               +  K D  +  +   +           IS+    G++ 
Sbjct: 292 ECTHAVDHVLKRIHTVPITQLIVVNKIDRLNDSSPRLERSATGLPTKVWISAQFALGIDL 351

Query: 354 LINKIKSILSNKFKK 368
           L + +   L+ +  +
Sbjct: 352 LKSAVIECLAYQTNQ 366


>gi|302545484|ref|ZP_07297826.1| GTP-binding protein Era [Streptomyces hygroscopicus ATCC 53653]
 gi|302463102|gb|EFL26195.1| GTP-binding protein Era [Streptomyces himastatinicus ATCC 53653]
          Length = 343

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+    +G  NAGKS+L NAL    VAI ++ P TTR  +   +      + + DT G
Sbjct: 43  RSGF-ACFVGRPNAGKSTLTNALVGTKVAITSNRPQTTRHTVRGIVHRPDAQLVLVDTPG 101

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++ +             D+I      + K          E++  K    + I T
Sbjct: 102 LHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDRFIAAELAGIKKTPKVAIVT 161

Query: 328 KSDLYST 334
           K+DL  +
Sbjct: 162 KTDLVES 168


>gi|282882517|ref|ZP_06291138.1| GTP-binding protein Era [Peptoniphilus lacrimalis 315-B]
 gi|281297659|gb|EFA90134.1| GTP-binding protein Era [Peptoniphilus lacrimalis 315-B]
          Length = 297

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 83/199 (41%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G +N GKS++ N+L  + ++ +++   TTR+ ++     +   +   DT GI++  
Sbjct: 9   VSIVGRANVGKSTMLNSLIGQKISAISNKAQTTREKISFIYTDKDCQIVFLDTPGIQKPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
           + +    +  +   +  AD+I  + + + K           +   K+   I +  K DL 
Sbjct: 69  NKLGNFMLNESLSSLSEADIITYIVDTSKKIGKLDSSIIDTLKKLKDKKIILLINKIDLI 128

Query: 333 ST-----YTEEYD--------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           +        E YD          IS+   +G++E I  IK  LS      P    + K  
Sbjct: 129 AKEELFPIIEAYDKIGIFSHIIPISAMKNDGVDEYIEVIKENLSPGPMFYPEDYVTDKSE 188

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +   + +R   +  L E+
Sbjct: 189 KFLAEEIIREKGLRFLQEE 207


>gi|269127476|ref|YP_003300846.1| GTP-binding proten HflX [Thermomonospora curvata DSM 43183]
 gi|268312434|gb|ACY98808.1| GTP-binding proten HflX [Thermomonospora curvata DSM 43183]
          Length = 485

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 22/219 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGK--LGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+  I+      +       RN    + I G++NAGKSSL N L   
Sbjct: 226 ELDRRRIRARMAKLRRQIAEMAKTRETMRSNRRRNRIPSVAIAGYTNAGKSSLLNRLTGA 285

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +       G    ++DT G          E  + T  EV  ADLI
Sbjct: 286 GVLVEDALFATLDPTVRRAQTPSGRPFTLADTVGFVRHLPHQLVEAFRSTLEEVTQADLI 345

Query: 303 LLLKE---------INSKKEISFPKNIDFI---FIGTKSDLYSTYT-------EEYDHLI 343
           L + +         I++ +++      D +    +  K+D     T       E    ++
Sbjct: 346 LHVVDGSDAEPEAQIDAVRQVLREIGADRVPELVVINKADAADPLTLARLRRREPGSVVV 405

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           S+ TG G+EEL+  I++ L    +++   +P  +  L  
Sbjct: 406 SARTGAGIEELMAAIEAELPEVGREVRVVLPYERGDLVA 444


>gi|113971182|ref|YP_734975.1| GTP-binding protein Era [Shewanella sp. MR-4]
 gi|114048420|ref|YP_738970.1| GTP-binding protein Era [Shewanella sp. MR-7]
 gi|117921464|ref|YP_870656.1| GTP-binding protein Era [Shewanella sp. ANA-3]
 gi|113885866|gb|ABI39918.1| GTP-binding protein Era [Shewanella sp. MR-4]
 gi|113889862|gb|ABI43913.1| GTP-binding protein Era [Shewanella sp. MR-7]
 gi|117613796|gb|ABK49250.1| GTP-binding protein Era [Shewanella sp. ANA-3]
          Length = 339

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 71/214 (33%), Gaps = 26/214 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +          +   DT G+  E 
Sbjct: 48  VAIIGRPNVGKSTLLNRLLGQKISITSKKPQTTRHRIMGIHTDGPRQIVFIDTPGLHIEE 107

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK------NIDFIFIGTKSD- 330
              + +   +     + +  +++ + +     +  E+   K          +    K D 
Sbjct: 108 QRAINRLMNRAAASSLADVSMVIFVVDGMTWTADDEMVLSKLRRGGEERKTVLAINKVDN 167

Query: 331 -------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                        +   Y  +    IS+  G  ++ ++      L       P    + +
Sbjct: 168 IKDKEALFPYLEEVAKKYPFDEILPISASKGTNVKRILEMAAESLPENPFFFPEDYVTDR 227

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
              +  S+ VR   M  L + +   D     +  
Sbjct: 228 SQRFMASEIVREKLMRFLGD-ELPYD-ATVEIEQ 259


>gi|289423237|ref|ZP_06425048.1| small GTP-binding protein [Peptostreptococcus anaerobius 653-L]
 gi|289156337|gb|EFD04991.1| small GTP-binding protein [Peptostreptococcus anaerobius 653-L]
          Length = 417

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 2/94 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   IV+LG  N+GKSS+FN L  +D +IV D  GTT D +   ++L  Y  VKI DTAG
Sbjct: 7   NRKNIVLLGRRNSGKSSIFNLLIDQDKSIVADYLGTTTDPVYHMMELLPYGPVKIVDTAG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           I +   + +K  + +T LE+E+ADL++ + + N 
Sbjct: 67  IDDEGLVGQKR-VDKTRLEIEDADLLVYVIDAND 99


>gi|46200176|ref|YP_005843.1| GTP-binding protein Era [Thermus thermophilus HB27]
 gi|55980089|ref|YP_143386.1| GTP-binding protein Era [Thermus thermophilus HB8]
 gi|81364712|sp|Q5SM23|ERA_THET8 RecName: Full=GTPase Era
 gi|56966801|pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
           Thermus Thermophilus Hb8
 gi|46197804|gb|AAS82216.1| GTP-binding protein era [Thermus thermophilus HB27]
 gi|55771502|dbj|BAD69943.1| GTP-binding protein Era [Thermus thermophilus HB8]
          Length = 301

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 12/159 (7%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E   +G+ + I+G  N GKS+L N L    VA ++  P TTR  L   L      +  
Sbjct: 1   MAEKTYSGF-VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNID 321
            DT G+ +  D + +   +  +  + + + ++ + ++           ++        + 
Sbjct: 60  VDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP 119

Query: 322 FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
            + +G K D  + Y EE          E    +++ +  
Sbjct: 120 ILLVGNKLD-AAKYPEEAMKAYHELLPEAEPRMLSALDE 157


>gi|290956958|ref|YP_003488140.1| GTP-ase [Streptomyces scabiei 87.22]
 gi|260646484|emb|CBG69581.1| putative GTP-ase [Streptomyces scabiei 87.22]
          Length = 498

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 96/265 (36%), Gaps = 26/265 (9%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS--EEEDVQNFSSKEV 192
            +++     ++++  M   +      W   L+      +     +    E       + +
Sbjct: 187 HAKSREGKAQVALAQMQ-YMLPRLRGWGQSLSRQMGGGKGGGLATRGPGETKIETDRRRI 245

Query: 193 LNDILFLKNDISSHI--SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTD 249
              +  ++ +I+      + K  E  RN    + I G++NAGKSSL N L    V +   
Sbjct: 246 REKMAKMRREIAEMKTGREIKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENA 305

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  T    +       G L  ++DT G          E  + T  EV +ADLIL + + +
Sbjct: 306 LFATLDPTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDADLILHVVDGS 365

Query: 310 SKKEISFPK------------NIDFIFIGTKSDLYSTYT-------EEYDHLISSFTGEG 350
                                 +  I +  K+D     T       E+    +S+ +G+G
Sbjct: 366 HPAPEEQLAAVREVIRDVGATKVPEIVVINKADAADPLTLQRLLRVEKRSIAVSARSGQG 425

Query: 351 LEELINKIKSILSNKFKKLPFSIPS 375
           ++EL+  I + L     ++   +P 
Sbjct: 426 IQELLALIDNELPRPSVEIEALVPY 450


>gi|315230080|ref|YP_004070516.1| ferrous iron transport protein B [Thermococcus barophilus MP]
 gi|315183108|gb|ADT83293.1| ferrous iron transport protein B [Thermococcus barophilus MP]
          Length = 665

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 31/237 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G+ N GK++LFNAL       V + PG T +     +  +G    + D  G     
Sbjct: 5   IALAGNPNVGKTTLFNALTGL-RQHVGNWPGVTVEKKEGIMKYKGREFLVVDLPGTYSLT 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYST 334
                E I R F+   NAD+I+ + + +          EI      + +    K DL   
Sbjct: 64  AHSVDELIARNFILEGNADVIVDVVDSSCLMRNLFLTMEILEMGVKNVVIALNKIDLAEK 123

Query: 335 YTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH---KRH 379
              ++D               ++  G G+EEL  KI ++   K    P         +R 
Sbjct: 124 KGIKFDFKKMEKVLGIPVVPTNAKDGTGIEELKKKIVAVADGKITVNPVVPVYDDIIERE 183

Query: 380 LYHLSQTVRYLEMASL-NEKDCGLDIIAEN---LRLASVSLGKITGCVDVEQLLDII 432
           + H+S+ ++   +A   N +   + ++  +   ++L    L    G   ++++L  I
Sbjct: 184 ISHISEILKETALAERYNLRWLAIKLLTRDEEVIKLVLSHL----GHEKMDEILHHI 236


>gi|331092167|ref|ZP_08340997.1| GTP-binding protein HflX [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330401939|gb|EGG81513.1| GTP-binding protein HflX [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 415

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 107/295 (36%), Gaps = 35/295 (11%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           +S +E + ++ +  +    S L G     L+ +   I       ++ ++     K  +  
Sbjct: 119 ASTSEGKIQVELAQLKYRQSRLVG-LGKSLSRLGGGIGTRGPGEKKLEMDRRLIKGRIAQ 177

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +     ++  H    +      +   + I+G++NAGKS+L N L    V +  D    T 
Sbjct: 178 LNRELKEVKRHREVTREQRNRNHLPVVAIVGYTNAGKSTLLNKLTGASV-LEEDKLFATL 236

Query: 256 DVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D  T  L L+    + ++DT G          E  K T  E + AD+IL + + ++ +  
Sbjct: 237 DPTTRGLKLQSKQEILLTDTVGFIRKLPHHLIEAFKSTLEEAKYADIILHVVDASNPQLD 296

Query: 315 SFPK------------NIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEGLEELIN 356
                           N   I    K D      +   +  +Y   IS+ TGEGL  L+ 
Sbjct: 297 EQMHIVYETLQQLEVVNKPIITAFNKQDKADGEMIIRDFKADYIVKISAKTGEGLSGLLE 356

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            I+ +L              ++    + +   Y E   +       +++ E  R 
Sbjct: 357 TIEEVL--------------RQQKVLVERIYSYAEAGKIQLIRKYGELLTEEYRE 397


>gi|298674508|ref|YP_003726258.1| GTP-binding protein HflX [Methanohalobium evestigatum Z-7303]
 gi|298287496|gb|ADI73462.1| GTP-binding protein HflX [Methanohalobium evestigatum Z-7303]
          Length = 418

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 29/225 (12%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL---GHSNAGKSS 234
           F    + ++   +++ N I  +KN++ +     +     R+     ++   G++NAGKS+
Sbjct: 146 FMSLGEYEDSYEQDIKNRISRIKNELKTAKKDRESLRKFRHDKGFSLVALAGYTNAGKST 205

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           LFN +  +DV  V D+  TT   +T  L+L G  V ++DT G  E       +  + T  
Sbjct: 206 LFNTIVDEDV-RVEDMLFTTLSPVTRSLNLGGRHVLLTDTVGFIEDLPHWMIDAFRSTLD 264

Query: 295 EVENADLILLLKEINSKKEISFPK-------------NIDFIFIGTKSDLYS-------- 333
           E+   D+ILL+ ++    E    K                 I +  K D           
Sbjct: 265 EIFLTDVILLVVDVAEDAEKIRKKLATSHEILWNKSEGAPIITVLNKVDAIKSDELNKKL 324

Query: 334 ---TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
               Y       IS+ +G GL+ L  +I   +    K+   S+P 
Sbjct: 325 DKIEYLAPNPVFISAKSGYGLDNLKKQINQQVPGW-KRTSVSLPM 368


>gi|302554600|ref|ZP_07306942.1| GTP-binding protein HflX [Streptomyces viridochromogenes DSM 40736]
 gi|302472218|gb|EFL35311.1| GTP-binding protein HflX [Streptomyces viridochromogenes DSM 40736]
          Length = 497

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 102/265 (38%), Gaps = 26/265 (9%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS--EEEDVQNFSSKEV 192
            +++     ++++  M   +      W   L+      +     +    E       + +
Sbjct: 186 HAKSREGKAQVALAQMQ-YMLPRLRGWGQSLSRQMGGGKGGGLATRGPGETKIETDRRRI 244

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTD 249
              +  ++ +I+   +  ++    R  +K+    I G++NAGKSSL N L    V +   
Sbjct: 245 REKMAKMRREIAEMKTGREIKRQERKRHKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENA 304

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-- 307
           +  T    +       G L  ++DT G          E  + T  EV  +DLIL + +  
Sbjct: 305 LFATLDPTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGESDLILHVVDGS 364

Query: 308 -INSKKEISFPK---------NIDFIFIGTKSDLYSTYT-------EEYDHLISSFTGEG 350
             N +++++  +         ++  I +  K+DL    T       E+    +S+ TG  
Sbjct: 365 HPNPEEQLAAVREVVRDVGATDVPEIVVINKADLADPLTLQRLLRVEKRSIAVSARTGRN 424

Query: 351 LEELINKIKSILSNKFKKLPFSIPS 375
           +++L+  I + L     ++   +P 
Sbjct: 425 IDQLLALIDNELPRPSVEVEALVPY 449


>gi|293394830|ref|ZP_06639120.1| GTP-binding protein Era [Serratia odorifera DSM 4582]
 gi|291422581|gb|EFE95820.1| GTP-binding protein Era [Serratia odorifera DSM 4582]
          Length = 302

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E     +  E+   K        +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTNWTADDEMVVNKLRSLKCPVLLAINKVDNVA 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+  G  ++ +   ++ +L       P    + +  
Sbjct: 131 DKGKLLPHIAFLSQQMNFLDVVPISAEKGMNVDTIAGIVRKLLPEAEHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 191 RFMASEIIREKLMRFLGEE 209


>gi|311114410|ref|YP_003985631.1| GTP-binding protein HflX [Gardnerella vaginalis ATCC 14019]
 gi|310945904|gb|ADP38608.1| GTP-binding protein HflX [Gardnerella vaginalis ATCC 14019]
          Length = 489

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 96/244 (39%), Gaps = 27/244 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + N I  L++DI+      + K G   R     + ++G++NAGKSS+ N L   
Sbjct: 231 EMDRRAIRNRISKLRHDIALMAPTRETKRGSRRRQDIPTVAVVGYTNAGKSSIINRLTGS 290

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +   L  +G    + DT G          E  K T  EV NAD+I
Sbjct: 291 KELVENALFATLDTAVRKSLTKDGRAYTLVDTVGFVRRLPTQLVEAFKSTLEEVGNADVI 350

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSD---------LYSTYTEEYD 340
           L + + +                +I   ++I  I    KSD         L S Y +   
Sbjct: 351 LHVVDGSHPDPVSQIEAVNEVLAQIDGVEDIAQIIAFNKSDVMQEPMRLRLQSLYPDSLI 410

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
              S+ +G  ++ L  +I+++L +    +  ++P        LS+      + S   KD 
Sbjct: 411 V--SAASGTNIDRLRTRIENLLPSPHVHVKVTLPYSDYSGSLLSRVRENGIVKSAEYKDS 468

Query: 401 GLDI 404
           G+++
Sbjct: 469 GVEL 472


>gi|212212137|ref|YP_002303073.1| GTP-binding protein Era [Coxiella burnetii CbuG_Q212]
 gi|226741203|sp|B6IZ00|ERA_COXB2 RecName: Full=GTPase Era
 gi|212010547|gb|ACJ17928.1| GTP-binding protein era [Coxiella burnetii CbuG_Q212]
          Length = 295

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 68/187 (36%), Gaps = 21/187 (11%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETD 281
            I+G  N GKS+L N L  + ++I +  P TTR  +      +   V   DT G+   T+
Sbjct: 10  AIIGRPNVGKSTLLNQLLGQKISITSRKPQTTRYQILGVKTFKDIQVIYVDTPGLHASTE 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------DFIFIGTKSDLYSTY 335
             + +   +     + + D I+ + E + + + ++  +           +  K D     
Sbjct: 70  RTINRYMNRTARGALRDVDAIVFVIEPHWESQDAWVLDNLKEIETPVFLVINKVDKIKNR 129

Query: 336 TEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            E    +               S+ TG+ +  L   +  ++       P    + +   +
Sbjct: 130 AELLPLIEKVSSLYAFQKITPLSAKTGDQVGTLEQAVHQLMPESPFYFPPEQVTDRSDQF 189

Query: 382 HLSQTVR 388
             S+ +R
Sbjct: 190 MASEIIR 196


>gi|320161098|ref|YP_004174322.1| GTP-binding protein [Anaerolinea thermophila UNI-1]
 gi|319994951|dbj|BAJ63722.1| GTP-binding protein [Anaerolinea thermophila UNI-1]
          Length = 451

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 87/224 (38%), Gaps = 25/224 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +V     ++ +  +      + +H  + +          + ++G++NAGKS+L N LA  
Sbjct: 182 EVDRREIRKRIATLKAELEKVRAHRMRYRAQRQRSQIPVVALVGYTNAGKSTLLNRLANA 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V  V D    T D  T  ++L  G+L   +DT G  +          + T  E+  ADL
Sbjct: 242 EV-YVADQLFATLDPTTRRVELPGGHLALFTDTVGFIQKLPTQLVAAFRATLEEIAEADL 300

Query: 302 ILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLY--STYTEEYDHLI--- 343
           +L + +I                KEI    +I  I +  K D        EE        
Sbjct: 301 LLHVVDITHPNAFEQAQAVHATLKEIQ-ADHIPVITLLNKIDRLPDPKAAEEAIAYFSGS 359

Query: 344 ----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
               S+  G G+ E++  +   L   ++ +   IP  + +L  L
Sbjct: 360 VLAISALKGMGINEMLTLVNQELFETYQPVKVRIPYQEGNLISL 403


>gi|254392577|ref|ZP_05007754.1| GTP-binding protein Era [Streptomyces clavuligerus ATCC 27064]
 gi|294812543|ref|ZP_06771186.1| GTP-binding protein Era [Streptomyces clavuligerus ATCC 27064]
 gi|197706241|gb|EDY52053.1| GTP-binding protein Era [Streptomyces clavuligerus ATCC 27064]
 gi|294325142|gb|EFG06785.1| GTP-binding protein Era [Streptomyces clavuligerus ATCC 27064]
          Length = 317

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 10/129 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+    +G  NAGKS+L NAL  + VAI ++ P TTR  +   +      + + DT G
Sbjct: 17  RSGF-ACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEAQLILVDTPG 75

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++ +             D+I      + K         KE++  K    + I T
Sbjct: 76  LHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDRFIAKELAGIKKTPKVAIVT 135

Query: 328 KSDLYSTYT 336
           K+DL  + T
Sbjct: 136 KTDLVDSRT 144


>gi|157960866|ref|YP_001500900.1| GTP-binding protein Era [Shewanella pealeana ATCC 700345]
 gi|157845866|gb|ABV86365.1| GTP-binding protein Era [Shewanella pealeana ATCC 700345]
          Length = 330

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 25/206 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +          V   DT G+  E 
Sbjct: 39  VAIVGRPNVGKSTLLNKLLGQKISITSKKPQTTRHRIMGIHTDGPRQVVFIDTPGLHMEE 98

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK------NIDFIFIGTKSD- 330
              + +   +     +    L++ + +        E+   K          I    K D 
Sbjct: 99  KRAINRLMNRAAASSLAEVALVVFVVDGMNWTPDDEMVLRKLQSRDDGRKTILAINKVDN 158

Query: 331 -------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                        L   +  +    IS+  G  ++ +++   + +       P    + +
Sbjct: 159 IKDKEALFPHLEELSKKFPFDEILPISATQGTNVQRILDMSVASVPESPHYFPEDYVTDR 218

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLD 403
              +  S+ VR   M  L + +   D
Sbjct: 219 SQKFMASEIVREKLMRFLGD-ELPYD 243


>gi|269468621|gb|EEZ80265.1| GTPase [uncultured SUP05 cluster bacterium]
          Length = 294

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 23/205 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I ++G  N GKS+L N L  + ++I +  P TTR  +      + Y +   DT GI    
Sbjct: 8   IAVVGRPNVGKSTLINELIGQKLSITSHRPQTTRHRIHAIDTADNYQMVFVDTPGIHIGN 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEISFPKNIDFIFIG--TKSDLYS 333
              +     K     + + D+IL L E +       + +   + +D   I    K D   
Sbjct: 68  KKAINSYMNKAASSSIRDVDMILWLVESDKWTKEDSRVLEHIEQVDVPVILCINKIDKLR 127

Query: 334 TYTEEYD--------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           +  E                   +S+F     + L   I   L  +         + +  
Sbjct: 128 SAQEVLPFLEKIATKYQPTELFPLSAFKKRDTQALRELILKHLPEQEMIFDPDFITDRSE 187

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI 404
            + +++ +R   M  L E +   D+
Sbjct: 188 KFVVAEFIREKLMRHL-EDELPYDL 211


>gi|153809896|ref|ZP_01962564.1| hypothetical protein RUMOBE_00277 [Ruminococcus obeum ATCC 29174]
 gi|149834074|gb|EDM89154.1| hypothetical protein RUMOBE_00277 [Ruminococcus obeum ATCC 29174]
          Length = 418

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 111/296 (37%), Gaps = 28/296 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++ +E + ++ +  +    + L G   + L+ +   I       ++ +      +  ++ 
Sbjct: 118 ATTSEGKIQVELAQLRYRSARLVG-LRESLSRLGGGIGTRGPGEKKLETDRRLIRTRISA 176

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +      +  H  +   G+  R   K   I+G++NAGKS+L N L    + +  D    T
Sbjct: 177 LKAELAQVEKH-RELIRGKRSRGNLKTAAIVGYTNAGKSTLLNTLTGAGI-LAEDKLFAT 234

Query: 255 RDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D  T  L+L +G  + ++DT G          E  K T  E + AD I+ + + ++ + 
Sbjct: 235 LDPTTRVLELKDGQQILLTDTVGFIRKLPHHLVEAFKSTLEEAKYADYIIHVVDASNPQA 294

Query: 313 EISF-----------PKNIDFIFIGTKSDLY-----STYTEEYDHLISSFTGEGLEELIN 356
           E+                   I +  K D         +  +Y    S+ TGEGLEEL +
Sbjct: 295 ELQMHTVYETLRELGATGKKIITLLNKQDQVQGESLRDFRADYTVKCSARTGEGLEELKD 354

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQ------TVRYLEMASLNEKDCGLDIIA 406
            +  +L+     L       +     + +      +  Y E     +     +I A
Sbjct: 355 VLAKLLAESQIYLEELYTYKEAGKIQIIREYGSLLSEEYREDGIFVKARVPAEIFA 410


>gi|153855189|ref|ZP_01996373.1| hypothetical protein DORLON_02387 [Dorea longicatena DSM 13814]
 gi|149752358|gb|EDM62289.1| hypothetical protein DORLON_02387 [Dorea longicatena DSM 13814]
          Length = 422

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 83/230 (36%), Gaps = 20/230 (8%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           K  +  +     D+  H    +      +     I+G++NAGKS+L N L    +    D
Sbjct: 169 KSRIAQLNRELKDVKKHREVTREQRSRSHIPVAAIVGYTNAGKSTLLNTLTGAGI-FAED 227

Query: 250 IPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D  T DL L  G  + ++DT G          E  + T  E   AD+IL + + 
Sbjct: 228 KLFATLDPTTRDLKLPSGQEILMTDTVGFIRKLPHHLIEAFRSTLEEARYADIILHVVDA 287

Query: 309 NSKKEISFP------------KNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEG 350
           ++ +                 K+   I +  K D         D        IS+ TGEG
Sbjct: 288 SNPQMDEQMHTVYETLQNLGVKDKPVITVFNKIDRMEDIWVPRDLHADYYVKISARTGEG 347

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
           + E +  ++++L  +  ++    P  +     L +    L+     E   
Sbjct: 348 ITEFLQSVEAVLREQKVEIEALYPYKEAGKIQLIRKYGELQEEEYREDGI 397


>gi|329912353|ref|ZP_08275734.1| GTP-binding protein Era [Oxalobacteraceae bacterium IMCC9480]
 gi|327545640|gb|EGF30798.1| GTP-binding protein Era [Oxalobacteraceae bacterium IMCC9480]
          Length = 300

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL    V+I +    TTR  +T    +E       DT G +   
Sbjct: 15  IAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQTVEDTQFIYVDTPGFQTKH 74

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSD 330
                + + +T    + +AD+IL L E       + +     P  +  I +  KSD
Sbjct: 75  ANALNKTLNKTVANTLTSADVILFLIEAGTFGPADQQVLDLIPDTVPCILVINKSD 130


>gi|307330989|ref|ZP_07610120.1| GTP-binding protein Era [Streptomyces violaceusniger Tu 4113]
 gi|306883375|gb|EFN14430.1| GTP-binding protein Era [Streptomyces violaceusniger Tu 4113]
          Length = 352

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+    +G  NAGKS+L NAL    VAI ++ P TTR  +   +      + + DT G
Sbjct: 52  RSGF-ACFVGRPNAGKSTLTNALVGTKVAITSNRPQTTRHTVRGIVHRPDAQLVLVDTPG 110

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++ +             D+I      + K          E++  K    I I T
Sbjct: 111 LHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDRYIATELAGIKKTPKIAIVT 170

Query: 328 KSDLYST 334
           K+DL  +
Sbjct: 171 KTDLVES 177


>gi|296171792|ref|ZP_06852920.1| GTP-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295893963|gb|EFG73730.1| GTP-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 484

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 91/275 (33%), Gaps = 27/275 (9%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q    +  + G   S+  Q   +       +        + +      +E ++ +  
Sbjct: 176 SLAQMEYMLPRLRGWGESMSRQAGGRAGGSGGGVGLRGPGETKIETDRRRIRERMSKLRR 235

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTT 254
              D+       +   +  +   I I+G++NAGKSSL NAL    V    A+   +  TT
Sbjct: 236 EIKDMKQVRDTQRSRRLASDAPSIAIVGYTNAGKSSLLNALTGAGVLVQDALFATLEPTT 295

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           R               I+DT G          E  + T  EV +ADL+L + + +    +
Sbjct: 296 RRAEFGADSKRAGAYTITDTVGFVRHLPTQLVEAFRSTLEEVVDADLLLHVVDGSDANPL 355

Query: 315 SFPKN----------------IDFIFIGTKSDLYSTYTEEY-------DHLISSFTGEGL 351
           +                       + +  K D  S  T             +S+ TG+G+
Sbjct: 356 AQINAVRAVVSDVVADHHGDPPPELLVVNKIDAASDLTLAKLRHALPGAVFVSARTGDGI 415

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           + L  ++  +       +   IP H+  L      
Sbjct: 416 DALRTRMAELAVPADTAVDVVIPYHRGDLVARLHA 450


>gi|160944574|ref|ZP_02091802.1| hypothetical protein FAEPRAM212_02088 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444356|gb|EDP21360.1| hypothetical protein FAEPRAM212_02088 [Faecalibacterium prausnitzii
           M21/2]
          Length = 421

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 17/226 (7%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             ++     + +          + ++G++N GKSSL NAL    VA   D+   T D  +
Sbjct: 189 LAEMEKRRGESRKARAKTGMPVVSLVGYTNVGKSSLMNALCGPSVAE-ADMLFATLDPTS 247

Query: 260 IDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
             L L  G  V + DT G          E  K T  E   +D+I+ + +   ++      
Sbjct: 248 RKLVLPSGMAVLLVDTVGFVSRLPHNLVEAFKSTLEEAAWSDVIVRVADAGDEQREEQLA 307

Query: 319 ------------NIDFIFIGTKSDLYSTYTEEYDH-LISSFTGEGLEELINKIKSILSNK 365
                       +I  + +  K D  +T + + D  L S+ TG GL++L+ K+  +LS++
Sbjct: 308 VTDEVLDGLDCTDIPRLTVYNKCDKPNTLSFDPDILLTSAKTGYGLDKLLQKLDEVLSDR 367

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD-II-AENL 409
              +   +P  K  L    +    +++    E    L+ I+  E+L
Sbjct: 368 VHTIRVLLPYDKLGLAAPMRERGSVQVEEYREDGLYLEGIVKTEDL 413


>gi|325282722|ref|YP_004255263.1| GTP-binding protein Era-like-protein [Deinococcus proteolyticus
           MRP]
 gi|324314531|gb|ADY25646.1| GTP-binding protein Era-like-protein [Deinococcus proteolyticus
           MRP]
          Length = 306

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 25/181 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  N GKS+L NA     VA  +  P TTR  +        + V   DT G
Sbjct: 13  RAGF-VAIVGKPNVGKSTLLNAFLNTKVAPTSHRPQTTRRGVRGIFSDGTHQVVFVDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNIDFIFIG 326
           + +  D + K         + + D ++ + ++           +++    PK      +G
Sbjct: 72  VHKPKDALGKYMNNEVSTALSDIDAMIWVVDLRHPPTDEDRLVARQIRDLPK--PLFLVG 129

Query: 327 TKSD----------LYSTYTE--EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            K D          LY    E  E D  ++S + +  +  +  +++ + +   + PF  P
Sbjct: 130 NKQDAAKYPEEAIGLYEALLEGREADTTVTSLSAQKNDAKVTALRAQILDVLPENPFFFP 189

Query: 375 S 375
            
Sbjct: 190 Q 190


>gi|302551316|ref|ZP_07303658.1| GTP-binding protein Era [Streptomyces viridochromogenes DSM 40736]
 gi|302468934|gb|EFL32027.1| GTP-binding protein Era [Streptomyces viridochromogenes DSM 40736]
          Length = 320

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 9/135 (6%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           S  + GE +        +G  NAGKS+L NAL  + VAI  + P TTR  +   +     
Sbjct: 10  SSEESGETVHRAGFACFVGRPNAGKSTLTNALVGQKVAITANQPQTTRHTVRGIVHRPDA 69

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPK 318
            + + DT G+ +   ++ +             D+I      N K         KE++  K
Sbjct: 70  QLILVDTPGLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPANEKLGPGDRFIAKELASIK 129

Query: 319 NIDFIFIGTKSDLYS 333
               I I TK+DL  
Sbjct: 130 KTPKIAIVTKTDLVD 144


>gi|229588076|ref|YP_002870195.1| GTP-binding protein HflX [Pseudomonas fluorescens SBW25]
 gi|229359942|emb|CAY46796.1| GTP-binding protein HflX [Pseudomonas fluorescens SBW25]
          Length = 433

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 103/297 (34%), Gaps = 27/297 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L      I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLDHMSTRLVRGWTH-LERQGGGIGMRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN + K DV    D    T
Sbjct: 174 QIKGRLEKVRSQREQSRRGRSRADIPTVSLVGYTNAGKSTLFNNVTKSDV-YAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     LDL+    + ++DT G          E  + T  E  N+DL+L + +      
Sbjct: 233 LDPTLRRLDLDDLGPIVLADTVGFIRHLPHKLVEAFRSTLEESSNSDLLLHVIDAAEPDR 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +               +++  + +  K DL      +             +S+  G GLE
Sbjct: 293 MLQIEQVMLVLGEIGAQDLPILEVYNKLDLLEGVEPQIQRDENGKPQRVWLSARDGSGLE 352

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            L   I  +L         ++   +R     +Q      +      + G+ ++A  L
Sbjct: 353 LLEQAIAELLGGDL--FVGTLRLPQRFARLRAQFFELGAVQKEEHDEEGVSLLAVRL 407


>gi|297588412|ref|ZP_06947055.1| GTP-binding protein Era [Finegoldia magna ATCC 53516]
 gi|297573785|gb|EFH92506.1| GTP-binding protein Era [Finegoldia magna ATCC 53516]
          Length = 294

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 80/199 (40%), Gaps = 23/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G SN GKS+L N +  + + I++D P TTR+ + +    E       DT GI+   
Sbjct: 7   ISVIGRSNVGKSTLLNRVLGEKLTIISDKPQTTRNKIQLIYTDENMQAIFLDTPGIQTPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPK--NIDFIFIGTKSD--- 330
           + +    +K +   +   D+I  + +   +      + I   K  +   I +  K D   
Sbjct: 67  NKLGDYMLKVSMSTLNEVDVITYIVDTTEEIGKLDTEIIEKLKLVDTKIILLINKIDKTS 126

Query: 331 ------LYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 L   Y++    E    IS+  G+ +E  +  +K+ L            + +   
Sbjct: 127 SDKVNELVEMYSKVGIFEEIIPISALNGDNVEGYLTSLKNNLPEGPMYYDEDSVTDQPIR 186

Query: 381 YHLSQTVRYLEMASLNEKD 399
             + + +R  E A +N  D
Sbjct: 187 QIVQELIR--EKALMNLSD 203


>gi|13358054|ref|NP_078328.1| GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|6899489|gb|AAF30903.1|AE002147_4 GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970]
          Length = 304

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 23/175 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E+I+    + I+G  N GKS+L NA+ KK V+I+++ P TTR+ +    + +   +  +D
Sbjct: 4   EMIKKYGIVAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTD 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLK------EINSKKEISFPK---NIDFIF 324
           T G  E  + ++        +  + A++IL +       + N  + I+  K     + I 
Sbjct: 64  TPGFHEPSNKLDLFLNHEIEISYKEANVILFVTTMDKELDANDFEIINLIKEANKENIIL 123

Query: 325 IGTKSD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           + +K++              L      +    IS+     +++LIN IK+ L   
Sbjct: 124 VISKAEMAKNQDQIDERIHFLKKHIAFKDVVQISALHVINIDKLINTIKNYLHKD 178


>gi|298713744|emb|CBJ33718.1| PHflX, plastid HflX GTPase [Ectocarpus siliculosus]
          Length = 823

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 96/256 (37%), Gaps = 37/256 (14%)

Query: 186 NFSSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
               + + + I+ LK ++S    H    + G        + ++G++NAGKS+L N L + 
Sbjct: 510 EVDRRLLKDKIIALKKELSGVRRHRDFQRRGRKKLGLPVVALVGYTNAGKSTLLNTLTRA 569

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVK----ISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            V    ++   T D  T  + L G  V     ++DT G  +          + T  EV  
Sbjct: 570 GVM-AENMLFATLDPTTRKVKLSGLKVHPEVMLTDTVGFIQKLPTNLVAAFRATLEEVVE 628

Query: 299 ADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLY-----------STY 335
           AD+I+ + +++S                    +   + +  K DL            +  
Sbjct: 629 ADVIVHIVDVSSPSREKQESAVTGVLGEMKTSDKPRLTMWNKLDLLPEEEQEQVRVDAEE 688

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH------LSQTVRY 389
            +E     S+ TGEGL++ +  ++  +     K+   +P  +  L           T  Y
Sbjct: 689 RDELTVAASAMTGEGLDDFVTCLEEAICALLFKVEAVVPYSRGDLLSRVHELGACDTEEY 748

Query: 390 LEMASLNEKDCGLDII 405
            +  +L +     +++
Sbjct: 749 TDAGTLIQARVPAELL 764


>gi|291547170|emb|CBL20278.1| GTP-binding protein HflX [Ruminococcus sp. SR1/5]
          Length = 411

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 101/286 (35%), Gaps = 22/286 (7%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           ++SE ++Q  L+                  L+ +   I       ++ +      +  ++
Sbjct: 117 VTSEGKIQVELAQLRYRSA---RLVGLRSSLSRLGGGIGTRGPGEKKLETDRRLIRNRIS 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +    + +  H    +    + N     I+G++NAGKS+L N L    V +  D    T
Sbjct: 174 ALKQELSQVEKHRELIRSRRAVGNLKTAAIVGYTNAGKSTLLNTLTGASV-LSEDKLFAT 232

Query: 255 RDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D  T  L L +G  + ++DT G          E  K T  E + AD I+ + + ++ + 
Sbjct: 233 LDPTTRLLTLDDGQQLLLTDTVGFIRKLPHNLVEAFKSTLEEAKYADYIIHVVDASNPQA 292

Query: 313 EISF-----------PKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFTGEGLEELIN 356
           EI                   I +  K D  S         ++   IS+ TGEGLEE   
Sbjct: 293 EIQMHIVYETLKELGALGKKTITLFNKQDRVSGESFRDLRADHTLKISARTGEGLEEFKQ 352

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
            +  IL+     +    P  +     L +    L      E    +
Sbjct: 353 LLSEILAEGQIYMERLFPYSEAGQIQLIREYGQLLSEEYTEGGIAV 398


>gi|296136815|ref|YP_003644057.1| GTP-binding protein Era [Thiomonas intermedia K12]
 gi|295796937|gb|ADG31727.1| GTP-binding protein Era [Thiomonas intermedia K12]
          Length = 301

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 7/116 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NAL    V+I +    TTR  +              DT G +   
Sbjct: 15  VAIVGRPNVGKSTLLNALVGAKVSITSHKAQTTRHRILGVTTHGASQFAFVDTPGFQTQH 74

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSD 330
                  + RT    +   DL+L + E       +       P +   I +  K D
Sbjct: 75  MHALNRAMNRTVTGALSEVDLVLWVLEAGKILPQDRTVLEVLPDDRPVIAVVNKLD 130


>gi|256821744|ref|YP_003145707.1| GTP-binding proten HflX [Kangiella koreensis DSM 16069]
 gi|256795283|gb|ACV25939.1| GTP-binding proten HflX [Kangiella koreensis DSM 16069]
          Length = 433

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 98/285 (34%), Gaps = 26/285 (9%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W   L   +  I        + +      +E L  I      +S  
Sbjct: 130 LAQLRHLSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRERLKYIDKRLEKVSKQ 188

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE- 265
             QG+      N   + I+G++NAGKS+LFN L    V +  D    T D     + L  
Sbjct: 189 REQGRRSRKRANIKTVSIVGYTNAGKSTLFNYLTTAGV-LAEDKLFATLDPTLRRISLPQ 247

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN------ 319
           G  V I+DT G             + T  E   AD++L + +  S +     +       
Sbjct: 248 GTDVIIADTVGFIRHLPHELVAAFRATLEESVEADVLLHVIDAASDRRDENMEQVEEVLT 307

Query: 320 ------IDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSN 364
                 I  + I  K DL        D           IS    +G+E L   I+ +   
Sbjct: 308 EIGAETIPRLEIYNKIDLIEGAEPHIDRDDKGRPIRVWISVIKEQGIELLREAIEELAQE 367

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           +       IP  +  L  L   ++ +E  + N  D G  ++  +L
Sbjct: 368 EQFNAELRIPPQQGRLRGLLYELQAVE--AENAGDNGDILLTVSL 410


>gi|223040645|ref|ZP_03610915.1| GTP-binding protein Era [Campylobacter rectus RM3267]
 gi|222878103|gb|EEF13214.1| GTP-binding protein Era [Campylobacter rectus RM3267]
          Length = 293

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 79/187 (42%), Gaps = 22/187 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKSSL N L    + IV+     TR  ++  +      +  +DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSSLLNCLLGAKITIVSHKQNATRRKISGIVMNGEDQIVFTDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSD 330
           G+ E++  + K  I      + + D I+ L  I+   +     ++       I + TK D
Sbjct: 60  GLHESNKTLNKLMISEAIKSMGDCDAIVFLAPIHDDVDDYIKFLNLNPQKPHILVLTKVD 119

Query: 331 LYST---------YTEEYDHL-----ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIP 374
             S          Y +  D        S+      + L+++I  +L     F    F  P
Sbjct: 120 EVSNAKVLEKIARYQKFQDKFAALLPFSAKKQTYKKPLLDEICKLLPEHEHFYDPEFLTP 179

Query: 375 SHKRHLY 381
           ++++ ++
Sbjct: 180 TNEKEIF 186


>gi|319405766|emb|CBI79389.1| GTP-binding protein HflX [Bartonella sp. AR 15-3]
          Length = 444

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 29/221 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + N I+ ++ ++ + +    L    R       I ++G++NAGKS+LFN L+  
Sbjct: 182 EADRRLLQNKIISIRRELETVVKTRALHRAKRKKIPHPVIALVGYTNAGKSTLFNRLSNS 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V     +  T    L   +   G  V +SDT G             + T  EV  ADLI
Sbjct: 242 NVLAKNMLFATLDPTLRKIVLPHGQTVLLSDTVGFISNLPTHLIAAFRATLEEVIEADLI 301

Query: 303 LLLKEINSKK---------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------- 339
           L +++ +                   I        + I  K D+   +            
Sbjct: 302 LHVRDASDPDHHAHAQDVVEILSSLGIDINNIDHIVEIWNKIDMLDQHALGVLQTNSKKM 361

Query: 340 ---DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                ++S+ TG+G+++L+  I+  +    + +   +  ++
Sbjct: 362 LNSVLMMSALTGKGVDQLLALIEKKIFGDIQSVELILKPNE 402


>gi|302386875|ref|YP_003822697.1| GTP-binding proten HflX [Clostridium saccharolyticum WM1]
 gi|302197503|gb|ADL05074.1| GTP-binding proten HflX [Clostridium saccharolyticum WM1]
          Length = 423

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 100/273 (36%), Gaps = 30/273 (10%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
               L+ +   I       ++ ++      + +  +     D+  H    +      +  
Sbjct: 143 LRSSLSRLGGGIGTRGPGEKKLEMDRRLIHDRIGMLKAELEDVKRHREVVRQQRDKNHVP 202

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
              I+G++NAGKS+L N L    + +  D    T D  T +L L  G  + ++DT G   
Sbjct: 203 AAAIVGYTNAGKSTLLNRLTDAGI-LAEDKLFATLDPTTRNLSLPGGQQILLTDTVGFIR 261

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------EISFPKNIDFIFIG 326
                  E  K T  E + +D+IL + + ++ +             E+     I    + 
Sbjct: 262 KLPHHLIEAFKSTLEEAKYSDIILHVVDCSNPQMDMQMYVVYETLRELGICDKIMIT-VF 320

Query: 327 TKSD------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK-------FKKLPFSI 373
            K D      +    + ++   IS+ TGEGL+ELIN +++IL N+       +       
Sbjct: 321 NKIDAADAGVILRDVSSDHQVRISAKTGEGLDELINLLETILRNQKVYLERIYSYKEAGK 380

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
               R    L +   Y E           ++ A
Sbjct: 381 IQLIRKYGQLLK-EEYQEDGIFVNAYVPSELFA 412


>gi|297626487|ref|YP_003688250.1| FeoB, Ferrous iron transport protein B [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922252|emb|CBL56824.1| FeoB, Ferrous iron transport protein B [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 473

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 97/275 (35%), Gaps = 34/275 (12%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR----SFIEADLDFSEEEDVQNFSSKE 191
            +++   +          +      W + L+       +           E       + 
Sbjct: 163 HAKSTEGKTQVELAQLNYMKQRLRGWGESLSRQVGGRAASGVGIGGRGPGETKLETDRRR 222

Query: 192 VLNDILFLKNDISSHISQG--KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK----DV 244
           +   I  L+  + +  +    +  E +R+    + ++G++NAGKSSL N L       + 
Sbjct: 223 INTRIATLRKKLRAMDASRALQREERVRHRIPSVALVGYTNAGKSSLLNRLTGAGVLVED 282

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           A+   +  TTR   T     +G +  ++DT G             + T  E   ADL+L 
Sbjct: 283 ALFATLDPTTRRCRTT----DGRVYTLTDTVGFVRHLPTDLVAAFRSTLEESVRADLLLH 338

Query: 305 LKEINSKK---EISF---------PKNIDFIFIGTKSDLYSTYT-EEYDHLI------SS 345
           + + +      +I+                  +  K DL S+ +  E  H        S+
Sbjct: 339 VVDGSDPDPEGQITAVHEVLRDIGAGERPEQIVVNKVDLASSQSLLELRHNHPDAVFVSA 398

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            TGEGLEEL  + +S L      +   +P  +  L
Sbjct: 399 VTGEGLEELRTRTESRLPTPQTSVDVVVPWDRGDL 433


>gi|291543062|emb|CBL16172.1| GTP-binding protein HflX [Ruminococcus bromii L2-63]
          Length = 416

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 104/281 (37%), Gaps = 30/281 (10%)

Query: 126 LEAESLADLISSETEMQRRLSM--EGMSGELSSLYGQWIDKLTHIRSFIEA-------DL 176
           +EAE+   +I   T +    +       G+L     Q    L  +     A         
Sbjct: 94  IEAETDVRVIDRTTLILDIFAQIARSKEGKLQVELAQLKYMLPRLTGKGIAMSRLGGGIG 153

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK--LGEIIRNG-YKIVILGHSNAGKS 233
                E       + +   I  LK ++S      +       ++G     I+G++NAGKS
Sbjct: 154 TRGPGETKLETDRRHIRRRIESLKEELSDLEKHRQMLRSRRKKDGVITCAIVGYTNAGKS 213

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRT 292
           +L N L    V +  D    T D  +  L L  G  V + DT G+         E  + T
Sbjct: 214 TLMNCLTDAGV-LAQDKLFATLDPTSRALKLPSGVTVMMIDTVGLVRRLPHHLVEAFRST 272

Query: 293 FLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYD 340
             E   +D+IL + + +S +  +  +            +   I +  K DL        D
Sbjct: 273 LEEAAQSDIILNVCDASSDEARTHMQVTTDLLESLGCGDTPIITVLNKCDLLDETMLAQD 332

Query: 341 H----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                 IS+  G G++EL+N I++ L  + K++   +P  +
Sbjct: 333 FKACVRISAKNGTGIDELLNAIENNLPVRMKRVKILLPFAQ 373


>gi|153009537|ref|YP_001370752.1| GTP-binding protein HSR1-like [Ochrobactrum anthropi ATCC 49188]
 gi|151561425|gb|ABS14923.1| GTP-binding protein HSR1-related [Ochrobactrum anthropi ATCC 49188]
          Length = 472

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 104/278 (37%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + + +
Sbjct: 148 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQD 204

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +   +V +  D+ 
Sbjct: 205 KILKIKRELETVVRTRTLHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAEV-LAEDML 263

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 264 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 323

Query: 311 KKEISFPKN---------------IDFIFIGTKSDLYSTYT-------------EEYDHL 342
               +  ++                  + I  K D                   E     
Sbjct: 324 PDNAAQAEDVESILSGLGIEPQDRKRVVEIWNKIDNLDESGREAALRLAAAGSEEGRPIP 383

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +   + HL
Sbjct: 384 LSAITGEGVDRLLSLIETRIAGSLGPVDVVLSPFELHL 421


>gi|326441004|ref|ZP_08215738.1| GTPase Era [Streptomyces clavuligerus ATCC 27064]
          Length = 314

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 10/129 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+    +G  NAGKS+L NAL  + VAI ++ P TTR  +   +      + + DT G
Sbjct: 14  RSGF-ACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEAQLILVDTPG 72

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++ +             D+I      + K         KE++  K    + I T
Sbjct: 73  LHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDRFIAKELAGIKKTPKVAIVT 132

Query: 328 KSDLYSTYT 336
           K+DL  + T
Sbjct: 133 KTDLVDSRT 141


>gi|329850675|ref|ZP_08265520.1| GTP-binding protein HflX [Asticcacaulis biprosthecum C19]
 gi|328840990|gb|EGF90561.1| GTP-binding protein HflX [Asticcacaulis biprosthecum C19]
          Length = 441

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 32/228 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + I  LK ++        L  + R       + ++G++NAGKS+LFN L + 
Sbjct: 174 ELDRRMIADKIKQLKTELDEVRRTRALHRVQRKKVPYPIVALVGYTNAGKSTLFNHLTRA 233

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V +  D+   T D     L L  G    +SDT G             + T  EVE ADL
Sbjct: 234 EV-VAKDLLFATLDTTLRTLKLPNGRSAMLSDTVGFISDLPHELVAAFRATLEEVEQADL 292

Query: 302 ILLLKEINSKKEISFPKNI--------------DFIFIGTKSDLYSTYTEEY-------- 339
           IL ++++++ +  +  +++                  +  K DL    ++E         
Sbjct: 293 ILHVRDVSNPETEAQRQDVEQVLQHILPDLDRGRMFEVWNKIDLLDPDSKEVLYARSVTS 352

Query: 340 -----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                   +S+ TGEG+E L+ ++ +++    +++   +  H+     
Sbjct: 353 RDAQKPLPVSAVTGEGIEALLARVANLVDADGEEIDLVLEPHQGDALA 400


>gi|154148623|ref|YP_001406618.1| GTP-binding protein Era [Campylobacter hominis ATCC BAA-381]
 gi|189037255|sp|A7I277|ERA_CAMHC RecName: Full=GTPase Era
 gi|153804632|gb|ABS51639.1| GTP-binding protein Era [Campylobacter hominis ATCC BAA-381]
          Length = 289

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 6/120 (5%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + ++G +NAGKSSL N L  + +A+V+     TR  +          +   DT 
Sbjct: 1   MKSGF-VSLIGRTNAGKSSLLNFLVGERLAMVSHKINATRRKINGIAMFGEDQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNIDFIFIGTKSD 330
           G+ +++ I+ K  I      + +ADL+L L  I     + ++ +   K    I I TK+D
Sbjct: 60  GLHKSEKIMNKLMIDVAIKSIGDADLVLFLASIHDDTRDYEEFLKIAKRPPHILILTKTD 119


>gi|323144163|ref|ZP_08078799.1| ribosome biogenesis GTPase Era [Succinatimonas hippei YIT 12066]
 gi|322416071|gb|EFY06769.1| ribosome biogenesis GTPase Era [Succinatimonas hippei YIT 12066]
          Length = 301

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + ++G  N GKS+L N L  + V+I +  P TTR+ +        Y     DT G+ +E 
Sbjct: 10  VALIGRPNVGKSTLMNHLIGQKVSITSRRPQTTRNRVLGIDTQGEYQAVFVDTPGLHKEE 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     + + +LILL+ +        E+ F K     +  + +  K D   
Sbjct: 70  KRAINRLMNRAAESALGDVELILLVVDATLWTDDDEMVFSKIENTKVPVVLVINKIDKLH 129

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L    + +    +S+     L++L   +   L            + +  
Sbjct: 130 DKATLLPLIERLSKRVSFKAIVPVSALRSTNLDDLKKLVFESLPEGPHCFSEDSITDRSS 189

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 190 RFMAAELIR 198


>gi|323704137|ref|ZP_08115716.1| GTP-binding proten HflX [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536203|gb|EGB25975.1| GTP-binding proten HflX [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 412

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 87/254 (34%), Gaps = 17/254 (6%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           S+E  +Q  L+                + L+ +   I        + +      KE +  
Sbjct: 117 SAEGMLQVELAQLKYR---LPRLQGIGNDLSRLGGGIGTRGPGETKLETDRRHIKERIRA 173

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I    +D+  H    +          + I+G++NAGKS+L N L    V     +  T  
Sbjct: 174 IEAKIDDLRRHRELLRGRRKKNEVPVVAIIGYTNAGKSTLMNVLTNASVYAEDKLFATLD 233

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
                 +   G  + + DT G          E  K T  E++ AD++L + +I++K  + 
Sbjct: 234 PTARKLILPSGREIVLIDTVGFIRKLPHDLVEAFKSTLEELKYADVLLHVIDISAKDVMH 293

Query: 316 FPK------------NIDFIFIGTKSDLYSTYTEEYD--HLISSFTGEGLEELINKIKSI 361
                          N   I +  KSDL     E       IS+    G+++L+  I   
Sbjct: 294 KINVVEGVLKDLDVINKPKINVYNKSDLLDKVPENKGDSVYISAKERIGIDKLLEMIDRF 353

Query: 362 LSNKFKKLPFSIPS 375
             +    L F    
Sbjct: 354 AYSDLSILDFYFSY 367


>gi|167949047|ref|ZP_02536121.1| hypothetical protein Epers_22046 [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 53

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 3  HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG 55
            ++TI AV+T      + I+R+SG  C +V E +   K P PR AS R F  
Sbjct: 2  QPRDTIAAVATPPGSGGVGIVRVSGADCKRVAEALAG-KLPQPRLASYRPFHD 53


>gi|289193010|ref|YP_003458951.1| ferrous iron transport protein B [Methanocaldococcus sp. FS406-22]
 gi|288939460|gb|ADC70215.1| ferrous iron transport protein B [Methanocaldococcus sp. FS406-22]
          Length = 668

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 19/164 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS++FNAL  ++V I  +  G T +    + +  G   K+ D  G+  
Sbjct: 4   YEIALIGNPNVGKSTIFNALTGENVYI-GNWAGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                  E I R ++  E  DL++ + +  + +              + +    K DL  
Sbjct: 63  LTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAK 122

Query: 334 TYTEEYDHLI------------SSFTGEGLEELINKIKSILSNK 365
           +   E D               S+    G+E+L   I + + +K
Sbjct: 123 SLGIEIDVDKLEKILGVKVVPLSAVKKIGIEDLKKAISTAVKDK 166


>gi|229008338|ref|ZP_04165815.1| hypothetical protein bmyco0002_51470 [Bacillus mycoides Rock1-4]
 gi|228752906|gb|EEM02458.1| hypothetical protein bmyco0002_51470 [Bacillus mycoides Rock1-4]
          Length = 425

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 111/318 (34%), Gaps = 35/318 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKLTHIRSFI 172
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q    +  +    
Sbjct: 80  NNELTPSQIRNLSAMLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 173 EA-------DLDFSEEEDVQNFSSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKI 222
            A              E       + + + I  +K  ++    H  + +        +++
Sbjct: 140 LALSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAIVVEHRKRYRERRKDNQVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMQLPCGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   +            +I  + +  K 
Sbjct: 259 PTSLVAAFRSTLEEAREADVILHVVDSADPNYVGHEQTVKKLLQDLEIDHIPIVTVYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           D     +  + +    + S+F    L  L   +++ +  + +     IP  +  L  L +
Sbjct: 319 DRLHQNFIPFPKNDFLMTSAFEETDLLSLKESVETKMMEEMESYKVMIPPSEGRLLTLLK 378

Query: 386 TVRYLEMASLNEKDCGLD 403
           T   L      E     +
Sbjct: 379 TETVLTGVEFKEDGFLYE 396


>gi|115524769|ref|YP_781680.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris
           BisA53]
 gi|115518716|gb|ABJ06700.1| GTP-binding protein, HSR1-related protein [Rhodopseudomonas
           palustris BisA53]
          Length = 455

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 97/267 (36%), Gaps = 29/267 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E   ++ +  ++ + S L   W         F         + +       + + 
Sbjct: 137 RAKTREGALQVELAHLNYQRSRLVRSWTHLERQRGGFGFLGGPGETQIEADRRLIGDRIT 196

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S     + G        + ++G++NAGKS+LFN L + +V     +  T 
Sbjct: 197 KIESELKKVQSTRRLHRAGRQRVPYRVVALVGYTNAGKSTLFNRLTRAEVQAADMLFATL 256

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-- 312
              L   +   G    +SDT G             + T  EV  ADLIL +++I+ +   
Sbjct: 257 DPTLRALVLPHGGKAMLSDTVGFISNLPTQLVAAFRATLEEVLEADLILHVRDISHEDAD 316

Query: 313 -------------EISFPKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSF 346
                         I+       I +  K D +S   +E               HL+S+ 
Sbjct: 317 AQQDDVDAVLRQLGIAPGTGSPIIEVWNKIDRFSPEQQEELQNIAARRDSEHPCHLVSAV 376

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSI 373
           TG+GL+ L+  I+  L+     L  ++
Sbjct: 377 TGQGLDALLQAIEDRLAETRTTLDLTV 403


>gi|270265299|ref|ZP_06193560.1| GTP-binding protein [Serratia odorifera 4Rx13]
 gi|270040703|gb|EFA13806.1| GTP-binding protein [Serratia odorifera 4Rx13]
          Length = 302

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTDGAYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E     +  E+   K        +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTNWTADDEMVVNKLRSLKCPVLLAINKVDNVT 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             ++   H               IS+  G  ++ +    + +L       P    + +  
Sbjct: 131 DKSKLLPHIAFLSQQMNFLDVVPISAEKGMNVDTIAAIARKLLPEAEHHFPDDYITDRSQ 190

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 191 RFMASEIIREKLMRFLGEE 209


>gi|225017068|ref|ZP_03706260.1| hypothetical protein CLOSTMETH_00993 [Clostridium methylpentosum
           DSM 5476]
 gi|224950235|gb|EEG31444.1| hypothetical protein CLOSTMETH_00993 [Clostridium methylpentosum
           DSM 5476]
          Length = 439

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 99/254 (38%), Gaps = 27/254 (10%)

Query: 148 EGMSGELSSLYGQWIDKL-------THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
               G++     Q   +L         +             E       + +   I  L+
Sbjct: 139 RSREGQIQVELAQQRYRLPRLAGMGVELSRLGGGIGTRGPGETKLETDKRHIRRRIASLE 198

Query: 201 NDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            ++S    + ++    R   N   + I+G++NAGKS+L NAL    V +  +    T D 
Sbjct: 199 QELSQLEKRREMMRTRRKKDNVTSVAIVGYTNAGKSTLLNALTDAGV-LAENKLFATLDP 257

Query: 258 LTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
               L+L +G  V + DT G+         E  K T  E  NADLIL + ++++ +  S 
Sbjct: 258 TARALELPDGKSVLLIDTVGLISRLPHHLVEAFKSTLEEAANADLILHVCDVSNDEVESQ 317

Query: 317 PK------------NIDFIFIGTKSDLYST---YTEEYDHLISSFTGEGLEELINKIKSI 361
            K            +I  + +  K D        +E    +IS+ TG G + L++KI S 
Sbjct: 318 VKVVHQLLGELGCGSIPVLTVLNKCDKIPFQPYLSEPDSVMISAKTGFGFDNLLHKIASS 377

Query: 362 LSNKFKKLPFSIPS 375
           L    +++   IP 
Sbjct: 378 LEQTSRRMKLLIPY 391


>gi|305681126|ref|ZP_07403933.1| GTP-binding protein HflX [Corynebacterium matruchotii ATCC 14266]
 gi|305659331|gb|EFM48831.1| GTP-binding protein HflX [Corynebacterium matruchotii ATCC 14266]
          Length = 559

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 89/219 (40%), Gaps = 28/219 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + + +D+  L+ +I+   +  ++    R      +I I G++NAGKSSL NA+   
Sbjct: 294 EADRRRLRSDMAKLRKEIAGMQTAREIKRSRRRASTIPQIAIAGYTNAGKSSLINAITGA 353

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +V D    T D  T   +L +G  V  +DT G          E  + T  EV  ADL
Sbjct: 354 GV-LVEDALFATLDPTTRRAELADGRTVVFTDTVGFVRHLPTQLVEAFRSTLEEVVGADL 412

Query: 302 ILLLKEINSK---KEISFPKN-------------IDFIFIGTKSDLYS-------TYTEE 338
           +L + + +     K+I+                    I +  K D           +  +
Sbjct: 413 VLHVVDGSDPFPLKQIAAVNKVIGEIVQEYGETAPPEIIVVNKIDAADPLVLVELRHAVD 472

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
               +S+ TGEG+ EL  +I+  L++    +   +P  +
Sbjct: 473 DVVFVSAHTGEGISELEARIELFLNSLDSHVELLVPFTR 511


>gi|88658308|ref|YP_507292.1| GTP-binding protein Era [Ehrlichia chaffeensis str. Arkansas]
 gi|123493487|sp|Q2GGZ1|ERA_EHRCR RecName: Full=GTPase Era
 gi|88599765|gb|ABD45234.1| GTP-binding protein Era [Ehrlichia chaffeensis str. Arkansas]
          Length = 296

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 22/211 (10%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G +NAGKS+L N L  + VA VT    TTR  +   L+ E   +   DT GI     
Sbjct: 12  AIVGTTNAGKSTLINMLVGQKVAAVTPKVQTTRVRMHAVLNNENVQLIFIDTPGIFSPKT 71

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSDLY-- 332
            +EK  +K  ++ ++  + ++LL ++ +      +K IS  K  NI+ I +  K D    
Sbjct: 72  KLEKFIVKHAWMSLKGIENVILLLDVKNYLNKHIEKIISRIKQSNINAILVVNKIDTVPT 131

Query: 333 STYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           S+  +  +H+            S+    GL  L++ +  I  N     P    S     +
Sbjct: 132 SSVDKAIEHMYSLHSFSKTFTISALHDIGLSRLVDYLCEISPNGPWLYPEDQISDAPLKF 191

Query: 382 HLSQTVRYLEMASL-NEKDCGLDIIAENLRL 411
            +++  R     SL +E    L ++ E L  
Sbjct: 192 FMAEITREKLFLSLHHELPYSLSVVTEALEE 222


>gi|49474155|ref|YP_032197.1| GTP-binding protein hflX [Bartonella quintana str. Toulouse]
 gi|49239659|emb|CAF26030.1| GTP-binding protein hflX [Bartonella quintana str. Toulouse]
          Length = 447

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 31/222 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + +   I+ ++ ++ + I    L    R   +   + ++G++N GKS+LFN L+  
Sbjct: 181 EADRRLLQEKIIRIRRELETVIKTRALHRAKRKKTSHPVVALVGYTNTGKSTLFNRLSGA 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           D A+  D+   T D +   + L  G  + +SDT G             + T  EV  ADL
Sbjct: 241 D-ALEKDMLFATLDPIVRKVILPHGKTILLSDTVGFISNLPTNLIAAFRATLEEVVEADL 299

Query: 302 ILLLKEINSKK---------------EISFPKNIDFIFIGTKSDLYSTYT---------- 336
           IL +++++                   I        I +  K D+   Y           
Sbjct: 300 ILHVRDMSDLDHRAHAQDVLEVLSGLGIDTDDTEHIIEVWNKIDILDEYALNVLQTSVKT 359

Query: 337 -EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                 ++S+   +GL++L+  I+  +  + + +   +  H+
Sbjct: 360 RLNPAVMVSALKSDGLDQLLAAIEKRIFGEMQSIECLLRPHE 401


>gi|94500521|ref|ZP_01307052.1| probable GTP-binding protein [Oceanobacter sp. RED65]
 gi|94427311|gb|EAT12290.1| probable GTP-binding protein [Oceanobacter sp. RED65]
          Length = 436

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 98/271 (36%), Gaps = 25/271 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +  + + L   W   L   +  I        + +      ++ + 
Sbjct: 115 RARTHEGKLQVELAQLQHQSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDRIK 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + +   QG+      +   + ++G++NAGKS+LFNAL  +      D    T
Sbjct: 174 LIHKRLAKVQTQREQGRRARKRSSTPSVSLVGYTNAGKSTLFNALT-EAKVYAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-INSKK 312
            D     + ++G   V + DT G          E  K T  E + ADL+L + +  +  +
Sbjct: 233 LDPTLRRIPIQGLGEVVLVDTVGFIRHLPHKLVEAFKATLQETQEADLLLHVIDSADEDR 292

Query: 313 EISFPK-----------NIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +++  +           +   + +  K DL        D            S+   +GLE
Sbjct: 293 QLNMEQVEIVLDEIEALDRPTLQVFNKIDLLPGQKPRIDRDDQGLPWRVWASAKDSQGLE 352

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
            +   I  +LS    +    +   +  L  L
Sbjct: 353 LIRQAIGELLSQTLFEQTIELTPQESQLRAL 383


>gi|85059764|ref|YP_455466.1| GTP-binding protein Era [Sodalis glossinidius str. 'morsitans']
 gi|84780284|dbj|BAE75061.1| GTP-binding protein [Sodalis glossinidius str. 'morsitans']
          Length = 301

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N    + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQFLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     + + +L++ + E        E+   K    N   +    K D   
Sbjct: 71  KRAINRLMNRAASSSICDVELVIFVVEGTHWTPDDEMVVNKLHDVNCPVVLAINKVDNVT 130

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L    +  +   I +  G  +E L   ++  L       P    + +  
Sbjct: 131 DKEQLLPHMQFLSQQISFHHIVPICAENGMNVETLAGIVRKALPEAVHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|304388060|ref|ZP_07370189.1| GTP-binding protein Era [Neisseria meningitidis ATCC 13091]
 gi|304337917|gb|EFM04057.1| GTP-binding protein Era [Neisseria meningitidis ATCC 13091]
 gi|319410060|emb|CBY90394.1| putative Era-like GTP-binding protein [Neisseria meningitidis WUE
           2594]
          Length = 313

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 42/219 (19%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +  +  R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 8   DIETFLAGERAADGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 66

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----------------ENADLILLL 305
              +       DT G +        + + +   E                  +AD ++L 
Sbjct: 67  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVL- 125

Query: 306 KEINSKKEISFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGE 349
                      PK+   I +  K D                + + +       +S+  G 
Sbjct: 126 --------KQLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGL 177

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            +  L+  IK  L       P  + + K   +   + VR
Sbjct: 178 RIANLLELIKPYLPESVPMYPEDMVTDKSARFLAMEIVR 216


>gi|221135074|ref|ZP_03561377.1| GTP-binding protein Era [Glaciecola sp. HTCC2999]
          Length = 303

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 67/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           I I+G  N GKS++ N L  + V+I +  P TTR  +              DT G+  E 
Sbjct: 14  IAIVGRPNVGKSTILNRLIGQKVSITSRKPQTTRHRIMGIDSEGDKQAIYVDTPGLHSEE 73

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     +    L+L + E     +   +   K     I+   I  KSD   
Sbjct: 74  KRAINRYMNRAASSSLGEVSLVLFVVEGTRFTADDAMVLEKIKASGIECWAIVNKSDNVE 133

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L   +   +   +S+  G  L EL + + + L       P    + +  
Sbjct: 134 DKQQLLAHLTWLDEQHDFAHVMPVSAKLGRYLPELRDMVMAQLPQSEFYYPEEYVTDRSS 193

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 194 RFMAAEIIR 202


>gi|268318261|ref|YP_003291980.1| GTP-binding proten HflX [Rhodothermus marinus DSM 4252]
 gi|262335795|gb|ACY49592.1| GTP-binding proten HflX [Rhodothermus marinus DSM 4252]
          Length = 442

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 91/227 (40%), Gaps = 24/227 (10%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAI 246
             + +   I  L+  +     Q       R  Y ++ ++G++NAGKS+L N LA  +V +
Sbjct: 167 DRRLIARRIAVLRERLERIDRQRTTQRKKRQRYTRVSLVGYTNAGKSTLMNVLAGTNV-L 225

Query: 247 VTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D    T D  T  + LE G  V +SDT G          E  K T  EV  +D++L L
Sbjct: 226 AEDRLFATLDATTRLVHLEPGKPVLLSDTVGFIRKLPHRLIESFKSTLDEVRESDVLLHL 285

Query: 306 KEINSKKEISFPK------------NIDFIFIGTKSD------LYSTYTEEYD--HLISS 345
            +    +     +            +   + +  K D      L      EY     IS+
Sbjct: 286 VDATHPRFEDHIQVVHETLAELGAADKPMLLVFNKIDRLADLGLLQALRTEYPEAVFISA 345

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLE 391
             G GLEEL  +++  +  +  +L   +P  + R L +L Q    LE
Sbjct: 346 LRGIGLEELKRRLQERIEAEALELDVCVPLTEGRTLSYLYQVADVLE 392


>gi|257065788|ref|YP_003152044.1| small GTP-binding protein [Anaerococcus prevotii DSM 20548]
 gi|256797668|gb|ACV28323.1| small GTP-binding protein [Anaerococcus prevotii DSM 20548]
          Length = 382

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 7/165 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G +NAGKS+  N +   D AIV+++ GTT D +   +++  +  V   DTAG
Sbjct: 7   ERVHIGIFGKTNAGKSTFLNYMTGTDTAIVSEVAGTTTDPVRKAMEITDFGPVLFIDTAG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP---KNIDFIFIGTKSDLY- 332
             +   +  K  I ++   ++  D+ +    ++   EI      +N   I++  K D   
Sbjct: 67  FFDKSTLGSKR-IAKSLAIIDKCDIFIYCLSLDEDFEILKEIKKRNKPIIYVAGKQDRDE 125

Query: 333 -STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            +   E+Y  L         ++   KI + + N +KK   +I  +
Sbjct: 126 GAKIYEKYQALSPITIDVRNKDDRLKIFAKIKNLYKKEDLTITRN 170


>gi|172040561|ref|YP_001800275.1| putative GTP-binding protein [Corynebacterium urealyticum DSM 7109]
 gi|171851865|emb|CAQ04841.1| putative GTP-binding protein [Corynebacterium urealyticum DSM 7109]
          Length = 506

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 91/219 (41%), Gaps = 28/219 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + +  ++  L+ +I++  +        R+     ++ I G++NAGKSSL NAL   
Sbjct: 231 EADRRRLRAEMARLRKEIAAMKTSRDTKRQRRDASAVPQVAIAGYTNAGKSSLINALTGA 290

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +V D    T D  T   +L +G  V  SDT G          E  + T  EV  AD+
Sbjct: 291 GV-LVEDALFATLDPTTRRAELADGRSVIFSDTVGFVRHLPTQLVEAFRSTLEEVMAADV 349

Query: 302 ILLLKEINSKKEISFPKNIDF----------------IFIGTKSDLYS-------TYTEE 338
           +L + + +    +   ++++                 I +  K D           +   
Sbjct: 350 VLHVVDGSDPFPLEQIRSVNTVISEIVAESGQDAPPEIMVVNKIDKADPLVLAELRHKLN 409

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
               +S+ TGEG++EL  +++  L++  +   F++P  +
Sbjct: 410 DVVFVSAHTGEGIDELETRLELFLNSLDETGVFAVPFDR 448


>gi|239831858|ref|ZP_04680187.1| GTP-binding proten HflX [Ochrobactrum intermedium LMG 3301]
 gi|239824125|gb|EEQ95693.1| GTP-binding proten HflX [Ochrobactrum intermedium LMG 3301]
          Length = 472

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 104/278 (37%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + + +
Sbjct: 148 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQD 204

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +   +V +  D+ 
Sbjct: 205 KILKIKRELETVVRTRTLHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAEV-LAEDML 263

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 264 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 323

Query: 311 KKEISFPKN---------------IDFIFIGTKSDLYSTYT-------------EEYDHL 342
               +  ++                  + I  K D                   E     
Sbjct: 324 PDNAAQAEDVESILAGLGIEPQDRKRVVEIWNKIDNLDESGREAALRLAAAGSEEGRPIP 383

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +   + HL
Sbjct: 384 LSAITGEGVDRLLSLIETRIAGSLGAVDVVLSPFELHL 421


>gi|68536185|ref|YP_250890.1| putative GTP-binding protein [Corynebacterium jeikeium K411]
 gi|68263784|emb|CAI37272.1| putative GTP-binding protein [Corynebacterium jeikeium K411]
          Length = 484

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 33/245 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + + +D+  L+ +I++  +  ++    R+     +I I G++NAGKSSL NAL   
Sbjct: 223 EADRRRLRSDMAKLRKEIAAMKTSREVKRERRDASAIPQIAIAGYTNAGKSSLINALTGA 282

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +V D    T D  T   +L +G  V  SDT G          E  + T  EV  AD+
Sbjct: 283 GV-LVEDALFATLDPTTRRANLADGRAVVFSDTVGFVRHLPTQLVEAFRSTLEEVLAADV 341

Query: 302 ILLLKEINSKKEISFPKNIDF----------------IFIGTKSDLYSTY-TEEYDH--- 341
           +L + + +    +   K ++                 I +  K D        E  H   
Sbjct: 342 VLHVVDGSDPFPLEQIKAVNTVIGGIVEESGQEAPPEILVINKIDAADPLVLAELRHRIP 401

Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               +S+ TGEG+ EL  +++  L++    +   +P  +  +       +  E+ ++ E+
Sbjct: 402 DAVYVSAKTGEGIPELEAQLELFLNSLDTHVTLHVPFDRGDVVA-----KLHELGTVLEE 456

Query: 399 DCGLD 403
           D   D
Sbjct: 457 DYDAD 461


>gi|225021216|ref|ZP_03710408.1| hypothetical protein CORMATOL_01228 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945949|gb|EEG27158.1| hypothetical protein CORMATOL_01228 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 560

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 89/219 (40%), Gaps = 28/219 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + + +D+  L+ +I+   +  ++    R      +I I G++NAGKSSL NA+   
Sbjct: 295 EADRRRLRSDMAKLRKEIAGMQTAREIKRSRRRASTIPQIAIAGYTNAGKSSLINAITGA 354

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +V D    T D  T   +L +G  V  +DT G          E  + T  EV  ADL
Sbjct: 355 GV-LVEDALFATLDPTTRRAELADGRTVVFTDTVGFVRHLPTQLVEAFRSTLEEVVGADL 413

Query: 302 ILLLKEINSK---KEISFPKN-------------IDFIFIGTKSDLYS-------TYTEE 338
           +L + + +     K+I+                    I +  K D           +  +
Sbjct: 414 VLHVVDGSDPFPLKQIAAVNKVIGEIVQEYGETAPPEIIVVNKIDAADPLVLAELRHAVD 473

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
               +S+ TGEG+ EL  +I+  L++    +   +P  +
Sbjct: 474 DVVFVSAHTGEGISELEARIELFLNSLDSHVELLVPFTR 512


>gi|154488911|ref|ZP_02029760.1| hypothetical protein BIFADO_02220 [Bifidobacterium adolescentis
           L2-32]
 gi|154083048|gb|EDN82093.1| hypothetical protein BIFADO_02220 [Bifidobacterium adolescentis
           L2-32]
          Length = 496

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 92/258 (35%), Gaps = 29/258 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + + I  L+  I+        K G   R G   + ++G++NAGKSSL N L   
Sbjct: 239 EMDRRVIRSRIAKLRRQIAQMAPARDVKRGARRRFGLPTVAVVGYTNAGKSSLTNRLTGS 298

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G L    DT G          E  K T  EV +ADLI
Sbjct: 299 AELVENALFATLDTAVRRAKAKDGRLYAYVDTVGFVRRLPTQLIEAFKSTLEEVADADLI 358

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEYD-------HL 342
           + + + +                +I   + I  I    K+D       E         H+
Sbjct: 359 VHVVDGSHPDPFSQIDAVNDVLSDIDGVETIPTIVAFNKADRMDEAARERIEALMPEAHI 418

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+F+GEG++ L   ++S+L      +   +P     L    +    +      +    L
Sbjct: 419 VSAFSGEGVDALREHVESMLPTPNVHVEALLPYTAGSLMSRVREYGKVINVEYRDDGMML 478

Query: 403 D------IIAENLRLASV 414
           +      + A+ +  A  
Sbjct: 479 EAEVDDQLAAQIVEQAID 496


>gi|58581479|ref|YP_200495.1| GTP-binding protein Era [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623409|ref|YP_450781.1| GTP-binding protein Era [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|81311900|sp|Q5H1R1|ERA_XANOR RecName: Full=GTPase Era
 gi|123522358|sp|Q2P4M0|ERA_XANOM RecName: Full=GTPase Era
 gi|58426073|gb|AAW75110.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367349|dbj|BAE68507.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 299

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 82/226 (36%), Gaps = 29/226 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + ++G  N GKS+L NAL    V+IV++ P TTR  L          + + DT G+ RE 
Sbjct: 13  VAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQ 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------------NSKKEISFPKNIDFIFIG 326
              + +   +     +E  D  +L+ E               +  +            + 
Sbjct: 73  KRAMNRVMNRAARGSLEGVDAAVLVIEAGRWDEEDTLAFRVLSDAEVPVVLVVNKVDRLK 132

Query: 327 TKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K+ L     +          H +S+   +GLE L+  +  ++            + +  
Sbjct: 133 DKTALLPFLAQVSEGRTFAAVHPVSALKRKGLEALVGDLLKLVPEAEAMFGEDEITDRSQ 192

Query: 380 LYHLSQTVRYLEMASLNEK-----DCGLDIIAENLRLASVSLGKIT 420
            +   + VR   M  L E+        ++  AE+   A + +G + 
Sbjct: 193 RFLAGELVREQLMRQLGEELPYATTVEIERFAED--GALLRIGAVI 236


>gi|157371903|ref|YP_001479892.1| GTP-binding protein Era [Serratia proteamaculans 568]
 gi|157323667|gb|ABV42764.1| GTP-binding protein Era [Serratia proteamaculans 568]
          Length = 302

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTDGAYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E     +  E+   K        +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTNWTADDEMVVNKLRSLKCPVLLAINKVDNVT 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             ++   H               IS+  G  ++ +    + +L       P    + +  
Sbjct: 131 DKSKLLPHIAFLSQQMNFLDVVPISAEKGMNVDTIAAIARKVLPEAEHHFPDDYITDRSQ 190

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 191 RFMASEIIREKLMRFLGEE 209


>gi|295092241|emb|CBK78348.1| GTP-binding protein HflX [Clostridium cf. saccharolyticum K10]
          Length = 417

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 91/236 (38%), Gaps = 20/236 (8%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
             + L+ +   I       ++ +V      E +  +     ++  H    +         
Sbjct: 143 LRNSLSRLGGGIGTRGPGEKKLEVDRRLIHERIGQLKSELENVKRHREVARQQRDRNCTV 202

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
              I+G++NAGKS+L N L    + +  D+   T D  T  L+L  G  + ++DT G   
Sbjct: 203 SAAIVGYTNAGKSTLLNYLTDAGI-LAQDMLFATLDPTTRTLELPSGQKILLTDTVGFIR 261

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGT 327
                  E  K T  E   +D+IL + ++++ +  +               +   I +  
Sbjct: 262 KLPHHLIEAFKSTLEEARYSDIILHVVDVSNPQMETQIHIVYETLRQLEITDKTVITVFN 321

Query: 328 KSD------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           K D      +   +  ++   IS+ TGEG+  L+  ++ IL ++   L    P  +
Sbjct: 322 KMDRLTGDVILRDFRSDFQVKISAKTGEGIPALLETLEGILRSRKVYLEKVFPYAQ 377


>gi|255556681|ref|XP_002519374.1| GTP-binding protein enga, putative [Ricinus communis]
 gi|223541441|gb|EEF42991.1| GTP-binding protein enga, putative [Ricinus communis]
          Length = 635

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 17/157 (10%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N      ND + + S  ++ E  +   ++ I+G  N GKS+L N L +++  +V    G 
Sbjct: 308 NCNQHSSNDATHYDSSSEVEEDSKLPMQLAIVGRPNVGKSTLLNTLLQEERVLVGPEVGL 367

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINS 310
           TRD +    D +G  + + DTAG       +       I ++   +  A ++ L+ +   
Sbjct: 368 TRDSIRSQFDFQGRTIYLVDTAGWLHRTGQEKGPSSLSIVQSRKNLMRAHVVALVLDAAE 427

Query: 311 KKEI--------------SFPKNIDFIFIGTKSDLYS 333
             +               +  +    + I  K DL  
Sbjct: 428 IAKARRSMTHAEVVIARRAVEEGRGLVVIVNKMDLLQ 464



 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 6/155 (3%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
           Q  ++    R+F     +   E D  +    E+ + +   K      I   K+   +   
Sbjct: 69  QLRERWQLSRAFCSIHKNEMSELDSDDIICSELDSVVKEEKVSDEKLIDFTKIDSNLL-- 126

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP--GTTRDVLTIDLDLEGYLVKISDTAGI 277
             ++I+G  N GKS+LFN L ++  A+V + P    TRD+      L     ++ D+AG+
Sbjct: 127 PTVIIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFRVLDSAGL 186

Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
               T   + +     T   +      + L ++ +
Sbjct: 187 ETEATSGSILQRTTSMTANVLARTQFAIFLIDVRA 221


>gi|254418675|ref|ZP_05032399.1| GTP-binding protein Era [Brevundimonas sp. BAL3]
 gi|196184852|gb|EDX79828.1| GTP-binding protein Era [Brevundimonas sp. BAL3]
          Length = 315

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 36/187 (19%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+   I+G  NAGKS+L N L    V+IVT    TTR  +          + + D
Sbjct: 5   ENQRAGF-AAIIGAPNAGKSTLVNRLTGSKVSIVTQKVQTTRFPVRGIAMEGDAQIVLVD 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----------------NSKKEISF 316
           T GI      +++  +   +   ++AD+++ L +                  +++   + 
Sbjct: 64  TPGIFTPRRRLDRAMVASAWGGAQDADVVVHLIDAQSHINAEGREGTAADRRSAEDTETI 123

Query: 317 PKN-----IDFIFIGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKI 358
             N        I    K D             L+ +   +  ++IS+  G+G+E+L  ++
Sbjct: 124 IANLQSTGTKVILALNKIDGMRRDTLLALSQTLFESGVYDEVYMISAANGDGVEDLKQRL 183

Query: 359 KSILSNK 365
              +   
Sbjct: 184 ARSMPKG 190


>gi|330828483|ref|YP_004391435.1| GTP-binding protein era [Aeromonas veronii B565]
 gi|328803619|gb|AEB48818.1| GTP-binding protein era [Aeromonas veronii B565]
          Length = 299

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +      + Y     DT G+  E 
Sbjct: 10  VAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRILGIDTEDNYQTIYVDTPGLHIEE 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + +  +++ + +        E+   K        +    K D   
Sbjct: 70  KRAINRLMNRAATSSLGDVAMVVFMVDGTHWTKDDEMVLGKLRNLKCPVVLAVNKIDNVK 129

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+  G  +E++    K +L       P    + +  
Sbjct: 130 EKEDLLPHLEWLGQQMNFAHILPISAEKGTNVEKIREWAKDLLPENVHFFPEDYVTDRSS 189

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 190 RFMASEIIR 198


>gi|325915828|ref|ZP_08178127.1| GTP-binding protein Era [Xanthomonas vesicatoria ATCC 35937]
 gi|325537949|gb|EGD09646.1| GTP-binding protein Era [Xanthomonas vesicatoria ATCC 35937]
          Length = 299

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 84/226 (37%), Gaps = 29/226 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + ++G  N GKS+L NAL    V+IV++ P TTR  L          + + DT G+ RE 
Sbjct: 12  VAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLALVDTPGLHREQ 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------------NSKKEISFPKNIDFIFIG 326
              + +   +     +E  D  +L+ E               +  +            + 
Sbjct: 72  KRAMNRVMNRAARGSLEGVDAAVLVIEAGRWDEEDTLAFRVLSDAEVPVVLVVNKVDRLK 131

Query: 327 TKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K+ L+    +          H +S+   +GLE L++ +  ++            + +  
Sbjct: 132 DKTALFPFLAQVSEGRTFAAVHPVSALKRKGLEALVSDLLKLVPEAEAMYGEDEITDRSQ 191

Query: 380 LYHLSQTVRYLEMASLNEK-----DCGLDIIAENLRLASVSLGKIT 420
            +   + VR   M  L E+        ++  AE+   A + +G + 
Sbjct: 192 RFLAGELVREQLMRQLGEELPYATTVEIERFAED--GALLRIGAVI 235


>gi|237815534|ref|ZP_04594531.1| GTP-binding proten HflX [Brucella abortus str. 2308 A]
 gi|237788832|gb|EEP63043.1| GTP-binding proten HflX [Brucella abortus str. 2308 A]
          Length = 505

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 181 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 237

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 238 KILRIKRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 296

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 297 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 356

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 357 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAVGSEEGRPIP 416

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 417 VSAITGEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 454


>gi|21220998|ref|NP_626777.1| GTP-binding protein Era [Streptomyces coelicolor A3(2)]
 gi|256787839|ref|ZP_05526270.1| GTP-binding protein Era [Streptomyces lividans TK24]
 gi|289771724|ref|ZP_06531102.1| GTP-binding protein Era [Streptomyces lividans TK24]
 gi|6714753|emb|CAB66217.1| Era-like GTP-binding protein [Streptomyces coelicolor A3(2)]
 gi|289701923|gb|EFD69352.1| GTP-binding protein Era [Streptomyces lividans TK24]
          Length = 320

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 9/138 (6%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           S  +  E +        +G  NAGKS+L NAL  + VAI ++ P TTR  +   +  E  
Sbjct: 10  SSEEPAETVHRAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHREDA 69

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPK 318
            + + DT G+ +   ++ +             D+I      N K         KE++  +
Sbjct: 70  QLILVDTPGLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPANEKLGPGDRFIAKELAGIR 129

Query: 319 NIDFIFIGTKSDLYSTYT 336
               + I TK+DL  + T
Sbjct: 130 KTPKVAIVTKTDLVDSKT 147


>gi|307942253|ref|ZP_07657604.1| GTP-binding protein HflX [Roseibium sp. TrichSKD4]
 gi|307774539|gb|EFO33749.1| GTP-binding protein HflX [Roseibium sp. TrichSKD4]
          Length = 463

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 98/251 (39%), Gaps = 34/251 (13%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDV 244
             +++ + I  L+  +        L    R       + ++G++NAGKS+LFN + + +V
Sbjct: 200 DRRQIQDRITALQKQLEQVRRTRDLHRKKRKKIPQPVVALVGYTNAGKSTLFNRMTESNV 259

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D+   T D     + L  G  + +SDT G             + T  EV  ADLIL
Sbjct: 260 -FAKDLLFATLDPTLRKIRLPHGREIILSDTVGFISDLPTHLVAAFRATLEEVLEADLIL 318

Query: 304 LLKEINSKKEISFPKNI---------------DFIFIGTKSD---------LYSTYTEEY 339
            +++I+     +  +++                 I +  K D         L     EE 
Sbjct: 319 HVRDISHPDSEAQCEDVKKTLVDLGVDGSHAAPVIEVWNKIDALDPAYREKLLEDAAEEG 378

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
              +S+ TGEG+  L  +I + ++         +P  +  L       +  +++ + E++
Sbjct: 379 PVSLSALTGEGVTSLYGRIDAFMAQHDDLFTVKLPVFEGALLA-----QLYQLSEVMERE 433

Query: 400 CGLDIIAENLR 410
            G + I   +R
Sbjct: 434 DGEEFITAEVR 444


>gi|261402146|ref|YP_003246370.1| small GTP-binding protein [Methanocaldococcus vulcanius M7]
 gi|261369139|gb|ACX71888.1| small GTP-binding protein [Methanocaldococcus vulcanius M7]
          Length = 183

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 35/178 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL----------DLEGYLV 269
           +KI I+G  N GKSS+ NAL  K V++V+++ GTT+  +              + E   +
Sbjct: 4   FKIAIVGAENVGKSSIMNALFGKHVSMVSEVAGTTKMPIKKYWGKFKIGRVKEEPEFAKL 63

Query: 270 KISDTAGIRETDDIVEKEG----IKRTFLEVENADLILLLKE-----INSKKEISFPKNI 320
              D  G+    D          +++TF E+  AD+IL + +     + S +++      
Sbjct: 64  IFVDLGGLYAKSDSQSPIMTPKILEKTFKEINEADMILHIIDGTVGLLRSSEKLHHILKF 123

Query: 321 ----DFIFIGTKSDLYSTYTEEY------------DHLISSFTGEGLEELINKIKSIL 362
                 I +  K DL +   +E                +S+ T EG+ +LIN I   L
Sbjct: 124 RYQKPIIVVINKCDLLNAEEKEQLREYVERRLNNSPIFVSAKTLEGIPDLINAIVKYL 181


>gi|77456752|ref|YP_346257.1| GTP-binding protein, HSR1-like [Pseudomonas fluorescens Pf0-1]
 gi|77380755|gb|ABA72268.1| GTP-binding protein HflX [Pseudomonas fluorescens Pf0-1]
          Length = 433

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 104/297 (35%), Gaps = 27/297 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L      I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLDHMSTRLVRGWTH-LERQGGGIGMRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN + K +V    D    T
Sbjct: 174 QIKRRLEKVRSQREQSRRGRSRADIPTVSLVGYTNAGKSTLFNNVTKSEV-YAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     LDL+    + ++DT G          E  + T  E  N+DL+L + +      
Sbjct: 233 LDPTLRRLDLDDLGPIVLADTVGFIRHLPHKLVEAFRSTLEESSNSDLLLHVIDAAEPDR 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +               +++  + +  K DL      +             +S+  G GLE
Sbjct: 293 MLQIEQVMVVLGEIGAQDLPILEVYNKLDLLEGVEPQIQRDENGKPQRVWLSARDGTGLE 352

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            L   I  +L +       ++   +R     +Q      +      + G+ ++A  L
Sbjct: 353 LLEQAIAELLGSDL--FVGTLRLPQRFARLRAQFFELGAVQKEEHDEEGVSLLAVRL 407


>gi|254428300|ref|ZP_05042007.1| GTP-binding protein Era [Alcanivorax sp. DG881]
 gi|196194469|gb|EDX89428.1| GTP-binding protein Era [Alcanivorax sp. DG881]
          Length = 292

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +   L  + Y +  +DT GI    
Sbjct: 2   VSIVGRPNVGKSTLMNHLIGQKVSITSRKPQTTRHRIHGILSRDNYQIIFADTPGIHTGQ 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNI--DFIFIGTKSD-- 330
           +  + +   +     +   D+I ++ +       +       P+      + I  K D  
Sbjct: 62  EKALNRAMNEAAVSTLFGVDVICMMVDAMKWTPADEHVLSLLPEKDQVPVLLIINKVDNV 121

Query: 331 ------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                       L   Y  +    +S+   + L EL   +   L            + + 
Sbjct: 122 DDKAALLPHIQTLSERYPFDAVIPVSALREQNLVELEKALVQRLPEGEFWYEEDQLTDRS 181

Query: 379 HLYHLSQTVR 388
             + +++ +R
Sbjct: 182 LRFMVAEIIR 191


>gi|13959364|sp|Q9RDF2|ERA_STRCO RecName: Full=GTPase Era
          Length = 317

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 9/138 (6%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           S  +  E +        +G  NAGKS+L NAL  + VAI ++ P TTR  +   +  E  
Sbjct: 7   SSEEPAETVHRAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHREDA 66

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPK 318
            + + DT G+ +   ++ +             D+I      N K         KE++  +
Sbjct: 67  QLILVDTPGLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPANEKLGPGDRFIAKELAGIR 126

Query: 319 NIDFIFIGTKSDLYSTYT 336
               + I TK+DL  + T
Sbjct: 127 KTPKVAIVTKTDLVDSKT 144


>gi|225627584|ref|ZP_03785621.1| GTP-binding proten HflX [Brucella ceti str. Cudo]
 gi|225617589|gb|EEH14634.1| GTP-binding proten HflX [Brucella ceti str. Cudo]
          Length = 505

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 181 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 237

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 238 KILRIKRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 296

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 297 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 356

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 357 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAAGSEEGRPIP 416

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 417 VSAITGEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 454


>gi|144899861|emb|CAM76725.1| GTP-binding protein Era [Magnetospirillum gryphiswaldense MSR-1]
          Length = 303

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+L N L    V+IV+    TTR  +   L      V + DT GI +  
Sbjct: 14  VAIVGAPNAGKSTLTNGLVGTKVSIVSPKVQTTRFRVLGILMTGPAQVILVDTPGIFQPK 73

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDF--IFIGTKS---- 329
             +++  +   +    +A++I L+ +       +++  I   K      I +  K     
Sbjct: 74  RRLDRAMVAAAWHGASDAEIICLMVDAHRGLDDDTRAIIDKLKGAKREAILVLNKVDMVK 133

Query: 330 -----DLYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                DL +   EE       ++S+  G+GL +L   +   +       P    S     
Sbjct: 134 KERLLDLTARLHEEGIFTDVFMVSALKGDGLADLSKVLSDRVPLGPWMFPEDEVSDLPQR 193

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+E+
Sbjct: 194 MLAAEITREKAFIQLHEE 211


>gi|268681563|ref|ZP_06148425.1| GTPase [Neisseria gonorrhoeae PID332]
 gi|268621847|gb|EEZ54247.1| GTPase [Neisseria gonorrhoeae PID332]
          Length = 313

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 75/213 (35%), Gaps = 30/213 (14%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +  +  R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 8   DIETFLAGERAADGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 66

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----------ENADLILLLKEINSK 311
              +       DT G +        + + +   E             A   + L + +  
Sbjct: 67  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVVVFVVEA---MRLTDADRV 123

Query: 312 KEISFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELI 355
                PK+   I +  K D                + + +       +S+  G  +  L+
Sbjct: 124 VLKQLPKHTPVILVINKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLL 183

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             +K  L       P  + + K   +   + VR
Sbjct: 184 ELLKPYLPESVPMYPEDMVTDKSARFLAMEIVR 216


>gi|227112906|ref|ZP_03826562.1| GTP-binding protein Era [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 301

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +LI+ + E    N   ++   K     +  +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELIIFVVEGTHWNDDDDMVLNKLRDQKLPVLLAINKVDNVT 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T+   H+               S+  G  ++ + N ++  L       P    + +  
Sbjct: 131 DKTKLLPHIQFLSQQMDFLDVVPISAEKGTNVDTIANIVRKHLPQATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 191 RFMASEIIREKLMRFLGEE 209


>gi|182679392|ref|YP_001833538.1| GTP-binding protein Era [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635275|gb|ACB96049.1| GTP-binding protein Era [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 316

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 22/195 (11%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I R G+ + ++G  NAGKS+L N L    ++IV+    TTR ++          +   DT
Sbjct: 7   ITRCGF-VALIGAPNAGKSTLINRLVGAKISIVSRKVQTTRCLVRGIATEGASQIIFVDT 65

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPKNIDFI----FIG 326
            GI      +++  +   +    +AD++ LL +    I+ + E    K          + 
Sbjct: 66  PGIFAPKRRLDQAMVTSAWGGAGDADVVALLVDARKGIDEEVEAILAKLPQVRAKKLLVL 125

Query: 327 TKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D                        +IS+  G G+++L N +  ++       P   
Sbjct: 126 NKIDTIEPPRLLALAADLNARIDFSETFMISALRGHGVDKLKNLLGEMMKEGPWLYPEDQ 185

Query: 374 PSHKRHLYHLSQTVR 388
            S        ++  R
Sbjct: 186 ISDAPLRMLAAEITR 200


>gi|24372927|ref|NP_716969.1| GTP-binding protein Era [Shewanella oneidensis MR-1]
 gi|24347063|gb|AAN54414.1|AE015579_3 GTP-binding protein Era [Shewanella oneidensis MR-1]
          Length = 339

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 71/214 (33%), Gaps = 26/214 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +          +   DT G+  E 
Sbjct: 48  VAIIGRPNVGKSTLLNRLLGQKISITSKKPQTTRHRIMGIHTDGPRQIVFIDTPGLHIEE 107

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK------NIDFIFIGTKS-- 329
              + +   +     + +  +++ + +     +  E+   K          +    K   
Sbjct: 108 QRAINRLMNRAAASSLADVSMVIFVVDGMTWTADDEMVLSKLRRGGEERKTVLAINKVDN 167

Query: 330 ------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                       D+   Y  +    IS+  G  ++ ++      L       P    + +
Sbjct: 168 IKDKEALFPYLEDVAKKYPFDEILPISASKGTNVKRILELAAQSLPENPFFFPEDYVTDR 227

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
              +  S+ VR   M  L + +   D     +  
Sbjct: 228 SQRFMASEIVREKLMRFLGD-ELPYD-ATVEIEQ 259


>gi|218767810|ref|YP_002342322.1| GTP-binding protein Era [Neisseria meningitidis Z2491]
 gi|13959356|sp|Q9JVD2|ERA_NEIMA RecName: Full=GTPase Era
 gi|121051818|emb|CAM08124.1| putative GTPase [Neisseria meningitidis Z2491]
          Length = 307

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 42/219 (19%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +  +  R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 2   DIETFLAGERAADGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 60

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----------------ENADLILLL 305
              +       DT G +        + + +   E                  +AD ++L 
Sbjct: 61  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVL- 119

Query: 306 KEINSKKEISFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGE 349
                      PK+   I +  K D                + + +       +S+  G 
Sbjct: 120 --------KQLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGL 171

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            +  L+  IK  L       P  + + K   +   + VR
Sbjct: 172 RIANLLELIKPYLPESVPMYPEDMVTDKSARFLAMEIVR 210


>gi|302534327|ref|ZP_07286669.1| GTP-binding protein Era [Streptomyces sp. C]
 gi|302443222|gb|EFL15038.1| GTP-binding protein Era [Streptomyces sp. C]
          Length = 316

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+    +G  NAGKS+L NAL    VAI ++ P TTR  +   +      + + DT G
Sbjct: 16  RAGF-ACFVGRPNAGKSTLTNALVGTKVAITSNRPQTTRHTVRGIVHRPDAQLVLVDTPG 74

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++ +             D+I      + K         KE++  K    I I T
Sbjct: 75  LHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKFIAKELAGIKKTPKIAIVT 134

Query: 328 KSDLYST 334
           K+DL  +
Sbjct: 135 KTDLVES 141


>gi|118587960|ref|ZP_01545370.1| GTP-binding protein Era [Stappia aggregata IAM 12614]
 gi|118439582|gb|EAV46213.1| GTP-binding protein Era [Stappia aggregata IAM 12614]
          Length = 335

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 74/198 (37%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  NAGKS+L N L    V+IVT    TTR ++          +   DT GI +  
Sbjct: 46  IALIGAPNAGKSTLINQLVGTKVSIVTHKVQTTRTIVRGVAMHGAAQLVFIDTPGIFKPK 105

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
             +++  +   +    +ADLI LL +                       + I  K+D+  
Sbjct: 106 RRLDRAMVDTAWGGARDADLIALLVDARKGLTEEVENILKRLSSQQAPKVLILNKTDVAK 165

Query: 334 TYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                            E   ++S+ TG+G + +++   S + +     P   PS     
Sbjct: 166 REKLLQLAQKINEFVRFEETFMVSALTGDGTQTILDYFASKVPDGPWLFPEDQPSDLPLR 225

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+E+
Sbjct: 226 ILAAEITREKLFERLHEE 243


>gi|146277534|ref|YP_001167693.1| GTP-binding protein, HSR1-related [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555775|gb|ABP70388.1| GTP-binding protein, HSR1-related [Rhodobacter sphaeroides ATCC
           17025]
          Length = 448

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 82/229 (35%), Gaps = 31/229 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   ++ ++  +   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 191 EADRRAIDEQVIRIRRQLDKVVRTRELHRASRRKVPFPIVALVGYTNAGKSTLFNRMTGA 250

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 251 EV-LAKDMLFATLDPTMRGVTLPSGRKVILSDTVGFISDLPTQLVAAFRATLEEVLEADL 309

Query: 302 ILLLKEINSKKEISFPKN-------------IDFIFIGTKSDLYS----------TYTEE 338
           IL +++I   +      +                  +  K DL                E
Sbjct: 310 ILHVRDIAHPETAEQAADVAEILQSLGVKGATPQYEVWNKLDLVEGSAHEQLVAQAQRSE 369

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLS 384
               +S+ TGEGL EL+  + +    +      ++      +R   H  
Sbjct: 370 TVFALSALTGEGLPELLEAVSAAFDEEKTDRTLTLGFADGRRRAWLHAE 418


>gi|332670096|ref|YP_004453104.1| GTP-binding proten HflX [Cellulomonas fimi ATCC 484]
 gi|332339134|gb|AEE45717.1| GTP-binding proten HflX [Cellulomonas fimi ATCC 484]
          Length = 506

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 121/344 (35%), Gaps = 42/344 (12%)

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN-GKIDLLEA 128
           P P ++ G         G  A +  ++  +     +         RRA E+  ++ +++ 
Sbjct: 131 PDPGTYLG--------SGKAAELAMLVASVGADTVVVDGELAPSQRRALEDIVRVKVVDR 182

Query: 129 ESLADLISSETEMQR----RLSMEGMSGELSSLYGQW-----IDKLTHIRSFIEADLDFS 179
            +L   I ++    R    ++ +  +   L      W           +           
Sbjct: 183 TALILDIFAQHAKSREGKAQVELAQLE-YLLPRLRGWGESMSRQAGGQVGGAGAGMGSRG 241

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLF 236
             E       + + N +  L+ +I++     + K     +N    + I G++NAGKSSL 
Sbjct: 242 PGETKIELDRRRIRNRMAKLRREIAAMEPARRTKRASRKKNAIPSVAIAGYTNAGKSSLL 301

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L    V +   +  T    +      +G +  ++DT G          E  + T  EV
Sbjct: 302 NRLTNAGVLVENALFATLDPTVRRAETTDGRVYTLADTVGFVRALPHQLVEAFRSTLEEV 361

Query: 297 ENADLILLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYT------- 336
            +ADL+L + + +                +I    ++  I +  K+D  S          
Sbjct: 362 ADADLLLHVVDASHPDPEGQIAAVRHVFADIPGAMDVPEIIVLNKADRASAEAIARLRSR 421

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           E +  ++S+ TGEG+ EL   I   L      +   +P  +  L
Sbjct: 422 EVHSVVVSAHTGEGIAELQALIADQLPRPGVAVDVVVPYDRGDL 465


>gi|253583497|ref|ZP_04860695.1| GTP-binding protein [Fusobacterium varium ATCC 27725]
 gi|251834069|gb|EES62632.1| GTP-binding protein [Fusobacterium varium ATCC 27725]
          Length = 414

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 28/181 (15%)

Query: 207 ISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
              GK+ E  R N   I I G +NAGKSSL N +  + +++V+D+ GTT D +   ++L 
Sbjct: 6   FRGGKMTETPRGNRVHIAIFGRTNAGKSSLINRITNQKISLVSDVKGTTTDPVYKAMELL 65

Query: 266 GY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------- 317
               V   DTAGI +   ++    I++T   ++  D+ + +    +  E           
Sbjct: 66  PIGPVVFIDTAGIDDVS-LIGTLRIEKTVEVLDKMDIAIFVVSAETILEDETLSYEQKWI 124

Query: 318 -----KNIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIK 359
                K   F+ +  K D+        +               ISS  G  ++ L  +I 
Sbjct: 125 EKIKDKKKPFVAVLNKIDIIDDKENFKNKIVKAEKKLGLNFIQISSENGLNIDILKKEIV 184

Query: 360 S 360
            
Sbjct: 185 E 185


>gi|213965802|ref|ZP_03393994.1| GTP-binding protein Era [Corynebacterium amycolatum SK46]
 gi|213951561|gb|EEB62951.1| GTP-binding protein Era [Corynebacterium amycolatum SK46]
          Length = 319

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 23/223 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
                 E  R+G+ + I+G  N GKS+L N+L  + +AI  + P TTR  +   +  E  
Sbjct: 18  DDYSAPEGFRSGF-VSIVGRPNTGKSTLTNSLVGEKIAITANQPETTRHPVRGVVHRENC 76

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-------ISFPKNI 320
            + + DT G+ +   ++ +           + DL+ ++   + K          +  K  
Sbjct: 77  QIVVVDTPGLHKPRTLLGERLNDMVQETYSDVDLVAMVVPADEKIGPGDRWIYENVSKGC 136

Query: 321 -DFIFIGTKSDLYSTYT--------------EEYDHLISSFTGEGLEELINKIKSILSNK 365
            + + I +K D  S  T              +     +SS +GE +  LI+ + S L   
Sbjct: 137 KNIMGIVSKVDKVSRDTIIERLIELQELLGPDAELVPLSSKSGENINTLIDVMASQLPEG 196

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            +  P    + +     +++ +R   +  L ++      +  +
Sbjct: 197 PRLYPKGHITDEDLHTRMAELIREAALGGLRDELPHSVAVQID 239


>gi|315930710|gb|EFV09724.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 305]
          Length = 288

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKE----ISFPKNIDFIFIGTKSD 330
           G+ E+   + +  ++     + + D+IL +  + +S K+    +S    +  I    K D
Sbjct: 60  GLHESGATLNQLLVQSAIKSIGDCDVILFVASVFDSTKDYENFLSLNPQVPHIIALNKVD 119

Query: 331 LYSTYT 336
           L    T
Sbjct: 120 LTDNAT 125


>gi|117619280|ref|YP_855344.1| GTP-binding protein Era [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117560687|gb|ABK37635.1| GTP-binding protein Era [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 299

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +      E Y     DT G+  E 
Sbjct: 10  VAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRILGIDTEENYQTIYVDTPGLHIEE 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + +  +++ + +        E+   K        +    K D   
Sbjct: 70  KRAINRLMNRAATSSLGDVAMVVFMVDGTHWTKDDEMVLGKLRHLKCPVVLAVNKIDNVK 129

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+  G  +E++    K +L       P    + +  
Sbjct: 130 EKEDLLPHLEWLGQQMNFAHILPISAEKGTNVEKIREWAKDLLPENVHFFPEDYVTDRSS 189

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 190 RFMASEIIR 198


>gi|328954426|ref|YP_004371760.1| GTP-binding protein Era-like-protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454750|gb|AEB10579.1| GTP-binding protein Era-like-protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 306

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 74/187 (39%), Gaps = 20/187 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G  N GKS+L N L  + +AI +  P TTR  L   + L    +   D  GI +  
Sbjct: 18  VALGGVPNVGKSTLLNRLVAEKLAITSPKPQTTRHRLLGIVHLPRAQLLFMDMPGIIDPG 77

Query: 282 DIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFPKNI----DFIFIGTKSDLY-- 332
            ++ +  +      +++AD+++ L    E  ++  +  P         +    K D    
Sbjct: 78  SLLNESLVNTALGTLKDADVVVWLVTPQETAAESRVILPHIRLLAKPVVIAINKIDTIPK 137

Query: 333 -----------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                      S   E     +++ TG+GL  L+ +I ++L       P    + +   +
Sbjct: 138 LEILPLIEFYHSLLPEAPVTPVAALTGDGLPHLLTEIINLLPKAPPLYPDDQLTDQTERF 197

Query: 382 HLSQTVR 388
             ++ +R
Sbjct: 198 LAAEFIR 204


>gi|297248425|ref|ZP_06932143.1| GTP-binding protein HflX [Brucella abortus bv. 5 str. B3196]
 gi|297175594|gb|EFH34941.1| GTP-binding protein HflX [Brucella abortus bv. 5 str. B3196]
          Length = 490

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 166 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 222

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 223 KILRIKRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 281

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 282 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 341

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 342 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAVGSEEGRPIP 401

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 402 VSAITGEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 439


>gi|239931377|ref|ZP_04688330.1| GTP-binding protein Era [Streptomyces ghanaensis ATCC 14672]
 gi|291439747|ref|ZP_06579137.1| GTP-binding protein Era [Streptomyces ghanaensis ATCC 14672]
 gi|291342642|gb|EFE69598.1| GTP-binding protein Era [Streptomyces ghanaensis ATCC 14672]
          Length = 320

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 9/136 (6%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           S  +  E +        +G  NAGKS+L NAL  + VAI ++ P TTR  +   +     
Sbjct: 10  SSEQSAEAVHRAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPDA 69

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPK 318
            + + DT G+ +   ++ +             D+I      + K         KE++  +
Sbjct: 70  QLILVDTPGLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKIGPGDRFIAKELAGIR 129

Query: 319 NIDFIFIGTKSDLYST 334
               + I TK+DL  +
Sbjct: 130 KTPKVAIVTKTDLVDS 145


>gi|227503133|ref|ZP_03933182.1| GTP-binding protein Era [Corynebacterium accolens ATCC 49725]
 gi|227076194|gb|EEI14157.1| GTP-binding protein Era [Corynebacterium accolens ATCC 49725]
          Length = 345

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 79/222 (35%), Gaps = 28/222 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  E   V + D
Sbjct: 45  EGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHTIRGLVHREDAQVVVVD 103

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFI 323
           T G+     ++ +   +       + D+I L    + K             S       I
Sbjct: 104 TPGLHRPRTLLGERLNEVVKETYADVDVIGLTIPADEKIGPGDRWILDNVRSIAPKTPII 163

Query: 324 FIGTKSD-----------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            I TK D                 L     E     +SS  G  L++L+  I   L    
Sbjct: 164 GIVTKLDKASKDQVGAQLLALHELLSQEDPEAVVIPVSSKKGVQLDDLVQVIVDHLPEGP 223

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           K  P    + +     + + +R   ++ L  +      +  +
Sbjct: 224 KFYPDDHITDEGQEKRIEELIREAALSGLKAELPHSVAVQID 265


>gi|170749854|ref|YP_001756114.1| GTP-binding protein Era [Methylobacterium radiotolerans JCM 2831]
 gi|170656376|gb|ACB25431.1| GTP-binding protein Era [Methylobacterium radiotolerans JCM 2831]
          Length = 332

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N L    V+IV+    TTR ++   L      V + DT G
Sbjct: 38  RAGF-VALIGVPNAGKSTLLNNLVGTKVSIVSRKVQTTRALVRGILIEGSAQVVLVDTPG 96

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           I      +++  +   +    +AD + LL +     +               + + I  K
Sbjct: 97  IFAPKRRLDRAMVHSAWSGAADADAVCLLVDARKGVDAEVEAVLGRLGEVKREKLLILNK 156

Query: 329 SDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            DL              +        +IS+  G+G+ +L   + + +       P    S
Sbjct: 157 IDLIPRERLLDLAAKLNAAAPFAETFMISALNGDGVADLRRALAARMPPGPWLYPEDQVS 216

Query: 376 HKRHLYHLSQTVR 388
                   ++  R
Sbjct: 217 DAPLRMLAAEITR 229


>gi|21230731|ref|NP_636648.1| GTP-binding protein Era [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769273|ref|YP_244035.1| GTP-binding protein Era [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188992424|ref|YP_001904434.1| GTP-binding protein Era [Xanthomonas campestris pv. campestris str.
           B100]
 gi|25008429|sp|Q8PB51|ERA_XANCP RecName: Full=GTPase Era
 gi|81304768|sp|Q4USF8|ERA_XANC8 RecName: Full=GTPase Era
 gi|226741404|sp|B0RX26|ERA_XANCB RecName: Full=GTPase Era
 gi|21112324|gb|AAM40572.1| GTP binding protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574605|gb|AAY50015.1| GTP binding protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167734184|emb|CAP52392.1| GTP-binding protein [Xanthomonas campestris pv. campestris]
          Length = 298

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 83/226 (36%), Gaps = 29/226 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + ++G  N GKS+L NAL    V+IV++ P TTR  L          + + DT G+ RE 
Sbjct: 12  VAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLMLVDTPGLHREQ 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--------------NSKKEISFPKNIDFIFIG 326
              + +   +     +E  D  +L+ E               +               + 
Sbjct: 72  KRAMNRVMNRAARGSLEGVDAAVLVIEAGRWDEEDTLAFRVLSDADVPVVLVVNKVDRLK 131

Query: 327 TKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K+ L+    +          H +S+   +GLE L++ +  ++            + +  
Sbjct: 132 DKTALFPFLAQVSEGRTFAAVHPVSALKRKGLEALVSDLLKLVPEAEAMYGEDEITDRSQ 191

Query: 380 LYHLSQTVRYLEMASLNEK-----DCGLDIIAENLRLASVSLGKIT 420
            +   + VR   M  L E+        ++  AE+   A + +G + 
Sbjct: 192 RFLAGELVREQLMRQLGEELPYATTVEIERFAED--GALLRIGAVI 235


>gi|148265040|ref|YP_001231746.1| ferrous iron transport protein B [Geobacter uraniireducens Rf4]
 gi|146398540|gb|ABQ27173.1| ferrous iron transport protein B [Geobacter uraniireducens Rf4]
          Length = 662

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E   +G K+V++G+ N GKS LFNAL    V  V++ PGT+ +V      + G   +I
Sbjct: 14  QAEPQSSGKKVVLVGNPNVGKSVLFNALTGSYVT-VSNYPGTSVEVARGSASIAGGQYQI 72

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFI 325
            DT G+     I E+E + R  L  E+ D++L + +  + + +           +  + +
Sbjct: 73  IDTPGMYSLLPITEEERVAREILLNESPDVVLHVLDARNLERMLTMTLQLIDAQLPVVLV 132

Query: 326 GTKSD------------LYSTYTEEYDHLISSFTGEGLEELINKIK 359
               D            L            ++    GL+E+   I 
Sbjct: 133 VNIMDEAEHMGLSIDIPLLQEKLGIPVIGAATAKKRGLDEIRQAIA 178


>gi|78046933|ref|YP_363108.1| GTP-binding protein Era [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|123585559|sp|Q3BVV5|ERA_XANC5 RecName: Full=GTPase Era
 gi|78035363|emb|CAJ23008.1| GTP-binding protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 300

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 29/226 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + ++G  N GKS+L NAL    V+IV++ P TTR  L          + + DT G+ RE 
Sbjct: 13  VAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQ 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISF-----------PKNIDFIFIG 326
              + +   +     +E  D  +L+ E    + +  ++F                   + 
Sbjct: 73  KRAMNRVMNRAARGSLEGVDAAVLVIEAGRWDEEDTLAFRVLSDAGVPVVLVVNKVDRLK 132

Query: 327 TKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K+ L+    +          H +S+   +GL+ L+  +  ++            + +  
Sbjct: 133 DKTALFPFLAQVSEGRTFAAVHPVSALKRKGLDALVGDLLKLVPEAEAMFGEDEITDRSQ 192

Query: 380 LYHLSQTVRYLEMASLNEK-----DCGLDIIAENLRLASVSLGKIT 420
            +   + VR   M  L E+        ++  AE+   A + +G + 
Sbjct: 193 RFLAGELVREQLMRQLGEELPYATTVEIERFAED--GALLRIGAVI 236


>gi|291519874|emb|CBK75095.1| iron-only hydrogenase maturation protein HydF [Butyrivibrio
           fibrisolvens 16/4]
          Length = 394

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 80/172 (46%), Gaps = 19/172 (11%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++    G+ +  G+     G  NAGKSS+ N L  +++++V+   GTT D +   +++  
Sbjct: 3   LNNTASGQRVHIGF----FGIRNAGKSSIVNKLTNQEISLVSAHKGTTTDPVKKAMEILP 58

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----EISFPKN-- 319
              V I DTAG  +  ++ E     RT+  ++  D+++++ +   K+    E  F KN  
Sbjct: 59  IGPVVIIDTAGFDDEGELGELRK-NRTYRILDEIDIVVMVLDAREKQLSTEEADFLKNVK 117

Query: 320 ---IDFIFIGTKSDLYSTYT----EEYDHLISSFTGEGLEELINKIKSILSN 364
              + +I I   +D  + +     E  + +    T + + ++   +  +L N
Sbjct: 118 ERKVPYIIIENHTDEEAAHDYPGLENENLIFVDATKDDMSQVKEALIKLLPN 169


>gi|295115512|emb|CBL36359.1| GTP-binding protein HflX [butyrate-producing bacterium SM4/1]
          Length = 417

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 91/236 (38%), Gaps = 20/236 (8%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
             + L+ +   I       ++ +V      E +  +     ++  H    +         
Sbjct: 143 LRNSLSRLGGGIGTRGPGEKKLEVDRRLIHERIGQLKSELENVKRHREVARQQRDRNCTV 202

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
              I+G++NAGKS+L N L    + +  D+   T D  T  L+L  G  + ++DT G   
Sbjct: 203 SAAIVGYTNAGKSTLLNYLTDAGI-LAQDMLFATLDPTTRTLELPSGQKILLTDTVGFIR 261

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGT 327
                  E  K T  E   +D+IL + ++++ +  +               +   I +  
Sbjct: 262 KLPHHLIEAFKSTLEEARYSDIILHVVDVSNPQMETQIHIVYETLRQLEITDKTVITVFN 321

Query: 328 KSD------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           K D      +   +  ++   IS+ TGEG+  L+  ++ IL ++   L    P  +
Sbjct: 322 KMDRLTGDVILRDFRSDFQVKISAKTGEGIPALLETLEGILRSRKVYLEKVFPYAQ 377


>gi|240122944|ref|ZP_04735900.1| GTP-binding protein Era [Neisseria gonorrhoeae PID332]
          Length = 307

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 75/213 (35%), Gaps = 30/213 (14%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +  +  R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 2   DIETFLAGERAADGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 60

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----------ENADLILLLKEINSK 311
              +       DT G +        + + +   E             A   + L + +  
Sbjct: 61  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVVVFVVEA---MRLTDADRV 117

Query: 312 KEISFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELI 355
                PK+   I +  K D                + + +       +S+  G  +  L+
Sbjct: 118 VLKQLPKHTPVILVINKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLL 177

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             +K  L       P  + + K   +   + VR
Sbjct: 178 ELLKPYLPESVPMYPEDMVTDKSARFLAMEIVR 210


>gi|308373491|ref|ZP_07432513.2| GTP-binding protein hflX [Mycobacterium tuberculosis SUMu005]
 gi|308374673|ref|ZP_07436931.2| GTP-binding protein hflX [Mycobacterium tuberculosis SUMu006]
 gi|308375498|ref|ZP_07444143.2| GTP-binding protein hflX [Mycobacterium tuberculosis SUMu007]
 gi|308337473|gb|EFP26324.1| GTP-binding protein hflX [Mycobacterium tuberculosis SUMu005]
 gi|308341145|gb|EFP29996.1| GTP-binding protein hflX [Mycobacterium tuberculosis SUMu006]
 gi|308346070|gb|EFP34921.1| GTP-binding protein hflX [Mycobacterium tuberculosis SUMu007]
          Length = 495

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 96/280 (34%), Gaps = 25/280 (8%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q    +  + G   S+  Q   +       +        + +      +E +  +  
Sbjct: 190 SLAQMEYMLPRLRGWGESMSRQAGGRAGGSGGGVGLRGPGETKIETDRRRIRERMAKLRR 249

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
               +       +      +   I I+G++NAGKSSL NAL    V +V D    T +  
Sbjct: 250 DIRAMKQVRDTQRSRRRHSDVPSIAIVGYTNAGKSSLLNALTGAGV-LVQDALFATLEPT 308

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           T   +  +G  V ++DT G          E  + T  EV +ADL++ + + +    ++  
Sbjct: 309 TRRAEFGDGRPVVLTDTVGFVRHLLTQLVEAFRSTLEEVVHADLLVHVVDGSDGHPLAQI 368

Query: 318 KN----------------IDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGLEEL 354
                                + +  K D+ S        +       +S+ TG+G++ L
Sbjct: 369 DAVRQVISEVIADHDGDPPPELLVVNKVDVASDLMLAKLRHGLPGAVFVSARTGDGIDAL 428

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
             ++  ++      +   IP  +  L         ++ A 
Sbjct: 429 RRRMAELVVPADTAVDVVIPYDRGDLVARVHADGRIQQAE 468


>gi|116787759|gb|ABK24631.1| unknown [Picea sitchensis]
          Length = 547

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 120/318 (37%), Gaps = 33/318 (10%)

Query: 115 RRAFENGKIDLLEAESLADLIS---SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
            RAF            + D+ +   +  E   ++++  M  +L  L   W          
Sbjct: 218 ERAFGREVRVCDRTALILDIFNQRAATREASLQVTLAQMEYQLPRLTRMWTHLERQAGGM 277

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           ++      ++ +V     ++ +  +      +  H  Q +          + ++G++NAG
Sbjct: 278 VKGM--GEKQIEVDKRILRDRIASLRKELESVRQHRRQYRDRRSSVPVPVVSLVGYTNAG 335

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIK 290
           KS+L N L+  DV +  D    T D  T  ++L +G    ++DT G  +          +
Sbjct: 336 KSTLLNRLSGADV-LAEDRLFATLDPTTRRMELPDGKECLLTDTVGFIQKLPTQLVASFR 394

Query: 291 RTFLEVENADLILLLKEIN---SKKEISFPKN---------IDFIFIGTKSDL---YSTY 335
            T  E+ ++ L++ + +I+   +K++    K          I  + +  K D      T 
Sbjct: 395 ATLEEIGDSSLLVHVVDISHPLAKQQTEAVKKVLAELDIQHIPMLTLWNKVDRTRDTDTI 454

Query: 336 TEEYD-----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK------RHLYHLS 384
            EE         IS+  G+GL+E    ++  L +    +  S+P  K       H   + 
Sbjct: 455 REEAGRTGDTICISALNGDGLQEFCFAVEQKLKDSMVWVEASVPYDKGELVSIIHRLGIV 514

Query: 385 QTVRYLEMASLNEKDCGL 402
           + V Y E  ++ +    L
Sbjct: 515 KQVEYSEEGTIIKAHVPL 532


>gi|17987156|ref|NP_539790.1| GTP-binding protein HFLX [Brucella melitensis bv. 1 str. 16M]
 gi|17982822|gb|AAL52054.1| gtp-binding protein hflx [Brucella melitensis bv. 1 str. 16M]
          Length = 505

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 99/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 181 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 237

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS LFN +    V +  D+ 
Sbjct: 238 KILRIKRELETVVRTRALHRQTRRKVPHPIVALVGYTNAGKSMLFNRMTGAQV-LAEDML 296

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 297 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 356

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 357 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAAGSEEGRPIP 416

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 417 VSAITGEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 454


>gi|254413822|ref|ZP_05027591.1| hypothetical protein MC7420_3938 [Microcoleus chthonoplastes PCC
           7420]
 gi|196179419|gb|EDX74414.1| hypothetical protein MC7420_3938 [Microcoleus chthonoplastes PCC
           7420]
          Length = 206

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 2/132 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKS LFNAL    V  V++ PGTT +V    + +      + DT G+   
Sbjct: 39  QVALVGTPNVGKSVLFNALTGTYVT-VSNYPGTTVEVSRGQMTVGDRPFAVVDTPGMYSL 97

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             I E+E + R  L  E  DL++ + +  +   +  P     I  G    L     +E +
Sbjct: 98  LPITEEEKVSRDLLLSEPVDLVIHVVDAKNLGRM-LPLTFQLIEAGLPVLLAVNMIDEAE 156

Query: 341 HLISSFTGEGLE 352
            L      + LE
Sbjct: 157 QLGIEIHRDHLE 168


>gi|15644215|ref|NP_229266.1| ribosome biogenesis GTP-binding protein YsxC [Thermotoga maritima
           MSB8]
 gi|13124246|sp|Q9X1H7|ENGB_THEMA RecName: Full=Probable GTP-binding protein EngB
 gi|4982031|gb|AAD36534.1|AE001797_14 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 195

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 26/170 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRE 279
           +  +G SN GKSSL NAL  + +A V+  PG TR +    ++ + Y V +     A + +
Sbjct: 26  VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSK 85

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSD- 330
            + ++ K  ++  F    +  ++ LL +     +      + + K  NI F  + TK D 
Sbjct: 86  KERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDK 145

Query: 331 ---------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                          ++S Y E      SS TGEG+ EL++ I ++L   
Sbjct: 146 VKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKEN 195


>gi|293611451|ref|ZP_06693746.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826235|gb|EFF84605.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 447

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 114/319 (35%), Gaps = 35/319 (10%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + T E + ++ +  +    + L   W       +  I         E       + + 
Sbjct: 114 LRARTHEGKLQVELAQLKHLSTRLIRGWSADFEQQKGGIGLR---GPGETQLETDRRLIR 170

Query: 194 NDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             I  LK+ +         G   R       I ++G++NAGKS+LFN LA  DV    D 
Sbjct: 171 VRITQLKDKLDKVQQTRMQGRAARQKAAIPTISLVGYTNAGKSTLFNILANSDV-YAADQ 229

Query: 251 PGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D     LD +G   V ++DT G          E  K T  E   A L+L + + +
Sbjct: 230 LFATLDPTLRRLDWDGIGTVVLADTVGFVRNLQHDLVESFKATLEETLEATLLLHVIDSS 289

Query: 310 SKKEISFPK-----------NIDFIFIGTKSDLYSTYTEEY--------DHLISSFTGEG 350
           S   +   +           +   + +  K DL     +             +S+ +G+G
Sbjct: 290 SHDMLDQIEAVEGVLKDIGADAPVLRVYNKIDLSGEEAKIIYAEPHVPDRVYVSAHSGQG 349

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDI-IAEN 408
           LE L   ++  L  + +K    +      L      +  +E    ++     +D+ IA +
Sbjct: 350 LELLQKAVQECLMGQIQKFSLVLKPAYGKLRTQLYALNVIESEHYDDAGLLHIDVKIAPH 409

Query: 409 -----LRLASVSLGKITGC 422
                +R A + L +I G 
Sbjct: 410 KLEKLIRQAKLPLDEILGE 428


>gi|294787528|ref|ZP_06752781.1| GTP-binding protein [Parascardovia denticolens F0305]
 gi|315226889|ref|ZP_07868677.1| GTP-binding protein [Parascardovia denticolens DSM 10105]
 gi|294484884|gb|EFG32519.1| GTP-binding protein [Parascardovia denticolens F0305]
 gi|315121021|gb|EFT84153.1| GTP-binding protein [Parascardovia denticolens DSM 10105]
          Length = 615

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 91/261 (34%), Gaps = 28/261 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+  I+      + K G   RN    + ++G++NAGKSSL N L   
Sbjct: 314 ELDRRIIRTRMARLRKQIAQMAPSREIKRGSRRRNALPTVAVVGYTNAGKSSLINRLTGS 373

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      E       DT G          E  K T  E  +A LI
Sbjct: 374 HELVENALFATLDTAVRQSETAENRRFMYVDTVGFVRRLPTQLIEAFKSTLEEAADASLI 433

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           + + + +                ++     I  + +  K D     T E         H 
Sbjct: 434 IHVVDASHPDPFAQIDAVNAVLSDVPGVAGIPSLMVFNKIDRIDAATLERLRNLAPEAHF 493

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TG+GLEEL   +++ L      +   +P     L    +   +++     E+   L
Sbjct: 494 VSAATGQGLEELKAAVEAGLPKPDVHVDALVPYTAGSLISQVREFGHIDQIDYEEEGIHL 553

Query: 403 -----DIIAENLRLASVSLGK 418
                D +A +L  AS  L  
Sbjct: 554 VADVDDRLAVHLIAASEDLAS 574


>gi|331004918|ref|ZP_08328332.1| GTP-binding protein Era [gamma proteobacterium IMCC1989]
 gi|330421268|gb|EGG95520.1| GTP-binding protein Era [gamma proteobacterium IMCC1989]
          Length = 299

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 22/195 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +  + ++I +  P TTR  L      E       DT G+ +  
Sbjct: 11  IAIVGRPNVGKSTLLNHILGQKLSITSRKPQTTRHKLLGIKTTEDTQFIYVDTPGLHQGQ 70

Query: 282 DIVEKEGIKRTF-LEVENADLILLLK-------EINSKKEISFPKNIDFIFIGTKSDLYS 333
                  + R     +++ D++L +        E  +  +         I +  K D   
Sbjct: 71  KKAINRYMNRAVTTAIQDVDVVLFMIEKLQWLPEDEAVAQRLAEIKSPVILVINKVDTID 130

Query: 334 TYTEEYDHLISSFTGEGLEELI----------NKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                  H+        ++E+I          ++++ I+  +  +  F     +      
Sbjct: 131 DKETLLPHMQKLLEQVNVQEVIPVSALNNQNLDRLEEIIRVRLPEDDFFYAEDQ----IT 186

Query: 384 SQTVRYLEMASLNEK 398
            ++ R+L    + EK
Sbjct: 187 DRSSRFLAAEIIREK 201


>gi|281411667|ref|YP_003345746.1| small GTP-binding protein [Thermotoga naphthophila RKU-10]
 gi|281372770|gb|ADA66332.1| small GTP-binding protein [Thermotoga naphthophila RKU-10]
          Length = 404

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 21/169 (12%)

Query: 219 GYKIVIL--GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTA 275
           G++  I+  G  N GKSS  N L  ++V+IV++  GTT D +   ++L     V + DT 
Sbjct: 7   GFRRYIVVAGRRNVGKSSFMNTLVGQNVSIVSEYAGTTTDPVYKSMELYPVGPVTLVDTP 66

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKS 329
           G+ +  ++     +++       AD  +L+ +       +    +     I F+ +  K 
Sbjct: 67  GLDDVGELGRLR-VEKARRVFYRADCGILVTDSEPTPYEDDVVNLFKEMEIPFVVVVNKI 125

Query: 330 DLYSTYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFK 367
           D+     EE   L            S+   +G +++   I  IL    +
Sbjct: 126 DVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGDEE 174


>gi|116789806|gb|ABK25394.1| unknown [Picea sitchensis]
          Length = 547

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 120/318 (37%), Gaps = 33/318 (10%)

Query: 115 RRAFENGKIDLLEAESLADLIS---SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
            RAF            + D+ +   +  E   ++++  M  +L  L   W          
Sbjct: 218 ERAFGREVRVCDRTALILDIFNQRAATREASLQVTLAQMEYQLPRLTRMWTHLERQAGGM 277

Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231
           ++      ++ +V     ++ +  +      +  H  Q +          + ++G++NAG
Sbjct: 278 VKGM--GEKQIEVDKRILRDRIASLRKELESVRQHRRQYRDRRSSVPVPVVSLVGYTNAG 335

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIK 290
           KS+L N L+  DV +  D    T D  T  ++L +G    ++DT G  +          +
Sbjct: 336 KSTLLNRLSGADV-LAEDRLFATLDPTTRRMELPDGKECLLTDTVGFIQKLPTQLVASFR 394

Query: 291 RTFLEVENADLILLLKEIN---SKKEISFPKN---------IDFIFIGTKSDL---YSTY 335
            T  E+ ++ L++ + +I+   +K++    K          I  + +  K D      T 
Sbjct: 395 ATLEEIGDSSLLVHVVDISHPLAKQQTEAVKKVLAELDIQHIPMLTLWNKVDRTRDTDTI 454

Query: 336 TEEYD-----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK------RHLYHLS 384
            EE         IS+  G+GL+E    ++  L +    +  S+P  K       H   + 
Sbjct: 455 REEAGRTGDTICISALNGDGLQEFCFAVEQKLKDSMVWVEASVPYDKGELVSIIHRLGIV 514

Query: 385 QTVRYLEMASLNEKDCGL 402
           + V Y E  ++ +    L
Sbjct: 515 KQVEYSEEGTIIKAHVPL 532


>gi|212633665|ref|YP_002310190.1| GTP-binding protein HflX [Shewanella piezotolerans WP3]
 gi|212555149|gb|ACJ27603.1| GTP-binding protein HflX [Shewanella piezotolerans WP3]
          Length = 431

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 68/322 (21%), Positives = 115/322 (35%), Gaps = 35/322 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTYEGKLQVELAQLRHMSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIR 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     Q +      +   + ++G++NAGKS+LFNAL   DV    D    T
Sbjct: 173 TINKRLAKVDKQRDQSRRARQRSDMSTVSLVGYTNAGKSTLFNALTASDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
            D     L+L    + ++DT G             K T  E   ADL+L + +   +   
Sbjct: 232 LDPTLRKLELPDGHIVLADTVGFIRHLPHDLVAAFKATLQETRQADLLLHVVDSADENMA 291

Query: 312 ----------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLE 352
                     KEI     I  + I  K DL        D+          +S+   +GLE
Sbjct: 292 DNFEQVQSVLKEID-ADEIPQLIICNKIDLLDEVKPRIDYDDEGKPIRVWVSAQQQKGLE 350

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL--- 409
            +   I  ++    K+L   IP+   H  +L Q  +   +      D G  +I+  L   
Sbjct: 351 LVQEAINDLVGKAVKELALQIPASAGH--YLGQFYKLDVIQQKEYDDLGNCMISVRLLEA 408

Query: 410 ---RLASVSLGKITGCVDVEQL 428
              RL   SLG+I     V+ +
Sbjct: 409 DWRRLVKQSLGEIE-TFIVDDV 429


>gi|328882360|emb|CCA55599.1| GTP-binding protein Era [Streptomyces venezuelae ATCC 10712]
          Length = 316

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 9/138 (6%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           ++ +  E +        +G  NAGKS+L NAL  + VAI ++ P TTR  +   +     
Sbjct: 6   ARNQETEAVHRAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEA 65

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPK 318
            + + DT G+ +   ++ +             D+I      + K         KE++  K
Sbjct: 66  QLILVDTPGLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKFIAKELAGIK 125

Query: 319 NIDFIFIGTKSDLYSTYT 336
               + I TK+DL  + T
Sbjct: 126 KTPKVAIITKTDLVDSKT 143


>gi|284925919|gb|ADC28271.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni IA3902]
          Length = 291

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKE----ISFPKNIDFIFIGTKSD 330
           G+ E+   + +  ++     + + D+IL +  + +S K+    +S    +  I    K D
Sbjct: 60  GLHESGATLNQLLVQSAIKSIGDCDVILFVASVFDSTKDYENFLSLNPQVPHIIALNKVD 119

Query: 331 LYSTYT 336
           L    T
Sbjct: 120 LTDNAT 125


>gi|38234020|ref|NP_939787.1| putative GTP-binding protein [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200282|emb|CAE49967.1| Putative GTP-binding protein [Corynebacterium diphtheriae]
          Length = 536

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 100/260 (38%), Gaps = 36/260 (13%)

Query: 186 NFSSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + +D+  L+ +I+      + K  +  ++   +I I G++NAGKSSL NA+   
Sbjct: 276 EADRRRLRSDMAKLRKEIAGMKTAREVKRSQRKQSTIPQIAIAGYTNAGKSSLINAMTGA 335

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +V D    T D  T   +L +G  V  +DT G          E  + T  EV +ADL
Sbjct: 336 GV-LVEDALFATLDPTTRRAELADGRAVVFTDTVGFVRHLPTQLVESFRSTLEEVVDADL 394

Query: 302 ILLLKEINSKKEISFPKNIDF----------------IFIGTKSDLYS-------TYTEE 338
           +L + + +    +   + ++                 I +  K D           +  +
Sbjct: 395 VLHVVDGSDPFPLKQIEAVNTVVSEIVRELKVDAPPEIIVVNKIDQADPLVLAELRHALD 454

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ------TVRYLEM 392
               +S+ T EG+ EL  +++  L+     +   +P  +  +           +  Y   
Sbjct: 455 DVVFVSAKTAEGIPELEMRVEQFLNTLDTHVRLLVPYTRGDIVSRLHSNGTVLSEEYEAE 514

Query: 393 ASLNEKDCGLDIIAE--NLR 410
            +L +      I AE   LR
Sbjct: 515 GTLIDVRLPAAIAAELGELR 534


>gi|289705005|ref|ZP_06501418.1| GTP-binding protein Era [Micrococcus luteus SK58]
 gi|289558264|gb|EFD51542.1| GTP-binding protein Era [Micrococcus luteus SK58]
          Length = 321

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 10/137 (7%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           ++  +   +  +  R+G+ + ++G  NAGKS+L NAL  + VAI +  P TTR  +   +
Sbjct: 1   MTDLVDPARAADGFRSGF-VSLVGRPNAGKSTLTNALVGEKVAITSSKPQTTRHTIRGIV 59

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---------KKE 313
             E + + + DT G+     ++ +         +   D + +    +           ++
Sbjct: 60  HREDFQLVLVDTPGLHRPRTLLGERLNDLVAETLNEVDAVGMCLPADEAIGPGDRFIAQQ 119

Query: 314 ISFPKNIDFIFIGTKSD 330
           +S+      + + TK+D
Sbjct: 120 LSYLHRTPVVAVVTKTD 136


>gi|167854943|ref|ZP_02477718.1| GTP-binding protein Era [Haemophilus parasuis 29755]
 gi|219870403|ref|YP_002474778.1| GTP-binding protein Era [Haemophilus parasuis SH0165]
 gi|254783657|sp|B8F3C8|ERA_HAEPS RecName: Full=GTPase Era
 gi|167853900|gb|EDS25139.1| GTP-binding protein Era [Haemophilus parasuis 29755]
 gi|219690607|gb|ACL31830.1| GTP-binding protein Era binding 16S rRNA and 30S ribosome
           [Haemophilus parasuis SH0165]
          Length = 300

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRILGIKTEGAYQEIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     + + D+++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNRAAASAIGDVDMVIFVVEGTKWTDDDEMVLNKLRSTKAPVILAINKVDNIK 130

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L   +  +    IS+  G+ +  L   ++  L       P    + +  
Sbjct: 131 EKEELLPHLTALSQKFPFKEIIPISAQRGKNVHILEKFVRESLKEGIHHYPEDYVTDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|78043216|ref|YP_358984.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995331|gb|ABB14230.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 414

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 103/264 (39%), Gaps = 20/264 (7%)

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
                   L+ +   I        + +V   + ++ + ++     +I  +  + K    +
Sbjct: 128 RITGLGRVLSRLGGGIGTRGPGETKLEVLRRTIRKRIAELRRELKEIEQN-RKVKRSRRL 186

Query: 217 RNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274
             G  IV ++G++NAGKS+L NAL    V +  D    T D     L L  G  + + DT
Sbjct: 187 EAGVPIVALVGYTNAGKSTLLNALTGAGV-LAEDKLFATLDPTVRKLTLPGGQKLLLIDT 245

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPK-------NIDFI 323
            G  E    + KE  K T   V  A+LIL + +       ++E    K        +  I
Sbjct: 246 VGFIENMPPLIKEAFKSTLEVVHEAELILHVVDGANPYREEQEAVVEKILTEMKVRVPVI 305

Query: 324 FIGTKSDLYST---YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            +  K DL      +  +    IS+ TG  +E L+  I+  L  +   +   +P      
Sbjct: 306 TVYNKVDLLPEPVLFLGKRAVAISARTGYNMELLLKLIEENLFWQEVTVKAVLPFA--QA 363

Query: 381 YHLSQTVRYLEMASLNEKDCGLDI 404
           + +      L++ +L     G+++
Sbjct: 364 FKIGDLKENLKLINLEYLPEGIEV 387


>gi|325263528|ref|ZP_08130262.1| GTP-binding protein HflX [Clostridium sp. D5]
 gi|324031237|gb|EGB92518.1| GTP-binding protein HflX [Clostridium sp. D5]
          Length = 413

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 105/265 (39%), Gaps = 23/265 (8%)

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           A  +SSE ++Q  L+        +S      D L+ +   I       ++ ++     +E
Sbjct: 116 ARAVSSEGKIQVELAQLKYR---ASRLVGLRDSLSRLGGGIGTRGPGEKKLEMDRRLIRE 172

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            ++ +     ++  H    +      +     ++G+++AGKSS+ NAL    + +   + 
Sbjct: 173 RISKLKKELREVEQHRELIRTQRKASHKKIAALVGYTSAGKSSIENALTGAGI-LADAML 231

Query: 252 GTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            +T D  T  L+L+    + ++DT G          E  K T  E + AD+I+ + + ++
Sbjct: 232 FSTLDTTTRVLELDKKQEILLTDTVGFIRKLPHHLIEAFKSTLEEAKYADIIIHVVDASN 291

Query: 311 KKEISFP------------KNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLE 352
            +  S              +    I +  K D          +  EY  L S+ TG+GLE
Sbjct: 292 PQMDSQMYVVYETLRQLGVEGKPVITLFNKQDKLEEPGSFRDFQAEYSILTSAKTGQGLE 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK 377
           EL   +  I+ +    +    P  +
Sbjct: 352 ELKTALLEIIRSGQIYIEKMYPFEE 376


>gi|68171944|ref|ZP_00545257.1| Small GTP-binding protein domain:GTP-binding protein Era [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|67998634|gb|EAM85374.1| Small GTP-binding protein domain:GTP-binding protein Era [Ehrlichia
           chaffeensis str. Sapulpa]
          Length = 296

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 22/211 (10%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G +NAGKS+L N L  + VA VT    TTR  +   L+ E   +   DT GI     
Sbjct: 12  AIVGTTNAGKSTLINMLVGQKVAAVTPKVQTTRVRMHAVLNNENVQLIFIDTPGIFSPKT 71

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSDLY-- 332
            +EK  +K  ++ ++  + ++LL ++ +      ++ IS  K  NI+ I +  K D    
Sbjct: 72  KLEKFIVKHAWMSLKGIENVILLLDVKNYLNKHIERIISRIKQSNINAILVVNKIDTVPT 131

Query: 333 STYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           S+  +  +H+            S+    GL  L++ +  I  N     P    S     +
Sbjct: 132 SSVDKAIEHMYSLHSFSKTFTISALHDIGLSRLVDYLCEISPNGPWLYPEDQISDAPLKF 191

Query: 382 HLSQTVRYLEMASL-NEKDCGLDIIAENLRL 411
            +++  R     SL +E    L ++ E L  
Sbjct: 192 FMAEITREKLFLSLHHELPYSLSVVTEALEE 222


>gi|319441573|ref|ZP_07990729.1| putative GTP-binding protein [Corynebacterium variabile DSM 44702]
          Length = 483

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 90/219 (41%), Gaps = 28/219 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + + ND+  L+ +I+       +    R+     ++ I G++NAGKSSL NAL   
Sbjct: 222 EADRQRIRNDMAKLRREITGMKKARDIKRRQRDSSAVAQVAIAGYTNAGKSSLLNALTGA 281

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +V D    T D  T   +L +G  V  SDT G          E  + T  EV  AD+
Sbjct: 282 GV-LVEDALFATLDPTTRRAELADGRTVVFSDTVGFIRFLPTQLVEAFRSTLEEVMAADV 340

Query: 302 ILLLKEINSK---KEISFPKN-------------IDFIFIGTKSDLYSTY-------TEE 338
           +L + + +     ++I+                    I +  K D              +
Sbjct: 341 VLHVVDGSDPFPMEQIAAVNKVIGEIAEETGEDAPPEILVVNKVDAADPLVLADLRNRLD 400

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
               +S+ TGEG+ EL ++++  L++   ++  S+P  +
Sbjct: 401 DVIFVSASTGEGIAELESRLELFLNSMDARVTLSVPFSR 439


>gi|254503598|ref|ZP_05115749.1| GTP-binding protein Era [Labrenzia alexandrii DFL-11]
 gi|222439669|gb|EEE46348.1| GTP-binding protein Era [Labrenzia alexandrii DFL-11]
          Length = 337

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 79/198 (39%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L    V+IVT    TTR ++          +   DT GI +  
Sbjct: 48  VALIGAPNAGKSTLINQLVGTKVSIVTHKVQTTRSIVRGVAMHGTAQLVFIDTPGIFKPK 107

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF--------IFIGTKSDLYS 333
             +++  +   +    +AD+I LL +     +    + +          + I  K+D+ +
Sbjct: 108 RRLDRAMVDTAWGGARDADVIALLIDARKGIDEEVEQILKRLKGQSAPKVLILNKTDVAN 167

Query: 334 TYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                            E   ++S+ TG+G +++++   S + +     P   PS     
Sbjct: 168 REKLLKLAQKANEYLEFEETFMVSALTGDGTQQILDYFASKMPDGPWLYPEDQPSDLPLR 227

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+++
Sbjct: 228 ILAAEITREKLFERLHQE 245


>gi|325663508|ref|ZP_08151918.1| GTP-binding protein HflX [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470407|gb|EGC73638.1| GTP-binding protein HflX [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 417

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 111/295 (37%), Gaps = 35/295 (11%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           +S  E + ++ +  +    S L G     L+ +   I       ++ ++     K  +  
Sbjct: 118 ASTNEGKIQVELAQLKYRQSRLVG-LGKSLSRLGGGIGTRGPGEKKLEMDRRLIKGRIAQ 176

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +     D+  H    +      +   I I+G++NAGKS+L N L    V +  D    T 
Sbjct: 177 LNRELKDVKRHREVTREQRSRNHIPVIAIVGYTNAGKSTLLNRLTGASV-LEEDKLFATL 235

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D  T  L L  G  V ++DT G          E  K T  E + AD+IL + ++++ +  
Sbjct: 236 DPTTRGLKLPSGQEVLLTDTVGFIRKLPHHLIEAFKSTLEEAKYADMILHVVDVSNPQMD 295

Query: 315 SFP------------KNIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEGLEELIN 356
                          K+   I    K D      +   +   +   IS+ TG+GL+ L +
Sbjct: 296 EQMYTVYETLQNLDVKDKVVITAFNKQDRLTEVPIIRDFKANHIVNISARTGQGLDTLQS 355

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            I+ IL              +R +  +S+T  Y +   +       +++ E  R 
Sbjct: 356 VIEQIL-------------RERKIE-ISRTYSYADAGKIQLIRKYGELLEEEYRE 396


>gi|257899220|ref|ZP_05678873.1| GTP-binding protein [Enterococcus faecium Com15]
 gi|293570366|ref|ZP_06681423.1| GTP-binding proten HflX [Enterococcus faecium E980]
 gi|257837132|gb|EEV62206.1| GTP-binding protein [Enterococcus faecium Com15]
 gi|291609544|gb|EFF38809.1| GTP-binding proten HflX [Enterococcus faecium E980]
          Length = 409

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 112/284 (39%), Gaps = 21/284 (7%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L  L GQ    L+ +   I        + +      +  +
Sbjct: 109 MRARSKEGKLQVELAQLEYLLPRLVGQ-GKTLSRLGGGIGTRGPGETKLETDRRHIRNKI 167

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             +     ++ +H  + +        ++I ++G++NAGKS++ N L + D     D    
Sbjct: 168 FAVKKELKEVEAHRERNRQKRKNSEIFQIGLIGYTNAGKSTILNLLTQAD-TYSKDQLFA 226

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D LT      EG+ + ++DT G  +       +    T  E +N DL+L + + +S  
Sbjct: 227 TLDPLTKRWRFAEGFEITVTDTVGFIQDLPTQLIDAFHSTLEESQNMDLLLHVVDASSPD 286

Query: 313 EISFP------------KNIDFIFIGTKSDLYS----TYTEEYDHLISSFTGEGLEELIN 356
            I               K +  + +  K+D       T T   + LIS+ T EG   LI 
Sbjct: 287 RILQEQTVLKLMDELNMKEMPILTVYNKADQIDPAMFTPTLFPNVLISAQTKEGKTALIE 346

Query: 357 KIKSILSNKFKKLPFSIPSHKRH-LYHLSQTVRYLEMASLNEKD 399
            IK  L         S+PS++   L  L +    L+ A + E +
Sbjct: 347 AIKRQLMELMTPYTLSVPSNEGQKLSELRRQTMVLDEAYMEESN 390


>gi|227550374|ref|ZP_03980423.1| HflX subfamily GTP-binding protein [Enterococcus faecium TX1330]
 gi|257888407|ref|ZP_05668060.1| GTP-binding protein [Enterococcus faecium 1,141,733]
 gi|257897219|ref|ZP_05676872.1| GTP-binding protein [Enterococcus faecium Com12]
 gi|293377991|ref|ZP_06624169.1| GTP-binding protein HflX [Enterococcus faecium PC4.1]
 gi|227180513|gb|EEI61485.1| HflX subfamily GTP-binding protein [Enterococcus faecium TX1330]
 gi|257824461|gb|EEV51393.1| GTP-binding protein [Enterococcus faecium 1,141,733]
 gi|257833784|gb|EEV60205.1| GTP-binding protein [Enterococcus faecium Com12]
 gi|292643356|gb|EFF61488.1| GTP-binding protein HflX [Enterococcus faecium PC4.1]
          Length = 409

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 112/284 (39%), Gaps = 21/284 (7%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L  L GQ    L+ +   I        + +      +  +
Sbjct: 109 MRARSKEGKLQVELAQLEYLLPRLVGQ-GKTLSRLGGGIGTRGPGETKLETDRRHIRNKI 167

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             +     ++ +H  + +        ++I ++G++NAGKS++ N L + D     D    
Sbjct: 168 FAVKKELKEVEAHRERNRQKRKNSEIFQIGLIGYTNAGKSTILNLLTQAD-TYSKDQLFA 226

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D LT      EG+ + ++DT G  +       +    T  E +N DL+L + + +S  
Sbjct: 227 TLDPLTKRWRFAEGFEITVTDTVGFIQDLPTQLIDAFHSTLEESQNMDLLLHVVDASSPD 286

Query: 313 EISFP------------KNIDFIFIGTKSDLYS----TYTEEYDHLISSFTGEGLEELIN 356
            I               K +  + +  K+D       T T   + LIS+ T EG   LI 
Sbjct: 287 RILQEQTVLKLMDELNMKEMPILTVYNKADQIDPAMFTPTLFPNVLISAQTKEGKTALIE 346

Query: 357 KIKSILSNKFKKLPFSIPSHKRH-LYHLSQTVRYLEMASLNEKD 399
            IK  L         S+PS++   L  L +    L+ A + E +
Sbjct: 347 AIKRQLMELMTPYTLSVPSNEGQKLSELRRQTMVLDEAYMEESN 390


>gi|229493118|ref|ZP_04386910.1| GTP-binding protein Era [Rhodococcus erythropolis SK121]
 gi|229319849|gb|EEN85678.1| GTP-binding protein Era [Rhodococcus erythropolis SK121]
          Length = 305

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 26/217 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    +AI +  P TTR  +   +  E   + + DT G
Sbjct: 7   RSGF-VCFVGRPNTGKSTLTNALVGSKIAITSSRPQTTRHTIRGIVHREHAQLILVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           + +   ++ +             D+I L    +           ++          + I 
Sbjct: 66  LHKPRTLLGQRLNDLVRDTYSEVDVICLCIPADEAIGPGDRWIVQQVRQMAPKTKLVGIV 125

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D  S                 E     +S+ +GE +E L++ +  ++       P  
Sbjct: 126 TKIDKVSRDAVGKQLLALSTLLGPESEVVPVSAKSGEQVEILVDVLAGLMDEGPAFYPDG 185

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAEN 408
             + +     +++ +R   +  L E+    L ++ E 
Sbjct: 186 ELTDEPEEVLMAELIREAALEGLGEELPHSLAVVIEE 222


>gi|300741536|ref|ZP_07071557.1| GTP-binding protein Era [Rothia dentocariosa M567]
 gi|311113629|ref|YP_003984851.1| GTP-binding protein Era [Rothia dentocariosa ATCC 17931]
 gi|300380721|gb|EFJ77283.1| GTP-binding protein Era [Rothia dentocariosa M567]
 gi|310945123|gb|ADP41417.1| GTP-binding protein Era [Rothia dentocariosa ATCC 17931]
          Length = 372

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 10/132 (7%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +Q    E  R G+ + ++G  NAGKS+L NAL  + VAI +  P TTR  +   +  + Y
Sbjct: 9   AQPAFPEHYRAGF-VSLVGRPNAGKSTLTNALVGQKVAITSSRPQTTRHTIRGIVHRDDY 67

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPK 318
            + + DT GI     ++ +         +   D++      N K          ++    
Sbjct: 68  QLILVDTPGIHRPRTLLGERLNDLVAGTLSQVDVLGFCIPANEKIGPGDRYIASQLVASS 127

Query: 319 NIDFIFIGTKSD 330
           N   + I TKSD
Sbjct: 128 NKPVVAIVTKSD 139


>gi|260459484|ref|ZP_05807739.1| GTP-binding proten HflX [Mesorhizobium opportunistum WSM2075]
 gi|259035038|gb|EEW36294.1| GTP-binding proten HflX [Mesorhizobium opportunistum WSM2075]
          Length = 468

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 89/222 (40%), Gaps = 37/222 (16%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDV 244
             +++   I+ LK+++ +      L    R       + I+G++NAGKS+LFN L   DV
Sbjct: 196 DRRQLQEKIIKLKHELETVRRTRDLHRAKRKKVPFPVVAIVGYTNAGKSTLFNRLTGADV 255

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +  D+   T D     + L  G  + +SDT G             + T  EV  ADL++
Sbjct: 256 -LAQDMLFATLDPTLRRVRLPHGTPIILSDTVGFISDLPTHLIAAFRATLEEVVEADLVI 314

Query: 304 LLKEINSKKEISFPKNIDFIF---------------IGTKSDLYSTYT------------ 336
            L++I+     +  ++++ I                +  K D                  
Sbjct: 315 HLRDISDPDTAAQAEDVERILADLGVDAGDAKRVIEVWNKIDQLDEGNRSRLLAPDMAKG 374

Query: 337 -----EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                +     +S+ TGEG++ L   I++ ++ + + L  +I
Sbjct: 375 GAAGSKGPPIAVSAVTGEGIDALKAIIETRMAGELEDLTVTI 416


>gi|291456693|ref|ZP_06596083.1| GTP-binding protein Era [Bifidobacterium breve DSM 20213]
 gi|291381970|gb|EFE89488.1| GTP-binding protein Era [Bifidobacterium breve DSM 20213]
          Length = 335

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 6/186 (3%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              +     R+G+ + ++G  N GKS+L NAL  K +AI +  P TTR  +   L  +  
Sbjct: 17  ESVRQEVPYRSGF-VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTTDNA 75

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDFIF 324
            + + DT GI     ++ +         + + D++  L   +      +      +   F
Sbjct: 76  QLVLVDTPGIHRPRTLLGQRLNDVVEESLSDVDVVAFLLPADQEIGPGDKRILSRLRTDF 135

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
              + D    +      +++     G ++LINK+  I  N+F      +P       +L+
Sbjct: 136 ATKREDGSFAWRIPLIAIVTKIDELGRQQLINKLIEI--NEFADFADIVPVSALKHDNLA 193

Query: 385 QTVRYL 390
           +    L
Sbjct: 194 EVRNVL 199


>gi|86151835|ref|ZP_01070049.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86153468|ref|ZP_01071672.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121613147|ref|YP_001000361.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 81-176]
 gi|189037258|sp|A1VZ20|ERA_CAMJJ RecName: Full=GTPase Era
 gi|85841464|gb|EAQ58712.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85843194|gb|EAQ60405.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249445|gb|EAQ72405.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 291

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKE----ISFPKNIDFIFIGTKSD 330
           G+ E+   + +  ++     + + D+IL +  + +S K+    +S    +  I    K D
Sbjct: 60  GLHESGATLNQLLVQSAIKSIGDCDVILFVASVFDSTKDYENFLSLNPQVPHIIALNKVD 119

Query: 331 LYSTYT 336
           L    T
Sbjct: 120 LTDNAT 125


>gi|254839192|pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
           Methanococcus Jannaschii
 gi|254839193|pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
           Methanococcus Jannaschii
          Length = 165

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 19/157 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS++FNAL  ++V I  + PG T +    + +  G   K+ D  G+  
Sbjct: 4   YEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                  E I R ++  E  DL++ + +  + +              + +    K DL  
Sbjct: 63  LTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAK 122

Query: 334 TYTEEYDHLI------------SSFTGEGLEELINKI 358
           +   E D               S+    G+EEL   I
Sbjct: 123 SLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAI 159


>gi|307720794|ref|YP_003891934.1| GTP-binding protein Era [Sulfurimonas autotrophica DSM 16294]
 gi|306978887|gb|ADN08922.1| GTP-binding protein Era [Sulfurimonas autotrophica DSM 16294]
          Length = 294

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 6/140 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N+L  + +A+V+     TR      +  E   +   DT G+ E +
Sbjct: 7   VSLIGRPNAGKSTLMNSLLGEKIAMVSQKANATRKRSNAIVMHENAQIIFVDTPGLHEKE 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNI-DFIFIGTKSDLYSTY 335
            ++ +  +      + + DLI+ L  +    E     +         I + +K D  S  
Sbjct: 67  KMLNQFMLDEALKAMGDCDLIVYLAPVTDSTEHYEKFLQINNGRVKHIIVLSKIDQVSQE 126

Query: 336 TEEYDHLISSFTGEGLEELI 355
                    +   +  E LI
Sbjct: 127 KLFKAIGSYNKYADHFEALI 146


>gi|56962534|ref|YP_174260.1| GTPase [Bacillus clausii KSM-K16]
 gi|56908772|dbj|BAD63299.1| GTPase [Bacillus clausii KSM-K16]
          Length = 420

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 103/285 (36%), Gaps = 21/285 (7%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          L          L+          +    E       +++   
Sbjct: 112 RAKTKEAQLQVEMARLRYLLPRLVGMRASLSRQGGSGTGLANRGAGETKLELDRRKIEAR 171

Query: 196 ILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAK---KDVAIVTD 249
           I  L+ D+   + + +L    R       + ++G++NAGKSSL NA+     +      D
Sbjct: 172 IHALEKDLEEIVKRRELQRKRRKKQALPVVALVGYTNAGKSSLMNAMLDNAEEKRVFEKD 231

Query: 250 IPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           +   T D     ++L+  + V ++DT G          +  + T  E   ADL+L + + 
Sbjct: 232 MLFATLDTSVRKVELDKNHSVLLADTVGFVSKLPTHLVKAFRSTLEEAREADLLLHVVDY 291

Query: 309 NSKKEISFPK-----------NIDFIFIGTKSD-LYSTYTEEY--DHLISSFTGEGLEEL 354
           ++++     K           +   I++  K D L   + + +  +  IS+ T +GL+ L
Sbjct: 292 SNERHREMAKTTNETLQAMEIDRPMIYVYNKMDRLKEAFPQAHGDELFISAKTKQGLDLL 351

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             KI S +    +K  F +P              ++      E  
Sbjct: 352 AQKIASYVFQDLEKHLFIVPYRDGEAAAYLNNHAHVHTQRAEEDG 396


>gi|330720075|gb|EGG98493.1| GTP-binding protein EngA [gamma proteobacterium IMCC2047]
          Length = 272

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 27/161 (16%)

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLE 295
           +  +D  +V D PGTTRD + I  +  G    + DTAG+R   ++    EK  I +T   
Sbjct: 1   MLGEDRVVVYDQPGTTRDSVYIPYERHGKPYTLIDTAGVRRRKNVKETVEKFSIIKTLQA 60

Query: 296 VENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTYTEE--------- 338
           + +A++++ + +       +++     +       +    K D      +          
Sbjct: 61  ISDANVVVCVFDAREGVVDQDLHMLGYALDAGRALVIAVNKWDGMDADDKRKVKQDLERR 120

Query: 339 -------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                    H IS+  G  + +L   I    ++   +   +
Sbjct: 121 LDFVGYAKIHFISALHGTAVGDLYGSIDKAFASATTRWSTN 161


>gi|331087033|ref|ZP_08336108.1| GTP-binding protein HflX [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409483|gb|EGG88926.1| GTP-binding protein HflX [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 417

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 112/295 (37%), Gaps = 35/295 (11%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           +S  E + ++ +  +    S L G     L+ +   I       ++ ++     K  +  
Sbjct: 118 ASTNEGKIQVELAQLKYRQSRLVG-LGKSLSRLGGGIGTRGPGEKKLEMDRRLIKGRIAQ 176

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +     D+  H    +      +   I I+G++NAGKS+L N L    V +  D    T 
Sbjct: 177 LNRELKDVKRHREVTREQRSRNHIPVIAIVGYTNAGKSTLLNRLTGASV-LEEDKLFATL 235

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D  T  L L  G  V ++DT G          E  K T  E + AD+IL + ++++ +  
Sbjct: 236 DPTTRGLKLPSGQEVLLTDTVGFIRKLPHHLIEAFKSTLEEAKYADMILHVVDVSNPQMD 295

Query: 315 SFP------------KNIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEGLEELIN 356
                          K+   I    K D      +   +  ++   IS+ TG+GL+ L +
Sbjct: 296 EQMYTVYETLQNLDVKDKVVITAFNKQDRLTEVPIIRDFKADHIANISARTGQGLDALQS 355

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            I+ IL              +R +  +S+T  Y +   +       +++ E  R 
Sbjct: 356 VIEQIL-------------RERKIE-ISRTYSYADAGKIQLIRKYGELLEEEYRE 396


>gi|220927100|ref|YP_002502402.1| GTP-binding protein Era [Methylobacterium nodulans ORS 2060]
 gi|219951707|gb|ACL62099.1| GTP-binding protein Era [Methylobacterium nodulans ORS 2060]
          Length = 320

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 77/193 (39%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N+L    V+IV+    TTR ++          +   DT G
Sbjct: 26  RAGF-VALIGVPNAGKSTLLNSLVGSKVSIVSRKVQTTRALVRGIAMEGSAQIVFVDTPG 84

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTK 328
           I      +++  +   +    +AD + LL +    ++++ +    +        I +  K
Sbjct: 85  IFAPKRRLDRAMVTSAWSGAADADAVCLLIDARKGVDAEVDALLDRLPELRRPKILVLNK 144

Query: 329 SD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D             L +    ++  ++S+ TG+G+ +L   +  ++       P    S
Sbjct: 145 IDVIARERLLELAASLNARLPFDHTFMVSALTGDGVADLRRVLAGLMPPGPWLYPEDQVS 204

Query: 376 HKRHLYHLSQTVR 388
                   ++  R
Sbjct: 205 DAPLRMLAAEITR 217


>gi|227488410|ref|ZP_03918726.1| GTP-binding protein Era [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091624|gb|EEI26936.1| GTP-binding protein Era [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 308

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 84/228 (36%), Gaps = 33/228 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  + P TTR  +   +  +   V + D
Sbjct: 13  EGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITANQPETTRHPIRGIVHRDDAQVIVVD 71

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFI 323
           T G+     ++ +   ++      + D+I L    + K             +       I
Sbjct: 72  TPGLHRPRTLLGERLNEQVKETYADVDVIALTIPADEKIGPGDRWILDAVRNVAPKTTLI 131

Query: 324 FIGTKSD-------------LYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFKKL 369
            + TK D             L+     E +    S+   E L+ L + I   L    K  
Sbjct: 132 GVVTKIDKVGRDQVMVQLQALHELLGGECEVVPCSAVKQEQLDVLTDVIVDKLPEGPKFY 191

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI---IAENLRLASV 414
           P +  +       +++ +R  E A    KD   ++   +A  +     
Sbjct: 192 PDTHLTDDDMETRMAELIR--EAALTGLKD---ELPHSVAVEIDEVLE 234


>gi|49475521|ref|YP_033562.1| GTP-binding protein hflX [Bartonella henselae str. Houston-1]
 gi|49238327|emb|CAF27551.1| GTP-binding protein hflX [Bartonella henselae str. Houston-1]
          Length = 447

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 83/221 (37%), Gaps = 29/221 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + +   I+ ++ ++   I    L    R   +   + ++G++N GKS+LFN L+  
Sbjct: 181 EADRRLLQEKIIRIRRELEKVIKTRALHRAKRKKTSHPIVALVGYTNTGKSTLFNRLSGA 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V     +  T    L   +   G  + +SDT G             + T  EV  ADLI
Sbjct: 241 NVLAKDMLFATLDPTLRKVVLPHGKTILLSDTVGFISHLPTHLIAAFRATLEEVVEADLI 300

Query: 303 LLLKEIN---------------SKKEISFPKNIDFIFIGTKSDLYSTYT----------- 336
           L +++++               +   I        I +  K D+   +            
Sbjct: 301 LHVRDMSDLDHRAHGQDVLEVLADLGIDIDDTEHIIEVWNKIDILDEHALNVLQTSARTR 360

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                ++S+   +GL++L+  I+  +  + + +   +  H+
Sbjct: 361 LNPAVMVSALMSDGLDQLLTAIEKRVFGEMQSIECLLRPHE 401


>gi|226307218|ref|YP_002767178.1| GTP-binding protein Era [Rhodococcus erythropolis PR4]
 gi|226186335|dbj|BAH34439.1| probable GTP-binding protein Era [Rhodococcus erythropolis PR4]
          Length = 305

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 26/217 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    +AI +  P TTR  +   +  E   + + DT G
Sbjct: 7   RSGF-VCFVGRPNTGKSTLTNALVGSKIAITSSRPQTTRHTIRGIVHREHAQLILVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           + +   ++ +             D+I L    +           ++          + I 
Sbjct: 66  LHKPRTLLGQRLNDLVRDTYSEVDVICLCIPADEAIGPGDRWIVQQIRQMAPKTKLVGIV 125

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D  S                 E     +S+ +GE +E L++ +  ++       P  
Sbjct: 126 TKIDKVSRDAVGKQLLALSTVLGPESEVVPVSAKSGEQVEILVDVLAGLMDEGPAFYPDG 185

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAEN 408
             + +     +++ +R   +  L E+    L ++ E 
Sbjct: 186 ELTDEPEEVLMAELIREAALEGLGEELPHSLAVVIEE 222


>gi|182435517|ref|YP_001823236.1| putative ATP/GTP-binding protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464033|dbj|BAG18553.1| putative ATP/GTP-binding protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 506

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 104/294 (35%), Gaps = 25/294 (8%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q +  +  + G   SL  Q     +     +        + +      +E +  +  
Sbjct: 204 SLAQMQYMLPRLRGWGQSLSRQMGGGGSSGGGGMATRGPGETKIETDRRRIREKMAKMRR 263

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
              ++ +     +          + I G++NAGKSSL N L    V +   +  T    +
Sbjct: 264 EIAEMKTGREIKRQERKRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 323

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEIS 315
                  G +  ++DT G          E  + T  EV  +DLIL + + +    +++++
Sbjct: 324 RRAETPSGRVYTLADTVGFVRHLPHHLVEAFRSTMEEVGESDLILHVVDGSHPVPEEQLA 383

Query: 316 FPK---------NIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGEGLEELINKIK 359
             +         ++  I +  K+D             E++   +S+ TG G++EL+  I 
Sbjct: 384 AVREVIRDVGAVDVREIVVINKADAADPLVLQRLLRNEKHAIAVSARTGAGIDELLALID 443

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQT------VRYLEMASLNEKDCGLDIIAE 407
           + L     ++   +P  +  L              +    +L +     ++ AE
Sbjct: 444 TELPRPSVEIEVLVPYIQGALVSRVHAEGEVLSEEHTAEGTLLKAQVHEELAAE 497


>gi|227543022|ref|ZP_03973071.1| GTP-binding protein Era [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227181244|gb|EEI62216.1| GTP-binding protein Era [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 308

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 84/228 (36%), Gaps = 33/228 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  + P TTR  +   +  +   V + D
Sbjct: 13  EGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITANQPETTRHPIRGIVHRDDAQVIVVD 71

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFI 323
           T G+     ++ +   ++      + D+I L    + K             +       I
Sbjct: 72  TPGLHRPRTLLGERLNEQVKETYADVDVIALTIPADEKIGPGDRWILDAVRNVAPKTTLI 131

Query: 324 FIGTKSD-------------LYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFKKL 369
            + TK D             L+     E +    S+   E L+ L + I   L    K  
Sbjct: 132 GVVTKIDKVGRDQVMVQLQALHELLGGECEVVPCSAVKQEQLDVLTDVIVDKLPEGPKFY 191

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI---IAENLRLASV 414
           P +  +       +++ +R  E A    KD   ++   +A  +     
Sbjct: 192 PDTHLTDDDMETRMAELIR--EAALTGLKD---ELPHSVAVEIDEVLE 234


>gi|325129783|gb|EGC52591.1| GTP-binding protein Era [Neisseria meningitidis OX99.30304]
          Length = 307

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 76/219 (34%), Gaps = 42/219 (19%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +  +  R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 2   DIETFLAGERAADGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 60

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----------------ENADLILLL 305
              +       DT G +        + + +   E                  +AD ++L 
Sbjct: 61  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVL- 119

Query: 306 KEINSKKEISFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGE 349
                      PK+   I +  K D                + + +       +S+  G 
Sbjct: 120 --------KQLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGL 171

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            +  L+  +K  L       P  + + K   +   + VR
Sbjct: 172 RIANLLELLKPYLPESVPMYPEDMVTDKSARFLAMEIVR 210


>gi|257440899|ref|ZP_05616654.1| GTP-binding protein HflX [Faecalibacterium prausnitzii A2-165]
 gi|257196679|gb|EEU94963.1| GTP-binding protein HflX [Faecalibacterium prausnitzii A2-165]
          Length = 421

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 92/226 (40%), Gaps = 17/226 (7%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             ++     + +          + ++G++N GKSSL NAL    VA   D+   T D  +
Sbjct: 189 LAEMEKRRGESRKARAKTGMPVVSLVGYTNVGKSSLMNALCGPSVAE-ADMLFATLDPTS 247

Query: 260 IDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP 317
             L L  G  V + DT G          E  K T  E   +D+I+ + +  + ++E    
Sbjct: 248 RKLVLPSGMAVLLVDTVGFVSRLPHNLVEAFKSTLEEAAWSDVIVRVADAGDDQREEQLA 307

Query: 318 -----------KNIDFIFIGTKSDLYSTYTEEYDH-LISSFTGEGLEELINKIKSILSNK 365
                       +I  + +  K D  +    + D  L S+ TG GL+ L+ K+  +LS++
Sbjct: 308 VTDEVLDGLDCADIPRLTVYNKCDKPNALNFDPDILLTSAKTGYGLDALLKKLDELLSDR 367

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD-II-AENL 409
              +   +P  K  L    +    +++    E    L+ I+  E+L
Sbjct: 368 VHTIRVLLPYDKLGLAAPMRERGSVQVEEYREDGLYLEGIVKTEDL 413


>gi|254839190|pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
           Methanococcus Jannaschii
 gi|254839191|pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
           Methanococcus Jannaschii
          Length = 166

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 19/157 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS++FNAL  ++V I  + PG T +    + +  G   K+ D  G+  
Sbjct: 4   YEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                  E I R ++  E  DL++ + +  + +              + +    K DL  
Sbjct: 63  LTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAK 122

Query: 334 TYTEEYDHLI------------SSFTGEGLEELINKI 358
           +   E D               S+    G+EEL   I
Sbjct: 123 SLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAI 159


>gi|260578882|ref|ZP_05846787.1| GTP-binding protein [Corynebacterium jeikeium ATCC 43734]
 gi|258602972|gb|EEW16244.1| GTP-binding protein [Corynebacterium jeikeium ATCC 43734]
          Length = 484

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 28/219 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + + +D+  L+ +I++  +  ++    R+     +I I G++NAGKSSL NAL   
Sbjct: 223 EADRRRLRSDMAKLRKEIAAMKTSREVKRERRDASAIPQIAIAGYTNAGKSSLINALTGA 282

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +V D    T D  T   +L +G  V  SDT G          E  + T  EV  AD+
Sbjct: 283 GV-LVEDALFATLDPTTRRANLADGRAVVFSDTVGFVRHLPTQLVEAFRSTLEEVLAADV 341

Query: 302 ILLLKEINSKKEISFPKNIDF----------------IFIGTKSDLYSTY-TEEYDH--- 341
           +L + + +    +   K ++                 I +  K D        E  H   
Sbjct: 342 VLHVVDGSDPFPLEQIKAVNTVIGGIVEESGQEAPPEILVINKIDAADPLVLAELRHRIP 401

Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
               +S+ TGEG+ EL  +++  L++    +   +P  +
Sbjct: 402 DAVYVSAKTGEGIPELEAQLELFLNSLDTHVTLHVPFDR 440


>gi|254468693|ref|ZP_05082099.1| GTP-binding protein Era [beta proteobacterium KB13]
 gi|207087503|gb|EDZ64786.1| GTP-binding protein Era [beta proteobacterium KB13]
          Length = 293

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 81/215 (37%), Gaps = 30/215 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  + ++I +    TTR+ +      +       DT G ++ 
Sbjct: 8   KIAIIGQPNVGKSTLLNFILGQKLSITSRKAQTTRNQILGIHSEQDIQFIFVDTPGYQQK 67

Query: 281 -DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS------FPKNIDFIFIGTKSDLYS 333
             + + K   K       + D+++ + E  +  EI        P +   I +  K D   
Sbjct: 68  FLNQMNKRMNKSVTSVFHDVDVVIFMSEPKALNEIEIELVKMIPNDTPVINLINKIDRV- 126

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EM 392
                            + ELI+ I S L    K +P SI         L +   +L E 
Sbjct: 127 ------------KNKNKILELID-INSELQIFKKIIPASIKLKDNQKIILQEISEFLPEQ 173

Query: 393 ASLNEKDCGLD-----IIAENLRLASVSLGKITGC 422
             + + D   D     + AE +R     + ++TG 
Sbjct: 174 DFIFDVDDITDKNERFLAAEIIR---EKIFRLTGD 205


>gi|93005226|ref|YP_579663.1| GTP-binding protein, HSR1-related [Psychrobacter cryohalolentis K5]
 gi|92392904|gb|ABE74179.1| GTP-binding protein, HSR1-related [Psychrobacter cryohalolentis K5]
          Length = 489

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 117/318 (36%), Gaps = 31/318 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  ++   + L   W   L   +  I        + +      +  + 
Sbjct: 116 RARTYEGKLQVELAQLNHLSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLQVRVM 174

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +      +    +QG+      +   I ++G++NAGKS+LFN L  +++    D    T
Sbjct: 175 QLKSRIEKVRQTRAQGRARRQKSDVPTISLVGYTNAGKSTLFNRLVDENI-YAADKLFAT 233

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     LD +G   V + DT G          E    T  E   ADL+L + + +S+  
Sbjct: 234 LDPTLRRLDWQGVGRVVLVDTVGFVRHLPHELVESFHATLEETLEADLLLHVIDSSSEDM 293

Query: 314 -----------ISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLISSFTGEGLEEL 354
                           ++  + +  K D+        Y++  +     +SS    G+EEL
Sbjct: 294 HEQIQAVKDVLAEIDNDVPVLNVYNKIDVTDEPARIGYASEGQPNRVYVSSRENLGMEEL 353

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGLDIIAENLRLAS 413
              ++ +L+        ++P        L   +  L +       D G + +    RL S
Sbjct: 354 SLAVQQLLTGTLTTFDLTLPYSAGQ---LKNALYELGVIQEESYDDSGHECLTI--RLPS 408

Query: 414 VSLGKITGCVDVE--QLL 429
             L ++ G  ++E   +L
Sbjct: 409 DRLRQLLGQANLEPLDVL 426


>gi|283796120|ref|ZP_06345273.1| GTP-binding protein HflX [Clostridium sp. M62/1]
 gi|291076336|gb|EFE13700.1| GTP-binding protein HflX [Clostridium sp. M62/1]
          Length = 417

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 90/234 (38%), Gaps = 20/234 (8%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
             + L+ +   I       ++ +V      E +  +     ++  H    +         
Sbjct: 143 LRNSLSRLGGGIGTRGPGEKKLEVDRRLIHERIGQLKSELENVKRHREVARQQRDRNCTV 202

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279
              I+G++NAGKS+L N L    + +  D+   T D  T  L+L  G  + ++DT G   
Sbjct: 203 SAAIVGYTNAGKSTLLNYLTDAGI-LAQDMLFATLDPTTRTLELPSGQKILLTDTVGFIR 261

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGT 327
                  E  K T  E   +D+IL + ++++ +  +               +   I +  
Sbjct: 262 KLPHHLIEAFKSTLEEARYSDIILHVVDVSNPQMETQIHIVYETLRQLEITDKTVITVFN 321

Query: 328 KSD------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           K D      +   +  ++   IS+ TGEG+  L+  ++ IL ++   L    P 
Sbjct: 322 KMDRLTGDVILRDFRSDFQVKISAKTGEGIPALLETLEGILRSRKVYLEKVFPY 375


>gi|187918516|ref|YP_001884079.1| GTP-binding protein Era [Borrelia hermsii DAH]
 gi|226741169|sp|B2S103|ERA_BORHD RecName: Full=GTPase Era
 gi|119861364|gb|AAX17159.1| hypothetical protein BH0660 [Borrelia hermsii DAH]
          Length = 290

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 80/204 (39%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G  + GKS+L N++    ++I++  P TTR+ +      +   +   DT 
Sbjct: 1   MKSGF-VSIIGRPSTGKSTLLNSICGHQISIISSTPQTTRNKIKGIFTDKRGQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGT 327
           G   +        +      +   +LIL + +I  +  I             I+F+ +  
Sbjct: 60  GFHLSKKKFNIALMNNVHSAITETELILYVIDIQDEPGIEENEILTIISKSKINFLVVIN 119

Query: 328 KSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D+  T   E                 IS+     +EE+ +KI + L       P    
Sbjct: 120 KIDIQKTKEREIMIFLEKKGIKKDNIIKISAEQKINIEEIKDKIYANLQEGPLYYPEEYY 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +      S+ +R + +  L E+
Sbjct: 180 TDQEMNLRTSEIIRGVTIKKLKEE 203


>gi|119774018|ref|YP_926758.1| GTP-binding protein Era [Shewanella amazonensis SB2B]
 gi|119766518|gb|ABL99088.1| GTP-binding protein Era [Shewanella amazonensis SB2B]
          Length = 332

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 28/215 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L K+ ++I +  P TTR  +          +   DT G+   +
Sbjct: 41  VAIVGRPNVGKSTLLNKLLKQKISITSRKPQTTRHRIMGIHTEGPNQIVFIDTPGLHIEE 100

Query: 282 DIVEKEGIKRTFLEVENADL--ILLLKEI---NSKKEISFPK------NIDFIFIGTKSD 330
                  + R       AD+  ++ + +     +  E+   K      +   +    K D
Sbjct: 101 KRAINRLMNRA-AASSLADVSMVIFVVDGMEWTADDEMVLNKLRRGGEHRKTVLAINKVD 159

Query: 331 --------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                         +   Y  +    +S+  G  +E L++  +  L       P    + 
Sbjct: 160 GIKEKEDLFPYLIEVSKKYPFDDIVPVSAKQGSNVERLLDLARESLPESVFFFPEDYVTD 219

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +   +  S+ VR   M  L + +   D     +  
Sbjct: 220 RSQRFMASEIVREKLMRFLGD-ELPYD-ATVEIEQ 252


>gi|21242079|ref|NP_641661.1| GTP-binding protein Era [Xanthomonas axonopodis pv. citri str. 306]
 gi|294626962|ref|ZP_06705553.1| GTP-binding protein Era [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294664536|ref|ZP_06729881.1| GTP-binding protein Era [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|25008431|sp|Q8PMU9|ERA_XANAC RecName: Full=GTPase Era
 gi|21107486|gb|AAM36197.1| GTP-binding protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|292598822|gb|EFF42968.1| GTP-binding protein Era [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292605698|gb|EFF49004.1| GTP-binding protein Era [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 299

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 29/226 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + ++G  N GKS+L NAL    V+IV++ P TTR  L          + + DT G+ RE 
Sbjct: 13  VAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQ 72

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISF-----------PKNIDFIFIG 326
              + +   +     +E  D  +L+ E    + +  ++F                   + 
Sbjct: 73  KRAMNRVMNRAARGSLEGVDAAVLVIEAGRWDEEDTLAFRVLSDAGVPVVLVVNKVDRLK 132

Query: 327 TKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            K+ L+    +          H +S+   +GL+ L+  +  ++            + +  
Sbjct: 133 DKTALFPFLAQVSEGRTFAAVHPVSALKRKGLDALVGDLLKLVPEAEAMFGEDEITDRSQ 192

Query: 380 LYHLSQTVRYLEMASLNEK-----DCGLDIIAENLRLASVSLGKIT 420
            +   + VR   M  L E+        ++  AE+   A + +G + 
Sbjct: 193 RFLAGELVREQLMRQLGEELPYATTVEIERFAED--GALLRIGAVI 236


>gi|78188547|ref|YP_378885.1| GTP-binding protein Era [Chlorobium chlorochromatii CaD3]
 gi|78170746|gb|ABB27842.1| GTP-binding protein Era [Chlorobium chlorochromatii CaD3]
          Length = 305

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 26/192 (13%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           +I+G  NAGKS+L NAL    ++IVT  P TTR  +T   + E   +   DT GI +   
Sbjct: 12  MIIGQPNAGKSTLLNALLDFKLSIVTPKPQTTRKKITGIYNSERCQIIFLDTPGILKPRQ 71

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEI-------------SFPKNIDFIFIGTKS 329
            + +  +      V +AD+++ L       E+               P     + +  KS
Sbjct: 72  KLHESMLGVVRSTVTDADVLIALLPYTGTAELFDRSFAAELFTEWILPSGKPVVAVLNKS 131

Query: 330 DLYSTYTEEYDHLI-------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           DL S   ++                  S+   + L  LI+ +   L       P    S 
Sbjct: 132 DLASQEEQKAAEAFVWEQWKPTNVLSVSALKRKNLTPLISALYPFLPLTEPLYPDEALST 191

Query: 377 KRHLYHLSQTVR 388
               + +S+ +R
Sbjct: 192 APERFFVSELIR 203


>gi|222823763|ref|YP_002575337.1| GTP-binding protein Era [Campylobacter lari RM2100]
 gi|254783290|sp|B9KGA1|ERA_CAMLR RecName: Full=GTPase Era
 gi|222538985|gb|ACM64086.1| GTP-binding protein Era [Campylobacter lari RM2100]
          Length = 290

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKSS+ N+L ++ +A+V+     TR  +   +  E   V   DT 
Sbjct: 1   MKSGF-VSIVGRTNAGKSSILNSLLEEKIAMVSHKQNATRRKINAIIMHEKNQVIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFPKNIDFIFIGTKSD 330
           G+  +   + +  I      + + D+IL +       I+ +  +     +  I +  K D
Sbjct: 60  GLHASSKAINQLMIDLAIKSIADCDVILFVASIYDDIIDYENFLKLNPKVPHIVLINKVD 119

Query: 331 LYSTYT 336
           L    T
Sbjct: 120 LADKKT 125


>gi|239928532|ref|ZP_04685485.1| ATP/GTP-binding protein [Streptomyces ghanaensis ATCC 14672]
 gi|291436858|ref|ZP_06576248.1| ATP/GTP-binding protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339753|gb|EFE66709.1| ATP/GTP-binding protein [Streptomyces ghanaensis ATCC 14672]
          Length = 601

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 101/263 (38%), Gaps = 29/263 (11%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS--EEEDVQNFSSKEVLND 195
           E + Q  L+       +      W   L+      +     +    E       + +   
Sbjct: 191 EGKAQVSLAQMQY---MLPRLRGWGQSLSRQMGGGKGGGLATRGPGETKIETDRRRIREK 247

Query: 196 ILFLKNDISSHI--SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  ++ +I+      + K  E  RN    + I G++NAGKSSL N L    V +V +   
Sbjct: 248 MAKMRREIAEMKTGREVKRQERKRNKVPSVAIAGYTNAGKSSLLNRLTGAGV-LVENALF 306

Query: 253 TTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE---I 308
            T D      +   G L  ++DT G          E  + T  EV ++DLIL + +    
Sbjct: 307 ATLDPTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGSHP 366

Query: 309 NSKKEISFPK---------NIDFIFIGTKSDLYSTYT-------EEYDHLISSFTGEGLE 352
           N +++++  +         ++  I +  K+D     T       E+    +S+ TG+ +E
Sbjct: 367 NPEEQLAAVREVIRDVGATDVPEIVVINKADAADPLTLQRLLRVEKRSLAVSARTGQNIE 426

Query: 353 ELINKIKSILSNKFKKLPFSIPS 375
           +L+  I + L     ++   +P 
Sbjct: 427 QLLAFIDAELPRPSVEIEALVPY 449


>gi|309777994|ref|ZP_07672936.1| GTP-binding protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914283|gb|EFP60081.1| GTP-binding protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 397

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  N+GKS+L N +  + ++ V+ I GTT D +   ++L G   V   DTAG  
Sbjct: 12  LHIGIFGKRNSGKSTLLNTITGQKISTVSPIAGTTTDPVIKAMELHGLGPVVFYDTAGFD 71

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-KEINSKKEISF-----PKNIDFIFIGTKSDLY 332
           +  ++     +++T   ++  D+ +L+ ++ +   E+ +      K I  + I  K +  
Sbjct: 72  DEGELGALR-VEKTKEIIQKTDMAILVFRDPDISWEMEWYDALKEKKIPVLCIWNKDNRD 130

Query: 333 STYTEE 338
               E+
Sbjct: 131 RAQVEK 136


>gi|167761626|ref|ZP_02433753.1| hypothetical protein CLOSCI_04038 [Clostridium scindens ATCC 35704]
 gi|167660769|gb|EDS04899.1| hypothetical protein CLOSCI_04038 [Clostridium scindens ATCC 35704]
          Length = 426

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 88/247 (35%), Gaps = 29/247 (11%)

Query: 186 NFSSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKK 242
               + +   I  L  ++       +    +  RN   +  I+G++NAGKS+L N L   
Sbjct: 165 EMDRRLIKGRIAQLNRELRDVKRHREVTREQRSRNRIPVAAIVGYTNAGKSTLLNTLTGA 224

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            + +  D    T D  T +L L  G  + ++DT G          E  + T  E   AD+
Sbjct: 225 GI-LAEDKLFATLDPTTRELKLPSGQEILLTDTVGFIRKLPHHLIEAFRSTLEEARYADI 283

Query: 302 ILLLKEINSKKEISFP------------KNIDFIFIGTKSD------LYSTYTEEYDHLI 343
           IL + +  + +                  +   + I  K D      +   +  +Y   I
Sbjct: 284 ILHVVDAANPQMDEQMYIVYETLQNLGVTDKPIVTIFNKQDKAQDDVIIRDFHADYTVKI 343

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL------SQTVRYLEMASLNE 397
           S+ T EG+ EL+  I+++L  +   +    P        +       Q   Y E      
Sbjct: 344 SAKTREGIPELLKTIEAVLRQQKVAIENLYPYQDAAKIQMIRRFGELQEEEYREDGIFVR 403

Query: 398 KDCGLDI 404
               +DI
Sbjct: 404 AYVPVDI 410


>gi|77359684|ref|YP_339259.1| GTP-binding protein Era [Pseudoalteromonas haloplanktis TAC125]
 gi|76874595|emb|CAI85816.1| GTP-binding protein era [Pseudoalteromonas haloplanktis TAC125]
          Length = 310

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N + ++ V+I +  P TTR  +        +     DT G+  E 
Sbjct: 21  IAIVGRPNVGKSTLLNKIIEQKVSITSRKPQTTRHRIMGIHTEGKHQAVYVDTPGLHVEE 80

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +LI+ + E    N+  ++   K        + +  K DL  
Sbjct: 81  KRAINRLMNRAASSSIGDVELIIFVVEGTHWNADDDMVLNKVSQSGKPVLLVINKIDLVK 140

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  H+               S+  G+ ++ +  ++   L       P    + +  
Sbjct: 141 DRDLVLPHMKWLGDKFDFIGIMPVSAEQGKNIDLIKAEVTKRLQPSEFYFPEDYVTDRSM 200

Query: 380 LYHLSQTVR 388
            +  ++T+R
Sbjct: 201 RFMAAETIR 209


>gi|227328580|ref|ZP_03832604.1| GTP-binding protein Era [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 301

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +LI+ + E    N   E+   K     +  +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELIIFVVEGTHWNDDDEMVLNKLRDQKLPVLLAINKVDNVT 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T+   H+               S+  G  ++ + + ++  L       P    + +  
Sbjct: 131 DKTKLLPHIQFLSQQMDFLDVVPISAEKGTNVDTIASIVRKHLPQATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 191 RFMASEIIREKLMRFLGEE 209


>gi|312958653|ref|ZP_07773173.1| GTP-binding protein [Pseudomonas fluorescens WH6]
 gi|311287196|gb|EFQ65757.1| GTP-binding protein [Pseudomonas fluorescens WH6]
          Length = 433

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 104/297 (35%), Gaps = 27/297 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L      I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLDHMSTRLVRGWTH-LERQGGGIGMRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN + K DV    D    T
Sbjct: 174 QIKGRLEKVRSQREQSRRGRSRADIPTVSLVGYTNAGKSTLFNNVTKSDV-YAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     LD++    + ++DT G          E  + T  E  N+DL+L + +      
Sbjct: 233 LDPTLRRLDIDDLGPIVLADTVGFIRHLPHKLVEAFRSTLEESSNSDLLLHVIDAAEPDR 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +               +++  + +  K DL      +             +S+  G GLE
Sbjct: 293 MLQIEQVMVVLGEIGAQDLPILEVYNKLDLLEGVEPQIQRDENGKPQRVWLSARDGSGLE 352

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            L   I  +L +       ++   +R     +Q      +      + G+ ++A  L
Sbjct: 353 LLEQAIAELLGSDL--FVGTLRLPQRFARLRAQFFELGAVQKEEHDEEGVSLLAVRL 407


>gi|227495128|ref|ZP_03925444.1| GTP-binding protein Era [Actinomyces coleocanis DSM 15436]
 gi|226831580|gb|EEH63963.1| GTP-binding protein Era [Actinomyces coleocanis DSM 15436]
          Length = 352

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 6/141 (4%)

Query: 176 LDFSEEEDVQNFSSKEVL----NDILFLKNDISS-HISQGKLGEIIRNGYKIVILGHSNA 230
           +D     D       +       +   L   +S+  + +       R G+ I I+G  N 
Sbjct: 10  IDGPNAFDEDILEFDDDAIAAYEETGVLPGQVSAGSLVEADHDPNFRAGF-IAIVGRPNV 68

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKS+L NAL  + +AI +  P TTR  +   +  + Y + + DT G      ++ +   +
Sbjct: 69  GKSTLTNALVGEKIAITSMRPETTRHNVRGVVHGDDYQLVLVDTPGYHRPRTLLGRRLNE 128

Query: 291 RTFLEVENADLILLLKEINSK 311
                +   D+I+     + K
Sbjct: 129 MVRESLSEVDVIVFCLPSDQK 149


>gi|46580178|ref|YP_010986.1| GTP-binding protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46449595|gb|AAS96245.1| GTP-binding protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233831|gb|ADP86685.1| small GTP-binding protein [Desulfovibrio vulgaris RCH1]
          Length = 410

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 67/172 (38%), Gaps = 18/172 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  N GKSSL NAL ++ V+IV+  PGTT D +   +++     V   DTAGI 
Sbjct: 10  LHIGIYGRRNVGKSSLLNALTRQTVSIVSATPGTTTDPVEKTMEMAPIGPVVFIDTAGID 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN-------SKKEISFPKNIDFIFIGTKSD- 330
           +T D+       RT    +  DL L+  E +               + I  I + TK D 
Sbjct: 70  DTGDLGLMRS-DRTRQMFDRTDLALVASEGDVWGDYERDLVAAFRERKIPVIAVLTKGDE 128

Query: 331 -------LYSTYTEEYDHLISSFT-GEGLEELINKIKSILSNKFKKLPFSIP 374
                    S   E  +      T G G++ L   +  +        P  + 
Sbjct: 129 TPVAQTVRQSLLAEGIESAAVCSTDGRGIDALRALMARMAPEHAISQPALLA 180


>gi|297171661|gb|ADI22655.1| GTPase [uncultured Gemmatimonadales bacterium HF0500_22O06]
          Length = 317

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 22/177 (12%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +    E+ R GY + ++G  N GKS+L N L  + ++IVT    TT   +T  L +   
Sbjct: 9   EESNPVEVTRTGY-VTLVGRPNVGKSTLLNQLVGEHLSIVTPKAQTTWQRVTGILSVGTD 67

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPK 318
            +   DT G+ E  D++++  +      +  AD+ +LL +  +K          E     
Sbjct: 68  QMIFLDTPGLLEAKDMLQRAMLGAALEALAEADITILLIDSTTKPDSREAASTIEALSET 127

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLI------------SSFTGEGLEELINKIKSILS 363
           N        K D+                        SS TG+G++ L+  +++ L 
Sbjct: 128 NAPLHIALNKVDIADEEAIRAWEAWADRELSGSIYQLSSLTGKGVDALLEGLRADLP 184


>gi|120602432|ref|YP_966832.1| small GTP-binding protein [Desulfovibrio vulgaris DP4]
 gi|120562661|gb|ABM28405.1| iron-only hydrogenase maturation protein HydF [Desulfovibrio
           vulgaris DP4]
          Length = 410

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 67/172 (38%), Gaps = 18/172 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  N GKSSL NAL ++ V+IV+  PGTT D +   +++     V   DTAGI 
Sbjct: 10  LHIGIYGRRNVGKSSLLNALTRQTVSIVSATPGTTTDPVEKTMEMAPIGPVVFIDTAGID 69

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN-------SKKEISFPKNIDFIFIGTKSD- 330
           +T D+       RT    +  DL L+  E +               + I  I + TK D 
Sbjct: 70  DTGDLGLMRS-DRTRQMFDRTDLALVASEGDVWGDYERDLVAAFRERKIPVIAVLTKGDE 128

Query: 331 -------LYSTYTEEYDHLISSFT-GEGLEELINKIKSILSNKFKKLPFSIP 374
                    S   E  +      T G G++ L   +  +        P  + 
Sbjct: 129 TPVAQTVRQSLLAEGIESAAVCSTDGSGIDALRALMARMAPEHAISQPALLA 180


>gi|114775684|ref|ZP_01451252.1| GTPase [Mariprofundus ferrooxydans PV-1]
 gi|114553795|gb|EAU56176.1| GTPase [Mariprofundus ferrooxydans PV-1]
          Length = 433

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 107/294 (36%), Gaps = 27/294 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +L  L   W         F         + ++     +  + 
Sbjct: 122 RARTREGVLQVELASLNYQLGRLVRSWTHLERQRGGFGFMGGPGERQIELDRRMIRNSIG 181

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +      +    +  + G   ++   + ++G++NAGKS+LFN L   DV  V +    T
Sbjct: 182 ALERDLAKVKRMRATQRSGRQRKDIPTVALVGYTNAGKSTLFNRLTTSDV-FVANQLFAT 240

Query: 255 RDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L+L  G  + +SDT G  +       +  + T  EV  ADLIL +++ +   +
Sbjct: 241 LDPTLRLLELPGGLRLMLSDTVGFVQELPHELVDAFRATLEEVIEADLILHVRDASDPMQ 300

Query: 314 ISFPK---------------NIDFIFIGTKSDLYSTYTEEYDH-------LISSFTGEGL 351
               K                   + I  K D        +          IS+ TGEGL
Sbjct: 301 AEHAKVVHDTLQQLGVVGDGAPQVVEILNKKDRVPELASFHGEGITTSRLAISALTGEGL 360

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
           +EL + + S L     +L   +         L+    +  + S    D  LD++
Sbjct: 361 DELTDLLGSWLQRDMHELHLRLAISDG--RSLAYCHAHGSILSSRADDDVLDLV 412


>gi|228470301|ref|ZP_04055205.1| small GTP-binding protein [Porphyromonas uenonis 60-3]
 gi|228308044|gb|EEK16919.1| small GTP-binding protein [Porphyromonas uenonis 60-3]
          Length = 398

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 21/175 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
              +IV++G  N+GKS+L+N L +++ ++V+D  GTT D +    +L     V + DT G
Sbjct: 9   ERKRIVLVGQVNSGKSTLYNRLLRQERSLVSDQAGTTTDSVEKLFELPSVGPVLLVDTPG 68

Query: 277 I-RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSD 330
           +  ET    E++ +  T   + +ADLIL L       +          ++  + I  ++D
Sbjct: 69  LADETPLGAERQRV--TQHALSSADLILYLLSCEESLDTPIITALRKASVPTLPIIARAD 126

Query: 331 LY--STYTEEYDHLISSF----------TGEGLEELINKIKSILSNKFKKLPFSI 373
           L   S++ E  + ++  F            + L+ L+  IK  LSN+ +  P  +
Sbjct: 127 LPEQSSWLERQEEIMRCFGHTPLTLRQDDEKSLDTLLEAIKRTLSNESEPAPSLL 181


>gi|332187780|ref|ZP_08389514.1| GTP-binding protein Era [Sphingomonas sp. S17]
 gi|332012130|gb|EGI54201.1| GTP-binding protein Era [Sphingomonas sp. S17]
          Length = 298

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L NAL  + VAIV+    TTR  L          + + DT GI E  
Sbjct: 9   VAVVGAPNAGKSTLVNALVGQKVAIVSPKAQTTRAKLLGVAIEGEAQILLVDTPGIFEPK 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE--------INSKKEISFPKNIDFIFIGTKSDLYS 333
             +++  +   +   E AD++ L+ +        + +  E    +      I  K D+  
Sbjct: 69  RRLDRAMVAAAWEGAEGADILALVVDGKGGIGPKVTAIAESIAHRPEPKHLILNKVDIAD 128

Query: 334 T-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                            +    +S+ TG+GL EL  ++  ++       P    S     
Sbjct: 129 KARLLGHAEKLNQVVPFDETWFVSAQTGDGLPELKTRLAGLMPQGPWHYPEDQVSDATER 188

Query: 381 YHLSQTVRYLEMASLNEK 398
              ++  R      L+ +
Sbjct: 189 ALAAEVTREQIYLQLHAE 206


>gi|262281583|ref|ZP_06059361.1| GTP-binding protein HflX [Acinetobacter calcoaceticus RUH2202]
 gi|262256959|gb|EEY75699.1| GTP-binding protein HflX [Acinetobacter calcoaceticus RUH2202]
          Length = 447

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 61/328 (18%), Positives = 116/328 (35%), Gaps = 34/328 (10%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + T E + ++ +  +    + L   W       +  I         E       + + 
Sbjct: 114 LRARTHEGKLQVELAQLKHLSTRLIRGWSADFEQQKGGIGLR---GPGETQLETDRRLIR 170

Query: 194 NDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             I  LK+ +         G   R       + ++G++NAGKS+LFN LAK DV    D 
Sbjct: 171 VRIAQLKDKLEKVHQTRIQGRAARQKAAIPTVSLVGYTNAGKSTLFNILAKSDV-YAADQ 229

Query: 251 PGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D     L+ +G   V ++DT G          E  K T  E   A L+L + + N
Sbjct: 230 LFATLDPTLRRLEWDGIGTVVLADTVGFVRNLQHDLVESFKATLEETLEATLLLHVIDSN 289

Query: 310 SKKEISFPK-----------NIDFIFIGTKSDLYSTYTEEY--------DHLISSFTGEG 350
           S   +   +           +   + +  K DL     +             +S+  G G
Sbjct: 290 SHDMLDQIEAVEGVLKEIGADAPVLRVYNKIDLSGEEAKIIYAEPHVPDRVYVSAHAGLG 349

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           L+ L   ++  L  + +     +      L      +  ++    ++      ++  ++R
Sbjct: 350 LDLLQQAVQECLMGQIQHFSLILKPAYGKLRTQLYALNVIQSEHYDDAG----LLHIDVR 405

Query: 411 LASVSLGKITGCVD--VEQLLDIIFSKF 436
           +A   L K+       +E++L    S+F
Sbjct: 406 IAPHKLEKLIRQAKLPLEEILGERASQF 433


>gi|332558240|ref|ZP_08412562.1| small GTP-binding protein [Rhodobacter sphaeroides WS8N]
 gi|332275952|gb|EGJ21267.1| small GTP-binding protein [Rhodobacter sphaeroides WS8N]
          Length = 447

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 31/229 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   ++ ++  +   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 190 EADRRAIDEQVIRIRRQLDKVVKTRELHRASRRKVPFPIVALVGYTNAGKSTLFNRMTGA 249

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 250 DV-LAKDMLFATLDPTMRGVTLPSGRKVILSDTVGFISDLPTQLVAAFRATLEEVLEADL 308

Query: 302 ILLLKEINSKKEISFPKN-------------IDFIFIGTKSDLYS----------TYTEE 338
           IL +++I   +      +                + +  K DL                E
Sbjct: 309 ILHVRDIAHPETAEQAADVAEILQSLGVKGATPQVEVWNKLDLVEGAAHEQLLAQAAKSE 368

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLS 384
               +S+ TGEGL +L+  + +    +  +   S+      +R   H  
Sbjct: 369 TIFALSALTGEGLPDLLEAVSAAFDEEKTERQLSLGFADGRRRAWLHAE 417


>gi|167005307|ref|ZP_02271065.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 279

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKE----ISFPKNIDFIFIGTKSD 330
           G+ E+   + +  ++     + + D+IL +  + +S K+    +S    +  I    K D
Sbjct: 60  GLHESGATLNQLLVQSAIKSIGDCDVILFVASVFDSTKDYENFLSLNPQVPHIIALNKVD 119

Query: 331 LYSTYT 336
           L    T
Sbjct: 120 LTDNAT 125


>gi|170762293|ref|YP_001752575.1| GTP-binding protein Era [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|186701592|ref|ZP_02553723.2| GTP-binding protein Era [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|13959363|sp|Q9PPZ9|ERA_UREPA RecName: Full=GTPase Era
 gi|189037684|sp|B1AJD1|ERA_UREP2 RecName: Full=GTPase Era
 gi|168827870|gb|ACA33132.1| GTP-binding protein Era [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|186700821|gb|EDU19103.1| GTP-binding protein Era [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 300

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 23/167 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NA+ KK V+I+++ P TTR+ +    + +   +  +DT G  E  
Sbjct: 8   VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGFHEPS 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLK------EINSKKEISFPK---NIDFIFIGTKSD-- 330
           + ++        +  + A++IL +       + N  + I+  K     + I + +K++  
Sbjct: 68  NKLDLFLNHEIEISYKEANVILFVTTMDKELDANDFEIINLIKEANKENIILVISKAEMA 127

Query: 331 ------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                       L      +    IS+     +++LIN IK+ L   
Sbjct: 128 KNQDQIDERIHFLKKHIAFKDVVQISALHVINIDKLINTIKNYLHKD 174


>gi|330466447|ref|YP_004404190.1| gtp-binding proten hflx [Verrucosispora maris AB-18-032]
 gi|328809418|gb|AEB43590.1| gtp-binding proten hflx [Verrucosispora maris AB-18-032]
          Length = 480

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 81/217 (37%), Gaps = 21/217 (9%)

Query: 205 SHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           S + + K     RN    + I G++NAGKSSL N L    V +   +  T          
Sbjct: 237 STVRETKRSRRTRNAVPAVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTTRRATT 296

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE---------INSKKEI 314
            EG +  +SDT G          E  + T  E+  ADL++ + +         + + +E+
Sbjct: 297 SEGRVYTLSDTVGFVRHLPHQIVEAFRSTLEEIAEADLVVHVVDGTHPDPQEQVRAVREV 356

Query: 315 SFPKNIDF---IFIGTKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSN 364
                 D    + +  K+D     T             +S+++G G+++L   I+  L  
Sbjct: 357 LTEVGADRLPELLVVNKTDAADEETLLQLKRIWPEAVFVSAYSGRGIDDLRATIEQRLPR 416

Query: 365 KFKKLPFSIPSHKRHLYH-LSQTVRYLEMASLNEKDC 400
               +   +P  +  L   L +    L  A L E   
Sbjct: 417 PAVDVRVVLPYDRGDLVARLHRQGEVLSTAHLPEGTM 453


>gi|254382934|ref|ZP_04998290.1| GTP-binding protein Era [Streptomyces sp. Mg1]
 gi|194341835|gb|EDX22801.1| GTP-binding protein Era [Streptomyces sp. Mg1]
          Length = 323

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+    +G  NAGKS+L NAL    VAI ++ P TTR  +   +      + + DT G
Sbjct: 23  RAGF-ACFVGRPNAGKSTLTNALVGTKVAITSNRPQTTRHTVRGIVHRPDAQLVLVDTPG 81

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++ +             D+I      + K         KE++  K    I I T
Sbjct: 82  LHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDKFIAKELAGIKKTPKIAIIT 141

Query: 328 KSDLYST 334
           K+DL  +
Sbjct: 142 KTDLVES 148


>gi|328885518|emb|CCA58757.1| GTP-binding protein HflX [Streptomyces venezuelae ATCC 10712]
          Length = 497

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 99/268 (36%), Gaps = 28/268 (10%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS--EEEDVQNFSSKEV 192
            +++     ++++  M   +      W   L+            +    E       + +
Sbjct: 187 HAKSREGKAQVALAQMQ-YMLPRLRGWGQSLSRQMGGGGGGGMATRGPGETKIETDRRRI 245

Query: 193 LNDILFLKNDISSHI--SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTD 249
              +  ++ +I+        K  E  RN    + I G++NAGKSSL N L    V +V +
Sbjct: 246 REKMAKMRREIAEMKTGRDIKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGV-LVEN 304

Query: 250 IPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D      +   G +  ++DT G          E  + T  EV ++DLIL + + 
Sbjct: 305 ALFATLDPTVRRAETPTGRVYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDG 364

Query: 309 NSKKEISFPK------------NIDFIFIGTKSDLYSTYT-------EEYDHLISSFTGE 349
           +                     N+  I +  K+D             E++  ++S+ +G+
Sbjct: 365 SHPAPEEQLAAVREVFRDVGAVNVPEIVVINKADAADPLVLQRLLRMEKHSIVVSARSGQ 424

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHK 377
           G+E+L+  I S L     +L   +P  +
Sbjct: 425 GIEQLLALIDSELPRPEVELEALVPYTQ 452


>gi|290960557|ref|YP_003491739.1| GTP-binding protein [Streptomyces scabiei 87.22]
 gi|260650083|emb|CBG73199.1| GTP-binding protein [Streptomyces scabiei 87.22]
          Length = 320

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+    +G  NAGKS+L NAL  + VAI  D P TTR  +   +      + + DT G
Sbjct: 20  RAGF-ACFVGRPNAGKSTLTNALVGQKVAITADQPQTTRHTVRGIVHRPDAQLILVDTPG 78

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++ +             D+I      N K         KE++  K    I I T
Sbjct: 79  LHKPRTLLGQRLNDVVRTTWAEVDVIGFCLPANEKLGPGDRFIAKELASIKKTPKIAIVT 138

Query: 328 KSDLYST 334
           K+DL  +
Sbjct: 139 KTDLVES 145


>gi|284040066|ref|YP_003389996.1| GTP-binding protein Era [Spirosoma linguale DSM 74]
 gi|283819359|gb|ADB41197.1| GTP-binding protein Era [Spirosoma linguale DSM 74]
          Length = 306

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD--LEGYLVKI--SDTAGI 277
           + I+G  N GKS+L N L  + ++I+T    TTR  +   L+   +G   ++  SDT GI
Sbjct: 18  VSIVGKPNVGKSTLMNQLVGERLSIITAKAQTTRHRIMGILNGTHDGTEFQLVYSDTPGI 77

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSD 330
            +    + +  +      +E+AD++L + +I      N   E      +  + +  K D
Sbjct: 78  IKPLYKLHESMMSFVRGSIEDADVVLFVTDIFEQHDENDVIERLQKSEVPVLLLINKVD 136


>gi|257055404|ref|YP_003133236.1| GTP-binding protein Era [Saccharomonospora viridis DSM 43017]
 gi|256585276|gb|ACU96409.1| GTP-binding protein Era [Saccharomonospora viridis DSM 43017]
          Length = 300

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 80/217 (36%), Gaps = 25/217 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+    +G  NAGKS+L NAL    VAI +  P TTR  +   +  E   + I DT G
Sbjct: 7   RSGF-ACFVGRPNAGKSTLTNALVGSKVAITSSKPQTTRHAIRGIVHREDAQLIIVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIG 326
           +     ++ +             D++      + K          +     +    + I 
Sbjct: 66  LHRPRTLLGQRLNDIVRATWSEVDVVGFCVPADEKIGPGDRFIANELTKIARRTPVLGIV 125

Query: 327 TKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           TK+DL S                      +S+  G  ++ L + + + L    +  P   
Sbjct: 126 TKTDLVSKEQVAKQLLALQDVMDFADLIPVSAVDGYQVDTLADLLVARLPEGPELYPDGD 185

Query: 374 PSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL 409
            + +     +++ +R   +  + +E    + ++ E +
Sbjct: 186 LTDEPEQTLVAELIREAALEGVRDELPHSIAVVVEEM 222


>gi|261886518|ref|ZP_06010557.1| GTP-binding protein Era [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 270

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ I ++G +NAGKSSL N L  + +++V+     TR  +   +  +       DT 
Sbjct: 1   MKSGF-ISLIGRTNAGKSSLLNYLLNEKISMVSHKQNATRRKINGIVMHKDSQAIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNIDFIFIGTKSD 330
           G+ E++  + K  ++     + + DL+L +  +     N KK ++  K+   +   TK D
Sbjct: 60  GLHESNKTMNKLMVEAAIKSIGDCDLLLFVASVFDNIENYKKFLNLKKDAPHLIAITKID 119


>gi|225852611|ref|YP_002732844.1| GTP-binding proten HflX [Brucella melitensis ATCC 23457]
 gi|256113667|ref|ZP_05454478.1| GTP-binding proten HflX [Brucella melitensis bv. 3 str. Ether]
 gi|256263896|ref|ZP_05466428.1| GTP-binding protein [Brucella melitensis bv. 2 str. 63/9]
 gi|265995027|ref|ZP_06107584.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|225640976|gb|ACO00890.1| GTP-binding proten HflX [Brucella melitensis ATCC 23457]
 gi|262766140|gb|EEZ11929.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263094028|gb|EEZ17962.1| GTP-binding protein [Brucella melitensis bv. 2 str. 63/9]
 gi|326409130|gb|ADZ66195.1| GTP-binding proten HflX [Brucella melitensis M28]
 gi|326538838|gb|ADZ87053.1| GTP-binding proten HflX [Brucella melitensis M5-90]
          Length = 472

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 148 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 204

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 205 KILRIKRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 263

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 264 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 323

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 324 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAAGSEEGRPIP 383

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 384 VSAITGEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 421


>gi|118475630|ref|YP_892169.1| GTP-binding protein Era [Campylobacter fetus subsp. fetus 82-40]
 gi|189037254|sp|A0RPN6|ERA_CAMFF RecName: Full=GTPase Era
 gi|118414856|gb|ABK83276.1| GTP-binding protein Era [Campylobacter fetus subsp. fetus 82-40]
          Length = 289

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ I ++G +NAGKSSL N L  + +++V+     TR  +   +  +       DT 
Sbjct: 1   MKSGF-ISLIGRTNAGKSSLLNYLLNEKISMVSHKQNATRRKINGIVMHKDSQAIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNIDFIFIGTKSD 330
           G+ E++  + K  ++     + + DL+L +  +     N KK ++  K+   +   TK D
Sbjct: 60  GLHESNKTMNKLMVEAAIKSIGDCDLLLFVASVFDNIENYKKFLNLKKDAPHLIAITKID 119


>gi|33152641|ref|NP_873994.1| GTP-binding protein Era [Haemophilus ducreyi 35000HP]
 gi|71151872|sp|Q7VL76|ERA_HAEDU RecName: Full=GTPase Era
 gi|33148865|gb|AAP96383.1| GTP-binding protein era-like protein [Haemophilus ducreyi 35000HP]
          Length = 304

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +      E Y     DT G+  E 
Sbjct: 15  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIQTEEQYQAIYVDTPGLHIEE 74

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + DLI+ + E        E+   K        +    K D   
Sbjct: 75  KRAINRLMNRAASSAIGDVDLIIFVVEGTKWTDDDEMVLNKLRTAKAPVVLAINKVDNIK 134

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H               IS+  G+ +  L   ++  L       P    + +  
Sbjct: 135 EKDELLPHITALSQKFDFAEILPISAQRGKNVHILQKIVRKSLREGVHHFPEEYVTDRSQ 194

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 195 RFMASEIIR 203


>gi|256061194|ref|ZP_05451346.1| GTP1/OBG [Brucella neotomae 5K33]
 gi|261325201|ref|ZP_05964398.1| GTP-binding protein [Brucella neotomae 5K33]
 gi|261301181|gb|EEY04678.1| GTP-binding protein [Brucella neotomae 5K33]
          Length = 472

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 148 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 204

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 205 KILRIKRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 263

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 264 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 323

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 324 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAAGSEEGRPIP 383

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 384 VSAITGEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 421


>gi|306818072|ref|ZP_07451803.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35239]
 gi|304649036|gb|EFM46330.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35239]
          Length = 303

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 27/209 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+ + +LG  N GKS+L N +  + +AI +  P TTR V    +   G+ + + D
Sbjct: 12  EDFRAGF-VAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVARGIVHRPGFQLVLVD 70

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI-----------SFPKNIDF 322
           T GI     ++ +    R       AD+ LL+  + + +EI                I  
Sbjct: 71  TPGIHRPRTLLGQRLNDRVEEA--QADVDLLVFCVPADQEIGPGDRRIVEKQLRANRIPA 128

Query: 323 IFIGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           + + TK+D             L   Y       +S+  G+ +E LI+ +  ++       
Sbjct: 129 LAVVTKTDVATPNQIAAQLLALNELYDFREIVPVSAVQGKQVELLIDLLGGLMPLSPPLY 188

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           P    S +     +++ +R   +  L ++
Sbjct: 189 PAGQDSDEDDEVMIAELIREAALEGLGQE 217


>gi|294629274|ref|ZP_06707834.1| GTP-binding protein Era [Streptomyces sp. e14]
 gi|292832607|gb|EFF90956.1| GTP-binding protein Era [Streptomyces sp. e14]
          Length = 320

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           S  + G+++        +G  NAGKS+L NAL  + VAI ++ P TTR  +   +     
Sbjct: 10  SSEQPGDMVHRAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPDA 69

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPK 318
            + + DT G+ +   ++ +             D+I      + K         KE++  K
Sbjct: 70  QLILVDTPGLHKPRTLLGERLNDVVRATWAEVDVIGFCLPADQKIGPGDRFIAKELAGIK 129

Query: 319 NIDFIFIGTKSDLYST 334
               + I TK+DL  +
Sbjct: 130 RTPKVAIVTKTDLVDS 145


>gi|269976802|ref|ZP_06183777.1| GTP-binding protein Era [Mobiluncus mulieris 28-1]
 gi|307700621|ref|ZP_07637649.1| GTP-binding protein Era [Mobiluncus mulieris FB024-16]
 gi|269934999|gb|EEZ91558.1| GTP-binding protein Era [Mobiluncus mulieris 28-1]
 gi|307614151|gb|EFN93392.1| GTP-binding protein Era [Mobiluncus mulieris FB024-16]
          Length = 303

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 27/209 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+ + +LG  N GKS+L N +  + +AI +  P TTR V    +   G+ + + D
Sbjct: 12  EDFRAGF-VAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVARGIVHRPGFQLVLVD 70

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI-----------SFPKNIDF 322
           T GI     ++ +    R       AD+ LL+  + + +EI                I  
Sbjct: 71  TPGIHRPRTLLGQRLNDRVEEA--QADVDLLVFCVPADQEIGPGDRRIVEKQLRANRIPA 128

Query: 323 IFIGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           + + TK+D             L   Y       +S+  G+ +E LI+ +  ++       
Sbjct: 129 LAVVTKTDVATPNQIAAQLLALNELYDFREIVPVSAVQGKQVELLIDLLGGLMPLSAPLY 188

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           P    S +     +++ +R   +  L ++
Sbjct: 189 PAGQDSDEDDEVMIAELIREAALEGLGQE 217


>gi|253689439|ref|YP_003018629.1| GTP-binding protein Era [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756017|gb|ACT14093.1| GTP-binding protein Era [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 301

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 74/199 (37%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +LI+ + E    N   E+   K     +  +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELIIFVVEGTHWNDDDEMVLNKLRDQKLPVLLAINKVDNVT 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T+   H+               S+  G  ++ + + ++  L       P    + +  
Sbjct: 131 DKTKLLPHIQFLSQQMDFLDVVPISAEKGTNVDTIASIVRKHLPQATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 191 RFMASEIIREKLMRFLGEE 209


>gi|217977174|ref|YP_002361321.1| GTP-binding protein Era [Methylocella silvestris BL2]
 gi|217502550|gb|ACK49959.1| GTP-binding protein Era [Methylocella silvestris BL2]
          Length = 310

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 27/221 (12%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
           G+  R G+ + ++G  NAGKS+L N L    V+IV+    TTR  +          +   
Sbjct: 13  GQAARCGF-VALIGAPNAGKSTLINQLVGAKVSIVSRKAQTTRAQVRGIAIEGDAQIIFV 71

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISFPKNIDFI----F 324
           DT GI      +++  +   +    +AD + LL +     +   E    +  D       
Sbjct: 72  DTPGIFAPRRRLDRAMVTSAWGGAGDADAVALLVDARKGLDEDVEAILARLADVRAAKIL 131

Query: 325 IGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +  K D                    ++  +IS+  G G+E +  ++ +++       P 
Sbjct: 132 VINKIDTVEPPKLLDIAAQFNDRLAFDHTFMISALRGYGVETMRRQLAALMPPGPWHYPE 191

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLN-----EKDCGLDIIAE 407
              S        ++  R      L+     +     DI  E
Sbjct: 192 DQISDAPMRSLAAEITREKIFERLHDELPYQSTVETDIWTE 232


>gi|226227313|ref|YP_002761419.1| GTP-binding protein [Gemmatimonas aurantiaca T-27]
 gi|226090504|dbj|BAH38949.1| GTP-binding protein [Gemmatimonas aurantiaca T-27]
          Length = 394

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 118/323 (36%), Gaps = 37/323 (11%)

Query: 125 LLEAESLADLISSE---TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181
           +  AE + D+ ++    +E + ++ +  +   L  L   W   L  +R  I        +
Sbjct: 61  MDRAELILDIFATRARSSEARMQVELAQLEYMLPRLTRMWTH-LEKMRGGIGMRGPGETQ 119

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
            +      +  +  +     D+       + G   R+ +++ ++G++NAGKSS+   LA 
Sbjct: 120 LETDRRLIQHRIRVLKERLADVERAREIQRQGR--RSQFRVSLVGYTNAGKSSVLRTLAN 177

Query: 242 KDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
                V D    T D LT ++++ +GY V ++DT G             + T  E   AD
Sbjct: 178 DGEVFVEDRLFATLDPLTREVEVGDGYTVLLTDTVGFIRKLPHHLVASFRATLAEAREAD 237

Query: 301 LILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE----------- 337
           L+L + + +                          ++  K D      +           
Sbjct: 238 LLLHVIDASHPTWEEHRDVVDGVLTDLGLSGRPMRYVMNKMDAVPEELDAGVRARVANLM 297

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQTVRYLEMASLN 396
                +S+    GLE L  +++  L      L   IP S+ R +  + +    LE  +  
Sbjct: 298 PDSLFVSALEPGGLEGLRTELRESLKRSRPVLEVRIPASNGRLIAEVHRDGEVLEQRT-- 355

Query: 397 EKDCGLDIIAENLRLASVSLGKI 419
                 ++I    RL   ++G++
Sbjct: 356 ----DEELIVIRARLDERAIGRL 374


>gi|259090130|pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
           Iransporter
          Length = 168

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 19/159 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ + G  N GK+SLFNAL       V + PG T +        +GY + + D  G   
Sbjct: 6   VKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------------ISFPKNIDFI 323
                  E I R +L   +ADL++L+ +  + ++                ++     +  
Sbjct: 65  LGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAK 124

Query: 324 FIGTKSDLYS--TYTEEYDHLISSFTGEGLEELINKIKS 360
             G K D Y    +        SS TGEGLEEL  KI  
Sbjct: 125 KTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVE 163


>gi|227833308|ref|YP_002835015.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184292|ref|ZP_06043713.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454324|gb|ACP33077.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC
           700975]
          Length = 492

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 102/256 (39%), Gaps = 38/256 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG----YKIVILGHSNAGKSSLFNALAKKD 243
             + +   +  L+ ++ + +   +  +  R       +I I G++NAGKSSL NA+    
Sbjct: 228 DRRRIRTQMALLRKELKA-MKTAREIKRSRRASSTIPQIAIAGYTNAGKSSLINAMTGAG 286

Query: 244 VAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           V +V D    T D  T   +L +G  V  +DT G          E  K T  EV +ADL+
Sbjct: 287 V-LVEDALFATLDPTTRRAELADGRQVVFTDTVGFVRHLPTQLVEAFKSTLEEVLSADLM 345

Query: 303 LLLKEINSKKEISFPKNIDF----------------IFIGTKSD---------LYSTYTE 337
           L + + +    +   + ++                 I +  K D         L      
Sbjct: 346 LHVVDGSDPFPLKQIEAVNAVIYDIVKETGEDAPPEIIVINKIDQADPLVLAELRHALDR 405

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVRYLE--- 391
           +    +S+ TGEG++EL  +++  L+++ + +   IP  +       H   TVR  E   
Sbjct: 406 DNVVYVSAKTGEGIDELTTRVELFLNSRDEHVQLLIPFTRGDVVDRIHTQGTVRSEEYTG 465

Query: 392 MASLNEKDCGLDIIAE 407
             +L +      I AE
Sbjct: 466 EGTLVDVRLPASIAAE 481


>gi|94676810|ref|YP_588730.1| GTP-binding protein Era [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219960|gb|ABF14119.1| GTP-binding protein Era [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 301

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G SN GKS+L N L  + V+I +  P TTR  +      + Y +   DT G+    
Sbjct: 11  VAIVGRSNVGKSTLLNKLLGQKVSITSRKPQTTRHRILGIKTDDIYQIIYIDTPGLHLRV 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFP----KNIDFIFIGTKSDLYS 333
            + +     +R    + + DLI+ + E        E+       ++   + +  + D  +
Sbjct: 71  KNKLSILMNRRASSSMNDVDLIIFVVEGIKWTKDDELVLSQLYDRHCRVVLVINQIDKVA 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H+                +  G G+  L + ++  L       P    +    
Sbjct: 131 DKNKLLKHMNLLDKKSNFHAIILACALNGIGVNILADVVRKELPIAHHLFPNEYITDCSP 190

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 191 CFMAAEIIR 199


>gi|239917732|ref|YP_002957290.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665]
 gi|281413773|ref|ZP_06245515.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665]
 gi|239838939|gb|ACS30736.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665]
          Length = 321

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 69/161 (42%), Gaps = 12/161 (7%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           ++  +   +  +  R+G+ + ++G  NAGKS+L NAL  + VAI +  P TTR  +   +
Sbjct: 1   MTDLVDPARAADGFRSGF-VSLVGRPNAGKSTLTNALVGEKVAITSSKPQTTRHTIRGIV 59

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---------KKE 313
             E + + + DT G+     ++ +         +   D + +    +           ++
Sbjct: 60  HREDFQLVLVDTPGLHRPRTLLGERLNDLVAETLSEVDAVGMCLPADEAIGPGDRFIAQQ 119

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           +S+      + + TK+D      E+    + + T  G E L
Sbjct: 120 LSYLHRTPVVAVVTKTD--KVGPEQLMAQLVAVTALGEEVL 158


>gi|148270457|ref|YP_001244917.1| ribosome biogenesis GTP-binding protein YsxC [Thermotoga petrophila
           RKU-1]
 gi|166232160|sp|A5IMB8|ENGB_THEP1 RecName: Full=Probable GTP-binding protein EngB
 gi|147736001|gb|ABQ47341.1| small GTP-binding protein [Thermotoga petrophila RKU-1]
          Length = 195

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 26/170 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRE 279
           +  +G SN GKSSL NAL  K +A V+  PG TR +    ++ + Y V +     A + +
Sbjct: 26  VAFVGRSNVGKSSLLNALFNKKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSK 85

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDL 331
            + ++ K  ++  F    +  ++ LL +     +      I + K  NI F  + TK D 
Sbjct: 86  KERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDFMMIEWMKSLNIPFTIVLTKMDK 145

Query: 332 ----------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                           +S Y E      SS TGEG+ EL++ I ++L   
Sbjct: 146 VKMSERAKKLEEHQKEFSRYGEYTIIPTSSVTGEGISELLDLISTLLKEN 195


>gi|62290025|ref|YP_221818.1| GTP-binding protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699952|ref|YP_414526.1| ATP/GTP-binding domain-containing protein [Brucella melitensis
           biovar Abortus 2308]
 gi|189024265|ref|YP_001935033.1| GTP1/OBG [Brucella abortus S19]
 gi|254689337|ref|ZP_05152591.1| GTP1/OBG [Brucella abortus bv. 6 str. 870]
 gi|254697470|ref|ZP_05159298.1| GTP1/OBG [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730367|ref|ZP_05188945.1| GTP1/OBG [Brucella abortus bv. 4 str. 292]
 gi|256257583|ref|ZP_05463119.1| GTP1/OBG [Brucella abortus bv. 9 str. C68]
 gi|260546577|ref|ZP_05822316.1| GTP1/OBG [Brucella abortus NCTC 8038]
 gi|260754853|ref|ZP_05867201.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260758070|ref|ZP_05870418.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260761894|ref|ZP_05874237.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883865|ref|ZP_05895479.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|62196157|gb|AAX74457.1| GTP-binding protein, hypothetical [Brucella abortus bv. 1 str.
           9-941]
 gi|82616053|emb|CAJ11089.1| ATP/GTP-binding site motif A (P-loop):GTP1/OBG [Brucella melitensis
           biovar Abortus 2308]
 gi|189019837|gb|ACD72559.1| GTP1/OBG [Brucella abortus S19]
 gi|260095627|gb|EEW79504.1| GTP1/OBG [Brucella abortus NCTC 8038]
 gi|260668388|gb|EEX55328.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260672326|gb|EEX59147.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674961|gb|EEX61782.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260873393|gb|EEX80462.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
          Length = 472

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 148 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 204

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 205 KILRIKRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 263

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 264 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 323

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 324 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAVGSEEGRPIP 383

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 384 VSAITGEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 421


>gi|37527215|ref|NP_930559.1| GTP-binding protein Era [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786649|emb|CAE15713.1| GTP-binding protein era [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 302

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 67/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +        Y +   DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGAYQIIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E        E+   K        +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTHWTPDDEMVLNKLRNLRCPVLLAINKVDNVT 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T    H               +S+  G  ++ +   ++  +       P    + +  
Sbjct: 131 DKTSLLPHIGFLSKQMSFLDVVPMSAEKGMNVDTIAKIVRGYIPKAAHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|157165568|ref|YP_001466814.1| GTP-binding protein Era [Campylobacter concisus 13826]
 gi|189037252|sp|A7ZDF6|ERA_CAMC1 RecName: Full=GTPase Era
 gi|112801332|gb|EAT98676.1| GTP-binding protein Era [Campylobacter concisus 13826]
          Length = 289

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKSS  NAL  + +AIV+     TR  +   +      +  +DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSSFLNALLNEKIAIVSHKQNATRRKINGIVMNGEDQIIFTDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNIDFIFIGTKSD 330
           G+ E++  + +  I +    + + DLI+ L  I     + +K ++       I + TK D
Sbjct: 60  GLHESNKAINQLLISQAIKSMGDCDLIVFLAPIHDDTSDYEKFLALNPEKPHILVLTKVD 119

Query: 331 LYSTYT 336
             S   
Sbjct: 120 ESSNAK 125


>gi|297160580|gb|ADI10292.1| GTP-binding protein Era [Streptomyces bingchenggensis BCW-1]
          Length = 318

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+    +G  NAGKS+L NAL    VAI ++ P TTR  +   +      + + DT G
Sbjct: 18  RAGF-ACFVGRPNAGKSTLTNALVGTKVAITSNRPQTTRHTVRGIVHRPDAQLVLVDTPG 76

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNIDFIFIGT 327
           + +   ++ +             D+I      + K          E++  K    I I T
Sbjct: 77  LHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDRFIAGELAGIKKTPKIAIVT 136

Query: 328 KSDLYST 334
           K+DL  +
Sbjct: 137 KTDLVDS 143


>gi|326776154|ref|ZP_08235419.1| GTP-binding proten HflX [Streptomyces cf. griseus XylebKG-1]
 gi|326656487|gb|EGE41333.1| GTP-binding proten HflX [Streptomyces cf. griseus XylebKG-1]
          Length = 506

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 104/294 (35%), Gaps = 25/294 (8%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q +  +  + G   SL  Q     +     +        + +      +E +  +  
Sbjct: 204 SLAQMQYMLPRLRGWGQSLSRQMGGGGSSGGGGMATRGPGETKIETDRRRIREKMAKMRR 263

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
              ++ +     +          + I G++NAGKSSL N L    V +   +  T    +
Sbjct: 264 EIAEMKTGREIKRQERKRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 323

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEIS 315
                  G +  ++DT G          E  + T  EV  +DLIL + + +    +++++
Sbjct: 324 RRAETPSGRIYTLADTVGFVRHLPHHLVEAFRSTMEEVGESDLILHVVDGSHPVPEEQLA 383

Query: 316 FPK---------NIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGEGLEELINKIK 359
             +         ++  I +  K+D             E++   +S+ TG G++EL+  I 
Sbjct: 384 AVREVIRDVGAVDVREIVVINKADAADPLVLQRLLRNEKHAIAVSARTGAGIDELLALID 443

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQT------VRYLEMASLNEKDCGLDIIAE 407
           + L     ++   +P  +  L              +    +L +     ++ AE
Sbjct: 444 TELPRPSVEIEVLVPYIQGALVSRVHAEGEVLSEEHTAEGTLLKAQVHEELAAE 497


>gi|254839194|pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
           Methanococcus Jannaschii
 gi|254839195|pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
           Methanococcus Jannaschii
          Length = 168

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 19/157 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS++FNAL  ++V I  + PG T +    + +  G   K+ D  G+  
Sbjct: 5   YEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                  E I R ++  E  DL++ + +  + +              + +    K DL  
Sbjct: 64  LTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLXEXGANLLLALNKXDLAK 123

Query: 334 TYTEEYDHLI------------SSFTGEGLEELINKI 358
           +   E D               S+    G+EEL   I
Sbjct: 124 SLGIEIDVDKLEKILGVKVVPLSAAKKXGIEELKKAI 160


>gi|161619062|ref|YP_001592949.1| GTP-binding protein HSR1-related [Brucella canis ATCC 23365]
 gi|163843379|ref|YP_001627783.1| GTP-binding protein HSR1-related [Brucella suis ATCC 23445]
 gi|260566354|ref|ZP_05836824.1| GTP1/OBG protein [Brucella suis bv. 4 str. 40]
 gi|161335873|gb|ABX62178.1| GTP-binding protein HSR1-related [Brucella canis ATCC 23365]
 gi|163674102|gb|ABY38213.1| GTP-binding protein HSR1-related [Brucella suis ATCC 23445]
 gi|260155872|gb|EEW90952.1| GTP1/OBG protein [Brucella suis bv. 4 str. 40]
          Length = 472

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 148 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 204

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 205 KILRIKRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 263

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 264 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 323

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 324 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAAGSEEGRPIP 383

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 384 VSAITGEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 421


>gi|256044768|ref|ZP_05447672.1| GTP-binding protein HFLX [Brucella melitensis bv. 1 str. Rev.1]
 gi|260565630|ref|ZP_05836114.1| GTP1/OBG [Brucella melitensis bv. 1 str. 16M]
 gi|265991191|ref|ZP_06103748.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260151698|gb|EEW86792.1| GTP1/OBG [Brucella melitensis bv. 1 str. 16M]
 gi|263001975|gb|EEZ14550.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 472

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 99/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 148 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 204

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS LFN +    V +  D+ 
Sbjct: 205 KILRIKRELETVVRTRALHRQTRRKVPHPIVALVGYTNAGKSMLFNRMTGAQV-LAEDML 263

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 264 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 323

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 324 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAAGSEEGRPIP 383

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 384 VSAITGEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 421


>gi|257068243|ref|YP_003154498.1| GTP-binding proten HflX [Brachybacterium faecium DSM 4810]
 gi|256559061|gb|ACU84908.1| GTP-binding proten HflX [Brachybacterium faecium DSM 4810]
          Length = 521

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 88/250 (35%), Gaps = 28/250 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHI---SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
               + + + +  L+ +I +     ++ +          + I G++NAGKSSL N L   
Sbjct: 267 ELDRRRIRDRMSKLRREIKAMAPGRAEQRAHRTRHQVPAVAIAGYTNAGKSSLLNRLTGA 326

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G     +DT G          E  + T  EV  ADL+
Sbjct: 327 GVLVENALFATLDPTVRRSTTPDGREFTYADTVGFVRHLPTQLVEAFRSTLEEVGGADLL 386

Query: 303 LLLKEINSKK---EISFPK---------NIDFIFIGTKSDLYSTYTEEY-------DHLI 343
           L + + +      +I+  +         ++  I +  K+D+    T            ++
Sbjct: 387 LHVVDASHPDPEGQITAVRAVLGELEGFDVPEIVVLNKADIAEPETIARLRSQVGDSAVV 446

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ------TVRYLEMASLNE 397
           S+ TG G++EL   I   L     ++   +P  +  L              +L   +   
Sbjct: 447 SARTGMGIQELRELIAERLPRPAVEVDVVVPYSRGDLVSRVHSTGEVLAEEHLVEGTRVH 506

Query: 398 KDCGLDIIAE 407
                 + AE
Sbjct: 507 ARVDAALAAE 516


>gi|328543916|ref|YP_004304025.1| GTP binding protein-like protein [polymorphum gilvum SL003B-26A1]
 gi|326413660|gb|ADZ70723.1| GTP binding protein-like protein [Polymorphum gilvum SL003B-26A1]
          Length = 458

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 89/225 (39%), Gaps = 29/225 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               +++ + I+ L+ ++        L    R       + ++G++NAGKS+LFN L + 
Sbjct: 193 EADRRQIQDKIMRLEKELDQVRRTRDLHRKKRKKIPQPVVALVGYTNAGKSTLFNRLTEA 252

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 253 QV-LAKDLLFATLDPTLRRIKLPHGREVILSDTVGFISELPTHLVAAFRATLEEVLEADL 311

Query: 302 ILLLKEINSKKEISFPKNI---------------DFIFIGTKSD---------LYSTYTE 337
           IL +++I      +   ++                 + +  K D         L +  T+
Sbjct: 312 ILHVRDIAHPDTDAQAADVARTLEDLGVGPTTGAPIVEVWNKIDCLDAERRARLLAGQTD 371

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                +S+ TGEG+  L+ +I++ ++        ++P  +  L  
Sbjct: 372 SGPVALSALTGEGIGALLARIEAFMAQGDDTFELALPVEEGELLA 416


>gi|228992409|ref|ZP_04152340.1| hypothetical protein bpmyx0001_31510 [Bacillus pseudomycoides DSM
           12442]
 gi|228767434|gb|EEM16066.1| hypothetical protein bpmyx0001_31510 [Bacillus pseudomycoides DSM
           12442]
          Length = 425

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 111/318 (34%), Gaps = 35/318 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKLTHIRSFI 172
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q    +  +    
Sbjct: 80  NNELTPSQIRNLSAMLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 173 EA-------DLDFSEEEDVQNFSSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKI 222
            A              E       + + + I  +K  ++    H  + +        +++
Sbjct: 140 LALSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAIVVEHRKRYRERRKDNQVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMQLPCGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   +            +I  I +  K 
Sbjct: 259 PTSLVAAFRSTLEEAREADVILHVVDSADPNYVGHEQTVKKLLQDLEIDHIPIITVYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           D     +  + +    + S+F    L  L   +++ +  + +     IP  +  L  L +
Sbjct: 319 DRLHQNFIPFPKNDFLMTSAFEETDLLSLKESVETKMMEEMESYKVMIPPSEGRLLTLLK 378

Query: 386 TVRYLEMASLNEKDCGLD 403
           T   L      E     +
Sbjct: 379 TETVLTGMEFKEDGFLYE 396


>gi|259046633|ref|ZP_05737034.1| GTP-binding protein HflX [Granulicatella adiacens ATCC 49175]
 gi|259036798|gb|EEW38053.1| GTP-binding protein HflX [Granulicatella adiacens ATCC 49175]
          Length = 400

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 95/268 (35%), Gaps = 18/268 (6%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           + + ++  +          L        + L+     I          +      ++ + 
Sbjct: 111 MRARSKEGKLQVQLAQLNYLLPRLSGQREGLSRQGGGIGTRGPGETRLETDRRYIRKQIQ 170

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           DI      I  H  + +      NG+++ ++G++NAGKS++ N L +     +  +   T
Sbjct: 171 DIEEQLEQIKKHRERSREKRKSSNGFQLGLIGYTNAGKSTILNQLTQAGTYQMDQLFA-T 229

Query: 255 RDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---- 309
            D LT  +DL   + V ++DT G  +          + T  E  + DL++ + + +    
Sbjct: 230 LDPLTRQVDLFPNFEVTLTDTVGFIQDLPTTLIHAFESTLEESADVDLLVHVVDASNTQF 289

Query: 310 ---SKKEISFPKNIDFI-----FIGTKSDLYSTYTEE---YDHLISSFTGEGLEELINKI 358
               K  I    +++        +  K+DL     +        IS+     +E L   +
Sbjct: 290 SLHEKTVIDLVNDLEMQEILMVTVYNKTDLIEGEFQPNLYPSIQISAVNDADVERLKAFL 349

Query: 359 KSILSNKFKKLPFSI-PSHKRHLYHLSQ 385
           K  +  +       +  +  + L  L Q
Sbjct: 350 KEQVKAQMTYYEEWLEVTETKELNQLQQ 377


>gi|261492469|ref|ZP_05989023.1| GTP-binding protein Era [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496944|ref|ZP_05993312.1| GTP-binding protein Era [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307468|gb|EEY08803.1| GTP-binding protein Era [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311832|gb|EEY12981.1| GTP-binding protein Era [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 305

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N + ++ ++I +    TTR  +      + Y     DT G+  E 
Sbjct: 16  IAIVGRPNVGKSTLLNKILEQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 75

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + DLI+ + E        E+   K        +    K D   
Sbjct: 76  KRAINRLMNRAASSAIGDVDLIIFVVEGTKWTEDDEMVLNKLRSAKAPVLLAINKIDNIK 135

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H               IS+  G+ +  L   ++  L       P    + +  
Sbjct: 136 EKEELLPHITELSQKFDFAEILPISAQRGKNVHILQKFVRQSLRQGEHHFPEEYVTDRSQ 195

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 196 RFMASEIIR 204


>gi|118473995|ref|YP_888765.1| GTP-binding protein Era [Mycobacterium smegmatis str. MC2 155]
 gi|118175282|gb|ABK76178.1| GTP-binding protein Era [Mycobacterium smegmatis str. MC2 155]
          Length = 301

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 89/239 (37%), Gaps = 34/239 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + VAI ++ P TTR  +   +  E + + + DT G
Sbjct: 7   RSGF-VCFVGRPNTGKSTLTNALVGQKVAITSNRPQTTRHTIRGIVHREDFQIILVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           +     ++ +             D+I +    +           ++  +       I I 
Sbjct: 66  LHRPRTLLGQRLNDLVKDTYSEVDVIGMCIPADEAIGPGDRWIYQQIRAVAPRTTLIGIV 125

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D                    +     +S+ +GE L+ L N + S L       P  
Sbjct: 126 TKIDKVPKDRVAAQLLAVSELMGPDAEIVPVSATSGEQLDVLTNVLVSQLPPGPAYYPDG 185

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
             + +     +++ +R   +  + + +    +           + +++   D + L+D+
Sbjct: 186 ELTDEPEEVLMAELIREAALEGVRD-ELPHSLAVV--------IDEVSQREDRDDLIDV 235


>gi|306843975|ref|ZP_07476570.1| GTP-binding proten HflX [Brucella sp. BO1]
 gi|306275730|gb|EFM57454.1| GTP-binding proten HflX [Brucella sp. BO1]
          Length = 472

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 99/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 148 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 204

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 205 KILRIKRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 263

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V + DT G             + T  EV  ADLIL +++I+ 
Sbjct: 264 FATLDPTLRRIRLPHGETVILLDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 323

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 324 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAAGSEEGRPIP 383

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 384 VSAITGEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 421


>gi|168039777|ref|XP_001772373.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676360|gb|EDQ62844.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 425

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 30/296 (10%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ +  +  +L  L   W          ++      ++ +V     +  +  
Sbjct: 120 AATREATLQVDLAQLEYQLPRLTRMWTHLERQAGGLVKGM--GEKQIEVDKRILRSQIAQ 177

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +    + +  H  Q +          I ++G++NAGKS+L N L+   V +  D    T 
Sbjct: 178 LKKQLDTVRGHRQQYRDRRASVPIPVISLVGYTNAGKSTLLNRLSGAGV-LAEDRLFATL 236

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D  T  ++L  G     +DT G  +          + T  E+ ++ L+L + +I+     
Sbjct: 237 DPTTRRVELPNGKECLFTDTVGFIQKLPTQLVAAFRATLEEISDSSLLLHVMDISHPMAD 296

Query: 315 SFPK------------NIDFIFIGTKSD--------LYSTYTEEYDHLISSFTGEGLEEL 354
              +            +I ++ +  K D                    IS+ TGEG+EE 
Sbjct: 297 QQREAVDNVLADLDVGHIPYLCVWNKFDKAKDPKLLKLEAAKRGDVVCISALTGEGMEEF 356

Query: 355 INKIKSILSNKFKKLPFSIPS------HKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
              ++S L +   ++   +P       +  H   + +   Y +  +L +    L +
Sbjct: 357 YEAVESRLKDLMVRVEAVVPYGQGELVNLIHRLGIVELEEYTDRGTLVKAHVPLAL 412


>gi|255263172|ref|ZP_05342514.1| GTP-binding protein HflX [Thalassiobium sp. R2A62]
 gi|255105507|gb|EET48181.1| GTP-binding protein HflX [Thalassiobium sp. R2A62]
          Length = 452

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 99/263 (37%), Gaps = 26/263 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ M  +S + + L   W                   + +    +  + L 
Sbjct: 123 RARTREGVLQVEMAALSYQRTRLVRAWTHLERQRGGLGFVGGPGETQIEADRRAIDDQLV 182

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +      +    +  +          + ++G++NAGKS+LFN L   +V    D+   T
Sbjct: 183 RLRKQLGKVEKTRALHRSARAKVPFPIVALVGYTNAGKSTLFNRLTGAEV-FAKDMLFAT 241

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     +DL  G  + +SDT G             + T  EV +ADLIL +++I+S   
Sbjct: 242 LDPTMRKVDLPTGDEIILSDTVGFISDLPTELVASFRATLEEVLDADLILHVRDISSADT 301

Query: 313 ------------EISFPKNIDFIFIGTKSDLY----------STYTEEYDHLISSFTGEG 350
                       ++   ++   + +  K D            ++  ++   + SS TGEG
Sbjct: 302 HEQSRDVMEILTKLGVGQDAPLLEVWNKIDQVELDVRKGLNTASDRDDAIFVTSSVTGEG 361

Query: 351 LEELINKIKSILSNKFKKLPFSI 373
           ++ L+  I  IL+   K    ++
Sbjct: 362 MDPLLAAISDILNAAMKIETLTL 384


>gi|256375392|ref|YP_003099052.1| GTP-binding protein Era [Actinosynnema mirum DSM 43827]
 gi|255919695|gb|ACU35206.1| GTP-binding protein Era [Actinosynnema mirum DSM 43827]
          Length = 298

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 27/230 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+    +G  NAGKS+L NAL    VAI +  P TTR  +   +  E   + + DT 
Sbjct: 4   YRSGF-ACFVGRPNAGKSTLTNALVGTKVAITSSKPQTTRHTIRGIVHREDGQLILVDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFI 325
           G+     ++ +             D++      + K          +     K    I I
Sbjct: 63  GLHRPRTLLGQRLNDLVRETWSEVDVVGFCVPADQKVGPGDKFIAAELAKIAKRTPVIGI 122

Query: 326 GTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            TK+DL                        +S+  G  ++ L + +   L       P  
Sbjct: 123 VTKTDLVPQQQVLEQLIALQEVMEFAEIIPVSAVDGYQVDTLSDLLLGKLPEGPPLYPDG 182

Query: 373 IPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL--RLASVSLGKI 419
             + +     +++ +R   +  + +E    + ++ E +  R     L  I
Sbjct: 183 ELTDEPEQTLVAELIREAALEGVRDELPHSIAVVVEEMLPREGRDDLVDI 232


>gi|118579211|ref|YP_900461.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379]
 gi|118501921|gb|ABK98403.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379]
          Length = 665

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 77/184 (41%), Gaps = 22/184 (11%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
              G+ ++   ++V++G+ N GKS LFNAL    V  V++ PGT+ +V   +  ++G   
Sbjct: 12  SNRGDTLK---RVVLVGNPNVGKSVLFNALTGAYVT-VSNYPGTSVEVSRGNATIQGRSW 67

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFI 323
           ++ DT G+     I E+E + R  +  E  D++L + +  + + +           +  I
Sbjct: 68  QVIDTPGMYSIHTITEEERVAREIILHETPDVVLHVLDARNLERMLAMTIQLIEAGLPVI 127

Query: 324 FIGTKSDLYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            +    D       + D               ++    GL+++ + + S  S K    P 
Sbjct: 128 LVVNIMDEAERMGLKIDLNLLQERLGIPVIGAATARKRGLDQIRSALASYASGKEGAAPM 187

Query: 372 SIPS 375
             P 
Sbjct: 188 QFPY 191


>gi|119026136|ref|YP_909981.1| GTP-binding protein [Bifidobacterium adolescentis ATCC 15703]
 gi|118765720|dbj|BAF39899.1| GTP-binding protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 498

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 93/258 (36%), Gaps = 29/258 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + + I  L+  I+        K G   R G   + ++G++NAGKSSL N L   
Sbjct: 241 EMDRRVIRSRIAKLRRQIAQMAPARDVKRGARRRFGLPTVAVVGYTNAGKSSLTNRLTGS 300

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G L    DT G          E  K T  EV +ADLI
Sbjct: 301 AELVENALFATLDTAVRRAKAKDGRLYAYVDTVGFVRRLPTQLIEAFKSTLEEVADADLI 360

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           + + + +                +I   + I  I    K+D       E         ++
Sbjct: 361 VHVVDGSHPDPFSQIDAVNDVLSDIDGVETIPTIVAFNKADRMDEAARERVEALMPDAYI 420

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+F+GEG+E L  K++S+L      +   +P     L    +    +      +    L
Sbjct: 421 VSAFSGEGVEALREKVESMLPTPNVHVEALLPYAAGSLMSRVREYGRVVNVEYRDDGMML 480

Query: 403 D------IIAENLRLASV 414
           +      + A+ +  A  
Sbjct: 481 EAEVDDQLAAQIVEQAID 498


>gi|73667167|ref|YP_303183.1| GTP-binding protein Era [Ehrlichia canis str. Jake]
 gi|123614857|sp|Q3YRS0|ERA_EHRCJ RecName: Full=GTPase Era
 gi|72394308|gb|AAZ68585.1| Small GTP-binding protein domain:GTP-binding protein Era [Ehrlichia
           canis str. Jake]
          Length = 296

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 22/211 (10%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G +NAGKS+L N L  + VA VT    TTR  +   L+ E   +   DT GI     
Sbjct: 12  AIVGTTNAGKSTLINMLVGRKVAAVTPKVQTTRVRMHAVLNNENVQLIFIDTPGIFSPKT 71

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSDLYST 334
            +EK  +K  ++ ++  + ++LL ++ +      +K IS  K  NI+ I +  K D+ S 
Sbjct: 72  KLEKFIVKHAWMSLKGIENVILLLDVKNYLNKHIEKIISRIKQSNINAILVVNKIDMVSQ 131

Query: 335 YTEEYDHLI-------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
              +                  S+    GL  LIN +  I  +     P    S     +
Sbjct: 132 ALVDKAIEYMYSLHNFSKTFTISALHDIGLNRLINYLCEISPSGPWLYPEGQISDAPLKF 191

Query: 382 HLSQTVRYLEMASL-NEKDCGLDIIAENLRL 411
            +++  R     SL +E    L ++ E L  
Sbjct: 192 FIAEITREKLFLSLHHELPYSLSVVTEALEE 222


>gi|227874779|ref|ZP_03992932.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35243]
 gi|227844554|gb|EEJ54710.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35243]
          Length = 303

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 27/209 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+ + +LG  N GKS+L N +  + +AI +  P TTR V    +   G+ + + D
Sbjct: 12  EDFRAGF-VAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVSRGIVHRPGFQLVLVD 70

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI-----------SFPKNIDF 322
           T GI     ++ +    R       AD+ LL+  + + +EI                I  
Sbjct: 71  TPGIHRPRTLLGQRLNDRVEEA--QADVDLLVFCVPADQEIGPGDRRIVEKQLRANRIPA 128

Query: 323 IFIGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           + + TK+D             L   Y       +S+  G+ +E LI+ +  ++       
Sbjct: 129 LAVVTKTDVATPNQIAAQLLALNELYDFREIVPVSAVQGKQVELLIDLLGGLMPLSAPLY 188

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           P    S +     +++ +R   +  L ++
Sbjct: 189 PAGQDSDEDDEVMIAELIREAALEGLGQE 217


>gi|50086023|ref|YP_047533.1| GTP-binding protein [Acinetobacter sp. ADP1]
 gi|49531999|emb|CAG69711.1| GTP-binding protein [Acinetobacter sp. ADP1]
          Length = 444

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 100/271 (36%), Gaps = 43/271 (15%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + +   ++ LK+ +         G   R       + ++G++NAGKS+LFN LA  DV
Sbjct: 165 DRRLIRIRMIQLKDKLDKVQQTRLQGRAARQKAAIPTVSLVGYTNAGKSTLFNHLANSDV 224

Query: 245 AIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D     LD +G   V ++DT G          E  K T  E   A L+L
Sbjct: 225 -YAADQLFATLDPTLRRLDWDGIGTVVLADTVGFVRNLQHDLIESFKATLEETLEATLLL 283

Query: 304 LLKEINSKKEISFPK-----------NIDFIFIGTKSD--------LYSTYTEEYDHLIS 344
            + + +S   +   +           +   + +  K D        +Y+   E     +S
Sbjct: 284 HIIDSSSPDMLEQIEAVEGVLKEIGADAPVLRVYNKIDVSGDEAKIIYARPHEPERVYVS 343

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHL------------SQTVRYLE 391
           + +G G++ L   ++  L  + +     + P H +    L             Q   +L 
Sbjct: 344 AHSGAGIDLLKKAVQECLMGQRQAFDLILKPIHGKLRTQLYNLNVIDSEHFDDQGQLHLH 403

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGC 422
           +    +K   L      +R A +SL +I G 
Sbjct: 404 VVMAPQKLEQL------IRQAHLSLDEILGE 428


>gi|221639215|ref|YP_002525477.1| GTP-binding protein, HSR1-related [Rhodobacter sphaeroides KD131]
 gi|221159996|gb|ACM00976.1| GTP-binding protein, HSR1-related [Rhodobacter sphaeroides KD131]
          Length = 447

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 84/229 (36%), Gaps = 31/229 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   ++ ++  +   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 190 EADRRAIDEQVIRIRRQLDKVVKTRELHRASRRKVPFPIVALVGYTNAGKSTLFNRMTGA 249

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 250 DV-LAKDMLFATLDPTMRGVTLPSGRKVILSDTVGFISDLPTQLVAAFRATLEEVLEADL 308

Query: 302 ILLLKEINSKKEISFPKN-------------IDFIFIGTKSDLYS----------TYTEE 338
           IL +++I   +      +                + +  K DL                E
Sbjct: 309 ILHVRDIAHPETAEQAADVAEILQSLGVKGATPQVEVWNKLDLVEGATHEQLLAQAAKSE 368

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLS 384
               +S+ TGEGL +L+  + +    +  +   ++      +R   H  
Sbjct: 369 TIFALSALTGEGLPDLLEAVSATFDEEKTERQLTVGFADGRRRAWLHAE 417


>gi|160893538|ref|ZP_02074323.1| hypothetical protein CLOL250_01090 [Clostridium sp. L2-50]
 gi|156864933|gb|EDO58364.1| hypothetical protein CLOL250_01090 [Clostridium sp. L2-50]
          Length = 437

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 28/242 (11%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
             D L+ +   I       ++ ++     ++ ++ +      +       +  +  R G 
Sbjct: 154 MRDSLSRLGGGIGTRGPGEKKLEIDRRVIRDRISKLKADLRQVEGR-RTEQRKQRNRTGI 212

Query: 221 KIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
            +V I+G++NAGKS+L N L    V +  D    T D  T +  L  G  V  +DT G  
Sbjct: 213 PVVSIVGYTNAGKSTLLNKLTGAGV-LEEDKLFATLDPATRNAVLPAGQQVLFTDTVGFI 271

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------------EISFPKNIDFI 323
                   E  K T  E + +D+IL + + +                   +   K+   I
Sbjct: 272 RKLPHHLVEAFKSTLEEAKYSDVILHVVDASDPNWDRNMETVYATLRQLNVDEEKDHPII 331

Query: 324 FIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            +  K D         +      +    +S+ TG G+++L+ +++ +L  +   +  +  
Sbjct: 332 TVFNKIDKLPEGGDISMIKDLRADRMVYLSAKTGAGIDDLLVQVEEVLREQKTYIRHTFA 391

Query: 375 SH 376
             
Sbjct: 392 YQ 393


>gi|69249005|ref|ZP_00604848.1| GTP-binding protein, HSR1-related [Enterococcus faecium DO]
 gi|257879593|ref|ZP_05659246.1| GTP-binding protein [Enterococcus faecium 1,230,933]
 gi|257882612|ref|ZP_05662265.1| GTP-binding protein [Enterococcus faecium 1,231,502]
 gi|257885035|ref|ZP_05664688.1| GTP-binding protein [Enterococcus faecium 1,231,501]
 gi|257890261|ref|ZP_05669914.1| GTP-binding protein [Enterococcus faecium 1,231,410]
 gi|257893445|ref|ZP_05673098.1| GTP-binding protein [Enterococcus faecium 1,231,408]
 gi|258616796|ref|ZP_05714566.1| GTP-binding protein [Enterococcus faecium DO]
 gi|260559742|ref|ZP_05831922.1| GTP-binding protein [Enterococcus faecium C68]
 gi|293557247|ref|ZP_06675795.1| GTP-binding protein HflX [Enterococcus faecium E1039]
 gi|293559761|ref|ZP_06676282.1| GTP-binding proten HflX [Enterococcus faecium E1162]
 gi|293567603|ref|ZP_06678947.1| GTP-binding proten HflX [Enterococcus faecium E1071]
 gi|294623235|ref|ZP_06702106.1| GTP-binding proten HflX [Enterococcus faecium U0317]
 gi|314938921|ref|ZP_07846188.1| GTP-binding protein HflX [Enterococcus faecium TX0133a04]
 gi|314943856|ref|ZP_07850589.1| GTP-binding protein HflX [Enterococcus faecium TX0133C]
 gi|314948096|ref|ZP_07851497.1| GTP-binding protein HflX [Enterococcus faecium TX0082]
 gi|314951638|ref|ZP_07854683.1| GTP-binding protein HflX [Enterococcus faecium TX0133A]
 gi|314993856|ref|ZP_07859190.1| GTP-binding protein HflX [Enterococcus faecium TX0133B]
 gi|314996698|ref|ZP_07861721.1| GTP-binding protein HflX [Enterococcus faecium TX0133a01]
 gi|68194312|gb|EAN08827.1| GTP-binding protein, HSR1-related [Enterococcus faecium DO]
 gi|257813821|gb|EEV42579.1| GTP-binding protein [Enterococcus faecium 1,230,933]
 gi|257818270|gb|EEV45598.1| GTP-binding protein [Enterococcus faecium 1,231,502]
 gi|257820887|gb|EEV48021.1| GTP-binding protein [Enterococcus faecium 1,231,501]
 gi|257826621|gb|EEV53247.1| GTP-binding protein [Enterococcus faecium 1,231,410]
 gi|257829824|gb|EEV56431.1| GTP-binding protein [Enterococcus faecium 1,231,408]
 gi|260074410|gb|EEW62732.1| GTP-binding protein [Enterococcus faecium C68]
 gi|291589704|gb|EFF21508.1| GTP-binding proten HflX [Enterococcus faecium E1071]
 gi|291597342|gb|EFF28522.1| GTP-binding proten HflX [Enterococcus faecium U0317]
 gi|291600611|gb|EFF30915.1| GTP-binding protein HflX [Enterococcus faecium E1039]
 gi|291606309|gb|EFF35722.1| GTP-binding proten HflX [Enterococcus faecium E1162]
 gi|313589136|gb|EFR67981.1| GTP-binding protein HflX [Enterococcus faecium TX0133a01]
 gi|313591666|gb|EFR70511.1| GTP-binding protein HflX [Enterococcus faecium TX0133B]
 gi|313596234|gb|EFR75079.1| GTP-binding protein HflX [Enterococcus faecium TX0133A]
 gi|313597474|gb|EFR76319.1| GTP-binding protein HflX [Enterococcus faecium TX0133C]
 gi|313641795|gb|EFS06375.1| GTP-binding protein HflX [Enterococcus faecium TX0133a04]
 gi|313645432|gb|EFS10012.1| GTP-binding protein HflX [Enterococcus faecium TX0082]
          Length = 409

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 112/284 (39%), Gaps = 21/284 (7%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L  L GQ    L+ +   I        + +      +  +
Sbjct: 109 MRARSKEGKLQVELAQLEYLLPRLVGQ-GKTLSRLGGGIGTRGPGETKLETDRRHIRNKI 167

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             +     ++ +H  + +        ++I ++G++NAGKS++ N L + D     D    
Sbjct: 168 FAVKKELKEVEAHRERNRQKRKNSEIFQIGLIGYTNAGKSTILNLLTQAD-TYSKDQLFA 226

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D LT      EG+ + ++DT G  +       +    T  E +N DL+L + + +S  
Sbjct: 227 TLDPLTKRWRFAEGFEITVTDTVGFIQDLPTQLIDAFHSTLEESQNMDLLLHVVDASSPD 286

Query: 313 EISFP------------KNIDFIFIGTKSDLYS----TYTEEYDHLISSFTGEGLEELIN 356
            I               K +  + +  K+D       T T   + LIS+ T EG   LI 
Sbjct: 287 RILQEQTVLKLMDELNMKEMPILTVYNKADQIDPAMFTPTLFPNVLISTQTKEGKMALIE 346

Query: 357 KIKSILSNKFKKLPFSIPSHKRH-LYHLSQTVRYLEMASLNEKD 399
            IK  L         S+PS++   L  L +    L+ A + E +
Sbjct: 347 AIKRQLMELMTPYTLSVPSNEGQKLSELRRQTMVLDEAYMEETN 390


>gi|300724127|ref|YP_003713444.1| GTPase [Xenorhabdus nematophila ATCC 19061]
 gi|297630661|emb|CBJ91326.1| GTPase believed to be involved in coordination of cell cycle,
           energy metabolism, cell division [Xenorhabdus
           nematophila ATCC 19061]
          Length = 301

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTKGAYQTIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFPKN--IDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E      + +  ++  +N     +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTHWTPDDEMVVNKLRNLRCPVLLAINKVDNVT 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T    H               IS+  G  ++ +   ++  +       P    + +  
Sbjct: 131 DKTILLPHIGFLSQQMNFIDVVPISAEKGMNVDTIAKLVREHMPQADHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|27905016|ref|NP_778142.1| putative GTP-binding protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46395803|sp|Q89A14|DER_BUCBP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA
 gi|27904414|gb|AAO27247.1| putative GTP-binding protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 462

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 21/171 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             I ++G +N GKS+LFN L   ++ A+ ++    TRD     + +    + + DT GI 
Sbjct: 3   ITIALIGRTNVGKSTLFNKLTGNRNDALASNHASLTRDRKHGFIIVNNTKIVLIDTPGIN 62

Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNI--DFIFIGT 327
           E        +KE  ++    ++ ADL+ L+    +K      + I   +        +  
Sbjct: 63  EDSKKKISLDKEIFEQVKFSIKQADLVCLVVSARNKLMHKDVEIIEMLRKFQKKIFLLVN 122

Query: 328 KS-----DLYS----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           K      DL      T      H IS+  G G++ L N I S  +++   L
Sbjct: 123 KIEGLNFDLVKYEFYTLGLRNMHFISATNGIGIDFLTNNICSFFTSQKNSL 173



 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 101/298 (33%), Gaps = 52/298 (17%)

Query: 118 FENGKIDLLEAESLADLISSETEMQRR-----LSMEGMSGE---LSSLYGQWIDKLTH-- 167
           FE  K  + +A+ +  ++S+  ++  +       +     +   L +        L    
Sbjct: 76  FEQVKFSIKQADLVCLVVSARNKLMHKDVEIIEMLRKFQKKIFLLVNKIEGLNFDLVKYE 135

Query: 168 -----------IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG--E 214
                      I +     +DF        F+S++          DI   I+  K    +
Sbjct: 136 FYTLGLRNMHFISATNGIGIDFLTNNICSFFTSQKNSLYKKNKDFDIIYSITNDKKNCCQ 195

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
            +    KI I+G  N GKS+L N L  +   IV   PGTTRD     +          DT
Sbjct: 196 NLNKTIKIAIIGKPNVGKSTLINVLLNEKRVIVDSNPGTTRDSNWSLIIRNKINYMFFDT 255

Query: 275 AGIRETDDI---VEKEGIKRTFL-------------EVEN-ADLILLLKEINSKKEISFP 317
           AGIR+ + I   +EK  + +T                ++  +D    L        +   
Sbjct: 256 AGIRKKNKISTYIEKISVHKTLKILNLVHVVLLVIDAMDGFSDQDFYLL------NLIIK 309

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                I I  K+D  S      + +  +     + +LI+ +K    +    +  SI  
Sbjct: 310 NGCSVIIILNKNDKLS------EKMRINVLNSKMLKLISHVKCHFISAKHNMGTSIIF 361


>gi|255263213|ref|ZP_05342555.1| GTP-binding protein Era [Thalassiobium sp. R2A62]
 gi|255105548|gb|EET48222.1| GTP-binding protein Era [Thalassiobium sp. R2A62]
          Length = 307

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 28/184 (15%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 9   RAGF-IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGQSQLVFVDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK------NIDFIFIG 326
           + +    +++  +   +    +AD+++L+ E    I    E           N       
Sbjct: 68  LFKPRRRLDRAMVAAAWSGASDADVVVLMIESHRGITEGVEAILEALEERGGNAPVALAL 127

Query: 327 TKSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         L     + +D     +IS+  G G    ++ +++ L+ +  K PF  
Sbjct: 128 NKIDRVKSEVLLGLTKEMNDRFDFAETFMISAEKGHG----VDTLRTWLAGRIPKSPFLY 183

Query: 374 PSHK 377
           P  +
Sbjct: 184 PEDQ 187


>gi|256369537|ref|YP_003107047.1| GTP-binding protein, putative [Brucella microti CCM 4915]
 gi|255999699|gb|ACU48098.1| GTP-binding protein, putative [Brucella microti CCM 4915]
          Length = 472

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 148 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 204

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 205 KILRIKRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 263

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 264 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 323

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 324 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAARSEEGRPIP 383

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 384 VSAITGEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 421


>gi|254706704|ref|ZP_05168532.1| GTP1/OBG [Brucella pinnipedialis M163/99/10]
 gi|254710188|ref|ZP_05171999.1| GTP1/OBG [Brucella pinnipedialis B2/94]
 gi|256031682|ref|ZP_05445296.1| GTP1/OBG [Brucella pinnipedialis M292/94/1]
 gi|256159838|ref|ZP_05457571.1| GTP1/OBG [Brucella ceti M490/95/1]
 gi|256255084|ref|ZP_05460620.1| GTP1/OBG [Brucella ceti B1/94]
 gi|260168816|ref|ZP_05755627.1| GTP1/OBG [Brucella sp. F5/99]
 gi|261222277|ref|ZP_05936558.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261314166|ref|ZP_05953363.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317745|ref|ZP_05956942.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261758301|ref|ZP_06002010.1| GTP1/OBG [Brucella sp. F5/99]
 gi|265988776|ref|ZP_06101333.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265998241|ref|ZP_06110798.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|260920861|gb|EEX87514.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261296968|gb|EEY00465.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261303192|gb|EEY06689.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261738285|gb|EEY26281.1| GTP1/OBG [Brucella sp. F5/99]
 gi|262552709|gb|EEZ08699.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264660973|gb|EEZ31234.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
          Length = 472

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 148 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 204

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 205 KILRIKRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 263

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 264 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 323

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 324 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAAGSEEGRPIP 383

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 384 VSAITGEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 421


>gi|57236971|ref|YP_178772.1| GTP-binding protein Era [Campylobacter jejuni RM1221]
 gi|81353813|sp|Q5HVB3|ERA_CAMJR RecName: Full=GTPase Era
 gi|57165775|gb|AAW34554.1| GTP-binding protein Era [Campylobacter jejuni RM1221]
 gi|315058076|gb|ADT72405.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni S3]
          Length = 291

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKE----ISFPKNIDFIFIGTKSD 330
           G+ E+   + +  ++     + + D+IL +  + +S K+    +S    +  I    K D
Sbjct: 60  GLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENFLSLNPQVPHIIALNKVD 119

Query: 331 LYSTYT 336
           L    T
Sbjct: 120 LTDNAT 125


>gi|18309090|ref|NP_561024.1| GTP-binding protein [Clostridium perfringens str. 13]
 gi|18143765|dbj|BAB79814.1| probaqble GTP-binding protein [Clostridium perfringens str. 13]
          Length = 454

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 26/164 (15%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L +     S+ ++   G        I + G +N+GKSS+ NAL  +++++V+D  GTT 
Sbjct: 7   HLAIVEKFMSNFNETPRGSR----IHISLFGKTNSGKSSIINALTGQNISLVSDFKGTTT 62

Query: 256 DVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---- 310
           D +   ++L     V   DTAG  +  +I  K  +++T   V   D+ L+   ++     
Sbjct: 63  DPVYKAMELLPLGPVVFVDTAGFDDEGEIG-KLRVEKTEEVVGKTDVALITLSLSEILEA 121

Query: 311 -----------KKEISFPK-----NIDFIFIGTKSDLYSTYTEE 338
                       KEI +           I +  K DL      E
Sbjct: 122 IKSNIEFKDMLSKEILWLNKLKKAKKPAILVINKCDLVPNKLIE 165


>gi|172034988|ref|YP_001801489.1| hypothetical protein cce_0071 [Cyanothece sp. ATCC 51142]
 gi|171696442|gb|ACB49423.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 537

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 107/244 (43%), Gaps = 30/244 (12%)

Query: 193 LNDILFLKNDISS---HISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVT 248
              +  +++ ++         ++ E +  G +K+VI G  +AGK+SL NAL  + +  V 
Sbjct: 101 RRQLETIQDKVAQKALLNRSQEIAENLNRGEFKVVIFGTGSAGKTSLVNALLGEIIGQVQ 160

Query: 249 DIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLL 305
              GTT+   T  L L+G    + I+DT GI E   +  E+E + R       ADL+L +
Sbjct: 161 ATMGTTKIGETYALKLKGLSREILITDTPGILEAGIEGTEREKLARQL--ATEADLLLFV 218

Query: 306 KEINSKK------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
            + + ++      +I        + +  K DLY+   E           + L++L  ++K
Sbjct: 219 VDNDLRQSEYKPLQILVDIGKRSLLVFNKVDLYTEEEE----------TQILQQLRERVK 268

Query: 360 SILSNK----FKKLPFSIPSHKRHLYHLS-QTVRYLEMASLNEKDCGLDIIAENLRLASV 414
           S +  +        P + PS        S   +  ++  +   +  G D+IA+N+ L S 
Sbjct: 269 SFIPEQDVISVAANPQTFPSQTGQTIQPSPDILPLIKRLATILRAEGEDLIADNILLQSQ 328

Query: 415 SLGK 418
            LG+
Sbjct: 329 RLGE 332


>gi|121610178|ref|YP_997985.1| GTP-binding protein Era [Verminephrobacter eiseniae EF01-2]
 gi|121554818|gb|ABM58967.1| GTP-binding protein Era [Verminephrobacter eiseniae EF01-2]
          Length = 340

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 7/141 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +T             DT G +   
Sbjct: 50  IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGICTRAQTQFVFVDTPGFQTRH 109

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYST 334
                + + +  +  + +  LIL + E       ++K    F   +  + +  K DL   
Sbjct: 110 ANALNKSLNKAVVGALGDVSLILFVVEAGNFTLADAKVLSLFKPGVATLLLANKLDLVPR 169

Query: 335 YTEEYDHLISSFTGEGLEELI 355
             +    L S        E +
Sbjct: 170 RADIAPWLQSMQERHPFAEFV 190


>gi|261417444|ref|YP_003251127.1| GTP-binding proten HflX [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373900|gb|ACX76645.1| GTP-binding proten HflX [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326172|gb|ADL25373.1| GTP-binding protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 398

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 89/256 (34%), Gaps = 26/256 (10%)

Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
             +++E+ +   ++       +  L G W          I         E       + +
Sbjct: 128 HAVTAESRLMVEVAQLQY--MMPRLTGAWTHLCRQHNGGIGTK---GPGETQLETDRRMI 182

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
              I  LK  +       +     RN  +++ I+G++NAGKS+L N L   DV  V D  
Sbjct: 183 RKRIQELKKKLEKIEDAREQQADKRNDIFQVGIVGYTNAGKSTLTNRLTGADV-YVEDKL 241

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
             T D  T  L L+G  + +SDT G          E  K T     +AD IL + + ++ 
Sbjct: 242 FATLDSTTRKLFLDGENIILSDTVGFIRKLPHNLIETFKSTLGVAAHADCILEVVDGSAP 301

Query: 312 K------------EISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLISSFTGEGLE 352
                        E    K+   + +  K ++ S                IS+    G+E
Sbjct: 302 DYRDHLEVTHKTLESIIDKDTPRLRVFNKVEVASEARRTELLQNYPDAIQISAKENIGME 361

Query: 353 ELINKIKSILSNKFKK 368
            L    K  L    +K
Sbjct: 362 RLRAAFKEQLERWHEK 377


>gi|302518983|ref|ZP_07271325.1| GTP-binding protein Era [Streptomyces sp. SPB78]
 gi|302427878|gb|EFK99693.1| GTP-binding protein Era [Streptomyces sp. SPB78]
          Length = 392

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+    +G  NAGKS+L NAL  + VAI ++ P TTR  +   +      + + DT G
Sbjct: 92  RAGF-ACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEAQLILVDTPG 150

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++ +             D+I      + K         KE++  K    + I T
Sbjct: 151 LHKPRTLLGERLNDVVRATWAEVDVIGFCLPADQKIGPGDRFIAKELAGIKRTPKVAIVT 210

Query: 328 KSDLYST 334
           K+DL  +
Sbjct: 211 KTDLVDS 217


>gi|254714186|ref|ZP_05175997.1| GTP1/OBG [Brucella ceti M644/93/1]
 gi|254717621|ref|ZP_05179432.1| GTP1/OBG [Brucella ceti M13/05/1]
 gi|261219457|ref|ZP_05933738.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261321953|ref|ZP_05961150.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260924546|gb|EEX91114.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294643|gb|EEX98139.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 472

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 148 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 204

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 205 KILRIKRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 263

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 264 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 323

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 324 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAAGSEEGRPIP 383

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 384 VSAITGEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 421


>gi|326333217|ref|ZP_08199464.1| GTP-binding protein HflX [Nocardioidaceae bacterium Broad-1]
 gi|325948861|gb|EGD40954.1| GTP-binding protein HflX [Nocardioidaceae bacterium Broad-1]
          Length = 494

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 62/382 (16%), Positives = 126/382 (32%), Gaps = 58/382 (15%)

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK-IDLLEA 128
           P P ++ G    E         +  I+        +          R  E+   + +++ 
Sbjct: 123 PDPATYIGRGKVE--------ALKEIVAATGADTVIADGELAPSQLRNLEDRTGVKVVDR 174

Query: 129 ESLADLISSET----EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            +L   I ++     E Q ++ +  ++  +      W   L+       A          
Sbjct: 175 TALILDIFAQHAKSREGQAQVELAQLN-YMKQRLRGWGGNLSRQAGGRVAGGAGIGGRGP 233

Query: 185 QNFSSKEVLNDILFLKNDISSHIS------QGKLGEIIRNGYK-IVILGHSNAGKSSLFN 237
                +     I      ++  +         K  +  R+    + I G++NAGKSSL N
Sbjct: 234 GETKIETDRRRINTKIAKLNRELKAMKGTRDTKRADRKRHQIPAVAIAGYTNAGKSSLLN 293

Query: 238 ALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
            L       + A+   +  TTR   T     +G +  +SDT G          E  + T 
Sbjct: 294 RLTGAGVLVEDALFATLDPTTRRTTTE----DGRVYTMSDTVGFVRHLPHQLVEAFRSTL 349

Query: 294 LEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY------ 335
            EV +ADL++ + + +                     ++  + +  K+D+          
Sbjct: 350 EEVADADLVVHVVDGSHPDPEGQLAAVREVFAEIGAGDVPELVVINKADIADPLVISRLL 409

Query: 336 -TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL---YHLSQTVRYLE 391
             E +   +S+ TGEG++  I  +++ L     +    +P  +  L    H    + +LE
Sbjct: 410 RAEPHSVAVSAKTGEGIDAAIKAVENDLPRPGVEFSALVPYERGDLVNRIHQHGEIDHLE 469

Query: 392 MASL-------NEKDCGLDIIA 406
             +           D   ++ A
Sbjct: 470 HTAEGTVVKGRANADLAGELAA 491


>gi|308177460|ref|YP_003916866.1| GTP-binding protein Era [Arthrobacter arilaitensis Re117]
 gi|307744923|emb|CBT75895.1| GTP-binding protein Era [Arthrobacter arilaitensis Re117]
          Length = 320

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 12/159 (7%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           + ++     E  R+G+    +G  NAGKS+L NAL  + VAI +  P TTR  +   +  
Sbjct: 6   NLLASSGWPEGFRSGF-TSFVGRPNAGKSTLTNALVGQKVAITSAKPQTTRHTIRGIVHR 64

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS 315
           E   + + DT G+     ++ +         +   D I      N K          +++
Sbjct: 65  EDAQLILVDTPGLHRPRTLLGQRLNDLVADTLSEVDAIGFCIPANEKIGPGDRFIATQLA 124

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
             +    I + TK+DL     E+    + +    G +  
Sbjct: 125 QLQRKPIIALVTKADLVDR--EQLAQQLIAVAEMGTQTF 161


>gi|262196910|ref|YP_003268119.1| GTP-binding protein Era [Haliangium ochraceum DSM 14365]
 gi|262080257|gb|ACY16226.1| GTP-binding protein Era [Haliangium ochraceum DSM 14365]
          Length = 340

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 41/218 (18%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID--LDLEGY- 267
              E +R G+   ILG  NAGKS+L N +    +  V+  P TTR+ +     + L    
Sbjct: 24  DANEQVRTGF-CAILGLPNAGKSTLLNQVLNLRLVAVSPKPQTTRNRILGVHGVTLPERG 82

Query: 268 -------LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-- 318
                   +   DT GI++    + +    +      +AD+ LL+ ++    +    +  
Sbjct: 83  DNPEQPVQIIFVDTPGIQQGPGALRRYMRDQALGAAGDADVALLMIDLADPAQRDPARFE 142

Query: 319 --------------NIDFIFIGTKSDLY--------------STYTEEYDHLISSFTGEG 350
                             +    K D                +T   +    +S+ TG+G
Sbjct: 143 DRDIAALLATLRAGKAPVVLALNKVDTVRSKDALLPILEAYGATGIADEVVPMSAKTGDG 202

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           +  L++ +   L    +  P  + + +   +  ++ +R
Sbjct: 203 VGRLVDAVGRRLPMGPRLFPEDMVTDRAERFLAAELIR 240


>gi|146292263|ref|YP_001182687.1| GTP-binding protein Era [Shewanella putrefaciens CN-32]
 gi|145563953|gb|ABP74888.1| GTP-binding protein Era [Shewanella putrefaciens CN-32]
          Length = 338

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 28/215 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +          +   DT G+   +
Sbjct: 47  VAIIGRPNVGKSTLLNRLLGQKISITSKKPQTTRHRIMGIHTDGPKQIVFIDTPGLHIEE 106

Query: 282 DIVEKEGIKRTFLEVENADL--ILLLKEI---NSKKEISFPK------NIDFIFIGTKSD 330
                  + R       AD+  ++ + +     +  E+   K          I    K D
Sbjct: 107 QRAINRLMNRA-AASSLADVAMVIFVVDGMTWTADDEMVLSKLRRGGEERKTILAINKVD 165

Query: 331 --------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                         +   Y  +    IS+  G  ++ ++    + L       P    + 
Sbjct: 166 NIKDKEALFPYLEEVAKKYPFDEILPISASKGTNVQRILELAAASLPQNPFFFPEDYVTD 225

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +   +  S+ VR   M  L + +   D     +  
Sbjct: 226 RSQRFMASEIVREKLMRFLGD-ELPYD-ATVEIEQ 258


>gi|119471906|ref|ZP_01614214.1| GTP-binding protein era [Alteromonadales bacterium TW-7]
 gi|119445279|gb|EAW26569.1| GTP-binding protein era [Alteromonadales bacterium TW-7]
          Length = 310

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N + ++ V+I +  P TTR  +        +     DT G+  E 
Sbjct: 21  IAIVGRPNVGKSTLLNEIIEQKVSITSRKPQTTRHRIMGIHTEGKHQAVYVDTPGLHIEE 80

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +LI+ + E     +  E+   K        + +  K D   
Sbjct: 81  KRAINRLMNRAASSSIGDVELIIFVVEGTHWTADDEMVLNKVSQSGKPVMLVINKIDQVK 140

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  H+               S+  G+ ++ + +++   L       P    + +  
Sbjct: 141 DRDLVLPHMKLLGDKFDFVSIMPVSAKQGKNIDLIKDEVTKRLPPCEFYFPDDYVTDRSM 200

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 201 RFMAAEVIR 209


>gi|62320818|dbj|BAD93758.1| hypothetical protein [Arabidopsis thaliana]
          Length = 370

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 30/120 (25%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277
           ++ I+G  N GKS+LFN L  ++ AIV D PG TRD L            + DT G+   
Sbjct: 160 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGVMTV 219

Query: 278 -RETDDIVE---------KEGI-----------------KRTFLEVENADLILLLKEINS 310
            +    ++E          EGI                 K+    V+ + +I+ + +  +
Sbjct: 220 SKSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVDGQA 279


>gi|170744646|ref|YP_001773301.1| GTP-binding protein Era [Methylobacterium sp. 4-46]
 gi|168198920|gb|ACA20867.1| GTP-binding protein Era [Methylobacterium sp. 4-46]
          Length = 315

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 72/193 (37%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N+L    V+IV+    TTR ++          +   DT G
Sbjct: 21  RAGF-VALIGVPNAGKSTLLNSLVGSKVSIVSRKVQTTRALVRGIAIEGAAQIVFVDTPG 79

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           I      +++  +   +    +AD + LL +     +                 I +  K
Sbjct: 80  IFAPKRRLDRAMVTSAWSGAADADAVCLLVDARKGVDPEVEAVLGRLPELRRPKILVLNK 139

Query: 329 SDLYS-------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D+ +                 ++  ++S+ TG+G+ +L   +  ++       P    S
Sbjct: 140 IDVIARERLLDLAAALNGRLPFDHTFMVSALTGDGVADLRRVLAGLMPPGPWLYPEDQVS 199

Query: 376 HKRHLYHLSQTVR 388
                   ++  R
Sbjct: 200 DAPLRMLAAEITR 212


>gi|120403426|ref|YP_953255.1| GTP-binding protein, HSR1-related [Mycobacterium vanbaalenii PYR-1]
 gi|119956244|gb|ABM13249.1| GTP-binding protein HflX [Mycobacterium vanbaalenii PYR-1]
          Length = 482

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 85/237 (35%), Gaps = 31/237 (13%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK----DVA 245
           +E +  +     D+       + G        I I+G++NAGKSSL NAL       + A
Sbjct: 229 RERMAKLRREIKDMKKIRDTQRSGRRRTEIPSIAIVGYTNAGKSSLLNALTGAGVLVENA 288

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           +   +  TTR       D +G    ++DT G          E  + T  EV +A+L++ +
Sbjct: 289 LFATLEPTTR---RGQFD-DGRPFVLTDTVGFVRHLPTQLVEAFRSTLEEVVDAELLVHV 344

Query: 306 KEINSKKEISFPKN----------------IDFIFIGTKSDLYSTYTEEY-------DHL 342
            + +    ++                       + +  K+D     T             
Sbjct: 345 VDGSDVNPLAQINAVRQVINEVAAEYDIAPPPELLVVNKTDAADGVTLAQLRRALPGAVF 404

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           +S+ TG+GL+ L  ++  ++      +  +IP  +  L         ++     E+ 
Sbjct: 405 VSAHTGDGLDRLRARMAELVVPTDTVVDVTIPYSRGDLVARLHADGRIDATEHTERG 461


>gi|224009828|ref|XP_002293872.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970544|gb|EED88881.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 453

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 98/244 (40%), Gaps = 31/244 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRN--GYKI-VILGHSNAGKSSLFNALAKK 242
               + + + IL LK  I     Q  L    R   G  +  ++G++NAGKS+L N L K 
Sbjct: 157 EVDKRILRDRILVLKEKIDDVQKQRDLHRRGRKKGGLPVLALVGYTNAGKSTLLNCLTKA 216

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGY----LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            + +  +I   T D  T  + L GY     V ++DT G  +          + T  EV+ 
Sbjct: 217 GI-LAENILFATLDPTTRRVKLPGYKTHPEVLLTDTVGFIQKLPTQLVAAFRATLEEVKE 275

Query: 299 ADLILLLKEINS----KKEISFPK--------NIDFIFIGTKSDLYSTYTEEYDHL---- 342
           AD+++ + ++++    K+E S  K        +   + +  K DL      E        
Sbjct: 276 ADVLVHIVDVSNPCWRKQEDSVTKVLSEIGAGDKPTVRVFNKLDLLDKEDAELIKYEAAC 335

Query: 343 -------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
                  ISS TGEGL + +  ++  LS     +   +P    +  +L   V  +E+   
Sbjct: 336 SENFSVGISSLTGEGLSDFVAVVEDALSGLLVPIELELPYSCGNEINLIHEVGSIEVIDY 395

Query: 396 NEKD 399
            E  
Sbjct: 396 REMG 399


>gi|157414937|ref|YP_001482193.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 81116]
 gi|189037256|sp|A8FL79|ERA_CAMJ8 RecName: Full=GTPase Era
 gi|157385901|gb|ABV52216.1| GTP-binding protein ERA-like protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747576|gb|ADN90846.1| GTP-binding protein era-like protein [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931858|gb|EFV10813.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 327]
          Length = 291

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKE----ISFPKNIDFIFIGTKSD 330
           G+ E+   + +  ++     + + D+IL +  + +S K+    +S    +  I    K D
Sbjct: 60  GLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENFLSLNPQVPHIIALNKVD 119

Query: 331 LYSTYT 336
           L    T
Sbjct: 120 LTDNAT 125


>gi|289662800|ref|ZP_06484381.1| GTP-binding protein Era [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 285

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 72/197 (36%), Gaps = 22/197 (11%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDD 282
           ++G  N GKS+L NAL    V+IV++ P TTR  L          + + DT G+ RE   
Sbjct: 1   MIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKR 60

Query: 283 IVEKEGIKRTFLEVENADLILLLKEI--------------NSKKEISFPKNIDFIFIGTK 328
            + +   +     +E  D  +L+ E               +  +            +  K
Sbjct: 61  AMNRVMNRAARGSLEGVDAAVLVIEAGRWDEEDTLAFRVLSDAQVPVVLVVNKVDRLKDK 120

Query: 329 SDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           + L+    +          H IS+   +GLE L+  +  ++            + +   +
Sbjct: 121 TALFPFLAQVSEGRTFAAVHPISALKRKGLEALVADLLKLVPEAEAMFGEDEITDRSQRF 180

Query: 382 HLSQTVRYLEMASLNEK 398
              + VR   M  L E+
Sbjct: 181 LAGELVREQLMRQLGEE 197


>gi|269958647|ref|YP_003328434.1| GTP-binding protein Era [Anaplasma centrale str. Israel]
 gi|269848476|gb|ACZ49120.1| GTP-binding protein Era [Anaplasma centrale str. Israel]
          Length = 297

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 17/174 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L     +IVT    TTR  +    +     +  +DT G+    
Sbjct: 12  VAVVGATNAGKSTLINELVGFKASIVTPKVHTTRVRMNAVRNDGNVQLVFTDTPGVFAPK 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
            ++EK  +K  ++ +  AD+++L+ E  +       +        +I  + +  K+DL  
Sbjct: 72  TVLEKFLVKNAWMSIRGADIVVLVLEARNYLCSQVARVVAKVKHSHIPAVAVLNKTDLLQ 131

Query: 334 T--YTEEYDHLISSFTGEGLEEL-------INKIKSILSNKFKKLPFSIPSHKR 378
                E   H+ S     G+  +          + + L       P+  P  +R
Sbjct: 132 ECRIREILAHVQSMHEFTGIFAVSALHGLGTEALLTHLRESADYCPWLYPGTQR 185


>gi|261820520|ref|YP_003258626.1| GTP-binding protein Era [Pectobacterium wasabiae WPP163]
 gi|261604533|gb|ACX87019.1| GTP-binding protein Era [Pectobacterium wasabiae WPP163]
          Length = 301

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 74/199 (37%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +LI+ + E    N   ++   K     +  +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELIIFVVEGTHWNDDDDMVLNKLRDQKLPVLLAINKVDNVT 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T+   H+               S+  G  ++ + + ++  L       P    + +  
Sbjct: 131 DKTKLLPHIQFLSQQMDFLDVVPISAEKGTNVDTIASIVRKHLPQATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 191 RFMASEIIREKLMRFLGEE 209


>gi|328955430|ref|YP_004372763.1| GTP-binding protein Era [Coriobacterium glomerans PW2]
 gi|328455754|gb|AEB06948.1| GTP-binding protein Era [Coriobacterium glomerans PW2]
          Length = 324

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 204 SSHISQGKLG-EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           S  I+    G E   +G+ + ++G  NAGKS+L NA+  K +AI +++  TTR  L   +
Sbjct: 18  SEQIATADDGVEEFHSGF-VALVGRPNAGKSTLLNAIFGKKIAITSNVVQTTRRRLRAVV 76

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEI 314
           +  G  +   DT G+ +  D + +E  K    E+ + D++ L  +             E 
Sbjct: 77  NRPGCQIVFVDTPGLHKPQDSLGRELNKGALAELVDVDVVALTVDATKPVGSGDRWVAER 136

Query: 315 SFPKNIDFIFIGTKSDLY 332
               +   + + TK+DL 
Sbjct: 137 VARTSAVRVLVITKADLA 154


>gi|306841837|ref|ZP_07474519.1| GTP-binding proten HflX [Brucella sp. BO2]
 gi|306288064|gb|EFM59461.1| GTP-binding proten HflX [Brucella sp. BO2]
          Length = 472

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 148 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 204

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 205 KILRIKRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 263

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 264 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 323

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 324 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAAGSEEGRPIP 383

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 384 VSAITGEGVDRLLSLIETRIAGSLGSVDLVLSPFDLHL 421


>gi|254719175|ref|ZP_05180986.1| GTP1/OBG [Brucella sp. 83/13]
 gi|265984171|ref|ZP_06096906.1| GTP-binding protein [Brucella sp. 83/13]
 gi|306838167|ref|ZP_07471023.1| GTP-binding proten HflX [Brucella sp. NF 2653]
 gi|264662763|gb|EEZ33024.1| GTP-binding protein [Brucella sp. 83/13]
 gi|306406757|gb|EFM62980.1| GTP-binding proten HflX [Brucella sp. NF 2653]
          Length = 472

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 148 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 204

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 205 KILRIKRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 263

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 264 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 323

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 324 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAAGSEEGRPIP 383

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 384 VSAITGEGVDRLLSLIETRIAGALGSVDLMLSPFDLHL 421


>gi|114706261|ref|ZP_01439163.1| GTP-binding protein Era [Fulvimarina pelagi HTCC2506]
 gi|114538122|gb|EAU41244.1| GTP-binding protein Era [Fulvimarina pelagi HTCC2506]
          Length = 318

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 81/203 (39%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IVT    TTR ++      +   +   DT G
Sbjct: 25  RSGF-VALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIAIKDRTQIVFVDTPG 83

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPKNIDFI----FIGTK 328
           +      +++  +K  +   ++AD++L + +    ++ + E+   +  D       +  K
Sbjct: 84  VFSPRRRLDRAMVKTAWSGAKDADILLAIVDAERGVSPELELILERLKDVRQTKVLLLNK 143

Query: 329 SD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D             +      +   +IS+  G G ++L+  +   L       P    S
Sbjct: 144 IDRIKRDKLLGLTQQIVDKVVFDQVFMISALDGSGCKDLMTWLAGALPEGPWYYPEDQIS 203

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+++
Sbjct: 204 DLPLRQLAAEITREKVFLRLHQE 226


>gi|134299122|ref|YP_001112618.1| HSR1-like GTP-binding protein [Desulfotomaculum reducens MI-1]
 gi|134051822|gb|ABO49793.1| GTP-binding protein, HSR1-related protein [Desulfotomaculum
           reducens MI-1]
          Length = 421

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 100/248 (40%), Gaps = 19/248 (7%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213
           L         +L+ +   I        + +V     ++ ++D+     ++  H S  +  
Sbjct: 136 LLPRLTGLGTQLSRLGGGIGTRGPGETKLEVDRRRIRKRISDLEQELKEVQRHRSLLRKS 195

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKIS 272
                   + ++G++NAGKS+L  +L   D+ +V D    T D  T  + L     V ++
Sbjct: 196 RKSEPLPIVSLVGYTNAGKSTLLKSLTGADI-LVEDKLFATLDPTTRRISLPNNDNVLLT 254

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNI 320
           DT G  +          + T  EV+ +DL+L + + +               E     + 
Sbjct: 255 DTVGFIQNLPHHLVAAFRATLEEVQESDLLLHIVDASHPNYEGQIRAVETVLESLHVLDK 314

Query: 321 DFIFIGTKSDLYST-----YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
             I +  K D+        +TE     IS+ +GEG ++L++ I  +L  ++  L  ++P 
Sbjct: 315 PSIMVFNKIDMVKDVQEIPFTENPRVYISATSGEGSDQLLDMIAGVLKERYSILKLTVPY 374

Query: 376 HKRHLYHL 383
            K +L  +
Sbjct: 375 DKTNLISI 382


>gi|120599801|ref|YP_964375.1| GTP-binding protein Era [Shewanella sp. W3-18-1]
 gi|120559894|gb|ABM25821.1| GTP-binding protein Era [Shewanella sp. W3-18-1]
 gi|319425562|gb|ADV53636.1| GTP-binding protein Era [Shewanella putrefaciens 200]
          Length = 338

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 28/215 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + ++I +  P TTR  +          +   DT G+   +
Sbjct: 47  VAIIGRPNVGKSTLLNRLLGQKISITSKKPQTTRHRIMGIHTDGPKQIVFIDTPGLHIEE 106

Query: 282 DIVEKEGIKRTFLEVENADL--ILLLKEI---NSKKEISFPK------NIDFIFIGTKSD 330
                  + R       AD+  ++ + +     +  E+   K          I    K D
Sbjct: 107 QRAINRLMNRA-AASSLADVAMVIFVVDGMTWTADDEMVLSKLRRGGEERKTILAINKVD 165

Query: 331 --------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                         +   Y  +    IS+  G  ++ ++    + L       P    + 
Sbjct: 166 NIKDKEALFPYLEEVAKKYPFDEILPISASKGTNVQRILELAAASLPQNPFFFPEDYVTD 225

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +   +  S+ VR   M  L + +   D     +  
Sbjct: 226 RSQRFMASEIVREKLMRFLGD-ELPYD-ATVEIEQ 258


>gi|22125198|ref|NP_668621.1| GTP-binding protein Era [Yersinia pestis KIM 10]
 gi|45442305|ref|NP_993844.1| GTP-binding protein Era [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597205|ref|YP_071396.1| GTP-binding protein Era [Yersinia pseudotuberculosis IP 32953]
 gi|108808447|ref|YP_652363.1| GTP-binding protein Era [Yersinia pestis Antiqua]
 gi|108811370|ref|YP_647137.1| GTP-binding protein Era [Yersinia pestis Nepal516]
 gi|145598836|ref|YP_001162912.1| GTP-binding protein Era [Yersinia pestis Pestoides F]
 gi|149365389|ref|ZP_01887424.1| putative GTP-binding protein [Yersinia pestis CA88-4125]
 gi|153948940|ref|YP_001400118.1| GTP-binding protein Era [Yersinia pseudotuberculosis IP 31758]
 gi|162419723|ref|YP_001607936.1| GTP-binding protein Era [Yersinia pestis Angola]
 gi|165925230|ref|ZP_02221062.1| GTP-binding protein Era [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|166008313|ref|ZP_02229211.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212599|ref|ZP_02238634.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398745|ref|ZP_02304269.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421165|ref|ZP_02312918.1| GTP-binding protein Era [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423101|ref|ZP_02314854.1| GTP-binding protein Era [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167467391|ref|ZP_02332095.1| GTP-binding protein Era [Yersinia pestis FV-1]
 gi|170023436|ref|YP_001719941.1| GTP-binding protein Era [Yersinia pseudotuberculosis YPIII]
 gi|186896302|ref|YP_001873414.1| GTP-binding protein Era [Yersinia pseudotuberculosis PB1/+]
 gi|218929791|ref|YP_002347666.1| GTP-binding protein Era [Yersinia pestis CO92]
 gi|229838282|ref|ZP_04458441.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895522|ref|ZP_04510693.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis
           Pestoides A]
 gi|229898846|ref|ZP_04513991.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901620|ref|ZP_04516742.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis
           Nepal516]
 gi|270489809|ref|ZP_06206883.1| GTP-binding protein Era [Yersinia pestis KIM D27]
 gi|294504510|ref|YP_003568572.1| GTP-binding protein Era [Yersinia pestis Z176003]
 gi|21263587|sp|Q8ZD71|ERA_YERPE RecName: Full=GTPase Era
 gi|81691694|sp|Q667V2|ERA_YERPS RecName: Full=GTPase Era
 gi|123245663|sp|Q1C554|ERA_YERPA RecName: Full=GTPase Era
 gi|123373347|sp|Q1CKE3|ERA_YERPN RecName: Full=GTPase Era
 gi|189037686|sp|A7FFU0|ERA_YERP3 RecName: Full=GTPase Era
 gi|189037837|sp|A4TKX7|ERA_YERPP RecName: Full=GTPase Era
 gi|226741407|sp|B2KA46|ERA_YERPB RecName: Full=GTPase Era
 gi|226741408|sp|A9R403|ERA_YERPG RecName: Full=GTPase Era
 gi|226741409|sp|B1JRC8|ERA_YERPY RecName: Full=GTPase Era
 gi|21958063|gb|AAM84872.1|AE013732_4 GTP-binding protein [Yersinia pestis KIM 10]
 gi|45437169|gb|AAS62721.1| putative GTP-binding protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590487|emb|CAH22127.1| putative GTP-binding protein [Yersinia pseudotuberculosis IP 32953]
 gi|108775018|gb|ABG17537.1| GTP-binding protein [Yersinia pestis Nepal516]
 gi|108780360|gb|ABG14418.1| putative GTP-binding protein [Yersinia pestis Antiqua]
 gi|115348402|emb|CAL21338.1| putative GTP-binding protein [Yersinia pestis CO92]
 gi|145210532|gb|ABP39939.1| GTP-binding protein [Yersinia pestis Pestoides F]
 gi|149291802|gb|EDM41876.1| putative GTP-binding protein [Yersinia pestis CA88-4125]
 gi|152960435|gb|ABS47896.1| GTP-binding protein Era [Yersinia pseudotuberculosis IP 31758]
 gi|162352538|gb|ABX86486.1| GTP-binding protein Era [Yersinia pestis Angola]
 gi|165922837|gb|EDR39988.1| GTP-binding protein Era [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992695|gb|EDR44996.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206530|gb|EDR51010.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960654|gb|EDR56675.1| GTP-binding protein Era [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051249|gb|EDR62657.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057271|gb|EDR67017.1| GTP-binding protein Era [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169749970|gb|ACA67488.1| GTP-binding protein Era [Yersinia pseudotuberculosis YPIII]
 gi|186699328|gb|ACC89957.1| GTP-binding protein Era [Yersinia pseudotuberculosis PB1/+]
 gi|229681549|gb|EEO77643.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis
           Nepal516]
 gi|229688394|gb|EEO80465.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694648|gb|EEO84695.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701328|gb|EEO89356.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis
           Pestoides A]
 gi|262362498|gb|ACY59219.1| GTP-binding protein Era [Yersinia pestis D106004]
 gi|262366497|gb|ACY63054.1| GTP-binding protein Era [Yersinia pestis D182038]
 gi|270338313|gb|EFA49090.1| GTP-binding protein Era [Yersinia pestis KIM D27]
 gi|294354969|gb|ADE65310.1| GTP-binding protein Era [Yersinia pestis Z176003]
 gi|320016074|gb|ADV99645.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 303

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 73/199 (36%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 12  IAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E     +  E+   K        +    K D  +
Sbjct: 72  KRAINRLMNRAASSSLGDVELVIFVVEGTHWTADDEMVVNKLRSLQCPVLLAINKVDNVT 131

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T+   H+               S+  G  ++ + + ++  +       P    + +  
Sbjct: 132 DKTKLLPHMQFLSQQMNFLDVVPISAEKGMNVDTIASIVRKHMPEAEHHFPEDYITDRSQ 191

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 192 RFMASEIIREKLMRFLGEE 210


>gi|295836151|ref|ZP_06823084.1| GTP-binding protein HflX [Streptomyces sp. SPB74]
 gi|197695247|gb|EDY42180.1| GTP-binding protein HflX [Streptomyces sp. SPB74]
          Length = 496

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 95/271 (35%), Gaps = 30/271 (11%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF------SEEEDVQNFS 188
            +++     ++++  M   +      W   L+       +             E      
Sbjct: 181 HAKSREGKAQVALAQMQ-YMLPRLRGWGQSLSRQMGGGGSGSSGGGMATRGPGETKIETD 239

Query: 189 SKEVLNDILFLKNDISSHI--SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVA 245
            + +   +  ++ +I+        K  E  RN    + I G++NAGKSSL N L    V 
Sbjct: 240 RRRIREKMAKMRREIAEMKTGRDLKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGVL 299

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           +   +  T    +       G L  ++DT G          E  + T  EV ++DLIL +
Sbjct: 300 VENALFATLDPTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHV 359

Query: 306 KEINSKKEISFPK------------NIDFIFIGTKSDLYSTY-------TEEYDHLISSF 346
            + +                     ++  I +  K+D             E++   +S+ 
Sbjct: 360 VDGSHPAPEEQLAAVREVIREVGATDVPEIVVINKADAADPVVLQRLLRVEKHSIAVSAR 419

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +G+G+EEL+  I   L     ++   +P  +
Sbjct: 420 SGQGIEELLALIDEELPRPAVEVDVLVPYTE 450


>gi|15676585|ref|NP_273729.1| GTP-binding protein Era [Neisseria meningitidis MC58]
 gi|7225915|gb|AAF41105.1| GTP-binding protein Era [Neisseria meningitidis MC58]
 gi|316983659|gb|EFV62640.1| GTP-binding protein Era [Neisseria meningitidis H44/76]
 gi|325139864|gb|EGC62395.1| GTP-binding protein Era [Neisseria meningitidis CU385]
          Length = 324

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 75/219 (34%), Gaps = 42/219 (19%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +     R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 19  DIETFLAGERAAGGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 77

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----------------ENADLILLL 305
              +       DT G +        + + +   E                  +AD ++L 
Sbjct: 78  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVL- 136

Query: 306 KEINSKKEISFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGE 349
                      PK+   I +  K D                + + +       +S+  G 
Sbjct: 137 --------KQLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGL 188

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            +  L+  IK  L       P  + + K   +   + VR
Sbjct: 189 RIANLLELIKPYLPESVPMYPEDMVTDKSARFLAMEIVR 227


>gi|203284558|ref|YP_002222298.1| GTP-binding protein [Borrelia duttonii Ly]
 gi|226741168|sp|B5RMK6|ERA_BORDL RecName: Full=GTPase Era
 gi|201084001|gb|ACH93592.1| GTP-binding protein [Borrelia duttonii Ly]
          Length = 290

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 85/213 (39%), Gaps = 23/213 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G  + GKS+L N++    ++I +  P TTR+ +      +   +   DT 
Sbjct: 1   MKSGF-VSIIGRPSTGKSTLLNSICGHQISITSSTPQTTRNKIKGIFTDKRGQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGT 327
           G   +        +   +  +   +LI+ + +I  +          I     I+FI +  
Sbjct: 60  GFHLSKKNFNIALMNNVYSAIIETELIIYVIDIQDQPGTEENEILTIIQRSKINFIVVIN 119

Query: 328 KSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D++ T  +E                 IS+     +E + +KI   L+      P    
Sbjct: 120 KIDIHKTKEKEIMTFLEEKKIQKNKIIKISAEKQINIETMKDKIYENLNEGPLYYPKEYY 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           + ++    +S+ +R + +  L E +    I  E
Sbjct: 180 TDQKINLRISEIIRGVTIKKLKE-ELPYSIYTE 211


>gi|126462218|ref|YP_001043332.1| small GTP-binding protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103882|gb|ABN76560.1| small GTP-binding protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 447

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 84/229 (36%), Gaps = 31/229 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   ++ ++  +   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 190 EADRRAIDEQVIRIRRQLDKVVKTRELHRASRRKVPFPIVALVGYTNAGKSTLFNRMTGA 249

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 250 DV-LAKDMLFATLDPTMRGVTLPSGRKVILSDTVGFISDLPTQLVAAFRATLEEVLEADL 308

Query: 302 ILLLKEINSKKEISFPKN-------------IDFIFIGTKSDLYS----------TYTEE 338
           IL +++I   +      +                + +  K DL                E
Sbjct: 309 ILHVRDIAHPETAEQAADVAEILQSLGVKGATPQVEVWNKLDLVEGAAHEQLLAQAAKSE 368

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLS 384
               +S+ TGEGL +L+  + +    +  +   ++      +R   H  
Sbjct: 369 TIFALSALTGEGLPDLLEAVSATFDEEKTERQLTLGFADGRRRAWLHAE 417


>gi|110633964|ref|YP_674172.1| GTP-binding protein, HSR1-related [Mesorhizobium sp. BNC1]
 gi|110284948|gb|ABG63007.1| GTP-binding protein, HSR1-related protein [Chelativorans sp. BNC1]
          Length = 460

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 30/221 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   I+ +K ++ +      L    R       + I+G++NAGKS+LFN L   
Sbjct: 193 EADRRLLQERIIRIKRELETVRRTRDLHRTKRRKVPFPIVAIVGYTNAGKSTLFNRLTGA 252

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D+   T D     +    G +V +SDT G             + T  EV  AD+
Sbjct: 253 SV-LAEDMLFATLDPTLRRVRFPHGTVVILSDTVGFISDLPPHLVAAFRATLEEVVEADV 311

Query: 302 ILLLKEINSKKEISFPKNIDFIF---------------IGTKSDLYSTYTEE-------- 338
           IL L++I+     +  ++++ +                +  K D  S    E        
Sbjct: 312 ILHLRDISDPDTAAHARDVEQVLASLGVDTSDPARAVEVWNKIDRLSEADRERLLRDDIN 371

Query: 339 --YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                 IS+ TGEG+E+L+  ++  LS +  ++ F++ S +
Sbjct: 372 KTAPIAISAITGEGIEDLMALVEERLSGEVSEVLFTLSSEQ 412


>gi|303241005|ref|ZP_07327515.1| GTP-binding proten HflX [Acetivibrio cellulolyticus CD2]
 gi|302591430|gb|EFL61168.1| GTP-binding proten HflX [Acetivibrio cellulolyticus CD2]
          Length = 619

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 98/251 (39%), Gaps = 22/251 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +   +S L G   ++L+ +   I       ++ +V     +  ++ +    +++   
Sbjct: 329 LAQLKYRVSRLIG-LGNQLSRLGGGIGTRGPGEKKLEVDRRHIRRRISYLESELSEVEKR 387

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE- 265
               +      +   + ++G++NAGKS+L N L K DV +  D    T D    +L L  
Sbjct: 388 RGFMRKSRDRDSLPVVALVGYTNAGKSTLMNTLCKSDV-LAEDKLFATLDPTARNLKLPN 446

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNI-- 320
           G    + DT G          E  K T  E   AD+++ + ++ S   +++I    NI  
Sbjct: 447 GREALLIDTVGFIRKLPHELIESFKSTLEEAVYADVLIHVVDVTSYEAQEQIEVVDNILN 506

Query: 321 -------DFIFIGTKSDLYSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKF 366
                    +    K D+                  IS+ T EG E+L+  I  +L    
Sbjct: 507 ALGASSKPIVMALNKVDMLEERKRAPILNPMGKVIEISAVTKEGFEDLLKAITDVLGQDE 566

Query: 367 KKLPFSIPSHK 377
           ++L   IP H+
Sbjct: 567 EELELLIPYHE 577


>gi|295094268|emb|CBK83359.1| GTP-binding protein HflX [Coprococcus sp. ART55/1]
          Length = 441

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 103/285 (36%), Gaps = 32/285 (11%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L G   D L+ +   I       ++ ++     ++ ++ +     ++ S 
Sbjct: 142 LAQLKFRATRLVG-MRDSLSRLGGGIGTRGPGEKKLEIDRRVIRDRISRLKAELRNVESQ 200

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-E 265
            SQ +          + I+G++NAGKS+L NAL    V +  D    T D  T    L  
Sbjct: 201 RSQQRKQRQRSAVPVVGIVGYTNAGKSTLLNALTGAGV-LQEDKLFATLDPTTRGYKLPG 259

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------- 312
           G  + ++DT G          E    T  E +  D+IL + + + +              
Sbjct: 260 GQNILLTDTVGFIRKLPHHLVEAFGSTLEEAKYCDVILHVVDASDENWDKNIETVYGTLK 319

Query: 313 --EISFPKNIDFIFIGTKSDLYST--------YTEEYDHLISSFTGEGLEELINKIKSIL 362
             +I        I +  K D  S            +    IS+ TG+GL EL N I+ IL
Sbjct: 320 QLKIDENSGKPVITVFNKIDRISKDDLVGVRDLRADKTLYISAATGQGLPELANAIEEIL 379

Query: 363 SNKFKKLPFSIPSHKRHLYHL------SQTVRYLEMASLNEKDCG 401
            N+   +  +    +  L  L       QT  YL+     E    
Sbjct: 380 RNQKSYIRHTFAYSEAGLTGLIHKYGEIQTEEYLDDGIFIEAYVP 424


>gi|237736577|ref|ZP_04567058.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420439|gb|EEO35486.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817]
          Length = 406

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 28/168 (16%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G +NAGKSSL N +  + +++V++  GTT D +   ++L     V   DTAG
Sbjct: 8   NRVHIAIYGRTNAGKSSLINKITNQSISLVSETRGTTTDPVYKAMELLPIGPVVFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI---------DFIF 324
           I +T ++ E   +K+T   +   D+ LLL         +E+++ K            FI 
Sbjct: 68  IDDTTELGELR-VKKTKEILNKMDIALLLISTEVVLENQELNYEKEWIREIKKREKPFIV 126

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           I  K DL S               E L+E+  K+K  L  +  K+  S
Sbjct: 127 ILNKVDLVSV--------------EKLQEIEEKVKRELGCEISKVTTS 160


>gi|123441364|ref|YP_001005351.1| GTP-binding protein Era [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332162690|ref|YP_004299267.1| GTP-binding protein Era [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|189037685|sp|A1JKK4|ERA_YERE8 RecName: Full=GTPase Era
 gi|122088325|emb|CAL11116.1| putative GTP-binding protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318606795|emb|CBY28293.1| GTP-binding protein Era [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325666920|gb|ADZ43564.1| GTP-binding protein Era [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330860318|emb|CBX70632.1| GTP-binding protein era homolog [Yersinia enterocolitica W22703]
          Length = 303

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 73/199 (36%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 12  IAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E     +  E+   K        +    K D  +
Sbjct: 72  KRAINRLMNRAASSSIGDVELVIFVVEGTNWTADDEMVVNKLRSLQCPVLLAINKVDNVT 131

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T+   H+               S+  G  ++ + + ++  +       P    + +  
Sbjct: 132 DKTKLLPHIQFLSQQMNFLDVVPISAEKGMNVDTIASIVRKHMPEADHHFPEDYITDRSQ 191

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 192 RFMASEIIREKLMRFLGEE 210


>gi|117928689|ref|YP_873240.1| small GTP-binding protein [Acidothermus cellulolyticus 11B]
 gi|117649152|gb|ABK53254.1| GTP-binding protein HflX [Acidothermus cellulolyticus 11B]
          Length = 524

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 26/218 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEII---RNGYKIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+ +++   +   +        +   + I G++NAGKSSL N L   
Sbjct: 262 ELDRRRIRARMTKLRRELAELATTRDVKRRKRRVNDIPAVAIAGYTNAGKSSLLNRLTGA 321

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G +  ++DT G          E  + T  EV +ADL+
Sbjct: 322 GVLVEDALFATLDPTVRRATTSDGRIYTLTDTVGFVRHLPHQLVEAFRSTLEEVTDADLV 381

Query: 303 LLLKE------------INSKKEISFPKNIDFIFIGTKSDLYS-----------TYTEEY 339
           L + +            + +  +     +I  +    K+D+                   
Sbjct: 382 LHVVDGAHADPFGQIDAVRAVFDEIGASHIPELVAVNKTDIADPAVVATVLRAEERKGNR 441

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
              +S  TG GL++L   I+ +L      +   +P  +
Sbjct: 442 AVAVSVRTGAGLDDLRRAIEEMLPRPAVHVDVLVPYDE 479


>gi|281355288|ref|ZP_06241782.1| GTP-binding proten HflX [Victivallis vadensis ATCC BAA-548]
 gi|281318168|gb|EFB02188.1| GTP-binding proten HflX [Victivallis vadensis ATCC BAA-548]
          Length = 449

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 103/253 (40%), Gaps = 29/253 (11%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLF 236
           E E       + +   I  L+ ++ +   Q       R    +    I+G++N GKSS+ 
Sbjct: 183 EGEAQIETDRRLLRRRIQQLREELETVRKQRTTQRKARQRNAVPHGAIVGYTNVGKSSIL 242

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            AL+  ++ +V D    T D  T  + L+    + ++DT G          E  K T  E
Sbjct: 243 RALSGAEI-LVKDQLFATLDPTTRRITLDDNLELLLTDTVGFVRKLPHSLVEAFKSTLEE 301

Query: 296 VENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE------ 337
              AD +LL+ +++S +  +              +  +   +  K DL     +      
Sbjct: 302 AVLADFLLLVLDLSSNQLDAEWETTMSVLKELGAEEKNIQVVFNKLDLVDRENDLVRLAR 361

Query: 338 -----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
                     IS+ TGEG+++L  ++ S+ S +F+ L  ++P  +  L  L+     +  
Sbjct: 362 MNGLFPTAIYISTATGEGMDKLRERLASLASERFELLRVTLPPARSDLAALAHASGRIYE 421

Query: 393 ASLNEKDCGLDII 405
            + N++   L+++
Sbjct: 422 ENYNDQGE-LELV 433


>gi|260907227|ref|ZP_05915549.1| GTP-binding proten HflX [Brevibacterium linens BL2]
          Length = 491

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 92/250 (36%), Gaps = 28/250 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+  I++       K     RN    + I+G++NAGKSSL N L   
Sbjct: 229 ELDRRRIRARMSKLRRQITAMAPSRDTKRKNRARNHIPSVAIVGYTNAGKSSLLNQLTDA 288

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V +   +  T    +      +G     +DT G          E  + T  E  ++DL+
Sbjct: 289 EVMVQNALFATLDPTVRQSRTADGITFTYTDTVGFVRNLPHQLVEAFRSTLEEASDSDLL 348

Query: 303 LLLKEINSKK---EISFPK---------NIDFIFIGTKSDLYSTYTEEYDH-------LI 343
           L + + +      +I   +         +I  + +  K+D+         H        +
Sbjct: 349 LHIVDASHPDPHGQIHAVREVLKDVETGDIPELLVFNKADIADEAVITGLHAEYPEARFV 408

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD---- 399
           S+ T EG+ EL+  I+S+L +   ++   IP  +  L      +  +E            
Sbjct: 409 SAVTKEGVGELVETIESMLPSPNIEVTVLIPYERGDLVSKIYALGMVEHEEHGAGGTSMQ 468

Query: 400 --CGLDIIAE 407
                ++ AE
Sbjct: 469 AKVPAELAAE 478


>gi|148926637|ref|ZP_01810318.1| GTP-binding protein ERA like protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845156|gb|EDK22251.1| GTP-binding protein ERA like protein [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 291

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKE----ISFPKNIDFIFIGTKSD 330
           G+ E+   + +  ++     + + D+IL +  + +S K+    +S    +  I    K D
Sbjct: 60  GLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENFLSLNPQVPHIIALNKVD 119

Query: 331 LYSTYT 336
           L    T
Sbjct: 120 LTDNAT 125


>gi|134098073|ref|YP_001103734.1| GTP-binding protein Era [Saccharopolyspora erythraea NRRL 2338]
 gi|291007468|ref|ZP_06565441.1| GTP-binding protein Era [Saccharopolyspora erythraea NRRL 2338]
 gi|133910696|emb|CAM00809.1| GTP-binding protein of Era/ThdF family [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 301

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 11/128 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+    +G  NAGKS+L NAL    VAI +  P TTR  +   +      + I DT G
Sbjct: 8   RSGF-ACFVGRPNAGKSTLTNALVGSKVAITSSKPQTTRHAIRGIVHRPDAQLIIVDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNIDFIFIG 326
           +     ++ +      +      D++      +          +++     K    I + 
Sbjct: 67  LHRPRTLLGQRLNDLVYETWSEVDVVGFCVPADQKIGPGDRYIAEQLAKVAKRTPVIGVV 126

Query: 327 TKSDLYST 334
           TK+DL   
Sbjct: 127 TKTDLVGK 134


>gi|113968943|ref|YP_732736.1| GTP-binding protein, HSR1-related [Shewanella sp. MR-4]
 gi|114048919|ref|YP_739469.1| GTP-binding protein, HSR1-related [Shewanella sp. MR-7]
 gi|113883627|gb|ABI37679.1| GTP-binding protein, HSR1-related [Shewanella sp. MR-4]
 gi|113890361|gb|ABI44412.1| GTP-binding protein, HSR1-related [Shewanella sp. MR-7]
          Length = 435

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 111/312 (35%), Gaps = 32/312 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I      +     Q +      +   + ++G++NAGKS+LFNAL   DV    D    T
Sbjct: 173 NINKRLERVDKQREQSRRARKRSDMPTVSLVGYTNAGKSTLFNALTSSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------- 307
            D     LDL    V ++DT G             K T  E   ADL+L + +       
Sbjct: 232 LDPTLRKLDLPDGAVILADTVGFIRHLPHDLVAAFKATLQETRQADLLLHIVDCADENMA 291

Query: 308 -----INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEE 353
                + +  E      +  + +  K DL    T   ++          +S+    G + 
Sbjct: 292 DNFEQVQNVLEDIDAAGVMQLVVCNKIDLLEDVTPRIEYDEHSKPVRVWVSAQKRLGFDL 351

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL---- 409
           L+  I  ++     +L   IP+   H  +L Q  R   +      D G  I++  L    
Sbjct: 352 LLKAITELIGEVIHELTLKIPATAGH--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDAD 409

Query: 410 --RLASVSLGKI 419
             RLA  S G++
Sbjct: 410 WRRLAKQSQGEL 421


>gi|114704562|ref|ZP_01437470.1| GTP binding protein-like [Fulvimarina pelagi HTCC2506]
 gi|114539347|gb|EAU42467.1| GTP binding protein-like [Fulvimarina pelagi HTCC2506]
          Length = 459

 Score = 77.2 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 102/297 (34%), Gaps = 30/297 (10%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T+  R    +  ++ +   L   W                   + +      +  + 
Sbjct: 138 RARTKEGRLQVELAHLNYQRGRLVRSWTHLERQRGGAGFLGGPGETQIEADRRQLQSKIK 197

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +      + S     +     R    + ++G++NAGKS+LFN +   DV     +  T 
Sbjct: 198 ALEVELEKVRSTRQLHRAKRRKRPHPIVALVGYTNAGKSTLFNRMTGADVFAQNLLFATL 257

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-- 312
              +       G  +  SDT G             + T  EV  AD+IL +++++     
Sbjct: 258 DPTMRRTTLAHGTEILFSDTVGFISELPTHLVAAFRATLEEVIEADIILHIRDVSDPDSL 317

Query: 313 -------------EISFPKNIDFIFIGTKSDLYS-------------TYTEEYDHLISSF 346
                        EI        + +  K D                   +E  H++S++
Sbjct: 318 AQAEDVRQILRDLEIDADDTDHVVEVWNKIDRVDGSERERIETLAANEAEKERPHVVSAW 377

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           TGEG+E L+  I+  ++ K  +L  ++ P   R+L  + +    L+   L +    L
Sbjct: 378 TGEGIEALLADIERRIAGKIAELAVTLDPDGLRYLSWIYENASVLDREDLEDGSIHL 434


>gi|254704399|ref|ZP_05166227.1| GTP1/OBG [Brucella suis bv. 3 str. 686]
 gi|261755076|ref|ZP_05998785.1| GTP-binding protein [Brucella suis bv. 3 str. 686]
 gi|261744829|gb|EEY32755.1| GTP-binding protein [Brucella suis bv. 3 str. 686]
          Length = 472

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 98/273 (35%), Gaps = 36/273 (13%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E   ++ +  ++ +   L   W   L   R          E +       + +   IL +
Sbjct: 153 EGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQEKILRI 209

Query: 200 KNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+   T D
Sbjct: 210 KRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLD 268

Query: 257 VLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--- 312
                + L  G  V +SDT G             + T  EV  ADLIL +++I+      
Sbjct: 269 PTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISDPDNAA 328

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHLISSFT 347
                        I    +   + +  K D                   E     +S+ T
Sbjct: 329 QAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAAGSEEGRPIPVSAIT 388

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           GEG++ L++ I++ ++     +   +     HL
Sbjct: 389 GEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 421


>gi|240850696|ref|YP_002972096.1| GTP-binding protein HflX [Bartonella grahamii as4aup]
 gi|240267819|gb|ACS51407.1| GTP-binding protein HflX [Bartonella grahamii as4aup]
          Length = 447

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 85/221 (38%), Gaps = 29/221 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + +   I+ ++ ++ + I    L    R   +   + ++G++N GKS+LFN L+  
Sbjct: 181 EADRRLLQEKIIRIRRELETVIKTRALHRAKRKKTSYPVVALVGYTNTGKSTLFNRLSGA 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           DV     +  T    L   +   G  + +SDT G             + T  EV  ADLI
Sbjct: 241 DVLAKNMLFATLDPTLRKVVLPHGKTILLSDTVGFISNLPTNLIAAFRATLEEVVEADLI 300

Query: 303 LLLKEINSKK---------------EISFPKNIDFIFIGTKSDLYSTYT----------- 336
           L +++++                  +I        I +  K D+                
Sbjct: 301 LHVRDMSDLDHRAHAQDVLEVLSSLDIDIDDMEHIIEVWNKIDMLDEQALNVLQTSAKTR 360

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                ++S+  G+GL++L+  I+  +  + + + + +  H+
Sbjct: 361 LNPALMVSALKGDGLDQLLRAIEKRIFGEVQSIEYLLKPHE 401


>gi|294677339|ref|YP_003577954.1| GTP-binding proten HflX [Rhodobacter capsulatus SB 1003]
 gi|294476159|gb|ADE85547.1| GTP-binding proten HflX [Rhodobacter capsulatus SB 1003]
          Length = 427

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 84/216 (38%), Gaps = 26/216 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + ++ LK  ++  +   +L    R       + ++G++NAGKSSLFN +   
Sbjct: 170 EADRRAIDDQVIRLKRQLAKVVKTRELHRAARRKVPFPIVALVGYTNAGKSSLFNRMTGA 229

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V     +  T    +   +   G  + +SDT G             + T  EV  ADLI
Sbjct: 230 EVLAKDMLFATLDPTMRGLVLPSGRRIILSDTVGFISDLPHELVAAFRATLEEVLEADLI 289

Query: 303 LLLKEINSK-------------KEISFPKNIDFIFIGTKSD----------LYSTYTEEY 339
           L +++I+               + +   +++  I +  K D          L        
Sbjct: 290 LHVRDISHPETEEQAEDVGEILESLGVAEDVALIEVWNKIDALSEAVRQGLLAQDARRSD 349

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
              +S+ +GEG+  L+  I++ L   + +    +P 
Sbjct: 350 VQAVSALSGEGIGALVAAIEARLGEAWIEEDLDLPF 385


>gi|302525521|ref|ZP_07277863.1| GTP-binding protein HflX [Streptomyces sp. AA4]
 gi|302434416|gb|EFL06232.1| GTP-binding protein HflX [Streptomyces sp. AA4]
          Length = 481

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 34/229 (14%)

Query: 188 SSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK-- 242
             + +   +  L+ +I++   I + K G+ + N    + I+G++NAGKSSL NAL     
Sbjct: 219 DRRRISKRVAKLRREIAAMDTIRETKRGKRVANEVPSVAIVGYTNAGKSSLLNALTGAGV 278

Query: 243 --DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
             + A+   +  TTR   T     +G    ++DT G          +  + T  E  +AD
Sbjct: 279 LVEDALFATLDPTTRRAQTA----DGRTFTLTDTVGFVRHLPHQLVDAFRSTLEEAADAD 334

Query: 301 LILLLKEINSK-------------KEISFPKNIDFI---FIGTKSDLYSTYTEEY----- 339
           L+L + + +                EI+  +         +  K+D     T        
Sbjct: 335 LLLHVVDGSDAAPEDQVNAVREVLAEITRSRKEPLPPELLVINKADAADDVTLARLRHAL 394

Query: 340 --DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
                IS+ TG G+ +L   +   L      +   +P  +  L   +  
Sbjct: 395 PGSVQISARTGSGVADLAEVLAERLPRAELVIDVLVPYSRGELVSRAHA 443


>gi|293604015|ref|ZP_06686428.1| GTP-binding protein Era [Achromobacter piechaudii ATCC 43553]
 gi|292817619|gb|EFF76687.1| GTP-binding protein Era [Achromobacter piechaudii ATCC 43553]
          Length = 296

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 26/195 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  N GKS+L NAL    ++IV+    TTR  +   L  E       DT G
Sbjct: 7   RTGF-VAIVGRPNVGKSTLTNALIGSKISIVSRKAQTTRHRIHGVLTREHEQFVFVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEV----------------ENADLILLLKEINSKKEISFPKNI 320
            +          + R   +                    D  LL    N ++ I     I
Sbjct: 66  FQTRHGGAMNRMMNRVVTQALADVDVVVHVVEAGKWSEGDAKLLPLLPNPERTILVVSKI 125

Query: 321 DFIFIGTKSDLYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           D   +  + DL++  ++             S+   + L++L+ +I S L           
Sbjct: 126 DA--LKNRDDLFAFVSKIMALHPFGAVVPVSASKNQQLDQLLEEIASRLPEGEAMFEEDT 183

Query: 374 PSHKRHLYHLSQTVR 388
            + +   +  ++ VR
Sbjct: 184 LTDRPMRFIAAELVR 198


>gi|297526811|ref|YP_003668835.1| small GTP-binding protein [Staphylothermus hellenicus DSM 12710]
 gi|297255727|gb|ADI31936.1| small GTP-binding protein [Staphylothermus hellenicus DSM 12710]
          Length = 696

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 19/234 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +   ++ ++G  N GKS+LFN L  + V  V + PG T +    +    G  +   D  G
Sbjct: 3   KEYIEVGVVGQPNVGKSTLFNVLTGRKV-HVANWPGVTVEKHVGERIYRGRRIVFVDLPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSD 330
           I        +E I R ++  +  D++L+L +  + +        +       I + TK D
Sbjct: 62  IYGFSATTIEERIARKYILTQQPDVLLVLVDSLNPERTMYLAIQALEITPRVILVFTKVD 121

Query: 331 LYSTYTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
               +    ++             +SS TG G+ EL++ I  +   +  +    +  +K 
Sbjct: 122 SVHAHGIHINYYALSSKLGVPVVPVSSATGAGIVELLDTIIDVKEGRKGRKTPLVVDYKE 181

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432
               +   V  L   + N     +  +A  L    V L +I      E +L+ I
Sbjct: 182 LNPFIDSIVNILREKNGNILGFPIRWVAVRLLEGDVELEQIVQRKMGEDVLERI 235


>gi|294852449|ref|ZP_06793122.1| GTP-binding protein HflX [Brucella sp. NVSL 07-0026]
 gi|294821038|gb|EFG38037.1| GTP-binding protein HflX [Brucella sp. NVSL 07-0026]
          Length = 496

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 98/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W       R            E       + +  
Sbjct: 148 RARTKEGALQVELAHLNYQKGRLVRSWTHF---ERQRGGGGFLGGPGETQIEADRRLLQE 204

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 205 KILRIKRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 263

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 264 FATLDPTLHRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 323

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 324 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAAGSEEGRPIP 383

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 384 VSAITGEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 421


>gi|228998465|ref|ZP_04158056.1| hypothetical protein bmyco0003_30270 [Bacillus mycoides Rock3-17]
 gi|228761386|gb|EEM10341.1| hypothetical protein bmyco0003_30270 [Bacillus mycoides Rock3-17]
          Length = 425

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 111/318 (34%), Gaps = 35/318 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKLTHIRSFI 172
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q    +  +    
Sbjct: 80  NNELTPSQIRNLSAMLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 173 EA-------DLDFSEEEDVQNFSSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKI 222
            A              E       + + + I  +K  ++    H  + +        +++
Sbjct: 140 LALSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAIVVEHRKRYRERRKDNQVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMQLPCGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   +            +I  I +  K 
Sbjct: 259 PTSLVAAFRSTLEEAREADVILHVVDSADPNYVGHEQTVKKLLQDLEIDHIPIITVYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           D     +  + +    + S+F    L  L   +++ +  + +     IP  +  L  L +
Sbjct: 319 DRLHQNFIPFPKNDFLMTSAFEETDLLSLKESVETKMMEEMESYKVMIPPGEGRLLTLLK 378

Query: 386 TVRYLEMASLNEKDCGLD 403
           T   L      E     +
Sbjct: 379 TETVLTGMEFKEDGFLYE 396


>gi|256821981|ref|YP_003145944.1| GTP-binding protein Era [Kangiella koreensis DSM 16069]
 gi|256795520|gb|ACV26176.1| GTP-binding protein Era [Kangiella koreensis DSM 16069]
          Length = 299

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 79/207 (38%), Gaps = 23/207 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R GY   +LG  N GKS+L N +  + V+I +  P TTR  +      +   +   D
Sbjct: 3   ENFRCGY-AAVLGRPNVGKSTLMNHILGQKVSITSRKPQTTRHRILGIYTDDDAQILFVD 61

Query: 274 TAGIRETDDIVEKEGIKRTFLE-----------------VENADLILLLKEINSKKEISF 316
           T GI + +       + R                      E+ +L+L   +  + K I F
Sbjct: 62  TPGIHKNEARSINRYMNRAASSSMVDVDVVIFVIDGTQWTEDDELVLEKLQKTNCKTILF 121

Query: 317 PKNIDFIFIGTK-----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
              +D I    +     + +   +  +     S+  G+ LE L+ +IK  L       P 
Sbjct: 122 VNKVDKIQDKNQLLPHLAKITERFDFDAVFPGSALRGDNLEPLVKQIKEWLPKGDLFFPE 181

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEK 398
              + +   +  ++ +R   M SL E+
Sbjct: 182 DYVTDRSQRFMAAELIREKLMRSLGEE 208


>gi|227504875|ref|ZP_03934924.1| GTP-binding protein HflX [Corynebacterium striatum ATCC 6940]
 gi|227198566|gb|EEI78614.1| GTP-binding protein HflX [Corynebacterium striatum ATCC 6940]
          Length = 486

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 33/236 (13%)

Query: 188 SSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV 244
             + +  ++  L+ ++       + K  +   +   +I I G++NAGKSSL NA+    V
Sbjct: 223 DRRRIRTEMARLRKELRGMKTAREVKRSKRQSSTIPQIAIAGYTNAGKSSLINAMTGAGV 282

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D  T   +L +G  V  +DT G          E  K T  EV  AD++L
Sbjct: 283 -LVEDALFATLDPTTRRAELADGRQVVFTDTVGFVRHLPTQLVEAFKSTLEEVLAADIML 341

Query: 304 LLKEINSKKEISF----------------PKNIDFIFIGTKSD---------LYSTYTEE 338
            + + +    I                   +    I +  K D         +      E
Sbjct: 342 HVVDGSDPFPIKQIEAVNKVIYDIVKETGEQAPPEIIVINKIDQADPLVLAEIRHVLDHE 401

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH---LYHLSQTVRYLE 391
               +S+ TGEG++EL ++I+  L+++   +   +P  +       H   TVRY E
Sbjct: 402 NVVYVSAHTGEGIDELTSRIELFLNSRDSHVRLLVPFTRGDVVSRVHAEGTVRYEE 457


>gi|227825057|ref|ZP_03989889.1| small GTP-binding protein [Acidaminococcus sp. D21]
 gi|226905556|gb|EEH91474.1| small GTP-binding protein [Acidaminococcus sp. D21]
          Length = 605

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 98/266 (36%), Gaps = 24/266 (9%)

Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI 196
           SE ++Q  L+       L          L+ +   I        + +V     ++ +  +
Sbjct: 304 SEGKLQVELAQLQY---LLPRIMGQGASLSRLGGGIGTRGPGETKLEVDRRRIRDRIGFL 360

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
                 +       +         ++ ++G++NAGKSSL NAL   ++    +    T D
Sbjct: 361 EAQIEKMKGARRTQQKAREKSRIKQVCLVGYTNAGKSSLLNALTHSEI-YAENQLFATLD 419

Query: 257 VLTIDLDLEGYLV-KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN----SK 311
             T  L L    V  ++DT G  +          + T   V+ ADL+L + +++     K
Sbjct: 420 PTTRQLSLPNKEVCTLTDTVGFIQRLPHQLVAAFRSTLEVVKGADLLLHVIDVSHELHEK 479

Query: 312 KEISFPK--------NIDFIFIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELIN 356
           +E +           +   + +  K D       L      E    IS+ +GEG+  LI 
Sbjct: 480 QEEAVLSVLKELGVTDTPILTVYNKIDKLPDHEGLKKRLDREESLAISARSGEGIPALIK 539

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYH 382
           KI S L+    ++   IP  +  L  
Sbjct: 540 KIASFLNEGKTEVTLLIPYTETKLSA 565


>gi|325265813|ref|ZP_08132499.1| GTP-binding protein Era [Kingella denitrificans ATCC 33394]
 gi|324982451|gb|EGC18077.1| GTP-binding protein Era [Kingella denitrificans ATCC 33394]
          Length = 308

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 72/206 (34%), Gaps = 24/206 (11%)

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
             ++ +  +  R G+ I I+G  N GKS+L N L  + ++I +    TTR  +T     +
Sbjct: 7   LANEQQAADGYRCGF-IAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRHKVTGIYTDD 65

Query: 266 GYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLK------EINSKKEISFPK 318
                  DT G + +  + +           +   D +  +       E +       P 
Sbjct: 66  TAQFVFVDTPGFQTDHRNALNDRLNLNVTEAMSGVDAVAFVVEAMRFTEADRTVLKQLPN 125

Query: 319 NIDFIFIGTKSD------------LYSTYTEEYDH----LISSFTGEGLEELINKIKSIL 362
            I  + +  K D                  +E+D     ++S+  G  +  L+  +K  L
Sbjct: 126 KIPVVLVVNKIDKDKAKDKHALNAFIDQVRQEFDFAAAEVVSAKHGLRIANLLETLKPFL 185

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVR 388
                  P  + + K   +   + VR
Sbjct: 186 PESVPMYPEDMVTDKSSRFLAMEIVR 211


>gi|123436442|ref|XP_001309182.1| small GTP-binding protein [Trichomonas vaginalis G3]
 gi|121890897|gb|EAX96252.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
          Length = 434

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 10/117 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
            I ++G  NAGKS++ NA+ ++  +IV   PGTT D     +++      K+ DTAGI E
Sbjct: 20  HISMVGFMNAGKSTIMNAITQQPTSIVDSTPGTTADTKVALMEIHALGPCKLIDTAGIDE 79

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328
              +  K+ IK T   V+ +D++L + +  + +         ++  +      +  K
Sbjct: 80  KGTLGRKKYIK-TESAVKESDVVLFVIDPTNFEVGPFREISNLAVRRGKKVAVVLNK 135


>gi|154248821|ref|YP_001409646.1| GTP-binding protein HSR1-related [Fervidobacterium nodosum Rt17-B1]
 gi|154152757|gb|ABS59989.1| GTP-binding protein HSR1-related [Fervidobacterium nodosum Rt17-B1]
          Length = 421

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 95/251 (37%), Gaps = 23/251 (9%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           I S+        ++    +L     +   K   + +           E +     + + +
Sbjct: 108 IFSKHASTHEGKLQVEMAKLIYDLPRLRGKGLELSNPGGGIGTRGPGETILELDRRRIKD 167

Query: 195 DILFLKNDISSHISQGK--LGEIIRNGYKI-VILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  LK ++              + +GY I  ++G++NAGKS+L +AL+K++  I++D  
Sbjct: 168 RISQLKKELEKIRKNRHTVRKSRLESGYYIFSVVGYTNAGKSTLLSALSKEEDIIISDKM 227

Query: 252 GTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            +T +     + L +G  V +SDT G          E    T  E+  +D+I++L +++ 
Sbjct: 228 FSTLNPTVRRIKLPDGRFVLLSDTVGFIRKLPHTLVEAFHSTLEEILYSDVIIILVDVSD 287

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYST-------YTEEYDHLISSFTGEGL 351
                         E     +  +  +  K DL          Y       IS+ +  G 
Sbjct: 288 TNYKKKLSASFSVLEEIKANDKPYFIVFNKIDLVPEDYLDMIRYEYPNSVFISAKSKLGF 347

Query: 352 EELINKIKSIL 362
           E L  KI+  +
Sbjct: 348 EVLYKKIREYI 358


>gi|317049179|ref|YP_004116827.1| GTP-binding protein Era [Pantoea sp. At-9b]
 gi|316950796|gb|ADU70271.1| GTP-binding protein Era [Pantoea sp. At-9b]
          Length = 301

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFPKNIDFIFIG--TKSDLYS 333
              + +   +     + + +L++ + +      + +  ++  ++     +    K D   
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVDGTRWTPDDEMVLNKLRDGKVPVVLAVNKVDNIQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             +    H               IS+ TG+ ++ +   ++  L       P    + +  
Sbjct: 131 DKSILLPHLQFLGQQMNFTDIVPISAETGKNVDTIAAIVRKRLPKAEHHFPEEYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|138894843|ref|YP_001125296.1| GTP-binding protein hflX [Geobacillus thermodenitrificans NG80-2]
 gi|196248586|ref|ZP_03147287.1| GTP-binding proten HflX [Geobacillus sp. G11MC16]
 gi|134266356|gb|ABO66551.1| GTP-binding protein hflX [Geobacillus thermodenitrificans NG80-2]
 gi|196212311|gb|EDY07069.1| GTP-binding proten HflX [Geobacillus sp. G11MC16]
          Length = 415

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 92/220 (41%), Gaps = 17/220 (7%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
              ++ H  + +        +++ ++G++NAGKS+LFN L   D ++  ++   T D LT
Sbjct: 177 LRRVAEHRGRYRERRQKNRAFQVALVGYTNAGKSTLFNRLTAAD-SLEENLLFATLDPLT 235

Query: 260 IDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
               L  GY V ++DT G  +          + T  EV+ ADL+L + + +        +
Sbjct: 236 RKCILPCGYTVLLTDTVGFIQDLPTTLVAAFRSTLEEVKEADLLLHVVDSSHPDYAEHER 295

Query: 319 ------------NIDFIFIGTKSDLYST---YTEEYDHLISSFTGEGLEELINKIKSILS 363
                       +I  + +  KSD  +     T     ++S+ +   ++ L   I+  + 
Sbjct: 296 TVLQLLAELGASSIPTVTVYNKSDRQAPQFLPTTTDAIVMSALSATDVDRLRRFIEEAVK 355

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
            +  +   SIPS K  L    +T   L+    NE+    +
Sbjct: 356 QQMSRYDVSIPSGKGKLLAQLKTDTILQEWHYNEQGGTYE 395


>gi|304438431|ref|ZP_07398371.1| GTP-binding protein Era [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368514|gb|EFM22199.1| GTP-binding protein Era [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 298

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 23/211 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NAL  + +AI++D P TTR  +   L  +   +   DT GI +  
Sbjct: 9   VAVVGRPNVGKSTLINALIGQKIAIMSDKPQTTRSRILCILTEKDAQIIFLDTPGIHKPQ 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSD--- 330
           D +     K T   +   D+++ + ++  K               +   +    K D   
Sbjct: 69  DALGSYMAKATEGALRGVDVVVFVVDVTEKMGAGERYILVQLAQVHAPVLLAVNKIDRIP 128

Query: 331 ------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 + ++Y + YD      IS+   E L  L+++IK  L    +  P  + + +   
Sbjct: 129 REESLPVIASYAKAYDFAAIVPISAREEENLTGLVDEIKEKLPEGPQYYPEDMVTDQPER 188

Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
             +++ VR  ++  L   +     +A ++  
Sbjct: 189 LIIAELVRE-KVLELTRDEVPHA-VAVDIEE 217


>gi|294790832|ref|ZP_06755990.1| GTP-binding protein Era [Scardovia inopinata F0304]
 gi|294458729|gb|EFG27082.1| GTP-binding protein Era [Scardovia inopinata F0304]
          Length = 343

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 1/107 (0%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
             + +    +  R+G+ I ++G  N GKS+L N+L  K VAI +  P TTR  +   +  
Sbjct: 11  EELERAGSDQTFRSGF-IAVVGRPNVGKSTLINSLVGKQVAITSSKPETTRKAIRAIVTR 69

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           +   + + DT GI     ++ K         + ++D I  L   N +
Sbjct: 70  DDCQLVLVDTPGIHRPRTVLGKRLNDIVDESLADSDAIAFLLPANQE 116


>gi|325203774|gb|ADY99227.1| GTP-binding protein Era [Neisseria meningitidis M01-240355]
          Length = 307

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 75/219 (34%), Gaps = 42/219 (19%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +     R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 2   DIETFLAGERAAGGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 60

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----------------ENADLILLL 305
              +       DT G +        + + +   E                  +AD ++L 
Sbjct: 61  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVL- 119

Query: 306 KEINSKKEISFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGE 349
                      PK+   + +  K D                + + +       +S+  G 
Sbjct: 120 --------KQLPKHTPVVLVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGL 171

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            +  L+  IK  L       P  + + K   +   + VR
Sbjct: 172 RIANLLELIKPYLPESVPMYPEDMVTDKSARFLAMEIVR 210


>gi|150399695|ref|YP_001323462.1| small GTP-binding protein [Methanococcus vannielii SB]
 gi|150012398|gb|ABR54850.1| small GTP-binding protein [Methanococcus vannielii SB]
          Length = 184

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 42/183 (22%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI----------DLDLEGY 267
           N +KIV++G  N+GKSSL N++  K+++ V+++ GTT+  +             ++ +  
Sbjct: 4   NNFKIVLVGPENSGKSSLVNSIFGKNISEVSEVGGTTKMPVKKFWGKIKIGKQKINPDFA 63

Query: 268 LVKISDTAGIRETDDIVEKEGI-------KRTFLEVENADLILLLKEINSKKEISFPK-- 318
            +   D  G+       EK+ +       ++T+ E++ +DLI+ + + +++   SF K  
Sbjct: 64  NITFVDLGGL----YFGEKKSVIMVGSVLEKTYEEIDTSDLIIHVVDASTELFKSFEKLH 119

Query: 319 -------NIDFIFIGTKSDLYS------------TYTEEYDHLISSFTGEGLEELINKIK 359
                      I +  K DL                 +      SS T EG+ EL+  I 
Sbjct: 120 HLLKFRYRKPIIVVINKCDLIDITKRQELQKYVGERLDNKVFFTSSTTYEGISELVGTIT 179

Query: 360 SIL 362
            IL
Sbjct: 180 EIL 182


>gi|163760594|ref|ZP_02167675.1| GTP-binding protein Era [Hoeflea phototrophica DFL-43]
 gi|162282209|gb|EDQ32499.1| GTP-binding protein Era [Hoeflea phototrophica DFL-43]
          Length = 312

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 80/203 (39%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  NAGKS+L N L    V+IV+    TTR ++      E   +   DT G
Sbjct: 19  RSGF-VALIGAPNAGKSTLVNQLVGAKVSIVSHKVQTTRAIVRGIAIHERAQIVFIDTPG 77

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFI--FIGTK 328
           I      +++  +   +   ++ D++L+L +       +++  +    ++      +  K
Sbjct: 78  IFAPKRRLDRAMVTTAWGGAKDGDMVLVLIDAERGIKGDAEALLDSLADVHQRKILVLNK 137

Query: 329 SD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D              +     +   +IS+ TG G  +L++ +   L       P    S
Sbjct: 138 VDRVKRDTLLALTAQCHEKAQFDETFMISALTGSGCADLMDYLARTLPEGPWYYPEDQIS 197

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+++
Sbjct: 198 DLPMRQLAAEITREKLYLRLHQE 220


>gi|309792496|ref|ZP_07686960.1| GTP-binding proten HflX [Oscillochloris trichoides DG6]
 gi|308225484|gb|EFO79248.1| GTP-binding proten HflX [Oscillochloris trichoides DG6]
          Length = 458

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 85/227 (37%), Gaps = 27/227 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++      + +  +     D+  H    +          + ++G++NAGKS+L NAL+  
Sbjct: 197 EIDRRLIDQRIAWLKEQLADVHRHRELYRQRRKGSGVPVVALVGYTNAGKSTLLNALSGA 256

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV +  D    T D  T  + L G + + ++DT G  +          + T  E+  ADL
Sbjct: 257 DV-LTQDQLFATLDPTTRQVTLPGNHHILLTDTVGFIQKLPTQLVAAFRATLEEINEADL 315

Query: 302 ILLLKEINSKKEISFPKNIDFIF------------IGTK------------SDLYSTYTE 337
           +L + ++         + ++               +  K            +DL      
Sbjct: 316 LLHVVDLTHPNAQEHAQTVEKTLEELGVSRKATLTVLNKVDKLEGVAAGEVADLVREMGL 375

Query: 338 EYD-HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
             D   +S+  G GL++L  +I + LS     L   IP  +  L  L
Sbjct: 376 PSDVIAVSAQRGWGLDQLGERIVTALSEGMVALKVLIPYQRNDLVSL 422


>gi|289826239|ref|ZP_06545351.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 40

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/37 (56%), Positives = 25/37 (67%)

Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           ++AE LRLA  SL +ITG    + LL  IFS FCIGK
Sbjct: 4   VLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 40


>gi|170781619|ref|YP_001709951.1| putative GTP-binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156187|emb|CAQ01329.1| putative GTP-binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 521

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 63/340 (18%), Positives = 118/340 (34%), Gaps = 45/340 (13%)

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG-KIDLLEA 128
           P P ++ G   AE         +  ++  +     +         RRA E+  K+ +++ 
Sbjct: 145 PDPSTYFGRGKAEE--------LRALVAAVGADTVIADTELAPSQRRALEDVVKVKVIDR 196

Query: 129 ESLADLISS------ETEMQRRLSMEGMSGELSSLYGQW-----IDKLTHIRSFIEADLD 177
            ++   I S      E + Q  L+       L      W           +         
Sbjct: 197 TAVILDIFSQHAKSREGKAQVELAQLQY---LLPRLRGWGDSMSRQAGGQVGGAGAGMGS 253

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSS 234
               E       + +   +  L+  I++           R+      + I+G++NAGKSS
Sbjct: 254 RGPGETKIELDRRRINTRMARLRKQIAAMKPARDTKRANRDRHSVPSVAIVGYTNAGKSS 313

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           L N + K  V +   +  T    +      +G L  ++DT G          E  + T  
Sbjct: 314 LLNRVTKAGVLVENALFATLDATVRKTETDQGQLYTLADTVGFVRNLPHQLVEAFRSTLE 373

Query: 295 EVENADLILLLKEINSKK---------EISFPKN---IDFIFIGTKSDLYSTYTE----- 337
           E+ ++D+++ + + +            E+    N   I  I +  KSDL S         
Sbjct: 374 ELADSDVLVHVVDASHPDPGAQLATVHEVIAEVNASAIPEIVVFNKSDLASADDRVVLRG 433

Query: 338 --EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                  +S+ TGEG+EEL  +I  +L     ++   +P 
Sbjct: 434 LAPQGVFVSARTGEGVEELRRRIAELLPQPTIEVDLLVPF 473


>gi|13959357|sp|Q9K0C7|ERA_NEIMB RecName: Full=GTPase Era
 gi|325200627|gb|ADY96082.1| GTP-binding protein Era [Neisseria meningitidis H44/76]
          Length = 307

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 75/219 (34%), Gaps = 42/219 (19%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +     R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 2   DIETFLAGERAAGGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 60

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----------------ENADLILLL 305
              +       DT G +        + + +   E                  +AD ++L 
Sbjct: 61  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVL- 119

Query: 306 KEINSKKEISFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGE 349
                      PK+   I +  K D                + + +       +S+  G 
Sbjct: 120 --------KQLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGL 171

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            +  L+  IK  L       P  + + K   +   + VR
Sbjct: 172 RIANLLELIKPYLPESVPMYPEDMVTDKSARFLAMEIVR 210


>gi|59800711|ref|YP_207423.1| GTP-binding protein Era [Neisseria gonorrhoeae FA 1090]
 gi|239998446|ref|ZP_04718370.1| GTP-binding protein Era [Neisseria gonorrhoeae 35/02]
 gi|240013571|ref|ZP_04720484.1| GTP-binding protein Era [Neisseria gonorrhoeae DGI18]
 gi|240016010|ref|ZP_04722550.1| GTP-binding protein Era [Neisseria gonorrhoeae FA6140]
 gi|240080150|ref|ZP_04724693.1| GTP-binding protein Era [Neisseria gonorrhoeae FA19]
 gi|240115104|ref|ZP_04729166.1| GTP-binding protein Era [Neisseria gonorrhoeae PID18]
 gi|240117387|ref|ZP_04731449.1| GTP-binding protein Era [Neisseria gonorrhoeae PID1]
 gi|240120640|ref|ZP_04733602.1| GTP-binding protein Era [Neisseria gonorrhoeae PID24-1]
 gi|240125196|ref|ZP_04738082.1| GTP-binding protein Era [Neisseria gonorrhoeae SK-92-679]
 gi|240127652|ref|ZP_04740313.1| GTP-binding protein Era [Neisseria gonorrhoeae SK-93-1035]
 gi|260441081|ref|ZP_05794897.1| GTP-binding protein Era [Neisseria gonorrhoeae DGI2]
 gi|59717606|gb|AAW89011.1| putative GTPase [Neisseria gonorrhoeae FA 1090]
          Length = 311

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 30/213 (14%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +     R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 6   DIETFLAGERAAGGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 64

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----------ENADLILLLKEINSK 311
              +       DT G +        + + +   E             A   + L + +  
Sbjct: 65  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVVVFVVEA---MRLTDADRV 121

Query: 312 KEISFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELI 355
                PK+   I +  K D                + + +       +S+  G  +  L+
Sbjct: 122 VLKQLPKHTPVILVINKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLL 181

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             +K  L       P  + + K   +   + VR
Sbjct: 182 ELLKPYLPESVPMYPEDMVTDKSARFLAMEIVR 214


>gi|77463363|ref|YP_352867.1| putative GTP-binding protein [Rhodobacter sphaeroides 2.4.1]
 gi|77387781|gb|ABA78966.1| Putative GTP-binding protein [Rhodobacter sphaeroides 2.4.1]
          Length = 416

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 84/229 (36%), Gaps = 31/229 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   ++ ++  +   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 159 EADRRAIDEQVIRIRRQLDKVVKTRELHRASRRKVPFPIVALVGYTNAGKSTLFNRMTGA 218

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 219 DV-LAKDMLFATLDPTMRGVTLPSGRKVILSDTVGFISDLPTQLVAAFRATLEEVLEADL 277

Query: 302 ILLLKEINSKKEISFPKN-------------IDFIFIGTKSDLYS----------TYTEE 338
           IL +++I   +      +                + +  K DL                E
Sbjct: 278 ILHVRDIAHPETAEQAADVAEILQSLGVKGATPQVEVWNKLDLVEGAAHEQLLAQAAKSE 337

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLS 384
               +S+ TGEGL +L+  + +    +  +   ++      +R   H  
Sbjct: 338 TIFALSALTGEGLPDLLEAVSATFDEEKTERQLTLGFADGRRRAWLHAE 386


>gi|254459073|ref|ZP_05072496.1| GTP-binding protein Era [Campylobacterales bacterium GD 1]
 gi|207084344|gb|EDZ61633.1| GTP-binding protein Era [Campylobacterales bacterium GD 1]
          Length = 292

 Score = 76.8 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 45/92 (48%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N+L  +++A+V+     TR      +  E   +   DT G+ E +
Sbjct: 7   VSLIGRPNAGKSTLMNSLLGENIAMVSQKANATRKRSNAIVMHEDTQIIFVDTPGLHERE 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            ++ +  +      + + DLI+ L  +    E
Sbjct: 67  KLLNQFMLDEALKAMGDCDLIVYLAPVTDSIE 98


>gi|332981267|ref|YP_004462708.1| small GTP-binding protein [Mahella australiensis 50-1 BON]
 gi|332698945|gb|AEE95886.1| small GTP-binding protein [Mahella australiensis 50-1 BON]
          Length = 186

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 19/167 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E I    KI ++G  N GKS +FN L  K V  V++ PGTT ++      +     +I D
Sbjct: 16  EHIEGLPKIALVGTPNVGKSVIFNRLTGKYVT-VSNYPGTTVEISRGKGRIGDCEFEIID 74

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGT 327
           T G+     I E+E + R  L  E  D++L + +  + K +           +  I +  
Sbjct: 75  TPGMYSLMPITEEERVARRLLLEEKPDVVLHIVDAKNIKRMLSFTLQLIEAGLPVILVLN 134

Query: 328 KSDLYSTYTEEYDHLI------------SSFTGEGLEELINKIKSIL 362
             D       + D               S+   +G++EL  ++   +
Sbjct: 135 VMDEAERLGIKIDAYKLRQKLGIPVVVTSAALNKGIKELKQEVTDYV 181


>gi|302522295|ref|ZP_07274637.1| GTP-binding protein HflX [Streptomyces sp. SPB78]
 gi|318059589|ref|ZP_07978312.1| ATP/GTP-binding protein [Streptomyces sp. SA3_actG]
 gi|318075953|ref|ZP_07983285.1| ATP/GTP-binding protein [Streptomyces sp. SA3_actF]
 gi|302431190|gb|EFL03006.1| GTP-binding protein HflX [Streptomyces sp. SPB78]
          Length = 520

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 97/262 (37%), Gaps = 26/262 (9%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q +  +  + G   SL  Q     +       A     E +   +   + +   +  
Sbjct: 216 SLAQMQYMLPRLRGWGQSLSRQMGGGGSGSSGGGMATRGPGETKIETD--RRRIREKMAK 273

Query: 199 LKNDISSHI--SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           ++ +I+        K  E  RN    + I G++NAGKSSL N L    V +V +    T 
Sbjct: 274 MRREIAEMKTGRDLKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGV-LVENALFATL 332

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D      +   G L  ++DT G          E  + T  EV ++DLIL + + +     
Sbjct: 333 DPTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGSHPAPE 392

Query: 315 SFPK------------NIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGEGLEELI 355
                           ++  I +  K+D             E++   +S+ +G+G+EEL+
Sbjct: 393 EQLAAVREVIREVGATDVPEIVVINKADAADPVVLQRLLRVEKHSIAVSARSGQGIEELL 452

Query: 356 NKIKSILSNKFKKLPFSIPSHK 377
             I   L     ++   +P  +
Sbjct: 453 ALIDEELPRPAVEVDVLVPYTE 474


>gi|194097975|ref|YP_002001023.1| GTP-binding protein Era [Neisseria gonorrhoeae NCCP11945]
 gi|254493165|ref|ZP_05106336.1| GTP-binding protein Era [Neisseria gonorrhoeae 1291]
 gi|268594307|ref|ZP_06128474.1| GTP-binding protein Era [Neisseria gonorrhoeae 35/02]
 gi|268596301|ref|ZP_06130468.1| GTP-binding protein Era [Neisseria gonorrhoeae FA19]
 gi|268598422|ref|ZP_06132589.1| GTP-binding protein Era [Neisseria gonorrhoeae MS11]
 gi|268600777|ref|ZP_06134944.1| GTP-binding protein Era [Neisseria gonorrhoeae PID18]
 gi|268603083|ref|ZP_06137250.1| GTP-binding protein Era [Neisseria gonorrhoeae PID1]
 gi|268683792|ref|ZP_06150654.1| GTP-binding protein Era [Neisseria gonorrhoeae SK-92-679]
 gi|268686032|ref|ZP_06152894.1| GTP-binding protein Era [Neisseria gonorrhoeae SK-93-1035]
 gi|291044413|ref|ZP_06570122.1| GTP-binding protein Era [Neisseria gonorrhoeae DGI2]
 gi|293399591|ref|ZP_06643744.1| GTP-binding protein Era [Neisseria gonorrhoeae F62]
 gi|193933265|gb|ACF29089.1| GTP-binding protein Era [Neisseria gonorrhoeae NCCP11945]
 gi|226512205|gb|EEH61550.1| GTP-binding protein Era [Neisseria gonorrhoeae 1291]
 gi|268547696|gb|EEZ43114.1| GTP-binding protein Era [Neisseria gonorrhoeae 35/02]
 gi|268550089|gb|EEZ45108.1| GTP-binding protein Era [Neisseria gonorrhoeae FA19]
 gi|268582553|gb|EEZ47229.1| GTP-binding protein Era [Neisseria gonorrhoeae MS11]
 gi|268584908|gb|EEZ49584.1| GTP-binding protein Era [Neisseria gonorrhoeae PID18]
 gi|268587214|gb|EEZ51890.1| GTP-binding protein Era [Neisseria gonorrhoeae PID1]
 gi|268624076|gb|EEZ56476.1| GTP-binding protein Era [Neisseria gonorrhoeae SK-92-679]
 gi|268626316|gb|EEZ58716.1| GTP-binding protein Era [Neisseria gonorrhoeae SK-93-1035]
 gi|291011307|gb|EFE03303.1| GTP-binding protein Era [Neisseria gonorrhoeae DGI2]
 gi|291610160|gb|EFF39282.1| GTP-binding protein Era [Neisseria gonorrhoeae F62]
 gi|317163729|gb|ADV07270.1| GTP-binding protein Era [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 313

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 30/213 (14%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +     R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 8   DIETFLAGERAAGGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 66

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----------ENADLILLLKEINSK 311
              +       DT G +        + + +   E             A   + L + +  
Sbjct: 67  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVVVFVVEA---MRLTDADRV 123

Query: 312 KEISFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELI 355
                PK+   I +  K D                + + +       +S+  G  +  L+
Sbjct: 124 VLKQLPKHTPVILVINKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLL 183

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             +K  L       P  + + K   +   + VR
Sbjct: 184 ELLKPYLPESVPMYPEDMVTDKSARFLAMEIVR 216


>gi|196033395|ref|ZP_03100807.1| GTP-binding protein [Bacillus cereus W]
 gi|228945480|ref|ZP_04107831.1| hypothetical protein bthur0007_16410 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|195993829|gb|EDX57785.1| GTP-binding protein [Bacillus cereus W]
 gi|228814172|gb|EEM60442.1| hypothetical protein bthur0007_16410 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 419

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 112/294 (38%), Gaps = 26/294 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL G     ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPGNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           +EEL+  I+S +  ++ K    IP  +  +     T  ++   S   +   L++
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNTHAHVLSTSYENEGTKLEV 404


>gi|333024032|ref|ZP_08452096.1| putative ATP/GTP-binding protein [Streptomyces sp. Tu6071]
 gi|332743884|gb|EGJ74325.1| putative ATP/GTP-binding protein [Streptomyces sp. Tu6071]
          Length = 520

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 97/262 (37%), Gaps = 26/262 (9%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q +  +  + G   SL  Q     +       A     E +   +   + +   +  
Sbjct: 216 SLAQMQYMLPRLRGWGQSLSRQMGGGGSGSSGGGMATRGPGETKIETD--RRRIREKMAK 273

Query: 199 LKNDISSHI--SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           ++ +I+        K  E  RN    + I G++NAGKSSL N L    V +V +    T 
Sbjct: 274 MRREIAEMKTGRDLKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGV-LVENALFATL 332

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D      +   G L  ++DT G          E  + T  EV ++DLIL + + +     
Sbjct: 333 DPTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGSHPAPE 392

Query: 315 SFPK------------NIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGEGLEELI 355
                           ++  I +  K+D             E++   +S+ +G+G+EEL+
Sbjct: 393 EQLAAVREVIREVGATDVPEIVVINKADAADPVVLQRLLRVEKHSIAVSARSGQGIEELL 452

Query: 356 NKIKSILSNKFKKLPFSIPSHK 377
             I   L     ++   +P  +
Sbjct: 453 ALIDEELPRPAVEVDVLVPYTE 474


>gi|254469267|ref|ZP_05082672.1| GTP-binding protein Era [Pseudovibrio sp. JE062]
 gi|211961102|gb|EEA96297.1| GTP-binding protein Era [Pseudovibrio sp. JE062]
          Length = 320

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 34/193 (17%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
             + E  R G+ + ++G  NAGKS+L N L    V+IVT    TTR ++      +   V
Sbjct: 20  APVNENSRAGF-VALIGAPNAGKSTLLNQLVGTKVSIVTHKVQTTRAIVRGVAIEDDSQV 78

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------------NSKKEISFP 317
              DT GI      +++  +   +   ++AD++ +L +             N  + I  P
Sbjct: 79  IFVDTPGIFRPKRRLDRAMVDTAWGGAKDADVVAVLIDAKKGINEAVERILNELEHIKLP 138

Query: 318 KNIDFIFIGTKSDL--------YSTYTEEY-----DHLISSFTGEGLEELINKIKSILSN 364
           K    + I  K D+         +    EY       ++S+  G G ++    I    S 
Sbjct: 139 K----VLILNKIDITKREQLLELAAKANEYTKFDQTFMVSAINGSGTKD----ILKYFSE 190

Query: 365 KFKKLPFSIPSHK 377
           +  K P+  P  +
Sbjct: 191 QMPKGPWLYPEDQ 203


>gi|146305671|ref|YP_001186136.1| GTP-binding protein, HSR1-related [Pseudomonas mendocina ymp]
 gi|145573872|gb|ABP83404.1| GTP-binding protein HflX [Pseudomonas mendocina ymp]
          Length = 433

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 98/274 (35%), Gaps = 25/274 (9%)

Query: 115 RRAFENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
            RAFE   +D            + T E + ++ +  +    + L   W   L   +  I 
Sbjct: 94  ERAFECRVLDRTGLILDIFAQRARTHEGKLQVELAQLDHMSTRLVRGWTH-LERQKGGIG 152

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
                  + +      +  +  I      + S   Q + G    +   + ++G++NAGKS
Sbjct: 153 LRGPGETQLETDRRLLRVRIRQIKQKLEKVRSQREQARRGRKRADIPSVSLVGYTNAGKS 212

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRT 292
           +LFNAL   +V    D    T D     L+L+    + ++DT G          E  + T
Sbjct: 213 TLFNALTASEV-YAADQLFATLDPTLRRLELDDLGPIVLADTVGFIRHLPHKLVEAFRAT 271

Query: 293 FLEVENADLILLLKEINSKKEISFPKNIDFIF------------IGTKSDLYSTYTEEYD 340
             E  N+DL+L + + +  + ++  + +  +             +  K DL      +  
Sbjct: 272 LEESSNSDLLLHVIDAHEPERMAQIEQVQAVLKEIGAHELPMLEVYNKLDLLEGVEPQIQ 331

Query: 341 ---------HLISSFTGEGLEELINKIKSILSNK 365
                      +S+  G GLE L   +  +L   
Sbjct: 332 RDADGKPQRVWLSAREGRGLELLRQAVAELLGED 365


>gi|30261871|ref|NP_844248.1| GTP-binding protein [Bacillus anthracis str. Ames]
 gi|47527117|ref|YP_018466.1| GTP-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184707|ref|YP_027959.1| GTP-binding protein [Bacillus anthracis str. Sterne]
 gi|65319149|ref|ZP_00392108.1| COG2262: GTPases [Bacillus anthracis str. A2012]
 gi|165869538|ref|ZP_02214197.1| GTP-binding protein [Bacillus anthracis str. A0488]
 gi|167633429|ref|ZP_02391754.1| GTP-binding protein [Bacillus anthracis str. A0442]
 gi|167638850|ref|ZP_02397125.1| GTP-binding protein [Bacillus anthracis str. A0193]
 gi|170686195|ref|ZP_02877417.1| GTP-binding protein [Bacillus anthracis str. A0465]
 gi|170707351|ref|ZP_02897806.1| GTP-binding protein [Bacillus anthracis str. A0389]
 gi|177650566|ref|ZP_02933533.1| GTP-binding protein [Bacillus anthracis str. A0174]
 gi|190566417|ref|ZP_03019335.1| GTP-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227815351|ref|YP_002815360.1| GTP-binding protein [Bacillus anthracis str. CDC 684]
 gi|229601146|ref|YP_002866248.1| GTP-binding protein [Bacillus anthracis str. A0248]
 gi|254684429|ref|ZP_05148289.1| GTP-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723956|ref|ZP_05185742.1| GTP-binding protein [Bacillus anthracis str. A1055]
 gi|254734730|ref|ZP_05192442.1| GTP-binding protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741136|ref|ZP_05198824.1| GTP-binding protein [Bacillus anthracis str. Kruger B]
 gi|254755381|ref|ZP_05207415.1| GTP-binding protein [Bacillus anthracis str. Vollum]
 gi|254759919|ref|ZP_05211943.1| GTP-binding protein [Bacillus anthracis str. Australia 94]
 gi|30256099|gb|AAP25734.1| GTP-binding protein [Bacillus anthracis str. Ames]
 gi|47502265|gb|AAT30941.1| GTP-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178634|gb|AAT54010.1| GTP-binding protein [Bacillus anthracis str. Sterne]
 gi|164714978|gb|EDR20496.1| GTP-binding protein [Bacillus anthracis str. A0488]
 gi|167513314|gb|EDR88685.1| GTP-binding protein [Bacillus anthracis str. A0193]
 gi|167531467|gb|EDR94145.1| GTP-binding protein [Bacillus anthracis str. A0442]
 gi|170127850|gb|EDS96722.1| GTP-binding protein [Bacillus anthracis str. A0389]
 gi|170669892|gb|EDT20633.1| GTP-binding protein [Bacillus anthracis str. A0465]
 gi|172083710|gb|EDT68770.1| GTP-binding protein [Bacillus anthracis str. A0174]
 gi|190562552|gb|EDV16519.1| GTP-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227003173|gb|ACP12916.1| GTP-binding protein [Bacillus anthracis str. CDC 684]
 gi|229265554|gb|ACQ47191.1| GTP-binding protein [Bacillus anthracis str. A0248]
          Length = 419

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 118/295 (40%), Gaps = 28/295 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E Q ++ +  +   +  L G   + L      +        E+ ++    +++  
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIG-LRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEE 169

Query: 195 DILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIV 247
            I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V
Sbjct: 170 QISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQV 229

Query: 248 T--DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
              D+   T +    ++DL G     ++DT G          +  + T  EV  ADL++ 
Sbjct: 230 FEKDMLFATLETSVRNIDLPGNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIH 289

Query: 305 LKE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGE 349
           + +    N ++ I            +NI  I+   KSD+        +E    +S+    
Sbjct: 290 VVDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHV 349

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           G+EEL+  I+S +  ++ K    IP  +  +     T  ++   S   +   L++
Sbjct: 350 GIEELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNTHAHVLSTSYENEGTKLEV 404


>gi|294631824|ref|ZP_06710384.1| GTP-binding protein HflX [Streptomyces sp. e14]
 gi|292835157|gb|EFF93506.1| GTP-binding protein HflX [Streptomyces sp. e14]
          Length = 496

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 103/275 (37%), Gaps = 25/275 (9%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF-SEEEDVQNFSSKEVL 193
            +++     ++++  M   +      W   L+         L      E       + + 
Sbjct: 186 HAKSREGKAQVALAQMQ-YMLPRLRGWGQSLSRQMGGGSGGLATRGPGETKIETDRRRIR 244

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTDI 250
             +  ++ +I+   +  +L    R   K+    I G++NAGKSSL N L    V +   +
Sbjct: 245 EKMAKMRREIAEMKTGRELKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENAL 304

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE--- 307
             T    +       G L  ++DT G          E  + T  EV ++DLIL + +   
Sbjct: 305 FATLDPTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGSH 364

Query: 308 INSKKEISFPK---------NIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGEGL 351
            N +++++  +         ++  I +  K+D             E++   +S+ TG G+
Sbjct: 365 PNPEEQLAAVREVIRDVGATDVPEIVVVNKADAADPLVLQRLLRVEKHSIAVSARTGRGI 424

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
            EL+  I + L     ++   +P     L   + T
Sbjct: 425 PELLALIDAELPRPSVEIEALVPYTHGKLVARAHT 459


>gi|260590124|ref|ZP_05856037.1| GTP-binding protein HflX [Blautia hansenii DSM 20583]
 gi|331084381|ref|ZP_08333485.1| GTP-binding protein HflX [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260539636|gb|EEX20205.1| GTP-binding protein HflX [Blautia hansenii DSM 20583]
 gi|330401645|gb|EGG81226.1| GTP-binding protein HflX [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 416

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 92/234 (39%), Gaps = 22/234 (9%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           K  ++ +      +  H    + G    N     I+G++NAGKS+L N L    V +  D
Sbjct: 171 KLRISQLKKELEQVKRHRQVLREGRSRENIMTAAIVGYTNAGKSTLLNTLTDAKV-LEED 229

Query: 250 IPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D  T  L+L G   + ++DT G          E  K T  E + AD I+ + +I
Sbjct: 230 KLFATLDPTTRILELPGKQKLYLTDTVGFIRKLPHHLIEAFKSTLEEAKYADFIIHVVDI 289

Query: 309 NSKKEISFP------------KNIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEG 350
           ++ +                 ++   + +  K D          +  +Y    +  TG+G
Sbjct: 290 SNPQREKQMFVVYETLQELGVEDKKIVTLFNKQDKLQDAETIRDFKADYIVKTAIKTGQG 349

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           LEEL   ++ IL+     L   +   +     L +  +Y ++ S    D G++I
Sbjct: 350 LEELKEVLEKILTENQIYLERILDYQEAGQIQLIR--KYGQLISEEYTDRGIEI 401


>gi|119953438|ref|YP_945647.1| GTP-binding protein Era [Borrelia turicatae 91E135]
 gi|254783287|sp|A1R085|ERA_BORT9 RecName: Full=GTPase Era
 gi|119862209|gb|AAX17977.1| GTP-binding protein era-like [Borrelia turicatae 91E135]
          Length = 290

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 82/204 (40%), Gaps = 22/204 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G  + GKS+L N++ +  ++I++ IP TTR+ +      +   +   DT 
Sbjct: 1   MKSGF-VSIIGRPSTGKSTLLNSICEHQISIISSIPQTTRNKIKGIFTDKRGQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGT 327
           G   +        +      ++  +LIL + +I  K  I             I+F+ +  
Sbjct: 60  GFHLSKKQFNIALMHNVHSAIKETELILYVIDIQDKPGIEENEILTIISKSKINFLVVIN 119

Query: 328 KSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D+  T   E                 IS+     +EE+ +KI   L       P    
Sbjct: 120 KIDIQKTKEREIMIFLEEKGIKKDNIIKISAEQKINIEEIKDKIYENLQEGPLYYPEEYY 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +      S+ +R + +  L E+
Sbjct: 180 TDQEMNLRTSEIIRGVTIKKLKEE 203


>gi|111221450|ref|YP_712244.1| GTP-binding protein Era [Frankia alni ACN14a]
 gi|111148982|emb|CAJ60662.1| putative GTP-binding protein [Frankia alni ACN14a]
          Length = 314

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 11/136 (8%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           SH   G      R+G+   ++G  NAGKS+L NAL    VAI +  P TTR  +   +  
Sbjct: 5   SHAPGGTTPAEFRSGF-ACLVGRPNAGKSTLTNALVGTKVAITSGRPQTTRHAIRGIVHR 63

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS 315
               + + DT G+     ++ +         +   D++      +           +E+S
Sbjct: 64  TDAQLVLVDTPGLHRPRTLLGQRLNDVVRATLSEVDVVGFCMPADEPVGRGDRFIAEELS 123

Query: 316 -FPKNIDFIFIGTKSD 330
             PK    + I TK+D
Sbjct: 124 RLPKRTPVVAILTKTD 139


>gi|307132117|ref|YP_003884133.1| membrane-associated, 16S rRNA-binding GTPase [Dickeya dadantii
           3937]
 gi|306529646|gb|ADM99576.1| membrane-associated, 16S rRNA-binding GTPase [Dickeya dadantii
           3937]
          Length = 301

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +LI+ + E        E+   K        +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELIIFVVEGTHWTDDDEMVVNKLRDQKTPVLLAINKVDNVA 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T+   H+               S+  G  ++ +   ++  L       P    + +  
Sbjct: 131 DKTKLLPHIQMLSEKMNFLDVVPISAEKGTNVDTIAAIVRKHLPQAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 191 RFMASEIIREKLMRFLGEE 209


>gi|171920300|ref|ZP_02931650.1| GTP-binding protein Era [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|171902714|gb|EDT49003.1| GTP-binding protein Era [Ureaplasma parvum serovar 1 str. ATCC
           27813]
          Length = 300

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 23/167 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NA+ KK V+I+++ P TTR+ +    + +   +  +DT G  E  
Sbjct: 8   VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGFHEPS 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLK------EINSKKEISFPK---NIDFIFIGTKSDLY 332
           + ++        +  + A++IL +       + N  + I+  K     + I + +K+++ 
Sbjct: 68  NKLDLFLNHEIEISYKEANVILFVTTMDKELDANDFEIINLIKEANKENIILVISKAEMA 127

Query: 333 STYT--EEYDHL------------ISSFTGEGLEELINKIKSILSNK 365
                 +E  H             IS+     +++LI+ IK+ L   
Sbjct: 128 KNQDQIDERIHFLKKHLVFKDVVQISALHAINIDKLISTIKNYLHKD 174


>gi|256832767|ref|YP_003161494.1| GTP-binding protein Era [Jonesia denitrificans DSM 20603]
 gi|256686298|gb|ACV09191.1| GTP-binding protein Era [Jonesia denitrificans DSM 20603]
          Length = 314

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +L E  R+G+   ++G  NAGKS+L NAL  + +AI  + P TTR  +   ++ E   + 
Sbjct: 11  ELPEGHRSGF-ACLVGRPNAGKSTLTNALVGQKIAITANKPQTTRHTIRGIVNREDAQLI 69

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           + DT G+     ++ +         +   D+++     + K
Sbjct: 70  LVDTPGLHRPRTLLGERLNDLVLSTLSEVDVVVFCLPADQK 110


>gi|255538758|ref|XP_002510444.1| GTP-binding protein hflx, putative [Ricinus communis]
 gi|223551145|gb|EEF52631.1| GTP-binding protein hflx, putative [Ricinus communis]
          Length = 541

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 98/266 (36%), Gaps = 24/266 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++++  M  +L  L   W       ++  +      ++ +V     +  +  
Sbjct: 236 AATHEASLQVALAQMEYQLPRLTRMWTH--LERQAGGKVKGMGEKQIEVDKRILRTQIGV 293

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +      + +H  Q +          + ++G++NAGKS+L N L   +V +  D    T 
Sbjct: 294 LKKELESVRNHRKQYRNRRTSVPVPVVSLVGYTNAGKSTLLNQLTGANV-LAEDRLFATL 352

Query: 256 DVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D  T  + +  G    ++DT G  +          + T  E+  + L++ + +I+     
Sbjct: 353 DPTTRRVQMKNGNEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAE 412

Query: 315 SFPKNIDFIF------------IGTKSDLYSTYTE--------EYDHLISSFTGEGLEEL 354
                +D +             +  K D  S  +E        +    IS+  G+GL+E 
Sbjct: 413 QQIDAVDRVLSELDVASISKLMVWNKVDRVSNPSEIKLEAEKRQDVVCISALGGDGLQEF 472

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHL 380
              ++  L +    +   +P  K  L
Sbjct: 473 CIAVQEKLKDSMVWVEALVPFEKGDL 498


>gi|169630125|ref|YP_001703774.1| GTP-binding protein HflX [Mycobacterium abscessus ATCC 19977]
 gi|169242092|emb|CAM63120.1| Probable GTP-binding protein HflX [Mycobacterium abscessus]
          Length = 464

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 86/251 (34%), Gaps = 37/251 (14%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----A 245
           +E ++ +     D+       +   +  +   + I+G++NAGKSSL NA+    V    A
Sbjct: 214 RERMSKLRREIRDMKKVRDTKRSRRLESDVPSVAIVGYTNAGKSSLLNAITGAGVLVQDA 273

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           +   +  TTR       D +G    I+DT G          E  + T  EV +ADL++ +
Sbjct: 274 LFATLEPTTR---RGTFD-DGREFVITDTVGFVRHLPTQLVEAFRSTLEEVADADLLVHV 329

Query: 306 KEINSKKEISFPKNIDFI----------------FIGTKSDLYSTY-------TEEYDHL 342
            + +    ++  + +  +                 +  K D                   
Sbjct: 330 VDGSDMAPLAQIEAVRTVIGEVVADHDASAAPELLVINKVDAAGDLALAQLRRALPKALF 389

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH------LSQTVRYLEMASLN 396
           +S+ TGEG+  L   I   +      +   IP  +  L          Q+  +L   +  
Sbjct: 390 VSAHTGEGIATLREAIAEAVPRGDVPVDVVIPYERGDLVARIHTEGQVQSTEHLADGTRV 449

Query: 397 EKDCGLDIIAE 407
                  + A 
Sbjct: 450 VGRVPRALAAV 460


>gi|240112364|ref|ZP_04726854.1| GTP-binding protein Era [Neisseria gonorrhoeae MS11]
          Length = 307

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 30/213 (14%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +     R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 2   DIETFLAGERAAGGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 60

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----------ENADLILLLKEINSK 311
              +       DT G +        + + +   E             A   + L + +  
Sbjct: 61  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVVVFVVEA---MRLTDADRV 117

Query: 312 KEISFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELI 355
                PK+   I +  K D                + + +       +S+  G  +  L+
Sbjct: 118 VLKQLPKHTPVILVINKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLL 177

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             +K  L       P  + + K   +   + VR
Sbjct: 178 ELLKPYLPESVPMYPEDMVTDKSARFLAMEIVR 210


>gi|168183662|ref|ZP_02618326.1| GTP-binding protein [Clostridium botulinum Bf]
 gi|237797042|ref|YP_002864594.1| GTP-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|182673255|gb|EDT85216.1| GTP-binding protein [Clostridium botulinum Bf]
 gi|229263544|gb|ACQ54577.1| GTP-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 399

 Score = 76.8 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 19/173 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           N   I  +G +N+GKSSL NA+  +D++IV+ I GTT D ++  ++L     V  +DTAG
Sbjct: 8   NRIHITFIGKTNSGKSSLMNAIIGQDISIVSPIEGTTTDPVSKSMELIPLGPVLFTDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           + +  ++  K  I++T   +   D  + +          + K        NI +I +  K
Sbjct: 68  LEDNTELG-KVRIEKTLNTLLKTDFAIYVMSAKDIDINLYKKTINKFKQQNISYITVINK 126

Query: 329 SDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            D     T        E    +SS     +  L + I  ILS    K   +I 
Sbjct: 127 IDTVDKNTVNELKKIIENPIFVSSNDINSILNLKDSIIEILSR--SKEDDTII 177


>gi|326384487|ref|ZP_08206167.1| GTP-binding proten HflX [Gordonia neofelifaecis NRRL B-59395]
 gi|326196832|gb|EGD54026.1| GTP-binding proten HflX [Gordonia neofelifaecis NRRL B-59395]
          Length = 499

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 94/254 (37%), Gaps = 36/254 (14%)

Query: 188 SSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDV 244
             + +   +  L+ +I         K     R G   + ++G++NAGKSSL NA+    V
Sbjct: 240 DRRRIRERMAKLRKEIRGMKTARSVKRAARRRGGVPALTVVGYTNAGKSSLVNAMTGSGV 299

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D  T    L +G+ V  +DT G          E  + T  E  +ADL++
Sbjct: 300 -LVQDALFATLDPTTRRAQLADGHEVVFTDTVGFVRHLPTQLVEAFRSTLEEAVDADLLV 358

Query: 304 LLKEINSK---KEISFPKN-------------IDFIFIGTKSDLYSTYT-----EEYD-- 340
            + +        +IS  +                 + +  K D     T      EY   
Sbjct: 359 HVVDGADPFPANQISAVRQVLGDVLAEEKRPAPPEMLVINKIDAVDGLTMTALRGEYPDA 418

Query: 341 HLISSFTGEGLEELINKIKSILS----NKFKKLPFS---IPSHKRHLYHLSQTVRYLEMA 393
             +S+ TGEGL+ L   I   L     +   ++PFS   + S      H+  T  + E  
Sbjct: 419 QFVSARTGEGLDGLFAAITEFLQRDDVDAVLQVPFSRGEVISRLHQQAHVIDT-EHNETG 477

Query: 394 SLNEKDCGLDIIAE 407
           +         + AE
Sbjct: 478 TRMRVRMPAALAAE 491


>gi|304315009|ref|YP_003850156.1| GTPase [Methanothermobacter marburgensis str. Marburg]
 gi|302588468|gb|ADL58843.1| predicted GTPase [Methanothermobacter marburgensis str. Marburg]
          Length = 336

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 22/177 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + + +VI G  N GKS+L   L   +   V D P TT+ +    L+ +   +++ DT G+
Sbjct: 161 DAFTVVIAGFPNVGKSTLLRTLTGAE-PEVADYPFTTKGIQIGHLERKWRKIQVIDTPGL 219

Query: 278 RETDDIVEKEGIKRTFLEVEN-ADLILLLKEINSKKEISFPKNIDFIF------------ 324
            +           +  + +EN AD+IL + + +     +                     
Sbjct: 220 LDRPVEDMNNIELQAMVALENIADVILFIFDASETCGYTLENQYSLYLGIKGVFDTPIIT 279

Query: 325 IGTKSDLYS--TYTEEYDH------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           +  K DL     Y EEY +      ++S+F G G+ E++ K++ +   +  K   ++
Sbjct: 280 VFNKMDLAENVKYLEEYINMVEEPLMVSAFQGRGVSEIVKKLEGLYEKETGKTHDNV 336


>gi|84496882|ref|ZP_00995736.1| putative ATP/GTP-binding protein [Janibacter sp. HTCC2649]
 gi|84383650|gb|EAP99531.1| putative ATP/GTP-binding protein [Janibacter sp. HTCC2649]
          Length = 493

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 90/250 (36%), Gaps = 28/250 (11%)

Query: 186 NFSSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
               + +   +  LK DI+   +H    +          + I G++NAGKSS+ N L   
Sbjct: 238 ELDRRRINTRVAKLKRDIAGMKTHRDTKRGSRRANAIPSVAIAGYTNAGKSSILNRLTGA 297

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G     +DT G          E  + T  EV  +DL+
Sbjct: 298 GVLVQNQLFATLDPTVRRSETPDGREFTFTDTVGFVRHLPHQLVEAFRSTLEEVAESDLL 357

Query: 303 LLLKEINSKK---EISFPK---------NIDFIFIGTKSDLYST-------YTEEYDHLI 343
           L + + +      +IS  +         ++  + +  K+D+  +         E++  ++
Sbjct: 358 LHVVDGSHPDPEGQISAVRSVLADVDATDVKEVIVVNKADIADSEVIDRLRRNEKHVIVV 417

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ------TVRYLEMASLNE 397
           S+ TG G++ L+  I   L      +   +P  +  L              ++   +   
Sbjct: 418 SARTGAGMDALVALIADELPQPDISVDVLVPYDRGDLVSRLHEEGEILASEHVSEGTHVT 477

Query: 398 KDCGLDIIAE 407
                D+ AE
Sbjct: 478 ARVNADLAAE 487


>gi|283456413|ref|YP_003360977.1| hflX GTP-binding protein hflX [Bifidobacterium dentium Bd1]
 gi|283103047|gb|ADB10153.1| hflX GTP-binding protein hflX [Bifidobacterium dentium Bd1]
          Length = 482

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 25/245 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + + I  L+  I+      + K G   R G   + ++G++NAGKSSL N L   
Sbjct: 225 EMDRRVIRSRIAKLRRQIAEMAPAREVKRGSRRRFGLPTVAVVGYTNAGKSSLTNRLTGS 284

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G L    DT G          E  K T  EV  ADLI
Sbjct: 285 AELVENALFATLDTAVRRARAKDGRLYAYVDTVGFVRRLPTQLIEAFKSTLEEVAEADLI 344

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEYD-------HL 342
           + + + +                +I     I  I    KSDL      E         ++
Sbjct: 345 VHVVDGSHPDPFSQIDAVNDVLADIDGVGAIPTIVAFNKSDLMGEAVRERIEALMPDAYV 404

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+++GEG++EL   I+S+L      +   +P     L  +S+   Y ++ ++  +D G+
Sbjct: 405 VSAYSGEGVDELRTGIESMLPTPNVHVEALLPYSAGSL--VSRVREYGKVLAVEYRDDGM 462

Query: 403 DIIAE 407
            + AE
Sbjct: 463 MLRAE 467


>gi|241068611|ref|XP_002408485.1| GTP-binding protein EngA, putative [Ixodes scapularis]
 gi|215492473|gb|EEC02114.1| GTP-binding protein EngA, putative [Ixodes scapularis]
          Length = 317

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 85/204 (41%), Gaps = 35/204 (17%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           +  I ++I+    G+ ++    IV+ G  NAGKS+  NAL   +  +     G TR+ + 
Sbjct: 34  EESIETNIADPIKGDCLQ----IVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIE 89

Query: 260 IDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEI---NSKKE 313
           ID   +   +K+ DTAG+R+     + +EK     T   ++ A+ ++L+ +      +++
Sbjct: 90  IDWQYKNNHIKLIDTAGLRKKSTITESLEKLSASDTINSIKFANTVILMIDALVPLKQQD 149

Query: 314 ISFP-----KNIDFIFIGTKSDLYSTYTEEYDH--------------------LISSFTG 348
           ++       +    + +  K DL     +E                        IS+   
Sbjct: 150 LNIASHVVNEGRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQVKGVPVLFISAINK 209

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           + +E++++    I     KK+  S
Sbjct: 210 QNIEQVLDACLKIYKIWNKKITTS 233


>gi|224129530|ref|XP_002328739.1| predicted protein [Populus trichocarpa]
 gi|222839037|gb|EEE77388.1| predicted protein [Populus trichocarpa]
          Length = 560

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 23/150 (15%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           +D++  + + KL        ++ I+G  N GKS+L N L +++  +V    G TRD +  
Sbjct: 246 DDVAGEVDESKL------PLQLAIIGRPNVGKSTLLNTLLQEERVLVGPEVGLTRDSVRT 299

Query: 261 DLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSK------ 311
               EG  + + DTAG  +    +       + ++   +  A ++ L+ +          
Sbjct: 300 QFQYEGRTIYLVDTAGWLQRTGLEKGPSSLSVMQSRKNLMRAQVVALVLDAEEVVKARRS 359

Query: 312 --------KEISFPKNIDFIFIGTKSDLYS 333
                      +  +    + I  K DL  
Sbjct: 360 MTHAEVVIARRAVEEGRGLVVIVNKMDLLK 389



 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIP--GTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++I+G  N GKS+L+N L ++  A+V + P    TRD+      L     K+ D+AG+ E
Sbjct: 54  VIIVGRPNVGKSALYNRLIRRREALVYNTPDDHVTRDIREGIAKLGDLRFKVLDSAGL-E 112

Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINS 310
           T+     + +     T   +      + L ++ +
Sbjct: 113 TEAASGSILQRTTSMTANVLARTQFAVFLIDVRA 146


>gi|183983654|ref|YP_001851945.1| GTP-binding protein Era [Mycobacterium marinum M]
 gi|183176980|gb|ACC42090.1| GTP-binding protein Era [Mycobacterium marinum M]
          Length = 300

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 83/234 (35%), Gaps = 33/234 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NAL    VAI +  P TTR  +   +  E + + + DT G+    
Sbjct: 10  VCLVGRPNTGKSTLTNALVGTKVAITSMRPQTTRHTIRGIVHRESFQIILVDTPGLHRPR 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIGTKSDL 331
            ++ K             D+I L    +           ++  +    +  + I TK D 
Sbjct: 70  TLLGKRLNDLVRDTYSEVDVIGLCIPADESIGPGDRWIIEQIAATAPKVKLVVIVTKIDK 129

Query: 332 YST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                                    +S+ TG  +E LI+ +   L       P    + +
Sbjct: 130 VPKDQVAAQLVAVSELVTNSAEIVPVSAVTGAQVEVLIDVLARTLPQGPAYYPDGELTDE 189

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
                +++ +R   +  +++ +    +           + +++     E L+D+
Sbjct: 190 PEEVLMAELIREAALEGVHD-ELPHSLAVV--------IDEVSPREGREDLIDV 234


>gi|139439631|ref|ZP_01773044.1| Hypothetical protein COLAER_02071 [Collinsella aerofaciens ATCC
           25986]
 gi|133774972|gb|EBA38792.1| Hypothetical protein COLAER_02071 [Collinsella aerofaciens ATCC
           25986]
          Length = 429

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 97/272 (35%), Gaps = 24/272 (8%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           + ++T   R          L          L   ++       F + E       + + N
Sbjct: 122 LHAQTREGRLQVQLAQLQYLLPRLRGMWSHLAKEQTRGGIGSRFGQGESQLEVDRRLIRN 181

Query: 195 DILFLKNDI---SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  L+ ++              I    +++ + G++NAGKS+L N L    V +  D  
Sbjct: 182 KIAALRRELKQVEQRRDVQSKSRIESPAFRVALAGYTNAGKSTLLNRLTGSTV-LSQDKL 240

Query: 252 GTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D  T    L  G  + I+DT G  +       +  K T  EV  ADLIL + + + 
Sbjct: 241 FATLDPTTRSYRLPGGRGMTITDTVGFIQKLPHGLVDAFKSTLSEVLGADLILKVVDASD 300

Query: 311 KKEISFPKNIDFIF------------IGTKSDLYSTYTE-------EYDHLISSFTGEGL 351
           +      + +D +             +  K DL  +              L S+ TGEGL
Sbjct: 301 EDYERQLEAVDRVLDEIGAGERLTLTVFNKIDLLDSVDRLSFRRRYPEAVLFSAQTGEGL 360

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           ++L+++I    +     L   IP  +  L  L
Sbjct: 361 DDLVDRIAREAAATDVLLSADIPYREGALITL 392


>gi|254504147|ref|ZP_05116298.1| GTP-binding proten HflX [Labrenzia alexandrii DFL-11]
 gi|222440218|gb|EEE46897.1| GTP-binding proten HflX [Labrenzia alexandrii DFL-11]
          Length = 431

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 99/253 (39%), Gaps = 34/253 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               +++   I+ L+  + S     +L    R       + ++G++NAGKS+LFN L + 
Sbjct: 163 EADRRQIQERIIALQKQLESVRRTRELHRKKRKKIPQPVVALVGYTNAGKSTLFNRLTES 222

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V    D+   T D     + L  G  + +SDT G             + T  EV  ADL
Sbjct: 223 EV-FAKDLLFATLDPTLRKITLPHGREIILSDTVGFISDLPTHLVAAFRATLEEVLEADL 281

Query: 302 ILLLKEIN---------------SKKEISFPKNIDFIFIGTKSD---------LYSTYTE 337
           IL +++I+                +  +        I +  K D         L S    
Sbjct: 282 ILHVRDISHADTDAQAEDVQKTLEELGVDALTGAPIIEVWNKIDLLDKDYRAKLLSEEQG 341

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
           E    +S+ TGEG+E L  ++ S ++     L   +P  +  L       +  +MA + E
Sbjct: 342 EGPVALSAVTGEGIEHLSARVDSFMARHDDILSVRVPVAEGALIA-----KLYQMAEVLE 396

Query: 398 KDCGLDIIAENLR 410
           +  G + +   +R
Sbjct: 397 RSDGEEYVIAEVR 409


>gi|217967468|ref|YP_002352974.1| GTP-binding proten HflX [Dictyoglomus turgidum DSM 6724]
 gi|217336567|gb|ACK42360.1| GTP-binding proten HflX [Dictyoglomus turgidum DSM 6724]
          Length = 405

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 101/236 (42%), Gaps = 24/236 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               +++   I  LK ++     + ++    R N  +I ++G++NAGKS+LFN L   +V
Sbjct: 151 EIDRRKIRKRIHTLKKELEEIKREREVQRKQRLNLPQIALVGYTNAGKSTLFNLLTGANV 210

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D+   T D     ++    + V ISDT G             + T  E+   DLIL
Sbjct: 211 -RAEDLLFATLDPTVRKVNFKNNWEVLISDTVGFIRNLPEELLTAFRATLEEIYYVDLIL 269

Query: 304 LLKEINSK---KEISF---------PKNIDFIFIGTKSDLYST-----YTEEYDHLISSF 346
            + +I+ K   K+I            ++   I +  K DL S        +E D+  S F
Sbjct: 270 HVIDISDKDFRKQIEVVESILEDMGIEDKTIIRVYNKIDLLSKEEVRYLKQELDYKPSVF 329

Query: 347 ----TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                G G+E+L + I + L    ++   +IP +K +L+   +   Y+E  +  E 
Sbjct: 330 ISAKEGIGIEKLKDLIVNELLKGVRRYKINIPYNKFNLFQKYRGKLYIEEENYKEN 385


>gi|322418933|ref|YP_004198156.1| ferrous iron transport protein B [Geobacter sp. M18]
 gi|320125320|gb|ADW12880.1| ferrous iron transport protein B [Geobacter sp. M18]
          Length = 663

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 7/127 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GKS LFNAL    V  V++ PGT+ +V   +  + G   ++ DT G+   
Sbjct: 23  KVALVGNPNVGKSVLFNALTGAYVT-VSNYPGTSVEVSRGNAVINGEEFEVIDTPGMYSI 81

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYST 334
             I E+E + R  L  E   L+L + +  + + +           +  + +    D  + 
Sbjct: 82  LPITEEERVAREILLTERPHLVLHVLDARNLERMLPMTLQLIEAELPVVLVVNIMDEAAR 141

Query: 335 YTEEYDH 341
              E D 
Sbjct: 142 MGLEIDI 148


>gi|88597072|ref|ZP_01100308.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190761|gb|EAQ94734.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 84-25]
          Length = 291

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKE----ISFPKNIDFIFIGTKSD 330
           G+ E+   + +  ++     + + D+IL +  + +S K+    +S    +  I    K D
Sbjct: 60  GLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENFLSLNPQVPHIITLNKVD 119

Query: 331 LYSTYT 336
           L    T
Sbjct: 120 LTDNAT 125


>gi|86149793|ref|ZP_01068022.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|218562306|ref|YP_002344085.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|13959362|sp|Q9PHL1|ERA_CAMJE RecName: Full=GTPase Era
 gi|85839611|gb|EAQ56871.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|112360012|emb|CAL34802.1| GTP-binding protein Era homolog [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315926778|gb|EFV06152.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 291

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKE----ISFPKNIDFIFIGTKSD 330
           G+ E+   + +  ++     + + D+IL +  + +S K+    +S    +  I    K D
Sbjct: 60  GLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENFLSLNPQVPHIITLNKVD 119

Query: 331 LYSTYT 336
           L    T
Sbjct: 120 LTDNAT 125


>gi|306822413|ref|ZP_07455791.1| GTP-binding protein HflX [Bifidobacterium dentium ATCC 27679]
 gi|309802505|ref|ZP_07696611.1| GTP-binding protein HflX [Bifidobacterium dentium JCVIHMP022]
 gi|304553958|gb|EFM41867.1| GTP-binding protein HflX [Bifidobacterium dentium ATCC 27679]
 gi|308220905|gb|EFO77211.1| GTP-binding protein HflX [Bifidobacterium dentium JCVIHMP022]
          Length = 497

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 25/245 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + + I  L+  I+      + K G   R G   + ++G++NAGKSSL N L   
Sbjct: 240 EMDRRVIRSRIAKLRRQIAEMAPAREVKRGSRRRFGLPTVAVVGYTNAGKSSLTNRLTGS 299

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G L    DT G          E  K T  EV  ADLI
Sbjct: 300 AELVENALFATLDTAVRRARAKDGRLYAYVDTVGFVRRLPTQLIEAFKSTLEEVAEADLI 359

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEYD-------HL 342
           + + + +                +I     I  I    KSDL      E         ++
Sbjct: 360 VHVVDGSHPDPFSQIDAVNDVLADIDGVGAIPTIVAFNKSDLMGEAVRERIEALMPDAYV 419

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+++GEG++EL   I+S+L      +   +P     L  +S+   Y ++ ++  +D G+
Sbjct: 420 VSAYSGEGVDELRTGIESMLPTPNVHVEALLPYSAGSL--VSRVREYGKVLAVEYRDDGM 477

Query: 403 DIIAE 407
            + AE
Sbjct: 478 MLRAE 482


>gi|269956055|ref|YP_003325844.1| GTP-binding proten HflX [Xylanimonas cellulosilytica DSM 15894]
 gi|269304736|gb|ACZ30286.1| GTP-binding proten HflX [Xylanimonas cellulosilytica DSM 15894]
          Length = 515

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 94/257 (36%), Gaps = 30/257 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + + N +  L+ +I           + R       + I G++NAGKSSL NAL   
Sbjct: 259 ELDRRRIRNRMAKLRREIKEMAPARATKRVERKRHAIPNVAIAGYTNAGKSSLLNALTDA 318

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G +  ++DT G          E  + T  EV +A L+
Sbjct: 319 GVLVENALFATLDPTVRRATTDDGRVYTLADTVGFVRHLPHQLVEAFRSTLEEVGDAALL 378

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYS-------TYTEEYDHL 342
           L + + +                EI     +  + +  K+D+            E+   +
Sbjct: 379 LHVVDASHPDPEGQIAAVREVLAEIPGIDAVREVVVLNKADVADPEVIGRIQRREKRTVV 438

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS------HKRHLYHLSQTVRYLEMASLN 396
           +S+ TGEG+ EL + I   L      +   +P       ++ H +       +L   +L 
Sbjct: 439 VSAHTGEGIAELRHLIADELPRPEVAIDLVVPYSRGDLVNRVHQFGELDHEEHLATGTLL 498

Query: 397 EKDCGLDIIAENLRLAS 413
                  + AE L+ A+
Sbjct: 499 RGRVDEALAAE-LQRAA 514


>gi|171742500|ref|ZP_02918307.1| hypothetical protein BIFDEN_01612 [Bifidobacterium dentium ATCC
           27678]
 gi|171278114|gb|EDT45775.1| hypothetical protein BIFDEN_01612 [Bifidobacterium dentium ATCC
           27678]
          Length = 497

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 25/245 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + + I  L+  I+      + K G   R G   + ++G++NAGKSSL N L   
Sbjct: 240 EMDRRVIRSRIAKLRRQIAEMAPAREVKRGSRRRFGLPTVAVVGYTNAGKSSLTNRLTGS 299

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +G L    DT G          E  K T  EV  ADLI
Sbjct: 300 AELVENALFATLDTAVRRARAKDGRLYAYVDTVGFVRRLPTQLIEAFKSTLEEVAEADLI 359

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEYD-------HL 342
           + + + +                +I     I  I    KSDL      E         ++
Sbjct: 360 VHVVDGSHPDPFSQIDAVNDVLADIDGVGAIPTIVAFNKSDLMGEAVRERIEALMPDAYV 419

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+++GEG++EL   I+S+L      +   +P     L  +S+   Y ++ ++  +D G+
Sbjct: 420 VSAYSGEGVDELRTGIESMLPTPNVHVEALLPYSAGSL--VSRVREYGKVLAVEYRDDGM 477

Query: 403 DIIAE 407
            + AE
Sbjct: 478 MLRAE 482


>gi|294139257|ref|YP_003555235.1| GTP-binding protein HflX [Shewanella violacea DSS12]
 gi|293325726|dbj|BAJ00457.1| GTP-binding protein HflX [Shewanella violacea DSS12]
          Length = 432

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 61/300 (20%), Positives = 108/300 (36%), Gaps = 28/300 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTYEGKLQVELAQLRHMSTRLIRGWTH-LERQKGGIGMRGPGETQLETDRRLLRGRMG 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     Q +          + ++G++NAGKS+LFN+L   DV    D    T
Sbjct: 173 TINKRLAKVDKQREQSRRARSRSEQPTVSLVGYTNAGKSTLFNSLTVSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
            D     LDL    + ++DT G             K T  E   ADL+L + + +     
Sbjct: 232 LDPTLRKLDLPDGAIILADTVGFIRHLPHDLVAAFKSTLQETREADLLLHIVDCHDDNME 291

Query: 312 ---KEISF------PKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEE 353
              +++           I  + +  K DL    +   D+          +S+   +GL++
Sbjct: 292 DNFEQVQLVLKEIGADEIPQLVVCNKIDLLEDVSPRIDYNDEGVPTRVWVSAQQQKGLDQ 351

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD-IIAENLRLA 412
           L   I  I+     +L   IP+   H  +L Q  R L+     E D   D I++  L  A
Sbjct: 352 LKEAINQIVGRATLELTLRIPATAGH--YLGQFYR-LDAIQQKEFDDLGDCILSVRLLEA 408


>gi|254673608|emb|CBA09133.1| GTP-binding protein Era [Neisseria meningitidis alpha275]
 gi|325131859|gb|EGC54559.1| GTP-binding protein Era [Neisseria meningitidis M6190]
 gi|325135721|gb|EGC58333.1| GTP-binding protein Era [Neisseria meningitidis M0579]
 gi|325143925|gb|EGC66235.1| GTP-binding protein Era [Neisseria meningitidis M01-240013]
          Length = 311

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 75/219 (34%), Gaps = 42/219 (19%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +     R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 6   DIETFLAGERAAGGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 64

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----------------ENADLILLL 305
              +       DT G +        + + +   E                  +AD ++L 
Sbjct: 65  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVL- 123

Query: 306 KEINSKKEISFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGE 349
                      PK+   I +  K D                + + +       +S+  G 
Sbjct: 124 --------KQLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGL 175

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            +  L+  +K  L       P  + + K   +   + VR
Sbjct: 176 RIANLLELLKPYLPESVPMYPEDMVTDKSARFLAMEIVR 214


>gi|21228472|ref|NP_634394.1| GTP-binding protein [Methanosarcina mazei Go1]
 gi|20906954|gb|AAM32066.1| GTP-binding protein [Methanosarcina mazei Go1]
          Length = 338

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 83/204 (40%), Gaps = 22/204 (10%)

Query: 183 DVQNFSSKEVLNDILFLKNDISS-HISQGKLGEIIR------NGYKIVILGHSNAGKSSL 235
           D+     KE    +  + N I+   +   +   I+R      +   IVI G+ N GKSS 
Sbjct: 117 DIPEPVRKEAFGRLASIINSINKDLLFLNEARNILRKLPDVQDEPTIVIAGYPNVGKSSF 176

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            + +      I    P TT+ V       +G   ++ DT G+ +       +  ++    
Sbjct: 177 VSKITGATPEI-APYPFTTKGVTIGHFTRDGVRYQVMDTPGLLDRPMAERNDIERQAITA 235

Query: 296 VENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYT-EEYDH 341
           +   D ++++    S+              EI    N+  + +  K+D       +E + 
Sbjct: 236 IHYLDAVVMVVIDPSESCGYELQDQRRLLAEIRENFNLPLLVVANKADRPEFMKMDEVEL 295

Query: 342 LISSFTGEGLEELINKIKSILSNK 365
            +S+ TGEG+E++++++  ++  K
Sbjct: 296 NMSTITGEGIEQVMDRLLEMIEEK 319


>gi|94502128|ref|ZP_01308629.1| GTP-binding protein Era [Oceanobacter sp. RED65]
 gi|94425730|gb|EAT10737.1| GTP-binding protein Era [Oceanobacter sp. RED65]
          Length = 299

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 67/190 (35%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-- 279
           I I+G  N GKS+L N +  + ++I +  P TTR  +              DT G+ E  
Sbjct: 9   IAIVGRPNVGKSTLLNNILGQKLSITSRKPQTTRHQILGMKTTANVQAIYVDTPGLHEGY 68

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE-------INSKKEISFPKNIDFIFIGTKSDLY 332
           ++  + +   K     + + DL++ L +         S  E      +  I +  K D  
Sbjct: 69  SEKALNRYINKVATTAINDVDLVVFLIDRTKWMPEDQSVLEKIQASKVPCILVINKLDHL 128

Query: 333 ST------YTEEYDHLI--------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +       Y EE             S+ TG  + EL   I   L            + + 
Sbjct: 129 ADKQSLLPYLEEVSQRHDFKEVFPISAKTGYNVAELEAAIARQLPEGMHFYDEDQFTDRS 188

Query: 379 HLYHLSQTVR 388
             +  ++ VR
Sbjct: 189 ARFLAAELVR 198


>gi|297171214|gb|ADI22222.1| GTPase [uncultured Gemmatimonadales bacterium HF0200_34B24]
 gi|297171330|gb|ADI22335.1| GTPase [uncultured actinobacterium HF0500_01C15]
          Length = 309

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 25/174 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N    + ++IVT    TT   +T         +   DT G+ ET 
Sbjct: 16  VALVGRPNAGKSTLLNRFVGEHLSIVTSKAQTTWQRVTGIRTKGTDQLIFLDTPGLLETR 75

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK---------NIDFIFIGTKSD-- 330
           D+++   +      +  AD+ LL+ +   +   +            +     +  K D  
Sbjct: 76  DLLQHAMLGAALEALAEADVALLVVDTTRRPTQTDTDRILAAFSEIHRPLHIVLNKLDQA 135

Query: 331 ------LYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                  + +++EE      H +S+ TG+G++ L+N    ++     + PF  P
Sbjct: 136 NLSSIEAWKSWSEEGLSGQVHSVSAKTGKGVDSLLN----VICEDLPEGPFLYP 185


>gi|291522706|emb|CBK80999.1| GTP-binding protein HflX [Coprococcus catus GD/7]
          Length = 419

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 23/224 (10%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
             + L+ +   I       ++ +V     +E ++ +     D+  H    +         
Sbjct: 143 MRNSLSRLGGGIGTRGPGEKKLEVDRRLIRERISQLKRELEDVKRHREVARQQRQRNQIP 202

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279
              I+G++NAGKS+L N L    V +  D    T D  T +L L +G  + ++DT G   
Sbjct: 203 VAAIVGYTNAGKSTLLNRLTGAGV-LEEDKLFATLDPTTRNLTLDDGQELLLTDTVGFIH 261

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGT 327
                  +  + T  E + AD+++ + + ++ +                 K+   I +  
Sbjct: 262 KLPHHLVDAFRSTLEEAKYADILIHMVDASNPQAEMHMHVVYETLAALDIKDKKIITVFN 321

Query: 328 KSDLY---------STYTEEYDHLISSFTGEGLEELINKIKSIL 362
           K+DL            +  +Y    S   G GL+ L++ +++IL
Sbjct: 322 KTDLIRDQESLVSLKDFRADYTVTASVKQGTGLDALLSTVQTIL 365


>gi|259090125|pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Gdp Form Ii
 gi|259090126|pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Gmppnp Form
 gi|259090127|pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Gmppnp Form
 gi|259090128|pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Apo Form
 gi|259090129|pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Apo Form
          Length = 258

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 19/159 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ + G  N GK+SLFNAL       V + PG T +        +GY + + D  G   
Sbjct: 6   VKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------------ISFPKNIDFI 323
                  E I R +L   +ADL++L+ +  + ++                ++     +  
Sbjct: 65  LGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAK 124

Query: 324 FIGTKSDLYS--TYTEEYDHLISSFTGEGLEELINKIKS 360
             G K D Y    +        SS TGEGLEEL  KI  
Sbjct: 125 KTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVE 163


>gi|302528834|ref|ZP_07281176.1| GTP-binding protein Era [Streptomyces sp. AA4]
 gi|302437729|gb|EFL09545.1| GTP-binding protein Era [Streptomyces sp. AA4]
          Length = 299

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 73/202 (36%), Gaps = 24/202 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+    +G  NAGKS+L NAL    VAI +  P TTR  +   +  +   + I D
Sbjct: 3   EPHRSGF-ACFVGRPNAGKSTLTNALVGTKVAITSSKPQTTRHAIRGIVHRDDAQLVIID 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFI 323
           T G+     ++ +             D++      N K          +     +    I
Sbjct: 62  TPGLHRPRTLLGQRLNDVVHETWSEVDVVGFCVPANEKIGPGDRFIAAELKKIARRPPVI 121

Query: 324 FIGTKSDLY--STYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
            + TK+DL       E+               +S+  G  ++ + + +   L    +  P
Sbjct: 122 GVVTKTDLVKPEQVAEQLVALQEVMEFADLVPVSAVDGFQVQTVADLLVQRLPEGPQLYP 181

Query: 371 FSIPSHKRHLYHLSQTVRYLEM 392
               + +     +++ +R   +
Sbjct: 182 GGELTDEPEQTLVAELIREAAL 203


>gi|238920904|ref|YP_002934419.1| GTP-binding protein Era [Edwardsiella ictaluri 93-146]
 gi|269140066|ref|YP_003296767.1| GTP-binding protein [Edwardsiella tarda EIB202]
 gi|238870473|gb|ACR70184.1| GTP-binding protein Era, putative [Edwardsiella ictaluri 93-146]
 gi|267985727|gb|ACY85556.1| GTP-binding protein [Edwardsiella tarda EIB202]
 gi|304559894|gb|ADM42558.1| GTP-binding protein Era [Edwardsiella tarda FL6-60]
          Length = 301

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTHWTPDDEMVLNKLRDLKCPVILAINKVDNVV 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T    H+               S+  G  ++ +   ++  L       P    + +  
Sbjct: 131 DKTALLPHIQFLSQQMNFLDVVPISAEKGTNVDAIARIVRQRLPQAEHHFPEEYITDRSQ 190

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 191 RFMASEIIREKLMRFLGEE 209


>gi|58617284|ref|YP_196483.1| GTP-binding protein Era [Ehrlichia ruminantium str. Gardel]
 gi|81311297|sp|Q5FFN4|ERA_EHRRG RecName: Full=GTPase Era
 gi|58416896|emb|CAI28009.1| GTP-binding protein Era homolog [Ehrlichia ruminantium str. Gardel]
          Length = 296

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 21/157 (13%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G +NAGKS+L N L  + VA VT    TTR  +    + E   +   DT GI     
Sbjct: 12  AIVGTTNAGKSTLVNVLVGQKVAAVTPKVQTTRVRMHAVSNHENVQLIFIDTPGIFSPKT 71

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSDL--- 331
            +EK  +K  ++ ++  + +++L ++ +      KK I   K  N++ I +  K D+   
Sbjct: 72  KLEKFLVKHAWMSLKGIENVIVLVDVKNYLNQHLKKIIDRIKHSNLNAILVLNKIDIVHQ 131

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKI 358
                     YS Y       IS+  G G+++L++ +
Sbjct: 132 SIVSEVIEYMYSLYKFSKAFTISALYGIGIDKLVDYL 168


>gi|325920676|ref|ZP_08182586.1| GTP-binding protein Era [Xanthomonas gardneri ATCC 19865]
 gi|325548866|gb|EGD19810.1| GTP-binding protein Era [Xanthomonas gardneri ATCC 19865]
          Length = 285

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 82/224 (36%), Gaps = 29/224 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDD 282
           ++G  N GKS+L NAL    V+IV++ P TTR  L          + + DT G+ RE   
Sbjct: 1   MIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLALVDTPGLHREQKR 60

Query: 283 IVEKEGIKRTFLEVENADLILLLKEI--------------NSKKEISFPKNIDFIFIGTK 328
            + +   +     +E  D  +L+ E               +  K            +  K
Sbjct: 61  AMNRVMNRAARGSLEGVDAAVLVIEAGRWDEEDTLAFKVLSDSKVPVVLVVNKVDRLKDK 120

Query: 329 SDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           + L+    +          H +S+   +GLE L+  +  ++            + +   +
Sbjct: 121 TALFPFLAQVSEGRTFAAVHPVSALKRKGLEALVGDLLKLVPEAEAMFGEDEITDRSQRF 180

Query: 382 HLSQTVRYLEMASLNEK-----DCGLDIIAENLRLASVSLGKIT 420
              + VR   M  L E+        ++  AE+   A + +G + 
Sbjct: 181 LAGELVREQLMRQLGEELPYATTVEIERFAED--GALLRIGAVI 222


>gi|300933035|ref|ZP_07148291.1| putative GTP-binding protein [Corynebacterium resistens DSM 45100]
          Length = 490

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 115/313 (36%), Gaps = 39/313 (12%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF----SEEEDVQNFSSK 190
            ++++    ++++  M   L +    W   L+                   E       +
Sbjct: 175 HAKSKEGKAQVALAQME-YLITRVRGWGGALSRQAGGRAGANGGVGLRGPGETKIEADRR 233

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSSLFNALAKKDVAIV 247
            +  D+  L+ +I+S  +   +    R+     ++ I G++NAGKSSL NAL    V +V
Sbjct: 234 RLRADMARLRKEIASMKTSRDIKRERRDSAAIAQVAIAGYTNAGKSSLINALTGAGV-LV 292

Query: 248 TDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
            D    T D  T   +L +G  V  +DT G          E  + T  EV  AD++L + 
Sbjct: 293 EDALFATLDPTTRRAELADGRAVIFTDTVGFVRHLPTQLVEAFRSTLEEVMAADVVLHVV 352

Query: 307 EINSKKEISF----------------PKNIDFIFIGTKSDLYS-------TYTEEYDHLI 343
           + +    +                        I +  K D           +  +    +
Sbjct: 353 DGSDPFPLEQIVAVNKVIGEIVEETGEHAPPEILVVNKIDKADPLVLAELRHRLDDVVFV 412

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
           S+ +GEG+ EL  +++  L++   ++   +P  +  +      +  +   S +E    L+
Sbjct: 413 SAHSGEGISELETRLELFLNSLDSQVDLHVPFDRGDVVARVHELGTVLSESYDEHGTHLE 472

Query: 404 I-----IAENLRL 411
           +     +A  L+ 
Sbjct: 473 VRLPAQVAAELKE 485


>gi|239622043|ref|ZP_04665074.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|296454044|ref|YP_003661187.1| GTP-binding protein Era [Bifidobacterium longum subsp. longum
           JDM301]
 gi|239515234|gb|EEQ55101.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|296183475|gb|ADH00357.1| GTP-binding protein Era [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 354

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 6/178 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L NAL  K +AI +  P TTR  +   L  +   + + DT 
Sbjct: 44  YRSGF-VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTP 102

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNIDFIFIGTKSDLY 332
           GI     ++ +         + + D++  L   + +    +      +   F   + D  
Sbjct: 103 GIHRPRTLLGQRLNDVVDESLADVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGT 162

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
             +      +++     G ++LINK+  I  N F      +P       +L++    L
Sbjct: 163 FKWRIPLIAIVTKIDELGRQQLINKLIEI--NDFADFSDIVPVSALKHDNLAEVKNVL 218


>gi|317482192|ref|ZP_07941214.1| GTP-binding protein Era [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916330|gb|EFV37730.1| GTP-binding protein Era [Bifidobacterium sp. 12_1_47BFAA]
          Length = 354

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 6/178 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L NAL  K +AI +  P TTR  +   L  +   + + DT 
Sbjct: 44  YRSGF-VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTP 102

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNIDFIFIGTKSDLY 332
           GI     ++ +         + + D++  L   + +    +      +   F   + D  
Sbjct: 103 GIHRPRTLLGQRLNDVVDESLADVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGT 162

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
             +      +++     G ++LINK+  I  N F      +P       +L++    L
Sbjct: 163 FKWRIPLIAIVTKIDELGRQQLINKLIEI--NDFADFSDIVPVSALKHDNLAEVKNVL 218


>gi|297156727|gb|ADI06439.1| ATP/GTP-binding protein [Streptomyces bingchenggensis BCW-1]
          Length = 502

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 102/252 (40%), Gaps = 29/252 (11%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDV 244
             + +   +  ++ +I+   +   +    R  +K+    I G++NAGKSSL N L    V
Sbjct: 243 DRRRIREKMAKMRREIAEMKTGRDIKRQERKRHKVPSVAIAGYTNAGKSSLLNRLTGAGV 302

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
            +   +  T    +       G L  ++DT G          E  + T  EV +ADLI+ 
Sbjct: 303 LVENALFATLDPTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDADLIVH 362

Query: 305 LKEINS---KKEISFPK---------NIDFIFIGTKSDLYSTY-------TEEYDHLISS 345
           + + +    +++++  +         ++  I +  K+D+            E+   ++S+
Sbjct: 363 VVDGSHPMPEEQLAAVREVIRDVGAVDVPEIVVINKADMADPLVLQRLLRVEKRALVVSA 422

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT------VRYLEMASLNEKD 399
            TG+G++EL+  I + L     ++   +P  +  L   +          +    +L +  
Sbjct: 423 RTGQGIDELLGLIDNELPRPQVEIEALVPYTQGKLVARTHAEGEVISEEHTPEGTLLKAR 482

Query: 400 CGLDIIAENLRL 411
              ++ AE LR 
Sbjct: 483 VHEELAAE-LRR 493


>gi|295698548|ref|YP_003603203.1| GTP-binding protein EngA [Candidatus Riesia pediculicola USDA]
 gi|291157395|gb|ADD79840.1| GTP-binding protein EngA [Candidatus Riesia pediculicola USDA]
          Length = 474

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 27/186 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI--------DLDLEGYLVKI 271
            K+ I+G  N GKS+L N L  ++  IV+++P TTRD + +         ++ +     +
Sbjct: 180 IKVAIVGKPNVGKSTLINKLLMENRLIVSELPETTRDNIEVIVQNSRYQQVNEKEVRYCL 239

Query: 272 SDTAGIRETDDIVEKEGIK----------------RTFLEVENADLILLLKEINSKKEIS 315
            DT+GI  T+   ++E IK                +T   ++++D+ LLL +   KK ++
Sbjct: 240 VDTSGI--TEKFWKQENIKTNPSSDQQKFSSYFGSQTIKCIKSSDITLLLLDSREKK-LT 296

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
             +N+    +      +     + D + S F     + + N++K +   +F  +      
Sbjct: 297 RSENLLIHLMIEIGSSFLIVFNKLDEIPSEFKKTFQKYIKNRMKFLNFVQFHFISALYQK 356

Query: 376 HKRHLY 381
           + R L+
Sbjct: 357 NFRDLF 362


>gi|271501620|ref|YP_003334646.1| GTP-binding protein Era [Dickeya dadantii Ech586]
 gi|270345175|gb|ACZ77940.1| GTP-binding protein Era [Dickeya dadantii Ech586]
          Length = 301

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +LI+ + E        E+   K        +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELIIFVVEGTHWTDDDEMVVNKLRDQKTPVLLAINKVDNVT 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T+   H+               S+  G  ++ +   ++  L       P    + +  
Sbjct: 131 DKTKLLPHIQMLSEKMNFLDVVPISAEKGTNVDTIAAIVRKHLPQAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 191 RFMASEIIREKLMRFLGEE 209


>gi|188577281|ref|YP_001914210.1| GTP-binding protein Era [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521733|gb|ACD59678.1| GTP-binding protein Era [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 285

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 29/224 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDD 282
           ++G  N GKS+L NAL    V+IV++ P TTR  L          + + DT G+ RE   
Sbjct: 1   MIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKR 60

Query: 283 IVEKEGIKRTFLEVENADLILLLKEI--------------NSKKEISFPKNIDFIFIGTK 328
            + +   +     +E  D  +L+ E               +  +            +  K
Sbjct: 61  AMNRVMNRAARGSLEGVDAAVLVIEAGRWDEEDTLAFRVLSDAEVPVVLVVNKVDRLKDK 120

Query: 329 SDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           + L     +          H +S+   +GLE L+  +  ++            + +   +
Sbjct: 121 TALLPFLAQVSEGRTFAAVHPVSALKRKGLEALVGDLLKLVPEAEAMFGEDEITDRSQRF 180

Query: 382 HLSQTVRYLEMASLNEK-----DCGLDIIAENLRLASVSLGKIT 420
              + VR   M  L E+        ++  AE+   A + +G + 
Sbjct: 181 LAGELVREQLMRQLGEELPYATTVEIERFAED--GALLRIGAVI 222


>gi|157963353|ref|YP_001503387.1| small GTP-binding protein [Shewanella pealeana ATCC 700345]
 gi|157848353|gb|ABV88852.1| small GTP-binding protein [Shewanella pealeana ATCC 700345]
          Length = 431

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 93/266 (34%), Gaps = 24/266 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTFEGKLQVELAQLRHMSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIR 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     Q +      +   + ++G++NAGKS+LFN L   DV    D    T
Sbjct: 173 TINRRLEKVDKQRDQSRRARQRSDMSTVSLVGYTNAGKSTLFNGLTTSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
            D     L+L    V ++DT G             K T  E   ADL+L + +   +K  
Sbjct: 232 LDPTLRKLELPDGDVILADTVGFIRHLPHDLVAAFKATLQETRQADLLLHVVDSADEKMA 291

Query: 315 S------------FPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEE 353
                           +I  + +  K DL        D+          +S+   +GLE 
Sbjct: 292 DNFEQVQKVLKEIDAIDIPQLIVCNKIDLLDEVKPRIDYDDEGTPIRVWVSAQQQKGLEL 351

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRH 379
           + + I  ++    ++L   IP+   H
Sbjct: 352 VEDAINQLVGKAIQELTLQIPASAGH 377


>gi|25028389|ref|NP_738443.1| putative GTP-binding protein HflX [Corynebacterium efficiens
           YS-314]
 gi|259507446|ref|ZP_05750346.1| GTP-binding protein [Corynebacterium efficiens YS-314]
 gi|23493674|dbj|BAC18643.1| putative GTP-binding protein HflX [Corynebacterium efficiens
           YS-314]
 gi|259164934|gb|EEW49488.1| GTP-binding protein [Corynebacterium efficiens YS-314]
          Length = 535

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 117/313 (37%), Gaps = 46/313 (14%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQW-----IDKLTHIRSFIEADLDFSEEEDVQNFSS 189
            +++     ++++  M   L +    W             S     L    E  ++    
Sbjct: 204 HAKSREGKAQVALAQME-YLITRVRGWGGNLSRQAGGRAGSNGGVGLRGPGETKIE-ADR 261

Query: 190 KEVLNDILFLKNDISSH-----ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           + + +D+  L+ ++S       I + +  E +    +I I G++NAGKSSL NA+    V
Sbjct: 262 RRLRSDMARLRRELSGMDTARGIKRSQRSESL--VPQIAIAGYTNAGKSSLINAMTGAGV 319

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D  T   +L +G  V  +DT G          E  K T  EV  ADL+L
Sbjct: 320 -LVEDALFATLDPTTRKAELADGRHVVFTDTVGFIRHLPTSLVEAFKSTLEEVLEADLML 378

Query: 304 LLKEINSKKEISFPKN----------------IDFIFIGTKSDLYSTYT-------EEYD 340
            + + +    +   +                    I +  K D     T        +  
Sbjct: 379 HVVDGSDPFPLKQIEAVNSVISDIIRTTGETPPPEIIVVNKIDQADPLTLAELRHALDDV 438

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS------HKRHLYHLSQTVRYLEMAS 394
             +S+ TGEG++EL  +I+  L+++  +L   IP        + H Y    +  Y    +
Sbjct: 439 VFVSALTGEGIKELEARIELFLNSRDTRLTVLIPFTRGDIVSRIHQYGTVLSEEYSADGT 498

Query: 395 LNEKDCGLDIIAE 407
           L E      + AE
Sbjct: 499 LMEVRIPAQLAAE 511


>gi|304439782|ref|ZP_07399680.1| GTP-binding protein Era [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371769|gb|EFM25377.1| GTP-binding protein Era [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 293

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 83/199 (41%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L    +  V+D   TTR+ + +    +   +   DT G++   
Sbjct: 7   VAVIGRPNVGKSTLLNRLIGMRILAVSDKAQTTRNKINLIYSDDDSQIIFLDTPGMQTPR 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---------KKEISFPKNIDFIFIGTKSD-- 330
           + +    ++ +   +E+ DLI  + + +           +++   K+   I +  K D  
Sbjct: 67  NELGDYMLRESSSALEDVDLITYIVDTSKIIGKQDRAILEKLKKIKDKKVILLINKIDSI 126

Query: 331 -------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  L   Y++E D      IS+  G+G E  ++ +K  L    K       + +  
Sbjct: 127 PKEDILRLIEMYSKEMDFLDVIPISAREGDGTEIYLDTVKKNLPEGPKYYTDEYVTDRPM 186

Query: 380 LYHLSQTVRYLEMASLNEK 398
            + +++ +R   +  L E+
Sbjct: 187 KFIVAEIIREKALRFLQEE 205


>gi|302560729|ref|ZP_07313071.1| GTP-binding protein Era [Streptomyces griseoflavus Tu4000]
 gi|302478347|gb|EFL41440.1| GTP-binding protein Era [Streptomyces griseoflavus Tu4000]
          Length = 320

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 9/135 (6%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           S  +  E +        +G  NAGKS+L NAL  + VAI ++ P TTR  +   +  E  
Sbjct: 10  SSEQPAEAVHRAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHREDA 69

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPK 318
            + + DT G+ +   ++ +             D I      + K         KE++  K
Sbjct: 70  QLILVDTPGLHKPRTLLGERLNDVVRTTWAEVDAIGFCIPADQKIGPGDRFIAKELAGIK 129

Query: 319 NIDFIFIGTKSDLYS 333
               I I TK+DL  
Sbjct: 130 KTPKIAIVTKTDLVD 144


>gi|163814604|ref|ZP_02205993.1| hypothetical protein COPEUT_00755 [Coprococcus eutactus ATCC 27759]
 gi|158450239|gb|EDP27234.1| hypothetical protein COPEUT_00755 [Coprococcus eutactus ATCC 27759]
          Length = 469

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 26/165 (15%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKSSL NA+  + +A+V+D+ GTT D +   ++L     V I DT G
Sbjct: 33  NRVHIGFFGCRNAGKSSLVNAVTGQSLAVVSDVAGTTTDPVYKSMELLPLGPVVIVDTPG 92

Query: 277 IRETDDIVEKEGIKRTFLEVEN-----------ADLILLLKEINSK-KEISFPKNIDFIF 324
           I +   + E   + +T   +             AD    + + + +  ++   KNI+ I 
Sbjct: 93  IDDAGSLGELR-VAKTRQVLSKVDVAVLVVDATAD----MPQADRELLDLFHEKNINHII 147

Query: 325 IGTKSDLYSTYTEEYD--------HLISSFTGEGLEELINKIKSI 361
              KSD       +            +S+  G G+ EL   I  +
Sbjct: 148 AYNKSDASQELMAKCGLTDETGSSIWVSAEKGYGIHELKELIGKL 192


>gi|168205737|ref|ZP_02631742.1| GTP-binding protein [Clostridium perfringens E str. JGS1987]
 gi|170662809|gb|EDT15492.1| GTP-binding protein [Clostridium perfringens E str. JGS1987]
          Length = 440

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 24/158 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L     V   DTAG  
Sbjct: 13  IHISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFVDTAGFD 72

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---------------KKEISFPK----- 318
           +  +I  K  +++T   V   D+ L+   ++                 KEI +       
Sbjct: 73  DEGEIG-KLRVEKTEEVVGKTDVALITLSLSEILEAIKSNIEFKDMLSKEILWLNKLKKA 131

Query: 319 NIDFIFIGTKSDLYSTYTEE--YDHLISSFTGEGLEEL 354
               I +  K DL      E   D      T E  ++ 
Sbjct: 132 KKPAILVINKCDLVPNNLIESKIDLKDIDKTNESNKDC 169


>gi|23465433|ref|NP_696036.1| GTP-binding protein Era [Bifidobacterium longum NCC2705]
 gi|46191170|ref|ZP_00120253.2| COG1159: GTPase [Bifidobacterium longum DJO10A]
 gi|189439456|ref|YP_001954537.1| GTP-binding protein Era [Bifidobacterium longum DJO10A]
 gi|227545909|ref|ZP_03975958.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|312132864|ref|YP_004000203.1| era [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688983|ref|YP_004208717.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F]
 gi|322690952|ref|YP_004220522.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326083|gb|AAN24672.1| widely conserved GTP-binding protein [Bifidobacterium longum
           NCC2705]
 gi|189427891|gb|ACD98039.1| GTPase [Bifidobacterium longum DJO10A]
 gi|227213543|gb|EEI81392.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|311773833|gb|ADQ03321.1| Era [Bifidobacterium longum subsp. longum BBMN68]
 gi|320455808|dbj|BAJ66430.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460319|dbj|BAJ70939.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F]
          Length = 354

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 6/178 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L NAL  K +AI +  P TTR  +   L  +   + + DT 
Sbjct: 44  YRSGF-VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTP 102

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNIDFIFIGTKSDLY 332
           GI     ++ +         + + D++  L   + +    +      +   F   + D  
Sbjct: 103 GIHRPRTLLGQRLNDVVDESLADVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGT 162

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
             +      +++     G ++LINK+  I  N F      +P       +L++    L
Sbjct: 163 FKWRIPLIAIVTKIDELGRQQLINKLIEI--NDFADFSDIVPVSALKHDNLAEVKNVL 218


>gi|330837425|ref|YP_004412066.1| GTP-binding protein Era-like-protein [Spirochaeta coccoides DSM
           17374]
 gi|329749328|gb|AEC02684.1| GTP-binding protein Era-like-protein [Spirochaeta coccoides DSM
           17374]
          Length = 294

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  +AGKS+L N + +  V+I    P TTR+ +          +  +DT G   +D
Sbjct: 6   VTIIGRPSAGKSTLVNTICEAKVSITARTPQTTRNAIKGIYTDSRGQLVFTDTPGYHTSD 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLY 332
               K         +E++D+IL + + + +           +S       I    K+D+ 
Sbjct: 66  KQFNKRLQDVALSALEDSDIILYVIDASRQPGEEEEAIAGLLSKITKTPVICGINKADIL 125

Query: 333 STYTEE-------------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           +   +E                  S+    G++EL+  + S         P    + +  
Sbjct: 126 TEIQKETATSFLQKQLPASPVLTFSAQEDTGIDELLITLFSHAPESEPLYPEETFTDQPL 185

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAE 407
            + +++ +R  +   L+ ++    I  E
Sbjct: 186 EFRIAEIIRE-KAIRLSREELPHSIFVE 212


>gi|329890078|ref|ZP_08268421.1| GTP-binding protein Era [Brevundimonas diminuta ATCC 11568]
 gi|328845379|gb|EGF94943.1| GTP-binding protein Era [Brevundimonas diminuta ATCC 11568]
          Length = 321

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 69/178 (38%), Gaps = 35/178 (19%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  NAGKS+L N L    V+IVT    TTR  +          + + DT GI     
Sbjct: 19  AIIGAPNAGKSTLVNRLTGSKVSIVTQKVQTTRFPVRGIAIKGDAQIVLVDTPGIFTPRR 78

Query: 283 IVEKEGIKRTFLEVENADLILLLKEI--------------------NSKKEISFPKNIDF 322
            +++  +   +   ++AD+++ L +                     +++  I+  K  D 
Sbjct: 79  RLDRAMVASAWGGAQDADVVVHLIDAQSHIDAEGREGTAADRRSAEDTETIIANLKATDT 138

Query: 323 IFI--GTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
             I    K D             L+ T       +IS+ +G+G+++L  ++   +   
Sbjct: 139 KVILALNKIDGMRRDTLLALSQRLFETGVYSEVFMISALSGDGVDDLKTRLALAMPEG 196


>gi|126667176|ref|ZP_01738150.1| GTP-binding protein Era [Marinobacter sp. ELB17]
 gi|126628332|gb|EAZ98955.1| GTP-binding protein Era [Marinobacter sp. ELB17]
          Length = 305

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 73/220 (33%), Gaps = 31/220 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  N GKS+L N +  + ++I +  P TTR  +     +        DT G
Sbjct: 13  RCGF-VAIVGRPNVGKSTLMNHILGQKLSITSRKPQTTRHQVLGIKTIGPVQAVYVDTPG 71

Query: 277 IRETD-DIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTK 328
           + E +   + +   K     ++  D+++ + +     +  E+   K        I    K
Sbjct: 72  MHEEEPRAINRYMNKAATSALKGVDVVVFVLDQLAWTTADELVLEKLSSLKCPVILAINK 131

Query: 329 SDLYSTYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            D          H               +S+     L  L   +   L       P    
Sbjct: 132 VDKIEKRETLLPHLDMLSRKRDFAEMIPVSALRETNLVPLEECVGRFLPQSVHFYPDDQI 191

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDI---IAENLRL 411
           + +   +  S+ VR         +  G ++   +A  +  
Sbjct: 192 TDRSERFMASEMVR-----EKITRQLGAELPYSVAVEIEE 226


>gi|11498040|ref|NP_069264.1| GTP1/OBGfamily GTP-binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2650203|gb|AAB90809.1| GTP-binding protein, GTP1/OBG-family [Archaeoglobus fulgidus DSM
           4304]
          Length = 328

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 78/188 (41%), Gaps = 20/188 (10%)

Query: 197 LFLKNDISSHISQGKLGE---IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             + +++              I+++   IV+ G+ N GKSSL   ++      V   P T
Sbjct: 128 EQIDDELRFLNDAKNRMREIPILQDLPTIVVAGYPNVGKSSLVARIS-TVKPEVASYPFT 186

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN-ADLILLLKEINSKK 312
           T+ +     +  G  V+I DT G+ +          +R  L +++ AD+IL + +     
Sbjct: 187 TKKINLGFAEFAGKRVQIIDTPGLLDRPLSKRNRIERRAVLALKHLADIILFVIDPTETC 246

Query: 313 EISFPKN------------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
             S  K                + + +K+D++     +     S+ TGEG++ELI +I+ 
Sbjct: 247 GYSLEKQLSLLEEIKGYFAKPTVEVYSKADMHDRRDRQA---YSAVTGEGIDELIKEIEK 303

Query: 361 ILSNKFKK 368
           ++    + 
Sbjct: 304 MVKIHSQT 311


>gi|50122199|ref|YP_051366.1| GTP-binding protein Era [Pectobacterium atrosepticum SCRI1043]
 gi|49612725|emb|CAG76175.1| GTP-binding protein [Pectobacterium atrosepticum SCRI1043]
          Length = 301

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 74/199 (37%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +LI+ + E    N   ++   K     +  +    K D  +
Sbjct: 71  KRAINRLMNRAASSSMGDVELIIFVVEGTHWNDDDDMVLNKLRDQKLPVLLAINKVDNVT 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T+   H+               S+  G  ++ + + ++  L       P    + +  
Sbjct: 131 DKTKLLPHIQFLSQQMDFLDVVPISAEKGSNVDTIASIVRKHLPQATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 191 RFMASEIIREKLMRFLGEE 209


>gi|224437279|ref|ZP_03658251.1| GTP-binding protein Era [Helicobacter cinaedi CCUG 18818]
          Length = 318

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           K  L     +++ +S    +  +    R+G+ +  LG  NAGKS+L N L  +++A+V+ 
Sbjct: 3   KSCLESYENIESQVSL---ESSVNLPTRSGF-VATLGRPNAGKSTLLNHLLGENLALVSH 58

Query: 250 IPGTTRDVLTIDLDLE--GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
               TR  L I +        +   DT GI   + ++ +  + +    + + DL L L  
Sbjct: 59  KANATRKQLQIIVPYAPLNTQIVFVDTPGIHHQEKLLNQYMLSQALKAMGDCDLALYLAP 118

Query: 308 INSK 311
           I   
Sbjct: 119 ITDD 122


>gi|121634485|ref|YP_974730.1| GTP-binding protein Era [Neisseria meningitidis FAM18]
 gi|313668837|ref|YP_004049121.1| GTPase [Neisseria lactamica ST-640]
 gi|189037658|sp|A1KSV0|ERA_NEIMF RecName: Full=GTPase Era
 gi|120866191|emb|CAM09931.1| putative GTPase [Neisseria meningitidis FAM18]
 gi|313006299|emb|CBN87762.1| putative GTPase [Neisseria lactamica 020-06]
 gi|325133798|gb|EGC56454.1| GTP-binding protein Era [Neisseria meningitidis M13399]
 gi|325137909|gb|EGC60484.1| GTP-binding protein Era [Neisseria meningitidis ES14902]
 gi|325141940|gb|EGC64380.1| GTP-binding protein Era [Neisseria meningitidis 961-5945]
 gi|325197907|gb|ADY93363.1| GTP-binding protein Era [Neisseria meningitidis G2136]
 gi|325202517|gb|ADY97971.1| GTP-binding protein Era [Neisseria meningitidis M01-240149]
 gi|325206469|gb|ADZ01922.1| GTP-binding protein Era [Neisseria meningitidis M04-240196]
 gi|325207733|gb|ADZ03185.1| GTP-binding protein Era [Neisseria meningitidis NZ-05/33]
          Length = 307

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 75/219 (34%), Gaps = 42/219 (19%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           DI + ++  +     R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T  
Sbjct: 2   DIETFLAGERAAGGYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGI 60

Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----------------ENADLILLL 305
              +       DT G +        + + +   E                  +AD ++L 
Sbjct: 61  YTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVL- 119

Query: 306 KEINSKKEISFPKNIDFIFIGTKSD----------------LYSTYTEEYDHLISSFTGE 349
                      PK+   I +  K D                + + +       +S+  G 
Sbjct: 120 --------KQLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGL 171

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            +  L+  +K  L       P  + + K   +   + VR
Sbjct: 172 RIANLLELLKPYLPESVPMYPEDMVTDKSARFLAMEIVR 210


>gi|325924507|ref|ZP_08186026.1| GTP-binding proten HflX [Xanthomonas gardneri ATCC 19865]
 gi|325545002|gb|EGD16337.1| GTP-binding proten HflX [Xanthomonas gardneri ATCC 19865]
          Length = 427

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 92/283 (32%), Gaps = 26/283 (9%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W          I        + +      ++ +  +      +   
Sbjct: 114 LAQLRHMATRLVRGWTHLERQRGGAIGLRGPGETQLETDRRLLQKRVEQLQQRLEKVEVQ 173

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +   +     +I ++G++NAGKS+LFNAL   + A V D    T D     + L G
Sbjct: 174 RTQMRRARMRSELPRIALVGYTNAGKSTLFNALTGAE-AYVADQLFATLDPTVRRIALPG 232

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------- 318
               ++DT G             + T  E  +ADL+L + +          +        
Sbjct: 233 GSAILADTVGFVRDLPHQLVAAFRSTLSEARDADLLLHIVDAADPLREERIRQVDEVLHA 292

Query: 319 ----NIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSI 361
               ++  + +  K D        +D               +S+  G GLEEL + +   
Sbjct: 293 VGAGDLPQLLVFNKIDKIEGAQVRHDAQDGIPDQARRERVWVSARDGRGLEELQHALGQR 352

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           L  +       +P     L      +  +     +E    LD+
Sbjct: 353 LDLRHLTGQLRLPPSAGRLRSKLHQLEVVRNEQSDEDGWLLDV 395


>gi|295109139|emb|CBL23092.1| GTP-binding protein HflX [Ruminococcus obeum A2-162]
          Length = 417

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 104/278 (37%), Gaps = 24/278 (8%)

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           A  +SSE ++Q  L+        ++      + L+ +   I       ++ +      + 
Sbjct: 116 ARAVSSEGKIQVELAQLRYR---AARLVGLRESLSRLGGGIGTRGPGEKKLETDRRLIRT 172

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDI 250
            ++ +      +  H  +   G+  R   K   I+G++NAGKS+L N L    + +  D 
Sbjct: 173 RISALKAELFQVEKH-RELIRGKRSRGNLKTAAIVGYTNAGKSTLLNTLTGAGI-LAEDK 230

Query: 251 PGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D  T  L+L +G  + ++DT G          E  K T  E + AD I+ + + +
Sbjct: 231 LFATLDPTTRVLELKDGQQILLTDTVGFIRKLPHHLVEAFKSTLEEAKYADYIIHVVDAS 290

Query: 310 SKK-EISF-----------PKNIDFIFIGTKSD-----LYSTYTEEYDHLISSFTGEGLE 352
           + + E+                   I +  K D            +Y    S+ +GEGLE
Sbjct: 291 NPQAELQMHTVYETLRELGATGKKIITLLNKQDKVKDVRIRDLQADYTVKCSARSGEGLE 350

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
           EL + +  IL+     L       +     L +    L
Sbjct: 351 ELKDVLAKILAESQIYLEELFSYKEAGKIQLIREYGSL 388


>gi|319407328|emb|CBI80971.1| GTP-binding protein hflX [Bartonella sp. 1-1C]
          Length = 448

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 90/236 (38%), Gaps = 30/236 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + N I+ ++ ++ + +    L    R       I ++G++NAGKS+LFN L+  
Sbjct: 182 EADRRLLQNKIISIRRELETVVKTRALHRAKRKRIPHPVIALVGYTNAGKSTLFNRLSDS 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V     +  T    L   +   G  V +SDT G             + T  EV  ADLI
Sbjct: 242 NVLAEDMLFATLDPTLRKIVLPHGQTVLLSDTVGFISNLPTHLIAAFRATLEEVIEADLI 301

Query: 303 LLLKEINSKKEISFPKN---------------IDFIFIGTKSDLYSTYTEEY-------- 339
           L +++++     +  ++                  + I  K D    +            
Sbjct: 302 LHVRDVSDPDHYAHAQDVFEILSDLGVDINDTDHIVEIWNKIDTLDQHALGVLQTNSKKM 361

Query: 340 ---DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLE 391
                +IS+ TG+GL +L+  I+  +    + +   + P   R +  L +    +E
Sbjct: 362 LNSALMISALTGKGLSQLLALIEKKIFGDIQSVELILKPDEMRIIDWLYKNSGQIE 417


>gi|29832138|ref|NP_826772.1| GTP-binding protein Era [Streptomyces avermitilis MA-4680]
 gi|29609256|dbj|BAC73307.1| putative GTP-binding protein Era/ThdF family [Streptomyces
           avermitilis MA-4680]
          Length = 330

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+    +G  NAGKS+L NAL  + VAI  + P TTR  +   +      + + DT G
Sbjct: 30  RAGF-ACFVGRPNAGKSTLTNALVGQKVAITANQPQTTRHTVRGIVHRPDAQLILVDTPG 88

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++ +             D+I      N K         KE++  K    I I T
Sbjct: 89  LHKPRTLLGERLNDIVRTTWAEVDVIGFCLPANEKLGPGDRFIAKELASIKKTPKIAIVT 148

Query: 328 KSDLYSTYT 336
           K+DL    T
Sbjct: 149 KTDLVDGKT 157


>gi|313115494|ref|ZP_07800959.1| GTP-binding protein HflX [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622204|gb|EFQ05694.1| GTP-binding protein HflX [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 421

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 17/226 (7%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             ++     + +          + ++G++N GKSSL NAL    VA   D+   T D  +
Sbjct: 189 LAEMEKRRGESRKARAKTGMPVVSLVGYTNVGKSSLMNALCGPSVAE-ADMLFATLDPTS 247

Query: 260 IDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP- 317
             L L  G  V + DT G          E  K T  E   +D+I+ + +   ++      
Sbjct: 248 RKLILPSGMAVLLVDTVGFVSRLPHNLVEAFKSTLEEAAWSDVIIRVADAGDEQREEQLA 307

Query: 318 -----------KNIDFIFIGTKSDLYSTYTEEYDH-LISSFTGEGLEELINKIKSILSNK 365
                       +I  + +  K D     + + D  L S+ TG GL+ L+ K+  +LS++
Sbjct: 308 VTDEVLDGLDCADIPRLTVYNKCDKPGAMSFDPDILLTSAKTGYGLDTLLAKLDEVLSDR 367

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD-II-AENL 409
              L   +P  K  L    +    +++    E    L+ I+  E+L
Sbjct: 368 VHTLKVLLPYDKLGLAAPMRERGSVQVEEYREDGLYLEGIVKTEDL 413


>gi|212639341|ref|YP_002315861.1| GTP-binding protein protease modulator [Anoxybacillus flavithermus
           WK1]
 gi|212560821|gb|ACJ33876.1| GTP-binding protein protease modulator [Anoxybacillus flavithermus
           WK1]
          Length = 415

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 18/201 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
           ++I ++G++NAGKS+LFN L   D A+  ++   T D LT  L L  GY   ++DT G  
Sbjct: 196 FQIALVGYTNAGKSTLFNRLTNAD-ALEENLLFATLDPLTRKLVLPSGYTALLTDTVGFI 254

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN------------IDFIFIG 326
           +          + T  EV+ ADLIL + + ++   I   +             I    + 
Sbjct: 255 QDLPTTLVAAFRSTLEEVKEADLILHIVDSSNPDYIQHEQTVYRLLEELEATAIPIATVY 314

Query: 327 TKSD--LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
            K D  L S           +S+F  + ++ L + I+  +    +    +IPS    L  
Sbjct: 315 NKRDIVLPSFVPSPKTDYLLVSAFHEQDVQTLRHFIEQKMIEVMEHYNVAIPSFAGKLLA 374

Query: 383 LSQTVRYLEMASLNEKDCGLD 403
             +    ++    NE+    +
Sbjct: 375 QLKAETIVQHMYFNEQSGMYE 395


>gi|322834126|ref|YP_004214153.1| GTP-binding protein Era [Rahnella sp. Y9602]
 gi|321169327|gb|ADW75026.1| GTP-binding protein Era [Rahnella sp. Y9602]
          Length = 301

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E        E+   K        +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTHWTPDDEMVVNKLRDLKSPVLLAINKIDNVT 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             ++   H               IS+  G  ++ +   ++  L       P    + +  
Sbjct: 131 DKSKLLPHLQFLSEQMNFVDIVPISAEKGTNVDTIAALVRKRLPEAVHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 191 RFMASEIIREKLMRFLGEE 209


>gi|119716151|ref|YP_923116.1| GTP-binding protein Era [Nocardioides sp. JS614]
 gi|226741224|sp|A1SHZ4|ERA_NOCSJ RecName: Full=GTPase Era
 gi|119536812|gb|ABL81429.1| GTP-binding protein Era [Nocardioides sp. JS614]
          Length = 313

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 10/126 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  NAGKS+L NAL    V I +D P TTR V+   +  +   + + DT G
Sbjct: 13  RSGF-VSFVGRPNAGKSTLTNALVGSKVVITSDKPQTTRTVVRGIVHRDDAQLILVDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           +     ++ +         +   D++ +    N K          E++  K    + I T
Sbjct: 72  LHRPRTLLGERLNDLVKTTLAEVDVVAVCLPANEKVGPGDRFIVNEMAKIKRTTKVAIAT 131

Query: 328 KSDLYS 333
           K+DL S
Sbjct: 132 KTDLAS 137


>gi|183508428|ref|ZP_02957974.1| GTP-binding protein Era [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|182675835|gb|EDT87740.1| GTP-binding protein Era [Ureaplasma parvum serovar 14 str. ATCC
           33697]
          Length = 300

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 23/167 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NA+ KK V+I+++ P TTR+ +    + +   +  +DT G  E  
Sbjct: 8   VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGFHEPS 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLK------EINSKKEISFPK---NIDFIFIGTKSDLY 332
           + ++        +  + A++IL +       + N  + I+  K     + I + +K+++ 
Sbjct: 68  NKLDLFLNHEIEISYKEANIILFVTTMDKELDANDFEIINLIKEANKENVILVISKAEMA 127

Query: 333 STYT--EEYDHL------------ISSFTGEGLEELINKIKSILSNK 365
                 +E  H             IS+     +++LI+ IK+ L   
Sbjct: 128 KNQDQIDERIHFLKKHLVFKDVVQISALHAINIDKLISTIKNYLHKD 174


>gi|295838981|ref|ZP_06825914.1| GTP-binding protein Era [Streptomyces sp. SPB74]
 gi|197695534|gb|EDY42467.1| GTP-binding protein Era [Streptomyces sp. SPB74]
          Length = 316

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+    +G  NAGKS+L NAL  + VAI ++ P TTR  +   +      + + DT G
Sbjct: 16  RAGF-ACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEAQLILVDTPG 74

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++ +             D+I      + K         KE++  K    + I T
Sbjct: 75  LHKPRTLLGERLNDVVRATWAEVDVIGFCLPADQKIGPGDRFIAKELAGIKRTPKVAIVT 134

Query: 328 KSDLYST 334
           K+DL  +
Sbjct: 135 KTDLVDS 141


>gi|15669110|ref|NP_247915.1| GTP-binding protein homologue YphC [Methanocaldococcus jannaschii
           DSM 2661]
 gi|3024931|sp|Q58330|Y920_METJA RecName: Full=Uncharacterized protein MJ0920
 gi|1591593|gb|AAB98924.1| GTP-binding protein homologue (yphC) [Methanocaldococcus jannaschii
           DSM 2661]
          Length = 185

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 35/178 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL----------DLEGYLV 269
           +KI I+G  NAGKSS+ NAL  K V++V+++ GTT+  +              + E   +
Sbjct: 6   FKIAIIGPENAGKSSIMNALFGKYVSLVSEVGGTTKMPIKRYWGKLKIGRIKEEPEFVNL 65

Query: 270 KISDTAGIRETDDIVEKEG----IKRTFLEVENADLILLLKEINSKKEISFPK------- 318
              D  G+  T D          +++TF E+ ++D+I+ + + +     SF +       
Sbjct: 66  VFVDLGGLYTTTDKQSPIMTPKVLEKTFEEINDSDMIIHVIDGSVGLLRSFERLHHLLKF 125

Query: 319 --NIDFIFIGTKSDLYSTYTEEY------------DHLISSFTGEGLEELINKIKSIL 362
                 I +  K DL +   +E+               +S+ T EG+ EL++ I   L
Sbjct: 126 RYQKPIIVVINKCDLLNDSDKEHLKNYVERRIKNTPIFVSAKTFEGIPELLDIIIKYL 183


>gi|328948963|ref|YP_004366300.1| GTP-binding protein Era-like-protein [Treponema succinifaciens DSM
           2489]
 gi|328449287|gb|AEB15003.1| GTP-binding protein Era-like-protein [Treponema succinifaciens DSM
           2489]
          Length = 308

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 83/201 (41%), Gaps = 26/201 (12%)

Query: 214 EIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           EI + G K   + I+G  +AGKS+  N  + + ++IV+ +P TTR+ +   ++     + 
Sbjct: 10  EIQKAGPKTALVSIVGRPSAGKSTFLNTASGEKISIVSPVPQTTRNAIRGIINTSLGQLV 69

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKE----ISFPKNIDF 322
             DT G+  ++  +  +        ++ +D IL + +     N ++E    +  P     
Sbjct: 70  FIDTPGLHLSEKKLNLKLSNIAQENIKESDAILYIIDSTRPHNEEEEMIASLLIPHKDKV 129

Query: 323 IFIGTKSD---------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
           +    K++                +  +  E    IS+   + + E++  + S+   +  
Sbjct: 130 VIAINKTEDSKSNALNSRSFIQKTFPDFPSERIIEISAKEDKNINEVLKALFSLAKEEPH 189

Query: 368 KLPFSIPSHKRHLYHLSQTVR 388
             P    + +   + +++ +R
Sbjct: 190 LYPEEFYTDQEVDFRIAEIIR 210


>gi|316941690|gb|ADU75724.1| GTP-binding proten HflX [Clostridium thermocellum DSM 1313]
          Length = 608

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 22/249 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +   +S L G    +L+ +   I       ++ +V     K  ++ +     D+   
Sbjct: 313 LAQLKYRVSRLVG-LGTQLSRLGGGIGTRGPGEKKLEVDRRHIKRRISFLEAQLKDVEKR 371

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-E 265
            +  +          I ++G++NAGKS+L N L + +V +  D    T D  T    L +
Sbjct: 372 RNSFRESRTRNAIPTIALVGYTNAGKSTLMNRLCESNV-LAEDKLFATLDPTTRSFRLSD 430

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------- 318
           G    + DT G          E  K T  E   AD+++ + + ++++     K       
Sbjct: 431 GREALLIDTVGFIRKLPHELVEAFKSTLEEAVYADMLIHVVDASNEEAEEQVKVVNDILE 490

Query: 319 -----NIDFIFIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                N   I    K D       L  +        IS+ TG+G++ ++  I+ +L    
Sbjct: 491 SLGAANKPVIMALNKMDMVKGGLRLAISNPNGRIFEISAVTGQGIDAMLEGIREMLPEDE 550

Query: 367 KKLPFSIPS 375
           K++   IP 
Sbjct: 551 KEVRLFIPY 559


>gi|261207325|ref|ZP_05922012.1| GTP-binding protein [Enterococcus faecium TC 6]
 gi|289566524|ref|ZP_06446947.1| GTP-binding protein HflX [Enterococcus faecium D344SRF]
 gi|294616545|ref|ZP_06696323.1| GTP-binding proten HflX [Enterococcus faecium E1636]
 gi|260078385|gb|EEW66089.1| GTP-binding protein [Enterococcus faecium TC 6]
 gi|289161678|gb|EFD09555.1| GTP-binding protein HflX [Enterococcus faecium D344SRF]
 gi|291590592|gb|EFF22323.1| GTP-binding proten HflX [Enterococcus faecium E1636]
          Length = 409

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 112/284 (39%), Gaps = 21/284 (7%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L  L GQ    L+ +   I        + +      +  +
Sbjct: 109 MRARSKEGKLQVELAQLEYLLPRLVGQ-GKTLSRLGGGIGTRGPGETKLETDRRHIRNKI 167

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             +     ++ +H  + +        ++I ++G++NAGKS++ N L + D     D    
Sbjct: 168 FAVKKELKEVEAHRERNRQKRKNSEIFQIGLIGYTNAGKSTILNLLTQAD-TYSKDQLFA 226

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D LT      EG+ + ++DT G  +       +    T  E +N DL+L + + +S  
Sbjct: 227 TLDPLTKRWRFAEGFEITVTDTVGFIQDLPTQLIDAFHSTLEESQNMDLLLHVVDASSPD 286

Query: 313 EISFP------------KNIDFIFIGTKSDLYS----TYTEEYDHLISSFTGEGLEELIN 356
            I               K +  + +  K+D       T T   + LIS+ T EG   LI 
Sbjct: 287 RILQEQTVLKLMDELNMKEMSILTVYNKADQIDPAMFTPTLFPNVLISTQTKEGKMALIE 346

Query: 357 KIKSILSNKFKKLPFSIPSHKRH-LYHLSQTVRYLEMASLNEKD 399
            IK  L         S+PS++   L  L +    L+ A + E +
Sbjct: 347 AIKRQLMELMTPYTLSVPSNEGQKLSELRRQTMVLDEAYMEETN 390


>gi|281411746|ref|YP_003345825.1| GTP-binding proten HflX [Thermotoga naphthophila RKU-10]
 gi|281372849|gb|ADA66411.1| GTP-binding proten HflX [Thermotoga naphthophila RKU-10]
          Length = 406

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 22/249 (8%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
           ++L+ +   I          +V     K  +  +     +I    +  +   + +    +
Sbjct: 130 EELSRLGGGIGTRGPGEPLLEVLRRHIKNRIAQLRKRLKEIEQERNTQRKQRLEKKIPHV 189

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            I+G++NAGKS+L   L   DV  V D    T + +T  L L+ G +V +SDT G     
Sbjct: 190 SIVGYTNAGKSTLLKVLTDSDV-YVADKLFATLEPVTRRLKLKSGRVVLVSDTVGFIRKL 248

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTKS 329
                   K T  E++ +D+++ L + +               E      I  I +  K 
Sbjct: 249 PHTIVSAFKATLEEIKYSDVLIHLVDASDPYLEEKMKASEKVLEEIGADKIPRILVFNKI 308

Query: 330 DLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR-HLY 381
           DL      E           IS+    GL++L++ ++ I+  K  +    +P  K   +Y
Sbjct: 309 DLCPRERIETLKWKYPEALFISAEKRIGLDQLLDTLEEIMGQKDIQETLKVPLEKIGQIY 368

Query: 382 HLSQTVRYL 390
            L   +  L
Sbjct: 369 ALKDRLEIL 377


>gi|29829012|ref|NP_823646.1| ATP/GTP-binding protein [Streptomyces avermitilis MA-4680]
 gi|29606118|dbj|BAC70181.1| putative ATP/GTP-binding protein [Streptomyces avermitilis MA-4680]
          Length = 497

 Score = 76.1 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 103/276 (37%), Gaps = 26/276 (9%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS--EEEDVQNFSSKEV 192
            +++     ++++  M   +      W   L+      +     +    E       + +
Sbjct: 186 HAKSREGKAQVALAQMQ-YMLPRLRGWGQSLSRQMGGGKGGGLATRGPGETKIETDRRRI 244

Query: 193 LNDILFLKNDISSHI--SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTD 249
              +  ++ +I+      + K  E  RN    + I G++NAGKSSL N L    V +   
Sbjct: 245 REKMAKMRREIADMKTGREIKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENA 304

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  T    +       G L  ++DT G          E  + T  EV ++DLIL + + +
Sbjct: 305 LFATLDPTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGS 364

Query: 310 S---KKEISFPK---------NIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGEG 350
               +++++  +          +  I +  K+D             E+    +S+ TG+G
Sbjct: 365 HPVPEEQLAAVREVIRDVGATGVPEIVVINKADAADPLVLQRLMRNEKRSIAVSARTGQG 424

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           + EL+  I + L     ++   +P     L   + T
Sbjct: 425 IAELLALIDNELPRPSVEIEALVPYTHGKLVARAHT 460


>gi|289662674|ref|ZP_06484255.1| GTP-binding protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669638|ref|ZP_06490713.1| GTP-binding protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 439

 Score = 76.1 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 97/288 (33%), Gaps = 29/288 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W          I        + +      ++ +  +      +   
Sbjct: 126 LAQLRHMATRLVRGWTHLERQRGGSIGLRGPGETQLETDRRLLQKRVEQLQQRLEKVEVQ 185

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +   +     +I ++G++NAGKS+LFNAL   + A V D    T D     + L G
Sbjct: 186 RTQMRRARMRSELPRIALVGYTNAGKSTLFNALTGAE-AYVADQLFATLDPTVRRIALPG 244

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEI 314
               ++DT G             + T  E  +ADL+L + +            ++   + 
Sbjct: 245 GSAILADTVGFVRDLPHELVAAFRSTLSEARDADLLLHIVDAADPLREERILQVDEVLQA 304

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSI 361
               ++  + +  K D        +D               +S+  G GLEEL + +   
Sbjct: 305 VGAGDLPQLLVFNKIDKIEGAEVRHDAQDGIPDPARRERVWVSARDGRGLEELQHALGQR 364

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           L  +       +P        L   +  LE+    + D    ++  +L
Sbjct: 365 LDLRHLTGQLRLPP---SAGRLRSRLHQLEVVRNEQSDEDGWLLEVDL 409


>gi|311741366|ref|ZP_07715190.1| GTP-binding protein Era [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311303536|gb|EFQ79615.1| GTP-binding protein Era [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 345

 Score = 76.1 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 76/212 (35%), Gaps = 28/212 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  E   V + D
Sbjct: 45  EGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHTIRGLVHREDAQVIVVD 103

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFI 323
           T G+     ++ +   +       + D+I L    + K             S       I
Sbjct: 104 TPGLHRPRTLLGERLNEVVKDTYADVDVIGLTIPADEKIGPGDRWILENVRSIAPKTPII 163

Query: 324 FIGTKSD-----------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            I TK D                 L           +SS  G  L+EL+  I   L    
Sbjct: 164 GIVTKLDKASKDQVGAQLLALHELLTQEDPNAVVIPVSSKEGVQLDELVQVIVDHLPEGP 223

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           K  P    + +     + + +R   ++ L  +
Sbjct: 224 KFYPDDHITDEGQEKRIEELIREAALSGLKAE 255


>gi|193213385|ref|YP_001999338.1| GTP-binding protein Era [Chlorobaculum parvum NCIB 8327]
 gi|193086862|gb|ACF12138.1| GTP-binding protein Era [Chlorobaculum parvum NCIB 8327]
          Length = 305

 Score = 76.1 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 13/129 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
               +G  NAGKS+L N L    ++IVT  P TTR  +T     +   + I DT GI + 
Sbjct: 10  HATFVGAPNAGKSTLLNRLLDHKLSIVTPKPQTTRKKITGIYHDDRSQIIILDTPGIMDP 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE-------------ISFPKNIDFIFIGT 327
              + +  ++ T   + + D+I+ L  +   +E                P +  F+    
Sbjct: 70  KQSLHESMLEITRRSLRDTDVIVALIPLQKGEEPFDRAFADELIEQWVRPADKPFVIALN 129

Query: 328 KSDLYSTYT 336
           K+DL    T
Sbjct: 130 KADLVPEET 138


>gi|318061175|ref|ZP_07979896.1| GTPase Era [Streptomyces sp. SA3_actG]
 gi|318081602|ref|ZP_07988917.1| GTPase Era [Streptomyces sp. SA3_actF]
          Length = 313

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+    +G  NAGKS+L NAL  + VAI ++ P TTR  +   +      + + DT G
Sbjct: 13  RAGF-ACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEAQLILVDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++ +             D+I      + K         KE++  K    + I T
Sbjct: 72  LHKPRTLLGERLNDVVRATWAEVDVIGFCLPADQKIGPGDRFIAKELAGIKRTPKVAIVT 131

Query: 328 KSDLYST 334
           K+DL  +
Sbjct: 132 KTDLVDS 138


>gi|281419096|ref|ZP_06250113.1| GTP-binding proten HflX [Clostridium thermocellum JW20]
 gi|281407245|gb|EFB37506.1| GTP-binding proten HflX [Clostridium thermocellum JW20]
          Length = 608

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 22/249 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +   +S L G    +L+ +   I       ++ +V     K  ++ +     D+   
Sbjct: 313 LAQLKYRVSRLVG-LGTQLSRLGGGIGTRGPGEKKLEVDRRHIKRRISFLEAQLKDVEKR 371

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-E 265
            +  +          I ++G++NAGKS+L N L + +V +  D    T D  T    L +
Sbjct: 372 RNSFRESRTRNAIPTIALVGYTNAGKSTLMNRLCESNV-LAEDKLFATLDPTTRSFRLSD 430

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------- 318
           G    + DT G          E  K T  E   AD+++ + + ++++     K       
Sbjct: 431 GREALLIDTVGFIRKLPHELVEAFKSTLEEAVYADMLIHVVDASNEEAEEQVKVVNDILE 490

Query: 319 -----NIDFIFIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                N   I    K D       L  +        IS+ TG+G++ ++  I+ +L    
Sbjct: 491 SLGAANKPVIMALNKMDMVKGGLRLAISNPNGRIFEISAVTGQGIDAMLEGIREMLPEDE 550

Query: 367 KKLPFSIPS 375
           K++   IP 
Sbjct: 551 KEVRLFIPY 559


>gi|57239269|ref|YP_180405.1| GTP-binding protein Era [Ehrlichia ruminantium str. Welgevonden]
 gi|58579232|ref|YP_197444.1| GTP-binding protein Era [Ehrlichia ruminantium str. Welgevonden]
 gi|81819234|sp|Q5HAY9|ERA_EHRRW RecName: Full=GTPase Era
 gi|57161348|emb|CAH58271.1| putative GTP-binding protein ERA [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417858|emb|CAI27062.1| GTP-binding protein Era homolog [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 296

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 21/157 (13%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G +NAGKS+L N L  + VA VT    TTR  +    + E   +   DT GI     
Sbjct: 12  AIVGATNAGKSTLVNVLVGQKVAAVTPKVQTTRVRMHAVSNHENVQLIFIDTPGIFSPKT 71

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSDL--- 331
            +EK  +K  ++ ++  + +++L ++ +      KK I   K  N++ I +  K D+   
Sbjct: 72  KLEKFLVKHAWMSLKGIENVIVLVDVKNYLNQHLKKIIDRIKHSNLNAILVLNKIDIVHQ 131

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKI 358
                     YS Y       IS+  G G+++L++ +
Sbjct: 132 SIVSEVIEYMYSLYKFSKAFTISALYGIGIDKLVDYL 168


>gi|21224141|ref|NP_629920.1| hypothetical protein SCO5796 [Streptomyces coelicolor A3(2)]
 gi|2995304|emb|CAA18333.1| conserved hypothetical protein SC4H2.17 [Streptomyces coelicolor
           A3(2)]
          Length = 497

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 105/266 (39%), Gaps = 28/266 (10%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS--EEEDVQNFSSKEV 192
            +++     ++++  M   +      W   L+      +     +    E       + +
Sbjct: 186 HAKSREGKAQVALAQMQ-YMLPRLRGWGQSLSRQMGGGKGGGLATRGPGETKIETDRRRI 244

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTD 249
              +  ++ +I+   +  ++    R  +K+    I G++NAGKSSL N L    V +V +
Sbjct: 245 REKMAKMRREIAEMKTGREIKRQERKRHKVPSVAIAGYTNAGKSSLLNRLTGAGV-LVEN 303

Query: 250 IPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D      +   G L  ++DT G          E  + T  EV ++DLIL + + 
Sbjct: 304 ALFATLDPTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDG 363

Query: 309 NS---KKEISFPK---------NIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGE 349
           +    +++++  +         ++  I +  K+D+            E+    +S+ TG+
Sbjct: 364 SHPVPEEQLAAVREVIRDVGATDVPEIVVINKADMADPLVLQRLLRIEKRAIAVSARTGQ 423

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
            +++L+  I + L     ++   +P 
Sbjct: 424 NIDQLLALIDNELPRPSVEIEALVPY 449


>gi|300858946|ref|YP_003783929.1| putative GTP-binding protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300686400|gb|ADK29322.1| putative GTP-binding protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206647|gb|ADL10989.1| GTP-binding protein era-like protein [Corynebacterium
           pseudotuberculosis C231]
 gi|302331196|gb|ADL21390.1| GTP-binding protein era-like protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276890|gb|ADO26789.1| GTP-binding protein era-like protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 305

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 90/245 (36%), Gaps = 34/245 (13%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  E  R+G+ I  +G  N GKS+L NAL  + +AI  + P TTR  +   +      + 
Sbjct: 5   ETPEGFRSGF-ISFVGRPNTGKSTLTNALVGEKIAITANQPETTRHPIRGIVHRPDAQII 63

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNI 320
           + DT G+     ++ +   +       + DLI L    + K                   
Sbjct: 64  VVDTPGLHRPRTLLGERLNEVVKDTYADMDLIGLTIPADEKIGPGDRWILDAVKKVAPKT 123

Query: 321 DFIFIGTKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
             + I TK+D  S                 E     +S+ TGE  + L++ I  +L    
Sbjct: 124 PILGIVTKADKVSRDQVAVQLMALHELLGGESEVVPVSAVTGEQRDVLLDVITGLLPEGP 183

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
           K  P    +       +++ +R   +A L ++      +  +         +I    + E
Sbjct: 184 KFYPDDHVTDDDTETRIAELIREAALAGLKDELPHSVAVQID---------EILPNDERE 234

Query: 427 QLLDI 431
            +LD+
Sbjct: 235 DVLDV 239


>gi|315231324|ref|YP_004071760.1| GTP-binding HflX-like protein [Thermococcus barophilus MP]
 gi|315184352|gb|ADT84537.1| GTP-binding HflX-like protein [Thermococcus barophilus MP]
          Length = 428

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 33/223 (14%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL---GHSNAGKSSLFNALAKKDVAI 246
           K +   +  ++ ++       ++    R     +I+   G++NAGKS+L NALA++++  
Sbjct: 153 KHIRYRMGKIRKELERIREDREVKRKRREEVGFIIVALAGYTNAGKSTLLNALAREEI-P 211

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             D   TT D  T    +    V ++DT G  +       E    T  E+  AD+ILL+ 
Sbjct: 212 AKDQMFTTLDTTTRRFKVNQKRVLVTDTVGFIDDLPPFIVEAFHSTLEEITKADIILLVL 271

Query: 307 EINSK-KEISF-------------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           +++    EI                 +   I +  K DL               T   +E
Sbjct: 272 DVSEPWSEIKRKFLASLKILRELKALDKPIIVVLNKQDLT--------------TNVDVE 317

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
           +    IK  L++K   + F + S    L  L +  R LE A L
Sbjct: 318 DKKGAIKE-LADKRGVVIFDVVSISAKLNRLEELYRALERAIL 359


>gi|323359833|ref|YP_004226229.1| GTPase [Microbacterium testaceum StLB037]
 gi|323276204|dbj|BAJ76349.1| GTPase [Microbacterium testaceum StLB037]
          Length = 297

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 83/200 (41%), Gaps = 26/200 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + VAI +D P TTR  +   ++  G  + + DT G
Sbjct: 5   RSGF-VTFVGRPNVGKSTLTNALVGEKVAITSDKPQTTRRAIRGIVNRPGGQLVVVDTPG 63

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEIS-----FPKNIDFIFIG 326
           I     ++ +         + + D+I        K     + I+     +P+      + 
Sbjct: 64  IHRPRTLLGQRLNDLVEQVLGDVDVIAFCAPATEKVGPGDRRIAESLSGYPRAKKVALV- 122

Query: 327 TKSDL------------YSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK+D               +  E++     +S+ T + L+ L +++ +++          
Sbjct: 123 TKTDAATRDQITERLVEVDSLREDWAAVIPLSAVTNDQLDVLSDELLALMPEGPALYDAD 182

Query: 373 IPSHKRHLYHLSQTVRYLEM 392
           I + +     +++ +R   +
Sbjct: 183 ITTDETLEDRIAEIIREAAL 202


>gi|257068878|ref|YP_003155133.1| GTP-binding protein Era [Brachybacterium faecium DSM 4810]
 gi|256559696|gb|ACU85543.1| GTP-binding protein Era [Brachybacterium faecium DSM 4810]
          Length = 313

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 27/205 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ + ++G  N GKS+L NAL  + VAI +  P TTR  +   +  +   + + D
Sbjct: 4   ETHRSGF-VALVGRPNVGKSTLTNALVGEKVAITSTKPQTTRRAIRGIVTRDEAQIILVD 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNI 320
           T G+     ++ +         +   D++      + K             +  S  +  
Sbjct: 63  TPGVHRPRTLLGERLNDLVRETLGEVDVVGFCLPADQKIGPGDRFVAEDLAEMRSGRRGP 122

Query: 321 DFIFIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
             I I TK DL                   +    IS+  GE ++ L+  I   L    +
Sbjct: 123 KVIAIVTKIDLVGRDVLAEHLMSVDQLMGFDEIVPISAKKGEQIDVLLEVISRHLPEGPQ 182

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEM 392
             P    + +     +S+ +R   +
Sbjct: 183 LYPEDQLTEETRDDRISELIREAAL 207


>gi|281412764|ref|YP_003346843.1| ribosome biogenesis GTP-binding protein YsxC [Thermotoga
           naphthophila RKU-10]
 gi|281373867|gb|ADA67429.1| ribosome biogenesis GTP-binding protein YsxC [Thermotoga
           naphthophila RKU-10]
          Length = 195

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 26/170 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRE 279
           +  +G SN GKSSL NAL  K +A V+  PG TR +    ++ + Y V +     A + +
Sbjct: 26  VAFVGRSNVGKSSLLNALFNKKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSK 85

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDL 331
            + ++ K  ++  F    +  ++ LL +     +      + + K  NI F  + TK D 
Sbjct: 86  KERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDK 145

Query: 332 ----------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                           +S Y E      SS TGEG+ EL++ I ++L   
Sbjct: 146 VKMSERAKKLEEHQKEFSRYGEYTIIPTSSVTGEGISELLDLISTLLKEN 195


>gi|259090123|pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Gdp Form I
 gi|259090124|pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Gdp Form I
          Length = 258

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 19/159 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ + G  N GK+SLFNAL       V + PG T +        +GY + + D  G   
Sbjct: 6   VKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------------ISFPKNIDFI 323
                  E I R +L   +ADL++L+ +  + ++                ++     +  
Sbjct: 65  LGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEXEKKVILAXTAIDEAK 124

Query: 324 FIGTKSDLYS--TYTEEYDHLISSFTGEGLEELINKIKS 360
             G K D Y    +        SS TGEGLEEL  KI  
Sbjct: 125 KTGXKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVE 163


>gi|255323739|ref|ZP_05364867.1| GTP-binding protein Era [Corynebacterium tuberculostearicum SK141]
 gi|255299229|gb|EET78518.1| GTP-binding protein Era [Corynebacterium tuberculostearicum SK141]
          Length = 345

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 76/212 (35%), Gaps = 28/212 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  +   V + D
Sbjct: 45  EGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHTIRGLVHRDDAQVIVVD 103

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFI 323
           T G+     ++ +   +       + D+I L    + K             S       I
Sbjct: 104 TPGLHRPRTLLGERLNEVVKDTYADVDVIGLTIPADEKIGPGDRWILENVRSIAPKTPII 163

Query: 324 FIGTKSD-----------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            I TK D                 L           +SS  G  L+EL+  I   L    
Sbjct: 164 GIVTKLDKASKDQVGAQLLALHELLSQDDPNAVVIPVSSKEGVQLDELVQVIVDHLPEGP 223

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           K  P    + +     + + +R   ++ L  +
Sbjct: 224 KFYPDDHITDEGQEKRIEELIREAALSGLKAE 255


>gi|145595961|ref|YP_001160258.1| GTP-binding protein Era [Salinispora tropica CNB-440]
 gi|145305298|gb|ABP55880.1| GTP-binding protein Era [Salinispora tropica CNB-440]
          Length = 299

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 85/223 (38%), Gaps = 25/223 (11%)

Query: 212 LGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
             E +R  Y+      +G  NAGKS+L NA+  + +AI +  P TTR V+   L      
Sbjct: 2   TSENLRQPYRAGFGCFVGRPNAGKSTLTNAIVGQKIAITSSKPQTTRHVIRAVLHRPDSQ 61

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNI 320
           + + DT G+     ++ +             D+I L    +                 N 
Sbjct: 62  LVLVDTPGLHRPRTLLGERLNDLVRQTWSEVDVIGLCVPADEPIGRGDRFISGELAELNA 121

Query: 321 DFIFIGTKSDLYS---------TYTEEYDH----LISSFTGEGLEELINKIKSILSNKFK 367
             + + TK+DL             +E  D      +S+ +G  ++ L++ +   L    +
Sbjct: 122 TVLAVVTKTDLVDREQLAKQLVAVSELADFAEVVPVSAVSGHQVDTLVDVMTRYLPESPQ 181

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL 409
             P  + + +     +++ +R   +  + +E    + ++ E +
Sbjct: 182 LYPDDMLTEEPEQVLVAELIREAALEGVRDELPHSIAVVVEEM 224


>gi|159466536|ref|XP_001691465.1| iron hydrogenase assembly protein [Chlamydomonas reinhardtii]
 gi|46403155|gb|AAS92601.1| Fe-hydrogenase assembly protein [Chlamydomonas reinhardtii]
 gi|158279437|gb|EDP05198.1| iron hydrogenase assembly protein [Chlamydomonas reinhardtii]
          Length = 1151

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 2/92 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  NAGKS+L NALA+++  IV   PGTT DV T+ L+L      K+ DTAG+ 
Sbjct: 676 INIGVFGVMNAGKSTLVNALAQQEACIVDSTPGTTADVKTVLLELHALGPAKLLDTAGLD 735

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           E   + +K+  ++    ++  D+ +L+ + ++
Sbjct: 736 EVGGLGDKK-RRKALNTLKECDVAVLVVDTDT 766


>gi|256784779|ref|ZP_05523210.1| hypothetical protein SlivT_09833 [Streptomyces lividans TK24]
 gi|289768666|ref|ZP_06528044.1| ATP/GTP-binding protein [Streptomyces lividans TK24]
 gi|289698865|gb|EFD66294.1| ATP/GTP-binding protein [Streptomyces lividans TK24]
          Length = 497

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 105/266 (39%), Gaps = 28/266 (10%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS--EEEDVQNFSSKEV 192
            +++     ++++  M   +      W   L+      +     +    E       + +
Sbjct: 186 HAKSREGKAQVALAQMQ-YMLPRLRGWGQSLSRQMGGGKGGGLATRGPGETKIETDRRRI 244

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTD 249
              +  ++ +I+   +  ++    R  +K+    I G++NAGKSSL N L    V +V +
Sbjct: 245 REKMAKMRREIAEMKTGREIKRQERKRHKVPSVAIAGYTNAGKSSLLNRLTGAGV-LVEN 303

Query: 250 IPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D      +   G L  ++DT G          E  + T  EV ++DLIL + + 
Sbjct: 304 ALFATLDPTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDG 363

Query: 309 NS---KKEISFPK---------NIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGE 349
           +    +++++  +         ++  I +  K+D+            E+    +S+ TG+
Sbjct: 364 SHPVPEEQLAAVREVIRDVGATDVPEIVVINKADMADPLVLQRLLRIEKRAIAVSARTGQ 423

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
            +++L+  I + L     ++   +P 
Sbjct: 424 NIDQLLALIDNELPRPSVEIEALVPY 449


>gi|254421034|ref|ZP_05034758.1| GTP-binding proten HflX [Brevundimonas sp. BAL3]
 gi|196187211|gb|EDX82187.1| GTP-binding proten HflX [Brevundimonas sp. BAL3]
          Length = 437

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 33/215 (15%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSSLFNALAKK 242
               + + + I+ LK ++        L    R       I ++G++NAGKS+LFN L   
Sbjct: 169 ELDRRLIADRIVRLKAELEEVRRTRGLHRKQRQKVPFPTIALVGYTNAGKSTLFNRLTGS 228

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V    D+   T D     + L  G    ++DT G          E  + T  EV  ADL
Sbjct: 229 EV-FAKDLLFATLDTTQRTIRLPQGRPAIVADTVGFISDLPHELVESFRATLEEVGEADL 287

Query: 302 ILLLKEINSKKEISFPKNIDFIF---------------IGTKSDLYSTYTEEYDHLI--- 343
           IL +++I S    +  K+++ +                +  K DL      E        
Sbjct: 288 ILHVRDIASADSDAQAKDVETVLKQIETPEGKTRRVLEVWNKIDLLDDEAREAVLGQAER 347

Query: 344 ----------SSFTGEGLEELINKIKSILSNKFKK 368
                     S++TGEG+E L   I  ++ +  + 
Sbjct: 348 LAKTGEAVAVSAWTGEGIEPLRQTIAGLIDDDPET 382


>gi|126173440|ref|YP_001049589.1| GTP-binding protein Era [Shewanella baltica OS155]
 gi|160874398|ref|YP_001553714.1| GTP-binding protein Era [Shewanella baltica OS195]
 gi|125996645|gb|ABN60720.1| GTP-binding protein Era [Shewanella baltica OS155]
 gi|160859920|gb|ABX48454.1| GTP-binding protein Era [Shewanella baltica OS195]
 gi|315266633|gb|ADT93486.1| GTP-binding protein Era [Shewanella baltica OS678]
          Length = 338

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 28/215 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + V+I +  P TTR  +          +   DT G+   +
Sbjct: 47  VAIIGRPNVGKSTLINRLLGQKVSITSKKPQTTRHRIMGIHTDGPKQIVFIDTPGLHIEE 106

Query: 282 DIVEKEGIKRTFLEVENADL--ILLLKEI---NSKKEISFPK------NIDFIFIGTKSD 330
                  + R       AD+  ++ + +     +  E+   K          I    K D
Sbjct: 107 QRAINRLMNRA-AASSLADVAMVIFVVDGMTWTADDEMVLSKLRRGGEERQTILAINKVD 165

Query: 331 --------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                         +   Y  +    IS+  G  ++ ++    + +       P    + 
Sbjct: 166 NIKDKESLFPYLEEVAKKYPFDEILPISASKGTNVQRILELAAASIPEGPFFFPEDYVTD 225

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +   +  S+ VR   M  L + +   D     +  
Sbjct: 226 RSQRFMASEIVREKLMRFLGD-ELPYD-ATVEIEQ 258


>gi|320008150|gb|ADW03000.1| GTP-binding proten HflX [Streptomyces flavogriseus ATCC 33331]
          Length = 503

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 96/261 (36%), Gaps = 19/261 (7%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q +  +  + G   SL  Q     +     +        + +      +E +  +  
Sbjct: 201 SLAQMQYMLPRLRGWGQSLSRQMGGGGSSGGGGMATRGPGETKIETDRRRIREKMAKMRR 260

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
              ++ +     +          + I G++NAGKSSL N L    V +   +  T    +
Sbjct: 261 EIAEMKTGREIKRQERKRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 320

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEI 314
                  G L  ++DT G          E  + T  EV ++DLIL + +    +  ++  
Sbjct: 321 RRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGAHPVPEEQLA 380

Query: 315 SFPK--------NIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGEGLEELINKIK 359
           +  +        ++  I +  K+D            TE++   +S+ TG G++EL+  I 
Sbjct: 381 AVRQVIREVGAVDVPEIVVINKADAADPLVLQRLLRTEKHAIAVSARTGAGIDELLALID 440

Query: 360 SILSNKFKKLPFSIPSHKRHL 380
           + L     ++   +P  +  L
Sbjct: 441 AELPRPSVEIEALVPYTQGAL 461


>gi|197117975|ref|YP_002138402.1| ferrous iron transport protein B [Geobacter bemidjiensis Bem]
 gi|197087335|gb|ACH38606.1| ferrous iron transport protein B [Geobacter bemidjiensis Bem]
          Length = 663

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GKS LFNAL    V  V++ PGT+ +V      + G   +I DT G+   
Sbjct: 23  KVALVGNPNVGKSVLFNALTGAYVT-VSNYPGTSVEVSRGSTAINGEEFEIIDTPGMYSI 81

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYST 334
             I E+E + R  L  E   L+L + +  + + +           +  + +    D  + 
Sbjct: 82  LPITEEERVAREILLTERPHLVLHVLDARNLERMLPMTLQLIEAELPVVLVVNIMDEAAR 141

Query: 335 YTEEYDH 341
              E D 
Sbjct: 142 MGLEIDI 148


>gi|159899445|ref|YP_001545692.1| GTP1/OBG protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892484|gb|ABX05564.1| GTP1/OBG protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 444

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 84/234 (35%), Gaps = 30/234 (12%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
                D+  H    +          I ++G++NAGKS+L N LA+ DV +  D+   T D
Sbjct: 195 KEQLADVHRHRELYRQNRQESGLPIISVVGYTNAGKSTLLNRLAQADV-LAADMLFATLD 253

Query: 257 VLTIDLDLEGYLVKI-SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-------- 307
             T  + L G    + +DT G  +          + T  E+  AD++L + +        
Sbjct: 254 PTTRKVALPGGRAVLMTDTVGFIQRLPTALVAAFRATLEEIAEADVLLHVLDLTHANVEE 313

Query: 308 -----INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--------------SSFTG 348
                I++  E+   ++   + +  K D   + ++     +              S+   
Sbjct: 314 QFKTVIDTLSELKV-QDKPILTVFNKIDKIDSPSDAEIVRMITELGLPIDRWVAISAQQN 372

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
            G++ L   I+ +L  +  K    IP     L  L      +E      +   L
Sbjct: 373 IGIDRLQTAIEQMLMERMVKFEVMIPYRANELVALWHERGMIESEEFGAEGTTL 426


>gi|333027190|ref|ZP_08455254.1| putative GTP-binding protein Era [Streptomyces sp. Tu6071]
 gi|332747042|gb|EGJ77483.1| putative GTP-binding protein Era [Streptomyces sp. Tu6071]
          Length = 316

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+    +G  NAGKS+L NAL  + VAI ++ P TTR  +   +      + + DT G
Sbjct: 16  RAGF-ACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEAQLILVDTPG 74

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++ +             D+I      + K         KE++  K    + I T
Sbjct: 75  LHKPRTLLGERLNDVVRATWAEVDVIGFCLPADQKIGPGDRFIAKELAGIKRTPKVAIVT 134

Query: 328 KSDLYST 334
           K+DL  +
Sbjct: 135 KTDLVDS 141


>gi|330822063|ref|XP_003291620.1| hypothetical protein DICPUDRAFT_39284 [Dictyostelium purpureum]
 gi|325078185|gb|EGC31850.1| hypothetical protein DICPUDRAFT_39284 [Dictyostelium purpureum]
          Length = 398

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 69/162 (42%), Gaps = 9/162 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I ++G  NAGKS+L NA+  + V  V+ I  TTRD +          +  +DT G+ +
Sbjct: 93  LNIAVIGAPNAGKSTLVNAIVGEKVCAVSHIEHTTRDAILGVYTEGDTQLLFNDTPGMIK 152

Query: 280 --TDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDL 331
               +   +E +   +  V+ +DL+L++ +       ++K  I+  ++     +  K+ L
Sbjct: 153 NFNKNTNVREFVNLAWTTVKESDLVLMVVDATNNNQPDTKYIINHLEDQMIELLK-KAKL 211

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                 E +            +L+ K + ++    +    +I
Sbjct: 212 EDIENGEIEDEKDFILVINKVDLVRKKEDLVELISELNEGNI 253


>gi|297194461|ref|ZP_06911859.1| GTP-binding protein Era [Streptomyces pristinaespiralis ATCC 25486]
 gi|197718729|gb|EDY62637.1| GTP-binding protein Era [Streptomyces pristinaespiralis ATCC 25486]
          Length = 321

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 9/138 (6%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           ++ +  E          +G  NAGKS+L NAL  + VAI +  P TTR  +   +     
Sbjct: 11  ARTQSSEAPHRAGFACFVGRPNAGKSTLTNALVGQKVAITSTRPQTTRHTVRGIVHRPEA 70

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPK 318
            + + DT G+ +   ++ +             D+I      + K         KE++  K
Sbjct: 71  QLILVDTPGLHKPRTLLGERLNDIVRTTWAEVDVIGFCLPADQKLGPGDRFIAKELAGIK 130

Query: 319 NIDFIFIGTKSDLYSTYT 336
               + I TK+DL  + T
Sbjct: 131 KTPKVAIITKTDLVDSKT 148


>gi|168217875|ref|ZP_02643500.1| GTP-binding protein [Clostridium perfringens NCTC 8239]
 gi|182380077|gb|EDT77556.1| GTP-binding protein [Clostridium perfringens NCTC 8239]
          Length = 440

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 24/157 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L     V   DTAG  
Sbjct: 13  IHISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFVDTAGFD 72

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---------------KKEISFPK----- 318
           +  +I  K  +++T   V   D+ L+   ++                 KEI +       
Sbjct: 73  DEGEIG-KLRVEKTEEVVGKTDVALITLSLSEILEAIKSNIEFKDMLSKEILWLNKLKKA 131

Query: 319 NIDFIFIGTKSDLYSTYTEE--YDHLISSFTGEGLEE 353
               I +  K DL      E   D      T E  ++
Sbjct: 132 KKPAILVINKCDLVPNNLIESKIDLKDIDKTNESNKD 168


>gi|325926993|ref|ZP_08188268.1| GTP-binding protein Era [Xanthomonas perforans 91-118]
 gi|325542652|gb|EGD14119.1| GTP-binding protein Era [Xanthomonas perforans 91-118]
          Length = 285

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 85/224 (37%), Gaps = 29/224 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDD 282
           ++G  N GKS+L NAL    V+IV++ P TTR  L          + + DT G+ RE   
Sbjct: 1   MIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKR 60

Query: 283 IVEKEGIKRTFLEVENADLILLLKEI---NSKKEISF-----------PKNIDFIFIGTK 328
            + +   +     +E  D  +L+ E    + +  ++F                   +  K
Sbjct: 61  AMNRVMNRAARGSLEGVDAAVLVIEAGRWDEEDTLAFRVLSDAGVPVVLVVNKVDRLKDK 120

Query: 329 SDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           + L+    +          H +S+   +GL+ L+  +  ++            + +   +
Sbjct: 121 TALFPFLAQVSEGRTFAAVHPVSALKRKGLDALVGDLLKLVPEAEAMFGEDEITDRSQRF 180

Query: 382 HLSQTVRYLEMASLNEK-----DCGLDIIAENLRLASVSLGKIT 420
              + VR   M  L E+        ++  AE+   A + +G + 
Sbjct: 181 LAGELVREQLMRQLGEELPYATTVEIERFAED--GALLRIGAVI 222


>gi|291533667|emb|CBL06780.1| small GTP-binding protein domain [Megamonas hypermegale ART12/1]
          Length = 158

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 10/135 (7%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           + N   I   G  NAGKSS+ NAL  +++A+V+ + GTT D +   ++L     V I DT
Sbjct: 8   LANRTHIAFFGIRNAGKSSIMNALTNQNIAVVSPVKGTTTDPVHKAMELLPLGPVNIIDT 67

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFP--KNIDFIFIG 326
           AG  +  ++  K  I++T   +   D+ +L+ +         +  +     KNI +I   
Sbjct: 68  AGFDDIGELG-KLRIEKTKQILNKTDIAILVIDTTLDFTDFDRDILKLITDKNIPYIVAY 126

Query: 327 TKSDLYSTYTEEYDH 341
            K DL   +  + ++
Sbjct: 127 NKVDLMPDFKPKNEN 141


>gi|283786182|ref|YP_003366047.1| GTP-binding protein [Citrobacter rodentium ICC168]
 gi|282949636|emb|CBG89255.1| GTP-binding protein [Citrobacter rodentium ICC168]
          Length = 301

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               +S+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPMSAETGMNVDTIAGIVRKHLPEAVHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|229820922|ref|YP_002882448.1| GTP-binding proten HflX [Beutenbergia cavernae DSM 12333]
 gi|229566835|gb|ACQ80686.1| GTP-binding proten HflX [Beutenbergia cavernae DSM 12333]
          Length = 493

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 79/224 (35%), Gaps = 23/224 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+  I             R+      + I G++NAGKSSL N L   
Sbjct: 237 ELDRRRIRTRMAKLRRQIDQMAPSRATKRASRHRAEVPSVAIAGYTNAGKSSLLNRLTGA 296

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G    ++DT G          E  + T  EV +AD++
Sbjct: 297 GVLVENALFATLDPTVRRAQTPDGRAYTLADTVGFVRALPHELVEAFRSTLEEVGDADVL 356

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTY-------TEEYDHL 342
           L + + +                +I    +   + +  K+D+              +   
Sbjct: 357 LHVVDASHPDPESQIAAVRTVLADIEGLTDTPEVLVLNKADIADAEVLTRLRSAGPHVVT 416

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           +S+ TG G+E L + +  +L     ++   +P  +  L H +  
Sbjct: 417 VSARTGAGIEHLRDVVAGLLPRPAVEVDVVVPYVRGDLVHRAHA 460


>gi|125974571|ref|YP_001038481.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405]
 gi|125714796|gb|ABN53288.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405]
          Length = 582

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 22/249 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +   +S L G    +L+ +   I       ++ +V     K  ++ +     D+   
Sbjct: 287 LAQLKYRVSRLVG-LGTQLSRLGGGIGTRGPGEKKLEVDRRHIKRRISFLEAQLKDVEKR 345

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-E 265
            +  +          I ++G++NAGKS+L N L + +V +  D    T D  T    L +
Sbjct: 346 RNSFRESRTRNAIPTIALVGYTNAGKSTLMNRLCESNV-LAEDKLFATLDPTTRSFRLSD 404

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------- 318
           G    + DT G          E  K T  E   AD+++ + + ++++     K       
Sbjct: 405 GREALLIDTVGFIRKLPHELVEAFKSTLEEAVYADMLIHVVDASNEEAEEQVKVVNDILE 464

Query: 319 -----NIDFIFIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                N   I    K D       L  +        IS+ TG+G++ ++  I+ +L    
Sbjct: 465 SLGAANKPVIMALNKMDMVKGGLRLAISNPNGRIFEISAVTGQGIDAMLEGIREMLPEDE 524

Query: 367 KKLPFSIPS 375
           K++   IP 
Sbjct: 525 KEVRLFIPY 533


>gi|217974268|ref|YP_002359019.1| GTP-binding protein Era [Shewanella baltica OS223]
 gi|304409363|ref|ZP_07390983.1| GTP-binding protein Era [Shewanella baltica OS183]
 gi|307303721|ref|ZP_07583474.1| GTP-binding protein Era [Shewanella baltica BA175]
 gi|217499403|gb|ACK47596.1| GTP-binding protein Era [Shewanella baltica OS223]
 gi|304351881|gb|EFM16279.1| GTP-binding protein Era [Shewanella baltica OS183]
 gi|306912619|gb|EFN43042.1| GTP-binding protein Era [Shewanella baltica BA175]
          Length = 338

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 28/215 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + V+I +  P TTR  +          +   DT G+   +
Sbjct: 47  VAIIGRPNVGKSTLINRLLGQKVSITSKKPQTTRHRIMGIHTDGPKQIVFIDTPGLHIEE 106

Query: 282 DIVEKEGIKRTFLEVENADL--ILLLKEI---NSKKEISFPK------NIDFIFIGTKSD 330
                  + R       AD+  ++ + +     +  E+   K          I    K D
Sbjct: 107 QRAINRLMNRA-AASSLADVAMVIFVVDGMTWTADDEMVLSKLRRGGEERQTILAINKVD 165

Query: 331 --------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                         +   Y  +    IS+  G  ++ ++    + +       P    + 
Sbjct: 166 NIKDKESLFPYLEEVAKKYPFDEILPISASKGTNVQRILELAAASIPEGPFFFPEDYVTD 225

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +   +  S+ VR   M  L + +   D     +  
Sbjct: 226 RSQRFMASEIVREKLMRFLGD-ELPYD-ATVEIEQ 258


>gi|256004068|ref|ZP_05429053.1| GTP-binding proten HflX [Clostridium thermocellum DSM 2360]
 gi|255991991|gb|EEU02088.1| GTP-binding proten HflX [Clostridium thermocellum DSM 2360]
          Length = 582

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 22/249 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +   +S L G    +L+ +   I       ++ +V     K  ++ +     D+   
Sbjct: 287 LAQLKYRVSRLVG-LGTQLSRLGGGIGTRGPGEKKLEVDRRHIKRRISFLEAQLKDVEKR 345

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-E 265
            +  +          I ++G++NAGKS+L N L + +V +  D    T D  T    L +
Sbjct: 346 RNSFRESRTRNAIPTIALVGYTNAGKSTLMNRLCESNV-LAEDKLFATLDPTTRSFRLSD 404

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------- 318
           G    + DT G          E  K T  E   AD+++ + + ++++     K       
Sbjct: 405 GREALLIDTVGFIRKLPHELVEAFKSTLEEAVYADMLIHVVDASNEEAEEQVKVVNDILE 464

Query: 319 -----NIDFIFIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                N   I    K D       L  +        IS+ TG+G++ ++  I+ +L    
Sbjct: 465 SLGAANKPVIMALNKMDMVKGGLRLAISNPNGRIFEISAVTGQGIDAMLEGIREMLPEDE 524

Query: 367 KKLPFSIPS 375
           K++   IP 
Sbjct: 525 KEVRLFIPY 533


>gi|188575916|ref|YP_001912845.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520368|gb|ACD58313.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 428

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 94/283 (33%), Gaps = 26/283 (9%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W          I        + +      ++ +  +      +   
Sbjct: 115 LAQLRHMATRLVRGWTHLERQRGGSIGLRGPGETQLETDRRLLQKRVEQLQQRLEKVEVQ 174

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +   +     +I ++G++NAGKS+LFNAL   + A V D    T D     + L G
Sbjct: 175 RTQMRRARMRSELPRIALVGYTNAGKSTLFNALTGAE-AYVADQLFATLDPTVRRIALPG 233

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEI 314
               ++DT G             + T  E  +ADL+L + +            ++   + 
Sbjct: 234 GSAILADTVGFVRDLPHELVAAFRSTLSEARDADLLLHIVDAADPLREERILQVDEVLQA 293

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSI 361
               ++  + +  K D        +D               +S+  G GLEEL + +   
Sbjct: 294 VGAGDLPQLLVFNKIDKIDGAEVRHDAQDGIPDPARRERVWVSARDGRGLEELQHALGQR 353

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           L          +P     L      +  +     +E+   LD+
Sbjct: 354 LDLCHLTGQLRLPPSAGRLRSRLHQLEVVRNEQSDEEGWLLDV 396


>gi|110802030|ref|YP_697443.1| GTP-binding protein [Clostridium perfringens SM101]
 gi|110682531|gb|ABG85901.1| GTP-binding protein [Clostridium perfringens SM101]
          Length = 440

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 22/140 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L     V   DTAG  
Sbjct: 13  IHISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFIDTAGFD 72

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---------------KKEISFPK----- 318
           +  +I  K  +++T   V   D+ L+   ++                 KEI +       
Sbjct: 73  DEGEIG-KLRVEKTEEVVGKTDVALITLSLSEILEAIKTNIEFKDMLSKEILWLNKLKKA 131

Query: 319 NIDFIFIGTKSDLYSTYTEE 338
               I +  K DL      E
Sbjct: 132 KKPAILVINKCDLVPNKLIE 151


>gi|56416939|ref|YP_154013.1| GTP-binding protein Era [Anaplasma marginale str. St. Maries]
 gi|222475305|ref|YP_002563722.1| GTP-binding protein ERA (era) [Anaplasma marginale str. Florida]
 gi|254995121|ref|ZP_05277311.1| GTP-binding protein Era [Anaplasma marginale str. Mississippi]
 gi|56388171|gb|AAV86758.1| GTP-binding protein ERA [Anaplasma marginale str. St. Maries]
 gi|222419443|gb|ACM49466.1| GTP-binding protein ERA (era) [Anaplasma marginale str. Florida]
          Length = 297

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 21/160 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G +NAGKS+L N L     +IVT    TTR  +    +     +  +DT G+    
Sbjct: 12  VAVVGATNAGKSTLINELVGFKASIVTPKVHTTRVRMNAVRNDGNVQLVFTDTPGVFAPK 71

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDLYS 333
            ++EK  +K  ++ +  AD+++L+ E  +       +        +I  + +  K+DL  
Sbjct: 72  TVLEKFLVKNAWMSIRGADVVVLVLEARNYLCSQVARVVATVKHSHIPAVAVLNKTDLLQ 131

Query: 334 TYTEEYDHLI-------------SSFTGEGLEELINKIKS 360
                                  S+  G G E L+  ++ 
Sbjct: 132 ECRIRGILAHVQSMHEFTGVFAISALHGLGTEALLTHLRE 171


>gi|294618386|ref|ZP_06697964.1| GTP-binding proten HflX [Enterococcus faecium E1679]
 gi|291595363|gb|EFF26678.1| GTP-binding proten HflX [Enterococcus faecium E1679]
          Length = 409

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 112/284 (39%), Gaps = 21/284 (7%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L  L GQ    L+ +   I        + +      +  +
Sbjct: 109 MRARSKEGKLQVELAQLEYLLPRLVGQ-GKTLSRLGGGIGTRGPGETKLETDRRHIRNKI 167

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             +     ++ +H  + +        ++I ++G++NAGKS++ N L + D     D    
Sbjct: 168 FAVKKELKEVEAHRERNRQKRKNSEIFQIGLIGYTNAGKSTILNLLTQAD-TYSKDQLFA 226

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D LT      EG+ + ++DT G  +       +    T  E +N DL+L + + +S  
Sbjct: 227 TLDPLTKRWRFAEGFEITVTDTVGFIQDLPTQLIDAFHSTLEESQNMDLLLHVVDASSPD 286

Query: 313 EISFP------------KNIDFIFIGTKSDLYS----TYTEEYDHLISSFTGEGLEELIN 356
            I               K +  + +  K+D       T T   + LIS+ T EG   LI 
Sbjct: 287 RILQEQTVLKLMDELNMKEMSILTVYNKADQIDPAMFTPTLFPNVLISTQTKEGKMALIE 346

Query: 357 KIKSILSNKFKKLPFSIPSHKRH-LYHLSQTVRYLEMASLNEKD 399
            IK  L         S+PS++   L  L +    L+ A + E +
Sbjct: 347 AIKRQLMELMTPYTLSVPSNEGQKLSELRRQTMVLDEAYMEETN 390


>gi|261402862|ref|YP_003247086.1| ferrous iron transport protein B [Methanocaldococcus vulcanius M7]
 gi|261369855|gb|ACX72604.1| ferrous iron transport protein B [Methanocaldococcus vulcanius M7]
          Length = 677

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 19/169 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS++FNAL  ++V I  +  G T +    +++ +G   KI D  G+  
Sbjct: 3   YEIALIGNPNVGKSTIFNALTGENVYI-GNWAGVTVEKKVGEMEYDGKKFKIVDLPGVYS 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPK-NIDFIFIGTKSDLYS 333
                  E + R +L  EN DL++ + +  + +      +   +   D +    K DL +
Sbjct: 62  LTANSIDEIVARDYLINENPDLVVNIADATALERNLYLTLQLMEIGADLLLALNKMDLAN 121

Query: 334 TYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLP 370
                 D               S+    G+++L   I   +  K KK  
Sbjct: 122 NLGISVDVKKLEDILGIKVVPLSASKKIGIDDLKKAIVEAVEEKRKKGE 170


>gi|110798691|ref|YP_694567.1| GTP-binding protein [Clostridium perfringens ATCC 13124]
 gi|110673338|gb|ABG82325.1| GTP-binding protein [Clostridium perfringens ATCC 13124]
          Length = 440

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 22/140 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L     V   DTAG  
Sbjct: 13  IHISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFVDTAGFD 72

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---------------KKEISFPK----- 318
           +  +I  K  +++T   V   D+ L+   ++                 KEI +       
Sbjct: 73  DEGEIG-KLRVEKTEEVVGKTDVALITLSLSEILEAIKSNIEFKDMLSKEILWLNKLKKA 131

Query: 319 NIDFIFIGTKSDLYSTYTEE 338
               I +  K DL      E
Sbjct: 132 KKPAILVINKCDLVPNNLIE 151


>gi|288920757|ref|ZP_06415057.1| GTP-binding proten HflX [Frankia sp. EUN1f]
 gi|288347833|gb|EFC82110.1| GTP-binding proten HflX [Frankia sp. EUN1f]
          Length = 502

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 102/301 (33%), Gaps = 34/301 (11%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---EDVQNFSSKEVLN 194
           E + Q  L+       +      W + ++   +              E       + +  
Sbjct: 193 EGKAQVELAQLQY---MLPRLRGWGESMSRAAASSGGRAPIGTRGPGETKIETDRRRLRT 249

Query: 195 DILFLKNDISSH--ISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            +  L+ ++++   + + K     R     + I G++NAGKSSL N L    V +   + 
Sbjct: 250 RMAKLRRELAAMATVRETKRSSRRRGAVPAVAIAGYTNAGKSSLLNRLTGAGVLVEDALF 309

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T    +      +G +  ++DT G          E  + T  EV +ADL+L + + ++ 
Sbjct: 310 ATLDPTVRRATLPDGRVFTLADTVGFVRHLPHQIVEAFRSTLEEVVDADLVLHVVDGSAP 369

Query: 312 KEI------------SFPKNIDFIFIGTKSDLYSTYTEEY-------DHLISSFTGEGLE 352
             +                 +  + +  K D     T             +S+ +G GL 
Sbjct: 370 DPMGQITAVREVLAEIDAAGVPELVVVNKVDAVDPTTLAVLRKAVPDAIFVSARSGTGLA 429

Query: 353 ELINKIKSILSNKFKKLPFSIPS------HKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
           EL++ +   + +   ++   +P        + H      +V +    +       + + A
Sbjct: 430 ELVDALSERIPHPEIEMSLLVPYTRGDLVSRIHRDGEVLSVEHTGAGTAVAARVPVSLAA 489

Query: 407 E 407
           E
Sbjct: 490 E 490


>gi|223558010|gb|ACM91016.1| putative GTP-binding protein [uncultured bacterium URE4]
          Length = 361

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 57/97 (58%), Gaps = 2/97 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           +  +I   G +N+GKS+L NALA ++V++V+D+PGTT D +   ++L G     + DTAG
Sbjct: 2   DRMQIAFFGATNSGKSTLVNALAGQEVSLVSDLPGTTTDPVRKAIELPGLGPCILVDTAG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
             +   +   E  +R+   ++  D+ +LL+  + + +
Sbjct: 62  YGDPGALG-AERERRSRATIDATDIAVLLRSGHPEDD 97


>gi|261419530|ref|YP_003253212.1| GTP-binding proten HflX [Geobacillus sp. Y412MC61]
 gi|319766346|ref|YP_004131847.1| GTP-binding proten HflX [Geobacillus sp. Y412MC52]
 gi|261375987|gb|ACX78730.1| GTP-binding proten HflX [Geobacillus sp. Y412MC61]
 gi|317111212|gb|ADU93704.1| GTP-binding proten HflX [Geobacillus sp. Y412MC52]
          Length = 415

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 17/217 (7%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           I+ H  + +        +++ ++G++NAGKS++FN L   D ++  ++   T D LT   
Sbjct: 180 IAEHRGRYRERRQKNQAFQVALVGYTNAGKSTIFNRLTAAD-SLEENLLFATLDPLTRKC 238

Query: 263 DLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--- 318
            L  GY V ++DT G  +          + T  EV  ADL+L + + +    ++  +   
Sbjct: 239 VLPCGYTVLVTDTVGFIQDLPTTLVAAFRSTLEEVTEADLLLHVVDSSHPDYVAHERTVS 298

Query: 319 ---------NIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                    +I  + +  KSD  ++    T     +IS+ +   ++ L   ++  +  + 
Sbjct: 299 RLLAELGASSIPMVTVYNKSDQKASEFIPTTTASIMISALSAADIDRLRYFLEEAVKQQM 358

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
            +   SIPS +  L    ++   L     NE+    D
Sbjct: 359 TRYDVSIPSGEGKLLARLKSDTILHEWHYNEQGGTYD 395


>gi|58582568|ref|YP_201584.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624454|ref|YP_451826.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58427162|gb|AAW76199.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368394|dbj|BAE69552.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 439

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 94/283 (33%), Gaps = 26/283 (9%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W          I        + +      ++ +  +      +   
Sbjct: 126 LAQLRHMATRLVRGWTHLERQRGGSIGLRGPGETQLETDRRLLQKRVEQLQQRLEKVEVQ 185

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +   +     +I ++G++NAGKS+LFNAL   + A V D    T D     + L G
Sbjct: 186 RTQMRRARMRSELPRIALVGYTNAGKSTLFNALTGAE-AYVADQLFATLDPTVRRIALPG 244

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEI 314
               ++DT G             + T  E  +ADL+L + +            ++   + 
Sbjct: 245 GSAILADTVGFVRDLPHELVAAFRSTLSEARDADLLLHIVDAADPLREERILQVDEVLQA 304

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSI 361
               ++  + +  K D        +D               +S+  G GLEEL + +   
Sbjct: 305 VGAGDLPQLLVFNKIDKIDGAEVRHDAQDGIPDPARRERVWVSARDGRGLEELQHALGQR 364

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           L          +P     L      +  +     +E+   LD+
Sbjct: 365 LDLCHLTGQLRLPPSAGRLRSRLHQLEVVRNEQSDEEGWLLDV 407


>gi|330898516|gb|EGH29935.1| GTPase Era [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 300

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280
           + I+G  N GKS+L N +  + +AI +  P TTR  +              DT G+ +  
Sbjct: 12  VAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGAVQAIYVDTPGMHKNG 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE--------------INSKKEISFPKNIDFIFIG 326
           +  + +   K     +++ D+++ + +              +   +            I 
Sbjct: 72  EKALNRYMNKTASAALKDVDVVIFVLDRTRWTDEDQMVLERVQYVQGPGILAINKTDRIE 131

Query: 327 TKSDLYS-------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            KSDL                  IS+  G  LE L + I S L       P    + +  
Sbjct: 132 DKSDLMPHLEWLQGQLPNASIVPISAQHGHNLEALESLIASHLPENDHFFPEDQITDRSS 191

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  ++ VR   M  L  +
Sbjct: 192 RFLAAELVREKIMRQLGAE 210


>gi|152999779|ref|YP_001365460.1| GTP-binding protein Era [Shewanella baltica OS185]
 gi|151364397|gb|ABS07397.1| GTP-binding protein Era [Shewanella baltica OS185]
          Length = 338

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 28/215 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L  + V+I +  P TTR  +          +   DT G+   +
Sbjct: 47  VAIIGRPNVGKSTLINRLLGQKVSITSKKPQTTRHRIMGIHTDGPKQIVFIDTPGLHIEE 106

Query: 282 DIVEKEGIKRTFLEVENADL--ILLLKEI---NSKKEISFPK------NIDFIFIGTKSD 330
                  + R       AD+  ++ + +     +  E+   K          I    K D
Sbjct: 107 QRAINRLMNRA-AASSLADVAMVIFVVDGMTWTADDEMVLSKLRRGGEERQTILAINKVD 165

Query: 331 --------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                         +   Y  +    IS+  G  ++ ++    + +       P    + 
Sbjct: 166 NIKDKESLFPYLEEVAKKYPFDEILPISASKGTNVQRILELAAASIPEGPFFFPEDYVTD 225

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           +   +  S+ VR   M  L + +   D     +  
Sbjct: 226 RSQRFMASEIVREKLMRFLGD-ELPYD-ATVEIEQ 258


>gi|117919051|ref|YP_868243.1| GTP-binding protein, HSR1-related [Shewanella sp. ANA-3]
 gi|117611383|gb|ABK46837.1| GTP-binding protein, HSR1-related [Shewanella sp. ANA-3]
          Length = 435

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 62/312 (19%), Positives = 110/312 (35%), Gaps = 32/312 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I      +     Q +      +   + ++G++NAGKS+LFNAL   DV    D    T
Sbjct: 173 NINKRLERVDKQREQSRRARKRSDMPTVSLVGYTNAGKSTLFNALTSSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------- 307
            D     LDL    V ++DT G             K T  E   ADL+L + +       
Sbjct: 232 LDPTLRKLDLPDGAVILADTVGFIRHLPHDLVAAFKATLQETRQADLLLHIVDCADENMA 291

Query: 308 -----INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEE 353
                + +  E      +  + +  K DL    T   ++          +S+    G + 
Sbjct: 292 DNFEQVQNVLEDIDAAEVMQLVVCNKIDLLEDVTPRIEYDEHGKPVRVWLSAQKRLGFDL 351

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL---- 409
           L+  I  ++     +    IP+   H  +L Q  R   +      D G  I++  L    
Sbjct: 352 LLKAITELIGEVIHEFTLKIPATAGH--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDAD 409

Query: 410 --RLASVSLGKI 419
             RLA  S G++
Sbjct: 410 WRRLAKQSQGEL 421


>gi|295102457|emb|CBL00002.1| GTPases [Faecalibacterium prausnitzii L2-6]
          Length = 214

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 17/204 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G++N GKSSL NAL    VA   D+   T D  +  L L  G  V + DT G    
Sbjct: 4   VSLVGYTNVGKSSLMNALCGPSVAE-ADMLFATLDPTSRKLVLPSGMAVLLVDTVGFVSR 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP-----------KNIDFIFIGTK 328
                 E  K T  E   +D+I+ + +  ++++E                +I  + +  K
Sbjct: 63  LPHNLVEAFKSTLEEAAWSDVIVRVADAGDAQREEQLAVTDEVLDGLDCADIPRLTVYNK 122

Query: 329 SDLYSTYTEEYDH-LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
            D     + + D  L S+ TG GL++L+ K+   LS++   +   +P  K  L    +  
Sbjct: 123 CDKPGALSFDPDILLTSAKTGYGLDKLLAKLDETLSDRVHTIRILLPYDKLGLAAPMRER 182

Query: 388 RYLEMASLNEKDCGLD-II-AENL 409
             +++    E    L+ I+  E+L
Sbjct: 183 GSVQLEEYREDGLYLEGIVKTEDL 206


>gi|148269536|ref|YP_001243996.1| small GTP-binding protein [Thermotoga petrophila RKU-1]
 gi|147735080|gb|ABQ46420.1| small GTP-binding protein [Thermotoga petrophila RKU-1]
          Length = 406

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 22/249 (8%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
           ++L+ +   I          +V     K  +  +     +I    +  +   + +    +
Sbjct: 130 EELSRLGGGIGTRGPGEPLLEVLRRHIKNRIAQLRKRLKEIEQERNTQRKQRLEKKIPHV 189

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            I+G++NAGKS+L   L   DV  V D    T + +T  L L+ G +V +SDT G     
Sbjct: 190 SIVGYTNAGKSTLLKVLTDSDV-YVADKLFATLEPVTRRLKLKSGRVVLVSDTVGFIRKL 248

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTKS 329
                   K T  E++ +D+++ L + +               E      I  I +  K 
Sbjct: 249 PHTIVSAFKATLEEIKYSDVLIHLVDASDPYLEEKMKASERVLEEIGADKIPRILVFNKI 308

Query: 330 DLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR-HLY 381
           DL      E           IS+    GL++L++ ++ I+  K  +    +P  K   +Y
Sbjct: 309 DLCPRERIETLKWKYPEALFISAEKRIGLDQLLDTLEEIMGQKDIQETLKVPLEKIGQIY 368

Query: 382 HLSQTVRYL 390
            L   +  L
Sbjct: 369 ALKDRLEIL 377


>gi|289192710|ref|YP_003458651.1| small GTP-binding protein [Methanocaldococcus sp. FS406-22]
 gi|288939160|gb|ADC69915.1| small GTP-binding protein [Methanocaldococcus sp. FS406-22]
          Length = 185

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 35/178 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL----------DLEGYLV 269
           +KI I+G  NAGKSS+ NAL  K V++V+++ GTT+  +              + E   +
Sbjct: 6   FKIAIIGPENAGKSSIMNALFGKYVSLVSEVGGTTKMPIKRYWGKLKIGRIKEEPEFVNL 65

Query: 270 KISDTAGIRETDDIVEKEG----IKRTFLEVENADLILLLKEINSKKEISFPK------- 318
              D  G+  T D          +++TF E+ ++D+I+ + + +     SF +       
Sbjct: 66  VFVDLGGLYTTTDKQSPIMTPKVLEKTFEEINDSDMIIHVIDGSVGLLRSFERLHHLLKF 125

Query: 319 --NIDFIFIGTKSDLYSTYTEEY------------DHLISSFTGEGLEELINKIKSIL 362
                 I +  K DL +   +E                +S+ T EG+ EL++ I   L
Sbjct: 126 RYQKPIIVVINKCDLLNDSNKENLKNYVERRIKNKPIFVSAKTFEGIPELLDIIIKYL 183


>gi|209542663|ref|YP_002274892.1| GTP-binding proten HflX [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530340|gb|ACI50277.1| GTP-binding proten HflX [Gluconacetobacter diazotrophicus PAl 5]
          Length = 436

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 100/265 (37%), Gaps = 29/265 (10%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ +  +  + S L   W   L   R          E +       + + + 
Sbjct: 126 AATKEGTLQVELAHLEYQRSRLVRTWTH-LERQRGGFGFLGGPGETQI--EADRRMIGDR 182

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           I+ LK ++        L    R       + ++G++NAGKS+LFNAL    V     +  
Sbjct: 183 IVRLKRELEQVRRTRGLHRAARRRVPFPVVALVGYTNAGKSTLFNALTGATVFAQDQLFA 242

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T    +       G  + +SDT G             + T  EV  AD+IL +++I+   
Sbjct: 243 TLDPTMRGIRLPSGRRIILSDTVGFISDLPTELIAAFRATLEEVAEADVILHVRDISHPD 302

Query: 313 EISFPKN-------------------IDFIFIGTKSDLY----STYTEEYDHLISSFTGE 349
             +   +                      I +  K+DL     +    +   +IS+ TGE
Sbjct: 303 SAAQRADVEDVLEGMAGSGTLEDDWRRRVIEVQNKADLIGGRDAVPPRKGSVVISAITGE 362

Query: 350 GLEELINKIKSILSNKFKKLPFSIP 374
           GL +L+  I S L+   + + ++IP
Sbjct: 363 GLPDLLAAIDSRLTEAMETVRYTIP 387


>gi|291516984|emb|CBK70600.1| GTP-binding protein Era [Bifidobacterium longum subsp. longum F8]
          Length = 354

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 6/178 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L NAL  K +AI +  P TTR  +   L  +   + + DT 
Sbjct: 44  YRSGF-VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAVRGILTADHAQLVLVDTP 102

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNIDFIFIGTKSDLY 332
           GI     ++ +         + + D++  L   + +    +      +   F   + D  
Sbjct: 103 GIHRPRTLLGQRLNDVVDESLADVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGT 162

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
             +      +++     G ++LINK+  I  N F      +P       +L++    L
Sbjct: 163 FKWRIPLIAIVTKIDELGRQQLINKLIEI--NDFADFSDIVPVSALKHDNLAEVKNVL 218


>gi|258544602|ref|ZP_05704836.1| GTP-binding protein Era [Cardiobacterium hominis ATCC 15826]
 gi|258520144|gb|EEV89003.1| GTP-binding protein Era [Cardiobacterium hominis ATCC 15826]
          Length = 300

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 18/172 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            I ++G  N GKS+L N L  + +AI +  P TTR  L          +   DT GI ++
Sbjct: 7   HIAVVGRPNVGKSTLINHLIGQKIAITSKKPQTTRHALLGIHTTGENQIIFVDTPGIHQS 66

Query: 281 DDIVEKEGIKRT-FLEVENADLILLLKEIN--SKKEISFPK-----NIDFIFIGTKSDLY 332
            +      + RT +  ++  DLIL + E    + ++    K     +   I +  K D  
Sbjct: 67  REKAINRHMNRTAWQSMDYVDLILQVSEAGRWNDEDARIAKALAAGDKPVIQVPNKIDRL 126

Query: 333 STYT---EEYDHLISSFTGEGL-------EELINKIKSILSNKFKKLPFSIP 374
              T   +E +H+ S    + +        + ++ ++  L     + P+  P
Sbjct: 127 RDKTVLLKELEHIQSLGNWQAIIPVSAQQRQNLDTLERALIPFLPEQPWLYP 178


>gi|311739636|ref|ZP_07713471.1| GTP-binding protein HflX [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305452|gb|EFQ81520.1| GTP-binding protein HflX [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 497

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 94/236 (39%), Gaps = 33/236 (13%)

Query: 188 SSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV 244
             + +  ++  L+ ++ +     + K  +  R+   +I I G++NAGKSSL NA+    V
Sbjct: 234 DRRRIRTEMARLRKELRAMKTAREVKRSKRQRSTIAQIAIAGYTNAGKSSLINAMTGAGV 293

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D  T    L +G  V  +DT G          E  K T  EV  AD++L
Sbjct: 294 -LVEDALFATLDPTTRRATLADGRQVVFTDTVGFVRHLPTQLVEAFKSTLEEVLAADIML 352

Query: 304 LLKEINSKKEISF----------------PKNIDFIFIGTKSD---------LYSTYTEE 338
            + + +    +                   +    I +  K D         L      E
Sbjct: 353 HVVDGSDPFPLKQIEAVNQVIYDIVSETGEQAPPEIIVINKIDQADPLVLAELRHVLDHE 412

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVRYLE 391
               +S+ TGEG++EL  +++  L+++   +   +P  +       H   TVR+ E
Sbjct: 413 DVVYVSARTGEGIDELTARVELFLNSRDSHVKLQVPFTRGDVVARVHAEGTVRHEE 468


>gi|227485436|ref|ZP_03915752.1| GTP-binding protein Era [Anaerococcus lactolyticus ATCC 51172]
 gi|227236566|gb|EEI86581.1| GTP-binding protein Era [Anaerococcus lactolyticus ATCC 51172]
          Length = 295

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 91/206 (44%), Gaps = 26/206 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ I ++G +N GKS+L   + K+ ++I+++ P TTRD + I  + E   +   DT 
Sbjct: 1   MKSGF-ISVVGRANVGKSTLMEKILKEKISIISNKPQTTRDKINIIYNDEDSQLIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI----------DFIFI 325
           GI++  +++++  +  +   +  +D++  + +    KEI     +            I +
Sbjct: 60  GIQKPRNVLQERLLSFSKDSLNESDVVTYVVD--ESKEIGKLDQMIIDELRKVRVPIILL 117

Query: 326 GTKSDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K DL +                 +    IS+     +   I+ +KS L +        
Sbjct: 118 INKIDLLNEEEIEEIKNLYEEVGLFDKIIAISALDDTNVHTYIDGVKSYLDDGPAYYDRD 177

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEK 398
           + + K   + +S+ +R   +  L+E+
Sbjct: 178 MITDKTERFVVSEIIREKALRLLSEE 203


>gi|261345214|ref|ZP_05972858.1| GTP-binding protein HflX [Providencia rustigianii DSM 4541]
 gi|282566909|gb|EFB72444.1| GTP-binding protein HflX [Providencia rustigianii DSM 4541]
          Length = 426

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 104/293 (35%), Gaps = 26/293 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ + 
Sbjct: 114 RARTHEGKLQVELAQLRHLSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDKIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+      +   + ++G++NAGKSSLFN +   DV    D    T
Sbjct: 173 QILSRLGRVEKQREQGRQSRNKADIPTVSLVGYTNAGKSSLFNRMTSADV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+     V ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVNDVGTVVLADTVGFIRHLPHDLVAAFKATLQETREATLLLHVIDAADNRL 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 + S  E      I  + +  K D+   +    D           +S+ TGEG+ 
Sbjct: 292 DENIQAVESVLEEIEANEIPTLLVMNKVDMLEDFVPRIDRDEDNKPARVWVSAQTGEGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDI 404
            L+  +   LS +       +P ++  L      ++ +E     E    GL++
Sbjct: 352 LLLQALTERLSGEIAHFELRLPPNEGRLRSRFYQLQSIEREWQEEDGTIGLEV 404


>gi|221234757|ref|YP_002517193.1| GTP-binding protein hflX [Caulobacter crescentus NA1000]
 gi|220963929|gb|ACL95285.1| GTP-binding protein hflX [Caulobacter crescentus NA1000]
          Length = 446

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 29/207 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSSLFNALAKK 242
               + +   IL LK ++        L    R       + ++G++NAGKS+LFN L + 
Sbjct: 177 EIDRRLIAGTILKLKKELEEVRRTRTLHRSARKKVPYPTVALVGYTNAGKSTLFNRLTEA 236

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V +  D+   T D     + L +G    +SDT G          E  + T  EV+ AD+
Sbjct: 237 EV-LAKDMLFATLDPTLRTVKLPDGRPAIMSDTVGFISDLPHELVEAFRATLEEVQEADV 295

Query: 302 ILLLKEINSKK---------------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--- 343
           +L ++++ +                  ++  +    + +  K DL S    E        
Sbjct: 296 VLHVRDVANPDSEAQARDVETVLAELGVTLDEGKTVVEVWNKVDLLSEDDREIVEGQARR 355

Query: 344 ------SSFTGEGLEELINKIKSILSN 364
                 S+ TGEG E L+ +I  ++ +
Sbjct: 356 NDASAVSAVTGEGCEALLRRIAGLIDD 382


>gi|329934648|ref|ZP_08284689.1| GTP-binding protein Era [Streptomyces griseoaurantiacus M045]
 gi|329305470|gb|EGG49326.1| GTP-binding protein Era [Streptomyces griseoaurantiacus M045]
          Length = 317

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 9/136 (6%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           S  +  E +        +G  NAGKS+L NAL  + VAI ++ P TTR  +   +     
Sbjct: 7   SSEEPAEAVHRAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEA 66

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPK 318
            + + DT G+ +   ++ +             D+I      + K         KE++  K
Sbjct: 67  QLILVDTPGLHKPRTLLGERLNDVVRATWAEVDVIGFCLPADQKLGPGDRFIAKELAGIK 126

Query: 319 NIDFIFIGTKSDLYST 334
               + I TK+DL  +
Sbjct: 127 RTPKVAIVTKTDLVDS 142


>gi|254514115|ref|ZP_05126176.1| GTP-binding protein Era [gamma proteobacterium NOR5-3]
 gi|219676358|gb|EED32723.1| GTP-binding protein Era [gamma proteobacterium NOR5-3]
          Length = 299

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 73/199 (36%), Gaps = 23/199 (11%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  R GY + I+G  N GKS+L N L  + ++I +  P TTR  +      +   +  
Sbjct: 1   MSEKTRCGY-VAIVGRPNVGKSTLLNHLLGQKLSITSRKPQTTRHQVLGIKTTDSAQMLF 59

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENA-DLILLLKEINSKKEIS-------FPKNIDFI 323
            DT GI   +D      + RT      A D+ +++ +    ++            N   +
Sbjct: 60  VDTPGIHGGEDRALNRFMNRTASAALAAVDIAVMVVDRGEWRDDDERVLRSCVASNAPVL 119

Query: 324 FIGTKSDLYST----------YTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKL 369
            +  K DL               E  D      +S+  G  L+ L  +I   L       
Sbjct: 120 LVINKVDLEDNPNAILPSLQSLAERADFAALIPLSALRGRNLDVLEAEIVKRLPQGPFLF 179

Query: 370 PFSIPSHKRHLYHLSQTVR 388
                + +   + +++ VR
Sbjct: 180 EEDEITDRSTRFLVAEIVR 198


>gi|220912720|ref|YP_002488029.1| GTP-binding protein Era [Arthrobacter chlorophenolicus A6]
 gi|219859598|gb|ACL39940.1| GTP-binding protein Era [Arthrobacter chlorophenolicus A6]
          Length = 319

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L NAL  K VAI +  P TTR  +   +  +   + + DT G
Sbjct: 17  RAGFSV-LVGRPNAGKSTLTNALVGKKVAITSAKPQTTRHTIRGIVHRDDAQLILVDTPG 75

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           +     ++ K         +   D I      N K          +++       I I T
Sbjct: 76  LHRPRTLLGKRLNDLVADTLAEVDAIGFCLPANEKIGPGDKFIAAQLAAVGGKPVIAIVT 135

Query: 328 KSDLYST 334
           K+DL   
Sbjct: 136 KADLVDK 142


>gi|294893594|ref|XP_002774550.1| GTP-binding protein era, putative [Perkinsus marinus ATCC 50983]
 gi|239879943|gb|EER06366.1| GTP-binding protein era, putative [Perkinsus marinus ATCC 50983]
          Length = 422

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ ++G  NAGKSSL N +  + +A V+    TTR+ +   +    + + + D  G+  
Sbjct: 86  LKVALIGAPNAGKSSLMNCMLNQSLAAVSPKVNTTREEIRGVVTDGDHQIVVIDAPGVIP 145

Query: 280 TDDIVEKEGIKR-TFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338
            +       + R  +    + DL+LL+ +   + ++          I  K DL + Y E 
Sbjct: 146 ANQTKSCRALARDAWTGYNDCDLVLLVVDTLRRPDMDLVD--LIRRIAPKPDLSTEYHER 203

Query: 339 YD 340
            +
Sbjct: 204 RN 205


>gi|16125990|ref|NP_420554.1| GTP-binding protein HflX [Caulobacter crescentus CB15]
 gi|13423166|gb|AAK23722.1| GTP-binding protein HflX [Caulobacter crescentus CB15]
          Length = 427

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 29/207 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSSLFNALAKK 242
               + +   IL LK ++        L    R       + ++G++NAGKS+LFN L + 
Sbjct: 158 EIDRRLIAGTILKLKKELEEVRRTRTLHRSARKKVPYPTVALVGYTNAGKSTLFNRLTEA 217

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V +  D+   T D     + L +G    +SDT G          E  + T  EV+ AD+
Sbjct: 218 EV-LAKDMLFATLDPTLRTVKLPDGRPAIMSDTVGFISDLPHELVEAFRATLEEVQEADV 276

Query: 302 ILLLKEINSKK---------------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--- 343
           +L ++++ +                  ++  +    + +  K DL S    E        
Sbjct: 277 VLHVRDVANPDSEAQARDVETVLAELGVTLDEGKTVVEVWNKVDLLSEDDREIVEGQARR 336

Query: 344 ------SSFTGEGLEELINKIKSILSN 364
                 S+ TGEG E L+ +I  ++ +
Sbjct: 337 NDASAVSAVTGEGCEALLRRIAGLIDD 363


>gi|238060555|ref|ZP_04605264.1| GTP-binding protein Era [Micromonospora sp. ATCC 39149]
 gi|237882366|gb|EEP71194.1| GTP-binding protein Era [Micromonospora sp. ATCC 39149]
          Length = 301

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 78/218 (35%), Gaps = 23/218 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
              R G+    +G  NAGKS+L NAL    +AI ++ P TTR ++   L      + + D
Sbjct: 10  RPYRAGF-ACFVGRPNAGKSTLTNALVGTKIAITSNKPQTTRHIIRAVLHRPDSQLVLVD 68

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           T G+     ++ +             D+I L    +                     + +
Sbjct: 69  TPGLHRPRTLLGERLNDLVRSTWSEVDVIGLCVPADEPVGRGDRFITGELAELKATVLAV 128

Query: 326 GTKSDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            TK+DL                        +S+ +G  L+ L+N +   L    +  P  
Sbjct: 129 VTKTDLVDKKRLAEQLLAVSEMGDFAAVVPVSAVSGHQLDTLVNVMTDYLPESPQLYPDD 188

Query: 373 IPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL 409
           + +       +++ +R   +  + +E    + ++ E +
Sbjct: 189 MLTDDPEQVLVAELIREAALEGVRDELPHSIAVVVEEM 226


>gi|298346303|ref|YP_003718990.1| GTP-binding protein Era family protein [Mobiluncus curtisii ATCC
           43063]
 gi|298236364|gb|ADI67496.1| GTP-binding protein Era family protein [Mobiluncus curtisii ATCC
           43063]
          Length = 350

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 77/207 (37%), Gaps = 23/207 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+   ++G  N GKS+L NA+  + +AI +D P TTR V    +    + + + D
Sbjct: 52  EDFRAGF-AAVIGRPNVGKSTLINAMVGRKIAITSDRPETTRRVARGIVHRPDFQLILVD 110

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIF 324
           T GI     ++ +             D+ +     +           +      +   I 
Sbjct: 111 TPGIHRPRTLLGQRLNDMVDDAFSEVDVAVFCVPADQPIGPGDRRIVETQLKTAHFPAIA 170

Query: 325 IGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + TK+D  S              +       IS+  G  ++ LI+ +   L       P 
Sbjct: 171 VVTKTDAASREQIAEQLLAVSQLHDFAEIVPISAHQGTQVQTLIDLLGQRLPLSPPLYPR 230

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEK 398
              + +     +S+ +R   + SL+++
Sbjct: 231 DQVTDEDDTAMISELIREAALESLSQE 257


>gi|297530500|ref|YP_003671775.1| GTP-binding proten HflX [Geobacillus sp. C56-T3]
 gi|297253752|gb|ADI27198.1| GTP-binding proten HflX [Geobacillus sp. C56-T3]
          Length = 415

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 17/217 (7%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           I+ H  + +        +++ ++G++NAGKS++FN L   D ++  ++   T D LT   
Sbjct: 180 IAEHRGRYRERRQKNQAFQVALVGYTNAGKSTIFNRLTAAD-SLEENLLFATLDPLTRKC 238

Query: 263 DLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--- 318
            L  GY V ++DT G  +          + T  EV  ADL+L + + +    ++  +   
Sbjct: 239 VLPCGYTVLVTDTVGFIQDLPTTLVAAFRSTLEEVTEADLLLHVVDSSHPDYVAHERTVS 298

Query: 319 ---------NIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                    +I  + +  KSD  ++    T     +IS+ +   ++ L   ++  +  + 
Sbjct: 299 RLLAELGASSIPMVTVYNKSDQKASEFIPTTTASIMISALSAADIDRLRYFLEEAVKQQM 358

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
            +   SIPS +  L    ++   L     NE+    D
Sbjct: 359 ARYDVSIPSGEGKLLARLKSDTILHEWHYNEQGGTYD 395


>gi|255036879|ref|YP_003087500.1| GTP-binding proten HflX [Dyadobacter fermentans DSM 18053]
 gi|254949635|gb|ACT94335.1| GTP-binding proten HflX [Dyadobacter fermentans DSM 18053]
          Length = 411

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 19/218 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAI 246
             + V + I FLK  +     Q       R+   ++ I+G++N GKS+L   L+K DV  
Sbjct: 174 DRRIVKDRIAFLKEKLEKVDKQSVTRRKERDRLVRVAIVGYTNVGKSTLMRNLSKADV-F 232

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     +++E     ++DT G          E  K T  EV  AD+++ + 
Sbjct: 233 AENKLFATVDSTVRKVNMENIPFLLTDTVGFIRKLPTTLIESFKSTLDEVREADILMHVV 292

Query: 307 EI------------NSKKEISFPKNIDFIFIGTKSDLY--STYTEEYDHLISSFTGEGLE 352
           +I            N   E     N   I +  K DLY  S   EE +   +  T E L+
Sbjct: 293 DISHASFEEHLDVVNKTLEEIGAANKPSILVFNKIDLYKPSYNDEEEEQAAAPSTQEILD 352

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
           +L    +S ++ K   + F     K ++  L +T+  L
Sbjct: 353 QLK---RSYIAEKADHVVFISAQEKENIDELKRTLFSL 387


>gi|227500710|ref|ZP_03930759.1| GTP-binding protein Era [Anaerococcus tetradius ATCC 35098]
 gi|227217168|gb|EEI82517.1| GTP-binding protein Era [Anaerococcus tetradius ATCC 35098]
          Length = 293

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 95/204 (46%), Gaps = 21/204 (10%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +I++G+ + ++G +N GKS+L   +  + ++I+++   TTRD + I  + E   +   DT
Sbjct: 1   MIKSGF-VSVVGRANVGKSTLMEKILGEKISIISNKAQTTRDKIQIIYNDEESQIIFLDT 59

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIG-- 326
            GI+   + ++++ +  +   ++ +D++ ++ + +        + ++    I    I   
Sbjct: 60  PGIQTPRNKLQEKLLTFSEESLKESDIVTMIVDDSLEIGRIDTEILAMLDKIKLPKILLI 119

Query: 327 TKSDL------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            K+DL            +  Y  +    IS+  G+ ++  I  +K +L          + 
Sbjct: 120 NKTDLLAKDKIEKIRANFRAYDFDRILEISALEGKNVDIYIKTVKDMLDFGPAYYDRDMI 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEK 398
           + +   + +S+ +R   + +L+E+
Sbjct: 180 TDRSERFIVSEIIREKALRNLSEE 203


>gi|239625640|ref|ZP_04668671.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519870|gb|EEQ59736.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 424

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 101/294 (34%), Gaps = 38/294 (12%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +      L G   + L+ +   I       ++ +       + ++ +      +  H
Sbjct: 127 LAQLKYRAVRLVG-MRNSLSRLGGGIGTRGPGEKKLETDRRLIHQRISQLKEELEAVKRH 185

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
               +            I+G++NAGKS+L N L    +     +  T        +  +G
Sbjct: 186 REVTRQQREKDFALTAAIVGYTNAGKSTLLNRLTGAGILAEDKLFATLDPTTRSFVMEDG 245

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------E 313
             + ++DT G          E  K T  E   +D+IL + + ++ +             E
Sbjct: 246 QQILLTDTVGFIRKLPHHLIEAFKSTLEEARYSDIILHVVDCSNPQMDMQMHVVKETLRE 305

Query: 314 ISFPKNIDFIFIGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           +          +  K+D             +   ++ +Y   IS+ TGEG++EL   +++
Sbjct: 306 LEIVDKTTVT-VFNKTDRLNEEGTEDGMHPVPRDFSSDYQVRISARTGEGIDELEQILRT 364

Query: 361 ILSNKFKKLPFSIPSHK--------RHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
           I+ ++   L    P  +        R+   L +   Y +     +     ++ A
Sbjct: 365 IIRSRRIFLEKVFPYSQTGRIQTIRRYGQLLEE--EYRDDGVAVKAYVPAELFA 416


>gi|302392990|ref|YP_003828810.1| GTP-binding proten HflX [Acetohalobium arabaticum DSM 5501]
 gi|302205067|gb|ADL13745.1| GTP-binding proten HflX [Acetohalobium arabaticum DSM 5501]
          Length = 606

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 22/199 (11%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L+ +I+            R    I ++G++NAGKS+L N L  +  A+  D    T D 
Sbjct: 358 NLEAEINRVQQTRATQRSRRKLPTISLVGYTNAGKSTLLNRLT-EATAVTKDELFATLDS 416

Query: 258 LTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  L L  G  V ISDT G             + T  EV  AD++L + ++      + 
Sbjct: 417 NTCRLKLPVGRKVLISDTVGFIRKLPHQLIAAFRATLEEVTEADILLHVVDVTEADYKAK 476

Query: 317 PK------------NIDFIFIGTKSDLYSTYTE--------EYDHLISSFTGEGLEELIN 356
                         +   I I  K DL     +        +   +IS+  G+G++ L++
Sbjct: 477 MDAVVEVLSELNVLDKPIITILNKIDLLKDQKQVELIQQNLKNSLVISAKEGQGVDRLLD 536

Query: 357 KIKSILSNKFKKLPFSIPS 375
           +I ++L +   +L   +P 
Sbjct: 537 EISNLLLDTMVELELLLPY 555


>gi|262277402|ref|ZP_06055195.1| GTP-binding protein EngA [alpha proteobacterium HIMB114]
 gi|262224505|gb|EEY74964.1| GTP-binding protein EngA [alpha proteobacterium HIMB114]
          Length = 269

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 60/138 (43%), Gaps = 11/138 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + I+G  N GKS++FN +  K+++ V++I GTT   +    +     + + D  G+++
Sbjct: 5   FNVCIIGKPNVGKSTIFNKILGKNISDVSEISGTTVHPIISPKEFNNLNINLIDLGGLKK 64

Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTK 328
                D  +K     T  ++  ++++  + + +            +   K    I I  K
Sbjct: 65  KSKSHDNKQKLITSYTIKQLNMSNVVFFVLDGSDVITKNDKQLFRLILNKLKSVIVIINK 124

Query: 329 SDLYSTYTEEYDHLISSF 346
           +DL     ++ ++    F
Sbjct: 125 TDLIQENLKKKENYFKFF 142


>gi|325981701|ref|YP_004294103.1| GTP-binding protein Era [Nitrosomonas sp. AL212]
 gi|325531220|gb|ADZ25941.1| GTP-binding protein Era [Nitrosomonas sp. AL212]
          Length = 297

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 21/163 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N L K+ ++I +    TTR  +   L  E       DT G +   
Sbjct: 12  VAIIGRPNVGKSTLLNKLVKQKISITSKKAQTTRFRINGILTDEQTQFVFVDTPGFQTHY 71

Query: 282 DIVEKEGIKRTF-LEVENADLILLLKEIN--SKKEIS----FPKNIDFIFIGTKSDLYST 334
             V    + R     +   ++IL + E     +++I+     P N+  I +  K D  + 
Sbjct: 72  ASVLNTAMNRVVTQSMREVNVILFVIEAMCLDQRDIAVLKILPANVPIILVVNKIDKLAD 131

Query: 335 YTEEYDH--------------LISSFTGEGLEELINKIKSILS 363
                                 +S+     L EL+N I++ L 
Sbjct: 132 KNRLLPFLGEVAQVVKFSDIIPVSAMYKIQLAELLNTIRNYLP 174


>gi|182625984|ref|ZP_02953748.1| GTP-binding protein [Clostridium perfringens D str. JGS1721]
 gi|177908791|gb|EDT71298.1| GTP-binding protein [Clostridium perfringens D str. JGS1721]
          Length = 440

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 24/157 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L     V   DTAG  
Sbjct: 13  IHISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFVDTAGFD 72

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---------------KKEISFPK----- 318
           +  +I  K  +++T   V   D+ L+   ++                 KEI +       
Sbjct: 73  DEGEIG-KLRVEKTEEVVGKTDVALITLSLSEILEAIKSNIEFKDMLSKEILWLNKLKKA 131

Query: 319 NIDFIFIGTKSDLYSTYTEE--YDHLISSFTGEGLEE 353
               I +  K DL      E   D      T E  ++
Sbjct: 132 KKPAILVINKCDLVPNNLIESKIDLKDIDKTNESNKD 168


>gi|240047402|ref|YP_002960790.1| GTP-binding protein Era [Mycoplasma conjunctivae HRC/581]
 gi|239984974|emb|CAT04967.1| GTP-binding protein [Mycoplasma conjunctivae]
          Length = 292

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 77/197 (39%), Gaps = 20/197 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N+GKSSL N L    V+IV+    TTRD++    + +   +   DT G  +  
Sbjct: 7   VSIVGLPNSGKSSLLNTLLDFPVSIVSSKSQTTRDLINGIYNEDNLQIVFVDTPGFHKKI 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIF-IGTKSDLYS- 333
           + +     K     +E+ D++L L  +N      S++ +    N+     + TK DL   
Sbjct: 67  NNLSNVLNKAVINSIEDIDVVLFLHPVNWKISNQSQQLVEKIANVKNKIAVLTKLDLIDD 126

Query: 334 ------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                           +     S+      ++L+ +IKS              + +   +
Sbjct: 127 QQIIETKVAELKQLGFKKVFGYSTEFKVAKQDLLEEIKSYAYESDLFFEQEDITDQPARF 186

Query: 382 HLSQTVRYLEMASLNEK 398
              + +R   + +L E+
Sbjct: 187 FAKEIIRKQLLLNLKEE 203


>gi|307108122|gb|EFN56363.1| hypothetical protein CHLNCDRAFT_144853 [Chlorella variabilis]
          Length = 581

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 77/206 (37%), Gaps = 43/206 (20%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I I+G  N GKS+L N L   +  +    PG TRD +   ++ EG  V++ DTAG   
Sbjct: 303 LRIAIMGLPNVGKSTLANWLLGSERCLTGPEPGLTRDAIKERIEWEGQEVELVDTAGWIR 362

Query: 280 TDD---------------IVEKEGIKR---------------------TFLEVENA-DLI 302
                             + E  G+ +                     T  E+  A D++
Sbjct: 363 RTKLANYDESGGAVAQQTVAEARGVMQFVHAVALLVDAARCLELGQGLTHREITLASDVV 422

Query: 303 ----LLLKEINSKKEISFPKNIDFIFIGTKS--DLYSTYTEEYDHLISSFTGEGLEELIN 356
               LLL   N    ++  K    + +  ++  D     +      +S+ TGEG+  L+ 
Sbjct: 423 AEGRLLLIVANKLDTLTPAKRQHAMRLVREAVEDNLPDVSGVPIIGMSAMTGEGVGMLLP 482

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYH 382
              ++     +++P S  +  +   +
Sbjct: 483 AAAAMYRRWNQRVPTSHLNRWKAAEY 508



 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPG--TTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I+G  N GKS+LFN L ++  A+V D PG   TRD       L     ++ DT+G+  
Sbjct: 41  VAIIGRPNVGKSALFNRLVRRREAVVHDTPGGHVTRDYQEGVARLADLRFRVIDTSGLEP 100

Query: 280 --TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS 329
               D ++      T   +  +D+ L L + ++    + P + +      K+
Sbjct: 101 FLPGDSIQARATVLTATVLARSDIALFLVDGSTG---TLPADEELARWLRKT 149


>gi|166712458|ref|ZP_02243665.1| GTP-binding protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 439

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 95/283 (33%), Gaps = 26/283 (9%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W          I        + +      ++ +  +      +   
Sbjct: 126 LAQLRHVATRLVRGWTHLERQRGGSIGLRGPGETQLETDRRLLQKRVEQLQQRLEKVEVQ 185

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +   +     +I ++G++NAGKS+LFNAL   + A V D    T D     + L G
Sbjct: 186 RTQMRRARMRSELPRIALVGYTNAGKSTLFNALTGAE-AYVADQLFATLDPTVRRIALPG 244

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEI 314
               ++DT G             + T  E  +ADL+L + +            ++   + 
Sbjct: 245 GSAILADTVGFVRDLPHELVAAFRSTLSEARDADLLLHIVDAADPLREERILQVDEVLQA 304

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSI 361
               ++  + +  K D        +D               +S+  G GLEEL + +   
Sbjct: 305 VGAGDLPQLLVFNKIDKIDGAEVRHDAQDGIPDPARRERVWVSARDGRGLEELQHALGQR 364

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           L  +       +P     L      +  +     +E+   LD+
Sbjct: 365 LDLRHLTGQLRLPPSAGRLRSRLHQLEVVRNEQSDEEGWLLDV 407


>gi|56419859|ref|YP_147177.1| GTP-binding protein protease modulator [Geobacillus kaustophilus
           HTA426]
 gi|56379701|dbj|BAD75609.1| GTP-binding protein protease modulator [Geobacillus kaustophilus
           HTA426]
          Length = 415

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 17/217 (7%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           I+ H  + +        +++ ++G++NAGKS++FN L   D ++  ++   T D LT   
Sbjct: 180 IAEHRGRYRERRQKNQAFQVALVGYTNAGKSTIFNRLTAAD-SLEENLLFATLDPLTRKC 238

Query: 263 DLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--- 318
            L  GY V ++DT G  +          + T  EV  ADL+L + + +    ++  +   
Sbjct: 239 VLPCGYTVLVTDTVGFIQDLPTTLVAAFRSTLEEVTEADLLLHVVDSSHPDYVAHERTVS 298

Query: 319 ---------NIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                    +I  + +  KSD  ++    T     +IS+ +   ++ L   ++  +  + 
Sbjct: 299 RLLAELGASSIPMVTVYNKSDQKASEFIPTTTASIMISALSAADIDRLRYFLEEAVKQQM 358

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
            +   SIPS +  L    ++   L     NE+    D
Sbjct: 359 ARYDVSIPSGEGKLLARLKSDTILHEWHYNEQGGTYD 395


>gi|92113756|ref|YP_573684.1| GTP-binding protein Era [Chromohalobacter salexigens DSM 3043]
 gi|91796846|gb|ABE58985.1| GTP-binding protein Era [Chromohalobacter salexigens DSM 3043]
          Length = 299

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 70/202 (34%), Gaps = 25/202 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + I+G  N GKS+L N +  + ++I +  P TTR  +              DT G+    
Sbjct: 8   VAIVGRPNVGKSTLMNRILGQKISITSRRPQTTRHQVMGIKTEGETQFIYVDTPGMHIQT 67

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD 330
           R+ +  + +   +     + + D ++ + +     ++ ++   K        I    K D
Sbjct: 68  RDRNKAINRFMNQAATHALRDIDCVIFIVDRTKWTAEDDVVLEKLGQVPAPVILAVNKVD 127

Query: 331 --------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                         +           IS+  G  + EL  +I   L       P    + 
Sbjct: 128 WLEDKSSLLPWLDSISRKREFAAVVPISAKHGTNVPELEAEIAQRLPESVHYFPEDQITD 187

Query: 377 KRHLYHLSQTVRYLEMASLNEK 398
           K   +  ++ VR   M  L ++
Sbjct: 188 KSQRFLAAELVREKVMRQLGDE 209


>gi|251788699|ref|YP_003003420.1| GTP-binding protein Era [Dickeya zeae Ech1591]
 gi|247537320|gb|ACT05941.1| GTP-binding protein Era [Dickeya zeae Ech1591]
          Length = 301

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 72/199 (36%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +LI+ + E        E+   K        +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELIIFVVEGTHWTDDDEMVVNKLREQKAPVLLAINKVDNVA 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T+   H+               S+  G  ++ + + ++  L       P    + +  
Sbjct: 131 DKTKLLPHIQMLSEKMNFLDVVPISAEKGTHVDTIASIVRKHLPQAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 191 RFMASEIIREKLMRFLGEE 209


>gi|162148045|ref|YP_001602506.1| GTP-binding protein hflX [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786622|emb|CAP56204.1| GTP-binding protein hflX [Gluconacetobacter diazotrophicus PAl 5]
          Length = 428

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 100/265 (37%), Gaps = 29/265 (10%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ +  +  + S L   W   L   R          E +       + + + 
Sbjct: 118 AATKEGTLQVELAHLEYQRSRLVRTWTH-LERQRGGFGFLGGPGETQI--EADRRMIGDR 174

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           I+ LK ++        L    R       + ++G++NAGKS+LFNAL    V     +  
Sbjct: 175 IVRLKRELEQVRRTRGLHRAARRRVPFPVVALVGYTNAGKSTLFNALTGATVFAQDQLFA 234

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T    +       G  + +SDT G             + T  EV  AD+IL +++I+   
Sbjct: 235 TLDPTMRGIRLPSGRRIILSDTVGFISDLPTELIAAFRATLEEVAEADVILHVRDISHPD 294

Query: 313 EISFPKN-------------------IDFIFIGTKSDLY----STYTEEYDHLISSFTGE 349
             +   +                      I +  K+DL     +    +   +IS+ TGE
Sbjct: 295 SAAQRADVEDVLEGMAGSGTLEDDWRRRVIEVQNKADLIGGRDAVPPRKGSVVISAITGE 354

Query: 350 GLEELINKIKSILSNKFKKLPFSIP 374
           GL +L+  I S L+   + + ++IP
Sbjct: 355 GLPDLLAAIDSRLTEAMETVRYTIP 379


>gi|145588594|ref|YP_001155191.1| GTP-binding protein Era [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047000|gb|ABP33627.1| GTP-binding protein Era [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 311

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 7/120 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L NAL  + ++I +    TTR  +    + E       DT G +   
Sbjct: 7   IAIVGRPNMGKSTLLNALVGQKISITSRKAQTTRHRILGIQNREEAQFIFIDTPGFQTRL 66

Query: 282 DIVEKEGIKRTF-LEVENADLILLLKEI-----NSKKEIS-FPKNIDFIFIGTKSDLYST 334
                + + RT    +++ ++   + E      + KK +   P ++  + +  K DL+++
Sbjct: 67  MNTLNKALNRTVTTALQDVNVACFVVEAGYFGEDDKKVLKLLPDDLPVVLVLNKLDLFNS 126


>gi|324998271|ref|ZP_08119383.1| GTPase Era [Pseudonocardia sp. P1]
          Length = 301

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 83/227 (36%), Gaps = 26/227 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+    +G  NAGKS+L NAL  + VAI +  P TTR  +   +      + + DT G
Sbjct: 11  RSGF-ACFVGRPNAGKSTLTNALVGQKVAITSSRPQTTRHTIRGIVHRPDAQIVLVDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIG 326
           +     ++               D++      N K          +      +   + + 
Sbjct: 70  LHRPRTLLGSRLNDLVRETWAEVDVVGFCVPANEKVGKGDRFIAEELRKIATHTPVVAVV 129

Query: 327 TKSDLY--STYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           TK+DL       E                 S+ +G  ++ L + + + L    +  P   
Sbjct: 130 TKTDLARPEQVAERLTEVSGLMDFAEIVPTSAQSGYQVQLLADLLVARLPEGPQLYPDGD 189

Query: 374 PSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENLRLASVSLGKI 419
            + +     +++ VR   +  + +E    + ++ E   +A   L +I
Sbjct: 190 LTDEPEDVLVAELVREAALEGVRDELPHSIAVVVEE-TIAKKDLLEI 235


>gi|251825692|gb|ACT20914.1| GTP-binding protein [Pseudomonas fluorescens]
          Length = 433

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 105/297 (35%), Gaps = 27/297 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN + + DV    D    T
Sbjct: 174 QIKGRLEKVRSQREQSRRGRKRADIPTVSLVGYTNAGKSTLFNNVTQSDV-YAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     LDL+    + ++DT G          E  + T  E  N+DL+L + +      
Sbjct: 233 LDPTLRRLDLDDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDAAEPDR 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +               +++  + +  K DL      +             +S+  G GL+
Sbjct: 293 MLQIEQVMVVLGEIGAQDLPILEVYNKLDLLEGVEPQIQRDADGKPQRVWLSARDGTGLD 352

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            L   +  +L N       ++   +R     +Q      +      D G+ ++A  L
Sbjct: 353 LLKQAVAELLGNDL--FVGTLKLPQRFARLRAQFFELGAVQKEEHDDEGVCLLAVRL 407


>gi|311742993|ref|ZP_07716801.1| GTP-binding protein Era [Aeromicrobium marinum DSM 15272]
 gi|311313673|gb|EFQ83582.1| GTP-binding protein Era [Aeromicrobium marinum DSM 15272]
          Length = 305

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 10/126 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+    +G  N GKS+L NAL    VAI +  P TTR  +   +      + + DT G
Sbjct: 5   RSGF-ACFVGRPNVGKSTLTNALVGGKVAITSSRPQTTRHAIRGLVHRPDAQIVLVDTPG 63

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           +     ++ +             D I L    + +         +EI+  +    I + T
Sbjct: 64  LHRPRTLLGQRLNDLVRTTWAEVDTIGLCLPADERIGPGDRFLIREIAALRGKPVIAVAT 123

Query: 328 KSDLYS 333
           K+DL S
Sbjct: 124 KTDLVS 129


>gi|114319735|ref|YP_741418.1| GTP-binding protein, HSR1-related [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226129|gb|ABI55928.1| GTP-binding protein HflX [Alkalilimnicola ehrlichii MLHE-1]
          Length = 421

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 112/338 (33%), Gaps = 34/338 (10%)

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P  F G    E       A     ++ +     +  A       RAF   +  +L+  
Sbjct: 40  PDPRFFLGRGKVEELAARIPA---EGIDLVLIDHAISPAQ-ERNLERAF---RCRVLDRT 92

Query: 130 SLADLISSETEMQR----RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            L   I ++         ++ +  +    S L   W   L   +  I        + ++ 
Sbjct: 93  GLILDIFAQRARSHEGKLQVELAQLRHIASRLVRGWSH-LERQKGGIGLRGPGETQLEMD 151

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                  +  +      +    +QG+     +    + ++G++NAGKS+LFNAL    + 
Sbjct: 152 RRMLGTRIKQLERKLEKVRRQRAQGRQARRRQEFPVVSLVGYTNAGKSTLFNALTGSGL- 210

Query: 246 IVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
              D    T D     L+L +G  V ++DT G             + T  EV  +DL+L 
Sbjct: 211 YADDRLFATLDTTLRRLELPDGQPVILADTVGFISDLPHGLVAAFRSTLEEVGESDLLLH 270

Query: 305 LKEINSKKEISFPKN------------IDFIFIGTKSD--------LYSTYTEEYDHLIS 344
           + +          +             +  + +  K+D        L           +S
Sbjct: 271 VVDAADPDRREHARQVQQVLADIGASEVPVLTVYNKADLCQHPVGILRDDREAPEAVWVS 330

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           +  G GL+EL   +   L     +    +P+H+  L  
Sbjct: 331 AAAGRGLDELEEAVAECLGGGRVRGRVRLPAHQGRLRA 368


>gi|329850745|ref|ZP_08265590.1| GTP-binding protein Era [Asticcacaulis biprosthecum C19]
 gi|328841060|gb|EGF90631.1| GTP-binding protein Era [Asticcacaulis biprosthecum C19]
          Length = 317

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 39/186 (20%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  NAGKS+L N L    V+IVT    TTR  +      E   + + DT G
Sbjct: 7   RCGF-VAIIGAPNAGKSTLVNQLVGTKVSIVTQKVQTTRFPVRGIALDEEVQMILVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-------------------------- 310
           I +    +++  +   +   E+AD ++LL +  +                          
Sbjct: 66  IFKPRRRLDRAMVASAWGGAEDADCVVLLVDAAAQLAVKGGGEVKATGADHKAVEDVEMI 125

Query: 311 --------KKEISFPKNIDFIFIGT----KSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
                   +K I     ID +          DLY+T   E   +IS+  G G+++L   +
Sbjct: 126 VEGLKSANRKAILALNKIDLMKSENLLAIADDLYNTGIVEDVLMISAEKGHGVKDLKKLL 185

Query: 359 KSILSN 364
              +  
Sbjct: 186 AKRMPQ 191


>gi|258654106|ref|YP_003203262.1| GTP-binding proten HflX [Nakamurella multipartita DSM 44233]
 gi|258557331|gb|ACV80273.1| GTP-binding proten HflX [Nakamurella multipartita DSM 44233]
          Length = 487

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 76/204 (37%), Gaps = 27/204 (13%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK----DVAIVTDIPGTTR 255
             D+       +          + I G++NAGKSSL N L       + A+   +  TTR
Sbjct: 247 LKDMRRVRDTKRSQRRANAVPAVSIAGYTNAGKSSLLNRLTDAGVLVEDALFATLDPTTR 306

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              T     +G +  ++DT G          E  + T  E+ +ADL+L + + + +   +
Sbjct: 307 RSRTT----DGRVYTLTDTVGFVRHLPHQLVESFRSTLEEIGDADLLLHVVDGSDENPEA 362

Query: 316 FPKNIDFIF------------IGTKSDLYSTYT-------EEYDHLISSFTGEGLEELIN 356
               +  +             +  K D     T             +S+ TG G++EL +
Sbjct: 363 QVSAVREVLGEIDALSVAEIIVVNKIDAADEMTLTRLRHVLPGAVFVSARTGAGIDELRD 422

Query: 357 KIKSILSNKFKKLPFSIPSHKRHL 380
           +I + L +    +   +P  +  L
Sbjct: 423 RIAAALPDPAVAVNVLMPFSEGAL 446


>gi|170760642|ref|YP_001788927.1| GTP-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169407631|gb|ACA56042.1| GTP-binding protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 397

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 10/153 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I  +G +N+GKSSL NA+  +D++IV+ I GTT D ++  ++ +    V  +DTAG
Sbjct: 8   NRIHITFIGKTNSGKSSLMNAIIGQDISIVSSIEGTTTDPVSKAMEFIPLGPVLFTDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           + +   +  K  I++T   +   D  + +          + K        NI +I +  K
Sbjct: 68  LEDNTKLG-KMRIEKTLNTLLRTDFAVYVMSAEDIDINLYEKTINKFKKQNISYITVINK 126

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            D+      +    I   T       IN I ++
Sbjct: 127 MDIIEKNKIDNIKKIIEDTIFVSSNDINSILNL 159


>gi|168211868|ref|ZP_02637493.1| GTP-binding protein [Clostridium perfringens B str. ATCC 3626]
 gi|170710198|gb|EDT22380.1| GTP-binding protein [Clostridium perfringens B str. ATCC 3626]
          Length = 440

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 22/140 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L     V   DTAG  
Sbjct: 13  IHISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFVDTAGFD 72

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---------------KKEISFPK----- 318
           +  +I  K  +++T   V   D+ L+   ++                 KEI +       
Sbjct: 73  DEGEIG-KLRVEKTEEVVGKTDVALITLSLSEILEAIKSNIEFKDMLSKEILWLNKLKKA 131

Query: 319 NIDFIFIGTKSDLYSTYTEE 338
               I +  K DL      E
Sbjct: 132 KKPAILVINKCDLVPNNLIE 151


>gi|227504556|ref|ZP_03934605.1| GTP-binding protein Era [Corynebacterium striatum ATCC 6940]
 gi|227198876|gb|EEI78924.1| GTP-binding protein Era [Corynebacterium striatum ATCC 6940]
          Length = 329

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 76/212 (35%), Gaps = 28/212 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  + P TTR  +   +  E   V + D
Sbjct: 29  EGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITANQPETTRHPIRGLVHREDAQVIVVD 87

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFI 323
           T G+     ++ +   +       + D+I L    + K                     I
Sbjct: 88  TPGLHRPRTLLGERLNEMVKDTYADVDVIGLTIPADEKIGPGDRWILENVRKVAPKTPII 147

Query: 324 FIGTKSD-----------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            I TK D                 L     +     +S+     L+EL   I   L    
Sbjct: 148 GIVTKLDKASKDQVGAQLLALHELLSEDNPDAVVIPVSATQRVQLDELTQVIVDHLPEGP 207

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           K  P    + +     +S+ +R   +A L ++
Sbjct: 208 KFYPDDHITDEEQEKRISELIREAALAGLKDE 239


>gi|254819385|ref|ZP_05224386.1| GTP-binding protein Era [Mycobacterium intracellulare ATCC 13950]
          Length = 299

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 86/239 (35%), Gaps = 34/239 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    VAI +  P TTR  +   +  + + + + DT G
Sbjct: 5   RSGF-VCLVGRPNTGKSTLTNALVGTKVAITSKRPQTTRHTIRGIVHRDDFQIILVDTPG 63

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           +     ++ K             D+I L    +           ++  +       + I 
Sbjct: 64  LHRPRTLLGKRLNDLVRDTYAEVDVIGLCIPADEAIGPGDRWIVEQIRATAPKATLVAIV 123

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D                    +     +S+  G  ++ LI+ + + L       P  
Sbjct: 124 TKIDKAPKDRVAAQLVAVSALVGEQAEIVPVSAVAGTQMDVLIDVLAAALPPGPAYYPDG 183

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
             + +     +++ +R   +  + + +    +           + ++    D + L+D+
Sbjct: 184 ELTDEPEEVLMAELIREAALEGVRD-ELPHSLAVV--------IDEVNPREDRDDLIDV 233


>gi|227488719|ref|ZP_03919035.1| HflX family GTP-binding protein [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227091141|gb|EEI26453.1| HflX family GTP-binding protein [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 505

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 28/219 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + + +++  L+ +++S      +  + R G    KI I G++N+GKSSL NAL   
Sbjct: 245 EADRRRLRSEMAKLRKELASMKKARDVKAMRRRGSTIPKIAIAGYTNSGKSSLINALTGA 304

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +V D    T D  T    L +G  +  SDT G          E  + T  EV  ADL
Sbjct: 305 GV-LVEDALFATLDPTTRRAQLVDGRSIIFSDTVGFVRHLPTQLVEAFRSTLEEVLGADL 363

Query: 302 ILLLKEINSK---KEISFPKNIDFIFIG-------------TKSDLYS-------TYTEE 338
           IL + + +     K+I   + +    +               K D           +  +
Sbjct: 364 ILHVVDGSDPFPLKQIEAVRGVILDIVREEGVEAPPEIIVVNKIDQADPLVLAELRHALD 423

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
               +S+ TGEG+ EL ++I+  L+     +   IP  +
Sbjct: 424 DVAFVSARTGEGIAELESRIELFLNTLDSHVTLHIPFSR 462


>gi|261337358|ref|ZP_05965242.1| GTP-binding protein Era [Bifidobacterium gallicum DSM 20093]
 gi|270277736|gb|EFA23590.1| GTP-binding protein Era [Bifidobacterium gallicum DSM 20093]
          Length = 337

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 78/208 (37%), Gaps = 34/208 (16%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
            + R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L      + + D
Sbjct: 25  NVTRSGF-VAVVGRPNVGKSTLINALLGTQIAIASSRPETTRKAIRGILTTNDAQMVLVD 83

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------------------KKE 313
           T GI     ++ +         + + D I  L   +                     + +
Sbjct: 84  TPGIHRPRTLLGQRLNDIVDESLADCDAIAFLLPADQEIGPGDKRILSRLRAEFAHKRDD 143

Query: 314 ISFPKNIDFIFIGTKSD------LYSTYTEEYDH-------LISSFTGEGLEELINKIKS 360
            SF   +  I + TK D      L +   E  +         +S+   + +EE+ N +  
Sbjct: 144 GSFSWKVPLIGVLTKIDELDRGTLINKLIEINEFADFTDIVPVSALKDDNIEEVRNVLIE 203

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            L    +  P    + +R    +++ +R
Sbjct: 204 HLPEGPQMYPAEQITEERPEETIAELIR 231


>gi|224541302|ref|ZP_03681841.1| hypothetical protein CATMIT_00462 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525739|gb|EEF94844.1| hypothetical protein CATMIT_00462 [Catenibacterium mitsuokai DSM
           15897]
          Length = 401

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 93/259 (35%), Gaps = 17/259 (6%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          L        + ++H +          ++ ++        L+ 
Sbjct: 99  RAQTKEAKLQVEIARDQYLLPRLAGMQEHMSHQQGGSGFRGSGEKQIELDRRIISRKLSR 158

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA--KKDVAIVTDIPGT 253
                  I       +      N   I ++G++N+GKS+L N L   K+      D+   
Sbjct: 159 SRKELAQIVKQRQTQRERRKRNNVPVIALVGYTNSGKSTLLNTLCQNKEKKVFEKDMLFA 218

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----- 308
           T    T ++ ++ +   ++DT G  E       +  + T  EV+ ADL+L + +      
Sbjct: 219 TLQTSTRNIKIKNHTCLLTDTVGFIERLPHNLIQAFRSTLEEVKEADLLLHVVDSSFEDY 278

Query: 309 -------NSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHLISSFTGEGLEELINKI 358
                  N   E    +N   I++  K DL      +       IS+    GL+ L ++I
Sbjct: 279 QLQVDTTNKVLEELGVENTPMIYVYNKVDLNKYGYVHPVAPYVFISAKEKIGLDLLEDEI 338

Query: 359 KSILSNKFKKLPFSIPSHK 377
             IL   ++     IP  K
Sbjct: 339 SHILFKDYETFQLGIPYDK 357


>gi|330807232|ref|YP_004351694.1| GTP-binding protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375340|gb|AEA66690.1| GTP-binding protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 433

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 105/297 (35%), Gaps = 27/297 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN + + DV    D    T
Sbjct: 174 QIKGRLEKVRSQREQSRRGRKRADIPTVSLVGYTNAGKSTLFNNVTQSDV-YAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     LDL+    + ++DT G          E  + T  E  N+DL+L + +      
Sbjct: 233 LDPTLRRLDLDDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDAAEPDR 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +               +++  + +  K DL      +             +S+  G GL+
Sbjct: 293 MLQIEQVMVVLGEIGAQDLPILEVYNKLDLLEGVEPQIQRDADGKPQRVWLSARDGTGLD 352

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            L   +  +L N       ++   +R     +Q      +      D G+ ++A  L
Sbjct: 353 LLKQAVAELLGNDL--FVGTLKLPQRFARLRAQFFELGAVQKEEHDDEGVCLLAVRL 407


>gi|222100001|ref|YP_002534569.1| GTP-binding protein engB [Thermotoga neapolitana DSM 4359]
 gi|254783217|sp|B9K8C0|ENGB_THENN RecName: Full=Probable GTP-binding protein EngB
 gi|221572392|gb|ACM23204.1| GTP-binding protein engB [Thermotoga neapolitana DSM 4359]
          Length = 195

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 26/170 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-------DVLTIDLDLEGYLV-KISD 273
           +  +G SN GKSSL NAL  + +A V+  PG TR       +     +DL GY   K+S 
Sbjct: 26  VAFVGRSNVGKSSLLNALFNRKIAYVSKTPGKTRSINFYLVNSRYYFVDLPGYGYAKVSK 85

Query: 274 TAGIRET----DDIVEKEGIKRTFLEVE------NADL--ILLLKEINSKKEISFPKNID 321
              ++      D    +  ++  FL V+        DL  +  LK +N    I   K   
Sbjct: 86  KERVQWKKLVEDYFTNRWSLQMVFLLVDGRIPPQETDLMMVEWLKSLNVPFTIVLTKMDK 145

Query: 322 FIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                 K  L      +S Y E      SS TGEG+++L+N I ++L   
Sbjct: 146 VKMSERKKKLDEHKKAFSKYGEYTIIPTSSVTGEGIDDLLNLISTLLKEN 195


>gi|297199566|ref|ZP_06916963.1| GTP-binding protein Era [Streptomyces sviceus ATCC 29083]
 gi|197713506|gb|EDY57540.1| GTP-binding protein Era [Streptomyces sviceus ATCC 29083]
          Length = 322

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 10/129 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+    +G  NAGKS+L NAL    VAI  + P TTR  +   +  E   + + DT G
Sbjct: 22  RAGF-ACFVGRPNAGKSTLTNALVGHKVAITANQPQTTRHTVRGIVHREDAQLILVDTPG 80

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++ +             D+I      N K         KE++  K    + I T
Sbjct: 81  LHKPRTLLGERLNDVVRTTWAEVDVIGFCLPANEKLGPGDRFIAKELAGIKKSPKVAIIT 140

Query: 328 KSDLYSTYT 336
           K+DL  + T
Sbjct: 141 KTDLVDSKT 149


>gi|168213397|ref|ZP_02639022.1| GTP-binding protein [Clostridium perfringens CPE str. F4969]
 gi|170715179|gb|EDT27361.1| GTP-binding protein [Clostridium perfringens CPE str. F4969]
          Length = 440

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 22/140 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L     V   DTAG  
Sbjct: 13  IHISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFVDTAGFD 72

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---------------KKEISFPK----- 318
           +  +I  K  +++T   V   D+ L+   ++                 KEI +       
Sbjct: 73  DEGEIG-KLRVEKTEEVVGKTDVALITLSLSEILEAIKSNIEFKDMLSKEILWLNKLKKA 131

Query: 319 NIDFIFIGTKSDLYSTYTEE 338
               I +  K DL      E
Sbjct: 132 KKPAILVINKCDLVPNKLIE 151


>gi|315127396|ref|YP_004069399.1| GTP-binding protein Era [Pseudoalteromonas sp. SM9913]
 gi|315015910|gb|ADT69248.1| GTP-binding protein Era [Pseudoalteromonas sp. SM9913]
          Length = 310

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 73/204 (35%), Gaps = 22/204 (10%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           + Q   GEI      + I+G  N GKS+L N + ++ V+I +  P TTR  +        
Sbjct: 6   LIQPHEGEIDTFCGMVAIVGRPNVGKSTLLNEIIEQKVSITSRKPQTTRHRIMGIHTEGK 65

Query: 267 YLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK---- 318
           +     DT G+  E    + +   +     + + +LI+ + E    N+  ++   K    
Sbjct: 66  HQAVYVDTPGLHVEEKRAINRLMNRAASSSIGDVELIIFVVEGTHWNADDDMVLNKVSQS 125

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSN 364
               + +  K D          H+               S+  G+ +  +  ++   L  
Sbjct: 126 GKPVLLVINKIDQVKDRDLVLPHMKFLGDKFDFVGIMPVSATQGKNINLIKEEVTKRLPP 185

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVR 388
                P    + +   +  ++ +R
Sbjct: 186 CEFYFPDDYVTDRSMRFMAAEVIR 209


>gi|255322165|ref|ZP_05363311.1| GTP-binding protein Era [Campylobacter showae RM3277]
 gi|255300538|gb|EET79809.1| GTP-binding protein Era [Campylobacter showae RM3277]
          Length = 289

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 77/187 (41%), Gaps = 22/187 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+   I+G +NAGKSSL N L    + IV+     TR  ++  +  +   +  +DT 
Sbjct: 1   MKSGF-ASIIGRTNAGKSSLLNFLLDAKITIVSHKQNATRRKISGIVMNDEDQIVFTDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSD 330
           G+ E++  + K  I      + + D I+ L  I+   +     ++       I + TK D
Sbjct: 60  GLHESNKTLNKLMINEAIKSMGDCDAIVFLAPIHDGIDDYVKFLNLNPQKPHILVLTKVD 119

Query: 331 LYSTYT--EEYDHL------------ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIP 374
             S     E+                 S       + L+++I  +L     F    F  P
Sbjct: 120 EVSNAKVLEKIAQYQKFQDKFTALLPFSVKKQTYKKPLLDEICKLLPEHEYFYDPEFLTP 179

Query: 375 SHKRHLY 381
           +++R ++
Sbjct: 180 TNEREIF 186


>gi|149910154|ref|ZP_01898800.1| GTP-binding protein-like protein; GTPase [Moritella sp. PE36]
 gi|149806740|gb|EDM66704.1| GTP-binding protein-like protein; GTPase [Moritella sp. PE36]
          Length = 303

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 63/196 (32%), Gaps = 33/196 (16%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N +  + V+I +  P TTR  +      +       DT G+    
Sbjct: 10  IAIVGRPNVGKSTLLNRILGQKVSITSRKPQTTRHRILGIDTEDNRQTVYIDTPGL---- 65

Query: 282 DIVEKEGIKRTFLEVENA-------DLILLLKEI---NSKKEISFPK----NIDFIFIGT 327
            I EK  I R      ++       D ++ + +        E+   K    N        
Sbjct: 66  HIDEKRAINRLMNRAASSSLKDMNVDAVIFVVDGTRWTDDDEMVLNKLRDINCPIYLAIN 125

Query: 328 KSDLYSTYTEEY---------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           K+D       E                   IS+  G  +E L       L       P  
Sbjct: 126 KTDAIKDKDRELMPHLQVLAAKFKFTEIIPISATKGTNVEMLRGICSKQLQEGDFYFPED 185

Query: 373 IPSHKRHLYHLSQTVR 388
             + +   +  S+ +R
Sbjct: 186 YVTDRSSRFMASEIIR 201


>gi|78047325|ref|YP_363500.1| GTP-binding protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|294665636|ref|ZP_06730913.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|78035755|emb|CAJ23446.1| GTP-binding protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|292604582|gb|EFF47956.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 439

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 96/288 (33%), Gaps = 29/288 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W          I        + +      ++ +  +      +   
Sbjct: 126 LAQLRHMATRLVRGWTHLERQRGGSIGLRGPGETQLETDRRLLQKRVEQLQQRLEKVEVQ 185

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +   +     +I ++G++NAGKS+LFN L   + A V D    T D     + L G
Sbjct: 186 RTQMRRARMRSELPRIALVGYTNAGKSTLFNVLTGAE-AYVADQLFATLDPTVRRIALPG 244

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEI 314
               ++DT G             + T  E  +ADL+L + +            ++   + 
Sbjct: 245 GSAILADTVGFVRDLPHELVAAFRSTLSEARDADLLLHVVDAADPLREERILQVDEVLQA 304

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSI 361
               ++  + +  K D        +D               +S+  G GLEEL + +   
Sbjct: 305 VGAGDLPQLLVFNKIDKIEGAEVRHDAQDGIPDPARRERVWVSARDGRGLEELQHALGQR 364

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           L  +       +P        L   +  LE+    + D    ++  +L
Sbjct: 365 LDLRHLTGQLRLPP---SAGRLRSRLHQLEVVRNEQSDEEGWLLEVDL 409


>gi|187777431|ref|ZP_02993904.1| hypothetical protein CLOSPO_00998 [Clostridium sporogenes ATCC
           15579]
 gi|187774359|gb|EDU38161.1| hypothetical protein CLOSPO_00998 [Clostridium sporogenes ATCC
           15579]
          Length = 397

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 14/171 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           N   I  +G +N+GKSSL NA+  +D++IV+ I GTT D ++  ++L     V  +DTAG
Sbjct: 8   NRIHITFIGKTNSGKSSLMNAIIGQDISIVSSIEGTTTDPVSKAMELIPLGPVLFTDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           + +  ++  K  I++T   +   D  + +          + K        NI +I +  K
Sbjct: 68  LEDNTELG-KIRIEKTLNTLLKTDFAVYVMSAEDIDINLYEKSINRFKQQNIPYITVVNK 126

Query: 329 SDLYSTYT----EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D     T    ++        + + +  ++N   SI+ N  K        
Sbjct: 127 IDTVDKNTINGLKKIIENPIFVSSDDINSILNLKDSIIKNLSKAKENDTIM 177


>gi|160941960|ref|ZP_02089283.1| hypothetical protein CLOBOL_06852 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435124|gb|EDP12891.1| hypothetical protein CLOBOL_06852 [Clostridium bolteae ATCC
           BAA-613]
          Length = 426

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 102/294 (34%), Gaps = 38/294 (12%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +      L G   + L+ +   I       ++ +       + +  +     D+  H
Sbjct: 130 LAQLKYRAVRLVG-MRNSLSRLGGGIGTRGPGEKKLETDRRLIHQRIGQLKEELADVKRH 188

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-E 265
               +            I+G++NAGKS+L N L    + +  D    T D  T    L +
Sbjct: 189 REVTRQQREKNFALSAAIVGYTNAGKSTLLNRLTGAGI-LAEDKLFATLDPTTRSYTLED 247

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------E 313
           G  + ++DT G          E  K T  E   +D++L + + ++ +            E
Sbjct: 248 GQQILLTDTVGFIRKLPHHLIEAFKSTLEEARYSDIVLHVVDCSNPQMDMQMHVVKETLE 307

Query: 314 ISFPKNIDFIFIGTKSD---------------LYSTYTEEYDHLISSFTGEGLEELINKI 358
                +   + +  K D               +   ++ +Y   IS+ TGEGLEEL   +
Sbjct: 308 ELEIVDKTIVTVFNKVDRFRELEAGENSGVMQIPRDFSSDYQVRISARTGEGLEELQKVL 367

Query: 359 KSILSNKFKKLPFSIPSHK-------RHLYHLSQTVRYLEMASLNEKDCGLDII 405
           ++I+ ++   L    P  +       R    L +   Y E     +     ++ 
Sbjct: 368 QAIIRSRRILLEKVFPYSQAGRIQTIRKYGQLLE-EEYQEDGIAVKAYVPAELF 420


>gi|86739978|ref|YP_480378.1| GTP-binding protein Era [Frankia sp. CcI3]
 gi|86566840|gb|ABD10649.1| GTP-binding protein Era [Frankia sp. CcI3]
          Length = 307

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 11/124 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   ++G  NAGKS+L NAL    VAI +  P TTR  +   +  +   + + DT G
Sbjct: 10  RAGF-ACLVGRPNAGKSTLTNALVGTKVAITSGRPQTTRHAIRGIVHRDDAQLVLVDTPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-FPKNIDFIFIG 326
           +     ++ +         +   D++      +           +E+S  PK    + I 
Sbjct: 69  LHRPRTLLGQRLNDVVRATLSEVDVVGFCMPADEPVGRGDRFIAEELSRLPKRTPVVAIL 128

Query: 327 TKSD 330
           TK+D
Sbjct: 129 TKTD 132


>gi|260598949|ref|YP_003211520.1| GTPase Era [Cronobacter turicensis z3032]
 gi|260218126|emb|CBA32923.1| GTP-binding protein era homolog [Cronobacter turicensis z3032]
          Length = 301

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAINKVDNVQ 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   HL               S+ TG  ++ + + ++  L       P    + +  
Sbjct: 131 DKAELLPHLQFLGSQMNFLDIVPLSAETGMNVDTIASIVRKHLPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|227542284|ref|ZP_03972333.1| HflX family GTP-binding protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181945|gb|EEI62917.1| HflX family GTP-binding protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 505

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 28/219 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + + +++  L+ +++S      +  + R G    KI I G++N+GKSSL NAL   
Sbjct: 245 EADRRRLRSEMAKLRKELASMKKARDVKAMRRRGSTIPKIAIAGYTNSGKSSLINALTGA 304

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +V D    T D  T    L +G  +  SDT G          E  + T  EV  ADL
Sbjct: 305 GV-LVEDALFATLDPTTRRAQLVDGRSIIFSDTVGFVRHLPTQLVEAFRSTLEEVLGADL 363

Query: 302 ILLLKEINSK---KEISFPKNIDFIFIG-------------TKSDLYS-------TYTEE 338
           IL + + +     K+I   + +    +               K D           +  +
Sbjct: 364 ILHVVDGSDPFPLKQIEAVRGVILDIVREEGVEAPPEIIVVNKIDQADPLVLAELRHALD 423

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
               +S+ TGEG+ EL ++I+  L+     +   IP  +
Sbjct: 424 DVAFVSARTGEGIAELESRIELFLNTLDSHVTLHIPFSR 462


>gi|126726836|ref|ZP_01742675.1| Putative GTP-binding protein [Rhodobacterales bacterium HTCC2150]
 gi|126703794|gb|EBA02888.1| Putative GTP-binding protein [Rhodobacterales bacterium HTCC2150]
          Length = 390

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 28/222 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDV 244
             + +   I+ ++  +   +   +L    R       + ++G++NAGKS+ FN L    V
Sbjct: 135 DRRALDEAIIRIRRQLEKTVKTRELHRAARKKVPYPVVALVGYTNAGKSTFFNHLTGAKV 194

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D+   T D     ++L  G  V +SDT G             + T  +  +ADLIL
Sbjct: 195 -FAKDMLFATLDPTMRAVNLPNGLDVILSDTVGFISDLPTELVAAFRATLEDALSADLIL 253

Query: 304 LLKEINSKKEISFPKNIDFIF-------------IGTKSDLYSTYT----------EEYD 340
            +++I   +  S   N+  I              I  K+DL +             +E  
Sbjct: 254 HVRDIAHPETESQAGNVRTILSSLGIGHETPQIEIWNKTDLLNEEDAGRVAALAERKEDV 313

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
             +SS TG+G+E L+  IK+ L ++      S+P        
Sbjct: 314 FGVSSITGDGMEVLLAAIKAKLDDERSTDILSLPFSAGQKRA 355


>gi|126659601|ref|ZP_01730732.1| ferrous iron transport protein B [Cyanothece sp. CCY0110]
 gi|126619144|gb|EAZ89882.1| ferrous iron transport protein B [Cyanothece sp. CCY0110]
          Length = 668

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 4/166 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKS+LFN +     A V + PG T D+L  +++L G  V+  D  GI + 
Sbjct: 20  RVSVMGMPNVGKSTLFNQITGAS-AFVGNWPGVTVDLLEAEVELNGKTVEFVDLPGIYDL 78

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +   E E + + F E    +L+L++       ++I     +  + I     L     +E 
Sbjct: 79  EGYSEDERVVQGFFERFPINLVLVVLNAGQIDRQIRLALQVKALGIPG--MLILNMADEA 136

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           +H       E LEE +     ++S K+ +          H+   SQ
Sbjct: 137 EHFNIKINAEKLEEKLGMPVVLVSAKYNRGIIQAKHRISHVLSQSQ 182


>gi|184200941|ref|YP_001855148.1| GTP-binding protein Era [Kocuria rhizophila DC2201]
 gi|183581171|dbj|BAG29642.1| GTP-binding protein Era [Kocuria rhizophila DC2201]
          Length = 348

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
            +  +  R G+ +  +G  N GKS+L NAL  + VAI ++ P TTR  +   +      +
Sbjct: 6   SEHAQDFRAGFAV-FVGRPNVGKSTLTNALVGRKVAITSNRPQTTRHTIRGIVHRPDGQL 64

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKN 319
            + DT G+     ++ +         +   D+I      + K          + ++    
Sbjct: 65  ILVDTPGLHRPRTLLGQRLNDVVAETLGEVDVIGFCVPADQKVGPGDRYIAQQVVAAVGR 124

Query: 320 IDFIFIGTKSDLYST 334
              + I TK+DL   
Sbjct: 125 TPVVAIVTKADLVPQ 139


>gi|300856554|ref|YP_003781538.1| putative GTP-binding protein [Clostridium ljungdahlii DSM 13528]
 gi|300436669|gb|ADK16436.1| putative GTP-binding protein [Clostridium ljungdahlii DSM 13528]
          Length = 595

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 32/223 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALA------ 240
             + +   I  +  ++       K     R+   K+ ++G++N+GKS+L N L       
Sbjct: 329 DRRHIREKIYEISKELKKIKQVRKTQRKKRDEINKVSLVGYTNSGKSTLRNKLCEVAVTR 388

Query: 241 ---KKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
               K+     D+   T D  T  ++L +G  + ++DT G  +       E  K T  EV
Sbjct: 389 ENVNKEKVFEADMLFATLDTTTRAVELEDGRTIAVTDTVGFIKKLPHDLVEAFKSTLEEV 448

Query: 297 ENADLILLLKEINS---KKEISF---------PKNIDFIFIGTKSD---------LYSTY 335
           + ADL+L + + +S   +++I             +   + +  K D         +   Y
Sbjct: 449 QYADLLLHVVDASSDYAEEQIDAVNEVLSELDVNDKPVLIVLNKIDKLEDTKLSGIKDRY 508

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                  IS+  G  L+EL+ ++  +L +  KK  + IP  ++
Sbjct: 509 KNSNAIFISAKYGTNLDELLKRVLEMLPHNIKKAEYLIPYTEQ 551


>gi|297191639|ref|ZP_06909037.1| ATP/GTP-binding protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721574|gb|EDY65482.1| ATP/GTP-binding protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 496

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 92/267 (34%), Gaps = 26/267 (9%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS--EEEDVQNFSSKEV 192
            +++     ++++  M   +      W   L+            +    E       + +
Sbjct: 186 HAKSREGKAQVALAQMQ-YMLPRLRGWGQSLSRQMGGGGGGGMATRGPGETKIETDRRRI 244

Query: 193 LNDILFLKNDISSHI--SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTD 249
              +  ++ +I+      + K  E  RN    + I G++NAGKSSL N L    V +   
Sbjct: 245 REKMAKMRREIAEMKTGREIKRQERRRNRVPSVAIAGYTNAGKSSLLNRLTGAGVLVENA 304

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  T    +       G    ++DT G          E  + T  EV ++DLIL + + +
Sbjct: 305 LFATLDPTVRRAETPSGRGYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGS 364

Query: 310 SKKEISFPK------------NIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGEG 350
                                ++  I +  K+D             E +   +S+ TG G
Sbjct: 365 HPAPEEQLAAVREVIRDVGAVDVPEIVVINKADAADPLVLQRLLRIERHAIAVSARTGAG 424

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHK 377
           + EL+  I   L     ++   +P  +
Sbjct: 425 MAELVQLIDDELPRPQIEIEALVPYTE 451


>gi|270308053|ref|YP_003330111.1| GTP-binding protein [Dehalococcoides sp. VS]
 gi|270153945|gb|ACZ61783.1| GTP-binding protein [Dehalococcoides sp. VS]
          Length = 403

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 101/259 (38%), Gaps = 34/259 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E Q ++ +  M   L  L GQW   L  +   I        + +      +  + 
Sbjct: 126 HANTREGQLQVELAQMQYLLPRLAGQWSH-LERLGGGIGTRGPGESQLETDKRIIRTKIR 184

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +    +++++H    +    +R    + ++G++N+GKSSL NA+AK DV +  +    T
Sbjct: 185 SLQDHLDEVTTHRDLYRERRRMRGVPVVSLVGYTNSGKSSLLNAVAKTDV-LAENKLFAT 243

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D  T  L + G   V ++DT G          +  + T  E+  ADL++ + +I +K  
Sbjct: 244 LDPTTRRLYINGLGNVLLTDTVGFIRKLPPAIVKAFRATLEEINQADLLVHVVDITAKNA 303

Query: 314 ISFPK------------NIDFIFIGTKSDLY----STYTE--------------EYDHLI 343
           +   +            +   + +  K DL       +TE              E   LI
Sbjct: 304 VEQCQTVEKILADMGVADKPRLTVMNKIDLKLDGGRNWTEDEALNLLKAECPVAENTVLI 363

Query: 344 SSFTGEGLEELINKIKSIL 362
           S+    GL E    +K  L
Sbjct: 364 SAAKRWGLMEFTRMLKEKL 382


>gi|315654892|ref|ZP_07907797.1| GTP-binding protein Era [Mobiluncus curtisii ATCC 51333]
 gi|315490853|gb|EFU80473.1| GTP-binding protein Era [Mobiluncus curtisii ATCC 51333]
          Length = 350

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 81/223 (36%), Gaps = 25/223 (11%)

Query: 201 NDISSHISQGKLGEIIRNGYKIV---ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           ++ S   + G        G++     ++G  N GKS+L NA+  + +AI +D P TTR V
Sbjct: 35  DETSDLAASGLFTRDWPEGFRAGFAAVIGRPNVGKSTLINAMVGRKIAITSDRPETTRRV 94

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------ 311
               +    + + + DT GI     ++ +             D+ +     +        
Sbjct: 95  ARGIVHRPDFQLILVDTPGIHRPRTLLGQRLNDMVDDAFSEVDVAVFCVPADQPIGPGDR 154

Query: 312 ---KEISFPKNIDFIFIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELI 355
              +      +   I + TK+D  S              +       IS+  G  ++ L+
Sbjct: 155 RIVETQLKTAHFPAIAVVTKTDAASREQIAEQLLAVSQLHDFAEIVPISAHQGTQVQTLV 214

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           + +   L       P    + +     +S+ +R   + SL+++
Sbjct: 215 DLLGQRLPLSPPLYPRDQVTDEDDTAMISELIREAALESLSQE 257


>gi|296117721|ref|ZP_06836305.1| GTP-binding protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295969452|gb|EFG82693.1| GTP-binding protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 525

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 30/224 (13%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + + +++  L+ ++    +   +    R      +I I G++NAGKSSL NAL    V
Sbjct: 243 DRRRIRSEMSRLRKELKGMQTARDVKRAGRQRSTVPQIAIAGYTNAGKSSLINALTGAGV 302

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D  T   +L +G  V ++DT G          E  K T  EV NADL+L
Sbjct: 303 -LVEDALFATLDPTTRKAELGDGRHVVLTDTVGFVRHLPTQLVEAFKSTLEEVFNADLML 361

Query: 304 LLKEINSK---KEISFPKN-------------IDFIFIGTKSDLYSTYT---------EE 338
            + +       K+I                     I +  K D                E
Sbjct: 362 HVVDGADPFPLKQIEAVNKVIYDIAKETGETPPPEIIVVNKIDAADDLALAEIRHVLDRE 421

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
               +S+ TGEG+ EL  +I+  L++    +   +P  +  +  
Sbjct: 422 NVVYVSAATGEGISELTTRIELFLNSLDSHVQLLVPFTRGDVIA 465


>gi|253701232|ref|YP_003022421.1| ferrous iron transporter B [Geobacter sp. M21]
 gi|251776082|gb|ACT18663.1| ferrous iron transport protein B [Geobacter sp. M21]
          Length = 663

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GKS LFNAL    V  V++ PGT+ +V      + G   +I DT G+   
Sbjct: 23  KVALVGNPNVGKSVLFNALTGAYVT-VSNYPGTSVEVSRGSTAINGEEFEIIDTPGMYSI 81

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYST 334
             I E+E + R  L  E   L+L + +  + + +           +  + +    D  + 
Sbjct: 82  LPITEEERVAREILLTERPHLVLHVLDARNLERMLPMTLQLIEAELPVVLVVNIMDEAAR 141

Query: 335 YTEEYDH 341
              E D 
Sbjct: 142 MGLEIDI 148


>gi|315646583|ref|ZP_07899701.1| GTP-binding proten HflX [Paenibacillus vortex V453]
 gi|315278226|gb|EFU41546.1| GTP-binding proten HflX [Paenibacillus vortex V453]
          Length = 429

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 87/223 (39%), Gaps = 20/223 (8%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ + + I        + +      ++ ++D+    ++++ H S  +         ++
Sbjct: 151 KNLSRLGAGIGTRGPGESKLETDRRHIRDRISDLKRQLDEMTRHRSLHRERRKKSGAVQV 210

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+L N L   DV I  D    T D  +  L+L  G  V ++DT G  +  
Sbjct: 211 ALVGYTNAGKSTLLNRLTAADVYI-EDQLFATLDPTSRALELPSGKEVVLTDTVGFIQNL 269

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGTKS 329
                   + T  E   ADLIL + + +S                    +   I +  K 
Sbjct: 270 PHDLVAAFRATLEEANEADLILHVVDSSSPMRDEQMAVVHSILQDLGAADKPQIVLFNKK 329

Query: 330 D------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
           D      L    T E    IS++  + L+ +   I++ LS   
Sbjct: 330 DACEPEQLEMLPTGEGQLKISAYNDQDLDTVREAIQNQLSGGN 372


>gi|222099617|ref|YP_002534185.1| Iron(II) transport protein B [Thermotoga neapolitana DSM 4359]
 gi|221572007|gb|ACM22819.1| Iron(II) transport protein B [Thermotoga neapolitana DSM 4359]
          Length = 665

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 19/159 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ + G  N GK+SLFNAL       V + PG T +         GY + + D  G   
Sbjct: 13  VKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGSFTHRGYRINLVDLPGTYS 71

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE-INSKKEI-----SFPKNIDFIFIGTKSDLYS 333
                  E I R ++   +ADL++++ + +N ++ +             I + T  D   
Sbjct: 72  LGYSSIDEKIARDYILKGDADLVVVVADSVNPEQSLYLLLEILEMEKKVILVLTAIDEAR 131

Query: 334 TYTEEYDHL------------ISSFTGEGLEELINKIKS 360
               + D               S+ TGEG+E+L ++I  
Sbjct: 132 KLGIKIDRYELQKHLGVPVVFTSAVTGEGIEKLKDRIVE 170


>gi|114570120|ref|YP_756800.1| GTP-binding protein Era [Maricaulis maris MCS10]
 gi|122315961|sp|Q0APC5|ERA_MARMM RecName: Full=GTPase Era
 gi|114340582|gb|ABI65862.1| GTP-binding protein Era [Maricaulis maris MCS10]
          Length = 314

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 74/217 (34%), Gaps = 36/217 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   ++G  NAGKS+L NAL  + V IVT    TTR  +          + + DT G
Sbjct: 7   RCGF-AAVIGSPNAGKSTLVNALVGEKVTIVTHKVQTTRFAVRGVALAGETQIVLVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-------------------- 316
           +      ++K  +   +     AD I+ + +  ++  +                      
Sbjct: 66  VFAPKTRLDKSMVAAAWSGAGEADTIMHVVDAGARARMEHGGAKSGDSRMVEDDDRVTEG 125

Query: 317 --PKNIDFIFIGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
                   I +  K D             LY T       +IS+ TG G+ +L   I  +
Sbjct: 126 LKKTEQKAILVLNKVDLMPRDQLLAMSQELYETGVYSEVFMISAKTGSGVPQLREFIAGL 185

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           +       P    +        ++  R      L+E+
Sbjct: 186 MPEGVWHYPADQVADLPARILAAEITREKVYLRLHEE 222


>gi|302383080|ref|YP_003818903.1| GTP-binding protein Era [Brevundimonas subvibrioides ATCC 15264]
 gi|302193708|gb|ADL01280.1| GTP-binding protein Era [Brevundimonas subvibrioides ATCC 15264]
          Length = 315

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 36/191 (18%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+   I+G  NAGKS+L N L    V+IVT    TTR  +          + + DT G
Sbjct: 8   RAGF-AAIIGAPNAGKSTLVNRLTGSKVSIVTQKVQTTRFPVRGIAMEGESQIVLVDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI--------------------NSKKEISF 316
           I      +++  +   +   ++AD+++ L +                     +++  I+ 
Sbjct: 67  IFTPRRRLDRAMVASAWGGAQDADVVVHLIDAASHIASAGKEGEAADRRSAEDTETIIAN 126

Query: 317 PK--NIDFIFIGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            K  N   I    K D             L+ T      ++IS+ +G+G+++L  ++   
Sbjct: 127 LKASNTQVILALNKIDGMRRDTLLALSHALFETGVYSEVYMISALSGDGVDDLKQRLALS 186

Query: 362 LSNKFKKLPFS 372
           +       P  
Sbjct: 187 MPEGHWLYPED 197


>gi|163749348|ref|ZP_02156597.1| GTP-binding protein HflX [Shewanella benthica KT99]
 gi|161331067|gb|EDQ01993.1| GTP-binding protein HflX [Shewanella benthica KT99]
          Length = 430

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 107/299 (35%), Gaps = 26/299 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 114 RARTYEGKLQVELAQLRHMSTRLIRGWTH-LERQKGGIGMRGPGETQLETDRRLLRGRMS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     Q +          + ++G++NAGKS+LFN+L   +V    D    T
Sbjct: 173 TINKRLAKVDKQREQSRRARSRSEQPTVSLVGYTNAGKSTLFNSLTVSEV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
            D     L+L    + ++DT G             K T  E   ADL+L + + + +   
Sbjct: 232 LDPTLRKLELPDGAIILADTVGFIRHLPHDLVAAFKSTLQETREADLLLHIVDCHDENMG 291

Query: 312 ---KEISF------PKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEE 353
              +++           I  + +  K DL        D+          +S+   +GL++
Sbjct: 292 DNFEQVQLVLKEIGADEIPQLIVCNKIDLLEDVNPRIDYNDEGVPIRVWVSAQQQKGLDQ 351

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
           L   I  I+     +L   IP+   H  +L Q  R   +      D G  I++  L  A
Sbjct: 352 LREAINDIVGRATLELTLRIPATAGH--YLGQFYRLDAIQQKEFDDLGCCILSVRLLEA 408


>gi|148652187|ref|YP_001279280.1| GTP-binding protein Era [Psychrobacter sp. PRwf-1]
 gi|148571271|gb|ABQ93330.1| GTP-binding protein Era [Psychrobacter sp. PRwf-1]
          Length = 339

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 25/224 (11%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
               L E  R GY + I+G  N GKS+L N +  + ++I +  P TTR  +   L  E  
Sbjct: 29  DDNALPEDYRAGY-VAIVGRPNVGKSTLMNHMLGQKLSITSRKPQTTRHRIHGILSHEDM 87

Query: 268 LVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-------PKN 319
                DT GI   +  ++ +   K  F  + + DL+L + + +  +E            +
Sbjct: 88  QAVFVDTPGIHSNEVRLINERMNKAAFSALVDVDLVLFVVDGDQWREDDLLTLEKIGETD 147

Query: 320 IDFIFIGTKSD----------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNK 365
              + +  K+D          L  TY E +D      +S+   + LE L   I+S L   
Sbjct: 148 TPVVLVINKADTIKDKGSILPLIETYHENFDFADIVPVSALKNQNLERLQQVIRSHLPQG 207

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
                    + +   +  S+ +R   M    + +   D+ +  +
Sbjct: 208 APIYDTEQITDRSERFLASEIIREKIMRQSGD-EVPYDLTVQID 250


>gi|325927205|ref|ZP_08188466.1| GTP-binding proten HflX [Xanthomonas perforans 91-118]
 gi|325542433|gb|EGD13914.1| GTP-binding proten HflX [Xanthomonas perforans 91-118]
          Length = 413

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 96/288 (33%), Gaps = 29/288 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W          I        + +      ++ +  +      +   
Sbjct: 100 LAQLRHMATRLVRGWTHLERQRGGSIGLRGPGETQLETDRRLLQKRVEQLQQRLEKVEVQ 159

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +   +     +I ++G++NAGKS+LFN L   + A V D    T D     + L G
Sbjct: 160 RTQMRRARMRSELPRIALVGYTNAGKSTLFNVLTGAE-AYVADQLFATLDPTVRRIALPG 218

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEI 314
               ++DT G             + T  E  +ADL+L + +            ++   + 
Sbjct: 219 GSAILADTVGFVRDLPHELVAAFRSTLSEARDADLLLHVVDAADPLREERILQVDEVLQA 278

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSI 361
               ++  + +  K D        +D               +S+  G GLEEL + +   
Sbjct: 279 VGAGDLPQLLVFNKIDKIEGAEVRHDAQDGIPDPARRERVWVSARDGRGLEELQHALGQR 338

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           L  +       +P        L   +  LE+    + D    ++  +L
Sbjct: 339 LDLRHLTGQLRLPP---SAGRLRSRLHQLEVVRNEQSDEEGWLLEVDL 383


>gi|261752416|ref|ZP_05996125.1| GTP binding protein HflX [Brucella suis bv. 5 str. 513]
 gi|261742169|gb|EEY30095.1| GTP binding protein HflX [Brucella suis bv. 5 str. 513]
          Length = 346

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 30/188 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 109 VALVGYTNAGKSTLFNRMTGAQV-LAEDMLFATLDPTLRRIRLPHGETVILSDTVGFISN 167

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK---------------EISFPKNIDFIFI 325
                    + T  EV  ADLIL +++I+                   I    +   + +
Sbjct: 168 LPHHLVAAFRATLEEVVEADLILHVRDISDPDNAAQAEDVENILAGLGIEPQDHARVVEV 227

Query: 326 GTKSDLYSTYT-------------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D                   E     +S+ TGEG++ L++ I++ ++     +   
Sbjct: 228 WNKIDNLDESAREAALRLAAAGSEEGRPIPVSAITGEGVDRLLSLIETRIAGALGSVDLV 287

Query: 373 IPSHKRHL 380
           +     HL
Sbjct: 288 LSPFDLHL 295


>gi|86749994|ref|YP_486490.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris HaA2]
 gi|86573022|gb|ABD07579.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris HaA2]
          Length = 457

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/269 (20%), Positives = 104/269 (38%), Gaps = 34/269 (12%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E   ++ +  ++ + S L   W   L   R          E +       + + +
Sbjct: 140 RAKTKEGALQVELAHLNYQRSRLVRSWTH-LERQRGGFGFMGGPGETQI--EADRRLIGD 196

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  L+N++    +  +L    R       + ++G++NAGKS+LFN L + DV     + 
Sbjct: 197 RISRLENELKKVQATRRLHRAGRQRVPYRVVALVGYTNAGKSTLFNRLTRADVQAADMLF 256

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T    L       G    +SDT G             + T  EV  ADLIL +++I+ +
Sbjct: 257 ATLDPTLRALTLPHGGKAMLSDTVGFISNLPTQLVAAFRATLEEVLEADLILHVRDISHE 316

Query: 312 KEISFPKNIDFIF--------------IGTKSDLYSTYTEE-------------YDHLIS 344
              +  +++D +               I  K D +     E                ++S
Sbjct: 317 DAEAQERDVDAVLRQLGVEADGGRILEIWNKIDRFEPEQREELRNIAARRSEDRPCFMVS 376

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSI 373
           + +GEG++EL+  I+  L+     L  +I
Sbjct: 377 AVSGEGVDELLLAIEQRLAAWRSVLDLTI 405


>gi|271963831|ref|YP_003338027.1| GTP-binding protein Era [Streptosporangium roseum DSM 43021]
 gi|270507006|gb|ACZ85284.1| GTP-binding protein Era [Streptosporangium roseum DSM 43021]
          Length = 306

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
             +G  N GKS+L NAL    VAI +  P TTR V+   +      + I DT G+     
Sbjct: 17  CFVGRPNVGKSTLMNALVGTKVAITSSKPQTTRRVIRGIVHRPDAQLIIVDTPGLHRPRT 76

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYS 333
           ++ +         +   D+I      N           ++++  +    + + TK DL +
Sbjct: 77  LLGERLDSLVLSTLTEVDVIGFCVPANEPIGKGDRFIAEKLAAIRKTPVVAVVTKCDLAT 136


>gi|313900792|ref|ZP_07834282.1| hydrogenase maturation GTPase HydF [Clostridium sp. HGF2]
 gi|312954212|gb|EFR35890.1| hydrogenase maturation GTPase HydF [Clostridium sp. HGF2]
          Length = 396

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I I G  N+GKS+L NA+ K+ V+ V+ + GTT D +   ++L G   V   DTAG  
Sbjct: 12  LHIGIFGKRNSGKSTLLNAITKQKVSTVSPVAGTTTDPVVKAMELHGLGPVVFYDTAGFD 71

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL-KEINSKKEISF-----PKNIDFIFIGTKSDLY 332
           +  ++     +++T    +  D+ +L+ ++++   E+++      K I  + I  +    
Sbjct: 72  DEGELGNLR-VEKTVEVTQKTDMAILVFRDMDISWEMTWYKKLKEKQIPVLCIWNQDAED 130

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                +    I   TG   + LI  +K ++++ 
Sbjct: 131 EKVYADMVTQIEKKTGS--DVLITNVKELVTDD 161


>gi|163793043|ref|ZP_02187019.1| GTP-binding protein Era [alpha proteobacterium BAL199]
 gi|159181689|gb|EDP66201.1| GTP-binding protein Era [alpha proteobacterium BAL199]
          Length = 308

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 28/218 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N+L    V+IVT    TTR  +   +      + + DT G
Sbjct: 14  RCGF-VALVGAPNAGKSTLTNSLVGAKVSIVTHKAQTTRSRIRGIVMAGATQLILVDTPG 72

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPK--NIDFIFIGT 327
           I +    +++  +   +    +AD+I+L+ +        ++++ I   K      +    
Sbjct: 73  IFKPRRRLDRAMVHAAWAGAGDADIIVLVADAARGRIEEDTQRIIDGLKANGQRAVLALN 132

Query: 328 KSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D         +   Y+E +D     +IS+ TG G ++L   +   +       P    
Sbjct: 133 KVDGMKRERLLPIAQAYSEAFDFDSVFMISALTGNGCDDLTRYLAERMPQGPWHYPEDEL 192

Query: 375 SHKRHLYHLSQTVRYLEMASLN-----EKDCGLDIIAE 407
           S        ++  R      L+     E     DI  E
Sbjct: 193 SDVPMRLLAAEVTREQVFLKLHDELPYETTVETDIWTE 230


>gi|119872584|ref|YP_930591.1| small GTP-binding protein [Pyrobaculum islandicum DSM 4184]
 gi|119673992|gb|ABL88248.1| small GTP-binding protein [Pyrobaculum islandicum DSM 4184]
          Length = 372

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 31/203 (15%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG----YKIVILGHSNAGKSSLFN 237
           E + +   + ++  I  +K  +   + + +   I++       ++VI G+++AGK++LFN
Sbjct: 145 EYIVDAYYRHMVRRISTIKRKLEE-VRRSRAMYILKRREAGVPEVVITGYTSAGKTTLFN 203

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            +  ++  +V   P  T +  +  LDL G  + ++DT G  +    V  E    T  E+ 
Sbjct: 204 KMVGENK-LVDGKPFATLETYSRALDLWGRRIVLTDTIGFIDDLPPVLIESFHSTLQEII 262

Query: 298 NADLILLLKEINSKKEISFPK--------------NIDFIFIGTKSDLYSTYTE------ 337
           +AD+ILL+ + +  +E    K                  I +  K D             
Sbjct: 263 DADIILLVLDGSEPEEEVLRKLETSVETLGEVGVSRDKVILVINKVDKIGVQKIRHLRNV 322

Query: 338 -----EYDHLISSFTGEGLEELI 355
                E+   IS+ TG G+E L 
Sbjct: 323 VSKYFEWFVPISALTGFGIETLK 345


>gi|118618892|ref|YP_907224.1| GTP-binding protein Era [Mycobacterium ulcerans Agy99]
 gi|118571002|gb|ABL05753.1| GTP-binding protein Era [Mycobacterium ulcerans Agy99]
          Length = 300

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 83/234 (35%), Gaps = 33/234 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NAL    VAI +  P TTR  +   +  E + + + DT G+    
Sbjct: 10  VCLVGRPNTGKSTLTNALVGTKVAITSMRPQTTRHTIRGIVHRESFQIILVDTPGLHRPR 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIGTKSDL 331
            ++ K             D+I L    +           ++  +    +  + I TK D 
Sbjct: 70  TLLGKRLNDLVRDTYSEVDVIGLCIPADESIGPGDRWIIEQIAATAPKVKLVVIVTKIDK 129

Query: 332 YST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                                    +S+ TG  +E LI+ +   L       P    + +
Sbjct: 130 VPKDQVAAQLVAVSELVTNSAEIVPVSAVTGAQVEVLIDVLARTLPQGPAYYPDGELTDE 189

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
                +++ +R   +  +++ +    +           + +++     E L+D+
Sbjct: 190 PEEVLMAELIREATLEGVHD-ELPHSLAVV--------IDEVSPREGREDLIDV 234


>gi|114762884|ref|ZP_01442316.1| GTP-binding protein HflX [Pelagibaca bermudensis HTCC2601]
 gi|114544494|gb|EAU47501.1| GTP-binding protein HflX [Roseovarius sp. HTCC2601]
          Length = 417

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 98/263 (37%), Gaps = 31/263 (11%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ M  +S + + L   W   L   R  +       E +       + +   
Sbjct: 113 AATREGVLQVEMAALSYQRTRLVRAWTH-LERQRGGLGFVGGPGETQI--EADRRAIDEQ 169

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           ++ L+  +   +    L    R       + ++G++NAGKS+LFN L   +V    D+  
Sbjct: 170 LVRLRRQLERVVKTRDLHRKARAKVPFPIVALVGYTNAGKSTLFNRLTGAEVM-AKDMLF 228

Query: 253 TTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D     + L  G  V +SDT G             + T  EV  AD+I+ +++I+  
Sbjct: 229 ATLDPTMRAVKLPTGIDVILSDTVGFISDLPTELVAAFRATLEEVLAADIIVHVRDISHP 288

Query: 312 -------------KEISFPKNIDFIFIGTKSD----------LYSTYTEEYDHLISSFTG 348
                          +   + +  + +  K+D          L     EE    +S+ TG
Sbjct: 289 NTEEQAADVAAILDSLGVDEEVPLVELWNKTDRLAPDVHEGVLQRAAREENIFAVSALTG 348

Query: 349 EGLEELINKIKSILSNKFKKLPF 371
           EGL+ ++  I   L  +  +   
Sbjct: 349 EGLDTMLEAITERLQGETLEEEL 371


>gi|156932891|ref|YP_001436807.1| GTP-binding protein Era [Cronobacter sakazakii ATCC BAA-894]
 gi|189037649|sp|A7MH00|ERA_ENTS8 RecName: Full=GTPase Era
 gi|156531145|gb|ABU75971.1| hypothetical protein ESA_00693 [Cronobacter sakazakii ATCC BAA-894]
          Length = 301

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAINKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 DKAELLPHLQFLGSQMNFLDIVPISAETGMNVDTIAAIVRKHLPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|16761492|ref|NP_457109.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140811|ref|NP_804153.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213161854|ref|ZP_03347564.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213420939|ref|ZP_03354005.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213425277|ref|ZP_03358027.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213613050|ref|ZP_03370876.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213646354|ref|ZP_03376407.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289825502|ref|ZP_06544709.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|21263585|sp|Q8Z4K5|ERA_SALTI RecName: Full=GTPase Era
 gi|25294154|pir||AB0829 GTP-binding protein [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16503792|emb|CAD02782.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136436|gb|AAO68002.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 301

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ + + ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGMNVDTIASIVRKHLPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|118594602|ref|ZP_01551949.1| GTPase [Methylophilales bacterium HTCC2181]
 gi|118440380|gb|EAV47007.1| GTPase [Methylophilales bacterium HTCC2181]
          Length = 294

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 69/207 (33%), Gaps = 22/207 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N      ++I +    TTR  L              DT G +   
Sbjct: 10  IAIVGQPNVGKSTLLNYFVGTKLSITSRKAQTTRYQLLGIHSSPNTQYIFVDTPGYQLKH 69

Query: 282 DIVEKEGIKRT-FLEVENADLILLLKEINSKKEISF------PKNIDFIFIGTKSDLYST 334
             +   G+ +T    ++  D+IL L E     +         P     +    K DL   
Sbjct: 70  LNMLNRGLNKTVQQALKEVDVILFLIEPGVLDQTDLKILSMIPGETPVVLAINKVDLLKD 129

Query: 335 ------YTEEYD--------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                 Y +E D           S      LE L+  +K  L  +         + K   
Sbjct: 130 KNKLLGYIKELDGIGRFQSIVPTSVKKSNNLEPLMQALKPFLPEQEFIFKEDELTDKNER 189

Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAE 407
           +  ++ VR  ++  L  ++    I  E
Sbjct: 190 FLAAEIVRE-KVFRLTGQELPYSIAVE 215


>gi|255325164|ref|ZP_05366270.1| GTP-binding protein HflX [Corynebacterium tuberculostearicum SK141]
 gi|255297729|gb|EET77040.1| GTP-binding protein HflX [Corynebacterium tuberculostearicum SK141]
          Length = 497

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 93/236 (39%), Gaps = 33/236 (13%)

Query: 188 SSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV 244
             + +  ++  L+  + +     + K  +  R+   +I I G++NAGKSSL NA+    V
Sbjct: 234 DRRRIRTEMARLRKQLRAMKTAREVKRSKRQRSTIAQIAIAGYTNAGKSSLINAMTGAGV 293

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D  T    L +G  V  +DT G          E  K T  EV  AD++L
Sbjct: 294 -LVEDALFATLDPTTRRATLADGRQVVFTDTVGFVRHLPTQLVEAFKSTLEEVLAADIML 352

Query: 304 LLKEINSKKEISF----------------PKNIDFIFIGTKSD---------LYSTYTEE 338
            + + +    +                   +    I +  K D         L      E
Sbjct: 353 HVVDGSDPFPLKQIEAVNQVIYDIVSETGEQAPPEIIVINKIDQADPLVLAELRHVLDHE 412

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVRYLE 391
               +S+ TGEG++EL  +++  L+++   +   +P  +       H   TVR+ E
Sbjct: 413 DVVYVSARTGEGIDELTARVELFLNSRDSHVKLQVPFTRGDVVARVHAEGTVRHEE 468


>gi|222085896|ref|YP_002544427.1| GTP-binding protein [Agrobacterium radiobacter K84]
 gi|221723344|gb|ACM26500.1| GTP-binding protein [Agrobacterium radiobacter K84]
          Length = 443

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 106/275 (38%), Gaps = 34/275 (12%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           +S  E   ++ +  ++ +   L   W   L   R          E +       +++   
Sbjct: 122 ASTKEGTLQVELAHLNYQKGRLVRSWTH-LERQRGGAGFMGGPGETQI--EADRRQLQER 178

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           I+ L+ ++   +   +L    R       + ++G++NAGKS+LFN +    V +  D+  
Sbjct: 179 IIRLERELEQVVRTRQLHRAKRRKVPHPIVALVGYTNAGKSTLFNRITGAGV-LAEDMLF 237

Query: 253 TTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D     + L  G  V +SDT G             + T  EV  ADLIL +++++ +
Sbjct: 238 ATLDPTLRRMKLPHGRTVILSDTVGFISDLPTHLVAAFRATLEEVLEADLILHVRDLSDE 297

Query: 312 KEISFPKNIDFIF----------------IGTKSD----------LYSTYTEEYDHLISS 345
              +   ++  I                 +  K D          +    T E    +S+
Sbjct: 298 DNQAQSADVMRILGDLGIGEAEGAERILEVWNKIDRLEPEAHDAIVQKASTAENVIAVSA 357

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            +GEG++ L+++I   LS    +   ++P  K  L
Sbjct: 358 MSGEGVDRLMDEISRRLSGVLTETTITLPLDKLAL 392


>gi|78213819|ref|YP_382598.1| putative GTP-binding protein, transporter associated [Synechococcus
           sp. CC9605]
 gi|78198278|gb|ABB36043.1| putative GTP-binding protein, transporter associated [Synechococcus
           sp. CC9605]
          Length = 558

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 99/289 (34%), Gaps = 41/289 (14%)

Query: 123 IDLLEAESLADLISS----ETEMQRRL-SME--GMSGELSSLYGQWIDKLTHIRSFIEAD 175
           +  ++A +L  L+S      +E+   + +      +G L     Q   +L  +     + 
Sbjct: 258 LTPVQARNLERLLSCPVSDRSELILDIFAQRAGSAAGRLQVELAQLRYRLPRLLGRGSSL 317

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK--------IVILGH 227
                    +     ++  D   +   I   +   +  +  R+  +        + ++G+
Sbjct: 318 SRQGGGIGTRGPGETQLEKDRRAISRRIERLLRDQRQLQSHRSRLRDQRRGLPRVALVGY 377

Query: 228 SNAGKSSLFNALAKK---DVAIVTDIPGTTRDVLTIDLDLE-----GYLVKISDTAGIRE 279
           +NAGKSSL NAL  K   D  +  +    T D  T  LDL         + ++DT G   
Sbjct: 378 TNAGKSSLLNALCGKRASDRVLAENKLFATLDPTTRKLDLPCPGTRPQRLLLTDTVGFIR 437

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-----------FIFIGTK 328
                  E  + T  E  +AD++LL+ ++           +               I  +
Sbjct: 438 DLPAPLVEAFRATLEEALDADVLLLVVDLADPDWEGHLDTVHRLLDDLGSTALRRVIANQ 497

Query: 329 SDLYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLP 370
            D       E  H         S+  G+GL+ L   ++    +   + P
Sbjct: 498 IDRCEATAIETIHQRDPDALFLSAVRGDGLQGLQQWLREQFFDPGAESP 546


>gi|88858203|ref|ZP_01132845.1| GTP-binding protein era [Pseudoalteromonas tunicata D2]
 gi|88819820|gb|EAR29633.1| GTP-binding protein era [Pseudoalteromonas tunicata D2]
          Length = 299

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS++ N +  + V+I +    TTR  +        Y     DT G+  E 
Sbjct: 10  IAIVGRPNVGKSTILNEIVGQKVSITSRKAQTTRHRIMGIHTEGDYQAVYVDTPGLHIEE 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +LI+ + E     +  ++   K        + +  K D   
Sbjct: 70  KRAINRLMNRAAASSISDVELIIFVVEGTHWTADDDMVLHKVKQTGRPVLLVINKVDQVK 129

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E + H               +S+   + ++ + ++++  L       P    + +  
Sbjct: 130 EKEELFPHLQWLGEQADFVAILPVSATQAKNIDLIKDQVRKYLQPSEFIFPEDYVTDRST 189

Query: 380 LYHLSQTVR 388
            +  ++ VR
Sbjct: 190 RFLAAEIVR 198


>gi|323342097|ref|ZP_08082330.1| GTP-binding protein Era [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464522|gb|EFY09715.1| GTP-binding protein Era [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 298

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 8/121 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  NAGKS+L N + K+ +AIVT+   TTRD +      E Y +   DT GI +  
Sbjct: 8   ISIVGRPNAGKSTLINQIVKQKIAIVTEKAQTTRDAIIGVKTEEDYQLIFIDTPGIHKPK 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
             + +   +  +   +  DL+  + +             E      I    I  K D  S
Sbjct: 68  HQLGERMNRTAYAHFKGVDLVYYIIDGAEPFGTGDEFVIERLSKLKIPVFLIINKVDKMS 127

Query: 334 T 334
            
Sbjct: 128 E 128


>gi|221485521|gb|EEE23802.1| GTP-binding protein, putative [Toxoplasma gondii GT1]
          Length = 499

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 110/298 (36%), Gaps = 51/298 (17%)

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS----FIEADLDFSEEE 182
           +AE   D   ++ E   ++S+      +     +  D    + +          +F   E
Sbjct: 199 QAEDTGDA-DADNEGDPQVSLVEQESRMRFWQEEQEDDGLPLLARPFVHAFQPREFLNRE 257

Query: 183 DVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNAL 239
           D+   S ++     +     I++H  +    L ++  N + ++  +GHSN GKSSL NAL
Sbjct: 258 DLPWLSPEQRKYSRILFGKPIAAHPVLVAQTLHKLPHNPWPQVAAVGHSNVGKSSLLNAL 317

Query: 240 A-KKDVAIVTDIPGTTRDVLTID-------LDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
              +DVA     PG TR + T D       +DL GY         ++E   I+ +E   R
Sbjct: 318 MHGRDVARSCSKPGRTRHLFTFDLGNHLSLVDLPGYGFA-RVKPQLKEEWAILIEEYFTR 376

Query: 292 TFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDL------------ 331
           +         +L L +     E        +   KN+ F  + TK+DL            
Sbjct: 377 SKQLRR----VLSLVDATKGVEALDERLWQLLAEKNLPFQVVLTKADLLTARELHAAMFD 432

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                       T    + H +SS    G+ EL   + ++ S+  K+    +   +  
Sbjct: 433 VLSRLQTVEKKETLLHPFVHAVSSRHNHGIPELRASLAAVASDWRKRQGLPLLKFQGQ 490


>gi|310780551|ref|YP_003968883.1| GTP-binding proten HflX [Ilyobacter polytropus DSM 2926]
 gi|309749874|gb|ADO84535.1| GTP-binding proten HflX [Ilyobacter polytropus DSM 2926]
          Length = 441

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 99/269 (36%), Gaps = 27/269 (10%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++++  +      M             +L+   + I        + ++      + ++D
Sbjct: 125 RAKSKEGKLQVELAMLKYQKPRLIGLGGELSRTGAGIGTRGLGETKLELDRRVISKRISD 184

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD-------VAIVT 248
           I     ++       +      +   + ++G++NAGKS++ N L + +        + V 
Sbjct: 185 IEKELEEVKKQREVQRKQRKRTSIPTVALVGYTNAGKSTIMNHLMQMEEEEDTRTKSFVK 244

Query: 249 DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           D+   T D     + LE      + DT G          E  K T  EVE A L+L + +
Sbjct: 245 DMLFATLDPFHRKIKLEDNLEFILIDTVGFVSKLPHDLVESFKSTLEEVEEASLLLYVVD 304

Query: 308 INSKK------------EISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLISSFTG 348
           I+ +             E    K+  F+ +  K D  S+          E    IS+  G
Sbjct: 305 ISREDYKHQLKVTRNVVEELNVKDTPFLVVYNKIDKLSSEELEKTGDIFEKSVYISAIEG 364

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +G+ EL+ +I+  +    K++   IP  +
Sbjct: 365 KGIGELLKEIEKEIFKTSKEVTLLIPFSR 393


>gi|310658154|ref|YP_003935875.1| iron-only hydrogenase maturation protein [Clostridium sticklandii
           DSM 519]
 gi|308824932|emb|CBH20970.1| Iron-only hydrogenase maturation protein [Clostridium sticklandii]
          Length = 398

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 17/168 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G  NAGKSSL NA+ ++ V++V+DI GTT D +   ++L  Y  V   DTAG
Sbjct: 8   NRTHIGIFGKRNAGKSSLLNAITEQKVSLVSDIGGTTTDPVKKAMELLPYGPVLFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDF-----IFIGTK 328
           + +   + E     R        D  L++ +IN    + E    +         + +  K
Sbjct: 68  LDDVGVLGELRK-NRAKEMFTQIDFALIVHDINDIDKEFESELLREFKRFSVSYMIVINK 126

Query: 329 SDLYSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKL 369
            D     T++           +S+   E + +    +   LS K ++ 
Sbjct: 127 LDSADEETKQQIQETYPEAFFLSTSKREDVLDFKKALIDKLSKKMEEE 174


>gi|25028740|ref|NP_738794.1| GTP-binding protein Era [Corynebacterium efficiens YS-314]
 gi|23494026|dbj|BAC18994.1| putative GTP-binding protein [Corynebacterium efficiens YS-314]
          Length = 323

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 84/223 (37%), Gaps = 25/223 (11%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           ++ +   +S     E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  + 
Sbjct: 12  RDPVRGSMSFTDTPEGFRSGF-VSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIR 70

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------- 311
             +  E   + + DT G+     ++ +   +       + DLI L      K        
Sbjct: 71  GLVHREDAQIIVVDTPGLHRPRTLLGERLNESVKDTYSDVDLIGLTIPATDKIGPGDRWI 130

Query: 312 --KEISFPKNIDFIFIGTKSDLYS--------------TYTEEYDHLISSFTGEGLEELI 355
                +       + I TK D  S                 E     +SS +GE ++ L 
Sbjct: 131 LDAVRTAAPKTPIVGIVTKIDKASWDQVAAQLMAVHELLGGESEVVPVSSASGENIDTLA 190

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
             I  +L    K  P    + +     +S+ +R   ++ L ++
Sbjct: 191 AVIAGLLPEGPKYYPDDHITDEDIETRMSELIREAALSGLKDE 233


>gi|254386099|ref|ZP_05001413.1| ATP/GTP-binding protein [Streptomyces sp. Mg1]
 gi|194344958|gb|EDX25924.1| ATP/GTP-binding protein [Streptomyces sp. Mg1]
          Length = 510

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS--EEEDVQNFSSKEV 192
            +++     ++++  M   +      W   L+            +    E       + +
Sbjct: 200 HAKSREGKAQVALAQMQ-YMLPRLRGWGASLSRQMGGGGGGGMATRGPGETKIETDRRRI 258

Query: 193 LNDILFLKNDISSHI--SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTD 249
              +  ++ +I+      + K  E  RN    + I G++NAGKSSL N L    V +   
Sbjct: 259 REKMAKMRREIAEMKTGREIKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENA 318

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  T    +       G +  ++DT G          E  + T  EV ++DLIL + + +
Sbjct: 319 LFATLDPTVRRAETPSGRIYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHIVDGS 378

Query: 310 SKKEISFPK------------NIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGEG 350
                                N+  I +  K+D             E +   +S+ TG G
Sbjct: 379 HPAPEEQLAAVREVIREVGAVNVPEIVVINKADAADPLVLQRLLRIERHSIAVSARTGMG 438

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           + +L+  I + L     ++   +P  +  L   +  
Sbjct: 439 IAKLLELIDTELPRPEVEVEALVPYTRGSLIARAHA 474


>gi|56459445|ref|YP_154726.1| GTPase, HflX [Idiomarina loihiensis L2TR]
 gi|56178455|gb|AAV81177.1| GTPase, HflX [Idiomarina loihiensis L2TR]
          Length = 428

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 97/262 (37%), Gaps = 23/262 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLIRGRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +IL     +     QG+      +   + ++G++NAGKS+LFN L +  V     +  T 
Sbjct: 173 NILKRLEKVQKQREQGRRARKKADIPTVSLVGYTNAGKSTLFNRLTEAGVYAADQLFATL 232

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-- 312
              L      +   V ++DT G             K T  E + ADL+L + +++ ++  
Sbjct: 233 DPTLRKLAVEDIGEVILADTVGFIRHLPHDLVAAFKATLQETQEADLLLHVVDVSDEQQQ 292

Query: 313 ----------EISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEE 353
                     E     ++  + I  K D         D+          +S+  G G+EE
Sbjct: 293 NNIDQVAEVLEEIDAGDVPQLIICNKIDQVEGAEPRIDYDDNQKPIRVWVSAQQGLGIEE 352

Query: 354 LINKIKSILSNKFKKLPFSIPS 375
           ++  ++ IL  +  +L   IP 
Sbjct: 353 VLEALRQILGPQMVELTLKIPH 374


>gi|325963341|ref|YP_004241247.1| GTP-binding protein Era [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469428|gb|ADX73113.1| GTP-binding protein Era [Arthrobacter phenanthrenivorans Sphe3]
          Length = 319

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 10/126 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L NAL  K VAI +  P TTR  +   +  +   + + DT G
Sbjct: 17  RAGFSV-LVGRPNAGKSTLTNALVGKKVAITSAKPQTTRHTIRGIVHRQDAQLILVDTPG 75

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           +     ++ K   +     +   D I      N K          +++       I I T
Sbjct: 76  LHRPRTLLGKRLNELVADTLAEVDAIGFCLPANEKIGPGDKFIAAQLAAVGRKPVIAIVT 135

Query: 328 KSDLYS 333
           K+DL  
Sbjct: 136 KADLVD 141


>gi|313605975|gb|EFR83128.1| tRNA modification GTPase MnmE [Listeria monocytogenes FSL F2-208]
          Length = 61

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 381 YHLSQTVRYLEMASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439
             L Q +  L   +   +    +DI+  ++  A   LG+ITG    ++LLD +F++FC+G
Sbjct: 1   ALLHQALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLG 60

Query: 440 K 440
           K
Sbjct: 61  K 61


>gi|312131219|ref|YP_003998559.1| gtp-binding protein hflx [Leadbetterella byssophila DSM 17132]
 gi|311907765|gb|ADQ18206.1| GTP-binding protein HflX [Leadbetterella byssophila DSM 17132]
          Length = 414

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 15/186 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAI 246
             + V + I FLK  +     Q       R+   ++ ++G++N GKS+L   L K DV  
Sbjct: 172 DKRIVQDRIAFLKEKLDKIDKQAATRRKERSRLVRVSLVGYTNVGKSTLMRKLTKSDV-F 230

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + L      ++DT G          E  K T  E+  AD+++ + 
Sbjct: 231 AENKLFATIDSTVRKVVLGHIPFLLTDTVGFIRKLPTTLVESFKSTLDEIREADILIHVV 290

Query: 307 EINS---KKEISF---------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           +I+    +++I            ++   + +  K D Y   +EE        T E L++ 
Sbjct: 291 DISHPSFEEQIEIVNSTLGEIGAQDKPTLLVFNKLDQYQPESEE-GLDKHLATEEDLKKN 349

Query: 355 INKIKS 360
           + ++++
Sbjct: 350 LERLET 355


>gi|302790107|ref|XP_002976821.1| hypothetical protein SELMODRAFT_105942 [Selaginella moellendorffii]
 gi|300155299|gb|EFJ21931.1| hypothetical protein SELMODRAFT_105942 [Selaginella moellendorffii]
          Length = 471

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 64/155 (41%), Gaps = 5/155 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +   ++ I G +N GKS++ N+L +K+  +    PG TRD +TID +     V++ DTAG
Sbjct: 192 QKPLRLAIAGRTNVGKSTVINSLLRKERVLTGPEPGLTRDAITIDFEFNKKPVRLVDTAG 251

Query: 277 IRETDDIVEKEGIKRTFLE---VENADLILLLKEINSKKEISF-PKNIDFIFIGTKSDLY 332
             +   + E        L    +  A ++ ++ +     +     +N +       +D  
Sbjct: 252 WIQRSQLEEGPMALSAMLARRSLMTAHVVAIVLDAQEIAQSKMTLRNSEAALARWVTDEG 311

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                   + +    G+   +L  K+   +  + +
Sbjct: 312 RALI-IVVNKMDVLKGQKNADLRKKLMEAVPKEIQ 345



 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 27/175 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIP--GTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ILG  N GKSSL+N L  +  AIV D P    TRD+      L     K+ D+AG+  
Sbjct: 4   VIILGRPNVGKSSLYNRLVHRKEAIVYDTPDSHVTRDIREGSAKLSDLRFKVFDSAGLET 63

Query: 280 TDDIVEKEGIKRTFLE--VENADLILLLKE-------INSKKEISFPK---NIDFIFIGT 327
           +++               +      L L +       ++ +  + F K   N+  + +  
Sbjct: 64  SEEGETVLARTTGLTATFLRTCHAALFLIDGRAGVSPLDKEAVMWFRKLNLNLPVVLVVN 123

Query: 328 KSD-------LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           K++       + +   E Y         +S+ TGEGL +L  +++ IL    +KL
Sbjct: 124 KAEKITGDHQIMANIAESYSLGLGDPVPVSAETGEGLADLFQRLQPILDAAKEKL 178


>gi|300717986|ref|YP_003742789.1| GTP-binding protein [Erwinia billingiae Eb661]
 gi|299063822|emb|CAX60942.1| GTP-binding protein [Erwinia billingiae Eb661]
          Length = 301

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 75/197 (38%), Gaps = 23/197 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E    G+ I I+G  N GKS+L N L  + ++I +  P TTR  +        Y     D
Sbjct: 4   ETTHCGF-IAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVD 62

Query: 274 TAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFPKNIDFIFIG- 326
           T G+  E    + +   +     + + +L++ + E      + +  ++  ++     +  
Sbjct: 63  TPGLHMEEKRAINRLMNRAASSSIGDVELVIFVVEGTRWTADDEMVVNKLRDNRVPVLLA 122

Query: 327 -TKSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPF 371
             K D  +  +    H+               S+ +G+ ++ + + ++  L       P 
Sbjct: 123 INKVDNITDKSILLPHMQFLSQQMDFMDVVPISAESGKNVDTIASIVRKRLPEAVHHFPE 182

Query: 372 SIPSHKRHLYHLSQTVR 388
              + +   +  S+ +R
Sbjct: 183 DYVTDRSQRFMASEIIR 199


>gi|294791503|ref|ZP_06756660.1| GTP-binding protein [Scardovia inopinata F0304]
 gi|294457974|gb|EFG26328.1| GTP-binding protein [Scardovia inopinata F0304]
          Length = 540

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 92/256 (35%), Gaps = 26/256 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+  I+        K G   RN    + ++G++NAGKSSL N L   
Sbjct: 266 ELDRRVIRTRMARLRKQIARMAPARDIKRGSRRRNSLPTVAVVGYTNAGKSSLINRLTNS 325

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
              +   +  T    +      +       DT G          E  K T  EV  A LI
Sbjct: 326 HELVENALFATLDTAVRQSKTADSRKFMYVDTVGFVRRLPTQLIEAFKSTLEEVAQASLI 385

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEYD-------HL 342
           + + +I+                ++   + I  + +  K D     T +           
Sbjct: 386 VHVVDISYPDPFSQIDAVNKVLADVPGVEGIPTLMVFNKVDRVDNTTRQRIENLAPDAFF 445

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TGEG++ L + +++ L      +   IP  +  L    +    L+ A   ++    
Sbjct: 446 VSAATGEGIDRLRHAVQAGLPRPNVHVDAVIPYSQGSLISQIRQFGSLDSADYMDRGVH- 504

Query: 403 DIIA-ENLRLASVSLG 417
            ++A  + RLA+  + 
Sbjct: 505 -LVADVDDRLAARIIS 519


>gi|255280317|ref|ZP_05344872.1| GTP-binding protein HflX [Bryantella formatexigens DSM 14469]
 gi|255269408|gb|EET62613.1| GTP-binding protein HflX [Bryantella formatexigens DSM 14469]
          Length = 415

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 102/281 (36%), Gaps = 29/281 (10%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           +S +E + ++ +  +    + L G   + L+ +   I       ++ ++     K+ +  
Sbjct: 118 ASTSEGKIQVELAQLKYRQARLVG-LRNSLSRLGGGIGTRGPGEKKLEMDRRLIKDRIAQ 176

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +    +++  H    +   + +      I+G++NAGKS+L N L    V    D    T 
Sbjct: 177 LNRELSEVKRHREVTRSRRMRQQTPVAAIVGYTNAGKSTLLNTLTGSQVME-EDKLFATL 235

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D  T  L+L  G  + ++DT G          +  + T  E + AD+IL + + ++ +  
Sbjct: 236 DPTTRVLELPSGQEMLLTDTVGFIRKLPHHLIDAFRSTLEEAKYADIILHVVDASNPQAE 295

Query: 315 SFPK------------NIDFIFIGTKSDL------YSTYTEEYDHLISSFTGEGLEELIN 356
                               I +  K D             +    +S+  G  LEEL  
Sbjct: 296 QQMAVVYETLENLGVSGKTVITLFNKQDKTLTGETLRDSRADRVIPVSAKYGSRLEELKA 355

Query: 357 KIKSILSNKFKKLPFSIPSH--------KRHLYHLSQTVRY 389
            ++ IL+ +   +               +RH   L +  R 
Sbjct: 356 VLEEILNERNVLIERLYSYSDAGLIQLIRRHGQLLQEEYRA 396


>gi|206579346|ref|YP_002237091.1| GTP-binding protein Era [Klebsiella pneumoniae 342]
 gi|288934053|ref|YP_003438112.1| GTP-binding protein Era [Klebsiella variicola At-22]
 gi|290508249|ref|ZP_06547620.1| GTP-binding protein Era [Klebsiella sp. 1_1_55]
 gi|226741220|sp|B5XNH1|ERA_KLEP3 RecName: Full=GTPase Era
 gi|206568404|gb|ACI10180.1| GTP-binding protein Era [Klebsiella pneumoniae 342]
 gi|288888782|gb|ADC57100.1| GTP-binding protein Era [Klebsiella variicola At-22]
 gi|289777643|gb|EFD85640.1| GTP-binding protein Era [Klebsiella sp. 1_1_55]
          Length = 301

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTQDDEMVLNKLRDAKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 DKAELLPHLQFLASQMNFLDIVPISAETGTNVDTIAAIVRKHLPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|153940181|ref|YP_001392939.1| GTP-binding protein [Clostridium botulinum F str. Langeland]
 gi|152936077|gb|ABS41575.1| GTP-binding protein [Clostridium botulinum F str. Langeland]
 gi|295320917|gb|ADG01295.1| GTP-binding protein [Clostridium botulinum F str. 230613]
          Length = 399

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 19/175 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           N   I  +G +N+GKSSL NA+  +D++IV+ I GTT D ++  ++L     V  +DTAG
Sbjct: 8   NRIHITFIGKTNSGKSSLMNAIIGQDISIVSPIEGTTTDPVSKSMELIPLGPVLFTDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           + +  ++  K  I++T   +   D  + +          + K        NI +I +  K
Sbjct: 68  LEDNTELG-KVRIEKTLNTLLKTDFAIYVMSAKDIDINVYKKTINKFKEQNISYITVINK 126

Query: 329 SDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            D+             E    +SS     +  L + I   LS    K   +I  +
Sbjct: 127 MDIIEKNKIDNIKKIIEDPIFVSSNDINSILNLKDLIIKNLSK--TKEDDTIIGN 179


>gi|283956075|ref|ZP_06373562.1| GTP-binding protein ERA-like protein [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792395|gb|EFC31177.1| GTP-binding protein ERA-like protein [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 291

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G +NAGKS+L N+L ++ +A+V+     TR  +   +  E   +   DT 
Sbjct: 1   MKSGF-VSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNIDFIFIGTKSD 330
           G+ E+   + +  ++     + + D+IL +  +     + +  +S    +  I    K D
Sbjct: 60  GLHESGARLNQLLVQSAIKSMRDCDMILFVASVFDNTKDYENFLSLSPQVPHIIALNKVD 119

Query: 331 LYSTYT 336
           L    T
Sbjct: 120 LTDNAT 125


>gi|269956972|ref|YP_003326761.1| GTP-binding protein Era [Xylanimonas cellulosilytica DSM 15894]
 gi|269305653|gb|ACZ31203.1| GTP-binding protein Era [Xylanimonas cellulosilytica DSM 15894]
          Length = 319

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   ++G  NAGKS+L NAL  + VAI++  P TTR  +   +  +   + + DT G
Sbjct: 11  RSGF-ACLVGRPNAGKSTLTNALVGEKVAIMSARPQTTRHTIRGIVHRDDAQLILVDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           +     ++ +         +   D+I      + K
Sbjct: 70  LHRPRTLLGQRLNDLVKETLGEVDVIAFCLPADQK 104


>gi|213692452|ref|YP_002323038.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523913|gb|ACJ52660.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320458597|dbj|BAJ69218.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 354

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 72/178 (40%), Gaps = 6/178 (3%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L N L  K +AI +  P TTR  +   L  +   + + DT 
Sbjct: 44  YRSGF-VAVVGRPNVGKSTLINTLIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTP 102

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNIDFIFIGTKSDLY 332
           GI     ++ +         + + D++  L   + +    +      +   F   + D  
Sbjct: 103 GIHRPRTLLGQRLNDVVDESLADVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGT 162

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
             +      +++     G ++LINK+  I  N F      +P       +L++    L
Sbjct: 163 FKWRIPLIAIVTKIDELGRQQLINKLIEI--NDFADFSDIVPVSALKHDNLAEVKNVL 218


>gi|269216965|ref|ZP_06160819.1| GTP-binding protein [Slackia exigua ATCC 700122]
 gi|269129772|gb|EEZ60856.1| GTP-binding protein [Slackia exigua ATCC 700122]
          Length = 403

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 25/179 (13%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           ++    GE I  G+     G  NAGKSSL NA+  +D+A+V+++ GTT D +   ++L  
Sbjct: 3   LNGATSGERIHIGF----FGACNAGKSSLVNAVVGQDLAVVSEVAGTTTDPVRKAMELAP 58

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFP 317
              V I DT G+ +  ++     +++    +++ D  +L+ +          +   +   
Sbjct: 59  LGPVLIIDTPGMDDEGELGALR-VRKARRVLDSTDAAVLVADSVTGLSDADRTLVGLFEE 117

Query: 318 KNIDFIFIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNK 365
           + + +  +  K DL      +                S+  G G+ EL   I +I +  
Sbjct: 118 RGVPYAIVMGKCDLVGEQEPKMSLEANANPPHGRLFASALMGTGVHELKELIGTIAAGA 176


>gi|222055346|ref|YP_002537708.1| ferrous iron transport protein B [Geobacter sp. FRC-32]
 gi|221564635|gb|ACM20607.1| ferrous iron transport protein B [Geobacter sp. FRC-32]
          Length = 663

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N GKS LFNAL    V  V++ PGT+ +V      + G + +I DT G+   
Sbjct: 23  KVALVGNPNVGKSVLFNALTGAYVT-VSNYPGTSVEVARGSASINGEVCEIIDTPGMYSL 81

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------KNIDFIFIGTKSD---- 330
             I E+E + R  L  E+ D++L + +  + + +           +  + +    D    
Sbjct: 82  LPITEEERVAREILLKESPDVVLHVLDARNLERMLVMTLQLIDAQLPVVLVVNIMDEAER 141

Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELINKI 358
                   L            ++    GLEE+   I
Sbjct: 142 MGLVIDIPLLQEKLGIPVIGAATAKKRGLEEIRKAI 177


>gi|328543512|ref|YP_004303621.1| GTP-binding protein Era [polymorphum gilvum SL003B-26A1]
 gi|326413256|gb|ADZ70319.1| GTP-binding protein Era [Polymorphum gilvum SL003B-26A1]
          Length = 318

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 22/161 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ I ++G  NAGKS+L N L    V+IVT    TTR ++          +   DT G
Sbjct: 25  RAGF-IALIGAPNAGKSTLLNQLVGTKVSIVTHKVQTTRAIVRGIAMHGSAQLVFVDTPG 83

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS--KKEISFPKNI------DFIFIGTK 328
           I +    +++  +   +    +AD+I LL +      +E+    +         + I  K
Sbjct: 84  IFQPKRRLDRAMVDTAWGGARDADVIALLIDARKGLSEEVETILDRLADLRGPRVLILNK 143

Query: 329 SDLY-------------STYTEEYDHLISSFTGEGLEELIN 356
            D+                   E   ++S+ TG+G+ ++++
Sbjct: 144 IDVARREKLLTLAQAANERVAFERTFMVSALTGDGVADMLD 184


>gi|325281477|ref|YP_004254019.1| GTP-binding proten HflX [Odoribacter splanchnicus DSM 20712]
 gi|324313286|gb|ADY33839.1| GTP-binding proten HflX [Odoribacter splanchnicus DSM 20712]
          Length = 430

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 81/221 (36%), Gaps = 49/221 (22%)

Query: 188 SSKEVLNDILFLKNDI-----SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
             + + + I  LKN++        I +   G+++R    + ++G++N GKS+L N L+K 
Sbjct: 190 DRRIIRDKISRLKNELTKIDKQKVIQRKNRGKLVR----VALVGYTNVGKSTLMNLLSKS 245

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           DV    +    T D     + ++     ++DT G          E  K T  EV  AD+I
Sbjct: 246 DV-FAENKLFATLDTTVRKIAIKNVPFLLADTVGFIRKLPHHLVESFKSTLDEVREADVI 304

Query: 303 LLLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------- 340
           L + +I+  +                 +    I I  K D +    +E D          
Sbjct: 305 LHVVDISHPQFEDQMKVVNATLAELIKEPKPTIIIFNKIDAFHYVQKEEDDLTPVTRENY 364

Query: 341 -----------------HLISSFTGEGLEELINKIKSILSN 364
                              IS+   E +EEL  K+  I+  
Sbjct: 365 SLNDLKQMWMSRQGSETVYISAVKKENIEELKEKLYDIVKE 405


>gi|256825020|ref|YP_003148980.1| GTP-binding protein Era [Kytococcus sedentarius DSM 20547]
 gi|256688413|gb|ACV06215.1| GTP-binding protein Era [Kytococcus sedentarius DSM 20547]
          Length = 310

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 86/219 (39%), Gaps = 27/219 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ +  +G  NAGKS+L NAL  + +AI ++ P TTR  +   +  E   + + DT G
Sbjct: 12  RAGF-VCFVGRPNAGKSTLTNALVGQKIAITSNKPQTTRHTVRGIIGDEASQIVVVDTPG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIF 324
           + +   ++ +         + + D+I      + K            +E+   +    I 
Sbjct: 71  LHKPRTLLGQRLNDVVRETLLDVDVIGFCMPADQKPGPGDKYIAAELEELRRGRRTPIIA 130

Query: 325 IGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           I TK+DL S                 +     S+  GE L+ +   I   L       P 
Sbjct: 131 IATKADLVSRDQLAEHLMAIDQLGDFDEIVPCSAVNGEQLDVVRRLITEKLPLSPPLYPE 190

Query: 372 SIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL 409
            + + +     +++ VR   +  + +E    L ++ E +
Sbjct: 191 DVLTDEPTDVMIAELVREAALEGVRDEMPHSLAVVVEEM 229


>gi|167625539|ref|YP_001675833.1| GTP1/OBG protein [Shewanella halifaxensis HAW-EB4]
 gi|167355561|gb|ABZ78174.1| GTP1/OBG protein [Shewanella halifaxensis HAW-EB4]
          Length = 431

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 111/314 (35%), Gaps = 36/314 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 114 RARTFEGKLQVELAQLRHMSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     Q +      +   + ++G++NAGKS+LFN L   DV    D    T
Sbjct: 173 TINRRLAKVDKQRDQSRRARQRSDMSTVSLVGYTNAGKSTLFNGLTTSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
            D     LDL    V ++DT G             K T  E   ADL+L + +   +   
Sbjct: 232 LDPTLRKLDLPDGAVILADTVGFIRHLPHDLVAAFKATLQETRQADLLLHVVDSADEKMG 291

Query: 312 ----------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLE 352
                     KEI   +      +  K DL        D+          +S+   +GLE
Sbjct: 292 DNFKQVQNVLKEIDAIEIPQL-IVCNKIDLLDEVKPRIDYDDEGTPIRVWVSAQQHKGLE 350

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD-IIAENLRL 411
            +   I  ++     +L   IP+   H  +L Q  + L++    E D   D II+  L  
Sbjct: 351 LVEEAINQLVGKAILELTLQIPASAGH--YLGQFYK-LDVIQQKEYDDLGDCIISVRLLE 407

Query: 412 A-SVSL-----GKI 419
           A    L     G+I
Sbjct: 408 ADWRRLVKQSQGEI 421


>gi|303244519|ref|ZP_07330853.1| small GTP-binding protein [Methanothermococcus okinawensis IH1]
 gi|302485067|gb|EFL47997.1| small GTP-binding protein [Methanothermococcus okinawensis IH1]
          Length = 190

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 34/177 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL----------DLEGYLV 269
           +K+V++G  N GKS+L NA+  K ++ V+++ GTT+  +              + +   +
Sbjct: 12  FKVVLIGPENCGKSALLNAIFGKYISNVSEVGGTTKKPVKKFWGKLKYGKSKKEPKIANI 71

Query: 270 KISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------- 318
              D  G+    +   I+  + ++ T+ E+E AD+I+ + +       SF K        
Sbjct: 72  SFVDLGGLYVGEKKSPIMVGKILEETYKEIEKADIIIHVIDGEKGLSKSFEKLHHLLKYR 131

Query: 319 -NIDFIFIGTKSDLYSTYTEEY------------DHLISSFTGEGLEELINKIKSIL 362
                I +  K DL      +Y                S+ T EG+  LI+ I   L
Sbjct: 132 YQKPIIVVINKCDLLDNDKRKYLKSHIENRLENKVIFTSTITYEGITNLIDAIIQFL 188


>gi|73662763|ref|YP_301544.1| GTPase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495278|dbj|BAE18599.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 411

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 104/263 (39%), Gaps = 23/263 (8%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLMPRLQGHGRSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +      + +++ ++G++NAGKSS FNALAK+       +   
Sbjct: 180 NEIKHQLETVVEHRERYRNKREQNHVFQVALVGYTNAGKSSWFNALAKES-TYEKKLLFA 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T  + + +G+ + ISDT G  +          K T  E +NADL+L + + +  +
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKNADLLLHVVDSSHPE 298

Query: 313 ------------EISFPKNIDFIFIGTKSDLYS---TYTEEYDHLISSFTGEGLEE---- 353
                              I    I  K DL+      T +    +SS   + +E+    
Sbjct: 299 YRAQYDTVNQIVNDLDMGQIPQAIIFNKKDLHDGSLPATNKPHVFVSSKDEKDIEKVKSL 358

Query: 354 LINKIKSILSNKFKKLPFSIPSH 376
           L N+IK +L+   + +P +    
Sbjct: 359 LFNQIKQVLTYYEESVPSANADR 381


>gi|217966941|ref|YP_002352447.1| ferrous iron transport protein B [Dictyoglomus turgidum DSM 6724]
 gi|217336040|gb|ACK41833.1| ferrous iron transport protein B [Dictyoglomus turgidum DSM 6724]
          Length = 669

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 72/209 (34%), Gaps = 28/209 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ + G+ N+GKS++FNAL     A V + PG T +          Y V ++D  G   
Sbjct: 6   VKVALAGNPNSGKSTIFNALTGGH-AHVGNWPGVTVERKDGTFRYRDYEVIVTDLPGTYS 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLY- 332
                  E I R F+  E  D+++ + +  +         +      + I      DL  
Sbjct: 65  LTAFSIDERIARDFILKEKPDVVVCVADATNLLRSLYLFVLLRELGANAILDLNMGDLIE 124

Query: 333 ----------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                              + S   G G+ EL  +I        K     +   + +   
Sbjct: 125 GKIKVDIEGMEKALGAPVVITSGIKGTGINELKEEI-------VKAKDREVAPFRINYGD 177

Query: 383 LSQTVRYLEMASLNEKDCGLD--IIAENL 409
           + + +R LE   L+      D   +A  L
Sbjct: 178 IEEAIRKLED-KLSGYSLPYDKRFLAIKL 205


>gi|225414492|ref|ZP_03761681.1| hypothetical protein CLOSTASPAR_05715 [Clostridium asparagiforme
           DSM 15981]
 gi|225041982|gb|EEG52228.1| hypothetical protein CLOSTASPAR_05715 [Clostridium asparagiforme
           DSM 15981]
          Length = 697

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 84/229 (36%), Gaps = 44/229 (19%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I +   ++  +G+ N GK++LFNA     +  V + PG T + +  + + +G  +K+ D 
Sbjct: 33  IDKRPIRVGFVGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERVEGETNYKGRPIKVIDL 91

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTK 328
            GI        +E + R  +E    D+I+ + + +S +                I     
Sbjct: 92  PGIYSLTSYTIEEKVTRKCIEDGEVDVIINVVDASSLERNLYLTMQLIELKKPVILALNM 151

Query: 329 SDLYSTYTEEYDHLI-------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D+      E D                S+    GL+ L++     + + +++ P  +  
Sbjct: 152 MDIVEERGMEIDMHRLPEMLGGIPVVPVSARKRTGLDVLMHA----VVHHYEEEPQGVVI 207

Query: 376 H----------------KRHLYHLSQ----TVRYLEMASLNEKDCGLDI 404
           H                +RH   +       +++LE   +   D  LD+
Sbjct: 208 HYSPQVEEKITRIEGELRRHYGEMDNMRWHAIKFLEFDEVVTSDHPLDV 256


>gi|229495280|ref|ZP_04389015.1| GTP-binding protein HflX [Porphyromonas endodontalis ATCC 35406]
 gi|229317723|gb|EEN83621.1| GTP-binding protein HflX [Porphyromonas endodontalis ATCC 35406]
          Length = 413

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 16/194 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + +L+ I  LK ++     Q  +    R    ++ ++G++N GKS+L N L+K +V  
Sbjct: 169 DKRIILDKISRLKEELVRIDKQKSVQRKNRGKMVRVALVGYTNVGKSTLMNMLSKSEV-F 227

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + L      +SDT G          E  K T  EV  ADL+L + 
Sbjct: 228 AENKLFATLDTTVRKVILHNLPFLMSDTVGFIRKLPTELIESFKSTLDEVREADLLLHVV 287

Query: 307 EINSK-------------KEISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLE 352
           +++               +EI   +N   + I  K D ++ T  EE D    S      E
Sbjct: 288 DLSHPDFESQIAVVEATLREILGNENKPTLLIFNKIDAFTFTPKEEDDLTPKSRENYSRE 347

Query: 353 ELINKIKSILSNKF 366
           EL     + +    
Sbjct: 348 ELERSWMAKMGQNC 361


>gi|163856075|ref|YP_001630373.1| GTP-binding protein Era [Bordetella petrii DSM 12804]
 gi|226741170|sp|A9IIJ3|ERA_BORPD RecName: Full=GTPase Era
 gi|163259803|emb|CAP42104.1| GTP-binding protein [Bordetella petrii]
          Length = 296

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 73/193 (37%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  N GKS+L NAL    ++IV+    TTR  +   L  E       DT G
Sbjct: 7   RTGF-VAVVGRPNVGKSTLTNALIGSKISIVSRKAQTTRHRIHGVLTREHEQFVFVDTPG 65

Query: 277 IRETDDIVEKEGIKRTF-LEVENADLILL------LKEINSKKEISFPKNIDFIFIGTKS 329
            +          + R     +   D+++         + ++K     P     I + +K 
Sbjct: 66  FQTRHGGAMNRMMNRVVTQALAEVDVVVHVVEAGKWTDGDAKLLPLLPDARRTILVVSKI 125

Query: 330 D--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           D              + + +  +    +S+   + L++L+++I + L            +
Sbjct: 126 DAVKRRDELFAFVSKIVAQHPYDAVVPVSAVKSQQLDQLLDEIAARLPEGEPLFEEDTLT 185

Query: 376 HKRHLYHLSQTVR 388
            +   +  ++ +R
Sbjct: 186 DRPMRFIAAELLR 198


>gi|291618445|ref|YP_003521187.1| Era [Pantoea ananatis LMG 20103]
 gi|291153475|gb|ADD78059.1| Era [Pantoea ananatis LMG 20103]
 gi|327394841|dbj|BAK12263.1| GTP-binding protein Era [Pantoea ananatis AJ13355]
          Length = 301

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     + + +LI+ + +        E+   K     +  +    K D   
Sbjct: 71  KRAINRLMNRAASSSIGDVELIIFVVDGTRWTPDDEMVLNKLRDGKVPVLLAINKVDNIQ 130

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L           IS+ TG+ ++ +    +  L       P    + +  
Sbjct: 131 DKSILLPHLQFLSQQMNFIDIVPISAETGKNVDTIAAIARKHLPESDHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|218438310|ref|YP_002376639.1| small GTP-binding protein [Cyanothece sp. PCC 7424]
 gi|218171038|gb|ACK69771.1| small GTP-binding protein [Cyanothece sp. PCC 7424]
          Length = 529

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 105/251 (41%), Gaps = 38/251 (15%)

Query: 190 KEVLNDILFLKNDI--SSHISQGKLGE--IIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           K V   +  +++ +   + +S+ +  E  + R   ++V+ G  +AGK+SL NAL  + V 
Sbjct: 99  KAVRRQVQQIQDKVSQEALLSRSQEIEANLARGELRVVVFGTGSAGKTSLVNALIGEMVG 158

Query: 246 IVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETD-DIVEKEGIKRTFLEVENADLI 302
            V    GTT+   T  L L+G    + I+DT GI E      E+E + R       ADL+
Sbjct: 159 NVEATMGTTQIGQTYRLKLKGITREILITDTPGILEAGIAGTEREKLARQL--ATEADLL 216

Query: 303 LLLKEINSKKEISFPKNIDFI------FIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           L + + + ++    P  +          I  K+DLY+   +E               ++N
Sbjct: 217 LFVIDNDLRQSEYDPLRMLVEIGKRSLLIFNKTDLYTDEDQEV--------------ILN 262

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQ---------TVRYLEMASLNEKDCGLDIIAE 407
           ++K  + +  +       +       L            +  ++  +   +  G D+IA+
Sbjct: 263 QLKQRVQDFIRDTDIVALAANPQPIQLENGEIIQPESDIIPLIKRLAAVLRAEGEDLIAD 322

Query: 408 NLRLASVSLGK 418
           N+ L S  LG+
Sbjct: 323 NILLQSQRLGE 333


>gi|168181051|ref|ZP_02615715.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
 gi|226951037|ref|YP_002806128.1| GTP-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|182668048|gb|EDT80027.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
 gi|226843593|gb|ACO86259.1| GTP-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 399

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 19/175 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           N   I  +G +N+GKSSL NA+  +D++IV+ I GTT D ++  ++L     V  +DTAG
Sbjct: 8   NRIHITFIGKTNSGKSSLMNAIIGQDISIVSPIEGTTTDPVSKSMELIPLGPVLFTDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           + +  ++  K  I++T   +   D  + +          + K        NI +I +  K
Sbjct: 68  LEDNTELG-KVRIEKTLNTLLKTDFAIYVMSAKDIDINLYKKTINKFKEQNISYITVINK 126

Query: 329 SDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            D+             E    +SS     +  L + I   LS    K   +I  +
Sbjct: 127 MDIIEKNKIDNIKKIIEDPIFVSSNDINSILNLKDLIIKNLSK--TKEDDTIIGN 179


>gi|163746239|ref|ZP_02153597.1| GTP-binding protein HflX, putative [Oceanibulbus indolifex HEL-45]
 gi|161380124|gb|EDQ04535.1| GTP-binding protein HflX, putative [Oceanibulbus indolifex HEL-45]
          Length = 432

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 89/261 (34%), Gaps = 23/261 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ M  ++ + + L   W                   + +    +  + L  
Sbjct: 128 AATREGVLQVEMAALNYQRTRLVRAWTHLERQRGGLGFVGGPGETQIEADRRAIDDQLVR 187

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +      +    +  +          + ++G++NAGKS+LFN L   +V     +  T  
Sbjct: 188 LRRQLEKVVKTRALHRAARAKVPFPIVALVGYTNAGKSTLFNRLTGAEVMAKDMLFATLD 247

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--- 312
             +   +  +G  + +SDT G             + T  EV  AD+I  +++++  +   
Sbjct: 248 PTMRSLVLPDGPEIILSDTVGFISDLPTELVASFRATLEEVLAADIICHVRDVSHAETEE 307

Query: 313 ----------EISFPKNIDFIFIGTKSDLYSTYTEEYDHL----------ISSFTGEGLE 352
                      +  PK      +  K DL      +              IS+ TGEGLE
Sbjct: 308 QAQNVRDILASLGVPKETRSFEVWNKLDLLPEDRADAMRARAARNDDLLAISAITGEGLE 367

Query: 353 ELINKIKSILSNKFKKLPFSI 373
            L   I   L    ++   ++
Sbjct: 368 ALQETIAEALQGAVREAVLTL 388


>gi|157144498|ref|YP_001451817.1| GTP-binding protein Era [Citrobacter koseri ATCC BAA-895]
 gi|189037259|sp|A8AD18|ERA_CITK8 RecName: Full=GTPase Era
 gi|157081703|gb|ABV11381.1| hypothetical protein CKO_00216 [Citrobacter koseri ATCC BAA-895]
          Length = 301

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               +S+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPVSAETGMNVDTIAGIVRKHLPEATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|29654793|ref|NP_820485.1| GTP-binding protein Era [Coxiella burnetii RSA 493]
 gi|161829871|ref|YP_001597344.1| GTP-binding protein Era [Coxiella burnetii RSA 331]
 gi|1706686|sp|P51836|ERA_COXBU RecName: Full=GTPase Era
 gi|189037265|sp|A9N941|ERA_COXBR RecName: Full=GTPase Era
 gi|439872|gb|AAA69691.1| GTP-binding protein [Coxiella burnetii]
 gi|29542061|gb|AAO90999.1| GTP-binding protein [Coxiella burnetii RSA 493]
 gi|161761738|gb|ABX77380.1| GTP-binding protein Era [Coxiella burnetii RSA 331]
          Length = 295

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 21/187 (11%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TD 281
            I+G  N GKS+L N L ++ ++I +  P TTR  +      +   V   DT G+   T+
Sbjct: 10  AIIGRPNVGKSTLLNQLLEQKISITSRKPQTTRYQILGVKTFKDIQVIYVDTPGLHAGTE 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------DFIFIGTKSDLYSTY 335
             + +   +     + + D I+ + E + + + ++  +           +  K D     
Sbjct: 70  RTINRYMNRTARGALRDVDAIVFVIEPHWESQDAWVLDNLKEIETPVFLVINKVDKIKNR 129

Query: 336 TEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            E    +               S+ TG+ +  L   +  ++       P    + +   +
Sbjct: 130 AELLPLIEKVSSLYAFQKITPLSAKTGDQVGTLEQAVHQLMPESPFYFPPEQVTDRSDQF 189

Query: 382 HLSQTVR 388
             S+ +R
Sbjct: 190 MASEIIR 196


>gi|332880831|ref|ZP_08448502.1| GTP-binding protein HflX [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332681214|gb|EGJ54140.1| GTP-binding protein HflX [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 419

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 88/220 (40%), Gaps = 23/220 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +LN +  LK  + + I + K  +    G   ++ ++G++N GKS+L N L+K D
Sbjct: 181 EMDRRIILNRMSLLKQRL-AEIDRQKTTQRSNRGRMIRVALVGYTNVGKSTLMNLLSKSD 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     +SDT G          +  K T  EV  ADL+L
Sbjct: 240 V-FAENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLL 298

Query: 304 LLKEI---NSKKEISFPK---------NIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEG 350
            + +I   + + +I   +         +   + +  K D Y     EE D   ++     
Sbjct: 299 HVVDIAHPDFEDQIQVVEKTLGDLGCSDKPCMIVFNKIDAYDWVEKEEDDLTPATKENVS 358

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
           L++L+       +   ++    I    R   +L +  + L
Sbjct: 359 LDDLMK------TWMARRNDNCIFISAREKTNLEELKKVL 392


>gi|313886207|ref|ZP_07819937.1| GTP-binding protein HflX [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332299693|ref|YP_004441614.1| GTP-binding protein HflX [Porphyromonas asaccharolytica DSM 20707]
 gi|312924386|gb|EFR35165.1| GTP-binding protein HflX [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332176756|gb|AEE12446.1| GTP-binding protein HflX [Porphyromonas asaccharolytica DSM 20707]
          Length = 411

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 15/167 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + +L  I  LK  +     Q  +    R    ++ ++G++N GKS+L N LAK D+  
Sbjct: 170 DRRIILRKISQLKEQLKKIDKQKSVQRQNRGKMVRVALVGYTNVGKSTLMNVLAKSDI-F 228

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + L      ++DT G          E  K T  EV  +DLIL + 
Sbjct: 229 AENKLFATLDTTVRKVVLGNLPFLLADTVGFIRKLPTQLVESFKSTLDEVRESDLILHVV 288

Query: 307 EINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEYD 340
           +I+  +             EI    +   I +  K D Y    ++ D
Sbjct: 289 DISHPEFEDQIAVVTETLREIEALGDKPQILVFNKIDAYQHIPKDPD 335


>gi|329946930|ref|ZP_08294342.1| ribosome biogenesis GTPase Era [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526741|gb|EGF53754.1| ribosome biogenesis GTPase Era [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 424

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 4/142 (2%)

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229
           S + A LD    +       ++  ++     +   + I      E  R G+   I+G  N
Sbjct: 80  SDVTARLD---ADGFPILDEEDDADEPADSADSARAEIVVPGFPEDFRAGF-ACIVGRPN 135

Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289
           AGKS+L NAL    +AI +  P TTR  +   +  E   + + DT G+     ++ K   
Sbjct: 136 AGKSTLTNALVGAKIAITSGRPQTTRHNVRGVIHKEKAQIVLVDTPGLHRPRTLLGKRLN 195

Query: 290 KRTFLEVENADLILLLKEINSK 311
                 + + D+++     N K
Sbjct: 196 DLVRETLTDVDVVVFCIPANEK 217


>gi|332977455|gb|EGK14230.1| GTP-binding protein Era [Psychrobacter sp. 1501(2011)]
          Length = 338

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 91/254 (35%), Gaps = 39/254 (15%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
              + +  L       + + S  ++  L E  R GY + I+G  N GKS+L N +  + +
Sbjct: 5   PQENKELDLQSTDTTDSLLDSFFNEESLPEDYRAGY-VAIVGRPNVGKSTLMNHMLGQKL 63

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVE------ 297
           +I +  P TTR  +   L          DT GI   +  ++ +   K  F  +       
Sbjct: 64  SITSRKPQTTRHRIHGILSNSEMQAVFVDTPGIHSNEVRLINERMNKAAFSALVDVDLVL 123

Query: 298 --------NADLILLLKEINSKKEISFPKNIDFIFIGTKSD----------LYSTYTEEY 339
                     D +L L++I          +   + +  K+D          L  TY E +
Sbjct: 124 FVVDGEQWREDDLLTLEKIGET-------DTPVVLVINKADTIKDKGSILPLIETYHENF 176

Query: 340 DH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
           +      +S+   + LE L   I+S L            + +   +  S+ +R   M   
Sbjct: 177 EFADIVPVSALKNQNLERLEQVIRSHLPQGAPIYDTEQITDRSERFLASEIIREKIMRQS 236

Query: 396 NEKDCGLDI-IAEN 408
            + +   D+ +  +
Sbjct: 237 GD-EVPYDLTVQID 249


>gi|260433544|ref|ZP_05787515.1| GTP-binding protein HflX [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417372|gb|EEX10631.1| GTP-binding protein HflX [Silicibacter lacuscaerulensis ITI-1157]
          Length = 423

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 28/206 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + ++ L+  +   +    L    R       + ++G++NAGKS+LFN L   
Sbjct: 166 EADRRAIDDQLVRLRRQLQKVVKTRTLHRAARAKVPYPIVALVGYTNAGKSTLFNRLTGA 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V    D+   T D     ++L +G  V +SDT G             + T  EV  ADL
Sbjct: 226 EVM-AKDMLFATLDPTMRRIELPDGPEVILSDTVGFISNLPTELVAAFRATLEEVLAADL 284

Query: 302 ILLLKEINSKKEISFPKNIDFIF-------------IGTKSDLYS----------TYTEE 338
           I+ +++I+  +     +++  I              +  K DL S             + 
Sbjct: 285 IVHVRDISHPETEEQAEDVRSILASLGVDDTRPQLEVWNKIDLLSDEDRQAVQARAERDP 344

Query: 339 YDHLISSFTGEGLEELINKIKSILSN 364
               IS+ TGEG++ L+ +I +IL  
Sbjct: 345 AVFPISAVTGEGIDPLLTEIATILQG 370


>gi|332827554|gb|EGK00300.1| GTP-binding protein HflX [Dysgonomonas gadei ATCC BAA-286]
          Length = 408

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 78/193 (40%), Gaps = 15/193 (7%)

Query: 188 SSKEVLNDILFLKNDISSHISQ-GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + +LN I  LK ++ +   Q     +      ++ ++G++N GKS+L N L+K +V  
Sbjct: 170 DRRIILNKIALLKEELKNIDKQMASQRKNRGKMVRVALVGYTNVGKSTLMNLLSKSEV-F 228

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + ++     +SDT G          E  K T  EV  ADL++ + 
Sbjct: 229 AENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTHLVESFKSTLDEVREADLLVHVV 288

Query: 307 EINS---KKEISFPKN---------IDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLEE 353
           +I+    +++I                 I +  K D ++ T  +E D   ++     LEE
Sbjct: 289 DISHPNFEEQIEVVNKTLLEIDKEEKPTILVFNKVDAFTYTPKDEDDLTPATKENISLEE 348

Query: 354 LINKIKSILSNKF 366
           L       L +  
Sbjct: 349 LEKSWMHKLHDDC 361


>gi|221632863|ref|YP_002522085.1| putative GTPase [Thermomicrobium roseum DSM 5159]
 gi|221155423|gb|ACM04550.1| putative GTPase of unknown function subfamily [Thermomicrobium
           roseum DSM 5159]
          Length = 424

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 92/279 (32%), Gaps = 26/279 (9%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T   R    +  +   L  L   W          +        + ++    ++E + 
Sbjct: 109 HARTREGRLQVELAQLEYRLPRLTRMWTHLSRQAVGGVGLRGPGETQLEIDRRRARERIA 168

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I     ++  H ++ +          I ++G++NAGKS+L NAL   DV +  D    T
Sbjct: 169 WIRRQLEEVREHRARYRQRRRQNRLPVIALVGYTNAGKSTLLNALTGADV-LAADKLFAT 227

Query: 255 RDVLTIDLDLEGYLV-KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D  T  L L    V  ++DT G             + T  E+ +A L+L + +I   K 
Sbjct: 228 LDPTTRRLRLSDSQVALLTDTVGFIHKLPTTLVAAFRATLEEILDAHLLLHVVDITHPKA 287

Query: 314 ISF------------PKNIDFIFIGTKSDLY------STYTEEYDH-----LISSFTGEG 350
                                I +  K D             E D       +S+ TG G
Sbjct: 288 AEQAAAVRQVLRELGADRYPTITVLNKIDRLEPTIDPDRLARELDIPTNAVFVSAATGYG 347

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           LE L ++I   L +        +    R    ++    +
Sbjct: 348 LETLRDRIARTLRDIATPRAVQLLIPYREQRLIATLEEH 386


>gi|329297706|ref|ZP_08255042.1| GTPase Era [Plautia stali symbiont]
          Length = 300

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+R E 
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGAYQAIYVDTPGLRMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFPKNIDFIFIG--TKSDLYS 333
              + +   +     + + +L++ + E      + +  ++  ++     +    K D   
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKVPVVLAVNKVDNIQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             +    H               IS+ TG+ ++ +    +  L       P    + +  
Sbjct: 131 DKSILLPHLQFLSQQMNFLEIVPISAETGKNMDAIAEITRKRLPLSDHLFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|297172549|gb|ADI23519.1| GTPase [uncultured Gemmatimonadales bacterium HF0770_41L09]
          Length = 317

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 22/177 (12%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +    E+ R GY + ++G  NAGKS+L N L  + ++IVT    TT   +T  L +   
Sbjct: 9   EESNPVEVARTGY-VTLVGRPNAGKSTLLNQLVGEHLSIVTPKAQTTWQRVTGILSVGTD 67

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPK 318
            +   DT G+ E  D++++  +      +  AD+ +LL +  +K          E     
Sbjct: 68  QIIFLDTPGLLEAKDMLQRAMLGAALEALAEADITILLIDSTTKPNSRETASTIEALSET 127

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLI------------SSFTGEGLEELINKIKSILS 363
           +        K D+                        SS TGEG + L+  +++ L 
Sbjct: 128 SAPLYIALNKVDIADEEAIRAWEAWADRELSGSVYRLSSLTGEGADALLEGLRADLP 184


>gi|260427894|ref|ZP_05781873.1| GTP-binding protein HflX [Citreicella sp. SE45]
 gi|260422386|gb|EEX15637.1| GTP-binding protein HflX [Citreicella sp. SE45]
          Length = 417

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 94/262 (35%), Gaps = 25/262 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ M  +S + + L   W                   + +    +  E L  
Sbjct: 113 AATREGVLQVEMAALSYQRTRLVRAWTHLERQRGGLGFVGGPGETQIEADRRAIDEQLVR 172

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +    + +       +          + ++G++NAGKS+LFN L   +V    D+   T 
Sbjct: 173 LRRQLDRVVKTRDLHRKARAKVPFPIVALVGYTNAGKSTLFNRLTGAEVM-AKDMLFATL 231

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           D     + L  G  V +SDT G             + T  EV  AD+++ +++I+     
Sbjct: 232 DPTMRAVRLPTGIEVILSDTVGFISDLPTELVAAFRATLEEVLAADVVVHVRDISHPNTE 291

Query: 312 ----------KEISFPKNIDFIFIGTKSD----------LYSTYTEEYDHLISSFTGEGL 351
                       +   + +  I +  K D          L     EE  + +S+ TG+GL
Sbjct: 292 EQSEDVETILASLGLDEEVPRIEVWNKIDRLHPDERDALLTRAEREEQVYAVSALTGDGL 351

Query: 352 EELINKIKSILSNKFKKLPFSI 373
           + ++  +  +L  +  +    +
Sbjct: 352 DVMLRAVTDLLQGETVEEELLL 373


>gi|289209107|ref|YP_003461173.1| GTP-binding protein Era [Thioalkalivibrio sp. K90mix]
 gi|288944738|gb|ADC72437.1| GTP-binding protein Era [Thioalkalivibrio sp. K90mix]
          Length = 303

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GK++L N L  + +A  T  P TTR+ +   +      + + DT GI    
Sbjct: 14  VALVGRPNVGKTTLMNRLVGEKLAATTRRPHTTRNRILGIVTEGDDQIVLMDTPGIDTER 73

Query: 282 DIVEKEGIKRTF-LEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYS 333
             +    + RT    + +ADL+  L E           +++        + +  K D   
Sbjct: 74  TRLVNRVLNRTASQALADADLVCFLVEAGRFGEGDERIEQLIRQSERPALLVINKVDRAR 133

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              E                   +S+ TG  +  LI++I++ L            S +  
Sbjct: 134 EKEELLPFIAGRMEAMPYAGVVPLSAKTGSNVAGLIDEIRAHLPAGPFLYDPEQLSDRPE 193

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +   + +R   + SL ++
Sbjct: 194 RFRAEEMIRESLLESLGQE 212


>gi|189425524|ref|YP_001952701.1| ferrous iron transporter B [Geobacter lovleyi SZ]
 gi|189421783|gb|ACD96181.1| ferrous iron transport protein B [Geobacter lovleyi SZ]
          Length = 657

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 73/185 (39%), Gaps = 15/185 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G+ N GKS LFNAL    V  V++ PGT+ +V      + G   ++ DT G+   
Sbjct: 16  RVALVGNPNVGKSVLFNALTGSYVT-VSNYPGTSVEVSRGTAVITGQSWQVIDTPGMYAV 74

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYST 334
             I E+E + R  L  E  D++L + +  + + +           +  + +    D    
Sbjct: 75  HTITEEERVAREILLNEKPDVVLHVLDARNLERMLAMTIQLIEAGLPVVLVVNIMDEAER 134

Query: 335 YTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
               +D                   +  I +IK+ ++   +     I   +     +++ 
Sbjct: 135 LGLSFDLPLLQQRLGIPVIAAATARKRGIEEIKTAIAEFGQSCGLPISYSRLLERDIAEV 194

Query: 387 VRYLE 391
            R L+
Sbjct: 195 SRLLQ 199


>gi|126436041|ref|YP_001071732.1| GTP-binding protein Era [Mycobacterium sp. JLS]
 gi|189037655|sp|A3Q264|ERA_MYCSJ RecName: Full=GTPase Era
 gi|126235841|gb|ABN99241.1| GTP-binding protein Era [Mycobacterium sp. JLS]
          Length = 299

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 87/239 (36%), Gaps = 34/239 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    VAI ++ P TTR  +   +  + + + + DT G
Sbjct: 5   RSGF-VCFVGRPNTGKSTLTNALVGTKVAITSNRPQTTRHTIRGIVHRDEFQIILVDTPG 63

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           +     ++ +             D+I L    +           ++  +       + I 
Sbjct: 64  LHRPRTLLGQRLNDLVKTTYSEVDVIGLCIPADEAIGPGDRWIHEQIRAVAPRTTLVVIV 123

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D                    +     +S+ TGE L+ L + +   L       P  
Sbjct: 124 TKIDKVPKDRVAAQLMAVSELIGPDAEIVPVSATTGEQLDVLTDVLAGKLPPGPAFYPDG 183

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
             + +     +++ +R   +  + + +    +           + +++   D + L+D+
Sbjct: 184 ELTDEPEETLMAELIREAALEGVRD-ELPHSLAVV--------IDEVSPREDRDDLIDV 233


>gi|282862300|ref|ZP_06271362.1| GTP-binding proten HflX [Streptomyces sp. ACTE]
 gi|282562639|gb|EFB68179.1| GTP-binding proten HflX [Streptomyces sp. ACTE]
          Length = 506

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 103/294 (35%), Gaps = 25/294 (8%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q +  +  + G   SL  Q     +     +        + +      +E +  +  
Sbjct: 204 SLAQMQYMLPRLRGWGQSLSRQMGGGGSSGGGGMATRGPGETKIETDRRRIREKMAKMRR 263

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
              ++ +     +          + I G++NAGKSSL N L    V +   +  T    +
Sbjct: 264 EIAEMKTGREIKRQERKRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 323

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEI 314
                  G L  ++DT G          E  + T  EV ++DLIL + +    +  ++  
Sbjct: 324 RRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGAHPVPEEQLA 383

Query: 315 SFPK--------NIDFIFIGTKSDLYST-------YTEEYDHLISSFTGEGLEELINKIK 359
           +  +        ++  I +  K+D             E+Y   +S+ TG G++EL+  I 
Sbjct: 384 AVREVIRDVGAVDVREIVVVNKADAADPEVLQRLLRNEKYAIAVSARTGAGIDELLALID 443

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQT------VRYLEMASLNEKDCGLDIIAE 407
           + L     ++   +P  +  L              +    +L +     ++ AE
Sbjct: 444 AELPRPSVEIEALVPYVQGALVSRVHAEGEVVSEEHTSEGTLLKARVHEELAAE 497


>gi|229823200|ref|ZP_04449269.1| hypothetical protein GCWU000282_00498 [Catonella morbi ATCC 51271]
 gi|229787366|gb|EEP23480.1| hypothetical protein GCWU000282_00498 [Catonella morbi ATCC 51271]
          Length = 417

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 102/262 (38%), Gaps = 21/262 (8%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + +     ++++   +  L  LYGQ    L+     I        + +      + V+
Sbjct: 116 MRARSREGKLQVALAQYNYLLPRLYGQGKH-LSRQGGGIGTRGPGETKLESDRRHIRSVI 174

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           + +     DI++H  + +        +++ ++G++NAGKS+L   L + +   V D    
Sbjct: 175 HHVKEELADIAAHRERTRSRRAQGGHWQVGLVGYTNAGKSTLLTQLTQSE-TYVQDQLFA 233

Query: 254 TRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D LT  + L+G     ++DT G  E          K T  E+   DL+L + + +   
Sbjct: 234 TLDPLTRRMPLKGEDRFTLTDTVGFIEELPTELIHAFKSTLEEIGGMDLLLHVVDASDPA 293

Query: 313 EISFPK------------NIDFIFIGTKSDLYS-----TYTEEYDHLISSFTGEGLEELI 355
           +    +            ++  + +  K D  +       T      IS++    ++ L 
Sbjct: 294 QTLHEQTVLRIIKELGYGHLPVLTVYNKIDCLAPDQSVQATAFPSIAISAYEPSHIDRLK 353

Query: 356 NKIKSILSNKFKKLPFSIPSHK 377
            +I  +L      +   IP+H+
Sbjct: 354 QEIWKLLMADADWVDQRIPAHE 375


>gi|87199949|ref|YP_497206.1| small GTP-binding protein domain-containing protein
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135630|gb|ABD26372.1| Small GTP-binding protein domain [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 426

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 114/320 (35%), Gaps = 40/320 (12%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E + ++ +  +  +   L   W   L   R          E +       + + N 
Sbjct: 110 AATAEGRLQVELAHLDYQAGRLVRSWTH-LERQRGGFGFLGGPGETQI--EADRRLIRNR 166

Query: 196 ILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  L+ ++        L    R       I ++G++NAGKS+LFN L   DV    D+  
Sbjct: 167 MARLRRELEQVRRTRGLHRERRQRAPWPVIALVGYTNAGKSTLFNRLTGADVM-AEDLLF 225

Query: 253 TTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--- 308
            T D     + L G     +SDT G             + T  EV  AD+I+ ++++   
Sbjct: 226 ATLDPTMRAIRLPGVEKAILSDTVGFISDLPTQLVAAFRATLEEVTAADVIVHVRDVANL 285

Query: 309 ---NSKKEISFP-----------KNIDFIFIGTKSDLY-------------STYTEEYDH 341
              + K E+                I  +    K DL              +   E    
Sbjct: 286 ASADQKAEVEQILADLGVIGEAGSTIPIVEAWNKWDLLTPEEQAMRQDLIAAKIAEVPVV 345

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH-LSQTVRYLEMASLNEKDC 400
            IS+ TG G+E L++K+  +L+   + L  ++P         L      +    ++  + 
Sbjct: 346 PISALTGAGVETLLDKLGEMLTGSAQTLELTVPLSDGQRLAWLHAHGDIISENQVDIAEI 405

Query: 401 GLDIIAENLRLASVSLGKIT 420
           G  +    +RL    LG+ T
Sbjct: 406 GPAMR-IKVRLTPRELGRFT 424


>gi|229817680|ref|ZP_04447962.1| hypothetical protein BIFANG_02951 [Bifidobacterium angulatum DSM
           20098]
 gi|229785469|gb|EEP21583.1| hypothetical protein BIFANG_02951 [Bifidobacterium angulatum DSM
           20098]
          Length = 334

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 82/216 (37%), Gaps = 30/216 (13%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E  R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L  +   + +
Sbjct: 20  ASEPYRSGF-VAVVGRPNVGKSTLVNALIGTQIAIASSRPETTRKAIRGVLTTDNAQLVL 78

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------------------K 311
            DT GI     ++ +         + + D++  L   +                     +
Sbjct: 79  VDTPGIHRPRTLLGQRLNDIVDESLSDVDVVAFLLPGDQEIGPGDKRIMSRLRANFATKR 138

Query: 312 KEISFPKNIDFIFIGTKSDLYS---------TYTEEYDHLISSFTGEGLEELINKIKSIL 362
           ++ +F  ++  I I TK D  S            E  D            + +++++S+L
Sbjct: 139 EDGTFKWHVPLIAIVTKIDELSREQLIAKLIEVNEFADFADIVPVSALKHDNLDEVRSVL 198

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            +   + P   P+ +       +T+  L   +  E+
Sbjct: 199 IDHTPEGPQMYPAEQLSEERPEETIAELIRGAFLEQ 234


>gi|171184518|ref|YP_001793437.1| GTP-binding proten HflX [Thermoproteus neutrophilus V24Sta]
 gi|170933730|gb|ACB38991.1| GTP-binding proten HflX [Thermoproteus neutrophilus V24Sta]
          Length = 403

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 33/188 (17%)

Query: 200 KNDISSHISQGKLGEIIRNGYK-------IVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
            + I   + + +   ++    +       +VI G+++AGK++LFN L  +D  +V   P 
Sbjct: 159 ISTIRRKLEEVRRSRVMHIAKRKEAGVPEVVITGYTSAGKTTLFNRLVGEDK-LVDGKPF 217

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
            T +  +  LDL G  V ++DT G  +    +  E    T  E+ +AD+ILL+ + +  +
Sbjct: 218 ATLETYSRSLDLWGKRVVVTDTIGFIDDLPPLLVESFHSTLQEIIDADVILLVVDGSEPR 277

Query: 313 EISFPK--------------NIDFIFIGTKSDLYSTYTEE-----------YDHLISSFT 347
           E    K                  I +  K D       +           +   +S+ T
Sbjct: 278 EEISRKIETSVATLGEVGISRDRVIPVVNKVDKIGVAEVKNLRGIVGRYFSWFIPVSALT 337

Query: 348 GEGLEELI 355
           G G+E L 
Sbjct: 338 GFGIEALK 345


>gi|299768754|ref|YP_003730780.1| GTP-binding proten HflX [Acinetobacter sp. DR1]
 gi|298698842|gb|ADI89407.1| GTP-binding proten HflX [Acinetobacter sp. DR1]
          Length = 447

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 113/323 (34%), Gaps = 34/323 (10%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + T E + ++ +  +    + L   W       +  I         E       + + 
Sbjct: 114 LRARTHEGKLQVELAQLKHLSTRLIRGWSADFEQQKGGIGLR---GPGETQLETDRRLIR 170

Query: 194 NDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             I  LK+ +         G   R       + ++G++NAGKS+LFN LAK DV    D 
Sbjct: 171 VRIAQLKDKLEKVHQTRIQGRAARQKAAIPTVSLVGYTNAGKSTLFNILAKSDV-YAADQ 229

Query: 251 PGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D     L+ +G   V ++DT G          E  K T  E   A L+L + + N
Sbjct: 230 LFATLDPTLRRLEWDGIGTVVLADTVGFVRNLQHDLIESFKATLEETLEATLLLHVIDSN 289

Query: 310 SKKEISFPK-----------NIDFIFIGTKSDLYSTYTE--------EYDHLISSFTGEG 350
           S   +   +           +   + +  K DL     +             +S+  G G
Sbjct: 290 SHDMLDQIEAVEGVLKEIGADAPVLRVYNKIDLSGEEAKIVYAEPHVPDRVYVSAHAGLG 349

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           LE L   ++  L  + +K    +             +  +E    ++      ++  ++R
Sbjct: 350 LELLQKAVQECLMGQIQKFSLILKPAYGKFRTQLYALNVIESEHYDDAG----LLHIDVR 405

Query: 411 LASVSLGKITGCVD--VEQLLDI 431
           +A   L K+       +E++L  
Sbjct: 406 IAPHKLEKLIRQAKLPLEEILGE 428


>gi|328955564|ref|YP_004372897.1| GTP-binding protein HflX [Coriobacterium glomerans PW2]
 gi|328455888|gb|AEB07082.1| GTP-binding protein HflX [Coriobacterium glomerans PW2]
          Length = 443

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 98/273 (35%), Gaps = 33/273 (12%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKN---DISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
           F + E       + +   I  LK     I +              ++I + G++NAGKS+
Sbjct: 165 FGQGESQLEVDRRLIRKRISALKRSLLQIETRRDVQSRARRESPAFRIALAGYTNAGKST 224

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           L N L   D+    D    T D  T    L  G L  ++DT G  +       +  K T 
Sbjct: 225 LMNRLTGSDIM-SADKLFATLDPTTRAFKLPGGRLCTLTDTVGFIQKLPHGLVDAFKSTL 283

Query: 294 LEVENADLILLLKEINSKKEISFPKNIDFIF------------IGTKSDLYSTYTE---E 338
            E  ++D+IL + + + +  +     +D +             +  K DL         E
Sbjct: 284 AEARDSDIILEVVDASDENYLRQMSAVDVVLDEIGASEQRRVTVLNKIDLIDPLDRADLE 343

Query: 339 YDHLI----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394
             H      SS  G G+E L+ ++    S     +   IP  +  L  L     ++    
Sbjct: 344 RRHPDAELVSSVNGLGIERLLERLSCEASTLDSVISLRIPYREAALISLVHEQGHVLQEV 403

Query: 395 LNEKDCGL--DI---IAENL---RLAS-VSLGK 418
            +E    L  DI   +AE L   R AS   L +
Sbjct: 404 FDEDAVRLVADIPPRVAERLIRYRDASTDQLSE 436


>gi|311278501|ref|YP_003940732.1| GTP-binding protein Era [Enterobacter cloacae SCF1]
 gi|308747696|gb|ADO47448.1| GTP-binding protein Era [Enterobacter cloacae SCF1]
          Length = 301

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGMNVDTIAGIVRKHLPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|304389932|ref|ZP_07371889.1| GTP-binding protein Era [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315657184|ref|ZP_07910068.1| GTP-binding protein Era [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|304326825|gb|EFL94066.1| GTP-binding protein Era [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315492287|gb|EFU81894.1| GTP-binding protein Era [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 333

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 77/207 (37%), Gaps = 23/207 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+   ++G  N GKS+L NA+  + +AI +D P TTR V    +    + + + D
Sbjct: 35  EDFRAGF-AAVIGRPNVGKSTLINAMVGRKIAITSDRPETTRRVARGIVHRPDFQLILVD 93

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIF 324
           T GI     ++ +             D+ +     +           +      +   I 
Sbjct: 94  TPGIHRPRTLLGQRLNDMVDDAFSEVDVAVFCVPADQPIGPGDRRIVETQLKTAHFPAIA 153

Query: 325 IGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + TK+D  S              +       IS+  G  ++ LI+ +   L       P 
Sbjct: 154 VVTKTDAASREQIAEQLLAVSQLHDFAEIVPISAHQGTQVQTLIDLLGQRLPLSPPLYPR 213

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEK 398
              + +     +S+ +R   + SL+++
Sbjct: 214 DQVTDEDDTAMISELIREAALESLSQE 240


>gi|300721489|ref|YP_003710764.1| putative GTPase [Xenorhabdus nematophila ATCC 19061]
 gi|297627981|emb|CBJ88530.1| putative GTPase subunit of protease with nucleoside triP hydrolase
           domain, together with HflC-HflK involved in stability of
           phage lambda cII repressor [Xenorhabdus nematophila ATCC
           19061]
          Length = 426

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 101/279 (36%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ + 
Sbjct: 114 RARTHEGKLQVELAQLRHLSTRLVRGWTH-LERQKGGIGLRGPGETQLESDRRMLRDKIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL   + +     QG+      +   + ++G++NAGKSSLFN++    V    D    T
Sbjct: 173 QILGRLSKVEKQREQGRQARNKADIPTVSLVGYTNAGKSSLFNSITSAKV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D++    V ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVDDVGTVVLADTVGFIRHLPHDLVAAFKATLQETRQAKLLLHVVDAADHRL 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 ++S  E      I  + +  K D+   +T   D           +S+ TGEG+ 
Sbjct: 292 DENIIAVDSVLEEIESNEIPSLMVMNKIDMLEDFTPRIDRDEENRPVRVWLSAQTGEGIS 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            L+  +   LS +       +P      R  ++  Q + 
Sbjct: 352 LLLQALTERLSGETAHYELHLPPEAGRLRSRFYQLQAIE 390


>gi|294626633|ref|ZP_06705230.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292599053|gb|EFF43193.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 439

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 95/288 (32%), Gaps = 29/288 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W          I        + +      +  +  +      +   
Sbjct: 126 LAQLRHMATRLVRGWTHLERQRGGSIGLRGPGETQLETDRRLLQRRVEQLQQRLEKVEVQ 185

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +   +     +I ++G++NAGKS+LFN L   + A V D    T D     + L G
Sbjct: 186 RTQMRRARMRSELPRIALVGYTNAGKSTLFNVLTGAE-AYVADQLFATLDPTVRRIALPG 244

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEI 314
               ++DT G             + T  E  +ADL+L + +            ++   + 
Sbjct: 245 GSAILADTVGFVRDLPHELVAAFRSTLSEARDADLLLHVVDAADPLREERILQVDEVLQA 304

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSI 361
               ++  + +  K D        +D               +S+  G GLEEL + +   
Sbjct: 305 VGAGDLPQLLVFNKIDKIEGAEVRHDAQDGIPDPARRERVWVSARDGRGLEELQHALGQR 364

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           L  +       +P        L   +  LE+    + D    ++  +L
Sbjct: 365 LDLRHLTGQLRLPP---SAGRLRSRLHQLEVVRNEQSDEEGWLLEVDL 409


>gi|291535016|emb|CBL08128.1| GTP-binding protein HflX [Roseburia intestinalis M50/1]
          Length = 414

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 34/240 (14%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           K+ +  +     ++  H    +     +      I+G++NAGKS+L N L    V +  D
Sbjct: 172 KDRIAQLNRELKEVRKHREITRAQREKKQIPVAAIVGYTNAGKSTLLNHLTGAGV-LEED 230

Query: 250 IPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D  T  L+L G   + ++DT G          E  K T  E + AD IL + + 
Sbjct: 231 KLFATLDPTTRVLELPGRQEILLTDTVGFIRKLPHHLIEAFKSTLEEAKYADYILHVVDA 290

Query: 309 NSKKEIS------------FPKNIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEG 350
           ++ +                 +    I +  K D          +  +Y   +S+  G G
Sbjct: 291 SNPQRDKQMHIVYDTLYQLDIREKTIITLFNKQDQVTDEEPIRDFKADYTLAVSAKKGTG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           LEEL     ++L +              +   + +T+ Y E   L +     +++ E  R
Sbjct: 351 LEELKELFCTLLRD--------------NKILVERTISYQEAGILQQIRKSGELLEEEYR 396


>gi|219856133|ref|YP_002473255.1| hypothetical protein CKR_2790 [Clostridium kluyveri NBRC 12016]
 gi|219569857|dbj|BAH07841.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 605

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 120/344 (34%), Gaps = 60/344 (17%)

Query: 134 LISSETEMQRRLSME--GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           +I   T +    +        ++     Q   +L  +                +    K+
Sbjct: 278 IIDRTTLILHIFATRAKSKESKMQVELAQLKYRLARLSGLGIVLSRTGGGIGTRGPGEKK 337

Query: 192 VLNDILFLKN---DISSHISQGK-----LGEIIRNGYKIVILGHSNAGKSSLFNALAK-- 241
           +  D   ++    +I+  + + K       E     Y + ++G++N+GKS+L N L +  
Sbjct: 338 LETDKRHIRERIYEINRELKKIKGVRKVQREKRNEIYNVSLVGYTNSGKSTLRNKLCEIA 397

Query: 242 -------KDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTF 293
                  KD     D+   T D  T  ++L +G  + I+DT G          E  K T 
Sbjct: 398 VPKESVVKDKVFEADMLFATLDTTTRAVELKDGRTITITDTVGFINKLPHDLVEAFKSTL 457

Query: 294 LEVENADLILLLKEINSKKEISF------------PKNIDFIFIGTKS---------DLY 332
            EV  +DL+L + +I+S+                   +   + +  K          D+ 
Sbjct: 458 EEVYYSDLLLHVVDISSEDAYQHIESVDKVLNQLGINDKPVLLVFNKIDKGKTEKIEDIK 517

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
             Y       IS+  G  LEEL+ +I  +L    KK+ + IP  +         V ++  
Sbjct: 518 DKYNGVESIYISAKQGINLEELLERISHMLPQSIKKVEYLIPYTE------QAAVAFIHR 571

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436
               EK        E+ R     +  +      E++ +  F KF
Sbjct: 572 NCKIEK--------EDYREQGTYISAL----VDEEVYNK-FRKF 602


>gi|260435681|ref|ZP_05789651.1| GTP-binding protein; HflX [Synechococcus sp. WH 8109]
 gi|260413555|gb|EEX06851.1| GTP-binding protein; HflX [Synechococcus sp. WH 8109]
          Length = 558

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 100/289 (34%), Gaps = 41/289 (14%)

Query: 123 IDLLEAESLADLISS----ETEMQRRL-SME--GMSGELSSLYGQWIDKLTHIRSFIEAD 175
           +  ++A +L  L+S      +E+   + +      +G L     Q   +L  +     + 
Sbjct: 258 LTPVQARNLERLLSCPVSDRSELILDIFAQRAGSAAGRLQVELAQLRYRLPRLLGRGSSL 317

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ--------GKLGEIIRNGYKIVILGH 227
                    +     ++  D   +   I   +           +L +  R+  ++ ++G+
Sbjct: 318 SRQGGGIGTRGPGETQLEKDRRAISRRIERLLRDQRQLQSHRSRLRDQRRDLPRVALVGY 377

Query: 228 SNAGKSSLFNALAKK---DVAIVTDIPGTTRDVLTIDLDLE-----GYLVKISDTAGIRE 279
           +NAGKSSL NAL  K   D  +  +    T D  T  LDL         + I+DT G   
Sbjct: 378 TNAGKSSLLNALCGKRASDRVLAENKLFATLDPTTRKLDLPCPGARPERLLITDTVGFIR 437

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-----------FIFIGTK 328
                  E  + T  E  +AD++LL+ ++           +               I  +
Sbjct: 438 DLPAPLVEAFRATLEEALDADVLLLVIDLADPDWQGHLDTVHRLLDELGSTALRRVIANQ 497

Query: 329 SDLYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLP 370
            D       E  H         S+  G+GL+ L   ++    +   + P
Sbjct: 498 IDRCEATEIEMIHQREPDALFLSAVRGDGLQGLKQWLREQFFDPGAESP 546


>gi|219130091|ref|XP_002185207.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403386|gb|EEC43339.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 415

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 30/221 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + V + I+ LK  I     Q  +    R       + ++G++NAGKSS+ N L K 
Sbjct: 157 EIDKRLVRDRIITLKQKIDDVQKQRAMHRRGRERTGLPILSLVGYTNAGKSSMLNYLTKA 216

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGY----LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            V   + +  T  D  T  + L GY     V ++DT G  +          + T  EV+ 
Sbjct: 217 GVMAESMLFATL-DPTTRKVKLPGYKTHPEVLLTDTVGFIQKLPTHLVAAFRATLEEVQE 275

Query: 299 ADLILLLKEINS----KKEISF--------PKNIDFIFIGTKSDLYSTYT---------- 336
           AD+++ + ++++    K+E S           +   + +  K DL               
Sbjct: 276 ADVLIHVIDVSNPTWRKQEQSVRSVLADIEASDKPMVRVLNKIDLLDPVEADELRCQAAL 335

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           E++   +S+  G+G+++ ++ ++  +S+    +   +P  K
Sbjct: 336 EDFTVAVSALEGDGMQDFVSVVEDAMSSLLVPIEVELPYSK 376


>gi|120404786|ref|YP_954615.1| GTP-binding protein Era [Mycobacterium vanbaalenii PYR-1]
 gi|119957604|gb|ABM14609.1| GTP-binding protein Era [Mycobacterium vanbaalenii PYR-1]
          Length = 305

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 89/239 (37%), Gaps = 31/239 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    VAI ++ P TTR  +   +  + + + + DT G
Sbjct: 8   RSGF-VCFVGRPNTGKSTLTNALVGTKVAITSNRPQTTRHTIRGIVHRDEFQIVLVDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIG 326
           +     ++ +   +         D+I +    + K          +  +       I I 
Sbjct: 67  LHRPRTLLGQRLNELVKDTYSEVDVIGMCIPADEKIGPGDRWIYEQIRAVAPRTTLIAIV 126

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D  S                 +     +S+ +G  L+ LI+ + S L       P  
Sbjct: 127 TKIDKVSKDRVGEQLLAVSELFGPDADIVPVSATSGTQLDVLIDVLVSKLPPGPAFYPDG 186

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
             + +     +++ +R   +  + + +    +           + +  G  D + L+D+
Sbjct: 187 ELTDEPEEVLMAELIREAALEGVRD-ELPHSLAVV-----IDEVEERPGRPDDDPLIDV 239


>gi|51891490|ref|YP_074181.1| putative GTPase [Symbiobacterium thermophilum IAM 14863]
 gi|51855179|dbj|BAD39337.1| putative GTPase [Symbiobacterium thermophilum IAM 14863]
          Length = 413

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 21/174 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I   G  NAGKSSL NAL+++ V++V+ +PGTT D +   ++L     V + DTAG
Sbjct: 10  QRLHIAFFGRRNAGKSSLINALSRQAVSLVSPVPGTTTDPVRRPMELHPLGPVVLIDTAG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTK 328
           I +  D+     ++R+F  ++  DL +L      +   +          +    +   TK
Sbjct: 70  IDDEGDLGRLR-VERSFQVLDQTDLAVLAVPAGEEPGEAEERLVAELKRRGTPAVGAVTK 128

Query: 329 SDLYSTYTEE----------YDHLISSFTGE-GLEELINKIKSILSNKFKKLPF 371
           +DL                 +     S  G+ G+  L  +I +       ++P 
Sbjct: 129 ADLDPAGARRQAARLEERFGFSFCACSCIGQPGVAALRQRIIAAAPVDPTEVPL 182


>gi|189463402|ref|ZP_03012187.1| hypothetical protein BACCOP_04121 [Bacteroides coprocola DSM 17136]
 gi|189429831|gb|EDU98815.1| hypothetical protein BACCOP_04121 [Bacteroides coprocola DSM 17136]
          Length = 418

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 89/216 (41%), Gaps = 18/216 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +LN +  LK  + + I   K  +    G   ++ ++G++N GKS+L N LAK +
Sbjct: 182 EMDRRIILNRMALLKQRL-AEIDTQKSTQRKNRGRLIRVALVGYTNVGKSTLMNLLAKSE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + +E     +SDT G          +  K T  EV  ADL+L
Sbjct: 241 V-FAENKLFATLDTTVRKVIIENLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLL 299

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            + +I+    +++I                 + +  K D Y TY E+ +  ++  T E +
Sbjct: 300 HVVDISHPDFEEQIQVVDKTIADLGAGGKPTMIVFNKIDAY-TYVEKAEDDLTPKTKENI 358

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
             L   + + ++       F    +K ++  L + V
Sbjct: 359 -TLEELMHTWMAKMNDNCIFISARNKTNIDELKEIV 393


>gi|148559818|ref|YP_001259032.1| GTP-binding proten HflX [Brucella ovis ATCC 25840]
 gi|148371075|gb|ABQ61054.1| GTP-binding proten HflX [Brucella ovis ATCC 25840]
          Length = 490

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 166 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 222

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 223 KILRIKRELETVVRPRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 281

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 282 FATLDPPLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 341

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------------DHL 342
                             I    +   + +  K D       E                 
Sbjct: 342 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRIAAAGSEEGRPIP 401

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 402 VSAITGEGVDRLLSLIETRIAGALGSVGLVLSPFDLHL 439


>gi|159039359|ref|YP_001538612.1| GTP-binding protein Era [Salinispora arenicola CNS-205]
 gi|157918194|gb|ABV99621.1| GTP-binding protein Era [Salinispora arenicola CNS-205]
          Length = 300

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 82/218 (37%), Gaps = 23/218 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
              R G+    +G  NAGKS+L NA+  + +AI +  P TTR V+   L      + + D
Sbjct: 9   RPYRAGFG-CFVGRPNAGKSTLTNAIVGQKIAITSSKPQTTRHVIRAVLHRPDSQLVLVD 67

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
           T G+     ++ +             D+I L    +                     + +
Sbjct: 68  TPGLHRPRTLLGERLNDLVRQTWSEVDVIGLCVPADEPIGRGDRFISGELAELKATVLAV 127

Query: 326 GTKSDLYS---------TYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            TK+DL             +E  D      +S+ +G+ ++ L++ +   L    +  P  
Sbjct: 128 VTKTDLVDRKRLAEQLVAVSELADFAEVVPVSAVSGQQIDTLVDVMTRYLPESPQLYPDD 187

Query: 373 IPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL 409
           + +       +++ +R   +  + +E    + ++ E +
Sbjct: 188 MLTEDPEQVLVAELIREAALEGVRDELPHSIAVVVEEM 225


>gi|15643293|ref|NP_228337.1| hypothetical protein TM0527 [Thermotoga maritima MSB8]
 gi|4981040|gb|AAD35612.1|AE001728_13 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 406

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 97/249 (38%), Gaps = 22/249 (8%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
           ++L+ +   I          +V     K  +  +     +I    +  +   + +    +
Sbjct: 130 EELSRLGGGIGTRGPGEPLLEVLRRHIKNRIAQLRKRLKEIEQERNTQRKQRLEKKIPHV 189

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            I+G++NAGKS+L   L   DV  V D    T + +T  L L+ G ++ +SDT G     
Sbjct: 190 SIVGYTNAGKSTLLKVLTDSDV-YVADKLFATLEPVTRRLKLKSGRVILVSDTVGFIRKL 248

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTKS 329
                   K T  E++ +D+++ L + +               E      I  I +  K 
Sbjct: 249 PHTIVSAFKATLEEIKYSDVLIHLVDASDPYLEEKMKASEKVLEEIGADKIPRILVFNKI 308

Query: 330 DLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR-HLY 381
           DL      E           IS+    GL++L+++++ ++S +  +    +P  K   +Y
Sbjct: 309 DLCPRERIETLKWKYPEALFISAEKRIGLDQLLDRLEEVISQRDVQETLKVPLEKIGQIY 368

Query: 382 HLSQTVRYL 390
            L   +  L
Sbjct: 369 ALKDRLEIL 377


>gi|325916037|ref|ZP_08178327.1| GTP-binding proten HflX [Xanthomonas vesicatoria ATCC 35937]
 gi|325537713|gb|EGD09419.1| GTP-binding proten HflX [Xanthomonas vesicatoria ATCC 35937]
          Length = 439

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 98/288 (34%), Gaps = 29/288 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W          I        + +      ++ +  +      +   
Sbjct: 126 LAQLRHMATRLVRGWTHLERQRGGSIGLRGPGETQLETDRRLLQKRVEQLQQRLEKVEVQ 185

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +   +     +I ++G++NAGKS+LFNAL   + A V D    T D     + L G
Sbjct: 186 RTQMRRARMRSELPRIALVGYTNAGKSTLFNALTGAE-AYVADQLFATLDPTVRRIALPG 244

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEI 314
               ++DT G             + T  E  +ADL+L + +            ++   + 
Sbjct: 245 GSAILADTVGFVRDLPHQLVAAFRSTLSEARDADLLLHIVDAADPLREERILQVDEVLQA 304

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSI 361
               ++  + +  K D        +D               +S+  G GL+EL + +   
Sbjct: 305 VGAGDLPQLLVFNKIDKIDGAEVRHDAQDGIPDRARRERVWVSARDGRGLQELQHALGQR 364

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           L  +       +PS       L   +  LE+    + D    ++  +L
Sbjct: 365 LDLRHLTGQLRLPS---SAGRLRSKLHQLEVVRNEQSDEDGWLLEVDL 409


>gi|284989127|ref|YP_003407681.1| GTP-binding proten HflX [Geodermatophilus obscurus DSM 43160]
 gi|284062372|gb|ADB73310.1| GTP-binding proten HflX [Geodermatophilus obscurus DSM 43160]
          Length = 384

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 23/162 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G++NAGKS+L N LA  DV +   +  T    +      +G    ++DT G     
Sbjct: 224 VALTGYTNAGKSALLNRLAGADVLVQDALFATLDPTVRRTRTPDGRPYTLTDTVGFVRHL 283

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGTKS 329
                +  + T  EV +ADL+L + + ++   +               ++   +    K 
Sbjct: 284 PHQLVDAFRSTLEEVVDADLVLHVVDASAPDAMDQVTAVRGVLHEIGARDHPELLALNKV 343

Query: 330 D---------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           D         L + Y +      S+ TGEG EEL   I   L
Sbjct: 344 DVAPEGWLAALRAAYPDAVPV--SALTGEGAEELRRAIGERL 383


>gi|262377478|ref|ZP_06070700.1| GTP-binding protein HflX [Acinetobacter lwoffii SH145]
 gi|262307534|gb|EEY88675.1| GTP-binding protein HflX [Acinetobacter lwoffii SH145]
          Length = 446

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 126/354 (35%), Gaps = 56/354 (15%)

Query: 123 IDLLEAESLADLISSETEMQRRLSM-------EGMSGELSSLYGQWID---KLTHIRSFI 172
           +   +A +L  +I      +  L +           G+L     Q      +L   R  +
Sbjct: 85  LTPAQARNLEQVIKCRVVDRTELILDIFAQRARTYEGKLQVELAQLQHLSSRLIRSRGNL 144

Query: 173 EADLDF----SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVIL 225
           ++           E +     + +   +  LK  I         G + R       + ++
Sbjct: 145 DSQKGGIGLRGPGETLLETDRRLLRIRMGQLKARIDKVRQTRMQGRVARQKAAVPTVSLV 204

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIV 284
           G++NAGKS+LFN LA  DV    D    T D     L+ +G   + ++DT G        
Sbjct: 205 GYTNAGKSTLFNLLANSDV-YAADQLFATLDPTLRRLEWDGIGNLVLADTVGFVRNLSHS 263

Query: 285 EKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----------NIDFIFIGTKSD--- 330
             E  K T  E   A L+L + + +S + +   +           ++  + +  K D   
Sbjct: 264 LVESFKATLEETVEATLLLHVIDSSSPEMLEQIEAVEKVLKEIGADVPILQVYNKIDCSG 323

Query: 331 -----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI------PSHKRH 379
                +Y    E     +S+ +GEG++ L   +   L  + +     +        ++ +
Sbjct: 324 EEAKIIYRRPGEPERVYVSAHSGEGIDLLRKAVHESLMGQLQSFDLILKPAYGKLRNQLY 383

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD--VEQLLDI 431
             ++ Q+  Y +   L+           ++R+A   L ++       V+++L  
Sbjct: 384 SLNVIQSEHYDDEGQLHL----------HIRIAPQKLEQLIKQAHLPVDEILGK 427


>gi|296104241|ref|YP_003614387.1| GTP-binding protein Era [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058700|gb|ADF63438.1| GTP-binding protein Era [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 301

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKTPVILAVNKVDNVQ 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   HL               S+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQWLGSQMNFLDIVPLSAETGLNVDTIAGIVRKHLPEATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|317491019|ref|ZP_07949455.1| GTP-binding protein Era [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920566|gb|EFV41889.1| GTP-binding protein Era [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 301

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 70/199 (35%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E     +  E+   K        I    K D   
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTHWTADDEMVVNKLRDLKAPVILAINKVDNVQ 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  H+               S+  G  ++ + + ++  L       P    + +  
Sbjct: 131 DKAALLPHIQFLSEQMNFMDVVPISAEKGTNVDTIASIVRKKLPEAIHHFPEEYITDRSQ 190

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 191 RFMASEIIREKLMRFLGEE 209


>gi|161612650|ref|YP_001586615.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|189037666|sp|A9N1T2|ERA_SALPB RecName: Full=GTPase Era
 gi|161362014|gb|ABX65782.1| hypothetical protein SPAB_00346 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 301

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLANQMNFLDIVPISAETGMNVDTIAGIVRKHLPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|152971422|ref|YP_001336531.1| GTP-binding protein Era [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238896017|ref|YP_002920753.1| GTP-binding protein Era [Klebsiella pneumoniae NTUH-K2044]
 gi|262040302|ref|ZP_06013553.1| GTP-binding protein Era [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330007687|ref|ZP_08306026.1| ribosome biogenesis GTPase Era [Klebsiella sp. MS 92-3]
 gi|189037651|sp|A6TCI0|ERA_KLEP7 RecName: Full=GTPase Era
 gi|150956271|gb|ABR78301.1| GTP-binding protein Era [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238548335|dbj|BAH64686.1| GTP-binding protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259042411|gb|EEW43431.1| GTP-binding protein Era [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535368|gb|EGF61850.1| ribosome biogenesis GTPase Era [Klebsiella sp. MS 92-3]
          Length = 301

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTQDDEMVLNKLRDAKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGTNVDTIAAIVRKHLPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|161881|gb|AAA98602.1| ORF 1 [Theileria parva]
          Length = 435

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 18/160 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKD-------VAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
             + ++G SN GKS LFN++  +         +IV++ PGTTRD       L+G  + + 
Sbjct: 1   MYVSLIGRSNVGKSRLFNSILAQAGKASNILKSIVSEKPGTTRDSKQAQFYLKGNKITLV 60

Query: 273 DTAGI-------RETDDIVEKEGIKR-TFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
           DT G        ++ +D    + I+R T   V +++LI  + + +  + ++         
Sbjct: 61  DTGGFEAFLTKTQKREDSTLSKIIERETHKAVRSSNLIFFVLDGS--EGVTPLDVHLAEK 118

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           +    D  +    E   +I+    +G +E    +   LS+
Sbjct: 119 LRNWLD-QAHIKPEVKLVINKLENKGSDEYYEALSDCLSD 157


>gi|71662850|ref|XP_818425.1| small GTP-binding protein [Trypanosoma cruzi strain CL Brener]
 gi|70883677|gb|EAN96574.1| small GTP-binding protein, putative [Trypanosoma cruzi]
          Length = 571

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 71/192 (36%), Gaps = 36/192 (18%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR---------------NGYKIVILGHSNAGK 232
             +E +     + NDIS  +      +  R                  ++ I+G  N+GK
Sbjct: 56  DWREQVRRSGGVLNDISPALPDSNRTDDQRKRVAGWQPVVKLLGDQRLRVAIVGRMNSGK 115

Query: 233 SSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
           SSLFN L++         IV D  G TRD +     LEG    I DT G+     + E  
Sbjct: 116 SSLFNLLSEDPTMPNRKNIVRDFDGITRDSVEGHAQLEGMHFTIIDTPGMVNGKLVEE-- 173

Query: 288 GIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEY 339
                F  VE AD  + +  ++     +          K +    +  K DL     +E 
Sbjct: 174 ----AFRTVETADAAIFVTSVDEDLHSAEFDLIHYLQLKCMPTFVLVNKMDLVP--LDEE 227

Query: 340 DHLISSFTGEGL 351
           D ++  + G GL
Sbjct: 228 DRVLERYNGLGL 239



 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 73/189 (38%), Gaps = 28/189 (14%)

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
             +    ++ L HI S  + + D+    D+++ + +   + +  +++             
Sbjct: 253 MEMLAAVLEPLYHIHSMQKVENDW----DIEDLAMQGDESAMEEIRD-----------RN 297

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
                 +I ++G +N+GKSSL N L   + +   D   +TRD + +    +G  VK+ DT
Sbjct: 298 CADRFIRIALVGRTNSGKSSLINRLVGFERSRAVDEKNSTRDPVELSCIYKGRKVKLIDT 357

Query: 275 AGIR----ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF---------PKNID 321
           AG+       D          +  E+  A +++++ +        +          +   
Sbjct: 358 AGLTRHRFRADRDFIGRIHDLSVNEIRYAHVVIVVFDATEGHPNKYDMAVLHSVAAEGRP 417

Query: 322 FIFIGTKSD 330
           F+    K D
Sbjct: 418 FLLCANKWD 426


>gi|71027325|ref|XP_763306.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350259|gb|EAN31023.1| hypothetical protein TP03_0288 [Theileria parva]
          Length = 700

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 18/160 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKD-------VAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
             + ++G SN GKS LFN++  +         +IV++ PGTTRD       L+G  + + 
Sbjct: 1   MYVSLIGRSNVGKSRLFNSILAQAGKASNILKSIVSEKPGTTRDSKQAQFYLKGNKITLV 60

Query: 273 DTAGI-------RETDDIVEKEGIKR-TFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
           DT G        ++ +D    + I+R T   V +++LI  + + +  + ++         
Sbjct: 61  DTGGFEAFLTKTQKREDSTLSKIIERETHKAVRSSNLIFFVLDGS--EGVTPLDVHLAEK 118

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           +    D  +    E   +I+    +G +E    +   LS+
Sbjct: 119 LRNWLD-QAHIKPEVKLVINKLENKGSDEYYEALSDCLSD 157


>gi|307128555|ref|YP_003880585.1| GTP-binding protein Era [Candidatus Sulcia muelleri CARI]
 gi|306483017|gb|ADM89887.1| GTP-binding protein Era [Candidatus Sulcia muelleri CARI]
          Length = 270

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 14/134 (10%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I ++G+ + I+G+ N GKS+L NA+  K+++IVT    TTR+ +   L+L    +   DT
Sbjct: 2   IHKSGF-VKIIGYPNVGKSTLINAIIGKNISIVTYKANTTRNNIIGILNLYNSQIIFYDT 60

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKS 329
            GI   ++ ++K         +  AD+++ + EI    E     I+  K    I +  K 
Sbjct: 61  PGIIINNNYIKKY--------ITEADIVIYITEIGKNNELFFKKININKFKFTIILLNKI 112

Query: 330 DLYSTYTEEYDHLI 343
           D Y  Y  + +   
Sbjct: 113 DKYQNYILKNEIFN 126


>gi|311030172|ref|ZP_07708262.1| GTP-binding proten HflX [Bacillus sp. m3-13]
          Length = 422

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 121/323 (37%), Gaps = 43/323 (13%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           NG++   +  +L+ ++++      Q  L   +       G+L     Q            
Sbjct: 85  NGELAPSQNRNLSKILNARIIDRTQLILDIFAQRAKSKEGKLQVELAQLQYLLPRLGGKG 144

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
            +L+ +   I        + +         + DI      I SH  + +        +++
Sbjct: 145 VELSRLGGGIGTRGPGETKLESDRRHINRRIVDIKTQLTSIVSHRERYRERRKRNQAFQL 204

Query: 223 VILGHSNAGKSSLFNALAK----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            ++G++NAGKS++FN L +    ++  +   +  TTR V    +   G+   ++DT G  
Sbjct: 205 SLVGYTNAGKSTIFNRLTEAGTFEENLLFATLDPTTRKV----MMPSGFNALLTDTVGFI 260

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIG 326
           +          + T  EV  ADLIL + + +S   ++  K             +  + I 
Sbjct: 261 QDLPTSLVAAFRSTLEEVTEADLILHVVDSSSPDHVNHEKTVDKLLKELGVEGVPVLTIY 320

Query: 327 TKSD-----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            K D         Y +E  H IS+     +  LINKI+S++  + +     +PS +  + 
Sbjct: 321 NKKDQTAEGFTPAYNQEILH-ISALDPMDITLLINKIESLIKVQMEPYHIVVPSSEGKMI 379

Query: 382 HLSQTVRYLEMASLNEKDCGLDI 404
              +    L      E+    ++
Sbjct: 380 AQLKQETVLSTMEFTEETESYEL 402


>gi|229820244|ref|YP_002881770.1| GTP-binding protein Era [Beutenbergia cavernae DSM 12333]
 gi|229566157|gb|ACQ80008.1| GTP-binding protein Era [Beutenbergia cavernae DSM 12333]
          Length = 312

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +    + E  R G+   ++G  NAGKS+L NAL    VAI +  P TTR  +   + L  
Sbjct: 6   LVSPDVPEGFRAGF-ASVVGRPNAGKSTLVNALVGTKVAITSGRPQTTRHTVRGIVHLPD 64

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
             + + DT G+     ++ +         +   D+I      + K
Sbjct: 65  GQLVLVDTPGLHRPRTLLGRRLNDLVLATLAEVDVIAFCLPADQK 109


>gi|261340867|ref|ZP_05968725.1| GTP-binding protein Era [Enterobacter cancerogenus ATCC 35316]
 gi|288317298|gb|EFC56236.1| GTP-binding protein Era [Enterobacter cancerogenus ATCC 35316]
          Length = 301

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKTPVILAVNKVDNVQ 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   HL               S+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQWLGSQMNFLDIVPLSAETGLNVDTIAGIVRKHLPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|172034949|ref|YP_001801450.1| ferrous iron transport protein B [Cyanothece sp. ATCC 51142]
 gi|171696403|gb|ACB49384.1| ferrous iron transport protein B [Cyanothece sp. ATCC 51142]
          Length = 664

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 4/168 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  N GKS+LFN +     A V + PG T D+L  +++LEG  V+  D  GI + 
Sbjct: 19  RVGVLGMPNVGKSTLFNQITGAS-AFVGNWPGVTVDLLEAEVELEGETVEFVDLPGIYDL 77

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +   E E + + F E    +L+L++       ++I     +  + I     L     +E 
Sbjct: 78  EGYSEDERVVQDFFERFPVNLVLVVLNAGQIDRQIRLALQVKALGIPGI--LILNMVDEA 135

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
           +H       + LEE +    +++S K+ +           +   SQ V
Sbjct: 136 NHFGIDIDSQKLEEKLGMPVALVSAKYNRGILPAKHKISQVLAQSQAV 183


>gi|163868472|ref|YP_001609681.1| GTP-binding protein HflX [Bartonella tribocorum CIP 105476]
 gi|161018128|emb|CAK01686.1| GTP-binding protein HflX [Bartonella tribocorum CIP 105476]
          Length = 445

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 86/221 (38%), Gaps = 29/221 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + +   I+ ++ ++ + +    L    R   +   + ++G++NAGKS+LFN L+  
Sbjct: 181 EADRRLLQEKIIRIRRELETVVKTRALHRAKRKKTSYPVVALVGYTNAGKSTLFNRLSGA 240

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           DV     +  T    L   +   G  + +SDT G             + T  EV  ADLI
Sbjct: 241 DVLAKNMLFATLDPTLRKVVLPHGKTILLSDTVGFISNLPTNLIAAFRATLEEVVEADLI 300

Query: 303 LLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYT----------- 336
           L +++               + S  +I        I +  K D+                
Sbjct: 301 LHVRDMLDLDHRTHAQDVLEVLSSLDIDIDDTEHIIEVWNKIDMVDEQALNVLQTSAKTR 360

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                ++S+  G+GL++L+  I+  +  + + + + +  H+
Sbjct: 361 LNPALIVSALKGDGLDQLLKTIEKRIFGELQSIEYLLKPHE 401


>gi|56412544|ref|YP_149619.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62181145|ref|YP_217562.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|167549388|ref|ZP_02343147.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168232158|ref|ZP_02657216.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168238325|ref|ZP_02663383.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168261369|ref|ZP_02683342.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168466659|ref|ZP_02700513.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168821430|ref|ZP_02833430.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194469999|ref|ZP_03075983.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194737392|ref|YP_002115643.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197248494|ref|YP_002147538.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197361479|ref|YP_002141115.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198242030|ref|YP_002216647.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200386770|ref|ZP_03213382.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204929711|ref|ZP_03220785.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205353676|ref|YP_002227477.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857987|ref|YP_002244638.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224582878|ref|YP_002636676.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912698|ref|ZP_04656535.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|81309622|sp|Q57LD1|ERA_SALCH RecName: Full=GTPase Era
 gi|81677940|sp|Q5PIG4|ERA_SALPA RecName: Full=GTPase Era
 gi|226741228|sp|B5F1G0|ERA_SALA4 RecName: Full=GTPase Era
 gi|226741229|sp|B5FRC4|ERA_SALDC RecName: Full=GTPase Era
 gi|226741230|sp|B5QTU7|ERA_SALEP RecName: Full=GTPase Era
 gi|226741231|sp|B5RD48|ERA_SALG2 RecName: Full=GTPase Era
 gi|226741234|sp|B5BAT1|ERA_SALPK RecName: Full=GTPase Era
 gi|226741235|sp|B4TS13|ERA_SALSV RecName: Full=GTPase Era
 gi|254783662|sp|C0PYG8|ERA_SALPC RecName: Full=GTPase Era
 gi|56126801|gb|AAV76307.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62128778|gb|AAX66481.1| GTPase believed to be involved in coordination of cell cycle,
           energy metabolism, cell division [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|194456363|gb|EDX45202.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194712894|gb|ACF92115.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195630802|gb|EDX49394.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197092955|emb|CAR58385.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197212197|gb|ACH49594.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197288837|gb|EDY28210.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197936546|gb|ACH73879.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199603868|gb|EDZ02413.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204321430|gb|EDZ06630.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205273457|emb|CAR38434.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205325335|gb|EDZ13174.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205333611|gb|EDZ20375.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205341982|gb|EDZ28746.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205349353|gb|EDZ35984.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206709790|emb|CAR34142.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224467405|gb|ACN45235.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|320087081|emb|CBY96850.1| GTP-binding protein era homolog [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322613350|gb|EFY10292.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620446|gb|EFY17311.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625086|gb|EFY21915.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629470|gb|EFY26246.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633857|gb|EFY30596.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635463|gb|EFY32174.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639861|gb|EFY36540.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644253|gb|EFY40797.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649945|gb|EFY46365.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654872|gb|EFY51189.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658200|gb|EFY54466.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661728|gb|EFY57946.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669709|gb|EFY65855.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673284|gb|EFY69389.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322674927|gb|EFY71014.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682950|gb|EFY78968.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685611|gb|EFY81606.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322715635|gb|EFZ07206.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323191961|gb|EFZ77199.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200406|gb|EFZ85487.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201306|gb|EFZ86373.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208376|gb|EFZ93316.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211548|gb|EFZ96386.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215980|gb|EGA00712.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221761|gb|EGA06169.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225631|gb|EGA09858.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229349|gb|EGA13473.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235336|gb|EGA19420.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237478|gb|EGA21541.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245233|gb|EGA29234.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248807|gb|EGA32734.1| GTPase Era [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323254013|gb|EGA37834.1| GTPase Era [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323259061|gb|EGA42709.1| GTPase Era [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323261984|gb|EGA45549.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267767|gb|EGA51248.1| GTPase Era [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323269674|gb|EGA53126.1| GTPase Era [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
 gi|326624402|gb|EGE30747.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326628780|gb|EGE35123.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 301

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGMNVDTIAGIVRKHLPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|322807907|emb|CBZ05482.1| putative GTP-binding protien TM0445 [Clostridium botulinum H04402
           065]
          Length = 399

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 19/175 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           N   I  +G +N+GKSSL NA+  +D++IV+ I GTT D ++  ++L     V  +DTAG
Sbjct: 8   NRIHITFIGKTNSGKSSLMNAIIGQDISIVSPIEGTTTDPVSKSMELIPLGPVLFTDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           + +  ++  K  I++T   +   D  + +          + K        NI +I +  K
Sbjct: 68  LEDNTELG-KVRIEKTLNTLLKTDFAIYVMSAKDIDINLYKKTINKFKEQNISYITVINK 126

Query: 329 SDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            D+             E    +SS     +  L + I   LS    K   +I  +
Sbjct: 127 MDIIEKNKIDNIKKIIEDPIFVSSNDINSILNLKDLIIKNLSK--TKEDDTIIGN 179


>gi|298249597|ref|ZP_06973401.1| GTP-binding proten HflX [Ktedonobacter racemifer DSM 44963]
 gi|297547601|gb|EFH81468.1| GTP-binding proten HflX [Ktedonobacter racemifer DSM 44963]
          Length = 438

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 93/236 (39%), Gaps = 20/236 (8%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++     +  +++I      +  H    +          + ++G++NAGKS+LFNAL   
Sbjct: 176 EIDRRRIRRRMSEIKRELEAVRQHRQVSRQQRASHALPVVAVIGYTNAGKSTLFNALTDA 235

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           + A+V +    T D  T  L L       ++DT G  +          + T  EV +AD+
Sbjct: 236 N-ALVENKLFATLDPTTRQLTLPNNQEALLTDTVGFIQKLPTDLVAAFRATLEEVTDADI 294

Query: 302 ILLLKEINSK------KEI------SFPKNIDFIFIGTKSDLYSTYTE------EYDHLI 343
           +L + +I+        +E+         +++  I    K DL     +           I
Sbjct: 295 LLEVVDISHPNMHEQHEEVLRTLKDLHAEHLPRITALNKIDLLGKTPQVDTSFFPDAVAI 354

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           S+   +GL+ L  K+  +L+     +  ++P  +  L  L     ++E     E+ 
Sbjct: 355 SALQRQGLDTLCEKMSQVLAVNMVPICVTVPYDRGELVDLFHRKGHIEQELHEEEG 410


>gi|290476133|ref|YP_003469033.1| GTPase believed to be involved in coordination of cell cycle,
           energy metabolism, cell division [Xenorhabdus bovienii
           SS-2004]
 gi|289175466|emb|CBJ82269.1| GTPase believed to be involved in coordination of cell cycle,
           energy metabolism, cell division [Xenorhabdus bovienii
           SS-2004]
          Length = 301

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGVYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E     +  E+   K    +   I    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTHWTADDEMVVNKLRNLHCPVILAINKVDNVT 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  H               IS+  G  ++ +   +++ +       P    + +  
Sbjct: 131 DKAILLPHIGFLSKQMNFLDVVPISAEKGMNVDTIAKIVRAHIPEAGHHFPDDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|163939672|ref|YP_001644556.1| GTP1/OBG protein [Bacillus weihenstephanensis KBAB4]
 gi|163861869|gb|ABY42928.1| GTP1/OBG protein [Bacillus weihenstephanensis KBAB4]
          Length = 419

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 101/270 (37%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAK------KDVAI 246
           I  L  ++ + ++Q +     R       + ++G++NAGKS++ N + +      +    
Sbjct: 171 IAALNKELEALVAQRQTQRKQRKKNEMPVVSLVGYTNAGKSTIMNTMLEIFNGTVEKQVF 230

Query: 247 VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KEINSKKEISFP------------KNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            + ++                   +NI  I+   KSDL        +E    +S+    G
Sbjct: 291 VDYSNPNYEQLIDITNETLKKIGVENIPTIYAYNKSDLVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  ++S +  ++ K    IP  +  +
Sbjct: 351 IEELVEVVRSHIYKEYTKCEMLIPYDQGQV 380


>gi|325299958|ref|YP_004259875.1| GTP-binding proten HflX [Bacteroides salanitronis DSM 18170]
 gi|324319511|gb|ADY37402.1| GTP-binding proten HflX [Bacteroides salanitronis DSM 18170]
          Length = 421

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 90/220 (40%), Gaps = 23/220 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +LN +  LK  + + I   K  +    G   ++ ++G++N GKS+L N LAK D
Sbjct: 182 EMDRRIILNRMSLLKQRL-AEIDTQKSTQRKNRGRLIRVALVGYTNVGKSTLMNLLAKSD 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     +SDT G          +  K T  EV  ADL++
Sbjct: 241 V-FAENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLV 299

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            + +I+    +++I                 + +  K D Y+   ++ D  ++  T E +
Sbjct: 300 HVVDISHSDFEEQIQVVDKTVSELGAGGKPTMIVFNKIDAYTYIEKDAD-DLTPKTKENV 358

Query: 352 EELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYL 390
                 ++ ++     K+  + I    R+  +L +  R L
Sbjct: 359 -----TLEELMHTWMAKMNDNCIFISARNKTNLEELRRLL 393


>gi|295097901|emb|CBK86991.1| GTP-binding protein Era [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 301

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKTPVILAVNKVDNVQ 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   HL               S+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQWLGSQMNFLDIVPLSAETGLNVDTIAGIVRKHLPEATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|209525601|ref|ZP_03274139.1| small GTP-binding protein [Arthrospira maxima CS-328]
 gi|209493934|gb|EDZ94251.1| small GTP-binding protein [Arthrospira maxima CS-328]
          Length = 222

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 6/141 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
            + N   + ++G  N GKS LFNAL     A V++ PGTT D+ T D+ +    + I DT
Sbjct: 35  AVSNKPTVALVGSPNVGKSVLFNALT-SHYATVSNYPGTTVDISTGDMIIGDKAIAIIDT 93

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI--GTKSDLY 332
            G+     I E+E + R  L     DL++ +      + +    N+    +  G    L 
Sbjct: 94  PGMYSLLPITEEEKVGRDLLMTRGIDLVIHVVNA---QHLGRMLNLTLQLLEAGLPVLLA 150

Query: 333 STYTEEYDHLISSFTGEGLEE 353
               +E DHL      E LEE
Sbjct: 151 VNLIDEADHLGIKINAEDLEE 171


>gi|183219489|ref|YP_001837485.1| GTP-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
 gi|189909632|ref|YP_001961187.1| GTPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167774308|gb|ABZ92609.1| GTPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167777911|gb|ABZ96209.1| GTP-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 518

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 19/233 (8%)

Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213
           L +   +  D ++ +   I        + ++ N   +E +N +     D+       +  
Sbjct: 279 LKNRLSELDDNMSRLTGGIGGRGPGETKLEIGNRRVEEKINRLENELKDLKRRRELNRKS 338

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKIS 272
                   + I+G++NAGKS+L NAL    V I  D    T D  T  +   E   + IS
Sbjct: 339 RSRNEIPIVGIVGYTNAGKSTLLNALTNSTV-IAEDKLFATLDPTTRRIRFPEEREIIIS 397

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS------------FPKNI 320
           DT G          +  K T  E+ +ADL+L + ++ +                     I
Sbjct: 398 DTVGFIHDLPPDLSQAFKATLEELGDADLLLHVVDVTNPNYTEQMDAVDTILNSLHLNEI 457

Query: 321 DFIFIGTKSDLYSTYTEEYDHLI-----SSFTGEGLEELINKIKSILSNKFKK 368
             + +  K+D     T +          S+ T EGL +L++ I+  +  K ++
Sbjct: 458 PRMVVFNKADGLDEETHDILQKNGALLVSAVTREGLSKLLDLIEYEIWKKKEQ 510


>gi|302797579|ref|XP_002980550.1| hypothetical protein SELMODRAFT_112935 [Selaginella moellendorffii]
 gi|300151556|gb|EFJ18201.1| hypothetical protein SELMODRAFT_112935 [Selaginella moellendorffii]
          Length = 471

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 15/160 (9%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +   ++ I G +N GKS++ N+L +K+  +    PG TRD +TID +     V++ DTAG
Sbjct: 192 QKPLRLAIAGRTNVGKSTVINSLLRKERVLTGPEPGLTRDAITIDFEFNKKPVRLVDTAG 251

Query: 277 IRETDDIVEKEGIKRTFLE---VENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYS 333
             +   + E        L    +  A ++ ++ +    +EI+  K        +++ L  
Sbjct: 252 WIQRSQLEEGPMALSAMLARRSLMTAHVVAIVLDA---QEIAHSK---MTLRNSEAALAR 305

Query: 334 TYTEE------YDHLISSFTGEGLEELINKIKSILSNKFK 367
             T+E        + +    G+   +L  K+   +  + +
Sbjct: 306 WVTDEGRALIIVVNKMDVLKGQKNADLRKKLMEAVPKEIQ 345



 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 27/175 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIP--GTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           ++ILG  N GKSSL+N L  +  AIV D P    TRD+      L     K+ D+AG+  
Sbjct: 4   VIILGRPNVGKSSLYNRLVHRKEAIVYDTPDSHVTRDIREGSAKLSDLRFKVFDSAGLET 63

Query: 280 TDDIVEKEGIKRTFLE--VENADLILLLKE-------INSKKEISFPK---NIDFIFIGT 327
           +++               +      L L +       ++ +  + F K   N+  + +  
Sbjct: 64  SEEGATVLARTTGLTATFLRTCHAALFLIDGRAGVSPLDKEAVMWFRKLNLNLPVVLVVN 123

Query: 328 KSD-------LYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
           K++       + +   E Y         +S+ TGEGL +L  +++ IL    +KL
Sbjct: 124 KAEKITGDHQIMANIAESYSLGLGDPVPVSAETGEGLADLFQRLQPILDAAKEKL 178


>gi|153955766|ref|YP_001396531.1| hypothetical protein CKL_3152 [Clostridium kluyveri DSM 555]
 gi|146348624|gb|EDK35160.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
          Length = 592

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 120/344 (34%), Gaps = 60/344 (17%)

Query: 134 LISSETEMQRRLSME--GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           +I   T +    +        ++     Q   +L  +                +    K+
Sbjct: 265 IIDRTTLILHIFATRAKSKESKMQVELAQLKYRLARLSGLGIVLSRTGGGIGTRGPGEKK 324

Query: 192 VLNDILFLKN---DISSHISQGK-----LGEIIRNGYKIVILGHSNAGKSSLFNALAK-- 241
           +  D   ++    +I+  + + K       E     Y + ++G++N+GKS+L N L +  
Sbjct: 325 LETDKRHIRERIYEINRELKKIKGVRKVQREKRNEIYNVSLVGYTNSGKSTLRNKLCEIA 384

Query: 242 -------KDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTF 293
                  KD     D+   T D  T  ++L +G  + I+DT G          E  K T 
Sbjct: 385 VPKESVVKDKVFEADMLFATLDTTTRAVELKDGRTITITDTVGFINKLPHDLVEAFKSTL 444

Query: 294 LEVENADLILLLKEINSKKEISF------------PKNIDFIFIGTKS---------DLY 332
            EV  +DL+L + +I+S+                   +   + +  K          D+ 
Sbjct: 445 EEVYYSDLLLHVVDISSEDAYQHIESVDKVLNQLGINDKPVLLVFNKIDKGKTEKIEDIK 504

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
             Y       IS+  G  LEEL+ +I  +L    KK+ + IP  +         V ++  
Sbjct: 505 DKYNGVESIYISAKQGINLEELLERISHMLPQSIKKVEYLIPYTE------QAAVAFIHR 558

Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436
               EK        E+ R     +  +      E++ +  F KF
Sbjct: 559 NCKIEK--------EDYREQGTYISAL----VDEEVYNK-FRKF 589


>gi|229132703|ref|ZP_04261549.1| hypothetical protein bcere0014_16330 [Bacillus cereus BDRD-ST196]
 gi|228650713|gb|EEL06702.1| hypothetical protein bcere0014_16330 [Bacillus cereus BDRD-ST196]
          Length = 419

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 101/270 (37%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAK------KDVAI 246
           I  L  ++ + ++Q +     R       + ++G++NAGKS++ N + +      +    
Sbjct: 171 IAALNKELEALVAQRQTQRKQRKKNEIPVVSLVGYTNAGKSTIMNTMLEIFNGTVEKKVF 230

Query: 247 VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KEINSKKEISFP------------KNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            + ++                   +NI  I+   KSDL        +E    +S+    G
Sbjct: 291 VDYSNPNYEQLIDITNETLKKIGVENIPTIYAYNKSDLVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  ++S +  ++ K    IP  +  +
Sbjct: 351 IEELVEVVRSHIYKEYTKCEMLIPYDQGQV 380


>gi|227875234|ref|ZP_03993376.1| possible GTP-binding protein HflX [Mobiluncus mulieris ATCC 35243]
 gi|227844139|gb|EEJ54306.1| possible GTP-binding protein HflX [Mobiluncus mulieris ATCC 35243]
          Length = 513

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 20/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G++NAGKSSL N L   DV +   +  T    +       G +  ++DT G     
Sbjct: 264 VAIVGYTNAGKSSLLNRLTGADVLVHDALFATLDPSVRKTHTATGRVYTLADTVGFVRRL 323

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-------------ISFPKNIDFIFIGTK 328
                E  + T  E   ADL+L + +  +                I   ++   + +  K
Sbjct: 324 PTQLVEAFRSTLEETAMADLLLHVVDAANPDPMGEIEAVNATLDTIESIRHTPVVMVINK 383

Query: 329 SDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
            D  S  T             +S+ +G+G+E L   I S L    +++
Sbjct: 384 VDAASAPTLALLRRLLPEAVEVSARSGQGIERLQEVIASRLPWPQQRV 431


>gi|260834023|ref|XP_002612011.1| hypothetical protein BRAFLDRAFT_86970 [Branchiostoma floridae]
 gi|229297384|gb|EEN68020.1| hypothetical protein BRAFLDRAFT_86970 [Branchiostoma floridae]
          Length = 526

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  N+GKS+L N L  + V  V+    TTR      L      V   DT G   
Sbjct: 37  VTVAIVGAPNSGKSTLTNRLMGRRVCPVSSKVHTTRRKTLAVLTEGDTQVVFLDTPGFTN 96

Query: 280 TDDIV----EKEGIKRTFLEVENADLILLLKEINSKKE------------ISFPKNIDFI 323
           T        E   +K     +  ADLI ++ +   ++              + PK I  +
Sbjct: 97  TSKAGRHHLENTMVKDPKASMLEADLIAVMVDPTERQSQKKLKWDLRKALYTLPKPIPAV 156

Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGE--GLEELINKIKSILSNKFKKLPFSIPSHKR 378
            I  K+DL    T+  +      TG   G    I + K  L  +   L  ++   ++
Sbjct: 157 LILNKTDLMRHKTKLLEIAAKLTTGVVGGEPIQITEAKKRLIPELSPLEAALIKAQK 213


>gi|203288092|ref|YP_002223107.1| GTP-binding protein [Borrelia recurrentis A1]
 gi|226741171|sp|B5RQ02|ERA_BORRA RecName: Full=GTPase Era
 gi|201085312|gb|ACH94886.1| GTP-binding protein [Borrelia recurrentis A1]
          Length = 290

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 84/213 (39%), Gaps = 23/213 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + I+G  + GKS+L N++    ++I +  P TTR+ +      +   +   DT 
Sbjct: 1   MKSGF-VSIIGRPSTGKSTLLNSICGHQISITSSTPQTTRNKIKGIFTDKRGQIIFIDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGT 327
           G   +        +   +  +   +LI+ + +I  +          I     I+FI    
Sbjct: 60  GFHLSKKNFNIALMNNVYSAIIETELIIYVIDIQDQPGTEENEILTIIQRSKINFIVAIN 119

Query: 328 KSDLYSTYTEEY-------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D++ T  +E                 IS+     +E + +KI   L+      P    
Sbjct: 120 KIDIHKTKEKEIMTFLEEKKIQKNKIIKISAEKQINIETMKDKIYENLNEGPLYYPKEYY 179

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           + ++    +S+ +R + +  L E +    I  E
Sbjct: 180 TDQKINLRISEIIRGVTIKKLKE-ELPYSIYTE 211


>gi|126466463|ref|YP_001041572.1| small GTP-binding protein [Staphylothermus marinus F1]
 gi|126015286|gb|ABN70664.1| small GTP-binding protein [Staphylothermus marinus F1]
          Length = 696

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 19/234 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +   ++ ++G  N GKS+LFN L  + V  V + PG T +    +    G  +   D  G
Sbjct: 3   KEYIEVGVIGQPNVGKSTLFNVLTGRKV-HVANWPGVTVEKHVGERIHRGRRIIFVDLPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSD 330
           I        +E I R ++  +  D++L+L +  + +        +       I + TK D
Sbjct: 62  IYGFSATTIEERIARKYILTQQPDVLLVLVDSLNPERTMYLAIQALEITPRVILVFTKVD 121

Query: 331 ------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                         S   +     +SS TG G+ EL++ I  +   +  +    I  +K 
Sbjct: 122 SVHAHGIHINYRALSNKLDVPVVPVSSATGVGIVELLDTIIDVKEERKGRKTPLIVDYKE 181

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432
               +   V  L   + N     +  +A  L      L +I      E +L+ I
Sbjct: 182 LNPFIDSIVDILREKNGNILGFPIRWVAVRLLEGDEELEQIIWQKMGEDVLERI 235


>gi|251772615|gb|EES53180.1| GTP-binding protein (Era) [Leptospirillum ferrodiazotrophum]
          Length = 335

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 48/91 (52%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L NAL  + V+ V+  P TTR ++      E       DT G  ++ 
Sbjct: 34  VAVVGLPNAGKSTLVNALVGEKVSAVSATPQTTRTLIRGIRTEERGQAIFLDTPGFHQSG 93

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK 312
            ++ ++  +R    +  A ++L + +I SKK
Sbjct: 94  PLLNQQMGERLSAALAEAHVVLWVVDITSKK 124


>gi|160872884|ref|ZP_02063016.1| GTP-binding protein Era [Rickettsiella grylli]
 gi|159121683|gb|EDP47021.1| GTP-binding protein Era [Rickettsiella grylli]
          Length = 294

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 66/190 (34%), Gaps = 22/190 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G  N GKS+L N +  + + I +  P TTRD +              DT GI + 
Sbjct: 10  KIAIIGRPNVGKSTLLNKILGEKLTITSSKPQTTRDQILGIKTDLHTQFIYKDTPGILQN 69

Query: 281 DDIVEKEGIKR-TFLEVENADLILLLKEIN-------SKKEISFPKNIDFIFIGTKSD-- 330
                     R     + + DLI  + E +       +  E   P     I I  K D  
Sbjct: 70  AGRRLSRTFTRSAIQALIDVDLIGFVIEADRWTNEEAAILERIKPLKRPVILIINKVDKI 129

Query: 331 ------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                        Y   +      IS+  G+ ++EL   I   L +     P    + + 
Sbjct: 130 NDKHRLLPFLKCCYQKMSFLAIVPISALKGQNIDELEKVIAKALPHAAFIYPPDQLTDRS 189

Query: 379 HLYHLSQTVR 388
             + + + +R
Sbjct: 190 QRFLVGEFIR 199


>gi|21242485|ref|NP_642067.1| GTP-binding protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107933|gb|AAM36603.1| GTP-binding protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 439

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 96/288 (33%), Gaps = 29/288 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W          I        + +      ++ +  +      +   
Sbjct: 126 LAQLRHMATRLVRGWTHLERQRGGSIGLRGPGETQLETDRRLLQKRVEQLQQRLEKVEVQ 185

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +   +     +I ++G++NAGKS+LFN L   + A V D    T D     + L G
Sbjct: 186 RTQMRRARMRSELPRIALVGYTNAGKSTLFNVLTGAE-AYVADQLFATLDPTVRRIALPG 244

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEI 314
               ++DT G             + T  E  +ADL+L + +            ++   + 
Sbjct: 245 GSAILADTVGFVRDLPHELVAAFRSTLSEARDADLLLHVVDAADPLREERILQVDEVLQA 304

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSI 361
               ++  + +  K D  +      D               +S+  G GLEEL + +   
Sbjct: 305 VGAGDLPQLLVFNKIDKIAGAEVRRDAQDGIPDPARRERVWVSARDGRGLEELQHALGQR 364

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           L  +       +P        L   +  LE+    + D    ++  +L
Sbjct: 365 LDLRHLTGQLRLPP---SAGRLRSRLHQLEVVRNEQSDEEGWLLEVDL 409


>gi|330999637|ref|ZP_08323346.1| GTP-binding protein HflX [Parasutterella excrementihominis YIT
           11859]
 gi|329574143|gb|EGG55719.1| GTP-binding protein HflX [Parasutterella excrementihominis YIT
           11859]
          Length = 387

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 77/223 (34%), Gaps = 24/223 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+  +     Q       R       + ++G++NAGKS+LFN L + 
Sbjct: 166 ELDRRMIATRVKALREQLKKLERQRNTQRKSRQRGEVLTVALVGYTNAGKSTLFNRLTRG 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V     +  T               V +SDT G          E  K T  E   ADL+
Sbjct: 226 GVYAADQLFATLDTTARRCFVGGDVEVVLSDTVGFIRGLPHQLIEAFKSTLDEAAQADLL 285

Query: 303 LLLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTYT--------EEYDHL 342
           L + + ++              E    K+I  + +  K DL                   
Sbjct: 286 LHVVDSSTPAREEQMTEVNKVLEEIGAKDIPQLLVFNKIDLEGRSPFITCAEDGTPKAVG 345

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           IS+  GEG++ L + I+ I   K  + P   P ++  L    +
Sbjct: 346 ISAANGEGIDLLKDAIRQIA-EKEPEEPQEAPDNEDWLAEFER 387


>gi|319404324|emb|CBI77919.1| GTP-binding protein HflX [Bartonella rochalimae ATCC BAA-1498]
          Length = 448

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 83/217 (38%), Gaps = 29/217 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + N I+ ++ ++ + +    L    R       I ++G++NAGKS+LFN L+  
Sbjct: 182 EADRRLLQNKIISIRRELETVVKTRALHRAKRKRIPHPVIALVGYTNAGKSTLFNHLSDS 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V     +  T    L   +   G  V +SDT G             + T  EV  ADLI
Sbjct: 242 NVLAEDMLFATLDPTLRKIVLPHGQTVLLSDTVGFISNLPTHLIAAFRATLEEVIEADLI 301

Query: 303 LLLKEINSKKEISFPKN---------------IDFIFIGTKSDLYSTYTEEY-------- 339
           L +++++     +  ++                  + I  K D    +            
Sbjct: 302 LHVRDVSDPDHYAHAQDVFEILSDLGVDINDTDHIVEIWNKIDTLDQHALGVLQTNSKKM 361

Query: 340 ---DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                +IS+ TG+GL +L+  I+  +    + +   +
Sbjct: 362 LNSALMISALTGKGLSQLLALIEKKIFGDIQSVELIL 398


>gi|221506372|gb|EEE32007.1| GTP-binding protein, putative [Toxoplasma gondii VEG]
          Length = 428

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 110/298 (36%), Gaps = 51/298 (17%)

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS----FIEADLDFSEEE 182
           +AE   D   ++ E   ++S+      +     +  D    + +          +F   E
Sbjct: 128 QAEDTGDA-DADNEGDPQVSLVEQESRMRFWQEEQEDDGLPLLARPFVHAFQPREFLNRE 186

Query: 183 DVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNAL 239
           D+   S ++     +     I++H  +    L ++  N + ++  +GHSN GKSSL NAL
Sbjct: 187 DLPWLSPEQRKYSRILFGKPIAAHPVLVAQTLHKLPHNPWPQVAAVGHSNVGKSSLLNAL 246

Query: 240 A-KKDVAIVTDIPGTTRDVLTID-------LDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
              +DVA     PG TR + T D       +DL GY         ++E   I+ +E   R
Sbjct: 247 MHGRDVARSCSKPGRTRHLFTFDLGNHLSLVDLPGYGFA-RVKPQLKEEWAILIEEYFTR 305

Query: 292 TFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDL------------ 331
           +         +L L +     E        +   KN+ F  + TK+DL            
Sbjct: 306 SKQLRR----VLSLVDATKGVEALDERLWQLLAEKNLPFQVVLTKADLLTARELHAAMFD 361

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                       T    + H +SS    G+ EL   + ++ S+  K+    +   +  
Sbjct: 362 VLSRLQAVEKKETLLHPFVHAVSSRHNHGIPELRASLAAVASDWRKRQGLPLLKFQGQ 419


>gi|167646573|ref|YP_001684236.1| GTP-binding proten HflX [Caulobacter sp. K31]
 gi|167349003|gb|ABZ71738.1| GTP-binding proten HflX [Caulobacter sp. K31]
          Length = 446

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 29/207 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKK 242
               + + ++IL LK ++        L    R       + ++G++NAGKS+LFN L   
Sbjct: 177 ELDRRLIRDNILKLKRELDEVRRTRTLHRSQRKKAPYPTVALVGYTNAGKSTLFNRLTHA 236

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D+   T D    ++ L +G    +SDT G          E  + T  EV+ AD+
Sbjct: 237 TV-VAQDMLFATLDPTLRNVKLPDGRPAILSDTVGFISDLPHELVEAFRATLEEVQEADV 295

Query: 302 ILLLKEINSKKEISFPKNIDFIF---------------IGTKSDLYSTYTEEY------- 339
           +L ++++ +    +  +++  +                +  K DL      E        
Sbjct: 296 VLHVRDVANPDTDAQARDVQVVLAELKVTAEDGKTIIEVWNKIDLVDGEAREILDGQARR 355

Query: 340 --DHLISSFTGEGLEELINKIKSILSN 364
                +S+ TGEG  EL+ ++ +++ +
Sbjct: 356 LGASAVSAVTGEGCAELLKRVGTLIDD 382


>gi|313140093|ref|ZP_07802286.1| GTP-binding protein Era [Bifidobacterium bifidum NCIMB 41171]
 gi|313132603|gb|EFR50220.1| GTP-binding protein Era [Bifidobacterium bifidum NCIMB 41171]
          Length = 344

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 10/181 (5%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
             R+G+ I ++G  N GKS+L NAL  K VAI +  P TTR  +   L  +   + + DT
Sbjct: 33  AYRSGF-IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDT 91

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK-----S 329
            GI     ++ +         + + D I  L   +  +EI          + T       
Sbjct: 92  PGIHRPRTLLGQRLNDIVEESLSDIDAIAFLLPAD--QEIGPGDKRILSRLRTDFATKGE 149

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           D    +      +++     G ++LI+K+  I  N+F      +P       +L +  + 
Sbjct: 150 DGTFAWKVPLIAIVTKIDQLGRQQLIDKLIEI--NEFADFSDIVPVSALEHDNLDEVRQV 207

Query: 390 L 390
           L
Sbjct: 208 L 208


>gi|256810043|ref|YP_003127412.1| small GTP-binding protein [Methanocaldococcus fervens AG86]
 gi|256793243|gb|ACV23912.1| small GTP-binding protein [Methanocaldococcus fervens AG86]
          Length = 185

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 35/178 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL----------DLEGYLV 269
           +KI I+G  NAGKSS+ NAL  K V++V+++ GTT+  +              + E   +
Sbjct: 6   FKIAIIGPENAGKSSIMNALFGKYVSLVSEVGGTTKMPIKKYWGKLKIGRVKEEPEFVNL 65

Query: 270 KISDTAGIRETDDIVEKEG----IKRTFLEVENADLILLLKEINSKKEISFPK------- 318
              D  G+  T D          +++T+ E+++AD+I+ + + +     SF +       
Sbjct: 66  VFVDLGGLYTTTDKQSPIMTPKVLEKTYEEIKDADMIIHVIDGSVGLLRSFERLHHLLKF 125

Query: 319 --NIDFIFIGTKSDLYSTYTEEY------------DHLISSFTGEGLEELINKIKSIL 362
                 I +  K DL +    E                +S+ T EG+ EL+  I + L
Sbjct: 126 RYQKPIIVVINKCDLLNYDDRENLKNYVEKRIKNTPIFVSAKTFEGIPELLRIIINYL 183


>gi|116670776|ref|YP_831709.1| GTP-binding protein Era [Arthrobacter sp. FB24]
 gi|116610885|gb|ABK03609.1| GTP-binding protein Era [Arthrobacter sp. FB24]
          Length = 318

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ I ++G  NAGKS+L NAL  K VAI +  P TTR  +   +  +   + + DT G
Sbjct: 16  RAGFSI-LVGRPNAGKSTLTNALVGKKVAITSAKPQTTRHTIRGIVHRDDAQLILVDTPG 74

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           +     ++ K         +   D I      N K          +++       I I T
Sbjct: 75  LHRPRTLLGKRLNDLVADTLSEVDAIGFCLPANEKIGPGDRFIAAQLAAVGKKPIIAIVT 134

Query: 328 KSDLYS 333
           K+DL  
Sbjct: 135 KADLVD 140


>gi|313143734|ref|ZP_07805927.1| GTP-binding protein Era [Helicobacter cinaedi CCUG 18818]
 gi|313128765|gb|EFR46382.1| GTP-binding protein Era [Helicobacter cinaedi CCUG 18818]
          Length = 295

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDT 274
           R+G+ +  LG  NAGKS+L N L  +++A+V+     TR  L I +        +   DT
Sbjct: 4   RSGF-VATLGRPNAGKSTLLNHLLGENLALVSHKANATRKQLQIIVPYAPLNTQIVFVDT 62

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            GI   + ++ +  + +    + + DL L L  I   
Sbjct: 63  PGIHHQEKLLNQYMLSQALKAMGDCDLALYLAPITDD 99


>gi|108800418|ref|YP_640615.1| GTP-binding protein Era [Mycobacterium sp. MCS]
 gi|119869547|ref|YP_939499.1| GTP-binding protein Era [Mycobacterium sp. KMS]
 gi|122976748|sp|Q1B6C5|ERA_MYCSS RecName: Full=GTPase Era
 gi|189037656|sp|A1UIQ1|ERA_MYCSK RecName: Full=GTPase Era
 gi|108770837|gb|ABG09559.1| GTP-binding protein Era [Mycobacterium sp. MCS]
 gi|119695636|gb|ABL92709.1| GTP-binding protein Era [Mycobacterium sp. KMS]
          Length = 299

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 87/239 (36%), Gaps = 34/239 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    VAI ++ P TTR  +   +  + + + + DT G
Sbjct: 5   RSGF-VCFVGRPNTGKSTLTNALVGTKVAITSNRPQTTRHTIRGIVHRDEFQIILVDTPG 63

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           +     ++ +             D+I L    +           ++  +       + I 
Sbjct: 64  LHRPRTLLGQRLNDLVKTTYSEVDVIGLCIPADEAIGPGDRWIHEQIRAVAPRTTLVVIV 123

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D                    +     +S+ TGE L+ L + +   L       P  
Sbjct: 124 TKIDKVPRDRVAAQLMAVSELVGPDAEIVPVSATTGEQLDVLTDVLAGKLPPGPAFYPDG 183

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
             + +     +++ +R   +  + + +    +           + +++   D + L+D+
Sbjct: 184 ELTDEPEETLMAELIREAALEGVRD-ELPHSLAVV--------IDEVSPREDRDDLIDV 233


>gi|251788133|ref|YP_003002854.1| putative GTPase HflX [Dickeya zeae Ech1591]
 gi|247536754|gb|ACT05375.1| GTP-binding proten HflX [Dickeya zeae Ech1591]
          Length = 433

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 101/288 (35%), Gaps = 27/288 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+          + ++G++NAGKS+LFN +   DV    D    T
Sbjct: 173 QILSRLERVEKQREQGRRARTRAEVPTVSLVGYTNAGKSTLFNRMTSADV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     +D++      ++DT G             K T  E   A L+L + + +  + 
Sbjct: 232 LDPTLRRIDVDDVGDTVLADTVGFIRDLPHDLVAAFKATLQETREATLLLHVVDASDTRV 291

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                       EI    +I F+ +  K D     T   D           +S+ TGEG+
Sbjct: 292 DENIDAVNEVLTEIE-ADDIPFLLVMNKIDQLENITPRIDRDEENRPVRVWLSAQTGEGI 350

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
             L+  +   LS +       +P H   L      ++ +E   + E  
Sbjct: 351 PLLLQALTERLSGEIAHYSLHLPPHAGRLRSRFYQLQAIEKEWIEEDG 398


>gi|218896803|ref|YP_002445214.1| GTP-binding protein [Bacillus cereus G9842]
 gi|218544661|gb|ACK97055.1| GTP-binding protein [Bacillus cereus G9842]
          Length = 419

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 111/294 (37%), Gaps = 26/294 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNAL------AKKDVAI 246
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       ++   +
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVL 230

Query: 247 VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANSNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQENRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           +EEL+  I+S +  ++ K    IP  +  +        ++   S   +   L+I
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNNHAHVLSTSYENEGTKLEI 404


>gi|261406202|ref|YP_003242443.1| GTP-binding proten HflX [Paenibacillus sp. Y412MC10]
 gi|261282665|gb|ACX64636.1| GTP-binding proten HflX [Paenibacillus sp. Y412MC10]
          Length = 430

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 86/223 (38%), Gaps = 20/223 (8%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ + + I        + +      ++ ++D+    ++++ H +  +         ++
Sbjct: 151 KNLSRLGAGIGTRGPGESKLETDRRHIRDRISDLKRQLDEVTRHRTLHRERRKKSGAVQV 210

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+L N L   DV I  +    T D  +  L+L  G  V ++DT G  +  
Sbjct: 211 ALVGYTNAGKSTLLNRLTAADVYI-ENQLFATLDPTSRVLELPSGKEVVLTDTVGFIQNL 269

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGTKS 329
                   + T  E   ADLIL + + +S                    +   I +  K 
Sbjct: 270 PHDLVAAFRATLEEANEADLILHVVDASSPMRDEQMAVVQSILQDLGASDKPQIVLFNKK 329

Query: 330 D------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
           D      L    T E    IS++  + LE +   I+  LS   
Sbjct: 330 DACEPGQLEMLPTGEGQLKISAYVDQDLESVREAIQDRLSGGN 372


>gi|330998173|ref|ZP_08321999.1| GTP-binding protein HflX [Paraprevotella xylaniphila YIT 11841]
 gi|329568865|gb|EGG50663.1| GTP-binding protein HflX [Paraprevotella xylaniphila YIT 11841]
          Length = 419

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 23/220 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +LN +  LK  + + I + K  +    G   ++ ++G++N GKS+L N L+K D
Sbjct: 181 EMDRRIILNRMSLLKQRL-AEIDRQKTTQRSNRGRMIRVALVGYTNVGKSTLMNLLSKSD 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     +SDT G          +  K T  EV  ADL+L
Sbjct: 240 V-FAENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLL 298

Query: 304 LLKEI---NSKKEISFPK---------NIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEG 350
            + +I   + + +I   +         +   + +  K D YS    +E D   ++     
Sbjct: 299 HVVDIAHPDFEDQIQVVEKTLGDLGCSDKPCMIVFNKIDAYSWVEKDEDDLTPATKENVS 358

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
           L++L+       +   ++    I    R   +L    R L
Sbjct: 359 LDDLMK------TWMARRNDNCIFISAREKTNLEDLKRVL 392


>gi|237844091|ref|XP_002371343.1| GTP-binding protein, putative [Toxoplasma gondii ME49]
 gi|211969007|gb|EEB04203.1| GTP-binding protein, putative [Toxoplasma gondii ME49]
          Length = 428

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 110/298 (36%), Gaps = 51/298 (17%)

Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS----FIEADLDFSEEE 182
           +AE   D   ++ E   ++S+      +     +  D    + +          +F   E
Sbjct: 128 QAEDTGDA-DADNEGDPQVSLVEQESRMRFWQEEQEDDGLPLLARPFVHAFQPREFLNRE 186

Query: 183 DVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNAL 239
           D+   S ++     +     I++H  +    L ++  N + ++  +GHSN GKSSL NAL
Sbjct: 187 DLPWLSPEQRKYSRILFGKPIAAHPVLVAQTLHKLPHNPWPQVAAVGHSNVGKSSLLNAL 246

Query: 240 A-KKDVAIVTDIPGTTRDVLTID-------LDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
              +DVA     PG TR + T D       +DL GY         ++E   I+ +E   R
Sbjct: 247 MHGRDVARSCSKPGRTRHLFTFDLGNHLSLVDLPGYGFA-RVKPQLKEEWAILIEEYFTR 305

Query: 292 TFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDL------------ 331
           +         +L L +     E        +   KN+ F  + TK+DL            
Sbjct: 306 SKQLRR----VLSLVDATKGVEALDERLWQLLAEKNLPFQVVLTKADLLTARELHAAMFD 361

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                       T    + H +SS    G+ EL   + ++ S+  K+    +   +  
Sbjct: 362 VLSRLQAVEKKETLLHPFVHAVSSRHNHGIPELRASLAAVASDWRKRQGLPLLKFQGQ 419


>gi|161502268|ref|YP_001569380.1| GTP-binding protein Era [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189037665|sp|A9MGX7|ERA_SALAR RecName: Full=GTPase Era
 gi|160863615|gb|ABX20238.1| hypothetical protein SARI_00298 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 301

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ + + ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMSFLDIVPISAETGMNVDTIASIVRKHLPEATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|310287377|ref|YP_003938635.1| GTP-binding protein Era [Bifidobacterium bifidum S17]
 gi|309251313|gb|ADO53061.1| GTP-binding protein Era [Bifidobacterium bifidum S17]
          Length = 336

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 10/181 (5%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
             R+G+ I ++G  N GKS+L NAL  K VAI +  P TTR  +   L  +   + + DT
Sbjct: 25  AYRSGF-IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDT 83

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK-----S 329
            GI     ++ +         + + D I  L   +  +EI          + T       
Sbjct: 84  PGIHRPRTLLGQRLNDIVEESLSDIDAIAFLLPAD--QEIGPGDKRILSRLRTDFATKGE 141

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           D    +      +++     G ++LI+K+  I  N+F      +P       +L +  + 
Sbjct: 142 DGTFAWKVPLIAIVTKIDQLGRQQLIDKLIEI--NEFADFSDIVPVSALEHDNLDEVRQV 199

Query: 390 L 390
           L
Sbjct: 200 L 200


>gi|239904818|ref|YP_002951556.1| putative GTP-binding protein [Desulfovibrio magneticus RS-1]
 gi|239794681|dbj|BAH73670.1| putative GTP-binding protein [Desulfovibrio magneticus RS-1]
          Length = 405

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 19/170 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I  +G  NAGKSSL NA+  +DVAIV+D  GTT D +    +L     V + DTAG+ 
Sbjct: 15  LVITFVGRRNAGKSSLINAVTGQDVAIVSDFAGTTTDPVAKPYELLPLGPVTLYDTAGLD 74

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSD 330
           +  ++     I  T   +   D+ ++  +         ++ I   +   I F+ +  K+D
Sbjct: 75  DEGELGALR-IAATRKVLWRTDIAVVAVDAAGGLGDPERRIIEEVRRLEIPFLVVFNKTD 133

Query: 331 LYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPF 371
           L +    +               +  G G   +   I ++   +  + P 
Sbjct: 134 LAAPSPADRQWCREQGIAVVTACAADGTGATAVKEAIMALAPAESLREPV 183


>gi|229074802|ref|ZP_04207817.1| hypothetical protein bcere0024_16090 [Bacillus cereus Rock4-18]
 gi|228708314|gb|EEL60472.1| hypothetical protein bcere0024_16090 [Bacillus cereus Rock4-18]
          Length = 419

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEVPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMIDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 IEELVEMIRSYIYKEYTKCEMLIPYDQGQV 380


>gi|229172520|ref|ZP_04300079.1| hypothetical protein bcere0006_16320 [Bacillus cereus MM3]
 gi|228610991|gb|EEK68254.1| hypothetical protein bcere0006_16320 [Bacillus cereus MM3]
          Length = 419

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEVPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEERVYLSAKKHIG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQV 380


>gi|213964461|ref|ZP_03392661.1| GTPase [Corynebacterium amycolatum SK46]
 gi|213952654|gb|EEB64036.1| GTPase [Corynebacterium amycolatum SK46]
          Length = 535

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 100/254 (39%), Gaps = 33/254 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + +  D+  ++ +++   +  ++    R      ++ I+G++NAGKSSL NAL    V
Sbjct: 258 DRRRLRQDMARIRKELAGMKTAREIKRARRKAGHLPRVAIVGYTNAGKSSLLNALTDAGV 317

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D  T    L +G  V ++DT G          E  + T  EV  AD+I+
Sbjct: 318 -LVEDALFATLDPTTRRTKLRDGRTVIMTDTVGFVRHLPTQLIEAFRSTLEEVLEADVIM 376

Query: 304 LLKEINSKKEISFPK----------------NIDFIFIGTKSDLYSTYT-------EEYD 340
            + + +    +   K                    + +  K D     T        +  
Sbjct: 377 HVVDSSDPFPLDQIKAVNKVINEIAEEEKAEIPPELLVVNKVDKADGITLAQLRHQLDDA 436

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
             +S+ TGEG+ EL  +++  L+     +   IP  K ++  +      +   +  E+  
Sbjct: 437 VFVSARTGEGIGELETRLELALNELESHVHMLIPYDKGNIVSMLHEDATVLSETWTEQGT 496

Query: 401 GLDI-----IAENL 409
            +D+     +A+ L
Sbjct: 497 QMDVRLPTSLADEL 510


>gi|315499852|ref|YP_004088655.1| gtp-binding proten hflx [Asticcacaulis excentricus CB 48]
 gi|315417864|gb|ADU14504.1| GTP-binding proten HflX [Asticcacaulis excentricus CB 48]
          Length = 448

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 32/228 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + I  LK ++        L    R       + ++G++NAGKS+LFN L + 
Sbjct: 182 ELDRRMIADKIKLLKGELDDVRRTRSLHRSARKKVPYPIVALVGYTNAGKSTLFNHLTRA 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V +  D+   T D     L L  G    ISDT G             + T  EV  ADL
Sbjct: 242 EV-LAKDMLFATLDTTLRTLKLPGGRAAIISDTVGFISDLPHELVAAFRATLEEVLEADL 300

Query: 302 ILLLKEINSKKEISFPKNID--------------FIFIGTKSDLYSTYTEEY-------- 339
           IL ++++++ +  +  +++                I +  K DL      +         
Sbjct: 301 ILHVRDMSNPESDAQAQDVMQVLTHIHPDLDKSRLIEVWNKIDLLDEEARDILYSRAVLD 360

Query: 340 -----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                  ++S+ TGEG+E+L++ I   +     ++   +      L  
Sbjct: 361 RAMNKPIMVSAITGEGIEKLLSDIALKVDEAGTEIDVELAPQDGQLLA 408


>gi|268592879|ref|ZP_06127100.1| GTP-binding protein HflX [Providencia rettgeri DSM 1131]
 gi|291311669|gb|EFE52122.1| GTP-binding protein HflX [Providencia rettgeri DSM 1131]
          Length = 426

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 108/293 (36%), Gaps = 26/293 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ + 
Sbjct: 114 RARTHEGKLQVELAQLRHLSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDKIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL   + +     QG+      +   I ++G++NAGKSSLFN +   DV    D    T
Sbjct: 173 QILSRLSRVEKQREQGRQARSKADIPTISLVGYTNAGKSSLFNRMTAADV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+E   +V ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVEDVGVVVLADTVGFIRHLPHDLVAAFKATLQETREATLLLHVIDAADNRL 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 + S  E      I  + +  K D+   +    D           +S+ TG+G+ 
Sbjct: 292 DENIHAVESVLEEIEADEIPTLLVMNKVDMLEDFVPRIDRDEDNKPVRVWVSAQTGDGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDI 404
            L+  +   LS +   +   +P ++  L      ++ +E      +   GL++
Sbjct: 352 LLLQALTERLSGEIAHVELRLPPNEGRLRSRFYQLQSIEREWQEEDGSIGLEV 404


>gi|291613888|ref|YP_003524045.1| GTP-binding proten HflX [Sideroxydans lithotrophicus ES-1]
 gi|291584000|gb|ADE11658.1| GTP-binding proten HflX [Sideroxydans lithotrophicus ES-1]
          Length = 380

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 71/185 (38%), Gaps = 24/185 (12%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
              +  H    +      +   + I+G++NAGKS+LFN L   +V  V +    T D   
Sbjct: 178 LKQLKRHRELQRKARNRSDVMSVSIVGYTNAGKSTLFNRLTNANV-YVANQLFATLDTTA 236

Query: 260 IDLDLEG---YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
             + LEG     V +SDT G             + T  E   ADL+L + ++NS +    
Sbjct: 237 RKIFLEGDSHRQVVLSDTVGFIRHLPHGLVAAFRSTLEETAQADLLLHVVDVNSPERHDQ 296

Query: 317 ------------PKNIDFIFIGTKSDL--------YSTYTEEYDHLISSFTGEGLEELIN 356
                        ++I  I +  K DL           Y +     +S+ TG GL EL  
Sbjct: 297 VAEVNKVLAEIGAQHIPQIVVYNKIDLQGLEAGVKRDEYGKITSIHLSARTGAGLAELRA 356

Query: 357 KIKSI 361
            +  +
Sbjct: 357 ALAEV 361


>gi|254693821|ref|ZP_05155649.1| GTP-binding protein HSR1-related [Brucella abortus bv. 3 str.
           Tulya]
 gi|261214104|ref|ZP_05928385.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|260915711|gb|EEX82572.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
          Length = 472

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 99/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 148 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 204

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 205 KILRIKRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 263

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV   DLIL +++I+ 
Sbjct: 264 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVETDLILHVRDISD 323

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K D                   E     
Sbjct: 324 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIDNLDESAREAALRLAAAGSEEGRPIP 383

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 384 VSAITGEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 421


>gi|325479102|gb|EGC82202.1| hydrogenase maturation GTPase HydF [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 382

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 11/155 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
               I I G +N+GKS+L N +   D AIV++I GTT D +   +++  +  V   DTAG
Sbjct: 7   ERVHIGIFGKTNSGKSTLLNYMTGTDTAIVSNIKGTTTDPIKKAMEITDFGPVLFIDTAG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-KEISFPK--NIDFIFIGTKSD--- 330
           + +  D+       +T   ++  D+ +    I+   K IS  K  N   I+I +K D   
Sbjct: 67  VGDDTDLGTARE-SKTKEILDQCDIFIYSLSIDDDLKFISDIKKTNKPIIYIASKQDIDE 125

Query: 331 ---LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
              + S Y       I     +   ++ +KIK + 
Sbjct: 126 GSKIISKYKNLNPIAIDIRNIDDRLKIFDKIKKLY 160


>gi|34541492|ref|NP_905971.1| GTP-binding protein HflX [Porphyromonas gingivalis W83]
 gi|188995677|ref|YP_001929929.1| GTP-binding protein [Porphyromonas gingivalis ATCC 33277]
 gi|34397809|gb|AAQ66870.1| GTP-binding protein HflX [Porphyromonas gingivalis W83]
 gi|188595357|dbj|BAG34332.1| GTP-binding protein [Porphyromonas gingivalis ATCC 33277]
          Length = 406

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 16/194 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + VL+ I  LK ++     Q  +    R    ++ ++G++N GKS+L N L+K +V  
Sbjct: 169 DRRIVLDKIARLKEELRDIDKQKSVQRKNRGKMVRVALVGYTNVGKSTLMNVLSKSEV-F 227

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + ++     +SDT G          E  K T  EV  ADL++ + 
Sbjct: 228 AENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTQLVESFKSTLDEVREADLLVHVV 287

Query: 307 EINSK-------------KEISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLE 352
           +++                EI+  +    + +  K D +S T  +E D    +      E
Sbjct: 288 DMSHPAFEEQIEVVNQTLAEITAGEEKPMLLLFNKIDAFSFTPKDEDDLTPRTKENISAE 347

Query: 353 ELINKIKSILSNKF 366
           EL     + L N  
Sbjct: 348 ELQQTWMAKLGNDC 361


>gi|330469592|ref|YP_004407335.1| GTPase Era [Verrucosispora maris AB-18-032]
 gi|328812563|gb|AEB46735.1| GTPase Era [Verrucosispora maris AB-18-032]
          Length = 299

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 79/225 (35%), Gaps = 23/225 (10%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +S        R G+    +G  NAGKS+L NA+  + +AI ++ P TTR ++   L    
Sbjct: 1   MSAAPTPRAYRAGF-ACFVGRPNAGKSTLTNAIVGQKIAITSNKPQTTRHIIRAVLHRPD 59

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPK 318
             + + DT G+     ++ +             D+I L    +                 
Sbjct: 60  SQLVLVDTPGLHRPRTLLGERLNDLVRQTWSEVDVIGLCIPADEPIGRGDRFITGELAEL 119

Query: 319 NIDFIFIGTKSDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNK 365
               + + TK+DL                        +S+  G  ++ L+  +   L   
Sbjct: 120 KATVLAVVTKTDLVDKKRLAEQLLAVSELGEFAEVVPVSAVAGHQVDTLVEVMTRYLPES 179

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL 409
            +  P  + +       +++ VR   +  + +E    + ++ E +
Sbjct: 180 PQLYPDDMLTDDPEQVLVAELVREAALEGVRDELPHSIAVVVEEM 224


>gi|145223297|ref|YP_001133975.1| GTP-binding protein Era [Mycobacterium gilvum PYR-GCK]
 gi|315443757|ref|YP_004076636.1| GTP-binding protein Era [Mycobacterium sp. Spyr1]
 gi|145215783|gb|ABP45187.1| GTP-binding protein Era [Mycobacterium gilvum PYR-GCK]
 gi|315262060|gb|ADT98801.1| GTP-binding protein Era [Mycobacterium sp. Spyr1]
          Length = 304

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 75/200 (37%), Gaps = 25/200 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    VAI ++ P TTR  +   +  + + + + DT G
Sbjct: 7   RSGF-VCFVGRPNTGKSTLTNALVGTKVAITSNRPQTTRHTIRGIVHRDDFQIVLVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIG 326
           +     ++ +   +         D+I +    + K          +  +       I I 
Sbjct: 66  LHRPRTLLGQRLNELVKDTYSEVDVIGMCIPADEKIGPGDRWIYEQIRAVAPRTTLIAIV 125

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D  S                 +     +S+ +G  L+ L + + S L       P  
Sbjct: 126 TKIDKVSKDRVGEQLLAVSELFGPDADIVPVSATSGTQLDVLTDVLVSKLPPGPAFYPDG 185

Query: 373 IPSHKRHLYHLSQTVRYLEM 392
             + +     +++ +R   +
Sbjct: 186 ELTDEPEEVLMAELIREAAL 205


>gi|152976100|ref|YP_001375617.1| small GTP-binding protein [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024852|gb|ABS22622.1| small GTP-binding protein [Bacillus cytotoxicus NVH 391-98]
          Length = 420

 Score = 74.9 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 110/318 (34%), Gaps = 35/318 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +++ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNISSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYMMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LVLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKNNQTFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 ALIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMQLPCGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +          +            +I  I +  K 
Sbjct: 259 PTSLVAAFRSTLEEAGEADVILHVVDAADPNYAGHEQTVKQLLTELGIDHIPVITVYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           D     +  + +    + S+F    L  L   ++  +  + +     IP  +  L  L +
Sbjct: 319 DKLHQNFIPFPKSDFLMTSAFQENDLFNLKQAVEKKMIEEMEPYKVKIPPSEGRLLALLK 378

Query: 386 TVRYLEMASLNEKDCGLD 403
           T   L      E +   +
Sbjct: 379 TDTVLTSMVFKETELLYE 396


>gi|296109412|ref|YP_003616361.1| GTP-binding proten HflX [Methanocaldococcus infernus ME]
 gi|295434226|gb|ADG13397.1| GTP-binding proten HflX [Methanocaldococcus infernus ME]
          Length = 400

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 34/215 (15%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV--- 244
            ++V  +I  +K  +       ++    R  +  + ++G++NAGK+SL N L  +     
Sbjct: 140 YQKVKREIASIKKKLEKLREHRRIARKGREKFDSVGLVGYTNAGKTSLLNILCGEKKEAK 199

Query: 245 -AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
             + T +  TTR +  I        + ++DT G  +       E    T  E  ++DLIL
Sbjct: 200 NQVFTTLSTTTRRIRGIK-----RKILVTDTVGFMDDLPPFMIEAFLSTIEESSDSDLIL 254

Query: 304 LLKEINSKKEISFPK-------------NIDFIFIGTKSDLYSTYTEE-----------Y 339
           L+ + +   E    K                 I +  K DL +    E            
Sbjct: 255 LVIDASEDIEEIERKLKVNHEILEKVNCKSPIITVFNKCDLITEEKREEILTKLERYIVN 314

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              +S+ TGEG+E L N I   L+     +  + P
Sbjct: 315 PIFVSAKTGEGIERLKNLILDKLNLSIGVIETNNP 349


>gi|331695958|ref|YP_004332197.1| GTP-binding proten HflX [Pseudonocardia dioxanivorans CB1190]
 gi|326950647|gb|AEA24344.1| GTP-binding proten HflX [Pseudonocardia dioxanivorans CB1190]
          Length = 493

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 94/254 (37%), Gaps = 34/254 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKK 242
               + + + +  L+ +I++   + + + G   RN    + I+G++NAGKSSL NAL   
Sbjct: 231 ELDRRRIRHRMSKLRREIAAMRTVRETQRGSRRRNEVPGVAIVGYTNAGKSSLLNALTDA 290

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +V D    T D  T   +  +G    ++DT G          E  + T  E   ADL
Sbjct: 291 GV-LVEDALFATLDPTTRRAETPDGRDYTLTDTVGFVRHLPHQLVEAFRSTLEETAQADL 349

Query: 302 ILLLKEINS---KKEISFPKN-------------IDFIFIGTKSDLYSTYTEEY------ 339
           ++ + + +    + +I+  +                 + +  K D               
Sbjct: 350 LVHVVDASDPLPEDQIAAVRKVLVEIGEEQQGRMPPELLVVNKIDAAGDLQLARLRHLLP 409

Query: 340 -DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT------VRYLEM 392
               +S+ TG G+  L  +I  +L N   ++   +P  +  L     +        ++  
Sbjct: 410 DAVFVSAHTGAGVSLLRRRIAELLPNPEVEVELLVPYAEGALVARVHSDGVVLEEEHVAD 469

Query: 393 ASLNEKDCGLDIIA 406
            +      G ++  
Sbjct: 470 GTRMRARVGPELAT 483


>gi|312134695|ref|YP_004002033.1| gtp-binding proten hflx [Caldicellulosiruptor owensensis OL]
 gi|311774746|gb|ADQ04233.1| GTP-binding proten HflX [Caldicellulosiruptor owensensis OL]
          Length = 509

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 82/215 (38%), Gaps = 18/215 (8%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L+ +   I        + ++     +  + +I      +  +    +   I      + I
Sbjct: 296 LSRLGGGIGTRGPGETKLEIDRRHIQRRIEEIKKELEKVKKNREVQRKSRIENQVPVVSI 355

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G++NAGKS+L N ++K DV +V D    T D  T  +  +G    ++DT G        
Sbjct: 356 IGYTNAGKSTLMNRISKADV-LVEDKLFATLDTTTRRVYHKGKEFLLTDTVGFIRNLPHH 414

Query: 285 EKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDL- 331
             E    T  EV+ ++LIL + +I+        K            NI  I +  K D  
Sbjct: 415 LVEAFSSTLEEVKYSNLILNVVDISDPYYYDHIKVSEDLLKQLGAENIPLIRVYNKIDKV 474

Query: 332 ----YSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +       +S+  G G++ L++ I   +
Sbjct: 475 DLSSVDVFDNLPHVFVSARDGRGIDTLLDMIVERI 509


>gi|229160831|ref|ZP_04288822.1| hypothetical protein bcere0009_16210 [Bacillus cereus R309803]
 gi|228622679|gb|EEK79514.1| hypothetical protein bcere0009_16210 [Bacillus cereus R309803]
          Length = 419

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEVPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHAG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQV 380


>gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b]
 gi|149811066|gb|EDM70903.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b]
          Length = 425

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 105/261 (40%), Gaps = 32/261 (12%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ M  +S + + L   W   L   R  +       E +       + +   
Sbjct: 120 AATREGVLQVEMAALSYQRTRLVRAWTH-LERQRGGLGFVGGPGETQI--EADRRAIDEQ 176

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           ++ L+  +S  +   +L    R       + ++G++NAGKS+LFN +   DV    D+  
Sbjct: 177 LVRLRRQLSKVVRTRELHRAARAKVPFPIVALVGYTNAGKSTLFNRMTGADVM-AKDMLF 235

Query: 253 TTRDVLTIDLDL--EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            T D     ++L   G  V +SDT G             + T  EV  ADLI+ +++I+ 
Sbjct: 236 ATLDPTMRRIELPGGGPEVILSDTVGFISDLPTELVAAFRATLEEVLAADLIVHVRDISH 295

Query: 311 KKEISFPKNIDFIF-------------IGTKSD----------LYSTYTEEYDHLISSFT 347
            +  +  +++  I              +  K D          L      E+   +S+ T
Sbjct: 296 PESEAQARDVRTILESLGVRDSIPQIEVWNKIDKLDDETRQAVLTRAARHEHVQALSAVT 355

Query: 348 GEGLEELINKIKSILSNKFKK 368
           GEG+ EL+  I S +++  ++
Sbjct: 356 GEGMSELVGVITSAMTDTTQE 376


>gi|118477292|ref|YP_894443.1| GTP-binding protein [Bacillus thuringiensis str. Al Hakam]
 gi|196045037|ref|ZP_03112270.1| GTP-binding protein [Bacillus cereus 03BB108]
 gi|229184063|ref|ZP_04311275.1| hypothetical protein bcere0004_16300 [Bacillus cereus BGSC 6E1]
 gi|118416517|gb|ABK84936.1| GTP-binding protein [Bacillus thuringiensis str. Al Hakam]
 gi|196024039|gb|EDX62713.1| GTP-binding protein [Bacillus cereus 03BB108]
 gi|228599414|gb|EEK57022.1| hypothetical protein bcere0004_16300 [Bacillus cereus BGSC 6E1]
          Length = 419

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEVPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQV 380


>gi|332280241|ref|ZP_08392654.1| YeeP protein [Shigella sp. D9]
 gi|332102593|gb|EGJ05939.1| YeeP protein [Shigella sp. D9]
          Length = 303

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 33  SLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 91

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 92  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 149

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 150 RHILHRGHQRVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 207

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 208 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 263

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 264 ----DRIF 267


>gi|260438009|ref|ZP_05791825.1| GTP-binding protein HflX [Butyrivibrio crossotus DSM 2876]
 gi|292809489|gb|EFF68694.1| GTP-binding protein HflX [Butyrivibrio crossotus DSM 2876]
          Length = 411

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 22/213 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + +   I  LK+++ + ++  +L    R   N   + I+G++NAGKS+L N L   
Sbjct: 162 EMDRRIIHERIGQLKHELEAVVTHRELTRSQRSRSNIPVVAIVGYTNAGKSTLLNTLTGA 221

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            + +  +    T D  T  L+LE G  + ++DT G          E  K T  E   AD+
Sbjct: 222 GI-LAENKLFATLDPTTRGLELESGQQILLTDTVGFISKLPHHLVEAFKSTLEEAVYADI 280

Query: 302 ILLLKEINSKK------------EISFPKNIDFIFIGTKSDLYST-----YTEEYDHLIS 344
           IL + + ++              E     +   I    K ++        +  +    IS
Sbjct: 281 ILHVVDASNPAMDSQMYVVYDTLEKLGAGDKPIITAFNKIEIAGNKVLKDFKADKTVNIS 340

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +  G+GL EL + I+ +L      +  +    +
Sbjct: 341 ALHGDGLTELKDTIEEVLRESKIYIEKTYSYTE 373


>gi|229102463|ref|ZP_04233170.1| hypothetical protein bcere0019_16240 [Bacillus cereus Rock3-28]
 gi|228680948|gb|EEL35118.1| hypothetical protein bcere0019_16240 [Bacillus cereus Rock3-28]
          Length = 419

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 109/271 (40%), Gaps = 28/271 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E Q ++ +  +   +  L G   + L      +        E+ ++    +++  
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIG-LRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEE 169

Query: 195 DILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIV 247
            I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V
Sbjct: 170 QISVLNKDLEALVAQRQTQRKQRKKNEVPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQV 229

Query: 248 T--DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
              D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ 
Sbjct: 230 FEKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIH 289

Query: 305 LKE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGE 349
           + +    N ++ I            +NI  I+   KSD+        +E    +S+    
Sbjct: 290 VVDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMIDVEIPKVQEDRVYLSAKKHV 349

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           G+EEL+  I+S +  ++ K    IP  +  +
Sbjct: 350 GIEELVEMIRSYIYKEYTKCEMLIPYDQGQV 380


>gi|114771148|ref|ZP_01448588.1| GTP-binding protein HflX [alpha proteobacterium HTCC2255]
 gi|114548430|gb|EAU51316.1| GTP-binding protein HflX [alpha proteobacterium HTCC2255]
          Length = 417

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 30/206 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDV 244
             +++ + IL LK  +   +   +L    R       + ++G++NAGKS+LFN +    V
Sbjct: 160 DRRQIDDAILRLKKQLEKVVKTRELHRSARKKIPYPIVALVGYTNAGKSTLFNYMTGAKV 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D+   T D    +++L  G  + +SDT G             + T  EV +A+LIL
Sbjct: 220 -FAKDMLFATLDPTMREVELPSGQKIILSDTVGFISELPTQLIAAFRATLEEVLDANLIL 278

Query: 304 LLKEINSKK---------------EISFPKNIDFIFIGTKSDLYST----------YTEE 338
            +++I+  +               ++S     + + +  K+DL S              E
Sbjct: 279 HVRDISHPETEAQANDVNDILEELDVSDNTKSNILEVWNKTDLLSNDELINAKNISDRSE 338

Query: 339 YDHLISSFTGEGLEELINKIKSILSN 364
               +S+ TG+GL  L+++I   L  
Sbjct: 339 KIRTVSALTGDGLSVLLSEIDENLKE 364


>gi|224282934|ref|ZP_03646256.1| GTP-binding protein Era [Bifidobacterium bifidum NCIMB 41171]
          Length = 336

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 10/181 (5%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
             R+G+ I ++G  N GKS+L NAL  K VAI +  P TTR  +   L  +   + + DT
Sbjct: 25  AYRSGF-IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDT 83

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK-----S 329
            GI     ++ +         + + D I  L   +  +EI          + T       
Sbjct: 84  PGIHRPRTLLGQRLNDIVEESLSDIDAIAFLLPAD--QEIGPGDKRILSRLRTDFATKGE 141

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           D    +      +++     G ++LI+K+  I  N+F      +P       +L +  + 
Sbjct: 142 DGTFAWKVPLIAIVTKIDQLGRQQLIDKLIEI--NEFADFSDIVPVSALEHDNLDEVRQV 199

Query: 390 L 390
           L
Sbjct: 200 L 200


>gi|169342230|ref|ZP_02863313.1| GTP-binding protein [Clostridium perfringens C str. JGS1495]
 gi|169299714|gb|EDS81771.1| GTP-binding protein [Clostridium perfringens C str. JGS1495]
          Length = 440

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 22/140 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G +N+GKSS+ NAL  +++++V+D  GTT D +   ++L     V   DTAG  
Sbjct: 13  IHISLFGKTNSGKSSIINALTGQNISLVSDFKGTTTDPVYKAMELLPLGPVVFVDTAGFD 72

Query: 279 ETDDIVEKEGIKRTFLEVENADLILL----------------LKEINSKKEISFPK---- 318
           +  +I  K  +++T   V   D+ L+                 K++ SK+ +   K    
Sbjct: 73  DEGEIG-KLRVEKTEEVVGKTDVALITLSLYEILEAIKSNIEFKDMLSKEILWLNKLKKA 131

Query: 319 NIDFIFIGTKSDLYSTYTEE 338
               I +  K DL      E
Sbjct: 132 KKPAILVINKCDLVPNNLIE 151


>gi|328874089|gb|EGG22455.1| hypothetical protein DFA_04581 [Dictyostelium fasciculatum]
          Length = 444

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 2/95 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G  NAGKSSL N +  + +  V+    TTRD +   L  +   +   DT GI +
Sbjct: 126 LNVAVIGAPNAGKSSLVNTIIGEKICAVSSREHTTRDNIIGILTEDKTQLVFHDTPGIIK 185

Query: 280 TDDIVEK--EGIKRTFLEVENADLILLLKEINSKK 312
             ++  K  E +   +  V+ AD++LL+ +  + +
Sbjct: 186 HFEMKGKIREFVNMAWSVVKEADVVLLVVDAGAHQ 220


>gi|289522189|ref|ZP_06439043.1| putative ferrous iron transport protein B [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289504025|gb|EFD25189.1| putative ferrous iron transport protein B [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 640

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 80/207 (38%), Gaps = 31/207 (14%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              K G+ I+   K++++G+ N GKS++F+ L     AI ++ PGTT   L   + ++G 
Sbjct: 59  KTTKSGQKIK---KVLLMGNPNVGKSAIFSRLTGLH-AISSNYPGTTVGFLEGSVSIDGE 114

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNID 321
             K+ D  G    D   E E + R  L+ E  D+++++ +  + +           K   
Sbjct: 115 TYKLIDVPGAYTLDPTNEAEEVARRILD-EGGDIVVIVADATALERNLYLALQVLEKGYP 173

Query: 322 FIFIGTKSDLYSTYTEEYDHL------------ISSFTGEGLEELINKIKS--------I 361
            + +    D         D                + TGEG+  L + +          +
Sbjct: 174 SVLVLNMVDEARHKGIHIDLQTLERELGIPVVSTVAVTGEGISALKDALAKARPSFILPM 233

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             ++  +L   I    + + H   T R
Sbjct: 234 GKDERWRLIGDIVMRSQQVTHRHHTFR 260


>gi|158424703|ref|YP_001525995.1| GTP-binding protein [Azorhizobium caulinodans ORS 571]
 gi|158331592|dbj|BAF89077.1| GTP-binding protein [Azorhizobium caulinodans ORS 571]
          Length = 459

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 85/221 (38%), Gaps = 33/221 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               +++   I+ ++ ++        L    R       + ++G++NAGKS+LFN L + 
Sbjct: 186 EADRRQIGERIIRIERELEQVKRTRALHRTSRKRVPYPVVALVGYTNAGKSTLFNRLTQA 245

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V    D+   T D     +DL  G  V +SDT G             + T  EV  AD+
Sbjct: 246 EVM-AQDLLFATLDPTLRAVDLPHGTRVILSDTVGFISELPTQLVAAFRATLEEVIEADV 304

Query: 302 ILLLKEINSKK---------------EISFPKNIDFIFIGTKSDLYSTYTEE-------- 338
           IL +++I+                   I        + +  K D+      E        
Sbjct: 305 ILHVRDISHPDTDAQAADVKDVLTELGIDVEAGGRLVEVWNKIDILPEAEREQLLNTAAR 364

Query: 339 -----YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                   L+S+ TGEG   L+++I++ ++     L  ++ 
Sbjct: 365 AEPEARPELVSALTGEGAPALLDRIEAHVTAGRTLLSVTLA 405


>gi|85000519|ref|XP_954978.1| ORF1-related protein [Theileria annulata strain Ankara]
 gi|65303124|emb|CAI75502.1| ORF1-related protein, putative [Theileria annulata]
          Length = 651

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 18/163 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKD-------VAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
             + ++G SN GKSSLFN++  +         +IV++ PGTTR+       L+G  + + 
Sbjct: 1   MYVSLIGRSNVGKSSLFNSILAQAGKASNILKSIVSEKPGTTRNSKQAQFYLKGNKITLV 60

Query: 273 DTAGI--------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324
           DT G         +  D  + K   K T   VE+++LI  + + N  + ++         
Sbjct: 61  DTGGFEAFLTKTPKREDSSIFKIIEKETHKAVESSNLIFFVLDGN--EGVTQLDIHLAEK 118

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
           +    D  +    E   +I+    +G EE    +   LS+ + 
Sbjct: 119 LKNWVD-QAHIKPEVKLVINKLENKGSEEYYEVLSDCLSDCYT 160


>gi|307946584|ref|ZP_07661919.1| GTP-binding protein Era [Roseibium sp. TrichSKD4]
 gi|307770248|gb|EFO29474.1| GTP-binding protein Era [Roseibium sp. TrichSKD4]
          Length = 313

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 22/203 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N L    V+IVT    TTR ++      E   +   DT G
Sbjct: 20  RAGF-VALIGAPNAGKSTLLNQLVGTKVSIVTHKVQTTRAIVRGIAMHEASQLIFVDTPG 78

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI--------DFIFIGTK 328
           I +    +++  +   +    +ADL  LL +     +      +        D + I  K
Sbjct: 79  IFKPKRRLDRAMVDTAWSGARDADLTALLIDARKGIDEEVEDIMSRLSDLPGDKVLILNK 138

Query: 329 SDL-------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            D+             +     +   ++S+  G+G+  +++     +       P   PS
Sbjct: 139 IDVTQRDQLLQLAQKAHEILPFKETFMVSALNGDGVASILDHFAKAVPEGPWLYPEDQPS 198

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
                   ++  R      L+++
Sbjct: 199 DLPMRLLAAEITREKLFERLHQE 221


>gi|163840661|ref|YP_001625066.1| GTP-binding protein Era [Renibacterium salmoninarum ATCC 33209]
 gi|162954137|gb|ABY23652.1| GTP-binding protein [Renibacterium salmoninarum ATCC 33209]
          Length = 326

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R G+ + + G  NAGKS+L NAL  + VAI +  P TTR  +   +  + Y + + DT 
Sbjct: 23  YRAGFAV-LAGRPNAGKSTLTNALVGQKVAITSAKPQTTRHTIRGIVHRDEYQLILVDTP 81

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIG 326
           G+     ++ +         +   D+I      N K          +++  +    I + 
Sbjct: 82  GLHRPRTLLGQRLNDLVAGTLSEVDVIGFCLPANEKIGPGDRFIAAQLADLRGKPIIALV 141

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
           TK+D  S   E+  H + + +  G + L  K
Sbjct: 142 TKTDTVSK--EQLAHQLLAVSELGQQVLGEK 170


>gi|312876388|ref|ZP_07736373.1| GTP-binding proten HflX [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796882|gb|EFR13226.1| GTP-binding proten HflX [Caldicellulosiruptor lactoaceticus 6A]
          Length = 509

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 85/242 (35%), Gaps = 28/242 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRS-------FIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
               G+L     Q +  L  +R                   E       + +   I  +K
Sbjct: 269 RTKEGKLQVELAQLLTLLPRLRGTGVLLSRLGGGIGTRGPGETKLEIDRRHIQRRIEEIK 328

Query: 201 NDISSHISQ---GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            ++          +   I      + I+G++NAGKS+L N ++K DV +V D    T D 
Sbjct: 329 KELEKVKKSREVQRKSRIENQVPVVSIIGYTNAGKSTLMNRISKADV-LVEDKLFATLDT 387

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
            T  +  +G    ++DT G          E    T  EV+ ++LIL + +I+        
Sbjct: 388 TTRRVYHKGKEFLLTDTVGFIRNLPHHLVEAFSSTLEEVKYSNLILNVVDISDPYYYDHI 447

Query: 318 K------------NIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEGLEELINKIKS 360
           K            NI  I +  K D         +       IS+  G G++ L++ I  
Sbjct: 448 KVSEDLLKQLGAENIPLIRVYNKIDKVDLSSVDVFDNVPHVFISAQDGRGIDTLLDMIVE 507

Query: 361 IL 362
            +
Sbjct: 508 RI 509


>gi|300927013|ref|ZP_07142769.1| hypothetical protein HMPREF9548_05002 [Escherichia coli MS 182-1]
 gi|300416990|gb|EFK00301.1| hypothetical protein HMPREF9548_05002 [Escherichia coli MS 182-1]
          Length = 309

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 39  SLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 97

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 98  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDDYFW 155

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 156 RHILHRGHQRVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 213

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 214 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 269

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 270 ----DRIF 273


>gi|289422751|ref|ZP_06424591.1| GTP-binding protein HflX [Peptostreptococcus anaerobius 653-L]
 gi|289156930|gb|EFD05555.1| GTP-binding protein HflX [Peptostreptococcus anaerobius 653-L]
          Length = 430

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 22/205 (10%)

Query: 222 IVILGHSNAGKSSLFNAL-------AKKDVAIVTDIPGTTRDV-LTIDLDLEGYLVKISD 273
           +   G++N GKS++ N L        K+   IV D   +T DV L   +   G    I D
Sbjct: 209 VAFAGYTNCGKSTIMNKLIELGPDHTKESEVIVKDHMLSTLDVSLRKSMLPNGKDFMIVD 268

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--------- 324
           T G       + +E  + TF EV  ADLIL++ + +     +    +DF F         
Sbjct: 269 TIGFVSDLPGIIREAFRSTFEEVSYADLILVVYDASRDDLEAQKSIMDFTFEKIGVSNKR 328

Query: 325 ---IGTKSDLYSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +  K+D      E  D    +S+ +G  L++LI  I+  L    +     IP  +  
Sbjct: 329 KIEVYNKADKLDPIPESSDNKIYVSAKSGYNLDKLIEAIQFNLFEDNQDASLLIPYSRFD 388

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDI 404
           +++  +  R +EM      D G+++
Sbjct: 389 IFNEIKKNRVIEMDDFKHTDFGIEL 413


>gi|284052927|ref|ZP_06383137.1| small GTP-binding protein domain-containing protein [Arthrospira
           platensis str. Paraca]
 gi|291568532|dbj|BAI90804.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 547

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 100/250 (40%), Gaps = 36/250 (14%)

Query: 190 KEVLNDILFLKNDI--SSHISQGKLGEI-IRNG-YKIVILGHSNAGKSSLFNALAKKDVA 245
           K +   +  +++++   + IS+ +  E  +  G  ++VI G  +AGK+S+ N L  + V 
Sbjct: 97  KAIRQQVNQIQDEVARQALISRSQDIEANLSQGSIQVVIFGTGSAGKTSVVNGLMGEMVG 156

Query: 246 IVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            V    GTT +  T  L L G    + I DT GI E  +       +        ADL+L
Sbjct: 157 RVNAPMGTTINGETYRLKLPGLNREILIIDTPGIGEVGEGGATRS-EMARTLATEADLLL 215

Query: 304 LLKEINSKKEISFPK------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            + + + ++   +P           + I  K+DLY+   +               +++N+
Sbjct: 216 FVVDNDLRQSEWYPLRNLAEMGKRSLLIFNKTDLYTEADKN--------------QILNQ 261

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQ---------TVRYLEMASLNEKDCGLDIIAEN 408
           +K  +            +    L +L            +  +   +   +  G ++IA+N
Sbjct: 262 LKQRVGGFISSEDVIAIAANPQLINLENGDTFKPEPDLMPLIHKIATILRAEGEELIADN 321

Query: 409 LRLASVSLGK 418
           + L S  LG+
Sbjct: 322 ILLQSQRLGE 331


>gi|300023207|ref|YP_003755818.1| GTP-binding proten HflX [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525028|gb|ADJ23497.1| GTP-binding proten HflX [Hyphomicrobium denitrificans ATCC 51888]
          Length = 467

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 62/316 (19%), Positives = 113/316 (35%), Gaps = 34/316 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  +S +   L   W                   + ++     ++ ++
Sbjct: 149 RARTREGVLQVELAHLSYQKGRLVRAWTHLERQRGGGGFLGGPGEAQIELDKRMLQDRID 208

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I     D+       + G        + ++G++NAGKS+LFN +    V  +  +  T 
Sbjct: 209 AIKRDLKDVVRTRDLHRKGRRKVPYPIVAVVGYTNAGKSTLFNKITGAGVVAMDQVFATL 268

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
              +          + +SDT G             + T  EV  ADLIL +++I  ++  
Sbjct: 269 DPTMREVKLPSARRIILSDTVGFISDLPTSLVAAFRATLEEVVEADLILHVRDIAHEETE 328

Query: 315 S----------------FPKNIDFIFIGTKSDLY-----------STYTEEYDHLISSFT 347
           +                 P +     +  K DL            +   E    L+S+ T
Sbjct: 329 AQARDVEKVLSELGIDTLPVDGHIQEVWNKIDLLTGDRRAELQHEAQRNERPPVLVSAVT 388

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH-LSQTVRYLEMASLNEKDCGLDIIA 406
           GEG+  L++ I S LS   + L   IP     L + L +T   L  A    KD  +++  
Sbjct: 389 GEGIVPLLDAIDSRLSVADEILDVIIPGSLGALLNWLHETCDVL--AREARKDGSIELR- 445

Query: 407 ENLRLASVSLGKITGC 422
             LR+ S    ++ G 
Sbjct: 446 --LRIPSEKKDRVLGQ 459


>gi|228914459|ref|ZP_04078069.1| hypothetical protein bthur0012_16890 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228845170|gb|EEM90211.1| hypothetical protein bthur0012_16890 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 419

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 111/294 (37%), Gaps = 26/294 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           +EEL+  I+S +  ++ K    IP  +  +     T  ++   S   +   L++
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNTHAHVLSTSYENEGTKLEV 404


>gi|329930826|ref|ZP_08284225.1| GTP-binding protein HflX [Paenibacillus sp. HGF5]
 gi|328934528|gb|EGG31033.1| GTP-binding protein HflX [Paenibacillus sp. HGF5]
          Length = 430

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 20/223 (8%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ + + I        + +      ++ ++D+    ++++ H +  +         +I
Sbjct: 151 KNLSRLGAGIGTRGPGESKLETDRRHIRDRISDLKRQLDEVTRHRTLHRERRKKSGAVQI 210

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+L N L   DV I  +    T D  +  L+L  G  V ++DT G  +  
Sbjct: 211 ALVGYTNAGKSTLLNRLTAADVYI-ENQLFATLDPTSRVLELPSGKEVVLTDTVGFIQNL 269

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGTKS 329
                   + T  E   ADLIL + + +S                    +   I +  K 
Sbjct: 270 PHDLVAAFRATLEEANEADLILHVVDASSPMRDEQMAVVQSILQDLGAADKPQIVLFNKK 329

Query: 330 D------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
           D      L    T E    IS++  E LE +   I+  LS   
Sbjct: 330 DACEPGQLEMLPTGEGHLKISAYVDEDLESVREAIQDRLSGGN 372


>gi|291539580|emb|CBL12691.1| GTP-binding protein HflX [Roseburia intestinalis XB6B4]
          Length = 414

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 34/240 (14%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           K+ +  +     ++  H    +     +      I+G++NAGKS+L N L    V +  D
Sbjct: 172 KDRIAQLNRELKEVRKHREITRAQREKKQIPVAAIVGYTNAGKSTLLNHLTGAGV-LEED 230

Query: 250 IPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D  T  L+L G   + ++DT G          E  K T  E + AD I+ + + 
Sbjct: 231 KLFATLDPTTRVLELPGRQEILLTDTVGFIRKLPHHLIEAFKSTLEEAKYADYIVHVVDA 290

Query: 309 NSKKEIS------------FPKNIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEG 350
           ++ +                 +    I +  K D          +  +Y   +S+  G G
Sbjct: 291 SNPQRDKQMHIVYDTLYQLDIREKTVITLFNKQDQVTDEEPIRDFKADYTLAVSAKKGTG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           LEEL     ++L +              +   + +T+ Y E   L +     +++ E  R
Sbjct: 351 LEELKELFCTLLRD--------------NKILVERTISYQEAGILQQIRKSGELLEEEYR 396


>gi|228958152|ref|ZP_04119885.1| hypothetical protein bthur0005_16630 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296502464|ref|YP_003664164.1| GTP-binding protein hflX [Bacillus thuringiensis BMB171]
 gi|228801535|gb|EEM48419.1| hypothetical protein bthur0005_16630 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296323516|gb|ADH06444.1| GTP-binding protein hflX [Bacillus thuringiensis BMB171]
          Length = 419

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQENRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQV 380


>gi|311744959|ref|ZP_07718744.1| GTP-binding protein HflX [Algoriphagus sp. PR1]
 gi|126577466|gb|EAZ81686.1| GTP-binding protein HflX [Algoriphagus sp. PR1]
          Length = 422

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 14/169 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAI 246
             +++ N I  LK  +     QG      R G  ++ ++G++N GKS+L N + K D+ +
Sbjct: 177 DKRDIRNKITLLKQKLREIEKQGVTQRKGRKGIVRVALVGYTNVGKSTLMNLVTKTDI-L 235

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + LE     +SDT G          E  K T  E+  ADL++ + 
Sbjct: 236 AENKLFATVDSTVRKVVLERVPFLLSDTVGFIRKLPTHLIEAFKSTLDEIREADLLVHVV 295

Query: 307 EINS---KKEISFPK---------NIDFIFIGTKSDLYSTYTEEYDHLI 343
           +I+    +  IS            +   + +  K DL      E   + 
Sbjct: 296 DISHPNFEDHISVVNQTLREINAGDKPILLVFNKIDLVEQMPSEEAIMN 344


>gi|145347979|ref|XP_001418436.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578665|gb|ABO96729.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 519

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 100/262 (38%), Gaps = 25/262 (9%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E Q ++ M  +  E+  L   W   L              ++ ++     +E  + +   
Sbjct: 216 EGQLQVEMAQLEYEMPRLTKMWSH-LERQSGSGAVKGMGEKQIEIDKRLLRERKSLLNAK 274

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
              + +H  Q +          + + G++NAGKSSL N L   +V +  D    T D  T
Sbjct: 275 IESMRTHREQYRQKRKAERVPIVSLAGYTNAGKSSLLNKLTNAEV-LAEDKLFATLDPTT 333

Query: 260 IDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
             L+L  G  V ++DT G  +          + T  EV  + LIL + +I+S    +   
Sbjct: 334 RRLELANGMTVLMTDTVGFIQKLPTQLVAAFRATLEEVLESSLILHVVDISSDLSEAHMS 393

Query: 319 NIDFI------------FIGTKSD--LYSTYTEEYDH--------LISSFTGEGLEELIN 356
            +D +             +  K D  L      E +         ++S+ TGEGL+ L +
Sbjct: 394 TVDSVLDELDAGEIPQLLVWNKIDNVLDEEERLEIEIAAEDAGAVVVSTLTGEGLDALQD 453

Query: 357 KIKSILSNKFKKLPFSIPSHKR 378
           KI  I+  +       +  ++R
Sbjct: 454 KIVEIIKKRTLSRCEMLIPYER 475


>gi|167645702|ref|YP_001683365.1| GTP-binding protein Era [Caulobacter sp. K31]
 gi|167348132|gb|ABZ70867.1| GTP-binding protein Era [Caulobacter sp. K31]
          Length = 329

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 35/201 (17%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  NAGKS+L N +    V+IVT    TTR  +          + + DT GI     
Sbjct: 27  AIIGAPNAGKSTLVNRMVGAKVSIVTQKVQTTRFPVRGVAMTGQTQIVLVDTPGIFTPRR 86

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKK----------------------EISFPKNI 320
            +++  ++  +   E++++++ L ++ ++                       E     N 
Sbjct: 87  RLDRAMVRSAWSGAEDSEVVVHLVDVQAELASRERRASAGEHRSVQDVQTIIEGLKASNR 146

Query: 321 DFIFIGTKS-------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
             I    K              DLY T       +IS+ TG G+++L+ K+ S++     
Sbjct: 147 QVILALNKIDGVKRETLLAVAHDLYETGVYSEVFMISASTGAGVDDLMAKLASLMPEGPW 206

Query: 368 KLPFSIPSHKRHLYHLSQTVR 388
             P    +        ++  R
Sbjct: 207 LYPEDQTADLPARLLAAEITR 227


>gi|312794069|ref|YP_004026992.1| gtp-binding proten hflx [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181209|gb|ADQ41379.1| GTP-binding proten HflX [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 509

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 85/242 (35%), Gaps = 28/242 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRS-------FIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
               G+L     Q +  L  +R                   E       + +   I  +K
Sbjct: 269 RTKEGKLQVELAQLLTLLPRLRGTGVLLSRLGGGIGTRGPGETKLEIDRRHIQRRIEEIK 328

Query: 201 NDISSHISQ---GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            ++          +   I      + I+G++NAGKS+L N ++K DV +V D    T D 
Sbjct: 329 KELEKVKKSREVQRKSRIENQVPVVSIIGYTNAGKSTLMNRISKADV-LVEDKLFATLDT 387

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
            T  +  +G    ++DT G          E    T  EV+ ++LIL + +I+        
Sbjct: 388 TTRRVYHKGKEFLLTDTVGFIRNLPHHLVEAFSSTLEEVKYSNLILNVVDISDPYYYDHI 447

Query: 318 K------------NIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEGLEELINKIKS 360
           K            NI  I +  K D         +       IS+  G G++ L++ I  
Sbjct: 448 KVSEDLLKQLGAENIPLIRVYNKIDKVDLSSVDVFDNVPHVFISAQDGRGIDTLLDMIVE 507

Query: 361 IL 362
            +
Sbjct: 508 RI 509


>gi|145300360|ref|YP_001143201.1| GTP-binding protein Era [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142853132|gb|ABO91453.1| GTP-binding protein Era [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 299

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +      + +     DT G+  E 
Sbjct: 10  VAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRILGIDTEDNHQTIYVDTPGLHIEE 69

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPKNIDFIFIG--TKSDLYS 333
              + +   +     + +  +++ + +      + +  +   +++    +    K D   
Sbjct: 70  KRAINRLMNRAATSSLGDVAMVVFVVDGTHWTKDDEMVLGKLRHLPCPVVLAVNKIDNVK 129

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+  G  +E++    K +L       P    + +  
Sbjct: 130 DKEDLLPHLEWLGQQMKFSHILPISAEKGTNVEKIREWSKDLLPENNFFFPEDYVTDRSS 189

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 190 RFMASEIIR 198


>gi|49481110|ref|YP_036006.1| GTP-binding protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228933156|ref|ZP_04096013.1| hypothetical protein bthur0009_16230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|49332666|gb|AAT63312.1| GTP-binding protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228826513|gb|EEM72289.1| hypothetical protein bthur0009_16230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 419

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 111/294 (37%), Gaps = 26/294 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           +EEL+  I+S +  ++ K    IP  +  +     T  ++   S   +   L++
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNTHAHVLSTSYENEGTKLEV 404


>gi|88810493|ref|ZP_01125750.1| GTP-binding protein [Nitrococcus mobilis Nb-231]
 gi|88792123|gb|EAR23233.1| GTP-binding protein [Nitrococcus mobilis Nb-231]
          Length = 435

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 82/237 (34%), Gaps = 23/237 (9%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    S L   W   L   +  I        + ++      + +  +      +   
Sbjct: 133 LAQLRHIASRLVRGWSH-LERQKGGIGLRGPGETQLELDRRLLGQRIKQLEKRLTKVRRQ 191

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
             QG+     R    +  +G++NAGKS+LFN L +  V I  D+   T D     ++L G
Sbjct: 192 REQGRQARRKREFVTVSFVGYTNAGKSALFNRLTESHVYI-ADLLFATLDTTLRRIELPG 250

Query: 267 -YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------- 316
                I+DT G             + T  EV  ADL+L + +I                 
Sbjct: 251 SEQAIIADTVGFIRELPHQLIAAFRSTLEEVAQADLLLHVIDIADPLREQRRWEVERVLS 310

Query: 317 ---PKNIDFIFIGTKSDL--------YSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                +I  + I  K DL             +     +S+ TGEG+E L   I   +
Sbjct: 311 DIGAGDIPALLIFNKLDLSGGPARLERDGTGQPVAVWVSAQTGEGMELLRAAIAERI 367


>gi|283795872|ref|ZP_06345025.1| ferrous iron transport protein B [Clostridium sp. M62/1]
 gi|291076505|gb|EFE13869.1| ferrous iron transport protein B [Clostridium sp. M62/1]
          Length = 667

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 83/238 (34%), Gaps = 30/238 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             +  +G+ N GK++LFNA     +  V + PG T + +  +   +G  +++ D  GI  
Sbjct: 10  ITVGFVGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERVEGETSYKGRPIRVIDLPGIYS 68

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                 +E + R  +E    D+I+ + + +S +                I      D+  
Sbjct: 69  LTSYTIEERVTRKCIEENEVDVIINVVDASSLERNLYLTLQLLELKKPVILALNMMDIVE 128

Query: 334 TYTEEYDHLI-------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               E D                S+    GL+ L++    ++ +  +     +  ++  +
Sbjct: 129 ERGMEIDLHRLPEMLGGIPCIPVSARKRTGLDVLMHA---VVHHYEEGPHGIVVRYQEPI 185

Query: 381 YHLSQTVRYLEMASLNEKDC----GLDIIAENLRLASVS---LGKITGCVDVEQLLDI 431
             L +    +  A   E +      + ++  +  +       L  I      + +++ 
Sbjct: 186 ERLIEKTEVVLRARFGEMENLRWHAIKMLEYDETVCQEHPVDLSNIIDRSYEKDIINE 243


>gi|307153147|ref|YP_003888531.1| small GTP-binding protein [Cyanothece sp. PCC 7822]
 gi|306983375|gb|ADN15256.1| small GTP-binding protein [Cyanothece sp. PCC 7822]
          Length = 208

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 19/169 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N  +I ++G  N GKS LFNAL     A V++ PGTT +V      ++   V + DT 
Sbjct: 36  LTNIPQIALVGMPNVGKSVLFNALTGT-YATVSNYPGTTVEVSRGQTVIDDRQVNVIDTP 94

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKS 329
           G+     I E+E + R  L  E  +L + + +  +   +           I  +      
Sbjct: 95  GMYSLVPITEEERVARDLLLKERVNLAIHVLDAKNLARMLPLTFQLIETEIPVLLALNMM 154

Query: 330 DLYSTYTEEYDHL------------ISSFTGEGLEELINKIKSILSNKF 366
           D       E +              ++   G G++EL++++   +++  
Sbjct: 155 DEARQLEIEINQQKLEEELKIPVVTMAVAQGRGVKELVSRMAKYVTSDC 203


>gi|301064107|ref|ZP_07204554.1| GTP-binding protein HflX [delta proteobacterium NaphS2]
 gi|300441727|gb|EFK06045.1| GTP-binding protein HflX [delta proteobacterium NaphS2]
          Length = 423

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 130/368 (35%), Gaps = 38/368 (10%)

Query: 71  SPESFTGEDSAEFHVHGGIAVVNGIL-EELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
            P +F GE   E  +    A  + ++ +        R         + F    +D  E  
Sbjct: 56  HPRTFLGEGFIEDSLEKAGAAADLLIFDHDLTGNQARNIE------KRFMLPVMDRTEVI 109

Query: 130 SLADLISSETEMQRRLS-MEGMSGELSSLYGQW----IDKLTHIRSFIEADLDFSEEEDV 184
                  + T   R    +  +  EL  +   W     ++         A     E++  
Sbjct: 110 LKIFHDHARTREARLQVRLAQLKYELPRVKSMWGHLDRERFGSKAGGRVAFRGMGEKQS- 168

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY--KIVILGHSNAGKSSLFNALAKK 242
                +++  +I  ++ ++   + Q    + +R      I ++G++NAGKS+LFN L + 
Sbjct: 169 -EMDRQKLQREIYEIEKNLKRLVKQIDTQKKLRKQTCRNIGLVGYTNAGKSTLFNRLTRA 227

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV ++ D    T D  +  L L       ISDT G             + T  E E ADL
Sbjct: 228 DV-LMEDKLFATLDSTSRALPLHNNKEAVISDTVGFISNLPHHLVASFRATLKEAEEADL 286

Query: 302 ILLLKEINSKKEISFPKN------------IDFIFIGTKSDLYSTYTEE-------YDHL 342
           ++ + +I+ +       +            I  + +  K D  S  T +           
Sbjct: 287 LIHVADISDENYEKHIADVETVLKSIDADQIPHMLVFNKIDRVSKDTIKGTRNAYPNARF 346

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCG 401
           IS+ TG+ ++  +  +   L    K       S ++ ++ +    + LE    +E     
Sbjct: 347 ISAATGQNVDLFLRNLSENLYPTTKVTLLIPISEQKRIHDIHNLSKVLETTYEDESVRMT 406

Query: 402 LDIIAENL 409
           + I  E+L
Sbjct: 407 VVIAKEDL 414


>gi|284921995|emb|CBG35073.1| putative GTP-binding protein [Escherichia coli 042]
          Length = 303

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 33  SLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 91

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 92  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 149

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 150 RHILHRGHQRVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 207

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 208 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 263

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 264 ----DRIF 267


>gi|126658532|ref|ZP_01729679.1| hypothetical protein CY0110_25461 [Cyanothece sp. CCY0110]
 gi|126620119|gb|EAZ90841.1| hypothetical protein CY0110_25461 [Cyanothece sp. CCY0110]
          Length = 344

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 107/244 (43%), Gaps = 30/244 (12%)

Query: 193 LNDILFLKNDIS--SHISQGK--LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
              +  +++ ++  + +++ +     + R   K+VI G  +AGK+SL NAL  + +  V 
Sbjct: 101 RRQLETIQDKVAQKALLNRSQEIAENLTRGELKVVIFGTGSAGKTSLVNALLGEIIGQVQ 160

Query: 249 DIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLL 305
              GTT+   T  L L+G    + I+DT GI E   +  E+E + R       ADL+L +
Sbjct: 161 ATMGTTKIGETYCLKLKGLSREILITDTPGILEAGIEGTEREQLARQL--ATEADLLLFV 218

Query: 306 KEINSKK------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
            + + ++      +I        + +  K DLY+   E           + +++L  ++K
Sbjct: 219 VDNDLRQSEYKPLQILVDIGKRSLLVFNKVDLYTEEEE----------NQIIQKLKERVK 268

Query: 360 SILSNK----FKKLPFSIPSHKRHLYHLS-QTVRYLEMASLNEKDCGLDIIAENLRLASV 414
           S +  +        P +  S        S   +  ++  +   +  G D+IA+N+ L S 
Sbjct: 269 SFIPEQDVISVAANPQTFASETGQTIQPSPDILPLIKRLAAILRAEGEDLIADNILLQSQ 328

Query: 415 SLGK 418
            LG+
Sbjct: 329 RLGE 332


>gi|294496068|ref|YP_003542561.1| GTP-binding proten HflX [Methanohalophilus mahii DSM 5219]
 gi|292667067|gb|ADE36916.1| GTP-binding proten HflX [Methanohalophilus mahii DSM 5219]
          Length = 428

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 88/208 (42%), Gaps = 28/208 (13%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAK 241
           ++   +++   I  +K ++S+     +     R+G     + + G++NAGKS+LF AL  
Sbjct: 153 EDSYEQDIKKRISRIKKELSTVQRDSENLRGYRHGEGFSLLCLAGYTNAGKSTLFRALVD 212

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           ++V  V ++  TT    T  L + G    ++DT G  E       +  + T  +V  AD+
Sbjct: 213 ENV-EVENMLFTTLSPTTRYLGINGRWTLLTDTVGFIEDLPHFLVDAFRSTLEDVFRADI 271

Query: 302 ILLLKEINSKKEISFPK-------------NIDFIFIGTKSDLYS-----------TYTE 337
           ILL+ +I+   ++   K                 I    K+D  S            Y  
Sbjct: 272 ILLVVDISEPVDVIRKKLAVSHEIFWEQLEKATIITAINKADRLSPEELSSRLKSIAYLA 331

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNK 365
               ++S+ T EGL+EL + I S L   
Sbjct: 332 PNPVVVSAKTVEGLDELKDVIYSHLPEW 359


>gi|52143583|ref|YP_083245.1| GTP-binding protein [Bacillus cereus E33L]
 gi|196041267|ref|ZP_03108562.1| GTP-binding protein [Bacillus cereus NVH0597-99]
 gi|228926874|ref|ZP_04089940.1| hypothetical protein bthur0010_15900 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229090841|ref|ZP_04222069.1| hypothetical protein bcere0021_16620 [Bacillus cereus Rock3-42]
 gi|51977052|gb|AAU18602.1| GTP-binding protein [Bacillus cereus E33L]
 gi|196027975|gb|EDX66587.1| GTP-binding protein [Bacillus cereus NVH0597-99]
 gi|228692450|gb|EEL46181.1| hypothetical protein bcere0021_16620 [Bacillus cereus Rock3-42]
 gi|228832609|gb|EEM78180.1| hypothetical protein bthur0010_15900 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 419

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 111/294 (37%), Gaps = 26/294 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           +EEL+  I+S +  ++ K    IP  +  +     T  ++   S   +   L++
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNTHAHVLSTSYENEGTKLEV 404


>gi|229096353|ref|ZP_04227326.1| hypothetical protein bcere0020_16020 [Bacillus cereus Rock3-29]
 gi|229115307|ref|ZP_04244716.1| hypothetical protein bcere0017_16030 [Bacillus cereus Rock1-3]
 gi|228668139|gb|EEL23572.1| hypothetical protein bcere0017_16030 [Bacillus cereus Rock1-3]
 gi|228687313|gb|EEL41218.1| hypothetical protein bcere0020_16020 [Bacillus cereus Rock3-29]
          Length = 419

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEVPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMIDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 IEELVEMIRSYIYKEYTKCEMLIPYDQGQV 380


>gi|332298820|ref|YP_004440742.1| GTP-binding protein Era-like-protein [Treponema brennaborense DSM
           12168]
 gi|332181923|gb|AEE17611.1| GTP-binding protein Era-like-protein [Treponema brennaborense DSM
           12168]
          Length = 332

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 70/190 (36%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  + GKS+  N  + + ++IV+ +P TTR+ +   ++     +   DT G  ++D
Sbjct: 44  VAIVGRPSVGKSTFLNTASGEKISIVSPVPQTTRNAVRGIVNTSLGQLVFVDTPGYHDSD 103

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDL-- 331
             +  +       ++ +AD +L + +             E+  P     +    K DL  
Sbjct: 104 KKLNVKLKGIAAEQLSSADAVLYMIDAARAVGTEERLTAELVAPFADKTVVAVNKIDLNE 163

Query: 332 -------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                          +        IS+     + +++  +  I        P    + + 
Sbjct: 164 ANPAAARSFAASALPSVPAGRVFDISAEKDTNVNDVLRALYDIAPEAEPLYPEEFYTDQE 223

Query: 379 HLYHLSQTVR 388
             + +++ +R
Sbjct: 224 VDFRIAEIIR 233


>gi|238927458|ref|ZP_04659218.1| GTP-binding protein Era [Selenomonas flueggei ATCC 43531]
 gi|238884740|gb|EEQ48378.1| GTP-binding protein Era [Selenomonas flueggei ATCC 43531]
          Length = 299

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 22/194 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            ++G+ + ++G  N GKS+L NAL  + +AI++D P TTR  +   L  E   +   DT 
Sbjct: 4   YKSGF-VAVIGRPNVGKSTLINALIGQKIAIMSDKPQTTRSRILCILTEEDAQIIFLDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGT 327
           G+    D +     K T   +   D+++ + ++  K                   +    
Sbjct: 63  GVHRPQDRLGAYMAKATEGALHGVDVVVFVVDVTEKMGAGERYILKQLAAVQAPVLLAVN 122

Query: 328 KSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           K D         + ++Y + YD      IS+   E L  LI++IK+ L    +  P  + 
Sbjct: 123 KIDRIPHTESLPVIASYAQMYDFAAIVPISAREEENLTGLIDEIKAKLPEGPQYYPKDMV 182

Query: 375 SHKRHLYHLSQTVR 388
           + +     +++ +R
Sbjct: 183 TDQPERLIIAELIR 196


>gi|332088078|gb|EGI93203.1| GTP-binding protein Era [Shigella boydii 5216-82]
          Length = 301

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K     +  I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKVPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|311104758|ref|YP_003977611.1| GTP-binding protein Era [Achromobacter xylosoxidans A8]
 gi|310759447|gb|ADP14896.1| GTP-binding protein Era [Achromobacter xylosoxidans A8]
          Length = 296

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 26/195 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  N GKS+L NAL    ++IV+    TTR  +   L  E       DT G
Sbjct: 7   RTGF-VAIVGRPNVGKSTLTNALIGSKISIVSRKAQTTRHRIHGVLTREHEQFVFVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEV----------------ENADLILLLKEINSKKEISFPKNI 320
            +          + R   +                    D  LL      ++ I     I
Sbjct: 66  FQTRHGGAMNRMMNRVVTQALADVDVVVHVVEAGKWSEGDAKLLPLLPAPERTILVVSKI 125

Query: 321 DFIFIGTKSDLYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           D   +  + DL++  ++             S+   + L++L+ +I S L           
Sbjct: 126 DA--LKNRDDLFAFVSKIMALHPYGAVVPVSATKKQQLDQLLEEIASRLPEGEAMFEEDT 183

Query: 374 PSHKRHLYHLSQTVR 388
            + +   +  ++ VR
Sbjct: 184 LTDRPMRFIAAELVR 198


>gi|90416482|ref|ZP_01224413.1| GTP-binding protein [marine gamma proteobacterium HTCC2207]
 gi|90331681|gb|EAS46909.1| GTP-binding protein [marine gamma proteobacterium HTCC2207]
          Length = 431

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 103/287 (35%), Gaps = 25/287 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   R  I        + +      ++ + 
Sbjct: 117 RARTHEGKLQVELAQLQHLSTRLVRGWTH-LERQRGGIGMRGPGETQLESDRRMVRDRIK 175

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +    +QG+   +      + ++G++NAGKS+LFN L + DV  V +    T
Sbjct: 176 SIQSRLLKVRKQRAQGRRARVRAEVPAVSLVGYTNAGKSTLFNNLTQADV-FVANQLFAT 234

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L++     V  +DT G          +  + T  E  NA L+L + +  ++  
Sbjct: 235 LDPTMRKLEVPEQGEVVFADTVGFISHLPHRLVDAFRATLEEAANATLLLHVVDGAAEDR 294

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
            +  K             +  + +  K DL   ++   D           +S+   EGL+
Sbjct: 295 ATNIKRVEEVLKEIDAHKLPTLMVYNKVDLLEDFSARIDRNAEGQPVAVWLSALKNEGLD 354

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
            L+  +   L  +F      +   +  L     + + +    ++E  
Sbjct: 355 LLLQAVAERLPGQFVHKTLRLKPDQGALRASLYSHKAVLDEQVDENG 401


>gi|16765900|ref|NP_461515.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167992711|ref|ZP_02573807.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|194442527|ref|YP_002041843.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451061|ref|YP_002046642.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197261778|ref|ZP_03161852.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|20141303|sp|Q56057|ERA_SALTY RecName: Full=GTPase Era
 gi|226741232|sp|B4TE14|ERA_SALHS RecName: Full=GTPase Era
 gi|226741233|sp|B4T1F7|ERA_SALNS RecName: Full=GTPase Era
 gi|16421127|gb|AAL21474.1| GTPase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|194401190|gb|ACF61412.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194409365|gb|ACF69584.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197240033|gb|EDY22653.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205329140|gb|EDZ15904.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247775|emb|CBG25603.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994706|gb|ACY89591.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159128|emb|CBW18642.1| GTP-binding protein era homolog [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913569|dbj|BAJ37543.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222715|gb|EFX47786.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323130911|gb|ADX18341.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332989507|gb|AEF08490.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 301

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKVDLLPHLQFLASQMNFLDIVPISAETGMNVDTIAGIVRKHLPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|83952201|ref|ZP_00960933.1| GTP-binding protein HflX [Roseovarius nubinhibens ISM]
 gi|83837207|gb|EAP76504.1| GTP-binding protein HflX [Roseovarius nubinhibens ISM]
          Length = 425

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 102/266 (38%), Gaps = 32/266 (12%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ M  +S + + L   W   L   R  +       E +       + + + 
Sbjct: 120 AATREGVLQVEMAALSYQRTRLVRAWTH-LERQRGGLGFVGGPGETQI--EADRRAIDDQ 176

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           ++ L+  +   +    L    R       + ++G++NAGKS+LFN L   DV    D+  
Sbjct: 177 LVRLRRQLEKVVKTRTLHRAARAKVPFPIVALVGYTNAGKSTLFNRLTGSDVM-AKDMLF 235

Query: 253 TTRDVLTIDLDL--EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
            T D     + L   G  V +SDT G             + T  EV +ADL++ +++I+ 
Sbjct: 236 ATLDPTMRKVSLPHGGPDVILSDTVGFISDLPTELVAAFRATLEEVVSADLVVHVRDISH 295

Query: 311 K-------------KEISFPKNIDFIFIGTKSDLYSTYTEEY----------DHLISSFT 347
                         + +   +    I +  K+DL      E             L+S+ +
Sbjct: 296 PETEEQARDVEAILESLDVAEGTPRIELWNKADLLDPEARETFANQAARREEVILVSAVS 355

Query: 348 GEGLEELINKIKSILSNKFKKLPFSI 373
           GEG+E  +++    LS    +   ++
Sbjct: 356 GEGMEAFVDQATEALSGVQHEATITL 381


>gi|119386828|ref|YP_917883.1| small GTP-binding protein [Paracoccus denitrificans PD1222]
 gi|119377423|gb|ABL72187.1| GTP-binding protein HflX [Paracoccus denitrificans PD1222]
          Length = 435

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 93/243 (38%), Gaps = 35/243 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   ++ L+  +   +   +L    R       + ++G++NAGKS+LFN L   
Sbjct: 174 EADRRAIDEQVVRLRRQLERVVKTRELHRKARAKVPYPIVALVGYTNAGKSTLFNRLTGA 233

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V +  D    T D     L L  G  V +SDT G             + T  EV  ADL
Sbjct: 234 EV-LAQDQLFATLDPTMRQLTLPGGRRVILSDTVGFISDLPHELVAAFRATLEEVLAADL 292

Query: 302 ILLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY--------- 339
           IL +++I+  +              +   +++  I +  K D  S  T            
Sbjct: 293 ILHVRDISHPETEEQAGDVGEILDSLGVEEDVPLIEVWNKIDALSPETRAALQRTDARTQ 352

Query: 340 -DHLISSFTGEGLEELINKIK----SILSNKFKKLPFSIPS---HKRHLYHLSQTVRYLE 391
               IS+ +GEGL+ L+  I+     +L    ++    +P     +R   H    +   E
Sbjct: 353 GVQAISALSGEGLDTLLAAIEARLAEVLDEPRREAELVLPHSDGRRRAWLHEQGVITAEE 412

Query: 392 MAS 394
           +A 
Sbjct: 413 VAE 415


>gi|332159381|ref|YP_004424660.1| ferrous iron transport protein b - like protein [Pyrococcus sp.
           NA2]
 gi|331034844|gb|AEC52656.1| ferrous iron transport protein b - like protein [Pyrococcus sp.
           NA2]
          Length = 661

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 23/189 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G+ N GK+++FNAL       V + PG T +     L+ +G    + D  GI    
Sbjct: 5   VALVGNPNVGKTTIFNALTG-MRQHVGNWPGVTVEKKEGILEYKGKEYLVVDLPGIYSLT 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYST 334
                E I R F+   NAD+I+ + +            E+      + I +  K DL   
Sbjct: 64  AHSVDELIARNFILEGNADVIVDIVDSTCLMRNLFLTLELFEMGVKNIIIVLNKIDLIKK 123

Query: 335 YTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH---KRH 379
              + +               ++  GEGLEEL  KI  ++  K    P         +R 
Sbjct: 124 KGVKINIKEMEKILGVPVVPTNAKRGEGLEELKRKISLMVEGKITTNPIMPRYDDDIERE 183

Query: 380 LYHLSQTVR 388
           + H+S+ + 
Sbjct: 184 IAHISKVLE 192


>gi|292489089|ref|YP_003531976.1| GTP-binding protein Era [Erwinia amylovora CFBP1430]
 gi|292900213|ref|YP_003539582.1| GTP-binding protein [Erwinia amylovora ATCC 49946]
 gi|291200061|emb|CBJ47187.1| GTP-binding protein [Erwinia amylovora ATCC 49946]
 gi|291554523|emb|CBA22092.1| GTP-binding protein Era [Erwinia amylovora CFBP1430]
 gi|312173247|emb|CBX81502.1| GTP-binding protein Era [Erwinia amylovora ATCC BAA-2158]
          Length = 301

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGQYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + ++++ + E     +  E+   K     +  +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVEMVIFVVEGTRWTADDEMVLNKLKDGKVPVLLAINKVDNIT 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             +    H               IS+  G  ++ + + ++  L       P    + +  
Sbjct: 131 DKSILLPHLQFLGQQMNFMDVVPISAEKGSNVDTIASIVRKRLPQAEHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|183600314|ref|ZP_02961807.1| hypothetical protein PROSTU_03876 [Providencia stuartii ATCC 25827]
 gi|188020104|gb|EDU58144.1| hypothetical protein PROSTU_03876 [Providencia stuartii ATCC 25827]
          Length = 426

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 106/293 (36%), Gaps = 26/293 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 114 RARTHEGKLQVELAQLRHLSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGKIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL   + +     QG+      +   I ++G++NAGKSSLFN +   DV    D    T
Sbjct: 173 QILSRLSRVEKQREQGRQARNKADIPTISLVGYTNAGKSSLFNRMTASDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +++E    V ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRINVEDVGPVVLADTVGFIRHLPHDLVAAFKATLQETREATLLLHVIDAADSRL 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 + S  E      I  + +  K D+   +    D           +S+ TG+G+ 
Sbjct: 292 DENIHAVESVLEEIEADEIPTLLVMNKVDMLEDFIPRIDRNEDNKPVRVWVSAQTGDGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDI 404
            L+  +   LS +   +   +P  +  L      ++ +E      +   GL++
Sbjct: 352 LLLQALTERLSGEIAHVEMRLPPSEGRLRSRFYQLQAIEREWQEEDGSIGLEV 404


>gi|62391126|ref|YP_226528.1| GTP-binding protein Era [Corynebacterium glutamicum ATCC 13032]
 gi|41326465|emb|CAF20627.1| BEX PROTEIN (GTP-BINDING PROTEIN ERA HOMOLOG) [Corynebacterium
           glutamicum ATCC 13032]
          Length = 332

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 25/203 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI  + P TTR  +   +  +   + + DT G
Sbjct: 38  RSGF-VSFVGRPNTGKSTLTNALVGEKIAITANQPETTRHPIRGLVHRDNAQIIVVDTPG 96

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIG 326
           +     ++ +   +       + DLI      N K                     + I 
Sbjct: 97  LHRPRTLLGERLNEAVKDTYADVDLIGFTVPANEKIGPGDRWILEAVRKVSPKTPILGII 156

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK+D  S                       +SS +GE +E LI  +  +L    K  P  
Sbjct: 157 TKADSVSRDLVAAQLMAVHELLGGNSEVVPVSSTSGENVETLIKVMTDLLPEGPKFYPDD 216

Query: 373 IPSHKRHLYHLSQTVRYLEMASL 395
             + +     +++ +R   ++ L
Sbjct: 217 HITDEDTNTRIAEAIREAALSGL 239


>gi|225863733|ref|YP_002749111.1| GTP-binding protein [Bacillus cereus 03BB102]
 gi|225789762|gb|ACO29979.1| GTP-binding protein [Bacillus cereus 03BB102]
          Length = 419

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 111/294 (37%), Gaps = 26/294 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEVPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           ++EL+  I+S +  ++ K    IP  +  +     T  ++   S   +   L++
Sbjct: 351 IKELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNTHAHVLSTSYENEGTKLEV 404


>gi|83951644|ref|ZP_00960376.1| GTP-binding protein Era [Roseovarius nubinhibens ISM]
 gi|83836650|gb|EAP75947.1| GTP-binding protein Era [Roseovarius nubinhibens ISM]
          Length = 301

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 74/205 (36%), Gaps = 24/205 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVALEGEAQLVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFIG 326
           + +    +++  +   +    +AD+++LL E +                  +        
Sbjct: 63  LFKPRRRLDRAMVAAAWGGASDADVVVLLIEAHRGLTEGVERILEGLGDVTRGRPVALAI 122

Query: 327 TKSDLYS-----TYTEEYD--------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D          TE+ +         +IS+  G G+++L   +   L       P   
Sbjct: 123 NKIDRVKSEELLALTEKMNTRHEFVETFMISAERGHGVDDLRKWLAEQLPEGPWLYPEDQ 182

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            +        ++  R      L+++
Sbjct: 183 IADLPMRMIAAEITREKLTLRLHQE 207


>gi|325271234|ref|ZP_08137779.1| GTP-binding protein HflX [Pseudomonas sp. TJI-51]
 gi|324103637|gb|EGC00939.1| GTP-binding protein HflX [Pseudomonas sp. TJI-51]
          Length = 433

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 99/287 (34%), Gaps = 28/287 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRIR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFNAL + +V    D    T
Sbjct: 174 QIKSRLEKVRSQREQARRGRKRADIPSVSLVGYTNAGKSTLFNALTESEV-YAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L+L     + ++DT G          E  + T  E  N+DL+L + + +  + 
Sbjct: 233 LDPTLRRLELNDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDAHEPER 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +               + +  + +  K DL      +             +S+  G GLE
Sbjct: 293 MEQIEQVLAVLGEIGAEGLPILEVYNKLDLLEDVEPQIQRNADGKPERVWVSARDGRGLE 352

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
            +   I  +L    + L       ++    L      L      E D
Sbjct: 353 LVGQAIAELL---GEDLFVGTLCLEQRFARLRAQFFALGAVQSEEHD 396


>gi|237785685|ref|YP_002906390.1| putative GTP-binding protein [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758597|gb|ACR17847.1| putative GTP-binding protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 507

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 28/224 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + +  D+  L+ ++ S  +  ++    R+     +I I G++NAGKSSL NA+   
Sbjct: 243 EADRRRLRKDMARLRAELRSMTTAREIKRDRRDSSTTPQIAIAGYTNAGKSSLINAITGA 302

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +V D    T D  T   +L +G  V  SDT G          E  + +  EV +ADL
Sbjct: 303 GV-LVEDALFATLDPTTRRAELADGRAVIFSDTVGFVRHLPTQLVEAFRSSLEEVASADL 361

Query: 302 ILLLKEINSK----------KEISFPKN------IDFIFIGTKSD-----LYSTYTEEYD 340
           +L + + +            + ++  +N         I +  K D     + +    E D
Sbjct: 362 VLHVVDGSDPFPLKQIAAVHEVLADVRNSRAETMPPEIIVVNKIDQADPIVLAQLRHELD 421

Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
               +S+ TGE ++EL ++I+  L+     +   +P  +  +  
Sbjct: 422 DVVFVSAKTGENIDELASRIELFLNTLDTHVRLHVPYTRGDIVA 465


>gi|160932617|ref|ZP_02080007.1| hypothetical protein CLOLEP_01459 [Clostridium leptum DSM 753]
 gi|156868576|gb|EDO61948.1| hypothetical protein CLOLEP_01459 [Clostridium leptum DSM 753]
          Length = 419

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 78/207 (37%), Gaps = 18/207 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             +  L  +      +  H +Q +            I+G++NAGKS+L N L    V + 
Sbjct: 168 HIRRRLESLREQLAQVEQHRNQLRRRREKEGIITAAIVGYTNAGKSTLMNTLTDAGV-LA 226

Query: 248 TDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
            D    T D  +  L L  G  V + DT G+         E    T  E   AD+IL + 
Sbjct: 227 EDKLFATLDPTSRALKLPNGVSVMLIDTVGLVRRLPHHLVEAFHSTLEEAALADMILNVC 286

Query: 307 EINSKKEISFPK------------NIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEG 350
           + +S +     +                I +  K DL  +  +         IS+ TGEG
Sbjct: 287 DASSPEAQVHLEVTRKLLADLGCTGRPVIPVMNKCDLVPSLLDIPMIGNAVRISAKTGEG 346

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHK 377
           + +L+  ++  L    +++   +P  +
Sbjct: 347 IGDLLAAVEENLPVSLRRVCLLLPFDQ 373


>gi|56696948|ref|YP_167310.1| GTP-binding protein HflX [Ruegeria pomeroyi DSS-3]
 gi|56678685|gb|AAV95351.1| GTP-binding protein HflX [Ruegeria pomeroyi DSS-3]
          Length = 424

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 26/214 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   ++ LK  +   +   +L    R       + ++G++NAGKS+LFN L   
Sbjct: 167 EADRRAIDEQLVRLKRQLDKVVKTRELHRKARAKVPYPIVALVGYTNAGKSTLFNRLTGA 226

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V     +  T    +   +  +G  V +SDT G             + T  EV  ADLI
Sbjct: 227 EVMAKDMLFATLDPTMRRVVLPDGPEVILSDTVGFISDLPTELVAAFRATLEEVLAADLI 286

Query: 303 LLLKEINSKKEISFPKNIDFIF-------------IGTKSDLYS----------TYTEEY 339
           + +++I+        ++++ I              +  K DL            T  +  
Sbjct: 287 VHVRDIHHAATEEQARDVETILASLGVDEGRPKFEVWNKVDLLDPDKRAALRERTARDPS 346

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              +S+ TGEGLE L+  I   L+    +   ++
Sbjct: 347 LFAVSAVTGEGLESLLTAIAEALAETRSEAVLTL 380


>gi|218547906|ref|YP_002381697.1| GTP-binding protein Era [Escherichia fergusonii ATCC 35469]
 gi|226741215|sp|B7LUZ8|ERA_ESCF3 RecName: Full=GTPase Era
 gi|218355447|emb|CAQ88056.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia
           fergusonii ATCC 35469]
 gi|323968014|gb|EGB63426.1| GTP-binding protein Era [Escherichia coli M863]
 gi|323978404|gb|EGB73489.1| GTP-binding protein Era [Escherichia coli TW10509]
 gi|324113093|gb|EGC07069.1| GTP-binding protein Era [Escherichia fergusonii B253]
 gi|327252276|gb|EGE63948.1| GTP-binding protein Era [Escherichia coli STEC_7v]
          Length = 301

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|254453314|ref|ZP_05066751.1| GTP-binding protein Era [Octadecabacter antarcticus 238]
 gi|198267720|gb|EDY91990.1| GTP-binding protein Era [Octadecabacter antarcticus 238]
          Length = 317

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 19  RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAIEGDSQIVFVDTPG 77

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           + +    +++  +   +  V +AD+++L+ E 
Sbjct: 78  LFQPKRRLDRAMVAAAWSGVSDADVVVLMIEA 109


>gi|237785901|ref|YP_002906606.1| GTP-binding protein Era [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758813|gb|ACR18063.1| putative GTP-binding protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 310

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 24/212 (11%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           G   +  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  +   +
Sbjct: 10  GDQPDGFRSGF-VSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGVIHEDNAQI 68

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKN 319
            + DT G+     ++ +   +       + D+I +    N K                  
Sbjct: 69  IVVDTPGLHRPRTLLGERLNEVVKDTYADVDVIGVCVPANEKLGPGDRWIVENVRKVAPK 128

Query: 320 IDFIFIGTKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
           +  I I TK+D+ S                       S+     L  L++ + S L    
Sbjct: 129 MPLIGIVTKTDIASKDEIGAQLLALHDLLDGADVVPCSAKDNFQLSTLLDVLTSYLPEGP 188

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           K  P    + +     +S+ +R   ++ L ++
Sbjct: 189 KFYPDEHVTDEDRDTRISELIREAALSGLRDE 220


>gi|296140452|ref|YP_003647695.1| GTP-binding protein Era [Tsukamurella paurometabola DSM 20162]
 gi|296028586|gb|ADG79356.1| GTP-binding protein Era [Tsukamurella paurometabola DSM 20162]
          Length = 318

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 80/217 (36%), Gaps = 26/217 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    VAI +  P TTR  +   ++     + + DT G
Sbjct: 16  RSGF-VCFVGRPNTGKSTLTNALVGSKVAITSSRPQTTRSTIRGIVNRPNCQLVLVDTPG 74

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIG 326
           +     ++ +             D+I L    + K          +          + + 
Sbjct: 75  LHRPRTLLGQRLNDLVRDTYSEVDIICLTIPADEKIGPGDKYILDQVRHMAPRTPLLGVV 134

Query: 327 TKSD------------LYSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D              S +  E      +S+ +GE +E+L+  + S +       P  
Sbjct: 135 TKIDKVGRDKVAEQLLAVSKFLGENSDVIPVSAASGEQVEDLVQLLASKMQPGPAFYPDG 194

Query: 373 IPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAEN 408
             +       +++ +R   +  + +E    L ++ E 
Sbjct: 195 EVTDTDDDTMMAELIREAALEGVRDELPHSLAVVIEE 231


>gi|240143896|ref|ZP_04742497.1| GTP-binding protein HflX [Roseburia intestinalis L1-82]
 gi|257204088|gb|EEV02373.1| GTP-binding protein HflX [Roseburia intestinalis L1-82]
          Length = 414

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 34/240 (14%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           K+ +  +     ++  H    +     +      I+G++NAGKS+L N L    V +  D
Sbjct: 172 KDRIAQLNRELKEVRKHREITRAQREKKQIPVAAIVGYTNAGKSTLLNHLTGAGV-LEED 230

Query: 250 IPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D  T  L+L G   + ++DT G          E  K T  E + AD I+ + + 
Sbjct: 231 KLFATLDPTTRVLELPGRQEILLTDTVGFIRKLPHHLIEAFKSTLEEAKYADYIVHVVDA 290

Query: 309 NSKKEIS------------FPKNIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEG 350
           ++ +                 +    I +  K D          +  +Y   +S+  G G
Sbjct: 291 SNPQRDKQMHIVYDTLYQLDIREKTVITLFNKQDQVTDEEPIRDFKADYTLAVSAKKGTG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           LEEL     ++L +              +   + +T+ Y E   L +     +++ E  R
Sbjct: 351 LEELKELFCTLLRD--------------NKILVERTISYQEAGILQQIRKSGELLEEEYR 396


>gi|307150189|ref|YP_003885573.1| small GTP-binding protein [Cyanothece sp. PCC 7822]
 gi|306980417|gb|ADN12298.1| small GTP-binding protein [Cyanothece sp. PCC 7822]
          Length = 530

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 26/245 (10%)

Query: 190 KEVLNDILFLKNDIS--SHISQGKLGE--IIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           K V   +  +++ +S  + +S+ +  E  + R   ++V+ G  +AGK+SL NAL  + V 
Sbjct: 99  KAVKRQVQQIQDKVSQKALLSRSQEIEANLARGELRVVVFGTGSAGKTSLVNALIGEMVG 158

Query: 246 IVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            V    GTT+   T  L L+G    + I+DT GI E   I   +  +        ADL+L
Sbjct: 159 NVEATMGTTQIGETYRLKLKGISREILITDTPGILEAG-IAGTQREQLARQLATEADLLL 217

Query: 304 LLKEINSKKEISFPKNIDFI------FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            + + + ++    P  +          I  K+DLYS   +E          + +++ IN 
Sbjct: 218 FVIDNDLRQSEYEPLRMLVGIGKRSLLIFNKTDLYSDEDQEVILNQLK---QRVQDFINA 274

Query: 358 IKSILSNKFKK----LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
              +      +        +   +  +  L + +  +  A       G D+IA+N+ L S
Sbjct: 275 ADIVALAANPQPVQLENGELIQPEPDIIPLIKRLAAILRAE------GEDLIADNILLQS 328

Query: 414 VSLGK 418
             LG+
Sbjct: 329 QRLGE 333


>gi|323136434|ref|ZP_08071516.1| GTP-binding proten HflX [Methylocystis sp. ATCC 49242]
 gi|322398508|gb|EFY01028.1| GTP-binding proten HflX [Methylocystis sp. ATCC 49242]
          Length = 444

 Score = 74.5 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 104/260 (40%), Gaps = 37/260 (14%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ + S L   W   L   R          E +   +   + +  
Sbjct: 128 RARTKEGALQVELAHLAYQKSRLVRSWTH-LERQRGGFGFLGGPGETQIETD--RRLIEE 184

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            +  ++ D+        L    R       + ++G++NAGKS+LFN L K +V +  D+ 
Sbjct: 185 RMRRIEQDLDKVKRTRGLHRKTRREVPYPVVALVGYTNAGKSTLFNRLTKAEV-LAQDML 243

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G       +     + T  EV  AD+IL +++++ 
Sbjct: 244 FATLDPTLRQIRLPHGARVLLSDTVGFISDLPTMLVSAFRATLEEVTLADVILHVRDVSH 303

Query: 311 KKEISFPKNIDFIF---------------IGTKSDLYSTYTEEY-------------DHL 342
           +   +  ++++ I                +  K D      +E                L
Sbjct: 304 EDSEAQARDVETILDELGLKGEAEGRILEVWNKIDALDPERQEALRQTARGFDPQRRPVL 363

Query: 343 ISSFTGEGLEELINKIKSIL 362
            S+ TG+GL+EL+ +I++IL
Sbjct: 364 ASALTGQGLDELLARIETIL 383


>gi|119961417|ref|YP_947969.1| GTP-binding protein Era [Arthrobacter aurescens TC1]
 gi|119948276|gb|ABM07187.1| GTP-binding protein Era [Arthrobacter aurescens TC1]
          Length = 347

 Score = 74.5 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 9/120 (7%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           V++G  NAGKS+L NAL  + VAI +  P TTR  +   +  +   + + DT G+     
Sbjct: 50  VLVGRPNAGKSTLTNALVGQKVAITSAKPQTTRHTIRGIVHRDDAQLILVDTPGLHRPRT 109

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYS 333
           ++ K   +     +   D I      N K          +++       + + TK+DL  
Sbjct: 110 LLGKRLNELVADTLAEVDAIGFCLPANEKIGPGDKYIAAQLAAVGRKPIVALVTKTDLVD 169


>gi|308187805|ref|YP_003931936.1| GTP-binding protein [Pantoea vagans C9-1]
 gi|308058315|gb|ADO10487.1| GTP-binding protein [Pantoea vagans C9-1]
          Length = 301

 Score = 74.5 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 67/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGNYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E        E+   K     +  +    K D   
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRENKVPVVLAVNKVDNIQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             T    H               IS+ +G+ ++ +    +  L       P    + +  
Sbjct: 131 DKTILLPHLQFLSQQMNFLDIVPISAESGKNVDTIAAITRKHLPQADHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEMIR 199


>gi|237733678|ref|ZP_04564159.1| GTP-binding protein hflX [Mollicutes bacterium D7]
 gi|229383276|gb|EEO33367.1| GTP-binding protein hflX [Coprobacillus sp. D7]
          Length = 414

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 95/280 (33%), Gaps = 18/280 (6%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           + ++T+  +          L        + L   +          ++ ++        + 
Sbjct: 111 VRAKTKEAKLQVEIAKGQYLLPRLAGMKEHLYSQQGGSGFRGSGEKQIELDRRLVSNQIF 170

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA--KKDVAIVTDIPG 252
           +      +I       +          I ++G++N+GKS+L NA    K    +  D+  
Sbjct: 171 NAKKQLANIVKQRQNQRKRRKDNEMKVIALVGYTNSGKSTLMNAFCLNKNKQVLQKDMLF 230

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
            T +  T  + +  +   ++DT G  E       +  + T  EV  ADL++ + + ++  
Sbjct: 231 ATLETATRHITINQHPCLLTDTVGFIERLPHHLIQAFRSTLEEVVEADLLIHVVDASNPN 290

Query: 313 EISF------------PKNIDFIFIGTKSDLYS---TYTEEYDHLISSFTGEGLEELINK 357
              +             K+   I+   K DL         E    IS+    GLE L   
Sbjct: 291 YEQYINTTNAVLKELGIKDTPMIYAYNKVDLNKYGFIVPLEPYAFISAKERIGLEVLEKS 350

Query: 358 IKSILSNKFKKLPFSIPSHKRHLY-HLSQTVRYLEMASLN 396
           I  IL   +     +IP     ++ +L Q    LE   L 
Sbjct: 351 ISDILFKDYAIYDLNIPYQDGEVFKYLHQHCLVLEFQYLE 390


>gi|206974991|ref|ZP_03235906.1| GTP-binding protein [Bacillus cereus H3081.97]
 gi|206747010|gb|EDZ58402.1| GTP-binding protein [Bacillus cereus H3081.97]
          Length = 419

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 111/294 (37%), Gaps = 26/294 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    +++L       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIELPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           +EEL+  I+S +  ++ K    IP  +  +     T  ++   S   +   L++
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNTHAHVLSTSYENEGTKLEV 404


>gi|37528399|ref|NP_931744.1| putative GTPase HflX [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787837|emb|CAE16952.1| GTP-binding protein [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 426

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 87/229 (37%), Gaps = 29/229 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + + + I  + N +S    Q + G   RN      + ++G++NAGKSSLFN +   +V
Sbjct: 163 DRRLLRDKIRQILNRLSRVEKQREQGRQARNKADIPTVSLVGYTNAGKSSLFNRMTAAEV 222

Query: 245 AIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D     +D+     V ++DT G             K T  E   A L+L
Sbjct: 223 -YAADQLFATLDPTLRRIDVNDVGTVVLADTVGFIRHLPHDLVAAFKATLQETRQATLLL 281

Query: 304 LLKE------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HL 342
            + +            ++S  E      I  + +  K D+  ++T   D           
Sbjct: 282 HIVDAADSRIDENIAAVDSVLEEIEAHEIPVLLVMNKIDMLDSFTPRIDRNEDNLPVRVW 341

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
           +S+ TGEG+  L+  +   LS +       +P      R  ++  Q + 
Sbjct: 342 LSAQTGEGIPLLLQALTERLSGEIAHYELRLPPEAGRLRSRFYQLQAIE 390


>gi|313672666|ref|YP_004050777.1| gtp-binding protein hflx [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939422|gb|ADR18614.1| GTP-binding protein HflX [Calditerrivibrio nitroreducens DSM 19672]
          Length = 552

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 21/231 (9%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
           D L+ +   I        + ++     ++ +  +     DI S     ++    +N   +
Sbjct: 316 DSLSRLTGGIGGRGPGETKLEIDKRRIRDRIAFLTNKLKDIESVRQTQRVKRTRKNLPIV 375

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETD 281
            I+G++NAGKS+L N L K DV    ++   T D  +  L   E     ++DT G     
Sbjct: 376 SIVGYTNAGKSTLLNNLTKSDV-YADNLMFATLDTTSKRLRFPEDRECILTDTVGFIRNL 434

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTKS 329
               K   K T  E+E +DL + L +I++ +            E     +   I +  K 
Sbjct: 435 PESLKGAFKSTLEELEESDLFIHLVDISNTQYKKQIDAVNQIFEELKLNDKPKIMVFNKI 494

Query: 330 DLYST-----YTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           DL          ++Y     IS+   +  EELI KI  IL    KKL   +
Sbjct: 495 DLVDKQVITEAQKDYPEAIFISALNKKTFEELIIKINHILFVGGKKLGIPV 545


>gi|301053404|ref|YP_003791615.1| GTP-binding protein [Bacillus anthracis CI]
 gi|300375573|gb|ADK04477.1| GTP-binding protein [Bacillus cereus biovar anthracis str. CI]
          Length = 419

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 111/294 (37%), Gaps = 26/294 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           +EEL+  I+S +  ++ K    IP  +  +     T  ++   S   +   L++
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNTHAHVLSTSYENEGTKLEV 404


>gi|193213958|ref|YP_001995157.1| GTP-binding proten HflX [Chloroherpeton thalassium ATCC 35110]
 gi|193087435|gb|ACF12710.1| GTP-binding proten HflX [Chloroherpeton thalassium ATCC 35110]
          Length = 432

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 94/257 (36%), Gaps = 27/257 (10%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + +++     ++ +  +   L  L  QW    TH+             E       + + 
Sbjct: 124 VRAKSAQAKHQVELAQLEYLLPRLTRQW----THLSKQKGGIGTKGPGETQIETDRRLIW 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
             I  LK  +  H  Q +     R+   KI ++G++NAGKS+L NAL  K  A   D   
Sbjct: 180 RRISTLKQKLKEHSRQRETRTSWRDSITKIALVGYTNAGKSTLMNALCPKANAYSEDRLF 239

Query: 253 TTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE---- 307
            T D  T  L L+      +SDT G          E  K T  EV  AD++L + +    
Sbjct: 240 ATLDTTTRRLHLKQNKQAILSDTVGFIRKLPHNLVESFKSTLEEVREADILLHVVDVSHP 299

Query: 308 --------INSKKEISFPKNIDFIFIGTKSDLYSTY--------TEEYDHLISSFTGEGL 351
                   ++   +    KN   I +  K D               E   LIS+  G  L
Sbjct: 300 SFEEHIRIVDETLDEIGAKNKQTILVLNKIDRLEQNDTFLGLAQKFEGSVLISAARGINL 359

Query: 352 EELINKIKSILSNKFKK 368
             L+ ++  ++   F +
Sbjct: 360 SGLMERLSDLIQADFDE 376


>gi|303232238|ref|ZP_07318937.1| GTP-binding protein Era [Atopobium vaginae PB189-T1-4]
 gi|302481648|gb|EFL44709.1| GTP-binding protein Era [Atopobium vaginae PB189-T1-4]
          Length = 306

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 83/203 (40%), Gaps = 23/203 (11%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           +     E  ++G+ + ++G  + GKS+L NA     +AI + +  TTR  L   +  +  
Sbjct: 4   NTTAQHEGFKSGF-VALVGRPSVGKSTLLNACYGGKIAITSKVAQTTRKRLRAVITSDTS 62

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDF-- 322
            + + DT G+ +  D + K   +   LE+ + +++ LL +  +   + ++   K++    
Sbjct: 63  QIILVDTPGLHKPQDALGKTLNQTALLELNDVEVVALLVDATAPIGRGDMWVAKHVHASS 122

Query: 323 ----IFIGTKSDLYSTYTEEYDHLISSFTGE-------------GLEELINKIKSILSNK 365
               I + TK+D  +    +     SS  G              G+ E +++I+  L   
Sbjct: 123 AAYKILVLTKADKATQAQVKAQLEASSMLGSFDDTLVVCATQQFGVSEFLHRIEDHLPEG 182

Query: 366 FKKLPFSIPSHKRHLYHLSQTVR 388
                  +         +S+ +R
Sbjct: 183 PHWFFDDMDVDATDEELMSEFIR 205


>gi|228920575|ref|ZP_04083920.1| hypothetical protein bthur0011_15900 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839205|gb|EEM84501.1| hypothetical protein bthur0011_15900 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 419

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 101/270 (37%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KEINSKKEISFP------------KNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +  + K                 +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPKYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKQVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQV 380


>gi|168705648|ref|ZP_02737925.1| tRNA modification GTPase TrmE [Gemmata obscuriglobus UQM 2246]
          Length = 101

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 5   KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASL-RYFFGLDGRILD 62
            +T+  V T     AI+ + + GP  +++   + K   KP P    + R++FG  G   D
Sbjct: 2   SDTLVTVLTPPGTGAIATVEVRGPRAWELARALFKPAGKPLPEAPDVDRFWFGTLGA--D 59

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112
           + +L +       T  D+ E H HGG  VV  ++E+       R A    
Sbjct: 60  EVVLAI-------TAPDAVEVHCHGGRRVVRWVVEQFL-TSGAREAGGTG 101


>gi|167755450|ref|ZP_02427577.1| hypothetical protein CLORAM_00964 [Clostridium ramosum DSM 1402]
 gi|167704389|gb|EDS18968.1| hypothetical protein CLORAM_00964 [Clostridium ramosum DSM 1402]
          Length = 414

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 95/280 (33%), Gaps = 18/280 (6%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           + ++T+  +          L        + L   +          ++ ++        + 
Sbjct: 111 VRAKTKEAKLQVEIAKGQYLLPRLAGMKEHLYSQQGGSGFRGSGEKQIELDRRLVSNQIF 170

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA--KKDVAIVTDIPG 252
           +      +I       +          I ++G++N+GKS+L NA    K    +  D+  
Sbjct: 171 NAKKQLANIVKQRQNQRKRRKDNEMKVIALVGYTNSGKSTLMNAFCLNKNKQVLQKDMLF 230

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
            T +  T  + +  +   ++DT G  E       +  + T  EV  ADL++ + + ++  
Sbjct: 231 ATLETATRHITINQHPCLLTDTVGFIERLPHHLIQAFRSTLEEVVEADLLIHVVDASNPN 290

Query: 313 EISF------------PKNIDFIFIGTKSDLYS---TYTEEYDHLISSFTGEGLEELINK 357
              +             K+   I+   K DL         E    IS+    GLE L   
Sbjct: 291 YEQYINTTNAVLKELGIKDTPMIYAYNKVDLNKYGFIVPLEPYAFISAKERIGLEVLEKS 350

Query: 358 IKSILSNKFKKLPFSIPSHKRHLY-HLSQTVRYLEMASLN 396
           I  IL   +     +IP     ++ +L Q    LE   L 
Sbjct: 351 ISDILFKDYAIYDLNIPYQDGEVFKYLHQHCLVLEFQYLE 390


>gi|333001659|gb|EGK21226.1| GTP-binding protein Era [Shigella flexneri K-272]
 gi|333015935|gb|EGK35270.1| GTP-binding protein Era [Shigella flexneri K-227]
          Length = 301

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|218674750|ref|ZP_03524419.1| GTP-binding protein [Rhizobium etli GR56]
          Length = 397

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 31/219 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + I+ L+ ++   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 166 EADRRLLQDRIIKLERELEQVVRTRQLHRAKRRKVPHPIVALVGYTNAGKSTLFNRITGA 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 226 GV-LAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISDLPTHLVAAFRATLEEVLEADL 284

Query: 302 ILLLKEINSKKEISFPKNIDFIF----------------IGTKSDLYSTYTEEY------ 339
           IL +++++     +   ++  I                 +  K D       +       
Sbjct: 285 ILHVRDMSDPDNQAQSSDVMRILGDLGIDEAEAEKRLIEVWNKIDRLEPEVHDAMVQKAA 344

Query: 340 ----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                  +S+ +GEG++ L+ +I   LS    + P + P
Sbjct: 345 GASNVVAVSAVSGEGVDTLMEEISRRLSGVMTEPPSAFP 383


>gi|188533139|ref|YP_001906936.1| GTP-binding protein Era [Erwinia tasmaniensis Et1/99]
 gi|188028181|emb|CAO96039.1| GTP-binding protein [Erwinia tasmaniensis Et1/99]
          Length = 301

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGQYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + ++++ + E        E+   K     +  +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVEMVIFVVEGTRWTPDDEMVLNKLKDGKVPVLLAINKVDNIT 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             +    H               IS+  G  ++ + N ++  L       P    + +  
Sbjct: 131 DKSILLPHLQFLGQQMNFMDVVPISAEKGNNVDTIANIVRKRLPEAEHHFPEEYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|167771317|ref|ZP_02443370.1| hypothetical protein ANACOL_02675 [Anaerotruncus colihominis DSM
           17241]
 gi|167666568|gb|EDS10698.1| hypothetical protein ANACOL_02675 [Anaerotruncus colihominis DSM
           17241]
          Length = 438

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 58/313 (18%), Positives = 113/313 (36%), Gaps = 39/313 (12%)

Query: 96  LEELAKMPNLRLA----NPGEFSRRAFENGK-IDLLEAESLADLISSETEMQRRLSMEGM 150
           L +L +     L            R  EN   + +++  +L   I ++  +         
Sbjct: 92  LAQLCENDGADLVIFDCELSPAQLRNIENACGVAVIDRTALILDIFAQRAVTA------- 144

Query: 151 SGELSSLYGQWIDKLTHI------RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS 204
            G+L     Q   +L  +       S +   +      + Q  + +  +   +    +  
Sbjct: 145 EGKLQVELAQLRYRLPRLGGMGKALSRLGGGIGTRGPGETQLETDRRHIRRRIAALQEQL 204

Query: 205 SHISQGK---LGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + + + +        + G   + I+G++N GKS+L NAL    V +  D    T D  + 
Sbjct: 205 AELKKRRGLLRARRKKEGVTTVAIVGYTNVGKSTLLNALTGAGV-LSEDKLFATLDPTSR 263

Query: 261 DLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--- 316
            L L +G  V + DT G+         E  + T  E   ADL+  + +  S +       
Sbjct: 264 ALTLPDGRSVMLIDTVGLVRRLPHQLVEAFQSTLEEAAGADLLWCVCDAASDEMAEQVDV 323

Query: 317 ---------PKNIDFIFIGTKSDLYSTYTEEYDHL---ISSFTGEGLEELINKIKSILSN 364
                     ++I  + I  K DL +      +     IS+ TG G + L+ K   +L+ 
Sbjct: 324 TRQLMRELGAQDIPMLVILNKCDLVADVPRALNQQTALISARTGFGFDMLLQKTSELLAP 383

Query: 365 KFKKLPFSIPSHK 377
             +++   +P  K
Sbjct: 384 THRRVTLMLPYDK 396


>gi|217959357|ref|YP_002337905.1| GTP-binding protein [Bacillus cereus AH187]
 gi|222095497|ref|YP_002529557.1| gtp-binding protein [Bacillus cereus Q1]
 gi|229138573|ref|ZP_04267157.1| hypothetical protein bcere0013_16890 [Bacillus cereus BDRD-ST26]
 gi|229196080|ref|ZP_04322832.1| hypothetical protein bcere0001_16420 [Bacillus cereus m1293]
 gi|217063755|gb|ACJ78005.1| GTP-binding protein [Bacillus cereus AH187]
 gi|221239555|gb|ACM12265.1| GTP-binding protein [Bacillus cereus Q1]
 gi|228587462|gb|EEK45528.1| hypothetical protein bcere0001_16420 [Bacillus cereus m1293]
 gi|228644852|gb|EEL01100.1| hypothetical protein bcere0013_16890 [Bacillus cereus BDRD-ST26]
          Length = 419

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 111/294 (37%), Gaps = 26/294 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           ++EL+  I+S +  ++ K    IP  +  +     T  ++   S   +   L++
Sbjct: 351 IKELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNTHAHVLSTSYENEGTKLEV 404


>gi|126666952|ref|ZP_01737928.1| GTPase [Marinobacter sp. ELB17]
 gi|126628668|gb|EAZ99289.1| GTPase [Marinobacter sp. ELB17]
          Length = 432

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 96/253 (37%), Gaps = 25/253 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +E + 
Sbjct: 114 RARTHEGKLQVELAQLQHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRERIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   +  +   + ++G++NAGKS+LFN +   DV    D    T
Sbjct: 173 SINKRLEKVRRQRDQGRRARVRADLPTVSLVGYTNAGKSTLFNRITSSDV-YTADQLFAT 231

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L+L     V ++DT G          E  + T  E   A L+L + + + ++ 
Sbjct: 232 LDPTMRRLELPDIGAVILADTVGFIRHLPHKLVESFRATLEETNEAALLLHVIDCHDERR 291

Query: 314 ---ISFPKN---------IDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLE 352
              I+  +N         +  + +  K+DL   +    D           +S+ TG+GL+
Sbjct: 292 DDNIAQVENVLAEIGADEVPVLQVFNKTDLLDDFVPRVDRNQEGVPVRAWVSAVTGDGLQ 351

Query: 353 ELINKIKSILSNK 365
            L + +   L+  
Sbjct: 352 GLFDAVVERLAQD 364


>gi|90022311|ref|YP_528138.1| putative GTP-binding protein [Saccharophagus degradans 2-40]
 gi|89951911|gb|ABD81926.1| Small GTP-binding protein domain [Saccharophagus degradans 2-40]
          Length = 441

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 95/270 (35%), Gaps = 25/270 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 115 RARTHEGKLQVELAQLQHMSTRLIRGWTH-LERQKGGIGMRGPGETQLETDRRLLRARIK 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I    + +     QG+          + ++G++NAGKS+LFNA+    V    D    T
Sbjct: 174 SIHKRLDRVRKQREQGRRARNRAEIPTLSLVGYTNAGKSTLFNAITDAGV-YAEDKLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     + L       ++DT G          E  + T  E  +AD++L + +    + 
Sbjct: 233 LDPTMRRIGLRDVGPAILADTVGFISNLPHRLVEAFRATLEEAASADILLHVVDAADDER 292

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
               +            ++  + +  K DL S      D           +S+ +G G+E
Sbjct: 293 ARNIEQVKLVLNEIGAGDLPVLMVHNKIDLLSNVDARIDRDDLGKPVAVWLSAQSGAGIE 352

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           +L+  I  +LS+        +P+    L  
Sbjct: 353 QLMEAITELLSDNIVHQKVLLPASMGSLRA 382


>gi|310764814|gb|ADP09764.1| GTP-binding protein Era [Erwinia sp. Ejp617]
          Length = 301

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGQYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + ++++ + E     +  E+   K     +  +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVEMVIFVVEGTRWTADDEMVLNKLKDGKVPVLLAINKVDNIT 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             +    H               IS+  G  ++ + + ++  L       P    + +  
Sbjct: 131 DKSILLPHLQFLGQQMNFMDVVPISAEKGSNVDTIASIVRKRLPEAEHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|303257596|ref|ZP_07343608.1| GTP-binding protein HflX [Burkholderiales bacterium 1_1_47]
 gi|302859566|gb|EFL82645.1| GTP-binding protein HflX [Burkholderiales bacterium 1_1_47]
          Length = 373

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 77/223 (34%), Gaps = 24/223 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+  +     Q       R       + ++G++NAGKS+LFN L + 
Sbjct: 152 ELDRRMIATRVKALREQLKKLERQRNTQRKSRQRGEVLTVALVGYTNAGKSTLFNRLTRG 211

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V     +  T               V +SDT G          E  K T  E   ADL+
Sbjct: 212 GVYAADQLFATLDTTARRCFVGGDVEVVLSDTVGFIRGLPHQLIEAFKSTLDEAAQADLL 271

Query: 303 LLLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTYT--------EEYDHL 342
           L + + ++              E    K+I  + +  K DL                   
Sbjct: 272 LHVVDSSTPAREEQMTEVNKVLEEIGAKDIPQLLVFNKIDLEGRSPFITCAEDGTPKAVG 331

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           IS+  GEG++ L + I+ I   K  + P   P ++  L    +
Sbjct: 332 ISAANGEGIDLLKDAIRQIA-EKEPEEPQEAPDNEDWLAEFER 373


>gi|266625814|ref|ZP_06118749.1| GTP-binding protein HflX [Clostridium hathewayi DSM 13479]
 gi|288862283|gb|EFC94581.1| GTP-binding protein HflX [Clostridium hathewayi DSM 13479]
          Length = 214

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 20/189 (10%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           + +  +     D+  H    +      +     I+G++NAGKS+L N L    + +  D 
Sbjct: 27  DRIGQLKAELEDVKRHRDVARQQRTRNHTPVAAIVGYTNAGKSTLLNTLTDAGI-LAEDK 85

Query: 251 PGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D  T +L+L  G  + ++DT G          E  K T  E + +D+IL + + +
Sbjct: 86  LFATLDPTTRNLELPGGEQILLTDTVGFIRKLPHNLIEAFKSTLEEAKYSDIILHVVDCS 145

Query: 310 SKKEISFP------------KNIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEGL 351
           + +                  + + I +  K D      +    + +Y   IS+ TGEGL
Sbjct: 146 NPQMDMQMYVVYETLKDLGVHDKEVITVFNKIDAAGEMRIPRDLSSDYQVKISAKTGEGL 205

Query: 352 EELINKIKS 360
           +EL+N ++S
Sbjct: 206 DELLNLLES 214


>gi|254173129|ref|ZP_04879802.1| GTP-binding proten HflX [Thermococcus sp. AM4]
 gi|214032538|gb|EEB73367.1| GTP-binding proten HflX [Thermococcus sp. AM4]
          Length = 428

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 18/166 (10%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL---GHSNAGKSSLFNALAKKDVAI 246
           K +   +  ++ ++    +   +    R     +++   G++NAGKS+L NALA +  A 
Sbjct: 153 KHIRYRMGKIRKELERVRADRDVKRKRREELGFLLIALAGYTNAGKSTLLNALAGES-AE 211

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             D   TT D  T    L    V ++DT G  +       E    T  E+  AD++LL+ 
Sbjct: 212 ARDQMFTTLDTRTRRFKLGRKRVLLTDTVGFIDNLPPFIVEAFHSTLEEIVKADIVLLVL 271

Query: 307 EINSKKEISFPK--------------NIDFIFIGTKSDLYSTYTEE 338
           +++        K              +   + +  K+DL S    E
Sbjct: 272 DVSEPWAEVRRKLMASIDVLRELKTLDKPMVVVLNKTDLTSREDAE 317


>gi|256830504|ref|YP_003159232.1| GTP-binding protein Era [Desulfomicrobium baculatum DSM 4028]
 gi|256579680|gb|ACU90816.1| GTP-binding protein Era [Desulfomicrobium baculatum DSM 4028]
          Length = 305

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 87/232 (37%), Gaps = 38/232 (16%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R G+ I ++G  NAGKS+  N +  + +AIV+  P TTR  +T         +   DT 
Sbjct: 5   YRAGF-IALVGPPNAGKSTFLNKVLGEKIAIVSPKPQTTRTSITGIHTTAEEQIIFLDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFPKN------------ID 321
           G+      + +  +   +  ++ A+ ++L  + +  +  E +  ++            + 
Sbjct: 64  GVHTARGKLNRFLVDAAWGALQEANGVILFLDGSRYAGNEKALERDLRPLASRIGSLGVP 123

Query: 322 FIFIGTKSD----------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFK 367
                 K D          L +   E +       IS+ TG G++ L+  ++  L     
Sbjct: 124 MAVALNKVDQIKPKERLLGLLADCAERWPGVELVPISARTGVGVDGLLAVVREFLPLSPA 183

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI---IAENLRLASVSL 416
             P    S     +  S+ VR     +L++     ++   +A  +      L
Sbjct: 184 LFPEDQLSTASVRFMASEIVREKLFLALDQ-----ELPYNVAVEI-ETWEEL 229


>gi|253988787|ref|YP_003040143.1| GTP-binding protein Era [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780237|emb|CAQ83398.1| gtp-binding protein era [Photorhabdus asymbiotica]
          Length = 302

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGTYQTIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSD--- 330
              + +   +     + + +L++ + E        E+   K        +    K D   
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTHWTPDDEMVLNKLRNLRCPVLLAINKVDNVI 130

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L           +S+  G  ++ +   ++  +       P    + +  
Sbjct: 131 DKAILLPHIGFLSKQMNFLDVVPMSAEKGMNVDTIAKIVRGHMPQATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|325496354|gb|EGC94213.1| GTP-binding protein Era [Escherichia fergusonii ECD227]
          Length = 301

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFIDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|284006627|emb|CBA71888.1| GTP-binding protein [Arsenophonus nasoniae]
          Length = 432

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 101/283 (35%), Gaps = 28/283 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 116 RARTHEGKLQVELAQLRHISTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLIRGKIR 174

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+          I ++G++NAGKSSLFN + K +V    D    T
Sbjct: 175 QILSRLAKVEKQREQGRQARTKAGIPTISLVGYTNAGKSSLFNQMTKSEV-YAADQLFAT 233

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D++    + ++DT G             K T  E   A L+L + +      
Sbjct: 234 LDPTLRRIDIDDVGAIVLADTVGFIRHLPHDLVAAFKATLQETREASLLLHVVDAVDNRM 293

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 + S  E      I  + +  K D+ + +    D           +S+ TGEG+ 
Sbjct: 294 EENIQAVESVLEEIEANEIPALLVMNKIDMLNGFIPRIDRDENNVPIRVWLSAQTGEGIP 353

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVRYLEM 392
            L+  +   LS +       +P      R  ++  Q + Y EM
Sbjct: 354 LLLQALTERLSGEIAHYELRLPPEAGRLRSRFYQLQAIEYEEM 396


>gi|254475433|ref|ZP_05088819.1| GTP-binding proten HflX [Ruegeria sp. R11]
 gi|214029676|gb|EEB70511.1| GTP-binding proten HflX [Ruegeria sp. R11]
          Length = 423

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 28/219 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   ++ L+  +   +    L    R       + ++G++NAGKS+LFN L   
Sbjct: 166 EADRRAIDEQLVRLRRQLDKVVKTRTLHRAARAKVPYPIVALVGYTNAGKSTLFNRLTGA 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V    D+   T D     ++L +G  + +SDT G             + T  EV  AD+
Sbjct: 226 EVM-AKDMLFATLDPTMRRVELPDGPEIILSDTVGFISDLPTELVAAFRATLEEVLAADV 284

Query: 302 ILLLKEINSKKEISFPKNIDFIF-------------IGTKSDLYS----------TYTEE 338
           ++ +++I+ ++  +   +++ I              +  K DL S             E+
Sbjct: 285 VVHVRDISHEESQNQADDVEAILTSLGVDDSRARIEVWNKLDLLSEDEAEARRQRAERED 344

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
             H IS+ +GEGL  L+  I   L +   +   ++   +
Sbjct: 345 GIHAISAISGEGLPRLLADIAEKLRSVRHEDDITLTFAQ 383


>gi|71408039|ref|XP_806448.1| small GTP-binding protein [Trypanosoma cruzi strain CL Brener]
 gi|70870198|gb|EAN84597.1| small GTP-binding protein, putative [Trypanosoma cruzi]
          Length = 571

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 64/179 (35%), Gaps = 34/179 (18%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR---------------NGYKIVILGHSNAGK 232
             +E +     + NDIS  +      +  R                  ++ I+G  N+GK
Sbjct: 56  DWREQVRRSGGVLNDISPALPDSNRTDDQRKRVAGWQPVVKLLGDQRLRVAIVGRMNSGK 115

Query: 233 SSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
           SSLFN L++         IV D  G TRD +     LEG    I DT G+     + E  
Sbjct: 116 SSLFNLLSEDPTMPHRKNIVRDFDGITRDSVEGHAQLEGMHFTIIDTPGMVNGKLVEE-- 173

Query: 288 GIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEE 338
                F  VE AD  + +  ++     +          K +    +  K DL     E+
Sbjct: 174 ----AFRTVETADAAIFVTSVDEDLHSAEFDLIHYLQLKCMPTFVLVNKMDLVPLDEED 228



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 73/189 (38%), Gaps = 28/189 (14%)

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
             +    ++ L HI S  + + D+    D+++ + +   + +  +++             
Sbjct: 253 MEMLAAVLEPLYHIHSMQKVENDW----DIEDLAMQGDESAMEEIRD-----------RN 297

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
                 +I ++G +N+GKSSL N L   + +   D   +TRD + +    +G  VK+ DT
Sbjct: 298 CADRFIRIALVGRTNSGKSSLINRLVGFERSRAVDEKNSTRDPVELPCIYKGRKVKLIDT 357

Query: 275 AGIR----ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF---------PKNID 321
           AG+       D          +  E+  A +++++ +        +          +   
Sbjct: 358 AGLTRNRFRADRDFIGRIHDLSVNEIRYAHVVIVVFDATEGHPNKYDMAVLHSVAAEGRP 417

Query: 322 FIFIGTKSD 330
           F+    K D
Sbjct: 418 FLLCANKWD 426


>gi|289547854|ref|YP_003472842.1| GTP-binding proten HflX [Thermocrinis albus DSM 14484]
 gi|289181471|gb|ADC88715.1| GTP-binding proten HflX [Thermocrinis albus DSM 14484]
          Length = 368

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 98/282 (34%), Gaps = 47/282 (16%)

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT--------------HI 168
           +   + ++L DLI +    +  L +E  S  + S   +   +L                +
Sbjct: 78  LTPSQVQNLEDLIDARIMDRGTLVLEIFSRRVRSKTAKLQVELATLTYQLPRLYGKGREM 137

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG-------YK 221
                        E       + +   I  +K ++     Q +     R          +
Sbjct: 138 SRLGGGVGTRGPGEQETEIKRRAIKRRIQQIKEELEEIKRQRREQRKRRERYGSDLKVVR 197

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280
           + ++G++N GKSSL   L  +DV +  D+P  T D  T   L      +  +DT G    
Sbjct: 198 VALVGYTNVGKSSLMKVLTGRDV-LSADMPFATLDTTTSARLLFPDLKILFTDTVGFIRK 256

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTK 328
                 E  K T  EV+ AD+IL + +I+    I   K                I++  K
Sbjct: 257 LPPELIESFKATLEEVQEADIILHVVDISDSSWIEKVKVVQQVLADLSADEKPVIYVFNK 316

Query: 329 SDLYSTYTEEY------------DHLISSFTGEGLEELINKI 358
           +D      E+               ++S+  G G+ EL++ I
Sbjct: 317 ADKLVKEEEQLHELRQQFLMDAPAVIVSAQKGWGIRELLDTI 358


>gi|269978124|ref|ZP_06185074.1| GTP-binding protein HflX [Mobiluncus mulieris 28-1]
 gi|306818496|ref|ZP_07452219.1| GTP-binding protein [Mobiluncus mulieris ATCC 35239]
 gi|307700778|ref|ZP_07637803.1| GTP-binding protein HflX [Mobiluncus mulieris FB024-16]
 gi|269933633|gb|EEZ90217.1| GTP-binding protein HflX [Mobiluncus mulieris 28-1]
 gi|304648669|gb|EFM45971.1| GTP-binding protein [Mobiluncus mulieris ATCC 35239]
 gi|307613773|gb|EFN93017.1| GTP-binding protein HflX [Mobiluncus mulieris FB024-16]
          Length = 513

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 20/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G++NAGKSSL N LA  DV +   +  T    +       G +  ++DT G     
Sbjct: 264 VAIVGYTNAGKSSLLNRLAGADVLVHDALFATLDPSVRKTHTATGRVYTLADTVGFVRRL 323

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-------------ISFPKNIDFIFIGTK 328
                E  + T  E   ADL+L + +  +                I   ++   + +  K
Sbjct: 324 PTQLVEAFRSTLEETAMADLLLHVVDAANPDPMGEIEAVNATLDTIESIRHTPVVMVINK 383

Query: 329 SDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKL 369
            D  S  T             +S+ +G+G+E L   I S L    +++
Sbjct: 384 VDAASAPTLALLRRLLPEAVEVSARSGQGIERLQEVIASRLPWPQQRV 431


>gi|20808271|ref|NP_623442.1| ferrous ion uptake system protein FeoB ( GTPase)
           [Thermoanaerobacter tengcongensis MB4]
 gi|20516871|gb|AAM25046.1| Ferrous ion uptake system protein FeoB (predicted GTPase)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 680

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 19/170 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + + G+ N+GK+SLFN L       V + PG T +     L  EG   K+ D  G
Sbjct: 10  RKELVVALAGNPNSGKTSLFNELTGS-RQHVGNWPGVTVEKKEGRLKFEGIDFKVVDLPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSD 330
                   E E I R F+  +  D+++ + +  + +            N + +     SD
Sbjct: 69  TYSLGAYTEDEVIARNFIIYDKPDVVINVVDATNLERNLYLTMQLLEMNANLVIALNMSD 128

Query: 331 LYSTYTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKK 368
                  E D             +  +  GEG++EL+  +   +  K ++
Sbjct: 129 EAKAKGIEIDKDKLSQILKVPVVMTVATKGEGVKELLENVLKAVEFKGER 178


>gi|254479659|ref|ZP_05092959.1| ferrous iron transport protein B [Carboxydibrachium pacificum DSM
           12653]
 gi|214034400|gb|EEB75174.1| ferrous iron transport protein B [Carboxydibrachium pacificum DSM
           12653]
          Length = 680

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 19/170 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + + G+ N+GK+SLFN L       V + PG T +     L  EG   K+ D  G
Sbjct: 10  RKELVVALAGNPNSGKTSLFNELTGS-RQHVGNWPGVTVEKKEGRLKFEGIDFKVVDLPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSD 330
                   E E I R F+  +  D+++ + +  + +            N + +     SD
Sbjct: 69  TYSLGAYTEDEVIARNFIIYDKPDVVINVVDATNLERNLYLTMQLLEMNANLVIALNMSD 128

Query: 331 LYSTYTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKK 368
                  E D             +  +  GEG++EL+  +   +  K ++
Sbjct: 129 EAKAKGIEIDKDKLSQILKVPVVMTVATKGEGVKELLENVLKAVEFKGER 178


>gi|299144155|ref|ZP_07037235.1| GTP-binding protein Era [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518640|gb|EFI42379.1| GTP-binding protein Era [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 296

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 76/200 (38%), Gaps = 23/200 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + ++ +++   TTR+ +T     E   V   DT GI+   
Sbjct: 7   VTIIGRPNVGKSTLLNCIVGQKISAISNKAQTTRNKITFIYTDEKMQVIFLDTPGIQMPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPK-NIDFIFIGTKSDL 331
           + +    +K +   +   D+I  + + + K         KE+         + +  K D 
Sbjct: 67  NKLGDYMLKVSESTLSEVDVITYIVDCSKKIGKLDNYIIKELKEKNLKTPIVLLVNKIDE 126

Query: 332 YSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
            +                 +    IS+   +G+E  +  +   +       P  + +   
Sbjct: 127 VAKEELFEIIKMYDDIGIFKEIIPISALKNDGVESYLKTLAKYIPIGPMYYPEDMVTDHP 186

Query: 379 HLYHLSQTVRYLEMASLNEK 398
             + + + +R   +  L+E+
Sbjct: 187 EKFIVGEIIREKALRFLDEE 206


>gi|291302023|ref|YP_003513301.1| GTP-binding proten HflX [Stackebrandtia nassauensis DSM 44728]
 gi|290571243|gb|ADD44208.1| GTP-binding proten HflX [Stackebrandtia nassauensis DSM 44728]
          Length = 466

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 27/206 (13%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK----DVAIVTDIPGTTR 255
              + +     +      +   + I G++NAGKSSL N L       + A+   +  TTR
Sbjct: 225 IAKLRTVRDTKRSSRRRHSVPSVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTTR 284

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              T     +G    +SDT G          +  + T  EV +ADLI+ + + +     +
Sbjct: 285 RARTG----DGRDYTLSDTVGFVSHLPHQLVDAFRSTLEEVADADLIVHVIDGSHPDPGA 340

Query: 316 FPK------------NIDFIFIGTKSD------LYSTYTEEYD-HLISSFTGEGLEELIN 356
             +             +  + +  K D      L +  T+  D   +S+ TGEG+++L +
Sbjct: 341 QVRAVREVLNDVGADAVPEVLVVNKIDRAGSEALLTLRTDWPDAVFVSAHTGEGVDKLRD 400

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYH 382
            I+  L      L   +P  +  L  
Sbjct: 401 VIEERLPRPAVPLLVCVPYVRGDLAA 426


>gi|227495954|ref|ZP_03926265.1| GTP-binding protein Era [Actinomyces urogenitalis DSM 15434]
 gi|226834508|gb|EEH66891.1| GTP-binding protein Era [Actinomyces urogenitalis DSM 15434]
          Length = 351

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+   ++G  NAGKS+L NAL    VAI +  P TTR  +   +  E   + + D
Sbjct: 48  EDFRAGF-ACLVGRPNAGKSTLTNALVGSKVAITSGRPQTTRHNVRGVVHREDAQLVLVD 106

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           T G+     ++ K         + + D++      N K
Sbjct: 107 TPGLHRPKTLLGKRLNDLVRETLTDVDVVAFCIPANEK 144


>gi|126650465|ref|ZP_01722688.1| GTP-binding protein [Bacillus sp. B14905]
 gi|126592621|gb|EAZ86620.1| GTP-binding protein [Bacillus sp. B14905]
          Length = 428

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 98/252 (38%), Gaps = 28/252 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALA-- 240
               +++ + I  +K D+     Q +     R       + I+G++NAGKS++ N L   
Sbjct: 169 ELDRRKIEDQIAKIKKDLEQVKDQRETQRKQRRKNALPVVSIVGYTNAGKSTIMNQLLAE 228

Query: 241 --KKDVAIVT--DIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLE 295
             +++   V   D+   T +     ++L       ++DT G          +  + T  E
Sbjct: 229 IGQEEHKQVFEKDMLFATLETSVRQIELPDKKTFLLTDTVGFVSKLPHHLVKAFRSTLEE 288

Query: 296 VENADLILLLKEINSKKE------------ISFPKNIDFIFIGTKSDLYST---YTEEYD 340
             +ADL+L + ++++ +                 + I  I++  K+DL           +
Sbjct: 289 ARDADLLLHVVDVSNSEHGFMMDVTNETLKAVGVEGIPTIYVYNKADLAQVPYPVVSGDN 348

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
             +S+  G GLEELI  ++  + + +      IP  + ++         +   +  E   
Sbjct: 349 IWVSAKQGVGLEELIQLVRQHIFSDYVTCEMLIPYDQGNIVSYLNEHASVSNTAYEEGGT 408

Query: 401 GLDIIAENLRLA 412
              +++  ++ A
Sbjct: 409 ---LLSLEVKEA 417


>gi|16752564|ref|NP_444826.1| GTP-binding protein HflX, putative [Chlamydophila pneumoniae AR39]
 gi|7189200|gb|AAF38134.1| GTP-binding protein HflX, putative [Chlamydophila pneumoniae AR39]
          Length = 472

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 78/222 (35%), Gaps = 25/222 (11%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII--RNGY-KIVILGHSNAGKSSLF 236
           E E       + V   I  L   + + I Q      +  R G     ++G++N+GKS+L 
Sbjct: 187 EGEKQIELDRRMVRERIHKLSAQLKAVIKQRAERRKVKSRRGIPTFALIGYTNSGKSTLL 246

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
           N L   D   V D    T D  T    L  G  V ++DT G             K T   
Sbjct: 247 NLLTAAD-TYVEDKLFATLDPKTRKCVLPGGRHVLLTDTVGFIRKLPHTLVAAFKSTLEA 305

Query: 296 VENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYST--------Y 335
             + D++L + + +    +               +    I +  K D             
Sbjct: 306 AFHEDVLLHVVDASHPLALEHVQTTYDLFQELKIEKPRIITVLNKVDRLPQGSIPMKLRL 365

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                 LIS+ TGEG++ L++ +  I+  K   +  + P  +
Sbjct: 366 LSPLPVLISAKTGEGIQNLLSLMTEIIQEKSLHVTLNFPYTE 407


>gi|15606930|ref|NP_214311.1| GTP-binding protein HflX [Aquifex aeolicus VF5]
 gi|2984170|gb|AAC07703.1| GTP-binding protein HflX [Aquifex aeolicus VF5]
          Length = 370

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVK 270
            GE I    ++ I+G++NAGKS+L NAL KKD   V ++   T D  T   +    + + 
Sbjct: 192 KGERI---VRVAIVGYTNAGKSTLMNALTKKD-TYVANMLFATLDTKTSARVIYPDFKLL 247

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PK 318
            +DT G          E  K T  EV+ AD+IL + +++ +  + +             +
Sbjct: 248 FTDTVGFIRKLPPELIESFKATLEEVQEADIILHVVDVSDEGWLDYVSTVNEVLKELGAE 307

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLI------------SSFTGEGLEELINKIKSIL 362
               I+   K+D       E +HL             S+    GL +L++KI  + 
Sbjct: 308 EKPIIYALNKADKLVETENEMNHLPHPAFIEGDAVLISAEKRWGLGKLLDKIVEVA 363


>gi|330507073|ref|YP_004383501.1| GTP-binding protein HflX [Methanosaeta concilii GP-6]
 gi|328927881|gb|AEB67683.1| GTP-binding protein HflX [Methanosaeta concilii GP-6]
          Length = 415

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 25/207 (12%)

Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
            E       +  +  I     ++ +     +          I + G++NAGKS+L N L 
Sbjct: 149 YEQSMYHDIRGRMAKIRGELKEVEAMGEGRRKRRRELGFDLIALAGYTNAGKSTLLNTLT 208

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
              V    D P TT    T  L++ G    ++DT G  +       +  + T  E+  AD
Sbjct: 209 GS-VVNAQDQPFTTLSPTTRALEINGRRTMLTDTVGFIDDLPHFLIKAFQSTLSEIAQAD 267

Query: 301 LILLLKEINSKKEISFPK-------------NIDFIFIGTKSDLYSTYTEE--------- 338
           L+LL+ +++   E+   K                 I +  K D    +            
Sbjct: 268 LVLLVADLSDPLELLRRKLVASHKALWDCQVTAPMITVLNKMDRLDEFDARMRFDQIKDL 327

Query: 339 --YDHLISSFTGEGLEELINKIKSILS 363
                ++S+ + +G E L   I   L 
Sbjct: 328 APNPVMVSAHSSQGQESLKECIYQHLP 354


>gi|158320029|ref|YP_001512536.1| small GTP-binding protein [Alkaliphilus oremlandii OhILAs]
 gi|158140228|gb|ABW18540.1| small GTP-binding protein [Alkaliphilus oremlandii OhILAs]
          Length = 411

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 10/152 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           N   IV  G  NAGKS+L N +  +D+++V+ I GTT D ++  ++L     V   DT G
Sbjct: 8   NRKHIVFYGKRNAGKSTLMNRIVGQDISVVSSIKGTTTDPVSKAVELIPFGPVLFIDTGG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTK 328
           + +  D+ E   +++T   +E AD  + +  I  + E  +         +NI +I +  K
Sbjct: 68  VDDGGDLGELR-VEKTENTLEKADFAVYVISIEDRDEGFYLEYREKFKERNIPYITVINK 126

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
            D  S    +          +    +   IK 
Sbjct: 127 IDTVSEEKLKQIRYDLVINKKWKNTVFTTIKD 158


>gi|16130491|ref|NP_417061.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89109372|ref|AP_003152.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str.
           K-12 substr. W3110]
 gi|157162045|ref|YP_001459363.1| GTP-binding protein Era [Escherichia coli HS]
 gi|170019151|ref|YP_001724105.1| GTP-binding protein Era [Escherichia coli ATCC 8739]
 gi|170082175|ref|YP_001731495.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188492753|ref|ZP_03000023.1| GTP-binding protein Era [Escherichia coli 53638]
 gi|194437653|ref|ZP_03069749.1| GTP-binding protein Era [Escherichia coli 101-1]
 gi|238901731|ref|YP_002927527.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           BW2952]
 gi|253772535|ref|YP_003035366.1| GTP-binding protein Era [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162541|ref|YP_003045649.1| GTP-binding protein Era [Escherichia coli B str. REL606]
 gi|256021748|ref|ZP_05435613.1| GTP-binding protein Era [Escherichia sp. 4_1_40B]
 gi|293415835|ref|ZP_06658478.1| GTP-binding protein Era [Escherichia coli B185]
 gi|297516305|ref|ZP_06934691.1| GTP-binding protein Era [Escherichia coli OP50]
 gi|300904250|ref|ZP_07122109.1| GTP-binding protein Era [Escherichia coli MS 84-1]
 gi|300920734|ref|ZP_07137140.1| GTP-binding protein Era [Escherichia coli MS 115-1]
 gi|300927692|ref|ZP_07143260.1| GTP-binding protein Era [Escherichia coli MS 187-1]
 gi|300951716|ref|ZP_07165535.1| GTP-binding protein Era [Escherichia coli MS 116-1]
 gi|300958793|ref|ZP_07170905.1| GTP-binding protein Era [Escherichia coli MS 175-1]
 gi|301022060|ref|ZP_07185987.1| GTP-binding protein Era [Escherichia coli MS 196-1]
 gi|301302933|ref|ZP_07209061.1| GTP-binding protein Era [Escherichia coli MS 124-1]
 gi|301648330|ref|ZP_07248070.1| GTP-binding protein Era [Escherichia coli MS 146-1]
 gi|307139202|ref|ZP_07498558.1| GTP-binding protein Era [Escherichia coli H736]
 gi|312973188|ref|ZP_07787360.1| GTP-binding protein Era [Escherichia coli 1827-70]
 gi|331643190|ref|ZP_08344325.1| GTP-binding protein Era [Escherichia coli H736]
 gi|331654028|ref|ZP_08355029.1| GTP-binding protein Era [Escherichia coli M718]
 gi|462020|sp|P06616|ERA_ECOLI RecName: Full=GTPase Era; Short=ERA; AltName: Full=GTP-binding
           protein Era
 gi|189037270|sp|A8A376|ERA_ECOHS RecName: Full=GTPase Era
 gi|189037272|sp|B1IVR1|ERA_ECOLC RecName: Full=GTPase Era
 gi|226741210|sp|B1XB40|ERA_ECODH RecName: Full=GTPase Era
 gi|259645943|sp|C4ZYI9|ERA_ECOBW RecName: Full=GTPase Era
 gi|5822055|pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
 gi|5822056|pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
 gi|67464189|pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
           Domain Of The 16s Rrna Within The Thermus Thermophilus
           30s Subunit.
 gi|256599905|pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
 gi|256599906|pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
 gi|416295|gb|AAA03242.1| era [Escherichia coli]
 gi|987641|dbj|BAA10913.1| GTP binding protein [Escherichia coli K-12]
 gi|998396|gb|AAB34156.1| GTPase, Era [Escherichia coli, Peptide Mutant, 301 aa]
 gi|1033155|gb|AAA79828.1| GTP-binding protein [Escherichia coli str. K-12 substr. MG1655]
 gi|1788919|gb|AAC75619.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str.
           K-12 substr. MG1655]
 gi|85675457|dbj|BAE76742.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str.
           K12 substr. W3110]
 gi|157067725|gb|ABV06980.1| GTP-binding protein Era [Escherichia coli HS]
 gi|169754079|gb|ACA76778.1| GTP-binding protein Era [Escherichia coli ATCC 8739]
 gi|169890010|gb|ACB03717.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188487952|gb|EDU63055.1| GTP-binding protein Era [Escherichia coli 53638]
 gi|194423459|gb|EDX39450.1| GTP-binding protein Era [Escherichia coli 101-1]
 gi|238861749|gb|ACR63747.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           BW2952]
 gi|242378167|emb|CAQ32941.1| GTP-binding protein [Escherichia coli BL21(DE3)]
 gi|253323579|gb|ACT28181.1| GTP-binding protein Era [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974442|gb|ACT40113.1| GTP-binding protein Era [Escherichia coli B str. REL606]
 gi|253978609|gb|ACT44279.1| GTP-binding protein Era [Escherichia coli BL21(DE3)]
 gi|260448354|gb|ACX38776.1| GTP-binding protein Era [Escherichia coli DH1]
 gi|291433483|gb|EFF06462.1| GTP-binding protein Era [Escherichia coli B185]
 gi|299881365|gb|EFI89576.1| GTP-binding protein Era [Escherichia coli MS 196-1]
 gi|300314541|gb|EFJ64325.1| GTP-binding protein Era [Escherichia coli MS 175-1]
 gi|300403783|gb|EFJ87321.1| GTP-binding protein Era [Escherichia coli MS 84-1]
 gi|300412305|gb|EFJ95615.1| GTP-binding protein Era [Escherichia coli MS 115-1]
 gi|300449000|gb|EFK12620.1| GTP-binding protein Era [Escherichia coli MS 116-1]
 gi|300464245|gb|EFK27738.1| GTP-binding protein Era [Escherichia coli MS 187-1]
 gi|300841868|gb|EFK69628.1| GTP-binding protein Era [Escherichia coli MS 124-1]
 gi|301073606|gb|EFK88412.1| GTP-binding protein Era [Escherichia coli MS 146-1]
 gi|309702952|emb|CBJ02283.1| GTP-binding protein [Escherichia coli ETEC H10407]
 gi|310331783|gb|EFP99018.1| GTP-binding protein Era [Escherichia coli 1827-70]
 gi|315137190|dbj|BAJ44349.1| GTP-binding protein Era [Escherichia coli DH1]
 gi|315256594|gb|EFU36562.1| GTP-binding protein Era [Escherichia coli MS 85-1]
 gi|315615828|gb|EFU96460.1| GTP-binding protein Era [Escherichia coli 3431]
 gi|323936306|gb|EGB32597.1| GTP-binding protein Era [Escherichia coli E1520]
 gi|323941171|gb|EGB37356.1| GTP-binding protein Era [Escherichia coli E482]
 gi|323961181|gb|EGB56794.1| GTP-binding protein Era [Escherichia coli H489]
 gi|323971108|gb|EGB66355.1| GTP-binding protein Era [Escherichia coli TA007]
 gi|331039988|gb|EGI12208.1| GTP-binding protein Era [Escherichia coli H736]
 gi|331048877|gb|EGI20953.1| GTP-binding protein Era [Escherichia coli M718]
 gi|332344441|gb|AEE57775.1| GTP-binding protein [Escherichia coli UMNK88]
          Length = 301

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|26248931|ref|NP_754971.1| GTP-binding protein Era [Escherichia coli CFT073]
 gi|74313128|ref|YP_311547.1| GTP-binding protein Era [Shigella sonnei Ss046]
 gi|82545018|ref|YP_408965.1| GTP-binding protein Era [Shigella boydii Sb227]
 gi|91211892|ref|YP_541878.1| GTP-binding protein Era [Escherichia coli UTI89]
 gi|110642728|ref|YP_670458.1| GTP-binding protein Era [Escherichia coli 536]
 gi|117624787|ref|YP_853700.1| GTP-binding protein Era [Escherichia coli APEC O1]
 gi|157157884|ref|YP_001463889.1| GTP-binding protein Era [Escherichia coli E24377A]
 gi|170681506|ref|YP_001744755.1| GTP-binding protein Era [Escherichia coli SMS-3-5]
 gi|187732790|ref|YP_001881345.1| GTP-binding protein Era [Shigella boydii CDC 3083-94]
 gi|191167969|ref|ZP_03029771.1| GTP-binding protein Era [Escherichia coli B7A]
 gi|191174026|ref|ZP_03035543.1| GTP-binding protein Era [Escherichia coli F11]
 gi|193064069|ref|ZP_03045154.1| GTP-binding protein Era [Escherichia coli E22]
 gi|193068335|ref|ZP_03049298.1| GTP-binding protein Era [Escherichia coli E110019]
 gi|194429262|ref|ZP_03061789.1| GTP-binding protein Era [Escherichia coli B171]
 gi|194432158|ref|ZP_03064447.1| GTP-binding protein Era [Shigella dysenteriae 1012]
 gi|209920045|ref|YP_002294129.1| GTP-binding protein Era [Escherichia coli SE11]
 gi|215487910|ref|YP_002330341.1| GTP-binding protein Era [Escherichia coli O127:H6 str. E2348/69]
 gi|218555147|ref|YP_002388060.1| GTP-binding protein Era [Escherichia coli IAI1]
 gi|218559487|ref|YP_002392400.1| GTP-binding protein Era [Escherichia coli S88]
 gi|218690682|ref|YP_002398894.1| GTP-binding protein Era [Escherichia coli ED1a]
 gi|218696194|ref|YP_002403861.1| GTP-binding protein Era [Escherichia coli 55989]
 gi|218701080|ref|YP_002408709.1| GTP-binding protein Era [Escherichia coli IAI39]
 gi|218706070|ref|YP_002413589.1| GTP-binding protein Era [Escherichia coli UMN026]
 gi|227887602|ref|ZP_04005407.1| GTP-binding protein Era [Escherichia coli 83972]
 gi|237705076|ref|ZP_04535557.1| GTP-binding protein era [Escherichia sp. 3_2_53FAA]
 gi|256017285|ref|ZP_05431150.1| GTP-binding protein Era [Shigella sp. D9]
 gi|260845251|ref|YP_003223029.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           O103:H2 str. 12009]
 gi|260856660|ref|YP_003230551.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           O26:H11 str. 11368]
 gi|260869253|ref|YP_003235655.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           O111:H- str. 11128]
 gi|293406008|ref|ZP_06650000.1| era [Escherichia coli FVEC1412]
 gi|293410982|ref|ZP_06654558.1| GTP-binding protein Era [Escherichia coli B354]
 gi|293446920|ref|ZP_06663342.1| GTP-binding protein Era [Escherichia coli B088]
 gi|298381808|ref|ZP_06991407.1| GTP-binding protein Era [Escherichia coli FVEC1302]
 gi|300817657|ref|ZP_07097872.1| GTP-binding protein Era [Escherichia coli MS 107-1]
 gi|300820755|ref|ZP_07100905.1| GTP-binding protein Era [Escherichia coli MS 119-7]
 gi|300898319|ref|ZP_07116667.1| GTP-binding protein Era [Escherichia coli MS 198-1]
 gi|300927057|ref|ZP_07142809.1| GTP-binding protein Era [Escherichia coli MS 182-1]
 gi|300935699|ref|ZP_07150669.1| GTP-binding protein Era [Escherichia coli MS 21-1]
 gi|300974162|ref|ZP_07172480.1| GTP-binding protein Era [Escherichia coli MS 200-1]
 gi|300982270|ref|ZP_07175981.1| GTP-binding protein Era [Escherichia coli MS 45-1]
 gi|301024853|ref|ZP_07188490.1| GTP-binding protein Era [Escherichia coli MS 69-1]
 gi|301047205|ref|ZP_07194297.1| GTP-binding protein Era [Escherichia coli MS 185-1]
 gi|301330332|ref|ZP_07222979.1| GTP-binding protein Era [Escherichia coli MS 78-1]
 gi|306814370|ref|ZP_07448532.1| GTP-binding protein Era [Escherichia coli NC101]
 gi|307313863|ref|ZP_07593479.1| GTP-binding protein Era [Escherichia coli W]
 gi|309794380|ref|ZP_07688803.1| GTP-binding protein Era [Escherichia coli MS 145-7]
 gi|312965482|ref|ZP_07779714.1| GTP-binding protein Era [Escherichia coli 2362-75]
 gi|331658710|ref|ZP_08359654.1| GTP-binding protein Era [Escherichia coli TA206]
 gi|331664134|ref|ZP_08365044.1| GTP-binding protein Era [Escherichia coli TA143]
 gi|331669316|ref|ZP_08370164.1| GTP-binding protein Era [Escherichia coli TA271]
 gi|331674015|ref|ZP_08374778.1| GTP-binding protein Era [Escherichia coli TA280]
 gi|331678562|ref|ZP_08379237.1| GTP-binding protein Era [Escherichia coli H591]
 gi|331684216|ref|ZP_08384812.1| GTP-binding protein Era [Escherichia coli H299]
 gi|332278276|ref|ZP_08390689.1| GTP-binding protein era [Shigella sp. D9]
 gi|34222489|sp|Q8FF17|ERA_ECOL6 RecName: Full=GTPase Era
 gi|122422870|sp|Q1R8G7|ERA_ECOUT RecName: Full=GTPase Era
 gi|123048970|sp|Q0TES2|ERA_ECOL5 RecName: Full=GTPase Era
 gi|123558970|sp|Q31XS1|ERA_SHIBS RecName: Full=GTPase Era
 gi|123616464|sp|Q3YYV0|ERA_SHISS RecName: Full=GTPase Era
 gi|189037269|sp|A7ZQ10|ERA_ECO24 RecName: Full=GTPase Era
 gi|189037271|sp|A1AE96|ERA_ECOK1 RecName: Full=GTPase Era
 gi|226741206|sp|B7MIQ1|ERA_ECO45 RecName: Full=GTPase Era
 gi|226741208|sp|B7NRL9|ERA_ECO7I RecName: Full=GTPase Era
 gi|226741209|sp|B7M8H9|ERA_ECO8A RecName: Full=GTPase Era
 gi|226741211|sp|B7N6F4|ERA_ECOLU RecName: Full=GTPase Era
 gi|226741212|sp|B6I5E0|ERA_ECOSE RecName: Full=GTPase Era
 gi|226741213|sp|B1LP79|ERA_ECOSM RecName: Full=GTPase Era
 gi|226741236|sp|B2TXX9|ERA_SHIB3 RecName: Full=GTPase Era
 gi|254783654|sp|B7UH06|ERA_ECO27 RecName: Full=GTPase Era
 gi|254783655|sp|B7LDF9|ERA_ECO55 RecName: Full=GTPase Era
 gi|254783656|sp|B7MYJ7|ERA_ECO81 RecName: Full=GTPase Era
 gi|26109337|gb|AAN81539.1|AE016764_221 GTP-binding protein era [Escherichia coli CFT073]
 gi|73856605|gb|AAZ89312.1| GTP-binding protein [Shigella sonnei Ss046]
 gi|81246429|gb|ABB67137.1| GTP-binding protein [Shigella boydii Sb227]
 gi|91073466|gb|ABE08347.1| GTP-binding protein era [Escherichia coli UTI89]
 gi|110344320|gb|ABG70557.1| GTP-binding protein Era [Escherichia coli 536]
 gi|115513911|gb|ABJ01986.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli APEC
           O1]
 gi|157079914|gb|ABV19622.1| GTP-binding protein Era [Escherichia coli E24377A]
 gi|170519224|gb|ACB17402.1| GTP-binding protein Era [Escherichia coli SMS-3-5]
 gi|187429782|gb|ACD09056.1| GTP-binding protein Era [Shigella boydii CDC 3083-94]
 gi|190901976|gb|EDV61723.1| GTP-binding protein Era [Escherichia coli B7A]
 gi|190905717|gb|EDV65339.1| GTP-binding protein Era [Escherichia coli F11]
 gi|192929304|gb|EDV82913.1| GTP-binding protein Era [Escherichia coli E22]
 gi|192958287|gb|EDV88727.1| GTP-binding protein Era [Escherichia coli E110019]
 gi|194412670|gb|EDX28965.1| GTP-binding protein Era [Escherichia coli B171]
 gi|194419687|gb|EDX35767.1| GTP-binding protein Era [Shigella dysenteriae 1012]
 gi|209913304|dbj|BAG78378.1| GTP-binding protein [Escherichia coli SE11]
 gi|215265982|emb|CAS10391.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218352926|emb|CAU98725.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           55989]
 gi|218361915|emb|CAQ99515.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           IAI1]
 gi|218366256|emb|CAR04003.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli S88]
 gi|218371066|emb|CAR18893.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           IAI39]
 gi|218428246|emb|CAR09163.2| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           ED1a]
 gi|218433167|emb|CAR14063.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           UMN026]
 gi|222034271|emb|CAP77012.1| GTP-binding protein era [Escherichia coli LF82]
 gi|226901442|gb|EEH87701.1| GTP-binding protein era [Escherichia sp. 3_2_53FAA]
 gi|227835952|gb|EEJ46418.1| GTP-binding protein Era [Escherichia coli 83972]
 gi|257755309|dbj|BAI26811.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           O26:H11 str. 11368]
 gi|257760398|dbj|BAI31895.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           O103:H2 str. 12009]
 gi|257765609|dbj|BAI37104.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           O111:H- str. 11128]
 gi|281179615|dbj|BAI55945.1| GTP-binding protein [Escherichia coli SE15]
 gi|284922516|emb|CBG35603.1| GTP-binding protein [Escherichia coli 042]
 gi|291323750|gb|EFE63178.1| GTP-binding protein Era [Escherichia coli B088]
 gi|291428216|gb|EFF01243.1| era [Escherichia coli FVEC1412]
 gi|291471450|gb|EFF13934.1| GTP-binding protein Era [Escherichia coli B354]
 gi|294490299|gb|ADE89055.1| GTP-binding protein Era [Escherichia coli IHE3034]
 gi|298279250|gb|EFI20764.1| GTP-binding protein Era [Escherichia coli FVEC1302]
 gi|300300882|gb|EFJ57267.1| GTP-binding protein Era [Escherichia coli MS 185-1]
 gi|300308901|gb|EFJ63421.1| GTP-binding protein Era [Escherichia coli MS 200-1]
 gi|300357981|gb|EFJ73851.1| GTP-binding protein Era [Escherichia coli MS 198-1]
 gi|300396384|gb|EFJ79922.1| GTP-binding protein Era [Escherichia coli MS 69-1]
 gi|300408824|gb|EFJ92362.1| GTP-binding protein Era [Escherichia coli MS 45-1]
 gi|300416941|gb|EFK00252.1| GTP-binding protein Era [Escherichia coli MS 182-1]
 gi|300459133|gb|EFK22626.1| GTP-binding protein Era [Escherichia coli MS 21-1]
 gi|300526508|gb|EFK47577.1| GTP-binding protein Era [Escherichia coli MS 119-7]
 gi|300529645|gb|EFK50707.1| GTP-binding protein Era [Escherichia coli MS 107-1]
 gi|300843666|gb|EFK71426.1| GTP-binding protein Era [Escherichia coli MS 78-1]
 gi|305851764|gb|EFM52216.1| GTP-binding protein Era [Escherichia coli NC101]
 gi|306906364|gb|EFN36879.1| GTP-binding protein Era [Escherichia coli W]
 gi|307554585|gb|ADN47360.1| GTP-binding protein Era [Escherichia coli ABU 83972]
 gi|307625886|gb|ADN70190.1| GTP-binding protein Era [Escherichia coli UM146]
 gi|308121836|gb|EFO59098.1| GTP-binding protein Era [Escherichia coli MS 145-7]
 gi|312289902|gb|EFR17790.1| GTP-binding protein Era [Escherichia coli 2362-75]
 gi|312947137|gb|ADR27964.1| GTP-binding protein Era [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061885|gb|ADT76212.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli W]
 gi|315288043|gb|EFU47445.1| GTP-binding protein Era [Escherichia coli MS 110-3]
 gi|315292458|gb|EFU51810.1| GTP-binding protein Era [Escherichia coli MS 153-1]
 gi|315300507|gb|EFU59736.1| GTP-binding protein Era [Escherichia coli MS 16-3]
 gi|320176132|gb|EFW51199.1| GTP-binding protein Era [Shigella dysenteriae CDC 74-1112]
 gi|320182109|gb|EFW57013.1| GTP-binding protein Era [Shigella boydii ATCC 9905]
 gi|320186365|gb|EFW61099.1| GTP-binding protein Era [Shigella flexneri CDC 796-83]
 gi|320196402|gb|EFW71026.1| GTP-binding protein Era [Escherichia coli WV_060327]
 gi|320200130|gb|EFW74719.1| GTP-binding protein Era [Escherichia coli EC4100B]
 gi|323156224|gb|EFZ42383.1| GTP-binding protein Era [Escherichia coli EPECa14]
 gi|323159223|gb|EFZ45213.1| GTP-binding protein Era [Escherichia coli E128010]
 gi|323167800|gb|EFZ53495.1| GTP-binding protein Era [Shigella sonnei 53G]
 gi|323173116|gb|EFZ58747.1| GTP-binding protein Era [Escherichia coli LT-68]
 gi|323177304|gb|EFZ62892.1| GTP-binding protein Era [Escherichia coli 1180]
 gi|323184554|gb|EFZ69928.1| GTP-binding protein Era [Escherichia coli 1357]
 gi|323188319|gb|EFZ73611.1| GTP-binding protein Era [Escherichia coli RN587/1]
 gi|323377534|gb|ADX49802.1| GTP-binding protein Era [Escherichia coli KO11]
 gi|323944623|gb|EGB40691.1| GTP-binding protein Era [Escherichia coli H120]
 gi|323949220|gb|EGB45111.1| GTP-binding protein Era [Escherichia coli H252]
 gi|323955802|gb|EGB51560.1| GTP-binding protein Era [Escherichia coli H263]
 gi|324008475|gb|EGB77694.1| GTP-binding protein Era [Escherichia coli MS 57-2]
 gi|324014389|gb|EGB83608.1| GTP-binding protein Era [Escherichia coli MS 60-1]
 gi|324020024|gb|EGB89243.1| GTP-binding protein Era [Escherichia coli MS 117-3]
 gi|324118224|gb|EGC12120.1| GTP-binding protein Era [Escherichia coli E1167]
 gi|331054375|gb|EGI26402.1| GTP-binding protein Era [Escherichia coli TA206]
 gi|331059933|gb|EGI31910.1| GTP-binding protein Era [Escherichia coli TA143]
 gi|331064510|gb|EGI36421.1| GTP-binding protein Era [Escherichia coli TA271]
 gi|331069288|gb|EGI40680.1| GTP-binding protein Era [Escherichia coli TA280]
 gi|331075022|gb|EGI46342.1| GTP-binding protein Era [Escherichia coli H591]
 gi|331079168|gb|EGI50370.1| GTP-binding protein Era [Escherichia coli H299]
 gi|332089225|gb|EGI94332.1| GTP-binding protein Era [Shigella dysenteriae 155-74]
 gi|332092618|gb|EGI97690.1| GTP-binding protein Era [Shigella boydii 3594-74]
 gi|332100628|gb|EGJ03974.1| GTP-binding protein era [Shigella sp. D9]
          Length = 301

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|206970726|ref|ZP_03231678.1| GTP-binding protein [Bacillus cereus AH1134]
 gi|228907561|ref|ZP_04071418.1| hypothetical protein bthur0013_17280 [Bacillus thuringiensis IBL
           200]
 gi|206734362|gb|EDZ51532.1| GTP-binding protein [Bacillus cereus AH1134]
 gi|228852053|gb|EEM96850.1| hypothetical protein bthur0013_17280 [Bacillus thuringiensis IBL
           200]
          Length = 419

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 110/294 (37%), Gaps = 26/294 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           +EEL+  I+S +  ++ K    IP  +  +        ++   S   +   L+I
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNNHAHVLSTSYENEGTKLEI 404


>gi|67464182|pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
           30s Subunit
          Length = 292

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 68  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 128 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQ 187

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 188 RFMASEIIR 196


>gi|259507801|ref|ZP_05750701.1| GTP-binding protein Era [Corynebacterium efficiens YS-314]
 gi|259164594|gb|EEW49148.1| GTP-binding protein Era [Corynebacterium efficiens YS-314]
          Length = 305

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 79/209 (37%), Gaps = 25/209 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  E   + + D
Sbjct: 8   EGFRSGF-VSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGLVHREDAQIIVVD 66

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFI 323
           T G+     ++ +   +       + DLI L      K             +       +
Sbjct: 67  TPGLHRPRTLLGERLNESVKDTYSDVDLIGLTIPATDKIGPGDRWILDAVRTAAPKTPIV 126

Query: 324 FIGTKSDLYS--------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
            I TK D  S                 E     +SS +GE ++ L   I  +L    K  
Sbjct: 127 GIVTKIDKASWDQVAAQLMAVHELLGGESEVVPVSSASGENIDTLAAVIAGLLPEGPKYY 186

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           P    + +     +S+ +R   ++ L ++
Sbjct: 187 PDDHITDEDIETRMSELIREAALSGLKDE 215


>gi|167766321|ref|ZP_02438374.1| hypothetical protein CLOSS21_00825 [Clostridium sp. SS2/1]
 gi|167712040|gb|EDS22619.1| hypothetical protein CLOSS21_00825 [Clostridium sp. SS2/1]
 gi|291558964|emb|CBL37764.1| GTP-binding protein HflX [butyrate-producing bacterium SSC/2]
          Length = 412

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 78/202 (38%), Gaps = 23/202 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGYKI-VILGHSNAGKSSLFNALAKK 242
               + +   I  LK ++   +   + +  +  +N   +  I+G++NAGKS+L N     
Sbjct: 163 EMDRRLIRTRISRLKAELRDVVKHREVQRKQRQKNHLPVVCIVGYTNAGKSTLLNHFTNA 222

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V    D    T D  T  LDL  G  + ++DT G          E  K T  E + +DL
Sbjct: 223 GVYE-EDQLFATLDPTTKSLDLSGGQTILMTDTVGFIRKLPHHLVEAFKSTLEEAKYSDL 281

Query: 302 ILLLKEINSKKEISF------------PKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
           IL + + ++ ++                     I    K DL            E    I
Sbjct: 282 ILHVVDASNPQKEKQMEAVYDTLKQLGANESPIITAFNKIDLLNGDEILKDPNAEAVVRI 341

Query: 344 SSFTGEGLEELINKIKSILSNK 365
           S   GEG ++L+ +I+ IL  +
Sbjct: 342 SGKNGEGTDQLLEQIEKILQKQ 363


>gi|146295993|ref|YP_001179764.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409569|gb|ABP66573.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 519

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 88/248 (35%), Gaps = 21/248 (8%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           I +     R   ++    +L +L  +       +             E       + +  
Sbjct: 273 IFARRARTREGKLQVELAQLLTLLPRLRGTGVLLSRLGGGIGTRGPGETKLEIDRRHIQR 332

Query: 195 DILFLKNDISSHISQ---GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +K ++          +   I      + I+G++NAGKS+L N ++K DV +V D  
Sbjct: 333 RIEEIKKELEKVKKSREVQRKSRIENQVPVVSIIGYTNAGKSTLMNRISKADV-LVEDKL 391

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
             T D  T  +  +G    ++DT G          E    T  EV+ ++LIL + +I+  
Sbjct: 392 FATLDTTTRRVYHKGKEFLLTDTVGFIRNLPHHLVEAFSSTLEEVKYSNLILNVVDISDP 451

Query: 312 KEISFPK------------NIDFIFIGTKSDLYSTYT----EEYDHLISSF-TGEGLEEL 354
                 K            NI  I +  K D     T    +   H+      G G++ L
Sbjct: 452 YYYDHIKVSENLLKHLGAENIPLIRVYNKIDKVDLSTVDVFDNVPHVFICAQDGRGIDNL 511

Query: 355 INKIKSIL 362
           ++ I   +
Sbjct: 512 LDMIVERI 519


>gi|283768752|ref|ZP_06341663.1| GTP-binding protein HflX [Bulleidia extructa W1219]
 gi|283104538|gb|EFC05911.1| GTP-binding protein HflX [Bulleidia extructa W1219]
          Length = 412

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 95/233 (40%), Gaps = 26/233 (11%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDV-- 244
           ++       L+ ++     Q +  E  R      ++ ++G++NAGKSSL NA+       
Sbjct: 160 RKYARRKHVLQEELKLVEKQRQQDEKRRAKTLYPRVGLVGYTNAGKSSLLNAILAYTRQN 219

Query: 245 ---AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
               +V D    T D     ++ +G+   + DT G          +    T    + AD+
Sbjct: 220 GQPVMVRDRVFETLDTAVRLVEYKGFAFYLYDTVGFVSNLPKTLIDAFFSTLESAKQADV 279

Query: 302 ILLLKEINSKKEISFPKNIDFI--------------FIGTKSDLYSTYTEEYDHLISSFT 347
           ++ + + +    +SF K                    + TK DL S++  E    +SS+T
Sbjct: 280 LIHVVDGSDP--LSFEKQEATKSVLVKIGAHPKQSLLVHTKKDLVSSF--EDGLWVSSYT 335

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
            EG+ EL++++  +L  K  +    +P  K  L+    ++ +L++    E   
Sbjct: 336 QEGIGELLDQLIGLLFPKEVQFTCLLPYDKMALFDRLSSLAHLQIVGQEETGL 388


>gi|228984964|ref|ZP_04145133.1| hypothetical protein bthur0001_16670 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229155447|ref|ZP_04283556.1| hypothetical protein bcere0010_16400 [Bacillus cereus ATCC 4342]
 gi|228628008|gb|EEK84726.1| hypothetical protein bcere0010_16400 [Bacillus cereus ATCC 4342]
 gi|228774787|gb|EEM23184.1| hypothetical protein bthur0001_16670 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|324325901|gb|ADY21161.1| GTP-binding protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 419

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 111/294 (37%), Gaps = 26/294 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           ++EL+  I+S +  ++ K    IP  +  +     T  ++   S   +   L++
Sbjct: 351 IKELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNTHAHVLSTSYENEGTKLEV 404


>gi|24113908|ref|NP_708418.1| GTP-binding protein Era [Shigella flexneri 2a str. 301]
 gi|30063968|ref|NP_838139.1| GTP-binding protein Era [Shigella flexneri 2a str. 2457T]
 gi|81724270|sp|Q83QI5|ERA_SHIFL RecName: Full=GTPase Era
 gi|24053009|gb|AAN44125.1| GTP-binding protein [Shigella flexneri 2a str. 301]
 gi|30042224|gb|AAP17949.1| GTP-binding protein [Shigella flexneri 2a str. 2457T]
 gi|281601979|gb|ADA74963.1| era-like GTP-binding protein [Shigella flexneri 2002017]
 gi|313648244|gb|EFS12688.1| GTP-binding protein Era [Shigella flexneri 2a str. 2457T]
 gi|332753975|gb|EGJ84349.1| GTP-binding protein Era [Shigella flexneri 4343-70]
 gi|332755807|gb|EGJ86165.1| GTP-binding protein Era [Shigella flexneri 2747-71]
 gi|332761959|gb|EGJ92232.1| GTP-binding protein Era [Shigella flexneri K-671]
 gi|332766567|gb|EGJ96772.1| GTP-binding protein Era [Shigella flexneri 2930-71]
 gi|333000823|gb|EGK20395.1| GTP-binding protein Era [Shigella flexneri K-218]
 gi|333016830|gb|EGK36156.1| GTP-binding protein Era [Shigella flexneri K-304]
          Length = 301

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|331648312|ref|ZP_08349401.1| GTP-binding protein Era [Escherichia coli M605]
 gi|330912335|gb|EGH40845.1| GTP-binding protein Era [Escherichia coli AA86]
 gi|331042861|gb|EGI15002.1| GTP-binding protein Era [Escherichia coli M605]
          Length = 301

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEAPHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|145356544|ref|XP_001422488.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582731|gb|ABP00805.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 351

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 8/141 (5%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETD 281
            I+G  NAGKS+L N L    ++IVT  P TTR  +   L  E   + + DT G+  E  
Sbjct: 54  AIVGRPNAGKSTLMNDLVGTKLSIVTYKPQTTRHRILGILSDENSQMVLLDTPGVMVEEF 113

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSDLYST 334
           + ++   +K     + NAD++  + +       ++        K +    I  K D+   
Sbjct: 114 NKLDGMMLKSVRNSMANADVLFYIVDAARDPYGAWEGLAPKKGKRVPTALILNKCDMVGD 173

Query: 335 YTEEYDHLISSFTGEGLEELI 355
                + +      E ++E++
Sbjct: 174 RERIMELIEYFQAQEAIDEVL 194


>gi|33241830|ref|NP_876771.1| GTP binding protein hflX [Chlamydophila pneumoniae TW-183]
 gi|33236339|gb|AAP98428.1| GTP binding protein hflX [Chlamydophila pneumoniae TW-183]
          Length = 472

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 78/222 (35%), Gaps = 25/222 (11%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII--RNGY-KIVILGHSNAGKSSLF 236
           E E       + V   I  L   + + I Q      +  R G     ++G++N+GKS+L 
Sbjct: 187 EGEKQIELDRRMVRERIHKLSAQLKAVIKQRAERRKVKSRRGIPTFALIGYTNSGKSTLL 246

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
           N L   D   V D    T D  T    L  G  V ++DT G             K T   
Sbjct: 247 NLLTAAD-TYVEDKLFATLDPKTRKCVLPGGRHVLLTDTVGFIRKLPHTLVAAFKSTLEA 305

Query: 296 VENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYST--------Y 335
             + D++L + + +    +               +    I +  K D             
Sbjct: 306 AFHEDVLLHVVDASHPLALEHVQTTYDLFQELKIEKPRIITVLNKVDRLPQGSIPMKLRL 365

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                 LIS+ TGEG++ L++ +  I+  K   +  + P  +
Sbjct: 366 LSPLPVLISAKTGEGIQNLLSLMTEIIQEKSLHVTLNFPYTE 407


>gi|295111471|emb|CBL28221.1| GTPase of unknown function. [Synergistetes bacterium SGP1]
          Length = 81

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 30/54 (55%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
            I+G  N GKSSLFN L  +  +IV D PG TRD +  + +  G    + DT G
Sbjct: 5   AIIGRPNVGKSSLFNRLIGRRESIVDDAPGVTRDRIYGEAEWRGRSFYVIDTGG 58


>gi|262369205|ref|ZP_06062533.1| GTP-binding protein HflX [Acinetobacter johnsonii SH046]
 gi|262315273|gb|EEY96312.1| GTP-binding protein HflX [Acinetobacter johnsonii SH046]
          Length = 443

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 24/199 (12%)

Query: 198 FLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            LK+ +         G   R       + ++G++NAGKS+LFN LAK DV    D    T
Sbjct: 174 QLKDKLEKVRQTRIQGRAARQKAAIPTVSLVGYTNAGKSTLFNTLAKSDV-YAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L+ +G   + ++DT G          E  K T  E   A L+L + + +S   
Sbjct: 233 LDPTLRRLEWDGIGPLVLADTVGFVRNLAHALVESFKATLEETLEASLLLHVIDSSSPDH 292

Query: 314 ISFPK-----------NIDFIFIGTKSD--------LYSTYTEEYDHLISSFTGEGLEEL 354
           +   +           +I  + +  K D        +Y+         +S+ TGEG + L
Sbjct: 293 MEQIEAVEKVLKEIGADIPILRVYNKIDQSGEQAKIIYAEPNVPERVYVSAHTGEGFDLL 352

Query: 355 INKIKSILSNKFKKLPFSI 373
              ++  L  + +     +
Sbjct: 353 RQAVQECLMGQIQNFDVLL 371


>gi|228900450|ref|ZP_04064677.1| hypothetical protein bthur0014_16570 [Bacillus thuringiensis IBL
           4222]
 gi|228964859|ref|ZP_04125964.1| hypothetical protein bthur0004_17030 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228794797|gb|EEM42298.1| hypothetical protein bthur0004_17030 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228859190|gb|EEN03623.1| hypothetical protein bthur0014_16570 [Bacillus thuringiensis IBL
           4222]
          Length = 419

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 110/294 (37%), Gaps = 26/294 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANSNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           +EEL+  I+S +  ++ K    IP  +  +        ++   S   +   L+I
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNNHAHVLSTSYENEGTKLEI 404


>gi|163782126|ref|ZP_02177125.1| GTP-binding protein HflX [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882658|gb|EDP76163.1| GTP-binding protein HflX [Hydrogenivirga sp. 128-5-R1-1]
          Length = 379

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 27/197 (13%)

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
           +  +E L ++  ++        +   GE I    K+ ++G++NAGKS+L   L  ++   
Sbjct: 167 YQVREELEEVKKMRRHQRKRRERSDSGESI---LKVALVGYTNAGKSTLLRVLTGRESFS 223

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
              +  T     +         V  +DT G  +       E  K T  EV  ADLIL + 
Sbjct: 224 ADMLFATLDTKTSSRFLSSDLKVLFTDTVGFIKKLPTELIESFKATLEEVTEADLILHVV 283

Query: 307 EINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEEYDHLI----------- 343
           +++  + + +                  I++  K+D      EE  HL            
Sbjct: 284 DVSDDRWLDYIHTVRDILKELSADGKPVIYVLNKADRIVDSEEEMRHLPHGAFVEGASVV 343

Query: 344 -SSFTGEGLEELINKIK 359
            S+    G++ELINKI+
Sbjct: 344 VSAERRWGIDELINKIR 360


>gi|90419640|ref|ZP_01227550.1| GTP-binding protein HflX [Aurantimonas manganoxydans SI85-9A1]
 gi|90336577|gb|EAS50318.1| GTP-binding protein HflX [Aurantimonas manganoxydans SI85-9A1]
          Length = 406

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 79/219 (36%), Gaps = 31/219 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDV 244
             +++   I  L+ D+       +L    R       + ++G++NAGKS+LFN L   +V
Sbjct: 134 DRRQLQEKIKRLEKDLEQVRRTRQLHRAQRKKAPHPVVALVGYTNAGKSTLFNRLTGAEV 193

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T    L       G  +  SDT G             + T  EV  AD++L 
Sbjct: 194 MAKDLLFATLDPTLRRTTLPHGTEILFSDTVGFVSDLPTHLVAAFRATLEEVIEADIVLH 253

Query: 305 LKEINSKKEISFPKN---------------IDFIFIGTKSDLYSTYTEEY---------- 339
           ++++     ++  ++                  + I  K DL      ++          
Sbjct: 254 VRDVADPDTLAQAEDVRKILRDLDIDVDDSDHVVEIWNKVDLLDEAGLQHLATMRESLPD 313

Query: 340 ---DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
               H++S+ TG G++ L+  I+  +      L   +  
Sbjct: 314 TDAVHVVSAVTGFGVDTLLVDIERRIGGGTVTLTVDVAP 352


>gi|30019905|ref|NP_831536.1| GTP-binding protein hflX [Bacillus cereus ATCC 14579]
 gi|228938984|ref|ZP_04101584.1| hypothetical protein bthur0008_16470 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971865|ref|ZP_04132486.1| hypothetical protein bthur0003_16440 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978473|ref|ZP_04138850.1| hypothetical protein bthur0002_16790 [Bacillus thuringiensis Bt407]
 gi|229043626|ref|ZP_04191333.1| hypothetical protein bcere0027_16740 [Bacillus cereus AH676]
 gi|229109326|ref|ZP_04238923.1| hypothetical protein bcere0018_15960 [Bacillus cereus Rock1-15]
 gi|229127192|ref|ZP_04256189.1| hypothetical protein bcere0015_16460 [Bacillus cereus BDRD-Cer4]
 gi|229144483|ref|ZP_04272886.1| hypothetical protein bcere0012_16430 [Bacillus cereus BDRD-ST24]
 gi|29895450|gb|AAP08737.1| GTP-binding protein hflX [Bacillus cereus ATCC 14579]
 gi|228638896|gb|EEK95323.1| hypothetical protein bcere0012_16430 [Bacillus cereus BDRD-ST24]
 gi|228656308|gb|EEL12149.1| hypothetical protein bcere0015_16460 [Bacillus cereus BDRD-Cer4]
 gi|228674104|gb|EEL29351.1| hypothetical protein bcere0018_15960 [Bacillus cereus Rock1-15]
 gi|228725701|gb|EEL76951.1| hypothetical protein bcere0027_16740 [Bacillus cereus AH676]
 gi|228781490|gb|EEM29691.1| hypothetical protein bthur0002_16790 [Bacillus thuringiensis Bt407]
 gi|228787955|gb|EEM35913.1| hypothetical protein bthur0003_16440 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820833|gb|EEM66858.1| hypothetical protein bthur0008_16470 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939485|gb|AEA15381.1| GTP-binding protein hflX [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 419

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQV 380


>gi|15618389|ref|NP_224674.1| GTP binding protein [Chlamydophila pneumoniae CWL029]
 gi|15836009|ref|NP_300533.1| GTP binding protein [Chlamydophila pneumoniae J138]
 gi|4376763|gb|AAD18618.1| GTP Binding Protein [Chlamydophila pneumoniae CWL029]
 gi|8978848|dbj|BAA98684.1| GTP binding protein [Chlamydophila pneumoniae J138]
          Length = 472

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 78/222 (35%), Gaps = 25/222 (11%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII--RNGY-KIVILGHSNAGKSSLF 236
           E E       + V   I  L   + + I Q      +  R G     ++G++N+GKS+L 
Sbjct: 187 EGEKQIELDRRMVRERIHKLSAQLKAVIKQRAERRKVKSRRGIPTFALIGYTNSGKSTLL 246

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
           N L   D   V D    T D  T    L  G  V ++DT G             K T   
Sbjct: 247 NLLTAAD-TYVEDKLFATLDPKTRKCVLPGGRHVLLTDTVGFIRKLPHTLVAAFKSTLEA 305

Query: 296 VENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYST--------Y 335
             + D++L + + +    +               +    I +  K D             
Sbjct: 306 AFHEDVLLHVVDASHPLALEHVQTTYDLFQELKIEKPRIITVLNKVDRLPQGSIPMKLRL 365

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                 LIS+ TGEG++ L++ +  I+  K   +  + P  +
Sbjct: 366 LSPLPVLISAKTGEGIQNLLSLMTEIIQEKSLHVTLNFPYTE 407


>gi|293376925|ref|ZP_06623142.1| GTP-binding protein HflX [Turicibacter sanguinis PC909]
 gi|292644471|gb|EFF62564.1| GTP-binding protein HflX [Turicibacter sanguinis PC909]
          Length = 422

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 106/272 (38%), Gaps = 31/272 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E Q ++ +  +   +  L G     L+     I +       E       + +  
Sbjct: 112 RAKTREAQLQVEVAQLRYMMPRLIG-LNASLSRQAGGIGSK---GPGEKKLELDRRRIEE 167

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAK------KDVA 245
            +  L  ++ S +   +    +R       + ++G++NAGKS+  NAL K        V 
Sbjct: 168 QVHRLNKELDSLVLARQNQRKLRKRNATPVVALVGYTNAGKSTTMNALLKISNSQLDKVV 227

Query: 246 IVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
              ++   T +  T  + L       ++DT G          +  + T  EV  ADL+L 
Sbjct: 228 FEKNMLFATLETSTRQIQLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEEVTEADLLLH 287

Query: 305 LKEINSKK---EISFPKN---------IDFIFIGTKSDL----YSTYTEEYDHLISSFTG 348
           + +++  +   +I                 +++  KSDL     +  T++    IS+   
Sbjct: 288 VVDLSHPEFETQIEITNKVLAELGVSETPMVYVYNKSDLAPDEIAPPTDQDSVRISAKNL 347

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           E ++ELIN IK  +   + K  F IP  + +L
Sbjct: 348 ENIDELINMIKHHIFQNYVKATFLIPYDRGNL 379


>gi|269303355|gb|ACZ33455.1| putative phage virion morphogenesis protein/GTP binding protein
           [Chlamydophila pneumoniae LPCoLN]
          Length = 472

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 78/222 (35%), Gaps = 25/222 (11%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII--RNGY-KIVILGHSNAGKSSLF 236
           E E       + V   I  L   + + I Q      +  R G     ++G++N+GKS+L 
Sbjct: 187 EGEKQIELDRRMVRERIHKLSAQLKAVIKQRAERRKVKSRRGIPTFALIGYTNSGKSTLL 246

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
           N L   D   V D    T D  T    L  G  V ++DT G             K T   
Sbjct: 247 NLLTAAD-TYVEDKLFATLDPKTRKCVLPGGRHVLLTDTVGFIRKLPHTLVAAFKSTLEA 305

Query: 296 VENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYST--------Y 335
             + D++L + + +    +               +    I +  K D             
Sbjct: 306 AFHEDVLLHVVDASHPLALEHVQTTYDLFQELKIEKPRIITVLNKVDRLPQGSIPMKLRL 365

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                 LIS+ TGEG++ L++ +  I+  K   +  + P  +
Sbjct: 366 LSPLPVLISAKTGEGIQNLLSLMTEIIQEKSLHVTLNFPYTE 407


>gi|229826082|ref|ZP_04452151.1| hypothetical protein GCWU000182_01447 [Abiotrophia defectiva ATCC
           49176]
 gi|229789824|gb|EEP25938.1| hypothetical protein GCWU000182_01447 [Abiotrophia defectiva ATCC
           49176]
          Length = 414

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           SSE ++Q  ++                  L+ +   I        + +    + +E ++ 
Sbjct: 117 SSEGKLQVEMAQLKYRSS---RLMGLGKNLSRLGGGIGTRGPGESKLETDRRAIRERVSQ 173

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +      + S     +   +      I I+G++NAGKS+  N +    + +  D    T 
Sbjct: 174 LRTEIEKVESSRDTLRKHRMSDGIPVIAIVGYTNAGKSTFLNKITDAGI-LAEDKLFATL 232

Query: 256 DVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D  T  L + +G  V  +DT G          +  K T  E + ADLIL + + ++ +  
Sbjct: 233 DPTTRSLKIPDGEEVLFTDTVGFISKLPHNLVDAFKSTLEEAKYADLILHVADASNPEVD 292

Query: 315 SFPK------------NIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEGLEELIN 356
              K                I    K D      +      +     S+ TGEG++EL+N
Sbjct: 293 EQMKVVYRTLEELKVVGKPVITFLNKQDKIGEGRIIKDLKADALVKGSAKTGEGIDELLN 352

Query: 357 KIKSILSNK 365
           KI  IL   
Sbjct: 353 KISEILREG 361


>gi|229069421|ref|ZP_04202710.1| hypothetical protein bcere0025_16260 [Bacillus cereus F65185]
 gi|229189968|ref|ZP_04316976.1| hypothetical protein bcere0002_16420 [Bacillus cereus ATCC 10876]
 gi|228593460|gb|EEK51271.1| hypothetical protein bcere0002_16420 [Bacillus cereus ATCC 10876]
 gi|228713560|gb|EEL65446.1| hypothetical protein bcere0025_16260 [Bacillus cereus F65185]
          Length = 419

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQV 380


>gi|218902989|ref|YP_002450823.1| GTP-binding protein [Bacillus cereus AH820]
 gi|218534958|gb|ACK87356.1| GTP-binding protein [Bacillus cereus AH820]
          Length = 419

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQV 380


>gi|71902193|ref|ZP_00684209.1| Small GTP-binding protein domain [Xylella fastidiosa Ann-1]
 gi|71728048|gb|EAO30257.1| Small GTP-binding protein domain [Xylella fastidiosa Ann-1]
          Length = 450

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 101/306 (33%), Gaps = 29/306 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           +   E + ++ +  +    + L   W          I        + +      ++ +  
Sbjct: 115 ACSHEGKLQVELAQLRHLATRLVRGWTHLERQRGGAIGLRGPGETQLETDRRLLQKRVEQ 174

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +    + +    +Q +   +     +I ++G++N+GKS+LFNAL     A   D    T 
Sbjct: 175 LQKRLSKVEVQRTQMRRARVRSEVPRIALVGYTNSGKSTLFNALTGAS-AYTADQLFATL 233

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           D     + L G    ++DT G             + T  E   ADL+L + +        
Sbjct: 234 DPKVRRIVLPGSSAMLADTVGFVRHLPHELVAAFRSTLSEAREADLLLHVIDAADPLREE 293

Query: 316 FPKNIDFI------------FIGTKSDLYSTYTEEYD-------------HLISSFTGEG 350
               +D +             +  K D         D               +S+  G G
Sbjct: 294 RIDQVDEVLQAIGAGELPQLLVFNKIDCIEGAEVRQDAQDGIPDQARRERVWLSARHGHG 353

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DI-IAE 407
           +E L   +   L  +  +    +P  +  L      ++ +     +E    L  D+ +AE
Sbjct: 354 VELLQQILDHRLKMQNVQSELRLPPSEGRLRARLHELKGVREEQTDEHGWLLKIDLSLAE 413

Query: 408 NLRLAS 413
             RLA+
Sbjct: 414 IERLAA 419


>gi|331698251|ref|YP_004334490.1| GTP-binding protein Era-like-protein [Pseudonocardia dioxanivorans
           CB1190]
 gi|326952940|gb|AEA26637.1| GTP-binding protein Era-like-protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 309

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 11/127 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+    +G  NAGKS+L NAL  + +AI +  P TTR  +   +      + + DT G
Sbjct: 12  RSGF-ACFVGRPNAGKSTLTNALLGQKIAITSSKPQTTRHAIRGIVHRPDAQLVVVDTPG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNIDFIFIG 326
           + +   ++               D+I      +          + +  +       + I 
Sbjct: 71  LHKPRTLLGSRLNDLVRETWAEVDVIGFCVPADVPVGRGDEFIAAEMKAVAGRTPVLGIV 130

Query: 327 TKSDLYS 333
           TK+DL  
Sbjct: 131 TKTDLAK 137


>gi|229121423|ref|ZP_04250650.1| hypothetical protein bcere0016_17270 [Bacillus cereus 95/8201]
 gi|228661887|gb|EEL17500.1| hypothetical protein bcere0016_17270 [Bacillus cereus 95/8201]
          Length = 419

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQV 380


>gi|237732552|ref|ZP_04563033.1| GTP-binding protein Era [Citrobacter sp. 30_2]
 gi|226908091|gb|EEH94009.1| GTP-binding protein Era [Citrobacter sp. 30_2]
          Length = 301

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTVAGIVRKHLPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|322379042|ref|ZP_08053445.1| iron(II) transport protein [Helicobacter suis HS1]
 gi|321148534|gb|EFX43031.1| iron(II) transport protein [Helicobacter suis HS1]
          Length = 710

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 23/208 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
               + ++G  N GKSSL NA++   +  V +  G T +   I +   GY + I D  GI
Sbjct: 2   ETIVVALVGQPNVGKSSLINAVSGAHLK-VGNFAGVTVEKTEISVVYGGYTINIIDLPGI 60

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSDLY 332
              +D   +E I + FL+ E+ DLIL + +  + +               +      D  
Sbjct: 61  YALNDFTIEEKITKRFLDHESYDLILNVVDCTNLERNLTLTTQLLNQHKILIALNMWDEA 120

Query: 333 STYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRH 379
                E D               S+ T    E+++  + ++    +     +  P+ K  
Sbjct: 121 CEEGLEIDIKMLSKILGAPCICTSAHTRLNTEKILEHLITLHQQAYTPPTITYSPAFKLE 180

Query: 380 LYHLSQTVRY--LE--MASLNEKDCGLD 403
           L HL++ +    LE   A LN  +  L+
Sbjct: 181 LDHLAKQLNTKPLENLHAYLNSHNLSLE 208


>gi|163731746|ref|ZP_02139193.1| GTP-binding protein HflX, putative [Roseobacter litoralis Och 149]
 gi|161395200|gb|EDQ19522.1| GTP-binding protein HflX, putative [Roseobacter litoralis Och 149]
          Length = 432

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 94/264 (35%), Gaps = 25/264 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ M  +S + + L   W                   + +    +  + L  
Sbjct: 128 AATREGVLQVEMAALSYQRTRLVRAWTHLERQRGGLGFVGGPGETQIEADRRAIDDQLTR 187

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +      +    +  +          I ++G++NAGKS+LFN L   DV    D+   T 
Sbjct: 188 LRRQLEKVVKTRALHRAARAKIPYPIIALVGYTNAGKSTLFNHLTGADVM-AKDMLFATL 246

Query: 256 DVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D     L L +G  V +SDT G             + T  EV  AD+I  +++I+  +  
Sbjct: 247 DPTMRRLRLPDGPEVILSDTVGFISELPTELVAAFRATLEEVLAADVICHVRDISHPETD 306

Query: 315 SFPK-------------NIDFIFIGTKSDLYSTYT----------EEYDHLISSFTGEGL 351
           +  K             +     I  K DL S             +     IS+ +GEGL
Sbjct: 307 AQAKDVQDIMTTLGVEDDRPAFEIWNKLDLLSEEDADAMRARADRDPAVFAISALSGEGL 366

Query: 352 EELINKIKSILSNKFKKLPFSIPS 375
           + L+  I   L  + ++   S+  
Sbjct: 367 DGLLEAITQTLQGQKREATLSLAF 390


>gi|317499645|ref|ZP_07957905.1| GTP-binding protein HflX [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893059|gb|EFV15281.1| GTP-binding protein HflX [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 412

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 78/202 (38%), Gaps = 23/202 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGYKI-VILGHSNAGKSSLFNALAKK 242
               + +   I  LK ++   +   + +  +  +N   +  I+G++NAGKS+L N     
Sbjct: 163 EMDRRLIRTRISRLKAELRDVVKHREVQRKQRQKNHLPVVCIVGYTNAGKSTLLNHFTNA 222

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V    D    T D  T  LDL  G  + ++DT G          E  K T  E + +DL
Sbjct: 223 GVYE-EDQLFATLDPTTKSLDLSGGQTILMTDTVGFIRKLPHHLVEAFKSTLEEAKYSDL 281

Query: 302 ILLLKEINSKKEISF------------PKNIDFIFIGTKSDL------YSTYTEEYDHLI 343
           IL + + ++ ++                     I    K DL            E    I
Sbjct: 282 ILHVVDASNPQKEKQMEAVYDTLKQLGANESPIITAFNKIDLLNGDEILKDPNAEAVVRI 341

Query: 344 SSFTGEGLEELINKIKSILSNK 365
           S   GEG ++L+ +I+ IL  +
Sbjct: 342 SGKNGEGTDQLLEQIEKILQKQ 363


>gi|254459937|ref|ZP_05073353.1| GTP-binding proten HflX [Rhodobacterales bacterium HTCC2083]
 gi|206676526|gb|EDZ41013.1| GTP-binding proten HflX [Rhodobacteraceae bacterium HTCC2083]
          Length = 423

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 112/296 (37%), Gaps = 35/296 (11%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   ++ M  +S + + L   W    TH+              + Q  S +  ++D L
Sbjct: 121 TSEGVLQVEMAALSYQRTRLVRAW----THLERQRGGLGFVGGPGETQIESDRRAIDDQL 176

Query: 198 -FLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             L+  +S  +    L    R       + ++G++NAGKS+LFN L   +V    D+   
Sbjct: 177 VRLRRKLSKVVKTRALHREARAKVPFPIVALVGYTNAGKSTLFNRLTGAEV-FAKDMLFA 235

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D     ++L +G  V +SDT G             + T  EV  ADLI+ +++I+ + 
Sbjct: 236 TLDPTMRAVELPDGPQVILSDTVGFISDLPTELVASFRATLEEVLAADLIVHVRDISHEG 295

Query: 313 EISFPKNIDFIF-------------IGTKSDLYSTYTEEY----------DHLISSFTGE 349
                 ++  I              +  K DL     ++              +SS +G 
Sbjct: 296 TEEQATDVRAILTSLGVGEGAKQIEVWNKIDLLEPDDKDAVLARAARHDDVIAVSSISGY 355

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLEMASLNEKDCGLDI 404
           G+++ +  ++  L  +       +P  + R    L +    +E     E    LD+
Sbjct: 356 GMQDFVVAVEEALEGEIITETLVLPYSEGRKRAWLFE-RSLVEAERQGENGFELDL 410


>gi|23501988|ref|NP_698115.1| GTP-binding protein [Brucella suis 1330]
 gi|23347938|gb|AAN30030.1| GTP-binding protein, putative [Brucella suis 1330]
          Length = 472

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 99/278 (35%), Gaps = 37/278 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ +   L   W   L   R          E +       + +  
Sbjct: 148 RARTKEGALQVELAHLNYQKGRLVRSWTH-LERQRGGGGFLGGPGETQI--EADRRLLQE 204

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            IL +K ++ + +    L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 205 KILRIKRELETVVRTRALHRQKRRKVPHPIVALVGYTNAGKSTLFNRMTGAQV-LAEDML 263

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 264 FATLDPTLRRIRLPHGETVILSDTVGFISNLPHHLVAAFRATLEEVVEADLILHVRDISD 323

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHL 342
                             I    +   + +  K                     E     
Sbjct: 324 PDNAAQAEDVENILAGLGIEPQDHARVVEVWNKIGNLDESAREAALRLAAAGSEEGRPIP 383

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +S+ TGEG++ L++ I++ ++     +   +     HL
Sbjct: 384 VSAITGEGVDRLLSLIETRIAGALGSVDLVLSPFDLHL 421


>gi|326573980|gb|EGE23929.1| GTP-binding proten HflX [Moraxella catarrhalis CO72]
          Length = 469

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 105/318 (33%), Gaps = 40/318 (12%)

Query: 120 NGKIDLLEAESLADLISSE------------------TEMQRRLSMEGMSGELSSLYGQW 161
           N  +   +  +L  LI                      E + ++ +  ++   + L   W
Sbjct: 91  NHTLTPSQERNLESLIKCRVLDRTGLILDIFAQRARTHEGKLQVELAQLNHLATRLVRGW 150

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
              L   +  I        + +      +  +  +    + +     QG+      +   
Sbjct: 151 TH-LERQKGGIGLRGPGETQLETDRRLLQIRVTQLKAKLDKVKQTRKQGRAKRQKSDIPT 209

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280
           I ++G++NAGKS+LFN L   ++    D    T D     +   G   V ++DT G    
Sbjct: 210 ISLVGYTNAGKSTLFNRLTDDNI-YAADQLFATLDPTLRRVKWPGVGNVVLADTVGFVRH 268

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----------ISFPKNIDFIFIGTKS 329
                 E    T  E   ADL+L + +  S+                  +   + +  K 
Sbjct: 269 LPHELVESFHATLEEALEADLLLHVIDAASEDMHAQIEAVNDVLEQIQADAPILLVFNKI 328

Query: 330 DLYSTYTE--------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           D      +         +   +S+    G+ +L+  ++ +LS +      ++P H   L 
Sbjct: 329 DKSGEPAKIHYQDHGVPHRVYVSAKENLGINQLMLAVQELLSGQLNHYTLTLPHHAGALK 388

Query: 382 HLSQTVRYLEMASLNEKD 399
           +    +  +E  S +E  
Sbjct: 389 NTLHELGVIESESFDELG 406


>gi|312128081|ref|YP_003992955.1| gtp-binding proten hflx [Caldicellulosiruptor hydrothermalis 108]
 gi|311778100|gb|ADQ07586.1| GTP-binding proten HflX [Caldicellulosiruptor hydrothermalis 108]
          Length = 509

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 85/242 (35%), Gaps = 28/242 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRS-------FIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
               G+L     Q +  L  +R                   E       + +   I  +K
Sbjct: 269 RTKEGKLQVELAQLLTLLPRLRGTGVLLSRLGGGIGTRGPGETKLEIDRRHIQRRIEEIK 328

Query: 201 NDISSHISQ---GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            ++          +   +      + I+G++NAGKS+L N ++K DV +V D    T D 
Sbjct: 329 KELEKVKKNREVQRKSRVENQVPVVSIIGYTNAGKSTLMNRISKADV-LVEDKLFATLDT 387

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
            T  +  +G    ++DT G          E    T  EV+ ++LIL + +I+        
Sbjct: 388 TTRRVYHKGKEFLLTDTVGFIRNLPHHLVEAFSSTLEEVKYSNLILNVVDISDPYYYDHI 447

Query: 318 K------------NIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEGLEELINKIKS 360
           K            NI  I +  K D         +       IS+  G G++ L++ I  
Sbjct: 448 KVSEDLLKQLGAENIPLIRVYNKIDKVDLSSVDVFDNLPHVFISAQDGRGIDTLLDMIVE 507

Query: 361 IL 362
            +
Sbjct: 508 RI 509


>gi|283832042|ref|ZP_06351783.1| GTP-binding protein Era [Citrobacter youngae ATCC 29220]
 gi|291071661|gb|EFE09770.1| GTP-binding protein Era [Citrobacter youngae ATCC 29220]
          Length = 301

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTVAGIVRKHLPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|254774754|ref|ZP_05216270.1| GTP-binding protein Era [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 299

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 86/239 (35%), Gaps = 34/239 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    VAI +  P TTR  +   +  E + + + DT G
Sbjct: 5   RSGF-VCLVGRPNTGKSTLTNALVGTKVAITSMRPQTTRHTIRGIVHREDFQIILVDTPG 63

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           +     ++ K             D+I L    +           ++  +       + I 
Sbjct: 64  LHRPRTLLGKRLNDLVRDTYAEVDVIGLCIPADEAIGPGDRWIVEQIRATAPKTTLVAIV 123

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D                          +S+ TG  ++ +I+ + + L       P  
Sbjct: 124 TKIDKVPKDRVAAQLVAVSELVGDGAEIVPVSAVTGAQVDIVIDVLAAALPPGPAYYPDG 183

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
             + +     +++ +R   +  + + +    +           + ++    D + L+D+
Sbjct: 184 ELTDEPEEVLMAELIREAALEGVRD-ELPHSLAVV--------IDEVNPREDRDDLIDV 233


>gi|148981048|ref|ZP_01816268.1| predicted GTPase [Vibrionales bacterium SWAT-3]
 gi|145961024|gb|EDK26347.1| predicted GTPase [Vibrionales bacterium SWAT-3]
          Length = 435

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 54/304 (17%), Positives = 106/304 (34%), Gaps = 34/304 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + + +
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRD 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   ++    Q + G   RN      + ++G++NAGKS+LFN +    V    D  
Sbjct: 170 RIKAILRRLAKVAKQREQGRRARNRAEIPTVSLVGYTNAGKSTLFNRITSAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     +DL       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKIDLSDVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASD 288

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGE 349
            +            E      +  + +  K D         D           +S+  GE
Sbjct: 289 DRFRENIQAVHDVLEEIDAHEVPTLVVMNKIDCMEDQKPRIDRDEEGAPRAVWVSAMEGE 348

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           G+E L   +   L+++  +    IP   +H   +      L+     E D   +++  ++
Sbjct: 349 GIELLFEALTERLASQMVQYRLCIPH--QHQGRIRSLFFQLKCIQQEEYDENGNLL-IDI 405

Query: 410 RLAS 413
           R+  
Sbjct: 406 RMQQ 409


>gi|75763078|ref|ZP_00742861.1| GTP-binding protein hflX [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489432|gb|EAO52865.1| GTP-binding protein hflX [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 419

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 110/294 (37%), Gaps = 26/294 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANSNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           +EEL+  I+S +  ++ K    IP  +  +        ++   S   +   L+I
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNNHAHVLSTSYENEGTKLEI 404


>gi|242240202|ref|YP_002988383.1| GTP-binding protein Era [Dickeya dadantii Ech703]
 gi|242132259|gb|ACS86561.1| GTP-binding protein Era [Dickeya dadantii Ech703]
          Length = 301

 Score = 74.1 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 22/199 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +LI+ + E        E+   K        +    K D  +
Sbjct: 71  KRAINRLMNRAASSSIGDVELIVFVVEGTHWTDDDEMVVNKLREQKTPVVLAINKVDNIT 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             +    H+               S+  G  ++ + + ++  L       P    + +  
Sbjct: 131 DKSLLLPHIQMLSEKMKFLDVVPISAEKGTNVDAVASIVRKHLPQSLHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVRYLEMASLNEK 398
            +  S+ +R   M  L E+
Sbjct: 191 RFMASEIIREKLMRFLGEE 209


>gi|229029571|ref|ZP_04185651.1| hypothetical protein bcere0028_16610 [Bacillus cereus AH1271]
 gi|228731770|gb|EEL82672.1| hypothetical protein bcere0028_16610 [Bacillus cereus AH1271]
          Length = 419

 Score = 74.1 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEVPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 IEELVKMIRSHIYKEYTKCEMLIPYDQGQV 380


>gi|302871403|ref|YP_003840039.1| GTP-binding proten HflX [Caldicellulosiruptor obsidiansis OB47]
 gi|302574262|gb|ADL42053.1| GTP-binding proten HflX [Caldicellulosiruptor obsidiansis OB47]
          Length = 509

 Score = 74.1 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 82/215 (38%), Gaps = 18/215 (8%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L+ +   I        + ++     +  + +I      +  +    +   I      + I
Sbjct: 296 LSRLGGGIGTRGPGETKLEIDRRHIQRRIEEIKKELEKVKKNREVQRKSRIENQVPVVSI 355

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G++NAGKS+L N ++K DV +V D    T D  T  +  +G    ++DT G        
Sbjct: 356 IGYTNAGKSTLMNRISKADV-LVEDKLFATLDTTTRRVYHKGREFLLTDTVGFIRNLPHH 414

Query: 285 EKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDL- 331
             E    T  EV+ ++LIL + +I+        K            NI  I +  K D  
Sbjct: 415 LVEAFSSTLEEVKYSNLILNVVDISDPYYYDHIKVSEDLLKQLGAENIPLIRVYNKIDKV 474

Query: 332 ----YSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +       +S+  G G++ L++ I   +
Sbjct: 475 DISSVDVFDNVPYVFVSAQDGRGIDTLLDMIVERI 509


>gi|229059526|ref|ZP_04196908.1| hypothetical protein bcere0026_16380 [Bacillus cereus AH603]
 gi|229166741|ref|ZP_04294491.1| hypothetical protein bcere0007_17110 [Bacillus cereus AH621]
 gi|228616738|gb|EEK73813.1| hypothetical protein bcere0007_17110 [Bacillus cereus AH621]
 gi|228719809|gb|EEL71403.1| hypothetical protein bcere0026_16380 [Bacillus cereus AH603]
          Length = 419

 Score = 74.1 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 101/270 (37%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAK------KDVAI 246
           I  L  ++ + ++Q +     R       + ++G++NAGKS++ N + +      +    
Sbjct: 171 IAALNKELEALVAQRQTQRKQRKKNEIPVVSLVGYTNAGKSTIMNTMLEIFNGTVEKQVF 230

Query: 247 VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KEINSKKEISFP------------KNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            + ++                   +NI  I+   KSDL        +E    +S+    G
Sbjct: 291 VDYSNPNYEQLIDITNETLKKIGVENIPTIYAYNKSDLVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  ++S +  ++ K    IP  +  +
Sbjct: 351 IEELVEVVRSHIYKEYTKCEMLIPYDQGQV 380


>gi|333000426|gb|EGK20008.1| GTP-binding protein Era [Shigella flexneri VA-6]
          Length = 301

 Score = 74.1 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|225163906|ref|ZP_03726198.1| GTP-binding protein HflX [Opitutaceae bacterium TAV2]
 gi|224801483|gb|EEG19787.1| GTP-binding protein HflX [Opitutaceae bacterium TAV2]
          Length = 428

 Score = 74.1 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 103/292 (35%), Gaps = 29/292 (9%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T     ++++  M   L  L   W    TH+           E E       + V +
Sbjct: 125 RAQTREAVLQVALARMEYSLPRLTRAW----THLSRQRGKGKMGGEGETQLEQDRRLVRD 180

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  LK ++     Q  +    R    +    I+G++NAGKSSL N L    V +  D  
Sbjct: 181 RITRLKKELIEVRKQRTVQRHKRQRVPVPTAAIVGYTNAGKSSLLNTLTGAAV-LAEDKL 239

Query: 252 GTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D  T  L L G   + ++DT G          E  K T  E   AD ++ + ++ +
Sbjct: 240 FATLDPTTRQLLLRGNQKLLVTDTVGFIRRLPHGLVEAFKATLEEAIVADFLIHVLDVTA 299

Query: 311 KKEISF------------PKNIDFIFIGTKSDLYSTY-------TEEYDHLISSFTGEGL 351
               +                   + +  K+D             +     +S+ TG+GL
Sbjct: 300 PNVAAHHATTLSVLKELGADEKRILTVFNKTDAADEPHLARARQLDRNGIFVSARTGDGL 359

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
             L++    ++++ F      IP  +  +      + +++     +    ++
Sbjct: 360 PALVDHCLELIADAFGSTKLFIPHSRHDVIARLHAIGHIQFEDTRDDGVYIE 411


>gi|82777992|ref|YP_404341.1| GTP-binding protein Era [Shigella dysenteriae Sd197]
 gi|309784619|ref|ZP_07679254.1| GTP-binding protein Era [Shigella dysenteriae 1617]
 gi|123561860|sp|Q32CV5|ERA_SHIDS RecName: Full=GTPase Era
 gi|81242140|gb|ABB62850.1| GTP-binding protein [Shigella dysenteriae Sd197]
 gi|308927516|gb|EFP72988.1| GTP-binding protein Era [Shigella dysenteriae 1617]
          Length = 301

 Score = 74.1 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFPKNIDFIFIG--TKSDLYS 333
              + +   K     + + +L++ + E     ++ +  ++  ++     I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTLDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|33593414|ref|NP_881058.1| GTP-binding protein Era [Bordetella pertussis Tohama I]
 gi|33597818|ref|NP_885461.1| GTP-binding protein Era [Bordetella parapertussis 12822]
 gi|33602720|ref|NP_890280.1| GTP-binding protein Era [Bordetella bronchiseptica RB50]
 gi|81836247|sp|Q7VW40|ERA_BORPE RecName: Full=GTPase Era
 gi|81836545|sp|Q7W5J7|ERA_BORPA RecName: Full=GTPase Era
 gi|81836774|sp|Q7WD33|ERA_BORBR RecName: Full=GTPase Era
 gi|33572770|emb|CAE42702.1| GTP-binding protein [Bordetella pertussis Tohama I]
 gi|33574247|emb|CAE38579.1| GTP-binding protein [Bordetella parapertussis]
 gi|33577162|emb|CAE35719.1| GTP-binding protein [Bordetella bronchiseptica RB50]
 gi|332382823|gb|AEE67670.1| GTP-binding protein Era [Bordetella pertussis CS]
          Length = 296

 Score = 74.1 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 76/193 (39%), Gaps = 22/193 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  N GKS+L NAL    ++IV+    TTR  +   L  E       DT G
Sbjct: 7   RAGF-VAIVGRPNVGKSTLTNALIGTKISIVSRKAQTTRHRIHGVLTREHEQFVFVDTPG 65

Query: 277 IRETDDIVEKEGIKRTF-LEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKS 329
            +          + R     + + D+++ + E       ++K     PK+   I + +K 
Sbjct: 66  FQTRHGGAMNRMMNRVVTQALADVDVVVHVVEAGKWSEGDAKLLPLLPKSRRSILVVSKI 125

Query: 330 DLYSTYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           D      E +                 +S+  G+ L++L+++I + L            +
Sbjct: 126 DALKNRDELFPFVSKLMALHAYDAVVPVSATKGQQLDQLLDEIAAGLPQGDPMFEEDTLT 185

Query: 376 HKRHLYHLSQTVR 388
            +   +  ++ VR
Sbjct: 186 DRPVRFIAAELVR 198


>gi|307329243|ref|ZP_07608408.1| GTP-binding proten HflX [Streptomyces violaceusniger Tu 4113]
 gi|306885142|gb|EFN16163.1| GTP-binding proten HflX [Streptomyces violaceusniger Tu 4113]
          Length = 500

 Score = 74.1 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 106/301 (35%), Gaps = 31/301 (10%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q +  +  + G   SL  Q     +       A     E +   +   + +   +  
Sbjct: 193 SLAQMQYMLPRLRGWGQSLSRQMGGGGSGSSGGGMATRGPGETKIETD--RRRIREKMAK 250

Query: 199 LKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           ++ +I+   +   +    R  +K+    I G++NAGKSSL N L    V +   +  T  
Sbjct: 251 MRREIAEMKTGRDIKRQERRRHKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLD 310

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +       G L  ++DT G          E  + T  EV +ADLI+ + + +      
Sbjct: 311 PTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDADLIVHVVDGSHPAPEE 370

Query: 316 FPK------------NIDFIFIGTKSDLYSTYT-------EEYDHLISSFTGEGLEELIN 356
                          ++  I +  K+DL            E     +S+ +G G++EL+ 
Sbjct: 371 QLAAVREVIRDVGAVDVPEIVVINKADLADPLVVQRLLRMERRAMAVSARSGLGIDELLA 430

Query: 357 KIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVRYLEM---ASLNEKDCGLDIIAENLR 410
            I   L     ++   +P          H+   V   E     +L +     ++ AE LR
Sbjct: 431 VIDEELPRPQVEIEVLLPYTHGKLVARTHVEGEVLSEEHTPEGTLLKARVHEELAAE-LR 489

Query: 411 L 411
            
Sbjct: 490 R 490


>gi|312196053|ref|YP_004016114.1| GTP-binding protein Era [Frankia sp. EuI1c]
 gi|311227389|gb|ADP80244.1| GTP-binding protein Era [Frankia sp. EuI1c]
          Length = 343

 Score = 74.1 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 11/127 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+    +G  NAGKS+L NAL    +AI +  P TTR  +   +      + + DT G
Sbjct: 28  RSGF-ACFVGRPNAGKSTLTNALVGTKIAITSGRPQTTRHAVRGIVHRPDAQLVLVDTPG 86

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-FPKNIDFIFIG 326
           +     ++ +         +   D++      +           +E+S  P     I I 
Sbjct: 87  LHRPRTLLGERLNDVVRATLSEVDVVGFCAPADEPVGRGDRYIAEELSRLPGRTPVIAIL 146

Query: 327 TKSDLYS 333
           TK+DL  
Sbjct: 147 TKTDLVK 153


>gi|194476731|ref|YP_002048910.1| hypothetical protein PCC_0251 [Paulinella chromatophora]
 gi|171191738|gb|ACB42700.1| hypothetical protein PCC_0251 [Paulinella chromatophora]
          Length = 518

 Score = 74.1 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 95/241 (39%), Gaps = 16/241 (6%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKL--GEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
           N    + +   +  K  I S   +      E+ R  + IV+ G  ++GK+SL  AL +K 
Sbjct: 89  NLLHIDQILKQIRNKVQIKSLYEERNRIENELERGDFLIVLFGAGSSGKTSLVRALLEKK 148

Query: 244 VAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           V  V    G+T D L   + ++G    + + DT GI E     +   IK  +     ADL
Sbjct: 149 VGRVEASMGSTVDCLNYRMHIQGLKRKLTLIDTPGIFEAGQQGQLREIKARWQA-SRADL 207

Query: 302 ILLLKEINSKKE----ISFPK--NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           +LL+ + + + E    I   K      + +  KSDL +   E +          GL + +
Sbjct: 208 VLLIVDSDLRLEEMEAIRSLKALRKRLLIVLNKSDLLTEQEENFLLARIRHRCIGLIKPV 267

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415
           N I  I + +            +    L+Q             + G ++IA+N+ L    
Sbjct: 268 NIIAVISAIQPIHGIEP-----QSFQQLAQIKVLTNRMISILHNEGEELIADNILLQCQY 322

Query: 416 L 416
           L
Sbjct: 323 L 323


>gi|119776156|ref|YP_928896.1| GTP-binding protein HflX [Shewanella amazonensis SB2B]
 gi|119768656|gb|ABM01227.1| GTP-binding protein HflX [Shewanella amazonensis SB2B]
          Length = 435

 Score = 74.1 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 111/313 (35%), Gaps = 34/313 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I      +     Q +      +   + ++G++NAGKS+LFN L   +V    D    T
Sbjct: 173 NINRRLEKVDKQREQSRRARQRSDMAAVSLVGYTNAGKSTLFNTLTSAEV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
            D     L+L      ++DT G             K T  E   ADL+L + +   +   
Sbjct: 232 LDPTLRKLELPDGAAILADTVGFIRHLPHDLVAAFKATLQETREADLLLHVIDCADEKMR 291

Query: 312 ----------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                     KEI     I  + +  K DL        D           +S+   +GL+
Sbjct: 292 DNIEQVQAVLKEID-ADEIPQLIVCNKIDLVEGIKPAIDRDDTGKPFRVWLSAQQNQGLD 350

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL--- 409
            L   ++ ++ N   +L   IP+   H  +L Q  R   +      D G  I++  L   
Sbjct: 351 LLRQAVQELVGNVIAELTLKIPATAGH--YLGQFYRLDAIQQKEYDDLGNCILSVRLPDA 408

Query: 410 ---RLASVSLGKI 419
              RLA  S G++
Sbjct: 409 DWRRLAKQSQGEL 421


>gi|300788458|ref|YP_003768749.1| GTP-binding protein Era [Amycolatopsis mediterranei U32]
 gi|299797972|gb|ADJ48347.1| GTP-binding protein Era [Amycolatopsis mediterranei U32]
          Length = 303

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 76/204 (37%), Gaps = 29/204 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+    +G  NAGKS+L NAL    VAI +  P TTR  +   +  E   + + DT G
Sbjct: 5   RSGF-ACFVGRPNAGKSTLTNALVGTKVAITSSKPQTTRHAIRGIVHREDAQLVLIDTPG 63

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKN---ID 321
           +     ++ +             D++      N K            ++I+  KN     
Sbjct: 64  LHRPRTLLGERLNDIVHTTWSEVDVVGFCVPANEKIGPGDKFIAAELQKIALRKNGMGTP 123

Query: 322 FIFIGTKSDLYS---------TYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKK 368
            + I TK+DL              E  D      +S+  G  ++ L + +   L    + 
Sbjct: 124 VLGIVTKTDLVQPQQVAEQLLALQEVMDFAELIPVSAVDGFQVDALADLLVGKLPEGPQL 183

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEM 392
            P    + +     +++ +R   +
Sbjct: 184 YPGGELTDEPEQTLVAELIREAAL 207


>gi|170767223|ref|ZP_02901676.1| GTP-binding protein Era [Escherichia albertii TW07627]
 gi|170123557|gb|EDS92488.1| GTP-binding protein Era [Escherichia albertii TW07627]
          Length = 301

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|320534204|ref|ZP_08034727.1| GTP-binding protein Era [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133581|gb|EFW26006.1| GTP-binding protein Era [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 392

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 78/201 (38%), Gaps = 24/201 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+   I+G  NAGKS+L NAL    +AI +  P TTR  +   +  +   + + D
Sbjct: 89  EDFRAGF-ACIVGRPNAGKSTLTNALVGAKIAITSGRPQTTRHNVRGVIHQDNAQIVLVD 147

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIF 324
           T G+     ++ K         + + D+++     N K         ++++  +    + 
Sbjct: 148 TPGLHRPRTLLGKRLNDLVRETLTDVDVVVFCVPANEKIGPGDRFITRDLAELR-TPVVA 206

Query: 325 IGTKSD-----------LYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + TK+D           L  +   E+     +S+   E ++ L   +   +       P 
Sbjct: 207 VVTKADTVTREALAAQLLAVSELGEWADIVPVSAQRNEQIDVLKEVLLKYMPLSPPLYPT 266

Query: 372 SIPSHKRHLYHLSQTVRYLEM 392
              + +     +++ VR   +
Sbjct: 267 GEITDEPQQVMIAELVREAAL 287


>gi|331668216|ref|ZP_08369068.1| conserved hypothetical protein [Escherichia coli TA271]
 gi|331064730|gb|EGI36637.1| conserved hypothetical protein [Escherichia coli TA271]
          Length = 290

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|169628762|ref|YP_001702411.1| GTP-binding protein Era [Mycobacterium abscessus ATCC 19977]
 gi|169240729|emb|CAM61757.1| GTP-binding protein Era homolog [Mycobacterium abscessus]
          Length = 304

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 73/200 (36%), Gaps = 25/200 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + VAI ++ P TTR  +   +  E + + + DT G
Sbjct: 7   RSGF-VCFVGRPNTGKSTLTNALVGQKVAITSNRPQTTRHTIRGIVHRENFQIVLVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           +     ++ +             D+I L    +           ++          I I 
Sbjct: 66  LHRPRTLLGQRLNDLVRDTYSEVDVIGLCIPADEGIGPGDKWIYEQIKLVAPRTTLIAIV 125

Query: 327 TKSDLYSTY--------------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D  S                 E     +S+ +G  +E L   + S L       P  
Sbjct: 126 TKIDKVSKERVAEQLLSVSQLVGKEVDIVPVSAVSGAQVEVLTEVLASKLQPGPAFYPDG 185

Query: 373 IPSHKRHLYHLSQTVRYLEM 392
             + +     +++ +R   +
Sbjct: 186 ELTDEPEEVLMAELIREAAL 205


>gi|84496849|ref|ZP_00995703.1| GTP-binding protein Era [Janibacter sp. HTCC2649]
 gi|84383617|gb|EAP99498.1| GTP-binding protein Era [Janibacter sp. HTCC2649]
          Length = 317

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 79/214 (36%), Gaps = 27/214 (12%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G  NAGKS+L NAL  + VAI +  P TTR  +   +      + + DT G+ +   
Sbjct: 23  CLIGRPNAGKSTLTNALVGEKVAITSSKPQTTRHTIRGIVTSPMSQIVLVDTPGLHKPRT 82

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTKSD 330
           ++ +         + N D++      + +             E+   K    I + TKSD
Sbjct: 83  LLGERLNDLVRETLLNVDVVGFCLPADQRIGPGDQWIARELAELRQAKRTPIIALATKSD 142

Query: 331 LYSTYTE-------------EYDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSH 376
                                     S+  G+ ++ +   I   L      L P  + + 
Sbjct: 143 KVDRQRLAEHLISIDQLGEWAEIVPCSATKGDQVDTVAAVIAKYLPPSPGPLYPDDVLTD 202

Query: 377 KRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL 409
           + H   +++ VR   +  + +E    L ++ E +
Sbjct: 203 EPHAIMIAELVREAALEGVRDELPHSLAVVVEEM 236


>gi|127511501|ref|YP_001092698.1| GTP-binding protein, HSR1-related [Shewanella loihica PV-4]
 gi|126636796|gb|ABO22439.1| GTP-binding protein, HSR1-related [Shewanella loihica PV-4]
          Length = 432

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 61/306 (19%), Positives = 108/306 (35%), Gaps = 27/306 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTYEGKLQVELAQLRHMSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     Q +          + ++G++NAGKS+LFNAL   +V    D    T
Sbjct: 173 TINKRLEKVDKQREQSRRARQRSELATVSLVGYTNAGKSTLFNALTVSEV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
            D     LDL+   V ++DT G             K T  E   ADL+L + +   +   
Sbjct: 232 LDPTLRKLDLQDGSVILADTVGFIRHLPHDLVAAFKATLQETREADLLLHVVDSADENMG 291

Query: 312 ---KEISF------PKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEE 353
              +++         + I  + +  K DL      + D+          +S+    GL+ 
Sbjct: 292 DNFEQVQLVLKEIGAEEIPQLIVCNKIDLLEDVGPKIDYDGDGVPIRVWVSAQQSLGLDL 351

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA- 412
           L   I  ++     +L   IP+   H  +L Q  R   +      D G  I++  L  A 
Sbjct: 352 LEKAINQLVGRAILELTLRIPATAGH--YLGQFYRLDVIQQKEYDDLGNCILSVRLLEAD 409

Query: 413 SVSLGK 418
              L K
Sbjct: 410 WHRLAK 415


>gi|296121964|ref|YP_003629742.1| GTP-binding proten HflX [Planctomyces limnophilus DSM 3776]
 gi|296014304|gb|ADG67543.1| GTP-binding proten HflX [Planctomyces limnophilus DSM 3776]
          Length = 464

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 109/280 (38%), Gaps = 31/280 (11%)

Query: 119 ENGKIDLLEAESLADLIS-----SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           E G++ +  +E + D+ +     +E  +Q  L+    +          ++++        
Sbjct: 128 ETGRVIVDRSELILDIFATHARTAEARLQVELAQLQYNRTRLKRLWTHLERIDGGIGASR 187

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
                 ++ +       + ++++     ++     + ++ +  R+   + ++G++NAGKS
Sbjct: 188 GP--GEKQIETDRRLIDQRISELQSSLKEVEQ--RRERMVKQRRDHALVSLVGYTNAGKS 243

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRT 292
           +L  AL  ++V I   +   T D  T    + G+    +SDT G             K T
Sbjct: 244 TLMRALTGEEVYIADQLFA-TLDTKTRLWKIPGWGDALLSDTVGFVRDLPHSLVASFKST 302

Query: 293 FLEVENADLILLLKEINSKKEISFPKN------------IDFIFIGTKSDLYSTYTE--- 337
             E  +ADL+L + + ++ +  +                 +FI +  K+D          
Sbjct: 303 LEEARHADLLLHVVDASNPEAEAQVATVEAVLEEIGVELKNFILVLNKADQVPDRMALDL 362

Query: 338 -----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                E+   IS+ TG+GL+ L   +   L +  + +  S
Sbjct: 363 LRARYEWSVSISARTGDGLDRLAQLVVDRLGDGLESVTVS 402


>gi|47154997|emb|CAE85196.1| YeeP protein [Escherichia coli]
          Length = 353

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 113/282 (40%), Gaps = 39/282 (13%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKN----------DISSHISQGKLGEIIRNGYKIVILGH 227
           F   E +  F+    +N    ++            +S HI +  L ++  +   I I+G 
Sbjct: 49  FPVREVLSFFTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTSHEPVIGIMGK 107

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EK 286
           S AGKSSL NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ D   E 
Sbjct: 108 SGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFRLSGHGHNMVITDLPGVGESRDRDAEY 167

Query: 287 EGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTE 337
           E + R    +   DL+L L + + +         + I    +   +F+ T++D  +    
Sbjct: 168 EALYRDI--LPELDLVLWLIKADDRALSVDEYFWRHILHRGHQQVLFVVTQAD-KTEPCH 224

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
           E+D      +    + +  K    +   F+ +   +    R  + L   V  L  A  + 
Sbjct: 225 EWDVAGIQPSPAQAQNIREK-TEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDH 283

Query: 398 KDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
               L      ++  E++R  +    + TG V      D IF
Sbjct: 284 AASPLMTRLQDELRTESVRSQARE--QFTGAV------DRIF 317


>gi|311064218|ref|YP_003970943.1| GTP-binding protein [Bifidobacterium bifidum PRL2010]
 gi|310866537|gb|ADP35906.1| Era GTP-binding protein [Bifidobacterium bifidum PRL2010]
          Length = 336

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 10/181 (5%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
             R+G+ I ++G  N GKS+L NAL  K VAI +  P TTR  +   L  +   + + DT
Sbjct: 25  AYRSGF-IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDT 83

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK-----S 329
            GI     ++ +         + + D I  L   +  +EI          + T       
Sbjct: 84  PGIHRPRTLLGQRLNDIVEESLSDIDAIAFLLPAD--QEIGPGDKRILSRLRTDFATKGE 141

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           D    +      +++     G ++LI+K+  I  N+F      +P       +L +  + 
Sbjct: 142 DGTFAWKVPLIAIVTKIDQLGRQQLIDKLIEI--NEFADFSDIVPVSALGHDNLDEVRQV 199

Query: 390 L 390
           L
Sbjct: 200 L 200


>gi|258542822|ref|YP_003188255.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-01]
 gi|256633900|dbj|BAH99875.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-01]
 gi|256636959|dbj|BAI02928.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-03]
 gi|256640012|dbj|BAI05974.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-07]
 gi|256643068|dbj|BAI09023.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-22]
 gi|256646123|dbj|BAI12071.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-26]
 gi|256649176|dbj|BAI15117.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-32]
 gi|256652163|dbj|BAI18097.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655220|dbj|BAI21147.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-12]
          Length = 448

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 86/216 (39%), Gaps = 28/216 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + I+ LK D+        L    R       + ++G++NAGKS+LFNAL   
Sbjct: 182 EADRRMIGDRIVRLKKDLEQVRRTRGLHRQARKRVPFPVVALVGYTNAGKSTLFNALTGA 241

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V    D    T D     +DL  G  V +SDT G             + T  EV  AD+
Sbjct: 242 TV-YAQDQLFATLDPTMRAIDLPSGRRVILSDTVGFISDLPTELIAAFRATLEEVAEADI 300

Query: 302 ILLLKEINSKKEISFPKN-------------------IDFIFIGTKSDLY----STYTEE 338
           IL ++++      S  K+                      I +  K DL     +    E
Sbjct: 301 ILHVRDVAHPDSASQKKDVLGVLEGMAKDDMLEQDWPERIIEVLNKVDLLGGPEAIPQTE 360

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               IS+ TGEGLE L+ +I + ++   + + + +P
Sbjct: 361 DTIAISAITGEGLETLLARIDARITQGMETVRYCLP 396


>gi|304311745|ref|YP_003811343.1| GTP-binding protein HflX [gamma proteobacterium HdN1]
 gi|301797478|emb|CBL45698.1| GTP-binding protein HflX [gamma proteobacterium HdN1]
          Length = 430

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 102/286 (35%), Gaps = 29/286 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   R  I        + +         + 
Sbjct: 116 RARTHEGKLQVELAQLEHLSTRLIRGWTH-LERQRGGIGLRGPGETQLETDRRLIGHRIR 174

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +    SQ +          + ++G++NAGKS+LFNA+ + DV    D    T
Sbjct: 175 TIQKRLEQVRKQRSQARRSRQRNEVPTVSLVGYTNAGKSTLFNAMTRSDV-YAADQLFAT 233

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--NSK 311
            D     + +     + ++DT G          E  + T  E   +DL+L + +    ++
Sbjct: 234 LDPTLRRIPIPDVGPIVLADTVGFIRHLPHKLVESFRATLEESRESDLLLHVVDACSEAR 293

Query: 312 KEISFPKN----------IDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
            +  F  N          I  + +  K DL   +    +           +S+ TG G++
Sbjct: 294 DDNIFQVNTVLKETGAGEIPTLMVYNKIDLMGEFPPRVERDADGVSQAVWLSAQTGAGIQ 353

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            L++ ++  L  +  +    +      L    +   Y +   LNE+
Sbjct: 354 LLLDVLRERLGKEMVEAGLWLSPAMGEL----RAALYRQQGVLNEQ 395


>gi|256019137|ref|ZP_05433002.1| hypothetical protein ShiD9_09494 [Shigella sp. D9]
          Length = 290

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQRVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|212224625|ref|YP_002307861.1| HflX-related GTP-binding protein [Thermococcus onnurineus NA1]
 gi|212009582|gb|ACJ16964.1| HflX-related GTP-binding protein [Thermococcus onnurineus NA1]
          Length = 429

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 82/222 (36%), Gaps = 35/222 (15%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAI 246
           K +   +  ++ ++    +  ++    R       + + G++NAGKS+L N LA +++  
Sbjct: 154 KHIRYRMGKIRKELERVKADREVKRKRREEVGFILLALAGYTNAGKSTLLNTLAGEEI-E 212

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             D   TT D  T    L G  V ++DT G  +       E    T  E+  AD++LL+ 
Sbjct: 213 ARDQMFTTLDTTTRRFKLGGKRVLVTDTVGFIDGLPPFIVEAFHSTLEEIVKADIVLLVL 272

Query: 307 EINSKKEISFPK--------------NIDFIFIGTKSDLYS------------TYTEEYD 340
           +++        K              +   + +  K DL S               EE  
Sbjct: 273 DVSEPWPEIRRKFLASLNVLRELKALDKPMVVVLNKRDLTSEEDVKDKAERIIEIVEERG 332

Query: 341 HLIS-----SFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
             +S     S     LEEL   ++ ++    K   F I   +
Sbjct: 333 INVSRVVSISAKFGQLEELYGALEEVVLTLPKYGAFEITVRE 374


>gi|19553483|ref|NP_601485.1| GTP-binding protein Era [Corynebacterium glutamicum ATCC 13032]
 gi|25008421|sp|Q8NNB9|ERA_CORGL RecName: Full=GTPase Era
 gi|21325056|dbj|BAB99678.1| GTPases [Corynebacterium glutamicum ATCC 13032]
          Length = 305

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 25/203 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI  + P TTR  +   +  +   + + DT G
Sbjct: 11  RSGF-VSFVGRPNTGKSTLTNALVGEKIAITANQPETTRHPIRGLVHRDNAQIIVVDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIG 326
           +     ++ +   +       + DLI      N K                     + I 
Sbjct: 70  LHRPRTLLGERLNEAVKDTYADVDLIGFTVPANEKIGPGDRWILEAVRKVSPKTPILGII 129

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK+D  S                       +SS +GE +E LI  +  +L    K  P  
Sbjct: 130 TKADSVSRDLVAAQLMAVHELLGGNSEVVPVSSTSGENVETLIKVMTDLLPEGPKFYPDD 189

Query: 373 IPSHKRHLYHLSQTVRYLEMASL 395
             + +     +++ +R   ++ L
Sbjct: 190 HITDEDTNTRIAEAIREAALSGL 212


>gi|66805837|ref|XP_636640.1| hypothetical protein DDB_G0288609 [Dictyostelium discoideum AX4]
 gi|60465029|gb|EAL63136.1| hypothetical protein DDB_G0288609 [Dictyostelium discoideum AX4]
          Length = 398

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 12/188 (6%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + I+G  NAGKS+L N++  + +  V+    TTRD +      +   +   DT GI +
Sbjct: 115 LNVAIIGAPNAGKSTLVNSIVGEKICAVSPTEHTTRDAVLGIYSKDDTQILFHDTPGIIK 174

Query: 280 TDD--IVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKNIDFIFIGTKSDLYSTY 335
             +     +E +   +  V+ AD++LL+ +   N+  +  F        +     L    
Sbjct: 175 NFNRMAHVREFVNLAWGVVKEADIVLLVVDATNNNSSDTEFIVGKLEEQMLN---LIKRM 231

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
             E  +  ++      EEL     +I+++   +  F +  +K  L    +T+  + ++ L
Sbjct: 232 RMEQTNAKANAATASNEEL----GAIVNDSLDEKEFILVVNKVDLVKKKETLVQM-ISQL 286

Query: 396 NEKDCGLD 403
           NE +   D
Sbjct: 287 NEGNIFTD 294


>gi|307298535|ref|ZP_07578338.1| ferrous iron transport protein B [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915700|gb|EFN46084.1| ferrous iron transport protein B [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 649

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI +LG+ N GK+S+FNAL      IV + PG T +  T  + L  + V + D  G   
Sbjct: 13  IKIALLGNPNVGKTSIFNALTGS-RQIVANWPGVTVEKRTGVMKLANHTVDVVDLPGTYT 71

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                  E I R FL  E  D+ L++ +  + +              D +      D   
Sbjct: 72  LGATSLDERIARDFLINERPDVALVIGDAVNLERSLYLLLQVLELRGDVVLAVNAIDEAR 131

Query: 334 TYTEEYDHL------------ISSFTGEGLEELINKI 358
               E D               S+ TGEG+EEL N +
Sbjct: 132 KAGFEIDKHELSKQLGIPVVLTSAVTGEGIEELKNTL 168


>gi|291166975|gb|EFE29021.1| GTP-binding protein HflX [Filifactor alocis ATCC 35896]
          Length = 428

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 97/253 (38%), Gaps = 26/253 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +  +L  L       L+   + I A     ++ +      +  + 
Sbjct: 120 RARTGEGKLQVELAQLKYKLPRLINS-STNLSRTGAGIGARGPGEKKLETDKRRIQRKIF 178

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-------AIV 247
           +I     ++  +    + G +      + + G++NAGKS+LFN L K+           V
Sbjct: 179 EIERELKEVKHNREVQRKGRLKSELPIVALAGYTNAGKSTLFNELLKEHKEYTEEKEVFV 238

Query: 248 TDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
            ++   T D       L  G    ++DT G               T  E++ ADLIL + 
Sbjct: 239 KNMLFATLDTTLRKSQLPNGMEYLLTDTVGFVSNLPHDLVNAFHSTLEEIKYADLILHVV 298

Query: 307 EINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFTGEG 350
           +++++K                  +I  + +  K DL         E     IS+ TG  
Sbjct: 299 DVSNEKYDLQMNTTQHVLKEIGVGDIPIVTVFNKIDLLEENFVISKESNKISISAKTGYH 358

Query: 351 LEELINKIKSILS 363
            +EL+ KI+SI+ 
Sbjct: 359 KQELLEKIQSIVC 371


>gi|226325449|ref|ZP_03800967.1| hypothetical protein COPCOM_03254 [Coprococcus comes ATCC 27758]
 gi|225206192|gb|EEG88546.1| hypothetical protein COPCOM_03254 [Coprococcus comes ATCC 27758]
          Length = 414

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 78/207 (37%), Gaps = 20/207 (9%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           K  +  +     ++  H    +          + I+G++NAGKS+L N L    V +  D
Sbjct: 172 KNRIAQLNRELREVKRHRELTREQRTKNRIPVVAIVGYTNAGKSTLLNTLTGAGV-LQED 230

Query: 250 IPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D  T    L  G  + ++DT G          +  K T  E + ADLIL + + 
Sbjct: 231 QLFATLDPTTRSRKLPSGQEILLTDTVGFIRKLPHHLIDAFKSTLEEAKYADLILHVVDA 290

Query: 309 NSKK----------EISFPKNIDFIFI--GTKSDLYST------YTEEYDHLISSFTGEG 350
           ++ +           +   + +D   +    K D          +  +    +S+ TGEG
Sbjct: 291 SNPQMDEQMYVVYETLQRLEAMDKPVVTAFNKMDRIGESLTVRDFKADRIVQVSAKTGEG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHK 377
           LE L+  I+ IL  +   +       +
Sbjct: 351 LEALLQAIEEILREQKIYIERVYSYQE 377


>gi|225575070|ref|ZP_03783680.1| hypothetical protein RUMHYD_03159 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037740|gb|EEG47986.1| hypothetical protein RUMHYD_03159 [Blautia hydrogenotrophica DSM
           10507]
          Length = 411

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 93/248 (37%), Gaps = 20/248 (8%)

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
                   L+ +   I       ++ ++     +  ++ +     ++  H    +     
Sbjct: 136 RLAGLGSSLSRLGGGIGTRGPGEKKLEMDRRLIRTRISQLKKELEEVVRHRELVRDQRQR 195

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTA 275
            N     ++G+S+AGKSS  N L    + +  ++  +T D  T  L L G   + ++DT 
Sbjct: 196 MNQKIAALVGYSSAGKSSTMNYLTGASI-LEDEMLFSTLDTTTRVLQLSGKQEILLTDTV 254

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFI 323
           G          E  K T  EV  AD+I+ + + ++ +  +               +   I
Sbjct: 255 GFIRKLPHQLIEAFKSTLEEVCYADIIIHVVDASNPQRETQMHVVYETLRQLKVSDKPVI 314

Query: 324 FIGTKSDLYST------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            +  K D          +  EY  L S+ TGEG+EEL   ++ IL +    +    P  K
Sbjct: 315 TLFNKQDKLEEKQKFRDFRAEYSILSSTKTGEGMEELKAALEEILRSGQIYIERLYPYQK 374

Query: 378 RHLYHLSQ 385
             +  L +
Sbjct: 375 AGILQLIR 382


>gi|47565556|ref|ZP_00236597.1| GTP-binding protein hflX [Bacillus cereus G9241]
 gi|47557546|gb|EAL15873.1| GTP-binding protein hflX [Bacillus cereus G9241]
          Length = 419

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 110/294 (37%), Gaps = 26/294 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYVSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           +EEL+  I+S +  ++ K    IP  +  +        ++   S   +   L+I
Sbjct: 351 IEELVKMIRSHIYKEYTKCEMLIPYDQGQVVSYFNNHAHVLSTSYENEGTKLEI 404


>gi|330814141|ref|YP_004358380.1| GTP-binding protein Era [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487236|gb|AEA81641.1| GTP-binding protein Era [Candidatus Pelagibacter sp. IMCC9063]
          Length = 275

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 23/171 (13%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I ++G+ + I G +N+GKS+L N++ +K V+IV+    TT   L    +     +   DT
Sbjct: 2   IKKSGF-VAISGPTNSGKSTLLNSIFEKKVSIVSHKVQTTLKSLDAVKNYGDTQIVFIDT 60

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-------ISFPKNIDFIFIGT 327
            G  +  +      IK     +E +DL+L++ +I S+ E       I          I  
Sbjct: 61  PGYYQKKNDANF--IKDVLSSIERSDLLLIILDITSRFEYLEQIEKIVKNYKKKKFLIIN 118

Query: 328 KSDLYST-----------YTEEYD--HLISSFTGEGLEELINKIKSILSNK 365
           K DL +            + + +D    +S+   + +++L+N +   L  +
Sbjct: 119 KIDLVNNEYVLEKLSTISFIKNFDEVFYLSALKNKNIKKLLNHVSKSLPTQ 169


>gi|300818566|ref|ZP_07098774.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|300528738|gb|EFK49800.1| conserved hypothetical protein [Escherichia coli MS 107-1]
          Length = 290

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K +++        P 
Sbjct: 137 RHILQCGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREKTEAVFRLFRPAHPV 195

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 196 -VAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|218258196|ref|ZP_03474598.1| hypothetical protein PRABACTJOHN_00252 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225691|gb|EEC98341.1| hypothetical protein PRABACTJOHN_00252 [Parabacteroides johnsonii
           DSM 18315]
          Length = 403

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 94/233 (40%), Gaps = 20/233 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + +L+ I  LK D+     Q  +    R    ++ ++G++N GKS+L N L+K DV  
Sbjct: 169 DKRIILDKISKLKRDLVEIDKQKSVQRKNRGKMVRVALVGYTNVGKSTLMNQLSKSDV-F 227

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + ++     +SDT G          E  K T  EV  ADL++ + 
Sbjct: 228 AENKLFATLDTTVRKVIVDNLPFLLSDTVGFIRKLPTELVESFKSTLDEVREADLLVHVV 287

Query: 307 EINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           +I+                EI   +    I +  K D ++   ++ D  ++  T E ++ 
Sbjct: 288 DISHPTFEEQIEVVNRTLSEIDKAEK-PMIMVFNKIDAFTFVPKDED-DLTPRTRENID- 344

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DII 405
            ++++K    NK +     I + +R      + + Y  +  ++       D +
Sbjct: 345 -LDELKRTWMNKMQDNCIFISAKERTNIDALKALLYERVKQIHITRFPYNDFL 396


>gi|332976933|gb|EGK13752.1| GTP-binding protein HflX [Desmospora sp. 8437]
          Length = 408

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 95/257 (36%), Gaps = 19/257 (7%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + T E   ++ +  +   L  L G+  + ++ +   I       ++ +      +  +
Sbjct: 102 MRARTKEGSLQVELAQLEYSLPRLIGRGKE-MSRLGGGIGTRGPGEKKLETDRRHIRRRI 160

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
            D+      +  H    +      +  ++ ++G++NAGKS+L N L    V    D    
Sbjct: 161 RDLKRELEGVRKHRRLHQNRRRKMDMIQVALVGYTNAGKSTLLNRLTGAGVME-EDRLFA 219

Query: 254 TRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  +  LDL  G  V ++DT G             + T  +V  ADL+L + + +  +
Sbjct: 220 TLDPTSRFLDLPSGEKVLLTDTVGFIRNLPHHLVAAFRSTLEQVGEADLLLHVVDASHPE 279

Query: 313 EISFPK------------NIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEGLEELINK 357
            +   K             +  + +  K+D         E     IS++  +  E L  K
Sbjct: 280 AMEQMKSVERVLEDLGAGEVPVLTVFNKADREGGAILSAEGETIRISAYDADDRERLKEK 339

Query: 358 IKSILSNKFKKLPFSIP 374
           I  +L+         IP
Sbjct: 340 IDRVLNAAQIHGSAEIP 356


>gi|218246171|ref|YP_002371542.1| small GTP-binding protein [Cyanothece sp. PCC 8801]
 gi|218166649|gb|ACK65386.1| small GTP-binding protein [Cyanothece sp. PCC 8801]
          Length = 531

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 112/255 (43%), Gaps = 24/255 (9%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDI--SSHISQGKLGE--IIRNGYKIVILGHSNAGKSS 234
            ++ +    + K V   +  +++ +   + +++ +  E  + R   K+V+ G  +AGK+S
Sbjct: 86  EQKTEAAQETLKAVRRQVQQIQDKVTQKALLNRSQEIEASLTRGELKVVVFGTGSAGKTS 145

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKR- 291
           L NAL  + V  V    GTT+   T  L L G    + I+DT GI E       EG +R 
Sbjct: 146 LINALIGEMVGNVEATMGTTQIGETYRLKLRGVSQEILITDTPGILEAG----VEGTQRE 201

Query: 292 --TFLEVENADLILLLKEINSKK------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
                    ADL+L + + + ++      +I        + I  K DL   YTE+   LI
Sbjct: 202 KLARQLATEADLLLFVVDNDLRQSEYDPLQILAKIGKRSLLIFNKIDL---YTEDEITLI 258

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
                E +++LI +   I+       PF      + +      +  ++  ++  +  G D
Sbjct: 259 KQQLQERVKDLIGE-SDIILIAANPQPFE-VETGKMIKAEPDIIPLIKRLAVVLRAEGED 316

Query: 404 IIAENLRLASVSLGK 418
           +IA+N+ L S  LG+
Sbjct: 317 LIADNILLQSQRLGE 331


>gi|42780985|ref|NP_978232.1| GTP-binding protein [Bacillus cereus ATCC 10987]
 gi|42736906|gb|AAS40840.1| GTP-binding protein [Bacillus cereus ATCC 10987]
          Length = 401

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 105/274 (38%), Gaps = 26/274 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           +EEL+  I+S +  ++ K    IP  +  +  +S
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDQGQVVLIS 384


>gi|325954467|ref|YP_004238127.1| GTP-binding proten HflX [Weeksella virosa DSM 16922]
 gi|323437085|gb|ADX67549.1| GTP-binding proten HflX [Weeksella virosa DSM 16922]
          Length = 411

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 91/235 (38%), Gaps = 20/235 (8%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L  +    I +    +    G   ++ ++G++N GKS+L N L+
Sbjct: 161 ETEIETDRRIIRDRITLLREKLKSIDKQMATQRTNRGAMVRVALVGYTNVGKSTLMNVLS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K DV    D    T D     + +      ++DT G          E  K T  EV  AD
Sbjct: 221 KSDV-FAEDKLFATLDTTVRKVVIGNLPFLLTDTVGFIRKLPTQLVESFKSTLDEVREAD 279

Query: 301 LILLLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTY-TEEYDHLISSFT 347
           L++ + +I+               +    K+   + +  K D +S     E D  +  F 
Sbjct: 280 LLIHVVDISHASFEDHINSVNKILDEINSKDKPTVMVFNKIDNFSYIEKPEDDLTVMHFE 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
              LE      K+ ++       F   + K ++  L +T+ Y E+  L+ +    
Sbjct: 340 NYSLEHWK---KTWMAKTSYPTLFISATEKENIEELRKTI-YEEVKKLHIQRFPY 390


>gi|259416757|ref|ZP_05740677.1| GTP-binding protein HflX [Silicibacter sp. TrichCH4B]
 gi|259348196|gb|EEW59973.1| GTP-binding protein HflX [Silicibacter sp. TrichCH4B]
          Length = 423

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 28/206 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   ++ L+  +   +    L    R       + ++G++NAGKS+LFN L   
Sbjct: 166 EADRRAIDEQLVRLRRQLDKVVKTRTLHRAARAKIPYPIVALVGYTNAGKSTLFNRLTGA 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV    D+   T D     ++L +G  V +SDT G             + T  EV  AD+
Sbjct: 226 DVM-AKDMLFATLDPTMRRVELPDGPEVILSDTVGFISDLPTELVASFRATLEEVLAADV 284

Query: 302 ILLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYT----------EE 338
           IL +++I+                 +   ++   I +  K D  S              E
Sbjct: 285 ILHVRDISHSDTENQAEDVEQILNSLGVDEDRALIEVWNKIDQLSEEDADACRQRAERSE 344

Query: 339 YDHLISSFTGEGLEELINKIKSILSN 364
             + IS+ TGEGL EL+N I   L  
Sbjct: 345 ELYAISAITGEGLPELLNDIALKLQG 370


>gi|145295845|ref|YP_001138666.1| GTPase [Corynebacterium glutamicum R]
 gi|140845765|dbj|BAF54764.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 509

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 105/275 (38%), Gaps = 36/275 (13%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQW-----IDKLTHIRSFIEADLDFSEEEDVQNFSS 189
            +++     ++++  M   L S    W             S     L    E  ++    
Sbjct: 191 HAKSREGKAQVALAQME-YLISRVRGWGGNLSRQAGGRAGSNGGVGLRGPGETKIE-ADR 248

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAI 246
           + + +D+  L+ ++S   +   +    R      +I I G++NAGKSSL NA+    V +
Sbjct: 249 RRLRSDMARLRRELSGLDTSRSIKRAQRAASLVPQIAIAGYTNAGKSSLINAMTGAGV-L 307

Query: 247 VTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           V +    T D  T   +L +G  V  +DT G          E  K T  EV  ADL+L +
Sbjct: 308 VENALFATLDPTTRKAELADGRHVVFTDTVGFVRHLPTSLVEAFKSTLEEVVEADLMLHV 367

Query: 306 KEINSKKEISFPKNIDF----------------IFIGTKSDLYSTYTE-------EYDHL 342
            + +    +     ++                 I +  K D     T        +    
Sbjct: 368 VDGSDPFPLKQIDAVNTVISDIVRSTGAVPPPEIIVVNKIDQADPLTLAELRHAVDDVVF 427

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +S+ TGEG++EL  +I+  L+++   L   IP  +
Sbjct: 428 VSALTGEGIKELEARIELFLNSRDAHLLLKIPFTR 462


>gi|325842918|ref|ZP_08167791.1| GTP-binding protein HflX [Turicibacter sp. HGF1]
 gi|325489520|gb|EGC91887.1| GTP-binding protein HflX [Turicibacter sp. HGF1]
          Length = 424

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 106/272 (38%), Gaps = 31/272 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E Q ++ +  +   +  L G     L+     I +       E       + +  
Sbjct: 112 RAKTREAQLQVEVAQLRYMMPRLIG-LNASLSRQAGGIGSK---GPGEKKLELDRRRIEE 167

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAK------KDVA 245
            +  L  ++ S +   +    +R       + ++G++NAGKS+  NAL K        V 
Sbjct: 168 QVHRLNKELDSLVLARQNQRKLRKRNATPVVALVGYTNAGKSTTMNALLKISNSQLDKVV 227

Query: 246 IVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
              ++   T +  T  + L       ++DT G          +  + T  EV  ADL+L 
Sbjct: 228 FEKNMLFATLETSTRQIQLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEEVTEADLLLH 287

Query: 305 LKEINSKK---EISFPKN---------IDFIFIGTKSDL----YSTYTEEYDHLISSFTG 348
           + +++  +   +I                 +++  KSDL     +  T++    IS+   
Sbjct: 288 VVDLSHPEFETQIEITNKVLAELGVSETPMVYVYNKSDLAPDEIAPPTDQDSVRISAKNL 347

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           E ++ELIN IK  +   + K  F IP  + +L
Sbjct: 348 ENIDELINMIKHHIFQNYVKATFLIPYDRGNL 379


>gi|323701163|ref|ZP_08112838.1| small GTP-binding protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533765|gb|EGB23629.1| small GTP-binding protein [Desulfotomaculum nigrificans DSM 574]
          Length = 188

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 19/158 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+V++G+ N GKS LFN L    V  V++ PGTT +V      +     ++ DT G+   
Sbjct: 26  KVVLVGNPNVGKSVLFNRLTGAYVT-VSNYPGTTVEVSRGKGKIGDEYFEVVDTPGMYSL 84

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYST 334
             I E+E + R  L  E+ + ++ + +  +   +           +  + +    D    
Sbjct: 85  LPITEEEAVSRRLLLNEHPEAVVHVVDAKNLPRMLPLTLQLIEAGLPVVLVLNMMDEAKK 144

Query: 335 YTEEYDHLI------------SSFTGEGLEELINKIKS 360
              + +                   GEG+E+L   IK 
Sbjct: 145 LGLDVNVSSLQKRLGVPVVSAVFVKGEGVEQLKRVIKE 182


>gi|260855974|ref|YP_003229865.1| putative GTP-binding protein [Escherichia coli O26:H11 str. 11368]
 gi|257754623|dbj|BAI26125.1| predicted GTP-binding protein [Escherichia coli O26:H11 str. 11368]
 gi|323155669|gb|EFZ41841.1| hypothetical protein ECEPECA14_2445 [Escherichia coli EPECa14]
          Length = 290

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L +I R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKITRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILQCGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|227548795|ref|ZP_03978844.1| GTP-binding protein Era [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079125|gb|EEI17088.1| GTP-binding protein Era [Corynebacterium lipophiloflavum DSM 44291]
          Length = 307

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 86/219 (39%), Gaps = 25/219 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI+ D P TTR  +   ++ E   V + D
Sbjct: 10  EGFRSGF-VSFVGRPNTGKSTLTNALVGEKIAIMADQPETTRHPIRGIINREDAQVIVVD 68

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPK-NIDFI 323
           T G+     ++ +           + D+I      + K         ++I   K N   +
Sbjct: 69  TPGVHRPRTLLGERLNDVVRDTFADVDVIGFTVPADEKIGPGDRFILEQIRKTKPNAPIV 128

Query: 324 FIGTKSD-------------LYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFKKL 369
            I TK D             L+    E+ +   +S+     L+ L++ +   L    +  
Sbjct: 129 GIVTKLDKASKDTVGERLVELHELLGEDCEVVPVSAIEAVQLDVLLDILVEHLPEGPQFY 188

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           P    + +     +S+ +R   +  L E+      +  +
Sbjct: 189 PEGHVTDEDTETQISELIREEALQGLREELPHSVAVQID 227


>gi|222528817|ref|YP_002572699.1| GTP-binding proten HflX [Caldicellulosiruptor bescii DSM 6725]
 gi|222455664|gb|ACM59926.1| GTP-binding proten HflX [Caldicellulosiruptor bescii DSM 6725]
          Length = 509

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 82/215 (38%), Gaps = 18/215 (8%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L+ +   I        + ++     +  + +I      +  +    +   +      + I
Sbjct: 296 LSRLGGGIGTRGPGETKLEIDRRHIQRRIEEIKKELEKVKKNREVQRKSRVENQVPVVSI 355

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G++NAGKS+L N ++K DV +V D    T D  T  +  +G    ++DT G        
Sbjct: 356 IGYTNAGKSTLMNRISKADV-LVEDKLFATLDTTTRRVYHKGKEFLLTDTVGFIRNLPHH 414

Query: 285 EKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDL- 331
             E    T  EV+ ++LIL + +++        K            NI  I +  K D  
Sbjct: 415 LVEAFSSTLEEVKYSNLILNVVDVSDPFYYDHIKVSEDLLKLLGAENIPLIRVYNKIDKV 474

Query: 332 ----YSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                  +       IS+  G G++ L++ I   +
Sbjct: 475 DLSSVDVFDNVPHVFISAQDGRGIDTLLDMIIERI 509


>gi|163802746|ref|ZP_02196636.1| GTP-binding protein HflX [Vibrio sp. AND4]
 gi|159173453|gb|EDP58275.1| GTP-binding protein HflX [Vibrio sp. AND4]
          Length = 429

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 106/304 (34%), Gaps = 34/304 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + +  
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRE 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   +     Q + G   RN      + ++G++NAGKS+LFN + +  V    D  
Sbjct: 170 RIKTILRRLEKVAKQREQGRRARNRAEIPTVSLVGYTNAGKSTLFNRITQAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     ++L       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKIELADVGPAILADTVGFIRHLPHDLVAAFKATLKETQEADILLHVVDASD 288

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGE 349
           ++            E      +  + +  K D         +           +S+  G 
Sbjct: 289 ERFRENIQAVHEVLEEIDADEVPTLVVMNKIDNLEEQKPRIERDEEGVPRAVWVSAMDGL 348

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           G+E L + +   L+++  +    IP   +    L  T   ++     E D   D++  ++
Sbjct: 349 GIELLFDALTERLASQMVEYQLRIPPQYQGR--LRSTFFDMKCIQREEYDQEGDLL-IDI 405

Query: 410 RLAS 413
           R+  
Sbjct: 406 RMQQ 409


>gi|118467125|ref|YP_881248.1| GTP-binding protein Era [Mycobacterium avium 104]
 gi|189037653|sp|A0QEB0|ERA_MYCA1 RecName: Full=GTPase Era
 gi|118168412|gb|ABK69309.1| GTP-binding protein Era [Mycobacterium avium 104]
          Length = 299

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 86/239 (35%), Gaps = 34/239 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    VAI +  P TTR  +   +  + + + + DT G
Sbjct: 5   RSGF-VCLVGRPNTGKSTLTNALVGTKVAITSMRPQTTRHTIRGIVHRDDFQIILVDTPG 63

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           +     ++ K             D+I L    +           ++  +       + I 
Sbjct: 64  LHRPRTLLGKRLNDLVRDTYAEVDVIGLCIPADEAIGPGDRWIVEQIRATAPKTTLVAIV 123

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D                          +S+ TG  ++ +I+ + + L       P  
Sbjct: 124 TKIDKVPKDRVAAQLVAVSELVGDSAEIVPVSAVTGAQVDIVIDVLAAALPPGPAYYPDG 183

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
             + +     +++ +R   +  + + +    +           + ++    D + L+D+
Sbjct: 184 ELTDEPEEVLMAELIREAALEGVRD-ELPHSLAVV--------IDEVNPREDRDDLIDV 233


>gi|172057117|ref|YP_001813577.1| GTP-binding proten HflX [Exiguobacterium sibiricum 255-15]
 gi|171989638|gb|ACB60560.1| GTP-binding proten HflX [Exiguobacterium sibiricum 255-15]
          Length = 413

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 17/205 (8%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + +   +  +K  +    +H ++ +        ++I ++G++NAGKS++FN L   D 
Sbjct: 164 DRRHIRRRVDEIKKQLETSVAHRARYRERRKENQTFQIALVGYTNAGKSTIFNRLTNADT 223

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               ++   T D LT  LDL EG  + ++DT G  +          + T  EV  ADLIL
Sbjct: 224 YEKNELFA-TLDPLTRQLDLPEGGQILLTDTVGFIQDLPTKLIAAFRSTLEEVLEADLIL 282

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            + + +S+  ++  +            +I  + +  K D  +        LIS+     +
Sbjct: 283 HVIDASSEHYLNQMQTTNDVLDELGAGDIPQLEVFNKKDQLTHLFSGGKLLISALDPADI 342

Query: 352 EELINKIKSILSNKFKKLPFSIPSH 376
           + L  +I+  +S+  + L   IP H
Sbjct: 343 DRLTVEIEKAISDILEYLEIRIPVH 367


>gi|326333977|ref|ZP_08200207.1| GTP-binding protein Era [Nocardioidaceae bacterium Broad-1]
 gi|325948256|gb|EGD40366.1| GTP-binding protein Era [Nocardioidaceae bacterium Broad-1]
          Length = 315

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 13/150 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  NAGKS+L NAL    VAI +D P TTR V+   +      + + DT G
Sbjct: 14  RSGF-VSFVGRPNAGKSTLTNALVGTKVAITSDKPQTTRTVVKGIVHRPDGQLILVDTPG 72

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFIG 326
           I     ++ +             D++ +    N K                K I  + + 
Sbjct: 73  IHRPRTLLGERLNDLVEATWTEVDVVAICFPCNEKIGPGDRRIAENANKLKKGIKRVAVA 132

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           TK+DL +   E+    + S    G +  I 
Sbjct: 133 TKTDLAT--PEQIGEHLMSIQALGQDLGIE 160


>gi|296125394|ref|YP_003632646.1| GTP-binding proten HflX [Brachyspira murdochii DSM 12563]
 gi|296017210|gb|ADG70447.1| GTP-binding proten HflX [Brachyspira murdochii DSM 12563]
          Length = 371

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 78/201 (38%), Gaps = 26/201 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
            +  +     I  LK  +S        G   R N +++ I+G++NAGKS+LFN L K+ V
Sbjct: 168 EYDRRRARERIHKLKTQLSKVEKSASTGRKSRGNAFRVAIVGYTNAGKSTLFNLLCKESV 227

Query: 245 AIVTDIPGTTRDVLTIDLDLEG---YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
             V D    T D  T  L L         ISDT G  +          K T  EV  ADL
Sbjct: 228 -YVEDKLFATLDTHTRKLYLGDDTPVEAIISDTVGFIDRLPHTLVASFKSTLSEVVEADL 286

Query: 302 ILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTE-------EYDH 341
           +L L + + +             KEI    +I  I +  K D      +       +   
Sbjct: 287 LLHLVDASDENINNKLIQVESIIKEID-ASHIKRIVVFNKIDNIDEVQKNKISTSYDDSI 345

Query: 342 LISSFTGEGLEELINKIKSIL 362
           LIS+     +E L  KI   +
Sbjct: 346 LISAKNNINIEMLRKKILDYI 366


>gi|296114949|ref|ZP_06833595.1| GTP-binding protein hflX [Gluconacetobacter hansenii ATCC 23769]
 gi|295978507|gb|EFG85239.1| GTP-binding protein hflX [Gluconacetobacter hansenii ATCC 23769]
          Length = 436

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 95/258 (36%), Gaps = 29/258 (11%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ +  +  + S L   W   L   R          E +       + + + 
Sbjct: 122 AATKEGSLQVELAHLEYQRSRLVRTWTH-LERQRGGFGFLGGPGETQI--EADRRMIGDR 178

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           I+ LK ++        L    R       + ++G++NAGKS+LFNAL    V     +  
Sbjct: 179 IVRLKRELEQVRRTRGLHRQARRRVPFPVVALVGYTNAGKSTLFNALTGASVYAQDQLFA 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T    +       G  + +SDT G             + T  EV  AD+IL +++ +  +
Sbjct: 239 TLDPTMRGIRLPSGRQIILSDTVGFISDLPTELIAAFRATLEEVAEADIILHVRDASHPE 298

Query: 313 EISFPKNI-------------------DFIFIGTKSDLY----STYTEEYDHLISSFTGE 349
             +   ++                     I +  K+DL     +        +IS+ TG+
Sbjct: 299 TSAQRADVVEVLEGMAHSGTIEPDWQSRVIEVLNKADLMGGRDAVGARPGAIVISAITGD 358

Query: 350 GLEELINKIKSILSNKFK 367
           GL +L+  I   L++  +
Sbjct: 359 GLPDLLAAIDERLTHAME 376


>gi|53804478|ref|YP_113919.1| GTP-binding protein Era [Methylococcus capsulatus str. Bath]
 gi|53758239|gb|AAU92530.1| GTP-binding protein Era [Methylococcus capsulatus str. Bath]
          Length = 293

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + ++IV+  P TTR  +          V   DT GI    
Sbjct: 6   VALVGRPNVGKSTLLNHLLGQKLSIVSRRPQTTRHRILGIKTDGRGQVIYVDTPGIHGGA 65

Query: 282 DIVEKEGIKRT-FLEVENADLILLLKE-----INSKKEISFPK--NIDFIFIGTKSD--- 330
                  + RT    +   D+IL L +      + +  ++  K   +  I +  K D   
Sbjct: 66  RRAMNRYLNRTAISSLLGVDVILWLVDRAGWLPDDELVMARIKEAKLPVILVINKVDRIE 125

Query: 331 ----LYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
               L     E            IS+  G  L  L  ++ ++L       P    S +  
Sbjct: 126 GKDTLLPFLAEANATGLFSEIVPISALKGINLAVLEERVLALLPEGEPIYPEDQISDRPE 185

Query: 380 LYHLSQTVR 388
            + +++ +R
Sbjct: 186 RFFVAEIIR 194


>gi|294794217|ref|ZP_06759353.1| GTP-binding protein [Veillonella sp. 3_1_44]
 gi|294454547|gb|EFG22920.1| GTP-binding protein [Veillonella sp. 3_1_44]
          Length = 428

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKS+L N L  + V++V+D+ GTT D ++  +++     V I+DTAG
Sbjct: 8   NRIHIGFFGRCNAGKSTLINMLTGQPVSLVSDVAGTTTDPVSKAMEILPLGPVVITDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           I +T ++      ++T   V+  +L + +   + + 
Sbjct: 68  IDDTTELGTLRM-EKTEEVVKKINLAVYVLRTDEEP 102


>gi|296139514|ref|YP_003646757.1| GTP-binding proten HflX [Tsukamurella paurometabola DSM 20162]
 gi|296027648|gb|ADG78418.1| GTP-binding proten HflX [Tsukamurella paurometabola DSM 20162]
          Length = 479

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 96/242 (39%), Gaps = 35/242 (14%)

Query: 188 SSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDV 244
             + +   +  L+ +I         K G   R+G   + I G++NAGKSSL NAL    V
Sbjct: 215 DRRRIRERMAKLRREIKGMKQARDTKRGARRRSGVPAVAIAGYTNAGKSSLLNALTDAGV 274

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V +    T D  T    L +G  V  +DT G          E  + T  EV +ADL++
Sbjct: 275 -LVQNALFATLDPTTRHGTLTDGRDVVFTDTVGFVRHLPTQLVEAFRSTLEEVVDADLLV 333

Query: 304 LLKEINS-------------------KKEISFPKNIDFIFIGTKSDLYS-------TYTE 337
            + + +                    ++E + P+    + +  K+D              
Sbjct: 334 HVVDGSDPMPQRQIDAVRHVLREVAGEREAALPRE---LLVINKTDAADPMVLAQLRVAL 390

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
                +S+ T EG++EL+ ++  +++    ++   +P  +  L         + +A+ +E
Sbjct: 391 PEAVFVSAHTREGIDELMQRMTDLITAGDVEVSALVPYERGDLVARIHAEGTI-LATDHE 449

Query: 398 KD 399
            D
Sbjct: 450 AD 451


>gi|149197046|ref|ZP_01874099.1| GTP-binding protein Era [Lentisphaera araneosa HTCC2155]
 gi|149140156|gb|EDM28556.1| GTP-binding protein Era [Lentisphaera araneosa HTCC2155]
          Length = 301

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 22/152 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  NAGKS+  N      +A V+ +P TTR         +   +  SDT GI E+ 
Sbjct: 13  VAIVGRPNAGKSTFVNQALGYKLAAVSRVPHTTRRRWVGIFTDDDAQIIFSDTPGIHESK 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYS 333
           + +++   +     ++  D+ LLL +   +  +                I +  K D  S
Sbjct: 73  NRMDEMMDRTIKRAIDKNDITLLLCDPMREFGMEDEMAAKAAAAGGKPTILVLNKCDKAS 132

Query: 334 TYTEE--------------YDHLISSFTGEGL 351
              +                 H +S+   EG+
Sbjct: 133 AEEKREMESNYSAHFSEKPKIHHMSALNNEGV 164


>gi|146312694|ref|YP_001177768.1| GTP-binding protein Era [Enterobacter sp. 638]
 gi|189037648|sp|A4WDD7|ERA_ENT38 RecName: Full=GTPase Era
 gi|145319570|gb|ABP61717.1| GTP-binding protein Era [Enterobacter sp. 638]
          Length = 301

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNTLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +LI+ + E     +  E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELIIFVVEGTRWTADDEMVLNKLRDGRAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   HL               S+ +G  ++ +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPLSAESGMNVDTIAGIVRKHLPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|301647089|ref|ZP_07246913.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|301074750|gb|EFK89556.1| conserved hypothetical protein [Escherichia coli MS 146-1]
          Length = 290

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 104/247 (42%), Gaps = 29/247 (11%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           IS HI +  L ++ R+     I+G S AGKSSL NAL + +V  V+D+   TR+V    L
Sbjct: 21  ISRHILE-HLRKLTRHEPVPGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFRL 79

Query: 263 DLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK---------K 312
              G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         +
Sbjct: 80  SGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFWR 137

Query: 313 EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
            I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +   
Sbjct: 138 HILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHPV 195

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVE 426
           +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V   
Sbjct: 196 VAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV--- 250

Query: 427 QLLDIIF 433
              D IF
Sbjct: 251 ---DRIF 254


>gi|294651533|ref|ZP_06728842.1| GTP-binding family protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292822556|gb|EFF81450.1| GTP-binding family protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 445

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 63/321 (19%), Positives = 116/321 (36%), Gaps = 41/321 (12%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + T E + ++ +  +    + L   +   L   +  I         E       + + 
Sbjct: 114 LRARTHEGKLQVELAQLKHLSTRLIRGFTGNLEQQKGGIGLR---GPGESQLETDRRLIR 170

Query: 194 NDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             I  LK+ +         G   R       I ++G++NAGKS+LFN LAK DV    D 
Sbjct: 171 VRITQLKDKLIKVQQTRLQGRAARQKAAIPTISLVGYTNAGKSTLFNILAKSDV-YAADQ 229

Query: 251 PGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D     L+ +G   V ++DT G          E  K T  E   A L+L + + +
Sbjct: 230 LFATLDPTLRRLEWDGIGTVVLADTVGFVRNLQHDLVESFKATLEETLEATLLLHVVDSS 289

Query: 310 S---KKEISFPK--------NIDFIFIGTKSDL--------YSTYTEEYDHLISSFTGEG 350
           S    ++I   +        +   + +  K DL        Y          +S+ +G+G
Sbjct: 290 SPNMPEQIEAVESVLKEIGADAPILHVYNKIDLSGDTAKITYKAPELPDRVYLSAHSGQG 349

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI-IAEN- 408
           L+ L   ++  L  + ++    +   K     L   +  L +      D   D+ ++   
Sbjct: 350 LDLLSQAVQQCLMGQLQQFDLVL---KPAYGKLRTQLYTLNVIQSEHYDDEGDLHLSVCI 406

Query: 409 --------LRLASVSLGKITG 421
                   ++ A + L +I G
Sbjct: 407 TPHKLEQLIKQAHLPLDEIVG 427


>gi|194365250|ref|YP_002027860.1| GTP-binding proten HflX [Stenotrophomonas maltophilia R551-3]
 gi|194348054|gb|ACF51177.1| GTP-binding proten HflX [Stenotrophomonas maltophilia R551-3]
          Length = 436

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 90/288 (31%), Gaps = 29/288 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W          I        + +      ++ +  +      +   
Sbjct: 125 LAQLRHLATRLVRGWTHLERQRGGSIGLRGPGETQLETDRRLLQKRVEQLQKRLEKVEVQ 184

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +   +     ++ ++G++NAGKS+LFNA+   + A   D    T D     + + G
Sbjct: 185 RTQMRRARVRSELPRVALVGYTNAGKSTLFNAMTGAE-AYAADQLFATLDPTVRRIAVPG 243

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------- 318
             V ++DT G             + T  E   AD +L + +                   
Sbjct: 244 GNVVLADTVGFVRDLPHDLVAAFRSTLSEAREADFLLHVVDAADPHREERIAQVDEVLTA 303

Query: 319 ----NIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSI 361
               ++  + +  K D        +D               IS+  G+GLE L + +   
Sbjct: 304 VGAGDLPQLLVFNKIDRIEGADVRHDGQDGIPDESRRERVWISARDGQGLELLQSVLGKR 363

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           L  +       +P     L      +  +     +E      ++  +L
Sbjct: 364 LGLQHVTGELRLPPDAGRLRARLHQLEVIRSEQADEDGW---LLQVDL 408


>gi|77410244|ref|ZP_00786704.1| Era-like protein [Streptococcus agalactiae COH1]
 gi|77171148|gb|EAO74557.1| Era-like protein [Streptococcus agalactiae COH1]
          Length = 102

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 43/101 (42%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
            G+  E+      + ILG  N GKS+  N +  + +AI++D   TTR+ +      E   
Sbjct: 2   NGERKEMTFKSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQ 61

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +   DT GI +    +    ++  +  +   + +L +    
Sbjct: 62  IVFIDTPGIHKPKTALGDFMVESAYSTLREVETVLFMGPAR 102


>gi|255327124|ref|ZP_05368199.1| GTP-binding protein Era [Rothia mucilaginosa ATCC 25296]
 gi|255295742|gb|EET75084.1| GTP-binding protein Era [Rothia mucilaginosa ATCC 25296]
          Length = 380

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   ++G  NAGKS+L NA+  + VAI ++ P TTR  +   +  + Y + + DT G
Sbjct: 27  RSGF-ASLVGRPNAGKSTLTNAMVGQKVAITSNRPQTTRHTIRGIVHKDEYQLILVDTPG 85

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           I     ++ +         +   D++      N K          ++    N   + I T
Sbjct: 86  IHRPRTLLGERLNDLVASTLSQVDVLGFCIPANEKIGPGDRYIASQLVASSNKPVVAIVT 145

Query: 328 KSDLYST 334
           K+D  S+
Sbjct: 146 KADTVSS 152


>gi|41408243|ref|NP_961079.1| GTP-binding protein Era [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81831734|sp|Q73Y13|ERA_MYCPA RecName: Full=GTPase Era
 gi|41396598|gb|AAS04462.1| Bex [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 299

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 86/239 (35%), Gaps = 34/239 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    VAI +  P TTR  +   +  E + + + DT G
Sbjct: 5   RSGF-VCLVGRPNTGKSTLTNALVGTKVAITSMRPQTTRHTIRGIVHREDFQIILVDTPG 63

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           +     ++ K             D+I L    +           ++  +       + I 
Sbjct: 64  LHRPRTLLGKRLNDLVRDTYAEVDVIGLCIPADEAIGPGDRWIVEQIRATAPKTTLVAIV 123

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D                          +S+ TG  ++ +I+ + + L       P  
Sbjct: 124 TKIDKVPKDRVAAQLVAVSELVGDSAEIVPVSAVTGAQVDIVIDVLAAALPPGPAYYPDG 183

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
             + +     +++ +R   +  + + +    +           + ++    D + L+D+
Sbjct: 184 ELTDEPEEVLMAELIREAALEGVRD-ELPHSLAVV--------IDEVNPREDRDDLIDV 233


>gi|327438426|dbj|BAK14791.1| GTPase [Solibacillus silvestris StLB046]
          Length = 426

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 105/254 (41%), Gaps = 32/254 (12%)

Query: 186 NFSSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALA-- 240
               +++ + I  +K ++       + +  +  +N   +V I+G++NAGKS++ N L   
Sbjct: 166 ELDRRKIEDQISKIKKELEVVKEQRETQRKQRRKNAVPVVSIVGYTNAGKSTIMNQLLAK 225

Query: 241 --KKDVAIVT--DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLE 295
             + D   V   D+   T +    ++DLE      ++DT G          +  + T  E
Sbjct: 226 AGQDDTKQVFEKDMLFATLETSVRNIDLEDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEE 285

Query: 296 VENADLILLLKEINSKK------------EISFPKNIDFIFIGTKSDLYST---YTEEYD 340
              +DL+L + ++++++            +    +NI  +++  KSDL           +
Sbjct: 286 ARESDLLLHVVDVSNEEYRFMMDVTNETLKAIDVENIPTVYVYNKSDLADVEYPLVSGDN 345

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
             +S+    GLEEL+  I+  +   +      IP ++  +          E A++ E + 
Sbjct: 346 IWLSAKEDVGLEELLQLIRQQIFANYITCQMLIPYNQGGIVSYLN-----EQATVLETEY 400

Query: 401 GLD--IIAENLRLA 412
             +  ++   L+ A
Sbjct: 401 EEEGTLLTLELKEA 414


>gi|302558005|ref|ZP_07310347.1| GTP-binding protein [Streptomyces griseoflavus Tu4000]
 gi|302475623|gb|EFL38716.1| GTP-binding protein [Streptomyces griseoflavus Tu4000]
          Length = 589

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 96/246 (39%), Gaps = 28/246 (11%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS--EEEDVQNFSSKEV 192
            +++     ++++  M   +      W   L+      +     +    E       + +
Sbjct: 186 HAKSREGKAQVALAQMQ-YMLPRLRGWGQSLSRQMGGGKGGGLATRGPGETKIETDRRRI 244

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTD 249
              +  ++ +I+   +  ++    R  +K+    I G++NAGKSSL N L    V +V +
Sbjct: 245 REKMAKMRREIAEMKTGREIKRQERRRHKVPSVAIAGYTNAGKSSLLNRLTGAGV-LVEN 303

Query: 250 IPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D      +   G L  ++DT G          E  + T  EV +ADLIL + + 
Sbjct: 304 ALFATLDPTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDADLILHVVDG 363

Query: 309 NS---KKEISFPK---------NIDFIFIGTKSDLYSTYT-------EEYDHLISSFTGE 349
           +    +++++  +          +  I +  K+D     T       E+    +S+ TG 
Sbjct: 364 SHPVPEEQLAAVREVIRDVGATGVPEIVVINKADAADPLTLQRLLRVEKRSIAVSARTGR 423

Query: 350 GLEELI 355
           G+ EL+
Sbjct: 424 GMAELL 429


>gi|298243292|ref|ZP_06967099.1| GTP-binding proten HflX [Ktedonobacter racemifer DSM 44963]
 gi|297556346|gb|EFH90210.1| GTP-binding proten HflX [Ktedonobacter racemifer DSM 44963]
          Length = 451

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 98/292 (33%), Gaps = 26/292 (8%)

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIE 173
            R  E   +D      +     ++T   R    +  +  +L  L  QW   L+  R   +
Sbjct: 111 ERKLEVQVLDRTALILIIFGQRAQTREGRLQVELAQIEYDLPRLARQWSH-LSRQRGGTQ 169

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
              +  ++ +V     +     +      + S     +          + ++G++NAGKS
Sbjct: 170 QRGEGEKQIEVDRRLLRRQKEQLEEELELVRSQRQLHRDRRKYAGAPVVALVGYTNAGKS 229

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRT 292
           +L N L+     +  D    T D  T    +E G    ++DT G  +          + T
Sbjct: 230 TLLNRLSGAQK-LAEDKLFATLDPTTRRARIEGGQEFLLTDTVGFVQRLPHTLVAAFRAT 288

Query: 293 FLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTKSD---------- 330
             EV  ADL++ + + +               E      +  +    KSD          
Sbjct: 289 LEEVNAADLLVHVVDSSHPHVNHQILAVEEVLEEIGAGGMPIVIALNKSDNLEPGTTLPP 348

Query: 331 LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           L           +S+  G G+ +L+  I   L ++F  L   IP  +  L  
Sbjct: 349 LEGIAATLPQVQVSALKGTGISDLLRCISQALVSQFVSLDVLIPYDRGDLVA 400


>gi|296393922|ref|YP_003658806.1| GTP-binding protein Era [Segniliparus rotundus DSM 44985]
 gi|296181069|gb|ADG97975.1| GTP-binding protein Era [Segniliparus rotundus DSM 44985]
          Length = 321

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +   G  N GKSSL NAL  ++V I +  P TTR  +   ++   + + I DT G
Sbjct: 30  RSGF-VCFAGRPNVGKSSLINALVGEEVMITSAHPQTTRRAVRAIMNAPDHQIVIVDTPG 88

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           +      + +             D++      +  
Sbjct: 89  VHRPRTALSERLNDTAAQAFAEVDVVGFCVPADED 123


>gi|300858660|ref|YP_003783643.1| GTPase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686114|gb|ADK29036.1| GTPase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206368|gb|ADL10710.1| Putative GTP-binding protein hflX [Corynebacterium
           pseudotuberculosis C231]
 gi|302330924|gb|ADL21118.1| Putative GTP-binding protein hflX [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276610|gb|ADO26509.1| Putative GTP-binding protein hflX [Corynebacterium
           pseudotuberculosis I19]
          Length = 546

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 94/255 (36%), Gaps = 34/255 (13%)

Query: 186 NFSSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + + +D+  L+ +I+      + K  +   +   +I I G++NAGKSSL NAL   
Sbjct: 284 EADRRRLRSDMAKLRKEIAGMKTAREVKRSQRRESTIPQIAIAGYTNAGKSSLINALTDA 343

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +V D    T D  T   +L +G  V  +DT G          E  + T  EV  ADL
Sbjct: 344 GV-LVEDALFATLDPTTRRAELADGRSVVFTDTVGFVRHLPTQLVEAFRSTLEEVVGADL 402

Query: 302 ILLLKEINSKKEISFPK----------------NIDFIFIGTKSDLYS-------TYTEE 338
           +L + + +    +   K                    I +  K D           +  +
Sbjct: 403 VLHVVDGSDPFPLEQIKAVNGVISDIVRELKVEAPPEIIVVNKIDQADPLVLAELRHALD 462

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ------TVRYLEM 392
               +S+  G+G+ EL  +I+  L+     +   IP  +  +           +  Y   
Sbjct: 463 DVVFVSAQEGDGIPELEARIELFLNTLDAHVHLLIPFTRGDIVSRLHKFGTVLSEEYHAE 522

Query: 393 ASLNEKDCGLDIIAE 407
            +L +      + AE
Sbjct: 523 GTLIDVRLPHSLAAE 537


>gi|218692698|ref|YP_002400910.1| hypothetical protein ECED1_5176 [Escherichia coli ED1a]
 gi|218430262|emb|CAR11129.1| conserved hypothetical protein with GTPase domain [Escherichia coli
           ED1a]
          Length = 303

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 113/273 (41%), Gaps = 30/273 (10%)

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+    +    + E +   L  L   +S HI +  L ++ R+   I I+G S AGKSSL 
Sbjct: 8   FTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLC 66

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLE 295
           NAL + ++  V+D+   TR+V    L   GY + I+D  G+ E+ D   E E + R    
Sbjct: 67  NALFQGEITPVSDVHAGTREVQRFRLSGHGYSMVITDLPGVGESRDRDAEYEALYRDI-- 124

Query: 296 VENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           +   DL+L L + + +         + I    +   +F+ T++D  +    E+D      
Sbjct: 125 LPELDLVLWLIKADDRALSVDEYFWRHILQCGHQQVLFVVTQAD-KTEPCHEWDMAGIQP 183

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402
           +    + +  K    +   F+ +   +    R  + L   V  L  A  +     L    
Sbjct: 184 SPAQAQNIREK-TEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRL 242

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
             ++  E++R  +    + TG V      D IF
Sbjct: 243 QDELRTESVRAQARE--QFTGAV------DRIF 267


>gi|62390780|ref|YP_226182.1| GTPase [Corynebacterium glutamicum ATCC 13032]
 gi|41326118|emb|CAF20281.1| GTPase [Corynebacterium glutamicum ATCC 13032]
          Length = 509

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 105/275 (38%), Gaps = 36/275 (13%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQW-----IDKLTHIRSFIEADLDFSEEEDVQNFSS 189
            +++     ++++  M   L S    W             S     L    E  ++    
Sbjct: 191 HAKSREGKAQVALAQME-YLISRVRGWGGNLSRQAGGRAGSNGGVGLRGPGETKIE-ADR 248

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAI 246
           + + +D+  L+ ++S   +   +    R      +I I G++NAGKSSL NA+    V +
Sbjct: 249 RRLRSDMARLRRELSGLDTSRSIKRAQRAASLVPQIAIAGYTNAGKSSLINAMTGAGV-L 307

Query: 247 VTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           V +    T D  T   +L +G  V  +DT G          E  K T  EV  ADL+L +
Sbjct: 308 VENALFATLDPTTRKAELADGRHVVFTDTVGFVRHLPTSLVEAFKSTLEEVVEADLMLHV 367

Query: 306 KEINSKKEISFPKNIDF----------------IFIGTKSDLYSTYTE-------EYDHL 342
            + +    +     ++                 I +  K D     T        +    
Sbjct: 368 VDGSDPFPLKQIDAVNTVISDIVRSTGAVPPPEIIVVNKIDQADPLTLAELRHAVDDVVF 427

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +S+ TGEG++EL  +I+  L+++   L   IP  +
Sbjct: 428 VSALTGEGIKELEARIELFLNSRDAHLLLKIPFTR 462


>gi|78044680|ref|YP_360380.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996795|gb|ABB15694.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 397

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 6/144 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           I I G  NAGKS+L N +  ++ AI + IPGTT D      +L  Y  V+  DT G+ +T
Sbjct: 12  IGIFGRCNAGKSTLLNNIIGEERAITSSIPGTTTDPNRRAFELLPYGPVEFIDTPGLDDT 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE----ISFPKNIDFIFIGTKSDLYSTYT 336
             + E     +T   +    +++L+     K E        +N     I    ++  + T
Sbjct: 72  SVLGEIRK-AKTREVLATCSVVILVGNTGFKPEDWELQFIEENQTTKKIIGIINMVESKT 130

Query: 337 EEYDHLISSFTGEGLEELINKIKS 360
           E  +     F    +  L++  K+
Sbjct: 131 ENLEAWKKFFEKFNIPYLLHDCKN 154


>gi|306812029|ref|ZP_07446235.1| hypothetical protein ECNC101_08969 [Escherichia coli NC101]
 gi|305854533|gb|EFM54970.1| hypothetical protein ECNC101_08969 [Escherichia coli NC101]
          Length = 290

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQRVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|262203045|ref|YP_003274253.1| GTP-binding protein Era [Gordonia bronchialis DSM 43247]
 gi|262086392|gb|ACY22360.1| GTP-binding protein Era [Gordonia bronchialis DSM 43247]
          Length = 302

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI ++ P TTR  +   ++     + + DT G
Sbjct: 5   RSGF-VCFVGRPNTGKSTLTNALVGEKIAITSNRPQTTRHAIRGIVNRPDAQLILVDTPG 63

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           +     ++ +             D+I +    + K
Sbjct: 64  LHRPRTLLGQRLNDLVQDTFAEVDVIGVCVPADEK 98


>gi|167967449|ref|ZP_02549726.1| GTP-binding protein [Mycobacterium tuberculosis H37Ra]
          Length = 417

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 88/248 (35%), Gaps = 25/248 (10%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q    +  + G   S+  Q   +       +        + +      +E +  +  
Sbjct: 171 SLAQMEYMLPRLRGWGESMSRQAGGRAGGSGGGVGLRGPGETKIETDRRRIRERMAKLRR 230

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
               +       +      +   I I+G++NAGKSSL NAL    V +V D    T +  
Sbjct: 231 DIRAMKQVRDTQRSRRRHSDVPSIAIVGYTNAGKSSLLNALTGAGV-LVQDALFATLEPT 289

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           T   +  +G  V ++DT G          E  + T  EV +ADL++ + + +    ++  
Sbjct: 290 TRRAEFGDGRPVVLTDTVGFVRHLPTQLVEAFRSTLEEVVHADLLVHVVDGSDGHPLAQI 349

Query: 318 KN----------------IDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGLEEL 354
                                + +  K D+ S        +       +S+ TG+G++ L
Sbjct: 350 DAVRQVISEVIADHDGDPPPELLVVNKVDVASDLMLAKLRHGLPGAVFVSARTGDGIDAL 409

Query: 355 INKIKSIL 362
             ++  ++
Sbjct: 410 RRRMAELV 417


>gi|302542060|ref|ZP_07294402.1| GTP-binding protein HflX [Streptomyces hygroscopicus ATCC 53653]
 gi|302459678|gb|EFL22771.1| GTP-binding protein HflX [Streptomyces himastatinicus ATCC 53653]
          Length = 500

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 106/301 (35%), Gaps = 31/301 (10%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q +  +  + G   SL  Q     +       A     E +   +   + +   +  
Sbjct: 193 SLAQMQYMLPRLRGWGQSLSRQMGGGGSGSSGGGMATRGPGETKIETD--RRRIREKMAK 250

Query: 199 LKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           ++ +I+   +   +    R  +K+    I G++NAGKSSL N L    V +   +  T  
Sbjct: 251 MRREIAEMKTGRDIKRQERRRHKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLD 310

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +       G L  ++DT G          E  + T  EV +ADLIL + + +      
Sbjct: 311 PTVRRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDADLILHVVDGSHPAPEE 370

Query: 316 FPK------------NIDFIFIGTKSDLYSTYT-------EEYDHLISSFTGEGLEELIN 356
                          ++  I +  K+D             E     +S+ +G+G++EL+ 
Sbjct: 371 QLAAVREVIRDVGAVDVPEIVVINKADKADPLVLQRLLRMERSAMAVSARSGQGIDELLE 430

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQT------VRYLEMASLNEKDCGLDIIAENLR 410
            I   L     ++   +P  +  L   +          +    +L +     ++ AE LR
Sbjct: 431 VIDHELPRPQVEIEALVPYTEGKLVSRTHADGEVISEEHTPEGTLLKARVHEELAAE-LR 489

Query: 411 L 411
            
Sbjct: 490 R 490


>gi|255019674|ref|ZP_05291753.1| GTP-binding protein Era [Acidithiobacillus caldus ATCC 51756]
 gi|254970897|gb|EET28380.1| GTP-binding protein Era [Acidithiobacillus caldus ATCC 51756]
          Length = 300

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L  + ++I    P TTRD +          +   DT G+    
Sbjct: 13  VALVGRPNVGKSTLLNHLIGQKISITAPRPQTTRDQILGVWTRGQAQILFLDTPGVHRGY 72

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFPKNIDFIF--IGTKSD 330
             + +  ++ T   ++ ADL +L+ E         + + + +        +  K D
Sbjct: 73  RRLNRHLLRATRAALDGADLGILVVEALLWTAADAEALRWLEQRSIPLLAVVNKVD 128


>gi|309797253|ref|ZP_07691648.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|308119128|gb|EFO56390.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|315252264|gb|EFU32232.1| putative GTP-binding protein [Escherichia coli MS 85-1]
          Length = 290

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILQCGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|325830396|ref|ZP_08163853.1| putative ferrous iron transport protein B [Eggerthella sp. HGA1]
 gi|325487863|gb|EGC90301.1| putative ferrous iron transport protein B [Eggerthella sp. HGA1]
          Length = 700

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 11/157 (7%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIV---ILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++    +  ++ + +     G  + +G       +LG  N+GKS+LFNAL       V +
Sbjct: 1   MSAREAVLEELDAAV-SAPSGAAVVSGAPTCSVALLGQPNSGKSTLFNALTGS-RQRVGN 58

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
            PG T +         G    + D  G        E+E + R ++    AD++ +L + +
Sbjct: 59  WPGKTVEKKEGGFSRGGVDYAVCDLPGTYSLSANSEEEVVTRDYIASGRADVVCVLADAS 118

Query: 310 SKKEISFPK------NIDFIFIGTKSDLYSTYTEEYD 340
             +   +        +   + +    D+     +  D
Sbjct: 119 QLERSLYMLADFAGVDCACMLVLNLMDVAEAQGKRID 155


>gi|328944013|ref|ZP_08241478.1| GTP-binding protein Era [Atopobium vaginae DSM 15829]
 gi|327491982|gb|EGF23756.1| GTP-binding protein Era [Atopobium vaginae DSM 15829]
          Length = 332

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 9/124 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  + GKS+L NA     +AI + +  TTR  +   L  +   + I DT G+ +  
Sbjct: 42  VSLVGRPSVGKSTLLNACYGGKIAITSRVAQTTRRRMRAVLTDDSSQIVIVDTPGLHKPK 101

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
           D + KE  +    E+++ D++  L + + +           I        + + TK+D  
Sbjct: 102 DALGKELNQTALAELKDVDVVAHLIDASQEVGRGDAWVAHHIQQSLAPFKLLVITKADKV 161

Query: 333 STYT 336
              T
Sbjct: 162 DAAT 165


>gi|299538231|ref|ZP_07051516.1| GTP-binding protein [Lysinibacillus fusiformis ZC1]
 gi|298726433|gb|EFI67023.1| GTP-binding protein [Lysinibacillus fusiformis ZC1]
          Length = 428

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 87/215 (40%), Gaps = 25/215 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALA-- 240
               +++ + I  +K D+     Q +     R       + I+G++NAGKS++ N L   
Sbjct: 169 ELDRRKIEDQIAKIKKDLEHVKEQRETQRKQRRKNALPVVSIVGYTNAGKSTIMNQLLTQ 228

Query: 241 --KKDVAIVT--DIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLE 295
             +++   V   D+   T +     ++L       ++DT G          +  + T  E
Sbjct: 229 IGQEEHKQVFEKDMLFATLETSVRQIELPDRKTFLLTDTVGFVSKLPHHLVKAFRSTLEE 288

Query: 296 VENADLILLLKEINSKKE------------ISFPKNIDFIFIGTKSDLYST---YTEEYD 340
             +ADL+L + ++++ +                 ++I  I++  K+D+           +
Sbjct: 289 ARDADLLLHVVDVSNTEHGFMMDVTNETLKAVGVEDIPTIYVYNKADIVDVPYPVVSGDN 348

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
             IS+  G GLEEL+  I+  + + +      IP 
Sbjct: 349 IWISAKQGVGLEELVQLIRQHIFSHYVTCDMLIPY 383


>gi|224025930|ref|ZP_03644296.1| hypothetical protein BACCOPRO_02676 [Bacteroides coprophilus DSM
           18228]
 gi|224019166|gb|EEF77164.1| hypothetical protein BACCOPRO_02676 [Bacteroides coprophilus DSM
           18228]
          Length = 418

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 18/216 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +LN +  LK  ++  I   K  +    G   ++ ++G++N GKS+L N +AK D
Sbjct: 182 EMDRRIILNRMALLKQRLAD-IDTQKSTQRKNRGRMIRVALVGYTNVGKSTLMNLMAKSD 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + +E     +SDT G          +  K T  EV  ADL++
Sbjct: 241 V-FAENKLFATLDTTVRKVIIENLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLV 299

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            + +I+    +++I                 + +  K D Y TY E+ +  ++  T E +
Sbjct: 300 HVVDISHPDFEEQIQVVDKTITDLGAGGKPTMIVFNKIDAY-TYVEKAEDDLTPKTKENI 358

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
             L   +K+ ++       F    ++ ++  L   +
Sbjct: 359 -TLEELMKTWMAKMNDNCIFISARNRTNIEELRDLL 393


>gi|126736284|ref|ZP_01752026.1| GTP-binding protein HflX [Roseobacter sp. CCS2]
 gi|126714105|gb|EBA10974.1| GTP-binding protein HflX [Roseobacter sp. CCS2]
          Length = 412

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 100/265 (37%), Gaps = 31/265 (11%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   ++ M  +S + + L   W   L   R  +       E +       + +   + 
Sbjct: 110 TSEGVLQVEMAALSYQRTRLVRAWTH-LERQRGGLGFVGGPGETQI--EADRRAIDEQLN 166

Query: 198 FLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            L+  ++  +   +L    R       + ++G++NAGKS+LFN L    V    D+   T
Sbjct: 167 RLRKQLAKVVKTRELHRASRAKVPFPIVALVGYTNAGKSTLFNRLTGAQV-FAKDMLFAT 225

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            D     + L  G  V +SDT G             + T  EV +ADLI+ +++I+    
Sbjct: 226 LDPTMRKIVLPTGDEVIMSDTVGFISDLPTELVAAFRATLEEVLDADLIVHVRDISHPQT 285

Query: 312 -----------KEISFPKNIDFIFIGTKSDLYSTYTEEYD----------HLISSFTGEG 350
                      + +   +    I +  K+DL      +              +S+ TGEG
Sbjct: 286 EEQAEDVHAILQSLGVAEEAPIIEVWNKTDLLEGDARDAVLTQAARTDDLFAVSAITGEG 345

Query: 351 LEELINKIKSILSNKFKKLPFSIPS 375
           ++ L+  I   L +   +   S+P 
Sbjct: 346 MDPLLAAIPDKLKDPRSEEHLSLPF 370


>gi|94987086|ref|YP_595019.1| GTP-binding protein Era [Lawsonia intracellularis PHE/MN1-00]
 gi|94731335|emb|CAJ54698.1| GTPase [Lawsonia intracellularis PHE/MN1-00]
          Length = 324

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 79/214 (36%), Gaps = 33/214 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           +  R G  + ++G  NAGKS+L N    + VAIVT  P TTR+ +   L  +   V   D
Sbjct: 14  KTYRCG-WVALIGPPNAGKSTLTNTFVGQKVAIVTSKPQTTRNKIGGILTQDDMQVIFLD 72

Query: 274 TAGIRETDDIVE----KEGIKRTFLEVENADLILLL--------------KEINSKKEIS 315
           T GI    + V+    K  ++  +  +  AD I+ +              ++I    E+ 
Sbjct: 73  TPGICSEKNHVQGQLGKLMLQSAWQGLAIADSIVCVLDGGLYLKKPDLMDRDIEPFVEVL 132

Query: 316 FPKNIDFIFIGTKSD--------------LYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
             +    + +  K D              L   +       IS+    G ++L++ I   
Sbjct: 133 RQEVRPIVIVVNKIDVFHDKSRMLPMLAKLGEYFPTAEIFPISARYKNGTDKLLDTICLK 192

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
           L       P    S     + +++ +R      L
Sbjct: 193 LPEGEAIFPEDQLSTVPVRFMVAEIIREKLFEQL 226


>gi|226953962|ref|ZP_03824426.1| GTP-binding protein [Acinetobacter sp. ATCC 27244]
 gi|226835316|gb|EEH67699.1| GTP-binding protein [Acinetobacter sp. ATCC 27244]
          Length = 445

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 63/321 (19%), Positives = 116/321 (36%), Gaps = 41/321 (12%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + T E + ++ +  +    + L   +   L   +  I         E       + + 
Sbjct: 114 LRARTHEGKLQVELAQLKHLSTRLIRGFTGNLEQQKGGIGLR---GPGESQLETDRRLIR 170

Query: 194 NDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             I  LK+ +         G   R       I ++G++NAGKS+LFN LAK DV    D 
Sbjct: 171 VRITQLKDKLIKVQQTRLQGRAARQKAAIPTISLVGYTNAGKSTLFNILAKSDV-YAADQ 229

Query: 251 PGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D     L+ +G   V ++DT G          E  K T  E   A L+L + + +
Sbjct: 230 LFATLDPTLRRLEWDGIGTVVLADTVGFVRNLQHDLVESFKATLEETLEATLLLHVVDSS 289

Query: 310 S---KKEISFPK--------NIDFIFIGTKSDL--------YSTYTEEYDHLISSFTGEG 350
           S    ++I   +        +   + +  K DL        Y          +S+ +G+G
Sbjct: 290 SPNMPEQIEAVESVLKEIGADAPILHVYNKIDLSGDTAKITYKAPELPDRVYLSAHSGQG 349

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI-IAEN- 408
           L+ L   ++  L  + ++    +   K     L   +  L +      D   D+ ++   
Sbjct: 350 LDLLSQAVQQCLMGQLQQFDLVL---KPAYGKLRTQLYTLNVIQSEHYDDEGDLHLSVCI 406

Query: 409 --------LRLASVSLGKITG 421
                   ++ A + L +I G
Sbjct: 407 APHKLEQLIKQAHLPLDEIVG 427


>gi|118579231|ref|YP_900481.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379]
 gi|118501941|gb|ABK98423.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379]
          Length = 728

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 19/192 (9%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + + G+ N GKS+L NA+A      V + PG T +      +L+G  +++ D  G
Sbjct: 14  RRVLTVAVAGNPNVGKSTLINAIAGT-RLQVGNWPGVTVEKKEALFELDGLKIRLVDLPG 72

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSD 330
                   ++E I R FL  E  DLI+ + +  + +             I  +     SD
Sbjct: 73  TYSLSPYTQEEIIARDFLVHEKPDLIVNVVDATNLERNLYLTVQLLELGIPLVMALNMSD 132

Query: 331 LYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                    D               S+    GLE L   +         + P ++     
Sbjct: 133 EADAKGYRIDGDGIEQMMGIRVIPTSATRRTGLESLQKALGEYAEAPDSRRPRTLNYGDD 192

Query: 379 HLYHLSQTVRYL 390
               L+    +L
Sbjct: 193 MERALACIREHL 204


>gi|218235676|ref|YP_002366553.1| GTP-binding protein [Bacillus cereus B4264]
 gi|218163633|gb|ACK63625.1| GTP-binding protein [Bacillus cereus B4264]
          Length = 419

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 MEELVEMIRSHIYKEYTKCEMLIPYDQGQV 380


>gi|332885935|gb|EGK06179.1| GTP-binding protein HflX [Dysgonomonas mossii DSM 22836]
          Length = 406

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 15/199 (7%)

Query: 188 SSKEVLNDILFLKNDISSHISQ-GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + +L  I FLK ++     Q     +      +  ++G++N GKS+L   L+K +V  
Sbjct: 170 DRRIILTKIAFLKEELKGIDKQMASQRKNRGKMVRAALVGYTNVGKSTLMTLLSKSEV-F 228

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + ++     +SDT G          E  K T  EV  ADL+L + 
Sbjct: 229 AENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTHLVESFKSTLDEVREADLLLHVV 288

Query: 307 EINS---KKEISFPKN---------IDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLEE 353
           +I+    +++I                 I I  K D +S    +E D    +     LEE
Sbjct: 289 DISHPNFEEQIEVVNKTLLEIDKEEKPTILIFNKVDSFSYKPKDEDDLTPKTKENISLEE 348

Query: 354 LINKIKSILSNKFKKLPFS 372
           L N   + + N    +  +
Sbjct: 349 LKNSWMNKMHNDCIFISAT 367


>gi|170288211|ref|YP_001738449.1| GTP-binding protein HflX [Thermotoga sp. RQ2]
 gi|170175714|gb|ACB08766.1| GTP-binding protein HflX [Thermotoga sp. RQ2]
          Length = 420

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 114/298 (38%), Gaps = 24/298 (8%)

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           R   E   +D  +         + +E    ++ M  +  EL  L G+  ++L+ +   I 
Sbjct: 96  REYLETEVLDRTQVILEIFARHATSEEGKLQVEMASLLYELPRLVGR-GEELSRLGGGIG 154

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
                    +V     K  ++ +     +I       +   + +    + I+G++NAGKS
Sbjct: 155 TRGPGEPLLEVLRRHIKNRISHLRKRLKEIEKEREVQRKQRLEKKIPHVSIVGYTNAGKS 214

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRT 292
           +L  +L + DV I  D    T + +T  L L+ G ++ +SDT G             K T
Sbjct: 215 TLLKSLTESDVYI-ADKLFATLEPVTRRLKLKSGKIILVSDTVGFIRKLPHTIVSAFKAT 273

Query: 293 FLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             E++ +D+++ L + +               E      I  I +  K DL      E  
Sbjct: 274 LEEIKYSDVLIHLVDASDPYLEEKMKASERVLEEIGADKIPRILVFNKIDLCPRERIETL 333

Query: 341 HL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR-HLYHLSQTVRYL 390
                    IS+    GL++L++ ++ I+  K  +    +P  K   +Y L   +  L
Sbjct: 334 KWKYPEALFISAEKRIGLDQLLDTLEEIMGQKDIQETLKVPLEKIGQIYALKDRLEIL 391


>gi|77919547|ref|YP_357362.1| ferrous iron transport protein B [Pelobacter carbinolicus DSM 2380]
 gi|77545630|gb|ABA89192.1| ferrous iron transport protein B [Pelobacter carbinolicus DSM 2380]
          Length = 654

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 25/185 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KIV++G+ N GKS LFNAL      +V++ PGT+ +V     ++EG   ++ DT G+   
Sbjct: 13  KIVLVGNPNVGKSVLFNALTGA-YTVVSNYPGTSVEVSRGCCEIEGVSYEVLDTPGMYSL 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSD---- 330
             I E+E + R  L  E+A  ++ + +  + + +           +  + +    D    
Sbjct: 72  LPITEEERVAREILLKESAHTVVHVIDARNLERMLPMTLQLVEAGLPVVLLINILDEAER 131

Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELINKIKS------ILSNKFKKLPFSIPSH 376
                   L            +     GL EL   I S       +     +L   +   
Sbjct: 132 RGMHIDIPLLQEKLGIPVIGGAMARKRGLSELRQAIASYNPDVKAVFGYSHELEKDLAKV 191

Query: 377 KRHLY 381
            RHL 
Sbjct: 192 SRHLT 196


>gi|223939697|ref|ZP_03631570.1| GTP-binding proten HflX [bacterium Ellin514]
 gi|223891654|gb|EEF58142.1| GTP-binding proten HflX [bacterium Ellin514]
          Length = 414

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 96/272 (35%), Gaps = 22/272 (8%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T+    ++ +  +   L  L   W   L+  +  I    D   + +      ++ + 
Sbjct: 107 RARTKEGKLQIELAQLQHLLPRLTRFWGH-LSRQKGGIGMRGDGETQLETDRRRVQDRIA 165

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +    S  + G          I+G++NAGKS+L NA+   DV +  +    T
Sbjct: 166 RIARELEVVRRQRSTQRHGRQRNLWPLASIVGYTNAGKSTLLNAVTGADV-LAENKLFAT 224

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D  T  L L     V ++DT G          E  K T  EV  ADL++ + + +S + 
Sbjct: 225 LDPTTRRLRLPTNQNVLLTDTVGFIRKLPHNLVEAFKATLEEVVQADLLIHVVDGSSPQA 284

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGLEELI 355
                                + +  K D        +         IS+ TGEG+ EL+
Sbjct: 285 EEQIAAVNAVLDEIGAAGKPTMMVFNKIDKLVNGERNFIQSVPNAVAISAKTGEGIPELM 344

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
            ++   L    + +  S+P     +      V
Sbjct: 345 AELGKQLKPIREFIELSVPHENAAVIARLHAV 376


>gi|45359205|ref|NP_988762.1| ATP/GTP-binding motif-containing protein [Methanococcus maripaludis
           S2]
 gi|45048080|emb|CAF31198.1| ATP/GTP-binding site motif A (P-loop):Small GTP-binding protein
           domain [Methanococcus maripaludis S2]
          Length = 184

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 34/177 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI----------DLDLEGYLV 269
           +KI ++G  N+GKSSL N++  K+++ V+++ GTT+  +             ++ +   +
Sbjct: 6   FKIALVGPENSGKSSLVNSIFGKNISEVSEVGGTTKMPVKKFWGKIKIGKQKINPDFAKI 65

Query: 270 KISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------- 318
              D  G+   ++   ++    +++T+ E++++DLI+ + + ++    SF K        
Sbjct: 66  TFVDLGGLYAGENRSVVMVGSVLEKTYEEIDDSDLIIHIIDGSTDLFKSFEKLHHLLKFR 125

Query: 319 -NIDFIFIGTKSDLYSTYTEE------------YDHLISSFTGEGLEELINKIKSIL 362
                I +  K DL      E                 SS T EG+ EL++ I  IL
Sbjct: 126 YRKPIIVVINKCDLIENSKREDLRKYVEGRLENKAFFTSSNTYEGIGELLSTIIEIL 182


>gi|291569962|dbj|BAI92234.1| probable small GTP-binding protein [Arthrospira platensis NIES-39]
          Length = 222

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 6/141 (4%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
            + N   + ++G  N GKS LFNAL    V  V++ PGTT D+ T D+ +    + I DT
Sbjct: 35  ALFNKPTVALVGSPNVGKSVLFNALTSHYVT-VSNYPGTTVDITTGDMIIGDKAIAIIDT 93

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI--GTKSDLY 332
            G+     I E+E + R  L     DL++ +      + +    N+    +  G    L 
Sbjct: 94  PGMYSLLPITEEEKVGRDLLMTRGIDLVIHVVNA---QHLGRMLNLTLQLLEAGLPVLLA 150

Query: 333 STYTEEYDHLISSFTGEGLEE 353
               +E DHL      + L+E
Sbjct: 151 VNLIDEADHLGIKINAKDLQE 171


>gi|104783871|ref|YP_610369.1| hypothetical protein PSEEN4942 [Pseudomonas entomophila L48]
 gi|95112858|emb|CAK17586.1| conserved hypothetical protein HflX [Pseudomonas entomophila L48]
          Length = 433

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 98/287 (34%), Gaps = 28/287 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFNAL + +V    D    T
Sbjct: 174 QIKARLEKVRSQREQARRGRKRADIPSVSLVGYTNAGKSTLFNALTQSEV-YAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L+L     + ++DT G          E  + T  E  N+DL+L + + +    
Sbjct: 233 LDPTLRRLELADLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDAHEPDR 292

Query: 314 ISFPKNI------------DFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +   + +              + +  K DL      +             +S+  G GLE
Sbjct: 293 MEQIEQVLAVLGEIGAESLPILEVYNKLDLLEDVEPQIQRDADGKPQRVWVSARDGRGLE 352

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
            +   I  +L +    L       ++    L      L      E D
Sbjct: 353 LVGQAIAELLGD---DLYVGTLCLEQRFARLRAQFFALGAVQSEEHD 396


>gi|332532634|ref|ZP_08408510.1| GTP-binding protein Era [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037850|gb|EGI74299.1| GTP-binding protein Era [Pseudoalteromonas haloplanktis ANT/505]
          Length = 310

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N + ++ V+I +  P TTR  +        +     DT G+  E 
Sbjct: 21  VAIVGRPNVGKSTLLNEIIEQKVSITSRKPQTTRHRIMGIHTEGKHQAVYIDTPGLHVEE 80

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +LI+ + E    N+  ++   K        + +  K D   
Sbjct: 81  KRAINRLMNRAASSSIGDVELIIFVVEGTHWNADDDMVLNKVSQSGKPVLLVINKIDQVK 140

Query: 334 TYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  H+               S+  G+ ++ +  ++   L       P    + +  
Sbjct: 141 DRDLVLPHMKWLSDKFDFVGIMPVSATQGKNVDLIKAEVTKRLPPCEFYFPEDYVTDRSM 200

Query: 380 LYHLSQTVR 388
            +  ++ +R
Sbjct: 201 RFMAAEVIR 209


>gi|227833628|ref|YP_002835335.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454644|gb|ACP33397.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC
           700975]
          Length = 386

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 28/202 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  E   + + D
Sbjct: 86  EGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHPIRGLVHREDAQIVLVD 144

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFI 323
           T G+     ++ +   +       + D+I L    + K                     I
Sbjct: 145 TPGLHRPRTLLGERLNEVVKDTYADVDVIGLTIPADEKIGPGDRWILENVRKVAPKTPII 204

Query: 324 FIGTKSD-----------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            I TK D                 L     +     +S+     L+EL   I   L    
Sbjct: 205 GIVTKLDKASKDQVGAQLVALHELLSEENPDAVVIPVSATERVQLDELTQVIVDHLPEGP 264

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
           K  P    + +     +++ +R
Sbjct: 265 KFYPDDHITDEDQSKRIAELIR 286


>gi|160935821|ref|ZP_02083196.1| hypothetical protein CLOBOL_00712 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441565|gb|EDP19275.1| hypothetical protein CLOBOL_00712 [Clostridium bolteae ATCC
           BAA-613]
          Length = 699

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 26/202 (12%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
              E  R    +  +G+ N GK++LFNA     +  V + PG T + +  +   +G  +K
Sbjct: 30  DQHEDDRTPITVGFVGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERVEGETSYKGRPIK 88

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIF 324
           + D  GI        +E + R  +E    D+I+ + + +S +                I 
Sbjct: 89  VIDLPGIYSLTSYTIEEKVTRKCIEDGGVDVIINVVDASSLERNLYLTMQLIELKKPVIL 148

Query: 325 IGTKSDLYSTYTEEYDHLI-------------SSFTGEGLEELINKIKSILSNKFKKLPF 371
                D+      E D                S+    GL+ L++     + + +++ P 
Sbjct: 149 ALNMMDIVEERGMEIDMHRLPELLGEIPVVPVSARKRTGLDVLMHA----VVHHYEEGPQ 204

Query: 372 SIPSHKRHLYHLSQTVRYLEMA 393
            +    R+   + + +R +E A
Sbjct: 205 GVVI--RYSQEVEEKIRLIEEA 224


>gi|110806511|ref|YP_690031.1| GTP-binding protein Era [Shigella flexneri 5 str. 8401]
 gi|122957275|sp|Q0T1T9|ERA_SHIF8 RecName: Full=GTPase Era
 gi|110616059|gb|ABF04726.1| GTP-binding protein [Shigella flexneri 5 str. 8401]
          Length = 301

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ +   ++  L       P    +    
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDCSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|77359239|ref|YP_338814.1| protease GTPase subunit [Pseudoalteromonas haloplanktis TAC125]
 gi|76874150|emb|CAI85371.1| HflX, putative GTPase subunit of protease with nucleoside triP
           hydrolase domain [Pseudoalteromonas haloplanktis TAC125]
          Length = 429

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 97/287 (33%), Gaps = 28/287 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  +        + +      +  L 
Sbjct: 114 RARTHEGKLQVELAQLRHMSTRLIRGWTH-LERQKGGVGLRGPGETQLETDRRLLRARLQ 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I    + ++    QG+          + ++G++NAGKS+LFN +   DV    D    T
Sbjct: 173 NIRARLDKVAVQREQGRRARSRNEIPTVSLVGYTNAGKSTLFNRITNSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADL---ILLLKEINS 310
            D     L+L     V ++DT G             K T  E   ADL   ++ + +   
Sbjct: 232 LDPTLRKLELGDVGPVILADTVGFIRHLPHDLVAAFKATLTETREADLQLHVIDVADARL 291

Query: 311 KKEISF---------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           K+ I              +  + +  K D     T   D           +S+ TGEG E
Sbjct: 292 KENIEQVQSVLKEIEADEVPQLLVYNKIDALDDITARIDRDDEGQPIRVWLSAQTGEGCE 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
            L   I  +L+ +       +         L  ++  L   S    D
Sbjct: 352 LLSEAISELLAKQMLSETLLLAP---QYGRLRSSLFSLSAVSDERFD 395


>gi|291457546|ref|ZP_06596936.1| GTP-binding protein HflX [Bifidobacterium breve DSM 20213]
 gi|291380599|gb|EFE88117.1| GTP-binding protein HflX [Bifidobacterium breve DSM 20213]
          Length = 508

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 79/217 (36%), Gaps = 21/217 (9%)

Query: 208 SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            + K G   R G   + ++G++NAGKSSL N L      +   +  T    +      +G
Sbjct: 275 REIKRGSRRRFGLPTVAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRAKTHDG 334

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------E 313
                 DT G          E  K T  EV  AD+I+ + + +                +
Sbjct: 335 RAFAYVDTVGFVRRLPTQLVEAFKSTLEEVGEADVIVHVVDGSHPDPFSQIDAVNDVLAD 394

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKF 366
           I    +I  I +  K+D       E          ++S+++G+GL+ L + ++ +L    
Sbjct: 395 IEGTVSIPRILVFNKADQIDDAKRERLAALQPDAFIVSAYSGKGLDALRDAVEELLPVPH 454

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
             +   +P     L    +    ++     +    L+
Sbjct: 455 VHINALLPYTAGSLLSRVREYGKVDSVEYRDDGVALE 491


>gi|332705058|ref|ZP_08425143.1| GTP-binding protein Era [Lyngbya majuscula 3L]
 gi|332356235|gb|EGJ35690.1| GTP-binding protein Era [Lyngbya majuscula 3L]
          Length = 338

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 88/261 (33%), Gaps = 41/261 (15%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           +++D     S +   +   +K  +   I     G   ++G+ + I+G  N GKS+L N L
Sbjct: 8   QDQDDSTIDSSQDNLEEKVIKPSVLGTIPVAPDG--FKSGF-VAIVGRPNVGKSTLMNKL 64

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE-- 297
             + +AI + +  TTR+ L   L      +   DT GI +    + K  +K   + +E  
Sbjct: 65  VGQKIAITSPVAQTTRNRLRGILTTPEAQLIFVDTPGIHKPHHQLGKVLVKNAQIAIELV 124

Query: 298 -----------NADLILLLKEINSKKEISFPKNIDFIFIG--TKSDLYSTYTEEYDHL-- 342
                       A           +  +    +     I    KSD+   ++        
Sbjct: 125 DVVLLVVDSTVEA-------GGGDRFIVDLLSHTKTPVILGVNKSDIQPRHSRGESIDAS 177

Query: 343 --------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
                          S+ T + L+ L  K+   L       P    + +   + + + +R
Sbjct: 178 YAKLATAQGWEVVKFSALTADRLDLLQQKLIERLEPGPYYYPPDFLTDQPERFIMGELIR 237

Query: 389 YLEMASLNEKDCGLDIIAENL 409
              +    E+      I  +L
Sbjct: 238 EQILLLTREEVPHSVAITIDL 258


>gi|150026443|ref|YP_001297269.1| GTP-binding protein HflX [Flavobacterium psychrophilum JIP02/86]
 gi|149772984|emb|CAL44468.1| GTP-binding protein HflX [Flavobacterium psychrophilum JIP02/86]
          Length = 413

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 82/206 (39%), Gaps = 17/206 (8%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L  +    I + +  +    G   ++ ++G++N GKS+L NA+ 
Sbjct: 161 ETEIETDRRIVRDRIALLKEKIKIIDKQQATQRGNRGAMVRVALVGYTNVGKSTLMNAVG 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K DV  V +    T D     + ++     +SDT G          +  K T  EV  AD
Sbjct: 221 KSDV-FVENKLFATLDTTVRKVVIKNLPFLLSDTVGFIRKLPTQLVDSFKSTLDEVREAD 279

Query: 301 LILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           L+L + +I+ +                   +   I +  K D Y   T + D L++  T 
Sbjct: 280 LLLHVVDISHQDFEDHIDAVNKILLDIKSADKPTIMVFNKIDAYKHLTIDADDLMTERTS 339

Query: 349 EGLEELINKIKSILSNKFKKLPFSIP 374
           +     + + K+   NK  +      
Sbjct: 340 KHYT--LQEWKNTWMNKVGEQNALFI 363


>gi|229011172|ref|ZP_04168365.1| hypothetical protein bmyco0001_16240 [Bacillus mycoides DSM 2048]
 gi|228750055|gb|EEL99887.1| hypothetical protein bmyco0001_16240 [Bacillus mycoides DSM 2048]
          Length = 419

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 101/270 (37%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAK------KDVAI 246
           I  L  ++ + ++Q +     R       + ++G++NAGKS++ N + +      +    
Sbjct: 171 IAALNKELEALVAQRQTQRKQRKKNEIPVVSLVGYTNAGKSTIMNTMLEIFNGTVEKQVF 230

Query: 247 VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KEINSKKEISFP------------KNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            + ++                   +NI  I+   KSDL        +E    +S+    G
Sbjct: 291 VDYSNPNYEQLIDITNETLKKIGVENIPTIYAYNKSDLVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           ++EL+  ++S +  ++ K    IP  +  +
Sbjct: 351 IKELVEVVRSHIYKEYTKCEMLIPYDQGQV 380


>gi|154494034|ref|ZP_02033354.1| hypothetical protein PARMER_03379 [Parabacteroides merdae ATCC
           43184]
 gi|154086294|gb|EDN85339.1| hypothetical protein PARMER_03379 [Parabacteroides merdae ATCC
           43184]
          Length = 403

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 95/232 (40%), Gaps = 18/232 (7%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + +L+ I  LK D+     Q  +    R    ++ ++G++N GKS+L N L+K +V  
Sbjct: 169 DKRIILDKISKLKRDLVEIDKQKSVQRKNRGKMVRVALVGYTNVGKSTLMNLLSKSEV-F 227

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + ++     +SDT G          E  K T  EV  ADL++ + 
Sbjct: 228 AENKLFATLDTTVRKVIVDNLPFLLSDTVGFIRKLPTELVESFKSTLDEVREADLLVHVV 287

Query: 307 EINS---KKEISFPK---------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           +I+    +++I                 I +  K D ++   ++ D  ++  T E ++  
Sbjct: 288 DISHPTFEEQIEVVNRTLSEIDKTEKPMIMVFNKIDAFTFVPKDED-DLTPRTRENID-- 344

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DII 405
           ++++K    NK +     I + +R      + + Y  +  ++       D +
Sbjct: 345 LDELKRTWMNKMQDNCIFISAKERTNIDALKALLYERVKQIHITRFPYNDFL 396


>gi|33332419|gb|AAQ11417.1| GTP-binding protein ERA [Yersinia enterocolitica]
          Length = 177

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E 
Sbjct: 12  IAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 71

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E     +  E+   K        +    K D  +
Sbjct: 72  KRAINRLMNRAASSSIGDVELVIFVVEGTNWTADDEMVVNKLRSLQCPVLLAINKVDNVT 131

Query: 334 TYTEEYDHLI 343
             T+   H+ 
Sbjct: 132 DKTKLLPHIQ 141


>gi|23308879|ref|NP_601147.2| GTPase [Corynebacterium glutamicum ATCC 13032]
 gi|21324710|dbj|BAB99333.1| GTPases [Corynebacterium glutamicum ATCC 13032]
          Length = 486

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 105/275 (38%), Gaps = 36/275 (13%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQW-----IDKLTHIRSFIEADLDFSEEEDVQNFSS 189
            +++     ++++  M   L S    W             S     L    E  ++    
Sbjct: 168 HAKSREGKAQVALAQME-YLISRVRGWGGNLSRQAGGRAGSNGGVGLRGPGETKIE-ADR 225

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAI 246
           + + +D+  L+ ++S   +   +    R      +I I G++NAGKSSL NA+    V +
Sbjct: 226 RRLRSDMARLRRELSGLDTSRSIKRAQRAASLVPQIAIAGYTNAGKSSLINAMTGAGV-L 284

Query: 247 VTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           V +    T D  T   +L +G  V  +DT G          E  K T  EV  ADL+L +
Sbjct: 285 VENALFATLDPTTRKAELADGRHVVFTDTVGFVRHLPTSLVEAFKSTLEEVVEADLMLHV 344

Query: 306 KEINSKKEISFPKNIDF----------------IFIGTKSDLYSTYTE-------EYDHL 342
            + +    +     ++                 I +  K D     T        +    
Sbjct: 345 VDGSDPFPLKQIDAVNTVISDIVRSTGAVPPPEIIVVNKIDQADPLTLAELRHAVDDVVF 404

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +S+ TGEG++EL  +I+  L+++   L   IP  +
Sbjct: 405 VSALTGEGIKELEARIELFLNSRDAHLLLKIPFTR 439


>gi|307104847|gb|EFN53099.1| hypothetical protein CHLNCDRAFT_137429 [Chlorella variabilis]
          Length = 609

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 87/239 (36%), Gaps = 21/239 (8%)

Query: 89  IAVVNGILEELAKM-----PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143
            A+   +L+ +A +        R A        A    K     A  L  ++ + T    
Sbjct: 81  RALQRPVLDRVALIIEIFSQRARTAEARLQVELASLEYK-----ASRLVRVVDAATGK-- 133

Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
             +  G++GE S +     ++               + E       + V +    L   +
Sbjct: 134 -RAAFGLAGEASEIVSA-RERGRSGSGAGGLGGAGGQGESELQLQRRRVADRRKQLLRKL 191

Query: 204 SSHISQ--GKLGEIIRNG-YKIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVL 258
                    +     R+G  ++ I+G++NAGKSSL +AL    +  A V D    T D  
Sbjct: 192 EEVRKTRGVQRAARRRSGKPQVAIVGYTNAGKSSLLSALSKCGEAEAGVEDKLFATLDPT 251

Query: 259 TIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
              + L G    V +SDT G          E  + T  EV  ADL+L + + +S + + 
Sbjct: 252 LRRVMLPGSGRDVVLSDTVGFISDLPTQLIEAFQATLEEVTEADLLLHVLDASSPQVLQ 310


>gi|294786873|ref|ZP_06752127.1| GTP-binding protein Era [Parascardovia denticolens F0305]
 gi|315226509|ref|ZP_07868297.1| GTP-binding protein Era [Parascardovia denticolens DSM 10105]
 gi|294485706|gb|EFG33340.1| GTP-binding protein Era [Parascardovia denticolens F0305]
 gi|315120641|gb|EFT83773.1| GTP-binding protein Era [Parascardovia denticolens DSM 10105]
          Length = 352

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ I ++G  N GKS+L NA+  K VAI +  P TTR  +   +  +   + + D
Sbjct: 39  EAFRSGF-IAVVGRPNVGKSTLINAIVGKQVAITSSKPETTRKAIRAIVTTDDCQLVLVD 97

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           T G  +   ++ ++        + + D +  L   + +
Sbjct: 98  TPGFHKPRTLLGQKLNDIVDESLADVDAVAFLLPADQE 135


>gi|254294018|ref|YP_003060041.1| GTP-binding proten HflX [Hirschia baltica ATCC 49814]
 gi|254042549|gb|ACT59344.1| GTP-binding proten HflX [Hirschia baltica ATCC 49814]
          Length = 445

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 32/235 (13%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQ---GKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           E       + +   I  LK+D+ +        + G   R    + + G++NAGKS+LFN+
Sbjct: 165 ESQLEADRRMLDGRIAKLKSDLEAVRRTRRLQRAGRKRRGAPIVALAGYTNAGKSTLFNS 224

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           L    V    D+P  T D    D++L  G  + + DT G          E  + T  E  
Sbjct: 225 LTHSSV-FAADMPFATLDPTARDVELSSGKKISMIDTVGFITDLPTHLIESFRATIEEAI 283

Query: 298 NADLILLLKEINSKKEISFPKN----------------IDFIFIGTKSDLYS-------- 333
            ADL+L +++I+  +      +                   I +  KSD  S        
Sbjct: 284 EADLLLHVRDISHPETDRQSSDVNDVLTKLEQDLNADRPPVIEVWNKSDALSDDVLTALK 343

Query: 334 --TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQ 385
                 +   L S+ TGEGL++L+  ++  L    ++    I P + R    L Q
Sbjct: 344 TTVENRDDIALTSATTGEGLDDLMQMVQDKLFASTREFELKIEPKYGRARSWLHQ 398


>gi|159037045|ref|YP_001536298.1| small GTP-binding protein [Salinispora arenicola CNS-205]
 gi|157915880|gb|ABV97307.1| small GTP-binding protein [Salinispora arenicola CNS-205]
          Length = 515

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 81/229 (35%), Gaps = 26/229 (11%)

Query: 205 SHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
             + Q K     RN    + I G++NAGKSSL N L    V +   +  T    +     
Sbjct: 260 RTVRQTKRARRTRNAVPAVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTIRKATT 319

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----- 318
            +G     SDT G          E  + T  EV  ADL++ + +          +     
Sbjct: 320 QDGRHFTFSDTVGFVRHLPHQIVEAFRSTLEEVAEADLVVHVVDGTHPDPEEQVRAVRAV 379

Query: 319 -------NIDFIFIGTKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSN 364
                   +  + +  K+D     T            L+S+ +G G+++L   +++ L  
Sbjct: 380 LAEVGADRLPELLVVNKTDAADEETLLRLKRLWPEAILVSAHSGHGVDDLRRVVEARLPR 439

Query: 365 KFKKLPFSIPSHKRHLYH-LSQTVRYLEMASLNEKDC-----GLDIIAE 407
              +    +P  +  L   + Q    L  A L E        G+ + AE
Sbjct: 440 PAVETRAVLPYDRGDLVARVHQQGEVLSTAHLPEGTLLHVRVGVALAAE 488


>gi|114770107|ref|ZP_01447645.1| GTP-binding protein Era [alpha proteobacterium HTCC2255]
 gi|114548944|gb|EAU51827.1| GTP-binding protein Era [alpha proteobacterium HTCC2255]
          Length = 303

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 75/201 (37%), Gaps = 24/201 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N +    V+IVT    TTR  +      E   +   DT G+ +T 
Sbjct: 9   VALIGEPNAGKSTLMNRIVGAKVSIVTHKVQTTRARIRGIAMQENSQLVFVDTPGLFKTR 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----------SKKEISFPKNIDFIFIGTKSD 330
             ++K  +   +    +AD+++L+ E +              E    K    I    K D
Sbjct: 69  RKLDKAMVAAAWSGAADADIVVLIVEAHRGITDGVEMILEGLEKRDVKGQRLILAINKID 128

Query: 331 -------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                        L      E   +IS+  G G++ L + + S L       P    +  
Sbjct: 129 KIKSDALLSLTQSLNQRLNFEETFMISAEKGYGVKVLQDWLSSNLPFGPYLYPEDQIADV 188

Query: 378 RHLYHLSQTVRYLEMASLNEK 398
                 ++  R   M  L+++
Sbjct: 189 PMRMIAAEMTREKLMLRLHQE 209


>gi|20090251|ref|NP_616326.1| GTP-binding protein [Methanosarcina acetivorans C2A]
 gi|19915245|gb|AAM04806.1| GTP-binding protein [Methanosarcina acetivorans C2A]
          Length = 338

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 82/204 (40%), Gaps = 22/204 (10%)

Query: 183 DVQNFSSKEVLNDILFLKNDISS-HISQGKLGEIIR------NGYKIVILGHSNAGKSSL 235
           D  +   KE    +  +   I+   +   +   I+R      +   IVI G+ N GKSS 
Sbjct: 117 DTPDPVRKEAFGRLASIIKSINKDLLFLNEARNILRKLPDVQDEPTIVIAGYPNVGKSSF 176

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            + +      I    P TT+ V       +G   ++ DT G+ +       +  ++    
Sbjct: 177 VSKITGASPEI-APYPFTTKGVTIGHFIRDGIRYQVMDTPGLLDRPMAERNDIERQAITA 235

Query: 296 VENAD-LILLLKEINSK------------KEISFPKNIDFIFIGTKSDLYSTYT-EEYDH 341
           +   D +++ + + +               EI    ++  + +  K+D       +E + 
Sbjct: 236 IHFLDAVVMFIMDPSESCGYEIEDQKRLLAEIRENFDLPLLVVANKADRPEFRKMDEIEL 295

Query: 342 LISSFTGEGLEELINKIKSILSNK 365
            IS+ TGEG+EE+++++  ++  K
Sbjct: 296 NISTITGEGIEEVMDRLLEMIEEK 319


>gi|229150075|ref|ZP_04278298.1| hypothetical protein bcere0011_16310 [Bacillus cereus m1550]
 gi|228633374|gb|EEK89980.1| hypothetical protein bcere0011_16310 [Bacillus cereus m1550]
          Length = 419

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 MEELVEMIRSHIYKEYTKCEMLIPYDQGQV 380


>gi|300933265|ref|ZP_07148521.1| GTP-binding protein Era [Corynebacterium resistens DSM 45100]
          Length = 321

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 79/223 (35%), Gaps = 24/223 (10%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
                E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  +   
Sbjct: 20  DFSAPEGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHPIRGVIHRDDSQ 78

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPK 318
           + + DT G+     ++ +   +      ++ DLI +    + K                 
Sbjct: 79  IVVVDTPGLHRPRTLLGERLNEIVKDTYQDVDLIAVCVPADEKIGPGDRWIVDAVRKVAP 138

Query: 319 NIDFIFIGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
             + I + TK D             L+          +S+     L+ L + I   L   
Sbjct: 139 KTELIGVVTKVDKVGKDKVGEQLLALHDLLEGAEVIPVSATEKIQLDVLADVIADHLPEG 198

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            K  P    +       +++ +R   +A L ++      +  +
Sbjct: 199 PKFYPDDHVTDDDRDTRMAELIREAALAGLQDELPHSVAVQID 241


>gi|258516724|ref|YP_003192946.1| GTP-binding proten HflX [Desulfotomaculum acetoxidans DSM 771]
 gi|257780429|gb|ACV64323.1| GTP-binding proten HflX [Desulfotomaculum acetoxidans DSM 771]
          Length = 414

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 24/207 (11%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +E + DI     ++  H +  + G   +    + ++G++NAGKS+L N L   DV +V D
Sbjct: 167 RERIVDIQAELEEVKKHRALLRKGR--KQVPVVSLVGYTNAGKSTLLNKLTGSDV-LVED 223

Query: 250 IPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE- 307
               T D  T  + L     + ++DT G  +          + T  EV  ADL+L + + 
Sbjct: 224 KLFATLDPTTRQVILPNNDEILVTDTVGFIQNLPHHLVAAFRATLEEVIEADLLLHVVDS 283

Query: 308 -----------INSKKEISFPKNIDFIFIGTKSD--------LYSTYTEEYDHLISSFTG 348
                      + S       +N   I +  K+D        L+          IS+ TG
Sbjct: 284 THPNCFEQYKAVQSVLSSLEVENKPSILVLNKADGLPKPDLNLWINIAGTPVTAISALTG 343

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           EGL  L+  I   L+ +  +  F IP 
Sbjct: 344 EGLPGLLETIAKNLAYRRVRTTFLIPY 370


>gi|330993264|ref|ZP_08317200.1| GTP-binding protein hflX [Gluconacetobacter sp. SXCC-1]
 gi|329759666|gb|EGG76174.1| GTP-binding protein hflX [Gluconacetobacter sp. SXCC-1]
          Length = 436

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 96/258 (37%), Gaps = 29/258 (11%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ +  +  + S L   W   L   R          E +       + + + 
Sbjct: 122 AATREGTLQVELAHLEYQRSRLVRTWTH-LERQRGGFGFLGGPGETQI--EADRRMIGDR 178

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           I+ LK ++        L    R       + ++G++NAGKS+LFNAL    V     +  
Sbjct: 179 IVRLKRELEQVRRTRGLHRQARRRVPFPIVALVGYTNAGKSTLFNALTGASVYAQDQLFA 238

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T    +       G  V +SDT G             + T  EV  AD+IL +++++   
Sbjct: 239 TLDPTMRGIQLPSGRRVILSDTVGFISDLPTELIAAFRATLEEVAEADIILHVRDVSHPD 298

Query: 313 EISFPKNI-------------------DFIFIGTKSDLY----STYTEEYDHLISSFTGE 349
             S  +++                     I +  K+DL     +      + +IS+ TG+
Sbjct: 299 SASQRQDVIEVLEGMARNGTIEEDWQGRVIEVLNKADLVGGREAVGARPGNVVISAITGD 358

Query: 350 GLEELINKIKSILSNKFK 367
           GL +L+  I   ++   +
Sbjct: 359 GLPDLLAAIDERMTRAME 376


>gi|229017157|ref|ZP_04174071.1| hypothetical protein bcere0030_17200 [Bacillus cereus AH1273]
 gi|229023337|ref|ZP_04179842.1| hypothetical protein bcere0029_16780 [Bacillus cereus AH1272]
 gi|228737955|gb|EEL88446.1| hypothetical protein bcere0029_16780 [Bacillus cereus AH1272]
 gi|228744138|gb|EEL94226.1| hypothetical protein bcere0030_17200 [Bacillus cereus AH1273]
          Length = 419

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 101/270 (37%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAK------KDVAI 246
           I  L  ++ + ++Q +     R       + ++G++NAGKS++ N + +      +    
Sbjct: 171 IAALNKELEALVAQRQTQRKQRKKNEMPVVSLVGYTNAGKSTIMNTMLEIFNGTVEKQVF 230

Query: 247 VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KEINSKKEISFP------------KNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            + ++                   +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYSNPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  ++S +  ++ K    IP  +  +
Sbjct: 351 IEELVELVRSHIYKEYTKCEMLIPYDQGQV 380


>gi|326773544|ref|ZP_08232827.1| GTP-binding protein Era [Actinomyces viscosus C505]
 gi|326636774|gb|EGE37677.1| GTP-binding protein Era [Actinomyces viscosus C505]
          Length = 397

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+   I+G  NAGKS+L NA+    +AI +  P TTR  +   +  E   + + D
Sbjct: 94  EDFRAGF-ACIVGRPNAGKSTLTNAMVGAKIAITSGRPQTTRHNVRGVIHKENAQIVLVD 152

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           T G+     ++ K         + + D+++     N K
Sbjct: 153 TPGLHRPRTLLGKRLNDLVRETLADVDVVVFCIPANEK 190


>gi|225376604|ref|ZP_03753825.1| hypothetical protein ROSEINA2194_02246 [Roseburia inulinivorans DSM
           16841]
 gi|225211487|gb|EEG93841.1| hypothetical protein ROSEINA2194_02246 [Roseburia inulinivorans DSM
           16841]
          Length = 414

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 26/249 (10%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++     K+ +  +     ++  H    +            I+G++NAGKS+L N L   
Sbjct: 165 EIDRRLIKDRIAQLNRELKEVRQHRDITRAQREKNQMPVAAIVGYTNAGKSTLINTLTNA 224

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D    T D  T  L+L G   + ++DT G          E  K T  E + AD 
Sbjct: 225 GV-LEEDKLFATLDPTTRVLELSGQQQILVTDTVGFIRKLPHHLIEAFKSTLEEAKYADY 283

Query: 302 ILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYS------TYTEEYDHLI 343
           IL + + ++ +                 K+   I +  K D          +  ++   I
Sbjct: 284 ILHVVDASNPQHEKQMLIVYETLANLDVKDKTVITLFNKQDARMDSEPLHDFKADHTLPI 343

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPS-HKRHLYHLSQTVRYL-----EMASLNE 397
           S+  G GLEEL N +  +L      +  ++P  +   +  + ++   L     E      
Sbjct: 344 SAKNGTGLEELKNLLSELLRENKILVERTVPYANAGVIQLVRKSGELLEEEYREDGIYIR 403

Query: 398 KDCGLDIIA 406
               ++I A
Sbjct: 404 AYVPMEIYA 412


>gi|190573719|ref|YP_001971564.1| putative GTP-binding phage-like protein [Stenotrophomonas
           maltophilia K279a]
 gi|190011641|emb|CAQ45260.1| putative GTP-binding phage-related protein [Stenotrophomonas
           maltophilia K279a]
          Length = 436

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 89/288 (30%), Gaps = 29/288 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W          I        + +      ++ +  +      +   
Sbjct: 125 LAQLRHLATRLVRGWTHLERQRGGSIGLRGPGETQLETDRRLLQKRVEQLQKRLEKVEVQ 184

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +   +     ++ ++G++NAGKS+LFNA+   + A   D    T D     + + G
Sbjct: 185 RTQMRRARVRSELPRVALVGYTNAGKSTLFNAMTGAE-AYAADQLFATLDPTVRRIAVPG 243

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------- 318
             V ++DT G             + T  E   AD +L + +                   
Sbjct: 244 GNVVLADTVGFVRDLPHDLVAAFRSTLSEAREADFLLHVVDAADPHREERIAQVDEVLTA 303

Query: 319 ----NIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSI 361
               ++  + +  K D        +D               IS+  G+GLE L   +   
Sbjct: 304 VGAGDLPQLLVFNKIDRIDGADVRHDGQDGIPDESRRERVWISARDGQGLELLQAVLGKR 363

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           L  +       +P     L      +  +     +E      ++  +L
Sbjct: 364 LGLQHVTGELRLPPDAGRLRARLHQLEVIRSEQADEDGW---LLQVDL 408


>gi|304398619|ref|ZP_07380491.1| GTP-binding protein Era [Pantoea sp. aB]
 gi|304353830|gb|EFM18205.1| GTP-binding protein Era [Pantoea sp. aB]
          Length = 301

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGEYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISFPKNIDFIFIG--TKSDLYS 333
              + +   +     + + +L++ + E      + +  ++  ++     +    K D   
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDNKVPVVLAINKVDNIQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             +    H               IS+ +G+ ++ +    +  L       P    + +  
Sbjct: 131 DKSILLPHLQFLSQQMNFLDIVPISAESGKNVDTIAAITRKHLPQADHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEMIR 199


>gi|293402143|ref|ZP_06646282.1| GTP-binding protein HflX [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304535|gb|EFE45785.1| GTP-binding protein HflX [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 414

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 98/256 (38%), Gaps = 26/256 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAK- 241
               + +   I  +  ++    +Q       R   +   + ++G++NAGKS++ N L + 
Sbjct: 152 ELDRRRIKARIHEVDRELKKVEAQRHTQRRARQRSRLPLVALVGYTNAGKSTIMNQLLRC 211

Query: 242 ----KDVAIVT-DIPGTTRD-VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
               ++  +V  D+   T D  +       G+   +SDT G          E    T  E
Sbjct: 212 SAHKEEKQVVEKDMLFATLDTSIRCIAQPHGHSFLLSDTVGFVNRLPHELIEAFHSTLEE 271

Query: 296 VENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYS---TYTEEYD 340
           V+ AD++L + + + +++                 ++  + +  K D       +++E++
Sbjct: 272 VKYADMLLQVVDASDEEKAKHMAVTMETLREIGAGDLPMLTVFNKCDKTEYPYPHSKEHE 331

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
             IS+   + ++ L++ +   L  +   +   +P  +  +Y +      +      E+  
Sbjct: 332 LYISAKAKDNMDALLSALNKQLFAQEHHVKLQLPYEQTAIYAVLMKQACILEREDQEEGM 391

Query: 401 GLD-IIAENLRLASVS 415
            LD ++ E L      
Sbjct: 392 YLDALLNEELYQKYQH 407


>gi|319948153|ref|ZP_08022315.1| GTP-binding proten HflX [Dietzia cinnamea P4]
 gi|319438182|gb|EFV93140.1| GTP-binding proten HflX [Dietzia cinnamea P4]
          Length = 483

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 30/216 (13%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG----YKIVILGHSNAGKSSLFNALAKKD 243
             + +   +  L+ +I   + Q +  +  R        I I G++NAGKSSL N +    
Sbjct: 217 DRRRIRERMAKLRREIKG-MKQSRDTKRYRRRATPVPSIAIAGYTNAGKSSLLNRITGAG 275

Query: 244 VAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           V +V +    T D  T   DL +G  V  +DT G          E  + T  EV +++L+
Sbjct: 276 V-LVQNALFATLDPTTRRADLPDGRSVVFTDTVGFVRHLPTQLVEAFRSTLEEVVDSELL 334

Query: 303 LLLKE----------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---- 342
           L + +                IN   E    +    + +  K D          H     
Sbjct: 335 LHVVDGSDAFPLRQIEAVRKVINEVVEEQNAERPRELVVINKIDAADPVVLTELHHALPD 394

Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
              +S+ TG+G++EL+ +I  I+++   ++   +P 
Sbjct: 395 AVFVSAATGQGVDELLERIMQIVASGDMEMTLEVPY 430


>gi|315502608|ref|YP_004081495.1| gtp-binding proten hflx [Micromonospora sp. L5]
 gi|315409227|gb|ADU07344.1| GTP-binding proten HflX [Micromonospora sp. L5]
          Length = 487

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 28/200 (14%)

Query: 205 SHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKK----DVAIVTDIPGTTRDVLT 259
           + + Q K     RN    + I G++NAGKSSL N L       + A+   +  TTR   T
Sbjct: 239 ATVRQTKRARRTRNAVPAVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTTRRATT 298

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE---------INS 310
                +G L  +SDT G          E  + T  EV +ADL++ + +         + +
Sbjct: 299 ----SDGRLYTLSDTVGFVRHLPHQIVEAFRSTLEEVADADLVVHVVDGTHPDPEEQVRA 354

Query: 311 KKEISFPKNIDF---IFIGTKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKS 360
            +E+      D    + +  K+D     T             +S+ +G G++E+   ++ 
Sbjct: 355 VREVLAEVGADRLPELLVVNKTDATDEETMLRLKRLWPDAVFVSAHSGRGIDEMREAVER 414

Query: 361 ILSNKFKKLPFSIPSHKRHL 380
            L     ++   +P  +  L
Sbjct: 415 RLPRPAVEVRAVLPYDRGDL 434


>gi|257059220|ref|YP_003137108.1| small GTP-binding protein [Cyanothece sp. PCC 8802]
 gi|256589386|gb|ACV00273.1| small GTP-binding protein [Cyanothece sp. PCC 8802]
          Length = 531

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 111/255 (43%), Gaps = 24/255 (9%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDI--SSHISQGKLGE--IIRNGYKIVILGHSNAGKSS 234
            ++ +    + K V   +  +++ +   + +++ +  E  + R   K+V+ G  +AGK+S
Sbjct: 86  EQKTEAAQETLKAVRRQVQQIQDKVTQKALLNRSQEIEASLTRGELKVVVFGTGSAGKTS 145

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKR- 291
           L NAL  + V  V    GTT+   T  L L G    + I+DT GI E       EG +R 
Sbjct: 146 LINALIGEMVGNVEATMGTTQIGETYRLKLRGVSQEILITDTPGILEAG----VEGTQRE 201

Query: 292 --TFLEVENADLILLLKEINSKK------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
                    ADL+L + + + ++      +I        + I  K DL   YTE+   LI
Sbjct: 202 KLARQLATEADLLLFVVDNDLRQSEYDPLQILAKIGKRSLLIFNKIDL---YTEDEISLI 258

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
                E +++LI +   IL     +         + +      +  ++  ++  +  G D
Sbjct: 259 KQQLQERVKDLIGESDLILIAANPQPFE--VETGKIIKAEPDIIPLIKRLAVVLRAEGED 316

Query: 404 IIAENLRLASVSLGK 418
           +IA+N+ L S  LG+
Sbjct: 317 LIADNILLQSQRLGE 331


>gi|260903862|ref|ZP_05912184.1| GTP-binding protein Era [Brevibacterium linens BL2]
          Length = 311

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 1/98 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+    +G  N GKS+L NAL  + VAI +  P TTR  +   +  + + + + D
Sbjct: 9   ENYRAGF-ACFVGRPNTGKSTLTNALVGEKVAITSAKPQTTRHTIRGIVHKDDHQLILVD 67

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           T G+ +   ++           +   D+I      +  
Sbjct: 68  TPGLHKPRTLLGSRLNDLVASTLSEVDVIGFCLPADEP 105


>gi|13959677|sp|Q49768|ERA_MYCLE RecName: Full=GTPase Era
          Length = 300

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 72/197 (36%), Gaps = 26/197 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275
           R+G+ + ++G  N GKS+L NAL    VAI +  P TTR  +   +  EG + + + DT 
Sbjct: 5   RSGF-VCLIGRPNTGKSTLTNALVGTKVAITSMKPQTTRHTIRGIVHREGNFQIVLVDTP 63

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFI 325
           G+     ++ K             DLI L    +            +  S       + I
Sbjct: 64  GLHRPRTLLGKRLNDLVRDTYTEVDLIGLCIPADEATGPGDRWIVNQIRSVAPKTILVVI 123

Query: 326 GTKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            TK D                          +S+ TGE ++ LI+ + + L         
Sbjct: 124 VTKIDKVPKDRLSAQLVAVSDLVADSAEIVPVSAVTGEQVDVLIDVLAAALPPGPAYYSA 183

Query: 372 SIPSHKRHLYHLSQTVR 388
              + +     +++ +R
Sbjct: 184 GELTDEPEELLMAELIR 200


>gi|226328141|ref|ZP_03803659.1| hypothetical protein PROPEN_02032 [Proteus penneri ATCC 35198]
 gi|225203845|gb|EEG86199.1| hypothetical protein PROPEN_02032 [Proteus penneri ATCC 35198]
          Length = 170

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 8/128 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTDGAYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E  +     E+   K        +    K D   
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTNWTPDDEMVLNKLKSLRCPVLLAINKVDNVI 130

Query: 334 TYTEEYDH 341
             T+   H
Sbjct: 131 DKTKLLPH 138


>gi|283458064|ref|YP_003362675.1| GTPase [Rothia mucilaginosa DY-18]
 gi|283134090|dbj|BAI64855.1| GTPase [Rothia mucilaginosa DY-18]
          Length = 391

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 10/127 (7%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   ++G  NAGKS+L NA+  + VAI ++ P TTR  +   +  + Y + + DT G
Sbjct: 33  RSGF-ASLVGRPNAGKSTLTNAMVGQKVAITSNRPQTTRHTIRGIVHKDEYQLILVDTPG 91

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           I     ++ +         +   D++      N K          ++    N   + I T
Sbjct: 92  IHRPRTLLGERLTDLVASTLSQVDVLGFCIPANEKIGPGDRYIASQLVASSNKPVVAIVT 151

Query: 328 KSDLYST 334
           K+D  S+
Sbjct: 152 KADTVSS 158


>gi|224003597|ref|XP_002291470.1| gtp-binding protein [Thalassiosira pseudonana CCMP1335]
 gi|220973246|gb|EED91577.1| gtp-binding protein [Thalassiosira pseudonana CCMP1335]
          Length = 446

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 19/135 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +    + I+G  NAGKS L N+L    VA V+    TTR  +      +   +   DT G
Sbjct: 68  QKRLDVAIVGAPNAGKSQLLNSLIGSKVAAVSRKRHTTRTGILGARTFDDTQLVFIDTPG 127

Query: 277 IRETDDIVEKEGIKR----TFLEVENADLILLLKEINSKKEISFPK-------------- 318
                ++  KEG+++       E+E+AD +LL+ +   K E    +              
Sbjct: 128 FLH-HEMSVKEGVRKLLGEASSEMESADFVLLVVDAARKMEDDLRRTLVTLMFLALRSKG 186

Query: 319 NIDFIFIGTKSDLYS 333
             +F  +  K DL S
Sbjct: 187 RNEFAVVLNKVDLVS 201


>gi|93005198|ref|YP_579635.1| GTP-binding protein Era [Psychrobacter cryohalolentis K5]
 gi|92392876|gb|ABE74151.1| GTP-binding protein Era [Psychrobacter cryohalolentis K5]
          Length = 338

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 86/233 (36%), Gaps = 41/233 (17%)

Query: 209 QGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
               G +   G+K   + I+G  N GKS+L N L  + ++I +  P TTR  +   L  +
Sbjct: 25  SPNNGALAAEGFKTGYVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHRIHGILSND 84

Query: 266 GYLVKISDTAGI-RETDDIVEKEGIKRTFLEVENA--------------DLILLLKEINS 310
                  DT GI R     + +   K     + +               D +L+L+++  
Sbjct: 85  EMQAVFVDTPGIHRNEVRAINERMNKAAVSALVDVDLVLFVVDSDQWRDDDLLVLQKLGD 144

Query: 311 KKEISFPKNIDFIFIGTKSD----------LYSTYTEEYDH----LISSFTGEGLEELIN 356
                   N++ + +  K+D          L  T+ + +D      +S+   + L+ L  
Sbjct: 145 T-------NLNVVLVINKADTLKDKGSVLPLMETFNDSFDFADIVPVSALKNQNLDRLQE 197

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
            I S L            + +   +  S+ +R   M S  + +   D+ +  +
Sbjct: 198 VIASHLPVAAPIYDTEQITDRSERFLASEIIREKIMRSAGD-EVPYDLTVQID 249


>gi|302869290|ref|YP_003837927.1| GTP-binding protein Era [Micromonospora aurantiaca ATCC 27029]
 gi|315504235|ref|YP_004083122.1| gtp-binding protein era [Micromonospora sp. L5]
 gi|302572149|gb|ADL48351.1| GTP-binding protein Era [Micromonospora aurantiaca ATCC 27029]
 gi|315410854|gb|ADU08971.1| GTP-binding protein Era [Micromonospora sp. L5]
          Length = 298

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 81/223 (36%), Gaps = 23/223 (10%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
                   R G+    +G  NAGKS+L NA+    +AI ++ P TTR ++   L      
Sbjct: 2   TTPEARPYRAGF-ACFVGRPNAGKSTLTNAIVGTKIAITSNKPQTTRHIIRAVLHRPDSQ 60

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNI 320
           + + DT G+     ++ +             D+I L    N                   
Sbjct: 61  LVLVDTPGLHRPRTLLGERLNDLVRETWSEVDVIGLCVPANEPVGRGDRFITGELASLKA 120

Query: 321 DFIFIGTKSDL------------YSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367
             + + TK+DL             S   E  D   +S+ +G  ++ L++ +   L    +
Sbjct: 121 TVLAVVTKTDLVDKKRLAEQLLAVSELGEFADVVPVSAVSGHQVDTLVDVMTGYLPPSPQ 180

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL 409
             P  + +       +++ VR   +  + +E    + ++ E +
Sbjct: 181 LYPDDMLTDDPEQVLVAELVREAALEGVRDELPHSIAVVVEEM 223


>gi|253991552|ref|YP_003042908.1| GTPase HflX [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638430|emb|CAR67052.1| gtp-binding protein hflx [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783002|emb|CAQ86167.1| gtp-binding protein hflx [Photorhabdus asymbiotica]
          Length = 426

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 100/279 (35%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ + 
Sbjct: 114 RARTHEGKLQVELAQLRHLSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDKIR 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL   + +     QG+      +   + ++G++NAGKSSLFN +   +V    D    T
Sbjct: 173 QILSRLSRVEKQREQGRQARNKADIPTVSLVGYTNAGKSSLFNCMTSAEV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     ++++      ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIEVDDVGTAVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAVDNRI 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 ++S  E      I  + +  K D+   +T   D           +S+ TGEG+ 
Sbjct: 292 DENIAAVDSVLEEIDAHEIPVLLVMNKIDMLGDFTPRIDRNEDNLPVRVWLSARTGEGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            L+  +   LS +       +P      R  ++  Q + 
Sbjct: 352 LLLKALTERLSGEIAHYELRLPPEAGRLRSRFYQLQAIE 390


>gi|333029796|ref|ZP_08457857.1| GTP-binding proten HflX [Bacteroides coprosuis DSM 18011]
 gi|332740393|gb|EGJ70875.1| GTP-binding proten HflX [Bacteroides coprosuis DSM 18011]
          Length = 420

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 17/188 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + + + I FLK  +   I + K  +    G   ++ ++G++N GKS++ N LAK +
Sbjct: 175 EMDKRIIGDRISFLKKQLEK-IDRQKATQRKNRGRLIRVALVGYTNVGKSTIMNMLAKSE 233

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    D    T D     + +      +SDT G          +  K T  EV  ADL++
Sbjct: 234 V-FAEDKLFATLDTTVRKVVVGNLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLI 292

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY-TEEYDHLISSFTGEG 350
            + +I+        K            +     +  K D YS    +E D    +     
Sbjct: 293 HVVDISHPSFEDQIKVVNQTLADIDSSDKPTFLVFNKIDAYSYIKKDEDDLTPITRANWS 352

Query: 351 LEELINKI 358
           LEEL+N  
Sbjct: 353 LEELMNTW 360


>gi|319947868|ref|ZP_08022055.1| GTPase Era [Dietzia cinnamea P4]
 gi|319438474|gb|EFV93407.1| GTPase Era [Dietzia cinnamea P4]
          Length = 302

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 76/203 (37%), Gaps = 25/203 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI +  P TTR  +   +      + + D
Sbjct: 5   ENYRSGF-VSFVGRPNTGKSTLTNALVGEKIAITSAKPQTTRHAIRGIVHRSDAQIILVD 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFI 323
           T G+     ++ +           + DLI L      +          +          +
Sbjct: 64  TPGLHRPRTLLGERLNALVEDTYSDVDLIGLCIPAGERIGPGDRWILEQVRKLCPTTPLL 123

Query: 324 FIGTKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
            + TK D  S                 +     +S+ +GE ++ + + I S+L    +  
Sbjct: 124 GLVTKIDTVSKQKVMEQLVAVSELLGPDSEVVPVSAVSGEQVDVVADVIASLLPEGPQFY 183

Query: 370 PFSIPSHKRHLYHLSQTVRYLEM 392
           P  + + +     +++ +R   +
Sbjct: 184 PDDVVTEESDETRMAELIREAAL 206


>gi|15827260|ref|NP_301523.1| GTP-binding protein Era [Mycobacterium leprae TN]
 gi|221229738|ref|YP_002503154.1| GTP-binding protein Era [Mycobacterium leprae Br4923]
 gi|466988|gb|AAA17174.1| B1937_F3_102 [Mycobacterium leprae]
 gi|13092809|emb|CAC30139.1| putative Era-family GTP-binding protein [Mycobacterium leprae]
 gi|219932845|emb|CAR70724.1| putative Era-family GTP-binding protein [Mycobacterium leprae
           Br4923]
          Length = 302

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 72/197 (36%), Gaps = 26/197 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275
           R+G+ + ++G  N GKS+L NAL    VAI +  P TTR  +   +  EG + + + DT 
Sbjct: 7   RSGF-VCLIGRPNTGKSTLTNALVGTKVAITSMKPQTTRHTIRGIVHREGNFQIVLVDTP 65

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFI 325
           G+     ++ K             DLI L    +            +  S       + I
Sbjct: 66  GLHRPRTLLGKRLNDLVRDTYTEVDLIGLCIPADEATGPGDRWIVNQIRSVAPKTILVVI 125

Query: 326 GTKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            TK D                          +S+ TGE ++ LI+ + + L         
Sbjct: 126 VTKIDKVPKDRLSAQLVAVSDLVADSAEIVPVSAVTGEQVDVLIDVLAAALPPGPAYYSA 185

Query: 372 SIPSHKRHLYHLSQTVR 388
              + +     +++ +R
Sbjct: 186 GELTDEPEELLMAELIR 202


>gi|313837161|gb|EFS74875.1| GTP-binding protein HflX [Propionibacterium acnes HL037PA2]
 gi|314927817|gb|EFS91648.1| GTP-binding protein HflX [Propionibacterium acnes HL044PA1]
 gi|314971934|gb|EFT16032.1| GTP-binding protein HflX [Propionibacterium acnes HL037PA3]
 gi|328907281|gb|EGG27047.1| GTP-binding protein HflX [Propionibacterium sp. P08]
          Length = 483

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 41/255 (16%)

Query: 188 SSKEVLNDILFLKNDISSHISQ---GKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK- 242
           + +  +   + +      HI      K  + +R+    + I+G++NAGKSSL N L +  
Sbjct: 227 TDRRRIGHRIAVLRRRLKHIESTRASKRADRVRSKVPSVAIVGYTNAGKSSLLNRLTRAG 286

Query: 243 ---DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              + A+   +  TTR   T     +G +  ++DT G          E    T  E   A
Sbjct: 287 VLVENALFATLDPTTRRTTT----SDGRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMA 342

Query: 300 DLILLLKEINSKKEISF------------PKNIDFIFIGTKSD---------LYSTYTEE 338
           D++L + +      +                 I  + +  K D         L ST+ E 
Sbjct: 343 DVLLHVVDAADPDPVGQVDAVRAVLSGIGASAIPEVLVLNKIDRLSDDAIVALRSTFPEA 402

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS------HKRHLYHLSQTVRYLEM 392
           Y  L+S+ TGEG +ELI  +++ L    + +   IP        K H     + + +   
Sbjct: 403 Y--LVSAHTGEGTDELIEAVEADLPVPSQCVDAVIPYARGDLVDKIHRNGAIELIDHTAD 460

Query: 393 ASLNEKDCGLDIIAE 407
            +         + AE
Sbjct: 461 GTHVIAHLHPALAAE 475


>gi|21231170|ref|NP_637087.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768822|ref|YP_243584.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188991937|ref|YP_001903947.1| GTP-binding protein, probable [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112810|gb|AAM41011.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574154|gb|AAY49564.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733697|emb|CAP51902.1| GTP-binding protein, probable [Xanthomonas campestris pv.
           campestris]
          Length = 439

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 95/283 (33%), Gaps = 26/283 (9%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W          I        + +      ++ +  +      +   
Sbjct: 126 LAQLRHMATRLVRGWTHLERQRGGAIGLRGPGETQLETDRRLLQKRVEQLQKRLEKVEVQ 185

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +   +     +I ++G++NAGKS+LFNAL   D A   D    T D     + L G
Sbjct: 186 RTQMRRARMRSELPRIALVGYTNAGKSTLFNALTGAD-AYAADQLFATLDPTVRRIALPG 244

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEI 314
               ++DT G             + T  E  +ADL+L + +            ++   + 
Sbjct: 245 GSAVLADTVGFVRDLPHELVAAFRSTLSEARDADLLLHIVDAADPLREERIHQVDEVLQA 304

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSI 361
               ++  + +  K D        +D               IS+  G GLEEL   +   
Sbjct: 305 VGAGDLPQLLVFNKIDKIEGAEVRHDAQDGIPDQARRERVWISARDGRGLEELQRALGHR 364

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           L  +       +P+    L      +  +    ++E+   L++
Sbjct: 365 LDLRHITGSLRLPASAGRLRSKLHQLEVIRSEQVDEEGWLLEV 407


>gi|292669776|ref|ZP_06603202.1| GTP-binding protein Era [Selenomonas noxia ATCC 43541]
 gi|292648573|gb|EFF66545.1| GTP-binding protein Era [Selenomonas noxia ATCC 43541]
          Length = 297

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 31/214 (14%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G  N GKS+L NAL  + +AI++D P TTR  +   L  E   +   DT G+ +   
Sbjct: 10  AVIGRPNVGKSTLINALIGQKIAIMSDKPQTTRSRILCILTEEDAQIIFLDTPGVHKPKH 69

Query: 283 IVEKEGIKRTFLEVEN-------------------------ADLILLLKEINSKKEISFP 317
            +     K     +                           A + + +    +K +   P
Sbjct: 70  KLGSYMAKAAEGALHGVDVIVFVVDVTEKMGPGERYILKQLASVRVPVLLAVNKVD-CIP 128

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +      I   +     Y       IS+  GE L+ L+ +IK  L    +  P  + + +
Sbjct: 129 RAESLPVIANYA---KAYEFAGIVPISAREGENLDGLLAEIKKYLPEGPQYYPEDMVTDQ 185

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
                +++ VR  ++  L   +     +A ++  
Sbjct: 186 PERLIIAELVRE-KVLELTRDEIPHA-VAVDIEE 217


>gi|218904832|ref|YP_002452666.1| GTP-binding protein [Bacillus cereus AH820]
 gi|218535435|gb|ACK87833.1| GTP-binding protein [Bacillus cereus AH820]
          Length = 425

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 106/292 (36%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 81  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 140

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 141 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 200

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 201 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 259

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 260 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHIPIITLYNKK 319

Query: 330 D-LYST---YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D LY     + +    + S+F  + L  +   I++ +  +  +    IP  +
Sbjct: 320 DELYQNFIPFPKNDFLMTSAFEEKDLLHIKEAIETKMKGEMNRYQVEIPPSE 371


>gi|114567436|ref|YP_754590.1| GTPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114338371|gb|ABI69219.1| GTPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 375

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 28/203 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSSLFNALAKK 242
               + + + I  +K  +       +L +  R+      I ++G++NAGKSSLFNAL   
Sbjct: 171 ELDRRHIRSRIREIKRQMEKLEKTRELHKKQRHRAGYQVISLVGYTNAGKSSLFNALC-- 228

Query: 243 DVAIVTDIPGT--------TRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTF 293
            VA  +  P          T D  T  + L+  Y V I+DT G  +          + T 
Sbjct: 229 QVAHSSGQPQVEANRRLFQTLDTTTRKIKLDSHYEVLITDTVGFIQNLPHHLVAAFRSTL 288

Query: 294 LEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYT--EEY 339
            E   ADL+L + ++     +   K                + +  K DL +  +  +  
Sbjct: 289 EEAVAADLLLHVVDLADPAYLDKIKVVEGVLEELGAEKERIMPVFNKVDLLAGISPIQAP 348

Query: 340 DHLISSFTGEGLEELINKIKSIL 362
            + +S+ TG+G+EEL+ +IK+ L
Sbjct: 349 PNYVSARTGQGIEELLGQIKNRL 371


>gi|225619274|ref|YP_002720500.1| GTP-binding protein HflX [Brachyspira hyodysenteriae WA1]
 gi|225214093|gb|ACN82827.1| GTP-binding protein HflX [Brachyspira hyodysenteriae WA1]
          Length = 370

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 79/199 (39%), Gaps = 26/199 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
            +  +     I  LK+ +S        G   R N ++I I+G++NAGKS+LFN L K+ V
Sbjct: 166 EYDRRRARERIHKLKSQLSKVEKSASTGRKGRENTFRIAIVGYTNAGKSTLFNLLCKESV 225

Query: 245 AIVTDIPGTTRDVLTIDLDLEG---YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
             V D    T D  T  L L       V ISDT G  +          K T  EV  ADL
Sbjct: 226 -YVEDKLFATLDTHTRKLYLTDDTPVEVIISDTVGFIDRLPHTLVASFKSTLSEVVEADL 284

Query: 302 ILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTE-------EYDH 341
           +L L + + +             KEI    +I  I I  KSD      +       +   
Sbjct: 285 LLHLSDASDENIEEKLLHVESIIKEID-ASHIKRIVIFNKSDSIDEVQKNKILTSYDDAI 343

Query: 342 LISSFTGEGLEELINKIKS 360
            IS+     +E L  KI  
Sbjct: 344 FISAKNNTNIELLRKKILD 362


>gi|150402839|ref|YP_001330133.1| small GTP-binding protein [Methanococcus maripaludis C7]
 gi|150033869|gb|ABR65982.1| small GTP-binding protein [Methanococcus maripaludis C7]
          Length = 184

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 34/177 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI----------DLDLEGYLV 269
           +KI ++G  N+GKSSL N++  K+++ V+++ GTT+  +             ++ +   +
Sbjct: 6   FKIALVGPENSGKSSLVNSIFGKNISEVSEVGGTTKMPVKKFWGKIKIGKQKINPDFAKL 65

Query: 270 KISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------- 318
              D  G+   ++   ++    +++T+ E++++DLI+ + + ++    SF K        
Sbjct: 66  TFVDLGGLYAGENRSVVMVGSVLEKTYAEIDDSDLIIHIIDGSTDLFKSFEKLHHLLKFR 125

Query: 319 -NIDFIFIGTKSDLYSTYTEE------------YDHLISSFTGEGLEELINKIKSIL 362
                I +  K DL      E                 SS T EG+ EL++ I  IL
Sbjct: 126 YRKPIIVVINKCDLIENSKREDLRKYVEGRLENKVFFTSSTTYEGIGELLSTIIEIL 182


>gi|134046792|ref|YP_001098277.1| small GTP-binding protein [Methanococcus maripaludis C5]
 gi|132664417|gb|ABO36063.1| small GTP-binding protein [Methanococcus maripaludis C5]
          Length = 184

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 81/177 (45%), Gaps = 34/177 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI----------DLDLEGYLV 269
           +KI ++G  N+GKSS+ N++  K+++ V+++ GTT+  +             ++ +   +
Sbjct: 6   FKIALVGPENSGKSSIVNSIFGKNISEVSEVGGTTKMPVKKFWGKIKIGKQKINPDFAKI 65

Query: 270 KISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------- 318
              D  G+   ++   ++    +++T+ E++++DLI+ + + +S+   SF K        
Sbjct: 66  TFVDLGGLYAGENRSVVMVGSVLEKTYEEIDDSDLIIHIIDGSSELFKSFEKLHHLLKFR 125

Query: 319 -NIDFIFIGTKSDLYSTYTEE------------YDHLISSFTGEGLEELINKIKSIL 362
                I +  K DL      E                 SS T EG+ EL++ I  IL
Sbjct: 126 YRKPIIVVINKCDLIENSKREDLRKYVEGRLENKVFFTSSTTYEGIGELLSTIIEIL 182


>gi|91773828|ref|YP_566520.1| GTP-binding protein [Methanococcoides burtonii DSM 6242]
 gi|91712843|gb|ABE52770.1| GTP-binding domain protein [Methanococcoides burtonii DSM 6242]
          Length = 356

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 77/225 (34%), Gaps = 18/225 (8%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +N  L   ND  + + +      +R    IV+ G+ N GKSS  +         V   P 
Sbjct: 136 INKHLLFLNDARNIMRKFPD---VREEPTIVVAGYPNVGKSSFVSMATGA-RPEVASYPF 191

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD-LILLLKEINSK 311
           TT+ VL    +      ++ DT G+ +           +    +++ D ++L + + +  
Sbjct: 192 TTKGVLIGHFERGYDRYQVIDTPGLLDRPMSERNNVELQAITAIKHLDAVVLFILDASET 251

Query: 312 KEISFPKN------------IDFIFIGTKSDL-YSTYTEEYDHLISSFTGEGLEELINKI 358
                               +    +  K D       +  D  +S+ TGE L+ +++K+
Sbjct: 252 CGYEIADQKRLLDEVVANFEMPVYVVANKCDHDLFKIPDFVDAKMSTATGENLDSIVDKL 311

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
             ++    K+      +         +      + S    +  L+
Sbjct: 312 VEMVIETKKEKEAKEAAEVAARKLSEEMAEEAALLSEELDEADLE 356


>gi|302866049|ref|YP_003834686.1| GTP-binding proten HflX [Micromonospora aurantiaca ATCC 27029]
 gi|302568908|gb|ADL45110.1| GTP-binding proten HflX [Micromonospora aurantiaca ATCC 27029]
          Length = 487

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 28/200 (14%)

Query: 205 SHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKK----DVAIVTDIPGTTRDVLT 259
           + + Q K     RN    + I G++NAGKSSL N L       + A+   +  TTR   T
Sbjct: 239 ATVRQTKRARRTRNAVPAVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTTRRATT 298

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE---------INS 310
                +G L  +SDT G          E  + T  EV +ADL++ + +         + +
Sbjct: 299 ----SDGRLYTLSDTVGFVRHLPHQIVEAFRSTLEEVADADLVVHVVDGTHPDPEEQVRA 354

Query: 311 KKEISFPKNIDF---IFIGTKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKS 360
            +E+      D    + +  K+D     T             +S+ +G G++E+   ++ 
Sbjct: 355 VREVLAEVGADRLPELLVVNKTDATDEETMLRLKRLWPDAVFVSAHSGRGIDEMREAVER 414

Query: 361 ILSNKFKKLPFSIPSHKRHL 380
            L     ++   +P  +  L
Sbjct: 415 RLPRPAVEVRAVLPYDRGDL 434


>gi|295689384|ref|YP_003593077.1| GTP-binding proten HflX [Caulobacter segnis ATCC 21756]
 gi|295431287|gb|ADG10459.1| GTP-binding proten HflX [Caulobacter segnis ATCC 21756]
          Length = 446

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 85/207 (41%), Gaps = 29/207 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSSLFNALAKK 242
               + +   I+ LK ++        L    R       + ++G++NAGKS+LFN L + 
Sbjct: 177 EIDRRLIAGTIIKLKRELEEVRRTRTLHRSARKKVPYPTVALVGYTNAGKSTLFNRLTEA 236

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V +  D+   T D     + L +G    +SDT G          E  + T  EV+ AD+
Sbjct: 237 EV-LAKDMLFATLDPTLRTVKLPDGRPAIMSDTVGFISDLPHELVEAFRATLEEVQEADV 295

Query: 302 ILLLKEINSKKEISFPKNIDFIF---------------IGTKSDLYSTYTEEYDHLI--- 343
           +L ++++ +    +  ++++ +                +  K DL S    E        
Sbjct: 296 VLHVRDVANPDSEAQARDVETVLSELGVTLDGGKTVVEVWNKIDLLSEDDREIIEGQARR 355

Query: 344 ------SSFTGEGLEELINKIKSILSN 364
                 S+ TGEG E L+ ++  ++ +
Sbjct: 356 VGASPVSAVTGEGCEALLRRVGGLIDD 382


>gi|305681495|ref|ZP_07404302.1| GTP-binding protein Era [Corynebacterium matruchotii ATCC 14266]
 gi|305659700|gb|EFM49200.1| GTP-binding protein Era [Corynebacterium matruchotii ATCC 14266]
          Length = 305

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 29/204 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  + P TTR  +   +  +   + + D
Sbjct: 8   EGFRSGF-MCFVGRPNTGKSTLTNALVGQKIAITANQPETTRHPIRGIVHRDDAQIIVVD 66

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFI 323
           T G+     ++ +   +       + DLI +    + K                     +
Sbjct: 67  TPGLHRPRTLLGERLNEVVKDTYADMDLIAITIPADEKIGPGDRWILDNVRKVAPKTPLM 126

Query: 324 FIGTKSD-------------LYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFKKL 369
            I TK D             L+    E+ +   +S+ TGE  + L++ I S+L    K  
Sbjct: 127 GIITKIDKVSRDQVALQLMALHKLLGEDSEVVPVSAVTGEQRDILLDVITSLLPEGPKFY 186

Query: 370 PFSIP----SHKRHLYHLSQTVRY 389
           P        ++ R    + +    
Sbjct: 187 PDDHVTDDDTNTRIAELVREAALS 210


>gi|170729308|ref|YP_001774741.1| GTP-binding protein [Xylella fastidiosa M12]
 gi|167964101|gb|ACA11111.1| GTP-binding protein [Xylella fastidiosa M12]
          Length = 450

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 100/306 (32%), Gaps = 29/306 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           +   E + ++ +  +    + L   W          I        + +      ++ +  
Sbjct: 115 ACSHEGKLQVELAQLRHLATRLVRGWTHLERQRGGAIGLRGPGETQLETDRRLLQKRVEQ 174

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +    + +    +Q +   +     +I ++G++N+GKS+LFNAL     A   D    T 
Sbjct: 175 LQKRLSKVEVQRTQMRRARVRSEVPRIALVGYTNSGKSTLFNALTGAS-AYTADQLFATL 233

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           D     + L G    ++DT G             + T  E   ADL+L + +        
Sbjct: 234 DPKVRRIVLPGSSAMLADTVGFVRHLPHELVAAFRSTLSEAREADLLLHVIDAADPLREE 293

Query: 316 FPKNIDFI------------FIGTKSDLYSTYTEEYD-------------HLISSFTGEG 350
               +D +             +  K D         D               +S+  G G
Sbjct: 294 RIDQVDEVLQAIGAGELPQLLVFNKIDCIEGAEVRQDAQDGIPDQARRERVWLSARHGHG 353

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DI-IAE 407
           +E L   +   L  +  +    +   +  L      ++ +     +E    L  D+ +AE
Sbjct: 354 VELLQQVLDHRLKMQNVQSELRLLPSEGRLRARLHELKGVREEQTDEHGWLLKIDLSLAE 413

Query: 408 NLRLAS 413
             RLA+
Sbjct: 414 IERLAA 419


>gi|145590303|ref|YP_001152305.1| small GTP-binding protein [Pyrobaculum arsenaticum DSM 13514]
 gi|145282071|gb|ABP49653.1| small GTP-binding protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 381

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 78/202 (38%), Gaps = 33/202 (16%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-------IVILGHSNAGKSSLFNA 238
            +        ++   + I   + + K G ++    +       +V+ G+++AGK++LFN 
Sbjct: 145 EYVIDSYYRHMVRRISSIKKRLEEAKKGRVMHIKKRKEAGVPEVVLTGYTSAGKTTLFNR 204

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L  ++  IV   P  T +  +  LD+ G  V ++DT G  +    V  E    T  E+ +
Sbjct: 205 LVSENK-IVDGRPFATLETYSRALDIWGKRVVLTDTIGFIDDLPPVLIESFHSTLQEIID 263

Query: 299 ADLILLLKEINSKKEISFPK--------------NIDFIFIGTKSDLY--------STYT 336
           AD ILL+ + +   E    K                  I I  K D              
Sbjct: 264 ADRILLVIDGSEPYEEVARKISTSVRTLGEVGVDRSKIIPIVNKVDKIRLEELRNLRKVL 323

Query: 337 EEYDHLI---SSFTGEGLEELI 355
           E+Y       S+ TG G+E L 
Sbjct: 324 EKYFTWFVPVSALTGFGIEALK 345


>gi|119025741|ref|YP_909586.1| GTP-binding protein Era [Bifidobacterium adolescentis ATCC 15703]
 gi|154487437|ref|ZP_02028844.1| hypothetical protein BIFADO_01289 [Bifidobacterium adolescentis
           L2-32]
 gi|118765325|dbj|BAF39504.1| widely conserved GTP-binding protein [Bifidobacterium adolescentis
           ATCC 15703]
 gi|154083955|gb|EDN83000.1| hypothetical protein BIFADO_01289 [Bifidobacterium adolescentis
           L2-32]
          Length = 332

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 81/218 (37%), Gaps = 16/218 (7%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           S  +     R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L  +  
Sbjct: 14  SDAEAPVPYRSGF-VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNA 72

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNIDFIF 324
            + + DT GI     ++ +         + + D I  L   + +    +      +   F
Sbjct: 73  QIVLVDTPGIHRPRTLLGQRLNDVVDESLSDVDAIAFLLPADQEIGPGDKRILSRLRSDF 132

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
              + D    +      +++         LI+K+  I  N+F      +P       +L+
Sbjct: 133 AVKRDDGTFKWKVPLIAIVTKIDELDRSALIDKLIEI--NEFADFTDIVPVSALEHDNLA 190

Query: 385 QTVRYLEM----------ASLNEKDCGLDIIAENLRLA 412
           +    L            A    ++   D IAE +R A
Sbjct: 191 EVRNVLVENMPEGPQMYPAEQITEERPEDTIAELIRGA 228


>gi|254440407|ref|ZP_05053901.1| GTP-binding protein Era [Octadecabacter antarcticus 307]
 gi|198255853|gb|EDY80167.1| GTP-binding protein Era [Octadecabacter antarcticus 307]
          Length = 313

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 15  RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAIEGDSQIVFVDTPG 73

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           + +    +++  +   +  V ++D+++L+ E 
Sbjct: 74  LFQPKRRLDRAMVAAAWSGVSDSDVVVLMIEA 105


>gi|15678878|ref|NP_275995.1| GTP1/OBG family GTP-binding protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621950|gb|AAB85356.1| GTP-binding protein, GTP1/OBG family [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 336

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 75/177 (42%), Gaps = 22/177 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           + + +VI G  N GKS+L   L   +   V D P TT+ +    L+ +   +++ DT G+
Sbjct: 161 DAFTVVIAGFPNVGKSTLLRTLTGAE-PEVADYPFTTKGIQIGHLERKWKRIQVIDTPGL 219

Query: 278 RETDDIVEKEGIKRTFLEVEN-ADLILLLKEINSKKEISFPKNIDFIF------------ 324
            +           +  + +EN AD+I+ + + +     +                     
Sbjct: 220 LDRPVEDMNNIELQAMVALENIADVIMFIFDASETCGYTLESQYSLYLGIRSVFDIPVVT 279

Query: 325 IGTKSDLYS--TYTEEYDHL------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           +  K DL     Y EEY ++      +S+F G G+ ++I K++ +   + ++   ++
Sbjct: 280 VFNKMDLAENVKYLEEYINMVEDPLKVSAFEGRGVSKIIKKLEGLYEKETREAHDNV 336


>gi|291562528|emb|CBL41344.1| ferrous iron transporter FeoB [butyrate-producing bacterium SS3/4]
          Length = 665

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 71/190 (37%), Gaps = 23/190 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             +  +G+ N GK++LFNA     +  V + PG T + +  +   +G  +++ DT GI  
Sbjct: 8   ITVCFVGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERMEGETSYKGRKIRVIDTPGIYS 66

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                 +E + R  +E +  D+I+ + + +S +                I      D+  
Sbjct: 67  LTSYTMEELVTRRCIEEDGVDVIVNVVDASSLERNLYLTMQLLELKKPVILALNMMDIIE 126

Query: 334 TYTEEYDHLI-------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               E D                S+    GL+ L++    ++ +  +     I  + R +
Sbjct: 127 ERGMEIDLHRLPEMLGGIPVVPVSARKRTGLDVLMHA---VVHHYEEGPQGVIVRYDREI 183

Query: 381 YHLSQTVRYL 390
               Q V  L
Sbjct: 184 EDRIQRVEDL 193


>gi|261209769|ref|ZP_05924075.1| GTP-binding protein HflX [Vibrio sp. RC341]
 gi|260841185|gb|EEX67695.1| GTP-binding protein HflX [Vibrio sp. RC341]
          Length = 429

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 118/344 (34%), Gaps = 53/344 (15%)

Query: 70  PSPESFTGE----DSAE-FHVHGGIAVV-NGIL-----EELAKMPNLRLANPGEFSRRAF 118
           P P+ F GE    + AE   +HG   V+ N  L       L ++   R+ +        F
Sbjct: 52  PHPKYFVGEGKAQEIAEAVQMHGANVVIFNHALSPAQERNLERLCQCRVIDRTGLILDIF 111

Query: 119 ENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
                             + T E + ++ +  +    + L   W   L   +  I     
Sbjct: 112 AQ---------------RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGP 155

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
              + +      +E +  IL     ++    QG+          I ++G++NAGKS+LFN
Sbjct: 156 GETQLETDRRLLRERIKAILRRLEKVAKQREQGRRARSRAEIPTISLVGYTNAGKSTLFN 215

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEV 296
            + +  V    D    T D     +DL       ++DT G             K T  E 
Sbjct: 216 RITEAGV-YAADQLFATLDPTLRKIDLADVGPAVLADTVGFIRHLPHDLVAAFKATLQET 274

Query: 297 ENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYD--- 340
           + AD++L + + + +             +EI     +  + +  K D    +    +   
Sbjct: 275 QEADILLHVVDASDERFRENIQAVETVLQEID-AHEVPTLLVMNKIDNLEEHAPRIERDD 333

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                   IS+  G G+E L   +   L+++  +    IP   +
Sbjct: 334 EGVPRVVWISAMQGTGIELLFEALSERLASQVVEHNLRIPPRHQ 377


>gi|300870023|ref|YP_003784894.1| GTP-binding HSR1-like protein [Brachyspira pilosicoli 95/1000]
 gi|300687722|gb|ADK30393.1| GTP-binding protein, HSR1-related protein [Brachyspira pilosicoli
           95/1000]
          Length = 366

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 63/259 (24%), Positives = 93/259 (35%), Gaps = 28/259 (10%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           + ++T   R                     L+ +R  I       E++    +  +    
Sbjct: 112 MRAKTLTARMQVELAFLEFEYPRLKGKRSNLSQVRGVIGLRGGAGEKQL--EYDRRRARE 169

Query: 195 DILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
            I  LK  +S        G   R + ++I I+G++NAGKS+LFN L K+D   V D    
Sbjct: 170 RIHKLKTQLSKVEKSASTGRKGRGSTFRIAIVGYTNAGKSTLFNLLCKED-TYVEDKLFA 228

Query: 254 TRDVLTIDLDL-EGYLV--KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           T D  T  L L +   V   ISDT G  +          K T  EV  ADL+L L +   
Sbjct: 229 TLDTHTRKLYLSDDAPVEAIISDTVGFIDRLPHTLIASFKSTLSEVVEADLLLHLVDSTD 288

Query: 311 K-------------KEISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLISSFTGEG 350
           +             KEI    NI  I +  K D      +       +    IS+     
Sbjct: 289 EYIEEKLINVEATIKEIE-ASNIKRIMVFNKVDSLEENQKNKILTMYDDAIFISAKNNIN 347

Query: 351 LEELINKIKSILSNKFKKL 369
           ++ L  KI  I+   F   
Sbjct: 348 IDILREKILKIILESFNNG 366


>gi|257468027|ref|ZP_05632123.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185]
 gi|317062313|ref|ZP_07926798.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687989|gb|EFS24824.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185]
          Length = 404

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 14/148 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I I G +NAGKSSL N +  +++++V+D+ GTT D +   ++L     V   DTAG
Sbjct: 8   NRVHIAIFGRTNAGKSSLINCITNQNISLVSDVKGTTTDPVYKAMELLPIGPVVFIDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNI---------DFIF 324
           I +   I     I++T   ++  D+ +L+    +    + +SF +            FI 
Sbjct: 68  IDDISAIGALR-IEKTTEVLDKMDISILVISAETILEDEILSFEQEWIKKIKDKKKPFIA 126

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           +  K D+     +  +    +    G++
Sbjct: 127 VLNKIDIVKDKEDFKEKASKAEKKLGID 154


>gi|163736360|ref|ZP_02143779.1| GTP-binding protein, HSR1-related [Phaeobacter gallaeciensis BS107]
 gi|161390230|gb|EDQ14580.1| GTP-binding protein, HSR1-related [Phaeobacter gallaeciensis BS107]
          Length = 423

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 28/219 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   ++ L+  +   +    L    R       + ++G++NAGKS+LFN L   
Sbjct: 166 EADRRAIDEQLVRLRRQLDKVVKTRTLHRAARAKIPYPIVALVGYTNAGKSTLFNRLTGA 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V    D+   T D     + L +G  + +SDT G             + T  EV  AD+
Sbjct: 226 EVM-AKDMLFATLDPTMRRVQLPDGPEIILSDTVGFISDLPTELVAAFRATLEEVLAADV 284

Query: 302 ILLLKEINSKKEISFPKNIDFIF-------------IGTKSDLYS----------TYTEE 338
           ++ +++I+  +  +   +++ I              +  K DL               E+
Sbjct: 285 VVHVRDISHDETQNQAADVESILASLGVDDSRARLEVWNKLDLLDDEQAEARRQRAERED 344

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
             H IS+ +GEGLE+L+  I S L     +   ++   +
Sbjct: 345 GIHAISAISGEGLEDLLADITSQLRLIRHEDEITLTFAQ 383


>gi|160878692|ref|YP_001557660.1| GTP-binding proten HflX [Clostridium phytofermentans ISDg]
 gi|160427358|gb|ABX40921.1| GTP-binding proten HflX [Clostridium phytofermentans ISDg]
          Length = 420

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 101/273 (36%), Gaps = 21/273 (7%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L G   + L+ +   I       ++ ++     K+ +  +    +DI  +
Sbjct: 130 LAQLKYRATRLIG-MRNSLSRLGGGIGTRGPGEKKLEIDRRLIKDRIAQLNRELDDIKRN 188

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE- 265
               +   +      + I+G++NAGKS+L N L + DV +  ++   T D  T +L LE 
Sbjct: 189 REVARSLRMKNPIPVVAIVGYTNAGKSTLLNRLTEADV-LEANMLFATLDPTTRNLSLES 247

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------- 318
           G  V ++DT G          +  + T  E + AD+I+ + + ++ +             
Sbjct: 248 GQQVLLTDTVGFIRKLPHHLIDAFRSTLEEAKYADIIIHVVDASNPQAYKQMHIVYETLK 307

Query: 319 -----NIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                +   I +  K DL            +    IS+  G G+ EL++ I+ +L     
Sbjct: 308 KLQVTDKTVITVFNKQDLVQEEEPMKDLKADKTVKISAKQGVGVVELLDIIEEVLREAKV 367

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
            +       +     L +    L      E   
Sbjct: 368 LIEHIFSYQEAGSIQLIRKYGQLLEEEYQEGGI 400


>gi|163785530|ref|ZP_02180109.1| GTP-binding protein HflX [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879202|gb|EDP73127.1| GTP-binding protein HflX [Hydrogenivirga sp. 128-5-R1-1]
          Length = 234

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 82/216 (37%), Gaps = 32/216 (14%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG----YKIVILGHSNAGKSSLFN 237
           E +     + +   I  +K ++     Q       RN      K+ ++G++NAGKSSL N
Sbjct: 15  EKLGEIKVRRIKERIAKIKKELEYIKKQRYQQRKWRNKDINLLKVALVGYTNAGKSSLLN 74

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLE 295
            L K++ A +++    T D  T  +        V I+DT G  +       +    T  E
Sbjct: 75  RLTKRE-AFISNQLFATLDTKTSYIVFPDINKKVVITDTVGFVKDMPKEIMDAFMATLEE 133

Query: 296 VENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYD--- 340
           VE ADLIL + +++ +      +            +   + +  K D      E  D   
Sbjct: 134 VEEADLILHVVDVSDENWQEKLEAVEKILKKIKVDHKPAVVVLNKVDKLVPSPEFLDESQ 193

Query: 341 ----------HLISSFTGEGLEELINKIKSILSNKF 366
                       IS+  G  L++L+  +K   S K 
Sbjct: 194 EHILTGNKETITISTEKGWNLDKLMEILKKYASEKN 229


>gi|322831157|ref|YP_004211184.1| GTP-binding proten HflX [Rahnella sp. Y9602]
 gi|321166358|gb|ADW72057.1| GTP-binding proten HflX [Rahnella sp. Y9602]
          Length = 434

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 98/281 (34%), Gaps = 32/281 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + + +
Sbjct: 114 RARTHEGKLQVELAQLRHIATRLVRGW----THLERQGGGIGARGPGETQLETDRRLLRD 169

Query: 195 DILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  + + +     Q + G   R   +   + ++G++NAGKS+LFN + + DV +   + 
Sbjct: 170 RITLILSRLEKVAKQREQGRRSRVRADIPTVSLVGYTNAGKSTLFNRITQADVYVANQLF 229

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE---- 307
            T    L   +  +     ++DT G             K T  E   A L+L + +    
Sbjct: 230 ATLDPTLRRIIVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQASLLLHVIDAADI 289

Query: 308 --------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEG 350
                   +N+         I  + +  K D+   +    D           +S+ TGEG
Sbjct: 290 RVQENIDAVNTVLAEIEADEIPALLVMNKIDMLDDFVPRIDRNEENLPVRVWLSAVTGEG 349

Query: 351 LEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
           +  L   +   LS +  +    +P      R  ++  Q + 
Sbjct: 350 IPLLFQALTERLSGEIAQHELCLPPEAGRLRSRFYQLQAIE 390


>gi|240172991|ref|ZP_04751649.1| GTP-binding protein Era [Mycobacterium kansasii ATCC 12478]
          Length = 303

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 78/209 (37%), Gaps = 28/209 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + ++G  N GKS+L NAL    VAI +  P TTR  +   +  E + + + DT G
Sbjct: 6   RSGF-VCLVGRPNTGKSTLTNALVGAKVAITSMRPQTTRHTIRGIVHRENFQIILVDTPG 64

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           +     ++ K             D+I L    +           ++  S       + I 
Sbjct: 65  LHRPRTLLGKRLNDLVRATYAEVDVIGLCIPADEAIGPGDRWILEQIRSVAPGTTLVVIV 124

Query: 327 TKSD----------------LYSTYTEEYDH-LISSFTGEGLEELINKIKSILSNKFKKL 369
           TK D                L        +   +S+ TG  ++ L++ +   L       
Sbjct: 125 TKIDKVPKDRVAAQLVAVGELVENLPGSTEIVPVSAVTGAQVDVLVDVLAGALPPGPAYY 184

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           P    + +     +++ +R   +  ++++
Sbjct: 185 PDGELTDEPEEVLMAEFIREAALEGVHDE 213


>gi|163741105|ref|ZP_02148497.1| GTP-binding protein HflX [Phaeobacter gallaeciensis 2.10]
 gi|161385458|gb|EDQ09835.1| GTP-binding protein HflX [Phaeobacter gallaeciensis 2.10]
          Length = 423

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 28/219 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   ++ L+  +   +    L    R       + ++G++NAGKS+LFN L   
Sbjct: 166 EADRRAIDEQLVRLRRQLDKVVKTRTLHRAARAKIPYPIVALVGYTNAGKSTLFNRLTGA 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V    D+   T D     + L +G  + +SDT G             + T  EV  AD+
Sbjct: 226 EVM-AKDMLFATLDPTMRRVQLPDGPEIILSDTVGFISDLPTELVAAFRATLEEVLAADV 284

Query: 302 ILLLKEINSKKEISFPKNIDFIF-------------IGTKSDLYS----------TYTEE 338
           ++ +++I+  +  +   +++ I              +  K DL               E+
Sbjct: 285 VVHVRDISHDETQNQAADVESILASLGVDDSRARLEVWNKLDLLDDEQAEARRQRAERED 344

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
             H IS+ +GEGLE+L+  I S L     +   ++   +
Sbjct: 345 GIHAISAISGEGLEDLLADITSQLRLIRHEDEITLTFAQ 383


>gi|262373437|ref|ZP_06066715.1| GTP-binding protein HflX [Acinetobacter junii SH205]
 gi|262311190|gb|EEY92276.1| GTP-binding protein HflX [Acinetobacter junii SH205]
          Length = 449

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 97/263 (36%), Gaps = 28/263 (10%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + T E + ++ +  +    + L   +   L   +  I         E       + + 
Sbjct: 114 LRARTHEGKLQVELAQLKHLSTRLIRGFTGNLEQQKGGIGLR---GPGESQLETDRRLIR 170

Query: 194 NDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             I  LK+ +         G   R       I ++G++NAGKS+LFN LAK DV    D 
Sbjct: 171 VRITQLKDKLVKVQQTRLQGRAARQKAAIPTISLVGYTNAGKSTLFNILAKSDV-YAADQ 229

Query: 251 PGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D     L+ +G   V ++DT G          E  K T  E   A L+L + + N
Sbjct: 230 LFATLDPTLRRLEWDGIGTVVLADTVGFVRNLQHDLVESFKATLEETLEATLLLHVIDSN 289

Query: 310 SK---KEISFPK--------NIDFIFIGTKSDLYSTYTEEY--------DHLISSFTGEG 350
           S    ++I   +        +   + +  K DL     +             +S+ +G+G
Sbjct: 290 SPNMDEQIEAVESVLKEIGADAPILHVYNKIDLSGDAAKIIYKAPDVPDRVYVSAHSGQG 349

Query: 351 LEELINKIKSILSNKFKKLPFSI 373
           LE L   ++  L  + +     +
Sbjct: 350 LELLSQAVQQCLMGQLQHFDLVL 372


>gi|197105188|ref|YP_002130565.1| GTP-binding protein HflX [Phenylobacterium zucineum HLK1]
 gi|196478608|gb|ACG78136.1| GTP-binding protein HflX [Phenylobacterium zucineum HLK1]
          Length = 424

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 95/257 (36%), Gaps = 28/257 (10%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T   R    +  ++ E S L   W         F         + +       E + 
Sbjct: 107 RARTREGRLQVELARLTYERSRLVRTWTHLERQRGGFGVMGGPGETQIETDRRLLAEKIG 166

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +     ++    +  +          + ++G++NAGKS+LFN L + +V +  D+   T
Sbjct: 167 KLKRELVEVRRTRTLQRSARRRVPYPTVALVGYTNAGKSTLFNRLTQAEV-LAQDMLFAT 225

Query: 255 RDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L +G    +SDT G          E  + T  EV  AD++L +++I S++ 
Sbjct: 226 LDPTLRMLKLPDGRPAILSDTVGFISDLPHELVEAFRATLEEVREADVVLHVRDIASEET 285

Query: 314 ISFPKNIDFIF--------------IGTKSDLYST-----------YTEEYDHLISSFTG 348
            +  +++  +               +  K DL                     L+S+ TG
Sbjct: 286 EAQAQDVRTVLQRLGVDMDERRILEVWNKVDLLPADERQDAAGDARRAHPPAILVSAVTG 345

Query: 349 EGLEELINKIKSILSNK 365
           EG ++L+  + +++   
Sbjct: 346 EGCDDLLRAVGALVDEA 362


>gi|156381162|ref|XP_001632135.1| predicted protein [Nematostella vectensis]
 gi|156219186|gb|EDO40072.1| predicted protein [Nematostella vectensis]
          Length = 383

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 15/126 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N+GKS+L N L  + +  VT+ P TTR V        G  + + DT G+  
Sbjct: 81  LKVAIIGEPNSGKSTLINQLVGEKIVAVTEKPHTTRQVSRGVFTSGGTQIILLDTPGLVT 140

Query: 280 TDDIVEKEGIKRTFL----EVENADLILLLKEINSK-----------KEISFPKNIDFIF 324
             +    +  +         +++AD+I ++ + ++K           + +    NI    
Sbjct: 141 QSEGKRLKMTREHIKAPGDALDDADIIGVICDASNKRTRDRIHQQVLQALEQHVNIPSFL 200

Query: 325 IGTKSD 330
           I  K D
Sbjct: 201 ILNKID 206


>gi|170728494|ref|YP_001762520.1| GTP-binding proten HflX [Shewanella woodyi ATCC 51908]
 gi|169813841|gb|ACA88425.1| GTP-binding proten HflX [Shewanella woodyi ATCC 51908]
          Length = 432

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 112/304 (36%), Gaps = 27/304 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 114 RARTYEGKLQVELAQLRHMSTRLIRGWTH-LERQKGGIGMRGPGETQLETDRRLLRGRIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I      +     Q +      +   + ++G++NAGKS+LFN+L   DV    D    T
Sbjct: 173 NINKRLAKVDKQREQSRRARRRSDLATVSLVGYTNAGKSTLFNSLTTSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
            D     LDL+   + ++DT G             K T  E   ADL+L + + + +   
Sbjct: 232 LDPTLRKLDLDDGSIILADTVGFIRHLPHDLVAAFKATLQETREADLLLHIVDCHDENMG 291

Query: 312 ---KEISF------PKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEE 353
              +++         ++I  + +  K DL      + D+          +S+   +GL  
Sbjct: 292 DNFEQVQLVLKEIGAEDIPQLIVCNKIDLLDEVNPKIDYDDEGVPIRVWVSAQKQQGLVL 351

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA- 412
           L   I SI+      L   IP+   H  +L Q  R   +      D G  I++  +  A 
Sbjct: 352 LKEAINSIVGKTTLSLNLEIPATAGH--YLGQLYRLDVIQQKEYDDLGNCILSVRILEAD 409

Query: 413 SVSL 416
              L
Sbjct: 410 WRRL 413


>gi|315453296|ref|YP_004073566.1| GTP-binding protein ERA-like protein [Helicobacter felis ATCC
           49179]
 gi|315132348|emb|CBY82976.1| GTP-binding protein ERA homolog [Helicobacter felis ATCC 49179]
          Length = 297

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 10/119 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           I ++G  NAGKS+L NAL  + +A+ +     TR  L   +   D +G    +   DT G
Sbjct: 7   IALIGRPNAGKSTLLNALVNEHLALTSHKAHATRKALKAIVPYTDSQGNACQMVFVDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSD 330
           I     ++E+   + +   +++ DL+L L  ++         +SF      I    K D
Sbjct: 67  IASPKKLLEQAMQEESMRALQDCDLVLFLASVHDDLRDYENFLSFASTKPHILALNKID 125


>gi|255030306|ref|ZP_05302257.1| GTP-binding protein Era [Listeria monocytogenes LO28]
          Length = 285

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           N GKS+L N +  + +AI++D   TTR+ +      +   +   DT GI +    +    
Sbjct: 1   NVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPKHKLGDFM 60

Query: 289 IKRTFLEVENADLILLLKEIN------SKKEISFPKN--IDFIFIGTKSDLYS 333
           +K      +  DLI  + + +       +  I   KN       +  K DL +
Sbjct: 61  VKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKIDLIA 113


>gi|289207682|ref|YP_003459748.1| GTP-binding proten HflX [Thioalkalivibrio sp. K90mix]
 gi|288943313|gb|ADC71012.1| GTP-binding proten HflX [Thioalkalivibrio sp. K90mix]
          Length = 441

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 94/284 (33%), Gaps = 29/284 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W   L   +  I        + +         +  I      +   
Sbjct: 128 LAQLRHMATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLAARIKHIERRLEKVERT 186

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
             QG+   +      + ++G++NAGKS+LFN L   DV     +   T D     LDL  
Sbjct: 187 REQGRQARLRNEIPTVSLVGYTNAGKSTLFNRLTHSDVYEADQLFA-TLDPTLRRLDLAP 245

Query: 267 YL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------- 318
           +  + ++DT G             K T  E   A L+L + +    +  +  +       
Sbjct: 246 HQSLILADTVGFVRDLPHELVAAFKATLTETREAALLLHVIDAADPEREARIRQVEAVLE 305

Query: 319 -----NIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLEELINKIK----S 360
                ++    +  K D   +  +  +           +S++TGEG+  L   +      
Sbjct: 306 EIGAQDVPCWRVYNKIDRLESTPDAAEARFGSGDDVFWVSAYTGEGIATLEEHLAETFTE 365

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
            +   + +LP S     R   +  + V   +  +  +    L +
Sbjct: 366 SMMRGWVELPAS-AGRLRAQLYEEKAVEAEQTTADGQIQLRLSL 408


>gi|221504855|gb|EEE30520.1| GTP-binding protein erg, putative [Toxoplasma gondii VEG]
          Length = 413

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I ++G  NAGKSSL NAL  + ++ V+    TTR  +   +  +   +   D  GI E
Sbjct: 78  LRIALIGPPNAGKSSLLNALLGQKLSAVSPKVNTTRSEIRGIITQDDTQLVFLDVPGIVE 137

Query: 280 TDDIVE--KEGIKRTFLEVENADLILLLKEI 308
           +    +  +E +   +   E+AD+ LL+ + 
Sbjct: 138 SHRNKKFCRELVSTAWRGFEDADVALLVIDA 168


>gi|221484671|gb|EEE22965.1| GTP-binding protein era, putative [Toxoplasma gondii GT1]
          Length = 413

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I ++G  NAGKSSL NAL  + ++ V+    TTR  +   +  +   +   D  GI E
Sbjct: 78  LRIALIGPPNAGKSSLLNALLGQKLSAVSPKVNTTRSEIRGIITQDDTQLVFLDVPGIVE 137

Query: 280 TDDIVE--KEGIKRTFLEVENADLILLLKEI 308
           +    +  +E +   +   E+AD+ LL+ + 
Sbjct: 138 SHRNKKFCRELVSTAWRGFEDADVALLVIDA 168


>gi|237839985|ref|XP_002369290.1| hypothetical protein TGME49_086640 [Toxoplasma gondii ME49]
 gi|211966954|gb|EEB02150.1| hypothetical protein TGME49_086640 [Toxoplasma gondii ME49]
          Length = 413

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I ++G  NAGKSSL NAL  + ++ V+    TTR  +   +  +   +   D  GI E
Sbjct: 78  LRIALIGPPNAGKSSLLNALLGQKLSAVSPKVNTTRSEIRGIITQDDTQLVFLDVPGIVE 137

Query: 280 TDDIVE--KEGIKRTFLEVENADLILLLKEI 308
           +    +  +E +   +   E+AD+ LL+ + 
Sbjct: 138 SHRNKKFCRELVSTAWRGFEDADVALLVIDA 168


>gi|167753920|ref|ZP_02426047.1| hypothetical protein ALIPUT_02205 [Alistipes putredinis DSM 17216]
 gi|167658545|gb|EDS02675.1| hypothetical protein ALIPUT_02205 [Alistipes putredinis DSM 17216]
          Length = 428

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 15/183 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + + N I  LK D+     Q  +    R +  ++ ++G++N GKS+L N ++K +V  
Sbjct: 200 DRRIIRNRISKLKEDLQKIDRQMAVQRSNRGSMVRVALVGYTNVGKSTLMNLISKSEV-F 258

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     +  +     +SDT G          E  K T  EV  ADL+L + 
Sbjct: 259 AENKLFATLDTTVRKVVFDNLPFLLSDTVGFIRKLPTELIESFKSTLDEVREADLLLHVV 318

Query: 307 EINSKK---EISFPK---------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEE 353
           +I+  +   +I+  K         +     +  K D Y+   +E  D   S+     LE+
Sbjct: 319 DISHPQFEDQIAVVKQTLQDIGAGDKPVYLVFNKVDAYTYVEKEPDDLTPSTRENRSLED 378

Query: 354 LIN 356
           L  
Sbjct: 379 LKQ 381


>gi|124515730|gb|EAY57239.1| GTP-binding protein (Era) [Leptospirillum rubarum]
          Length = 312

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 77/210 (36%), Gaps = 23/210 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            Q       R+G+ + ++G  N+GKS+L NA+  + +A  + +  TTR ++         
Sbjct: 6   EQASNSAYSRSGF-VSLVGLPNSGKSTLVNAIVGEKIAATSPVAQTTRTLIQGIHTTTRG 64

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPK 318
            +   DT G         +         + +AD+++ +          ++   ++I  P 
Sbjct: 65  QIVFYDTPGFHRLSHAFNQLMGTVAREALLSADVVVWVVSLDPLPGPQDVEKMRQILLPA 124

Query: 319 --NIDFIFIGTKSDLYST--------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
                 +   TK D              E++          GL+E    +   L+  F  
Sbjct: 125 LGGRPLVIAATKMDRAKPQGMIPRLLEIEKWGFPGEIIPVSGLKE--KNLDRFLNLLFDL 182

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           LP   P   R  Y  SQTVR L    + EK
Sbjct: 183 LPAGEPVFDREWYT-SQTVRQLAREYIQEK 211


>gi|307824089|ref|ZP_07654316.1| GTP-binding proten HflX [Methylobacter tundripaludum SV96]
 gi|307734873|gb|EFO05723.1| GTP-binding proten HflX [Methylobacter tundripaludum SV96]
          Length = 401

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 57/306 (18%), Positives = 104/306 (33%), Gaps = 31/306 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W   L   +  I        + +         +  I    + +   
Sbjct: 104 LAQLQHLSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLGLRIKQIQQRLDKVDKQ 162

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
             QG+          + ++G++NAGKS+LFN L   D+  V D    T D    +  L  
Sbjct: 163 RHQGRSKRKKAEVPSVSLVGYTNAGKSTLFNKLTGADI-YVADQLFATLDPTLRNCKLPN 221

Query: 267 -YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------E 313
              + ++DT G             K T  E   ADL+L + + +S              E
Sbjct: 222 SSEIVLADTVGFIRHLPHELVAAFKSTLQEASEADLLLHVIDASSDDRAETIYQVNQVLE 281

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSN 364
                 +  + +  K DL +      +           +S+ TG G++ L   +  I SN
Sbjct: 282 DIKANEVRQLEVFNKIDLLTDIQPRIERDDVGNPVRVWLSAETGAGVDLLYQALAEIFSN 341

Query: 365 KFKKLPFSIPSHKRHLYH-LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423
              K    +   +  +   L    R +   + +   C L   A  +      LG +   V
Sbjct: 342 TKVKRTCYLQPDQGDIRAKLFACARIISEKTDDFGGCEL---AIEIDT--KYLG-LLKSV 395

Query: 424 DVEQLL 429
           ++E++L
Sbjct: 396 EIEEML 401


>gi|262401560|ref|ZP_06078127.1| GTP-binding protein HflX [Vibrio sp. RC586]
 gi|262352275|gb|EEZ01404.1| GTP-binding protein HflX [Vibrio sp. RC586]
          Length = 429

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 117/342 (34%), Gaps = 49/342 (14%)

Query: 70  PSPESFTGE----DSAE-FHVHGGIAVV-NGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           P P+ F GE    + AE   +HG   V+ N  L    +    RL                
Sbjct: 52  PHPKYFVGEGKAQEIAEAVQMHGANVVIFNHALSPAQECNLERLCQ-------------C 98

Query: 124 DLLEAESLADLISSETEMQR----RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            +++   L   I ++         ++ +  +    + L   W   L   +  I       
Sbjct: 99  RVIDRTGLILDIFAQRARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGPGE 157

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            + +      +E +  IL     ++    QG+          I ++G++NAGKS+LFN +
Sbjct: 158 TQLETDRRLLRERIKAILRRLEKVAKQREQGRRARSRAEIPTISLVGYTNAGKSTLFNRI 217

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            +  V    D    T D     +DL       ++DT G             K T  E + 
Sbjct: 218 TEAGV-YAADQLFATLDPTLRKIDLADVGPAVLADTVGFIRHLPHDLVAAFKATLQETQE 276

Query: 299 ADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYD----- 340
           AD++L + + + +             +EI     +  + +  K D     T   +     
Sbjct: 277 ADILLHVVDASDERFRENIQAVETVLQEID-AHEVPTLLVMNKIDNLEEQTPRIERDDEG 335

Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                 IS+  G G+E L   +   L+++  +    IP   +
Sbjct: 336 VPKIVWISAMQGTGIELLFEALSERLASQVVEHNLRIPPRHQ 377


>gi|228470781|ref|ZP_04055629.1| GTP-binding protein HflX [Porphyromonas uenonis 60-3]
 gi|228307454|gb|EEK16459.1| GTP-binding protein HflX [Porphyromonas uenonis 60-3]
          Length = 411

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 84/231 (36%), Gaps = 46/231 (19%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + +L  I  LK  +     Q  +    R    ++ ++G++N GKS+L N LAK D+  
Sbjct: 170 DRRIILRKISQLKEQLKKIDKQKSVQRQNRGKMVRVALVGYTNVGKSTLMNVLAKSDI-F 228

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + L      ++DT G          E  K T  EV  +DLIL + 
Sbjct: 229 AENKLFATLDTTVRKVVLGNLAFLLADTVGFIRKLPTQLVESFKSTLDEVRESDLILHVV 288

Query: 307 EINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEYDH------------ 341
           +I+  +             EI    +   I +  K D Y    ++ D             
Sbjct: 289 DISHPEFEDQIAVVTETLREIDALGDKPQILVFNKIDAYQHIPKDPDDLTPATKLNRTRE 348

Query: 342 ---------------LISSFTGEGLEELI----NKIKSILSNKFKKLPFSI 373
                           IS+ TGEG++EL     +++K I   ++    F  
Sbjct: 349 ELEKSWMARMGNDCTFISARTGEGMDELRRLLYDRVKEIHIQRYPYNDFLY 399


>gi|146340795|ref|YP_001205843.1| putative GTP-binding protein (hflX) [Bradyrhizobium sp. ORS278]
 gi|146193601|emb|CAL77618.1| putative GTP-binding protein (hflX) [Bradyrhizobium sp. ORS278]
          Length = 459

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 99/270 (36%), Gaps = 35/270 (12%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E   ++ +  ++ + S L   W   L   R          E +       + + +
Sbjct: 141 RAKTKEGALQVELAHLNYQRSRLVRSWTH-LERQRGGFGFMGGPGETQI--EADRRLIGD 197

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  L+N++    +  +L    R       + ++G++NAGKS+LFN L + DV     + 
Sbjct: 198 RITRLENELKKVQATRRLHRAGRQRVPYRVVALVGYTNAGKSTLFNRLTRADVQAADMLF 257

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN-- 309
            T    L       G    +SDT G             + T  EV  AD+IL +++++  
Sbjct: 258 ATLDPTLRAISLPHGGKAMLSDTVGFISNLPTQLVAAFRATLEEVLEADVILHVRDMSHE 317

Query: 310 -------------SKKEISFPKNIDFIFIGTKSDLYSTYTEE-------------YDHLI 343
                        S+  I        I +  K D       E                ++
Sbjct: 318 DAEAQQHDVELVLSQLGIDPEATDTIIEVWNKIDRLDDAARENLANIAARRPPERPCFMV 377

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           S+ TGEG++ L+  I+  L+     L  +I
Sbjct: 378 SAETGEGVDALLQAIEDRLAAARTTLDLTI 407


>gi|109900278|ref|YP_663533.1| GTP-binding protein, HSR1-related [Pseudoalteromonas atlantica T6c]
 gi|109702559|gb|ABG42479.1| GTP-binding protein HflX [Pseudoalteromonas atlantica T6c]
          Length = 432

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 109/355 (30%), Gaps = 58/355 (16%)

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRL---------ANPGEFSRRAFE------NGK 122
           ED  E  +    A VN + + +    N            A     + RA E      N  
Sbjct: 25  EDLLELQLLATSAGVNAV-DVVTGSRNAPHTRYFVGSGKAEEIANTVRASEADVVIFNHS 83

Query: 123 IDLLEAESLADLISSE------------------TEMQRRLSMEGMSGELSSLYGQWIDK 164
           +   +  +L  L                       E + ++ +  +    + L   W   
Sbjct: 84  LSPSQERNLEQLCKCRVLDRTGLILDIFAQRARTHEGKLQVELAQLKHISTRLIRGWTH- 142

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L   +  I        + +      +  +  I      +     QG+   +      + +
Sbjct: 143 LERQKGGIGLRGPGETQLETDRRLLRARIKSIQGRLRKVQKQREQGRRARVRAEIPTLAL 202

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDI 283
           +G++NAGKS+LFN + + +V    D    T D     ++L+      ++DT G       
Sbjct: 203 VGYTNAGKSTLFNTITQSEV-YAADQLFATLDPTLRRIELQDVGPAILADTVGFIRHLPH 261

Query: 284 VEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIGTKSDL 331
                 K T  E + ADL+L + +            +N   +      I  + I  K D 
Sbjct: 262 DLVAAFKATLQETQQADLLLHVVDYSDDQFRENIDQVNEVLDEIDSDEIPQLMICNKIDR 321

Query: 332 YSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                   D           +S+  G G E L   +   L+    +    IP  +
Sbjct: 322 MDGVEPRIDRDENGVPTRVWMSAQQGLGTELLFEALSDCLAQNMVRHQLRIPPQE 376


>gi|302339575|ref|YP_003804781.1| GTP-binding proten HflX [Spirochaeta smaragdinae DSM 11293]
 gi|301636760|gb|ADK82187.1| GTP-binding proten HflX [Spirochaeta smaragdinae DSM 11293]
          Length = 429

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 99/272 (36%), Gaps = 28/272 (10%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++++  M   L  L   W   L+  R          E E       + VL  
Sbjct: 126 AATREASLQVALARMEYSLPRLTRAWTH-LSRQRGGSRGTR--GEGETQLESDRRIVLAK 182

Query: 196 ILFLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  LK ++     Q       R       + ++G++NAGKSSL NALA   V    D   
Sbjct: 183 VAKLKKELEGVRRQRATARKQRRSVPLPTVALVGYTNAGKSSLLNALAGSAVN-AEDKLF 241

Query: 253 TTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D  T  L+L  G  V ++DT G          +  + T  E   ADL++ + + +  
Sbjct: 242 ATLDPTTRRLELSGGRSVLLTDTVGFIRKLPHALVDAFRATLEETLLADLLIHVIDASDP 301

Query: 312 KEISF------------PKNIDFIFIGTKSDLYS--------TYTEEYDHLISSFTGEGL 351
           + +               ++ + I +  K+DL             +     IS+  G  L
Sbjct: 302 EAVEHYRTTRQVLSEIGAEDTEQIIVLNKADLPHDPLLLAPLREADPQALFISTKNGLHL 361

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           + L  +I  +L        + IP  +  L  L
Sbjct: 362 DILKERIAVMLEKHTSGHRYRIPLDRYDLVAL 393


>gi|288560596|ref|YP_003424082.1| ferrous iron transport protein B FeoB1 [Methanobrevibacter
           ruminantium M1]
 gi|288543306|gb|ADC47190.1| ferrous iron transport protein B FeoB1 [Methanobrevibacter
           ruminantium M1]
          Length = 682

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 99/237 (41%), Gaps = 41/237 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            ++++G  N GKS  FN L     A+V++ PGTT D+   +   E   V I+D  G+ + 
Sbjct: 33  NVLLIGSPNVGKSLTFNKLTG-MTAMVSNYPGTTVDIDEGNFTYENKTVHITDPPGLYDL 91

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISF-----PKNIDFIFIGTKSDLYST 334
           + I E+E + +  +  +  DL++ + +  N +K I           + I +    D    
Sbjct: 92  NTITEEERVAKLLVLDKRFDLMVHVVDAKNIEKSIDLTLQLIDAGKEVILVLNMMDELEK 151

Query: 335 YTEEYD------------HLISSFTGEGLEELINKI--------------KSILSNKFKK 368
                D             L ++    GL++L + I              K++L   + +
Sbjct: 152 MGATVDAPSLSHELGIPVVLTAAAQNRGLDDLKHTIVNYDSIENQILSESKTLLDVDYGR 211

Query: 369 -LPFSIPSHKRHLY-HLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG 421
            +  +I   +R++  +   + RYL ++ L   +   D++  +E+      +L ++ G
Sbjct: 212 SIEIAISEIQRNIKGNYPVSKRYLAVSLLEGDEDSEDLLMESED----WDNLSQVIG 264


>gi|15836693|ref|NP_297381.1| GTP-binding protein [Xylella fastidiosa 9a5c]
 gi|9104866|gb|AAF82901.1|AE003863_3 GTP-binding protein [Xylella fastidiosa 9a5c]
          Length = 450

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 99/306 (32%), Gaps = 29/306 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           +   E + ++ +  +    + L   W          I        + +      ++ +  
Sbjct: 115 ACSHEGKLQVELAQLRHLATRLVRGWTHLERQRGGAIGLRGPGETQLETDRRLLQKRVEQ 174

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +    + +    +Q +   +     +I ++G++N+GKS+LFNAL     A   D    T 
Sbjct: 175 LQKRLSKVEVQRTQMRRARVRSEVPRIALVGYTNSGKSTLFNALTGAS-AYTADQLFATL 233

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           D     + L G    ++DT G             + T  E   ADL+L + +        
Sbjct: 234 DPKVRRIVLPGSSAMLADTVGFVRHLPHELVAAFRSTLSEAREADLLLHVIDAADPLREE 293

Query: 316 FPKNIDFI------------FIGTKSDLYSTYTEEYD-------------HLISSFTGEG 350
               +D +             +  K D         D               +S+  G G
Sbjct: 294 RIDQVDEVLQAIGAGELPQLLVFNKIDCIEGAEVRQDTQDGIPDQARRERVWLSARHGHG 353

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DI-IAE 407
           +E L   +   L  +  +    +      L      ++ +     +E    L  D+ +AE
Sbjct: 354 VELLQQVLDHRLKMQNVQGELRLLPSAGRLRARLHELKGVREEQTDEHGWLLKIDLSLAE 413

Query: 408 NLRLAS 413
             RLA+
Sbjct: 414 IERLAA 419


>gi|89068178|ref|ZP_01155588.1| GTP-binding protein HflX [Oceanicola granulosus HTCC2516]
 gi|89046095|gb|EAR52153.1| GTP-binding protein HflX [Oceanicola granulosus HTCC2516]
          Length = 430

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 28/204 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   +  L+  +   +    L    R       + ++G++NAGKS+LFN L   
Sbjct: 173 EADRRAIDEQLARLRKQLEKVVKTRTLHRASRAKVPFPIVALVGYTNAGKSTLFNRLTGA 232

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V    D+   T D     ++L  G  V +SDT G             + T  EV +ADL
Sbjct: 233 EVM-AKDMLFATLDPTMRKVELPSGQEVILSDTVGFISDLPTELVAAFRATLEEVLDADL 291

Query: 302 ILLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY--------- 339
           IL ++++   +              I   ++   + +  K DL      E          
Sbjct: 292 ILHVRDVAHAETEEQAEDVRTILSGIGVGEDAPLLEVWNKIDLLPPEEREGRATQAARRD 351

Query: 340 -DHLISSFTGEGLEELINKIKSIL 362
               +S+  G GL+ L+  + + +
Sbjct: 352 DVFAVSALEGIGLDPLLAAVSARV 375


>gi|317508759|ref|ZP_07966410.1| GTP-binding protein Era [Segniliparus rugosus ATCC BAA-974]
 gi|316252953|gb|EFV12372.1| GTP-binding protein Era [Segniliparus rugosus ATCC BAA-974]
          Length = 301

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           Q +  E  R+G+ +   G  N GKSSL NAL   +V I +  P TTR  +   L+   + 
Sbjct: 2   QHRFPEGFRSGF-VCFAGRPNVGKSSLINALVGAEVMITSAHPQTTRRAVRAILNAPEHQ 60

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           + I DT G+      + +             D++      + +
Sbjct: 61  IVIVDTPGVHRPRTALSERLNDAAAQAFAEVDVVGFCVPADEE 103


>gi|254469962|ref|ZP_05083367.1| GTP-binding proten HflX [Pseudovibrio sp. JE062]
 gi|211961797|gb|EEA96992.1| GTP-binding proten HflX [Pseudovibrio sp. JE062]
          Length = 491

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 104/271 (38%), Gaps = 36/271 (13%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T+  R    +  ++ + S L   W    TH+              + Q  + + ++ 
Sbjct: 153 RAQTKEGRLQVELAHLTWQKSRLVRSW----THLERQRGGLGFVGGPGETQIEADRRIIQ 208

Query: 195 DILFLKN-DISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           D + L    +       KL    R       I  +G++NAGKS+LFN +   +V    D+
Sbjct: 209 DRITLLKGQLEQVQRTRKLHRKQRKKVPHPVIAFVGYTNAGKSTLFNRMTNAEV-FAKDL 267

Query: 251 PGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D     L L  G  V +SDT G             + T  EV  AD++L +++I 
Sbjct: 268 LFATLDPTLRRLKLPHGREVILSDTVGFISELPHNLVAAFRATLEEVIQADIVLHVRDIA 327

Query: 310 SKK---------------EISFPKNIDFIFIGTKSD----------LYSTYTEEYDHLIS 344
            +                 +   ++   I +  K D          L S   +E    +S
Sbjct: 328 HEDTKAQSLDVNETLEMLGLKVSESDRVIEVYNKIDKLDEAHREKLLESNSVDEGPISVS 387

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           + +G+G+ +L+ +I++ L+ +   +   +P 
Sbjct: 388 AISGDGIPDLLARIEARLAEQLDTVTMVLPH 418


>gi|294672901|ref|YP_003573517.1| GTP-binding protein [Prevotella ruminicola 23]
 gi|294471742|gb|ADE81131.1| GTP-binding protein [Prevotella ruminicola 23]
          Length = 443

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 76/204 (37%), Gaps = 17/204 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  I  LK  + + I + K  +    G   ++ ++G++N GKS++ N LAK +
Sbjct: 204 EMDRRIILQRITLLKQRL-AEIDKQKTTQRKNRGRLIRVALVGYTNVGKSTMMNLLAKSE 262

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     ++DT G          E  K T  EV  ADL++
Sbjct: 263 V-FAENKLFATLDTTVRKMTIDNLPFLLADTVGFIRKLPSDLVESFKSTLDEVREADLLV 321

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEG 350
            + +I+        +            +   + +  K D Y+    EE D   ++     
Sbjct: 322 HVVDISHPDFEDQIRVVEETLKELGCADKPAMLVFNKIDAYTWVEKEEDDLTPATKENMT 381

Query: 351 LEELINKIKSILSNKFKKLPFSIP 374
           LE+L     +        L     
Sbjct: 382 LEDLEKTWMARTGENQHYLECLFI 405


>gi|259907678|ref|YP_002648034.1| GTP-binding protein Era [Erwinia pyrifoliae Ep1/96]
 gi|224963300|emb|CAX54785.1| GTP-binding protein [Erwinia pyrifoliae Ep1/96]
 gi|283477529|emb|CAY73445.1| GTP-binding protein Era [Erwinia pyrifoliae DSM 12163]
          Length = 301

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGQYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + ++++ + E     +  E+   K     +  +    K D   
Sbjct: 71  KRAINRLMNRAASSSIGDVEMVIFVVEGTRWTADDEMVLNKLKDGKVPVLLAINKVDNII 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
             +    H               IS+  G  ++ + + ++  L       P    + +  
Sbjct: 131 DKSILLPHLQFLGQQMNFMDVVPISAEKGSNVDTIASIVRKRLPEAEHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|26991571|ref|NP_746996.1| GTP-binding protein HflX [Pseudomonas putida KT2440]
 gi|148549971|ref|YP_001270073.1| HSR1-related GTP-binding protein [Pseudomonas putida F1]
 gi|24986658|gb|AAN70460.1|AE016687_7 GTP-binding protein HflX [Pseudomonas putida KT2440]
 gi|148514029|gb|ABQ80889.1| GTP-binding protein, HSR1-related [Pseudomonas putida F1]
          Length = 433

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 99/287 (34%), Gaps = 28/287 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRIR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFNAL + +V    D    T
Sbjct: 174 QIKSRLEKVRSQREQARRGRKRADIPSVSLVGYTNAGKSTLFNALTESEV-YAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L+L     + ++DT G          E  + T  E  N+DL+L + + +  + 
Sbjct: 233 LDPTLRRLELNDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDAHEPER 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +               + +  + +  K DL      +             +S+  G GLE
Sbjct: 293 MEQIEQVLAVLGEIGAEGLPILEVYNKLDLLEDVEPQIQRNADGKPERVWVSARDGRGLE 352

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
            +   +  +L +    L       ++    L      L      E D
Sbjct: 353 LVGQAVAELLGD---DLFVGTLCLEQRFARLRAQFFALGAVQSEEHD 396


>gi|319427721|gb|ADV55795.1| GTP-binding proten HflX [Shewanella putrefaciens 200]
          Length = 435

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 114/312 (36%), Gaps = 32/312 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I      +     Q +          + ++G++NAGKS+LFNAL   DV    D    T
Sbjct: 173 NINKRLERVDKQREQSRRARKRSEMPTVSLVGYTNAGKSTLFNALTSSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------ 308
            D     LDL    V ++DT G             K T  E   A+L+L + +       
Sbjct: 232 LDPTLRKLDLPDGAVILADTVGFIRHLPHDLVAAFKATLQETRQAELLLHIVDCADENMA 291

Query: 309 -NSKKEISFPKNIDFI-----FIGTKSDLYSTYTEEYDH---------LISSFTGEGLEE 353
            N ++  S  K+ID        +  K DL    T   ++          +S+    G + 
Sbjct: 292 DNFEQVQSVLKDIDADEVMQLIVCNKIDLLEDVTPRIEYDDQGKPIRVWVSAQKRLGFDL 351

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL---- 409
           L+  I  ++    ++L   IP+   H  +L Q  R   +      D G  I++  L    
Sbjct: 352 LLKAITELIGEVIRELTLRIPATAGH--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDAD 409

Query: 410 --RLASVSLGKI 419
             RLA  S G++
Sbjct: 410 WRRLAKQSQGEL 421


>gi|326561134|gb|EGE11499.1| GTP-binding proten HflX [Moraxella catarrhalis 7169]
 gi|326566655|gb|EGE16796.1| GTP-binding proten HflX [Moraxella catarrhalis 12P80B1]
 gi|326567977|gb|EGE18074.1| GTP-binding proten HflX [Moraxella catarrhalis BC1]
          Length = 469

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 105/318 (33%), Gaps = 40/318 (12%)

Query: 120 NGKIDLLEAESLADLISSE------------------TEMQRRLSMEGMSGELSSLYGQW 161
           N  +   +  +L  LI                      E + ++ +  ++   + L   W
Sbjct: 91  NHTLTPSQERNLESLIKCRVLDRTGLILDIFAQRARTHEGKLQVELAQLNHLATRLVRGW 150

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
              L   +  I        + +      +  +  +    + +     QG+      +   
Sbjct: 151 TH-LERQKGGIGLRGPGETQLETDRRLLQIRVTQLKAKLDKVKQTRKQGRAKRQKSDIPT 209

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280
           I ++G++NAGKS+LFN L   ++    D    T D     +   G   V ++DT G    
Sbjct: 210 ISLVGYTNAGKSTLFNRLTDDNI-YAADQLFATLDPTLRRVKWPGVGNVVLADTVGFVRH 268

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----------ISFPKNIDFIFIGTKS 329
                 E    T  E   ADL+L + +  S+                  +   + +  K 
Sbjct: 269 LPHELVESFHATLEETLEADLLLHVIDAASEDMHAQIEAVNDVLEQIQADAPILLVFNKI 328

Query: 330 DLYSTYTE--------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           D      +         +   +S+    G+ +L+  ++ +LS +      ++P H   L 
Sbjct: 329 DKSGEPAKIHYQDHGVPHRVYVSAKENLGINQLMLAVQELLSGQLNHYTLTLPHHAGALK 388

Query: 382 HLSQTVRYLEMASLNEKD 399
           +    +  +E  S +E  
Sbjct: 389 NTLHELGVIESESFDELG 406


>gi|228952252|ref|ZP_04114341.1| hypothetical protein bthur0006_16590 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229079053|ref|ZP_04211604.1| hypothetical protein bcere0023_17150 [Bacillus cereus Rock4-2]
 gi|229178276|ref|ZP_04305646.1| hypothetical protein bcere0005_16380 [Bacillus cereus 172560W]
 gi|228605155|gb|EEK62606.1| hypothetical protein bcere0005_16380 [Bacillus cereus 172560W]
 gi|228704227|gb|EEL56662.1| hypothetical protein bcere0023_17150 [Bacillus cereus Rock4-2]
 gi|228807380|gb|EEM53910.1| hypothetical protein bthur0006_16590 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 419

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 102/270 (37%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA----KKDVAIVT 248
           I  L  D+ + ++Q +     R       + ++G++NAGKS+  NA+       +   V 
Sbjct: 171 ISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVF 230

Query: 249 --DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    ++DL       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP     +
Sbjct: 351 IEELVEMIRSHIYKEYTKCEMLIPYDHGQV 380


>gi|116071422|ref|ZP_01468691.1| putative GTP-binding protein, transporter associated [Synechococcus
           sp. BL107]
 gi|116066827|gb|EAU72584.1| putative GTP-binding protein, transporter associated [Synechococcus
           sp. BL107]
          Length = 555

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 106/283 (37%), Gaps = 41/283 (14%)

Query: 123 IDLLEAESLADLISS----ETEMQRRL-SME--GMSGELSSLYGQWIDKLTHIRSFIEAD 175
           +  ++A ++  L++      +E+   + +      +G L     Q   +L  +    ++ 
Sbjct: 258 LTPVQARNIERLVNCPVSDRSELILDIFAQRAGSAAGRLQVELAQLRYRLPRLLGRGQSM 317

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK--------IVILGH 227
                    +     ++  D   +   I   +   +  +  R+  +        + ++G+
Sbjct: 318 SRQGGGIGTRGPGETQLEKDRRAISRRIERLLRDQQQLQAHRSRLRDQRRGLPRVALVGY 377

Query: 228 SNAGKSSLFNALAKK---DVAIVTDIPGTTRDVLTIDLDLE-----GYLVKISDTAGIRE 279
           +NAGKSSL NAL  +   D  +  +    T D  T  LDL         + I+DT G   
Sbjct: 378 TNAGKSSLLNALCGQRESDRVLAENKLFATLDPTTRKLDLPRPGERPQRMLITDTVGFIR 437

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-----------FIFIGTK 328
                  E  + T  E  +ADL+L++ ++     IS    +               +  +
Sbjct: 438 DLPKPLVEAFRATLEEALDADLLLIVVDLADPDWISQLSTVHRLLDSLGSSALRRVVANQ 497

Query: 329 SD------LYSTYTEEYD-HLISSFTGEGLEELINKIKSILSN 364
            D      ++S   +E D   +S+  G+GL+ L + ++    +
Sbjct: 498 IDRCDLEAIHSIRDQEPDALFLSAVRGDGLQGLQDWLRRQFFD 540


>gi|15832686|ref|NP_311459.1| GTP-binding protein Era [Escherichia coli O157:H7 str. Sakai]
 gi|168748364|ref|ZP_02773386.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4113]
 gi|168757773|ref|ZP_02782780.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4401]
 gi|168761187|ref|ZP_02786194.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4501]
 gi|168768670|ref|ZP_02793677.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4486]
 gi|168773508|ref|ZP_02798515.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4196]
 gi|168778543|ref|ZP_02803550.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4076]
 gi|168787926|ref|ZP_02812933.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC869]
 gi|168798948|ref|ZP_02823955.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC508]
 gi|195936713|ref|ZP_03082095.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4024]
 gi|208807726|ref|ZP_03250063.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4206]
 gi|208812920|ref|ZP_03254249.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4045]
 gi|208818911|ref|ZP_03259231.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4042]
 gi|209400046|ref|YP_002272041.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4115]
 gi|217326912|ref|ZP_03442995.1| GTP-binding protein Era [Escherichia coli O157:H7 str. TW14588]
 gi|254794516|ref|YP_003079353.1| GTP-binding protein Era [Escherichia coli O157:H7 str. TW14359]
 gi|261222998|ref|ZP_05937279.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259451|ref|ZP_05951984.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291283841|ref|YP_003500659.1| GTP-binding protein era [Escherichia coli O55:H7 str. CB9615]
 gi|13959352|sp|P58070|ERA_ECO57 RecName: Full=GTPase Era
 gi|226741207|sp|B5Z140|ERA_ECO5E RecName: Full=GTPase Era
 gi|13362903|dbj|BAB36855.1| GTP-binding protein [Escherichia coli O157:H7 str. Sakai]
 gi|187770556|gb|EDU34400.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4196]
 gi|188017077|gb|EDU55199.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4113]
 gi|189003180|gb|EDU72166.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4076]
 gi|189355284|gb|EDU73703.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4401]
 gi|189362313|gb|EDU80732.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4486]
 gi|189368417|gb|EDU86833.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4501]
 gi|189372292|gb|EDU90708.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC869]
 gi|189378591|gb|EDU97007.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC508]
 gi|208727527|gb|EDZ77128.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4206]
 gi|208734197|gb|EDZ82884.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4045]
 gi|208739034|gb|EDZ86716.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4042]
 gi|209161446|gb|ACI38879.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4115]
 gi|209762888|gb|ACI79756.1| GTP-binding protein [Escherichia coli]
 gi|209762890|gb|ACI79757.1| GTP-binding protein [Escherichia coli]
 gi|209762892|gb|ACI79758.1| GTP-binding protein [Escherichia coli]
 gi|209762894|gb|ACI79759.1| GTP-binding protein [Escherichia coli]
 gi|209762896|gb|ACI79760.1| GTP-binding protein [Escherichia coli]
 gi|217319279|gb|EEC27704.1| GTP-binding protein Era [Escherichia coli O157:H7 str. TW14588]
 gi|254593916|gb|ACT73277.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli
           O157:H7 str. TW14359]
 gi|290763714|gb|ADD57675.1| GTP-binding protein era [Escherichia coli O55:H7 str. CB9615]
 gi|320188907|gb|EFW63566.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC1212]
 gi|320640815|gb|EFX10309.1| GTPase Era [Escherichia coli O157:H7 str. G5101]
 gi|320646161|gb|EFX15101.1| GTPase Era [Escherichia coli O157:H- str. 493-89]
 gi|320651456|gb|EFX19852.1| GTPase Era [Escherichia coli O157:H- str. H 2687]
 gi|320657057|gb|EFX24876.1| GTPase Era [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320662722|gb|EFX30061.1| GTPase Era [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667542|gb|EFX34462.1| GTPase Era [Escherichia coli O157:H7 str. LSU-61]
 gi|326340372|gb|EGD64176.1| GTP-binding protein Era [Escherichia coli O157:H7 str. 1125]
 gi|326345055|gb|EGD68799.1| GTP-binding protein Era [Escherichia coli O157:H7 str. 1044]
          Length = 301

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  +  +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGLNVATIAAIVRKHLPEATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|309703375|emb|CBJ02713.1| putative GTP-binding protein [Escherichia coli ETEC H10407]
          Length = 348

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 30/273 (10%)

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+    +    + E +   L  L   +S HI +  L ++  +   I I+G S AGKSSL 
Sbjct: 53  FTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLC 111

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLE 295
           NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ D   E E + R    
Sbjct: 112 NALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDI-- 169

Query: 296 VENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           +   DL+L L + + +         + I    +   +F+ T++D  +    E+D      
Sbjct: 170 LPELDLVLWLIKADDRALSVDDYFWRHILHRGHQRVLFVVTQAD-KTEPCHEWDMAGIQP 228

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402
           +    + +  K    +   F+ +   +    R  + L   V  L  A  +     L    
Sbjct: 229 SPAQAQNIREK-TEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRL 287

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
             ++  E++R  +    + TG V      D IF
Sbjct: 288 QDELRTESVRSQARE--QFTGAV------DRIF 312


>gi|282880264|ref|ZP_06288980.1| GTP-binding protein HflX [Prevotella timonensis CRIS 5C-B1]
 gi|281305859|gb|EFA97903.1| GTP-binding protein HflX [Prevotella timonensis CRIS 5C-B1]
          Length = 415

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 17/196 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  I  LK  +   I + K  +    G   ++ ++G++N GKS+L N L+K +
Sbjct: 181 EMDRRIILQRITLLKQRLEQ-IDKQKTTQRKNRGRMIRVALVGYTNVGKSTLMNLLSKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + +E     ++DT G          +  K T  EV  ADL+L
Sbjct: 240 V-FAENKLFATLDTTVRKVVVENLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLL 298

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEY-DHLISSFTGEG 350
            + +I+    +++I   +N            + I  K D Y+   ++  D   S+     
Sbjct: 299 HVVDISHPDFEEQIHVVENTLKELGCAEKPSMIIFNKIDNYTWVPKDADDLTPSTAENIT 358

Query: 351 LEELINKIKSILSNKF 366
           L+EL     + L+++ 
Sbjct: 359 LDELKQTWMARLNDQC 374


>gi|326565439|gb|EGE15611.1| GTP-binding proten HflX [Moraxella catarrhalis 103P14B1]
 gi|326569444|gb|EGE19504.1| GTP-binding proten HflX [Moraxella catarrhalis BC8]
 gi|326577052|gb|EGE26947.1| GTP-binding proten HflX [Moraxella catarrhalis 101P30B1]
          Length = 469

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 105/318 (33%), Gaps = 40/318 (12%)

Query: 120 NGKIDLLEAESLADLISSE------------------TEMQRRLSMEGMSGELSSLYGQW 161
           N  +   +  +L  LI                      E + ++ +  ++   + L   W
Sbjct: 91  NHTLTPSQERNLESLIKCRVLDRTGLILDIFAQRARTHEGKLQVELAQLNHLATRLVRGW 150

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
              L   +  I        + +      +  +  +    + +     QG+      +   
Sbjct: 151 TH-LERQKGGIGLRGPGETQLETDRRLLQIRVTQLKAKLDKVKQTRKQGRAKRQKSDIPT 209

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280
           I ++G++NAGKS+LFN L   ++    D    T D     +   G   V ++DT G    
Sbjct: 210 ISLVGYTNAGKSTLFNRLTDDNI-YAADQLFATLDPTLRRVKWPGVGNVVLADTVGFVRH 268

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----------ISFPKNIDFIFIGTKS 329
                 E    T  E   ADL+L + +  S+                  +   + +  K 
Sbjct: 269 LPHELVESFHATLEETLEADLLLHVIDAASEDMHAQIEAVNDVLEQIQADAPILLVFNKI 328

Query: 330 DLYSTYTE--------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           D      +         +   +S+    G+ +L+  ++ +LS +      ++P H   L 
Sbjct: 329 DKSGEPAKIHYQDHGVPHRVYVSAKENLGINQLMLAVQELLSGQLNHYTLTLPHHAGALK 388

Query: 382 HLSQTVRYLEMASLNEKD 399
           +    +  +E  S +E  
Sbjct: 389 NTLHELGVIESESFDELG 406


>gi|148255461|ref|YP_001240046.1| putative GTP-binding protein (hflX) [Bradyrhizobium sp. BTAi1]
 gi|146407634|gb|ABQ36140.1| GTP-binding protein HflX [Bradyrhizobium sp. BTAi1]
          Length = 459

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 98/270 (36%), Gaps = 35/270 (12%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E   ++ +  ++ + S L   W   L   R          E +       + + +
Sbjct: 141 RAKTKEGALQVELAHLNYQRSRLVRSWTH-LERQRGGFGFMGGPGETQI--EADRRLIGD 197

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  L+N++    +  +L    R       + ++G++NAGKS+LFN L + DV     + 
Sbjct: 198 RITRLENELKKVQATRRLHRAGRQRVPYRVVALVGYTNAGKSTLFNRLTRADVQAADMLF 257

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T    L       G    +SDT G             + T  EV  AD+IL +++++ +
Sbjct: 258 ATLDPTLRAITLPHGGKAMLSDTVGFISNLPTQLVAAFRATLEEVLEADVILHVRDMSHE 317

Query: 312 K---------------EISFPKNIDFIFIGTKSDLYSTYTEE-------------YDHLI 343
                            I        I +  K D       E                L+
Sbjct: 318 DAEAQQHDVELVLGQLGIDPEATDTIIEVWNKIDRLDEAARENLANIASRRPPERPCLLV 377

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           S+ TGEG++ L+  I+  L+     L  +I
Sbjct: 378 SAHTGEGVDALLQAIEDRLAAARTTLDLTI 407


>gi|325002639|ref|ZP_08123751.1| GTP-binding protein [Pseudonocardia sp. P1]
          Length = 492

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 85/224 (37%), Gaps = 28/224 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +   +  L+ +I +   + + + G   RN    + I+G++NAGKSSL N L   
Sbjct: 209 ELDRRRIRARMSKLRREIGAMRQVRETQRGNRTRNEVPSVAIVGYTNAGKSSLLNQLTDA 268

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +V D    T D  T   +  +G    ++DT G          E  + T  E   ADL
Sbjct: 269 GV-LVQDSLFATLDPTTRRSETPDGRAYTLTDTVGFVRHLPHQLVEAFRSTLEEAARADL 327

Query: 302 ILLLKEINSK---KEISFPKNIDFI-------------FIGTKSDLYS-------TYTEE 338
           ++ + + +      +I+  + +                 +  K D           + + 
Sbjct: 328 LVHVVDGSDPLPDDQIAAVRQVLVEIGEEQGGTMPRELLVINKVDAAGDLALARLRHAQP 387

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
               +S+  G G+ +L ++I  +L     ++   +P  +  L  
Sbjct: 388 EAVFVSAHDGSGIGKLRDRIAELLPRPEYEVDLLLPYTEGALVA 431


>gi|260856464|ref|YP_003230355.1| hypothetical protein ECO26_3414 [Escherichia coli O26:H11 str.
           11368]
 gi|257755113|dbj|BAI26615.1| hypothetical protein ECO26_3414 [Escherichia coli O26:H11 str.
           11368]
          Length = 358

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 30/273 (10%)

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+    +    + E +   L  L   +S HI +  L ++  +   I I+G S AGKSSL 
Sbjct: 63  FTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLC 121

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLE 295
           NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ D   E E + R    
Sbjct: 122 NALFQGEVTPVSDVHAGTREVRRFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDI-- 179

Query: 296 VENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           +   DL+L L + + +         + I    +   +F+ T++D  +    E+D      
Sbjct: 180 LPELDLVLWLIKADDRALSVDEYFWRHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQP 238

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402
           +    + +  K    +   F+ +   +    R  + L   V  L  A  +     L    
Sbjct: 239 SPAQAQNIREK-TEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRL 297

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
             ++  E++R  +    + TG V      D IF
Sbjct: 298 QDELRTESVRGQARE--QFTGAV------DRIF 322


>gi|326572797|gb|EGE22783.1| GTP-binding proten HflX [Moraxella catarrhalis BC7]
          Length = 469

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 105/318 (33%), Gaps = 40/318 (12%)

Query: 120 NGKIDLLEAESLADLISSE------------------TEMQRRLSMEGMSGELSSLYGQW 161
           N  +   +  +L  LI                      E + ++ +  ++   + L   W
Sbjct: 91  NHTLTPSQERNLESLIKCRVLDRTGLILDIFAQRARTHEGKLQVELAQLNHLATRLVRGW 150

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
              L   +  I        + +      +  +  +    + +     QG+      +   
Sbjct: 151 TH-LERQKGGIGLRGPGETQLETDRRLLQIRVTQLKAKLDKVKQTRKQGRAKRQKSDIPT 209

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280
           I ++G++NAGKS+LFN L   ++    D    T D     +   G   V ++DT G    
Sbjct: 210 ISLVGYTNAGKSTLFNRLTDDNI-YAADQLFATLDPTLRRVKWPGVGNVVLADTVGFVRH 268

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----------ISFPKNIDFIFIGTKS 329
                 E    T  E   ADL+L + +  S+                  +   + +  K 
Sbjct: 269 LPHELVESFHATLEETLEADLLLHVIDAASEDMHAQIEAVNDVLEQIQADAPILLVFNKI 328

Query: 330 DLYSTYTE--------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           D      +         +   +S+    G+ +L+  ++ +LS +      ++P H   L 
Sbjct: 329 DKSGEPAKIHYQDHGVPHRVYVSAKENLGINQLMLAVQELLSGQLNHYTLTLPHHAGALK 388

Query: 382 HLSQTVRYLEMASLNEKD 399
           +    +  +E  S +E  
Sbjct: 389 NTLHELGVIESESFDELG 406


>gi|269127450|ref|YP_003300820.1| GTP-binding protein Era [Thermomonospora curvata DSM 43183]
 gi|268312408|gb|ACY98782.1| GTP-binding protein Era [Thermomonospora curvata DSM 43183]
          Length = 311

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           I   +  E  R G+    +G  N GKS+L NAL    VAI +  P TTR  +   +    
Sbjct: 6   IMTAQAPEGFRCGF-ACFIGRPNVGKSTLMNALVGTKVAITSSRPQTTRRAIRGIVHRCD 64

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISF 316
             + I DT G+ +   ++ +         +   D+I      N          +++    
Sbjct: 65  AQLIIVDTPGLHKPRTLLGERLDSLVRSTLTEVDVIGFCIPANEKIGPGDRFIARELAGL 124

Query: 317 PKNIDFIFIGTKSDLYS 333
                 + I TK+DL  
Sbjct: 125 SGKTPVVAIVTKTDLAD 141


>gi|238597293|ref|XP_002394286.1| hypothetical protein MPER_05849 [Moniliophthora perniciosa FA553]
 gi|215463079|gb|EEB95216.1| hypothetical protein MPER_05849 [Moniliophthora perniciosa FA553]
          Length = 51

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 35/51 (68%)

Query: 65  LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           + + F +P+SFT ED  E H+H G A+V+ +L+ L+ +P  R A PGEF+R
Sbjct: 1   MAVFFRAPKSFTTEDVLELHIHSGRAIVSAVLKALSSLPFCRPAEPGEFTR 51


>gi|167035934|ref|YP_001671165.1| GTP-binding proten HflX [Pseudomonas putida GB-1]
 gi|166862422|gb|ABZ00830.1| GTP-binding proten HflX [Pseudomonas putida GB-1]
 gi|313500872|gb|ADR62238.1| HflX [Pseudomonas putida BIRD-1]
          Length = 433

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 99/287 (34%), Gaps = 28/287 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRIR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFNAL + +V    D    T
Sbjct: 174 QIKSRLEKVRSQREQARRGRKRADIPSVSLVGYTNAGKSTLFNALTESEV-YAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L+L     + ++DT G          E  + T  E  N+DL+L + + +  + 
Sbjct: 233 LDPTLRRLELNDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDAHEPER 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +               + +  + +  K DL      +             +S+  G GLE
Sbjct: 293 MEQIEQVLAVLGEIGAEGLPILEVYNKLDLLEDVEPQIQRNADGKPERVWVSARDGRGLE 352

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
            +   +  +L +    L       ++    L      L      E D
Sbjct: 353 LVGQAVAELLGD---DLFVGTLCLEQRFARLRAQFFALGAVQSEEHD 396


>gi|325291308|ref|YP_004267489.1| GTP-binding proten HflX [Syntrophobotulus glycolicus DSM 8271]
 gi|324966709|gb|ADY57488.1| GTP-binding proten HflX [Syntrophobotulus glycolicus DSM 8271]
          Length = 597

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 98/264 (37%), Gaps = 23/264 (8%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           I ++    R   ++    ++     + +     +             E       + +  
Sbjct: 291 IFAQRARSREGMLQVELAQMEYRLPRLMGMGLSLSRLGGGIGTRGPGETKLETDRRHIRT 350

Query: 195 DILFLKNDISSHISQGK--LGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  L+  ++    Q      E  ++G  +V I+G++NAGKS+L N L +  V    D  
Sbjct: 351 RITHLRAQLAGIRKQRGVLRSERQKSGIPVVSIVGYTNAGKSTLLNTLCQTAV-FAEDKL 409

Query: 252 GTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D  T  L+  +   V ++DT G          E  K T  EV  +DLIL++ + + 
Sbjct: 410 FATLDPTTRKLEFSDDRTVLLTDTVGFIRKLPHHLLEAFKSTLEEVVLSDLILIVVDASD 469

Query: 311 KKEISFPKNID------------FIFIGTKSDLYSTYT------EEYDHLISSFTGEGLE 352
            +     + +D             I +  K D  +               IS+ TG GL+
Sbjct: 470 PQVEDHIRIVDEILGELGASAKPAIIVLNKIDKLADNPVILSRENRPVIEISARTGLGLD 529

Query: 353 ELINKIKSILSNKFKKLPFSIPSH 376
            L + I+ IL +   ++  ++P  
Sbjct: 530 HLKHGIEKILYSNRVRVKLAVPFQ 553


>gi|262184631|ref|ZP_06044052.1| GTP-binding protein Era [Corynebacterium aurimucosum ATCC 700975]
          Length = 331

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 28/202 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  E   + + D
Sbjct: 31  EGFRSGF-VSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHPIRGLVHREDAQIVLVD 89

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFI 323
           T G+     ++ +   +       + D+I L    + K                     I
Sbjct: 90  TPGLHRPRTLLGERLNEVVKDTYADVDVIGLTIPADEKIGPGDRWILENVRKVAPKTPII 149

Query: 324 FIGTKSD-----------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
            I TK D                 L     +     +S+     L+EL   I   L    
Sbjct: 150 GIVTKLDKASKDQVGAQLVALHELLSEENPDAVVIPVSATERVQLDELTQVIVDHLPEGP 209

Query: 367 KKLPFSIPSHKRHLYHLSQTVR 388
           K  P    + +     +++ +R
Sbjct: 210 KFYPDDHITDEDQSKRIAELIR 231


>gi|254464339|ref|ZP_05077750.1| GTP-binding proten HflX [Rhodobacterales bacterium Y4I]
 gi|206685247|gb|EDZ45729.1| GTP-binding proten HflX [Rhodobacterales bacterium Y4I]
          Length = 423

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 100/266 (37%), Gaps = 25/266 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ M  +S + + L   W                   + +    +  + L  
Sbjct: 119 AATREGVLQVEMAALSYQRTRLVRAWTHLERQRGGLGFVGGPGETQIEADRRAIDDQLVR 178

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +    + +    +  +          + ++G++NAGKS+LFN L   +V    D+   T 
Sbjct: 179 LRRQLDKVVKTRTLHRASRAKVPYPIVALVGYTNAGKSTLFNRLTGAEVM-AKDMLFATL 237

Query: 256 DVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI---NSK 311
           D     ++L +G  + +SDT G             + T  EV  AD+IL +++I   +SK
Sbjct: 238 DPTMRRVELPDGPEIILSDTVGFISNLPTELVAAFRATLEEVLAADVILHVRDISHHDSK 297

Query: 312 KE----------ISFPKNIDFIFIGTKSDLYS----------TYTEEYDHLISSFTGEGL 351
           ++          +   +N   I +  K D                E+  H IS+ TGEGL
Sbjct: 298 QQAEDVEAILASLGVDENRVRIEVWNKLDQLPEEEAEARRQRAEREDGIHAISALTGEGL 357

Query: 352 EELINKIKSILSNKFKKLPFSIPSHK 377
           + L+  I   L     +   ++   +
Sbjct: 358 DGLLADIAEKLQGVRHEEVLTLTFAQ 383


>gi|329114580|ref|ZP_08243339.1| GTP-binding protein HflX [Acetobacter pomorum DM001]
 gi|326696060|gb|EGE47742.1| GTP-binding protein HflX [Acetobacter pomorum DM001]
          Length = 439

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 98/261 (37%), Gaps = 31/261 (11%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ +  +  + S L   W   L   R          E +       + + + 
Sbjct: 126 AATKEGTLQVELAHLEYQRSRLVRLWTH-LERQRGGFGFLGGPGETQI--EADRRMIGDR 182

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           I+ LK D+        L    R       + ++G++NAGKS+LFNAL    V    D   
Sbjct: 183 IVRLKKDLEQVRRTRGLHRQARKRVPFPVVALVGYTNAGKSTLFNALTGATV-YAQDQLF 241

Query: 253 TTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D     +DL  G  V +SDT G             + T  EV  AD+IL ++++   
Sbjct: 242 ATLDPTMRAIDLPSGRRVILSDTVGFISDLPTELIAAFRATLEEVAEADIILHVRDVAHP 301

Query: 312 KEISFPKN-------------------IDFIFIGTKSDLY----STYTEEYDHLISSFTG 348
              +  K+                      I +  K DL     +    E    IS+ TG
Sbjct: 302 DSAAQKKDVLGVLEGMAKDDMLEQDWPERIIEVLNKVDLLGGPEAIPQTEDTIAISAITG 361

Query: 349 EGLEELINKIKSILSNKFKKL 369
           +GLE L+ +I + ++   + +
Sbjct: 362 DGLETLLARIDARITQGMETV 382


>gi|92113404|ref|YP_573332.1| GTP-binding protein, HSR1-related [Chromohalobacter salexigens DSM
           3043]
 gi|91796494|gb|ABE58633.1| GTP-binding protein HflX [Chromohalobacter salexigens DSM 3043]
          Length = 439

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 118/357 (33%), Gaps = 38/357 (10%)

Query: 70  PSPESFTG----EDSAEF-HVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124
           P P++F G    E+  E   +HG   V   I          R         RA ++  +D
Sbjct: 53  PDPKTFIGSGKLEEIREIRELHGADIV---IFNHALSPSQERNLE------RALKSRVLD 103

Query: 125 LLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183
                       + T E + ++ +  +    + L   W   L   +  I        + +
Sbjct: 104 RTGLILDIFAQRARTHEGKLQVELAQLEYMSTRLVRGWTH-LERQKGGIGLRGPGETQLE 162

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243
                    +  I      + +   Q +          + ++G++NAGKS+LFNAL + +
Sbjct: 163 TDRRLLGARIKAIHKRLEKVRTQRDQNRRARARAEIPSVSLVGYTNAGKSTLFNALTESE 222

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           V    D    T D     L++     V ++DT G          E  + T  E   A L+
Sbjct: 223 V-YAADQLFATLDPTLRRLNVADVGPVVLADTVGFIRHLPHKLVESFRATLQEAAEASLL 281

Query: 303 LLLKE------------INSKKEISFPKNIDFIFIGTKSDLY--------STYTEEYDHL 342
           + + +            +++  E     ++  + +  K DL           +       
Sbjct: 282 VHVIDAADPDRDFNVAQVDTVLEEIGAGDVPQLLVMNKIDLLGTAPRLERDEHGRPRIVW 341

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           +S+    G E L   +  +L+    +   ++   +  L      +  ++    +E+ 
Sbjct: 342 LSAREARGFELLQEALGELLAEDLLETGLTLAPEQGRLRAALHELNAVQQEQFDEQG 398


>gi|331654128|ref|ZP_08355128.1| putative histone [Escherichia coli M718]
 gi|331047510|gb|EGI19587.1| putative histone [Escherichia coli M718]
          Length = 290

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRNILS--ELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQRVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELCTESVRGQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|225850095|ref|YP_002730329.1| GTP-binding protein HflX [Persephonella marina EX-H1]
 gi|225644920|gb|ACO03106.1| GTP-binding protein HflX [Persephonella marina EX-H1]
          Length = 373

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 28/170 (16%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275
           N  K+ ++G++NAGKS+L   L K+D   V+D    T D  T  +     G  V I+DT 
Sbjct: 193 NILKVSLVGYTNAGKSTLLKKLTKRD-TFVSDQLFATLDTKTSYIAFPDIGKKVLITDTV 251

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFI 323
           G  +       +    T  E+E+ADLIL + +I+ +  +   +            +   +
Sbjct: 252 GFVKNMPKELMDAFMATLEELEDADLILHVIDISDENWVEKMEAVEDILKKINVSDKPLV 311

Query: 324 FIGTKSDLY---STYTEEYDHLI----------SSFTGEGLEELINKIKS 360
            +  K D       Y EE DH +          S+  G  +++L N ++ 
Sbjct: 312 VVLNKIDKLVPSPEYIEEADHTMLTGDRETVVISTEKGWNIDKLHNILRK 361


>gi|89054736|ref|YP_510187.1| GTP-binding protein, HSR1-related [Jannaschia sp. CCS1]
 gi|88864285|gb|ABD55162.1| GTP-binding protein HflX [Jannaschia sp. CCS1]
          Length = 435

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 94/253 (37%), Gaps = 29/253 (11%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ +  +S + + L   W   L   R  +       E +       + +   
Sbjct: 131 AATREGVLQVELAALSYQRTRLVRAWTH-LERQRGGLGFVGGPGETQI--EADRRAIDEA 187

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  +K  ++  +    L    R       + ++G++NAGKS+LFN L   DV     +  
Sbjct: 188 VTRIKRQLAKVVKTRALHRSARAKVPYPIVALVGYTNAGKSTLFNRLTGADVMAKDMLFA 247

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T    +      +G  V +SDT G             + T  EV +ADLI+ +++I+  +
Sbjct: 248 TLDPTMRAVTLPDGTDVILSDTVGFISDLPTQLVAAFRATLEEVLDADLIVHVRDISHPQ 307

Query: 313 EISFPKNIDFIF-------------IGTKSDLYSTYTE----------EYDHLISSFTGE 349
            +   +++  I              +  K DL     +          E     S+ TG 
Sbjct: 308 TVEQAEDVHAILGDLGVSDQSAQLEVWNKVDLLDEAAQTARQVEADRNEAIFATSALTGA 367

Query: 350 GLEELINKIKSIL 362
           G+++ +  +   L
Sbjct: 368 GMDDFLTAVSHTL 380


>gi|228909528|ref|ZP_04073352.1| hypothetical protein bthur0013_36800 [Bacillus thuringiensis IBL
           200]
 gi|228850119|gb|EEM94949.1| hypothetical protein bthur0013_36800 [Bacillus thuringiensis IBL
           200]
          Length = 424

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 99/280 (35%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + + +    I + K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSSDPNYIGYEKTVKRLLSELEINHIPIITLYNKK 318

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  + +IK  +  + KK 
Sbjct: 319 DELYQNFIPFPKSDFLMTSAFEESDLLRIKEAIETQMKKG 358


>gi|289804516|ref|ZP_06535145.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 192

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 22/181 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  ++ + + ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGMNVDTIASIVRKHLPEAIHHFPEDYITDRSQ 190

Query: 380 L 380
            
Sbjct: 191 R 191


>gi|17561038|ref|NP_505523.1| hypothetical protein F46B6.4 [Caenorhabditis elegans]
 gi|3877202|emb|CAA94821.1| C. elegans protein F46B6.4, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 468

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 89/246 (36%), Gaps = 24/246 (9%)

Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI 196
           ++TE  R          +         K  H R  I   +D S   D+    ++ +    
Sbjct: 152 AKTEEARIQIAIAEIPYIKHRIHALSSKRLHSRPDIL-HID-SHYSDIDGDLNEILRKRE 209

Query: 197 LFLKNDISSHISQ--GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
             L+ ++     +  G+LG    +   + ++G++N+GK+SL   L         D    T
Sbjct: 210 QDLRKELKDVTRKNVGQLGVRNSSDAVVAVVGYTNSGKTSLVKKLTGAASLTPKDQLFAT 269

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D       L  G     +DT G      +      + T   V++AD+I+ L++I++   
Sbjct: 270 LDTTRHLAKLPSGRSAVFTDTIGFLSDLPMHLIAAFEATLAHVKSADVIIHLRDISNPDW 329

Query: 314 ISFPK----------------NIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEGLEEL 354
            +  +                N   I +  K D  S +          IS  TG+G+ EL
Sbjct: 330 KAQEEDVLATLKSIGVTDYVLNERIISVDNKIDKESAFPTSESNNSVRISCKTGDGMHEL 389

Query: 355 INKIKS 360
           I+ I  
Sbjct: 390 IDVIND 395


>gi|51244326|ref|YP_064210.1| GTP-binding protein [Desulfotalea psychrophila LSv54]
 gi|50875363|emb|CAG35203.1| related to GTP-binding protein [Desulfotalea psychrophila LSv54]
          Length = 199

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 19/180 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I +LG  N GKS L NAL  + V+ V+   G T D +    +L     V   DT G  
Sbjct: 21  LVITLLGRRNVGKSLLLNALCGQ-VSSVSSQEGATTDPVLKHYELLPLGPVTFYDTVGTD 79

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN-------SKKEISFPKNIDFIFIGTKSDL 331
           ++ ++     ++ +   V  +D+I+ +            + E+   + +  I +  K DL
Sbjct: 80  DSGELGLLR-VQASKKIVSRSDMIIFVVAGGRLTTGDMQELELLLRQKVPLILVQNKIDL 138

Query: 332 YSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           +    E               S+  G G++ L   + S + + F+  P  + S +R    
Sbjct: 139 HPVSQEIEQFCRLYGIACQAVSARQGRGIDALKATLISHVPDSFQHAPPLVSSGRRRCEQ 198


>gi|330831012|ref|YP_004393964.1| GTPase, HflX [Aeromonas veronii B565]
 gi|328806148|gb|AEB51347.1| GTPase, HflX [Aeromonas veronii B565]
          Length = 428

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 85/242 (35%), Gaps = 25/242 (10%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + +   I  +   +     Q + G   RN      + ++G++NAGKS+LFN L    V
Sbjct: 163 DRRLLRERIKAILRRLDKVAKQREQGRRARNRNEVPTVSLVGYTNAGKSTLFNQLTAASV 222

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T    L   +  +   V ++DT G             K T  E   ADL+L 
Sbjct: 223 YAADQLFATLDPTLRNLVIRDVGDVILADTVGFIRHLPHDLVAAFKATLQETREADLLLH 282

Query: 305 LKE---------INSKKEISF---PKNIDFIFIGTKSDLYSTYTEEYD---------HLI 343
           + +         I+S +++       +   + I  K D  +      +           +
Sbjct: 283 VVDCADEQMQENIDSVQQVLAEIEADDRPQLMICNKIDKLADRPAGLERDDEGRPLRVWL 342

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSH-KRHLYHLSQTVRYLEMASLNEKDCGL 402
           S+ TGEG E L   +  +L+         +P    R    L Q     +     E D  L
Sbjct: 343 SAQTGEGCEHLFTALTELLAGSMVHHTLQLPPSAARLRSALYQLKGIEQEGFSEEGDFVL 402

Query: 403 DI 404
           ++
Sbjct: 403 EV 404


>gi|283788475|ref|YP_003368340.1| GTP-binding protein [Citrobacter rodentium ICC168]
 gi|282951929|emb|CBG91650.1| putative GTP-binding protein [Citrobacter rodentium ICC168]
          Length = 303

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 30/273 (10%)

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+    +    + E +   L  L   +S HI +  L ++  +   I I+G S AGKSSL 
Sbjct: 8   FTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTHHEPVIGIMGKSGAGKSSLC 66

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLE 295
           NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ D   E E + R    
Sbjct: 67  NALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDI-- 124

Query: 296 VENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           +   DL+L L + + +         + I    +   +F+ T++D  +    E+D      
Sbjct: 125 LPELDLVLWLIKADDRALSVDEYFWRHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQP 183

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402
           +    + +  K    +   F+ +   +    R  + L   V  L  A  +     L    
Sbjct: 184 SPAQAQNIREK-TEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRL 242

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
             ++  E++R  +    + TG V      D IF
Sbjct: 243 QDELRTESVRSQARE--QFTGAV------DRIF 267


>gi|326562235|gb|EGE12563.1| GTP-binding protein Era [Moraxella catarrhalis 7169]
 gi|326565583|gb|EGE15746.1| GTP-binding protein Era [Moraxella catarrhalis 12P80B1]
 gi|326567189|gb|EGE17311.1| GTP-binding protein Era [Moraxella catarrhalis BC1]
 gi|326576293|gb|EGE26208.1| GTP-binding protein Era [Moraxella catarrhalis CO72]
          Length = 331

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 92/241 (38%), Gaps = 41/241 (17%)

Query: 200 KNDISSHIS--QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           ++ IS+          E  R G+ + I+G  N GKS+L N +  + ++I +  P TTR  
Sbjct: 11  EDTISAFFENRSTPKNESFRAGF-VAIVGRPNVGKSTLMNHMLGQKLSITSRKPQTTRHR 69

Query: 258 LTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVE--------------NADLI 302
           +   L  E   +   DT GI   +   + +   K     +                 D +
Sbjct: 70  IHGILTDEDRQIVFVDTPGIHSKEVRAINERMNKAAISALADVDVVLFVVDGIQWREDDL 129

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSD----------LYSTYTEEYDH----LISSFTG 348
           L L+++++        N+  I +  K+D          +  +++E +D      +S+   
Sbjct: 130 LTLEKLSAT-------NLPVILVINKADTVKDKSKLLPVIESFSESFDFADIIPVSALRR 182

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI-IAE 407
             L+ L + I   L  +         + +   +  S+ +R  ++  ++  +   D+ +  
Sbjct: 183 HNLDRLQSVIGEYLPIRPAIFDAEQITDRSERFLASEIIRE-KIMRISGDEVPYDLTVQI 241

Query: 408 N 408
           +
Sbjct: 242 D 242


>gi|86742193|ref|YP_482593.1| small GTP-binding protein domain-containing protein [Frankia sp.
           CcI3]
 gi|86569055|gb|ABD12864.1| GTP-binding protein HflX [Frankia sp. CcI3]
          Length = 486

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 91/268 (33%), Gaps = 28/268 (10%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHI------RSFIEADLDFSEEEDVQNFSSKE 191
           E + Q  L+       +      W + ++        R+ I        + +      + 
Sbjct: 183 EGKAQVELAQLQY---MLPRLRGWGESMSRAAASGGGRAPIGTRGPGETKIETDRRRLRA 239

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            +  +      +++     +          + I G++NAGKSSL N L    V +   + 
Sbjct: 240 RMARLRRELAAMTTVRETKRSARRRGEVPSVAIAGYTNAGKSSLLNRLTGAGVLVEDALF 299

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T    +      +G    ++DT G          E  + T  EV +ADLIL + + +S 
Sbjct: 300 ATLDPTVRRATLPDGRAFTLTDTVGFVRHLPHQIVEAFRSTLEEVADADLILHVVDGSSP 359

Query: 312 KEISFPK------------NIDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGLE 352
           +  +                +  + +  K D                   +S+ TGEGL 
Sbjct: 360 EPAAQISAVREVLNDIDAGGVPELIVVNKVDAVEPTVVAGLRQLAPDAVFVSARTGEGLA 419

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHL 380
            L++ + + + +   ++   +P  +  L
Sbjct: 420 ALVDALCARVPHPDVEMRVLVPYTRGDL 447


>gi|304391556|ref|ZP_07373498.1| GTP-binding protein HflX [Ahrensia sp. R2A130]
 gi|303295785|gb|EFL90143.1| GTP-binding protein HflX [Ahrensia sp. R2A130]
          Length = 455

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 92/271 (33%), Gaps = 32/271 (11%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T+  R    +  ++ +   L   W            +        + Q  S +  L 
Sbjct: 144 RAQTKEGRLQVELAHLNYQKGRLVRSWTHLERQRGGGGGSGGFLGGPGETQIESDRRQLQ 203

Query: 195 -DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             +  L+ ++        L    R       + ++G++NAGKS+LFN+L   +V    D+
Sbjct: 204 GKVNALEKELEKVRRTRTLHRSQRKRIPHPVVALVGYTNAGKSTLFNSLTGAEVM-AKDM 262

Query: 251 PGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D     L L  G    +SDT G             + T  EV  A+LIL +++I+
Sbjct: 263 LFATLDPTLRQLHLPQGTQAILSDTVGFVSDLPTHLVAAFRATLEEVIEAELILHVRDIS 322

Query: 310 SKKEISFPKNIDFIF---------------IGTKSDLYSTYTEEYDHLI----------S 344
                +  +++  I                +  K DL      E               S
Sbjct: 323 DSDTKAQAEDVYTILSQLGVGEDGHSRVVEVWNKIDLLDAEALEAIRATRTGNDAPLLVS 382

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           + TGEG   L+  ++  L      +   +  
Sbjct: 383 AVTGEGEGSLLELVEDKLGGSENVVDVVLAP 413


>gi|87118655|ref|ZP_01074554.1| GTP-binding protein Era [Marinomonas sp. MED121]
 gi|86166289|gb|EAQ67555.1| GTP-binding protein Era [Marinomonas sp. MED121]
          Length = 348

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 80/207 (38%), Gaps = 25/207 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280
           + I+G  N GKS+L N +  + ++I +  P TTR  +   +  +G++  I  DT G+   
Sbjct: 60  VAIVGRPNVGKSTLLNHVLGQKLSITSRKPQTTRQQILG-VKSQGHVQTIYVDTPGMHLG 118

Query: 281 DD-IVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFPKN-----IDFIFIGTKSD-- 330
           +   + +   K     + + D IL + +    ++++ S  +         + +  K D  
Sbjct: 119 EAKAINRFMNKTASSALADVDAILFVIDAERWTQEDQSVLEKVKLARCPVVLVVNKVDKL 178

Query: 331 ------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                       L           IS+  G+ L+ L   ++ ++    +  P    + + 
Sbjct: 179 EEKDNLLPTLAKLSELMNFAQIVPISALRGKNLDRLERLVEGMMPEGGQFYPEDQITDRS 238

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDII 405
             +  S+ VR      L  ++   ++ 
Sbjct: 239 SRFLASEIVREKITRQLG-QEVPYEVA 264


>gi|169829798|ref|YP_001699956.1| GTP-binding protein [Lysinibacillus sphaericus C3-41]
 gi|168994286|gb|ACA41826.1| GTP-binding protein [Lysinibacillus sphaericus C3-41]
          Length = 428

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 85/215 (39%), Gaps = 25/215 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALA-- 240
               +++ + I  +K D+     Q +     R       + I+G++NAGKS++ N L   
Sbjct: 169 ELDRRKIEDQIAKIKKDLEQVKDQRETQRKQRRKNALPVVSIVGYTNAGKSTIMNQLLAE 228

Query: 241 --KKDVAIVT--DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLE 295
             +++   V   D+   T +     ++L       ++DT G          +  + T  E
Sbjct: 229 IGQEEHKQVFEKDMLFATLETSVRQIELPDNKTFLLTDTVGFVSKLPHHLVKAFRSTLEE 288

Query: 296 VENADLILLLKEINSKKE------------ISFPKNIDFIFIGTKSDLYST---YTEEYD 340
             +ADL+L + ++++ +                 + I  I++  K+DL           +
Sbjct: 289 ARDADLLLHVVDVSNSEHGFMMDVTNETLKAVGVEGIPTIYVYNKADLAQVPYPVVSGDN 348

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
             +S+    GLEELI  I+  + + +      IP 
Sbjct: 349 IWVSAKEAVGLEELIQLIRQHIFSNYVTCEMLIPY 383


>gi|118478930|ref|YP_896081.1| GTP-binding protein [Bacillus thuringiensis str. Al Hakam]
 gi|118418155|gb|ABK86574.1| GTP-binding protein HflX [Bacillus thuringiensis str. Al Hakam]
          Length = 425

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 105/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 81  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 140

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 141 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 200

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 201 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 259

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 260 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHIPIITLYNKK 319

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F  + L  +   I++ +  +  +    IP  +
Sbjct: 320 DELHQNFIPFPKNDFLMTSAFEEKDLLHIKEAIEAKMKEEMNRYQVEIPPSE 371


>gi|308233978|ref|ZP_07664715.1| GTP-binding protein Era [Atopobium vaginae DSM 15829]
          Length = 297

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 9/124 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  + GKS+L NA     +AI + +  TTR  +   L  +   + I DT G+ +  
Sbjct: 7   VSLVGRPSVGKSTLLNACYGGKIAITSRVAQTTRRRMRAVLTDDSSQIVIVDTPGLHKPK 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
           D + KE  +    E+++ D++  L + + +           I        + + TK+D  
Sbjct: 67  DALGKELNQTALAELKDVDVVAHLIDASQEVGRGDAWVAHHIQQSLAPFKLLVITKADKV 126

Query: 333 STYT 336
              T
Sbjct: 127 DAAT 130


>gi|94311038|ref|YP_584248.1| small GTP-binding protein domain-containing protein [Cupriavidus
           metallidurans CH34]
 gi|93354890|gb|ABF08979.1| GTP-binding protein (putative GTPase) [Cupriavidus metallidurans
           CH34]
          Length = 411

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 83/221 (37%), Gaps = 29/221 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + + +    LK+D++    Q       R   +   I ++G++NAGKS+LFNAL K 
Sbjct: 165 ELDRRMLDDRAKRLKSDLARLQRQHHTQRRARARNDTLSISLVGYTNAGKSTLFNALTKA 224

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
             A   D    T D  +  L L+G+  V +SDT G             + T  E  +ADL
Sbjct: 225 -RAYAADQLFATLDTTSRRLFLDGFGNVVLSDTVGFIRDLPTQLVAAFRATLDETVHADL 283

Query: 302 ILLLKEINSK---KEIS---------FPKNIDFIFIGTKSDLYSTYTE------------ 337
           +L + + +S    ++I             +I  I +  K D      E            
Sbjct: 284 LLHVVDASSPVRHEQIEQVNRVLAEIDASDIPQIVVMNKIDAAPELLELGPRVERDEDGV 343

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                +S+  G GL+ L   I ++      +     P   R
Sbjct: 344 PTKVFVSARDGLGLDGLREAIVAMAQWLSSRPEAPAPYDPR 384


>gi|332670850|ref|YP_004453858.1| GTP-binding protein Era [Cellulomonas fimi ATCC 484]
 gi|332339888|gb|AEE46471.1| GTP-binding protein Era [Cellulomonas fimi ATCC 484]
          Length = 304

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 28/220 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+    +G  NAGKS+L NAL  + VAI +  P TTR  +   +      + + DT G
Sbjct: 4   RSGF-ACFVGRPNAGKSTLTNALVGQKVAITSGRPQTTRHTVRGIVHRPDAQLVLVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFI 323
           +     ++ +         +   D++      + +             +     +    +
Sbjct: 63  LHRPRTLLGERLNDLVKDTLTEVDVVGFCLPADQRVGPGDRFIAEQLSELARDGRGTPVV 122

Query: 324 FIGTKSDL------------YSTYTEEYDH-LISSFTGEGLEELINKIKSILSNKFKKLP 370
            + TK DL                 E  D   +S+ +G  ++ L + +   L       P
Sbjct: 123 AVVTKGDLVGKGRLAEHLLAVQNLGEWADIVPVSAVSGYQVKVLEDVLVGHLPEGPALYP 182

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAENL 409
               + +     +++ VR   +  + +E    L ++ E +
Sbjct: 183 EGELTDEPEAVMVAELVREAALEGVRDELPHSLAVVVEEI 222


>gi|268323683|emb|CBH37271.1| putative iron(II) transport protein B [uncultured archaeon]
          Length = 573

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI ++G  N GKS +F+ L   +V I ++ PGTT D       + G   ++ D  G    
Sbjct: 3   KISLMGCPNVGKSVVFSRLTGVNV-ISSNYPGTTVDFTKGTTRIGGEKFELVDVPGTYSL 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE------------------ISFPKNIDF 322
           +   + E + RT   +E+AD+++ + +    +                   ++       
Sbjct: 62  EPTSKAEEVARTM--LEDADIVINVVDATHLERNLYLTLEILARKKPTVVALNLWDETKH 119

Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
           I I    D      +       + TGEG++EL +K+   
Sbjct: 120 IGIDIDPDKLEKLLDVPIVPTCAITGEGIKELSSKLSDA 158


>gi|83953588|ref|ZP_00962309.1| GTP-binding protein HflX [Sulfitobacter sp. NAS-14.1]
 gi|83841533|gb|EAP80702.1| GTP-binding protein HflX [Sulfitobacter sp. NAS-14.1]
          Length = 412

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 92/263 (34%), Gaps = 23/263 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ M  ++ + + L   W                   + +    +  E L  
Sbjct: 108 AATREGVLQVEMAALNYQRTRLVRAWTHLERQRGGLGFVGGPGETQIESDRRAIDEQLVR 167

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +    + +    +  +          + ++G++NAGKS+LFN +   DV     +  T  
Sbjct: 168 LRRQLDKVVKTRALHRAARAKVPFPIVALVGYTNAGKSTLFNRMTGADVMAKDMLFATLD 227

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--- 312
             +   +  +G  + +SDT G             + T  EV  AD+I  +++I+  +   
Sbjct: 228 PTMRSLVLPDGPEIILSDTVGFISDLPTELVAAFRATLEEVLAADIICHVRDISHAETES 287

Query: 313 ----------EISFPKNIDFIFIGTKSD----------LYSTYTEEYDHLISSFTGEGLE 352
                      +  PK+     +  K D                ++    IS+ TGEGLE
Sbjct: 288 QARNVRDILTSLGVPKDTRSFEVWNKLDQLDDDRAAAVRARAQRDDSVLAISAITGEGLE 347

Query: 353 ELINKIKSILSNKFKKLPFSIPS 375
           EL   I   L    ++   ++  
Sbjct: 348 ELQAVIAEALQGAVREAELTLAF 370


>gi|114564471|ref|YP_751985.1| GTP-binding protein, HSR1-related [Shewanella frigidimarina NCIMB
           400]
 gi|114335764|gb|ABI73146.1| GTP-binding protein, HSR1-related [Shewanella frigidimarina NCIMB
           400]
          Length = 435

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 107/312 (34%), Gaps = 32/312 (10%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T   +    +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKMQVELAQLRHMSTRLIRGWTH-LERQKGGIGMRGPGETQLETDRRLLRGRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I    + +     Q +      +   + ++G++NAGKS+LFNAL   DV    D    T
Sbjct: 173 NINRRLDKVDKQREQSRRARKRSDLATVSLVGYTNAGKSTLFNALTSSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------- 307
            D     L L    V ++DT G             K T  E   A+++L + +       
Sbjct: 232 LDPTLRKLSLPDGAVILADTVGFIRHLPHDLVAAFKATLQETRQAEILLHVVDCADDNMT 291

Query: 308 -----INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEE 353
                +    E      I  + +  K DL   +    D+          +S+    G + 
Sbjct: 292 ENFDQVQKVLEEIDADEITQLIVCNKIDLLEDFAPRIDYDEDGKPERVWVSAQKRIGFDL 351

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL---- 409
           L+  I  ++     +L   IP+   H  +L Q  R   +      D G  I++  L    
Sbjct: 352 LLKAITELIGEVICELTLKIPASAGH--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDAN 409

Query: 410 --RLASVSLGKI 419
             RLA  S G++
Sbjct: 410 WRRLAKQSQGEL 421


>gi|290473402|ref|YP_003466268.1| putative GTPase subunit of protease with nucleoside triP hydrolase
           domain, together with HflC-HflK involved in stability of
           phage lambda cII repressor [Xenorhabdus bovienii
           SS-2004]
 gi|289172701|emb|CBJ79472.1| putative GTPase subunit of protease with nucleoside triP hydrolase
           domain, together with HflC-HflK involved in stability of
           phage lambda cII repressor [Xenorhabdus bovienii
           SS-2004]
          Length = 426

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ + 
Sbjct: 114 RARTHEGKLQVELAQLRHLSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDKIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+      +   + ++G++NAGKSSLFN +   +V    D    T
Sbjct: 173 QILGRLGKVEKQREQGRQARNKADIPTVSLVGYTNAGKSSLFNRITSAEV-YTADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+     V ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVNDVGTVVLADTVGFIRHLPHDLVAAFKATLQETRQARLLLHVVDAADSRL 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 ++S  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 DENIVAVDSVLEEIEANEIPSLLVMNKIDMLEDFVPRIDRDEENRPIRVWLSAQTGAGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            L   +   LS +       +P      R  ++  Q + 
Sbjct: 352 LLFQVLTECLSGEIAHYELHLPPEAGRLRSRFYQLQAIE 390


>gi|219124036|ref|XP_002182319.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406280|gb|EEC46220.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 306

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G  N GKS+L NAL ++D+ I T  P TTR  +   +  +   V + DT G+ E     
Sbjct: 1   MGAPNMGKSTLLNALLEEDLCIATARPQTTRHAILGLMSTDKCQVCLVDTPGVIEDPAYE 60

Query: 285 EKEGIKRTFL-EVENADLILLLKEI------NSKKEISFPKNIDFIFIG-TKSDLYSTYT 336
            +EG+       V  +D++L++ ++      + +  +   +    + +   K DL     
Sbjct: 61  LQEGMMEAVTGAVATSDVLLVVTDVFSTPIPDDELFLKVQRTRKPVLVAINKIDLAKKVN 120

Query: 337 EEYD 340
           +  +
Sbjct: 121 KAAE 124


>gi|145482289|ref|XP_001427167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394246|emb|CAK59769.1| unnamed protein product [Paramecium tetraurelia]
          Length = 608

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 97/223 (43%), Gaps = 29/223 (13%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            + +  +  L  +     S+ K  ++I    +I ++G++NAGKS L N + +KDV    D
Sbjct: 324 DDRIAKVKKLIEEECQQRSKIKRKKLIHTVPRIALIGYTNAGKSQLLNCILQKDVVQSKD 383

Query: 250 IPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           +   T D  +  + L  G    + DT G          E  K T  EVE+AD++L +++I
Sbjct: 384 LLFQTLDTTSKSIRLASGQKAIMLDTIGFITDLPHDLVESFKCTLEEVEDADIVLHIRDI 443

Query: 309 NSK-------------KEISFPK---NIDFIFIGTKSDLYS-----TYTEEYDHLI---S 344
           +               KE+ F +   N   I +  K DL S      + E  D+ I   S
Sbjct: 444 SHPCTEQQKQVVLDVLKELGFNQDFYNKKMIEVWNKIDLMSYPIDYEFIESQDYPIVPVS 503

Query: 345 SFTGEGLEELINKIKS----ILSNKFKKLPFSIPSHKRHLYHL 383
           +     +++L+  ++     IL+ K  ++ ++I  H   L  L
Sbjct: 504 ALMNINIKKLLQVMEEKSNQILNKKLYRIRYNIEQHFERLRWL 546


>gi|294637612|ref|ZP_06715891.1| GTP-binding protein Era [Edwardsiella tarda ATCC 23685]
 gi|291089167|gb|EFE21728.1| GTP-binding protein Era [Edwardsiella tarda ATCC 23685]
          Length = 176

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 8/130 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----NIDFIFIGTKSDLYS 333
              + +   +     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNRAASSSIGDVELVIFVVEGTHWTPDDEMVVNKLRDLKCPVILAINKVDNVV 130

Query: 334 TYTEEYDHLI 343
             T    H+ 
Sbjct: 131 DKTALLPHIQ 140


>gi|296130043|ref|YP_003637293.1| GTP-binding protein Era [Cellulomonas flavigena DSM 20109]
 gi|296021858|gb|ADG75094.1| GTP-binding protein Era [Cellulomonas flavigena DSM 20109]
          Length = 306

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   ++G  N GKS+L NAL  + VAI +  P TTR V+   +  E   + + DT G
Sbjct: 4   RSGF-ACLVGRPNTGKSTLTNALVGQKVAITSGRPQTTRHVVRGIVHREDAQLVLVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           +     ++ +         +   D+I      + K
Sbjct: 63  LHRPRTLLGERLNDLVRDTLTEVDVIGFCLPADEK 97


>gi|254974410|ref|ZP_05270882.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-66c26]
 gi|255091801|ref|ZP_05321279.1| putative ATP/GTP-binding protein [Clostridium difficile CIP 107932]
 gi|255313536|ref|ZP_05355119.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-76w55]
 gi|255516221|ref|ZP_05383897.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-97b34]
 gi|255649318|ref|ZP_05396220.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-37x79]
 gi|260682488|ref|YP_003213773.1| putative ATP/GTP-binding protein [Clostridium difficile CD196]
 gi|260686087|ref|YP_003217220.1| putative ATP/GTP-binding protein [Clostridium difficile R20291]
 gi|306519413|ref|ZP_07405760.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-32g58]
 gi|260208651|emb|CBA61408.1| putative ATP/GTP-binding protein [Clostridium difficile CD196]
 gi|260212103|emb|CBE02716.1| putative ATP/GTP-binding protein [Clostridium difficile R20291]
          Length = 427

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 29/247 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAK- 241
               + +LN    ++ ++       +   + R   N   + ++G++NAGKS+L N L K 
Sbjct: 165 EIDKRHILNKAADIRRELKEVKKNRETQRVKRLKSNIPIVALVGYTNAGKSTLLNELIKT 224

Query: 242 ------KDVAIVTDIPGTTRDV-LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
                 +    V D+   T DV L   L        + DT G          E  K T  
Sbjct: 225 HKDYEQEKEVFVKDMLFATLDVTLRKALLPNKKEFLVVDTVGFVSKLPHDLVEAFKATLE 284

Query: 295 EVENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYS----TYTE 337
           EV+ ADLIL + +  +              KE+    +   I +  K D         ++
Sbjct: 285 EVQYADLILHVIDATNTSYELQKSTTEGVLKELGV-NDKKHILVYNKVDKLELDIYPKSQ 343

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
           E    IS+  G  +++L+N I+  L      +   +P  +  ++   +    +E     E
Sbjct: 344 EDIVYISAKQGINMDKLLNMIEIALMENTYSVSLMLPYERGDIFSRIKDKYNVENFEYGE 403

Query: 398 KDCGLDI 404
               LD+
Sbjct: 404 NGITLDV 410


>gi|52141781|ref|YP_085048.1| GTP-binding protein [Bacillus cereus E33L]
 gi|51975250|gb|AAU16800.1| GTP-binding protein [Bacillus cereus E33L]
          Length = 425

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 106/292 (36%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQW-------IDKL 165
           N ++ L +  +L+ ++ +      Q  L   +       G+L     Q        + + 
Sbjct: 81  NNELTLSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 140

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKI 222
             +             E       + + + +  +K  ++    H  + +        +++
Sbjct: 141 LSLSRLGGGIGTRGPGETKLETDRRHIRSRVDEIKKQLAVVVEHRKRYRERRKDNKVFQV 200

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 201 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 259

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 260 PTSLIAAFRSTLEEAGEADVILHVVDAADPNYVGHEKTVKQLLSELEINHIPIITLYNKK 319

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F  + L  +   I++ +  +  +    IP  +
Sbjct: 320 DELHQNFIPFPKNDFLMTSAFEEKDLLHIKEAIETKMKEEMNRYQVEIPPSE 371


>gi|54023403|ref|YP_117645.1| GTP-binding protein Era [Nocardia farcinica IFM 10152]
 gi|54014911|dbj|BAD56281.1| putative GTP-binding protein [Nocardia farcinica IFM 10152]
          Length = 305

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 78/217 (35%), Gaps = 26/217 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL    +AI +  P TTR  +   +  E   + + DT G
Sbjct: 11  RSGF-VCFVGRPNTGKSTLTNALVGAKIAITSSRPQTTRHTIRGIVHREHAQLILVDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIG 326
           +     ++ +             D+I +    + K          +          + + 
Sbjct: 70  LHRPRTLLGQRLNDLVRDTYSEVDVIAICIPADEKIGPGDRWIVQQVKQMAPKTTLLGVV 129

Query: 327 TKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           TK D                    +     +S+  GE +E L++ I + +       P  
Sbjct: 130 TKIDKVGRQQVAEQLLAVSELLGPQAEVVPVSAVRGEQVEVLVDVIAAKMPEGPAFYPDG 189

Query: 373 IPSHKRHLYHLSQTVRYLEMASL-NEKDCGLDIIAEN 408
             + +     +++ +R   +  + +E    L ++ E 
Sbjct: 190 ELTDEPEETLMAELIREAALEGVRDELPHSLAVVIEE 226


>gi|299133863|ref|ZP_07027057.1| GTP-binding proten HflX [Afipia sp. 1NLS2]
 gi|298591699|gb|EFI51900.1| GTP-binding proten HflX [Afipia sp. 1NLS2]
          Length = 464

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 33/209 (15%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   I  ++ND+    +  +L    R       + ++G++NAGKS+LFN L + 
Sbjct: 192 EADRRMIGERITRIENDLKKVQATRRLHRAGRQRVPYRVVALVGYTNAGKSTLFNRLTRA 251

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV    D+   T D     L L  G    ISDT G       +     + T  EV  AD+
Sbjct: 252 DVQ-AADMLFATLDPTLRALKLPHGGKAMISDTVGFISDLPTMLVAAFRATLEEVIEADV 310

Query: 302 ILLLKEINSKK---------------EISFPKNIDFIFIGTKSDLYSTYTEE-------- 338
           IL +++I+ +                 I        I +  K D +S    E        
Sbjct: 311 ILHVRDISHEDAEAQERDVDQVLRQLNIDTDSGHRLIEVWNKIDRFSPEERENLARIAAR 370

Query: 339 -----YDHLISSFTGEGLEELINKIKSIL 362
                   L+S+ TGEG+E L+  I+  L
Sbjct: 371 RPPERPCFLVSAETGEGVEALLEAIEERL 399


>gi|225865681|ref|YP_002751059.1| GTP-binding protein [Bacillus cereus 03BB102]
 gi|225786196|gb|ACO26413.1| GTP-binding protein [Bacillus cereus 03BB102]
          Length = 425

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 105/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 81  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 140

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 141 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 200

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 201 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 259

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 260 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSDLEINHIPIITLYNKK 319

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F  + L  +   I++ +  +  +    IP  +
Sbjct: 320 DELHQNFIPFPKNDFLMTSAFEEKDLLHIKEAIETKMKEEMNRYQVEIPPSE 371


>gi|222097161|ref|YP_002531218.1| gtp-binding protein (hflx) [Bacillus cereus Q1]
 gi|229140349|ref|ZP_04268904.1| hypothetical protein bcere0013_34480 [Bacillus cereus BDRD-ST26]
 gi|221241219|gb|ACM13929.1| GTP-binding protein (hflX) [Bacillus cereus Q1]
 gi|228642910|gb|EEK99186.1| hypothetical protein bcere0013_34480 [Bacillus cereus BDRD-ST26]
          Length = 424

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 104/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQW-------IDKL 165
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q        + + 
Sbjct: 80  NNELTPSQIRNLSAVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKI 222
             +             E       + +   +  +K  ++    H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRARVDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F  + L  +   I++ +  +  +    IP  +
Sbjct: 319 DELHQNFIPFPKNDFLMTSAFEEKDLLHIKEAIETKMKEEMNRYQVEIPPSE 370


>gi|206978301|ref|ZP_03239178.1| GTP-binding protein [Bacillus cereus H3081.97]
 gi|217961131|ref|YP_002339699.1| GTP-binding protein [Bacillus cereus AH187]
 gi|206743505|gb|EDZ54935.1| GTP-binding protein [Bacillus cereus H3081.97]
 gi|217063572|gb|ACJ77822.1| GTP-binding protein [Bacillus cereus AH187]
          Length = 425

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 104/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQW-------IDKL 165
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q        + + 
Sbjct: 81  NNELTPSQIRNLSAVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 140

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKI 222
             +             E       + +   +  +K  ++    H  + +        +++
Sbjct: 141 LSLSRLGGGIGTRGPGETKLETDRRHIRARVDEIKKQLAVVVEHRKRYRERRKDNKVFQV 200

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 201 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 259

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 260 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHIPIITLYNKK 319

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F  + L  +   I++ +  +  +    IP  +
Sbjct: 320 DELHQNFIPFPKNDFLMTSAFEEKDLLHIKEAIETKMKEEMNRYQVEIPPSE 371


>gi|223043263|ref|ZP_03613310.1| GTP-binding protein HflX [Staphylococcus capitis SK14]
 gi|222443474|gb|EEE49572.1| GTP-binding protein HflX [Staphylococcus capitis SK14]
          Length = 411

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 99/249 (39%), Gaps = 17/249 (6%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + +     ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 120 LRARSREGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 178

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++     D+   
Sbjct: 179 NEIKHQLQSVVEHRERYRNKREQNQVFQVALVGYTNAGKSSWFNVLANEE-TYEKDLLFA 237

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T  + + EG+ + ISDT G  +          K T  E ++ADL+L + + +  +
Sbjct: 238 TLDPKTRKIQINEGFNLIISDTVGFIQKLPTTLVAAFKSTLEEAKDADLLLHVVDASHPE 297

Query: 313 ---------EISFPKNIDFI---FIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKIK 359
                    +I    N+D I    I  K DL +   E         F     E   +K++
Sbjct: 298 HRTQYDTVNQIIDDLNMDQIPQVVIFNKKDLCTEAQEAPVAKSPYVFVSSRDENDKDKVR 357

Query: 360 SILSNKFKK 368
           +++ ++ K 
Sbjct: 358 NLMIDEIKH 366


>gi|301330436|ref|ZP_07223060.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|300843591|gb|EFK71351.1| conserved hypothetical protein [Escherichia coli MS 78-1]
          Length = 309

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 30/273 (10%)

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+    +    + E +   L  L   +S HI +  L ++  +   I I+G S AGKSSL 
Sbjct: 14  FTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLC 72

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLE 295
           NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ D   E E + R    
Sbjct: 73  NALFQGEVTPVSDVHAGTREVRRFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDI-- 130

Query: 296 VENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           +   DL+L L + + +         + I    +   +F+ T++D  +    E+D      
Sbjct: 131 LPELDLVLWLIKADDRALSVDEYFWRHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQP 189

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402
           +    + +  K    +   F+ +   +    R  + L   V  L  A  +     L    
Sbjct: 190 SPAQAQNIREK-TEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRL 248

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
             ++  E++R  +    + TG V      D IF
Sbjct: 249 QDELRTESVRAQARE--QFTGAV------DRIF 273


>gi|308804996|ref|XP_003079810.1| GTP-binding family protein (ISS) [Ostreococcus tauri]
 gi|116058267|emb|CAL53456.1| GTP-binding family protein (ISS) [Ostreococcus tauri]
          Length = 358

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 100/263 (38%), Gaps = 25/263 (9%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE-DVQNFSSKEVLNDILF 198
           E Q ++ +  +  ++  L   W      +           E++ +V     +E  + +  
Sbjct: 45  EGQLQVELAQLEYQMPRLSKMWSHLERQVGGGKGNVKGMGEKQLEVDKRLLRERKSLLTA 104

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
               + +H  Q +          + + G++NAGKS+L N L K DV +  D    T D  
Sbjct: 105 KIESVRTHREQYRQKRKAERIPIVSLAGYTNAGKSTLLNKLTKSDV-LAEDKLFATLDPT 163

Query: 259 TIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------ 311
           T  L L  G  V ++DT G  +          + T  EV  + LIL + +I+S+      
Sbjct: 164 TRRLGLPNGMSVLMTDTVGFIQKLPTQLVAAFRATLEEVLESSLILHVVDISSELAEVQM 223

Query: 312 ------KEISFPKNIDFIFIGTKSDLYSTYTE----------EYDHLISSFTGEGLEELI 355
                        +I  + +  K DL +   +              LIS+ TGEGL+ L 
Sbjct: 224 SAVNNVLGELDASHIPQLLVWNKIDLVTDEEKMLEIEIAAEAAGAVLISTHTGEGLDALQ 283

Query: 356 NKIKSILSNKFKKLPFSIPSHKR 378
            K+ +I+          +  ++R
Sbjct: 284 EKVSAIIMRSALTRCELLVPYER 306


>gi|24372195|ref|NP_716237.1| GTP-binding protein HflX [Shewanella oneidensis MR-1]
 gi|24346104|gb|AAN53682.1|AE015507_8 GTP-binding protein HflX [Shewanella oneidensis MR-1]
          Length = 435

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 111/313 (35%), Gaps = 34/313 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I      +     Q +      +   + ++G++NAGKS+LFNAL   DV    D    T
Sbjct: 173 NINKRLERVDKQREQSRRARKRSDMPTVSLVGYTNAGKSTLFNALTSSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
            D     LDL    V ++DT G             K T  E   A+L+L + +   +   
Sbjct: 232 LDPTLRKLDLPDGAVILADTVGFIRHLPHDLVAAFKATLQETRQAELLLHIVDCADENMA 291

Query: 312 ----------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLE 352
                     KEI   + +    +  K DL    T   ++          +S+    G +
Sbjct: 292 DNFEQVQSVLKEIDADEVMQL-IVCNKIDLLEDVTPRIEYDDRGKPVRVWVSAHKRLGFD 350

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL--- 409
            L+  I  ++     +    IP+   H  +L Q  R   +      D G  I++  L   
Sbjct: 351 LLLKAITELIGEVIHEFTLRIPATAGH--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDA 408

Query: 410 ---RLASVSLGKI 419
              RLA  S G++
Sbjct: 409 DWRRLAKQSQGEL 421


>gi|229185934|ref|ZP_04313106.1| hypothetical protein bcere0004_34820 [Bacillus cereus BGSC 6E1]
 gi|228597538|gb|EEK55186.1| hypothetical protein bcere0004_34820 [Bacillus cereus BGSC 6E1]
          Length = 424

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 105/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSDLEINHIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F  + L  +   I++ +  +  +    IP  +
Sbjct: 319 DELHQNFIPFPKNDFLMTSAFEEKDLLHIKEAIETKMKEEMNRYQVEIPPSE 370


>gi|228916336|ref|ZP_04079906.1| hypothetical protein bthur0012_35520 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228928753|ref|ZP_04091788.1| hypothetical protein bthur0010_34460 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935004|ref|ZP_04097835.1| hypothetical protein bthur0009_34580 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228947368|ref|ZP_04109660.1| hypothetical protein bthur0007_34970 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229092733|ref|ZP_04223878.1| hypothetical protein bcere0021_34900 [Bacillus cereus Rock3-42]
 gi|229123221|ref|ZP_04252426.1| hypothetical protein bcere0016_35100 [Bacillus cereus 95/8201]
 gi|254683587|ref|ZP_05147447.1| GTP-binding protein (hflX) [Bacillus anthracis str. CNEVA-9066]
 gi|254739560|ref|ZP_05197255.1| GTP-binding protein (hflX) [Bacillus anthracis str. Kruger B]
 gi|301055197|ref|YP_003793408.1| GTP-binding protein [Bacillus anthracis CI]
 gi|228660236|gb|EEL15871.1| hypothetical protein bcere0016_35100 [Bacillus cereus 95/8201]
 gi|228690659|gb|EEL44437.1| hypothetical protein bcere0021_34900 [Bacillus cereus Rock3-42]
 gi|228812309|gb|EEM58638.1| hypothetical protein bthur0007_34970 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228824904|gb|EEM70705.1| hypothetical protein bthur0009_34580 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830908|gb|EEM76510.1| hypothetical protein bthur0010_34460 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228843534|gb|EEM88612.1| hypothetical protein bthur0012_35520 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300377366|gb|ADK06270.1| GTP-binding protein [Bacillus cereus biovar anthracis str. CI]
          Length = 424

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 105/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F  + L  +   I++ +  +  +    IP  +
Sbjct: 319 DELHQNFIPFPKNDFLMTSAFEEKDLLHIKEAIETKMKEEMNRYQVEIPPSE 370


>gi|49479206|ref|YP_037773.1| GTP-binding protein (hflX) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|167636061|ref|ZP_02394367.1| GTP-binding protein [Bacillus anthracis str. A0442]
 gi|170689290|ref|ZP_02880485.1| GTP-binding protein [Bacillus anthracis str. A0465]
 gi|196034242|ref|ZP_03101652.1| GTP-binding protein [Bacillus cereus W]
 gi|196038329|ref|ZP_03105638.1| GTP-binding protein [Bacillus cereus NVH0597-99]
 gi|196044450|ref|ZP_03111685.1| GTP-binding protein [Bacillus cereus 03BB108]
 gi|254721131|ref|ZP_05182922.1| GTP-binding protein (hflX) [Bacillus anthracis str. A1055]
 gi|49330762|gb|AAT61408.1| GTP-binding protein (hflX) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|167528573|gb|EDR91335.1| GTP-binding protein [Bacillus anthracis str. A0442]
 gi|170666748|gb|EDT17516.1| GTP-binding protein [Bacillus anthracis str. A0465]
 gi|195993316|gb|EDX57274.1| GTP-binding protein [Bacillus cereus W]
 gi|196024485|gb|EDX63157.1| GTP-binding protein [Bacillus cereus 03BB108]
 gi|196030737|gb|EDX69335.1| GTP-binding protein [Bacillus cereus NVH0597-99]
          Length = 425

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 105/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 81  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 140

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 141 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 200

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 201 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 259

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 260 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHIPIITLYNKK 319

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F  + L  +   I++ +  +  +    IP  +
Sbjct: 320 DELHQNFIPFPKNDFLMTSAFEEKDLLHIKEAIETKMKEEMNRYQVEIPPSE 371


>gi|229197814|ref|ZP_04324531.1| hypothetical protein bcere0001_33500 [Bacillus cereus m1293]
 gi|228585664|gb|EEK43765.1| hypothetical protein bcere0001_33500 [Bacillus cereus m1293]
          Length = 424

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 104/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQW-------IDKL 165
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q        + + 
Sbjct: 80  NNELTPSQIRNLSAVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKI 222
             +             E       + +   +  +K  ++    H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRARVDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F  + L  +   I++ +  +  +    IP  +
Sbjct: 319 DELHQNFIPFPKNDFLMTSAFEEKDLLHIKEAIETKMKEEMNRYQVEIPPSE 370


>gi|150009872|ref|YP_001304615.1| GTP-binding protein HflX [Parabacteroides distasonis ATCC 8503]
 gi|255012877|ref|ZP_05285003.1| GTP-binding protein HflX [Bacteroides sp. 2_1_7]
 gi|256838419|ref|ZP_05543929.1| GTP-binding protein HflX [Parabacteroides sp. D13]
 gi|262382852|ref|ZP_06075989.1| GTP-binding protein HflX [Bacteroides sp. 2_1_33B]
 gi|298374226|ref|ZP_06984184.1| GTP-binding protein HflX [Bacteroides sp. 3_1_19]
 gi|301312397|ref|ZP_07218313.1| GTP-binding protein HflX [Bacteroides sp. 20_3]
 gi|149938296|gb|ABR44993.1| GTP-binding protein HflX [Parabacteroides distasonis ATCC 8503]
 gi|256739338|gb|EEU52662.1| GTP-binding protein HflX [Parabacteroides sp. D13]
 gi|262295730|gb|EEY83661.1| GTP-binding protein HflX [Bacteroides sp. 2_1_33B]
 gi|298268594|gb|EFI10249.1| GTP-binding protein HflX [Bacteroides sp. 3_1_19]
 gi|300829580|gb|EFK60234.1| GTP-binding protein HflX [Bacteroides sp. 20_3]
          Length = 403

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 20/213 (9%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + +L+ I  LK ++     Q  +    R    ++ ++G++N GKS+L N L+K +V  
Sbjct: 169 DKRIILDKIARLKKELVDIDKQKSVQRKNRGKMVRVALVGYTNVGKSTLMNLLSKSEV-F 227

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + +E     +SDT G          E  K T  EV  ADL++ + 
Sbjct: 228 AENKLFATLDTTVRKVIIENLPFLLSDTVGFIRKLPTELVESFKSTLDEVREADLLVHIV 287

Query: 307 EINS---KKEISFPK---------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           +I+    +++I                 I +  K D ++   +E D      T  G E +
Sbjct: 288 DISHPTFEEQIEVVNRTLAEIDKTEKPMIMVFNKVDAFTFVPKEED----DLTPRGRENI 343

Query: 355 -INKIKSILSNKFKKLPFSIPSHKR-HLYHLSQ 385
            ++++K     K +     I + +R ++  L +
Sbjct: 344 DLDELKRTWMGKLQDNCIFISAKERTNIEALKE 376


>gi|296113913|ref|YP_003627851.1| GTP-binding protein Era [Moraxella catarrhalis RH4]
 gi|295921607|gb|ADG61958.1| GTP-binding protein Era [Moraxella catarrhalis RH4]
 gi|326561463|gb|EGE11813.1| GTP-binding protein Era [Moraxella catarrhalis 46P47B1]
 gi|326568471|gb|EGE18551.1| GTP-binding protein Era [Moraxella catarrhalis BC7]
          Length = 331

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 88/227 (38%), Gaps = 39/227 (17%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
             E  R G+ + I+G  N GKS+L N +  + ++I +  P TTR  +   L  E   +  
Sbjct: 25  KNESFRAGF-VAIVGRPNVGKSTLMNHMLGQKLSITSRKPQTTRHRIHGILTDEDRQIVF 83

Query: 272 SDTAGIRETD-DIVEKEGIKRTFLEVE--------------NADLILLLKEINSKKEISF 316
            DT GI   +  ++ +   K     +                 D +L L+++++      
Sbjct: 84  VDTPGIHSKEVRVINERMNKAAISALADVDVVLFVVDGIQWREDDLLTLEKLSAT----- 138

Query: 317 PKNIDFIFIGTKSD----------LYSTYTEEYDH----LISSFTGEGLEELINKIKSIL 362
             N+  I +  K+D          +  +++E +D      +S+     L+ L + I   L
Sbjct: 139 --NLPVILVINKADTVKDKSKLLPVIESFSESFDFADIIPVSALRRHNLDRLQSVIGEYL 196

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
             +         + +   +  S+ +R  ++  ++  +   D+ +  +
Sbjct: 197 PIRPAIFDAEQITDRSERFLASEIIRE-KIMRISGDEVPYDLTVQID 242


>gi|260583705|ref|ZP_05851453.1| GTP-binding protein HflX [Granulicatella elegans ATCC 700633]
 gi|260158331|gb|EEW93399.1| GTP-binding protein HflX [Granulicatella elegans ATCC 700633]
          Length = 404

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 114/308 (37%), Gaps = 38/308 (12%)

Query: 126 LEAESLADLISSETEMQRRLSM-------EGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
            + ++L + I++    + +L +           G+L     Q    L  +     A    
Sbjct: 86  SQTKNLNETINARIIDRVQLILDIFAMRARSKEGKLQVQLAQLNYLLPRLSGQGTALSRQ 145

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR----------NGYKIVILGHS 228
                 +     ++  D   ++  IS   +Q +  ++ R          NG+++ ++G++
Sbjct: 146 GGGIGTRGPGETQLETDKRHIRKQISDIEAQLEQTKLHRQRSRMKRNRSNGFRMGLIGYT 205

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKE 287
           NAGKS++ N L       +  +   T D LT  +DL   Y V ++DT G  +        
Sbjct: 206 NAGKSTVLNQLTDAGTYQMDQLFA-TLDPLTRKVDLADQYDVTLTDTVGFIQDLPTTLIH 264

Query: 288 GIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY 335
             + T  E  + DL++ + + +S   +   K             I  + I  KSDL    
Sbjct: 265 AFESTLEESADVDLLVHVVDASSPNFLMHEKTVHDLVEDLEMETIPMVTIYNKSDLIVGE 324

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKK-----LPFSIPSHKRHLYHLSQTVRYL 390
            +   +     + E   + I +++  L  + K        +      + L  L Q +  +
Sbjct: 325 FQPNAYPSLVISAENSTD-IERLREFLGVQMKAEMDYYEEWVEVYEAQKLSQLQQNI-LV 382

Query: 391 EMASLNEK 398
           E+   NE+
Sbjct: 383 EILEFNEE 390


>gi|145593996|ref|YP_001158293.1| GTP-binding protein, HSR1-related [Salinispora tropica CNB-440]
 gi|145303333|gb|ABP53915.1| GTP-binding protein, HSR1-related [Salinispora tropica CNB-440]
          Length = 494

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 20/198 (10%)

Query: 205 SHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
             + Q K     RN    + I G++NAGKSSL N L    V +   +  T    +     
Sbjct: 239 RTVRQTKRARRYRNEVPAVAIAGYTNAGKSSLLNQLTGAGVLVENALFATLDPTIRKATT 298

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----- 318
            +G     SDT G          E  + T  EV  ADL++ + +          +     
Sbjct: 299 SDGRNFTFSDTVGFVRHLPHQIVEAFRSTLEEVAEADLVVHVVDGTHPDPEEQVRAVRAV 358

Query: 319 -------NIDFIFIGTKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSN 364
                   +  + +  K+D     T             +S+ +G G+++L   +++ L  
Sbjct: 359 LAEVGADRLPELLVVNKTDAAGEETLLRLKRLWPEAIFVSAHSGYGVDDLRRSVEARLPR 418

Query: 365 KFKKLPFSIPSHKRHLYH 382
              ++   +P  +  L  
Sbjct: 419 PAVEVRAVLPYDRGDLVA 436


>gi|304439861|ref|ZP_07399755.1| GTP-binding protein HflX [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371600|gb|EFM25212.1| GTP-binding protein HflX [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 420

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 31/214 (14%)

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK----------IVILGHSNAGKSSLFNAL--AKK 242
           D   L+ +I S   + K+ E  R              + ++G++NAGKS++ N +  +  
Sbjct: 166 DRRRLQREIDSIRDKLKVAEKNRETRSKRRMESRLPIVSLVGYTNAGKSTILNRIKNSNS 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
               V ++   T D  +    L  G    ISDT G          E  K T  E+  +DL
Sbjct: 226 REVFVKNMLFATLDPNSRKSKLLNGRDFIISDTVGFVSKLPTKLIEAFKSTLEEIRGSDL 285

Query: 302 ILLLKEINSKK-EISFPK-----------NIDFIFIGTKSD---LYSTYTEEYD---HLI 343
           I+ + + +S   EI +             ++  + +  K D   L      + D     I
Sbjct: 286 IVHVMDASSSDIEIQYKTTMNILKDIGVMDVPILTVYNKMDRAELEDIILPQVDGDYIFI 345

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           S+   E +++L+N I+  L+ K++++    P  K
Sbjct: 346 SAKHDENMDKLLNAIEKCLNIKYQEVSLLFPYSK 379


>gi|315127880|ref|YP_004069883.1| protease GTPase subunit [Pseudoalteromonas sp. SM9913]
 gi|315016394|gb|ADT69732.1| protease GTPase subunit [Pseudoalteromonas sp. SM9913]
          Length = 429

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 91/271 (33%), Gaps = 27/271 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRARIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I      +     QG+          + ++G++NAGKS+LFN +   DV    D    T
Sbjct: 173 NIRARLAKVGVQREQGRRARTRNEIPTVSLVGYTNAGKSTLFNRITNSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            D     LD+     V ++DT G             K T  E   ADL L + ++     
Sbjct: 232 LDPTLRKLDIGDVGSVILADTVGFIRHLPHDLVAAFKATLTETREADLQLHVIDVADPRR 291

Query: 312 -----------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                      KEI    ++  + +  K D     T   D           +S+ TGEG 
Sbjct: 292 KENIEQVQEVLKEIE-ADDVPQLLVYNKIDALDDVTPRIDRDDEGQPIRVWLSAKTGEGC 350

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           E L   I  +L+ K       +      L  
Sbjct: 351 ELLSEAISDLLAKKMLSETLILAPQYGRLRA 381


>gi|242373599|ref|ZP_04819173.1| GTP-binding protein [Staphylococcus epidermidis M23864:W1]
 gi|242348962|gb|EES40564.1| GTP-binding protein [Staphylococcus epidermidis M23864:W1]
          Length = 412

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 96/265 (36%), Gaps = 25/265 (9%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + +      + +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSREGKLHVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        ++I ++G++NAGKSS FN LA ++     ++   
Sbjct: 180 NEIKHQLQTVVEHRERYRNKREQNQVFQIALVGYTNAGKSSWFNVLANEE-TYEKNLLFA 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T  + + EG+ + ISDT G  +          K T  E + ADL+L + + +  +
Sbjct: 239 TLDPKTRQIQINEGFNLIISDTVGFIQKLPTTLVAAFKSTLEEAKGADLLLHVVDASHPE 298

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEE--- 353
                              I    I  K DL    TE    +  H+  S   E  +E   
Sbjct: 299 YRSQYDTVNQLINDLDMDQIPQAVIFNKKDLCGEDTEVPVSKSPHVFVSSRNENDKEKVK 358

Query: 354 --LINKIKSILSNKFKKLPFSIPSH 376
             +I++IK  L    + +       
Sbjct: 359 SLMIDEIKRNLEYYEETVDSVNADR 383


>gi|238917198|ref|YP_002930715.1| GTP-binding protein HflX [Eubacterium eligens ATCC 27750]
 gi|238872558|gb|ACR72268.1| GTP-binding protein HflX [Eubacterium eligens ATCC 27750]
          Length = 413

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 20/230 (8%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ ++ +     D+  H    +      +     I+G++NAGKS+L N L    V +  D
Sbjct: 171 RDRISKLSADLKDMKEHRDVQRSKRAKTSTSVAAIVGYTNAGKSTLLNKLTDAGV-LSED 229

Query: 250 IPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D  T  ++L  G  V ++DT G          E  K T  E + AD+I+ + ++
Sbjct: 230 KLFATLDPTTRSMELPNGEKVLLTDTVGFIRKLPHNLIEAFKSTLEEAKYADIIVHVVDV 289

Query: 309 NSKKEISFP------------KNIDFIFIGTKSDLYSTYT------EEYDHLISSFTGEG 350
           ++                   +    + +  K D+            +Y + IS+  G G
Sbjct: 290 SNPDYEQQMSTVYATLKQLGVEGKPVVTLFNKCDVLPEKPAAKDLHADYTYNISAVRGNG 349

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
           LE     ++ I+     ++       +     L +    LE     E   
Sbjct: 350 LEAFKECLQEIILKSRIRIERVFSYSEAGKIQLIRQFGQLESEEYTEDGI 399


>gi|229162638|ref|ZP_04290598.1| hypothetical protein bcere0009_34100 [Bacillus cereus R309803]
 gi|228620901|gb|EEK77767.1| hypothetical protein bcere0009_34100 [Bacillus cereus R309803]
          Length = 424

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 104/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +++ ++ ++     Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNVSSVLEAKVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKS 329
                   + T  E   AD+IL + +      I                +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEQTVKQLLSDLEINHIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F    L  +   I+  +  + ++    IP  +
Sbjct: 319 DELHQNFIPFPKNDFLMTSAFEESDLLHIKEAIEKKMKEEMRRYQAEIPPSE 370


>gi|254525288|ref|ZP_05137343.1| GTP-binding proten HflX [Stenotrophomonas sp. SKA14]
 gi|219722879|gb|EED41404.1| GTP-binding proten HflX [Stenotrophomonas sp. SKA14]
          Length = 436

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 89/288 (30%), Gaps = 29/288 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W          I        + +      ++ +  +      +   
Sbjct: 125 LAQLRHLATRLVRGWTHLERQRGGSIGLRGPGETQLETDRRLLQKRVEQLQKRLEKVEVQ 184

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +   +     ++ ++G++NAGKS+LFNA+   + A   D    T D     + + G
Sbjct: 185 RTQMRRARVRSELPRVALVGYTNAGKSTLFNAMTGAE-AYAADQLFATLDPTVRRIAVPG 243

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------- 318
             V ++DT G             + T  E   AD +L + +                   
Sbjct: 244 GNVVLADTVGFVRDLPHDLVAAFRSTLSEAREADFLLHVVDAADPHREERIAQVDEVLTA 303

Query: 319 ----NIDFIFIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSI 361
               ++  + +  K D        +D               IS+  G GL+ L   +   
Sbjct: 304 VGAGDLPQLLVFNKIDRIDGADVRHDGQDGIPDESRRERVWISARDGRGLDLLQAVLGKR 363

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           L  +       +P     L      +  +     +E+     ++  +L
Sbjct: 364 LGLQHVTGELRLPPDAGRLRARLHQLEVIRSEQADEEGW---LLQVDL 408


>gi|159184763|ref|NP_354458.2| GTP-binding protein HFLX [Agrobacterium tumefaciens str. C58]
 gi|159140051|gb|AAK87243.2| GTP-binding protein HFLX [Agrobacterium tumefaciens str. C58]
          Length = 444

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 31/222 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + I+ L+ ++   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 169 EADRRLLQDRIVKLEKELEQVVRTRQLHRAKRRKVPHPIVALVGYTNAGKSTLFNRITGA 228

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 229 GV-LAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISDLPTHLVAAFRATLEEVLEADL 287

Query: 302 ILLLKEINSKKEISFPKN----------------IDFIFIGTKSDLYSTYTEEYDHLI-- 343
           +L +++++     +   +                   I +  K D       +       
Sbjct: 288 VLHVRDMSDPDNAAQSADVLRILGDLGIDEKEAEKRIIEVWNKVDRLEPEAHDAIMQRAE 347

Query: 344 --------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                   S+ TGEG++ L+ +I   LS    +    +   +
Sbjct: 348 GRSDIRAVSAITGEGVDALMEEISKRLSGVLTETTVVLSVEQ 389


>gi|71064910|ref|YP_263637.1| GTP-binding protein Era [Psychrobacter arcticus 273-4]
 gi|71037895|gb|AAZ18203.1| probable GTP-binding protein Era [Psychrobacter arcticus 273-4]
          Length = 330

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 84/224 (37%), Gaps = 41/224 (18%)

Query: 218 NGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
            G+K   + I+G  N GKS+L N L  + ++I +  P TTR  +   L  +       DT
Sbjct: 26  EGFKTGYVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHRIHGILSNDEMQAVFVDT 85

Query: 275 AGI-RETDDIVEKEGIKRTFLEVENA--------------DLILLLKEINSKKEISFPKN 319
            GI R     + +   K     + +               D +L+L+++          N
Sbjct: 86  PGIHRNEVRAINERMNKAAVSALVDVDLVLFVVDSDQWRDDDLLVLQKLGDT-------N 138

Query: 320 IDFIFIGTKSD----------LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNK 365
           ++ + +  K+D          L  T+ + +D      +S+   + L+ L   I S L   
Sbjct: 139 LNVVLVINKADTLKDKGSVLPLMETFNDSFDFADIVPVSALKNQNLDRLQEVIASHLPVA 198

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
                    + +   +  S+ +R   M S  + +   D+ +  +
Sbjct: 199 APIYDTEQITDRSERFLASEIIREKIMRSAGD-EVPYDLTVQID 241


>gi|187477631|ref|YP_785655.1| GTP-binding protein Era [Bordetella avium 197N]
 gi|123514187|sp|Q2KWX8|ERA_BORA1 RecName: Full=GTPase Era
 gi|115422217|emb|CAJ48741.1| GTP-binding protein [Bordetella avium 197N]
          Length = 296

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 72/197 (36%), Gaps = 22/197 (11%)

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
            +  R G+ + I+G  N GKS+L NAL    ++IV+    TTR  +   L  E       
Sbjct: 3   SQAFRTGF-VAIVGRPNVGKSTLTNALIGSKISIVSRKAQTTRHRIHGVLTREHEQFVFV 61

Query: 273 DTAGIRETDDIVEKEGIKRTF-LEVENADLILLLKEI------NSKKEISFPKNIDFIFI 325
           DT G +          + R     + + D+++ + E       ++K     PK    I  
Sbjct: 62  DTPGFQTRHGGAMNRMMNRVVTQALADVDVVVHVVEAGKWSEGDAKLLPLLPKAERTILA 121

Query: 326 GTKSDLYSTYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
            +K D   +  E +                 +S+     L++L+ +I   L         
Sbjct: 122 ISKIDALKSRDELFPFVAKIMAQHAYGAVVPVSATKNHQLDQLLEEIAQRLPEGEPMFEE 181

Query: 372 SIPSHKRHLYHLSQTVR 388
              + +   +  ++ VR
Sbjct: 182 DTLTDRSMRFIAAELVR 198


>gi|159044115|ref|YP_001532909.1| GTP-binding protein [Dinoroseobacter shibae DFL 12]
 gi|157911875|gb|ABV93308.1| GTP-binding protein [Dinoroseobacter shibae DFL 12]
          Length = 415

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 28/224 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   +  +K  ++  +   +L    R       + ++G++NAGKS+LFN L   
Sbjct: 155 EADRRAIDEAVTRIKRQLAKVVKTRELHRAARKKVPYPIVALVGYTNAGKSTLFNHLTGA 214

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V +  D+   T D     L L +G  V +SDT G   +         + T  EV +ADL
Sbjct: 215 EV-LAKDMLFATLDPTMRALKLPDGLEVILSDTVGFISSLPTELVAAFRATLEEVLDADL 273

Query: 302 ILLLKEINSKKEISFPKN-------------IDFIFIGTKSDLY----------STYTEE 338
           IL +++I      +  ++                I +  K DL           S   ++
Sbjct: 274 ILHVRDIAHPDSAAQAEDVHKILEALGVKDERPMIEVWNKLDLLPEAEAEALRTSAARQD 333

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
               IS+ +GEG + L   I + L+         +P  +  +  
Sbjct: 334 DVLAISALSGEGFDTLQAAISARLTPALLDEVVVVPFAQGRVRA 377


>gi|237712754|ref|ZP_04543235.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406799|ref|ZP_06083348.1| GTP-binding protein HflX [Bacteroides sp. 2_1_22]
 gi|294646410|ref|ZP_06724054.1| GTP-binding protein HflX [Bacteroides ovatus SD CC 2a]
 gi|294806576|ref|ZP_06765414.1| GTP-binding protein HflX [Bacteroides xylanisolvens SD CC 1b]
 gi|298484334|ref|ZP_07002496.1| GTP-binding protein HflX [Bacteroides sp. D22]
 gi|229447205|gb|EEO52996.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355502|gb|EEZ04593.1| GTP-binding protein HflX [Bacteroides sp. 2_1_22]
 gi|292638248|gb|EFF56622.1| GTP-binding protein HflX [Bacteroides ovatus SD CC 2a]
 gi|294446220|gb|EFG14849.1| GTP-binding protein HflX [Bacteroides xylanisolvens SD CC 1b]
 gi|295084680|emb|CBK66203.1| GTP-binding protein HflX [Bacteroides xylanisolvens XB1A]
 gi|298269524|gb|EFI11123.1| GTP-binding protein HflX [Bacteroides sp. D22]
          Length = 419

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 19/207 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +LN +  LK  + + I + K  +    G   ++ ++G++N GKS++ N L+K +
Sbjct: 181 EMDRRIILNRMSLLKERL-AEIDKQKATQRKNRGRMIRVALVGYTNVGKSTMMNLLSKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     +SDT G          E  K T  EV  ADL++
Sbjct: 240 V-FAENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTDLVESFKSTLDEVREADLLV 298

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            + +I+    +++I                 I +  K D Y TY E+    ++  T E L
Sbjct: 299 HVVDISHPGFEEQIEVVNKTLAEIGGSGKPMILVFNKIDAY-TYVEKAPDDLTPRTKENL 357

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKR 378
              + ++      K +     I + +R
Sbjct: 358 T--LEELMKTWMAKMEDNCLFISARER 382


>gi|298207488|ref|YP_003715667.1| GTP-binding protein HflX [Croceibacter atlanticus HTCC2559]
 gi|83850124|gb|EAP87992.1| GTP-binding protein HflX [Croceibacter atlanticus HTCC2559]
          Length = 407

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 23/217 (10%)

Query: 188 SSKEVLNDILFLKNDISSHISQ-----GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
             + V + I  LKN I     Q     G  G+++R    + ++G++N GKS+L NA++K 
Sbjct: 167 DRRIVRDKISLLKNKIKKIDKQMEVQRGNRGQLVR----VALVGYTNVGKSTLMNAISKS 222

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V    +    T D     + +      ++DT G          E  K T  EV  ADL+
Sbjct: 223 EV-FAENKLFATLDTTVRKVVIRNLPFLLTDTVGFIRKLPTQLVESFKSTLDEVREADLL 281

Query: 303 LLLKEI------------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
           L + +I            N   +     +   I +  K D Y   T + D L +  T   
Sbjct: 282 LHVVDISHHNFEEHIASVNQILDEIDSADKPSIMVFNKIDAYEPETIDEDDLDTEKT-TK 340

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
              L +  K+ ++       F    +K +   L +TV
Sbjct: 341 HNTLEDWKKTWMNRTEYGSLFISALNKDNFDELRKTV 377


>gi|291519907|emb|CBK75128.1| GTP-binding protein HflX [Butyrivibrio fibrisolvens 16/4]
          Length = 410

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 43/251 (17%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGK--LGEIIRNGYKIV-ILGHSNAGKSSLFNALAKK 242
               + +   I  LK +++  +S  +    +  RNG  +  I+G++NAGKSSL N L   
Sbjct: 169 EMDKRLIAGRISQLKKELADVVSHREITRAKRQRNGVPVAAIVGYTNAGKSSLLNKLTDA 228

Query: 243 DV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            +    A+   +  TTR++    L      + ++DT G          +  K T  E + 
Sbjct: 229 HILEWDALFATLDPTTREL----LLDNDQKILLTDTVGFIRKLPHHLVDAFKSTLEEAKY 284

Query: 299 ADLILLLKEINSKK-----EISFP-------KNIDFIFIGTKSDLYS------TYTEEYD 340
           AD I+ + ++++ +     EI +         +   + I  K D  +          +Y 
Sbjct: 285 ADYIIHVVDVSNPQMDRQMEIVYQTLDKLGVSDKPILTIFNKVDKVADEHDYHDLRADYT 344

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
              S  TG+GL+ +   +  +L +  + +   IP                E  ++ +   
Sbjct: 345 VHTSIKTGKGLDRVREILAELLRDGKEYVEKLIPYT--------------EAGTIAKIRE 390

Query: 401 GLDIIAENLRL 411
             ++I+E  R 
Sbjct: 391 NGELISEEYRE 401


>gi|218696652|ref|YP_002404319.1| conserved hypothetical protein with GTPase domain [Escherichia coli
           55989]
 gi|218353384|emb|CAU99418.1| conserved hypothetical protein with GTPase domain [Escherichia coli
           55989]
          Length = 303

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 30/273 (10%)

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+    +    + E +   L  L   +S HI +  L ++  +   I I+G S AGKSSL 
Sbjct: 8   FTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLC 66

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLE 295
           NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ D   E E + R    
Sbjct: 67  NALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDI-- 124

Query: 296 VENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           +   DL+L L + + +         + I    +   +F+ T++D  +    E+D      
Sbjct: 125 LPELDLVLWLIKADDRALSVDEYFWRHILQCGHQQVLFVVTQAD-KTEPCHEWDMAGIQP 183

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402
           +    + +  K    +   F+ +   +    R  + L   V  L  A  +     L    
Sbjct: 184 SPAQEQNIREK-TEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRL 242

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
             ++  E++R  +    + TG V      D IF
Sbjct: 243 QDELRTESVRSQARE--QFTGAV------DRIF 267


>gi|158313950|ref|YP_001506458.1| GTP-binding protein Era [Frankia sp. EAN1pec]
 gi|158109355|gb|ABW11552.1| GTP-binding protein Era [Frankia sp. EAN1pec]
          Length = 310

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 1/105 (0%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           I         R+G+   ++G  NAGKS+L NAL    VAI +  P TTR  +   ++   
Sbjct: 3   IELADPATDFRSGF-ACLVGRPNAGKSTLTNALVGTKVAITSGRPQTTRHAIRGIINRPD 61

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
             + + DT G+     ++ +         +   D+I      +  
Sbjct: 62  AQLILVDTPGLHRPRTLLGQRLNDVVRTTLSEVDVIGFCMPADEP 106


>gi|53803934|ref|YP_114414.1| GTP-binding protein [Methylococcus capsulatus str. Bath]
 gi|53757695|gb|AAU91986.1| GTP-binding protein [Methylococcus capsulatus str. Bath]
          Length = 433

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 85/257 (33%), Gaps = 23/257 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W   L   +  I        + +         +  I      +   
Sbjct: 125 LAQLKHLSTRLVRGWTH-LERQKGGIGLRGPGETQLETDKRLLANRIRQIQKRLQQVEVQ 183

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
             QG+          + ++G++NAGKS+LFNAL + DV    D    T D     L   G
Sbjct: 184 RDQGRQARRRAQVPVVGLVGYTNAGKSTLFNALTRADV-YAADQLFATLDPTLRRLSAGG 242

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF---------- 316
             + ++DT G             + T  E   ADL+L + +   ++              
Sbjct: 243 LDMVLADTVGFIRHLPHELVAAFRSTLQESAEADLLLHVVDATDERMDETIAEVRQVLAE 302

Query: 317 --PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNK 365
                I  + +  K D         +           IS+ +G GL+ L   ++ +L   
Sbjct: 303 IGADRIPCVEVYNKVDGLDGVVPHVERNASGRPARVWISARSGAGLDLLKGLLEEVLGGG 362

Query: 366 FKKLPFSIPSHKRHLYH 382
            ++   ++ + +  L  
Sbjct: 363 VERRILTLTAGQGQLRA 379


>gi|332654437|ref|ZP_08420180.1| ferrous iron transport protein B [Ruminococcaceae bacterium D16]
 gi|332516401|gb|EGJ46007.1| ferrous iron transport protein B [Ruminococcaceae bacterium D16]
          Length = 810

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 77/248 (31%), Gaps = 26/248 (10%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI-------SQGKL 212
                   +R    A +       +          D   ++  +  H+            
Sbjct: 70  SLRGYELSLRKDDAAQIQMGAPRRMTPPKPSNRSQDPEAIRRQLRDHVHELEHHGRDYDH 129

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272
                   K+ + G+ N GK++LFNAL   +   V + PG T +       L    + + 
Sbjct: 130 NAHDNRPMKVALAGNPNCGKTTLFNALTGSNQ-YVGNWPGVTVEKKEGIAHLGDRELTVV 188

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIG 326
           D  GI        +E + R F+  E  D I+ + +  + +                +   
Sbjct: 189 DLPGIYSLSPYSMEEIVARDFIIGEGPDAIIDIVDATNLERNLYLTVQLLELERPMVLAL 248

Query: 327 TKSDLYSTYTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              D    + ++ D              I++ TGEGL+EL+      +   +   P  + 
Sbjct: 249 NFMDEVHAHGDKIDIERLSRELGVPVVPITARTGEGLDELLEVAHRQMHLGYTFEPDDLY 308

Query: 375 SHKRHLYH 382
               H  H
Sbjct: 309 DEFTHDIH 316


>gi|332344899|gb|AEE58233.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 290

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + ++  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEITPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRNI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + + +K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIRDK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELCTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|238924771|ref|YP_002938287.1| small GTP-binding protein domain protein [Eubacterium rectale ATCC
           33656]
 gi|238876446|gb|ACR76153.1| small GTP-binding protein domain protein [Eubacterium rectale ATCC
           33656]
 gi|291527180|emb|CBK92766.1| GTP-binding protein HflX [Eubacterium rectale M104/1]
          Length = 415

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 108/293 (36%), Gaps = 29/293 (9%)

Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI 196
           SE ++Q  L+         S        ++ +   I       ++ +V      + +  +
Sbjct: 122 SEGKIQVELAQLKYR---LSRLSGLGKSMSRLGGGIGTRGPGEKKLEVDRRLINDRIAQL 178

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
                ++  H    +          + I+G++NAGKS+L N L + DV +  D    T D
Sbjct: 179 RRELKEVQKHRDITRAKREKNKVPVVAIVGYTNAGKSTLLNHLTEADV-LEEDKLFATLD 237

Query: 257 VLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             T  L L+G   V ++DT G          E  K T  E + AD+I  + + ++ +   
Sbjct: 238 PTTRILALDGKQQVLLTDTVGFIRKLPHHLIEAFKSTLEEAKYADIIFHVVDASNMQREK 297

Query: 316 FP------------KNIDFIFIGTKSDLYS------TYTEEYDHLISSFTGEGLEELINK 357
                         K+  F+ +  K D  +       +  +Y   IS+    GL+E+ + 
Sbjct: 298 QMFITYQTLDDLGVKDKKFVTLFNKQDARTDNEPLHDFRADYTLNISAAKDLGLDEVKSL 357

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQ------TVRYLEMASLNEKDCGLDI 404
           ++ IL      +   IP  K  +  L +      +  Y+      +    +++
Sbjct: 358 LEEILRENKVYIERIIPYDKAGVIQLIRKQGELVSEEYVADGIQIKAYVPMEV 410


>gi|307132703|ref|YP_003884719.1| putative GTPase [Dickeya dadantii 3937]
 gi|306530232|gb|ADN00163.1| predicted GTPase [Dickeya dadantii 3937]
          Length = 426

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 98/280 (35%), Gaps = 30/280 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+          + ++G++NAGKS+LFN +   DV     +  T 
Sbjct: 173 QILSRLEKVEKQREQGRRARTRAEVPTVSLVGYTNAGKSTLFNRMTSADVYAADQLFATL 232

Query: 255 RDVL-TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
              L  I +D  G  V ++DT G             K T  E   A L+L + + +  + 
Sbjct: 233 DPTLRRISVDDVGDTV-LADTVGFIRELPHDLVAAFKATLQETREATLLLHVVDASDARV 291

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                       EI    +I F+ +  K D         D           +S+ TGEG+
Sbjct: 292 DENIDAVNEVLAEIE-ADDIPFMLVMNKIDRQENVEPRIDRDEENRPIRVWLSAQTGEGI 350

Query: 352 EELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
             L+  +   LS +       +P      R  ++  Q + 
Sbjct: 351 PLLLQALTERLSGEIAHYSLHLPPQAGRLRSRFYQLQAIE 390


>gi|57545656|gb|AAW51747.1| Aec64 [Escherichia coli]
 gi|291291738|gb|ADD91709.1| YeeP [Escherichia coli]
          Length = 303

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 33  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 91

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 92  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 149

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 150 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 207

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 208 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 263

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 264 ----DRIF 267


>gi|254486973|ref|ZP_05100178.1| GTP-binding proten HflX [Roseobacter sp. GAI101]
 gi|214043842|gb|EEB84480.1| GTP-binding proten HflX [Roseobacter sp. GAI101]
          Length = 412

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 93/265 (35%), Gaps = 23/265 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ M  ++ + + L   W                   + +    +  E L  
Sbjct: 108 AATREGVLQVEMAALNYQRTRLVRAWTHLERQRGGLGFVGGPGETQIESDRRAIDEQLVR 167

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +    + +    +  +          + ++G++NAGKS+LFN L   DV     +  T  
Sbjct: 168 LRRQLDKVVKTRALHRAARAKVPYPIVALVGYTNAGKSTLFNRLTGADVMAKDMLFATLD 227

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--- 312
             +   +  +G  + +SDT G             + T  EV  AD+I  +++I+  +   
Sbjct: 228 PTMRSLVLPDGPEIILSDTVGFISDLPTELVAAFRATLEEVLAADIICHVRDISHAETEE 287

Query: 313 ----------EISFPKNIDFIFIGTKSDLYS----------TYTEEYDHLISSFTGEGLE 352
                      +  PK      +  K DL +             +     IS+ TGEGLE
Sbjct: 288 QAQNVRDILASLGVPKETRSFEVWNKLDLLAPDRADAVRARAERDPNVLAISAITGEGLE 347

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK 377
           ++ + I   L    ++    +   +
Sbjct: 348 QMQSVIAEALQGVVREADLVLGYDQ 372


>gi|319440588|ref|ZP_07989744.1| GTPase Era [Corynebacterium variabile DSM 44702]
          Length = 325

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 24/215 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +      V + DT G
Sbjct: 32  RSGF-VSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGIVHRRDSQVIVVDTPG 90

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIG 326
           +     ++ +   +       + D+I L    + K             +       I I 
Sbjct: 91  LHRPRTLLGERLNEVVKETYADVDVIGLCIPADEKIGPGDRWILDAVRASAPKTPVIGIV 150

Query: 327 TKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           TK D             L+          +S+     L+ L++ I   L    K  P   
Sbjct: 151 TKLDKTSKDQVGAQLMELHDLLDGGEVIPVSAKEQVQLDVLLDVITEQLPEGPKFYPDDH 210

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            +       +S+ +R   ++ L+++      +  +
Sbjct: 211 ITDDDRDTRMSELIREAALSGLHDELPHSVAVQID 245


>gi|213511324|ref|NP_001133545.1| GTPase Era, mitochondrial [Salmo salar]
 gi|322518583|sp|B5X2B8|ERAL1_SALSA RecName: Full=GTPase Era, mitochondrial; AltName: Full=ERA-like
           protein 1; Flags: Precursor
 gi|209154434|gb|ACI33449.1| GTP-binding protein era homolog [Salmo salar]
 gi|223649262|gb|ACN11389.1| GTP-binding protein era homolog [Salmo salar]
          Length = 457

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 72/170 (42%), Gaps = 19/170 (11%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
           E +D        VL D     + +     Q +  +++R    + I+G  NAGKS+L N L
Sbjct: 73  ETDDTHYHHPASVLPDSAEQLSLLVKDPDQPENSKVLR----VAIIGAPNAGKSTLSNQL 128

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI----RETDDIVEKEGIKRTFLE 295
             + V  V+    TTR      L  +   + + DT G+    +     +EK  ++  +  
Sbjct: 129 LGRKVFAVSKKVHTTRARALGVLTEDDTQIILLDTPGLTTPTKVKRHQLEKSLLEDPWNT 188

Query: 296 VENADLILLLKEINSK-----------KEISFPKNIDFIFIGTKSDLYST 334
           V+ A L++++ +++ K           K ++   ++  + +  K DL  +
Sbjct: 189 VKEAGLVVVMVDVSDKWACNKLDFEVLKCLTQHPDVPAVLVLNKVDLLKS 238


>gi|237718237|ref|ZP_04548718.1| GTP-binding protein [Bacteroides sp. 2_2_4]
 gi|299147788|ref|ZP_07040851.1| GTP-binding protein HflX [Bacteroides sp. 3_1_23]
 gi|229452421|gb|EEO58212.1| GTP-binding protein [Bacteroides sp. 2_2_4]
 gi|298513971|gb|EFI37857.1| GTP-binding protein HflX [Bacteroides sp. 3_1_23]
          Length = 420

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 19/207 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +LN +  LK  + + I + K  +    G   ++ ++G++N GKS++ N L+K +
Sbjct: 181 EMDRRIILNRMSLLKERL-AEIDKQKATQRKNRGRMIRVALVGYTNVGKSTMMNLLSKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     +SDT G          E  K T  EV  ADL++
Sbjct: 240 V-FAENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTDLVESFKSTLDEVREADLLV 298

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            + +I+    +++I                 I +  K D Y TY E+    ++  T E L
Sbjct: 299 HVVDISHPGFEEQIEVVNKTLAEIGGSGKPMILVFNKIDAY-TYVEKAPDDLTPRTKENL 357

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKR 378
              + ++      K +     I + +R
Sbjct: 358 T--LEELMKTWMAKMEDNCLFISARER 382


>gi|227534995|ref|ZP_03965044.1| GTP-binding protein era family protein [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227187386|gb|EEI67453.1| GTP-binding protein era family protein [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 278

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 21/174 (12%)

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N +  + +AI++    TTR+ +          +   DT GI +  + ++    K     
Sbjct: 1   MNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVDTPGIHKPKNELDTYMDKAALST 60

Query: 296 VENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS-------------T 334
           +   D IL + E + +K                    I  K DL                
Sbjct: 61  LNQVDAILFMVEADEEKGPGDGYIMRQLAEVKKPVYLIINKIDLVKPDDLLPLIESYQHD 120

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
           Y       IS+  G  ++EL+  +   L    +  P    +     + + + +R
Sbjct: 121 YAFAQVFPISATMGNNVDELLTALTDALPVGPQYYPEDQLTDHPEYFVVGELIR 174


>gi|193069461|ref|ZP_03050415.1| putative GTPase [Escherichia coli E110019]
 gi|260854503|ref|YP_003228394.1| hypothetical protein ECO26_1352 [Escherichia coli O26:H11 str.
           11368]
 gi|192957209|gb|EDV87658.1| putative GTPase [Escherichia coli E110019]
 gi|257753152|dbj|BAI24654.1| hypothetical protein ECO26_1352 [Escherichia coli O26:H11 str.
           11368]
 gi|323156819|gb|EFZ42953.1| hypothetical protein ECEPECA14_1269 [Escherichia coli EPECa14]
          Length = 290

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQEQNIREK-TDAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELCTESVRGQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|255654837|ref|ZP_05400246.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-23m63]
 gi|296449580|ref|ZP_06891357.1| GTP-binding protein HflX [Clostridium difficile NAP08]
 gi|296878097|ref|ZP_06902112.1| GTP-binding protein HflX [Clostridium difficile NAP07]
 gi|296261644|gb|EFH08462.1| GTP-binding protein HflX [Clostridium difficile NAP08]
 gi|296430850|gb|EFH16682.1| GTP-binding protein HflX [Clostridium difficile NAP07]
          Length = 427

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 29/247 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAK- 241
               + +LN    ++ ++       +   + R   N   + ++G++NAGKS+L N L K 
Sbjct: 165 EIDKRHILNKAADIRRELKEVKKNRETQRVKRLKSNIPIVALVGYTNAGKSTLLNELIKT 224

Query: 242 ------KDVAIVTDIPGTTRDV-LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
                 +    V D+   T DV L   L        + DT G          E  K T  
Sbjct: 225 HKDYEQEKEVFVKDMLFATLDVTLRKALLPNKKEFLVVDTVGFVSKLPHDLVEAFKATLE 284

Query: 295 EVENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYS----TYTE 337
           EV+ ADLIL + +  +              KE+    +   I +  K D         ++
Sbjct: 285 EVQYADLILHVIDATNTSYELQKSTTEGVLKELGV-NDKKHILVYNKVDKLELDIYPKSQ 343

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
           E    IS+  G  +++L+N I+  L      +   +P  +  ++   +    +E     E
Sbjct: 344 EDIVYISAKQGINMDKLLNMIEIALMENTYSVSLMLPYERGDIFSRIKDKYNVENFEYGE 403

Query: 398 KDCGLDI 404
               LD+
Sbjct: 404 NGITLDV 410


>gi|330720972|gb|EGG99139.1| GTP-binding protein HflX [gamma proteobacterium IMCC2047]
          Length = 426

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 92/271 (33%), Gaps = 27/271 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  LN
Sbjct: 115 RARTYEGKLQVELAQLEHVSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRLN 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+            + G++NAGKS+LFN L    V    D    T
Sbjct: 174 TITRKLEKVRKQRDQGRQARKRAEIPTASLAGYTNAGKSTLFNRLTDASV-YAQDQLFAT 232

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            D     L++EG   V ++DT G          E  + T  E   A L+L + +   +  
Sbjct: 233 LDPTMRRLEVEGVGSVVLADTVGFIRHLPHKLVEAFRATLQEAAEASLLLHVIDAADENR 292

Query: 312 -----------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                      +EI     +  + +  K DL        D           +S+ TG G+
Sbjct: 293 DGNIEQVNDVLREIK-ADEVPSLLVYNKIDLIEDKLPRLDRDDQGVPRRVWVSAETGAGI 351

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           + L+  I   L+ +       +P+    L  
Sbjct: 352 DLLLQAIGERLAGEMVNEELCLPASDGRLRA 382


>gi|300816620|ref|ZP_07096841.1| small GTP-binding protein [Escherichia coli MS 107-1]
 gi|300530850|gb|EFK51912.1| small GTP-binding protein [Escherichia coli MS 107-1]
          Length = 290

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R  L     DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDILS--ELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|197287178|ref|YP_002153050.1| GTPase HflX [Proteus mirabilis HI4320]
 gi|227357127|ref|ZP_03841496.1| GTP-binding protein HflX [Proteus mirabilis ATCC 29906]
 gi|194684665|emb|CAR46603.1| GTP-binding protein [Proteus mirabilis HI4320]
 gi|227162659|gb|EEI47626.1| GTP-binding protein HflX [Proteus mirabilis ATCC 29906]
          Length = 427

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 99/280 (35%), Gaps = 29/280 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 114 RARTHEGKLQVELAQLRHLSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGKIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+      +   + ++G++NAGKSSLFN +   DV    D    T
Sbjct: 173 QILMRLGKVERQREQGRQARSKADIPTLSLVGYTNAGKSSLFNRITCADV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     + ++    V ++DT G             K T  E   A L+L + +    + 
Sbjct: 232 LDPTLRRIQVDDVGTVVLADTVGFIRHLPHDLVAAFKATLQETREATLLLHVIDAADSRF 291

Query: 313 -----------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                      E      I  +++  K DL   +T   D           +S+ TGEG+ 
Sbjct: 292 EENIHAVENVLEEIDAHEIPTLYVMNKIDLLEDFTPRIDRNEDNLPVRVWVSAQTGEGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK----RHLYHLSQTVR 388
            L   +   LS +   +   +P  +    R  ++  Q + 
Sbjct: 352 LLYQALTERLSGEIAHVELRLPPEEAGRLRSRFYQLQAIE 391


>gi|85708673|ref|ZP_01039739.1| GTPase [Erythrobacter sp. NAP1]
 gi|85690207|gb|EAQ30210.1| GTPase [Erythrobacter sp. NAP1]
          Length = 432

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 111/301 (36%), Gaps = 37/301 (12%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E + ++ +  +  + S L   W   L   R          E +       + +   
Sbjct: 118 AATAEGRLQVELAHLDYQQSRLVRSWTH-LERQRGGFGFLGGPGETQI--EADRRMIRQR 174

Query: 196 ILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  L+ ++        L    R       I ++G++NAGKS+LFN L   +V    D+  
Sbjct: 175 MGRLRRELEQVRKTRTLHRERRGRAPWPVIALVGYTNAGKSTLFNRLTGAEVM-AEDLLF 233

Query: 253 TTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D     + L G     +SDT G             + T  EV  AD+I  ++++ + 
Sbjct: 234 ATLDPTMRAISLPGVEKAILSDTVGFISDLPTQLVAAFRATLEEVTGADIICHVRDMANP 293

Query: 312 KEISFPKN-------------------IDFIFIGTKSDLYS---------TYTEEYDHLI 343
              +  K                    I  + +  K+DL S             +   L+
Sbjct: 294 AHSAQKKQVMEVLSDLGVVDAESGESEIPILEVWNKADLLSEDTLTELREAAAGQDAVLL 353

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLEMASLNEKDCGL 402
           S+ +GEG+E   +KI  +L+   K++  ++P+   R L  L      LE     E + G 
Sbjct: 354 SASSGEGVEAFADKIADMLTASAKEVTITLPASDGRRLAWLHAHGDVLEDCDAGEGEHGP 413

Query: 403 D 403
           +
Sbjct: 414 E 414


>gi|320529427|ref|ZP_08030515.1| GTP-binding protein Era [Selenomonas artemidis F0399]
 gi|320138393|gb|EFW30287.1| GTP-binding protein Era [Selenomonas artemidis F0399]
          Length = 298

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 23/210 (10%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G  NAGKS+L NAL  + +AI++D P TTR  +   L  E   V   DT G+ +   
Sbjct: 10  AVIGRPNAGKSTLINALIGQKIAIMSDKPQTTRSRILCILTQEDAQVIFLDTPGVHKPKH 69

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIG--TKSDL--- 331
            +     K T   +   D+++ + +   K        +   + +    +    K DL   
Sbjct: 70  KLGSHMAKATEGALHGVDVVVFVVDATEKMGAGEQYILKQLEKVRVPVLLAVNKIDLLRR 129

Query: 332 ------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                  ++Y + YD      IS+   E L  L+++IK  L    +  P  + + +    
Sbjct: 130 EETLPIIASYAKTYDFAGIVPISARAEENLAGLLDEIKKHLPEGPRYYPEDMVTDQPERL 189

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            +++ VR  E A    +D     +A ++  
Sbjct: 190 IIAELVR--EKALELTRDEIPHAVAVDIEE 217


>gi|213155395|ref|YP_002317440.1| probable tRNA modification GTPase TrmE [Acinetobacter baumannii
          AB0057]
 gi|213054555|gb|ACJ39457.1| probable tRNA modification GTPase TrmE [Acinetobacter baumannii
          AB0057]
          Length = 40

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 3  HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK 40
          H + TI A++T      + +IRLSGP  + + + + +K
Sbjct: 2  HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQK 39


>gi|148381522|ref|YP_001256063.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931685|ref|YP_001385896.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153934957|ref|YP_001389303.1| GTP-binding protein [Clostridium botulinum A str. Hall]
 gi|148291006|emb|CAL85143.1| putative ATP/GTP-binding protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927729|gb|ABS33229.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152930871|gb|ABS36370.1| GTP-binding protein [Clostridium botulinum A str. Hall]
          Length = 399

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 19/173 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           N   I  +G +N+GKSSL NA+  +D++IV+ I GTT D ++  ++L     V  +DTAG
Sbjct: 8   NRIHITFIGKTNSGKSSLMNAIIGQDISIVSPIEGTTTDPVSKSMELIPLGPVLFTDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           + +  ++  K  I++T   +   D  + +          + K        NI +I +  K
Sbjct: 68  LEDNTELG-KVRIEKTLNTLLKTDFAIYVMSAKDIDINLYKKTINKFKEQNISYITVINK 126

Query: 329 SDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            D              E    +S+     +  L N I   LS    K   +I 
Sbjct: 127 MDTIEKNKIDDLKKIIESPIFLSANNINSILNLKNLIIENLSK--SKEDDTII 177


>gi|110643162|ref|YP_670892.1| hypothetical protein ECP_3008 [Escherichia coli 536]
 gi|191171808|ref|ZP_03033354.1| putative GTPase [Escherichia coli F11]
 gi|110344754|gb|ABG70991.1| hypothetical protein ECP_3008 [Escherichia coli 536]
 gi|190907843|gb|EDV67436.1| putative GTPase [Escherichia coli F11]
          Length = 290

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHNMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDVAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|218707941|ref|YP_002415460.1| hypothetical protein ECUMN_4880 [Escherichia coli UMN026]
 gi|331650750|ref|ZP_08351778.1| conserved hypothetical protein [Escherichia coli M718]
 gi|218435038|emb|CAR15991.1| conserved hypothetical protein with GTPase domain [Escherichia coli
           UMN026]
 gi|331051204|gb|EGI23253.1| conserved hypothetical protein [Escherichia coli M718]
          Length = 303

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 30/273 (10%)

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+    +    + E +   L  L   +S HI +  L ++  +   I I+G S AGKSSL 
Sbjct: 8   FTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLC 66

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLE 295
           NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ D   E E + R    
Sbjct: 67  NALFQGEVTPVSDVHAGTREVRRFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDI-- 124

Query: 296 VENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           +   DL+L L + + +         + I    +   +F+ T++D  +    E+D      
Sbjct: 125 LPELDLVLWLIKADDRALSVDEYFWRHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQP 183

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402
           +    + +  K    +   F+ +   +    R  + L   V  L  A  +     L    
Sbjct: 184 SPAQAQNIREK-TEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRL 242

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
             ++  E++R  +    + TG V      D IF
Sbjct: 243 QDELRTESVRAQARE--QFTGAV------DRIF 267


>gi|57234501|ref|YP_181472.1| GTP-binding protein, putative [Dehalococcoides ethenogenes 195]
 gi|57224949|gb|AAW40006.1| GTP-binding protein, putative [Dehalococcoides ethenogenes 195]
          Length = 380

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 3/173 (1%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E Q ++ +  M   L  L GQW   L  +   I        + +      +  + ++   
Sbjct: 109 EGQLQVELAQMQYILPRLAGQWSH-LERLGGGIGTRGPGESQLETDKRIIRTKIRNLQEQ 167

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
            +D+++H    +    +R    + ++G++N+GKSSL NA+ K DV +  +    T D  T
Sbjct: 168 LDDVTTHRDLYRERRRMRGVPVVSLVGYTNSGKSSLLNAVVKADV-LAENKLFATLDPTT 226

Query: 260 IDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
             + + G   V ++DT G          +  + T  E+  ADL++ + +I +K
Sbjct: 227 RRMYINGLGNVLLTDTVGFIRKLPPAIVKAFRATLEEINQADLLVHVVDITAK 279


>gi|92117387|ref|YP_577116.1| GTP-binding protein, HSR1-related [Nitrobacter hamburgensis X14]
 gi|91800281|gb|ABE62656.1| GTP-binding protein HflX [Nitrobacter hamburgensis X14]
          Length = 444

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 100/270 (37%), Gaps = 35/270 (12%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E   ++ +  ++ + S L   W   L   R          E +       + + +
Sbjct: 126 RAKTKEGALQVELAHLNYQRSRLVRSWTH-LERQRGGFGFMGGPGETQI--EADRRLIGD 182

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I+ L+N++    +  +L    R       + ++G++NAGKS+LFN L + +V     + 
Sbjct: 183 RIVRLENELKKVQATRRLHRAGRQRVPYRVVALVGYTNAGKSTLFNRLTRAEVQAADMLF 242

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T    L       G    +SDT G             + T  EV  AD+IL +++I+ +
Sbjct: 243 ATLDPTLRALALPHGGKAMLSDTVGFISNLPTQLVAAFRATLEEVMEADVILHVRDISHE 302

Query: 312 K---------------EISFPKNIDFIFIGTKSDLYSTYTEE-------------YDHLI 343
                            I        + +  K D +     E                L+
Sbjct: 303 DAEAQQHDVEAVLRQLGIDPGHGARILEVWNKIDRFDADQRENLENIAVRRSAEVPCFLV 362

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           S+ TGEGL+ L+  I+  L+     L  S+
Sbjct: 363 SAETGEGLDTLLAAIEDRLAATRTTLDLSV 392


>gi|88798920|ref|ZP_01114502.1| GTPase [Reinekea sp. MED297]
 gi|88778400|gb|EAR09593.1| GTPase [Reinekea sp. MED297]
          Length = 436

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 106/298 (35%), Gaps = 27/298 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +  + + L   W   L   +  I        + +      +  ++
Sbjct: 115 RARTHEGKLQVELAQLQYQSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRARIS 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I    N +    +Q +      +   + ++G++NAGKS+LFN L    V     +  T 
Sbjct: 174 TIHKKLNKVEKQRNQSRRARDRSDTPTVSLVGYTNAGKSTLFNYLTDSGVYAADQLFATL 233

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
              L      +   + ++DT G          E  K T  E   ADL+L + +   +  +
Sbjct: 234 DPTLRRLAIPDMGDIVLADTVGFIRHLPHKLVEAFKATLQETAEADLLLHVVDCADEDRL 293

Query: 315 SFPK------------NIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLEE 353
              +            +I  + +  K DL   +    +           +S+ TG+G   
Sbjct: 294 GNIEQVENVLDEIGSSDIPRLEVFNKIDLLDDFEPAIERNDEGIPVRVWVSAKTGQGAAL 353

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           ++  +  +L ++      S+   +  L    +   Y + A L+E       +   +R+
Sbjct: 354 ILAALTELLGDEVISKSISLSPAESGL----RAALYEQNAVLSENYDEHGHVELEIRM 407


>gi|71275937|ref|ZP_00652220.1| Small GTP-binding protein domain [Xylella fastidiosa Dixon]
 gi|71900023|ref|ZP_00682168.1| Small GTP-binding protein domain [Xylella fastidiosa Ann-1]
 gi|71163314|gb|EAO13033.1| Small GTP-binding protein domain [Xylella fastidiosa Dixon]
 gi|71730233|gb|EAO32319.1| Small GTP-binding protein domain [Xylella fastidiosa Ann-1]
          Length = 450

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 100/306 (32%), Gaps = 29/306 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           +   E + ++ +  +    + L   W          I        + +      ++ +  
Sbjct: 115 ACSHEGKLQVELAQLRHLATRLVRGWTHLERQRGGAIGLRGPGETQLETDRRLLQKRVEQ 174

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +    + +    +Q +   +     +I ++G++N+GKS+LFNAL     A   D    T 
Sbjct: 175 LQKRLSKVEVQRTQMRRARVRSKVPRIALVGYTNSGKSTLFNALTGAS-AYTADQLFATL 233

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           D     + L G    ++DT G             + T  E   ADL+L + +        
Sbjct: 234 DPKVRRIVLPGSSAMLADTVGFVRHLPHELVAAFRSTLSEAREADLLLHVIDAADPLREE 293

Query: 316 FPKNIDFI------------FIGTKSDLYSTYTEEYD-------------HLISSFTGEG 350
               +D +             +  K D         D               +S+  G G
Sbjct: 294 RIDQVDEVLQAIGAGELPQLLVFNKIDCIEGAEVRQDAQDGIPDQARRERVWLSARHGHG 353

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DI-IAE 407
           +E L   +   L  +  +    +   +  L      ++ +     +E    L  D+ +AE
Sbjct: 354 VELLQQVLDHRLKMQNVQSELRLLPSEGRLRARLHELKGVREEQTDEHGWLLKIDLSLAE 413

Query: 408 NLRLAS 413
             RLA+
Sbjct: 414 IERLAA 419


>gi|193061960|ref|ZP_03043056.1| putative GTPase [Escherichia coli E22]
 gi|194426328|ref|ZP_03058883.1| putative GTPase [Escherichia coli B171]
 gi|19908362|gb|AAL99256.1| unknown [Escherichia coli]
 gi|192932180|gb|EDV84778.1| putative GTPase [Escherichia coli E22]
 gi|194415636|gb|EDX31903.1| putative GTPase [Escherichia coli B171]
 gi|195183165|dbj|BAG66710.1| putative small GTP-binding protein [Escherichia coli O111:H-]
 gi|323162623|gb|EFZ48469.1| hypothetical protein ECE128010_1182 [Escherichia coli E128010]
          Length = 290

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 105/248 (42%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           ++I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RQILQCGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQEQNIREK-TDAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|317401887|gb|EFV82494.1| GTP-binding protein [Achromobacter xylosoxidans C54]
          Length = 296

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 28/196 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  N GKS+L NAL    ++IV+    TTR  +   L  +       DT G
Sbjct: 7   RTGF-VAIVGRPNVGKSTLTNALIGSKISIVSRKAQTTRHRIHGVLTRDHEQFVFVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEV----------------ENADLILL-LKEINSKKEISFPKN 319
            +          + R   +                    D  LL L     +  ++  K 
Sbjct: 66  FQTRHGGAMNRMMNRVVTQALADVDVVVHVVEAGKWSEGDAKLLPLLPAPERTILAVSK- 124

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
                +  + +L++  ++             S+   + L++L+ +I + L          
Sbjct: 125 --IDALKNRDELFAFVSKIMALHPFGAVVPVSATKNQQLDQLLQEIAARLPEGEPMFEED 182

Query: 373 IPSHKRHLYHLSQTVR 388
             + +   +  ++ VR
Sbjct: 183 TLTDRPMRFIAAELVR 198


>gi|126656519|ref|ZP_01727780.1| iron(II) transporter [Cyanothece sp. CCY0110]
 gi|126622205|gb|EAZ92912.1| iron(II) transporter [Cyanothece sp. CCY0110]
          Length = 208

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 3/124 (2%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
            +   K       FL++ +     QGK  +I+  G  I ++G  N GKS LFN L     
Sbjct: 7   PDSCQKNPQASNKFLQSFLPKRF-QGKSSQIVSQG-TIALVGSPNVGKSLLFNVLTGA-Y 63

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
             V++ PGTT +V    + + G  + + DT G+     + E+E   R  L  E+ DL + 
Sbjct: 64  TTVSNYPGTTVEVSRNYITIAGKTITLIDTPGMYSLIPMTEEERFSRELLFTESLDLAIH 123

Query: 305 LKEI 308
           + + 
Sbjct: 124 VIDA 127


>gi|257790077|ref|YP_003180683.1| small GTP-binding protein [Eggerthella lenta DSM 2243]
 gi|257473974|gb|ACV54294.1| small GTP-binding protein [Eggerthella lenta DSM 2243]
          Length = 678

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG  N+GKS+LFNAL       V + PG T +         G    + D  G     
Sbjct: 10  VALLGQPNSGKSTLFNALTGS-RQRVGNWPGKTVEKKEGGFSRGGVDYAVCDLPGTYSLS 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTY 335
              E+E + R ++    AD++ +L + +  +   +        +   + +    D+    
Sbjct: 69  ANSEEEVVTRDYIASGRADVVCVLADASQLERSLYMLADFAGVDCACMLVLNLMDVAEAQ 128

Query: 336 TEEYD 340
            +  D
Sbjct: 129 GKRID 133


>gi|209885224|ref|YP_002289081.1| GTP-binding proten HflX [Oligotropha carboxidovorans OM5]
 gi|209873420|gb|ACI93216.1| GTP-binding proten HflX [Oligotropha carboxidovorans OM5]
          Length = 437

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 95/243 (39%), Gaps = 41/243 (16%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   I  ++ND+    +  +L    R       + ++G++NAGKS+LFN L + 
Sbjct: 167 EADRRMIGERITRIENDLKKVQATRRLHRAGRKRVPYRVVALVGYTNAGKSTLFNRLTRA 226

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV    D+   T D     L L  G    ISDT G       +     + T  EV  AD+
Sbjct: 227 DVQ-AADMLFATLDPTLRALRLPHGGKAMISDTVGFISDLPTMLVAAFRATLEEVIEADV 285

Query: 302 ILLLKEINSKKEISFPKNIDFIF---------------IGTKSDLYSTYTEE-------- 338
           IL +++I+ +   +  +++D +                +  K D +S    E        
Sbjct: 286 ILHVRDISHEDAEAQERDVDHVLRQLGIGTESGHRIIEVWNKIDCFSPEERENLARIAAR 345

Query: 339 --YDHLI---SSFTGEGLEELINKIKSILSNKFKKLP--------FSIPSHKRHLYHLSQ 385
              DH     S+ TGEG++ L+  I+  L+     L           I    R+   L +
Sbjct: 346 RPADHPCFLVSAETGEGIDALLAAIEERLAALRTVLELRIDAADGEGISWIHRNAEVLEK 405

Query: 386 TVR 388
           T+ 
Sbjct: 406 TLD 408


>gi|83942367|ref|ZP_00954828.1| GTP-binding protein HflX [Sulfitobacter sp. EE-36]
 gi|83846460|gb|EAP84336.1| GTP-binding protein HflX [Sulfitobacter sp. EE-36]
          Length = 412

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 92/263 (34%), Gaps = 23/263 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ M  ++ + + L   W                   + +    +  E L  
Sbjct: 108 AATREGVLQVEMAALNYQRTRLVRAWTHLERQRGGLGFVGGPGETQIESDRRAIDEQLVR 167

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +    + +    +  +          + ++G++NAGKS+LFN +   DV     +  T  
Sbjct: 168 LRRQLDKVVKTRALHRAARAKVPFPIVALVGYTNAGKSTLFNRMTGADVMAKDMLFATLD 227

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--- 312
             +   +  +G  + +SDT G             + T  EV  AD+I  +++I+  +   
Sbjct: 228 PTMRSLVLPDGPEIILSDTVGFISDLPTELVAAFRATLEEVLAADIICHVRDISHAETES 287

Query: 313 ----------EISFPKNIDFIFIGTKSD----------LYSTYTEEYDHLISSFTGEGLE 352
                      +  PK+     +  K D                ++    IS+ TGEGL+
Sbjct: 288 QARNVRDILTSLGVPKDTRSFEVWNKLDQLDDDRAAAVRARAQRDDSVLAISAITGEGLD 347

Query: 353 ELINKIKSILSNKFKKLPFSIPS 375
           EL   I   L    ++   ++  
Sbjct: 348 ELQAVIAEALQGAVREAELTLAF 370


>gi|87122644|ref|ZP_01078521.1| probable GTP-binding protein [Marinomonas sp. MED121]
 gi|86162102|gb|EAQ63390.1| probable GTP-binding protein [Marinomonas sp. MED121]
          Length = 444

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 66/398 (16%), Positives = 133/398 (33%), Gaps = 72/398 (18%)

Query: 11  VSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL--DKGLLIV 68
           ++T A  + ++++                ++KP P+    +        I+  ++  +++
Sbjct: 34  LATSAGIAPVAVV-------------TGSRQKPDPKYFIGKGKLDEVREIVEKEEAQVVL 80

Query: 69  FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEA 128
           F    S + E + E       A+   +L+    + ++       F++RA  +     L+ 
Sbjct: 81  FDHALSPSQERNLE------EALQCRVLDRTGLILDI-------FAQRARTHEGK--LQV 125

Query: 129 ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS 188
           E                 +  +    + L   W                   + +     
Sbjct: 126 E-----------------LAQLQHMATRLVRGWTHLERQKGGIGVRGGPGETQLESDRRQ 168

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
            +E +  I    + +SS   Q +          + ++G++NAGKS+LFN +   +V    
Sbjct: 169 LRERITSIQKRLDKVSSQRDQNRRSRDRSAVPTVSLVGYTNAGKSTLFNFITGAEV-FAA 227

Query: 249 DIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           D    T D     LDL     V ++DT G          +  + T  E   ADL+L + +
Sbjct: 228 DQLFATLDPTLRRLDLAQVGAVVLADTVGFIRQLPHKLIKAFQATLKESSEADLLLHVVD 287

Query: 308 INS-------------KKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISS 345
            +               KEI     I  + +  K D  +      D           IS+
Sbjct: 288 ASDINRDENVGHVNAVLKEID-ADEIPTLLVFNKIDDLADVEPRIDRNEDGMPYRVWISA 346

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
             G G++ L   I  +L+    +    +P+    L  +
Sbjct: 347 KQGTGIDLLRQAIAEVLAIDVIRETLVLPASAGRLRAM 384


>gi|313205251|ref|YP_004043908.1| GTP-binding protein hflx [Paludibacter propionicigenes WB4]
 gi|312444567|gb|ADQ80923.1| GTP-binding protein HflX [Paludibacter propionicigenes WB4]
          Length = 404

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 94/236 (39%), Gaps = 20/236 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + +L  I  LK ++     Q       R    ++ ++G++N GKS+L N ++K ++  
Sbjct: 165 DRRIILTKISLLKQNLKDIDKQMSTQRKNRGKMVRVALVGYTNVGKSTLMNLISKSEI-F 223

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + ++     +SDT G          +  K T  EV  ADL+L + 
Sbjct: 224 AENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPHHLVQSFKSTLDEVREADLLLHVV 283

Query: 307 EINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           +++               KEI  P     I I  K D + TYT + +  ++    E L  
Sbjct: 284 DVSHPNFEEQLEVVNQTLKEID-PLEKPMILIFNKIDAF-TYTPKDEDDLAPIKRENLS- 340

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAEN 408
            + ++K     K       I + ++      + + Y ++ +++ +     D + ++
Sbjct: 341 -LEELKKTWMGKMHDNCIFISAREKQNIDSLKALMYEKIKAIHVERYPYNDFLFQD 395


>gi|289706438|ref|ZP_06502796.1| GTP-binding protein HflX [Micrococcus luteus SK58]
 gi|289556933|gb|EFD50266.1| GTP-binding protein HflX [Micrococcus luteus SK58]
          Length = 444

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 19/197 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G++NAGKSSL N L    V +   +  T    +   +  +G    +SDT G     
Sbjct: 222 VAIAGYTNAGKSSLLNRLTHAGVLVENALFATLDPTVRKAMTPDGIGYTLSDTVGFVRNL 281

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPK---------NIDFIFIGTKS 329
                E  + T  EV +AD+IL + + +      +I+  +          I  I +  K+
Sbjct: 282 PTQLVEAFRSTLEEVADADVILHVVDGSHPDPEGQIAAVRSVFAEVDAHRIPEIIVLNKA 341

Query: 330 DLYSTY-------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           D             E +  ++S+ TGEG++EL   I + +     +L   +P  +  L  
Sbjct: 342 DAADPAVVARIRSKEPHAVVVSARTGEGIDELERAIAATIPRPDVRLELLVPFTRGELVS 401

Query: 383 LSQTVRYLEMASLNEKD 399
              +     +A   E+ 
Sbjct: 402 RLHSADAEILAEGYEEG 418


>gi|228990846|ref|ZP_04150811.1| hypothetical protein bpmyx0001_16080 [Bacillus pseudomycoides DSM
           12442]
 gi|228996944|ref|ZP_04156577.1| hypothetical protein bmyco0003_15280 [Bacillus mycoides Rock3-17]
 gi|228762823|gb|EEM11737.1| hypothetical protein bmyco0003_15280 [Bacillus mycoides Rock3-17]
 gi|228769372|gb|EEM17970.1| hypothetical protein bpmyx0001_16080 [Bacillus pseudomycoides DSM
           12442]
          Length = 419

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 103/270 (38%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAK------KDVAI 246
           I  L  ++ + ++Q +     R       + ++G++NAGKS++ N + +      +    
Sbjct: 171 IAVLNKELEALVAQRQTQRKQRKKNEIPVVSLVGYTNAGKSTIMNTMLEIFNGSTEKQVF 230

Query: 247 VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    +++L       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIELPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIEITNQTLKQIGVENIPTIYAYNKSDMMDVEIPKIQEDRVYLSAKQQIG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 IEELVEMIRSYIYKEYTKCEMLIPYDQGQV 380


>gi|325068593|ref|ZP_08127266.1| GTP-binding protein Era [Actinomyces oris K20]
          Length = 427

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 5/138 (3%)

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
             LD      +    + E  +     + +I          E  R G+   I+G  NAGKS
Sbjct: 88  VRLDADGFPILDGDDADESADSADSARVEIV----VPDFPEDFRAGF-ACIVGRPNAGKS 142

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           +L NA+    +AI +  P TTR  +   +  E   + + DT G+     ++ K       
Sbjct: 143 TLTNAMVGAKIAITSGRPQTTRHNVRGVIHKENAQIVLVDTPGLHRPRTLLGKRLNDLVR 202

Query: 294 LEVENADLILLLKEINSK 311
             + + D+++     N K
Sbjct: 203 ETLVDVDVVVFCIPANEK 220


>gi|315658402|ref|ZP_07911274.1| GTP-binding protein HflX [Staphylococcus lugdunensis M23590]
 gi|315496731|gb|EFU85054.1| GTP-binding protein HflX [Staphylococcus lugdunensis M23590]
          Length = 415

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 98/249 (39%), Gaps = 17/249 (6%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 124 LRAKSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRI 182

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      I  H  + +        ++I ++G++NAGKSS FN L+ +      ++   
Sbjct: 183 NEIKHQLQTIVEHRERYRNKREQNQVFQIALVGYTNAGKSSWFNVLSGES-TYEQNLLFA 241

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T  + L EG+ V I+DT G  +          K T  E +NAD++L + + +  +
Sbjct: 242 TLDPKTRQIQLNEGFNVIITDTVGFIQKLPTTLVAAFKSTLEEAKNADILLHIVDASHPE 301

Query: 313 ------------EISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISSFTGEGLEELINKIK 359
                       +      I  + +  K DL  ST        +S F        I K+K
Sbjct: 302 FRSQYETVNQLIQELEMDQIPQVVLFNKRDLCPSTMALPMSSSLSEFVSTQHHSDITKVK 361

Query: 360 SILSNKFKK 368
           ++L  + K+
Sbjct: 362 ALLIKQIKE 370


>gi|212223805|ref|YP_002307041.1| iron(II) transport protein B [Thermococcus onnurineus NA1]
 gi|212008762|gb|ACJ16144.1| iron(II) transport protein B [Thermococcus onnurineus NA1]
          Length = 658

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 93/237 (39%), Gaps = 35/237 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G+ N GK+++FNAL       V + PG T +     L+  G    + D  G     
Sbjct: 5   IALTGNPNVGKTTIFNALTG-MRQHVGNWPGVTVEKKEGILEYRGQKFLVVDLPGTYSLT 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYST 334
                E + R FL   +AD+++ + +  +         EI      + I    K+DL   
Sbjct: 64  AHSVDELVARDFLLKGSADVVVNVVDATALMRNLFLTMEILEMSLDNVIIALNKTDLAEK 123

Query: 335 YTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKK---LPFSIPSHKRH 379
              E +               ++  G G+EEL  +I  + + K K    +P   P  +R 
Sbjct: 124 RGIEINVKRMEEVLGVPIVPLNAKEGIGIEELKERIYQMANGKLKAHPVIPTYDPEVERE 183

Query: 380 LYHLSQTVRYLEMASL-NEKDCGLDIIAEN---LRLASVSLGKITGCVDVEQLLDII 432
           + H++  +R   +A   + +   + ++  +   ++L    LGK        + LD I
Sbjct: 184 IEHITAALRNTPLAEKYSLRWLAIKLLQRDDGVIKLILRHLGK--------EKLDEI 232


>gi|126698368|ref|YP_001087265.1| putative ATP/GTP-binding protein [Clostridium difficile 630]
 gi|255099903|ref|ZP_05328880.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-63q42]
 gi|255305792|ref|ZP_05349964.1| putative ATP/GTP-binding protein [Clostridium difficile ATCC 43255]
 gi|115249805|emb|CAJ67622.1| putative GTP-binding protein, HflX type [Clostridium difficile]
          Length = 427

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 29/247 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAK- 241
               + +LN    ++ ++       +   + R   N   + ++G++NAGKS+L N L K 
Sbjct: 165 EIDKRHILNKAADIRRELKEVKKNRETQRVKRLKSNIPIVALVGYTNAGKSTLLNELIKT 224

Query: 242 ------KDVAIVTDIPGTTRDV-LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
                 +    V D+   T DV L   L        + DT G          E  K T  
Sbjct: 225 HKDYEQEKEVFVKDMLFATLDVTLRKALLPNKKEFLVVDTVGFVSKLPHDLVEAFKATLE 284

Query: 295 EVENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYS----TYTE 337
           EV+ ADLIL + +  +              KE+    +   I +  K D         ++
Sbjct: 285 EVQYADLILHVIDATNTSYELQKSTTEGVLKELGV-NDKKHILVYNKVDKLELDIYPKSQ 343

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
           E    IS+  G  +++L+N I+  L      +   +P  +  ++   +    +E     E
Sbjct: 344 EDIVYISAKQGINMDKLLNMIEIALMENTYSVSLMLPYERGDIFSRIKDKYNVENFEYGE 403

Query: 398 KDCGLDI 404
               LD+
Sbjct: 404 SGITLDV 410


>gi|229084827|ref|ZP_04217084.1| hypothetical protein bcere0022_14560 [Bacillus cereus Rock3-44]
 gi|228698476|gb|EEL51204.1| hypothetical protein bcere0022_14560 [Bacillus cereus Rock3-44]
          Length = 419

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 104/270 (38%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAK------KDVAI 246
           I  L  ++ +H++Q +     R       + ++G++NAGKS++ N + +      +    
Sbjct: 171 IAVLNKELEAHVAQRQTQRKQRKKNEIPVVSLVGYTNAGKSTIMNTMLEVFNGSTEKQVF 230

Query: 247 VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    +++L       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIELPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KE---INSKKEISF---------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEG 350
            +    N ++ I            +NI  I+   KSD+        +E    +S+    G
Sbjct: 291 VDYANPNYEQLIEITNQTLKQIGVENIPTIYAYNKSDMMDVEIPKMQEDRVYLSAKQQIG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 IEELVEMIRSHIYKEYTKCQMLIPYDQGQV 380


>gi|229174365|ref|ZP_04301898.1| hypothetical protein bcere0006_34580 [Bacillus cereus MM3]
 gi|228609222|gb|EEK66511.1| hypothetical protein bcere0006_34580 [Bacillus cereus MM3]
          Length = 424

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 104/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQW-------IDKL 165
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q        + + 
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKI 222
             +             E       + + + +  +K  ++    H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRVDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F    L  +   I++ +  +  +    IP  +
Sbjct: 319 DELHQNFIPFPKSDFLMTSAFEQSDLLHIKEAIETKMKEEMNRYQVEIPPSE 370


>gi|83311472|ref|YP_421736.1| GTPase [Magnetospirillum magneticum AMB-1]
 gi|82946313|dbj|BAE51177.1| GTPase [Magnetospirillum magneticum AMB-1]
          Length = 435

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 100/265 (37%), Gaps = 28/265 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  +S + S L   W         F         + +       E + 
Sbjct: 121 RARTREGTLQVELAALSYQRSRLVRSWTHLERQRGGFGFLGGPGETQIEADRRMIGERIV 180

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +     D+       +          + ++G++NAGKS+LFN L + +V +  D+   T
Sbjct: 181 KLERELEDVKRTRDLHRKARRRVPYPIVALVGYTNAGKSTLFNQLTRAEV-LAKDMLFAT 239

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            D    DL L  G  + +SDT G             + T  EV  AD+++ +++++    
Sbjct: 240 LDPTMRDLVLPSGRKIILSDTVGFISDLPHELVAAFRATLEEVLEADVVVHVRDVSHPDT 299

Query: 312 -----------KEISFPKNIDFIFI--GTKSDLYS----------TYTEEYDHLISSFTG 348
                      KE+   + +D   +    K DL                E    +S+ TG
Sbjct: 300 EAQAADVDTVLKELGLAEVVDRGLVEALNKIDLLDDERRQEVLNQARRREGVMALSAVTG 359

Query: 349 EGLEELINKIKSILSNKFKKLPFSI 373
           +G++EL+ ++   L +  + +  ++
Sbjct: 360 QGVDELLAELDRRLGHARETIDVAL 384


>gi|26249489|ref|NP_755529.1| hypothetical protein c3654 [Escherichia coli CFT073]
 gi|26109897|gb|AAN82102.1|AE016766_190 Hypothetical protein yeeP [Escherichia coli CFT073]
 gi|47600677|emb|CAE55799.1| hypothetical protein YeeP [Escherichia coli Nissle 1917]
 gi|307555015|gb|ADN47790.1| putative GTPase [Escherichia coli ABU 83972]
          Length = 290

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   GY + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGYSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILQCGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + +   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWEVDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|158313083|ref|YP_001505591.1| small GTP-binding protein [Frankia sp. EAN1pec]
 gi|158108488|gb|ABW10685.1| small GTP-binding protein [Frankia sp. EAN1pec]
          Length = 503

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 19/178 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G++NAGKSSL N L    V +   +  T    +      +G +  ++DT G     
Sbjct: 287 VAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTVRRATLPDGRIFTLADTVGFVRHL 346

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI------------SFPKNIDFIFIGTKS 329
                E  + T  EV +ADL+L + + ++   +                 +  + +  K 
Sbjct: 347 PHQIVEAFRSTLEEVVDADLVLHVVDGSAPDPMGQISAVREVLAEIDAAGVPELIVVNKV 406

Query: 330 DLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           D     T             +S+ +G GL+EL+  + + + +   ++   +P  +  L
Sbjct: 407 DAVDPTTLAVLRQAVPDAIFVSARSGAGLQELVEALSARIPHPEVEMSLLVPYTRGDL 464


>gi|237748852|ref|ZP_04579332.1| GTP-binding protein Era [Oxalobacter formigenes OXCC13]
 gi|229380214|gb|EEO30305.1| GTP-binding protein Era [Oxalobacter formigenes OXCC13]
          Length = 299

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 8/118 (6%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+GY I I+G  N GKS+L N L    V+I +    TTR  +      E       DT G
Sbjct: 10  RSGY-IAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRIMGIQTDEDTQFIYIDTPG 68

Query: 277 IRETDDIVEKEGIKRTFL-EVENADLILLLKEIN----SKKEI--SFPKNIDFIFIGT 327
            +   +    + + +T    + +AD+IL + + +    + +++    PK +  I +  
Sbjct: 69  FQTRYNNALNKTLNKTVTNTLTSADVILFVVDADVFGQADQQVLDLIPKKVPTILVIN 126


>gi|152975231|ref|YP_001374748.1| GTP-binding protein HSR1-related [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023983|gb|ABS21753.1| GTP-binding protein HSR1-related [Bacillus cytotoxicus NVH 391-98]
          Length = 419

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 101/270 (37%), Gaps = 26/270 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T+  +          +        + L      +        E+ ++    +++   
Sbjct: 112 RAKTKEAQLQVEVAHLQYMMPRLVGLRESLGRQSGGVGTKNKGVGEKKLE-LDRRKIEEQ 170

Query: 196 ILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAK------KDVAI 246
           I  L  ++ + + Q K     R       + ++G++NAGKS+  NA+ +      +    
Sbjct: 171 ISVLNKELEALVVQRKTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIFNGTIEKQVF 230

Query: 247 VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D+   T +    +++L       ++DT G          +  + T  EV  ADL++ +
Sbjct: 231 EKDMLFATLETSVRNIELPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHV 290

Query: 306 KEINSKKEISFP------------KNIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEG 350
            + ++                   +NI  I+   KSD+       T++    +S+    G
Sbjct: 291 VDYSNPNYEQLIEITNQTLKQIGVENIPTIYAYNKSDMMDVEIPKTKKDRVYLSAKKQIG 350

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           +EEL+  I+S +  ++ K    IP  +  +
Sbjct: 351 MEELVEMIRSHIYKEYTKCEMLIPYDQGQI 380


>gi|317489521|ref|ZP_07948031.1| ferrous iron transporter B [Eggerthella sp. 1_3_56FAA]
 gi|316911450|gb|EFV33049.1| ferrous iron transporter B [Eggerthella sp. 1_3_56FAA]
          Length = 694

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 11/151 (7%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIV---ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +  ++ + +     G  + +G       +LG  N+GKS+LFNAL       V + PG T 
Sbjct: 1   MLEELDAAV-SAPSGAAVVSGAPTCSVALLGQPNSGKSTLFNALTGS-RQRVGNWPGKTV 58

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +         G    + D  G        E+E + R ++    AD++ +L + +  +   
Sbjct: 59  EKKEGGFSRGGVDYAVCDLPGTYSLSANSEEEVVTRDYIASGRADVVCVLADASQLERSL 118

Query: 316 FPK------NIDFIFIGTKSDLYSTYTEEYD 340
           +        +   + +    D+     +  D
Sbjct: 119 YMLADFAGVDCACMLVLNLMDVAEAQGKRID 149


>gi|149184562|ref|ZP_01862880.1| GTPase [Erythrobacter sp. SD-21]
 gi|148831882|gb|EDL50315.1| GTPase [Erythrobacter sp. SD-21]
          Length = 407

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 101/272 (37%), Gaps = 37/272 (13%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E + ++ +  +  + S L   W   L   R          E +       + +   
Sbjct: 92  AATAEGRLQVELAHLDYQQSRLVRSWTH-LERQRGGFGFLGGPGETQI--EADRRMIRQR 148

Query: 196 ILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  L+ ++        L    R       + ++G++NAGKS+LFN L   +V    D+  
Sbjct: 149 MGRLRKELEQVRKTRGLHRERRERAPWPVVALVGYTNAGKSTLFNRLTGAEVM-AEDLLF 207

Query: 253 TTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D     + L G     +SDT G             + T  EV  AD+I  +++I++ 
Sbjct: 208 ATLDPTMRAISLPGVEKAILSDTVGFISDLPTQLVAAFRATLEEVTAADVICHVRDISNS 267

Query: 312 -------KEISFPKNIDFI------------FIGTKSDLYSTYT----------EEYDHL 342
                  + +   K +D I             +  K DL                +    
Sbjct: 268 SAEAQKTQVLRVLKGLDVIDGDDGTSSIPILEVWNKWDLLDDEKADELGQLADNSDDIIR 327

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           IS+ TGEG++EL+ ++  +L+ K     F +P
Sbjct: 328 ISAVTGEGVQELLVQLGEMLTAKASVREFEVP 359


>gi|306822848|ref|ZP_07456224.1| GTP-binding protein Era [Bifidobacterium dentium ATCC 27679]
 gi|304553480|gb|EFM41391.1| GTP-binding protein Era [Bifidobacterium dentium ATCC 27679]
          Length = 333

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 77/206 (37%), Gaps = 34/206 (16%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L  +   + + DT 
Sbjct: 23  YRSGF-VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTP 81

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------------------KKEIS 315
           GI     ++ +         + + D I  L   +                     + + +
Sbjct: 82  GIHRPRTLLGQRLNDVVDESLADVDAIAFLLPGDQEIGPGDKRILSRLRSEFAAKRDDGT 141

Query: 316 FPKNIDFIFIGTKSD------LYSTYTEEYDH-------LISSFTGEGLEELINKIKSIL 362
           F   +  I I TK D      L +   E  +         +S+   + L E+ N +   +
Sbjct: 142 FKWKVPLIAIVTKIDELSREGLINKLIEINEFADFTDIVPVSALKHDNLSEVRNVLVENM 201

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVR 388
               +  P    + +R    +++ VR
Sbjct: 202 PEGPQMYPAEQITEERPEDTIAELVR 227


>gi|163815083|ref|ZP_02206470.1| hypothetical protein COPEUT_01239 [Coprococcus eutactus ATCC 27759]
 gi|158449766|gb|EDP26761.1| hypothetical protein COPEUT_01239 [Coprococcus eutactus ATCC 27759]
          Length = 441

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 100/285 (35%), Gaps = 32/285 (11%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L G   D L+ +   I       ++ ++     +E ++ +      + + 
Sbjct: 142 LAQLKFRATRLIG-MRDSLSRLGGGIGTRGPGEKKLEIDRRVIRERISRLKAELRTVEAQ 200

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-E 265
             Q +            I+G++NAGKS+L NA+    V +  D    T D  T +  L  
Sbjct: 201 RMQQRKQRQRSAVPVAGIVGYTNAGKSTLLNAMTGAGV-LEEDKLFATLDPTTRNYRLPG 259

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------------- 310
           G  + ++DT G          E    T  E +  D+I+ + +++                
Sbjct: 260 GQNILLTDTVGFIRKLPHHLVEAFGSTLEEAKYCDVIIHVVDVSDVNWDKNIETVYHTLK 319

Query: 311 KKEISFPKNIDFIFIGTKSDLYST--------YTEEYDHLISSFTGEGLEELINKIKSIL 362
           + +I        I +  K D               +    +S+  G+GL+EL + I+ IL
Sbjct: 320 QLKIDEKSGKPIITVFNKVDKIEKDDLVGVRDLRADRTIYVSAKNGQGLDELASAIEEIL 379

Query: 363 SNKFKKLPFSIPSHKRHLYHL------SQTVRYLEMASLNEKDCG 401
            N+   +  +       L  L       +T  YL+     E    
Sbjct: 380 RNQKIYIRHTFAYSDAGLTGLIHKYGEIKTEEYLDDGIFIEAYVP 424


>gi|121997462|ref|YP_001002249.1| GTP-binding protein, HSR1-like [Halorhodospira halophila SL1]
 gi|121588867|gb|ABM61447.1| GTP-binding protein HflX [Halorhodospira halophila SL1]
          Length = 445

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 101/301 (33%), Gaps = 34/301 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    S L   W   L   +  I       ++ ++        + 
Sbjct: 132 RARTFEGRLQVELAQLKHVASRLVRGWSH-LERQKGGIGLRGPGEKQLEMDRRLIGGRIQ 190

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+     R    + ++G++NAGKS+LFN +         D    T
Sbjct: 191 QIERRLAKVRRTREQGRKARRKRELPVVSLVGYTNAGKSTLFNHVTGSQR-RAEDRLFAT 249

Query: 255 RDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     +DL  G    +SDT G             + T  EV +ADL+L + +  +++ 
Sbjct: 250 LDPSWRRVDLARGSAAVVSDTVGFISRLPHDLVAAFRSTLEEVTDADLLLHVIDAGAEER 309

Query: 314 ISFPKN------------IDFIFIGTKSDLYSTYTEEYD--------HLISSFTGEGLEE 353
               +             +  + +  K D  +      +          IS+ TGEG+E 
Sbjct: 310 EHQIEQVEAVLAELGADAVPTLRVYNKVDTCALAPGRIEDDEGLVTGVRISAATGEGVET 369

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           L+  +   L           P   R   HL      L            +  AE+ +LA 
Sbjct: 370 LLEAVAERLG----------PERIRRRVHLRPDQGRLRAQLFRLGCVIEEHCAEDGQLAL 419

Query: 414 V 414
            
Sbjct: 420 E 420


>gi|299143854|ref|ZP_07036934.1| GTP-binding protein HflX [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518339|gb|EFI42078.1| GTP-binding protein HflX [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 433

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 95/253 (37%), Gaps = 26/253 (10%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGK--LGEIIRNGY-KIVILGHSNAGKSSLFNA 238
           E +     + +L +I  +K  +            + + N    + ++G++NAGKS++ N 
Sbjct: 168 EQIIETDRRRLLREIETIKAKLKKSEKTRDTMRSKRLENRISTVSLVGYTNAGKSTILNR 227

Query: 239 L--AKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
           L  +      V D+   T D  +    L  G    +SDT G          E  K T  E
Sbjct: 228 LKVSDSKDVYVEDMLFATLDPNSRRAKLPNGIEFILSDTVGFVSKLPTKLIEAFKSTLEE 287

Query: 296 VENADLILLLKEINSKK-EISFP-----------KNIDFIFIGTKSD-------LYSTYT 336
           ++ +DLIL + + +S   EI +                 I +  K D       L +   
Sbjct: 288 IKYSDLILHVIDASSDDLEIQYETTMNILKDLKIDGDKVITVFNKMDKLEGSDILINPKY 347

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395
            +    IS+   + +++L+  I+  L  KFK +   I   +   L  +    +  E+  L
Sbjct: 348 TDKRLYISAKFDDDMDKLLKFIEENLPEKFKHVKMLIDYKNSVVLSEILDNHKCEELEYL 407

Query: 396 NEKDCGLDIIAEN 408
           NE      I+   
Sbjct: 408 NEGVSFKVILTIE 420


>gi|160885086|ref|ZP_02066089.1| hypothetical protein BACOVA_03084 [Bacteroides ovatus ATCC 8483]
 gi|293368751|ref|ZP_06615355.1| GTP-binding protein HflX [Bacteroides ovatus SD CMC 3f]
 gi|156109436|gb|EDO11181.1| hypothetical protein BACOVA_03084 [Bacteroides ovatus ATCC 8483]
 gi|292636056|gb|EFF54544.1| GTP-binding protein HflX [Bacteroides ovatus SD CMC 3f]
          Length = 419

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 19/207 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +LN +  LK  + + I + K  +    G   ++ ++G++N GKS++ N L+K +
Sbjct: 181 EMDRRIILNRMSLLKERL-AEIDKQKATQRKNRGRMIRVALVGYTNVGKSTMMNLLSKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     +SDT G          E  K T  EV  ADL++
Sbjct: 240 V-FAENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTDLVESFKSTLDEVREADLLV 298

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            + +I+    +++I                 I +  K D Y TY E+    ++  T E L
Sbjct: 299 HVVDISHPGFEEQIEVVNKTLAEIGGSGKPMILVFNKIDAY-TYVEKAPDDLTPRTKENL 357

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKR 378
              + ++      K +     I + +R
Sbjct: 358 T--LEELMKTWMAKMEDNCLFISARER 382


>gi|15841876|ref|NP_336913.1| GTP-binding protein Era [Mycobacterium tuberculosis CDC1551]
 gi|31793541|ref|NP_856034.1| GTP-binding protein Era [Mycobacterium bovis AF2122/97]
 gi|57116977|ref|YP_177873.1| GTP-binding protein Era [Mycobacterium tuberculosis H37Rv]
 gi|121638243|ref|YP_978467.1| GTP-binding protein Era [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662196|ref|YP_001283719.1| GTP-binding protein Era [Mycobacterium tuberculosis H37Ra]
 gi|148823567|ref|YP_001288321.1| GTP-binding protein Era [Mycobacterium tuberculosis F11]
 gi|167968758|ref|ZP_02551035.1| GTP-binding protein Era [Mycobacterium tuberculosis H37Ra]
 gi|215404290|ref|ZP_03416471.1| GTP-binding protein Era [Mycobacterium tuberculosis 02_1987]
 gi|215412110|ref|ZP_03420874.1| GTP-binding protein Era [Mycobacterium tuberculosis 94_M4241A]
 gi|215427740|ref|ZP_03425659.1| GTP-binding protein Era [Mycobacterium tuberculosis T92]
 gi|215431304|ref|ZP_03429223.1| GTP-binding protein Era [Mycobacterium tuberculosis EAS054]
 gi|215446608|ref|ZP_03433360.1| GTP-binding protein Era [Mycobacterium tuberculosis T85]
 gi|218754092|ref|ZP_03532888.1| GTP-binding protein Era [Mycobacterium tuberculosis GM 1503]
 gi|219558355|ref|ZP_03537431.1| GTP-binding protein Era [Mycobacterium tuberculosis T17]
 gi|224990737|ref|YP_002645424.1| GTP-binding protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798558|ref|YP_003031559.1| GTP-binding protein era [Mycobacterium tuberculosis KZN 1435]
 gi|254365141|ref|ZP_04981187.1| GTP-binding protein era [Mycobacterium tuberculosis str. Haarlem]
 gi|254551411|ref|ZP_05141858.1| GTP-binding protein Era [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260187367|ref|ZP_05764841.1| GTP-binding protein Era [Mycobacterium tuberculosis CPHL_A]
 gi|260201488|ref|ZP_05768979.1| GTP-binding protein Era [Mycobacterium tuberculosis T46]
 gi|260205665|ref|ZP_05773156.1| GTP-binding protein Era [Mycobacterium tuberculosis K85]
 gi|289443885|ref|ZP_06433629.1| GTP-binding protein Era [Mycobacterium tuberculosis T46]
 gi|289448006|ref|ZP_06437750.1| GTP-binding protein Era [Mycobacterium tuberculosis CPHL_A]
 gi|289553846|ref|ZP_06443056.1| GTP-binding protein era [Mycobacterium tuberculosis KZN 605]
 gi|289570506|ref|ZP_06450733.1| GTP-binding protein era [Mycobacterium tuberculosis T17]
 gi|289575058|ref|ZP_06455285.1| GTP-binding protein era [Mycobacterium tuberculosis K85]
 gi|289746142|ref|ZP_06505520.1| GTP-binding protein era [Mycobacterium tuberculosis 02_1987]
 gi|289750963|ref|ZP_06510341.1| GTP-binding protein era [Mycobacterium tuberculosis T92]
 gi|289754469|ref|ZP_06513847.1| GTP-binding protein Era [Mycobacterium tuberculosis EAS054]
 gi|289758488|ref|ZP_06517866.1| GTP-binding protein [Mycobacterium tuberculosis T85]
 gi|289762530|ref|ZP_06521908.1| GTP-binding protein era [Mycobacterium tuberculosis GM 1503]
 gi|294994532|ref|ZP_06800223.1| GTP-binding protein Era [Mycobacterium tuberculosis 210]
 gi|297634966|ref|ZP_06952746.1| GTP-binding protein Era [Mycobacterium tuberculosis KZN 4207]
 gi|297731958|ref|ZP_06961076.1| GTP-binding protein Era [Mycobacterium tuberculosis KZN R506]
 gi|298525846|ref|ZP_07013255.1| GTP-binding protein Era [Mycobacterium tuberculosis 94_M4241A]
 gi|306776629|ref|ZP_07414966.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu001]
 gi|306780402|ref|ZP_07418739.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu002]
 gi|306785152|ref|ZP_07423474.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu003]
 gi|306789513|ref|ZP_07427835.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu004]
 gi|306793838|ref|ZP_07432140.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu005]
 gi|306798235|ref|ZP_07436537.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu006]
 gi|306804111|ref|ZP_07440779.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu008]
 gi|306808683|ref|ZP_07445351.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu007]
 gi|306968512|ref|ZP_07481173.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu009]
 gi|306972741|ref|ZP_07485402.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu010]
 gi|307080446|ref|ZP_07489616.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu011]
 gi|307085042|ref|ZP_07494155.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu012]
 gi|313659292|ref|ZP_07816172.1| GTPase Era [Mycobacterium tuberculosis KZN V2475]
 gi|61223693|sp|P0A562|ERA_MYCTU RecName: Full=GTPase Era
 gi|61223694|sp|P0A563|ERA_MYCBO RecName: Full=GTPase Era
 gi|189037654|sp|A1KL54|ERA_MYCBP RecName: Full=GTPase Era
 gi|189037657|sp|A5U557|ERA_MYCTA RecName: Full=GTPase Era
 gi|254783661|sp|C1AQS7|ERA_MYCBT RecName: Full=GTPase Era
 gi|13882142|gb|AAK46727.1| GTP-binding protein, Era/ThdF family [Mycobacterium tuberculosis
           CDC1551]
 gi|31619134|emb|CAD97246.1| PROBABLE GTP-BINDING PROTEIN ERA [Mycobacterium bovis AF2122/97]
 gi|41353691|emb|CAE55479.1| PROBABLE GTP-BINDING PROTEIN ERA [Mycobacterium tuberculosis H37Rv]
 gi|121493891|emb|CAL72366.1| Probable GTP-binding protein era [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|134150655|gb|EBA42700.1| GTP-binding protein era [Mycobacterium tuberculosis str. Haarlem]
 gi|148506348|gb|ABQ74157.1| GTP-binding protein Era [Mycobacterium tuberculosis H37Ra]
 gi|148722094|gb|ABR06719.1| GTP-binding protein era [Mycobacterium tuberculosis F11]
 gi|224773850|dbj|BAH26656.1| GTP-binding protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320061|gb|ACT24664.1| GTP-binding protein era [Mycobacterium tuberculosis KZN 1435]
 gi|289416804|gb|EFD14044.1| GTP-binding protein Era [Mycobacterium tuberculosis T46]
 gi|289420964|gb|EFD18165.1| GTP-binding protein Era [Mycobacterium tuberculosis CPHL_A]
 gi|289438478|gb|EFD20971.1| GTP-binding protein era [Mycobacterium tuberculosis KZN 605]
 gi|289539489|gb|EFD44067.1| GTP-binding protein era [Mycobacterium tuberculosis K85]
 gi|289544260|gb|EFD47908.1| GTP-binding protein era [Mycobacterium tuberculosis T17]
 gi|289686670|gb|EFD54158.1| GTP-binding protein era [Mycobacterium tuberculosis 02_1987]
 gi|289691550|gb|EFD58979.1| GTP-binding protein era [Mycobacterium tuberculosis T92]
 gi|289695056|gb|EFD62485.1| GTP-binding protein Era [Mycobacterium tuberculosis EAS054]
 gi|289710036|gb|EFD74052.1| GTP-binding protein era [Mycobacterium tuberculosis GM 1503]
 gi|289714052|gb|EFD78064.1| GTP-binding protein [Mycobacterium tuberculosis T85]
 gi|298495640|gb|EFI30934.1| GTP-binding protein Era [Mycobacterium tuberculosis 94_M4241A]
 gi|308214948|gb|EFO74347.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu001]
 gi|308326724|gb|EFP15575.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu002]
 gi|308330137|gb|EFP18988.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu003]
 gi|308333998|gb|EFP22849.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu004]
 gi|308337779|gb|EFP26630.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu005]
 gi|308341460|gb|EFP30311.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu006]
 gi|308344946|gb|EFP33797.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu007]
 gi|308349257|gb|EFP38108.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu008]
 gi|308353877|gb|EFP42728.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu009]
 gi|308357822|gb|EFP46673.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu010]
 gi|308361768|gb|EFP50619.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu011]
 gi|308365390|gb|EFP54241.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu012]
 gi|323719031|gb|EGB28179.1| GTP-binding protein era [Mycobacterium tuberculosis CDC1551A]
 gi|326903980|gb|EGE50913.1| GTP-binding protein era [Mycobacterium tuberculosis W-148]
 gi|328458326|gb|AEB03749.1| GTP-binding protein era [Mycobacterium tuberculosis KZN 4207]
          Length = 300

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 81/235 (34%), Gaps = 34/235 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L NAL    VAI +  P TTR  +   +  + + + + DT G+    
Sbjct: 9   VCLVGRPNTGKSTLTNALVGAKVAITSTRPQTTRHAIRGIVHSDDFQIILVDTPGLHRPR 68

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----------SKKEISFPKNIDFIFIGTKSD 330
            ++ K             D+I L    +            +   + P N   + I TK D
Sbjct: 69  TLLGKRLNDLVRETYAAVDVIGLCIPADEAIGPGDRWIVEQLRSTGPANTTLVVIVTKID 128

Query: 331 LYSTYT--------------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                                     +S+ TG+ ++ LI+ + + L       P    + 
Sbjct: 129 KVPKEKVVAQLVAVSELVTNAAEIVPVSAMTGDRVDLLIDVLAAALPAGPAYYPDGELTD 188

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
           +     +++ +R          +    +           + +++     + L+D+
Sbjct: 189 EPEEVLMAELIRE-AALQGVRDELPHSLAVV--------IDEVSPREGRDDLIDV 234


>gi|296112906|ref|YP_003626844.1| GTP-binding proten HflX [Moraxella catarrhalis RH4]
 gi|295920600|gb|ADG60951.1| GTP-binding proten HflX [Moraxella catarrhalis RH4]
          Length = 469

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 105/318 (33%), Gaps = 40/318 (12%)

Query: 120 NGKIDLLEAESLADLISSE------------------TEMQRRLSMEGMSGELSSLYGQW 161
           N  +   +  +L  LI                      E + ++ +  ++   + L   W
Sbjct: 91  NHTLTPSQERNLESLIKCRVLDRTGLILDIFAQRARTHEGKLQVELAQLNHLATRLVRGW 150

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
              L   +  I        + +      +  +  +    + +     QG+      +   
Sbjct: 151 TH-LERQKGGIGLRGPGETQLETDRRLLQIRVTQLKAKLDKVKQTRKQGRAKRQKSDIPT 209

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280
           I ++G++NAGKS+LFN L   ++    D    T D     +   G   V ++DT G    
Sbjct: 210 ISLVGYTNAGKSTLFNHLTDDNI-YAADQLFATLDPTLRRVKWPGVGNVVLADTVGFVRH 268

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----------ISFPKNIDFIFIGTKS 329
                 E    T  E   ADL+L + +  S+                  +   + +  K 
Sbjct: 269 LPHELVESFHATLEETLEADLLLHVIDAASEDMHAQIEAVNDVLEQIQADAPILLVFNKI 328

Query: 330 DLYSTYTE--------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           D      +         +   +S+    G+ +L+  ++ +LS +      ++P H   L 
Sbjct: 329 DKSGEPAKIHYQDHGVPHRVYVSAKENLGINQLMLAVQELLSGQLNHYTLTLPHHAGALK 388

Query: 382 HLSQTVRYLEMASLNEKD 399
           +    +  +E  S +E  
Sbjct: 389 NTLHELGVIESESFDELG 406


>gi|158320815|ref|YP_001513322.1| GTP-binding protein HSR1-related [Alkaliphilus oremlandii OhILAs]
 gi|158141014|gb|ABW19326.1| GTP-binding protein HSR1-related [Alkaliphilus oremlandii OhILAs]
          Length = 429

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 89/222 (40%), Gaps = 31/222 (13%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYK-------IVILGHSNAGKSSLFNALAK- 241
           +     IL   +DI S + + +    ++ G +       + ++G++NAGKS+L N L K 
Sbjct: 168 ETDRRHILKRIDDIESELKEVRKNREVQRGKRSKSEIPIVALVGYTNAGKSTLMNTLLKL 227

Query: 242 ------KDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFL 294
                      V D+   T DV    L         ++DT G             K T  
Sbjct: 228 SDHHDDTKEVYVEDMLFATLDVSLRRLSFPDKLDFILTDTVGFVSKLPHALVNAFKATLE 287

Query: 295 EVENADLILLLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTYT----EE 338
           EV+ ADL++ + + ++++                 +N + I +  K D  S       EE
Sbjct: 288 EVKYADLLIHVIDASNEEYNLQKDTTLGVLNDLGVENKNIITVYNKIDKISDEALLPKEE 347

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               IS+ T + ++ LI KI++ +     ++   IP  K +L
Sbjct: 348 NCIHISAVTHKNIDVLIEKIRAEIGPDIIEVDLLIPYDKGNL 389


>gi|327401128|ref|YP_004341967.1| small GTP-binding protein [Archaeoglobus veneficus SNP6]
 gi|327316636|gb|AEA47252.1| small GTP-binding protein [Archaeoglobus veneficus SNP6]
          Length = 353

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 81/233 (34%), Gaps = 18/233 (7%)

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI----- 224
             IEA +   EEE  +   +K   + I  LK  ++    + +       G +  I     
Sbjct: 1   MDIEAQIKALEEEIKRTPYNKATEHHIGRLKAKLARLREEAEKRRKKGGGVQFSIKKEGD 60

Query: 225 -----LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
                +G  + GKS+L N L     + V D   TT   +   L+ +G  ++I D  G+ E
Sbjct: 61  ATVVLVGFPSVGKSTLLNVLTGA-KSEVADYNFTTLKPVPGMLEYKGARIQIVDVPGLIE 119

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI----DFIFIGTKSDLYSTY 335
                   G +     +  AD+ILL+ ++ +  +I   K               D+    
Sbjct: 120 GASKGRGRGKE-VISAIRTADMILLVVDVFNLHQIDVLKKELYEGGIRLNQRPPDVTIKK 178

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            E     I+S     + E  + I  IL          +      +  L   ++
Sbjct: 179 KERGGIKITSTVPLSIGE--DTIMEILREYRTHNADVLIREDVTIERLIDAIQ 229


>gi|228472917|ref|ZP_04057674.1| GTP-binding protein HflX [Capnocytophaga gingivalis ATCC 33624]
 gi|228275499|gb|EEK14276.1| GTP-binding protein HflX [Capnocytophaga gingivalis ATCC 33624]
          Length = 407

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 82/217 (37%), Gaps = 16/217 (7%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L       I +    +    G   ++ ++G++N GKS+L N ++
Sbjct: 161 ETEIETDRRIVRDRIALLKKKLETIDKQMATQRGNRGALVRVALIGYTNVGKSTLMNLIS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K DV    D    T D     + +      +SDT G          E  K T  EV +AD
Sbjct: 221 KSDV-FAEDKLFATLDTTVRKVVIGNLPFLLSDTVGFIRKLPTELIESFKSTLDEVRDAD 279

Query: 301 LILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           L+L + +I+                     N   I +  K D Y+  T E D L++  T 
Sbjct: 280 LLLHVVDISHPNFEDHIASVNQILGEIKSINKPTIMVFNKIDAYTHLTIEDDDLMTEKTS 339

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
                L    ++ ++       F    +K ++    +
Sbjct: 340 RHFS-LEEWKQTWMNRMNGDAIFISAINKENIQEFRE 375


>gi|170683241|ref|YP_001744300.1| putative GTPase [Escherichia coli SMS-3-5]
 gi|170520959|gb|ACB19137.1| putative GTPase [Escherichia coli SMS-3-5]
          Length = 290

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELCTESVRGQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|157373937|ref|YP_001472537.1| GTP-binding protein, HSR1-related [Shewanella sediminis HAW-EB3]
 gi|157316311|gb|ABV35409.1| GTP-binding protein, HSR1-related [Shewanella sediminis HAW-EB3]
          Length = 432

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 112/305 (36%), Gaps = 29/305 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTYEGKLQVELAQLRHMSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIR 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I    + +     Q +      +   + ++G++NAGKS+LFN+L   +V    D    T
Sbjct: 173 TINRRLDKVDKQREQSRRSRRRSDLATVSLVGYTNAGKSTLFNSLTASNV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
            D     L+L    + ++DT G             K T  E   ADL+L + +   +   
Sbjct: 232 LDPTLRKLELRDGGIILADTVGFIRHLPHDLVAAFKATLQETREADLLLHIVDCADEDMG 291

Query: 312 ----------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLE 352
                     KEI   + I  + +  K DL    + + D+          +S+   +GLE
Sbjct: 292 DNFEQVQKVLKEIG-AEEIPQLVVCNKIDLLEDVSPKIDYDSEGIPTRVWVSAQQQKGLE 350

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
           +L   I +++     +L   IP+   H  +L Q  R   +      D G  I++  L  A
Sbjct: 351 QLKEAINALVGKTNLELTLQIPATAGH--YLGQFYRLDVIQQKEYDDLGNCILSVRLLEA 408

Query: 413 -SVSL 416
               L
Sbjct: 409 DWRRL 413


>gi|326559950|gb|EGE10348.1| GTP-binding proten HflX [Moraxella catarrhalis 46P47B1]
 gi|326577428|gb|EGE27312.1| GTP-binding proten HflX [Moraxella catarrhalis O35E]
          Length = 469

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 105/318 (33%), Gaps = 40/318 (12%)

Query: 120 NGKIDLLEAESLADLISSE------------------TEMQRRLSMEGMSGELSSLYGQW 161
           N  +   +  +L  LI                      E + ++ +  ++   + L   W
Sbjct: 91  NHTLTPSQERNLESLIKCRVLDRTGLILDIFAQRARTHEGKLQVELAQLNHLATRLVRGW 150

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
              L   +  I        + +      +  +  +    + +     QG+      +   
Sbjct: 151 TH-LERQKGGIGLRGPGETQLETDRRLLQIRVTQLKAKLDKVKQTRKQGRAKRQKSDIPT 209

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280
           I ++G++NAGKS+LFN L   ++    D    T D     +   G   V ++DT G    
Sbjct: 210 ISLVGYTNAGKSTLFNHLTDDNI-YAADQLFATLDPTLRRVKWPGVGNVVLADTVGFVRH 268

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----------ISFPKNIDFIFIGTKS 329
                 E    T  E   ADL+L + +  S+                  +   + +  K 
Sbjct: 269 LPHELVESFHATLEETLEADLLLHVIDAASEDMHAQIEAVNDVLEQIQADAPILLVFNKI 328

Query: 330 DLYSTYTE--------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           D      +         +   +S+    G+ +L+  ++ +LS +      ++P H   L 
Sbjct: 329 DKSGEPAKIHYQDHGVPHRVYVSAKENLGINQLMLAVQELLSGQLNHYTLTLPHHAGALK 388

Query: 382 HLSQTVRYLEMASLNEKD 399
           +    +  +E  S +E  
Sbjct: 389 NTLHELGVIESESFDELG 406


>gi|289642427|ref|ZP_06474573.1| GTP-binding proten HflX [Frankia symbiont of Datisca glomerata]
 gi|289507772|gb|EFD28725.1| GTP-binding proten HflX [Frankia symbiont of Datisca glomerata]
          Length = 464

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 92/263 (34%), Gaps = 24/263 (9%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           E + Q  L+       +      W + ++     I        + +      +  +  + 
Sbjct: 164 EGKAQVELAQLQY---MLPRLRGWGESMSRAGGGIGTRGPGETKIETDRRRLRARMARLR 220

Query: 198 FLKNDISSHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
                +   +   K     R+G   + I G++NAGKSSL N L    V +   +  T   
Sbjct: 221 RELAGM-KTVRTTKRSARQRSGIPAVAITGYTNAGKSSLLNRLTGAGVLVEDALFATLDP 279

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            +      +G    ++DT G          E  + T  EV +A+L+L + + +    +S 
Sbjct: 280 AVRRATLPDGRTFTLADTVGFVRHLPHQIVEAFRSTLEEVADANLLLHVVDGSHPDPMSQ 339

Query: 317 PK------------NIDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGLEELINK 357
                         ++  + +  K D            T     L+S+ TG+GL  L+ +
Sbjct: 340 ISAVRTVINDIGAGDVPELLVVNKIDAADPDVLARVRRTVPDAILVSARTGDGLTALVEE 399

Query: 358 IKSILSNKFKKLPFSIPSHKRHL 380
           +   + +   ++   +P  +  L
Sbjct: 400 LTERVPHPDVEVCVLLPFTRGDL 422


>gi|312622894|ref|YP_004024507.1| GTP-binding proten hflx [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203361|gb|ADQ46688.1| GTP-binding proten HflX [Caldicellulosiruptor kronotskyensis 2002]
          Length = 508

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 83/242 (34%), Gaps = 28/242 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRS-------FIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
               G+L     Q +  L  +R                   E       + +   I  +K
Sbjct: 268 RTKEGKLQVELAQLLTLLPRLRGTGVLLSRLGGGIGTRGPGETKLEIDRRHIQRRIEEIK 327

Query: 201 NDISSHISQ---GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            ++          +   I      + I+G++NAGKS+L N ++K DV I  D    T D 
Sbjct: 328 KELEKVKKNREVQRKSRIENQVPVVSIIGYTNAGKSTLMNRISKADVLI-EDKLFATLDT 386

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
            T  +  +G    ++DT G          E    T  EV+ ++LIL + +I+        
Sbjct: 387 TTRRVYHKGKEFLLTDTVGFIRNLPHHLVEAFSSTLEEVKYSNLILNVVDISDPYYYDHI 446

Query: 318 K------------NIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEGLEELINKIKS 360
           K            NI  I +  K D         +       IS+  G G+  L++ I  
Sbjct: 447 KVSEDLLKQLGAENIPVIRVYNKIDKVDLSSIDVFDNLPHVFISAQDGRGISTLLDMIVE 506

Query: 361 IL 362
            +
Sbjct: 507 RI 508


>gi|309801224|ref|ZP_07695353.1| ribosome biogenesis GTPase Era [Bifidobacterium dentium JCVIHMP022]
 gi|308222113|gb|EFO78396.1| ribosome biogenesis GTPase Era [Bifidobacterium dentium JCVIHMP022]
          Length = 327

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 77/206 (37%), Gaps = 34/206 (16%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L  +   + + DT 
Sbjct: 17  YRSGF-VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTP 75

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------------------KKEIS 315
           GI     ++ +         + + D I  L   +                     + + +
Sbjct: 76  GIHRPRTLLGQRLNDVVDESLADVDAIAFLLPGDQEIGPGDKRILSRLRSEFAAKRDDGT 135

Query: 316 FPKNIDFIFIGTKSD------LYSTYTEEYDH-------LISSFTGEGLEELINKIKSIL 362
           F   +  I I TK D      L +   E  +         +S+   + L E+ N +   +
Sbjct: 136 FKWKVPLIAIVTKIDELSREGLINKLIEINEFADFTDIVPVSALKHDNLSEVRNVLVENM 195

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVR 388
               +  P    + +R    +++ VR
Sbjct: 196 PEGPQMYPAEQITEERPEDTIAELVR 221


>gi|206901501|ref|YP_002250803.1| GTPase [Dictyoglomus thermophilum H-6-12]
 gi|206740604|gb|ACI19662.1| GTPase [Dictyoglomus thermophilum H-6-12]
          Length = 405

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 29/233 (12%)

Query: 198 FLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
            LK ++     + ++    R N  ++ ++G++NAGKS+LFN L   +V +V D+   T D
Sbjct: 163 ALKRELEDIKKEREIQRKKRLNLPQVALVGYTNAGKSTLFNLLTGANV-LVEDLLFATLD 221

Query: 257 VLTIDLD-LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---K 312
                ++    + V ISDT G             + T  E+   DLIL + +++ K   K
Sbjct: 222 PTVRKINFRNNWEVLISDTVGFIRNLPEELLTAFRATLEEIYYVDLILHVIDVSDKNFRK 281

Query: 313 EISF---------PKNIDFIFIGTKSDLYST-----YTEEYDHLISSF----TGEGLEEL 354
           +I            +    I +  K DL +        +E D+  S F       G+E L
Sbjct: 282 QIEVVESVLEEMGIEEKPIIRVYNKIDLLTKEEIRYLRQELDYRPSVFISAKERIGIERL 341

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
            + I S L    ++   +IP  K +++   +   Y+E     E++   D +  
Sbjct: 342 KDLIVSELLKGVRRYKINIPYDKYNVFQKYKGKLYIE-----EENYREDFVEI 389


>gi|47569228|ref|ZP_00239914.1| GTP-binding protein [Bacillus cereus G9241]
 gi|47554102|gb|EAL12467.1| GTP-binding protein [Bacillus cereus G9241]
          Length = 424

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 104/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKELLSELEINHIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F    L  +   I++ +  +  +    IP  +
Sbjct: 319 DELHQNFIPFPKNDFLMTSAFEENDLLHIKEAIETKMKEEMNRYHVEIPPSE 370


>gi|331640795|ref|ZP_08341930.1| conserved hypothetical protein [Escherichia coli H736]
 gi|331037593|gb|EGI09813.1| conserved hypothetical protein [Escherichia coli H736]
          Length = 303

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 111/273 (40%), Gaps = 30/273 (10%)

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+    +    + E +   L  L   +S HI +  L ++  +   I I+G S AGKSSL 
Sbjct: 8   FTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLC 66

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLE 295
           NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ D   E E + R    
Sbjct: 67  NALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDI-- 124

Query: 296 VENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           +   DL+L L + + +         + I    +   +F+ T++D  +    E+D      
Sbjct: 125 LPELDLVLWLIKADDRALSVDEYFWRHILHRGHQQVLFVVTQAD-KTEPCHEWDVAGIQP 183

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402
           +      +  K    +   F+ +   +    R  + L   V  L  A  +     L    
Sbjct: 184 SPAQARNIREK-TEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRL 242

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
             ++  E++R  +    + TG V      D IF
Sbjct: 243 QDELCTESVRSQARE--QFTGAV------DRIF 267


>gi|296445792|ref|ZP_06887744.1| GTP-binding proten HflX [Methylosinus trichosporium OB3b]
 gi|296256620|gb|EFH03695.1| GTP-binding proten HflX [Methylosinus trichosporium OB3b]
          Length = 462

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 97/268 (36%), Gaps = 31/268 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  +  + S L   W         F         + +      +E + 
Sbjct: 133 RARTKEGALQVELAHLEYQKSRLVRSWTHLERQRGGFGFLGGPGETQIETDRRLIEERMA 192

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +       +          + ++G++NAGKS+LFN L K  V +  D+   T
Sbjct: 193 RIERDLEQVKRTRGLHRKNRREVPYPVVALVGYTNAGKSTLFNRLTKAGV-LAEDMLFAT 251

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---- 309
            D     + L  G  V +SDT G       +     + T  EV  AD++L +++++    
Sbjct: 252 LDPTLRQIRLPHGAKVLLSDTVGFISDLPTMLITAFRATLEEVMLADVVLHVRDVSHEDW 311

Query: 310 -----------SKKEISFPKNIDFIFIGTKSDLYSTYT-------------EEYDHLISS 345
                      ++  +S       + +  K D                    E   L+S+
Sbjct: 312 EAQAEDVEAILAELGLSGEAGARILEVWNKIDALDPERLAALAVAAESAQGRERPSLVSA 371

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSI 373
            TGEGLE L+ +I+  L+    +L  ++
Sbjct: 372 LTGEGLEALLERIEQRLAEGRVELEIAL 399


>gi|229134499|ref|ZP_04263312.1| hypothetical protein bcere0014_34100 [Bacillus cereus BDRD-ST196]
 gi|228649120|gb|EEL05142.1| hypothetical protein bcere0014_34100 [Bacillus cereus BDRD-ST196]
          Length = 423

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 108/318 (33%), Gaps = 35/318 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKLTHIRSFI 172
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q    +  +    
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 173 EA----------DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
            A                + +      +  +++I      +  H  + +        +++
Sbjct: 140 LALSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKRQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 ALIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKS 329
                   + T  E   AD+IL + +      +                +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEQTVKQLLSDLEINHIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           D     +  + +    + S+F    L  +   +++ +  +       IP  +  L  L +
Sbjct: 319 DKLHQNFIPFPKSDFLMTSAFEESDLLRIKEALETKMKEEMNDYQVEIPPSEGRLLTLLK 378

Query: 386 TVRYLEMASLNEKDCGLD 403
           T   L      E     D
Sbjct: 379 TETILTKMEFLEDKFVYD 396


>gi|331675665|ref|ZP_08376410.1| conserved hypothetical protein [Escherichia coli TA280]
 gi|331067159|gb|EGI38569.1| conserved hypothetical protein [Escherichia coli TA280]
          Length = 276

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 6   SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 64

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 65  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 122

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 123 RHILHRGHQQVLFVVTQAD-KTEPCHEWDVAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 180

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 181 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 236

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 237 ----DRIF 240


>gi|254412656|ref|ZP_05026429.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196180391|gb|EDX75382.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 517

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 104/260 (40%), Gaps = 36/260 (13%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDI--SSHISQGKLGE--IIRNGYKIVILGHSNAGKSSL 235
           E+ +  + + K V   +  +++++   + +S+ +  E  + R    +VI G  ++GK+SL
Sbjct: 84  EKTEAASETLKAVRQQVQNIQDEVAQQALLSRSREIEATLARGELLVVIFGTGSSGKTSL 143

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTF 293
            NAL  + V  V    GTT    T  L L+G    + I+DT GI E   +V  +  +   
Sbjct: 144 INALIGQMVGQVGAPMGTTDQGQTYTLTLKGIERQILITDTPGILEAG-VVGTQREQLAR 202

Query: 294 LEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
                ADL+L + + + ++    P           + +  K+DLY+   +E         
Sbjct: 203 QLATEADLLLFVVDNDLRQSEYEPLRRLADIGKRSLLVLNKTDLYTETDKE--------- 253

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ---------TVRYLEMASLNEK 398
                 ++ +++  +            +       L            +  +   +   +
Sbjct: 254 -----TILARLRQQVRGFIAASDVVAIAANPQSIRLDNGEDFQPDPDIIPLIRRLAAVLR 308

Query: 399 DCGLDIIAENLRLASVSLGK 418
             G D+IA+N+ L S  LG+
Sbjct: 309 AEGQDLIADNILLQSQRLGE 328


>gi|171743043|ref|ZP_02918850.1| hypothetical protein BIFDEN_02168 [Bifidobacterium dentium ATCC
           27678]
 gi|283455946|ref|YP_003360510.1| GTP-binding protein Era [Bifidobacterium dentium Bd1]
 gi|171278657|gb|EDT46318.1| hypothetical protein BIFDEN_02168 [Bifidobacterium dentium ATCC
           27678]
 gi|283102580|gb|ADB09686.1| GTP-binding protein Era [Bifidobacterium dentium Bd1]
          Length = 333

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 77/206 (37%), Gaps = 34/206 (16%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L  +   + + DT 
Sbjct: 23  YRSGF-VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTP 81

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------------------KKEIS 315
           GI     ++ +         + + D I  L   +                     + + +
Sbjct: 82  GIHRPRTLLGQRLNDVVDESLADVDAIAFLLPGDQEIGPGDKRILSRLRSEFAAKRDDGT 141

Query: 316 FPKNIDFIFIGTKSD------LYSTYTEEYDH-------LISSFTGEGLEELINKIKSIL 362
           F   +  I I TK D      L +   E  +         +S+   + L E+ N +   +
Sbjct: 142 FKWKVPLIAIVTKIDELSREGLINKLIEINEFADFTDIVPVSALKHDNLSEVRNVLVENM 201

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVR 388
               +  P    + +R    +++ VR
Sbjct: 202 PEGPQMYPAEQITEERPEDTIAELVR 227


>gi|139438287|ref|ZP_01771840.1| Hypothetical protein COLAER_00829 [Collinsella aerofaciens ATCC
           25986]
 gi|133776484|gb|EBA40304.1| Hypothetical protein COLAER_00829 [Collinsella aerofaciens ATCC
           25986]
          Length = 775

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 93/257 (36%), Gaps = 67/257 (26%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + + G+ N GK++LFN +   +   V + PG T +     L L    V I+D  GI  
Sbjct: 6   IHVALAGNPNCGKTTLFNLITGAN-GYVGNWPGVTVEKKEAKL-LSDKNVTITDLPGIYS 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                 +E   R +L     D+++ + +  + +             +  +     +DL  
Sbjct: 64  LSPYSPEEQCSRDYLMSGEPDVVVQVVDATNLERNLYLALQVIETGLPVVVALNMADLVE 123

Query: 334 TYTEEYD------------HLISSFTGEGLEELINK-------------------IKSIL 362
              ++ D             +IS+   +G++EL  +                   I+ +L
Sbjct: 124 KNGDKIDTDKLSKKLGCPVMMISALKNKGIKELFEQVKKSAASKGQVPEHKFDSSIEDVL 183

Query: 363 SNKFKKLPFSIPSHKRHLYHL-----------------SQTVRYLEMASLNEKDCGLDII 405
            +    LP S+P++KR  Y +                  +  R  E+ +  E+DC  D  
Sbjct: 184 DHIENNLPASVPANKRRYYAVKLFERDADACKLINLTKEKAARVEELVAQCEQDCDDD-- 241

Query: 406 AENLRLASVSLGKITGC 422
           AE++         ITG 
Sbjct: 242 AESI---------ITGE 249


>gi|91794552|ref|YP_564203.1| GTP-binding protein, HSR1-related [Shewanella denitrificans OS217]
 gi|91716554|gb|ABE56480.1| GTP-binding protein, HSR1-related [Shewanella denitrificans OS217]
          Length = 435

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 91/252 (36%), Gaps = 26/252 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMSTRLIRGWTH-LERQKGGIGMRGPGETQLETDRRLLRGRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I    + +     Q +      +   + ++G++NAGKS+LFN L   DV    D    T
Sbjct: 173 NINRRLDKVDKQREQSRRSRKRSDLATVSLVGYTNAGKSTLFNGLTSSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------ 308
            D     LDL    V ++DT G             K T  E   A+L+L + +       
Sbjct: 232 LDPTLRKLDLPDGAVILADTVGFIRHLPHDLVAAFKATLQETRQAELLLHIVDCADDNMQ 291

Query: 309 -------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLE 352
                  +  KEI     I  + +  K DL   +    D+          +S+  G+G +
Sbjct: 292 DNFDQVQDVLKEID-ADEIPQLVVCNKIDLLEDFAPRIDYAEDGTPERVWLSAQKGQGFD 350

Query: 353 ELINKIKSILSN 364
            L+  I  ++ N
Sbjct: 351 LLLQAITELVGN 362


>gi|295396069|ref|ZP_06806252.1| GTP-binding protein Era [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971010|gb|EFG46902.1| GTP-binding protein Era [Brevibacterium mcbrellneri ATCC 49030]
          Length = 311

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 11/124 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+    +G  N GKS+L NAL    VAI ++ P TTR  +   +  + + + + DT G
Sbjct: 12  RAGF-ACFVGRPNTGKSTLTNALVGTKVAITSNKPQTTRHTIRGVVHRDNHQLIVVDTPG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIG 326
           +     ++           +   D+I      N K          +     +    + I 
Sbjct: 71  LHRPRTLLGSRLNDLVASTLAEVDVIGFCLPANEKIGPGDRYIAEQLEMIARKTPVVAIV 130

Query: 327 TKSD 330
           TK+D
Sbjct: 131 TKTD 134


>gi|291549625|emb|CBL25887.1| ferrous iron transporter FeoB [Ruminococcus torques L2-14]
          Length = 679

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 85/248 (34%), Gaps = 47/248 (18%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +     I  +G+ N GK++LFNA    ++  V + PG T + +   +      +++ D  
Sbjct: 1   MSENLTIGFIGNPNCGKTTLFNAYTGANLK-VANWPGVTVEKVEGAIKDHDLNIRLVDLP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKS 329
           G         +E + R F+  +  D+I+ + + ++ +                +      
Sbjct: 60  GTYSLTSYTMEEQVSRQFILSDEVDVIIDVADASALERNLYLTLQLLELGKPVVLALNMM 119

Query: 330 DLYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH- 376
           D+      E D              +S+    GL+ L   + +   +K  K P  +  H 
Sbjct: 120 DIVEKRGMEIDTHRLPELLGIPVIPVSARKRTGLDVL---LHAAAHHKDCKDPECLIHHH 176

Query: 377 -----KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL-----------ASVSLG--- 417
                 RH +H    + Y +          +D+I E L+            A   L    
Sbjct: 177 KYISKHRHNHHAEYAMVYSDNIEDK-----IDLIIEELKRKYPDLTNYRWHAIKLLEQDQ 231

Query: 418 KITGCVDV 425
           +IT    V
Sbjct: 232 EITKRYSV 239


>gi|192361241|ref|YP_001983532.1| hypothetical protein CJA_3078 [Cellvibrio japonicus Ueda107]
 gi|190687406|gb|ACE85084.1| hypothetical protein CJA_3078 [Cellvibrio japonicus Ueda107]
          Length = 445

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 111/310 (35%), Gaps = 35/310 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + + N
Sbjct: 115 RARTFEGKLQVELAQLRHTATRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRN 170

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +++ +    SQ + G   R       + ++G++NAGKS+LFN +   +V    +  
Sbjct: 171 RITQIESRLEKVRSQREQGRRSRQRAAIPTVSLVGYTNAGKSTLFNLITGAEV-YAENQL 229

Query: 252 GTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     ++L     V ++DT G          E  + T  E  N+ L+L + +  +
Sbjct: 230 FATLDPTMRRIELADIGAVVLADTVGFISHLPHRLVEAFRATLEEASNSSLLLHVIDSAA 289

Query: 311 KKEISFPKNIDFIF------------IGTKSDLYSTYTEEYD---------HLISSFTGE 349
           ++ +   + +D +             +  K DL    + + D           +S+ TG 
Sbjct: 290 EERLRNIEQVDLVLEEIGAADLPQLRVYNKLDLLEGASPQIDRDDSGKPIAVWLSAQTGV 349

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           GL+ L   I  +L          +   +  L  +  + + +      +       +   +
Sbjct: 350 GLDLLAQAISELLGKGIVAGSLVLEPQQGRLRAMLYSQQAVIDEHYRDDGN----LEIYI 405

Query: 410 RLASVSLGKI 419
           RL    L +I
Sbjct: 406 RLPKDDLLRI 415


>gi|291526082|emb|CBK91669.1| GTP-binding protein HflX [Eubacterium rectale DSM 17629]
          Length = 415

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +V      + +  +     ++  H    +          + I+G++NAGKS+L N L + 
Sbjct: 165 EVDRRLINDRIAQLRRELKEVQKHRDITRAKREKNKVPVVAIVGYTNAGKSTLLNHLTEA 224

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV +  D    T D  T  L L+G   V ++DT G          E  K T  E + AD+
Sbjct: 225 DV-LEEDKLFATLDPTTRILALDGKQQVLLTDTVGFIRKLPHHLIEAFKSTLEEAKYADI 283

Query: 302 ILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYS------TYTEEYDHLI 343
           I  + + ++ +                 K+  F+ +  K D  +       +  +Y   I
Sbjct: 284 IFHVVDASNMQREKQMFITYQTLDDLGVKDKKFVTLFNKQDARTDNEPLHDFRADYTLNI 343

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ------TVRYLEMASLNE 397
           S+    GL+E+ + ++ IL      +   IP  K  +  L +      +  Y+      +
Sbjct: 344 SAAKDLGLDEVKSLLEEILRENKVYIERIIPYDKAGVIQLIRKQGELVSEEYVADGIQIK 403

Query: 398 KDCGLDI 404
               +++
Sbjct: 404 AYVPMEV 410


>gi|255534186|ref|YP_003094557.1| GTP-binding protein HflX [Flavobacteriaceae bacterium 3519-10]
 gi|255340382|gb|ACU06495.1| GTP-binding protein HflX [Flavobacteriaceae bacterium 3519-10]
          Length = 403

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 16/191 (8%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L  +    I +    +    G   +  ++G++N GKS+L NA++
Sbjct: 161 ETEIETDRRIIRDRISLLKEKLKTIDRQMATQRNNRGKVVRAALVGYTNVGKSTLMNAIS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K DV    +    T D     + +      ++DT G          E  K T  EV  AD
Sbjct: 221 KSDV-FAENKLFATLDTTVRKVVIGNLPFLLTDTVGFIRKLPTQLVESFKSTLDEVREAD 279

Query: 301 LILLLKE---------INSKKEISFPKN---IDFIFIGTKSDLYS-TYTEEYDHLISSFT 347
           L++ + +         I+S  +I    N      I +  K D +S    +E+D    S  
Sbjct: 280 LLIHVVDISHESFEDHIDSVNQILMEINAHQKPMIMVFNKIDDFSYEKKDEFDLTPESRK 339

Query: 348 GEGLEELINKI 358
              L E  N  
Sbjct: 340 NIPLAEWQNTW 350


>gi|229098168|ref|ZP_04229116.1| hypothetical protein bcere0020_34020 [Bacillus cereus Rock3-29]
 gi|229117186|ref|ZP_04246565.1| hypothetical protein bcere0017_34660 [Bacillus cereus Rock1-3]
 gi|228666354|gb|EEL21817.1| hypothetical protein bcere0017_34660 [Bacillus cereus Rock1-3]
 gi|228685359|gb|EEL39289.1| hypothetical protein bcere0020_34020 [Bacillus cereus Rock3-29]
          Length = 424

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 103/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKKLLSELEINHIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F    L  +   I++ +  +       IP  +
Sbjct: 319 DALHQNFIPFPKSDFLMTSAFEEIDLLHIKEAIETKMKEEMDPYQVEIPPSE 370


>gi|28198002|ref|NP_778316.1| GTP-binding protein [Xylella fastidiosa Temecula1]
 gi|182680628|ref|YP_001828788.1| GTP-binding proten HflX [Xylella fastidiosa M23]
 gi|28056062|gb|AAO27965.1| GTP-binding protein [Xylella fastidiosa Temecula1]
 gi|182630738|gb|ACB91514.1| GTP-binding proten HflX [Xylella fastidiosa M23]
 gi|307579087|gb|ADN63056.1| GTP-binding proten HflX [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 450

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 29/306 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           +   E + ++ +  +    + L   W          I        + +      ++ +  
Sbjct: 115 ACSHEGKLQVELAQLRHLATRLVRGWTHLERQRGGAIGLRGPGETQLETDRRLLQKRVEQ 174

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +    + +    +Q +   +     +I ++G++N+GKS+LFNAL     A   +    T 
Sbjct: 175 LQKRLSKVEVQRTQMRRARVRSEVPRIALVGYTNSGKSTLFNALTGAS-AYTANQLFATL 233

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           D     + L G    ++DT G             + T  E   ADL+L + +        
Sbjct: 234 DPKVRRIVLPGSSAMLADTVGFVRHLPHELVAAFRSTLSEAREADLLLHVIDAADPLREE 293

Query: 316 FPKNIDFI------------FIGTKSDLYSTYTEEYD-------------HLISSFTGEG 350
               +D +             +  K D         D               +S+  G G
Sbjct: 294 RIDQVDEVLQAIGAGELPQLLVFNKIDCIEGAEVRQDAQDGIPDQARRERVWLSARHGHG 353

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DI-IAE 407
           +E L   +   L  +  +    +P  +  L      ++ +     +E    L  D+ +AE
Sbjct: 354 VELLQQILNHRLKIQNVQSELRLPPSEGRLRARLHELKGVREEQTDEHGWLLKIDLSLAE 413

Query: 408 NLRLAS 413
             RLA+
Sbjct: 414 IERLAA 419


>gi|229104263|ref|ZP_04234934.1| hypothetical protein bcere0019_34110 [Bacillus cereus Rock3-28]
 gi|228679159|gb|EEL33365.1| hypothetical protein bcere0019_34110 [Bacillus cereus Rock3-28]
          Length = 424

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 103/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKKLLSELEIHHIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F    L  +   I++ +  +       IP  +
Sbjct: 319 DALHQNFIPFPKSDFLMTSAFEESDLLHIKEAIETKMKEEMDPYQVEIPPSE 370


>gi|159905414|ref|YP_001549076.1| small GTP-binding protein [Methanococcus maripaludis C6]
 gi|159886907|gb|ABX01844.1| small GTP-binding protein [Methanococcus maripaludis C6]
          Length = 184

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 80/177 (45%), Gaps = 34/177 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI----------DLDLEGYLV 269
           +KI ++G  N+GKSS+ N++  K+++ V+++ GTT+  +             ++ +   +
Sbjct: 6   FKIALVGPENSGKSSIVNSIFGKNISEVSEVGGTTKMPVKKFWGKIKIGKQKINPDFAKI 65

Query: 270 KISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------- 318
              D  G+   ++   ++    +++T+ E++++DLI+ + + ++    SF K        
Sbjct: 66  TFVDLGGLYAGENRSVVMVGSVLEKTYAEIDDSDLIIHIIDGSTDLFKSFEKLHHLLKFR 125

Query: 319 -NIDFIFIGTKSDLYSTYTEE------------YDHLISSFTGEGLEELINKIKSIL 362
                I +  K DL      E                 SS T EG+ EL++ I  IL
Sbjct: 126 YRKPIIVVINKCDLIENSKREDLRKYVEGRLENKVFFTSSTTYEGIGELLSTIIEIL 182


>gi|120597493|ref|YP_962067.1| GTP-binding protein, HSR1-related [Shewanella sp. W3-18-1]
 gi|146294366|ref|YP_001184790.1| GTP-binding protein, HSR1-related [Shewanella putrefaciens CN-32]
 gi|120557586|gb|ABM23513.1| GTP-binding protein, HSR1-related [Shewanella sp. W3-18-1]
 gi|145566056|gb|ABP76991.1| GTP-binding protein, HSR1-related [Shewanella putrefaciens CN-32]
          Length = 435

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 112/313 (35%), Gaps = 34/313 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I      +     Q +          + ++G++NAGKS+LFNAL   DV    D    T
Sbjct: 173 NINKRLERVDKQREQSRRARKRSEMPTVSLVGYTNAGKSTLFNALTSSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
            D     LDL    V ++DT G             K T  E   A+L+L + +   +   
Sbjct: 232 LDPTLRKLDLPDGAVILADTVGFIRHLPHDLVAAFKATLQETRQAELLLHIVDCADENMA 291

Query: 312 ----------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLE 352
                     K+I   + +    +  K DL    T   ++          +S+    G +
Sbjct: 292 DNFEQVQSVLKDIEADEVMQL-IVCNKIDLLEDVTPRIEYDDQGKPIRVWVSAQKRLGFD 350

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL--- 409
            L+  I  ++    ++L   IP+   H  +L Q  R   +      D G  I++  L   
Sbjct: 351 LLLKAITELIGEVIRELTLRIPATAGH--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDA 408

Query: 410 ---RLASVSLGKI 419
              RLA  S G++
Sbjct: 409 DWRRLAKQSQGEL 421


>gi|313895890|ref|ZP_07829444.1| ribosome biogenesis GTPase Era [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975315|gb|EFR40776.1| ribosome biogenesis GTPase Era [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 298

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 23/210 (10%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            ++G  N GKS+L NAL  + +AI++D P TTR  +   L  E   V   DT G+ +   
Sbjct: 10  AVIGRPNVGKSTLINALIGQKIAIMSDKPQTTRSRILCILTQEDAQVIFLDTPGVHKPKH 69

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIG--TKSDL--- 331
            +     K T   +   D+++ + +   K        +   + +    +    K DL   
Sbjct: 70  KLGSHMAKATEGALHGVDVVVFVVDATEKMGAGEQYILKQLEKVRVPVLLAVNKIDLLRR 129

Query: 332 ------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                  + Y + YD      IS+   E L  L+++IK  L    +  P  + + +    
Sbjct: 130 EETLPIIAGYAKTYDFAGIVPISARAEENLAGLLDEIKKHLPEGPRYYPEDMVTDQPERL 189

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            +++ VR  E A    +D     +A ++  
Sbjct: 190 IIAELVR--EKALELTRDEIPHAVAVDIEE 217


>gi|297243339|ref|ZP_06927272.1| GTPase [Gardnerella vaginalis AMD]
 gi|296888586|gb|EFH27325.1| GTPase [Gardnerella vaginalis AMD]
          Length = 347

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 76/216 (35%), Gaps = 28/216 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   +  +   + + DT 
Sbjct: 37  YRSGF-VAVVGRPNVGKSTLMNALIGTQIAIASSRPETTRKAIRGIVTTDNAQMVLVDTP 95

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335
           GI     ++ +         + + D I  L   + +           I    +SD     
Sbjct: 96  GIHRPRTLLGQRLNDIVDESLSDVDAIAFLLPADQE----IGPGDRRILSRLRSDFAKK- 150

Query: 336 TEEYDHLISSFTGEGL---------EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
            +E  +        G+          EL+  +  I   +F      +P       ++ + 
Sbjct: 151 -DEKGNWTWKVPLIGIVTKIDTLSRSELVEHLLQI--QQFADFTDIVPVSALERDNVDEV 207

Query: 387 VRYLEM----------ASLNEKDCGLDIIAENLRLA 412
              L            A    ++    +I+E +R A
Sbjct: 208 KNVLIQNLPEGPQMYPADQLSEESPESMISELIRGA 243


>gi|149178557|ref|ZP_01857144.1| GTP-binding protein Hflx [Planctomyces maris DSM 8797]
 gi|148842575|gb|EDL56951.1| GTP-binding protein Hflx [Planctomyces maris DSM 8797]
          Length = 450

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 86/208 (41%), Gaps = 33/208 (15%)

Query: 190 KEVLNDILFLKNDISSHIS------QGKLGEIIRNGYK---IVILGHSNAGKSSLFNALA 240
           ++ L     L +   + +       + +    + N ++   + ++G++NAGKS+L NAL 
Sbjct: 165 EKQLETDRRLLDKRVAELKRKLSEVERRRERTVSNRFQQLTVSLVGYTNAGKSTLMNALT 224

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             DV I   +   T D  T   +L  +  + +SDT G             K T  E   A
Sbjct: 225 GADVYIADQLFA-TLDTRTRRWELPHWGEILLSDTVGFVRDLPHHLVASFKSTLEEARQA 283

Query: 300 DLILLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTE--------E 338
           DL+L + + ++ +             EI   ++ + I +  K+D     ++        +
Sbjct: 284 DLLLHVVDCSNPEVEHHIKTVNKVLDEIEI-EHKNAILVFNKTDKVEDRSKLDVLRLKYD 342

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKF 366
               +S+ +GEGL+ L   +   L++ +
Sbjct: 343 NAISVSAVSGEGLDRLSQAVIDRLASGY 370


>gi|322378788|ref|ZP_08053217.1| GTP-binding protein Era [Helicobacter suis HS1]
 gi|321148818|gb|EFX43289.1| GTP-binding protein Era [Helicobacter suis HS1]
          Length = 311

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 25/167 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGYLVKISDTAG 276
           I ++G  NAGKS+L NAL  + + +++     TR +L   +     D+E   +   DT G
Sbjct: 22  IALIGRPNAGKSTLINALVYERLCLISHKANATRKILKAIVPYMQGDIE-CQMVFLDTPG 80

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSD- 330
           I +   ++ +  IK+    +E+ DL + L  I+   E     ++   N   I    K+D 
Sbjct: 81  ICKPTKLLNQAMIKQIRHALESCDLAIFLASIHDSPEKYQEFLNLAPNKPHILALNKTDT 140

Query: 331 -----------LYSTYTEEYD--HLISSFTGEGLEELINKIKSILSN 364
                       Y  Y+  +     +S+  G  LE L+ ++  +L  
Sbjct: 141 ATPTKILAQIKAYQVYSAHFGALIPLSAAKGHHLEILLEEVAKLLPE 187


>gi|300780720|ref|ZP_07090574.1| GTP-binding protein Era [Corynebacterium genitalium ATCC 33030]
 gi|300532427|gb|EFK53488.1| GTP-binding protein Era [Corynebacterium genitalium ATCC 33030]
          Length = 350

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 2/115 (1%)

Query: 198 FLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             + ++ +  ++     E  R+G+ +  +G  N GKS+L NAL  + +AI+ D P TTR 
Sbjct: 28  AAEAEVDALPNEFTDTPEGFRSGF-VSFVGRPNTGKSTLTNALVGEKIAIMADQPETTRH 86

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            +   ++     + + DT G+     ++ +           + D++ L    N K
Sbjct: 87  PIRGIVNRPDAQIVLVDTPGLHRPRTLLGERLNDVVKDTFADVDVVGLTVPANEK 141


>gi|254509743|ref|ZP_05121810.1| GTP-binding proten HflX [Rhodobacteraceae bacterium KLH11]
 gi|221533454|gb|EEE36442.1| GTP-binding proten HflX [Rhodobacteraceae bacterium KLH11]
          Length = 423

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 28/206 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   ++ L+  +   +    L    R       + ++G++NAGKS+LFN+L   
Sbjct: 166 EADRRAIDEQLVRLRRQLQKVVKTRTLHRAARAKVPYPIVALVGYTNAGKSTLFNSLTGA 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V    D+   T D     ++L +G  V +SDT G             + T  EV  ADL
Sbjct: 226 EVM-AKDMLFATLDPTMRRVELQDGPEVILSDTVGFISNLPTELVAAFRATLEEVLGADL 284

Query: 302 ILLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY--------- 339
           ++ +++I+ +               +    +   + +  K DL      E          
Sbjct: 285 VVHVRDISHEDSEAQAQDVETILASLGVDDDRPRLEVWNKIDLLGAEAREATLARAERDP 344

Query: 340 -DHLISSFTGEGLEELINKIKSILSN 364
               IS+ TGEG+  L+ +I + L  
Sbjct: 345 QVFAISAVTGEGVAPLLTEIATKLQG 370


>gi|206602234|gb|EDZ38716.1| GTP-binding protein (Era) [Leptospirillum sp. Group II '5-way CG']
          Length = 312

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 78/210 (37%), Gaps = 23/210 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            Q       R+G+ + ++G  N+GKS+L NA+  + +A  + +  TTR ++         
Sbjct: 6   EQAPNSAHSRSGF-VSLVGLPNSGKSTLVNAIVGEKIAATSPVAQTTRTLIQGIHTTTRG 64

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPK 318
            +   DT G         +         + +AD+++ +          ++   ++I  P 
Sbjct: 65  QIVFYDTPGFHRLSHAFNQLMGTVAKEALLSADVVVWVVSLDPLPGPQDVEKMRQILLPA 124

Query: 319 --NIDFIFIGTKSDLYST--------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
                 +   TK D   +          E++          GL+E    +   ++  F  
Sbjct: 125 LGGRPLVIAATKMDRAKSQGMIPRLLEIEKWGFPGEIIPVSGLKE--KNLDRFVNLLFDL 182

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           LP   P   R  Y  SQTVR L    + EK
Sbjct: 183 LPAGEPVFDREWYT-SQTVRQLAREYIQEK 211


>gi|209549232|ref|YP_002281149.1| GTP-binding proten HflX [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534988|gb|ACI54923.1| GTP-binding proten HflX [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 441

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 31/225 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + I+ L+ ++   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 166 EADRRMLQDRIIKLERELEQVVRTRQLHRAKRRKVPHPIVALVGYTNAGKSTLFNRITGA 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 226 GV-LAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISDLPTHLVAAFRATLEEVLEADL 284

Query: 302 ILLLKEINSKKEISFPKNIDFIF----------------IGTKSDLYSTYTEE------- 338
           IL +++++     +   ++  I                 +  K D       +       
Sbjct: 285 ILHVRDMSDPDNQAQSSDVMRILGDLGIDEAEAAKRLIEVWNKIDRLEPEVHDTMVQKSA 344

Query: 339 ---YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                  +S+ +GEG++ L+++I   LS    +    +P  K  L
Sbjct: 345 GATNVVAVSAVSGEGVDTLMDEISRRLSGVMTETTVRLPVDKLAL 389


>gi|38234285|ref|NP_940052.1| GTP-binding protein Era [Corynebacterium diphtheriae NCTC 13129]
 gi|81829879|sp|Q6NG20|ERA_CORDI RecName: Full=GTPase Era
 gi|38200548|emb|CAE50243.1| Putative GTP-binding protein [Corynebacterium diphtheriae]
          Length = 305

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 81/219 (36%), Gaps = 25/219 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R+G+ I  +G  N GKS+L NAL  + +AI  + P TTR  +   +  E   + + D
Sbjct: 8   EGFRSGF-ISFVGRPNTGKSTLTNALVGEKIAITANQPETTRHPIRGIVHREDAQIIVVD 66

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFI 323
           T G+ +   ++ +   +       + DLI +    + K                     +
Sbjct: 67  TPGLHKPRTLLGERLNEVVKDTYADMDLIAITVPADEKIGPGDRWILDAVKKVAPKTPLL 126

Query: 324 FIGTKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
            I TK D  S                       +S+ TGE  + L++ I  +L    K  
Sbjct: 127 GIVTKVDKASRDQVAVQLMELHELLGGNSEVVPVSAVTGEQRDVLLDVITRLLPEGPKFY 186

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           P    +       LS+ +R   ++ L ++      +  +
Sbjct: 187 PDDHITDDDTETRLSELIREAALSGLKDELPHSVAVQID 225


>gi|228986795|ref|ZP_04146924.1| hypothetical protein bthur0001_34710 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228772967|gb|EEM21404.1| hypothetical protein bthur0001_34710 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 424

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 104/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQW-------IDKL 165
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q        + + 
Sbjct: 80  NNELTPSQIRNLSAVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKI 222
             +             E       + + + +  +K  ++    H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRVDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFVTLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADSNYVGHEKTVKQLLSELEINHIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F    L  +   I++ +  +  +    IP  +
Sbjct: 319 DELHQNFIPFPKSDFLMTSAFEENDLLHIKEAIETKMKEEMNRYQVEIPPSE 370


>gi|330684968|gb|EGG96644.1| GTP-binding protein HflX [Staphylococcus epidermidis VCU121]
          Length = 413

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 107/289 (37%), Gaps = 21/289 (7%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + +++     ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRAKSREGKLQVELAQLD-YLLPRLQGHGRSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        ++I ++G++NAGKSS FN LA +       +   
Sbjct: 180 NEIKHQLQTVVEHRDRYRSKREQNQVFQIALVGYTNAGKSSWFNVLANETTYEQNQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T  + + EG+ + ISDT G  +          K T  E + ADL+L + + +  +
Sbjct: 239 TLDPKTRQIQINEGFNLIISDTVGFIQKLPTTLVAAFKSTLEEAKGADLLLHVVDASHPE 298

Query: 313 ------------EISFPKNIDFIFIGTKSDLYST-----YTEEYDHLISSFTGEGLEELI 355
                       +      I    I  K D   +      +E+    +SS      +++ 
Sbjct: 299 YRSQYDTVNQLIKQLDMNQIPQSVIFNKKDQCPSNMDLPVSEQPYVFVSSRDESDKDKVK 358

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           N + + + +       ++PS      +  +    +   + NEKD   +I
Sbjct: 359 NLLINQIKHSLTYYEETVPSSDADRLYFLKQHTLVSELNFNEKDESYEI 407


>gi|307594176|ref|YP_003900493.1| GTP-binding proten HflX [Vulcanisaeta distributa DSM 14429]
 gi|307549377|gb|ADN49442.1| GTP-binding proten HflX [Vulcanisaeta distributa DSM 14429]
          Length = 375

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 29/213 (13%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSS 234
           +   E       + ++  +  ++ ++S+   + ++  I R  Y   ++ + G+++AGK++
Sbjct: 145 YGGGEYAIEAYYRYMMRRVAHIRRELSAIKKRREMLVIKRRDYGLPQVALTGYTSAGKTT 204

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           LFN LA++    V   P  T D  +  ++  G    ++DT G  +    +  E    T  
Sbjct: 205 LFNRLARESK-YVDGKPFATLDTYSRLVNFNGLNAILTDTIGFIDDLPPLLIESFYATIA 263

Query: 295 EVENADLILLLKEIN------SKKEISFPK--------NIDFIFIGTKSDLYSTYT---- 336
           EV NADL+L + +I+      S+K +S  K            + +  K DL         
Sbjct: 264 EVLNADLVLFMMDISDDYREFSRKFMSSLKIFNDLGISRTKILPVLNKVDLMDGIDINDK 323

Query: 337 -----EEYDHL--ISSFTGEGLEELINKIKSIL 362
                 E+ +   IS+ TG G+++L + ++S L
Sbjct: 324 IGLVESEFGNYVLISAKTGVGIDDLRDAVRSRL 356


>gi|300774677|ref|ZP_07084540.1| GTP-binding protein HflX [Chryseobacterium gleum ATCC 35910]
 gi|300506492|gb|EFK37627.1| GTP-binding protein HflX [Chryseobacterium gleum ATCC 35910]
          Length = 407

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 16/191 (8%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L  D    I +    +    G   +  ++G++N GKS+L N+++
Sbjct: 161 ETEIETDRRIIRDRITLLKDKLKTIDKQMATQRNNRGKVVRAALVGYTNVGKSTLMNSIS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K +V    +    T D     + +      ++DT G          E  K T  EV  AD
Sbjct: 221 KSEV-FAENKLFATLDTTVRKVVIGNLPFLLTDTVGFIRKLPTQLVESFKSTLDEVREAD 279

Query: 301 LILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYS-TYTEEYDHLISSFT 347
           L++ + +I+ +      +                I +  K D +S    +E D   S+  
Sbjct: 280 LLIHVVDISHESFEDHIESVNHILMEINAHQKPMIMVFNKIDDFSYEKKDEDDLTPSTRK 339

Query: 348 GEGLEELINKI 358
              LEE     
Sbjct: 340 NISLEEWKKTW 350


>gi|225850861|ref|YP_002731095.1| ribosome biogenesis GTP-binding protein YsxC [Persephonella marina
           EX-H1]
 gi|225646661|gb|ACO04847.1| ribosome biogenesis GTP-binding protein YsxC [Persephonella marina
           EX-H1]
          Length = 203

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 38/176 (21%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--------DVLTIDLDLEGYLVKISD 273
           + ++G SN GKSSL NA+ K+++A V+  PG TR        D ++  +DL GY      
Sbjct: 27  VAVVGRSNVGKSSLINAIFKRNIAKVSSSPGKTRLINFFLLNDRISF-VDLPGYGY---- 81

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFI 325
            A + + +    K+ I++ F   EN  L+++L +            KE      I +I +
Sbjct: 82  -AAVSKAERAKWKKMIEKYFQTRENLSLVIMLVDSRHPPTKLDIMMKEWLEDLGIPYIVV 140

Query: 326 GTKSD-------------LYSTYTEEYDHL---ISSFTGEGLEELINKIKSILSNK 365
            TK+D             +  T     D      S+  G G++EL++ +   L+ +
Sbjct: 141 ATKADKLNQSEKARTKKVIRETLGLPKDFPVFLTSAKEGTGIKELMSYVLDFLTEE 196


>gi|70726604|ref|YP_253518.1| hypothetical protein SH1603 [Staphylococcus haemolyticus JCSC1435]
 gi|68447328|dbj|BAE04912.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 412

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 96/253 (37%), Gaps = 16/253 (6%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +  L +S  E + ++ +  +   L          L+ +   I        + ++     +
Sbjct: 118 IFALRASSREGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIR 176

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             +N+I      +  H  + +        ++I ++G++NAGKSS FN L+ ++     D+
Sbjct: 177 TRMNEIKHQLKTVVEHRERYRSKREQNQVFQIALVGYTNAGKSSWFNVLSGEE-TFEKDL 235

Query: 251 PGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D  T  + + EG+ + ISDT G  +          K T  E + ADL+L + + +
Sbjct: 236 LFATLDPKTRQIQINEGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLLHVVDAS 295

Query: 310 SKK------------EISFPKNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELIN 356
             +                   I    I  K D    +  +      S F     EE   
Sbjct: 296 HPEYRSQYDTVNQLINDLDMNQIPQAVIFNKKDQCGDSDDKPLSASPSIFVSSRDEEDKL 355

Query: 357 KIKSILSNKFKKL 369
           K+K++L ++ K  
Sbjct: 356 KVKALLIDQVKST 368


>gi|86606241|ref|YP_475004.1| GTP-binding protein [Synechococcus sp. JA-3-3Ab]
 gi|86554783|gb|ABC99741.1| GTP-binding protein [Synechococcus sp. JA-3-3Ab]
          Length = 588

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 115/337 (34%), Gaps = 34/337 (10%)

Query: 51  RYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANP 110
           R      G++L + L      P S T          G +  +  ++++L     +     
Sbjct: 245 RLVESAGGQVL-QALWQRREGPNSAT------VIGSGKVQELALLVQDLGANLVVFDREL 297

Query: 111 GEFSRRAFEN--GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
                R  E   G   +  +E + D I ++    R   ++    +L  L  +   +   +
Sbjct: 298 TPSQVRTLEEALGVRVVDRSEVILD-IFAQRARTRAGKLQVELAQLQYLLPRLAGRGRTM 356

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVIL 225
                        E       + +   I  L+ ++       +     R G     + ++
Sbjct: 357 SRLGGGIGTRGPGETQLEMERRAIQRRIGKLRQEVEELRRHRQRLRQRREGSQIPVVALV 416

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIV 284
           G++NAGKS+L NAL +  V  V D    T D  T  L+L G   V ++DT G        
Sbjct: 417 GYTNAGKSTLLNALTQAQV-YVADQLFATLDPTTRRLELPGQQAVLLTDTVGFLTELPEQ 475

Query: 285 EKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSD-L 331
             E  + T  EV  AD +L + +++        +                  +  K D L
Sbjct: 476 LVEAFQATLEEVTEADALLHVVDLSHPNWEGHIEAVETLLDEMPLATGPRQLVFNKIDRL 535

Query: 332 YSTYTEEY------DHLISSFTGEGLEELINKIKSIL 362
              + E+          +S+  G+ L++L + +    
Sbjct: 536 DPEWVEDVRLLYPKALFVSAANGQNLDQLRHTLAQFA 572


>gi|16125809|ref|NP_420373.1| GTP-binding protein Era [Caulobacter crescentus CB15]
 gi|13422951|gb|AAK23541.1| GTP-binding protein Era [Caulobacter crescentus CB15]
          Length = 333

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 73/201 (36%), Gaps = 35/201 (17%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  NAGKS+L N +    V+IVT    TTR  +          + + DT GI     
Sbjct: 31  AIIGAPNAGKSTLVNRMVGAKVSIVTQKVQTTRFPVRGVAIEGDTQIVLVDTPGIFSPRR 90

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKK----------------------EISFPKNI 320
            +++  ++  +   E A+  + L ++ ++                       E     + 
Sbjct: 91  RLDRAMVRAAWAGSEEAEATVHLVDVQAELASRADKATPGEYRSAQDVQTIIEGLKAADR 150

Query: 321 DFIFIGTKSD------LYSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFK 367
             I    K D      L +   + +D        +IS+ TG G+E+L  K+ S++     
Sbjct: 151 KVILALNKIDGIKRDTLLAVAKDFFDTGVYSDVFMISASTGAGVEDLTAKLVSMMPEGPW 210

Query: 368 KLPFSIPSHKRHLYHLSQTVR 388
             P    +        ++  R
Sbjct: 211 LYPEDQTADLPARLLAAEITR 231


>gi|88808484|ref|ZP_01123994.1| hypothetical protein WH7805_02302 [Synechococcus sp. WH 7805]
 gi|88787472|gb|EAR18629.1| hypothetical protein WH7805_02302 [Synechococcus sp. WH 7805]
          Length = 531

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 121/290 (41%), Gaps = 33/290 (11%)

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE------ 214
           W+ +    R    AD D  E    +  ++++ L+ +  L   +   +++  L E      
Sbjct: 66  WLKRWKQGRRSQVADSDRPEPPGNRREAARQSLDSVDRLLARLQDDVARRSLQEERERVA 125

Query: 215 --IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VK 270
             + R   ++V+ G  ++GK+SL  AL +  V  V    G+T ++ +  L L+G    V 
Sbjct: 126 QQLERGDLEVVVFGTGSSGKTSLIRALLQDIVGKVGASMGSTNEIRSYRLRLKGLERGVL 185

Query: 271 ISDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLLKEINSK-KEISFPK-----NID 321
           + DT GI E        E++  +R       ADL+L++ + + + +E++  +        
Sbjct: 186 LVDTPGILEGGQDGRTREQQARRRA----SRADLMLVVVDGDLRSQELAVVQSLSGLGKR 241

Query: 322 FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            + +  K DL     E    ++      G     + + +  + +    P      ++ L 
Sbjct: 242 LLLVLNKCDLRGEEEERRLMMLLRERCLGWLAPEDVVGTSAAPQSLPRPG-----QKPLQ 296

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
             ++  + L   ++     G +++A+N+ L   SLG+ TG      LLD 
Sbjct: 297 PPAEVGQLLRRLAVVLHQDGEELLADNILLQCRSLGE-TGRS----LLDR 341


>gi|325928523|ref|ZP_08189711.1| small GTP-binding protein domain/GTP-binding hypothetical protein
           [Xanthomonas perforans 91-118]
 gi|325541062|gb|EGD12616.1| small GTP-binding protein domain/GTP-binding hypothetical protein
           [Xanthomonas perforans 91-118]
          Length = 188

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDD 282
           ++G  N GKS+L NAL    V+IV++ P TTR  L          + + DT G+ RE   
Sbjct: 1   MIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKR 60

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            + +   +     +E  D  +L+ E     E
Sbjct: 61  AMNRVMNRAARGSLEGVDAAVLVIEAGRWDE 91


>gi|257056737|ref|YP_003134569.1| GTP-binding proten HflX [Saccharomonospora viridis DSM 43017]
 gi|256586609|gb|ACU97742.1| GTP-binding proten HflX [Saccharomonospora viridis DSM 43017]
          Length = 482

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 28/222 (12%)

Query: 188 SSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV 244
             + +   I  L+ +I++   I   K G  + N    + ++G++NAGKSS+ NA+    V
Sbjct: 220 DRRRINKRIAKLRREIAAMDTIRATKRGRRMANEVPSVALVGYTNAGKSSILNAVTGAGV 279

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D  T   +  +G +  ++DT G          +  + T  E  +ADL+L
Sbjct: 280 -LVEDALFATLDPTTRRTETPDGRVYTLTDTVGFVRHLPHQLVDAFRSTLDEAADADLLL 338

Query: 304 LLKEINSK-------------KEISFPKNIDFI---FIGTKSDLYSTYTEEY-------D 340
            + +  +               EI+  +         +  K+D+    T           
Sbjct: 339 HVVDGAAAAPEDQVVAVREVLAEIAEKRAEPLPPELVVINKADIADEMTLARLRNLLPDA 398

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
            ++S+ +G+G++ L+++I + L      +   +P  +  L  
Sbjct: 399 VVVSAHSGQGIDTLLSEIAARLPKPETVVDVVVPYTRGELVA 440


>gi|152996644|ref|YP_001341479.1| HSR1-like GTP-binding protein [Marinomonas sp. MWYL1]
 gi|150837568|gb|ABR71544.1| GTP-binding protein HSR1-related [Marinomonas sp. MWYL1]
          Length = 429

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 91/253 (35%), Gaps = 25/253 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +E + 
Sbjct: 115 RARTHEGKLQVELAQLQHMSTRLIRGWTH-LERQKGGIGMRGPGETQLETDRRLLRERIK 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q +      +   + ++G++NAGKS+LFN     DV    D    T
Sbjct: 174 AIQKRLAKVGSQRDQNRRSRDRSSVPTVSLVGYTNAGKSTLFNRATGADV-YAADQLFAT 232

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     LD+E    + ++DT G          +  + T  E   ADL+L + +      
Sbjct: 233 LDPTLRRLDIEQIGSIVLADTVGFIRQLPHRLIKAFQATLKESSEADLLLHIVDAADISR 292

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 ++S  E      +  + I  K DL  T     D           +S+  G+G++
Sbjct: 293 DENMKHVDSVLEEIGANEVPTLTIFNKIDLLPTAEPRIDRDVNGNPFRVWLSARDGQGID 352

Query: 353 ELINKIKSILSNK 365
            L   I  +L+  
Sbjct: 353 LLKQAIAELLAED 365


>gi|238897756|ref|YP_002923435.1| GTPase believed to be involved in coordination of cell cycle,
           energy metabolism, cell division [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465513|gb|ACQ67287.1| GTPase believed to be involved in coordination of cell cycle,
           energy metabolism, cell division [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 315

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 9/131 (6%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            + K  E    G+ I ILG  N GKS+L N L  + ++I +    TTR  +        Y
Sbjct: 6   DEQKKTENTYCGF-ISILGRPNVGKSTLLNQLLGQKISITSSKAQTTRHRIMGIHTQGSY 64

Query: 268 LVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPK----N 319
                DT G+  E    + +   +     + N +LI+ + E        E+   K     
Sbjct: 65  QAIYIDTPGLHIEEKRTINRFMNRAARSAIGNVELIIFMVEGTHWFPDDEMIVNKLRGVT 124

Query: 320 IDFIFIGTKSD 330
              +    K D
Sbjct: 125 CPVLLAVNKID 135


>gi|187250771|ref|YP_001875253.1| GTP-binding protein [Elusimicrobium minutum Pei191]
 gi|226741214|sp|B2KB94|ERA_ELUMP RecName: Full=GTPase Era
 gi|186970931|gb|ACC97916.1| GTP-binding conserved hypothetical protein [Elusimicrobium minutum
           Pei191]
          Length = 300

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 88/221 (39%), Gaps = 30/221 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++G+ ++  G  NAGKS+L NA+A   ++ V+  P  TR  +    + E + +   DT G
Sbjct: 7   KSGFAVM-AGLPNAGKSTLLNAVAGGLLSAVSPKPQMTRQNIIALSEGEKHQIIFVDTPG 65

Query: 277 IRETDDIVEKEGIKRTFLEVEN-ADLILLLKE-----INSKKEISFPKN--IDFIFIGTK 328
             E    +++         +E  AD+ + + +        KK IS  +N       +  K
Sbjct: 66  FLEAKYKLQEIMKGSLSQALEEDADVAVFVFDPLQEYSAHKKLISKLQNIKCPLFVLINK 125

Query: 329 SD-------------LYSTYTE-EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +D             L     + E    IS+   +G+ E    +   L       P    
Sbjct: 126 ADTQPVEKLRKIEEQLKKDLPDIEKTFFISAKQNKGVAEFKTAVAETLPFNPPYFPQGQW 185

Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENL 409
           + +   +++++ +R  ++ +L EK+         +   E+L
Sbjct: 186 TDRWERFYVAEFIRE-QIFNLYEKEVPYCTYVEVETFTEDL 225


>gi|119383172|ref|YP_914228.1| GTP-binding protein Era [Paracoccus denitrificans PD1222]
 gi|119372939|gb|ABL68532.1| GTP-binding protein Era [Paracoccus denitrificans PD1222]
          Length = 303

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 78/205 (38%), Gaps = 24/205 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 5   RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGIAMRGASQIVFVDTPG 63

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNI----DFIFIG 326
           I      +++  +K  +    +AD+ILLL E        ++  I   ++       + + 
Sbjct: 64  IFRPRRRLDRSMVKAAWGGAADADVILLLIEAHRGLTDGTQAIIDNLRDHAGTTPVVLVI 123

Query: 327 TKSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         L       +D     +IS+  G G ++L+  +   +       P   
Sbjct: 124 NKIDRVKSETLLALSQQVNAAFDFTRTFMISAEKGHGCDDLLEWLAGQVPEGPWLYPEDQ 183

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            +        ++  R      L+E+
Sbjct: 184 VADLPMRMIAAEITREKLTLRLHEE 208


>gi|160876996|ref|YP_001556312.1| GTP-binding proten HflX [Shewanella baltica OS195]
 gi|217974859|ref|YP_002359610.1| GTP-binding proten HflX [Shewanella baltica OS223]
 gi|304410916|ref|ZP_07392533.1| GTP-binding proten HflX [Shewanella baltica OS183]
 gi|307304913|ref|ZP_07584663.1| GTP-binding proten HflX [Shewanella baltica BA175]
 gi|160862518|gb|ABX51052.1| GTP-binding proten HflX [Shewanella baltica OS195]
 gi|217499994|gb|ACK48187.1| GTP-binding proten HflX [Shewanella baltica OS223]
 gi|304350813|gb|EFM15214.1| GTP-binding proten HflX [Shewanella baltica OS183]
 gi|306912315|gb|EFN42739.1| GTP-binding proten HflX [Shewanella baltica BA175]
 gi|315269199|gb|ADT96052.1| GTP-binding proten HflX [Shewanella baltica OS678]
          Length = 435

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 64/313 (20%), Positives = 113/313 (36%), Gaps = 34/313 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I      +     Q +      +   + ++G++NAGKS+LFNAL   DV    D    T
Sbjct: 173 NINKRLERVDKQREQSRRARKRSDLSTVSLVGYTNAGKSTLFNALTSSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
            D     LDL    V ++DT G             K T  E   A+L+L + +   +   
Sbjct: 232 LDPTLRKLDLPDGAVILADTVGFIRHLPHDLVAAFKATLQETRQAELLLHIVDCADENMA 291

Query: 312 ----------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLE 352
                     K+I   + +    +  K DL    T   ++          +S+    G +
Sbjct: 292 DNFDQVQSVLKDIEADEVMQL-VVCNKIDLLEDVTPRIEYNDIGKPVRVWVSAQKRLGFD 350

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL--- 409
            L+  I  ++    K+L   IP+   H  +L Q  R   +      D G  I++  L   
Sbjct: 351 LLLKAITELIGEVIKELTLRIPATAGH--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDA 408

Query: 410 ---RLASVSLGKI 419
              RLA  S G++
Sbjct: 409 DWRRLAKQSQGEL 421


>gi|332653415|ref|ZP_08419160.1| GTP-binding protein HflX [Ruminococcaceae bacterium D16]
 gi|332518561|gb|EGJ48164.1| GTP-binding protein HflX [Ruminococcaceae bacterium D16]
          Length = 429

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 104/290 (35%), Gaps = 22/290 (7%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T   R    +      L  L G W   L      I        + +      +  ++
Sbjct: 121 RARTREGRLQVELAQYKYLLPRLIGMWSH-LERQEGAIGTRGPGETQLETDRRHIRRKIS 179

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +     D+    +  +          + I+G++NAGKS+L N L   ++    +    T
Sbjct: 180 KLEEELRDVRRVRATQRQRREKNEVPVVAIVGYTNAGKSTLLNKLTGAEI-PANNRLFDT 238

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D  T  L++     V +SDT G          E  K T  E+  ADL+L + + ++ + 
Sbjct: 239 LDTTTRTLEISDTCTVLLSDTVGFIRKLPHHLVEAFKATLEELSFADLLLHVIDASNPEW 298

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTE---EYDHLISSFTGEGLEELINKI 358
                           +    I +  K D ++       E    IS+ TGEGL++L+  I
Sbjct: 299 REQAQVVDQLILELGAEQTPRIEVFNKCDKWTGEIRPHGEDIVSISAKTGEGLDKLLEAI 358

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
              L +  K++   +P  K  +  L Q  +        E    +D++A  
Sbjct: 359 GKRLDSGAKRVTIHLPYDKGGI--LDQLYQE-AKVEQVEYAETIDVVAVC 405


>gi|300781013|ref|ZP_07090867.1| GTP-binding protein HflX [Corynebacterium genitalium ATCC 33030]
 gi|300532720|gb|EFK53781.1| GTP-binding protein HflX [Corynebacterium genitalium ATCC 33030]
          Length = 505

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 87/223 (39%), Gaps = 32/223 (14%)

Query: 186 NFSSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +  D+  L+ D+S        K  +  R+   KI I G++NAGKSSL NA+   
Sbjct: 241 EADRRRLRTDMAKLRRDLSGMKTARDIKRAQRQRSTLPKIAIAGYTNAGKSSLINAMTDA 300

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +V D    T D  T   +L +G  V ++DT G          E  K T  EV  ADL
Sbjct: 301 GV-LVEDALFATLDPSTRRAELADGRTVVLTDTVGFVRHLPTQLVEAFKSTLEEVVGADL 359

Query: 302 ILLLKEINSKKEISFPKN----------------IDFIFIGTKSDLYSTY---------- 335
           +L + + +    +   K                    I +  K D               
Sbjct: 360 MLHVVDGSDPFPLKQIKAVNDVLAEITRDTGEEIPPEIIVVNKIDEADPVVLAELRHAFA 419

Query: 336 -TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            ++     +S+ TGEG++EL  +I+  L+     +   +P  +
Sbjct: 420 DSKHNVVFVSAVTGEGIDELEGRIEMFLNTLDAHVKLLVPFTR 462


>gi|238063470|ref|ZP_04608179.1| small GTP-binding protein [Micromonospora sp. ATCC 39149]
 gi|237885281|gb|EEP74109.1| small GTP-binding protein [Micromonospora sp. ATCC 39149]
          Length = 507

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 86/233 (36%), Gaps = 34/233 (14%)

Query: 205 SHISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKK----DVAIVTDIPGTTRDVLT 259
             + Q K     RN    + I G++NAGKSSL N L       + A+   +  TTR    
Sbjct: 263 RTVRQTKRARRSRNSVPAVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTTRKAT- 321

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE---------INS 310
                +G +  +SDT G          E  + T  EV  ADL++ + +         + +
Sbjct: 322 ---APDGRIYTLSDTVGFVRHLPHQIVEAFRSTLEEVAEADLVVHVVDGAHPDPEEQVRA 378

Query: 311 KKEISFPKNIDF---IFIGTKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKS 360
            +E+      D    + +  K+D     T              S+ +G GL+E+   I++
Sbjct: 379 VREVLAEVGADRLPELLVINKTDAADEETLLRLKRLWPDAVFASARSGRGLDEVRAAIEA 438

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQ------TVRYLEMASLNEKDCGLDIIAE 407
            L     ++   +P  +  L           +  +L   +L     G  + AE
Sbjct: 439 RLPRPAVEVRAVLPYDRGDLVARVHRQGEVLSTAHLPEGTLLHVRVGEALAAE 491


>gi|256052439|ref|XP_002569777.1| GTP-binding protein era [Schistosoma mansoni]
 gi|227284494|emb|CAY17142.1| GTP-binding protein era, putative [Schistosoma mansoni]
          Length = 446

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 4/183 (2%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           + + + Q  L        K+ ++G  N+GKSSL N L K  V  V+    TTR   T   
Sbjct: 55  LENLLLQQPLSSPDARVLKVAVIGCPNSGKSSLVNMLTKWKVCAVSGKAHTTRSKQTATY 114

Query: 263 DLEGYLVKISDTAGI---RETDDIV-EKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
             +   +   D  G+    +      EK  I+     + ++DLIL++ +++ K+      
Sbjct: 115 FQDNVQLAFVDLPGLVGRSKASRFKLEKTFIRDPHSAIFDSDLILVVIDVSHKESREVLH 174

Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                 +   +D  S       + I     + ++ ++  +K  L  +            R
Sbjct: 175 EEIVKALHFFNDKESVLVLNKVNKIFPHDSDHIDSMLETLKQQLLLQTASPEEVCNRRNR 234

Query: 379 HLY 381
            L 
Sbjct: 235 WLE 237


>gi|256396152|ref|YP_003117716.1| GTP-binding protein Era [Catenulispora acidiphila DSM 44928]
 gi|256362378|gb|ACU75875.1| GTP-binding protein Era [Catenulispora acidiphila DSM 44928]
          Length = 375

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 10/133 (7%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +  E  R G+    +G  NAGKS+L N++    VAI +  P TTR  +   +  +   + 
Sbjct: 69  EFPEDFRAGF-ACFVGRPNAGKSTLTNSVVGAKVAITSGRPQTTRHTVRGIVHRDDAQLV 127

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNID 321
           + DT G+ +   ++               D+I      + K          E++  +   
Sbjct: 128 LVDTPGLHKPRTLLGARLNDEVRATWNEVDVIGFCVPADEKIGPGDRFIAAELAQVRRTP 187

Query: 322 FIFIGTKSDLYST 334
            I I TK+D  + 
Sbjct: 188 KIAILTKTDKAAK 200


>gi|326572024|gb|EGE22026.1| GTP-binding protein Era [Moraxella catarrhalis BC8]
          Length = 331

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 92/241 (38%), Gaps = 41/241 (17%)

Query: 200 KNDISSHIS--QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           ++ IS+          E  R G+ + I+G  N GKS+L N +  + ++I +  P TTR  
Sbjct: 11  EDTISAFFENRSTPKNESFRAGF-VAIVGRPNVGKSTLMNHMLGQKLSITSRKPQTTRHR 69

Query: 258 LTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVE--------------NADLI 302
           +   L  E   +   DT GI   +   + +   K     +                 D +
Sbjct: 70  IHGILTDEDRQIVFVDTPGIHGKEVRAINERMNKAAISALADVDVVLFVVDGIQWREDDL 129

Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSD----------LYSTYTEEYDH----LISSFTG 348
           L L+++++        N+  I +  K+D          +  +++E +D      +S+   
Sbjct: 130 LTLEKLSAT-------NLPVILVINKADTVKDKSKLLPVIESFSESFDFADIIPVSALRR 182

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI-IAE 407
             L+ L + I   L  +         + +   +  S+ +R  ++  ++  +   D+ +  
Sbjct: 183 HNLDRLQSVIGEYLPIRPAIFDAEQITDRSERFLASEIIRE-KIMRISGDEVPYDLTVQI 241

Query: 408 N 408
           +
Sbjct: 242 D 242


>gi|301025019|ref|ZP_07188619.1| small GTP-binding protein [Escherichia coli MS 69-1]
 gi|300396258|gb|EFJ79796.1| small GTP-binding protein [Escherichia coli MS 69-1]
          Length = 290

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   GY + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGYSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILQCGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHR 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + +   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWEVDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|226326646|ref|ZP_03802164.1| hypothetical protein PROPEN_00496 [Proteus penneri ATCC 35198]
 gi|225204867|gb|EEG87221.1| hypothetical protein PROPEN_00496 [Proteus penneri ATCC 35198]
          Length = 428

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 115/359 (32%), Gaps = 58/359 (16%)

Query: 70  PSPESFTGEDSAE--------------FHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115
           P P+ + GE  AE                 H         LE L +    R+ +      
Sbjct: 52  PHPKYYVGEGKAEEIAEAVKASGADVVLFNHALTPAQERNLERLCE---CRVVDRTGVIL 108

Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
             F   +    E +              ++ +  +    + L   W   L   +  I   
Sbjct: 109 DIFFAQRARTHEGK-------------LQVELAQLRHLSTRLVRGWTH-LERQKGGIGLR 154

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
                + +      +  ++ IL     +     QG+      +   + ++G++NAGKSSL
Sbjct: 155 GPGETQLETDRRLLRGKISQILMRLGRVERQREQGRQARSKADIPTLSLVGYTNAGKSSL 214

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFL 294
           FN +   DV    D    T D     + +E    V ++DT G             K T  
Sbjct: 215 FNHITCSDV-YAADQLFATLDPTLRRIQVEDVGTVVLADTVGFIRHLPHDLVAAFKATLQ 273

Query: 295 EVENADLILLLKE------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-- 340
           E   A L+L + +            + S  E    + I  + +  K DL   +T   D  
Sbjct: 274 ETREATLLLHVIDAADSRFEENIHAVESVLEEIDAQEIPTLHVMNKIDLLEDFTPRIDRN 333

Query: 341 -------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS----HKRHLYHLSQTVR 388
                    +S+ TGEG+  L   +   LS +       +P       R  ++  Q++ 
Sbjct: 334 EENLPVRVWVSAQTGEGIPLLYQALTERLSGEIAHFELRLPPEDTGRLRSRFYQLQSIE 392


>gi|229075612|ref|ZP_04208599.1| hypothetical protein bcere0024_34220 [Bacillus cereus Rock4-18]
 gi|228707591|gb|EEL59777.1| hypothetical protein bcere0024_34220 [Bacillus cereus Rock4-18]
          Length = 424

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 103/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKKLLSELEINHIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F    L  +   I++ +  +       IP  +
Sbjct: 319 DTLHQNFIPFPKSDFLMTSAFEESDLLHIKEAIETKMKEEMDPYQVEIPPSE 370


>gi|150004409|ref|YP_001299153.1| putative GTP-binding protein [Bacteroides vulgatus ATCC 8482]
 gi|254882866|ref|ZP_05255576.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294775484|ref|ZP_06740996.1| GTP-binding protein HflX [Bacteroides vulgatus PC510]
 gi|319643373|ref|ZP_07997999.1| hypothetical protein HMPREF9011_03600 [Bacteroides sp. 3_1_40A]
 gi|149932833|gb|ABR39531.1| putative GTP-binding protein [Bacteroides vulgatus ATCC 8482]
 gi|254835659|gb|EET15968.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294450629|gb|EFG19117.1| GTP-binding protein HflX [Bacteroides vulgatus PC510]
 gi|317385002|gb|EFV65955.1| hypothetical protein HMPREF9011_03600 [Bacteroides sp. 3_1_40A]
          Length = 417

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 15/195 (7%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q       R    ++ ++G++N GKS+L N L+K +V
Sbjct: 181 EMDRRIILNRMSLLKERLAEIDKQKSTQRKNRGRMIRVALVGYTNVGKSTLMNLLSKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + +E     ++DT G          +  K T  EV  ADL++ 
Sbjct: 241 -FAENKLFATLDTTVRKVIIENLPFLLTDTVGFIRKLPTDLVDSFKSTLDEVREADLLIH 299

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGL 351
           + +I+    +++IS                + +  K D Y+   + E D    +     L
Sbjct: 300 VVDISHPDFEEQISVVDKTIADLGAGGKPTMIVFNKIDAYTYIEKAEDDLTPKTRENITL 359

Query: 352 EELINKIKSILSNKF 366
           EEL+    + L++  
Sbjct: 360 EELMKTWMAKLNDNC 374


>gi|83814057|ref|YP_446511.1| GTPase [Salinibacter ruber DSM 13855]
 gi|83755451|gb|ABC43564.1| GTPase of unknown function subfamily, putative [Salinibacter ruber
           DSM 13855]
          Length = 427

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 87/248 (35%), Gaps = 31/248 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI-VILGHSNAGKSSLFNALAKKDV 244
               + +   +  L+  +     Q       R GY    ++G++NAGKS+L NALA +D+
Sbjct: 139 EMDRRIIDKRMAKLREKLDEIDRQRTTQRKGREGYTTASLVGYTNAGKSTLLNALADEDL 198

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D  T  ++L+    V +SDT G          E  + T  EV  +D+++
Sbjct: 199 -EAEDRLFATLDATTRTVELDSNKEVLMSDTVGFIRKLPHRLIESFRSTLDEVRESDVLI 257

Query: 304 LLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD--------HLI 343
            + ++                     ++   + +  K D     T               
Sbjct: 258 HVVDVTHPNYEEQMRVVAETLGELEARDKPTLVVFNKIDAMEDRTLLRRLRRNHPDAVFA 317

Query: 344 SSFTGEGLEELINKIKSILSNKFKK--------LPFSIPSHKRHLYHLSQTVRYLEMASL 395
           S+  G GLE L   +  ++   + +         P  I    R    + ++  Y E   L
Sbjct: 318 SALRGIGLETLKEDLLDLIEQDYVERVAYIPVSEPEVIAQVHRLGDVIEESYEYAENGGL 377

Query: 396 NEKDCGLD 403
              +  ++
Sbjct: 378 ESLNGEVE 385


>gi|86148233|ref|ZP_01066530.1| GTP-binding protein HflX [Vibrio sp. MED222]
 gi|218708324|ref|YP_002415945.1| putative GTPase HflX [Vibrio splendidus LGP32]
 gi|85834003|gb|EAQ52164.1| GTP-binding protein HflX [Vibrio sp. MED222]
 gi|218321343|emb|CAV17293.1| GTP-binding protein HflX [Vibrio splendidus LGP32]
          Length = 435

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 107/305 (35%), Gaps = 36/305 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + + +
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRD 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   ++    Q + G   RN      I ++G++NAGKS+LFN +    V    D  
Sbjct: 170 RIKAILRRLAKVAKQREQGRRARNRAEIPTISLVGYTNAGKSTLFNRITSAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     +DL       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKIDLADVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASD 288

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGE 349
            +            E      +  + +  K D         +           +S+  GE
Sbjct: 289 DRFRENIQAVHEVLEEIDAHEVPTLVVMNKIDCMEDQKPRIERDEEGAPRAVWVSAMEGE 348

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS-HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           G+E L   +   L+++  +    IP  H+  +  L   ++ ++    +E    L     +
Sbjct: 349 GIELLFEALTERLASQMVQFRLCIPHQHQGRIRSLFFEMKCIQQEEYDENGNLL----ID 404

Query: 409 LRLAS 413
           +R+  
Sbjct: 405 IRMQQ 409


>gi|99081196|ref|YP_613350.1| GTP-binding protein, HSR1-related [Ruegeria sp. TM1040]
 gi|99037476|gb|ABF64088.1| GTP-binding protein HSR1-related [Ruegeria sp. TM1040]
          Length = 423

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 81/206 (39%), Gaps = 28/206 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   ++ L+  +   +    L    R       + ++G++NAGKS+LFN L   
Sbjct: 166 EADRRAIDEQLVRLRRQLDKVVKTRTLHRAARAKVPYPIVALVGYTNAGKSTLFNRLTGA 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V    D+   T D     ++L +G  V +SDT G             + T  EV  AD+
Sbjct: 226 EVM-AKDMLFATLDPTMRRVELPDGPEVILSDTVGFISDLPTELVASFRATLEEVLAADV 284

Query: 302 ILLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEYD-------- 340
           IL +++I+                 +   ++   I +  K D  S    +          
Sbjct: 285 ILHVRDISHSDTEHQAEDVEQILSSLGVDEDRTVIEVWNKIDQLSEEEADACRQRADRND 344

Query: 341 --HLISSFTGEGLEELINKIKSILSN 364
             + IS+ TGEGL +L++ I   L  
Sbjct: 345 SLYAISAITGEGLPQLLHDIAMKLQG 370


>gi|70931024|ref|XP_737292.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56512559|emb|CAH85924.1| hypothetical protein PC301755.00.0 [Plasmodium chabaudi chabaudi]
          Length = 113

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            ++   NKIK  LS+  K +       +RH  +L +++ +L     N      DIIAE +
Sbjct: 25  NIDVEKNKIKKNLSSDNKNI--YFLPFERHKIYLKESLTHLSFVQKNINLVDFDIIAEEI 82

Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           +LA   L +I G +  EQ+L  I   FCIGK
Sbjct: 83  KLAVKPLHEIIGKISNEQILSNILDTFCIGK 113


>gi|27379603|ref|NP_771132.1| GTP-binding protein HFLX [Bradyrhizobium japonicum USDA 110]
 gi|27352755|dbj|BAC49757.1| GTP-binding protein HFLX [Bradyrhizobium japonicum USDA 110]
          Length = 437

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 99/267 (37%), Gaps = 29/267 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E   ++ +  ++ + S L   W         F         + +      +E ++
Sbjct: 118 RAKTKEGSLQVELAHLNYQRSRLVRSWTHLERQRGGFGFMGGPGETQIEADRRLIQERIS 177

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +      + +     + G        + ++G++NAGKS+LFN L + DV     +  T 
Sbjct: 178 KLEGELKKVQATRRLHRAGRQRVPYRVVALVGYTNAGKSTLFNRLTRADVQAADMLFATL 237

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
              L       G    +SDT G             + T  EV  AD+IL +++I+ +   
Sbjct: 238 DPTLRALTLPHGGKAMLSDTVGFISNLPTQLIAAFRATLEEVLEADVILHVRDISHEDAE 297

Query: 315 SFPKNIDFIF---------------IGTKSDLYSTYTEE----------YDHL---ISSF 346
           +   ++D +                +  K D Y     E           DH    +S+ 
Sbjct: 298 AQQSDVDAVLRQLGINPDDSGRIIEVWNKIDRYDAEQREELLNIAARRPEDHPAMLVSAV 357

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSI 373
           +GEG++ L+  I+  L+ K   L  SI
Sbjct: 358 SGEGVDALLAAIEERLAAKRTTLDLSI 384


>gi|154248312|ref|YP_001419270.1| small GTP-binding protein [Xanthobacter autotrophicus Py2]
 gi|154162397|gb|ABS69613.1| small GTP-binding protein [Xanthobacter autotrophicus Py2]
          Length = 457

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 101/272 (37%), Gaps = 36/272 (13%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + T E   ++ +  ++ + S L   W   L   R          E +       + + 
Sbjct: 137 MRARTKEGALQVELAHLNYQRSRLVRSWTH-LERQRGGFGFLGGPGETQI--EADRRLIG 193

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             I+ ++ ++        L    R       + ++G++NAGKS+LFN L + +V    D+
Sbjct: 194 ERIVRIEKELEQVKRTRGLHRASRKRVPYPIVALVGYTNAGKSTLFNRLTRAEVM-AKDL 252

Query: 251 PGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D     +DL  G  + +SDT G             + T  EV  ADLIL +++I+
Sbjct: 253 LFATLDPTLRAVDLPHGTRIILSDTVGFISELPTQLVAAFRATLEEVLEADLILHVRDIS 312

Query: 310 SKKEISFPKNI---------------DFIFIGTKSDLYSTYTE------------EYDHL 342
                +   ++                 I +  K D  +                E    
Sbjct: 313 HPDTDAQAADVSDVLEDLGVDPQPGGRVIEVWNKIDRLAPDEREQVENRAARGGAEAPVP 372

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +S+ TGEG ++L+  I+  ++     +  ++ 
Sbjct: 373 VSALTGEGTDDLLGLIERRITAGRVTVSVTLA 404


>gi|75907766|ref|YP_322062.1| small GTP-binding protein domain-containing protein [Anabaena
           variabilis ATCC 29413]
 gi|75701491|gb|ABA21167.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC
           29413]
          Length = 517

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 106/258 (41%), Gaps = 38/258 (14%)

Query: 183 DVQNFSSKEVLNDILFLKNDI--SSHISQGKLGE--IIRNGYKIVILGHSNAGKSSLFNA 238
           D  + + + V   +  +++++   + +S+ K  E  + R   ++V+ G  +AGK+SL NA
Sbjct: 91  DAASTTLQAVRQQVSQIQDEVARQALLSRSKEIEANLARGEIQVVVFGTGSAGKTSLVNA 150

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETD-DIVEKEGIKRTFLE 295
           +  + V  V    GTT+   T  L L+G    + I+DT GI E      E+E + R    
Sbjct: 151 IMGRMVGKVDAPMGTTQVGETYCLRLKGLERKILITDTPGILEAGVAGTEREQLARAL-- 208

Query: 296 VENADLILLLKEINSKKEISFPKN------IDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
              ADL+L + + + ++    P           + +  K+DLY              T E
Sbjct: 209 ATEADLLLFVVDNDLRRSEYEPLKSLAEIGKRSLLVLNKTDLY--------------TDE 254

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS---------QTVRYLEMASLNEKDC 400
             E ++ +++  +            +       L            V  L   +   +  
Sbjct: 255 DKEAILARLRQRVLGFIATNDVVAIAANPEAAQLETGEPFQPEPDIVPLLRRMAAILRAE 314

Query: 401 GLDIIAENLRLASVSLGK 418
           G D++A+N+ L S+ LG+
Sbjct: 315 GEDLVADNILLQSLRLGE 332


>gi|191167163|ref|ZP_03028983.1| putative GTPase [Escherichia coli B7A]
 gi|293402935|ref|ZP_06647032.1| yeeP protein [Escherichia coli FVEC1412]
 gi|298378463|ref|ZP_06988347.1| yeeP protein [Escherichia coli FVEC1302]
 gi|312966004|ref|ZP_07780230.1| uncharacterized protein yfjP [Escherichia coli 2362-75]
 gi|190902820|gb|EDV62549.1| putative GTPase [Escherichia coli B7A]
 gi|291429850|gb|EFF02864.1| yeeP protein [Escherichia coli FVEC1412]
 gi|298280797|gb|EFI22298.1| yeeP protein [Escherichia coli FVEC1302]
 gi|312289247|gb|EFR17141.1| uncharacterized protein yfjP [Escherichia coli 2362-75]
 gi|323950630|gb|EGB46508.1| hypothetical protein ERKG_02958 [Escherichia coli H252]
          Length = 290

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|296535545|ref|ZP_06897727.1| GTP-binding protein HflX [Roseomonas cervicalis ATCC 49957]
 gi|296264131|gb|EFH10574.1| GTP-binding protein HflX [Roseomonas cervicalis ATCC 49957]
          Length = 393

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 86/225 (38%), Gaps = 32/225 (14%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNA 238
           E       + +   I+ LK ++        L    R       + ++G++NAGKS+LFNA
Sbjct: 128 ESQIEIDRRLIGERIVKLKRELEQVRRTRGLHRAARTRVPFPVVALVGYTNAGKSTLFNA 187

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           L    V    D    T D     + L  G  V +SDT G          E  + T  EV 
Sbjct: 188 LTGAGV-YAQDQLFATLDPTMRAIRLPSGRTVILSDTVGFISDLPTQLIEAFRATLEEVA 246

Query: 298 NADLILLLKEINSK-------------------KEISFPKNID--FIFIGTKSDLYSTYT 336
            AD+IL ++++                      +  +  +N     I +  K+DL     
Sbjct: 247 AADIILHVRDVAHPDTTAQRNDVVGVLSEMAKGEHPTLDENWPARTIEVLNKADLLGGIA 306

Query: 337 E------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           E           +S+ TGEGL+ L + + + L+   +   +++P 
Sbjct: 307 EVPGLDDAASVAVSALTGEGLDALRSALDARLAAGMEIADYALPP 351


>gi|254168276|ref|ZP_04875122.1| GTPase, putative [Aciduliprofundum boonei T469]
 gi|197622785|gb|EDY35354.1| GTPase, putative [Aciduliprofundum boonei T469]
          Length = 317

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 92/240 (38%), Gaps = 33/240 (13%)

Query: 141 MQRRLSMEGMSGELSSLYGQWI-----DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
                +ME +SG       +       ++    R           ++          + D
Sbjct: 91  ASLVWAMEKISGFADKYARKIKGVGKVEEAIKFRKEFYGRTSSILKQIAPKLRYLGQVRD 150

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I+    DI+  +S             +VI G+ N GKS L   ++     I +  P TT+
Sbjct: 151 IIRKLPDINPELST------------VVIAGYPNVGKSELVAKMSTAKPEIAS-YPFTTK 197

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN-ADLILLLKEINSK--- 311
            ++   ++++G  V+I DT G+ +          K   L ++  AD+I+ L + +     
Sbjct: 198 GIVVGHMEIKGRRVQIVDTPGLLDRPLEKRNRIEKEAILALKYLADVIVFLLDPSETCGY 257

Query: 312 ---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                    KEI     I  + +  K DL    T+     IS+ TGEGL++L+  I + L
Sbjct: 258 SMDEQLKLLKEIKKDFGIPILEVENKVDLLR--TDSPRMKISAKTGEGLDKLVENIVARL 315


>gi|239917258|ref|YP_002956816.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein TIGR00650 [Micrococcus luteus NCTC 2665]
 gi|281414264|ref|ZP_06246006.1| hypothetical protein MlutN2_03508 [Micrococcus luteus NCTC 2665]
 gi|239838465|gb|ACS30262.1| small GTP-binding protein domain/GTP-binding conserved hypothetical
           protein TIGR00650 [Micrococcus luteus NCTC 2665]
          Length = 546

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 19/197 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G++NAGKSSL N L    V +   +  T    +   +  +G    +SDT G     
Sbjct: 324 VAIAGYTNAGKSSLLNRLTHAGVLVENALFATLDPTVRRAMTPDGIGYTLSDTVGFVRNL 383

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPK---------NIDFIFIGTKS 329
                E  + T  EV +AD+IL + + +      +I+  +          I  I +  K+
Sbjct: 384 PTQLVEAFRSTLEEVADADVILHVVDGSHPDPEGQIAAVRSVFAEVDAHRIPEIIVLNKA 443

Query: 330 DLYSTY-------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           D             E +  ++S+ TGEG++EL   I + +     +L   +P  +  L  
Sbjct: 444 DAADPAVVARIRSKEPHAVVVSARTGEGIDELERAIAATIPRPDVRLELLVPFTRGELVS 503

Query: 383 LSQTVRYLEMASLNEKD 399
              +     +A   E+ 
Sbjct: 504 RLHSADAEILAEGYEEG 520


>gi|170782107|ref|YP_001710440.1| GTP-binding protein Era [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156676|emb|CAQ01834.1| Era-like GTP-binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 359

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 80/207 (38%), Gaps = 25/207 (12%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
             R G+ +  +G  N GKS+L NAL  + VAI +  P TTR  +   +      + + DT
Sbjct: 66  AYRAGF-VSFVGRPNVGKSTLTNALVGEKVAITSSKPQTTRKAIRGIVHRPDGQLILVDT 124

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIF 324
            GI     ++ +         + + D+I L    + +          +   +P+      
Sbjct: 125 PGIHRPRTLLGERLNALVQTTLGDVDVIGLCIPADERIGPGDRFINEQLDEYPRARKIAI 184

Query: 325 IGTKSDLYSTYT-----------EEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + TK+D  S +             E+D    +S+     L+ L+ ++   L    +  P 
Sbjct: 185 V-TKTDSASRHAVAEQLLAVQELREWDAIVPVSAVEAIQLDALVGELLKALPVSEQLYPS 243

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEK 398
              + +     +S+ +R   +  + ++
Sbjct: 244 DAVTEEGLEARISELIREAALEGVQDE 270


>gi|145300253|ref|YP_001143094.1| GTP-binding protein HflX [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142853025|gb|ABO91346.1| GTP-binding protein HflX [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 428

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 107/299 (35%), Gaps = 25/299 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +E + 
Sbjct: 114 RARTHEGKLQVELAQLRHLSTRLVRGWTH-LERQKGGIGLRGPGETQMETDRRLLRERIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL   + ++    QG+          + ++G++NAGKS+LFN L    V     +  T 
Sbjct: 173 AILRRLDKVAKQREQGRRARNRNEVPTVSLVGYTNAGKSTLFNQLTAASVYAADQLFATL 232

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------- 307
              L   +  +   V ++DT G             K T  E   ADL+L + +       
Sbjct: 233 DPTLRKLVIRDVGDVILADTVGFIRHLPHDLVAAFKATLQETREADLLLHVVDCADEQMQ 292

Query: 308 --INSKKEISF---PKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEE 353
             I+S +++       +   + I  K D  +      +           +S+ +GEG E 
Sbjct: 293 ENIDSVQQVLAEIEADDRPQLMICNKIDKLANRPAGLERDDEGRPVRLWLSAQSGEGCEY 352

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
           L   +  +L+         +P     L      ++ +E    +E+   +  +   L+LA
Sbjct: 353 LFTALTELLAGSMVHHTLQLPPSAARLRSALYRLKGIEQEGFSEEGDFV--LQVRLQLA 409


>gi|126662689|ref|ZP_01733688.1| GTP-binding protein HflX [Flavobacteria bacterium BAL38]
 gi|126626068|gb|EAZ96757.1| GTP-binding protein HflX [Flavobacteria bacterium BAL38]
          Length = 407

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 16/182 (8%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L  +    I +    +    G   ++ ++G++N GKS+L NA+ 
Sbjct: 161 ETEIETDRRIVRDRISLLKEKIKVIDKQMATQRSNRGAMVRVALVGYTNVGKSTLMNAVG 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K DV  V +    T D       ++     +SDT G          E  K T  EV  AD
Sbjct: 221 KSDV-FVENKLFATLDTTVRKTVIKNLPFLLSDTVGFIRKLPTQLVESFKSTLDEVREAD 279

Query: 301 LILLLKEINSKKEISFP------------KNIDFIFIGTKSDLY-STYTEEYDHLISSFT 347
           L+L + +I+  +                  +   I +  K D Y   Y +E D  I   T
Sbjct: 280 LLLHVVDISHPEFEEHIASVNKILLDIKSADKPTIMVFNKIDAYHPVYFDENDLSIEKTT 339

Query: 348 GE 349
             
Sbjct: 340 KH 341


>gi|30064306|ref|NP_838477.1| hypothetical protein S3193 [Shigella flexneri 2a str. 2457T]
 gi|30042563|gb|AAP18287.1| hypothetical protein S3193 [Shigella flexneri 2a str. 2457T]
 gi|281602339|gb|ADA75323.1| putative GTPase [Shigella flexneri 2002017]
 gi|284924234|emb|CBG37334.1| putative ATP/GTP-binding protein [Escherichia coli 042]
 gi|313648057|gb|EFS12503.1| uncharacterized protein ykfA [Shigella flexneri 2a str. 2457T]
 gi|315614830|gb|EFU95468.1| uncharacterized protein ykfA [Escherichia coli 3431]
 gi|332749827|gb|EGJ80240.1| hypothetical protein SF274771_5129 [Shigella flexneri 2747-71]
 gi|332765421|gb|EGJ95639.1| hypothetical protein SF293071_3503 [Shigella flexneri 2930-71]
          Length = 290

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILQCGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQEQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|14590961|ref|NP_143036.1| GTP-binding protein hflX [Pyrococcus horikoshii OT3]
 gi|3257549|dbj|BAA30232.1| 426aa long hypothetical GTP-binding protein hflX [Pyrococcus
           horikoshii OT3]
          Length = 426

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 18/153 (11%)

Query: 198 FLKNDISSHISQG--KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +K ++    ++   +  +    G+  I + G++NAGKS+L NAL  +D+    +   TT
Sbjct: 164 RIKGELEKIRAEREIRRKKREEEGFVLIALAGYTNAGKSTLLNALTGEDI-EAKNQMFTT 222

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-KE 313
            D  T    ++G ++ ++DT G  +       E    T  E+  AD+I+L+ + +   KE
Sbjct: 223 LDTTTRRFKVKGKMLLVTDTVGFIDGLPPFIVEAFHSTLEEIVKADIIILVLDASEPWKE 282

Query: 314 ISF-------------PKNIDFIFIGTKSDLYS 333
           I                 +   I    K DL S
Sbjct: 283 IRRKLFASLNVLRELKALDRPMIVALNKVDLIS 315


>gi|17231279|ref|NP_487827.1| hypothetical protein all3787 [Nostoc sp. PCC 7120]
 gi|17132921|dbj|BAB75486.1| all3787 [Nostoc sp. PCC 7120]
          Length = 516

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 106/258 (41%), Gaps = 38/258 (14%)

Query: 183 DVQNFSSKEVLNDILFLKNDI--SSHISQGKLGE--IIRNGYKIVILGHSNAGKSSLFNA 238
           D  + + + V   +  +++++   + +S+ K  E  + R   ++V+ G  +AGK+SL NA
Sbjct: 91  DAASSTLQAVRQQVSQIQDEVARQALLSRSKEIEANLARGEIQVVVFGTGSAGKTSLVNA 150

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETD-DIVEKEGIKRTFLE 295
           +  + V  V    GTT+   T  L L+G    + I+DT GI E      E+E + R    
Sbjct: 151 IMGRMVGKVDAPMGTTQVGETYCLRLKGLERKILITDTPGILEAGVAGTEREQLARAL-- 208

Query: 296 VENADLILLLKEINSKKEISFPKN------IDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
              ADL+L + + + ++    P           + +  K+DLY              T E
Sbjct: 209 ATEADLLLFVVDNDLRRSEYEPLKSLAEIGKRSLLVLNKTDLY--------------TDE 254

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS---------QTVRYLEMASLNEKDC 400
             E ++ +++  +            +       L            V  L   +   +  
Sbjct: 255 DKEAILARLRQRVLGFIATNDVVAIAANPEAAQLETGEPFQPEPDIVPLLRRMAAILRAE 314

Query: 401 GLDIIAENLRLASVSLGK 418
           G D++A+N+ L S+ LG+
Sbjct: 315 GEDLVADNILLQSLRLGE 332


>gi|51246230|ref|YP_066114.1| GTP-binding protein [Desulfotalea psychrophila LSv54]
 gi|50877267|emb|CAG37107.1| related to predicted GTP-binding protein [Desulfotalea psychrophila
           LSv54]
          Length = 415

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             + I G +N GKS+  N L  +DVAI +  PGTT DV+   ++L     V + DTAG+ 
Sbjct: 13  LHLGIFGRTNVGKSTFLNFLVDQDVAIASSQPGTTTDVVEKSMELLPLGPVVLHDTAGLD 72

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +   +      ++T       DL++LL + N   EI 
Sbjct: 73  DESALGHLR-TEKTRAVFARVDLLILLIQPNQWGEIE 108


>gi|296166310|ref|ZP_06848747.1| GTP-binding protein Era [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898319|gb|EFG77888.1| GTP-binding protein Era [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 305

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 34/242 (14%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
              R+G+ + ++G  N GKS+L NAL    VAI +  P TTR  +   +  E + + + D
Sbjct: 8   REFRSGF-VCLVGRPNTGKSTLTNALVGTKVAITSTRPQTTRHTIRGIVHRENFQIILVD 66

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFI 323
           T G+     ++ K             D+I L    +            +  S       +
Sbjct: 67  TPGLHRPRTLLGKRLNDLVRDTYGEVDVIGLCIPADEAIGPGDRWIVDQIRSTAPKTTLV 126

Query: 324 FIGTKSDLYST--------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
            I TK D                          +S+ TGE ++ LI+ + + L       
Sbjct: 127 AIVTKIDKVPRDWVAAQLVAVSELVGDSAEIVPVSAATGEQVDVLIDVLAAALPAGPAYY 186

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLL 429
           P    + +     +++ +R   +  + + +    +           + ++    D + L+
Sbjct: 187 PDGELTDEPEEVLMAELIREAALEGVRD-ELPHSLAVV--------IDEVNPREDRDDLI 237

Query: 430 DI 431
           D+
Sbjct: 238 DV 239


>gi|326381616|ref|ZP_08203310.1| GTPase Era [Gordonia neofelifaecis NRRL B-59395]
 gi|326199863|gb|EGD57043.1| GTPase Era [Gordonia neofelifaecis NRRL B-59395]
          Length = 298

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ I  +G  N GKS+L NAL    VAI ++ P TTR  +   ++     + + DT G
Sbjct: 5   RSGF-ICFVGRPNTGKSTLTNALVGDKVAITSNRPQTTRHTIRGIVNRPDAQLILVDTPG 63

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           +     ++ +           + D+I +    + 
Sbjct: 64  LHRPRTLLGQRLNDLVRETYADVDVICVCIPADE 97


>gi|213585347|ref|ZP_03367173.1| GTP-binding protein Era [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 181

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 8/142 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDHLISSFTGEGLEELI 355
              +   HL    +     +++
Sbjct: 131 EKADLLPHLQFLASQMNFLDIV 152


>gi|307105429|gb|EFN53678.1| hypothetical protein CHLNCDRAFT_32043 [Chlorella variabilis]
          Length = 415

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 86/230 (37%), Gaps = 28/230 (12%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             ++ +H    +          + ++G++NAGKS+L N L +  V +  D    T D  T
Sbjct: 139 IEEVRTHRRAYRERRAAAPIPVVALVGYTNAGKSTLLNTLTQAGV-LAEDKLFATLDPTT 197

Query: 260 IDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP- 317
             ++L  G  +  +DT G  +          + T  E+++A L+L + +++     +   
Sbjct: 198 RRVELPGGKALLFTDTVGFIQKLPTQLVAAFRATLEEIKDASLLLHVVDVSHPNAAAQID 257

Query: 318 -----------KNIDFIFIGTKSDLYS--------TYTEEYDHLISSFTGEGLEELINKI 358
                      +N+  + +  K D  +            E    +S  TGEGL E++ ++
Sbjct: 258 AVNGVLAELGVENMPTLNVWNKVDACADPEVVRAVAARREQTVCVSGLTGEGLGEMLERV 317

Query: 359 KSILSNKFKKLPFSIPS------HKRHLYHLSQTVRYLEMASLNEKDCGL 402
            + L +    +   IP        + H   + +   +    +       L
Sbjct: 318 SAKLQDSMVAVHVLIPYAQGELVDEIHRTGVVEAAEFGAAGTEVRAYVPL 367


>gi|85715518|ref|ZP_01046499.1| GTP-binding protein, [Nitrobacter sp. Nb-311A]
 gi|85697713|gb|EAQ35589.1| GTP-binding protein, [Nitrobacter sp. Nb-311A]
          Length = 457

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 100/270 (37%), Gaps = 35/270 (12%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E   ++ +  ++ + S L   W   L   R          E +       + + +
Sbjct: 139 RAKTKEGALQVELAHLNYQRSRLVRSWTH-LERQRGGFGFMGGPGETQI--EADRRLIGD 195

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  L+N++    +  +L    R       + ++G++NAGKS+LFN L + DV     + 
Sbjct: 196 RIARLENELKKVQATRRLHRAGRQRVPYRVVALVGYTNAGKSTLFNRLTRADVQAADMLF 255

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T    L       G    +SDT G             + T  EV  AD+IL +++I+ +
Sbjct: 256 ATLDPTLRSLALPHGGKAMLSDTVGFISNLPTQLVAAFRATLEEVMEADIILHVRDISHE 315

Query: 312 K---------------EISFPKNIDFIFIGTKSDLYS-------------TYTEEYDHLI 343
                            I        + +  K D +                T+    L+
Sbjct: 316 DTEPQQHDVEAVLHQLGIERGGAARILEVWNKIDRFDVDQRKELENIVARRSTDVPCFLV 375

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           S+ TGEG+E L+  I+  L+     L  S+
Sbjct: 376 SAETGEGVETLLAAIEDRLAATRTTLDLSV 405


>gi|266622493|ref|ZP_06115428.1| ferrous iron transport protein B [Clostridium hathewayi DSM 13479]
 gi|288865781|gb|EFC98079.1| ferrous iron transport protein B [Clostridium hathewayi DSM 13479]
          Length = 338

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 36/220 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             +  +G+ N GK++LFNA     +  V + PG T + +  +   +G  +++ DT GI  
Sbjct: 8   INVGFVGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERVEGETSYKGRPIRVIDTPGIYS 66

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                 +E + R  +E    D+I+ + + +S +                I      D+  
Sbjct: 67  LTSYTIEEKVTRKCIEDGEVDVIINVVDASSLERNLYLTLQLLELKKPVILALNMMDIVE 126

Query: 334 TYTEEYDHLI-------------SSFTGEGLEELINKIKS---------------ILSNK 365
               E D                S+    GL+ L++ +                  + NK
Sbjct: 127 DRGMEIDLHRLPEMLGSIPVVPVSARKRTGLDVLMHAVVHHYEEGPQGTVVKYTPRIENK 186

Query: 366 FKKLPFSIPSHKRHLYHLS-QTVRYLEMASLNEKDCGLDI 404
             K+   + +H   + +L    ++++E       D  +D+
Sbjct: 187 ISKVETVLKAHYGDMDNLRWHAIKFMEYDETVWNDHPVDL 226


>gi|159028083|emb|CAO87160.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 774

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 24/191 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           I ++G+ N GK++LFNAL   +     + PG T D       + G  + + D  G+    
Sbjct: 6   IALIGNPNCGKTTLFNALTGANQ-RTGNWPGVTVDRKEGRFQVNGKDITLVDLPGVYSLD 64

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------DFIFIGTKSD- 330
            E  +    E + R +L    ADL++ + + ++ +   +            +      D 
Sbjct: 65  VEEGETGMDELVARDYLLSGEADLVINIVDASNLERNLYLTTQIMEMRLPMLIALNMMDV 124

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L S   +     IS+  GEG+ EL  KI  ++SN        +      
Sbjct: 125 AKTRGIVVNPQLLSVRMDAIVVAISAVKGEGIGELKQKIGELVSN-ISHTAAYVAYPAVI 183

Query: 380 LYHLSQTVRYL 390
              L++ V Y+
Sbjct: 184 EEALNEIVAYI 194


>gi|126737691|ref|ZP_01753421.1| GTP-binding protein HflX [Roseobacter sp. SK209-2-6]
 gi|126721084|gb|EBA17788.1| GTP-binding protein HflX [Roseobacter sp. SK209-2-6]
          Length = 423

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 97/265 (36%), Gaps = 26/265 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ M  +S + + L   W                   + +    +  E L 
Sbjct: 118 RARTREGVLQVEMAALSYQRTRLVRAWTHLERQRGGLGFVGGPGETQIEADRRAIDEQLV 177

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +      ++   +  +          + ++G++NAGKS+LFN L   +V    D+   T
Sbjct: 178 RLRRQLEKVAKTRTLHRAARAKVPYPIVALVGYTNAGKSTLFNRLTGAEVM-AKDMLFAT 236

Query: 255 RDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     ++L +G  + +SDT G             + T  EV  AD+IL +++I+  + 
Sbjct: 237 LDPTMRRVELPDGPEIILSDTVGFISDLPTELVAAFRATLEEVLAADVILHVRDISHDET 296

Query: 314 ISFPKNIDFIF-------------IGTKSDLYSTYTEEYD----------HLISSFTGEG 350
               +++  I              I  K D  S                 H IS+ TGEG
Sbjct: 297 AKQAEDVASILESLGVDDSRAQIEIWNKLDQLSEEEAIARRERAEREEDVHAISALTGEG 356

Query: 351 LEELINKIKSILSNKFKKLPFSIPS 375
           L  L+  I + L     +  F++P 
Sbjct: 357 LPGLLQDIATKLQGVLFEEQFTLPY 381


>gi|332531846|ref|ZP_08407731.1| GTP-binding protein HflX [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038822|gb|EGI75264.1| GTP-binding protein HflX [Pseudoalteromonas haloplanktis ANT/505]
          Length = 429

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 97/291 (33%), Gaps = 27/291 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRARIQ 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I      ++    QG+          + ++G++NAGKS+LFN +   DV    D    T
Sbjct: 173 NIRARLAKVAVQREQGRRARTRNEIPTVSLVGYTNAGKSTLFNRITNSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            D     L+L     V ++DT G             K T  E   ADL L + +      
Sbjct: 232 LDPTLRKLELGDVGSVILADTVGFIRHLPHDLVAAFKATLTETREADLQLHVIDAADSRL 291

Query: 312 -----------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                      KEI     +  + I  K D     +   D           +S+ TGEG 
Sbjct: 292 QENIEQVQSVLKEIE-ADEVPQLLIYNKIDALDNVSPRIDRDDEGQPIRVWLSAQTGEGC 350

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           E L   I  +L+ K       +      L     ++  +     +E+   L
Sbjct: 351 ELLSEAISELLAKKMFNETLFLTPLYGRLRAALFSLNAVHEEQFDEQGNWL 401


>gi|283779176|ref|YP_003369931.1| GTP-binding protein HSR1-like protein [Pirellula staleyi DSM 6068]
 gi|283437629|gb|ADB16071.1| GTP-binding protein HSR1-related protein [Pirellula staleyi DSM
           6068]
          Length = 451

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 19/153 (12%)

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +   L+ +++   +     +  R   +IV+ G  + GKS+L NAL  +DVA V    G T
Sbjct: 33  EKEKLRQELAGLRAMHDKMQCGR--VEIVVFGEISVGKSALINALIGRDVAAVDVRGGWT 90

Query: 255 RDVLTIDLDLEGY--------LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           ++V  +  D  GY         V + DT GI E       E   R     + ADL+L + 
Sbjct: 91  KEVWQVAWDGAGYCLPGLGVSQVVLVDTPGINEVGGSTRGE---RAREAAQRADLLLFVT 147

Query: 307 EIN------SKKEISFPKNIDFIFIGTKSDLYS 333
           + +               +   I + +KSDLYS
Sbjct: 148 DSDFNEVEHDSLSSLVTFHKPIIVVLSKSDLYS 180


>gi|262202148|ref|YP_003273356.1| GTP-binding proten HflX [Gordonia bronchialis DSM 43247]
 gi|262085495|gb|ACY21463.1| GTP-binding proten HflX [Gordonia bronchialis DSM 43247]
          Length = 484

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 73/181 (40%), Gaps = 26/181 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           I + G++NAGKSSL NA+    V +V D    T D  T    L +G  V  +DT G    
Sbjct: 261 ITVAGYTNAGKSSLVNAMTGSGV-LVQDALFATLDPTTRRATLDDGRAVVFTDTVGFVRH 319

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDF---IF 324
                 E  + T  EV +ADL+L + + +                EI   +  D    + 
Sbjct: 320 LPTQLVEAFRSTLEEVVDADLLLHVVDGSDPFPAEQIAAVRRVVNEIVAEEKADAPPEML 379

Query: 325 IGTKSDLYST--------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           +  K D                    +S+ TGEGL EL ++I+  +     +L  ++P  
Sbjct: 380 VINKIDAIDATRLTELRGALGADAVFVSARTGEGLPELFDRIREFVGRSDVELTIAVPFS 439

Query: 377 K 377
           +
Sbjct: 440 R 440


>gi|111225063|ref|YP_715857.1| ATP/GTP-binding protein [Frankia alni ACN14a]
 gi|111152595|emb|CAJ64336.1| ATP/GTP-binding protein [Frankia alni ACN14a]
          Length = 491

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 73/200 (36%), Gaps = 19/200 (9%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
              +++     +          + I G++NAGKSSL N L    V +   +  T    + 
Sbjct: 253 LAGMATVRETKRSARRRGEVPAVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTVR 312

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK- 318
                +G    ++DT G          E  + T  EV +ADLIL + + ++    +    
Sbjct: 313 RATLPDGRAFTLTDTVGFVRHLPHQIVEAFRSTLEEVADADLILHVVDGSAPDPAAQISA 372

Query: 319 -----------NIDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGLEELINKIKS 360
                      N+  + +  K D                   +S+ TGEGL  L++ + +
Sbjct: 373 VREVLNDIDAGNVAELIVVNKVDATEPTVLAGLRQLAPDAVFVSARTGEGLTALVDALCA 432

Query: 361 ILSNKFKKLPFSIPSHKRHL 380
            + +   ++   +P  +  L
Sbjct: 433 RVPHPDVEMKVLVPYTRGDL 452


>gi|75675642|ref|YP_318063.1| GTP-binding protein, HSR1-related [Nitrobacter winogradskyi Nb-255]
 gi|74420512|gb|ABA04711.1| GTP-binding protein HflX [Nitrobacter winogradskyi Nb-255]
          Length = 442

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 100/270 (37%), Gaps = 35/270 (12%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E   ++ +  ++ + S L   W   L   R          E +       + + +
Sbjct: 124 RAKTKEGALQVELAHLNYQRSRLVRSWTH-LERQRGGFGFMGGPGETQI--EADRRLIGD 180

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  L+N++    +  +L    R       + ++G++NAGKS+LFN L + DV     + 
Sbjct: 181 RITRLENELKKVQATRRLHRAGRQRVPYRVVALVGYTNAGKSTLFNRLTRADVQAADMLF 240

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T    L       G    +SDT G             + T  EV  AD+IL +++I+ +
Sbjct: 241 ATLDPTLRSLALPHGGKAMLSDTVGFISNLPTQLVAAFRATLEEVMEADVILHVRDISHE 300

Query: 312 K---------------EISFPKNIDFIFIGTKSDLYST-------------YTEEYDHLI 343
                            I        I +  K D +                T+    L+
Sbjct: 301 DTEPQQHDVEAVLHQLGIDPDGPARMIEVWNKIDRFDADQRKDLENVAARRSTDVPRFLV 360

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           S+ TGEG+E L+  I+  L+     L  S+
Sbjct: 361 SAETGEGVETLLAAIEDRLAATRTTLDLSV 390


>gi|282897592|ref|ZP_06305592.1| Small GTP-binding protein domain protein [Raphidiopsis brookii D9]
 gi|281197515|gb|EFA72411.1| Small GTP-binding protein domain protein [Raphidiopsis brookii D9]
          Length = 504

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 113/272 (41%), Gaps = 38/272 (13%)

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII----RNGYKIVI 224
           RS + A    + + D  + + + V   +  ++++++      + GEI     R   ++V+
Sbjct: 75  RSRVTAAQIPAVKSDAASTTLQAVRQQVAQIQDEVTRQALLSRTGEIEANLARGEIQVVV 134

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETD- 281
            G  +AGK+SL NA+  + V  V    GTT+   T  L L+G    + I+DT GI E   
Sbjct: 135 FGTGSAGKTSLVNAIMGRMVGEVNAPMGTTKVGETYCLRLKGVERKILITDTPGILEAGI 194

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTY 335
              E+E + RT      A+L+L + + + ++    P           + +  K+DLY   
Sbjct: 195 AGTEREHLARTL--ATEANLLLFVVDNDLRRSEYEPLRGLAEIGKRSLLVLNKTDLY--- 249

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS---------QT 386
                        E  + ++ K++  + +          +       L          + 
Sbjct: 250 -----------KDEDKDAILIKLRERVKDYINHNDVVAIAANPQAVELEGGEIFRPEPEI 298

Query: 387 VRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
           V  L+  +   +  G D+IA+N+ L S+ LG+
Sbjct: 299 VPLLKRIAAVLRAEGEDLIADNILLQSLRLGE 330


>gi|222151146|ref|YP_002560300.1| hypothetical protein MCCL_0897 [Macrococcus caseolyticus JCSC5402]
 gi|222120269|dbj|BAH17604.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 425

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 118/322 (36%), Gaps = 34/322 (10%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKLTHIRSF- 171
           N ++   +++ L +++  +     Q  L   +       G+L     Q    L  +    
Sbjct: 86  NNELTTSQSKHLNEVLDCKIIDRTQLILDIFAQRAKSREGKLQVELAQLEYLLPRLSGHG 145

Query: 172 ---------IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
                    I        + ++     +  ++DI      I  H  + +     RN +++
Sbjct: 146 LSLSRLGGGIGTRGPGETKLEMNRRHIRSRIHDIKLQLETIKQHRQRYRENRKKRNIFQV 205

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETD 281
            ++G++NAGKS+ FNAL+  D   + D+   T D  +  + L EGY V +SDT G  +  
Sbjct: 206 ALVGYTNAGKSTWFNALSDSD-TYMEDLLFATLDPKSKMMKLHEGYPVLLSDTVGFIQQL 264

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK-------KEISFPKNIDFIFI-----GTKS 329
                E    T  E + AD+++ + + +           I+  K +D   I       K 
Sbjct: 265 PTHLIEAFSSTLEEAKYADILIHVVDRSHPNYMNHIDTVIALLKELDMDTIPVLTLLNKK 324

Query: 330 DLYSTY---TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           D   ++     + + L+S F  +    + NK+  ++     K    +      +    + 
Sbjct: 325 DKLESFVTAAGKDELLVSVFDKQDKIHIQNKLIDMMQRNMSKYAIEVDKDAGQIIAFLKE 384

Query: 387 VRYLEMASLNEKDCGLDIIAEN 408
              +   + NE     +I    
Sbjct: 385 HTLVSAINFNEDKDKYEIYGYE 406


>gi|170756488|ref|YP_001783220.1| GTP-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169121700|gb|ACA45536.1| GTP-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 399

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 14/170 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276
           N   I  +G +N+GKSSL NA+  +D++IV+ I GTT D ++  ++L     V  +DTAG
Sbjct: 8   NRIHITFIGKTNSGKSSLMNAIIGQDISIVSSIEGTTTDPVSKAMELIPLGPVLFTDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTK 328
           + +  ++  K  I++T   +   +  + +          + K        NI +I +  K
Sbjct: 68  LEDNTELG-KVRIEKTLNTLLKTNFAIYVMSAKDIDISLYEKTINKFKEQNISYITVVNK 126

Query: 329 SDLYSTYT----EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            D     T    E+        +   +  ++N   SI+ N  K       
Sbjct: 127 IDTVDKNTINELEKIIKEPIFVSSNDINSILNLKDSIIKNLSKSKEDDTI 176


>gi|308048239|ref|YP_003911805.1| GTP-binding protein HflX [Ferrimonas balearica DSM 9799]
 gi|307630429|gb|ADN74731.1| GTP-binding protein HflX [Ferrimonas balearica DSM 9799]
          Length = 428

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 93/265 (35%), Gaps = 25/265 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +E + 
Sbjct: 114 RARTHEGKLQVELAQLRHLSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRERIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL   + ++    QG+     R    + ++G++NAGKS+LFN +    V    D    T
Sbjct: 173 AILRRLDRVARQREQGRRARQRREVPTVSLVGYTNAGKSTLFNRITDSGV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     +++     V ++DT G             K T  E   ADL+L + +   ++ 
Sbjct: 232 LDPTLRRIEVADVGPVVLADTVGFIRHLPHDLVAAFKGTLTETREADLLLHVIDAADERA 291

Query: 314 IS------------FPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +                 +  + +  K DL        D           +S+    G++
Sbjct: 292 VENVEAVNEVLAEIEADEVPSLLVYNKLDLLEEAEARIDRNDEGEPIRVWLSARNDVGID 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK 377
            L   +   L N   +L  S+P  +
Sbjct: 352 LLFEALSERLGNTMVELTVSLPPSE 376


>gi|304382175|ref|ZP_07364686.1| GTP-binding protein HflX [Prevotella marshii DSM 16973]
 gi|304336773|gb|EFM02998.1| GTP-binding protein HflX [Prevotella marshii DSM 16973]
          Length = 417

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 17/196 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  I  LK  +   I + K  +    G   ++ ++G++N GKS+L N ++K +
Sbjct: 181 EMDRRIILQRITLLKQRLVE-IDRQKTTQRKNRGRMIRVALVGYTNVGKSTLMNLISKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + +E     ++DT G          E  K T  EV  AD++L
Sbjct: 240 V-FAENKLFATLDTTVRKVVIENLPFLLADTVGFIRKLPTDLVESFKSTLDEVREADMLL 298

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYS-TYTEEYDHLISSFTGEG 350
            + +I+    +++I   +N            I +  K D Y+    E+ D    +     
Sbjct: 299 HVVDISHPDFEEQIRVVENTLKDLGCSEKPSIIVFNKIDAYTWVEKEDDDLTPPTKENMT 358

Query: 351 LEELINKIKSILSNKF 366
           LEEL     + L    
Sbjct: 359 LEELKKTWMARLQENC 374


>gi|209524644|ref|ZP_03273191.1| small GTP-binding protein [Arthrospira maxima CS-328]
 gi|209494788|gb|EDZ95096.1| small GTP-binding protein [Arthrospira maxima CS-328]
          Length = 547

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 102/250 (40%), Gaps = 36/250 (14%)

Query: 190 KEVLNDILFLKNDI--SSHISQGK--LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           K +   +  +++++   + IS+ +     + +   ++VI G  +AGK+SL N L  + V 
Sbjct: 97  KAIRQQVNQIQDEVARQALISRSQDIQANLSQGSIQVVIFGTGSAGKTSLVNGLMGEMVG 156

Query: 246 IVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            V    GTT +  T  L+L+G    + I DT GI E  +       +        ADL+L
Sbjct: 157 RVDAPMGTTINGETYRLELKGLNREILIIDTPGIGEVGEGGVTRS-EMARTLATEADLLL 215

Query: 304 LLKEINSKKEISFPK------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            + + + ++   +P           + I  K+DLY+   +               +++N+
Sbjct: 216 FVVDNDLRQSELYPLRNLAEMGKRSLLIFNKTDLYTEADKN--------------QILNR 261

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQ---------TVRYLEMASLNEKDCGLDIIAEN 408
           +K  +S           +    L +L            +  +   +   +  G ++IA+N
Sbjct: 262 LKQRVSGFISPEDVIAIAANPQLINLDNGDTFKPEPDIMPLIHKIATILRAEGEELIADN 321

Query: 409 LRLASVSLGK 418
           + L S  LG+
Sbjct: 322 ILLQSQRLGE 331


>gi|150021609|ref|YP_001306963.1| ferrous iron transport protein B [Thermosipho melanesiensis BI429]
 gi|149794130|gb|ABR31578.1| ferrous iron transport protein B [Thermosipho melanesiensis BI429]
          Length = 646

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 19/167 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GK+S+FN L       V + PG T   +    +  G  + I D  G   
Sbjct: 3   ISVALVGNPNVGKTSIFNRLVGA-RQYVANWPGVTVTKIEGATEWRGNTLHIIDLPGTYS 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPK-NIDFIFIGTKSDLYS 333
                  E + R +L     ++ +L+ +  + ++     I   +   D I +    D   
Sbjct: 62  LTSKTIDEQVARDYLFFSPPNVTVLIADSLNPEQSFYLLIELLEITNDVILVMNSIDEVK 121

Query: 334 TYTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKK 368
               + D               S+ TGEG++EL +KI  + + K  K
Sbjct: 122 NKKIKIDKFELEKHFGVPVVFTSAKTGEGIDELKDKIVEVANGKHTK 168


>gi|78183961|ref|YP_376396.1| putative GTP-binding protein, transporter associated [Synechococcus
           sp. CC9902]
 gi|78168255|gb|ABB25352.1| putative GTP-binding protein, transporter associated [Synechococcus
           sp. CC9902]
          Length = 555

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 108/290 (37%), Gaps = 41/290 (14%)

Query: 123 IDLLEAESLADLISS----ETEMQRRL-SME--GMSGELSSLYGQWIDKLTHIRSFIEAD 175
           +  ++A ++  L++      +E+   + +      +G L     Q   +L  +    ++ 
Sbjct: 258 LTPVQARNIERLVNCPVSDRSELILDIFAQRAGSAAGRLQVELAQLRYRLPRLLGRGQSM 317

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK--------IVILGH 227
                    +     ++  D   +   I   +   +  +  R+  +        + ++G+
Sbjct: 318 SRQGGGIGTRGPGETQLEKDRRAISRRIERLLRDQQQLQAHRSRLRDQRRGLPRVALVGY 377

Query: 228 SNAGKSSLFNALAKK---DVAIVTDIPGTTRDVLTIDLDLE-----GYLVKISDTAGIRE 279
           +NAGKSSL NAL  +   D  +  +    T D  T  LDL         + ++DT G   
Sbjct: 378 TNAGKSSLLNALCGQRESDRVLAENKLFATLDPTTRKLDLPRPGERPQRMLLTDTVGFIR 437

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI-----------SFPKNIDFIFIGTK 328
                  E  + T  E  +ADL+L++ ++     +           S   +     +  +
Sbjct: 438 DLPKPLVEAFRATLEEALDADLLLIVVDLADPDWVGQLSTVHRLLDSLGSSALRRVVANQ 497

Query: 329 SD------LYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
            D      ++S   +E D   +S+  G+GL+ L + ++S   +   +   
Sbjct: 498 IDRCELEAIHSIRDQEPDALFLSAVRGDGLQGLQDWLRSQFFDSDAESSA 547


>gi|268559272|ref|XP_002637627.1| Hypothetical protein CBG19372 [Caenorhabditis briggsae]
          Length = 1328

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 90/246 (36%), Gaps = 26/246 (10%)

Query: 138  ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
              E Q ++++  +   + +       K  H R  I   ++    E V+   ++ +     
Sbjct: 1019 TDEAQLQIALAEIP-YIKNRIHALSSKRLHSRPEIL-HIEQQYAE-VEGDLNEILRKREQ 1075

Query: 198  FLKNDISSHISQGKLGEIIRN--GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
             L+ D+     +       +N     + ++G++NAGK+SL   L         +    T 
Sbjct: 1076 DLRRDLKELTRKSSESIKSKNSSDAVVAVVGYTNAGKTSLVKRLTGASSLTPKNQLFATL 1135

Query: 256  DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
            D       L  G     +DT G      +      + T   V++AD+I+ L+++++    
Sbjct: 1136 DTTRHVAKLPSGRSAVFTDTIGFLSDLPMHLISAFEATLAHVKSADVIIHLRDVSNPDWK 1195

Query: 312  ----------KEISFPKN---IDFIFIGTKSDLYSTYTEE----YDHLISSFTGEGLEEL 354
                      K I   +N      I +  K D                IS  TG+G+++L
Sbjct: 1196 AQEEDVVATLKSIGVAENVLTERMITVDNKIDKEGVENIADATTKSIRISCKTGDGMQDL 1255

Query: 355  INKIKS 360
            I++I  
Sbjct: 1256 IDRINQ 1261


>gi|23099103|ref|NP_692569.1| GTP-binding protein protease modulator [Oceanobacillus iheyensis
           HTE831]
 gi|22777331|dbj|BAC13604.1| GTP-binding protein protease modulator [Oceanobacillus iheyensis
           HTE831]
          Length = 413

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 109/281 (38%), Gaps = 20/281 (7%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T+    ++ +  +   L         +L+ + + I        + +      +  +
Sbjct: 111 MRAQTKEGKLQVELAQLE-YLLPRLHGQGTQLSRLGAGIGTRGPGETKLETDRRHIERRI 169

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
            DI      +    SQ +      + ++I I+G++NAGKS+LFN L K   ++  D    
Sbjct: 170 YDIKRRLQLVVKQRSQYRQRRKANDVFQIAIVGYTNAGKSTLFNRLTKSS-SLEEDQLFA 228

Query: 254 TRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D LT  + L    +  I+DT G  +          K T  EV  AD +L + + +   
Sbjct: 229 TLDPLTRRVKLPSDMICLITDTVGFIQDLPTALIAAFKSTLEEVAEADFLLHVVDASDSD 288

Query: 313 ------------EISFPKNIDFIFIGTKSDLY---STYTEEYDHLISSFTGEG-LEELIN 356
                       E     +I  + +  K DL         ++ +++ S   E  L+ ++ 
Sbjct: 289 LNQQQKTVQKLLEELNANHIPMLTVYNKKDLIQGEDFIANQFPNVLVSAYDENDLQHMML 348

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
           +++SIL  ++      +   K  L +  +T   +     NE
Sbjct: 349 QVESILKEEWNFYTTHVHPEKGDLLYRLKTETLITNREFNE 389


>gi|325972144|ref|YP_004248335.1| GTP-binding protein Era-like-protein [Spirochaeta sp. Buddy]
 gi|324027382|gb|ADY14141.1| GTP-binding protein Era-like-protein [Spirochaeta sp. Buddy]
          Length = 293

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 8/125 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  +AGKS+L N + +  V+I    P TTR+ +          +  +DT G   ++
Sbjct: 6   VAIIGRPSAGKSTLLNTICEMKVSITASTPQTTRNAIRGIYTDARGQLIFTDTPGFHLSE 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDLYS 333
             + K         +E +D +L + +      ++E++            I +  K+D+  
Sbjct: 66  KTLNKRLQDTALKSLEESDAVLYIIDSKRSAGEEELALVSHIAKIKTPVICVINKADIIR 125

Query: 334 TYTEE 338
              EE
Sbjct: 126 DSEEE 130


>gi|256851876|ref|ZP_05557264.1| GTP-binding protein HflX [Lactobacillus jensenii 27-2-CHN]
 gi|260661863|ref|ZP_05862773.1| GTP-binding protein HflX [Lactobacillus jensenii 115-3-CHN]
 gi|282934463|ref|ZP_06339720.1| GTP-binding protein HflX [Lactobacillus jensenii 208-1]
 gi|297205501|ref|ZP_06922897.1| GTP-binding protein HflX [Lactobacillus jensenii JV-V16]
 gi|256615834|gb|EEU21023.1| GTP-binding protein HflX [Lactobacillus jensenii 27-2-CHN]
 gi|260547332|gb|EEX23312.1| GTP-binding protein HflX [Lactobacillus jensenii 115-3-CHN]
 gi|281301475|gb|EFA93762.1| GTP-binding protein HflX [Lactobacillus jensenii 208-1]
 gi|297150079|gb|EFH30376.1| GTP-binding protein HflX [Lactobacillus jensenii JV-V16]
          Length = 423

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 27/221 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNAL--- 239
             + + +   I  +K ++ +  +Q ++    RN  K   + ++G++NAGKS+  N L   
Sbjct: 162 ELNRRTIDKQITTIKKELQNVATQEEIKSKRRNNSKLPQVALVGYTNAGKSTTMNGLLKV 221

Query: 240 ----AKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFL 294
                 K+V  V ++   T D     ++ +G     ISDT G          E  K T  
Sbjct: 222 FGSDTGKEV-FVKNMLFATLDTSVRRINFDGTNDFIISDTVGFISKLPHNLIESFKATLK 280

Query: 295 EVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEY--- 339
           E  +ADLI+ + + +    +   K            N+  +    K+DL +    E    
Sbjct: 281 EASDADLIVNVVDSSDSNMLQMIKTTQKVLHEIGITNVPIVTAYNKADLTTKKFPEIEGN 340

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           D L S+   E ++ L   I   + + +K L   +P +   L
Sbjct: 341 DILYSAKDSESIKVLAKFITKRVFSNYKSLNIKLPLNAGAL 381


>gi|269798900|ref|YP_003312800.1| small GTP-binding protein [Veillonella parvula DSM 2008]
 gi|269095529|gb|ACZ25520.1| small GTP-binding protein [Veillonella parvula DSM 2008]
          Length = 456

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 6/146 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKS+L N L  + V++V+D+ GTT D ++  +++     V I+DTAG
Sbjct: 8   NRIHIGFFGRCNAGKSTLINMLTDQPVSLVSDVAGTTTDPVSKAMEILPLGPVVITDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           I +T ++      ++T   ++  +L + +  + + +E +         +   +   + + 
Sbjct: 68  IDDTTELGTLRM-EKTEEVLKKINLAVYV--LRTDEEPTSDDMHWLGLLKQNNVPVALFI 124

Query: 337 EEYD--HLISSFTGEGLEELINKIKS 360
            E +            ++EL   I  
Sbjct: 125 NEINSTKFDKHLYKNDIDELKENIVK 150


>gi|294792411|ref|ZP_06757558.1| GTP-binding protein [Veillonella sp. 6_1_27]
 gi|294456310|gb|EFG24673.1| GTP-binding protein [Veillonella sp. 6_1_27]
          Length = 421

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKS+L N L  + V++V+D+ GTT D ++  +++     V I+DTAG
Sbjct: 8   NRIHIGFFGRCNAGKSTLINMLTDQPVSLVSDVAGTTTDPVSKAMEILPLGPVVITDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
           I +T ++      ++T   V+  +L + +   + +     P + D  ++G
Sbjct: 68  IDDTTELGALRM-EKTEEVVKKINLAVYVLRTDEE-----PNSDDMHWLG 111


>gi|229157282|ref|ZP_04285362.1| hypothetical protein bcere0010_34660 [Bacillus cereus ATCC 4342]
 gi|228626346|gb|EEK83093.1| hypothetical protein bcere0010_34660 [Bacillus cereus ATCC 4342]
          Length = 424

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 104/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQW-------IDKL 165
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q        + + 
Sbjct: 80  NNELTPSQIRNLSAVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKI 222
             +             E       + + + +  +K  ++    H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRVDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADSNYVGHEKTVKQLLSELEINHIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F    L  +   I++ +  +  +    IP  +
Sbjct: 319 DELHQNFIPFPKSDFLMTSAFEENDLLHIKEAIETKMKEEMNRYQVEIPPSE 370


>gi|198276140|ref|ZP_03208671.1| hypothetical protein BACPLE_02329 [Bacteroides plebeius DSM 17135]
 gi|198270952|gb|EDY95222.1| hypothetical protein BACPLE_02329 [Bacteroides plebeius DSM 17135]
          Length = 418

 Score = 71.4 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 90/220 (40%), Gaps = 23/220 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +LN +  LK  + + I   K  +    G   ++ ++G++N GKS+L N LAK +
Sbjct: 182 EMDRRIILNRMALLKQRL-AEIDTQKSTQRKNRGRMIRVALVGYTNVGKSTLMNLLAKSE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + +E     +SDT G          +  K T  EV  ADL++
Sbjct: 241 V-FAENKLFATLDTTVRKVIIENLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLV 299

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            + +I+    +++I   +             + +  K D Y TY E+ +  ++  T E +
Sbjct: 300 HVVDISHPDFEEQIQVVEKTIADLGAGGKPSMIVFNKVDAY-TYVEKAEDDLTPKTKENI 358

Query: 352 EELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYL 390
                 ++ ++     KL  + I    R   ++ Q    L
Sbjct: 359 -----TLEELMHTWMAKLNDNCIFISAREKTNIDQFRELL 393


>gi|324508162|gb|ADY43450.1| GTP-binding protein 6 [Ascaris suum]
          Length = 496

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 21/214 (9%)

Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY--KIVILGH 227
           S +      S + D               +K  +   ++    GE I+ G    + ++G+
Sbjct: 215 SILHVTFPISTKGDKWEVLRLREHTLRKRIKAAVDEKLNAVN-GERIQRGIAATVALVGY 273

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEK 286
           +N GKSSL   L + +   V D    T D       L  G  + ++DT G      +   
Sbjct: 274 TNTGKSSLIRRLTQDESIFVEDRLFATLDSSAHFCRLPSGTPILLTDTIGFISDLPMQLF 333

Query: 287 EGIKRTFLEVENADLILLLKEINSK-------------KEISFPKN--IDFIFIGTKSD- 330
                T   V NADL+L++++++                 +S  ++     I++G K D 
Sbjct: 334 ASFHATLSHVVNADLLLVVEDVSHPNVMAQREVVIETLDALSVKRSLVDSLIYVGNKCDK 393

Query: 331 LYSTYTEEYDHLI-SSFTGEGLEELINKIKSILS 363
           +      + D    S   G G+++LI +I   + 
Sbjct: 394 IDPQLCHQPDVCYISCLNGSGIKQLIAEIDKRVM 427


>gi|154253563|ref|YP_001414387.1| GTP-binding protein HSR1-like [Parvibaculum lavamentivorans DS-1]
 gi|154157513|gb|ABS64730.1| GTP-binding protein HSR1-related [Parvibaculum lavamentivorans
           DS-1]
          Length = 474

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 105/301 (34%), Gaps = 33/301 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ + S L   W         F         + +      +E + 
Sbjct: 142 RARTREGSLQVELAHLNYQKSRLVRSWTHLERQRGGFGFLGGPGETQIEADRRLIQERIA 201

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +       +          + ++G++NAGKS+LFN L +  V    ++   T
Sbjct: 202 KIEHQLETVKRTRELHRKKRREAPYPIVALVGYTNAGKSTLFNRLTEAGV-FAENLLFAT 260

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     L L  G  + +SDT G             + T  EV  A++IL +++   ++ 
Sbjct: 261 LDPTMRALVLPSGRKIILSDTVGFISDLPTHLVAAFRATLEEVLEAEVILHVRDAAHEET 320

Query: 313 ------------------EISFPKNIDFIFIGTKSDLYS----------TYTEEYDHLIS 344
                             E +       + +  K DL               E     +S
Sbjct: 321 AIQKTDVEKVLTSLGVTRESTAANGQHVVDVLNKIDLLEGEFRDAAVNLAMREPMTVAVS 380

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLEMASLNEKDCGLD 403
           + TG+G E L+N I S++ +  + + F +P+++   +  L            +E    LD
Sbjct: 381 ALTGDGTENLLNLIDSLIVDDERPVHFDVPANEGEAIAWLHANAHIRNRVDGDEGIVHLD 440

Query: 404 I 404
           +
Sbjct: 441 L 441


>gi|190891663|ref|YP_001978205.1| GTP-binding protein [Rhizobium etli CIAT 652]
 gi|190696942|gb|ACE91027.1| GTP-binding protein [Rhizobium etli CIAT 652]
          Length = 441

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 31/225 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + I+ L+ ++   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 166 EADRRLLQDRIIKLERELEQVVRTRQLHRAKRRKVPHPIVALVGYTNAGKSTLFNRITGA 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 226 GV-LAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISDLPTHLVAAFRATLEEVLEADL 284

Query: 302 ILLLKEINSKKEISFPKNIDFIF----------------IGTKSDLYSTYTEEY------ 339
           IL +++++     +   ++  I                 +  K D   +   +       
Sbjct: 285 ILHVRDMSDPDNQAQSSDVMRILGDLGIDEAEAGKRLIEVWNKIDRLESEVHDAMVQKAA 344

Query: 340 ----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                  +S+ +GEG++ L+++I   LS    +    +P  K  L
Sbjct: 345 GASNVVAVSAVSGEGVDTLMDEISRRLSGVMTETTIRLPVDKLAL 389


>gi|149204767|ref|ZP_01881730.1| GTP-binding protein HflX [Roseovarius sp. TM1035]
 gi|149141736|gb|EDM29789.1| GTP-binding protein HflX [Roseovarius sp. TM1035]
          Length = 424

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ M  +S + + L   W                   + +    +  + L  
Sbjct: 119 AATREGVLQVEMAALSYQRTRLVRAWTHLERQRGGLGFVGGPGETQIEADRRAIDDQLVR 178

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +      ++   +  +          + ++G++NAGKS+LFN L   DV    D+   T 
Sbjct: 179 LRRQLEKVAKTRTLHRAARAKVPFPVVALVGYTNAGKSTLFNRLTGADVM-AKDMLFATL 237

Query: 256 DVLTIDLDL--EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           D     ++L   G  V +SDT G             + T  EV +ADLI  +++I+  + 
Sbjct: 238 DPTMRRVNLPEGGPEVILSDTVGFISDLPTELVAAFRATLEEVLSADLICHVRDISHPET 297

Query: 314 ISFPKNIDFIF-------------IGTKSDLYST----------YTEEYDHLISSFTGEG 350
           +S  +++  I              I  K D                +E    IS+ +G+G
Sbjct: 298 VSQSRDVATILESLGVSDKTPQIEIWNKIDRLPEDARAAAVTQAARQEDVIAISAISGQG 357

Query: 351 LEELINKIKSILSN 364
           L +LI+ I   LS+
Sbjct: 358 LSDLISAIGDKLSD 371


>gi|28211828|ref|NP_782772.1| GTP-binding protein hflX [Clostridium tetani E88]
 gi|28204270|gb|AAO36709.1| GTP-binding protein hflX [Clostridium tetani E88]
          Length = 593

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 39/274 (14%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI 207
           +   G++     Q   +L  +                +    +++  D   +KN I    
Sbjct: 282 KSREGKIQVELAQLKYRLPRLIGMGAVLSRTGGGIGTRGPGEQKLETDRRHIKNRIYDLS 341

Query: 208 SQGKLGEIIR--------NGYKIVILGHSNAGKSSLFNA---------LAKKDVAIVTDI 250
            + +  + IR           K+ ++G++N+GKS+L N          L+KKD  +  D+
Sbjct: 342 KELEKIKKIRKTQRASRNEVPKVSLVGYTNSGKSTLRNYMYNLFQSKELSKKDNVLEADM 401

Query: 251 PGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D  T  + L     + ++DT G          E  K T  EV +ADL+L + +I+
Sbjct: 402 LFATLDTTTRAIYLPDNRDITLTDTVGFIRKLPHDLVESFKSTLEEVMDADLLLHVVDIS 461

Query: 310 SKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYD---------HLISSFTG 348
           S   +   +            N   I +  K D  +    E             IS+  G
Sbjct: 462 SIHYLEQIEAVNNVLRELNALNKPSIILINKIDKINEDELETKLENLKNYKYVCISAKEG 521

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
             ++ L+ +I + L NK KK  + IP +K+ +  
Sbjct: 522 INIDVLLKEIINKLPNKLKKAEYLIPYNKQDVVA 555


>gi|84516232|ref|ZP_01003592.1| GTP-binding protein HflX [Loktanella vestfoldensis SKA53]
 gi|84509928|gb|EAQ06385.1| GTP-binding protein HflX [Loktanella vestfoldensis SKA53]
          Length = 424

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 97/274 (35%), Gaps = 26/274 (9%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   ++ M  +S + + L   W                   + +    +  + L  + 
Sbjct: 122 TSEGVLQVEMAALSYQRTRLVRAWTHLERQRGGLGFVGGPGETQIEADRRAIDDQLVRLR 181

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +    +  +          + ++G++NAGKS+LFN L   DV +  D+   T D 
Sbjct: 182 RQLEKVGKTRALHRASRAKVPFPIVALVGYTNAGKSTLFNMLTGADV-LAKDMLFATLDP 240

Query: 258 LTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---- 312
               + L  G  V +SDT G             + T  EV +ADLIL +++I+  +    
Sbjct: 241 TMRKITLPTGDEVIMSDTVGFISDLPTELVAAFRATLEEVLDADLILHIRDISHDQTEEQ 300

Query: 313 ---------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLI----------SSFTGEGLEE 353
                    ++   +N   I +  K DL      E               S+ TGEG+  
Sbjct: 301 ACDVMAILHKLGVAENAPLIEVWNKVDLLQGEAFEGRVNQAARTEDLFAVSALTGEGMAA 360

Query: 354 LINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQT 386
           L+  I   L +   +   ++   + R    L + 
Sbjct: 361 LLAAIPEKLKDPRSEALLTLSFAEGRKRAWLFEA 394


>gi|46202523|ref|ZP_00053076.2| COG2262: GTPases [Magnetospirillum magnetotacticum MS-1]
          Length = 421

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 95/265 (35%), Gaps = 26/265 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  +S + S L   W         F         + +       E + 
Sbjct: 107 RARTREGTLQVELAALSYQRSRLVRSWTHLERQRGGFGFLGGPGETQIEADRRMIGERIV 166

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +     D+       +          + ++G++NAGKS+LFN L + +V     +  T 
Sbjct: 167 KLERELEDVKRTRDLHRKARRKVPYPIVALVGYTNAGKSTLFNQLTRAEVLAKDMLFATL 226

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
              +   +   G  + +SDT G             + T  EV  AD+++ +++I+     
Sbjct: 227 DPTMRTLVLPSGRKIILSDTVGFISDLPHELVAAFRATLEEVLEADIVVHVRDISHPDTE 286

Query: 312 ----------KEISFPKNIDFIFI--GTKSDLYSTYTEEYDHLI----------SSFTGE 349
                     KE+   + +D   +    K DL                      S+ TG+
Sbjct: 287 AQSADVDTVLKELGLAEVVDRGLVEALNKIDLLDEERRHEVLNQARRRDGVMALSAITGQ 346

Query: 350 GLEELINKIKSILSNKFKKLPFSIP 374
           G++EL+ ++   L +  + +  ++P
Sbjct: 347 GVDELLAELDRRLGHARETIDVALP 371


>gi|309704622|emb|CBJ03972.1| putative MMR_HS1 domain protein [Escherichia coli ETEC H10407]
          Length = 290

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TDAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELCTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|212716036|ref|ZP_03324164.1| hypothetical protein BIFCAT_00948 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661403|gb|EEB21978.1| hypothetical protein BIFCAT_00948 [Bifidobacterium catenulatum DSM
           16992]
          Length = 332

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 77/206 (37%), Gaps = 34/206 (16%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L  +   + + DT 
Sbjct: 22  YRSGF-VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTP 80

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------------------KKEIS 315
           GI     ++ +         + + D I  L   +                     + + +
Sbjct: 81  GIHRPRTLLGQRLNDVVDESLADVDAIAFLLPGDQEIGPGDRRILSRLRSDFAVKRDDGT 140

Query: 316 FPKNIDFIFIGTKSD------LYSTYTEEYDH-------LISSFTGEGLEELINKIKSIL 362
           F   +  I I TK D      L +   E  +         +S+   + L E+ N +   +
Sbjct: 141 FKWKVPLIAIVTKIDELSREGLINKLIEINEFADFTDIVPVSALKHDNLAEVKNVLIENM 200

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVR 388
               +  P    + +R    +++ VR
Sbjct: 201 PEGPQMYPAEQITEERPEETIAELVR 226


>gi|113461247|ref|YP_719316.1| GTP-binding protein HflX [Haemophilus somnus 129PT]
 gi|112823290|gb|ABI25379.1| GTP-binding protein HflX [Haemophilus somnus 129PT]
          Length = 458

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 108/328 (32%), Gaps = 40/328 (12%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSM-------EGMSGELSSLYGQWIDK-------- 164
           N  +   +A +L  +       +  L +           G+L     Q            
Sbjct: 106 NHSLTPAQARNLESICQCRVVDRTGLILDIFAQRARSHEGKLQVELAQLRHLATRLVRRK 165

Query: 165 --LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L   +  +        + +      K  +  +      ++   +Q +      +   I
Sbjct: 166 TGLDQQKGAVGLRGPGETQLETDRRLIKVRITQLQNRLEKVAKQRNQNRQTRRKADIPTI 225

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETD 281
            ++G++NAGKS+LFN L + +V  V D    T D     L ++      ++DT G     
Sbjct: 226 SLVGYTNAGKSTLFNVLTQANV-YVADQLFATLDPTLKRLPIQDVGNCVLADTVGFIREL 284

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS------------FPKNIDFIFIGTKS 329
                   K T  E   A L+L + ++   +++                 +  + +  K 
Sbjct: 285 PHDLVSAFKSTLQETTEASLLLHVIDVADSRKLENMLTVNEVLSEIKANQVTTLLVYNKI 344

Query: 330 DLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           D         +           +S+   +GL+ L+  I+  LS++   L  ++ +    +
Sbjct: 345 DQVENIQPHIEFDEENQPIAVYLSAQLNQGLDLLVEAIRQKLSHEILHLEINLAAQYGKI 404

Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAEN 408
            H    +  +    +NE+   L  I  +
Sbjct: 405 RHCFYQLNCVRQEKINEQGEFLLDIQID 432


>gi|71891869|ref|YP_277598.1| hypothetical protein BPEN_083 [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71795975|gb|AAZ40726.1| HflX [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 428

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 85/250 (34%), Gaps = 23/250 (9%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    S L  +W                   + +      ++ +N IL     I + 
Sbjct: 128 LAQLRHLNSRLVHEWSHLERQKGGIGLRGGAGEMQLESDRRLLRKEMNQILLRLKKIENQ 187

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
             QG+   +      + ++G++NAGKS+LFN +    V   +     T D  +  +  +G
Sbjct: 188 REQGRRHRVRIGVPTVSLVGYTNAGKSTLFNTMTASHV-YTSSKLFATLDPTSRRIVYKG 246

Query: 267 -YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------- 318
            + + ++DT G  +          + T  E   A L+L + ++  ++             
Sbjct: 247 VHDIILTDTVGFIQNLPRGLISSFQATLKETVQATLLLHVVDVADERFEQNINTVHCILS 306

Query: 319 -----NIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSN 364
                N+  I +  K D         D           IS+    GL  L+  I  +LSN
Sbjct: 307 NLNVHNVPRILVMNKIDQLKKIVPRIDRDNHGRPIRVWISAQNNLGLSLLLQAINELLSN 366

Query: 365 KFKKLPFSIP 374
                   +P
Sbjct: 367 YMISYELRMP 376


>gi|194436751|ref|ZP_03068851.1| putative GTPase [Escherichia coli 101-1]
 gi|194424233|gb|EDX40220.1| putative GTPase [Escherichia coli 101-1]
          Length = 290

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 105/248 (42%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMIITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +   ++ +  K    +   F+ +  
Sbjct: 137 RHILQCGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQVQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRGQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|326387750|ref|ZP_08209356.1| small GTP-binding protein domain-containing protein
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207796|gb|EGD58607.1| small GTP-binding protein domain-containing protein
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 448

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 98/281 (34%), Gaps = 38/281 (13%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E + ++ +  +  +   L   W   L   R          E +       + +   
Sbjct: 132 AATAEGRLQVELAHLDYQAGRLVRSWTH-LERQRGGFGFLGGPGETQI--EADRRLIRGR 188

Query: 196 ILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  ++ ++        L    R       I ++G++NAGKS+LFN L    V    D+  
Sbjct: 189 MARIRRELEQVRRTRGLHRERRQRAPWPIIALVGYTNAGKSTLFNRLTGATVM-AEDLLF 247

Query: 253 TTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D     + L G     +SDT G             + T  EV  AD+I+ ++++ + 
Sbjct: 248 ATLDPTMRAIRLPGVDKAILSDTVGFISDLPTQLVAAFRATLEEVTAADVIVHVRDVANP 307

Query: 312 KEISFPKN-----------------IDFIFIGTKSDLYST-------------YTEEYDH 341
                 +                  I  +    K DL +                +    
Sbjct: 308 ASAQQKREVEDILTDLGVIGEEGTSIPIVEAWNKIDLLAPDERALREDLITHGVPDRPVV 367

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
            IS+ TGEG++ L+ ++ ++L+   + L  ++P  +     
Sbjct: 368 PISAATGEGVDALVERLGTMLTGGAQTLEITVPMAEGQKLA 408


>gi|284041081|ref|YP_003391011.1| GTP-binding proten HflX [Spirosoma linguale DSM 74]
 gi|283820374|gb|ADB42212.1| GTP-binding proten HflX [Spirosoma linguale DSM 74]
          Length = 426

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 14/159 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAI 246
             + V + I FLK  ++    Q       R+   ++ ++G++N GKS+L   +AK DV  
Sbjct: 167 DRRIVKDRIAFLKEKLAKIDKQSVTRRKERDRLVRVALVGYTNVGKSTLMRTMAKADV-F 225

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + L      ++DT G       +  E  K T  EV  AD+++ + 
Sbjct: 226 AENKLFATVDSTVRKVTLGNIPFLLTDTVGFIRKLPTMLIESFKSTLDEVREADILVHVV 285

Query: 307 EINS---KKEISF---------PKNIDFIFIGTKSDLYS 333
           +++    +++I             +   + +  K D +S
Sbjct: 286 DVSHPNFEEQIEVVNSTLADIKAADKPMVLVFNKMDRFS 324


>gi|239636993|ref|ZP_04677987.1| GTP-binding protein HflX [Staphylococcus warneri L37603]
 gi|239597343|gb|EEQ79846.1| GTP-binding protein HflX [Staphylococcus warneri L37603]
          Length = 413

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 106/289 (36%), Gaps = 21/289 (7%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + +++     ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRAKSREGKLQVELAQLD-YLLPRLQGHGRSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        ++I ++G++NAGKSS FN LA +       +   
Sbjct: 180 NEIKHQLQTVVEHRDRYRSKREQNQVFQIALVGYTNAGKSSWFNVLANETTYEQNQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T  + + EG+ + ISDT G  +          K T  E + ADL+L + + +  +
Sbjct: 239 TLDPKTRQIQINEGFNLIISDTVGFIQKLPTTLVAAFKSTLEEAKGADLLLHVVDASHPE 298

Query: 313 ------------EISFPKNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELINKIK 359
                       +      I    I  K D   S            F     E   +K+K
Sbjct: 299 YRSQYDTVNQLIKQLDMDQIPQSVIFNKKDQCPSNMDLPVSEQPYVFVSSRDESDKDKVK 358

Query: 360 SILSNKFKKL----PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           ++L N+ K+       ++PS      +  +    +   + NEKD   +I
Sbjct: 359 NLLINQIKRSLTYYEETVPSSDADRLYFLKQHTLVSELNFNEKDESYEI 407


>gi|91210166|ref|YP_540152.1| hypothetical protein UTI89_C1138 [Escherichia coli UTI89]
 gi|91071740|gb|ABE06621.1| hypothetical protein UTI89_C1138 [Escherichia coli UTI89]
 gi|294493231|gb|ADE91987.1| putative GTPase [Escherichia coli IHE3034]
 gi|307627510|gb|ADN71814.1| hypothetical protein UM146_12225 [Escherichia coli UM146]
          Length = 290

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHNMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSVRTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|262277163|ref|ZP_06054956.1| GTP-binding protein Era [alpha proteobacterium HIMB114]
 gi|262224266|gb|EEY74725.1| GTP-binding protein Era [alpha proteobacterium HIMB114]
          Length = 269

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 15/176 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G +N+GKS+L N  A K V+IV+    TT   +   ++ +   +   DT G  + D
Sbjct: 6   IALSGPTNSGKSTLLNCFANKKVSIVSKKIQTTNFNIEFSINFKNTQMIFIDTPGFYK-D 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
           +I +    +     +E AD+++ + +IN+K         +   I  K  +++   +  + 
Sbjct: 65  NINDNYLRE-AIQGLERADIVIFILDINNKFRHLDKIKNNLEKIKNKILVFNKIDKVDN- 122

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
                     +E++ KIK++  +   K             +  + + Y+E  SL E
Sbjct: 123 ----------DEILEKIKTL--DFINKFDEIFYISALKKKNTEKILNYIEKKSLKE 166


>gi|169349701|ref|ZP_02866639.1| hypothetical protein CLOSPI_00439 [Clostridium spiroforme DSM 1552]
 gi|169293776|gb|EDS75909.1| hypothetical protein CLOSPI_00439 [Clostridium spiroforme DSM 1552]
          Length = 408

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 92/234 (39%), Gaps = 23/234 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA-- 240
               + + N I   KN ++  + Q +     R       I ++G++N+GKS+L NA    
Sbjct: 153 ELDRRMIANQIYQAKNQLAKIVKQRQTQRKKRKNNEMKVIALVGYTNSGKSTLMNAFCID 212

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K    +  ++   T    T ++ +  +   ++DT G          +  + T  EV  AD
Sbjct: 213 KNKQVLQKNMLFATLQTATRNIKINHHPCLLTDTVGFINRLPHHLVQAFRSTLEEVVEAD 272

Query: 301 LILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYS---TYTEEYDHLIS 344
           L++ + +  ++             KE+   K+   I+   K DL        ++    IS
Sbjct: 273 LLIHVVDTTNENYEMCIETTNQVLKELGI-KDTPMIYAYNKIDLNKYAFIIPKDPYVFIS 331

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY-HLSQTVRYLEMASLNE 397
           +    G E+L   I SIL   +     +IP     ++ +L Q    LE   L +
Sbjct: 332 AKEQIGFEQLEKMISSILFKDYAIYNLNIPYRDGEIFSYLHQHCLVLEFEYLED 385


>gi|15605103|ref|NP_219888.1| GTP binding protein [Chlamydia trachomatis D/UW-3/CX]
 gi|3328804|gb|AAC67975.1| GTP Binding Protein [Chlamydia trachomatis D/UW-3/CX]
 gi|297748509|gb|ADI51055.1| HflX [Chlamydia trachomatis D-EC]
 gi|297749389|gb|ADI52067.1| HflX [Chlamydia trachomatis D-LC]
          Length = 447

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 96/265 (36%), Gaps = 23/265 (8%)

Query: 135 ISSETEMQRRLSM-EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           +++E  +Q  L+    +   L  ++G    + +          +  ++ ++     +E +
Sbjct: 141 LTAEAGLQVELAQARYLLPRLKRMWGHLSRQKSGGSGGGFVKGEGEKQIELDRRIVRERI 200

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           + +     ++     + +  +         ++G++N+GKS+L N L   D   V +    
Sbjct: 201 HKLSRDLKNVERQREERRKAKKRNQIPTFALIGYTNSGKSTLLNLLTSAD-TYVENKLFA 259

Query: 254 TRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T    L  G  V ++DT G             K T       D++L + + +   
Sbjct: 260 TLDPKTRRCVLPCGQRVLLTDTVGFIRKLPHTLVAAFKSTLEAALQEDILLHVVDASHPL 319

Query: 313 EISFPK------------NIDFIFIGTKSDLYS--------TYTEEYDHLISSFTGEGLE 352
            + + +                I +  K D  +                 +S+ TGEG+ 
Sbjct: 320 ALEYVETTKAILQELGITQPQVITVLNKMDKVADGVTASRLRLMSPNPVCVSAKTGEGIR 379

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK 377
           EL+  ++ ++  ++ +    +P  +
Sbjct: 380 ELLRSMEDMVQEEYPQATLHLPYKE 404


>gi|221234570|ref|YP_002517006.1| GTP-binding protein Era [Caulobacter crescentus NA1000]
 gi|13959353|sp|P58071|ERA_CAUCR RecName: Full=GTPase Era
 gi|254783291|sp|B8H630|ERA_CAUCN RecName: Full=GTPase Era
 gi|220963742|gb|ACL95098.1| GTP-binding protein era [Caulobacter crescentus NA1000]
          Length = 316

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 73/201 (36%), Gaps = 35/201 (17%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  NAGKS+L N +    V+IVT    TTR  +          + + DT GI     
Sbjct: 14  AIIGAPNAGKSTLVNRMVGAKVSIVTQKVQTTRFPVRGVAIEGDTQIVLVDTPGIFSPRR 73

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKK----------------------EISFPKNI 320
            +++  ++  +   E A+  + L ++ ++                       E     + 
Sbjct: 74  RLDRAMVRAAWAGSEEAEATVHLVDVQAELASRADKATPGEYRSAQDVQTIIEGLKAADR 133

Query: 321 DFIFIGTKSD------LYSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFK 367
             I    K D      L +   + +D        +IS+ TG G+E+L  K+ S++     
Sbjct: 134 KVILALNKIDGIKRDTLLAVAKDFFDTGVYSDVFMISASTGAGVEDLTAKLVSMMPEGPW 193

Query: 368 KLPFSIPSHKRHLYHLSQTVR 388
             P    +        ++  R
Sbjct: 194 LYPEDQTADLPARLLAAEITR 214


>gi|119468153|ref|ZP_01611279.1| HflX, putative GTPase subunit of protease with nucleoside triP
           hydrolase domain [Alteromonadales bacterium TW-7]
 gi|119448146|gb|EAW29410.1| HflX, putative GTPase subunit of protease with nucleoside triP
           hydrolase domain [Alteromonadales bacterium TW-7]
          Length = 427

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 85/251 (33%), Gaps = 27/251 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRIQ 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      ++    QG+          + ++G++NAGKS+LFN +   +V    D    T
Sbjct: 173 SIRARLQKVAVQREQGRRARNRNEIPTVSLVGYTNAGKSTLFNRITDSEV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            D     L+L     V ++DT G             K T  E   ADL L + +      
Sbjct: 232 LDPTLRKLELGDVGQVILADTVGFIRHLPHDLVAAFKATLTETREADLQLHVIDAADSRI 291

Query: 312 -----------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                      KEI    ++  + I  K D         D           +S+ TGEG 
Sbjct: 292 KENIEQVQSVLKEIE-ADDVPQLLIYNKIDALDNVAPRIDRDSEGQPIRVWLSAQTGEGC 350

Query: 352 EELINKIKSIL 362
           E L   I  +L
Sbjct: 351 ELLSEAISELL 361


>gi|126172808|ref|YP_001048957.1| GTP-binding protein, HSR1-related [Shewanella baltica OS155]
 gi|153002272|ref|YP_001367953.1| GTP-binding protein HSR1-like [Shewanella baltica OS185]
 gi|125996013|gb|ABN60088.1| GTP-binding protein, HSR1-related [Shewanella baltica OS155]
 gi|151366890|gb|ABS09890.1| GTP-binding protein HSR1-related [Shewanella baltica OS185]
          Length = 435

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 64/313 (20%), Positives = 113/313 (36%), Gaps = 34/313 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I      +     Q +      +   + ++G++NAGKS+LFNAL   DV    D    T
Sbjct: 173 NINKRLERVDKQREQSRRARKRSDLSTVSLVGYTNAGKSTLFNALTSSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
            D     LDL    V ++DT G             K T  E   A+L+L + +   +   
Sbjct: 232 LDPTLRKLDLPDGAVILADTVGFIRHLPHDLVAAFKATLQETRQAELLLHIIDCADENMA 291

Query: 312 ----------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLE 352
                     K+I   + +    +  K DL    T   ++          +S+    G +
Sbjct: 292 DNFDQVQSVLKDIEADEVMQL-VVCNKIDLLEDVTPRIEYNDIGKPVRVWVSAQKRLGFD 350

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL--- 409
            L+  I  ++    K+L   IP+   H  +L Q  R   +      D G  I++  L   
Sbjct: 351 LLLKAITELIGEVIKELTLRIPATAGH--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDA 408

Query: 410 ---RLASVSLGKI 419
              RLA  S G++
Sbjct: 409 DWRRLAKQSQGEL 421


>gi|306814136|ref|ZP_07448304.1| hypothetical protein ECNC101_18876 [Escherichia coli NC101]
 gi|305852501|gb|EFM52951.1| hypothetical protein ECNC101_18876 [Escherichia coli NC101]
          Length = 290

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHNMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSVRTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|331673511|ref|ZP_08374278.1| conserved hypothetical protein [Escherichia coli TA280]
 gi|331069322|gb|EGI40710.1| conserved hypothetical protein [Escherichia coli TA280]
          Length = 297

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 27  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 85

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 86  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 143

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 144 RHILHRGHQRVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TDAVFRLFRPVHP 201

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 202 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 257

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 258 ----DRIF 261


>gi|331266067|ref|YP_004325697.1| GTP-binding protein HflX [Streptococcus oralis Uo5]
 gi|326682739|emb|CBZ00356.1| GTP-binding protein HflX [Streptococcus oralis Uo5]
          Length = 412

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 101/266 (37%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNTLTSKIQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------- 309
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + +       
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 310 SKKEISFPKNIDFIFI-----GTKSDLYSTYTE-----EYDHLISSFTGEGLEE-LINKI 358
            K  +S  K++D   I       K+DL   +T            S  + E L+  L++KI
Sbjct: 296 EKTVLSIMKDLDMEDIPHLTLYNKADLVEDFTPTQTPYALISAKSKDSRENLQALLLDKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 356 KEIFEAFTLRVPFSKSYRIHDLESVA 381


>gi|301307317|ref|ZP_07213328.1| hypothetical protein HMPREF9347_05886 [Escherichia coli MS 124-1]
 gi|300837492|gb|EFK65252.1| hypothetical protein HMPREF9347_05886 [Escherichia coli MS 124-1]
          Length = 205

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 13/139 (9%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSD 330
           + I    +   +F+ T++D
Sbjct: 137 RHILQCGHQQVLFVVTQAD 155


>gi|119719759|ref|YP_920254.1| ferrous iron transport protein B [Thermofilum pendens Hrk 5]
 gi|119524879|gb|ABL78251.1| ferrous iron transport protein B [Thermofilum pendens Hrk 5]
          Length = 695

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 19/156 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ + G  N GKS+LFN L       V + PG T D    +++  G  ++  D  G   
Sbjct: 5   VRVALAGAPNVGKSTLFNVLVGAHR-FVGNWPGKTVDRYEGEVEHHGVRIRFIDLPGTYS 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK-----EISFPKNIDFIFIG-TKSDL-- 331
                E+E I R F+  E  D ++++    S +      +   +  D + I   K D+  
Sbjct: 64  LSAQSEEEEIARDFIVNEKPDTVIVVVNAVSMETTMYLALQVLELYDKVVIAVNKIDVAA 123

Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINK 357
                      S         IS+    GL EL+  
Sbjct: 124 KMGVHIHVERLSRLLGVPVVPISALKKTGLHELLEA 159


>gi|313616436|gb|EFR89359.1| tRNA modification GTPase MnmE [Listeria innocua FSL S4-378]
          Length = 49

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 4  EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF 44
          E +TI A+ST     AI+IIRLSGP   Q+ + I   K   
Sbjct: 2  EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSL 42


>gi|289550899|ref|YP_003471803.1| GTP-binding protein HflX [Staphylococcus lugdunensis HKU09-01]
 gi|289180431|gb|ADC87676.1| GTP-binding protein HflX [Staphylococcus lugdunensis HKU09-01]
          Length = 412

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 100/265 (37%), Gaps = 25/265 (9%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRAKSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRI 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      I  H  + +        ++I ++G++NAGKSS FN L+ +      ++   
Sbjct: 180 NEIKHQLQTIVEHRERYRNKREQNQVFQIALVGYTNAGKSSWFNVLSGES-TYEQNLLFA 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T  + L EG+ V I+DT G  +          K T  E +NAD++L + + +  +
Sbjct: 239 TLDPKTRQIQLNEGFNVIITDTVGFIQKLPTTLVAAFKSTLEEAKNADILLHIVDASHPE 298

Query: 313 ------------EISFPKNIDFIFIGTKSDLYST-----YTEEYDHLISSFTGEGLEE-- 353
                       +      I  + +  K DL  +      +      IS+     + +  
Sbjct: 299 FRSQYETVNQLIQELDMDQIPQVVLFNKRDLCPSTMALPMSSSLFEFISTQHHSDITKVK 358

Query: 354 --LINKIKSILSNKFKKLPFSIPSH 376
             LI +IK  L+   + +  S    
Sbjct: 359 ALLIKQIKESLTYYSETVASSNAQR 383


>gi|220904152|ref|YP_002479464.1| GTP-binding proten HflX [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868451|gb|ACL48786.1| GTP-binding proten HflX [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 561

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 83/209 (39%), Gaps = 24/209 (11%)

Query: 188 SSKEVLNDILFLKNDISSHISQ--GKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDV 244
             +++   +  ++ D+     Q         R G  +  ++G++NAGKS+L N L + +V
Sbjct: 349 DRRKIRERMARIRKDLERLRRQRAFTRDRRSRQGIPLAALVGYTNAGKSTLLNTLTRSEV 408

Query: 245 AIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V +    T D  T  L       + ++DT G          +  + T  E+E A L+L
Sbjct: 409 -LVENKLFATLDPTTRRLRFPAEKELILADTVGFIRNLPKELMDAFRATLEELEAAHLLL 467

Query: 304 LLKEINSKKEISFP------------KNIDFIFIGTKSD-----LYSTYTEEYDH--LIS 344
            + + +    +                 +  + I  K D       +   + + H   ++
Sbjct: 468 HVADASHPDLLQQISAVETILAEMELDRMPRLLILNKWDQLEAPARAELADAFPHALPVA 527

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSI 373
           + TGEG + L+ +++  L ++   +   I
Sbjct: 528 AKTGEGCKPLLEQLEMRLLHQATNIVTEI 556


>gi|331222340|ref|XP_003323844.1| hypothetical protein PGTG_05746 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309302834|gb|EFP79425.1| hypothetical protein PGTG_05746 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 152

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 110 PGEFSRRAFE--NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167
           P      A++  +G  D+ +   L  LI +E E QR  ++   + +    Y Q   KL  
Sbjct: 13  PSRDWLYAYDRAHGSTDINKILGLKHLIKAEAEEQRSWAVSEFNSKFDHTYQQMQKKLKQ 72

Query: 168 IRSFIEADLDFSEEEDVQNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
             +  EA +DFSE+  + +    K+V++ +L L+  I++ +SQ K  + I  G K+ + G
Sbjct: 73  SIALCEAIIDFSEDGSMDDLEIWKQVIDHLLDLQTAINTQLSQSKQRKKISMGIKVSLYG 132

Query: 227 HSN 229
             N
Sbjct: 133 SPN 135


>gi|57864890|gb|AAW57064.1| iron(II)transporter [cyanobacterium endosymbiont of Rhopalodia
           gibba]
          Length = 210

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS LFN L       V++ PGTT D+      + G  V I DT G+    
Sbjct: 44  IALVGSPNVGKSLLFNLLTGS-YTTVSNYPGTTVDISKGQAIISGQTVSIIDTPGMYSLI 102

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
            + E+E   R FL  E+ DL++ + + 
Sbjct: 103 PMTEEEQCSRDFLLTESIDLVIHVIDA 129


>gi|307136928|ref|ZP_07496284.1| hypothetical protein EcolH7_02203 [Escherichia coli H736]
 gi|323938805|gb|EGB35051.1| hypothetical protein ERCG_00058 [Escherichia coli E1520]
          Length = 290

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +      +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDVAGIQPSPAQARNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELCTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|255311185|ref|ZP_05353755.1| GTP binding protein [Chlamydia trachomatis 6276]
 gi|255317486|ref|ZP_05358732.1| GTP binding protein [Chlamydia trachomatis 6276s]
          Length = 447

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 95/265 (35%), Gaps = 23/265 (8%)

Query: 135 ISSETEMQRRLSM-EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           +++E  +Q  L+    +   L  ++G    + +          +  ++ ++     +E +
Sbjct: 141 LTAEAGLQVELAQARYLLPRLKRMWGHLSRQKSGGSGGGFVKGEGEKQIELDRRIVRERI 200

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           + +     ++     + +  +         ++G++N+GKS+L N L   D   V +    
Sbjct: 201 HKLSRDLKNVERQREERRKAKKRNQIPTFALIGYTNSGKSTLLNLLTSAD-TYVENKLFA 259

Query: 254 TRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T    L  G  V ++DT G             K T       D++L + + +   
Sbjct: 260 TLDPKTRRCVLPCGQRVLLTDTVGFIRKLPHTLVAAFKSTLEAALQEDILLHVVDASHPL 319

Query: 313 EISFPK------------NIDFIFIGTKSDLYS--------TYTEEYDHLISSFTGEGLE 352
            +   +                I +  K D  +                 +S+ TGEG+ 
Sbjct: 320 ALEHVETTKAILQELGITQPQVITVLNKIDKVADGVTASRLRLMSPNPVCVSAKTGEGIR 379

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK 377
           EL+  ++ ++  ++ +    +P  +
Sbjct: 380 ELLRSMEDMVQEEYPQATLHLPYKE 404


>gi|308235186|ref|ZP_07665923.1| GTP-binding protein Era [Gardnerella vaginalis ATCC 14018]
 gi|311114841|ref|YP_003986062.1| GTP-binding protein Era [Gardnerella vaginalis ATCC 14019]
 gi|310946335|gb|ADP39039.1| GTP-binding protein Era [Gardnerella vaginalis ATCC 14019]
          Length = 354

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            + ED+++ + +   N    LK  +     +       ++G+ + ++G  N GKS+L NA
Sbjct: 12  DDMEDMEDMNDEMFANLDPSLKASV-----EVPDFNGYKSGF-VAVVGRPNVGKSTLMNA 65

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           L    +AI +  P TTR  +   L      + + DT GI     ++ +         + +
Sbjct: 66  LIGTQIAIASSRPETTRKAIRGILTTPNAQMVLVDTPGIHRPRTLLGQRLNDIVDESLAD 125

Query: 299 ADLILLLKEINSK 311
            D I  L   + +
Sbjct: 126 VDAIAFLLPADQE 138


>gi|18977229|ref|NP_578586.1| ferrous iron transport protein b [Pyrococcus furiosus DSM 3638]
 gi|18892890|gb|AAL80981.1| ferrous iron transport protein b [Pyrococcus furiosus DSM 3638]
          Length = 663

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 73/189 (38%), Gaps = 23/189 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G+ N GK+++FNAL       V + PG T +     ++       + D  GI    
Sbjct: 5   VALVGNPNVGKTTIFNALTGL-RQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLT 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYST 334
                E I R F+   NAD+I+ + +            E+   +  + I +  K DL   
Sbjct: 64  AHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKK 123

Query: 335 YTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH---KRH 379
              + D               ++  GEG+EEL   I  +   K    P         +R 
Sbjct: 124 KGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIERE 183

Query: 380 LYHLSQTVR 388
           + H+S+ +R
Sbjct: 184 IKHISELLR 192


>gi|113477622|ref|YP_723683.1| HSR1-related GTP-binding protein [Trichodesmium erythraeum IMS101]
 gi|110168670|gb|ABG53210.1| GTP-binding protein, HSR1-related [Trichodesmium erythraeum IMS101]
          Length = 574

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 74/187 (39%), Gaps = 26/187 (13%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           N + +H S+ +     +    + I+G++NAGKS+L N L   +V    D    T D +T 
Sbjct: 383 NQLQAHRSRLRQHRQHQEVPTVAIVGYTNAGKSTLLNTLTNSEV-YAADKLFATLDPITR 441

Query: 261 DLDLEG------YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
            L++          + I+DT G             + T  EV +AD +L + +++     
Sbjct: 442 RLNVPDTVTGKPTTIVITDTVGFIHELPPTLMNAFRATLEEVTDADALLHVVDLSHPAWQ 501

Query: 315 SFPKNIDFIFIG------------TKSDLYSTYTEEYDH-------LISSFTGEGLEELI 355
           S  +++  I                K D     T ++ H        IS+    GLE L 
Sbjct: 502 SQIRSVMTILQEMPETPGPALVAFNKIDEVDGDTLKFAHEEYPMAVFISAAKALGLETLR 561

Query: 356 NKIKSIL 362
            ++  ++
Sbjct: 562 QRLAQLI 568


>gi|237724296|ref|ZP_04554777.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229437484|gb|EEO47561.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 417

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 15/195 (7%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q       R    ++ ++G++N GKS+L N L+K +V
Sbjct: 181 EMDRRIILNRMSLLKERLAEIDKQKSTQRKNRGRMIRVALVGYTNVGKSTLMNLLSKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + +E     ++DT G          +  K T  EV  ADL++ 
Sbjct: 241 -FAENKLFATLDTTVRKVIIENLPFLLTDTVGFIRKLPTDLVDSFKSTLDEVREADLLIH 299

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGL 351
           + +I+    +++IS                + +  K D Y+   + E D    +     L
Sbjct: 300 VVDISHPDFEEQISVVDKTIADLEAGGKPTMIVFNKVDAYTYVEKAEDDLTPKTRENITL 359

Query: 352 EELINKIKSILSNKF 366
           EEL+    + L++  
Sbjct: 360 EELMKTWMAKLNDNC 374


>gi|325968434|ref|YP_004244626.1| GTP-binding protein HSR1-related protein [Vulcanisaeta moutnovskia
           768-28]
 gi|323707637|gb|ADY01124.1| GTP-binding protein HSR1-related protein [Vulcanisaeta moutnovskia
           768-28]
          Length = 387

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 98/214 (45%), Gaps = 31/214 (14%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG----YKIVILGHSNAGKS 233
           +   E       + ++  I  ++ ++++ I + +   +IR       ++ + G+++AGK+
Sbjct: 162 YGGGEYAIEAYYRYMMRRIAHIRRELNA-IKRRRESLVIRRKDYGLPQVALTGYTSAGKT 220

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           +LFN L K++   V   P  T D  +  ++  G    ++DT G  +    +  E    T 
Sbjct: 221 TLFNRLTKENK-YVDGKPFATLDTYSRLVNFNGVNAILTDTIGFIDDIPPLLIESFYATI 279

Query: 294 LEVENADLILLLKEIN------SKKEISFPKNID--------FIFIGTKSDLYS--TYTE 337
            EV NADLIL + +++      S+K +S  K  +         + I  K DL +    T+
Sbjct: 280 AEVLNADLILFMLDVSDDYQEFSRKFVSSAKIFNDLGISRTSVLPILNKIDLTNGIDITD 339

Query: 338 EYDHLISSFT---------GEGLEELINKIKSIL 362
           + + + S F+         G G+++L N I+S L
Sbjct: 340 KLNLVESEFSNYVIISAKAGIGIDDLKNAIRSRL 373


>gi|1228147|gb|AAA92441.1| Era [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 301

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 67/189 (35%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L  + ++I +    TTR  L++    + Y     DT G+   +
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGRKISITSRKAQTTRHALSVCHTEDPYQAIYVDTPGLHMEE 70

Query: 282 D--IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------DFIFIGTKSD--- 330
               + +   K     + + +L++ ++      +     N         I    K D   
Sbjct: 71  KRLAINRLMNKAASSSIGDVELVIFVEGTRWTPDDEMVLNKLRDGKAPVILAVNKVDNVQ 130

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L S         IS+ TG  ++ +   ++  L       P    + +  
Sbjct: 131 EKVDLLPHLQFLASQMNFPDIVPISAETGMNVDTIAGIVRKHLPEAIHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|255593008|ref|XP_002535771.1| GTP-binding protein enga, putative [Ricinus communis]
 gi|223522018|gb|EEF26612.1| GTP-binding protein enga, putative [Ricinus communis]
          Length = 236

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 29/163 (17%)

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLK 306
           +PGTTRD + ID + +G    + DTAG+R      + +EK  + +T   +E+A++++L+ 
Sbjct: 1   MPGTTRDSIHIDFERDGKQYTLVDTAGVRRRGKVFEAIEKFSVIKTLQAIEDANVVVLVL 60

Query: 307 EIN--------SKKEISFPKNIDFIFIGTKSD-----LYSTYTEEYD-----------HL 342
           +          S            +    K D           ++ D           H 
Sbjct: 61  DAQDTITEQDGSLAAFVLETGRALVVAINKWDGLKEEQRDQVKKDIDRKLHFLTYAKFHY 120

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           +S+  G+GL  L+  + +  +    KL    P   R L    Q
Sbjct: 121 LSALKGQGLPPLMKSVDAAYAAAMSKLST--PKLTRVLEAAVQ 161


>gi|227549102|ref|ZP_03979151.1| HflX family GTP-binding protein [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078831|gb|EEI16794.1| HflX family GTP-binding protein [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 496

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 86/223 (38%), Gaps = 32/223 (14%)

Query: 186 NFSSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
               + +  D+  L++++       + K     R+   KI I G++NAGKSSL NA+   
Sbjct: 232 EADRRRLRTDMAKLRHELRGMKTAREVKRARRQRSTIPKIAIAGYTNAGKSSLINAMTNA 291

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +V D    T D  T    L +G  V ++DT G          E  K T  EV  ADL
Sbjct: 292 GV-LVEDALFATLDPSTRKAQLADGRNVVLTDTVGFVRHLPTQLVEAFKSTLEEVTGADL 350

Query: 302 ILLLKEINSK---KEISFPKN-------------IDFIFIGTKSDLYSTY---------- 335
           +L + + +     K+I                     I +  K D               
Sbjct: 351 MLHVVDGSDAFPLKQIEAVNKVLSDVTRESGESIPPEIVVVNKIDQADPVVLAELRHTFD 410

Query: 336 -TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            T      +S+ TGEG+ EL  KI+  L++    +   +P  +
Sbjct: 411 NTGHDVVFVSAHTGEGIAELEGKIEMHLNSVEAHVQMLVPFTR 453


>gi|157363426|ref|YP_001470193.1| ferrous iron transport protein B [Thermotoga lettingae TMO]
 gi|157314030|gb|ABV33129.1| ferrous iron transport protein B [Thermotoga lettingae TMO]
          Length = 639

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 19/172 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ + G+ N GK+SLFNAL         +  G T D+     + +G  +  +D  G   
Sbjct: 3   LRVALCGNPNVGKTSLFNALTGL-RQYTANWAGVTVDIKEGIRNWKGMQITFTDLPGTYS 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                  E I R +L     D++L++ +  S K+       +   ++  I +    D   
Sbjct: 62  LSSFSLDEKIARDYLLYNTPDILLVVADSLSLKQGLYLFLEAAELDVKIILVVNAIDEAK 121

Query: 334 TYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                 D             L S+ TGEG+ EL++ I  + +++ K + F++
Sbjct: 122 KSGIHIDRSELSKHLGVPVILTSAVTGEGINELLDSIVKVAADQKKTVRFAL 173


>gi|288932809|ref|YP_003436869.1| small GTP-binding protein [Ferroglobus placidus DSM 10642]
 gi|288895057|gb|ADC66594.1| small GTP-binding protein [Ferroglobus placidus DSM 10642]
          Length = 354

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 72/202 (35%), Gaps = 14/202 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNG----------YKIVILGHSNAGKSSLFNALAKKDVAIV 247
            LK  ++    + +     ++G            +V++G+ + GKS+L NAL     + V
Sbjct: 29  RLKAKLARLREEAEKQRRKKSGEAYAIKKEGDATVVLVGYPSVGKSTLLNALTGA-KSEV 87

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            D   TT       L+ +G  ++I D  G+ E        G +     +  ADLI+++ +
Sbjct: 88  ADYAFTTLKPTPGMLEYKGAKIQIIDVPGVIEGASQGRGRGRE-ILSAIRVADLIVIVAD 146

Query: 308 INSKKEISFPKN--IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           + +   I   K    +  F   +        +     I+  T   L      IKSIL   
Sbjct: 147 VFNVHTIDLVKKELYNAGFRLNEKKPEVYIKKTVTGGINVKTTVKLSLSEETIKSILREY 206

Query: 366 FKKLPFSIPSHKRHLYHLSQTV 387
                  +      +  L   +
Sbjct: 207 KIHSGEVLIREDVTIDRLIDAI 228


>gi|47600617|emb|CAE55738.1| hypothetical protein YeeP [Escherichia coli Nissle 1917]
          Length = 303

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 65/273 (23%), Positives = 112/273 (41%), Gaps = 30/273 (10%)

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+    +    + E +   L  L   +S HI +  L ++  +   I I+G S AGKSSL 
Sbjct: 8   FTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLC 66

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLE 295
           NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ D   E E + R    
Sbjct: 67  NALFQGEVTPVSDVHAGTREVRRFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDI-- 124

Query: 296 VENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           +   DL+L L + + +         + I    +   +F+ T++D  +    E+D      
Sbjct: 125 LPELDLVLWLIKADDRALSVDEYFWRHILHRGHQRVLFVVTQAD-KTEPCHEWDMAGIKP 183

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402
           +    + +  K    L   F+ +   +    R  + L   V  L  A  +     L    
Sbjct: 184 SPAQAQNIREK-TEALFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRL 242

Query: 403 -D-IIAENLRLASVSLGKITGCVDVEQLLDIIF 433
            D +  E++R  +    + TG V      D IF
Sbjct: 243 QDGLRTESVRSQARE--QFTGAV------DRIF 267


>gi|327191435|gb|EGE58458.1| GTP-binding protein [Rhizobium etli CNPAF512]
          Length = 441

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 31/225 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + I+ L+ ++   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 166 EADRRLLQDRIIKLERELEQVVRTRQLHRAKRRKVPHPIVALVGYTNAGKSTLFNRITGA 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 226 GV-LAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISDLPTHLVAAFRATLEEVLEADL 284

Query: 302 ILLLKEINSKKEISFPKNIDFIF----------------IGTKSDLYSTYTEEY------ 339
           IL +++++     +   ++  I                 +  K D       +       
Sbjct: 285 ILHVRDMSDPDNQAQSSDVMRILGDLGIDEAEAGKRLIEVWNKIDRLEPEVHDAMVQKAA 344

Query: 340 ----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                  +S+ +GEG++ L+++I   LS    +    +P  K  L
Sbjct: 345 GASNVVAVSAVSGEGVDTLMDEISRRLSGVMTETTIRLPVDKLAL 389


>gi|326560590|gb|EGE10971.1| GTP-binding protein Era [Moraxella catarrhalis 103P14B1]
 gi|326573971|gb|EGE23921.1| GTP-binding protein Era [Moraxella catarrhalis O35E]
 gi|326574963|gb|EGE24893.1| GTP-binding protein Era [Moraxella catarrhalis 101P30B1]
          Length = 331

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 37/239 (15%)

Query: 200 KNDISSHIS--QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
           ++ IS+          E  R G+ + I+G  N GKS+L N +  + ++I +  P TTR  
Sbjct: 11  EDTISAFFENRSTPKNESFRAGF-VAIVGRPNVGKSTLMNHMLGQKLSITSRKPQTTRHR 69

Query: 258 LTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           +   L  E   +   DT GI   +   + +   K          L  +   +     I +
Sbjct: 70  IHGILTDEDRQIVFVDTPGIHSKEVRAINERMNKAAISA-----LADVDVVLFVVDGIQW 124

Query: 317 PK------------NIDFIFIGTKSD----------LYSTYTEEYDH----LISSFTGEG 350
            +            N+  I +  K+D          +  +++E +D      +S+     
Sbjct: 125 REDDLLTLEKLSVTNLPVILVINKADTVKDKSKLLPVIESFSESFDFADIIPVSALRRHN 184

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI-IAEN 408
           L+ L + I   L  +         + +   +  S+ +R  ++  ++  +   D+ +  +
Sbjct: 185 LDRLQSVIGEYLPIRPAIFDAEQITDRSERFLASEIIRE-KIMRISGDEVPYDLTVQID 242


>gi|282849486|ref|ZP_06258870.1| small GTP-binding protein domain protein [Veillonella parvula ATCC
           17745]
 gi|282580423|gb|EFB85822.1| small GTP-binding protein domain protein [Veillonella parvula ATCC
           17745]
          Length = 456

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 6/146 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKS+L N L  + V++V+D+ GTT D ++  +++     V I+DTAG
Sbjct: 8   NRIHIGFFGRCNAGKSTLINMLTDQPVSLVSDVAGTTTDPVSKSMEILPLGPVVITDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336
           I +T ++      ++T   ++  +L + +  + + +E +         +   +   + + 
Sbjct: 68  IDDTTELGTLRM-EKTEEVLKKINLAVYV--LRTDEEPTSDDMHWLGLLKQNNVPIALFI 124

Query: 337 EEYD--HLISSFTGEGLEELINKIKS 360
            E +            ++EL   I  
Sbjct: 125 NEINSTKFDKHLYKNDMDELKENIVK 150


>gi|260845837|ref|YP_003223615.1| hypothetical protein ECO103_3763 [Escherichia coli O103:H2 str.
           12009]
 gi|257760984|dbj|BAI32481.1| hypothetical protein ECO103_3763 [Escherichia coli O103:H2 str.
           12009]
          Length = 290

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTRKVRCFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +      +  K +++        P 
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQARNIREKTEAVFRLFRPAHPV 195

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 196 -VAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|237708863|ref|ZP_04539344.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|265755877|ref|ZP_06090344.1| GTP-binding protein HflX [Bacteroides sp. 3_1_33FAA]
 gi|229457289|gb|EEO63010.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263233955|gb|EEZ19556.1| GTP-binding protein HflX [Bacteroides sp. 3_1_33FAA]
          Length = 417

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 15/195 (7%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q       R    ++ ++G++N GKS+L N L+K +V
Sbjct: 181 EMDRRIILNRMSLLKERLAEIDKQKSTQRKNRGRMIRVALVGYTNVGKSTLMNLLSKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + +E     ++DT G          +  K T  EV  ADL++ 
Sbjct: 241 -FAENKLFATLDTTVRKVIIENLPFLLTDTVGFIRKLPTDLVDSFKSTLDEVREADLLIH 299

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGL 351
           + +I+    +++IS                + +  K D Y+   + E D    +     L
Sbjct: 300 VVDISHPDFEEQISVVDKTIADLEAGGKPTMIVFNKVDAYTYVEKAEDDLTPKTRENITL 359

Query: 352 EELINKIKSILSNKF 366
           EEL+    + L++  
Sbjct: 360 EELMKTWMAKLNDNC 374


>gi|228940781|ref|ZP_04103342.1| hypothetical protein bthur0008_34230 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973700|ref|ZP_04134280.1| hypothetical protein bthur0003_34560 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980258|ref|ZP_04140570.1| hypothetical protein bthur0002_34270 [Bacillus thuringiensis Bt407]
 gi|228779490|gb|EEM27745.1| hypothetical protein bthur0002_34270 [Bacillus thuringiensis Bt407]
 gi|228786023|gb|EEM34022.1| hypothetical protein bthur0003_34560 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818896|gb|EEM64960.1| hypothetical protein bthur0008_34230 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326941414|gb|AEA17310.1| GTP-binding protein hflX [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 424

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 110/320 (34%), Gaps = 35/320 (10%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        ++I
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQI 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + +     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAN-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      I   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKRLLSELEINHIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           D     +  + +    + S+F    +  +   I+  +  +  +    IP  +  L  L +
Sbjct: 319 DELHQNFIPFPKSDFLMTSAFEESDVLRIKEAIEMKMKKEMDRYRVEIPPSEGKLLTLLK 378

Query: 386 TVRYLEMASLNEKDCGLDII 405
           T   L      E     D  
Sbjct: 379 TETILAKMEFLEDKFVYDCA 398


>gi|309357020|emb|CAP36636.2| hypothetical protein CBG_19372 [Caenorhabditis briggsae AF16]
          Length = 1390

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 90/246 (36%), Gaps = 26/246 (10%)

Query: 138  ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
              E Q ++++  +   + +       K  H R  I   ++    E V+   ++ +     
Sbjct: 1081 TDEAQLQIALAEIP-YIKNRIHALSSKRLHSRPEIL-HIEQQYAE-VEGDLNEILRKREQ 1137

Query: 198  FLKNDISSHISQGKLGEIIRN--GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
             L+ D+     +       +N     + ++G++NAGK+SL   L         +    T 
Sbjct: 1138 DLRRDLKELTRKSSESIKSKNSSDAVVAVVGYTNAGKTSLVKRLTGASSLTPKNQLFATL 1197

Query: 256  DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
            D       L  G     +DT G      +      + T   V++AD+I+ L+++++    
Sbjct: 1198 DTTRHVAKLPSGRSAVFTDTIGFLSDLPMHLISAFEATLAHVKSADVIIHLRDVSNPDWK 1257

Query: 312  ----------KEISFPKN---IDFIFIGTKSDLYSTYTEE----YDHLISSFTGEGLEEL 354
                      K I   +N      I +  K D                IS  TG+G+++L
Sbjct: 1258 AQEEDVVATLKSIGVAENVLTERMITVDNKIDKEGVENIADATTKSIRISCKTGDGMQDL 1317

Query: 355  INKIKS 360
            I++I  
Sbjct: 1318 IDRINQ 1323


>gi|297584121|ref|YP_003699901.1| GTP-binding proten HflX [Bacillus selenitireducens MLS10]
 gi|297142578|gb|ADH99335.1| GTP-binding proten HflX [Bacillus selenitireducens MLS10]
          Length = 419

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 94/216 (43%), Gaps = 17/216 (7%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +V     ++ ++DI      +  H ++ +        ++I ++G++NAGKS+L N L++ 
Sbjct: 163 EVDQRHIRQRMDDIKSQLEQVVRHRTRYRERRKRNQAFQIALVGYTNAGKSTLLNRLSQA 222

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV  V D    T D  T  + L  G  V +SDT G  +          + T  EV  AD 
Sbjct: 223 DVM-VEDQLFATLDPTTKKIRLPKGMDVLLSDTVGFIQQLPTTLIAAFRSTLEEVTGADF 281

Query: 302 ILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYS---TYTEEYDHLISSF 346
           I+ + + + +  ++              ++I  + +  K DL             L+S+ 
Sbjct: 282 IVHVVDASHEDAVNHEESVNRLLDDLDAQHIPRLTVYNKRDLIQGDFFALSTPSLLLSTM 341

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           + + ++  +NK++  + + F     S+ +++  L H
Sbjct: 342 SDDDIQRFLNKLEQTIEDAFVPYQVSVQAYEGKLLH 377


>gi|291549374|emb|CBL25636.1| GTP-binding protein HflX [Ruminococcus torques L2-14]
          Length = 411

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 111/283 (39%), Gaps = 33/283 (11%)

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           A  +S E ++Q  L+        +S        L+ +   I       ++ ++     +E
Sbjct: 114 ARAVSGEGKIQVELAQLKYR---ASRLAGLGKSLSRLGGGIGTRGPGEKKLEMDRRLIRE 170

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAK----KDVAI 246
            ++ +     D+  H  +   G+  ++G K+  ++G+++AGKSS+ NAL +    +D  +
Sbjct: 171 RISRLKKELKDVERH-RELIRGQRKQSGLKVAALVGYTSAGKSSIENALTQAGVLEDAML 229

Query: 247 VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            + +  TTR      L L+    + ++DT G          E  K T  E + AD+I+ +
Sbjct: 230 FSTLDTTTR-----ALTLDNTQEILLTDTVGFINKLPHHLVEAFKSTLEEAKYADIIVHV 284

Query: 306 KEINSKKEISF------------PKNIDFIFIGTKSDLYST------YTEEYDHLISSFT 347
            + ++ +  +              +    I +  K D             +Y    S+ T
Sbjct: 285 VDASNPQMDAQMHVVYETLRQLGAEGKPVITLFNKQDKVENPVNHKDLQADYSIATSAKT 344

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
           G+GLEE  + +  I+  +   +       +     L ++   L
Sbjct: 345 GQGLEEFKHALLEIIRKEQIYIERLYDFSEAGKIQLIRSKGQL 387


>gi|157161492|ref|YP_001458810.1| putative GTPase [Escherichia coli HS]
 gi|157067172|gb|ABV06427.1| putative GTPase [Escherichia coli HS]
          Length = 290

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|313893454|ref|ZP_07827024.1| hydrogenase maturation GTPase HydF [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313441897|gb|EFR60319.1| hydrogenase maturation GTPase HydF [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 433

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKS+L N L  + V++V+D+ GTT D ++  +++     V I+DTAG
Sbjct: 8   NRVHIGFFGRCNAGKSTLINMLTDQPVSLVSDVAGTTTDPVSKSMEILPLGPVVITDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           I +T ++      ++T   V+  +L + +   + + 
Sbjct: 68  IDDTTELGALRM-EKTEEVVKKINLAVYVLRTDEEP 102


>gi|110640536|ref|YP_668264.1| hypothetical protein ECP_0331 [Escherichia coli 536]
 gi|191171299|ref|ZP_03032849.1| putative GTPase [Escherichia coli F11]
 gi|28316254|emb|CAD66199.1| hypothetical protein [Escherichia coli]
 gi|110342128|gb|ABG68365.1| hypothetical protein ECP_0331 [Escherichia coli 536]
 gi|190908599|gb|EDV68188.1| putative GTPase [Escherichia coli F11]
          Length = 290

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILQRGHQQVLFVVTQAD-KTEPCHEWDVAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|119511840|ref|ZP_01630940.1| GTP-binding protein [Nodularia spumigena CCY9414]
 gi|119463482|gb|EAW44419.1| GTP-binding protein [Nodularia spumigena CCY9414]
          Length = 521

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           + +  + ++ ++ +    N + +H S+ +L    +    + ++G++NAGKS+L NAL   
Sbjct: 311 ETERRAIQKRISRLQQEVNQLQAHRSRLRLRRQNQEVPSVALVGYTNAGKSTLLNALTNA 370

Query: 243 DVA----IVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +V     +   +  TTR ++  D D  G   + ++DT G          +  + T  EV 
Sbjct: 371 EVYTADQLFATLDPTTRRLVIADGDTGGTQEILLTDTVGFIHELPASLMDAFRATLEEVT 430

Query: 298 NADLILLLKEINSKKEISFPKNI------------DFIFIGTKSDLYSTYT-----EEYD 340
            AD +L L +++    +S  +++              + I  K D   + T     EE+ 
Sbjct: 431 EADALLHLVDLSHPAWLSHIRSVREILAQMPVTPGPALVIFNKIDQVDSATLAIAQEEFP 490

Query: 341 --HLISSFTGEGLEELINKIKSILS 363
               IS+    GLE L  ++  ++ 
Sbjct: 491 LAVFISASQRLGLETLRQRLTKLIQ 515


>gi|212693698|ref|ZP_03301826.1| hypothetical protein BACDOR_03218 [Bacteroides dorei DSM 17855]
 gi|212663757|gb|EEB24331.1| hypothetical protein BACDOR_03218 [Bacteroides dorei DSM 17855]
          Length = 417

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 15/195 (7%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q       R    ++ ++G++N GKS+L N L+K +V
Sbjct: 181 EMDRRIILNRMSLLKERLAEIDKQKSTQRKNRGRMIRVALVGYTNVGKSTLMNLLSKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + +E     ++DT G          +  K T  EV  ADL++ 
Sbjct: 241 -FAENKLFATLDTTVRKVIIENLPFLLTDTVGFIRKLPTDLVDSFKSTLDEVREADLLIH 299

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGL 351
           + +I+    +++IS                + +  K D Y+   + E D    +     L
Sbjct: 300 VVDISHPDFEEQISVVDKTIADLEAGGKPTMIVFNKVDAYTYVEKAEDDLTPKTRENITL 359

Query: 352 EELINKIKSILSNKF 366
           EEL+    + L++  
Sbjct: 360 EELMKTWMAKLNDNC 374


>gi|159026057|emb|CAO86298.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 522

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 106/262 (40%), Gaps = 40/262 (15%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISS--HISQGKLGEI--IRNGYKIVILGHSNAGKSSL 235
           E+ +    + K +   +  +++ ++    I++ +  E    R   KI++ G  +AGK+SL
Sbjct: 90  EKTEAAGETLKAIRQQVEQIQDKVTQQVFINRSQEIERSLARKEVKIIVFGTGSAGKTSL 149

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTF 293
            NAL  + V  V    GTT    T  L ++G    ++I+DT GI E      +   +   
Sbjct: 150 INALIGQMVGNVEATMGTTEKGETYSLKMKGVNREIQITDTPGILEIGAAGGQRE-QLAR 208

Query: 294 LEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
                ADL+L + + + ++    P           + +  K DLYS    E         
Sbjct: 209 QLATEADLLLFVIDNDIRQSEYGPLLGLIDIGKRSLLVFNKIDLYSDEDREMI------- 261

Query: 348 GEGLEELINKIKSIL-----------SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
              L++L  ++K ++               +     I + +  +  L + +  +  A   
Sbjct: 262 ---LKQLRERLKGVILSADIIAVTANPQPVQLTGGQIITPEPDILALIKRLASVLRAE-- 316

Query: 397 EKDCGLDIIAENLRLASVSLGK 418
               G D++A+N+ L S  LG+
Sbjct: 317 ----GEDLVADNILLQSQRLGE 334


>gi|148272752|ref|YP_001222313.1| GTP-binding protein Era [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830682|emb|CAN01622.1| GTP-binding protein, era family [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 350

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 78/207 (37%), Gaps = 25/207 (12%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
             R G+ +  +G  N GKS+L NAL  + VAI +  P TTR  +   +      + + DT
Sbjct: 57  AYRAGF-VSFVGRPNVGKSTLTNALVGEKVAITSSKPQTTRKAIRGIVHRPDGQLILVDT 115

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIF 324
            GI     ++ +         + + D+I L    + +          +   +P+      
Sbjct: 116 PGIHRPRTLLGERLNALVQTTLGDVDVIGLCIPADERIGPGDRFINEQLDEYPRARKIAI 175

Query: 325 IGTKSDLYSTYT-------------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + TK+D  S +               +    +S+     L+ L+ ++   L    +  P 
Sbjct: 176 V-TKTDSASRHAVAEQLLAVQELRDWDAIVPVSAVEAIQLDALVGELLKALPVSEQLYPS 234

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEK 398
              + +     +S+ +R   +  + ++
Sbjct: 235 DAVTEEGLEARISELIREAALEGVQDE 261


>gi|323344483|ref|ZP_08084708.1| GTP-binding protein HflX [Prevotella oralis ATCC 33269]
 gi|323094610|gb|EFZ37186.1| GTP-binding protein HflX [Prevotella oralis ATCC 33269]
          Length = 414

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 17/196 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  +  LK  +   I + K  +    G   ++ ++G++N GKS++ N LAK +
Sbjct: 181 EMDRRIILQRMSLLKRRLEE-IDKQKTTQRKNRGRMIRVALVGYTNVGKSTIMNLLAKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     ++DT G          +  K T  EV  ADL+L
Sbjct: 240 V-FAENKLFATLDTTVRKVVVDNLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLL 298

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYS-TYTEEYDHLISSFTGEG 350
            + +I+    +++I+  +N            + +  K D Y     EE D    +     
Sbjct: 299 HVVDISHPDFEEQITVVENTLKELGCAEKPSMIVFNKIDNYKWVEKEEDDLTPMTKENVT 358

Query: 351 LEELINKIKSILSNKF 366
           L+EL     + L+   
Sbjct: 359 LDELKRTWMARLNENC 374


>gi|296242943|ref|YP_003650430.1| small GTP-binding protein [Thermosphaera aggregans DSM 11486]
 gi|296095527|gb|ADG91478.1| small GTP-binding protein [Thermosphaera aggregans DSM 11486]
          Length = 689

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  N GKSSLF AL   DV I  + PGTT + +   +  +G  +++ D  GI  
Sbjct: 3   VRVALIGQPNVGKSSLFKALTGGDVMI-ANWPGTTVERVEGVVKYKGREIRLIDLPGIYG 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS---------- 329
                 +E + R ++       +++L +    +   +         G             
Sbjct: 62  FSATTLEEKLSREYILSGEPHAVVVLVDATLPERTLYLAVEALELTGNVIVAFTKTDLSH 121

Query: 330 --------DLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                   DL  +  +      S     GL  L+ KI  
Sbjct: 122 SYGIHINYDLIQSRLKAPVVATSIVDDRGLRTLLEKILE 160


>gi|271502152|ref|YP_003335178.1| GTP-binding proten HflX [Dickeya dadantii Ech586]
 gi|270345707|gb|ACZ78472.1| GTP-binding proten HflX [Dickeya dadantii Ech586]
          Length = 433

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 96/280 (34%), Gaps = 30/280 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+          + ++G++NAGKS+LFN +   DV    D    T
Sbjct: 173 QILSRLERVEKQREQGRRARTRAEVPTVSLVGYTNAGKSTLFNRMTAADV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     ++++      ++DT G             K T  E   A L+L + + +  + 
Sbjct: 232 LDPTLRRIEVDDVGDTVLADTVGFIRDLPHDLVAAFKATLQETREATLLLHVVDASDARV 291

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                       EI    +I F+ +  K D         D           +S+ TGEG+
Sbjct: 292 DENIDAVNEVLAEIE-ADDIPFLLVMNKIDRLENIAPRIDRDEENRPVRVWLSAQTGEGI 350

Query: 352 EELINKIKSILSNKFKKLPFSIP---SHKRHLYHLSQTVR 388
             L   +   LS +       +P      R  ++  Q + 
Sbjct: 351 PLLFQALTERLSGEIAHYSLHLPAGAGRLRSRFYQLQAIE 390


>gi|283783324|ref|YP_003374078.1| GTP-binding protein Era [Gardnerella vaginalis 409-05]
 gi|298252737|ref|ZP_06976531.1| GTPase [Gardnerella vaginalis 5-1]
 gi|283442229|gb|ADB14695.1| GTP-binding protein Era [Gardnerella vaginalis 409-05]
 gi|297533101|gb|EFH71985.1| GTPase [Gardnerella vaginalis 5-1]
          Length = 353

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 7/145 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   +  +   + + DT 
Sbjct: 43  YRSGF-VAVVGRPNVGKSTLMNALIGTQIAIASSRPETTRKAIRGIVTTDNAQMVLVDTP 101

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335
           GI     ++ +         + + D I  L   + +           I    +SD     
Sbjct: 102 GIHRPRTLLGQRLNDIVDESLADVDAIAFLLPADQE----IGPGDRRILSRLRSDFAKK- 156

Query: 336 TEEYDHLISSFTGEGLEELINKIKS 360
            +E  +        G+   I+ +  
Sbjct: 157 -DEKGNWTWKVPLIGIVTKIDTLSR 180


>gi|118364850|ref|XP_001015646.1| small GTP-binding protein domain containing protein [Tetrahymena
           thermophila]
 gi|89297413|gb|EAR95401.1| small GTP-binding protein domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 677

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 87/226 (38%), Gaps = 30/226 (13%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQG-----KLGEIIRNGYKIVILGHSNAGKSS 234
           E E       + V + +  LK ++ S +        K  +   N   I ++G++NAGKS+
Sbjct: 348 EGETQLELQRRLVNDKLSKLKKELISLLENQNFLREKRKKQYNNVPTIALIGYTNAGKSA 407

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTF 293
           L NAL KKDV    D    T    +    L  G    I DT G          +  + T 
Sbjct: 408 LMNALIKKDVVESKDNLFQTLSTTSRKFKLISGQQAIILDTIGFITDLPHELVDSFQSTL 467

Query: 294 LEVENADLILLLKEINSKKEISFPK----------------NIDFIFIGTKSDLYSTY-- 335
           +EVE+ADL+L +++I+        K                    I +  K DL      
Sbjct: 468 MEVEHADLVLHVRDISHPHTEDQKKTVLKVLKQLGFDQQFYTNKMIEVWNKMDLLEENVD 527

Query: 336 ------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                 ++     +S+     +++L   ++  +++   K  ++I +
Sbjct: 528 YQSALKSDFPVVPVSALYNTNIKKLTQILEQKVNHLMNKKYYTIVN 573


>gi|288916969|ref|ZP_06411341.1| GTP-binding protein Era [Frankia sp. EUN1f]
 gi|288351678|gb|EFC85883.1| GTP-binding protein Era [Frankia sp. EUN1f]
          Length = 305

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 11/124 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+   ++G  NAGKS+L N+L    VAI +  P TTR  +   +      + + DT G
Sbjct: 8   RSGF-ACVVGRPNAGKSTLTNSLVGTKVAITSGRPQTTRHAIRGIIHRPDAQLILVDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNIDFIFIG 326
           +     ++ +         +   D+I      +          + +     +    + I 
Sbjct: 67  LHRPRTLLGQRLNDVVRATLSEVDVIGFCMPADEPLGRGDRFIADELGRLARRTPVVAIL 126

Query: 327 TKSD 330
           TK D
Sbjct: 127 TKVD 130


>gi|289178676|gb|ADC85922.1| GTP-binding protein era [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 363

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 85/221 (38%), Gaps = 9/221 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L  +   + + DT 
Sbjct: 51  YRSGF-VAVVGRPNVGKSTLINALIGMQIAIASSRPETTRKAIRGVLTTDNAQIVLVDTP 109

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNIDFIFIGTKSDLY 332
           GI     ++ +         + ++D I  L   + +    +      +   F     D  
Sbjct: 110 GIHRPRTLLGQRLNDVVDESLADSDEIAFLLPADQEIGPGDRRILSRLRSQFATKNDDGT 169

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR-YLE 391
             +      +++        EL+NK+  I  N+F      +P       +L +     +E
Sbjct: 170 FKWKVPLIAIVTKIDRLNRTELVNKLIEI--NEFADFADIVPVSALGDDNLQEVRTVLIE 227

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432
                 +    D + E       ++ ++   V +E+L D +
Sbjct: 228 HLPEGPQMYPTDQVTEE--RPEDAIAELVRGVLLEELDDEL 266


>gi|197120019|ref|YP_002140446.1| ferrous iron transport protein B [Geobacter bemidjiensis Bem]
 gi|197089379|gb|ACH40650.1| ferrous iron transport protein B [Geobacter bemidjiensis Bem]
          Length = 741

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 73/219 (33%), Gaps = 20/219 (9%)

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
                  +   +++  +     R    + + G+ N+GKS+L NA+A      V +  G T
Sbjct: 6   KCKESLEETEGNLAAAQQPAQDRV-ITVAVAGNPNSGKSTLINAIAGT-RLHVGNWAGVT 63

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE- 313
            +     LD  G  +++ D  G        ++E + R +L  E  DLI+ + +  + +  
Sbjct: 64  VEKKEAQLDYAGRKIRLVDLPGTYSLSPYTQEEIVARDYLVNERPDLIVNVVDATNLERN 123

Query: 314 -----ISFPKNIDFIFIGTKSDLYSTYTEEYD------------HLISSFTGEGLEELIN 356
                      I  +      D       E D               S+    GL+EL  
Sbjct: 124 LYLTVQLLELGIPVVMALNIYDEAQAKGYEIDVEGIEKMLGVAVVPTSATKKTGLDELFK 183

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
            + +   +    +P  +   +       Q    L   +L
Sbjct: 184 SVLAAADDLAGHMPRKLTYGEDIEAAAEQVADELRHRNL 222


>gi|323968922|gb|EGB64247.1| small GTP-binding protein containing protein [Escherichia coli
           TA007]
          Length = 243

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 13/161 (8%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G  + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGCSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           + I    +   +F+ T++D             S+F+  G E
Sbjct: 137 RHILQRGHQQVLFVVTQADKNGALPRMGCGRHSAFSRTGTE 177


>gi|229018894|ref|ZP_04175738.1| hypothetical protein bcere0030_34090 [Bacillus cereus AH1273]
 gi|229025133|ref|ZP_04181559.1| hypothetical protein bcere0029_34370 [Bacillus cereus AH1272]
 gi|228736168|gb|EEL86737.1| hypothetical protein bcere0029_34370 [Bacillus cereus AH1272]
 gi|228742403|gb|EEL92559.1| hypothetical protein bcere0030_34090 [Bacillus cereus AH1273]
          Length = 424

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 101/292 (34%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKLTHIRSFI 172
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q    +  +    
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 173 EA----------DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
            A                + +      +  +++I      +  H  + +        +++
Sbjct: 140 LALSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKRQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 ALIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKS 329
                   + T  E   AD+IL + +      +                +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEQTVKELLSDLEINHIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F    L  +   I+  +  +  +    IP  +
Sbjct: 319 DKLHQNFIPFPKSDFLMTSAFEESDLLHIKEAIEKQMKEEMDRYQVEIPPSE 370


>gi|85374078|ref|YP_458140.1| GTPase [Erythrobacter litoralis HTCC2594]
 gi|84787161|gb|ABC63343.1| GTPase [Erythrobacter litoralis HTCC2594]
          Length = 433

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 100/284 (35%), Gaps = 38/284 (13%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E + ++ +  +  + S L   W   L   R          E +       + +   
Sbjct: 118 AATAEGRLQVELAHLDYQQSRLVRSWTH-LERQRGGFGFLGGPGETQI--EADRRMIRQR 174

Query: 196 ILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  L+ ++        L    R       I ++G++NAGKS+LFN L   +V    D+  
Sbjct: 175 MGRLRKELEQVRKTRGLHRERRGRAPWPVIALVGYTNAGKSTLFNRLTGAEVM-AEDLLF 233

Query: 253 TTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D     + L G     +SDT G             + T  EV  ADLIL +++I + 
Sbjct: 234 ATLDPTMRAIALPGVEKAILSDTVGFISDLPTQLVAAFRATLEEVTAADLILHVRDIANS 293

Query: 312 KEISFPKN-------------------IDFIFIGTKSDLYS----------TYTEEYDHL 342
              +                       I  + +  K DL               ++    
Sbjct: 294 SSAAQKSQVLEVLQDLGVIDGEDGESSIPILEVWNKWDLLDQDSAEELSGVAEGDDSVIP 353

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQ 385
           +S+ TG  ++ L  ++  +L+ + +   F +   + R +  L Q
Sbjct: 354 VSAATGWHVDVLQERLGQVLTAQAQTREFLLSVSEGRKIAWLHQ 397


>gi|18977549|ref|NP_578906.1| gtp1/obg family GTP-binding protein [Pyrococcus furiosus DSM 3638]
 gi|18893260|gb|AAL81301.1| GTP-binding protein, gtp1/obg family [Pyrococcus furiosus DSM 3638]
          Length = 431

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 83/210 (39%), Gaps = 6/210 (2%)

Query: 189 SKEVLNDILFLKNDISSHISQG--KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVA 245
            K +   +  ++ ++    ++   +  +   +G+  + + G++NAGKS+L NAL  ++V 
Sbjct: 153 FKHIRYRMGKIREELEKIKAERDIRRKKREEDGFVLVALAGYTNAGKSTLLNALTGENV- 211

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
              +   TT D  T    L G L+ I+DT G  +       E    T  E+  AD+I+L+
Sbjct: 212 EAKNQMFTTLDTTTRRFKLGGKLLLITDTVGFIDNLPPFIVEAFHSTLEEIVKADIIVLV 271

Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            + +        K    + +  +            + I   T E  E     +K I   +
Sbjct: 272 LDSSEAWPEIRRKFFASLNVLRELKALERPMIIALNKIDKVTPEDAETKKMLLKEIADGR 331

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395
              +     S K  +  L +    LE A L
Sbjct: 332 VNLVEVVKISAKNGI--LEELYTALEKALL 359


>gi|194426656|ref|ZP_03059210.1| putative GTPase [Escherichia coli B171]
 gi|194415395|gb|EDX31663.1| putative GTPase [Escherichia coli B171]
 gi|195183288|dbj|BAG66827.1| putative small GTP-binding protein [Escherichia coli O111:H-]
 gi|195183354|dbj|BAG66891.1| putative small GTP-binding protein [Escherichia coli O111:H-]
          Length = 290

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMIITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|194432361|ref|ZP_03064648.1| putative GTPase [Shigella dysenteriae 1012]
 gi|297521934|ref|ZP_06940320.1| hypothetical protein EcolOP_30123 [Escherichia coli OP50]
 gi|15808742|gb|AAL08471.1| unknown [Shigella flexneri 2a]
 gi|194419248|gb|EDX35330.1| putative GTPase [Shigella dysenteriae 1012]
 gi|333009623|gb|EGK29075.1| hypothetical protein SFK272_1251 [Shigella flexneri K-272]
 gi|333020579|gb|EGK39839.1| hypothetical protein SFK227_0562 [Shigella flexneri K-227]
          Length = 290

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRGQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|163795484|ref|ZP_02189450.1| putative gtp-binding protein [alpha proteobacterium BAL199]
 gi|159179083|gb|EDP63616.1| putative gtp-binding protein [alpha proteobacterium BAL199]
          Length = 437

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 82/212 (38%), Gaps = 40/212 (18%)

Query: 190 KEVLNDILFLKND----ISSHISQGKLGEIIRNGYK-------IVILGHSNAGKSSLFNA 238
           +  L     L +D    I   + + K    +  G +       + ++G++NAGKS+LFN 
Sbjct: 161 ERQLEIDRRLIDDKIIRIRRELEEVKRTRELHRGARRRVPYPIVALVGYTNAGKSTLFNR 220

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           L+   V +  D+   T D     +++  G  + +SDT G             + T  EV 
Sbjct: 221 LSGASV-VAEDLLFATLDPTMRRIEVPGGRTIILSDTVGFISDLPTHLVAAFRATLEEVT 279

Query: 298 NADLILLLKEINSKKEISFPKNI----------------DFIFIGTKSDLY--------- 332
            AD+++ +++I      +   ++                  + +  K D           
Sbjct: 280 EADVVVHVRDIAHPDSNAQKSDVEGVLASLGIDETTRSGRMLEVLNKIDRLPDDQRIAVK 339

Query: 333 --STYTEEYDHLISSFTGEGLEELINKIKSIL 362
             +    E    +S+ TGEG++EL + I  +L
Sbjct: 340 QRAASGNEPVAAVSAITGEGIDELRSVIAQLL 371


>gi|86610325|ref|YP_479087.1| GTP-binding domain-containing protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558867|gb|ABD03824.1| GTP-binding domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 407

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 66/172 (38%), Gaps = 16/172 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
            +   + L     L+ +  +         +    + I + G  N GKS++ NAL  ++  
Sbjct: 15  CWDHWQSLASRRDLQPEFRAL--STLRKRLTARLFSIAVFGLVNRGKSAVLNALTGEERL 72

Query: 246 IVTDIPGTTRDVLTIDLDLE-GYL--VKISDTAGIRETDDIVEKEGIKR-TFLEVENADL 301
            V  + G T+   ++      G    V++ DT G+ E     E E  ++  +    +ADL
Sbjct: 73  KVGPLNGVTQQPQSLLWQPGPGIPWRVRLVDTPGLNEV----EGEAREQLAWDVARSADL 128

Query: 302 ILLLK--EINSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
           I+ +   ++   +  +  +    +   + +  K DLYS    +      S  
Sbjct: 129 IVFVIATDLTQLEYQALSELRTLHKPILLVLNKCDLYSEAELQAICAQISRH 180


>gi|116515098|ref|YP_802727.1| hypothetical protein BCc_162 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285506|sp|Q057R5|ERA_BUCCC RecName: Full=GTPase Era
 gi|116256952|gb|ABJ90634.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 297

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 54/87 (62%), Gaps = 1/87 (1%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI+I+G +N GKS+L N L K +++I++  P TT+  +      + +  +I D+ G+++ 
Sbjct: 9   KIIIVGRTNVGKSTLLNKLIKSNISIISRKPNTTQKHIIGIYTYKLFQFEIFDSPGLQDK 68

Query: 281 -DDIVEKEGIKRTFLEVENADLILLLK 306
             +I+EK+ I+ TF  +  +D+I+ L 
Sbjct: 69  YHNIIEKKKIRDTFNLINESDIIIFLI 95


>gi|88858905|ref|ZP_01133546.1| HflX, putative GTPase subunit of protease with nucleoside triP
           hydrolase domain [Pseudoalteromonas tunicata D2]
 gi|88819131|gb|EAR28945.1| HflX, putative GTPase subunit of protease with nucleoside triP
           hydrolase domain [Pseudoalteromonas tunicata D2]
          Length = 429

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 90/253 (35%), Gaps = 25/253 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ + 
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLIRDKIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL   + ++    QG+          + ++G++NAGKS+LFN     DV    D    T
Sbjct: 173 TILKRLDKVAKQREQGRRARTRNEIPTVSLVGYTNAGKSTLFNRATASDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     +D+     V ++DT G             K T +E   ADL L + ++  ++ 
Sbjct: 232 LDPTLRKIDVADIGSVIMADTVGFIRHLPHDLVAAFKATLVETREADLQLHVIDVADERR 291

Query: 314 IS------------FPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                            ++  + I  K DL        D           +S+ TG G E
Sbjct: 292 QENIDQVNDVLHEIEADDVPQLLIYNKIDLVEELVPRIDRDDEGKPIRIWLSAQTGVGCE 351

Query: 353 ELINKIKSILSNK 365
            L+  I   L+ K
Sbjct: 352 LLLQAISECLAEK 364


>gi|310133118|ref|XP_003121072.1| PREDICTED: putative GTP-binding protein 6-like [Homo sapiens]
          Length = 366

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 100/284 (35%), Gaps = 27/284 (9%)

Query: 149 GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHIS 208
            ++G            + H+   + +       E       + +      ++  +     
Sbjct: 71  HLAGVTCPRGSNLKRDVAHLYRGVGSRYIMGSGESFMQLQQRLLREKEAKIRKALDRLRK 130

Query: 209 QGK---LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV-TDIPGTTRDVLTIDLDL 264
           +          R    I ++G++N GK++L  AL   D AI   D    T DV      L
Sbjct: 131 KRHLLCRQRTRREFPVISVVGYTNCGKTTLIKALTG-DAAIQPRDQLFATLDVTAHAGTL 189

Query: 265 EGYLVKI-SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------- 312
              +  +  DT G          E    T  +V ++DLIL +++++  +           
Sbjct: 190 PSRMTVLYVDTIGFLSQLPHGLIESFSATLEDVAHSDLILHVRDVSHPEAELQKCSVLST 249

Query: 313 ----EISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLEELINKIKSILSNKF 366
               ++  P     + +  K DL   Y  TE     +S+  G GL+EL  ++ + +    
Sbjct: 250 LRGLQLPAPLLDSMVEVHNKVDLVPGYSPTEPNVVPVSALRGHGLQELKAELDAAVLKAT 309

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
            +   ++    R     +Q     + A++ E D   +  A ++R
Sbjct: 310 GRQILTL----RVRLAGAQLSWLYKEATVQEVDVIPEDGAADVR 349


>gi|172041010|ref|YP_001800724.1| GTP-binding protein Era [Corynebacterium urealyticum DSM 7109]
 gi|171852314|emb|CAQ05290.1| putative GTP-binding protein [Corynebacterium urealyticum DSM 7109]
          Length = 346

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 79/216 (36%), Gaps = 30/216 (13%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
               E  R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +      +
Sbjct: 40  FDTPEGFRSGF-VSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGLVHRPKAQI 98

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKN 319
            + DT G+     ++ +           + DLI +    + K                  
Sbjct: 99  VVVDTPGLHRPRTLLGERLNDVVKETYVDMDLICVCVPADEKIGPGDRWIVENVRQVAPK 158

Query: 320 IDFIFIGTKSD-------------LYSTYTEEYD------HLISSFTGEGLEELINKIKS 360
           +  + I TK+D             L++  TE  D        +S+  G  L+ L++ I  
Sbjct: 159 VPLMGIVTKTDKVSKDRVGQQLLGLHAMLTEALDGAEVDVVPLSAQDGFQLDTLVDVIAE 218

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
            L    K  P    +       +++ +R   ++ L 
Sbjct: 219 KLPEGPKFYPDDHVTDDDTETRIAELIREAALSGLE 254


>gi|323938863|gb|EGB35085.1| hypothetical protein ERDG_04520 [Escherichia coli E482]
          Length = 290

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|227884874|ref|ZP_04002679.1| GTPase [Escherichia coli 83972]
 gi|227838166|gb|EEJ48632.1| GTPase [Escherichia coli 83972]
          Length = 242

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 17/174 (9%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++ R+   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   GY + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGYSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELINKIKSIL 362
           + I    +   +F+ T++D  +    E+D      S    + + E    +  + 
Sbjct: 137 RHILQCGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREKTEAVFRLF 189


>gi|255534048|ref|YP_003094420.1| GTP-binding proten HflX [Pedobacter heparinus DSM 2366]
 gi|255347032|gb|ACU06358.1| GTP-binding proten HflX [Pedobacter heparinus DSM 2366]
          Length = 396

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 19/213 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + +L  I  LK  +     Q +     R    ++ ++G++N GKS++ N L+K +V  
Sbjct: 171 DRRMILEKISLLKTRLKQIDRQNETQRKNRGQLIRVALVGYTNVGKSTIMNMLSKSEV-F 229

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + +E     +SDT G          E  K T  EV  AD+++ + 
Sbjct: 230 AENKLFATLDTTVRKVVIENLPFLLSDTVGFIRKLPHHLVECFKSTLDEVREADILIHVV 289

Query: 307 EINS---KKEISF---------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           +++    + +I+           ++ D I +  K D Y   + E DH         L++ 
Sbjct: 290 DVSHPNFEDQINVVNETLKDLGARDKDTIMVFNKIDAY--VSPEPDHEDEEKIVLTLDDF 347

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
               KS +  +     F    HK +L    Q +
Sbjct: 348 K---KSWMGAENAPALFISALHKENLEEFRQLL 377


>gi|197303299|ref|ZP_03168339.1| hypothetical protein RUMLAC_02022 [Ruminococcus lactaris ATCC
           29176]
 gi|197297583|gb|EDY32143.1| hypothetical protein RUMLAC_02022 [Ruminococcus lactaris ATCC
           29176]
          Length = 413

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 106/268 (39%), Gaps = 33/268 (12%)

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           A  +S E ++Q  L+        +S        L+ +   I       ++ ++     +E
Sbjct: 116 ARAVSGEGKIQVELAQLRYR---ASRLSGLGRSLSRLGGGIGTRGPGEKKLEMDRRLIRE 172

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAK----KDVAI 246
            ++ +     D+  H  +    +  ++G K+  ++G+++AGKSS+ NAL      +D  +
Sbjct: 173 RISRLKKELADVERH-RELLRSQRNQSGMKVAALVGYTSAGKSSIENALTNAGILEDAML 231

Query: 247 VTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            + +  TTR      L L+G   + ++DT G          E  K T  E + AD+I+ +
Sbjct: 232 FSTLDTTTR-----ALQLDGTQEILLTDTVGFIRKLPHHLIEAFKSTLEEAKYADIIIHV 286

Query: 306 KEINSKKEISF------------PKNIDFIFIGTKSDLYST------YTEEYDHLISSFT 347
            ++++ +                 +    I +  K D          +  +Y    S+ T
Sbjct: 287 VDVSNPRMDEQMYVVYDTLRQMGAEGKPVITLFNKQDRLEKEESHKDFQADYSIATSAKT 346

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPS 375
           G+GL++L   +  I+      +    P 
Sbjct: 347 GQGLDKLKAALLEIIRRDQIYVERLYPF 374


>gi|255319634|ref|ZP_05360844.1| GTP-binding protein HflX [Acinetobacter radioresistens SK82]
 gi|255303318|gb|EET82525.1| GTP-binding protein HflX [Acinetobacter radioresistens SK82]
          Length = 446

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 116/320 (36%), Gaps = 36/320 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + +  
Sbjct: 115 RARTHEGKLQVELAQLEHLSTRLVRGW----THLERQKGGIGLRGPGESQLETDRRLLRI 170

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            +  LK+ +         G   R       + ++G++NAGKS+LFN LA  +V    +  
Sbjct: 171 RMGQLKDKLEKVRQTRMQGRAARQKAAIPTVSLVGYTNAGKSTLFNILANTEV-YAANQL 229

Query: 252 GTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     L+ +G   + ++DT G          E  K T  E   A L+L + + ++
Sbjct: 230 FATLDPTLRRLEWDGIGSLVLADTVGFVRNLPHSLVESFKATLEETLEATLLLHVIDSST 289

Query: 311 KKEISFPK-----------NIDFIFIGTKSDLYSTYTEEY--------DHLISSFTGEGL 351
              +               ++  + +  K D+     +             +S+ +G+GL
Sbjct: 290 PDMMEQIDAVESVLKEIGADVPVLRVYNKIDVSGEAAKIIYAKPHMPERVYVSAHSGQGL 349

Query: 352 EELINKIKSILSNKFKKLPFSIPSH----KRHLYHLS--QTVRYLEMASLNE-KDCGLDI 404
           E L   ++  L  + ++    +       +  LY L+  Q+  Y +   L+   +     
Sbjct: 350 ELLRQAVQECLMGQLQQFELVLNPAYGKLRTQLYALNVIQSEAYDDEGQLHLTVNMAPHK 409

Query: 405 IAENLRLASVSLGKITGCVD 424
           + + ++ A + + +I G   
Sbjct: 410 LEQLIKQAHLPIDEILGQNS 429


>gi|218706547|ref|YP_002414066.1| hypothetical protein ECUMN_3399 [Escherichia coli UMN026]
 gi|254038095|ref|ZP_04872153.1| YeeP protein [Escherichia sp. 1_1_43]
 gi|218433644|emb|CAR14558.1| conserved hypothetical protein with GTPase domain [Escherichia coli
           UMN026]
 gi|226839719|gb|EEH71740.1| YeeP protein [Escherichia sp. 1_1_43]
          Length = 303

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 30/273 (10%)

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+    +    + E +   L  L   +S HI +  L ++  +   I I+G S AGKSSL 
Sbjct: 8   FTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLC 66

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLE 295
           NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ D   E E + R    
Sbjct: 67  NALFQGEVTPVSDVLAGTREVQRFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDI-- 124

Query: 296 VENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           +   DL+L L + + +         + I    +   +F+ T++D  +    E+D      
Sbjct: 125 LPELDLVLWLIKADDRALSVDEYFWRHILQCGHQQVLFVVTQAD-KTEPCHEWDMAGIQP 183

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402
           +    + +  K    +   F+ +   +    R  + L   V  L  A  +     L    
Sbjct: 184 SPAQEQNIREK-TEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRL 242

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
             ++  E++R  +    + TG V      D IF
Sbjct: 243 QDELRTESVRSQARE--QFTGAV------DRIF 267


>gi|260061118|ref|YP_003194198.1| GTP-binding protein HflX [Robiginitalea biformata HTCC2501]
 gi|88785250|gb|EAR16419.1| GTP-binding protein HflX [Robiginitalea biformata HTCC2501]
          Length = 405

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 17/173 (9%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L     + I +    +    G   ++ ++G++N GKS+L N ++
Sbjct: 161 ETEIETDRRIVRDRISLLKKKLAKIDKQMETQRGNRGSLVRVALVGYTNVGKSTLMNVVS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K +V    +    T D     + L      +SDT G          E  K T  EV  AD
Sbjct: 221 KSEV-FAENKLFATLDTTVRKVVLGNLPFLLSDTVGFIRKLPTQLVESFKSTLDEVREAD 279

Query: 301 LILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
           L+L + +I+                EI   +    + +  K DLY     E D
Sbjct: 280 LLLHVVDISHPNFEEHIDSVNQILAEIDCAEKETLM-VFNKIDLYEAEPLEED 331


>gi|193063029|ref|ZP_03044121.1| putative GTPase [Escherichia coli E22]
 gi|260845663|ref|YP_003223441.1| hypothetical protein ECO103_3582 [Escherichia coli O103:H2 str.
           12009]
 gi|260846939|ref|YP_003224717.1| hypothetical protein ECO103_4896 [Escherichia coli O103:H2 str.
           12009]
 gi|192931288|gb|EDV83890.1| putative GTPase [Escherichia coli E22]
 gi|257760810|dbj|BAI32307.1| hypothetical protein ECO103_3582 [Escherichia coli O103:H2 str.
           12009]
 gi|257762086|dbj|BAI33583.1| hypothetical protein ECO103_4896 [Escherichia coli O103:H2 str.
           12009]
 gi|320667285|gb|EFX34248.1| hypothetical protein ECOSU61_09164 [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 290

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPKLDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|320663345|gb|EFX30647.1| hypothetical protein ECO5905_15638 [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 290

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 103/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +     I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVPGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L+  G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LNGHGHSMVITDLPGVGESRDRDTEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+  ++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQRVLFVVMQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHR 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|307267059|ref|ZP_07548573.1| ferrous iron transport protein B [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917939|gb|EFN48199.1| ferrous iron transport protein B [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 656

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 19/168 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++N   I + G++N GKS +FN L      I+ + PG T +     L  +G  +KI D  
Sbjct: 1   MKNEIVIALAGNANVGKSVIFNQLTGLTQ-IIGNWPGKTVERAEGVLRFKGRTIKIVDLP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------------ISFPKNID 321
           GI       ++E + R F+  E  D+++ + + ++ +               +    N  
Sbjct: 60  GIYSLSAYSQEEIVSREFIAFEKPDVVINVVDASNLERNLFFTVQLLELHVPMVMALNQV 119

Query: 322 FIFIGTKSDLYSTYTEEY----DHLISSFTGEGLEELINKIKSILSNK 365
              I    D+     EE          +  G+GLEELI+K+  I+ + 
Sbjct: 120 DYAIKKGIDINVKRLEELLGIPVVKTIATKGKGLEELIDKVLEIVDSH 167


>gi|327311446|ref|YP_004338343.1| small GTP-binding protein [Thermoproteus uzoniensis 768-20]
 gi|326947925|gb|AEA13031.1| small GTP-binding protein [Thermoproteus uzoniensis 768-20]
          Length = 400

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 9/176 (5%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSSLFNALAKK 242
           +   + +++ I ++K  +             R  +   ++V+ G+++ GK++LFN L  +
Sbjct: 149 DAYYRHMVSRISYIKRRLDKMREDRARLMRRRRDFGVPEVVLTGYTSVGKTTLFNRLTAE 208

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
               V   P  T D  +  + L G  + ++DT G  E    V  E    T  EV +ADL+
Sbjct: 209 HK-YVDGRPFATLDTYSRRISLWGKEIVLTDTIGFIEDLPPVLIESFYSTLQEVADADLV 267

Query: 303 LLLKEI-NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
           LLL +  + ++E +         + T       + E    ++S     GL EL+ K
Sbjct: 268 LLLADASDDEEEFARELQTSIDVLST----IGVHKERVLPVLSKVDAVGLPELVRK 319


>gi|326389350|ref|ZP_08210918.1| ferrous iron transport protein B [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994713|gb|EGD53137.1| ferrous iron transport protein B [Thermoanaerobacter ethanolicus JW
           200]
          Length = 656

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 19/168 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++N   I + G++N GKS +FN L      I+ + PG T +     L  +G  +KI D  
Sbjct: 1   MKNEIVIALAGNANVGKSVIFNQLTGLTQ-IIGNWPGKTVERAEGVLRFKGRTIKIVDLP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------------ISFPKNID 321
           GI       ++E + R F+  E  D+++ + + ++ +               +    N  
Sbjct: 60  GIYSLSAYSQEEIVSREFIAFEKPDVVINVVDASNLERNLFFTVQLLELHVPMVMALNQV 119

Query: 322 FIFIGTKSDLYSTYTEEY----DHLISSFTGEGLEELINKIKSILSNK 365
              I    D+     EE          +  G+GLEELI+K+  I+ + 
Sbjct: 120 DYAIKKGIDINVKRLEELLGIPVVKTIATKGKGLEELIDKVLEIVDSH 167


>gi|302332911|gb|ADL23104.1| GTPase HflX [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 412

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 101/265 (38%), Gaps = 25/265 (9%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 180 NEIKHQLQTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 298

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEEL-- 354
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L  
Sbjct: 299 YRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVK 358

Query: 355 ---INKIKSILSNKFKKLPFSIPSH 376
              I++IK  L+   + +  +    
Sbjct: 359 TLFIDEIKRQLTYYDEAIETNNADR 383


>gi|255506962|ref|ZP_05382601.1| GTP binding protein [Chlamydia trachomatis D(s)2923]
 gi|296435899|gb|ADH18073.1| GTP binding protein [Chlamydia trachomatis G/9768]
 gi|296437759|gb|ADH19920.1| GTP binding protein [Chlamydia trachomatis G/11074]
 gi|297140259|gb|ADH97017.1| GTP binding protein [Chlamydia trachomatis G/9301]
          Length = 447

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 95/265 (35%), Gaps = 23/265 (8%)

Query: 135 ISSETEMQRRLSM-EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           +++E  +Q  L+    +   L  ++G    + +          +  ++ ++     +E +
Sbjct: 141 LTAEAGLQVELAQARYLLPRLKRMWGHLSRQKSGGSGGGFVKGEGEKQIELDRRIVRERI 200

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           + +     ++     + +  +         ++G++N+GKS+L N L   D   V +    
Sbjct: 201 HKLSRDLKNVERQREERRKAKKRNQIPTFALIGYTNSGKSTLLNLLTSAD-TYVENKLFA 259

Query: 254 TRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T    L  G  V ++DT G             K T       D++L + + +   
Sbjct: 260 TLDPKTRRCVLPCGQRVLLTDTVGFIRKLPHTLVAAFKSTLEAALQEDILLHVVDASHPL 319

Query: 313 EISFPK------------NIDFIFIGTKSDLYS--------TYTEEYDHLISSFTGEGLE 352
            +   +                I +  K D  +                 +S+ TGEG+ 
Sbjct: 320 ALEHVETTKAILQELGITQPQVITVLNKMDKVADGVTASRLRLMSPNPVCVSAKTGEGIR 379

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK 377
           EL+  ++ ++  ++ +    +P  +
Sbjct: 380 ELLRSMEDMVQEEYPQATLHLPYKE 404


>gi|300992774|ref|ZP_07180049.1| small GTP-binding protein [Escherichia coli MS 45-1]
 gi|300406801|gb|EFJ90339.1| small GTP-binding protein [Escherichia coli MS 45-1]
          Length = 276

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 30/273 (10%)

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+    +    + E +   L  L   +S HI +  L ++  +   I I+G S AGKSSL 
Sbjct: 16  FTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLC 74

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLE 295
           NAL + +V  V+D+   TR+V    L   GY + I+D  G+ E+ D   E E + R    
Sbjct: 75  NALFQGEVTPVSDVHAGTREVQRFRLSGHGYSMVITDLPGVGESRDRDAEYEALYRDI-- 132

Query: 296 VENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           +   DL+L L + + +         + I    +   +F+ T++D  +    E+D      
Sbjct: 133 LPELDLVLWLIKADDRALSVDEYFWRHILQCGHQQVLFVVTQAD-KTEPCHEWDMAGIQP 191

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402
           +    + +  K    +   F+ +   +    R  + +   V  L  A  +     L    
Sbjct: 192 SPAQAQNIREK-TEAVFRLFRPVHPVVAVSARTGWEVDTLVSALMTALPDHAASPLMTRL 250

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
             ++  E++R  +    + TG V      D IF
Sbjct: 251 QDELRTESVRAQARE--QFTGAV------DRIF 275


>gi|313672984|ref|YP_004051095.1| ferrous iron transport protein b [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939740|gb|ADR18932.1| ferrous iron transport protein B [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 646

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 20/173 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIR 278
           +K++++G+ N GKS+LF  L+ K V+ V++ PGTT D+      +   + ++  DT G  
Sbjct: 7   FKVLLIGNPNVGKSALFYRLSGKYVS-VSNYPGTTVDITRGKTKVGEHHEIEFIDTPGFY 65

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLY 332
               I E+E + +  L  E  D++L + +  + + +           +  I +    D  
Sbjct: 66  NLMTITEEEKVTKKLLLEETPDVVLHVIDAKNIQRMLPLTLQLIEAGLPVILVLNMFDEL 125

Query: 333 STYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                E +                +  G G+E L+++I S+   ++     SI
Sbjct: 126 KHRGLEINLPHLEHDLGIPVVATVATKGIGIENLVSRIVSVCEKRYNYQRISI 178


>gi|288556892|ref|YP_003428827.1| GTP binding protein YnbA [Bacillus pseudofirmus OF4]
 gi|288548052|gb|ADC51935.1| YnbA GTP binding protein [Bacillus pseudofirmus OF4]
          Length = 423

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 93/235 (39%), Gaps = 20/235 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             +  +N+I      + +H  + +         ++ ++G++NAGKS+L N L K D  + 
Sbjct: 169 HIRRRMNEIERQLEAVVNHRVRYREKRKKNAAIQLALVGYTNAGKSTLLNRLTKAD-TLE 227

Query: 248 TDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
            D    T D  T  L L  G+ V +SDT G  +          + T  E++ ADL+L + 
Sbjct: 228 EDQLFATLDPTTRQLHLPSGFSVLMSDTVGFIQDLPTTLVASFRSTLEELKEADLLLHVV 287

Query: 307 EINSKK------------EISFPKNIDFIFIGTKSD-----LYSTYTEEYDHLISSFTGE 349
           + +               E     +I  + I  K+D        T+T++   ++S++  E
Sbjct: 288 DCSHPDYEQHERTVIKLIEELEAHSIPQLLIYNKADQKTDVFIPTHTKD-SIIMSAYNEE 346

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
            L  L  KI+  L          I + + H+   ++    +     +E      I
Sbjct: 347 DLLALKVKIEQALKGMMMPYRSIIKADEGHILAAARQETMIHTQQFDESREAYVI 401


>gi|260858460|ref|YP_003232351.1| hypothetical protein ECO26_5485 [Escherichia coli O26:H11 str.
           11368]
 gi|257757109|dbj|BAI28611.1| hypothetical protein ECO26_5485 [Escherichia coli O26:H11 str.
           11368]
          Length = 290

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RYILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|313206776|ref|YP_004045953.1| GTP-binding protein hflx [Riemerella anatipestifer DSM 15868]
 gi|312446092|gb|ADQ82447.1| GTP-binding protein HflX [Riemerella anatipestifer DSM 15868]
 gi|315023848|gb|EFT36850.1| GTP-binding protein HflX [Riemerella anatipestifer RA-YM]
 gi|325335785|gb|ADZ12059.1| HflX [Riemerella anatipestifer RA-GD]
          Length = 406

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 76/192 (39%), Gaps = 18/192 (9%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L  +    I +    +    G   ++ ++G++N GKS+L N ++
Sbjct: 161 ETEIETDRRIIRDRISLLKEKLKTIDKQMATQRNNRGKMVRVALVGYTNVGKSTLMNVIS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K +V    +    T D     + +      ++DT G          E  K T  EV  AD
Sbjct: 221 KSEV-FAENKLFATLDTTVRKVVIGNLPFLLTDTVGFIRKLPTQLVESFKSTLDEVREAD 279

Query: 301 LILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISSF 346
           L++ + +I+ +             +EI   +    I I  K D +S    +E D   ++ 
Sbjct: 280 LLVHVVDISHESFEDHIESVNQILQEIDAHRK-PAIMIFNKIDDFSYEKKDEDDLTPATK 338

Query: 347 TGEGLEELINKI 358
               L+E     
Sbjct: 339 KNISLDEWRKTW 350


>gi|154509064|ref|ZP_02044706.1| hypothetical protein ACTODO_01581 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798698|gb|EDN81118.1| hypothetical protein ACTODO_01581 [Actinomyces odontolyticus ATCC
           17982]
          Length = 512

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 75/217 (34%), Gaps = 26/217 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +VI G++NAGKS+L N L    V +   +  T    +      +G    ++DT G     
Sbjct: 283 VVIAGYTNAGKSTLLNRLTDAGVLVQDALFATLDPTVRRARAADGREYTLTDTVGFVRNL 342

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-------------ISFPKNIDFIFIGTK 328
                E  + T  EV  AD+IL + +                   I     I  +    K
Sbjct: 343 PTQLVEAFRSTLEEVGQADIILHVVDAAHPDPVSQVQAVCSVIDTIEGASEIPELIALNK 402

Query: 329 SDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS------ 375
           +DL S                +S+ TG G+E L   ++ +L      +   +P       
Sbjct: 403 ADLASPEQIALLRTVFPNAVPLSAHTGWGVEALRAALEDMLPRPRVAVDAILPYSAGSLV 462

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
           H+ H     +   Y+E  +         + A   R A
Sbjct: 463 HRIHEEGDVEREEYVETGTRIVARVDEALAAVIAREA 499


>gi|91204564|emb|CAJ70792.1| similar to ATP/GTP-binding protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 431

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 83/209 (39%), Gaps = 23/209 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV 244
              ++ V   I  LK  +     + +     R  +  + I+G++NAGKS+L NAL   D 
Sbjct: 168 EVDNRIVSRKIHDLKKRLGEIEKRQQRVVASRKEFSTVSIVGYTNAGKSTLMNALTDVD- 226

Query: 245 AIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           A+V D    T D  T    LE    + ISDT G  +          K T  E  NAD++L
Sbjct: 227 AMVEDKLFATLDTKTGICKLENSKNILISDTVGFIQKLPHYLVSSFKATLEETRNADILL 286

Query: 304 LLKEINSK---KEISFPK---------NIDFIFIGTKSD------LYSTYTEEYDHL--I 343
            + +I+S    K+I                 I +  K D      +       Y +   I
Sbjct: 287 HVADISSPHIHKQIESVNIVLKELGCEKKPTIIVLNKIDALKDESVIPLLKNRYKNCIVI 346

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS 372
           S+ T +G+  L  KI  IL  +   +  S
Sbjct: 347 SAKTCQGIPALKQKIAEILEKRLLNIEIS 375


>gi|86138349|ref|ZP_01056923.1| GTP-binding protein HflX [Roseobacter sp. MED193]
 gi|85824874|gb|EAQ45075.1| GTP-binding protein HflX [Roseobacter sp. MED193]
          Length = 423

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 28/219 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + ++ L+  ++  +    L    R       + ++G++NAGKS+LFN L   
Sbjct: 166 EADRRAIDDQLVNLRRQLAKVVKTRSLHRAARAKIPFPIVALVGYTNAGKSTLFNRLTGA 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V    D+   T D     +++ +G  + +SDT G             + T  EV  AD+
Sbjct: 226 EVM-AKDMLFATLDPTMRRVEMPDGPEIILSDTVGFISDLPTELVAAFRATLEEVLAADV 284

Query: 302 ILLLKEINSKKEISFPKNIDFIF-------------IGTKSDLYST----------YTEE 338
           IL +++I+ +   +   ++  I              +  K D                EE
Sbjct: 285 ILHVRDISHEDSQNQANDVAAILSTLGVDETRAQIEVWNKLDQLPEDVAEARRQRAAREE 344

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
             H IS+ TGEG+E L++ +   L        F++   +
Sbjct: 345 GIHAISALTGEGIEALLDDVALKLEGVRHVEEFTLSFAQ 383


>gi|307545609|ref|YP_003898088.1| GTP-binding protein Era [Halomonas elongata DSM 2581]
 gi|307217633|emb|CBV42903.1| GTP-binding protein Era [Halomonas elongata DSM 2581]
          Length = 299

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 75/218 (34%), Gaps = 30/218 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           + I+G  N GKS+L N +  + ++I +  P TTR  +              DT GI    
Sbjct: 8   VAIVGRPNVGKSTLMNHILGQKISITSRRPQTTRHQVMGIKTEGDAQFIYVDTPGIHLLE 67

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSD 330
           ++ +  + +   +     + + D ++ + +     ++ ++   +        I    K D
Sbjct: 68  KDRNKAINRFMNQAATQALRDVDCVIFIIDRTRWTAEDQVVLERLATVEAPVILAVNKVD 127

Query: 331 --------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
                         +           I++  G  + EL  ++   L       P    + 
Sbjct: 128 RLNDKSTLLPWLDEVRGRREFAAIVPIAAKHGTNVAELEAEVAKYLPESVHYFPDDQVTD 187

Query: 377 KRHLYHLSQTVRYLEMASLNEK---DCGLDIIAENLRL 411
           +   +  ++ VR   M  L ++      ++I  E  R 
Sbjct: 188 RSLRFLAAELVREKIMRQLGDELPYQMTVEI--EEFRE 223


>gi|268609534|ref|ZP_06143261.1| small GTP-binding protein [Ruminococcus flavefaciens FD-1]
          Length = 415

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 88/230 (38%), Gaps = 18/230 (7%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L+ +   I        + +      ++ ++ +     ++  H    +            I
Sbjct: 145 LSRLGGGIGTRGPGETKLETDKRHIRKRISYLEAELEELKKHRDFSRSRRKKDGVLCAAI 204

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDI 283
           +G++N GKS+L NAL    V +  +    T D+ +  ++L +G  V + DT G+      
Sbjct: 205 VGYTNVGKSTLLNALTDAGV-LAENKLFATLDITSRSIELPDGRSVMLIDTVGLIRRLPH 263

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDL 331
              E  K T  E   AD+IL ++++ S +     +             I  IF+  K+D 
Sbjct: 264 NLVEAFKSTLEEAAAADIILNVQDLTSPEIKEQAEVTAHLLSELGCDGIPQIFVMNKADA 323

Query: 332 YS----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                  + +    LIS+    G + L+  I   L    K++   IP  K
Sbjct: 324 APFTDTVFEDGNTVLISAKEQTGFDRLLECIVRNLPETAKRMKLLIPYDK 373


>gi|262379008|ref|ZP_06072165.1| GTP-binding protein HflX [Acinetobacter radioresistens SH164]
 gi|262300293|gb|EEY88205.1| GTP-binding protein HflX [Acinetobacter radioresistens SH164]
          Length = 446

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 116/320 (36%), Gaps = 36/320 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + +  
Sbjct: 115 RARTHEGKLQVELAQLEHLSTRLVRGW----THLERQKGGIGLRGPGESQLETDRRLLRI 170

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            +  LK+ +         G   R       + ++G++NAGKS+LFN LA  +V    +  
Sbjct: 171 RMGQLKDKLEKVRQTRMQGRAARQKAAIPTVSLVGYTNAGKSTLFNILANTEV-YAANQL 229

Query: 252 GTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     L+ +G   + ++DT G          E  K T  E   A L+L + + ++
Sbjct: 230 FATLDPTLRRLEWDGIGSLVLADTVGFVRNLPHSLVESFKATLEETLEATLLLHVIDSST 289

Query: 311 KKEISFPK-----------NIDFIFIGTKSDLYSTYTEEY--------DHLISSFTGEGL 351
              +               ++  + +  K D+     +             +S+ +G+GL
Sbjct: 290 PDMMEQIDAVESVLKEIGADVPVLRVYNKIDVSGEAAKIIYAKPHMPERVYVSAHSGQGL 349

Query: 352 EELINKIKSILSNKFKKLPFSIPSH----KRHLYHLS--QTVRYLEMASLNE-KDCGLDI 404
           E L   ++  L  + ++    +       +  LY L+  Q+  Y +   L+   +     
Sbjct: 350 ELLRQAVQECLMGQLQQFELVLNPAYGKLRTQLYALNVIQSEAYDDEGQLHLTVNMAPHK 409

Query: 405 IAENLRLASVSLGKITGCVD 424
           + + ++ A + + +I G   
Sbjct: 410 LEQLIKQAHLPIDEILGQNS 429


>gi|225021779|ref|ZP_03710971.1| hypothetical protein CORMATOL_01807 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945475|gb|EEG26684.1| hypothetical protein CORMATOL_01807 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 291

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 28/196 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G  N GKS+L NAL  + +AI  + P TTR  +   +  +   + + DT G+    
Sbjct: 1   MCFVGRPNTGKSTLTNALVGQKIAITANQPETTRHPIRGIVHRDDAQIIVVDTPGLHRPR 60

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFIFIGTKSD- 330
            ++ +   +       + DLI +    + K                     + I TK D 
Sbjct: 61  TLLGERLNEVVKDTYADMDLIAITIPADEKIGPGDRWILDNVRKVAPKTPLMGIVTKIDK 120

Query: 331 ------------LYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP--- 374
                       L+    E+ +   +S+ TGE  + L++ I S+L    K  P       
Sbjct: 121 VSRDQVALQLMALHKLLGEDSEVVPVSAVTGEQRDILLDVITSLLPEGPKFYPDDHVTDD 180

Query: 375 -SHKRHLYHLSQTVRY 389
            ++ R    + +    
Sbjct: 181 DTNTRIAELVREAALS 196


>gi|149377523|ref|ZP_01895264.1| GTPase [Marinobacter algicola DG893]
 gi|149358215|gb|EDM46696.1| GTPase [Marinobacter algicola DG893]
          Length = 432

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 92/253 (36%), Gaps = 25/253 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +E + 
Sbjct: 114 RARTHEGKLQVELAQLEHMSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRERIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +    +QG+   +  +   + ++G++NAGKS+LFN +    V    D    T
Sbjct: 173 SIHRRLEKVRKQRNQGRRARMRADIPTVSLVGYTNAGKSTLFNRITTSTV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L+L     V ++DT G          E  + T  E   A ++L + + +  + 
Sbjct: 232 LDPTLRRLELPDIGPVVMADTVGFIRHLPHKLVEAFRATLEETTEASILLHIIDCHDHRR 291

Query: 314 ISFPKN------------IDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
               +             I  + +  K DL   +    +           +S+ TGEGLE
Sbjct: 292 DENMEQVEEVLAEIGADEIPVLQVFNKIDLLDNFQPRVERNEDGVPVRVWVSAVTGEGLE 351

Query: 353 ELINKIKSILSNK 365
           +L + I   L+  
Sbjct: 352 DLFDTIVERLAED 364


>gi|319943734|ref|ZP_08018015.1| GTP-binding protein HflX [Lautropia mirabilis ATCC 51599]
 gi|319742967|gb|EFV95373.1| GTP-binding protein HflX [Lautropia mirabilis ATCC 51599]
          Length = 393

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 89/256 (34%), Gaps = 22/256 (8%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            TE + ++ +  M  + S L   W                   + ++      + +  + 
Sbjct: 103 STEGKLQVELARMQHQASRLVRMWSHLERQRGGIGVRGGPGETQLELDRRMLDDKIRRLR 162

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +       +         ++ ++G++NAGKS+LFN L +   A+  D    T D 
Sbjct: 163 TRLQKVDRQRRTRRRARQRGEALRVSLIGYTNAGKSTLFNRLTRAG-ALAADQLFATLDP 221

Query: 258 LTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           LT  L L  G  V +SDT G             + T  E   ADL+L + +  S      
Sbjct: 222 LTRRLGLGNGLEVVLSDTVGFIRNLPHGLVAAFRATLEETAEADLLLHVVDAGSPDRERQ 281

Query: 317 PKNIDFI------------FIGTKSDLYSTYTEEY--------DHLISSFTGEGLEELIN 356
            + ++ +             I  K DL     E             +S+ TG G++ L +
Sbjct: 282 IEAVNQVIAEIGAGEVEQLMIYNKIDLTGNVPEVRLDPYGRISGLALSAGTGAGVDALRD 341

Query: 357 KIKSILSNKFKKLPFS 372
            ++     + + +  +
Sbjct: 342 LLRERAQARAQAVDET 357


>gi|304404433|ref|ZP_07386094.1| GTP-binding proten HflX [Paenibacillus curdlanolyticus YK9]
 gi|304346240|gb|EFM12073.1| GTP-binding proten HflX [Paenibacillus curdlanolyticus YK9]
          Length = 429

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 96/267 (35%), Gaps = 22/267 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T              L          L+ +   I        + +      ++ ++D
Sbjct: 124 RAKTREGIIQVELAQLSYLLPRLSGHGKNLSRLGGGIGTRGPGESKLETDRRHIRDRISD 183

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +  +  ++  H    +         ++ ++G++NAGKS+L   +   +V  V +    T 
Sbjct: 184 LKGVLEEVVRHRKLHRERRKKAGVVQVALVGYTNAGKSTLLREMTDAEV-YVENQLFATL 242

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D  +  L+L  G  + ++DT G  +          + T  EV  ADL+L + + +S    
Sbjct: 243 DPTSRLLELPSGKEIVLTDTVGFIQNLPHDLVAAFRATLEEVCEADLVLHVVDSSSPTRA 302

Query: 315 SFPK------------NIDFIFIGTKSDLYSTYTEEY------DHLISSFTGEGLEELIN 356
              +                + +  K DL  +   E         +IS++    L+ L  
Sbjct: 303 DQMRVVDEVLDQLGAAGKPTLTVYNKRDLCPSEERELLPNGGGSMVISAYDRSDLDRLRQ 362

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHL 383
            I+  L+   +   F++P+ +  L  L
Sbjct: 363 AIQDHLTGDTRT--FAVPADRGDLIAL 387


>gi|325292781|ref|YP_004278645.1| GTP-binding protein HFLX [Agrobacterium sp. H13-3]
 gi|325060634|gb|ADY64325.1| GTP-binding protein HFLX [Agrobacterium sp. H13-3]
          Length = 479

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 83/222 (37%), Gaps = 31/222 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + I+ L+ ++   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 204 EADRRLLQDRIVKLERELEQVVRTRQLHRAKRRKVPHPIVALVGYTNAGKSTLFNRITGA 263

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 264 GV-LAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISDLPTHLVAAFRATLEEVLEADL 322

Query: 302 ILLLKEINSKKEISFPKN----------------IDFIFIGTKSDLYSTYTEEYDHLI-- 343
           IL +++++     +   +                   I +  K D       +       
Sbjct: 323 ILHVRDMSDPDNAAQSADVLRILGDLGIDEKEAEKRIIEVWNKVDRLEPEAHDAIIERAE 382

Query: 344 --------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                   S+ TGEG++ L+++I   LS    +    +   +
Sbjct: 383 GRSDIRAVSAVTGEGVDALMDEISGRLSGVLTETTVVLSVEQ 424


>gi|291283231|ref|YP_003500049.1| hypothetical protein G2583_2513 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291284317|ref|YP_003501135.1| hypothetical protein G2583_3660 [Escherichia coli O55:H7 str.
           CB9615]
 gi|290763104|gb|ADD57065.1| hypothetical protein G2583_2513 [Escherichia coli O55:H7 str.
           CB9615]
 gi|290764190|gb|ADD58151.1| hypothetical protein G2583_3660 [Escherichia coli O55:H7 str.
           CB9615]
 gi|320641438|gb|EFX10878.1| hypothetical protein ECO5101_07272 [Escherichia coli O157:H7 str.
           G5101]
 gi|320646799|gb|EFX15674.1| hypothetical protein ECO9389_10395 [Escherichia coli O157:H- str.
           493-89]
          Length = 290

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 103/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +     I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVPGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L+  G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LNGHGHSMVITDLPGVGESRDRDTEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+  ++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQRVLFVVMQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHR 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|313159118|gb|EFR58493.1| GTP-binding protein HflX [Alistipes sp. HGB5]
          Length = 405

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 15/183 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + + N I  LK D+     Q  +    R +  ++ ++G++N GKS+L N ++K +V  
Sbjct: 177 DRRIIRNRIAKLKEDLRKIDRQMAVQRSNRGSMVRVALVGYTNVGKSTLMNLISKSEV-F 235

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     +  +     +SDT G          E  K T  EV  ADL++ + 
Sbjct: 236 AENKLFATLDTTVRKVVFDNLPFLLSDTVGFIRKLPTELIESFKSTLDEVREADLLVHVV 295

Query: 307 EINSKK---EISFPK---------NIDFIFIGTKSDLYSTY-TEEYDHLISSFTGEGLEE 353
           +I+  +   +I   K         +     +  K D Y+    +E D   ++     L++
Sbjct: 296 DISHPQFEEQIDVVKQTLQDIGAGDKPVYLVFNKVDAYTYVKKDEDDLTPATRENLSLDD 355

Query: 354 LIN 356
           L  
Sbjct: 356 LKK 358


>gi|297571233|ref|YP_003697007.1| GTP-binding proten HflX [Arcanobacterium haemolyticum DSM 20595]
 gi|296931580|gb|ADH92388.1| GTP-binding proten HflX [Arcanobacterium haemolyticum DSM 20595]
          Length = 526

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 107/321 (33%), Gaps = 37/321 (11%)

Query: 96  LEELAKMPNLRLA----NPGEFSRRAFENG-KIDLLEAESLADLISSETEMQR----RLS 146
           L E+ +                 RRA E+  K+ +++  +L   I ++    R    ++ 
Sbjct: 164 LAEIVEFHGADTVIVDSELAPSQRRALEDVVKVKVIDRTALILDIFAQHAKSREGKAQVE 223

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +   L      W D ++       A               +     I      + + 
Sbjct: 224 LAQLE-YLLPRLRGWGDSMSRQAGGRVAGGAGIGSRGPGETQLELDRRRIRTRMAKLRAD 282

Query: 207 ISQGKLGEIIRNGYKIVIL-------GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           I   +   + R   +           G++NAGKSSL N L    V +   +  T    + 
Sbjct: 283 IKAMEPARVTRRASRTKKAVPAVVVVGYTNAGKSSLLNTLTGAGVLVENALFATLDPTVR 342

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------- 312
                +G    ++DT G          E  + T  EV  ADL+L + + +          
Sbjct: 343 RTQTADGREYTLTDTVGFVRNLPTQLVEAFRSTLEEVGQADLLLHVVDASHHDPVGQIQA 402

Query: 313 ------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIK 359
                 ++     +  + + +K+DL                 L+S+ +GEG+ EL  +I 
Sbjct: 403 VRSVLADVPGADTVRELIVLSKADLADPIDVAALRSRYPDSVLVSAVSGEGIAELEERID 462

Query: 360 SILSNKFKKLPFSIPSHKRHL 380
            +L      +  +IP  +  L
Sbjct: 463 QLLPRPQILIDLTIPFSRGDL 483


>gi|296436825|gb|ADH18995.1| GTP binding protein [Chlamydia trachomatis G/11222]
          Length = 447

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 95/265 (35%), Gaps = 23/265 (8%)

Query: 135 ISSETEMQRRLSM-EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           +++E  +Q  L+    +      ++G    + +          +  ++ ++     +E +
Sbjct: 141 LTAEAGLQVELAQARYLLPRFKRMWGHLSRQKSGGSGGGFVKGEGEKQIELDRRIVRERI 200

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           + +     ++     + +  +         ++G++N+GKS+L N L   D   V +    
Sbjct: 201 HKLSRDLKNVERQREERRKAKKRNQIPTFALIGYTNSGKSTLLNLLTSAD-TYVENKLFA 259

Query: 254 TRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T    L  G  V ++DT G             K T       D++L + + +   
Sbjct: 260 TLDPKTRRCVLPCGQRVLLTDTVGFIRKLPHTLVAAFKSTLEAALQEDILLHVVDASHPL 319

Query: 313 EISFPK------------NIDFIFIGTKSDLYS--------TYTEEYDHLISSFTGEGLE 352
            + + +                I +  K D  +                 +S+ TGEG+ 
Sbjct: 320 ALEYVETTKAILQELGITQPQVITVLNKMDKVADGVTASRLRLMSPNPVCVSAKTGEGIR 379

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK 377
           EL+  ++ ++  ++ +    +P  +
Sbjct: 380 ELLRSMEDMVQEEYPQATLHLPYKE 404


>gi|113868332|ref|YP_726821.1| GTPase [Ralstonia eutropha H16]
 gi|113527108|emb|CAJ93453.1| Predicted GTPase [Ralstonia eutropha H16]
          Length = 420

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 82/221 (37%), Gaps = 29/221 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + +      LK+D+S    Q       R   +   I ++G++NAGKS+LFNAL K 
Sbjct: 165 ELDRRMLDERAKRLKSDLSRLQRQHSTQRRARARNDTLSISLVGYTNAGKSTLFNALTKA 224

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
             A   D    T D  +  L L+G   V +SDT G             + T  E  +ADL
Sbjct: 225 G-AYAADQLFATLDTTSRRLFLDGLGNVVLSDTVGFIRDLPTQLVAAFRATLDETVHADL 283

Query: 302 ILLLKEINSK---KEISFPK---------NIDFIFIGTKSDLYSTYTEEYD--------- 340
           +L + + +S    ++I             +I  I +  K D      E+           
Sbjct: 284 LLHVVDASSPVRHEQIEQVNRVLAEINALDIPQIVVMNKIDAAPELLEQGPRLERDEDGI 343

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                +S+  G GL+ L   +  +      + P   P   R
Sbjct: 344 PTRVFLSAREGMGLDALREAVVEVAQWLASRPPEPQPYDPR 384


>gi|218960394|ref|YP_001740169.1| GTPase [Candidatus Cloacamonas acidaminovorans]
 gi|167729051|emb|CAO79962.1| GTPase [Candidatus Cloacamonas acidaminovorans]
          Length = 447

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 22/198 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDV 244
               + + + I  +   I +   Q +     R    KI ++G++NAGKS+LFN L    V
Sbjct: 188 EIDRRLIKDKIRKINKAIETIQHQKETQRKQREKAKKICLVGYTNAGKSTLFNQLTNAGV 247

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D  +  L L  G  V +SDT G             K T +EV++A+L+L
Sbjct: 248 -LVEDKLFATLDSTSRQLKLSTGNPVVLSDTVGFISKLPHHLIASFKATLMEVQDANLLL 306

Query: 304 LLKEINSKK------------EISFPKNIDFIFIGTKSD-----LYSTYTEEYD--HLIS 344
            + +++ ++            +    + I  I +  K D     L S     +     IS
Sbjct: 307 HIVDVSDERFEYYIQQVNSVLQQIGAETIPQILVFNKIDNVDSILVSLLESRFPEGVFIS 366

Query: 345 SFTGEGLEELINKIKSIL 362
           +  G  +++L+ K++ IL
Sbjct: 367 AIQGINIDKLLAKMEEIL 384


>gi|300113239|ref|YP_003759814.1| GTP-binding proten HflX [Nitrosococcus watsonii C-113]
 gi|299539176|gb|ADJ27493.1| GTP-binding proten HflX [Nitrosococcus watsonii C-113]
          Length = 382

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 26/201 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + + N I  L+  +     Q   G   R+      + ++G++N GKS+LFN L     
Sbjct: 168 DRRLIGNRIRQLRKRLERVRKQRDQGRRSRHKAQVPTVSLVGYTNVGKSTLFNRLT-ASR 226

Query: 245 AIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D     L L     + ++DT G          E  + T  E  +A L+L
Sbjct: 227 VLVDDRLFATLDPTLRRLRLAMVQPLILADTVGFIRHLPHELVEAFRSTLEETRDAALLL 286

Query: 304 LLKEINSKKEISFPKNIDFIF------------IGTKSDLYSTYTEEYD---------HL 342
            + + +S++  S    ++ +             +  K D         +           
Sbjct: 287 HVVDASSEERGSLIAQVNKVLQTIGAEEIPQLEVYNKIDQVEGCQPRLERDASGRVHRVW 346

Query: 343 ISSFTGEGLEELINKIKSILS 363
           +S+ +GEGLE L   +     
Sbjct: 347 LSATSGEGLELLRQALAEYFP 367


>gi|269926513|ref|YP_003323136.1| GTP-binding proten HflX [Thermobaculum terrenum ATCC BAA-798]
 gi|269790173|gb|ACZ42314.1| GTP-binding proten HflX [Thermobaculum terrenum ATCC BAA-798]
          Length = 441

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 104/272 (38%), Gaps = 25/272 (9%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T+  R    +  +   L  L   W          +        + +V    S+E + 
Sbjct: 128 RARTKEGRLQVELAQLEYRLPRLTRMWTHLSRQGVGGVGLRGPGETQLEVDRRQSRERIT 187

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +  H    +          + ++G++NAGKS+L N LA  DV +  D    T
Sbjct: 188 HIKREIEQVRKHRKILREHRKAEGLPVVSLVGYTNAGKSTLLNKLAGADV-LAEDKLFAT 246

Query: 255 RDVLTIDLDLEGYLVKI-SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI---NS 310
            D  T  + L   ++ + +DT G  +          + T  E+  AD+++ + +I   N+
Sbjct: 247 LDPTTRQVRLPAGMLSLWTDTVGFIQKLPTDLVAAFRATLEEILEADVLVHVVDITHENA 306

Query: 311 KKEISF---------PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFT-GEGL 351
           +++ +            +   +    K D         L S      ++++ S   G G+
Sbjct: 307 EEQAATVNETLRSLGAADKPTVVALNKVDKLAPDLDSGLPSLEDLPDNYVLISAELGWGI 366

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           + L++K++ +L +  ++L   +P  +  L  L
Sbjct: 367 DTLLSKVEQVLESNLRELDVLLPYSEGALVDL 398


>gi|170766018|ref|ZP_02900829.1| putative GTPase [Escherichia albertii TW07627]
 gi|170125164|gb|EDS94095.1| putative GTPase [Escherichia albertii TW07627]
          Length = 290

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 28/228 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G S AGKSSL NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ 
Sbjct: 39  IGIMGKSGAGKSSLCNALFQGEVTPVSDVYAGTREVQRFRLSGHGHSMVITDLPGVGESR 98

Query: 282 DIV-EKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDL 331
           D   E E + R    +   DL+L L + + +         + I    +   +F+ T++D 
Sbjct: 99  DRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFWRHILHRGHQQVLFVVTQAD- 155

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
            +    E+D      +    + +  K K  +   F+ +   +    R  + L   V  L 
Sbjct: 156 KTEPCHEWDMAGIQPSPAQAQNIREK-KEAVFRLFRPVHPVVAVSARTGWELDTLVSALM 214

Query: 392 MASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
            A  +     L      ++  E++R  +    + TG V      D IF
Sbjct: 215 TALPDHAASPLMTRLQDELRTESVRGQARE--QFTGAV------DRIF 254


>gi|30021804|ref|NP_833435.1| GTP-binding protein hflX [Bacillus cereus ATCC 14579]
 gi|29897360|gb|AAP10636.1| GTP-binding protein hflX [Bacillus cereus ATCC 14579]
          Length = 425

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 81  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 140

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 141 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 200

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 201 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 259

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      I   K            +I  I +  K 
Sbjct: 260 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKRLLSELEINHIPIITLYNKK 319

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  + +IK  +  K KK 
Sbjct: 320 DELHQNFIPFPKSDFLMTSAFEESDVLRIKEAIEMKMKKE 359


>gi|45383648|ref|NP_989570.1| GTPase Era, mitochondrial [Gallus gallus]
 gi|82243559|sp|Q8JIF5|ERAL1_CHICK RecName: Full=GTPase Era, mitochondrial; Short=GdERA; AltName:
           Full=ERA-like protein 1; Flags: Precursor
 gi|22093559|dbj|BAC06859.1| E. coli Ras-like protein homologue [Gallus gallus]
          Length = 461

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 15/130 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
            +I I+G  N+GKS+L N L  + V  V+    TTR      +  E   + I DT G+  
Sbjct: 91  LRISIIGAPNSGKSTLSNQLLGRKVFPVSKKVHTTRCKARGVITHEDTQLIILDTPGLTS 150

Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLLKEINS-----------KKEISFPKNIDFIF 324
             +     +E   +   +  +++ADL+L+L +++             K +S   +I  + 
Sbjct: 151 PMKAKRHKLEAAMLTDPWDSMKHADLVLVLVDVSDHWTRNSLSLEVLKCLSQFPHIPSVL 210

Query: 325 IGTKSDLYST 334
           +  K DL   
Sbjct: 211 VLNKVDLLKK 220


>gi|163941389|ref|YP_001646273.1| GTP1/OBG protein [Bacillus weihenstephanensis KBAB4]
 gi|229012878|ref|ZP_04170045.1| hypothetical protein bmyco0001_33170 [Bacillus mycoides DSM 2048]
 gi|229065855|ref|ZP_04201052.1| hypothetical protein bcere0026_58370 [Bacillus cereus AH603]
 gi|163863586|gb|ABY44645.1| GTP1/OBG protein [Bacillus weihenstephanensis KBAB4]
 gi|228715393|gb|EEL67224.1| hypothetical protein bcere0026_58370 [Bacillus cereus AH603]
 gi|228748422|gb|EEL98280.1| hypothetical protein bmyco0001_33170 [Bacillus mycoides DSM 2048]
          Length = 423

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 107/318 (33%), Gaps = 35/318 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKLTHIRSFI 172
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q    +  +    
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 173 EA----------DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
            A                + +      +  +++I      +  H  + +        +++
Sbjct: 140 LALSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKRQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 ALIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKS 329
                   + T  E   AD+IL + +      +                 I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEQTVKQLLSDLEINRIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           D     +  + +    + S+F    L  +   +++ +  +       IP  +  L  L +
Sbjct: 319 DKLHQNFIPFPKSDFLMTSAFEESDLLRIKEALETKMKEEMDDYQVEIPPSEGRLLTLLK 378

Query: 386 TVRYLEMASLNEKDCGLD 403
           T   L      E     D
Sbjct: 379 TETILTKMEFLEDKFVYD 396


>gi|301617385|ref|XP_002938122.1| PREDICTED: GTP-binding protein era homolog [Xenopus (Silurana)
           tropicalis]
          Length = 445

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 15/130 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I I+G  NAGKS+L N L  + V  V+    TTR      +      + + DT G+  
Sbjct: 98  LRIAIIGSPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQAQGVITEGETQLVLLDTPGMVT 157

Query: 280 TDDIV----EKEGIKRTFLEVENADLILLLKEINS-----------KKEISFPKNIDFIF 324
           T  +     EK  +   +  +++ADL+L+L +++             K +S  +NI  I 
Sbjct: 158 TSKVKRHNLEKSLLHDPWQSMKSADLVLVLLDVSDHWTRSSLNFEVLKCLSQFQNIPSIL 217

Query: 325 IGTKSDLYST 334
           +  K DL   
Sbjct: 218 VLNKVDLIKQ 227


>gi|228922418|ref|ZP_04085722.1| hypothetical protein bthur0011_34060 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837243|gb|EEM82580.1| hypothetical protein bthur0011_34060 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 447

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 103 NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 162

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 163 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 222

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 223 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 281

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      I   K            +I  I +  K 
Sbjct: 282 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKRLLSELEINHIPVITLYNKK 341

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  + +IK  +  K KK 
Sbjct: 342 DELHQNFIPFPKSDFLMTSAFEESDLLRIKEAIETKMKKE 381


>gi|228953980|ref|ZP_04116010.1| hypothetical protein bthur0006_33530 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805702|gb|EEM52291.1| hypothetical protein bthur0006_33530 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 424

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 104/292 (35%), Gaps = 35/292 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQGL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      I   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKRLLSELEINHIPVITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D     +  + +    + S+F    L  +   I++ +  +  +    IP  +
Sbjct: 319 DELHQNFIPFPKSDFLMTSAFEKSDLLRIKEAIETKMKKEMDRYRVEIPPSE 370


>gi|229179982|ref|ZP_04307327.1| hypothetical protein bcere0005_33280 [Bacillus cereus 172560W]
 gi|228603516|gb|EEK60992.1| hypothetical protein bcere0005_33280 [Bacillus cereus 172560W]
          Length = 424

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      I   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKRLLSELEINHIPVITLYNKK 318

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  + +IK  +  K KK 
Sbjct: 319 DELHQNFIPFPKSDFLMTSAFEESDLLRIKEAIETKMKKE 358


>gi|331650194|ref|ZP_08351267.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331041139|gb|EGI13296.1| conserved hypothetical protein [Escherichia coli M605]
          Length = 303

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 111/273 (40%), Gaps = 30/273 (10%)

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+    +    + E +   L  L   +S HI +  L ++  +     I+G S AGKSSL 
Sbjct: 8   FTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTSHEPVPGIMGKSGAGKSSLC 66

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLE 295
           NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ D   E E + R    
Sbjct: 67  NALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDI-- 124

Query: 296 VENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           +   DL+L L + + +         + I    +   +F+ T++D  +    E+D      
Sbjct: 125 LPELDLVLWLIKADDRALSVDEYFWRHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQP 183

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402
           +    + +  K    +   F+ +   +    R  + L   V  L  A  +     L    
Sbjct: 184 SPAQAQNIREK-TEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRL 242

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
             ++  E++R  +    + TG V      D IF
Sbjct: 243 QDELRTESVRAQARE--QFTGAV------DQIF 267


>gi|325959688|ref|YP_004291154.1| small GTP-binding protein [Methanobacterium sp. AL-21]
 gi|325331120|gb|ADZ10182.1| small GTP-binding protein [Methanobacterium sp. AL-21]
          Length = 329

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 26/162 (16%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RET 280
           VI G  N GKS+L   L   +   V D P TT  +    ++ +    +  DT G+  R  
Sbjct: 166 VIAGFPNVGKSTLLRQLTSAEPK-VADYPFTTTGIQIGHIEHKWMPYQFIDTPGLLDRPV 224

Query: 281 DDIVEKEGIKRTFLEVEN-ADLILLLKEINSKKEISFPK------------NIDFIFIGT 327
           DD+ E E      + +E+ ADL+  + + +                     N     +  
Sbjct: 225 DDMNEIELN--AMVALEHLADLVFFIFDASETSGFPLESQMKLYHGIKSIFNTPIQCVFN 282

Query: 328 KSD------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSI 361
           K D      L   Y E+ D+ I  S+  G G+ ELI K++  
Sbjct: 283 KMDLVEDTTLVDKYIEQLDNPIKLSAVEGIGVSELITKMEEF 324


>gi|325289350|ref|YP_004265531.1| small GTP-binding protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324964751|gb|ADY55530.1| small GTP-binding protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 677

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I  LG  N GKS+LFN L       V + PG T +         G    + D  G     
Sbjct: 7   IAFLGQPNTGKSTLFNGLTGS-RQHVGNWPGKTVEQKEGYFSCGGVSYTLVDLPGTYGLS 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTY 335
              E+E + R ++    AD + +L + +  +   F        ++    +    D+ +  
Sbjct: 66  AHSEEEIVTRDYIASGKADTVCILADASQLERSLFMLADYAGIHVPVFVVFNMMDIAAGQ 125

Query: 336 TEEYDH 341
           +++ DH
Sbjct: 126 SKQIDH 131


>gi|86357576|ref|YP_469468.1| GTP-binding protein [Rhizobium etli CFN 42]
 gi|86281678|gb|ABC90741.1| GTP-binding protein [Rhizobium etli CFN 42]
          Length = 441

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 31/225 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + I+ L+ ++   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 166 EADRRLLQDRIIKLERELEQVVRTRQLHRAKRRKVPHPIVALVGYTNAGKSTLFNRITGA 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 226 GV-LAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISDLPTHLVAAFRATLEEVLEADL 284

Query: 302 ILLLKEINSKKEISFPKNIDFIF----------------IGTKSDLYSTYTEEY------ 339
           IL +++++     +   ++  I                 +  K D       +       
Sbjct: 285 ILHVRDMSDPDNQAQSSDVMRILGDLGIDEAEAEKRLIEVWNKIDRLEPEVHDAMVQRAA 344

Query: 340 ----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                  +S+ +GEG++ L+ +I   LS    +    +P  K  L
Sbjct: 345 GASNVVAVSAVSGEGVDTLMEEISRRLSGVMTETTIRLPVDKLAL 389


>gi|222148577|ref|YP_002549534.1| GTP-binding protein HFLX [Agrobacterium vitis S4]
 gi|221735563|gb|ACM36526.1| GTP-binding protein HFLX [Agrobacterium vitis S4]
          Length = 444

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 99/273 (36%), Gaps = 36/273 (13%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           +S  E   ++ +  ++ +   L   W    TH+              + Q  + + +L D
Sbjct: 123 ASTKEGTLQVDLAHLNYQKGRLVRSW----THLERQRGGAGFMGGPGETQIEADRRMLQD 178

Query: 196 IL-FLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            +  L+ ++   +   +L    R       + ++G++NAGKS+LFN +    V +  D+ 
Sbjct: 179 RIVRLERELEQVVRTRQLHRAKRRKVPHPIVALVGYTNAGKSTLFNRITGAGV-LAEDML 237

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G  V +SDT G             + T  EV  ADLIL ++++  
Sbjct: 238 FATLDPTLRRMKLPQGRTVILSDTVGFISDLPTHLVAAFRATLEEVLEADLILHVRDMAD 297

Query: 311 KKE----------------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI----------S 344
                                  ++   I +  K D       +               S
Sbjct: 298 PDNGAQAGDVMRILSDLGIDEKERDERIIEVWNKIDRLEPEAHQAIAEKATGRQNVMAVS 357

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           + TGEG++ L+ +I   LS    +    +P  K
Sbjct: 358 AVTGEGVDALMAEIAQRLSGVVTETTVILPPDK 390


>gi|229047385|ref|ZP_04192982.1| hypothetical protein bcere0027_33720 [Bacillus cereus AH676]
 gi|229128982|ref|ZP_04257956.1| hypothetical protein bcere0015_34260 [Bacillus cereus BDRD-Cer4]
 gi|229146275|ref|ZP_04274649.1| hypothetical protein bcere0012_34200 [Bacillus cereus BDRD-ST24]
 gi|296504211|ref|YP_003665911.1| GTP-binding protein hflX [Bacillus thuringiensis BMB171]
 gi|228637194|gb|EEK93650.1| hypothetical protein bcere0012_34200 [Bacillus cereus BDRD-ST24]
 gi|228654480|gb|EEL10344.1| hypothetical protein bcere0015_34260 [Bacillus cereus BDRD-Cer4]
 gi|228723970|gb|EEL75318.1| hypothetical protein bcere0027_33720 [Bacillus cereus AH676]
 gi|296325263|gb|ADH08191.1| GTP-binding protein hflX [Bacillus thuringiensis BMB171]
          Length = 424

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      I   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKRLLSELEINHIPIITLYNKK 318

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  + +IK  +  K KK 
Sbjct: 319 DELHQNFIPFPKSDFLMTSAFEESDVLRIKEAIEMKMKKE 358


>gi|42523420|ref|NP_968800.1| GTP-binding protein Era [Bdellovibrio bacteriovorus HD100]
 gi|39575626|emb|CAE79793.1| GTP-binding protein Era [Bdellovibrio bacteriovorus HD100]
          Length = 303

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 8/121 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N L  + V+IV+  P TTR  +      E   V   D  G+ + D
Sbjct: 8   LGLIGQPNAGKSTLMNFLVDEKVSIVSSKPQTTRRRILGIWSTEKGQVIFVDAPGLIKAD 67

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
           + +     +     + ++D +L +  ++ +K        ++       +I + TK+D+  
Sbjct: 68  EGLNGFLAQEAHDVINSSDALLAIIAVDEEKPENAEKVIDLVSKSGKPWIAVITKTDIEE 127

Query: 334 T 334
            
Sbjct: 128 K 128


>gi|326403953|ref|YP_004284035.1| GTP-binding protein HflX [Acidiphilium multivorum AIU301]
 gi|325050815|dbj|BAJ81153.1| GTP-binding protein HflX [Acidiphilium multivorum AIU301]
          Length = 435

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 88/260 (33%), Gaps = 47/260 (18%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + I  L+ ++        L    RN      + ++G++NAGKS+LFNAL   
Sbjct: 168 EADRRLITDRIARLRRELDEVRRTRALHRAARNRVPYPVVALVGYTNAGKSTLFNALTGA 227

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V     +  T    + + +   G    +SDT G             + T  EV  AD+I
Sbjct: 228 TVHAQDQLFATLDPTMRLIVLPSGRQAILSDTVGFISDLPTELVAAFRATLEEVAAADII 287

Query: 303 LLLKEINSKKEISFPKNI-------------------DFIFIGTKSDLYSTYTEEYD--- 340
           L +++       +   ++                     I +  K DL      +     
Sbjct: 288 LHVRDCAHPDSAAQRADVVSVLDGMARSGMIDEGWSSRCIEVMNKIDLLDPAARDLPGAS 347

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFK--------KLPFSIPSHKRHLYHLSQTVRYLE 391
              +S+ +GE L+ L   I + L+   +             +    RH   LS+      
Sbjct: 348 AIAVSALSGENLDTLRATIDARLAGAMQVATYWLAPADGAGLAWLYRHGEVLSRA----- 402

Query: 392 MASLNEKDCGLDIIAENLRL 411
                    G D IA  +RL
Sbjct: 403 --------DGEDAIAIEVRL 414


>gi|229191828|ref|ZP_04318801.1| hypothetical protein bcere0002_34870 [Bacillus cereus ATCC 10876]
 gi|228591652|gb|EEK49498.1| hypothetical protein bcere0002_34870 [Bacillus cereus ATCC 10876]
          Length = 424

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      I   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKQLLSELEINHIPIITLYNKK 318

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  + +IK  +  K KK 
Sbjct: 319 DELHQNFIPFPKSDFLMTSAFEENDLLRIKEAIETKLKKE 358


>gi|218232256|ref|YP_002368510.1| GTP-binding protein [Bacillus cereus B4264]
 gi|218160213|gb|ACK60205.1| GTP-binding protein [Bacillus cereus B4264]
          Length = 425

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 98/280 (35%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++++      Q  L   +       G+L     Q            
Sbjct: 81  NNELTPSQIRNLSSVLNARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 140

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 141 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 200

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 201 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 259

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      I   K            +I  I +  K 
Sbjct: 260 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKRLLSELEINHIPIITLYNKK 319

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  + +IK  +  K KK 
Sbjct: 320 DELHQNFIPFPKSDFLMTSAFEESDLLRIKEAIETKMKKE 359


>gi|77462221|ref|YP_351725.1| GTP-binding protein Era [Rhodobacter sphaeroides 2.4.1]
 gi|126461083|ref|YP_001042197.1| GTP-binding protein Era [Rhodobacter sphaeroides ATCC 17029]
 gi|332560102|ref|ZP_08414424.1| GTPase Era [Rhodobacter sphaeroides WS8N]
 gi|77386639|gb|ABA77824.1| GTP-binding protein, Era-like [Rhodobacter sphaeroides 2.4.1]
 gi|126102747|gb|ABN75425.1| GTP-binding protein Era [Rhodobacter sphaeroides ATCC 17029]
 gi|332277814|gb|EGJ23129.1| GTPase Era [Rhodobacter sphaeroides WS8N]
          Length = 304

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 74/209 (35%), Gaps = 25/209 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   D
Sbjct: 3   ETTRAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGQAQIVFVD 61

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN-----------SKKEISFPKNIDF 322
           T G+      +++  +   +    +AD+I+LL E +                  P+    
Sbjct: 62  TPGLFRPRRRLDRAMVAAAWGGAADADVIVLLVEAHRGLTEGTQAIIDAMRDRIPQGQTV 121

Query: 323 IFIGTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
                K D             L   +      +IS+  G G+E+L   +  IL       
Sbjct: 122 ALAINKIDRVKAEVLLGLAQELNGAFPFAETFMISAEKGHGVEKLRRWLAGILPEGPWFY 181

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           P    +        ++  R      L+E+
Sbjct: 182 PEDQIADVPMRAIAAEITREKLTLRLHEE 210


>gi|312889473|ref|ZP_07749025.1| GTP-binding protein HflX [Mucilaginibacter paludis DSM 18603]
 gi|311298025|gb|EFQ75142.1| GTP-binding protein HflX [Mucilaginibacter paludis DSM 18603]
          Length = 394

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 80/231 (34%), Gaps = 17/231 (7%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           + D+ ++    Q   +   +           + +L       +  +      + Q  + +
Sbjct: 114 ILDIFAAR--AQTSQARTQVELAQLQYLLPRLTRLWTHLERQKGGIGMRGPGESQIETDR 171

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVT 248
            ++ + + L  +    I +    +    G   ++ ++G++N GKS++ N ++K +V    
Sbjct: 172 RIILNKISLLKERLKLIDRQNETQRKNRGQLIRVALVGYTNVGKSTIMNMISKSEV-FAE 230

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           +    T D     + ++     +SDT G          E  K T  EV  AD++L + ++
Sbjct: 231 NKLFATLDTTVRKVVIDNLPFLLSDTVGFIRKLPHHLVECFKSTLDEVREADILLHVVDV 290

Query: 309 NSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
           +        K            +   I +  K D Y     +        T
Sbjct: 291 SHPNFEDQIKTVNETLKELGAIDKPVITVFNKIDAYKPIPVDPSEPEIKLT 341


>gi|117624200|ref|YP_853113.1| hypothetical protein APECO1_1093 [Escherichia coli APEC O1]
 gi|115513324|gb|ABJ01399.1| conserved hypothetical protein [Escherichia coli APEC O1]
          Length = 303

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 103/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +     I+G S AGKSSL NAL + ++  V+D+   TR+V    
Sbjct: 33  SLSRHILE-HLRKLTSHEPVPGIMGKSGAGKSSLCNALFQGEITPVSDVHAGTREVQRFR 91

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L+  G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 92  LNGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 149

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+  ++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 150 RHILHRGHQRVLFVVMQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHR 207

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 208 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 263

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 264 ----DRIF 267


>gi|56551244|ref|YP_162083.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542818|gb|AAV88972.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 460

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 61/281 (21%), Positives = 101/281 (35%), Gaps = 38/281 (13%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E + ++ +  +  +   L   W   L   R          E +       + + + 
Sbjct: 125 AATAEGRLQVELAHLDYQAGRLVRTWTH-LERQRGGFGFLGGPGETQI--EADRRMIRDR 181

Query: 196 ILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  L+ D++       L    R       + ++G++NAGKS+LFN +   DV    D+  
Sbjct: 182 MAKLRRDLAQVTRTRGLHRARRKKAPWPVVALVGYTNAGKSTLFNRMTGADVM-AKDLLF 240

Query: 253 TTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D     + L G     +SDT G             + T  EV  ADLIL +++I  +
Sbjct: 241 ATLDPTMRQITLPGIDKAILSDTVGFVSDLPTQLVAAFRATLEEVTAADLILHVRDIAQE 300

Query: 312 KEISFPKN--------------------IDFIFIGTKSDLYSTYTEEY----------DH 341
              S  ++                    I  I    KSDL S    E             
Sbjct: 301 DSESEREDVERVLAEIGIAPVEDGGEFAIPVIEAWNKSDLLSEEAHESLAAEAARRDDVA 360

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           LIS++TGEG+E+L   +   LS   +     IP  +     
Sbjct: 361 LISAWTGEGIEDLRELVSQRLSEAHRLRHIDIPVTEGQAMA 401


>gi|332664960|ref|YP_004447748.1| GTP-binding proten HflX [Haliscomenobacter hydrossis DSM 1100]
 gi|332333774|gb|AEE50875.1| GTP-binding proten HflX [Haliscomenobacter hydrossis DSM 1100]
          Length = 404

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 92/268 (34%), Gaps = 40/268 (14%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           T  Q   +   +           +  L          +      + +  + + ++ D + 
Sbjct: 128 TRAQTAQAKTQVELAQMQYLLPRLRGLWTHLERQRGGIGMRGPGEKEIETDRRIIRDKIA 187

Query: 199 LKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
           L  +    I +  + +    G   ++ ++G++N GKS+L N L+K DV    +    T D
Sbjct: 188 LLKEKLKVIDRQAVTQRKNRGELIRVSLVGYTNVGKSTLMNLLSKSDV-FAENKLFATLD 246

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
                +  +     +SDT G          E  K T  EV  +D++L + +++  +    
Sbjct: 247 TTVRKVAWDSVPFLLSDTVGFIRKLPHHLIESFKSTLDEVLESDILLHVVDVSHPQHEDQ 306

Query: 317 PK------------NIDFIFIGTKSD----------LYSTYTEEYD-------------- 340
            +                +FI  K D          L     EE +              
Sbjct: 307 IRTVNETLDELKALQKPTLFIFNKIDRYREQHYDPFLEDDAKEEIEMSIRGNLKHLFLHD 366

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFK 367
             L+S+ + EG+ EL  K+  ++  ++ 
Sbjct: 367 NVLVSALSKEGINELREKVLKMVKEQYH 394


>gi|222099117|ref|YP_002533685.1| GTP-binding protein HflX [Thermotoga neapolitana DSM 4359]
 gi|221571507|gb|ACM22319.1| GTP-binding protein HflX [Thermotoga neapolitana DSM 4359]
          Length = 420

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 109/284 (38%), Gaps = 23/284 (8%)

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           R   E   +D  +         + +E    ++ M  +  EL  L G+  ++L+ +   I 
Sbjct: 96  REYLETEVLDRTQVILEIFARHATSEEGKLQVEMASLLYELPRLVGR-GEELSRLGGGIG 154

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
                    +V     K  ++ +     +I       +   + +    + I+G++NAGKS
Sbjct: 155 TRGPGEPLLEVLRRHIKNRISQLRKRLKEIEKEREVQRKQRLEKKIPHVSIVGYTNAGKS 214

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRT 292
           +L  +L + DV I  D    T + +T  L L+ G ++ +SDT G             K T
Sbjct: 215 TLLKSLTESDVYI-ADKLFATLEPVTRRLKLKSGKIILVSDTVGFIRKLPHTIVSAFKAT 273

Query: 293 FLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
             EV+ +D+++ L + +               E      I  I +  K DL      E  
Sbjct: 274 LEEVKYSDVLIHLVDASDPYAEEKMRASEKVLEEIGADRIPRILVFNKIDLCPEDRIEAL 333

Query: 341 HL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                    IS+    GL+ L+ K++ +LS +  +    +P  K
Sbjct: 334 KWKYPEALFISAEKKIGLDRLLEKLEEVLSQRDVQETIEVPIEK 377


>gi|166365910|ref|YP_001658183.1| ferrous iron transport protein B [Microcystis aeruginosa NIES-843]
 gi|166088283|dbj|BAG02991.1| ferrous iron transport protein B [Microcystis aeruginosa NIES-843]
          Length = 774

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 73/191 (38%), Gaps = 24/191 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           I ++G+ N GK++LFNAL   +     + PG T D       + G  + + D  G+    
Sbjct: 6   IALIGNPNCGKTTLFNALTGANQ-RTGNWPGVTVDRKEGRFQVNGEDITLVDLPGVYSLD 64

Query: 279 -ETDDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPKNIDFIFI-----GTKSD- 330
            E  +    E + R +L    ADL++ ++   N ++ +     I  + +         D 
Sbjct: 65  VEEGETGMDELVARDYLLSGEADLVINIVDAANLERNLYLTTQIMEMRLPMLIALNMMDV 124

Query: 331 -----------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                      L S   +     IS+  GEG+ EL  KI  ++          +      
Sbjct: 125 AKTRGIVVNPQLLSDRMDAIVVAISAVKGEGIGELKQKIGELV-GNINHTAAYVAYPAVI 183

Query: 380 LYHLSQTVRYL 390
              L++ + Y+
Sbjct: 184 EEALNEIIAYI 194


>gi|229071202|ref|ZP_04204427.1| hypothetical protein bcere0025_33760 [Bacillus cereus F65185]
 gi|228711943|gb|EEL63893.1| hypothetical protein bcere0025_33760 [Bacillus cereus F65185]
          Length = 424

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      I   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKRLLSELEINHIPVITLYNKK 318

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  + +IK  +  K KK 
Sbjct: 319 DELHQNFIPFPKSDFLMTSAFEESDLLRIKEAIETKMKKE 358


>gi|254416612|ref|ZP_05030363.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196176578|gb|EDX71591.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 461

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 14/164 (8%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
              L+N++     Q  L ++ +   +I   G  + GKS++ NAL  + +     + G T+
Sbjct: 49  QATLQNELEVL--QFSLDKLDQGVIRIATFGLVSRGKSAVVNALLGQKILQTGPLHGVTQ 106

Query: 256 DVLTIDLDLEG---YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK--EINS 310
              ++     G     V++ DT G+ E       +           ADLIL +   +I  
Sbjct: 107 WPKSVRWTPGGEGKVQVELIDTPGLDEVQGEARAQM---AQQVASEADLILFVVAGDITR 163

Query: 311 KKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
            + ++  +        I +  K DLY     E  +      G G
Sbjct: 164 TEYLALSELRQAQKPLILVFNKIDLYPEQDREAIYQQLQELGTG 207


>gi|320662211|gb|EFX29612.1| hypothetical protein ECO5905_10093 [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 290

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPKLDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TDAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|262278041|ref|ZP_06055829.1| small GTP-binding protein [alpha proteobacterium HIMB114]
 gi|262223795|gb|EEY74259.1| small GTP-binding protein [alpha proteobacterium HIMB114]
          Length = 141

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 11/132 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
             + I+G  N GKS++FN L   +++ V++I GTT   +  + + +   + + D  G+  
Sbjct: 5   INVSIIGKPNVGKSTIFNKLLGSNISTVSEISGTTVYPIISNKEYKNLNINLIDLGGLKK 64

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328
             ++ D  +K     T  +++  DL+  + + + +         ++   K  D I I  K
Sbjct: 65  KSKSHDDKQKLITSETLNQLKKTDLVFFVLDASDEITKNDKQLFKLVLNKLKDVIVIVNK 124

Query: 329 SDLYSTYTEEYD 340
           +DL     ++ +
Sbjct: 125 TDLIKENLKKRE 136


>gi|167463165|ref|ZP_02328254.1| GTP-binding protein, HSR1-related [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381934|ref|ZP_08055884.1| protease modulator-like protein with GTP-binding domain
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154074|gb|EFX46402.1| protease modulator-like protein with GTP-binding domain
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 425

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 86/252 (34%), Gaps = 20/252 (7%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T              L          L+ +   I        + +      +  +N+
Sbjct: 120 RAKTREGIIQVELAQLSYLLPRLSGHGKNLSRLGGGIGTRGPGESKLETDRRHIRRRINE 179

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +     ++  H +  +         ++ ++G++NAGKS+L   L + DV  V +    T 
Sbjct: 180 LKSQLQEVVKHRNLHRARRKKSGVVQVALVGYTNAGKSTLLRELTQADV-YVENQLFATL 238

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           D  +  + L  G  + ++DT G  +          + T  E   ADLIL + + +SK   
Sbjct: 239 DPTSRTMKLPSGKDIVLTDTVGFIQNLPHDLIAVFRATLEEANEADLILHVVDSSSKMRQ 298

Query: 312 ---------KEISFPKNIDFIFIGTKSDLYSTYTEE------YDHLISSFTGEGLEELIN 356
                     E         I +  K DL     ++          +S++    LE L  
Sbjct: 299 EQMRVVDEVLEELGASGKPAITVFNKIDLIPEKEQDMLTSPGKFLRLSAYQESDLERLKQ 358

Query: 357 KIKSILSNKFKK 368
            I+  +    K+
Sbjct: 359 TIQDYVMGDSKE 370


>gi|170717290|ref|YP_001784405.1| GTP-binding protein HSR1-related [Haemophilus somnus 2336]
 gi|168825419|gb|ACA30790.1| GTP-binding protein HSR1-related [Haemophilus somnus 2336]
          Length = 458

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 98/293 (33%), Gaps = 33/293 (11%)

Query: 148 EGMSGELSSLYGQWIDK----------LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q              L   +  +        + +      K  +  + 
Sbjct: 141 RSHEGKLQVELAQLRHLATRLVRRKTGLDQQKGAVGLRGPGETQLETDRRLIKVRITQLQ 200

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                ++   +Q +      +   I ++G++NAGKS+LFN L + +V  V D    T D 
Sbjct: 201 NRLEKVAKQRNQNRQTRRKADIPTISLVGYTNAGKSTLFNVLTQANV-YVADQLFATLDP 259

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS- 315
               L ++      ++DT G             K T  E   A L+L + ++   +++  
Sbjct: 260 TLKRLPIQDVGNCVLADTVGFIRELPHDLVSAFKSTLQETTEASLLLHVIDVADSRKLEN 319

Query: 316 -----------FPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELI 355
                          +  + +  K D         +           +S+   +GL+ L+
Sbjct: 320 MLTVNEVLSEIKANQVTTLLVYNKIDQVENIQPHIEFDEENQPIAVYLSAQLNQGLDLLV 379

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
             I+  LS++   L  ++ +    + H    +  +    +NE+   L  I  +
Sbjct: 380 EAIRQKLSHEILHLEINLAAQYGKIRHCFYQLNCVRQEKINEQGEFLLDIQID 432


>gi|332799884|ref|YP_004461383.1| GTP-binding proten HflX [Tepidanaerobacter sp. Re1]
 gi|332697619|gb|AEE92076.1| GTP-binding proten HflX [Tepidanaerobacter sp. Re1]
          Length = 413

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 96/233 (41%), Gaps = 27/233 (11%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           LK ++ +     K+    R+   I ++G++NAGKS+L NAL   DV    D    T D  
Sbjct: 173 LKEELKNVQKSRKIIIQSRSYPVISLVGYTNAGKSTLMNALTDADVK-TGDRLFETLDTT 231

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--KEIS 315
           T +L L +G  V +SDT G          E  + T  EV+ ADL++ + + +S    E  
Sbjct: 232 TRNLVLPDGRKVLLSDTVGFIRKLPHHLVEAFRATLEEVKEADLLIHVADGSSPTIDEDI 291

Query: 316 FPKNIDFIFIGT-----------------KSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           F  N     +G                   S     Y ++    IS+ TG+ L++L+  I
Sbjct: 292 FVVNSVLKELGAEQTPIIIAINKIDISGDASVFIEGYNKDNTIGISALTGKNLDKLLEAI 351

Query: 359 KSILSNKFKKLPFSIPS------HKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
             IL +  +K    IP        + H   L   + Y +     + +  + I+
Sbjct: 352 CRILPSNRRKAELFIPYDSGSAVDEIHKNGLINEIEYKDDGVKIKGEIDIAIL 404


>gi|284030367|ref|YP_003380298.1| GTP-binding protein Era [Kribbella flavida DSM 17836]
 gi|283809660|gb|ADB31499.1| GTP-binding protein Era [Kribbella flavida DSM 17836]
          Length = 312

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 10/125 (8%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+    +G  NAGKS+L NAL  + + I +  P TTR  +   +      + + DT G
Sbjct: 12  RSGF-ACFVGRPNAGKSTLTNALVGQKIVITSSKPQTTRHAVRGIVHRPDAQLILVDTPG 70

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327
           + +   ++ +             D+I +    N +          E +       I + T
Sbjct: 71  LHKPRTLLGERLNDVVKTTWAEVDVIAICLPSNERIGPGDRFLVTEAAKVAKTPKIALAT 130

Query: 328 KSDLY 332
           KSDL 
Sbjct: 131 KSDLV 135


>gi|229151907|ref|ZP_04280104.1| hypothetical protein bcere0011_34480 [Bacillus cereus m1550]
 gi|228631563|gb|EEK88195.1| hypothetical protein bcere0011_34480 [Bacillus cereus m1550]
          Length = 424

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 98/280 (35%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++++      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLNARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      I   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKRLLSELEINHIPIITLYNKK 318

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  + +IK  +  K KK 
Sbjct: 319 DELHQNFIPFPKSDFLMTSAFEESDLLRIKEAIETKMKKE 358


>gi|284992291|ref|YP_003410845.1| GTP-binding proten HflX [Geodermatophilus obscurus DSM 43160]
 gi|284065536|gb|ADB76474.1| GTP-binding proten HflX [Geodermatophilus obscurus DSM 43160]
          Length = 512

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 87/271 (32%), Gaps = 29/271 (10%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           E + Q  L+       +      W + L+       A               +     I 
Sbjct: 205 EGKAQVELAQMQY---MLPRLRGWGESLSRQAGGRVAGGGGIGTRGPGETKIETDRRRIR 261

Query: 198 FLKNDISSHIS---QGKLGEIIRNG----YKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
              + +   I+     +  +    G      + I G++NAGKSSL N L    V +   +
Sbjct: 262 ARVSKLRREIAGMATARATQRSSRGRNAVPSVAIAGYTNAGKSSLLNRLTGAGVLVENAL 321

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T    +      +G    ++DT G          +  + T  EV  ADL+L + + + 
Sbjct: 322 FATLDPTVRRAQSPDGREYTLTDTVGFVRHLPHQLVDAFRSTLEEVAAADLLLHVVDGSD 381

Query: 311 KKEISFPKNIDFIF------------IGTKSD-------LYSTYTEEYDHLISSFTGEGL 351
              +   + +  +             +  K D       L           +S+ TG G+
Sbjct: 382 PDPLGQIEAVRVVLGEIEAAAVPELIVVNKVDAMGEEDVLTLRRALPGAIWVSARTGVGI 441

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           E+L   + + L +   ++   +P  +  L  
Sbjct: 442 EQLREIVAARLPHPDVEVDVLVPYDRGDLVA 472


>gi|73541768|ref|YP_296288.1| small GTP-binding protein domain-containing protein [Ralstonia
           eutropha JMP134]
 gi|72119181|gb|AAZ61444.1| Small GTP-binding protein domain [Ralstonia eutropha JMP134]
          Length = 414

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 29/225 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + + +    LK+D++    Q +     R   +   I ++G++NAGKS+LFNAL K 
Sbjct: 165 ELDRRMLDDRAKRLKSDLARLQRQHRTQRRARARNDTLSISLVGYTNAGKSTLFNALTKA 224

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
             A   +    T D  +  + L+G   V +SDT G          E  + T  E  +ADL
Sbjct: 225 G-AYAANQLFATLDTTSRRMFLDGLGNVVLSDTVGFIRDLPTQLVEAFRATLDETVHADL 283

Query: 302 ILLLKEINSK---KEISF---------PKNIDFIFIGTKSDLYSTYTEEYD--------- 340
           +L + + +S    ++I              I  I +  K D      E+           
Sbjct: 284 LLHVVDASSPVRHEQIEQVNRVLAEIEASGIPQIIVMNKIDAAPELLEQGVRVERDEEGV 343

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                +S+  G GL+ L   I  +      + P   P   R    
Sbjct: 344 PTRVFLSAREGIGLDALRQSIVEVAQWLASRPPEPAPFDPRLAEQ 388


>gi|30250250|ref|NP_842320.1| GTP-binding protein Era [Nitrosomonas europaea ATCC 19718]
 gi|81838662|sp|Q82SJ6|ERA_NITEU RecName: Full=GTPase Era
 gi|30181045|emb|CAD86235.1| Type 2 KH domain [Nitrosomonas europaea ATCC 19718]
          Length = 296

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 70/198 (35%), Gaps = 21/198 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G  N GKS+L N L K+ ++I +    TTR  +   L          DT G +   
Sbjct: 11  ISIVGRPNVGKSTLLNHLIKQKISITSRKAQTTRHRIHGILTDAQSQFIFVDTPGFQTRH 70

Query: 282 DIVEKEGIKR-TFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYST 334
                + + R     +++ D+++ + E       + +     P+N+  + +  K DL   
Sbjct: 71  RSQLNQVMNRVVLQSMQDVDVVVFVVEAGRFGREDEQVLEQLPRNLPVVLVINKIDLLPD 130

Query: 335 YTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
             +    +               S+     L  LI  I+  L            + +   
Sbjct: 131 KLQLLPFMQKMADVFEFSAIVPVSALQNRQLSALIEAIRQHLPGNPFLFAEDEITDRSER 190

Query: 381 YHLSQTVRYLEMASLNEK 398
           +  ++ +R      + E+
Sbjct: 191 FLAAELLREKVFRQIGEE 208


>gi|313640169|gb|EFS04768.1| tRNA modification GTPase MnmE [Listeria seeligeri FSL S4-171]
          Length = 41

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             +DI+  ++  A   LG+ITG    ++LLD +F++FC+GK
Sbjct: 1   MPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 41


>gi|145296240|ref|YP_001139061.1| hypothetical protein cgR_2157 [Corynebacterium glutamicum R]
 gi|140846160|dbj|BAF55159.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 143

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI  + P TTR  +   +  +   + + DT G
Sbjct: 11  RSGF-VSFVGRPNTGKSTLTNALVGEKIAITANQPETTRHPIRGLVHRDNAQIIVVDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           +     ++ +   +       + DLI      N K
Sbjct: 70  LHRPRTLLGERLNEAVKDTYADVDLIGFTVPANEK 104


>gi|266624278|ref|ZP_06117213.1| ribosome-associated GTPase EngA [Clostridium hathewayi DSM 13479]
 gi|288863874|gb|EFC96172.1| ribosome-associated GTPase EngA [Clostridium hathewayi DSM 13479]
          Length = 245

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 35/191 (18%)

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEV 296
             ++  IV+DI GTTRD +  ++   G      DTAG+R    I    E+  I RT   V
Sbjct: 1   MGENRVIVSDIAGTTRDAVDTEIVHNGTEYVFIDTAGLRRKSKIKEELERYSIIRTVTAV 60

Query: 297 ENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           E AD+++++ +              I+  +    I    K D                  
Sbjct: 61  ERADVVVVVIDATEGVTEQDAKIAGIAHERGKGIIVAVNKWDAIEK------------ND 108

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           + + E  NKIK  L+         I +      +  +    ++M   N+           
Sbjct: 109 KTIYEYTNKIKDTLAFMPYAEYVFISAKTGQRTN--RLFELIDMVRQNQT---------- 156

Query: 409 LRLASVSLGKI 419
           LR+A+  L +I
Sbjct: 157 LRVATGVLNEI 167


>gi|119492107|ref|ZP_01623560.1| ferrous iron transport protein B [Lyngbya sp. PCC 8106]
 gi|119453317|gb|EAW34482.1| ferrous iron transport protein B [Lyngbya sp. PCC 8106]
          Length = 612

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 15/194 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  N GKS+ F+ +     A V + PG T D+L  ++ + G  V+  D  GI + 
Sbjct: 19  RVALIGMPNTGKSTFFSRITGV-AAYVGNWPGVTVDLLQANVKINGETVEFVDLPGIYDL 77

Query: 281 DDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISF---PKNIDFIFIGTKSDLYST 334
           +   E E + RTFLE    DL++++    +I+ +  ++       +  + +   SD    
Sbjct: 78  NGYSEDEKVVRTFLERYAIDLVIVVLNAAQIDRQIRLALQVKALGLPAVVMLNMSDEAKH 137

Query: 335 YTEEYDHLISSFTGEGLEELIN--------KIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           Y  E +    S   E    LI+        K    L ++ +K    +  +        + 
Sbjct: 138 YGVEINSKELSRHLEMPVFLISAKYGKGYMKAYETLCHQLEKTELPVIVNDIPQVLAQRG 197

Query: 387 VRYLEMASLNEKDC 400
              ++   +  KD 
Sbjct: 198 KISVDEIEIILKDA 211


>gi|323453654|gb|EGB09525.1| hypothetical protein AURANDRAFT_71340 [Aureococcus anophagefferens]
          Length = 1193

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 77/227 (33%), Gaps = 48/227 (21%)

Query: 217  RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
            R G+ + ++G  N GKS+L NAL  +D+ I      TTR  +    + +GY + +SDT G
Sbjct: 869  RAGF-VGVVGSPNVGKSTLTNALLGQDLCITNSKAQTTRHRILGVANGDGYQLVLSDTPG 927

Query: 277  I-RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----------------N 319
            I  +    ++   +        +A+ +L + ++    E+                     
Sbjct: 928  ILCDPAYALQSTMMTAAKAAARDAECVLFVTDVFEDPEVVAESAAWLDAQLASRAGDEPK 987

Query: 320  IDFIFIGTKSDLYSTYTEEYD------------------------------HLISSFTGE 349
               +    K DL     + Y                                 +S+ TG 
Sbjct: 988  PPVVVALNKVDLLGVDDDGYPLLGEAASRRVGSLDDAVARARAAVPGAAAVVPLSAATGA 1047

Query: 350  GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
            G++EL   + S L            + +   +  ++ +R   +A   
Sbjct: 1048 GVDELARALASELPESAALFDDEYFTDRPSRFFAAEIIREKILAQFA 1094


>gi|298736228|ref|YP_003728754.1| GTP-binding protein Era [Helicobacter pylori B8]
 gi|298355418|emb|CBI66290.1| GTP-binding protein Era [Helicobacter pylori B8]
          Length = 301

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 82/218 (37%), Gaps = 28/218 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +R  + ++ +  + +    + +A+L + L  ++      +E         I    K D  
Sbjct: 68  LRHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLNLCQKPHILALNKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQKYASQFVDLVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAENLRL 411
                 + +R     +L      E D  +D   E  R+
Sbjct: 188 MRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERM 225


>gi|229080959|ref|ZP_04213473.1| hypothetical protein bcere0023_36000 [Bacillus cereus Rock4-2]
 gi|228702376|gb|EEL54848.1| hypothetical protein bcere0023_36000 [Bacillus cereus Rock4-2]
          Length = 424

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSTVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      I   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKRLLSELEINHIPVITLYNKK 318

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  + +IK  +  K KK 
Sbjct: 319 DELHQNFIPFPKSDFLMTSAFEESDLLRIKEAIETKMKKE 358


>gi|56752391|ref|YP_173092.1| hypothetical protein syc2382_d [Synechococcus elongatus PCC 6301]
 gi|56687350|dbj|BAD80572.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 513

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 101/238 (42%), Gaps = 22/238 (9%)

Query: 194 NDILFLKNDI--SSHISQGKL--GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
             +  + ++I   + + + +    E+ R   ++VI G  +AGK+SL NAL  + V  V  
Sbjct: 97  QQVNQIADEIAREALLERSRQIAAELERGELRVVIFGTGSAGKTSLINALLGRIVGKVEA 156

Query: 250 IPGTTRDVLTIDLDLE--GYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLK 306
             G+T +  T  L L   G  + I+DT GI E       +E + R       ADL+L + 
Sbjct: 157 TMGSTEEGRTYRLGLRGVGRDILITDTPGILEAGVAGRLREKLARQLAV--EADLLLFVV 214

Query: 307 EINSKKE-----ISFPKNIDFI-FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           + + ++      +   +       I  K+DLY     E          +GL    + + +
Sbjct: 215 DNDLRRSELEPCLDLARIGKRSLLIFNKADLYEDRDREAILARLRERLKGLIPPSDILTA 274

Query: 361 ILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           I S +  +LP  S    +  +  L      L+  +   +  G D+IA+N+ L S  LG
Sbjct: 275 IASPQPVRLPDGSFLQPEPEVTTL------LKRMAAVLRSEGEDLIADNILLQSQRLG 326


>gi|332995407|gb|AEF05462.1| GTP-binding protein HflX [Alteromonas sp. SN2]
          Length = 429

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 89/269 (33%), Gaps = 25/269 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+          + ++G++NAGKS+LFN +    V    D    T
Sbjct: 173 AILRRLEKVQKQREQGRRSRKRAEIPTVSLVGYTNAGKSTLFNTITDAHV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----- 308
            D     +DL+      ++DT G             K T  E + ADL+L + +I     
Sbjct: 232 LDPTLRKIDLKDVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADLLLHVVDIADAKY 291

Query: 309 -------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                  N   E      I  + I  K D         +           +S+ TGEG E
Sbjct: 292 RETIDEVNDVLEEIDANEIQQLLICNKIDKLDDIKPRIERNEDGVPTRVWLSAQTGEGTE 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            L   +   LS         IP  +  L 
Sbjct: 352 LLGQALTECLSKSMVNYTLKIPPAQSSLR 380


>gi|164687577|ref|ZP_02211605.1| hypothetical protein CLOBAR_01218 [Clostridium bartlettii DSM
           16795]
 gi|164603351|gb|EDQ96816.1| hypothetical protein CLOBAR_01218 [Clostridium bartlettii DSM
           16795]
          Length = 428

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 90/246 (36%), Gaps = 27/246 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAK- 241
               + +LN    ++ ++       +   + R   N   + ++G++NAGKS+L N L K 
Sbjct: 166 EVDKRHILNRAADIRKELREVKQNRETQRVQRLKSNIPIVALVGYTNAGKSTLLNELIKT 225

Query: 242 ------KDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFL 294
                 +    V D+   T DV      L       + DT G          E  K T  
Sbjct: 226 HKDYETEKEVFVKDMLFATLDVTLRKATLPNKRDFLVVDTVGFVSKLPHDLVEAFKATLE 285

Query: 295 EVENADLILLLKEI-NSKKEISF-----------PKNIDFIFIGTKSDLYS----TYTEE 338
           EV+ ADLIL + +  NS  E+               +   I +  K D           E
Sbjct: 286 EVKYADLILHVIDATNSSFELQKQTTESVLKELGADDKKTIIVYNKIDRLELDIYPRNRE 345

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               IS+  G  ++ L+  I++ L     ++   +P  K +++   +    ++     E 
Sbjct: 346 DRIYISAKKGINMDILLKMIENALMEDTYQVKLLLPYDKGNIFSRIKEKYNVDSFEYVEN 405

Query: 399 DCGLDI 404
              L++
Sbjct: 406 GTQLEV 411


>gi|37523711|ref|NP_927088.1| hypothetical protein glr4142 [Gloeobacter violaceus PCC 7421]
 gi|35214716|dbj|BAC92083.1| glr4142 [Gloeobacter violaceus PCC 7421]
          Length = 586

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           E ++Q  L+       L        + L+ +   I        + +      +  +  + 
Sbjct: 324 EGKLQVELAQLQY---LMPRLTGKGEALSRLGGGIGTRGPGETKLETDRRVIRRRIAKLQ 380

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
              +D+ +H ++ +     +      ++G++NAGKS+L NAL      +V D    T D 
Sbjct: 381 GEVDDLQAHRARMRARRQRKEVPVFALVGYTNAGKSTLLNALTGAG-TLVADQLFATLDP 439

Query: 258 LTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  L+L  G  V ++DT G          +  + T  EV  AD +L + ++++   ++ 
Sbjct: 440 TTRRLELPTGDAVLLTDTVGFVHDLPPQLIDAFRATLEEVTEADALLHVVDLSNPAWMNH 499

Query: 317 PKNIDFI------------FIGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINK 357
            + +  I             +  K D  S+    +          IS+  G G   L   
Sbjct: 500 IQAVQHILESLPIATGPQLLVFNKVDRVSSQVRAFAEQEYPLAIFISAKNGWGFLALREA 559

Query: 358 IKSIL 362
           +   +
Sbjct: 560 LTRWM 564


>gi|319408442|emb|CBI82097.1| GTP-binding protein HflX [Bartonella schoenbuchensis R1]
          Length = 453

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 29/211 (13%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + + I  ++ ++ + +    L    R   +   + ++G++NAGKS+LFN L+   V
Sbjct: 183 DRRLLQDKITRIRRELENVVKTRALHRAKRKKTSHPVVALVGYTNAGKSTLFNRLSDAGV 242

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T    L   +   G  + +SDT G             + T  EV  ADLI+ 
Sbjct: 243 LTKDMLFATLDPTLRKVILPHGQTIFLSDTVGFISNLPTHLIAAFRATLEEVIEADLIIH 302

Query: 305 LKEINSKK---------------EISFPKNIDFIFIGTKSDLYSTYT-----------EE 338
           +K+I+                   +        + +  K+D+   +T             
Sbjct: 303 VKDISDPDHRAQAQDVLEILSSLGVDIGNTDRIVEVWNKADMLDEHTLNVLQTSARTLLN 362

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKL 369
              +IS+ TGEGL +L+  I+  LS + + +
Sbjct: 363 PALMISALTGEGLNQLLITIERRLSGEMQSV 393


>gi|303236066|ref|ZP_07322669.1| GTP-binding protein HflX [Prevotella disiens FB035-09AN]
 gi|302483939|gb|EFL46931.1| GTP-binding protein HflX [Prevotella disiens FB035-09AN]
          Length = 421

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 17/196 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  +  LK  +   I + K+ +    G   ++ ++G++N GKS++ N LAK +
Sbjct: 181 EMDRRIILQRMTLLKQRLVE-IDKQKVTQRKNRGRLIRVALVGYTNVGKSTIMNMLAKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + LE     ++DT G          +  K T  EV  ADL++
Sbjct: 240 V-FAENKLFATLDTTVRKVVLENLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLV 298

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEG 350
            + +I+        +            +   + +  K D Y+    EE D    +     
Sbjct: 299 HVVDISHPDFEEQLQVVNETLKELECADKPSMIVFNKIDNYTWEEKEEDDLTPMTKENVS 358

Query: 351 LEELINKIKSILSNKF 366
           LEEL     + L+   
Sbjct: 359 LEELKRTWMAKLNEDC 374


>gi|262189578|ref|ZP_06047982.1| GTP-binding protein HflX [Vibrio cholerae CT 5369-93]
 gi|262034542|gb|EEY52878.1| GTP-binding protein HflX [Vibrio cholerae CT 5369-93]
          Length = 429

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 118/344 (34%), Gaps = 53/344 (15%)

Query: 70  PSPESFTGE----DSAE-FHVHGGIAVV-NGIL-----EELAKMPNLRLANPGEFSRRAF 118
           P P+ F GE    + AE   +HG   V+ N  L       L ++   R+ +        F
Sbjct: 52  PHPKYFVGEGKAQEIAEAVQMHGANVVIFNHALSPAQERNLERLCQCRVIDRTGLILDIF 111

Query: 119 ENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
                             + T E + ++ +  +    + L   W   L   +  I     
Sbjct: 112 AQ---------------RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGP 155

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
              + +      +E +  IL     ++    QG+          I ++G++NAGKS+LFN
Sbjct: 156 GETQLETDRRLLRERIKAILRRLEKVAKQREQGRRARSRAEIPTISLVGYTNAGKSTLFN 215

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEV 296
            + +  V    D    T D     +DL       ++DT G             K T  E 
Sbjct: 216 RITEAGV-YAADQLFATLDPTLRKIDLVDVGPAVLADTVGFIRHLPHDLVAAFKATLQET 274

Query: 297 ENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYD--- 340
           + AD++L + + + +             +EI     +  + +  K D     +   +   
Sbjct: 275 QEADILLHVVDASDERFRENIQAVETVLQEID-AHEVPTLLVMNKIDNLEEQSPRIERDD 333

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                   IS+  G G+E L   +   L+++  +    IP   +
Sbjct: 334 EGVPRVVWISAMQGSGIELLFEALSEHLASQVVEHHLRIPPRHQ 377


>gi|119474821|ref|ZP_01615174.1| GTP-binding protein HflX [marine gamma proteobacterium HTCC2143]
 gi|119451024|gb|EAW32257.1| GTP-binding protein HflX [marine gamma proteobacterium HTCC2143]
          Length = 433

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 115 RARTHEGKLQVELAQLQHMSTRLVRGWTH-LERQKGGIGLRGPGETQLESDRRLLRARIK 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I    + +     QG+      +   + ++G++NAGKS+LFN L + +V  V D    T
Sbjct: 174 AISKRLDKVRKQRDQGRRARSRADIPTVSLVGYTNAGKSTLFNTLTQANV-YVADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-INSKK 312
            D     + +  +  + ++DT G          E  + T  E   +DL++ + +  + ++
Sbjct: 233 LDPTLRRVSIPDFGPIVLADTVGFIRHLPHKLVEAFRATLEEAAQSDLLIHVIDCADEER 292

Query: 313 EISFPK-----------NIDFIFIGTKSDLYSTYTE--------EYDHLISSFTGEGLEE 353
           E +  +            I  + I  K DL  +                +S+  G GL+ 
Sbjct: 293 EDNIAQVEVVLNEIGADAIPRLEIYNKIDLVDSKPRIDRDKDGIARRVWVSAQNGSGLDL 352

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           +   +   L         ++   +  L   
Sbjct: 353 IEQCLAEWLGEDIIHGRLTLDVGQGRLRAA 382


>gi|332304698|ref|YP_004432549.1| GTP-binding proten HflX [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172027|gb|AEE21281.1| GTP-binding proten HflX [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 432

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 89/265 (33%), Gaps = 25/265 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLKHISTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRARIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   +      + ++G++NAGKS+LFN + + +V    D    T
Sbjct: 173 SIQARLGKVQKQREQGRRARVRAEIPTLALVGYTNAGKSTLFNTITQSEV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     ++L+      ++DT G             K T  E + ADL+L + +      
Sbjct: 232 LDPTLRRIELQDVGPAILADTVGFIRHLPHDLVAAFKATLQETQQADLLLHVVDYSDDQF 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N   +      I  + I  K D         D           +S+  G G E
Sbjct: 292 RENIDQVNEVLDEIDSDEIPQLMICNKIDRMDGVEPRIDRDENGIPTRVWMSAQQGLGTE 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK 377
            L   +   L+    +    IP  +
Sbjct: 352 LLFEALSDCLAQNMVRYQLRIPPQE 376


>gi|218133163|ref|ZP_03461967.1| hypothetical protein BACPEC_01025 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992036|gb|EEC58040.1| hypothetical protein BACPEC_01025 [Bacteroides pectinophilus ATCC
           43243]
          Length = 437

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 75/197 (38%), Gaps = 23/197 (11%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           ++ +  +    +++  H    +      +     I+G++NAGKS+L N L   DV +  D
Sbjct: 179 RDRIAQLKSELDEVVRHREVTRQQRKKTSMPVAAIVGYTNAGKSTLLNRLTDADV-LSED 237

Query: 250 IPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D  T +L L     V ++DT G          +  + T  E   AD+I+ + + 
Sbjct: 238 KLFATLDPTTRELVLTDKSRVLLTDTVGFIRKLPHHLIDAFRSTLEEARYADIIVHVVDA 297

Query: 309 NSKKEISFPK------------NIDFIFIGTKSDLYS---------TYTEEYDHLISSFT 347
           ++       +            +   I +  K D+            +  +    IS+ T
Sbjct: 298 SNDDMERQMEIVYDTLQELEVGDKPVITLFNKCDMLDMTDSSAKPRDFKADKTVYISAKT 357

Query: 348 GEGLEELINKIKSILSN 364
           G+GL+E    +  IL  
Sbjct: 358 GQGLDEFEEALGDILRG 374


>gi|332295774|ref|YP_004437697.1| GTP-binding proten HflX [Thermodesulfobium narugense DSM 14796]
 gi|332178877|gb|AEE14566.1| GTP-binding proten HflX [Thermodesulfobium narugense DSM 14796]
          Length = 418

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 100/271 (36%), Gaps = 24/271 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            + T+  +          L S    W   L+ +   I        ++++   +    ++ 
Sbjct: 112 RASTKQGKLQVELARLNYLLSQTSGWGKILSRLGGGIGTRGPGETKKEIDKRTLSLKISR 171

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +      I       K    I N   I ++G++NAGKS+L N L    V +V D   +T 
Sbjct: 172 LKNEIKLIEKRNKIIKKKRNISNFPNISLVGYTNAGKSTLMNVLTNSTV-LVRDQLFSTL 230

Query: 256 DVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D  T  +   +   V ++DT G          E  K T  ++  ++ +L + + +   EI
Sbjct: 231 DTKTAIIKFNDDTKVFLTDTVGFIRKLPHRLIEAFKATLSQISESNFLLHVVDASKPIEI 290

Query: 315 SFP--------------KNIDFIFIGTKSDLYSTYTEEYD--------HLISSFTGEGLE 352
                             +I  I +  K D  +  T  ++          IS+ TG G++
Sbjct: 291 IKQDIKSVNEVLKEINSNDIPSILVFNKIDKCTNLTNVHELAELYKPYCFISAITGYGID 350

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           +L+ KIK  L      +   +P  K  + +L
Sbjct: 351 KLLEKIKYFLYPNRIIIKIFLPHEKTKIINL 381


>gi|294102235|ref|YP_003554093.1| ferrous iron transport protein B [Aminobacterium colombiense DSM
           12261]
 gi|293617215|gb|ADE57369.1| ferrous iron transport protein B [Aminobacterium colombiense DSM
           12261]
          Length = 677

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 19/208 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + + G+ N GK+SLFN L       V + PG T +        EG    + D  GI  
Sbjct: 4   ITLALAGNPNTGKTSLFNLLTGS-RQHVGNWPGVTVERKEGHFSYEGMNFTLVDLPGIYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                  E +   FL  E  +L + + + ++ +                I     +D+  
Sbjct: 63  LGAASIDEQVASEFLIKEKPELAITVVDASNLERSLYLVVQMLEAGQPLIIALNMADVAE 122

Query: 334 TYTEEY------------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                                  +   +GLE+L+ ++K    N       +IP  ++   
Sbjct: 123 NKGIRIHREKLEKALGVPVVPTVARERKGLEDLVKRVKDRFENGVSLSLLAIPYGEKVEQ 182

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENL 409
            L +  + +  A L E +    + +  +
Sbjct: 183 SLDRIAKNVSSALLREANIDRRLASIKI 210


>gi|166363299|ref|YP_001655572.1| GTP-binding protein [Microcystis aeruginosa NIES-843]
 gi|166085672|dbj|BAG00380.1| GTP-binding protein [Microcystis aeruginosa NIES-843]
          Length = 522

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 106/262 (40%), Gaps = 40/262 (15%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISS--HISQGKLGEI--IRNGYKIVILGHSNAGKSSL 235
           E+ +    + K +   +  +++ ++    I++ +  E    R   KI++ G  +AGK+SL
Sbjct: 90  EKTEAAGETLKAIRQQVEQIQDKVTQQVFINRSQEIERSLARKEVKIIVFGTGSAGKTSL 149

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTF 293
            NAL  + V  V    GTT    T  L ++G    ++I+DT GI E      +   +   
Sbjct: 150 INALIGQMVGNVEATMGTTEKGETYSLKMKGVNREIQITDTPGILEIGAAGGQRE-QLAR 208

Query: 294 LEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
                ADL+L + + + ++    P           + +  K DLYS    +         
Sbjct: 209 QLATEADLLLFVIDNDIRQSEYGPLLRLIDIGKRSLLVFNKIDLYSDEDRDII------- 261

Query: 348 GEGLEELINKIKSIL-----------SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396
              L++L  ++K ++               +     + + +  +  L + +  +  A   
Sbjct: 262 ---LKQLRERLKGVILSADIIAVAANPQPVQLTGGQMITPEPDILALIKRLASVLRAE-- 316

Query: 397 EKDCGLDIIAENLRLASVSLGK 418
               G D++A+N+ L S  LG+
Sbjct: 317 ----GEDLVADNILLQSQRLGE 334


>gi|212704395|ref|ZP_03312523.1| hypothetical protein DESPIG_02450 [Desulfovibrio piger ATCC 29098]
 gi|212672116|gb|EEB32599.1| hypothetical protein DESPIG_02450 [Desulfovibrio piger ATCC 29098]
          Length = 544

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 24/187 (12%)

Query: 199 LKNDISSHISQ--GKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           L+ ++     Q         R G  +  ++G++NAGKS+L N L + +V +  +    T 
Sbjct: 339 LRKELDQLRRQRAFTRSRRARRGIPMAALVGYTNAGKSTLLNNLTRSEV-LAENKLFATL 397

Query: 256 DVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D  T  L       + ++DT G          +  + T  E+E+ADL++ + + +    +
Sbjct: 398 DPTTRRLRFPAEREIILADTVGFIRNLPKELMDAFRATLEELESADLLVHVADASHPDLL 457

Query: 315 SFP------------KNIDFIFIGTKSDLYS-----TYTEEYDH--LISSFTGEGLEELI 355
                          +++  I +  K DL          + + H   IS+ TG+GL+ L+
Sbjct: 458 QQITSVETILEELELQHMPRILLLNKWDLLDVPARAELADAFPHAIPISARTGDGLKRLL 517

Query: 356 NKIKSIL 362
             ++++L
Sbjct: 518 EVLENML 524


>gi|159486891|ref|XP_001701470.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158271652|gb|EDO97467.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 403

 Score = 70.3 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 98/262 (37%), Gaps = 24/262 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E Q ++ +     +L  L   W   L  +    +      ++ ++     ++   
Sbjct: 122 RAQTREGQLQVELAQTEYQLPRLTKMWSH-LDRVGGGGQVKGTGEKQIEIDKRLLRDKAA 180

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +      + +H  Q +          + I G++NAGKS+L N +    V +  D    T
Sbjct: 181 QLRRELEAVRTHRRQYREKRSSTPIPVVGICGYTNAGKSTLLNTITGAGV-LAEDQLFAT 239

Query: 255 RDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D  T  + L+G   + +SDT G  +          + T  E+++A +IL + +I+    
Sbjct: 240 LDPTTRRVRLKGNKEILLSDTVGFIQKLPTELVAAFRATLEEIQDASIILHVVDISHPNA 299

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYDH--------LISSFTGEGLEE 353
            +  +            +I  +    K D  S   E             IS  TGEGLE+
Sbjct: 300 AAQNEAVMQVLTELGVDHIPIVTAWNKIDACSNPDEVRRIAAKRTRTVCISGMTGEGLEQ 359

Query: 354 LINKIKSILSNKFKKLPFSIPS 375
           L+  +   L     ++   +P 
Sbjct: 360 LMEVLGGELEKAMVEVHALLPY 381


>gi|32265807|ref|NP_859839.1| GTP-binding protein Era [Helicobacter hepaticus ATCC 51449]
 gi|32261856|gb|AAP76905.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 306

 Score = 70.3 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDT 274
           R G+ +  LG  NAGKS+L N L  +++A+V+     TR  L   +        +   DT
Sbjct: 14  RAGF-VATLGRPNAGKSTLLNHLLGENLALVSHKANATRKQLQLIVPYAPLNAQIIFVDT 72

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKS 329
            GI   + ++ +  + +    + + D+ L L  ++         +   +    I + +K 
Sbjct: 73  PGIHHQEKLLNQYMLSQALRALSDYDMALYLAPVSDDIGHYEHFLELSQGKKHILLLSKI 132

Query: 330 D 330
           D
Sbjct: 133 D 133


>gi|256419636|ref|YP_003120289.1| GTP-binding proten HflX [Chitinophaga pinensis DSM 2588]
 gi|256034544|gb|ACU58088.1| GTP-binding proten HflX [Chitinophaga pinensis DSM 2588]
          Length = 396

 Score = 70.3 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 98/269 (36%), Gaps = 25/269 (9%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T   +    +      L  L G W    +H+             E       + +  
Sbjct: 120 RARTAQAKVQVELAQYQYILPRLKGMW----SHLERQGGGIGSRGPGETEIETDRRIIKE 175

Query: 195 DILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
            +  L+  ++    Q       R    ++ ++G++N GKS++ N ++K +V    +    
Sbjct: 176 KVALLRKRLAEIDKQSLTQRKDRGEYIRVALVGYTNVGKSTIMNLMSKSEV-FAENKLFA 234

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           T D  T  +  +     +SDT G          E  K T  EV  +D++L + +++  + 
Sbjct: 235 TLDTTTRKVVFDQTAFLLSDTVGFIRKLPHHLVESFKSTLDEVRESDILLHVVDVSHPQY 294

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
               +            +   I +  K DLY   T  +D      T +  ++++N++K  
Sbjct: 295 EDQVEVVNRTLHELKAFDKPIIMVFNKMDLYEEQT--FDKW---LTEDIKQDILNQLKEN 349

Query: 362 LSNKFKKLPFSIPSHKR-HLYHLSQTVRY 389
              + +     I + +R ++  L  T+  
Sbjct: 350 WQTRTQGNCVFISATERKNVEELRATILS 378


>gi|229916145|ref|YP_002884791.1| GTP-binding proten HflX [Exiguobacterium sp. AT1b]
 gi|229467574|gb|ACQ69346.1| GTP-binding proten HflX [Exiguobacterium sp. AT1b]
          Length = 415

 Score = 70.3 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 110/273 (40%), Gaps = 18/273 (6%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  M+  L  L GQ   +L+ +   I        + +      K  +++I        +H
Sbjct: 129 LAQMNYLLPRLIGQ-GTQLSRLGGGIGTRGPGETKLESDRRHIKRRIDEITKQLEGTVAH 187

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE- 265
             + +        +++ ++G++NAGKS++FN L   D     ++   T D LT +L+L  
Sbjct: 188 RGRYRERRKENRVFQVALVGYTNAGKSTIFNRLTDADTYEQDELFA-TLDPLTRELELPR 246

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF- 324
           G  V I+DT G             + T  EV  ADLIL + + ++   ++     + +  
Sbjct: 247 GGKVLITDTVGFIRDLPTKLVAAFRSTLEEVVGADLILHVIDASNPHYLNQIDTTNAVLE 306

Query: 325 -----------IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
                      +  K D  +        LIS+   E +  L   ++  +++   ++   +
Sbjct: 307 ELGASEVPQLEVYNKKDRLTEDFVGGPLLISAIASEDIVTLTGALEDKIADILTRVHVIL 366

Query: 374 PSHKRHLYH-LSQTVRYLEMASLNEKDCGLDII 405
           P      YH   + +  LE + L+  D  ++++
Sbjct: 367 PVTAFEHYHPAKEAMYRLEESFLD--DGSVELV 397


>gi|126731325|ref|ZP_01747132.1| GTP-binding protein HflX [Sagittula stellata E-37]
 gi|126708236|gb|EBA07295.1| GTP-binding protein HflX [Sagittula stellata E-37]
          Length = 396

 Score = 70.3 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 102/269 (37%), Gaps = 31/269 (11%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ M  +S + + L   W   L   R  +       E +       + +   
Sbjct: 92  AATREGVLQVEMAALSYQRTRLVRAWTH-LERQRGGLGFVGGPGETQI--EADRRAIDEQ 148

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           ++ L+  +   +   +L    R       + ++G++NAGKS+LFN L   +V    D+  
Sbjct: 149 LVRLRRQLEKVVKTRELHRKARAKVPYPIVALVGYTNAGKSTLFNRLTGAEVM-AKDMLF 207

Query: 253 TTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D     + L  G  V +SDT G             + T  EV  AD+I+ +++I+  
Sbjct: 208 ATLDPTMRAVRLPTGADVILSDTVGFISDLPTELVAAFRATLEEVLAADVIVHVRDISHP 267

Query: 312 KEISFPKNIDFIF-------------IGTKSDLYS----------TYTEEYDHLISSFTG 348
           +  +  +++  I              +  K D  S             +     +S+ TG
Sbjct: 268 ETDAQAEDVRTILDGLGVDEGTPQIELWNKIDRLSGDVKVATEARADRDAGIFAVSAVTG 327

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHK 377
           EGL+  ++ +   L  + +    ++   +
Sbjct: 328 EGLDGFLDAVTEALGEERRTEALTLAFDE 356


>gi|116252041|ref|YP_767879.1| GTP-binding protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256689|emb|CAK07777.1| putative GTP-binding protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 441

 Score = 70.3 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 31/209 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + I+ L+ ++   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 166 EADRRMLQDRIIKLERELEQVVRTRQLHRAKRRKVPHPIVALVGYTNAGKSTLFNRITGA 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 226 GV-LAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISDLPTHLVAAFRATLEEVLEADL 284

Query: 302 ILLLKEINSKKEISFPKNIDFIF----------------IGTKSDLYSTYTEEY------ 339
           IL +++++     +   ++  I                 +  K D       +       
Sbjct: 285 ILHVRDMSDADNQAQSSDVMRILNDLGIDEAEAEKRLIEVWNKIDRLEPEVHDAMVQKSA 344

Query: 340 ----DHLISSFTGEGLEELINKIKSILSN 364
                  +S+ +GEG++ L+ +I   LS 
Sbjct: 345 GASNVVAVSAVSGEGVDTLMEEISRRLSG 373


>gi|114773228|ref|ZP_01450463.1| GTPase, HflX [alpha proteobacterium HTCC2255]
 gi|114546347|gb|EAU49256.1| GTPase, HflX [alpha proteobacterium HTCC2255]
          Length = 431

 Score = 70.3 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 91/263 (34%), Gaps = 25/263 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRARIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+          + ++G++NAGKS+LFN +   +V    D    T
Sbjct: 173 TILKRLEKVQKQREQGRRARKRNEIPTLSLVGYTNAGKSTLFNTITDANV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     ++L       ++DT G             K T  E + ADL+L + +      
Sbjct: 232 LDPTLRKIELADVGTAILADTVGFIRHLPHDLVAAFKATLQETQEADLLLHVVDYADDQY 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLE 352
                 +N   E     +I  + I  K D     T   D+          IS+  G G+E
Sbjct: 292 GENMTQVNDVLEEIDAGDIPQLIICNKIDRLEGITPRIDYDEDGRPIRVWISAQQGLGVE 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS 375
            L   +   L+   +    +IP 
Sbjct: 352 LLQTALTECLAQTMQVQTLNIPP 374


>gi|153808667|ref|ZP_01961335.1| hypothetical protein BACCAC_02966 [Bacteroides caccae ATCC 43185]
 gi|149128493|gb|EDM19711.1| hypothetical protein BACCAC_02966 [Bacteroides caccae ATCC 43185]
          Length = 418

 Score = 70.3 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 85/207 (41%), Gaps = 19/207 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +LN +  LK  + + I + K  +    G   ++ ++G++N GKS++ N L+K +
Sbjct: 181 EMDRRIILNRMSLLKERL-AEIDKQKATQRKNRGRMIRVALVGYTNVGKSTMMNLLSKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     +SDT G          +  K T  EV  ADL++
Sbjct: 240 V-FAENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLV 298

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            + +I+    +++I                 I +  K D Y TY E+    ++  T E L
Sbjct: 299 HVVDISHPGFEEQIEVVNKTLAEIGGGGKPMILVFNKIDAY-TYVEKAPDDLTPRTKENL 357

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKR 378
              + ++      K +     I + +R
Sbjct: 358 T--LEELMKTWMAKMEDNCLFISARER 382


>gi|254481040|ref|ZP_05094286.1| GTP-binding proten HflX [marine gamma proteobacterium HTCC2148]
 gi|214038835|gb|EEB79496.1| GTP-binding proten HflX [marine gamma proteobacterium HTCC2148]
          Length = 436

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 90/270 (33%), Gaps = 24/270 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 128 RARTHEGKLQVELAQLQHVATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRIRIK 186

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+     +    + ++G++NAGKS+LFN +    V    D    T
Sbjct: 187 SITARLEKVRKQRDQGRRSRKRQEIPTVSLVGYTNAGKSTLFNYITDSGV-YAADQLFAT 245

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L+LE    V ++DT G          E  K T  E  NADL+L + +  S + 
Sbjct: 246 LDPTLRRLELENVGPVVLADTVGFIAHLPHKLVEAFKATLEETLNADLLLHVIDAASDER 305

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTE--------EYDHLISSFTGEGLEE 353
                             I  + I  K DL                   +S+ TG+G+  
Sbjct: 306 EDNIYQVHEVLQEIGADEIPRLEIYNKLDLLEQKPRIDRNADGIPERVWLSAATGDGVSL 365

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           L+  +  ++          I   +  L   
Sbjct: 366 LLQAVSEVVGQDMVDEQLEIAPDQGGLRAA 395


>gi|258647896|ref|ZP_05735365.1| GTP-binding protein HflX [Prevotella tannerae ATCC 51259]
 gi|260851729|gb|EEX71598.1| GTP-binding protein HflX [Prevotella tannerae ATCC 51259]
          Length = 421

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 82/218 (37%), Gaps = 19/218 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q K     R    ++ ++G++N GKS+L N ++K +V
Sbjct: 181 EMDRRIILNRMALLKQRLADIDRQKKTQRGNRGKMIRVALVGYTNVGKSTLLNLMSKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + ++     ++DT G          +  K T  EV  ADL+L 
Sbjct: 241 -FAENKLFATLDTTVRKVVIDNLPFLLTDTVGFIRKIPTDLVDSFKSTLDEVREADLLLH 299

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           + +I+    +++I   +             I +  K D Y    +E D L          
Sbjct: 300 VVDISHPDFEEQIQVVEKTLAELGTSGRPSILVFNKIDAYRWIEKEADDLTPKQK----- 354

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
           E I+  +   +   K     I    R   ++ Q    L
Sbjct: 355 ENISLAELQQTYMAKMQENCIFISAREKTNIEQLRELL 392


>gi|26247146|ref|NP_753186.1| hypothetical protein c1272 [Escherichia coli CFT073]
 gi|227888003|ref|ZP_04005808.1| possible GTP-binding protein [Escherichia coli 83972]
 gi|26107547|gb|AAN79746.1|AE016759_20 Hypothetical protein yeeP [Escherichia coli CFT073]
 gi|227834999|gb|EEJ45465.1| possible GTP-binding protein [Escherichia coli 83972]
 gi|307553020|gb|ADN45795.1| conserved hypothetical protein containing GTP-binding domain
           [Escherichia coli ABU 83972]
          Length = 290

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    L   F+ +  
Sbjct: 137 RHILHRGHQRVLFVVTQAD-KTEPCHEWDMAGIKPSPAQAQNIREK-TEALFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-----D-IIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L     D +  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDGLRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|332295395|ref|YP_004437318.1| ferrous iron transport protein B [Thermodesulfobium narugense DSM
           14796]
 gi|332178498|gb|AEE14187.1| ferrous iron transport protein B [Thermodesulfobium narugense DSM
           14796]
          Length = 665

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 75/219 (34%), Gaps = 32/219 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + I ++G+ N GKS++FN L   + A V + PG T +            + + D  GI  
Sbjct: 4   FTIALIGNPNVGKSAIFNELTGAN-AHVGNWPGVTVEKKEGKFVYNDTKINVVDLPGIYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                  E I R ++  E  DL++ + +  +         +        + +    DL  
Sbjct: 63  LTASSIDERIARDYIVREKPDLVVCIVDSTNLVRNLYLFVLLKELGAKTLLVLNMIDLVE 122

Query: 334 TYTE-----------EYDHLISSFTGEGLEELINKI--------KSILSNKFKKLPFSI- 373
              E                 S+    G++EL   I             N  K +  SI 
Sbjct: 123 NKIEFDESKLSESLKTRIVKTSATKKIGIDELKKAIYEEFHKDQGEFFVNYGKDIESSIK 182

Query: 374 -PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
                 +   LS   R+L +  L +      +I+E L+ 
Sbjct: 183 RIESLLNSTELSYNKRFLAIKLLEQDS----VISEELKR 217


>gi|314933486|ref|ZP_07840851.1| GTP-binding protein HflX [Staphylococcus caprae C87]
 gi|313653636|gb|EFS17393.1| GTP-binding protein HflX [Staphylococcus caprae C87]
          Length = 411

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 101/273 (36%), Gaps = 27/273 (9%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + +     ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 120 LRARSREGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 178

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++     ++   
Sbjct: 179 NEIKHQLQSVVEHRERYRNKREQNQVFQVALVGYTNAGKSSWFNVLANEE-TYEKNLLFA 237

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T  + + EG+ + ISDT G  +          K T  E ++A+L+L + + +  +
Sbjct: 238 TLDPKTRQIQINEGFNLIISDTVGFIQKLPTTLVAAFKSTLEEAKDANLLLHVVDASHPE 297

Query: 313 EISF------------PKNIDFIFIGTKSDL-YSTYTEEYDHLISSFTGEGLEELINKIK 359
             +                I    I  K DL               F     E   +K+K
Sbjct: 298 HRTQYDTVNQIINDLNMDQIPQAVIFNKKDLCTEAQASPVAKSPYVFVSSRDENDKDKVK 357

Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
           +++ ++ K          RHL +  +TV  +  
Sbjct: 358 NLMIDEIK----------RHLNYYEETVDSVNA 380


>gi|294508447|ref|YP_003572505.1| GTP-binding protein hflX [Salinibacter ruber M8]
 gi|294344775|emb|CBH25553.1| GTP-binding protein hflX [Salinibacter ruber M8]
          Length = 455

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 86/248 (34%), Gaps = 31/248 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI-VILGHSNAGKSSLFNALAKKDV 244
               + +   +  L+  +     Q       R GY    ++G++NAGKS+L NALA +D+
Sbjct: 167 EMDRRIIDKRMAKLREKLDEIDRQRTTQRKGREGYTTASLVGYTNAGKSTLLNALADEDL 226

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D  T  ++L+    V +SDT G          E  + T  EV  +D+++
Sbjct: 227 -EAEDRLFATLDATTRTVELDSNKEVLMSDTVGFIRKLPHRLIESFRSTLDEVRESDVLI 285

Query: 304 LLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD--------HLI 343
            + ++                     ++   + +  K D     T               
Sbjct: 286 HVVDVTHPNYEEQMRVVAETLGELEARDKPTLVVFNKIDAMEDRTLLRRLRRNHPDAVFA 345

Query: 344 SSFTGEGLEELINKIKSILSNKFKK--------LPFSIPSHKRHLYHLSQTVRYLEMASL 395
           S+  G GLE L   +  ++   + +         P  I    R    + ++  Y E   L
Sbjct: 346 SALRGIGLETLKEDLLDLIEQDYVERVAYIPVSEPEVIAQVHRLGDVIEESYEYAENGGL 405

Query: 396 NEKDCGLD 403
                 ++
Sbjct: 406 ESLKGEVE 413


>gi|114799526|ref|YP_760704.1| putative GTP-binding protein HflX [Hyphomonas neptunium ATCC 15444]
 gi|114739700|gb|ABI77825.1| putative GTP-binding protein HflX [Hyphomonas neptunium ATCC 15444]
          Length = 442

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 109/320 (34%), Gaps = 37/320 (11%)

Query: 135 ISSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + T+  R    +  +  E S L   W                   + +       + +
Sbjct: 119 LRARTKEGRLQVELARLLYERSRLVRTWTHLERQRGGGGFLSGPGESQLEADRRMLDDKI 178

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             +    +D+       + G        + ++G++N+GKS+LFN L   DV    D+P  
Sbjct: 179 VRLRRDLDDVKRTREVQRQGRRRSGKPVVALVGYTNSGKSTLFNRLTGSDV-FAKDMPFA 237

Query: 254 TRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D     LDL       + DT G          +  + T  E   ADL++ +++  S  
Sbjct: 238 TLDPTIRRLDLPTLGEAALIDTVGFITDLPTHLIDSFQATLEESLQADLLIHVRDRASAS 297

Query: 313 EISFPKN----------------IDFIFIGTKSD------------LYSTYTEEYDHLIS 344
           ++   ++                   I    K D            L +   +     +S
Sbjct: 298 DMEQAEDVALVLERLEKESGLPLPPMIEAWNKMDALAPERAESLTGLAAITDDPPAAAVS 357

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
           + TGEG++ L+  I+  L     ++  ++ P+  +    L Q    L      +    L 
Sbjct: 358 ALTGEGVDALLALIEKSLLRGRTEISLTLGPADGKARAWLHQNGEVLTETQREDGQTDL- 416

Query: 404 IIAENLRLASVSLGKITGCV 423
                LRL++  LG+  G  
Sbjct: 417 ----TLRLSTERLGQFRGEF 432


>gi|73669657|ref|YP_305672.1| GTP-binding protein [Methanosarcina barkeri str. Fusaro]
 gi|72396819|gb|AAZ71092.1| GTP-binding protein [Methanosarcina barkeri str. Fusaro]
          Length = 333

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 81/204 (39%), Gaps = 22/204 (10%)

Query: 183 DVQNFSSKEVLNDILFLKNDISS-HISQGKLGEIIR------NGYKIVILGHSNAGKSSL 235
           D+     KE    +  +   I+   +   +   I+R      +   IVI G+ N GKSS 
Sbjct: 116 DLPEPIRKEAFGRLASIIKSINKDLLFLNEARNILRKLPDVQDEPTIVIAGYPNVGKSSF 175

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            + +   +  I    P TT+ V       +    ++ DT G+ +       +  ++    
Sbjct: 176 VSKITGANPEI-APYPFTTKGVTIGHFMRDSMRYQVMDTPGLLDRPMSERNDIERQAITA 234

Query: 296 VENAD-LILLLKEINSK------------KEISFPKNIDFIFIGTKSDLYS-TYTEEYDH 341
           +   D +++ + + +               EI     +  + +  K+D       +E + 
Sbjct: 235 IHYLDAVVMFMIDPSESCGYEIEAQKHLLVEIRENFKLPLLVVANKADRSEFKKLDEVEF 294

Query: 342 LISSFTGEGLEELINKIKSILSNK 365
            IS+ TGEG+E+++N++  ++  K
Sbjct: 295 NISTVTGEGIEDVMNRLMQMIEEK 318


>gi|183597426|ref|ZP_02958919.1| hypothetical protein PROSTU_00690 [Providencia stuartii ATCC 25827]
 gi|183601093|ref|ZP_02962586.1| hypothetical protein PROSTU_04720 [Providencia stuartii ATCC 25827]
 gi|188019435|gb|EDU57475.1| hypothetical protein PROSTU_04720 [Providencia stuartii ATCC 25827]
 gi|188023258|gb|EDU61298.1| hypothetical protein PROSTU_00690 [Providencia stuartii ATCC 25827]
          Length = 290

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 78/195 (40%), Gaps = 17/195 (8%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +L ++I     I ++G + AGKSSL NAL +  ++ V+D+ G TR      + +  + + 
Sbjct: 25  QLSQLINYSPTIGLMGKTGAGKSSLLNALFQSQLSPVSDVSGCTRQAQRFSMTMNNHTLT 84

Query: 271 ISDTAGIRET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------ 317
             D  G+ E+ +   E   + R    +   DLI+ + + + +   S              
Sbjct: 85  FIDLPGVGESLERDKEYHQLYRNL--LPELDLIIWVLKADDRAWSSDEQCYRFLTKKCGY 142

Query: 318 KNIDFIFIGTKSDLYSTYT--EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +   F+F+  ++D        +EY H  SS     L+     + +        +  S   
Sbjct: 143 QPNQFLFVLNQADKIEPCRQWDEYKHQPSSEQTYNLKLKQQAVITAFKPHHPVITVSAVE 202

Query: 376 HKRHLYHLSQTVRYL 390
           + +      Q ++ L
Sbjct: 203 NYQLTELAEQLIQAL 217


>gi|269219563|ref|ZP_06163417.1| GTP-binding protein HflX [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210805|gb|EEZ77145.1| GTP-binding protein HflX [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 499

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 20/173 (11%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           V++G++NAGKSSL N L    V +   +  T    +       G    ++DT G      
Sbjct: 275 VVVGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRTQTASGREYTLADTVGFVRQLP 334

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKK-------------EISFPKNIDFIFIGTKS 329
               E  + T  E   AD+++ + + +                E+   +    I + +KS
Sbjct: 335 TQLVEAFRSTLEEAGEADVLVHVVDASHHDPVGQVKAVRKVLAEVPGTREAREIVVLSKS 394

Query: 330 DLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           DL                  +S  TGEG++EL   I+  L     ++   +P 
Sbjct: 395 DLADPVDLAALRSRFPGSIAVSCLTGEGVDELRAAIEEALPQPEIEIAVVVPY 447


>gi|94971366|ref|YP_593414.1| GTP-binding protein, HSR1-related [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553416|gb|ABF43340.1| GTP-binding protein, HSR1-related protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 451

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 94/272 (34%), Gaps = 24/272 (8%)

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            RA E   ID  +   L   I ++        ++    +L  L  +   +   +      
Sbjct: 128 ERALEARVIDRTQ---LILDIFAKHARTAEGQLQVELAQLQYLLPRLGGRGIEMSQLGGG 184

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV---ILGHSNAG 231
                  E       +++   I  ++  +       +     R    +    ++G++NAG
Sbjct: 185 IGTRGPGETQLETDRRKINRRIRHVQKQLEDVRRIRRQQRARRENVPVAVVALVGYTNAG 244

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KS+LFNAL K  V   + +  T    L   +      V +SDT G             + 
Sbjct: 245 KSTLFNALTKAGVYASSKMFATLDPTLRGVMLPSKRQVLLSDTVGFIRNLPTTLVSAFRA 304

Query: 292 TFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYST----- 334
           T  EV+ A L+L + +  S   +   +            +   I +  K DL +T     
Sbjct: 305 TLEEVQRAALLLHVADATSPVALEQQRQVEDVLGELEVQDKPQIHVMNKIDLLATSKRAA 364

Query: 335 -YTEEYDHLISSFTGEGLEELINKIKSILSNK 365
                    +S+ +G G+E L++ I   ++  
Sbjct: 365 LINSGKVVHVSAKSGLGMEALLHAIDEAITED 396


>gi|41582279|gb|AAS07893.1| GTP-binding protein HflX [uncultured marine bacterium 463]
          Length = 423

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 90/270 (33%), Gaps = 24/270 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 115 RARTHEGKLQVELAQLQHVATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRIRIK 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+     +    + ++G++NAGKS+LFN +    V    D    T
Sbjct: 174 SITARLEKVRKQRDQGRRSRKRQEIPTVSLVGYTNAGKSTLFNYITDSGV-YAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L+LE    V ++DT G          E  K T  E  NADL+L + +  S + 
Sbjct: 233 LDPTLRRLELENVGPVVLADTVGFIAHLPHKLVEAFKATLEETLNADLLLHVIDAASDER 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTE--------EYDHLISSFTGEGLEE 353
                             I  + I  K DL                   +S+ TG+G+  
Sbjct: 293 EDNIYQVHEVLQEIGADEIPRLEIYNKLDLLEQKPRIDRNADGIPERVWLSAATGDGVSL 352

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           L+  +  ++          I   +  L   
Sbjct: 353 LLQAVSEVVGQDMVDEQLEIAPDQGGLRAA 382


>gi|20093443|ref|NP_613290.1| GTPase [Methanopyrus kandleri AV19]
 gi|19886262|gb|AAM01220.1| Predicted GTPase [Methanopyrus kandleri AV19]
          Length = 352

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 113/331 (34%), Gaps = 62/331 (18%)

Query: 97  EELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM------ 150
           EEL  +   R     E +R++F  G     E  + +  I +      +L  + +      
Sbjct: 16  EELIDVAFRRAERAAEGTRKSFY-GTRTPPEVRARSIEI-ARVNTACQLVQDRLWEIVRK 73

Query: 151 ---SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN------ 201
                EL   Y +  D L  I     +  D      +     +E    I   ++      
Sbjct: 74  TPNLDELHPFYRELADALAGIDRLKSSLADVHTVAKIARLIREEYTRKIKRARDPRTAAE 133

Query: 202 -------DISSHISQGKLGEIIR-----------------NGYKIVILGHSNAGKSSLFN 237
                   ++S I + K+G+ +R                   + + + G  N GK++L  
Sbjct: 134 LRRQAFGRLASTIRR-KVGDALRFLRKVQPKLVDLPAIDTEMFTVTLAGFPNVGKTTLMT 192

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            L      I    P TT+ +    ++   Y V++ DT G+ E  +       ++    ++
Sbjct: 193 VLTGSRPEI-APYPFTTKGIQVGYMERP-YPVQMLDTPGLLERPEEERNPVERQAIAALK 250

Query: 298 NA-DLILLLKEINS------KKEISFPK------NIDFIFIGTKSDLYSTYTE-----EY 339
           +  D +L L +         ++++          ++    + TK+DL   + E     E 
Sbjct: 251 HVTDAVLFLIDPTGTCGYPVEEQLELLDRVRKEFDVPVYVVLTKADLRDLWEEPDLEGEP 310

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            + +S+    GL+EL   +  +    +    
Sbjct: 311 VYKVSATERTGLKELRELLNDLARGHYSGRD 341


>gi|315222585|ref|ZP_07864474.1| putative ferrous iron transport protein B [Streptococcus anginosus
           F0211]
 gi|315188271|gb|EFU21997.1| putative ferrous iron transport protein B [Streptococcus anginosus
           F0211]
          Length = 673

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I +LG  N+GKS+LFN L   +   V + PG T +    +   +G   KI D  G   
Sbjct: 4   VTIALLGQPNSGKSTLFNGLTGANQ-HVGNWPGKTVEKKEGEFSYKGIDYKIVDLPGAYG 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYS 333
                E+E I R ++    ADLI ++ + +      F        NI  + I    D+  
Sbjct: 63  LSANSEEEVITREYIASGEADLIAVIVDASQLNRSLFMLSDYIGINIPVVLIMNMMDVAK 122

Query: 334 TYTEEYD 340
           +  +  D
Sbjct: 123 SQGKTID 129


>gi|316934207|ref|YP_004109189.1| GTP-binding proten HflX [Rhodopseudomonas palustris DX-1]
 gi|315601921|gb|ADU44456.1| GTP-binding proten HflX [Rhodopseudomonas palustris DX-1]
          Length = 456

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 104/270 (38%), Gaps = 36/270 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E   ++ +  ++ + S L   W   L   R          E +       + +  
Sbjct: 139 RAKTREGTLQVELAHLNYQRSRLVRSWTH-LERQRGGFGFMGGPGETQI--EADRRLIGE 195

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  L+ ++    +  +L    R       + ++G++NAGKS+LFN L + DV    D+ 
Sbjct: 196 RITKLEAELKKVQATRRLHRAGRQRVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADML 254

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G    +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 255 FATLDPTLRAIQLPHGGKAMLSDTVGFISNLPTQLVAAFRATLEEVLEADLILHVRDISH 314

Query: 311 KKEISFPKNID--------------FIFIGTKSDLYSTYTEE----------YDHLI--- 343
           +   +   ++D               + +  K D +     +           DH     
Sbjct: 315 EDAEAQQSDVDNVLRQLGVDAASGRILEVWNKIDRFEPEQRDELKNIAARRPEDHPCLLV 374

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           S+ +GEG++EL+  I+  L+     L  S+
Sbjct: 375 SAVSGEGVDELLLAIEQRLAATRTVLDLSV 404


>gi|154498371|ref|ZP_02036749.1| hypothetical protein BACCAP_02360 [Bacteroides capillosus ATCC
           29799]
 gi|150272682|gb|EDM99860.1| hypothetical protein BACCAP_02360 [Bacteroides capillosus ATCC
           29799]
          Length = 430

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 94/259 (36%), Gaps = 19/259 (7%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T+  R    +      L  L G W   L      I        + +      ++ ++
Sbjct: 121 RARTKEGRLQVELAQYKYLLPRLLGMWTH-LERQEGAIGTRGPGETQLETDRRHIRKKIS 179

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +      +    +  +   I      + I+G++NAGKS+L N L   D+    +    T
Sbjct: 180 KLEEDLEQVRRVRATQRERRIKNEVPVVAIVGYTNAGKSTLLNKLTGADI-PANNRLFDT 238

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D  T  L++     V ISDT G          E  K T  E+  ADL+L + + ++ + 
Sbjct: 239 LDTTTRTLEISDTCTVLISDTVGFISKLPHHLVEAFKATLEELSFADLLLHVIDTSNPEW 298

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGEGLEELINKI 358
                                I +  KSDLY        E    IS+ TG GL+EL+ KI
Sbjct: 299 REQAAVVEKLIVELGAAQTPRIDVFNKSDLYVGDIVPHGEDIVSISAKTGAGLDELLKKI 358

Query: 359 KSILSNKFKKLPFSIPSHK 377
              L     ++   IP  +
Sbjct: 359 GDRLDTGAHRVVLRIPYDQ 377


>gi|296863478|pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
 gi|296863479|pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
 gi|296863480|pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
 gi|296863481|pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
          Length = 271

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 73/189 (38%), Gaps = 23/189 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G+ N GK+++FNAL       V + PG T +     ++       + D  GI    
Sbjct: 6   VALVGNPNVGKTTIFNALTGL-RQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLT 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYST 334
                E I R F+   NAD+I+ + +            E+   +  + I +  K DL   
Sbjct: 65  AHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKK 124

Query: 335 YTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH---KRH 379
              + D               ++  GEG+EEL   I  +   K    P         +R 
Sbjct: 125 KGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIERE 184

Query: 380 LYHLSQTVR 388
           + H+S+ +R
Sbjct: 185 IKHISELLR 193


>gi|241204548|ref|YP_002975644.1| GTP-binding proten HflX [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858438|gb|ACS56105.1| GTP-binding proten HflX [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 441

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 31/209 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + I+ L+ ++   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 166 EADRRMLQDRIIKLERELEQVVRTRQLHRAKRRKVPHPIVALVGYTNAGKSTLFNRITGA 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 226 GV-LAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISDLPTHLVAAFRATLEEVLEADL 284

Query: 302 ILLLKEINSKKEISFPKNIDFIF----------------IGTKSDLYSTYTEE------- 338
           IL +++++     +   ++  I                 +  K D       +       
Sbjct: 285 ILHVRDMSDADNQAQSSDVMRILNDLGIDEAEAEKRLIEVWNKIDRLEPEVHDTMVQKSA 344

Query: 339 ---YDHLISSFTGEGLEELINKIKSILSN 364
                  +S+ +GEG++ L+ +I   LS 
Sbjct: 345 GASNVVAVSAVSGEGVDTLMEEISRRLSG 373


>gi|87311778|ref|ZP_01093893.1| Small GTP-binding protein domain [Blastopirellula marina DSM 3645]
 gi|87285562|gb|EAQ77481.1| Small GTP-binding protein domain [Blastopirellula marina DSM 3645]
          Length = 455

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 25/176 (14%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           K++L   L    ++ S ++ G+         +IV+ G  + GKS+L NA+  + V  V  
Sbjct: 43  KDLLRRDLRQMQEMESKLTSGR--------VEIVVFGEISTGKSALINAMVGQAVTEVDV 94

Query: 250 IPGTTRDVLTIDLDLEGY--------LVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
             G TR++  +  D  GY         V + DT GI E       E           +D+
Sbjct: 95  QGGWTREIWHVAWDGCGYRIPGLGSSEVVLIDTPGINEVGGAHRGEM---AQDAARRSDM 151

Query: 302 ILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           +L + + +      S        N   I +  K DLYS    +  H + S   +G+
Sbjct: 152 LLFVTDSDLNETEYSALVSLAAVNKPIILVLNKVDLYSPDQRKRLHEVLSQRLDGV 207


>gi|293406540|ref|ZP_06650466.1| GTPase [Escherichia coli FVEC1412]
 gi|298382279|ref|ZP_06991876.1| yeeP protein [Escherichia coli FVEC1302]
 gi|291426546|gb|EFE99578.1| GTPase [Escherichia coli FVEC1412]
 gi|298277419|gb|EFI18935.1| yeeP protein [Escherichia coli FVEC1302]
          Length = 290

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVLAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILQCGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQEQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|241760903|ref|ZP_04758992.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|260753127|ref|YP_003226020.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|241374522|gb|EER63983.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|258552490|gb|ACV75436.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 460

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 61/281 (21%), Positives = 101/281 (35%), Gaps = 38/281 (13%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E + ++ +  +  +   L   W   L   R          E +       + + + 
Sbjct: 125 AATAEGRLQVELAHLDYQAGRLVRTWTH-LERQRGGFGFLGGPGETQI--EADRRMIRDR 181

Query: 196 ILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  L+ D++       L    R       + ++G++NAGKS+LFN +   DV    D+  
Sbjct: 182 MAKLRRDLAQVTRTRGLHRARRKKAPWPVVALVGYTNAGKSTLFNRMTGADVM-AKDLLF 240

Query: 253 TTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D     + L G     +SDT G             + T  EV  ADLIL +++I  +
Sbjct: 241 ATLDPTMRQIALPGIDKAILSDTVGFVSDLPTQLVAAFRATLEEVTAADLILHVRDIAQE 300

Query: 312 KEISFPKN--------------------IDFIFIGTKSDLYSTYTEEY----------DH 341
              S  ++                    I  I    KSDL S    E             
Sbjct: 301 DSESEREDVERVLAEIGIAPVEDGGEFAIPVIEAWNKSDLLSEEAHESLAAEAARRDDVA 360

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           LIS++TGEG+E+L   +   LS   +     IP  +     
Sbjct: 361 LISAWTGEGIEDLRELVSQRLSEAHRLRHIDIPVTEGQAMA 401


>gi|217976723|ref|YP_002360870.1| GTP-binding proten HflX [Methylocella silvestris BL2]
 gi|217502099|gb|ACK49508.1| GTP-binding proten HflX [Methylocella silvestris BL2]
          Length = 469

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 109/292 (37%), Gaps = 39/292 (13%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E   ++ +  ++ + S L   W   L   R          E +   +   + +   + 
Sbjct: 142 TSEGALQVELAHLAYQKSRLVRSWTH-LERQRGGFGFLGGPGETQIETD--RRLIQERMT 198

Query: 198 FLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            ++ D+        L    R       + ++G++NAGKS+LFN +   DV    ++   T
Sbjct: 199 RIEQDLEKVKRTRGLHRKSRRDVPYPVVALVGYTNAGKSTLFNRMTHSDV-FAENMLFAT 257

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     + L  G  + +SDT G      ++     + T  EV  ADLIL +++I  +  
Sbjct: 258 LDPTLRAVSLGAGAKIILSDTVGFISDLPLMLVSAFRATLEEVLEADLILHVRDIAHEDA 317

Query: 313 --------------EISFPKNIDFIFIGTKSDLYSTYTEEY---------------DHLI 343
                          +    +   + +  K+DL      +                  ++
Sbjct: 318 DAQRTDVETILRDLGVDPDDHRRILEVWNKADLLDEAARDAARNAAKRRAGRDGAEPVIV 377

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMAS 394
           S+ TG+GL+EL  +I++ L+         + P +   L+ L +    L  ++
Sbjct: 378 SALTGQGLDELRAQIETRLAMDRLTFEIELQPENGEGLHWLYENAEVLRRSA 429


>gi|156089207|ref|XP_001612010.1| small GTP-binding protein domain containing protein [Babesia bovis]
 gi|154799264|gb|EDO08442.1| small GTP-binding protein domain containing protein [Babesia bovis]
          Length = 340

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 71/222 (31%), Gaps = 53/222 (23%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G  NAGKSSL N L    +A V+    TTR+ +   L  +   +  +D  GI E
Sbjct: 22  VRVSLVGLPNAGKSSLMNMLLNTPIAAVSPKVNTTREDIKGILCSDSCQMVFTDCPGILE 81

Query: 280 TDDIVEK--EGIKRTFLEVENADLILLLKEI----------------------------- 308
           +    +     +   +     +D+ L + +                              
Sbjct: 82  SHRRRKFCAPLVDTAWRAYRESDVCLFIIDAVKRPRAELFRVIRNLAGATPYSLDIDRTS 141

Query: 309 --------NSKKEISFPKNIDFIFIGTKSDLYST------YTEEY--------DHLISSF 346
                       E S    I    +  K DL          T E             S+ 
Sbjct: 142 DKALDDDFEDTFEASSEDRIPVALVLNKIDLVKHKKWVKCRTRELKNHGAFADIFYTSAK 201

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            G G E +I  +KS+  +     P  + +    +  + QTVR
Sbjct: 202 HGIGGEHIITFLKSMAKSGHWAYPPDMVTTMSRVQVVEQTVR 243


>gi|153217190|ref|ZP_01950954.1| GTP-binding protein HflX [Vibrio cholerae 1587]
 gi|153803483|ref|ZP_01958069.1| GTP-binding protein HflX [Vibrio cholerae MZO-3]
 gi|153827316|ref|ZP_01979983.1| GTP-binding protein HflX [Vibrio cholerae MZO-2]
 gi|153830894|ref|ZP_01983561.1| GTP-binding protein HflX [Vibrio cholerae 623-39]
 gi|229512374|ref|ZP_04401849.1| GTP-binding protein HflX [Vibrio cholerae TMA 21]
 gi|229526912|ref|ZP_04416315.1| GTP-binding protein HflX [Vibrio cholerae bv. albensis VL426]
 gi|297582276|ref|ZP_06944190.1| GTP-binding protein HflX [Vibrio cholerae RC385]
 gi|124113773|gb|EAY32593.1| GTP-binding protein HflX [Vibrio cholerae 1587]
 gi|124120984|gb|EAY39727.1| GTP-binding protein HflX [Vibrio cholerae MZO-3]
 gi|148873628|gb|EDL71763.1| GTP-binding protein HflX [Vibrio cholerae 623-39]
 gi|149738782|gb|EDM53124.1| GTP-binding protein HflX [Vibrio cholerae MZO-2]
 gi|229336081|gb|EEO01100.1| GTP-binding protein HflX [Vibrio cholerae bv. albensis VL426]
 gi|229350589|gb|EEO15534.1| GTP-binding protein HflX [Vibrio cholerae TMA 21]
 gi|297533495|gb|EFH72342.1| GTP-binding protein HflX [Vibrio cholerae RC385]
 gi|327483210|gb|AEA77617.1| GTP-binding protein HflX [Vibrio cholerae LMA3894-4]
          Length = 429

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 118/344 (34%), Gaps = 53/344 (15%)

Query: 70  PSPESFTGE----DSAE-FHVHGGIAVV-NGIL-----EELAKMPNLRLANPGEFSRRAF 118
           P P+ F GE    + AE   +HG   V+ N  L       L ++   R+ +        F
Sbjct: 52  PHPKYFVGEGKAQEIAEAVQMHGANVVIFNHALSPAQERNLERLCQCRVIDRTGLILDIF 111

Query: 119 ENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
                             + T E + ++ +  +    + L   W   L   +  I     
Sbjct: 112 AQ---------------RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGP 155

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
              + +      +E +  IL     ++    QG+          I ++G++NAGKS+LFN
Sbjct: 156 GETQLETDRRLLRERIKAILRRLEKVAKQREQGRRARSRAEIPTISLVGYTNAGKSTLFN 215

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEV 296
            + +  V    D    T D     +DL       ++DT G             K T  E 
Sbjct: 216 RITEAGV-YAADQLFATLDPTLRKIDLVDVGPAVLADTVGFIRHLPHDLVAAFKATLQET 274

Query: 297 ENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYD--- 340
           + AD++L + + + +             +EI     +  + +  K D     +   +   
Sbjct: 275 QEADILLHVVDASDERFRENIQAVETVLQEID-AHEVPTLLVMNKIDNLEEQSPRIERDD 333

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                   IS+  G G+E L   +   L+++  +    IP   +
Sbjct: 334 EGVPRVVWISAMQGAGIELLFEALSERLASQVVEHHLRIPPRHQ 377


>gi|229168439|ref|ZP_04296163.1| hypothetical protein bcere0007_33960 [Bacillus cereus AH621]
 gi|228615083|gb|EEK72184.1| hypothetical protein bcere0007_33960 [Bacillus cereus AH621]
          Length = 423

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 107/318 (33%), Gaps = 35/318 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKLTHIRSFI 172
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q    +  +    
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 173 EA----------DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
            A                + +      +  +++I      +  H  + +        +++
Sbjct: 140 LALSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKRQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 ALIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKS 329
                   + T  E   AD+IL + +      +                 I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEQTVKQLLSDLEINRIPIITLYNKK 318

Query: 330 DL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
           D     +  + +    + S+F    L  +   +++ +  +       +P  +  L  L +
Sbjct: 319 DKLHQNFIPFPKSDFLMTSAFEESDLLRIKEALETKMKEEMDDYQVELPPSEGRLLTLLK 378

Query: 386 TVRYLEMASLNEKDCGLD 403
           T   L      E     D
Sbjct: 379 TETILTKMEFLEDKFVYD 396


>gi|301155709|emb|CBW15177.1| predicted GTPase [Haemophilus parainfluenzae T3T1]
          Length = 451

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 95/259 (36%), Gaps = 29/259 (11%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           K  +  +      +    +Q +      +   I ++G++NAGKS+LFN + + +V    D
Sbjct: 193 KVRIAQLQNRLAKVEKQRNQNRQTRQKADIPTISLVGYTNAGKSTLFNFITQANV-YAAD 251

Query: 250 IPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D     L ++      ++DT G             K T  E   A L+L + + 
Sbjct: 252 QLFATLDPTLRRLQIQDIGTAILADTVGFVRQLPHDLVSAFKSTLQETVEASLLLHVIDA 311

Query: 309 NSKKEIS------------FPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFT 347
              ++I                 +  + +  K DL    T   ++          +S+ +
Sbjct: 312 ADARKIENIEAVNLVLEEIKADKVPALLVYNKIDLLENVTPHIEYDDENKPVAVYLSAHS 371

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           GEGL+ L+  IK  L N+      ++   +  + H    +  +    ++++   +  +  
Sbjct: 372 GEGLDLLLEAIKVRLKNEILSFTLTLLPQESKIRHALYQLDSIRHEQISDEGEFILNVQI 431

Query: 408 N----LRLASVS--LGKIT 420
           +    L+L      L +I 
Sbjct: 432 DKVEWLKLCKQFPKLSEII 450


>gi|282899427|ref|ZP_06307394.1| Small GTP-binding protein domain protein [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195691|gb|EFA70621.1| Small GTP-binding protein domain protein [Cylindrospermopsis
           raciborskii CS-505]
          Length = 504

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 105/258 (40%), Gaps = 38/258 (14%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEII----RNGYKIVILGHSNAGKSSLFNA 238
           D  + + + V   +  ++++++      +  EI     R   ++V+ G  +AGK+SL NA
Sbjct: 89  DAASTTLQAVRQQVAQIQDEVTRQALLSRTREIEANLARGEIQVVVFGTGSAGKTSLVNA 148

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETD-DIVEKEGIKRTFLE 295
           +  + V  V    GTT+   T  L L+G    + I+DT GI E      E+E + R    
Sbjct: 149 IMGRIVGEVNAPMGTTKVGETYCLRLKGLERKILITDTPGILEAGIPGTEREHLARAL-- 206

Query: 296 VENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
              ADL+L + + + ++    P           + +  K+DLY                E
Sbjct: 207 ATEADLLLFVVDNDLRRSEYEPLRGLAEIGKRSLLVLNKTDLY--------------KDE 252

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS---------QTVRYLEMASLNEKDC 400
             + ++ K++  + +          +       L          + V  L+  +   +  
Sbjct: 253 DKDAILIKLRERVKDYISHNDVVAIAANPQAVELEGGEIFQPEPEIVPLLKRIAAVLRAE 312

Query: 401 GLDIIAENLRLASVSLGK 418
           G D+IA+N+ L S+ LG+
Sbjct: 313 GEDLIADNILLQSLRLGE 330


>gi|42782784|ref|NP_980031.1| GTP-binding protein [Bacillus cereus ATCC 10987]
 gi|42738711|gb|AAS42639.1| GTP-binding protein [Bacillus cereus ATCC 10987]
          Length = 424

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 95/280 (33%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +   I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHTPIITLYNKK 318

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  +  IK  +  K K+ 
Sbjct: 319 DELHQNFIPFPKSDFLMTSAFEENDLLHIKEAIETKMKEE 358


>gi|323490886|ref|ZP_08096082.1| GTP-binding protein [Planococcus donghaensis MPA1U2]
 gi|323395454|gb|EGA88304.1| GTP-binding protein [Planococcus donghaensis MPA1U2]
          Length = 423

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 54/295 (18%), Positives = 115/295 (38%), Gaps = 33/295 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL-DFSEEEDVQNFSSKEVL 193
            ++T E Q ++ +  +   L  L G     L          + +    E       +++ 
Sbjct: 112 RAKTREAQVQVELAQLQYMLPRLIG-LRASLGRQGGSSSGGVANRGAGETKLELDRRKIE 170

Query: 194 NDILFLKNDISSHISQ--GKLGEIIRNGYKIV-ILGHSNAGKSSLFNALA-----KKDVA 245
             I  L  ++     Q   +  +  + G  +V ++G++NAGKS++ N L       ++  
Sbjct: 171 EQISKLHKELEHIKDQRITQRKQRTKKGMPVVSLVGYTNAGKSTVMNGLLTKTGQNEEKQ 230

Query: 246 IVT-DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           +   D+   T +     + LE      ++DT G          +  + T  E  NADL+L
Sbjct: 231 VFEKDMLFATLETSVRQIRLEDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEARNADLLL 290

Query: 304 LLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---HLISSFTG 348
            + ++++++            +    +N+  +++  KSDL        +     I++  G
Sbjct: 291 HVVDVSNEEHRYMMDVTNLTLQAVGVENVPTLYVFNKSDLAGVRYPAINGDGLWIAAKEG 350

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
            GL+EL+  IK  + + +      +P  +  +          E AS++E +   D
Sbjct: 351 VGLDELLEVIKKQIFSDYVTCRMIVPFSRGDVVAYLN-----EHASIHETEYEED 400


>gi|257468039|ref|ZP_05632135.1| ferrous iron transport protein B [Fusobacterium ulcerans ATCC
           49185]
 gi|317062325|ref|ZP_07926810.1| ferrous iron transporter B [Fusobacterium ulcerans ATCC 49185]
 gi|313688001|gb|EFS24836.1| ferrous iron transporter B [Fusobacterium ulcerans ATCC 49185]
          Length = 731

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 81/213 (38%), Gaps = 22/213 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+   G+ N GKS+L NA+A   +  V + PG T +      + +G  +K+ D  G+  
Sbjct: 2   IKLAFTGNPNVGKSALINAIAGSKLK-VGNWPGVTVEKKEAIFNYKGEEIKLVDLPGVYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---------------SKKEISFPKNIDFIF 324
                 +E I R F+  E+ D+++ + +                  K  I      D   
Sbjct: 61  LSPYTLEEKITRDFILDEDPDVVINVIDSTNLERNLYLTYLLKELEKPTIMALNFYDEFT 120

Query: 325 IGT---KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR--- 378
                   + +    E     +S+  G G+EEL++ I  + + K K   +S+P       
Sbjct: 121 KLNYKLNMEEFQQLIELKAISVSALKGTGIEELLDSIIELAAKKEKIKKYSLPFDDTITG 180

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
            +  + + +   E      K+   + ++  L  
Sbjct: 181 IIRDIEKKINSDEKFKNILKEYPSEYLSIKLME 213


>gi|228959916|ref|ZP_04121582.1| hypothetical protein bthur0005_33880 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228799768|gb|EEM46719.1| hypothetical protein bthur0005_33880 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 424

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQW-------IDKL 165
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q        + + 
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKI 222
             +             E       + + + I  +K  ++    H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIQSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      I   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKRLLSELEINHIPVITLYNKK 318

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  + +IK  +  K KK 
Sbjct: 319 DELHQNFIPFPKSDFLMTSAFEESDLLRIKEAIETKMKKE 358


>gi|332798271|ref|YP_004459770.1| ferrous iron transport protein B [Tepidanaerobacter sp. Re1]
 gi|332696006|gb|AEE90463.1| ferrous iron transport protein B [Tepidanaerobacter sp. Re1]
          Length = 671

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 21/208 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + + G+ N GK+++FNAL   +   V + PG T +     L   G    I D  G   
Sbjct: 2   FTVALAGNPNCGKTTIFNALTGANQ-HVGNWPGVTVEKKEGMLRFGGNQYNIVDLPGTYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                E E + R F+  +  DL++ + +  + +              + +      D   
Sbjct: 61  LGAYSEDEIVARDFILKDKPDLVVSVVDATNIERNLYLTVQLLEMGANVVMALNMMDEAQ 120

Query: 334 TYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
               + D              + +   +G+++L  KI   +     +      ++ R + 
Sbjct: 121 EREIKIDVDSLQRQLGVPIVPMIASRQKGIDDLKLKISEAVKKNAAEP--VKITYGRKID 178

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENL 409
               ++  +   S    D   D +A  L
Sbjct: 179 EAVASLAQIIKQSAGINDYPADWVALKL 206


>gi|284054187|ref|ZP_06384397.1| small GTP-binding protein [Arthrospira platensis str. Paraca]
          Length = 187

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   + ++G  N GKS LFNAL    V  V++ PGTT D+ T D+ +    + I DT G+
Sbjct: 3   NKPTVALVGSPNVGKSVLFNALTSHYVT-VSNYPGTTVDITTGDMIIGDKAIAIIDTPGM 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI--GTKSDLYSTY 335
                I E+E + R  L     DL++ +      + +    N+    +  G    L    
Sbjct: 62  YSLLPITEEEKVGRDLLMTRGIDLVIHVVNA---QHLGRMLNLTLQLLEAGLPVLLAVNL 118

Query: 336 TEEYDHLISSFTGEGLEE 353
            +E DHL      + L+E
Sbjct: 119 IDEADHLGIKINAKDLQE 136


>gi|269837593|ref|YP_003319821.1| GTP-binding proten HflX [Sphaerobacter thermophilus DSM 20745]
 gi|269786856|gb|ACZ38999.1| GTP-binding proten HflX [Sphaerobacter thermophilus DSM 20745]
          Length = 433

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 104/303 (34%), Gaps = 34/303 (11%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T   R    +  +   L  L   W          +        + +V    ++  + 
Sbjct: 119 RAQTHEGRLQVELAQLEYRLPRLTRMWTHLSRQAVGGVGLRGPGETQLEVDRRQARRRIA 178

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I     ++  H    +     +N   I ++G++NAGKS+L N L    V +  D    T
Sbjct: 179 LIKSQLQEVHRHRELYRNRRRRQNIPVIALVGYTNAGKSTLLNRLTDAGV-LAEDKLFAT 237

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D  T  + L  G  V ++DT G             + T  E+  A +I+ + ++   K 
Sbjct: 238 LDPTTRRVTLPSGRTVLMTDTVGFIHNLPTFLVAAFRATLEEILEASVIVHVMDVTHPKA 297

Query: 314 ISFPKNIDFIF------------IGTKSD-LYSTYTEEYD----------HLISSFTGEG 350
               + +  +                K D L    T +              IS+ TG G
Sbjct: 298 AEQAETVRTVLEDLGADSRPKVTALNKIDRLGDGLTPDQIAADLNLPPTYVPISAATGAG 357

Query: 351 LEELINKIKSILSNKFKKL--------PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           ++ L+ +++ IL+ + + +          +      H      + R+ E  +L      +
Sbjct: 358 VDLLLQRVEEILTEQQRLVPVRVVVPYSEAGLVDLFHRAGKVDSERFGEHGTLLAGHLPV 417

Query: 403 DII 405
           D++
Sbjct: 418 DLL 420


>gi|183601567|ref|ZP_02962937.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683898|ref|YP_002470281.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190934|ref|YP_002968328.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196340|ref|YP_002969895.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183219173|gb|EDT89814.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621548|gb|ACL29705.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249326|gb|ACS46266.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250894|gb|ACS47833.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295793923|gb|ADG33458.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis V9]
          Length = 331

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 85/221 (38%), Gaps = 9/221 (4%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G+ + ++G  N GKS+L NAL    +AI +  P TTR  +   L  +   + + DT 
Sbjct: 19  YRSGF-VAVVGRPNVGKSTLINALIGMQIAIASSRPETTRKAIRGVLTTDNAQIVLVDTP 77

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNIDFIFIGTKSDLY 332
           GI     ++ +         + ++D I  L   + +    +      +   F     D  
Sbjct: 78  GIHRPRTLLGQRLNDVVDESLADSDEIAFLLPADQEIGPGDRRILSRLRSQFATKNDDGT 137

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR-YLE 391
             +      +++        EL+NK+  I  N+F      +P       +L +     +E
Sbjct: 138 FKWKVPLIAIVTKIDRLNRTELVNKLIEI--NEFADFADIVPVSALGDDNLQEVRTVLIE 195

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432
                 +    D + E       ++ ++   V +E+L D +
Sbjct: 196 HLPEGPQMYPTDQVTEE--RPEDAIAELVRGVLLEELDDEL 234


>gi|84393185|ref|ZP_00991949.1| GTP-binding protein HflX [Vibrio splendidus 12B01]
 gi|84376237|gb|EAP93121.1| GTP-binding protein HflX [Vibrio splendidus 12B01]
          Length = 435

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 53/305 (17%), Positives = 107/305 (35%), Gaps = 36/305 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + + +
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRD 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   ++    Q + G   RN      I ++G++NAGKS+LFN +    V    D  
Sbjct: 170 RIKAILRRLAKVAKQREQGRRARNRAEIPTISLVGYTNAGKSTLFNQITSAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     ++L       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKIELADVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASD 288

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGE 349
            +            E      +  + +  K D         +           +S+  GE
Sbjct: 289 DRFRENIQAVHEVLEEIDAHEVPTLVVMNKIDCMEDQKPRIERDEEGAPRAVWVSAMEGE 348

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS-HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           G+E L   +   L+++  +    IP  H+  +  L   ++ ++    +E    L     +
Sbjct: 349 GIELLFEALTERLASQMVQFRLCIPHQHQGRIRSLFFEMKCIQQEEYDENGNLL----ID 404

Query: 409 LRLAS 413
           +R+  
Sbjct: 405 IRMQQ 409


>gi|218561451|ref|YP_002394364.1| hypothetical protein ECS88_4890 [Escherichia coli S88]
 gi|218368220|emb|CAR06036.1| conserved hypothetical protein with GTPase domain [Escherichia coli
           S88]
          Length = 311

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 101/248 (40%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 41  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 99

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 100 LSGHGHSMIITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 157

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K  ++        P 
Sbjct: 158 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREKTDAVFRLFRPVHPV 216

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
              S       L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 217 VAVSACTGWE-LDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 271

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 272 ----DRIF 275


>gi|254446956|ref|ZP_05060423.1| GTP-binding proten HflX [gamma proteobacterium HTCC5015]
 gi|198263095|gb|EDY87373.1| GTP-binding proten HflX [gamma proteobacterium HTCC5015]
          Length = 448

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 95/273 (34%), Gaps = 21/273 (7%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W   L   +  I        + +       + +  +      +S  
Sbjct: 138 LAQLKHIATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLIGQRIKMLEKKLKKVSRQ 196

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
             Q +          + ++G++NAGKS+LFN +   +V     +  T    L   +  + 
Sbjct: 197 REQSRSSRQKAEVPTVSLVGYTNAGKSTLFNHITNAEVFAQDQLFATLDPTLRRLVLPDK 256

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFPKNIDF--- 322
             + ++DT G             + T  E E A L+L + ++ + ++E+   +  D    
Sbjct: 257 REMVLADTVGFIRDLPHDLVAAFRSTLQETEEASLLLHVIDVADDERELRMQEVEDVLAL 316

Query: 323 --------IFIGTKSD--------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                   I +  K D         Y    E  +  +S+ TGEGLEEL+  +   L+   
Sbjct: 317 IGADSVPQIRVYNKIDQTERSPELRYGENGEVSEVYLSAHTGEGLEELMTALMDALATSQ 376

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
                 +   +  L         ++   ++E+ 
Sbjct: 377 YVAELWLEPSEGKLRAALYAQGVVDDEQVDERG 409


>gi|81300518|ref|YP_400726.1| small GTP-binding protein domain-containing protein [Synechococcus
           elongatus PCC 7942]
 gi|81169399|gb|ABB57739.1| Small GTP-binding protein domain [Synechococcus elongatus PCC 7942]
          Length = 513

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 101/238 (42%), Gaps = 22/238 (9%)

Query: 194 NDILFLKNDI--SSHISQGKL--GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
             +  + ++I   + + + +    E+ R   ++VI G  +AGK+SL NAL  + V  V  
Sbjct: 97  QQVNQIADEIAREALLERSRQIAAELERGELRVVIFGTGSAGKTSLINALLGRIVGKVEA 156

Query: 250 IPGTTRDVLTIDLDLE--GYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLK 306
             G+T +  T  L L   G  + I+DT GI E       +E + R       ADL+L + 
Sbjct: 157 TMGSTEEGQTYRLGLRGVGRDILITDTPGILEAGVAGRLREKLARQLAV--EADLLLFVV 214

Query: 307 EINSKKE-----ISFPKNIDFI-FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
           + + ++      +   +       I  K+DLY     E          +GL    + + +
Sbjct: 215 DNDLRRSELEPCLDLARIGKRSLLIFNKADLYEDRDREAILARLRERLKGLIPPSDILTA 274

Query: 361 ILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
           I S +  +LP  S    +  +  L      L+  +   +  G D+IA+N+ L S  LG
Sbjct: 275 IASPQPVRLPDGSFLQPEPEVTTL------LKRMAAVLRSEGEDLIADNILLQSQRLG 326


>gi|323952506|gb|EGB48379.1| hypothetical protein ERKG_01457 [Escherichia coli H252]
          Length = 290

 Score = 69.9 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 103/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +     I+G S AGKSSL NAL + ++  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVPGIMGKSGAGKSSLCNALFQGEITPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L+  G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LNGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+  ++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQRVLFVVMQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHR 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|282877949|ref|ZP_06286758.1| GTP-binding protein HflX [Prevotella buccalis ATCC 35310]
 gi|281299950|gb|EFA92310.1| GTP-binding protein HflX [Prevotella buccalis ATCC 35310]
          Length = 414

 Score = 69.9 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 26/229 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  I  LK  +   I + K  +    G   ++ ++G++N GKS+L N L+K +
Sbjct: 181 EMDRRIILQRITLLKQRLIE-IDKQKTTQRKNRGRLIRVALVGYTNVGKSTLMNLLSKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + +E     ++DT G          +  K T  EV  ADL+L
Sbjct: 240 V-FAENKLFATLDTTVRKVVIENLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLL 298

Query: 304 LLKEI-------------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
            + +I             N+ KE+    +   + +  K D Y  + E+    ++  T E 
Sbjct: 299 HVVDISHPDFEEQIRVVDNTLKELD-AADKPTMIVFNKIDQYR-WVEKAPDDLTPPTPEN 356

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRH-----LYHLSQTVRYLEMAS 394
           L   +  +K     K  +    I + ++         L + VR L +  
Sbjct: 357 LS--LEDLKRTWMAKLNENCVFISAKQKQNIDEFRETLYKAVRQLHVQK 403


>gi|304435905|ref|NP_036359.2| putative GTP-binding protein 6 [Homo sapiens]
 gi|308153596|sp|O43824|GTPB6_HUMAN RecName: Full=Putative GTP-binding protein 6; AltName:
           Full=Pseudoautosomal GTP-binding protein-like
          Length = 516

 Score = 69.9 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 108/298 (36%), Gaps = 32/298 (10%)

Query: 136 SSETEMQR-RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           ++ T+  R ++++  M              + H+   + +       E       + +  
Sbjct: 211 NARTKEARLQVALAEMP----LHRSNLKRDVAHLYRGVGSRYIMGSGESFMQLQQRLLRE 266

Query: 195 DILFLKNDISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV-TDI 250
               ++  +     +    +     R    I ++G++N GK++L  AL   D AI   D 
Sbjct: 267 KEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIKALTG-DAAIQPRDQ 325

Query: 251 PGTTRDVLTIDLDLEGYLVKI-SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T DV      L   +  +  DT G          E    T  +V ++DLIL +++++
Sbjct: 326 LFATLDVTAHAGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDVAHSDLILHVRDVS 385

Query: 310 SKK---------------EISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLE 352
             +               ++  P     + +  K DL   Y  TE     +S+  G GL+
Sbjct: 386 HPEAELQKCSVLSTLRGLQLPAPLLDSMVEVHNKVDLVPGYSPTEPNVVPVSALRGHGLQ 445

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           EL  ++ + +     +   ++    R     +Q     + A++ E D   +  A ++R
Sbjct: 446 ELKAELDAAVLKATGRQILTL----RVRLAGAQLSWLYKEATVQEVDVIPEDGAADVR 499


>gi|28899590|ref|NP_799195.1| putative GTPase HflX [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361397|ref|ZP_05774459.1| GTP-binding protein HflX [Vibrio parahaemolyticus K5030]
 gi|260876669|ref|ZP_05889024.1| GTP-binding protein HflX [Vibrio parahaemolyticus AN-5034]
 gi|260896638|ref|ZP_05905134.1| GTP-binding protein HflX [Vibrio parahaemolyticus Peru-466]
 gi|260900898|ref|ZP_05909293.1| GTP-binding protein HflX [Vibrio parahaemolyticus AQ4037]
 gi|28807826|dbj|BAC61079.1| GTP-binding protein HflX [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086310|gb|EFO36005.1| GTP-binding protein HflX [Vibrio parahaemolyticus Peru-466]
 gi|308093962|gb|EFO43657.1| GTP-binding protein HflX [Vibrio parahaemolyticus AN-5034]
 gi|308106524|gb|EFO44064.1| GTP-binding protein HflX [Vibrio parahaemolyticus AQ4037]
 gi|308112890|gb|EFO50430.1| GTP-binding protein HflX [Vibrio parahaemolyticus K5030]
          Length = 429

 Score = 69.9 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 95/269 (35%), Gaps = 31/269 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + +  
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRE 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   +     Q + G   RN      I ++G++NAGKS+LFN + +  V    D  
Sbjct: 170 RIKAILRRLEKVAKQREQGRRARNRAEIPTISLVGYTNAGKSTLFNRITEAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     ++L       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKMELADVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASD 288

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGE 349
           ++            E      +  + +  K D   + T   +           +S+  G 
Sbjct: 289 ERFRENIQAVHEVLEEIDAHEVPTLVVMNKIDNLESQTPRIERDEEGVPRAVWVSAMEGL 348

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKR 378
           G+E L + +   L+++  +    IP   +
Sbjct: 349 GIELLFDALTERLASQMVEHQLRIPPQYQ 377


>gi|328472284|gb|EGF43154.1| GTPase HflX [Vibrio parahaemolyticus 10329]
          Length = 429

 Score = 69.9 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 95/269 (35%), Gaps = 31/269 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + +  
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRE 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   +     Q + G   RN      I ++G++NAGKS+LFN + +  V    D  
Sbjct: 170 RIKAILRRLEKVAKQREQGRRARNRAEIPTISLVGYTNAGKSTLFNRITEAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     ++L       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKMELADVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASD 288

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGE 349
           ++            E      +  + +  K D   + T   +           +S+  G 
Sbjct: 289 ERFRENIQAVHEVLEEIDAHEVPTLVVMNKIDNLESQTPRIERDEEGVPRAVWVSAMEGL 348

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKR 378
           G+E L + +   L+++  +    IP   +
Sbjct: 349 GIELLFDALTERLASQMVEHQLRIPPQYQ 377


>gi|323971898|gb|EGB67122.1| hypothetical protein ERHG_02102 [Escherichia coli TA007]
          Length = 290

 Score = 69.9 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVYAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELCTESVRGQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|229526988|ref|ZP_04416384.1| GTP-binding protein HflX [Vibrio cholerae 12129(1)]
 gi|229335511|gb|EEO00992.1| GTP-binding protein HflX [Vibrio cholerae 12129(1)]
          Length = 429

 Score = 69.9 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 118/344 (34%), Gaps = 53/344 (15%)

Query: 70  PSPESFTGE----DSAE-FHVHGGIAVV-NGIL-----EELAKMPNLRLANPGEFSRRAF 118
           P P+ F GE    + AE   +HG   V+ N  L       L ++   R+ +        F
Sbjct: 52  PHPKYFVGEGKAQEIAEAVQMHGANVVIFNHALSPAQERNLERLCQCRVIDRTGLILDIF 111

Query: 119 ENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
                             + T E + ++ +  +    + L   W   L   +  I     
Sbjct: 112 AQ---------------RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGP 155

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
              + +      +E +  IL     ++    QG+          I ++G++NAGKS+LFN
Sbjct: 156 GETQLETDRRLLRERIKAILRRLEKVAKQREQGRRARSRAEIPTISLVGYTNAGKSTLFN 215

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEV 296
            + +  V    D    T D     +DL       ++DT G             K T  E 
Sbjct: 216 RITEAGV-YAADQLFATLDPTLRKIDLVDVGPAVLADTVGFIRHLPHDLVAAFKATLQET 274

Query: 297 ENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYD--- 340
           + AD++L + + + +             +EI     +  + +  K D     +   +   
Sbjct: 275 QEADILLHVVDASDERFRENIQAVETVLQEID-AHEVPTLLVMNKIDNLEEQSPRIERDD 333

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                   +S+  G G+E L   +   L+++  +    IP   +
Sbjct: 334 EGVPRVVWLSAMQGAGIELLFEALSERLASQVVEHHLRIPPRHQ 377


>gi|227535923|ref|ZP_03965972.1| GTP-binding protein HflX [Sphingobacterium spiritivorum ATCC 33300]
 gi|227244166|gb|EEI94181.1| GTP-binding protein HflX [Sphingobacterium spiritivorum ATCC 33300]
          Length = 402

 Score = 69.9 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 14/165 (8%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALA 240
           E       + +LN I   K  + S   Q +     R    ++ ++G++N GKS++ N ++
Sbjct: 165 ESQIESDRRMILNKISLFKERLKSIDKQNETQRKNRGEMIRVALVGYTNVGKSTIMNMIS 224

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K DV I  +    T D     + ++     +SDT G          E  K T  EV  AD
Sbjct: 225 KSDVLI-ENKLFATLDTTVRKVVIDNLPFLLSDTVGFIRKLPHHLVECFKSTLDEVREAD 283

Query: 301 LILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYS 333
           +++ + +I+                     +   I +  K D Y 
Sbjct: 284 VLIHVVDISHPNFEDHIHAVNETLKDLGALDKPVITVFNKIDAYK 328


>gi|28493251|ref|NP_787412.1| GTP-binding protein Era [Tropheryma whipplei str. Twist]
 gi|28572637|ref|NP_789417.1| GTP-binding protein Era [Tropheryma whipplei TW08/27]
 gi|81723839|sp|Q83MZ2|ERA_TROWT RecName: Full=GTPase Era
 gi|81723852|sp|Q83NI3|ERA_TROW8 RecName: Full=GTPase Era
 gi|28410769|emb|CAD67155.1| GTP-binding protein [Tropheryma whipplei TW08/27]
 gi|28476292|gb|AAO44381.1| GTP-binding protein Era-like protein [Tropheryma whipplei str.
           Twist]
          Length = 301

 Score = 69.9 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R+G  I ++G  N GKS+L N+L  + ++I +D P TTR ++   +      + I+DT 
Sbjct: 10  YRSGI-ITLVGRPNVGKSTLINSLVGEHLSITSDKPQTTRRIIRGVISRMNAQIAITDTP 68

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           GI +      K   + T   +  +D I +   +N K
Sbjct: 69  GIHKPKTPFGKGLNEMTTCALSASDSIGICLPVNQK 104


>gi|193071490|ref|ZP_03052402.1| putative GTPase [Escherichia coli E110019]
 gi|192955212|gb|EDV85703.1| putative GTPase [Escherichia coli E110019]
          Length = 290

 Score = 69.9 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ +   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMIITDLPGVGESRNRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|330444282|ref|YP_004377268.1| GTP binding protein [Chlamydophila pecorum E58]
 gi|328807392|gb|AEB41565.1| GTP binding protein [Chlamydophila pecorum E58]
          Length = 421

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 75/219 (34%), Gaps = 23/219 (10%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQ--GKLGEIIRNGY-KIVILGHSNAGKSSLF 236
           E E       + V   I  L   I     Q  G+    +R+G     ++G++N+GKSSL 
Sbjct: 150 EGEKQIELDRRMVQEKIHKLSAQIREIEKQREGRRKAKVRSGIPTFALIGYTNSGKSSLL 209

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N L   D      +  T        +   G  V ++DT G             K T    
Sbjct: 210 NVLTAADTYTEDKLFATLDPKTRTSVLPGGRRVLVTDTVGFIRKLPHTLVAAFKSTLEAA 269

Query: 297 ENADLILLLKEIN---SKKEIS---------FPKNIDFIFIGTKSDLYS--------TYT 336
            + D++L + + +   +++ I            ++   I +  K D              
Sbjct: 270 LHEDVLLHVVDASHPLAEEHIQTTFALLKELHIEHPKMITVLNKVDALPDRCVSGKLRLL 329

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                L+S+ TGEG+  L+  +  I+     +     P 
Sbjct: 330 SPRTVLVSAKTGEGIPHLLEAMARIIQEGCCEALLHFPY 368


>gi|315641408|ref|ZP_07896482.1| GTP-binding protein HflX [Enterococcus italicus DSM 15952]
 gi|315482844|gb|EFU73366.1| GTP-binding protein HflX [Enterococcus italicus DSM 15952]
          Length = 407

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 83/207 (40%), Gaps = 18/207 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             ++ +  I      +++H  + +     +   +I ++G++NAGKS++ N L   D    
Sbjct: 164 HIRDRIAKIKRELKQVAAHRERTRSRRKQQATVQIGLIGYTNAGKSTVLNRLTAADTYEQ 223

Query: 248 TDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +   T D LT    L EG  V ++DT G  +       +    T  E ++ D++L + 
Sbjct: 224 DQLFA-TLDPLTKKWRLTEGLTVTLTDTVGFIQELPTQLVDAFHSTLEESKDMDILLHVV 282

Query: 307 EINSKKEISFP------------KNIDFIFIGTKSDLYS----TYTEEYDHLISSFTGEG 350
           + +S                   +NI  + I  K+D         T   + ++S+   +G
Sbjct: 283 DASSPDRTQHEATVLQLMKELELENIPTLTIYNKADKLEDDQFVPTLFPNVVVSAKNFQG 342

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHK 377
            E L   +K  L   ++     +P+ +
Sbjct: 343 KEVLSQAVKRFLMTIWEPYECWLPAEQ 369


>gi|154500768|ref|ZP_02038806.1| hypothetical protein BACCAP_04446 [Bacteroides capillosus ATCC
           29799]
 gi|150270657|gb|EDM97966.1| hypothetical protein BACCAP_04446 [Bacteroides capillosus ATCC
           29799]
          Length = 810

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 19/181 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ ++G+ N GK++LFNAL   +   V + PG T +       ++G  V + D  GI  
Sbjct: 136 MKLALVGNPNCGKTTLFNALTGSNQ-YVGNWPGVTVEKKEGRAQVDGKDVTVVDLPGIYS 194

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                 +E + R F+  E+ D I+ + +  + +                +      D   
Sbjct: 195 LSPYSMEEIVARDFIVGEHPDAIIDIIDATNIERNLYLTAQLLELERPMVIALNFMDEAR 254

Query: 334 TYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            + ++ D              I++ TGE ++EL+      +       P  +     HL 
Sbjct: 255 RHGDKIDCQRLSELLGVPVIPITARTGENIQELLRVAHQQMHVGVTLEPDDLYDDYTHLI 314

Query: 382 H 382
           H
Sbjct: 315 H 315


>gi|291547868|emb|CBL20976.1| iron-only hydrogenase maturation protein HydF [Ruminococcus sp.
           SR1/5]
          Length = 433

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 44/188 (23%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           +   I   G  NAGKSS+ N +  +++A+V+D+ GTT D ++  ++ L    V I DT G
Sbjct: 10  DRVHIGFFGRRNAGKSSIVNKVTGQELAVVSDVKGTTTDPVSKAMELLPMGPVVIIDTPG 69

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILL-----LKEINSKKEISF---PKNIDFIFIGTK 328
           I +   + E   +++    +   D+ +L     + + +  +E+      K I ++ +  K
Sbjct: 70  IDDEGHLGELR-VRKAKQVLNRVDVAVLVVDATVGKTSVDEELIHIFKEKEIPYLVVYNK 128

Query: 329 SDLY-------------------------STYTEEYDH---------LISSFTGEGLEEL 354
           +DL                          S+ +++ DH           S+ TG+ + EL
Sbjct: 129 ADLLKTKDGNRLSSDNNLNRNTHAGAVKESSVSQKQDHENQNTEQSIYASAATGQNIYEL 188

Query: 355 INKIKSIL 362
             KI S+ 
Sbjct: 189 KEKIASLA 196


>gi|311695389|gb|ADP98262.1| small GTP-binding protein [marine bacterium HP15]
          Length = 432

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 108/314 (34%), Gaps = 47/314 (14%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +E + 
Sbjct: 114 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRERIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +    +QG+      +   + ++G++NAGKS+LFN +    V    D    T
Sbjct: 173 SIHKRLEKVRRQRNQGRRARQRADIPTVSLVGYTNAGKSTLFNRITTSSV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L+L     V ++DT G          E  + T  E   A L+L + + +  + 
Sbjct: 232 LDPTLRRLELPDVGPVVMADTVGFIRHLPHKLVEAFRATLEETTQATLLLHIIDSHDPRR 291

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLE 352
               +            +I  + +  K DL   +T   +           +S+ TGEGL+
Sbjct: 292 EENIEQVEEVLAEIGADDIPMLQVFNKIDLLENFTPRVERNEEGIPVRAWVSAVTGEGLD 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            L + I   ++               H   L      L  A L+E      +I+E  R  
Sbjct: 352 GLFDAIVERVAEDVVH----------HFVLLGPADGKL-RALLHEAGS---VISEEYRD- 396

Query: 413 SVSLGKITGCVDVE 426
                  TG   VE
Sbjct: 397 -------TGDTVVE 403


>gi|229519943|ref|ZP_04409374.1| GTP-binding protein HflX [Vibrio cholerae TM 11079-80]
 gi|229343071|gb|EEO08058.1| GTP-binding protein HflX [Vibrio cholerae TM 11079-80]
          Length = 429

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 118/344 (34%), Gaps = 53/344 (15%)

Query: 70  PSPESFTGE----DSAE-FHVHGGIAVV-NGIL-----EELAKMPNLRLANPGEFSRRAF 118
           P P+ F GE    + AE   +HG   V+ N  L       L ++   R+ +        F
Sbjct: 52  PHPKYFVGEGKAQEIAEAVQMHGANVVIFNHALSPAQERNLERLCQCRVIDRTGLILDIF 111

Query: 119 ENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
                             + T E + ++ +  +    + L   W   L   +  I     
Sbjct: 112 AQ---------------RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGP 155

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
              + +      +E +  IL     ++    QG+          I ++G++NAGKS+LFN
Sbjct: 156 GETQLETDRRLLRERIKAILRRLEKVAKQREQGRRARSRAEIPTISLVGYTNAGKSTLFN 215

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEV 296
            + +  V    D    T D     +DL       ++DT G             K T  E 
Sbjct: 216 RITEAGV-YAADQLFATLDPTLRKIDLVDVGPAVLADTVGFIRHLPHDLVAAFKATLQET 274

Query: 297 ENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYD--- 340
           + AD++L + + + +             +EI     +  + +  K D     +   +   
Sbjct: 275 QEADILLHVVDASDERFRENIQAVETVLQEID-AHEVPTLLVMNKIDNLEEQSPRIERDD 333

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                   IS+  G G+E L   +   L+++  +    IP   +
Sbjct: 334 EGVPRVVWISAMQGAGIELLFEALSERLASQVVEHHLRIPPRHQ 377


>gi|254173722|ref|ZP_04880394.1| ferrous iron transport protein B [Thermococcus sp. AM4]
 gi|214032414|gb|EEB73244.1| ferrous iron transport protein B [Thermococcus sp. AM4]
          Length = 660

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 71/189 (37%), Gaps = 23/189 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G+ N GK+++FNAL       V + PG T +      + +G    + D  G     
Sbjct: 4   VALAGNPNVGKTTIFNALTG-MRQHVGNWPGVTVEKKEGVFEYKGERFLVVDLPGTYSLT 62

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYST 334
                E + R FL   N D+++ + +  S         EI      + I    K DL   
Sbjct: 63  AHSVDELVARNFLLNGNPDVVVNVVDATSILRNLYLTMEIFEMGLKNVIIALNKLDLAEK 122

Query: 335 YTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH---KRH 379
              + D              +S+  G G+EEL  KI  +   K K  P         +R 
Sbjct: 123 KGIKIDPVKMSKALGVPVIPLSAKEGAGIEELKEKIWEMAHGKIKTNPVLPRYDEAVERE 182

Query: 380 LYHLSQTVR 388
           + H+S+ + 
Sbjct: 183 IEHISKCLE 191


>gi|253583507|ref|ZP_04860705.1| ferrous iron transporter B [Fusobacterium varium ATCC 27725]
 gi|251834079|gb|EES62642.1| ferrous iron transporter B [Fusobacterium varium ATCC 27725]
          Length = 731

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 22/211 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+   G+ N GKS+L NA+A   +  V + PG T +      + +G  +K+ D  G+  
Sbjct: 2   IKLAFTGNPNVGKSALINAIAGSKLK-VGNWPGVTVEKKEAIFNYKGEEIKLVDLPGVYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---------------SKKEISFPKNIDFIF 324
                 +E I R F+  E+ D+++ + +                  K  I      D   
Sbjct: 61  LSPYTLEEKITRDFILDESPDVVVNVIDSTNLERNLYLTYLLKELEKPTIMALNFYDEFT 120

Query: 325 IGT-KSDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH---KR 378
               K +L  +    E     +S+  G G+EEL++ I  + + K K   +S+P       
Sbjct: 121 KLNYKLNLEEFQELIELKAIPVSALKGTGIEELLDSIIELAAKKEKAKKYSLPFDDSITG 180

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            + +L + +   +      K+   + +A  L
Sbjct: 181 VIRNLEKKIISDKNFKNILKEYPSEYLAIKL 211


>gi|229111176|ref|ZP_04240732.1| hypothetical protein bcere0018_34230 [Bacillus cereus Rock1-15]
 gi|228672273|gb|EEL27561.1| hypothetical protein bcere0018_34230 [Bacillus cereus Rock1-15]
          Length = 424

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 98/280 (35%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++++      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLNARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      I   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADSNYIGHEKTVKRLLSELEINHIPIITLYNKK 318

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  + +IK  +  K KK 
Sbjct: 319 DELHQNFIPFPKSDFLMTSAFEESDLLRIKEAIETKMKKE 358


>gi|306836304|ref|ZP_07469285.1| GTP-binding protein HflX [Corynebacterium accolens ATCC 49726]
 gi|304567824|gb|EFM43408.1| GTP-binding protein HflX [Corynebacterium accolens ATCC 49726]
          Length = 502

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 30/219 (13%)

Query: 188 SSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV 244
             + +  ++  L+ ++       + K      +   +I I G++NAGKSSL NA+    V
Sbjct: 239 DRRRIRTEMAHLRKELRGMKTAREVKRSRRQSSTIAQIAIAGYTNAGKSSLINAMTNAGV 298

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D  T    L +G  V  +DT G          E  K T  EV  AD++L
Sbjct: 299 -LVEDALFATLDPTTRRASLADGRQVVFTDTVGFVRHLPTQLVEAFKSTLEEVLAADIML 357

Query: 304 LLKEINSK---KEISFPKN-------------IDFIFIGTKSD---------LYSTYTEE 338
            + + +     K+I                     I +  K D         L      E
Sbjct: 358 HVVDGSDPFPLKQIEAVNKVIYDIVSETGEQAPPEIIVINKIDQADPLVLAELRHVLDHE 417

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
               +S+ TGEG++EL  +++  L+++   +   +P  +
Sbjct: 418 DVVYVSARTGEGIDELSARVELFLNSRDSHVKLQVPFTR 456


>gi|295690017|ref|YP_003593710.1| GTP-binding protein Era [Caulobacter segnis ATCC 21756]
 gi|295431920|gb|ADG11092.1| GTP-binding protein Era [Caulobacter segnis ATCC 21756]
          Length = 316

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 73/201 (36%), Gaps = 35/201 (17%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G  NAGKS+L N +    V+IVT    TTR  +          + + DT GI     
Sbjct: 14  AIIGAPNAGKSTLVNRMVGAKVSIVTQKVQTTRFPVRGVAIAGDTQIVLVDTPGIFSPRR 73

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKK----------------------EISFPKNI 320
            +++  ++  +   E A+  + L ++ ++                       E     + 
Sbjct: 74  RLDRAMVRAAWAGSEEAEATVHLVDVQAELASRADKATPGEYRSAQDVQTIIEGLKAADR 133

Query: 321 DFIFIGTKSD------LYSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFK 367
             I    K D      L +   + +D        +IS+ TG G+++L  K+ +++     
Sbjct: 134 KVILALNKIDGIKRDTLLAIAKDFFDTGVYTDVFMISAQTGAGVDDLTAKLVTMMPEGPW 193

Query: 368 KLPFSIPSHKRHLYHLSQTVR 388
             P    +        ++  R
Sbjct: 194 LYPEDQTADLPARLLAAEITR 214


>gi|172035490|ref|YP_001801991.1| GTP-binding protein, HSR1-related [Cyanothece sp. ATCC 51142]
 gi|57864828|gb|AAW57003.1| iron(II)transporter [Cyanothece sp. ATCC 51142]
 gi|171696944|gb|ACB49925.1| GTP-binding protein, HSR1-related [Cyanothece sp. ATCC 51142]
          Length = 208

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 2/100 (2%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           QGK  E++  G  I ++G  N GKS LFN L       V++ PGTT +     + + G  
Sbjct: 30  QGKSPEVVSQG-TIALVGSPNVGKSLLFNVLTGA-YTTVSNYPGTTVEASRNYITIAGKT 87

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           + I DT G+     + E+E   R  L  E+ DL + + + 
Sbjct: 88  ITIIDTPGMYSLIPMTEEERFSRELLFKESLDLAVHVIDA 127


>gi|315606386|ref|ZP_07881401.1| GTP-binding protein HflX [Prevotella buccae ATCC 33574]
 gi|315251792|gb|EFU31766.1| GTP-binding protein HflX [Prevotella buccae ATCC 33574]
          Length = 416

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 81/196 (41%), Gaps = 17/196 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  +  LK  +   I + K+ +    G   ++ ++G++N GKS++ N LAK +
Sbjct: 181 EMDRRIILQRMSLLKQRLVE-IDRQKVTQRKNRGRMIRVALVGYTNVGKSTIMNLLAKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     ++DT G          +  K T  EV  ADL++
Sbjct: 240 V-FAENKLFATLDTTVRKVVVDNLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLI 298

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYS-TYTEEYDHLISSFTGEG 350
            + +I+    +++I   +N            + +  K D Y+    EE D   ++     
Sbjct: 299 HVVDISHPDFEEQIKVVENTLGELGCADKPSMIVFNKIDNYTWVEKEEDDLTPATKENIT 358

Query: 351 LEELINKIKSILSNKF 366
           L+EL     + L+   
Sbjct: 359 LDELKRTWMARLNENC 374


>gi|153815053|ref|ZP_01967721.1| hypothetical protein RUMTOR_01270 [Ruminococcus torques ATCC 27756]
 gi|145847621|gb|EDK24539.1| hypothetical protein RUMTOR_01270 [Ruminococcus torques ATCC 27756]
          Length = 413

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 108/282 (38%), Gaps = 31/282 (10%)

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           A  +S E ++Q  L+        +S        L+ +   I       ++ ++     +E
Sbjct: 114 ARAVSGEGKIQVELAQLRYR---ASRLAGLGRSLSRLGGGIGTRGPGEKKLEMDRRLIRE 170

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAK----KDVAI 246
            ++ +     D+  H    +  +  ++G K+  ++G+++AGKSS+ NAL      +D  +
Sbjct: 171 RISRLKKELKDVEKHRELIRT-QRKQSGLKVAALVGYTSAGKSSIENALTNAGILEDAML 229

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
            + +  TTR ++          + ++DT G          E  K T  E + AD+I+ + 
Sbjct: 230 FSTLDTTTRSLVL----DNTQEILVTDTVGFIRKLPHHLVEAFKSTLEEAKYADIIIHVV 285

Query: 307 EINSKKEISF------------PKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTG 348
           + ++ +                  +   I +  K D       Y  +  EY    S+ TG
Sbjct: 286 DASNPQMDEQMHVVYDTLRQLGAADRPVITLFNKQDKLESAGSYRDFQAEYSIPASAKTG 345

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
           EGL EL   +  I+  +   +       +     L ++   L
Sbjct: 346 EGLAELKKALLEIVRREQIYVERLYDFSEASKIQLIRSRGQL 387


>gi|21672897|ref|NP_660962.1| ferrous iron transport protein B [Chlorobium tepidum TLS]
 gi|21645951|gb|AAM71304.1| ferrous iron transport protein B [Chlorobium tepidum TLS]
          Length = 712

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 25/215 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + + G+ NAGKSSLFNAL       V + PG T +     LD +GY + + D  G   
Sbjct: 7   ITVALAGNPNAGKSSLFNALTGAHQ-RVGNFPGVTIEKHEGYLDYKGYRITVVDLPGTYS 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------------EISFPKNIDFIF- 324
                 +E + R F+  E  D+++ + E  + +              ++    N+     
Sbjct: 66  LTPYSPEEIVTRRFIIDEKPDVVVNVVEGTNLERNLMLTVQLMEMEVDLLVALNMMDEVE 125

Query: 325 ---IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
              I    D        +   IS+   +GL+EL++ I S+   + +     I        
Sbjct: 126 EKGISIDLDQLEQLFGSHIVPISARNRKGLDELLDHIVSVSEGRIEIKKNKITFS----A 181

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416
            + + +  + +   +E++  LD  A +  LA   L
Sbjct: 182 EVEKAIDKIALLLAHERE--LDAAANHRWLAIKLL 214


>gi|237736602|ref|ZP_04567083.1| ferrous iron transporter B [Fusobacterium mortiferum ATCC 9817]
 gi|229420464|gb|EEO35511.1| ferrous iron transporter B [Fusobacterium mortiferum ATCC 9817]
          Length = 732

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 23/211 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++   G+ N GKS+L NA+A   +  V + PG T +        +G  +++ D  G+  
Sbjct: 2   IRLAFTGNPNVGKSALINAIAGSKLK-VGNWPGVTVEKKEATFTYKGEEIELVDLPGVYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIF----- 324
                 +E I R F+  EN D+++ + +  +           KE+  P  +         
Sbjct: 61  LSPYSLEEKITRDFILEENPDVVINVVDSTNLERNLYLTFLIKELEKPTIMALNLYDEFD 120

Query: 325 -IGTKSDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            +  K D+  +  + E     +S+  G G+ EL+++    L+   KK  FS P  +    
Sbjct: 121 KLKYKLDIKEFENFMEMKAIPVSALKGTGITELMDRALE-LAKGNKKEKFSFPFDEGTST 179

Query: 382 HLSQTVRYLEMASLNEKDC---GLDIIAENL 409
            +   V+ +E     E+       + +A  L
Sbjct: 180 LIKDIVKTIESDKNYEEALKVYSSEFLAIKL 210


>gi|182678502|ref|YP_001832648.1| GTP-binding proten HflX [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182634385|gb|ACB95159.1| GTP-binding proten HflX [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 466

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 85/221 (38%), Gaps = 34/221 (15%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   +  L+ D++       L    R       I ++G++NAGKS+LFN L + 
Sbjct: 189 EADRRLLQERMTRLEQDLAGVKRTRGLHRKTRRDVPYPIIALVGYTNAGKSTLFNRLTEA 248

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV +  ++   T D     L L  G  V +SDT G       +     + T  EV  ADL
Sbjct: 249 DV-LAQNMLFATLDPTLRSLTLPHGAKVILSDTVGFISDLPTMLVSAFRATLEEVLEADL 307

Query: 302 ILLLKEIN---------------SKKEISFPKNIDFIFIGTKSDLYS------------- 333
           IL +++I                ++  I        + +  K+DL               
Sbjct: 308 ILHVRDIAHQDAEAQCQDVESVLAELGIDMADEQRILEVWNKADLLDEEAQAAALNNARR 367

Query: 334 -TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               E    L+S+ TG+G+  L  +I++ L+        ++
Sbjct: 368 WKNAENQPILVSALTGQGVATLEAEIEARLARGRLLFDITL 408


>gi|288926220|ref|ZP_06420146.1| GTP-binding protein HflX [Prevotella buccae D17]
 gi|288336999|gb|EFC75359.1| GTP-binding protein HflX [Prevotella buccae D17]
          Length = 416

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 81/196 (41%), Gaps = 17/196 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  +  LK  +   I + K+ +    G   ++ ++G++N GKS++ N LAK +
Sbjct: 181 EMDRRIILQRMSLLKQRLVE-IDRQKVTQRKNRGRMIRVALVGYTNVGKSTIMNLLAKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     ++DT G          +  K T  EV  ADL++
Sbjct: 240 V-FAENKLFATLDTTVRKVVVDNLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLI 298

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYS-TYTEEYDHLISSFTGEG 350
            + +I+    +++I   +N            + +  K D Y+    EE D   ++     
Sbjct: 299 HVVDISHPDFEEQIKVVENTLGELGCADKPSMIVFNKIDNYTWVEKEEDDLTPATKENIT 358

Query: 351 LEELINKIKSILSNKF 366
           L+EL     + L+   
Sbjct: 359 LDELKRTWMARLNENC 374


>gi|15965218|ref|NP_385571.1| putative GTP-binding protein [Sinorhizobium meliloti 1021]
 gi|307309233|ref|ZP_07588904.1| GTP-binding proten HflX [Sinorhizobium meliloti BL225C]
 gi|15074398|emb|CAC46044.1| Putative GTP-binding protein [Sinorhizobium meliloti 1021]
 gi|306900379|gb|EFN30995.1| GTP-binding proten HflX [Sinorhizobium meliloti BL225C]
          Length = 465

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 35/213 (16%)

Query: 202 DISSHISQGKLGEIIRNGYK-------IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +   + Q +    +    +       + ++G++NAGKS+LFN +    V +  D+   T
Sbjct: 204 KLERELEQVRRTRQLHRSKRKKVPHPIVALVGYTNAGKSTLFNRMTGAGV-LAEDMLFAT 262

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L  G +V +SDT G             + T  EV  ADL+L +++++    
Sbjct: 263 LDPTLRRLKLPHGRMVILSDTVGFISDLPTHLVAAFRATLEEVLEADLVLHVRDLSDPDN 322

Query: 314 ISFPKN----------------IDFIFIGTKSDLYSTYTEEY----------DHLISSFT 347
            +   +                   + +  K D       E              +S+ T
Sbjct: 323 QAQASDVLRILADLGIDEKEGAERIVEVWNKIDKVEPEVREALVKKAASADNTVAVSAMT 382

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           GEG+++L+ +I   LS    +    +   +  L
Sbjct: 383 GEGVDDLLTEIGRRLSGVMTECTVVLGLDQLQL 415


>gi|119718057|ref|YP_925022.1| GTP-binding protein, HSR1-related [Nocardioides sp. JS614]
 gi|119538718|gb|ABL83335.1| GTP-binding protein HflX [Nocardioides sp. JS614]
          Length = 493

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 117/346 (33%), Gaps = 48/346 (13%)

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG-KIDLLEA 128
           P P ++ G         G +  +  I++       +          R  E+  K+ +++ 
Sbjct: 122 PDPATYIG--------RGKVDGLREIVQATGADTVICDGELAPSQLRNLEDRLKVKVVDR 173

Query: 129 ESLADLISSET----EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184
            +L   I ++     E Q ++ +  ++  L      W   L+       A          
Sbjct: 174 TALILDIFAQHAKSKEGQAQVELAQLN-YLKQRLRGWGGNLSRQVGGRAAGGVGIGGRGP 232

Query: 185 QNFSSKEVLNDILFLKNDISSHISQ------GKLGEIIRNGY-KIVILGHSNAGKSSLFN 237
                +     I      +   + +       K  E  R+    + I G++NAGKSSL N
Sbjct: 233 GETKIETDRRRINTKIAKLRRELKEMKGTRDTKRQERRRHHIPSVSIAGYTNAGKSSLLN 292

Query: 238 ALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
            L       + A+   +  TTR   T     +G +  +SDT G          E  + T 
Sbjct: 293 RLTDAGVLVEDALFATLDPTTRRTTTA----DGRVYTMSDTVGFVRHLPHQLVEAFRSTL 348

Query: 294 LEVENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTY------ 335
            EV +ADLIL + + +                      +  + +  K+D           
Sbjct: 349 EEVADADLILHVVDGSHPDPEGQLTAVREVFAEIGASQVPELVVINKADAADPMVIARLR 408

Query: 336 -TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
             E +  ++S+ TGEG+ E +  I+  L     +    +P  +  L
Sbjct: 409 QREPHSVVVSAKTGEGVAEALRVIEGELPRPGVEFKALLPYERGDL 454


>gi|241758547|ref|ZP_04756664.1| GTP-binding protein Era [Neisseria flavescens SK114]
 gi|241321290|gb|EER57450.1| GTP-binding protein Era [Neisseria flavescens SK114]
          Length = 309

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 43/220 (19%)

Query: 202 DISSHI-SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           DI + + ++ +     R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T 
Sbjct: 2   DIETFLQNESQHPTDYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTG 60

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----------------ENADLILL 304
               +       DT G +        + + +   E                  +AD ++L
Sbjct: 61  IYTDDTAQFVFVDTPGFQTNHRNALNDRLNQNVTEALSGVDVVVFVVEAMRFTDADRVVL 120

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSD------------LYSTYTEEYDHL----ISSFTG 348
                       PK+   + +  K D              +   +E++      +S+  G
Sbjct: 121 ---------KQLPKHTPVVLVVNKIDKDKAKDKFALEAFINEVRQEFEFTASEAVSAKHG 171

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             +  L+  +K  L       P  + + K   +   + VR
Sbjct: 172 LRIANLLELLKPYLPENIPMYPEDMVTDKSSRFLAMEIVR 211


>gi|229031329|ref|ZP_04187334.1| hypothetical protein bcere0028_33820 [Bacillus cereus AH1271]
 gi|228729984|gb|EEL80959.1| hypothetical protein bcere0028_33820 [Bacillus cereus AH1271]
          Length = 424

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 96/280 (34%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLAELEINHIPIITLYNKK 318

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  +  IK  +  K K+ 
Sbjct: 319 DELHQNFIPFPKSDFLMTSAFEENDLLHIKEAIETKMKEE 358


>gi|119502793|ref|ZP_01624878.1| probable GTP-binding protein [marine gamma proteobacterium
           HTCC2080]
 gi|119461139|gb|EAW42229.1| probable GTP-binding protein [marine gamma proteobacterium
           HTCC2080]
          Length = 405

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 97/270 (35%), Gaps = 24/270 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 102 RARTHEGKLQVELAQLQHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRIS 160

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + +  +Q +          + I+G++NAGKS+LFN  A  DV    D    T
Sbjct: 161 AIETRLGKVKAQRAQSRRARKRAELPLVSIVGYTNAGKSTLFNRYASADV-YAADQLFAT 219

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     +++     V ++DT G          +  K T  E  NADL++ + ++++ + 
Sbjct: 220 LDPTLRRVEIPHLGDVVLADTVGFISDLPHTLIDAFKATLEETLNADLLIHVIDVSADQR 279

Query: 314 ISFPKNIDFIF------------IGTKSDLYSTYTE--------EYDHLISSFTGEGLEE 353
             +   +D +             +  K DL                   +S+ TGEGL  
Sbjct: 280 EYWMSEVDLVLSEIGAGDVPMLCVFNKLDLLEQQPRIVRNEEGLPTAVYLSARTGEGLPL 339

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           L   ++  L ++  +    +   +  L   
Sbjct: 340 LEEALRERLQDEVFEGEVELTPSQGKLRAA 369


>gi|323491083|ref|ZP_08096274.1| GTPase HflX [Vibrio brasiliensis LMG 20546]
 gi|323314663|gb|EGA67736.1| GTPase HflX [Vibrio brasiliensis LMG 20546]
          Length = 429

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 91/269 (33%), Gaps = 31/269 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + +  
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRV 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   +     Q + G   RN      + ++G++NAGKS+LFN +    V    D  
Sbjct: 170 RIKTILRRLEKVAKQREQGRRARNRAEIPTVSLVGYTNAGKSTLFNRITAAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     ++L       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKIELNDVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASD 288

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGE 349
            +            E      +  + +  K D         +           +S+  G 
Sbjct: 289 DRFRENIQAVHEVLEEIDAHEVPSLLVMNKIDNLEDQKPRIERDEEGVPRAVWVSAMEGI 348

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKR 378
           G E L   +K  L+++  +    IP  ++
Sbjct: 349 GTELLFEALKERLASQMVEYQLRIPPQQQ 377


>gi|322391618|ref|ZP_08065087.1| GTP-binding protein HflX [Streptococcus peroris ATCC 700780]
 gi|321145701|gb|EFX41093.1| GTP-binding protein HflX [Streptococcus peroris ATCC 700780]
          Length = 412

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 99/266 (37%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNTLTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + ++      
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEE-----LINKI 358
            K            +I  + +  K+DL   +T  +    + S   +   E     L++KI
Sbjct: 296 EKTVLSIMKDLDMEDIPRLTLYNKADLVENFTPTQMPFALISAKYKDSREQLQALLLDKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 356 KEIFEPFTLRVPFSKSYKIHDLESIA 381


>gi|319649390|ref|ZP_08003548.1| GTP-binding protein HflX [Bacillus sp. 2_A_57_CT2]
 gi|317399024|gb|EFV79704.1| GTP-binding protein HflX [Bacillus sp. 2_A_57_CT2]
          Length = 418

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 109/277 (39%), Gaps = 21/277 (7%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           E ++Q  L+       L         +L+ + + I        + +      +  ++DI 
Sbjct: 120 EGKLQVELAQLQY---LLPRLSGQGVQLSRLGAGIGTRGPGETKLESDRRHIRRRIDDIK 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
              + I  H  + +        ++I ++G++NAGKS++FN L++ + +   +    T D 
Sbjct: 177 TQLSVIVQHRDRYRERRKKNKAFQIALVGYTNAGKSTIFNRLSEAE-SYEENQLFATLDP 235

Query: 258 LTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----- 311
           +T  L L  G++  ++DT G  +          + T  EV  ADL+L + ++++      
Sbjct: 236 MTRKLILPSGFITLVTDTVGFIQDLPTTLIAAFRSTLEEVNEADLLLHVVDMSNPDYYQH 295

Query: 312 -----KEISFPKNIDFIF--IGTKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKS 360
                K I   +N       +  K DL    +          IS+F  +   EL  KI+ 
Sbjct: 296 EQTVNKLIEDLENDKIPQLTVYNKRDLKHPDFVPTARTETIQISAFEEDDRNELKRKIEQ 355

Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
           ++    K     +PS +  L    +    L   + NE
Sbjct: 356 MILGMMKHYHVEVPSTEGKLLSQLKNETILRELTFNE 392


>gi|333009349|gb|EGK28805.1| GTP-binding proten HflX [Shigella flexneri K-218]
          Length = 426

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 95/278 (34%), Gaps = 27/278 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           +   E + ++ +  +    + L   W   L   +  I        + +      +  +  
Sbjct: 115 ACTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIVQ 173

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T 
Sbjct: 174 IQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT-EARVYAADQLFATL 232

Query: 256 DVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------- 307
           D     +D+       ++DT G             K T  E   A L+L + +       
Sbjct: 233 DPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRVQ 292

Query: 308 -----INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLEE 353
                +N+  E      I  + +  K D+   +    D           +S+ TG G+ +
Sbjct: 293 ENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIPQ 352

Query: 354 LINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 353 LFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|307321975|ref|ZP_07601356.1| GTP-binding proten HflX [Sinorhizobium meliloti AK83]
 gi|306892399|gb|EFN23204.1| GTP-binding proten HflX [Sinorhizobium meliloti AK83]
          Length = 465

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 35/213 (16%)

Query: 202 DISSHISQGKLGEIIRNGYK-------IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +   + Q +    +    +       + ++G++NAGKS+LFN +    V +  D+   T
Sbjct: 204 KLERELEQVRRTRQLHRSKRKKVPHPIVALVGYTNAGKSTLFNRMTGAGV-LAEDMLFAT 262

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L  G +V +SDT G             + T  EV  ADL+L +++++    
Sbjct: 263 LDPTLRRLKLPHGRMVILSDTVGFISDLPTHLVAAFRATLEEVLEADLVLHVRDLSDPDN 322

Query: 314 ISFPKN----------------IDFIFIGTKSDLYSTYTEEY----------DHLISSFT 347
            +   +                   + +  K D       E              +S+ T
Sbjct: 323 QAQASDVLRILADLGIDEKEGAERIVEVWNKIDKVEPEVREALVKKAASADNTVAVSAMT 382

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           GEG+++L+ +I   LS    +    +   +  L
Sbjct: 383 GEGVDDLLTEIGRRLSGVMTECTVVLGLDQLQL 415


>gi|284924491|emb|CBG37625.1| putative ATP/GTP-binding protein [Escherichia coli 042]
          Length = 290

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 103/247 (41%), Gaps = 27/247 (10%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHIQE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMIITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELINKIKSILSNKFKK 368
           + I    +   +F+ T++D  +    E+D      S    + + E  + +  +       
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREKTDAVFRLFRPVHPV 195

Query: 369 LPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
           +  S  +       +S  +  L    AS        ++  E++R  +    + TG V   
Sbjct: 196 VAVSACTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV--- 250

Query: 427 QLLDIIF 433
              D IF
Sbjct: 251 ---DRIF 254


>gi|254509317|ref|ZP_05121407.1| GTP-binding protein HflX [Vibrio parahaemolyticus 16]
 gi|219547746|gb|EED24781.1| GTP-binding protein HflX [Vibrio parahaemolyticus 16]
          Length = 429

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 107/301 (35%), Gaps = 28/301 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     ++    QG+          + ++G++NAGKS+LFN + +  V    D    T
Sbjct: 173 TILRRLEKVAKQREQGRRARSRAEIPTVSLVGYTNAGKSTLFNRITEAGV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     ++L       ++DT G             K T  E + AD++L + + + ++ 
Sbjct: 232 LDPTLRKIELSDVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASDERF 291

Query: 313 -----------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                      E      I  + +  K D         +           +S+  G+G+E
Sbjct: 292 RENIQAVHDVLEEIEANEIPALIVMNKIDNLDGQNPRIERDDEGVVQTVWVSAMEGKGIE 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
            L   +   L+++  +    IP   +H   L  T   ++     E D   +++  ++R+ 
Sbjct: 352 LLFEALTERLASQMVQYQMRIPP--QHQGRLRSTFFQMKCIQHEEYDQDGNLL-IDVRMQ 408

Query: 413 S 413
            
Sbjct: 409 Q 409


>gi|296119858|ref|ZP_06838412.1| GTP-binding protein Era [Corynebacterium ammoniagenes DSM 20306]
 gi|295967012|gb|EFG80283.1| GTP-binding protein Era [Corynebacterium ammoniagenes DSM 20306]
          Length = 332

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 77/209 (36%), Gaps = 28/209 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ +  +G  N GKS+L NAL  + +AI  D P TTR  +   +  E   + + DT G
Sbjct: 35  RSGF-VSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGLVHREDAQIIVVDTPG 93

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFIFIG 326
           +     ++ +   +      ++ D+I L    + K                     I I 
Sbjct: 94  LHRPRTLLGERLNEIVKETYQDVDVIGLTIPADEKIGPGDRWILDNVREIAPKTPIIGIV 153

Query: 327 TKSD-----------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           TK D                 L +   +     +S+     ++ELI      L    K  
Sbjct: 154 TKLDRASKDQVGAQLLALHELLSAEDPDAVVIPVSAAENVQIDELIGVFIEALPEGPKFY 213

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           P    +   +   +S+ +R   ++ L ++
Sbjct: 214 PDDHLTDDDNNKRISELIREAALSGLKDE 242


>gi|329117631|ref|ZP_08246348.1| ferrous iron transport protein B [Streptococcus parauberis NCFD
           2020]
 gi|326908036|gb|EGE54950.1| ferrous iron transport protein B [Streptococcus parauberis NCFD
           2020]
          Length = 717

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 89/230 (38%), Gaps = 40/230 (17%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G+ N+GK+SLFN L   +   V + PG T D  +  L ++   ++I D  G+   
Sbjct: 3   KVTLIGNPNSGKTSLFNLLTGSNQK-VGNWPGVTVDRKSGFLKID-KQIEIQDLPGVYSL 60

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYST 334
                +E + R +L      LI+ + + ++ +                + +    D+   
Sbjct: 61  SPYTSEEKVARDYLLCGQLQLIVDVLDASNLERNLYLATQLLELGFPCLLVLNMMDVVER 120

Query: 335 YTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
              +                IS+   +G+++++  I+ ++ +     P   P ++     
Sbjct: 121 NGNQISCDKLSYLLSVPVVSISAIKNKGIDKMVKYIQKLVHSG---SPSPYPIYEDSFEA 177

Query: 383 LSQTVRYLEMASLNEKDCGLD-------------IIAENLRLASVSLGKI 419
               +  L    L + D GL              ++ E+L L+S  + +I
Sbjct: 178 ALSQIEQL----LTDYDLGLSRRHYLIKLFERDPLVQEHLELSSDIISEI 223


>gi|304317714|ref|YP_003852859.1| ferrous iron transporter B [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779216|gb|ADL69775.1| ferrous iron transport protein B [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 596

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 39/232 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
               ++G+ N GK++LFN L   +   V + PG T +     +      VK+ D  GI  
Sbjct: 2   ITAALIGNPNVGKTTLFNLLTGSNQ-HVGNWPGVTVEKKEGFVSEN---VKLVDLPGIYA 57

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYS 333
            D    +E I + FLE  + DLIL + + ++ +   +        N   + I    D+  
Sbjct: 58  MDTYSNEEKISKAFLESGDVDLILNIVDASNLQRNLYLTMQLKEFNKPIVLILNMVDVAE 117

Query: 334 TYTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           +   + D+             I +  G+G+++L   +      +      S   +  H  
Sbjct: 118 SKGVKIDYDKLSKLLNVLVVPIIAAKGKGVDKLEELLAKGDFLETYNDNNSHYHNILHFK 177

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
             ++T +Y+E           +I+++ L   S +         + + LD IF
Sbjct: 178 SEAETYKYIE-----------EILSQCLTYTSEN------TTTISEKLDKIF 212


>gi|313679731|ref|YP_004057470.1| GTP-binding protein hflx [Oceanithermus profundus DSM 14977]
 gi|313152446|gb|ADR36297.1| GTP-binding protein HflX [Oceanithermus profundus DSM 14977]
          Length = 554

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 93/248 (37%), Gaps = 21/248 (8%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T     ++ +  +   L  L G+   +L+ +   I        + +V      E ++
Sbjct: 292 HARTPQAEAQVELAQLRYLLPRLVGK-GKQLSRLGGGIGTRGPGETKLEVDRRRIGERIH 350

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +      I+    + +          + I+G++NAGK++L  AL +K  A    +  T 
Sbjct: 351 RLTREIERIAKQRREARKSRKRNRVPVVAIVGYTNAGKTTLLRALTRKGDAGENKLFATL 410

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           R  LT    L GY  V  +DT G             + T  E+  ADL+L + +  +   
Sbjct: 411 R-PLTRRGYLPGYGEVLFTDTVGFIRDMPPALVTAFRATLEELFEADLVLHVVDATADGA 469

Query: 314 ISFPK-----------NIDFIFIGTKSDLYSTYT-----EEYD-HLISSFTGEGLEELIN 356
           +   +               + +  K D    +      E+ D   +S+  G GLE+L +
Sbjct: 470 LEHHRVVEDRLVEMGLEAPRLVVVNKIDRADPFDRMRLEEQLDGVAVSALEGRGLEDLAS 529

Query: 357 KIKSILSN 364
           +I  +L  
Sbjct: 530 RIVRVLIG 537


>gi|206576585|ref|YP_002240728.1| GTPase family protein [Klebsiella pneumoniae 342]
 gi|206565643|gb|ACI07419.1| GTPase family protein [Klebsiella pneumoniae 342]
          Length = 291

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G S AGKSSL N L + +V+ V+D+   TRDVL   L    + + I D  G+ E +
Sbjct: 39  IGIMGKSGAGKSSLCNELFRGEVSPVSDVNACTRDVLRFRLRSGRHSLVIVDLPGVGE-N 97

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNIDFIFIGTKSDLY 332
            + + E        +   DL+L + + + +           +  P     +F+  ++D  
Sbjct: 98  GLRDHEYRALYCRMLPELDLVLWVIKADDRALTVDEQFWHGVMQPYRQKVLFVINQADKI 157

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                E+D L S  +   L  L  K  +I++      P  + 
Sbjct: 158 EP-CHEWDTLTSKPSPHQLGNLKAKQAAIMAMFKPHHPVCVV 198


>gi|303245062|ref|ZP_07331382.1| ferrous iron transport protein B [Methanothermococcus okinawensis
           IH1]
 gi|302484581|gb|EFL47525.1| ferrous iron transport protein B [Methanothermococcus okinawensis
           IH1]
          Length = 673

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 85/214 (39%), Gaps = 29/214 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I ++G+ N GKS++FNAL      I  + PG T +    +    G+  K+ D  G+  
Sbjct: 3   YEIALIGNPNTGKSTVFNALTGLKQHI-GNWPGVTVEKKEGEFKYGGFKYKVVDLPGVYG 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                  E + R ++  E  ++++ + + ++ +              + +    K DL  
Sbjct: 62  LTARSVDEQVARDYIINEKPNVVVDIVDASNIERNLYLTFQLLEIGANVVIALNKMDLAK 121

Query: 334 TYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI--PSHKRH 379
                 D              + +   +G+EEL   I   +  K  ++ +S   P   R 
Sbjct: 122 EMGYNIDVKRLEELLGVPVVPMIASKEQGIEELKKTIDKSIGKKPSEVIYSNFEPYILRL 181

Query: 380 LYHLSQ--------TVRYLEMASLNEKDCGLDII 405
           +  LS+         ++YL + SL   D  ++II
Sbjct: 182 INILSKDNGLKDKYNLKYLAIKSLENDDYVIEII 215


>gi|148239678|ref|YP_001225065.1| membrane associated GTPase [Synechococcus sp. WH 7803]
 gi|147848217|emb|CAK23768.1| Membrane associated GTPase [Synechococcus sp. WH 7803]
          Length = 531

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 29/250 (11%)

Query: 197 LFLKNDI--SSHISQGKL--GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
             L++D+   S + + +    ++ R   ++V+ G  ++GK+SL  AL +  V  V    G
Sbjct: 106 ARLQDDVARQSLLEERERVARQLHRGDLEVVVFGTGSSGKTSLIRALLRDIVGEVGASMG 165

Query: 253 TTRDVLTIDLDLEGYL--VKISDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLLKE 307
           +T +  +  L L+G    V + DT GI E        E++  +R       ADL+L++ +
Sbjct: 166 STSESRSYRLRLKGLERGVLLVDTPGILEGGQDGRTREQQARQRA----SRADLMLVVVD 221

Query: 308 INSK-KEISFPK-----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            + + +E++  +         + +  K DL     E     +      G     + + + 
Sbjct: 222 GDLRSQELAIVQSLSGLGKRLLLVLNKCDLRGEDEERRLLQLLRERCLGWLSPEDVVGTS 281

Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421
            + +    P   P          +    L   ++     G +++A+N+ L   SLG+ TG
Sbjct: 282 AAPQSLPRPGQNPWQPP-----PEVGALLTRLAVVLHQDGEELLADNILLQCRSLGE-TG 335

Query: 422 CVDVEQLLDI 431
                 LLD 
Sbjct: 336 RT----LLDQ 341


>gi|300869297|ref|ZP_07113888.1| small GTP-binding protein [Oscillatoria sp. PCC 6506]
 gi|300332674|emb|CBN59086.1| small GTP-binding protein [Oscillatoria sp. PCC 6506]
          Length = 472

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 19/170 (11%)

Query: 198 FLKNDISSHIS--QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
            L+ ++ + +      L ++ +N  +I   G  + GKS++ NAL  + +     + G T+
Sbjct: 57  ELQAELQTQLDVLNSTLEKLDQNVIRIAAFGLVSRGKSAVLNALLGQKILQTGPLNGVTQ 116

Query: 256 DVLTIDLDL------EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK--- 306
              ++   +          +++ DT G+ E    V  E  K+       AD IL +    
Sbjct: 117 WPRSVRWTIPQSLTKGDIQLELIDTPGLDEVGGEVRGEMAKQV---TRQADFILFVVAGD 173

Query: 307 ----EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
               E ++ +E+   +    I I  K DLY     +  +      G+G E
Sbjct: 174 ITRTEYDAIRELQKFQK-PLILIFNKIDLYPEIDRQAIYHNLQVLGKGEE 222


>gi|254168430|ref|ZP_04875275.1| GTPase, putative [Aciduliprofundum boonei T469]
 gi|289595771|ref|YP_003482467.1| small GTP-binding protein [Aciduliprofundum boonei T469]
 gi|197622711|gb|EDY35281.1| GTPase, putative [Aciduliprofundum boonei T469]
 gi|289533558|gb|ADD07905.1| small GTP-binding protein [Aciduliprofundum boonei T469]
          Length = 317

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 94/235 (40%), Gaps = 23/235 (9%)

Query: 141 MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
                +ME +SG       +    +  +   I+   +F              L  +  ++
Sbjct: 91  ASLVWAMEKISGFADKYARKIKG-VGKVEEAIKFRKEFYGRTSSILKQIAPKLRYLGQVR 149

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + I          +I      +VI G+ N GKS L + ++     I +  P TT+ ++  
Sbjct: 150 DIIRKL------PDINPELPTVVIAGYPNVGKSELVSKMSTAKPEIAS-YPFTTKGIVVG 202

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN-ADLILLLKEINSK-------- 311
            +++ G  V+I DT G+ +          K   L ++  AD+I+ L + +          
Sbjct: 203 HMEIRGRRVQIVDTPGLLDRPLEKRNRIEKEAILALKYLADVIVFLLDPSETCGYSMDEQ 262

Query: 312 ----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
               KEI    +I  + +  K DL  T ++      S+ TGEGLE+L+ ++ + +
Sbjct: 263 LKLLKEIKKDFDIPILEVENKVDLLCTDSQRIKI--SAKTGEGLEKLMGEVIARM 315


>gi|332203830|gb|EGJ17897.1| GTP-binding proten HflX [Streptococcus pneumoniae GA47368]
          Length = 392

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 102/266 (38%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 97  RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 156

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 157 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNILTSKTQYEADELFA-TLDA 215

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------- 309
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + +       
Sbjct: 216 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 275

Query: 310 SKKEISFPKNIDFIFI-----GTKSDLYSTYTE-EYDHLISSFTGEGLEE-----LINKI 358
            K  +S  K++D   I       K+DL   +T  +  + + S   E   E     L++KI
Sbjct: 276 EKTVLSIMKDLDMEDIPHLTLYNKADLVEDFTPTQTPYTLISAKSEDSRENLQALLLDKI 335

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 336 KEIFEAFTLRVPFSKSYKIHDLESVA 361


>gi|289432578|ref|YP_003462451.1| GTP-binding proten HflX [Dehalococcoides sp. GT]
 gi|288946298|gb|ADC73995.1| GTP-binding proten HflX [Dehalococcoides sp. GT]
          Length = 403

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 103/270 (38%), Gaps = 34/270 (12%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E Q ++ +  M   L  L GQW   L  +   I        + +      +  + 
Sbjct: 126 HANTREGQLQVELAQMQYLLPRLAGQWSH-LERLGGGIGTRGPGESQLETDKRIVRTKIR 184

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           ++    +++  H    +    +R    + ++G++N+GKSSL NA+A+ DV +  +    T
Sbjct: 185 NLKEHLDEVIIHRELYRERRRMRGVPVVSLVGYTNSGKSSLLNAVARTDV-LAENKLFAT 243

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D  T  L + G   V ++DT G          +  + T  E+  ADL++ + +I +K  
Sbjct: 244 LDPTTRRLYINGLGNVLLTDTVGFIRKLPPAIVKAFRATLEEINQADLLVHVVDITAKNA 303

Query: 314 ISFPK------------NIDFIFIGTKSDLY----STYTEEYDHL--------------I 343
               +            +   +    K DL      ++TEE                  I
Sbjct: 304 FEQCQTVEKILTDMGVADKPRLTAMNKIDLKLDTNRSWTEEEALNLLKAECPVAENTVLI 363

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           S+    GL EL   +K  L +      +++
Sbjct: 364 SAVKRWGLTELNLMLKEKLISMGFNPGYAV 393


>gi|206968833|ref|ZP_03229788.1| GTP-binding protein [Bacillus cereus AH1134]
 gi|206735874|gb|EDZ53032.1| GTP-binding protein [Bacillus cereus AH1134]
          Length = 425

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 81  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 140

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        ++I
Sbjct: 141 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQI 200

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + +     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 201 SLIGYTNAGKSTLFNRLTEAN-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 259

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      I   K            +I  I +  K 
Sbjct: 260 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKRLLSELEINHIPIITLYNKK 319

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  + +IK  +  K KK 
Sbjct: 320 DELHQNFIPFPKSDFLMTSAFEESDLLRIKEAIEMKMKKE 359


>gi|149002365|ref|ZP_01827307.1| GTP-binding protein HflX [Streptococcus pneumoniae SP14-BS69]
 gi|237650307|ref|ZP_04524559.1| GTP-binding proten HflX [Streptococcus pneumoniae CCRI 1974]
 gi|237821975|ref|ZP_04597820.1| GTP-binding proten HflX [Streptococcus pneumoniae CCRI 1974M2]
 gi|147759680|gb|EDK66671.1| GTP-binding protein HflX [Streptococcus pneumoniae SP14-BS69]
          Length = 412

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 101/266 (37%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + D  
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDTE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNILTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------- 309
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + +       
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 310 SKKEISFPKNIDFIFI-----GTKSDLYSTYTE-EYDHLISSFTGEGLEE-----LINKI 358
            K  +S  K++D   I       K+DL   +T  +  + + S   E   E     L++KI
Sbjct: 296 EKTVLSIMKDLDMEDIPHLTLYNKADLVEDFTPTQTPYTLISAKSEDSRENLQALLLDKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 356 KEIFEAFTLRVPFSKSYKIHDLESVA 381


>gi|29347668|ref|NP_811171.1| GTP-binding protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|298383464|ref|ZP_06993025.1| GTP-binding protein HflX [Bacteroides sp. 1_1_14]
 gi|29339569|gb|AAO77365.1| GTP-binding protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|298263068|gb|EFI05931.1| GTP-binding protein HflX [Bacteroides sp. 1_1_14]
          Length = 419

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 19/207 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +LN +  LK  + + I + K  +    G   ++ ++G++N GKS++ N LAK +
Sbjct: 182 EMDRRIILNRMSLLKERL-AEIDKQKATQRKNRGRMIRVALVGYTNVGKSTIMNLLAKSE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     +SDT G          +  K T  EV  ADL++
Sbjct: 241 V-FAENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLV 299

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            + +I+    +++I                 I I  K D Y TY E+    ++  T E L
Sbjct: 300 HVVDISHPGFEEQIEVVNKTLADIGGGGKPMILIFNKIDAY-TYVEKAPDDLTPRTKENL 358

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKR 378
              + ++      K +     I + +R
Sbjct: 359 T--LEELMKTWMAKMEDNCLFISARER 383


>gi|225850021|ref|YP_002730255.1| ferrous iron transport protein B [Persephonella marina EX-H1]
 gi|225645364|gb|ACO03550.1| ferrous iron transport protein B [Persephonella marina EX-H1]
          Length = 721

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 24/203 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ + G+ N GK++L NALA  ++  V + PG T +     ++ +GY + + D  G   
Sbjct: 6   IKVAVAGNPNTGKTTLINALAGTNL-HVGNWPGVTVEKKEAIIEYKGYKIHLVDLPGTYS 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPK-NIDFIFIGTKSDLYS 333
             + V +E I   FL  E  DL++ + +  + +      I   + ++  +      D   
Sbjct: 65  LSNDVAEEKIAIDFLVKEKPDLVIDVVDATNLERNLYLTIQLLEIDLPLVIALNMWDEAQ 124

Query: 334 TYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                 D               ++  GEG+ E+++ +  I  NK +              
Sbjct: 125 EKGIRIDVNKLEKLLCCKVIPTTAIKGEGVSEILDAVIQIYKNKER-----FHCSLHLED 179

Query: 382 HLSQTVRYLEMASLNEKDCGLDI 404
            L   +R L+    N +   LDI
Sbjct: 180 QLEDELRKLKECIKNIQPLLLDI 202


>gi|73748531|ref|YP_307770.1| putative GTP-binding protein [Dehalococcoides sp. CBDB1]
 gi|73660247|emb|CAI82854.1| putative GTP-binding protein [Dehalococcoides sp. CBDB1]
          Length = 382

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 103/270 (38%), Gaps = 34/270 (12%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E Q ++ +  M   L  L GQW   L  +   I        + +      +  + 
Sbjct: 105 HANTREGQLQVELAQMQYLLPRLAGQWSH-LERLGGGIGTRGPGESQLETDKRIVRTKIR 163

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           ++    +++  H    +    +R    + ++G++N+GKSSL NA+A+ DV +  +    T
Sbjct: 164 NLKEHLDEVIIHRELYRERRRMRGVPVVSLVGYTNSGKSSLLNAVARTDV-LAENKLFAT 222

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D  T  L + G   V ++DT G          +  + T  E+  ADL++ + +I +K  
Sbjct: 223 LDPTTRRLYINGLGNVLLTDTVGFIRKLPPAIVKAFRATLEEINQADLLVHVVDITAKNA 282

Query: 314 ISFPK------------NIDFIFIGTKSDLY----STYTEEYDHL--------------I 343
               +            +   +    K DL      ++TEE                  I
Sbjct: 283 FEQCQTVEKILTDMGVADKPRLTAMNKIDLKLDTNRSWTEEEALNLLKAECPVAENTVLI 342

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           S+    GL EL   +K  L +      +++
Sbjct: 343 SAVKRWGLTELNLMLKEKLISMGFNPGYAV 372


>gi|317503711|ref|ZP_07961728.1| GTP-binding protein HflX [Prevotella salivae DSM 15606]
 gi|315665232|gb|EFV04882.1| GTP-binding protein HflX [Prevotella salivae DSM 15606]
          Length = 415

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 15/195 (7%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +L  I  LK  +     Q       R    ++ ++G++N GKS++ N L+K +V
Sbjct: 181 EMDRRIILQRITLLKQRLEEIDKQKNTQRKNRGRMIRVALVGYTNVGKSTIMNLLSKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + ++     ++DT G          +  K T  EV  ADL+L 
Sbjct: 241 -FAENKLFATLDTTVRKVVIDNLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLLH 299

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTY-TEEYDHLISSFTGEGL 351
           + +I+    +++I   +             + I  K D Y     +E D    +     L
Sbjct: 300 VVDISHPDFEEQIQVVEKTLSDLGCSEKPSMIIFNKIDNYHWIEKDEDDLTPETRENIAL 359

Query: 352 EELINKIKSILSNKF 366
           E+L     + L++  
Sbjct: 360 EDLEKTWMARLNDNC 374


>gi|298676045|ref|YP_003727795.1| ferrous iron transport protein B [Methanohalobium evestigatum
           Z-7303]
 gi|298289033|gb|ADI74999.1| ferrous iron transport protein B [Methanohalobium evestigatum
           Z-7303]
          Length = 681

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 27/189 (14%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV++G  N GKS +FNAL+    AI ++ PGTT ++   D  +     +I DT G    
Sbjct: 25  RIVLVGSPNVGKSVIFNALS-DSYAIASNYPGTTVEISKGDGVIGNKKYEIIDTPGSYSL 83

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYST 334
             I E+E + +  L  E A + L + +  + + +              I +    D  + 
Sbjct: 84  LPITEEERVAQ-RLFFEKASIYLHVIDAKNLRRMLPHTLQLIEAGKPLILVLNMMDEAAE 142

Query: 335 YTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                D                S  GEG+EEL   I            F+I  +      
Sbjct: 143 RGIRIDIQKLEQMLKIPVIPAVSNKGEGIEELKKTISE---YSSNPQDFTIKYN----DD 195

Query: 383 LSQTVRYLE 391
           +   ++ +E
Sbjct: 196 IENAIKDIE 204


>gi|146298932|ref|YP_001193523.1| GTP-binding protein, HSR1-related [Flavobacterium johnsoniae UW101]
 gi|146153350|gb|ABQ04204.1| GTP-binding protein, HSR1-related [Flavobacterium johnsoniae UW101]
          Length = 409

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 17/173 (9%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L  +    I +    +    G   ++ ++G++N GKS+L NA+ 
Sbjct: 161 ETEIETDRRIVRDRISLLKEKIKTIDKQMSIQRSNRGAMVRVALVGYTNVGKSTLMNAIG 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K +V  V +    T D     + ++     +SDT G          +  K T  EV  AD
Sbjct: 221 KSEV-FVENKLFATLDTTVRKVVIKNLPFLLSDTVGFIRKLPTQLVDSFKSTLDEVREAD 279

Query: 301 LILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
           L+L + +I+               +EI    +   I +  K D Y   T + D
Sbjct: 280 LLLHVVDISHPDFEDHIESVNQILQEIK-SNDKPTIMVFNKIDAYKHLTIDDD 331


>gi|300771631|ref|ZP_07081506.1| GTP-binding protein HflX [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761620|gb|EFK58441.1| GTP-binding protein HflX [Sphingobacterium spiritivorum ATCC 33861]
          Length = 396

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 14/165 (8%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALA 240
           E       + +LN I   K  + S   Q +     R    ++ ++G++N GKS++ N ++
Sbjct: 165 ESQIESDRRMILNKISLFKERLKSIDKQNETQRKNRGEMIRVALVGYTNVGKSTIMNMIS 224

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K DV I  +    T D     + ++     +SDT G          E  K T  EV  AD
Sbjct: 225 KSDVLI-ENKLFATLDTTVRKVVIDNLPFLLSDTVGFIRKLPHHLVECFKSTLDEVREAD 283

Query: 301 LILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYS 333
           +++ + +I+                     +   I I  K D Y 
Sbjct: 284 VLIHVVDISHPNFEDHIHAVNETLKDLGALDKPVITIFNKIDAYK 328


>gi|186686358|ref|YP_001869554.1| small GTP-binding protein [Nostoc punctiforme PCC 73102]
 gi|186468810|gb|ACC84611.1| small GTP-binding protein [Nostoc punctiforme PCC 73102]
          Length = 517

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 103/256 (40%), Gaps = 36/256 (14%)

Query: 183 DVQNFSSKEVLNDILFLKNDI--SSHISQGKLGE--IIRNGYKIVILGHSNAGKSSLFNA 238
           D  + + + V   +  +++++   + +S+ +  E  + R   ++V+ G  +AGK+SL NA
Sbjct: 91  DAASTTLQAVRQQVAQIQDEVTRQALLSRSREIEANLARGEIQVVVFGTGSAGKTSLVNA 150

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           +  + V  V    GTT+   T  L L+G    + I+DT GI E   +   E  +      
Sbjct: 151 IMGRMVGQVDAPMGTTQVGETYCLRLKGLERKILITDTPGILEAG-VAGTEREQMARELA 209

Query: 297 ENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
             ADL+L + + + ++    P           + +  K+DLY              T E 
Sbjct: 210 TEADLLLFVVDNDLRRSEYEPLRGLAEIGKRSLLVLNKTDLY--------------TDED 255

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS---------QTVRYLEMASLNEKDCG 401
            E ++ +++  +            +       L            V  L   +   +  G
Sbjct: 256 KESILARLRQRVRGFIATNDVVAIAANPQSAQLETGETYQPEPDIVPLLRRTAAVLRAEG 315

Query: 402 LDIIAENLRLASVSLG 417
            D++A+N+ L S+ LG
Sbjct: 316 EDLVADNILLQSLRLG 331


>gi|324327599|gb|ADY22859.1| GTP-binding protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 424

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 95/280 (33%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQW-------IDKL 165
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q        + + 
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKI 222
             +             E       + +   +  +K  ++    H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRARVDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADIILHVVDSADPNYVGHEKTVKQLLSELEINHIPIITLYNKK 318

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  +  IK  +  K K+ 
Sbjct: 319 DELHQNFIPFPKNDFLMTSAFEENDLLHIKEAIETKMKEE 358


>gi|14591027|ref|NP_143102.1| ferrous iron transport protein B [Pyrococcus horikoshii OT3]
 gi|3257622|dbj|BAA30305.1| 661aa long hypothetical ferrous iron transport protein B
           [Pyrococcus horikoshii OT3]
          Length = 661

 Score = 69.5 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 23/189 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G+ N GK+++FNAL       V + PG T +     +  +G    I D  GI    
Sbjct: 5   VALVGNPNVGKTTIFNALTG-MRQHVGNWPGVTVEKKEGIMKYKGEEYLIVDLPGIYSMT 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYST 334
                E I R F+   NA +I+ + + +          E+      + I +  K D+   
Sbjct: 64  AHSIDELIARNFILEGNASVIVDIIDSSCLMRNLFLTLELFEMGVKNVIIVLNKIDMIKK 123

Query: 335 YTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH---KRH 379
              + D               ++ TGEGL+EL  KI  ++  K    P         +R 
Sbjct: 124 KGVKIDIKEMERIFGVPVVPTNAKTGEGLDELKRKISLMVEGKITTNPLIPKYDEDIERE 183

Query: 380 LYHLSQTVR 388
           + H+S+ ++
Sbjct: 184 IRHVSEVIK 192


>gi|300819090|ref|ZP_07099293.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|300528390|gb|EFK49452.1| conserved hypothetical protein [Escherichia coli MS 107-1]
          Length = 290

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTCHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVYAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQRVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELCTESVRGQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|225075385|ref|ZP_03718584.1| hypothetical protein NEIFLAOT_00390 [Neisseria flavescens
           NRL30031/H210]
 gi|224953203|gb|EEG34412.1| hypothetical protein NEIFLAOT_00390 [Neisseria flavescens
           NRL30031/H210]
          Length = 309

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 43/220 (19%)

Query: 202 DISSHI-SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           DI + + ++ +     R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T 
Sbjct: 2   DIETFLQNESQHPTDYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTG 60

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----------------ENADLILL 304
               +       DT G +        + + +   E                  +AD ++L
Sbjct: 61  IYTDDTAQFVFVDTPGFQTNHRNALNDRLNQNVTEALSGVDVVVFVVEAMRFTDADRVVL 120

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSD------------LYSTYTEEYDHL----ISSFTG 348
                       PK+   + +  K D              +   +E++      +S+  G
Sbjct: 121 ---------KQLPKHTPVVLVVNKIDKDKAKDKFALEAFINEVRQEFEFTASEAVSAKHG 171

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             +  L+  +K  L       P  + + K   +   + VR
Sbjct: 172 LRIANLLELLKPYLPESIPMYPEDMVTDKSSRFLAMEIVR 211


>gi|254512246|ref|ZP_05124313.1| GTP-binding protein Era [Rhodobacteraceae bacterium KLH11]
 gi|221535957|gb|EEE38945.1| GTP-binding protein Era [Rhodobacteraceae bacterium KLH11]
          Length = 302

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 24/172 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGEAQLVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK------------------EINSKKEISFPK 318
           + +    +++  +   +    +AD+++L+                   EI   + I+   
Sbjct: 63  LFKPRRRLDRAMVAAAWGGAADADVVVLMVEAHRGITEGVERILEGLEEIGQGRTIALAI 122

Query: 319 NIDFIFIGTK-----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           N        K     SDL + Y      +IS+  G G+++L   + S L   
Sbjct: 123 NKIDKVPSEKLLALTSDLNARYPFAETFMISAEKGHGVDDLRQWLASELPEG 174


>gi|297619781|ref|YP_003707886.1| small GTP-binding protein [Methanococcus voltae A3]
 gi|297378758|gb|ADI36913.1| small GTP-binding protein [Methanococcus voltae A3]
          Length = 186

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 34/177 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL----------DLEGYLV 269
           YKI ++G  N+GKSS+ N +  K ++ V+++ GTT+  +              + E   +
Sbjct: 8   YKIAMMGPENSGKSSIINKIFGKSISEVSEVGGTTKKPVKKFWGKLKIGRLKQNPEFADI 67

Query: 270 KISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------- 318
             +D  G+   +D   ++    +++TF E++++D+I+ + +       SF K        
Sbjct: 68  TFADLGGLYSGEDKSVVMVGNVLEKTFEEIDSSDMIIHVIDAKEGLFKSFEKLHHLLKYR 127

Query: 319 -NIDFIFIGTKSDL------------YSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                I I  K DL                     +  S+ + EG+ ELIN I +IL
Sbjct: 128 YQKPIIVIVNKCDLLTPSERNSLNEAIEERLNNKVYFTSAMSYEGINELINVIITIL 184


>gi|146278604|ref|YP_001168763.1| GTP-binding protein Era [Rhodobacter sphaeroides ATCC 17025]
 gi|145556845|gb|ABP71458.1| GTP-binding protein Era [Rhodobacter sphaeroides ATCC 17025]
          Length = 304

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 74/206 (35%), Gaps = 25/206 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 6   RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGETQIVFVDTPG 64

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN-----------SKKEISFPKNIDFIFI 325
           +      +++  +   +    +AD+I+LL E +                  P+       
Sbjct: 65  LFRPRRRLDRAMVAAAWGGAADADVIVLLVEAHRGLTEGTQAIIDAMRDRIPQGQAVALA 124

Query: 326 GTKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D             L + +      +IS+  G G+++L   +  +L       P  
Sbjct: 125 INKIDRVKAEVLLGLAQELNAAFPFAETFMISAEKGYGVDKLRQWLAGVLPEGPWFYPED 184

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEK 398
             +        ++  R      L+E+
Sbjct: 185 QIADVPMRAIAAEITREKLTLRLHEE 210


>gi|325263065|ref|ZP_08129800.1| ferrous iron transport protein B [Clostridium sp. D5]
 gi|324031458|gb|EGB92738.1| ferrous iron transport protein B [Clostridium sp. D5]
          Length = 679

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 33/220 (15%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R    I  +G+ N GK++LFNA    ++  V + PG T + +   +      +++ D  
Sbjct: 1   MRENLTIGFIGNPNCGKTTLFNAYTGANLK-VANWPGVTVEKVEGAIKDHDLNIRLVDLP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKS 329
           G         +E + R F+  +  D+I+ + + ++ +                +      
Sbjct: 60  GTYSLTSYTMEEQVSRQFILSDEVDVIIDVADASALERNLYLTLQLLELGKPVVLALNMM 119

Query: 330 DLYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH- 376
           D+      E D              +S+    GL+ L   + +   +K  K P  +  H 
Sbjct: 120 DIVEKRGMEIDTHRLPEMLGIPVIPVSARKRTGLDVL---LHAAAHHKDCKDPECLIHHH 176

Query: 377 -----KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
                 RH +H    + Y +          +D+I   L+ 
Sbjct: 177 KYTPKHRHDHHSEYAMVYSDAIEDK-----IDLIMAELKR 211


>gi|298291760|ref|YP_003693699.1| GTP-binding proten HflX [Starkeya novella DSM 506]
 gi|296928271|gb|ADH89080.1| GTP-binding proten HflX [Starkeya novella DSM 506]
          Length = 463

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 37/197 (18%)

Query: 202 DISSHISQGKLGEIIRNGYK-------IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I   + Q K    +    +       + ++G++NAGKS+LFN L + DV    D+   T
Sbjct: 201 KIERELEQVKRTRALHRASRKKVPYPVVALVGYTNAGKSTLFNRLTRSDVM-AQDLLFAT 259

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---- 309
            D     + L  G  + +SDT G             + T  EV  ADLIL +++++    
Sbjct: 260 LDPTLRAVQLPSGERIILSDTVGFISDLPTQLVAAFRATLEEVIEADLILHVRDMSHEDA 319

Query: 310 -----------SKKEISFPKNIDFIFIGTKSDLYST-------------YTEEYDHLISS 345
                      S  +I    +   I +  K D                   +     +S+
Sbjct: 320 EAQAHDVEAVLSDLDIDPEDDHRVIEVWNKIDRLDEEGRARLFNTAERREGDARPIPVSA 379

Query: 346 FTGEGLEELINKIKSIL 362
            TGEG++ L+  I   L
Sbjct: 380 LTGEGVDALLVAIGQRL 396


>gi|149910175|ref|ZP_01898821.1| HflX, putative GTPase subunit of protease with nucleoside
           triPhydrolase domain [Moritella sp. PE36]
 gi|149806761|gb|EDM66725.1| HflX, putative GTPase subunit of protease with nucleoside
           triPhydrolase domain [Moritella sp. PE36]
          Length = 429

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 102/289 (35%), Gaps = 23/289 (7%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 114 RARTHEGKLQVELAQLRHMSTRLIRGWTH-LERQKGGIGMRGPGETQLETDRRLLRVRMD 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL   + + +   QG+     R    I ++G++NAGKS+LFN L    V     +  T 
Sbjct: 173 SILRRLDKVVTKRDQGRRSRKRREIPTISLVGYTNAGKSTLFNRLTDAKVYAADQLFATL 232

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------- 307
              L      +   V ++DT G             K T  E   ADL+L + +       
Sbjct: 233 DPTLRRLTVADVGEVVLADTVGFIRHLPHDLVAAFKATLTETREADLLLHVIDCADENMR 292

Query: 308 -----INSKKEISFPKNIDFIFIGTKSDL---------YSTYTEEYDHLISSFTGEGLEE 353
                +NS         +  + +  K D          Y    +  +  +S+ +G+G   
Sbjct: 293 GNIIEVNSVLTEIDAGEVPVLMVYNKVDKLDDGRCRIDYDDEGKPVNVWLSAMSGDGTAF 352

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           L   +  +L++  + +   + + + ++      +  +E  +  E    L
Sbjct: 353 LYQALTELLASTMQVVKLQLSAMQGNIVSHLYNLDCIEHEAFAENGDWL 401


>gi|227503450|ref|ZP_03933499.1| HflX family GTP-binding protein [Corynebacterium accolens ATCC
           49725]
 gi|227075953|gb|EEI13916.1| HflX family GTP-binding protein [Corynebacterium accolens ATCC
           49725]
          Length = 502

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 30/219 (13%)

Query: 188 SSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV 244
             + +  ++  L+ ++       + K      +   +I I G++NAGKSSL NA+    V
Sbjct: 239 DRRRIRTEMARLRKELRGMKTAREVKRSRRQSSTIAQIAIAGYTNAGKSSLINAMTNAGV 298

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D  T    L +G  V  +DT G          E  K T  EV  AD++L
Sbjct: 299 -LVEDALFATLDPTTRRASLADGRQVVFTDTVGFVRHLPTQLVEAFKSTLEEVLAADIML 357

Query: 304 LLKEINSKKEISF----------------PKNIDFIFIGTKSD---------LYSTYTEE 338
            + + +    +                   +    I +  K D         L      E
Sbjct: 358 HVVDGSDPFPLKQIEAVNEVIYDIVSETGEQAPPEIIVINKIDQADPLVLAELRHVLDHE 417

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
               +S+ TGEG++EL  +++  L+++   +   +P  +
Sbjct: 418 DVVYVSARTGEGIDELSARVELFLNSRDSHVKLQVPFTR 456


>gi|114569999|ref|YP_756679.1| small GTP-binding protein [Maricaulis maris MCS10]
 gi|114340461|gb|ABI65741.1| GTP-binding protein HflX [Maricaulis maris MCS10]
          Length = 450

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 88/234 (37%), Gaps = 37/234 (15%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSSLFNALAKKDV 244
             + +   +  L+  +        L    R       + ++G++NAGKS+LFN L    V
Sbjct: 166 DRRLLNEKMAKLRRQLDEVRRTRALHRSQRQDVPFPTVALVGYTNAGKSTLFNKLTGAGV 225

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D+P  T D     +DL  G  + +SDT G             + T  EV  ADL++
Sbjct: 226 -FAQDMPFATLDPTVRAVDLPGGTRILLSDTVGFITDLPTELIAAFRATLEEVREADLLV 284

Query: 304 LLKEINSKK---------------EISFPKNIDFIFIGTKSD-LYSTYTEEYDHLI---- 343
            + + +                  E     +   +    KSD L    TE+    I    
Sbjct: 285 HIIDASDPDREGRIQDVESVLDAIEAGPAHDQAMLEAWNKSDRLDDESTEDLAITIQMAN 344

Query: 344 -----------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSH-KRHLYHLSQ 385
                      S+ TG+G++ LI+ I+  LS++ ++L   +P    R L  L  
Sbjct: 345 LKAGKPVKLAVSAVTGQGVDSLIDAIERTLSSENERLQIIVPPQDARALAWLHA 398


>gi|294054588|ref|YP_003548246.1| GTP-binding proten HflX [Coraliomargarita akajimensis DSM 45221]
 gi|293613921|gb|ADE54076.1| GTP-binding proten HflX [Coraliomargarita akajimensis DSM 45221]
          Length = 421

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 115/296 (38%), Gaps = 31/296 (10%)

Query: 114 SRRAFENGKIDLLEAESLADLI--SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRS 170
             +A  N  + +   E + D+    ++T+    ++ +  +   L  L   W   L   R 
Sbjct: 89  WEQAGNNKILVIDRQEVILDIFGDRAQTKEAVLQVELARLEYNLPRLKRAWTH-LDRQRG 147

Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGH 227
                 D  E +       + V   I  +K ++ S I    L    R    +    I+G+
Sbjct: 148 GGAMQRDAGETQL--ELDQRMVRTQIARVKRELDSVIQHRHLQRKKRMTVPVPTCAIVGY 205

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEK 286
           +NAGKSSL N L   D+ +  D    T D  +    L  G  + I+DT G          
Sbjct: 206 TNAGKSSLLNKLTNSDI-LAEDKLFATLDPTSRRCPLPSGQPLVITDTVGFVRNLPHRLV 264

Query: 287 EGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSD-LYS 333
           +  K T  E   ++ +L + ++NS +  +              K+   I +  K D L+ 
Sbjct: 265 DAFKATLEEAVVSNFLLHVLDVNSPEVEAHAETTLSVLHELGAKDKQIITVFNKIDALWD 324

Query: 334 TYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
             T +           IS+ +GEG+++L+  I++I+   + +L   IP  +  L  
Sbjct: 325 PETMDSLKLRYPDAFFISAHSGEGVDQLLAAIEAIIEANYAQLRLLIPHSRYDLVA 380


>gi|253572128|ref|ZP_04849532.1| GTP-binding protein [Bacteroides sp. 1_1_6]
 gi|251838308|gb|EES66395.1| GTP-binding protein [Bacteroides sp. 1_1_6]
          Length = 419

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 19/207 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +LN +  LK  + + I + K  +    G   ++ ++G++N GKS++ N L+K +
Sbjct: 182 EMDRRIILNRMSLLKERL-AEIDKQKATQRKNRGRMIRVALVGYTNVGKSTIMNLLSKSE 240

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     +SDT G          +  K T  EV  ADL++
Sbjct: 241 V-FAENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLV 299

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            + +I+    +++I                 I I  K D Y TY E+    ++  T E L
Sbjct: 300 HVVDISHPGFEEQIEVVNKTLADIGGGGKPMILIFNKIDAY-TYVEKAPDDLTPRTKENL 358

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKR 378
              + ++      K +     I + +R
Sbjct: 359 T--LEELMKTWMAKMEDNCLFISARER 383


>gi|62184900|ref|YP_219685.1| putative GTP-binding protein [Chlamydophila abortus S26/3]
 gi|62147967|emb|CAH63715.1| putative GTP-binding protein [Chlamydophila abortus S26/3]
          Length = 462

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 79/229 (34%), Gaps = 22/229 (9%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
             K            +  ++ ++     +E ++ +      +     + +  +  R    
Sbjct: 170 RQKSGGGSGGGFVKGEGEKQIELDRRMIRERIHKLTLDLKSVEKQRKEQRKAKEKRGIPS 229

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
             ++G++N+GKS+L N L   +   V D    T D  T    L  G  V ++DT G    
Sbjct: 230 FALIGYTNSGKSTLLNLLTSAE-TYVEDKLFATLDPKTRRCVLPSGQRVLVTDTVGFIRK 288

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTK 328
                    K T     + D++L + + +        +            +   I +  K
Sbjct: 289 LPHTLVAAFKSTLEAALHEDVLLHVVDASHPLAFEHIETTQEILKELGVDHPKIITVLNK 348

Query: 329 SDLYST--------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
            D                   +IS+ TGEG++ L+  +  I++  F ++
Sbjct: 349 IDELPEGKAPTKLRLLSPRAVVISAKTGEGIQNLLEAMTDIITEGFPQV 397


>gi|258591961|emb|CBE68266.1| putative GTPase [NC10 bacterium 'Dutch sediment']
          Length = 389

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 23/221 (10%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
           +L+ +   I        + +    + +  +  I      +  H +  +          + 
Sbjct: 150 QLSRLGGGIGTRGPGETQLETDRRTIRRRMAKIREELAKVRRHRALLRRPRKRHAIPIVA 209

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDD 282
           ++G++NAGKS+LFNAL    V    D    T D +   + + +G+   +SDT G      
Sbjct: 210 LVGYTNAGKSTLFNALTHSGVQ-TDDALFVTLDPILRRVTMADGFGFLLSDTVGFIRRLP 268

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF------------IGTKSD 330
                  K T  E++ ADL+L + + +  + +   + +D I             +  K D
Sbjct: 269 EQLVTAFKATLEELDEADLLLHVIDASHPQVMEQKEAVDTILRELGLSTKPIVEVFNKMD 328

Query: 331 LYSTYTEE---------YDHLISSFTGEGLEELINKIKSIL 362
             +    +             IS+ TG GL+ L+  ++  L
Sbjct: 329 RLTGGIGQSFIGGKTIVPRVAISALTGYGLDRLLQTVRESL 369


>gi|229829322|ref|ZP_04455391.1| hypothetical protein GCWU000342_01409 [Shuttleworthia satelles DSM
           14600]
 gi|229792485|gb|EEP28599.1| hypothetical protein GCWU000342_01409 [Shuttleworthia satelles DSM
           14600]
          Length = 444

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 79/226 (34%), Gaps = 25/226 (11%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             +  + ++H    +     +      I+G++NAGKS+L NAL    V +  DI   T D
Sbjct: 207 KAMSQEAAAHRQLTREHRKRQQMPVAAIVGYTNAGKSTLLNALTGAGV-LAQDILFATLD 265

Query: 257 VLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             T  +DL G   + ++DT G          +  + T  E + AD I+ L + +      
Sbjct: 266 TTTRIVDLGGSETMLLTDTVGFIRKLPHGLIDAFRSTLEEAKYADYIIQLVDASDPDMEE 325

Query: 316 FP------------KNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINK 357
                         KN   + +  K D        +D        IS+ TG GL E+   
Sbjct: 326 RMHVVRQTLDELGVKNKKILTLFNKCDRLEEDLSLHDFRADKSLCISARTGMGLHEVRQA 385

Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
           +   L     +    +         +    R  E   + E+    D
Sbjct: 386 LADFL-----REDRVLVERVLDYQKMQLLARIHERGQVLEESYEED 426


>gi|189502569|ref|YP_001958286.1| hypothetical protein Aasi_1232 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498010|gb|ACE06557.1| hypothetical protein Aasi_1232 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 395

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 34/221 (15%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAI 246
             + V + I  L+  + S   Q       R    ++ ++G++N GKS+L + L+K D A 
Sbjct: 170 DRRIVQDKISLLRKKLESINKQSITQRKTRQDLVRVALVGYTNVGKSTLMHLLSKSD-AY 228

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           V D    T       + +      ++DT G          E  K T  E+  AD++L + 
Sbjct: 229 VEDKLFATITSTVRRVVINHIPFLLTDTVGFIRKLPHTLIESFKSTLDEIREADILLHVV 288

Query: 307 EIN---SKKEISF---------PKNIDFIFIGTKSD-------------------LYSTY 335
           + +    ++ I            ++I  I +  K D                   + + Y
Sbjct: 289 DASHPACEEHIQVVQQTLHEIGAEHIPAILVFNKMDQLEEENSANGQQHTITMEAISNKY 348

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            E+Y H     + +  ++ I+ +K +L  +       I  +
Sbjct: 349 AEQYGHQAIFISAKQ-QKNIDILKDMLYQQVLNKHLLIYPN 388


>gi|159155770|gb|AAI54965.1| LOC100127247 protein [Xenopus laevis]
          Length = 359

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 17/170 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I I+G  NAGKS+L N L  + V  V+    TTR      +      + + DT G+  
Sbjct: 2   LRIAIIGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQAQGVITEGETQLILLDTPGMVT 61

Query: 280 TDDIV----EKEGIKRTFLEVENADLILLLKEINS-----------KKEISFPKNIDFIF 324
              +     EK  +   +  +E+ADL+L+L +++             K +S  +NI  I 
Sbjct: 62  ASKVKRHNLEKSLLHDPWQSMESADLVLVLLDVSDHWTRCSLNFEVLKCLSQYQNIPSIL 121

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGE--GLEELINKIKSILSNKFKKLPFS 372
           +  K DL        D       G   G + +I  +     N+  K   +
Sbjct: 122 VMNKVDLIKQKGILLDLTNQLTEGIVNGKKIVIKSLAKASQNRDAKANVA 171


>gi|110679965|ref|YP_682972.1| GTP-binding protein HflX, putative [Roseobacter denitrificans OCh
           114]
 gi|109456081|gb|ABG32286.1| GTP-binding protein HflX, putative [Roseobacter denitrificans OCh
           114]
          Length = 432

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 94/266 (35%), Gaps = 25/266 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ M  +S + + L   W                   + +    +  + L  
Sbjct: 128 AATREGVLQVEMAALSYQRTRLVRAWTHLERQRGGLGFVGGPGETQIEADRRAIDDQLTR 187

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +      +    +  +          I ++G++NAGKS+LFN L   DV    D+   T 
Sbjct: 188 LRRQLEKVVKTRALHRAARAKIPYPIIALVGYTNAGKSTLFNHLTGADVM-AKDMLFATL 246

Query: 256 DVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-- 312
           D     L L +G  V +SDT G             + T  EV  AD+I  +++I+  +  
Sbjct: 247 DPTMRRLRLPDGPEVILSDTVGFISDLPTELVAAFRATLEEVLAADVICHVRDISHPETE 306

Query: 313 -----------EISFPKNIDFIFIGTKSDLYSTYTEEY----------DHLISSFTGEGL 351
                       +   ++     +  K DL S    +              IS+ +GEGL
Sbjct: 307 AQAKDVQDIMTTLGVEEDRPTFELWNKLDLLSEGEADAMRARADRDPSVFAISALSGEGL 366

Query: 352 EELINKIKSILSNKFKKLPFSIPSHK 377
           + L+  +   L  K +    ++   +
Sbjct: 367 DGLLAAVTQTLQGKKRAATLTLSFSE 392


>gi|295706194|ref|YP_003599269.1| GTP-binding protein HflX [Bacillus megaterium DSM 319]
 gi|294803853|gb|ADF40919.1| GTP-binding protein HflX [Bacillus megaterium DSM 319]
          Length = 420

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 19/228 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             +  +++I      + SH  + +      + Y+I I+G++NAGKS++FN L   +  I 
Sbjct: 169 HIRRKIDEIKRQLKTVVSHRERYRERRKRNHVYQIAIVGYTNAGKSTIFNRLT--EAGIF 226

Query: 248 -TDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             +    T D  T    L  G    ++DT G  +          + T  EV  ADL+L +
Sbjct: 227 EENQLFATLDPTTRQYTLPSGLTALLTDTVGFIQDLPTTLVAAFRSTLEEVTEADLVLHV 286

Query: 306 KEINSKKEISFPK------------NIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEG 350
            + ++    +  K            +I  + +  K D+       +      +S+F    
Sbjct: 287 VDSSNPDYNNHEKTVHRLLEELNVTDIPMLTVYNKEDMQHELFVPSASTSLSMSAFKATD 346

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           L +L  +I+  +  +       +P+++  +    +TV  LE+   NE+
Sbjct: 347 LVKLGERIQEEMKKEMAFFHVLLPAYEGKMLAELKTVSILELLKFNEE 394


>gi|255007488|ref|ZP_05279614.1| putative GTP-binding protein [Bacteroides fragilis 3_1_12]
 gi|313145182|ref|ZP_07807375.1| GTP-binding protein [Bacteroides fragilis 3_1_12]
 gi|313133949|gb|EFR51309.1| GTP-binding protein [Bacteroides fragilis 3_1_12]
          Length = 417

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 80/200 (40%), Gaps = 20/200 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q       R    ++ ++G++N GKS++ N LAK +V
Sbjct: 180 EMDRRIILNRMSLLKERLAEIDKQKSTQRKNRGRMIRVALVGYTNVGKSTMMNLLAKSEV 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + ++     +SDT G          +  K T  EV  ADL++ 
Sbjct: 240 -FAENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLVH 298

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           + +I+    +++I                 I I  K D Y TY E+    ++  T E L 
Sbjct: 299 VVDISHPGFEEQIEVVNKTLADIGGGGKPMILIFNKIDAY-TYVEKAPDDLTPKTKENL- 356

Query: 353 ELINKIKSILSNKFKKLPFS 372
                ++ ++     K+  +
Sbjct: 357 ----TLEELMKTWMAKMEDN 372


>gi|239624090|ref|ZP_04667121.1| ferrous iron transport protein B [Clostridiales bacterium
           1_7_47_FAA]
 gi|239522121|gb|EEQ61987.1| ferrous iron transport protein B [Clostridiales bacterium
           1_7_47FAA]
          Length = 716

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 86/236 (36%), Gaps = 29/236 (12%)

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              +        +KN +   + +    E  R    +  +G+ N GK++LFNA     +  
Sbjct: 25  MDRESHAGKPEEMKNSMPDPVHK-DRKESTR-PITVGFVGNPNCGKTTLFNAFTGAKLK- 81

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           V + PG T + +  +   +G  +K+ D  GI        +E + R  +E    D+I+ + 
Sbjct: 82  VANWPGVTVERVEGETSYKGRPIKVIDLPGIYSLTSYTIEEKVTRKCIEDGEVDVIINVV 141

Query: 307 EINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-------------SSFT 347
           + +S +                I      D+      E D                S+  
Sbjct: 142 DASSLERNLYLTMQLIELKKPVILALNMMDIVEERGMEIDMHRLPEMLGEIPVVPVSARK 201

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
             GL+ L++     + + +++ P  +  H  +   +   +  +E A L EK   +D
Sbjct: 202 RTGLDVLMHA----VVHHYEEGPQGVVVH--YSEEVEGRISQIETA-LREKYGEMD 250


>gi|258545977|ref|ZP_05706211.1| GTP-binding protein HflX [Cardiobacterium hominis ATCC 15826]
 gi|258518782|gb|EEV87641.1| GTP-binding protein HflX [Cardiobacterium hominis ATCC 15826]
          Length = 430

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 89/275 (32%), Gaps = 25/275 (9%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  ++   + L   W   L   +  I        + +         +  +      +   
Sbjct: 126 LAQLNHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLAARIKQLQRRLARVQKQ 184

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
             + +   + R+   + + G++N+GKS+LFN L + DV     +  T             
Sbjct: 185 REENRKARLRRDIPTVALAGYTNSGKSTLFNTLTEADVYAQDQLFATLDPTWRKLQHSGP 244

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------- 318
             + ++DT G               T  E   ADL+L + ++     +   +        
Sbjct: 245 QTILMADTVGFVSDLPHELVAAFSATLEETARADLLLHVIDVADPHHLEREEVVEDVLKS 304

Query: 319 ----NIDFIFIGTKSDLYSTYTEEYD--------HLISSFTGEGLEELINKIKSILSNKF 366
               ++  + +  K DL                   +S+ TG G++ L + I +   +  
Sbjct: 305 IDAADVPTLRVYNKIDLRGEAPRVKPGADGKAEAVFLSALTGAGVDLLTDAIVAYFKSDE 364

Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           K     +  H+  L    +   Y E A L E+   
Sbjct: 365 KNGWLHLAPHEGAL----RAALYAEHAVLEERSAA 395


>gi|227821866|ref|YP_002825836.1| putative GTP-binding protein [Sinorhizobium fredii NGR234]
 gi|227340865|gb|ACP25083.1| putative GTP-binding protein [Sinorhizobium fredii NGR234]
          Length = 440

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 31/225 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   I+ L+ ++       +L    R       + ++G++NAGKS+LFN +   
Sbjct: 167 EADRRLLQERIVRLERELEQVRRTRQLHRSKRKKVPHPIVALVGYTNAGKSTLFNRMTGA 226

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D+   T D     L L  G +V +SDT G             + T  EV  ADL
Sbjct: 227 GV-LAEDMLFATLDPTLRRLKLPHGRMVILSDTVGFISDLPTHLVAAFRATLEEVLEADL 285

Query: 302 ILLLKEINSKKEISFPKN----------------IDFIFIGTKSDLYSTYTEEY------ 339
           IL +++++     +   +                   + +  K D  +    E       
Sbjct: 286 ILHVRDLSDPDNQAQASDVLRILADLGIDEKEGSERIVEVWNKIDRLAPEVREALVKKAA 345

Query: 340 ----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                  +S+ TGEG+++L+ +I   LS    +   ++   +  L
Sbjct: 346 SADNTVAVSAITGEGVDDLLGEIGGRLSGVMTECTVALGLDQLQL 390


>gi|209963483|ref|YP_002296398.1| GTP-binding protein hflX, putative [Rhodospirillum centenum SW]
 gi|209956949|gb|ACI97585.1| GTP-binding protein hflX, putative [Rhodospirillum centenum SW]
          Length = 430

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 91/257 (35%), Gaps = 34/257 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E Q ++ +  ++ + S L   W       R            E       + +  
Sbjct: 97  RARTREGQLQVELAALTYQRSRLVRSWTHL---ERQRGGFGFLGGPGESQLEIDRRLIGE 153

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  LK ++        L    R       + ++G++NAGKS+LFN +A  DV    D+ 
Sbjct: 154 RIARLKAELEEVRRTRGLHRRAREKVPYPVVALVGYTNAGKSTLFNRMAGADV-FAKDLL 212

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L     + +SDT G          E  + T  EV+ AD++L +++++ 
Sbjct: 213 FATLDPTMRAITLPSNRKIILSDTVGFISDLPHGLVEAFRATLEEVQAADIVLHVRDVSH 272

Query: 311 KK---------------EISFPKNIDFIFIGTKSDLYSTYTEEY----------DHLISS 345
                             I    +   + +  K DL      +              IS+
Sbjct: 273 PDTEAQKADVETVLRELGIEVDSDARVVEVLNKIDLVPEGERDALLRQARRTGDTVAISA 332

Query: 346 FTGEGLEELINKIKSIL 362
            TGEGL  L + I   +
Sbjct: 333 LTGEGLGGLFDLIDRRM 349


>gi|167046798|ref|YP_001661468.1| YeeP [Acinetobacter venetianus]
 gi|83833707|gb|ABC47664.1| YeeP [Acinetobacter venetianus]
          Length = 360

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 19/245 (7%)

Query: 156 SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
           +L  + I  L +        ++     D          +    ++  I       K+ EI
Sbjct: 47  NLLTEIIFILINNEINERLYVNQPYNFDQDESQPLNANSPAAEIRKRIEE-----KVKEI 101

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
                K+ + G +  GKSSL NAL  KDVA V+D+   TR+   I +  EG  +K+ D  
Sbjct: 102 RSYTPKVGVFGVTGVGKSSLCNALFGKDVAAVSDVAACTREPKEIFIGSEGAGIKLVDVP 161

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFP--KNIDFIF 324
           G+ ET +  +KE            DL++ + + + +         KEI  P  K    +F
Sbjct: 162 GVGETIE-RDKEYFALYEKLAPELDLVIWVIKADDRAYAQAEKAYKEILEPNLKKCPVVF 220

Query: 325 IGTKSDLYSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           +  + D  +   +  D  +   S   + ++  I ++        K +     + K +L  
Sbjct: 221 VINQVDKLNPLRDWDDTKNQPGSEKQKNIDAKIFEVSKAFDVSTKYIETVSVAEKYNLTK 280

Query: 383 LSQTV 387
           L  T+
Sbjct: 281 LMDTL 285


>gi|288800257|ref|ZP_06405715.1| GTP-binding protein HflX [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332470|gb|EFC70950.1| GTP-binding protein HflX [Prevotella sp. oral taxon 299 str. F0039]
          Length = 416

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 17/196 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  I  LK  +   I + K+ +    G   ++ ++G++N GKS+L N L+K +
Sbjct: 181 EMDRRIILQRISLLKERLVE-IDKQKVTQRKNRGRMIRVALVGYTNVGKSTLMNLLSKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + +E     ++DT G          +  K T  EV  ADL++
Sbjct: 240 V-FAENKLFATLDTTVRKVVIENLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLV 298

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEG 350
            + +I+  +     +            +   I I  K D Y     EE D          
Sbjct: 299 HVVDISHPEFEDHIRVVESTLKDLDAADKPSIMIFNKIDNYRWVEKEEDDLTPQGKENIS 358

Query: 351 LEELINKIKSILSNKF 366
           LEEL     + L +  
Sbjct: 359 LEELERTWMARLKDDC 374


>gi|332296610|ref|YP_004438533.1| ferrous iron transport protein B [Thermodesulfobium narugense DSM
           14796]
 gi|332179713|gb|AEE15402.1| ferrous iron transport protein B [Thermodesulfobium narugense DSM
           14796]
          Length = 720

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 75/205 (36%), Gaps = 23/205 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+  +G+ N GKS+L NAL+  ++  V + PG T +    ++ +   +  + D  G   
Sbjct: 19  VKVAFVGNPNVGKSALINALSGSNLK-VGNWPGVTVEKKEANIIINNQMFSLVDLPGAYS 77

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------------EISFPKNIDFIFI 325
            +    +E I R FL  E  D+I+ + + N  +               +    N     I
Sbjct: 78  LNPFSLEEKITRDFLIKERPDVIVNVVDSNQLEKSLFLTFALSEFEIPMVIALNFFDEMI 137

Query: 326 GTKSDLYSTYTEEY----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
             K+++      +         S   G G++EL   I   +S +           +  L 
Sbjct: 138 KNKTEIDIKKLRDILSIEVVPTSGIKGIGIDELKKAIYKSVSER----DLPNILFEEKLD 193

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIA 406
              + ++ +      +    L  +A
Sbjct: 194 KRFKRIKEILSDKKEKLGYPLSFVA 218


>gi|170683175|ref|YP_001743150.1| putative GTPase [Escherichia coli SMS-3-5]
 gi|170520893|gb|ACB19071.1| putative GTPase [Escherichia coli SMS-3-5]
          Length = 290

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 103/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +     I+G S AGKSSL NAL + ++  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVPGIMGKSGAGKSSLCNALFQGEITPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L+  G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LNGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+  ++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQRVLFVVMQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHR 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|240171198|ref|ZP_04749857.1| GTP-binding protein HflX [Mycobacterium kansasii ATCC 12478]
          Length = 480

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 93/275 (33%), Gaps = 32/275 (11%)

Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198
           +  Q    +  + G   S+  Q   +       +        + +      +E +  +  
Sbjct: 169 SLAQMEYMLPRLRGWGESMSRQAGGRAGGSGGGVGLRGPGETKIETDRRRIRERMAKLRR 228

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
              D+       +   +  +   I I+G++NAGKSSL NAL    V +V D    T +  
Sbjct: 229 EIKDMKQARDTRRSRRVHSDLPSIAIVGYTNAGKSSLLNALTGAGV-LVQDALFATLEPT 287

Query: 259 TIDLDLE---GYL--VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           T   + +   G      ++DT G          E  + T  EV +ADL++ + +      
Sbjct: 288 TRRAEFDDGSGRPGRFLLTDTVGFVRHLPTQLVEAFRSTLEEVVDADLLVHVVDGADANP 347

Query: 314 ISFPKNIDFI-------------------FIGTKSDLYSTYTEEY-------DHLISSFT 347
           ++    +  +                    +  K D  S                +S+ T
Sbjct: 348 LAQINAVRQVISEVIADRGADGGEAPQELLVVNKIDAASDLALAKLRHALPGAVFVSART 407

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           G+G++ L  ++  +++     +   IP  +  L  
Sbjct: 408 GDGVDALRRRMAELVAPTDAAVDVVIPYDRGDLVA 442


>gi|53804568|ref|YP_113568.1| ferrous iron transport protein B [Methylococcus capsulatus str.
           Bath]
 gi|53758329|gb|AAU92620.1| ferrous iron transport protein B [Methylococcus capsulatus str.
           Bath]
          Length = 595

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 17/191 (8%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS+ FN L     A V + PG T D+L+  + L G + ++ D  GI   
Sbjct: 3   RIALVGMPNTGKSTFFNRLTGAS-ARVGNWPGITVDLLSARIILGGTVAQVVDLPGIYSF 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340
               E E + R FLE    DL+ ++           P  +    +G  + L     +E  
Sbjct: 62  HGFSEDEKVVRDFLENNPVDLVAVVLNATQIDR-QLPFALQVARLGLPTVLLLNMADEAR 120

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
           HL  S     + EL+     +LS K+     S+             +R L+  + +    
Sbjct: 121 HLGISIDARRMAELLRMPVILLSAKYGNGFQSVT---------QTLLRALDSGTAH---A 168

Query: 401 GLDI---IAEN 408
             D+    +E+
Sbjct: 169 PPDVAQTFSED 179


>gi|60680164|ref|YP_210308.1| putative GTP-binding protein [Bacteroides fragilis NCTC 9343]
 gi|253564007|ref|ZP_04841464.1| GTP-binding protein [Bacteroides sp. 3_2_5]
 gi|265765306|ref|ZP_06093581.1| GTP-binding protein HflX [Bacteroides sp. 2_1_16]
 gi|60491598|emb|CAH06350.1| putative GTP-binding protein [Bacteroides fragilis NCTC 9343]
 gi|251947783|gb|EES88065.1| GTP-binding protein [Bacteroides sp. 3_2_5]
 gi|263254690|gb|EEZ26124.1| GTP-binding protein HflX [Bacteroides sp. 2_1_16]
 gi|301161688|emb|CBW21228.1| putative GTP-binding protein [Bacteroides fragilis 638R]
          Length = 417

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 80/200 (40%), Gaps = 20/200 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q       R    ++ ++G++N GKS++ N LAK +V
Sbjct: 180 EMDRRIILNRMSLLKERLAEIDKQKSTQRKNRGRMIRVALVGYTNVGKSTMMNLLAKSEV 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + ++     +SDT G          +  K T  EV  ADL++ 
Sbjct: 240 -FAENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLVH 298

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           + +I+    +++I                 I I  K D Y TY E+    ++  T E L 
Sbjct: 299 VVDISHPGFEEQIEVVNKTLADIGGGGKPMILIFNKIDAY-TYVEKAPDDLTPKTKENL- 356

Query: 353 ELINKIKSILSNKFKKLPFS 372
                ++ ++     K+  +
Sbjct: 357 ----TLEELMKTWMAKMEDN 372


>gi|258623500|ref|ZP_05718502.1| GTP-binding protein HflX [Vibrio mimicus VM573]
 gi|262163593|ref|ZP_06031336.1| GTP-binding protein HflX [Vibrio mimicus VM223]
 gi|262172554|ref|ZP_06040232.1| GTP-binding protein HflX [Vibrio mimicus MB-451]
 gi|258584212|gb|EEW08959.1| GTP-binding protein HflX [Vibrio mimicus VM573]
 gi|261893630|gb|EEY39616.1| GTP-binding protein HflX [Vibrio mimicus MB-451]
 gi|262027960|gb|EEY46622.1| GTP-binding protein HflX [Vibrio mimicus VM223]
          Length = 429

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 92/270 (34%), Gaps = 33/270 (12%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + +  
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRE 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   +     Q + G   RN      I ++G++NAGKS+LFN + +  V    D  
Sbjct: 170 RIKAILRRLEKVAKQREQGRRARNRAEIPTISLVGYTNAGKSTLFNRITEAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     +DL       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKIDLVDVGPAVLADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASD 288

Query: 311 K-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTG 348
                         +EI     +  + +  K D         +           IS+  G
Sbjct: 289 DRFRENIQAVETVLQEID-AHEVPTLLVMNKIDSLEEQAPRIERDDEGIPRVVWISAMQG 347

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKR 378
            G+E L   +   L+++  +    IP   +
Sbjct: 348 SGIELLFQALSERLASQVVEHHLRIPPRHQ 377


>gi|240102327|ref|YP_002958635.1| GTP-binding protein hflx (hflX) [Thermococcus gammatolerans EJ3]
 gi|239909880|gb|ACS32771.1| GTP-binding protein hflx (hflX) [Thermococcus gammatolerans EJ3]
          Length = 431

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 79/219 (36%), Gaps = 33/219 (15%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL---GHSNAGKSSLFNALAKKDVAI 246
           K +   +  ++ ++    +   +    R     +++   G++NAGKS+L NALA + V  
Sbjct: 156 KHIRYRMGKIRKELERVRADRGVKRKRREELGFLLIALAGYTNAGKSTLLNALAGESV-E 214

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             D   TT D  T    L    V ++DT G  +       E    T  E+  AD++LL+ 
Sbjct: 215 ARDQMFTTLDTTTRRFKLGRKRVLLTDTVGFIDNLPPFIVEAFHSTLEEIVKADIVLLVI 274

Query: 307 EINSKKEISFPK--------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           + +        K              +   + +  K DL                 E +E
Sbjct: 275 DASEPWAEVRRKLLASIEILRELKALDKPMVIVLNKIDLT--------------NDEDVE 320

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
           E   +I  I       +   + +  + L  L +  R LE
Sbjct: 321 EKRRRIMEIADELAPSVRAVVKTSAK-LGILEELKRALE 358


>gi|148989044|ref|ZP_01820444.1| GTP-binding protein HflX [Streptococcus pneumoniae SP6-BS73]
 gi|148992218|ref|ZP_01821941.1| ribonuclease Z [Streptococcus pneumoniae SP9-BS68]
 gi|168488353|ref|ZP_02712552.1| GTP-binding protein HflX [Streptococcus pneumoniae SP195]
 gi|147925541|gb|EDK76618.1| GTP-binding protein HflX [Streptococcus pneumoniae SP6-BS73]
 gi|147928844|gb|EDK79856.1| ribonuclease Z [Streptococcus pneumoniae SP9-BS68]
 gi|183572930|gb|EDT93458.1| GTP-binding protein HflX [Streptococcus pneumoniae SP195]
 gi|332074477|gb|EGI84953.1| GTP-binding proten HflX [Streptococcus pneumoniae GA17570]
 gi|332075966|gb|EGI86432.1| GTP-binding proten HflX [Streptococcus pneumoniae GA41301]
          Length = 412

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 102/266 (38%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNILTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------- 309
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + +       
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 310 SKKEISFPKNIDFIFI-----GTKSDLYSTYTE-EYDHLISSFTGEGLEE-----LINKI 358
            K  +S  K++D   I       K+DL   +T  +  + + S   E   E     L++KI
Sbjct: 296 EKTVLSIMKDLDMEDIPHLTLYNKADLVEDFTPTQTPYTLISAKSEDSRENLQALLLDKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 356 KEIFEAFTLRVPFSKSYKIHDLESVA 381


>gi|15900573|ref|NP_345177.1| GTP-binding protein HflX [Streptococcus pneumoniae TIGR4]
 gi|15902633|ref|NP_358183.1| GTP-binding protein HflX [Streptococcus pneumoniae R6]
 gi|111658673|ref|ZP_01409316.1| hypothetical protein SpneT_02000179 [Streptococcus pneumoniae
           TIGR4]
 gi|116517076|ref|YP_816083.1| GTP-binding protein HflX [Streptococcus pneumoniae D39]
 gi|148985255|ref|ZP_01818478.1| GTP-binding protein HflX [Streptococcus pneumoniae SP3-BS71]
 gi|148997246|ref|ZP_01824900.1| ribonuclease Z [Streptococcus pneumoniae SP11-BS70]
 gi|149010705|ref|ZP_01832076.1| ribonuclease Z [Streptococcus pneumoniae SP19-BS75]
 gi|168482900|ref|ZP_02707852.1| GTP-binding proten HflX [Streptococcus pneumoniae CDC1873-00]
 gi|168487236|ref|ZP_02711744.1| GTP-binding proten HflX [Streptococcus pneumoniae CDC1087-00]
 gi|168492253|ref|ZP_02716396.1| GTP-binding proten HflX [Streptococcus pneumoniae CDC0288-04]
 gi|168492830|ref|ZP_02716973.1| GTP-binding proten HflX [Streptococcus pneumoniae CDC3059-06]
 gi|168575342|ref|ZP_02721278.1| GTP-binding proten HflX [Streptococcus pneumoniae MLV-016]
 gi|169833818|ref|YP_001694145.1| GTP-binding proten HflX [Streptococcus pneumoniae Hungary19A-6]
 gi|182683599|ref|YP_001835346.1| GTP-binding protein HflX [Streptococcus pneumoniae CGSP14]
 gi|221231488|ref|YP_002510640.1| GTPase [Streptococcus pneumoniae ATCC 700669]
 gi|225854198|ref|YP_002735710.1| GTP-binding proten HflX [Streptococcus pneumoniae JJA]
 gi|225856365|ref|YP_002737876.1| GTP-binding proten HflX [Streptococcus pneumoniae P1031]
 gi|225860663|ref|YP_002742172.1| GTP-binding proten HflX [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229816|ref|ZP_06963497.1| GTP-binding proten HflX [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254804|ref|ZP_06978390.1| GTP-binding proten HflX [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502466|ref|YP_003724406.1| HflX subfamily GTP-binding protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303254746|ref|ZP_07340847.1| putative GTPase [Streptococcus pneumoniae BS455]
 gi|303259943|ref|ZP_07345917.1| GTP-binding protein HflX [Streptococcus pneumoniae SP-BS293]
 gi|303261349|ref|ZP_07347297.1| GTP-binding protein HflX [Streptococcus pneumoniae SP14-BS292]
 gi|303264015|ref|ZP_07349936.1| GTP-binding protein HflX [Streptococcus pneumoniae BS397]
 gi|303266329|ref|ZP_07352219.1| GTP-binding protein HflX [Streptococcus pneumoniae BS457]
 gi|303268796|ref|ZP_07354584.1| GTP-binding protein HflX [Streptococcus pneumoniae BS458]
 gi|307067290|ref|YP_003876256.1| GTPase [Streptococcus pneumoniae AP200]
 gi|14972147|gb|AAK74817.1| GTP-binding protein HflX [Streptococcus pneumoniae TIGR4]
 gi|15458170|gb|AAK99393.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116077652|gb|ABJ55372.1| GTP-binding protein HflX [Streptococcus pneumoniae D39]
 gi|147756946|gb|EDK63986.1| ribonuclease Z [Streptococcus pneumoniae SP11-BS70]
 gi|147765186|gb|EDK72115.1| ribonuclease Z [Streptococcus pneumoniae SP19-BS75]
 gi|147922453|gb|EDK73572.1| GTP-binding protein HflX [Streptococcus pneumoniae SP3-BS71]
 gi|168996320|gb|ACA36932.1| GTP-binding proten HflX [Streptococcus pneumoniae Hungary19A-6]
 gi|172043841|gb|EDT51887.1| GTP-binding proten HflX [Streptococcus pneumoniae CDC1873-00]
 gi|182628933|gb|ACB89881.1| GTP-binding protein HflX [Streptococcus pneumoniae CGSP14]
 gi|183569866|gb|EDT90394.1| GTP-binding proten HflX [Streptococcus pneumoniae CDC1087-00]
 gi|183573525|gb|EDT94053.1| GTP-binding proten HflX [Streptococcus pneumoniae CDC0288-04]
 gi|183576889|gb|EDT97417.1| GTP-binding proten HflX [Streptococcus pneumoniae CDC3059-06]
 gi|183578622|gb|EDT99150.1| GTP-binding proten HflX [Streptococcus pneumoniae MLV-016]
 gi|220673948|emb|CAR68457.1| putative GTPase [Streptococcus pneumoniae ATCC 700669]
 gi|225723310|gb|ACO19163.1| GTP-binding proten HflX [Streptococcus pneumoniae JJA]
 gi|225724309|gb|ACO20161.1| GTP-binding proten HflX [Streptococcus pneumoniae P1031]
 gi|225727118|gb|ACO22969.1| GTP-binding proten HflX [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238061|gb|ADI69192.1| HflX subfamily GTP-binding protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301793853|emb|CBW36246.1| putative GTPase [Streptococcus pneumoniae INV104]
 gi|301799710|emb|CBW32275.1| putative GTPase [Streptococcus pneumoniae OXC141]
 gi|301801535|emb|CBW34227.1| putative GTPase [Streptococcus pneumoniae INV200]
 gi|302598286|gb|EFL65331.1| putative GTPase [Streptococcus pneumoniae BS455]
 gi|302637483|gb|EFL67970.1| GTP-binding protein HflX [Streptococcus pneumoniae SP14-BS292]
 gi|302638862|gb|EFL69323.1| GTP-binding protein HflX [Streptococcus pneumoniae SP-BS293]
 gi|302641661|gb|EFL72020.1| GTP-binding protein HflX [Streptococcus pneumoniae BS458]
 gi|302644140|gb|EFL74397.1| GTP-binding protein HflX [Streptococcus pneumoniae BS457]
 gi|302646420|gb|EFL76646.1| GTP-binding protein HflX [Streptococcus pneumoniae BS397]
 gi|306408827|gb|ADM84254.1| GTPase [Streptococcus pneumoniae AP200]
 gi|327390402|gb|EGE88743.1| GTP-binding proten HflX [Streptococcus pneumoniae GA04375]
 gi|332204689|gb|EGJ18754.1| GTP-binding proten HflX [Streptococcus pneumoniae GA47901]
          Length = 412

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 102/266 (38%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNILTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------- 309
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + +       
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 310 SKKEISFPKNIDFIFI-----GTKSDLYSTYTE-EYDHLISSFTGEGLEE-----LINKI 358
            K  +S  K++D   I       K+DL   +T  +  + + S   E   E     L++KI
Sbjct: 296 EKTVLSIMKDLDMEDIPHLTLYNKADLVEDFTPTQTPYTLISAKSEDSRENLQALLLDKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 356 KEIFEAFTLRVPFSKSYKIHDLESVA 381


>gi|110678687|ref|YP_681694.1| GTP-binding protein Era [Roseobacter denitrificans OCh 114]
 gi|109454803|gb|ABG31008.1| GTP-binding protein Era [Roseobacter denitrificans OCh 114]
          Length = 302

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 69/180 (38%), Gaps = 20/180 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQIVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           + +    +++  +   +    +AD+++LL E +           +      +        
Sbjct: 63  LFQPRRRLDRAMVAAAWSGAADADVVVLLVEAHRGVTEGVERVLEGLAEVGQGRMVALAI 122

Query: 327 TKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            K D         L     E YD + +          ++ +++ L+ K  + P+  P  +
Sbjct: 123 NKIDRVQAEALLALSKDLNERYDFVETFMISAERGHGVDTLRAWLAGKVPEGPWLYPEDQ 182


>gi|154484696|ref|ZP_02027144.1| hypothetical protein EUBVEN_02413 [Eubacterium ventriosum ATCC
           27560]
 gi|149734544|gb|EDM50461.1| hypothetical protein EUBVEN_02413 [Eubacterium ventriosum ATCC
           27560]
          Length = 410

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 81/213 (38%), Gaps = 22/213 (10%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +V     ++ ++ +     D+ SH    +          I I+G++NAGKS+L N L   
Sbjct: 161 EVDRRLIRDRISQLKSQVEDLESHRQVTRARRQENPVPVIAIVGYTNAGKSTLLNTLTDA 220

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
              +  D    T D  T +  L +G  V ++DT G          +  + T  E + +D+
Sbjct: 221 -RVLEEDKLFATLDPTTRNYKLPDGQEVLLTDTVGFIRKLPHHLIDAFRSTLEEAKYSDI 279

Query: 302 ILLLKEI-------------NSKKEISFPKNIDFIFIGTKSD------LYSTYTEEYDHL 342
           I+ + +              ++ K +   K+   I +  K D      +   +  +Y   
Sbjct: 280 IIHVVDSSNPVMDKNVQAVYDTLKNLEV-KDKIIITVFNKIDKLEEKPIMKDFNADYTVE 338

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            +   G GL+EL   I+  L +    +    P 
Sbjct: 339 TAIKKGIGLDELNEIIEKALKSMRIHIEKLFPY 371


>gi|257870017|ref|ZP_05649670.1| GTP-binding protein [Enterococcus gallinarum EG2]
 gi|257804181|gb|EEV33003.1| GTP-binding protein [Enterococcus gallinarum EG2]
          Length = 412

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 102/261 (39%), Gaps = 20/261 (7%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L  L GQ  + ++ +   I        + +      +  +
Sbjct: 110 MRARSKEGKLQVELAQLDYLLPRLIGQGKN-MSRLGGGIGTRGPGETKLETDRRHIRNRI 168

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I     ++++H  + +        ++I ++G++NAGKS++ N L   D      +   
Sbjct: 169 TIIKRELKEVAAHRDRTRQKRRDSQVFQIGLIGYTNAGKSTILNLLTSADTYEQDQLFA- 227

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D LT    L EG  V ++DT G  +       +    T  E +N DL+L + +  S  
Sbjct: 228 TLDPLTKRWRLPEGLEVTVTDTVGFIQELPTQLIDAFHSTLEESQNMDLLLHVVDAGSHD 287

Query: 313 EISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFTGEGLEELIN 356
                K             +  + I  K+D         T   + LIS+ + +G E+LI 
Sbjct: 288 RQQQEKTVLALMEELSLTQVPVLTIYNKADRIDPEQFVPTLFPNVLISAKSSKGKEQLIQ 347

Query: 357 KIKSILSNKFKKLPFSIPSHK 377
            IK  L    +     + +++
Sbjct: 348 AIKMELMQIMQPYQTVLAANE 368


>gi|228902206|ref|ZP_04066368.1| hypothetical protein bthur0014_33850 [Bacillus thuringiensis IBL
           4222]
 gi|228966599|ref|ZP_04127650.1| hypothetical protein bthur0004_34080 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228793121|gb|EEM40673.1| hypothetical protein bthur0004_34080 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228857441|gb|EEN01939.1| hypothetical protein bthur0014_33850 [Bacillus thuringiensis IBL
           4222]
          Length = 424

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 97/280 (34%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + +     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAN-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      I   +            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHERTVKRLLSELEINHIPIITLYNKK 318

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  + +IK  +  K KK 
Sbjct: 319 DELHQNFIPFPKSDFLMTSAFEESDLLRIKEAIEMKMKKE 358


>gi|218898801|ref|YP_002447212.1| GTP-binding protein [Bacillus cereus G9842]
 gi|218543983|gb|ACK96377.1| GTP-binding protein [Bacillus cereus G9842]
          Length = 425

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 97/280 (34%), Gaps = 31/280 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 81  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 140

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 141 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 200

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + +     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 201 SLIGYTNAGKSTLFNRLTEAN-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 259

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      I   +            +I  I +  K 
Sbjct: 260 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHERTVKRLLSELEINHIPIITLYNKK 319

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
           D        +       T    E  + +IK  +  K KK 
Sbjct: 320 DELHQNFIPFPKSDFLMTSAFEESDLLRIKEAIEMKMKKE 359


>gi|242398493|ref|YP_002993917.1| FeoB ferrous iron transport protein B - like protein [Thermococcus
           sibiricus MM 739]
 gi|242264886|gb|ACS89568.1| FeoB ferrous iron transport protein B - like protein [Thermococcus
           sibiricus MM 739]
          Length = 681

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 21/181 (11%)

Query: 217 RNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + G K++ + G+ N GK+++FNAL       V + PG T +     L        + D  
Sbjct: 15  KQGLKVIALAGNPNVGKTTIFNALTGL-RQHVGNWPGVTVEKKEGILKYHNKEFLVVDLP 73

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTK 328
           G          E I R FL   NA++++ + + +S         EI      + I    K
Sbjct: 74  GTYSLTANSIDELIARNFLLGGNANVVVDIVDSSSLMRNLFLTMEIFEMGIKNVIIALNK 133

Query: 329 SDLYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            D+       +D              +++  GEG+EEL   I  +   K    P +    
Sbjct: 134 IDIAKKRGISFDVKKMEKVIGVPVIPMNAKNGEGIEELKAMISEMAEGKATTNPITPIYD 193

Query: 377 K 377
           +
Sbjct: 194 E 194


>gi|148260756|ref|YP_001234883.1| GTP-binding protein, HSR1-related [Acidiphilium cryptum JF-5]
 gi|146402437|gb|ABQ30964.1| GTP-binding protein HflX [Acidiphilium cryptum JF-5]
          Length = 435

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 88/260 (33%), Gaps = 47/260 (18%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + I  L+ ++        L    RN      + ++G++NAGKS+LFNAL   
Sbjct: 168 EADRRLITDRIARLRRELDEVRRTRALHRAARNRVPYPVVALVGYTNAGKSTLFNALTGA 227

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V     +  T    + + +   G    +SDT G             + T  EV  AD+I
Sbjct: 228 TVHAQDQLFATLDPTMRLIVLPSGRQAILSDTVGFISDLPTELVAAFRATLEEVAAADII 287

Query: 303 LLLKEINSKKEISFPKNI-------------------DFIFIGTKSDLYSTYTEEYD--- 340
           L +++       +   ++                     I +  K DL      +     
Sbjct: 288 LHVRDCAHPDSAAQRADVVSVLDGMARSGMIDEGWSSRCIEVMNKIDLLDPAARDLPGAS 347

Query: 341 -HLISSFTGEGLEELINKIKSILSNKFK--------KLPFSIPSHKRHLYHLSQTVRYLE 391
              +S+ +GE L+ L   I + L+   +             +    RH   +S+      
Sbjct: 348 AIAVSALSGENLDTLRATIDARLAGAMQVATYWLAPADGAGLAWLYRHGEVISRA----- 402

Query: 392 MASLNEKDCGLDIIAENLRL 411
                    G D IA  +RL
Sbjct: 403 --------DGEDAIAIEVRL 414


>gi|218661703|ref|ZP_03517633.1| GTP-binding protein [Rhizobium etli IE4771]
          Length = 285

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 31/225 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + I+ L+ ++   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 10  EADRRLLQDRIIKLERELEQVVRTRQLHRAKRRKVPHPIVALVGYTNAGKSTLFNRITGA 69

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 70  GV-LAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISDLPTHLVAAFRATLEEVLEADL 128

Query: 302 ILLLKEINSKKEISFPKNIDFIF----------------IGTKSDLYSTYTEEY------ 339
           IL +++++     +   ++  I                 +  K D       +       
Sbjct: 129 ILHVRDMSDDDNQAQSSDVMRILGDLGIDEAEAEKRLIEVWNKIDRLEPEVHDAMVQKAS 188

Query: 340 ----DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                  +S+ +GEG++ L+++I   LS    +    +P  K  L
Sbjct: 189 GASNVVAVSAVSGEGVDSLMDEISRRLSGVMTETTIRLPVDKLAL 233


>gi|326334848|ref|ZP_08201049.1| ferrous iron transport protein B [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692885|gb|EGD34823.1| ferrous iron transport protein B [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 723

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 22/191 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y I + G+ N GKS++FNAL         + PG T               KI D  G   
Sbjct: 28  YTIALAGNPNTGKSTVFNALTGL-RQHTGNWPGKTVTRAEGSFLFHDLRYKIIDLPGTYS 86

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
                E E + R F+     D+ +++ +  S+ E +    +  + I  K+ L     +E 
Sbjct: 87  LLSTSEDEEVARDFILFGKPDVTVIVVDA-SRLERNLSLTLQILEITDKAVLCLNLMDEA 145

Query: 340 DHLISSF-------------------TGEGLEELINKIKSILSNKFKKLPFSIPS-HKRH 379
                S                    T EG+++L+  I+ ++S KF+    +     K+H
Sbjct: 146 SRHHISIDTRTLSRDLGIPVVATSARTREGIDDLLLAIEEVVSGKFQTKKKTFIELPKQH 205

Query: 380 LYHLSQTVRYL 390
           +  ++Q  + L
Sbjct: 206 IEAIAQLEQIL 216


>gi|157156541|ref|YP_001464348.1| putative GTPase [Escherichia coli E24377A]
 gi|157078571|gb|ABV18279.1| putative GTPase [Escherichia coli E24377A]
          Length = 290

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMIITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K +++        P 
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREKTEAVFRLFRPVHPV 195

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
              S       L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 196 VAVSACTGWE-LDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|301103290|ref|XP_002900731.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262101486|gb|EEY59538.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 315

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 44/247 (17%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ-------- 209
           Y + I +L  + + +       E E  +  + +E ++  L    ++   +          
Sbjct: 70  YEKHIQRLRKVYASLHNTGKHYERECQELRTKQEAVDCGLRCVEELKKIVDDNAGTLREV 129

Query: 210 GKLGEIIR-------NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
             + +++R       +      +G  N GKSSL  AL+      V + P TTR +    +
Sbjct: 130 ANMAKVLRGLPHVDLDKPIFAFVGAPNVGKSSLVRALSTAS-PEVANYPFTTRGITMGHI 188

Query: 263 DLEGYLVKISDTAGI----RETDDIVEK---EGIKRTFLEVE------------NADLIL 303
             EG   +I+DT G+     ET + +EK     +++T   +              AD +L
Sbjct: 189 FEEGISYQIADTPGLIFRSDETRNAIEKLAIAMMEKTQASIGFVFDPTGSSGTPTADQVL 248

Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSD--------LYSTYTEEYDHLISSFTGEGLEELI 355
           L  E+  +   + P+++    I +KSD        L           +S+ T EGL EL 
Sbjct: 249 LRDELRHRVLKARPEHMWIDII-SKSDQPSDDLASLKDRLGPSPFFSVSAQTNEGLVELG 307

Query: 356 NKIKSIL 362
           ++I+ +L
Sbjct: 308 DEIRRLL 314


>gi|223986781|ref|ZP_03636764.1| hypothetical protein HOLDEFILI_04087 [Holdemania filiformis DSM
           12042]
 gi|223961245|gb|EEF65774.1| hypothetical protein HOLDEFILI_04087 [Holdemania filiformis DSM
           12042]
          Length = 382

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 24/207 (11%)

Query: 188 SSKEVLNDILFLKNDISSH-ISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDV 244
           S + +   I  ++ ++    + Q       R     ++ ++G+SNAGKSSL NAL     
Sbjct: 159 SRRTIEKQIRNIRLELDQLKLQQAVQSHRRRQSGLPRVCLIGYSNAGKSSLMNALL-SLR 217

Query: 245 AIV-------TDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           +I         D    T D  T  + L G   + +SDT G          +  + T  E+
Sbjct: 218 SISPAKQVASADQLFATLDSATRRIKLAGRAEMLLSDTVGFVRDLPDFLLDAFESTLQEI 277

Query: 297 ENADLILLLKEINSKK-----EI-------SFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
           + ADL++ + + +  +     EI           +ID + I  K+D    +  +   L+S
Sbjct: 278 QEADLLMEVIDASDPQWELQHEIVMRTLHRLHAAHIDRMRIYNKADQVPQWDRKDGLLLS 337

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPF 371
             TG+GL+ELI  + S L+   +  P 
Sbjct: 338 CLTGQGLQELIAGLISRLNLTDRAFPE 364


>gi|192291246|ref|YP_001991851.1| GTP-binding proten HflX [Rhodopseudomonas palustris TIE-1]
 gi|192284995|gb|ACF01376.1| GTP-binding proten HflX [Rhodopseudomonas palustris TIE-1]
          Length = 455

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 104/270 (38%), Gaps = 36/270 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E   ++ +  ++ + S L   W   L   R          E +       + +  
Sbjct: 138 RAKTREGTLQVELAHLNYQRSRLVRSWTH-LERQRGGFGFMGGPGETQI--EADRRLIGE 194

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  L+ ++    +  +L    R       + ++G++NAGKS+LFN L + DV    D+ 
Sbjct: 195 RITKLEAELKKVQATRRLHRAGRQRVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADML 253

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L  G    +SDT G             + T  EV  ADLIL +++I+ 
Sbjct: 254 FATLDPTLRAIQLPHGGKAMLSDTVGFISNLPTQLVAAFRATLEEVLEADLILHVRDISH 313

Query: 311 KKEISFPKNID--------------FIFIGTKSDLYSTYTEE----------YDHLI--- 343
           +   +   ++D               + +  K D +     +           DH     
Sbjct: 314 EDAEAQQHDVDNVLRQLGVDAASGRIVEVWNKIDRFEPEQRDELKNIAARRPEDHPCLLV 373

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           S+ +GEG++EL+  I+  L+     L  SI
Sbjct: 374 SAVSGEGVDELLLSIEQRLAATRTVLDLSI 403


>gi|189346285|ref|YP_001942814.1| ferrous iron transport protein B [Chlorobium limicola DSM 245]
 gi|189340432|gb|ACD89835.1| ferrous iron transport protein B [Chlorobium limicola DSM 245]
          Length = 786

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 19/159 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           + + ++G+ N GK++LFNAL   +   V + PG T D  T     +G   ++ D  GI  
Sbjct: 21  FVVAVVGNPNCGKTTLFNALTGLNQ-RVGNWPGVTVDKKTGSFMRDGVRFELVDLPGIYS 79

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK------EISFPKNIDFIFIGTKSDLYS 333
              + + E I R ++    ADLI+ + + ++              ++  +      D+ +
Sbjct: 80  LSALSQDEEIARDYILSGEADLIVNIVDASNPDRNLYLTSRLLEMHVPVVVALNMIDVAA 139

Query: 334 TYTEEYDHLI------------SSFTGEGLEELINKIKS 360
               E D                +  G+G++EL + I +
Sbjct: 140 EKGIETDVAELARRLGTPVVSLVASRGDGVDELKSAIAT 178


>gi|24114254|ref|NP_708764.1| hypothetical protein SF2990 [Shigella flexneri 2a str. 301]
 gi|12643221|gb|AAK00473.1| unknown [Shigella flexneri 2a]
 gi|24053407|gb|AAN44471.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
          Length = 290

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 103/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D   + E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPEVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILQCGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQEQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|323693176|ref|ZP_08107394.1| ferrous iron transporter B [Clostridium symbiosum WAL-14673]
 gi|323502659|gb|EGB18503.1| ferrous iron transporter B [Clostridium symbiosum WAL-14673]
          Length = 689

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 84/236 (35%), Gaps = 41/236 (17%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
            + + +   G+       +  +G+ N GK++LFNA     +  V + PG T + +  +  
Sbjct: 21  EALVMKADNGQ-----ITVGFVGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERVEGETS 74

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFP 317
            +G  +K+ D  GI        +E + R  +E    D+I+ + + +S +           
Sbjct: 75  YKGRPIKVIDLPGIYSLTSYTIEERVTRKCIEDNEVDVIVNVVDASSLERNLYLTLQLLE 134

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLI-------------SSFTGEGLEELINKI------ 358
                I      D+      E D                S+    GL+ L++ +      
Sbjct: 135 LKKPVILALNMMDIVEDRGMEIDLHRLPEMLGHIPVVPVSARKRTGLDVLMHAVVHHYEE 194

Query: 359 ---------KSILSNKFKKLPFSIPSHKRHLYHLS-QTVRYLEMASLNEKDCGLDI 404
                       + ++  K+   + +H   L ++    ++ +E      KD  +D+
Sbjct: 195 EPQGVVVRYSDSIEDRIAKIEVVLKAHFGQLDNMRWHAIKMMEYDEEVCKDHPVDL 250


>gi|76800944|ref|YP_325952.1| GTP-binding protein [Natronomonas pharaonis DSM 2160]
 gi|76556809|emb|CAI48383.1| GTP-binding protein [Natronomonas pharaonis DSM 2160]
          Length = 327

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 83/241 (34%), Gaps = 32/241 (13%)

Query: 144 RLSMEGMSGELSSLYGQWI----DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
             +           +G+      D    +R    A L    E+   +  +     + L  
Sbjct: 95  MWAGRQADKIKDEYHGRIRNSDTDTARKLRKQAFARLADITEQVEDDLLAIGTAREALKT 154

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             DI +            +   IV+ G+ N GKSS  N +           P TT ++  
Sbjct: 155 LPDIRA------------DEPAIVVAGYPNVGKSSFVNTVTNA-RNETAAYPFTTTEINV 201

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN-ADLILLLKEINSK------- 311
             ++      ++ DT G+ +           +    + + AD +L + + + +       
Sbjct: 202 GHVEDNHVRYQLIDTPGLLDRPSEDRNPIESQAVSALTHLADAVLFVLDASGECGYPLDS 261

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                 +I    ++  I +  K+D   +   E DH +S  TGE ++E+++     +  + 
Sbjct: 262 QRDLLDDIESTFDVPVIVVCNKAD--RSTDTEADHYMSVETGENVDEVLDAAIDAVDYEL 319

Query: 367 K 367
           +
Sbjct: 320 E 320


>gi|323441087|gb|EGA98794.1| GTP-binding protein [Staphylococcus aureus O11]
 gi|323443956|gb|EGB01567.1| GTP-binding protein [Staphylococcus aureus O46]
          Length = 412

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 101/265 (38%), Gaps = 25/265 (9%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 180 NEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 298

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEEL-- 354
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L  
Sbjct: 299 YRTQYDTVNDLIKQLDMNHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVK 358

Query: 355 ---INKIKSILSNKFKKLPFSIPSH 376
              I++IK  L+   + +  +    
Sbjct: 359 TLFIDEIKRQLTYYDEAIATNNADR 383


>gi|315617586|gb|EFU98192.1| GTP-binding proten HflX [Escherichia coli 3431]
          Length = 426

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLEKVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|226312943|ref|YP_002772837.1| GTP-binding protein HflX [Brevibacillus brevis NBRC 100599]
 gi|226095891|dbj|BAH44333.1| probable GTP-binding protein HflX [Brevibacillus brevis NBRC
           100599]
          Length = 430

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 90/216 (41%), Gaps = 21/216 (9%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKKDV 244
             + +   I  LK  +   +   +L    R   N ++I ++G++NAGKS++ N L   + 
Sbjct: 166 DRRHIRKRISELKQQLEDTVRTRQLHRERRKKNNVFQIALVGYTNAGKSTILNKLTNAN- 224

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +  D    T D  T  L+L  G  V ++DT G  +          + T   V+ ADLIL
Sbjct: 225 TLQEDKLFATLDPTTRQLELPSGLDVLLTDTVGFIQDLPTSLVAAFRSTLEGVKEADLIL 284

Query: 304 LLKE------------INSKKEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSFT 347
            + +            ++        + I  + +  K+D+ +  +     +   LIS+  
Sbjct: 285 HVVDSHHPDFQVHMEVVDKILRELKAEEIPHLVVFNKADMLTEGSYLPRADESILISAMR 344

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
            + L++L+ +I+S     F  +   +P  +  +  L
Sbjct: 345 EDDLKQLLTRIESFALQSFNAMKLRVPVERGDILSL 380


>gi|302874975|ref|YP_003843608.1| GTP-binding proten HflX [Clostridium cellulovorans 743B]
 gi|307690408|ref|ZP_07632854.1| GTP-binding proten HflX [Clostridium cellulovorans 743B]
 gi|302577832|gb|ADL51844.1| GTP-binding proten HflX [Clostridium cellulovorans 743B]
          Length = 599

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 100/263 (38%), Gaps = 42/263 (15%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA-- 240
           ++     K+ ++D+      I  + +  +      N  KI ++G++NAGKS+L NALA  
Sbjct: 329 EIDRRRIKDDIHDLRMELEKIRKNRAVQREKRSKSNVPKISLVGYTNAGKSTLRNALAEY 388

Query: 241 -------KKDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGIRETDDIVEKEGIKRT 292
                  +KD     D+   T DV T  + L    V  ++DT G          E  K T
Sbjct: 389 ALVEQGKQKDKVFEADMLFATLDVTTRAILLRDKRVAALTDTVGFIRKLSHDLVEAFKST 448

Query: 293 FLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSD---------L 331
             EV  ADL+L + + +S       +            +   I +  K D         +
Sbjct: 449 LEEVIFADLLLHVVDSSSDIIFEQIEATHAVLKELNAFDKPIILVLNKVDKENAHTVAEI 508

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
              Y E     IS+  G   + L+  I   L N  KK+ F IP     +        YL 
Sbjct: 509 KEKYKEFQVIPISAKNGTNFDGLMEMIVEFLPNPMKKVEFLIPYSDGDVGA------YLH 562

Query: 392 MASLNEKDCGLD-----IIAENL 409
             ++ E++  LD     I   ++
Sbjct: 563 RNAIIEEEDYLDNGTKVIATVDI 585


>gi|221060018|ref|XP_002260654.1| GTPase [Plasmodium knowlesi strain H]
 gi|193810728|emb|CAQ42626.1| GTPase, putative [Plasmodium knowlesi strain H]
          Length = 499

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
            KI ++G  NAGKSSL N++  K ++ V+    TTR  +      +   +   D+ GI  
Sbjct: 105 LKIALIGAPNAGKSSLLNSILNKTISAVSPKINTTRQDIKGIYTKDNVQLIFIDSPGIVP 164

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKE 307
                   KE +   +   E ADLIL + +
Sbjct: 165 SHKKKKFCKELVSYAWKGYEEADLILFVAD 194


>gi|193214735|ref|YP_001995934.1| small GTP-binding protein [Chloroherpeton thalassium ATCC 35110]
 gi|193088212|gb|ACF13487.1| small GTP-binding protein [Chloroherpeton thalassium ATCC 35110]
          Length = 383

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 23/213 (10%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
           K  I   ++Q +  E      K+ + G +  GKSSL NAL  +D+  ++DI   TR    
Sbjct: 45  KTKIEERLNQVRNYE-----PKVGVFGKTGVGKSSLCNALFGQDICEISDIKACTRKPQE 99

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK- 318
           I L + G  +K+ D  G+ E+ +  +KE  +     +   DLI  + + + +   S  + 
Sbjct: 100 ILLSIGGRGLKLLDVPGVGESSE-RDKEYEELYEKLLPELDLIFWVFKADDRAGSSDERF 158

Query: 319 -----------NIDFIFIGTKSDLYSTYTE--EYDHLISSFTGEGLEELINKIKSILSNK 365
                         F+ +  + D    + E  E +    +     ++E    I       
Sbjct: 159 YKRLIRPYVDAGKPFLAVINQVDKIEPFREWNEEERRPGAKQSANIDEKRKHIAGFFDLP 218

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
             K+   +P      Y+L + V  +  A   E+
Sbjct: 219 LNKV---LPISANEKYNLDKLVDSIIHALPKEQ 248


>gi|21282918|ref|NP_646006.1| hypothetical protein MW1189 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486145|ref|YP_043366.1| hypothetical protein SAS1239 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208047|ref|ZP_06924478.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912130|ref|ZP_07129573.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|21204357|dbj|BAB95054.1| MW1189 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244588|emb|CAG43017.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887290|gb|EFH26192.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886376|gb|EFK81578.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 412

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 99/261 (37%), Gaps = 21/261 (8%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 180 NEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 298

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELIN 356
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L+ 
Sbjct: 299 YRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNCPASDLPNVFVSSKNDGDKLLVK 358

Query: 357 KI-KSILSNKFKKLPFSIPSH 376
            +    +  +      +I ++
Sbjct: 359 TLFIDEIKRQLTYYDETIATN 379


>gi|322380637|ref|ZP_08054789.1| GTP-binding protein Era [Helicobacter suis HS5]
 gi|321146959|gb|EFX41707.1| GTP-binding protein Era [Helicobacter suis HS5]
          Length = 311

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 25/167 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGYLVKISDTAG 276
           I ++G  NAGKS+L NAL  + + +++     TR +L   +     D+E   +   DT G
Sbjct: 22  IALIGRPNAGKSTLINALVYERLCLISHKANATRKILKAIVPYMQGDIE-CQMVFLDTPG 80

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSD- 330
           I +   ++ +  IK+    +E+ DL + L  I+   E     ++   N   I    K+D 
Sbjct: 81  ICKPTKLLNQAMIKQIRHALESCDLAIFLASIHDSPEKYQEFLNLTPNKPHILALNKTDT 140

Query: 331 -----------LYSTYTEEYD--HLISSFTGEGLEELINKIKSILSN 364
                       Y  Y+  +     +S+     LE L+ ++  +L  
Sbjct: 141 ATPTKILAQIKAYQVYSAHFGALIPLSAAKRHHLEILLEEVAKLLPE 187


>gi|227873761|ref|ZP_03991990.1| small GTP-binding protein [Oribacterium sinus F0268]
 gi|227840377|gb|EEJ50778.1| small GTP-binding protein [Oribacterium sinus F0268]
          Length = 438

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           +     GE       I   G  NAGKSS FNA+A + +++ ++  GTT D +   +++  
Sbjct: 3   LQDTPQGER----IHIAFFGRRNAGKSSFFNAIAGQKLSLTSETLGTTTDPVRKSMEILP 58

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
              V + DT G  +  ++     ++RT   +   D+ LL      
Sbjct: 59  LGPVLLIDTPGFDDEGELGSMR-VERTKEVLRETDIALLFLPAKD 102


>gi|332185025|ref|ZP_08386774.1| GTP-binding protein HflX [Sphingomonas sp. S17]
 gi|332014749|gb|EGI56805.1| GTP-binding protein HflX [Sphingomonas sp. S17]
          Length = 430

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 95/260 (36%), Gaps = 31/260 (11%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E + ++ +  +  +   L   W   L   R          E +       + + + 
Sbjct: 124 AATAEGRLQVELAHLDYQAGRLVRSWTH-LERQRGGFGFLGGPGETQI--EADRRMIRDR 180

Query: 196 ILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  L+ ++        L    R       I ++G++NAGKS+LFN L    V    D+  
Sbjct: 181 MARLRRELDQVSRTRGLHRDRRQRAPWPIIALVGYTNAGKSTLFNRLTGAHVM-AKDLLF 239

Query: 253 TTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D     + L G     +SDT G             K T  EV +ADL++ +++I   
Sbjct: 240 ATLDPTLRQIQLPGIDKAILSDTVGFVSDLPTQLVAAFKATLEEVVSADLLIHVRDIAHP 299

Query: 312 K-------------EISFPKNIDFIFIGTKSDLYSTYTEE----------YDHLISSFTG 348
                         EI             K DL      E          +   +S+ +G
Sbjct: 300 DSEAQRADVEAVLTEIGVDPETPRFEAWNKIDLVEGELREDLLAEAGRRPHIVAVSAMSG 359

Query: 349 EGLEELINKIKSILSNKFKK 368
           EG+++L+ ++ + L++  ++
Sbjct: 360 EGIDQLVEQVAAALTSGHRR 379


>gi|91217241|ref|ZP_01254202.1| GTP-binding protein HflX [Psychroflexus torquis ATCC 700755]
 gi|91184584|gb|EAS70966.1| GTP-binding protein HflX [Psychroflexus torquis ATCC 700755]
          Length = 410

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 18/191 (9%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           + +G  G ++R    + ++G++N GKS+L N ++K +V    +    T D     + +  
Sbjct: 191 VQRGNRGSLVR----VALVGYTNVGKSTLMNVISKSEV-FAENKLFATLDTTVRKVVIRN 245

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------------NSKKEI 314
               ++DT G          E  K T  EV  ADL+L + +I            NS  + 
Sbjct: 246 LPFLLTDTVGFIRKLPTQLVESFKSTLDEVREADLLLHVVDISHENFEDHIESVNSILDD 305

Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
              K+   I +  K D Y     E D L+   + +    L    K+ +  +   + F   
Sbjct: 306 INAKDKPCIMVFNKIDNYEPEVIEEDDLMVEKSYQHY-TLEEWKKTWMQREGDNVLFISA 364

Query: 375 SHKRHLYHLSQ 385
           + K ++    +
Sbjct: 365 TEKENIEEFRK 375


>gi|238855530|ref|ZP_04645833.1| GTP-binding protein HflX [Lactobacillus jensenii 269-3]
 gi|282932308|ref|ZP_06337743.1| GTP-binding protein HflX [Lactobacillus jensenii 208-1]
 gi|313473020|ref|ZP_07813507.1| GTP-binding protein HflX [Lactobacillus jensenii 1153]
 gi|238831814|gb|EEQ24148.1| GTP-binding protein HflX [Lactobacillus jensenii 269-3]
 gi|239528770|gb|EEQ67771.1| GTP-binding protein HflX [Lactobacillus jensenii 1153]
 gi|281303529|gb|EFA95696.1| GTP-binding protein HflX [Lactobacillus jensenii 208-1]
          Length = 423

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 25/216 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAK- 241
             + + +   I  +K ++ +  +Q  +    RN  K   + ++G++NAGKS+  N L K 
Sbjct: 162 ELNRRTIDKQITAIKKELQNVATQESIKSKRRNNSKLPQVALVGYTNAGKSTTMNGLLKA 221

Query: 242 -----KDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLE 295
                     V ++   T D     ++ +G     ISDT G          E  K T  E
Sbjct: 222 FNNDASKEVFVKNMLFATLDTSVRRINFDGTNDFIISDTVGFISKLPHNLIESFKATLKE 281

Query: 296 VENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEY---D 340
             +ADLI+ + + +    +   K            NI  +    K+DL +    E    D
Sbjct: 282 ASDADLIVNIVDSSDSNMLQMIKTTQKVLHEIGITNIPVVTAYNKADLTNKKFPEIEGND 341

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            L S+   + ++ L   I   + + +K L   +P +
Sbjct: 342 ILYSAKDSKSIKALAKFITKRIFSNYKTLNIELPLN 377


>gi|110669025|ref|YP_658836.1| GTP-binding protein [Haloquadratum walsbyi DSM 16790]
 gi|109626772|emb|CAJ53240.1| GTP-binding protein [Haloquadratum walsbyi DSM 16790]
          Length = 324

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 71/184 (38%), Gaps = 20/184 (10%)

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             +++ DI    + I S     K    IR +   IV+ G+ N GKSS  NA+ + D  I 
Sbjct: 125 MADLVEDIADDLDQIGSARDAVKNLPDIRPDEPAIVVAGYPNVGKSSFVNAITRADNEIA 184

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN-ADLILLLK 306
              P TT  +     +      +I DT G+ +       +  ++    +E+ AD+IL + 
Sbjct: 185 H-YPFTTTGIHVGHFERNRIRYQIVDTPGLLDRPATERNDIERQAVSAIEHLADIILFMT 243

Query: 307 EI---------------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
           +                +   E    + I  + +  KSD         D  +S    EG+
Sbjct: 244 DASEACGYPLADQLALRDDVIERFREREIPVLTVNNKSDRSEAIA--ADCQMSIKYDEGI 301

Query: 352 EELI 355
           + ++
Sbjct: 302 DTVL 305


>gi|319639175|ref|ZP_07993926.1| GTP-binding protein era [Neisseria mucosa C102]
 gi|317399359|gb|EFV80029.1| GTP-binding protein era [Neisseria mucosa C102]
          Length = 309

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 43/220 (19%)

Query: 202 DISSHI-SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           DI + + ++ +     R G+ + I+G  N GKS+L N L  + ++I +    TTR+ +T 
Sbjct: 2   DIETFLQNESQHPTDYRCGF-VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTG 60

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV----------------ENADLILL 304
               +       DT G +        + + +   E                  +AD ++L
Sbjct: 61  IYTDDTAQFVFVDTPGFQTNHRNALNDRLNQNVTEALSGVDVVVFVVEAMRFTDADRVVL 120

Query: 305 LKEINSKKEISFPKNIDFIFIGTKSD------------LYSTYTEEYDH----LISSFTG 348
                       PK+   + +  K D              +   +E++      +S+  G
Sbjct: 121 ---------KQLPKHTPVVLVVNKIDKDKAKDKFALEAFINEVRQEFEFAASEAVSAKHG 171

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
             +  L+  +K  L       P  + + K   +   + VR
Sbjct: 172 LRIANLLELLKPYLPESIPMYPEDMVTDKSSRFLAMEIVR 211


>gi|294848301|ref|ZP_06789048.1| GTP-binding protein HflX [Staphylococcus aureus A9754]
 gi|295406243|ref|ZP_06816050.1| GTP-binding protein HflX [Staphylococcus aureus A8819]
 gi|297244471|ref|ZP_06928354.1| GTP-binding protein HflX [Staphylococcus aureus A8796]
 gi|294825101|gb|EFG41523.1| GTP-binding protein HflX [Staphylococcus aureus A9754]
 gi|294968831|gb|EFG44853.1| GTP-binding protein HflX [Staphylococcus aureus A8819]
 gi|297178501|gb|EFH37747.1| GTP-binding protein HflX [Staphylococcus aureus A8796]
          Length = 415

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 99/261 (37%), Gaps = 21/261 (8%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 124 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 182

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 183 NEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFA- 241

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 242 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 301

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELIN 356
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L+ 
Sbjct: 302 YRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVK 361

Query: 357 KI-KSILSNKFKKLPFSIPSH 376
            +    +  +      +I ++
Sbjct: 362 TLFIDEIKRQLTYYDETIATN 382


>gi|117618820|ref|YP_855468.1| GTP-binding protein HflX [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117560227|gb|ABK37175.1| GTP-binding protein HflX [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 428

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 84/245 (34%), Gaps = 29/245 (11%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + +   I  +   +     Q + G   RN      + ++G++NAGKS+LFN L    V
Sbjct: 163 DRRLLRERIKAILRRLDKVAKQREQGRRARNRNEVPTVSLVGYTNAGKSTLFNQLTAASV 222

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T    L   +  +   V ++DT G             K T  E   ADL+L 
Sbjct: 223 YAADQLFATLDPTLRKLVIQDVGDVILADTVGFIRHLPHDLVAAFKATLQETREADLLLH 282

Query: 305 LKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYT---------EEYDHL 342
           + +   ++             EI    +   + I  K D    +                
Sbjct: 283 VVDCADEQMQENIESVQQVLAEIE-ADDRPQLMICNKIDKLGEHPVGLERDEEGRPVRVW 341

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           +S+ TGEG  +L   +  +L+         +P     L      ++ +E    +E+    
Sbjct: 342 LSAQTGEGCADLFTALTELLAGSMVHHTLQLPPSAARLRSALYRLKGIEQEGFSEEG--- 398

Query: 403 DIIAE 407
           D + E
Sbjct: 399 DFVLE 403


>gi|326798579|ref|YP_004316398.1| GTP-binding proten HflX [Sphingobacterium sp. 21]
 gi|326549343|gb|ADZ77728.1| GTP-binding proten HflX [Sphingobacterium sp. 21]
          Length = 400

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 69/184 (37%), Gaps = 16/184 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + +LN I  LK  +     Q +     R    ++ ++G++N GKS++ N ++K +V  
Sbjct: 171 DRRMILNKISLLKEKLKQIDKQNETQRKNRGELIRVALVGYTNVGKSTIMNMISKSEV-F 229

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + ++     +SDT G          E  K T  EV  AD+++ + 
Sbjct: 230 AENKLFATLDTTVRKVVIDNLPFLLSDTVGFIRKLPHHLVECFKSTLDEVREADILVHVV 289

Query: 307 EINSKKEISFPK------------NIDFIFIGTKSDLY--STYTEEYDHLISSFTGEGLE 352
           +I+                     +   I +  K D Y  +    + +    +     ++
Sbjct: 290 DISHPNFEDHINTVNETLKDLGAIDKPVITVFNKIDAYKPAEVARDDNGDEQAKKNITID 349

Query: 353 ELIN 356
           +  N
Sbjct: 350 DFKN 353


>gi|284006740|emb|CBA71997.1| GTP-binding protein [Arsenophonus nasoniae]
          Length = 284

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 65/180 (36%), Gaps = 22/180 (12%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGI 289
           GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E    + +   
Sbjct: 2   GKSTLLNQLLGQKVSITSRKPQTTRHRIMGIETENNYQTIYVDTPGLHVEEKRAINRLMN 61

Query: 290 KRTFLEVENADLILLLKE-----INSKKEISFPKN--IDFIFIGTKSDLYSTYTEEYDH- 341
           +     + + +LI+ + E      + +  I+  ++     + +  K D     T    H 
Sbjct: 62  RAASSSIGDVELIIFVVEGTHWTTDDEMVINKLRHLPCPVLLVINKIDNVVNKTHLLPHI 121

Query: 342 -------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
                         IS+  G G++ +   ++  +       P    + +   +  S+ +R
Sbjct: 122 EFLSKQMNFLDIVPISAEKGTGIDIITKIVRQHMPEAAHHFPADYITDRSQRFMASEIIR 181


>gi|253733457|ref|ZP_04867622.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728511|gb|EES97240.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
          Length = 412

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 99/261 (37%), Gaps = 21/261 (8%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 180 NEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 298

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELIN 356
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L+ 
Sbjct: 299 YRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNCPASDLPNVFVSSKNDGDKLLVK 358

Query: 357 KI-KSILSNKFKKLPFSIPSH 376
            +    +  +      +I ++
Sbjct: 359 TLFIDEIKRQLTYYDETIATN 379


>gi|194397324|ref|YP_002037328.1| GTP-binding proten HflX [Streptococcus pneumoniae G54]
 gi|194356991|gb|ACF55439.1| GTP-binding proten HflX [Streptococcus pneumoniae G54]
          Length = 412

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 102/266 (38%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLEYSTFKIGLIGYTNAGKSTIMNILTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------- 309
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + +       
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 310 SKKEISFPKNIDFIFI-----GTKSDLYSTYTE-EYDHLISSFTGEGLEE-----LINKI 358
            K  +S  K++D   I       K+DL   +T  +  + + S   E   E     L++KI
Sbjct: 296 EKTVLSIMKDLDMEDIPHLTLYNKADLVEDFTPTQTPYTLISAKSEDSRENLQALLLDKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 356 KEIFEAFTLRVPFSKSYKIHDLESVA 381


>gi|124005070|ref|ZP_01689912.1| GTP-binding protein HflX [Microscilla marina ATCC 23134]
 gi|123989322|gb|EAY28883.1| GTP-binding protein HflX [Microscilla marina ATCC 23134]
          Length = 381

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 82/204 (40%), Gaps = 23/204 (11%)

Query: 188 SSKEVLNDILFLKNDISSH-ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + + + I  L+  +    +      +      ++ ++G++N GKS++    +K D+  
Sbjct: 169 DRRIIKDKITLLRKKLDKIDLQNATRRKTRGQQVRVALVGYTNVGKSTIMQLFSKADIYA 228

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             ++  T    +   +        ++DT G          E  K T  EV  AD+++ + 
Sbjct: 229 KNELFATVDSTVRKVV-FNNIPFLLTDTVGFIRKLPTTLIESFKSTLDEVREADILIHVA 287

Query: 307 EINS---KKEISFPK---------NIDFIFIGTKSDLYSTYTE-----EYDHLI----SS 345
           ++++   +++I             +   I +  K DL           EYD+      S+
Sbjct: 288 DVSTSFCEEQIETVNKTLLEIDAIDKPTILVLNKIDLVDEMPAWVSSLEYDNTEVVVVSA 347

Query: 346 FTGEGLEELINKIKSILSNKFKKL 369
              +G++EL  K+ +++  KF K+
Sbjct: 348 QEKQGIDELKAKVLALVEEKFYKI 371


>gi|303228588|ref|ZP_07315415.1| hydrogenase maturation GTPase HydF [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516767|gb|EFL58682.1| hydrogenase maturation GTPase HydF [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 425

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 73/157 (46%), Gaps = 13/157 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKS+L N L  + V++V+++ GTT D ++  +++     V I+DTAG
Sbjct: 8   NRVHIGFFGRCNAGKSTLINMLTDQPVSLVSEVAGTTTDPVSKSMEILPLGPVVITDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFPKNIDFIFI-------- 325
           I +T ++     I+++   ++  +L + +    E  +  ++ +   +    +        
Sbjct: 68  IDDTSELGALR-IEKSEEIIKKINLAVYVLRNDEAPTADDMMWLNKLKQNNVPIALFINE 126

Query: 326 GTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
              SD  ST+  + +   ++         ++ I +++
Sbjct: 127 INASDSESTHDNDSNGNDANLNYVDAYPDLSAIATVV 163


>gi|284024299|ref|ZP_06378697.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
           132]
          Length = 412

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 99/261 (37%), Gaps = 21/261 (8%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 180 NEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 298

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELIN 356
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L+ 
Sbjct: 299 YRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVK 358

Query: 357 KI-KSILSNKFKKLPFSIPSH 376
            +    +  +      +I ++
Sbjct: 359 TLFIDEIKRQLTYYDETIATN 379


>gi|260432757|ref|ZP_05786728.1| GTP-binding protein Era [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416585|gb|EEX09844.1| GTP-binding protein Era [Silicibacter lacuscaerulensis ITI-1157]
          Length = 302

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 28/174 (16%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDAQLVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------------NSKKEISFPKNIDFIF 324
           + +    +++  +   +    +AD+I+L+ E             +   EI+  +      
Sbjct: 63  LFKPRRRLDRAMVAAAWGGAADADIIVLMVEAHRGITEGVERILDGLSEIA--QGRKVAL 120

Query: 325 IGTKS-------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
              K              DL   +      +IS+ TG G+E+L   +   L   
Sbjct: 121 AINKIDRVEAPALLSLTRDLNDRFPFAETFMISAETGHGVEDLRKWLAQQLPEG 174


>gi|151221426|ref|YP_001332248.1| hypothetical protein NWMN_1214 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|150374226|dbj|BAF67486.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
          Length = 412

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 99/261 (37%), Gaps = 21/261 (8%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 180 NEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 298

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELIN 356
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L+ 
Sbjct: 299 YRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVK 358

Query: 357 KI-KSILSNKFKKLPFSIPSH 376
            +    +  +      +I ++
Sbjct: 359 TLFIDEIKRQLTYYDETIATN 379


>gi|114327788|ref|YP_744945.1| GTP-binding protein hflX [Granulibacter bethesdensis CGDNIH1]
 gi|114315962|gb|ABI62022.1| GTP-binding protein hflX [Granulibacter bethesdensis CGDNIH1]
          Length = 460

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 108/307 (35%), Gaps = 32/307 (10%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ +  +  + S L   W   L   R          E +       + + + 
Sbjct: 139 AATREGTLQVELAHLEYQRSRLVRSWTH-LERQRGGFGFLGGPGETQI--EADRRLITDR 195

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           I+ LK ++        L    R       + ++G++NAGKS+LFNA+    V     +  
Sbjct: 196 IVKLKRELEQVRRTRGLHRTARQRVPFPVVALVGYTNAGKSTLFNAMTGSTVLAKDQLFA 255

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T    +       G  V +SDT G             + T  EV  AD+IL +++++   
Sbjct: 256 TLDPTMRGLRLRSGRRVILSDTVGFISELPTELIAAFRATLEEVAEADVILHVRDVSHPD 315

Query: 313 EISFPKNIDFIF-------------------IGTKSDLYSTYTE----EYDHLISSFTGE 349
             +   ++  +                    +  K+DL               +S+ TG 
Sbjct: 316 TAAQRHDVQLVLDGMVRDHDLDADWRGRMIEVLNKADLLGGVEHVSVAPGSVAVSAITGA 375

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYH-LSQTVRYLEMASLNEKDCGLDIIAEN 408
           GL+EL   I + ++       +S+P+        L +    L+     E   G+  +   
Sbjct: 376 GLDELQAVIDARIAAGLTIAHYSVPAADGAAMAWLHEHGEVLDRQDDAEN--GMIAVTVR 433

Query: 409 LRLASVS 415
           LR A  +
Sbjct: 434 LRPADQA 440


>gi|327400091|ref|YP_004340930.1| ferrous iron transport protein B [Archaeoglobus veneficus SNP6]
 gi|327315599|gb|AEA46215.1| ferrous iron transport protein B [Archaeoglobus veneficus SNP6]
          Length = 565

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ ++G+ N GK++L NAL       V + PGTT +       + G  V+  D  GI  
Sbjct: 2   LKVAMVGNPNVGKTALLNALTGGSF-EVGNFPGTTVEKKEGRAVINGVEVEFVDLPGIYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYS 333
            +     E I R +L  E  D++L + +  + +   +         I  +      D   
Sbjct: 61  LEAYSLDEKIARDYLVNEKPDVVLNVIDATNLERNLYLTLQLCNLGIPMVIALNMLDEAR 120

Query: 334 TYTEEYD------------HLISSFTGEGLEELINKI 358
               E D                +   +G+EEL   +
Sbjct: 121 KRGIEIDAKKLEEILGVPVIETIAVEKKGIEELKKAL 157


>gi|86605426|ref|YP_474189.1| GTP-binding domain-containing protein [Synechococcus sp. JA-3-3Ab]
 gi|86553968|gb|ABC98926.1| GTP-binding protein domain [Synechococcus sp. JA-3-3Ab]
          Length = 404

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 16/172 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
            +   + L     L+ +  +         ++   + I + G  N GKS++ NAL  +   
Sbjct: 15  CWDHWQALASRQDLQPEFKAL--STLRKRLVTRVFSIAVFGLVNRGKSAVLNALTGEARL 72

Query: 246 IVTDIPGTTRDVLTIDLDLE-GYL--VKISDTAGIRETDDIVEKEGIKR-TFLEVENADL 301
            V  + G T+   ++      G    V+  DT G+ E +     E  ++  +     ADL
Sbjct: 73  EVGPLNGVTQQPQSLLWQPGPGIPWQVRFIDTPGLNEING----EAREQLAWEVARAADL 128

Query: 302 ILLLK--EINSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
           IL +   ++   +  +  +    +   + +  K DLYS    +      S  
Sbjct: 129 ILFVIAADLTQLEYQALLELRTLHKPILLVLNKCDLYSEAELQAIRAQISRH 180


>gi|326335884|ref|ZP_08202061.1| GTP-binding protein HflX [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691848|gb|EGD33810.1| GTP-binding protein HflX [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 401

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 82/217 (37%), Gaps = 16/217 (7%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L       I +    +    G   ++ ++G++N GKS+L N ++
Sbjct: 161 ETEIETDRRIVRDRIALLKKKLETIDRQMSTQRSNRGALVRVALIGYTNVGKSTLMNLIS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K +V    +    T D     + +      +SDT G          E  K T  EV +AD
Sbjct: 221 KSEV-FAENKLFATLDTTVRKVVIGNLPFLLSDTVGFIRKLPTQLIESFKSTLDEVRDAD 279

Query: 301 LILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           L+L + +I+                     N   I +  K D Y+  T E D L+   T 
Sbjct: 280 LLLHIVDISHPNFEEHIASVNQILGEIKSINKPTIMVFNKIDAYTHQTIEDDDLMIEKTS 339

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
                L    ++ ++     + F    +K ++    +
Sbjct: 340 RHFS-LEEWKQTWMNRMNGDVIFISALNKENIQEFRE 375


>gi|160947592|ref|ZP_02094759.1| hypothetical protein PEPMIC_01527 [Parvimonas micra ATCC 33270]
 gi|158446726|gb|EDP23721.1| hypothetical protein PEPMIC_01527 [Parvimonas micra ATCC 33270]
          Length = 424

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 101/271 (37%), Gaps = 28/271 (10%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            + T+  +                      +  +  I       ++ ++   +    ++ 
Sbjct: 110 RARTKEAKLQVKLAKLKYTLPRLSALRSGFSRQQGGIGGKGIGEQQIELDRRTINREISS 169

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA--KKD------VAIV 247
           I     +I  + ++ +   I      I ++G++NAGKS+L N L    KD         V
Sbjct: 170 ITSQLKEIEKNRNEIRKKRINSKEPIISLVGYTNAGKSTLINKLISYGKDENSEIKEVFV 229

Query: 248 TDIPGTTRDV-LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
            D+   T D  +   L L G  V   DT G          E  K T  E++ +DLIL + 
Sbjct: 230 KDMLFATLDTYVREGLLLNGSKVMYVDTVGFVCDIPHNLVESFKGTLEEIKYSDLILHVV 289

Query: 307 EINS---KKEISFPKNI---------DFIFIGTKSDLYSTYTEEYDH-------LISSFT 347
           +I++    ++I    ++         + I++  K D  +    ++ +        IS+  
Sbjct: 290 DISNVNVDEQIKITNDMIKKLECEDKNVIYVFNKVDKLADENIKFQYANIENKVFISAKN 349

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
            E +  L+ +I+ +L +   K    IP  K+
Sbjct: 350 DEDIILLLKEIEKVLFSSLVKTELLIPYDKQ 380


>gi|323485837|ref|ZP_08091172.1| hypothetical protein HMPREF9474_02923 [Clostridium symbiosum
           WAL-14163]
 gi|323400825|gb|EGA93188.1| hypothetical protein HMPREF9474_02923 [Clostridium symbiosum
           WAL-14163]
          Length = 665

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 36/220 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             +  +G+ N GK++LFNA     +  V + PG T + +  +   +G  +K+ D  GI  
Sbjct: 8   ITVGFVGNPNCGKTTLFNAFTGAKLK-VANWPGVTVERVEGETSYKGRPIKVIDLPGIYS 66

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                 +E + R  +E    D+I+ + + +S +                I      D+  
Sbjct: 67  LTSYTIEERVTRKCIEDNEVDVIVNVVDASSLERNLYLTLQLLELKKPVILALNMMDIVE 126

Query: 334 TYTEEYDHLI-------------SSFTGEGLEELINKI---------------KSILSNK 365
               E D                S+    GL+ L++ +                  + ++
Sbjct: 127 DRGMEIDLHRLPEMLGHIPVVPVSARKRTGLDVLMHAVVHHYEEEPQGVVVRYSDSIEDR 186

Query: 366 FKKLPFSIPSHKRHLYHLS-QTVRYLEMASLNEKDCGLDI 404
             K+   + +H   L ++    ++ +E      KD  +D+
Sbjct: 187 IAKIEVVLKAHFGQLDNMRWHAIKMMEYDEEVCKDHPVDL 226


>gi|313905734|ref|ZP_07839094.1| GTP-binding proten HflX [Eubacterium cellulosolvens 6]
 gi|313469441|gb|EFR64783.1| GTP-binding proten HflX [Eubacterium cellulosolvens 6]
          Length = 411

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 103/271 (38%), Gaps = 29/271 (10%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
            +E + ++ +  +    + L G   + L+ +   I       ++ ++      + +  + 
Sbjct: 118 TSEGKIQVELAQLKYRQAHLVG-MRNYLSRLGGGIGTRGPGEKKLEIDRRLIADRIGALG 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK----KDVAIVTDIPGT 253
               ++  H    +      N  ++ I+G++NAGKS+L N +      ++ A+   +  T
Sbjct: 177 RELKEVRKHREVLRAARKKGNIRQVAIVGYTNAGKSTLLNTMTNAGVLEEDALFATLDPT 236

Query: 254 TRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           TR      LDL G   V ++DT G  +       +  + T  E   AD I+ + + ++ +
Sbjct: 237 TR-----ILDLPGGSQVLLTDTVGFIDKLPHALIDAFRSTLEEAAYADYIIHVADASNPR 291

Query: 313 EISF------------PKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGLEEL 354
                             +   + +  K D        +DH       +S+  G GLE+L
Sbjct: 292 VEQQMEVVYETLHELGADDKKIVTLFNKQDKTDGSVRLHDHRADYVLSVSAKEGTGLEDL 351

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
            N ++ I+  +   +    P  +     L +
Sbjct: 352 RNVLEKIILEEQIFVERVFPYTEAGKLALIR 382


>gi|67922497|ref|ZP_00516006.1| GTP-binding protein, HSR1-related [Crocosphaera watsonii WH 8501]
 gi|67855668|gb|EAM50918.1| GTP-binding protein, HSR1-related [Crocosphaera watsonii WH 8501]
          Length = 491

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 24/213 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           + +  + ++ ++ +    N + SH S+ +     +    I I+G++NAGKS+L NAL   
Sbjct: 279 ETERRAIQKRISRLQQEVNKLQSHRSRLRQQRQKQEVPSIAIVGYTNAGKSTLINALTNA 338

Query: 243 DVAIVTDIPGT---TRDVLTIDLDLEGYLVK--ISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +V     +  T   T   L+   D  G      ++DT G          +  + T  EV 
Sbjct: 339 EVYTADQLFATLDPTTRRLSGIDDNTGQPYTFLLTDTVGFIHELPPSLVDAFRATLEEVT 398

Query: 298 NADLILLLKEINSKKEISFPKNI------------DFIFIGTKSDLYSTYT-----EEYD 340
            AD +L L +++        +++              + +  K D     T     EEY 
Sbjct: 399 EADALLHLVDLSHPAWQHHIQSVMNILQEMPLVPGPILLVFNKIDTVDGETLKVAQEEYP 458

Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
               IS+    GLE L +K+  ++    K   F
Sbjct: 459 LAVFISASQRLGLETLRHKLSQLVQYALKNSSF 491


>gi|315425254|dbj|BAJ46922.1| GTP-binding protein HflX [Candidatus Caldiarchaeum subterraneum]
 gi|315427488|dbj|BAJ49092.1| GTP-binding protein HflX [Candidatus Caldiarchaeum subterraneum]
          Length = 412

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 104/262 (39%), Gaps = 35/262 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGK--LGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
           +    EV   I  +K  +     +        +  G   + + G++NAGK++LFN  + +
Sbjct: 149 DVYYNEVFRRISTIKQKLKQIRMRKNLVRQRRLEGGLPTVALTGYTNAGKTTLFNRFSGE 208

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +         TT       +   G    +SDT G  +    +  E    T  E   ADL+
Sbjct: 209 EH-PAGPQLFTTLSTTARIVKFRGRKAYLSDTVGFIKNLPHLLVESFHSTLSEFIYADLL 267

Query: 303 LLLKEINSKKEISFP--------------KNIDFIFIGTKSDLYSTYTEEYD-------- 340
           LL+ +I+ +K +                 KN+  + +  K D  + Y E+ +        
Sbjct: 268 LLVVDISEEKSVVESKLNTCLNVLDEVGVKNVPILVVFNKIDAAADYREKIESINPEFRY 327

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400
             +S++TG+GL+ L   +  ++   + ++   + + +     L++  ++  +  +     
Sbjct: 328 VAVSAWTGQGLDTLEEAVADMM-GGYIRVRAQLENGETTPSLLNEIKQFCNVLKIEYNSS 386

Query: 401 GLDI-------IAENL-RLASV 414
           G +I       +AE + RLA+ 
Sbjct: 387 GYEIECETPLQLAEKIKRLAAE 408


>gi|322824721|gb|EFZ30032.1| small GTP-binding protein, putative [Trypanosoma cruzi]
          Length = 450

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 73/189 (38%), Gaps = 28/189 (14%)

Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214
             +    ++ L HI S  + + D+    D+++ + +   + +  +++             
Sbjct: 132 MEMLAAVLEPLYHIHSMQKVENDW----DIEDLAMQGDESAMEEIRD-----------RN 176

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
                 +I ++G +N+GKSSL N L   + +   D   +TRD + +    +G  +K+ DT
Sbjct: 177 CADRFIRIALVGRTNSGKSSLINRLVGFERSRAVDEKNSTRDPVELPCIYKGRKMKLIDT 236

Query: 275 AGIR----ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF---------PKNID 321
           AG+       D          +  E+  A +++++ +        +          +   
Sbjct: 237 AGLTRNRFRADRDFIGRIHDLSVNEIRYAHVVIVVFDATEGHPNKYDMAVLHSVAAEGRP 296

Query: 322 FIFIGTKSD 330
           F+    K D
Sbjct: 297 FLLCANKWD 305



 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 14/105 (13%)

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
               IV D  G TRD +     LEG    I DT G+     + E       F  VE AD 
Sbjct: 9   HRKNIVRDFDGITRDSVEGHAQLEGMHFTIIDTPGMVNGKLVEE------AFRTVETADA 62

Query: 302 ILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEE 338
            + +  ++     +          K +    +  K DL     E+
Sbjct: 63  AIFVTSVDEDLHSAEFDLIHYLQLKCMPAFVLVNKMDLVPLDEED 107


>gi|281421297|ref|ZP_06252296.1| GTP-binding protein HflX [Prevotella copri DSM 18205]
 gi|281404832|gb|EFB35512.1| GTP-binding protein HflX [Prevotella copri DSM 18205]
          Length = 415

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 17/196 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  +  LK  + + I + K  +    G   ++ ++G++N GKS++ N L+K +
Sbjct: 181 EMDRRIILGRMSLLKERL-AEIDKQKTTQRKNRGRMVRVALVGYTNVGKSTIMNLLSKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     ++DT G          +  K T  E   ADL+L
Sbjct: 240 V-FAENKLFATLDTTVRKVVVDNLPFLLADTVGFIRKLPTDLVDSFKSTLDETREADLLL 298

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYS-TYTEEYDHLISSFTGEG 350
            + +I+    +++I   +N            + I  K D YS    EE D          
Sbjct: 299 HVVDISHPDFEEQIQVVENTLKELDCADKPSMIIFNKIDNYSWVEKEEDDLTPMEKENIP 358

Query: 351 LEELINKIKSILSNKF 366
           LE+L     + L+   
Sbjct: 359 LEDLKKTWMAKLNEDC 374


>gi|269215936|ref|ZP_06159790.1| GTP-binding protein Era [Slackia exigua ATCC 700122]
 gi|269130195|gb|EEZ61273.1| GTP-binding protein Era [Slackia exigua ATCC 700122]
          Length = 351

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 94/227 (41%), Gaps = 26/227 (11%)

Query: 209 QGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
           +   G  + N +K   + ++G  N GKSSL NA+    VAI +    TTR      L  +
Sbjct: 44  EASEGTFMSNQFKSGFVTLVGRPNVGKSSLINAVVGHKVAITSSTAQTTRHRFRAILTTD 103

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISF 316
              V + DT G+ +  D + +E      + +E+ D++  + + +            ++  
Sbjct: 104 DAQVVMVDTPGLHKPHDALGEELNTSAIMALEDVDVVAFVVDASQPFGRGDEWVANQVRA 163

Query: 317 PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGLEELINKIKSILS 363
            K    I + +K+DL      E              + ++S+ TG  ++  +  + + L 
Sbjct: 164 AKAPRKILVLSKADLVDAQIVEDQLNAARALDSWDDEIVLSAKTGFNVDGFVQAVIAALP 223

Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENL 409
              K  P  + + +     +++ +R  +  +  +E    + ++A++L
Sbjct: 224 AGPKWFPDDMDTDQPFEVIVAEFIREKILRSYRDEVPHSIGVVADDL 270


>gi|224030001|gb|ACN34076.1| unknown [Zea mays]
          Length = 439

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 81/242 (33%), Gaps = 38/242 (15%)

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           + +    + D     DV        L      + D+      G++ E  +    + I+G 
Sbjct: 105 LGAAAVDEEDEDRSRDVALALLDAALEAPDEDEEDL------GEVREEDQMSLSVGIVGA 158

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287
            NAGKSSL N +    VA V+    TT   +   L      +   DT G+          
Sbjct: 159 PNAGKSSLTNTMVGTKVAAVSRKTNTTTHEILGVLTKGNTQICFFDTPGLMLGHHGFPYR 218

Query: 288 ----GIKRTFLEVENADLILLLKEIN------SKKEISFPK--------NIDFIFIGTKS 329
                ++  +  +   DL++++ ++N        + I   K        N   I    K 
Sbjct: 219 DVTVRVESAWSSINLYDLLIVMFDVNRHLNLPDSRVIKLIKRLGTEVNPNQRRILCMNKV 278

Query: 330 DLYSTYTE--------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           DL     +              E   ++S   G+G+++L+  +      +      ++ +
Sbjct: 279 DLVEDKKDLLKVAKEFEDLPGYERYFMVSGLKGKGVKDLVQYLMEQAVRRPWDEEPTVMT 338

Query: 376 HK 377
            +
Sbjct: 339 EE 340


>gi|6562623|emb|CAA74749.2| GTP-binding protein [Homo sapiens]
 gi|15779144|gb|AAH14636.1| Pseudoautosomal GTP-binding protein-like protein [Homo sapiens]
 gi|30583559|gb|AAP36024.1| Pseudoautosomal GTP-binding protein-like [Homo sapiens]
 gi|61362337|gb|AAX42202.1| pseudoautosomal GTP-binding protein-like [synthetic construct]
 gi|61362343|gb|AAX42203.1| pseudoautosomal GTP-binding protein-like [synthetic construct]
          Length = 403

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 108/298 (36%), Gaps = 32/298 (10%)

Query: 136 SSETEMQR-RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           ++ T+  R ++++  M              + H+   + +       E       + +  
Sbjct: 98  NARTKEARLQVALAEMP----LHRSNLKRDVAHLYRGVGSRYIMGSGESFMQLQQRLLRE 153

Query: 195 DILFLKNDISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV-TDI 250
               ++  +     +    +     R    I ++G++N GK++L  AL   D AI   D 
Sbjct: 154 KEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIKALTG-DAAIQPRDQ 212

Query: 251 PGTTRDVLTIDLDLEGYLVKI-SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T DV      L   +  +  DT G          E    T  +V ++DLIL +++++
Sbjct: 213 LFATLDVTAHAGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDVAHSDLILHVRDVS 272

Query: 310 SKK---------------EISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLE 352
             +               ++  P     + +  K DL   Y  TE     +S+  G GL+
Sbjct: 273 HPEAELQKCSVLSTLRGLQLPAPLLDSMVEVHNKVDLVPGYSPTEPNVVPVSALRGHGLQ 332

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           EL  ++ + +     +   ++    R     +Q     + A++ E D   +  A ++R
Sbjct: 333 ELKAELDAAVLKATGRQILTL----RVRLAGAQLSWLYKEATVQEVDVIPEDGAADVR 386


>gi|20806764|ref|NP_621935.1| ferrous ion uptake system protein FeoB ( GTPase)
           [Thermoanaerobacter tengcongensis MB4]
 gi|20515224|gb|AAM23539.1| Ferrous ion uptake system protein FeoB (predicted GTPase)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 656

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 72/176 (40%), Gaps = 19/176 (10%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++    + + G++N GKS +FN L      I+ + PG T +     L  +G ++KI D  
Sbjct: 1   MKKEIVVALAGNANVGKSVIFNQLTG-MTQIIGNWPGKTVERAEGTLRYKGRIIKIIDLP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKS 329
           GI       ++E + R F+  E  D+++ + + ++ +            ++  +    + 
Sbjct: 60  GIYSLSAYSQEEIVSREFIAFEKPDVVINVVDASNLERNLFLTLQLLELHVPMVMALNQI 119

Query: 330 D------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           D                          +  G+GL+ELI+K+  ++ +   +  F+ 
Sbjct: 120 DYAIKKGIDINVEKLEKLLGIPVVETVATKGKGLQELIDKVLEVVDSYKGEDVFAY 175


>gi|307545953|ref|YP_003898432.1| GTP-binding protein HflX [Halomonas elongata DSM 2581]
 gi|307217977|emb|CBV43247.1| K03665 GTP-binding protein HflX [Halomonas elongata DSM 2581]
          Length = 438

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 86/239 (35%), Gaps = 25/239 (10%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + +   I  +   +    SQ       R+      + ++G++NAGKS+LFNAL  +  
Sbjct: 164 DRRLLRGRIKAIHKRLDKVRSQRGQNRRARSRAEIPSVSLVGYTNAGKSTLFNALT-ESR 222

Query: 245 AIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D     L++E    V ++DT G          E  + T  E   A L++
Sbjct: 223 VYAADQLFATLDPTLRRLEVEDVGPVVLADTVGFIRHLPHKLVEAFQATLQEAAEASLLV 282

Query: 304 LLKE-INSKKEISFPK-----------NIDFIFIGTKSDLYSTYT--------EEYDHLI 343
            + +  +  ++++  +           ++  + +  K DL+ +                +
Sbjct: 283 HVIDAADPDRDLNVTQVEEVLDEIGALDVPTLKVMNKVDLFDSAPRIERNAEGRPEAVWL 342

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           S+  G GLE     +   L++       ++   +  L      +  +     +E+   L
Sbjct: 343 SARDGRGLELFEQALSECLADDIIDFDITLAPAQGKLRASLHELGAVREERFDEQGRTL 401


>gi|285816987|gb|ADC37474.1| GTP-binding protein HflX [Staphylococcus aureus 04-02981]
          Length = 412

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 99/261 (37%), Gaps = 21/261 (8%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 180 NEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 298

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELIN 356
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L+ 
Sbjct: 299 YRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVK 358

Query: 357 KI-KSILSNKFKKLPFSIPSH 376
            +    +  +      +I ++
Sbjct: 359 TLFIDEIKRQLTYYDETIATN 379


>gi|253731925|ref|ZP_04866090.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724335|gb|EES93064.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 412

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 99/261 (37%), Gaps = 21/261 (8%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 180 NEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 298

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELIN 356
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L+ 
Sbjct: 299 YRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVK 358

Query: 357 KI-KSILSNKFKKLPFSIPSH 376
            +    +  +      +I ++
Sbjct: 359 TLFIDEIKRQLTYYDETIATN 379


>gi|254413882|ref|ZP_05027651.1| GTP-binding proten HflX, putative [Microcoleus chthonoplastes PCC
           7420]
 gi|196179479|gb|EDX74474.1| GTP-binding proten HflX, putative [Microcoleus chthonoplastes PCC
           7420]
          Length = 532

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 77/191 (40%), Gaps = 24/191 (12%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA----IVTDIPGTTRD 256
           N + +H S+ +     ++   I ++G++NAGKS+L N L   +V     +   +  TTR 
Sbjct: 339 NQLQAHRSRMRQRRQKQDVPTISVVGYTNAGKSTLLNTLTNAEVYTADQLFATLDPTTRR 398

Query: 257 -VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
             +T     E   V ++DT G          +  + T  EV  AD ++ L +++     +
Sbjct: 399 LPITYAETGESITVLLTDTVGFIHELPPPLVDSFRATLEEVTEADALIHLVDLSHPAWQN 458

Query: 316 FPKNI------------DFIFIGTKSDLYSTYT-----EEYDH--LISSFTGEGLEELIN 356
             +++              + +  K D   + T     EE+     +S+    GLE L  
Sbjct: 459 HIRSVMSILADMPVTPGPILVVFNKIDDVDSDTLVLAQEEFPQGVFVSASKRLGLETLRQ 518

Query: 357 KIKSILSNKFK 367
           KI  ++     
Sbjct: 519 KIAQLVDYAIA 529


>gi|32880121|gb|AAP88891.1| Pseudoautosomal GTP-binding protein-like [synthetic construct]
 gi|60653937|gb|AAX29661.1| pseudoautosomal GTP-binding protein-like [synthetic construct]
          Length = 404

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 108/298 (36%), Gaps = 32/298 (10%)

Query: 136 SSETEMQR-RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           ++ T+  R ++++  M              + H+   + +       E       + +  
Sbjct: 98  NARTKEARLQVALAEMP----LHRSNLKRDVAHLYRGVGSRYIMGSGESFMQLQQRLLRE 153

Query: 195 DILFLKNDISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV-TDI 250
               ++  +     +    +     R    I ++G++N GK++L  AL   D AI   D 
Sbjct: 154 KEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIKALTG-DAAIQPRDQ 212

Query: 251 PGTTRDVLTIDLDLEGYLVKI-SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T DV      L   +  +  DT G          E    T  +V ++DLIL +++++
Sbjct: 213 LFATLDVTAHAGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDVAHSDLILHVRDVS 272

Query: 310 SKK---------------EISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLE 352
             +               ++  P     + +  K DL   Y  TE     +S+  G GL+
Sbjct: 273 HPEAELQKCSVLSTLRGLQLPAPLLDSMVEVHNKVDLVPGYSPTEPNVVPVSALRGHGLQ 332

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           EL  ++ + +     +   ++    R     +Q     + A++ E D   +  A ++R
Sbjct: 333 ELKAELDAAVLKATGRQILTL----RVRLAGAQLSWLYKEATVQEVDVIPEDGAADVR 386


>gi|303230622|ref|ZP_07317372.1| hydrogenase maturation GTPase HydF [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514677|gb|EFL56669.1| hydrogenase maturation GTPase HydF [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 425

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 65/137 (47%), Gaps = 10/137 (7%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKS+L N L  + V++V+++ GTT D ++  +++     V I+DTAG
Sbjct: 8   NRIHIGFFGRCNAGKSTLINMLTDQPVSLVSEVAGTTTDPVSKSMEILPLGPVVITDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFPKNIDFIFIGTKSDLYS 333
           I +T ++     I+++   ++  +L + +    E  +  ++ +   +    +       +
Sbjct: 68  IDDTSELGALR-IEKSEEIIKKINLAVYVLRNDEAPTADDMMWLNKLKQNNVP-----IA 121

Query: 334 TYTEEYDHLISSFTGEG 350
            +  E +   S  T + 
Sbjct: 122 LFINEINTFDSKSTHDN 138


>gi|270292279|ref|ZP_06198493.1| GTP-binding protein HflX [Streptococcus sp. M143]
 gi|270279325|gb|EFA25168.1| GTP-binding protein HflX [Streptococcus sp. M143]
          Length = 412

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 98/266 (36%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNTLTSKIQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + ++      
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTE-----EYDHLISSFTGEGLEEL-INKI 358
            K            +I  + +  K+DL   +T            S  + E L+ L + KI
Sbjct: 296 EKTVLSIMKDLDMEDIPRLTLYNKADLVEDFTPTQTPYALISAKSEDSRENLQALFLEKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 356 KEIFEAFTLRVPFSKSYKIHDLESVA 381


>gi|325579068|ref|ZP_08149024.1| GTP-binding protein HflX [Haemophilus parainfluenzae ATCC 33392]
 gi|325159303|gb|EGC71437.1| GTP-binding protein HflX [Haemophilus parainfluenzae ATCC 33392]
          Length = 451

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 93/259 (35%), Gaps = 29/259 (11%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           K  +  +      +    +Q +      +   I ++G++NAGKS+LFN + + +V    D
Sbjct: 193 KVRIAQLQNRLAKVEKQRNQNRQTRQKADIPTISLVGYTNAGKSTLFNFITQANV-YAAD 251

Query: 250 IPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D     L ++      ++DT G             K T  E   A L+L + + 
Sbjct: 252 QLFATLDPTLRRLQIQDVGTAILADTVGFVRQLPHDLVSAFKSTLQETVEASLLLHVIDA 311

Query: 309 NSKKEIS------------FPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFT 347
              ++I                 +  + +  K DL        ++          +S+ +
Sbjct: 312 ADARKIENIEAVNLVLEEIKADKVPALLVYNKIDLLENVAPHIEYDDENKPVAVYLSAHS 371

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           GEGL+ L+  IK  L N+      ++   +  + H    +  +    +++    +  +  
Sbjct: 372 GEGLDLLLEAIKVRLKNEILSFTLTLLPQEGKIRHALYQLDSIRHEQISDGGEFILNVQI 431

Query: 408 N----LRLASVS--LGKIT 420
           +    L+L      L +I 
Sbjct: 432 DKVEWLKLCKQFPKLSEII 450


>gi|15924297|ref|NP_371831.1| GTP-binding protein proteinase modulator YnbA [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15926889|ref|NP_374422.1| hypothetical protein SA1147 [Staphylococcus aureus subsp. aureus
           N315]
 gi|57650297|ref|YP_186181.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160925|ref|YP_493895.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195015|ref|YP_499815.1| hypothetical protein SAOUHSC_01283 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150393854|ref|YP_001316529.1| GTP-binding protein HSR1-related [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979627|ref|YP_001441886.1| hypothetical protein SAHV_1296 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509471|ref|YP_001575130.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142539|ref|ZP_03567032.1| GTP-binding protein [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253316443|ref|ZP_04839656.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255006092|ref|ZP_05144693.2| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795639|ref|ZP_05644618.1| GTP-binding protein HflX [Staphylococcus aureus A9781]
 gi|258416042|ref|ZP_05682310.1| GTP-binding protein [Staphylococcus aureus A9763]
 gi|258420442|ref|ZP_05683384.1| GTP-binding protein HflX [Staphylococcus aureus A9719]
 gi|258434781|ref|ZP_05688855.1| GTP-binding proteinase modulator YnbA [Staphylococcus aureus A9299]
 gi|258444643|ref|ZP_05692972.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258447524|ref|ZP_05695668.1| GTP-binding protein [Staphylococcus aureus A6300]
 gi|258449366|ref|ZP_05697469.1| GTP-binding proteinase modulator YnbA [Staphylococcus aureus A6224]
 gi|258452605|ref|ZP_05700611.1| GTP-binding proteinase modulator YnbA [Staphylococcus aureus A5948]
 gi|258454745|ref|ZP_05702709.1| GTP-binding protein HflX [Staphylococcus aureus A5937]
 gi|262048188|ref|ZP_06021075.1| hypothetical protein SAD30_1964 [Staphylococcus aureus D30]
 gi|262051364|ref|ZP_06023587.1| hypothetical protein SA930_2086 [Staphylococcus aureus 930918-3]
 gi|269202922|ref|YP_003282191.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892793|ref|ZP_06301028.1| GTP-binding protein HflX [Staphylococcus aureus A8117]
 gi|282920550|ref|ZP_06328271.1| GTP-binding protein HflX [Staphylococcus aureus A9765]
 gi|282927647|ref|ZP_06335263.1| GTP-binding protein HflX [Staphylococcus aureus A10102]
 gi|296274863|ref|ZP_06857370.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
           MR1]
 gi|304381129|ref|ZP_07363782.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13701106|dbj|BAB42401.1| SA1147 [Staphylococcus aureus subsp. aureus N315]
 gi|14247077|dbj|BAB57469.1| similar to GTP-binding protein proteinase modulator YnbA
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|57284483|gb|AAW36577.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
           COL]
 gi|87126899|gb|ABD21413.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202573|gb|ABD30383.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|149946306|gb|ABR52242.1| GTP-binding protein HSR1-related [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721762|dbj|BAF78179.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368280|gb|ABX29251.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257789611|gb|EEV27951.1| GTP-binding protein HflX [Staphylococcus aureus A9781]
 gi|257839190|gb|EEV63666.1| GTP-binding protein [Staphylococcus aureus A9763]
 gi|257843390|gb|EEV67797.1| GTP-binding protein HflX [Staphylococcus aureus A9719]
 gi|257849142|gb|EEV73124.1| GTP-binding proteinase modulator YnbA [Staphylococcus aureus A9299]
 gi|257850136|gb|EEV74089.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257853715|gb|EEV76674.1| GTP-binding protein [Staphylococcus aureus A6300]
 gi|257857354|gb|EEV80252.1| GTP-binding proteinase modulator YnbA [Staphylococcus aureus A6224]
 gi|257859823|gb|EEV82665.1| GTP-binding proteinase modulator YnbA [Staphylococcus aureus A5948]
 gi|257863128|gb|EEV85892.1| GTP-binding protein HflX [Staphylococcus aureus A5937]
 gi|259160739|gb|EEW45760.1| hypothetical protein SA930_2086 [Staphylococcus aureus 930918-3]
 gi|259163754|gb|EEW48309.1| hypothetical protein SAD30_1964 [Staphylococcus aureus D30]
 gi|262075212|gb|ACY11185.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940796|emb|CBI49178.1| GTPase [Staphylococcus aureus subsp. aureus TW20]
 gi|282590650|gb|EFB95727.1| GTP-binding protein HflX [Staphylococcus aureus A10102]
 gi|282594212|gb|EFB99199.1| GTP-binding protein HflX [Staphylococcus aureus A9765]
 gi|282764790|gb|EFC04915.1| GTP-binding protein HflX [Staphylococcus aureus A8117]
 gi|302751127|gb|ADL65304.1| GTPase HflX [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340112|gb|EFM06053.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312829701|emb|CBX34543.1| GTP-binding proten HflX [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315131099|gb|EFT87083.1| GTP-binding protein [Staphylococcus aureus subsp. aureus CGS03]
 gi|315198547|gb|EFU28876.1| GTP-binding protein [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140877|gb|EFW32724.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143856|gb|EFW35628.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313976|gb|AEB88389.1| GTP-binding protein HSR1-related [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727567|gb|EGG64023.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           21172]
 gi|329727861|gb|EGG64312.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           21189]
          Length = 412

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 99/261 (37%), Gaps = 21/261 (8%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 180 NEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 298

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELIN 356
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L+ 
Sbjct: 299 YRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVK 358

Query: 357 KI-KSILSNKFKKLPFSIPSH 376
            +    +  +      +I ++
Sbjct: 359 TLFIDEIKRQLTYYDETIATN 379


>gi|150396315|ref|YP_001326782.1| HSR1-like GTP-binding protein [Sinorhizobium medicae WSM419]
 gi|150027830|gb|ABR59947.1| GTP-binding protein HSR1-related [Sinorhizobium medicae WSM419]
          Length = 465

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 79/209 (37%), Gaps = 31/209 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   I+ L+ ++       +L    R       + ++G++NAGKS+LFN +   
Sbjct: 192 EADRRLLQERIVKLERELEQVRRTRQLHRSKRKKVPHPIVALVGYTNAGKSTLFNRMTGA 251

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D+   T D     L L  G +V +SDT G             + T  EV  ADL
Sbjct: 252 GV-LAEDMLFATLDPTLRRLKLPHGRMVILSDTVGFISDLPTHLVAAFRATLEEVLEADL 310

Query: 302 ILLLKEINSKKEISFPKN----------------IDFIFIGTKSDLYSTYTEEY------ 339
           IL +++++     +   +                   + +  K D       E       
Sbjct: 311 ILHVRDLSDPDNQAQASDVLRILSDLGIDEKEGAERIVEVWNKIDKVEPEVREVLVKKAA 370

Query: 340 ----DHLISSFTGEGLEELINKIKSILSN 364
                  +S+ TGEG+ EL+ +I   LS 
Sbjct: 371 SVDNTVAVSAMTGEGVGELLTEIGRRLSG 399


>gi|288958341|ref|YP_003448682.1| GTP-binding protein [Azospirillum sp. B510]
 gi|288910649|dbj|BAI72138.1| GTP-binding protein [Azospirillum sp. B510]
          Length = 426

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 105/304 (34%), Gaps = 35/304 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  ++ + S L   W         F         + ++      + + 
Sbjct: 108 RARTREGMLQVELASLTYQKSRLVRSWTHLERQRGGFGFLGGPGESQLELDRRLIGDRII 167

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I     ++       +          + ++G++NAGKS+LFN LA  DV    D+   T
Sbjct: 168 KIKKELEEVRRTRGLHRKARAKVPYPVVALVGYTNAGKSTLFNRLANADV-FAQDLLFAT 226

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---- 309
            D     + L  G  V +SDT G             + T  EV+ AD+IL +++I     
Sbjct: 227 LDPTMRQVTLPSGRKVILSDTVGFISDLPHGLVAAFRATLEEVDAADIILHVRDIAHIDS 286

Query: 310 -----------SKKEISFPKNIDFIFIGTKSD----------LYSTYTEEYDHLISSFTG 348
                      S   I    +   I +  K D          L  T        +S+ +G
Sbjct: 287 EAQKADVHEVLSDMGIDPEIDDRVIEVLNKIDALDEESRAAILVQTGRNPRAVAVSALSG 346

Query: 349 EGLEELINKIKSILSNKFKKLPFSI-------PSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           EG+++L   +   ++   + +  S+        +       + +     E A L+     
Sbjct: 347 EGIDDLDRLLDQRMNVNRQVVDLSVGLGDGAALAWLYARSEVLERRDDEERAHLHVSIDP 406

Query: 402 LDII 405
           +D+ 
Sbjct: 407 VDLA 410


>gi|255693723|ref|ZP_05417398.1| GTP-binding protein HflX [Bacteroides finegoldii DSM 17565]
 gi|260620474|gb|EEX43345.1| GTP-binding protein HflX [Bacteroides finegoldii DSM 17565]
          Length = 418

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 82/206 (39%), Gaps = 17/206 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q       R    ++ ++G++N GKS++ N L+K +V
Sbjct: 181 EMDRRIILNRMSLLKERLADIDKQKATQRKNRGRMIRVALVGYTNVGKSTIMNLLSKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + +E     +SDT G          +  K T  EV  ADL++ 
Sbjct: 241 -FAENKLFATLDTTVRKVIIENLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLVH 299

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           + +I+    +++I                 I +  K D Y TY E+    ++  T E L 
Sbjct: 300 VVDISHPGFEEQIEVVNKTLAEIGGGGKPMILVFNKIDAY-TYIEKASDDLTPRTKENLT 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKR 378
             + ++      K +     I + +R
Sbjct: 359 --LEELMKTWMAKMEDNCLFISARER 382


>gi|149369521|ref|ZP_01889373.1| GTP-binding protein HflX [unidentified eubacterium SCB49]
 gi|149356948|gb|EDM45503.1| GTP-binding protein HflX [unidentified eubacterium SCB49]
          Length = 403

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 70/180 (38%), Gaps = 15/180 (8%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L       I +    +    G   ++ ++G++N GKS+L N ++
Sbjct: 161 ETEIETDRRIVRDRISLLKKKMLAIDKQMATQRGNRGSLIRVALVGYTNVGKSTLMNVIS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K DV    +    T D     + +      ++DT G          E  K T  EV  AD
Sbjct: 221 KSDV-FAENKLFATLDTTVRKVVIGNLPFLLTDTVGFIRKLPTQLVESFKSTLDEVREAD 279

Query: 301 LILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           L+L + +I+ +                   +   + +  K D Y   T + D L++  T 
Sbjct: 280 LLLHVVDISHESFEDHIDSVNVILNEIKSSDKPVLMVFNKIDAYEPETIDADDLVTEKTK 339


>gi|88801541|ref|ZP_01117069.1| GTP-binding protein HflX [Polaribacter irgensii 23-P]
 gi|88782199|gb|EAR13376.1| GTP-binding protein HflX [Polaribacter irgensii 23-P]
          Length = 402

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 107/299 (35%), Gaps = 31/299 (10%)

Query: 117 AFENGKIDLLEAESLADLISSE-------------TEMQRRLSMEGMSGELSSLYGQWID 163
           A  + ++   +  ++  ++  +                Q   +   +           + 
Sbjct: 82  AIFDDELSPAQIRNIEKVLDCKILDRTNLILDIFAQRAQSSSARTQVELAQCQYLLPRLT 141

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YK 221
           +L       +  +      + +  + + ++ D + +       I +    +    G   +
Sbjct: 142 RLWTHLDKQKGGIGMRGPGETEIETDRRIIRDKIDVLKKKLLTIDKQMAVQRKNRGKMVR 201

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G++N GKS+L N ++K DV    +    T D     + ++     ++DT G     
Sbjct: 202 IALVGYTNVGKSTLMNVISKSDV-FAENKLFATLDTTVRKVVIKNIPFLMTDTVGFIRKL 260

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFIGTK 328
                E  K T  EV  ADL+L + +I+               ++I        + +  K
Sbjct: 261 PTQLVESFKSTLDEVREADLLLHVIDISHPNFEDHIASVNSVLQDIKCADKPTLM-VFNK 319

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
            D +   T + D L++  T E    L +  K+ +++K +   F    +K +L    + V
Sbjct: 320 IDAFVHETIKEDDLVTEKTKEHY-TLQDWKKTWMNDKEQTSIFISALNKENLEDFKEVV 377


>gi|288929501|ref|ZP_06423345.1| GTP-binding protein HflX [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329006|gb|EFC67593.1| GTP-binding protein HflX [Prevotella sp. oral taxon 317 str. F0108]
          Length = 414

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 84/196 (42%), Gaps = 17/196 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L+ +  LK  + + I + K  +    G   ++ ++G++N GKS++ N LAK +
Sbjct: 181 EMDRRIILSRMALLKERL-AEIDKQKTTQRKNRGRMVRVALVGYTNVGKSTIMNLLAKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + +E     ++DT G          +  K T  EV  ADL++
Sbjct: 240 V-FAENKLFATLDTTVRKVVVENLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLV 298

Query: 304 LLKEINS---KKEISFPK---------NIDFIFIGTKSDLYSTY-TEEYDHLISSFTGEG 350
            + +I+    +++I+  +         +   + +  K D Y+    +E D   ++     
Sbjct: 299 HVVDISHPDFEEQIAVVEKTLTELDCADKPSMIVFNKIDNYTFVKKDEDDLTPATKENMT 358

Query: 351 LEELINKIKSILSNKF 366
           L++L     + L++  
Sbjct: 359 LDDLKRTWMARLNDNC 374


>gi|91774320|ref|YP_567012.1| small GTP-binding protein [Methanococcoides burtonii DSM 6242]
 gi|91713335|gb|ABE53262.1| GTP-binding domain protein [Methanococcoides burtonii DSM 6242]
          Length = 413

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 28/211 (13%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN--GYK-IVILGHSNAGKSSLFNALAK 241
           ++   ++V   I+ ++N+I +    G+     R+  G+  + + G++NAGKS+LF +L K
Sbjct: 153 EDSYEQDVKKRIVRIRNEIHNSCKGGESLRSFRHERGFSLVALAGYTNAGKSTLFQSLVK 212

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           + V  V D+  TT    T  L ++   V ++DT G  E       +  + T  E+  AD+
Sbjct: 213 EGV-EVEDMLFTTLSPTTRSLSIKQRRVLLTDTVGFIEDLPHWMVDAFRSTLDEIFLADV 271

Query: 302 ILLLKEINSKKEISFPK-------------NIDFIFIGTKSDLYSTYTEEYDHLISSF-- 346
           ILL+ +++   ++   K               + + +  K+D+      E      S+  
Sbjct: 272 ILLVVDMSDPLDVIRQKLVVSHDIFWKRTEGAEIVAVLNKADMVDPDDLERKVDAISYLA 331

Query: 347 ---------TGEGLEELINKIKSILSNKFKK 368
                    +G+G E L++ I   L +  + 
Sbjct: 332 PHLVLVSASSGDGFEVLLDTIYENLPHWSRS 362


>gi|149005789|ref|ZP_01829528.1| GTP-binding protein HflX [Streptococcus pneumoniae SP18-BS74]
 gi|307126868|ref|YP_003878899.1| GTP-binding proten HflX [Streptococcus pneumoniae 670-6B]
 gi|147762729|gb|EDK69689.1| GTP-binding protein HflX [Streptococcus pneumoniae SP18-BS74]
 gi|306483930|gb|ADM90799.1| GTP-binding proten HflX [Streptococcus pneumoniae 670-6B]
 gi|332077099|gb|EGI87561.1| GTP-binding proten HflX [Streptococcus pneumoniae GA17545]
          Length = 412

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 20/214 (9%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +  + DI      +  + +  +   +  + +KI ++G++NAGKS++ N L  K      +
Sbjct: 169 RNQITDIERQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNILTSKTQYEADE 228

Query: 250 IPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           +   T D  T  + L G   V ++DT G  +          K T  E ++ DL++ + + 
Sbjct: 229 LFA-TLDATTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDA 287

Query: 309 N-------SKKEISFPKNIDFIFI-----GTKSDLYSTYTE-EYDHLISSFTGEGLEE-- 353
           +        K  +S  K++D   I       K+DL   +T  +  + + S   E   E  
Sbjct: 288 SNPYHEEHEKTVLSIMKDLDMEDIPHLTLYNKADLVEDFTPTQTPYTLISAKSEDSRENL 347

Query: 354 ---LINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
              L++KIK I      ++PFS       L  ++
Sbjct: 348 QALLLDKIKEIFEAFTLRVPFSKSYKIHDLESVA 381


>gi|86605404|ref|YP_474167.1| GTP-binding domain-containing protein [Synechococcus sp. JA-3-3Ab]
 gi|86553946|gb|ABC98904.1| GTP-binding domain protein [Synechococcus sp. JA-3-3Ab]
          Length = 414

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 16/172 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
            +   + L     L+ +  +         +    + I + G  N GKS++ NAL  ++  
Sbjct: 15  CWDHWQSLASRRDLQPEFRAL--STLRKRLTARLFSIAVFGLVNRGKSAVLNALTGEERL 72

Query: 246 IVTDIPGTTRDVLTIDLDLE-GYL--VKISDTAGIRETDDIVEKEGIKR-TFLEVENADL 301
            V  + G T+   ++    E G    VK+ DT G+ E     E E  ++  +    +ADL
Sbjct: 73  KVGPLNGVTQQPQSLLWQPEPGIPWRVKLVDTPGLNEV----EGEAREQLAWDVARSADL 128

Query: 302 ILLLK--EINSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
           I+ +   ++   +  +  +        + +  K DLYS    +      S  
Sbjct: 129 IVFVIATDLTQLEYQALSELRTLYKPILLVLNKCDLYSEAELQAICAQISRH 180


>gi|62898385|dbj|BAD97132.1| pseudoautosomal GTP-binding protein-like protein variant [Homo
           sapiens]
          Length = 403

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 108/298 (36%), Gaps = 32/298 (10%)

Query: 136 SSETEMQR-RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           ++ T+  R ++++  M              + H+   + +       E       + +  
Sbjct: 98  NARTKEARLQVALAEMP----LHRSNLKRDVAHLYRGVGSRYIMGSGESFMQLQQRLLRE 153

Query: 195 DILFLKNDISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV-TDI 250
               ++  +     +    +     R    I ++G++N GK++L  AL   D AI   D 
Sbjct: 154 KEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIKALTG-DAAIQPRDQ 212

Query: 251 PGTTRDVLTIDLDLEGYLVKI-SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T DV      L   +  +  DT G          E    T  +V ++DLIL +++++
Sbjct: 213 LFATLDVTAHAGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDVAHSDLILHVRDVS 272

Query: 310 SKK---------------EISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLE 352
             +               ++  P     + +  K DL   Y  TE     +S+  G GL+
Sbjct: 273 HPEAELQKCSVLSTLRGLQLPAPLLDSMVEVHNKVDLVPGYSPTEPNVVPVSALRGHGLQ 332

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           EL  ++ + +     +   ++    R     +Q     + A++ E D   +  A ++R
Sbjct: 333 ELKAELDAAVLKATGRQILTL----RVRLAGAQLSWLYKEATVQEVDVIPEDGAADVR 386


>gi|313200697|ref|YP_004039355.1| ferrous iron transport protein b [Methylovorus sp. MP688]
 gi|312440013|gb|ADQ84119.1| ferrous iron transport protein B [Methylovorus sp. MP688]
          Length = 594

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 81/191 (42%), Gaps = 19/191 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I +LG  N GKS+ FN ++    A V + PG T D++   L L G++V+I D  GI + 
Sbjct: 3   RIALLGMPNTGKSTFFNRVSGAS-ARVGNWPGITVDLMAAKLLLGGHIVEIIDLPGIYDL 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISF---PKNIDFIFIGTKSDLYST 334
               + E + R FLE  + DL +++    +I+ +  ++       +  I +   SD    
Sbjct: 62  HGFSDDESVVRHFLENNDVDLAVIVLNGSQIDRQLSLALQVKALGLPCILLLNMSD---- 117

Query: 335 YTEEYDHLISSFTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRY 389
              E      +F   G+++ +   +  I +      P ++    RHL       ++    
Sbjct: 118 ---EAKKSGITFNLPGMQQQLQMPVMQISAKHGNGCPEALKEAARHLAEQHPSPAEIREQ 174

Query: 390 LEMASLNEKDC 400
           L+     E   
Sbjct: 175 LKNDDTIENQM 185


>gi|254172541|ref|ZP_04879216.1| GTP-binding protein [Thermococcus sp. AM4]
 gi|214033470|gb|EEB74297.1| GTP-binding protein [Thermococcus sp. AM4]
          Length = 188

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 38/187 (20%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----------DLEGY- 267
            K+ I+G  N GKS+L NAL    V+ V ++PGTT+ ++                L G  
Sbjct: 2   IKVAIIGAENVGKSTLMNALLGGRVSEVENLPGTTKGIIRRRFGKLKIPKGMKNPLGGAD 61

Query: 268 LVKISDTAGIRE-----TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK---- 318
              + DTAG+ +        ++ +E  K    E+ +AD+I+ + +          K    
Sbjct: 62  EFVLIDTAGLFDPRLELRGKVLSEEKFKELIDEIVSADIIIHMVDATVGLHRGMEKLHHM 121

Query: 319 -----NIDFIFIGTKSDL------------YSTYTEEYDHLISSFTGEGLEELINKIKSI 361
                +   I +  K DL                 E+    +S  T EG  EL+ +I  +
Sbjct: 122 LKMRYDKPIIVVINKIDLVPRERVEELREIIKKRLEQEPLALSLVTYEGFNELLERIAHM 181

Query: 362 LSNKFKK 368
                 +
Sbjct: 182 AMYAGGR 188


>gi|312137475|ref|YP_004004812.1| small gtp-binding protein [Methanothermus fervidus DSM 2088]
 gi|311225194|gb|ADP78050.1| small GTP-binding protein [Methanothermus fervidus DSM 2088]
          Length = 335

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 90/234 (38%), Gaps = 31/234 (13%)

Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE--- 214
             + I  ++ ++      + FS  ++      +E+   I  +  +I   +      +   
Sbjct: 94  INRAIKIISQLKREYTKRIKFSSPKEAYKL-RREIYGRISSVIKEIKDDLDFLDFAKNRL 152

Query: 215 -----IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
                I  +   +VI G+ N GKS+L   L   +   V + P TT+ +      +    +
Sbjct: 153 KNMPTIDFDAVTVVIAGYPNVGKSTLLRKLTGAN-PEVAEYPFTTKGIQIGYRKIGWGKL 211

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVEN-ADLILLLKEINSKKEISFPK---------- 318
           ++ DT G+ +       E   +  + +EN ADL++ + + +        K          
Sbjct: 212 QVVDTPGLLDRPVDKMNEIELQALVALENLADLMIFIFDPSETCGYPLEKQFALYKNLRK 271

Query: 319 --NIDFIFIGTKSDLYSTY--------TEEYDHLISSFTGEGLEELINKIKSIL 362
             N+  I +  K DL              E   L+S+  G+GL++LI K++ + 
Sbjct: 272 VFNVPIISVFNKIDLVENLKYLKKYINKVENPILVSATEGKGLKKLIAKLEELY 325


>gi|253998623|ref|YP_003050686.1| ferrous iron transport protein B [Methylovorus sp. SIP3-4]
 gi|253985302|gb|ACT50159.1| ferrous iron transport protein B [Methylovorus sp. SIP3-4]
          Length = 594

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 81/191 (42%), Gaps = 19/191 (9%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I +LG  N GKS+ FN ++    A V + PG T D++   L L G++V+I D  GI + 
Sbjct: 3   RIALLGMPNTGKSTFFNRVSGAS-ARVGNWPGITVDLMAAKLLLGGHIVEIIDLPGIYDL 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISF---PKNIDFIFIGTKSDLYST 334
               + E + R FLE  + DL +++    +I+ +  ++       +  I +   SD    
Sbjct: 62  HGFSDDESVVRHFLENNDVDLAVIVLNGSQIDRQLSLALQVKALGLPCILLLNMSD---- 117

Query: 335 YTEEYDHLISSFTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRY 389
              E      +F   G+++ +   +  I +      P ++    RHL       ++    
Sbjct: 118 ---EAKKSGITFNLPGMQQQLQMPVMQISAKHGNGCPEALKEAARHLAEQHPSPAEIREQ 174

Query: 390 LEMASLNEKDC 400
           L+     E   
Sbjct: 175 LKNDDTIENQM 185


>gi|240103488|ref|YP_002959797.1| GTP-binding protein [Thermococcus gammatolerans EJ3]
 gi|239911042|gb|ACS33933.1| GTP-binding protein [Thermococcus gammatolerans EJ3]
          Length = 188

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 38/187 (20%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL----------- 268
            K+ I+G  N GKS+L NAL    V+ V D+PGTT+ ++                     
Sbjct: 2   IKVAIIGAENVGKSTLMNALLGGKVSEVEDLPGTTKGIIRKRFGKLKIPKGMKNPFGGAD 61

Query: 269 -VKISDTAGIRE-----TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK---- 318
              + DTAG+ +        ++ +E  +    E+ +AD+I+ + +          K    
Sbjct: 62  EFVLIDTAGLFDPRLELRGKVLSEERFRELMEEIVSADIIIHMVDATVGLHRGMEKLHHM 121

Query: 319 -----NIDFIFIGTKSDLYS------------TYTEEYDHLISSFTGEGLEELINKIKSI 361
                    I +  K DL S               E+    +S  T EG  EL+ +I  +
Sbjct: 122 LKMRYEKPIIVVINKIDLVSRERVEELRKIIKKRLEQEPLALSLVTYEGFNELLERIAHM 181

Query: 362 LSNKFKK 368
                + 
Sbjct: 182 AMYAGRH 188


>gi|238755903|ref|ZP_04617231.1| GTP-binding protein hflX [Yersinia ruckeri ATCC 29473]
 gi|238705862|gb|EEP98251.1| GTP-binding protein hflX [Yersinia ruckeri ATCC 29473]
          Length = 426

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 114/358 (31%), Gaps = 58/358 (16%)

Query: 70  PSPESFTGEDSAE-----FHVHGGIAVV-NGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           P P+ F GE  AE         G   V+ +  L    +    RL                
Sbjct: 52  PHPKYFVGEGKAEEIADAVKASGASVVLFDHALSAAQERNLERLCE-------------C 98

Query: 124 DLLEAESLADLISSETEMQR----RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            +++   L   I ++         ++ +  +    + L   W    TH+           
Sbjct: 99  RVIDRTGLILDIFAQRARTHEGKLQVELAQLRHIATRLVRGW----THLERQKGGIGLRG 154

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLF 236
             E       + + + I  + N +     Q +     RN      + ++G++NAGKSSLF
Sbjct: 155 PGETQLETDRRLLRDRISLILNRLERVAKQREQNRRARNRAEIPTVSLVGYTNAGKSSLF 214

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLE 295
           N +   DV    D    T D     +++       ++DT G             K T  E
Sbjct: 215 NRITSADV-YAADKLFATLDPTLRRINVADVGDTVLADTVGFIRHLPHDLVAAFKATLQE 273

Query: 296 VENADLILLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEYD-- 340
              A L+L + +    +             EI     I  + +  K D+   +    D  
Sbjct: 274 TRQASLLLHVIDAADPRVSENVAAVETVLAEIE-ADEIPTLLVMNKIDMLDDFEPRIDRN 332

Query: 341 -------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
                    +S+ TG G+  L   +   LS +      S+P      R  ++  Q + 
Sbjct: 333 EENLPIRVWLSAKTGAGIPLLFQALTERLSGEIAHYELSLPPQAGRLRSRFYQLQAIE 390


>gi|238018239|ref|ZP_04598665.1| hypothetical protein VEIDISOL_00063 [Veillonella dispar ATCC 17748]
 gi|237864710|gb|EEP66000.1| hypothetical protein VEIDISOL_00063 [Veillonella dispar ATCC 17748]
          Length = 417

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276
           N   I   G  NAGKS+L N L  + V++V+++ GTT D ++  +++     V I+DTAG
Sbjct: 8   NRVHIGFFGRCNAGKSTLINMLTDQPVSLVSEVAGTTTDPVSKSMEILPLGPVVITDTAG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           I +T ++      ++T   V+  +L + +   + + 
Sbjct: 68  IDDTTELGTLRM-EKTEEVVKKINLAVYVLRTDEEP 102


>gi|18312175|ref|NP_558842.1| hypothetical protein PAE0782 [Pyrobaculum aerophilum str. IM2]
 gi|18159611|gb|AAL63024.1| conserved protein (possible hflX) [Pyrobaculum aerophilum str. IM2]
          Length = 386

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 97/242 (40%), Gaps = 37/242 (15%)

Query: 149 GMSGELSSLYGQWIDKLTHI-----RSFIEADLDF-SEEEDVQNFSSKEVLNDILFLKND 202
            +  +L     +   +L  +     R+ +   L F    E V +   + ++  I  ++  
Sbjct: 106 SLESKLQIELARLRYELPKVKEYLRRAKMGEQLGFMGAGEYVIDAYYRHMVRRISTIRRK 165

Query: 203 ISSHISQGKLGEIIRNG----YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +   I +G+   I++       ++V+ G+++AGK++LFN+L  ++  +V   P  T +  
Sbjct: 166 LEE-IKRGRAMHIMKRKEKGVPEVVLTGYTSAGKTTLFNSLVNENK-LVDGRPFATLETY 223

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
           +  LDL G  + ++DT G  +    +  E    T  E+ +AD ILL+ + +   E    K
Sbjct: 224 SRALDLWGKRIVLTDTIGFIDDLPPLLIESFYSTLQEIIDADRILLVIDGSEPLEEITRK 283

Query: 319 --------------NIDFIFIGTKSDLYSTYTEE-----------YDHLISSFTGEGLEE 353
                             I +  K D  S                +   +S+ TG G+E 
Sbjct: 284 VETSVKTLGEVGIGRERIIPVLNKVDKISVEKVRDIRRGLEKYFTWFVPVSALTGFGIEA 343

Query: 354 LI 355
           L 
Sbjct: 344 LK 345


>gi|310658631|ref|YP_003936352.1| GTP-binding protein hflx [Clostridium sticklandii DSM 519]
 gi|308825409|emb|CBH21447.1| GTP-binding protein hflX [Clostridium sticklandii]
          Length = 432

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 127/317 (40%), Gaps = 34/317 (10%)

Query: 123 IDLLEAESLADLISSETEMQR----RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           +D+++  +L   I ++  + R    ++ +      L  L G    +++ +   I      
Sbjct: 106 LDIIDRTALILDIFAKRALSREGKLQVELAQYKYRLPRLIG-VGKEMSRLGGGIGTKGPG 164

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            ++ +      +E + DI     +I  +    +   +  N   + ++G++N+GKS+L N 
Sbjct: 165 EKKLETDKRHIRERIYDIQRELKEIKKNREIQRSKRLKSNLPIVALVGYTNSGKSTLLNK 224

Query: 239 LAKKDV-------AIVTDIPGTTRDV-LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           L +            V D+   T DV L   +        I+DT G          E  K
Sbjct: 225 LIQSHREYSADKDVFVKDMLFATLDVSLRKAILPSNKEYLITDTVGFVSDLPHYLVEAFK 284

Query: 291 RTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSD-----LY 332
            T  EV  ADL+L + + +++             KEI    +   I++  K+D     L 
Sbjct: 285 ATLEEVSYADLLLHVVDSSNEHFNLQIDTTLGVLKEIG-AADKPMIYVFNKADKVNYELD 343

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS-HKRHLYHLSQTVRYLE 391
               +EY   IS+ TG   E+L+ KI+  +++  KK+   IP  +   +  L +   + E
Sbjct: 344 YKPKDEYVF-ISAKTGYNNEQLLQKIECHINSNLKKVKLLIPFSNGEVINSLHKKYNFEE 402

Query: 392 MASLNEKDCGLDIIAEN 408
             S       +DI  E+
Sbjct: 403 NYSEEGILVQIDITEED 419


>gi|110835063|ref|YP_693922.1| GTP-binding protein HflX [Alcanivorax borkumensis SK2]
 gi|110648174|emb|CAL17650.1| GTP-binding protein HflX [Alcanivorax borkumensis SK2]
          Length = 480

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 104/290 (35%), Gaps = 25/290 (8%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T   R    +  +    S L   W   L   +  I        + +      ++ + 
Sbjct: 144 RARTHEGRLQVELAQLRHLSSRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDRIR 202

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +    +QG+          I ++G++NAGKS+LFNA+   DV  V D    T
Sbjct: 203 GIESRLEKVRKQRAQGRRARQRSETPLISLVGYTNAGKSTLFNAITTGDV-YVADQLFAT 261

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     + + G     ++DT G          +  + T  E  NA+L+L + + ++++ 
Sbjct: 262 LDPTLRKVKVPGVGPAILADTVGFIRHLPHRLVQAFRATLEETVNANLLLHVTDCSAEER 321

Query: 313 -----------EISFPKNIDFIFIGTKSD--------LYSTYTEEYDHLISSFTGEGLEE 353
                      E      +  + +  K D            + + +   +S+ TG+G + 
Sbjct: 322 DNNVVAVNEVLEEIGGDKLPVLHVYNKVDNLDQPPRLERDEHGQPWRVWVSAQTGDGFDL 381

Query: 354 LINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLEMASLNEKDCGL 402
           L + I   L+  +      +P+   R    L +    LE  + N  D  L
Sbjct: 382 LFDAIAERLAAGWVDCWVRLPASAGRLRARLHEAGEVLEEQTGNNGDMLL 431


>gi|148267794|ref|YP_001246737.1| GTP-binding protein, HSR1-related [Staphylococcus aureus subsp.
           aureus JH9]
 gi|147740863|gb|ABQ49161.1| GTP-binding protein, HSR1-related [Staphylococcus aureus subsp.
           aureus JH9]
          Length = 412

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 99/261 (37%), Gaps = 21/261 (8%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 180 NEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 298

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELIN 356
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L+ 
Sbjct: 299 YRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVK 358

Query: 357 KI-KSILSNKFKKLPFSIPSH 376
            +    +  +      +I ++
Sbjct: 359 TLFIDEIKRQLTYYDETIATN 379


>gi|33865612|ref|NP_897171.1| hypothetical protein SYNW1078 [Synechococcus sp. WH 8102]
 gi|33632782|emb|CAE07593.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 531

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 17/229 (7%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           ++  +     + +  ++ R    +V+ G  ++GK+SL  AL +  V  V    G+TR   
Sbjct: 113 VRESLRQERERVEQ-DLARGDLVVVVFGTGSSGKTSLIRALLQDMVGDVAAAMGSTRSTP 171

Query: 259 TIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-KEIS 315
           +  L L+G    +++ DT GI E  D       +R   +   ADL+L++ + + +  E++
Sbjct: 172 SYRLRLKGMERGLRLVDTPGILEAGDGGLNRE-ERARQQAVRADLLLVVVDGDLRSSEMT 230

Query: 316 FPK-----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
             +         + +  K DL     E     +     EGL      + +         P
Sbjct: 231 VLRTLAGLGKRLLLVLNKRDLRGAEEERRLLQLLRSRCEGL------LPAADVVACSAAP 284

Query: 371 FSIPSH-KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
            +IP   +R L    +    L+  +      G ++IA+N+ L    L +
Sbjct: 285 QTIPRPGERPLQPAPEVNELLQRLATVLHADGEELIADNILLQCRQLDQ 333


>gi|147673365|ref|YP_001218617.1| putative GTPase HflX [Vibrio cholerae O395]
 gi|262166926|ref|ZP_06034646.1| GTP-binding protein HflX [Vibrio cholerae RC27]
 gi|146315248|gb|ABQ19787.1| GTP-binding protein HflX [Vibrio cholerae O395]
 gi|227012204|gb|ACP08414.1| GTP-binding protein HflX [Vibrio cholerae O395]
 gi|262024631|gb|EEY43312.1| GTP-binding protein HflX [Vibrio cholerae RC27]
          Length = 429

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 117/344 (34%), Gaps = 53/344 (15%)

Query: 70  PSPESFTGE----DSAE-FHVHGGIAVV-NGIL-----EELAKMPNLRLANPGEFSRRAF 118
           P P+ F GE    + AE   +HG   V+ N  L       L ++   R+ +        F
Sbjct: 52  PHPKYFVGEGKAQEIAEAVQMHGANVVIFNHALSPAQERNLERLCQCRVIDRTGLILDIF 111

Query: 119 ENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
                             + T E + ++ +  +    + L   W   L   +  I     
Sbjct: 112 AQ---------------RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGP 155

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
              + +      +E +  IL     ++    QG+          I ++G++NAGKS+LFN
Sbjct: 156 GETQLETDRRLLRERIKAILRRLEKVAKQREQGRRARSRAEIPTISLVGYTNAGKSTLFN 215

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEV 296
            + +  V    D    T D     +DL       ++DT G             K T  E 
Sbjct: 216 RITEAGV-YAADQLFATLDPTLRKIDLVDVGPAVLADTVGFIRHLPHDLVAAFKATLQET 274

Query: 297 ENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYD--- 340
           + AD++L + + + +             +EI     +  + +  K D     +   +   
Sbjct: 275 QEADILLHVVDASDERFRENIQAVETVLQEID-AHEVPTLLVMNKIDNLEEQSPRIERDD 333

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                   IS+  G G E L   +   L+++  +    IP   +
Sbjct: 334 EGVPRVVWISAMQGAGTELLFEALSERLASQVVEHHLRIPPRHQ 377


>gi|332202549|gb|EGJ16618.1| GTP-binding proten HflX [Streptococcus pneumoniae GA41317]
          Length = 412

 Score = 68.7 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 101/266 (37%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +    +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESITFKIGLIGYTNAGKSTIMNILTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------- 309
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + +       
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 310 SKKEISFPKNIDFIFI-----GTKSDLYSTYTE-EYDHLISSFTGEGLEE-----LINKI 358
            K  +S  K++D   I       K+DL   +T  +  + + S   E   E     L++KI
Sbjct: 296 EKTVLSIMKDLDMEDIPHLTLYNKADLVEDFTPTQTPYTLISAKSEDSRENLQALLLDKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 356 KEIFEAFTLRVPFSKSYKIHDLESVA 381


>gi|319934881|ref|ZP_08009326.1| GTP-binding protein hflX [Coprobacillus sp. 29_1]
 gi|319810258|gb|EFW06620.1| GTP-binding protein hflX [Coprobacillus sp. 29_1]
          Length = 419

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 23/226 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   ++  + ++ S + Q +    +R   +   + ++G++N+GKSSL N    K
Sbjct: 164 ELDRRVIHRQLVQARRELQSIVKQRQTQRQLRKRNQQKVVCLVGYTNSGKSSLLNYFTDK 223

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V    D+   +    +  + L+G+  + +SDT G          +  + T  EV+ ADL
Sbjct: 224 KV-FQEDMLFASLQTASRKVTLKGHKEIIMSDTVGFINQLPHHLVQAFRSTLEEVKEADL 282

Query: 302 ILLLKEINSK------------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI----SS 345
           +L + + +S              E    K+   I++  K D    Y     H      S 
Sbjct: 283 LLHVVDSSSAYSDIQIETTQQVLEALGVKDTPVIYVYNKVD-KDRYAFLQPHQPYVFVSV 341

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL-YHLSQTVRYL 390
                L++L   +   L   ++ +   IP     +   + QT  ++
Sbjct: 342 KEQINLDKLEELMIETLFKDYELIELYIPYDHGEIFQQIQQTYEFI 387


>gi|329942586|ref|ZP_08291396.1| GTP-binding proten HflX [Chlamydophila psittaci Cal10]
 gi|332287216|ref|YP_004422117.1| GTP-binding protein [Chlamydophila psittaci 6BC]
 gi|313847810|emb|CBY16801.1| putative GTP-binding protein [Chlamydophila psittaci RD1]
 gi|325506512|gb|ADZ18150.1| GTP-binding protein [Chlamydophila psittaci 6BC]
 gi|328815496|gb|EGF85484.1| GTP-binding proten HflX [Chlamydophila psittaci Cal10]
 gi|328914464|gb|AEB55297.1| GTP-binding protein HflX [Chlamydophila psittaci 6BC]
          Length = 462

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 79/229 (34%), Gaps = 22/229 (9%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
             K            +  ++ ++     +E ++ +      +     + +  +  R    
Sbjct: 170 RQKSGGGSGGGFVKGEGEKQIELDRRMIRERIHKLTLDLKSVEKQRKERRKAKEKRGIPS 229

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
             ++G++N+GKS+L N L   +   V D    T D  T    L  G  V ++DT G    
Sbjct: 230 FALIGYTNSGKSTLLNLLTSAE-TYVEDKLFATLDPKTRRCVLPSGQRVLVTDTVGFIRK 288

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTK 328
                    K T     + D++L + + +        +            +   I +  K
Sbjct: 289 LPHTLVAAFKSTLEAALHEDVLLHVVDASHPLAFEHIETTKEILKELGVDHPKIITVLNK 348

Query: 329 SDLYS--------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
            D                   LIS+ TGEG++ L+  +  +++  F ++
Sbjct: 349 IDALPHGKASTKLRLLSPRAVLISAKTGEGIQNLLEAMTDVITEGFPEV 397


>gi|298492203|ref|YP_003722380.1| small GTP-binding protein ['Nostoc azollae' 0708]
 gi|298234121|gb|ADI65257.1| small GTP-binding protein ['Nostoc azollae' 0708]
          Length = 462

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 15/184 (8%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +K +I + I+   L ++  N  +I   G  + GKS++ N+L  + +     + G T+   
Sbjct: 48  VKPEIETLIAT--LNKLDSNVVRIAAFGLVSRGKSAVLNSLLGEKILQTGPLNGVTQWPR 105

Query: 259 TIDLDLEGYLVK-ISDTAGIRETDDIVEKEGIKR-TFLEVENADLILLLKEINSKKE--- 313
           ++     G ++  + DT G+    D +E E   +        ADLIL +   +  +    
Sbjct: 106 SVRWKPGGKVLVELIDTPGL----DEIEGESRAQMARDVARQADLILFVVSGDITRTEYQ 161

Query: 314 ---ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI-KSILSNKFKKL 369
                       I +  K DLY     +  +      G G       +   I+    +  
Sbjct: 162 GLLELRKAQKPLILVFNKVDLYPEIDRKAIYKNLQQLGAGNLHNKPLLPDEIVMIAAEPA 221

Query: 370 PFSI 373
           P  +
Sbjct: 222 PIEV 225


>gi|315922515|ref|ZP_07918755.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696390|gb|EFS33225.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 356

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 67/168 (39%), Gaps = 14/168 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q       R    ++ ++G++N GKS++ N L+K +V
Sbjct: 181 EMDRRIILNRMSLLKERLADIDKQKATQRKNRGRMIRVALVGYTNVGKSTMMNLLSKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + ++     +SDT G          E  K T  EV  ADL++ 
Sbjct: 241 -FAENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTDLVESFKSTLDEVREADLLVH 299

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYD 340
           + +I+    +++I                 I +  K D Y+   +  D
Sbjct: 300 VVDISHPGFEEQIEVVNKTLAEIGGSGKPMILVFNKIDAYTYVEKAPD 347


>gi|149020286|ref|ZP_01835178.1| GTP-binding protein HflX [Streptococcus pneumoniae SP23-BS72]
 gi|147930588|gb|EDK81570.1| GTP-binding protein HflX [Streptococcus pneumoniae SP23-BS72]
          Length = 412

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 20/214 (9%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +  + DI      +  + +  +   +  + +KI ++G++NAGKS++ N L  K      +
Sbjct: 169 RNQITDIERQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNILTSKTQYEADE 228

Query: 250 IPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           +   T D  T  + L G   V ++DT G  +          K T  E ++ DL++ + + 
Sbjct: 229 LFA-TLDATTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDA 287

Query: 309 N-------SKKEISFPKNIDFIFI-----GTKSDLYSTYTE-EYDHLISSFTGEGLEE-- 353
           +        K  +S  K++D   I       K+DL   +T  +  + + S   E   E  
Sbjct: 288 SNPYHEEHEKTILSIMKDLDMEDIPHLTLYNKADLVEDFTPTQTPYTLISAKSEDSRENL 347

Query: 354 ---LINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
              L++KIK I      ++PFS       L  ++
Sbjct: 348 QALLLDKIKEIFEAFTLRVPFSKSYKIHDLESVA 381


>gi|318042374|ref|ZP_07974330.1| ferrous iron transport protein B [Synechococcus sp. CB0101]
          Length = 599

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 29/202 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + +LG  N GKS+LFN L      I  + PG T D++  DL+L G+ +++ D  GI +  
Sbjct: 4   VAVLGMPNTGKSTLFNRLTGHHAHI-GNWPGLTVDLMQADLELAGHHLQLIDLPGIYDLR 62

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSD----- 330
            + + E + R FLE    DL+L++   +                   +     +D     
Sbjct: 63  GLSDDEAVVRRFLEQTPVDLVLVVLNASQLDRQLRLALQVQQLGCPAVLALNMADEAARF 122

Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                    S    +    +S+   +GL+ L + + + L    +    S+P         
Sbjct: 123 GVRINASALSEAVGQPVLPLSAKYRQGLDTLQHALVAQL-ETSEAGAASVP--------- 172

Query: 384 SQTVRYLEMASLNEKDCGLDII 405
            Q    L     +      D++
Sbjct: 173 EQLEERLAAMDADLDGAMADLV 194


>gi|284044305|ref|YP_003394645.1| GTP-binding protein Era [Conexibacter woesei DSM 14684]
 gi|283948526|gb|ADB51270.1| GTP-binding protein Era [Conexibacter woesei DSM 14684]
          Length = 300

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 22/168 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R+G+ + + G  N GKS+L NA+    VAIV+D P TTR  +        + + + D  G
Sbjct: 10  RSGF-VALAGRPNVGKSTLTNAIVGAKVAIVSDKPQTTRRAIRGVRTTPDHQLILVDLPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENA----------------D--LILLLKEINSKKEISFPK 318
           ++   D++ +    R   E+ +A                D  +  LLK       I+  K
Sbjct: 69  VQRPRDVLTERMQGRVESELRDADAALLLLNAEQGVGPGDRFIAALLKRAPVPVVIAVNK 128

Query: 319 NIDFIFIGTKSDLYSTYTEEY---DHLISSFTGEGLEELINKIKSILS 363
                   T   L +    E       IS+  G+G++ L++ +  +L 
Sbjct: 129 IDRCSKHETAVVLQAAADLEVADDIFPISARGGQGVQTLVDHLAGLLP 176


>gi|282916565|ref|ZP_06324323.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus D139]
 gi|283770369|ref|ZP_06343261.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus H19]
 gi|282319052|gb|EFB49404.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus D139]
 gi|283460516|gb|EFC07606.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus H19]
          Length = 412

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 101/265 (38%), Gaps = 25/265 (9%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 180 NEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 298

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEEL-- 354
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L  
Sbjct: 299 YRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDYASNRPASDLPNVFVSSKNDGDKLLVK 358

Query: 355 ---INKIKSILSNKFKKLPFSIPSH 376
              I++IK  L+   + +  +    
Sbjct: 359 TLFIDEIKRQLTYYDEAIATNNADR 383


>gi|254517950|ref|ZP_05130006.1| ferrous iron transporter B [Clostridium sp. 7_2_43FAA]
 gi|226911699|gb|EEH96900.1| ferrous iron transporter B [Clostridium sp. 7_2_43FAA]
          Length = 626

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 22/159 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GK+++FNAL       V + PG T D     ++ +    K+ D  GI  
Sbjct: 2   INVALVGNPNTGKTTVFNALTGSKQ-YVGNWPGVTIDKKFGFINKDM---KLVDLPGIYA 57

Query: 280 TDDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPK-----NIDFIFIGTKSDLYS 333
            D    +E I R FLE E+ D+I+ ++  IN ++ +         N   + +    D+  
Sbjct: 58  MDTYSNEEKIARAFLEYEDVDVIINVVDSINLERNLYLTTQLMQFNKPIVVLLNMIDIAK 117

Query: 334 TYTEEYDHL------------ISSFTGEGLEELINKIKS 360
                 DH             IS+ T EGL+ +   I  
Sbjct: 118 KRGINIDHNKLAKELGVTILPISAKTKEGLDNIEKTIIE 156


>gi|153871986|ref|ZP_02001009.1| GTPase [Beggiatoa sp. PS]
 gi|152071549|gb|EDN68992.1| GTPase [Beggiatoa sp. PS]
          Length = 300

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280
           + I+G  N GKS+L N L  K + I +  P TTR  L     L    +   DT GI +  
Sbjct: 11  VAIIGRPNVGKSTLLNYLLGKKLCITSRKPQTTRHRLLGIKTLGNTQIIYVDTPGIHQRQ 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKN-----IDFIFIGTKSDLYS 333
            + + +   +     +   D+I+ L E    ++++    K+        I    K D  +
Sbjct: 71  HNAMNRYLNRAAQGSMVGVDMIIWLVEALCWTEEDSYVLKSLAQLTAPVILGVNKIDKIN 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  +               IS+  G+ L++L  K+  +L       P    + +  
Sbjct: 131 DKKALLPYLQDVTLKHDFISVFPISAHKGDNLDKLEAKVIDLLPINALLFPEDQITDRTE 190

Query: 380 LYHLSQTVR 388
            +  ++ VR
Sbjct: 191 RFLCAEIVR 199


>gi|323496873|ref|ZP_08101905.1| GTPase HflX [Vibrio sinaloensis DSM 21326]
 gi|323318059|gb|EGA71038.1| GTPase HflX [Vibrio sinaloensis DSM 21326]
          Length = 429

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 109/302 (36%), Gaps = 30/302 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     ++    QG+          I ++G++NAGKS+LFN + +  V    D    T
Sbjct: 173 TILRRLEKVAKQREQGRRARSRAEIPTISLVGYTNAGKSTLFNRITEAGV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     +DL       ++DT G             K T  E + AD++L + + + ++ 
Sbjct: 232 LDPTLRKIDLSDVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASDERF 291

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                       EI     I  + +  K D         +           +S+  G+G+
Sbjct: 292 RENIQAVHDVLAEIE-ADEIPALVVMNKIDNLDGQNPRIERDDEGIPQSVWVSAMEGKGI 350

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           E L + +   L+++  +    IP   +H   L  T   ++     E D   +++  ++R+
Sbjct: 351 ELLFDALTERLASQMVEYQMRIPP--QHQGRLRSTFFQMKCIQREEYDQDGNLL-IDVRM 407

Query: 412 AS 413
             
Sbjct: 408 QQ 409


>gi|75907298|ref|YP_321594.1| small GTP-binding protein domain-containing protein [Anabaena
           variabilis ATCC 29413]
 gi|75701023|gb|ABA20699.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC
           29413]
          Length = 206

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 33/176 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS LFNAL    V  V++ PGTT +V      +    + + DT G+   
Sbjct: 39  QIALVGMPNVGKSVLFNALTGIYVT-VSNYPGTTVEVSRGLAQIGEQSITVIDTPGMYSL 97

Query: 281 DDIVEKEGIKRTFLEVE-------------------------NADLILLLKEINSKKEIS 315
             I E+E + R  L +E                          A L +LL        ++
Sbjct: 98  LPISEEEKVARDLLLLEPVAAVVHVVDAKNLGRMLPLTFQLIEAGLPILLA-------VN 150

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                    +  + DL     E     +++   +G++EL ++I S+L  +   +P 
Sbjct: 151 MMDEAHRWGLDLRPDLLEMELEVPVVCMAAALNQGIDELRHRIASLLPVQVAMIPA 206


>gi|90424082|ref|YP_532452.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris
           BisB18]
 gi|90106096|gb|ABD88133.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris
           BisB18]
          Length = 461

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 100/272 (36%), Gaps = 37/272 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E   ++ +  ++ + S L   W   L   R          E +       + + +
Sbjct: 141 RAKTKEGALQVELAHLNYQRSRLVRSWTH-LERQRGGFGFMGGPGETQI--EADRRLIGD 197

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  ++N+I       +L    R       + ++G++NAGKS+LFN L + +V     + 
Sbjct: 198 RISKIENEIKKVQGTRRLHRAGRQRVPYRVVALVGYTNAGKSTLFNRLTRAEVQAADMLF 257

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T    L       G    +SDT G             + T  EV  ADLIL +++I  +
Sbjct: 258 ATLDPTLRALTLPHGGKAMLSDTVGFISNLPTQLVAAFRATLEEVLEADLILHVRDIAHE 317

Query: 312 KEISFPKNI-----------------DFIFIGTKSDLYS----------TYTEEYDHLI- 343
              +   ++                   I +  K D ++              + +H   
Sbjct: 318 DADAQQDDVAAVLRQLGIDPEAGGGGRIIEVWNKIDRFAADELANLRNIAARRDPEHPCL 377

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
             S+ TGEG++ L+  I+  L+     L  SI
Sbjct: 378 LVSAVTGEGIDALLLAIEDRLAAARITLDLSI 409


>gi|300715041|ref|YP_003739844.1| GTP-binding protein HflX [Erwinia billingiae Eb661]
 gi|299060877|emb|CAX57984.1| GTP-binding protein HflX [Erwinia billingiae Eb661]
          Length = 426

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 83/229 (36%), Gaps = 29/229 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDV 244
             + + N I  + + +     Q + G   RN   +    ++G++NAGKS+LFN +   +V
Sbjct: 163 DRRLLRNRITLILSRLERVAKQREQGRQARNKADVPTLSLVGYTNAGKSTLFNRVTAAEV 222

Query: 245 AIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
             V D    T D     +D+     V ++DT G             K T  E   A L++
Sbjct: 223 -YVADQLFATLDPTLRRIDVADVGEVVLADTVGFIRHLPHDLVAAFKATLQETREATLLV 281

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYD---------HL 342
            + +    +     K             I  + +  K D+   +    D           
Sbjct: 282 HVIDAADLRVDENIKAVEVVLEEIESDEIPTLQVMNKIDMLDGFVPRIDRDEENKPVRVW 341

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
           +S+ TGEG+  L   +   L+ +  +    +P      R  ++  Q + 
Sbjct: 342 VSAQTGEGIPLLFQALTERLAGEIAQYDLRLPPEAGRLRSRFYQLQAIE 390


>gi|91977066|ref|YP_569725.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris
           BisB5]
 gi|91683522|gb|ABE39824.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris
           BisB5]
          Length = 434

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 106/270 (39%), Gaps = 36/270 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E   ++ +  ++ + S L   W   L   R          E +       + + +
Sbjct: 117 RAKTKEGSLQVELAHLNYQRSRLVRSWTH-LERQRGGFGFMGGPGETQI--EADRRLIGD 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  L+N++    +  +L    R       + ++G++NAGKS+LFN L + DV    D+ 
Sbjct: 174 RITRLENELKKVQATRRLHRAGRQRVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADML 232

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     L L  G    +SDT G             + T  EV  ADLIL +++I  
Sbjct: 233 FATLDPTLRALSLPHGGKAMLSDTVGFISNLPTQLVAAFRATLEEVLEADLILHVRDIAH 292

Query: 311 KKEISFPKNIDFIF--------------IGTKSDLYSTYTEE----------YDHLI--- 343
           +   +  +++D +               I  K D +     E           DH     
Sbjct: 293 EDAEAQDRDVDAVLRQLGVEADSGRILEIWNKIDRFEPEQLEELRNIAARRSPDHPCFLV 352

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           S+ +GEG+++++  I+  L+     L  +I
Sbjct: 353 SAVSGEGVDDVLLAIEQRLAMTRTVLDLTI 382


>gi|221641175|ref|YP_002527437.1| GTP-binding protein Era [Rhodobacter sphaeroides KD131]
 gi|221161956|gb|ACM02936.1| GTP-binding protein Era [Rhodobacter sphaeroides KD131]
          Length = 295

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 24/201 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G+    
Sbjct: 1   MALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGQAQIVFVDTPGLFRPR 60

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN-----------SKKEISFPKNIDFIFIGTKSD 330
             +++  +   +    +AD+I+LL E +                  P+         K D
Sbjct: 61  RRLDRAMVAAAWGGAADADVIVLLVEAHRGLTEGTQAIIDAMRDRIPQGQTVALAINKID 120

Query: 331 -------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                        L   +      +IS+  G G+E+L   +  IL       P    +  
Sbjct: 121 RVKAEVLLGLAQELNGAFPFAETFMISAEKGHGVEKLRRWLAGILPEGPWFYPEDQIADV 180

Query: 378 RHLYHLSQTVRYLEMASLNEK 398
                 ++  R      L+E+
Sbjct: 181 PMRAIAAEITREKLTLRLHEE 201


>gi|307564566|ref|ZP_07627106.1| GTP-binding protein HflX [Prevotella amnii CRIS 21A-A]
 gi|307346724|gb|EFN92021.1| GTP-binding protein HflX [Prevotella amnii CRIS 21A-A]
          Length = 418

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 14/168 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  +     Q K     R    ++ ++G++N GKS++ N L+K +V
Sbjct: 181 EMDRRIILNRMSLLKERLLEIDKQKKTQRKNRGRMIRVALVGYTNVGKSTIMNLLSKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + ++     ++DT G          +  K T  EV  ADL+L 
Sbjct: 241 -FAENKLFATLDTTVRKVVIDNLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLLH 299

Query: 305 LKEINS---KKEISFPK---------NIDFIFIGTKSDLYSTYTEEYD 340
           + +I+    +++I+            +   I +  K D Y    ++ D
Sbjct: 300 VVDISHSDFEEQINVVNKTLADLGCADKPSILVFNKIDNYKWVDKDAD 347


>gi|300813666|ref|ZP_07093988.1| GTP-binding protein HflX [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512208|gb|EFK39386.1| GTP-binding protein HflX [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 422

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 93/257 (36%), Gaps = 31/257 (12%)

Query: 150 MSGELSSLYGQWIDKLTHIRS------FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
             G+L     Q   +L  +                   E +     + +L +I  +K  +
Sbjct: 121 YEGKLQVELAQLEYQLPRLLGIKGWSRTGGGIGTRGPGEQIIETDRRRLLREIDKIKEKL 180

Query: 204 SSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDV--AIVTDIPGTTRDVL 258
           +            R   KI    ++G++NAGKS++ N + + D     V D+   T D  
Sbjct: 181 NKAKKTRDTTRSKRMNSKIPTVSLVGYTNAGKSTILNRIKEDDSKEVFVKDMLFATLDPN 240

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-EISF 316
           +    L  G    ISDT G          E  K T  E++ +DLI+ + + +SK  EI++
Sbjct: 241 SRKARLLSGREFIISDTVGFVSKLPTKLIEAFKSTLEEIKYSDLIVHVIDASSKDLEIAY 300

Query: 317 -----------PKNIDFIFIGTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKI 358
                       K+   + +  KSD     +       +     IS+     + +L+  I
Sbjct: 301 DTTMNILQEIGIKDKKILTVFNKSDKIDLNSTTIPLKIKSQKIYISAKNDPDMNKLLQAI 360

Query: 359 KSILSNKFKKLPFSIPS 375
           +  L  ++     + P 
Sbjct: 361 EENLPEQYIYTKLNFPY 377


>gi|110802214|ref|YP_698293.1| ferrous iron transport protein B [Clostridium perfringens SM101]
 gi|110682715|gb|ABG86085.1| ferrous iron transport protein B [Clostridium perfringens SM101]
          Length = 669

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 19/155 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ N GK+SLFN L K    I  + PG T +     L  +G   K+ D  G   
Sbjct: 2   LTIALAGNPNCGKTSLFNLLTKSRQHI-GNWPGVTVEKKEGTLKFKGESYKVIDLPGTYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                E E + R ++  +  D+++ + +  + +              + +      D   
Sbjct: 61  LGAYSEDEIVARNYILKDKPDVVINVVDATNLERNLYLTTQLIEMGANVVIALNMIDQAE 120

Query: 334 TYTEEYD------------HLISSFTGEGLEELIN 356
           +   E D               S+F   G+EELI 
Sbjct: 121 SLNIEIDTNKLSKRLGVPIIKTSAFKNRGIEELIE 155


>gi|71278353|ref|YP_267092.1| GTP-binding protein HflX [Colwellia psychrerythraea 34H]
 gi|71144093|gb|AAZ24566.1| GTP-binding protein HflX [Colwellia psychrerythraea 34H]
          Length = 428

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 91/264 (34%), Gaps = 27/264 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    S L   W   L   +  I        + +      +E + 
Sbjct: 114 RARTHEGKLQVELAQLRHMSSRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRERMV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +I      +     QG+          + ++G++NAGKS+LFN L + DV    D    T
Sbjct: 173 NIRKRLGKVEVQRQQGRRARTRAELPTLSLVGYTNAGKSTLFNTLTQSDV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            D     +DL G   V ++DT G             K T  E   A+L+L + +I+    
Sbjct: 232 LDPTLRKIDLFGVGRVILADTVGFIRHLPHDLVAAFKATLTETREAELLLHVVDISDDRR 291

Query: 312 -----------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                      KEI    ++  + I  K D         D           +S+    G 
Sbjct: 292 SENIEQVEYVLKEIE-ANDVPQLIICNKIDNLDDIEPRIDRDDQGMPIRVWLSAQANIGT 350

Query: 352 EELINKIKSILSNKFKKLPFSIPS 375
           E L   +   L  +      SIP 
Sbjct: 351 ELLFTALAERLDIQVVNHQLSIPP 374


>gi|39935664|ref|NP_947940.1| GTP-binding protein HSR1-related [Rhodopseudomonas palustris
           CGA009]
 gi|39649517|emb|CAE28039.1| GTP binding protein-like [Rhodopseudomonas palustris CGA009]
          Length = 424

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 99/267 (37%), Gaps = 30/267 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T E   ++ +  ++ + S L   W         F         + +       E + 
Sbjct: 107 RAKTREGTLQVELAHLNYQRSRLVRSWTHLERQRGGFGFMGGPGETQIEADRRLIGERIT 166

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +      + +     + G        + ++G++NAGKS+LFN L + DV    D+   T
Sbjct: 167 KLEAELKKVQATRRLHRAGRQRVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFAT 225

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     + L  G    +SDT G             + T  EV  ADLIL +++I+ +  
Sbjct: 226 LDPTLRAIQLPHGGKAMLSDTVGFISNLPTQLVAAFRATLEEVLEADLILHVRDISHEDA 285

Query: 314 ISFPKNID--------------FIFIGTKSDLYSTYTEE----------YDHLI---SSF 346
            +   ++D               + +  K D +     +           DH     S+ 
Sbjct: 286 EAQQHDVDNVLRQLGVDAASGRIVEVWNKIDRFEPEQRDELKNIAARRPEDHPCLLVSAV 345

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSI 373
           +GEG++EL+  I+  L+     L  SI
Sbjct: 346 SGEGVDELLLSIEQRLAATRTVLDLSI 372


>gi|319901061|ref|YP_004160789.1| GTP-binding proten HflX [Bacteroides helcogenes P 36-108]
 gi|319416092|gb|ADV43203.1| GTP-binding proten HflX [Bacteroides helcogenes P 36-108]
          Length = 418

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 17/206 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q       R    ++ ++G++N GKS+L N LAK +V
Sbjct: 181 EMDRRIILNRMSLLKERLAEIDRQKSTQRKNRGRMIRVALVGYTNVGKSTLMNLLAKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + +E     +SDT G          +  K T  EV  ADL+L 
Sbjct: 241 -FAENKLFATLDTTVRKVIIENLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLLH 299

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           + +I+    +++I                 I +  K D Y TY E+    ++  T E L 
Sbjct: 300 IVDISHPDFEEQIEVVNKTLADIGAAGKPMILVFNKIDAY-TYVEKAADDLTPRTKENLT 358

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKR 378
             + ++      K +     I + +R
Sbjct: 359 --LEELMKTWMAKMEDNCLFISARER 382


>gi|242399005|ref|YP_002994429.1| HflX-related GTP-binding protein [Thermococcus sibiricus MM 739]
 gi|242265398|gb|ACS90080.1| HflX-related GTP-binding protein [Thermococcus sibiricus MM 739]
          Length = 424

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 80/221 (36%), Gaps = 35/221 (15%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAI 246
           K +   +  +K ++    +  ++    R       I + G++NAGKS+L N LA +++  
Sbjct: 153 KHIRYRMGRIKKELEKVKADREVKRKRREEVGFILIALAGYTNAGKSTLLNTLANEEIET 212

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
              +  TT D  T    + G    I+DT G  +       E    T  E+  AD+ILL+ 
Sbjct: 213 KMQMF-TTLDTTTRRFMMNGKKTLITDTVGFIDDLPPFIVEAFHSTLEEIIKADIILLIL 271

Query: 307 EINSK---------KEISFPK-----NIDFIFIGTKSDLYSTYTEE-------------- 338
           +I+             I   K     +   I +  K DL S    E              
Sbjct: 272 DISEPWREIKRKFLASIEVLKELKTLDKPLIIVLNKKDLTSKADVEDKKKALEELITRKG 331

Query: 339 ---YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
              +  +  S     L EL N ++ ++    K   F +   
Sbjct: 332 IIAHSIIPISAKENDLGELKNSLEEVMFTLPKYRLFEVLVR 372


>gi|222480706|ref|YP_002566943.1| GTP-binding protein HSR1-related [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453608|gb|ACM57873.1| GTP-binding protein HSR1-related [Halorubrum lacusprofundi ATCC
           49239]
          Length = 328

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 94/240 (39%), Gaps = 26/240 (10%)

Query: 143 RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND 202
            R ++  +    S       D+  +      +D+D + +   Q F+   + + +  +++D
Sbjct: 82  LRQALSQVM-WASRQIEDLRDE--YTTKIRNSDVDTARKHRKQAFAR--MADVMDQIEDD 136

Query: 203 ISSHISQGKLGEIIRN----GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +          +++ +       IVI G+ N GKSS  N + +    I  + P TT+ V 
Sbjct: 137 LRYIGDSRDQLKVLPDIRPDEPAIVIAGYPNVGKSSFVNRVTRASNQI-AEYPFTTKGVQ 195

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN-ADLILLLKE---------- 307
               + +    +I DT G+ +  +    +  ++    +E+ AD+++ + +          
Sbjct: 196 IGHFERDHVRYQIVDTPGLLDRPEDERNDIERQAVSALEHLADVVVFVLDPSGDCGYPLN 255

Query: 308 ----INSKKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHLISSFTGEGLEELINKIKSIL 362
               +  +    F + + F+ +  K D +     E  D  +S    E +E++++      
Sbjct: 256 VQLELREEVRELFGEAVPFLTVANKHDRFEAVQAESVDATMSVTEDENVEDVLDMAVEAA 315


>gi|302339966|ref|YP_003805172.1| ferrous iron transporter B [Spirochaeta smaragdinae DSM 11293]
 gi|301637151|gb|ADK82578.1| ferrous iron transport protein B [Spirochaeta smaragdinae DSM
           11293]
          Length = 683

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 68/196 (34%), Gaps = 22/196 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G  N GKS++FN L       V + PG T +  +      G    I D  G   
Sbjct: 10  LTIALAGQPNTGKSTVFNRLTGA-RQHVGNWPGKTVEQKSGGFRHNGSDYNIVDLPGTYS 68

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDLY 332
                 +E I R FL  E  D+++++ + +  +       EI     +  +     +D+ 
Sbjct: 69  LTANSLEETIARDFLIKEEPDVVVVMADASQLERSLYLLGEIRLLP-VSVVLALNMTDVA 127

Query: 333 STYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               ++ D              +++  G G +EL++ I     ++    P +       L
Sbjct: 128 ERQGKQIDTSHLAAELRVPVVSMTASKGIGFDELMDAIAETALSE-PPPPDTFTDDTLCL 186

Query: 381 YHLSQTVRYLEMASLN 396
                  + L    L 
Sbjct: 187 VAYENISKLLAQKDLE 202


>gi|257219496|gb|ACV50404.1| GTP-binding protein HflX [Rhizobium leguminosarum bv. viciae]
          Length = 432

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 31/209 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + + + I+ L+ ++   +   +L    R       + ++G++NAGKS+LFN +   
Sbjct: 166 EADRRMLQDRIIKLERELEQVVRTRQLHRAKRRKVPHPIVALVGYTNAGKSTLFNRITGA 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D+   T D     + L  G  V +SDT G             + T  EV  ADL
Sbjct: 226 GV-LAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISDLPTHLVAAFRATLEEVLEADL 284

Query: 302 ILLLKEINSKKEISFPKNIDFIF----------------IGTKSDLYSTYTEEY------ 339
           IL +++++     +   ++  I                 +  K D       +       
Sbjct: 285 ILRVRDMSDADNQAQSSDVMRILNDLGIDEAEAEKRLIEVWNKIDRLEPEVHDAMVQKSA 344

Query: 340 ----DHLISSFTGEGLEELINKIKSILSN 364
                  +S+ +GEG++ L+ +I   LS 
Sbjct: 345 GASNVVAVSAVSGEGVDTLMEEISRRLSG 373


>gi|309799959|ref|ZP_07694160.1| GTP-binding proten HflX [Streptococcus infantis SK1302]
 gi|308116406|gb|EFO53881.1| GTP-binding proten HflX [Streptococcus infantis SK1302]
          Length = 412

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 100/266 (37%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNTLTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + ++      
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEE-----LINKI 358
            K            +I  + +  K+DL   +T  +  + + S   +   E     L++KI
Sbjct: 296 EKTVLSIMKDLDMEDIPRLTLYNKADLVEDFTPTQTPYALISAKSKDSREQLQALLLDKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 356 KEIFEPFTLRVPFSKSYKIHDLESVA 381


>gi|261254056|ref|ZP_05946629.1| GTP-binding protein HflX [Vibrio orientalis CIP 102891]
 gi|260937447|gb|EEX93436.1| GTP-binding protein HflX [Vibrio orientalis CIP 102891]
          Length = 429

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 106/296 (35%), Gaps = 29/296 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     ++    QG+          + ++G++NAGKS+LFN + +  V    D    T
Sbjct: 173 TILRRLEKVAKQREQGRRARSRAEIPTVSLVGYTNAGKSTLFNRITEAGV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     ++L       ++DT G             K T  E + AD++L + + + ++ 
Sbjct: 232 LDPTLRKIELSDVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASDERF 291

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                       EI     I  + +  K D         D           +S+  G+G+
Sbjct: 292 RENIQAVHEVLAEID-ADEIPALVVMNKIDNLEGQNPRIDRDDEGVPQTVWVSAMEGKGI 350

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           E L + +   L+++  +    IP   +H   L  T   ++     E D   +++ E
Sbjct: 351 ELLFDALTERLASQMVQHQMRIPP--QHQGRLRSTFFQMKCIQREEYDQEGNLLIE 404


>gi|53711962|ref|YP_097954.1| GTP-binding protein [Bacteroides fragilis YCH46]
 gi|52214827|dbj|BAD47420.1| GTP-binding protein [Bacteroides fragilis YCH46]
          Length = 417

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 15/195 (7%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q       R    ++ ++G++N GKS++ N LAK +V
Sbjct: 180 EMDRRIILNRMSLLKERLAEIDKQKSTQRKNRGRMIRVALVGYTNVGKSTMMNLLAKSEV 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + ++     +SDT G          +  K T  EV  ADL++ 
Sbjct: 240 -FAENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLVH 298

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFT-GEGL 351
           + +I+    +++I                 I I  K D Y+   +  D L         L
Sbjct: 299 VVDISHPGFEEQIEVVNKTLADIGGGGKPMILIFNKIDAYTYVEKAPDDLTPKIKENLTL 358

Query: 352 EELINKIKSILSNKF 366
           EEL+    + + +  
Sbjct: 359 EELMKTWMAKMEDNC 373


>gi|15800731|ref|NP_286745.1| putative histone [Escherichia coli O157:H7 EDL933]
 gi|15801136|ref|NP_287153.1| hypothetical protein Z1650 [Escherichia coli O157:H7 EDL933]
 gi|15830649|ref|NP_309422.1| hypothetical protein ECs1395 [Escherichia coli O157:H7 str. Sakai]
 gi|168747217|ref|ZP_02772239.1| putative GTPase [Escherichia coli O157:H7 str. EC4113]
 gi|168754492|ref|ZP_02779499.1| putative GTPase [Escherichia coli O157:H7 str. EC4401]
 gi|168760647|ref|ZP_02785654.1| putative GTPase [Escherichia coli O157:H7 str. EC4501]
 gi|168767670|ref|ZP_02792677.1| putative GTPase [Escherichia coli O157:H7 str. EC4486]
 gi|168773856|ref|ZP_02798863.1| putative GTPase [Escherichia coli O157:H7 str. EC4196]
 gi|168781186|ref|ZP_02806193.1| putative GTPase [Escherichia coli O157:H7 str. EC4076]
 gi|168788892|ref|ZP_02813899.1| putative GTPase [Escherichia coli O157:H7 str. EC869]
 gi|168799290|ref|ZP_02824297.1| putative GTPase [Escherichia coli O157:H7 str. EC508]
 gi|195935404|ref|ZP_03080786.1| hypothetical protein EscherichcoliO157_02937 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806517|ref|ZP_03248854.1| putative GTPase [Escherichia coli O157:H7 str. EC4206]
 gi|208815077|ref|ZP_03256256.1| putative GTPase [Escherichia coli O157:H7 str. EC4045]
 gi|208822030|ref|ZP_03262349.1| putative GTPase [Escherichia coli O157:H7 str. EC4042]
 gi|209400007|ref|YP_002269863.1| putative GTPase [Escherichia coli O157:H7 str. EC4115]
 gi|217328450|ref|ZP_03444532.1| putative GTPase [Escherichia coli O157:H7 str. TW14588]
 gi|254792401|ref|YP_003077238.1| hypothetical protein ECSP_1318 [Escherichia coli O157:H7 str.
           TW14359]
 gi|261227381|ref|ZP_05941662.1| hypothetical protein EscherichiacoliO157_22716 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|12514024|gb|AAG55355.1|AE005276_8 putative histone [Escherichia coli O157:H7 str. EDL933]
 gi|12514542|gb|AAG55765.1|AE005312_11 unknown [Escherichia coli O157:H7 str. EDL933]
 gi|13360855|dbj|BAB34818.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187770513|gb|EDU34357.1| putative GTPase [Escherichia coli O157:H7 str. EC4196]
 gi|188018187|gb|EDU56309.1| putative GTPase [Escherichia coli O157:H7 str. EC4113]
 gi|189001363|gb|EDU70349.1| putative GTPase [Escherichia coli O157:H7 str. EC4076]
 gi|189358140|gb|EDU76559.1| putative GTPase [Escherichia coli O157:H7 str. EC4401]
 gi|189363125|gb|EDU81544.1| putative GTPase [Escherichia coli O157:H7 str. EC4486]
 gi|189368729|gb|EDU87145.1| putative GTPase [Escherichia coli O157:H7 str. EC4501]
 gi|189371494|gb|EDU89910.1| putative GTPase [Escherichia coli O157:H7 str. EC869]
 gi|189378348|gb|EDU96764.1| putative GTPase [Escherichia coli O157:H7 str. EC508]
 gi|208726318|gb|EDZ75919.1| putative GTPase [Escherichia coli O157:H7 str. EC4206]
 gi|208731725|gb|EDZ80413.1| putative GTPase [Escherichia coli O157:H7 str. EC4045]
 gi|208737515|gb|EDZ85198.1| putative GTPase [Escherichia coli O157:H7 str. EC4042]
 gi|209161407|gb|ACI38840.1| putative GTPase [Escherichia coli O157:H7 str. EC4115]
 gi|217318877|gb|EEC27303.1| putative GTPase [Escherichia coli O157:H7 str. TW14588]
 gi|254591801|gb|ACT71162.1| hypothetical protein ECSP_1318 [Escherichia coli O157:H7 str.
           TW14359]
 gi|320189693|gb|EFW64349.1| NgrB [Escherichia coli O157:H7 str. EC1212]
 gi|326343339|gb|EGD67105.1| NgrB [Escherichia coli O157:H7 str. 1125]
 gi|326344805|gb|EGD68553.1| NgrB [Escherichia coli O157:H7 str. 1044]
          Length = 290

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 103/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQEQNIREK-TDAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L      ++  E++   +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELCTESVWGQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|258423854|ref|ZP_05686739.1| GTP-binding protein HflX [Staphylococcus aureus A9635]
 gi|257845883|gb|EEV69912.1| GTP-binding protein HflX [Staphylococcus aureus A9635]
 gi|283470521|emb|CAQ49732.1| GTP-binding proten HflX [Staphylococcus aureus subsp. aureus ST398]
 gi|329733580|gb|EGG69908.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           21193]
          Length = 412

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 101/265 (38%), Gaps = 25/265 (9%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 180 NEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 298

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEEL-- 354
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L  
Sbjct: 299 YRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVK 358

Query: 355 ---INKIKSILSNKFKKLPFSIPSH 376
              I++IK  L+   + +  +    
Sbjct: 359 TLFIDEIKRQLTYYDEAIATNNADR 383


>gi|156972473|ref|YP_001443380.1| putative GTPase HflX [Vibrio harveyi ATCC BAA-1116]
 gi|47933919|gb|AAT39525.1| HflX [Vibrio harveyi]
 gi|156524067|gb|ABU69153.1| hypothetical protein VIBHAR_00093 [Vibrio harveyi ATCC BAA-1116]
          Length = 429

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 94/269 (34%), Gaps = 31/269 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + + +
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRD 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   +     Q + G   RN      + ++G++NAGKS+LFN + +  V    D  
Sbjct: 170 RIKAILRRLEKVAKQREQGRRARNRAEIPTVSLVGYTNAGKSTLFNRITEAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     ++L       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKIELADVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASD 288

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGE 349
           ++            E      +  + +  K D         +           +S+  G 
Sbjct: 289 ERFRENIQAVHEVLEEIDAHEVPTLVVMNKIDNLEEQKPRIERDEEGVPRTVWVSAMDGL 348

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKR 378
           G++ L + +   L+++  +    IP   +
Sbjct: 349 GIDLLFDALTERLASQMVEHQLRIPPQYQ 377


>gi|16131995|ref|NP_418594.1| GTPase, stimulated by 50S subunit binding [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89110893|ref|AP_004673.1| predicted GTPase [Escherichia coli str. K-12 substr. W3110]
 gi|170083619|ref|YP_001732939.1| GTPase [Escherichia coli str. K-12 substr. DH10B]
 gi|238903280|ref|YP_002929076.1| putative GTPase [Escherichia coli BW2952]
 gi|462264|sp|P25519|HFLX_ECOLI RecName: Full=GTP-binding protein hflX
 gi|436156|gb|AAC43398.1| putative GTPase required for high frequency lysogenization by
           bacteriophage lambda [Escherichia coli]
 gi|537014|gb|AAA97069.1| putative GTPase required for high frequency lysogenization by
           bacteriophage lambda; TTG start codon [Escherichia coli
           str. K-12 substr. MG1655]
 gi|1790615|gb|AAC77130.1| GTPase, stimulated by 50S subunit binding [Escherichia coli str.
           K-12 substr. MG1655]
 gi|85676924|dbj|BAE78174.1| predicted GTPase [Escherichia coli str. K12 substr. W3110]
 gi|169891454|gb|ACB05161.1| predicted GTPase [Escherichia coli str. K-12 substr. DH10B]
 gi|238862450|gb|ACR64448.1| predicted GTPase [Escherichia coli BW2952]
 gi|260451000|gb|ACX41422.1| GTP-binding proten HflX [Escherichia coli DH1]
 gi|315138727|dbj|BAJ45886.1| putative GTPase HflX [Escherichia coli DH1]
          Length = 426

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPNRVWLSAQTGAGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|319941505|ref|ZP_08015832.1| small GTP-binding protein domain [Sutterella wadsworthensis
           3_1_45B]
 gi|319804979|gb|EFW01818.1| small GTP-binding protein domain [Sutterella wadsworthensis
           3_1_45B]
          Length = 360

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 83/228 (36%), Gaps = 25/228 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + +   +  L++ +     Q       R   +   + + G++NAGKS+LFN + + 
Sbjct: 118 ELDRRMIGTRMKQLRDQLKRLARQRGTQRRARSRGDSITVSLAGYTNAGKSTLFNKITRA 177

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +      +  T           +   V  +DT G          E  K T  E  +ADLI
Sbjct: 178 ETYAADQLFATLDTTARKFWLSDEETVVATDTVGFIRGLPHQLIEAFKSTLDETVHADLI 237

Query: 303 LLLKEINS---KKEIS---------FPKNIDFIFIGTKSDLYSTYTE--------EYDHL 342
           L + + +S   +++I+            ++  I +  K D+     E             
Sbjct: 238 LHVVDASSPVREEQIAEVNSVLADIHADDVPVILVYNKIDVTGQAPEIVRDQNGRPKAVF 297

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
           +S+ TG GL+EL   +    +   ++ P      +   + L +T   L
Sbjct: 298 VSALTGAGLDELRQAVSEFSAAWREEHPNE--PRELEDWELERTDEAL 343


>gi|300726794|ref|ZP_07060224.1| GTP-binding proten HflX [Prevotella bryantii B14]
 gi|299775907|gb|EFI72487.1| GTP-binding proten HflX [Prevotella bryantii B14]
          Length = 415

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 76/195 (38%), Gaps = 15/195 (7%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDV 244
               + +L  I  LK  +     Q       R    ++ ++G++N GKS+  N L+K +V
Sbjct: 181 EMDRRIILQRITLLKKRLEEIDRQQSTQRKNRGRLIRVALVGYTNVGKSTTMNLLSKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + ++     ++DT G          +  K T  E   ADL++ 
Sbjct: 241 -FAENKLFATLDTTVRKVVVKNLPFLLADTVGFIRKLPTDLVDSFKSTLDETREADLLVH 299

Query: 305 LKEINS---KKEISFPK---------NIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGL 351
           + +I+    +++I+  +         +   + +  K D Y+    EE D   S+     L
Sbjct: 300 VVDISHPDFEEQINVVEQTLKDIGCTDKPSMIVFNKIDNYTWVEKEEDDLTPSTKENISL 359

Query: 352 EELINKIKSILSNKF 366
           +EL     + + +  
Sbjct: 360 DELKKTWMARMHDNC 374


>gi|251796625|ref|YP_003011356.1| GTP-binding proten HflX [Paenibacillus sp. JDR-2]
 gi|247544251|gb|ACT01270.1| GTP-binding proten HflX [Paenibacillus sp. JDR-2]
          Length = 429

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 97/268 (36%), Gaps = 22/268 (8%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T              L          L+ +   I        + +      +  + D
Sbjct: 124 RAKTREGIIQVELAQLSYLLPRLSGHGKNLSRLGGGIGTRGPGESKLETDRRHIRGRITD 183

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +    +++  H    +         ++ ++G++NAGKS+L   L   DV  V +    T 
Sbjct: 184 LKAQLDEVVRHRKLHRERRKKSGVIQVALVGYTNAGKSTLLRELTSADV-YVENQLFATL 242

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D  +  L+L  G  V ++DT G  +          + T  EV  ADL+L + + +S    
Sbjct: 243 DPTSRTLELPNGREVVLTDTVGFIQNLPHDLVAAFRATLEEVLEADLVLHVVDGSSPMRE 302

Query: 315 SFPK------------NIDFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLEELIN 356
              +                + I  K DL      E         +IS++  + LE + N
Sbjct: 303 EQMRVVEQILGDLGAAGTASLTIYNKKDLCEVNHVELPTSGTDTLVISAYQKDDLELVRN 362

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLS 384
           KI+  L+     + F++P+ +  L  L+
Sbjct: 363 KIQDKLTGD--TVTFTLPADRGDLIALA 388


>gi|134302062|ref|YP_001122031.1| protease, GTP-binding subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049839|gb|ABO46910.1| GTP-binding protein [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 435

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 90/266 (33%), Gaps = 25/266 (9%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E + ++ +  ++ + + L   WI                  + ++     ++ +
Sbjct: 116 LRAKTYEGKLQVELAQLNYQSTRLVKGWIHLERQKGGIGVRGGPGETQLEIDRRLIRQRI 175

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I      +  H    +      N   I  +G++NAGKS+LFN +   DV     +  T
Sbjct: 176 KQIAQKLEKVKHHRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFAT 235

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
               L   +  +   V  SDT G  +       E    T  E   +DL++ + +   +  
Sbjct: 236 LDPTLRKVIVPKLGEVIFSDTVGFIKNLPHNLVEAFHATLEEAIESDLLVHVIDYADEDH 295

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD------------HLISSFTGE 349
            S+ +            + + I +  K D        +               +S+  G+
Sbjct: 296 KSYIEQVEKVLSEIGIADKETICVYNKIDKLENIKPSFVPLEDSDSSVVSRVYLSAQNGD 355

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
           GL E    + +  +  +      +P 
Sbjct: 356 GLVEFYQALATFFNKTWINQTLYLPP 381


>gi|15614925|ref|NP_243228.1| hypothetical protein BH2362 [Bacillus halodurans C-125]
 gi|10174982|dbj|BAB06081.1| BH2362 [Bacillus halodurans C-125]
          Length = 418

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 92/249 (36%), Gaps = 18/249 (7%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            +++   +          L          L+ +   I        + +      ++ + D
Sbjct: 118 RAKSREGKLQVELAQLNYLLPRIVGQGQGLSRLGGGIGTRGPGETKLETDRRHIRKRMAD 177

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           I         H  + +        ++I ++G++NAGKS+L N L   D +   D+   T 
Sbjct: 178 IDKQLKHTVKHRDRYRARRERNQTFRIALVGYTNAGKSTLLNRLTASD-SYEEDLLFATL 236

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
           D +T  + L  G  V +SDT G             + T  EV++ADL+L + + +S++  
Sbjct: 237 DPMTRKMRLPSGMEVILSDTVGFINQLPTTLVAAFRSTLEEVKHADLLLHVVDRSSEQLQ 296

Query: 315 SFPK------------NIDFIFIGTKSDLYS----TYTEEYDHLISSFTGEGLEELINKI 358
           +  +                + +  K+D  +       ++    +S+   E ++ L   I
Sbjct: 297 AHMETVSELLHQLEVDQSQMLVVYNKADKPNLPIIPVHQQNGIEMSAHKREDIQRLRQMI 356

Query: 359 KSILSNKFK 367
           +  L + F 
Sbjct: 357 ERTLVDLFT 365


>gi|328676010|gb|AEB28685.1| GTP-binding protein HflX [Francisella cf. novicida 3523]
          Length = 435

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 25/266 (9%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E + ++ +  ++ + + L   W                   + ++     ++ +
Sbjct: 116 LRAKTYEGKLQVELAQLNYQSTRLVRGWTHLERQKGGIGVRGGPGETQLEIDRRLIRQRI 175

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I      +  H    +      N   I  +G++NAGKS+LFN +   DV     +  T
Sbjct: 176 KQITQKLEKVKHHRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFAT 235

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
               L   +  +   V  SDT G  +       E    T  E   +DL++ + +   +  
Sbjct: 236 LDPTLRKVIVPKLGEVIFSDTVGFIKNLPHNLVEAFHATLEEAIESDLLVHVIDYADEDH 295

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD------------HLISSFTGE 349
            S+ +            + + I +  K D        +               +S+  G+
Sbjct: 296 KSYIEQVEKVLSEIGIADKETICVYNKIDKLENINPSFVPLEDSDNSVVARVYLSAQNGD 355

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
           GL E    + +  +  +      +P 
Sbjct: 356 GLAEFYQALATFFNKTWINQTLDLPP 381


>gi|327402909|ref|YP_004343747.1| GTP-binding protein HflX [Fluviicola taffensis DSM 16823]
 gi|327318417|gb|AEA42909.1| GTP-binding protein HflX [Fluviicola taffensis DSM 16823]
          Length = 400

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 15/163 (9%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKK 242
           Q  + + ++   + L  +    I +    +    G   ++ ++G++N GKS++ N L+K 
Sbjct: 166 QIETDRRIIQTRIALLKEKLKEIDKQMSVQRGNRGQLVRVALVGYTNVGKSTMMNMLSKS 225

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V    +    T D     + +E     ++DT G          E  K T  EV  ADL+
Sbjct: 226 EV-FAENKLFATLDTTVRKVVIENLPFLLTDTVGFIRKLPHQLVESFKSTLDEVREADLL 284

Query: 303 LLLKEI------------NSKKEISFPKNIDFIFIGTKSDLYS 333
           + + +I            N        K+   I +  K D Y 
Sbjct: 285 IHVVDISHPNFEDQLNIVNETLAELDNKDKPMILVFNKIDAYK 327


>gi|157147858|ref|YP_001455177.1| putative GTPase HflX [Citrobacter koseri ATCC BAA-895]
 gi|157085063|gb|ABV14741.1| hypothetical protein CKO_03662 [Citrobacter koseri ATCC BAA-895]
          Length = 426

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLEKVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNQIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +++  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIDAVDTVLEEIDAHEIPTLMVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGIGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|15602772|ref|NP_245844.1| hypothetical protein PM0907 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721223|gb|AAK02991.1| HflX [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 448

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 95/250 (38%), Gaps = 26/250 (10%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           K  ++ +      +     Q +      +   I ++G++NAGKS+LFN + + +V    D
Sbjct: 190 KVRISQLQSRLAKVEKQRHQNRQTRQKADIPTISLVGYTNAGKSTLFNLITQANV-YAAD 248

Query: 250 IPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D     L ++      ++DT G             K T  E   A L+L + + 
Sbjct: 249 QLFATLDPTLRRLQIQDVGTTILADTVGFIRHLPHDLVSAFKSTLQETTEAALLLHVIDC 308

Query: 309 NSKKEIS------------FPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFT 347
              +++                +I  + +  K D  +      ++          +S+ T
Sbjct: 309 ADPRKLENIHAVEAVLKEINAGDIPTLLVYNKIDQVAHIEPHIEYDQEQRPIAVYMSAQT 368

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G GL  L++ I   L N+   L  ++P H   + H       ++   +NE+     ++A 
Sbjct: 369 GIGLHLLLDAISLCLKNEILDLALTLPVHTGKIRHALYQQDCIQHEQINEQGEF--LLAI 426

Query: 408 NL-RLASVSL 416
            + ++A + L
Sbjct: 427 RIDKVAWLKL 436


>gi|300825513|ref|ZP_07105577.1| small GTP-binding protein [Escherichia coli MS 119-7]
 gi|300522036|gb|EFK43105.1| small GTP-binding protein [Escherichia coli MS 119-7]
          Length = 290

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 101/248 (40%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G  + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGCSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +      +  K    +   F+ +  
Sbjct: 137 RHILQRGHQQVLFVVTQAD-KTEPCHEWDVAGIQPSPAQARNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A        L      ++  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPGHAASPLMTRLQEELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|255994492|ref|ZP_05427627.1| GTP-binding protein Era [Eubacterium saphenum ATCC 49989]
 gi|255993205|gb|EEU03294.1| GTP-binding protein Era [Eubacterium saphenum ATCC 49989]
          Length = 301

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 84/198 (42%), Gaps = 25/198 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL--DLEGYLVKI 271
           E +++G+ I I+G  N GKS+L N +    VAI T  P TTR+ +      ++    +  
Sbjct: 6   EYMKSGF-ISIIGRPNTGKSTLLNMIIGTKVAIATPKPQTTRNTIRGIFTDNIRDKQMVF 64

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEV----------------ENADLILL-LKEINSKKEI 314
            DT GI    + + ++ +  +   +                E  D I   L  I+S K I
Sbjct: 65  LDTPGIHMPKNKLGEKLVASSRRSMRDVDLVLLLVDERSKLEEEDKIFKNLASISSPK-I 123

Query: 315 SFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
                +D +       LY  Y      E    I++  G+ ++ L++K+    +++    P
Sbjct: 124 IVINKLDVMKPDQFKGLYDYYKTKEGFEAVIGITAKDGKNVDALLDKVALYCNDENIHFP 183

Query: 371 FSIPSHKRHLYHLSQTVR 388
            ++ + ++  +  S+ +R
Sbjct: 184 ENMYTDQQERFLASEIIR 201


>gi|239993400|ref|ZP_04713924.1| GTP-binding protein HflX [Alteromonas macleodii ATCC 27126]
          Length = 429

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 89/270 (32%), Gaps = 27/270 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+          + ++G++NAGKS+LFN +    V    D    T
Sbjct: 173 AILRRLEKVQKQREQGRRSRKRAEIPTVSLVGYTNAGKSTLFNTITDSHV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----- 308
            D     +DL+      ++DT G             K T  E + ADL+L + +I     
Sbjct: 232 LDPTLRKIDLKDVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADLLLHVVDIADAKY 291

Query: 309 --------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                   +  +EI   +      I  K D         +           +S+ TGEG 
Sbjct: 292 RETMDEVNDVLEEIEAGEIQQL-LICNKIDKLDDVQPRIERNDEGVPVRVWLSAQTGEGT 350

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           E L   +   L          IP  +  L 
Sbjct: 351 ELLSQALTECLGKSMVNYTLKIPPAQSRLR 380


>gi|183601212|ref|ZP_02962705.1| hypothetical protein PROSTU_04846 [Providencia stuartii ATCC 25827]
 gi|188019561|gb|EDU57601.1| hypothetical protein PROSTU_04846 [Providencia stuartii ATCC 25827]
          Length = 290

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           +L ++I     I ++G + AGKSSL NAL +  ++ V+D+ G TR      + +  + + 
Sbjct: 25  QLSQLINYSPTIGLMGKTGAGKSSLINALFQSSLSPVSDVSGCTRQAQRFSMTMNNHTLT 84

Query: 271 ISDTAGIRET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------ 317
             D   + E+ +   E   + R    +   DLI+ + + + +   S              
Sbjct: 85  FVDLPSVGESIERDKEYHRLYRNL--LPELDLIIWVLKADDRAWFSDEQCYRFLTEQCGC 142

Query: 318 KNIDFIFIGTKSDLYSTYT--EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           ++  F+FI  ++D        +E++H  SS     LE     + +        +  S   
Sbjct: 143 QSERFLFILNQADKIEPCRQWDEHNHQPSSEQTANLELKQQAVVTAFKPNHPVMVVSAIE 202

Query: 376 HKRHLYHLSQTVRYL 390
           + +      Q ++ L
Sbjct: 203 NYQLTELAEQLIQAL 217


>gi|254373007|ref|ZP_04988496.1| hypothetical protein FTCG_00580 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570734|gb|EDN36388.1| hypothetical protein FTCG_00580 [Francisella novicida GA99-3549]
          Length = 435

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 25/266 (9%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E + ++ +  ++ + + L   W                   + ++     ++ +
Sbjct: 116 LRAKTYEGKLQVELAQLNYQSTRLIKGWTHLERQKGGIGVRGGPGETQLEIDRRLIRQRI 175

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I      +  H    +      N   I  +G++NAGKS+LFN +   DV     +  T
Sbjct: 176 KQITQKLEKVKHHRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFAT 235

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
               L   +  +   V  SDT G  +       E    T  E   +DL++ + +   +  
Sbjct: 236 LDPTLRKVIVPKLGEVIFSDTVGFIKNLPHNLVEAFHATLEEAIESDLLVHVIDYADEDH 295

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD------------HLISSFTGE 349
            S+ +            + + I +  K D        +               +S+  G+
Sbjct: 296 KSYIEQVEKVLSEIGIADKETICVYNKIDKLENIKPSFVPLEDSDSSVVARVYLSAQNGD 355

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
           GL E    + +  +  +      +P 
Sbjct: 356 GLVEFYQALATFFNKTWINQTLDLPP 381


>gi|156101846|ref|XP_001616616.1| small GTP-binding protein domain containing protein [Plasmodium
           vivax SaI-1]
 gi|148805490|gb|EDL46889.1| small GTP-binding protein domain containing protein [Plasmodium
           vivax]
          Length = 499

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
            K+ ++G  NAGKSSL N++  K ++ V+    TTR  +      +   +   D+ GI  
Sbjct: 105 LKVALIGAPNAGKSSLLNSILNKTISAVSPKINTTRQDIKGIYTKDNVQLIFIDSPGIVP 164

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
                   KE +   +   E ADL+L + +   K+      NI  +    K + YS+ +E
Sbjct: 165 SHKKKKFCKELVSYAWKGYEEADLVLFIAD-TVKRPTHDVLNIIRMLAPKKVEAYSSGSE 223

Query: 338 E 338
           +
Sbjct: 224 D 224


>gi|315425495|dbj|BAJ47157.1| GTP-binding protein HflX [Candidatus Caldiarchaeum subterraneum]
 gi|315427506|dbj|BAJ49109.1| GTP-binding protein HflX [Candidatus Caldiarchaeum subterraneum]
          Length = 412

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 100/269 (37%), Gaps = 49/269 (18%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGK--LGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
           +    EV   I  +K  +     +        +  G   + + G++NAGK++LFN  + +
Sbjct: 149 DVYYNEVFRRISTIKQKLKQIRMRKNLVRQRRLEGGLPTVALTGYTNAGKTTLFNRFSGE 208

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +         TT       +   G    +SDT G  +    +  E    T  E   ADL+
Sbjct: 209 EH-PAGPQLFTTLSTTARIVKFRGRKAYLSDTVGFIKNLPHLLVESFHSTLSEFIYADLL 267

Query: 303 LLLKEINSKKEISFP--------------KNIDFIFIGTKSDLYSTYTEEYD-------- 340
           LL+ +I+ +K +                 KN+  + +  K D  + Y E+ +        
Sbjct: 268 LLVVDISEEKSVVESKLNTCLNVLDEVGVKNVPILVVFNKIDSTADYREKIESIKPEYRY 327

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY-------HLSQTVRYLEMA 393
             +S++TG+GL+ L   +  ++              +  L         L++  ++  + 
Sbjct: 328 VAVSAWTGQGLDTLEEAVADMM--------GGYIRVRAQLENGETTPSLLNEIKQFCNVL 379

Query: 394 SLNEKDCGLDI-------IAENL-RLASV 414
            +     G +I       +AE + RLA+ 
Sbjct: 380 KIEYNSSGYEIECETPLQLAEKIKRLAAE 408


>gi|298530649|ref|ZP_07018051.1| GTP-binding proten HflX [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510023|gb|EFI33927.1| GTP-binding proten HflX [Desulfonatronospira thiodismutans ASO3-1]
          Length = 552

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 85/236 (36%), Gaps = 22/236 (9%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           M  +   L  L  Q    L+ +   I        + ++     ++ +  I      +  H
Sbjct: 319 MAQLKYTLPRLIQQDR-ALSRLAGGIGGRGPGETKLELDRRKIRDRITRIKDELQKLRRH 377

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
               +   +  +   I ++G++NAGKS+L N L +  + +  D    T D  +  L    
Sbjct: 378 RENIRARRVETDVPVISLVGYTNAGKSTLLNTLTRSRI-LAEDKLFATLDPTSRRLRFPD 436

Query: 267 -YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------E 313
              V ++DT G  +      +E    T  E+  A +++ + + +  +             
Sbjct: 437 EREVVLTDTVGFIKDLPEDLREAFMATLEELSLARVLVHVADASHPEVEEQVEAVQGLLR 496

Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSIL 362
           +   ++   + +  K DL +   +E            S+   E L  L+  ++ +L
Sbjct: 497 LLELEDKPLVMVLNKWDLVTQDRKEILQNVFRDAIPASAQEEETLTPLVQTLERLL 552


>gi|269961403|ref|ZP_06175767.1| GTP-binding protein HflX [Vibrio harveyi 1DA3]
 gi|269833780|gb|EEZ87875.1| GTP-binding protein HflX [Vibrio harveyi 1DA3]
          Length = 429

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 94/269 (34%), Gaps = 31/269 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + + +
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRD 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   +     Q + G   RN      I ++G++NAGKS+LFN + +  V    D  
Sbjct: 170 RIKAILRRLEKVAKQREQGRRARNRAEIPTISLVGYTNAGKSTLFNRITEAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     ++L       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKIELADVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASD 288

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGE 349
           ++            E      +  + +  K D         +           +S+  G 
Sbjct: 289 ERFRENIQAVHEVLEEIDAHEVPTLVVMNKIDNLEEQKPRIERDEEGVPRTVWVSAMDGL 348

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKR 378
           G++ L + +   L+++  +    IP   +
Sbjct: 349 GIDLLFDALTERLASQMVEHQLRIPPQYQ 377


>gi|258625634|ref|ZP_05720515.1| GTP-binding protein HflX [Vibrio mimicus VM603]
 gi|258582089|gb|EEW06957.1| GTP-binding protein HflX [Vibrio mimicus VM603]
          Length = 429

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 92/270 (34%), Gaps = 33/270 (12%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + +  
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRE 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   +     Q + G   RN      I ++G++NAGKS+LFN + +  V    D  
Sbjct: 170 RIKAILRRLEKVAKQREQGRRARNRAEIPTISLVGYTNAGKSTLFNRITEAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     +DL       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKIDLVDVGPAVLADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASD 288

Query: 311 K-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTG 348
                         +EI     +  + +  K D         +           IS+  G
Sbjct: 289 DRFRENIQAVETVLQEID-AHEVPTLLVMNKIDSLEEQAPRIERDDEGIPRVVWISAMQG 347

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKR 378
            G+E L   +   L+++  +    IP   +
Sbjct: 348 SGIELLFQTLSERLASQVVEHHLRIPPRHQ 377


>gi|213962424|ref|ZP_03390687.1| GTP-binding protein HflX [Capnocytophaga sputigena Capno]
 gi|213955090|gb|EEB66409.1| GTP-binding protein HflX [Capnocytophaga sputigena Capno]
          Length = 401

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 84/219 (38%), Gaps = 16/219 (7%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L     S I +    +    G   ++ ++G++N GKS+L N ++
Sbjct: 161 ETEIETDRRIVRDRIALLKKKLSAIDKQMATQRSNRGALVRVALIGYTNVGKSTLMNVIS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K +V    +    T D     + +E     +SDT G          E  K T  EV  AD
Sbjct: 221 KSEV-FAENKLFATLDTTVRKVVIENLPFLLSDTVGFIRKLPTQLIESFKSTLDEVREAD 279

Query: 301 LILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           L+L + +I+        +            +   I +  K D Y+      D L +  T 
Sbjct: 280 LLLHVVDISHPNFEEHIQSVNQILAEIHSADKPTIMVFNKIDAYTNEEIAEDDLATQRTK 339

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
           +    L    ++ +    + + F    +K +L    + V
Sbjct: 340 KHF-TLEEWKQTWMQRMGRDVLFISALNKNNLEEFREVV 377


>gi|218782450|ref|YP_002433768.1| ferrous iron transport protein B [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763834|gb|ACL06300.1| ferrous iron transport protein B [Desulfatibacillum alkenivorans
           AK-01]
          Length = 737

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 62/172 (36%), Gaps = 19/172 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G+ N+GK++LFNAL       V + PG T +       +  +   I D  G     
Sbjct: 5   IALAGNPNSGKTTLFNALTGA-RQHVGNYPGVTVERKEGLCSVGAHTAHIVDLPGTYSLT 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTY 335
              E+E + R +L  E  D+++   + ++ +             +  +      D+  + 
Sbjct: 64  AYSEEEKVAREYLAQERPDVVIDTLDASNLERHLYLVVQLLEMGLPLVLALNMVDVAKSR 123

Query: 336 TEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
             E D                + TG+G ++LI     +      + P  I  
Sbjct: 124 GMEVDAEKLSELLRTPVVPTIARTGKGKQDLIQIAADLAQQPVNQTPLVISY 175


>gi|163790976|ref|ZP_02185398.1| GTP-binding protein [Carnobacterium sp. AT7]
 gi|159873715|gb|EDP67797.1| GTP-binding protein [Carnobacterium sp. AT7]
          Length = 420

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 92/243 (37%), Gaps = 20/243 (8%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           E ++Q  L+       L          L+ +   I        + +      ++ + DI 
Sbjct: 125 EGKLQVELAQLQY---LLPRLAGQGINLSRLGGGIGTRGPGETKLETDRRHIRDQITDIK 181

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
               +   H S+ +        ++I ++G++NAGKS+L N L + D     +    T D 
Sbjct: 182 RDLAETEKHRSRTREQRKESGTFQIGLMGYTNAGKSTLLNKLTQAD-TYEENQLFATLDP 240

Query: 258 LTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           LT  L L  G  V ++DT G  +       E  K T  E +  DL+L + + +++     
Sbjct: 241 LTRQLMLPSGMNVTLTDTVGFIQDLPTQLIESFKSTLEETKGVDLLLHVVDASAENMAGH 300

Query: 317 P------------KNIDFIFIGTKSDLY--STYTEEYDHLISSFTG-EGLEELINKIKSI 361
                        + I  I +  K DL   S Y   + ++  S    E +E+L+  I   
Sbjct: 301 EQTVVQLLKELGMEKIPMITVYNKKDLVEDSFYPSLFPNVFISANDPEDIEQLLTAIMQK 360

Query: 362 LSN 364
           +  
Sbjct: 361 MQE 363


>gi|325289397|ref|YP_004265578.1| small GTP-binding protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324964798|gb|ADY55577.1| small GTP-binding protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 685

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 19/160 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I +LG  N GKS+LFNAL       V + PG T +     L  +G   K+ D  G   
Sbjct: 12  LSIGLLGQPNTGKSTLFNALTGS-RQHVGNWPGKTVEKKEGTLLQDGQKYKLVDLPGTYS 70

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYS 333
                ++E I R ++  ++ D+++ + + +  +   F        +     +    D+  
Sbjct: 71  LSANSDEEVITREYIASDDLDIVVAMIDASQLERSLFLLADYAGIDRPVAVLLNMMDVAR 130

Query: 334 TYTEEYD------------HLISSFTGEGLEELINKIKSI 361
              +  D              + +   +GLE L   +K+ 
Sbjct: 131 EQGKSIDSAKLSALLGVPVFPVVASKKQGLEPLYALLKNA 170


>gi|183982002|ref|YP_001850293.1| GTP-binding protein HflX [Mycobacterium marinum M]
 gi|183175328|gb|ACC40438.1| GTP-binding protein HflX [Mycobacterium marinum M]
          Length = 504

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 80/229 (34%), Gaps = 15/229 (6%)

Query: 140 EMQRRLSMEGMSGELSSLYGQW-----IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           E + ++++  M   +      W                         E       + +  
Sbjct: 169 EGKAQVALAQME-YMLPRLRGWGESMSRQAGGRAGGSGGGVGLRGPGETKIETDRRRIRE 227

Query: 195 DILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIV 247
            +  L+ +I +       +    + +    I I+G++NAGKSSL NAL    V    A+ 
Sbjct: 228 RMAKLRREIKAMKQARDTQRSRRLHSDVPSIAIVGYTNAGKSSLLNALTGAGVLVQDALF 287

Query: 248 TDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +  TTR     D D  G      +DT G          E  + T  EV +ADL+L + 
Sbjct: 288 ATLDPTTR-RAEFDPDSNGARPFLFTDTVGFVRHLPTQLVEAFRSTLEEVIDADLLLHVV 346

Query: 307 EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           + +    ++    +  +     +D  +   E  D    S   E  +EL+
Sbjct: 347 DGSDPNPLAQINAVRQVISEVIADEATGGGEASDGRAGSAGAEAPQELL 395


>gi|85703310|ref|ZP_01034414.1| GTP-binding protein HflX [Roseovarius sp. 217]
 gi|85672238|gb|EAQ27095.1| GTP-binding protein HflX [Roseovarius sp. 217]
          Length = 424

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E   ++ M  +S + + L   W                   + +    +  + L  
Sbjct: 119 AATREGVLQVEMAALSYQRTRLVRAWTHLERQRGGLGFVGGPGETQIEADRRAIDDQLVR 178

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +      ++   +  +          + ++G++NAGKS+LFN L   DV    D+   T 
Sbjct: 179 LRRQLEKVAKTRTLHRAARAKVPFPIVALVGYTNAGKSTLFNRLTGADVM-AKDMLFATL 237

Query: 256 DVLTIDLDL--EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           D     + L   G  V +SDT G             + T  EV +ADLI  +++I+  + 
Sbjct: 238 DPTMRRVALPEGGPEVILSDTVGFISDLPTELVAAFRATLEEVLSADLICHVRDISHPET 297

Query: 314 ISFPKNIDFIF-------------IGTKSD----------LYSTYTEEYDHLISSFTGEG 350
           +S  +++  I              I  K D          +     ++    IS+ TG+G
Sbjct: 298 VSQSRDVAAILESLGVSDKTPQIEIWNKIDQLEDEARAAAVTQAERQDDVLAISAITGQG 357

Query: 351 LEELINKIKSILSN 364
           + +L+  I + L++
Sbjct: 358 INDLVAAIGAKLAD 371


>gi|315613462|ref|ZP_07888370.1| GTP-binding protein HflX [Streptococcus sanguinis ATCC 49296]
 gi|315314458|gb|EFU62502.1| GTP-binding protein HflX [Streptococcus sanguinis ATCC 49296]
          Length = 412

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 98/266 (36%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNTLTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + ++      
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTE-----EYDHLISSFTGEGLEEL-INKI 358
            K            +I  + +  K+DL   +T            S  + E L+ L + KI
Sbjct: 296 EKTVLSIMKDLDMEDIPRLTLYNKADLVEDFTPTQTPYALISAKSEDSRENLQALFLEKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 356 KEIFEVFTLRVPFSKSYKIHDLESVA 381


>gi|229013520|ref|ZP_04170654.1| GTP-binding protein era [Bacillus mycoides DSM 2048]
 gi|229061993|ref|ZP_04199319.1| GTP-binding protein era [Bacillus cereus AH603]
 gi|229135125|ref|ZP_04263927.1| GTP-binding protein era [Bacillus cereus BDRD-ST196]
 gi|229169048|ref|ZP_04296764.1| GTP-binding protein era [Bacillus cereus AH621]
 gi|228614457|gb|EEK71566.1| GTP-binding protein era [Bacillus cereus AH621]
 gi|228648354|gb|EEL04387.1| GTP-binding protein era [Bacillus cereus BDRD-ST196]
 gi|228717302|gb|EEL68975.1| GTP-binding protein era [Bacillus cereus AH603]
 gi|228747757|gb|EEL97626.1| GTP-binding protein era [Bacillus mycoides DSM 2048]
          Length = 266

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +D P TTR+ +          V   DT GI +    +    +K     ++  D++L +  
Sbjct: 2   SDKPQTTRNKIQGVYTENDSQVVFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVN 61

Query: 308 INS----KKEISFPK----NIDFIFIGTKSD---------LYSTYTEEYDH----LISSF 346
                   +E    K          +  K D         L   Y + Y+      IS+ 
Sbjct: 62  ATEGYGRGEEFIIEKLQETKQPVFLVINKIDQLHPEQLLELIDQYRKLYEFAEIVPISAL 121

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            G  +E LI  IK  L    +  P +  +     + +S+ +R
Sbjct: 122 DGNNVEALIGAIKKYLPEGPQYYPDNQVTDHPERFIISELIR 163


>gi|260665119|ref|ZP_05865969.1| GTP-binding protein HflX [Lactobacillus jensenii SJ-7A-US]
 gi|260561173|gb|EEX27147.1| GTP-binding protein HflX [Lactobacillus jensenii SJ-7A-US]
          Length = 423

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 85/216 (39%), Gaps = 25/216 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAK- 241
             + + +   I  +K ++ +  +Q  +    RN  K   + ++G++NAGKS+  N L K 
Sbjct: 162 ELNRRTIDKQITAIKKELQNVATQESIKSKRRNNSKLPQVALVGYTNAGKSTTMNGLLKA 221

Query: 242 -----KDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLE 295
                     V ++   T D     ++ +G     ISDT G          E  K T  +
Sbjct: 222 FNNDASKEVFVKNMLFATLDTSVRRINFDGTNDFIISDTVGFISKLPHNLIESFKATLKK 281

Query: 296 VENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEY---D 340
             +ADLI+ + + +    +   K            NI  +    K+DL +    E    D
Sbjct: 282 ASDADLIVNIVDSSDSNMLQMIKTTQKVLHEIGITNIPVVTAYNKADLTNKKFPEIEGND 341

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            L S+   + ++ L   I   + + +K L   +P +
Sbjct: 342 ILYSAKDSKSIKALAKFITKRIFSNYKTLNIELPLN 377


>gi|33862870|ref|NP_894430.1| hypothetical protein PMT0597 [Prochlorococcus marinus str. MIT
           9313]
 gi|33634786|emb|CAE20772.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 532

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 96/237 (40%), Gaps = 26/237 (10%)

Query: 197 LFLKNDISSH-ISQGKLG---EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
             LK++++   + Q +     E+ R    +V+ G  ++GK+SL  AL  + V  V    G
Sbjct: 107 ERLKDEVTREGLKQERERVADELARGDLMVVVFGTGSSGKTSLIRALLNEMVGEVGAPMG 166

Query: 253 TTRDVLTIDLDLEG--YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKE 307
           +T       L L+G    ++++DT GI E        EKE  +R       ADL++++ +
Sbjct: 167 STTSSQIYRLRLKGLDRGLQLADTPGILEAGRAGLSREKEARQRA----SRADLMVVVVD 222

Query: 308 INSKK-EISFPKN-----IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            + +  E+    N        + +  K DL     E           +GL E  + I   
Sbjct: 223 CDLRASELEVISNLANLGKRLLLVLNKCDLRGEEEERRLLAQLRGRCKGLLETEDVI--- 279

Query: 362 LSNKFKKLPFSIPSH-KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
                   P S+P   KR L   ++    L   +      G +++A+N+ L    LG
Sbjct: 280 ---SCSAAPQSLPRPGKRPLQPPAEVDNLLRRLASVLHADGEELLADNILLQCRHLG 333


>gi|82750906|ref|YP_416647.1| GTP-binding protein [Staphylococcus aureus RF122]
 gi|82656437|emb|CAI80858.1| GTP-binding protein [Staphylococcus aureus RF122]
          Length = 419

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 101/265 (38%), Gaps = 25/265 (9%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L S        L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLLSRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        + + ++G++NAGKSS FN LA ++      +   
Sbjct: 180 NEIKHQLRTVEEHRERYRNKRNQNQVFHVALVGYTNAGKSSWFNVLANEETYEKNQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIVAFKSTLEEAKGADLLVHVVDSSHPE 298

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEEL-- 354
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L  
Sbjct: 299 YRTQYDTVNDLIKQLDMNHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVK 358

Query: 355 ---INKIKSILSNKFKKLPFSIPSH 376
              I++IK  L+   + +  +    
Sbjct: 359 TLFIDEIKRQLTYYDEAIATNNADR 383


>gi|15805673|ref|NP_294369.1| GTP-binding protein Era [Deinococcus radiodurans R1]
 gi|13959366|sp|Q9RWM0|ERA_DEIRA RecName: Full=GTPase Era
 gi|6458347|gb|AAF10224.1|AE001922_4 GTP-binding protein Era [Deinococcus radiodurans R1]
          Length = 311

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 79/237 (33%), Gaps = 37/237 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L NA     VA  +  P TTR  +     L+   +   DT G+ +  
Sbjct: 20  VAIVGKPNVGKSTLLNAFLGTKVAPTSPRPQTTRRGVRGIYTLDNRQLIFVDTPGLHKPK 79

Query: 282 DIVEKEG---IKRTFLEVENADLILLLKEINSKKEISFPKN-----IDFIFIGTKSDLYS 333
           D + K     +     +V+    ++ L+   + ++     +          +G K+D   
Sbjct: 80  DALGKYMNSEVHSALSDVDAVVWVVDLRHPPTDEDRLVANSVRDLPKPLFLVGNKTDAAK 139

Query: 334 TYTEEYDHLISSFTGEG------------------LEELINKIKSILSNKFKKLPFSIPS 375
              E      +   G G                  +  L  ++  +L       P    S
Sbjct: 140 YPEEAMKLYGALLEGRGSDLPVSETMLSAQNSVNAVATLREQLLEVLPENPFFFPQGAAS 199

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDI------IAENLRLASVSLGKITGCVDVE 426
            +      ++ +R   M  L + +    +        E  R     L +I G + VE
Sbjct: 200 DQSREMWAAEIIREEAMKKLRD-ELPYAVATRVNRWTE--RE--DGLQRIEGEIIVE 251


>gi|312622218|ref|YP_004023831.1| small GTP-binding protein [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202685|gb|ADQ46012.1| small GTP-binding protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 607

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 21/165 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G+ N GKS +FN L  + V  V++ PGTT DV             I DT G+    
Sbjct: 19  IALVGNPNVGKSVIFNRLTGRYV-EVSNYPGTTVDVNYGFY----KDYVIVDTPGVYGIS 73

Query: 282 DIVEKEGIKR-----TFLEVENADLI-----LLLKE--INSKKEISFPKNIDFIFIGT-- 327
              ++E + R     T   +   D +     L L +  I+ +KE+    N+         
Sbjct: 74  SFNDEEIVTRDIVLNTQKVINVVDSVHLDRDLFLTQQLIDYQKEVIVVLNMVDEVEKNNI 133

Query: 328 --KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
               D           + S+  G G+++L   I   L  K K  P
Sbjct: 134 TIDIDKLKESLGVEVIVTSASKGIGIDKLREAIDKNLFKKGKITP 178


>gi|307706254|ref|ZP_07643068.1| GTP-binding proten HflX [Streptococcus mitis SK321]
 gi|307618345|gb|EFN97498.1| GTP-binding proten HflX [Streptococcus mitis SK321]
          Length = 412

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 99/266 (37%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNTLTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + ++      
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTE-----EYDHLISSFTGEGLEEL-INKI 358
            K            +I  + +  K+DL   +T            S  + E L+ L + KI
Sbjct: 296 EKTVLSIMKDLDMEDIPRLTLYNKADLVEDFTPTQTPYALISAKSEDSRENLQALFLEKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I  +   ++PFS       L  ++
Sbjct: 356 KDIFESFTLRVPFSKSYKIHDLESVA 381


>gi|26251065|ref|NP_757105.1| putative GTPase HflX [Escherichia coli CFT073]
 gi|91213722|ref|YP_543708.1| putative GTPase HflX [Escherichia coli UTI89]
 gi|110644530|ref|YP_672260.1| putative GTPase HflX [Escherichia coli 536]
 gi|170766941|ref|ZP_02901394.1| GTP-binding protein HflX [Escherichia albertii TW07627]
 gi|191174526|ref|ZP_03036024.1| GTP-binding protein HflX [Escherichia coli F11]
 gi|215489517|ref|YP_002331948.1| putative GTPase HflX [Escherichia coli O127:H6 str. E2348/69]
 gi|218561332|ref|YP_002394245.1| GTPase HflX [Escherichia coli S88]
 gi|218692507|ref|YP_002400719.1| putative GTPase HflX [Escherichia coli ED1a]
 gi|227886784|ref|ZP_04004589.1| GTPase HflX [Escherichia coli 83972]
 gi|237703840|ref|ZP_04534321.1| GTP-binding protein hflX [Escherichia sp. 3_2_53FAA]
 gi|300987262|ref|ZP_07178091.1| GTP-binding protein HflX [Escherichia coli MS 45-1]
 gi|300988650|ref|ZP_07178790.1| GTP-binding protein HflX [Escherichia coli MS 200-1]
 gi|301045955|ref|ZP_07193139.1| GTP-binding protein HflX [Escherichia coli MS 185-1]
 gi|306815612|ref|ZP_07449761.1| putative GTPase HflX [Escherichia coli NC101]
 gi|331650298|ref|ZP_08351370.1| GTP-binding protein HflX [Escherichia coli M605]
 gi|331660748|ref|ZP_08361680.1| GTP-binding protein HflX [Escherichia coli TA206]
 gi|26111497|gb|AAN83679.1|AE016771_190 GTP-binding protein hflX [Escherichia coli CFT073]
 gi|91075296|gb|ABE10177.1| GTP-binding protein HflX [Escherichia coli UTI89]
 gi|110346122|gb|ABG72359.1| GTP-binding protein HflX [Escherichia coli 536]
 gi|170124379|gb|EDS93310.1| GTP-binding protein HflX [Escherichia albertii TW07627]
 gi|190905206|gb|EDV64847.1| GTP-binding protein HflX [Escherichia coli F11]
 gi|215267589|emb|CAS12044.1| predicted GTPase [Escherichia coli O127:H6 str. E2348/69]
 gi|218368101|emb|CAR05908.1| putative GTPase [Escherichia coli S88]
 gi|218430071|emb|CAR10916.1| putative GTPase [Escherichia coli ED1a]
 gi|222035943|emb|CAP78688.1| GTP-binding protein hflX [Escherichia coli LF82]
 gi|226901752|gb|EEH88011.1| GTP-binding protein hflX [Escherichia sp. 3_2_53FAA]
 gi|227836357|gb|EEJ46823.1| GTPase HflX [Escherichia coli 83972]
 gi|281181269|dbj|BAI57599.1| hypothetical phage protein [Escherichia coli SE15]
 gi|294491581|gb|ADE90337.1| GTP-binding protein HflX [Escherichia coli IHE3034]
 gi|300302038|gb|EFJ58423.1| GTP-binding protein HflX [Escherichia coli MS 185-1]
 gi|300305883|gb|EFJ60403.1| GTP-binding protein HflX [Escherichia coli MS 200-1]
 gi|300407739|gb|EFJ91277.1| GTP-binding protein HflX [Escherichia coli MS 45-1]
 gi|305851274|gb|EFM51729.1| putative GTPase HflX [Escherichia coli NC101]
 gi|307556340|gb|ADN49115.1| GTP-binding protein HflX [Escherichia coli ABU 83972]
 gi|307629244|gb|ADN73548.1| putative GTPase HflX [Escherichia coli UM146]
 gi|312948822|gb|ADR29649.1| putative GTPase HflX [Escherichia coli O83:H1 str. NRG 857C]
 gi|315288454|gb|EFU47852.1| GTP-binding protein HflX [Escherichia coli MS 110-3]
 gi|315293545|gb|EFU52897.1| GTP-binding protein HflX [Escherichia coli MS 153-1]
 gi|315299054|gb|EFU58308.1| GTP-binding protein HflX [Escherichia coli MS 16-3]
 gi|323189948|gb|EFZ75226.1| GTP-binding proten HflX [Escherichia coli RN587/1]
 gi|323950758|gb|EGB46636.1| GTP-binding protein HflX [Escherichia coli H252]
 gi|323955460|gb|EGB51224.1| GTP-binding protein HflX [Escherichia coli H263]
 gi|324013815|gb|EGB83034.1| GTP-binding protein HflX [Escherichia coli MS 60-1]
 gi|330908515|gb|EGH37034.1| GTP-binding protein HflX [Escherichia coli AA86]
 gi|331040692|gb|EGI12850.1| GTP-binding protein HflX [Escherichia coli M605]
 gi|331051790|gb|EGI23829.1| GTP-binding protein HflX [Escherichia coli TA206]
          Length = 426

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|71893508|ref|YP_278954.1| GTP-binding protein Era [Mycoplasma hyopneumoniae J]
 gi|71851635|gb|AAZ44243.1| GTP-binding protein [Mycoplasma hyopneumoniae J]
          Length = 293

 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N+L +  V+IV+    TTRD +    + +   +   DT G     
Sbjct: 9   VAIVGLPNVGKSSLINSLVEFPVSIVSLKSQTTRDAINAIYNKDNLQILFVDTPGFHMRI 68

Query: 282 D---IVEKEGIKRTFLEVENADLILLLKEINSKKEI-------SFPKNIDFIFIGTKSDL 331
           +         I  T   +   DL+L L  ++   +           KN++ I + TK+DL
Sbjct: 69  NNLSNSLNYAINSTLEGI---DLVLFLHPVDKPVDQNTRFLAKKIAKNMNKIVLITKTDL 125


>gi|54020101|ref|YP_115739.1| GTP-binding protein Era [Mycoplasma hyopneumoniae 232]
 gi|72080495|ref|YP_287553.1| GTP-binding protein Era [Mycoplasma hyopneumoniae 7448]
 gi|53987274|gb|AAV27475.1| GTP-binding protein era homolog [Mycoplasma hyopneumoniae 232]
 gi|71913619|gb|AAZ53530.1| GTP-binding protein [Mycoplasma hyopneumoniae 7448]
          Length = 293

 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N+L +  V+IV+    TTRD +    + +   +   DT G     
Sbjct: 9   VAIVGLPNVGKSSLINSLVEFPVSIVSLKSQTTRDAINAIYNKDNLQILFVDTPGFHMRI 68

Query: 282 D---IVEKEGIKRTFLEVENADLILLLKEINSKKEI-------SFPKNIDFIFIGTKSDL 331
           +         I  T   +   DL+L L  ++   +           KN++ I + TK+DL
Sbjct: 69  NNLSNSLNYAINSTLEGI---DLVLFLHPVDKPVDQNTRFLAKKIAKNMNKIVLITKTDL 125


>gi|283786852|ref|YP_003366717.1| GTP-binding protein [Citrobacter rodentium ICC168]
 gi|282950306|emb|CBG89953.1| GTP-binding protein [Citrobacter rodentium ICC168]
          Length = 426

 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIL 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLEKVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNQIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +++  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIDAVDTVLEEIDAHEIPTLMVMNKIDMLDDFAPRIDRDEENKPIRVWLSAQTGAGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|153006942|ref|YP_001381267.1| ferrous iron transport protein B [Anaeromyxobacter sp. Fw109-5]
 gi|152030515|gb|ABS28283.1| ferrous iron transport protein B [Anaeromyxobacter sp. Fw109-5]
          Length = 738

 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + + G+ N+GKS+L NA+A      V + PG T +     L+  G  +++ D  G   
Sbjct: 21  LTVAVAGNPNSGKSTLINAIAGS-RLHVGNWPGVTVEKKEASLEHGGRRIRLVDLPGTYS 79

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
                ++E + R +L  E  D+I+ + +  + +
Sbjct: 80  LSPYSQEEIVARDYLAHERPDVIVNVVDATNLE 112


>gi|320169486|gb|EFW46385.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 469

 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 61/139 (43%), Gaps = 15/139 (10%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
             Q K  E++R    + ++G  NAGKSS+ N++  + V+IV+    +TR+ +        
Sbjct: 184 FEQPKDSELVR----VAVIGAPNAGKSSIVNSIVGRTVSIVSSRSQSTRERILGIATRAN 239

Query: 267 YLVKISDTAG-IRETDDIVEKEGIK---RTFLEVENADLILLLKEIN-----SKKEISFP 317
             + + DT G +R         G +    +   +  AD+ +++ +++     +  ++   
Sbjct: 240 KQMVLFDTPGLLRFNFSRRIPIGRELSPESTRALLEADVSMVVYDVSKPLTPADHDLFAA 299

Query: 318 KNIDF--IFIGTKSDLYST 334
           +N     I +  K DL   
Sbjct: 300 RNYPREAILVLNKVDLAPK 318


>gi|325181428|emb|CCA15844.1| conserved hypothetical protein [Albugo laibachii Nc14]
 gi|325193041|emb|CCA27412.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 458

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 98/260 (37%), Gaps = 29/260 (11%)

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
              ++   + E++     + ++  +  + + M  +   LY +       I   +E +L  
Sbjct: 53  MRKRMAQAQFEAIEQ--DAMSKKSKLQAKDQMRMKRLGLYPE-----KDISGGLEDEL-G 104

Query: 179 SEEEDVQNFSSK----EVLNDILFLKNDISSHIS-QGKLGEIIRN--GYKIVILGHSNAG 231
           SE  D +    +    E       LK+   + ++ +    +  RN    ++ ++G  NAG
Sbjct: 105 SELHDQKWIPRRRVTSEENKKFTNLKDAPEAVLNREFNEPDEPRNSKALEVAVIGRPNAG 164

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           KSS+ N L + +V+ V+    TTR+ +   L  +   +   DT G+ +  +         
Sbjct: 165 KSSIINFLLRSNVSAVSQKYNTTRERVLGVLTEKNTQITFHDTPGLIKPQESHLYVRSLV 224

Query: 292 TFLE--VENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTE 337
           T     VE+ DL LL+ +   + + S  +                + +  K DL      
Sbjct: 225 TTAADTVESVDLSLLVVDAVKRLDDSALQAMEKILIGSAQVGAPTMLVMNKYDLVRERDL 284

Query: 338 EYDHLISSFTGEGLEELINK 357
           +   +        +EE+  K
Sbjct: 285 KSVDIRIGVLSTMIEEIYQK 304


>gi|307704486|ref|ZP_07641395.1| GTP-binding proten HflX [Streptococcus mitis SK597]
 gi|307621955|gb|EFO00983.1| GTP-binding proten HflX [Streptococcus mitis SK597]
          Length = 412

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 98/266 (36%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNTLTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + ++      
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTE-----EYDHLISSFTGEGLEEL-INKI 358
            K            +I  + +  K+DL   +T            S  + E L+ L + KI
Sbjct: 296 EKTVLSIMKDLDMEDIPRLTLYNKADLVEDFTPTQTPYALISAKSEDSRENLQALFLEKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 356 KEIFEVFTLRVPFSKSYKIHDLESVA 381


>gi|86134603|ref|ZP_01053185.1| GTP-binding protein HflX [Polaribacter sp. MED152]
 gi|85821466|gb|EAQ42613.1| GTP-binding protein HflX [Polaribacter sp. MED152]
          Length = 403

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 18/238 (7%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L       I +    +    G   ++ ++G++N GKS+L N ++
Sbjct: 161 ETEIETDRRIIRDKITLLKKRLKTIDKQMAVQRKNRGKMVRVALVGYTNVGKSTLMNVVS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K DV    +    T D     + ++     ++DT G          E  K T  EV  AD
Sbjct: 221 KSDV-FAENKLFATLDTTVRKVVIKNIPFLMTDTVGFIRKLPTQLVESFKSTLDEVREAD 279

Query: 301 LILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           L+L + +I+                     +   + +  K D Y   T E D  + +  G
Sbjct: 280 LLLHVVDISHPNFEDHIASVNSILTDIKCADKPTLMVFNKIDAYQHETIEED-DLETEKG 338

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DII 405
           +    L +  K+ +++   +  F    +K +L    +   Y E+  ++ +     D +
Sbjct: 339 KEHYTLQDWKKTWMNDNEVESIFISALNKENLEDFKE-KTYEEVKKIHIQRFPYNDFL 395


>gi|120555679|ref|YP_960030.1| GTP-binding protein, HSR1-related [Marinobacter aquaeolei VT8]
 gi|120325528|gb|ABM19843.1| GTP-binding protein, HSR1-related protein [Marinobacter aquaeolei
           VT8]
          Length = 432

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 92/253 (36%), Gaps = 25/253 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +E + 
Sbjct: 114 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRERIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+      +   + ++G++NAGKS+LFN +    V    D    T
Sbjct: 173 SIHRRLEKVRKQRDQGRRARKRADIPTLSLVGYTNAGKSTLFNRITTSSV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKK 312
            D     L+L     V ++DT G          E  + T  E   A L+L + +  +S++
Sbjct: 232 LDPTLRRLELPDIGPVVMADTVGFIRHLPHKLVEAFRATLEETTQATLLLHVIDCHDSRR 291

Query: 313 EISFPK-----------NIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLE 352
           + +  +            I  + +  K DL   +    D           +S+ +GEGL 
Sbjct: 292 DENIEQVESVLAEIGADEIPMLQVFNKIDLLDGFEPRIDRNEEGLPVRAWVSAVSGEGLP 351

Query: 353 ELINKIKSILSNK 365
            L + I   L+  
Sbjct: 352 LLFDAIVERLAED 364


>gi|315290912|gb|EFU50281.1| conserved hypothetical protein [Escherichia coli MS 153-1]
          Length = 251

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 28/227 (12%)

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
            I+G S AGKSSL NAL + +V  V+D+   TR+V    L   GY + I+D  G+ E+ D
Sbjct: 1   GIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLSGHGYSMVITDLPGVGESRD 60

Query: 283 IV-EKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
              E E + R    +   DL+L L + + +         + I    +   +F+ T++D  
Sbjct: 61  RDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFWRHILQCGHQQVLFVVTQAD-K 117

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
           +    E+D      +    + +  K    +   F+ +   +    R  + +   V  L  
Sbjct: 118 TEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHPVVAVSARTGWEVDTLVSALMT 176

Query: 393 ASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
           A  +     L      ++  E++R  +    + TG V      D IF
Sbjct: 177 ALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV------DRIF 215


>gi|110668265|ref|YP_658076.1| GTP-binding protein [Haloquadratum walsbyi DSM 16790]
 gi|109626012|emb|CAJ52460.1| GTP-binding protein [Haloquadratum walsbyi DSM 16790]
          Length = 561

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 82/231 (35%), Gaps = 40/231 (17%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHIS--QGKLGEIIRNGYK-IVILGHSNAGKSS 234
           F    +      +++ + I  +  ++ +     Q +  +   +G+  + + G++NAGKS+
Sbjct: 145 FMGLGEYDESRERDIKSQISRISQELDAIAEKEQTRREQRRESGFDLVALAGYTNAGKST 204

Query: 235 LFNALAK--------------KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           L   LA               +  A   D   TT    T   D     V ++DT G    
Sbjct: 205 LLRRLADDLDITENKNRHPDLEQTAESEDRLFTTLGTTTRRADTGRRDVLLTDTVGFVSD 264

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTK 328
                 E  + T   V  ADL+LL+ + +   +    K                + +  K
Sbjct: 265 LPHWLVESFESTLDSVYRADLVLLVVDASESIDAMREKLITSHDTLYERNEAPIVTVLNK 324

Query: 329 SDLYSTYTEEY-----------DHLISSFTGEGLEELINKIKSILSNKFKK 368
           +D       +               +S  TGE +E+L N+I++ L +   +
Sbjct: 325 TDCVEEGELDRKMQSLDALAPNPVAVSGLTGENIEQLTNRIENELPSWHDE 375


>gi|82546586|ref|YP_410533.1| GTPase HflX [Shigella boydii Sb227]
 gi|187731219|ref|YP_001882864.1| putative GTPase HflX [Shigella boydii CDC 3083-94]
 gi|81247997|gb|ABB68705.1| GTP-binding subunit of protease [Shigella boydii Sb227]
 gi|187428211|gb|ACD07485.1| GTP-binding protein HflX [Shigella boydii CDC 3083-94]
 gi|320173673|gb|EFW48863.1| GTP-binding protein HflX [Shigella dysenteriae CDC 74-1112]
 gi|320187051|gb|EFW61762.1| GTP-binding protein HflX [Shigella flexneri CDC 796-83]
 gi|332087034|gb|EGI92168.1| GTP-binding proten HflX [Shigella boydii 3594-74]
          Length = 426

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|91227452|ref|ZP_01261816.1| GTP-binding protein HflX [Vibrio alginolyticus 12G01]
 gi|254230082|ref|ZP_04923480.1| GTPase of unknown function subfamily, putative [Vibrio sp. Ex25]
 gi|262393034|ref|YP_003284888.1| GTP-binding protein HflX [Vibrio sp. Ex25]
 gi|269967705|ref|ZP_06181754.1| GTP-binding protein HflX [Vibrio alginolyticus 40B]
 gi|91188602|gb|EAS74893.1| GTP-binding protein HflX [Vibrio alginolyticus 12G01]
 gi|151937416|gb|EDN56276.1| GTPase of unknown function subfamily, putative [Vibrio sp. Ex25]
 gi|262336628|gb|ACY50423.1| GTP-binding protein HflX [Vibrio sp. Ex25]
 gi|269827683|gb|EEZ81968.1| GTP-binding protein HflX [Vibrio alginolyticus 40B]
          Length = 429

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 94/269 (34%), Gaps = 31/269 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + + +
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRD 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   +     Q + G   RN      + ++G++NAGKS+LFN + +  V    D  
Sbjct: 170 RIKAILRRLDKVAKQREQGRRARNRAEIPTVSLVGYTNAGKSTLFNRITEAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     ++L       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKIELADVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASD 288

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGE 349
           ++            E      +  + +  K D   +     +           +S+  G 
Sbjct: 289 ERFRENIQAVHEVLEEIDAHEVPTLVVMNKIDNLDSQKPRIERDEEGVPRAVWVSAMDGL 348

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKR 378
           G++ L   +   L+++  +    IP   +
Sbjct: 349 GIDVLFEALTERLASQMVEHQLRIPPQYQ 377


>gi|309702300|emb|CBJ01620.1| putative ATP/GTP-binding protein [Escherichia coli ETEC H10407]
          Length = 290

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 101/248 (40%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMIITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K  ++        P 
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREKTDAVFRLFRPVHPV 195

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
              S       L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 196 VAVSACTGWE-LDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|157154877|ref|YP_001465819.1| putative GTPase [Escherichia coli E24377A]
 gi|157076907|gb|ABV16615.1| putative GTPase [Escherichia coli E24377A]
          Length = 290

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 101/248 (40%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMIITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K  ++        P 
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREKTDAVFRLFRPVHPV 195

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
              S       L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 196 VAVSACTGWE-LDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|14521287|ref|NP_126762.1| GTP-binding protein hflx [Pyrococcus abyssi GE5]
 gi|5458505|emb|CAB49993.1| hflX-like GTP-binding protein hflx [Pyrococcus abyssi GE5]
          Length = 423

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 78/218 (35%), Gaps = 34/218 (15%)

Query: 189 SKEVLNDILFLKNDISSHISQG--KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVA 245
            K +   +  +K+++    S+   +  +    G+  + + G++NAGKS+L NAL+  D  
Sbjct: 152 FKHIRYRMGKIKDELEKIRSEREIRRKKREEEGFVLVALAGYTNAGKSTLLNALSG-DYV 210

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
              +   TT    T    + G ++ ++DT G  +       E    T  E+  AD+I+L+
Sbjct: 211 EAKNQMFTTLSTTTRRFRVRGKMLLVTDTVGFIDGLPPFIVEAFHSTLEEIVKADIIVLV 270

Query: 306 KEINSKKEISFPK--------------NIDFIFIGTKSDLYST----------------Y 335
            + +        K              +   I    K DL S                  
Sbjct: 271 LDASEPWREVRRKFFASLDVLRELKALDRPMIIALNKIDLVSEEDVQEKELLLRELLDGR 330

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           T        S   + LEEL   I   L+   K   F I
Sbjct: 331 TNAIGIAKISAKHKKLEELYELIDRALTKLPKFQTFEI 368


>gi|284928710|ref|YP_003421232.1| small GTP-binding protein domain protein [cyanobacterium UCYN-A]
 gi|284809169|gb|ADB94874.1| small GTP-binding protein domain protein [cyanobacterium UCYN-A]
          Length = 437

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 76/181 (41%), Gaps = 16/181 (8%)

Query: 195 DILFLKNDISSHISQGKLG--EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           + L LK  I   +   +LG   +  N  KI I G  + GKS++ NAL  +++     I G
Sbjct: 24  NNLELKASIKKELQVIELGLERVNNNVIKIAIFGLVSRGKSAIVNALVGQNIFNSEPING 83

Query: 253 TTRDVLTIDLDLEGYLVKI--SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL----- 305
           TT+   +         V +   DT G+ E D I +      +    E +DLIL +     
Sbjct: 84  TTKWPKSFRWFPSDTKVILEFIDTPGLDEIDGIQKSIM---SQEVAEESDLILFVISEDI 140

Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYT--EEYDHLIS-SFTGEGLEELINKIKSI 361
            E+  K  I   K     I +  K DLY   T  + Y HL   S   +  E L+  I+ I
Sbjct: 141 IEVEYKALIYLKKLLKPIILVFNKIDLYPKKTCLDIYKHLQEFSKNIKNEEALLINIQDI 200

Query: 362 L 362
           L
Sbjct: 201 L 201


>gi|154706483|ref|YP_001424421.1| GTP-binding protein [Coxiella burnetii Dugway 5J108-111]
 gi|165918612|ref|ZP_02218698.1| GTP-binding proten HflX [Coxiella burnetii RSA 334]
 gi|154355769|gb|ABS77231.1| GTP-binding protein [Coxiella burnetii Dugway 5J108-111]
 gi|165917740|gb|EDR36344.1| GTP-binding proten HflX [Coxiella burnetii RSA 334]
          Length = 454

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 23/178 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           + ++G++NAGKS+LFNA+ + +V    D    T D     L+L     + + DT G    
Sbjct: 206 VSLVGYTNAGKSTLFNAITEANV-YTADQLFATLDPTFRQLELPTLGKIILVDTVGFIRD 264

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTK 328
                    + T  E   ADL+L + + +S              E    + +  +FI  K
Sbjct: 265 LPHDLIAAFRATLEESRQADLLLHVVDAHSPDSSVMLEEVQKVLETIGAEEVPQLFIYNK 324

Query: 329 SDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            DL  +     D+          +S+ TG G++ L   I  +L +       ++ +++
Sbjct: 325 IDLLESRKPRIDYDEKGKPRRVWLSALTGVGIDLLNPAIVELLGDTILTCEVTLEANE 382


>gi|24115528|ref|NP_710038.1| putative GTPase HflX [Shigella flexneri 2a str. 301]
 gi|30065545|ref|NP_839716.1| putative GTPase HflX [Shigella flexneri 2a str. 2457T]
 gi|24054856|gb|AAN45745.1| GTP-binding subunit of protease specific for phage lambda cII
           repressor [Shigella flexneri 2a str. 301]
 gi|30043809|gb|AAP19528.1| GTP-binding subunit of protease specific for phage lambda cII
           repressor [Shigella flexneri 2a str. 2457T]
 gi|281603635|gb|ADA76619.1| GTP-binding subunit of protease specific for phage lambda cII
           repressor [Shigella flexneri 2002017]
 gi|313646352|gb|EFS10814.1| GTP-binding proten HflX [Shigella flexneri 2a str. 2457T]
 gi|332749049|gb|EGJ79472.1| GTP-binding proten HflX [Shigella flexneri K-671]
 gi|332749318|gb|EGJ79739.1| GTP-binding proten HflX [Shigella flexneri 4343-70]
 gi|332761879|gb|EGJ92153.1| GTP-binding proten HflX [Shigella flexneri 2747-71]
 gi|332763221|gb|EGJ93464.1| GTP-binding proten HflX [Shigella flexneri 2930-71]
 gi|333011969|gb|EGK31354.1| GTP-binding proten HflX [Shigella flexneri K-304]
          Length = 426

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|15804762|ref|NP_290803.1| putative GTPase HflX [Escherichia coli O157:H7 EDL933]
 gi|15834403|ref|NP_313176.1| GTPase HflX [Escherichia coli O157:H7 str. Sakai]
 gi|74314658|ref|YP_313077.1| putative GTPase HflX [Shigella sonnei Ss046]
 gi|157155239|ref|YP_001465671.1| putative GTPase HflX [Escherichia coli E24377A]
 gi|157163636|ref|YP_001460954.1| putative GTPase HflX [Escherichia coli HS]
 gi|168751477|ref|ZP_02776499.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4113]
 gi|168754742|ref|ZP_02779749.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4401]
 gi|168766450|ref|ZP_02791457.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4486]
 gi|168774116|ref|ZP_02799123.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4196]
 gi|168780603|ref|ZP_02805610.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4076]
 gi|168784808|ref|ZP_02809815.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC869]
 gi|168801826|ref|ZP_02826833.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC508]
 gi|170021817|ref|YP_001726771.1| putative GTPase HflX [Escherichia coli ATCC 8739]
 gi|170681964|ref|YP_001746568.1| putative GTPase HflX [Escherichia coli SMS-3-5]
 gi|188496314|ref|ZP_03003584.1| GTP-binding protein HflX [Escherichia coli 53638]
 gi|191165587|ref|ZP_03027427.1| GTP-binding protein HflX [Escherichia coli B7A]
 gi|193066018|ref|ZP_03047076.1| GTP-binding protein HflX [Escherichia coli E22]
 gi|193070873|ref|ZP_03051805.1| GTP-binding protein HflX [Escherichia coli E110019]
 gi|194426608|ref|ZP_03059162.1| GTP-binding protein HflX [Escherichia coli B171]
 gi|194434600|ref|ZP_03066857.1| GTP-binding protein HflX [Shigella dysenteriae 1012]
 gi|194439513|ref|ZP_03071587.1| GTP-binding protein HflX [Escherichia coli 101-1]
 gi|195935963|ref|ZP_03081345.1| putative GTPase HflX [Escherichia coli O157:H7 str. EC4024]
 gi|208807477|ref|ZP_03249814.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4206]
 gi|208813758|ref|ZP_03255087.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4045]
 gi|208819504|ref|ZP_03259824.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4042]
 gi|209396581|ref|YP_002273715.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4115]
 gi|209921661|ref|YP_002295745.1| putative GTPase HflX [Escherichia coli SE11]
 gi|217325358|ref|ZP_03441442.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. TW14588]
 gi|218551443|ref|YP_002385235.1| GTPase HflX [Escherichia fergusonii ATCC 35469]
 gi|218556725|ref|YP_002389639.1| putative GTPase HflX [Escherichia coli IAI1]
 gi|218697922|ref|YP_002405589.1| putative GTPase HflX [Escherichia coli 55989]
 gi|218702870|ref|YP_002410499.1| putative GTPase HflX [Escherichia coli IAI39]
 gi|218707784|ref|YP_002415303.1| putative GTPase HflX [Escherichia coli UMN026]
 gi|253775202|ref|YP_003038033.1| GTPase HflX [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037187|ref|ZP_04871264.1| GTP-binding protein HflX [Escherichia sp. 1_1_43]
 gi|254164102|ref|YP_003047210.1| putative GTPase HflX [Escherichia coli B str. REL606]
 gi|254796192|ref|YP_003081029.1| putative GTPase HflX [Escherichia coli O157:H7 str. TW14359]
 gi|256019818|ref|ZP_05433683.1| putative GTPase HflX [Shigella sp. D9]
 gi|256025108|ref|ZP_05438973.1| putative GTPase HflX [Escherichia sp. 4_1_40B]
 gi|260847003|ref|YP_003224781.1| putative GTPase HflX [Escherichia coli O103:H2 str. 12009]
 gi|260870919|ref|YP_003237321.1| putative GTPase HflX [Escherichia coli O111:H- str. 11128]
 gi|261225293|ref|ZP_05939574.1| predicted GTPase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255455|ref|ZP_05947988.1| putative GTPase HflX [Escherichia coli O157:H7 str. FRIK966]
 gi|291285585|ref|YP_003502403.1| GTP-binding protein HflX [Escherichia coli O55:H7 str. CB9615]
 gi|293402800|ref|ZP_06646897.1| GTPase HflX [Escherichia coli FVEC1412]
 gi|293407900|ref|ZP_06651740.1| GTP-binding protein HflX [Escherichia coli B354]
 gi|293417676|ref|ZP_06660298.1| GTP-binding protein HflX [Escherichia coli B185]
 gi|293476484|ref|ZP_06664892.1| GTP-binding protein HflX [Escherichia coli B088]
 gi|297517575|ref|ZP_06935961.1| putative GTPase HflX [Escherichia coli OP50]
 gi|298378330|ref|ZP_06988214.1| GTP-binding protein HflX [Escherichia coli FVEC1302]
 gi|300816527|ref|ZP_07096748.1| GTP-binding protein HflX [Escherichia coli MS 107-1]
 gi|300821264|ref|ZP_07101412.1| GTP-binding protein HflX [Escherichia coli MS 119-7]
 gi|300899711|ref|ZP_07117937.1| GTP-binding protein HflX [Escherichia coli MS 198-1]
 gi|300906002|ref|ZP_07123726.1| GTP-binding protein HflX [Escherichia coli MS 84-1]
 gi|300920803|ref|ZP_07137204.1| GTP-binding protein HflX [Escherichia coli MS 115-1]
 gi|300922421|ref|ZP_07138541.1| GTP-binding protein HflX [Escherichia coli MS 182-1]
 gi|300929280|ref|ZP_07144756.1| GTP-binding protein HflX [Escherichia coli MS 187-1]
 gi|300940660|ref|ZP_07155221.1| GTP-binding protein HflX [Escherichia coli MS 21-1]
 gi|300949132|ref|ZP_07163174.1| GTP-binding protein HflX [Escherichia coli MS 116-1]
 gi|300957832|ref|ZP_07170010.1| GTP-binding protein HflX [Escherichia coli MS 175-1]
 gi|301023429|ref|ZP_07187212.1| GTP-binding protein HflX [Escherichia coli MS 69-1]
 gi|301027995|ref|ZP_07191279.1| GTP-binding protein HflX [Escherichia coli MS 196-1]
 gi|301302589|ref|ZP_07208719.1| GTP-binding protein HflX [Escherichia coli MS 124-1]
 gi|301325936|ref|ZP_07219357.1| GTP-binding protein HflX [Escherichia coli MS 78-1]
 gi|301646618|ref|ZP_07246484.1| GTP-binding protein HflX [Escherichia coli MS 146-1]
 gi|307140867|ref|ZP_07500223.1| putative GTPase HflX [Escherichia coli H736]
 gi|307314879|ref|ZP_07594471.1| GTP-binding proten HflX [Escherichia coli W]
 gi|309796984|ref|ZP_07691384.1| GTP-binding protein HflX [Escherichia coli MS 145-7]
 gi|312965846|ref|ZP_07780072.1| GTP-binding proten HflX [Escherichia coli 2362-75]
 gi|312974019|ref|ZP_07788190.1| GTP-binding proten HflX [Escherichia coli 1827-70]
 gi|331644920|ref|ZP_08346037.1| GTP-binding protein HflX [Escherichia coli H736]
 gi|331656001|ref|ZP_08356989.1| GTP-binding protein HflX [Escherichia coli M718]
 gi|331665837|ref|ZP_08366731.1| GTP-binding protein HflX [Escherichia coli TA143]
 gi|331671078|ref|ZP_08371911.1| GTP-binding protein HflX [Escherichia coli TA271]
 gi|331680303|ref|ZP_08380962.1| GTP-binding protein HflX [Escherichia coli H591]
 gi|331681192|ref|ZP_08381829.1| GTP-binding protein HflX [Escherichia coli H299]
 gi|332280957|ref|ZP_08393370.1| GTP-binding protein HflX [Shigella sp. D9]
 gi|12519158|gb|AAG59369.1|AE005650_8 GTP - binding subunit of protease specific for phage lambda cII
           repressor [Escherichia coli O157:H7 str. EDL933]
 gi|13364626|dbj|BAB38572.1| GTP - binding subunit of protease specific for phage lambda cII
           repressor [Escherichia coli O157:H7 str. Sakai]
 gi|73858135|gb|AAZ90842.1| GTP-binding subunit of protease specific for phage lambda cII
           repressor [Shigella sonnei Ss046]
 gi|157069316|gb|ABV08571.1| GTP-binding protein HflX [Escherichia coli HS]
 gi|157077269|gb|ABV16977.1| GTP-binding protein HflX [Escherichia coli E24377A]
 gi|169756745|gb|ACA79444.1| GTP-binding proten HflX [Escherichia coli ATCC 8739]
 gi|170519682|gb|ACB17860.1| GTP-binding protein HflX [Escherichia coli SMS-3-5]
 gi|187770244|gb|EDU34088.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4196]
 gi|188014507|gb|EDU52629.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4113]
 gi|188491513|gb|EDU66616.1| GTP-binding protein HflX [Escherichia coli 53638]
 gi|189001638|gb|EDU70624.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4076]
 gi|189357854|gb|EDU76273.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4401]
 gi|189364080|gb|EDU82499.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4486]
 gi|189374971|gb|EDU93387.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC869]
 gi|189376070|gb|EDU94486.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC508]
 gi|190904282|gb|EDV63991.1| GTP-binding protein HflX [Escherichia coli B7A]
 gi|192926341|gb|EDV80977.1| GTP-binding protein HflX [Escherichia coli E22]
 gi|192955819|gb|EDV86290.1| GTP-binding protein HflX [Escherichia coli E110019]
 gi|194415347|gb|EDX31615.1| GTP-binding protein HflX [Escherichia coli B171]
 gi|194417185|gb|EDX33297.1| GTP-binding protein HflX [Shigella dysenteriae 1012]
 gi|194421512|gb|EDX37525.1| GTP-binding protein HflX [Escherichia coli 101-1]
 gi|208727278|gb|EDZ76879.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4206]
 gi|208735035|gb|EDZ83722.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4045]
 gi|208739627|gb|EDZ87309.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4042]
 gi|209157981|gb|ACI35414.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC4115]
 gi|209750268|gb|ACI73441.1| GTP - binding subunit of protease specific for phage lambda cII
           repressor [Escherichia coli]
 gi|209750270|gb|ACI73442.1| GTP - binding subunit of protease specific for phage lambda cII
           repressor [Escherichia coli]
 gi|209750272|gb|ACI73443.1| GTP - binding subunit of protease specific for phage lambda cII
           repressor [Escherichia coli]
 gi|209750274|gb|ACI73444.1| GTP - binding subunit of protease specific for phage lambda cII
           repressor [Escherichia coli]
 gi|209750276|gb|ACI73445.1| GTP - binding subunit of protease specific for phage lambda cII
           repressor [Escherichia coli]
 gi|209914920|dbj|BAG79994.1| hypothetical phage protein [Escherichia coli SE11]
 gi|217321579|gb|EEC30003.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. TW14588]
 gi|218354654|emb|CAV01646.1| putative GTPase [Escherichia coli 55989]
 gi|218358985|emb|CAQ91645.1| putative GTPase [Escherichia fergusonii ATCC 35469]
 gi|218363494|emb|CAR01148.1| putative GTPase [Escherichia coli IAI1]
 gi|218372856|emb|CAR20736.1| putative GTPase [Escherichia coli IAI39]
 gi|218434881|emb|CAR15819.1| putative GTPase [Escherichia coli UMN026]
 gi|226840293|gb|EEH72295.1| GTP-binding protein HflX [Escherichia sp. 1_1_43]
 gi|242379695|emb|CAQ34519.1| GTPase associated with the 50S subunit of the ribosome [Escherichia
           coli BL21(DE3)]
 gi|253326246|gb|ACT30848.1| GTP-binding proten HflX [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253976003|gb|ACT41674.1| predicted GTPase [Escherichia coli B str. REL606]
 gi|253980159|gb|ACT45829.1| predicted GTPase [Escherichia coli BL21(DE3)]
 gi|254595592|gb|ACT74953.1| predicted GTPase [Escherichia coli O157:H7 str. TW14359]
 gi|257762150|dbj|BAI33647.1| predicted GTPase HflX [Escherichia coli O103:H2 str. 12009]
 gi|257767275|dbj|BAI38770.1| predicted GTPase HflX [Escherichia coli O111:H- str. 11128]
 gi|284924355|emb|CBG37471.1| GTP-binding protein [Escherichia coli 042]
 gi|290765458|gb|ADD59419.1| GTP-binding protein HflX [Escherichia coli O55:H7 str. CB9615]
 gi|291320937|gb|EFE60379.1| GTP-binding protein HflX [Escherichia coli B088]
 gi|291429715|gb|EFF02729.1| GTPase HflX [Escherichia coli FVEC1412]
 gi|291430394|gb|EFF03392.1| GTP-binding protein HflX [Escherichia coli B185]
 gi|291472151|gb|EFF14633.1| GTP-binding protein HflX [Escherichia coli B354]
 gi|298280664|gb|EFI22165.1| GTP-binding protein HflX [Escherichia coli FVEC1302]
 gi|299878905|gb|EFI87116.1| GTP-binding protein HflX [Escherichia coli MS 196-1]
 gi|300315463|gb|EFJ65247.1| GTP-binding protein HflX [Escherichia coli MS 175-1]
 gi|300356722|gb|EFJ72592.1| GTP-binding protein HflX [Escherichia coli MS 198-1]
 gi|300397016|gb|EFJ80554.1| GTP-binding protein HflX [Escherichia coli MS 69-1]
 gi|300402169|gb|EFJ85707.1| GTP-binding protein HflX [Escherichia coli MS 84-1]
 gi|300412226|gb|EFJ95536.1| GTP-binding protein HflX [Escherichia coli MS 115-1]
 gi|300421240|gb|EFK04551.1| GTP-binding protein HflX [Escherichia coli MS 182-1]
 gi|300451380|gb|EFK15000.1| GTP-binding protein HflX [Escherichia coli MS 116-1]
 gi|300454548|gb|EFK18041.1| GTP-binding protein HflX [Escherichia coli MS 21-1]
 gi|300462773|gb|EFK26266.1| GTP-binding protein HflX [Escherichia coli MS 187-1]
 gi|300526153|gb|EFK47222.1| GTP-binding protein HflX [Escherichia coli MS 119-7]
 gi|300530757|gb|EFK51819.1| GTP-binding protein HflX [Escherichia coli MS 107-1]
 gi|300842114|gb|EFK69874.1| GTP-binding protein HflX [Escherichia coli MS 124-1]
 gi|300847289|gb|EFK75049.1| GTP-binding protein HflX [Escherichia coli MS 78-1]
 gi|301075165|gb|EFK89971.1| GTP-binding protein HflX [Escherichia coli MS 146-1]
 gi|306905682|gb|EFN36211.1| GTP-binding proten HflX [Escherichia coli W]
 gi|308119397|gb|EFO56659.1| GTP-binding protein HflX [Escherichia coli MS 145-7]
 gi|309704678|emb|CBJ04028.1| GTP-binding protein [Escherichia coli ETEC H10407]
 gi|310331553|gb|EFP98809.1| GTP-binding proten HflX [Escherichia coli 1827-70]
 gi|312289089|gb|EFR16983.1| GTP-binding proten HflX [Escherichia coli 2362-75]
 gi|315063487|gb|ADT77814.1| predicted GTPase [Escherichia coli W]
 gi|315255517|gb|EFU35485.1| GTP-binding protein HflX [Escherichia coli MS 85-1]
 gi|320180686|gb|EFW55613.1| GTP-binding protein HflX [Shigella boydii ATCC 9905]
 gi|320190695|gb|EFW65345.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. EC1212]
 gi|320193553|gb|EFW68190.1| GTP-binding protein HflX [Escherichia coli WV_060327]
 gi|320200697|gb|EFW75283.1| GTP-binding protein HflX [Escherichia coli EC4100B]
 gi|320638931|gb|EFX08577.1| GTPase HflX [Escherichia coli O157:H7 str. G5101]
 gi|320644300|gb|EFX13365.1| GTPase HflX [Escherichia coli O157:H- str. 493-89]
 gi|320649618|gb|EFX18142.1| GTPase HflX [Escherichia coli O157:H- str. H 2687]
 gi|320655014|gb|EFX22975.1| GTPase HflX [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660521|gb|EFX27982.1| GTPase HflX [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665790|gb|EFX32827.1| GTPase HflX [Escherichia coli O157:H7 str. LSU-61]
 gi|323161962|gb|EFZ47834.1| GTP-binding proten HflX [Escherichia coli E128010]
 gi|323166655|gb|EFZ52413.1| GTP-binding proten HflX [Shigella sonnei 53G]
 gi|323171605|gb|EFZ57251.1| GTP-binding proten HflX [Escherichia coli LT-68]
 gi|323182279|gb|EFZ67689.1| GTP-binding proten HflX [Escherichia coli 1357]
 gi|323380434|gb|ADX52702.1| GTP-binding proten HflX [Escherichia coli KO11]
 gi|323935403|gb|EGB31747.1| GTP-binding protein HflX [Escherichia coli E1520]
 gi|323940092|gb|EGB36286.1| GTP-binding protein HflX [Escherichia coli E482]
 gi|323946021|gb|EGB42058.1| GTP-binding protein HflX [Escherichia coli H120]
 gi|323960322|gb|EGB55962.1| GTP-binding protein HflX [Escherichia coli H489]
 gi|323965559|gb|EGB61013.1| GTP-binding protein HflX [Escherichia coli M863]
 gi|323970572|gb|EGB65831.1| GTP-binding protein HflX [Escherichia coli TA007]
 gi|323975486|gb|EGB70587.1| GTP-binding protein HflX [Escherichia coli TW10509]
 gi|324005236|gb|EGB74455.1| GTP-binding protein HflX [Escherichia coli MS 57-2]
 gi|324019351|gb|EGB88570.1| GTP-binding protein HflX [Escherichia coli MS 117-3]
 gi|324112230|gb|EGC06208.1| GTP-binding protein HflX [Escherichia fergusonii B253]
 gi|324118738|gb|EGC12630.1| GTP-binding protein HflX [Escherichia coli E1167]
 gi|325499709|gb|EGC97568.1| putative GTPase HflX [Escherichia fergusonii ECD227]
 gi|326345495|gb|EGD69238.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. 1125]
 gi|326346648|gb|EGD70382.1| GTP-binding protein HflX [Escherichia coli O157:H7 str. 1044]
 gi|327250113|gb|EGE61832.1| GTP-binding proten HflX [Escherichia coli STEC_7v]
 gi|331035895|gb|EGI08133.1| GTP-binding protein HflX [Escherichia coli H736]
 gi|331046355|gb|EGI18445.1| GTP-binding protein HflX [Escherichia coli M718]
 gi|331056888|gb|EGI28882.1| GTP-binding protein HflX [Escherichia coli TA143]
 gi|331061667|gb|EGI33593.1| GTP-binding protein HflX [Escherichia coli TA271]
 gi|331071766|gb|EGI43102.1| GTP-binding protein HflX [Escherichia coli H591]
 gi|331081413|gb|EGI52574.1| GTP-binding protein HflX [Escherichia coli H299]
 gi|332083711|gb|EGI88929.1| GTP-binding proten HflX [Shigella dysenteriae 155-74]
 gi|332103309|gb|EGJ06655.1| GTP-binding protein HflX [Shigella sp. D9]
 gi|332346250|gb|AEE59584.1| GTP-binding protein HflX [Escherichia coli UMNK88]
 gi|333010321|gb|EGK29754.1| GTP-binding proten HflX [Shigella flexneri VA-6]
 gi|333011155|gb|EGK30569.1| GTP-binding proten HflX [Shigella flexneri K-272]
 gi|333012650|gb|EGK32030.1| GTP-binding proten HflX [Shigella flexneri K-227]
          Length = 426

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|317501865|ref|ZP_07960050.1| GTP-binding protein HflX [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088622|ref|ZP_08337533.1| GTP-binding protein HflX [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316896755|gb|EFV18841.1| GTP-binding protein HflX [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330407579|gb|EGG87079.1| GTP-binding protein HflX [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 413

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 107/282 (37%), Gaps = 31/282 (10%)

Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191
           A  +S E ++Q  L+        +S        L+ +   I       ++ ++     +E
Sbjct: 114 ARAVSGEGKIQVELAQLRYR---ASRLAGLGRSLSRLGGGIGTRGPGEKKLEMDRRLIRE 170

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAK----KDVAI 246
            ++ +     D+  H    +  +  ++G K+  ++G+++AGKSS+ N L      +D  +
Sbjct: 171 RISRLKKELKDVEKHRELIRT-QRKQSGLKVAALVGYTSAGKSSIENVLTNAGILEDAML 229

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
            + +  TTR ++          + ++DT G          E  K T  E + AD+I+ + 
Sbjct: 230 FSTLDTTTRSLVL----DNTQEILVTDTVGFIRKLPHHLVEAFKSTLEEAKYADIIIHVV 285

Query: 307 EINSKKEISF------------PKNIDFIFIGTKSDL------YSTYTEEYDHLISSFTG 348
           + ++ +                  +   I +  K D       Y  +  EY    S+ TG
Sbjct: 286 DASNPQMDEQMHVVYDTLRQLGAADRPVITLFNKQDKLESAGSYRDFQAEYSIPASAKTG 345

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
           EGL EL   +  I+  +   +       +     L ++   L
Sbjct: 346 EGLAELKKALLEIVRREQIYVERLYDFSEASKIQLIRSRGQL 387


>gi|323176069|gb|EFZ61661.1| GTP-binding proten HflX [Escherichia coli 1180]
          Length = 426

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|161505135|ref|YP_001572247.1| putative GTPase HflX [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866482|gb|ABX23105.1| hypothetical protein SARI_03269 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 426

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLEKVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNQIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLMVMNKIDMLDNFEPRIDRDEENKPIRVWLSAQTGVGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQRTLRLPPQEGRLRSRFYQLQAIE 390


>gi|307706044|ref|ZP_07642865.1| GTP-binding proten HflX [Streptococcus mitis SK564]
 gi|307620402|gb|EFN99517.1| GTP-binding proten HflX [Streptococcus mitis SK564]
          Length = 412

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 101/266 (37%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNTLTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------- 309
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + +       
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 310 SKKEISFPKNIDFIFI-----GTKSDLYSTYTE-----EYDHLISSFTGEGLEEL-INKI 358
            K  +S  K++D   I       K+DL   +T            S  + E L+ L + KI
Sbjct: 296 EKTVLSIIKDLDMEDIPRLTLYNKADLVKDFTPTQTPYALISAKSEDSRENLQALFLEKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I  +   ++PFS       L  ++
Sbjct: 356 KDIFESFTLRVPFSKSYKIHDLESVA 381


>gi|295427793|ref|ZP_06820425.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|295128151|gb|EFG57785.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           EMRSA16]
          Length = 415

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 101/265 (38%), Gaps = 25/265 (9%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 124 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 182

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 183 NEIKLQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFA- 241

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 242 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 301

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEEL-- 354
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L  
Sbjct: 302 YRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVK 361

Query: 355 ---INKIKSILSNKFKKLPFSIPSH 376
              I++IK  L+   + +  +    
Sbjct: 362 TLFIDEIKRQLTYYDEAIATNNADR 386


>gi|57640649|ref|YP_183127.1| iron(II) transport protein B [Thermococcus kodakarensis KOD1]
 gi|57158973|dbj|BAD84903.1| iron(II) transport protein B [Thermococcus kodakarensis KOD1]
          Length = 672

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 19/168 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G+ NAGK++LFNAL       V + PG T +    + + +    ++ D  G+    
Sbjct: 6   IALIGNPNAGKTTLFNALTGL-RQHVGNWPGVTVEKKEGEFEYKEMKFRVVDLPGVYGLT 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTY 335
                E I R F+  E   +++ + + ++ +              + +    K DL    
Sbjct: 65  AYSIDEKIARDFIVKEKPRVVVDIVDASNLERNLYLTLQLLEIGANVVVALNKMDLAEEK 124

Query: 336 TEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             + D              + +  G+G+EEL  KI   +  K + + +
Sbjct: 125 GYKIDPKKLEEALGVPVVPMVASEGKGIEELKAKIVEAIKGKPRPIEY 172


>gi|291286359|ref|YP_003503175.1| GTP-binding proten HflX [Denitrovibrio acetiphilus DSM 12809]
 gi|290883519|gb|ADD67219.1| GTP-binding proten HflX [Denitrovibrio acetiphilus DSM 12809]
          Length = 597

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 109/317 (34%), Gaps = 37/317 (11%)

Query: 121 GKIDLLEAESLADL--------------ISSE----TEMQRRLSMEGMSGELSSLYGQWI 162
             +   +A+++AD               I ++     + + R+ +  +   L     Q  
Sbjct: 272 NPLSPAQAKAIADFTDLKILDRPQLILDIFAKRATTNDGKIRVELAQLK-YLLPRLSQRD 330

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
           D L+ +   I      + + ++    + + +  +      I  +    +          +
Sbjct: 331 DSLSRLTGGIGGRGPGNTKLEIDRRRTNDRIAMLSRKLKKIEKNRETMRRKRNRNELPIV 390

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            I+G++NAGKS+L N+L +  V    D+   T D  +  +       V I+DT G     
Sbjct: 391 SIIGYTNAGKSTLLNSLTQSGV-YADDLMFATLDTSSKRIRFPQERDVIITDTVGFIRDL 449

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFIGTK 328
               K   K T  E+++AD++L + +I+S              +E+          +  K
Sbjct: 450 PENLKGAFKSTLEELQDADVLLHVVDISSDGFDSHVHSVETILQELELTDKESI-LVLNK 508

Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           +DL   +  +Y            E       I +++    K    S    K     L   
Sbjct: 509 TDLLLQHETDYIQFGEMPDDADPEMFTRAHRIVNLIERYNKVCMVSALHRKSFRELLELI 568

Query: 387 VRYLEMASLNEKDCGLD 403
              L    ++ +  G++
Sbjct: 569 RLTLFADGIDIEPMGIE 585


>gi|261414758|ref|YP_003248441.1| GTP-binding protein Obg/CgtA [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371214|gb|ACX73959.1| GTP-binding protein Obg/CgtA [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 333

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 23/168 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKSSL N ++      V D P TT + +   + + G+   ++D  G+ E  
Sbjct: 160 VGLVGFPNAGKSSLVNKIS-SGRPKVGDYPFTTLEPVLGIVQVNGHSFVVADIPGLLEGA 218

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISF----PKNIDFIFIGT 327
              +  G  +    +E    +L + +  +          K+E+          +F+    
Sbjct: 219 SEGKGLG-HQFLKHIERTHTLLFVIDGFAENAYEQFKVLKEELKAFHPKLAEKNFVVALN 277

Query: 328 KSDL-YSTYTEEYDHLI------SSFTGEGLEELINKIKSILSNKFKK 368
           KSDL      +E+          S+ TGEG  EL   + + + +  KK
Sbjct: 278 KSDLGIENAIKEFKKHRQKVVITSAVTGEGCAELQQALDAAVPHMHKK 325


>gi|170755107|ref|YP_001782715.1| GTP-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169120319|gb|ACA44155.1| GTP-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 594

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 31/222 (13%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALA------ 240
             + +   +  LK ++       +     RN   K+ ++G++NAGKS+L N L       
Sbjct: 329 DKRHIRERVYDLKKELYKIKKVRETQRSKRNDIPKVSLVGYTNAGKSTLRNKLCDTGIAS 388

Query: 241 --KKDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGIRETDDIVEKEGIKRTFLEVE 297
              K+     D+   T D+ T  + L    +  ++DT G          E  K T  EV 
Sbjct: 389 AQNKEKVFEADMLFATLDITTRAISLPNNEIITLTDTVGFVRKLPHELVEAFKSTLEEVI 448

Query: 298 NADLILLLKEINS---KKEISFPK---------NIDFIFIGTKSD---------LYSTYT 336
            +DL+L + +I+S   +K+I             N   I +  K D             + 
Sbjct: 449 YSDLLLHVIDISSDTAEKQIDAVNNVLEELGTENKPIILVFNKIDKVSMERLNYFRDKFK 508

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +E    IS+  G  LE+L+  I+  L  K  +  + IP  K+
Sbjct: 509 DEKVIEISARLGINLEDLLKLIEETLPYKLSEAEYIIPYDKQ 550


>gi|323945945|gb|EGB41985.1| hypothetical protein EREG_02489 [Escherichia coli H120]
          Length = 290

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 103/247 (41%), Gaps = 27/247 (10%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMIITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELINKIKSILSNKFKK 368
           + I    +   +F+ T++D  +    E+D      S    + + E  + +  +       
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREKTDAVFRLFRPVHPV 195

Query: 369 LPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
           +  S  +       +S  +  L    AS        ++  E++R  +    + TG V   
Sbjct: 196 VAVSACTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQARE--QFTGAV--- 250

Query: 427 QLLDIIF 433
              D IF
Sbjct: 251 ---DRIF 254


>gi|167627766|ref|YP_001678266.1| protease, GTP-binding subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597767|gb|ABZ87765.1| protease, GTP-binding subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 435

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 89/267 (33%), Gaps = 27/267 (10%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E + ++ +  ++ + + L   W                   + ++     ++ +
Sbjct: 116 LRAKTHEGKLQVELAQLNYQSTRLVKGWTHLERQKGGIGVRGGPGETQLEIDRRLIRQRI 175

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I      +  H    +      N   I  +G++NAGKS+LFN +   DV     +  T
Sbjct: 176 KQITQKLEKVKHHRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFAT 235

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
               L   +  +   V  SDT G  +       E    T  E   +DL++ + +   +  
Sbjct: 236 LDPTLRKVIVPKLGEVIFSDTVGFIKNLPHDLVEAFHATLEEAIESDLLVHVIDYADEDY 295

Query: 312 -----------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------------SSFTG 348
                      KEI          +  K D        +  +             S+ TG
Sbjct: 296 KSYIGQVEKVLKEIGIADKEMIC-VYNKIDKIENAYAGFVPMDDSDSSVVGRVYLSAQTG 354

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           +G+EE  + + +  +  +      +P 
Sbjct: 355 DGIEEFYHALATFFNKTWVSETLELPP 381


>gi|226939621|ref|YP_002794694.1| HflX [Laribacter hongkongensis HLHK9]
 gi|226714547|gb|ACO73685.1| HflX [Laribacter hongkongensis HLHK9]
          Length = 284

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 74/191 (38%), Gaps = 25/191 (13%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           N +  LK  ++    Q  +    R     + + I+G++NAGKS+LFNAL K   A   D 
Sbjct: 88  NRVRLLKERLAKLERQRHVQRRSRERGGVFSVSIVGYTNAGKSTLFNALTKA-RAYAADQ 146

Query: 251 PGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-I 308
              T D  +  L L   L V +SDT G          E  K T  E   ADL+L + +  
Sbjct: 147 LFATLDTTSRRLYLNEQLSVVLSDTVGFIRDLPHSLVEAFKATLEETVRADLLLHVVDCA 206

Query: 309 NSKKEISFPK-----------NIDFIFIGTKSDLY--------STYTEEYDHLISSFTGE 349
           +  +E    +            ID + I  K DL                   +S+  GE
Sbjct: 207 SDTRETQLAEVNKVLKEIEADGIDQLIIWNKCDLKGLSPAIERDETGRIVAVRLSALKGE 266

Query: 350 GLEELINKIKS 360
           GL+ L   +  
Sbjct: 267 GLDLLRQALVE 277


>gi|119897224|ref|YP_932437.1| GTP-binding subunit of protease specific for phage lambda [Azoarcus
           sp. BH72]
 gi|119669637|emb|CAL93550.1| probable GTP-binding subunit of protease specific for phage lambda
           [Azoarcus sp. BH72]
          Length = 379

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 71/187 (37%), Gaps = 21/187 (11%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
              I       +      +   + ++G++NAGKS+LFNAL K   A   D    T D  +
Sbjct: 178 LAQIEKQRRVRRRARERNDALTVSLVGYTNAGKSTLFNALTKAG-AYAADQLFATLDTTS 236

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319
             L + G  V +SDT G             + T  E  +AD++L + +  S+   +  + 
Sbjct: 237 RRLFVGGGNVVLSDTVGFIRDLPHALVAAFEATLEETAHADVLLHVVDAASEDRDAQIEA 296

Query: 320 IDF------------IFIGTKSDL--YSTYTEEYDHLI------SSFTGEGLEELINKIK 359
           ++             I +  K DL   +   E  D         S+ TGEGLE L   + 
Sbjct: 297 VNRVLEEIGAAEVPQILVWNKIDLTHAAPAVERGDCDRIRRVFLSARTGEGLELLREALA 356

Query: 360 SILSNKF 366
            +     
Sbjct: 357 ELACRDA 363


>gi|67921830|ref|ZP_00515347.1| Small GTP-binding protein domain [Crocosphaera watsonii WH 8501]
 gi|67856422|gb|EAM51664.1| Small GTP-binding protein domain [Crocosphaera watsonii WH 8501]
          Length = 447

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 15/180 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +++    L     +K D+ +   +  L +I  N  KI   G  + GKS++ NAL  +++ 
Sbjct: 28  HWNYPPNLELQAAVKQDLQAL--KASLEKIENNVIKIATFGLVSRGKSAVINALIGQNIL 85

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVK--ISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               I G T+   ++        VK    DT G+ E  D  E+E + R     + ADLIL
Sbjct: 86  ESGPIHGVTKWPQSVCWTPPNGEVKVEFIDTPGLDEI-DGREREIMSRNI--ADEADLIL 142

Query: 304 LLKEINSKKE-----ISFPKN-IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            +   +  +      +   K     I +  K DLY     E  +        GL   I++
Sbjct: 143 FVISEDITRSEYEALLDLKKALKPIILVFNKIDLYPDKDIETIYKQ--LHKIGLSSNIDQ 200


>gi|260910112|ref|ZP_05916789.1| GTP-binding protein HflX [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635616|gb|EEX53629.1| GTP-binding protein HflX [Prevotella sp. oral taxon 472 str. F0295]
          Length = 414

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 84/196 (42%), Gaps = 17/196 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L+ +  LK  + + I + K  +    G   ++ ++G++N GKS++ N LAK +
Sbjct: 181 EMDRRIILSRMALLKERL-AEIDKQKTTQRKNRGRMVRVALVGYTNVGKSTIMNLLAKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + +E     ++DT G          +  K T  EV  ADL++
Sbjct: 240 V-FAENKLFATLDTTVRKVVVENLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLV 298

Query: 304 LLKEINS---KKEISFPK---------NIDFIFIGTKSDLYSTY-TEEYDHLISSFTGEG 350
            + +I+    +++I+  +         +   + +  K D Y+    +E D   ++     
Sbjct: 299 HVVDISHPDFEEQIAVVEKTLTELDCADKPSMIVFNKIDNYTFVKKDEDDLTPATKENLT 358

Query: 351 LEELINKIKSILSNKF 366
           L+EL     + L++  
Sbjct: 359 LDELKRTWMARLNDNC 374


>gi|117626520|ref|YP_859843.1| putative GTPase HflX [Escherichia coli APEC O1]
 gi|115515644|gb|ABJ03719.1| HflX protein, GTP-binding subunit of protease specific for phage
           lambda cII repressor [Escherichia coli APEC O1]
          Length = 403

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 91  RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 149

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 150 QIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT-EARVYAADQLFAT 208

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 209 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 268

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 269 QENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIP 328

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 329 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 367


>gi|282860167|ref|ZP_06269242.1| GTP-binding protein HflX [Prevotella bivia JCVIHMP010]
 gi|282587056|gb|EFB92286.1| GTP-binding protein HflX [Prevotella bivia JCVIHMP010]
          Length = 416

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 15/195 (7%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q       R    ++ ++G++N GKS+  N LAK +V
Sbjct: 181 EMDRRIILNRMSLLKERLAEIDKQKSTQRKNRGRMIRVALVGYTNVGKSTTMNLLAKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + ++     ++DT G          +  K T  EV  ADL+L 
Sbjct: 241 -FAENKLFATLDTTVRKVVVDNLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLLH 299

Query: 305 LKEINS---KKEISFPK---------NIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGL 351
           + +I+    +++I             +   + I  K D Y+    +E D    +     L
Sbjct: 300 VVDISHPDFEEQIEVVNKTLADLGCADKPSMLIFNKIDNYTWVEKDEDDLTPPTKENITL 359

Query: 352 EELINKIKSILSNKF 366
           +EL     +      
Sbjct: 360 DELKRTWMAKADGNC 374


>gi|152978660|ref|YP_001344289.1| small GTP-binding protein [Actinobacillus succinogenes 130Z]
 gi|150840383|gb|ABR74354.1| small GTP-binding protein [Actinobacillus succinogenes 130Z]
          Length = 439

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 117/383 (30%), Gaps = 57/383 (14%)

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA---------------FENGK 122
           ED AEF +    A    IL+ +        A       +A                 N +
Sbjct: 34  EDLAEFQLLAQSA-QADILQTVTANRCAPQAKYFVGQGKAEEIAELAKQLNADVILVNHQ 92

Query: 123 IDLLEAESLADLISSETEMQRRLSM-------EGMSGELSSLYGQWIDK----------L 165
           +   +  +L  L       +  L +           G+L     Q              L
Sbjct: 93  LTPAQTRNLESLCGCRVVDRTGLILDIFAQRARSHEGKLQVELAQLKHLSTRLVRRKTGL 152

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
              +  +        + +      K  +  +      +S   +Q +      +   + ++
Sbjct: 153 DQQKGAVGLRGPGETQLETDRRLIKVRIAQLQNRLEKVSRQRNQNRQTRQKADIPTVSLV 212

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           G++NAGKS+LFN L + DV     +  T    L      +     ++DT G         
Sbjct: 213 GYTNAGKSTLFNRLTQADVYAADQLFATLDPTLRRLSVQDVGTAILADTVGFIRDLPHDL 272

Query: 286 KEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIGTKSDLYS 333
               K T  E   A L+L + +            +N+        N+  + +  K D  +
Sbjct: 273 VSAFKSTLQETTEASLLLHVIDAADMRKQENIAAVNAVLNEIQADNVPTLLVYNKIDRLN 332

Query: 334 TYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK---RHLY 381
                 +           IS+    G++ L + I+  L N+   L  S+   +   RH +
Sbjct: 333 GVRPHIEFNDEQQPIAVYISAQANVGIDLLFDAIRQRLRNEILSLTVSLKPDQGKIRHAF 392

Query: 382 HLSQTVRYLEMASLNEKDCGLDI 404
           +    +R        E    L+I
Sbjct: 393 YQLDCIRRENTGEQGEYLLKLEI 415


>gi|33338590|gb|AAQ13917.1| HflX [Pasteurella multocida]
          Length = 448

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 95/250 (38%), Gaps = 26/250 (10%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           K  ++ +      +     Q +      +   I ++G++NAGKS+LFN + + +V    D
Sbjct: 190 KVRISQLQSRLAKVEKQRHQNRQTRQKADIPTISLVGYTNAGKSTLFNLITQANV-YAAD 248

Query: 250 IPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D     L ++      ++DT G             K T  E   A L+L + + 
Sbjct: 249 QLFATLDPTLRRLQIQDVGTTILADTVGFIRHLPHDLVSAFKSTLQETTEAALLLHVIDC 308

Query: 309 NSKKEIS------------FPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFT 347
              +++                +I  + +  K D  +      ++          +S+ T
Sbjct: 309 ADPRKLENIHAVEAVLKEINAGDIPTLLVYNKIDQVAHIEPHIEYDQEQRPIAVYMSAQT 368

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G GL  L++ I   L N+   L  ++P H   + H       ++   +NE+     ++A 
Sbjct: 369 GIGLPLLLDAISLCLKNEILDLALTLPVHTGKIRHALYQQDCIQHEQINEQGEF--LLAI 426

Query: 408 NL-RLASVSL 416
            + ++A + L
Sbjct: 427 RIDKVAWLKL 436


>gi|161830086|ref|YP_001596717.1| GTP-binding proten HflX [Coxiella burnetii RSA 331]
 gi|215919083|ref|NP_820006.2| GTP-binding proten HflX [Coxiella burnetii RSA 493]
 gi|161761953|gb|ABX77595.1| GTP-binding proten HflX [Coxiella burnetii RSA 331]
 gi|206583968|gb|AAO90520.2| GTP-binding protein [Coxiella burnetii RSA 493]
          Length = 454

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 23/178 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           + ++G++NAGKS+LFNA+ + +V    D    T D     L+L     + + DT G    
Sbjct: 206 VSLVGYTNAGKSTLFNAITEANV-YTADQLFATLDPTFRQLELPTLGKIILVDTVGFIRD 264

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTK 328
                    + T  E   ADL+L + + +S              E    + +  +FI  K
Sbjct: 265 LPHDLIAAFRATLEESRQADLLLHVVDAHSPDSSVMLEEVQKVLETIGAEEVPQLFIYNK 324

Query: 329 SDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            DL  +     D+          +S+ TG G++ L   I  +L +       ++ +++
Sbjct: 325 IDLLESRKPRIDYDEKGKPRRVWLSALTGVGIDLLNPAIVELLGDTILTCEVTLEANE 382


>gi|293192306|ref|ZP_06609417.1| GTP-binding protein [Actinomyces odontolyticus F0309]
 gi|292820221|gb|EFF79215.1| GTP-binding protein [Actinomyces odontolyticus F0309]
          Length = 526

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 73/217 (33%), Gaps = 26/217 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G++NAGKS+L N L    V +   +  T    +      +G    ++D  G     
Sbjct: 297 VAIAGYTNAGKSTLLNRLTDAGVLVQDALFATLDPTVRRARAADGREYTLTDAVGFVRNL 356

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-------------ISFPKNIDFIFIGTK 328
                E  + T  EV  AD+I+ + +                   I     I  +    K
Sbjct: 357 PTQLVEAFRSTLEEVGQADIIVHVVDAAHPDPVSQVQAVRSVIDTIEGASEIPELIALNK 416

Query: 329 SDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS------ 375
           +DL S                +S+ TG G+E L   ++ +L      +   +P       
Sbjct: 417 ADLASPEQIALLRTVFPNAVPLSAHTGWGVEALRAALEDMLPRPRVAVDAILPYSAGSLV 476

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412
           H+ H     +   Y+E  +         + A   R A
Sbjct: 477 HRIHEEGDVEREEYVETGTRIVARVDEALAAVIAREA 513


>gi|207110172|ref|ZP_03244334.1| GTP-binding protein EngA [Helicobacter pylori HPKX_438_CA4C1]
          Length = 126

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227
           I + I+A LD      +              +   + +  +  +         ++ I+G 
Sbjct: 9   ISALIDAILDTLNLNQIIEQDLD------ADILESLEASNNASEEETKEEEIIQVGIIGR 62

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
            N GKSSL NAL KK+ ++V+ + GTT D +   + +    +   DTAGIR    I
Sbjct: 63  VNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRGKI 118


>gi|315039082|ref|YP_004032650.1| GTP-binding protein [Lactobacillus amylovorus GRL 1112]
 gi|312277215|gb|ADQ59855.1| GTP-binding protein [Lactobacillus amylovorus GRL 1112]
          Length = 424

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 99/250 (39%), Gaps = 32/250 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
             + + +   I  +K ++ +  SQ ++    RN     K+ ++G++NAGKS+  N L K+
Sbjct: 162 EMNRRTIGKQISAIKKELKAVASQEEIKSARRNQSRIPKVALVGYTNAGKSTTMNGLLKE 221

Query: 243 -------DVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFL 294
                      V ++   T D     +DL+  +   +SDT G          E  K T  
Sbjct: 222 FSKEGSDKEVFVKNMLFATLDTSVRRIDLKDNFSFILSDTVGFISKLPHNLVESFKATLQ 281

Query: 295 EVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTY---TEEY 339
           E ++ADL++ + + +    +               K I  I    K+D         E  
Sbjct: 282 ETKDADLLINVVDASDPNMVQMIRTTQNVLDEIGVKGIPMITAYNKADKTDRNYPQIEGS 341

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYL-----EMA 393
           D L S+   + ++ L + I   + + ++KL  ++P    + L +L +  + L     E  
Sbjct: 342 DILYSAIDPKSIKMLADLITKRVFSNYEKLNLNLPLSAGKELAYLHENAQVLSENYEEDG 401

Query: 394 SLNEKDCGLD 403
              E +   D
Sbjct: 402 VHIEANIAPD 411


>gi|302325968|gb|ADL25169.1| GTP-binding protein Obg/CgtA [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 333

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 23/168 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKSSL N ++      V D P TT + +   + + G+   ++D  G+ E  
Sbjct: 160 VGLVGFPNAGKSSLVNKIS-SGRPKVGDYPFTTLEPVLGIVQVNGHSFVVADIPGLLEGA 218

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISF----PKNIDFIFIGT 327
              +  G  +    +E    +L + +  +          K+E+          +F+    
Sbjct: 219 SEGKGLG-HQFLKHIERTHTLLFVIDGFAENAYEQFKVLKEELKAFHPKLAEKNFVVALN 277

Query: 328 KSDL-YSTYTEEYDHLI------SSFTGEGLEELINKIKSILSNKFKK 368
           KSDL      +E+          S+ TGEG  EL   + + + +  KK
Sbjct: 278 KSDLGIENAIKEFKKHRQKVVITSAVTGEGCAELQQALDAAVPHMHKK 325


>gi|299141395|ref|ZP_07034532.1| GTP-binding protein HflX [Prevotella oris C735]
 gi|298577355|gb|EFI49224.1| GTP-binding protein HflX [Prevotella oris C735]
          Length = 415

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 17/196 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  I  LK  +   I + K+ +    G   ++ ++G++N GKS++ N LAK +
Sbjct: 181 EMDRRIILQRITLLKQRLVE-IDKQKVTQRKNRGRMIRVALVGYTNVGKSTIMNLLAKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     ++DT G          +  K T  EV  AD++L
Sbjct: 240 V-FAENKLFATLDTTVRKVVVDNLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADVLL 298

Query: 304 LLKEINS---KKEISFPK---------NIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEG 350
            + +I+    +++I   +         +   + I  K D Y     +E D    +     
Sbjct: 299 HVVDISHPDFEEQIQVVEKTLADLGCSDKPSMIIFNKIDNYHWVEKDEDDLTPETRENIT 358

Query: 351 LEELINKIKSILSNKF 366
           LEEL     + L++  
Sbjct: 359 LEELKKTWMARLNDNC 374


>gi|307154101|ref|YP_003889485.1| small GTP-binding protein [Cyanothece sp. PCC 7822]
 gi|306984329|gb|ADN16210.1| small GTP-binding protein [Cyanothece sp. PCC 7822]
          Length = 453

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 77/201 (38%), Gaps = 19/201 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +++    L+    ++ D+ +   +  L ++ +N  KI   G  + GKS++ NAL  + V 
Sbjct: 32  HWNYPPNLDLQAAVRKDLQTL--KAALEKLEQNVIKIATFGLVSRGKSAVVNALLGEKVL 89

Query: 246 IVTDIPGTTRDVLTIDLD--LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               + G T+   ++          +++ DT G+ E +     +           ADLIL
Sbjct: 90  QTGPLHGVTQWPRSVRWTPASGKVQIELIDTPGLDEIEGEARAQM---AREVAYQADLIL 146

Query: 304 LLK--EINSKKEISF----PKNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLE 352
            +   +I   +  +           + +  K DLY     +  +       +   GE L 
Sbjct: 147 FVVASDITRTEYQALCELRESQKPILIVFNKIDLYPEKDRQEIYQQLQTWATGKAGENLS 206

Query: 353 ELINKIKSILSNKFKKLPFSI 373
           E+++    I+    +  P  +
Sbjct: 207 EVLST-DEIVMVAAEPQPVPV 226


>gi|254292140|ref|ZP_04962912.1| GTP-binding protein HflX [Vibrio cholerae AM-19226]
 gi|150421939|gb|EDN13914.1| GTP-binding protein HflX [Vibrio cholerae AM-19226]
          Length = 429

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 118/344 (34%), Gaps = 53/344 (15%)

Query: 70  PSPESFTGE----DSAE-FHVHGGIAVV-NGIL-----EELAKMPNLRLANPGEFSRRAF 118
           P P+ F GE    + AE   +HG   V+ N  L       L ++   R+ +        F
Sbjct: 52  PHPKYFVGEGKAQEIAEAVQMHGANVVIFNHALSPAQERNLERLCQCRVIDRTGLILDIF 111

Query: 119 ENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177
                             + T E + ++ +  +    + L   W   L   +  I     
Sbjct: 112 AQ---------------RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGP 155

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237
              + +      +E +  IL     ++    QG+          I ++G++NAGKS+LFN
Sbjct: 156 GETQLETDRRLLRERIKAILRRLEKVAKQREQGRRARSRAEIPTISLVGYTNAGKSTLFN 215

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEV 296
            + +  V    D    T D     +DL       ++DT G             K T  E 
Sbjct: 216 RITEAGV-YAADQLFATLDPTLRKIDLVDVGSAVLADTVGFIRHLPHDLVAAFKATLQET 274

Query: 297 ENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYD--- 340
           + AD++L + + + +             +EI     +  + +  K D     +   +   
Sbjct: 275 QEADILLHVVDASDERFRENIQAVETVLQEID-AHEVPTLLVMNKIDNLEEQSPRIERDD 333

Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                   IS+  G G+E L   +   L+++  +    IP   +
Sbjct: 334 EGVPRVVWISAMQGAGIELLFEALSERLASQVVEHHLRIPPRHQ 377


>gi|237704001|ref|ZP_04534482.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|226901913|gb|EEH88172.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|281181410|dbj|BAI57740.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|323955418|gb|EGB51186.1| hypothetical protein ERLG_03326 [Escherichia coli H263]
          Length = 290

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 101/248 (40%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMIITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K  ++        P 
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREKTDAVFRLFRPVHPV 195

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDV 425
              S       L   V  L  A  +     L      ++  E++R  +    + TG V  
Sbjct: 196 VAVSACTGWE-LDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|118618687|ref|YP_907019.1| GTP-binding protein HflX [Mycobacterium ulcerans Agy99]
 gi|118570797|gb|ABL05548.1| GTP-binding protein HflX [Mycobacterium ulcerans Agy99]
          Length = 444

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 96/306 (31%), Gaps = 53/306 (17%)

Query: 140 EMQRRLSMEGMSGELSSLYGQW-----IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           E + ++++  M   +      W                         E       + +  
Sbjct: 109 EGKAQVALAQME-YMLPRLRGWGESMSRQAGGRAGGSGGGVGLRGPGETKIETDRRRIRE 167

Query: 195 DILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIV 247
            +  L+ +I +       +    + +    I I+G++NAGKSSL NAL    V    A+ 
Sbjct: 168 RMAKLRREIKAMKQARDTQRSRRLHSDVPSIAIVGYTNAGKSSLLNALTGAGVLVQDALF 227

Query: 248 TDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +  TTR     D D  G      +DT G          E  + T  EV +ADL+L + 
Sbjct: 228 ATLDPTTR-RAEFDPDSNGARPFLFTDTVGFVRHLPPQLVEAFRSTLEEVIDADLLLHVV 286

Query: 307 EINSKKEISFPKNIDFI-------------------------------FIGTKSDLYSTY 335
           + +    ++    +  +                                +  K D     
Sbjct: 287 DGSDPNPLAQINAVRQVISEVIADEATGGGEASDGRAGSAGAEVPQELLVVNKVDAAGDL 346

Query: 336 T-EEYDH------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
              E  H       +S+ TG+G++ L  K+  + +     +   IP  +  L        
Sbjct: 347 ALAELRHALPGALFVSAHTGDGIDVLWRKLAELAAPTDTAVDVVIPYDRGDLVARMHADG 406

Query: 389 YLEMAS 394
            ++ A 
Sbjct: 407 RVQQAE 412


>gi|307823640|ref|ZP_07653869.1| GTP-binding protein Era [Methylobacter tundripaludum SV96]
 gi|307735625|gb|EFO06473.1| GTP-binding protein Era [Methylobacter tundripaludum SV96]
          Length = 293

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 74/189 (39%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKS+L N L K+ ++I +  P TTR  +      +       DT G+  ++
Sbjct: 6   VALIGRPNVGKSTLMNHLLKQKISITSRKPQTTRHRILGINTTDAGQAIYMDTPGMHNSE 65

Query: 282 DIVEKEGIKRT-FLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
                  + RT    +   D+I+ L +    +   E+ F K     +  I    K D  +
Sbjct: 66  KRALNRYLNRTAETTLLGVDVIVWLIDGLSWHEYDEVIFKKLEQAGLPVILAVNKVDKVA 125

Query: 334 --------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                          +  ++   IS+     L++L + I ++L  +    P    + +  
Sbjct: 126 DKEAILTFFNDAQHRFPFKHLVPISALKRTNLDQLEDLIMALLPERDLIYPEDQVTDRSE 185

Query: 380 LYHLSQTVR 388
            +  ++ VR
Sbjct: 186 RFLAAEIVR 194


>gi|225858500|ref|YP_002740010.1| GTP-binding proten HflX [Streptococcus pneumoniae 70585]
 gi|225720764|gb|ACO16618.1| GTP-binding proten HflX [Streptococcus pneumoniae 70585]
          Length = 412

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 101/266 (37%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNILTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------- 309
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + +       
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 310 SKKEISFPKNIDFIFI-----GTKSDLYSTYTE-EYDHLISSFTGEGLEE-----LINKI 358
            K  +S  K++D   I       K+DL   +   +  + + S   E   E     L++KI
Sbjct: 296 EKTVLSIMKDLDMEDIPHLTLYNKADLVEDFMPTQTPYTLISAKSEDSRENLQALLLDKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 356 KEIFEAFTLRVPFSKSYKIHDLESVA 381


>gi|304321234|ref|YP_003854877.1| GTP-binding protein Era [Parvularcula bermudensis HTCC2503]
 gi|303300136|gb|ADM09735.1| GTP-binding protein Era [Parvularcula bermudensis HTCC2503]
          Length = 324

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G  + +LG  NAGKS+  N +    V+IVT    TTR  +      E   +   DT G
Sbjct: 9   RAGI-VTVLGAPNAGKSTFVNQMVGAKVSIVTHKVQTTRTRIRGIAMAERTQMVFVDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           I      +++  +   +   + AD+ LLL +  +
Sbjct: 68  IFVPRRTLDRAMVAAAWEGTDGADVTLLLVDAPA 101


>gi|110640205|ref|YP_680415.1| GTP1/OBG family GTP-binding protein [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282886|gb|ABG61072.1| GTP-binding protein HflX [Cytophaga hutchinsonii ATCC 33406]
          Length = 392

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 16/159 (10%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAI 246
             + + + I  LK  ++    Q +     R+G  ++ ++G++N GKS+L   L+K DV  
Sbjct: 173 DRRIIRDQISLLKTRLAKINKQSETQRKSRDGIVRVALVGYTNVGKSTLMQRLSKSDV-F 231

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + L      ++DT G          E  K T  EV  AD++L + 
Sbjct: 232 AENKLFATVDSTVRKVVLNEIPFLLTDTVGFIRKLPHGLIESFKSTLDEVREADILLHVI 291

Query: 307 EI-------------NSKKEISFPKNIDFIFIGTKSDLY 332
           ++             ++  EI    +   + +  K D+Y
Sbjct: 292 DLPHPSYEEHMQVVQSTLAEIK-ANDKIVVLVFNKVDVY 329


>gi|332083170|gb|EGI88401.1| GTP-binding proten HflX [Shigella boydii 5216-82]
          Length = 426

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 97/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS++  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSDEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|241668330|ref|ZP_04755908.1| protease, GTP-binding subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876863|ref|ZP_05249573.1| protease, GTP-binding subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842884|gb|EET21298.1| protease, GTP-binding subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 435

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 89/267 (33%), Gaps = 27/267 (10%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E + ++ +  ++ + + L   W                   + ++     ++ +
Sbjct: 116 LRAKTHEGKLQVELAQLNYQSTRLVKGWTHLERQKGGIGVRGGPGETQLEIDRRLIRQRI 175

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I      +  H    +      N   I  +G++NAGKS+LFN +   DV     +  T
Sbjct: 176 KQITQKLEKVKHHRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFAT 235

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
               L   +  +   V  SDT G  +       E    T  E   +DL++ + +   +  
Sbjct: 236 LDPTLRKVIVPKLGEVIFSDTVGFIKNLPHDLVEAFHATLEEAIESDLLVHVIDYADEDY 295

Query: 312 -----------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------------SSFTG 348
                      KEI          +  K D        +  +             S+ TG
Sbjct: 296 KSYIEQVEKVLKEIGIADKEMIC-VYNKIDKIENAYAGFVPMDDSDSSVVGRVYLSAQTG 354

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPS 375
           +G+EE  + + +  +  +      +P 
Sbjct: 355 DGIEEFYHALATFFNKTWVSETLELPP 381


>gi|269121346|ref|YP_003309523.1| GTP-binding proten HflX [Sebaldella termitidis ATCC 33386]
 gi|268615224|gb|ACZ09592.1| GTP-binding proten HflX [Sebaldella termitidis ATCC 33386]
          Length = 419

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 86/217 (39%), Gaps = 25/217 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV---ILGHSNAGKSSLFNALA-- 240
             + + + + I  L  ++ + I +  +    R   +I    ++G++NAGKS++ N     
Sbjct: 159 EINYRTIKHRIQLLNKELENVIKERDIQRKQRKKNQISVVSLVGYTNAGKSTIMNKFVNK 218

Query: 241 ---KKDVAIVT-DIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLE 295
               +   +   D+   T +    ++ L       ++DT G          +  + T  E
Sbjct: 219 FNKGESKEVFEKDMLFATLETSVRNITLPDRKKFLLTDTVGFVSNLPHHLIKAFRSTLEE 278

Query: 296 VENADLILLLKE------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD--- 340
           V  ADL++ + +             +S       K+I  I++  K+DL        D   
Sbjct: 279 VREADLLIHVVDYSSIHYKNMMQTTDSTLAEVGVKDIPVIYVYNKADLTEKEIPADDGDS 338

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
             IS+    GL+ L+ KI   +   ++K  F IP +K
Sbjct: 339 IYISAKNDIGLDLLLEKIYDKIFQDYEKAVFLIPYNK 375


>gi|49186555|ref|YP_029807.1| GTP-binding protein [Bacillus anthracis str. Sterne]
 gi|227813393|ref|YP_002813402.1| GTP-binding protein HflX [Bacillus anthracis str. CDC 684]
 gi|49180482|gb|AAT55858.1| GTP-binding protein [Bacillus anthracis str. Sterne]
 gi|227007179|gb|ACP16922.1| GTP-binding protein HflX [Bacillus anthracis str. CDC 684]
          Length = 354

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 93/272 (34%), Gaps = 31/272 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 81  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 140

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 141 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 200

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 201 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 259

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 260 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHIPIITLYNKK 319

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
           D        +       T    E+ +  IK  
Sbjct: 320 DELHQNFIPFPKNDFLMTSAFEEKDLLHIKEA 351


>gi|257425359|ref|ZP_05601784.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428020|ref|ZP_05604418.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430653|ref|ZP_05607035.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433413|ref|ZP_05609771.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436255|ref|ZP_05612302.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus M876]
 gi|282903860|ref|ZP_06311748.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus C160]
 gi|282905623|ref|ZP_06313478.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908599|ref|ZP_06316429.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910877|ref|ZP_06318680.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914082|ref|ZP_06321869.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus M899]
 gi|282919004|ref|ZP_06326739.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus C427]
 gi|282924127|ref|ZP_06331803.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus C101]
 gi|283958048|ref|ZP_06375499.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501114|ref|ZP_06666965.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510076|ref|ZP_06668784.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus M809]
 gi|293526662|ref|ZP_06671347.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           M1015]
 gi|297591250|ref|ZP_06949888.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus MN8]
 gi|257271816|gb|EEV03954.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274861|gb|EEV06348.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278781|gb|EEV09400.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281506|gb|EEV11643.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284537|gb|EEV14657.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus M876]
 gi|282314099|gb|EFB44491.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus C101]
 gi|282316814|gb|EFB47188.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus C427]
 gi|282322150|gb|EFB52474.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus M899]
 gi|282325482|gb|EFB55791.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327661|gb|EFB57944.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330915|gb|EFB60429.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595478|gb|EFC00442.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus C160]
 gi|283790197|gb|EFC29014.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920734|gb|EFD97797.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096119|gb|EFE26380.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467020|gb|EFF09538.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus M809]
 gi|297576136|gb|EFH94852.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus MN8]
 gi|312438311|gb|ADQ77382.1| GTP-binding protein HflX [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315194192|gb|EFU24585.1| hypothetical protein CGSSa00_05813 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 412

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 101/265 (38%), Gaps = 25/265 (9%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 180 NEIKLQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 298

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEEL-- 354
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L  
Sbjct: 299 YRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVK 358

Query: 355 ---INKIKSILSNKFKKLPFSIPSH 376
              I++IK  L+   + +  +    
Sbjct: 359 TLFIDEIKRQLTYYDEAIATNNADR 383


>gi|110808091|ref|YP_691611.1| putative GTPase HflX [Shigella flexneri 5 str. 8401]
 gi|110617639|gb|ABF06306.1| GTP-binding protein hflX [Shigella flexneri 5 str. 8401]
          Length = 403

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 91  RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 149

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 150 QIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT-EARVYAADQLFAT 208

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 209 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 268

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 269 QENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIP 328

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 329 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 367


>gi|331654127|ref|ZP_08355127.1| conserved hypothetical protein [Escherichia coli M718]
 gi|331047509|gb|EGI19586.1| conserved hypothetical protein [Escherichia coli M718]
          Length = 150

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 5/137 (3%)

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+    +    + E +   L  L   +S HI +  L ++  +   I I+G S AGKSSL 
Sbjct: 8   FTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLC 66

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLE 295
           NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ D   E E + R  L 
Sbjct: 67  NALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRNILS 126

Query: 296 VENADLILLLKEINSKK 312
               DL+L L + + + 
Sbjct: 127 --ELDLVLWLIKADDRA 141


>gi|121533669|ref|ZP_01665496.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1]
 gi|121307660|gb|EAX48575.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1]
          Length = 597

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 86/233 (36%), Gaps = 21/233 (9%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224
           L+ +   I        + +V     +E + DI      I  H S  +      +   + +
Sbjct: 322 LSRLGGGIGTRGPGETKLEVDKRRIRERIADIEAEIEQIKKHRSLHRERRQRAHVPTLAL 381

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDI 283
           +G++NAGKS+L N L    V +  D    T D  T  L L  G    ++DT G  +    
Sbjct: 382 VGYTNAGKSTLLNTLTNASV-LAEDKLFATLDPTTRRLKLPNGQEALLTDTVGFIQKLPH 440

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTKSD- 330
                 + T  EV  ADL+L + + +  +                    D I +  K D 
Sbjct: 441 QLIAAFRATLEEVVYADLLLHIVDASHPRYEEQMDSVFEVLRELQADTKDIITVFNKIDK 500

Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
                 +     E     IS+ TG G++ L+ ++++ L      +   IP  +
Sbjct: 501 IENPNIIARLVRESGSVAISALTGLGIDSLLEQVQNKLRIITTDVCLVIPYSE 553


>gi|21674557|ref|NP_662622.1| ferrous iron transport protein B [Chlorobium tepidum TLS]
 gi|21647753|gb|AAM72964.1| ferrous iron transport protein B [Chlorobium tepidum TLS]
          Length = 791

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 80/227 (35%), Gaps = 27/227 (11%)

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +    K  +S+ +    L  I      + ++G+ N GK+++FNAL   +   V + PG T
Sbjct: 2   ETAAQKQRVSAKVPTSPLKRI------VAVVGNPNCGKTTIFNALTGLNQ-RVGNWPGVT 54

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE- 313
            D  +     +G   ++ D  GI     + + E + R+++    A L++ + + ++    
Sbjct: 55  VDKKSGRFRHDGQEYELVDLPGIYSLSSLSQDEEVARSYILSGEAGLVVNIVDASNPDRN 114

Query: 314 -----ISFPKNIDFIFIGTKSDLYSTYTEEYD------------HLISSFTGEGLEELIN 356
                      +  +      D         D              + +  GEG+EEL  
Sbjct: 115 LYLTSRLLEMGVPVVVALNMVDAAEEQGISVDPARLSSLLGCPVIPMVASRGEGIEELKA 174

Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
            I    +     +P +       L    +  R  E      ++ G D
Sbjct: 175 AIAKGFTTGGASVPSAKVRFPAELDAAIR--RVAESTGTQARELGYD 219


>gi|14590256|ref|NP_142322.1| hypothetical protein PH0344 [Pyrococcus horikoshii OT3]
 gi|3256735|dbj|BAA29418.1| 186aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 186

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 70/177 (39%), Gaps = 38/177 (21%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT---IDLDLEGY--------- 267
            K+ I+G  N GKS+L NAL     + V++ PGTT+ ++      + L            
Sbjct: 2   IKVAIIGAENVGKSTLMNALLGGKFSEVSETPGTTKGIIKRAFGKIKLPKTMKNPFGGAD 61

Query: 268 LVKISDTAGIRETDDIV-----EKEGIKRTFLEVENADLILLLKEINSKKE--------- 313
            + + DTAG+ + +  +      +E  K    E+ NAD+I+ + +               
Sbjct: 62  ELVLIDTAGLFDPEKEIRGKVLSEEKFKELIKEIVNADVIIHMIDATKGLHRGMEKLHYM 121

Query: 314 ISFPKNIDFIFIGTKSDLYS------------TYTEEYDHLISSFTGEGLEELINKI 358
           + F      I +  K DL S               E+   L+S  T EG  EL+  +
Sbjct: 122 LKFRYEKPIIVVINKIDLVSREELERLRELVKKRLEQEPILLSLVTYEGFNELLKAL 178


>gi|224476442|ref|YP_002634048.1| GTP-binding protein HflX [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421049|emb|CAL27863.1| similar to GTP-binding protein HflX [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 420

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 94/251 (37%), Gaps = 16/251 (6%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +  + +S  E + ++ +  +   L          L+ +   I        + +      +
Sbjct: 118 IFAMRASSKEGKLQVELAQLD-YLMPRLQGHGKSLSRLGGGIGTRGPGETKLETDRRHIR 176

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             +N+I         H  + +        +++ ++G++NAGKS+ FN LA +      D+
Sbjct: 177 RRMNEIKHQLKATVEHRERYRSKRRQNQVFQVALVGYTNAGKSTWFNILADES-TYEKDL 235

Query: 251 PGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D  T  + + +G+ + ISDT G  +          K T  E  +ADL+L + + +
Sbjct: 236 LFATLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEARDADLLLHVVDAS 295

Query: 310 SKK------------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
           ++                    I    I  K D++              + +  E+   +
Sbjct: 296 NEDYRTQFDTVNRIIGDLDMDKIPQAVIFNKKDMHEGPAPASQLPNVFVSAKNEED-RER 354

Query: 358 IKSILSNKFKK 368
           ++++L  + +K
Sbjct: 355 VRALLIEQVEK 365


>gi|261880653|ref|ZP_06007080.1| GTP-binding protein HflX [Prevotella bergensis DSM 17361]
 gi|270332606|gb|EFA43392.1| GTP-binding protein HflX [Prevotella bergensis DSM 17361]
          Length = 411

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 17/196 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  I  LK  +   I + K  +    G   ++ ++G++N GKS++ N L+K D
Sbjct: 177 EMDRRIILQRITLLKQRLVD-IDKQKATQRKNRGRLIRVALVGYTNVGKSTIMNLLSKSD 235

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + +      ++DT G          +  K T  EV  ADL+L
Sbjct: 236 V-FAENKLFATLDTTVRKVVIGNLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLL 294

Query: 304 LLKEINS---KKEISFPK---------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEG 350
            + +I+    +++IS            +   I +  K+D Y    +E  D    +     
Sbjct: 295 HVVDISHPDFEEQISVVNETLKDLGCSDKPQIVVFNKTDNYQWVEKEPDDLTPETKENLS 354

Query: 351 LEELINKIKSILSNKF 366
           L++L     + L    
Sbjct: 355 LDDLQKTWMAKLDENC 370


>gi|254735742|ref|ZP_05193448.1| GTP-binding protein HflX [Bacillus anthracis str. Western North
           America USA6153]
 gi|254751128|ref|ZP_05203167.1| GTP-binding protein HflX [Bacillus anthracis str. Vollum]
 gi|254759445|ref|ZP_05211470.1| GTP-binding protein HflX [Bacillus anthracis str. Australia 94]
 gi|270000540|ref|NP_846088.2| GTP-binding protein [Bacillus anthracis str. Ames]
 gi|269850252|gb|AAP27574.2| GTP-binding protein [Bacillus anthracis str. Ames]
          Length = 353

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 93/272 (34%), Gaps = 31/272 (11%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +L+ ++ +      Q  L   +       G+L     Q            
Sbjct: 80  NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQG 139

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I        + +      +  +++I      +  H  + +        +++
Sbjct: 140 LSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQV 199

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+LFN L + D     ++   T D  T  + L  GY V ++DT G  +  
Sbjct: 200 SLIGYTNAGKSTLFNRLTEAD-TFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDL 258

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  E   AD+IL + +      +   K            +I  I +  K 
Sbjct: 259 PTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHIPIITLYNKK 318

Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
           D        +       T    E+ +  IK  
Sbjct: 319 DELHQNFIPFPKNDFLMTSAFEEKDLLHIKEA 350


>gi|282908792|ref|ZP_06316610.1| GTP-binding protein [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282327056|gb|EFB57351.1| GTP-binding protein [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 59

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + I+G  N GKS++FN +  + V+IV D PG TRD +    +   +   I DT
Sbjct: 6   VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDT 58


>gi|333006081|gb|EGK25595.1| hypothetical protein SFVA6_1522 [Shigella flexneri VA-6]
          Length = 290

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHWGHQRVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-----D-IIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L     D +  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDGLRTESVRGQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|281423549|ref|ZP_06254462.1| GTP-binding protein HflX [Prevotella oris F0302]
 gi|281402369|gb|EFB33200.1| GTP-binding protein HflX [Prevotella oris F0302]
          Length = 415

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 17/196 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  I  LK  +   I + K+ +    G   ++ ++G++N GKS++ N LAK +
Sbjct: 181 EMDRRIILQRITLLKQRLVE-IDKQKITQRKNRGRMIRVALVGYTNVGKSTIMNLLAKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     ++DT G          +  K T  EV  AD++L
Sbjct: 240 V-FAENKLFATLDTTVRKVVVDNLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADVLL 298

Query: 304 LLKEINS---KKEISFPK---------NIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEG 350
            + +I+    +++I   +         +   + I  K D Y     +E D    +     
Sbjct: 299 HVVDISHPDFEEQIQVVEKTLADLGCSDKPSMIIFNKIDNYHWVEKDEDDLTPETRENIT 358

Query: 351 LEELINKIKSILSNKF 366
           LEEL     + L++  
Sbjct: 359 LEELKKTWMARLNDNC 374


>gi|124021970|ref|YP_001016277.1| GTP-binding protein, transport associated [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962256|gb|ABM77012.1| putative GTP-binding protein, transport associated [Prochlorococcus
           marinus str. MIT 9303]
          Length = 558

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 85/252 (33%), Gaps = 34/252 (13%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI 207
              +G L     Q   ++  +     +          +     ++  D   +   I   +
Sbjct: 295 SSAAGRLQVELAQLRYRMPRLMGRGRSLSRQGGGIGTRGPGETQLEKDRRAITRRIEHLL 354

Query: 208 SQGKL----GEIIRNG----YKIVILGHSNAGKSSLFNALAKKD---VAIVTDIPGTTRD 256
            + +        +RN      ++ ++G++NAGKSSL NAL  ++     +  +    T D
Sbjct: 355 REVRQLQNHRARLRNRREGLPRVALVGYTNAGKSSLLNALCSRNEHSKVLAENKLFATLD 414

Query: 257 VLTIDLDL---EGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
             T    +    G    + I+DT G          E  + T  E   ADL+L++ +++  
Sbjct: 415 PTTRRFLIPQTGGKPLELLITDTVGFIRELPAPLVEAFRATLEETLEADLLLVVVDLSDT 474

Query: 312 KEISFPKNID-----------FIFIGTKSDLYSTYTEEYD-------HLISSFTGEGLEE 353
              +    +               I  + D   T   E           +S+ +G GL+ 
Sbjct: 475 DWQAQLDTVHQLLNSLGAESIRQVIANQIDRCDTSALEEIRSIDPKVIYLSAASGAGLQG 534

Query: 354 LINKIKSILSNK 365
           L + +K      
Sbjct: 535 LKHWLKDQFWGH 546


>gi|163733861|ref|ZP_02141303.1| GTP-binding protein Era [Roseobacter litoralis Och 149]
 gi|161392972|gb|EDQ17299.1| GTP-binding protein Era [Roseobacter litoralis Och 149]
          Length = 302

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 75/205 (36%), Gaps = 24/205 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGESQIVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           + E    +++  +   +    +AD+++LL E +           +      +        
Sbjct: 63  LFEPRRRLDRAMVAAAWSGAADADVVVLLIEAHRGVTEGVERILEGLADVGQGRVVALAI 122

Query: 327 TKSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         L     E YD     +IS+  G G++ L   +  ++       P   
Sbjct: 123 NKIDRVQAEVLLALSKNLNERYDFAETFMISAERGHGVDALRGWLAGMVPEGPWLYPEDQ 182

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            +        ++  R      L+++
Sbjct: 183 IADLPMRTIAAEMTREKLTLRLHQE 207


>gi|283834791|ref|ZP_06354532.1| GTP-binding protein HflX [Citrobacter youngae ATCC 29220]
 gi|291069037|gb|EFE07146.1| GTP-binding protein HflX [Citrobacter youngae ATCC 29220]
          Length = 426

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 95/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIL 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+      +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLEKVEKQREQGRQSRKKADVPTVSLVGYTNAGKSTLFNQIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADFRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +++  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIEAVDTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWVSAQTGIGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|57640892|ref|YP_183370.1| iron(II) transport protein B [Thermococcus kodakarensis KOD1]
 gi|57159216|dbj|BAD85146.1| iron(II) transport protein B [Thermococcus kodakarensis KOD1]
          Length = 660

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 35/227 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G+ N GK+++FN+L       V + PG T +      + +G    + D  G     
Sbjct: 6   VALAGNPNVGKTTVFNSLTG-MRQHVGNWPGVTVEKKEGVFEYKGEKFLVVDLPGTYSLT 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYST 334
                E + R FL   N D+++ + +  S         EI      + +    K DL   
Sbjct: 65  AHSIDELVARNFLLNGNPDVVVNVVDATSLLRNLLLTMEIFEMGLKNVVIALNKIDLAEK 124

Query: 335 YTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI---PSHKRH 379
                D              +S+  G G+EEL  KI  + +   K  P      P  +R 
Sbjct: 125 KGIRIDPIKMSKALGVPVVAMSAKEGIGVEELKEKIYEMANGMVKTNPVVPRYDPEVERE 184

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENL--------RLASVSLGK 418
           + H+   ++     +  EK   L  +A  L        +L    +G+
Sbjct: 185 IEHIIGCLK----GTELEKRYPLRWLAIKLLQRDDEVMKLVLRHIGE 227


>gi|320528116|ref|ZP_08029281.1| GTP-binding protein HflX [Solobacterium moorei F0204]
 gi|320131464|gb|EFW24029.1| GTP-binding protein HflX [Solobacterium moorei F0204]
          Length = 413

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 89/252 (35%), Gaps = 37/252 (14%)

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALA-----KKD 243
               I  LK ++     +    E  R      ++ ++G++NAGKSSL NA+         
Sbjct: 163 YQKKISDLKEELRKIEVRRYQDERRRQKTLLKRVALVGYTNAGKSSLMNAILSMQDAGGQ 222

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
             +  D+   T D     +  +     + DT G          E  K T     +ADL++
Sbjct: 223 EVLEQDMLFATLDTSVRMVQSKHKKFLLYDTVGFVSDLPHGLIEAFKSTLDAARDADLLV 282

Query: 304 LLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
            + +                 KEI    +I  I +  K D  +         IS +T EG
Sbjct: 283 HVIDAADPSWQEKSAITQETLKEI-HAADIPQIHVFNKIDKLAHPERVDGLSISCYTKEG 341

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           L+ L+ +I  ++    + +   +   K  ++   + +  +++   ++             
Sbjct: 342 LDTLLEEIIEMIYPAEESIVCKLGYDKISMFDTYKAILDMDILEYHQNGL---------- 391

Query: 411 LASVSLGKITGC 422
                + +ITG 
Sbjct: 392 -----IARITGE 398


>gi|312601109|gb|ADQ90364.1| GTP-binding protein [Mycoplasma hyopneumoniae 168]
          Length = 293

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKSSL N+L +  V+IV+    TTRD +    + +   +   DT G     
Sbjct: 9   VAIVGLPNVGKSSLINSLVEFPVSIVSLKSQTTRDAINAIYNKDNLQILFVDTPGFHMRI 68

Query: 282 D---IVEKEGIKRTFLEVENADLILLLKEINSKKEI-------SFPKNIDFIFIGTKSDL 331
           +         I  T   +   DL+L L  ++   +           +N++ I + TK+DL
Sbjct: 69  NNLSNSLNYAINSTLEGI---DLVLFLHPVDKPVDQNTKFLAKKIARNMNKIVLITKTDL 125


>gi|255292518|dbj|BAH89633.1| GTP-binding protein EngA [uncultured bacterium]
          Length = 192

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 17/159 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I +LG  N GKS+LFN L +   A+V D PG TRD L     L      + DT G+   D
Sbjct: 5   IALLGRPNVGKSTLFNRLTRTRDALVADFPGVTRDRLVGSGQLGDRPFWVVDTGGLLGED 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333
             +  +   +     + AD +LL+ +  +          E              K++  +
Sbjct: 65  SQLSGKVSDQALAAAQEADAVLLVVDARAGPTADDRTIAETLRTLGRPVRVAVNKAEHLN 124

Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363
                 +           IS+  G G+ +L++ +     
Sbjct: 125 PELVRAEFFELGLGEPTPISASHGHGVRDLLDTVLDAFP 163


>gi|49483469|ref|YP_040693.1| hypothetical protein SAR1281 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49241598|emb|CAG40284.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 412

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 101/265 (38%), Gaps = 25/265 (9%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 180 NEIKLQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 298

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEEL-- 354
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L  
Sbjct: 299 YRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVK 358

Query: 355 ---INKIKSILSNKFKKLPFSIPSH 376
              I++IK  L+   + +  +    
Sbjct: 359 TLFIDEIKRQLTYYDEAIATNNADR 383


>gi|33863893|ref|NP_895453.1| putative GTP-binding protein, transport associated [Prochlorococcus
           marinus str. MIT 9313]
 gi|33635476|emb|CAE21801.1| putative GTP-binding protein, transport associated [Prochlorococcus
           marinus str. MIT 9313]
          Length = 558

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 34/252 (13%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI 207
              +G L     Q   ++  +     +          +     ++  D   +   I   +
Sbjct: 295 SSAAGRLQVELAQLRYRMPRLMGRGRSLSRQGGGIGTRGPGETQLEKDRRAITRRIEHLL 354

Query: 208 SQGKL----GEIIRNG----YKIVILGHSNAGKSSLFNALAKK---DVAIVTDIPGTTRD 256
            + +        +RN      ++ ++G++NAGKSSL NAL  +   +  +  +    T D
Sbjct: 355 REVRQLQNHRARLRNRREGLPRVALVGYTNAGKSSLLNALCSRNEHNKVLAENKLFATLD 414

Query: 257 VLTIDLDL---EGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
             T  L +    G    + I+DT G          E  + T  E   ADL+L++ +++  
Sbjct: 415 PTTRRLLIPQTGGKPLELLITDTVGFIRELPAPLVEAFRATLEETLEADLLLVVVDLSDT 474

Query: 312 KEISFPKNID-----------FIFIGTKSDLYSTYTEEYD-------HLISSFTGEGLEE 353
              +    +               I  + D   +   E           +S+ +G GL+ 
Sbjct: 475 DWQAQLDTVHQLLNSLGSESIRQVIANQIDRCDSSALETIRSIDPKVIYLSAASGAGLQG 534

Query: 354 LINKIKSILSNK 365
           L + +K      
Sbjct: 535 LKHWLKDQFWGH 546


>gi|256819322|ref|YP_003140601.1| GTP-binding proten HflX [Capnocytophaga ochracea DSM 7271]
 gi|315224767|ref|ZP_07866589.1| GTP-binding protein HflX [Capnocytophaga ochracea F0287]
 gi|256580905|gb|ACU92040.1| GTP-binding proten HflX [Capnocytophaga ochracea DSM 7271]
 gi|314945260|gb|EFS97287.1| GTP-binding protein HflX [Capnocytophaga ochracea F0287]
          Length = 401

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 84/219 (38%), Gaps = 16/219 (7%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L     + I +    +    G   ++ ++G++N GKS+L N ++
Sbjct: 161 ETEIETDRRIVRDRIALLKKKLTAIDKQMATQRSNRGALVRVALIGYTNVGKSTLMNVIS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K +V    +    T D     + +E     +SDT G          E  K T  EV  AD
Sbjct: 221 KSEV-FAENKLFATLDTTVRKVVIENLPFLLSDTVGFIRKLPTQLIESFKSTLDEVREAD 279

Query: 301 LILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           L+L + +I+        +            +   I +  K D Y+      D L +  T 
Sbjct: 280 LLLHVVDISHPNFEEHIQSVNQILAEIHSADKPTIMVFNKIDAYTNEEIAEDDLATERTK 339

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
           +    L    ++ +    + + F    +K +L    + V
Sbjct: 340 KHF-TLEEWKQTWMQRMGRDVLFISALNKNNLEEFREVV 377


>gi|126728498|ref|ZP_01744314.1| GTP-binding protein Era [Sagittula stellata E-37]
 gi|126711463|gb|EBA10513.1| GTP-binding protein Era [Sagittula stellata E-37]
          Length = 302

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 24/172 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-IALIGEPNAGKSTLTNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQLIFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFIFIG 326
           + +    +++  +   +    +AD+++LL E +  K              P+        
Sbjct: 63  LFQPRRRLDRAMVAAAWGGAADADIVVLLVEAHRGKTPGVDRILEGLAELPRGRRVALAI 122

Query: 327 TKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            K D             L   +  E   +IS+  G G+++L   + + +   
Sbjct: 123 NKIDRVKAEELLALSQELNEIHAFEKTFMISAERGYGVDDLREWLAAEVPEG 174


>gi|315604445|ref|ZP_07879511.1| GTP-binding protein [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314151|gb|EFU62202.1| GTP-binding protein [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 515

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 20/181 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I G++NAGKS+L N L    V +   +  T    +      +G    ++DT G     
Sbjct: 286 VAIAGYTNAGKSTLLNRLTDAGVLVQDALFATLDPTVRRARAADGREYTLTDTVGFVRNL 345

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-------------ISFPKNIDFIFIGTK 328
                E  + T  EV  ADLI+ + +                   I   ++I  +    K
Sbjct: 346 PTQLVEAFRSTLEEVGQADLIVHVVDAAHPDPVSQVQAVRSVIDTIEGARDIPELIALNK 405

Query: 329 SDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           +DL S                +S+ TG G++ L   ++ +L      +   +P     L 
Sbjct: 406 ADLASPEQIALLRTVFPGAVALSARTGWGVDALRAAVEDMLPRPRVCVDAVLPYSAGSLV 465

Query: 382 H 382
           H
Sbjct: 466 H 466


>gi|218246630|ref|YP_002372001.1| small GTP-binding protein [Cyanothece sp. PCC 8801]
 gi|257059673|ref|YP_003137561.1| small GTP-binding protein [Cyanothece sp. PCC 8802]
 gi|218167108|gb|ACK65845.1| small GTP-binding protein [Cyanothece sp. PCC 8801]
 gi|256589839|gb|ACV00726.1| small GTP-binding protein [Cyanothece sp. PCC 8802]
          Length = 214

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G  N GKS LFN L       V++ PGTT ++      + G  V I DT G+    
Sbjct: 48  IALVGSPNVGKSLLFNLLTGG-YTTVSNYPGTTVEIAKSQGIIGGQKVTIIDTPGMYSLM 106

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308
            + E+E   R FL  E  DL++ + + 
Sbjct: 107 SMTEEEQFTRDFLLTEPIDLVIHVIDA 133


>gi|329961837|ref|ZP_08299851.1| GTP-binding protein HflX [Bacteroides fluxus YIT 12057]
 gi|328531277|gb|EGF58121.1| GTP-binding protein HflX [Bacteroides fluxus YIT 12057]
          Length = 420

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 20/200 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q       R    ++ ++G++N GKS+L N LAK +V
Sbjct: 183 EMDRRIILNRMSLLKERLAEIDKQKSTQRKNRGRMIRVALVGYTNVGKSTLMNLLAKSEV 242

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + +E     +SDT G          +  K T  EV  ADL+L 
Sbjct: 243 -FAENKLFATLDTTVRKVIIENLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLLH 301

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           + +I+    +++I                 I +  K D Y TY E+    ++  T E L 
Sbjct: 302 IVDISHPDFEEQIEVVNKTLADIGAAGKPMILVFNKIDAY-TYIEKAADDLTPRTKENL- 359

Query: 353 ELINKIKSILSNKFKKLPFS 372
                ++ ++     K+  +
Sbjct: 360 ----TLEELMKTWMAKMEDN 375


>gi|237747715|ref|ZP_04578195.1| HflX GTP-binding protein [Oxalobacter formigenes OXCC13]
 gi|229379077|gb|EEO29168.1| HflX GTP-binding protein [Oxalobacter formigenes OXCC13]
          Length = 379

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 90/238 (37%), Gaps = 29/238 (12%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +   ++ L   W    TH+             E       + +   +  L++ +   
Sbjct: 119 LAQLQHLMTRLVRGW----THLERQKGGIGLRGPGETQLETDRRLIGTRVRMLRSKLEKL 174

Query: 207 ISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
             Q +     RN    + + ++G++NAGKS+LFNA+ K     V D    T D  +  + 
Sbjct: 175 QRQRETQRRSRNRNHVFSVSLVGYTNAGKSTLFNAMTKAG-TYVADQLFATLDTTSRRIY 233

Query: 264 LEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISF--- 316
           +E    V ISDT G             + T  E  +ADL+L + +  +   K++I     
Sbjct: 234 IEETGNVVISDTVGFVRELPHQLVAAFRATLEETIHADLLLHVVDAANPMRKEQIEQVNL 293

Query: 317 ------PKNIDFIFIGTKSDLY--------STYTEEYDHLISSFTGEGLEELINKIKS 360
                  +N+  + +  K DL           Y       +S+ TG GL+ L + I  
Sbjct: 294 VLKEIGAENVPQLLVWNKIDLAGLEPGLERDEYGRISRVFVSAGTGAGLDLLRDAIAE 351


>gi|27364695|ref|NP_760223.1| GTPase HflX [Vibrio vulnificus CMCP6]
 gi|37681254|ref|NP_935863.1| putative GTPase HflX [Vibrio vulnificus YJ016]
 gi|320155088|ref|YP_004187467.1| GTP-binding protein HflX [Vibrio vulnificus MO6-24/O]
 gi|27360840|gb|AAO09750.1| GTP-binding proten HflX [Vibrio vulnificus CMCP6]
 gi|37200005|dbj|BAC95834.1| GTP-binding protein HflX [Vibrio vulnificus YJ016]
 gi|319930400|gb|ADV85264.1| GTP-binding protein HflX [Vibrio vulnificus MO6-24/O]
          Length = 429

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 105/304 (34%), Gaps = 34/304 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + +  
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRE 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   +     Q + G   RN      I ++G++NAGKS+LFN + +  V    D  
Sbjct: 170 RIKAILRRLEKVAKQREQGRRARNRAEIPTISLVGYTNAGKSTLFNRITEAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     ++L       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKIELADVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASD 288

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGE 349
           ++            E      I  + +  K D         +           +S+  G+
Sbjct: 289 ERFRENIQAVHVVLEEINAHEIPTLVVMNKIDNMEDQRPRIERDDEGVPQVVWLSAMDGQ 348

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           G++ L   +   L++   +    IP   +H      T   ++     E D   +++  ++
Sbjct: 349 GIDLLFEALTERLASSMVECQLRIPP--QHQGRFRSTFFQMKCIQQEEYDQDGNLL-IDI 405

Query: 410 RLAS 413
           R+  
Sbjct: 406 RMQQ 409


>gi|310815099|ref|YP_003963063.1| GTP-binding protein Era [Ketogulonicigenium vulgare Y25]
 gi|308753834|gb|ADO41763.1| GTP-binding protein Era [Ketogulonicigenium vulgare Y25]
          Length = 307

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 77/214 (35%), Gaps = 25/214 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   D
Sbjct: 6   ENTRAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAIEGDAQIVFVD 64

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKNI----DFI 323
           T G+      +++  +   +    +AD++L+L E        +K  I   ++        
Sbjct: 65  TPGLFRPRRRLDRAMVAAAWGGAGDADVVLMLIEAHRGLTDGAKAIIESLQDRVGKTPVA 124

Query: 324 FIGTKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
            +  K D               + +      +IS+  G G + L   + + +       P
Sbjct: 125 LVINKIDRVKAEELLALTEAANAAFPFVQTFMISAERGYGCDALKGWLATEMPASPWLYP 184

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
               +        ++  R      L+ ++   ++
Sbjct: 185 EDQIADLPMRMIAAEITREKLTLRLH-QELPYEL 217


>gi|187931478|ref|YP_001891462.1| protease, GTP-binding subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712387|gb|ACD30684.1| protease, GTP-binding subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 436

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 25/266 (9%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E + ++ +  ++ + + L   W                   + ++     ++ +
Sbjct: 117 LRAKTYEGKLQVELAQLNYQSTRLVKGWTHLERQKGGIGVRGGSGETQLEIDRRLIRQRI 176

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I      +  H    +      N   I  +G++NAGKS+LFN +   DV     +  T
Sbjct: 177 KQIAQKLEKVKHHRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFAT 236

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
               L   +  +   V  SDT G  +       E    T  E   +DL++ + +   +  
Sbjct: 237 LDPTLRKVIVPKLGEVIFSDTVGFIKNLPHNLVEAFHATLEEAIESDLLVHVIDYADEDH 296

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD------------HLISSFTGE 349
            S+ +            + + I +  K D        +               +S+  G+
Sbjct: 297 KSYIEQVEKVLSEIGIADKETICVYNKIDKLENIKPSFVPLEDSDSSVVSRVYLSAQNGD 356

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
           GL E    + +  +  +      +P 
Sbjct: 357 GLVEFYQALATFFNKTWINQTLYLPP 382


>gi|220934077|ref|YP_002512976.1| GTP-binding proten HflX [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995387|gb|ACL71989.1| GTP-binding proten HflX [Thioalkalivibrio sp. HL-EbGR7]
          Length = 417

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 80/238 (33%), Gaps = 24/238 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W   L   +  I        + +         +  IL     + + 
Sbjct: 111 LAQLRHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLAGRIKQILRRLEKVEAQ 169

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
             QG+          + ++G++NAGKS+LFN L    V    D    T D     +DL  
Sbjct: 170 REQGRQSRRRAEIPTVSLVGYTNAGKSTLFNRLTNAGV-YAADQLFATLDPTLRRVDLPD 228

Query: 267 YL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------E 313
              + ++DT G             K T  E   A L+L + +    +            E
Sbjct: 229 QQAIILADTVGFVRQLPHDLVAAFKATLTETREASLLLHVVDAADPRREDNIQQVNNVLE 288

Query: 314 ISFPKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
                 +  I +  K D         + + + E     +S+ TGEG+E L++ +    
Sbjct: 289 EIGAAEVPRILVYNKIDALPEVQPQLVEAAHGEPARVYLSARTGEGVELLMDWLAKRF 346


>gi|54113821|gb|AAV29544.1| NT02FT0764 [synthetic construct]
          Length = 435

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 25/266 (9%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E + ++ +  ++ + + L   W                   + ++     ++ +
Sbjct: 116 LRAKTYEGKLQVELAQLNYQSTRLVKGWTHLERQKGGIGVRGGPGETQLEIDRRLIRQRI 175

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I      +  H    +      N   I  +G++NAGKS+LFN +   DV     +  T
Sbjct: 176 KQIAQKLEKVKHHRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFAT 235

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
               L   +  +   V  SDT G  +       E    T  E   +DL++ + +   +  
Sbjct: 236 LDPTLRKVIVPKLGEVIFSDTVGFIKNLPHNLVEAFHATLEEAIESDLLVHVIDYADEDH 295

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD------------HLISSFTGE 349
            S+ +            + + I +  K D        +               +S+  G+
Sbjct: 296 KSYIEQVEKVLSEIGIADKETICVYNKIDKLENIKPSFVPLEDSDSSVVSRVYLSAQNGD 355

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
           GL E    + +  +  +      +P 
Sbjct: 356 GLVEFYQALATFFNKTWINQTLYLPP 381


>gi|56707756|ref|YP_169652.1| protease, GTP-binding subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670227|ref|YP_666784.1| protease, GTP-binding subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456826|ref|ZP_03665299.1| protease, GTP-binding subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370260|ref|ZP_04986265.1| protease [Francisella tularensis subsp. tularensis FSC033]
 gi|254874569|ref|ZP_05247279.1| protease [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604248|emb|CAG45264.1| protease, GTP-binding subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320560|emb|CAL08647.1| protease, GTP-binding subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568503|gb|EDN34157.1| protease [Francisella tularensis subsp. tularensis FSC033]
 gi|254840568|gb|EET19004.1| protease [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158927|gb|ADA78318.1| protease, GTP-binding subunit [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 435

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 25/266 (9%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E + ++ +  ++ + + L   W                   + ++     ++ +
Sbjct: 116 LRAKTYEGKLQVELAQLNYQSTRLVKGWTHLERQKGGIGVRGGPGETQLEIDRRLIRQRI 175

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I      +  H    +      N   I  +G++NAGKS+LFN +   DV     +  T
Sbjct: 176 KQIAQKLEKVKHHRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFAT 235

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
               L   +  +   V  SDT G  +       E    T  E   +DL++ + +   +  
Sbjct: 236 LDPTLRKVIVPKLGEVIFSDTVGFIKNLPHNLVEAFHATLEEAIESDLLVHVIDYADEDH 295

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD------------HLISSFTGE 349
            S+ +            + + I +  K D        +               +S+  G+
Sbjct: 296 KSYIEQVEKVLSEIGIADKETICVYNKIDKLENIKPSFVPLEDSDSSVVSRVYLSAQNGD 355

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
           GL E    + +  +  +      +P 
Sbjct: 356 GLVEFYQALATFFNKTWINQTLYLPP 381


>gi|255348744|ref|ZP_05380751.1| putative nucleotide-binding protein [Chlamydia trachomatis 70]
 gi|255503284|ref|ZP_05381674.1| putative nucleotide-binding protein [Chlamydia trachomatis 70s]
          Length = 447

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 95/265 (35%), Gaps = 23/265 (8%)

Query: 135 ISSETEMQRRLSM-EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           +++E  +Q  L+    +   L  ++G    + +          +  ++ ++     +E +
Sbjct: 141 LTAEAGLQVELAQARYLLPRLKRMWGHLSRQKSGGSGGGFVKGEGEKQIELDRRIVRERI 200

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           + +     ++     + +  +         ++G++N+GKS+L N L   D     +    
Sbjct: 201 HKLSRDLKNVERQREERRKAKKRNQIPTFALIGYTNSGKSTLLNLLTSAD-TYAENKLFA 259

Query: 254 TRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T    L  G  V ++DT G             K T       D++L + + +   
Sbjct: 260 TLDPKTRRCVLPCGQRVLLTDTVGFIRKLPHTLVAAFKSTLEAALQEDILLHVVDASHPL 319

Query: 313 EISFPKNIDFIF------------IGTKSDLYS--------TYTEEYDHLISSFTGEGLE 352
            +   +  + I             +  K D  +                 +S+ TGEG+ 
Sbjct: 320 ALEHVETTNAILQELGITQPQVITVLNKMDKVADGVTASRLRLMSPNPVCVSAKTGEGIR 379

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK 377
           EL+  ++ ++  ++ +    +P  +
Sbjct: 380 ELLRSMEDMVQEEYPQATLHLPYKE 404


>gi|126642553|ref|YP_001085537.1| GTP-binding protein Era [Acinetobacter baumannii ATCC 17978]
          Length = 287

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 67/191 (35%), Gaps = 23/191 (12%)

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFL 294
            N L  + ++I +  P TTR  +      E       DT G+ + +   + K   +    
Sbjct: 1   MNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKEVRAINKMMNRAAHS 60

Query: 295 EVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHLI---- 343
            + + +L+L + +        ++   K    ++  I +  K+D +    E    +     
Sbjct: 61  ALRDVNLVLFVIDAHKWTQNDDLVLEKLKNADMPVILVINKADTFGDKREILPLIQERAK 120

Query: 344 ----------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
                     S+  G  LE L   I+  L  +     F   + +   +  S+ +R   M 
Sbjct: 121 LMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITDRSERFLASEIIREKIMR 180

Query: 394 SLNEKDCGLDI 404
            L E +   D+
Sbjct: 181 QLGE-ELPYDL 190


>gi|313900005|ref|ZP_07833505.1| GTP-binding protein HflX [Clostridium sp. HGF2]
 gi|312955057|gb|EFR36725.1| GTP-binding protein HflX [Clostridium sp. HGF2]
          Length = 417

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 95/246 (38%), Gaps = 26/246 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + +   I  L+ ++    +Q       R       + ++G++NAGKS++ N L + 
Sbjct: 152 ELDRRRINARIQELQRELKKIEAQRFNQRRARQKSMLPLVSLVGYTNAGKSTIMNMLLEH 211

Query: 243 -------DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
                     +  D+   T D     +DL +G    +SDT G          E    T  
Sbjct: 212 SSPYEEDKKVLEKDMLFATLDTSIRHIDLPDGKSFLLSDTVGFVSNLPHDLVEAFHSTLE 271

Query: 295 EVENADLILLLKEINSKK-----EISF-------PKNIDFIFIGTKSDLYS---TYTEEY 339
           EV+ A L++ + +++S++     EI+          +I  I +  K D           +
Sbjct: 272 EVQYASLLVQVVDVSSEEYARQMEITQETLQQIKAADIPMITVYNKCDQSGYQYPQVHAH 331

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           D  +S+    GL+EL++ I S L    K +   IP  +  +Y L     ++      E  
Sbjct: 332 DLYMSAKEKAGLQELLDLIHSHLYPDEKHVELHIPYQQTGIYSLLMKHAHVISRRDEEDG 391

Query: 400 CGLDII 405
             LD +
Sbjct: 392 IHLDAV 397


>gi|239617115|ref|YP_002940437.1| ferrous iron transport protein B [Kosmotoga olearia TBF 19.5.1]
 gi|239505946|gb|ACR79433.1| ferrous iron transport protein B [Kosmotoga olearia TBF 19.5.1]
          Length = 662

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 26/195 (13%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              K+ + G+ N GK+++FN L       V + PG T +        +G    ++D  GI
Sbjct: 2   ENIKVALTGNPNVGKTAIFNGLTG-MRQHVGNWPGVTVEKKEGTYIHKGINFLVTDLPGI 60

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKE--------------INSKKEISFPKNIDFI 323
                +   E I R FL  EN D+++ + +              ++    +    N    
Sbjct: 61  YSLSAVSIDERIARNFLTEENPDVVVAIIDGMNLERNLYLVSELMDLGVNLIIAVNFMDE 120

Query: 324 FIGT--KSDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                 K D+   S           +  G G+++L ++I        +    S     R+
Sbjct: 121 VEKNDMKIDIQKLSEVFGVPVVGTVAIKGHGIQKLKDEI----FKASQSKSVSFI---RY 173

Query: 380 LYHLSQTVRYLEMAS 394
              L Q ++ +E  S
Sbjct: 174 SDELEQYIKQIEEIS 188


>gi|65321034|ref|ZP_00393993.1| COG2262: GTPases [Bacillus anthracis str. A2012]
          Length = 222

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 70/187 (37%), Gaps = 14/187 (7%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             +  +++I      +  H  + +        +++ ++G++NAGKS+LFN L + D    
Sbjct: 34  HIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQVSLIGYTNAGKSTLFNRLTEAD-TFE 92

Query: 248 TDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
            ++   T D  T  + L  GY V ++DT G  +          + T  E   AD+IL + 
Sbjct: 93  ENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDLPTSLIAAFRSTLEEAGEADVILHVV 152

Query: 307 EINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           +      +   K            +I  I +  K D        +       T    E+ 
Sbjct: 153 DSADPNYVGHEKTVKQLLSELEINHIPIITLYNKKDELHQNFIPFPKNDFLMTSAFEEKD 212

Query: 355 INKIKSI 361
           +  IK  
Sbjct: 213 LLHIKEA 219


>gi|254369245|ref|ZP_04985257.1| protease [Francisella tularensis subsp. holarctica FSC022]
 gi|157122195|gb|EDO66335.1| protease [Francisella tularensis subsp. holarctica FSC022]
          Length = 435

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 89/266 (33%), Gaps = 25/266 (9%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E + ++ +  ++ + + L   W                   + ++     ++ +
Sbjct: 116 LRAKTYEGKLQVELAQLNYQSTRLVKGWTHLERQKGGIGVRGGPGETQLEIDRRLIRQRI 175

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I      +  H    +      N   I  +G++NAGKS+LFN +   DV     +  T
Sbjct: 176 KQIAQKLEKVKHHRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFAT 235

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
               L   +  +   +  SDT G  +       E    T  E   +DL++ + +   +  
Sbjct: 236 LDPTLRKVIVPKLGEIIFSDTVGFIKNLPHNLVEAFHATLEEAIESDLLVHVIDYADEDH 295

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD------------HLISSFTGE 349
            S+ +            + + I +  K D        +               +S+  G+
Sbjct: 296 KSYIEQVEKVLSEIGIADKETICVYNKIDKLENIKPSFVPLEDSDSSVVSRVYLSAQNGD 355

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
           GL E    + +  +  +      +P 
Sbjct: 356 GLVEFYQALATFFNKTWINQTLDLPP 381


>gi|284162668|ref|YP_003401291.1| small GTP-binding protein [Archaeoglobus profundus DSM 5631]
 gi|284012665|gb|ADB58618.1| small GTP-binding protein [Archaeoglobus profundus DSM 5631]
          Length = 304

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 86/182 (47%), Gaps = 17/182 (9%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           E +++ L   N++   + +      + +   +V+ G+ N GKSS    ++     I +  
Sbjct: 128 EQIDEELRFLNELKKTLREIP---ALTDEPTVVVAGYPNVGKSSFVAKVSTVKPEIAS-Y 183

Query: 251 PGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN-ADLILLLKEI 308
           P TT+ +    ++LE G  ++I DT G+ +       E  ++  L +++ A+ IL + + 
Sbjct: 184 PFTTKSIHVGYIELERGKRIQIIDTPGLLDRPLEKRNEIERKAILCLKHVANCILFIIDP 243

Query: 309 NSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                      +EI    ++  I + +K+DL+           SS TGEG+E+++ +I+ 
Sbjct: 244 TMDLKPQMKLLEEIKENFDVPVIVVYSKADLHDKRDLPA---FSSVTGEGIEDVLKRIRE 300

Query: 361 IL 362
           +L
Sbjct: 301 VL 302


>gi|89256256|ref|YP_513618.1| protease, GTP-binding subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314713|ref|YP_763436.1| protease, GTP-binding subunit [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167011007|ref|ZP_02275938.1| GTP-binding protein HflX [Francisella tularensis subsp. holarctica
           FSC200]
 gi|290953596|ref|ZP_06558217.1| protease, GTP-binding subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313097|ref|ZP_06803787.1| protease, GTP-binding subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144087|emb|CAJ79338.1| protease, GTP-binding subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129612|gb|ABI82799.1| GTP-binding protein HflX [Francisella tularensis subsp. holarctica
           OSU18]
          Length = 435

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 89/266 (33%), Gaps = 25/266 (9%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E + ++ +  ++ + + L   W                   + ++     ++ +
Sbjct: 116 LRAKTYEGKLQVELAQLNYQSTRLVKGWTHLERQKGGIGVRGGPGETQLEIDRRLIRQRI 175

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I      +  H    +      N   I  +G++NAGKS+LFN +   DV     +  T
Sbjct: 176 KQIAQKLEKVKHHRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFAT 235

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
               L   +  +   +  SDT G  +       E    T  E   +DL++ + +   +  
Sbjct: 236 LDPTLRKVIVPKLGEIIFSDTVGFIKNLPHNLVEAFHATLEEAIESDLLVHVIDYADEDH 295

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD------------HLISSFTGE 349
            S+ +            + + I +  K D        +               +S+  G+
Sbjct: 296 KSYIEQVEKVLSEIGIADKETICVYNKIDKLENIKPSFVPLEDSDSSVVSRVYLSAQNGD 355

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
           GL E    + +  +  +      +P 
Sbjct: 356 GLVEFYQALATFFNKTWINQTLDLPP 381


>gi|86140868|ref|ZP_01059427.1| GTP-binding protein HflX [Leeuwenhoekiella blandensis MED217]
 gi|85832810|gb|EAQ51259.1| GTP-binding protein HflX [Leeuwenhoekiella blandensis MED217]
          Length = 406

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 84/221 (38%), Gaps = 18/221 (8%)

Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           +   E D +    +  L      K D    I +G  G ++R    + ++G++N GKS+L 
Sbjct: 161 ETEIETDRRIVRDRISLLKKKLEKIDKQQAIQRGNRGALVR----VALVGYTNVGKSTLM 216

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N ++K +V    +    T D     + +      +SDT G          E  K T  EV
Sbjct: 217 NTISKSEV-FAENKLFATLDTTVRKVVIRNLPFLLSDTVGFIRKLPTQLVESFKSTLDEV 275

Query: 297 ENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLIS 344
             ADL+L + +I+  +                  +   + +  K D Y+  T + D L++
Sbjct: 276 READLLLHVVDISHPQFEDHIASVNQIMDEIGGSDKPMLMVFNKIDQYTHKTIDEDDLVT 335

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             T E    L    ++ +S       F    +K ++    +
Sbjct: 336 ERTEEHF-TLEEWERTWMSRVDGDAIFISALNKDNMEAFRK 375


>gi|333005525|gb|EGK25043.1| hypothetical protein SFK218_1677 [Shigella flexneri K-218]
          Length = 290

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 29/248 (11%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           + I    +   +F+ T++D  +    E+D      +    + +  K    +   F+ +  
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHP 194

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-----D-IIAENLRLASVSLGKITGCVDV 425
            +    R  + L   V  L  A  +     L     D +  E++R  +    + TG V  
Sbjct: 195 VVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDGLRTESVRGQARE--QFTGAV-- 250

Query: 426 EQLLDIIF 433
               D IF
Sbjct: 251 ----DRIF 254


>gi|298694597|gb|ADI97819.1| GTP-binding protein [Staphylococcus aureus subsp. aureus ED133]
          Length = 412

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 101/265 (38%), Gaps = 25/265 (9%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSKEGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        +++ ++G++NAGKSS FN LA ++      +   
Sbjct: 180 NEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYANAGKSSWFNVLANEETYEKDQLFA- 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----- 307
           T D  T  + + +G+ + ISDT G  +          K T  E + ADL++ + +     
Sbjct: 239 TLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPE 298

Query: 308 -------INSKKEISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEEL-- 354
                  +N   +     +I  I I  K DL    +     +  ++  S   +G + L  
Sbjct: 299 YRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVK 358

Query: 355 ---INKIKSILSNKFKKLPFSIPSH 376
              I++IK  L+   + +  +    
Sbjct: 359 TLFIDEIKRQLTYYDEAIATNNADR 383


>gi|282881831|ref|ZP_06290484.1| GTP-binding protein HflX [Peptoniphilus lacrimalis 315-B]
 gi|281298323|gb|EFA90766.1| GTP-binding protein HflX [Peptoniphilus lacrimalis 315-B]
          Length = 422

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 93/257 (36%), Gaps = 31/257 (12%)

Query: 150 MSGELSSLYGQWIDKLTHIRS------FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203
             G+L     Q   +L  +                   E +     + +L +I  +K  +
Sbjct: 121 YEGKLQVELAQLEYQLPRLLGIKGWSRTGGGIGTRGPGEQIIETDRRRLLREIDKIKEKL 180

Query: 204 SSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDV--AIVTDIPGTTRDVL 258
           +            R   KI    ++G++NAGKS++ N + + D     V D+   T D  
Sbjct: 181 NKAKKTRDTTRSKRMNSKIPTVSLVGYTNAGKSTILNRIKEDDSKEVFVKDMLFATLDPN 240

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-EISF 316
           +    L  G    ISDT G          E  K T  E++ +DLI+ + + +SK  EI++
Sbjct: 241 SRKARLLSGREFIISDTVGFVSKLPTKLIEAFKSTLEEIKYSDLIVHVIDASSKDLEIAY 300

Query: 317 -----------PKNIDFIFIGTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKI 358
                       K+   + +  KSD     +       +     IS+     + +L+  I
Sbjct: 301 DTTMNILQEIGIKDKKILTVFNKSDKIDLNSTTIPLKIKSQKIYISAKNDPDMNKLLKAI 360

Query: 359 KSILSNKFKKLPFSIPS 375
           +  L  ++     + P 
Sbjct: 361 EENLPEEYIYTKLNFPY 377


>gi|194014979|ref|ZP_03053596.1| GTP-binding protein HflX [Bacillus pumilus ATCC 7061]
 gi|194014005|gb|EDW23570.1| GTP-binding protein HflX [Bacillus pumilus ATCC 7061]
          Length = 420

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 118/311 (37%), Gaps = 43/311 (13%)

Query: 141 MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
            Q + ++  +SG+  SL  Q            + + D            +  +++I    
Sbjct: 129 AQLQYALPRLSGQGISLSRQGGGIGARGPGETKLETD--------RRHIRNRIHEINGQL 180

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + +  H ++ +        ++I I+G++NAGKS+LFN L   D +   D+   T D +T 
Sbjct: 181 STVKEHRTRYRERRKKNGVFQIAIVGYTNAGKSTLFNQLTDAD-SHEEDLLFATLDPMTR 239

Query: 261 DLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------- 312
            + L  GY V ISDT G  +          + T  EV+ AD +L + + +++        
Sbjct: 240 KMTLASGYSVLISDTVGFIQDLPTTLIAAFRSTLEEVKEADYLLHVIDSSNEDYEGHERT 299

Query: 313 -----EISFPKNIDFIFIGTKSD-LYSTYTEEYDHLI---SSFTGEGLEELINKIKSILS 363
                E      I  + +  K D +   +     H     S+   E ++ L   IK+ L 
Sbjct: 300 VHELLEELEADRIPMLTVYNKEDQIRPDFIPSSKHRHLLISARREEDVKRLKADIKAELK 359

Query: 364 NKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422
             F K     IP+++  L    ++   +E     ++    D               ITG 
Sbjct: 360 QNFLKPYHVKIPAYEGKLISALKSETLVESLEFQKEAELYD---------------ITGF 404

Query: 423 VDVEQ-LLDII 432
              EQ +L  I
Sbjct: 405 SGEEQTILGQI 415


>gi|118497641|ref|YP_898691.1| protease, GTP-binding subunit [Francisella tularensis subsp.
           novicida U112]
 gi|118423547|gb|ABK89937.1| protease, GTP-binding subunit [Francisella novicida U112]
          Length = 436

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 25/266 (9%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E + ++ +  ++ + + L   W                   + ++     ++ +
Sbjct: 117 LRAKTYEGKLQVELAQLNYQSTRLVKGWTHLERQKGGIGVRGGPGETQLEIDRRLIRQRI 176

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I      +  H    +      N   I  +G++NAGKS+LFN +   DV     +  T
Sbjct: 177 KQITQKLEKVKHHRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFAT 236

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
               L   +  +   V  SDT G  +       E    T  E   +DL++ + +   +  
Sbjct: 237 LDPTLRKVIVPKLGEVIFSDTVGFIKNLPHNLVEAFHATLEEAIESDLLVHVIDYADEDH 296

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD------------HLISSFTGE 349
            S+ +            + + I +  K D        +               +S+  G+
Sbjct: 297 KSYIEQVEKVLSEIGIADKETICVYNKIDKLENIKPSFVPLEDSDSSVVARVYLSAQNGD 356

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
           GL E    + +  +  +      +P 
Sbjct: 357 GLVEFYQALATFFNKTWINQTLDLPP 382


>gi|289525420|emb|CBJ14897.1| putative nucleotide-binding protein [Chlamydia trachomatis Sweden2]
 gi|296434973|gb|ADH17151.1| putative nucleotide-binding protein [Chlamydia trachomatis E/150]
 gi|296438693|gb|ADH20846.1| putative nucleotide-binding protein [Chlamydia trachomatis E/11023]
          Length = 447

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 94/265 (35%), Gaps = 23/265 (8%)

Query: 135 ISSETEMQRRLSM-EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           +++E  +Q  L+    +   L  ++G    + +          +  ++ ++     +E +
Sbjct: 141 LTAEAGLQVELAQARYLLPRLKRMWGHLSRQKSGGSGGGFVKGEGEKQIELDRRIVRERI 200

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           + +     ++     + +  +         ++G++N+GKS+L N L   D     +    
Sbjct: 201 HKLSRDLKNVERQREERRKAKKRNQIPTFALIGYTNSGKSTLLNLLTSAD-TYAENKLFA 259

Query: 254 TRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T    L  G  V ++DT G             K T       D++L + + +   
Sbjct: 260 TLDPKTRRCVLPCGQRVLLTDTVGFIRKLPHTLVAAFKSTLEAALQEDILLHVVDASHPL 319

Query: 313 EISFPK------------NIDFIFIGTKSDLYS--------TYTEEYDHLISSFTGEGLE 352
            +   +                I +  K D  +                 +S+ TGEG+ 
Sbjct: 320 ALEHVETTKAILQELGITQPQVITVLNKMDKVADGVTASRLRLMSPNPVCVSAKTGEGIR 379

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK 377
           EL+  ++ ++  ++ +    +P  +
Sbjct: 380 ELLRSMEDMVQEEYPQATLHLPYKE 404


>gi|208779443|ref|ZP_03246789.1| protease, GTP-binding subunit [Francisella novicida FTG]
 gi|208745243|gb|EDZ91541.1| protease, GTP-binding subunit [Francisella novicida FTG]
          Length = 435

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 25/266 (9%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E + ++ +  ++ + + L   W                   + ++     ++ +
Sbjct: 116 LRAKTYEGKLQVELAQLNYQSTRLVKGWTHLERQKGGIGVRGGPGETQLEIDRRLIRQRI 175

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I      +  H    +      N   I  +G++NAGKS+LFN +   DV     +  T
Sbjct: 176 KQITQKLEKVKHHRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFAT 235

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
               L   +  +   V  SDT G  +       E    T  E   +DL++ + +   +  
Sbjct: 236 LDPTLRKVIVPKLGEVIFSDTVGFIKNLPHNLVEAFHATLEEAIESDLLVHVIDYADEDH 295

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD------------HLISSFTGE 349
            S+ +            + + I +  K D        +               +S+  G+
Sbjct: 296 KSYIEQVEKVLSEIGIADKETICVYNKIDKLENIKPSFVPLEDSDSSVVARVYLSAQNGD 355

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
           GL E    + +  +  +      +P 
Sbjct: 356 GLVEFYQALATFFNKTWINQTLDLPP 381


>gi|152980964|ref|YP_001353811.1| HflX GTP-binding protein [Janthinobacterium sp. Marseille]
 gi|151281041|gb|ABR89451.1| HflX GTP-binding protein [Janthinobacterium sp. Marseille]
          Length = 372

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 107/308 (34%), Gaps = 31/308 (10%)

Query: 90  AVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR----RL 145
           AVV+  L+ +     L  A      R    + K+ +++  SL   I ++         ++
Sbjct: 61  AVVDHELDIVIFNHALSPAQQRNLER----HLKVRVVDRTSLILDIFAQRAQSHEGKVQV 116

Query: 146 SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS 205
            +  +    + L   W   L   +  I        + +         +  +    + +  
Sbjct: 117 ELAQLQHLATRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLGVRVKALRAKLDKLHK 175

Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265
             +  +      N + + ++G++NAGKS+LFNALAK    +  D    T D  +  + L 
Sbjct: 176 QHATQRRARGRNNAFSVSLVGYTNAGKSTLFNALAKT-RVLAADQLFATLDTTSRRIYLG 234

Query: 266 GYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------ 318
               V ISDT G             + T  E  +ADL+L + +  S   +   +      
Sbjct: 235 EAGNVVISDTVGFIRELPHQLVAAFRATLEETIHADLLLHVVDGASPVRMEQIEQVNMVL 294

Query: 319 ------NIDFIFIGTKSDLY--------STYTEEYDHLISSFTGEGLEELINKIKSILSN 364
                 +I  I +  K D            Y +     IS+ TG GL+ L   I      
Sbjct: 295 REIGADHIPQILVWNKIDAAGLEPALERDEYDKIRRVFISAQTGSGLDLLREAIAECAQE 354

Query: 365 KFKKLPFS 372
           +   L   
Sbjct: 355 RAAGLEDV 362


>gi|322387377|ref|ZP_08060987.1| GTP-binding protein HflX [Streptococcus infantis ATCC 700779]
 gi|321141906|gb|EFX37401.1| GTP-binding protein HflX [Streptococcus infantis ATCC 700779]
          Length = 412

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 100/266 (37%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNTLTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + ++      
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEE-----LINKI 358
            K            +I  + +  K+DL   +T  +  + + S   +   E     L++KI
Sbjct: 296 EKTVLSIMKDLDMEDIPRLTLYNKADLVENFTPTQTPYALISAKSKDSREQLHALLLDKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 356 KVIFETFTLRVPFSKSYKIHDLESVA 381


>gi|260913831|ref|ZP_05920305.1| GTP-binding protein HflX [Pasteurella dagmatis ATCC 43325]
 gi|260631918|gb|EEX50095.1| GTP-binding protein HflX [Pasteurella dagmatis ATCC 43325]
          Length = 449

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 90/241 (37%), Gaps = 23/241 (9%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           K  +  +      +    +Q +      +   I ++G++NAGKS+LFNA+ + +V    D
Sbjct: 192 KVRIAQLQARLAKVEKQRNQNRQTRQKADIPTISLVGYTNAGKSTLFNAITQANV-YAAD 250

Query: 250 IPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D     L L+      ++DT G             K T  E   A L+L + + 
Sbjct: 251 QLFATLDPTLRRLQLQDVGTTILADTVGFIRHLPHDLVSAFKSTLQETTEASLLLHVIDC 310

Query: 309 NSKKEIS------------FPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFT 347
              +++                 I  + +  K D         ++          IS+ +
Sbjct: 311 AEPRKLENIAAVDEVLVEIKANEIPILLVYNKIDQLEGVEPHIEYDEENKPNAVYISASS 370

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407
           G+G++ L + I+  L N+   L  ++ ++   L H    +  +    +NE+   L  I  
Sbjct: 371 GKGIDLLFDAIRQRLKNEILSLSLTLATYAGKLRHYLYQLDCIRKEDINEQGEFLLEIQI 430

Query: 408 N 408
           +
Sbjct: 431 D 431


>gi|148242390|ref|YP_001227547.1| membrane associated GTPase [Synechococcus sp. RCC307]
 gi|147850700|emb|CAK28194.1| Membrane associated GTPase [Synechococcus sp. RCC307]
          Length = 535

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 19/225 (8%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKIS 272
           + R  +++V+ G  ++GK+SL  AL    V  V    G+T    +  L L G    +++ 
Sbjct: 122 LERGDFRVVVFGSGSSGKTSLIRALLNDQVGSVGAAMGSTTSTNSYRLRLAGLARSIQLR 181

Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-KEISFPK-----NIDFIFIG 326
           DT GI E  +            E   ADLIL + + + +  E S  +         + + 
Sbjct: 182 DTPGILEAGEQGSNRERD-ARSEAVLADLILFVVDGDLRSSEFSVLRSLAEVGKRTLLVL 240

Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
            K DL     E+    +      GL E  + + +  + +    P      +R     ++ 
Sbjct: 241 NKCDLRGETEEQRLLQLLRRRCTGLVESQDVVSASAAPQSVPRPG-----ERPWQPPAEI 295

Query: 387 VRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
            R L   +   +  G +++A+N+ L S  L +       + LLD 
Sbjct: 296 ERLLRRLAAVLRADGEELLADNILLQSSRLAE-----TSQSLLDR 335


>gi|14521269|ref|NP_126744.1| ferrous iron transport protein b - like [Pyrococcus abyssi GE5]
 gi|5458487|emb|CAB49975.1| feoB ferrous iron transport protein B homolog GTP-binding
           [Pyrococcus abyssi GE5]
          Length = 661

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 72/189 (38%), Gaps = 23/189 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G+ N GK+++FNAL       V + PG T +     ++ +G    + D  GI    
Sbjct: 5   VALVGNPNVGKTTIFNALTG-MRQHVGNWPGVTVEKKEGIMEYKGKEYLVVDLPGIYSLT 63

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLY-- 332
                E I R F+   NA +I+ + +            E+      + I    K DL   
Sbjct: 64  AHSVDELIARNFILEGNASVIVDIIDSTCLMRNLFLTLELFEMGVKNVIIALNKIDLLKK 123

Query: 333 ----------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH---KRH 379
                                ++ +GEGL+EL  KI  +   K    P         +R 
Sbjct: 124 RGIHVNIKEMEKILGVPVVPTNAKSGEGLDELKRKISLMAEGKITTNPIVPRYDEDIERE 183

Query: 380 LYHLSQTVR 388
           + H+S+ ++
Sbjct: 184 IQHVSEVIK 192


>gi|325286475|ref|YP_004262265.1| GTP-binding proten HflX [Cellulophaga lytica DSM 7489]
 gi|324321929|gb|ADY29394.1| GTP-binding proten HflX [Cellulophaga lytica DSM 7489]
          Length = 403

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 16/213 (7%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L     S I +    +    G   ++ ++G++N GKS+L N ++
Sbjct: 161 ETEIETDRRIVRDRITLLKKKLSKIDRQMETQRGNRGALVRVALVGYTNVGKSTLMNVVS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K DV    D    T D     + L      +SDT G          E  K T  EV  AD
Sbjct: 221 KSDV-FAEDKLFATLDTTVRKVVLGNLPFLLSDTVGFIRKLPTQLVESFKSTLDEVREAD 279

Query: 301 LILLLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           L+L + +I+               E     +   I +  K D ++  T + D L++  T 
Sbjct: 280 LLLHIVDISHPNFEDHIASVHKILEEIKADDKKTIIVFNKIDQFTHETIDDDDLVTEKTK 339

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                L    K+ +     +  F    +  +L 
Sbjct: 340 IHF-TLEEWKKTWMQKVGDRALFISALNNENLD 371


>gi|289168307|ref|YP_003446576.1| hypothetical protein smi_1474 [Streptococcus mitis B6]
 gi|288907874|emb|CBJ22714.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 412

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 98/266 (36%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNTLTSKIQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + ++      
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTE-----EYDHLISSFTGEGLEEL-INKI 358
            K            +I  + +  K+DL   +T            S  + E L+ L + KI
Sbjct: 296 EKTVLSIMKDLDMEDIPRLTLYNKADLVQDFTPTQTPYALISAKSEDSRENLQALFLEKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 356 KDIFEVFTLRVPFSKSYKIHDLESVA 381


>gi|312127389|ref|YP_003992263.1| small gtp-binding protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311777408|gb|ADQ06894.1| small GTP-binding protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 607

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 21/165 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G+ N GKS +FN L  + V  V++ PGTT DV             I DT G+    
Sbjct: 19  IALVGNPNVGKSVIFNKLTGRYV-EVSNYPGTTVDVNYGFY----KDYVIVDTPGVYGIS 73

Query: 282 DIVEKEGIKR-----TFLEVENADLI-----LLLKE--INSKKEISFPKNIDFIFIGT-- 327
              ++E + R     T   +   D +     L L +  I+ +KE+    N+         
Sbjct: 74  SFNDEEIVTRDIVLNTQKIINVVDSVHLDRDLFLTQQLIDYQKEVIVVLNMVDEVEKNNI 133

Query: 328 KSDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
           K D+              S+  G G+++L   I   L  K K  P
Sbjct: 134 KIDIEKLKESLGVEVIATSASKGIGIDKLREAIDKNLFKKGKSTP 178


>gi|257462449|ref|ZP_05626862.1| hypothetical protein FuD12_01229 [Fusobacterium sp. D12]
          Length = 52

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 22/48 (45%)

Query: 6  ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF 53
          +TI A+ST      ISIIR+SG     + E I   KK    K    Y 
Sbjct: 4  DTIAAISTPRGEGGISIIRISGSESLNILEKIFSPKKNISVKNLRNYG 51


>gi|124023352|ref|YP_001017659.1| GTPase SAR1 and related small G proteins [Prochlorococcus marinus
           str. MIT 9303]
 gi|123963638|gb|ABM78394.1| GTPase SAR1 and related small G proteins [Prochlorococcus marinus
           str. MIT 9303]
          Length = 532

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 26/237 (10%)

Query: 197 LFLKNDISSH-ISQGKLG---EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
             L++D++   + Q +     E+ R    +V+ G  ++GK+SL  AL  + V  V    G
Sbjct: 107 ERLQDDVTREGLKQERERVADELARGDLMVVVFGTGSSGKTSLIRALLNEMVGEVGAPMG 166

Query: 253 TTRDVLTIDLDLEG--YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKE 307
           +T       L L+G    ++++DT GI E        EKE  +R       ADL++++ +
Sbjct: 167 STTSSQIYRLRLKGLDRGLQLADTPGILEAGRAGLSREKEARQRA----SRADLMVVVVD 222

Query: 308 ----INSKKEISFPKN--IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
                +  + IS   N     + +  K DL     E           +GL E  + I   
Sbjct: 223 CDLRASELEVISSLANLGKRLLLVLNKCDLRGEEEERRLLAQLRGRCKGLLEAEDVI--- 279

Query: 362 LSNKFKKLPFSIPSH-KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
                   P S+P   KR L   ++    L   +      G +++A+N+ L    LG
Sbjct: 280 ---SCSAAPQSVPRPGKRPLQPPAEVDNLLRRLASVLHADGEELLADNILLQCRHLG 333


>gi|166154589|ref|YP_001654707.1| putative nucleotide-binding protein [Chlamydia trachomatis 434/Bu]
 gi|166155464|ref|YP_001653719.1| putative nucleotide-binding protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335856|ref|ZP_07224100.1| putative nucleotide-binding protein [Chlamydia trachomatis L2tet1]
 gi|165930577|emb|CAP04074.1| putative nucleotide-binding protein [Chlamydia trachomatis 434/Bu]
 gi|165931452|emb|CAP07028.1| putative nucleotide-binding protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 447

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 94/265 (35%), Gaps = 23/265 (8%)

Query: 135 ISSETEMQRRLSM-EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           +++E  +Q  L+    +   L  ++G    + +          +  ++ ++     +E +
Sbjct: 141 LTAEAGLQVELAQARYLLPRLKRMWGHLSRQKSGGSGGGFVKGEGEKQIELDRRIVRERI 200

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           + +     ++     + +  +         ++G++N+GKS+L N L   D     +    
Sbjct: 201 HKLSRDLKNVERQREERRKAKKRNQIPTFALIGYTNSGKSTLLNLLTSAD-TYAENKLFA 259

Query: 254 TRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T    L  G  V ++DT G             K T       D++L + + +   
Sbjct: 260 TLDPKTRRCVLPCGQRVLLTDTVGFIRKLPHTLVAAFKSTLEAALQEDILLHVVDASHPL 319

Query: 313 EISFPK------------NIDFIFIGTKSDLYS--------TYTEEYDHLISSFTGEGLE 352
            +   +                I +  K D  +                 +S+ TGEG+ 
Sbjct: 320 ALEHVETTKAILQELGITQPQVITVLNKMDKVADGVTASRLRLMSPNPVCVSAKTGEGIR 379

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK 377
           EL+  ++ ++  ++ +    +P  +
Sbjct: 380 ELLRSMEDMVQEEYPQATLHLPYKE 404


>gi|114765527|ref|ZP_01444635.1| GTP-binding protein Era [Pelagibaca bermudensis HTCC2601]
 gi|114542120|gb|EAU45152.1| GTP-binding protein Era [Roseovarius sp. HTCC2601]
          Length = 301

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 74/205 (36%), Gaps = 24/205 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-VALIGEPNAGKSTLTNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQLVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           + +    +++  +   +    +AD+I+LL E +           +     P+        
Sbjct: 63  LFKPRRRLDRAMVAAAWGGAADADIIVLLVEAHRGITEGVERILEGLADLPQGRTVALAI 122

Query: 327 TKS-------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K              DL   Y      +IS+  G G+++L   +   +       P   
Sbjct: 123 NKIDRVEAKVLLKLTEDLNERYAFAKTFMISAEKGHGVKDLREWLAGEVPESPWLYPEDQ 182

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            +        ++  R      L+++
Sbjct: 183 IADLPMRTIAAEITREKLTLRLHQE 207


>gi|260654938|ref|ZP_05860426.1| ribosome biogenesis GTP-binding protein YsxC [Jonquetella anthropi
           E3_33 E1]
 gi|260630253|gb|EEX48447.1| ribosome biogenesis GTP-binding protein YsxC [Jonquetella anthropi
           E3_33 E1]
          Length = 204

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 65/185 (35%), Gaps = 35/185 (18%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
            G +I  +G SN GKS+L N L  + +A V+  PG TR +    ++  G    + D  G 
Sbjct: 21  EGPEIAFVGRSNVGKSTLLNGLMGQKLAHVSSKPGKTRSINFYSVE-AGRKFTLVDLPGF 79

Query: 278 RETD-DIVEKEGIKR-------TFLEVENADLILLLKEINSK--------KEISFPKNID 321
                   E+E   R       T   +    LI+ L +I           +E S      
Sbjct: 80  GYAALSRSERESWNRLIGDFLSTRGALR---LIVHLVDIRHGLLAKDVDFQEWSRNLETP 136

Query: 322 FIFIGTKSDLYSTYTE---------------EYDHLISSFTGEGLEELINKIKSILSNKF 366
              + TK+D  S+                  +   + S+   + +E L N I++ L    
Sbjct: 137 VFVVFTKADKISSGKRSGLVRQYVSAGLRSWDKPLVCSNQEPKTIEALRNFIETFLDRSD 196

Query: 367 KKLPF 371
                
Sbjct: 197 GASEE 201


>gi|251792370|ref|YP_003007096.1| transcriptional regulatory protein TyrR [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533763|gb|ACS97009.1| transcriptional regulatory protein TyrR [Aggregatibacter
           aphrophilus NJ8700]
          Length = 423

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 109/329 (33%), Gaps = 42/329 (12%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSM-------EGMSGELSSLYGQWIDK-------- 164
           N  +   +A +L  L       +  L +           G+L     Q            
Sbjct: 72  NHSLTPAQARNLEALCDCRVVDRNGLILDIFAQRARSHEGKLQVELAQLKHLSIRLVRRK 131

Query: 165 --LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L   +  +        + +      K  +N +      ++   +Q +      +   I
Sbjct: 132 TGLDQQKGAVGLRGPGETQLETDRRLIKVRINQLQSRLEKVAKQRNQNRQTRQKADIPTI 191

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETD 281
            ++G++NAGKS+LFN +   +V    D    T D     L L+      ++DT G     
Sbjct: 192 SLVGYTNAGKSTLFNLITDANV-YAADQLFATLDPTLRRLTLQDVGTTILADTVGFLRDL 250

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIGTKS 329
                   K T  E   A L+L + +            +N   E    + +  + +  K 
Sbjct: 251 PHDLISAFKSTLQETTEASLLLHMIDCADNRKLENIEAVNQVLEEIGAQEVPRLLVYNKI 310

Query: 330 DLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           D         ++          IS+ +G GL+ L+  I+  L+     L  ++P     L
Sbjct: 311 DQLENVAPHIEYDEKHLPSAVYISANSGSGLDLLLEAIRLRLTEHILNLQITLPPSDGKL 370

Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            H    +  +E   +NE+     +++  L
Sbjct: 371 RHAFYQLNCVEKEEINEQGEF--LLSIRL 397


>gi|34496665|ref|NP_900880.1| hypothetical protein CV_1210 [Chromobacterium violaceum ATCC 12472]
 gi|34102520|gb|AAQ58885.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 293

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 18/159 (11%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
             ++      ++ E++     + ++G S AGKSSL NAL  +DVA V D+   T      
Sbjct: 28  EQLNKLRE--RIEELVNYEAAVGLMGKSGAGKSSLCNALFGQDVAEVDDVAPCTVGASEY 85

Query: 261 DLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------- 311
            L    G  + + D  G+ E  D  E    K+    +   DL+L L + + +        
Sbjct: 86  TLAYQNGKGISLIDLPGVGERQD-KEAAYAKQYQEMLPELDLVLWLIKADDRALSVDEQC 144

Query: 312 -KEISFP----KNIDFIFIGTKSDLYSTYTEEYDHLISS 345
            + +  P     +I  +F+  + D       E+D + S 
Sbjct: 145 YQRLILPYLIEHDIPLLFVVNQVDKIEP-CREWDFIHSM 182


>gi|325662184|ref|ZP_08150799.1| ferrous iron transporter B [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331085979|ref|ZP_08335062.1| ferrous iron transporter B [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325471436|gb|EGC74657.1| ferrous iron transporter B [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330406902|gb|EGG86407.1| ferrous iron transporter B [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 681

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 61/181 (33%), Gaps = 20/181 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             +  +G+ N GK++LFNA    ++  V + PG T +        EG   K+ D  GI  
Sbjct: 5   INVGFIGNPNCGKTTLFNAFTGANLK-VANWPGVTVEKKEGYTTYEGEQFKLVDLPGIYS 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                 +E + R  +  +  D+I+ + + +  +                I      D+  
Sbjct: 64  LTSYTMEEKVSRECIMSDEIDVIVDVVDASCLERNLYLTLQLIELGKPVILALNMMDIVE 123

Query: 334 TYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
               E D               S+    GL  L++ +     +  +  P     H +   
Sbjct: 124 ERGMEIDLHRLPEMLGIPAIPVSARKKSGLSVLMHAVSHHADHAIQN-PLIHHHHDKQSR 182

Query: 382 H 382
           H
Sbjct: 183 H 183


>gi|108562916|ref|YP_627232.1| GTP-binding protein Era [Helicobacter pylori HPAG1]
 gi|122980523|sp|Q1CU14|ERA_HELPH RecName: Full=GTPase Era
 gi|107836689|gb|ABF84558.1| GTP-binding protein era-like protein [Helicobacter pylori HPAG1]
          Length = 301

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D+ 
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDMA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   L          + S ++
Sbjct: 128 THKQVLQKLQEYQQYNSQFLALVPLSAKKSQNLNALLECISKHLIPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR 388
                 + +R
Sbjct: 188 MRDIYKEIIR 197


>gi|82779445|ref|YP_405794.1| putative GTPase HflX [Shigella dysenteriae Sd197]
 gi|81243593|gb|ABB64303.1| GTP-binding subunit of protease specific for phage lambda cII
           repressor [Shigella dysenteriae Sd197]
          Length = 426

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPCIDRDEENKPIRVWLSAQTGAGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|76789109|ref|YP_328195.1| GTP-binding protein [Chlamydia trachomatis A/HAR-13]
 gi|76167639|gb|AAX50647.1| HflX [Chlamydia trachomatis A/HAR-13]
          Length = 447

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 94/265 (35%), Gaps = 23/265 (8%)

Query: 135 ISSETEMQRRLSM-EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           +++E  +Q  L+    +   L  ++G    + +          +  ++ ++     +E +
Sbjct: 141 LTAEAGLQVELAQARYLLPRLKRMWGHLSRQKSGGSGGGFVKGEGEKQIELDRRIVRERI 200

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           + +     ++     + +  +         ++G++N+GKS+L N L   D     +    
Sbjct: 201 HKLSRDLKNVERQREERRKAKKRNQIPTFALIGYTNSGKSTLLNLLTSAD-TYAENKLFA 259

Query: 254 TRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T    L  G  V ++DT G             K T       D++L + + +   
Sbjct: 260 TLDPKTRRCVLPCGQRVLLTDTVGFIRKLPHTLVAAFKSTLEAALQEDILLHVVDASHPL 319

Query: 313 EISFPK------------NIDFIFIGTKSDLYS--------TYTEEYDHLISSFTGEGLE 352
            +   +                I +  K D  +                 +S+ TGEG+ 
Sbjct: 320 VLEHVETTKAILQELGITQPQVITVLNKMDKVADGVTASRLRLMSPNPVCVSAKTGEGIR 379

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK 377
           EL+  ++ ++  ++ +    +P  +
Sbjct: 380 ELLRSMEDMVQEEYPQATLHLPYKE 404


>gi|86130796|ref|ZP_01049395.1| GTP-binding protein HflX [Dokdonia donghaensis MED134]
 gi|85818207|gb|EAQ39367.1| GTP-binding protein HflX [Dokdonia donghaensis MED134]
          Length = 408

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 68/180 (37%), Gaps = 15/180 (8%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L       I +    +    G   ++ ++G++N GKS+L N ++
Sbjct: 161 ETEIETDRRIVRDRITLLKKKMKTIDKQMSTQRGNRGALVRVALVGYTNVGKSTLMNVIS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K  V    +    T D     + +      +SDT G          +  K T  EV  AD
Sbjct: 221 KSKV-FAENKLFATLDTTVRKVVIGNLPFLLSDTVGFIRKLPTQLVDSFKSTLDEVREAD 279

Query: 301 LILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           L+L + +I+  +                  +   + +  K D Y     + D L+   TG
Sbjct: 280 LLLHVVDISHPQFEDHINAVNKILDEIKSMDKPTLMVFNKIDAYKAEAYDDDDLMVERTG 339


>gi|51893261|ref|YP_075952.1| ATP/GTP-binding protein [Symbiobacterium thermophilum IAM 14863]
 gi|51856950|dbj|BAD41108.1| ATP/GTP-binding protein [Symbiobacterium thermophilum IAM 14863]
          Length = 464

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 92/260 (35%), Gaps = 30/260 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +V     ++ +  +     +I +H  + +          + + G++NAGKS+L   LA  
Sbjct: 208 EVDRRRIRDRMAALRRELEEIKAHRERLRAERRESAVPVVALTGYTNAGKSTLHRVLAGS 267

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV +  D    T D  T  +   EG    + DT G             + T  EV  ADL
Sbjct: 268 DV-LAEDRLFATLDATTRRVQPAEGEPYLLVDTVGFIHNLPHHLVAAFRSTLEEVNQADL 326

Query: 302 ILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLI------ 343
           +L + + +  K                  +   + +  K D       E DHL+      
Sbjct: 327 LLHVVDASHPKRAEQMATVHRVLEELGAGDKPTLVVYNKIDRVD--PAELDHLMRQTPGA 384

Query: 344 ---SSFTGEGLEELINKIKSILSNKFKKLPFSIPS-HKRHLYHLSQTVRYL-EMASLNEK 398
              ++  G  L+ L   I+  L  + + L   IP      L  + +  R L E    +  
Sbjct: 385 VAVAAALGRNLDRLQAAIQQALHERREVLEVVIPYARSAWLSWVHERGRVLTEEHREDGT 444

Query: 399 DCGLDI---IAENLRLASVS 415
              +++   +A  LR A   
Sbjct: 445 YVTVELERGLAARLRAALDE 464


>gi|330506890|ref|YP_004383318.1| GTP-binding domain/transporter gate domain-containing protein
           [Methanosaeta concilii GP-6]
 gi|328927698|gb|AEB67500.1| GTP-binding domain/transporter gate domain protein [Methanosaeta
           concilii GP-6]
          Length = 568

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 21/155 (13%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284
           +G+ N GKS +F+ L   +V I ++ PGTT D       ++G  V++ D  G        
Sbjct: 1   MGNPNIGKSVVFSRLTGAEV-ITSNYPGTTVDFSRGKARIQGEPVELIDAPGTYSLQPTS 59

Query: 285 EKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE 338
             E +      +  ADLI+ + +  + +                I +    D       +
Sbjct: 60  PVEEV--AVEVLRWADLIVNVVDSTNLERNLFLTLELLESKKPMIVVLNMWDEAKRSGVQ 117

Query: 339 YDHL------------ISSFTGEGLEELINKIKSI 361
            D               ++ TGEG+ EL+ ++   
Sbjct: 118 IDLDGLEARLQVPVVATTALTGEGIAELVRRLDQA 152


>gi|320101591|ref|YP_004177182.1| GTP-binding protein HflX [Isosphaera pallida ATCC 43644]
 gi|319748873|gb|ADV60633.1| GTP-binding protein HflX [Isosphaera pallida ATCC 43644]
          Length = 468

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 78/210 (37%), Gaps = 27/210 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + V   I  LK  ++   ++ +     R     + ++G++NAGKS+L NAL    V
Sbjct: 168 EEDRRLVAKRIQDLKAKLAVVQARKEREVAARTEVPTVSLVGYTNAGKSTLMNALTGAGV 227

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D  T       G  V +SDT G             K T  E   AD++L
Sbjct: 228 -YTADQLFATLDTRTRQWHFKGGGHVLLSDTVGFIRNLPHSLVASFKATLEEARQADVLL 286

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSD----------LYSTYTEEYDH 341
            + + +S +     +            ++  + +  K D          L + + E  + 
Sbjct: 287 HVVDASSHEAERQIEAVEAVLHELALSDVPTLLVLNKCDRVRDQDSLAILRARHPEVVEI 346

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPF 371
             S+ TG GL EL   +++ L+     +  
Sbjct: 347 --SAATGTGLAELEAAVRAKLNETALDVEI 374


>gi|153206772|ref|ZP_01945613.1| GTP-binding proten HflX [Coxiella burnetii 'MSU Goat Q177']
 gi|212218440|ref|YP_002305227.1| GTP-binding protein [Coxiella burnetii CbuK_Q154]
 gi|120577135|gb|EAX33759.1| GTP-binding proten HflX [Coxiella burnetii 'MSU Goat Q177']
 gi|212012702|gb|ACJ20082.1| GTP-binding protein [Coxiella burnetii CbuK_Q154]
          Length = 454

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 23/178 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280
           + ++G++NAGKS+LFNA+ + +V    D    T D     L+L     + + DT G    
Sbjct: 206 VSLVGYTNAGKSTLFNAITEANV-YTADQLFATLDPTFRQLELPTLGKIILVDTVGFIRD 264

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTK 328
                    + T  E   ADL+L + + +S              E    + +  +FI  K
Sbjct: 265 LPHDLIAAFRATLEESRQADLLLHVVDPHSPDSSVMLEEVQKVLETIGAEEVPQLFIYNK 324

Query: 329 SDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            DL  +     D+          +S+ TG G++ L   I  +L +       ++ +++
Sbjct: 325 IDLLESRKPRIDYDEKGKPRRVWLSALTGVGIDLLNPAIVELLGDTILTCEVTLEANE 382


>gi|283781346|ref|YP_003372101.1| GTP-binding proten HflX [Pirellula staleyi DSM 6068]
 gi|283439799|gb|ADB18241.1| GTP-binding proten HflX [Pirellula staleyi DSM 6068]
          Length = 489

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 93/255 (36%), Gaps = 30/255 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + V   I  LK ++     + +     R +   + ++G++NAGKS+L NAL    V
Sbjct: 194 EEDRRLVERRIHELKTELHGVERRKQRQVASRADRLTVSLVGYTNAGKSTLMNALTDAGV 253

Query: 245 AIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +  D    T D  T    L  +  V +SDT G             + T  E   ADL++
Sbjct: 254 -LAADKLFATLDTRTRRWHLPSWGPVLLSDTVGFIRDLPHGLVASFRATLEEARQADLLI 312

Query: 304 LLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE--------EYDHLI 343
            + + ++   +               +  D + +  K D  +   +             I
Sbjct: 313 HVADASNPAVLEQISAVYIVLQELGIEEKDTLLVLNKIDRLADPAQLVAVKQRYPNAITI 372

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           S+ T EG + L + + S LS  F  L   +  S+ R L  LS          +  K    
Sbjct: 373 SAATREGFDRLHDSVSSALSRSFADLDVQAEVSNGRLLAFLS------AHGEVLSKTFSE 426

Query: 403 DIIAENLRLASVSLG 417
           D +  + RL    LG
Sbjct: 427 DRVIVHCRLPHRHLG 441


>gi|237751075|ref|ZP_04581555.1| GTP-binding protein Era [Helicobacter bilis ATCC 43879]
 gi|229373520|gb|EEO23911.1| GTP-binding protein Era [Helicobacter bilis ATCC 43879]
          Length = 300

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 11/120 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV----KISDTAGI 277
           I ++G +NAGKS+L N L K  +A+V+     TR  + I +  E           DT G+
Sbjct: 6   ISVIGRTNAGKSTLLNNLVKSPIALVSKKINATRKRMDIIVPFEDSDYNSQLIFIDTPGL 65

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-EISFPKNI------DFIFIGTKSD 330
            E+  ++ +  ++     V ++DL + +   + KK EI   KN         I +  K D
Sbjct: 66  HESKKLLNEYMLQEAKKAVGDSDLSVFVAVASPKKSEILHYKNFLDQHDKKHIVLLNKID 125


>gi|168216032|ref|ZP_02641657.1| ferrous iron transport protein B [Clostridium perfringens NCTC
           8239]
 gi|182381637|gb|EDT79116.1| ferrous iron transport protein B [Clostridium perfringens NCTC
           8239]
          Length = 669

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 19/155 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ N GK+SLFN L K    I  + PG T +     L  +G   K+ D  G   
Sbjct: 2   LTIALAGNPNCGKTSLFNLLTKSRQHI-GNWPGVTVEKKEGTLKFKGENYKVIDLPGTYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                E E + R ++  +  D+++ + +  + +              + +      D   
Sbjct: 61  LGAYSEDEIVARNYILKDKPDVVINVVDATNLERNLYLTTQLIEMGANVVIALNMIDQAE 120

Query: 334 TYTEEYD------------HLISSFTGEGLEELIN 356
               E D               S+    G+EELI 
Sbjct: 121 ALNIEIDTNKLSKRLGVPIIKTSALKNRGIEELIE 155


>gi|315929184|gb|EFV08408.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 67

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 40/63 (63%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I+++G  N GKSSLFN +A++ +AI +DI GTTRD     + +      + D+ G+ E+D
Sbjct: 4   IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63

Query: 282 DIV 284
           ++ 
Sbjct: 64  ELF 66


>gi|256375573|ref|YP_003099233.1| GTP-binding proten HflX [Actinosynnema mirum DSM 43827]
 gi|255919876|gb|ACU35387.1| GTP-binding proten HflX [Actinosynnema mirum DSM 43827]
          Length = 480

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 76/211 (36%), Gaps = 26/211 (12%)

Query: 198 FLKNDISS---HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            L+ +I+S        + G +      + I G++NAGKSSL NAL    V +   +  T 
Sbjct: 229 KLRREIASMGVIRETKRSGRVANAVPSVAIAGYTNAGKSSLLNALTSAGVLVQDALFATL 288

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
                     +G    ++DT G          E  + T  EV +ADL++ + + +     
Sbjct: 289 DTTTRRTSTPDGLPYTLTDTVGFVRHLPHQLVEAFRSTLEEVADADLLIHVVDGSDSMPE 348

Query: 312 ----------KEISFPKNIDFI---FIGTKSDLYSTYTEEY-------DHLISSFTGEGL 351
                      EI   +         +  K D      +           L+S+ +GEG+
Sbjct: 349 KQVAAVREVIGEIVEKREEPMPPELLVVNKVDAVDELVQARLRNLFPGSQLVSAHSGEGV 408

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           EEL   I  ++      +   +P  +  L  
Sbjct: 409 EELRRVIAGLIPRPEVMVDALVPYARGELVA 439


>gi|239616689|ref|YP_002940011.1| GTP-binding proten HflX [Kosmotoga olearia TBF 19.5.1]
 gi|239505520|gb|ACR79007.1| GTP-binding proten HflX [Kosmotoga olearia TBF 19.5.1]
          Length = 379

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 27/200 (13%)

Query: 204 SSHISQGKLGEIIRNGYK------IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
              I Q K+ E+IR   +      +  +G++N GKSSL +AL   D+ +V +   +T DV
Sbjct: 135 KELIKQRKVREVIRKKRQRNSIPVVSFVGYTNVGKSSLISALTGADL-LVENQLFSTLDV 193

Query: 258 LTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSK 311
            T  L L  G  V ISDT G          +  K T  E + +DL++++ +      + K
Sbjct: 194 KTCRLKLPSGRRVLISDTVGFIRELPQELIQSFKSTLEEAKFSDLLVVVLDASDRYLDEK 253

Query: 312 KEISF-------PKNIDFIFIGTKSD------LYSTYTEEYD-HLISSFTGEGLEELINK 357
            EI          +N+  + +  K D      L        D   +S+     L+EL  K
Sbjct: 254 LEIINSTLRDIGAENVPKLNVINKIDKCTGERLKELGNSFPDAVFVSAVLKYNLDELKEK 313

Query: 358 IKSILSNKFKKLPFSIPSHK 377
           I  +LS  F+K    +P  K
Sbjct: 314 IDIVLSQSFRKYKLVVPPEK 333


>gi|110800234|ref|YP_695571.1| ferrous iron transport protein B [Clostridium perfringens ATCC
           13124]
 gi|168209475|ref|ZP_02635100.1| ferrous iron transport protein B [Clostridium perfringens B str.
           ATCC 3626]
 gi|110674881|gb|ABG83868.1| ferrous iron transport protein B [Clostridium perfringens ATCC
           13124]
 gi|170712382|gb|EDT24564.1| ferrous iron transport protein B [Clostridium perfringens B str.
           ATCC 3626]
          Length = 669

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 19/155 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ N GK+SLFN L K    I  + PG T +     L  +G   K+ D  G   
Sbjct: 2   LTIALAGNPNCGKTSLFNLLTKSRQHI-GNWPGVTVEKKEGTLKFKGESYKVIDLPGTYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                E E + R ++  +  D+++ + +  + +              + +      D   
Sbjct: 61  LGAYSEDEIVARNYILKDKPDVVINVVDATNLERNLYLTTQLIEMGANVVIALNMIDQAE 120

Query: 334 TYTEEYD------------HLISSFTGEGLEELIN 356
               E D               S+    G+EELI 
Sbjct: 121 ALNIEIDTNKLSKRLGVPIIKTSALKNRGIEELIE 155


>gi|145589466|ref|YP_001156063.1| GTP-binding protein, HSR1-related [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047872|gb|ABP34499.1| GTP-binding protein HflX [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 387

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 108/324 (33%), Gaps = 58/324 (17%)

Query: 63  KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122
           +  L +F  P S T + + E H      +   +++    + ++       FS+RA     
Sbjct: 48  EAELAIFNHPLSPTQQRNLERH------IGRHVMDRTGLILDI-------FSQRA--QSH 92

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           I   + E                 +  +   +S L   W                   + 
Sbjct: 93  IGKTQVE-----------------LAQVRYRMSRLVRAWSHLERQRGGIGVRGGPGETQM 135

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           ++           +      +       +     ++ + + ++G++NAGKS+LFNAL K 
Sbjct: 136 ELDRRMLATKAKRLENELEKLQRQQRTQRRARNRKDVFSVSLVGYTNAGKSTLFNALTKA 195

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
                 D    T D  +  + LEG   + +SDT G          E  + T  E  +ADL
Sbjct: 196 G-TYAADQLFATLDTTSRRVHLEGVGSIVVSDTVGFIRDLPHQLVEAFRATLDETIHADL 254

Query: 302 ILLLKE------------INSKKEISFPKNIDFIFIGTKSDLYST-----YTEEYD---- 340
           IL + +            + +  E     +I  I +  K DL           E D    
Sbjct: 255 ILHVIDACSPVAREQKAEVEAVLEEIGADDIPRIEVMNKIDLMPQTFTRGAVLERDGQGF 314

Query: 341 ---HLISSFTGEGLEELINKIKSI 361
                +S+ TG GL+ L + +   
Sbjct: 315 PSQVFLSAQTGLGLDLLRSALAEC 338


>gi|115375124|ref|ZP_01462392.1| tRNA modification GTPase TrmE [Stigmatella aurantiaca DW4/3-1]
 gi|115367870|gb|EAU66837.1| tRNA modification GTPase TrmE [Stigmatella aurantiaca DW4/3-1]
          Length = 69

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436
           +RH   L +    L  A    +   L++++  + LA  +LG+++G    E LLD IF +F
Sbjct: 6   ERHADALRRAAEALGRAHEASRLSTLEVLSGEVGLALEALGEVSGTSASEALLDAIFQRF 65

Query: 437 CIGK 440
           CIGK
Sbjct: 66  CIGK 69


>gi|237802803|ref|YP_002887997.1| putative nucleotide-binding protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804725|ref|YP_002888879.1| putative nucleotide-binding protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273025|emb|CAX09938.1| putative nucleotide-binding protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274037|emb|CAX10831.1| putative nucleotide-binding protein [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 447

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 94/265 (35%), Gaps = 23/265 (8%)

Query: 135 ISSETEMQRRLSM-EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           +++E  +Q  L+    +   L  ++G    + +          +  ++ ++     +E +
Sbjct: 141 LTAEAGLQVELAQARYLLPRLKRMWGHLSRQKSGGSGGGFVKGEGEKQIELDRRIVRERI 200

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           + +     ++     + +  +         ++G++N+GKS+L N L   D     +    
Sbjct: 201 HKLSRDLKNVERQREERRKAKKRNQIPTFALIGYTNSGKSTLLNLLTSAD-TYAENKLFA 259

Query: 254 TRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T    L  G  V ++DT G             K T       D++L + + +   
Sbjct: 260 TLDPKTRRCVLPCGQRVLLTDTVGFIRKLPHTLVAAFKSTLEAALQEDILLHVVDASHPL 319

Query: 313 EISFPK------------NIDFIFIGTKSDLYS--------TYTEEYDHLISSFTGEGLE 352
            +   +                I +  K D  +                 +S+ TGEG+ 
Sbjct: 320 VLEHVETTKAILQELGITQPQVITVLNKMDKVADGVTASRLRLMSPNPVCVSAKTGEGIR 379

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK 377
           EL+  ++ ++  ++ +    +P  +
Sbjct: 380 ELLRSMEDMVQEEYPQATLHLPYKE 404


>gi|88855034|ref|ZP_01129699.1| GTP-binding protein Era [marine actinobacterium PHSC20C1]
 gi|88815562|gb|EAR25419.1| GTP-binding protein Era [marine actinobacterium PHSC20C1]
          Length = 299

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 74/199 (37%), Gaps = 25/199 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ +  +G  N GKS+L NAL  + VAI +  P TTR  +   +  E   + I DT G
Sbjct: 8   RAGF-VTFVGRPNVGKSTLTNALVGEKVAITSSKPQTTRRAIRGLVHREDGQLIIVDTPG 66

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIG 326
           +     ++ +         +   D+I L    N K          +  SFP+      + 
Sbjct: 67  MHRPRTLLGERLNSIVQDTLGEVDVIGLCIPANEKIGPGDRYINEQLDSFPRAKKVAIV- 125

Query: 327 TKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           TK D  S                 +    ISSF    L+ L  ++  +L       P   
Sbjct: 126 TKIDASSRPGVAEQLKAVSELRDWDEIIPISSFDSIQLDILSTELVKLLPISHALYPTDT 185

Query: 374 PSHKRHLYHLSQTVRYLEM 392
            + +     +++ +R   +
Sbjct: 186 VTDESTEARVAELIREAAL 204


>gi|218699419|ref|YP_002407048.1| putative GTP-binding domain [Escherichia coli IAI39]
 gi|218369405|emb|CAR17164.1| conserved hypothetical protein; putative GTP-binding domain
           [Escherichia coli IAI39]
          Length = 311

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 108/273 (39%), Gaps = 30/273 (10%)

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+    +    + E +   L  L   +S HI +  L ++  +     I+G S AGKSSL 
Sbjct: 16  FTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTSHEPVPGIMGKSGAGKSSLC 74

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLE 295
           NAL + +V  V+D+   TR+V    L+  G+ + I+D  G+ E+ D   E E +      
Sbjct: 75  NALFQGEVTPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRDRDAEYEALYCDI-- 132

Query: 296 VENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346
           +   DL L L + + +         + I    +   +F+  ++D  +    E+D      
Sbjct: 133 LPELDLALWLIKADDRALSVDEYFWRHILHRGHQRVLFVVMQAD-KTEPCHEWDMAGIQP 191

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402
           +    + +  K    +   F+ +   +    R    L   V  L  A  +     L    
Sbjct: 192 SPAQAQNIREK-TEAVFRLFRPVHRVVAVSARTGRELDTLVSALMTALPDHAASPLMTRL 250

Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
             ++  E++R  +    + TG V      D IF
Sbjct: 251 QEELRTESVRAQARE--QFTGAV------DRIF 275


>gi|154503158|ref|ZP_02040218.1| hypothetical protein RUMGNA_00982 [Ruminococcus gnavus ATCC 29149]
 gi|153796152|gb|EDN78572.1| hypothetical protein RUMGNA_00982 [Ruminococcus gnavus ATCC 29149]
          Length = 413

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 27/226 (11%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L G   + L+ +   I       ++ ++     +E ++ +     ++  H
Sbjct: 129 LAQLKYRAARLVG-LRNSLSRLGGGIGTRGPGEKKLEMDRRLIRERISRLKKELREVEEH 187

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK----KDVAIVTDIPGTTRDVLTIDL 262
             + +      N     ++G+++AGKSSL NAL      +D  + + +  TTR +   D 
Sbjct: 188 RERLRTQRKRSNLKVAALVGYTSAGKSSLENALTGAGVLEDAMLFSTLDTTTRSLRLADT 247

Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------ 316
                 + +SDT G          E  K T  E + AD+I+ + + ++  + +       
Sbjct: 248 ----QEILLSDTVGFIRKLPHHLVEAFKSTLEEAKYADIIIHVVDASNPHQDTQMFVVYE 303

Query: 317 ------PKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEG 350
                  +    I +  K D   T      +  EY   +S+ TG+G
Sbjct: 304 TLRQLGAEGKPVITVFNKQDKLETPGYFRDFHAEYSIPVSAKTGQG 349


>gi|119512965|ref|ZP_01632026.1| Small GTP-binding protein domain protein [Nodularia spumigena
           CCY9414]
 gi|119462378|gb|EAW43354.1| Small GTP-binding protein domain protein [Nodularia spumigena
           CCY9414]
          Length = 517

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 108/260 (41%), Gaps = 42/260 (16%)

Query: 183 DVQNFSSKEVLNDILFLKNDI--SSHISQGKLGE--IIRNGYKIVILGHSNAGKSSLFNA 238
           D  + + + V   +  +++++   + +S+ +  E  + R   ++V+ G  +AGK+SL NA
Sbjct: 91  DAASTTLQAVKQQVAQIQDEVARQALLSKSREIEVNLARGEIQVVVFGTGSAGKTSLVNA 150

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           +  + V  V    GTT+   T  L L+G    + I+DT GI E       EG +R  L  
Sbjct: 151 IMGRMVGQVNAPMGTTQVGETYCLRLKGLERKILITDTPGILEAG----VEGTEREQLAR 206

Query: 297 E---NADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
           E   +ADL+L + + + ++    P           + +  K+DLY              T
Sbjct: 207 ELATSADLLLFVVDNDLRRSEYEPLRSLAEIGKRSLLVLNKTDLY--------------T 252

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS---------QTVRYLEMASLNEK 398
            E  E ++ +++  +            +       L            +  L   +   +
Sbjct: 253 DEDKESILARLRQRVRGFIAPNDVVAIAGNPQPAQLETGEIFHPEPDIIPLLRRMAAILR 312

Query: 399 DCGLDIIAENLRLASVSLGK 418
             G D++A+N+ L S+ LG+
Sbjct: 313 AEGEDLVADNILLQSLRLGE 332


>gi|313623955|gb|EFR94058.1| GTP-binding protein HflX [Listeria innocua FSL J1-023]
          Length = 407

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 107/284 (37%), Gaps = 40/284 (14%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +++ ++ +      Q  L   +M      G+L   Y Q+           
Sbjct: 79  NSELSATQVRNISKIVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQG 138

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I +      + ++     +E ++DI      +  H  +       ++ ++ 
Sbjct: 139 ASLSKLGGGIGSRGPGESKLEMDKRHIREKMHDIKAQLTHVERHRKRIIDRRNTQSVFRF 198

Query: 223 VILGHSNAGKSSLFNALAK----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            ++G++NAGKS++FN L      ++  +   +  TTR +        G+   ++DT G  
Sbjct: 199 GLIGYTNAGKSTIFNRLTNETTLEEDKLFATLDPTTRKIRFE----GGFQALLTDTVGFI 254

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIG 326
           +          + T  E  N D+++ + + +    +                ++  + I 
Sbjct: 255 QDLPTTLIAAFRSTLEETANVDVLIHVVDASDPDYLQHETTVINLLEELEMNHLPTLIIY 314

Query: 327 TKSDLYST--YTEEYDH-LISSFTGEGLEELINKIKSILSNKFK 367
            K D   +    +  DH LIS+   E  +E+  ++  ++   + 
Sbjct: 315 NKMDKAPSTFVPDRPDHLLISALDQEAPKEIKERMIELIEKNWT 358


>gi|242078515|ref|XP_002444026.1| hypothetical protein SORBIDRAFT_07g006070 [Sorghum bicolor]
 gi|241940376|gb|EES13521.1| hypothetical protein SORBIDRAFT_07g006070 [Sorghum bicolor]
          Length = 435

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 70/205 (34%), Gaps = 35/205 (17%)

Query: 208 SQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
            +   GE+ +       + I+G  NAGKSSL N +    VA V+    TT   +   L  
Sbjct: 132 DEEDFGEVRQEDQMSLSVGIVGAPNAGKSSLTNTMVGTKVAAVSRKTNTTTHEILGVLTK 191

Query: 265 EGYLVKISDTAGIRETDDIVEKE----GIKRTFLEVENADLILLLKEIN----------- 309
               +   DT G+               ++  +  +   DL++++ ++N           
Sbjct: 192 GNTQICFFDTPGLMLGHHGFPYRDVTVRVESAWSSINLYDLLIVMFDVNRHLTLPDSRVI 251

Query: 310 ---SKKEISFPKNIDFIFIGTKSDLYSTYTE--------------EYDHLISSFTGEGLE 352
               +  +    N   I    K DL     +              E   ++S   G+G++
Sbjct: 252 KLIKRLGMEVNPNQRRILCMNKVDLVKDKKDLLKVAKEFEDLPGYERYFMVSGLKGKGVK 311

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK 377
           +L+  +      +      ++ + +
Sbjct: 312 DLVQYLMDQAVRRPWDEEPTVMTEE 336


>gi|224538829|ref|ZP_03679368.1| hypothetical protein BACCELL_03725 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519556|gb|EEF88661.1| hypothetical protein BACCELL_03725 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 419

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 16/212 (7%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q       R    +  ++G++N GKS+L N LAK +V
Sbjct: 181 EMDRRIILNRMSLLKERLAEIDKQKSTQRKNRGRMIRAALVGYTNVGKSTLMNLLAKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + ++     +SDT G          +  K T  EV  ADL+L 
Sbjct: 241 -FAENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLLH 299

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           + +I+    +++I                 I +  K D Y TY E+    ++  T E L 
Sbjct: 300 IVDISHPDFEEQIEVVNKTLADIGASGKPIILVFNKIDAY-TYVEKAADDLTPRTKENL- 357

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
            L   +K+ ++       F     K +L  L 
Sbjct: 358 TLEELMKTWMAKMEDNCLFISAREKINLEELK 389


>gi|288930677|ref|YP_003434737.1| small GTP-binding protein [Ferroglobus placidus DSM 10642]
 gi|288892925|gb|ADC64462.1| small GTP-binding protein [Ferroglobus placidus DSM 10642]
          Length = 313

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 20/183 (10%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           E ++D L   N+    + +      +   + +V+ G+ N GKSS+  A        V   
Sbjct: 129 EQIDDELKFLNEAREKLKEIPT---LSEDFTVVLAGYPNVGKSSII-AEISSVKPEVASY 184

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN-ADLILLLKEIN 309
           P TT+ +    ++ +   +++ DT GI +       E  KR  + +++ ADLI+ + +  
Sbjct: 185 PFTTKKISVGFVEDKDVRIQVIDTPGILDRPISRRNEIEKRAIVALKHLADLIVFVIDPT 244

Query: 310 SKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
                S                   I I +KSDL+          +S  T EG+ EL+N 
Sbjct: 245 ETCGYSLENQLNLLREVKETFKKPLIEIYSKSDLHDFKDR---MRVSVVTKEGIAELLNL 301

Query: 358 IKS 360
           IK 
Sbjct: 302 IKE 304


>gi|255975371|ref|ZP_05425957.1| GTP-binding protein [Enterococcus faecalis T2]
 gi|307277763|ref|ZP_07558849.1| GTP-binding protein HflX [Enterococcus faecalis TX0860]
 gi|255968243|gb|EET98865.1| GTP-binding protein [Enterococcus faecalis T2]
 gi|306505642|gb|EFM74826.1| GTP-binding protein HflX [Enterococcus faecalis TX0860]
          Length = 416

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLMKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 SEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|168212277|ref|ZP_02637902.1| ferrous iron transport protein B [Clostridium perfringens CPE str.
           F4969]
 gi|170716135|gb|EDT28317.1| ferrous iron transport protein B [Clostridium perfringens CPE str.
           F4969]
          Length = 669

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 19/155 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ N GK+SLFN L K    I  + PG T +     L  +G   K+ D  G   
Sbjct: 2   LTIALAGNPNCGKTSLFNLLTKSRQHI-GNWPGVTVEKKEGTLKFKGESYKVIDLPGTYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                E E + R ++  +  D+++ + +  + +              + +      D   
Sbjct: 61  LGAYSEDEIVARNYILKDKPDVVINVVDATNLERNLYLTTQLIEMGANVVIALNMIDQAE 120

Query: 334 TYTEEYD------------HLISSFTGEGLEELIN 356
               E D               S+    G+EELI 
Sbjct: 121 ALNIEIDTNKLSKRLGVPIIKTSALKNRGIEELIE 155


>gi|169343840|ref|ZP_02864837.1| ferrous iron transport protein B [Clostridium perfringens C str.
           JGS1495]
 gi|169297960|gb|EDS80051.1| ferrous iron transport protein B [Clostridium perfringens C str.
           JGS1495]
          Length = 669

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 19/155 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ N GK+SLFN L K    I  + PG T +     L  +G   K+ D  G   
Sbjct: 2   LTIALAGNPNCGKTSLFNLLTKSRQHI-GNWPGVTVEKKEGTLKFKGESYKVIDLPGTYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                E E + R ++  +  D+++ + +  + +              + +      D   
Sbjct: 61  LGAYSEDEIVARNYILKDKPDVVINVVDATNLERNLYLTTQLIEMGANVVIALNMIDQAE 120

Query: 334 TYTEEYD------------HLISSFTGEGLEELIN 356
           +   E D               S+    G+EELI 
Sbjct: 121 SLNIEIDTNKLSKRLGVPIIKTSALKNRGIEELIE 155


>gi|322375539|ref|ZP_08050051.1| GTP-binding protein HflX [Streptococcus sp. C300]
 gi|321279247|gb|EFX56288.1| GTP-binding protein HflX [Streptococcus sp. C300]
          Length = 412

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 101/266 (37%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N+L  K      ++   T D 
Sbjct: 177 RQLKIVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNSLTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + ++      
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEEL----INKI 358
            K            +I  + +  K+DL   +T        IS+ + +  E+L    + KI
Sbjct: 296 EKTVLSIMKDLDMEDIPRLTLYNKADLVEDFTPTQTPYALISAKSEDSREQLQALFLEKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 356 KEIFEAFTLRVPFSKSYKIHDLESVA 381


>gi|307708425|ref|ZP_07644891.1| GTP-binding proten HflX [Streptococcus mitis NCTC 12261]
 gi|307615524|gb|EFN94731.1| GTP-binding proten HflX [Streptococcus mitis NCTC 12261]
          Length = 412

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 99/266 (37%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNTLTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + ++      
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDTSNPYHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEYDHL-----ISSFTGEGLEEL-INKI 358
            K            +I  + +  K+DL   +T            S  + E L+ L + KI
Sbjct: 296 EKTVLSIMKDLDMEDIPRLTLYNKADLVEDFTPTQTPYTLISAKSEDSRENLQTLFLEKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I  +   ++PFS       L  ++
Sbjct: 356 KDIFESFTLRVPFSKSYKIHDLESVA 381


>gi|325957506|ref|YP_004292918.1| GTP-binding protein [Lactobacillus acidophilus 30SC]
 gi|325334071|gb|ADZ07979.1| GTP-binding protein [Lactobacillus acidophilus 30SC]
          Length = 424

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 99/250 (39%), Gaps = 32/250 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
             + + +   I  +K ++ +  SQ ++    RN     K+ ++G++NAGKS+  N L K+
Sbjct: 162 EMNRRTIGKQISAIKKELKAVASQEEIKSARRNQSRIPKVALVGYTNAGKSTTMNGLLKE 221

Query: 243 -------DVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFL 294
                      V ++   T D     +DL+  +   +SDT G          E  K T  
Sbjct: 222 FSKEGSDKEVFVKNMLFATLDTSVRRIDLKDNFSFILSDTVGFISKLPHNLVESFKATLQ 281

Query: 295 EVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTY---TEEY 339
           E ++ADL++ + + +    +               K I  I    K+D         E  
Sbjct: 282 ETKDADLLINVVDASDPNMVQMIRTTQNVLDEIGVKGIPMITAYNKADKTDRNYPQIEGS 341

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYL-----EMA 393
           D L S+   + ++ L + I   + + ++KL  ++P    + L +L +  + L     E  
Sbjct: 342 DILYSAIDPKSIKLLADLITKRVFSNYEKLNLNLPLSAGKELAYLHENAQVLSENYEEDG 401

Query: 394 SLNEKDCGLD 403
              E +   D
Sbjct: 402 VYIEANIAPD 411


>gi|306824920|ref|ZP_07458264.1| GTP-binding protein HflX [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304433131|gb|EFM36103.1| GTP-binding protein HflX [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 412

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 99/266 (37%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNTLTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + ++      
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEE-----LINKI 358
            K            +I  + +  K+DL   +T  +  + + S   E   E      + KI
Sbjct: 296 EKTVLSIMKDLDMEDIPRLTLYNKADLVEDFTPTQTPYALISAKSEDSREQLQALFLEKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I  +   ++PFS       L  ++
Sbjct: 356 KDIFESFTLRVPFSKSYKIHDLESVA 381


>gi|82595196|ref|XP_725747.1| GTP-binding protein Era [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480866|gb|EAA17312.1| GTP-binding protein Era [Plasmodium yoelii yoelii]
          Length = 440

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 204 SSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           S++++  K+ E   N    KI ++G  N+GKSSL N +  K ++ V+    TT+  +   
Sbjct: 78  SAYMNTWKIPEQPENPKFLKIALIGAPNSGKSSLLNTILNKTISSVSPKINTTKQDIKGI 137

Query: 262 LDLEGYLVKISDTAGIRETDDIVE--KEGIKRTFLEVENADLILLLKE 307
              +   +   D+ GI  +    +  KE +   +   E ADL+L + +
Sbjct: 138 YTKDNVQLIFIDSPGIIPSHKKKKFCKELVNYAWKGYEEADLVLFVVD 185


>gi|260593313|ref|ZP_05858771.1| GTP-binding protein HflX [Prevotella veroralis F0319]
 gi|260534725|gb|EEX17342.1| GTP-binding protein HflX [Prevotella veroralis F0319]
          Length = 416

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 17/188 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  +  LK  + + I + K  +    G   ++ ++G++N GKS+  N LAK +
Sbjct: 181 EMDRRIILQRMSLLKQRL-AEIDKQKTTQRKNRGRLIRVALVGYTNVGKSTTMNLLAKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + +E     ++DT G          +  K T  EV  ADL+L
Sbjct: 240 V-FAENKLFATLDTTVRKVVVENLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLL 298

Query: 304 LLKEINS---KKEISFPK---------NIDFIFIGTKSDLYSTY-TEEYDHLISSFTGEG 350
            + +I+    +++I             +   + I  K D Y     EE D   ++     
Sbjct: 299 HVVDISHPDFEEQIQVVNQTLSELGCADKPSMIIFNKIDNYHWIEKEEDDLTPATKENIT 358

Query: 351 LEELINKI 358
           L+EL    
Sbjct: 359 LDELKKTW 366


>gi|71029562|ref|XP_764424.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351378|gb|EAN32141.1| hypothetical protein, conserved [Theileria parva]
          Length = 276

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
            K+ +LG  N+GKSS  N++    ++ V+    TTR+ +   L ++   + + D+ GI  
Sbjct: 12  LKVALLGLPNSGKSSFLNSILNSTISAVSPKVNTTREDIKGILTIDNCQIVLIDSPGIIA 71

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308
                   K+ ++  +   + ADL L L + 
Sbjct: 72  SHKRRKFCKDLVRTAWKGFDEADLCLFLVDA 102


>gi|162448206|ref|YP_001621338.1| HflX subfamily GTP-binding protein [Acholeplasma laidlawii PG-8A]
 gi|161986313|gb|ABX81962.1| GTP-binding protein, HflX subfamily [Acholeplasma laidlawii PG-8A]
          Length = 416

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 19/185 (10%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA---KKDVAIVT--DIPGTT 254
              I     + +      +   + ++G++NAGKSSL N L+     +   V   D+   T
Sbjct: 177 LEGIKKERGESRKRRFKNSIPVVALVGYTNAGKSSLMNHLSNLYGTNKTEVFEKDMLFAT 236

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN--SK 311
            D  +  +  +      + DT G          +  + T  ++ +ADLIL + +    S 
Sbjct: 237 LDTKSKRIQKDNQPPFILIDTVGFISKLPPELIKSFESTLADIASADLILHIVDGKNYSP 296

Query: 312 KEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKS 360
            +I+F K             + + TK DL        +    IS+ TGEG+ +L   I +
Sbjct: 297 LQINFTKQVIKDLGLEETPRLLVVTKKDLLVHQPNILEDYLLISNKTGEGMNDLYQAISA 356

Query: 361 ILSNK 365
            +   
Sbjct: 357 HIYKD 361


>gi|32474656|ref|NP_867650.1| ferrous iron transport protein B [Rhodopirellula baltica SH 1]
 gi|32445195|emb|CAD75197.1| ferrous iron transport protein B [Rhodopirellula baltica SH 1]
 gi|327540668|gb|EGF27240.1| ferrous iron transport protein B [Rhodopirellula baltica WH47]
          Length = 671

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 23/166 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + ++G+ N GK+SLFN L    +A  ++  GTT D  T   DL EG    + D  G+   
Sbjct: 26  VAMVGNPNVGKTSLFNRLTNL-LAKTSNFAGTTVDRRTGTADLNEGQSCTLVDLPGLYSL 84

Query: 281 DDIVEKEGIKRTFLEVEN---ADLILLLKEINS-KKEISFPK-----NIDFIFIGTKSDL 331
                +E I R F+  E+    + +L++ +  + ++ ++  +         +      +L
Sbjct: 85  TASSPEEQIARAFITGESECPPEGVLVVVDATNLQRSLAVAREAIQCGRPTLVAVNMIEL 144

Query: 332 YSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNK 365
                 + D              +S+ TGEGL+EL + ++ +L  +
Sbjct: 145 ARKSGVDVDLDVLSQKLGCPVIGVSARTGEGLDELKSNLRQLLHPR 190


>gi|147669311|ref|YP_001214129.1| GTP-binding protein, HSR1-related [Dehalococcoides sp. BAV1]
 gi|146270259|gb|ABQ17251.1| GTP-binding protein HflX [Dehalococcoides sp. BAV1]
          Length = 403

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 4/178 (2%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E Q ++ +  M   L  L GQW   L  +   I        + +      +  + 
Sbjct: 126 HANTREGQLQVELAQMQYLLPRLAGQWSH-LERLGGGIGTRGPGESQLETDKRIVRTKIR 184

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           ++    ++++      +    +R    + ++G++N+GKSSL NA+A+ DV +  +    T
Sbjct: 185 NLKEHLDEVTIQRELYRERRRMRGVPVVSLVGYTNSGKSSLLNAVARTDV-LAENKLFAT 243

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            D  T  L + G   V ++DT G          +  + T  E+  ADL++ + +I +K
Sbjct: 244 LDPTTRRLYINGLGNVLLTDTVGFIRKLPPAIVKAFRATLEEINQADLLVHVVDITAK 301


>gi|327184207|gb|AEA32654.1| GTP-binding protein [Lactobacillus amylovorus GRL 1118]
          Length = 424

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 99/250 (39%), Gaps = 32/250 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
             + + +   I  +K ++ +  SQ ++    RN     K+ ++G++NAGKS+  N L K+
Sbjct: 162 EMNRRTIGKQISAIKKELKAVASQEEIKSARRNQSRIPKVALVGYTNAGKSTTMNGLLKE 221

Query: 243 -------DVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFL 294
                      V ++   T D     +DL+  +   +SDT G          E  K T  
Sbjct: 222 FSKEGSDKEVFVKNMLFATLDTSVRRIDLKDNFSFILSDTVGFISKLPHNLVESFKATLQ 281

Query: 295 EVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTY---TEEY 339
           E ++ADL++ + + +    +               K I  I    K+D         E  
Sbjct: 282 ETKDADLLINVVDASDPNMVQMIRTTQNVLDEIGVKGIPMITAYNKADKTDRNYPQIEGS 341

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYL-----EMA 393
           D L S+   + ++ L + I   + + ++KL  ++P    + L +L +  + L     E  
Sbjct: 342 DILYSAIDPKSIKLLADLITKRVFSNYEKLNLNLPLSAGKELAYLHENAQVLSENYEEDG 401

Query: 394 SLNEKDCGLD 403
              E +   D
Sbjct: 402 VHIEANIAPD 411


>gi|332527859|ref|ZP_08403896.1| GTP-binding proten HflX [Rubrivivax benzoatilyticus JA2]
 gi|332112436|gb|EGJ12229.1| GTP-binding proten HflX [Rubrivivax benzoatilyticus JA2]
          Length = 371

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 75/237 (31%), Gaps = 30/237 (12%)

Query: 156 SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215
            L  +W                   + ++      E +  +      +       +    
Sbjct: 125 RLVRRWSHLERQRGGIGTRGGPGEAQIELDRRMIGERIKSVKARLEKVKQQRGTQRRARE 184

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISD 273
            R  +++ ++G++NAGKS+LFNAL K       D    T D  T  L L   G  V +SD
Sbjct: 185 RRGTFRVSLVGYTNAGKSTLFNALVKA-KTYAADQLFATLDTTTRSLWLGEAGMSVSLSD 243

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNID 321
           T G          E  + T  E  +ADL+L + +  S   +                 + 
Sbjct: 244 TVGFIRDLPHKLVEAFEATLREAADADLLLHVVDAASPALLEQQAEVERVLEEIGASGVP 303

Query: 322 FIFIGTKSDLYSTYT---------------EEYDHLISSFTGEGLEELINKIKSILS 363
            I +  K DL                          +S+  G+GL+ L   I     
Sbjct: 304 QILVFNKCDLLEDSRLPRCPRDEVEVHPGVRRARVFVSARDGQGLDSLRQLIADAAH 360


>gi|317493570|ref|ZP_07951991.1| GTP-binding protein HflX [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918513|gb|EFV39851.1| GTP-binding protein HflX [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 426

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 61/349 (17%), Positives = 118/349 (33%), Gaps = 40/349 (11%)

Query: 70  PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAE 129
           P P+ F GE  AE        +   + E  A +     A      R   +  +  +++  
Sbjct: 52  PHPKYFVGEGKAE-------EIAQAVQETGASVVLFDHALSAAQERNLEKLCQCRVIDRT 104

Query: 130 SLADLISSETEMQR----RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185
            L   I ++         ++ +  +    + L   W   L   +  I        + +  
Sbjct: 105 GLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETD 163

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
               ++ ++ IL     +     QG+      +   + ++G++NAGKS+LFN + K DV 
Sbjct: 164 RRLLRDRISLILSRLERVEKQRDQGRRARSRADVPTVSLVGYTNAGKSTLFNHITKADV- 222

Query: 246 IVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
              D    T D     +++       ++DT G             K T  E   A L+L 
Sbjct: 223 YAADQLFATLDPTLRRIEVADVGTTVLADTVGFIRHLPHDLVAAFKATLQETRQASLLLH 282

Query: 305 LKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HL 342
           + + +  +             EI     I  + +  K D+   +    D           
Sbjct: 283 IIDASDARVDENIDAVNTVLAEIE-ADEIPVLLVMNKIDMLDEFEPRIDRNDENLPVRVW 341

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
           +S+ TG G++ L   +   LS +       +P      R  ++  Q + 
Sbjct: 342 VSAQTGVGIDLLFQALTERLSGEIASFELRLPPAAGRLRSRFYQLQAIE 390


>gi|74317381|ref|YP_315121.1| putative GTP-binding protein [Thiobacillus denitrificans ATCC
           25259]
 gi|74056876|gb|AAZ97316.1| putative GTP-binding protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 458

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 30/229 (13%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK----IVILGHSNAGKSSLFN 237
           E       +++ + I  L+ +I++  +  K     R  ++    + ++G++NAGKS+L  
Sbjct: 190 ESHTELDKRKIRDRIAELQKEIAAMDADRKTQRARRQAHQGLASVALVGYTNAGKSTLMR 249

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEV 296
           AL   +V +V +    T D     L  EG   V +SDT G  +          K T  E 
Sbjct: 250 ALTGSEV-LVANKLFATLDTTVRTLHPEGVPRVLVSDTVGFIKNLPHGLVASFKSTLEEA 308

Query: 297 ENADLILLLKEINSK------------KEISFPKNIDFIFIGTKSD-LYSTYTEEYD--- 340
            +A L+L + + +               E    +++  + I  K D L     +      
Sbjct: 309 LDASLLLHVIDASDPGFVRQIETTEDVLEEIDAQDVPRLRIFNKIDHLGDAVAQAEREAA 368

Query: 341 --------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                    ++S+   E + +L + I +       +    +P   + L 
Sbjct: 369 LRAAYPGCIVMSARRPEDVAKLHDAILTFFQKDLVEAELFLPWSAQQLR 417


>gi|75812451|ref|YP_320070.1| ferrous iron transport protein B [Anabaena variabilis ATCC 29413]
 gi|75705207|gb|ABA24881.1| Ferrous iron transport protein B [Anabaena variabilis ATCC 29413]
          Length = 778

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 23/165 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278
           I ++G+ N GK++LFNAL   +     + PG T +         G  + + D  G+    
Sbjct: 6   IALVGNPNCGKTTLFNALTGANQ-RTGNWPGVTVERKEGKYIHNGKNITVVDLPGVYSLD 64

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------EISFPKNIDFIFIGT 327
            E  D    E I R +L    AD+I+ + + ++ +          E+  P  +    +  
Sbjct: 65  AEDSDTGLDELIARDYLLAGEADVIINIVDASNLERNLYLTTQIMEMRLPMIVALNMMDV 124

Query: 328 KSD--------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
             D        L S         +S+ +G+G+ EL + I   L N
Sbjct: 125 AKDREIKINPTLLSQRLGCPVIPMSATSGKGVPELQDAINQSLVN 169


>gi|57639947|ref|YP_182425.1| GTP-binding protein [Thermococcus kodakarensis KOD1]
 gi|57158271|dbj|BAD84201.1| GTP-binding protein [Thermococcus kodakarensis KOD1]
          Length = 185

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 69/178 (38%), Gaps = 38/178 (21%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----------DLEGY- 267
            K+ I+G  N GKS+L NAL    V+ V ++PGTT+ V+                  G  
Sbjct: 2   IKVAIIGAENVGKSTLMNALIGGKVSEVENLPGTTKGVIRRRFGKLKIPKGMKNPYGGAD 61

Query: 268 LVKISDTAGIRETDD-----IVEKEGIKRTFLEVENADLILLLKEINSKKE--------- 313
              + DTAG+ + +      ++ +E  +    E+ +AD+I+ + +               
Sbjct: 62  EFVLIDTAGLFDPERELRGKVLSEEKFREIINEITSADIIIHMVDATVGLHRGMEKLHHM 121

Query: 314 ISFPKNIDFIFIGTKSDL------------YSTYTEEYDHLISSFTGEGLEELINKIK 359
           + F      I +  K DL                 E+    +S  T EG  EL+ +I 
Sbjct: 122 LKFRYEKPIIVVINKIDLVPRERVEELREIIKKRLEQEPIALSLVTYEGFNELLERIA 179


>gi|188535084|ref|YP_001908881.1| putative GTPase HflX [Erwinia tasmaniensis Et1/99]
 gi|188030126|emb|CAO98012.1| GTP-binding protein HflX [Erwinia tasmaniensis Et1/99]
          Length = 426

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 99/282 (35%), Gaps = 34/282 (12%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIT 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +S    QG+      +   + ++G++NAGKS+LFN L   +V    D    T
Sbjct: 173 LILSRLERVSKQREQGRQARNKADVPTVSLVGYTNAGKSTLFNRLTSAEV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     +D+     V ++DT G             K T  E   A L+L + +     +
Sbjct: 232 LDPTLRRVDVADVGEVVLADTVGFIRHLPHDLVAAFKATLQETREAALLLHIVDA---AD 288

Query: 314 ISFPKNIDFI---------------FIGTKSDLYSTYTEEYD---------HLISSFTGE 349
           +   +NID +                +  K D+   +    D           +S+ TGE
Sbjct: 289 LRIEENIDAVNVVLEEIESDEIPSLLVMNKIDMLDGFVPRIDRDEENLPVRVWLSAQTGE 348

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
           G+  L   +   L+ +  +    +P      R  ++  Q + 
Sbjct: 349 GIPLLFQALTERLAGEIAQFELCLPPAAGRLRSRFYQLQAIE 390


>gi|182625195|ref|ZP_02952971.1| dihydrofolate reductase [Clostridium perfringens D str. JGS1721]
 gi|177909654|gb|EDT72088.1| dihydrofolate reductase [Clostridium perfringens D str. JGS1721]
          Length = 669

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 19/155 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ N GK+SLFN L K    I  + PG T +     L  +G   K+ D  G   
Sbjct: 2   LTIALAGNPNCGKTSLFNLLTKSRQHI-GNWPGVTVEKKEGTLKFKGESYKVIDLPGTYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                E E + R ++  +  D+++ + +  + +              + +      D   
Sbjct: 61  LGAYSEDEIVARNYILKDKPDVVINVVDATNLERNLYLTTQLIEMGANVVIALNMIDQAE 120

Query: 334 TYTEEYD------------HLISSFTGEGLEELIN 356
               E D               S+    G+EELI 
Sbjct: 121 ALNIEIDTNKLSKRLGVPIIKTSALKNRGIEELIE 155


>gi|168206245|ref|ZP_02632250.1| ferrous iron transport protein B [Clostridium perfringens E str.
           JGS1987]
 gi|170662274|gb|EDT14957.1| ferrous iron transport protein B [Clostridium perfringens E str.
           JGS1987]
          Length = 669

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 19/155 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ N GK+SLFN L K    I  + PG T +     L  +G   K+ D  G   
Sbjct: 2   LTIALAGNPNCGKTSLFNLLTKSRQHI-GNWPGVTVEKKEGTLKFKGESYKVIDLPGTYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                E E + R ++  +  D+++ + +  + +              + +      D   
Sbjct: 61  LGAYSEDEIVARNYILKDKPDVVINVVDATNLERNLYLTTQLIEMGANVVIALNMIDQAE 120

Query: 334 TYTEEYD------------HLISSFTGEGLEELIN 356
               E D               S+    G+EELI 
Sbjct: 121 ALNIEIDTNKLSKRLGVPIIKTSALKNRGIEELIE 155


>gi|167039788|ref|YP_001662773.1| ferrous iron transport protein B [Thermoanaerobacter sp. X514]
 gi|256752114|ref|ZP_05492981.1| ferrous iron transport protein B [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|289578850|ref|YP_003477477.1| ferrous iron transporter B [Thermoanaerobacter italicus Ab9]
 gi|300914968|ref|ZP_07132283.1| ferrous iron transport protein B [Thermoanaerobacter sp. X561]
 gi|307724888|ref|YP_003904639.1| ferrous iron transport protein B [Thermoanaerobacter sp. X513]
 gi|166854028|gb|ABY92437.1| ferrous iron transport protein B [Thermoanaerobacter sp. X514]
 gi|256749023|gb|EEU62060.1| ferrous iron transport protein B [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|289528563|gb|ADD02915.1| ferrous iron transport protein B [Thermoanaerobacter italicus Ab9]
 gi|300888692|gb|EFK83839.1| ferrous iron transport protein B [Thermoanaerobacter sp. X561]
 gi|307581949|gb|ADN55348.1| ferrous iron transport protein B [Thermoanaerobacter sp. X513]
          Length = 680

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 88/249 (35%), Gaps = 43/249 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ N+GK++LFN L       V + PG T +     L  EG  + + D  G   
Sbjct: 12  LVIALAGNPNSGKTTLFNDLTGS-RQHVGNWPGVTVEKKEGKLKFEGVDINVVDLPGTYS 70

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                E E + R F+  +  D+++ + +  + +            N + +      D   
Sbjct: 71  LGAYTEDEVVARNFIIYDKPDVVVNVVDATNLERNLYLTMQLLEMNANVVLALNMYDEAK 130

Query: 334 TYTEEYDHLISSF------------TGEGLEELINKIKSILS---------NKFKKLPFS 372
               + D    S                G++EL+  +  +           +  K++   
Sbjct: 131 AKGIQIDVEKLSKLLRVPVIPTVATKNVGIKELLQAVLKVYESKEKEVYKVDYGKEIEEE 190

Query: 373 IPSHKRHLYHLSQ-TVRYLE---MASLNEKDCGL--------DIIAENLRLASVSLGKIT 420
           I   K+ +      T R+L       L E D  L        DI+++ L+ +   L ++ 
Sbjct: 191 IDKLKKLIEKEENLTKRFLARWLAVKLLENDENLIKEIENYKDILSQ-LKESRKYLEEVL 249

Query: 421 GCVDVEQLL 429
           G     ++L
Sbjct: 250 GEDA--EIL 256


>gi|309787677|ref|ZP_07682288.1| GTP-binding proten HflX [Shigella dysenteriae 1617]
 gi|308924427|gb|EFP69923.1| GTP-binding proten HflX [Shigella dysenteriae 1617]
          Length = 403

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 91  RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 149

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 150 QIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT-EARVYAADQLFAT 208

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 209 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 268

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 269 QENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPCIDRDEENKPIRVWLSAQTGAGIP 328

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 329 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 367


>gi|212696007|ref|ZP_03304135.1| hypothetical protein ANHYDRO_00543 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676994|gb|EEB36601.1| hypothetical protein ANHYDRO_00543 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 109

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +++G+ + ++G +N GKS+L   +  + ++I+++ P TTRD + I  + E   +   DT 
Sbjct: 1   MKSGF-VSVVGRANVGKSTLMEKILGEKISIISNKPQTTRDEIKIIYNDENSQIIFLDTP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           GI+   + +++  ++ +   ++++D++  + +
Sbjct: 60  GIQTPRNKLQEHLLEVSEDSLKDSDIVTFIVD 91


>gi|163751984|ref|ZP_02159195.1| ferrous iron transport protein B [Shewanella benthica KT99]
 gi|161328142|gb|EDP99309.1| ferrous iron transport protein B [Shewanella benthica KT99]
          Length = 763

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 13/140 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
           +  V +G+ NAGKS+LFNAL   +   V +  G T +  T    L G  V ++D  GI  
Sbjct: 5   FHCVTVGNPNAGKSTLFNALTGANQQ-VGNWSGVTVEKKTGLFTLNGTDVSLTDLPGIYD 63

Query: 278 ----RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGT 327
                ++ D    E I + FL  +  D I+ L +  + +             I  + +  
Sbjct: 64  LLPAGKSCDCSLDEQIAQQFLAEQQIDGIINLVDATNIERHLYLTIQLLELGIPMVVVLN 123

Query: 328 KSDLYSTYTEEYDHLISSFT 347
           K D    +  E D    S T
Sbjct: 124 KIDAAKRHGIEVDVEQMSKT 143


>gi|293416385|ref|ZP_06659024.1| hypothetical protein ECDG_03140 [Escherichia coli B185]
 gi|291431741|gb|EFF04724.1| hypothetical protein ECDG_03140 [Escherichia coli B185]
          Length = 290

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 102/247 (41%), Gaps = 27/247 (10%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L +   +         
Sbjct: 79  LSGHGHSMIITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKAEDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELINKIKSILSNKFKK 368
           + I    +   +F+ T++D  +    E+D      S    + + E  + +  +       
Sbjct: 137 RHILHRGHQQVLFVVTQAD-KTEPCHEWDMAGIQPSPAQAQNIREKTDAVFRLFRPVHPV 195

Query: 369 LPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426
           +  S  +       +S  +  L    AS        ++  E++R  +    + TG V   
Sbjct: 196 VAVSACTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQARE--QFTGAV--- 250

Query: 427 QLLDIIF 433
              D IF
Sbjct: 251 ---DRIF 254


>gi|300939321|ref|ZP_07153993.1| conserved hypothetical protein [Escherichia coli MS 21-1]
 gi|300455788|gb|EFK19281.1| conserved hypothetical protein [Escherichia coli MS 21-1]
          Length = 210

 Score = 67.2 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 18/199 (9%)

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+    +    + E +   L  L   +S HI +  L ++  +   I I+G S AGKSSL 
Sbjct: 15  FTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLC 73

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLE 295
           NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ D   E E + R    
Sbjct: 74  NALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDI-- 131

Query: 296 VENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---HLI 343
           +   DL+L L + + +         + I    +   +F+ T++D  +    E+D      
Sbjct: 132 LPELDLVLWLIKADDRALSVDEYFWRHILQCGHQQVLFVVTQAD-KTEPCHEWDMAGIQP 190

Query: 344 SSFTGEGLEELINKIKSIL 362
           S    + + E    +  + 
Sbjct: 191 SPAQEQNIREKTEAVFRLF 209


>gi|254374455|ref|ZP_04989937.1| GTP-binding protein [Francisella novicida GA99-3548]
 gi|151572175|gb|EDN37829.1| GTP-binding protein [Francisella novicida GA99-3548]
 gi|332678349|gb|AEE87478.1| GTP-binding protein HflX [Francisella cf. novicida Fx1]
          Length = 435

 Score = 67.2 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 89/266 (33%), Gaps = 25/266 (9%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E + ++ +  ++ + + L   W                   + ++     ++ +
Sbjct: 116 LRAKTYEGKLQVELAQLNYQSTRLVKGWTHLERQKGGIGVRGGPGETQLEIDRRLIRQRI 175

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I      +  H    +      N   I  +G++NAGKS+LFN +   DV     +  T
Sbjct: 176 KQITQKLEKVKHHRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFAT 235

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
               L   +  +   V  SDT G  +       E    T  E   +DL++ + +   +  
Sbjct: 236 LDPTLRKVIVPKLGEVIFSDTVGFIKNLPHNLVEAFHATLEEAIESDLLVHVIDYADEDH 295

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD------------HLISSFTGE 349
            S+ +            + + I +  K D        +               +S+  G+
Sbjct: 296 KSYIEQVEKVLSEIGIADKETICVYNKIDKLENIKPSFVPLEDSDSSVVARVYLSAQNGD 355

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
           GL EL   +    +  +      +P 
Sbjct: 356 GLVELYQALAIFFNKTWINQTLDLPP 381


>gi|119493901|ref|ZP_01624464.1| Small GTP-binding protein domain protein [Lyngbya sp. PCC 8106]
 gi|119452341|gb|EAW33534.1| Small GTP-binding protein domain protein [Lyngbya sp. PCC 8106]
          Length = 550

 Score = 67.2 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 95/260 (36%), Gaps = 37/260 (14%)

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEII-----------RNGYKIVILGHSNAGK 232
           V    ++     +  ++  +     +     II           R   K+VI G  +AGK
Sbjct: 84  VPVDKTEAAEESLKTIRQQVHKIQDEVARQAIINRTDEIEEFLSRGNIKVVIFGTGSAGK 143

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEG-I 289
           +S+ NAL  + V  V    GTT    T  L L+G    + I+DT GI E  +     G +
Sbjct: 144 TSIVNALMGRMVGKVNAPMGTTEVGETYHLQLKGLEREILITDTPGILEAGEAGSHRGTL 203

Query: 290 KRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTYTEEYDHLI 343
            RT      ADL+L + + + ++    P           + +  K D Y+   +      
Sbjct: 204 ARTL--ATEADLLLFVVDNDLRQSEYQPLYSLAEIGKRSLLVFNKIDRYTEDDQNII--- 258

Query: 344 SSFTGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
                  L  L  ++K+ +S +            I             +  +   +   +
Sbjct: 259 -------LSRLEERVKTFISPEDIVRVAANPQGVILDTGEQFKPEPDIMPLIRQMAKVLR 311

Query: 399 DCGLDIIAENLRLASVSLGK 418
             G D+IA+N+ L S  LG+
Sbjct: 312 AEGEDLIADNILLQSQRLGE 331


>gi|302830428|ref|XP_002946780.1| hypothetical protein VOLCADRAFT_56252 [Volvox carteri f.
           nagariensis]
 gi|300267824|gb|EFJ52006.1| hypothetical protein VOLCADRAFT_56252 [Volvox carteri f.
           nagariensis]
          Length = 480

 Score = 67.2 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 29/165 (17%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGT--TRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++G  N GKS+LFN L ++ VA+V D P +  TRD       L   + + +DT+G+    
Sbjct: 1   LVGRPNVGKSALFNRLLRRRVALVYDTPNSHVTRDYQEGRAQLGDLVFRAADTSGLEPRG 60

Query: 282 DIVEKEGIKR----TFLEVENADLILLLKEIN----------SKKEISFPKNIDFIFIGT 327
                    R    T   +    L LL+ +            ++  +        + +  
Sbjct: 61  GSWRGSINARATSITTALLRQCHLTLLVLDAKDGVLPADEEVAQWLLRHVPRDQVLVVAN 120

Query: 328 KSDLYSTYTE-------------EYDHLISSFTGEGLEELINKIK 359
           K++      E                  +S+ TGEGL +L   ++
Sbjct: 121 KAEGARARDEMPQTVYDCYRLGFGEPVAVSAATGEGLADLYTALQ 165



 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 30/138 (21%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
            K+ I+G  NAGKS+L N L  ++ A+    PG TRD +          V++ DTAG   
Sbjct: 199 LKLGIMGLPNAGKSTLLNRLLGEERALTGPEPGLTRDAVRAMWMYGNQPVELIDTAGWIG 258

Query: 278 -----RETDDIVEKEGIKRTF------------LEVENADLILLLKEINSKKEISFP--- 317
                R     + ++   R+                  ++ +L      +++E+S     
Sbjct: 259 VGRTARWAVAALSRQCTLRSLAQVHVAVLVVDVERALRSNRVL------ARRELSLASHV 312

Query: 318 --KNIDFIFIGTKSDLYS 333
             +    + +  K D+ S
Sbjct: 313 IREGKALVLVANKMDVLS 330


>gi|28210676|ref|NP_781620.1| ferrous iron transport protein B [Clostridium tetani E88]
 gi|28203114|gb|AAO35557.1| ferrous iron transport protein B [Clostridium tetani E88]
          Length = 587

 Score = 67.2 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 28/192 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GK+SLFNAL   +   V +  G T +     +D    LVKI D  GI  
Sbjct: 2   ITVALVGNPNVGKTSLFNALTGSNQ-YVGNWAGVTVEKKEGYID---NLVKIVDLPGIYA 57

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYS 333
            D    +E + + +L  EN D+IL + + ++ +   +            I +    D+  
Sbjct: 58  MDTYSNEEKVSKNYLSTENIDVILNIADASNLERNLYLTYQLKEFKKPIILLLNMMDIVE 117

Query: 334 TYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
               + D              IS+    G+++L   +K                ++    
Sbjct: 118 EKNIKIDLELLSRELNVKVIPISASKNMGIDKLKETLK------VSNFSDINIDNEFQFR 171

Query: 382 HLSQTVRYLEMA 393
              +T   +E  
Sbjct: 172 SEEETYSLIEKV 183


>gi|14521819|ref|NP_127295.1| GTP-binding protein Era related [Pyrococcus abyssi GE5]
 gi|5459039|emb|CAB50525.1| Hypothetical protein, possibly GTP-binding [Pyrococcus abyssi GE5]
          Length = 186

 Score = 67.2 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 38/178 (21%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----------DLEGY- 267
            K+ I+G  N GKS+L NAL    V+ V++ PGTT+  +                  G  
Sbjct: 2   IKVAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGAD 61

Query: 268 LVKISDTAGIRETD-----DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------- 313
            + + DTAG+ + +      ++ +E  K    E+  AD+I+ + +               
Sbjct: 62  EIILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKLHYM 121

Query: 314 ISFPKNIDFIFIGTKSDLYS------------TYTEEYDHLISSFTGEGLEELINKIK 359
           + F      I +  K DL                 E+   L+S  T EG  EL+  + 
Sbjct: 122 LKFRYEKPIIVVINKIDLVPRERIEKLKEIVKKRLEQEPILMSLVTYEGFNELLKALA 179


>gi|195536342|ref|ZP_03079349.1| GTPase of unknown function family protein, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|194372819|gb|EDX27530.1| GTPase of unknown function family protein, putative [Francisella
           tularensis subsp. novicida FTE]
          Length = 403

 Score = 67.2 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 25/266 (9%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E + ++ +  ++ + + L   W                   + ++     ++ +
Sbjct: 84  LRAKTYEGKLQVELAQLNYQSTRLVKGWTHLERQKGGIGVRGGPGETQLEIDRRLIRQRI 143

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I      +  H    +      N   I  +G++NAGKS+LFN +   DV     +  T
Sbjct: 144 KQITQKLEKVKHHRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFAT 203

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
               L   +  +   V  SDT G  +       E    T  E   +DL++ + +   +  
Sbjct: 204 LDPTLRKVIVPKLGEVIFSDTVGFIKNLPHNLVEAFHATLEEAIESDLLVHVIDYADEDH 263

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD------------HLISSFTGE 349
            S+ +            + + I +  K D        +               +S+  G+
Sbjct: 264 KSYIEQVEKVLSEIGIADKETICVYNKIDKLENIKPSFVPLEDSDSSVVARVYLSAQNGD 323

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
           GL E    + +  +  +      +P 
Sbjct: 324 GLVEFYQALATFFNKTWINQTLDLPP 349


>gi|328957635|ref|YP_004375021.1| putative GTP-binding protein protease modulator [Carnobacterium sp.
           17-4]
 gi|328673959|gb|AEB30005.1| putative GTP-binding protein protease modulator [Carnobacterium sp.
           17-4]
          Length = 423

 Score = 67.2 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 98/255 (38%), Gaps = 24/255 (9%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           E ++Q  L+       L          L+ +   I        + +      ++ + DI 
Sbjct: 128 EGKLQVELAQLQY---LLPRLAGQGINLSRLGGGIGTRGPGETKLETDRRHIRDQITDIK 184

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
               +   H S+ +        ++I ++G++NAGKS+L N L + D     +    T D 
Sbjct: 185 RDLAETEKHRSRTREQRKESGTFQIGLMGYTNAGKSTLLNKLTQAD-TYEENQLFATLDP 243

Query: 258 LTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           LT  L L  G  V ++DT G  +       E  K T  E +  DL+L + + +++     
Sbjct: 244 LTRQLLLPSGMTVTLTDTVGFIQDLPTQLIESFKSTLEETKGVDLLLHVVDASAENMAGH 303

Query: 317 P------------KNIDFIFIGTKSDLYST--YTEEYDHLISSFT-----GEGLEELINK 357
                        ++I  I +  K DL     Y   + ++  S        + L E++NK
Sbjct: 304 EQTVVQLLKELGMESIPMITVYNKKDLVEDAFYPSLFPNVFISANDPEDINQLLSEIMNK 363

Query: 358 IKSILSNKFKKLPFS 372
           +K ++     ++  S
Sbjct: 364 MKELMVPYRIEVEVS 378


>gi|210134718|ref|YP_002301157.1| GTP-binding protein Era [Helicobacter pylori P12]
 gi|226741217|sp|B6JL99|ERA_HELP2 RecName: Full=GTPase Era
 gi|210132686|gb|ACJ07677.1| GTP-binding protein Era-like protein [Helicobacter pylori P12]
          Length = 301

 Score = 67.2 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 81/217 (37%), Gaps = 28/217 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   L+         + S ++
Sbjct: 128 THKQVLQKLQEYQQYDSQFLALVPLSAKKSQNLNALLECISKHLNPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAENLR 410
                 + +R     +L      E D  +D   E  R
Sbjct: 188 MRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEER 224


>gi|198245642|ref|YP_002218246.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197940158|gb|ACH77491.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326626051|gb|EGE32396.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 426

 Score = 67.2 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLEKVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNQIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ +G G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLMVMNKIDMLDDFEPRIDRDEENKPIRVWLSARSGVGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|124809194|ref|XP_001348513.1| conserved protein, unknown function [Plasmodium falciparum 3D7]
 gi|23497408|gb|AAN36952.1| conserved protein, unknown function [Plasmodium falciparum 3D7]
          Length = 504

 Score = 67.2 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 75/182 (41%), Gaps = 11/182 (6%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI ++G  NAGKSSL N++  K ++ V+    TT+  +      +   +   D+ GI  
Sbjct: 98  LKIALIGAPNAGKSSLLNSILNKTISAVSPKINTTKYDIKGIYSKDNVQLIFIDSPGIIP 157

Query: 280 TDDIVE--KEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337
           +    +  KE +   +   E ADL+L + +      +  P +     +     L     E
Sbjct: 158 SHKKKKFCKELVTYAWKGYEEADLVLFIADA-----VKRPTHDILNIVRM---LAPKNVE 209

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
            YD      + +  +   N+ ++I++ +    P    ++  +       + +++   +N 
Sbjct: 210 PYDSESDDESFQNNKINDNR-QNIINTESSNDPLDYMNNIDNKSEDENNISHIKYDEMNR 268

Query: 398 KD 399
           ++
Sbjct: 269 EE 270


>gi|23100099|ref|NP_693565.1| hypothetical protein OB2644 [Oceanobacillus iheyensis HTE831]
 gi|22778331|dbj|BAC14600.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 334

 Score = 67.2 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              K+ + +       ++G  N GKSS  N L   +VA V   PG T   +   +  +  
Sbjct: 16  ETSKINDQLDKEILFAMIGDVNTGKSSTINQLIGDEVAKVGAQPGETTG-IDKYIYRD-- 72

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL-------LKEINSKKEISFPK-- 318
            +  +DT G+   DDI  K   + T    + AD++L        +     +K +   +  
Sbjct: 73  KIIFADTPGL---DDINHKNSDE-TISFYQQADVVLFFLNAAGTVFSDGERKSVELIEKH 128

Query: 319 NIDFIFIGTKSDLYSTYTEEYDH------------LISSFTGEGLEELINKIKSILSNKF 366
           N + +F+  K D          +             ISS TGE + +L ++I SIL  K 
Sbjct: 129 NKNIVFVLNKIDAADDIPALVQYIKKHTKNRYTVVPISSRTGENIHQLRDEILSILKKKQ 188

Query: 367 KKLPFS 372
           K++ F+
Sbjct: 189 KEIQFA 194


>gi|303328286|ref|ZP_07358724.1| GTP-binding protein HflX [Desulfovibrio sp. 3_1_syn3]
 gi|302861616|gb|EFL84552.1| GTP-binding protein HflX [Desulfovibrio sp. 3_1_syn3]
          Length = 565

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 76/198 (38%), Gaps = 24/198 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQ--GKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDV 244
             ++    +  ++ ++     Q         R G  +  ++G++NAGKS+L N L + DV
Sbjct: 352 DRRKSRERMARIRKELDQLRRQRAFTRARRSRQGIPLAALVGYTNAGKSTLLNRLTRSDV 411

Query: 245 AIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +  +    T D  T  L       + ++DT G          +  + T  E+E ADL++
Sbjct: 412 -LAENKLFATLDPTTRRLRFPAEREIILADTVGFIRNLPKELMDAFRATLEELEAADLLV 470

Query: 304 LLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTYTE-------EYDHLIS 344
            + + +    +                 +  + +  K D  +                +S
Sbjct: 471 HVADASHPDLLQQISAVETILAEMELDRVPRLLVLNKWDQLAAPARAELADAFPLALPVS 530

Query: 345 SFTGEGLEELINKIKSIL 362
           + +G+GL  L+ ++++ L
Sbjct: 531 AKSGDGLNYLLEQLETDL 548


>gi|227889337|ref|ZP_04007142.1| GTP-binding protein HflX [Lactobacillus johnsonii ATCC 33200]
 gi|227850139|gb|EEJ60225.1| GTP-binding protein HflX [Lactobacillus johnsonii ATCC 33200]
 gi|329667973|gb|AEB93921.1| GTP-binding protein [Lactobacillus johnsonii DPC 6026]
          Length = 429

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 85/215 (39%), Gaps = 26/215 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAK- 241
             + + +   I  +K ++     Q ++    RN     ++ ++G++NAGKS+  N L   
Sbjct: 170 ELNRRTIGKQISAIKKELKDISKQEEIKSARRNNSRLPQVALVGYTNAGKSTTMNELLNV 229

Query: 242 ------KDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
                 K      ++   T D     +DL +     +SDT G          E  K T  
Sbjct: 230 FSDEASKKQVFEKNMLFATLDTSVRRIDLKDDLSFILSDTVGFISKLPHNLIESFKATLQ 289

Query: 295 EVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY---TEEY 339
           E ++ADLI+ + + +    +   K            N+  I    K+DL        E  
Sbjct: 290 EAKDADLIINVVDASDHNMVQMIKTTQKVLDELKITNVPMITAYNKADLTDRNYPQIEGN 349

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D L S+   E +++L + I   + + ++K+   +P
Sbjct: 350 DILYSAKDPESIKQLADLIVKKVFDNYEKVNLVLP 384


>gi|198283668|ref|YP_002219989.1| GTP-binding proten HflX [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665888|ref|YP_002426299.1| GTP-binding protein HflX [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248189|gb|ACH83782.1| GTP-binding proten HflX [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518101|gb|ACK78687.1| GTP-binding protein HflX [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 432

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 104/286 (36%), Gaps = 24/286 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  ++   + L   W   L   R  I        + +       E + 
Sbjct: 111 RARTHEGKLQVELAQLTRLRTRLVRGWTH-LERQRGGIGLRGPGETQLETDRRLIGERIL 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +      +++H +  +          + ++G++NAGKSSLFN L K   +   D    T
Sbjct: 170 SLRGRLIKVAAHRATQRRARQRAPLPTVALVGYTNAGKSSLFNTLTKSS-SYAADRLFAT 228

Query: 255 RDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L +EG+  + ++DT G             + T  EV  A L+L + + ++   
Sbjct: 229 LDPAIRRLQIEGHEAILLADTVGFLRDLPTDLIAAFRATLEEVNQAQLLLHVVDSSAPDR 288

Query: 314 ISF------------PKNIDFIFIGTKSDL--------YSTYTEEYDHLISSFTGEGLEE 353
            +              ++I  + +  K +L        Y +  +     +S+ +G G+ E
Sbjct: 289 DAQIAAVDAVLREIGAEDIPRLLVLNKVELTGDMPGNVYESSGKLAAVRVSAHSGIGIPE 348

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           L+  +   +     +   ++   +  L      +  +     +E+ 
Sbjct: 349 LLQAVTQRVGRSMLRADLTLMPEEGALRARIHRLASVIAERFDEQG 394


>gi|218513162|ref|ZP_03510002.1| GTP-binding protein [Rhizobium etli 8C-3]
          Length = 242

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 28/186 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G++NAGKS+LFN +    V +  D+   T D     + L  G  V +SDT G    
Sbjct: 6   VALVGYTNAGKSTLFNRITGAGV-LAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISD 64

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---------------- 324
                    + T  EV  ADLIL +++++     +   ++  I                 
Sbjct: 65  LPTHLVAAFRATLEEVLEADLILHVRDMSDPDNQAQSSDVMRILGDLGIDEAEAGKRLIE 124

Query: 325 IGTKSDLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           +  K D   +   +              +S+ +GEG++ L+++I   LS    +    +P
Sbjct: 125 VWNKIDRLESEVHDAMVQKAAGASNVVAVSAVSGEGVDTLMDEISRRLSGVMTETTIRLP 184

Query: 375 SHKRHL 380
             K  L
Sbjct: 185 VDKLAL 190


>gi|297543778|ref|YP_003676080.1| ferrous iron transport protein B [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841553|gb|ADH60069.1| ferrous iron transport protein B [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 656

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 19/165 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++    I + G++N GKS +FN L      I+ + PG T +     L  +G  +KI D  
Sbjct: 1   MKKEIVIALAGNANVGKSVIFNQLTGLTQ-IIGNWPGKTVERAEGVLRFKGRTIKIVDLP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------------ISFPKNID 321
           GI       ++E + R F+  E  D+++ + + ++ +               +    N  
Sbjct: 60  GIYSLSAYSQEEIVSREFIAFEKPDVVINVVDASNLERNLFFTVQLLELHVPMVMALNQV 119

Query: 322 FIFIGTKSDLYSTYTEEY----DHLISSFTGEGLEELINKIKSIL 362
              I    D+     EE          +  G+GLE+LI+K+  ++
Sbjct: 120 DYAIKKGIDINVKKLEELLGIPVVKTIATKGKGLEKLIDKVLEVV 164


>gi|52425574|ref|YP_088711.1| HflX protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307626|gb|AAU38126.1| HflX protein [Mannheimia succiniciproducens MBEL55E]
          Length = 448

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 64/377 (16%), Positives = 122/377 (32%), Gaps = 59/377 (15%)

Query: 78  EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA---------------FENGK 122
           ED  EF      A VN IL+ +    +   A       +A                 N  
Sbjct: 45  EDLDEFQQLAQSANVN-ILQVITAARSTPQAKYFVGQGKAEEIAQAVETHNADVVLVNHS 103

Query: 123 IDLLEAESLADLISSETEMQRRLSM-------EGMSGELSSLYGQWIDK----------L 165
           +   +A +L  L       +  L +           G+L     Q              L
Sbjct: 104 LTPAQARNLESLCQCRVVDRTGLILDIFAQRARSHEGKLQVELAQLKHLATRLVRRKTGL 163

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225
              +  +        + +      K  +  +      +    +Q +      +   I ++
Sbjct: 164 DQQKGAVGLRGPGETQLETDRRLIKVRIAQLQNRLAKVEKQRNQNRQTRQKADIPTISLV 223

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIV 284
           G++NAGKS+LFN + + +V    D    T D     L ++      ++DT G        
Sbjct: 224 GYTNAGKSTLFNRITQANV-YAADQLFATLDPTLRRLQIQDVGTTILADTVGFIRDLPHD 282

Query: 285 EKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIGTKSDLY 332
                K T  E   A L+L + +            +N+  E     ++  + +  K D  
Sbjct: 283 LVSAFKSTLQETTEAGLLLHIIDAADPRKLENIEAVNAVLEEIKAADLPTLLVYNKIDTL 342

Query: 333 STYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK---RHL 380
                  ++          +S+ + EG++ L   I+  L N+   L  ++  ++   RH 
Sbjct: 343 ENLEPHIEYDDQHIPVAVYLSAISAEGIDLLFAAIREKLKNEILHLQLNLSPNEGKIRHQ 402

Query: 381 YHLSQTVRYLEMASLNE 397
            +L   +R  E++   E
Sbjct: 403 LYLLDCIRREEISDQGE 419


>gi|156502317|ref|YP_001428382.1| protease, GTP-binding subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|156252920|gb|ABU61426.1| putative GTPase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 403

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 89/266 (33%), Gaps = 25/266 (9%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E + ++ +  ++ + + L   W                   + ++     ++ +
Sbjct: 84  LRAKTYEGKLQVELAQLNYQSTRLVKGWTHLERQKGGIGVRGGPGETQLEIDRRLIRQRI 143

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I      +  H    +      N   I  +G++NAGKS+LFN +   DV     +  T
Sbjct: 144 KQIAQKLEKVKHHRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFAT 203

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
               L   +  +   +  SDT G  +       E    T  E   +DL++ + +   +  
Sbjct: 204 LDPTLRKVIVPKLGEIIFSDTVGFIKNLPHNLVEAFHATLEEAIESDLLVHVIDYADEDH 263

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD------------HLISSFTGE 349
            S+ +            + + I +  K D        +               +S+  G+
Sbjct: 264 KSYIEQVEKVLSEIGIADKETICVYNKIDKLENIKPSFVPLEDSDSSVVSRVYLSAQNGD 323

Query: 350 GLEELINKIKSILSNKFKKLPFSIPS 375
           GL E    + +  +  +      +P 
Sbjct: 324 GLVEFYQALATFFNKTWINQTLDLPP 349


>gi|195431140|ref|XP_002063606.1| GK21326 [Drosophila willistoni]
 gi|194159691|gb|EDW74592.1| GK21326 [Drosophila willistoni]
          Length = 382

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 15/142 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +    + ++    I ++G  N GKS+  N +    V   +    TTR   +        
Sbjct: 50  EETSQTQSLQKSLHIAVIGVPNVGKSTFINNIINHRVCPTSAKVHTTRKSHSAICTTGQT 109

Query: 268 LVKISDTAGI---RETDDIVEKEGIKRTFL-EVENADLILLLKEINSK-----------K 312
            +   DT G+   RE      ++  K ++   ++NAD+I ++ + ++             
Sbjct: 110 QLVFHDTPGLVTQREIRKHNLEQSFKSSYRHAIQNADVIAVMHDASNSWTRKELHPTVLD 169

Query: 313 EISFPKNIDFIFIGTKSDLYST 334
            +    N+    I  K D+  +
Sbjct: 170 TLKAYANLPSFLILNKIDVLKS 191


>gi|157374671|ref|YP_001473271.1| ferrous iron transport protein B [Shewanella sediminis HAW-EB3]
 gi|157317045|gb|ABV36143.1| ferrous iron transport protein B [Shewanella sediminis HAW-EB3]
          Length = 764

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 25/183 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +  V +G+ NAGKS+LFNAL   +   V +  G T +  T    L G  V ++D  GI +
Sbjct: 5   FHCVTVGNPNAGKSTLFNALTGANQQ-VGNWSGVTVEKKTGLFTLNGADVYLTDLPGIYD 63

Query: 280 ------TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGT 327
                 T D    E I + +L  +  D I+ L +  + +             I  + +  
Sbjct: 64  LLPAGSTCDCSLDEQIAQQYLAEQQVDGIINLVDATNIERHLYLTVQLRELGIPMVVVLN 123

Query: 328 KSDLYSTYTEEYDHLISSFT------------GEGLEELINKIKSILSNKFKKLPFSIPS 375
           K D    +  E D    + T               +E++  ++  +L  K  + P  +  
Sbjct: 124 KIDAAKKHGIEIDTENMARTLGCPVVSVCSRDEADIEKVKAQVVDLLEGKVSEAPLVLDY 183

Query: 376 HKR 378
             R
Sbjct: 184 DPR 186


>gi|293365777|ref|ZP_06612483.1| GTP-binding protein HflX [Streptococcus oralis ATCC 35037]
 gi|307703354|ref|ZP_07640297.1| GTP-binding proten HflX [Streptococcus oralis ATCC 35037]
 gi|291315710|gb|EFE56157.1| GTP-binding protein HflX [Streptococcus oralis ATCC 35037]
 gi|307623090|gb|EFO02084.1| GTP-binding proten HflX [Streptococcus oralis ATCC 35037]
          Length = 412

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 98/266 (36%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSTFKIGLIGYTNAGKSTIMNTLTTKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + ++      
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEE-----LINKI 358
            K            +I  + +  K+DL   +T  +  + + S   E   E      + KI
Sbjct: 296 EKTVLSIMKDLDMEDIPRLTLYNKADLVEDFTPTQTPYALISAKSEDSREQLQALFLEKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I      ++PFS       L  ++
Sbjct: 356 KDIFEAFTLRVPFSKSYKIHDLESVA 381


>gi|227894075|ref|ZP_04011880.1| GTP-binding protein HflX [Lactobacillus ultunensis DSM 16047]
 gi|227864157|gb|EEJ71578.1| GTP-binding protein HflX [Lactobacillus ultunensis DSM 16047]
          Length = 421

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 97/265 (36%), Gaps = 28/265 (10%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            + T+  +                   + L   R    A+    E +     + + +   
Sbjct: 114 RARTKQAKLQVQLARLQYELPRLHPSENNLDQQRGGGYANRGAGESKL--ELNRRTIGKQ 171

Query: 196 ILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK-------DVA 245
           I  +K ++ +  SQ ++    RN     K+ ++G++NAGKS+  N L K+          
Sbjct: 172 ISAIKKELKAVASQEEIKSARRNQSRIPKVALVGYTNAGKSTTMNGLLKEFGAENRDKEV 231

Query: 246 IVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
            V ++   T D     +DL+  +   +SDT G          E  K T  E ++ADL++ 
Sbjct: 232 FVKNMLFATLDTSVRRIDLKDNFSFILSDTVGFISKLPHNLVESFKATLQETKDADLLIN 291

Query: 305 LKEINSKKEISFP------------KNIDFIFIGTKSDLYSTY---TEEYDHLISSFTGE 349
           + + +    +               K I  I    K+D         E  D L S+   +
Sbjct: 292 VVDASDPNMVQMIRTTQNVLDEIDVKGIPMITADNKADKTDRNYPQIEGSDILYSAIDPK 351

Query: 350 GLEELINKIKSILSNKFKKLPFSIP 374
            ++ L + I   +   ++KL   +P
Sbjct: 352 SIKMLADLITKRVFANYEKLELVLP 376


>gi|200387229|ref|ZP_03213841.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604327|gb|EDZ02872.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 426

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLEKVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNQIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ +G G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLMVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQSGVGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|77166047|ref|YP_344572.1| GTP-binding protein, HSR1-related [Nitrosococcus oceani ATCC 19707]
 gi|254436383|ref|ZP_05049889.1| GTP-binding proten HflX [Nitrosococcus oceani AFC27]
 gi|76884361|gb|ABA59042.1| GTP-binding protein HflX [Nitrosococcus oceani ATCC 19707]
 gi|207088073|gb|EDZ65346.1| GTP-binding proten HflX [Nitrosococcus oceani AFC27]
          Length = 382

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 74/203 (36%), Gaps = 26/203 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDV 244
             + + N I  L+  +     Q   G   R+  ++    ++G++NAGKS+LFN L     
Sbjct: 168 DRRLIGNRIRQLRKRLERVRKQRDQGRRSRHKARVPTVSLVGYTNAGKSTLFNRLT-AAR 226

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D     L L     + ++DT G          E  + T  E  +A L+L
Sbjct: 227 VLVDDRLFATLDPTLRRLRLALTQPLILADTVGFIRNLPHDLVEAFRSTLEETRDAALLL 286

Query: 304 LLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HL 342
            + + +S+                  + +  + +  K D         +           
Sbjct: 287 HVIDASSEGRCDLIAQVNKVLQTIGAEGVPQLEVYNKIDRVEGCQPRLERDASGRVHRVW 346

Query: 343 ISSFTGEGLEELINKIKSILSNK 365
           +S+ +GEGLE L   +      K
Sbjct: 347 LSATSGEGLELLRQALAEYFPAK 369


>gi|315031079|gb|EFT43011.1| GTP-binding protein HflX [Enterococcus faecalis TX0017]
          Length = 413

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLMKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 YEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|308184324|ref|YP_003928457.1| GTP-binding protein Era [Helicobacter pylori SJM180]
 gi|308060244|gb|ADO02140.1| GTP-binding protein Era [Helicobacter pylori SJM180]
          Length = 301

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 81/217 (37%), Gaps = 28/217 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMSDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQKYASQFLDLVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAENLR 410
                 + +R     +L      E D  +D   E  R
Sbjct: 188 MRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEER 224


>gi|268325133|emb|CBH38721.1| conserved hypothetical protein, GTPase of unknown function family
           [uncultured archaeon]
          Length = 187

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 21/178 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278
            KI+++GH N GKS  FN L    V   ++ PGTT D +   + + G  V++ D  G   
Sbjct: 1   MKILLMGHPNVGKSVFFNRLTGAKV-FESNYPGTTVDFMKGWMRIGGEDVELIDVPGTFS 59

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-----KNIDFIFIGTKSDLY 332
            E  D  E+  ++    E +++ ++ +L     ++ +        K    I      D+ 
Sbjct: 60  LEPKDKAEEVSVQM-LEENQDSVVVCVLDASKVERGLYLALEIIEKGYPVIIALNMWDVA 118

Query: 333 STYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                  D               ++ +GEG +EL+++I      K +++  S+ +  R
Sbjct: 119 EDKNISIDAEKLEEILGVPVVPTTAISGEGFKELVSRINDAAPVKIERIVTSVAASVR 176


>gi|268320090|ref|YP_003293746.1| hypothetical protein FI9785_1626 [Lactobacillus johnsonii FI9785]
 gi|262398465|emb|CAX67479.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
          Length = 426

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 85/215 (39%), Gaps = 26/215 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAK- 241
             + + +   I  +K ++     Q ++    RN     ++ ++G++NAGKS+  N L   
Sbjct: 167 ELNRRTIGKQISAIKKELKDISKQEEIKSARRNNSRLPQVALVGYTNAGKSTTMNELLNV 226

Query: 242 ------KDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
                 K      ++   T D     +DL +     +SDT G          E  K T  
Sbjct: 227 FSDEASKKQVFEKNMLFATLDTSVRRIDLKDDLSFILSDTVGFISKLPHNLIESFKATLQ 286

Query: 295 EVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY---TEEY 339
           E ++ADLI+ + + +    +   K            N+  I    K+DL        E  
Sbjct: 287 EAKDADLIINVVDASDHNMVQMIKTTQKVLDELKITNVPMITAYNKADLTDRNYPQIEGN 346

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D L S+   E +++L + I   + + ++K+   +P
Sbjct: 347 DILYSAKDPESIKQLADLIVKKVFDNYEKVNLVLP 381


>gi|226950509|ref|YP_002805600.1| GTP-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|226840867|gb|ACO83533.1| GTP-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 594

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 31/222 (13%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALA------ 240
             + +   I  LK ++       +     RN   K+ ++G++NAGKS+L N L       
Sbjct: 329 DKRHIKERIYDLKKELYKIKKVRETQRSKRNDIPKVSLVGYTNAGKSTLRNKLCDTGIAN 388

Query: 241 --KKDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGIRETDDIVEKEGIKRTFLEVE 297
              K+     D+   T D+ T  + L    +  ++DT G          E  K T  EV 
Sbjct: 389 AQNKEKVFEADMLFATLDITTRAISLPNNEIITLTDTVGFVRKLPHELVEAFKSTLEEVI 448

Query: 298 NADLILLLKEINS---KKEISFPK---------NIDFIFIGTKSD---------LYSTYT 336
            +DL+L + +I+S   +K+I             N   I +  K D             + 
Sbjct: 449 YSDLLLHVIDISSDTAEKQIDAVNNVLEELGTENKQIILVFNKIDKVSMERLNYFRDKFK 508

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +E    IS+  G  LE+L+  I+  L  K  ++ + IP  K+
Sbjct: 509 DEKVIEISARLGINLEDLLKLIEETLPYKLAEVEYIIPYDKQ 550


>gi|197123761|ref|YP_002135712.1| ferrous iron transporter B [Anaeromyxobacter sp. K]
 gi|196173610|gb|ACG74583.1| ferrous iron transport protein B [Anaeromyxobacter sp. K]
          Length = 740

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I G+ N+GKS+L N LA      V + PG T +      +  G  V++ D  G   
Sbjct: 21  VTIAIAGNPNSGKSTLVNGLAGS-RLQVGNWPGVTVERKEASFEHGGRRVRLVDLPGTYS 79

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
                ++E + R +L  E A +++ + +  + +
Sbjct: 80  LSPWSQEERVARDYLVEERAHVVVNVVDATNLE 112


>gi|16767608|ref|NP_463223.1| GTPase HflX [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56416153|ref|YP_153228.1| GTPase HflX [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|62182808|ref|YP_219225.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161617632|ref|YP_001591597.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167554132|ref|ZP_02347873.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167995166|ref|ZP_02576256.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231397|ref|ZP_02656455.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168239732|ref|ZP_02664790.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244860|ref|ZP_02669792.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168263286|ref|ZP_02685259.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168464754|ref|ZP_02698657.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168822511|ref|ZP_02834511.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194445750|ref|YP_002043617.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194447627|ref|YP_002048405.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194469690|ref|ZP_03075674.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194735629|ref|YP_002117303.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197250031|ref|YP_002149276.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197263462|ref|ZP_03163536.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197365079|ref|YP_002144716.1| GTPase HflX [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
 gi|204927022|ref|ZP_03218224.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205355120|ref|YP_002228921.1| GTPase HflX [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207859508|ref|YP_002246159.1| GTPase HflX [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238910520|ref|ZP_04654357.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|16422922|gb|AAL23182.1| putative GTP-ase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56130410|gb|AAV79916.1| HflX protein, putative GTP-binding protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62130441|gb|AAX68144.1| putative GTP-ase, together with HflCK possibly involved in phage
           lambda cII repressor stability [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161366996|gb|ABX70764.1| hypothetical protein SPAB_05495 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404413|gb|ACF64635.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194405931|gb|ACF66150.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194456054|gb|EDX44893.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194711131|gb|ACF90352.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195632844|gb|EDX51298.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197096556|emb|CAR62166.1| HflX protein, putative GTP-binding protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197213734|gb|ACH51131.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197241717|gb|EDY24337.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197287598|gb|EDY26990.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204323687|gb|EDZ08882.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205274901|emb|CAR39968.1| HflX protein, putative GTP-binding protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205321589|gb|EDZ09428.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205327107|gb|EDZ13871.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205334280|gb|EDZ21044.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205336311|gb|EDZ23075.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205341064|gb|EDZ27828.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205347859|gb|EDZ34490.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206711311|emb|CAR35689.1| HflX protein, putative GTP-binding protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261249453|emb|CBG27318.1| HflX protein, putative GTP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267996693|gb|ACY91578.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160851|emb|CBW20382.1| HflX protein, putative GTP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312915460|dbj|BAJ39434.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320088789|emb|CBY98547.1| tRNA modification GTPase mnmE [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222672|gb|EFX47744.1| GTP-binding protein HflX [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615524|gb|EFY12444.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618584|gb|EFY15473.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322622003|gb|EFY18853.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627727|gb|EFY24518.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322631034|gb|EFY27798.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322637747|gb|EFY34448.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642411|gb|EFY39015.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644020|gb|EFY40568.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650488|gb|EFY46896.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322653547|gb|EFY49875.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659733|gb|EFY55976.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662056|gb|EFY58272.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666195|gb|EFY62373.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672615|gb|EFY68726.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676045|gb|EFY72116.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680529|gb|EFY76567.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684577|gb|EFY80581.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322717310|gb|EFZ08881.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323132700|gb|ADX20130.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323192892|gb|EFZ78118.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197232|gb|EFZ82372.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201651|gb|EFZ86715.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206165|gb|EFZ91127.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323215547|gb|EGA00291.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219532|gb|EGA04017.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227835|gb|EGA11989.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229005|gb|EGA13134.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236383|gb|EGA20459.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323238712|gb|EGA22764.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323241837|gb|EGA25866.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248014|gb|EGA31951.1| GTPase HflX [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323254655|gb|EGA38466.1| GTPase HflX [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323258286|gb|EGA41963.1| GTPase HflX [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323263568|gb|EGA47089.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265836|gb|EGA49332.1| GTPase HflX [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323270280|gb|EGA53728.1| GTPase HflX [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
 gi|326630277|gb|EGE36620.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332991173|gb|AEF10156.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 426

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLEKVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNQIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ +G G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLMVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQSGVGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|332879823|ref|ZP_08447512.1| GTP-binding protein HflX [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682200|gb|EGJ55108.1| GTP-binding protein HflX [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 396

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 84/219 (38%), Gaps = 16/219 (7%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L     S I +    +    G   ++ ++G++N GKS+L N ++
Sbjct: 161 ETEIETDRRIVRDRIALLKKKLSAIDKQMATQRSNRGALVRVALIGYTNVGKSTLMNVIS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K +V    +    T D     + +E     +SDT G          E  K T  EV  AD
Sbjct: 221 KSEV-FAENKLFATLDTTVRKVVIENLPFLLSDTVGFIRKLPTQLIESFKSTLDEVREAD 279

Query: 301 LILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           L+L + +I+        +            +   I +  K D Y+      D L +  T 
Sbjct: 280 LLLHVVDISHPNFEEHIQSVNQILAEIHSADKPTIMVFNKIDAYTHEVIAEDDLATERTT 339

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
           +    L    ++ +    K + F    +K +L    + V
Sbjct: 340 KHF-TLEEWKQTWMQKVGKDVLFISALNKENLEEFRKVV 377


>gi|300869566|ref|ZP_07114147.1| conserved exported hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300332434|emb|CBN59345.1| conserved exported hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 524

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 103/254 (40%), Gaps = 36/254 (14%)

Query: 186 NFSSKEVLNDILFLKNDI--SSHISQGKLGE--IIRNGYKIVILGHSNAGKSSLFNALAK 241
             + + +   +  +++++   + IS+ +  E  + R   ++V+ G  +AGK+SL NAL  
Sbjct: 74  EETLRALRQQVTQIQDEVARQALISRSREIEASLSRGNVEVVVFGTGSAGKTSLINALVG 133

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           +    V    GTT    T  L L+G    + I+DT GI E   I   +  +        A
Sbjct: 134 RMAGQVGAPMGTTEVGETYILKLKGLDREILIADTPGILEAG-IAGTQREELARQLATEA 192

Query: 300 DLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTYTEEYDH---------LIS 344
           DL+L + + + +K    P           + +  K+DLY    +E            ++S
Sbjct: 193 DLLLFVLDNDLRKSEYEPLRTLAEIGKRSLVVFNKTDLYPDSDKETIIARLRQRVKGIVS 252

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           S     +     +I     ++FK  P  +P  +R    L                 G D+
Sbjct: 253 SMDVVAIAANPQEITLESGDRFKPEPDIMPLIRRMAALLRA--------------EGKDL 298

Query: 405 IAENLRLASVSLGK 418
           IA+N+ L S  LG+
Sbjct: 299 IADNILLQSQRLGE 312


>gi|238788223|ref|ZP_04632018.1| GTP-binding protein era [Yersinia frederiksenii ATCC 33641]
 gi|238723810|gb|EEQ15455.1| GTP-binding protein era [Yersinia frederiksenii ATCC 33641]
          Length = 284

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGI 289
           GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E    + +   
Sbjct: 2   GKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEEKRAINRLMN 61

Query: 290 KRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL 342
           +     + + +L++ + E     +  E+   K        +    K D  +  T+   H+
Sbjct: 62  RAASSSIGDVELVIFVVEGTNWTADDEMVVNKLRSLKCPVLLAINKVDNVTDKTKLLPHI 121

Query: 343 I--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
                          S+  G  ++ + + ++ IL       P    + +   +  S+ +R
Sbjct: 122 QFLSQQMNFLDVVPISAEKGMNVDTIASIVRKILPEAGHHFPEDYITDRSQRFMASEIIR 181

Query: 389 YLEMASLNEK 398
              M  L E+
Sbjct: 182 EKLMRFLGEE 191


>gi|167761151|ref|ZP_02433278.1| hypothetical protein CLOSCI_03556 [Clostridium scindens ATCC 35704]
 gi|167660817|gb|EDS04947.1| hypothetical protein CLOSCI_03556 [Clostridium scindens ATCC 35704]
          Length = 680

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 71/212 (33%), Gaps = 20/212 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   +  +G+ N GK++LFNA    ++  V + PG T +        +    K+ D  GI
Sbjct: 3   NIINVGFIGNPNCGKTTLFNAFTGANLK-VANWPGVTVEKKEGKAMYKNQEFKLIDLPGI 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL 331
                   +E + R  +  +  D+I+ + + +S +                +      D+
Sbjct: 62  YSLTSYTMEETVSRECIMSDEVDVIVDVIDASSLERNLYLTLQLIELGKPVVLALNMMDI 121

Query: 332 YSTYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                 E D               S+    GL  L++ +        K+ PF      RH
Sbjct: 122 VEERGMEIDLHRLPEMLGVPAIPVSARKKTGLSILMHAVAHH-KEYAKQGPFIHHHDGRH 180

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
             H         M   +  +  +DII   L  
Sbjct: 181 STHKHNHHDEYAMVYKDYIEDKIDIIMNELEE 212


>gi|257463671|ref|ZP_05628061.1| GTP-binding protein hflX [Fusobacterium sp. D12]
 gi|317061219|ref|ZP_07925704.1| GTP-binding protein hflX [Fusobacterium sp. D12]
 gi|313686895|gb|EFS23730.1| GTP-binding protein hflX [Fusobacterium sp. D12]
          Length = 594

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 94/240 (39%), Gaps = 34/240 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALA-- 240
               + +  +I FLK ++ +      L    R      K+ ++G++N GKS+L N LA  
Sbjct: 327 EIDRRRIRENISFLKKELENIKKTRSLQREKREHSNIPKLSLVGYTNVGKSTLRNLLAAN 386

Query: 241 ------KKDVAIVTDIPGTTRDVLTIDLDLEGYLVK-ISDTAGIRETDDIVEKEGIKRTF 293
                  K+     ++   T D  T  + L+   +  ++DT G          E  K T 
Sbjct: 387 YTPNSHGKEGVFAENMLFATLDTTTRTILLDDNTLLSLTDTVGFIRKLPHDLIEAFKSTL 446

Query: 294 LEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSD---------LY 332
            EV  +DLIL + + +S++ +S  +            +   I +  K D         + 
Sbjct: 447 EEVIFSDLILHIVDASSEEALSQMEAVHQVLLELNCQDKKNILVLNKCDMATPEQIQAIR 506

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH-LSQTVRYLE 391
             Y +     IS+   + +E L+ +IK  L    K   + IP H   +   L +T +  E
Sbjct: 507 EQYPDITAVEISAKEHKNIELLLEEIKKELPQNTKTCSYLIPYHDSSIVAYLHKTAKIQE 566


>gi|189468235|ref|ZP_03017020.1| hypothetical protein BACINT_04631 [Bacteroides intestinalis DSM
           17393]
 gi|189436499|gb|EDV05484.1| hypothetical protein BACINT_04631 [Bacteroides intestinalis DSM
           17393]
          Length = 419

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 16/212 (7%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q       R    +  ++G++N GKS+L N LAK +V
Sbjct: 181 EMDRRIILNRMSLLKERLAEIDKQKATQRKNRGRMIRAALVGYTNVGKSTLMNLLAKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + ++     +SDT G          +  K T  EV  ADL+L 
Sbjct: 241 -FAENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLLH 299

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           + +I+    +++I                 I +  K D Y TY E+    ++  T E L 
Sbjct: 300 IVDISHPDFEEQIEVVNKTLADIGASGKPMILVFNKIDAY-TYVEKAADDLTPRTKENL- 357

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384
            L   +K+ ++       F     K +L  L 
Sbjct: 358 TLEELMKTWMAKMEDNCLFISAREKINLEELK 389


>gi|42519726|ref|NP_965656.1| hypothetical protein LJ0599 [Lactobacillus johnsonii NCC 533]
 gi|41584015|gb|AAS09622.1| hypothetical protein LJ_0599 [Lactobacillus johnsonii NCC 533]
          Length = 426

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 85/215 (39%), Gaps = 26/215 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAK- 241
             + + +   I  +K ++     Q ++    RN     ++ ++G++NAGKS+  N L   
Sbjct: 167 ELNRRTIGKQISAIKKELKDISKQEEIKSARRNNSRLPQVALVGYTNAGKSTTMNELLNV 226

Query: 242 ------KDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
                 K      ++   T D     +DL +     +SDT G          E  K T  
Sbjct: 227 FSEEASKKQVFEKNMLFATLDTSVRRIDLKDDLSFILSDTVGFISKLPHNLIESFKATLQ 286

Query: 295 EVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY---TEEY 339
           E ++ADLI+ + + +    +   K            N+  I    K+DL        E  
Sbjct: 287 EAKDADLIINVVDASDHNMVQMIKTTQKVLDELKITNVPMITAYNKADLTDRNYPQIEGN 346

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D L S+   E +++L + I   + + ++K+   +P
Sbjct: 347 DILYSAKDPESIKQLADLIVKKVFDNYEKVNLVLP 381


>gi|112148593|gb|ABI13580.1| GTP-binding protein protease [Lactobacillus helveticus CNRZ32]
          Length = 421

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 27/232 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
             + + +   I  +K ++ +  SQ ++    RN     K+ ++G++NAGKS+  N L K+
Sbjct: 162 ELNRRTIGKQISAIKKELKAVASQEEIKSARRNQSRIPKVALVGYTNAGKSTTMNGLLKE 221

Query: 243 DVA-------IVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFL 294
             A        V ++   T D     +DL+  +   +SDT G          E  K T  
Sbjct: 222 FSAEGTNKEVFVKNMLFATLDTSVRHIDLKDNFSFILSDTVGFISKLPHNLVESFKATLQ 281

Query: 295 EVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTY---TEEY 339
           E ++ADL++ + + +    +               K I  I    K+D         E  
Sbjct: 282 ETKDADLLINVVDASDPNMVQMIRTTQNVLDEIGVKGIPMITAYNKADKTDRNYPQIEGD 341

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYL 390
           D L S+   + ++ L + I   + + +++    +P    + L +L +  + L
Sbjct: 342 DILYSAIDPKSIKMLADLITKRVFSNYEEFSLLLPLSAGKELAYLHENAQVL 393


>gi|315225011|ref|ZP_07866830.1| ferrous iron transport protein B [Capnocytophaga ochracea F0287]
 gi|314945124|gb|EFS97154.1| ferrous iron transport protein B [Capnocytophaga ochracea F0287]
          Length = 720

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 70/204 (34%), Gaps = 27/204 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y I + G+ N GKS++FNAL         + PG T               +I D  G   
Sbjct: 28  YTIALAGNPNTGKSTVFNALTGL-RQHTGNWPGKTVTRAEGSFSFHKERYRIIDLPGTYS 86

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
                E E + R F+     D+ +++ +  S+ E +    +  + I  K+ L     +E 
Sbjct: 87  LLSTSEDEEVARDFILFGKPDVTVIVVDA-SRLERNLSLALQILEITDKAVLCLNLMDEA 145

Query: 340 DHLI-------------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                                  S+ T EG+ +L+  I+ ++  KF+    +        
Sbjct: 146 RRHHINIDTRTLSRDLGIPVVATSARTKEGIADLLFAIEEVVRGKFQTKKQTFI------ 199

Query: 381 YHLSQTVRYLEMASLNEKDCGLDI 404
               Q    +    L   +   D+
Sbjct: 200 DLPKQNAEAIAELQLALSELNPDL 223


>gi|292489619|ref|YP_003532509.1| GTP-binding protein hflX [Erwinia amylovora CFBP1430]
 gi|292898161|ref|YP_003537530.1| GTP-binding protein [Erwinia amylovora ATCC 49946]
 gi|291198009|emb|CBJ45111.1| GTP-binding protein [Erwinia amylovora ATCC 49946]
 gi|291555056|emb|CBA23139.1| GTP-binding protein hflX [Erwinia amylovora CFBP1430]
          Length = 426

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 102/290 (35%), Gaps = 26/290 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIT 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +S    QG+      +   + ++G++NAGKS+LFN L   +V    D    T
Sbjct: 173 LILSRLERVSKQREQGRQARNKADVPTVSLVGYTNAGKSTLFNRLTSAEV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     +D+     V ++DT G             K T  E   A L+L + +    + 
Sbjct: 232 LDPTLRRVDVADVGEVVLADTVGFIRHLPHDLVAAFKATLQETREAALLLHIVDAADLRI 291

Query: 313 -----------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                      E     +I  + +  K D+   +    D           +S+ TGEG+ 
Sbjct: 292 EENIDAVNVVLEEIESDDIPSLLVMNKIDMLDGFVPRIDRDEENLPVRVWLSAQTGEGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
            L   +   L+ +  +    +P     L      +R +E    NE+D  L
Sbjct: 352 LLFQALTERLAGEIAQFELRLPPAAGRLRSRFYQLRAIEK-EWNEEDGSL 400


>gi|333031347|ref|ZP_08459408.1| ferrous iron transport protein B [Bacteroides coprosuis DSM 18011]
 gi|332741944|gb|EGJ72426.1| ferrous iron transport protein B [Bacteroides coprosuis DSM 18011]
          Length = 824

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           +E+E ++    +E L+ +          + +  LG+  R   K+ ++G+ N GK+SLFN 
Sbjct: 73  NEKEAIKILGDEEFLDGLHEDIKLSEEQLKRIALGK--RRTIKVALVGNPNCGKTSLFNI 130

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
            +    A V +  G T D      + EGY  K+ D  G         +E   R  L  E 
Sbjct: 131 ASGAH-AKVGNYGGVTVDAHEGYFEFEGYRFKLVDLPGTYSLSAYTPEEKYVRQHLVEET 189

Query: 299 ADLILLLKEINSKK 312
            D+I+ + + ++ +
Sbjct: 190 PDIIVNVVDASNLE 203


>gi|302346272|ref|YP_003814570.1| GTP-binding protein HflX [Prevotella melaninogenica ATCC 25845]
 gi|302150862|gb|ADK97123.1| GTP-binding protein HflX [Prevotella melaninogenica ATCC 25845]
          Length = 416

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 17/188 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  +  LK  + + I + K+ +    G   ++ ++G++N GKS+  N LAK +
Sbjct: 181 EMDRRIILQRMTLLKQRL-AEIDKQKVTQRKNRGRMIRVALVGYTNVGKSTTMNLLAKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     ++DT G          +  K T  EV  ADL+L
Sbjct: 240 V-FAENKLFATLDTTVRKVVVDNLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLL 298

Query: 304 LLKEINS---KKEISFPK---------NIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEG 350
            + +I+    +++I             +   + I  K D Y     EE D   ++     
Sbjct: 299 HVVDISHPDFEEQIQVVNQTLSELGCADKPSMIIFNKIDNYHWVEKEEDDLTPATKENIT 358

Query: 351 LEELINKI 358
           L+EL    
Sbjct: 359 LDELKKTW 366


>gi|90581376|ref|ZP_01237172.1| putative GTP-binding protein HflX [Vibrio angustum S14]
 gi|90437486|gb|EAS62681.1| putative GTP-binding protein HflX [Vibrio angustum S14]
          Length = 429

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 94/282 (33%), Gaps = 27/282 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ + 
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL   + ++    QG+          I ++G++NAGKS+LFN +    V     +  T 
Sbjct: 173 TILRRLDKVAKQRDQGRRARNRAEIPTISLVGYTNAGKSTLFNRITDAGVYAADQLFATL 232

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-- 312
              L      +     ++DT G             K T  E + ADL+L + + +  +  
Sbjct: 233 DPTLRKIAVADVGTAILADTVGFIRHLPHDLVAAFKATLKETQEADLLLHVVDASDDRFR 292

Query: 313 ----------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLEE 353
                     E      +  + I  K D         +           +S+  G+G++ 
Sbjct: 293 ENIEAVETVLEEIDAGEVPTLIIMNKIDNLEHAEPRIERDEEGVPRRVWVSAMEGQGIDL 352

Query: 354 LINKIKSILSN----KFKKLPFSIPSHKRHLYHLSQTVRYLE 391
           L   +   LS        ++P  +    R  ++    +   E
Sbjct: 353 LFQALTERLSGTMVAHTLRVPPEMIGRIRSKFYQLGCILQEE 394


>gi|212212569|ref|YP_002303505.1| GTP-binding protein [Coxiella burnetii CbuG_Q212]
 gi|212010979|gb|ACJ18360.1| GTP-binding protein [Coxiella burnetii CbuG_Q212]
          Length = 454

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 23/178 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + ++G++NAGKS+LFNA+ + +V    D    T D     L+L     + + DT G    
Sbjct: 206 VSLVGYTNAGKSTLFNAITEANV-YTADQLFATLDPTFRQLELPTLVKIILVDTVGFIRD 264

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTK 328
                    + T  E   ADL+L + + +S              E    + +  +FI  K
Sbjct: 265 LPHDLIAAFRATLEESRQADLLLHVVDAHSPDSSVMLEEVQKVLETIGAEEVPQLFIYNK 324

Query: 329 SDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            DL  +     D+          +S+ TG G++ L   +  +L +       ++ +++
Sbjct: 325 IDLLESRKPRIDYDEKGKPRRVWLSALTGVGIDLLNPAVVELLGDTILTCEVTLEANE 382


>gi|148381031|ref|YP_001255572.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153930875|ref|YP_001385402.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153935967|ref|YP_001388809.1| GTP-binding protein [Clostridium botulinum A str. Hall]
 gi|148290515|emb|CAL84643.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|152926919|gb|ABS32419.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152931881|gb|ABS37380.1| GTP-binding protein [Clostridium botulinum A str. Hall]
          Length = 594

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 31/222 (13%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALA------ 240
             + +   I  LK ++       +     RN   K+ ++G++NAGKS+L N L       
Sbjct: 329 DKRHIKERIYDLKKELYKIKKVRETQRSKRNDIPKVSLVGYTNAGKSTLRNKLCDTGIAS 388

Query: 241 --KKDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGIRETDDIVEKEGIKRTFLEVE 297
              K+     D+   T D+ T  + L    +  ++DT G          E  K T  EV 
Sbjct: 389 AQNKEKVFEADMLFATLDITTRAISLPNNEIITLTDTVGFVRKLPHELVEAFKSTLEEVI 448

Query: 298 NADLILLLKEINS---KKEISFPK---------NIDFIFIGTKSD---------LYSTYT 336
            +DL+L + +I+S   +K+I             N   I +  K D             + 
Sbjct: 449 YSDLLLHVIDISSDTAEKQIDAVNNVLEELGTENKQIILVFNKIDKVSMERLNYFRDKFK 508

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +E    IS+  G  LE+L+  I+  L  K  ++ + IP  K+
Sbjct: 509 DEKVIEISARLGINLEDLLKLIEETLPYKLAEVEYIIPYDKQ 550


>gi|57209820|emb|CAI41972.1| GTP binding protein 6 (putative) [Homo sapiens]
          Length = 286

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 98/273 (35%), Gaps = 27/273 (9%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG---KLGEII 216
                + H+   + +       E       + +      ++  +     +    +     
Sbjct: 2   NLKRDVAHLYRGVGSRYIMGSGESFMQLQQRLLREKEAKIRKALDRLRKKRHLLRRQRTR 61

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIV-TDIPGTTRDVLTIDLDLEGYLVKI-SDT 274
           R    I ++G++N GK++L  AL   D AI   D    T DV      L   +  +  DT
Sbjct: 62  REFPVISVVGYTNCGKTTLIKALTG-DAAIQPRDQLFATLDVTAHAGTLPSRMTVLYVDT 120

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------------EISFPKN 319
            G          E    T  +V ++DLIL +++++  +               ++  P  
Sbjct: 121 IGFLSQLPHGLIESFSATLEDVAHSDLILHVRDVSHPEAELQKCSVLSTLRGLQLPAPLL 180

Query: 320 IDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
              + +  K DL   Y  TE     +S+  G GL+EL  ++ + +     +   ++    
Sbjct: 181 DSMVEVHNKVDLVPGYSPTEPNVVPVSALRGHGLQELKAELDAAVLKATGRQILTL---- 236

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           R     +Q     + A++ E D   +  A ++R
Sbjct: 237 RVRLAGAQLSWLYKEATVQEVDVIPEDGAADVR 269


>gi|149192034|ref|ZP_01870261.1| predicted GTPase [Vibrio shilonii AK1]
 gi|148834135|gb|EDL51145.1| predicted GTPase [Vibrio shilonii AK1]
          Length = 429

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 91/267 (34%), Gaps = 31/267 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + + +
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRD 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   +     Q + G   RN      I ++G++NAGKS+LFN + +  V    D  
Sbjct: 170 RIKAILRRLEKVAKQREQGRRARNRAEIPTISLVGYTNAGKSTLFNRITEAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKIQLADVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASD 288

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGE 349
            +            E      +  + +  K D         +           +S+  G+
Sbjct: 289 DRFRENIQAVHDVLEEIDAHEVPSLVVMNKIDNLDGQRPRIERNDEGIPRAVWVSAMEGQ 348

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSH 376
           G+E L   +   L+++  +    IP  
Sbjct: 349 GIELLFEALTERLASQMVQYQLRIPPQ 375


>gi|323213174|gb|EFZ97976.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
          Length = 403

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 91  RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 149

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 150 QIQSRLEKVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNQIT-EARVYAADQLFAT 208

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 209 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRV 268

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ +G G+ 
Sbjct: 269 QENIEAVNTVLEEIDAHEIPTLMVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQSGVGIP 328

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 329 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 367


>gi|146283979|ref|YP_001174132.1| GTP-binding protein HflX [Pseudomonas stutzeri A1501]
 gi|145572184|gb|ABP81290.1| GTP-binding protein HflX [Pseudomonas stutzeri A1501]
          Length = 419

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 59/329 (17%), Positives = 114/329 (34%), Gaps = 29/329 (8%)

Query: 115 RRAFENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
            RA E   +D            + T E + ++ +  +    + L   W   L   +  I 
Sbjct: 80  ERALECRVLDRTGLILDIFAQRARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIG 138

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
                  + +      +  +  I      +     Q + G    +   + ++G++NAGKS
Sbjct: 139 LRGPGETQLETDRRLLRVRIRQIKQRLEKVRGQREQARRGRRRADIPSVSLVGYTNAGKS 198

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRT 292
           +LFNAL + +V    +    T D     L+LE    V ++DT G          E  + T
Sbjct: 199 TLFNALTESEV-YAANQLFATLDPTLRRLELEDVGPVILADTVGFIRHLPHKLVESFRAT 257

Query: 293 FLEVENADLILLLKEINSKKEISFPKNI------------DFIFIGTKSDLYSTYTEEYD 340
             E  NADL+L + + +  +     + +              + +  K DL      +  
Sbjct: 258 LEESSNADLLLHVIDAHEPERDQQIEQVLAVLGEIGANELPMLEVYNKLDLLEGIEPQIQ 317

Query: 341 ---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                      +S+  G GL+ L   +  +L +        +P     L      +  ++
Sbjct: 318 RDADGKPQRVWVSARDGLGLDLLRQAVAELLGDDLFVGTLCLPQRLGRLRAQFFELGAVQ 377

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKIT 420
             + +E+   L      +RL  V L ++ 
Sbjct: 378 RETHDEEGGSL----LEVRLPRVELNRLI 402


>gi|47223730|emb|CAF98500.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 359

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 15/137 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ ++G  NAGKS+L N L  + V  V+    TTR+     L      + + DT G+  
Sbjct: 19  LKVAVIGAPNAGKSTLSNQLLGRKVFAVSRKVHTTRNRALGVLTEGDTQIILLDTPGLTT 78

Query: 280 TDDIV----EKEGIKRTFLEVENADLILLLKEINSK-----------KEISFPKNIDFIF 324
              +     EK  +   +  V+ ADL++++ +++ +           K +S   +   I 
Sbjct: 79  VSKVKRHQLEKSLLVDPWNTVKEADLMVVMVDVSDRWMCGRLDMEVLKCLSQHPDTPAIL 138

Query: 325 IGTKSDLYSTYTEEYDH 341
           +  K D         D 
Sbjct: 139 VLNKVDKVKAKDRLLDI 155


>gi|300087801|ref|YP_003758323.1| GTP-binding proten HflX [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527534|gb|ADJ26002.1| GTP-binding proten HflX [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 367

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 99/260 (38%), Gaps = 37/260 (14%)

Query: 136 SSETEM---QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192
            + T+    Q  L+       L  L GQW   L  +   I        + +      ++ 
Sbjct: 110 HARTKEGRLQIELARAQYL--LPRLTGQWKH-LERLGGGIGTRGPGESQLETDRRLIQKR 166

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  I      +S H +  +    +     + ++G++N+GKSSL   L K DV +V +   
Sbjct: 167 ITTIKKDLEKVSKHRALYRKKRQMSYIPIVALVGYTNSGKSSLLKTLTKSDV-LVQNQLF 225

Query: 253 TTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS- 310
            T D  T  L L     + ++DT G          E  K T  E+++A ++L + +I+S 
Sbjct: 226 ATLDPTTRRLCLPNLTKILVTDTVGFIHKLPPTIIEAFKSTLEELQDASILLHVVDISSL 285

Query: 311 ---KKEISFPK--------NIDFIFIGTKSDLYS-----------------TYTEEYDHL 342
              ++ I+           +   I +  K DL                       E   +
Sbjct: 286 HATEQSITVENILAELGIADKPVITVYNKIDLIDYNQFLSSVDRPGTQDFLKSCPENTVM 345

Query: 343 ISSFTGEGLEELINKIKSIL 362
           +S+    GL+ L++ I+S+L
Sbjct: 346 VSAEKRLGLDRLLHNIESLL 365


>gi|257422122|ref|ZP_05599112.1| GTP-binding protein [Enterococcus faecalis X98]
 gi|257163946|gb|EEU93906.1| GTP-binding protein [Enterococcus faecalis X98]
 gi|315157157|gb|EFU01174.1| GTP-binding protein HflX [Enterococcus faecalis TX0043]
          Length = 413

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLMKELVLENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 SEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|229104931|ref|ZP_04235588.1| GTP-binding protein era [Bacillus cereus Rock3-28]
 gi|229117796|ref|ZP_04247161.1| GTP-binding protein era [Bacillus cereus Rock1-3]
 gi|228665659|gb|EEL21136.1| GTP-binding protein era [Bacillus cereus Rock1-3]
 gi|228678505|gb|EEL32725.1| GTP-binding protein era [Bacillus cereus Rock3-28]
          Length = 266

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 21/162 (12%)

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +D P TTR+ +          V   DT GI +    +    +K     ++  D++L +  
Sbjct: 2   SDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVN 61

Query: 308 INSKK--------EISFPKNIDFIFIGTKSD---------LYSTYTEEYDH----LISSF 346
                        E           +  K D         L   Y + ++      IS+ 
Sbjct: 62  ATEGFGRGEEFIIEKLQETKQPVFLVINKIDQVHPEQLLELIDQYRKLHEFAEIVPISAL 121

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            G  +E LI  IK  L    +  P +  +     + +++ +R
Sbjct: 122 DGNNVEALIGAIKKYLPEGPQYYPDNQVTDHPERFIIAELIR 163


>gi|329924530|ref|ZP_08279592.1| ribosome biogenesis GTP-binding protein YsxC [Paenibacillus sp.
           HGF5]
 gi|328940609|gb|EGG36929.1| ribosome biogenesis GTP-binding protein YsxC [Paenibacillus sp.
           HGF5]
          Length = 214

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 11/124 (8%)

Query: 222 IVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIR 278
           I + G SN GKSSL N  +++K++A  +  PG T+ +    ++ + YLV       A + 
Sbjct: 26  IALAGRSNVGKSSLINRMISRKNLARTSATPGKTQQLNYYRVNDDLYLVDFPGYGYAKVS 85

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD 330
           +T      E I+R  L  E   L+LL+ ++    SK +IS  +     N     + TK+D
Sbjct: 86  KTQRAAFGEMIERYLLSREELKLVLLIVDMRHPPSKDDISMYEWLQHYNRPVCVVATKAD 145

Query: 331 LYST 334
               
Sbjct: 146 KIPK 149


>gi|261405364|ref|YP_003241605.1| ribosome biogenesis GTP-binding protein YsxC [Paenibacillus sp.
           Y412MC10]
 gi|261281827|gb|ACX63798.1| ribosome biogenesis GTP-binding protein YsxC [Paenibacillus sp.
           Y412MC10]
          Length = 214

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 11/124 (8%)

Query: 222 IVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIR 278
           I + G SN GKSSL N  +++K++A  +  PG T+ +    ++ + YLV       A + 
Sbjct: 26  IALAGRSNVGKSSLINRMISRKNLARTSATPGKTQQLNYYRVNDDLYLVDFPGYGYAKVS 85

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD 330
           +T      E I+R  L  E   L+LL+ ++    SK +IS  +     N     + TK+D
Sbjct: 86  KTQRAAFGEMIERYLLSREELKLVLLIVDMRHPPSKDDISMYEWLQHYNRPVCVVATKAD 145

Query: 331 LYST 334
               
Sbjct: 146 KIPK 149


>gi|289577468|ref|YP_003476095.1| ferrous iron transporter B [Thermoanaerobacter italicus Ab9]
 gi|289527181|gb|ADD01533.1| ferrous iron transport protein B [Thermoanaerobacter italicus Ab9]
          Length = 657

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 19/165 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++    I + G++N GKS +FN L      I+ + PG T +     L  +G  +KI D  
Sbjct: 1   MKKEIVIALAGNANVGKSVIFNQLTGLTQ-IIGNWPGKTVERAEGVLRFKGRTIKIVDLP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------------ISFPKNID 321
           GI       ++E + R F+  E  D+++ + + ++ +               +    N  
Sbjct: 60  GIYSLSAYSQEEIVSREFIAFEKPDVVINVVDASNLERNLFFTVQLLELHVPMVMALNQV 119

Query: 322 FIFIGTKSDLYSTYTEEY----DHLISSFTGEGLEELINKIKSIL 362
              I    D+     EE          +  G+GLE+LI+K+  ++
Sbjct: 120 DYAIKKGIDINVKKLEELLGIPVVKTIATKGKGLEKLIDKVLEVV 164


>gi|226941958|ref|YP_002797032.1| ferrous iron transport protein B [Laribacter hongkongensis HLHK9]
 gi|226716885|gb|ACO76023.1| ferrous iron transport protein B [Laribacter hongkongensis HLHK9]
          Length = 764

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 23/186 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G+ N GK++LFNAL       V + PG T +       ++G    + D  G    D
Sbjct: 6   LALVGNPNCGKTTLFNALTGAHQ-RVGNWPGITVERKLGHFSVDGQPYDLVDLPGTYAID 64

Query: 282 ----DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL 331
                I E E I R +     ADL++ + + ++ +                + +    D+
Sbjct: 65  SQNAGISEDERIARDYAVSGEADLLINVVDASNLQRNLYLTLQLLELGRPMLVVLNLIDV 124

Query: 332 YSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                E+ D              +S+ +G GL  L   I    +   +       + ++ 
Sbjct: 125 VHDRGEQLDLAALESALDCPVIAVSASSGTGLSALRQAIARATARAPRPAATLGATLEQW 184

Query: 380 LYHLSQ 385
           L     
Sbjct: 185 LEQQQA 190


>gi|29655054|ref|NP_820746.1| ferrous iron transport protein B [Coxiella burnetii RSA 493]
 gi|161829845|ref|YP_001597588.1| ferrous iron transport protein B [Coxiella burnetii RSA 331]
 gi|29542323|gb|AAO91260.1| ferrous iron transport protein B [Coxiella burnetii RSA 493]
 gi|161761712|gb|ABX77354.1| ferrous iron transport protein B [Coxiella burnetii RSA 331]
          Length = 816

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 67/188 (35%), Gaps = 26/188 (13%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N + I + G+ N GK+ +FNAL       V + PG T D        +GY VK+ D  
Sbjct: 1   MDNDFIIALAGNPNCGKTVVFNALTGS-RQRVGNWPGVTVDKKYGYFQHQGYKVKVVDLP 59

Query: 276 GIRETDDIVEK----EGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFI 325
           G   T    E     E I   +L  + AD+I+ + + ++ +            NI  I  
Sbjct: 60  GTYSTSVTSEAGAIDEKIACGYLLSDEADIIVNVIDGSNLERNLYLTLQLLEMNIPTILA 119

Query: 326 GTKSDLYSTYTEEYDHLISSF------------TGEGLEELIN---KIKSILSNKFKKLP 370
               D+        D    S               +G+E L +   KIK       +  P
Sbjct: 120 VNMMDIVKQRGLVLDLKQLSKRLGCPVVGLVARQNKGIEALKDGILKIKEKADRSAQNAP 179

Query: 371 FSIPSHKR 378
            +     R
Sbjct: 180 RTSAREAR 187


>gi|167038408|ref|YP_001665986.1| ferrous iron transport protein B [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116812|ref|YP_004186971.1| ferrous iron transport protein B [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166857242|gb|ABY95650.1| ferrous iron transport protein B [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929903|gb|ADV80588.1| ferrous iron transport protein B [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 656

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 19/168 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++    I + G++N GKS +FN L      I+ + PG T +     L  +G  +KI D  
Sbjct: 1   MKKEIVIALAGNANVGKSVIFNQLTGLTQ-IIGNWPGKTVERAEGVLRFKGRTIKIVDLP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKS 329
           GI       ++E + R F+  E  D+++ + + ++ +            ++  +    + 
Sbjct: 60  GIYSLSAYSQEEIVSREFIAFEKPDVVINVVDASNLERNLFFTVQLLELHVPMVMALNQV 119

Query: 330 D------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           D                          +  G+GLEELI+K   ++ + 
Sbjct: 120 DYALKKGIDINVKRLEELLGIPVVKTIATKGKGLEELIDKALEVVDSH 167


>gi|322807381|emb|CBZ04955.1| GTP-binding protein HflX [Clostridium botulinum H04402 065]
          Length = 594

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 31/222 (13%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALA------ 240
             + +   I  LK ++       +     RN   K+ ++G++NAGKS+L N L       
Sbjct: 329 DKRHIKERIYDLKKELYKIKKVRETQRSKRNDIPKVSLVGYTNAGKSTLRNKLCDTGIAN 388

Query: 241 --KKDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGIRETDDIVEKEGIKRTFLEVE 297
              K+     D+   T D+ T  + L    +  ++DT G          E  K T  EV 
Sbjct: 389 AQNKEKVFEADMLFATLDITTRAISLPNNEIITLTDTVGFVRKLPHELVEAFKSTLEEVI 448

Query: 298 NADLILLLKEINS---KKEISFPK---------NIDFIFIGTKSD---------LYSTYT 336
            +DL+L + +I+S   +K+I             N   I +  K D             + 
Sbjct: 449 YSDLLLHVIDISSDTAEKQIDAVNNVLEELGTENKQIILVFNKIDKVSMERLNYFRDKFK 508

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +E    IS+  G  LE+L+  I+  L  K  ++ + IP  K+
Sbjct: 509 DEKVIEISARLGINLEDLLKLIEETLPYKLAEVEYIIPYDKQ 550


>gi|153941369|ref|YP_001392358.1| GTP-binding protein [Clostridium botulinum F str. Langeland]
 gi|152937265|gb|ABS42763.1| GTP-binding protein [Clostridium botulinum F str. Langeland]
 gi|295320349|gb|ADG00727.1| GTP-binding protein [Clostridium botulinum F str. 230613]
          Length = 594

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 31/222 (13%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALA------ 240
             + +   I  LK ++       +     RN   K+ ++G++NAGKS+L N L       
Sbjct: 329 DKRHIKERIYDLKKELYKIKKVRETQRSKRNDIPKVSLVGYTNAGKSTLRNKLCDTGIAN 388

Query: 241 --KKDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGIRETDDIVEKEGIKRTFLEVE 297
              K+     D+   T D+ T  + L    +  ++DT G          E  K T  EV 
Sbjct: 389 AQNKEKVFEADMLFATLDITTRAISLPNNEIITLTDTVGFVRKLPHELVEAFKSTLEEVI 448

Query: 298 NADLILLLKEINS---KKEISFPK---------NIDFIFIGTKSD---------LYSTYT 336
            +DL+L + +I+S   +K+I             N   I +  K D             + 
Sbjct: 449 YSDLLLHVIDISSDTAEKQIDAVNNVLEELGTENKQIILVFNKIDKVSMERLNYFRDKFK 508

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +E    IS+  G  LE+L+  I+  L  K  ++ + IP  K+
Sbjct: 509 DEKVIEISARLGINLEDLLKLIEETLPYKLAEVEYIIPYDKQ 550


>gi|315149289|gb|EFT93305.1| GTP-binding protein HflX [Enterococcus faecalis TX0012]
          Length = 413

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLMKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 SEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|288802876|ref|ZP_06408313.1| GTP-binding protein HflX [Prevotella melaninogenica D18]
 gi|288334693|gb|EFC73131.1| GTP-binding protein HflX [Prevotella melaninogenica D18]
          Length = 416

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 17/188 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  +  LK  + + I + K+ +    G   ++ ++G++N GKS+  N LAK +
Sbjct: 181 EMDRRIILQRMTLLKQRL-AEIDKQKVTQRKNRGRMIRVALVGYTNVGKSTTMNLLAKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + ++     ++DT G          +  K T  EV  ADL+L
Sbjct: 240 V-FAENKLFATLDTTVRKVVVDNLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLL 298

Query: 304 LLKEINS---KKEISFPK---------NIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEG 350
            + +I+    +++I             +   + I  K D Y     EE D   ++     
Sbjct: 299 HVVDISHPDFEEQIQVVNQTLSELGCADKPSMIIFNKIDNYHWVEKEEDDLTPATKENIT 358

Query: 351 LEELINKI 358
           L+EL    
Sbjct: 359 LDELKKTW 366


>gi|285017959|ref|YP_003375670.1| GTP-binding protein hflx [Xanthomonas albilineans GPE PC73]
 gi|283473177|emb|CBA15683.1| probable gtp-binding protein hflx [Xanthomonas albilineans]
          Length = 441

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 95/298 (31%), Gaps = 31/298 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W          I        + +      ++ +  +      +   
Sbjct: 126 LAQLRHMATRLVRGWTHLERQRGGSIGLRGPGETQLETDRRLLQKRVEQLQKRLEKVEVQ 185

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +Q +   +     +I ++G++NAGKS+LFNAL   + A   D    T D     + L G
Sbjct: 186 HTQMRRARVRSELPRIAVVGYTNAGKSTLFNALTGAE-AYAADQLFATLDPTVRRIALPG 244

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--- 323
               ++DT G             + T  E   AD +L + +            +D +   
Sbjct: 245 GNAMLADTVGFVRDLPHELVAAFRSTLSEAREADFLLHVVDAADPLREERIAQVDEVLHA 304

Query: 324 ---------FIGTKSDLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSI 361
                     +  K D        +D               IS+  G G + L   +   
Sbjct: 305 VGAGELPQLLVFNKIDRIEGAQARHDAQDGAPDAARRERVWISARDGRGQDLLQQVLGQR 364

Query: 362 LSNKFKKLPFSIPS---HKRHLYHLSQTVRYLEMASLNEKDCGLDI-IAENLRLASVS 415
           L  +  +    +P      R   H  Q +R  E    +     +DI I E  RLA+ +
Sbjct: 365 LGLRHVQGRLRLPPSAGRLRSQLHQLQVIRS-EQGDEDGWLLQVDIPITEAERLAATA 421


>gi|219852901|ref|YP_002467333.1| ferrous iron transport protein B [Methanosphaerula palustris E1-9c]
 gi|219547160|gb|ACL17610.1| ferrous iron transport protein B [Methanosphaerula palustris E1-9c]
          Length = 666

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++   +I + G+ N GKS++FNAL       V + PG T +  +    L  Y +++ D  
Sbjct: 1   MKKSIRIALAGNPNVGKSTIFNALTGF-RQQVGNWPGVTVEKKSGFARLGEYEIEVVDLP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKS 329
           G        E E I R ++  E  D+++ + +  + +             +  +     S
Sbjct: 60  GTYSLTAYSEDEVIARDYIIEEKPDVVVHVVDATNFERNLYLTTQLMELGVPLVIALNMS 119

Query: 330 DLYSTYTEEYDHLISSF------------TGEGLEELIN 356
           D+        D ++                GEGL+EL+ 
Sbjct: 120 DMAEKNGTAIDQVMMKKFFEIPAVRTVGSKGEGLDELLR 158


>gi|75910706|ref|YP_325002.1| small GTP-binding protein domain-containing protein [Anabaena
           variabilis ATCC 29413]
 gi|75704431|gb|ABA24107.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC
           29413]
          Length = 457

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 12/159 (7%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +K +I +      L ++  N  +I   G  + GKS++ NAL    +     + G T+   
Sbjct: 51  VKPEIEAL--NSTLNKLDSNVIRIAAFGLVSRGKSAVLNALLGSKILQTGPLNGVTQWPR 108

Query: 259 TIDLDLEGYLVK-ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK--EINSKKEIS 315
           ++     G ++  + DT G+ E       +        V  ADLIL +   +I   +  +
Sbjct: 109 SVRWQPGGKVIVELIDTPGLDEIQGESRAQM---ARDVVRQADLILFVVSGDITRTEYQA 165

Query: 316 FPK----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
             +        I +  K DLY    +   +      G G
Sbjct: 166 LLELRQAQKPLILVFNKIDLYPDTDQAAIYRNLQQLGAG 204


>gi|306829801|ref|ZP_07462988.1| GTP-binding protein HflX [Streptococcus mitis ATCC 6249]
 gi|304427812|gb|EFM30905.1| GTP-binding protein HflX [Streptococcus mitis ATCC 6249]
          Length = 412

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 100/266 (37%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNTLTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + ++      
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEE-----LINKI 358
            K            +I  + +  K+DL   +   +  + + S   +   E     L++KI
Sbjct: 296 EKTVLSIVKDLDMEDIPRLTLYNKADLVEDFMPTQTPYALISAKSKDSREQLQALLLDKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K I  +   +LPFS       L  ++
Sbjct: 356 KEIFESFTLRLPFSKSYKIHDLESVA 381


>gi|149922629|ref|ZP_01911057.1| ferrous iron transport protein B [Plesiocystis pacifica SIR-1]
 gi|149816515|gb|EDM76012.1| ferrous iron transport protein B [Plesiocystis pacifica SIR-1]
          Length = 697

 Score = 66.8 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 89/244 (36%), Gaps = 52/244 (21%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY---LVKISDTAG 276
            ++ + G+ N GK+SLFN L       V + PG T +     L +EG     V++ D  G
Sbjct: 4   LRVAVAGNPNVGKTSLFNLLTGS-RYKVGNYPGVTVETREGGLRVEGRAVEGVRLVDLPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADL-----ILLLKEINS------KKEISFPKNIDFIFI 325
                 + E E +   F  +  AD+     +LL+ +  +           F   +  + +
Sbjct: 63  TYSLTPMAEDEAV--AFRALTGADVEAPELVLLVLDATNLGRNLYLALQIFELGLPVVVV 120

Query: 326 GTKSDLYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               DL        D                + TGEG+ EL  ++KS+           +
Sbjct: 121 LNMVDLAKDAGVGVDARALEAALGLPVVETVARTGEGVPELAARLKSMAGQLELMEQRLV 180

Query: 374 PSHK----------------RHLYHLS-QTVRYLEMASLNEKD----CGLDIIAENLRLA 412
           P+ +                R  + L+ +    LE+A+ +E +     GLD   E +R A
Sbjct: 181 PAPEGGVLARCLADMGGDGPRQRWLLAGRAADRLELAAPSEAERQRVDGLD--EEAVREA 238

Query: 413 SVSL 416
              L
Sbjct: 239 MAEL 242


>gi|323467236|gb|ADX70923.1| GTP-binding protein [Lactobacillus helveticus H10]
          Length = 421

 Score = 66.4 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 27/232 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
             + + +   I  +K ++ +  SQ ++    RN     K+ ++G++NAGKS+  N L K+
Sbjct: 162 ELNRRTIGKQISAIKKELKAVASQEEIKSARRNQSYIPKVALVGYTNAGKSTTMNGLLKE 221

Query: 243 DVA-------IVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFL 294
             A        V ++   T D     +DL+  +   +SDT G          E  K T  
Sbjct: 222 FSAEGTNKEVFVKNMLFATLDTSVRRIDLKDNFSFILSDTVGFISKLPHNLVESFKATLQ 281

Query: 295 EVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTY---TEEY 339
           E ++ADL++ + + +    +               K I  I    K+D         E  
Sbjct: 282 ETKDADLLINVVDASDPNMVQMIRTTQNVLDEIGVKGIPMITAYNKADKTDRNYPQIEGD 341

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYL 390
           D L S+   + ++ L + I   + + +++    +P    + L +L +  + L
Sbjct: 342 DILYSAIDPKSIKMLADLITKRVFSNYEEFSLLLPLSAGKELAYLHENAQVL 393


>gi|307720446|ref|YP_003891586.1| ferrous iron transport protein B [Sulfurimonas autotrophica DSM
           16294]
 gi|306978539|gb|ADN08574.1| ferrous iron transport protein B [Sulfurimonas autotrophica DSM
           16294]
          Length = 713

 Score = 66.4 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 2/149 (1%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
              K   II N  K+ ++G  N GKS L N+++   +  V +  G T D   +  D + Y
Sbjct: 3   EDVKTCPIIANHIKVALVGQPNVGKSMLINSVSNAHLH-VGNFSGVTVDKTEVLFDYKNY 61

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT 327
              + D  G     D   +E + R +L  E+ D+I+ + + ++  E +     +   +  
Sbjct: 62  HFTVVDLPGTYAFTDYTIEERVTRDYLCAEDYDIIINVVD-STNLEKNLQLTAELFTMSK 120

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           K  +    ++E +        E + EL+N
Sbjct: 121 KMVIALNMSDEAEKEGIEVNAEYMSELLN 149


>gi|159026130|emb|CAO86348.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 454

 Score = 66.4 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 13/166 (7%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
              +K D+ S   +  L ++     ++   G  + GKSS+ NAL  + V     + G TR
Sbjct: 42  QAAVKQDLQSL--KSALDKLDETVIRVAAFGLVSRGKSSVVNALVGQKVLTTGPLHGVTR 99

Query: 256 DVLTIDLD--LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---- 309
              ++          +++ DT G+ E +               ++ADLIL +   +    
Sbjct: 100 WPRSVRWTPATGKIQIELIDTPGLDEIEGEARANM---AREVAKSADLILFIVAGDITRT 156

Query: 310 --SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
                E         I +  K DLY               G   +E
Sbjct: 157 EYEALEELRQAKKPIILVFNKIDLYPEADRRQIFQQLQRLGTNRDE 202


>gi|68063181|ref|XP_673600.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56491569|emb|CAI02319.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 394

 Score = 66.4 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 204 SSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
           S++++  K+ E   N    KI ++G  N+GKSSL N +  K ++ V+    TT+  +   
Sbjct: 78  SAYMNTWKIPEQPENPKFLKIALIGAPNSGKSSLLNTILNKTISSVSPKINTTKQDIKGI 137

Query: 262 LDLEGYLVKISDTAGIRETDDIVE--KEGIKRTFLEVENADLILLLKE 307
              E   +   D+ GI  +    +  KE +   +   E ADLIL + +
Sbjct: 138 YTKENVQLIFIDSPGIIPSHKKKKFCKELVNYAWKGYEEADLILFVVD 185


>gi|261839651|gb|ACX99416.1| GTP-binding protein Era [Helicobacter pylori 52]
          Length = 301

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 81/217 (37%), Gaps = 28/217 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQQYDSQFLALVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAENLR 410
                 + +R     +L      E D  +D   E  R
Sbjct: 188 MRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEER 224


>gi|225872683|ref|YP_002754140.1| putative GTP-binding protein HflX [Acidobacterium capsulatum ATCC
           51196]
 gi|225792080|gb|ACO32170.1| putative GTP-binding protein HflX [Acidobacterium capsulatum ATCC
           51196]
          Length = 432

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 89/254 (35%), Gaps = 24/254 (9%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           I +     R   ++    +L  +  +   +   +             E       + +  
Sbjct: 122 IFARHARTREGMLQVELAQLEYMLPRLTGRGREMSRLGGGIGTRGPGETQLETDRRRIQR 181

Query: 195 DILFLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  LK ++ S           R       + ++G++NAGKS+LFNAL    V + +   
Sbjct: 182 RISTLKGELESVRRIRSQQRQRREAVPVPTVALVGYTNAGKSTLFNALTGAGV-LASSRM 240

Query: 252 GTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L     V +SDT G             + T  EV+ A+++L +++ +S
Sbjct: 241 FATLDPKLRAIVLPSRRKVLLSDTVGFIRDLPPTLISSFRATLEEVQKAEVLLHVQDCSS 300

Query: 311 KKEISFPK------------NIDFIFIGTKSDLYSTYTEE-------YDHLISSFTGEGL 351
                               +   I +  K DL S   +E           IS+ TG GL
Sbjct: 301 ATREEHRAEVKHVLAELGAGDKPQIEVLNKVDLLSPEEQEGLRSGHGRPMAISARTGMGL 360

Query: 352 EELINKIKSILSNK 365
           E+L+ +I   L   
Sbjct: 361 EDLLERIDEALQAD 374


>gi|224586202|ref|YP_002640001.1| GTPase HflX [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
 gi|224470730|gb|ACN48560.1| HflX protein, putative GTP-binding protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 426

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLEKVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNQIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAVFKATLQETRQATLLLHVVDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ +G G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLMVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQSGVGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|29376669|ref|NP_815823.1| GTP-binding protein [Enterococcus faecalis V583]
 gi|227520217|ref|ZP_03950266.1| HflX subfamily GTP-binding protein [Enterococcus faecalis TX0104]
 gi|227555348|ref|ZP_03985395.1| HflX subfamily GTP-binding protein [Enterococcus faecalis HH22]
 gi|257419719|ref|ZP_05596713.1| GTP-binding protein [Enterococcus faecalis T11]
 gi|312900814|ref|ZP_07760108.1| GTP-binding protein HflX [Enterococcus faecalis TX0470]
 gi|29344133|gb|AAO81893.1| GTP-binding protein [Enterococcus faecalis V583]
 gi|227072296|gb|EEI10259.1| HflX subfamily GTP-binding protein [Enterococcus faecalis TX0104]
 gi|227175559|gb|EEI56531.1| HflX subfamily GTP-binding protein [Enterococcus faecalis HH22]
 gi|257161547|gb|EEU91507.1| GTP-binding protein [Enterococcus faecalis T11]
 gi|311291913|gb|EFQ70469.1| GTP-binding protein HflX [Enterococcus faecalis TX0470]
 gi|315161349|gb|EFU05366.1| GTP-binding protein HflX [Enterococcus faecalis TX0645]
 gi|315575151|gb|EFU87342.1| GTP-binding protein HflX [Enterococcus faecalis TX0309B]
 gi|315582578|gb|EFU94769.1| GTP-binding protein HflX [Enterococcus faecalis TX0309A]
          Length = 413

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLMKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 SEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|238796704|ref|ZP_04640210.1| hypothetical protein ymoll0001_29210 [Yersinia mollaretii ATCC
           43969]
 gi|238719435|gb|EEQ11245.1| hypothetical protein ymoll0001_29210 [Yersinia mollaretii ATCC
           43969]
          Length = 291

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 14/153 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G +  GKSSL NAL + +V  V+D+   TRDVL + L    + + + D  G+ E++
Sbjct: 39  IGIMGKTGVGKSSLCNALFQGEVTPVSDVQACTRDVLRLRLSSGDHSLILVDLPGVGESE 98

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDL 331
               E E + R    +   DLIL + + + +         + +        +F+  ++D 
Sbjct: 99  LRDSEYESLYR--RTLPELDLILWVIKADDRAFSVDECFYRRVMTGYQQRVLFVVNQADK 156

Query: 332 YSTYTEEYDHLISSFTGE--GLEELINKIKSIL 362
                E Y    +    +   +E  +  I+ + 
Sbjct: 157 IEPSHEWYVTGNAPSPHQLANIEARLESIRQLF 189


>gi|257079475|ref|ZP_05573836.1| GTP-binding protein [Enterococcus faecalis JH1]
 gi|257084758|ref|ZP_05579119.1| GTP-binding protein [Enterococcus faecalis Fly1]
 gi|294780377|ref|ZP_06745746.1| GTP-binding protein HflX [Enterococcus faecalis PC1.1]
 gi|307270211|ref|ZP_07551524.1| GTP-binding protein HflX [Enterococcus faecalis TX4248]
 gi|256987505|gb|EEU74807.1| GTP-binding protein [Enterococcus faecalis JH1]
 gi|256992788|gb|EEU80090.1| GTP-binding protein [Enterococcus faecalis Fly1]
 gi|294452641|gb|EFG21074.1| GTP-binding protein HflX [Enterococcus faecalis PC1.1]
 gi|306513427|gb|EFM82046.1| GTP-binding protein HflX [Enterococcus faecalis TX4248]
 gi|329568386|gb|EGG50195.1| GTP-binding protein HflX [Enterococcus faecalis TX1467]
          Length = 413

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLMKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 PEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|217076171|ref|YP_002333887.1| ferrous iron transport protein B [Thermosipho africanus TCF52B]
 gi|217036024|gb|ACJ74546.1| ferrous iron transport protein B [Thermosipho africanus TCF52B]
          Length = 648

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GK+S+FN L       V + PG T   +    + +G  +   D  G   
Sbjct: 3   VTVALVGNPNVGKTSIFNRLVGA-RQYVANWPGVTVSKIEGATEWKGNTLHFIDLPGTYS 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------------ISFPKNID-FI 323
                  E I R FL     ++ LL+ +  + ++               I    + D   
Sbjct: 62  LSSKSIDEKITRDFLFFSPPNVTLLIADSLNPEQSFYLLIETLEITKSVILVMNSYDEVK 121

Query: 324 FIGTKSDLYS--TYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
              TK D Y    +        S+ TGEG+ EL + I  I   K
Sbjct: 122 RQKTKIDKYELQKHFGVPVVFTSAKTGEGISELKDMIVDIAKGK 165


>gi|168179574|ref|ZP_02614238.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
 gi|182669723|gb|EDT81699.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
          Length = 594

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 31/222 (13%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALA------ 240
             + +   I  LK ++       +     RN   K+ ++G++NAGKS+L N L       
Sbjct: 329 DKRHIKERIYDLKKELYKIKKVRETQRSKRNDIPKVSLVGYTNAGKSTLRNKLCDTGIAN 388

Query: 241 --KKDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGIRETDDIVEKEGIKRTFLEVE 297
              K+     D+   T D+ T  + L    +  ++DT G          E  K T  EV 
Sbjct: 389 AQNKEKVFEADMLFATLDITTRAISLPNNEIITLTDTVGFVRKLPHELVEAFKSTLEEVI 448

Query: 298 NADLILLLKEINS---KKEISFPK---------NIDFIFIGTKSD---------LYSTYT 336
            +DL+L + +I+S   +K+I             N   I +  K D             + 
Sbjct: 449 YSDLLLHVIDISSDTAEKQIDAVNNVLEELGTENKQIILVFNKIDKVSMERLNYFRDKFK 508

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +E    IS+  G  LE+L+  I+  L  K  ++ + IP  K+
Sbjct: 509 DEKVIEISARLGINLEDLLKLIEETLPYKLAEVEYIIPYDKQ 550


>gi|157692414|ref|YP_001486876.1| HflX family GTP-binding protein [Bacillus pumilus SAFR-032]
 gi|157681172|gb|ABV62316.1| HflX family GTP-binding protein [Bacillus pumilus SAFR-032]
          Length = 420

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 118/306 (38%), Gaps = 33/306 (10%)

Query: 141 MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
            Q + ++  +SG+  SL  Q            + + D            +  +++I    
Sbjct: 129 AQLQYALPRLSGQGISLSRQGGGIGARGPGETKLETD--------RRHIRNRIHEINGQL 180

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
           + +  H ++ +        ++I I+G++NAGKS+LFN L   D +   D+   T D +T 
Sbjct: 181 STVKEHRTRYRERRKKNGVFQIAIVGYTNAGKSTLFNQLTDAD-SHEEDLLFATLDPMTR 239

Query: 261 DLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------- 312
            + L  GY V ISDT G  +          + T  EV+ AD +L + + +++        
Sbjct: 240 KMTLASGYSVLISDTVGFIQDLPTTLIAAFRSTLEEVKEADYLLHVIDSSNEDYEGHERT 299

Query: 313 -----EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                E      I  + +  K D                     EE + ++K+ +  + K
Sbjct: 300 VHELLEELEADRIPMLTVYNKEDQIRPDFIPSSKHRHLLISARREEDVKRLKADIMAELK 359

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQ 427
           +  F  P H +   +  + +  L+  +L E    L+      + A   L  ITG    EQ
Sbjct: 360 Q-NFLKPYHVKIPAYEGKLISALKSETLVE---SLEFQ----KEA--ELYDITGFSGEEQ 409

Query: 428 -LLDII 432
            +L  I
Sbjct: 410 TILGQI 415


>gi|317180293|dbj|BAJ58079.1| GTP-binding protein Era [Helicobacter pylori F32]
          Length = 301

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +    +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMFSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQQYASQFLALVPLSAKKSQNLNTLLECISQHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR 388
                 + +R
Sbjct: 188 MRDIYKEIIR 197


>gi|315639240|ref|ZP_07894402.1| ferrous iron transport protein B [Campylobacter upsaliensis JV21]
 gi|315480566|gb|EFU71208.1| ferrous iron transport protein B [Campylobacter upsaliensis JV21]
          Length = 669

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I+++G  N GKSSL NAL K ++  V + PG T +  +  +  + Y ++  D  G   
Sbjct: 4   INIILVGQPNVGKSSLINALCKSNLK-VGNFPGVTVEKASAKIVYKNYTLEFIDLPGTYA 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSD--- 330
            D   E+E I + +++ +N DLI+ + +  + K                I     SD   
Sbjct: 63  LDGYSEEEKITQNYIKTQNYDLIINILDSTNLKRNFILSTQLLECQKKMILALNMSDEAK 122

Query: 331 -----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK--LPFSIPSHKRHLYHL 383
                +     EE     S       +E +N +  ++    +    PF  P  ++    L
Sbjct: 123 KEGFSIDVKKLEELIKTPSISISSRTKENLNALLELIIQTHEAAFTPFLRPYGEQLEEEL 182

Query: 384 SQTVRYLEMASLNEK 398
           ++  + +E  +LNE 
Sbjct: 183 AKIQQDIEKLNLNEN 197


>gi|187778339|ref|ZP_02994812.1| hypothetical protein CLOSPO_01931 [Clostridium sporogenes ATCC
           15579]
 gi|187771964|gb|EDU35766.1| hypothetical protein CLOSPO_01931 [Clostridium sporogenes ATCC
           15579]
          Length = 594

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 31/222 (13%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALA------ 240
             + +   I  LK ++       +     RN   K+ ++G++NAGKS+L N L       
Sbjct: 329 DKRHIRERIYDLKKELYKIKKVRETQRSKRNDIPKVSLVGYTNAGKSTLRNKLCDMGIAS 388

Query: 241 --KKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
              K+     D+   T D  T  + L    ++ ++DT G          E  K T  EV 
Sbjct: 389 AQNKEKVFEADMLFATLDTTTRAISLLNNEIITLTDTVGFVRKLPHELVEAFKSTLEEVI 448

Query: 298 NADLILLLKEINS---KKEISFP---------KNIDFIFIGTKSD---------LYSTYT 336
            +DL+L + +I+S   +K+I            +N   I +  K D             + 
Sbjct: 449 YSDLLLHVIDISSDTAEKQIDAVDNVLEELGTENKPIILVFNKIDKVSMERLNYFRDKFK 508

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +E    IS+  G  LE+L+  I+  L  K  ++ + IP  K+
Sbjct: 509 DEKVIEISARLGINLEDLLKLIEETLPYKLAEVEYIIPYDKQ 550


>gi|83646553|ref|YP_434988.1| ferrous iron transport protein B [Hahella chejuensis KCTC 2396]
 gi|83634596|gb|ABC30563.1| ferrous iron transport protein B [Hahella chejuensis KCTC 2396]
          Length = 794

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 62/175 (35%), Gaps = 23/175 (13%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E     Y I ++G+ N GK++LFNAL       V + PG T +  +     +G   ++ D
Sbjct: 21  ERNAEKYVIAVVGNPNCGKTTLFNALTGSKQ-RVGNWPGVTVERKSGRFSFQGVDFELID 79

Query: 274 TAGIRE----TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFI 323
             G        +D+   E I R F+    ADLI+ + + ++ +                +
Sbjct: 80  LPGTYSLDVCEEDVSLDEQIARDFVAGREADLIINIVDASNLERNLYLTCQLLEMKTPLL 139

Query: 324 FIGTKSDLYSTYTEEYDH------------LISSFTGEGLEELINKIKSILSNKF 366
                 D+         H             I + +G GL +L   I      K 
Sbjct: 140 TALNMMDVAEERGHAVAHDRLASLLDCPVVPIVAASGVGLPQLKAAILDAARRKH 194


>gi|229098771|ref|ZP_04229709.1| GTP-binding protein era [Bacillus cereus Rock3-29]
 gi|228684615|gb|EEL38555.1| GTP-binding protein era [Bacillus cereus Rock3-29]
          Length = 266

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 21/162 (12%)

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +D P TTR+ +          V   DT GI +    +    +K     ++  D++L +  
Sbjct: 2   SDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVN 61

Query: 308 INSKK--------EISFPKNIDFIFIGTKSD---------LYSTYTEEYDH----LISSF 346
                        E           +  K D         L   Y + ++      IS+ 
Sbjct: 62  ATEGFGRGEEFIIEKLQETKQPVFLVINKIDQVHPEQLLELIDQYRKLHEFAEIVPISAL 121

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            G  +E LI  IK  L    +  P +  +     + +++ +R
Sbjct: 122 DGNNVEALIGAIKKYLPEGPQYYPDNQVTDHPERFIIAELIR 163


>gi|315917478|ref|ZP_07913718.1| GTP-binding protein hflX [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691353|gb|EFS28188.1| GTP-binding protein hflX [Fusobacterium gonidiaformans ATCC 25563]
          Length = 602

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 33/223 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + +  +I FLK ++ +      +    R      KI ++G++N GKS+L N LA +
Sbjct: 335 EIDRRRIRENISFLKKELENIKKTRSVQREKRENSNIPKIALVGYTNVGKSTLRNLLAAE 394

Query: 243 --------DVAIVTDIPGTTRDVLTIDLDLEGYLVK-ISDTAGIRETDDIVEKEGIKRTF 293
                   +     ++   T D  T  + L+   +  ++DT G          E  K T 
Sbjct: 395 YNPNSNTKEDVFAENMLFATLDTTTRTILLDDKRLVSVTDTVGFIRKLPHDLIEAFKSTL 454

Query: 294 LEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYS-----TYT 336
            EV  +DLIL + + +S++ +S  +            N   I +  K DL S     +  
Sbjct: 455 EEVIFSDLILHVVDSSSEEALSQMEAVYQVLEELQCQNKKNILVLNKCDLASPEQILSIR 514

Query: 337 EEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           E+Y H+    IS+   + ++ L+ +IK  L    K   + IP 
Sbjct: 515 EKYSHITAVEISAKEHKNIDVLLEEIKKELPQNTKTCMYLIPY 557


>gi|312135360|ref|YP_004002698.1| small gtp-binding protein [Caldicellulosiruptor owensensis OL]
 gi|311775411|gb|ADQ04898.1| small GTP-binding protein [Caldicellulosiruptor owensensis OL]
          Length = 609

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 21/165 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G+ N GKS +FN L  + V  V++ PGTT DV             I DT G+    
Sbjct: 21  IALVGNPNVGKSVIFNKLTGRYV-EVSNYPGTTVDVNYGFY----KNYVIVDTPGVYGIS 75

Query: 282 DIVEKEGIKR-----TFLEVENADLI-----LLLKE--INSKKEISFPKNIDFIFIGT-- 327
              ++E + R     T   +   D +     L L +  I+ +KE+    N+         
Sbjct: 76  SFNDEEIVTRDIVLNTQKIINVVDSVHLDRDLFLTQQLIDYQKEVIVVLNMVDEVEKNNI 135

Query: 328 KSDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
           K D+              S+  GEG+++L   I   L  + K  P
Sbjct: 136 KIDIEKLKENLGVEVIATSASRGEGIDKLKEAIDKNLFKRGKFTP 180


>gi|260858326|ref|YP_003232217.1| putative GTPase HflX [Escherichia coli O26:H11 str. 11368]
 gi|257756975|dbj|BAI28477.1| predicted GTPase HflX [Escherichia coli O26:H11 str. 11368]
 gi|323156010|gb|EFZ42172.1| GTP-binding proten HflX [Escherichia coli EPECa14]
          Length = 426

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTGRLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|224437865|ref|ZP_03658812.1| ferrous ion uptake system protein [Helicobacter cinaedi CCUG 18818]
 gi|313144314|ref|ZP_07806507.1| ferrous ion uptake system protein [Helicobacter cinaedi CCUG 18818]
 gi|313129345|gb|EFR46962.1| ferrous ion uptake system protein [Helicobacter cinaedi CCUG 18818]
          Length = 760

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 81/206 (39%), Gaps = 26/206 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             IV +G  N GKSSL N +    +  V +  G T +     ++ +GY+++I D  G   
Sbjct: 4   ITIVCVGQPNVGKSSLVNKICGVHLK-VGNFTGVTIEKAEARIEYKGYILRIIDLPGTYA 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFIGTKSDLYS 333
            ++   +E I + FLE +  D+IL + +  + +                      SD   
Sbjct: 63  LNEYSFEEQITKQFLETQEYDVILNVLDSTNLERCLLLTTQLMELQSKMCLALNMSDEAK 122

Query: 334 TYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
               E +              +S+F GE LE L++++  I +   +      P+ + +  
Sbjct: 123 KEGIEINSALLGEILGVECVSVSAFYGENLETLLDRLIHIANEPLE------PNKRVYAD 176

Query: 382 HLSQTVRYLEMASLNEKDCGLD-IIA 406
            L   +  +E     +    ++ ++A
Sbjct: 177 FLENEIGKIEDFLEQKHYEDIERLLA 202


>gi|212211807|ref|YP_002302743.1| ferrous iron transport protein B [Coxiella burnetii CbuG_Q212]
 gi|212010217|gb|ACJ17598.1| ferrous iron transport protein B [Coxiella burnetii CbuG_Q212]
          Length = 816

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 67/188 (35%), Gaps = 26/188 (13%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N + I + G+ N GK+ +FNAL       V + PG T D        +GY VK+ D  
Sbjct: 1   MDNDFIIALAGNPNCGKTVVFNALTGS-RQRVGNWPGVTVDKKYGYFQHQGYKVKVVDLP 59

Query: 276 GIRETDDIVEK----EGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFI 325
           G   T    E     E I   +L  + AD+I+ + + ++ +            NI  I  
Sbjct: 60  GTYSTSVTSEAGAIDEKIACGYLLSDEADIIVNVIDGSNLERNLYLTLQLLEMNIPTILA 119

Query: 326 GTKSDLYSTYTEEYDHLISSF------------TGEGLEELIN---KIKSILSNKFKKLP 370
               D+        D    S               +G+E L +   KIK       +  P
Sbjct: 120 VNMMDIVKQRGLVLDLKQLSKRLGCPVVGLVARQNKGIEALKDGILKIKEKADRSAQNAP 179

Query: 371 FSIPSHKR 378
            +     R
Sbjct: 180 RTSAREAR 187


>gi|323143020|ref|ZP_08077726.1| ferrous iron transport protein B [Succinatimonas hippei YIT 12066]
 gi|322417214|gb|EFY07842.1| ferrous iron transport protein B [Succinatimonas hippei YIT 12066]
          Length = 698

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 62/174 (35%), Gaps = 22/174 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I  +G+ N GK++LFNA    ++  V + PG T + +   +      +++ D  G   
Sbjct: 19  LTIGFIGNPNCGKTTLFNAFTGANLK-VANWPGVTVEKVEGAIHSHNRNIRLVDLPGTYS 77

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                 +E + R F+     D+I+ + + ++ +                +      D+  
Sbjct: 78  LTSYTMEETVARNFILSGEVDVIINVVDASALERSLYLTLQLLELGKPVVMALNMMDIVL 137

Query: 334 TYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
               E D               S+    GL+ L   + + + ++  K P  I  
Sbjct: 138 KRGMEIDLHRLPEMLGIPVIPVSARKRMGLDIL---LHAAIHHQGAKTPDPIIH 188


>gi|315586802|gb|ADU41183.1| GTP-binding protein Era [Helicobacter pylori 35A]
          Length = 301

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 81/217 (37%), Gaps = 28/217 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQQYASQFVDLVPLSAKKSQNLNTLLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAENLR 410
                 + +R     +L      E D  +D   E  R
Sbjct: 188 MRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEER 224


>gi|194335002|ref|YP_002016862.1| ferrous iron transport protein B [Prosthecochloris aestuarii DSM
           271]
 gi|194312820|gb|ACF47215.1| ferrous iron transport protein B [Prosthecochloris aestuarii DSM
           271]
          Length = 713

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 19/191 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + + G+ N GKSSLFNAL       V +  G T +     +D  GY ++  D  G   
Sbjct: 7   ITVALAGNPNCGKSSLFNALTGLHQK-VGNFSGVTIERHEGYVDYNGYRIRFVDLPGTYS 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------------EISFPKNIDFIFI 325
                 +E + R +L ++  D+++ + E  + +              E+    N+     
Sbjct: 66  LTAYSPEELVTRHYLTMDRPDIVVNVLEGPNLERNLLLTTQLMEMEVELLVALNMFDEVQ 125

Query: 326 GTKSDLYS----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
               ++      T    +    S+   EGLE L++ +  +     +     +        
Sbjct: 126 EQGIEIRDKQLQTLLGCHIVPTSAKKMEGLEALLDHVVRVYEGDIEIRKNKLAFRPELER 185

Query: 382 HLSQTVRYLEM 392
            + +    L++
Sbjct: 186 AIEEIAGVLDL 196


>gi|312879949|ref|ZP_07739749.1| GTP-binding proten HflX [Aminomonas paucivorans DSM 12260]
 gi|310783240|gb|EFQ23638.1| GTP-binding proten HflX [Aminomonas paucivorans DSM 12260]
          Length = 380

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 24/165 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G++N+GK++L   L+        D    T D  +  + L  G  V  +DT G    
Sbjct: 193 VALVGYTNSGKTTLLRRLSGDPKVQGADRLFATLDTTSRSVLLPSGQRVLFTDTVGFIRR 252

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTK 328
                    + T  E  +ADLIL++ +    +            E      +  + +  K
Sbjct: 253 LPPQLVAAFRATLEETRDADLILVVLDGADPQVEAHYEVVLETLEALEAAQVPRVVLLNK 312

Query: 329 SDLYSTYT-----------EEYDHLISSFTGEGLEELINKIKSIL 362
           +DL +               E     S+ TGEGLE L+  +++ L
Sbjct: 313 ADLSAAEASEDCLSLLRARGERIVSGSASTGEGLEALLEAVENRL 357


>gi|208434439|ref|YP_002266105.1| GTP-binding protein era-like protein [Helicobacter pylori G27]
 gi|226741218|sp|B5Z6P0|ERA_HELPG RecName: Full=GTPase Era
 gi|208432368|gb|ACI27239.1| GTP-binding protein era-like protein [Helicobacter pylori G27]
          Length = 301

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 81/217 (37%), Gaps = 28/217 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLNLCQKPHILALSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQKYSSQFLDLVPLSAKKSQNLNTLLECISKYLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAENLR 410
                 + +R     +L      E D  +D   E  R
Sbjct: 188 MRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEER 224


>gi|50955087|ref|YP_062375.1| GTP-binding protein Era [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71648670|sp|Q6AEC6|ERA_LEIXX RecName: Full=GTPase Era
 gi|50951569|gb|AAT89270.1| GTP binding protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 297

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
            R G+ +  +G  N GKS+L NAL  + +AI +  P TTR  +   +      + + DT 
Sbjct: 4   YRAGF-VSFVGRPNVGKSTLTNALVGEKIAITSSKPQTTRRAIRGIMHRREGQLILVDTP 62

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           G+     ++ +         + + D+I      + +
Sbjct: 63  GVHRPRTLLGERLNTLVESTLGDVDVIGFCVPADER 98


>gi|89094657|ref|ZP_01167594.1| probable GTP-binding protein [Oceanospirillum sp. MED92]
 gi|89081127|gb|EAR60362.1| probable GTP-binding protein [Oceanospirillum sp. MED92]
          Length = 418

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 92/270 (34%), Gaps = 25/270 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 99  RARTHEGKLQVELAQLDHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRARMK 157

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   +      + ++G++NAGKS+LFNAL   +V    D    T
Sbjct: 158 SIHKRLEKVRKQRDQGRRSRMRAEVPTLSLVGYTNAGKSTLFNALTTSEV-YAADQLFAT 216

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK------- 306
            D     +++E      ++DT G          E  + T  E   A L+L +        
Sbjct: 217 LDPTLRRIEVEDIGQAILADTVGFIRHLPHKLVEAFRATLQETIEATLLLHVIDSHDDDR 276

Query: 307 -----EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                E+ +         +  + +  K DL        D           +S+ +GEG +
Sbjct: 277 HDHVAEVENVLREIGADEVPVLEVYNKIDLIEGRKPRIDRDEEGNPIRVWLSAVSGEGHD 336

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
            L   +  +L++       S+  H+     
Sbjct: 337 LLFQAVNELLADDVFHDNVSLQPHEGQFRA 366


>gi|328464446|gb|EGF35844.1| GTP-binding protein [Lactobacillus helveticus MTCC 5463]
          Length = 421

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 94/232 (40%), Gaps = 27/232 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
             + + +   I  +K ++ +  SQ ++    RN     K+ ++G++NAGKS+  N L K+
Sbjct: 162 ELNRRTIGKQISAIKKELKAVASQEEIKSARRNQSRIPKVALVGYTNAGKSTTMNGLLKE 221

Query: 243 DVA-------IVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFL 294
             A        V ++   T D     +DL+  +   +SDT G          E  K T  
Sbjct: 222 FSAEGTNKEVFVKNMLFATLDTSVRRIDLKDNFSFILSDTVGFISKLPHNLVESFKATLQ 281

Query: 295 EVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYS---TYTEEY 339
           E ++ADL++ + + +    +               K I  I    K+D         E  
Sbjct: 282 ETKDADLLINVVDASDPNMVQMIRTTQNVLDEIGVKGIPMITAYNKADKTDHNYPQIEGN 341

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYL 390
           D L S+   + ++ L + I   + + +++    +P    + L +L Q  + L
Sbjct: 342 DILYSAIDPKSIKMLADLITKRVFSNYEEFSLLLPLSAGKELAYLHQNSQVL 393


>gi|323481232|gb|ADX80671.1| GTP-binding proten HflX [Enterococcus faecalis 62]
          Length = 413

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSNILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLIKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 SEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|166712832|ref|ZP_02244039.1| GTP-binding protein Era [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 279

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 77/217 (35%), Gaps = 29/217 (13%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGI 289
           GKS+L NAL    V+IV++ P TTR  L          + + DT G+ RE    + +   
Sbjct: 2   GKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKRAMNRVMN 61

Query: 290 KRTFLEVENADLILLLKEI--------------NSKKEISFPKNIDFIFIGTKSDLYSTY 335
           +     +E  D  +L+ E               +  +            +  K+ L    
Sbjct: 62  RAARGSLEGVDAAVLVIEAGRWDEEDTLAFGVLSDAEVPVVLVVNKVDRLKDKTALLPFL 121

Query: 336 TE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            +          H +S+   +GLE L+  +  ++            + +   +   + VR
Sbjct: 122 AQVSEGRTFAAVHPVSALKRKGLEALVGDLLKLVPEAEAMFGEDEITDRSQRFLAGELVR 181

Query: 389 YLEMASLNEK-----DCGLDIIAENLRLASVSLGKIT 420
              M  L E+        ++  AE+   A + +G + 
Sbjct: 182 EQLMRQLGEELPYATTVEIERFAED--GALLRIGAVI 216


>gi|257082143|ref|ZP_05576504.1| GTP-binding protein [Enterococcus faecalis E1Sol]
 gi|256990173|gb|EEU77475.1| GTP-binding protein [Enterococcus faecalis E1Sol]
          Length = 413

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLMKELELENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 PEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|313884686|ref|ZP_07818442.1| GTP-binding protein HflX [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620054|gb|EFR31487.1| GTP-binding protein HflX [Eremococcus coleocola ACS-139-V-Col8]
          Length = 409

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 85/218 (38%), Gaps = 21/218 (9%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + +   +L +K +++   S+ +     R     + + ++G++NAGKS+L + L + + 
Sbjct: 169 DRRHIRQRMLTIKRELAKVESKRQQTRQRRRQGKEFNLGLVGYTNAGKSTLLSQLTETET 228

Query: 245 AIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            I   +   T D LT  L L G     I+DT G  E       +  K T  E+ + DL+L
Sbjct: 229 FIKDQVFA-TLDPLTRKLSLHGNDRFTITDTVGFIEDLPQELVQSFKSTLEEIRDVDLLL 287

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYS---TYTEEYDHLISSFTG 348
            + + +    +   +            +I  + +  K D        T   + ++S+   
Sbjct: 288 HVVDGSDPARVYHEQTVVDLLRELDMLDIPTLTVYNKKDQMPSDFQATLFPNVILSALDL 347

Query: 349 EGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQ 385
             ++ L  +I        +     I     + +Y L Q
Sbjct: 348 SDIKALKEEIWRQSMKLAQAFETYIDADQAQQIYALKQ 385


>gi|256853613|ref|ZP_05558978.1| GTP-binding protein [Enterococcus faecalis T8]
 gi|307295626|ref|ZP_07575461.1| GTP-binding protein HflX [Enterococcus faecalis TX0411]
 gi|256710556|gb|EEU25599.1| GTP-binding protein [Enterococcus faecalis T8]
 gi|306496338|gb|EFM65915.1| GTP-binding protein HflX [Enterococcus faecalis TX0411]
 gi|315028618|gb|EFT40550.1| GTP-binding protein HflX [Enterococcus faecalis TX4000]
          Length = 413

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLMKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 SEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|256762968|ref|ZP_05503548.1| GTP-binding protein [Enterococcus faecalis T3]
 gi|257090431|ref|ZP_05584792.1| GTP-binding protein [Enterococcus faecalis CH188]
 gi|312902875|ref|ZP_07762079.1| GTP-binding protein HflX [Enterococcus faecalis TX0635]
 gi|256684219|gb|EEU23914.1| GTP-binding protein [Enterococcus faecalis T3]
 gi|256999243|gb|EEU85763.1| GTP-binding protein [Enterococcus faecalis CH188]
 gi|310633929|gb|EFQ17212.1| GTP-binding protein HflX [Enterococcus faecalis TX0635]
 gi|315578203|gb|EFU90394.1| GTP-binding protein HflX [Enterococcus faecalis TX0630]
          Length = 413

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLMKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 SEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|209696182|ref|YP_002264112.1| putative GTPase HflX [Aliivibrio salmonicida LFI1238]
 gi|208010135|emb|CAQ80460.1| HflX protein, putative GTP-binding protein [Aliivibrio salmonicida
           LFI1238]
          Length = 439

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 86/252 (34%), Gaps = 23/252 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ + 
Sbjct: 114 RARTYEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGPGETQLESDRRLLRDRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      ++    QG+          I ++G++NAGKS+LFN +    V     +  T 
Sbjct: 173 AIQRRLAKVAKQREQGRRARYRAEIPTISLVGYTNAGKSTLFNRITDAGVYAADQLFATL 232

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-- 312
              L      +     ++DT G             K T  E + A+++L + + + ++  
Sbjct: 233 DPTLRKIDVTDVGTAILADTVGFIRHLPHDLVAAFKATLQETQEANILLHVVDASDERFR 292

Query: 313 ----------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLEE 353
                     E      + ++ +  K D         D           +S+  GEG++ 
Sbjct: 293 ENIEAVDIVLEEIDANEVPYLLVMNKIDDLEDQQPRIDRDEEGVPRCVWVSAMEGEGIDL 352

Query: 354 LINKIKSILSNK 365
           L   +   L+ +
Sbjct: 353 LFQALTERLAGQ 364


>gi|315143369|gb|EFT87385.1| GTP-binding protein HflX [Enterococcus faecalis TX2141]
          Length = 413

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLIKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 SEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|257466321|ref|ZP_05630632.1| GTP-binding protein hflX [Fusobacterium gonidiaformans ATCC 25563]
          Length = 594

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 33/223 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + +  +I FLK ++ +      +    R      KI ++G++N GKS+L N LA +
Sbjct: 327 EIDRRRIRENISFLKKELENIKKTRSVQREKRENSNIPKIALVGYTNVGKSTLRNLLAAE 386

Query: 243 --------DVAIVTDIPGTTRDVLTIDLDLEGYLVK-ISDTAGIRETDDIVEKEGIKRTF 293
                   +     ++   T D  T  + L+   +  ++DT G          E  K T 
Sbjct: 387 YNPNSNTKEDVFAENMLFATLDTTTRTILLDDKRLVSVTDTVGFIRKLPHDLIEAFKSTL 446

Query: 294 LEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYS-----TYT 336
            EV  +DLIL + + +S++ +S  +            N   I +  K DL S     +  
Sbjct: 447 EEVIFSDLILHVVDSSSEEALSQMEAVYQVLEELQCQNKKNILVLNKCDLASPEQILSIR 506

Query: 337 EEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           E+Y H+    IS+   + ++ L+ +IK  L    K   + IP 
Sbjct: 507 EKYSHITAVEISAKEHKNIDVLLEEIKKELPQNTKTCMYLIPY 549


>gi|228474990|ref|ZP_04059718.1| GTP-binding protein HflX [Staphylococcus hominis SK119]
 gi|314936533|ref|ZP_07843880.1| GTP-binding protein HflX [Staphylococcus hominis subsp. hominis
           C80]
 gi|228270975|gb|EEK12363.1| GTP-binding protein HflX [Staphylococcus hominis SK119]
 gi|313655152|gb|EFS18897.1| GTP-binding protein HflX [Staphylococcus hominis subsp. hominis
           C80]
          Length = 412

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 17/248 (6%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + +     ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSREGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        ++I ++G++NAGKSS FN LA +      D+   
Sbjct: 180 NEIKHQLKTVVEHRERYRNQREQNQVFQIALIGYTNAGKSSWFNVLANET-TFEKDLLFA 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T  + +  G+ + ISDT G  +          K T  E ++A+L+L + + +  +
Sbjct: 239 TLDPKTRQIQINNGFNLIISDTVGFIQKLPTTLVAAFKSTLEEAKSANLLLHVVDASHSE 298

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIK 359
                       +     ++    I  K D  S  T+       S F      E   K+K
Sbjct: 299 YRAQYDTVNQLVKDLDMDDLPQAIIFNKKDQCSEETDVPVSDHPSVFVSSRNSEDKLKVK 358

Query: 360 SILSNKFK 367
            +L ++ K
Sbjct: 359 QLLFDQIK 366


>gi|289522953|ref|ZP_06439807.1| GTP-binding protein HflX [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503496|gb|EFD24660.1| GTP-binding protein HflX [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 381

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 110/325 (33%), Gaps = 43/325 (13%)

Query: 70  PSPESFTGE-DSAE----FHVHGGIAVV--NGILEELAKMPNLRLANPGEFSRRAFENGK 122
           P P +F G+    E     ++ G   VV  + +L    ++ NLR     E   R F   K
Sbjct: 51  PDPATFLGKGKVLEARELINLLGVNIVVCNDSLLS--TQLHNLRSLLGVEVWDRPFVIMK 108

Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182
           I    A S      +E ++Q  L+M         L      +++     I        E 
Sbjct: 109 IFESRAHS------AEAKLQVELAMCKYE---IPLLKGLGKQMSQTGGGIGTRGPGETEF 159

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +      +  +  +      +       +      N   + I+G++N+GKS+L  AL+  
Sbjct: 160 ERHRRKLERKVVSLQRKLEQVRKRRCNSRKRRKRSNISTVAIVGYTNSGKSTLLRALSHD 219

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           D     D    T D     + L  G  V  +DT G      +      + T  EV  A+L
Sbjct: 220 DEIYCADKLFATLDPKVRRVKLPGGKHVLFADTVGFIRKLPVELVAAFRATLEEVNEANL 279

Query: 302 ILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEEY---------- 339
           +L++ +   K  +                +I  I +  K D+      +           
Sbjct: 280 LLVVIDPLDKDPLESLTVVEETLKQIGAASIPRIIVVNKIDMIEKDQLQSLLERLSLPSG 339

Query: 340 --DHLISSFTGEGLEELINKIKSIL 362
                +S+     +  L+ +I+S L
Sbjct: 340 FEAVPVSALKNINISTLLKRIESSL 364


>gi|161508009|ref|YP_001577974.1| GTP-binding protein [Lactobacillus helveticus DPC 4571]
 gi|160348998|gb|ABX27672.1| GTP-binding protein [Lactobacillus helveticus DPC 4571]
          Length = 421

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 27/232 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
             + + +   I  +K ++ +  SQ ++    RN     K+ ++G++NAGKS+  N L K+
Sbjct: 162 ELNRRTIGKQISAIKKELKAVASQEEIKSARRNQSRIPKVALVGYTNAGKSTTMNGLLKE 221

Query: 243 DVA-------IVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFL 294
             A        V ++   T D     +DL+  +   +SDT G          E  K T  
Sbjct: 222 FSAEGTNKEVFVKNMLFATLDTSVRRIDLKDNFSFILSDTVGFISKLPHNLVESFKATLQ 281

Query: 295 EVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTY---TEEY 339
           E ++ADL++ + + +    +               K I  I    K+D         E  
Sbjct: 282 ETKDADLLINVVDASDPNMVQMIRTTQNVLDEIGVKGIPMITAYNKADKTDRNYPQIEGD 341

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYL 390
           D L S+   + ++ L + I   + + +++    +P    + L +L +  + L
Sbjct: 342 DILYSAIDPKSIKMLADLITKRVFSNYEEFSLLLPLSAGKELAYLHENAQVL 393


>gi|149908098|ref|ZP_01896766.1| putative GTP-binding protein HflX [Moritella sp. PE36]
 gi|149809104|gb|EDM69035.1| putative GTP-binding protein HflX [Moritella sp. PE36]
          Length = 447

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 4/203 (1%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFN 237
           S  E V   S + V   I  L+ +++    + +     R     + ++G++NAGKSSL  
Sbjct: 183 SISETVFEISRRRVRTKIAELRRELTKVQREMQGRSSGRIEQLTVALVGYTNAGKSSLMR 242

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEV 296
           AL   +V +V D    T D     L       + ISDT G  +            T  E 
Sbjct: 243 ALTGSEV-LVEDKLFATLDTTVRTLQPPTKPRILISDTVGFIQKLPHDLVASFHSTLEEA 301

Query: 297 ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356
           +NADL+L + + + +  IS    +D +      DL +           S   + L+ L  
Sbjct: 302 KNADLLLYVVDASDENFISQLAIVDHVLGQLDIDLNNKVLLLNKVDCLSEEQQ-LDLLER 360

Query: 357 KIKSILSNKFKKLPFSIPSHKRH 379
              ++  +   K   +    +  
Sbjct: 361 YPDALQISAHDKADVAFVHREIQ 383


>gi|29840032|ref|NP_829138.1| GTP-binding protein HflX, putative [Chlamydophila caviae GPIC]
 gi|29834379|gb|AAP05016.1| GTP-binding protein HflX, putative [Chlamydophila caviae GPIC]
          Length = 458

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 76/229 (33%), Gaps = 22/229 (9%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
             K            +  ++ ++     +E ++ +      +     + +  +  R    
Sbjct: 170 RQKSGGGSGGGFVKGEGEKQIELDRRMIRERIHKLTSDLKSVEKQRKERRKAKERRGIPS 229

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
             ++G++N+GKS+L N L   +     D    T D  T    L  G  V ++DT G    
Sbjct: 230 FALIGYTNSGKSTLLNFLTSAE-TYAEDKLFATLDPKTRRCILPCGQRVLVTDTVGFIRK 288

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGTK 328
                    K T     + D++L + + +                    ++   + +  K
Sbjct: 289 LPHTLVAAFKSTLEAALHEDVLLHVVDASHPLAFEHIETTKAILQELGIEHPKIVTVLNK 348

Query: 329 SDLYS--------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
            D                    +S+ TGEG++ L+  +  +++    ++
Sbjct: 349 IDALPDSKASVKLRLLSPRAVPVSAKTGEGIQNLLEAMTEMVTEGCPEV 397


>gi|320101447|ref|YP_004177039.1| GTP-binding proten HflX [Desulfurococcus mucosus DSM 2162]
 gi|319753799|gb|ADV65557.1| GTP-binding proten HflX [Desulfurococcus mucosus DSM 2162]
          Length = 351

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 68/201 (33%), Gaps = 30/201 (14%)

Query: 194 NDILFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
                ++ ++     I   +  + I +G   + I G++ AGK+SLFNAL       V   
Sbjct: 150 RKEARVRRELEELRRIRGVRRKQRIESGLPHVAITGYTCAGKTSLFNALTGLGK-PVGPE 208

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           P TT    +  +        ++DT G          E    T  E+ +AD+++ + + + 
Sbjct: 209 PFTTLAPKSSRVAYRDVCFILTDTVGFIRDLPPEIIEAFYATLEEISSADVLVNVVDASK 268

Query: 311 KKEISFPK--------------NIDFIFIGTKSDLYSTYT------------EEYDHLIS 344
             E    +                  I    K DL   YT             E    +S
Sbjct: 269 PLERIRVELETTRGVFSKIGVHGKPVIVALNKVDLLGDYTAKVRDVEGLLAGNEELIPVS 328

Query: 345 SFTGEGLEELINKIKSILSNK 365
           S     LE L+  +  +L   
Sbjct: 329 STMRFNLELLMEALYRVLRGG 349


>gi|307287355|ref|ZP_07567416.1| GTP-binding protein HflX [Enterococcus faecalis TX0109]
 gi|306501596|gb|EFM70891.1| GTP-binding protein HflX [Enterococcus faecalis TX0109]
 gi|315164698|gb|EFU08715.1| GTP-binding protein HflX [Enterococcus faecalis TX1302]
          Length = 413

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLMKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 PEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|295113337|emb|CBL31974.1| GTP-binding protein HflX [Enterococcus sp. 7L76]
          Length = 413

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRRKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLIKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 PEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|317181837|dbj|BAJ59621.1| GTP-binding protein Era [Helicobacter pylori F57]
          Length = 301

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLYQKPHILALSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQQYASQFLALVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR 388
                 + +R
Sbjct: 188 MRDIYKEIIR 197


>gi|312173797|emb|CBX82051.1| GTP-binding protein hflX [Erwinia amylovora ATCC BAA-2158]
          Length = 426

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 103/291 (35%), Gaps = 28/291 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIT 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +S    QG+      +   + ++G++NAGKS+LFN L   +V    D    T
Sbjct: 173 LILSRLERVSKQREQGRQARNKADVPTVSLVGYTNAGKSTLFNRLTSAEV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--- 310
            D     +D+     V ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRVDVADVGEVVLADTVGFIRHLPHDLVAAFKATLQETREAALLLHIVDAADLRI 291

Query: 311 ----------KKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                      KEI    +I  + +  K D+   +    D           +S+ TGEG+
Sbjct: 292 EENIDAVNVVLKEIE-SDDIPSLLVMNKIDMLDGFVPRIDRDEENLPVRVWLSAQTGEGI 350

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
             L   +   L+ +  +    +P     L      +R +E    NE+D  L
Sbjct: 351 PLLFQALTERLAGEIAQFELRLPPAAGRLRSRFYQLRAIEK-EWNEEDGSL 400


>gi|54310429|ref|YP_131449.1| putative GTPase HflX [Photobacterium profundum SS9]
 gi|46914870|emb|CAG21647.1| putative GTP-binding protein HflX [Photobacterium profundum SS9]
          Length = 429

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 91/263 (34%), Gaps = 25/263 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ + 
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL   + +S    QG+          I ++G++NAGKS+LFN +    V  V D    T
Sbjct: 173 TILRRLDKVSKQREQGRRARNRAEIPTISLVGYTNAGKSTLFNRITDAGV-YVADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     +D+       ++DT G             K T  E + A L+L + + + ++ 
Sbjct: 232 LDPTLRKIDVADVGTAILADTVGFIRHLPHDLVAAFKATLKETQEATLLLHVVDASDERF 291

Query: 313 -----------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                      +     ++  + +  K D         +           +S+  G G++
Sbjct: 292 RENMDAVHLVLDEIDAGDVPRLIVMNKIDCLDGAEPRIERDEDGLPRCVWVSAMEGIGID 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS 375
            L   +   LS    K    +P 
Sbjct: 352 LLFQALTERLSGTMIKHTLRLPP 374


>gi|67922903|ref|ZP_00516400.1| Small GTP-binding protein domain [Crocosphaera watsonii WH 8501]
 gi|67855253|gb|EAM50515.1| Small GTP-binding protein domain [Crocosphaera watsonii WH 8501]
          Length = 208

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 2/100 (2%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K  E+I  G  I ++G  N GKS LFN L       V++ PGTT +     + +    + 
Sbjct: 32  KSPEVISEG-TIALVGSPNVGKSLLFNVLTGG-YTTVSNYPGTTVEASRNYIKIASKTIT 89

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
           I DT G+     + E+E   R  L  E  DL++ + +  S
Sbjct: 90  IIDTPGMYSLIPMTEEERFSRELLFREPLDLVVHVIDAKS 129


>gi|223983894|ref|ZP_03634054.1| hypothetical protein HOLDEFILI_01335 [Holdemania filiformis DSM
           12042]
 gi|223964086|gb|EEF68438.1| hypothetical protein HOLDEFILI_01335 [Holdemania filiformis DSM
           12042]
          Length = 664

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 28/224 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +K+ + G+ N+GK++LFN L       V + PG T +       +E + + + D  GI  
Sbjct: 3   FKVALAGNPNSGKTTLFNRLTGSKQ-HVGNWPGVTIEKKEGSFQIEEHEITLVDLPGIYS 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNIDFIFI---- 325
                 +E + R F+  E+ DLIL + +              KE+  P  I    +    
Sbjct: 62  MSVYSMEEIVARDFIMDEHPDLILNIVDGTNIERNLYLSLQLKELGIPMVIAVNMLDELK 121

Query: 326 --GTKSDLY--STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
             G   DL   S   +     IS+  G G+ ELI+++     +       +  +  + + 
Sbjct: 122 GKGITIDLKQLSALLDTPVVAISAKNGSGMAELIHELVHNTHSSVLDYDPATETILKQIS 181

Query: 382 HLSQTVRYLE------MASLNEKDCGLDIIAENLRLASVSLGKI 419
            + +  ++           + E D   + I  +LR+++  L ++
Sbjct: 182 VIREACQHDHVHDKFYAMKMLEND---EAIVRDLRMSNAQLDEL 222


>gi|258406403|ref|YP_003199145.1| GTP-binding proten HflX [Desulfohalobium retbaense DSM 5692]
 gi|257798630|gb|ACV69567.1| GTP-binding proten HflX [Desulfohalobium retbaense DSM 5692]
          Length = 549

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 82/237 (34%), Gaps = 22/237 (9%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           M  +   L  L GQ    L+ +   I        + ++     +E +  I    + +  H
Sbjct: 314 MAQLKYTLPRLVGQNR-ALSRLAGGIGGRGPGETKLELDRRKVRERITRIRKELDKVRKH 372

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE- 265
            +  +          + ++G++NAGKS+L N +    V +  D    T D  +  +    
Sbjct: 373 RAHTRSRRSDAGVPIVALVGYTNAGKSTLLNTITHSQV-VAEDKLFATLDPTSRRIRFPQ 431

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------- 316
              V ++DT G         +E    T  E+E AD+++ + +    +             
Sbjct: 432 DREVVLTDTVGFIRELPEDLREAFLATLEELEEADVLIQVADAGHPELEEQVAAVDAILQ 491

Query: 317 ---PKNIDFIFIGTKSDLYSTYTEE-------YDHLISSFTGEGLEELINKIKSILS 363
               ++I  +    K D       +       +    ++    GLE+L+  I   L 
Sbjct: 492 DMGLEDIPRLLALNKWDTLEPEARQRVLNIFPHGLPTTALDKGGLEDLVQAILKRLP 548


>gi|154705736|ref|YP_001423663.1| ferrous iron transport protein B [Coxiella burnetii Dugway
           5J108-111]
 gi|154355022|gb|ABS76484.1| ferrous iron transport protein B [Coxiella burnetii Dugway
           5J108-111]
          Length = 816

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 67/188 (35%), Gaps = 26/188 (13%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N + I + G+ N GK+ +FNAL       V + PG T D        +GY VK+ D  
Sbjct: 1   MDNDFIIALAGNPNCGKTVVFNALTGS-RQRVGNWPGVTVDKKYGYFQHQGYKVKVVDLP 59

Query: 276 GIRETDDIVEK----EGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFI 325
           G   T    E     E I   +L  + AD+I+ + + ++ +            NI  I  
Sbjct: 60  GTYSTSVTSEAGAIDEKIACGYLLSDEADIIVNVIDGSNLERNLYLTLQLLEMNIPTILA 119

Query: 326 GTKSDLYSTYTEEYDHLISSF------------TGEGLEELIN---KIKSILSNKFKKLP 370
               D+        D    S               +G+E L +   KIK       +  P
Sbjct: 120 VNMMDIVKQRGLVLDLKQLSKRLGCPVVGLVARQNKGIEALKDGILKIKEKADRSAQNAP 179

Query: 371 FSIPSHKR 378
            +     R
Sbjct: 180 RTSAREAR 187


>gi|332706767|ref|ZP_08426828.1| ferrous iron transporter FeoB [Lyngbya majuscula 3L]
 gi|332354651|gb|EGJ34130.1| ferrous iron transporter FeoB [Lyngbya majuscula 3L]
          Length = 617

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 10/172 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  N GKS+ FN +     A V + PG T D+L  ++ L G   +  D  GI + 
Sbjct: 20  RVALLGMPNTGKSTFFNRITGTS-AHVGNWPGITVDLLQANVQLNGEPTEFVDLPGIYDL 78

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
           +   + E I +TFLE    DL +++   +   ++I     +  + +     L     +E 
Sbjct: 79  NGFSDDEKIVQTFLENFAVDLFIIVLNASQIDRQIRLALQVKALGLPAVVML--NMADEA 136

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                    E L + ++    ++S K+         + R    +S+T+   E
Sbjct: 137 KQYGVKINTEKLSDNLDMPVFLISAKYGDG------YMRAYLEISKTLNAQE 182


>gi|308182671|ref|YP_003926798.1| GTP-binding protein Era [Helicobacter pylori PeCan4]
 gi|308064856|gb|ADO06748.1| GTP-binding protein Era [Helicobacter pylori PeCan4]
          Length = 301

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 81/217 (37%), Gaps = 28/217 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQQYASQFVDLVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAENLR 410
                 + +R     +L      E D  +D   E  R
Sbjct: 188 MRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEER 224


>gi|15640375|ref|NP_230002.1| putative GTPase HflX [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121729697|ref|ZP_01682139.1| GTP-binding protein HflX [Vibrio cholerae V52]
 gi|227080560|ref|YP_002809111.1| GTP-binding protein HflX [Vibrio cholerae M66-2]
 gi|229506856|ref|ZP_04396364.1| GTP-binding protein HflX [Vibrio cholerae BX 330286]
 gi|229508660|ref|ZP_04398154.1| GTP-binding protein HflX [Vibrio cholerae B33]
 gi|229516042|ref|ZP_04405493.1| GTP-binding protein HflX [Vibrio cholerae RC9]
 gi|229606370|ref|YP_002877018.1| GTPase HflX [Vibrio cholerae MJ-1236]
 gi|254851659|ref|ZP_05241009.1| GTP-binding protein HflX [Vibrio cholerae MO10]
 gi|255747148|ref|ZP_05421091.1| GTP-binding protein HflX [Vibrio cholera CIRS 101]
 gi|262147188|ref|ZP_06027993.1| GTP-binding protein HflX [Vibrio cholerae INDRE 91/1]
 gi|298501248|ref|ZP_07011046.1| GTP-binding protein HflX [Vibrio cholerae MAK 757]
 gi|9654764|gb|AAF93521.1| GTP-binding protein HflX [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121628548|gb|EAX61030.1| GTP-binding protein HflX [Vibrio cholerae V52]
 gi|227008448|gb|ACP04660.1| GTP-binding protein HflX [Vibrio cholerae M66-2]
 gi|229346945|gb|EEO11912.1| GTP-binding protein HflX [Vibrio cholerae RC9]
 gi|229354295|gb|EEO19224.1| GTP-binding protein HflX [Vibrio cholerae B33]
 gi|229355961|gb|EEO20880.1| GTP-binding protein HflX [Vibrio cholerae BX 330286]
 gi|229369025|gb|ACQ59448.1| GTP-binding protein HflX [Vibrio cholerae MJ-1236]
 gi|254847364|gb|EET25778.1| GTP-binding protein HflX [Vibrio cholerae MO10]
 gi|255735197|gb|EET90599.1| GTP-binding protein HflX [Vibrio cholera CIRS 101]
 gi|262031369|gb|EEY49978.1| GTP-binding protein HflX [Vibrio cholerae INDRE 91/1]
 gi|297540002|gb|EFH76065.1| GTP-binding protein HflX [Vibrio cholerae MAK 757]
          Length = 429

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 94/267 (35%), Gaps = 27/267 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +E + 
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRERIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     ++    QG+          I ++G++NAGKS+LFN + +  V    D    T
Sbjct: 173 AILRRLEKVAKQREQGRRARSRAEIPTISLVGYTNAGKSTLFNRITEAGV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            D     +DL       ++DT G             K T  E + AD++L + + + +  
Sbjct: 232 LDPTLRKIDLVDVGPAVLADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASDERF 291

Query: 312 -----------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                      +EI     +  + +  K D     +   +           IS+  G G 
Sbjct: 292 RENIQAVETVLQEID-AHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWISAMQGAGT 350

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKR 378
           E L   +   L+++  +    IP   +
Sbjct: 351 ELLFEALSERLASQVVEHHLRIPPRHQ 377


>gi|228916932|ref|ZP_04080494.1| GTP-binding protein era [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228929343|ref|ZP_04092368.1| GTP-binding protein era [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935620|ref|ZP_04098435.1| GTP-binding protein era [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948013|ref|ZP_04110299.1| GTP-binding protein era [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229093369|ref|ZP_04224476.1| GTP-binding protein era [Bacillus cereus Rock3-42]
 gi|229123838|ref|ZP_04253032.1| GTP-binding protein era [Bacillus cereus 95/8201]
 gi|229141037|ref|ZP_04269580.1| GTP-binding protein era [Bacillus cereus BDRD-ST26]
 gi|229186539|ref|ZP_04313701.1| GTP-binding protein era [Bacillus cereus BGSC 6E1]
 gi|229198426|ref|ZP_04325132.1| GTP-binding protein era [Bacillus cereus m1293]
 gi|228585126|gb|EEK43238.1| GTP-binding protein era [Bacillus cereus m1293]
 gi|228596970|gb|EEK54628.1| GTP-binding protein era [Bacillus cereus BGSC 6E1]
 gi|228642470|gb|EEK98758.1| GTP-binding protein era [Bacillus cereus BDRD-ST26]
 gi|228659659|gb|EEL15305.1| GTP-binding protein era [Bacillus cereus 95/8201]
 gi|228690025|gb|EEL43826.1| GTP-binding protein era [Bacillus cereus Rock3-42]
 gi|228811703|gb|EEM58038.1| GTP-binding protein era [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228824060|gb|EEM69877.1| GTP-binding protein era [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830357|gb|EEM75969.1| GTP-binding protein era [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842756|gb|EEM87842.1| GTP-binding protein era [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 266

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +D P TTR+ +          V   DT GI +    +    +K     ++  D++L +  
Sbjct: 2   SDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVN 61

Query: 308 I----NSKKEISFPK----NIDFIFIGTKSD---------LYSTYTEEYDH----LISSF 346
                   +E    K          +  K D         L   Y + +D      IS+ 
Sbjct: 62  AVEGFGRGEEFIIEKLKETKQPVFLVINKIDQVHPEQLLELIDQYRKLHDFAEIVPISAL 121

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            G  +E LI  IK  L    +  P +  +     + +++ +R
Sbjct: 122 DGNNVEALIGTIKKYLPEGPQYYPDNQVTDHPERFIIAELIR 163


>gi|227530101|ref|ZP_03960150.1| GTP-binding protein HflX [Lactobacillus vaginalis ATCC 49540]
 gi|227349983|gb|EEJ40274.1| GTP-binding protein HflX [Lactobacillus vaginalis ATCC 49540]
          Length = 424

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 108/301 (35%), Gaps = 46/301 (15%)

Query: 120 NGKIDLLEAESLADLISSET--------EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171
           N ++   +  +L D +            E+    +      +L     +   +L  +++ 
Sbjct: 80  NDELTPSQLRNLEDELGCRVLDRTALILEIFAERAQ-SKEAKLQVQIAELQYRLPRLQTS 138

Query: 172 IEADLD--------FSEEEDVQ---NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
               LD        F+     +     + + + N I  L+ ++       ++    R+  
Sbjct: 139 ANQRLDQQTGGGSGFTNRGSGETKLEMNRRTIQNSISHLRKELRVIDRSEEVKRKQRDKS 198

Query: 221 KI---VILGHSNAGKSSLFNAL-----AKKDVAIVT-DIPGTTRDVLTIDLDLEGYL-VK 270
            I    ++G++NAGKS++ N L     A +D  +   D+   T D     L L       
Sbjct: 199 AIPTAALVGYTNAGKSTIMNGLVEKYGAGEDKTVFEKDMLFATLDTSVRQLTLPDQKRFL 258

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------ 318
           +SDT G          E  K T  E  NADL++ + + +        K            
Sbjct: 259 LSDTVGFVSKLPTHLVESFKSTLAEAANADLLIQVIDASDPHYEDMMKTTQETLKQIGIE 318

Query: 319 NIDFIFIGTKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           NI  +++  K+D     Y     +   +IS+   E L+ L++ I+  L   + +    IP
Sbjct: 319 NIPMLYVFNKADKTDMEYPVLEGDDQIVISAKDDESLDLLVSAIRKHLFQDYVEAKMLIP 378

Query: 375 S 375
            
Sbjct: 379 F 379


>gi|172036243|ref|YP_001802744.1| GTP-binding protein [Cyanothece sp. ATCC 51142]
 gi|171697697|gb|ACB50678.1| GTP-binding protein [Cyanothece sp. ATCC 51142]
          Length = 530

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 24/195 (12%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA----IVTDIPGTTRD 256
           N + SH S+ +     +    I I+G++NAGKS+L NAL   +V     +   +  TTR 
Sbjct: 336 NKLQSHRSRLRQQRQKQEVPTIAIVGYTNAGKSTLINALTNAEVYTADQLFATLDPTTRR 395

Query: 257 VLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
           +  +D D +  Y   ++DT G          +  + T  EV  AD +L L +++      
Sbjct: 396 LSGVDSDTQQPYTFLLTDTVGFIHELPPSLVDAFRATLEEVTEADALLHLVDLSHPAWQH 455

Query: 316 FPKNI------------DFIFIGTKSDLYSTYT-----EEYD--HLISSFTGEGLEELIN 356
             +++              + +  K D     T     EEY     IS+    GLE L  
Sbjct: 456 HIQSVMTILQEMPLVPGPILLVFNKIDTVDGETLRIAQEEYPLAVFISASQRLGLETLRY 515

Query: 357 KIKSILSNKFKKLPF 371
           K+  ++        F
Sbjct: 516 KLSQLVQYALNNSSF 530


>gi|308061844|gb|ADO03732.1| GTP-binding protein Era [Helicobacter pylori Cuz20]
          Length = 301

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 81/217 (37%), Gaps = 28/217 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQQHASQFLALVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAENLR 410
                 + +R     +L      E D  +D   E  R
Sbjct: 188 MRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEER 224


>gi|218129169|ref|ZP_03457973.1| hypothetical protein BACEGG_00744 [Bacteroides eggerthii DSM 20697]
 gi|317475145|ref|ZP_07934412.1| GTP-binding protein HflX [Bacteroides eggerthii 1_2_48FAA]
 gi|217988547|gb|EEC54867.1| hypothetical protein BACEGG_00744 [Bacteroides eggerthii DSM 20697]
 gi|316908598|gb|EFV30285.1| GTP-binding protein HflX [Bacteroides eggerthii 1_2_48FAA]
          Length = 418

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 17/196 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +LN +  LK  + + I + K  +    G   ++ ++G++N GKS+L   L+K +
Sbjct: 181 EMDRRIILNRMSLLKERL-AEIDKQKATQRKNRGRLIRVALVGYTNVGKSTLMTLLSKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + +E     +SDT G          +  K T  EV  ADL+L
Sbjct: 240 V-FAENKLFATLDTTVRKVIIENLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLL 298

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTE-EYDHLISSFTGEG 350
            + +I+    +++I                 I +  K D Y+   + E D    +     
Sbjct: 299 HIVDISHPDFEEQIEVVNKTLADIGASGKPMILVFNKIDAYTYIAKAEDDLTPRTKENLT 358

Query: 351 LEELINKIKSILSNKF 366
           LEEL+    + + +  
Sbjct: 359 LEELMKTWMAKMEDNC 374


>gi|302878478|ref|YP_003847042.1| GTP-binding proten HflX [Gallionella capsiferriformans ES-2]
 gi|302581267|gb|ADL55278.1| GTP-binding proten HflX [Gallionella capsiferriformans ES-2]
          Length = 382

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 32/225 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               +++   +  LK  +    +Q  +    RN    + + I+G++NAGKS+LFN L K 
Sbjct: 161 ELDRRKLDKRVHLLKERLEKLKAQRDVMRRSRNRSGVFSVSIVGYTNAGKSTLFNRLTKA 220

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +V  V +    T D  +  +  EG   + +SDT G             + T  E   ADL
Sbjct: 221 NV-YVANQLFATLDTTSRRMYSEGAGEIVVSDTVGFIRHLPHGLVAAFRSTLEETIQADL 279

Query: 302 ILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTE-EYDHLI---- 343
           +L + + ++              KEI    +I  + +  K DL       E D       
Sbjct: 280 LLHVVDASNPNRDDQIAEVNKVLKEID-AGDIPQLMVYNKVDLTEMAAGAERDDCDRIAR 338

Query: 344 ---SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
              S+ +G G+++L   + +      K     +  ++  +     
Sbjct: 339 VFLSAVSGAGMDDLRLALTAA-----KDAKLVVEQNENQIRQARN 378


>gi|238653814|emb|CAV30756.1| Fe2+ transport system protein B [magnetite-containing magnetic
           vibrio]
          Length = 728

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 83/207 (40%), Gaps = 23/207 (11%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           +      + ++G+ N GK++L NAL     + V + P  T  + +  +  +G+ + + D 
Sbjct: 20  VDNETITVALVGNPNTGKTTLSNALTGAHDS-VGNYPRVTVSMRSRTIQHKGWTLNLVDL 78

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------EISFPKNIDFIF 324
            GI        +E I R F++ E  D++L + +  +            E+  P+      
Sbjct: 79  PGIYSLTSQSPEERIGRDFIQDERPDIVLNVLDGGTLDRSLFLTTQLIEMGRPRVYALNM 138

Query: 325 IGT--------KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           +            +   +  +       + TG+G+E+L++ +  +   + +  P  IP  
Sbjct: 139 VDEMHKKGYSIDCEELGSMLDGPVIETVATTGQGMEQLLDAVIRVAEQERQDKPMRIPYD 198

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLD 403
               YHL + +  +++   +     L+
Sbjct: 199 ----YHLEEAIDRVQVLIADLHPGALE 221


>gi|163786791|ref|ZP_02181239.1| hypothetical protein FBALC1_16437 [Flavobacteriales bacterium
           ALC-1]
 gi|159878651|gb|EDP72707.1| hypothetical protein FBALC1_16437 [Flavobacteriales bacterium
           ALC-1]
          Length = 403

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 76/198 (38%), Gaps = 24/198 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQ-----GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
             + V + I  LK+ I +   Q     G  G+++R    + ++G++N GKS+L N ++K 
Sbjct: 167 DRRIVRDKITLLKSKIKTIDKQMAVQRGNRGKMVR----VALVGYTNVGKSTLMNVISKS 222

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V    +    T D     + +      +SDT G          E  K T  EV  ADL+
Sbjct: 223 KV-FAENKLFATLDTTVRKVVIGNLPFLVSDTVGFIRKLPTQLVESFKSTLDEVREADLL 281

Query: 303 LLLKEI------------NSKKEISFPKNIDFIFIGTKSDLYST--YTEEYDHLISSFTG 348
           L + +I            N   +    K+   I +  K D Y    + EE   +  +   
Sbjct: 282 LHVVDISHSNFEEHIDSVNQILDEIESKDKPTIMVFNKIDAYEAEPFDEEDLIVERTKAN 341

Query: 349 EGLEELINKIKSILSNKF 366
             +EE      S + +  
Sbjct: 342 YSIEEWKKTWMSKIGDNA 359


>gi|134098336|ref|YP_001103997.1| GTP-binding protein [Saccharopolyspora erythraea NRRL 2338]
 gi|291004245|ref|ZP_06562218.1| GTP-binding protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133910959|emb|CAM01072.1| GTP-binding protein [Saccharopolyspora erythraea NRRL 2338]
          Length = 502

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 80/222 (36%), Gaps = 28/222 (12%)

Query: 188 SSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDV 244
             + +   I  L+ +I++   +   K G    N    + I G++NAGKSSL NAL    V
Sbjct: 243 DRRRIHKRISKLRKEIAAMRTVRGTKRGRREANAVPGVAIAGYTNAGKSSLLNALTGAGV 302

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D  T   D  +G    ++DT G          E  + T  EV  ADL++
Sbjct: 303 -LVEDALFATLDPTTRRADTPDGRPHTLTDTVGFVRHLPHQLVEAFRSTLEEVTGADLLV 361

Query: 304 LLKEINSKK-------------EISFPKNIDFI---FIGTKSDLYS-------TYTEEYD 340
            + +   +              EI+            +  K D  +              
Sbjct: 362 HVVDGAEQAPHEQVAAVREVLTEIAEDHGAPVPPELLVVNKIDSVAPTRMAELRRLLPGA 421

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
             +S+ +GEG+E L   I   L      +   +P  +  L  
Sbjct: 422 VFVSAHSGEGVEALREIIADRLPRPEVFVDALVPYTRGELVA 463


>gi|228987550|ref|ZP_04147669.1| GTP-binding protein era [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229157914|ref|ZP_04285988.1| GTP-binding protein era [Bacillus cereus ATCC 4342]
 gi|228625573|gb|EEK82326.1| GTP-binding protein era [Bacillus cereus ATCC 4342]
 gi|228772282|gb|EEM20729.1| GTP-binding protein era [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 266

 Score = 66.4 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +D P TTR+ +          V   DT GI +    +    +K     ++  D++L +  
Sbjct: 2   SDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVN 61

Query: 308 I----NSKKEISFPK----NIDFIFIGTKSD---------LYSTYTEEYDH----LISSF 346
                   +E    K          +  K D         L   Y + +D      IS+ 
Sbjct: 62  AVEGFGRGEEFIIEKLKETKQPVFLVINKIDQVHPEQLLELIDQYRKLHDFAEIVPISAL 121

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            G  +E LI  IK  L    +  P +  +     + +++ +R
Sbjct: 122 DGNNVESLIGTIKKYLPEGPQYYPDNQVTDHPERFIIAELIR 163


>gi|109947438|ref|YP_664666.1| GTP-binding protein Era [Helicobacter acinonychis str. Sheeba]
 gi|123066224|sp|Q17XF9|ERA_HELAH RecName: Full=GTPase Era
 gi|109714659|emb|CAJ99667.1| GTP-binding protein [Helicobacter acinonychis str. Sheeba]
          Length = 301

 Score = 66.4 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLNLCQKPHILALSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQQYASQFLSLIPLSAKKSQNLNALLECISEHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR 388
                 + +R
Sbjct: 188 MRDIYKEIIR 197


>gi|303233812|ref|ZP_07320466.1| GTP-binding protein HflX [Finegoldia magna BVS033A4]
 gi|302495246|gb|EFL54998.1| GTP-binding protein HflX [Finegoldia magna BVS033A4]
          Length = 415

 Score = 66.4 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 110/293 (37%), Gaps = 29/293 (9%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T+    ++ +      L  L G + D L+     I        + +V   + ++ ++
Sbjct: 109 RAKTKQSVLQVELAEYKYRLPRLIG-FRDHLSRTGGGIGTRGPGETKLEVDRRTIQKKID 167

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVT 248
           +I      I       +   +  +   + ++G++NAGKS+L N L         +     
Sbjct: 168 NIKRELKSIDKSQENMRKQRLKSDIKMVSMVGYTNAGKSTLSNKLVNFYKDKYTEEFETE 227

Query: 249 DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           D+   T D       L       + DT G  +       E  K T L+++++DLIL + +
Sbjct: 228 DLLFKTLDTTLRKCTLPNKKQCLVIDTVGFIKDIPTDLIEAFKSTLLDLKHSDLILFVLD 287

Query: 308 INSK-------------KEISFPKNIDFIFIGTKSD----LYSTYTEEYDHLISSFTGEG 350
            +S              KE+          +  KSD    +   Y  +    IS+F  E 
Sbjct: 288 SSSSDLDNQITTTMDILKELKVLDKPMVT-VFNKSDKNPNVIFPYNLDNKIKISAFNDED 346

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRH-LYHLSQTVRYLEMASLNEKDCGL 402
           +E+L+ KI+  L   +K +      + +  L  + Q  +  E  S N  D  L
Sbjct: 347 IEKLLYKIQEELYGNYKCVNMKFDYNHQDVLNAVLQNFKC-ENVSYNNDDVSL 398


>gi|297538000|ref|YP_003673769.1| ferrous iron transport protein B [Methylotenera sp. 301]
 gi|297257347|gb|ADI29192.1| ferrous iron transport protein B [Methylotenera sp. 301]
          Length = 596

 Score = 66.4 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 19/183 (10%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I +LG  N GKS+LFN ++    A V + PG T D+++  + + G++ ++ D  GI + 
Sbjct: 3   RIALLGMPNTGKSTLFNRISGAS-ARVGNWPGITVDLMSAKILIGGHIAELIDLPGIYDL 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-KKEISF-----PKNIDFIFIGTKSDLYST 334
               E E + R FL     DLI++L   +   +++S        NI  +     +D    
Sbjct: 62  HGFSEDEQVVRRFLSNNAVDLIIVLLNSSQIDRQLSLVLQIKKLNIPSVLALNMADEAKQ 121

Query: 335 YTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                D              IS+  G+GL + +     I++         + S      H
Sbjct: 122 SGITIDTESLANDLHIPVLSISAKYGDGLPKALQAATQIINQNQTATDPKVISQLLQEDH 181

Query: 383 LSQ 385
             +
Sbjct: 182 QIE 184


>gi|70922689|ref|XP_734471.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56507242|emb|CAH84539.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 216

 Score = 66.4 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ I+G  N+GKSSL N +  K ++ V+    TT+  +      +   +   D+ GI  
Sbjct: 13  LKVAIIGAPNSGKSSLLNTILDKTISSVSPKINTTKQDIKGIYTKDNVQLIFIDSPGIIP 72

Query: 280 TDDIVE--KEGIKRTFLEVENADLILLLKE 307
           +    +  KE +   +   E ADL+L + +
Sbjct: 73  SHKKKKFCKELVNYAWKGYEEADLVLFVVD 102


>gi|329957488|ref|ZP_08297963.1| GTP-binding protein HflX [Bacteroides clarus YIT 12056]
 gi|328522365|gb|EGF49474.1| GTP-binding protein HflX [Bacteroides clarus YIT 12056]
          Length = 419

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 17/196 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +LN +  LK  + + I + K  +    G   ++ ++G++N GKS+L   L+K +
Sbjct: 181 EMDRRIILNRMSLLKERL-AEIDKQKATQRKNRGRLIRVALVGYTNVGKSTLMTLLSKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + +E     +SDT G          +  K T  EV  ADL+L
Sbjct: 240 V-FAENKLFATLDTTVRKVIIENLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLL 298

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTE-EYDHLISSFTGEG 350
            + +I+    +++I                 I +  K D Y+   + E D    +     
Sbjct: 299 HIVDISHPDFEEQIEVVNKTLADIGASGKPMILVFNKIDAYTYVAKAEDDLTPRTKENLT 358

Query: 351 LEELINKIKSILSNKF 366
           LEEL+    + + +  
Sbjct: 359 LEELMKTWMAKMEDNC 374


>gi|294101226|ref|YP_003553084.1| small GTP-binding protein [Aminobacterium colombiense DSM 12261]
 gi|293616206|gb|ADE56360.1| small GTP-binding protein [Aminobacterium colombiense DSM 12261]
          Length = 579

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 15/140 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++++G+ N GKS +F+ L     AI ++ PGTT   L   L     + +I D  G    D
Sbjct: 11  LLLIGNPNVGKSVIFSRLTGV-RAISSNYPGTTVGFLEGWLRYNSEVYRIIDVPGAYTLD 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTY 335
              E E + R  ++ E ADL +++ +  + +        +  + I  I      D     
Sbjct: 70  PTNEAEQVARRMVD-EGADLAIIVLDATALERNLYLAFQAMERGIHTIVALNMVD----- 123

Query: 336 TEEYDHLISSFTGEGLEELI 355
             E  H   S   E LE+L+
Sbjct: 124 --EARHRGISIDVEKLEKLL 141


>gi|229549561|ref|ZP_04438286.1| HflX subfamily GTP-binding protein [Enterococcus faecalis ATCC
           29200]
 gi|255972259|ref|ZP_05422845.1| GTP-binding protein [Enterococcus faecalis T1]
 gi|256956550|ref|ZP_05560721.1| GTP-binding protein [Enterococcus faecalis DS5]
 gi|256961468|ref|ZP_05565639.1| GTP-binding protein [Enterococcus faecalis Merz96]
 gi|293382117|ref|ZP_06628061.1| GTP-binding protein HflX [Enterococcus faecalis R712]
 gi|293386628|ref|ZP_06631205.1| GTP-binding protein HflX [Enterococcus faecalis S613]
 gi|300861066|ref|ZP_07107153.1| GTP-binding protein HflX [Enterococcus faecalis TUSoD Ef11]
 gi|312908245|ref|ZP_07767209.1| GTP-binding protein HflX [Enterococcus faecalis DAPTO 512]
 gi|312910684|ref|ZP_07769525.1| GTP-binding protein HflX [Enterococcus faecalis DAPTO 516]
 gi|312951163|ref|ZP_07770066.1| GTP-binding protein HflX [Enterococcus faecalis TX0102]
 gi|229305226|gb|EEN71222.1| HflX subfamily GTP-binding protein [Enterococcus faecalis ATCC
           29200]
 gi|255963277|gb|EET95753.1| GTP-binding protein [Enterococcus faecalis T1]
 gi|256947046|gb|EEU63678.1| GTP-binding protein [Enterococcus faecalis DS5]
 gi|256951964|gb|EEU68596.1| GTP-binding protein [Enterococcus faecalis Merz96]
 gi|291080496|gb|EFE17860.1| GTP-binding protein HflX [Enterococcus faecalis R712]
 gi|291083921|gb|EFE20884.1| GTP-binding protein HflX [Enterococcus faecalis S613]
 gi|300850105|gb|EFK77855.1| GTP-binding protein HflX [Enterococcus faecalis TUSoD Ef11]
 gi|310625659|gb|EFQ08942.1| GTP-binding protein HflX [Enterococcus faecalis DAPTO 512]
 gi|310630828|gb|EFQ14111.1| GTP-binding protein HflX [Enterococcus faecalis TX0102]
 gi|311289060|gb|EFQ67616.1| GTP-binding protein HflX [Enterococcus faecalis DAPTO 516]
 gi|315034728|gb|EFT46660.1| GTP-binding protein HflX [Enterococcus faecalis TX0027]
 gi|315146217|gb|EFT90233.1| GTP-binding protein HflX [Enterococcus faecalis TX4244]
 gi|315152649|gb|EFT96665.1| GTP-binding protein HflX [Enterococcus faecalis TX0031]
 gi|315159503|gb|EFU03520.1| GTP-binding protein HflX [Enterococcus faecalis TX0312]
 gi|315167527|gb|EFU11544.1| GTP-binding protein HflX [Enterococcus faecalis TX1341]
 gi|327535556|gb|AEA94390.1| GTP-binding protein HflX [Enterococcus faecalis OG1RF]
          Length = 413

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLIKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 SEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|258404454|ref|YP_003197196.1| ferrous iron transport protein B [Desulfohalobium retbaense DSM
           5692]
 gi|257796681|gb|ACV67618.1| ferrous iron transport protein B [Desulfohalobium retbaense DSM
           5692]
          Length = 725

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 19/186 (10%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   + + G+ N+GK++LFNAL       V + PG T D     +   G  + I D  G 
Sbjct: 3   NTLSVALAGNPNSGKTTLFNALTGS-RQHVGNYPGITVDKKEGFVQAAGQELHIVDLPGT 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGT---- 327
                  ++E + R FL     D+++ +   +S +   +            + +      
Sbjct: 62  YSLTAYSQEELVARNFLADTRPDVVVDVANASSLERNLYLAVQFLEMGAPLVLVLNMIDE 121

Query: 328 --------KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                    SDL S           +  G+G + L+  ++               S+   
Sbjct: 122 ARKHGLAIDSDLLSQRLGVPVVETVARYGQGKQALLKAVQQRGKQTEGDWEPLYISYGPD 181

Query: 380 LYHLSQ 385
           L  + Q
Sbjct: 182 LDPVLQ 187


>gi|227486686|ref|ZP_03917002.1| HflX subfamily GTP-binding protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235274|gb|EEI85289.1| HflX subfamily GTP-binding protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 411

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 101/266 (37%), Gaps = 28/266 (10%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            + T+  R                +W   L+     I         E +     + +  D
Sbjct: 107 RAHTKEARLKIKLAQLKYQLPRINKWFAYLSRQAGGIGTR---GPGETMLETDRRAIERD 163

Query: 196 ILFLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFN---ALAKKDVAIVTD-I 250
           I  L+  +       ++    R+  + I ++G++NAGKS++ N    L   +  + +D +
Sbjct: 164 IRSLEKALKDIEKTKRINRKSRDNIFNISLVGYTNAGKSTILNGMMRLFGSEKYVYSDDL 223

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN- 309
              T D  T  LD     V ++DT G  +       +    T  E++ AD++L++ + + 
Sbjct: 224 LFATLDTSTRRLDFSNTKVTLTDTVGFIDNLSKELNDSFLTTLEEIKFADMLLIVIDASH 283

Query: 310 -----------SKKEISFPKNIDFIFIGTKSDLY------STYTEEYD-HLISSFTGEGL 351
                      S  EI        I++  K D        S Y  EY+   IS+   E L
Sbjct: 284 NIDGQLATIDKSLDEIEL-DGKQIIYVFNKMDKVEDVTATSLYKREYERIFISAKNDEDL 342

Query: 352 EELINKIKSILSNKFKKLPFSIPSHK 377
             L N+I  ++  +++++   IP  K
Sbjct: 343 HNLKNEIVKVIKEEYREVTMHIPFDK 368


>gi|168702530|ref|ZP_02734807.1| GTP-binding protein Hflx [Gemmata obscuriglobus UQM 2246]
          Length = 451

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 79/207 (38%), Gaps = 23/207 (11%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + V + I  LK  +   +++ +     R   + + ++G++NAGKS L + L K DV  
Sbjct: 177 DRRLVQHRIRDLKRKLDEVLARKEREVKSRAEEHTVSLVGYTNAGKSQLMHTLTKADV-Y 235

Query: 247 VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           V +   +T D  T    +  +  V +SDT G             K T  E  +A L+L +
Sbjct: 236 VKNQLFSTLDTRTRQWHIRDWGRVLLSDTVGFIRDLPHHLVASFKATLSEARHAKLLLHV 295

Query: 306 KEINSKKEISFPK------------NIDFIFIGTKSDLYSTYT--------EEYDHLISS 345
            + +S +                  +   + +  K D     +              +S 
Sbjct: 296 VDASSPQAEVHINAVNTVLKELDCGDRPTLLVLNKVDRLQDRSLLTLLEAHHPRAVAVSG 355

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS 372
            TGEGL++L + +   L+  F +    
Sbjct: 356 LTGEGLDQLEDAVMEALAEDFAEAEIV 382


>gi|238750421|ref|ZP_04611922.1| hypothetical protein yrohd0001_21320 [Yersinia rohdei ATCC 43380]
 gi|238711352|gb|EEQ03569.1| hypothetical protein yrohd0001_21320 [Yersinia rohdei ATCC 43380]
          Length = 259

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 10/121 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + AGKSSL NAL + +V  V+D+   TRDVL + L    + + + D  G+ E++
Sbjct: 7   IGIMGKTGAGKSSLCNALFQGEVTPVSDVNACTRDVLRLRLSSGDHSLILVDLPGVGESE 66

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLY 332
              E+         + + DLIL + + + +         + +        +F+  ++D  
Sbjct: 67  QRDEEYEYL-YRKVLPDLDLILWVIKADDRAFSVDERFYRRVMSDHQQRVLFVVNQADKI 125

Query: 333 S 333
            
Sbjct: 126 E 126


>gi|220918505|ref|YP_002493809.1| ferrous iron transport protein B [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956359|gb|ACL66743.1| ferrous iron transport protein B [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 740

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I G+ N+GKS+L N LA      V + PG T +      +  G  V++ D  G   
Sbjct: 21  VTIAIAGNPNSGKSTLVNGLAGS-RLQVGNWPGVTVERKEASFEHGGRRVRLVDLPGTYS 79

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
                ++E + R +L  E  D+++ + +  + +
Sbjct: 80  LSPWSQEERVARDYLVEERPDVVVNVVDATNLE 112


>gi|16763181|ref|NP_458798.1| GTPase HflX [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29144660|ref|NP_808002.1| GTPase HflX [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213052280|ref|ZP_03345158.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213428671|ref|ZP_03361421.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213612847|ref|ZP_03370673.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
 gi|213648970|ref|ZP_03379023.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|289808968|ref|ZP_06539597.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
 gi|289829979|ref|ZP_06547430.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25332266|pir||AB1049 HflX protein, probable GTP-binding protein hflX [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16505489|emb|CAD06839.1| HflX protein, putative GTP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29140299|gb|AAO71862.1| HflX protein, putative GTP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 426

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 95/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLEKVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNQIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPYDLVAAFKATLQETRQATLLLHVVDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ +G G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLMVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQSGVGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +   +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLLPQEGRLRSRFYQLQAIE 390


>gi|256619573|ref|ZP_05476419.1| GTP-binding protein [Enterococcus faecalis ATCC 4200]
 gi|256963441|ref|ZP_05567612.1| GTP-binding protein [Enterococcus faecalis HIP11704]
 gi|307272709|ref|ZP_07553956.1| GTP-binding protein HflX [Enterococcus faecalis TX0855]
 gi|307276093|ref|ZP_07557226.1| GTP-binding protein HflX [Enterococcus faecalis TX2134]
 gi|256599100|gb|EEU18276.1| GTP-binding protein [Enterococcus faecalis ATCC 4200]
 gi|256953937|gb|EEU70569.1| GTP-binding protein [Enterococcus faecalis HIP11704]
 gi|306507423|gb|EFM76560.1| GTP-binding protein HflX [Enterococcus faecalis TX2134]
 gi|306510323|gb|EFM79346.1| GTP-binding protein HflX [Enterococcus faecalis TX0855]
          Length = 413

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLIKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 PEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|167765041|ref|ZP_02437162.1| hypothetical protein BACSTE_03435 [Bacteroides stercoris ATCC
           43183]
 gi|167697710|gb|EDS14289.1| hypothetical protein BACSTE_03435 [Bacteroides stercoris ATCC
           43183]
          Length = 419

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 19/207 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +LN +  LK+ + + I + K  +    G   ++ ++G++N GKS+L   L+K +
Sbjct: 181 EMDRRIILNRMSLLKDRL-AEIDKQKATQRKNRGRLIRVALVGYTNVGKSTLMTLLSKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + +E     +SDT G          +  K T  EV  ADL+L
Sbjct: 240 V-FAENKLFATLDTTVRKVIIENLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLL 298

Query: 304 LLKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            + +I+    +++I                 I +  K D Y TY  + D  ++  T E L
Sbjct: 299 HIVDISHPDFEEQIEVVNKTLADIGASGKPMILVFNKIDAY-TYVAKADDDLTPRTKENL 357

Query: 352 EELINKIKSILSNKFKKLPFSIPSHKR 378
              + ++      K +     I + +R
Sbjct: 358 T--LEELMKTWMAKLEDNCLFISARER 382


>gi|89075984|ref|ZP_01162356.1| putative GTP-binding protein HflX [Photobacterium sp. SKA34]
 gi|89048333|gb|EAR53912.1| putative GTP-binding protein HflX [Photobacterium sp. SKA34]
          Length = 429

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 93/282 (32%), Gaps = 27/282 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ + 
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDRIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL   + ++    QG+          I ++G++NAGKS+LFN +    V     +  T 
Sbjct: 173 TILRRLDKVAKQRDQGRRARNRAEIPTISLVGYTNAGKSTLFNRITDAGVYAADQLFATL 232

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-- 312
              L      +     ++DT G             K T  E + ADL+L + + +  +  
Sbjct: 233 DPTLRKIAVADVGTAILADTVGFIRHLPHDLVAAFKATLKETQEADLLLHVVDASDDRFR 292

Query: 313 ----------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLEE 353
                     E      +  + I  K D                     +S+  G+G++ 
Sbjct: 293 ENVEAVETVLEEIDAGEVPTLIIMNKIDNLEHAEPRIARDEEGVPRRVWVSAMEGQGIDL 352

Query: 354 LINKIKSILSN----KFKKLPFSIPSHKRHLYHLSQTVRYLE 391
           L   +   LS        ++P  +    R  ++    +   E
Sbjct: 353 LFQALTERLSGTMVAHTLRVPPEMIGRIRSKFYQLGCILQEE 394


>gi|145219336|ref|YP_001130045.1| ferrous iron transport protein B [Prosthecochloris vibrioformis DSM
           265]
 gi|145205500|gb|ABP36543.1| ferrous iron transport protein B [Chlorobium phaeovibrioides DSM
           265]
          Length = 795

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 25/183 (13%)

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
               L   ++    +     +I       ++G+ N GK++LFNAL   +   V + PG T
Sbjct: 3   QAEELVGAVTKLRPKADRRRVI------AVVGNPNCGKTTLFNALTGLNQT-VGNWPGVT 55

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-- 312
            D  +     +    ++ D  GI     I E E + R ++    A+LI+ + + ++    
Sbjct: 56  VDRKSGTFAFKSEAYELVDLPGIYSLSAISEDEAVARDYILGGEAELIINIVDASNPDRN 115

Query: 313 ----EISFPKNIDFIFIGT------------KSDLYSTYTEEYDHLISSFTGEGLEELIN 356
                     N+  +                  D  S+        I +  GEG+EEL  
Sbjct: 116 LYLTSRLLEMNVPVLVALNMLDAAGERGIDINIDALSSGLGCRVVPIVASRGEGIEELKE 175

Query: 357 KIK 359
            I 
Sbjct: 176 AIA 178


>gi|331675666|ref|ZP_08376411.1| putative histone [Escherichia coli TA280]
 gi|331067160|gb|EGI38570.1| putative histone [Escherichia coli TA280]
          Length = 154

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 5/137 (3%)

Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236
           F+    +    + E +   L  L   +S HI +  L ++  +   I I+G S AGKSSL 
Sbjct: 4   FTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLC 62

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLE 295
           NAL + +V  V+D+   TR+V    L   G+ + I+D  G+ E+ D   E E + R    
Sbjct: 63  NALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDI-- 120

Query: 296 VENADLILLLKEINSKK 312
           +   DL+L L + + + 
Sbjct: 121 LPELDLVLWLIKADDRA 137


>gi|224368961|ref|YP_002603125.1| hypothetical protein HRM2_18590 [Desulfobacterium autotrophicum
           HRM2]
 gi|223691678|gb|ACN14961.1| hypothetical protein HRM2_18590 [Desulfobacterium autotrophicum
           HRM2]
          Length = 552

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 25/192 (13%)

Query: 199 LKNDISSHISQ--GKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           L  DIS    Q   +  +  R G  ++ I+G++NAGKS+L N L K ++ I  +    T 
Sbjct: 363 LSKDISKIRKQRSQQRSQRNRRGIPVISIVGYTNAGKSTLLNTLTKSEI-IAENRLFATL 421

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--- 311
           D  +  L       V I+DT G  +       E    T  E+E+AD++L + +I++    
Sbjct: 422 DPSSRRLRFPKDLEVIITDTVGFIQDLPEELMEAFHATLEELEDADILLHVVDISNPRYE 481

Query: 312 ----------KEISFPKNIDFIFIGTK------SDLYSTYTEEYDHLISSFTGEGLEELI 355
                     KE+   K    +++  K      +D  + +      L+S+   E L+ L+
Sbjct: 482 QQMGSVERILKELGLEK-TPVLYVFNKQDKIALADFDNPWLLNQGSLVSATRPETLKPLV 540

Query: 356 NKIKSILSNKFK 367
           ++++S++  +  
Sbjct: 541 SRLESMIRQQTG 552


>gi|126726094|ref|ZP_01741936.1| GTP-binding protein Era [Rhodobacterales bacterium HTCC2150]
 gi|126705298|gb|EBA04389.1| GTP-binding protein Era [Rhodobacterales bacterium HTCC2150]
          Length = 302

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 24/172 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 5   RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGISIEGDSQIVFVDTPG 63

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISF------PKNIDFIFIG 326
           +      +++  +   +    +ADL++LL E    I    E                   
Sbjct: 64  LFRPRRRLDRAMVAAAWSGAADADLVVLLVEAHRGITEGVEAILAGLGERADGRRVALAI 123

Query: 327 TKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            K D             L  T+  E   LIS+  G G+++L   +   L N 
Sbjct: 124 NKIDKVQASKLLALTEKLNETFPFEQTFLISAERGHGVDDLRVWLAGELPNG 175


>gi|297624209|ref|YP_003705643.1| GTP-binding proten HflX [Truepera radiovictrix DSM 17093]
 gi|297165389|gb|ADI15100.1| GTP-binding proten HflX [Truepera radiovictrix DSM 17093]
          Length = 568

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 22/246 (8%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           E Q ++ +  +  +++ L G+    ++ +   I        + +V     ++ +  +   
Sbjct: 304 EAQVQVELAQLQYQVTRLAGRGR-AMSRLGGGIGTRGPGETKLEVDRRRIRDRIAALQAE 362

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTR 255
              IS   ++G+ G        I ++G++NAGKS+LFNALAK DV     +   +  TTR
Sbjct: 363 VAQISQRRAEGRKGRKASEVPVIALVGYTNAGKSTLFNALAKADVLSQNRLFATLRPTTR 422

Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKK 312
           +     L   G  V  +DT G          +  + T  E+ +A+L+L + +     +  
Sbjct: 423 EGWLPALGAWGGKVLYTDTVGFIRDLPEELVDAFRATLEELHDAELLLHVVDAATPGAPD 482

Query: 313 EISFPKNI--------DFIFIGTKSDLYSTYTEE------YDHLISSFTGEGLEELINKI 358
            ++    I            +  K+DL +    +          +S+ TG GL+ L   +
Sbjct: 483 RVAAVNRILDDLGVEVPRTVVLNKADLAAPAELKDLAKRYNALGVSAATGAGLDALKASL 542

Query: 359 KSILSN 364
             +L  
Sbjct: 543 AQLLEG 548


>gi|254516810|ref|ZP_05128868.1| GTP-binding proten HflX [gamma proteobacterium NOR5-3]
 gi|219674315|gb|EED30683.1| GTP-binding proten HflX [gamma proteobacterium NOR5-3]
          Length = 439

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 66/411 (16%), Positives = 122/411 (29%), Gaps = 62/411 (15%)

Query: 37  ICKKKKPFPRKASLRYFFGLDGRILD----KGLLIVFPSPESFTGEDSAEFHVHGGIAVV 92
              +     R   +      DG  +D    + L++      S  G+  A    H  +   
Sbjct: 21  FFDRPDSGERAVLVNIKLDNDGGGIDPREFEALVL------SAGGDPVALVTGHRSMPKA 74

Query: 93  NGI-----LEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE--------- 138
                   LEE+A++     A+   F      N  +   +  +L   + +          
Sbjct: 75  RSFVGSGKLEEIAEVLRAEDASLVIF------NHSLSPSQERNLEAALKARVLDRTGLIL 128

Query: 139 ---------TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
                     E + ++ +  +    + L   W   L   +  I        + +      
Sbjct: 129 DIFAQRARTHEGKLQVELAQLRHMSTRLVRGWTH-LERQKGGIGMRGPGETQLETDRRLL 187

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +  +  I    + +     QG+          + ++G++NAGKS+LFN L    V    D
Sbjct: 188 RARIKAITARLDRVRRQRGQGRKSRQRAELSTVALVGYTNAGKSTLFNTLTGSKV-YAAD 246

Query: 250 IPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D     L+++    V ++DT G          E  K T  E   ADL+L + + 
Sbjct: 247 QLFATLDPTLRRLEVDNLGPVVLADTVGFIARLPHGLVEAFKATLEETREADLLLHVVDA 306

Query: 309 NSKK------------EISFPKNIDFIFIGTKSDLY--------STYTEEYDHLISSFTG 348
            S              E         + I  K DL                   IS+  G
Sbjct: 307 ASDDRDDNRREVHAVLEEIGADERPVLEIYNKIDLLEMQPRIDRDDEGRPCRVWISAQKG 366

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
            GL+ ++  +   L          +   +  L      +  +E     +  
Sbjct: 367 LGLDLVLEALAERLGEDVLAKDVELRPDQAKLRAALYAMGAVEHEKFGDDG 417


>gi|11499970|ref|NP_071216.1| iron (II) transporter (feoB-2) [Archaeoglobus fulgidus DSM 4304]
 gi|2650700|gb|AAB91270.1| iron (II) transporter (feoB-2) [Archaeoglobus fulgidus DSM 4304]
          Length = 563

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 19/155 (12%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G+ N GK+SL NAL   D + V + PG T +       + G  V   D  GI      
Sbjct: 1   MVGNPNVGKTSLLNALTGGDFS-VGNFPGVTVEKKEGKGVIGGKTVTFVDLPGIYSFQTE 59

Query: 284 VEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPK-----NIDFIFIGTKSDLYSTYTE 337
              E + R +L+ E  DLIL ++  +N ++ +          I  I +    D       
Sbjct: 60  SLDEKVARDYLKNEKPDLILNVVNALNLERNLYLTLQLTEFGIPMIVVLNMIDEAEKEGI 119

Query: 338 EYD------------HLISSFTGEGLEELINKIKS 360
             D               S+  G G+EEL  +I  
Sbjct: 120 RIDAERLSEILGVPVVKTSAVRGVGIEELKREILK 154


>gi|315645734|ref|ZP_07898858.1| ribosome biogenesis GTP-binding protein YsxC [Paenibacillus vortex
           V453]
 gi|315279212|gb|EFU42522.1| ribosome biogenesis GTP-binding protein YsxC [Paenibacillus vortex
           V453]
          Length = 214

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 11/124 (8%)

Query: 222 IVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIR 278
           I + G SN GKSSL N  +A+K++A  +  PG T+ +    ++ + YLV       A + 
Sbjct: 26  IALAGRSNVGKSSLINRMIARKNLARTSSTPGKTQQLNYYRVNDDLYLVDFPGYGYAKVS 85

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSD 330
           +T      E I+R  L  E   L+LL+ ++    SK +IS  +     N     + TK+D
Sbjct: 86  KTQRAAFGEMIERYLLNREELKLVLLIVDMRHPPSKDDISMYEWLQHYNRPVCVVATKAD 145

Query: 331 LYST 334
               
Sbjct: 146 KIPK 149


>gi|289597222|ref|YP_003483918.1| GTP-binding proten HflX [Aciduliprofundum boonei T469]
 gi|289535009|gb|ADD09356.1| GTP-binding proten HflX [Aciduliprofundum boonei T469]
          Length = 405

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 87/253 (34%), Gaps = 31/253 (12%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           I ++    R  +M  +           I +L H     E        E       +++  
Sbjct: 93  IFADRARSRE-AMMQVEYANLKYETSHIKELIHQIRLGEHPGFMGGGEYEIADYYEQIRR 151

Query: 195 DILFLKNDISS---HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            +  ++ ++     H  + +          + I G++N GKS+L  AL+ +DV I   + 
Sbjct: 152 KMARIRKELEKLKVHREERRKRRKEEGYILVGIAGYTNTGKSTLLKALSGRDVVIENRMF 211

Query: 252 GT--TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
            T  TR        +    + I+DT G  E          + T  E+  AD++LLL    
Sbjct: 212 STLSTRTS-----KIGKEKILITDTVGFVENMPPWLIRAFEPTLEEIYKADIVLLLLNCQ 266

Query: 310 SKKE------------ISFPKNIDFIFIGTKSDLYSTYTEEY--------DHLISSFTGE 349
              E            +        I +  K D      E+            IS+  G 
Sbjct: 267 ESIEDFKRKMQVSLEILEGKSEGKIIPVINKIDSCKDLDEKIKIAKEIGEPIAISALRGI 326

Query: 350 GLEELINKIKSIL 362
           G+E++I +IK  +
Sbjct: 327 GIEDVIRRIKDEM 339


>gi|167038858|ref|YP_001661843.1| ferrous iron transport protein B [Thermoanaerobacter sp. X514]
 gi|300913557|ref|ZP_07130874.1| ferrous iron transport protein B [Thermoanaerobacter sp. X561]
 gi|307723428|ref|YP_003903179.1| ferrous iron transport protein B [Thermoanaerobacter sp. X513]
 gi|166853098|gb|ABY91507.1| ferrous iron transport protein B [Thermoanaerobacter sp. X514]
 gi|300890242|gb|EFK85387.1| ferrous iron transport protein B [Thermoanaerobacter sp. X561]
 gi|307580489|gb|ADN53888.1| ferrous iron transport protein B [Thermoanaerobacter sp. X513]
          Length = 657

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 19/168 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++    I + G++N GKS +FN L      I+ + PG T +     L  +G  +KI D  
Sbjct: 1   MKKEIVIALAGNANVGKSVIFNQLTGLTQ-IIGNWPGKTVERAEGLLRFKGRTIKIVDLP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKS 329
           GI       ++E + R F+  E  D+++ + + ++ +            ++  +    + 
Sbjct: 60  GIYSLSAYSQEEIVSREFIAFEKPDVVINVVDASNLERNLFFTVQLLELHVPMVMALNQV 119

Query: 330 D------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           D                          +  G+GLEELI+K   ++ + 
Sbjct: 120 DYALKKGIDINVKRLEELLGIPVVKTIATKGKGLEELIDKALEVVDSH 167


>gi|213964059|ref|ZP_03392301.1| ferrous iron transport protein B [Capnocytophaga sputigena Capno]
 gi|213953285|gb|EEB64625.1| ferrous iron transport protein B [Capnocytophaga sputigena Capno]
          Length = 721

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 70/194 (36%), Gaps = 25/194 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y I + G+ N GKS++FNAL         + PG T               +I D  G   
Sbjct: 28  YTIALAGNPNTGKSTVFNALTGL-RQHTGNWPGKTVTRAEGSFSFHDQRYRIIDLPGTYS 86

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
                E E + R F+     D+ +++ +  S+ E +    +  + I  K+ L     +E 
Sbjct: 87  LLSTSEDEEVARDFILFGKPDVTVIVVDA-SRLERNLSLALQILEITDKAVLCLNLMDEA 145

Query: 340 DHLI-------------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPS----H 376
                                  S+ T EG+ +L+  I+ ++S KF+    +       +
Sbjct: 146 RRHHITIDTRTLSRDLGIPVVATSARTKEGIPDLLFAIEEVVSGKFQTKKQTYIDLPKEN 205

Query: 377 KRHLYHLSQTVRYL 390
              +  L   +  L
Sbjct: 206 AEAIAELQSALSEL 219


>gi|17229610|ref|NP_486158.1| iron(II) transporter [Nostoc sp. PCC 7120]
 gi|17131209|dbj|BAB73817.1| iron(II) transporter [Nostoc sp. PCC 7120]
          Length = 206

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 33/176 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +I ++G  N GKS LFN L    V  V++ PGTT +V      +    + + DT G+   
Sbjct: 39  QIALVGMPNVGKSVLFNTLTGIYVT-VSNYPGTTVEVSRGLAQIGEQSITVIDTPGMYSL 97

Query: 281 DDIVEKEGIKRTFLEVE-------------------------NADLILLLKEINSKKEIS 315
             I E+E + R  L +E                          A L +LL        ++
Sbjct: 98  LPISEEEKVARDLLLLEPVAAVVHVVDAKNLGRMLPLTFQLIEAGLPILLA-------VN 150

Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                    +  + DL           +++   +G++EL ++I S+L  +   +P 
Sbjct: 151 MMDEAHRWGLDLQPDLLEMELGIPVVCMAAALNQGIDELRHRIASLLPVQVAMIPA 206


>gi|227810125|ref|ZP_03989038.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904705|gb|EEH90623.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 687

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I  +G+ N GK++LFNA    ++  V + PG T + +   +      +++ D  G   
Sbjct: 8   LTIGFIGNPNCGKTTLFNAYTGANLK-VANWPGVTVEKVEGAIRHHNMNIRLVDLPGTYS 66

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                 +E + R F+  +  D+++ + + ++ +                +      D+  
Sbjct: 67  LTSYTMEEIVSRKFILSDEVDVVINVVDASALERSLYLTLQLLELGKPVVMALNMMDIVE 126

Query: 334 TYTEEYDHLI------------SSFTGEGLEELINK 357
               E D               S+    GLE LI+ 
Sbjct: 127 KRGLEIDLHRLPEMLGIPVIPVSARKRRGLEVLIHA 162


>gi|186685335|ref|YP_001868531.1| small GTP-binding protein [Nostoc punctiforme PCC 73102]
 gi|186467787|gb|ACC83588.1| small GTP-binding protein [Nostoc punctiforme PCC 73102]
          Length = 448

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 14/163 (8%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           LK ++ +      L ++  N  +I   G  + GKS++ NAL    +     + G T+   
Sbjct: 42  LKPELEAL--NSTLNKLDSNVIRIAAFGLVSRGKSAVLNALLGDKILQTGPLNGVTQWPR 99

Query: 259 TIDLDLEGYLVK-ISDTAGIRETDDIVEKEGIK-RTFLEVENADLILLLK--EINSKKEI 314
           ++     G ++  + DT G+    D +E E         V  ADLIL +   +I   +  
Sbjct: 100 SVRWQPGGKVLVELIDTPGL----DEIEGESRADMAREVVHQADLILFVVSGDITRTEYQ 155

Query: 315 SFPK----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           +  +        I +  K DLY        +      G G  E
Sbjct: 156 ALLELRRSQKPLILVFNKIDLYPDTDRGAIYQNLQQLGAGHPE 198


>gi|310133116|ref|XP_003121071.1| PREDICTED: putative GTP-binding protein 6-like, partial [Homo
           sapiens]
          Length = 285

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 97/273 (35%), Gaps = 27/273 (9%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK---LGEII 216
                + H+   + +       E       + +      ++  +     +          
Sbjct: 1   NLKRDVAHLYRGVGSRYIMGSGESFMQLQQRLLREKEAKIRKALDRLRKKRHLLCRQRTR 60

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIV-TDIPGTTRDVLTIDLDLEGYLVKI-SDT 274
           R    I ++G++N GK++L  AL   D AI   D    T DV      L   +  +  DT
Sbjct: 61  REFPVISVVGYTNCGKTTLIKALTG-DAAIQPRDQLFATLDVTAHAGTLPSRMTVLYVDT 119

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---------------EISFPKN 319
            G          E    T  +V ++DLIL +++++  +               ++  P  
Sbjct: 120 IGFLSQLPHGLIESFSATLEDVAHSDLILHVRDVSHPEAELQKCSVLSTLRGLQLPAPLL 179

Query: 320 IDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
              + +  K DL   Y  TE     +S+  G GL+EL  ++ + +     +   ++    
Sbjct: 180 DSMVEVHNKVDLVPGYSPTEPNVVPVSALRGHGLQELKAELDAAVLKATGRQILTL---- 235

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
           R     +Q     + A++ E D   +  A ++R
Sbjct: 236 RVRLAGAQLSWLYKEATVQEVDVIPEDGAADVR 268


>gi|299143528|ref|ZP_07036608.1| Fe2+ transport system protein B [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518013|gb|EFI41752.1| Fe2+ transport system protein B [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 688

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 7/130 (5%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +N   I +LG  N GKS+LFNAL       V + PG T +        +G    + D  G
Sbjct: 10  KNAPLIGLLGQPNTGKSTLFNALTGA-RQHVGNWPGKTVEKKEGSFKYKGKAYTLLDLPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSD 330
                   E+E I R  +   + DL+  L + +  +   F            + +    D
Sbjct: 69  TYSLSANSEEELITRRNIIGNDIDLVFALVDASQLERSMFLLSEIVGIKQPVVVLLNMVD 128

Query: 331 LYSTYTEEYD 340
           +  +   E +
Sbjct: 129 VAKSQGREIN 138


>gi|284161273|ref|YP_003399896.1| ferrous iron transporter B [Archaeoglobus profundus DSM 5631]
 gi|284011270|gb|ADB57223.1| ferrous iron transport protein B [Archaeoglobus profundus DSM 5631]
          Length = 565

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ ++G+ N GK++L NAL   +   V + PG T +       ++G  V   D  GI  
Sbjct: 1   MKVALVGNPNVGKTALINALTGGNFT-VGNFPGVTVEKKEGKARIDGKEVIFIDLPGIYS 59

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGT------ 327
                  E + R FL  E  DLIL +   ++ +   +         I  I +        
Sbjct: 60  LQPRSIDEKVARDFLVKERPDLILNVVNASNLERNLYLTLELTDFGIPMIVVLNMVDIAK 119

Query: 328 ------KSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
                 +SD  S           +  G G++ L  +I
Sbjct: 120 NRGIRIRSDKLSEILGVPVVETVASKGIGIDRLKEEI 156


>gi|237729106|ref|ZP_04559587.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908835|gb|EEH94753.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 426

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIL 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+      +   + ++G++NAGKS+LFN + +  V    D    T
Sbjct: 173 QIQSRLEKVEKQREQGRQSRKKADVPTVSLVGYTNAGKSTLFNQITEAQV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADFRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +++  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIEAVDTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWVSAQTGIGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|149278349|ref|ZP_01884487.1| GTP-binding protein HflX [Pedobacter sp. BAL39]
 gi|149231115|gb|EDM36496.1| GTP-binding protein HflX [Pedobacter sp. BAL39]
          Length = 297

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 3/131 (2%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + Q  S + ++ + + L  +    I +    +    G   ++ ++G++N GKS++ N L+
Sbjct: 165 ETQIESDRRMILEKISLLKERLKLIDKQNETQRKNRGQLIRVALVGYTNVGKSTIMNMLS 224

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K +V    +    T D     + +E     +SDT G          E  K T  EV  AD
Sbjct: 225 KSEV-FAENKLFATLDTTVRKVVIENLPFLLSDTVGFIRKLPHHLVECFKSTLDEVREAD 283

Query: 301 LILLLKEINSK 311
           +++ + +++  
Sbjct: 284 ILIHVVDVSHP 294


>gi|170723842|ref|YP_001751530.1| GTP-binding proten HflX [Pseudomonas putida W619]
 gi|169761845|gb|ACA75161.1| GTP-binding proten HflX [Pseudomonas putida W619]
          Length = 433

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 106/297 (35%), Gaps = 27/297 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGMRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFNAL + DV    D    T
Sbjct: 174 QIKSRLEKVRSQREQARRGRRRADIPSVSLVGYTNAGKSTLFNALTESDV-YAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L+    + ++DT G          E  + T  E  N+DL+L + + +  + 
Sbjct: 233 LDPTLRRLQLDDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDAHEPER 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +               + +  + +  K DL      +             +S+  G GLE
Sbjct: 293 MEQIEQVLAVLGEIGAEGLPILEVYNKLDLLEDVEPQIQRNADGKPERVWVSARDGRGLE 352

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            +   I  +L +       ++   +R     +Q      + S    + G  +++  L
Sbjct: 353 LVGQAIAELLGDDL--FVGTLCLEQRFARLRAQFFDLGAVQSEEHDEEGRSLLSVRL 407


>gi|302037922|ref|YP_003798244.1| putative GTP-binding protein HflX [Candidatus Nitrospira defluvii]
 gi|300605986|emb|CBK42319.1| putative GTP-binding protein HflX [Candidatus Nitrospira defluvii]
          Length = 463

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 105/311 (33%), Gaps = 27/311 (8%)

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
            +   I S     R   ++     L+ L  +  +                  E       
Sbjct: 153 GVIIEIFSRHARTRAARLQVEIARLNYLAPRLRETGGGSERQGGGVGGKGAGETSLELDK 212

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           + + +    L+ ++++   + +     R     + ++G++NAGKSSL  A+   +V +V 
Sbjct: 213 RRIRDRTKELRAELAAIGDEHQTRRARREHELTVALVGYTNAGKSSLMRAMTGSEV-LVA 271

Query: 249 DIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           D    T D     L  E    V +SDT G  +          K T  E  +A L+L + +
Sbjct: 272 DKLFATLDTTIRPLYPETRPKVLLSDTVGFIKKLPHDLVASFKSTLDEAASASLLLFVVD 331

Query: 308 INS---KKEISFPK---------NIDFIFIGTK-----SDLYSTYTEEYD--HLISSFTG 348
            +    + ++   +         ++  + +  K      D  +    EY    L+S+   
Sbjct: 332 ASDPSFRSQLEVTRKVLAEVGATDVPSLLVLNKRDRLGPDELTALKAEYPDAVLLSTRNK 391

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           E L+ L  +I     +        IP   + +    +         +  ++   + +   
Sbjct: 392 EDLQALRERIMGYFESDMIDEELRIPFTAQGVVAEIRA-----RMRILSEEYDAEGLTIR 446

Query: 409 LRLASVSLGKI 419
           +R    +L  I
Sbjct: 447 VRSTPENLAAI 457


>gi|186894522|ref|YP_001871634.1| HSR1-like GTP-binding protein [Yersinia pseudotuberculosis PB1/+]
 gi|186697548|gb|ACC88177.1| GTP-binding protein HSR1-related [Yersinia pseudotuberculosis
           PB1/+]
          Length = 295

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 84/216 (38%), Gaps = 19/216 (8%)

Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246
              + +      L+  +   ++Q     ++     I I+G +  GKSS+ NAL + DV  
Sbjct: 9   LIRRHLRRYPHALRQHLIKELNQ-----LVTYEPVIGIMGKTGVGKSSMCNALFRGDVCA 63

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           V  +   TR    I L    + + + D  G+ E     E+   +     +   D++L + 
Sbjct: 64  VNAVEACTRQPQRIRLRFGSHYLTLIDLPGVGENQQRDEEY-RELYRELMPQLDMVLWVL 122

Query: 307 EINSKK--------EISFPKN----IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
           + + +         +  F ++       ++I  + D  +   E+++   +  +   +E +
Sbjct: 123 KADDRAFSVEEQFYQAVFAQHPGSLPPVLWILNQVD-KTEPAEQWNWPSAQPSATQVEHI 181

Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
           + K K++           +P   +  YHL + V  +
Sbjct: 182 VQKKKAVARQMGITESCVLPVSVKGRYHLPRLVEAI 217


>gi|120437448|ref|YP_863134.1| HflX-like GTP-binding protein [Gramella forsetii KT0803]
 gi|117579598|emb|CAL68067.1| HflX-like GTP-binding protein [Gramella forsetii KT0803]
          Length = 407

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 82/217 (37%), Gaps = 16/217 (7%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L  +    I +    +    G   ++ ++G++N GKS+L N ++
Sbjct: 161 ETEIETDRRIVRDKISLLKNKLKVIDKQMEVQRGNRGQLVRVALVGYTNVGKSTLMNVIS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K DV    +    T D     + +      +SDT G          E  K T  EV  AD
Sbjct: 221 KSDV-FAENKLFATLDTTVRKVVIRNLPFLLSDTVGFIRKLPTQLVESFKSTLDEVREAD 279

Query: 301 LILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           L+L + +I+                     +   I +  K D Y     + D LI+  T 
Sbjct: 280 LLLHVVDISHPNFEDHIDSVNKILTEIETLDKPTIMVFNKIDSYEAEKIDEDDLITERTS 339

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
                L +  K+ ++     + F    +K ++    +
Sbjct: 340 AHYS-LKDWKKTWMNRMGDNVLFISALNKENMEEFRK 375


>gi|48477308|ref|YP_023014.1| GTP binding protein [Picrophilus torridus DSM 9790]
 gi|48429956|gb|AAT42821.1| GTP binding protein [Picrophilus torridus DSM 9790]
          Length = 359

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G+ N GKSSL N L  K  + V +   TT  ++   ++  G  ++I D  GI +  
Sbjct: 63  VALVGYPNVGKSSLLNKLTNK-KSEVGNFAFTTLTIVPGTMNYRGAQIQILDLPGIIDNA 121

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN-IDFIFIGTK 328
            +    G +     V NADLIL++ +  +K              +  K
Sbjct: 122 ALGAGRGRE-VLAAVRNADLILIVTDPETKGLDRIKSELYKAGIVLNK 168


>gi|307267481|ref|ZP_07548966.1| ferrous iron transport protein B [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917495|gb|EFN47784.1| ferrous iron transport protein B [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 681

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 89/252 (35%), Gaps = 43/252 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    I + G+ N+GK++LFN L       V + PG T +     L  EG  + + D  G
Sbjct: 10  RRELVIALAGNPNSGKTTLFNDLTGS-RQHVGNWPGVTVEKKEGKLKFEGVDINVVDLPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSD 330
                   E E + R F+  +  D+++ + +  + +            N + +      D
Sbjct: 69  TYSLGAYTEDEVVARNFIIYDKPDVVVNVVDATNLERNLYLTMQLLEMNANVVLALNMYD 128

Query: 331 LYSTYTEEYDHLISSF------------TGEGLEELINKIKSILS---------NKFKKL 369
                  + D    S                G++EL+  +  +           +  K++
Sbjct: 129 EAKAKGIQIDVEKLSKLLKIPVIPTVATKNVGIKELLQAVLKVYESKEKEVYKVDYGKEI 188

Query: 370 PFSIPSHKRHLYHLSQ-TVRYLE---MASLNEKDCGL--------DIIAENLRLASVSLG 417
              I   K+ +      T R+L       L E D  +        DI+++ L+ +   L 
Sbjct: 189 EEEIDKLKKLIEKEENLTKRFLARWLAVKLLENDENIIKEIENYKDILSQ-LKESKKYLE 247

Query: 418 KITGCVDVEQLL 429
           ++ G     ++L
Sbjct: 248 EVLGEDA--EIL 257


>gi|213416844|ref|ZP_03349988.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 377

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 95/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 65  RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 123

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D    T
Sbjct: 124 QIQSRLEKVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNQIT-EARVYAADQLFAT 182

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 183 LDPTLRRIDVADVGETVLADTVGFIRHLPYDLVAAFKATLQETRQATLLLHVVDAADVRV 242

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ +G G+ 
Sbjct: 243 QENIEAVNTVLEEIDAHEIPTLMVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQSGVGIP 302

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +   +   R  ++  Q + 
Sbjct: 303 QLFQALTERLSGEVAQHTLRLLPQEGRLRSRFYQLQAIE 341


>gi|210623584|ref|ZP_03293910.1| hypothetical protein CLOHIR_01860 [Clostridium hiranonis DSM 13275]
 gi|210153454|gb|EEA84460.1| hypothetical protein CLOHIR_01860 [Clostridium hiranonis DSM 13275]
          Length = 436

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 78/219 (35%), Gaps = 27/219 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAK- 241
               + +LN    ++ ++       +     R   N   + ++G++NAGKS+L N L K 
Sbjct: 174 EIDKRHILNRAADIRAELKLVKKNRETQRNQRKKSNIPIVALVGYTNAGKSTLLNELIKT 233

Query: 242 ------KDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFL 294
                 +    V D+   T DV      L       + DT G          +  K T  
Sbjct: 234 HKEYESEKEVFVKDMLFATLDVTLRKAVLPNKRDFLVVDTVGFVSKLPHDLVDAFKSTLE 293

Query: 295 EVENADLILLLKEI-NSKKEISF-----------PKNIDFIFIGTKSDLYS----TYTEE 338
           EV  ADLIL + +  N   EI               +   I +  K D          ++
Sbjct: 294 EVNYADLILHVIDATNDSYEIQKKTTEKVLKELGADDKKTILVYNKVDKLELDIYPKNQD 353

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
               IS+  G  +++L+N I+  +      +   IP  +
Sbjct: 354 DVVYISAKQGINMDKLLNMIEKAVMENTYDVELLIPYDR 392


>gi|121535867|ref|ZP_01667665.1| ferrous iron transport protein B [Thermosinus carboxydivorans Nor1]
 gi|121305532|gb|EAX46476.1| ferrous iron transport protein B [Thermosinus carboxydivorans Nor1]
          Length = 614

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 79/206 (38%), Gaps = 31/206 (15%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           EI     KIV++G+ N GKS  FNAL    V  V++ PGTT D+        G  V + D
Sbjct: 11  EIPEGAKKIVLVGNPNVGKSVFFNALTGMYV-DVSNFPGTTVDISYGRF---GKDVVL-D 65

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE--------------INSKKEISFPKN 319
           T G+       ++E + R    +  ADLIL + +              I++   +    N
Sbjct: 66  TPGVYGISSFNDEERVAR--DVILAADLILNVVDAVHLERDLFLTLQVIDTGIPVIVAVN 123

Query: 320 IDF----IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +        I    DL             +  G+GLEE+ N++      +   +P ++  
Sbjct: 124 MMDEAAKQGIHVDIDLLEHLLGVPVIPTVAVKGKGLEEVKNRLYEA---RIGNIPAAL-- 178

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCG 401
            KR L  +         A L  +   
Sbjct: 179 -KRDLQEMLNRAGTWAEALLILEGDP 203


>gi|15803092|ref|NP_289123.1| GTP-binding protein Era [Escherichia coli O157:H7 EDL933]
 gi|12516983|gb|AAG57681.1|AE005487_5 GTP-binding protein [Escherichia coli O157:H7 str. EDL933]
          Length = 301

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 22/189 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N L  + ++I +    T    +        Y     DT G+  E 
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTXXHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYS 333
              + +   K     + + +L++ + E        E+   K        I    K D   
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +   H               IS+ TG  +  +   ++  L       P    + +  
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGLNVATIAAIVRKHLPEATHHFPEDYITDRSQ 190

Query: 380 LYHLSQTVR 388
            +  S+ +R
Sbjct: 191 RFMASEIIR 199


>gi|289422706|ref|ZP_06424546.1| GTP-binding protein HflX [Peptostreptococcus anaerobius 653-L]
 gi|289156885|gb|EFD05510.1| GTP-binding protein HflX [Peptostreptococcus anaerobius 653-L]
          Length = 436

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 84/221 (38%), Gaps = 27/221 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAK--- 241
             + +LN    ++ ++   +   ++    R   KI    ++G++NAGKS+L N L K   
Sbjct: 176 DKRHILNRAAAIRKELKEVVKHREIQRSQRQKNKIPIVALVGYTNAGKSTLLNELIKTHP 235

Query: 242 ----KDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
               +    V D+   T DV      L       + DT G          E  K T  EV
Sbjct: 236 DYEAEKGVFVKDMLFATLDVTLRRALLPNKREFLLVDTVGFVSKLPHDLIEAFKSTLEEV 295

Query: 297 ENADLILLLKEINSKKEISFPKNID------------FIFIGTKSDLYS----TYTEEYD 340
             ADLIL + +  ++         D             I +  K D  +      ++E  
Sbjct: 296 NYADLILHVIDATNESSDIQKHTTDSVLKDLGADEKATITVYNKIDRLNLDIYPKSQEDL 355

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
             +S+  G  L++L+  I+  L+    ++   +P  K  ++
Sbjct: 356 VYVSAKQGINLDKLVKLIEKKLTEDSYEVNLLLPYDKGQIF 396


>gi|257087298|ref|ZP_05581659.1| GTP-binding protein [Enterococcus faecalis D6]
 gi|256995328|gb|EEU82630.1| GTP-binding protein [Enterococcus faecalis D6]
 gi|315025847|gb|EFT37779.1| GTP-binding protein HflX [Enterococcus faecalis TX2137]
          Length = 413

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 76/198 (38%), Gaps = 18/198 (9%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259
             ++++H  + +        ++I ++G++NAGKS++ N L         D    T D LT
Sbjct: 176 LKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG-TYSEDQLFATLDPLT 234

Query: 260 IDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
               L  G  V ++DT G  +       E  + T  E    DL+L + + ++   +   +
Sbjct: 235 KKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLLHVVDASAPDRLQHER 294

Query: 319 ------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFTGEGLEELINKIKSIL 362
                       NI  + +  K D   +     T   + LIS+   E  E L+  I++ +
Sbjct: 295 TVQTLIKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKIPEDKERLVQAIRAQM 354

Query: 363 SNKFKKLPFSIPSHKRHL 380
               +     I      L
Sbjct: 355 MELLEPYQLEISPTDGQL 372


>gi|220906201|ref|YP_002481512.1| GTP-binding protein HSR1-like [Cyanothece sp. PCC 7425]
 gi|219862812|gb|ACL43151.1| GTP-binding protein HSR1-related [Cyanothece sp. PCC 7425]
          Length = 469

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 15/163 (9%)

Query: 192 VLNDILFLKNDISSHISQ--GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
                L L+  +  H  Q      ++ +   +IV LG  + GKS++ NAL  + V     
Sbjct: 33  HRQQHLHLQPQLQPHWDQLEALNSKLHQRLLQIVTLGLVSRGKSAVLNALYGEKVFPTGP 92

Query: 250 IPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-- 305
           + G T+   +I        + +++ DT G+ E       E           ADLIL +  
Sbjct: 93  LHGVTQWPRSIRWHWPESCWQIELIDTPGLDEIAGEARAEM---ALTIARQADLILFVTS 149

Query: 306 -----KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343
                 EIN+   ++       + I  KSDLY   T    H  
Sbjct: 150 GELTPIEINTLLTLADIPK-PLLLIFNKSDLYPDQTAARLHNC 191


>gi|57505277|ref|ZP_00371206.1| ferrous iron transport protein B [Campylobacter upsaliensis RM3195]
 gi|57016413|gb|EAL53198.1| ferrous iron transport protein B [Campylobacter upsaliensis RM3195]
          Length = 669

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 21/197 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I+++G  N GKSSL NAL K ++  V + PG T +  +  +  + Y ++  D  G   
Sbjct: 4   INIILVGQPNVGKSSLINALCKSNLK-VGNFPGVTVEKASAKIVYKNYTLEFIDLPGTYA 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYS 333
            D   E+E I + +++ +N DLI+ + +  + K                I     SD   
Sbjct: 63  LDGYSEEEKITQNYIKTQNYDLIINILDSTNLKRNLILSTQLLECQKKMILALNMSDEAK 122

Query: 334 TYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                 D              ISS T E L  L++ I  I +++    PF  P  ++   
Sbjct: 123 KEGFSIDVKKLEELIKTPSISISSRTKENLNALLDLI--IQTHEAAFTPFLRPYGEQLEE 180

Query: 382 HLSQTVRYLEMASLNEK 398
            L++  + +E  +LNE 
Sbjct: 181 ELAKIQQDIEKLNLNEN 197


>gi|225848880|ref|YP_002729044.1| ferrous iron transporter B [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643217|gb|ACN98267.1| ferrous iron transport protein B [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 711

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 19/164 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GKS+L NA++  D+  V + PG T + L        Y ++  D  G+  
Sbjct: 4   ITVALVGNPNVGKSALLNAISGSDIK-VGNWPGVTVEKLEATFIYNDYKIRFIDLPGVYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
             +   +E I   FL  E  D+IL + +  + +             I  +      D   
Sbjct: 63  LRNQTAEEKITIEFLLKERPDVILNVVDATNLRRNLYLTFQLLELEIPMVVALNIWDEAV 122

Query: 334 TYTEEYDH------------LISSFTGEGLEELINKIKSILSNK 365
                 D+              S+    G+++L+ KI     NK
Sbjct: 123 EKGIIIDYEKMSKLLCCPVIPTSAKNKTGIDQLLEKIVETYENK 166


>gi|34557761|ref|NP_907576.1| putative ferrous iron transport protein B [Wolinella succinogenes
           DSM 1740]
 gi|34483478|emb|CAE10476.1| PUTATIVE FERROUS IRON TRANSPORT PROTEIN B [Wolinella succinogenes]
          Length = 759

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 27/189 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI +LG  N GKS+LFN L+     I  + PG T D  +    L    V++ D  GI  
Sbjct: 7   LKIALLGQPNCGKSTLFNTLSGAKQHI-ANYPGVTVDKKSAYFRLGDQEVELIDLPGIYS 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYS 333
                 +E +   +L  E  DLIL + + ++          +    I  + +   +D+  
Sbjct: 66  LSTFSPEERVSLAYLREEKPDLILNIIDASNPLKGLYLTTQAMEFKIPVLLVLNMADV-- 123

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393
                         G G    +  +++ L          I  + R      + +  ++ A
Sbjct: 124 ------------AKGRGYRYDLEALEAQLGIG------VILCNARQKSEKKRILDAIQEA 165

Query: 394 SLNEKDCGL 402
             ++    +
Sbjct: 166 LKSDAPTPI 174


>gi|16330732|ref|NP_441460.1| hypothetical protein sll0804 [Synechocystis sp. PCC 6803]
 gi|1653224|dbj|BAA18140.1| sll0804 [Synechocystis sp. PCC 6803]
          Length = 453

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 71/197 (36%), Gaps = 15/197 (7%)

Query: 186 NFSSKEVLNDILFLKNDISS-HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +++    L     ++ DI + H +  KL + +   +KI   G  + GKS++ NAL  +  
Sbjct: 30  HWNYPPNLELQGAVRQDIQAMHQALAKLEQRV---FKIAAFGLVSRGKSTVINALLGEKR 86

Query: 245 AIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
                + G T+   ++         + + DT G+ E                   ADLIL
Sbjct: 87  LETGPLHGVTQWPQSVRWCSNDKIQIDLIDTPGLDEIAGGARAAM---AQTVAHQADLIL 143

Query: 304 LLKEINSKK------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-SSFTGEGLEELIN 356
            +   +  +      +         + +  K DLY    ++       S T +G +  I 
Sbjct: 144 FVIAGDITQTEFTALQTLRQAQKPLLLVFNKIDLYPEQDQQQIFAQLQSLTPDGEDSPIF 203

Query: 357 KIKSILSNKFKKLPFSI 373
             + I+    +  P  +
Sbjct: 204 SAEDIVLVAAEPPPIMV 220


>gi|317058993|ref|ZP_07923478.1| GTP-binding protein hflX [Fusobacterium sp. 3_1_5R]
 gi|313684669|gb|EFS21504.1| GTP-binding protein hflX [Fusobacterium sp. 3_1_5R]
          Length = 602

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 33/223 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + +  +I FLK ++ +      +    R      KI ++G++N GKS+L N LA +
Sbjct: 335 EIDRRRIRENISFLKKELENIKKTRSVQREKRENSNIPKIALVGYTNVGKSTLRNLLAAE 394

Query: 243 --------DVAIVTDIPGTTRDVLTIDLDLEGYLVK-ISDTAGIRETDDIVEKEGIKRTF 293
                   +     ++   T D  T  + L+   +  ++DT G          E  K T 
Sbjct: 395 YNPNSNTKEDVFAENMLFATLDTTTRTILLDDKRLISLTDTVGFIRKLPHDLIEAFKSTL 454

Query: 294 LEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYS-----TYT 336
            EV  +DLIL + + +S++ +S  +            N   I +  K DL          
Sbjct: 455 EEVIFSDLILHVVDSSSEEALSQMEAVYQVLEELQCQNKKNILVLNKCDLARPEQILAIR 514

Query: 337 EEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           E+Y H+    IS+   + +E L+ +IK  L    K   + IP 
Sbjct: 515 EKYSHITAVEISAKEHKNIEFLLEEIKKELPQNTKTCTYLIPY 557


>gi|118444403|ref|YP_877886.1| GTP-binding protein [Clostridium novyi NT]
 gi|118134859|gb|ABK61903.1| GTP-binding protein [Clostridium novyi NT]
          Length = 594

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 102/272 (37%), Gaps = 33/272 (12%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++++  +    +  +   L  L G     L+   + I       ++ ++     +E + 
Sbjct: 280 RAKSKEAKIQVELAQLKYRLPRLIG-MGAVLSRTGAGIGTRGPGEKKLEIDKRHIRERIY 338

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA---------KKDVA 245
           D+      I  +    +      N  KI ++G++NAGKS+L N L           K+  
Sbjct: 339 DLNKELAKIKKNRQVQREKRSKDNVPKISLVGYTNAGKSTLRNKLCEIASPKDVVDKETV 398

Query: 246 IVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
              D+   T DV T  L L    LV ++DT G          E  K T  EV N+DL+L 
Sbjct: 399 FEADMLFATLDVTTRALVLPDNRLVTLTDTVGFIRKLPHDLVEAFKSTLEEVVNSDLLLH 458

Query: 305 LKEINSKKEISFPK------------NIDFIFIGTKSD---------LYSTYTEEYDHLI 343
           + + +SK      +            N   I +  K D         L   +       I
Sbjct: 459 VVDSSSKDAYKQIEAVNFVLEELESINKPMILLLNKIDKADKEQLEGLKEKFNNLKVLEI 518

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           S+     L+ L+N I + L N  KK+ F IP 
Sbjct: 519 SAKDNLNLDTLLNDICTALPNPLKKVEFLIPY 550


>gi|55379046|ref|YP_136896.1| GTP-binding protein [Haloarcula marismortui ATCC 43049]
 gi|55231771|gb|AAV47190.1| GTP-binding protein [Haloarcula marismortui ATCC 43049]
          Length = 331

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 66/163 (40%), Gaps = 16/163 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   IV+ G+ N GKSS  N + + D  I +  P TT  +     + +    ++ DT G+
Sbjct: 167 NEPAIVVAGYPNVGKSSFVNRVTRADNEIAS-YPFTTTQIRVGHFEDQRIRYQLVDTPGL 225

Query: 278 RETDDIVEKEGIKRTFLEVEN-ADLILLLKEINS------------KKEISFPKNIDFIF 324
            +       E   +    +E+ AD +L+  + +             +  I    ++  + 
Sbjct: 226 LDRPPEDRNEIESQAVSALEHLADAVLVFIDPSGECGYPLADQLELRNAIEARFDVPVLT 285

Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
           I  KSDL +    E DH +S    + ++ ++      +  + +
Sbjct: 286 IANKSDLSTDV--EADHYMSVTEDDNVDGVLQAAIDAVDYELE 326


>gi|289548001|ref|YP_003472989.1| ferrous iron transporter B [Thermocrinis albus DSM 14484]
 gi|289181618|gb|ADC88862.1| ferrous iron transport protein B [Thermocrinis albus DSM 14484]
          Length = 643

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 31/221 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GK+SL N +A   +  V + PG T +     +    Y +   D  GI  
Sbjct: 4   VLVALVGNPNVGKTSLLNHIAGTTL-RVGNWPGVTVEKREGKIFYGDYEITFVDLPGIYT 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS--------------KKEISFPKNIDFIFI 325
            + + E E I   FL+ E  DLI+ + E  +               K +    N+    +
Sbjct: 63  LEPVSEDEQIAYHFLKEEKVDLIINVIEAPNMERDLFLTAQLMELGKPMVIALNMWDEAL 122

Query: 326 GTKSDLYSTYTEEYDHLISSFT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
               D+ ++  +E   L    T    GEG+++L+  +   + +  +  P           
Sbjct: 123 RLGIDIDTSRMQELLGLPVVKTNGRKGEGVKDLLEAVVRAIESDLRPFPLPYLRTPLQDQ 182

Query: 382 HLSQTVRYLEMASLNEKDCGLDI------IAENLRLASVSL 416
            L    R L  A         ++      +++++  A   +
Sbjct: 183 ELRD--RRLGFA----HGLYTEVVKRRSTVSQDITEALDRI 217


>gi|260576289|ref|ZP_05844281.1| GTP-binding protein Era [Rhodobacter sp. SW2]
 gi|259021557|gb|EEW24861.1| GTP-binding protein Era [Rhodobacter sp. SW2]
          Length = 314

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 25/206 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 16  RAGF-VALIGEPNAGKSTLLNKMVGAKVSIVTHKVQTTRARIRGVAMEGAAQIVFVDTPG 74

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEIS-----FPKNIDFIFI 325
           +      +++  +   +    +AD+++LL E        +K  I       P+       
Sbjct: 75  LFRPRRRLDRAMVAAAWGGAADADVVVLLIEAHRGLTEGTKAIIDAMRDRIPRGQTVALA 134

Query: 326 GTKSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
             K D         L +   E +      +IS+  G G+++L   + + L       P  
Sbjct: 135 INKIDRVKAEVLLGLSAQMNEAFPFAETFMISAEKGYGVDKLKAWLATQLPEGPWFYPED 194

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEK 398
             +        S+  R      L+E+
Sbjct: 195 QIADLPLRMIASEVTREKLTLRLHEE 220


>gi|312793776|ref|YP_004026699.1| small gtp-binding protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180916|gb|ADQ41086.1| small GTP-binding protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 609

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 21/165 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G+ N GKS +FN L  + V  V++ PGTT DV             I DT G+    
Sbjct: 21  IALVGNPNVGKSVIFNKLTGRYV-EVSNYPGTTVDVNYGFY----KDYVIVDTPGVYGIS 75

Query: 282 DIVEKEGIKR-----TFLEVENADLI-----LLLKE--INSKKEISFPKNIDFIFIGT-- 327
              ++E + R     T   +   D +     L L +  I+ +KE+    N+         
Sbjct: 76  SFNDEEIVTRDIVLSTQKIINVVDSVHLDRDLFLTQQLIDYQKEVIVVLNMVDEVEKNNI 135

Query: 328 KSDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
           K D+              S+  G G+++L   I   L  K +  P
Sbjct: 136 KIDIEKLKEILGVEVIATSASKGLGIDKLKEAIDKNLFKKGRITP 180


>gi|300868233|ref|ZP_07112864.1| GTP-binding protein, HSR1-related [Oscillatoria sp. PCC 6506]
 gi|300333757|emb|CBN58048.1| GTP-binding protein, HSR1-related [Oscillatoria sp. PCC 6506]
          Length = 539

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 82/205 (40%), Gaps = 24/205 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           + +  +  + ++ +    N + +H S+ +     R    I I+G++NAGKS+L N L   
Sbjct: 329 ETERRAIAKRISRLQQEVNQLQAHRSRMRQQRQHREVPSIAIVGYTNAGKSTLLNVLTNA 388

Query: 243 DVA----IVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +V     +   +  TTR  V+   +  E   + ++DT G          +  + T  EV 
Sbjct: 389 EVYTADQLFATLDPTTRRLVIADAVTEESLSIVLTDTVGFIHELPPALIDAFRATLEEVT 448

Query: 298 NADLILLLKEINSKKEISFPKNIDFIF------------IGTKSDLYS-----TYTEEYD 340
           +AD +L + +++     S  +++  I                K D           EE+ 
Sbjct: 449 DADALLHVVDLSHPAWHSQIRSVMTILTEMPVTPGPALVAFNKIDRVDGDTLRQAQEEFP 508

Query: 341 H--LISSFTGEGLEELINKIKSILS 363
               IS+    GLE L  ++  ++ 
Sbjct: 509 QAVFISAAKALGLETLRQRLAQLIY 533


>gi|332158597|ref|YP_004423876.1| GTP-binding protein [Pyrococcus sp. NA2]
 gi|331034060|gb|AEC51872.1| GTP-binding protein [Pyrococcus sp. NA2]
          Length = 186

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 69/177 (38%), Gaps = 38/177 (21%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT---IDLDLEGY--------- 267
            K+ I+G  N GKS+L NAL     + V++ PGTT+  +      + L            
Sbjct: 2   IKVAIIGAENVGKSTLMNALLGGKFSEVSETPGTTKGTIRRVFGKIKLPKTMKNPFGGAD 61

Query: 268 LVKISDTAGIRETD-----DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------- 313
            + + DTAG+ + +      ++ +E  K    E+ NAD+I+ + +               
Sbjct: 62  ELVLIDTAGLFDPEKEVRGKVLSEEKFKELIREITNADIIIHMIDATKGLHRGMEKLHYL 121

Query: 314 ISFPKNIDFIFIGTKSDLYSTYT------------EEYDHLISSFTGEGLEELINKI 358
           + F      I +  K DL                 E+   L+S  T EG  +L+  +
Sbjct: 122 LKFRYEKPIIVVINKIDLVPREKVEELRKIVKKRLEQEPILLSLVTYEGFNDLLKAL 178


>gi|291278852|ref|YP_003495687.1| ferrous iron transport protein B [Deferribacter desulfuricans SSM1]
 gi|290753554|dbj|BAI79931.1| ferrous iron transport protein B [Deferribacter desulfuricans SSM1]
          Length = 645

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 79/190 (41%), Gaps = 20/190 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
           YK++++G+ N GKS+LF  L KK  A V++ PGTT  +     ++   + V+  DT G  
Sbjct: 6   YKVLLVGNPNVGKSALFYNLTKK-YASVSNYPGTTVSIFKGKTNIGPHHEVEFIDTPGFY 64

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS------FPKNIDFIFIGTKSDLY 332
             + I E+E + +  +   + D IL + +  +   +           +  I +    D  
Sbjct: 65  NFNTITEEEKVTKDIILQNDYDCILHVVDAKNIARMLPLTFQFIEAGLPTILVLNMYDEL 124

Query: 333 STYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                E +               ++   +G E L+ +I S++  ++   P +I       
Sbjct: 125 ECQGMEINITHLEHDLGIPVVKTAAIKNKGTENLMARILSVVEGRYNFQPINIKYSNNIE 184

Query: 381 YHLSQTVRYL 390
             + + ++ L
Sbjct: 185 QLIEKIIKQL 194


>gi|78189141|ref|YP_379479.1| GTP-binding protein HflX [Chlorobium chlorochromatii CaD3]
 gi|78171340|gb|ABB28436.1| GTP-binding protein HflX [Chlorobium chlorochromatii CaD3]
          Length = 431

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 118/301 (39%), Gaps = 32/301 (10%)

Query: 135 ISSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           I +++   +    +  +   L  L G W    TH+        +    E       + V 
Sbjct: 119 IRAQSTQAKMQVELAQLEYILPRLSGAW----THLSKQKGGIGNKGPGETQIETDRRLVR 174

Query: 194 NDILFLKNDISSHISQ-GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           N I  LK  +     Q        +N  ++ ++G++NAGKS+L NAL  +  A   +   
Sbjct: 175 NRIALLKKKLREVERQHYTRTRSRQNVSRVSLVGYTNAGKSTLMNALCPQAEAFAENRLF 234

Query: 253 TTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS- 310
            T D  T  L+L+   LV +SDT G          E  K T  EV  AD +L + +I+  
Sbjct: 235 ATLDTKTRRLELKINKLVLLSDTVGFIRKLPHTLVESFKSTLDEVLQADFLLHVIDISHP 294

Query: 311 --KKEISFPKN---------IDFIFIGTKSD------LYSTYTEEYDH--LISSFTGEGL 351
             +++I+  ++            I +  K D      L     ++Y +   IS+  G  L
Sbjct: 295 SFEEQIAVVRDTLREIGVQHDQIIEVFNKIDALEEPTLLREMGDKYPNAVFISAVRGINL 354

Query: 352 EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410
             L   I   L+  + +    +  S+ R + +L     + E+     +D  +++   ++R
Sbjct: 355 SLLKEIIGEQLARDYTERHVRLHVSNYRLISYL---YDHTEVVEKKHEDEMVEL-TIHVR 410

Query: 411 L 411
            
Sbjct: 411 N 411


>gi|219852271|ref|YP_002466703.1| ferrous iron transport protein B [Methanosphaerula palustris E1-9c]
 gi|219546530|gb|ACL16980.1| ferrous iron transport protein B [Methanosphaerula palustris E1-9c]
          Length = 662

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 68/164 (41%), Gaps = 19/164 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y + + G++N GKS+ FN L   D  I+ + PG T +     L  +G+ +++ D  GI  
Sbjct: 23  YTVALAGNANVGKSATFNQLTGVDQ-IIGNWPGKTVERAEGLLVHKGHRIRVIDLPGIYS 81

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPK-NIDFIFIGTKSDLYS 333
                 +E + R F+ +E+ D ++ + + ++ +      I   +     +    + DL  
Sbjct: 82  FSTYSMEELVSREFIALEHPDAVVNVIDASALERNLFFTIQLMELAPPLMIAVNQIDLAE 141

Query: 334 TYTEEYD------------HLISSFTGEGLEELINKIKSILSNK 365
                 D                +  G+G+  L + I  ++ ++
Sbjct: 142 KKGLTIDVEKLSSILGVPVVPTVAIRGKGISPLTDAILDLVHDR 185


>gi|189424844|ref|YP_001952021.1| ferrous iron transporter B [Geobacter lovleyi SZ]
 gi|189421103|gb|ACD95501.1| ferrous iron transport protein B [Geobacter lovleyi SZ]
          Length = 713

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
                + + G+ NAGKS+L NA+A      V + PG T +      D++G  +++ D  G
Sbjct: 4   HKPLVVAVAGNPNAGKSTLINAIAGS-RLHVGNWPGVTVEKKEALFDVDGRSIRLVDLPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
                   ++E I R +L  E  DLI+ + +  + +
Sbjct: 63  CYSLSPYSQEEIITRDYLVTEKPDLIINVVDATNLE 98


>gi|87302572|ref|ZP_01085389.1| ferrous iron transport protein B [Synechococcus sp. WH 5701]
 gi|87282916|gb|EAQ74873.1| ferrous iron transport protein B [Synechococcus sp. WH 5701]
          Length = 602

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL--DLEGYLVKISDTAGI 277
            ++ +LG  N GKS+L+N L     A V + PG T ++L   L  D  G    + D  GI
Sbjct: 7   VQVALLGLPNTGKSTLYNKLTGGH-AHVANWPGLTVELLRGSLPADAAGRPYDLIDLPGI 65

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISF---PKNIDFIFIGTKSDL 331
            +     E E + R FL     DL +++      +++  ++       +  I      D 
Sbjct: 66  HDLRGSSEDEAVVRRFLSATRPDLAVVVLNASHADTQLRLALELQATGLPLILALNMGDE 125

Query: 332 YSTYTEEYDHLI------------SSFTGEGLEELINKI 358
              Y    DH              S+  GEGL+ L+ +I
Sbjct: 126 AQRYGVRIDHQRLAADLGLPVLVISARRGEGLDTLLERI 164


>gi|56695595|ref|YP_165946.1| GTP-binding protein Era [Ruegeria pomeroyi DSS-3]
 gi|56677332|gb|AAV93998.1| GTP-binding protein Era [Ruegeria pomeroyi DSS-3]
          Length = 301

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 75/205 (36%), Gaps = 24/205 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRTRIRGVAMEGEAQIVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           + +    +++  +   +    +AD+++L+ E +           +      K        
Sbjct: 63  LFQPRRRLDRAMVAAAWGGAADADIVVLMIEAHRGITEGVERILEGLAEIAKGRTVALAI 122

Query: 327 TKSD-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D             L + +      +IS+  G G+E+L   + + L       P   
Sbjct: 123 NKIDRVPAEKLLGLSEALNARFEFARTFMISAERGHGVEDLRKWLAAELPESPWLYPEDQ 182

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            +        ++  R      L+++
Sbjct: 183 IADLPMRMIAAEITREKLTLRLHQE 207


>gi|257452452|ref|ZP_05617751.1| GTP-binding protein hflX [Fusobacterium sp. 3_1_5R]
          Length = 594

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 33/223 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + +  +I FLK ++ +      +    R      KI ++G++N GKS+L N LA +
Sbjct: 327 EIDRRRIRENISFLKKELENIKKTRSVQREKRENSNIPKIALVGYTNVGKSTLRNLLAAE 386

Query: 243 --------DVAIVTDIPGTTRDVLTIDLDLEGYLVK-ISDTAGIRETDDIVEKEGIKRTF 293
                   +     ++   T D  T  + L+   +  ++DT G          E  K T 
Sbjct: 387 YNPNSNTKEDVFAENMLFATLDTTTRTILLDDKRLISLTDTVGFIRKLPHDLIEAFKSTL 446

Query: 294 LEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYS-----TYT 336
            EV  +DLIL + + +S++ +S  +            N   I +  K DL          
Sbjct: 447 EEVIFSDLILHVVDSSSEEALSQMEAVYQVLEELQCQNKKNILVLNKCDLARPEQILAIR 506

Query: 337 EEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           E+Y H+    IS+   + +E L+ +IK  L    K   + IP 
Sbjct: 507 EKYSHITAVEISAKEHKNIEFLLEEIKKELPQNTKTCTYLIPY 549


>gi|229031948|ref|ZP_04187935.1| GTP-binding protein era [Bacillus cereus AH1271]
 gi|228729412|gb|EEL80402.1| GTP-binding protein era [Bacillus cereus AH1271]
          Length = 266

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +D P TTR+ +          V   DT GI +    +    +K     ++  D++L +  
Sbjct: 2   SDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVN 61

Query: 308 I----NSKKEISFPK----NIDFIFIGTKSD---------LYSTYTEEYDH----LISSF 346
                   +E    K          +  K D         L   Y + +D      IS+ 
Sbjct: 62  AVEGFGRGEEFIIEKLKETKQPVFLVINKIDQLHPEQLLELIDQYRKLHDFAEIVPISAL 121

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            G  ++ LI  IK  L    +  P +  +     + +++ +R
Sbjct: 122 DGNNVDALIGTIKKYLPEGPQYYPDNQVTDHPERFIIAELIR 163


>gi|298492787|ref|YP_003722964.1| small GTP-binding protein ['Nostoc azollae' 0708]
 gi|298234705|gb|ADI65841.1| small GTP-binding protein ['Nostoc azollae' 0708]
          Length = 506

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 110/254 (43%), Gaps = 30/254 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDI--SSHISQGKLGE--IIRNGYKIVILGHSNAGKSSLFNA 238
           D  + + + V   +  +++++   + +S+ K  E  + R   ++V+ G  ++GK+SL NA
Sbjct: 91  DAASSTLQAVRQQVAQIQDEVTRQALLSRTKEIEANLARGEIQVVVFGTGSSGKTSLVNA 150

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETD-DIVEKEGIKRTFLE 295
           +  + V  V    GTT+   T  L L+G    + I+DT GI E      E+E + R    
Sbjct: 151 IIGRMVGEVNAPMGTTQVGETYCLRLKGLERKILITDTPGILEAGVAGTEREQLARAL-- 208

Query: 296 VENADLILLLKEINSKKEISFPKN------IDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
              ADL+L + + + ++    P           + I  K+DLY    +E           
Sbjct: 209 ATEADLLLFVVDNDLRRSEYEPLKGLAEIGKRSLLILNKTDLYIQDDQEAI--------- 259

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKR-----HLYHLSQTVRYLEMASLNEKDCGLDI 404
            L +L  +++  +++       + P   +          +  V  L   +   +  G D+
Sbjct: 260 -LSKLRQRVREFIASNDVVAIAANPQPAKLETGETFQAEADIVPLLRRMACVLRAEGEDL 318

Query: 405 IAENLRLASVSLGK 418
           +A+N+ L S+ LG+
Sbjct: 319 VADNILLQSLRLGE 332


>gi|305665676|ref|YP_003861963.1| GTP-binding protein HflX [Maribacter sp. HTCC2170]
 gi|88710434|gb|EAR02666.1| GTP-binding protein HflX [Maribacter sp. HTCC2170]
          Length = 403

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 15/166 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ ++G++N GKS+L N ++K DV    +    T D     + +      +SDT G   
Sbjct: 200 VRVALVGYTNVGKSTLMNVISKSDV-FAENKLFATLDTTVRKVVIGNLPFLLSDTVGFIR 258

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNI---------DFIFIGT 327
                  E  K T  EV  ADL+L + +I+    ++ I    NI           I +  
Sbjct: 259 KLPTQLVESFKSTLDEVREADLLLHVVDISHPNFEEHIESVNNILAEIKSADKKTIMVFN 318

Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D Y   T + D LI+  T +     I + K     +  +    I
Sbjct: 319 KIDQYKHETIDDDDLITERTSKHFT--IEEWKRTWMQRMGENALFI 362


>gi|322376981|ref|ZP_08051474.1| GTP-binding protein HflX [Streptococcus sp. M334]
 gi|321282788|gb|EFX59795.1| GTP-binding protein HflX [Streptococcus sp. M334]
          Length = 412

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 99/266 (37%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNTLTSKTQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E ++ DL++ + + ++      
Sbjct: 236 TTKSIHLGGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKHVDLLVHVIDASNPYHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTE-----EYDHLISSFTGEGLEEL-INKI 358
            K            +I  + +  K+DL   +T            S  + E L+ L + KI
Sbjct: 296 EKTVLSIMKDLDMEDIPRLTLYNKADLVEDFTPTQTPYALISAKSEDSRENLQALFLEKI 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K+I  +   ++ FS       L  ++
Sbjct: 356 KNIFESFTLRVSFSKSYKIHDLESVA 381


>gi|313888096|ref|ZP_07821770.1| GTP-binding protein HflX [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845786|gb|EFR33173.1| GTP-binding protein HflX [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 429

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 35/222 (15%)

Query: 195 DILFLKNDISSHISQGKLGE----------IIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           D   LK +I     + +  +          I  N   + ++G++NAGKS++ N L  ++ 
Sbjct: 171 DRRRLKREIDKIKEKLEKAKRTRDTTRERRIDSNIPIVSLVGYTNAGKSTILNRLKDEES 230

Query: 245 AIVT--DIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
             V+  ++   T D  +    L  G    ISDT G          E  K T  E++ +DL
Sbjct: 231 GEVSVKNMLFETLDPSSRKARLLSGREFIISDTVGFVSKLPTKIVEAFKSTLEEIKYSDL 290

Query: 302 ILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYT--------EEYD 340
           IL + + +S+             K+I    + + I +  K D    Y          +  
Sbjct: 291 ILHVIDASSEDLEIQYNTTMAILKDIEVL-DKNIITVFNKVDRVDLYDINLPLRVMPDKK 349

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
             IS+   E ++ L+  I+  L  K+  +      +   L +
Sbjct: 350 VYISALKDENMDSLLKIIEDNLDEKYFDVKLKFAYNDTDLLY 391


>gi|294500848|ref|YP_003564548.1| GTP-binding protein HflX [Bacillus megaterium QM B1551]
 gi|294350785|gb|ADE71114.1| GTP-binding protein HflX [Bacillus megaterium QM B1551]
          Length = 416

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 19/228 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             +  +++I      + SH  + +      + Y+I I+G++NAGKS++FN L   +  I 
Sbjct: 165 HIRRKIDEIKRQLKTVVSHRERYRERRKRNHVYQIAIVGYTNAGKSTIFNRLT--EAGIF 222

Query: 248 -TDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             +    T D  T    L  G    ++DT G  +          + T  EV  ADL+L +
Sbjct: 223 EENQLFATLDPTTRQYTLPSGLTALLTDTVGFIQDLPTTLVAAFRSTLEEVTEADLVLHV 282

Query: 306 KEINSKKEISFPK------------NIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEG 350
            + ++    +  K            +I  + +  K D+       +      +S+F    
Sbjct: 283 VDSSNPDYNNHEKTVHRLLEELNVTDIPMLTVYNKEDMQHELFVPSASTSLSMSAFKAAD 342

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           L +L  +I+  +  +       +P+++  +    +TV  +E    NE+
Sbjct: 343 LVKLGERIQEEMKKEMAFFHVLLPAYEGKMLAELKTVSIVESLKFNEE 390


>gi|58337996|ref|YP_194581.1| GTP-binding protein [Lactobacillus acidophilus NCFM]
 gi|227902827|ref|ZP_04020632.1| GTP-binding protein [Lactobacillus acidophilus ATCC 4796]
 gi|58255313|gb|AAV43550.1| GTP-binding protein [Lactobacillus acidophilus NCFM]
 gi|227869490|gb|EEJ76911.1| GTP-binding protein [Lactobacillus acidophilus ATCC 4796]
          Length = 421

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 92/232 (39%), Gaps = 27/232 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
             + + +   I  +K ++ +  SQ ++    RN     K+ ++G++NAGKS+  N L ++
Sbjct: 162 ELNRRTIGKQISAIKKELKAVASQEEIKSARRNQSRIPKVALVGYTNAGKSTTMNGLLRE 221

Query: 243 -------DVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFL 294
                      V ++   T D     +DL+  +   +SDT G          E  K T  
Sbjct: 222 FSKEGSDKEVFVKNMLFATLDTSVRRIDLKDNFSFILSDTVGFISKLPHNLVESFKATLQ 281

Query: 295 EVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTY---TEEY 339
           E  +ADL++ + + +    +               K I  I    K+D         E  
Sbjct: 282 ETRDADLLINVVDASDPNMVQMIRTTQNVLDEIGVKGIPMITAYNKADKTDRNYPQIEGS 341

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYL 390
           D L S+   + ++ L + I   + + + K   ++P    + L +L +  + L
Sbjct: 342 DILYSATDPKSIKLLADLITKRVFSDYGKFNLTLPLSAGKELAYLHENAQIL 393


>gi|254243112|ref|ZP_04936434.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126196490|gb|EAZ60553.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 175

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 20/135 (14%)

Query: 321 DFIFIGTKSDLYST---YTEEYD-----HLISSFTGEGLEELINKIKSIL-SNKFKKLPF 371
               I  K+DL +      E  D     H + + +  GLE L   +K+ +   + +   F
Sbjct: 46  KVTLIRNKADLSTESIGLEESADGHVTHHPLGAHSALGLELLREHLKACMGFEQTRGKRF 105

Query: 372 SIPSHKRHLYHLSQTVR-YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV----- 425
             PS      +  Q  R  +  A L     G +++AE+LR A   LG+ITG         
Sbjct: 106 QRPSGATWKRYAWQGRRWSMATAQLIHNGAG-ELLAEDLRQAQQHLGEITGAFTPRRPAG 164

Query: 426 EQLLDIIFSKFCIGK 440
             LL      FCIGK
Sbjct: 165 SHLL----RGFCIGK 175


>gi|332705323|ref|ZP_08425401.1| small GTP-binding protein domain protein [Lyngbya majuscula 3L]
 gi|332355683|gb|EGJ35145.1| small GTP-binding protein domain protein [Lyngbya majuscula 3L]
          Length = 523

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 99/250 (39%), Gaps = 28/250 (11%)

Query: 186 NFSSKEVLNDILFLKNDIS--SHISQGKLGEII--RNGYKIVILGHSNAGKSSLFNALAK 241
             + K V   +  +++++S  + + + +  E I  R    +V+ G  +AGK+SL NAL  
Sbjct: 92  EETLKAVRQQVKQIQDEVSRQAMLRRSEEIEAILSRGELLVVVFGTGSAGKTSLVNALIG 151

Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
           + V  V    GTT    T  L L+G    + I+DT GI E+  +V  +  +        A
Sbjct: 152 RMVGQVGAPMGTTEVGETYKLKLKGLERPILITDTPGILESG-VVGTQREQWARHLATEA 210

Query: 300 DLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
           DL+L + + +         E         + +  K DLY+    E            L  
Sbjct: 211 DLLLFVVDNDLRHSEYDPFEKLAQIGKRSLLVFNKIDLYTEQDSERV----------LAR 260

Query: 354 LINKIKSILSN----KFKKLPFSIPSHKRHLYHLS-QTVRYLEMASLNEKDCGLDIIAEN 408
           L  +++  +           P  +      L     + +  +   +   +  G ++IA+N
Sbjct: 261 LRQRVRGFIPASDVVAIAANPQPVTLENGQLCQPEPEILPLIRRLAAVLRAEGEELIADN 320

Query: 409 LRLASVSLGK 418
           + L S  LG+
Sbjct: 321 ILLQSQRLGQ 330


>gi|311747504|ref|ZP_07721289.1| ferrous iron transport protein B [Algoriphagus sp. PR1]
 gi|126574864|gb|EAZ79235.1| ferrous iron transport protein B [Algoriphagus sp. PR1]
          Length = 708

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 32/213 (15%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI I+G+ N GKS++FN L   +  I  + PG T D     ++ EG   +I D  G    
Sbjct: 14  KIAIIGNPNVGKSTIFNQLTGLNQKI-GNYPGVTVDKKIGWMNFEGSTYEIVDLPGTYSL 72

Query: 281 DDIVEKEGIK-RTFLEVE---NADLILLLKEINSKKEISFPK------NIDFIFIGTKSD 330
               E E I  R    ++     D +L++ +        F         I    +   +D
Sbjct: 73  YPNSEDEIIAHRVLNHIDKEKRPDYVLMVIDSCQLSRGLFLATQLIDLGIQLAIVLNMAD 132

Query: 331 LYSTYTEEYDHLIS---------SFTGEGLEELINKIKSILSNKFKKLPFSIPS------ 375
           L S    E  +            S    G++ L ++IK+++ +K   +  S  +      
Sbjct: 133 LASKNNLEIRNYEIYKSLGVPILSTDARGIKGL-DQIKTLIHDKNFSIESSYLNISEIIP 191

Query: 376 -----HKRHLYHLSQTVRYLEMASLNEKDCGLD 403
                  R  + L    R  +M     KD  +D
Sbjct: 192 QALLKPIREKFELRNDYRAYQMLRFGPKDRSID 224


>gi|309790674|ref|ZP_07685225.1| small GTP-binding protein [Oscillochloris trichoides DG6]
 gi|308227268|gb|EFO80945.1| small GTP-binding protein [Oscillochloris trichoides DG6]
          Length = 175

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 66/173 (38%), Gaps = 19/173 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ N GKS++FNAL       V + PG T +     L L  +   I D  G   
Sbjct: 4   LTIALAGNPNVGKSTVFNALTG-MRQHVGNWPGKTVERKEGQLTLGTHTATIVDLPGTYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                 +E I R F+  E  D ++ + ++ + +             +  + +    D+  
Sbjct: 63  LTARSLEEQIARDFIIRERPDAVVNVLDVANLERNLYLTAQLLEMEVPLVLVLNMVDVAD 122

Query: 334 TYTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
               + D             ++++  G+G++EL   +  ++++   +    I 
Sbjct: 123 ARGLKLDQPALAAALGVPVVMMAASRGQGMDELKRVLSQLIASAPAQARGGIA 175


>gi|301023688|ref|ZP_07187440.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|299880731|gb|EFI88942.1| conserved hypothetical protein [Escherichia coli MS 196-1]
          Length = 138

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSKK 312
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + + 
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRA 128


>gi|298245801|ref|ZP_06969607.1| GTP-binding proten HflX [Ktedonobacter racemifer DSM 44963]
 gi|297553282|gb|EFH87147.1| GTP-binding proten HflX [Ktedonobacter racemifer DSM 44963]
          Length = 433

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 23/220 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQG--KLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKK 242
               + + + I  L+ +I    SQ   +  + +  G  +V ++G++NAGKS+LFNAL + 
Sbjct: 176 ELDRRRIRSRISALRKEIEEARSQRALQRKQRVAQGLPVVAVVGYTNAGKSTLFNALTEA 235

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D    T D +T  L L       +SDT G  +          + T  EV  ADL
Sbjct: 236 GV-LAEDKLFATLDPVTRRLLLPNNQEALLSDTVGFIQKLPTQLIAAFRATLEEVIEADL 294

Query: 302 ILLLKEINSKKEISFPKNIDFIF------------IGTKSDLYSTYTE------EYDHLI 343
           +L + +I+ +      + +  I                K DL +           +   I
Sbjct: 295 LLEVVDISHENAFEQSETVHDILDELGAAAKPRVTALNKIDLLTDPDALDPSLYSHAVPI 354

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           S+  G+GLEEL  ++ S+L++  ++L   +P  +  L  L
Sbjct: 355 SAAEGKGLEELCAEVASVLADTMEQLTVLLPFSRGDLVEL 394


>gi|317010763|gb|ADU84510.1| GTP-binding protein Era [Helicobacter pylori SouthAfrica7]
          Length = 301

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127

Query: 333 S-----TYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY             S+   + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQQYAPQFLSLVPLSAKKSQNLNALLECISEHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR 388
                 + +R
Sbjct: 188 MRDIYKEIIR 197


>gi|325105759|ref|YP_004275413.1| GTP-binding protein HflX [Pedobacter saltans DSM 12145]
 gi|324974607|gb|ADY53591.1| GTP-binding protein HflX [Pedobacter saltans DSM 12145]
          Length = 410

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 14/174 (8%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
           E       + + N +  LK  + +   Q     +  +   ++ ++G++N GKS++ N L+
Sbjct: 175 ESQIESDRRMINNKVALLKEKLKTIDKQNLTQRKNRKEMVRVALVGYTNVGKSTIMNMLS 234

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K +V    +    T D     + +E     +SDT G          E  K T  E   AD
Sbjct: 235 KSEV-FAENKLFATLDTTVRKVVIENVPFLLSDTVGFIRKLPHHLVECFKSTLDETREAD 293

Query: 301 LILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHL 342
           +++ + +I+        +            + + I +  K D Y     E + +
Sbjct: 294 ILIHVVDISHPNFEDHIRTVNETLKDLGVIDKETITVFNKIDAYQGVEAEQEWM 347


>gi|302380327|ref|ZP_07268797.1| GTP-binding protein HflX [Finegoldia magna ACS-171-V-Col3]
 gi|302311817|gb|EFK93828.1| GTP-binding protein HflX [Finegoldia magna ACS-171-V-Col3]
          Length = 415

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 110/293 (37%), Gaps = 29/293 (9%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T+    ++ +      L  L G + D L+     I        + +V   + ++ ++
Sbjct: 109 RAKTKQSVLQVELAEYKYRLPRLIG-FRDHLSRTGGGIGTRGPGETKLEVDRRTIQKKID 167

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVT 248
           +I      I       +   +  +   + ++G++NAGKS+L N L         +     
Sbjct: 168 NIKRELKSIDKSQDNMRKQRLKSDIKMVSMVGYTNAGKSTLSNKLVNFYKDKYTEEFETE 227

Query: 249 DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           D+   T D       L       + DT G  +       E  K T L+++++DLIL + +
Sbjct: 228 DLLFKTLDTTLRKCTLPNKKQCLVIDTVGFIKDIPTDLIEAFKSTLLDLKHSDLILFVLD 287

Query: 308 INSK-------------KEISFPKNIDFIFIGTKSD----LYSTYTEEYDHLISSFTGEG 350
            +S              KE+          +  KSD    +   Y  +    IS+F  E 
Sbjct: 288 SSSSDLDNQITTTMDILKELKVLDKSMVT-VFNKSDKNPNVIFPYNLDNKIKISAFNDED 346

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRH-LYHLSQTVRYLEMASLNEKDCGL 402
           +E+L+ KI+  L   +K +      + +  L  + Q  +  E  S N  D  L
Sbjct: 347 IEKLLYKIQEELYGNYKCVNMKFDYNHQDVLNAVLQNFKC-ENVSYNNDDVSL 398


>gi|269469210|gb|EEZ80744.1| GTPase [uncultured SUP05 cluster bacterium]
          Length = 438

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 96/294 (32%), Gaps = 26/294 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W   L   +  I        + +         + +I    + +   
Sbjct: 133 LAQLRHLSTRLVRGWTH-LERQKGGIGLRGPGETQLETDKRLIAVRIKNITKRLDKVHKQ 191

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
              G+   +      I + G++NAGKS+LFNAL K +V     +  T    +   +    
Sbjct: 192 RDLGRKSRVKSELPMIALAGYTNAGKSTLFNALTKAEVFADDRLFATLDSTIRRVILPAS 251

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------- 315
               I+DT G  +          K T  E   A+++L + + + +  +            
Sbjct: 252 GEAVIADTVGFIQDLPHELVAAFKSTLEETRRANVLLHVVDASDEYNLEKIDQVEDIINE 311

Query: 316 -FPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNK 365
                I  I +  K D    +    D           IS+  G+G++ L   +   LS  
Sbjct: 312 IDANKIPSILVMNKIDRLENFKPRIDRDKDGRIYRVWISAQNGDGIDLLYQTLAEQLSGM 371

Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419
             +    +  +  ++      + Y+    +++           + + +  L K+
Sbjct: 372 MTRAKIQLDVNAAYIRSEIHNIGYIHNEKVDDFGQ----WILEINVTNHYLSKL 421


>gi|94677008|ref|YP_589008.1| GTP-binding protein hflX [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94220158|gb|ABF14317.1| GTP-binding protein hflX [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 427

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 29/230 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAI 246
             + + N +  +K  ++    + + G   R     I+++G++NAGKS+LFN++ +  V  
Sbjct: 164 DRRLLRNRMNTIKLRLAKVERRREQGRYARASIPTILLVGYTNAGKSTLFNSITEASV-D 222

Query: 247 VTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
           V D   TT D     L++     + ++DT G  +          K T  E + A L+L +
Sbjct: 223 VADKLFTTLDPTLKRLNIPTIGNIVLADTVGFIQHLPHHLVASFKSTLQETQQAKLLLHI 282

Query: 306 KE---------INSKKEISFPKNIDFI---FIGTKSDLYSTYTEEYD---------HLIS 344
            +         I++ K++    N + I    +  K D    +    D           +S
Sbjct: 283 VDATDQCINIKIDAVKKVLVEINANHISTLLVMNKIDQLDNFIPRIDRNTDNEPVRVWLS 342

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSI-----PSHKRHLYHLSQTVRY 389
           +   +G+  L+  +  +L  K K + +++      S  R L++  Q +  
Sbjct: 343 AQNADGITLLMQALSELLIRKHKIIRYNLRLPPQASRLRSLFYQLQAIEQ 392


>gi|16330625|ref|NP_441353.1| GTP-binding protein HflX [Synechocystis sp. PCC 6803]
 gi|1653117|dbj|BAA18033.1| GTP-binding protein; HflX [Synechocystis sp. PCC 6803]
          Length = 534

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 62/340 (18%), Positives = 122/340 (35%), Gaps = 62/340 (18%)

Query: 70  PSPESFTGEDSAE-----FHVHGGIAVV------NGILEELAKMPNLRLANPGE-----F 113
           P P++  GE   E         G   VV         +  L +   +R+ +  E     F
Sbjct: 216 PHPQTVVGEGKVEELALAVQTTGANLVVFDRDLSAAQVRNLEQRCGVRVIDRTELILDIF 275

Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
           ++RA    +   L+ E                 +  +   L  L G+    ++ +   I 
Sbjct: 276 AQRA--QSRAGKLQVE-----------------LAQLEYLLPKLVGR-GQGMSRLGGGIG 315

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
                  + + +  + +  +  +    N++ SH S+ +     +    + I+G++NAGKS
Sbjct: 316 TRGPGETKLETERRTIQSRIAKLQKQVNELQSHRSRLRNQRQQQAVPTVAIVGYTNAGKS 375

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG------YLVKISDTAGIRETDDIVEKE 287
           +L NAL + D+    D    T D  T  L L        + + ++DT G          +
Sbjct: 376 TLLNALTQADI-YAADQLFATLDPTTRRLSLLDPENQTYHPILLTDTVGFIHKLPDALVD 434

Query: 288 GIKRTFLEVENADLILLLKEINS---KKEISFPKNI---------DFIFIGTKSDLYSTY 335
             + T  EV  ADL+L + +++    +++I+   NI           + +  K D   + 
Sbjct: 435 AFRATLEEVTEADLLLQVVDLSDRAWRRQIASVANILAEMPLATAPMVMVFNKIDQVPSE 494

Query: 336 TEEY-------DHLISSFTGEGLEELINKIKSILSNKFKK 368
                         +++  G GLE L  ++   +      
Sbjct: 495 ALAAAQADYPEAIFLAAAQGIGLETLKKRLLEQILTDLTD 534


>gi|228993042|ref|ZP_04152965.1| GTP-binding protein era [Bacillus pseudomycoides DSM 12442]
 gi|228999092|ref|ZP_04158674.1| GTP-binding protein era [Bacillus mycoides Rock3-17]
 gi|229006640|ref|ZP_04164274.1| GTP-binding protein era [Bacillus mycoides Rock1-4]
 gi|228754501|gb|EEM03912.1| GTP-binding protein era [Bacillus mycoides Rock1-4]
 gi|228760709|gb|EEM09673.1| GTP-binding protein era [Bacillus mycoides Rock3-17]
 gi|228766690|gb|EEM15330.1| GTP-binding protein era [Bacillus pseudomycoides DSM 12442]
          Length = 266

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +D P TTR+ +          V   DT GI +    +    +K     ++  D++L +  
Sbjct: 2   SDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVN 61

Query: 308 I----NSKKEISFPK----NIDFIFIGTKSD---------LYSTYTEEYDH----LISSF 346
                   +E    K          +  K D         L   Y + ++      IS+ 
Sbjct: 62  AAEGFGRGEEFIIEKLQETKQPVFLVINKIDQVHPEQLLELIDQYRKLHEFAEIVPISAL 121

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            G  +E LI  IK  L    +  P +  +     + +++ +R
Sbjct: 122 DGNNVEALIGAIKKYLPEGPQYYPDNQVTDHPERFIIAELIR 163


>gi|312877864|ref|ZP_07737811.1| small GTP-binding protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795368|gb|EFR11750.1| small GTP-binding protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 609

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 21/165 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G+ N GKS +FN L  + V  V++ PGTT DV             I DT G+    
Sbjct: 21  IALVGNPNVGKSVIFNKLTGRYV-EVSNYPGTTVDVNYGFY----KDYVIVDTPGVYGIS 75

Query: 282 DIVEKEGIKR-----TFLEVENADLI-----LLLKE--INSKKEISFPKNIDFIFIGT-- 327
              ++E + R     T   +   D +     L L +  I+ +KE+    N+         
Sbjct: 76  SFNDEEIVTRDIVLSTQKIINVVDSVHLDRDLFLTQQLIDYQKEVIVVLNMVDEVEKNNI 135

Query: 328 KSDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
           K D+              S+  G G+++L   I   L  K +  P
Sbjct: 136 KIDIEKLKEILGVEVIATSASKGLGIDKLKEAIDKNLFKKGRITP 180


>gi|196228260|ref|ZP_03127127.1| small GTP-binding protein [Chthoniobacter flavus Ellin428]
 gi|196227663|gb|EDY22166.1| small GTP-binding protein [Chthoniobacter flavus Ellin428]
          Length = 283

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 74/224 (33%), Gaps = 23/224 (10%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +  ++        +    +  +            I+G++NAGKSSL   L   DV I  D
Sbjct: 13  RTAIDRCKRELEQVRLSRATQRKDRKRAPVPNAAIVGYTNAGKSSLLRRLTGADVLI-ED 71

Query: 250 IPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
               T D  T  + L     + ++DT G          E    T  E   +D ++ L + 
Sbjct: 72  KLFATLDTTTRKIALPNKQPLLLTDTVGFVRKLPHRLVEAFNATLEEAALSDFLIHLLDA 131

Query: 309 NSKKEISF------------PKNIDFIFIGTKSDLYSTYTE--------EYDHLISSFTG 348
           +  + + +                  +    K D                    +S  TG
Sbjct: 132 SQPEVMEYYNTTMKVLAELGADAKRTLIAFNKIDKVGDSAALAGLRRHFPDAVFLSVHTG 191

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH-LSQTVRYLE 391
           EG+EEL+ ++   ++       F IP     L   L +  R LE
Sbjct: 192 EGIEELVERMAEFVATGMVTREFLIPQSAGSLLAQLHRQARILE 235


>gi|261856598|ref|YP_003263881.1| GTP-binding proten HflX [Halothiobacillus neapolitanus c2]
 gi|261837067|gb|ACX96834.1| GTP-binding proten HflX [Halothiobacillus neapolitanus c2]
          Length = 440

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 26/214 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + + + I  L++ I+    Q + G   R       + ++G++NAGKS+LFNAL  +
Sbjct: 164 EMDRRLIHDRIKQLQDRIAKVRRQRQEGRKTRQKSQVPMVSLVGYTNAGKSTLFNALT-E 222

Query: 243 DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
                 D    T D     L+   G  + ++DT G             + T  E   ADL
Sbjct: 223 AGTFAADQLFATLDTTLRRLEFAPGEPMVLADTVGFIRHLPHELVTAFRSTLEETLEADL 282

Query: 302 ILLLKEINSKKEISFPKNIDFIF------------IGTKSDLYSTYTEEYD--------- 340
           ++ + +  S +      +++ +             +  K D       E           
Sbjct: 283 LIHVVDAASPERDRQMTDVEVVLKEIGADTLPRLTVMNKIDQLEDRAPEISRNEAGEIDR 342

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             +S+ +G G++ L   +   L      +   +P
Sbjct: 343 VWMSAQSGAGMDLLRQALGERLRPTRTIINLFLP 376


>gi|254476279|ref|ZP_05089665.1| GTP-binding protein Era [Ruegeria sp. R11]
 gi|214030522|gb|EEB71357.1| GTP-binding protein Era [Ruegeria sp. R11]
          Length = 301

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 24/172 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQIVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           +      +++  +   +    +AD+++L+ E +           +      +        
Sbjct: 63  LFRPRRRLDRAMVAAAWGGAADADVVVLMVEAHRGITEGVERILEGLQDIGEGRRIALAI 122

Query: 327 TKSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNK 365
            K D         L     E YD     +IS+  G G++ L   +   L   
Sbjct: 123 NKIDRVQSEVLLGLTKDLNERYDFSETFMISAERGHGVDALRQWLAQELPEG 174


>gi|115375055|ref|ZP_01462325.1| GTPase [Stigmatella aurantiaca DW4/3-1]
 gi|310822174|ref|YP_003954532.1| GTP-binding protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367983|gb|EAU66948.1| GTPase [Stigmatella aurantiaca DW4/3-1]
 gi|309395246|gb|ADO72705.1| GTP-binding protein [Stigmatella aurantiaca DW4/3-1]
          Length = 459

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 79/214 (36%), Gaps = 22/214 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDV 244
               +++ + +  L+  +++     +     R +  ++ ++G++NAGKSSL  AL   +V
Sbjct: 205 ELDRRKIRDRLAELREGLAAIQQDQEQRRYARRDQLRVALVGYTNAGKSSLMRALTGSEV 264

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +V D    T D     L  E    V +SDT G  +          + T  E   A L+L
Sbjct: 265 -LVADQLFATLDTTVRALQPETRPRVLVSDTVGFIQKLPHDLVASFRSTLDEALEASLLL 323

Query: 304 LLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEEY-------DHLIS 344
            + + +     +              +++    +  K+D  S    E          ++S
Sbjct: 324 YVVDASDPTWEAQLEVTREVLRDIGAQSVPGKLLFNKADRLSAEAREALLQRHPEAIVLS 383

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           + + E +  L   +         +    IP  ++
Sbjct: 384 AHSPEDVAALRQSVLEFFERSMTEAELVIPYARQ 417


>gi|94496399|ref|ZP_01302976.1| GTPase [Sphingomonas sp. SKA58]
 gi|94424145|gb|EAT09169.1| GTPase [Sphingomonas sp. SKA58]
          Length = 444

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 97/278 (34%), Gaps = 43/278 (15%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E + ++ +  +  +   L   W   L   R          E +       + + + 
Sbjct: 125 AATNEGRLQVELAHLDYQAGRLVRSWTH-LERQRGGFGFLGGPGETQI--EADRRMIRDR 181

Query: 196 ILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  ++ ++        L    R       I ++G++NAGKS+LFN L   +V    D+  
Sbjct: 182 MAKIRRELDQVTRTRGLHRARRQRAPWPVIALVGYTNAGKSTLFNRLTGAEVM-AEDLLF 240

Query: 253 TTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D     + L G     +SDT G             + T  EV +ADLI+ +++I   
Sbjct: 241 ATLDPTMRQIALPGLDKAILSDTVGFVSDLPTQLIAAFRATLEEVLSADLIVHVRDIAHP 300

Query: 312 K-------------------EISFPKN------IDFIFIGTKSDLYS----------TYT 336
                               E +  +          I    K DL               
Sbjct: 301 DSDAQRDDVLDVLGELGVTGEAALERGEGTSEPPPIIEAWNKLDLLDADSMSLVREQAAR 360

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            E   ++S+ TGEG+++L   I   ++   K   FSIP
Sbjct: 361 REDVVILSALTGEGMDQLQRMISDHMTRGAKVYTFSIP 398


>gi|78485431|ref|YP_391356.1| small GTP-binding protein domain-containing protein [Thiomicrospira
           crunogena XCL-2]
 gi|78363717|gb|ABB41682.1| Conserved hypothetical protein with a GTPase domain [Thiomicrospira
           crunogena XCL-2]
          Length = 436

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 83/251 (33%), Gaps = 27/251 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W       +  I A      + +      +  +  +      +   
Sbjct: 130 LAQLKRMSTRLVKGWSH--LDRQGGIGARGPGETQLETDRRLVQGKIKQLEARIEKVRQQ 187

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            S G+      +   I I+G++NAGKS+LFN + +  V    D    T D     + L G
Sbjct: 188 RSLGRRSRKKSDLPTITIIGYTNAGKSTLFNQMTRASV-YAEDRLFATLDSTLRKVHLPG 246

Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------- 316
              V  +DT G             + T  E   ADL++ L +                  
Sbjct: 247 AGPVIFADTVGFIRHIPHDLVAAFRSTLEETSEADLLIHLVDAADPHRAEKMTDVEEVIK 306

Query: 317 ---PKNIDFIFIGTKSD-LYSTYTEEYD----------HLISSFTGEGLEELINKIKSIL 362
               +++  + +  K D L     + +             IS+   EG+E +++ + +  
Sbjct: 307 EVGAEDVPQLTVFNKIDRLKDPEVQPHVDLNDEGLPERVWISAKESEGIELMLDAVAAHF 366

Query: 363 SNKFKKLPFSI 373
             KF  +   +
Sbjct: 367 RGKFHTVELVL 377


>gi|237755489|ref|ZP_04584111.1| ribosome biogenesis GTP-binding protein YsxC [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692353|gb|EEP61339.1| ribosome biogenesis GTP-binding protein YsxC [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 197

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 10/123 (8%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT--A 275
           N  +I I+G SN GKSSL NA+ K+ +A V+  PG TR +    L+ + Y V +     A
Sbjct: 23  NKPEIAIVGRSNVGKSSLINAIFKRSIAKVSATPGKTRLINFFLLNDDIYFVDLPGYGFA 82

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT 327
            +   +    K  I+   L  EN +LI++L +            KE        +I +GT
Sbjct: 83  AVSHKEKQNWKRMIEDYLLNRENLNLIIMLVDTRYPPTNLDVLMKEWLESFEKPYIVVGT 142

Query: 328 KSD 330
           K D
Sbjct: 143 KID 145


>gi|170577269|ref|XP_001893946.1| MGC83645 protein [Brugia malayi]
 gi|158599735|gb|EDP37219.1| MGC83645 protein, putative [Brugia malayi]
          Length = 567

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 89/253 (35%), Gaps = 34/253 (13%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA----DLDFSEEEDVQNFSSK 190
           I ++T+  +            +       +L  +           LD SE+   +     
Sbjct: 145 IFAKTKEAKLQIQ-------LAEIPYIRQRLLSMYELHVDPSLLHLDTSEKSKAERLEVL 197

Query: 191 EVLNDILF--LKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIV 247
                 L   LK  +   ++  ++GE  +N    + + G++NAGKSSL   L  +++  V
Sbjct: 198 RYREQHLRKCLKAAVEEKVN-LRIGEAQKNIRTVVAVAGYTNAGKSSLIKRLTGRNL-YV 255

Query: 248 TDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
            D    T D       L  G  +  +DT G             + T   V NADL+L ++
Sbjct: 256 EDRLFATLDTSLHVFRLPSGLPILFADTIGFISNLPTQLLASFQATLNHVANADLLLHVE 315

Query: 307 EINSKKEISFPKNID---------------FIFIGTKSDLYSTYT--EEYDHLISSFTGE 349
           ++++   ++    +                 I +G K D        E   + +S   G 
Sbjct: 316 DVSNPDYLTQRNVVMKTLSALKIRNELLKSVIRVGNKIDKLCRLPPHESNTYFVSCADGR 375

Query: 350 GLEELINKIKSIL 362
           G  EL+  I   +
Sbjct: 376 GFVELLAAIDKRV 388


>gi|217034385|ref|ZP_03439800.1| hypothetical protein HP9810_889g30 [Helicobacter pylori 98-10]
 gi|216943180|gb|EEC22650.1| hypothetical protein HP9810_889g30 [Helicobacter pylori 98-10]
          Length = 301

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 73/190 (38%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           I ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   IALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQQYASQFLALVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR 388
                 + +R
Sbjct: 188 MRDIYKEIIR 197


>gi|83747953|ref|ZP_00944984.1| HflX [Ralstonia solanacearum UW551]
 gi|207723170|ref|YP_002253569.1| gtpase protein [Ralstonia solanacearum MolK2]
 gi|207743437|ref|YP_002259829.1| gtpase protein [Ralstonia solanacearum IPO1609]
 gi|83725371|gb|EAP72518.1| HflX [Ralstonia solanacearum UW551]
 gi|206588364|emb|CAQ35327.1| gtpase protein [Ralstonia solanacearum MolK2]
 gi|206594834|emb|CAQ61761.1| gtpase protein [Ralstonia solanacearum IPO1609]
          Length = 429

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 75/213 (35%), Gaps = 29/213 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + +      L  ++     Q       R   + + + ++G++NAGKS+LFNAL K 
Sbjct: 177 ELDRRMLDERAKRLSAELDRLQRQHDTQRRSRSRNDAFSVSLVGYTNAGKSTLFNALTKA 236

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
             A   +    T D  +  L LEG   V +SDT G             + T  E  +AD+
Sbjct: 237 -RAYAANQLFATLDTTSRRLYLEGLGNVVLSDTVGFIRDLPTQLVAAFRATLEETVHADV 295

Query: 302 ILLLKEINSKKEISFPKNIDF------------IFIGTKSDLYSTYTEEYD--------- 340
           +L + +  S  +    + +D             I +  K D       +           
Sbjct: 296 LLHVVDAASAVKHEQMEQVDRVLAEIDASGIPQILVMNKIDAAEELRAQGPRIERDETGA 355

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLP 370
                +S+  G GLE L   +        ++ P
Sbjct: 356 VRRVFVSALEGAGLELLREALVETAIRLRERPP 388


>gi|320094006|ref|ZP_08025831.1| GTP-binding protein [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979050|gb|EFW10568.1| GTP-binding protein [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 500

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 73/220 (33%), Gaps = 23/220 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + +   +  LK +I+      +     R       + I G++NAGKS+L N L   
Sbjct: 239 ELDRRRIRARMAKLKAEIARMEPARRTQRGARRRGGVPSVAIAGYTNAGKSTLLNRLTDA 298

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V +   +  T    +      +G    ++DT G          E  + T  EV  AD++
Sbjct: 299 GVLVEDALFATLDPTVRRARTADGREYTLTDTVGFVRNLPTQLVEAFRSTLEEVGAADVL 358

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEY-------DHL 342
           L + +                   I     +  +    K+DL +                
Sbjct: 359 LHVVDAAHPDPVSQVEAVRAVLSGIEGADRVPELIALNKADLATPEQLAVLRTAFPGSVA 418

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
           +S+ TG G+  L   ++ +L      +   IP     L H
Sbjct: 419 LSAKTGYGVGTLRAALEDLLPRPSVLIDAVIPYSAGSLVH 458


>gi|254779461|ref|YP_003057566.1| GTP-binding protein Era [Helicobacter pylori B38]
 gi|254001372|emb|CAX29357.1| GTP-binding protein era homolog [Helicobacter pylori B38]
          Length = 301

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 81/217 (37%), Gaps = 28/217 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAIGDAELRVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   L+         + S ++
Sbjct: 128 THKQVLQKLQEYQQYDSQFLALVPLSAKKSQNLNALLECISKHLNPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAENLR 410
                 + +R     +L      E D  +D   E  R
Sbjct: 188 MRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEER 224


>gi|253702353|ref|YP_003023542.1| ferrous iron transporter B [Geobacter sp. M21]
 gi|251777203|gb|ACT19784.1| ferrous iron transport protein B [Geobacter sp. M21]
          Length = 743

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 1/104 (0%)

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
             +    +     + + G+ N+GKS+L NA+A      V +  G T +     L+  G  
Sbjct: 19  DAEQQPALDRVITVAVAGNPNSGKSTLINAIAGT-RLHVGNWAGVTVEKKEAQLEYAGRK 77

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           +K+ D  G        ++E + R +L  E  DLI+ + +  + +
Sbjct: 78  IKLVDLPGTYSLSPYTQEEIVARDYLVHERPDLIINVVDATNLE 121


>gi|166363285|ref|YP_001655558.1| small GTP-binding protein [Microcystis aeruginosa NIES-843]
 gi|166085658|dbj|BAG00366.1| small GTP-binding protein [Microcystis aeruginosa NIES-843]
          Length = 454

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 15/167 (8%)

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
              +K D+ S   +  L ++     ++   G  + GKSS+ NAL  + V     + G TR
Sbjct: 42  QAAVKQDLQSL--KSALAKLDETVIRVAAFGLVSRGKSSVVNALVGQKVLATGPLHGVTR 99

Query: 256 DVLTIDLD--LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---- 309
              ++          +++ DT G+ E +               ++ADLIL +   +    
Sbjct: 100 WPRSVRWTPATGKIQIELIDTPGLDEIEGEARANM---AREVAKSADLILFIVAGDITRT 156

Query: 310 ---SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353
              +  E+   K    I +  K DLY               G   +E
Sbjct: 157 EYEALGELRRAKK-PIILVFNKIDLYPEADRRQIFQQLQRLGTNRDE 202


>gi|329895357|ref|ZP_08270982.1| GTP-binding protein HflX [gamma proteobacterium IMCC3088]
 gi|328922370|gb|EGG29714.1| GTP-binding protein HflX [gamma proteobacterium IMCC3088]
          Length = 428

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 102/288 (35%), Gaps = 24/288 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 115 RARTHEGKLQVELAQLQHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRARIK 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL   + +     QG+          + ++G++NAGKS+LFN L   DV    D    T
Sbjct: 174 SILARLDKVQRQRDQGRRSRKRAEIPTVSLVGYTNAGKSTLFNHLTDADV-YAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L+L+    V ++DT G          +    T  E  NA+L+ ++ +  S + 
Sbjct: 233 LDPTLRQLELDAIGQVILADTVGFIAHLPHKLVDAFNATLEETLNAELLCIVVDAASDQR 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTE-EYD-------HLISSFTGEGLEE 353
                             I  +++  K DL       E D         +S+ TG GL+ 
Sbjct: 293 DDNLHQVLDVLAEIGADKIPRLYVYNKLDLLEQEPRIERDADGVPERVWLSAKTGAGLDL 352

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           L+  +   L +       S+   +  L      +  +   + +E+ C 
Sbjct: 353 LLEAVAERLGDDMLNATISLKPEQGRLRASLYRMNAVMQEATDERGCS 400


>gi|85058316|ref|YP_454018.1| putative GTPase HflX [Sodalis glossinidius str. 'morsitans']
 gi|84778836|dbj|BAE73613.1| GTP-binding protein [Sodalis glossinidius str. 'morsitans']
          Length = 424

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 83/228 (36%), Gaps = 29/228 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + + N I  + + +     Q + G   R +   + ++G++NAGKS+LFN + +  V  
Sbjct: 163 DRRLLRNRISQILSRLEKVEKQREQGRRARADVPTVSLVGYTNAGKSTLFNRMTEAGV-Y 221

Query: 247 VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D    T D     +++       ++DT G             K T  E   A L+L +
Sbjct: 222 AADQLFATLDPTLRRINVGDVGDTVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHI 281

Query: 306 KEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLI 343
            +    +             EI    +I  + +  K DL   +    D           +
Sbjct: 282 VDAADTRISENIDAVDQVLAEIE-ANDIPTLLVMNKIDLLDDFVPRIDRDEENRPVRVWL 340

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
           S+  GEG+  L+  +   L+ +  +    +P      R  ++  Q + 
Sbjct: 341 SAHNGEGMALLMQALTERLAGEIARHELRLPPQAGRLRSRFYQLQAIE 388


>gi|315302939|ref|ZP_07873669.1| GTP-binding protein HflX [Listeria ivanovii FSL F6-596]
 gi|313628697|gb|EFR97100.1| GTP-binding protein HflX [Listeria ivanovii FSL F6-596]
          Length = 409

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 111/319 (34%), Gaps = 48/319 (15%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKL------- 165
           N ++   +  +++  + +      Q  L   +M      G+L   Y Q+   L       
Sbjct: 81  NSELSATQVRNISKAVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQG 140

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKI 222
             +             E       + +   +  +K  +S      K     RNG   ++ 
Sbjct: 141 ISLSKLGGGIGSRGPGESKLEMDKRHIREKMHDIKLQLSHVEQHRKRIIDRRNGQDVFRF 200

Query: 223 VILGHSNAGKSSLFNALAK----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            ++G++NAGKS++FN L      ++  +   +  TTR +      L G+   ++DT G  
Sbjct: 201 GLIGYTNAGKSTIFNRLTNETTLEEDKLFATLDPTTRKIRF----LGGFQALLTDTVGFI 256

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIG 326
           +          + T  E  N D+++ + + +    +                ++  + + 
Sbjct: 257 QDLPTTLVAAFRSTLEETANVDVLVHVVDASDGDYLQHETTVLALLEELEMNHLPLLTVY 316

Query: 327 TKSDLYST--YTEEYDHLISS--------FTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            K D  +     ++ +HL+ S           + + ELI K     + +  +      + 
Sbjct: 317 NKMDQVAATFIPDQPEHLLISALDSVAPNILKQRMIELIEKEWGYFTQELSEENGKELAQ 376

Query: 377 KRHLYHLSQTVRYLEMASL 395
            +    +++ + YLE    
Sbjct: 377 IKQKAWITK-LEYLEEKQA 394


>gi|302871642|ref|YP_003840278.1| small GTP-binding protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574501|gb|ADL42292.1| small GTP-binding protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 607

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 21/165 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G+ N GKS +FN L  + V  V++ P TT DV             I DT G+    
Sbjct: 19  IALVGNPNVGKSVIFNKLTGRYV-EVSNYPSTTVDVNYGFY----KDYVIVDTPGVYGIS 73

Query: 282 DIVEKEGIKR-----TFLEVENADLI-----LLLKE--INSKKEISFPKNIDFIFIGT-- 327
              ++E + R     T   +   D +     L L +  I+ +KE+    N+         
Sbjct: 74  SFNDEEIVTRDIVLNTQKIINVVDSVHLDRDLFLTQQLIDYQKEVIVVLNMFDEIEKNDI 133

Query: 328 KSDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
           K D+              S+  GEG+++L   I   L  K K  P
Sbjct: 134 KIDIEKLKDILGVEVIATSASRGEGIDKLKEAIDKNLFKKGKSTP 178


>gi|317153712|ref|YP_004121760.1| GTP-binding proten HflX [Desulfovibrio aespoeensis Aspo-2]
 gi|316943963|gb|ADU63014.1| GTP-binding proten HflX [Desulfovibrio aespoeensis Aspo-2]
          Length = 535

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 87/239 (36%), Gaps = 22/239 (9%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           M  +   L  L G+    ++ +   I        + ++      + L  +      +   
Sbjct: 295 MAQLKYTLPRLVGKNR-AMSRLMGGIGGRGPGETKLEIDRRRIDDRLTRLKKELEQVRKR 353

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE- 265
            +Q +          + ++G++NAGKS+L N L +  V +  D    T D  +  +    
Sbjct: 354 RTQTRERRAKAGLPIVSLVGYTNAGKSTLLNTLTQSKV-LAEDKLFATLDPTSRRIRFPQ 412

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPKN--- 319
              V ++DT G         KE  + T  E+E+ADL++L+ +     +++++   ++   
Sbjct: 413 EREVVLTDTVGFIRRLPPDLKEAFRATLEELESADLLVLVCDAAHPEAEQQVEAVRSILA 472

Query: 320 ------IDFIFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNK 365
                 I  I +  K D       E            S+     LE ++  I + +   
Sbjct: 473 DMELDAIPSILVLNKWDRLDEEGREAMGNVFPGGIPASALNRSSLEPVVEAILAAIPWG 531


>gi|242399634|ref|YP_002995059.1| GTP-binding protein [Thermococcus sibiricus MM 739]
 gi|242266028|gb|ACS90710.1| GTP-binding protein [Thermococcus sibiricus MM 739]
          Length = 188

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 70/177 (39%), Gaps = 38/177 (21%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT---IDLDLEGY--------- 267
            K+ I+G  N GKS+L NAL  K V+    IPGTT+ ++      + +            
Sbjct: 2   IKVAIIGAENVGKSTLMNALLGKKVSETQPIPGTTKGIIKRAFGTVKIPKTMKNPFGGAD 61

Query: 268 LVKISDTAGIRE-----TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------- 313
            + + DTAG+ +        ++ +E  K    E+ +AD+I+ + +               
Sbjct: 62  ELVLIDTAGLYDPQYELRGKVLSEEKFKELLNEIASADVIINMIDAQYGLHRGMEKLHHI 121

Query: 314 ISFPKNIDFIFIGTKSDLYSTYT------------EEYDHLISSFTGEGLEELINKI 358
           + F      I +  K DL                 E+   ++S  T EG  EL+ K+
Sbjct: 122 LKFRYEKPIIVVVNKIDLIPKEKVEELREIIKKRLEQEPIMLSLVTYEGFNELLEKL 178


>gi|166032652|ref|ZP_02235481.1| hypothetical protein DORFOR_02367 [Dorea formicigenerans ATCC
           27755]
 gi|166027009|gb|EDR45766.1| hypothetical protein DORFOR_02367 [Dorea formicigenerans ATCC
           27755]
          Length = 681

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 19/157 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             +  +G+ N GK++LFNA    ++  V + PG T +        E    ++ D  GI  
Sbjct: 5   INVGFIGNPNCGKTTLFNAYTGANLK-VANWPGVTVEKKEGFTTYEDQKFRLIDLPGIYS 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                 +E + R  +  +  D+I+ + + +S +                +      D+  
Sbjct: 64  LTSYTMEETVSRECIMSDEVDVIVDVIDASSLERNLYLALQLIELGKPVVLALNMMDIVE 123

Query: 334 TYTEEYDHLI------------SSFTGEGLEELINKI 358
           +   E D               S+    GL  L++ +
Sbjct: 124 SRGMEIDLHRLPEMLGIPAIPVSARKKTGLSILLHAV 160


>gi|161615552|ref|YP_001589517.1| hypothetical protein SPAB_03326 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|200390636|ref|ZP_03217247.1| putative small GTP-binding domain protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|161364916|gb|ABX68684.1| hypothetical protein SPAB_03326 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|199603081|gb|EDZ01627.1| putative small GTP-binding domain protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 291

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 79/186 (42%), Gaps = 12/186 (6%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            L + +   I + ++  +      I I+G S AGKSSL N L + +V+ ++D+   TRDV
Sbjct: 16  ALPDTLRQLILE-RIQNLTHYEPVIGIMGKSGAGKSSLCNELFRGEVSPISDVNACTRDV 74

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----- 312
           L   L    + + I D  G+ E + + ++E        +   DL+L + + + +      
Sbjct: 75  LRFRLRSGRHSLMIVDLPGVGE-NGLRDQEYRALYRRMLPELDLVLWVIKADDRALSVDE 133

Query: 313 ----EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368
                +  P     +F+  ++D       E+D   S+ + +    L  K  +I +    +
Sbjct: 134 QFWHGVMQPYQQQVLFVLNQADKIEP-CHEWDIRTSTPSPQQQTNLKAKQAAITTIFTPR 192

Query: 369 LPFSIP 374
            P  + 
Sbjct: 193 HPVCMV 198


>gi|126733740|ref|ZP_01749487.1| GTP-binding protein Era [Roseobacter sp. CCS2]
 gi|126716606|gb|EBA13470.1| GTP-binding protein Era [Roseobacter sp. CCS2]
          Length = 305

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 74/206 (35%), Gaps = 24/206 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N +    V+IVT    TTR  +      E   +   DT G+ +  
Sbjct: 11  VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMAENAQLIFIDTPGLFKPR 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEI-----SFPKNIDFIFIGTKSD- 330
             +++  I   +    +AD+++L+ E      +  K I                  K D 
Sbjct: 71  RRLDRAMIAAAWGGAADADVVVLMIEAHRGVTDGVKAILETLSERAGKSPVALAINKIDK 130

Query: 331 --------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                   L     + Y      +IS+  G G + L + + + +       P    +   
Sbjct: 131 VKSEVLLALTQQMNDAYPFAETFMISAERGHGCDALRDWLTTQVPEGPFLYPEDQIADLP 190

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDI 404
                ++  R      L+ ++   ++
Sbjct: 191 MRMIAAEMTREKLTLRLH-QELPYEL 215


>gi|300691800|ref|YP_003752795.1| GTP-binding protein hflX, GTPase activity [Ralstonia solanacearum
           PSI07]
 gi|299078860|emb|CBJ51521.1| GTP-binding protein hflX, GTPase activity [Ralstonia solanacearum
           PSI07]
          Length = 417

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 76/214 (35%), Gaps = 29/214 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + +      L  ++     Q       R   + + + ++G++NAGKS+LFNAL K 
Sbjct: 165 ELDRRMLDERAKRLSAELDRLQRQHDTQRRARSRNDAFSVSLVGYTNAGKSTLFNALTKA 224

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
             A   +    T D  +  L L+G   V +SDT G             + T  E  +AD+
Sbjct: 225 -RAYAANQLFATLDTTSRRLYLDGLGNVVLSDTVGFIRDLPTQLVAAFRATLEETVHADV 283

Query: 302 ILLLKEINSKKEISFPKNIDF------------IFIGTKSDLYSTYTEEYD--------- 340
           +L + +  S  +    + +D             I +  K D       +           
Sbjct: 284 LLHVVDAASAVKHEQMEQVDRVLAEIDASGIPQILVMNKIDAAEELRTQGPRIERDEAGA 343

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                +S+  G GLE L   +    +   ++ P 
Sbjct: 344 VRRVFVSALDGTGLELLREALVETANRLRERPPS 377


>gi|238757520|ref|ZP_04618705.1| GTP-binding protein hflX [Yersinia aldovae ATCC 35236]
 gi|238704282|gb|EEP96814.1| GTP-binding protein hflX [Yersinia aldovae ATCC 35236]
          Length = 433

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 114/354 (32%), Gaps = 50/354 (14%)

Query: 70  PSPESFTGEDSAE-----FHVHGGIAVV-NGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           P P+ F GE  AE         G   V+ +  L    +    RL                
Sbjct: 52  PHPKYFVGEGKAEEIADAVKASGASVVLFDHALSAAQERNLERLCE-------------C 98

Query: 124 DLLEAESLADLISSETEMQR----RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            +++   L   I ++         ++ +  +    + L   W   L   +  I       
Sbjct: 99  RVIDRTGLILDIFAQRARTHEGKLQVELAQLRHIATRLVRGWTH-LERQKGGIGLRGPGE 157

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            + +      ++ ++ IL   + ++    QG+      +   + ++G++NAGKSSLFN +
Sbjct: 158 TQLETDRRLLRDRISLILSRLDRVAKQREQGRRSRTRADIPTVSLVGYTNAGKSSLFNKI 217

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
              DV    D    T D     +++       ++DT G             K T  E   
Sbjct: 218 TAADV-YAADQLFATLDPTLRRINVADVGDTVLADTVGFIRHLPHDLVAAFKATLQETRQ 276

Query: 299 ADLILLLKEINSKKEIS------------FPKNIDFIFIGTKSDLYSTYTEEYD------ 340
           A L+L + +    +                   I  + +  K DL   +    D      
Sbjct: 277 ASLLLHIIDAADPRVAENMAAVDSVLAEIEADEIPTLLVMNKIDLLDDFVPRIDRNEDNL 336

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
                +S+ TG G+  L   +   LS +       +P      R  ++  Q + 
Sbjct: 337 PVRVWLSAQTGAGIPLLFQALTERLSGEIAHFELRLPPQAGRLRSRFYQLQAIE 390


>gi|165923918|ref|ZP_02219750.1| ferrous iron transport protein B [Coxiella burnetii RSA 334]
 gi|165916643|gb|EDR35247.1| ferrous iron transport protein B [Coxiella burnetii RSA 334]
          Length = 816

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 67/188 (35%), Gaps = 26/188 (13%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N + I + G+ N GK+ +FNAL       V + PG T D        +GY VK+ D  
Sbjct: 1   MDNDFIIALGGNPNCGKTVVFNALTGS-RQRVGNWPGVTVDKKYGYFQHQGYKVKVVDLP 59

Query: 276 GIRETDDIVEK----EGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFI 325
           G   T    E     E I   +L  + AD+I+ + + ++ +            NI  I  
Sbjct: 60  GTYSTSVTSEAGAIDEKIACGYLLSDEADIIVNVIDGSNLERNLYLTLQLLEMNIPTILA 119

Query: 326 GTKSDLYSTYTEEYDHLISSF------------TGEGLEELIN---KIKSILSNKFKKLP 370
               D+        D    S               +G+E L +   KIK       +  P
Sbjct: 120 VNMMDIVKQRGLVLDLKQLSKRLGCPVVGLVARQNKGIEALKDGILKIKEKADRSAQNAP 179

Query: 371 FSIPSHKR 378
            +     R
Sbjct: 180 RTSAREAR 187


>gi|153208223|ref|ZP_01946633.1| ferrous iron transport protein B [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212217909|ref|YP_002304696.1| ferrous iron transport protein B [Coxiella burnetii CbuK_Q154]
 gi|120576128|gb|EAX32752.1| ferrous iron transport protein B [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212012171|gb|ACJ19551.1| ferrous iron transport protein B [Coxiella burnetii CbuK_Q154]
          Length = 816

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 67/188 (35%), Gaps = 26/188 (13%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           + N + I + G+ N GK+ +FNAL       V + PG T D        +GY VK+ D  
Sbjct: 1   MDNDFIIALGGNPNCGKTVVFNALTGS-RQRVGNWPGVTVDKKYGYFQHQGYKVKVVDLP 59

Query: 276 GIRETDDIVEK----EGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFI 325
           G   T    E     E I   +L  + AD+I+ + + ++ +            NI  I  
Sbjct: 60  GTYSTSVTSEAGAIDEKIACGYLLSDEADIIVNVIDGSNLERNLYLTLQLLEMNIPTILA 119

Query: 326 GTKSDLYSTYTEEYDHLISSF------------TGEGLEELIN---KIKSILSNKFKKLP 370
               D+        D    S               +G+E L +   KIK       +  P
Sbjct: 120 VNMMDIVKQRGLVLDLKQLSKRLGCPVVGLVARQNKGIEALKDGILKIKEKADRSAQNAP 179

Query: 371 FSIPSHKR 378
            +     R
Sbjct: 180 RTSAREAR 187


>gi|86159712|ref|YP_466497.1| ferrous iron transport protein B [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85776223|gb|ABC83060.1| ferrous iron transport protein B [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 741

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I I G+ N+GKS+L N LA      V + PG T +      +  G  +++ D  G   
Sbjct: 21  VTIAIAGNPNSGKSTLVNGLAGS-RLQVGNWPGVTVERKEASFEHGGRRIRLVDLPGTYS 79

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
                ++E + R +L  E  D+++ + +  + +
Sbjct: 80  LSPWSQEERVARDYLVEERPDVVVNVVDATNLE 112


>gi|160915671|ref|ZP_02077879.1| hypothetical protein EUBDOL_01678 [Eubacterium dolichum DSM 3991]
 gi|158432147|gb|EDP10436.1| hypothetical protein EUBDOL_01678 [Eubacterium dolichum DSM 3991]
          Length = 409

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/300 (18%), Positives = 103/300 (34%), Gaps = 30/300 (10%)

Query: 136 SSETEMQRRLSME-GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++++  R       +  + S L G     L    +  +      ++ ++        + 
Sbjct: 105 RAKSKAARLQIENAQLKRQRSRLIGS-KKHLGRQSASGQNKGLGEKQLELDRRRIASRIV 163

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA------KKDVAIVT 248
                   +       +   +      + ++G++NAGKS++ NAL       K+      
Sbjct: 164 STTRELKQLEKTRMTQRNARLQSRLPLVSLIGYTNAGKSTIMNALLQYSNSSKEKYVYEK 223

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE- 307
           D+   T D     +DL      +SDT G          E    T  E   ADL++ + + 
Sbjct: 224 DMLFATLDTSLRRIDLGHQSFLLSDTVGFVRDLPHELIEAFHSTLEEACYADLLIEVIDT 283

Query: 308 -----------INSKKEISFPKNIDFIFIGTKS---DLYSTYTEEYDHLISSFTGEGLEE 353
                       +   +     N+  + +  K    D+           IS+   E ++E
Sbjct: 284 SYADYEQQMKVTSDTLQALHIGNLPILHVFNKCDQTDIPYPSMHGEHLFISAKNEECIKE 343

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413
           LIN+I+  L      +   IP  K  LY      R L  A ++++D   D    +L +A 
Sbjct: 344 LINQIRLRLFPLTTMVKLCIPYEKSSLYG-----RLLTQAQISQRDDFED--GMHLEVAL 396


>gi|254465678|ref|ZP_05079089.1| GTP-binding protein Era [Rhodobacterales bacterium Y4I]
 gi|206686586|gb|EDZ47068.1| GTP-binding protein Era [Rhodobacterales bacterium Y4I]
          Length = 301

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 24/171 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDAQLVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK------------------EINSKKEISFPK 318
           + +    +++  +   +    +AD+++L+                   EI   + ++   
Sbjct: 63  LFKPRRRLDRAMVAAAWGGAADADVVVLMVEAHRGITEGVETILEGLAEIGEGRTVALAI 122

Query: 319 NIDFIFIGTK-----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
           N        K      DL   Y      +IS+  G G+++L   +   L  
Sbjct: 123 NKIDKVPAEKLLGLAQDLNRRYAFAETFMISAERGHGVDDLRKWLAGKLPE 173


>gi|116073855|ref|ZP_01471117.1| putative GTP-binding protein, transport associated [Synechococcus
           sp. RS9916]
 gi|116069160|gb|EAU74912.1| putative GTP-binding protein, transport associated [Synechococcus
           sp. RS9916]
          Length = 575

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 88/259 (33%), Gaps = 34/259 (13%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI 207
              +G +     Q   +L  +     +          +     ++  D   +   I +  
Sbjct: 303 ASAAGRIQVELAQLRYRLPRLLGRGRSLSRQGGGIGTRGPGETQLEKDRRAISRRIEALR 362

Query: 208 SQGKLGE----IIRNG----YKIVILGHSNAGKSSLFNALA---KKDVAIVTDIPGTTRD 256
              K  E     +R+      ++ ++G++NAGKSSL NAL    ++   +  +    T D
Sbjct: 363 RATKQLEEHRARLRDRRESLPRLALVGYTNAGKSSLLNALCVKGERKKVLAENKLFATLD 422

Query: 257 VLTIDLDLE-----GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
             T  L L         + I+DT G          E  + T  E  +AD++LL+ ++   
Sbjct: 423 PTTRRLTLPQPAAAARELLITDTVGFIRDLPDALVEAFRATLEEALDADVLLLVVDLADP 482

Query: 312 KEISFPK-----------NIDFIFIGTKSD------LYSTYTEEYDHLISSFT-GEGLEE 353
              +              N   + +  + D      + +   +E + +  S T G GL+ 
Sbjct: 483 DWQAQLTAVHRLLTDLGCNKPRLVVANQIDRCQVEAIDAITDQESEVIFISATDGTGLQG 542

Query: 354 LINKIKSILSNKFKKLPFS 372
           L  +++             
Sbjct: 543 LKQRLERQFWEVETDTSTV 561


>gi|310828626|ref|YP_003960983.1| ferrous iron transport protein B [Eubacterium limosum KIST612]
 gi|308740360|gb|ADO38020.1| ferrous iron transport protein B [Eubacterium limosum KIST612]
          Length = 676

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 19/168 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y++ ++G+ N+GK++LFN+L   ++  V + PG T +    DL      + + D  GI  
Sbjct: 3   YRVALVGNPNSGKTTLFNSLTGSNL-YVGNWPGVTIEKKEGDLRDTASKITLVDLPGIYS 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                  E + R FL  E  DLI+ + + ++ +             I  I +    D+  
Sbjct: 62  LAPYSMDEIVSRDFLLSEPPDLIINILDASNIERNLYLTTQLMELKIPIIGVLNMMDIVE 121

Query: 334 TYTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKL 369
               + D              IS+  G G+E LI  ++  L +  K  
Sbjct: 122 KKGLKLDLQSLKKGFGFPFMEISAQKGIGIEALIKAVEEKLEDDRKSG 169


>gi|302342696|ref|YP_003807225.1| ferrous iron transport protein B [Desulfarculus baarsii DSM 2075]
 gi|301639309|gb|ADK84631.1| ferrous iron transport protein B [Desulfarculus baarsii DSM 2075]
          Length = 713

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 71/190 (37%), Gaps = 19/190 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           + G+ + + G+ N+GK+S+FNAL       V + PG T +     +      +++ D  G
Sbjct: 4   KRGFTVALAGNPNSGKTSMFNALTGA-RQHVGNYPGVTVEKKWGQVRHGQQTIEVVDLPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSD 330
                    +E + R F+  +  D+I+ + +  + +   +            +      D
Sbjct: 63  TYSLTAYSLEEVVARNFIIQQRPDVIIDVVDAANLERNLYLAVQFMELGAPLVIALNMID 122

Query: 331 LYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +      + D                +  G+G++EL++    + + + +  P  +     
Sbjct: 123 VAEARGLQIDVAKLSQLLGVPVVPTVARGGKGMKELLDAAAQVAAERKEWKPLELSYGHD 182

Query: 379 HLYHLSQTVR 388
               L++ V 
Sbjct: 183 VDQALAKLVE 192


>gi|220934267|ref|YP_002513166.1| GTP-binding protein Era [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995577|gb|ACL72179.1| GTP-binding protein Era [Thioalkalivibrio sp. HL-EbGR7]
          Length = 281

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 68/191 (35%), Gaps = 23/191 (12%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKS+L NAL  + +A  T  P TTR  +   +      + + DT GI    + +    + 
Sbjct: 2   GKSTLLNALVGEKIAATTRKPQTTRHRILGIVTRGADQLILVDTPGIDTRSEKLLGRVLN 61

Query: 291 RTFLEV-ENADLILLLKEIN-----SKKEISFPKN---IDFIFIGTKSD----------- 330
           +    V  + D +L + E +       + +   K       +    K D           
Sbjct: 62  QAAQAVFADTDAVLFVVEADRWESGDAQILEMLKQAGVKKLVLAINKVDRLERKEALLPF 121

Query: 331 ---LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
              L   +       IS   G  LE L++ ++  L       P    + +   + +++ +
Sbjct: 122 IERLQGLHAFSDIVPISGLRGVNLEPLVDVLQGFLPEGVHLFPEDELTDRSQRFRVTEVI 181

Query: 388 RYLEMASLNEK 398
           R   +  L ++
Sbjct: 182 REELLERLGQE 192


>gi|237756890|ref|ZP_04585366.1| GTP-binding protein EngA [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237690953|gb|EEP60085.1| GTP-binding protein EngA [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 222

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 28/152 (18%)

Query: 262 LDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEINSK------- 311
            + +G      DTAG+R+   +    E   + RT   +E AD+++L+ + N         
Sbjct: 2   YEKDGQKFLFLDTAGMRKKSKVEYGLEFFSVGRTIEAIEKADVVVLVIDANQGATEQDTK 61

Query: 312 -KEISFPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGEGLEEL 354
              +   +    + +  K D     T E                     S+ T EGL+EL
Sbjct: 62  IAGLIQRRYKPTVIVINKIDTIDKKTLEKVENQVRERLYFISYAPIVFTSAKTKEGLDEL 121

Query: 355 INKIKSILSNKFKKLPFSIPSHK-RHLYHLSQ 385
           + KI  + +  +K++     +   + + +L Q
Sbjct: 122 LEKIVYVYNQAWKRVGTGQLNRAIKQIQNLRQ 153


>gi|256819600|ref|YP_003140879.1| GTP-binding protein HSR1-related [Capnocytophaga ochracea DSM 7271]
 gi|256581183|gb|ACU92318.1| GTP-binding protein HSR1-related [Capnocytophaga ochracea DSM 7271]
          Length = 720

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 25/194 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y I + G+ N GKS++FNAL         + PG T               +I D  G   
Sbjct: 28  YTIALAGNPNTGKSTVFNALTGL-RQHTGNWPGKTVTRAEGSFSFHKERYRIIDLPGTYS 86

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
                E E + R F+     D+ +++ +  S+ E +    +  + I  K+ L     +E 
Sbjct: 87  LLSTSEDEEVARDFILFGKPDVTVIVVDA-SRLERNLSLALQILEITDKAVLCLNLMDEA 145

Query: 340 DHLI-------------------SSFTGEGLEELINKIKSILSNKFKKLPFSIP----SH 376
                                  S+ T EG+ +L+  I+ ++S KF+    +       +
Sbjct: 146 RRHHINIDTRTLSRDLGIPVVATSARTKEGIADLLFAIEEVVSGKFQTKKQTFIDLPKQN 205

Query: 377 KRHLYHLSQTVRYL 390
              +  L + +  L
Sbjct: 206 AEAIAELQKALSEL 219


>gi|163753670|ref|ZP_02160793.1| GTP-binding protein HflX [Kordia algicida OT-1]
 gi|161325884|gb|EDP97210.1| GTP-binding protein HflX [Kordia algicida OT-1]
          Length = 413

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 23/221 (10%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQ-----GKLGEIIRNGYKIVILGHSNAGKSSLF 236
           E       + V + I  L+  + +   Q     G  G +IR    + ++G++N GKS+L 
Sbjct: 171 ETEIETDRRIVRDKIALLRKKMVTIDKQMAVQRGNRGALIR----VALVGYTNVGKSTLM 226

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           N ++K +V    +    T D     + +      +SDT G          +  K T  EV
Sbjct: 227 NVISKSEV-FAENKLFATLDTTVRKVVIGNLPFLLSDTVGFIRKLPTQLVDSFKSTLDEV 285

Query: 297 ENADLILLLKEINSK----------KEISFPK--NIDFIFIGTKSDLYSTYTEEYDHLIS 344
             ADL+L + +I+            + +S  K  +   + +  K D Y+  T + D L++
Sbjct: 286 READLLLHVVDISHPNFEDHIASVNQILSEIKSGDKPTVMVFNKIDAYTHETIDSDDLVT 345

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385
             T +    L +  K+ +++  + + F    +K +L    +
Sbjct: 346 EKT-KAHYTLDDWKKTWMNSSAEDVLFISALNKENLDEFKR 385


>gi|332159398|ref|YP_004424677.1| GTP-binding protein hflX [Pyrococcus sp. NA2]
 gi|331034861|gb|AEC52673.1| GTP-binding protein hflX [Pyrococcus sp. NA2]
          Length = 425

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 15/129 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + + G++NAGKS+L NAL  ++V   + +  TT D  T    ++G ++ ++DT G  +
Sbjct: 188 VLVALAGYTNAGKSTLLNALTGEEVEAKSQMF-TTLDTTTRRFKVKGKMLLVTDTVGFID 246

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK-KEISF-------------PKNIDFIFI 325
                  E    T  E+  +D+I+L+ + +   KEI                 +   I  
Sbjct: 247 GLPPFIVEAFHSTLEEIVKSDIIILVLDGSESWKEIRRKFFASLDVLRELKALDRPMIIA 306

Query: 326 GTKSDLYST 334
             K DL S 
Sbjct: 307 LNKVDLISE 315


>gi|304439340|ref|ZP_07399252.1| ferrous iron transport protein B [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372122|gb|EFM25716.1| ferrous iron transport protein B [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 673

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I +LG  N+GKS+LFN L   +   V + PG T +    +   +     I D  G   
Sbjct: 4   ITIALLGQPNSGKSTLFNGLTGSNQ-HVGNWPGKTVEKKEGEFSYKDTNYTIVDLPGTYG 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYS 333
                E+E I R ++E  NADLI ++ + +      F        NI  + I    D+ +
Sbjct: 63  LSANSEEEVITREYIETGNADLIAIMADASQLNRSLFMLSDYIGINIPVVLIMNMMDVAT 122

Query: 334 TYTEEYDH 341
           +  +  + 
Sbjct: 123 SQGKNINI 130


>gi|169824593|ref|YP_001692204.1| GTPase [Finegoldia magna ATCC 29328]
 gi|167831398|dbj|BAG08314.1| GTPases [Finegoldia magna ATCC 29328]
          Length = 415

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 110/293 (37%), Gaps = 29/293 (9%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T+    ++ +      L  L G + D L+     I        + +V   + ++ ++
Sbjct: 109 RAKTKQSVLQVELAEYKYRLPRLIG-FRDHLSRTGGGIGTRGPGETKLEVDRRTIQKKID 167

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVT 248
           +I      I       +   +  +   + ++G++NAGKS+L N L         +     
Sbjct: 168 NIKRELKSIDKSQENMRKQRLKSDIKMVSMVGYTNAGKSTLSNKLVNFYKDKYTEEFETE 227

Query: 249 DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           D+   T D       L       + DT G  +       E  K T L+++++DLIL + +
Sbjct: 228 DLLFKTLDTTLRKCTLPNKKQCLVIDTVGFIKDIPTDLIEAFKSTLLDLKHSDLILFVLD 287

Query: 308 INSK-------------KEISFPKNIDFIFIGTKSD----LYSTYTEEYDHLISSFTGEG 350
            +S              KE+          +  KSD    +   Y  +    IS+F  + 
Sbjct: 288 SSSSDLDNQITTTMDILKELKVLDKPMVT-VFNKSDKNPNVIFPYNLDNKIKISAFNDKD 346

Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRH-LYHLSQTVRYLEMASLNEKDCGL 402
           +E+L+ KI+  L   +K +      + +  L  + Q  +  E  S N  D  L
Sbjct: 347 IEKLLYKIQEELYGNYKCVNMKFDYNHQDVLNAVLQNFKC-ENVSYNNDDVSL 398


>gi|114330965|ref|YP_747187.1| small GTP-binding protein [Nitrosomonas eutropha C91]
 gi|114307979|gb|ABI59222.1| GTP-binding protein HflX [Nitrosomonas eutropha C91]
          Length = 377

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 77/211 (36%), Gaps = 29/211 (13%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKKDV 244
             + +   + FLK  ++    Q  +    R       + I+G++NAGKS+LFN L + D 
Sbjct: 164 DRRLLAKRVKFLKEKLAKLKQQRDVQRRARKRSEIMSVSIVGYTNAGKSTLFNRLVRSD- 222

Query: 245 AIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           A   D    T D  T  L L    L+ ISDT G             + T  E   ADL+L
Sbjct: 223 AYAADKLFATLDTTTRRLFLPERGLIVISDTVGFIRDLPHTLVAAFRATLEETIQADLLL 282

Query: 304 LLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEE----------YD 340
            + +++S              +EI     I  I I  K DL    + E            
Sbjct: 283 HVVDVSSSNRDVQISEVNKLLQEIG-ADTIPQILILNKIDLIEQGSSENYMRDEYGRIAR 341

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +S+ TG G   L   +         KL  
Sbjct: 342 IHLSARTGAGFGYLYEALVEAFDQNLNKLSS 372


>gi|253681775|ref|ZP_04862572.1| putative ferrous iron transport protein B [Clostridium botulinum D
           str. 1873]
 gi|253561487|gb|EES90939.1| putative ferrous iron transport protein B [Clostridium botulinum D
           str. 1873]
          Length = 591

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 23/161 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GK++LFNAL   +   V +  G T +     L+     +KI D  GI  
Sbjct: 2   LTVALVGNPNVGKTTLFNALTGSNQ-YVGNWAGVTVERKEGFLN---KCIKIVDLPGIYA 57

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYS 333
            D    +E + + FL   NAD+I+ + + ++     +        N   I +    D+  
Sbjct: 58  MDTYSNEEKVSKDFLLAGNADVIINIVDASNLDRNLYLTTQLRQFNKPIIIVLNMIDVAE 117

Query: 334 TYTEEYD-------------HLISSFTGEGLEELINKIKSI 361
           +     D               +S+  G+GL  L + + + 
Sbjct: 118 SKGINIDVEKLKNELGANDIFPMSASKGQGLNNLKDSLLTA 158


>gi|222529552|ref|YP_002573434.1| small GTP-binding protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222456399|gb|ACM60661.1| small GTP-binding protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 607

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 21/165 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I ++G+ N GKS +FN L  + V  V++ PGTT DV             I DT G+    
Sbjct: 19  IALVGNPNVGKSVIFNKLTGRYV-EVSNYPGTTVDVNYGFY----KDYVIVDTPGVYGIS 73

Query: 282 DIVEKEGIKR-----TFLEVENADLI-----LLLKE--INSKKEISFPKNIDFIFIGT-- 327
              ++E + R     T   +   D +     L L +  I+ +KE+    N+         
Sbjct: 74  SFNDEEIVTRDIVLNTQKIINVVDSVHLDRDLFLTQQLIDYQKEVIVVLNMVDEVEKNNI 133

Query: 328 --KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
               D           + S+  G G+++L   I   L  K K  P
Sbjct: 134 TIAIDKLKESLGVEVIVTSASKGIGIDKLREAINKNLFKKGKITP 178


>gi|119511717|ref|ZP_01630821.1| Small GTP-binding protein domain protein [Nodularia spumigena
           CCY9414]
 gi|119463626|gb|EAW44559.1| Small GTP-binding protein domain protein [Nodularia spumigena
           CCY9414]
          Length = 449

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 12/159 (7%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           LK ++ +      L ++  N  +I   G  + GKS++ NAL  + +     + G T+   
Sbjct: 42  LKPELDAL--NSTLNKLDSNVIRIAAFGLVSRGKSAVLNALLGEKILQTGPLNGVTQWPR 99

Query: 259 TIDLDLEGYLVK-ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---- 313
           ++     G ++  + DT G+   D+I      K        ADLIL +   +  +     
Sbjct: 100 SVRWQPGGKVLVELIDTPGL---DEIGGDTRAKMAREVTRQADLILFVVSGDITRTEYRG 156

Query: 314 --ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
                      I +  K DLY        +      G G
Sbjct: 157 LLELRKAQKPLILVFNKIDLYPETDRSAIYDNLQQLGAG 195


>gi|218883384|ref|YP_002427766.1| Ferrous iron transport protein B [Desulfurococcus kamchatkensis
           1221n]
 gi|218765000|gb|ACL10399.1| Ferrous iron transport protein B [Desulfurococcus kamchatkensis
           1221n]
          Length = 698

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 79/203 (38%), Gaps = 24/203 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+V +G  N GKSSLFN + K  V  V + PG T  V   ++    Y + + D  GI  
Sbjct: 9   VKVVFIGQPNVGKSSLFNLVTKSHV-EVGNWPGKTVVVHKGEITYGSYQLILYDLPGIYG 67

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
              + ++E + R  +  E  D+I+++ +    +                + + +K+DL  
Sbjct: 68  FSTLTQEEIVAREAILAEKPDVIIVVADSTIPERTMSILIQVLELTGRVVLVFSKTDLTH 127

Query: 334 TYTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           +     D+             +S  +   +E+L+  I  +   +  +        +    
Sbjct: 128 SKGIHIDYRGIEKELGIPVVPVSIASDMEMEDLLKAIIDVAEGRKGRRE----PLRIDYN 183

Query: 382 HLSQTVRYLEMASLNEKDCGLDI 404
            L++ +  +E   L      +D+
Sbjct: 184 GLNEYIDSIEDVLLKA-GLPIDL 205


>gi|212550977|ref|YP_002309294.1| GTP-binding protein HflX [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549215|dbj|BAG83883.1| GTP-binding protein HflX [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 408

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 25/198 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQ-----GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
             + +LN I+ LK ++     Q        G ++R    + ++G++N GKS+L + L+K 
Sbjct: 162 DRRIILNKIIHLKKELKKIDKQKVVQRSNRGRMVR----VALVGYTNVGKSTLMSLLSKS 217

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D+    +    T D     + +   +  ++DT G          E  K T  EV  ADL+
Sbjct: 218 DI-FTENKLFATIDTTVRKVTINNLVFLLTDTVGFIRKLPTELIESFKSTLDEVREADLL 276

Query: 303 LLLKEINSKK-------------EISFPKNIDFIFIGTKSD-LYSTYTEEYDHLISSFTG 348
           + + +I+                EI+  K   +I +  K D L     ++ D +      
Sbjct: 277 IHIVDISHPSFEEQVKVVIQTLNEINKEKK-PYIVVFNKIDALLHITGDKNDLISRDQAN 335

Query: 349 EGLEELINKIKSILSNKF 366
             L+EL       L    
Sbjct: 336 VPLDELKKTWGGKLHENC 353


>gi|313619175|gb|EFR90953.1| GTP-binding protein HflX [Listeria innocua FSL S4-378]
          Length = 407

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 113/303 (37%), Gaps = 41/303 (13%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +++ ++ +      Q  L   +M      G+L   Y Q+           
Sbjct: 79  NSELSATQVRNISKIVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQG 138

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I +      + ++     +E ++DI      +  H  +       ++ ++ 
Sbjct: 139 ASLSKLGGGIGSRGPGESKLEMDKRHIREKMHDIKAQLTHVERHRKRIIDRRNTQSVFRF 198

Query: 223 VILGHSNAGKSSLFNALAK----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            ++G++NAGKS++FN L      ++  +   +  TTR +        G+   ++DT G  
Sbjct: 199 GLIGYTNAGKSTIFNRLTNETTLEEDKLFATLDPTTRKIRFE----GGFQALLTDTVGFI 254

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIG 326
           +          + T  E  N D+++ + + +    +                ++  + + 
Sbjct: 255 QDLPTTLIAAFRSTLEETANVDVLIHVVDASDPDYLQHETTVINLLEELEMSHLPTLIVY 314

Query: 327 TKSDLYST--YTEEYDH-LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYH 382
            K D   +    +  +H LIS+   +  +E+  ++  ++   +      +   K + L  
Sbjct: 315 NKMDKAPSTFVPDRPEHLLISALDQDAPKEIKQRMIELIEKNWTFFTVDLSEEKGKELAQ 374

Query: 383 LSQ 385
           L Q
Sbjct: 375 LKQ 377


>gi|308063687|gb|ADO05574.1| GTP-binding protein Era [Helicobacter pylori Sat464]
          Length = 301

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 28/217 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSD-- 330
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127

Query: 331 LYSTYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           ++    ++                 S+   + L  L+  I   LS         + S ++
Sbjct: 128 VHKQVLQKLQEYQQYASQFLALVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAENLR 410
                 + +R     +L      E D  +D   E  R
Sbjct: 188 MRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEER 224


>gi|298372861|ref|ZP_06982851.1| ferrous iron transport protein B [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275765|gb|EFI17316.1| ferrous iron transport protein B [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 877

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 73/214 (34%), Gaps = 29/214 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N+GKS+LFNA     V  V +  G T DV       +GY     D  G
Sbjct: 106 RREINVALVGNPNSGKSTLFNAFTGMHVK-VGNYSGVTVDVKKGSCSYKGYRFNFVDLPG 164

Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL----------------LLKEINSKKEISFPKNI 320
                    +E + R  +  E  D++L                 L ++N +  I+     
Sbjct: 165 TYSISAFSPEERLVRRHIVDEKPDIVLNVLDSGNLERNMYLTTQLIDMNLRSVIALNFYD 224

Query: 321 DFIFIGTKSDLYS--TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS------ 372
           +F   G K D+ +             +   +G++EL++ +  I  +     P        
Sbjct: 225 EFEHRGDKLDIDALGKLIGIPIVPTVAARRQGIDELLDTMIKIYESSDIIDPDGRLIDSV 284

Query: 373 ----IPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
               +     HL  L         AS  E    L
Sbjct: 285 KDDALIERYHHLIELEHRHGKKHSASDIEGSRPL 318


>gi|293393212|ref|ZP_06637527.1| GTP-binding protein HflX [Serratia odorifera DSM 4582]
 gi|291424358|gb|EFE97572.1| GTP-binding protein HflX [Serratia odorifera DSM 4582]
          Length = 426

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 97/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ ++
Sbjct: 114 RARTHEGKLQVELAQLRHIATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDRIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+      +   + ++G++NAGKS+LFN +   DV    D    T
Sbjct: 173 LILRRLERVEKQREQGRRARTRADVPTVSLVGYTNAGKSTLFNRITSADV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGDTVLADTVGFIRHLPHDLVAAFKATLQETRQASLLLHVIDAADTRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+         I  + +  K D+   +    D           +S+ +GEG+ 
Sbjct: 292 DENIEAVNTVLAEIDSDEIPTLLVMNKIDMLDDFVPRIDRNEENLPIRVWLSAASGEGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            L   +   LS +  +    +P      R  ++  Q + 
Sbjct: 352 LLFQALTERLSGEIAQHELRLPPEAGRLRSRFYQLQAIE 390


>gi|284048237|ref|YP_003398576.1| ferrous iron transport protein B [Acidaminococcus fermentans DSM
           20731]
 gi|283952458|gb|ADB47261.1| ferrous iron transport protein B [Acidaminococcus fermentans DSM
           20731]
          Length = 693

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 28/192 (14%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
             H+   K          I  +G+ N GK++LFNA    ++  V + PG T + +   + 
Sbjct: 8   EKHLHDAKN-------LTIGFIGNPNCGKTTLFNAFTGANLK-VANWPGVTVEKVEGAIR 59

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFP 317
                + + D  G         +E + R F+  +  D+I+ + + ++ +           
Sbjct: 60  RHNMNIHLVDLPGTYSLTSYTMEEIVSRDFILSDEVDVIINVVDASALERSLYLTLQLLE 119

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLI------------SSFTGEGLEELINKIKSILSNK 365
                +      D+      E D               S+    GL+ L++   +I    
Sbjct: 120 LGKPVVMALNMMDIVEKRGMEIDLHRLPEMLGIPVIPVSARKRRGLDVLLHA--AIHHRD 177

Query: 366 FKKLPFSIPSHK 377
            K     I  HK
Sbjct: 178 AKHTDPLIHDHK 189


>gi|154491105|ref|ZP_02031046.1| hypothetical protein PARMER_01027 [Parabacteroides merdae ATCC
           43184]
 gi|154088525|gb|EDN87569.1| hypothetical protein PARMER_01027 [Parabacteroides merdae ATCC
           43184]
          Length = 826

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 19/164 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GK+SLFN  +      V +  G T D         GY  KI D  G   
Sbjct: 112 INVALVGNPNCGKTSLFNFASGAHE-HVGNYSGVTVDAKAGTFHQNGYTFKIVDLPGTYS 170

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----NIDFIFI--GTKSDLYS 333
                 +E   R  L  E  D+++ + + ++ +   +      ++D   +      D   
Sbjct: 171 LSAYTPEELYVRKHLNEEQPDIVINVVDASNLERNLYLTCQLIDMDVRMVIALNMYDELE 230

Query: 334 TYTEEYDHL------------ISSFTGEGLEELINKIKSILSNK 365
            +  ++DH               S TG G+EEL N++  +   +
Sbjct: 231 RHGNKFDHNSLSRMIGTPIVPTISKTGFGIEELFNRVIKVYEEE 274


>gi|303257423|ref|ZP_07343436.1| ferrous iron transport protein B [Burkholderiales bacterium 1_1_47]
 gi|331000032|ref|ZP_08323728.1| ferrous iron transport protein B [Parasutterella excrementihominis
           YIT 11859]
 gi|302859780|gb|EFL82858.1| ferrous iron transport protein B [Burkholderiales bacterium 1_1_47]
 gi|329573180|gb|EGG54797.1| ferrous iron transport protein B [Parasutterella excrementihominis
           YIT 11859]
          Length = 779

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 82/211 (38%), Gaps = 31/211 (14%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---R 278
           I ++G+ N GK++LFN L       V + PG T + +  +   +   + I D  GI   +
Sbjct: 10  IAVVGNPNCGKTTLFNGLTGSHQT-VGNWPGVTVERIVGEFTYKDREITIVDLPGIYSLQ 68

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLY 332
            +    E E + R ++  + A+LI+ + + ++ +             +  I +    D+ 
Sbjct: 69  PSSASSEDERVARDYILQDEAELIVNIVDASNLERNLYLTTQLLEMQVPMIVVLNMLDMA 128

Query: 333 STYTEEYDHL------------ISSFTGEGLEELINKIKSILSN-KFKKLPFSI---PSH 376
           + +  E D              I +   +GL+EL   I + L + +  K P         
Sbjct: 129 AAHQIEIDPHKLSEALGCPVIGIVASKEQGLKELCAAIDAQLDDLRIPKNPIVFADDVEE 188

Query: 377 KRHLYHLSQTVRYLEMA-----SLNEKDCGL 402
            R       + + +E A      L E D G+
Sbjct: 189 ARAKIAKLLSAQKVERAEWTAEQLLEGDAGM 219


>gi|229545318|ref|ZP_04434043.1| HflX subfamily GTP-binding protein [Enterococcus faecalis TX1322]
 gi|229309525|gb|EEN75512.1| HflX subfamily GTP-binding protein [Enterococcus faecalis TX1322]
          Length = 413

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 74/198 (37%), Gaps = 17/198 (8%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351
            + + ++   +   +            NI  + +  K D   +         +      +
Sbjct: 280 HVVDASAPDRLQHERTVQTLIKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 352 EELINKIKSILSNKFKKL 369
            E   ++   +  +  +L
Sbjct: 340 SEDKERLVQAIRAQMMEL 357


>gi|229086869|ref|ZP_04219029.1| GTP-binding protein era [Bacillus cereus Rock3-44]
 gi|228696444|gb|EEL49269.1| GTP-binding protein era [Bacillus cereus Rock3-44]
          Length = 266

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +D P TTR+ +          V   DT GI +    +    +K     ++  D++L +  
Sbjct: 2   SDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVN 61

Query: 308 I----NSKKEISFPK----NIDFIFIGTKSD---------LYSTYTEEYDH----LISSF 346
                   +E    K          +  K D         L   Y + ++      IS+ 
Sbjct: 62  AAEGFGRGEEFIIEKLKETKQPVFLVINKIDQVHPEQLLELIDQYRKLHEFAEIVPISAL 121

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            G  +E LI  IK  L    +  P +  +     + +++ +R
Sbjct: 122 DGNNVEALIGAIKKYLPEGPQYYPENQVTDHPERFIIAELIR 163


>gi|299136416|ref|ZP_07029599.1| GTP-binding proten HflX [Acidobacterium sp. MP5ACTX8]
 gi|298600931|gb|EFI57086.1| GTP-binding proten HflX [Acidobacterium sp. MP5ACTX8]
          Length = 485

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 18/157 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           + ++G++NAGKS+LFN+L   +V + ++    T D     L L     V +SDT G    
Sbjct: 264 VALVGYTNAGKSTLFNSLTGAEV-LASERMFATLDPKLRQLTLPSRRKVLLSDTVGFLRN 322

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFIGT 327
                    + T  EVE A+L+L +++  S               E++  +      +  
Sbjct: 323 LPHALVTSFRATLEEVERAELLLHVRDAASPTLDEQRSQVEAVLSELNVGEKQTLQ-VLN 381

Query: 328 KSDLYSTYTEEYD--HLISSFTGEGLEELINKIKSIL 362
           K+DL    T        +S  TG GL++L++ I + L
Sbjct: 382 KTDLLPPETPFAPGTIPVSGLTGAGLDDLLHAIDAAL 418


>gi|170291165|ref|YP_001737981.1| ferrous iron transport protein B [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175245|gb|ACB08298.1| ferrous iron transport protein B [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 681

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 79/235 (33%), Gaps = 36/235 (15%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + + G  N GKS+LFN +   +V  V +  G T       +   G  ++I D  G   
Sbjct: 4   ILVALAGSPNVGKSTLFNRITGGNV-HVANWAGVTLQRYEGSITYSGRRLRIVDLPGTYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                  E +   F+  E  D+++++ +    ++       +       +      D   
Sbjct: 63  LSARDLGERVALDFIVNEKPDVLVVVADATELEKSLYLAVEAMELYGKVVIALNMIDAAE 122

Query: 334 TYTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLP---FSIPSHKR 378
                 +              IS+  G G+ +L+  I  +   +  +           +R
Sbjct: 123 KRGIHINFDGLERSLGVPVVPISALKGIGIGKLMRAILEVAEGRAGREEPLRVDYNGLER 182

Query: 379 HLYHLSQ-----------TVRYLEMASLNEKDCGLDIIAENLR--LASVSLGKIT 420
           ++  LS+            ++ LE  SL  ++   + I E  R  LA   L  I 
Sbjct: 183 YIAKLSELDYGNYPARWAALKVLE-GSLPPENQEAERICEEARRDLAIDPLSLII 236


>gi|315171589|gb|EFU15606.1| GTP-binding protein HflX [Enterococcus faecalis TX1342]
          Length = 413

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNILTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLIKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 SEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|317051926|ref|YP_004113042.1| ferrous iron transport protein B [Desulfurispirillum indicum S5]
 gi|316947010|gb|ADU66486.1| ferrous iron transport protein B [Desulfurispirillum indicum S5]
          Length = 718

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 65/170 (38%), Gaps = 19/170 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
             + G+ NAGKS+LFN +       V + PG T D L   +D +   ++I D  G     
Sbjct: 7   FALAGNPNAGKSTLFNTITGA-RQHVANYPGVTVDTLEGVIDFQKNTLRIVDLPGTYSLS 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS------FPKNIDFIFIGTKSDLYSTY 335
              ++E + R FL  +  D +L + +  S +             +  +      D     
Sbjct: 66  AYSQEELVARRFLVRQKPDAVLNVLDAGSLERHLYLTVQFLELGVPVVLALNMMDEVRKR 125

Query: 336 TEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
               D                + TGEG ++L+ +  ++ +  ++ L FS 
Sbjct: 126 GISIDIERLSSLLGMPVVATVARTGEGKDQLLQEALALQNRAWEPLVFSY 175


>gi|330817161|ref|YP_004360866.1| Small GTP-binding protein [Burkholderia gladioli BSR3]
 gi|327369554|gb|AEA60910.1| Small GTP-binding protein [Burkholderia gladioli BSR3]
          Length = 400

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 86/256 (33%), Gaps = 28/256 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W   L   +  I        + +       E +  +    + +   
Sbjct: 124 LAQLQYLSTRLIRAWTH-LERQKGGIGLRGPGETQLETDRRLIGERIKMLKSRLDKLRRQ 182

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +  +          + ++G++NAGKS+LFNAL K   A   D    T D  +  + +  
Sbjct: 183 HNTQRRQRERNRTMSMSLVGYTNAGKSTLFNALTKAQ-AYAADQLFATLDTTSRRVYIGD 241

Query: 267 Y--LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-- 322
               + +SDT G             + T  E  +ADL+L + + +S   +   + ++   
Sbjct: 242 EVGQIVVSDTVGFIRELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNDVL 301

Query: 323 ----------IFIGTKSDLYSTYTEEYD------------HLISSFTGEGLEELINKIKS 360
                     + +  K D         D              +S+ TG+GL+ L   I  
Sbjct: 302 HEIGADAIRQVLVFNKIDAVPELAARGDAVERDEYGNISRVFLSARTGQGLDTLRAAIAE 361

Query: 361 ILSNKFKKLPFSIPSH 376
           I S+        +P  
Sbjct: 362 IASSDALAGTGLLPER 377


>gi|320353956|ref|YP_004195295.1| ferrous iron transport protein B [Desulfobulbus propionicus DSM
           2032]
 gi|320122458|gb|ADW18004.1| ferrous iron transport protein B [Desulfobulbus propionicus DSM
           2032]
          Length = 786

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 24/193 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   I ++G+ N GK++LFN L       V + PG T D  +         V++ DT GI
Sbjct: 2   NEMVIGVVGNPNCGKTTLFNCLTGAKQ-RVGNWPGVTVDRKSGSYRYGHCRVEVIDTPGI 60

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL 331
                    E + R F+    ADLI+ + + ++ +             +  +      D+
Sbjct: 61  YSLAASSLDEKVTRNFILSREADLIVNIVDASNIERNLYLTCQLLDMRVPMLIALNMMDM 120

Query: 332 YSTYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            +    E D               ++    G+++L   I   ++N  K     +      
Sbjct: 121 VAERKLEIDIQGLAQRLGCPVVPLTASKDAGIDQLKAAIFETVANGTKPAAQVVYP---- 176

Query: 380 LYHLSQTVRYLEM 392
              + +    L  
Sbjct: 177 -AAVQEARERLAA 188


>gi|217964558|ref|YP_002350236.1| GTP-binding protein HflX [Listeria monocytogenes HCC23]
 gi|217333828|gb|ACK39622.1| GTP-binding protein HflX [Listeria monocytogenes HCC23]
          Length = 407

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 117/337 (34%), Gaps = 56/337 (16%)

Query: 82  EFHVHGGIA---VVNGILEELAKMPNLRLANPGEFSRRAFE-----------NGKIDLLE 127
           E H     A   VV+ ++++L ++        G+    A             N ++   +
Sbjct: 27  ELHSLAKTANGEVVDELIQKLERVNQASFIGSGKLEELAALVEMHEADVVIFNSELSATQ 86

Query: 128 AESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKL-------THIRSFIE 173
             +++ ++ +      Q  L   +M      G+L   Y Q+   L         +     
Sbjct: 87  VRNISKVVEARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQGVSLSKLGG 146

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG----YKIVILGHSN 229
                   E       + +   +  +K  +  H+ Q +   I R      ++  ++G++N
Sbjct: 147 GIGSRGPGESKLEMDKRHIREKMHDIKAQL-RHVEQHRKRIIERRNTQSVFRFGLIGYTN 205

Query: 230 AGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           AGKS++FN L  +    +  +   +  TTR +        G+   ++DT G  +      
Sbjct: 206 AGKSTIFNRLTNETTLQEDKLFATLDPTTRKIRF----SGGFQALLTDTVGFIQDLPTTL 261

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYS 333
               + T  E  N D+++ + + ++   +                ++  + I  K D   
Sbjct: 262 IAAFRSTLEETANVDVLIHVVDASNPDYLQHETTVLSLLEELEMNHLPTLVIYNKMDQAP 321

Query: 334 T---YTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                 +  + LIS+   E  + +  ++  ++   + 
Sbjct: 322 ATFVPDQPENLLISALDQEAPDTIKQRMIQLIEKNWT 358


>gi|87311874|ref|ZP_01093986.1| GTP-binding protein Hflx [Blastopirellula marina DSM 3645]
 gi|87285405|gb|EAQ77327.1| GTP-binding protein Hflx [Blastopirellula marina DSM 3645]
          Length = 442

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 93/225 (41%), Gaps = 30/225 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEII---RNGYKIVILGHSNAGKSSLFNALAKK 242
               + V   I  LK+D++    QG+    +   RN   I I+G++NAGKS+L N L + 
Sbjct: 166 EVDRRLVEKRIRDLKDDLAKV--QGRREREVASRRNVMTISIVGYTNAGKSTLMNYLTEA 223

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D    T D  T    L  +  V +SDT G             K T  E   ADL
Sbjct: 224 QV-LAEDKLFATLDTRTRRWQLPHWGPVLLSDTVGFIRNLPHRLIASFKATLEEARQADL 282

Query: 302 ILLLKEINSK-------------KEISFPKNIDFIFIGTKSD-LYSTYTEEY-------D 340
           +L + + ++              +EI   +  D + +  K D +   +T E         
Sbjct: 283 LLHVADASNADVVNQISAVYEVLEEIGIEEK-DALLVLNKIDAVTDQHTLEVLLQRYPDA 341

Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHLS 384
            L+S+ TGEG E+    +   LS  F+ +   +   + R + +L+
Sbjct: 342 LLVSAKTGEGREKFALAVSDALSRSFRDVDVETGIDNGRLMAYLA 386


>gi|218438594|ref|YP_002376923.1| small GTP-binding protein [Cyanothece sp. PCC 7424]
 gi|218171322|gb|ACK70055.1| small GTP-binding protein [Cyanothece sp. PCC 7424]
          Length = 453

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 19/202 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +++    ++    ++ D+ +   +  L ++ +N  KI   G  + GKS++ NAL  + V 
Sbjct: 32  HWNYPPNIDLQSAVRTDLQTL--KSALEKLEQNVIKIATFGLVSRGKSAVVNALLGEKVL 89

Query: 246 IVTDIPGTTRDVLTIDLD--LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               + G T+   ++          +++ DT G+ E +     +           ADLIL
Sbjct: 90  QTGPLHGVTQWPRSVRWTPGSGKVQIELIDTPGLDEIEGEARAQM---AREVAYQADLIL 146

Query: 304 LLK--EINSKKEISF----PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
            +   +I   +  +           + +  K DLY     E D        +       K
Sbjct: 147 FVVAGDITRTEYQALWELRKSQKPILIVFNKIDLYP----EKDRQEIYQQLQTWATGKEK 202

Query: 358 IKSILSNKFKKLPFSIPSHKRH 379
           I  ILS +  K    + + + H
Sbjct: 203 I--ILSEELTKDEIVMVAAEPH 222


>gi|331005110|ref|ZP_08328513.1| GTP-binding protein HflX [gamma proteobacterium IMCC1989]
 gi|330421079|gb|EGG95342.1| GTP-binding protein HflX [gamma proteobacterium IMCC1989]
          Length = 451

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 109/312 (34%), Gaps = 32/312 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 115 RARTHEGKLQVELAQLHHMSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRVK 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I    + +     Q +   +  +   + ++G++NAGKS+LFN +    V    D    T
Sbjct: 174 SIEARLDKVRKQRDQSRRSRLRTSTPTVSLVGYTNAGKSTLFNHITDAGV-YAEDKLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     ++L       ++DT G          +  + T  E  ++ L+L + +   ++ 
Sbjct: 233 LDPTMRQINLPNVGKAVLADTVGFISHLPHRLIDAFRATLEEAAHSSLLLHVIDAADEER 292

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTE--------EYDHLISSFTGEGLEE 353
               +            ++  + I  K DL                   +S+ TGEG+E 
Sbjct: 293 PRNIEQVQEVLTEIGAADLPQLKIYNKIDLLEHAPRIDRDEHGVPVAVWLSAQTGEGVEL 352

Query: 354 LINKIKSILSNKFKKL----PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
           +   +   L ++  +     P  +P+    L     +V  +E  S +E+          +
Sbjct: 353 MFEALAECLGDRMIQATLRFPVVLPTELSRLRARLYSVEAIEDESYDEEGNSE----VQI 408

Query: 410 RLASVSLGKITG 421
            +  V L KI G
Sbjct: 409 NIPQVELLKILG 420


>gi|320537107|ref|ZP_08037081.1| putative ferrous iron transport protein B [Treponema phagedenis
           F0421]
 gi|320146052|gb|EFW37694.1| putative ferrous iron transport protein B [Treponema phagedenis
           F0421]
          Length = 941

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 74/202 (36%), Gaps = 21/202 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++   I   G  N+GKS+LFN +       V + PG T +  T +    G  V I+D  G
Sbjct: 3   QDQIHIAFAGQPNSGKSTLFNMMTGA-RQHVANYPGITVEKKTGNYQAFGQSVLITDLPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSD 330
                    +E + R F+  E  +L++ + + ++ +                I    K+D
Sbjct: 62  TYSLTSYSPEERVSRNFILFEKPNLLVNITDASNLERHLYLTFQLLEMQCPVIMYLNKTD 121

Query: 331 LYSTYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           + +    + D               S+   E  +EL   I    +    K P+ +   K 
Sbjct: 122 IATYQGLKIDIDKLSQTLGIPIIAGSAKRKEHAQELKQCIAE--TAGHTKNPYMLSYGKD 179

Query: 379 HLYHLSQTVRYLEMASLNEKDC 400
               L+  V  L+ A  N +D 
Sbjct: 180 MEACLAAIVERLQKAQKNAEDA 201


>gi|126658946|ref|ZP_01730088.1| Small GTP-binding protein domain [Cyanothece sp. CCY0110]
 gi|126619744|gb|EAZ90471.1| Small GTP-binding protein domain [Cyanothece sp. CCY0110]
          Length = 447

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 13/156 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
           +++    L     +K D+ +   +  L +I  N  KI   G  + GKS++ NAL  +++ 
Sbjct: 28  HWNYPPNLELQAAVKPDLQAL--KASLEKIENNVIKIATFGLVSRGKSAVINALMGQNIL 85

Query: 246 IVTDIPGTTRDVLTIDLD--LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               I G T+   ++     L    ++  DT G+ E  D  E+E + R       ADLIL
Sbjct: 86  DSGPIHGVTKWPQSVRWTPPLGNVTIEFIDTPGLDEI-DGKEREIMSRNI--ANEADLIL 142

Query: 304 LLK--EINSKKEISFPK----NIDFIFIGTKSDLYS 333
            +   +I   +  +  +        I +  K DLY 
Sbjct: 143 FIISEDITRTEYEALLQLKQAFKPIILVFNKIDLYP 178


>gi|193063717|ref|ZP_03044805.1| putative GTPase of unknown function subfamily [Escherichia coli
           E22]
 gi|260847115|ref|YP_003224893.1| hypothetical protein ECO103_5080 [Escherichia coli O103:H2 str.
           12009]
 gi|192930704|gb|EDV83310.1| putative GTPase of unknown function subfamily [Escherichia coli
           E22]
 gi|257762262|dbj|BAI33759.1| hypothetical protein ECO103_5080 [Escherichia coli O103:H2 str.
           12009]
          Length = 291

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 11/159 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G S  GKSSL N L + +V+ V+D+   TRDVL   L    + + I D  G+ E  
Sbjct: 39  IGIMGKSGTGKSSLCNELFQGEVSPVSDVNACTRDVLRFRLRSGRHSLVIVDLPGVGENG 98

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNIDFIFIGTKSDLY 332
               +         +   DL+L + + + +           +  P     +F+  ++D  
Sbjct: 99  RRDHEY-RALYRRMLPELDLVLWVIKADDRALTLDEQFWLGVMQPYRQKVLFVINQADKI 157

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                E+D L S  +      L  K  +I++      P 
Sbjct: 158 EP-CYEWDTLTSKPSTHQQGNLKAKQAAIMAMFKPHHPV 195


>gi|307570877|emb|CAR84056.1| GTP-binding protein [Listeria monocytogenes L99]
          Length = 409

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 117/337 (34%), Gaps = 56/337 (16%)

Query: 82  EFHVHGGIA---VVNGILEELAKMPNLRLANPGEFSRRAFE-----------NGKIDLLE 127
           E H     A   VV+ ++++L ++        G+    A             N ++   +
Sbjct: 29  ELHSLAKTANGEVVDELIQKLERVNQASFIGSGKLEELAALVEMHEADVVIFNSELSATQ 88

Query: 128 AESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKL-------THIRSFIE 173
             +++ ++ +      Q  L   +M      G+L   Y Q+   L         +     
Sbjct: 89  VRNISKVVEARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQGVSLSKLGG 148

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG----YKIVILGHSN 229
                   E       + +   +  +K  +  H+ Q +   I R      ++  ++G++N
Sbjct: 149 GIGSRGPGESKLEMDKRHIREKMHDIKAQL-RHVEQHRKRIIERRNTQSVFRFGLIGYTN 207

Query: 230 AGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           AGKS++FN L  +    +  +   +  TTR +        G+   ++DT G  +      
Sbjct: 208 AGKSTIFNRLTNETTLQEDKLFATLDPTTRKIRF----SGGFQALLTDTVGFIQDLPTTL 263

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYS 333
               + T  E  N D+++ + + ++   +                ++  + I  K D   
Sbjct: 264 IAAFRSTLEETANVDVLIHVVDASNPDYLQHETTVLSLLEELEMNHLPTLVIYNKMDQAP 323

Query: 334 T---YTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                 +  + LIS+   E  + +  ++  ++   + 
Sbjct: 324 ATFVPDQPENLLISALDQEAPDTIKQRMIQLIEKNWT 360


>gi|308233432|ref|ZP_07664169.1| GTP-binding protein HflX [Atopobium vaginae DSM 15829]
 gi|328944039|ref|ZP_08241504.1| GTP-binding protein [Atopobium vaginae DSM 15829]
 gi|327492008|gb|EGF23782.1| GTP-binding protein [Atopobium vaginae DSM 15829]
          Length = 461

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 17/173 (9%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSS 234
           F + E       +     I  +K  +++   Q K+   IR+    YKI ++G++NAGKS+
Sbjct: 167 FGQGESQLEIDRRLSREKIAHVKQQLAALEIQRKVQRSIRSSSPLYKIALVGYTNAGKST 226

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTF 293
           L N ++      V D    T D  T  + L       +SDT G  +       +  K T 
Sbjct: 227 LLNRISHSS-TYVKDELFATLDSTTRSITLPDTRRAVLSDTVGFIQKLPTELIDAFKSTL 285

Query: 294 LEVENADLILLLKEINSKKE-------ISFPKN-----IDFIFIGTKSDLYST 334
           L+V +ADL+L + +++S          +S   +     I ++ +  K D  ++
Sbjct: 286 LDVVSADLLLCVVDVSSAHAEKEMNVVLSILNDIGAGSIPYLIVANKIDRIAS 338


>gi|15835273|ref|NP_297032.1| GTP-binding protein HflX [Chlamydia muridarum Nigg]
 gi|270285446|ref|ZP_06194840.1| GTP-binding protein HflX [Chlamydia muridarum Nigg]
 gi|270289457|ref|ZP_06195759.1| GTP-binding protein HflX [Chlamydia muridarum Weiss]
 gi|301336843|ref|ZP_07225045.1| GTP-binding protein HflX [Chlamydia muridarum MopnTet14]
 gi|7190694|gb|AAF39482.1| GTP-binding protein HflX [Chlamydia muridarum Nigg]
          Length = 447

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 96/265 (36%), Gaps = 23/265 (8%)

Query: 135 ISSETEMQRRLSM-EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           +++E  +Q  L+    +   L  ++G    + +          +  ++ ++     +E +
Sbjct: 141 LTAEAGLQVELAQARYLLPRLKRMWGHLSRQKSGGSGGGFVKGEGEKQIELDRRIVRERI 200

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           + +     ++     + +  +         ++G++N+GKS+L N L   +     +    
Sbjct: 201 HKLSKELKNVERQRKERRKAKKRNQIPTFALIGYTNSGKSTLLNLLTSAE-TYAENKLFA 259

Query: 254 TRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T    L  G  V ++DT G             K T     + D++L + + +   
Sbjct: 260 TLDPKTRRCVLPCGQRVLLTDTVGFIRKLPHTLVAAFKSTLEAALHEDILLHVVDASHPL 319

Query: 313 EISF------------PKNIDFIFIGTKSDLYST--------YTEEYDHLISSFTGEGLE 352
            +               ++   I +  K D  +                 +S+ TGEG+ 
Sbjct: 320 ALEHVETTKAILLELGIEHPQVITVLNKIDKVTNGSVAAKLRLLSPSPVCVSAKTGEGIR 379

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK 377
           +L+  +  ++  ++ ++   +P  +
Sbjct: 380 DLLQAMADMVQEEYPQVTLHLPYKE 404


>gi|319901664|ref|YP_004161392.1| ferrous iron transport protein B [Bacteroides helcogenes P 36-108]
 gi|319416695|gb|ADV43806.1| ferrous iron transport protein B [Bacteroides helcogenes P 36-108]
          Length = 823

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 26/215 (12%)

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
              I  + +  E +   +F   + L++ + L  +    ++ GK     R    + ++G+ 
Sbjct: 68  MIEIIGEQEVGERQIQPDFH--KGLSEDIHLDEECLKRLALGK-----RRTINVALVGNP 120

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
           N GK+SLFN  +      V +  G T D      D +GY  +I D  G         +E 
Sbjct: 121 NCGKTSLFNIASGSHEH-VGNYSGVTVDAKEGYFDFQGYHFRIVDLPGTYSLSAYSPEEI 179

Query: 289 IKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342
             R  +  E  D+I+ + + ++ +            N+  +      D         D++
Sbjct: 180 YVRRHIINETPDIIVNVVDSSNLERNLYLTTQLIDMNVRMVIALNMYDELEASGNTLDYM 239

Query: 343 I------------SSFTGEGLEELINKIKSILSNK 365
                         S +G+G+E+L + I +I    
Sbjct: 240 KLGQLFGVPMLPTVSRSGKGIEQLFHLIINIYEGG 274


>gi|315173787|gb|EFU17804.1| GTP-binding protein HflX [Enterococcus faecalis TX1346]
          Length = 413

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLMKELALENISCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 SEDKERLVQAIRAQMMELLEPYQLEISPTDGQL 372


>gi|196007528|ref|XP_002113630.1| hypothetical protein TRIADDRAFT_57257 [Trichoplax adhaerens]
 gi|190584034|gb|EDV24104.1| hypothetical protein TRIADDRAFT_57257 [Trichoplax adhaerens]
          Length = 378

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 9/146 (6%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ +LG  NAGKS+L N L  + V  V   P TTR+  +  +      + + D+ G   
Sbjct: 49  LKVALLGEPNAGKSTLTNVLVGRKVVPVCRKPQTTRERSSGIITFGSTQIVLVDSPGTLS 108

Query: 280 TDDIVEKEGIKRTFLE-----VENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334
             DI  K  + +           +ADL+ +L ++ +K+            +     + S 
Sbjct: 109 R-DIRRKYYMSKALATGPRDCATDADLLAVLVDVGNKRTRDHLSEEILEILHEFDTIPSV 167

Query: 335 YTEEYDHLISSFTGEGLEELINKIKS 360
                 + +     E L +LI+K+  
Sbjct: 168 LVL---NKVDVIRKEILLDLIDKLTD 190


>gi|184156130|ref|YP_001844470.1| GTPase [Lactobacillus fermentum IFO 3956]
 gi|183227474|dbj|BAG27990.1| GTPase [Lactobacillus fermentum IFO 3956]
          Length = 425

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 120/339 (35%), Gaps = 50/339 (14%)

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           E  KI +++  +L   I ++    R         ++     Q   +L  + +     LD 
Sbjct: 93  EATKIRVIDRTALILEIFAQRAQSREA-------KIQVQIAQLQYRLPRLHTAANQSLDQ 145

Query: 179 -----------SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VI 224
                         E       + +   I  L+N++       +     R+   I    +
Sbjct: 146 QTGGGAGFANRGSGETQIEMDRRVIQKQIAHLRNELKEIAKSEETKRAKRDRDTIPTAAL 205

Query: 225 LGHSNAGKSSLFNALAKKDVAIVT--------DIPGTTRDVLTIDLDLEGYL-VKISDTA 275
           +G++NAGKS++ N L   +   V+        D+   T D     L L       +SDT 
Sbjct: 206 VGYTNAGKSTIMNQLV--ERFGVSSEKKVFEKDMLFATLDTSVRQLTLPDQKRFLLSDTV 263

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFI 323
           G          E  K T  E  +ADL++ + + +                    +NI  +
Sbjct: 264 GFVSKLPTHLIEAFKSTLAEAASADLLIQVIDYSDPHHEEMMATTDETLRQIGIENIPMV 323

Query: 324 FIGTKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           ++  K+D     + T   E   ++S+     ++ ++  I+  L   +++    +P    H
Sbjct: 324 YVFNKADKTEVSFPTMEGEDRVIVSAKQDSSIDLIVKVIRQHLFKDYQEATLLVPFADGH 383

Query: 380 -LYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSL 416
            + +L++    L+   L +     L+I  E+L      L
Sbjct: 384 VVSYLNEHTNILDTDYLPDGTKLRLEIAPEDLHRFQKYL 422


>gi|158334928|ref|YP_001516100.1| GTP-binding domain-containing protein [Acaryochloris marina
           MBIC11017]
 gi|158305169|gb|ABW26786.1| GTP-binding domain protein [Acaryochloris marina MBIC11017]
          Length = 516

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 93/260 (35%), Gaps = 36/260 (13%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDI--SSHISQGKLGEII--RNGYKIVILGHSNAGKSS 234
           +++ D    + + V   I  +++++   + + + +       R   KIV+ G  +AGK+S
Sbjct: 82  TDKVDAAASNLRAVRRQIQQIQDEVTRQALLKETRQMAKTFTRRELKIVVFGTGSAGKTS 141

Query: 235 LFNALAKKDVAIVTDIPGTT--RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292
           L N +  + V  V    GTT         L      + ++DT G+ E   +   E  +  
Sbjct: 142 LVNGILGQMVGEVGATIGTTAVGQTFRCQLRSVDQALLVTDTPGLSE-PGVAGTEREQAA 200

Query: 293 FLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTYTEEYDHLISSF 346
                 ADL+L + + +  +    P           + +  K+D Y+   ++        
Sbjct: 201 RKLATEADLLLFVVDGDLTQSEYQPLRALGRMGKRSLLVFNKTDCYTQTDQDLIQ----- 255

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS---------QTVRYLEMASLNE 397
                     ++   + N  +       + +     L+              L+  S   
Sbjct: 256 ---------QRLHERVQNWIQPEDVVAIAARPQPVRLASGEILEPEPDLKALLQRISRIL 306

Query: 398 KDCGLDIIAENLRLASVSLG 417
           +  G D+ A+N+ L S  LG
Sbjct: 307 RQEGEDLFADNILLQSQRLG 326


>gi|312880570|ref|ZP_07740370.1| small GTP-binding protein [Aminomonas paucivorans DSM 12260]
 gi|310783861|gb|EFQ24259.1| small GTP-binding protein [Aminomonas paucivorans DSM 12260]
          Length = 598

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 20/156 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K++++G+ N GKS+LF+ L     A+ ++ PGTT   L   L       ++ D  G    
Sbjct: 28  KLLLVGNPNVGKSALFSRLTGTH-ALSSNYPGTTVGFLEGRLAHGERCYRLVDVPGAYTL 86

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSD---- 330
           +   E E I  + +  E AD  +L+ +  + +           + +  +      D    
Sbjct: 87  EATNEAEEIA-SRIVDEGADAAILVLDATALERNLVLALEVLERKLPALVALNMVDEARH 145

Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELINKI 358
                                 + TG+G++EL++++
Sbjct: 146 KGISVDPAALEEALGIPVVSTVAVTGQGVKELLDRL 181


>gi|332796492|ref|YP_004457992.1| GTP-binding proten HflX [Acidianus hospitalis W1]
 gi|332694227|gb|AEE93694.1| GTP-binding proten HflX [Acidianus hospitalis W1]
          Length = 364

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 73/215 (33%), Gaps = 36/215 (16%)

Query: 190 KEVLNDILFLKNDI--SSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAI 246
           +     I  +  ++     + + ++ +   NG   + I G++NAGK+S+FN L       
Sbjct: 146 RLYHRKIAKISKELMHIKELRESQVKQHESNGIPTVAITGYTNAGKTSIFNILTGLHQK- 204

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
           V     TT       + + G  + + DT G          E    T  E++ AD+ILL+ 
Sbjct: 205 VDSSMFTTTAPKRFKISINGQKIMLVDTVGFIRGIPPQIIEAFFVTLSEIKYADIILLVV 264

Query: 307 EINSKKEISFP--------------KNIDFIFIGTK------------SDLYSTYTEEY- 339
           +I+ +  +                      + +  K            SDL    + E  
Sbjct: 265 DISLEDTLILEMLKSSFSTLRELGISGKPILIVANKTDKIPYEEIDRRSDLIYKISNEIY 324

Query: 340 -----DHLISSFTGEGLEELINKIKSILSNKFKKL 369
                    S+ T   L  L  KI   L   + + 
Sbjct: 325 SPIIGIIPFSAKTLYNLSNLKIKIAESLLMYYNQE 359


>gi|254459845|ref|ZP_05073261.1| GTP-binding protein Era [Rhodobacterales bacterium HTCC2083]
 gi|206676434|gb|EDZ40921.1| GTP-binding protein Era [Rhodobacteraceae bacterium HTCC2083]
          Length = 302

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 69/180 (38%), Gaps = 20/180 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-VALIGEPNAGKSTLTNRMVGAKVSIVTHKVQTTRARIRGVALEGASQLVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           + +    +++  +   +    +AD+++L+ E N           +    F ++       
Sbjct: 63  LFKPTRRLDRAMVAAAWGGAADADVVVLMIEANRGVTEGVERILEGLQDFGEHRKIALAI 122

Query: 327 TKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            K D         L     E Y  + +          ++ +K  L+ +  + P+  P  +
Sbjct: 123 NKIDRIKSEALLALSEKMNEAYPFVATFMISAERGHGVDALKEWLAGEVPEGPWLYPEDQ 182


>gi|20092288|ref|NP_618363.1| ferrous iron transport protein B [Methanosarcina acetivorans C2A]
 gi|19917529|gb|AAM06843.1| ferrous iron transport protein B [Methanosarcina acetivorans C2A]
          Length = 670

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 24/197 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
            ++ N  ++ + G+ N GK+++FNA+       V + PG T +      +  G++++I D
Sbjct: 5   NLVENKIRVALAGNPNVGKTTVFNAITGA-RQKVGNWPGVTVEKKVGTKEYAGHVLEIVD 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGT 327
             G          E + R ++  E  D+++ + +  + +              + +F   
Sbjct: 64  LPGTYSLTAYSADEVVARDYILEEKPDVVVQILDSTNLERNLYLSTQLLEMGTNLVFALN 123

Query: 328 KSDLYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            SDL     +E D               ++  G+G+  L++ I +            +P 
Sbjct: 124 MSDLSERRGDEVDILRLEKLLGTSLIKTTANEGKGINALLDAIITKA-----DSEAHLPH 178

Query: 376 HKRHLYHLSQTVRYLEM 392
              +   + + +R+LE 
Sbjct: 179 EIGYGKDVEEKIRHLEN 195


>gi|326392594|ref|ZP_08213937.1| HSR1-related GTP-binding protein [Thermoanaerobacter ethanolicus JW
           200]
 gi|325991365|gb|EGD50014.1| HSR1-related GTP-binding protein [Thermoanaerobacter ethanolicus JW
           200]
          Length = 175

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 60/159 (37%), Gaps = 16/159 (10%)

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRT 292
           +L NAL   +V  V +    T D     L L  G  V + DT G          E  K T
Sbjct: 1   TLLNALTNAEV-YVENKLFATLDPTARRLVLPSGREVILIDTVGFIRKLPHDLVEAFKST 59

Query: 293 FLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTE--E 338
             EV+ ADL+L + ++ S       K            N   I +  K DL     +  E
Sbjct: 60  LEEVKYADLLLHVIDVTSPDMEEKIKVVEKVLSDLGAINTPKINVFNKIDLLEVVPKGNE 119

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            +  IS     G ++L+  I+  +    + + F +P  K
Sbjct: 120 REVYISDKNKIGFDKLLQAIEREIFKDVEVVNFLLPYDK 158


>gi|295693628|ref|YP_003602238.1| GTP-binding protein [Lactobacillus crispatus ST1]
 gi|295031734|emb|CBL51213.1| GTP-binding protein [Lactobacillus crispatus ST1]
          Length = 421

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 84/215 (39%), Gaps = 26/215 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
             + + +   I  +K ++ +  SQ ++    RN     K+ ++G++NAGKS+  N L ++
Sbjct: 162 ELNRRTIGKQISAIKKELKAVASQEEIKAARRNQSRLPKVALVGYTNAGKSTTMNGLLRE 221

Query: 243 -------DVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFL 294
                      V ++   T D     +DL+  +   +SDT G          E  K T  
Sbjct: 222 FSKEAADKQVFVKNMLFATLDTSVRRIDLKDNFSFILSDTVGFISKLPHNLVESFKATLQ 281

Query: 295 EVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTY---TEEY 339
           E  +ADL++ + + +    +               K I  I    K+D         E  
Sbjct: 282 ETRDADLLINVVDASDPNMVQMIRTTQNVLDEIGVKGIPMITAYNKADKTDRNYPQIEGD 341

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D L S+   + ++ L + I   +   ++K    +P
Sbjct: 342 DILYSAIDPKSIKLLADLITKRVFANYEKFDLILP 376


>gi|325859643|ref|ZP_08172776.1| GTP-binding protein HflX [Prevotella denticola CRIS 18C-A]
 gi|327314434|ref|YP_004329871.1| GTP-binding protein HflX [Prevotella denticola F0289]
 gi|325482923|gb|EGC85923.1| GTP-binding protein HflX [Prevotella denticola CRIS 18C-A]
 gi|326944940|gb|AEA20825.1| GTP-binding protein HflX [Prevotella denticola F0289]
          Length = 415

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 17/188 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKD 243
               + +L  +  LK  + + I + K  +    G   ++ ++G++N GKS+  N LAK +
Sbjct: 181 EMDRRIILQRMSLLKQRL-AEIDRQKNTQRKNRGRLIRVALVGYTNVGKSTTMNLLAKSE 239

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V    +    T D     + +E     ++DT G          +  K T  EV  ADL+L
Sbjct: 240 V-FAENKLFATLDTTVRKVVVENLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLL 298

Query: 304 LLKEINS---KKEISFPK---------NIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEG 350
            + +I+    +++I             +   + +  K D Y     EE D   ++     
Sbjct: 299 HIVDISHPDFEEQIQVVNKTLADLGCADKPSMIVFNKIDNYHWVEKEEDDLTPATKENIT 358

Query: 351 LEELINKI 358
           L+EL    
Sbjct: 359 LDELKRTW 366


>gi|317472649|ref|ZP_07931964.1| GTP-binding protein HflX [Anaerostipes sp. 3_2_56FAA]
 gi|316899826|gb|EFV21825.1| GTP-binding protein HflX [Anaerostipes sp. 3_2_56FAA]
          Length = 412

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 77/207 (37%), Gaps = 23/207 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   I  LK +++  I   ++    R       + I+G++NAGKS+L N     
Sbjct: 163 EMDRRLIRTRISHLKTELAGVIKHREVQRKQRQKNHTPVVCIVGYTNAGKSTLLNHFTDA 222

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D    T D  T  ++L  G  V ++DT G          +  K T  E + +D+
Sbjct: 223 GV-LEEDQLFATLDPTTKSVELNSGQTVLMTDTVGFIRKLPHHLVDAFKSTLEEAKYSDI 281

Query: 302 ILLLKEINSKKEISF------------PKNIDFIFIGTKSD------LYSTYTEEYDHLI 343
           IL + + ++                   K+   I    K D      L      +    I
Sbjct: 282 ILHVVDCSNPFMEQQMEAVYETLGQLGIKDTPVITAFNKIDRTGKNSLLKDVRADETVKI 341

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLP 370
           S+  G G  +L+  I+ +L  +   L 
Sbjct: 342 SAKEGTGTSDLLRVIEDVLKKQKIYLE 368


>gi|299783613|gb|ADJ41611.1| GTP-binding protein HflX [Lactobacillus fermentum CECT 5716]
          Length = 425

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 120/339 (35%), Gaps = 50/339 (14%)

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           E  KI +++  +L   I ++    R         ++     Q   +L  + +     LD 
Sbjct: 93  EATKIRVIDRTALILEIFAQRAQSREA-------KIQVQIAQLQYRLPRLHTAANQSLDQ 145

Query: 179 -----------SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VI 224
                         E       + +   I  L+N++       +     R+   I    +
Sbjct: 146 QTGGGAGFANRGSGETQIEMDRRVIQKQIAHLRNELKEIAKSEETKRAKRDRDTIPTAAL 205

Query: 225 LGHSNAGKSSLFNALAKKDVAIVT--------DIPGTTRDVLTIDLDLEGYL-VKISDTA 275
           +G++NAGKS++ N L   +   V+        D+   T D     L L       +SDT 
Sbjct: 206 VGYTNAGKSTIMNQLV--ERFGVSSEKKVFEKDMLFATLDTSVRQLTLPDQKRFLLSDTV 263

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFI 323
           G          E  K T  E  +ADL++ + + +                    +NI  +
Sbjct: 264 GFVSKLPTHLIEAFKSTLAEAASADLLIQVIDYSDPHHEEMMATTDETLRQIGIENIPMV 323

Query: 324 FIGTKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           ++  K+D     + T   E   ++S+     ++ ++  I+  L   +++    +P    H
Sbjct: 324 YVFNKADKTEVSFPTMEGEDRVIVSAKQDSSIDLIVKVIRQHLFKDYQEATLLVPFADGH 383

Query: 380 -LYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSL 416
            + +L++    L+   L +     L+I  E+L      L
Sbjct: 384 VVSYLNEHTNILDTDYLPDGTKLRLEIAPEDLHRFQKYL 422


>gi|33240483|ref|NP_875425.1| membrane associated GTPase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33238011|gb|AAQ00078.1| Membrane associated GTPase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 520

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 97/235 (41%), Gaps = 26/235 (11%)

Query: 199 LKNDISSHISQGKL----GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           ++N I++   + +      E++R    + + G  ++GK++L  +L  K V  V    G+T
Sbjct: 97  IQNQIAAQALRYEKQRVEKELLRGDLLVAVFGPGSSGKTALVRSLLNKIVGHVAPSMGST 156

Query: 255 RDVLTIDLDLEG--YLVKISDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLLKEIN 309
                  L L+     +KI DT GI E        EKE I +       ADLI+ + + +
Sbjct: 157 TKTNIYRLKLKSLRRGLKIIDTPGILEGGVHGRSREKEAIIKA----SQADLIIFVVDSD 212

Query: 310 SKK-EISFPKN-----IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363
            +  E+    N          +  KSDL     +     +     +G+ ++ N I +  S
Sbjct: 213 LRSYEMEMIVNLSKVGKKLFIVLNKSDLRGEKEKAKLISLLENRTQGIVDIENIIATSAS 272

Query: 364 NKFKKLPFSIP-SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417
            +   +  S P   K  +  L      ++  ++     G ++IA+N+ L   +LG
Sbjct: 273 PQTIPIIGSNPLQPKPDINQL------IKRMAIVLHQEGEELIADNILLQCRNLG 321


>gi|332686329|ref|YP_004456103.1| GTP-binding protein HflX [Melissococcus plutonius ATCC 35311]
 gi|332370338|dbj|BAK21294.1| GTP-binding protein HflX [Melissococcus plutonius ATCC 35311]
          Length = 408

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 80/222 (36%), Gaps = 14/222 (6%)

Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
           + + ++  +          L    G    +L+ +   I        + +      ++ + 
Sbjct: 111 LRARSKEGKLQVELAQLNYLLPRLGGQGKQLSRLGGGIGTRGPGETKLETDRRHVRDKIT 170

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +      I++H  + +        ++I ++G++NAGKS++ N L   +     +    T
Sbjct: 171 KVKQDIKKITAHRERNRKNRQQTELFQIGLIGYTNAGKSTILNLLTNAN-TYAENQLFAT 229

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D LT    L  G +V ++DT G  +       E  + T  E    DL+L +   +S+  
Sbjct: 230 LDPLTKKWQLPQGMVVTLTDTVGFIQELPTQLIEAFQSTLEESNEMDLLLHVVNASSENR 289

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLI 343
           +   K             +  + I  K D  +  T +  H  
Sbjct: 290 LEQEKTVNHLLHELHLDKLPILTIYNKMDQVNQQTFQPIHFP 331


>gi|229019524|ref|ZP_04176341.1| GTP-binding protein era [Bacillus cereus AH1273]
 gi|229025766|ref|ZP_04182165.1| GTP-binding protein era [Bacillus cereus AH1272]
 gi|229174974|ref|ZP_04302494.1| GTP-binding protein era [Bacillus cereus MM3]
 gi|228608642|gb|EEK65944.1| GTP-binding protein era [Bacillus cereus MM3]
 gi|228735474|gb|EEL86070.1| GTP-binding protein era [Bacillus cereus AH1272]
 gi|228741780|gb|EEL91963.1| GTP-binding protein era [Bacillus cereus AH1273]
          Length = 266

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +D P TTR+ +          V   DT GI +    +    +K     ++  D++L +  
Sbjct: 2   SDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVN 61

Query: 308 I----NSKKEISFPK----NIDFIFIGTKSD---------LYSTYTEEYDH----LISSF 346
                   +E    K          +  K D         L   Y + Y+      IS+ 
Sbjct: 62  AVEGFGRGEEFIIEKLKETKQPVFLVINKIDQLHPEQLLELIDQYRKLYEFAEIVPISAL 121

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            G  ++ LI  IK  L    +  P +  +     + +S+ +R
Sbjct: 122 DGNNVDALIGTIKKYLPEGPQYYPDNQVTDHPERFIISELIR 163


>gi|300362945|ref|ZP_07059115.1| GTP-binding protein HflX [Lactobacillus gasseri JV-V03]
 gi|300352995|gb|EFJ68873.1| GTP-binding protein HflX [Lactobacillus gasseri JV-V03]
          Length = 429

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 85/215 (39%), Gaps = 26/215 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAK- 241
             + + +   I  +K ++     Q ++    RN     ++ ++G++NAGKS+  N L   
Sbjct: 170 ELNRRTIGKQISAIKKELKDISKQEEIKSARRNNSRLPQVALVGYTNAGKSTTMNELLNV 229

Query: 242 ----KDVAIVTDIP--GTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
                +   V +      T D     +DL +     +SDT G          E  K T  
Sbjct: 230 FSDEANKKQVFEKNMLFATLDTSVRRIDLKDDLSFILSDTVGFISKLPHNLVESFKATLQ 289

Query: 295 EVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY---TEEY 339
           E ++ADL++ + + +    +   K            ++  I    K+DL        E  
Sbjct: 290 EAKDADLLINVVDASDHNMVQMIKTTQKVLNELNITDVPMITAYNKADLTERNYPQIEGN 349

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D L S+   E +++L N I   + + ++K+   +P
Sbjct: 350 DILYSAKDPESIKQLANLIVKKVFDNYEKINLVLP 384


>gi|89100987|ref|ZP_01173831.1| GTP-binding protein protease modulator [Bacillus sp. NRRL B-14911]
 gi|89084283|gb|EAR63440.1| GTP-binding protein protease modulator [Bacillus sp. NRRL B-14911]
          Length = 237

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
           ++I ++G++NAGKS+LFN LA+ + +   +    T D +T  L L  GYL   +DT G  
Sbjct: 18  FQIALVGYTNAGKSTLFNRLAEAE-SFEENQLFATLDPMTRKLILPSGYLALATDTVGFI 76

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIG 326
           +          + T  EV  ADL+L + +            +N   E    ++I  + + 
Sbjct: 77  QDLPTTLVAAFRSTLEEVSEADLLLHVIDSSNPDYFQHEKTVNKLLEDLDIQHIPQLAVY 136

Query: 327 TKSD------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RH 379
            KSD      + S  TE      S+F  +    L  KI+ ++    K     IPS + R 
Sbjct: 137 NKSDQVHPDFVPSAKTESVVI--SAFADQDRSMLKRKIEELVLGMMKPYQVEIPSTEGRL 194

Query: 380 LYHLSQTVRYLEMASLNEKDCGL 402
           L  L       E++   E +  L
Sbjct: 195 LSQLKNETILRELSFQEETEVYL 217


>gi|292656054|ref|YP_003535951.1| GTP-binding protein [Haloferax volcanii DS2]
 gi|291370085|gb|ADE02312.1| GTP-binding protein [Haloferax volcanii DS2]
          Length = 325

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 81/204 (39%), Gaps = 27/204 (13%)

Query: 183 DVQNFSSKEVLNDILFLKNDISS-HISQGKLGEIIRN-------GYKIVILGHSNAGKSS 234
           D+     K+    +  +  ++    +  G+  + +++          IV+ G+ N GKSS
Sbjct: 113 DLARKHRKQAFARMASVVEEVEDDLLRIGEARDALKDLPDIRPDEPAIVVAGYPNVGKSS 172

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
             N + +    I    P TT+ V     D +    +I DT G+ +  +    +  ++   
Sbjct: 173 FVNDVTRASNEI-ARYPFTTKGVQIGHFDRDRIRYQIIDTPGLLDRPEDERNDIERQAVS 231

Query: 295 EVEN-ADLILLLKEI---------------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338
            +E+ AD +L + +                ++ K     ++I  + +  KSD  +    +
Sbjct: 232 ALEHLADAVLFVADASGACGYPIESQLELRDAVKARFEERDIPVLTVCNKSDRSTDM--D 289

Query: 339 YDHLISSFTGEGLEELINKIKSIL 362
            D  +S  TGE +E +++     +
Sbjct: 290 ADIYMSVETGENVEAVLDAAVEAI 313


>gi|239616777|ref|YP_002940099.1| ferrous iron transport protein B [Kosmotoga olearia TBF 19.5.1]
 gi|239505608|gb|ACR79095.1| ferrous iron transport protein B [Kosmotoga olearia TBF 19.5.1]
          Length = 670

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 87/240 (36%), Gaps = 38/240 (15%)

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
           I +     I      + +LG+ N GK+S+FNAL       V + PG T +     +    
Sbjct: 18  IPEDNGSIIPTKRLSVALLGNPNVGKTSIFNALTGA-RQYVGNWPGVTVEKRIGIMYHNN 76

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNI 320
              KI+D  G          E I R FL  E+ D+++++ +  + +              
Sbjct: 77  IEFKITDLPGTYTLSATSPDEKIARDFLLYESPDIVIVISDAINLERSLYLLLQVLELRG 136

Query: 321 DFIFIGTKSD------------LYSTYTEEYDHLISSFTGEGLEELINKIKSI------- 361
           D I +    D                +      L S+ TGEG+ EL N +  +       
Sbjct: 137 DVILVINAIDEAKKSGIYIDKAEVEKHLGIPVVLTSAVTGEGIPELKNIMSKMKEGKVHV 196

Query: 362 -------LSNKFKKLPFSIPSHK--RHLYHLSQTVRYLEMASLNEKDCGLDI---IAENL 409
                  L  +  ++   + + +  ++       ++ LE  +  +K  G++I    ++ L
Sbjct: 197 HYVFDDELEEEISRISSILVARRELKNYDARWLAIKILEGDTEIQKLTGIEINREFSQEL 256


>gi|325270195|ref|ZP_08136802.1| GTP-binding protein HflX [Prevotella multiformis DSM 16608]
 gi|324987496|gb|EGC19472.1| GTP-binding protein HflX [Prevotella multiformis DSM 16608]
          Length = 415

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 15/187 (8%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDV 244
               + +L  +  LK  +     Q       R    ++ ++G++N GKS+  N LAK +V
Sbjct: 181 EMDRRIILQRMSLLKQRLVEIEKQKSTQRKNRGRLIRVALVGYTNVGKSTTMNLLAKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + +E     ++DT G          +  K T  EV  ADL+L 
Sbjct: 241 -FAENKLFATLDTTVRKVVVENLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLLH 299

Query: 305 LKEINS---KKEISFPK---------NIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGL 351
           + +I+    +++I             +   + +  K D Y     EE D   ++     L
Sbjct: 300 IVDISHPDFEEQIQVVNKTLADLGCADKPSMIVFNKIDNYHWVEKEEDDLTPATKENITL 359

Query: 352 EELINKI 358
           +EL    
Sbjct: 360 DELKRTW 366


>gi|325289615|ref|YP_004265796.1| small GTP-binding protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965016|gb|ADY55795.1| small GTP-binding protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 675

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 7/134 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I +LG  N+GKS+LFN L       V + PG T +      +  G    + D  G   
Sbjct: 4   MTIALLGQPNSGKSTLFNGLTGS-RQHVGNWPGKTVEQKEGHFNHAGRKYTVVDLPGTYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYS 333
                ++E + R ++    AD + +L + +  +   F            + +    D+ +
Sbjct: 63  LSAHSDEEIVTREYIAGGKADRVYILADASQLERTLFMLADYAGIRTPAVLLLNMMDVAA 122

Query: 334 TYTEEYDHLISSFT 347
              +  D  + S  
Sbjct: 123 KQGKTIDSAVISRK 136


>gi|325280777|ref|YP_004253319.1| ferrous iron transport protein B [Odoribacter splanchnicus DSM
           20712]
 gi|324312586|gb|ADY33139.1| ferrous iron transport protein B [Odoribacter splanchnicus DSM
           20712]
          Length = 788

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 73/188 (38%), Gaps = 27/188 (14%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVL 258
           +++I+  IS+            I ++G+ N GK+S FN     ++   V +  G T D  
Sbjct: 93  EDEIAREISEKSRT------INIALVGNPNCGKTSFFNRATGLRER--VGNYSGVTVDAK 144

Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
                 +GY + + D  G     +   +E   R F+   + DL+L + + +  +   F  
Sbjct: 145 QGTCHHKGYTINLIDLPGTYSITEYTPEEIYVREFITKHHPDLVLNVVDASCLERNLFLT 204

Query: 319 ------NIDFIFIGTKSDLYSTYTEEYDHLI------------SSFTGEGLEELINKIKS 360
                 NI  +      D  +      D+              ++  G G+E +++KI  
Sbjct: 205 TQLIDMNIRVVMALNMFDELTNEGSHLDYGYLGQLLGIPIVPTTASKGIGIEAVLDKIIE 264

Query: 361 ILSNKFKK 368
           +  ++ K+
Sbjct: 265 VFEDQAKE 272


>gi|170758584|ref|YP_001788400.1| GTP-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169405573|gb|ACA53984.1| GTP-binding protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 594

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 31/222 (13%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALA------ 240
             + +   I  LK ++       +     RN   K+ ++G++NAGKS+L N L       
Sbjct: 329 DKRHIKERIYDLKKELYKIKKVRETQRSKRNDIPKVSLVGYTNAGKSTLRNKLCDTGIAS 388

Query: 241 --KKDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGIRETDDIVEKEGIKRTFLEVE 297
              K+     D+   T D  T  + L    +  ++DT G          E  K T  EV 
Sbjct: 389 AQNKEKVFEADMLFATLDTTTRAISLPNNEIITLTDTVGFVRKLPHELVEAFKSTLEEVI 448

Query: 298 NADLILLLKEINS---KKEISFPK---------NIDFIFIGTKSD---------LYSTYT 336
            +DL+L + +I+S   +K+I             N   I +  K D             + 
Sbjct: 449 YSDLLLHVIDISSDTAEKQIDAVNNVLKELGTENKPIILVFNKIDKVSMEKLNYFRDKFK 508

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +E    IS+  G  LE+L+  I+  L  K  ++ + IP  K+
Sbjct: 509 DEKVIEISARLGINLEDLLKIIEKTLPYKLSEVEYIIPYDKQ 550


>gi|87124296|ref|ZP_01080145.1| hypothetical protein RS9917_11820 [Synechococcus sp. RS9917]
 gi|86167868|gb|EAQ69126.1| hypothetical protein RS9917_11820 [Synechococcus sp. RS9917]
          Length = 536

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 112/270 (41%), Gaps = 29/270 (10%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG--------EIIRNGYKIVILGHSNA 230
               D +  ++++ L  I  L   +   +++  L         E+ R    +V+ G  ++
Sbjct: 89  PPAPDNRRQAAEQSLESIDRLLEKLQDEVAREGLRQERERVAQELKRGDLTVVVFGTGSS 148

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEG 288
           GK+SL  AL ++ V  V    G+T +  +  L L+G    +K+ DT GI E+     +  
Sbjct: 149 GKTSLIRALLQEMVGEVGAAMGSTSETRSYRLRLKGLERGLKLIDTPGILESGRDGRERE 208

Query: 289 IKRTFLEVENADLILLLKEINSK-KEISFPKN-----IDFIFIGTKSDLYSTYTEEYDHL 342
            +    E   ADL+L++ + + +  E+   ++        + +  K DL     EE +  
Sbjct: 209 QE-ARREASRADLMLVVVDGDLRAAELEVTRHLAGLGKRLLLVLNKCDLR---GEEEERR 264

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH-LYHLSQTVRYLEMASLNEKDCG 401
           + +       +L++K   +        P S+P   R      ++  R L   ++     G
Sbjct: 265 LLALLHRRCGDLLSKDDVV---SASAAPQSVPRPGRSPWQPPAEVDRVLRRLAVVLHADG 321

Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDI 431
            +++A+N+ L    LG+  G      LLD 
Sbjct: 322 EELLADNILLQCRHLGE-AGR----DLLDR 346


>gi|330836926|ref|YP_004411567.1| ferrous iron transport protein B [Spirochaeta coccoides DSM 17374]
 gi|329748829|gb|AEC02185.1| ferrous iron transport protein B [Spirochaeta coccoides DSM 17374]
          Length = 718

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 26/186 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + + G+ N+GK++LFN L       V + PG T +     +        + D  GI   
Sbjct: 3   HVALAGNPNSGKTTLFNELTGSSQ-HVGNWPGVTVEKKDGYIK-GNKEFVVVDLPGIYSL 60

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYST 334
                +E + R +L  + ADLI+ + +  +               +  I      DL   
Sbjct: 61  SPYSAEEVVSRNYLIGDEADLIVNIVDATNMDRNLYLTTQLLETGLPMIVALNMYDLVKK 120

Query: 335 YTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
                D              IS+ TGEG+++L+++IK I +        + P        
Sbjct: 121 RKTVIDVKKLEKQLGCPVVPISAATGEGMKDLVSRIKEITTAGTVPGYLAFP------AE 174

Query: 383 LSQTVR 388
           L + VR
Sbjct: 175 LEKAVR 180


>gi|315634028|ref|ZP_07889317.1| GTP-binding protein HflX [Aggregatibacter segnis ATCC 33393]
 gi|315477278|gb|EFU68021.1| GTP-binding protein HflX [Aggregatibacter segnis ATCC 33393]
          Length = 460

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 111/329 (33%), Gaps = 42/329 (12%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSM-------EGMSGELSSLYGQWIDK-------- 164
           N  +   +A +L  L       +  L +           G+L     Q            
Sbjct: 114 NHTLTPAQARNLESLCDCRVVDRNGLILDIFAQRARSHEGKLQVELAQLKHLATRLVRRK 173

Query: 165 --LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L   +  +        + +      K  +N +      ++   +Q +      +   I
Sbjct: 174 TGLDQQKGAVGLRGPGETQLETDRRLIKVRINQLQNRLEKVAKQRNQNRQTRQKADIPTI 233

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETD 281
            ++G++NAGKS+LFN L   +V    D    T D     L L+      ++DT G     
Sbjct: 234 SLVGYTNAGKSTLFNLLTAANV-YAADQLFATLDPTLRRLSLKDVGTTILADTVGFLRDL 292

Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIGTKS 329
                   K T  E   A L+L + +            +N   E    +++  + +  K 
Sbjct: 293 PHDLISAFKSTLQETTEAALLLHVVDCADPRKLENIEAVNQVLEEIGAQDVPRLLVYNKI 352

Query: 330 DLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           D     T   ++          IS+ + +GLE L+  I+  L++   + P  +   +  +
Sbjct: 353 DQLENVTPHIEYDEKHQPSAVYISANSADGLELLLEAIRVRLTDYILQFPLQLSPSEGKI 412

Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            H    +  +E   ++E      +++  L
Sbjct: 413 RHALYELNCVEKEEISEYGEF--LLSIRL 439


>gi|158333671|ref|YP_001514843.1| ferrous iron transport protein B [Acaryochloris marina MBIC11017]
 gi|158303912|gb|ABW25529.1| ferrous iron transport protein B [Acaryochloris marina MBIC11017]
          Length = 786

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 73/202 (36%), Gaps = 24/202 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           I ++G+ N GK++LFN L   +     + PG T D  T      G    + D  G+    
Sbjct: 6   IALIGNPNCGKTTLFNDLTGTNQ-RTGNWPGVTVDQKTGHYHYNGTKTTVVDLPGVYSLD 64

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL 331
            E D     E I R +L    ADLIL + + ++ +             +  +      D+
Sbjct: 65  GEDDSTGLDEVIARDYLLSTEADLILNIVDASNLERNLYLTTQIMEMGLPMVVALNMMDI 124

Query: 332 YSTYTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
              +  + D              +S+F GEG+ E+ + I +   +  K  P  +      
Sbjct: 125 AQDHDLDIDAQVLSQRIGCPVSTMSAFLGEGIHEIKD-IINSYVDDPKNHPTFVTYPAVI 183

Query: 380 LYHLSQTVRYLEMASLNEKDCG 401
              + Q    ++    N K   
Sbjct: 184 EDAIHQLEPIVQQQGHNSKIAP 205


>gi|302390862|ref|YP_003826682.1| small GTP-binding protein [Acetohalobium arabaticum DSM 5501]
 gi|302202939|gb|ADL11617.1| small GTP-binding protein [Acetohalobium arabaticum DSM 5501]
          Length = 603

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 67/164 (40%), Gaps = 11/164 (6%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GKS+LF+ L   +V   ++  GTT +     ++ +  ++ I D  G   
Sbjct: 1   MNVFLMGNPNVGKSALFSRLTGTNVT-SSNYAGTTVEYTAGKMEWQDDVIDIIDVPGTYS 59

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
            D   + E +      + +ADLI+ + +  +       +N++      + D+       +
Sbjct: 60  LDPTNQAEEV--AVEMISDADLIINVLDATN-----LERNLNLTLQLLEQDVPMIVALNF 112

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
                     G+E  I+K++  L         +  +  R+L  L
Sbjct: 113 ---WDEVQHRGIEIDIDKLEEYLGVPVIPTSATKGNGIRNLIEL 153


>gi|297379709|gb|ADI34596.1| GTP-binding protein Era [Helicobacter pylori v225d]
          Length = 301

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 80/215 (37%), Gaps = 28/215 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQQFASQFLALVPLSAKKSQNLNALLKCISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAEN 408
                 + +R     +L      E D  +D   E 
Sbjct: 188 MRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEE 222


>gi|260662357|ref|ZP_05863252.1| GTP-binding protein HflX [Lactobacillus fermentum 28-3-CHN]
 gi|260553048|gb|EEX25991.1| GTP-binding protein HflX [Lactobacillus fermentum 28-3-CHN]
          Length = 425

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 120/339 (35%), Gaps = 50/339 (14%)

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           E  KI +++  +L   I ++    R         ++     Q   +L  + +     LD 
Sbjct: 93  EATKIRVIDRTALILEIFAQRAQSREA-------KIQVQIAQLQYRLPRLHTAANQSLDQ 145

Query: 179 -----------SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VI 224
                         E       + +   I  L+N++       +     R+   I    +
Sbjct: 146 QTGGGAGFANRGSGETQIEMDRRVIQKQIAHLRNELKEIAKSEETKRAKRDRDTIPTAAL 205

Query: 225 LGHSNAGKSSLFNALAKKDVAIVT--------DIPGTTRDVLTIDLDLEGYL-VKISDTA 275
           +G++NAGKS++ N L   +   V+        D+   T D     L L       +SDT 
Sbjct: 206 VGYTNAGKSTIMNQLV--ERFGVSSEKKVFEKDMLFATLDTSVRQLTLPDQKRFLLSDTV 263

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFI 323
           G          E  K T  E  +ADL++ + + +                    +NI  +
Sbjct: 264 GFVSKLPTHLIEAFKSTLAEAASADLLIQVIDYSDPHHEEMMATTDETLRQIGIENIPMV 323

Query: 324 FIGTKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           ++  K+D     + T   E   ++S+     ++ ++  I+  L   +++    +P    H
Sbjct: 324 YVFNKADKTEVSFPTMEGEDRVIVSAKQDSSIDLIVKVIRQHLFKDYQEATLLVPFADGH 383

Query: 380 -LYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSL 416
            + +L++    L+   L +     L+I  E+L      L
Sbjct: 384 VVSYLNEHTNILDTDYLPDGTKLRLEIAPEDLHRFQKYL 422


>gi|50122853|ref|YP_052020.1| putative GTPase HflX [Pectobacterium atrosepticum SCRI1043]
 gi|49613379|emb|CAG76830.1| putative GTP-binding phage-related protein [Pectobacterium
           atrosepticum SCRI1043]
          Length = 426

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 97/280 (34%), Gaps = 30/280 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+   +  +   + ++G++NAGKS+LFN +    V  V D    T
Sbjct: 173 QILLRLERVEKQREQGRRSRVRADVPTVSLVGYTNAGKSTLFNKITSAGV-YVADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     + ++      ++DT G             K T  E   A L+L + +    + 
Sbjct: 232 LDPTLRRIQVDDVGDTVLADTVGFIRQLPHDLVAAFKATLQETRQASLLLHVVDAADPRL 291

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                       EI     I  + +  K D+   +    D           +S+ TG+G+
Sbjct: 292 DENIDAVNDVLAEIE-ADEIPALLVMNKIDMLDDFVPRIDRNEENLPIRVWLSAQTGDGI 350

Query: 352 EELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
             L   +   LS +  +    +P      R  ++  Q + 
Sbjct: 351 PLLFQALTERLSGEIAQYTLHLPPQAGRLRSRFYQLQAIE 390


>gi|331671323|ref|ZP_08372121.1| GTP-binding protein HflX [Escherichia coli TA280]
 gi|331071168|gb|EGI42525.1| GTP-binding protein HflX [Escherichia coli TA280]
          Length = 426

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 95/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIV 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+   I  +   + ++ ++NAGKS+LFN +  +      D    T
Sbjct: 173 QIQSRLERVEKQREQGRQSRIKADVPTVSLVAYTNAGKSTLFNRIT-EARVYAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           +L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 QLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIE 390


>gi|296393368|ref|YP_003658252.1| GTP-binding proten HflX [Segniliparus rotundus DSM 44985]
 gi|296180515|gb|ADG97421.1| GTP-binding proten HflX [Segniliparus rotundus DSM 44985]
          Length = 511

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 95/268 (35%), Gaps = 38/268 (14%)

Query: 188 SSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV 244
             + +   I  L+ ++     +   K     RNG    VI+G++NAGKSSL  AL    V
Sbjct: 244 DRRRIRERISHLRGELKGMRKVRSTKRSLRERNGVPSAVIVGYTNAGKSSLLGALTGASV 303

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
            I  ++  T                 I+DT G          E    T  E   AD+++ 
Sbjct: 304 IIRDELFATLDPTTRKSWGETSGSFTITDTVGFVRHLPTQLVEAFASTLEEATGADVLVH 363

Query: 305 LKEINSKKEISFPK---------------NIDFIFIG-TKSDLYSTYTEEY-------DH 341
           + + +  +     +                     +   KSD     T            
Sbjct: 364 VVDASDPRPADQIRVVREILGDVFAKAQTPWPTEIVALNKSDAVDEATLAGLRIAFPEAT 423

Query: 342 LISSFTGEGLEELINKIKSILSNKFK-----KLPFSIPSHKRHLYH-LSQTVRYL----- 390
           L+S+ TGEG++EL  +I   L+ +       +L  ++P  +  L   +    R L     
Sbjct: 424 LVSARTGEGIDELKRRIGEALAVRSGAACLVELSLAVPEDRPDLLAKVCAAGRVLASEET 483

Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGK 418
           E  +L       D+ A+ LR  + SL +
Sbjct: 484 ESGTLVRALVPQDL-ADQLRGGATSLAE 510


>gi|114566205|ref|YP_753359.1| Fe2+ transport system protein B-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337140|gb|ABI67988.1| Fe2+ transport system protein B-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 601

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 19/153 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             IVI+G+ N GKS+  N L+  ++ +V++ PGT+  +    + +    + I DT GI  
Sbjct: 1   MVIVIIGNPNVGKSAFLNRLSGSNI-LVSNYPGTSTTISANPVKIGKKEITIYDTPGIYS 59

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSD--- 330
                E++   R     E  DLIL + + ++ +             +  + +  + D   
Sbjct: 60  IFSEGEEQKAIRDLFAREEVDLILNIVDASNLERNLVLSYELMDLGLPVLLLLNQIDRAR 119

Query: 331 ---------LYSTYTEEYDHLISSFTGEGLEEL 354
                    L S   +      S+ TGEGL+E+
Sbjct: 120 ALGIRINGKLLSELLKIPVIPFSATTGEGLQEV 152


>gi|217032968|ref|ZP_03438441.1| hypothetical protein HPB128_141g1 [Helicobacter pylori B128]
 gi|216945297|gb|EEC23972.1| hypothetical protein HPB128_141g1 [Helicobacter pylori B128]
          Length = 102

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK 306
           +R  + ++ +  + +    + +A+L + L 
Sbjct: 68  LRHQEKLLNQCMLSQALKAMGDAELCVFLL 97


>gi|261880722|ref|ZP_06007149.1| ferrous iron transporter B [Prevotella bergensis DSM 17361]
 gi|270332496|gb|EFA43282.1| ferrous iron transporter B [Prevotella bergensis DSM 17361]
          Length = 834

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 89/250 (35%), Gaps = 44/250 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R    + ++G+ N GK+SLFN ++    + V +  G T D     +  +GY + + D  G
Sbjct: 129 RRSISVALVGNPNCGKTSLFNFVSGAHES-VGNYSGVTVDAKEGHISWKGYHINLVDLPG 187

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----NIDFIFI--GTKSD 330
                    +E   R  L  +  D+++ + + ++ +   +      ++    +      D
Sbjct: 188 TYSLSAYSPEELYVRKQLTEQTPDVVINVIDSSNLERSLYLTTQLIDMHVRMVVALNMFD 247

Query: 331 LYSTYTEEYDHLISS------------FTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                 +  D    S             +GEG++ L++ +  I  +   + P     H  
Sbjct: 248 ETRRRGDHVDFEKLSQLFGVPMMPTVFKSGEGVKALLDMVIRIYEDTEDREPHFRHIHIN 307

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENLR-------LASVSLGKITGCVDVEQLL-- 429
           + + L   + Y++     E         E+LR       LA   L       +VE  +  
Sbjct: 308 YGHELEDGITYIQEHLKQE---------EHLRERFSTRYLAIKLLEN---DKEVEDYIRT 355

Query: 430 ----DIIFSK 435
               D IF  
Sbjct: 356 LPDADKIFRH 365


>gi|228923052|ref|ZP_04086345.1| GTP-binding protein era [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228954584|ref|ZP_04116609.1| GTP-binding protein era [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229071803|ref|ZP_04205018.1| GTP-binding protein era [Bacillus cereus F65185]
 gi|229081560|ref|ZP_04214058.1| GTP-binding protein era [Bacillus cereus Rock4-2]
 gi|229180577|ref|ZP_04307919.1| GTP-binding protein era [Bacillus cereus 172560W]
 gi|228603001|gb|EEK60480.1| GTP-binding protein era [Bacillus cereus 172560W]
 gi|228701765|gb|EEL54253.1| GTP-binding protein era [Bacillus cereus Rock4-2]
 gi|228711398|gb|EEL63358.1| GTP-binding protein era [Bacillus cereus F65185]
 gi|228805241|gb|EEM51835.1| GTP-binding protein era [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228836685|gb|EEM82033.1| GTP-binding protein era [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 266

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +D P TTR+ +          V   DT GI +    +    +K     ++  D++L +  
Sbjct: 2   SDKPQTTRNKIQGVYTENDAQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVN 61

Query: 308 I----NSKKEISFPK----NIDFIFIGTKSD---------LYSTYTEEYDH----LISSF 346
                   +E    K          +  K D         L   Y + ++      IS+ 
Sbjct: 62  AVEGFGRGEEFIIEKLKETKQPVFLVINKIDQLHPEQLLELIDQYRKLHEFAEIVPISAL 121

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            G  ++ LI  IK  L    +  P +  +     + +++ +R
Sbjct: 122 DGNNVDALIGTIKKYLPEGPQYYPDNQVTDHPERFIIAELIR 163


>gi|91793766|ref|YP_563417.1| ferrous iron transport protein B [Shewanella denitrificans OS217]
 gi|91715768|gb|ABE55694.1| ferrous iron transport protein B [Shewanella denitrificans OS217]
          Length = 772

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 13/134 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +  V +G+ NAGKS+LFNAL   +   V +  G T +  T    L+   V ++D  GI +
Sbjct: 5   FHCVTVGNPNAGKSTLFNALTGSNQQ-VGNWAGVTVEKKTGTFTLDDTQVFLTDLPGIYD 63

Query: 280 ------TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPK-NIDFIFIGT 327
                   D    E I + FL  +  D I+ L +  + +      I   +  +  + +  
Sbjct: 64  LLPAGNNCDCSLDEQIAQQFLANDRIDGIINLVDATNIERHLYLTIQLRELGLPMVLVLN 123

Query: 328 KSDLYSTYTEEYDH 341
           K D  +    E D 
Sbjct: 124 KIDAANKLGIEIDI 137


>gi|239626252|ref|ZP_04669283.1| small GTP-binding protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520482|gb|EEQ60348.1| small GTP-binding protein [Clostridiales bacterium 1_7_47FAA]
          Length = 393

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 92/256 (35%), Gaps = 66/256 (25%)

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTF 293
           + NA+  +D+A+V+ + GTT D +   ++L     V + DT GI +  ++     +K+++
Sbjct: 1   MLNAVTGQDLAVVSGVKGTTTDPVHKAMELLPLGPVVMIDTPGIDDEGELGGLR-VKKSY 59

Query: 294 LEVENADLILLLKE------INSKKEISFPKNIDFIFIG--TKSDLYSTYTEEYD----- 340
             +   D+ +L+ +         +  +   +      +    K+DL     +  +     
Sbjct: 60  QVLNKTDVAVLVVDHGQGMAAEDRALLKRIQEKHIPCVIACNKADLDDPAADPCNPGKQV 119

Query: 341 ----------------HLISSFTGEGLEELINKI----------KSILSNKFKKLPFSIP 374
                             +S+ TG+G++EL   +          + I+ +  +   F + 
Sbjct: 120 EAGGEPPEPYPASLPVIKVSALTGQGIDELKECLADLGKVQESGRRIVGDLLEPSDFVVL 179

Query: 375 --------SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK-----IT- 420
                      R +    QT+R +  A         D     L  A  +LGK     IT 
Sbjct: 180 VVPIDKAAPKGRLILPQQQTIRDILEADAVSIVLKED----ELAKALPALGKKPKMVITD 235

Query: 421 ----GCV---DVEQLL 429
               G V     E +L
Sbjct: 236 SQVFGRVAKDTPEDIL 251


>gi|312867386|ref|ZP_07727595.1| GTP-binding protein HflX [Streptococcus parasanguinis F0405]
 gi|311097087|gb|EFQ55322.1| GTP-binding protein HflX [Streptococcus parasanguinis F0405]
          Length = 403

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 97/275 (35%), Gaps = 26/275 (9%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 105 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 164

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  +    +   +    +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 165 RQLKAVEKNRETLREKRLESPVFKIGLIGYTNAGKSTIMNQLTSKSQFEADELFA-TLDA 223

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 224 TTKSIHLTGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPNHEEH 283

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSIL 362
            K             I  + +  K+D  + +T        IS+ +    E+L   +   L
Sbjct: 284 EKTVLSIMKDLDMLEIPRLTLYNKADKVADFTPTQTPFSLISARSETACEDLQALLLEKL 343

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
              F      +P  K +  H  +TV  ++   + E
Sbjct: 344 RELFVPFTIRVPFSKSYRTHDLETVAIIDQREIEE 378


>gi|298507297|gb|ADI86020.1| ferrous iron transport protein B, putative [Geobacter
           sulfurreducens KN400]
          Length = 747

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +  L  + +    + + G+ N+GKS+L NA+A      V +  G T +      + +G 
Sbjct: 20  QKASLRPVTKRVITVAVAGNPNSGKSTLINAIAGT-RLQVGNWAGVTVEKKEASFEFQGR 78

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
            +++ D  G        ++E I R +L  E  DLI+ + +  + +
Sbjct: 79  KIRLVDLPGTYSLSPYTQEEIIARDYLVHERPDLIINVVDATNLE 123


>gi|77918492|ref|YP_356307.1| ferrous iron transport protein B [Pelobacter carbinolicus DSM 2380]
 gi|77544575|gb|ABA88137.1| ferrous iron transport protein B [Pelobacter carbinolicus DSM 2380]
          Length = 720

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 19/193 (9%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G  I + G+ N+GK++LFNAL       V + PG T +        EG   ++ D  G+ 
Sbjct: 4   GTTIALAGNPNSGKTTLFNALTGA-RQHVGNYPGVTVERKEGSFIGEGQTFRLIDLPGMY 62

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFIGTKSDLY 332
                  +E + R FL  E    I+ + + ++ +   +         +         D  
Sbjct: 63  SLTAYSLEELVARDFLVQEKPAAIVNIIDASNLERNLYLTVQFMELGLPVCIALNMVDAA 122

Query: 333 STYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                E D                + +G+G  EL+     ++       P  I   +   
Sbjct: 123 QNRGIEIDAPKLSELMGIPVIPTIARSGQGKAELMQATGEMIDTVELSPPLIISYGEDID 182

Query: 381 YHLSQTVRYLEMA 393
             L++    +  A
Sbjct: 183 QALAEMECEIADA 195


>gi|317503093|ref|ZP_07961168.1| ferrous iron transport protein B [Prevotella salivae DSM 15606]
 gi|315665792|gb|EFV05384.1| ferrous iron transport protein B [Prevotella salivae DSM 15606]
          Length = 823

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
                   +   +      + +    + + +    +     +DI +     K+ +     
Sbjct: 60  SLRRSEAEMIEVVSESEIKTIKASQSHENKEINTQEDDSSIDDIPTEKQLEKIAQERHKI 119

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GK+SLFN  +      V +  G T D      + EGY   + D  G   
Sbjct: 120 INVALVGNPNCGKTSLFNFASGAHEH-VGNYSGVTVDAKVGHAEFEGYTFNLVDLPGTYS 178

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT------------ 327
                 +E   R  +  E  D+++ + + ++ +   +                       
Sbjct: 179 LSAYSPEELYVRKQIIDETPDIVINVIDASNLERNLYLTTQLIDMNLNMVCALNMFDETK 238

Query: 328 ----KSDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
               K DL   ST            TGEG++EL +++  +  N  ++ P+    H  H +
Sbjct: 239 KRGDKIDLNKLSTLFGVPMIPTVFKTGEGVKELFHQVIKLYENNGEEHPYVRHIHINHGH 298

Query: 382 HLSQTVRYLEMASLNEKDC 400
            +   ++ ++    N+ + 
Sbjct: 299 EIENGIQNIQKYLKNDVNV 317


>gi|301100808|ref|XP_002899493.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262103801|gb|EEY61853.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 877

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 80/229 (34%), Gaps = 44/229 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G  NAGKSS+ N L    V+ V+    TTRD +          +   DT G+ +
Sbjct: 220 LDLAVIGRPNAGKSSIMNRLLSVTVSAVSPKYNTTRDRILGIFTEGDVQLSFYDTPGLIK 279

Query: 280 TDDIVE--KEGIKRTFLEVENADLILLLKEINSKKEISFPKN------------IDFIFI 325
             +  E  +  +      ++  DL +L+ +   + + S  +                + +
Sbjct: 280 PKESHEYVQTLVTAAAETLQGVDLSMLVVDSVKRLDESALQALEKVLTTSAQVCSPTMLV 339

Query: 326 GTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH------ 379
             K DL     E+ +  +        +EL   I+ I S  +     S+            
Sbjct: 340 MNKYDLVGK-REQLNLDM------KTKELSQMIEEIYSKHYDAEGSSLSIDPLAYIGDNS 392

Query: 380 ----------LYHLSQTVRYLE-------MASLNEKDCGLDIIAENLRL 411
                     +  L +T+  L         +S++     LD++ E +R 
Sbjct: 393 IKVSATKGYGMDTLRKTLLSLAVDRPWSYHSSMHSDMSDLDLVTEIIRE 441


>gi|198455742|ref|XP_002138128.1| GA24581 [Drosophila pseudoobscura pseudoobscura]
 gi|198135377|gb|EDY68686.1| GA24581 [Drosophila pseudoobscura pseudoobscura]
          Length = 381

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 65/177 (36%), Gaps = 17/177 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
             I ++G  N GKS+  N +    V   +    TTR   T         +   DT G+  
Sbjct: 64  LHIAVIGVPNVGKSTFINNIINHRVCPTSAKVHTTRKSNTAICTTGQTQLVFYDTPGLVT 123

Query: 278 -RETDDIVEKEGIKRTFL-EVENADLILLLKEINSK-----------KEISFPKNIDFIF 324
            RE      ++  K ++   +++AD+I +++++++              +    N+    
Sbjct: 124 QREIRKHHLEQSFKSSYRHAIQHADVIAVMQDVSNSWTRKELHPTVLDTLKAYANLPSFL 183

Query: 325 IGTKSDLYST--YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           +  K D   +     +    +++ T  G        + + +    ++   IP  KR 
Sbjct: 184 VLNKIDALKSKRVLLDLIKTLTNDTLSGQRNGKGATRGLAAATTGQVAEGIPLSKRQ 240


>gi|195148958|ref|XP_002015429.1| GL11028 [Drosophila persimilis]
 gi|194109276|gb|EDW31319.1| GL11028 [Drosophila persimilis]
          Length = 381

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 65/177 (36%), Gaps = 17/177 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
             I ++G  N GKS+  N +    V   +    TTR   T         +   DT G+  
Sbjct: 64  LHIAVIGVPNVGKSTFINNIINHRVCPTSAKVHTTRKSNTAICTTGQTQLVFYDTPGLVT 123

Query: 278 -RETDDIVEKEGIKRTFL-EVENADLILLLKEINSK-----------KEISFPKNIDFIF 324
            RE      ++  K ++   +++AD+I +++++++              +    N+    
Sbjct: 124 QREIRKHHLEQSFKSSYRHAIQHADVIAVMQDVSNSWTRKELHPTVLDTLKAYANLPSFL 183

Query: 325 IGTKSDLYST--YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           +  K D   +     +    +++ T  G        + + +    ++   IP  KR 
Sbjct: 184 VLNKIDALKSKRVLLDLIKTLTNDTLSGQRNGKGATRGLAAATTGQVAEGIPLSKRQ 240


>gi|119946843|ref|YP_944523.1| GTP-binding protein, HSR1-related [Psychromonas ingrahamii 37]
 gi|119865447|gb|ABM04924.1| GTP-binding protein, HSR1-related [Psychromonas ingrahamii 37]
          Length = 430

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 106/292 (36%), Gaps = 24/292 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 114 RARTYEGRLQVELAQLRYLSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRARIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      +     QG+          + ++G++NAGKS+LFN L    V     +  T 
Sbjct: 173 TIKSRLAKVEKQREQGRRARKRNEVPTVALVGYTNAGKSTLFNHLTDAGVYAADQLFATL 232

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------- 307
              L     ++     ++DT G             K T  E  +A L+L + +       
Sbjct: 233 DPTLRKVDVVDVGTCILADTVGFIRHLPHDLVAAFKATLQETRDATLLLHIVDCADPSHH 292

Query: 308 -----INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEE 353
                + +  +     ++  + I  K D         D           +S+ TG G+E 
Sbjct: 293 DNIVAVQTVLDEIDAGDVPQLMIMNKIDDVDGIEPYVDFDELGKPVKVWLSAQTGIGVEL 352

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDI 404
           L   + ++LS + + L  +IPS +  L  L   +  +E  S ++  DC LDI
Sbjct: 353 LFESLTTLLSGQIRSLQLAIPSEEGKLRALFYQLDCIEHESYSDNGDCILDI 404


>gi|332520199|ref|ZP_08396663.1| GTP-binding proten HflX [Lacinutrix algicola 5H-3-7-4]
 gi|332044758|gb|EGI80952.1| GTP-binding proten HflX [Lacinutrix algicola 5H-3-7-4]
          Length = 409

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 22/164 (13%)

Query: 188 SSKEVLNDILFLKNDISSHISQ-----GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
             + V + I  LK  I +   Q     G  G+++R    + ++G++N GKS+L N ++K 
Sbjct: 167 DRRIVRDRIALLKAKIKTIDKQMSVQRGNRGKMVR----VALVGYTNVGKSTLMNTISKS 222

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
            V    +    T D     + ++     +SDT G          E  K T  EV  ADL+
Sbjct: 223 KV-FAENKLFATLDTTVRKVVIQNLPFLLSDTVGFIRKLPTQLVESFKSTLDEVREADLL 281

Query: 303 LLLKEINSKKEISFPK------------NIDFIFIGTKSDLYST 334
           L + +I+                     N   I +  K D Y  
Sbjct: 282 LHVVDISHPNFEDHIASVNKILGEIDSSNKPTIMVFNKIDAYQA 325


>gi|328475138|gb|EGF45922.1| GTP-binding protein [Listeria monocytogenes 220]
          Length = 428

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 101/296 (34%), Gaps = 51/296 (17%)

Query: 82  EFHVHGGIA---VVNGILEELAKMPNLRLANPGEFSRRAFE-----------NGKIDLLE 127
           E H     A   VV+ ++++L ++        G+    A             N ++   +
Sbjct: 48  ELHSLAKTANGEVVDELIQKLERVNQASFIGSGKLEELATLVEMHEADVVIFNSELSATQ 107

Query: 128 AESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKL-------THIRSFIE 173
             +++  + +      Q  L   +M      G+L   Y Q+   L         +     
Sbjct: 108 VRNISKAVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQGVSLSKLGG 167

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDI---SSHISQGKLGEIIRNGYKIVILGHSNA 230
                   E       + +   +  +K  +     H  +      I++ ++  ++G++NA
Sbjct: 168 GIGSRGPGESKLEMDKRHIREKMHDIKAQLTHVEQHRKRIIERRNIQSVFRFGLIGYTNA 227

Query: 231 GKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
           GKS++FN L  +    +  +   +  TTR +        G+   ++DT G  +       
Sbjct: 228 GKSTIFNRLTNETTLQEDKLFATLDPTTRKIRF----SGGFQALLTDTVGFIQDLPTTLI 283

Query: 287 EGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSD 330
              + T  E  N D+++ + + ++   +                ++  + I  K D
Sbjct: 284 AAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMD 339


>gi|299140609|ref|ZP_07033747.1| ferrous iron transport protein B [Prevotella oris C735]
 gi|298577575|gb|EFI49443.1| ferrous iron transport protein B [Prevotella oris C735]
          Length = 834

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 77/191 (40%), Gaps = 21/191 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             + ++G+ N GK+SLFN  +   +   V +  G T D      + EGY   + D  G  
Sbjct: 131 INVALVGNPNCGKTSLFNFASGAHER--VGNYSGVTVDAKVGHAEFEGYTFNLVDLPGTY 188

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLY 332
                  +E   R  +  +  D+I+ + + ++ +            N+  +      D  
Sbjct: 189 SLSAYSPEELYVRKQIIDKTPDVIINVLDASNLERNLYLTTQLIDMNLRMVCALNMFDET 248

Query: 333 STYTEEYDHLISS------------FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
              +++ D    S             +GEG+++L ++I  +  +  ++LP +   H  H 
Sbjct: 249 QRRSDKIDINKLSELFGVPMVPTVFKSGEGVKQLFHQIIELYESNGEELPHAHHIHINHG 308

Query: 381 YHLSQTVRYLE 391
           + +  ++ +++
Sbjct: 309 HEIENSITHIQ 319


>gi|209917480|ref|YP_002291564.1| hypothetical protein ECSE_0289 [Escherichia coli SE11]
 gi|209910739|dbj|BAG75813.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 291

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 11/159 (6%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G S  GKSSL N L + +V+ V+D+   TRDVL   L    + + I D  G+ E  
Sbjct: 39  IGIMGKSGTGKSSLCNELFRGEVSRVSDVNACTRDVLRFRLRSGRHSLVIVDLPGVGENG 98

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNIDFIFIGTKSDLY 332
              ++         +   DL+L + + + +           +  P     +F+  ++D  
Sbjct: 99  RRDQEY-RALYRRILPELDLVLWVIKADDRALTVDEQSWHGVMQPYRQKVLFVINQADKI 157

Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                E+D L S  +      L  K  +I++      P 
Sbjct: 158 EP-CHEWDTLTSKPSTHQQGNLKAKQAAIMAMFKPHHPV 195


>gi|189499925|ref|YP_001959395.1| GTP-binding proten HflX [Chlorobium phaeobacteroides BS1]
 gi|189495366|gb|ACE03914.1| GTP-binding proten HflX [Chlorobium phaeobacteroides BS1]
          Length = 433

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 119/317 (37%), Gaps = 37/317 (11%)

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIE 173
            RAF+   +D  E       I +++   +    +  +   L     +    L+  +  I 
Sbjct: 100 ERAFDCKVVDRTELILQIFAIRAQSSQAKMQVELAQLE-YLLPRLTRLWTHLSKQKGGIG 158

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDIS-SHISQGK-LGEIIRNGYKIVILGHSNAG 231
                  + +      +  ++ +     D++  H +Q K  G I R    + ++G++NAG
Sbjct: 159 TKGPGETQIETDRRLVRRRISFLKGKLKDVALQHATQTKDRGRITR----VALVGYTNAG 214

Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIK 290
           KS+L N L  +  A V D    T D  T  L+L+   +V +SDT G          E  +
Sbjct: 215 KSTLMNRLCPEAEAYVEDRLFATLDTKTRRLELKINKVVLLSDTVGFIRKLPHRLVESFR 274

Query: 291 RTFLEVENADLILLLKE-------------INSKKEISFPKNIDFIFIGTKSD------- 330
            T  EV  AD +L + +             + + +EI   ++ + I +  K D       
Sbjct: 275 STLDEVLQADFLLHVIDTSHEGFEEQMRVVLETLQEIGV-QHGNIINVFNKIDAVEDKET 333

Query: 331 ---LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
              L   Y E     +S+  G  L  L   + + +   +K    +I +H  +   +    
Sbjct: 334 LRSLRRKYPEAL--FVSAVRGINLNSLKEAVSAYIERDYK--ESTIRTHISNYKLIGYLY 389

Query: 388 RYLEMASLNEKDCGLDI 404
            + E+     +D  + +
Sbjct: 390 DHAEVIEKKHEDEDVVL 406


>gi|126739722|ref|ZP_01755414.1| GTP-binding protein Era [Roseobacter sp. SK209-2-6]
 gi|126719368|gb|EBA16078.1| GTP-binding protein Era [Roseobacter sp. SK209-2-6]
          Length = 301

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 24/172 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARVRGVAMEGDSQIVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           + +    +++  +   +    +AD+ILLL E +           +      +        
Sbjct: 63  LFQPRRRLDRAMVAAAWGGAADADIILLLVEAHRGITEGVERILEGLADIGEGRRVALAI 122

Query: 327 TKSD---------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNK 365
            K D         L     E++D      IS+  G G+E+L   I S L   
Sbjct: 123 NKIDRVQSEVLLGLTKDLNEKFDFAETFLISAERGHGVEDLRGWIASELPEG 174


>gi|16800402|ref|NP_470670.1| hypothetical protein lin1334 [Listeria innocua Clip11262]
 gi|16413807|emb|CAC96565.1| lin1334 [Listeria innocua Clip11262]
          Length = 407

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 107/284 (37%), Gaps = 40/284 (14%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWI---------- 162
           N ++   +  +++ ++ +      Q  L   +M      G+L   Y Q+           
Sbjct: 79  NSELSATQVRNISKIVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQG 138

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
             L+ +   I +      + ++     +E ++DI      +  H  +       ++ ++ 
Sbjct: 139 ASLSKLGGGIGSRGPGESKLEMDKRHIREKMHDIKAQLTHVERHRKRIIDRRNTQSVFRF 198

Query: 223 VILGHSNAGKSSLFNALAK----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
            ++G++NAGKS++FN L      ++  +   +  TTR +        G+   ++DT G  
Sbjct: 199 GLIGYTNAGKSTIFNRLTNETTLEEDKLFATLDPTTRKIRFE----GGFQALLTDTVGFI 254

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIG 326
           +          + T  E  N D+++ + + +    +                ++  + + 
Sbjct: 255 QDLPTTLIAAFRSTLEETANVDVLIHVVDASDPDYLQHETTVINLLEELEMSHLPTLIVY 314

Query: 327 TKSDLYST--YTEEYDH-LISSFTGEGLEELINKIKSILSNKFK 367
            K D   +    +  +H LIS+   +  +E+  ++  ++   + 
Sbjct: 315 NKMDKAPSTFVPDRPEHLLISALDQDAPKEIKQRMIELIEKNWT 358


>gi|15645144|ref|NP_207314.1| GTP-binding protein Era [Helicobacter pylori 26695]
 gi|2313632|gb|AAD07585.1| GTP-binding protein (era) [Helicobacter pylori 26695]
          Length = 302

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 78/217 (35%), Gaps = 28/217 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGYLVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +     +     +   DT G
Sbjct: 9   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEWYESQIIFLDTPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 69  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 128

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 129 THKQVLQKLQEYQQYDSQFLALVPLSAKKSQNLNALLECISQHLSPSAWLFEKDLMSDEK 188

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAENLR 410
                 + +R     +L      E D  +D   E  R
Sbjct: 189 MRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEER 225


>gi|327482306|gb|AEA85616.1| GTP-binding protein HflX [Pseudomonas stutzeri DSM 4166]
          Length = 433

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 113/329 (34%), Gaps = 29/329 (8%)

Query: 115 RRAFENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
            RA E   +D            + T E + ++ +  +    + L   W   L   +  I 
Sbjct: 94  ERALECRVLDRTGLILDIFAQRARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIG 152

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
                  + +      +  +  I      +     Q + G    +   + ++G++NAGKS
Sbjct: 153 LRGPGETQLETDRRLLRVRIRQIKQRLEKVRGQREQARRGRRRADIPSVSLVGYTNAGKS 212

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRT 292
           +LFNAL + +V    +    T D     L+LE    V ++DT G          E  + T
Sbjct: 213 TLFNALTESEV-YAANQLFATLDPTLRRLELEDVGPVILADTVGFIRHLPHKLVESFRAT 271

Query: 293 FLEVENADLILLLKEINSKKEISFPKNI------------DFIFIGTKSDLYSTYTEEYD 340
             E  NADL+L + + +  +     + +              + +  K DL      +  
Sbjct: 272 LEESSNADLLLHVIDAHEPERDQQIEQVLAVLGEIGANELPMLEVYNKLDLLEGIEPQIQ 331

Query: 341 ---------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                      +S+    GL+ L   +  +L +        +P     L      +  ++
Sbjct: 332 RDADGKPQRVWVSARDDLGLDLLRQAVAELLGDDLFVGTLCLPQRLGRLRAQFFELGAVQ 391

Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKIT 420
             + +E+   L      +RL  V L ++ 
Sbjct: 392 RETHDEEGGSL----LEVRLPRVELNRLI 416


>gi|146329223|ref|YP_001209486.1| hypothetical protein DNO_0576 [Dichelobacter nodosus VCS1703A]
 gi|146232693|gb|ABQ13671.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
          Length = 462

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 11/137 (8%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
            H+ +  LG+I +    +   G    GKS+L NAL+ K+V + + + G T+    +  + 
Sbjct: 70  QHLQRF-LGKIEQGTIHVATFGRVGVGKSTLLNALSGKNVFLTSVLHGQTQRSEEVLWEN 128

Query: 265 EGYLVK-ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKEISFP 317
            G  +  + DT GI   D+I  +E         +NAD+IL + + +      S  +    
Sbjct: 129 AGDGIVFLIDTPGI---DEIHGQEHALIAQTVAQNADIILFVIDSDMTDIELSALQQLHH 185

Query: 318 KNIDFIFIGTKSDLYST 334
           +    I +  KSD  S 
Sbjct: 186 QTQPIILVINKSDQLSA 202


>gi|124485212|ref|YP_001029828.1| hypothetical protein Mlab_0385 [Methanocorpusculum labreanum Z]
 gi|124362753|gb|ABN06561.1| small GTP-binding protein [Methanocorpusculum labreanum Z]
          Length = 624

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 15/197 (7%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +  +LG+ + GKS +FN L    V  V++ PGTT  +++  +        ++D  GI   
Sbjct: 4   RAALLGNPSVGKSLIFNHLTGLGV-EVSNYPGTTVGLMSGIVRYNETEFSLTDLPGIYSL 62

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDLYS 333
               ++E + R +L   +ADLI+ + +    +       + +  +    I +    D  S
Sbjct: 63  SGKSDEEKLVREYLITGDADLIVAVLDAKHLERNLYLLLQAAEIRKPLVIVLNMMDDARS 122

Query: 334 TYTEEYDHLISSFTGEGLEE-------LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
                    +S+  G  + E        + KI   +      +P  +P +  H+   ++ 
Sbjct: 123 AGKIIDAAALSAKFGVPVIETIATEGKNLEKIADYVIGDELPVPIIVPRYDHHIEAAARN 182

Query: 387 VRYLEMASLNEKDCGLD 403
           ++     SL E    L+
Sbjct: 183 LQKYHNLSLAEALFALE 199


>gi|12643474|sp|P56059|ERA_HELPY RecName: Full=GTPase Era
          Length = 301

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 78/217 (35%), Gaps = 28/217 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGYLVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +     +     +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEWYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQQYDSQFLALVPLSAKKSQNLNALLECISQHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAENLR 410
                 + +R     +L      E D  +D   E  R
Sbjct: 188 MRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEER 224


>gi|295098744|emb|CBK87833.1| small GTP-binding protein domain [Eubacterium cylindroides T2-87]
          Length = 382

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             +  +G+ N GK++LFNA    ++  V + PG T + +   +      + + D  G   
Sbjct: 5   ITVGFIGNPNCGKTTLFNAYTGANLK-VANWPGVTVERMEGAIKEHNMTIHVVDLPGTYS 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK------EISFPKNIDFIFIGTKSDLYS 333
                 +E + R F+  +  D+I+ + + +S +            +   +      D+  
Sbjct: 64  LTSYTMEEQVSRQFIVSDQVDVIIDVVDASSLERSLYLTLQLLELDKPMVMALNMMDIVE 123

Query: 334 TYTEEYDHLI------------SSFTGEGLEELINK 357
               E D                +   +G++ LI+ 
Sbjct: 124 KRGMEIDLHRLAEILGIPVVPVVARKKKGIQTLIHA 159


>gi|299822208|ref|ZP_07054094.1| GTP-binding protein HflX [Listeria grayi DSM 20601]
 gi|299815737|gb|EFI82975.1| GTP-binding protein HflX [Listeria grayi DSM 20601]
          Length = 416

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 98/250 (39%), Gaps = 34/250 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALA-- 240
             + + +   I  L+ ++   ++  ++    R   N   + ++G++NAGKS+  N L   
Sbjct: 157 ELNRRTIRYQIKNLRKELQDIVANREVMRRKRKKNNLPVVSLVGYTNAGKSTTMNGLVKL 216

Query: 241 --KKDVAIVT--DIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
              K+   V   D+   T +    D+ L +     ++DT G          +  + T  E
Sbjct: 217 FQGKENKQVFEKDMLFATLETSIRDIHLTDNKQFLLTDTVGFVSKLPHHLVQAFRSTLEE 276

Query: 296 VENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYST----YTEE 338
             +ADL++ + + +                E+   K+I  I+   K+D            
Sbjct: 277 ARDADLLIHVVDYSDPHYKLMMETTEKTLAELDV-KDIPIIYAFNKADKREDTDYPIERG 335

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQ-----TVRYLEM 392
              + S+    GL+ L+N+IK  L   ++K  F IP  + + + +L++        YLE 
Sbjct: 336 DTIIFSAREEAGLQLLVNRIKKELFADYEKATFLIPFEESKWVAYLNEVGDVAATEYLED 395

Query: 393 ASLNEKDCGL 402
            +    +   
Sbjct: 396 GTKITAEVAP 405


>gi|218884581|ref|YP_002428963.1| small GTP-binding protein [Desulfurococcus kamchatkensis 1221n]
 gi|218766197|gb|ACL11596.1| small GTP-binding protein [Desulfurococcus kamchatkensis 1221n]
          Length = 351

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 72/200 (36%), Gaps = 30/200 (15%)

Query: 197 LFLKNDISSH--ISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             ++ ++     I   +  + ++ G+  + I G++ AGK++LFNA+      +V   P T
Sbjct: 153 ARVRRELEELRRIRGIRRMQRLKAGFPHVAIAGYTCAGKTTLFNAITGLS-MLVGPEPFT 211

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
           T    +  +        ++DT G          E    T  E+  AD+I+ + + +   E
Sbjct: 212 TLSPKSRRIVYRDASFILTDTVGFIRDLPPEVIEAFYATLEEITAADVIVNVVDASKPIE 271

Query: 314 ISFPK--------------NIDFIFIGTKSDLYSTYT------------EEYDHLISSFT 347
               +              +   +    K DL   Y              E    ISS  
Sbjct: 272 RIRIELETTREILSRIGVHSKPMVVALNKIDLVDDYASIASEVKVLLASNETLIPISSVK 331

Query: 348 GEGLEELINKIKSILSNKFK 367
              ++ L++ +  ++   ++
Sbjct: 332 RINIDRLMDTVYMLVKGGYQ 351


>gi|157363646|ref|YP_001470413.1| GTP-binding protein HSR1-related [Thermotoga lettingae TMO]
 gi|157314250|gb|ABV33349.1| GTP-binding protein HSR1-related [Thermotoga lettingae TMO]
          Length = 416

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 79/214 (36%), Gaps = 22/214 (10%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNA 238
           E       +++   I+ +K  +S           +R       + ++G++NAGKSSL   
Sbjct: 154 EQKIEEKRRKIRERIVAIKRQLSELAKDRTQQRKMRLNSELPMVSVVGYTNAGKSSLIKI 213

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
           ++  D+ I   +  T   V+       G +    DT G  +       E  K T  E+  
Sbjct: 214 ISGSDILIANQLFSTLSPVVRRVKLPSGRVALFKDTVGFIKNVPHTIIEAFKSTLEEILF 273

Query: 299 ADLILLLKEINS-----KKEISF-------PKNIDFIFIGTKSDLYSTYTEEYDHL---- 342
           +DLILL+ +++      K + S           I  + +  K DL               
Sbjct: 274 SDLILLVVDLSDENFQEKLDTSLSVVYELGADEIPRLLVFNKVDLIPYSQRIKILQSYPG 333

Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
              IS+   +G+ EL++ I   L    K+   + 
Sbjct: 334 AILISAVKADGIRELLSCIDKELEKSEKEALLTF 367


>gi|325106895|ref|YP_004267963.1| GTP-binding protein HflX [Planctomyces brasiliensis DSM 5305]
 gi|324967163|gb|ADY57941.1| GTP-binding protein HflX [Planctomyces brasiliensis DSM 5305]
          Length = 462

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 89/240 (37%), Gaps = 25/240 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDV 244
               + +   +  L+  + +   + +     RN  + + ++G++NAGKS+L  AL  ++V
Sbjct: 169 ELDRRMLDKRVSELRKKLETVEKRRERLVASRNESFTVSLVGYTNAGKSTLMRALTGEEV 228

Query: 245 AIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            I   +   T D  T    +  +  V +SDT G             K T  E   ADL+L
Sbjct: 229 YIANQLFA-TLDTKTRKWSIPNWGEVLLSDTVGFVRDLPHHLVASFKSTLEEALQADLLL 287

Query: 304 LLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF----- 346
            + + ++ +            E     + + + +  K D    +T       S       
Sbjct: 288 HVVDASNPEAQLQIDTVEHVLEEIGASDKETLLVFNKVDRLPGHTPAEQTETSEDDIPEP 347

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406
            G+G E L      I+ NK++       +    L  L   V    +  L+     +DI+A
Sbjct: 348 EGDG-EPLDRSWYDIMRNKYRSAISVSAASGEGLELLRAAV----IERLSRSHQLVDIVA 402


>gi|168181770|ref|ZP_02616434.1| GTP-binding protein [Clostridium botulinum Bf]
 gi|237796536|ref|YP_002864088.1| GTP-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|182674964|gb|EDT86925.1| GTP-binding protein [Clostridium botulinum Bf]
 gi|229262062|gb|ACQ53095.1| GTP-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 594

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 31/222 (13%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALA------ 240
             + +   I  LK ++       +     RN   K+ ++G++NAGKS+L N L       
Sbjct: 329 DKRHIKERIYDLKKELYKIKKVRETQRSKRNDISKVSLVGYTNAGKSTLRNKLCDTGIAS 388

Query: 241 --KKDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGIRETDDIVEKEGIKRTFLEVE 297
              K+     D+   T D  T  + L    +  ++DT G          E  K T  EV 
Sbjct: 389 AQNKEKVFEADMLFATLDTTTRAISLPNNEIITLTDTVGFVRKLPHELVEAFKSTLEEVI 448

Query: 298 NADLILLLKEINS---KKEISFPK---------NIDFIFIGTKSD---------LYSTYT 336
            +DL+L + +I+S   +K+I             N   I +  K D             + 
Sbjct: 449 YSDLLLHVIDISSDTAEKQIEAVNNVLKELGTENKPIILVFNKIDKVSMEKLNYFRDKFK 508

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +E    IS+  G  LE+L+  I+  L  K  +  + IP  K+
Sbjct: 509 DEKFIEISARLGINLEDLLKIIEKTLPYKVSEAEYIIPYDKQ 550


>gi|88603403|ref|YP_503581.1| small GTP-binding protein domain-containing protein
           [Methanospirillum hungatei JF-1]
 gi|88188865|gb|ABD41862.1| Small GTP-binding protein domain [Methanospirillum hungatei JF-1]
          Length = 571

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 21/152 (13%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KIV++G+ N GKS +F+ L    V I ++ PGTT D       L    V I D  G    
Sbjct: 3   KIVLMGNPNVGKSVVFSRLTGTHV-ITSNFPGTTVDYSQGATCLGRERVFIIDAPGTYSL 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYST 334
           D     E +  +   +  AD+++ + +  + +           +N+  + +    D  + 
Sbjct: 62  DPTNPAEEV--SLRILNEADIVVNVLDATNLERNLILTLELLSRNVPLLVVLNLWDEAAH 119

Query: 335 YTEEYD------------HLISSFTGEGLEEL 354
              E D                + TGEG+ EL
Sbjct: 120 TGIEIDVSRLQELLGVPVIPTVAVTGEGIAEL 151


>gi|300312251|ref|YP_003776343.1| GTP-binding protein [Herbaspirillum seropedicae SmR1]
 gi|300075036|gb|ADJ64435.1| GTP-binding protein [Herbaspirillum seropedicae SmR1]
          Length = 374

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 103/300 (34%), Gaps = 25/300 (8%)

Query: 90  AVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS-ME 148
           AV +  LE +     L  A       R  +   +D            +++   +    + 
Sbjct: 61  AVADLQLELVIFNHALSPAQ-QRNLERLLKVRVLDRTSLILDIFAQRAKSHEGKVQVELA 119

Query: 149 GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHIS 208
            +    + L   W   L   +  I        + +       E +  +  +   +    +
Sbjct: 120 QLQHLSTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLGERVKALRAVLAKLRRQHA 178

Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
             +        + + ++G++NAGKS++FNALAK  V    +    T D  +  + L    
Sbjct: 179 TQRRARGRNETFSVSLVGYTNAGKSTIFNALAKAGV-YAANQLFATLDTTSRRVYLGEVG 237

Query: 269 -VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF----- 322
            V ISDT G          E  + T  E  +ADL+L + +  S   +   + ++      
Sbjct: 238 HVVISDTVGFIRELPHQLVEAFRATLEETIHADLLLHVVDAASPVRMEQIEEVNLVLKEI 297

Query: 323 -------IFIGTKSDL--------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                  I +  K D         Y  Y +     +S+ +G GL+ L   I + L    +
Sbjct: 298 GADHVPQILVWNKIDAAGLEPTVEYDEYGKIQRVFVSAKSGAGLDLLREAIAASLKAALE 357


>gi|298373163|ref|ZP_06983153.1| GTP-binding protein HflX [Bacteroidetes oral taxon 274 str. F0058]
 gi|298276067|gb|EFI17618.1| GTP-binding protein HflX [Bacteroidetes oral taxon 274 str. F0058]
          Length = 421

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAI 246
             + +L+ I  LK  +     Q  +    R N  ++ ++G++NAGKS++ N L  K   +
Sbjct: 184 DRRILLSKISLLKEKLRKIDQQKTIQRKNRENMIRVALVGYTNAGKSTIMN-LIGKSNVL 242

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +    T D     + ++     +SDT G          E  K T  E+  AD+++ + 
Sbjct: 243 AENKLFATLDTTVRKVIVDNLPFLLSDTVGFIRKLPHNLIESFKSTLDELNEADILVHVC 302

Query: 307 EI------------NSKKEISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLEE 353
           +I            N   +         I +  K D YS T  +E D  + +     L+E
Sbjct: 303 DISHPNFEEQFDVVNETIKSIVKTEKPTIVVFNKIDNYSFTEKDEADLSVRTKDNIPLDE 362

Query: 354 L 354
           L
Sbjct: 363 L 363


>gi|206901349|ref|YP_002251279.1| ferrous iron transport protein B [Dictyoglomus thermophilum H-6-12]
 gi|206740452|gb|ACI19510.1| ferrous iron transport protein B [Dictyoglomus thermophilum H-6-12]
          Length = 659

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 25/193 (12%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R   ++ ++G+ N GKS++FN L   +     + PG T +     ++ + Y+++I+D  G
Sbjct: 3   RIKIRVALVGNPNVGKSTVFNQLTGLNQ-HTGNWPGKTVEKKIGYVNKDKYILEITDLPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------------ISFPKNIDF 322
           I        +E I R F+  E  D+++L+ + +  +               I    N+  
Sbjct: 62  IYSLTANSLEEVISREFIIKEKPDIVILIVDASGLERNLYLLSQLRELTPNIIIGLNMID 121

Query: 323 IFIGTKSDLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           I    K  L     EE          +  G GL+EL+NK+  +          ++     
Sbjct: 122 ILKMKKYKLDIKKLEERLKIPIIPTIASKGIGLDELVNKVIEVY------EEDNLNPIGI 175

Query: 379 HLYHLSQTVRYLE 391
           H   L + ++ +E
Sbjct: 176 HYGDLEEDIKKIE 188


>gi|315230562|ref|YP_004070998.1| GTP-binding Era-like protein [Thermococcus barophilus MP]
 gi|315183590|gb|ADT83775.1| GTP-binding Era-like protein [Thermococcus barophilus MP]
          Length = 188

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 38/177 (21%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT---IDLDLEGY--------- 267
            K+ I+G  N GKS+L NAL  K V+   +IPGTT+ ++      + +            
Sbjct: 2   IKVAIIGAENVGKSTLMNALLGKRVSETAEIPGTTKSIIRKTFGKIKIPKTMKNPFGGAD 61

Query: 268 LVKISDTAGIRETDDIV-----EKEGIKRTFLEVENADLILLLKEINSKKE--------- 313
              + DTAG+ +           +E  K    E+ +AD+I+ + +               
Sbjct: 62  EFVLIDTAGLFDPKYEFRGKVLSEEKFKEILDEITSADIIIHMIDAQYGLHRGMEKLHHI 121

Query: 314 ISFPKNIDFIFIGTKSDLYS------------TYTEEYDHLISSFTGEGLEELINKI 358
           + F      I +  K DL                 E+   L+S  T EG  +L+  +
Sbjct: 122 LKFRYEKPIIVVINKIDLVPRERVEELRQIVKKRLEQEPILLSLVTYEGFNDLLKAL 178


>gi|167748941|ref|ZP_02421068.1| hypothetical protein ANACAC_03722 [Anaerostipes caccae DSM 14662]
 gi|167651563|gb|EDR95692.1| hypothetical protein ANACAC_03722 [Anaerostipes caccae DSM 14662]
          Length = 412

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 77/207 (37%), Gaps = 23/207 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   I  LK +++  I   ++    R       + I+G++NAGKS+L N     
Sbjct: 163 EMDRRLIRTRISHLKTELAGVIKHREVQRKQRQKNHTPVVCIVGYTNAGKSTLLNYFTDA 222

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
            V +  D    T D  T  ++L  G  V ++DT G          +  K T  E + +D+
Sbjct: 223 GV-LEEDQLFATLDPTTKSVELNSGQTVLMTDTVGFIRKLPHHLVDAFKSTLEEAKYSDI 281

Query: 302 ILLLKEINSKKEISF------------PKNIDFIFIGTKSD------LYSTYTEEYDHLI 343
           IL + + ++                   K+   I    K D      L      +    I
Sbjct: 282 ILHVVDCSNPFMEQQMEAVYETLGQLGIKDTPVITAFNKIDRTGKNSLLKDVRADETVKI 341

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLP 370
           S+  G G  +L+  I+ +L  +   L 
Sbjct: 342 SAKEGTGTSDLLRVIEDVLKKQKIYLE 368


>gi|124028000|ref|YP_001013320.1| GTPase [Hyperthermus butylicus DSM 5456]
 gi|123978694|gb|ABM80975.1| GTPase [Hyperthermus butylicus DSM 5456]
          Length = 375

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 61/176 (34%), Gaps = 33/176 (18%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            I I+G+++AGK+SLFNA+       V     TT       +   G      DT G    
Sbjct: 195 HIAIVGYASAGKTSLFNAITGLQK-PVGPEYFTTITPKRRAISFNGLRTVFIDTVGFIMR 253

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------------NIDFIFIG 326
                 E    T  E   AD+IL + +++    +   K              +   I   
Sbjct: 254 IPPEIIEAFHSTLEEAATADVILYVVDVSEPDTVIAEKLDEGLQTLRRIGVIDKPLIIAA 313

Query: 327 TKSDLYSTY------------------TEEYDHLISSFTGEGLEELINKIKSILSN 364
            K DL                        E    +S+ TG G+ +L+ +I ++L+ 
Sbjct: 314 NKIDLVPQEDIERLTRLLEGAASTLYPALEAVIPVSAKTGAGVAKLLCRIATLLAG 369


>gi|218130046|ref|ZP_03458850.1| hypothetical protein BACEGG_01631 [Bacteroides eggerthii DSM 20697]
 gi|317476540|ref|ZP_07935787.1| ferrous iron transporter B [Bacteroides eggerthii 1_2_48FAA]
 gi|217987766|gb|EEC54093.1| hypothetical protein BACEGG_01631 [Bacteroides eggerthii DSM 20697]
 gi|316907283|gb|EFV28990.1| ferrous iron transporter B [Bacteroides eggerthii 1_2_48FAA]
          Length = 823

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 24/201 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           D  +    E +++ + L  +    I+ GK     R    + ++G+ N GK+SLFN  +  
Sbjct: 80  DAVHLDYHEGMSEDMRLSEEELKRIALGK-----RRTINVALVGNPNCGKTSLFNIASGS 134

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
               V +  G T D      D +GY  +I D  G         +E   R  +  E  D+I
Sbjct: 135 HEH-VGNYSGVTVDAKEGYFDFQGYHFRIVDLPGTYSLSAYSPEEIYVRHHIINETPDII 193

Query: 303 LLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDH------------LIS 344
           + + + ++ +            N+  +      D         D+               
Sbjct: 194 INVVDSSNLERNLYLTTQLIDMNVRMVIALNMYDELEASGNTLDYVKLGQLFGVPMLPTI 253

Query: 345 SFTGEGLEELINKIKSILSNK 365
           S TG+G+E+L + I  I    
Sbjct: 254 SRTGKGIEQLFHVIIGIYEGG 274


>gi|260770600|ref|ZP_05879532.1| GTP-binding protein HflX [Vibrio furnissii CIP 102972]
 gi|260614430|gb|EEX39617.1| GTP-binding protein HflX [Vibrio furnissii CIP 102972]
 gi|315178343|gb|ADT85257.1| GTP-binding protein HflX [Vibrio furnissii NCTC 11218]
          Length = 429

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 87/258 (33%), Gaps = 33/258 (12%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + +  
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRE 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   +     Q + G   RN      + ++G++NAGKS+LFN +    V    D  
Sbjct: 170 RIKAILRRLERVAKQREQGRRARNRAEIPTVSLVGYTNAGKSTLFNRITSAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     +DL       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKIDLADVGPAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASD 288

Query: 311 KK-------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTG 348
           ++             EI     +  + +  K D         +           +S+  G
Sbjct: 289 ERFRENIQAVDDVLLEIE-ANEVPTLLVMNKIDNLEGQQPRIERDDEGVPRAVWVSAMDG 347

Query: 349 EGLEELINKIKSILSNKF 366
            G++ L   +   L ++ 
Sbjct: 348 LGIDLLFAALTERLVSQI 365


>gi|330445003|ref|ZP_08308657.1| GTP-binding proten HflX [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328493121|dbj|GAA03154.1| GTP-binding proten HflX [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 429

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 86/252 (34%), Gaps = 25/252 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +E + 
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRERIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     ++    QG+          I ++G++NAGKS+LFN +    V    D    T
Sbjct: 173 TILRRLEKVAKQRDQGRRARNRAEIPTISLVGYTNAGKSTLFNRITDAGV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     +++       ++DT G             K T  E + ADL+L + + +  + 
Sbjct: 232 LDPTLRKIEVADVGTAILADTVGFIRHLPHDLVAAFKATLKETQEADLLLHVVDASDDRF 291

Query: 313 -----------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                      E      +  + +  K D         +           +S+  G+G++
Sbjct: 292 RENIEAVETVLEEIDAGEVPALVVMNKIDNLEHAEPRIERDDEGVPRRVWVSAMEGQGID 351

Query: 353 ELINKIKSILSN 364
            L   +   LS 
Sbjct: 352 LLFQALTERLSG 363


>gi|238750072|ref|ZP_04611575.1| GTP-binding protein hflX [Yersinia rohdei ATCC 43380]
 gi|238711616|gb|EEQ03831.1| GTP-binding protein hflX [Yersinia rohdei ATCC 43380]
          Length = 433

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 113/354 (31%), Gaps = 50/354 (14%)

Query: 70  PSPESFTGEDSAE-----FHVHGGIAVV-NGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           P P+ F GE  AE         G   V+ +  L    +    RL                
Sbjct: 52  PHPKYFVGEGKAEEIADAVKASGASVVLFDHALSAAQERNLERLCE-------------C 98

Query: 124 DLLEAESLADLISSETEMQR----RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            +++   L   I ++         ++ +  +    + L   W   L   +  I       
Sbjct: 99  RVIDRTGLILDIFAQRARTHEGKLQVELAQLRHIATRLVRGWTH-LERQKGGIGLRGPGE 157

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            + +      ++ ++ IL     ++    QG+      +   + ++G++NAGKSSLFN +
Sbjct: 158 TQLETDRRLLRDRISLILSRLERVAKQREQGRRARTRADIPTVSLVGYTNAGKSSLFNKI 217

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
              DV    D    T D     +++       ++DT G             K T  E   
Sbjct: 218 TAADV-YAADQLFATLDPTLRRINVADVGDTVLADTVGFIRHLPHDLVAAFKATLQETRQ 276

Query: 299 ADLILLLKEINSKKEIS------------FPKNIDFIFIGTKSDLYSTYTEEYD------ 340
           A L+L + +    +                   I  + +  K DL   +    D      
Sbjct: 277 ASLLLHIIDAADPRVAENMAAVDSVLAEIEADEIPTLLVMNKIDLLDDFVPRIDRNEENL 336

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
                +S+ TG G+  L   +   LS +       +P      R  ++  Q + 
Sbjct: 337 PVRVWLSAQTGAGIPLLFQALTERLSGEIAHFELRLPPQAGRLRSRFYQLQAIE 390


>gi|116070707|ref|ZP_01467976.1| hypothetical protein BL107_13715 [Synechococcus sp. BL107]
 gi|116066112|gb|EAU71869.1| hypothetical protein BL107_13715 [Synechococcus sp. BL107]
          Length = 529

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 26/238 (10%)

Query: 197 LFLKNDISSHISQGKL----GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
             L++DI+    Q +      E+ R    +V+ G  ++GK+SL  AL +K V  V    G
Sbjct: 104 ERLESDIARESLQAERDRVNEELQRGDLVVVVFGTGSSGKTSLIRALLQKMVGDVGAPMG 163

Query: 253 TTRDVLTIDLDLEG--YLVKISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKE 307
            T++  +  L L+G    +++ DT GI E  D     E +  +R       ADL+L++ +
Sbjct: 164 LTKETRSYRLRLKGLSRGLQLVDTPGILEAGDDGLSREDQARRRAI----RADLLLVVVD 219

Query: 308 INSKK-EISFPK-----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            + +  E++  +         + +  K DL     E+    +      GL      + + 
Sbjct: 220 GDLRASELAVVRSIADLGKRLLLVLNKRDLRGVDEEKQLLQVLRSRCTGL------LSNA 273

Query: 362 LSNKFKKLPFSIPSH-KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
                   P SIP   +R L      +  L+  ++  +  G ++IA+N+ L   +L  
Sbjct: 274 DVLACSAAPQSIPQPGRRPLQPKPDVMDLLQRLAVVLQAEGEELIADNILLQCRNLDS 331


>gi|116630251|ref|YP_815430.1| GTPase [Lactobacillus gasseri ATCC 33323]
 gi|116095833|gb|ABJ60985.1| GTPase [Lactobacillus gasseri ATCC 33323]
          Length = 429

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 85/215 (39%), Gaps = 26/215 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAK- 241
             + + +   I  +K ++     Q ++    RN     ++ ++G++NAGKS+  N L   
Sbjct: 170 ELNRRTIGKQISAIKKELKDISKQEEIKSARRNNSRLPQVALVGYTNAGKSTTMNELLNV 229

Query: 242 ------KDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
                 K      ++   T D     +DL +     +SDT G          E  K T  
Sbjct: 230 FSDEANKKQVFEKNMLFATLDTSVRRIDLKDDLSFILSDTVGFISKLPHNLVESFKATLQ 289

Query: 295 EVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY---TEEY 339
           E ++ADL++ + + +    +   K            ++  I    K+DL        E  
Sbjct: 290 EAKDADLLINVVDASDHNMVQMIKTTQKVLNELNITDVPMITAYNKADLTERNYPQIEGN 349

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D L S+   E +++L N I   + + ++K+   +P
Sbjct: 350 DILYSAKDPESIKQLANLIVKRVFDNYEKINLVLP 384


>gi|295132086|ref|YP_003582762.1| HflX-like GTP-binding protein [Zunongwangia profunda SM-A87]
 gi|294980101|gb|ADF50566.1| HflX-like GTP-binding protein [Zunongwangia profunda SM-A87]
          Length = 406

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 17/163 (10%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L     + I +    +    G   ++ ++G++N GKS+L N ++
Sbjct: 161 ETEIETDRRIVRDKISLLKKKLATIDKQMEVQRGNRGQLVRVALVGYTNVGKSTLMNTIS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K +V    +    T D     + +      ++DT G          E  K T  EV  AD
Sbjct: 221 KSEV-FAENKLFATLDTTVRKVVIRNLPFLLTDTVGFIRKLPTQLVESFKSTLDEVREAD 279

Query: 301 LILLLKEINSK-------------KEISFPKNIDFIFIGTKSD 330
           L+L + +I+                EI        + +  K D
Sbjct: 280 LLLHVVDISHPNFEEHIDSVNQILDEIKSSDKPSVM-VFNKID 321


>gi|153865160|ref|ZP_01997782.1| Small GTP-binding protein [Beggiatoa sp. SS]
 gi|152145350|gb|EDN72219.1| Small GTP-binding protein [Beggiatoa sp. SS]
          Length = 153

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 5/126 (3%)

Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199
           +     S+   +  +  +  +       + S     L F E   +     + +   +  +
Sbjct: 12  DENLAQSLRQFNTRIYLVINKSEGIEKELVSAEFHRLGFPEVYAISAAHQQGITALMTTV 71

Query: 200 KNDISSHISQGKLGEI-----IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +   + +              +   KI I+G  N GKS+L N +   +  I  D PGTT
Sbjct: 72  LSTRQNVLENEDNSSWEEFLSDKQSIKIAIIGRPNVGKSTLVNRILGYERVITFDQPGTT 131

Query: 255 RDVLTI 260
           RD + I
Sbjct: 132 RDSIFI 137


>gi|159040727|ref|YP_001539979.1| GTP-binding protein HSR1-related [Caldivirga maquilingensis IC-167]
 gi|157919562|gb|ABW00989.1| GTP-binding protein HSR1-related [Caldivirga maquilingensis IC-167]
          Length = 409

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 84/235 (35%), Gaps = 30/235 (12%)

Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            +  +    N I S      +    +   ++ + G++ AGK++LFN L  +   I     
Sbjct: 159 QIASVKRRLNAIKSMRDTHIIKRKDKGIPEVALTGYTMAGKTTLFNRLTGEGKYI-DGKA 217

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
             T    +  ++  G    I+DT G  +    V  E    T  E+  ADLILL+ + +  
Sbjct: 218 FATLSTYSRLVNFNGKYAVITDTVGFIDDLPPVLVESFYSTIREIAYADLILLIIDSSDS 277

Query: 312 KE---------ISFPKNI-----DFIFIGTKSDLYS----------TYTEEYDHLISSFT 347
            E         IS   +I       I +  K D              +       IS+  
Sbjct: 278 AEEVRRKVSSSISILNDIAVPMSKVIPVFNKIDEVKDTDSLLNVALEFKLSNPLFISAKA 337

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           G GLE L ++I S L +       ++      L  ++Q +R+         D  L
Sbjct: 338 GIGLESLKSRIASELRDY-----TTVRLAVGDLDTVNQLLRHRASIMFINNDSAL 387


>gi|331268972|ref|YP_004395464.1| ferrous iron transport protein B [Clostridium botulinum BKT015925]
 gi|329125522|gb|AEB75467.1| ferrous iron transport protein B [Clostridium botulinum BKT015925]
          Length = 591

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 23/160 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GK++LFNAL   +   V +  G T +     L+     +KI D  GI  
Sbjct: 2   LTVALVGNPNVGKTTLFNALTGSNQ-YVGNWAGVTVERKEGYLN---KCIKIVDLPGIYA 57

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSD--- 330
            D    +E + + FL   +AD+I+ + + ++     +        N   + +    D   
Sbjct: 58  MDTYSNEEKVSKNFLLTGDADVIVNIVDASNLDRNLYLTTQLRQFNKPIVIVLNMIDVAE 117

Query: 331 ----------LYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                     L +         +S+  G+GL +L   + +
Sbjct: 118 SKGININVDKLKNELGVTAIFPMSASKGQGLNDLKESLLN 157


>gi|88604166|ref|YP_504344.1| GTP-binding protein, HSR1-like protein [Methanospirillum hungatei
           JF-1]
 gi|88189628|gb|ABD42625.1| GTP-binding protein, HSR1-related protein [Methanospirillum
           hungatei JF-1]
          Length = 324

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 79/181 (43%), Gaps = 20/181 (11%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             + D L   ND+ + + +    E   + + IV+ G  N GKSS    ++  +   V   
Sbjct: 131 HQIEDDLLFLNDVRNVLRKLPTVE---DVFTIVVAGFPNVGKSSFIRRVSSAE-PEVASY 186

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN-ADLILLLKEIN 309
           P TT+ ++          V++ DT G+ +   I      ++    + N AD +L + + +
Sbjct: 187 PFTTKGIIVGHYYHRHEKVQLIDTPGVLDRPGIERNAIERQALSAIVNIADALLFILDPS 246

Query: 310 S------------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357
           +             +E+     +  + +  K+DL S    EY   +S+ +GEG++E+++ 
Sbjct: 247 AHCGYPLEEQLRLLEEVKGLVQVPIVVVANKADLTS--IPEYP-SMSTGSGEGVQEILDA 303

Query: 358 I 358
           +
Sbjct: 304 L 304


>gi|39998358|ref|NP_954309.1| ferrous iron transport protein B [Geobacter sulfurreducens PCA]
 gi|39985304|gb|AAR36659.1| ferrous iron transport protein B [Geobacter sulfurreducens PCA]
          Length = 747

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 1/98 (1%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           + +    + + G+ N+GKS+L NA+A      V +  G T +      + +G  +++ D 
Sbjct: 27  VTKRAITVAVAGNPNSGKSTLINAIAGT-RLQVGNWAGVTVEKKEASFEFQGRKIRLVDL 85

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
            G        ++E I R +L  E  DLI+ + +  + +
Sbjct: 86  PGTYSLSPYTQEEIIARDYLVHERPDLIINVVDATNLE 123


>gi|324993989|gb|EGC25908.1| GTP-binding protein HflX [Streptococcus sanguinis SK405]
 gi|325695996|gb|EGD37887.1| GTP-binding protein HflX [Streptococcus sanguinis SK160]
 gi|327474854|gb|EGF20259.1| GTP-binding protein HflX [Streptococcus sanguinis SK408]
 gi|327489979|gb|EGF21768.1| GTP-binding protein HflX [Streptococcus sanguinis SK1058]
          Length = 412

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 89/235 (37%), Gaps = 25/235 (10%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  KD     ++   T D 
Sbjct: 177 RQLKAVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNCLTSKDQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  ++L G L V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKSINLSGQLNVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPHHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKI 358
            K            +I  + +  K+D    +T     + + S   +    L+ ++
Sbjct: 296 EKTVLDIMKELDMLDIPRLTLYNKADKAEDFTPTLTPYSLISAKADNSRALLQQV 350


>gi|228941465|ref|ZP_04104016.1| GTP-binding protein era [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228960565|ref|ZP_04122214.1| GTP-binding protein era [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228974396|ref|ZP_04134965.1| GTP-binding protein era [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980989|ref|ZP_04141292.1| GTP-binding protein era [Bacillus thuringiensis Bt407]
 gi|229048019|ref|ZP_04193595.1| GTP-binding protein era [Bacillus cereus AH676]
 gi|229111773|ref|ZP_04241321.1| GTP-binding protein era [Bacillus cereus Rock1-15]
 gi|229129577|ref|ZP_04258547.1| GTP-binding protein era [Bacillus cereus BDRD-Cer4]
 gi|229146885|ref|ZP_04275250.1| GTP-binding protein era [Bacillus cereus BDRD-ST24]
 gi|229152500|ref|ZP_04280692.1| GTP-binding protein era [Bacillus cereus m1550]
 gi|228631108|gb|EEK87745.1| GTP-binding protein era [Bacillus cereus m1550]
 gi|228636713|gb|EEK93178.1| GTP-binding protein era [Bacillus cereus BDRD-ST24]
 gi|228653894|gb|EEL09762.1| GTP-binding protein era [Bacillus cereus BDRD-Cer4]
 gi|228671767|gb|EEL27063.1| GTP-binding protein era [Bacillus cereus Rock1-15]
 gi|228723476|gb|EEL74845.1| GTP-binding protein era [Bacillus cereus AH676]
 gi|228778780|gb|EEM27044.1| GTP-binding protein era [Bacillus thuringiensis Bt407]
 gi|228785446|gb|EEM33456.1| GTP-binding protein era [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228799165|gb|EEM46133.1| GTP-binding protein era [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228818246|gb|EEM64320.1| GTP-binding protein era [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 266

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +D P TTR+ +          V   DT GI +    +    +K     ++  D++L +  
Sbjct: 2   SDKPQTTRNKIQGVYTENDAQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVN 61

Query: 308 I----NSKKEISFPK----NIDFIFIGTKSD---------LYSTYTEEYDH----LISSF 346
                   +E    K          +  K D         L   Y + ++      IS+ 
Sbjct: 62  AVEGFGRGEEFIIEKLKETKQPVFLVINKIDQLHPEQLLELIDQYRKLHEFAEIVPISAL 121

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            G  ++ LI  IK  L    +  P +  +     + +++ +R
Sbjct: 122 DGNNVDALIGTIKKYLPEGPQYYPENQVTDHPERFIIAELIR 163


>gi|297538136|ref|YP_003673905.1| GTP-binding proten HflX [Methylotenera sp. 301]
 gi|297257483|gb|ADI29328.1| GTP-binding proten HflX [Methylotenera sp. 301]
          Length = 375

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 84/238 (35%), Gaps = 28/238 (11%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W       R      +     E       + +   +  L+  +   
Sbjct: 126 LAQLEHLSTRLVRGWTHL---ERQKGGIGVRGGPGETQLELDRRMLRVRVKQLREKLIKL 182

Query: 207 ISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
            +Q  +    R   N   + ++G++NAGKS++FN L K D+  V D    T D  T  + 
Sbjct: 183 KAQRGMQRRARKRSNVMTVSLVGYTNAGKSTVFNRLTKADI-YVADQLFATLDTTTHKIY 241

Query: 264 LEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE---INSKKEISF--- 316
           +     V +SDT G  +       E    T  E   ADL+L + +    N  ++I+    
Sbjct: 242 IADAGSVVLSDTVGFIKHLPHALVEAFGATLEEAAQADLLLHIVDTASTNRDEQIAQVNK 301

Query: 317 ------PKNIDFIFIGTKSDLY--------STYTEEYDHLISSFTGEGLEELINKIKS 360
                   N+  I +  + D            Y        S+ TGEG++ L   +  
Sbjct: 302 VLLEIGAANVPQILVHNQIDRVGLPPSVSRDEYGRITTIHASASTGEGMDLLRQAMAE 359


>gi|221638222|ref|YP_002524484.1| Ferrous iron transport protein B [Rhodobacter sphaeroides KD131]
 gi|221159003|gb|ACL99982.1| Ferrous iron transport protein B [Rhodobacter sphaeroides KD131]
          Length = 770

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 78/212 (36%), Gaps = 27/212 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           +G  I +LG+ N GK++LFNAL      +V + PG T +  T ++   G    + D  G 
Sbjct: 2   SGATIALLGNPNCGKTTLFNALTGT-RQMVGNWPGVTVEKKTGEIRFAGRTAALVDLPGT 60

Query: 277 --IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTK 328
             +     +   E I R F     A L++ + + ++ +             +  +     
Sbjct: 61  YSLGSGHTVSTDERIARDFALSGEAQLVVNIVDASNIERNLYLTLQILEMGVPVVVALNM 120

Query: 329 SDLYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPS 375
            D+ ++   E D              I + TG G+EEL   +   L      + P S   
Sbjct: 121 MDIAASQRIEIDLEALAARLGCPVVPIVAATGRGIEELKAALVQALDTGVPAVKPLSYVP 180

Query: 376 HKRHLYHLSQTVRYLEMASLNEKD--CGLDII 405
                  ++  V  +E A          L+++
Sbjct: 181 EIEA--AVADLVPAIEAAGETRAPRWLALELL 210


>gi|327271876|ref|XP_003220713.1| PREDICTED: GTP-binding protein 5-like [Anolis carolinensis]
          Length = 504

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 70/179 (39%), Gaps = 26/179 (14%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           ++      ++G  NAGKSSL  A++    A V   P TT +     +  EGY  V ++D 
Sbjct: 319 LKTMAHAGMVGFPNAGKSSLLRAISNAKPA-VASYPFTTLNPHVGIVHYEGYEQVSVADV 377

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN--------------I 320
            GI +        G+      +E    +L + +++  +  +  ++               
Sbjct: 378 PGIIKGAHQNRGLGLA-FLKHIERCRFLLYVLDLSVPEPWTQLRDLKYELEQYEEGLSKR 436

Query: 321 DFIFIGTKSDLYSTYT---------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
               IG K DL    +         E+    +S+ TG+ LEEL+  +K +  +  K   
Sbjct: 437 PHAIIGNKLDLPQAKSNLPLLKEQVEQRVIPLSALTGDNLEELLLHLKDLYDHYVKTEE 495


>gi|255522526|ref|ZP_05389763.1| GTP-binding protein [Listeria monocytogenes FSL J1-175]
          Length = 307

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 81/213 (38%), Gaps = 22/213 (10%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++++    +++       L          L+ +   I +      + ++     +E +
Sbjct: 11  MRAKSKEGKLQVAYAQYK-YLLPRLSGQGVSLSKLGGGIGSRGPGESKLEMDKRHIREKM 69

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK----DVAIVTD 249
           +DI      +  H  +      I++ ++  ++G++NAGKS++FN L  +    +  +   
Sbjct: 70  HDIKAQLTHVEQHRKRIIERRNIQSVFRFGLIGYTNAGKSTIFNRLTNETTLQEDKLFAT 129

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           +  TTR +        G+   ++DT G  +          + T  E  N D+++ + + +
Sbjct: 130 LDPTTRKIRF----SGGFQALLTDTVGFIQDLPTTLIAAFRSTLEETANVDVLIHVVDAS 185

Query: 310 SKKEISFP------------KNIDFIFIGTKSD 330
           +   +                ++  + I  K D
Sbjct: 186 NPDYLQHETTVISLLEELEMNHLPTLVIYNKMD 218


>gi|229163245|ref|ZP_04291200.1| GTP-binding protein era [Bacillus cereus R309803]
 gi|228620308|gb|EEK77179.1| GTP-binding protein era [Bacillus cereus R309803]
          Length = 266

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +D P TTR+ +          V   DT GI +    +    +K     ++  D++L +  
Sbjct: 2   SDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVN 61

Query: 308 I----NSKKEISFPK----NIDFIFIGTKSD---------LYSTYTEEYDH----LISSF 346
                   +E    K          +  K D         L   Y + ++      IS+ 
Sbjct: 62  AVEGFGRGEEFIIEKLKETKQPVFLVINKIDQLHPEQLLELIDQYRKLHEFAEIVPISAL 121

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            G  ++ LI  IK  L    +  P +  +     + +++ +R
Sbjct: 122 DGNNVDALIGTIKKYLPEGPQYYPDNQVTDHPERFIIAELIR 163


>gi|238793772|ref|ZP_04637393.1| GTP-binding protein era [Yersinia intermedia ATCC 29909]
 gi|238726836|gb|EEQ18369.1| GTP-binding protein era [Yersinia intermedia ATCC 29909]
          Length = 284

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGI 289
           GKS+L N L  + V+I +  P TTR  +        Y     DT G+  E    + +   
Sbjct: 2   GKSTLLNELLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEEKRAINRLMN 61

Query: 290 KRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL 342
           +     + + +L++ + E     +  E+   K        +    K D  +  T+   H+
Sbjct: 62  RAASSSLGDVELVIFVVEGTNWTADDEMVVNKLRSLQCPVLLAINKVDNVTDKTKLLPHI 121

Query: 343 I--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
                          S+  G  ++ + + ++ ++       P    + +   +  S+ +R
Sbjct: 122 QFLSKQMNFLDVVPISAEKGMNVDTIASIVRKLMPEAGHHFPEDYITDRSQRFMASEIIR 181

Query: 389 YLEMASLNEK 398
              M  L E+
Sbjct: 182 EKLMRFLGEE 191


>gi|282852880|ref|ZP_06262221.1| GTP-binding protein HflX [Lactobacillus gasseri 224-1]
 gi|282555988|gb|EFB61609.1| GTP-binding protein HflX [Lactobacillus gasseri 224-1]
          Length = 426

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 85/215 (39%), Gaps = 26/215 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAK- 241
             + + +   I  +K ++     Q ++    RN     ++ ++G++NAGKS+  N L   
Sbjct: 167 ELNRRTIGKQISAIKKELKDISKQEEIKSARRNNSRLPQVALVGYTNAGKSTTMNELLNV 226

Query: 242 ------KDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
                 K      ++   T D     +DL +     +SDT G          E  K T  
Sbjct: 227 FSDEANKKQVFEKNMLFATLDTSVRRIDLKDDLSFILSDTVGFISKLPHNLVESFKATLQ 286

Query: 295 EVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY---TEEY 339
           E ++ADL++ + + +    +   K            ++  I    K+DL        E  
Sbjct: 287 EAKDADLLINVVDASDHNMVQMIKTTQKVLNELNITDVPMITAYNKADLTERNYPQIEGN 346

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D L S+   E +++L N I   + + ++K+   +P
Sbjct: 347 DILYSAKDPESIKQLANLIVKRVFDNYEKINLVLP 381


>gi|259907179|ref|YP_002647535.1| putative GTPase HflX [Erwinia pyrifoliae Ep1/96]
 gi|224962801|emb|CAX54258.1| GTP-binding protein HflX [Erwinia pyrifoliae Ep1/96]
 gi|283476987|emb|CAY72879.1| GTP-binding protein hflX [Erwinia pyrifoliae DSM 12163]
 gi|310765330|gb|ADP10280.1| putative GTPase HflX [Erwinia sp. Ejp617]
          Length = 426

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 104/293 (35%), Gaps = 32/293 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIT 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +S    QG+      +   + ++G++NAGKS+LFN L   +V    D    T
Sbjct: 173 LILSRLERVSKQREQGRQARNKADVPTVSLVGYTNAGKSTLFNRLTSAEV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     +D+     V ++DT G             K T  E   A L+L + +     +
Sbjct: 232 LDPTLRRVDVADVGEVVLADTVGFIRHLPHDLVAAFKATLQETREAALLLHIVDA---AD 288

Query: 314 ISFPKNIDFI---------------FIGTKSDLYSTYTEEYD---------HLISSFTGE 349
           +   +NID +                +  K D+   +    D           +S+ TGE
Sbjct: 289 LRIEENIDAVNVVLEEIESAEIPSLLVMNKIDMLDGFVPRIDRDEENLPVRVWLSAQTGE 348

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
           G+  L   +   L+ +  +    +P     L      +R ++    NE+D  L
Sbjct: 349 GIPLLFQALTERLAGEIAQFELRLPPAAGRLRSRFYQLRAIDK-EWNEEDGSL 400


>gi|118595142|ref|ZP_01552489.1| ferrous iron transport protein B [Methylophilales bacterium
           HTCC2181]
 gi|118440920|gb|EAV47547.1| ferrous iron transport protein B [Methylophilales bacterium
           HTCC2181]
          Length = 581

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 19/158 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           KI +LG  N GKS+LFN ++    A V + PG T D+ ++   L G L ++ D  GI + 
Sbjct: 3   KIALLGMPNTGKSTLFNQISGSS-AKVGNWPGITVDLYSVKTLLNGQLTELIDLPGIYDL 61

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFPKN-----IDFIFIGTKSD---- 330
               E E +  TFL+    D +L +       +++S   +     I  + I    D    
Sbjct: 62  KGYSEDEKVVHTFLDKNKIDQVLFVINSTQIDRQLSLALDIIKLGIPVLIIANMMDEAKK 121

Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                   L    T      IS+    GL++L  KI +
Sbjct: 122 FGLTFDFGLLEKLTGCPVVPISAKYKTGLDQLNQKILA 159


>gi|238853144|ref|ZP_04643533.1| GTP-binding protein HflX [Lactobacillus gasseri 202-4]
 gi|238834252|gb|EEQ26500.1| GTP-binding protein HflX [Lactobacillus gasseri 202-4]
          Length = 426

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 85/215 (39%), Gaps = 26/215 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAK- 241
             + + +   I  +K ++     Q ++    RN     ++ ++G++NAGKS+  N L   
Sbjct: 167 ELNRRTIGKQISAIKKELKDISKQEEIKSARRNNSRLPQVALVGYTNAGKSTTMNELLNV 226

Query: 242 ----KDVAIVTDIP--GTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
                +   V +      T D     +DL +     +SDT G          E  K T  
Sbjct: 227 FSDEANKKQVFEKNMLFATLDTSVRRIDLKDDLSFILSDTVGFISKLPHNLVESFKATLQ 286

Query: 295 EVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY---TEEY 339
           E ++ADL++ + + +    +   K            ++  I    K+DL        E  
Sbjct: 287 EAKDADLLINVVDASDHNMVQMIKTTQKVLNELNITDVPMITAYNKADLTERNYPQIEGN 346

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D L S+   E +++L N I   + + ++K+   +P
Sbjct: 347 DILYSAKDPESIKQLANLIVKKVFDNYEKINLVLP 381


>gi|218259573|ref|ZP_03475273.1| hypothetical protein PRABACTJOHN_00932 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225018|gb|EEC97668.1| hypothetical protein PRABACTJOHN_00932 [Parabacteroides johnsonii
           DSM 18315]
          Length = 826

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 19/164 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GK+SLFN  +      V +  G T D         GY  KI D  G   
Sbjct: 112 INVALVGNPNCGKTSLFNFASGAHE-HVGNYSGVTVDAKAGTFHQNGYTFKIVDLPGTYS 170

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----NIDFIFI--GTKSDLYS 333
                 +E   R  L  E  D+++ + + ++ +   +      ++D   +      D   
Sbjct: 171 LSAYTPEELYVRKHLNEEQPDIVINVVDASNLERNLYLTCQLIDMDVRMVIALNMYDELE 230

Query: 334 TYTEEYDHL------------ISSFTGEGLEELINKIKSILSNK 365
            +  ++DH               S TG G+EEL N++  +   +
Sbjct: 231 RHGNKFDHNSLSRMIGTPIVPTISKTGFGIEELFNRVIKVYEEE 274


>gi|170021421|ref|YP_001726375.1| GTP-binding protein HSR1-related [Escherichia coli ATCC 8739]
 gi|169756349|gb|ACA79048.1| GTP-binding protein HSR1-related [Escherichia coli ATCC 8739]
          Length = 291

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 14/188 (7%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
             L + +   I + ++  +      I I+G S AGKSSL N L + +V+ V+D+   TR+
Sbjct: 15  ASLPDTLRQLILE-RIQNLTHYEPVIGIMGKSGAGKSSLCNELFRGEVSPVSDVNACTRE 73

Query: 257 VLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
           VL   L    + + I D  G+ E      E   + R    +   DL+L + + + +    
Sbjct: 74  VLRFRLRSGRHSLVIVDLPGVGENGQRDHEYRALYR--RMLPELDLVLWVIKSDDRALSV 131

Query: 312 -----KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366
                + +  P     +F+  ++D     + E+D    + + +  + L  K  +I +   
Sbjct: 132 DEQFWRGVMQPYQQQVVFVINQADKIEP-SHEWDTRSGTPSAQQQKNLQEKQVAITTMFK 190

Query: 367 KKLPFSIP 374
              P  + 
Sbjct: 191 PHHPVCVV 198


>gi|110597310|ref|ZP_01385598.1| ferrous iron transport protein B:Small GTP-binding protein domain
           [Chlorobium ferrooxidans DSM 13031]
 gi|110341146|gb|EAT59614.1| ferrous iron transport protein B:Small GTP-binding protein domain
           [Chlorobium ferrooxidans DSM 13031]
          Length = 712

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 19/160 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ N GKSSLFNAL       V +  G T +     +D +GY + + D  G   
Sbjct: 7   ITIALAGNPNCGKSSLFNALTGAQQK-VGNFSGVTVEKHEGYIDYKGYRITVVDLPGTYS 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                 +E + R +L  E  D+++ + E  + +             +DF+      D   
Sbjct: 66  LTPYSPEELVTRAYLVRERPDVVVNVLEGPNLERNLLLTTQLMELEVDFLVALNMMDEVE 125

Query: 334 TYTEEYDHLI------------SSFTGEGLEELINKIKSI 361
                 D               S+    GL+ L++ I  +
Sbjct: 126 EKGIVIDIKQLQQLLGCHIIPVSAKKKSGLDALLDHIIRV 165


>gi|147860032|emb|CAN83131.1| hypothetical protein VITISV_029539 [Vitis vinifera]
          Length = 928

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 96/284 (33%), Gaps = 67/284 (23%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  +    + I+G  NAGKSSL N +    VA V+    TT   +   +      +   D
Sbjct: 600 EEDQRSLSVGIIGAPNAGKSSLTNHVVGTKVAAVSRKTNTTTHEVLGVMTKGNTQICFFD 659

Query: 274 TAGIRET----DDIVEKEGIKRTFLEVENADLILLLKEIN--------------SKKEIS 315
           T G+            +  ++  +  V   D+++++ +++               +    
Sbjct: 660 TPGLMLKSSGYPYSDMRARVESAWSSVGLYDVLIVIFDVHRHLSRPDSRVVRLIERMGAQ 719

Query: 316 FPKNIDFIFIGTKSDLYSTYTE--------------EYDHLISSFTGEGLEELINKI-KS 360
                  +    K DL     +              E   +IS   G G+++L   + + 
Sbjct: 720 AHPKQKRVLCMNKVDLVEKKKDLLKVADEFKDLPGYERYFMISGLKGSGVKDLTQFLMEQ 779

Query: 361 ILSNKFKKLPFSI-----------PSHKRHLYHLSQTV------RYLEMASLNEKDCGLD 403
                + + PF++              +R L H+ Q +      R ++   L +    ++
Sbjct: 780 AFKRPWDEDPFTMSEEVMKNISLEVVRERLLDHVHQEIPYGIDHRLIDWKELRDGSLRIE 839

Query: 404 IIAENL---RLASV---------SLGKITGCVDVEQLLDIIFSK 435
              ++L   + +            +G+I G    E+ L  IF +
Sbjct: 840 ---QHLITPKQSQRKILVGKKGSKIGRI-GIEANEE-LRSIFKR 878


>gi|158339797|ref|YP_001520804.1| ferrous iron transport protein B [Acaryochloris marina MBIC11017]
 gi|158310038|gb|ABW31654.1| ferrous iron transport protein B [Acaryochloris marina MBIC11017]
          Length = 787

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 23/165 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           I ++G+ N GK++LFN L   +     + PG T D  T      G    + D  G+    
Sbjct: 6   IALIGNPNCGKTTLFNDLTGTNQ-RTGNWPGVTVDQKTGHYHYNGTKTTVVDLPGVYSLD 64

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL 331
            E D     E I R +L    ADLIL + + ++ +             +  +      D+
Sbjct: 65  GEDDSTGLDEVIARDYLLSTEADLILNIVDASNLERNLYLTTQIMEMGLPMVVALNMMDI 124

Query: 332 YSTYTEEYDHL------------ISSFTGEGLEELINKIKSILSN 364
              +  + D              +S+F GEG+ E+ + I S + +
Sbjct: 125 AQDHDLDIDAQVLSHRIGCPVSSMSAFLGEGIHEIKDIINSYVDD 169


>gi|78355423|ref|YP_386872.1| GTP-binding protein HflX [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217828|gb|ABB37177.1| GTP-binding protein HflX [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 490

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 24/201 (11%)

Query: 188 SSKEVLNDILFLKNDISSHISQ--GKLGEIIRNGYKI-VILGHSNAGKSSLFNALAKKDV 244
             ++V   I  +K D+ +  +Q     G   +    +  ++G++NAGKS+L N L   DV
Sbjct: 288 DRRKVRERIARIKQDLKALRTQRGFTRGRRAKARVPVASLVGYTNAGKSTLLNTLTNADV 347

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +  D    T D  T  L       + ++DT G   +     KE  + T  E+E ADL+L
Sbjct: 348 -LAEDKLFATLDTTTRRLRFPQERELIVTDTVGFIRSLPKELKEAFRATLEELEAADLLL 406

Query: 304 LLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLIS 344
            + +    +            +    ++I  + +  K +     T             +S
Sbjct: 407 HVADAGHPELEMQLRAVEEILDELELQDIPRLLVLNKWETLDDETRLALAALYPAAIRVS 466

Query: 345 SFTGEGLEELINKIKSILSNK 365
           + T  GL++L  +I   +  +
Sbjct: 467 ARTRLGLDDLTAEIIRRIDWE 487


>gi|126461239|ref|YP_001042353.1| ferrous iron transport protein B [Rhodobacter sphaeroides ATCC
           17029]
 gi|126102903|gb|ABN75581.1| ferrous iron transport protein B [Rhodobacter sphaeroides ATCC
           17029]
          Length = 770

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 78/212 (36%), Gaps = 27/212 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           +G  I +LG+ N GK++LFNAL      +V + PG T +  T ++   G    + D  G 
Sbjct: 2   SGATIALLGNPNCGKTTLFNALTGT-RQMVGNWPGVTVEKKTGEIRFAGRTAALVDLPGT 60

Query: 277 --IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTK 328
             +     +   E I R F     A L++ + + ++ +             +  +     
Sbjct: 61  YSLGSGHTVSTDERIARDFALSGEAQLVVNIVDASNIERNLYLTLQILEMGVPVVVALNM 120

Query: 329 SDLYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPS 375
            D+ ++   E D              I + TG G+EEL   +   L      + P S   
Sbjct: 121 MDIAASQRIEIDLETLAARLGCPVVPIVAATGRGIEELKAALVQALDTGVPAVKPLSYVP 180

Query: 376 HKRHLYHLSQTVRYLEMASLNEKD--CGLDII 405
                  ++  V  +E A          L+++
Sbjct: 181 EIEA--AVADLVPAIEAAGETRAPRWLALELL 210


>gi|261838239|gb|ACX98005.1| GTP-binding protein [Helicobacter pylori 51]
          Length = 301

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 72/190 (37%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  N GKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNTGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQQYASQFLALVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR 388
                 + +R
Sbjct: 188 MRDIYKEIIR 197


>gi|188527646|ref|YP_001910333.1| GTP-binding protein Era [Helicobacter pylori Shi470]
 gi|226741219|sp|B2UTX1|ERA_HELPS RecName: Full=GTPase Era
 gi|188143886|gb|ACD48303.1| GTP-binding protein Era [Helicobacter pylori Shi470]
          Length = 301

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 28/217 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSD-- 330
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127

Query: 331 LYSTYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           ++    ++                 S+   + L  L+  I   LS         + S ++
Sbjct: 128 VHKQVLQKLQEYQQYASQFLALVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAENLR 410
                 + +R     +L      E D  +D   E  R
Sbjct: 188 MCDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEER 224


>gi|270265000|ref|ZP_06193263.1| hypothetical protein SOD_k00360 [Serratia odorifera 4Rx13]
 gi|270040934|gb|EFA14035.1| hypothetical protein SOD_k00360 [Serratia odorifera 4Rx13]
          Length = 426

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 97/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ ++
Sbjct: 114 RARTHEGKLQVELAQLRHIATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDRIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     ++    QG+      +   + ++G++NAGKS+LFN +   DV    D    T
Sbjct: 173 LILRRLERVAKQREQGRRARTRADVPTVSLVGYTNAGKSTLFNRITSADV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     +D+       ++DT G             K T  E   A L+L + +    + 
Sbjct: 232 LDPTLRRIDVADVGDTVLADTVGFIRHLPHDLVAAFKATLQETRQASLLLHVIDAADTRV 291

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
               +             I  + +  K D+   +    D           +S+ +GEG+ 
Sbjct: 292 DENIEAVNTVLAEIESDEIPTLLVMNKIDMLDDFVPRIDRNDENLPIRVWLSAASGEGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            L   +   LS +  +    +P      R  ++  Q + 
Sbjct: 352 LLYQALTERLSGEIAQYELRLPPQAGRLRSRFYQLQAIE 390


>gi|297719757|ref|NP_001172240.1| Os01g0225200 [Oryza sativa Japonica Group]
 gi|255673015|dbj|BAH90970.1| Os01g0225200 [Oryza sativa Japonica Group]
          Length = 217

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPG--TTRDVLTIDLDLEGYLVKISDTAGIR- 278
           ++++G  N GKS+LFN   ++  A+V + PG   TRD+      L     ++ D+AG+  
Sbjct: 96  VILVGRPNVGKSALFNRFIRRREALVYNTPGDHVTRDIREGVAKLGDLRFRVLDSAGLET 155

Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T   +       T   +  +   + L ++ +
Sbjct: 156 AATSGSILARTADMTGNVLARSQFAIFLIDVRA 188


>gi|296109074|ref|YP_003616023.1| small GTP-binding protein [Methanocaldococcus infernus ME]
 gi|295433888|gb|ADG13059.1| small GTP-binding protein [Methanocaldococcus infernus ME]
          Length = 185

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 34/173 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL----------DLEGYLV 269
           +KI I+G  NAGKSS+ NAL  K +++V+++ GTT+  +              +     +
Sbjct: 3   FKIAIIGPENAGKSSIMNALFGKYISLVSEVGGTTKMPVKRYWGKIKVSRLKENPIFAEI 62

Query: 270 KISDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------- 318
             SD +G+      + ++ K+ ++ T+ E+E++D+I+ + +       +F K        
Sbjct: 63  MFSDLSGLYRGNNKEAVLSKKVLEETYKEIESSDMIINVVDATQGLIRNFEKLHHLLKFR 122

Query: 319 -NIDFIFIGTKSDLYSTYTEEY------------DHLISSFTGEGLEELINKI 358
                I +  K DL +    E                +S+ TG+ ++ LI  I
Sbjct: 123 YQKPIIVVVNKYDLINDTVAENLRNRIRERLKAEPIFVSAKTGDNIDVLIETI 175


>gi|291279972|ref|YP_003496807.1| small GTP-binding protein [Deferribacter desulfuricans SSM1]
 gi|290754674|dbj|BAI81051.1| small GTP-binding protein [Deferribacter desulfuricans SSM1]
          Length = 576

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 21/230 (9%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
           D L+ +   I        + ++     K+ +  +      IS      +   + R    +
Sbjct: 348 DSLSRLTGGIGGRGPGETKLEIDRRRIKDRIAFLNRKLKQISKVRYTQRKRRLQREIPTV 407

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETD 281
            I+G++NAGK++L N+L    +    ++   T D  +  L   E   + I+DT G     
Sbjct: 408 SIVGYTNAGKTTLINSLTNSSI-YADNLMFATLDTSSKRLRFPEEKEIIITDTVGFIRDL 466

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTKS 329
               K+  K T  E+ +ADL L + +I++ +            E     +++ I +  K 
Sbjct: 467 PEDLKDAFKSTLDELYDADLFLHVVDISNPEFRKQIESVNKILEELNLIDVEQILVFNKI 526

Query: 330 DLYS-----TYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
           DL           E+     IS+   +   EL+N+I  IL  +  K   S
Sbjct: 527 DLLDEESLKELKNEFPKAIFISAINRKTFNELLNRIFYILFRQKVKNGSS 576


>gi|254491993|ref|ZP_05105171.1| GTP-binding proten HflX [Methylophaga thiooxidans DMS010]
 gi|224462808|gb|EEF79079.1| GTP-binding proten HflX [Methylophaga thiooxydans DMS010]
          Length = 380

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 70/200 (35%), Gaps = 26/200 (13%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             I  LK  +    SQ + G   R       + ++G++N GKS+LFN +   +V    D 
Sbjct: 178 QRIKTLKKKLDKVRSQREQGRRSRQRGGVPVVSLVGYTNMGKSTLFNKVTSAEV-YADDR 236

Query: 251 PGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D     + L     + ++DT G          E    T  E  +A L+L + +  
Sbjct: 237 LFATLDPTLRRVKLHDTEMLILADTVGFIRDLPHDLVESFSSTLEETRDAALLLHVVDCA 296

Query: 310 SKKEISFPKNIDFIF------------IGTKSDLYSTYTEEYD---------HLISSFTG 348
           S        +++ +             I  K D         +           +S+ +G
Sbjct: 297 SGDREELIHHVNDVLKQIEAHELPQLIIYNKIDNVDGMKPRIERNADGNIHRIWLSAKSG 356

Query: 349 EGLEELINKIKSILSNKFKK 368
           EGLE L   ++     + + 
Sbjct: 357 EGLELLRQALQEYFPQQDQS 376


>gi|118592245|ref|ZP_01549638.1| Fe2+ transport system protein B [Stappia aggregata IAM 12614]
 gi|118435217|gb|EAV41865.1| Fe2+ transport system protein B [Stappia aggregata IAM 12614]
          Length = 789

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 94/231 (40%), Gaps = 34/231 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y++ +LG +N+GKS+LFN L      I  + PG T D  +    ++G  V+  D  G+  
Sbjct: 24  YRVFLLGPANSGKSTLFNMLTGARQTI-GNWPGVTVDRKSGTAVIKGLTVEFVDLPGVSS 82

Query: 280 TDDIVEKEGIKR-TFLEVENA--DLILLLKEINSKKE------ISFPKNIDFIFIGTKSD 330
                 +   +R     + N   D +++  ++++          +    +  I + TK+D
Sbjct: 83  LSAPQAERIDERVARDALVNVPHDALIVAVDLSAPHRGLSMLLQALGNGVPVIAVLTKAD 142

Query: 331 LYST---------YTEEYDHLISSFTG---EGLEELINKIKSILSNKF-------KKLPF 371
            +++          TE+ +  + + +G    GL++L +++   L +           LP 
Sbjct: 143 CWTSAAVDTAARILTEQLNVPVVAVSGRTLSGLDQLHDQLARCLQDGERGVSPPRTSLPG 202

Query: 372 SIPSHKRHLYHLSQTVRYLEMA---SLNEKDCGLDIIAENLRLASVSLGKI 419
           ++    R L  +       E A   + + +    D + E  + A   L +I
Sbjct: 203 NVSDALRVLQQVLAGRPEYENANTVAASRRLMERDWLTE--KRARQDLLEI 251


>gi|113954844|ref|YP_729899.1| ferrous iron transporter B [Synechococcus sp. CC9311]
 gi|113882195|gb|ABI47153.1| ferrous iron transport protein B [Synechococcus sp. CC9311]
          Length = 613

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 7/116 (6%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           +IV +G  N GKS+ FN + K + A V + PG T D +  +LD  G   +  D  GI + 
Sbjct: 18  RIVFIGQPNTGKSTFFNTVTKSN-AGVANWPGLTVDFMQANLDYNGKTYEFVDLPGIYDL 76

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFP-----KNIDFIFIGTKSD 330
           +   E E + + FLE  N DLI+ +   +   ++I  P       +  + +   +D
Sbjct: 77  EGFTEDELVVQKFLENYNFDLIVCVINASQIDRQILMPLQVQRLGLPCVLMLNMAD 132


>gi|294141778|ref|YP_003557756.1| ferrous iron transport protein B [Shewanella violacea DSS12]
 gi|293328247|dbj|BAJ02978.1| ferrous iron transport protein B [Shewanella violacea DSS12]
          Length = 763

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 13/139 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
           +  V +G+ NAGKS+LFNAL   +   V +  G T +  T    LEG  V ++D  GI  
Sbjct: 5   FHCVTVGNPNAGKSTLFNALTGANQQ-VGNWSGVTVEKKTGLFTLEGTDVSLTDLPGIYD 63

Query: 278 ----RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPK-NIDFIFIGT 327
                ++ D    E I + FL  +  D I+ L +  + +      I   +  I  + +  
Sbjct: 64  LLPAGKSCDCSLDEQIAQQFLAEQQIDGIINLVDATNIERHLYLTIQLRELGIPMVVVLN 123

Query: 328 KSDLYSTYTEEYDHLISSF 346
           K D    +  E D    S 
Sbjct: 124 KIDAAKRHGIEVDVEQMSK 142


>gi|256751148|ref|ZP_05492030.1| ferrous iron transport protein B [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750054|gb|EEU63076.1| ferrous iron transport protein B [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 656

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 19/168 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++    I + G++N GKS +FN L      I+ + PG T ++    L  +G  +KI D  
Sbjct: 1   MKKEIVIALAGNANVGKSVIFNQLTGLTQ-IIGNWPGKTVEMAEGLLRFKGRTIKIVDLP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKS 329
           GI       ++E + R F+  E  D+++ + + ++ +            ++  +    + 
Sbjct: 60  GIYSLSAYSQEEIVSREFIAFEKPDVVINVVDASNLERNLFFTVQLLELHVPMVMALNQV 119

Query: 330 D------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
           D                          +  G+GLEELI+K   ++ + 
Sbjct: 120 DYALKKGIDINVKRLEELLGIPVVKTIATKGKGLEELIDKALEVVDSH 167


>gi|294634454|ref|ZP_06712990.1| GTP-binding protein HflX [Edwardsiella tarda ATCC 23685]
 gi|291092164|gb|EFE24725.1| GTP-binding protein HflX [Edwardsiella tarda ATCC 23685]
          Length = 426

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ ++
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDRIH 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+   +      + ++G++NAGKS+LFN L    V     +  T 
Sbjct: 173 LILGRLEKVEKQREQGRRARVRAEIPTVSLVGYTNAGKSTLFNTLTTASVYAADQLFATL 232

Query: 255 RDVL-TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
              L  +++D  G  V ++DT G             K T LE   A L+L + + +  + 
Sbjct: 233 DPTLRRVEVDDVGATV-LADTVGFIRHLPHDLVAAFKATLLETRQASLLLHVVDASDARV 291

Query: 314 ISFPK------------NIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                             I  + +  K D+   +    D           +S+  G G++
Sbjct: 292 DENINAVNTVLADIGADGIPVLLVMNKIDMLPDFAPRIDRDEENRPWRVWVSAQQGCGMD 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            +   +   L  +       +P      R  ++  Q + 
Sbjct: 352 LIFQALSERLGGEIASYTLRLPPAAGRLRSRFYQLQAIE 390


>gi|162451438|ref|YP_001613805.1| GTP-binding protein HflX [Sorangium cellulosum 'So ce 56']
 gi|161162020|emb|CAN93325.1| GTP-binding protein HflX [Sorangium cellulosum 'So ce 56']
          Length = 476

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 85/242 (35%), Gaps = 22/242 (9%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219
           +  +                  E       +++ + I  LK ++++   +      +R G
Sbjct: 196 RLRETGGGGDRQRGGIGGKGAGESALELDRRKIRDRIAELKEELAAVQREQSTRRALRQG 255

Query: 220 -YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGI 277
             ++ ++G++NAGKSSL  AL   +V +V D    T D     L  E    + +SDT G 
Sbjct: 256 QRRVALVGYTNAGKSSLMRALTGSEV-LVADKLFATLDTTVRALHPEVRPRILVSDTVGF 314

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN---------IDFIFI 325
            +          + T  E   A L+L + + +    + +++  +          +    +
Sbjct: 315 IKKLPHDLVASFRSTLDEALEASLLLYVADASDPTFRDQLAVTRGVLSEIGASEVPSRLL 374

Query: 326 GTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
             K D  S    +           +S+   + +  L   I +       +    +P  K+
Sbjct: 375 LNKVDRLSEEERDALRLEFPEATQLSAKIPDDVAALREAIIAFFEQSMVEAELLLPYAKQ 434

Query: 379 HL 380
            L
Sbjct: 435 GL 436


>gi|45735814|dbj|BAD12850.1| putative GTP-binding protein ERG [Oryza sativa Japonica Group]
          Length = 437

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 80/224 (35%), Gaps = 44/224 (19%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           G++ E  +    + I+G  NAGKSSL N +    VA V+    TT   +   L      +
Sbjct: 139 GEVREEDQMSLSVGIVGAPNAGKSSLTNTMVGTKVAAVSRKTNTTTHEILGVLTKGITQI 198

Query: 270 KISDTAGIRETDDIVEKE----GIKRTFLEVENADLILLLKEIN--------------SK 311
              DT G+      +        ++  +  +   DL+++L ++N               +
Sbjct: 199 CFFDTPGLMLGHHGLPHRDVTVRVESAWSSINLYDLLIVLFDVNRHLKTPDTRVVKLIKR 258

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTE--------------EYDHLISSFTGEGLEELINK 357
                  N   I    K DL     +              E   ++S   G+G+++L+  
Sbjct: 259 LGAEVNPNQKRILCMNKVDLVEDKKDLLKVAKEFEDLPAYERYFMVSGLKGKGVKDLVQF 318

Query: 358 I-KSILSNKFKKLPFSI-----------PSHKRHLYHLSQTVRY 389
           + +  +   + + P ++              ++ L H+ Q + Y
Sbjct: 319 LMEQAVRRPWDEEPTTMTEEVMKTISLEVVREKMLDHIHQEIPY 362


>gi|15606865|ref|NP_214245.1| hypothetical protein aq_1815 [Aquifex aeolicus VF5]
 gi|6226469|sp|O67679|ENGB_AQUAE RecName: Full=Probable GTP-binding protein EngB
 gi|2984110|gb|AAC07648.1| hypothetical protein aq_1815 [Aquifex aeolicus VF5]
          Length = 183

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 26/164 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRE 279
           +V +G SN GKSSL N +    VA V+  PG TR V    LD + YLV +     A +  
Sbjct: 21  VVFVGRSNVGKSSLLNMVVGSKVAKVSKTPGRTRAVNYFLLDKKLYLVDVPGYGYAKVGR 80

Query: 280 TDDIVEKEGIKRTFLE----VENA----DLILLLKEINSKKEISFPK--NIDFIFIGTKS 329
            +    ++ ++R F E    ++ A    D +  ++ ++ ++ I + +   I F  + TK 
Sbjct: 81  EEMEKWRKMMERYFKERKDNIKMAFLLIDAVAGVQPLD-EQMIEWFEYYGIPFTVVITKI 139

Query: 330 DLYST-------------YTEEYDHLISSFTGEGLEELINKIKS 360
           D  S                +    L S+  G+G +EL+++I +
Sbjct: 140 DKASQSEIAKTLKQVKRYVGDGAIVLSSAKEGKGKKELLSRILN 183


>gi|325295520|ref|YP_004282034.1| ferrous iron transport protein B [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065968|gb|ADY73975.1| ferrous iron transport protein B [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 669

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 24/205 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++   K+ + G+ N GK+++ NALA  +   V + PG T        +  G  +++ D  
Sbjct: 1   MKRNIKVALAGNPNVGKTAIMNALAGTNEK-VGNWPGVTVKKKIGRYNFRGVDIELIDLP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISFPK-NIDFIFIGTKS 329
           GI        +E + R FL  E  D +L + ++     N    I   +  I  I +  K+
Sbjct: 60  GIYSLTSYTLEERVTRNFLLKEKYDAVLDIVDVTLLGRNLYLTIELLEMGIKPILVLNKT 119

Query: 330 D------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           D            +     E     IS+   +GLEEL   I  + +   K  P  I    
Sbjct: 120 DELRNAGYTIDKKILEDILELPVVSISAIRRKGLEELSETILRVATGDLK--PKGIIPT- 176

Query: 378 RHLYHLSQTVRYLEMASLNEKDCGL 402
            +   L   +  L +  + E++   
Sbjct: 177 -YSEDLENAI-SLLLLKMKEENIPY 199


>gi|116754015|ref|YP_843133.1| small GTP-binding protein [Methanosaeta thermophila PT]
 gi|116665466|gb|ABK14493.1| small GTP-binding protein [Methanosaeta thermophila PT]
          Length = 572

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 20/158 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            KI+++G+ N GKS +F+ L   D AI ++ PGTT       +++ G    + D  G+  
Sbjct: 7   LKILLMGNPNVGKSVIFSRLTGAD-AISSNYPGTTVSYTEGSINVLGRSAALIDVPGVYS 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
            D   + E +    LE + ADLI+ + +  + +           + I  +      D+  
Sbjct: 66  LDPSSKAEEVANLILE-QGADLIVNVVDATNLERNLNLTLELQERGIPMVVALNLWDVAV 124

Query: 334 TYTEEYD------------HLISSFTGEGLEELINKIK 359
               E D                + +G G+ +L+  I+
Sbjct: 125 RRGLEIDVKRLSEELGIKVVPTVAASGLGIRDLVEAIE 162


>gi|317012333|gb|ADU82941.1| GTP-binding protein Era [Helicobacter pylori Lithuania75]
          Length = 301

 Score = 64.9 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 81/217 (37%), Gaps = 28/217 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   L+         + S ++
Sbjct: 128 THKQVLQKLQEYQQYASQFLDLVPLSAKKSQNLNALLECISKYLNPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAENLR 410
                 + +R     +L      E D  +D   E  R
Sbjct: 188 MRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEER 224


>gi|271501406|ref|YP_003334431.1| GTP-binding protein HSR1-like protein [Dickeya dadantii Ech586]
 gi|270344961|gb|ACZ77726.1| GTP-binding protein HSR1-related protein [Dickeya dadantii Ech586]
          Length = 291

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 16/137 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + AGKSSL NAL K DV+ V+D+   TR+ L + + +  + + + D  G+ E+ 
Sbjct: 39  IGIIGKTGAGKSSLCNALFKGDVSAVSDVSACTREPLRLRISVGRHSLTLVDLPGVGESL 98

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIGTKSDL 331
              ++E  +     +   DL+L + + +           ++ I        +F+  ++D 
Sbjct: 99  -TRDREYRQLYQEWLPRLDLVLWVIKADDRALSIDEQFYRQVIGEAHRHKVLFVVNQADK 157

Query: 332 YSTYTEEYDHLISSFTG 348
                 E  H   S TG
Sbjct: 158 I-----EPCHEWDSLTG 169


>gi|310124169|ref|XP_003119236.1| PREDICTED: putative GTP-binding protein 6-like isoform 1 [Homo
           sapiens]
 gi|310124171|ref|XP_003119237.1| PREDICTED: putative GTP-binding protein 6-like isoform 2 [Homo
           sapiens]
 gi|310124267|ref|XP_003119246.1| PREDICTED: putative GTP-binding protein 6-like isoform 1 [Homo
           sapiens]
 gi|310124269|ref|XP_003119247.1| PREDICTED: putative GTP-binding protein 6-like isoform 2 [Homo
           sapiens]
          Length = 267

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 93/251 (37%), Gaps = 27/251 (10%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           E       + +      ++  +     +    +     R    I ++G++N GK++L  A
Sbjct: 5   ESFMQLQQRLLREKEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIKA 64

Query: 239 LAKKDVAIV-TDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRETDDIVEKEGIKRTFLEV 296
           L   D AI   D    T DV      L   +  +  DT G          E    T  +V
Sbjct: 65  LTG-DAAIQPRDQLFATLDVTAHAGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDV 123

Query: 297 ENADLILLLKEINSKK---------------EISFPKNIDFIFIGTKSDLYSTY--TEEY 339
            ++DLIL +++++  +               ++  P     + +  K DL   Y  TE  
Sbjct: 124 AHSDLILHVRDVSHPEAELQKCSVLSTLRGLQLPAPLLDSMVEVHNKVDLVPGYSPTEPN 183

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
              +S+  G GL+EL  ++ + +     +   ++    R     +Q     + A++ E D
Sbjct: 184 VVPVSALRGHGLQELKAELDAAVLKATGRQILTL----RVRLAGAQLSWLYKEATVQEVD 239

Query: 400 CGLDIIAENLR 410
              +  A ++R
Sbjct: 240 VIPEDGAADVR 250


>gi|260774637|ref|ZP_05883544.1| GTP-binding protein HflX [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609427|gb|EEX35572.1| GTP-binding protein HflX [Vibrio coralliilyticus ATCC BAA-450]
          Length = 429

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 94/269 (34%), Gaps = 31/269 (11%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + + +
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRD 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   +     Q + G   RN      I ++G++NAGKS++FN + +  V    D  
Sbjct: 170 RIKAILRRLEKVAKQREQGRRSRNRAEIPTISLVGYTNAGKSTMFNRITEAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     ++L       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKIELADVGTAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASD 288

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGE 349
           ++            E      +  + +  K D         +           +S+  G 
Sbjct: 289 ERFRENIHAVHEVLEEIGAHEVPALLVMNKIDNLEDQKPRIERDEEGIPRAVWVSAMEGI 348

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKR 378
           G+E L + +   L+++  +    IP   +
Sbjct: 349 GVELLFDALTERLASQMVQYQLRIPPQHQ 377


>gi|261224229|ref|ZP_05938510.1| hypothetical protein EscherichiacoliO157_06435 [Escherichia coli
           O157:H7 str. FRIK2000]
          Length = 204

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 13/139 (9%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL +  V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGVVTPVSDVHAGTREVRRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSK--------- 311
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + +         
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAESEALYRDI--LPELDLVLWLIKADDRALSVDEYFW 136

Query: 312 KEISFPKNIDFIFIGTKSD 330
           + I    +   +F+ T++D
Sbjct: 137 RHILHRGHQQVLFVVTQAD 155


>gi|332876597|ref|ZP_08444357.1| ferrous iron transport protein B [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332685430|gb|EGJ58267.1| ferrous iron transport protein B [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 719

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 74/206 (35%), Gaps = 25/206 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y I + G+ N GKS++FNAL         +  G T           G   K+ D  G   
Sbjct: 28  YTIALAGNPNTGKSTVFNALTGLHQ-HTGNWTGKTVTRAEGSFSFGGTRYKMIDLPGTYS 86

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
                E E + R F+     D+ +++ +  S+ E +    +  + I  K  L     +E 
Sbjct: 87  LLSTSEDEEVARDFILFGKPDVTVVVVDA-SRLERNLSLALQILEITDKVVLCLNLMDEA 145

Query: 340 DHLISSF-------------------TGEGLEELINKIKSILSNKFKKLPFSIP----SH 376
                S                    T EG+ +L+  I++++S  F+    +       +
Sbjct: 146 RRHHISIDTRTLSRDLGIPVVATSARTKEGITDLLQAIEAVVSGAFQTKKQTFIDLPKQN 205

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGL 402
              +  LSQ +  L  A  N +   +
Sbjct: 206 AEAIAQLSQLLSELNPALPNTRWLAM 231


>gi|237654041|ref|YP_002890355.1| GTP-binding proten HflX [Thauera sp. MZ1T]
 gi|237625288|gb|ACR01978.1| GTP-binding proten HflX [Thauera sp. MZ1T]
          Length = 385

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 69/193 (35%), Gaps = 23/193 (11%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG---TTRD 256
              I       +     R+   + ++G++NAGKS+LFNAL K        +     TT  
Sbjct: 178 LAQIEKQRKVRRRARERRDVLSVSLVGYTNAGKSTLFNALTKAGAYAADQLFATLDTTSR 237

Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            L +  +  G  V +SDT G             + T  E   ADL+L + +  S+   + 
Sbjct: 238 RLYVGGEGAGASVVLSDTVGFIRDLPHALVAAFQATLEETAQADLLLHVVDSASEDRDAQ 297

Query: 317 ------------PKNIDFIFIGTKSDLYSTYTE--------EYDHLISSFTGEGLEELIN 356
                         ++  I +  K DL                   +S+ TGEGL+ L +
Sbjct: 298 IGAVNQVLAEIGAADVPQILVWNKIDLTRAAAAVERGDCGTIRRIFLSARTGEGLDLLRD 357

Query: 357 KIKSILSNKFKKL 369
            +  +    F   
Sbjct: 358 ALAEVARQTFGDN 370


>gi|76155787|gb|AAX27064.2| SJCHGC02949 protein [Schistosoma japonicum]
          Length = 188

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 4/114 (3%)

Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262
           +   + Q           KI ++G  N+GKSSL N L K  V  V+    TTR   T   
Sbjct: 47  LEKLLLQQPHSPPDARVLKIAVIGCPNSGKSSLVNMLTKWKVCAVSGKAHTTRSKQTAAF 106

Query: 263 DLEGYLVKISDTAGIRETDDIV----EKEGIKRTFLEVENADLILLLKEINSKK 312
             +   +   D  G+           EK  I+     + ++DLIL++ +++ K+
Sbjct: 107 FQDNVQLAFVDLPGLVSKSKASRFKLEKTFIRDPHSAIFDSDLILVVIDVSHKE 160


>gi|46198506|ref|YP_004173.1| GTP-binding protein hflX [Thermus thermophilus HB27]
 gi|46196128|gb|AAS80546.1| GTP-binding protein hflX [Thermus thermophilus HB27]
          Length = 550

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 91/247 (36%), Gaps = 21/247 (8%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E Q ++ +  +   L  L G+  + ++ +   I        + +V     ++ +
Sbjct: 292 LHAKTPEAQAQVELAQLRYLLPRLVGKGKE-MSRLGGGIGTRGPGETKLEVDRRRLQDRI 350

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             +     D +    + +     R    + ++G++NAGK++L  AL +        +  T
Sbjct: 351 AHLSRKLQDYALRRQEARQKRKRRGVPLVAVVGYTNAGKTTLLRALTRAGEEGEDKLFAT 410

Query: 254 TRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
            R +      L G   V  +DT G             + T  EV  AD+++ + + + + 
Sbjct: 411 LRPLTRRGF-LPGVGEVLFTDTVGFIRHMPEELLTAFRATLEEVREADVLVHVLDASEEG 469

Query: 313 EISFPK-----------NIDFIFIGTKSDLYSTYTEEY------DHLISSFTGEGLEELI 355
            +   +               +    K+D  + Y   +         +S+  G GL+EL 
Sbjct: 470 ALERHRVVRDLLLDLGVEAPVVLALNKADRAAPYDLYFLGERLGGVPVSALKGTGLKELK 529

Query: 356 NKIKSIL 362
             +   L
Sbjct: 530 EALARAL 536


>gi|324994692|gb|EGC26605.1| GTP-binding protein HflX [Streptococcus sanguinis SK678]
          Length = 412

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 90/235 (38%), Gaps = 25/235 (10%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  KD     ++   T D 
Sbjct: 177 RQLKAVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNCLTSKDQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T +++L G L V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKNINLSGQLNVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPHHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKI 358
            K            +I  + +  K+D    +T     + + S   +    L+ ++
Sbjct: 296 EKTVLDIMNELDMLDIPRLTLYNKADKTEDFTPTLTPYSLISAKADNSRALLQQV 350


>gi|255026347|ref|ZP_05298333.1| hypothetical protein LmonocytFSL_08385 [Listeria monocytogenes FSL
           J2-003]
          Length = 407

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 104/297 (35%), Gaps = 53/297 (17%)

Query: 82  EFHVHGGIA---VVNGILEELAKMPNLRLANPGEFSRRAFE-----------NGKIDLLE 127
           E H     A   V++ ++++L ++        G+ +  A             N ++   +
Sbjct: 27  ELHSLAKTANAEVMDELIQKLERVNQASFIGSGKLNELAALVEMHEADVVIFNSELSATQ 86

Query: 128 AESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKL-------THIRSFIE 173
             +++  + +      Q  L   +M      G+L   Y Q+   L         +     
Sbjct: 87  VRNISAAVEARIIDRTQLILDIFAMRAKSREGKLQVAYAQYKYLLPRLSGQGISLSKLGG 146

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG----YKIVILGHSN 229
                   E       + +   +  +K  + +H+ Q +   I R      ++  ++G++N
Sbjct: 147 GIGSRGPGESKLEMDKRHIREKMHDIKAQL-THVEQHRKRIIERRNTQSVFRFGLIGYTN 205

Query: 230 AGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           AGKS++FN L  +    +  +   +  TTR V        G+   ++DT G  +      
Sbjct: 206 AGKSTIFNRLTNETTLQENKLFATLDPTTRKVRF----SGGFQALLTDTVGFIQDLPTTL 261

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSD 330
               + T  E  N D+++ + + ++   +                ++  + I  K D
Sbjct: 262 IAAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMD 318


>gi|283851360|ref|ZP_06368642.1| ferrous iron transport protein B [Desulfovibrio sp. FW1012B]
 gi|283573310|gb|EFC21288.1| ferrous iron transport protein B [Desulfovibrio sp. FW1012B]
          Length = 728

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 19/163 (11%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              ++ + G  N GKS++FNA+     A V + PG T D L       G +  + D  G 
Sbjct: 3   ESIRVAVSGQPNCGKSTMFNAITGGS-ARVGNYPGITVDRLEGTYRQNGTISHLVDLPGT 61

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------------EISFPKN 319
                   +E + R  +  E+ D+++ + +  + +                   ++    
Sbjct: 62  YSLTSYSMEELVARNVIVDEHPDVVINMVDATALERSLYLALQLLEIGAPLVLGLNMMDE 121

Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           +    +    D  S           +  G+G EEL+  + ++ 
Sbjct: 122 VKRSGVTINVDRLSKLLGVPVVPCVARVGQGREELMQAVAAVA 164


>gi|169827484|ref|YP_001697642.1| GTP-binding protein [Lysinibacillus sphaericus C3-41]
 gi|168991972|gb|ACA39512.1| GTP-binding protein [Lysinibacillus sphaericus C3-41]
          Length = 231

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 19/117 (16%)

Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLLKEI 308
           GTTRD +      E     I DTAG+R+   I    EK  + R    +E +D++L++  +
Sbjct: 3   GTTRDAIDTPYAYEDQEYVIIDTAGMRKKGKIYETTEKYSVLRALRAIERSDVVLVV--L 60

Query: 309 NSKKEI----------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           N+++ I          +       + +  K D      E+ +  ++ FT +  E  +
Sbjct: 61  NAEEGIQEQDKKIAGYAHEAGKAVVIVVNKWDAI----EKDEKTMNVFTQQIREHFL 113


>gi|254787455|ref|YP_003074884.1| GTP-binding proten HflX [Teredinibacter turnerae T7901]
 gi|237686849|gb|ACR14113.1| GTP-binding proten HflX [Teredinibacter turnerae T7901]
          Length = 444

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/305 (17%), Positives = 96/305 (31%), Gaps = 39/305 (12%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + +  
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRA 170

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   +     Q + G   RN      + ++G++NAGKS+LFNA+    V    D  
Sbjct: 171 RIKTIGKRLEKVRKQREQGRRARNRADIPTVSLVGYTNAGKSTLFNAITDAGV-FAQDQL 229

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     + L       ++DT G          E  + T  E  ++DL+L + +   
Sbjct: 230 FATLDPTMRRIGLPDVGPAVLADTVGFISNLPHRLVESFRATLEEASSSDLLLHVIDAAD 289

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------------ISS 345
            +            E      +  + +  K DL S      D                ++
Sbjct: 290 DERQRNIEQVNLVLEEIDAHELPCLMVYNKIDLLSDMAPRIDRDDQGRPVAVWLSAKNAA 349

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
                +  L   +  +L+    +    + +    L    +   Y   A LNE      I 
Sbjct: 350 DNPVNISLLFQALAELLAEDIFQQSVYLGAAMGSL----RARLYRHNAVLNESYTPDGIC 405

Query: 406 AENLR 410
              +R
Sbjct: 406 ELEIR 410


>gi|255018412|ref|ZP_05290538.1| GTP-binding protein Era [Listeria monocytogenes FSL F2-515]
          Length = 68

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271
           + E  ++G+ + I+G  N GKS+L N +  + +AI++D   TTR+ +      +   +  
Sbjct: 1   MSEPFKSGF-VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIF 59

Query: 272 SDTAGIRE 279
            DT GI +
Sbjct: 60  IDTPGIHK 67


>gi|218200669|gb|EEC83096.1| hypothetical protein OsI_28232 [Oryza sativa Indica Group]
          Length = 437

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 80/224 (35%), Gaps = 44/224 (19%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           G++ E  +    + I+G  NAGKSSL N +    VA V+    TT   +   L      +
Sbjct: 139 GEVREEDQMSLSVGIVGAPNAGKSSLTNTMVGTKVAAVSRKTNTTTHEILGVLTKGITQI 198

Query: 270 KISDTAGIRETDDIVEKE----GIKRTFLEVENADLILLLKEIN--------------SK 311
              DT G+      +        ++  +  +   DL+++L ++N               +
Sbjct: 199 CFFDTPGLMLGHHGLPHRDVTVRVESAWSSINLYDLLIVLFDVNRHLKTPDTRVVKLIKR 258

Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTE--------------EYDHLISSFTGEGLEELINK 357
                  N   I    K DL     +              E   ++S   G+G+++L+  
Sbjct: 259 LGAEVNPNQKRILCMNKVDLVEDKKDLLKVAKEFEDLPAYERYFMVSGLKGKGVKDLVQF 318

Query: 358 I-KSILSNKFKKLPFSI-----------PSHKRHLYHLSQTVRY 389
           + +  +   + + P ++              ++ L H+ Q + Y
Sbjct: 319 LMEQAVRRPWDEEPTTMTEEIMKTISLEVVREKMLDHIHQEIPY 362


>gi|126655845|ref|ZP_01727284.1| GTP-binding protein, HSR1-related [Cyanothece sp. CCY0110]
 gi|126623324|gb|EAZ94029.1| GTP-binding protein, HSR1-related [Cyanothece sp. CCY0110]
          Length = 527

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 24/203 (11%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA---- 245
           +  ++ +    N + SH S+ +     +    I I+G++NAGKS+L NAL   +V     
Sbjct: 322 QRRISRLQQEVNKLQSHRSRLRQQRQKQEVPTIAIVGYTNAGKSTLINALTNAEVYTADQ 381

Query: 246 IVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +   +  TTR +  ID D +  Y   ++DT G          +  + T  EV  AD +L 
Sbjct: 382 LFATLDPTTRRLSGIDSDTQQLYTFLLTDTVGFIHELPPSLVDAFRATLEEVTEADALLH 441

Query: 305 LKEINSKKEISFPKNI------------DFIFIGTKSDLYSTYT-----EEYD--HLISS 345
           L +++        +++              + +  K D     T     EEY     IS+
Sbjct: 442 LVDLSHPAWQHHIQSVMTILQEMPLVPGPILLVFNKIDTVDGETLRVAQEEYPLAVFISA 501

Query: 346 FTGEGLEELINKIKSILSNKFKK 368
               GLE L +K+  ++      
Sbjct: 502 SQRLGLETLRSKLGQLVEYALNN 524


>gi|3676071|emb|CAA76979.1| ERG protein [Arabidopsis thaliana]
          Length = 375

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 80/226 (35%), Gaps = 40/226 (17%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
              + +G++ E  +    + I+G  NAGKSSL N +    VA  +    TT   +   L 
Sbjct: 107 DEELGEGEVREEDQKSLNVGIIGPPNAGKSSLTNFMVGTKVAAASRKTNTTTHEVLGVLT 166

Query: 264 LEGYLVKISDTAGIRET----DDIVEKEGIKRTFLEVENADLILLLKEI----------- 308
                V   DT G+            K  ++  +  V+  D+++++ ++           
Sbjct: 167 KGDTQVCFFDTPGLMLKKSGYGYKDIKARVQNAWTSVDLFDVLIVMFDVHRHLMRVVRLI 226

Query: 309 ------NSKKEISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLISSFTGEGLEELI 355
                  + K+           +  K DL     E       E   +IS   G G+++L 
Sbjct: 227 KYMGEEENPKQKRVLCMNKVDLVEKKKDLLKVAEEFQDLPAYERYFMISGLKGSGVKDLS 286

Query: 356 NKI-KSILSNKFKKLPFSI-----------PSHKRHLYHLSQTVRY 389
             +    +   +++  F++              +R L H+ Q + Y
Sbjct: 287 QYLMDQAVKKPWEEDAFTMSEEVLKNISLEVVRERLLDHVHQEIPY 332


>gi|294678826|ref|YP_003579441.1| GTP-binding protein Era [Rhodobacter capsulatus SB 1003]
 gi|294477646|gb|ADE87034.1| GTP-binding protein Era [Rhodobacter capsulatus SB 1003]
          Length = 303

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 72/200 (36%), Gaps = 23/200 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT GI    
Sbjct: 10  VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVCMAGTAQLVFVDTPGIFRPR 69

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK----NIDFIFIGTKSDL 331
             +++  +   +    +AD+++LL E        +K  I   K             K D 
Sbjct: 70  RRLDRAMVSAAWGGAADADIVVLLIEAHRGLTEGAKAIIEALKAREGTQPVALAINKIDR 129

Query: 332 Y-------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                         + +      +IS+  G G+++L + + S +       P    +   
Sbjct: 130 VKAERLLALAEEMNAAFPFAKTFMISAEKGYGVDDLRDWLASQVPAGPWFYPEDQIADLP 189

Query: 379 HLYHLSQTVRYLEMASLNEK 398
                ++  R      L+E+
Sbjct: 190 MRMIAAEITREKLTLRLHEE 209


>gi|289434578|ref|YP_003464450.1| GTP-binding protein HflX [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170822|emb|CBH27364.1| GTP-binding protein HflX [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 409

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 112/314 (35%), Gaps = 33/314 (10%)

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLT 166
           A       RA +   ID  +       + ++++    +++       L          L+
Sbjct: 86  ATQVRNISRAVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYK-YLLPRLSGQGVLLS 144

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            +   I +      + ++     +E ++DI      +  H  +       ++ ++  ++G
Sbjct: 145 KLGGGIGSRGPGETKLEMDKRHIREKMHDIKAQLTHVEQHRKRIIDRRNGQSVFRFGLIG 204

Query: 227 HSNAGKSSLFNALAK----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           ++NAGKS++FN L      ++  +   +  TTR +        G+   ++DT G  +   
Sbjct: 205 YTNAGKSTIFNRLTNETTLEEDKLFATLDPTTRKIRF----SGGFQALLTDTVGFIQDLP 260

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSD 330
                  + T  E  N D+++ + + +    +                +I  + +  K D
Sbjct: 261 TTLIAAFRSTLEETANVDVLIHVVDASDLDYLQHETTVLALLEELEMNHIPILTVYNKMD 320

Query: 331 LYST--YTEEYDHLIS--------SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
             +     +  +H++         S   + + ELI K  S  + +  +      +  +  
Sbjct: 321 QVAENFIPDRPEHILISALNEKAPSIIKQRMIELIEKNWSFFTKELSEASGKELAQIKQH 380

Query: 381 YHLSQTVRYLEMAS 394
             +++ + YLE   
Sbjct: 381 AWITK-LEYLENKQ 393


>gi|154248957|ref|YP_001409782.1| ferrous iron transport protein B [Fervidobacterium nodosum Rt17-B1]
 gi|154152893|gb|ABS60125.1| ferrous iron transport protein B [Fervidobacterium nodosum Rt17-B1]
          Length = 628

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 19/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + +LG+ N GK+SLFN L       V + PG T   +        Y +   D  G+  
Sbjct: 3   ITVGLLGNPNVGKTSLFNKLVGA-RQYVANWPGVTVTRIEGATSYRDYTLHFVDLPGVYS 61

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                  E + R FL     ++ +++ +  + ++       S    ++ + +    D   
Sbjct: 62  LSATSLDEKVTRDFLLFTPPNVTVVVIDSMTPEQGMYLLLESLELGLNVVAVFNTIDEAK 121

Query: 334 TYTEEYDHL------------ISSFTGEGLEELINKIKSIL 362
                 D               S+ TGEG++EL   I +  
Sbjct: 122 KNGINIDKEALQTFLGVPVVLTSAHTGEGIDELKETIINSF 162


>gi|304387463|ref|ZP_07369654.1| GTP-binding protein HflX [Neisseria meningitidis ATCC 13091]
 gi|304338556|gb|EFM04675.1| GTP-binding protein HflX [Neisseria meningitidis ATCC 13091]
          Length = 392

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 72/213 (33%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDV 244
             + + + I  LK  +SS   Q  L    R   +I    ++G++N GKSSLFN L K  +
Sbjct: 180 DRRLIAHRINALKKQLSSLKKQRALRRKSRESGRIKTFALVGYTNVGKSSLFNRLTKSGI 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 240 YAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDLPHKLISAFSATLEETAQADVLLH 299

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 300 VVDAAAPNSGQQIEDVENVLQEIHAGDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 360 RISVAENTGIDALREAIAESCAAAPNTDETEMP 392


>gi|163738239|ref|ZP_02145655.1| GTP-binding protein Era [Phaeobacter gallaeciensis BS107]
 gi|161388855|gb|EDQ13208.1| GTP-binding protein era [Phaeobacter gallaeciensis BS107]
          Length = 301

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 24/172 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGESQIVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFP------KNIDFIFIG 326
           + +    +++  +   +    +AD+++L+ E    I    E          +        
Sbjct: 63  LFQPRRRLDRAMVAAAWGGAADADVVVLMVEAHRGITEGVERILEGLENIGEGRKIALAI 122

Query: 327 TKS-------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            K              DL   Y      +IS+  G G++ L   +   L   
Sbjct: 123 NKIDRVQSAVLLGLTKDLNERYAFADTFMISAEKGHGVDHLRGWLAEQLPEG 174


>gi|187928158|ref|YP_001898645.1| GTP-binding proten HflX [Ralstonia pickettii 12J]
 gi|187725048|gb|ACD26213.1| GTP-binding proten HflX [Ralstonia pickettii 12J]
          Length = 417

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 29/203 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + +      L +++     Q       R   + + + ++G++NAGKS+LFNAL K 
Sbjct: 165 ELDRRMLDERAKRLSSELDKLQRQHDTQRRSRSRNDAFSVSLVGYTNAGKSTLFNALTKA 224

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
             A   +    T D  +  L LEG   V +SDT G             + T  E  +AD+
Sbjct: 225 -RAYAANQLFATLDTTSRRLYLEGLGNVVLSDTVGFIRDLPTQLVAAFRATLEETVHADV 283

Query: 302 ILLLKE------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD--------- 340
           +L + +            ++   +      I  I +  K D                   
Sbjct: 284 LLHVVDAASTVKHEQMEQVDRVLDEINASGIPQILVMNKIDAAEELRAAGPRIERDETGA 343

Query: 341 ---HLISSFTGEGLEELINKIKS 360
                +S+  G GL+ L   +  
Sbjct: 344 VRRVFVSAIEGTGLDLLREALVE 366


>gi|46907522|ref|YP_013911.1| GTP-binding domain-containing protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|46880790|gb|AAT04088.1| GTP-binding domain protein [Listeria monocytogenes serotype 4b str.
           F2365]
          Length = 409

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 115/336 (34%), Gaps = 54/336 (16%)

Query: 82  EFHVHGGIA---VVNGILEELAKMPNLRLANPGEFSRRAFE-----------NGKIDLLE 127
           E H     A   VV+ ++++L ++        G+    A             N ++   +
Sbjct: 29  ELHSLAKTANGEVVDELIQKLERVNQASFIGSGKLEELATLVEMHEADVVIFNSELSATQ 88

Query: 128 AESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKL-------THIRSFIE 173
             +++  + +      Q  L   +M      G+L   Y Q+   L         +     
Sbjct: 89  VRNISKAVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQGVSLSKLGG 148

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDI---SSHISQGKLGEIIRNGYKIVILGHSNA 230
                   E       + +   +  +K  +     H  +      I++ ++  ++G++NA
Sbjct: 149 GIGSRGPGESKLEMDKRHIREKMHDIKAQLTHVEQHRKRIIERRNIQSVFRFGLIGYTNA 208

Query: 231 GKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
           GKS++FN L  +    +  +   +  TTR +        G+   ++DT G  +       
Sbjct: 209 GKSTIFNRLTNETTLQEDKLFATLDPTTRKIRF----SGGFQALLTDTVGFIQDLPTTLI 264

Query: 287 EGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYST 334
              + T  E  N D+++ + + ++   +                ++  + I  K D    
Sbjct: 265 AAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMDQAPA 324

Query: 335 ---YTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                +  + LIS+   E  + +  ++  ++   + 
Sbjct: 325 TFVPDQPENLLISALDQEAPDTIKQRMIQLIEKNWA 360


>gi|238764693|ref|ZP_04625637.1| GTP-binding protein hflX [Yersinia kristensenii ATCC 33638]
 gi|238697089|gb|EEP89862.1| GTP-binding protein hflX [Yersinia kristensenii ATCC 33638]
          Length = 434

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 92/278 (33%), Gaps = 26/278 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ ++
Sbjct: 114 RARTHEGKLQVELAQLRHIATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDRIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     ++    QG+      +   + ++G++NAGKSSLFN +   DV     +  T 
Sbjct: 173 LILSRLERVAKQREQGRRARTRADIPTVSLVGYTNAGKSSLFNKITAADVYAADQLFATL 232

Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314
              L      +     ++DT G             K T  E   A L+L + +    +  
Sbjct: 233 DPTLRRITVADVGDTVLADTVGFIRHLPHDLVAAFKATLQETRQASLLLHIIDAADPRVA 292

Query: 315 S------------FPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLEE 353
                            I  + +  K DL   +    D           +S+ TG G+  
Sbjct: 293 ENMAAVDSVLAEIEADEIPTLLVMNKIDLLDDFIPRIDRNEENLPVRVWLSAQTGAGIPL 352

Query: 354 LINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
           L   +   LS +       +P      R  ++  Q + 
Sbjct: 353 LFQALTERLSGEIAHFELRLPPQAGRLRSRFYQLQAIE 390


>gi|55980535|ref|YP_143832.1| GTP-binding protein HflX [Thermus thermophilus HB8]
 gi|55771948|dbj|BAD70389.1| GTP-binding protein HflX [Thermus thermophilus HB8]
          Length = 503

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 91/247 (36%), Gaps = 21/247 (8%)

Query: 135 ISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + ++T E Q ++ +  +   L  L G+  + ++ +   I        + +V     ++ +
Sbjct: 245 LHAKTPEAQAQVELAQLRYLLPRLVGKGKE-MSRLGGGIGTRGPGETKLEVDRRRLQDRI 303

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             +     D +    + +     R    + ++G++NAGK++L  AL +        +  T
Sbjct: 304 AHLSRKLQDYALRRQEARQKRKRRGVPLVAVVGYTNAGKTTLLRALTRAGEEGEDKLFAT 363

Query: 254 TRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
            R +      L G   V  +DT G             + T  EV  AD+++ + + + + 
Sbjct: 364 LRPLTRRGF-LPGVGEVLFTDTVGFIRHMPEELLTAFRATLEEVREADVLVHVLDASEEG 422

Query: 313 EISFPK-----------NIDFIFIGTKSDLYSTYTEEY------DHLISSFTGEGLEELI 355
            +   +               +    K+D  + Y   +         +S+  G GL+EL 
Sbjct: 423 ALERHRVVRDLLLDLGVEAPVVLALNKADRAAPYDLYFLGERLGGVPVSALKGTGLKELK 482

Query: 356 NKIKSIL 362
             +   L
Sbjct: 483 EALARAL 489


>gi|238787540|ref|ZP_04631338.1| GTP-binding protein hflX [Yersinia frederiksenii ATCC 33641]
 gi|238724327|gb|EEQ15969.1| GTP-binding protein hflX [Yersinia frederiksenii ATCC 33641]
          Length = 427

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 113/354 (31%), Gaps = 50/354 (14%)

Query: 70  PSPESFTGEDSAE-----FHVHGGIAVV-NGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           P P+ F GE  AE         G   V+ +  L    +    RL                
Sbjct: 52  PHPKYFVGEGKAEEIADAVKASGASVVLFDHALSAAQERNLERLCE-------------C 98

Query: 124 DLLEAESLADLISSETEMQR----RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            +++   L   I ++         ++ +  +    + L   W   L   +  I       
Sbjct: 99  RVIDRTGLILDIFAQRARTHEGKLQVELAQLRHIATRLVRGWTH-LERQKGGIGLRGPGE 157

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            + +      ++ ++ IL     ++    QG+      +   + ++G++NAGKSSLFN +
Sbjct: 158 TQLETDRRLLRDRISLILSRLERVAKQREQGRRARTRADIPTVSLVGYTNAGKSSLFNKI 217

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
              DV    D    T D     +++       ++DT G             K T  E   
Sbjct: 218 TAADV-YAADQLFATLDPTLRRINVADVGDTVLADTVGFIRHLPHDLVAAFKATLQETRQ 276

Query: 299 ADLILLLKEINSKKEIS------------FPKNIDFIFIGTKSDLYSTYTEEYD------ 340
           A L+L + +    +                   I  + +  K DL   +    D      
Sbjct: 277 ASLLLHIIDAADPRVAENMAAVDSVLAEIEADEIPTLLVMNKIDLLDDFVPRIDRNEENL 336

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
                +S+ TG G+  L   +   LS +       +P      R  ++  Q + 
Sbjct: 337 PVRVWLSAQTGAGIPLLFQALTERLSGEIAHFELRLPPQAGRLRSRFYQLQAIE 390


>gi|255526143|ref|ZP_05393064.1| GTP-binding proten HflX [Clostridium carboxidivorans P7]
 gi|296187154|ref|ZP_06855551.1| GTP-binding protein HflX [Clostridium carboxidivorans P7]
 gi|255510192|gb|EET86511.1| GTP-binding proten HflX [Clostridium carboxidivorans P7]
 gi|296048189|gb|EFG87626.1| GTP-binding protein HflX [Clostridium carboxidivorans P7]
          Length = 592

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 100/274 (36%), Gaps = 39/274 (14%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI 207
                ++     Q   +L  +                +    K++  D   ++  I   I
Sbjct: 282 RSREAKIQVELAQLKYRLPRLSGLGTVLSRTGGGIGTKGPGEKKLETDKRHIREKIYDLI 341

Query: 208 SQGKLGEIIRNGY--------KIVILGHSNAGKSSLFNALA---------KKDVAIVTDI 250
            + K  + +R           K+ ++G++NAGKS+L N L           K+     D+
Sbjct: 342 KELKKIKQVRETQRERRNELQKVSLVGYTNAGKSTLRNKLCEIAMPKEAVHKEKVFEADM 401

Query: 251 PGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T D+ T  ++L +  ++ ++DT G          E  K T  EV  +DL+L + +I+
Sbjct: 402 LFATLDITTRAIELSDSRIITVTDTVGFIRKLPHDLVEAFKSTLEEVIYSDLLLHVVDIS 461

Query: 310 S---KKEISF---------PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTG 348
           S   +++I             N   + +  K D         +   Y +     IS+   
Sbjct: 462 SDYVEEQIDAVNSVLGQLGVNNKPMMLVLNKIDKASKERIEEIKEKYNKIEVVCISAKQE 521

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382
             L+ L+ ++  +L    K+  + IP   + +  
Sbjct: 522 HNLDLLLQEVSKLLPYTLKEAEYLIPYTDQSMVA 555


>gi|224043030|ref|XP_002195101.1| PREDICTED: similar to MGC83645 protein [Taeniopygia guttata]
          Length = 473

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 83/210 (39%), Gaps = 21/210 (10%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKKDV 244
            ++ +    L ++N +     +  L    R       + ++G++N+GK++L  AL  +  
Sbjct: 211 QNRVLKERELKIRNALEKLRRKRALLRAQRRKCEFPMVSVMGYTNSGKTTLIKALTGEAG 270

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D+      L  ++  I  DT G          E    T  EV  +DLI+
Sbjct: 271 LQPRDQLFATLDITAHAGYLPSHMAVIYVDTIGFLTDLPHNLVESFSATLEEVAYSDLIV 330

Query: 304 LLKEINSKKEI-------SFPKNIDFI--------FIGTKSDLYSTY--TEEYDHLISSF 346
            +++I   + I       S  +N++           +  K DL   Y  TEE    +S+ 
Sbjct: 331 HVRDITHPETILQKATVLSVLRNLNLPSHLLDSMVEVHNKVDLTERYKPTEENALAVSAL 390

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSH 376
            G GLEEL  +I+  +     K   ++  +
Sbjct: 391 HGYGLEELKQEIEKKILTATGKKILTVNIN 420


>gi|193213078|ref|YP_001999031.1| ferrous iron transport protein B [Chlorobaculum parvum NCIB 8327]
 gi|193086555|gb|ACF11831.1| ferrous iron transport protein B [Chlorobaculum parvum NCIB 8327]
          Length = 784

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 23/201 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G+ N GK++LFNAL   +   V + PG T D  T     +G   ++ D  GI    
Sbjct: 23  VAVVGNPNCGKTTLFNALTGLNQ-RVGNWPGVTVDKKTGRFRHDGEEYELVDLPGIYSLS 81

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTY 335
            + + E + R+++    A L++ + + ++               +  +      D     
Sbjct: 82  SLSQDEEVARSYILSGEAGLVVNIVDASNPDRNLYLTSRLLEMGVPVVVALNMVDSAEER 141

Query: 336 TEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
               D              + +  GEG+ EL   I    +      P S     R    L
Sbjct: 142 GISVDPARLSSLLGCPVIPMVASRGEGVAELKAAIAKGFTTGGASAPGSKV---RFPAEL 198

Query: 384 SQTVRYLEMASLN-EKDCGLD 403
            + +R +  ++ N  +  G D
Sbjct: 199 DEAIRRVAESTANHARAFGYD 219


>gi|254828658|ref|ZP_05233345.1| GTP-binding domain-containing protein [Listeria monocytogenes FSL
           N3-165]
 gi|258601060|gb|EEW14385.1| GTP-binding domain-containing protein [Listeria monocytogenes FSL
           N3-165]
          Length = 407

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 104/297 (35%), Gaps = 53/297 (17%)

Query: 82  EFHVHGGIA---VVNGILEELAKMPNLRLANPGEFSRRAFE-----------NGKIDLLE 127
           E H     A   V++ ++++L ++        G+ +  A             N ++   +
Sbjct: 27  ELHSLAKTANAEVMDELIQKLERVNQASFIGSGKLNELAALVEMHEADVVIFNSELSATQ 86

Query: 128 AESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKL-------THIRSFIE 173
             +++  + +      Q  L   +M      G+L   Y Q+   L         +     
Sbjct: 87  VRNISAAVEARIIDRTQLILDIFAMRAKSREGKLQVAYAQYKYLLPRLSGQGISLSKLGG 146

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG----YKIVILGHSN 229
                   E       + +   +  +K  + +H+ Q +   I R      ++  ++G++N
Sbjct: 147 GIGSRGPGESKLEMDKRHIREKMHDIKAQL-THVEQHRKRIIERRNTQSVFRFGLIGYTN 205

Query: 230 AGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           AGKS++FN L  +    +  +   +  TTR V        G+   ++DT G  +      
Sbjct: 206 AGKSTIFNRLTNETTLQENKLFATLDPTTRKVRF----SGGFQALLTDTVGFIQDLPTTL 261

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSD 330
               + T  E  N D+++ + + ++   +                ++  + I  K D
Sbjct: 262 IAAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLLKELEMNHLPTLVIYNKMD 318


>gi|17545940|ref|NP_519342.1| hypothetical protein RSc1221 [Ralstonia solanacearum GMI1000]
 gi|17428235|emb|CAD14923.1| putative gtpase protein [Ralstonia solanacearum GMI1000]
          Length = 417

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 29/203 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + +      L  ++     Q       R   + + + ++G++NAGKS+LFNAL K 
Sbjct: 165 ELDRRMLDERAKRLSAELDRLQRQHDTQRRARSRNDAFSVSLVGYTNAGKSTLFNALTKA 224

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
             A   +    T D  +  L LEG   V +SDT G             + T  E  +AD+
Sbjct: 225 -RAYAANQLFATLDTTSRRLYLEGLGNVVLSDTVGFIRDLPTQLVAAFRATLEETVHADV 283

Query: 302 ILLLKEINSKKEISFPKNIDF------------IFIGTKSDLYSTYTEEYD--------- 340
           +L + +  S  +    + +D             I +  K D       +           
Sbjct: 284 LLHVVDAASAVKHEQMEQVDRVLAEINASDIPQILVMNKIDAAEELRSQGPRIERDEAGA 343

Query: 341 ---HLISSFTGEGLEELINKIKS 360
                +S+  G GLE L   +  
Sbjct: 344 VRRVFVSALEGAGLELLREALVE 366


>gi|15611533|ref|NP_223184.1| GTP-binding protein Era [Helicobacter pylori J99]
 gi|10719990|sp|Q9ZLW0|ERA_HELPJ RecName: Full=GTPase Era
 gi|4154994|gb|AAD06035.1| GTP-binding protein [Helicobacter pylori J99]
          Length = 301

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 81/217 (37%), Gaps = 28/217 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQKYSSQFLALVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAENLR 410
                 + +R     +L      E D  +D   E  R
Sbjct: 188 MRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEER 224


>gi|317177645|dbj|BAJ55434.1| GTP-binding protein Era [Helicobacter pylori F16]
          Length = 301

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNARLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAKLCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQQYASQFLALVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR 388
                 + +R
Sbjct: 188 MRDIYKEIIR 197


>gi|313201423|ref|YP_004040081.1| GTP-binding proten hflx [Methylovorus sp. MP688]
 gi|312440739|gb|ADQ84845.1| GTP-binding proten HflX [Methylovorus sp. MP688]
          Length = 379

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 80/237 (33%), Gaps = 26/237 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W       R      +     E       + +   +  L+  ++  
Sbjct: 126 LAQLEHLSTRLVRGWTHL---ERQKGGIGVRGGPGETQLELDRRMLRIRVKQLREKLAKL 182

Query: 207 ISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
             Q  +    R       + ++G++NAGKS+LFN L +  V     +  T          
Sbjct: 183 KQQRGMQRRSRKRSLVMSVSLVGYTNAGKSTLFNRLTQSGVYAADQLFATLDTTSRKLYI 242

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSK 311
            +G  V +SDT G  +       E    T  E   ADL+L + +            +N  
Sbjct: 243 PDGGPVVLSDTVGFIKHLPHALVEAFGATLEEAVQADLLLHVVDAASPVRDDQIAQVNKV 302

Query: 312 KEISFPKNIDFIFIGTKSDLY--------STYTEEYDHLISSFTGEGLEELINKIKS 360
            E    +++  + +  + D            Y       IS+ TGEGLE +   ++ 
Sbjct: 303 LEEIGAEHVHQVLVLNQIDRAGLEPGLERDEYGRICRIRISAKTGEGLELVRQCLRE 359


>gi|227515337|ref|ZP_03945386.1| GTP-binding protein HflX [Lactobacillus fermentum ATCC 14931]
 gi|227086251|gb|EEI21563.1| GTP-binding protein HflX [Lactobacillus fermentum ATCC 14931]
          Length = 425

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 120/339 (35%), Gaps = 50/339 (14%)

Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178
           E  KI +++  +L   I ++    R         ++     Q   +L  + +     LD 
Sbjct: 93  EATKIRVIDRTALILEIFAQRAQSREA-------KIQVQIAQLQYRLPRLHTAANQSLDQ 145

Query: 179 -----------SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VI 224
                         E       + +   I  L+N++       +     R+   I    +
Sbjct: 146 QTGGGAGFANRGSGETQIEMDRRVIQKQIAHLRNELKEIAKSEETKRAKRDRDTIPTAAL 205

Query: 225 LGHSNAGKSSLFNALAKKDVAIVT--------DIPGTTRDVLTIDLDLEGYL-VKISDTA 275
           +G++NAGKS++ N L   +   V+        D+   T D     L L       +SDT 
Sbjct: 206 VGYTNAGKSTIMNQLV--ERFGVSSEKKVFEKDMLFATLDTSVRQLTLPDQKRFLLSDTV 263

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFI 323
           G          E  K T  E  +ADL++ + + +                    +NI  +
Sbjct: 264 GFVSKLPTHLIEAFKSTLAEAASADLLIQVIDYSDPHHEEMMATTDETLRQIGIENIPMV 323

Query: 324 FIGTKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           ++  K+D     + T   E   ++S+     ++ ++  I+  L   +++    +P    H
Sbjct: 324 YVFNKADKTEVSFPTMEGEDRVIVSAKQDSSIDLIVKVIRQHLFKDYQEATLLVPFADGH 383

Query: 380 -LYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSL 416
            + +L++    L+   L +     L+I  E+L      L
Sbjct: 384 VVSYLNEHTTILDTDYLPDGTKLRLEIAPEDLHRFQKYL 422


>gi|255283030|ref|ZP_05347585.1| ferrous iron transport protein B [Bryantella formatexigens DSM
           14469]
 gi|255266332|gb|EET59537.1| ferrous iron transport protein B [Bryantella formatexigens DSM
           14469]
          Length = 727

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 22/175 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL---EGYLVKISDTAG 276
            KI + G+ N GK+++FNAL   +   V + PG T +     +     +G  V ++D  G
Sbjct: 3   IKIALAGNPNCGKTTMFNALTGANQ-YVGNWPGVTVEKKEGKVKSKKAKGEDVVVTDLPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSD 330
           I        +E + R ++  EN D+I+ L +  + +             +  +     +D
Sbjct: 62  IYSLSPYTLEEVVSRDYVLNENPDVIIDLVDATNIERNLYLTTQLVETGVPVVIALNMAD 121

Query: 331 LYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           L      + D               S+    GL+ELI++   +   K  KLP  I
Sbjct: 122 LLEKRGIKIDTKRLSMLLGCTIVETSALKQTGLQELIDEAVKVAKKKETKLPGEI 176


>gi|163740177|ref|ZP_02147571.1| GTP-binding protein Era [Phaeobacter gallaeciensis 2.10]
 gi|161386035|gb|EDQ10410.1| GTP-binding protein Era [Phaeobacter gallaeciensis 2.10]
          Length = 301

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 24/172 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGESQIVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFP------KNIDFIFIG 326
           + +    +++  +   +    +AD+++L+ E    I    E          +        
Sbjct: 63  LFQPRRRLDRAMVAAAWGGAADADVVVLMVEAHRGITEGVERILEGLENIGEGRKIALAI 122

Query: 327 TKS-------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            K              DL   Y      +IS+  G G++ L   +   L   
Sbjct: 123 NKIDRVQSEVLLGLTKDLNERYAFADTFMISAEKGHGVDHLRGWLAEQLPEG 174


>gi|160891326|ref|ZP_02072329.1| hypothetical protein BACUNI_03775 [Bacteroides uniformis ATCC 8492]
 gi|317481193|ref|ZP_07940268.1| GTP-binding protein HflX [Bacteroides sp. 4_1_36]
 gi|156859547|gb|EDO52978.1| hypothetical protein BACUNI_03775 [Bacteroides uniformis ATCC 8492]
 gi|316902689|gb|EFV24568.1| GTP-binding protein HflX [Bacteroides sp. 4_1_36]
          Length = 418

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 20/200 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q       R    ++ ++G++N GKS+L   L+K +V
Sbjct: 181 EMDRRIILNRMSLLKERLAEIDKQKSTQRKNRGRLIRVALVGYTNVGKSTLMTLLSKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + +E     +SDT G          +  K T  EV  ADL+L 
Sbjct: 241 -FAENKLFATLDTTVRKVIIENLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLLH 299

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           + +I+    +++I                 I +  K D Y TY E+    ++  T E L 
Sbjct: 300 IVDISHPDFEEQIEVVNKTLADIGAAGKPMILVFNKIDAY-TYIEKAADDLTPRTKENL- 357

Query: 353 ELINKIKSILSNKFKKLPFS 372
                ++ ++     K+  +
Sbjct: 358 ----TLEELMKTWMAKMEDN 373


>gi|153954772|ref|YP_001395537.1| hypothetical protein CKL_2154 [Clostridium kluyveri DSM 555]
 gi|219855232|ref|YP_002472354.1| hypothetical protein CKR_1889 [Clostridium kluyveri NBRC 12016]
 gi|146347630|gb|EDK34166.1| Hypothetical protein CKL_2154 [Clostridium kluyveri DSM 555]
 gi|219568956|dbj|BAH06940.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 679

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I +LG  N+GKS+LFNAL       V + PG T +              I D  G     
Sbjct: 6   IALLGQPNSGKSTLFNALTGSHQ-HVGNWPGKTVEQKEGYFTYHNKKYTIVDLPGTYSLS 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTY 335
              E+E + R ++    A+L+ +L + +  +   F            + +    D+    
Sbjct: 65  ANSEEEIVTREYISSGKAELVCILADASQLQRSLFMLADYAGIKTPVVLLLNMMDIAQQQ 124

Query: 336 TEEYDHLISSF 346
            +  +    S 
Sbjct: 125 GKNINSAAISK 135


>gi|126179643|ref|YP_001047608.1| small GTP-binding protein [Methanoculleus marisnigri JR1]
 gi|125862437|gb|ABN57626.1| small GTP-binding protein [Methanoculleus marisnigri JR1]
          Length = 371

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 70/158 (44%), Gaps = 3/158 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +V++G  + GKS+L N L   D++       TT  V+   ++  G  +++ D  G+    
Sbjct: 66  VVLVGFPSVGKSTLLNRLTGDDISATAAYAFTTVSVIPGSMEHRGAKIQVLDIPGLIAGA 125

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK--EISFPKNIDFIFIGTKSDLYSTYTEEY 339
            + +  G +     V +ADLIL+L ++ ++K  ++   +  D      +     T  +  
Sbjct: 126 AMGKGRGKE-VIAVVRSADLILVLVDVFNEKHTDVLLRELHDAGIRINRPKPDITIKKAG 184

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +  I   T   ++  + +I+SIL+         +  ++
Sbjct: 185 NGGIRLNTVGAVDLDVEEIRSILAENKIVNADVLIRNE 222


>gi|27467902|ref|NP_764539.1| GTP-binding protein proteinase modulator YnbA [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866834|ref|YP_188455.1| GTP-binding protein [Staphylococcus epidermidis RP62A]
 gi|251810737|ref|ZP_04825210.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|27315447|gb|AAO04581.1|AE016747_78 GTP-binding protein proteinase modulator YnbA [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637492|gb|AAW54280.1| GTP-binding protein, putative [Staphylococcus epidermidis RP62A]
 gi|251805897|gb|EES58554.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
          Length = 416

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 81/211 (38%), Gaps = 16/211 (7%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + +     ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 124 LRARSREGKLQVELAQLD-YLLPRLHGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 182

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        ++I ++G++NAGKSS FN LA ++     +I   
Sbjct: 183 NEIKHQLKTVVDHRERYRNKREQNQVFQIALVGYTNAGKSSWFNVLANEE-TYEKNILFA 241

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T  + + EG+ + ISDT G  +          K T  E + AD+++ + + +  +
Sbjct: 242 TLDPKTRQIQVNEGFNLIISDTVGFIQKLPTTLVAAFKSTLEEAKGADVLMHVVDASHSE 301

Query: 313 ------------EISFPKNIDFIFIGTKSDL 331
                             +I  + I  K DL
Sbjct: 302 YRTQIDTVNQIINDLDMDHIPQVVIFNKKDL 332


>gi|270294568|ref|ZP_06200770.1| GTP-binding protein HflX [Bacteroides sp. D20]
 gi|270276035|gb|EFA21895.1| GTP-binding protein HflX [Bacteroides sp. D20]
          Length = 418

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 20/200 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDV 244
               + +LN +  LK  ++    Q       R    ++ ++G++N GKS+L   L+K +V
Sbjct: 181 EMDRRIILNRMSLLKERLAEIDKQKSTQRKNRGRLIRVALVGYTNVGKSTLMTLLSKSEV 240

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
               +    T D     + +E     +SDT G          +  K T  EV  ADL+L 
Sbjct: 241 -FAENKLFATLDTTVRKVIIENLPFLLSDTVGFIRKLPTDLVDSFKSTLDEVREADLLLH 299

Query: 305 LKEINS---KKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
           + +I+    +++I                 I +  K D Y TY E+    ++  T E L 
Sbjct: 300 IVDISHPDFEEQIEVVNKTLADIGAAGKPMILVFNKIDAY-TYIEKAADDLTPRTKENL- 357

Query: 353 ELINKIKSILSNKFKKLPFS 372
                ++ ++     K+  +
Sbjct: 358 ----TLEELMKTWMAKMEDN 373


>gi|253999400|ref|YP_003051463.1| GTP-binding proten HflX [Methylovorus sp. SIP3-4]
 gi|253986079|gb|ACT50936.1| GTP-binding proten HflX [Methylovorus sp. SIP3-4]
          Length = 379

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 80/237 (33%), Gaps = 26/237 (10%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W       R      +     E       + +   +  L+  ++  
Sbjct: 126 LAQLEHLSTRLVRGWTHL---ERQKGGIGVRGGPGETQLELDRRMLRIRVKQLREKLAKL 182

Query: 207 ISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
             Q  +    R       + ++G++NAGKS+LFN L +  V     +  T          
Sbjct: 183 KQQRGMQRRSRKRSLVMSVSLVGYTNAGKSTLFNRLTQSGVYAADQLFATLDTTSRKLYI 242

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSK 311
            +G  V +SDT G  +       E    T  E   ADL+L + +            +N  
Sbjct: 243 PDGGPVVLSDTVGFIKHLPHALVEAFGATLEEAVQADLLLHVVDAASPVRDDQIAQVNKV 302

Query: 312 KEISFPKNIDFIFIGTKSDLY--------STYTEEYDHLISSFTGEGLEELINKIKS 360
            E    +++  + +  + D            Y       IS+ TGEGLE +   ++ 
Sbjct: 303 LEEIGAEHVHQVLVLNQIDRAGLEPGLERDEYGRICRIRISAKTGEGLELVRQCLRE 359


>gi|157368679|ref|YP_001476668.1| putative GTPase HflX [Serratia proteamaculans 568]
 gi|157320443|gb|ABV39540.1| GTP-binding protein HSR1-related [Serratia proteamaculans 568]
          Length = 426

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 114/354 (32%), Gaps = 50/354 (14%)

Query: 70  PSPESFTGEDSAE-----FHVHGGIAVV-NGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           P P+ F GE  AE         G   V+ +  L    +    RL                
Sbjct: 52  PHPKYFVGEGKAEEIADAVKASGASVVLFDHSLSAAQERNLERLCE-------------C 98

Query: 124 DLLEAESLADLISSETEMQR----RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            +++   L   I ++         ++ +  +    + L   W   L   +  I       
Sbjct: 99  RVIDRTGLILDIFAQRARTHEGKLQVELAQLRHIATRLVRGWTH-LERQKGGIGLRGPGE 157

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            + +      ++ ++ IL     ++    QG+          + ++G++NAGKS+LFN +
Sbjct: 158 TQLETDRRLLRDRISLILRRLERVAKQREQGRRARTRAEVPTVSLVGYTNAGKSTLFNRI 217

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
              DV    D    T D     +D+       ++DT G             K T  E   
Sbjct: 218 TSADV-YAADQLFATLDPTLRRIDVADVGDTVLADTVGFIRHLPHDLVAAFKATLQETRQ 276

Query: 299 ADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYD------ 340
           A L+L + +    +     +             I  + +  K D+   +    D      
Sbjct: 277 ASLLLHVIDAADTRVDENIEAVNTVLAEIESDEIPTLLVMNKIDMLDDFVPRIDRNDENL 336

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
                +S+ +GEG+  L   +   LS +       +P      R  ++  Q + 
Sbjct: 337 PIRVWLSAASGEGIPLLYQALTERLSGEIAHYELRLPPEAGRLRSRFYQLQAIE 390


>gi|291484291|dbj|BAI85366.1| hypothetical protein BSNT_02799 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 460

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 68/338 (20%), Positives = 122/338 (36%), Gaps = 43/338 (12%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSM-------EGMSGELSSLYGQWIDKL------- 165
           N ++   + +SLA  I  +   + +L +           G+L     Q    L       
Sbjct: 124 NDELSPSQLKSLATAIEVKMIDRTQLILDIFAKRARTREGKLQIELAQLQYALPRLTGQG 183

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII--RNG-YKI 222
            ++             E       + + N I  +   +S+ I           +NG  +I
Sbjct: 184 INLSRQGGGIGARGPGETKLETDRRHIRNRIHEINTQLSTVIRHRSRYRERRKKNGVLQI 243

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+ FN L   D +   D+   T D +T  + L  GY V +SDT G  +  
Sbjct: 244 ALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLSDTVGFIQDL 302

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTKS 329
                   + T  EV+ ADLIL L + +++             E     +I  +    K 
Sbjct: 303 PTTLIAAFRSTLEEVKEADLILHLIDSSNEDYAGHEKTVLRLLEELEADDIPMLTAYNKR 362

Query: 330 D--LYSTYTEE-YDHLISSFTGE-GLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLS 384
           D  L         DH++ S   E         I+  L  +        +P+ +  L    
Sbjct: 363 DQKLPDFIPSAGRDHIMVSAKFEDDAAAFKEAIQRYLRQELLTSFEAHVPASEGKLLSRI 422

Query: 385 QTVRYLEMASLNEKDCGLDI---IAENLRLASVSLGKI 419
           ++   ++    NE++   DI   + E        +G++
Sbjct: 423 KSETMVDRFYFNEENEQYDISGYVQEE----QSIIGEL 456


>gi|238795254|ref|ZP_04638837.1| GTP-binding protein hflX [Yersinia intermedia ATCC 29909]
 gi|238725422|gb|EEQ16993.1| GTP-binding protein hflX [Yersinia intermedia ATCC 29909]
          Length = 427

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 112/354 (31%), Gaps = 50/354 (14%)

Query: 70  PSPESFTGEDSAE-----FHVHGGIAVV-NGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           P P+ F GE  AE         G   V+ +  L    +    RL                
Sbjct: 52  PHPKYFVGEGKAEEIADAVKASGASVVLFDHALSAAQERNLERLCE-------------C 98

Query: 124 DLLEAESLADLISSETEMQR----RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            +++   L   I ++         ++ +  +    + L   W   L   +  I       
Sbjct: 99  RVIDRTGLILDIFAQRARTHEGKLQVELAQLRHIATRLVRGWTH-LERQKGGIGLRGPGE 157

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            + +      ++ ++ IL     ++    QG+          + ++G++NAGKSSLFN +
Sbjct: 158 TQLETDRRLLRDRISLILSRLERVAKQREQGRRARTRAEIPTVSLVGYTNAGKSSLFNKI 217

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
              DV     +  T    L      +     ++DT G             K T  E   A
Sbjct: 218 TAADVYAADKLFATLDPTLRRISVADVGDTVLADTVGFIRHLPHDLVAAFKATLQETRQA 277

Query: 300 DLILLLKEINSKK-------------EISFPKNIDFIFIGTKSDLYSTYTEEYD------ 340
            L+L + +    +             EI     I  + +  K DL   +    D      
Sbjct: 278 SLLLHIIDAADPRVTENIAAVNSVLAEIE-ADEIPTLLVMNKIDLLDDFVPRIDRNEDNL 336

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
                +S+ TG G+  L   +   LS +       +P      R  ++  Q + 
Sbjct: 337 PVRVWLSAQTGAGIPLLFQALTERLSGEIAHFELRLPPQAGRLRSRFYQLQAIE 390


>gi|186684896|ref|YP_001868092.1| GTP-binding protein, HSR1-related [Nostoc punctiforme PCC 73102]
 gi|186467348|gb|ACC83149.1| GTP-binding protein, HSR1-related [Nostoc punctiforme PCC 73102]
          Length = 530

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 86/204 (42%), Gaps = 24/204 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           + +  +  + ++ +      + +H S+ +     R    + ++G++NAGKS+L NAL   
Sbjct: 320 ETERRAIGQRISRLQKEVTQLQAHRSRLRQRRQHREVPSVALVGYTNAGKSTLLNALTNA 379

Query: 243 DVA----IVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +V     +   +  TTR ++    +   +  + I+DT G          +  + T  EV 
Sbjct: 380 EVYTADQLFATLDPTTRRLVIPYGETNEHQEILITDTVGFIHELPASLMDAFRATLEEVT 439

Query: 298 NADLILLLKEINSKKEISFPKNI------------DFIFIGTKSDLYSTYT-----EEYD 340
            AD +L L +++    +   +++              + I  K D  ++ T     EE+ 
Sbjct: 440 EADALLHLVDLSHPAWLRHIRSVREILAQMPITPGPALVIFNKIDQANSETLALAREEFP 499

Query: 341 --HLISSFTGEGLEELINKIKSIL 362
               IS+    GLE L +++  ++
Sbjct: 500 LAVFISASQRLGLETLRHRLAQLI 523


>gi|288929458|ref|ZP_06423303.1| ferrous iron transport protein B [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288329560|gb|EFC68146.1| ferrous iron transport protein B [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 717

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 74/195 (37%), Gaps = 24/195 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
             Y + + G+ N GKS++FNAL         + PG T          +G   +I D  G 
Sbjct: 31  ERYVVALAGNPNTGKSTVFNALTGLKQ-HTGNWPGKTVGKAEGYFAYQGEGYRIVDLPGT 89

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------EISFPKNIDFIFI-- 325
                  E E I R F+     D+ +++ +    +          +I+    +    +  
Sbjct: 90  YSLSSTSEDEEIARDFILFGQPDVTVMVADATRLERNMNLILQVLQITDKAVLCVNLLDE 149

Query: 326 --GTKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK---KLPFSIPSH 376
               K D+     S          S+ +G+G+++L+ +++ +   ++K       ++P H
Sbjct: 150 AKRNKIDINLNALSRRLGIPVVGASARSGQGIDQLLERMRQVAEGEYKCRPHRSTNLPPH 209

Query: 377 KRHLYHLSQTVRYLE 391
                H+ +  R + 
Sbjct: 210 --AAQHVKELARKIA 222


>gi|167470109|ref|ZP_02334813.1| GTP-binding protein HflX [Yersinia pestis FV-1]
          Length = 435

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 113/354 (31%), Gaps = 50/354 (14%)

Query: 70  PSPESFTGEDSAE-----FHVHGGIAVV-NGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           P P+ F GE  AE         G   V+ +  L    +    RL                
Sbjct: 59  PHPKYFVGEGKAEEIADAVKASGASVVLFDHALSAAQERNLERLCQ-------------C 105

Query: 124 DLLEAESLADLISSETEMQR----RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            +++   L   I ++         ++ +  +    + L   W   L   +  I       
Sbjct: 106 RVIDRTGLILDIFAQRARTHEGKLQVELAQLRHIATRLVRGWTH-LERQKGGIGLRGPGE 164

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            + +      ++ ++ IL     ++    QG+      +   + ++G++NAGKSSLFN +
Sbjct: 165 TQLETDRRLLRDRISLILSRLERVAKQREQGRRARTRADIPTVSLVGYTNAGKSSLFNKI 224

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
              DV    D    T D     +++       ++DT G             K T  E   
Sbjct: 225 TAADV-YAADQLFATLDPTLRRINVADVGDTVLADTVGFIRHLPHDLVAAFKATLQETRQ 283

Query: 299 ADLILLLKEINSKKEIS------------FPKNIDFIFIGTKSDLYSTYTEEYD------ 340
           A L+L + +    +                   I  + +  K DL   +    D      
Sbjct: 284 ASLLLHIIDAADPRVAENMAAVDTVLAEIEADEIPTLLVMNKIDLLDDFVPRIDRNEDNL 343

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
                +S+ TG G+  L   +   LS +       +P      R  ++  Q + 
Sbjct: 344 PVRVWLSAQTGAGIPLLFQALTERLSGEIAHFELRLPPQAGRLRSRFYQLQAIE 397


>gi|170727462|ref|YP_001761488.1| ferrous iron transport protein B [Shewanella woodyi ATCC 51908]
 gi|169812809|gb|ACA87393.1| ferrous iron transport protein B [Shewanella woodyi ATCC 51908]
          Length = 764

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 25/178 (14%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +  V +G+ NAGKS+LFNAL   +   V +  G T +  T    L G  V ++D  GI +
Sbjct: 5   FHCVTVGNPNAGKSTLFNALTGANQQ-VGNWSGVTVEKKTGLFTLNGADVYLTDLPGIYD 63

Query: 280 ------TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGT 327
                 + D    E I + +L  +  D I+ L +  + +             I  + +  
Sbjct: 64  LLPAGSSCDCSLDEQIAQQYLAEQQVDGIINLVDATNIERHLYLTVQLRELGIPMVVVLN 123

Query: 328 KSDLYSTYTEEYDHLISSFT-----------GEG-LEELINKIKSILSNKFKKLPFSI 373
           K D    +  E +    S T            EG +E++  ++  +L  K  + P  +
Sbjct: 124 KIDAAKKHGIEINTAKMSETLGCPVVSVCSRDEGDIEKVKEQVVDLLDGKVSEAPLVL 181


>gi|293366730|ref|ZP_06613406.1| GTP-binding protein HflX [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319031|gb|EFE59401.1| GTP-binding protein HflX [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 416

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 81/211 (38%), Gaps = 16/211 (7%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + +     ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 124 LRARSREGKLQVELAQLD-YLLPRLHGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 182

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        ++I ++G++NAGKSS FN LA ++     +I   
Sbjct: 183 NEIKHQLKTVVDHRERYRNKREQNQVFQIALVGYTNAGKSSWFNVLANEE-TYEKNILFA 241

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T  + + EG+ + ISDT G  +          K T  E + AD+++ + + +  +
Sbjct: 242 TLDPKTRQIQVNEGFNLIISDTVGFIQKLPTTLVAAFKSTLEEAKGADVLMHVVDASHSE 301

Query: 313 ------------EISFPKNIDFIFIGTKSDL 331
                             +I  + I  K DL
Sbjct: 302 YRTQIDTVNQIINDLDMDHIPQVVIFNKKDL 332


>gi|229815801|ref|ZP_04446126.1| hypothetical protein COLINT_02850 [Collinsella intestinalis DSM
           13280]
 gi|229808717|gb|EEP44494.1| hypothetical protein COLINT_02850 [Collinsella intestinalis DSM
           13280]
          Length = 786

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 73/226 (32%), Gaps = 22/226 (9%)

Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL--NDILFLKNDISSHISQGKLGEIIR 217
           +  D    +R    A ++  +  D  N   +             +       G+      
Sbjct: 54  RLRDYELTLRLADAARIELVDVHDAHNAPRENPAPAASEHPAIGECVCRPRAGRQCAPAD 113

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
              +  + G+ N GK++LFN L   +   V + PG T D     + L    V I+D  GI
Sbjct: 114 EPLRFALAGNQNCGKTTLFNQLTGSNQ-HVGNFPGVTVDRKDGRI-LGHDNVTITDLPGI 171

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL 331
                   +E + R F+  E  D I+ + +  + +            +   +      D 
Sbjct: 172 YSLSPYTSEEVVSRRFILEEEPDAIINIVDATNIERNLYLTLQLMELDRPMVLALNMMDE 231

Query: 332 YSTYTEEYDHLI------------SSFTGEGLEELINKIKSILSNK 365
            +      D               S+  GEG+ EL+     +  ++
Sbjct: 232 VAANGGTIDVNRLEGMLGIPVVPISAAKGEGISELVEHALHVARHR 277


>gi|254168553|ref|ZP_04875397.1| ferrous iron transport protein B [Aciduliprofundum boonei T469]
 gi|197622608|gb|EDY35179.1| ferrous iron transport protein B [Aciduliprofundum boonei T469]
          Length = 665

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 85/240 (35%), Gaps = 44/240 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ N GKSSLFNA+      I  + PG T +     +  EG  + I D  G   
Sbjct: 1   MLIALAGNPNTGKSSLFNAITGAHQHI-GNWPGVTVEKKEGIITFEGKKITIVDLPGTYS 59

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDLY 332
                 +E I R F+  E  D+++ + +  + +       E+    +   I +    +  
Sbjct: 60  LTAYSLEEVITRNFILEEEPDVVVDVIDATNLERNLYLLTELMELTDRIVIALNMFDEAK 119

Query: 333 STYTEEYDHLI----------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSH-KRHLY 381
             Y  +   +            +   +G++EL   + + L   F    F  P   +  + 
Sbjct: 120 RKYKLDVKKMKELLGIPVIPTVAIKNKGVKEL---LHACLHGDFTPKKFYYPEDVENRIE 176

Query: 382 HLSQTVRYL-------EMASLNEKDCGL----------DII--AENLRLASVSLGKITGC 422
            L + +  L           L E D  +          DI+  AE+LR     +  I G 
Sbjct: 177 KLQEMMEKLNLKNKRWHAIKLIENDSEVRKKFANLGRKDILHEAEHLR---HEIEDIYGD 233


>gi|86157990|ref|YP_464775.1| small GTP-binding protein domain-containing protein
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774501|gb|ABC81338.1| small GTP-binding protein domain protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 688

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 1/105 (0%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           + H +     +++     ++++G+ N GKS LF AL  K V  V++ PGTT +V      
Sbjct: 10  ARHQADLDRKQVVAAARSVILVGNPNVGKSVLFGALTGKYVT-VSNYPGTTVEVTRGSAT 68

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           +EG    + DT G      + E E + R  L VE   + L + + 
Sbjct: 69  IEGRPWHVMDTPGTNNLLPMSEDEQVTRDILLVERDYVCLQVCDA 113


>gi|47094277|ref|ZP_00231984.1| GTP-binding domain protein [Listeria monocytogenes str. 4b H7858]
 gi|254993379|ref|ZP_05275569.1| GTP-binding domain-containing protein [Listeria monocytogenes FSL
           J2-064]
 gi|258611760|ref|ZP_05242000.2| GTP-binding domain-containing protein [Listeria monocytogenes FSL
           R2-503]
 gi|293596244|ref|ZP_05229645.2| GTP-binding domain-containing protein [Listeria monocytogenes FSL
           J1-194]
 gi|293596932|ref|ZP_05265747.2| GTP-binding domain-containing protein [Listeria monocytogenes
           HPB2262]
 gi|300765332|ref|ZP_07075316.1| GTP-binding domain-containing protein [Listeria monocytogenes FSL
           N1-017]
 gi|47017352|gb|EAL08178.1| GTP-binding domain protein [Listeria monocytogenes str. 4b H7858]
 gi|258605968|gb|EEW18576.1| GTP-binding domain-containing protein [Listeria monocytogenes FSL
           R2-503]
 gi|293583944|gb|EFF95976.1| GTP-binding domain-containing protein [Listeria monocytogenes
           HPB2262]
 gi|293593882|gb|EFG01643.1| GTP-binding domain-containing protein [Listeria monocytogenes FSL
           J1-194]
 gi|300514015|gb|EFK41078.1| GTP-binding domain-containing protein [Listeria monocytogenes FSL
           N1-017]
 gi|328468583|gb|EGF39583.1| GTP-binding domain-containing protein [Listeria monocytogenes 1816]
 gi|332311740|gb|EGJ24835.1| GTP-binding protein HflX [Listeria monocytogenes str. Scott A]
          Length = 409

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 101/296 (34%), Gaps = 51/296 (17%)

Query: 82  EFHVHGGIA---VVNGILEELAKMPNLRLANPGEFSRRAFE-----------NGKIDLLE 127
           E H     A   VV+ ++++L ++        G+    A             N ++   +
Sbjct: 29  ELHSLAKTANGEVVDELIQKLERVNQASFIGSGKLEELATLVEMHEADVVIFNSELSATQ 88

Query: 128 AESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKL-------THIRSFIE 173
             +++  + +      Q  L   +M      G+L   Y Q+   L         +     
Sbjct: 89  VRNISKAVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQGVSLSKLGG 148

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDI---SSHISQGKLGEIIRNGYKIVILGHSNA 230
                   E       + +   +  +K  +     H  +      I++ ++  ++G++NA
Sbjct: 149 GIGSRGPGESKLEMDKRHIREKMHDIKAQLTHVEQHRKRIIERRNIQSVFRFGLIGYTNA 208

Query: 231 GKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
           GKS++FN L  +    +  +   +  TTR +        G+   ++DT G  +       
Sbjct: 209 GKSTIFNRLTNETTLQEDKLFATLDPTTRKIRF----SGGFQALLTDTVGFIQDLPTTLI 264

Query: 287 EGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSD 330
              + T  E  N D+++ + + ++   +                ++  + I  K D
Sbjct: 265 AAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMD 320


>gi|164686728|ref|ZP_02210756.1| hypothetical protein CLOBAR_00323 [Clostridium bartlettii DSM
           16795]
 gi|164604118|gb|EDQ97583.1| hypothetical protein CLOBAR_00323 [Clostridium bartlettii DSM
           16795]
          Length = 637

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 22/170 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ N GK+++FN L   +   V + PG T +     L+ +   +KI D  GI  
Sbjct: 2   INIALFGNPNVGKTTVFNLLTGSNQ-YVGNWPGVTIEKKEGYLNED---IKIVDLPGIYA 57

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYS 333
            D    +E + ++FLE E+ D+IL + + ++     +        N   I +    DL  
Sbjct: 58  MDTFSNEEKVSKSFLENEDVDVILNIVDASNLSRNLYLTTQLMKYNKPIILLLNMLDLAE 117

Query: 334 TYTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +   + D+             I +    G E L   I++ ++ K   +  
Sbjct: 118 SKGIQIDYDKLANELGIQIVPIIAKKKSGTENLEEIIRNSVNLKPNYIED 167


>gi|269103606|ref|ZP_06156303.1| GTP-binding protein HflX [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163504|gb|EEZ42000.1| GTP-binding protein HflX [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 429

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/305 (17%), Positives = 98/305 (32%), Gaps = 42/305 (13%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + +  
Sbjct: 114 RARTHEGKLQVELAQLRHLSTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRE 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   +     Q + G   RN      I ++G++NAGKS+LFN +    V    D  
Sbjct: 170 RIKAILRRLDKVAKQREQGRRARNRAEIPTISLVGYTNAGKSTLFNRITDAGV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     +++       ++DT G             K T  E + ADL+L + + + 
Sbjct: 229 FATLDPTLRKVEVADVGTAILADTVGFIRHLPHDLVAAFKATLKETQEADLLLHVVDASD 288

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGE 349
            +            E      +  + +  K D         +           +S+  G 
Sbjct: 289 DRFRENIDAVESVLEEIEAHEVPSLLVMNKIDNLEGAKPRIERDDDGVPRRVWVSAMEGI 348

Query: 350 GLEELINKIKSILSN----KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
           GL+ L   +   LS        +LP  +    R  ++    +   E  S          +
Sbjct: 349 GLDLLFQALTERLSGTMVKHTLRLPPELIGRYRSKFYQLGCILREEYESDG-------CL 401

Query: 406 AENLR 410
             ++R
Sbjct: 402 TIDIR 406


>gi|168212403|ref|ZP_02638028.1| ferrous iron transport protein B [Clostridium perfringens CPE str.
           F4969]
 gi|170715960|gb|EDT28142.1| ferrous iron transport protein B [Clostridium perfringens CPE str.
           F4969]
          Length = 707

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 19/172 (11%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           S +S+ K     +  Y + + G+ N GKS++FNAL   +     + PG T        + 
Sbjct: 11  SLLSKDKSKGNTKEDYVVALAGNPNVGKSTVFNALTGLNQ-HTGNWPGKTVAKAEGYYEF 69

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------EI 314
           +   +KI D  G        E+E I R ++   + D+++++ +  S +          EI
Sbjct: 70  KDSTIKIVDLPGTYSLLSNSEEEEIARDYICFNDPDIVVVVADATSLERNLNLFIQISEI 129

Query: 315 SFPKNIDFIF--------IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           +    +            I    DL S          S+  G G+EEL   I
Sbjct: 130 TEKAILCVNLTDEAEKNNIKIDLDLLSKELNSTIVSSSARNGVGIEELKEAI 181


>gi|297588577|ref|ZP_06947220.1| GTP-binding protein HflX [Finegoldia magna ATCC 53516]
 gi|297573950|gb|EFH92671.1| GTP-binding protein HflX [Finegoldia magna ATCC 53516]
          Length = 472

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 97/257 (37%), Gaps = 27/257 (10%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T+    ++ +      L  L G + D L+     I        + +V   + ++ ++
Sbjct: 163 RAKTKQSVLQVELAEYKYRLPRLIG-FRDHLSRTGGGIGTRGPGETKLEVDRRTIQKKID 221

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVT 248
           ++      I       +   +  +   + ++G++NAGKS+L N L         +     
Sbjct: 222 NVKRELKSIDKSQENMRKQRLKSDIKMVSMVGYTNAGKSTLSNKLVNFYKDKYTEEFETE 281

Query: 249 DIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           D+   T D       L       + DT G  +       E  K T L+++++DLIL + +
Sbjct: 282 DLLFKTLDTTLRKCTLPNKKQCLVIDTVGFIKDIPTDLIEAFKSTLLDLKHSDLILFILD 341

Query: 308 INSK-------------KEISFPKNIDFIFIGTKSD----LYSTYTEEYDHLISSFTGEG 350
            +S              KE+          +  KSD    +   Y  E    IS+F  E 
Sbjct: 342 SSSSDLDNQITTTMDILKELKVLDKPMVT-VFNKSDKNPNVIFPYNLENKVKISAFNDED 400

Query: 351 LEELINKIKSILSNKFK 367
           +E L+ KI+  L   +K
Sbjct: 401 IEMLLYKIQEELYGNYK 417


>gi|237730251|ref|ZP_04560732.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226905790|gb|EEH91708.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 287

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + AGKSSL NAL   +V+ V+DI   TR+ L   L +    + + D  G+ E+ 
Sbjct: 39  IGIMGKTGAGKSSLCNALFGGEVSPVSDITACTREPLRFHLQVGKRYMTLVDLPGVGES- 97

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
           +  + E +     ++   DL+L L + + +  ++  ++     IG
Sbjct: 98  NTRDAEYVALYRKQLPQLDLVLWLIKGDDRA-LAVDEHFYRQVIG 141


>gi|241662761|ref|YP_002981121.1| GTP-binding proten HflX [Ralstonia pickettii 12D]
 gi|240864788|gb|ACS62449.1| GTP-binding proten HflX [Ralstonia pickettii 12D]
          Length = 417

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 29/203 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + +      L +++     Q       R   + + + ++G++NAGKS+LFNAL K 
Sbjct: 165 ELDRRMLDERAKRLSSELDKLQRQHDTQRRARSRNDAFSVSLVGYTNAGKSTLFNALTKA 224

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
             A   +    T D  +  L LEG   V +SDT G             + T  E  +AD+
Sbjct: 225 -RAYAANQLFATLDTTSRRLYLEGLGNVVLSDTVGFIRDLPTQLVAAFRATLEETVHADV 283

Query: 302 ILLLKE------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD--------- 340
           +L + +            ++   +      I  I +  K D                   
Sbjct: 284 LLHVVDAASTVKHEQMEQVDRVLDEIDASGIPQILVMNKIDAAEELRVAGPRIERDETGA 343

Query: 341 ---HLISSFTGEGLEELINKIKS 360
                +S+  G GL+ L   +  
Sbjct: 344 VRRVFVSAIEGTGLDLLREALVE 366


>gi|213583633|ref|ZP_03365459.1| putative GTPase HflX [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 274

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 79/224 (35%), Gaps = 26/224 (11%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
           +  +  I      +     QG+   I  +   + ++G++NAGKS+LFN +  +      D
Sbjct: 16  RNRIVQIQSRLEKVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNQIT-EARVYAAD 74

Query: 250 IPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE- 307
               T D     +D+       ++DT G             K T  E   A L+L + + 
Sbjct: 75  QLFATLDPTLRRIDVADVGETVLADTVGFIRHLPYDLVAAFKATLQETRQATLLLHVVDA 134

Query: 308 -----------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFT 347
                      +N+  E      I  + +  K D+   +    D           +S+ +
Sbjct: 135 ADVRVQENIEAVNTVLEEIDAHEIPTLMVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQS 194

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
           G G+ +L   +   LS +  +    +   +   R  ++  Q + 
Sbjct: 195 GVGIPQLFQALTERLSGEVAQHTLRLLPQEGRLRSRFYQLQAIE 238


>gi|99082398|ref|YP_614552.1| GTP-binding protein Era [Ruegeria sp. TM1040]
 gi|99038678|gb|ABF65290.1| GTP-binding protein Era [Ruegeria sp. TM1040]
          Length = 301

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 24/172 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQLVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEI-----SFPKNIDFIFIG 326
           + +    +++  +   +    +AD+I++L E         + I        +        
Sbjct: 63  LFQPRRRLDRAMVAAAWGGAADADVIVMLIEAHRGVTEGVERILENLGEVAEGRRVALAI 122

Query: 327 TKS-------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
            K              DL   +      +IS+  G G E+L   + + +   
Sbjct: 123 NKIDKVQSDVLLGLTKDLNDRFPFAETFMISAEKGYGTEDLRQWLAAEVPEG 174


>gi|282876262|ref|ZP_06285129.1| GTP-binding protein HflX [Staphylococcus epidermidis SK135]
 gi|281295287|gb|EFA87814.1| GTP-binding protein HflX [Staphylococcus epidermidis SK135]
 gi|329736194|gb|EGG72466.1| GTP-binding protein HflX [Staphylococcus epidermidis VCU028]
          Length = 413

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 81/211 (38%), Gaps = 16/211 (7%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + +     ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSREGKLQVELAQLD-YLLPRLHGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        ++I ++G++NAGKSS FN LA ++     +I   
Sbjct: 180 NEIKHQLKTVVDHRERYRNKREQNQVFQIALVGYTNAGKSSWFNVLANEE-TYEKNILFA 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T  + + EG+ + ISDT G  +          K T  E + AD+++ + + +  +
Sbjct: 239 TLDPKTRQIQVNEGFNLIISDTVGFIQKLPTTLVAAFKSTLEEAKGADVLMHVVDASHSE 298

Query: 313 ------------EISFPKNIDFIFIGTKSDL 331
                             +I  + I  K DL
Sbjct: 299 YRTQIDTVNQIINDLDMDHIPQVVIFNKKDL 329


>gi|195023632|ref|XP_001985722.1| GH20928 [Drosophila grimshawi]
 gi|193901722|gb|EDW00589.1| GH20928 [Drosophila grimshawi]
          Length = 381

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 15/138 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            Q    +  +    I ++G  N GKS+  N +    V   +    TTR   T  L     
Sbjct: 54  DQNNNKKSQQRALHIAVIGVPNVGKSTFINNIINHKVCPTSAKVHTTRKANTAILTSGQT 113

Query: 268 LVKISDTAGI---RETDDIVEKEGIKRTFL-EVENADLILLLKEINSK-----------K 312
            +   DT G+   RE      ++  K  +   +++AD+I ++++ ++             
Sbjct: 114 QLVFYDTPGLVTQREIRKHHLEQSFKSAYRHAIQHADIIAVMQDASNSWTRKELHPTVLD 173

Query: 313 EISFPKNIDFIFIGTKSD 330
            +     +    I  K D
Sbjct: 174 TLKAYAQLPSFLILNKID 191


>gi|226223898|ref|YP_002758005.1| GTP-binding protein [Listeria monocytogenes Clip81459]
 gi|225876360|emb|CAS05069.1| Putative GTP-binding protein [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
          Length = 407

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 101/296 (34%), Gaps = 51/296 (17%)

Query: 82  EFHVHGGIA---VVNGILEELAKMPNLRLANPGEFSRRAFE-----------NGKIDLLE 127
           E H     A   VV+ ++++L ++        G+    A             N ++   +
Sbjct: 27  ELHSLAKTANGEVVDELIQKLERVNQASFIGSGKLEELATLVEMHEADVVIFNSELSATQ 86

Query: 128 AESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKL-------THIRSFIE 173
             +++  + +      Q  L   +M      G+L   Y Q+   L         +     
Sbjct: 87  VRNISKAVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQGVSLSKLGG 146

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDI---SSHISQGKLGEIIRNGYKIVILGHSNA 230
                   E       + +   +  +K  +     H  +      I++ ++  ++G++NA
Sbjct: 147 GIGSRGPGESKLEMDKRHIREKMHDIKAQLTHVEQHRKRIIERRNIQSVFRFGLIGYTNA 206

Query: 231 GKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286
           GKS++FN L  +    +  +   +  TTR +        G+   ++DT G  +       
Sbjct: 207 GKSTIFNRLTNETTLQEDKLFATLDPTTRKIRF----SGGFQALLTDTVGFIQDLPTTLI 262

Query: 287 EGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSD 330
              + T  E  N D+++ + + ++   +                ++  + I  K D
Sbjct: 263 AAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMD 318


>gi|156937792|ref|YP_001435588.1| small GTP-binding protein [Ignicoccus hospitalis KIN4/I]
 gi|156566776|gb|ABU82181.1| small GTP-binding protein [Ignicoccus hospitalis KIN4/I]
          Length = 671

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 18/159 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y I ++G  N GKS+  N L  K V+ V + PG T D+  I ++ +G  V I D  G+  
Sbjct: 3   YSIAVVGQPNVGKSTFINVLIGKYVSEVANWPGVTVDIKIIKIEYDGKEVCIYDFPGMYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSD--- 330
            +   E+E I       E+ D  + + +  S K        S       +   +K+D   
Sbjct: 63  LNPTSEEERIAAERFVTEDFDNHIAIADSTSLKRTLYLVVQSLELKGKGVVALSKTDAAL 122

Query: 331 ---------LYSTYTEEYDHLISSFTGEGLEELINKIKS 360
                    L            SS+T EG+EE++ K   
Sbjct: 123 KAGIHINVGLLEKKLGFPVIPFSSYTLEGVEEVLEKALE 161


>gi|304407184|ref|ZP_07388837.1| GTP-binding proten HflX [Paenibacillus curdlanolyticus YK9]
 gi|304343625|gb|EFM09466.1| GTP-binding proten HflX [Paenibacillus curdlanolyticus YK9]
          Length = 425

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 103/277 (37%), Gaps = 28/277 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E Q ++ +  +   L  L G   + L             + E  ++    + +  
Sbjct: 112 RARTREAQLQVEVAQLQYMLPRLVG-LRESLGRQGGGSGMKNKGTGETKLE-LDRRRIEE 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK------DVA 245
            I  L++++   ++Q ++    R       + ++G++NAGKSSL NA+ K+         
Sbjct: 170 RITALQSELEKLVAQRQVQRKQRQKTGVPVVCLVGYTNAGKSSLLNAVLKEFMPESNKQV 229

Query: 246 IVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
           +  D+   T +     ++L       ++DT G          +  + T  EV  ADL++ 
Sbjct: 230 LAKDMLFATLETSVRGIELPDNKSFLLTDTVGFVSKLPHYLIKAFRSTLEEVTEADLLIQ 289

Query: 305 LKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEEYD---HLISSFTGE 349
           + + ++++                  +I  I+   K+DL      + +     +S     
Sbjct: 290 VVDFSNEEYERHIQVTNTTLKELGADHIPMIYAYNKTDLTDEQYPQVNGDKVYLSVKEEA 349

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           GL ELI  +K  +   +      IP  +  L      
Sbjct: 350 GLSELITLVKQQIFQDYMSCEVIIPFEEGRLVAYFNA 386


>gi|1698846|gb|AAC44620.1| GTP-binding protein [Thermoplasma acidophilum]
          Length = 360

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N L   +  I  D   TT   +   L+ +G  ++I D  GI E  
Sbjct: 63  VALVGFPNVGKSSLLNRLTNSESEI-GDYAFTTLQPIPGILEYKGAEIQILDLPGIIENA 121

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
                 G +     V  ADLI+++ ++ +
Sbjct: 122 SYGSARGRE-ILSAVRAADLIVIVTDVQA 149


>gi|302834102|ref|XP_002948614.1| iron hydrogenase assembly protein [Volvox carteri f. nagariensis]
 gi|300266301|gb|EFJ50489.1| iron hydrogenase assembly protein [Volvox carteri f. nagariensis]
          Length = 1198

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 13/188 (6%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278
             I + G  NAGKSSL NALA+++  IV   PGTT DV T+ L+L      K+ DTAG+ 
Sbjct: 687 INIGVFGIMNAGKSSLVNALAQQEACIVDSHPGTTADVKTVLLELHDLGPAKLLDTAGLD 746

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338
           E   + +K+  ++    ++           +    +    N++        D  +T + E
Sbjct: 747 EEGVLGDKK-RRKALNCLKEC---------DVAVVVVDTDNLERARSQPGCDPRTTLSWE 796

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
              +  +        L+  +K  +       P + PS  R    L++    L+       
Sbjct: 797 RKVMEQAAKYGVSPVLLLNVKPCVGGSGGGAPLT-PSDSRVGELLAEAHAALDP-DRKIP 854

Query: 399 DCGLDIIA 406
              LD+ A
Sbjct: 855 AMALDLAA 862


>gi|290894146|ref|ZP_06557117.1| GTP-binding domain-containing protein [Listeria monocytogenes FSL
           J2-071]
 gi|290556276|gb|EFD89819.1| GTP-binding domain-containing protein [Listeria monocytogenes FSL
           J2-071]
          Length = 409

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 103/297 (34%), Gaps = 53/297 (17%)

Query: 82  EFHVHGGIA---VVNGILEELAKMPNLRLANPGEFSRRAFE-----------NGKIDLLE 127
           E H     A   VV+ ++++L ++        G+    A             N ++   +
Sbjct: 29  ELHSLAKTANGEVVDELIQKLERVNQASFIGSGKLEELAALVEMHEADVVIFNSELSATQ 88

Query: 128 AESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKL-------THIRSFIE 173
             +++  + +      Q  L   +M      G+L   Y Q+   L         +     
Sbjct: 89  VRNISKAVEARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQGVSLSKLGG 148

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG----YKIVILGHSN 229
                   E       + +   +  +K  + +H+ Q +   I R      ++  ++G++N
Sbjct: 149 GIGSRGPGESKLEMDKRHIREKMHDIKAQL-THVEQHRKRIIERRNTQSVFRFGLIGYTN 207

Query: 230 AGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           AGKS++FN L  +    +  +   +  TTR +        G+   ++DT G  +      
Sbjct: 208 AGKSTIFNRLTNETTLQEDKLFATLDPTTRKIRF----SGGFQALLTDTVGFIQDLPTTL 263

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSD 330
               + T  E  N D+++ + + ++   +                ++  + I  K D
Sbjct: 264 IAAFRSTLEETANVDVLIHVVDASNPDYLQHETTVLSLLEELEMNHLPTLVIYNKMD 320


>gi|77462362|ref|YP_351866.1| Fe2+ transport system protein B [Rhodobacter sphaeroides 2.4.1]
 gi|77386780|gb|ABA77965.1| Fe2+ transport system protein B [Rhodobacter sphaeroides 2.4.1]
          Length = 770

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 78/212 (36%), Gaps = 27/212 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           +G  I +LG+ N GK++LFNAL      +V + PG T +  T ++   G    + D  G 
Sbjct: 2   SGATIALLGNPNCGKTTLFNALTGT-RQMVGNWPGVTVEKKTGEIRFAGRTAALVDLPGT 60

Query: 277 --IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTK 328
             +     +   E I R F     A L++ + + ++ +             +  +     
Sbjct: 61  YSLGSGHTVSTDERIARDFALSGEAQLVVNIVDASNIERNLYLTLQILEMGVPVVVALNM 120

Query: 329 SDLYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPS 375
            D+ ++   E D              I + TG G+EEL   +   L      + P S   
Sbjct: 121 MDIAASQRIEIDLEALAARLGCPVVPIVAATGRGIEELKAALVRALDTGVPAVKPLSYVP 180

Query: 376 HKRHLYHLSQTVRYLEMASLNEKD--CGLDII 405
                  ++  V  +E A          L+++
Sbjct: 181 EIEA--AVADLVPAIEAAGETRAPRWLALELL 210


>gi|332560246|ref|ZP_08414568.1| ferrous iron transport protein B [Rhodobacter sphaeroides WS8N]
 gi|332277958|gb|EGJ23273.1| ferrous iron transport protein B [Rhodobacter sphaeroides WS8N]
          Length = 770

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 78/212 (36%), Gaps = 27/212 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276
           +G  I +LG+ N GK++LFNAL      +V + PG T +  T ++   G    + D  G 
Sbjct: 2   SGATIALLGNPNCGKTTLFNALTGT-RQMVGNWPGVTVEKKTGEIRFAGRTAALVDLPGT 60

Query: 277 --IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTK 328
             +     +   E I R F     A L++ + + ++ +             +  +     
Sbjct: 61  YSLGSGHTVSTDERIARDFALSGEAQLVVNIVDASNIERNLYLTLQILEMGVPVVVALNM 120

Query: 329 SDLYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPS 375
            D+ ++   E D              I + TG G+EEL   +   L      + P S   
Sbjct: 121 MDIAASQRIEIDLEALAARLGCPVVPIVAATGRGIEELKAALVRALDTGVPAVKPLSYVP 180

Query: 376 HKRHLYHLSQTVRYLEMASLNEKD--CGLDII 405
                  ++  V  +E A          L+++
Sbjct: 181 EIEA--AVADLVPAIEAAGETRAPRWLALELL 210


>gi|307244269|ref|ZP_07526384.1| putative ferrous iron transport protein B [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492419|gb|EFM64457.1| putative ferrous iron transport protein B [Peptostreptococcus
           stomatis DSM 17678]
          Length = 673

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I +LG  N+GKS+LFN L   +   V + PG T +    +   +     I D  G   
Sbjct: 4   VTIALLGQPNSGKSTLFNGLTGSNQ-HVGNWPGKTVEKKEGEFSYKDTNYTIVDLPGTYG 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYS 333
                E+E I R ++E  NADLI ++ + +      F        NI  + I    D+ +
Sbjct: 63  LSANSEEEVITREYIETGNADLIAIMADASQLNRSLFMLSDYIGINIPVVLIMNMMDVAT 122

Query: 334 TYTEEYDH 341
           +  +  + 
Sbjct: 123 SQGKNINI 130


>gi|271498983|ref|YP_003332008.1| GTP-binding protein HSR1-like protein [Dickeya dadantii Ech586]
 gi|270342538|gb|ACZ75303.1| GTP-binding protein HSR1-related protein [Dickeya dadantii Ech586]
          Length = 288

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 82/195 (42%), Gaps = 21/195 (10%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
             +D      + +     ++   I  HI Q    E +     I I+G + AGKSSL NAL
Sbjct: 2   NHQDGPAPLRQALSGLPEWVTAQIWQHIRQLTHYEPV-----IGIMGKTGAGKSSLCNAL 56

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTFLEVE 297
              +V+ V+D+   TR+ L   L++    + + D  G+ E++  DI      ++    + 
Sbjct: 57  FAGEVSPVSDVSACTREPLRFRLNVGERCMTLVDLPGVGESERRDIEYAAMYRQQLPHL- 115

Query: 298 NADLILLLKEINSK----------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
             DL+L L + + +          + I        +F+ +++D     TE     +S+  
Sbjct: 116 --DLVLWLIKADDRALAVDEHFYHQVIGEAWRHKVLFVVSQADKIEP-TEGGVKALSAIQ 172

Query: 348 GEGLEELINKIKSIL 362
            + LE  I  + ++ 
Sbjct: 173 RQSLERKIALLHTLF 187


>gi|145492421|ref|XP_001432208.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399318|emb|CAK64811.1| unnamed protein product [Paramecium tetraurelia]
          Length = 634

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 87/218 (39%), Gaps = 23/218 (10%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSH-ISQGK--LGEIIRNGYKIVILGHSNAGKSSLFNA 238
           E       +++   I  ++  I    + +GK    ++I    +I ++G++NAGKS L N 
Sbjct: 340 ESEIQIQRRQIDERIAKVRRQIEEEGLQRGKLKQKKLIHTVPRIALIGYTNAGKSQLLNC 399

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           + +K+V    D+   T    +  + L  G    + DT G          E  K T  EV 
Sbjct: 400 ILQKEVVESKDLLFQTLSTTSKQIRLASGQKAIMLDTIGFITDLPHDLVESFKCTLEEVA 459

Query: 298 NADLILLLKEINSK-------------KEISFPKNI---DFIFIGTKSDLYSTYTEEYDH 341
           +AD++L +++I+               +++ F +       I +  K DL  T  +    
Sbjct: 460 DADIVLHIRDISHPCSEQQKQVVLEVLQQLGFNEEFYSKKMIEVWNKIDLMRTPIDFKQI 519

Query: 342 LISSFTGEGLEELIN-KIKSILSNKFKKLPFSIPSHKR 378
              ++    +  L N  +K +L     K    +  +KR
Sbjct: 520 QQETYPIVPISALFNTNVKQLLQIMEDKSN--LIMNKR 555


>gi|22124545|ref|NP_667968.1| putative GTPase HflX [Yersinia pestis KIM 10]
 gi|45440384|ref|NP_991923.1| putative GTPase HflX [Yersinia pestis biovar Microtus str. 91001]
 gi|51594778|ref|YP_068969.1| GTPase HflX [Yersinia pseudotuberculosis IP 32953]
 gi|108809900|ref|YP_653816.1| putative GTPase HflX [Yersinia pestis Antiqua]
 gi|108813457|ref|YP_649224.1| putative GTPase HflX [Yersinia pestis Nepal516]
 gi|145600847|ref|YP_001164923.1| putative GTPase HflX [Yersinia pestis Pestoides F]
 gi|150260582|ref|ZP_01917310.1| GTP-binding protein [Yersinia pestis CA88-4125]
 gi|162418144|ref|YP_001605278.1| putative GTPase HflX [Yersinia pestis Angola]
 gi|165926704|ref|ZP_02222536.1| GTP-binding protein HflX [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936503|ref|ZP_02225071.1| GTP-binding protein HflX [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011873|ref|ZP_02232771.1| GTP-binding protein HflX [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213974|ref|ZP_02240009.1| GTP-binding protein HflX [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400529|ref|ZP_02306038.1| GTP-binding protein HflX [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419401|ref|ZP_02311154.1| GTP-binding protein HflX [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423439|ref|ZP_02315192.1| GTP-binding protein HflX [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170026012|ref|YP_001722517.1| putative GTPase HflX [Yersinia pseudotuberculosis YPIII]
 gi|186893786|ref|YP_001870898.1| putative GTPase HflX [Yersinia pseudotuberculosis PB1/+]
 gi|218927577|ref|YP_002345452.1| putative GTPase HflX [Yersinia pestis CO92]
 gi|229836634|ref|ZP_04456800.1| predicted GTPase [Yersinia pestis Pestoides A]
 gi|229840246|ref|ZP_04460405.1| predicted GTPase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842324|ref|ZP_04462479.1| predicted GTPase [Yersinia pestis biovar Orientalis str. India 195]
 gi|229903937|ref|ZP_04519050.1| predicted GTPase [Yersinia pestis Nepal516]
 gi|270489076|ref|ZP_06206150.1| GTP-binding protein HflX [Yersinia pestis KIM D27]
 gi|294502483|ref|YP_003566545.1| GTP-binding protein [Yersinia pestis Z176003]
 gi|21957343|gb|AAM84219.1|AE013665_8 putative GTP binding subunit for protease of lambda cII repressor
           [Yersinia pestis KIM 10]
 gi|45435240|gb|AAS60800.1| GTP-binding protein [Yersinia pestis biovar Microtus str. 91001]
 gi|51588060|emb|CAH19666.1| GTP-binding protein [Yersinia pseudotuberculosis IP 32953]
 gi|108777105|gb|ABG19624.1| GTP-binding protein [Yersinia pestis Nepal516]
 gi|108781813|gb|ABG15871.1| GTP-binding protein [Yersinia pestis Antiqua]
 gi|115346188|emb|CAL19056.1| GTP-binding protein [Yersinia pestis CO92]
 gi|145212543|gb|ABP41950.1| GTP-binding protein [Yersinia pestis Pestoides F]
 gi|149289990|gb|EDM40067.1| GTP-binding protein [Yersinia pestis CA88-4125]
 gi|162350959|gb|ABX84907.1| GTP-binding protein HflX [Yersinia pestis Angola]
 gi|165915619|gb|EDR34228.1| GTP-binding protein HflX [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921327|gb|EDR38551.1| GTP-binding protein HflX [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989232|gb|EDR41533.1| GTP-binding protein HflX [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166204769|gb|EDR49249.1| GTP-binding protein HflX [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963395|gb|EDR59416.1| GTP-binding protein HflX [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049897|gb|EDR61305.1| GTP-binding protein HflX [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057609|gb|EDR67355.1| GTP-binding protein HflX [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752546|gb|ACA70064.1| GTP-binding proten HflX [Yersinia pseudotuberculosis YPIII]
 gi|186696812|gb|ACC87441.1| GTP-binding proten HflX [Yersinia pseudotuberculosis PB1/+]
 gi|229679707|gb|EEO75810.1| predicted GTPase [Yersinia pestis Nepal516]
 gi|229690634|gb|EEO82688.1| predicted GTPase [Yersinia pestis biovar Orientalis str. India 195]
 gi|229696612|gb|EEO86659.1| predicted GTPase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706318|gb|EEO92326.1| predicted GTPase [Yersinia pestis Pestoides A]
 gi|262360513|gb|ACY57234.1| GTP-binding protein [Yersinia pestis D106004]
 gi|262364461|gb|ACY61018.1| GTP-binding protein [Yersinia pestis D182038]
 gi|270337580|gb|EFA48357.1| GTP-binding protein HflX [Yersinia pestis KIM D27]
 gi|294352942|gb|ADE63283.1| GTP-binding protein [Yersinia pestis Z176003]
 gi|320013760|gb|ADV97331.1| putative GTPase [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 428

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 113/354 (31%), Gaps = 50/354 (14%)

Query: 70  PSPESFTGEDSAE-----FHVHGGIAVV-NGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           P P+ F GE  AE         G   V+ +  L    +    RL                
Sbjct: 52  PHPKYFVGEGKAEEIADAVKASGASVVLFDHALSAAQERNLERLCQ-------------C 98

Query: 124 DLLEAESLADLISSETEMQR----RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            +++   L   I ++         ++ +  +    + L   W   L   +  I       
Sbjct: 99  RVIDRTGLILDIFAQRARTHEGKLQVELAQLRHIATRLVRGWTH-LERQKGGIGLRGPGE 157

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            + +      ++ ++ IL     ++    QG+      +   + ++G++NAGKSSLFN +
Sbjct: 158 TQLETDRRLLRDRISLILSRLERVAKQREQGRRARTRADIPTVSLVGYTNAGKSSLFNKI 217

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
              DV    D    T D     +++       ++DT G             K T  E   
Sbjct: 218 TAADV-YAADQLFATLDPTLRRINVADVGDTVLADTVGFIRHLPHDLVAAFKATLQETRQ 276

Query: 299 ADLILLLKEINSKKEIS------------FPKNIDFIFIGTKSDLYSTYTEEYD------ 340
           A L+L + +    +                   I  + +  K DL   +    D      
Sbjct: 277 ASLLLHIIDAADPRVAENMAAVDTVLAEIEADEIPTLLVMNKIDLLDDFVPRIDRNEDNL 336

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
                +S+ TG G+  L   +   LS +       +P      R  ++  Q + 
Sbjct: 337 PVRVWLSAQTGAGIPLLFQALTERLSGEIAHFELRLPPQAGRLRSRFYQLQAIE 390


>gi|297571540|ref|YP_003697314.1| GTP-binding protein Era [Arcanobacterium haemolyticum DSM 20595]
 gi|296931887|gb|ADH92695.1| GTP-binding protein Era [Arcanobacterium haemolyticum DSM 20595]
          Length = 310

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  R G+ I I+G  NAGKS+L NAL    + I  + P TTR ++   +  +   + + D
Sbjct: 11  EDYRAGF-ISIVGRPNAGKSTLTNALVGTKIVITANQPETTRRIVRGIVQRDHGQLILVD 69

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           T G+     ++ +         ++  D  L+    + K
Sbjct: 70  TPGLHRPRTLLGERLNDMVRDSLDGVDAALMCLPADEK 107


>gi|255014935|ref|ZP_05287061.1| ferrous iron transport protein B [Bacteroides sp. 2_1_7]
          Length = 812

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 19/164 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GK+SLFN  +      V +  G T D         GY  +I D  G   
Sbjct: 97  INVALVGNPNCGKTSLFNFASGAHE-HVGNYSGVTVDAKEGTFQQNGYTFRIVDLPGTYS 155

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----NIDFIFI--GTKSDLYS 333
                 +E   R  L  E  D+++ + + ++ +   +      ++D   +      D   
Sbjct: 156 LSAYTPEELYVRKHLNEEQPDVVINVIDASNLERNLYLTAQLIDMDVRMVIALNMYDELE 215

Query: 334 TYTEEYDH------------LISSFTGEGLEELINKIKSILSNK 365
            +  ++DH               S TG G+E+L N++  +   +
Sbjct: 216 RHGNKFDHESLAKMIGAPIIPTVSKTGFGIEDLFNRVIKVYEEE 259


>gi|254430582|ref|ZP_05044285.1| ferrous iron transport protein B [Cyanobium sp. PCC 7001]
 gi|197625035|gb|EDY37594.1| ferrous iron transport protein B [Cyanobium sp. PCC 7001]
          Length = 600

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 21/170 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL--DLEGYLVKISDTAGIRE 279
           + ++G  N GKS+L+N L     A V + PG T ++L   L  D +G   ++ D  GI +
Sbjct: 7   VALVGMPNTGKSTLYNRLTGGQ-AHVANWPGLTVELLRGALPPDRQGTPFELIDLPGIHD 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN-SKKEISF-----PKNIDFIFIGTKSDLYS 333
                E E I    LE    DL+L++   + ++ ++          +  +     SD   
Sbjct: 66  LSGSSEDEAIVARMLERTPPDLVLVVLNASQARSQLRLLLQVRALGLPVVAALNMSDEAQ 125

Query: 334 TYTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
            +    DH             +S+   +G++ LI+ I +         P 
Sbjct: 126 RHGVRIDHAGLAAALGLPVLAVSARRRQGIDALIHSIHTTAEQLGGPAPG 175


>gi|16082451|ref|NP_394940.1| GTP-binding protein [Thermoplasma acidophilum DSM 1728]
 gi|10640829|emb|CAC12607.1| GTP-binding protein [Thermoplasma acidophilum]
          Length = 360

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  N GKSSL N L   +  I  D   TT   +   L+ +G  ++I D  GI E  
Sbjct: 63  VALVGFPNVGKSSLLNRLTNSESEI-GDYAFTTLQPIPGILEYKGAEIQILDLPGIIENA 121

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310
                 G +     V  ADLI+++ ++ +
Sbjct: 122 SYGSARGRE-ILSAVRAADLIVIVTDVQA 149


>gi|329736618|gb|EGG72884.1| GTP-binding protein HflX [Staphylococcus epidermidis VCU045]
          Length = 413

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 81/211 (38%), Gaps = 16/211 (7%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + +     ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSREGKLQVELAQLD-YLLPRLHGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        ++I ++G++NAGKSS FN LA ++     +I   
Sbjct: 180 NEIKHQLKTVVDHRERYRNKREQNQVFQIALVGYTNAGKSSWFNVLANEE-TYEKNILFA 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T  + + EG+ + ISDT G  +          K T  E + AD+++ + + +  +
Sbjct: 239 TLDPKTRQIQVNEGFNLIISDTVGFIQKLPTTLVAAFKSTLEEAKGADVLMHVVDASHSE 298

Query: 313 ------------EISFPKNIDFIFIGTKSDL 331
                             +I  + I  K DL
Sbjct: 299 YRTQIDTVNQIINDLDMDHIPQVVIFNKKDL 329


>gi|262381329|ref|ZP_06074467.1| ferrous iron transporter B [Bacteroides sp. 2_1_33B]
 gi|262296506|gb|EEY84436.1| ferrous iron transporter B [Bacteroides sp. 2_1_33B]
          Length = 829

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 19/164 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GK+SLFN  +      V +  G T D         GY  +I D  G   
Sbjct: 114 INVALVGNPNCGKTSLFNFASGAHE-HVGNYSGVTVDAKEGTFQQNGYTFRIVDLPGTYS 172

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----NIDFIFI--GTKSDLYS 333
                 +E   R  L  E  D+++ + + ++ +   +      ++D   +      D   
Sbjct: 173 LSAYTPEELYVRKHLNEEQPDVVINVIDASNLERNLYLTAQLIDMDVRMVIALNMYDELE 232

Query: 334 TYTEEYDH------------LISSFTGEGLEELINKIKSILSNK 365
            +  ++DH               S TG G+E+L N++  +   +
Sbjct: 233 RHGNKFDHESLAKMIGAPIIPTVSKTGFGIEDLFNRVIKVYEEE 276


>gi|17228399|ref|NP_484947.1| hypothetical protein alr0904 [Nostoc sp. PCC 7120]
 gi|17130250|dbj|BAB72861.1| alr0904 [Nostoc sp. PCC 7120]
          Length = 448

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 12/159 (7%)

Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +K +I        L ++  N  +I   G  + GKS++ NAL    +     + G T+   
Sbjct: 42  VKPEIEVL--NSTLNKLDSNVIRIAAFGLVSRGKSAVLNALLGSKILQTGPLNGVTQWPR 99

Query: 259 TIDLDLEGYLVK-ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK--EINSKKEIS 315
           ++     G ++  + DT G+ E       +        V  ADLIL +   +I   +  +
Sbjct: 100 SVRWQPGGKVIVELIDTPGLDEIQGESRAQM---ARDVVRQADLILFVVSGDITRTEYQA 156

Query: 316 FPK----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
             +        I +  K DLY    +   +      G G
Sbjct: 157 LLELRQAQKPLILVFNKIDLYPDTDQAAIYRNLQQLGAG 195


>gi|317009507|gb|ADU80087.1| GTP-binding protein Era [Helicobacter pylori India7]
          Length = 301

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 81/217 (37%), Gaps = 28/217 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQKYASQFLALVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR-----YLEMASLNEKDCGLDIIAENLR 410
                 + +R     +L      E D  +D   E  R
Sbjct: 188 MRDIYKEIIRESLFVFLSDEIPYESDVMIDKFIEEER 224


>gi|86135728|ref|ZP_01054307.1| GTP-binding protein Era [Roseobacter sp. MED193]
 gi|85826602|gb|EAQ46798.1| GTP-binding protein Era [Roseobacter sp. MED193]
          Length = 301

 Score = 64.5 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 76/205 (37%), Gaps = 24/205 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARVRGVAMEGESQIVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           + +    +++  +   +    +A+++LLL E +           +      +      + 
Sbjct: 63  LFQPRRRLDRAMVAAAWGGAADAEIVLLLVEAHRGITEGVERILEGLADVAQGRTVGLVI 122

Query: 327 TKSD---------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         L     E +D      IS+  G G+++L + +   L       P   
Sbjct: 123 NKIDRVQSEVLLGLTKDLNERFDFAETFLISAERGHGVDDLRSWLAQELPEGPWLYPEDQ 182

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            +        ++  R      L+++
Sbjct: 183 IADLPMRMIAAEITREKLTLRLHQE 207


>gi|301309806|ref|ZP_07215745.1| ferrous iron transport protein B [Bacteroides sp. 20_3]
 gi|300831380|gb|EFK62011.1| ferrous iron transport protein B [Bacteroides sp. 20_3]
          Length = 829

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 19/164 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GK+SLFN  +      V +  G T D         GY  +I D  G   
Sbjct: 114 INVALVGNPNCGKTSLFNFASGAHE-HVGNYSGVTVDAKEGTFQQNGYTFRIVDLPGTYS 172

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----NIDFIFI--GTKSDLYS 333
                 +E   R  L  E  D+++ + + ++ +   +      ++D   +      D   
Sbjct: 173 LSAYTPEELYVRKHLNEEQPDVVINVIDASNLERNLYLTAQLIDMDVRMVIALNMYDELE 232

Query: 334 TYTEEYDH------------LISSFTGEGLEELINKIKSILSNK 365
            +  ++DH               S TG G+E+L N++  +   +
Sbjct: 233 RHGNKFDHESLAKMIGAPIIPTVSKTGFGIEDLFNRVIKVYEEE 276


>gi|299067272|emb|CBJ38469.1| GTP-binding protein hflX, GTPase activity [Ralstonia solanacearum
           CMR15]
          Length = 417

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 74/214 (34%), Gaps = 29/214 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + +      L  ++     Q       R   + + + ++G++NAGKS+LFNAL K 
Sbjct: 165 ELDRRMLDERAKRLSAELDRLQRQHDTQRRARSRNDAFSVSLVGYTNAGKSTLFNALTKA 224

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
             A   +    T D  +  L LEG   V +SDT G             + T  E  +AD+
Sbjct: 225 -RAYAANQLFATLDTTSRRLYLEGLGNVVLSDTVGFIRDLPTQLVAAFRATLEETVHADV 283

Query: 302 ILLLKEINSKKEISFPKNIDF------------IFIGTKSDLYSTYTEEYD--------- 340
           +L + +  S  +    + +D             I +  K D       +           
Sbjct: 284 LLHVVDAASAVKHEQMEQVDRVLAEINASDIPQILVMNKIDAAEELRTQGPRIERDEAGA 343

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
                +S+  G GLE L   +        +  P 
Sbjct: 344 VRRVFVSALEGAGLELLREALVETAIRLREHPPS 377


>gi|256830786|ref|YP_003159514.1| GTP-binding proten HflX [Desulfomicrobium baculatum DSM 4028]
 gi|256579962|gb|ACU91098.1| GTP-binding proten HflX [Desulfomicrobium baculatum DSM 4028]
          Length = 540

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 93/249 (37%), Gaps = 25/249 (10%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++T   +    M  +   +  L GQ    L+ +   I          ++     +E + 
Sbjct: 295 HAQTREGKMQVEMAQLKYMMPRLVGQSR-ALSRLAGGIGGRGPGESRLEMDRRKIRERIA 353

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
            I      +  H  +       + G  IV ++G++NAGKS+L N L K  V +  +    
Sbjct: 354 QIKTELGSVRKH-RKSTRSRRDKAGLPIVSLVGYTNAGKSTLLNTLTKS-VVLAENKLFA 411

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  +  L   E   + ++DT G         +E    T  E+E+AD+++ + + +  +
Sbjct: 412 TLDPTSRRLRFPEDREIILTDTVGFIRHLPADLREAFMATLEELESADVLVHVADASHPE 471

Query: 313 EISF------------PKNIDFIFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEE 353
             +                I  I    K D  S  T +           IS+     L  
Sbjct: 472 MEAQVQAVESILRDLSIDGIPRILALNKIDRISEETRQTLGYVYPDAVFISAIERPTLAP 531

Query: 354 LINKIKSIL 362
           L++++K++L
Sbjct: 532 LVDRVKALL 540


>gi|240016457|ref|ZP_04722997.1| GTP-binding protein [Neisseria gonorrhoeae FA6140]
          Length = 374

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 72/213 (33%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDV 244
             +   + I  LK  +++   Q  L    R   +I    ++G++N GKSSLFN L K  +
Sbjct: 162 DRRLTAHRINALKKQLANLKKQRALRRKSRESGRIKTFALVGYTNVGKSSLFNRLTKSGI 221

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T    +          + ++DT G               T  E   AD++L 
Sbjct: 222 YAKDQLFATLDTTVRRLYISPACSIILTDTVGFVSDLPHKLISAFSATLEETVQADVLLH 281

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 282 VVDAAARNSGQQIEDVENVLQEIHAHDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 341

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 342 RISVAENTGIDALREAIAEYCAAAPNTDETEMP 374


>gi|228910134|ref|ZP_04073954.1| GTP-binding protein era [Bacillus thuringiensis IBL 200]
 gi|229192509|ref|ZP_04319472.1| GTP-binding protein era [Bacillus cereus ATCC 10876]
 gi|228591086|gb|EEK48942.1| GTP-binding protein era [Bacillus cereus ATCC 10876]
 gi|228849651|gb|EEM94485.1| GTP-binding protein era [Bacillus thuringiensis IBL 200]
          Length = 266

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +D P TTR+ +          V   DT GI +    +    +K     ++  D++L +  
Sbjct: 2   SDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVN 61

Query: 308 I----NSKKEISFPK----NIDFIFIGTKSD---------LYSTYTEEYDH----LISSF 346
                   +E    K          +  K D         L   Y + ++      IS+ 
Sbjct: 62  AVEGFGRGEEFIIEKLKETKQPVFLVINKIDQLHPEQLLELIDQYRKLHEFAEIVPISAL 121

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            G  ++ LI  IK  L    +  P +  +     + +++ +R
Sbjct: 122 DGNNVDALIGTIKKYLPEGPQYYPDNQVTDHPERFIIAELIR 163


>gi|150008097|ref|YP_001302840.1| ferrous iron transport protein B [Parabacteroides distasonis ATCC
           8503]
 gi|298376550|ref|ZP_06986505.1| ferrous iron transport protein B [Bacteroides sp. 3_1_19]
 gi|149936521|gb|ABR43218.1| ferrous iron transport protein B [Parabacteroides distasonis ATCC
           8503]
 gi|298266428|gb|EFI08086.1| ferrous iron transport protein B [Bacteroides sp. 3_1_19]
          Length = 829

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 19/164 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GK+SLFN  +      V +  G T D         GY  +I D  G   
Sbjct: 114 INVALVGNPNCGKTSLFNFASGAHE-HVGNYSGVTVDAKEGTFQQNGYTFRIVDLPGTYS 172

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----NIDFIFI--GTKSDLYS 333
                 +E   R  L  E  D+++ + + ++ +   +      ++D   +      D   
Sbjct: 173 LSAYTPEELYVRKHLNEEQPDVVINVIDASNLERNLYLTAQLIDMDVRMVIALNMYDELE 232

Query: 334 TYTEEYDH------------LISSFTGEGLEELINKIKSILSNK 365
            +  ++DH               S TG G+E+L N++  +   +
Sbjct: 233 RHGNKFDHESLAKMIGAPIIPTVSKTGFGIEDLFNRVIKVYEEE 276


>gi|256840724|ref|ZP_05546232.1| ferrous iron transporter B [Parabacteroides sp. D13]
 gi|256737996|gb|EEU51322.1| ferrous iron transporter B [Parabacteroides sp. D13]
          Length = 829

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 19/164 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N GK+SLFN  +      V +  G T D         GY  +I D  G   
Sbjct: 114 INVALVGNPNCGKTSLFNFASGAHE-HVGNYSGVTVDAKEGTFQQNGYTFRIVDLPGTYS 172

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----NIDFIFI--GTKSDLYS 333
                 +E   R  L  E  D+++ + + ++ +   +      ++D   +      D   
Sbjct: 173 LSAYTPEELYVRKHLNEEQPDVVINVIDASNLERNLYLTAQLIDMDVRMVIALNMYDELE 232

Query: 334 TYTEEYDH------------LISSFTGEGLEELINKIKSILSNK 365
            +  ++DH               S TG G+E+L N++  +   +
Sbjct: 233 RHGNKFDHESLAKMIGAPIIPTVSKTGFGIEDLFNRVIKVYEEE 276


>gi|123440761|ref|YP_001004753.1| putative GTPase HflX [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|332160023|ref|YP_004296600.1| putative GTPase HflX [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|122087722|emb|CAL10507.1| GTP-binding protein [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|318607419|emb|CBY28917.1| GTP-binding protein HflX [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664253|gb|ADZ40897.1| putative GTPase HflX [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330862094|emb|CBX72260.1| GTP-binding protein hflX [Yersinia enterocolitica W22703]
          Length = 433

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 94/279 (33%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ ++
Sbjct: 114 RARTHEGKLQVELAQLRHIATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDRIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     ++    QG+      +   + ++G++NAGKSSLFN +   DV    D    T
Sbjct: 173 LILSRLERVAKQREQGRRARTRADIPTVSLVGYTNAGKSSLFNKITAADV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     +++       ++DT G             K T  E   A L+L + +    + 
Sbjct: 232 LDPTLRRINVADVGDTVLADTVGFIRHLPHDLVAAFKATLQETRQASLLLHIIDAADPRV 291

Query: 314 IS------------FPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                             I  + +  K DL   +    D           +S+ TG G+ 
Sbjct: 292 AENMAAVDSVLAEIEADEIPTLLVMNKIDLLDDFVPRIDRNEENLPVRVWLSAQTGAGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            L   +   LS +       +P      R  ++  Q + 
Sbjct: 352 LLFQALTERLSGEIAHFELRLPPQAGRLRSRFYQLQAIE 390


>gi|298490944|ref|YP_003721121.1| GTP-binding proten HflX ['Nostoc azollae' 0708]
 gi|298232862|gb|ADI63998.1| GTP-binding proten HflX ['Nostoc azollae' 0708]
          Length = 583

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 84/207 (40%), Gaps = 24/207 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           + +  + ++ ++ +    N + +H  + +     R    + ++G++NAGKS+L NAL   
Sbjct: 372 ETERRAIQKRISRLQQEVNQLQAHRCRLRQRRQHREVPSVALVGYTNAGKSTLLNALTNA 431

Query: 243 DVA----IVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +V     +   +  TTR ++   +   E     I+DT G          +  + T  EV 
Sbjct: 432 EVYTADQLFATLDPTTRRLIIPHVGTSELQETLITDTVGFIHELPNSLMDAFRATLEEVT 491

Query: 298 NADLILLLKEINSKKEISFPKNI------------DFIFIGTKSDLYSTYT-----EEYD 340
            AD ++ L +++    +S  +++              + +  K D   +       EE+ 
Sbjct: 492 EADALIHLVDLSHPAWLSHIRSVRDILAQMPITPGPCLVVFNKIDQVDSEALALAREEFP 551

Query: 341 --HLISSFTGEGLEELINKIKSILSNK 365
               IS+    GLE L  ++  ++   
Sbjct: 552 LAVFISASQRLGLETLRQRLSQLIQYA 578


>gi|329955643|ref|ZP_08296551.1| ferrous iron transport protein B [Bacteroides clarus YIT 12056]
 gi|328526046|gb|EGF53070.1| ferrous iron transport protein B [Bacteroides clarus YIT 12056]
          Length = 840

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 24/198 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                + L++ + L  +    I+ GK     R    + ++G+ N GK+SLFN  +     
Sbjct: 100 QLDYHKGLSEDMRLGEEELKRIALGK-----RRTINVALVGNPNCGKTSLFNIASGSHE- 153

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            V +  G T D      D +GY  +I D  G         +E   R  +  E  D+I+ +
Sbjct: 154 HVGNYSGVTVDAKEGYFDFQGYHFRIVDLPGTYSLSAYSPEEIYVRHHIINETPDIIINV 213

Query: 306 KEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDH------------LISSFT 347
            + ++ +            N+  +      D         D+               S T
Sbjct: 214 VDSSNLERNLYLTTQLIDMNVRMVIALNMYDELEASGNTLDYVKLGQLFGVPMLPTISRT 273

Query: 348 GEGLEELINKIKSILSNK 365
           G+G+E+L + I  I    
Sbjct: 274 GKGIEQLFHVIIDIYEGG 291


>gi|317179116|dbj|BAJ56904.1| GTP-binding protein Era [Helicobacter pylori F30]
          Length = 301

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 74/190 (38%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDL- 331
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127

Query: 332 -----------YSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                      Y  Y  ++     +S+   + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQGYQQYASQFLALVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR 388
                 + +R
Sbjct: 188 MRNIYKEIIR 197


>gi|319779669|ref|YP_004130582.1| GTP-binding protein HflX [Taylorella equigenitalis MCE9]
 gi|317109693|gb|ADU92439.1| GTP-binding protein HflX [Taylorella equigenitalis MCE9]
          Length = 355

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 94/269 (34%), Gaps = 24/269 (8%)

Query: 115 RRAFENGKID-LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
            RAF    ID +     +  L +   E + ++ +  +   ++ L   W   L   R  I 
Sbjct: 85  ERAFGLRVIDRVTLILDIFALRAKSHEGKLQVELAQLQHLITRLTRLWTH-LERQRGGIG 143

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
                  + ++      + +  +      + +     +      N   + ++G++NAGKS
Sbjct: 144 MRGPGESQLEMDRRMIGDKVKQLKERLAKLDTQRLTQRRARARSNMLSVSLVGYTNAGKS 203

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRT 292
           +LFNAL +        +   T D  T  + +E    V ISDT G             K T
Sbjct: 204 TLFNALTRAGTYEADQLFA-TLDTTTRRIWIEDVGQVTISDTVGFIRDLPTTLIAAFKAT 262

Query: 293 FLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE-EY 339
             E  +ADL+  + +  + +                 ++I  I +  K DL       E 
Sbjct: 263 LEETVHADLLFHVVDAANPQRDEQILEVNKVLKEINAEDIPTILVYNKIDLLEQGARIET 322

Query: 340 D-------HLISSFTGEGLEELINKIKSI 361
           D         +SS T EG+  L   I   
Sbjct: 323 DEQGKINRIFVSSKTREGMNLLRKAIAEF 351


>gi|315282142|ref|ZP_07870612.1| GTP-binding protein HflX [Listeria marthii FSL S4-120]
 gi|313614207|gb|EFR87881.1| GTP-binding protein HflX [Listeria marthii FSL S4-120]
          Length = 409

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 93/249 (37%), Gaps = 24/249 (9%)

Query: 117 AFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175
           A E   ID  +       + ++++    +++       L          L+ +   I + 
Sbjct: 95  AVEARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYK-YLLPRLSGQGASLSKLGGGIGSR 153

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
                + ++     +E ++DI      +  H  +       ++ ++  ++G++NAGKS++
Sbjct: 154 GPGESKLEMDKRHIREKMHDIKAQLTHVEQHRKRIIERRNTQSVFRFGLIGYTNAGKSTI 213

Query: 236 FNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291
           FN L  +    +  +   +  TTR +        G+   ++DT G  +          + 
Sbjct: 214 FNRLTNETTLQEDKLFATLDPTTRKIRF----SGGFQALLTDTVGFIQDLPTTLIAAFRS 269

Query: 292 TFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSD--LYSTYTE 337
           T  E  N D+++ + + ++   +                ++  + I  K D    S   +
Sbjct: 270 TLEETANVDVLIHVVDASNPDYLQHETTVVSLLEELEMNHLPTLVIYNKMDQAPASFVPD 329

Query: 338 EYDHLISSF 346
           + +HL+ S 
Sbjct: 330 QPEHLLISA 338


>gi|312073353|ref|XP_003139482.1| hypothetical protein LOAG_03897 [Loa loa]
 gi|307765352|gb|EFO24586.1| hypothetical protein LOAG_03897 [Loa loa]
          Length = 672

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI 196
           ++T+  +          +        +   +  +F    LD SE+   +           
Sbjct: 207 AKTKEAKLQIQLAEIPYIRQRLLSMYELRVNPSTFH---LDTSEKSRAERLEVLRYREQH 263

Query: 197 LF--LKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           L   LK  +   I+  ++GE  +N    I ++G++NAGKSSL   L  +++  V D    
Sbjct: 264 LRKCLKAAVEEKIN-LRIGEAQKNIQTVIAVVGYTNAGKSSLIKRLTGRNL-YVEDRLFA 321

Query: 254 TRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D       L  G  +  +DT G             + T   V NA+L+L +++I++  
Sbjct: 322 TLDTSLHVFRLPSGLPILFADTIGFISNLPTQLLASFQATLNHVANANLLLHVEDISNPD 381

Query: 313 EISF------------PKN---IDFIFIGTKSDLYSTYT--EEYDHLISSFTGEGLEELI 355
            ++              KN      I +G K D  S     E   + +S   G GL EL+
Sbjct: 382 YLTQRDVVMKTLSALKIKNELLDSVIRVGNKIDKLSRLPADEPNTYFVSCADGRGLVELM 441

Query: 356 NKIKSIL 362
             +   +
Sbjct: 442 AAVDKRV 448


>gi|288817638|ref|YP_003431985.1| ferrous iron transport protein B [Hydrogenobacter thermophilus
           TK-6]
 gi|288787037|dbj|BAI68784.1| ferrous iron transport protein B [Hydrogenobacter thermophilus
           TK-6]
 gi|308751236|gb|ADO44719.1| ferrous iron transport protein B [Hydrogenobacter thermophilus
           TK-6]
          Length = 686

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 78/203 (38%), Gaps = 25/203 (12%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           ++++   ++ + G+ N GK+S+ N LA   +  V + PG T +        + Y + + D
Sbjct: 2   KVLKKILRVALAGNPNVGKTSILNHLAGTTLK-VGNWPGVTVEKREGKATYKDYTLILID 60

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-INSKKEISFPK-----NIDFIFIGT 327
             GI   + + E E I   FL  E+ D+I+ + E  N ++++          +  + +  
Sbjct: 61  LPGIYTLEPVSEDELIAYRFLTEESPDVIVNVIETPNMERDLLLTAQFLELGMPMVIVLN 120

Query: 328 KSDLYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
             D       E D               +  TG G++E+++ +        K        
Sbjct: 121 MMDEAQKLGIEIDTQRLEGLLGIKVVKTNGRTGLGVKEILSAVIETYEKGIKPKEV---- 176

Query: 376 HKRHLYHLSQTVRYLEMASLNEK 398
             R+   + + +  L   +   K
Sbjct: 177 --RYSEEMEKILDALREEASESK 197


>gi|228902823|ref|ZP_04066968.1| GTP-binding protein era [Bacillus thuringiensis IBL 4222]
 gi|228967365|ref|ZP_04128400.1| GTP-binding protein era [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792400|gb|EEM39967.1| GTP-binding protein era [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228856832|gb|EEN01347.1| GTP-binding protein era [Bacillus thuringiensis IBL 4222]
          Length = 266

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +D P TTR+ +          V   DT GI +    +    +K     ++  D++L +  
Sbjct: 2   SDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMVN 61

Query: 308 I----NSKKEISFPK----NIDFIFIGTKSD---------LYSTYTEEYDH----LISSF 346
                   +E    K          +  K D         L   Y + ++      IS+ 
Sbjct: 62  AVEGFGRGEEFIIEKLKETKQPVFLVINKIDQLHPEQLLELIDQYRKLHEFAEIVPISAL 121

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
            G  ++ LI  IK  L    +  P +  +     + +++ +R
Sbjct: 122 DGNNVDALIGTIKKYLPEGPQYYPDNQVTDHPERFIIAELIR 163


>gi|144899203|emb|CAM76067.1| GTP-binding protein, HSR1 [Magnetospirillum gryphiswaldense MSR-1]
          Length = 437

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 90/265 (33%), Gaps = 28/265 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E   ++ +  +S + S L   W         F         + +       + + 
Sbjct: 123 RARTREGSLQVELAALSYQRSRLVRSWTHLERQRGGFGFLGGPGETQIEADRRMIGDRIV 182

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            +     ++       +          + ++G++NAGKS+LFN L + +V +  D+   T
Sbjct: 183 KLKRELEEVKRTRELHRSARRRVPYPIVALVGYTNAGKSTLFNRLTQSEV-LAKDMLFAT 241

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-- 311
            D     L L  G  + +SDT G             + T  EV  AD+++ ++++     
Sbjct: 242 LDPTMRGLKLPSGRQIILSDTVGFISDLPHELVAAFRATLEEVLEADVVVHVRDMAHPDT 301

Query: 312 -----------KEISFPKNIDFIFI--GTKSDLYSTYTEEYDHLI----------SSFTG 348
                      KE+     +D   +    K DL      E               S+ TG
Sbjct: 302 EAQASDVELVLKELGLGDMVDRGLVEALNKIDLLPEGGREGVVNQAARKPTALPISALTG 361

Query: 349 EGLEELINKIKSILSNKFKKLPFSI 373
            G++  +  I   LS     +  S 
Sbjct: 362 AGVDAFLACIDEKLSENRLIIDVSF 386


>gi|256545410|ref|ZP_05472772.1| GTP-binding protein HflX [Anaerococcus vaginalis ATCC 51170]
 gi|256398806|gb|EEU12421.1| GTP-binding protein HflX [Anaerococcus vaginalis ATCC 51170]
          Length = 411

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 98/264 (37%), Gaps = 28/264 (10%)

Query: 136 SSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T+    ++ +  +         +W   L+     I         E +     + ++ 
Sbjct: 106 RANTKEAKLKIKLAQLK-YQLPRINKWFAYLSRQSGGIGTR---GPGETMLETDKRAIVR 161

Query: 195 DILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAK----KDVAIVTD 249
           DI  L+  +        +    R+    I +LG++NAGKS++ N + K    +      D
Sbjct: 162 DIRSLEEKLKDLEKTKSVNRKSRDKILNISLLGYTNAGKSTILNNMLKIFGKEKYVYSDD 221

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-- 307
           +   T D  T  LD     V ++DT G  +       +    T  E++ +D++L++ +  
Sbjct: 222 LLFATLDTSTRRLDFSNTKVTLTDTVGFIDNLSKELNDSFLTTLEEIKFSDMLLVVIDSS 281

Query: 308 ---------INSKKEISFPKNIDFIFIGTKSD-------LYSTYTEEYDHLISSFTGEGL 351
                    I+   +     N   +++  K D       L     +E    IS+   + +
Sbjct: 282 YDIETQLKTIDKALDDIDVGNKKILYVFNKIDKIENDTLLLGYKRKEEKIYISAKNQDDI 341

Query: 352 EELINKIKSILSNKFKKLPFSIPS 375
            +L  KI  ++ + + K+   IP 
Sbjct: 342 IKLKEKIVDVIKDDYIKVKMKIPY 365


>gi|229544341|ref|ZP_04433400.1| GTP-binding proten HflX [Bacillus coagulans 36D1]
 gi|229325480|gb|EEN91156.1| GTP-binding proten HflX [Bacillus coagulans 36D1]
          Length = 416

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 101/255 (39%), Gaps = 17/255 (6%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
           +L+ +   I        + +      +  +++I      +  H  + +      + ++I 
Sbjct: 142 ELSRLGGGIGTRGPGETQLETDRRHIRRRISEIKAQLETVVHHRERYRERRKKNHVFQIA 201

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDD 282
           ++G++NAGKS+LFN L+  + +   +    T D +T  + L  GY   ++DT G  +   
Sbjct: 202 LVGYTNAGKSTLFNRLSAAN-SYEENQLFATLDPMTRKVVLPSGYTALLTDTVGFIQDLP 260

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF------------IGTKSD 330
                  + T  EV  ADL+L + + ++    +  K +  +             +  K D
Sbjct: 261 TTLIAAFRSTLEEVREADLLLHVIDSSNPDYDNHQKTVQRLLSELEMNHLPQLAVYNKMD 320

Query: 331 LYSTY---TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387
           +  ++     +   +IS+   + +  L+ +I+  +  +       +P  +  L  + ++ 
Sbjct: 321 IKDSHFVPNAQNSIMISAKDEKDIHRLLLEIEKQVLAEMVPYRALVPQTEGKLLSVLKSD 380

Query: 388 RYLEMASLNEKDCGL 402
             L      E++   
Sbjct: 381 TILRELIFKEENEAY 395


>gi|332673692|gb|AEE70509.1| GTP-binding protein Era [Helicobacter pylori 83]
          Length = 301

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDNLKGYEEFLSLCQKPHILAVSKIDTS 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S + 
Sbjct: 128 THKQVLQKLQEYQQYASQFLALVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEE 187

Query: 379 HLYHLSQTVR 388
                 + +R
Sbjct: 188 MCDIYKEIIR 197


>gi|331009765|gb|EGH89821.1| GTP-binding protein HflX [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 433

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 92/253 (36%), Gaps = 25/253 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN++   DV    D    T
Sbjct: 174 QIKGRLEKVRSQRDQARRGRRRADIPSVSLVGYTNAGKSTLFNSVTDSDV-FAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L+    + ++DT G          E  + T  E  N+DL+L + + +  + 
Sbjct: 233 LDPTLRRLQLDDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDSHEPER 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +S              + +  + +  K DL      +             +S+  G GL+
Sbjct: 293 MSQIEQVMAVLGEIGAEGLPILEVYNKLDLLEGVEPQIQRDAEGKPQRVWVSARDGRGLD 352

Query: 353 ELINKIKSILSNK 365
            L   I  +L + 
Sbjct: 353 LLKQAIAELLGDD 365


>gi|145528592|ref|XP_001450090.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124417690|emb|CAK82693.1| unnamed protein product [Paramecium tetraurelia]
          Length = 449

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 7/130 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI-DLDLE-GYLVKISDTAGI 277
             + I+G  N+GKS+  N L  + ++ V++   TT   +     DL+ G  +++ DT G+
Sbjct: 105 LAVSIIGPPNSGKSTFLNQLIGEPISAVSNKSNTTVSEIRGVHTDLKSGVQMELVDTPGV 164

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD---LYST 334
            +      K  + + +  +E+ +++++L +     +IS  KN+       K D   L S 
Sbjct: 165 TKR-YKFSKHFVTKAWDVIEDTNMVIILIDAIKTLDISM-KNVMSRLNKIKVDQEQLKSY 222

Query: 335 YTEEYDHLIS 344
           +  E D   S
Sbjct: 223 FRNEDDFRAS 232


>gi|294675649|ref|YP_003576264.1| ferrous iron transport protein B [Rhodobacter capsulatus SB 1003]
 gi|294474469|gb|ADE83857.1| ferrous iron transport protein B-1 [Rhodobacter capsulatus SB 1003]
          Length = 779

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 11/129 (8%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +  +G+ N GK++LFNAL       V + PG T +  +         V++ D  G    D
Sbjct: 6   VGTVGNPNCGKTTLFNALTGA-RQQVGNWPGVTVERKSGKFRDGTTEVELIDLPGTYSLD 64

Query: 282 ----DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL 331
               D+   E I R F+    AD++L + + ++ +             +  +      D+
Sbjct: 65  ASEGDLSLDEQIARDFVAAREADVVLNIVDASNLERNLYLTAQLLEMKVPVVLAVNMIDI 124

Query: 332 YSTYTEEYD 340
                 + D
Sbjct: 125 AEARGLKLD 133


>gi|257482409|ref|ZP_05636450.1| GTP-binding protein HflX [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 433

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 92/253 (36%), Gaps = 25/253 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN++   DV    D    T
Sbjct: 174 QIKGRLEKVRSQRDQARRGRRRADIPSVSLVGYTNAGKSTLFNSVTDSDV-FAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L+    + ++DT G          E  + T  E  N+DL+L + + +  + 
Sbjct: 233 LDPTLRRLQLDDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDSHEPER 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +S              + +  + +  K DL      +             +S+  G GL+
Sbjct: 293 MSQIEQVMAVLGEIGAEGLPILEVYNKLDLLEGVEPQIQRDADGKPQRVWVSARDGRGLD 352

Query: 353 ELINKIKSILSNK 365
            L   I  +L + 
Sbjct: 353 LLKQAIAELLGDD 365


>gi|150400784|ref|YP_001324550.1| small GTP-binding protein [Methanococcus aeolicus Nankai-3]
 gi|150013487|gb|ABR55938.1| small GTP-binding protein [Methanococcus aeolicus Nankai-3]
          Length = 189

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 34/177 (19%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT---IDLDLEG-------YLV 269
           +KIV++G  N+GKS++ N++  K ++ V+++ GTT+  +      + +           +
Sbjct: 11  FKIVLIGPENSGKSAIINSIFGKYISTVSEVGGTTKMPIKKFWGQIKIGKSKKNPKFAKL 70

Query: 270 KISDTAGI---RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------- 318
              D  G+    +   I+    +  T+ E++NA LI+ + +       SF K        
Sbjct: 71  SFVDLGGLYAGEKKSPIMVGRILDETYKEIDNAHLIIHVVDGKKGLSKSFEKLHHLLKYR 130

Query: 319 -NIDFIFIGTKSDLYSTYT------------EEYDHLISSFTGEGLEELINKIKSIL 362
                I + +KSDL                 E    + S+ T +G+ EL+N I  +L
Sbjct: 131 YQKPIIVVISKSDLIDANNINDLKNHIEKRLENKTIITSTITYQGITELLNTIIELL 187


>gi|57641125|ref|YP_183603.1| GTPase [Thermococcus kodakarensis KOD1]
 gi|57159449|dbj|BAD85379.1| predicted GTPase, containing NOG1 domain [Thermococcus kodakarensis
           KOD1]
          Length = 358

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 26/172 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           +VI GH N GKS+L  AL       V   P TT+ +     +      ++ DT G+ +  
Sbjct: 170 VVIAGHPNVGKSTLLRALTNA-KPEVASYPFTTKGINVGQFEEHYLKYQVIDTPGLLDRP 228

Query: 282 DIVEKEGIKRTFLEVENA-DLILLLKEINSKKEISFPKNI-------------DFIFIGT 327
                E  K+  L +++  D+I+ + + +        + +              FI +  
Sbjct: 229 LSERNEVEKQAILALKHLGDVIVYIFDPSEYCGFPIEEQMHLFEEIYSEFGEFPFIVVLN 288

Query: 328 KSDLYSTYT----EEY-------DHLISSFTGEGLEELINKIKSILSNKFKK 368
           K+D+         EE+          IS+ TGEGL+EL  ++  I+  K ++
Sbjct: 289 KADIADEEKMKTIEEFVKSKGLEPLRISALTGEGLDELKKRVIEIVKPKAEE 340


>gi|238027077|ref|YP_002911308.1| Small GTP-binding protein [Burkholderia glumae BGR1]
 gi|237876271|gb|ACR28604.1| Small GTP-binding protein [Burkholderia glumae BGR1]
          Length = 398

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 86/247 (34%), Gaps = 28/247 (11%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W   L   +  I        + +       E +  +    + +   
Sbjct: 124 LAQLQYLSTRLIRAWTH-LERQKGGIGLRGPGETQLETDRRLIGERIKMLKSRLDKLRRQ 182

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
            +  +          + ++G++NAGKS+LFNAL K   A   D    T D  +  + L  
Sbjct: 183 HNTQRRQRERNRTMSVSLVGYTNAGKSTLFNALTKAQ-AYAADQLFATLDTTSRRVYLGD 241

Query: 267 Y--LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-- 322
               + +SDT G             + T  E  +ADL+L + + +S   +   + ++   
Sbjct: 242 EVGQIVVSDTVGFIRELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNDVL 301

Query: 323 ----------IFIGTKSDLYSTYTEEYD------------HLISSFTGEGLEELINKIKS 360
                     + +  K D         D              +S+ +G+GL+ L + I  
Sbjct: 302 HEIGADAIRQVLVFNKIDAVPELAARGDAVERDEYGNISRVFLSARSGQGLDALRSAIAE 361

Query: 361 ILSNKFK 367
           I ++  +
Sbjct: 362 IATSDQQ 368


>gi|171463193|ref|YP_001797306.1| GTP-binding protein Era [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192731|gb|ACB43692.1| GTP-binding protein Era [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 297

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290
           GKS+L NAL  + ++I +    TTR  +    + E       DT G +        + + 
Sbjct: 2   GKSTLLNALVGQKISITSRKAQTTRHRILGIQNREEAQFIFIDTPGFQTRLMNTLNKALN 61

Query: 291 RTF-LEVENADLILLLKEI-----NSKKEIS-FPKNIDFIFIGTKSDLYSTY 335
           RT    +++ ++   + E      + KK +   P ++  + +  K DL++++
Sbjct: 62  RTVTTALQDVNVACFVVEAGYFGEDDKKVLKLLPDDLPVVLVLNKLDLFNSH 113


>gi|20808269|ref|NP_623440.1| ferrous ion uptake system protein FeoB ( GTPase)
           [Thermoanaerobacter tengcongensis MB4]
 gi|20516869|gb|AAM25044.1| Ferrous ion uptake system protein FeoB (predicted GTPase)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 626

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 66/170 (38%), Gaps = 13/170 (7%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +++++G  N GKS   N L    V IV++ PGTT DV      +     +  DT GI  
Sbjct: 1   MRMLLVGQPNVGKSLFLNTLTGAKV-IVSNYPGTTVDVTEGRTKVGDESWEFVDTPGIYS 59

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
                E+E +    +   N D ++ + +      ++  +N+        ++L   +    
Sbjct: 60  LTPSSEEEKVTYRIVLEGNYDFVIHILDA-----LALERNLIISLQL--AELGVPFMIAV 112

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
           +    +   +G++  +  ++ +L          I   K+ +  L    + 
Sbjct: 113 NFYEEALK-KGMKIDLRALEELLGVPV----VVINPFKKEIEKLKNAFKS 157


>gi|320321883|gb|EFW77979.1| GTP-binding protein HflX [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320331012|gb|EFW86986.1| GTP-binding protein HflX [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330872251|gb|EGH06400.1| GTP-binding protein HflX [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 433

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 92/253 (36%), Gaps = 25/253 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN++   DV    D    T
Sbjct: 174 QIKGRLEKVRSQRDQARRGRRRADIPSVSLVGYTNAGKSTLFNSVTDSDV-FAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L+    + ++DT G          E  + T  E  N+DL+L + + +  + 
Sbjct: 233 LDPTLRRLQLDDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDSHEPER 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +S              + +  + +  K DL      +             +S+  G GL+
Sbjct: 293 MSQIEQVMAVLGEIGAEGLPILEVYNKLDLLEGVEPQIQRDADGKPQRVWVSARDGRGLD 352

Query: 353 ELINKIKSILSNK 365
            L   I  +L + 
Sbjct: 353 LLKQAIAELLGDD 365


>gi|317013934|gb|ADU81370.1| GTPase Era [Helicobacter pylori Gambia94/24]
          Length = 301

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 TRKQVLQKLQEYQKYSSQFLDLVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR 388
                 + +R
Sbjct: 188 MRDIYKEIIR 197


>gi|261823150|ref|YP_003261256.1| GTPase HflX [Pectobacterium wasabiae WPP163]
 gi|261607163|gb|ACX89649.1| GTP-binding proten HflX [Pectobacterium wasabiae WPP163]
          Length = 426

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 97/280 (34%), Gaps = 30/280 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+   +  +   + ++G++NAGKS+LFN +    V    D    T
Sbjct: 173 QILSRLERVEKQREQGRRSRVRADVPTVSLVGYTNAGKSTLFNKITSAGV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     ++++      ++DT G             K T  E   A L+L + +    + 
Sbjct: 232 LDPTLRRIEVDDVGDTVLADTVGFIRQLPHDLVAAFKATLQETRQASLLLHVVDAADPRL 291

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                       EI     I  + +  K D+   +    D           +S+ TG+G+
Sbjct: 292 DENIEAVDDVLAEIE-ADEIPALLVMNKIDMLDDFVPRIDRNEENLPVRVWLSAQTGDGI 350

Query: 352 EELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
             L   +   LS +  +    +P      R  ++  Q + 
Sbjct: 351 PLLFQALTERLSGEIAQHTLHLPPQAGRLRSRFYQLQAIE 390


>gi|238750966|ref|ZP_04612463.1| Predicted GTPase [Yersinia rohdei ATCC 43380]
 gi|238710880|gb|EEQ03101.1| Predicted GTPase [Yersinia rohdei ATCC 43380]
          Length = 287

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 2/105 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G +  GKSSL NAL   +V+ V+D+   TR+ L     + G  + + D  GI E+ 
Sbjct: 39  IGIMGKTGTGKSSLCNALFAGEVSPVSDVAACTREPLRFRFQVGGRFMTLMDLPGIGESG 98

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
               +        ++   DL+L L + + +  ++  ++     IG
Sbjct: 99  ARDTEYAAL-YREQLPRLDLVLWLIKADDRA-LAVDEHFYHKVIG 141


>gi|297559661|ref|YP_003678635.1| GTP-binding proten HflX [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844109|gb|ADH66129.1| GTP-binding proten HflX [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 512

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEII----RNGYKIVILGHSNAGKSSLFNALAKKD 243
             + + + +  L+  + +H+   +  +      R+   + I G++NAGKSSL N L    
Sbjct: 256 DRRRINDKMAKLRRQL-AHMRTARDVKRDVRRTRSVPSVAIAGYTNAGKSSLLNRLTGAG 314

Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
           V +   +  T    +      +G    +SDT G          E  + T  EV ++DL+L
Sbjct: 315 VLVENALFATLDPTVRQARTPDGRGFTLSDTVGFVRHLPHQLVEAFRSTLEEVADSDLVL 374

Query: 304 LLKEINSKK 312
            + + +   
Sbjct: 375 HVVDGSHPD 383


>gi|257386614|ref|YP_003176387.1| GTP-binding protein HSR1-related [Halomicrobium mukohataei DSM
           12286]
 gi|257168921|gb|ACV46680.1| GTP-binding protein HSR1-related [Halomicrobium mukohataei DSM
           12286]
          Length = 329

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 101/263 (38%), Gaps = 19/263 (7%)

Query: 121 GKIDLLEAESLADLISSETEMQRRL-SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
             +D    E    +I+S  E +  + ++     E+     +  D  +  +  +  D D +
Sbjct: 64  DTLDPFYVELADAIITSNVEGEGGIDALRQHLSEVQWASRKAKDIHSEYQGRMTGDADTA 123

Query: 180 EEEDVQNFS-SKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFN 237
            +   Q F+   +++ ++      IS+     K    IR +   IV+ G+ N GKSS  N
Sbjct: 124 RKLRKQAFARMADIVEEVEDDLAGISAARDALKTLPDIRPDEPTIVVAGYPNVGKSSFVN 183

Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
            +           P TT  +    ++ +    ++ DT G+ +  +    +   +    VE
Sbjct: 184 LVTNA-RNETASYPFTTTQIRVGHVERDRIRYQLVDTPGLLDRPEAERNDIESQAVSAVE 242

Query: 298 N-ADLILLLKEINS------------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344
           + AD +L+  + +             +  +    +   + I  K+DL      E DH +S
Sbjct: 243 HLADAVLVFLDASGNCGYPIEVQLELRDALEDRFDAPVLTIANKADLTRDV--EADHYMS 300

Query: 345 SFTGEGLEELINKIKSILSNKFK 367
              G+ ++ +++     +  + +
Sbjct: 301 VTEGDNVDGVLDAAIEAVGYEIE 323


>gi|119587224|gb|EAW66820.1| GTP binding protein 6 (putative) [Homo sapiens]
          Length = 267

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 92/251 (36%), Gaps = 27/251 (10%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGK---LGEIIRNGYKIVILGHSNAGKSSLFNA 238
           E       + +      ++  +     +          R    I ++G++N GK++L  A
Sbjct: 5   ESFMQLQQRLLREKEAKIRKALDRLRKKRHLLCRQRTRREFPVISVVGYTNCGKTTLIKA 64

Query: 239 LAKKDVAIV-TDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRETDDIVEKEGIKRTFLEV 296
           L   D AI   D    T DV      L   +  +  DT G          E    T  +V
Sbjct: 65  LTG-DAAIQPRDQLFATLDVTAHAGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDV 123

Query: 297 ENADLILLLKEINSKK---------------EISFPKNIDFIFIGTKSDLYSTY--TEEY 339
            ++DLIL +++++  +               ++  P     + +  K DL   Y  TE  
Sbjct: 124 AHSDLILHVRDVSHPEAELQKCSVLSTLRGLQLPAPLLDSMVEVHNKVDLVPGYSPTEPN 183

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
              +S+  G GL+EL  ++ + +     +   ++    R     +Q     + A++ E D
Sbjct: 184 VVPVSALRGHGLQELKAELDAAVLKATGRQILTL----RVRLAGAQLSWLYKEATVQEVD 239

Query: 400 CGLDIIAENLR 410
              +  A ++R
Sbjct: 240 VIPEDGAADVR 250


>gi|194758196|ref|XP_001961348.1| GF11042 [Drosophila ananassae]
 gi|190622646|gb|EDV38170.1| GF11042 [Drosophila ananassae]
          Length = 381

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 15/148 (10%)

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            ++  +    +             I ++G  N GKS+  N +    V   +    TTR  
Sbjct: 38  TVEQSVRQFPADPSGRSKTERSLHIAVIGVPNVGKSTFINHIVNHKVCPTSTKVHTTRQS 97

Query: 258 LTIDLDLEGYLVKISDTAGI---RETDDIVEKEGIKRTFL-EVENADLILLLKEINSK-- 311
            T         +   DT G+   RE      ++  K  +   ++NAD+I ++ + ++   
Sbjct: 98  NTAICTQGQTQLVFYDTPGLVTQREIRKHHLEQSFKSAYRHAIQNADVIAVIHDASNGWT 157

Query: 312 ---------KEISFPKNIDFIFIGTKSD 330
                      +    N+    +  K D
Sbjct: 158 RNELHPTVLDTLKSYANLPSFLVLNKID 185


>gi|1200211|emb|CAA78148.1| thdF [Borrelia burgdorferi]
          Length = 35

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440
           A +       LG+ITG V  E +LD +F  FC+GK
Sbjct: 1   AFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 35


>gi|323698496|ref|ZP_08110408.1| GTP-binding proten HflX [Desulfovibrio sp. ND132]
 gi|323458428|gb|EGB14293.1| GTP-binding proten HflX [Desulfovibrio desulfuricans ND132]
          Length = 557

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 3/167 (1%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           M  +   L  L G+    ++ +   I        + ++    + + L  +      +  H
Sbjct: 317 MAQLKYTLPRLVGKNR-AMSRLMGGIGGRGPGETKLEIDRRRANDRLTRLKDELKQVRRH 375

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-E 265
            SQ +          + ++G++NAGKS+L N L      +  D    T D  +  +   E
Sbjct: 376 RSQTRERRAKAGLPVVSLVGYTNAGKSTLLNTLT-SSRVLAEDKLFATLDPTSRRIRFPE 434

Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
              V ++DT G         KE  + T  E+++ADL++L+ + +  +
Sbjct: 435 EREVVLTDTVGFIRRLPPDLKEAFRATLEELDSADLLVLVCDASHPE 481


>gi|238796736|ref|ZP_04640242.1| GTP-binding protein era [Yersinia mollaretii ATCC 43969]
 gi|238719467|gb|EEQ11277.1| GTP-binding protein era [Yersinia mollaretii ATCC 43969]
          Length = 284

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 70/190 (36%), Gaps = 22/190 (11%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGI 289
           GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E    + +   
Sbjct: 2   GKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEEKRAINRLMN 61

Query: 290 KRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL 342
           +     + + +L++ + E     +  E+   K    +   +    K D  +  ++   H+
Sbjct: 62  RAASSSLGDVELVIFVVEGTNWTADDEMVVNKLRSLDCPVLLAINKVDNVTDKSKLLPHI 121

Query: 343 I--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
                          S+  G  ++ + + ++ ++       P    + +   +  S+ +R
Sbjct: 122 QFLSQQMNFLDVVPISAEKGMNVDTIASIVRKLMPEAEHHFPEDYITDRSQRFMASEIIR 181

Query: 389 YLEMASLNEK 398
              M  L E+
Sbjct: 182 EKLMRFLGEE 191


>gi|227498680|ref|ZP_03928824.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904136|gb|EEH90054.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 717

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 22/189 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           YKI + G+ N GK++LFNAL   +   V + PG T +     L +    + I D  GI  
Sbjct: 3   YKIALAGNPNTGKTTLFNALTGSNQ-FVGNWPGVTVEKKEGTL-IGHPEILIQDLPGIYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------------ISFPKNIDFIFI 325
                 +E + RT+L  E  D IL + + ++ +               +    N+  +  
Sbjct: 61  LSPYTLEEVVSRTYLVKERPDAILNIVDGSNLERNLYLTTQLMELGIPVLMAVNMMDVTR 120

Query: 326 GTKSDLYSTYTEEYDHLI----SSFTGEGLEELINKIKSILSNKFKKLPF-SIPSHKRH- 379
                LY+    +         S+ TGEG++ L+ K   ++  K    P  +      H 
Sbjct: 121 ANGDILYTEVLAKSIGCPVVEISARTGEGIKTLVQKAAQMVQAKVPAEPIHTFAGPVEHA 180

Query: 380 LYHLSQTVR 388
           L H+ +  +
Sbjct: 181 LAHIEEATQ 189


>gi|254427841|ref|ZP_05041548.1| GTP-binding proten HflX [Alcanivorax sp. DG881]
 gi|196194010|gb|EDX88969.1| GTP-binding proten HflX [Alcanivorax sp. DG881]
          Length = 457

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 102/290 (35%), Gaps = 25/290 (8%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T   R    +  +    S L   W   L   +  I        + +      ++ + 
Sbjct: 121 RARTHEGRLQVELAQLRHLSSRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDRIR 179

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I    + +    +QG+          I ++G++NAGKS+LFNA+   DV  V D    T
Sbjct: 180 GIESRLDKVRKQRAQGRRARQRSETPLISLVGYTNAGKSTLFNAITTGDV-YVADQLFAT 238

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     + + G     ++DT G          +  + T  E  NA L+L + + ++++ 
Sbjct: 239 LDPTLRKVKVPGVGPAILADTVGFIRHLPHRLVQAFRATLEETVNATLLLHVTDCSAEER 298

Query: 314 ISFP------------KNIDFIFIGTKSD--------LYSTYTEEYDHLISSFTGEGLEE 353
            S                +  + +  K D            + + +   IS+ TG+G + 
Sbjct: 299 DSNVAAVDEVLEEIGGDKLPVLHVYNKVDNLDQPPRIERDEHGQPWRVWISAQTGDGFDL 358

Query: 354 LINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLEMASLNEKDCGL 402
           L   I   L+  +      +P+   R    L +    LE  +  +    L
Sbjct: 359 LFEAIAERLAAGWVDCWVRLPASAGRLRARLHEAGEVLEEQTATDGSMLL 408


>gi|297709285|ref|XP_002831367.1| PREDICTED: putative GTP-binding protein 6-like, partial [Pongo
           abelii]
          Length = 274

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 93/251 (37%), Gaps = 27/251 (10%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNA 238
           E       + +      ++  +     +    +     R    I ++G++N GK++L  A
Sbjct: 12  ESFMQLQQRLLREKEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIKA 71

Query: 239 LAKKDVAIV-TDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRETDDIVEKEGIKRTFLEV 296
           L   D AI   D    T DV      L   +  +  DT G          E    T  +V
Sbjct: 72  LTG-DAAIQPRDQLFATLDVTAHAGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDV 130

Query: 297 ENADLILLLKEINSKK---------------EISFPKNIDFIFIGTKSDLYSTY--TEEY 339
            ++DLIL +++I+  +               ++  P     + I  K DL   Y  TE  
Sbjct: 131 AHSDLILHVRDISHPEAELQKCSVLSTLRGLQLPAPLLDSMVEIHNKVDLVPGYSPTEPN 190

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
              +S+  G GL+EL  ++ + +     +   ++    R     +Q     + A++ E D
Sbjct: 191 VVPVSALRGHGLQELKAELDAAVLKATGRQILTL----RVRLAGAQLSWLHKEATVQEVD 246

Query: 400 CGLDIIAENLR 410
              +  A ++R
Sbjct: 247 VIPEDGAADVR 257


>gi|260909635|ref|ZP_05916332.1| ferrous iron transporter B [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636246|gb|EEX54239.1| ferrous iron transporter B [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 717

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 73/190 (38%), Gaps = 23/190 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
             + + + G+ N GKS++FNAL         + PG T          +G   +I D  G 
Sbjct: 31  ERFVVALAGNPNTGKSTVFNALTGLKQ-HTGNWPGKTVGKAEGYFAYQGEGYRIVDLPGT 89

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------EISFPKNIDFIFI-- 325
                  E E I R F+     D+ +++ +    +          +I+    +    +  
Sbjct: 90  YSLSSTSEDEEIARDFILFGQPDVTVMVADATRLERNMNLILQVLQITDKAVLCVNLLDE 149

Query: 326 --GTKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK---KLPFSIPSH 376
               K D+     S          S+ +G+G++ L+  ++ +   ++K       ++P H
Sbjct: 150 AKRNKIDINLNALSRRLGIPVVGASARSGQGIDLLLESMRQVAMGEYKCRPHRSTNLPPH 209

Query: 377 -KRHLYHLSQ 385
             +H+  L++
Sbjct: 210 AAQHIKELAR 219


>gi|89898550|ref|YP_515660.1| GTP-binding protein [Chlamydophila felis Fe/C-56]
 gi|89331922|dbj|BAE81515.1| GTP-binding protein [Chlamydophila felis Fe/C-56]
          Length = 452

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 22/229 (9%)

Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221
             K            +  ++ ++     +E ++ +      +     + +  +  R    
Sbjct: 170 RQKSGGGSGGGFVKGEGEKQIELDRRMIRERIHKLTSDLKAVEKQRKERRKAKEKRGIPS 229

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
             ++G++N+GKS+L N L   +     D    T D  T    L  G  V ++DT G    
Sbjct: 230 FALIGYTNSGKSTLLNLLTSAE-TYAEDKLFATLDPKTRRCVLPCGQRVLVTDTVGFIRK 288

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGTK 328
                    K T     + D++L + + +                    ++   I +  K
Sbjct: 289 LPHALVAAFKSTLEAALHEDVLLHVVDASHPLAFEHVETTKGILQDLGIEHPKIITVLNK 348

Query: 329 SDLYST--------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
            D                   L+S+ TGEG+  L+  +  +++    ++
Sbjct: 349 IDELPEGKVPAKLRLLSPRAVLVSAKTGEGIPNLLEAMTEVITEGCPEV 397


>gi|172056213|ref|YP_001812673.1| small GTP-binding protein [Exiguobacterium sibiricum 255-15]
 gi|171988734|gb|ACB59656.1| small GTP-binding protein [Exiguobacterium sibiricum 255-15]
          Length = 350

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 78/213 (36%), Gaps = 33/213 (15%)

Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEI------IRNGYKIVILGHSNAGKSSLFN 237
           + +F  + +  +    K  +     Q    E       +     + ++G  NAGKSS  N
Sbjct: 1   MDDFFGEGLETNEQKRKRKLEEVFDQSFESERRDFNQSLEQEVTVALIGDVNAGKSSTLN 60

Query: 238 ALAKKDVAIVTDIPG-TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296
           A+  ++VA V   PG TTR  +          V   DT G+ + + +        T+   
Sbjct: 61  AILGREVATVGAKPGETTR--IDQIRQHPEDKVVFVDTPGLNDANSLNSDT----TWKFY 114

Query: 297 ENADLILLLKEI-----NSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDH------ 341
           ++AD+IL          +  +  +F K    N + + + TK D  +       H      
Sbjct: 115 QSADVILYFLNAAGTVLSETETKNFKKIYAHNKNIVIVVTKIDATNDLATILSHIELQLP 174

Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKL 369
                 +S+  G  ++ L  ++  IL    K  
Sbjct: 175 GPKVVPVSALDGTNIDRLRREVLDILKKFNKDN 207


>gi|237748423|ref|ZP_04578903.1| ferrous iron transporter B [Oxalobacter formigenes OXCC13]
 gi|229379785|gb|EEO29876.1| ferrous iron transporter B [Oxalobacter formigenes OXCC13]
          Length = 722

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 24/196 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I + G+ NAGK++LFNAL     + V + PG T +     L      V ++D  GI  
Sbjct: 7   IRIALAGNPNAGKTTLFNALTGARQS-VGNWPGVTVEKKEGRLKNR-PDVTVTDLPGIYS 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGT 327
                 +E I R +L  E  D+IL + +  + +             I     I+ + +  
Sbjct: 65  LSPYSLEEIIARNYLLDEKPDVILNIVDGTNLERNLYLTTQLLELGIPVVVAINMMDVLA 124

Query: 328 KS-DLYSTYTEEYDHLI-----SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           KS DL  T   E +        S+    G+ E + K  +      +          R   
Sbjct: 125 KSGDLIDTDLLEKELGCEVTGISALKETGVAEAVEKALA----SAQDPDAVPVPRHRFSG 180

Query: 382 HLSQTVRYLEMASLNE 397
            +   + ++E A L++
Sbjct: 181 SVEHALAHIEEAVLHD 196


>gi|307595507|ref|YP_003901824.1| small GTP-binding protein [Vulcanisaeta distributa DSM 14429]
 gi|307550708|gb|ADN50773.1| small GTP-binding protein [Vulcanisaeta distributa DSM 14429]
          Length = 666

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 25/207 (12%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N  K++I G  N GKS++ + L+   + I  + PGTT  +  ++ ++ G  V I D  G 
Sbjct: 4   NNIKVLIAGIPNCGKSTIVSELSGVTIRI-ANYPGTTVSINRVEYNINGIKVSIIDLPGT 62

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS------FPKNIDFIFIGTKSDL 331
                 +  E +    +   + D I+++      ++               I +    DL
Sbjct: 63  YSLRANMVDESVAAREILRGDYDGIIVVGSALDPEQTLYLLIQVLELGKPVILVLNMMDL 122

Query: 332 YSTYTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            S    +YD                +  G GL +L N I  I              H  +
Sbjct: 123 ASRRGFQYDIEGLSKALGIPVLPTVAAKGAGLSKLKNMIIKIYELGQGNT------HIIN 176

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIA 406
              L + +  L       +   +++I+
Sbjct: 177 YGKLEKYIETLSNTLGISRGLAIEVIS 203


>gi|257058186|ref|YP_003136074.1| GTP-binding proten HflX [Cyanothece sp. PCC 8802]
 gi|256588352|gb|ACU99238.1| GTP-binding proten HflX [Cyanothece sp. PCC 8802]
          Length = 564

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 26/186 (13%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA----IVTDIPGTTRD 256
           N + +H S+ +     +    + I+G++NAGKS+L NAL K DV     +   +  TTR 
Sbjct: 376 NQLQAHRSRLRHQRQQQEVPSVAIVGYTNAGKSTLINALTKADVYTADQLFATLDPTTRR 435

Query: 257 V-LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
           + +      E   + ++DT G          +  + T  EV  AD +L + +++      
Sbjct: 436 LQVVEPTTGESTTLLLTDTVGFIHELPPSLVDAFRATLEEVTEADALLHVVDLSHPAWEH 495

Query: 312 ---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH-------LISSFTGEGLEELI 355
                    +EIS    +       K D   + T E           IS+  G GLE L 
Sbjct: 496 QIESVMTILEEISLTPGVIL-LAFNKIDQVDSDTLERAKLNYPEAVFISAQQGFGLETLR 554

Query: 356 NKIKSI 361
            ++  +
Sbjct: 555 QQLVRV 560


>gi|321315513|ref|YP_004207800.1| putative GTP-binding protein protease modulator [Bacillus subtilis
           BSn5]
 gi|320021787|gb|ADV96773.1| putative GTP-binding protein protease modulator [Bacillus subtilis
           BSn5]
          Length = 420

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 122/338 (36%), Gaps = 43/338 (12%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSM-------EGMSGELSSLYGQWIDKL------- 165
           N ++   + +SLA  I  +   + +L +           G+L     Q    L       
Sbjct: 84  NDELSPSQLKSLATAIEVKMIDRTQLILDIFAKRARTREGKLQIELAQLQYALPRLTGQG 143

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII--RNG-YKI 222
            ++             E       + + N I  +   +S+ I           +NG  +I
Sbjct: 144 INLSRQGGGIGARGPGETKLETDRRHIRNRIHEINTQLSTVIRHRSRYRERRKKNGVLQI 203

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+ FN L   D +   D+   T D +T  + L  GY V ++DT G  +  
Sbjct: 204 ALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLTDTVGFIQDL 262

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTKS 329
                   + T  EV+ ADLIL L + +++             E     +I  +    K 
Sbjct: 263 PTTLIAAFRSTLEEVKEADLILHLIDSSNEDYAGHEKTVLRLLEELEADDIPMLTAYNKR 322

Query: 330 D--LYSTYTEE-YDHLISSFTGE-GLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLS 384
           D  L         DH++ S   E         I+  L  +        +P+ +  L    
Sbjct: 323 DQKLPDFIPSAGRDHIMVSAKFEDDAAAFKEAIQRYLRQELLTSFEAHVPASEGKLLSRI 382

Query: 385 QTVRYLEMASLNEKDCGLDI---IAENLRLASVSLGKI 419
           ++   ++    NE++   DI   + E        +G++
Sbjct: 383 KSETMVDRFYFNEENEQYDISGYVQEE----QSIIGEL 416


>gi|309782315|ref|ZP_07677042.1| GTP-binding protein HflX [Ralstonia sp. 5_7_47FAA]
 gi|308918933|gb|EFP64603.1| GTP-binding protein HflX [Ralstonia sp. 5_7_47FAA]
          Length = 402

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 29/203 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + +      L +++     Q       R   + + + ++G++NAGKS+LFNAL K 
Sbjct: 150 ELDRRMLDERAKRLSSELDKLQRQHDTQRRSRSRNDAFSVSLVGYTNAGKSTLFNALTKA 209

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
             A   +    T D  +  L LEG   V +SDT G             + T  E  +AD+
Sbjct: 210 -RAYAANQLFATLDTTSRRLYLEGLGNVVLSDTVGFIRDLPTQLVAAFRATLEETVHADV 268

Query: 302 ILLLKE------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD--------- 340
           +L + +            ++   +      I  I +  K D                   
Sbjct: 269 LLHVVDAASTVKHEQMEQVDRVLDEIDASGIPQILVMNKIDAAEELRVAGPRIERDETGA 328

Query: 341 ---HLISSFTGEGLEELINKIKS 360
                +S+  G GL+ L   +  
Sbjct: 329 VRRVFVSAIEGTGLDLLREALVE 351


>gi|294496518|ref|YP_003543011.1| nucleolar GTP-binding-1 domain protein [Methanohalophilus mahii DSM
           5219]
 gi|292667517|gb|ADE37366.1| Nucleolar GTP-binding-1 domain protein [Methanohalophilus mahii DSM
           5219]
          Length = 316

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 18/152 (11%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R    IV+ G+ N GKSS   A+       V   P TT+ V            ++ DT 
Sbjct: 156 VREEPTIVVAGYPNVGKSSFVAAVTDA-RPEVASYPFTTKGVTIGHFMRGYNRYQVIDTP 214

Query: 276 GI--RETDDIVEKEGIKRTFLEVENAD-LILLLKEINS------KKEISFPKNI------ 320
           G+  R   D  E E   +    ++  D +++ + + +        +++    ++      
Sbjct: 215 GLLDRPMSDRNEVEM--QAITALKYLDAVVIFILDPSETCGYEISQQVKLLDDVRNNFGL 272

Query: 321 DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352
             +    K DL+   T + D  +S+ +GEG++
Sbjct: 273 PVLVAANKLDLFENNTVKVDIEMSTLSGEGID 304


>gi|262275154|ref|ZP_06052965.1| GTP-binding protein HflX [Grimontia hollisae CIP 101886]
 gi|262221717|gb|EEY73031.1| GTP-binding protein HflX [Grimontia hollisae CIP 101886]
          Length = 429

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 111/343 (32%), Gaps = 50/343 (14%)

Query: 45  PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN 104
            R+A    +F  +G+ L+   ++        TG D      H         LE L K   
Sbjct: 48  SRQAPHSKYFVGEGKALEIADVVRM------TGADIV-IFNHALSPAQERNLERLVK--- 97

Query: 105 LRLANPGEFSRRAFENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWID 163
            R+ +        F                  + T E + ++ +  +    + L   W  
Sbjct: 98  CRVLDRTGLILDIFAQ---------------RARTHEGKLQVELAQLRHLSTRLVRGWTH 142

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
            L   +  I        + +      ++ +  IL     +S    QG+          + 
Sbjct: 143 -LERQKGGIGLRGPGETQLETDRRLLRDRVKAILRRLEKVSKQREQGRRARSRAEVPTVS 201

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDD 282
           ++G++NAGKS+LFN + +  V    D    T D     +++E      ++DT G      
Sbjct: 202 LVGYTNAGKSTLFNRITEAGV-YAADQLFATLDPTLRKIEVEDVGDTILADTVGFIRHLP 260

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTKSD 330
                  K T  E + A L+L + + +  +            E      +  + +  K D
Sbjct: 261 HDLVAAFKATLQETQEATLLLHVVDASDDRFRENIDAVNVVLEEIDAHEVPMLLVMNKID 320

Query: 331 LYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSN 364
                T   +           +S+   +G++ L   +   L+ 
Sbjct: 321 NMEDTTPRIERDEDGLPRIVWVSALADQGIDLLFEALTERLAG 363


>gi|242237988|ref|YP_002986169.1| GTPase HflX [Dickeya dadantii Ech703]
 gi|242130045|gb|ACS84347.1| GTP-binding proten HflX [Dickeya dadantii Ech703]
          Length = 426

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 94/279 (33%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+      +   + ++G++NAGKS+LFN +    V    D    T
Sbjct: 173 QILSRLEKVEKQREQGRRARTRADVPTVSLVGYTNAGKSTLFNNMTAAGV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +++E      ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIEVEDVGDTVLADTVGFIRQLPHDLVAAFKATLQETREATLLLHIVDAADSRA 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N          I  + I  K D+   +    D           +S+ TGEG+ 
Sbjct: 292 SDNIQAVNDVLAEIEADKIPVLLIMNKIDMLDQFEPRIDRNEDNLPIRVWLSAQTGEGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            L   +   L+ +       +P      R  ++  Q + 
Sbjct: 352 LLFQALCERLAGEIAHYSLHLPPQAGRLRSRFYQLQAIE 390


>gi|304439411|ref|ZP_07399322.1| FeoB family ferrous iron (Fe2+) uptake protein [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372107|gb|EFM25702.1| FeoB family ferrous iron (Fe2+) uptake protein [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 712

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 20/189 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ N+GKS+LFNAL   +   V + PG T +  T     E   V I+D  GI  
Sbjct: 3   ITIALAGNPNSGKSTLFNALTGSNQ-YVGNWPGVTVEKKTGLYKKE-KDVAITDLPGIYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYS 333
                 +E + R +L  E  D+I+ + +  + +   +         I  +      D+  
Sbjct: 61  LSPYTLEEVVSRDYLINEKVDVIIDVVDGTNIERNLYLATQLSELGIPLVIALNMMDVVR 120

Query: 334 TYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
              +  D               S+  GE ++ L+   KS    K +++       +++L 
Sbjct: 121 KNKDYIDVAQIEKRLGCKVVEISALKGENIDHLVEVAKSFKGQKTEEMKTFGEDVEKYLT 180

Query: 382 HLSQTVRYL 390
            + + V  +
Sbjct: 181 EIEEAVASI 189


>gi|237798279|ref|ZP_04586740.1| GTP-binding protein HflX [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021131|gb|EGI01188.1| GTP-binding protein HflX [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 433

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 91/253 (35%), Gaps = 25/253 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN++   DV    D    T
Sbjct: 174 QIKGRLEKVRSQRDQARRGRRRADIPSVSLVGYTNAGKSTLFNSVTDSDV-FAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L+    + ++DT G          E  + T  E  N+DL+L + + +    
Sbjct: 233 LDPTLRRLQLDDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDSHEPDR 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +S              + +  + +  K DL      +             +S+  G GL+
Sbjct: 293 MSQIEQVMAVLGEIGAEGLPILEVYNKLDLLEGVEPQIQRDADGKPQRVWVSARDGRGLD 352

Query: 353 ELINKIKSILSNK 365
            L   I  +L N 
Sbjct: 353 LLKQAIAELLGND 365


>gi|194098785|ref|YP_002001847.1| GTP-binding protein [Neisseria gonorrhoeae NCCP11945]
 gi|254493855|ref|ZP_05107026.1| GTP-binding protein [Neisseria gonorrhoeae 1291]
 gi|268594915|ref|ZP_06129082.1| GTP-binding protein [Neisseria gonorrhoeae 35/02]
 gi|268596706|ref|ZP_06130873.1| GTP-binding protein [Neisseria gonorrhoeae FA19]
 gi|268599139|ref|ZP_06133306.1| GTP-binding protein [Neisseria gonorrhoeae MS11]
 gi|268682287|ref|ZP_06149149.1| GTP-binding protein [Neisseria gonorrhoeae PID332]
 gi|268684445|ref|ZP_06151307.1| GTP-binding protein [Neisseria gonorrhoeae SK-92-679]
 gi|193934075|gb|ACF29899.1| GTP-binding protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512895|gb|EEH62240.1| GTP-binding protein [Neisseria gonorrhoeae 1291]
 gi|268548304|gb|EEZ43722.1| GTP-binding protein [Neisseria gonorrhoeae 35/02]
 gi|268550494|gb|EEZ45513.1| GTP-binding protein [Neisseria gonorrhoeae FA19]
 gi|268583270|gb|EEZ47946.1| GTP-binding protein [Neisseria gonorrhoeae MS11]
 gi|268622571|gb|EEZ54971.1| GTP-binding protein [Neisseria gonorrhoeae PID332]
 gi|268624729|gb|EEZ57129.1| GTP-binding protein [Neisseria gonorrhoeae SK-92-679]
          Length = 392

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 71/213 (33%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDV 244
             +   + I  LK  +++   Q  L    R   +I    ++G++N GKSSLFN L K  +
Sbjct: 180 DRRLTAHRINALKKQLANLKKQRALRRKSRESGRIKTFALVGYTNVGKSSLFNRLTKSGI 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 240 YAKDQLFATLDTTARRLYISPACSIILTDTVGFVSDLPHKLISAFSATLEETAQADVLLH 299

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 300 VVDAAAPNSGQQIEDVENVLQEIHAHDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 360 RISVAENTGIDALREAIAEYCAAAPNTDETEMP 392


>gi|83855026|ref|ZP_00948556.1| GTP-binding protein Era [Sulfitobacter sp. NAS-14.1]
 gi|83941549|ref|ZP_00954011.1| GTP-binding protein Era [Sulfitobacter sp. EE-36]
 gi|83842869|gb|EAP82036.1| GTP-binding protein Era [Sulfitobacter sp. NAS-14.1]
 gi|83847369|gb|EAP85244.1| GTP-binding protein Era [Sulfitobacter sp. EE-36]
          Length = 302

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 66/172 (38%), Gaps = 24/172 (13%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGESQLVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           + +    +++  +   +    +AD+++LL E N           +      +        
Sbjct: 63  LFQPRRRLDRAMVAAAWGGAADADVVILLIEANRGITEGVERILEGLADIGQGRKVALAI 122

Query: 327 TKSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNK 365
            K D         L     + YD     +IS+  G G++ L + +   L   
Sbjct: 123 NKIDRVEAPVLLGLSKEMNDRYDFAETFMISAERGHGVDTLRHWLAGELPEG 174


>gi|149916653|ref|ZP_01905155.1| GTP-binding protein [Plesiocystis pacifica SIR-1]
 gi|149822370|gb|EDM81759.1| GTP-binding protein [Plesiocystis pacifica SIR-1]
          Length = 465

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 87/232 (37%), Gaps = 23/232 (9%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGY----KIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
             L+  ++      + G+  R G     ++ ++G++NAGK+SL NAL + +++   D+P 
Sbjct: 215 AELRRQVARL---ERAGQRQREGRASCGRVALVGYTNAGKTSLMNALTQAELS-ARDMPF 270

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
            T D  T  L   G  V ISDT G             + T  E+  A ++ ++ +++  +
Sbjct: 271 ETLDTTTRSLTRHGGDVIISDTVGFIRRLPQRLLASFETTLAEIREASVVCVVVDLSDPE 330

Query: 313 EISFPKNID------------FIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELINKIK 359
                                 +++  K D L          L +   G     L    +
Sbjct: 331 WDMHLDTTHALLERLGAGALARVYVFNKLDKLAPAERPRPAVLEACAQGHAHWALSAHDE 390

Query: 360 SILSN-KFKKLPFSIPSHKRHLYHL-SQTVRYLEMASLNEKDCGLDIIAENL 409
             +++ +   +  + P H+R    L       +     + +    + IAE L
Sbjct: 391 DAVASVRAALIDAARPHHRRARVRLPYAASEAISAVYAHCRLLSSEAIAEGL 442


>gi|330971556|gb|EGH71622.1| GTP-binding protein HflX [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 433

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 91/253 (35%), Gaps = 25/253 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN++   DV    D    T
Sbjct: 174 QIKGRLEKVRSQRDQARRGRRRADIPSVSLVGYTNAGKSTLFNSVTDSDV-FAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L+    + ++DT G          E  + T  E  N+DL+L + + +    
Sbjct: 233 LDPTLRRLQLDDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDSHEPDR 292

Query: 314 ISFPKNIDFIF------------IGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +S  + +  +             +  K DL      +             +S+  G GL+
Sbjct: 293 MSQIEQVMVVLGEIGAEGLPILEVYNKLDLLEGVEPQIQRDADGKPQRVWVSARDGRGLD 352

Query: 353 ELINKIKSILSNK 365
            L   I  +L + 
Sbjct: 353 LLKQAIAELLGDD 365


>gi|329728031|gb|EGG64475.1| GTP-binding protein HflX [Staphylococcus epidermidis VCU144]
          Length = 413

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 81/211 (38%), Gaps = 16/211 (7%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + +     ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSREGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        ++I ++G++NAGKSS FN LA ++     +I   
Sbjct: 180 NEIKHQLKTVVDHRERYRNKREQNQVFQIALVGYTNAGKSSWFNVLANEE-TYEKNILFA 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T  + + EG+ + ISDT G  +          K T  E + AD+++ + + +  +
Sbjct: 239 TLDPKTRQIQVNEGFNLIISDTVGFIQKLPTTLVAAFKSTLEEAKGADVLMHVVDASHSE 298

Query: 313 ------------EISFPKNIDFIFIGTKSDL 331
                             +I  + I  K DL
Sbjct: 299 YRTQIDTVNQIINDLDMDHIPQVVIFNKKDL 329


>gi|169824673|ref|YP_001692284.1| ferrous iron transport protein B [Finegoldia magna ATCC 29328]
 gi|167831478|dbj|BAG08394.1| ferrous iron transport protein B [Finegoldia magna ATCC 29328]
          Length = 673

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I +LG  N+GKS+LFN L   +   V + PG T +    +   +     I D  G   
Sbjct: 4   ITIALLGQPNSGKSTLFNGLTGSNQ-HVGNWPGKTVEKKEGEFSYKDTNYTIVDLPGTYG 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYS 333
                E+E I R ++E  N+DLI ++ + +      F        NI  + I    D+ +
Sbjct: 63  LSANSEEEVITREYIETGNSDLIAIMADASQLNRSLFMLSDYIGINIPVVLIMNMMDVAT 122

Query: 334 TYTEEYDH 341
           +  +  + 
Sbjct: 123 SQGKNINI 130


>gi|293392453|ref|ZP_06636774.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291425042|gb|EFE98250.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 291

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G +  GKSSL NAL + +V  V+D+   TRDVL + L    + + + D  G+ E++
Sbjct: 39  IGIMGKTGVGKSSLCNALFQGEVTPVSDVQACTRDVLRLRLSSGEHSLILVDLPGVGESE 98

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSKK 312
               E E + R    +   DLIL + + + + 
Sbjct: 99  QRDKEYESLYRHI--LPELDLILWVIKADDRA 128


>gi|221309623|ref|ZP_03591470.1| YnbA [Bacillus subtilis subsp. subtilis str. 168]
 gi|221323141|ref|ZP_03604435.1| YnbA [Bacillus subtilis subsp. subtilis str. SMY]
 gi|255767409|ref|NP_389625.2| GTP-binding protein protease modulator [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|238054339|sp|P94478|YNBA_BACSU RecName: Full=Putative GTP-binding protein ynbA
 gi|225185036|emb|CAB13627.2| putative GTP-binding protein protease modulator [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 420

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 69/338 (20%), Positives = 123/338 (36%), Gaps = 43/338 (12%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSM-------EGMSGELSSLYGQWIDKL------- 165
           N ++   + +SLA  I  +   + +L +           G+L     Q    L       
Sbjct: 84  NDELSPSQLKSLATAIEVKMIDRTQLILDIFAKRARTREGKLQIELAQLQYALPRLTGQG 143

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII--RNG-YKI 222
            ++             E       + + N I  +   +S+ I           +NG  +I
Sbjct: 144 INLSRQGGGIGARGPGETKLETDRRHIRNRIHEINTQLSTVIRHRSRYRERRKKNGVLQI 203

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+ FN L   D +   D+   T D +T  + L  GY V +SDT G  +  
Sbjct: 204 ALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLSDTVGFIQDL 262

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTKS 329
                   + T  EV+ ADLIL L + +++             E     +I  +    K 
Sbjct: 263 PTTLIAAFRSTLEEVKEADLILHLIDSSNEDYAGHEKTVLRLLEELEADDIPMLTAYNKR 322

Query: 330 D--LYSTY-TEEYDHLISSFTGE-GLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLS 384
           D  L     T   DH++ S   E         I+  L  +        +P+ +  L    
Sbjct: 323 DQKLPDFIPTAGRDHIMVSAKFEDDAAAFKEAIQRYLRQELLTSFEAHVPASEGKLLSRI 382

Query: 385 QTVRYLEMASLNEKDCGLDI---IAENLRLASVSLGKI 419
           ++   ++    NE++   DI   + E        +G++
Sbjct: 383 KSETMVDRFYFNEENEQYDISGYVQEE----QSIIGEL 416


>gi|221132207|ref|XP_002155788.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 321

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 45/200 (22%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ ILG  NAGKS+L NA     V+ V++I  TTR V     ++    +  +DT GI  
Sbjct: 21  LKVAILGAPNAGKSTLINAAVGSRVSAVSEIKHTTRTVANGIKNIGNCQIIFTDTPGIVS 80

Query: 280 TDDIVEKEGIKRT-----FLEVENADLILLLKEINSKKEISFPKNI-----------DFI 323
            ++        R           +AD++ ++ ++ SKK  +F                 I
Sbjct: 81  FEEGHRLNM-DRAHLRGPRRVAGSADMLAIITDVASKKTRNFIDENIIEIMNSNLEVPAI 139

Query: 324 FIGTKSDLYSTYTEEYD----------------------------HLISSFTGEGLEELI 355
            I  K DL     +                                +IS+F+G+G+++L+
Sbjct: 140 LILNKIDLLKRKEDLIPVASMLMQKRTKDVWGYHSYGGSERFQKCFMISAFSGDGVDDLL 199

Query: 356 NKIKSILSNKFKKLPFSIPS 375
           + + +   +   +    I  
Sbjct: 200 DYLVASSKSGAWEYSDQIYC 219


>gi|194476719|ref|YP_002048898.1| ferrous iron transport protein B [Paulinella chromatophora]
 gi|171191726|gb|ACB42688.1| ferrous iron transport protein B [Paulinella chromatophora]
          Length = 605

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 24/201 (11%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG----YLVKISDTAG 276
           ++ +LG  N GKS+LFNAL+     I  + PG T D+L  ++ ++       + + D  G
Sbjct: 10  QVALLGMPNTGKSTLFNALSGSHAHI-GNWPGLTVDLLQAEIIIDNNQEEKSIILVDLPG 68

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFP-----KNIDFIFIGTKSD 330
           I +     E E + + FL+    DLI+++   +   +++          +  +     SD
Sbjct: 69  IYDLRGFSEDEAVVQRFLDHTPPDLIIIVLNASQIDRQLRLALQIRNLKLPTLVALNMSD 128

Query: 331 LYSTYTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
             + +    DH             IS+  G+GL  L  +I  +L N       S    + 
Sbjct: 129 EANRFGVNIDHKALSIGLAMQVLPISAKHGQGLSLLSQRIWELLLN-LPNSHLSQNIRQN 187

Query: 379 HLYHLSQTVRYLEMASLNEKD 399
               L++ ++ L  A++   +
Sbjct: 188 SDEELARNMQILLKAAIALPN 208


>gi|121634959|ref|YP_975204.1| hypothetical protein NMC1171 [Neisseria meningitidis FAM18]
 gi|120866665|emb|CAM10417.1| hypothetical protein NMC1171 [Neisseria meningitidis FAM18]
 gi|325132549|gb|EGC55242.1| GTP-binding proten HflX [Neisseria meningitidis M6190]
 gi|325138323|gb|EGC60892.1| GTP-binding proten HflX [Neisseria meningitidis ES14902]
          Length = 392

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + + + I  LK  + +   Q  L    R         ++G++N GKSSLFN L K  +
Sbjct: 180 DRRLIAHRINALKKQLVNLKKQRALRRKPRESGTIKTFALVGYTNVGKSSLFNRLTKSGI 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 240 YAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDLPHKLISAFSATLEETAQADVLLH 299

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 300 VVDAAAPNSGQQIEDVENVLQEIHAGDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIATV 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 360 RISVAENTGIDALREAIAEYCATAPNTDETEMP 392


>gi|313633442|gb|EFS00270.1| GTP-binding protein HflX [Listeria seeligeri FSL N1-067]
          Length = 409

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 111/314 (35%), Gaps = 33/314 (10%)

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLT 166
           A       RA +   ID  +       + ++++    +++       L          L+
Sbjct: 86  ATQVRNISRAVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYK-YLLPRLSGQGVLLS 144

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            +   I +      + ++     +E ++DI      +  H  +       ++ ++  ++G
Sbjct: 145 KLGGGIGSRGPGETKLEMDKRHIREKMHDIKAQLTHVEQHRKRIIDRRNGQSVFRFGLIG 204

Query: 227 HSNAGKSSLFNALAK----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           ++NAGKS++FN L      ++  +   +  TTR +        G+   ++DT G  +   
Sbjct: 205 YTNAGKSTIFNRLTNETTLEEDKLFATLDPTTRKIRF----SGGFQALLTDTVGFIQDLP 260

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSD 330
                  + T  E  N D+++ + + +    +                 I  + +  K D
Sbjct: 261 TTLIAAFRSTLEETANVDVLIHVVDASDLDYLQHETTVLVLLEELEMNRIPILTVYNKMD 320

Query: 331 LYST--YTEEYDHLIS--------SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
             +     +  +H++         S   + + ELI K  +  + +  +      +  +  
Sbjct: 321 QVAENFIPDRPEHILISALNEKAPSIIKQRMIELIEKNWTFFTKELSEASGKELAQIKQQ 380

Query: 381 YHLSQTVRYLEMAS 394
             +++ + YLE   
Sbjct: 381 AWITK-LEYLENKQ 393


>gi|220917487|ref|YP_002492791.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955341|gb|ACL65725.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 688

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 1/105 (0%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           + H +     +++     ++++G+ N GKS LF AL  K V  V++ PGTT +V      
Sbjct: 10  ARHEADLDRKQVVSAARSVILVGNPNVGKSVLFGALTGKYVT-VSNYPGTTVEVTRGSAT 68

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           +EG    + DT G      + E E + R  L VE   + L + + 
Sbjct: 69  IEGRPWHVMDTPGTNNLLPMSEDEQVTRDILLVERDYVCLQVCDA 113


>gi|197122704|ref|YP_002134655.1| small GTP-binding protein [Anaeromyxobacter sp. K]
 gi|196172553|gb|ACG73526.1| small GTP-binding protein [Anaeromyxobacter sp. K]
          Length = 688

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 1/105 (0%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
           + H +     +++     ++++G+ N GKS LF AL  K V  V++ PGTT +V      
Sbjct: 10  ARHEADLDRKQVVSAARSVILVGNPNVGKSVLFGALTGKYVT-VSNYPGTTVEVTRGSAT 68

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
           +EG    + DT G      + E E + R  L VE   + L + + 
Sbjct: 69  IEGRPWHVMDTPGTNNLLPMSEDEQVTRDILLVERDYVCLQVCDA 113


>gi|15221574|ref|NP_174383.1| GTP-binding protein (ERG) [Arabidopsis thaliana]
 gi|11467944|sp|O82653|ERG_ARATH RecName: Full=GTP-binding protein ERG
 gi|9755380|gb|AAF98187.1|AC000107_10 F17F8.15 [Arabidopsis thaliana]
 gi|50253492|gb|AAT71948.1| At1g30960 [Arabidopsis thaliana]
 gi|53850539|gb|AAU95446.1| At1g30960 [Arabidopsis thaliana]
 gi|332193176|gb|AEE31297.1| GTP-binding protein ERG [Arabidopsis thaliana]
          Length = 437

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 80/230 (34%), Gaps = 44/230 (19%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
              + +G++ E  +    + I+G  NAGKSSL N +    VA  +    TT   +   L 
Sbjct: 138 DEELGEGEVREEDQKSLNVGIIGPPNAGKSSLTNFMVGTKVAAASRKTNTTTHEVLGVLT 197

Query: 264 LEGYLVKISDTAGIRET----DDIVEKEGIKRTFLEVENADLILLLKEI------NSKKE 313
                V   DT G+            K  ++  +  V+  D+++++ ++         + 
Sbjct: 198 KGDTQVCFFDTPGLMLKKSGYGYKDIKARVQNAWTSVDLFDVLIVMFDVHRHLMSPDSRV 257

Query: 314 ISFPK--------NIDFIFIGTKSDLYSTYTE--------------EYDHLISSFTGEGL 351
           +   K            +    K DL     +              E   +IS   G G+
Sbjct: 258 VRLIKYMGEEENPKQKRVLCMNKVDLVEKKKDLLKVAEEFQDLPAYERYFMISGLKGSGV 317

Query: 352 EELINKI-KSILSNKFKKLPFSI-----------PSHKRHLYHLSQTVRY 389
           ++L   +    +   +++  F++              +R L H+ Q + Y
Sbjct: 318 KDLSQYLMDQAVKKPWEEDAFTMSEEVLKNISLEVVRERLLDHVHQEIPY 367


>gi|153949543|ref|YP_001402606.1| GTPase HflX [Yersinia pseudotuberculosis IP 31758]
 gi|152961038|gb|ABS48499.1| GTP-binding protein HflX [Yersinia pseudotuberculosis IP 31758]
          Length = 428

 Score = 64.1 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 113/354 (31%), Gaps = 50/354 (14%)

Query: 70  PSPESFTGEDSAE-----FHVHGGIAVV-NGILEELAKMPNLRLANPGEFSRRAFENGKI 123
           P P+ F GE  AE         G   V+ +  L    +    RL                
Sbjct: 52  PHPKYFVGEGKAEEIADAVKASGASVVLFDHALSAAQERNLERLCQ-------------C 98

Query: 124 DLLEAESLADLISSETEMQR----RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179
            +++   L   I ++         ++ +  +    + L   W   L   +  I       
Sbjct: 99  RVIDRTGLILDIFAQRARTHEGKLQVELAQLRHIATRLVRGWTH-LERQKGGIGLRGPGE 157

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239
            + +      ++ ++ IL     ++    QG+      +   + ++G++NAGKSSLFN +
Sbjct: 158 TQLETDRRLLRDRISLILSRLERVAKQREQGRRARTRADIPTVSLVGYTNAGKSSLFNKI 217

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298
              DV    D    T D     +++       ++DT G             K T  E   
Sbjct: 218 TAADV-YAADQLFATLDPTLRRINVADVGDTVLADTVGFIRHLPHDLVAAFKATLQETRQ 276

Query: 299 ADLILLLKEINSKKEIS------------FPKNIDFIFIGTKSDLYSTYTEEYD------ 340
           A L+L + +    +                   I  + +  K DL   +    D      
Sbjct: 277 ASLLLHIIDAVDPRVAENMAAVDTVLAEIEADEIPTLLVMNKIDLLDDFVPRIDRNEDNL 336

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
                +S+ TG G+  L   +   LS +       +P      R  ++  Q + 
Sbjct: 337 PVRVWLSAQTGAGIPLLFQALTERLSGEIAHFELRLPPQAGRLRSRFYQLQAIE 390


>gi|326405802|gb|ADZ62873.1| GTP-binding protein HflX [Lactococcus lactis subsp. lactis CV56]
          Length = 414

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 19/230 (8%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-AIVT 248
           +  + +I      +       +        ++I ++G++NAGKSS+ NAL   D      
Sbjct: 170 RTRIENIDKALKKVEKTRENIRQKRSKSGIFRIGLIGYTNAGKSSIMNALVGLDKEQYEQ 229

Query: 249 DIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +    T D  T  + L E + V ++DT G  +       +  K T  E  N DL++ + +
Sbjct: 230 NELFATLDATTKAVKLVEDFTVSLTDTVGFIQNLPTELIKAFKSTLEESANVDLLIHVVD 289

Query: 308 INSKK------------EISFPKNIDFIFIGTKSDLYST---YTEEYDHLISSFTGEGLE 352
            ++              E     NI  + +  K D+  +    T      +S  +  G++
Sbjct: 290 ASNPHHEIHEQTVLKIMEDLKLTNIPVLNVYNKMDIAPSDFLPTLSPSLQLSIKSESGVQ 349

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
            L   I   L   F      +P  K   Y L +  +   + S+ E + G 
Sbjct: 350 WLKTAILEKLHELFDAFELELPYEK--AYQLPELRKSALVQSVVEGEEGY 397


>gi|308188268|ref|YP_003932399.1| tRNA modification GTPase trmE [Pantoea vagans C9-1]
 gi|308058778|gb|ADO10950.1| Probable tRNA modification GTPase trmE [Pantoea vagans C9-1]
          Length = 426

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 98/279 (35%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+      +   + ++G++NAGKS+LFNA+   +V    D    T
Sbjct: 173 QILSRLERVEKQREQGRQSRAKADVPTVSLVGYTNAGKSTLFNAMTSANV-FAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     L++     V ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRLNVADVGDVVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDGADLRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +++  E      I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 TENIAAVDAVLEEIEADEIPTLLVMNKIDMLDGFEPRIDRNEENLPIRVWLSAQTGAGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            L   +   LS +  +    +P      R  ++  Q + 
Sbjct: 352 LLWQALSERLSGEIAQHALRLPPEAGRLRSRFYQLQAIE 390


>gi|193213654|ref|YP_001999607.1| ferrous iron transport protein B [Chlorobaculum parvum NCIB 8327]
 gi|193087131|gb|ACF12407.1| ferrous iron transport protein B [Chlorobaculum parvum NCIB 8327]
          Length = 712

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 19/166 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + + G+ NAGKSSLFNAL       V + PG T +     LD   Y + + D  G   
Sbjct: 7   ITVALAGNPNAGKSSLFNALTGAHQ-RVGNFPGVTIEKHEGYLDYRDYRINVVDLPGTYS 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------------EISFPKNID--FI 323
                 +E + R F+  E  D+++ + E  + +              ++    N+     
Sbjct: 66  LTPYSPEEIVTRRFIIDEQPDVVVNVVEGTNLERNMMLTVQLMEMEVDLLVALNMMDEVE 125

Query: 324 FIGTKSDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367
             G K D+         +    S+   +GL++L++ I  ++  + +
Sbjct: 126 EKGFKIDIDQLELLLGSHIVPTSARQRKGLDDLLDHIIRVVDGRIE 171


>gi|222479728|ref|YP_002565965.1| GTP-binding proten HflX [Halorubrum lacusprofundi ATCC 49239]
 gi|222452630|gb|ACM56895.1| GTP-binding proten HflX [Halorubrum lacusprofundi ATCC 49239]
          Length = 449

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 91/252 (36%), Gaps = 40/252 (15%)

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHIS--QGKLGE 214
            Y     +     +  +    F    +      +++   I  ++++++S     + +  +
Sbjct: 138 RYELPRAEAKASLAKRDERPGFMGLGEYDESVERDIKRQISEIRDELASIAEKEEARREQ 197

Query: 215 IIRNGYK-IVILGHSNAGKSSLFNALAKKD--------------VAIVTDIPGTTRDVLT 259
              +G+  + + G++NAGKS+L   LA +                A   D+  TT    T
Sbjct: 198 RRDSGFDLVALAGYTNAGKSTLMRRLAAEIDVDENAERHPDLDTTAESQDMLFTTLGTTT 257

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK- 318
              ++E   V ++DT G          E  + T   V  ADL+LL+ + +   E    K 
Sbjct: 258 RRAEMEKRDVLLTDTVGFIADLPHWLVESFESTLDSVYRADLVLLVVDASEPVETMREKL 317

Query: 319 -----------NIDFIFIGTKSDLYS-----------TYTEEYDHLISSFTGEGLEELIN 356
                          + +  K D  +           +        +S+ T  G+ EL +
Sbjct: 318 VTSHDTLYERNEAPVVTVFNKVDRLAPGELADKRAALSGVAPDPVAVSAKTSAGVAELRD 377

Query: 357 KIKSILSNKFKK 368
           ++++ L +  ++
Sbjct: 378 RVEAELPDWERE 389


>gi|86607879|ref|YP_476641.1| GTP-binding protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556421|gb|ABD01378.1| GTP-binding protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 588

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 59/337 (17%), Positives = 113/337 (33%), Gaps = 34/337 (10%)

Query: 51  RYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANP 110
           R      G++L + L      P S T          G +  +  ++++L     +     
Sbjct: 245 RLVESAGGQVL-QALWQRREGPNSAT------VIGSGKVQELALLVQDLGANLVVFDREL 297

Query: 111 GEFSRRAFEN--GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168
                R  E   G   +  +E + D I ++    R   ++    +L  L  +   +   +
Sbjct: 298 TPSQVRTLEEAVGVRVVDRSEVILD-IFAQRARTRAGKLQVELAQLQYLLPRLAGRGRTM 356

Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVIL 225
                        E       + +   I  L+ ++       +     R       + ++
Sbjct: 357 SRLGGGIGTRGPGETQLEMERRAIQRRISKLRQEVEELRRHRQRLRQRREASQIPVVALV 416

Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIV 284
           G++NAGKS+L NAL    V  V D    T D  T  L+L     V ++DT G        
Sbjct: 417 GYTNAGKSTLLNALTHAQV-YVADQLFATLDPTTRRLELPDQQAVLLTDTVGFLTELPDQ 475

Query: 285 EKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTKSD-L 331
             +  + T  EV  AD +L + +++               +           +  K D L
Sbjct: 476 LVDAFQATLEEVTEADALLHVVDLSHPNWEGQIEAVETLLDKLPLATGPRQLVFNKIDRL 535

Query: 332 YSTYTEEY------DHLISSFTGEGLEELINKIKSIL 362
              + E+          +S+ TG+ L++L + +    
Sbjct: 536 DPEWVEDVRLLYPKALFVSATTGQNLDQLHHTLAQFA 572


>gi|303326599|ref|ZP_07357041.1| ferrous iron transport protein B [Desulfovibrio sp. 3_1_syn3]
 gi|302862587|gb|EFL85519.1| ferrous iron transport protein B [Desulfovibrio sp. 3_1_syn3]
          Length = 724

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 1/93 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I + G+ N GK+++FN         V + PG T D         G  V + D  G   
Sbjct: 2   VRIALAGNPNCGKTTVFNGYTGA-RQHVGNYPGVTVDRKEGQFVFNGEPVTLVDLPGTYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
                ++E + R  L   N   ++ + + ++ +
Sbjct: 61  LTAYSQEELVARRELAANNVQAVIDVVDSSALE 93


>gi|288941250|ref|YP_003443490.1| ferrous iron transport protein B [Allochromatium vinosum DSM 180]
 gi|288896622|gb|ADC62458.1| ferrous iron transport protein B [Allochromatium vinosum DSM 180]
          Length = 797

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 25/207 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y I ++G+ N GK++LFNAL       V +  G T +  T           + D  G   
Sbjct: 16  YCIGVVGNPNCGKTTLFNALTGS-RQQVGNWSGVTVERKTGRYRFGESEFTLVDLPGTYS 74

Query: 280 TD----DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKS 329
            D     +   E I R F+    AD+IL + + +S +                +      
Sbjct: 75  LDVTDPSVSLDERIARDFVHAREADVILNILDASSLERNLYLTTQLIEMGRPLVLALNMM 134

Query: 330 DLYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKK--LPFSIPS 375
           D+      + D              + +  G GL EL   +    ++   +   P  +  
Sbjct: 135 DVAEARGIQIDIAALSKRLGCPVIPLVAANGRGLPELKQTLFEQAAHASGRAIAPPVLIP 194

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGL 402
               L      +     A    +   +
Sbjct: 195 FGPTLEAAISALEPRLSAIAEAQGDPV 221


>gi|222445170|ref|ZP_03607685.1| hypothetical protein METSMIALI_00791 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434735|gb|EEE41900.1| hypothetical protein METSMIALI_00791 [Methanobrevibacter smithii
           DSM 2375]
          Length = 336

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 24/174 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IVI G  N GKS+L N ++  D  I  + P TT+ +    ++     ++I DT G+ +  
Sbjct: 165 IVIAGFPNVGKSTLLNQISGADPQI-ANYPFTTKGIQIGHVERHWKSIQIIDTPGLLDRP 223

Query: 282 DIVEKEGIKRTFLEVEN-ADLILLLKEINS-------------KKEISFPKNIDFIFIGT 327
            +   +      + +E+ AD IL + + +              K+      NI  I++  
Sbjct: 224 VLEMNDIELNAIVALEHLADAILFIFDASETCGFGLESQYNLLKQIEKIFDNIPVIYLFN 283

Query: 328 KSDLY------STYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL         Y +E D    IS+  GEG+++ INK+   +    +      
Sbjct: 284 KMDLIEDTSYVEQYVDELDNSIFISAIEGEGIDK-INKVLDSVKKIERNEEDEY 336


>gi|210621736|ref|ZP_03292785.1| hypothetical protein CLOHIR_00730 [Clostridium hiranonis DSM 13275]
 gi|210154618|gb|EEA85624.1| hypothetical protein CLOHIR_00730 [Clostridium hiranonis DSM 13275]
          Length = 657

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 22/165 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I +LG+ N GK+++FN L   +   V + PG T +     L+ +   +KI D  GI  
Sbjct: 2   LNIALLGNPNVGKTTVFNLLTGSNQ-YVGNWPGVTIEKKEGFLEDD---IKIVDLPGIYA 57

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYS 333
            D    +E + ++FLE E+ DLIL + + ++     +        N   + +    D+  
Sbjct: 58  MDTFSNEEKVSKSFLEKEDVDLILNVVDASNLTRNLYLTTQLMQFNKPIVILLNMLDVAK 117

Query: 334 TYTEEYD------------HLISSFTGEGLEELINKIKSILSNKF 366
               E D              I +   EG++++ +K++      F
Sbjct: 118 ARGMEIDTHKLAREFGVTVIPIVAKKKEGVDDIASKLREAARKPF 162


>gi|218245160|ref|YP_002370531.1| GTP-binding proten HflX [Cyanothece sp. PCC 8801]
 gi|218165638|gb|ACK64375.1| GTP-binding proten HflX [Cyanothece sp. PCC 8801]
          Length = 564

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 26/186 (13%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA----IVTDIPGTTRD 256
           N + +H S+ +     +    + I+G++NAGKS+L NAL K DV     +   +  TTR 
Sbjct: 376 NQLQAHRSRLRHQRQQQEVPSVAIVGYTNAGKSTLINALTKADVYTADQLFATLDPTTRR 435

Query: 257 V-LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---- 311
           + +      E   + ++DT G          +  + T  EV  AD +L + +++      
Sbjct: 436 LQVVEPTTGESTTLLLTDTVGFIHELPPSLVDAFRATLEEVTEADALLHVVDLSHPAWEH 495

Query: 312 ---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH-------LISSFTGEGLEELI 355
                    +EIS    +       K D   + T E           IS+  G GLE L 
Sbjct: 496 QIESVMTILEEISLTPGVIL-LAFNKIDQVDSDTLERAKLNYPEAVFISAQQGFGLETLR 554

Query: 356 NKIKSI 361
            ++  +
Sbjct: 555 QQLVRV 560


>gi|168211471|ref|ZP_02637096.1| ferrous iron transport protein B [Clostridium perfringens B str.
           ATCC 3626]
 gi|170710527|gb|EDT22709.1| ferrous iron transport protein B [Clostridium perfringens B str.
           ATCC 3626]
          Length = 707

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           S +S+ K     +  Y + + G+ N GKS++FNAL   +     + PG T        + 
Sbjct: 11  SLLSKEKSKGNTKEDYVVALAGNPNVGKSTVFNALTGLNQ-HTGNWPGKTVAKAEGYYEF 69

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE----------- 313
           +   +KI D  G        E+E I R ++   + D+++++ +  S +            
Sbjct: 70  KDSTIKIVDLPGTYSLLSNSEEEEIARDYICFNDPDIVVVVADATSLERNLNLFIQISEI 129

Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
                  ++     +   I    DL S          S+  G G+EEL   I
Sbjct: 130 TEKSILCVNLTDEAEKNNIKIDLDLLSKELNANLVSSSARNGVGIEELKEAI 181


>gi|304321928|ref|YP_003855571.1| GTP-binding protein HFLX [Parvularcula bermudensis HTCC2503]
 gi|303300830|gb|ADM10429.1| GTP-binding protein HFLX [Parvularcula bermudensis HTCC2503]
          Length = 469

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 77/211 (36%), Gaps = 44/211 (20%)

Query: 200 KNDISSHISQGKLGEIIRNGYK-------IVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
            + + + + Q +    ++   +       I ++G++NAGKSSLFN +    V    D+  
Sbjct: 185 IDRLKAQLEQVRRTRTLQRAKRKRAPHPVIALVGYTNAGKSSLFNRMTGAGVT-AQDLLF 243

Query: 253 TTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D     +DL G     +SDT G             + T  EV  AD++L +++I+  
Sbjct: 244 ATLDPTMRAVDLPGVGRAILSDTVGFISDLPTDLVAAFRATLEEVLEADILLHVRDISHS 303

Query: 312 K---------------EISFPKNIDFIFIGTKSDLYS--------------------TYT 336
           +                I        I +  K DL S                    T  
Sbjct: 304 EHEAQRLDVLSVLGELGIDEDSPQQVIEVWNKIDLLSPDDQHTAVLTAAHRSTFAEATLL 363

Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFK 367
                 +S+ +GEGLE L   I  +L+  + 
Sbjct: 364 SPLVSAVSAHSGEGLEGLFGAIDHLLTQDYT 394


>gi|238797607|ref|ZP_04641104.1| GTP-binding protein hflX [Yersinia mollaretii ATCC 43969]
 gi|238718604|gb|EEQ10423.1| GTP-binding protein hflX [Yersinia mollaretii ATCC 43969]
          Length = 433

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 95/280 (33%), Gaps = 30/280 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ + 
Sbjct: 114 RARTHEGKLQVELAQLRHIATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDRIT 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     ++    QG+      +   + ++G++NAGKSSLFN +   DV    D    T
Sbjct: 173 LILSRLERVAKQREQGRRARTRADIPTVSLVGYTNAGKSSLFNKITAADV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     +++       ++DT G             K T  E   A L+L + +    + 
Sbjct: 232 LDPTLRRINVADVGDTVLADTVGFIRHLPHDLVAAFKATLQETRQASLLLHIIDAADPRV 291

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                       EI     I  + +  K DL   +    D           +S+ TG G+
Sbjct: 292 TENMAAVDTVLAEIE-ADEIPTLLVMNKIDLLDDFVPRIDRNEDNLPVRVWLSAQTGAGI 350

Query: 352 EELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
             L   +   LS +       +P      R  ++  Q + 
Sbjct: 351 PLLFQALTERLSGEIAHYELRLPPQAGRLRSRFYQLQAIE 390


>gi|322385662|ref|ZP_08059306.1| GTP-binding protein HflX [Streptococcus cristatus ATCC 51100]
 gi|321270400|gb|EFX53316.1| GTP-binding protein HflX [Streptococcus cristatus ATCC 51100]
          Length = 412

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 25/235 (10%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKAVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNCLTSKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T +++L G L V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKNINLSGQLNVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPHHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKI 358
            K            +I  + +  K+D    +T     + + S   +    L+ ++
Sbjct: 296 EKTVLDIMKELDMLDIPRLTLYNKADKAENFTPTVTPYSLISAKADNSRALLQQV 350


>gi|309775905|ref|ZP_07670898.1| GTP-binding protein HflX [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916327|gb|EFP62074.1| GTP-binding protein HflX [Erysipelotrichaceae bacterium 3_1_53]
          Length = 415

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 123/350 (35%), Gaps = 40/350 (11%)

Query: 99  LAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLY 158
           + K   +R     +   R   N  +  L+  +L D++ +    +  L +        +  
Sbjct: 51  IGKCEEIREYVQEQKPERIVFNHDLSPLQIRNLEDILQTPVMDRTELILAIFESRAVTRI 110

Query: 159 GQWIDKLTHIRSFIEADLDFSEE--------------EDVQNFSSKEVLNDILFLKNDIS 204
            +   +   ++  +   +  + +              E       + +   I  L+ ++ 
Sbjct: 111 ARLQIECAQLKKLLPRLIGANTQLGRQSGSGKNRGAGEKQLELDRRRINARIQELQRELK 170

Query: 205 SHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALA-------KKDVAIVTDIPGTT 254
              +Q       R       + ++G++NAGKS++ N L             +  D+   T
Sbjct: 171 KVEAQRLTQRRSRQKSMLPLVSLVGYTNAGKSTIMNMLLEYSSPYEHDKRVLEKDMLFAT 230

Query: 255 RDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     +DL +G    +SDT G          +    T  EV  A L++ + +++S+  
Sbjct: 231 LDTSIRHIDLPDGKSFLLSDTVGFVSDLPHDLVDAFHSTLEEVRYASLLVQVVDVSSEAC 290

Query: 313 ----EISF-------PKNIDFIFIGTKSD-LYSTYTEEYDH--LISSFTGEGLEELINKI 358
               EI+          +I  I +  K D  +  Y  E+ H   +S+    GL EL+  I
Sbjct: 291 ARQMEITQDTLQQINAADIPMITVYNKCDQSHYPYPREHAHDLYMSAKDKVGLHELLELI 350

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
              L    K +   IP  +  +Y L      +   +  E    L+++  +
Sbjct: 351 HRHLYPDEKHVIMHIPYQQTGIYSLLMKHARVITRTDEEDGIHLEVVISD 400


>gi|294084362|ref|YP_003551120.1| GTPase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663935|gb|ADE39036.1| GTPase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 430

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 35/224 (15%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + +++ ++ +K ++        L    R+      + ++G++NAGKS+LFN L   
Sbjct: 161 ELDRRMLMDRVMRIKGELREVERTRHLQRRNRDRSETPTLALIGYTNAGKSTLFNMLTGA 220

Query: 243 DVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           DV +  D+   T D     + L  G    ++DT G          E  K T  EV  AD+
Sbjct: 221 DV-LSKDMLFATLDPTMRGMKLPSGRRAVLADTVGFISQLPTELVEAFKSTLEEVVEADI 279

Query: 302 ILLLKEINSK-------------KEISFPKNI---DFIFIGTKSDLYSTYTEE------- 338
           ++ + + +S              +E+     +     I I  KSD       +       
Sbjct: 280 LVHVHDASSPMVAEEYADVCQILEELGLDAEMQAERVIHILNKSDKIDDMAGDMAGETRE 339

Query: 339 -------YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                      +S+ TG G+++ +  +   ++    +L   +  
Sbjct: 340 YLENLVGNGVFVSALTGAGIDDALLALDEKINIDDIRLDVMLAP 383


>gi|227326198|ref|ZP_03830222.1| putative GTPase HflX [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 426

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 96/280 (34%), Gaps = 30/280 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIT 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+   +  +   + ++G++NAGKS+LFN +    V    D    T
Sbjct: 173 QILSRLERVEKQREQGRRSRVRADVPTVSLVGYTNAGKSTLFNKITSAGV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     ++++      ++DT G             K T  E   A L+L + +    + 
Sbjct: 232 LDPTLRRIEVDDVGDTVLADTVGFIRQLPHDLVAAFKATLQETRQASLLLHVVDAADPRL 291

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                       EI     I  + +  K D+   +    D           +S+ TG+G+
Sbjct: 292 DENIDAVHDVLAEIE-ADEIPALLVMNKIDMLDDFVPRIDRNEENLPVRVWLSAQTGDGI 350

Query: 352 EELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
             L   +   LS +  +    +P      R  ++  Q + 
Sbjct: 351 PLLFQALTERLSGEIAQHTLHLPPQAGRLRSRFYQLQAIE 390


>gi|7449539|pir||B65042 yfjP protein - Escherichia coli (strain K-12)
          Length = 289

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + AGKSSL NAL   +V+ V+D+   TRD L   L +  + + I D  G+ E+ 
Sbjct: 41  IGIMGKTGAGKSSLCNALFAGEVSPVSDVAACTRDPLRFRLQIGEHFMTIVDLPGVGESG 100

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
            + + E       ++   DLIL L + + +  ++  ++     IG
Sbjct: 101 -VRDTEYAALYREQLPRLDLILWLIKADDRA-LATDEHFYRQVIG 143


>gi|288574914|ref|ZP_06393271.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570655|gb|EFC92212.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 203

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 28/178 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277
           I + G SN GKSSL NAL  + +A ++  PG TR +   ++   G    + D  G     
Sbjct: 26  IALAGRSNVGKSSLLNALIDQKIAHISSKPGKTRSINFFEVASGGSPFTLVDLPGYGFAS 85

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTK 328
             + +    ++ I++     +N  L++ L +            +E      +  + + TK
Sbjct: 86  RSKKEQDQWRKLIEKYVSSRQNLSLVIHLVDFRHGLLKNDVELQEWISALGVPMLTVFTK 145

Query: 329 SDLYSTYTEEYDHLISSFTG---------------EGLEELINKIKSILSNKFKKLPF 371
            D  +    + +      +G                G++EL   I + L    + +  
Sbjct: 146 VDKIARGKRKGELHKYIKSGLKSVDVPILTSTEGKLGIDELRTFISAYLEEWNRYVDS 203


>gi|163744854|ref|ZP_02152214.1| GTP-binding protein Era [Oceanibulbus indolifex HEL-45]
 gi|161381672|gb|EDQ06081.1| GTP-binding protein Era [Oceanibulbus indolifex HEL-45]
          Length = 302

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 76/205 (37%), Gaps = 24/205 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGQTQLVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           + +    +++  +   +    +AD+++LL E +           ++  +  K        
Sbjct: 63  LFQPRRRLDRAMVAAAWGGAADADVVVLLIEAHRGMTEGVERILEELGNIAKGRRVALAI 122

Query: 327 TKSD---------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K D         L       +D     +IS+  G G++ L + +   +       P   
Sbjct: 123 NKIDRVEAPVLLGLTEKMNARFDFIETFMISAERGHGIDTLRHWLAGEVPEGPWLYPEDQ 182

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            +        ++  R      L+++
Sbjct: 183 IADLPMRNIAAEITREKLTLRLHQE 207


>gi|33866698|ref|NP_898257.1| putative GTP-binding protein, transporter associated [Synechococcus
           sp. WH 8102]
 gi|33633476|emb|CAE08681.1| putative GTP-binding protein, transporter associated [Synechococcus
           sp. WH 8102]
          Length = 562

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 106/318 (33%), Gaps = 47/318 (14%)

Query: 96  LEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS----ETEMQRRL-SME-- 148
           L+E A     R A     + R     ++  ++A +L  L++      +E+   + +    
Sbjct: 242 LQEAALEVRRRGA-SLVVTDR-----ELTPVQARNLERLLACPVSDRSELILDIFAQRAG 295

Query: 149 GMSGELSSLYGQWIDKLTHI----RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS 204
             +G L     Q   +L  +    RS              +    K+       +   + 
Sbjct: 296 SAAGRLQVELAQLRYRLPRLLGRGRSLSRQGGGIGTRGPGETQLEKDRRAISRRIDRLLR 355

Query: 205 SHISQGKLGEIIRNG----YKIVILGHSNAGKSSLFNALAKK---DVAIVTDIPGTTRDV 257
                 +    +R+      ++ ++G++NAGKSSL NAL  +   D  +  +    T D 
Sbjct: 356 DQQQLQQHRSRLRDQRRGLPRVALVGYTNAGKSSLLNALCGRRESDRVLAENKLFATLDP 415

Query: 258 LTIDLDL--EGY---LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
            T  LDL   G     + I+DT G          E  + T  E  +AD++L++ ++    
Sbjct: 416 TTRRLDLPQPGQRPDRLLITDTVGFIRDLPKPLVEAFRATLEEALDADVLLVVVDLADPD 475

Query: 313 E-----------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI-------SSFTGEGLEEL 354
                        S         +  + D       E            S+  G+GL  L
Sbjct: 476 WSGQLSTVHRLLDSLGSTAMRRVVANQIDRCPLDAVETIRRQDAQTLFLSAKRGDGLRGL 535

Query: 355 INKIKSILSNKFKKLPFS 372
            + ++    +   +    
Sbjct: 536 QDWLREQFFDPGAESDLD 553


>gi|312882815|ref|ZP_07742548.1| putative GTPase HflX [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369507|gb|EFP97026.1| putative GTPase HflX [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 429

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 90/256 (35%), Gaps = 31/256 (12%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W    TH+             E       + + +
Sbjct: 114 RARTHEGKLQVELAQLRHISTRLIRGW----THLERQKGGIGLRGPGETQLETDRRLLRD 169

Query: 195 DILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
            I  +   +     Q + G   RN      + ++G++NAGKS+LFN + +  V    D  
Sbjct: 170 RIKAILRRLEKVAKQREQGRRARNRAEIPTVSLVGYTNAGKSTLFNQITQASV-YAADQL 228

Query: 252 GTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     +D+       ++DT G             K T  E + AD++L + + + 
Sbjct: 229 FATLDPTLRKIDVADIGSAILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASD 288

Query: 311 KK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGE 349
           ++            E     +I  + +  K D         +           +S+  G+
Sbjct: 289 ERFRENIHAVHEVLEEIDAHDIPALVVMNKIDNLEGQEPRIERDEDGVASVVWLSAMEGK 348

Query: 350 GLEELINKIKSILSNK 365
           G E L   +   L+++
Sbjct: 349 GTELLFAALSERLASQ 364


>gi|260425485|ref|ZP_05779465.1| GTP-binding protein Era [Citreicella sp. SE45]
 gi|260423425|gb|EEX16675.1| GTP-binding protein Era [Citreicella sp. SE45]
          Length = 301

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 64/171 (37%), Gaps = 24/171 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-IALIGEPNAGKSTLTNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQLIFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           + +    +++  +   +    +AD+I+LL E +           +     P+        
Sbjct: 63  LFKPRRRLDRAMVAAAWGGAADADIIVLLIEAHRGITEGVERIIEGLAELPRGRKVALAI 122

Query: 327 TKS-------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364
            K              DL   Y      +IS+  G G+ +L   +   +  
Sbjct: 123 NKIDRVEAPVLLALSKDLNDRYAFANTFMISAERGYGVADLRKWLAEEVPE 173


>gi|253690081|ref|YP_003019271.1| GTP-binding proten HflX [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756659|gb|ACT14735.1| GTP-binding proten HflX [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 426

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 96/280 (34%), Gaps = 30/280 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIT 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+   +  +   + ++G++NAGKS+LFN +    V    D    T
Sbjct: 173 QILSRLERVEKQREQGRRSRVRADVPTVSLVGYTNAGKSTLFNKITSAGV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     ++++      ++DT G             K T  E   A L+L + +    + 
Sbjct: 232 LDPTLRRIEVDDVGDTVLADTVGFIRQLPHDLVAAFKATLQETRQASLLLHVVDAADPRL 291

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                       EI     I  + +  K D+   +    D           +S+ TG+G+
Sbjct: 292 DENIEAVNDVLAEIE-ADEIPALLVMNKIDMLDDFVPRIDRNEENLPVRVWLSAQTGDGI 350

Query: 352 EELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
             L   +   LS +  +    +P      R  ++  Q + 
Sbjct: 351 PLLFQALTERLSGEIAQYTLHLPPQAGRLRSRFYQLQAIE 390


>gi|59712929|ref|YP_205705.1| putative GTPase HflX [Vibrio fischeri ES114]
 gi|197335770|ref|YP_002157118.1| GTP-binding protein HflX [Vibrio fischeri MJ11]
 gi|59481030|gb|AAW86817.1| predicted GTPase [Vibrio fischeri ES114]
 gi|197317260|gb|ACH66707.1| GTP-binding protein HflX [Vibrio fischeri MJ11]
          Length = 433

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 92/263 (34%), Gaps = 25/263 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +E + 
Sbjct: 114 RARTYEGKLQVELAQLRHISTRLIRGWTH-LERQKGGIGLRGPGETQLETDRRLLRERIK 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     ++    QG+          I ++G++NAGKS+LFN + +  V    D    T
Sbjct: 173 AILRRLGKVAKQREQGRRARHRAEIPTISLVGYTNAGKSTLFNRITEAGV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGYLV-KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     +++       ++DT G             K T  E + A+++L + + + ++ 
Sbjct: 232 LDPTLRKIEVADVGTSILADTVGFIRHLPHDLVAAFKATLQETQEANILLHVVDASDERF 291

Query: 313 -----------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                      E      +  + +  K D         +           +S+  G+G+E
Sbjct: 292 RENIEAVDIVLEEIDANEVPTLLVMNKIDNLEDQQPRIERDEEGIPRCVWVSAMEGKGIE 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS 375
            L   +   LS +  +    +P 
Sbjct: 352 LLFQALTERLSGQMVEHSLLLPP 374


>gi|329119487|ref|ZP_08248172.1| GTP-binding protein HflX [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464420|gb|EGF10720.1| GTP-binding protein HflX [Neisseria bacilliformis ATCC BAA-1200]
          Length = 392

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 68/202 (33%), Gaps = 28/202 (13%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + +   I  LK  + +   Q       R         + G++N GKSSLFN L K DV
Sbjct: 177 DRRLIAQKITALKKRLEAVKRQRATRRKARQSGSLPTFALAGYTNTGKSSLFNRLTKADV 236

Query: 245 AIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
            +  D    T D     L L  G  V ++DT G               T  E   ADLIL
Sbjct: 237 -LAKDQLFATLDTTARRLYLAPGTEVILTDTVGFVRDLPHSLVAAFSATLEETALADLIL 295

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYD----------- 340
            + + +                     +I  + +  K+DL    +               
Sbjct: 296 HVIDASRPDHERQADDVNRVLEEIGAGDIPRLLVYNKTDLLPADSRPAGLLRRADGRPAA 355

Query: 341 HLISSFTGEGLEELINKIKSIL 362
             IS  TG GLE+L   +  + 
Sbjct: 356 VSISVKTGAGLEDLRQALTELA 377


>gi|153814328|ref|ZP_01966996.1| hypothetical protein RUMTOR_00538 [Ruminococcus torques ATCC 27756]
 gi|145848724|gb|EDK25642.1| hypothetical protein RUMTOR_00538 [Ruminococcus torques ATCC 27756]
          Length = 727

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 78/193 (40%), Gaps = 27/193 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGYLVKISDTAG 276
            +  + G+ N GK+++FNAL   +   V + PG T +     +   + +   +K++D  G
Sbjct: 3   IRAALAGNPNCGKTTMFNALTGANQ-YVGNWPGVTVEKKEGKVRTKESKEEKIKVTDLPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFIGTKSD 330
           +        +E + R ++  E+ D+I+ L +  + +   +         +  +     +D
Sbjct: 62  VYSLSPYTLEEVVSRDYILNEDPDVIINLVDATNIERNLYLTTQLTETGVPVVIALNMAD 121

Query: 331 LYSTYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           L      + D               S+    GL+ELI +    + +  K +P +I S + 
Sbjct: 122 LIRKRGMKIDKKRLSELLNCPVIETSALKKTGLKELIEETVCTVKSGEKSIPKAIFSKE- 180

Query: 379 HLYHLSQTVRYLE 391
               L   +R +E
Sbjct: 181 ----LEAAIRAVE 189


>gi|46447400|ref|YP_008765.1| hypothetical protein pc1766 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401041|emb|CAF24490.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 444

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 77/220 (35%), Gaps = 25/220 (11%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDIS--SHISQGKLGEIIRNGYKI-VILGHSNAGKSSLF 236
           E E       + +   +  L+ +I     + + +    +R+   +  I+G++NAGKS+L 
Sbjct: 178 EGEKQIEIDKRILKRKMDVLQKEIDDVKAVRETQRLSRVRSAIPVFAIIGYTNAGKSTLL 237

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
           NAL    V  V D    T D  T    L     + I DT G       +     K T  E
Sbjct: 238 NALTDAGV-FVEDKLFATLDTTTRKFTLPNNQDILIVDTVGFIRKLPHLLVAAFKSTLEE 296

Query: 296 VENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYS--------TY 335
              AD++L L +++                         I +  K D             
Sbjct: 297 AIEADILLHLIDVSHPMAEEQAATTYEVLQELGAGKKPIITVLNKIDQCEHPHMIHRIRM 356

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           +   +  IS+    G EEL   +   LS + +   F IP 
Sbjct: 357 SYPKNVQISALKKIGFEELQEAMIQELSRQRQVAEFRIPQ 396


>gi|113476463|ref|YP_722524.1| ferrous iron transport protein B [Trichodesmium erythraeum IMS101]
 gi|110167511|gb|ABG52051.1| ferrous iron transport protein B [Trichodesmium erythraeum IMS101]
          Length = 606

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           K+ ++G  N GKS+ FN +     A V + PG T D+   ++ +   + +  D  GI   
Sbjct: 19  KVALIGMPNTGKSTFFNRITGVS-AHVGNWPGITVDLFQAEVKINKEITQFIDLPGIYNF 77

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFP-----KNIDFIFIGTKSDLYST 334
           +   E E + + FLE    DL++++   +   ++I  P       +  + +   SD    
Sbjct: 78  NGFSEDEKVVQNFLENNPVDLVIVVINSSQIDRQIMLPLQVKSLGLPAVLMLNMSDEAKQ 137

Query: 335 YTEEYDH 341
           Y  + D 
Sbjct: 138 YGIKIDK 144


>gi|313638128|gb|EFS03389.1| GTP-binding protein HflX [Listeria seeligeri FSL S4-171]
          Length = 407

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 112/314 (35%), Gaps = 33/314 (10%)

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLT 166
           A       RA +   ID  +       + ++++    +++       L          L+
Sbjct: 84  ATQVRNISRAVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYK-YLLPRLSGQGVLLS 142

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            +   I +      + ++     +E ++DI      +  H  +       ++ ++  ++G
Sbjct: 143 KLGGGIGSRGPGETKLEMDKRHIREKMHDIKAQLTHVEQHRKRIIDRRNGQSVFRFGLIG 202

Query: 227 HSNAGKSSLFNALAK----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           ++NAGKS++FN L      ++  +   +  TTR +        G+   ++DT G  +   
Sbjct: 203 YTNAGKSTIFNRLTNETTLEEDKLFATLDPTTRKISF----SGGFQALLTDTVGFIQDLP 258

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSD 330
                  + T  E  N D+++ + + +    +                +I  + +  K D
Sbjct: 259 TTLIAAFRSTLEETANVDVLIHVVDASDLDYLQHETTVLVLLEELEMNHIPILTVYNKMD 318

Query: 331 LYST--YTEEYDHLIS--------SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
             +     +  +H++         S   + + ELI K  +  + +  +      +  +  
Sbjct: 319 QVAENFIPDRPEHILISALNEKAPSIIKQRMIELIEKNWTFFTKELSEANGKELAQIKQQ 378

Query: 381 YHLSQTVRYLEMAS 394
             +++ + YLE   
Sbjct: 379 AWITK-LEYLENKQ 391


>gi|303238941|ref|ZP_07325472.1| ferrous iron transport protein B [Acetivibrio cellulolyticus CD2]
 gi|302593574|gb|EFL63291.1| ferrous iron transport protein B [Acetivibrio cellulolyticus CD2]
          Length = 682

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 76/204 (37%), Gaps = 24/204 (11%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
            +I     + I G+ N GK+ LFNAL       V + PG T +      + +   + + D
Sbjct: 5   NLIDKEIVLAIAGNPNCGKTVLFNALTGA-RQHVGNWPGVTVEKKEGSFNFKNRSITVVD 63

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGT 327
             G        E E + R ++  E  D++L + +  + +            + + +    
Sbjct: 64  LPGTYSLGAYSEDEAVARDYILFERPDVVLNVIDSTNIERNLYLTCQLLEMDANVVLALN 123

Query: 328 KSD--LYSTYTEEYDHLISSF----------TGEGLEELINKIKSILSNKFKKLPFSIPS 375
             D  L      +  H+ S             GEG++E+++++    S++    P  I  
Sbjct: 124 MYDEALSKKIHIDIKHISSILGVPIVTTVATKGEGIDEMLSQVLKS-SHENSYKPICINY 182

Query: 376 HKRHLYHLSQTVRYLEMASLNEKD 399
            K     + + +  L++    E +
Sbjct: 183 GK----DIEEAINLLQVEIEKESE 202


>gi|260893073|ref|YP_003239170.1| small GTP-binding protein [Ammonifex degensii KC4]
 gi|260865214|gb|ACX52320.1| small GTP-binding protein [Ammonifex degensii KC4]
          Length = 609

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R    + ++G  N GKS+LFN L       V + PG T +         G+  ++ D  
Sbjct: 1   MRRAVTVALVGSPNVGKSTLFNTLTGSYQQ-VGNWPGKTVEKKEGFCCFGGFTFRLVDLP 59

Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
           G    +    +E + R FL   + D++++L +  
Sbjct: 60  GTYSLNARSAEEEVTRDFLLAGSPDVVVVLVDAT 93


>gi|254561989|ref|YP_003069084.1| GTPase [Methylobacterium extorquens DM4]
 gi|254269267|emb|CAX25233.1| putative GTPase (HflX) [Methylobacterium extorquens DM4]
          Length = 471

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 81/221 (36%), Gaps = 31/221 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   +  ++ D+ +      L    R       + ++G++NAGKS+LFNAL K 
Sbjct: 192 EADRRMIQERMTRIERDLEAVTRTRGLHRKSRARVPYPIVALVGYTNAGKSTLFNALTKA 251

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V     +  T            G  V +SDT G             + T  +V  AD++
Sbjct: 252 EVRAQDMLFATLDPTARATKLPHGETVILSDTVGFISDLPTSLIAAFRATLEDVIEADIL 311

Query: 303 LLLKEINSKKEISFPKN--------------IDFIFIGTKSDLYST-------------- 334
           L +++++     +  ++                 I +  K+DL                 
Sbjct: 312 LHVRDVSHGDTQAQAEDVEGVLRELGIEADAERIIEVWNKADLLDEGERTRLLNLSAAHR 371

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                  L+S+ TGEGL EL  +I+  ++        ++P 
Sbjct: 372 GAGPAPILVSALTGEGLPELTERIEGQVARARSTFAVTLPP 412


>gi|307109146|gb|EFN57384.1| hypothetical protein CHLNCDRAFT_142788 [Chlorella variabilis]
          Length = 959

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279
            I I G  NAGKSSL N + + + +IV   PGTT D   + ++L      K+ DTAGI E
Sbjct: 516 NIGIFGCMNAGKSSLMNRVTRSETSIVDSTPGTTADTKVVLMELHDVGPAKLFDTAGIDE 575

Query: 280 TDDIVEKEGIKRTFLEVEN 298
              + EK+  ++    ++ 
Sbjct: 576 EGALGEKK-RRKVLSVIKE 593


>gi|149181953|ref|ZP_01860441.1| GTP-binding protein (hflX) [Bacillus sp. SG-1]
 gi|148850392|gb|EDL64554.1| GTP-binding protein (hflX) [Bacillus sp. SG-1]
          Length = 359

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 20/202 (9%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
           +++ ++G++NAGKS+LFN ++  + +   +    T D LT  L L  GY   ++DT G  
Sbjct: 140 FQLALMGYTNAGKSTLFNRISIAE-SYEENQLFATLDPLTRKLILPSGYSALVTDTVGFI 198

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIG 326
           +          + T  EV+ ADL+L + + ++              E     +I  + I 
Sbjct: 199 QDLPTALVAAFRSTLEEVKEADLLLHVVDSSNPDYNNHEKTVQSLLEELKMDHIPQLTIY 258

Query: 327 TK-----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
            K      D     + E    IS+   E    L +KI+ ++  + +     +PS++  L 
Sbjct: 259 NKRDEMHPDFVPDSSNEKII-ISALNEEDRTVLKDKIEELVIEQMEAYHVHLPSNEGKLL 317

Query: 382 HLSQTVRYLEMASLNEKDCGLD 403
              +    L     NE+    +
Sbjct: 318 SQLKNETILRKLEFNEETHTYE 339


>gi|194336789|ref|YP_002018583.1| GTP-binding proten HflX [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309266|gb|ACF43966.1| GTP-binding proten HflX [Pelodictyon phaeoclathratiforme BU-1]
          Length = 434

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 101/263 (38%), Gaps = 29/263 (11%)

Query: 135 ISSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           I +++   +    +  +   L  L GQW    TH+        +    E       + V 
Sbjct: 119 IRAQSAQAKMQVELAQLEYMLPRLSGQW----THLSKQKGGIGNKGPGETQIETDRRLVR 174

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           N I  LK  +     Q       R    ++ ++G++NAGKS+L NAL  +  A   +   
Sbjct: 175 NRIALLKKKLREVSLQHDTQTRGRQTVPRVSLVGYTNAGKSTLMNALCPEAEAFAENRLF 234

Query: 253 TTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--- 308
            T D  T  L+L    LV +SDT G          E  K T  EV  AD +L + +I   
Sbjct: 235 ATLDTKTRRLELNINKLVLLSDTVGFIRKLPHTLVESFKSTLDEVLQADFLLHVIDISHP 294

Query: 309 ----------NSKKEISFPKNIDFIFIGTKSD------LYSTYTEEYD--HLISSFTGEG 350
                     ++ KEI    + + I +  K D      +  T +E+Y     IS+  G  
Sbjct: 295 GFEDQMQIVRDTLKEIGV-GHDNIIDVFNKIDALEDPSILRTMSEKYPDAVFISARRGLN 353

Query: 351 LEELINKIKSILSNKFKKLPFSI 373
           L  L   I   ++  + +   S+
Sbjct: 354 LSLLKEMIGQQVARDYSERKISV 376


>gi|317500043|ref|ZP_07958278.1| ferrous iron transporter B [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087726|ref|ZP_08336652.1| ferrous iron transporter B [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316898528|gb|EFV20564.1| ferrous iron transporter B [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409707|gb|EGG89143.1| ferrous iron transporter B [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 727

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 78/193 (40%), Gaps = 27/193 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGYLVKISDTAG 276
            +  + G+ N GK+++FNAL   +   V + PG T +     +   + +   +K++D  G
Sbjct: 3   IRAALAGNPNCGKTTMFNALTGANQ-YVGNWPGVTVEKKEGKVRTKESKEEKIKVTDLPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFIGTKSD 330
           +        +E + R ++  E+ D+I+ L +  + +   +         +  +     +D
Sbjct: 62  VYSLSPYTLEEVVSRDYILNEDPDVIINLVDATNIERNLYLTTQLTETGVPVVIALNMAD 121

Query: 331 LYSTYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           L      + D               S+    GL+ELI +    + +  K +P +I S + 
Sbjct: 122 LIRKRGMKIDKKRLSELLNCPVIETSALKKTGLKELIEETVCTVKSGEKSIPKAIFSKE- 180

Query: 379 HLYHLSQTVRYLE 391
               L   +R +E
Sbjct: 181 ----LEAAIRAVE 189


>gi|223041593|ref|ZP_03611792.1| GTP-binding protein hflX [Actinobacillus minor 202]
 gi|223017568|gb|EEF15980.1| GTP-binding protein hflX [Actinobacillus minor 202]
          Length = 456

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 139/415 (33%), Gaps = 69/415 (16%)

Query: 49  SLRYFFGLDGRIL------DKGLL--IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA 100
           SL +    DG ++      D+ +L  + F S +    E+ AEF      A V  IL  L 
Sbjct: 11  SLGFVSSEDGDVIEHSHDQDRAILVHLFFSSHKDV--ENLAEFKTLAESAGVE-ILSTLT 67

Query: 101 KMPNLRLAN------PGEFSRRAFE---------NGKIDLLEAESLADLISSETEMQRRL 145
                            E  ++A E         N ++   +  +L  L       +  L
Sbjct: 68  TTRAAPHIKYFVGQGKAEEIKQAVEDLNATVVLVNHELSPSQTRNLQSLCQCRVVDRTGL 127

Query: 146 SM-------EGMSGELSSLYGQWIDKLTHIRSFI---------EADLDFSEEEDVQNFSS 189
            +           G+L     Q     T +   +            L    E  ++    
Sbjct: 128 ILDIFAQRARSHEGKLQVELAQLKHLSTRLVRRLGNQDQQKGGAVGLRGPGETQLET-DR 186

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKKDVAI 246
           + +   I  L+N ++    Q +     R   +   + ++G++NAGKS+LFNA+ +  V  
Sbjct: 187 RLIKVRIQQLQNRLAKVSKQREQNRKTRQKADIPTVSLVGYTNAGKSTLFNAITQAGV-Y 245

Query: 247 VTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
             D    T D     + ++      ++DT G             K T  E   A L+L +
Sbjct: 246 AADQLFATLDPTLRKMQIQDVGTTILADTVGFIRFLPHDLVSAFKATLQETIEASLLLHV 305

Query: 306 KEINSKK------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLIS 344
            +++  +            +     +I  I +  K D     T   +           +S
Sbjct: 306 IDVSDDRKNENITAVNQVLDEIGALDIPSILVFNKVDRLEGITPFIERDEEGRVTAVYLS 365

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           + TGEG+E L   I+  L N+       +P     +Y L +    L+    NE  
Sbjct: 366 AHTGEGIELLYEAIRERLRNEMIVETVLLPPTAGAIYTLFKQQNCLKSEQFNEFG 420


>gi|153003095|ref|YP_001377420.1| HSR1-like GTP-binding protein [Anaeromyxobacter sp. Fw109-5]
 gi|152026668|gb|ABS24436.1| GTP-binding protein HSR1-related [Anaeromyxobacter sp. Fw109-5]
          Length = 599

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 72/190 (37%), Gaps = 23/190 (12%)

Query: 198 FLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            L+  I +  S  +L    RNG     + I+G++NAGKS+L NAL    V +  D    T
Sbjct: 354 ALERRIEALGSSRQLRRKQRNGRGLPVLSIVGYTNAGKSTLLNALTDSAV-LAEDKLFAT 412

Query: 255 RDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D  +  L       V I+DT G             + T  E+ +ADL+L + + +  + 
Sbjct: 413 LDPTSRRLRFPRDREVIITDTVGFIRDLPPDLVNAFRATLEELSDADLLLHVVDASDPRH 472

Query: 314 ISFP------------KNIDFIFIGTKSDLYSTYTEEY------DHLISSFTGEGLEELI 355
                           +    + +  K+D                  +S+ + +GL EL+
Sbjct: 473 PEQIEAVETILASLGLEQKQRLLVFNKADRLPPGEGAALAHRAEGIAVSALSRDGLAELL 532

Query: 356 NKIKSILSNK 365
           +    +L   
Sbjct: 533 HLCDRLLWED 542


>gi|307297311|ref|ZP_07577117.1| ribosome biogenesis GTP-binding protein YsxC [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916571|gb|EFN46953.1| ribosome biogenesis GTP-binding protein YsxC [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 190

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 29/185 (15%)

Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
             + +  S+G+    +R   +I   G SN GKSSL N+L  + +A  +  PG TR +   
Sbjct: 7   ELVRTVFSKGEYPPPLRR--EIAFAGRSNVGKSSLLNSLFGRKLAKTSSTPGKTRSINFY 64

Query: 261 DLDLEGYLVKIS--DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEIS 315
            ++ E Y V +     A    ++    K+ I   F   E   L+++L +I       +I 
Sbjct: 65  GVNREIYFVDLPGYGYAKASMSEREKWKKLIIDYFESREELSLVVVLVDIRHPLQPADIQ 124

Query: 316 FPK-----NIDFIFIGTKSD-----------------LYSTYTEEYDHLISSFTGEGLEE 353
             +      I FI + TK+D                 L S        ++S+   +G+EE
Sbjct: 125 MLEWVTYYTIPFILVLTKADKLSRNQQIIAEKSIKDELASLGVYPPVFVVSAVKKQGIEE 184

Query: 354 LINKI 358
           L+  +
Sbjct: 185 LLIAL 189


>gi|293406034|ref|ZP_06650024.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|291426887|gb|EFE99915.1| conserved hypothetical protein [Escherichia coli FVEC1412]
          Length = 137

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261
            +S HI +  L ++  +   I I+G S AGKSSL NAL + +V  V+D+   TR+V    
Sbjct: 20  SLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVLAGTREVQRFR 78

Query: 262 LDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILLLKEINSKK 312
           L   G+ + I+D  G+ E+ D   E E + R    +   DL+L L + + + 
Sbjct: 79  LSGHGHSMVITDLPGVGESRDRDAEYEALYRDI--LPELDLVLWLIKADDRA 128


>gi|239905837|ref|YP_002952576.1| ferrous iron transport protein B [Desulfovibrio magneticus RS-1]
 gi|239795701|dbj|BAH74690.1| ferrous iron transport protein B [Desulfovibrio magneticus RS-1]
          Length = 728

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K+ + G  N GKS++FNAL     A V + PG T D L       G  + + D  G   
Sbjct: 4   IKVAVSGQPNCGKSTMFNALTGGS-ARVGNYPGITVDRLEGVYQQNGDKIHLVDLPGTYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
                 +E + R  +  E+ D+++ + +  + +
Sbjct: 63  LTSYSMEELVARNVIVDEHPDVVINMIDATALE 95


>gi|12723080|gb|AAK04321.1|AE006260_4 GTP-binding protein HflX [Lactococcus lactis subsp. lactis Il1403]
          Length = 386

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 19/230 (8%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-AIVT 248
           +  + +I      +       +        ++I ++G++NAGKSS+ NAL   D      
Sbjct: 142 RTRIENIDKALKKVEKTRENIRQKRSKSGIFRIGLIGYTNAGKSSIMNALVGLDKEQYEQ 201

Query: 249 DIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +    T D  T  + L E + V ++DT G  +       +  K T  E  N DL++ + +
Sbjct: 202 NELFATLDATTKAVKLVEDFTVSLTDTVGFIQNLPTELIKAFKSTLEESANVDLLIHVVD 261

Query: 308 INSKK------------EISFPKNIDFIFIGTKSDLYST---YTEEYDHLISSFTGEGLE 352
            ++              E     NI  + +  K D+  +    T      +S  +  G++
Sbjct: 262 ASNPHHEIHEQTVLKIMEDLKLTNIPVLNVYNKMDIAPSDFLPTLSPSLQLSIKSESGVQ 321

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
            L   I   L   F      +P  K   Y L +  +   + S+ E + G 
Sbjct: 322 WLKTAILEKLHELFDAFELELPYEK--AYQLPELRKSALVQSVVEGEKGY 369


>gi|169346833|ref|ZP_02865781.1| ferrous iron transport protein B [Clostridium perfringens C str.
           JGS1495]
 gi|169296892|gb|EDS79016.1| ferrous iron transport protein B [Clostridium perfringens C str.
           JGS1495]
          Length = 707

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 19/172 (11%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           S +S+ K     +  Y + + G+ N GKS++FNAL   +     + PG T        + 
Sbjct: 11  SLLSKEKSKGNTKEDYVVALAGNPNVGKSTVFNALTGLNQ-HTGNWPGKTVAKAEGYYEF 69

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------EI 314
           +   +KI D  G        E+E I R ++   + D+++++ +  S +          EI
Sbjct: 70  KDSTIKIVDLPGTYSLLSNSEEEEIARDYICFNDPDIVVVVADATSLERNLNLFIQISEI 129

Query: 315 SFPKNIDFIF--------IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           +    +            I    DL S          S+  G G+EEL   I
Sbjct: 130 TEKAILCVNLTDEAEKNNIKIDLDLLSKELNANLVSSSARNGVGIEELKEAI 181


>gi|319938915|ref|ZP_08013279.1| GTP-binding protein HflX [Streptococcus anginosus 1_2_62CV]
 gi|319811965|gb|EFW08231.1| GTP-binding protein HflX [Streptococcus anginosus 1_2_62CV]
          Length = 412

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 99/266 (37%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ NAL  K      ++   T D 
Sbjct: 177 RQLKIVEKNRATVREKRLDSSVFKIGLIGYTNAGKSTIMNALTNKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  ++L G   V ++DT G  +          K T  E +N DL++ + + ++      
Sbjct: 236 TTKSVNLTGRFNVTLTDTVGFIQDLPTELISSFKSTLEESKNVDLLVHVIDASNPNHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEE-----LINKI 358
            K            +I  + +  K+D    +T     +++ S   E         L+NK+
Sbjct: 296 EKTVLAIMNDLDMLDIPRLTLYNKADKAENFTPTLTPYVLISAKNENSRTVLQNALLNKM 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           + +      ++  S       L  L+
Sbjct: 356 RELFVPFRIRVSPSKAYKLHELESLA 381


>gi|282889986|ref|ZP_06298521.1| hypothetical protein pah_c008o089 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500179|gb|EFB42463.1| hypothetical protein pah_c008o089 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 451

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 79/235 (33%), Gaps = 20/235 (8%)

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
            +AF+   +D  E         ++T+  R           +    +    L+       A
Sbjct: 120 EKAFQLTVMDRTEVILEVFAQRAKTKEARLQIEYARVKYQAPRLKRLWSHLSRQHGSGGA 179

Query: 175 DL------DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228
                   +  ++ ++     K+ L  +     ++  H    ++           ++G++
Sbjct: 180 GGGAYLKGEGEKQIEIDRRLIKKRLEQLQSEIQEVKEHREIQRVARTRSAIPVFALVGYT 239

Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKE 287
           NAGKS+L NAL   DV  V D    T D  T    L  G  V ++DT G       +   
Sbjct: 240 NAGKSTLLNALTDADV-FVEDKLFATLDTTTRKFPLSTGQEVLVTDTVGFIRKLPHLLVA 298

Query: 288 GIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSD 330
             K T  E   AD++L + +      +   +            +   I +  K D
Sbjct: 299 AFKSTLEEAIQADILLHVIDATHPMALEQARTTIQVLKELGVGDKPIITVLNKID 353


>gi|32474584|ref|NP_867578.1| GTP-binding protein Hflx [Rhodopirellula baltica SH 1]
 gi|32445123|emb|CAD75125.1| GTP-binding protein Hflx [Rhodopirellula baltica SH 1]
          Length = 459

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 94/256 (36%), Gaps = 28/256 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSH-ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               +     I  LK ++ S  + + +      +   + ++G++NAGKS+L NAL    V
Sbjct: 167 EVDRRLAQKRIHDLKTELKSVELRRERQVAARSDSPTVSLVGYTNAGKSTLMNALTDAGV 226

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D  T    L  +  V +SDT G             K T  E   A+L+L
Sbjct: 227 M-AQDKLFATLDTRTRRWHLPEWGHVLLSDTVGFIRDLPHSLVASFKSTLEETRQAELLL 285

Query: 304 LLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTYTE--------EYDHLI 343
            + + +S +            E    +  D + +  K D  ++  +             +
Sbjct: 286 HVADASSSQVFEQISAVYQVLEELGIEAKDTLLVLNKIDAITSPRDLNRVLDRYPNAIPV 345

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
           S+ +  GL+ L   +   LS +F  +   +  H   L              +  ++ G D
Sbjct: 346 SARSRSGLKPLAQAVGEALSREFLDVEIGVAHHDGKLLSFLSA-----TGKIESREFGND 400

Query: 404 IIAENLRLASVSLGKI 419
            +   +R+ + ++G +
Sbjct: 401 HVIVRVRMPASAMGTV 416


>gi|328765862|gb|EGF75964.1| hypothetical protein BATDEDRAFT_93174 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 301

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 28/170 (16%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKSS  N L   +VA +   PG T   +   +  +   +   DT G+   DDI
Sbjct: 1   MIGDVNTGKSSTVNQLIGDEVAPIGARPGETIG-IDRYVYRD--KIIFVDTPGL---DDI 54

Query: 284 VEKEGIKRTFLEVENADLILL-------LKEINSKK--EISFPKNIDFIFIGTKSDLYST 334
             K   + T    E+AD+IL        +     +K  EI   KN + +F+  K D    
Sbjct: 55  NSKNS-EETLDFFEDADVILFFLNAAGTVFSDGERKSLEIIEKKNKNILFVLNKIDAADD 113

Query: 335 YTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 +             ISS TGE +++L ++I  IL  K K++ F+
Sbjct: 114 IPSLVKYVKDHSNNQYKVIPISSKTGENIDKLRSEILEILKKKHKEIQFA 163


>gi|289806978|ref|ZP_06537607.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 28

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440
             SL +ITG    + LL  IFS FCIGK
Sbjct: 1   QQSLSEITGEFTSDDLLGRIFSSFCIGK 28


>gi|193222286|emb|CAL61445.2| GTP-binding protein HflX [Herminiimonas arsenicoxydans]
          Length = 372

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 72/200 (36%), Gaps = 25/200 (12%)

Query: 197 LFLKNDISSHISQ---GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             L+  +     Q    +      N + + ++G++NAGKS+LFNALAK    +  D    
Sbjct: 164 KALRAKLEKLHKQHITQRRARGRNNAFSVSLVGYTNAGKSTLFNALAKT-KMLAADQLFA 222

Query: 254 TRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  +  + L     V ISDT G             + T  E  +ADL+L + +  S  
Sbjct: 223 TLDTTSRRIYLGEAGNVVISDTVGFIRELPHQLVAAFRATLEETIHADLLLHVVDGASPA 282

Query: 313 EISFPK------------NIDFIFIGTKSDLY--------STYTEEYDHLISSFTGEGLE 352
            +   +             I  I +  K D            Y +     IS+ TG GL+
Sbjct: 283 RMEQIEEVNAVLREIGADQIPQILVWNKIDAAGLEPALERDEYDKIRRVFISAQTGSGLD 342

Query: 353 ELINKIKSILSNKFKKLPFS 372
            L   I      +   L   
Sbjct: 343 LLREAIAECAKERAAGLEDV 362


>gi|168183544|ref|ZP_02618208.1| GTP-binding protein [Clostridium botulinum Bf]
 gi|237796683|ref|YP_002864235.1| ribosome biogenesis GTP-binding protein YsxC [Clostridium botulinum
           Ba4 str. 657]
 gi|182673313|gb|EDT85274.1| GTP-binding protein [Clostridium botulinum Bf]
 gi|229260786|gb|ACQ51819.1| GTP-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 194

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 28/187 (14%)

Query: 200 KNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAI-VTDIPGTTRDV 257
                  IS  K G+   +G  +I  +G SN GKS+L N L  +   + V+  PG TR +
Sbjct: 5   IKKAEFVISAVKRGQYPEDGRPEIAFVGRSNVGKSTLINTLTNRRKLVKVSSTPGKTRLI 64

Query: 258 LTIDLDLEGYLVKIS--DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               ++   Y V +     A + + +       +++  +E      I+LL +   K    
Sbjct: 65  NFFLINDNMYFVDLPGYGYAKVSKKEKENWGYIMEQYLVERNQLKKIVLLVDSRHKPTSD 124

Query: 316 FPK--------NIDFIFIGTKSDLYSTY----------------TEEYDHLISSFTGEGL 351
                      N + + +GTK D                      ++   LISS + EG 
Sbjct: 125 DINMYNWIKHYNYEVLVVGTKLDKLKRNDINKNKKIIRDTLKMDKDDKILLISSLSKEGK 184

Query: 352 EELINKI 358
           EE++ +I
Sbjct: 185 EEVLEQI 191


>gi|330939868|gb|EGH43098.1| GTP-binding protein HflX [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 433

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 91/253 (35%), Gaps = 25/253 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN++   DV    D    T
Sbjct: 174 QIKGRLEKVRSQRDQARRGRRRADIPSVSLVGYTNAGKSTLFNSVTDSDV-FAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L+    + ++DT G          E  + T  E  N+DL+L + + +    
Sbjct: 233 LDPTLRRLQLDDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDSHEPDR 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +S              + +  + +  K DL      +             +S+  G GL+
Sbjct: 293 MSQIEQVMAVLGEIGAEGLPILEVYNKLDLLEGVEPQIQRDADGKPQRVWVSARDGRGLD 352

Query: 353 ELINKIKSILSNK 365
            L   I  +L + 
Sbjct: 353 LLKQAIAELLGDD 365


>gi|322389857|ref|ZP_08063398.1| GTP-binding protein HflX [Streptococcus parasanguinis ATCC 903]
 gi|321143438|gb|EFX38875.1| GTP-binding protein HflX [Streptococcus parasanguinis ATCC 903]
          Length = 395

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 96/275 (34%), Gaps = 26/275 (9%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 97  RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 156

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  +    +   +    +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 157 RQLKAVEKNRETLREKRLESPVFKIGLIGYTNAGKSTIMNQLTSKSQYEADELFA-TLDA 215

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 216 TTKSIHLTGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPNHEEH 275

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSIL 362
            K             I  + +  K+D  + +T        IS+ +    E+L   +   L
Sbjct: 276 EKTVLSIMKDLDMLEIPRLTLYNKADKVADFTPTQTPFSLISARSETAREDLQALLLEKL 335

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
              F      +P  K +  H  +TV  ++     E
Sbjct: 336 RELFVPFTIRVPFSKSYRTHDLETVAIIDQREFEE 370


>gi|257052235|ref|YP_003130068.1| GTP-binding protein HSR1-related [Halorhabdus utahensis DSM 12940]
 gi|256690998|gb|ACV11335.1| GTP-binding protein HSR1-related [Halorhabdus utahensis DSM 12940]
          Length = 322

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 72/192 (37%), Gaps = 23/192 (11%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249
            E L  +   + ++          +I  +   IVI G+ N GKSS  N++ + D  I   
Sbjct: 135 DENLAALADARQELRKL------PDIKPDEPVIVIAGYPNVGKSSFVNSVTRADNEI-AA 187

Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN-ADLILLLKEI 308
            P TT  +    ++ +    ++ DT G+ +           +    +E+ AD +L++ + 
Sbjct: 188 YPFTTTQIHVGHIERDHIRYQLVDTPGLLDRPPAERNAIEAQAVSALEHLADAVLVMVDA 247

Query: 309 NSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           + +                S   +   + +  K+D         DH +S    + +E ++
Sbjct: 248 SGECGFPIDVQLELRDDIASRFGDAPVLTVCNKADRSRDVA--ADHYMSVTEDDNVEGVL 305

Query: 356 NKIKSILSNKFK 367
           +     +  + +
Sbjct: 306 DAAIDAVGYEPE 317


>gi|163852243|ref|YP_001640286.1| GTP-binding proten HflX [Methylobacterium extorquens PA1]
 gi|218531002|ref|YP_002421818.1| GTP-binding proten HflX [Methylobacterium chloromethanicum CM4]
 gi|163663848|gb|ABY31215.1| GTP-binding proten HflX [Methylobacterium extorquens PA1]
 gi|218523305|gb|ACK83890.1| GTP-binding proten HflX [Methylobacterium chloromethanicum CM4]
          Length = 471

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 81/221 (36%), Gaps = 31/221 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   +  ++ D+ +      L    R       + ++G++NAGKS+LFNAL K 
Sbjct: 192 EADRRMIQERMTRIERDLEAVTRTRGLHRKSRARVPYPIVALVGYTNAGKSTLFNALTKA 251

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V     +  T            G  V +SDT G             + T  +V  AD++
Sbjct: 252 EVRAQDMLFATLDPTARATKLPHGETVILSDTVGFISDLPTSLIAAFRATLEDVIEADIL 311

Query: 303 LLLKEINSKKEISFPKN--------------IDFIFIGTKSDLYST-------------- 334
           L +++++     +  ++                 I +  K+DL                 
Sbjct: 312 LHVRDVSHGDTQAQAEDVEGVLRELGIEADAERIIEVWNKADLLDEGERTRLLNLSAAHR 371

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                  L+S+ TGEGL EL  +I+  ++        ++P 
Sbjct: 372 GAGPAPILVSALTGEGLPELTERIEGQVARARSTFAVTLPP 412


>gi|330886601|gb|EGH20262.1| GTP-binding protein HflX [Pseudomonas syringae pv. mori str.
           301020]
          Length = 433

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 91/253 (35%), Gaps = 25/253 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN++   DV    D    T
Sbjct: 174 QIKGRLEKVRSQRDQARRGRRRADIPSVSLVGYTNAGKSTLFNSVTDSDV-FAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L+    + ++DT G          E  + T  E  N+DL+L + + +    
Sbjct: 233 LDPTLRRLQLDDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDSHEPDR 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +S              + +  + +  K DL      +             +S+  G GL+
Sbjct: 293 MSQIEQVMAVLGEIGAEGLPILEVYNKLDLLEGVEPQIQGDADGKPQRVWVSARDGRGLD 352

Query: 353 ELINKIKSILSNK 365
            L   I  +L + 
Sbjct: 353 LLKQAIAELLGDD 365


>gi|315222667|ref|ZP_07864556.1| GTP-binding protein HflX [Streptococcus anginosus F0211]
 gi|315188353|gb|EFU22079.1| GTP-binding protein HflX [Streptococcus anginosus F0211]
          Length = 412

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 99/266 (37%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ NAL  K      ++   T D 
Sbjct: 177 RQLKIVEKNRATVREKRLDSSVFKIGLIGYTNAGKSTIMNALTNKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  ++L G   V ++DT G  +          K T  E +N DL++ + + ++      
Sbjct: 236 TTKSVNLTGRFNVTLTDTVGFIQDLPTELISSFKSTLEESKNVDLLVHVIDASNPNHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEE-----LINKI 358
            K            +I  + +  K+D    +T     +++ S   E         L+NK+
Sbjct: 296 EKTVLAIMKDLDMLDIPRLTLYNKADKAENFTPTLTPYVLISAKNENSRTVLQNALLNKM 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           + +      ++  S       L  L+
Sbjct: 356 RELFVPFRIRVSPSKAYKLHELESLA 381


>gi|312137211|ref|YP_004004548.1| ferrous iron transport protein b [Methanothermus fervidus DSM 2088]
 gi|311224930|gb|ADP77786.1| ferrous iron transport protein B [Methanothermus fervidus DSM 2088]
          Length = 664

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 66/173 (38%), Gaps = 19/173 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           +    I ++G+ N GKS++FN+L       V + PG T +    +   +G   K+ D  G
Sbjct: 3   KKAVTIAVIGNPNTGKSTIFNSLTGLKQ-HVGNWPGVTVEKKVGEFTHKGINFKVIDLPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSD 330
           +         E I R F+      +++ + + ++ +              + + +  K D
Sbjct: 62  VYGLSAESIDEKIARDFIVKTKPKVVIDILDASNLERNLYLTLQLLEIGANVLLVLNKVD 121

Query: 331 LYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           +      E +                +  G G+E+L +KI   L+ K   L +
Sbjct: 122 IAKERGYEINAKKLGELLGIPVVTTIACEGIGIEKLKDKIVDSLNKKAPILDY 174


>gi|296330959|ref|ZP_06873434.1| putative GTP-binding protein protease modulator [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305674477|ref|YP_003866149.1| putative GTP-binding protein protease modulator [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151964|gb|EFG92838.1| putative GTP-binding protein protease modulator [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412721|gb|ADM37840.1| putative GTP-binding protein protease modulator [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 420

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 68/338 (20%), Positives = 123/338 (36%), Gaps = 43/338 (12%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSM-------EGMSGELSSLYGQWIDKL------- 165
           N ++   + +SLA  I  +   + +L +           G+L     Q    L       
Sbjct: 84  NDELSPSQLKSLATAIEVKMIDRTQLILDIFAKRARTREGKLQIELAQLQYALPRLTGQG 143

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII--RNG-YKI 222
            ++             E       + + N I  +   +S+ I           +NG  +I
Sbjct: 144 INLSRQGGGIGARGPGETKLETDRRHIRNRIHEINTQLSTVIRHRSRYRERRKKNGVLQI 203

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+ FN L   D +   D+   T D +T  + L  GY V +SDT G  +  
Sbjct: 204 ALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLSDTVGFIQDL 262

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                   + T  EV+ ADLIL L + +++  +   K            +I  +    K 
Sbjct: 263 PTTLIAAFRSTLEEVKEADLILHLIDSSNEDYVGHEKTVLRLLEELEADDIPMLTAYNKR 322

Query: 330 D--LYSTYTEE-YDHLISSFT-GEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLS 384
           D  L         DH++ S    E        I+  L  +        +P+ +  L    
Sbjct: 323 DQKLPDFIPSAGRDHIMVSAKFEEDANAFKEAIQRYLREELLTSFEAHVPASEGKLLSRI 382

Query: 385 QTVRYLEMASLNEKDCGLDI---IAENLRLASVSLGKI 419
           ++   ++    NE++   DI   + E        +G++
Sbjct: 383 KSETMVDRFYFNEENERYDISGYVQEE----QSIIGEL 416


>gi|257416477|ref|ZP_05593471.1| GTP-binding protein [Enterococcus faecalis AR01/DG]
 gi|257158305|gb|EEU88265.1| GTP-binding protein [Enterococcus faecalis ARO1/DG]
          Length = 413

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 188 SSKEVLNDILFLKNDIS---SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
             + + N IL ++ ++    +H  + +        ++I ++G++NAGKS++ N L     
Sbjct: 161 DRRHIRNKILGIRRELKEVTAHRERNRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAG- 219

Query: 245 AIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D LT    L  G  V ++DT G  +       E  + T  E    DL+L
Sbjct: 220 TYSEDQLFATLDPLTKKWQLPQGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRAMDLLL 279

Query: 304 LLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTY----TEEYDHLISSFT 347
            + + ++   +   +            NI  + +  K D   +     T   + LIS+  
Sbjct: 280 HVVDASAPDRLQHERTVQTLMKELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKI 339

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            E  E L+  I++ +    +     I      L
Sbjct: 340 PEDKERLVQAIRAQMMELLEPYQLEIRPTDGQL 372


>gi|66043840|ref|YP_233681.1| GTP-binding protein, HSR1-related [Pseudomonas syringae pv.
           syringae B728a]
 gi|71737921|ref|YP_272868.1| GTP-binding protein HflX [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|289623757|ref|ZP_06456711.1| GTP-binding protein HflX [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289672585|ref|ZP_06493475.1| GTP-binding protein HflX [Pseudomonas syringae pv. syringae FF5]
 gi|298484914|ref|ZP_07003013.1| GTP-binding protein HflX [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|302189788|ref|ZP_07266461.1| GTP-binding protein HflX [Pseudomonas syringae pv. syringae 642]
 gi|63254547|gb|AAY35643.1| GTP-binding protein, HSR1-related [Pseudomonas syringae pv.
           syringae B728a]
 gi|71558474|gb|AAZ37685.1| GTP-binding protein HflX [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298160601|gb|EFI01623.1| GTP-binding protein HflX [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330865895|gb|EGH00604.1| GTP-binding protein HflX [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330899894|gb|EGH31313.1| GTP-binding protein HflX [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330951475|gb|EGH51735.1| GTP-binding protein HflX [Pseudomonas syringae Cit 7]
 gi|330984559|gb|EGH82662.1| GTP-binding protein HflX [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 433

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 91/253 (35%), Gaps = 25/253 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN++   DV    D    T
Sbjct: 174 QIKGRLEKVRSQRDQARRGRRRADIPSVSLVGYTNAGKSTLFNSVTDSDV-FAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L+    + ++DT G          E  + T  E  N+DL+L + + +    
Sbjct: 233 LDPTLRRLQLDDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDSHEPDR 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +S              + +  + +  K DL      +             +S+  G GL+
Sbjct: 293 MSQIEQVMAVLGEIGAEGLPILEVYNKLDLLEGVEPQIQRDADGKPQRVWVSARDGRGLD 352

Query: 353 ELINKIKSILSNK 365
            L   I  +L + 
Sbjct: 353 LLKQAIAELLGDD 365


>gi|1033127|gb|AAA79801.1| ORF_o289 [Escherichia coli str. K-12 substr. MG1655]
          Length = 289

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + AGKSSL NAL   +V+ V+D+   TRD L   L +  + + I D  G+ E+ 
Sbjct: 41  IGIMGKTGAGKSSLCNALFAGEVSPVSDVAACTRDPLRFRLQIGEHFMTIVDLPGVGESG 100

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
            + + E       ++   DLIL L + + +  ++  ++     IG
Sbjct: 101 -VRDTEYAALYREQLPRLDLILWLIKADDRA-LATDEHFYRQVIG 143


>gi|226942903|ref|YP_002797976.1| GTP-binding protein HflX [Azotobacter vinelandii DJ]
 gi|226717830|gb|ACO77001.1| GTP-binding protein HflX [Azotobacter vinelandii DJ]
          Length = 433

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 25/274 (9%)

Query: 115 RRAFENGKIDLLEAESLADLISSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173
            RAFE   +D            + T E + ++ +  +    + L   W   L   +  I 
Sbjct: 94  ERAFECRVLDRTGLILDIFAQRARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIG 152

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233
                  + +      +  +  I      + S   Q + G        + ++G++NAGKS
Sbjct: 153 LRGPGETQLETDRRLLRMRIRQIRQRLEKVRSQREQARRGRRRAEIPLVSLVGYTNAGKS 212

Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRT 292
           +LFNAL    V    +    T D     L+L+    + ++DT G          E  + T
Sbjct: 213 TLFNALTASGV-YAANQLFATLDPTLRRLELDDLGALVLADTVGFIRHLPHKLVEAFRAT 271

Query: 293 FLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYD 340
             E  N+DL+L + + +  + ++  +            ++  + +  K DL      +  
Sbjct: 272 LEESSNSDLLLHVIDAHEPERMAQIEQVMAVLGEIGADHLPILEVYNKLDLLEGMEPQIQ 331

Query: 341 ---------HLISSFTGEGLEELINKIKSILSNK 365
                      +S+  G GLE L   I  +L N 
Sbjct: 332 RDVDGKPLRVWVSARDGRGLELLRQAIAELLGND 365


>gi|330960088|gb|EGH60348.1| GTP-binding protein HflX [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 433

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 103/290 (35%), Gaps = 25/290 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN++   DV    D    T
Sbjct: 174 QIKGRLEKVRSQRDQARRGRRRADIPSVSLVGYTNAGKSTLFNSITDSDV-FAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L+    + ++DT G          E  + T  E  N+DL+L + + +    
Sbjct: 233 LDPTLRRLQLDDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDSHEPDR 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +S              + +  + +  K DL      +             +S+  G GL+
Sbjct: 293 MSQIEQVMAVLGEIGAEGLPILEVYNKLDLLEGVEPQIQRDADGKPQRVWLSARDGRGLD 352

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
            L   +  +L +        +P +   L      +  ++  + +E+   L
Sbjct: 353 LLKQAVAELLGDDLFVGTLHLPQNLARLRAQFFELGAVQSETHDEEGASL 402


>gi|299469885|emb|CBN76739.1| MEra, mitochondrial Era GTPase [Ectocarpus siliculosus]
          Length = 402

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 16/128 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
               + G  NAGKS+L N +    V+ V+    TTR+     + +    V   DT G   
Sbjct: 56  LHAAVAGLPNAGKSTLLNYMVGDKVSAVSTKRHTTRENTLGVMTVGRTQVFFHDTPGFVS 115

Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIF 324
             E DD       + +   +   DL LLL + +               E       +   
Sbjct: 116 HEERDDYKPALSAE-SREAIAAVDLTLLLVDASKDVTKRGLRSLTGLLERVLRSRCEVFL 174

Query: 325 IGTKSDLY 332
           +  KSDL 
Sbjct: 175 VLNKSDLV 182


>gi|225848212|ref|YP_002728375.1| ribosome biogenesis GTP-binding protein YsxC [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644647|gb|ACN99697.1| ribosome biogenesis GTP-binding protein YsxC [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 194

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 26/169 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT--AGIRE 279
           + ++G SN GKSSL NA+ K+ VA V+  PG TR +    L+ + Y V +     A + +
Sbjct: 26  VAVVGRSNVGKSSLINAIFKRSVAKVSSTPGKTRLINFFTLNNDIYFVDLPGYGFASVSQ 85

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNID-----FIFIGTKSDL 331
            + +  ++ I+   L  EN  LI++L +     +  +I   + +D     +  +GTK D 
Sbjct: 86  KERLSWQKMIENYLLNRENLKLIIMLVDTRYPPTNLDILMKQWLDTFEKQYFVVGTKIDK 145

Query: 332 YSTYTEE----------------YDHLISSFTGEGLEELINKIKSILSN 364
            +   +                    L+S+  G G++ L+++I   +  
Sbjct: 146 LNQSEKAKAKKVIKETLDLDDNTPIFLVSAKEGTGIDNLVSEIFKAVKE 194


>gi|82523900|emb|CAI78623.1| ferrous ion uptake system protein FeoB (predicted GTPase)
           [uncultured delta proteobacterium]
          Length = 693

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 83/206 (40%), Gaps = 22/206 (10%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
            + ++  +  ++G+ N+GK+++FN +       V +  G T +     ++ +G+ ++I+D
Sbjct: 6   RMHKDTIRAALIGNPNSGKTTIFNEITGA-RQKVGNWAGVTVEKKEGYIEHKGHKIEITD 64

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGT 327
             G         +E + R F+  E  D+++ + + +S +   +        +I  IF   
Sbjct: 65  LPGTYSLTAYSIEEIVSRNFILDEKPDVVIDVIDSSSIERSLYLATQLIELDIKLIFALN 124

Query: 328 KSDL------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
             D+             +              G G+++L+ KI  +  ++         +
Sbjct: 125 MMDIAISKGYQINRERLAELLGVPVVFTVGNKGSGVDDLLEKIVEVAEDRNTVSRHIHIA 184

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCG 401
           + R    + + ++ ++ A   + + G
Sbjct: 185 YGR---EVEKEIKDIQSALWQDPEIG 207


>gi|260797445|ref|XP_002593713.1| hypothetical protein BRAFLDRAFT_64000 [Branchiostoma floridae]
 gi|229278941|gb|EEN49724.1| hypothetical protein BRAFLDRAFT_64000 [Branchiostoma floridae]
          Length = 570

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 104/301 (34%), Gaps = 37/301 (12%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            + T+  R          L     + +  L   R  +       E    +    + +   
Sbjct: 255 HARTKEARMQIALAEIPYLKMRISEEVANLDQQRGGVRTRGGGGET--FRELRKRVLKQK 312

Query: 196 ILFLKNDISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
              +K  +     +    + G   +    + ++G++N+GK++L  AL  ++     D   
Sbjct: 313 ETAIKKALVRLKKKRDLLRSGRTKKEIPVVSVVGYTNSGKTTLIKALTGEERIQPQDQLF 372

Query: 253 TTRDVLTIDLDLEGYLVKI-SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T DV      L   +  +  DT G               T  +V  +DLI+ +++++  
Sbjct: 373 ATLDVTAHAGQLPSKMTALYVDTVGFLSQLPHHLIASFNATLEDVRLSDLIVHIRDVSHP 432

Query: 312 K-------------EISFPKNIDFIFIG--TKSDLY---STYTEEYD---HLISSFTGEG 350
                          +  P+++    I    K DL    S+  EE D     IS+  G G
Sbjct: 433 DTVNQKHNVLQVLSNLKLPQHLLDNMIEANNKIDLLDGESSVPEEDDSTVINISALKGTG 492

Query: 351 LEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           L+ L + ++  L      +  +  IP   + L  L +T      A++       D  AE+
Sbjct: 493 LDRLRDVVEERLFEATDTVKTTLRIPMAGQQLSQLYKT------ATVQGVQVTED--AEH 544

Query: 409 L 409
           L
Sbjct: 545 L 545


>gi|195112134|ref|XP_002000631.1| GI10336 [Drosophila mojavensis]
 gi|193917225|gb|EDW16092.1| GI10336 [Drosophila mojavensis]
          Length = 367

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 89/220 (40%), Gaps = 9/220 (4%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE---IIRNG-Y 220
           +    + IE ++  +++     +    +   +   ++ +     +G+ GE   ++++G  
Sbjct: 3   ILEKIAEIEREIARTQKNKATEYHLGLLKAKLAKYRSQLLEPAKKGEKGEGFDVLKSGDA 62

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  + GKS++ + L K + +   +   TT   +   ++ +G  +++ D  GI E 
Sbjct: 63  RVALIGFPSVGKSTMLSTLTKTE-SEAANYEFTTLTCIPGVIEYQGANIQLLDLPGIIEG 121

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNIDFIFIGTKSDLYSTYTE 337
               +  G ++       ADL+L++ +       +E+   +         K      + +
Sbjct: 122 AAQGKGRG-RQVIAVARTADLVLMMLDATKPNVHRELLERELESVGIRLNKRKPNIYFKQ 180

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +    +S  +   L     K+  ++ + FK     +   +
Sbjct: 181 KKGGGLSFNSTCALTRCSEKMVQMILHSFKIFNAEVLFRE 220


>gi|304314423|ref|YP_003849570.1| ferrous iron transport protein B [Methanothermobacter marburgensis
           str. Marburg]
 gi|302587882|gb|ADL58257.1| predicted ferrous iron transport protein B [Methanothermobacter
           marburgensis str. Marburg]
          Length = 636

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 73/192 (38%), Gaps = 21/192 (10%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           ++   + + G++N GKS +FN L   +  IV + PG T +     L  +G  + I D  G
Sbjct: 3   KSEITVALAGNANVGKSVIFNQLTGSNQ-IVGNWPGKTVERAEGYLKFQGRDIHIIDLPG 61

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFIGTKSD 330
           I        +E + R F+  E  D+++ + + +  +   F         +  +    + D
Sbjct: 62  IYSFSTYSMEEIVSREFIVNEKPDVVINVLDASVLERNLFFTLQLMEMEVPMVICINQVD 121

Query: 331 LYSTYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        D                +  G+GL++L+ K   +   + K  P  I   + 
Sbjct: 122 MARQKGIVIDEKKLEGALGVPVVSTVAVKGQGLQKLLRKTLEVADKRIK--PEVIEYGEE 179

Query: 379 HLYHLSQTVRYL 390
               + + +  L
Sbjct: 180 VESRIRKLMEAL 191


>gi|307825475|ref|ZP_07655693.1| ferrous iron transport protein B [Methylobacter tundripaludum SV96]
 gi|307733361|gb|EFO04220.1| ferrous iron transport protein B [Methylobacter tundripaludum SV96]
          Length = 781

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 81/217 (37%), Gaps = 27/217 (12%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           ++  + + ++G+ N GK++LFNAL       V + PG T +  T     +  L+++ D  
Sbjct: 1   MKTDFTVGVVGNPNCGKTTLFNALTGA-RQHVGNWPGVTVEKKTGAYSFDHKLIELVDLP 59

Query: 276 GIRE----TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFI 325
           G        D +   E + R ++  + ADLI+ + + ++ +             +  I +
Sbjct: 60  GTYSLEAADDQVSLDEKVARDYVASKQADLIINIVDASNLERNLYLTAQLIEMRVPMILV 119

Query: 326 GTKSDLYSTYTEEYDHLI-------------SSFTGEGLEELINKIKSILSNKFKKLPFS 372
               D       + D                +S  G G+  L + I S      K +P  
Sbjct: 120 LNMMDAVKQRGIKIDVDFLEQFLGCPVIPITASIKG-GIGTLKSAINSAAI--VKPIPSV 176

Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
             ++   L      +  L + S  +  C L  +A  L
Sbjct: 177 KITYTPALEQAINDISPLLLESAQQNRCDLRWLAVRL 213


>gi|239999077|ref|ZP_04719001.1| GTP-binding protein [Neisseria gonorrhoeae 35/02]
 gi|240080577|ref|ZP_04725120.1| GTP-binding protein [Neisseria gonorrhoeae FA19]
 gi|240113055|ref|ZP_04727545.1| GTP-binding protein [Neisseria gonorrhoeae MS11]
 gi|240123658|ref|ZP_04736614.1| GTP-binding protein [Neisseria gonorrhoeae PID332]
 gi|240125848|ref|ZP_04738734.1| GTP-binding protein [Neisseria gonorrhoeae SK-92-679]
 gi|317164369|gb|ADV07910.1| GTP-binding protein [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 374

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 71/213 (33%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDV 244
             +   + I  LK  +++   Q  L    R   +I    ++G++N GKSSLFN L K  +
Sbjct: 162 DRRLTAHRINALKKQLANLKKQRALRRKSRESGRIKTFALVGYTNVGKSSLFNRLTKSGI 221

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 222 YAKDQLFATLDTTARRLYISPACSIILTDTVGFVSDLPHKLISAFSATLEETAQADVLLH 281

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 282 VVDAAAPNSGQQIEDVENVLQEIHAHDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 341

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 342 RISVAENTGIDALREAIAEYCAAAPNTDETEMP 374


>gi|89107126|ref|AP_000906.1| predicted GTP-binding protein [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111103|ref|NP_414787.4| CP4-6 prophage; predicted GTP-binding protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|170079878|ref|YP_001729198.1| CP4-6 prophage; GTP-binding protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|238899641|ref|YP_002925437.1| CP4-6 prophage; putative GTP-binding protein [Escherichia coli
           BW2952]
 gi|2495488|sp|P75678|YKFA_ECOLI RecName: Full=Uncharacterized protein ykfA
 gi|1552820|gb|AAB08672.1| similar to E. coli ORF_o289 [Escherichia coli]
 gi|85674399|dbj|BAA77923.2| predicted GTP-binding protein [Escherichia coli str. K12 substr.
           W3110]
 gi|87081706|gb|AAC73356.2| CP4-6 prophage; predicted GTP-binding protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|169887713|gb|ACB01420.1| CP4-6 prophage; predicted GTP-binding protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|238860646|gb|ACR62644.1| CP4-6 prophage; predicted GTP-binding protein [Escherichia coli
           BW2952]
 gi|260450551|gb|ACX40973.1| GTP-binding protein HSR1-related protein [Escherichia coli DH1]
 gi|315134938|dbj|BAJ42097.1| CP4-6 prophage; putative GTP-binding protein [Escherichia coli DH1]
          Length = 287

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 2/105 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G +  GKSSL NAL   D++ V+D+   TR+ L   L +    + + D  G+ E+ 
Sbjct: 39  IGIMGKTGVGKSSLCNALFAGDISPVSDVAACTREPLRFRLQVGDRYITLMDLPGVGESG 98

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
               +        ++   DL+L L + + +  ++  ++     IG
Sbjct: 99  ARDTEYAAL-YREQLPRLDLVLWLIKADDRA-LTVDEHFYHQVIG 141


>gi|261350269|ref|ZP_05975686.1| gtp-binding protein, Gtp1/obg family [Methanobrevibacter smithii
           DSM 2374]
 gi|288861054|gb|EFC93352.1| gtp-binding protein, Gtp1/obg family [Methanobrevibacter smithii
           DSM 2374]
          Length = 336

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 24/174 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IVI G  N GKS+L N ++  D  I  + P TT+ +    ++     ++I DT G+ +  
Sbjct: 165 IVIAGFPNVGKSTLLNQISGADPQI-ANYPFTTKGIQIGHVERHWKSIQIIDTPGLLDRP 223

Query: 282 DIVEKEGIKRTFLEVEN-ADLILLLKEINS-------------KKEISFPKNIDFIFIGT 327
            +   +      + +E+ AD IL + + +              K+      NI  I++  
Sbjct: 224 VLEMNDIELNAIVALEHLADAILFIFDASETCGFGLESQYNLLKQIEKIFDNIPVIYLFN 283

Query: 328 KSDLY------STYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL         Y +E D    IS+  GEG+++ INK+   +    +      
Sbjct: 284 KMDLIEDTSYVEQYVDELDNSIFISAIEGEGIDK-INKVLDSVKKIERNEEEEY 336


>gi|149913471|ref|ZP_01902004.1| GTP-binding protein Era [Roseobacter sp. AzwK-3b]
 gi|149812591|gb|EDM72420.1| GTP-binding protein Era [Roseobacter sp. AzwK-3b]
          Length = 302

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 76/205 (37%), Gaps = 24/205 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGESQLVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           + +    +++  +   +    +AD+I+LL E +           ++     K        
Sbjct: 63  LFQPRRRLDRAMVAAAWGGAADADVIVLLIEAHRGITEGVERILERLQDVGKGRTVALAI 122

Query: 327 TKS-------------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
            K              DL + ++     +IS+  G G+E+L   +   +       P   
Sbjct: 123 NKIDRVKSEALLRLTQDLNARFSFAKTFMISAERGHGVEDLRKWLAEQVPEGPWLYPEDQ 182

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            +        ++  R      L+++
Sbjct: 183 IADLPMRMIAAEITREKLTLRLHQE 207


>gi|148642929|ref|YP_001273442.1| GTP1/OBG family GTPase [Methanobrevibacter smithii ATCC 35061]
 gi|148551946|gb|ABQ87074.1| GTPase, GTP1/OBG family [Methanobrevibacter smithii ATCC 35061]
          Length = 336

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 24/174 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           IVI G  N GKS+L N ++  D  I  + P TT+ +    ++     ++I DT G+ +  
Sbjct: 165 IVIAGFPNVGKSTLLNQISGADPQI-ANYPFTTKGIQIGHVERHWKSIQIIDTPGLLDRP 223

Query: 282 DIVEKEGIKRTFLEVEN-ADLILLLKEINS-------------KKEISFPKNIDFIFIGT 327
            +   +      + +E+ AD IL + + +              K+      NI  I++  
Sbjct: 224 VLEMNDIELNAIVALEHLADAILFIFDASETCGFGLESQYNLLKQIEKIFDNIPVIYLFN 283

Query: 328 KSDLY------STYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K DL         Y +E D    IS+  GEG+++ INK+   +    +      
Sbjct: 284 KMDLIEDTSYVEQYVDELDNSIFISAIEGEGIDK-INKVLDSVKKIERNEEEEY 336


>gi|90416441|ref|ZP_01224372.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2207]
 gi|90331640|gb|EAS46868.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2207]
          Length = 299

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 66/209 (31%), Gaps = 42/209 (20%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + I+G  N GKS+L N +  + + I +  P TTR  L     ++   V   DT GI    
Sbjct: 11  VAIVGRPNVGKSTLLNHILGQKLCITSRKPQTTRHTLLGIKTVDETQVIFVDTPGIHTNQ 70

Query: 282 DIVEKEGIKRTFLEV----------------ENADLILLLKEINSKKEISFPKNIDFIFI 325
           +      + R+   V                  AD          +    +  N D   I
Sbjct: 71  ERAINRVMNRSAASVIADVDVVIFVVDRFEWSEAD----------EYVAKYIANYDVPVI 120

Query: 326 --GTKSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKL 369
               K DL     E   HL               S+      E+L  KI S +       
Sbjct: 121 IAINKVDLIEDKEELLPHLQFLSDKVKAADLIPLSALRKTNFEQLEEKISSFIPEAMHMF 180

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           P    + +   +  ++ VR   M  L  +
Sbjct: 181 PDDQITDRSERFLAAEMVREKIMRQLGAE 209


>gi|42524625|ref|NP_970005.1| GTPase [Bdellovibrio bacteriovorus HD100]
 gi|39576835|emb|CAE78064.1| GTPase [Bdellovibrio bacteriovorus HD100]
          Length = 487

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 79/210 (37%), Gaps = 20/210 (9%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDV 244
               +++ + I  LK +++S   +       R     + ++G++NAGKSSL  AL   DV
Sbjct: 215 ELDRRKIRDRIKELKQELASISQELDTRRARREQELTVALVGYTNAGKSSLMRALTGSDV 274

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
            I   +  T    + I        + +SDT G  +          K T  E  NA L+L 
Sbjct: 275 LIADKLFATLDTTVRILYPETKPKILVSDTVGFIKKLPHDLVASFKSTLDEAANASLLLY 334

Query: 305 LKEINS---KKEISF---------PKNIDFIFIGTKSDLYS-----TYTEEYD--HLISS 345
             + +    + ++            ++I    I  K D  S        +E+   H +S+
Sbjct: 335 TVDCSDPTFRSQLEVTRTVLAEVGAQDIPSKLIFNKRDRLSPEEEAELAKEFPEAHFMSA 394

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPS 375
              + +  L + +     N+  +    IP 
Sbjct: 395 KNADDVATLHSMLVKHFENEMVEEDVLIPY 424


>gi|325971939|ref|YP_004248130.1| GTP-binding proten HflX [Spirochaeta sp. Buddy]
 gi|324027177|gb|ADY13936.1| GTP-binding proten HflX [Spirochaeta sp. Buddy]
          Length = 440

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 89/226 (39%), Gaps = 30/226 (13%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLF 236
           E E       +++ + ++ LK  +   + Q  +    R   N     I+G++N+GKSSL 
Sbjct: 177 EGETQLELDRRQIQDRVVALKLLLEKVVQQRNIQRNQRMNGNIPTGAIVGYTNSGKSSLL 236

Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
           NAL    V +V D    T D  T  + L  G  + +SDT G          +  K T  E
Sbjct: 237 NALTNAGV-LVEDKLFATLDPTTRLVKLPGGEEILLSDTVGFISDLPHNLVDAFKSTLEE 295

Query: 296 VENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSD----------LYS 333
            + AD ++++ + +    ++               +   I +  K D          L S
Sbjct: 296 AKYADFLIIVCDASHPDMLANYATTVQVLEELGCTDKPAIVLANKMDKVEDAFAVSRLKS 355

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
            Y    +   S  TGEGL+ L+ +I   L        + +P + RH
Sbjct: 356 MYNPVLE--TSIKTGEGLDALLTQIGITLHELCATTTYLLP-NTRH 398


>gi|238784188|ref|ZP_04628201.1| GTP-binding protein era [Yersinia bercovieri ATCC 43970]
 gi|238714897|gb|EEQ06896.1| GTP-binding protein era [Yersinia bercovieri ATCC 43970]
          Length = 284

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGI 289
           GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E    + +   
Sbjct: 2   GKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEEKRAINRLMN 61

Query: 290 KRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL 342
           +     + + +L++ + E     +  E+   K    +   +    K D  +  ++   H+
Sbjct: 62  RAASSSLGDVELVIFVVEGTNWTADDEMVVNKLRSLDCPVLLAINKVDNVTDKSKLLPHI 121

Query: 343 I--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
                          S+  G  ++ +   ++ ++       P    + +   +  S+ +R
Sbjct: 122 QFLSKQMNFLDVVPISAEKGMNVDTIAGIVRKLMPEAEHHFPEDYITDRSQRFMASEIIR 181

Query: 389 YLEMASLNEK 398
              M  L E+
Sbjct: 182 EKLMRFLGEE 191


>gi|213510936|ref|NP_001133888.1| noggin-1 [Salmo salar]
 gi|209155700|gb|ACI34082.1| Nucleolar GTP-binding protein 1 [Salmo salar]
          Length = 636

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 69/183 (37%), Gaps = 23/183 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           +  +     L     +  H+   +L  I  N   +++ G+ N GKSS  N + + DV  V
Sbjct: 139 TIMKRQKQSLEYLEQVRQHL--SRLPTIDPNTRTLLLCGYPNVGKSSFINKVTRADV-EV 195

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL---ILL 304
                TT+ +    +D +    ++ DT GI +           +    +  A L   +L 
Sbjct: 196 QPYAFTTKSLFVGHMDYKYLRWQVVDTPGILDHPLEERNTIEMQAITAL--AHLRSAVLY 253

Query: 305 LKEINSKKEISFPK-------------NIDFIFIGTKSDL--YSTYTEEYDHLISSFTGE 349
           + +++ +   +  +             N   + +  K D+   S  TEE   + +  T E
Sbjct: 254 VMDVSEQCGQTLEQQLELFNNIRPLFANKPLLIVANKCDVKKISELTEEDQKIFADLTAE 313

Query: 350 GLE 352
           G+ 
Sbjct: 314 GIS 316


>gi|171185382|ref|YP_001794301.1| small GTP-binding protein [Thermoproteus neutrophilus V24Sta]
 gi|170934594|gb|ACB39855.1| small GTP-binding protein [Thermoproteus neutrophilus V24Sta]
          Length = 351

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 48/234 (20%)

Query: 129 ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS 188
           E++A + ++  +     +     G +  L      +L  +R                   
Sbjct: 118 EAIAAVRTAPDKGAIHAARRMYRGRVVDLLNDLRPELDKLR------------------- 158

Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
                        ++ + +   +L  +  N + IV+ G  N GKSS            V 
Sbjct: 159 -------------EVVAFLR--RLPAVDPNLFTIVVAGAPNVGKSSFV-RCVSSARPEVA 202

Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN-ADLILLLKE 307
           D P TT+ +    + + G +V++ DT G+ +          ++  L + + A  I+ L +
Sbjct: 203 DYPFTTKQIHVGHIRIRGDVVQVVDTPGLLDRPLSERNAIERQAVLALRHLAGAIVFLVD 262

Query: 308 ------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349
                       +N  +EIS       + +  K D+ S    E    + S  GE
Sbjct: 263 PTPHSGFPLEMQLNLYREISASFQAPLVAVVNKVDIASPAELERARDLFSPIGE 316


>gi|315297595|gb|EFU56872.1| conserved hypothetical protein [Escherichia coli MS 16-3]
          Length = 246

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 28/222 (12%)

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EK 286
           S AGKSSL NAL + ++  V+D+   TR+V    L+  G+ + I+D  G+ E+ D   E 
Sbjct: 1   SGAGKSSLCNALFQGEITPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRDRDAEY 60

Query: 287 EGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTE 337
           E + R    +   DL+L L + + +         + I    +   +F+  ++D  +    
Sbjct: 61  EALYRDI--LPELDLVLWLIKADDRALSVDEYFWRHILHRGHQRVLFVVMQAD-KTEPCH 117

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
           E+D      +    + +  K    +   F+ +   +    R  + L   V  L  A  + 
Sbjct: 118 EWDMAGIQPSPAQAQNIREK-TEAVFRLFRPVHRVVAVSARTGWELDTLVSALMTALPDH 176

Query: 398 KDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIF 433
               L      ++  E++R  +    + TG V      D IF
Sbjct: 177 AASPLMTRLQDELRTESVRSQARE--QFTGAV------DRIF 210


>gi|297851576|ref|XP_002893669.1| GTP-binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297339511|gb|EFH69928.1| GTP-binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 435

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 87/255 (34%), Gaps = 44/255 (17%)

Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238
            ++ED  + S       +          + +G++ E  +    + I+G  NAGKSSL N 
Sbjct: 111 DDDEDNIDRSRILAKALLEAALESPDEELGEGEVREEDQKSLNVGIIGPPNAGKSSLTNF 170

Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET----DDIVEKEGIKRTFL 294
           +    VA  +    TT   +   L      V   DT G+            K  ++  + 
Sbjct: 171 MVGTKVAAASRKTNTTTHEVLGVLTKGDTQVCFFDTPGLMLKKSGYGYKDIKSRVQNAWT 230

Query: 295 EVENADLILLLKEI------NSKKEISFPK--------NIDFIFIGTKSDLYSTYTE--- 337
            V+  D+++++ ++         + +   K            I    K DL     +   
Sbjct: 231 SVDLFDVLIVMFDVHRHLMSPDSRVVRLIKYMGEEENPKQKRILCMNKVDLVEKKKDLLK 290

Query: 338 -----------EYDHLISSFTGEGLEELINKI-KSILSNKFKKLPFSI-----------P 374
                      E   +IS   G G+++L   +    +   +++  F++            
Sbjct: 291 VAEEFQDLPAYERYFMISGLKGSGVKDLSQYLMDQAVKKPWEEDAFTMSEEVLKNISLEV 350

Query: 375 SHKRHLYHLSQTVRY 389
             +R L H+ Q + Y
Sbjct: 351 VRERLLDHVHQEIPY 365


>gi|227874235|ref|ZP_03992434.1| GTP-binding protein [Oribacterium sinus F0268]
 gi|227839904|gb|EEJ50335.1| GTP-binding protein [Oribacterium sinus F0268]
          Length = 426

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 102/297 (34%), Gaps = 28/297 (9%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL-DFSEEEDVQNFSSKEVLN 194
            + ++  +          +        + L+       A L +    E       +++  
Sbjct: 115 RARSKEAKMQVQYATLQYMLPRLVGLRENLSRQGGSGGAGLSNRGAGEKKIELDKRKIQE 174

Query: 195 DILFLKNDISS--HISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALA------KKDVA 245
           ++ FL+ +      + + K  +  ++   +I ++G++NAGKSSL NA+       +K+  
Sbjct: 175 EMAFLRRECKKQEEVRRVKRQKREKSNIPRIALVGYTNAGKSSLMNAILDWSKEGQKEKV 234

Query: 246 IVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
              D+   T D     +  E G     +DT G          +    T  E   ADLIL 
Sbjct: 235 EEKDMLFATLDTTIRHVKGERGEEFLFADTVGFIRDLPPKLLDAFHSTLEEAIEADLILQ 294

Query: 305 LKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEEYDH-----LISSFT 347
           + + +                     +I  +++  K D     +E          IS   
Sbjct: 295 VVDYSDPNYQKHMDSTLATLKKLEASHIPMLYVMNKCDKVLPLSELPKKRGEKLYISVKE 354

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
           G G+ EL+  +    S   + L   +P  +    +  +    +   S  E+   +++
Sbjct: 355 GIGISELMEAVSEKASANLRPLSILLPYSEAAWENSIRKEGKILSLSYEEEGIQMEL 411


>gi|168216171|ref|ZP_02641796.1| ferrous iron transport protein B [Clostridium perfringens NCTC
           8239]
 gi|182381698|gb|EDT79177.1| ferrous iron transport protein B [Clostridium perfringens NCTC
           8239]
          Length = 707

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 19/172 (11%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           S +S+ K+    +  Y + + G+ N GKS++FNAL   +     + PG T        + 
Sbjct: 11  SLLSKDKVRGNAKEDYVVALAGNPNVGKSTVFNALTGLNQ-HTGNWPGKTVAKAEGYYEF 69

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------EI 314
           +   +KI D  G        E+E I R ++   + D+++++ +  S +          EI
Sbjct: 70  KDSTIKIVDLPGTYSLLSNSEEEEIARDYICFNDPDIVVVVADATSLERNLNLFIQISEI 129

Query: 315 SFPKNIDFIF--------IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           +    +            I    DL S          S+  G G+EEL   I
Sbjct: 130 TEKAILCVNLTDEAEKNNIKIDLDLLSKELNANLVSSSARNGVGIEELKEAI 181


>gi|157115815|ref|XP_001658295.1| Putative GTP-binding protein 5 [Aedes aegypti]
 gi|108883465|gb|EAT47690.1| Putative GTP-binding protein 5 [Aedes aegypti]
          Length = 383

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 26/168 (15%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           +R+   +  +G  NAGKS+L  A+++     V   P TT       +  + Y  + ++D 
Sbjct: 201 LRSMAHVGFIGLPNAGKSTLLRAISRA-RPKVASYPFTTLKPHLGMVQYDDYEQIAVADL 259

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------EISF----PKNI 320
            G+       +  GI +     E  +++L + +++S++          E++       + 
Sbjct: 260 PGLIPDSHKNKGLGI-QFLKHAERCNVLLFVVDVSSEEPWNHYQTLMHELTMFSEELADR 318

Query: 321 DFIFIGTKSDLYST---------YTEEYDHLISSFTGEGLEELINKIK 359
             + I  K DL            + +     IS+  G  + EL+ +I+
Sbjct: 319 PKMIIANKIDLPEAEKNLELLQHHVDVPVIPISAKLGTNVSELLKEIR 366


>gi|125718243|ref|YP_001035376.1| HflX GTPase [Streptococcus sanguinis SK36]
 gi|125498160|gb|ABN44826.1| HflX GTPase, putative [Streptococcus sanguinis SK36]
          Length = 412

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 25/235 (10%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKAVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNCLTSKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T +++L G L V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKNINLSGQLNVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPHHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKI 358
            K            +I  + +  K+D    +T     + + S   +    L+ ++
Sbjct: 296 EKTVLDIMKELDMLDIPRLTLYNKADKAEDFTPTLTPYSLISAKADNSRALLQQV 350


>gi|332375296|gb|AEE62789.1| unknown [Dendroctonus ponderosae]
          Length = 357

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 15/137 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277
            K+ I+G  N+GKS++ N L  +     +    TTR      + L    +   DT G+  
Sbjct: 46  LKVGIMGVPNSGKSTIINHLMDRKACPTSSKVHTTRSAAMAIITLGDTQIVFLDTPGLIN 105

Query: 278 -RETDDIVEKEGIKR-TFLEVENADLILLLKEIN-----SKKEISFP------KNIDFIF 324
             E      +    + +   +  AD++ ++ +++      + +I         K+   I 
Sbjct: 106 ENEKKRFNLENSFLKDSKRALREADIVGVIHDVSNSHTRDRLDIKIINLLESNKDKPSIL 165

Query: 325 IGTKSDLYSTYTEEYDH 341
           I  K D+  +  +  D 
Sbjct: 166 ILNKIDMLKSKRKLLDI 182


>gi|254424384|ref|ZP_05038102.1| GTP-binding proten HflX, putative [Synechococcus sp. PCC 7335]
 gi|196191873|gb|EDX86837.1| GTP-binding proten HflX, putative [Synechococcus sp. PCC 7335]
          Length = 588

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 81/210 (38%), Gaps = 24/210 (11%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           + +  + ++ +  +    N + +H ++ +      +   + I+G++NAGKS+L N L + 
Sbjct: 379 ETERRAIQKRITRLQAEVNQLQAHRTRLRQRRQANSVPSVAIIGYTNAGKSTLLNHLTES 438

Query: 243 DVA----IVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +V     +   +  TTR V+  D +      + ++DT G  +       +  + T  EV 
Sbjct: 439 EVYAADQLFATLDPTTRRVVINDEETHELQSLVLTDTVGFIQDLPPALMDAFRATLEEVT 498

Query: 298 NADLILLLKEINSKKEISFPKNI------------DFIFIGTK-----SDLYSTYTEEYD 340
            AD ++ + + +         ++              + +  K     +D      +EY 
Sbjct: 499 EADALIHVVDASHHAWKDHIHSVMKLLGQMPIAPGPILLVFNKLDQTDTDALEVAKDEYP 558

Query: 341 H--LISSFTGEGLEELINKIKSILSNKFKK 368
               +S     G++ L  KI  ++      
Sbjct: 559 QAVFVSVAKNLGMDTLRQKILQLVHYAITH 588


>gi|49176249|ref|YP_026173.1| CP4-57 prophage; predicted GTP-binding protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89109431|ref|AP_003211.1| predicted GTP-binding protein [Escherichia coli str. K-12 substr.
           W3110]
 gi|170082232|ref|YP_001731552.1| CP4-57 prophage; GTP-binding protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|238901790|ref|YP_002927586.1| CP4-57 prophage; putative GTP-binding protein [Escherichia coli
           BW2952]
 gi|54042338|sp|P52131|YFJP_ECOLI RecName: Full=Uncharacterized protein yfjP
 gi|48994902|gb|AAT48146.1| CP4-57 prophage; predicted GTP-binding protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|85675495|dbj|BAE76767.1| predicted GTP-binding protein [Escherichia coli str. K12 substr.
           W3110]
 gi|169890067|gb|ACB03774.1| CP4-57 prophage; predicted GTP-binding protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|238860627|gb|ACR62625.1| CP4-57 prophage; predicted GTP-binding protein [Escherichia coli
           BW2952]
 gi|260448297|gb|ACX38719.1| GTP-binding protein HSR1-related protein [Escherichia coli DH1]
 gi|315137248|dbj|BAJ44407.1| CP4-57 prophage; putative GTP-binding protein [Escherichia coli
           DH1]
          Length = 287

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + AGKSSL NAL   +V+ V+D+   TRD L   L +  + + I D  G+ E+ 
Sbjct: 39  IGIMGKTGAGKSSLCNALFAGEVSPVSDVAACTRDPLRFRLQIGEHFMTIVDLPGVGESG 98

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
            + + E       ++   DLIL L + + +  ++  ++     IG
Sbjct: 99  -VRDTEYAALYREQLPRLDLILWLIKADDRA-LATDEHFYRQVIG 141


>gi|325142464|gb|EGC64868.1| GTP-binding proten HflX [Neisseria meningitidis 961-5945]
 gi|325198400|gb|ADY93856.1| GTP-binding proten HflX [Neisseria meningitidis G2136]
          Length = 392

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + + + I  LK  + +   Q  L    R         ++G++N GKSSLFN L K  +
Sbjct: 180 DRRLIAHRINALKKQLVNLKKQRALRRKPRESGTIKTFALVGYTNVGKSSLFNRLTKSGI 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 240 YAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDLPHKLISAFSATLEETAQADVLLH 299

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 300 VVDAAAPNSGQQIEDVENVLREIHAGDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 360 RISVAENTGIDALREAIAESCAAAPNTDETEMP 392


>gi|254166917|ref|ZP_04873771.1| ferrous iron transport protein B [Aciduliprofundum boonei T469]
 gi|289596111|ref|YP_003482807.1| ferrous iron transport protein B [Aciduliprofundum boonei T469]
 gi|197624527|gb|EDY37088.1| ferrous iron transport protein B [Aciduliprofundum boonei T469]
 gi|289533898|gb|ADD08245.1| ferrous iron transport protein B [Aciduliprofundum boonei T469]
          Length = 665

 Score = 63.7 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ N GKSSLFNA+      I  + PG T +     +  EG  + I D  G   
Sbjct: 1   MLIALAGNPNTGKSSLFNAITGAHQHI-GNWPGVTVEKKEGIITFEGKKITIVDLPGTYS 59

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
                 +E I R F+  E  D+++ + +  + +
Sbjct: 60  LTAYSLEEVITRNFILEEEPDVVVDVIDATNLE 92


>gi|325134193|gb|EGC56842.1| GTP-binding proten HflX [Neisseria meningitidis M13399]
 gi|325140241|gb|EGC62766.1| GTP-binding proten HflX [Neisseria meningitidis CU385]
 gi|325144384|gb|EGC66686.1| GTP-binding proten HflX [Neisseria meningitidis M01-240013]
 gi|325208206|gb|ADZ03658.1| GTP-binding proten HflX [Neisseria meningitidis NZ-05/33]
          Length = 392

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + + + I  LK  + +   Q  L    R         ++G++N GKSSLFN L K  +
Sbjct: 180 DRRLIAHRINALKKQLVNLKKQRALRRKPRESGTIKTFALVGYTNVGKSSLFNRLTKSGI 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 240 YAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDLPHKLISAFSATLEETAQADVLLH 299

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 300 VVDAAAPNSGQQIEDVENVLQEIHAGDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 360 RISVAENTGIDALREAIAESCAAAPNTDETEMP 392


>gi|268686755|ref|ZP_06153617.1| GTP-binding protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268627039|gb|EEZ59439.1| GTP-binding protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 392

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 72/213 (33%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDV 244
             +   + I  LK  +++   Q  L    R   +I    ++G++N GKSSLFN L K  +
Sbjct: 180 DRRLTAHRINALKKQLANLKKQRALRRKSRESGRIKTFALVGYTNVGKSSLFNRLTKSGI 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 240 YAKDQLFATLDTTARRLYISPACSIILTDTVGFVSDLPHKLISAFSATLEETVQADVLLH 299

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS+++I   +N         I  I +  K+DL  +  +               
Sbjct: 300 VVDAAARNSRQQIEDVENVLQEIHAHDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 360 RISVAENTGIDALREAIAEYCAAAPNTDETEMP 392


>gi|261416127|ref|YP_003249810.1| small GTP-binding protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372583|gb|ACX75328.1| small GTP-binding protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326650|gb|ADL25851.1| putative ferrous iron transport protein B [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 676

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 14/141 (9%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I +LG  N+GKS+LFNAL       V + PG T +           L ++ D  G     
Sbjct: 4   IALLGQPNSGKSTLFNALTGSHQ-HVGNWPGKTVERAEGFFTQGEELYRVVDLPGSYGLT 62

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTY 335
               +E + RT++E   AD++ ++ + +  +   +            + +    D+    
Sbjct: 63  ANSAEEVVTRTYIEHGYADIVCIIVDASQLERSLYMLADFAGIERPVMLVLNMMDVAEQK 122

Query: 336 TEEYDHLISSFTGEGLEELIN 356
            ++ D        + +E+L+N
Sbjct: 123 GKKIDV-------QKIEKLLN 136


>gi|292493695|ref|YP_003529134.1| GTP-binding proten HflX [Nitrosococcus halophilus Nc4]
 gi|291582290|gb|ADE16747.1| GTP-binding proten HflX [Nitrosococcus halophilus Nc4]
          Length = 383

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 83/259 (32%), Gaps = 29/259 (11%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W   L   +  I        + +         +  +      +   
Sbjct: 132 LAQLQHLSTRLVRGWSH-LERQKGGIGLRGPGETQLETDRRLIGNRIRQLHKRLGRVRKQ 190

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
             Q +          I ++G++NAGKS+LFN L    V +       T D     L L  
Sbjct: 191 RHQSRRSRHKAQVPTISLVGYTNAGKSTLFNRLTTAQV-LADSRLFATLDPTLRRLRLAM 249

Query: 267 -YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF- 324
              + ++DT G          E  + T  E  +A L+L + + +S++       ++ +  
Sbjct: 250 VRPLVLADTVGFIRNLPHDLVEAFRSTLEETRDAALLLHVVDASSEERQVLIAQVNRVLQ 309

Query: 325 -----------IGTKSDLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSN 364
                      I  K D         +           +S+ +GEG+E L   +      
Sbjct: 310 TIGAEEVPQLEIYNKIDQIENCQPRLERDASGRICRVWLSAASGEGIELLRQALAEYFPA 369

Query: 365 KFKKLPFSIPSHKRHLYHL 383
           K      ++ + ++ +   
Sbjct: 370 K-----ETVVNSQQAIRAC 383


>gi|254829947|ref|ZP_05234602.1| hypothetical protein Lmon1_01260 [Listeria monocytogenes 10403S]
          Length = 407

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 117/336 (34%), Gaps = 54/336 (16%)

Query: 82  EFHVHGGIA---VVNGILEELAKMPNLRLANPGEFSRRAFE-----------NGKIDLLE 127
           E H     A   V++ ++++L ++        G+    A             N ++   +
Sbjct: 27  ELHSLAKTANAEVMDELIQKLERVNQASFIGSGKLDELAALVEMHEADVVIFNSELSATQ 86

Query: 128 AESLADLISSE--TEMQRRL---SM--EGMSGELSSLYGQWIDKL-------THIRSFIE 173
             +++  + +      Q  L   +M  +   G+L   Y Q+   L         +     
Sbjct: 87  VRNISAAVEARIIDRTQLILDIFAMCAKSREGKLQVAYAQYKYLLPRLSGQGISLSKLGG 146

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG----YKIVILGHSN 229
                   E       + +   +  +K  + +H+ Q +   I R      ++  ++G++N
Sbjct: 147 GIGSRGPGESKLEMDKRHIREKMHDIKAQL-THVEQHRKRIIERRNTQSVFRFGLIGYTN 205

Query: 230 AGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           AGKS++FN L  +    +  +   +  TTR V        G+   ++DT G  +      
Sbjct: 206 AGKSTIFNRLTNETTLQENKLFATLDPTTRKVRF----SGGFQALLTDTVGFIQDLPTTL 261

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYS 333
               + T  E  N D+++ + + ++   +                ++  + I  K D ++
Sbjct: 262 IAAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMD-HA 320

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             T   D   S       +E  + IK  +    +K 
Sbjct: 321 PATFVPDQPESLLISALDQEAPDTIKQRMIQLIEKN 356


>gi|156937836|ref|YP_001435632.1| small GTP-binding protein [Ignicoccus hospitalis KIN4/I]
 gi|156566820|gb|ABU82225.1| small GTP-binding protein [Ignicoccus hospitalis KIN4/I]
          Length = 341

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 83/230 (36%), Gaps = 21/230 (9%)

Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201
           Q+  +       L  L  +  +     R+ + A +   E    +  +    L+ +   + 
Sbjct: 87  QKYWAAAS---GLKRLREKLKEMWEDYRALVRAAVSLEEAARFRREAVGRALSMVRRSRG 143

Query: 202 DISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
            +S+          L  +     +IV+ G  ++GKSS   A++  +V  V   P TT+ V
Sbjct: 144 ALSTIREFKYAVASLPSVDFEEPRIVVAGMPSSGKSSFVKAVSTAEV-EVASYPFTTKQV 202

Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN-ADLILLLKEINSK----- 311
                +  G   ++ DT GI +       E  ++  + + +  +++L L +++ +     
Sbjct: 203 HLGHFERGGRRFQVVDTPGILDRPWDSLNEIERKAVIAIRHLPNVLLFLYDVSEEGYGVE 262

Query: 312 -------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354
                    I+       +    K D+ +    E     +S  G    +L
Sbjct: 263 EQTEVLDNVINVVGKEKVVVALNKIDVANERKVELAEEEASRRGLRTFKL 312


>gi|134094497|ref|YP_001099572.1| GTPase [Herminiimonas arsenicoxydans]
          Length = 338

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 72/200 (36%), Gaps = 25/200 (12%)

Query: 197 LFLKNDISSHISQ---GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             L+  +     Q    +      N + + ++G++NAGKS+LFNALAK    +  D    
Sbjct: 130 KALRAKLEKLHKQHITQRRARGRNNAFSVSLVGYTNAGKSTLFNALAKT-KMLAADQLFA 188

Query: 254 TRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  +  + L     V ISDT G             + T  E  +ADL+L + +  S  
Sbjct: 189 TLDTTSRRIYLGEAGNVVISDTVGFIRELPHQLVAAFRATLEETIHADLLLHVVDGASPA 248

Query: 313 EISFPK------------NIDFIFIGTKSDLY--------STYTEEYDHLISSFTGEGLE 352
            +   +             I  I +  K D            Y +     IS+ TG GL+
Sbjct: 249 RMEQIEEVNAVLREIGADQIPQILVWNKIDAAGLEPALERDEYDKIRRVFISAQTGSGLD 308

Query: 353 ELINKIKSILSNKFKKLPFS 372
            L   I      +   L   
Sbjct: 309 LLREAIAECAKERAAGLEDV 328


>gi|289648626|ref|ZP_06479969.1| GTP-binding protein HflX [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 433

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 91/253 (35%), Gaps = 25/253 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN++   DV    D    T
Sbjct: 174 QIKGRLEKVRSQRDQARRGRRRADIPSVSLVGYTNAGKSTLFNSVTDSDV-FAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L+    + ++DT G          E  + T  E  N+DL+L + + +    
Sbjct: 233 LDPTLRRLQLDDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDSHEPDR 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +S              + +  + +  K DL      +             +S+  G GL+
Sbjct: 293 MSQIEQVMAVLGEIGAEGLPILEVYNKLDLLEGVEPQIQRDADGKPQRVWVSARDGRGLD 352

Query: 353 ELINKIKSILSNK 365
            L   I  +L + 
Sbjct: 353 LLKQAIAELLGDD 365


>gi|225012019|ref|ZP_03702456.1| GTP-binding proten HflX [Flavobacteria bacterium MS024-2A]
 gi|225003574|gb|EEG41547.1| GTP-binding proten HflX [Flavobacteria bacterium MS024-2A]
          Length = 402

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 24/164 (14%)

Query: 188 SSKEVLNDILFLKNDISSHISQ-----GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
             + V + I  LK  + +   Q     G  G ++R    + ++G++N GKS+L N +AK 
Sbjct: 167 DRRIVRDKISLLKKKLINIDKQMATQRGNRGALVR----VALVGYTNVGKSTLMNVVAKS 222

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V    +    T D     + +      +SDT G          E  K T  EV+ ADL+
Sbjct: 223 NV-FAENKLFATLDTTVRKVVIGNLPFLMSDTVGFIRKLPTQLVESFKSTLDEVQEADLL 281

Query: 303 LLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYS 333
           L + +I+               KEI        + +  K D+Y 
Sbjct: 282 LHVVDISHPNFEDHIDSVNQILKEIKSLDKPTLM-VFNKIDVYQ 324


>gi|167044802|gb|ABZ09470.1| putative ADP-ribosylation factor family protein [uncultured marine
           crenarchaeote HF4000_APKG8D6]
          Length = 369

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 83/216 (38%), Gaps = 32/216 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRN--GYK-IVILGHSNAGKSSLFNALAKK 242
           +    E+   ++ +K+ +     Q KL    R   G+K I + G+++AGK++LFNAL  +
Sbjct: 147 DVYYNEIKKRMINIKSKLVKSGKQRKLHRQARKRLGFKTISLAGYTSAGKTTLFNALTGE 206

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
                 D   TT       + +   +  ISDT G          E  K T  E+  AD++
Sbjct: 207 QREE-NDELFTTLSTTVRRVMINQEVALISDTIGFISRLPAYMIEAFKSTLEELLYADVV 265

Query: 303 LLLKEINSK---------------KEISFPKNIDFIFIGTKSDLYST------------Y 335
           +++ + +                  EI    N   +F   KS+L                
Sbjct: 266 IVVIDASDNLYELQKKFKSCHTTLNEIGVESN-KLVFALNKSELLDDDRILDIVDWLELK 324

Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
             +    IS+ TG+ +++L   I +I  N   +   
Sbjct: 325 ENKKWIDISAVTGKNVDKLKKTIDNIFQNYISENSD 360


>gi|158335137|ref|YP_001516309.1| GTP binding domain-containing protein [Acaryochloris marina
           MBIC11017]
 gi|158305378|gb|ABW26995.1| GTP binding domain protein [Acaryochloris marina MBIC11017]
          Length = 631

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 75/213 (35%), Gaps = 19/213 (8%)

Query: 101 KMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQ 160
             P  R A       R   N          +A L  + T+  R  + + +   L  +  +
Sbjct: 184 LEPAARTAVKVWQWSRWIFNP---------VAALTRTSTQTYRNQANQQLLANLGQIVRE 234

Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220
               L  +     A         +++   K    +   L+  I+          + +   
Sbjct: 235 --TTLQALGERAIALYSGEAVRSLESLEPKLPEAETQTLQAIIT---EAAPAKAVEQAPL 289

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT-TRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++++G + AGKSSL N L  ++ A V  +P T T        +L+   + + D+ G  +
Sbjct: 290 NVLLVGRTGAGKSSLVNTLFGRETAAVDVLPSTDTLQSYRFKNNLD-ETLTLWDSPGYEQ 348

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           +     ++ +     +   ADL+LL+       
Sbjct: 349 SGRDDLRQAV---IEKAAEADLLLLVTPATDPA 378


>gi|254805051|ref|YP_003083272.1| putative GTP-binding protein [Neisseria meningitidis alpha14]
 gi|254668593|emb|CBA06132.1| putative GTP-binding protein [Neisseria meningitidis alpha14]
          Length = 392

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + + + I  LK  + +   Q  L    R         ++G++N GKSSLFN L K  +
Sbjct: 180 DRRLIAHRINALKKQLVNLKKQRALRRKPRESGTIKTFALVGYTNVGKSSLFNRLTKSGI 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 240 YAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDLPHKLISAFSATLEETAQADVLLH 299

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 300 VVDAAAPNSGQQIEDVENVLREIHAGDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 360 RISVAENTGIDALREAIAESCAAAPNTDETEMP 392


>gi|323141020|ref|ZP_08075926.1| GTP-binding protein HflX [Phascolarctobacterium sp. YIT 12067]
 gi|322414468|gb|EFY05281.1| GTP-binding protein HflX [Phascolarctobacterium sp. YIT 12067]
          Length = 610

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 91/259 (35%), Gaps = 25/259 (9%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           E ++Q  L+    +             L+ +   I        + +V     ++ +  I 
Sbjct: 307 EGKLQVELAQLQYT---LPRIMGKGLALSRLGGGIGTRGPGETKLEVDRRRIRDRIAYIK 363

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                + S  +  + G    +   + ++G++NAGKS+L N L   D+    D    T D 
Sbjct: 364 ECIGKVKSVRTLHRAGRAKASVPTVSLVGYTNAGKSTLLNTLTNSDI-YAQDQLFATLDP 422

Query: 258 LTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----- 311
            T  LDL       ++DT G  +          + T  EV  +D++L + +++ +     
Sbjct: 423 TTRQLDLPNKQQAILTDTVGFIQRLPHQLVAAFQSTLEEVVQSDVLLHVIDVSHELYKEQ 482

Query: 312 -------KEISFPKNIDFIFIGTKSDLYST--------YTEEYDHLISSFTGEGLEELIN 356
                   +    K+   I +  K D              EE    IS+     L+ L+ 
Sbjct: 483 AAAVYQVLDELGAKDKTIITVYNKIDKLPPDSGLAERLSKEENSICISAKARYNLDGLLA 542

Query: 357 KIKSILSNKFKKLPFSIPS 375
            I   L  K  +  F +P 
Sbjct: 543 LIAENLKLKAVEESFLVPY 561


>gi|17231354|ref|NP_487902.1| GTP-binding protein [Nostoc sp. PCC 7120]
 gi|17132996|dbj|BAB75561.1| GTP-binding protein [Nostoc sp. PCC 7120]
          Length = 528

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           + +  + ++ ++ +    + + +H S+ +     R    + ++G++NAGKS+L NAL   
Sbjct: 318 ETERRAIQKRISRLQQEVDQLQAHRSRLRQRRQHREVPSVALVGYTNAGKSTLLNALTNA 377

Query: 243 DVA----IVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +V     +   +  TTR ++    +      + I+DT G          +  + T  EV 
Sbjct: 378 EVYTADQLFATLDPTTRRLVIPHAETGEPQGILITDTVGFIHELPASLMDAFRATLEEVT 437

Query: 298 NADLILLLKEINSKKEISFPK 318
            AD +L L +++    +S  +
Sbjct: 438 EADALLHLVDLSHPAWLSHIR 458


>gi|145220518|ref|YP_001131227.1| ferrous iron transport protein B [Prosthecochloris vibrioformis DSM
           265]
 gi|145206682|gb|ABP37725.1| ferrous iron transport protein B [Chlorobium phaeovibrioides DSM
           265]
          Length = 709

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + + G+ N GKSSLFNAL       V + PG T +      D  GY +++ D  G   
Sbjct: 4   LTVALAGNPNCGKSSLFNALTGAHQK-VGNFPGVTIEKYEGHCDFGGYRIRVVDLPGTYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------DFIFIGTKSDLYS 333
                 +E + R +L  E  D+++ + E  + +              DF+      D   
Sbjct: 63  LTPYSPEEIVTRQYLIEERPDVVVNVIEGPNLERSLLLTTQLMEMEVDFLVALNMMDEVE 122

Query: 334 T------------YTEEYDHLISSFTGEGLEELINKIKSI 361
                            +    S+    G++ L+N I  +
Sbjct: 123 EQGISIETKQLQQLLGCHIVPTSAKKMTGIDALLNHIVRV 162


>gi|254671386|emb|CBA08851.1| GTP-binding protein HflX [Neisseria meningitidis alpha153]
 gi|325206132|gb|ADZ01585.1| GTP-binding proten HflX [Neisseria meningitidis M04-240196]
          Length = 392

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + + + I  LK  +++   Q  L    R         ++G++N GKSSLFN L K  +
Sbjct: 180 DRRLIAHRINALKKQLANLKKQRALRRKSRESGTIKTFALVGYTNVGKSSLFNRLTKSGI 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 240 YAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDLPHKLISAFSATLEETAQADVLLH 299

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K DL  +  +               
Sbjct: 300 VVDAAASNSGQQIEDVENVLQEIHAGDIPCIKVYNKIDLLPSEEQNTGIWRDAAGKIAAV 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 360 RISVAENTGIDALREAIAEYCATAPNTDETEMP 392


>gi|227115179|ref|ZP_03828835.1| putative GTPase HflX [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 426

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 30/280 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIM 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+   +  +   + ++G++NAGKS+LFN +    V     +  T 
Sbjct: 173 QILSRLERVEKQREQGRRSRVRADVPTVSLVGYTNAGKSTLFNTITSAGVYAADQLFATL 232

Query: 255 RDVL-TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
              L  I +D  G  V ++DT G             K T  E   A L+L + +    + 
Sbjct: 233 DPTLRRIQVDDVGDTV-LADTVGFIRQLPHDLVAAFKATLQETRQASLLLHVVDAADPRL 291

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                       EI     I  + +  K D+   +    D           +S+ TG+G+
Sbjct: 292 DENIEAVDDVLAEIE-ADEIPALLVMNKIDMLDDFVPRIDRNEENLPVRVWLSAQTGDGI 350

Query: 352 EELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
             L   +   LS +  +    +P      R  ++  Q + 
Sbjct: 351 PLLFQALTERLSGEIAQHTLHLPPQAGRLRSRFYQLQAIE 390


>gi|95930849|ref|ZP_01313580.1| ferrous iron transport protein B [Desulfuromonas acetoxidans DSM
           684]
 gi|95133091|gb|EAT14759.1| ferrous iron transport protein B [Desulfuromonas acetoxidans DSM
           684]
          Length = 720

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 20/191 (10%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I + G+ N+GK++LFNA+       V + PG T +     L+L    V I D  G     
Sbjct: 7   IALAGNPNSGKTTLFNAITGA-RQHVGNYPGITVERKEGSLNLNDTRVNIVDLPGCYSLS 65

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTKS 329
              ++E + R  L  E  D+++ + +    +             I     ++ +    K 
Sbjct: 66  AFSQEELVARKVLVDERPDIVVDIVDATKLERHLYLAIQFFELGIPVMLTLNMMDEANKK 125

Query: 330 DL------YSTYTEEYDHLISSFTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYH 382
            L       ST  +       + +GEG +EL+ K +           P  I         
Sbjct: 126 GLRIDTEKLSTLLKCPVVETVARSGEGKQELLEKALHYAADRGGVWEPLEISYGADLDTA 185

Query: 383 LSQTVRYLEMA 393
           L+  V  +E A
Sbjct: 186 LNAMVEKIEAA 196


>gi|162448660|ref|YP_001611027.1| putative GTP-binding protein [Sorangium cellulosum 'So ce 56']
 gi|161159242|emb|CAN90547.1| putative GTP-binding protein [Sorangium cellulosum 'So ce 56']
          Length = 622

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 21/167 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280
           + I+G++NAGKS+L N L   DV +  +    T D  +  L   E   V I+DT G    
Sbjct: 404 VSIVGYTNAGKSTLLNTLTGADV-LAENKLFATLDTRSRRLRFPEEREVVITDTVGFIRE 462

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTK 328
                    + TF E  +ADL+L + + +        +             I  I +  K
Sbjct: 463 LPKDLFAAFRATFEEAADADLLLHVVDASDPARDQHIETTEALLTELDLIGIPRIVVFNK 522

Query: 329 SDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKK 368
           +DL +               ++S+   E   EL+ K+   L +++++
Sbjct: 523 ADLIAPAEGRRLLLGHPDAVVLSATDRETTRELLAKLAERLKSRWEE 569


>gi|18976769|ref|NP_578126.1| GTP-binding protein [Pyrococcus furiosus DSM 3638]
 gi|18892360|gb|AAL80521.1| GTP-binding protein homologue [Pyrococcus furiosus DSM 3638]
          Length = 186

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 38/177 (21%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT---IDLDLEGY--------- 267
            K+ I+G  N GKS+L NAL    ++ V+++PGTT+  +      + L            
Sbjct: 2   IKVAIIGAENVGKSTLMNALLGGKISEVSEVPGTTKGTIKRAFGKIKLPKTIKNPFGGAD 61

Query: 268 LVKISDTAGIRETDDIV-----EKEGIKRTFLEVENADLILLLKEINSKKE--------- 313
            + + DTAG+ + +  +      +E  K    E+  AD+I+ + +               
Sbjct: 62  ELVLIDTAGLFDPEKEIRGKVLSEEAFKELINEIIRADIIIHMIDATKGLHRGMEKLHYI 121

Query: 314 ISFPKNIDFIFIGTKSDL------------YSTYTEEYDHLISSFTGEGLEELINKI 358
           + F      I +  K DL                 E+   L+S  T EG  +L+  +
Sbjct: 122 LKFRYEKPIIVVINKIDLVPREKVEELAKIVEKRLEQKPILLSLVTYEGFNDLLKAL 178


>gi|332362077|gb|EGJ39879.1| GTP-binding protein HflX [Streptococcus sanguinis SK49]
          Length = 412

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 25/235 (10%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKAVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNCLTSKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T +++L G L V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKNINLSGQLNVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPHHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKI 358
            K            +I  + +  K+D    +T     + + S   +    L+ ++
Sbjct: 296 EKTVLDIMKELDMLDIPRLTLYNKADKAEDFTPTLTPYSLISAKADNSRALLQQV 350


>gi|323351342|ref|ZP_08086998.1| GTP-binding protein HflX [Streptococcus sanguinis VMC66]
 gi|322122566|gb|EFX94277.1| GTP-binding protein HflX [Streptococcus sanguinis VMC66]
          Length = 412

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 25/235 (10%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKAVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNCLTSKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T +++L G L V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKNINLSGQLNVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPHHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKI 358
            K            +I  + +  K+D    +T     + + S   +    L+ ++
Sbjct: 296 EKTVLDIMKELDMLDIPRLTLYNKADKAEDFTPTLTPYSLISAKADNSRALLQQV 350


>gi|262045395|ref|ZP_06018419.1| GTP-binding protein HflX [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037313|gb|EEW38560.1| GTP-binding protein HflX [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 426

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 94/279 (33%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIM 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+      +   + ++G++NAGKS+LFN +   +V    +    T
Sbjct: 173 QILSRLEKVEKQREQGRRSRAKADIPTVSLVGYTNAGKSTLFNQITAAEV-YAANQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVPDVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+         I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIDAVNTVLAEIEADEIPALLVMNKIDMLDDFEPRIDRDDENKPIRVWLSAQTGVGVP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            L   +   LS +  +    +P      R  ++  Q + 
Sbjct: 352 LLFQALTERLSGEVAQHTLRLPPKEGRLRSRFYQLQAIE 390


>gi|168187418|ref|ZP_02622053.1| GTP-binding protein [Clostridium botulinum C str. Eklund]
 gi|169294718|gb|EDS76851.1| GTP-binding protein [Clostridium botulinum C str. Eklund]
          Length = 598

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 103/272 (37%), Gaps = 33/272 (12%)

Query: 136 SSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            ++++  +    +  +   L  L G     L+   + I       ++ ++     +E + 
Sbjct: 280 RAKSKEAKIQVELAQLKYRLPRLIG-MGAVLSRTGAGIGTRGPGEKKLEIDKRHIRERVY 338

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK---------KDVA 245
           D+    + I  +    +      N  KI ++G++NAGKS+L N L           K+  
Sbjct: 339 DLNKELSKIKKNRQIQREKRSRDNVPKISLVGYTNAGKSTLRNKLCDIASPRDVVDKETV 398

Query: 246 IVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
              D+   T DV T  L L    LV ++DT G          E  K T  EV N+DL+L 
Sbjct: 399 FEADMLFATLDVTTRALVLPDNRLVTLTDTVGFIRKLPHDLVEAFKSTLEEVVNSDLLLH 458

Query: 305 LKEINSKKEISFPK------------NIDFIFIGTKSD---------LYSTYTEEYDHLI 343
           + + +SK      +            +   I I  K D         L   +       I
Sbjct: 459 VVDSSSKDAYKQIEAVNLVLEELESIDKPMILILNKIDKADKEQLEGLEEKFNNLKVLEI 518

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
           S+     L+ L+N++   L N  KK+ F IP 
Sbjct: 519 SARDNLNLDTLLNEVCRALPNPLKKVEFLIPY 550


>gi|167761976|ref|ZP_02434103.1| hypothetical protein BACSTE_00321 [Bacteroides stercoris ATCC
           43183]
 gi|167700208|gb|EDS16787.1| hypothetical protein BACSTE_00321 [Bacteroides stercoris ATCC
           43183]
          Length = 823

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 24/198 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
                E  ++ + L  +    I+ GK     R    + ++G+ N GK+SLFN  +     
Sbjct: 83  QLDYHEGWSEDMRLDEEELKRIALGK-----RRTINVALVGNPNCGKTSLFNIASGSHE- 136

Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
            V +  G T D      D +GY  +I D  G         +E   R  +  E  D+I+ +
Sbjct: 137 HVGNYSGVTVDAKEGYFDFQGYHFRIVDLPGTYSLSAYSPEEIYVRHHIINETPDIIINV 196

Query: 306 KEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDH------------LISSFT 347
            + ++ +            N+  +      D         D+               S T
Sbjct: 197 VDSSNLERNLYLTTQLIDMNVRMVIALNMYDELEASGNTLDYVKLGQLFGVPMLPTISRT 256

Query: 348 GEGLEELINKIKSILSNK 365
           G+G+E+L + I  I    
Sbjct: 257 GKGIEQLFHIIIGIYEGG 274


>gi|152973043|ref|YP_001338189.1| putative GTPase HflX [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238892657|ref|YP_002917391.1| putative GTPase HflX [Klebsiella pneumoniae NTUH-K2044]
 gi|150957892|gb|ABR79922.1| GTP - binding subunit of protease specific for phage lambda cII
           repressor [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238544973|dbj|BAH61324.1| GTP - binding subunit of protease specific for phage lambda cII
           repressor [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 426

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 94/279 (33%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIM 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+      +   + ++G++NAGKS+LFN +   +V    +    T
Sbjct: 173 QILSRLEKVEKQREQGRRSRAKADIPTVSLVGYTNAGKSTLFNQITAAEV-YAANQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVPDVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+         I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIDAVNTVLAEIEADEIPALLVMNKIDMLDDFEPRIDRDDENKPIRVWLSAQTGVGVP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            L   +   LS +  +    +P      R  ++  Q + 
Sbjct: 352 LLFQALTERLSGEVAQHTLRLPPKEGRLRSRFYQLQAIE 390


>gi|325204250|gb|ADY99703.1| GTP-binding proten HflX [Neisseria meningitidis M01-240355]
          Length = 392

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + + + I  LK  +++   Q  L    R         ++G++N GKSSLFN L K  +
Sbjct: 180 DRRLIAHRINALKKQLANLKKQRALRRKSRESGTIKTFALVGYTNVGKSSLFNRLTKSGI 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 240 YAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDLPHKLISAFSATLEETAQADVLLH 299

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K DL  +  +               
Sbjct: 300 VVDAAAPNSGQQIEDVENVLREIHAGDIPCIKVYNKIDLLPSEEQNTGIWRDAAGKIAAV 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 360 RISVAENTGIDALREAIAEYCAAAPNTDETEMP 392


>gi|316984668|gb|EFV63632.1| GTP-binding proten HflX [Neisseria meningitidis H44/76]
 gi|325200276|gb|ADY95731.1| GTP-binding proten HflX [Neisseria meningitidis H44/76]
          Length = 392

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 70/213 (32%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + + + I  LK  +++   Q  L    R         ++G++N GKSSLFN L K  +
Sbjct: 180 DRRLIAHRINALKKQLANLKKQRALRRKSRESGTIKTFALVGYTNVGKSSLFNRLTKSGI 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 240 YAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDLPHKLISAFSATLEETAQADVLLH 299

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 300 VVDAAAPNSGQQIEDVENVLQEIHAGDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 360 RISVAENTGIDALREAIAESCAAAPNTDETEMP 392


>gi|168062875|ref|XP_001783402.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665100|gb|EDQ51796.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 312

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 38/230 (16%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256
               ++ S       + E  +   ++ ++G  NAGKS+L N L    V+ V+    TT  
Sbjct: 6   RAALDEASEEEEDFAVSEEDQRSLRVGVVGSPNAGKSTLTNHLVGSKVSAVSRKTNTTHK 65

Query: 257 VLTIDLDLEGYLVKISDTAGI-----RETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
                L      +   DT G+             +  ++  +   E  + +++L + +  
Sbjct: 66  EHMGILTKGDSQLIFFDTPGLTVDVRGHPLRTDNRNRVRSAWQTAELCEALIVLVDAH-- 123

Query: 312 KEISFPKNIDFIFIG----------------TKSDLYS------TYTEEYD--------H 341
           ++I  P       +                  K DL           EEY          
Sbjct: 124 RQIERPDKRVTRLVEKLGNEEVLSQKKILCFNKVDLVHPKRLLLPLAEEYGNYPAFNSTF 183

Query: 342 LISSFTGEGLEELIN-KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
           +IS+ TG+G++ L    +   +   +++ P + P        L    +++
Sbjct: 184 MISALTGDGVDALQQYLLDQAVPRPWEEEPEARPQRLARATALEIVRQHI 233


>gi|104162032|emb|CAJ75740.1| Fe2+ transport system protein B [uncultured Thermotogales
           bacterium]
          Length = 649

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 85/232 (36%), Gaps = 30/232 (12%)

Query: 214 EIIRNGY-----KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268
           E  R+G       I +LG+ N GK+S+FNAL      IV + PG T +     +    + 
Sbjct: 2   ENHRDGIESRKSTIALLGNPNVGKTSIFNALTGS-RQIVANWPGVTVEKRAGVMKHHNHT 60

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDF 322
           V + D  G          E I R FL  E   + +++ +  + +              D 
Sbjct: 61  VDVIDLPGTYTLGATSLDEKIARDFLVNEKPGVAMVIGDAVNLERSLYLLLQVLELRGDV 120

Query: 323 IFIGTKSDLYSTYTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLP 370
           +      D       E D               S+ TGEG+EEL N +     +      
Sbjct: 121 VLAVNAVDEARKAGFEIDRNELSKQLGIPVVVTSAVTGEGIEELKNTLVKSTKSGSHVHY 180

Query: 371 FSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITG 421
                 +  L  LS+ +R    +A ++E+   + ++  +       + KITG
Sbjct: 181 LFSDEVEAQLRDLSERIRGKPSLAGIDERWLSIKLLERD-----DEVQKITG 227


>gi|15678003|ref|NP_274075.1| GTP-binding protein [Neisseria meningitidis MC58]
 gi|66731916|gb|AAY52150.1| GTP-binding protein [Neisseria meningitidis MC58]
 gi|308389361|gb|ADO31681.1| GTP-binding protein [Neisseria meningitidis alpha710]
 gi|325130288|gb|EGC53055.1| GTP-binding proten HflX [Neisseria meningitidis OX99.30304]
 gi|325136249|gb|EGC58857.1| GTP-binding proten HflX [Neisseria meningitidis M0579]
 gi|325202041|gb|ADY97495.1| GTP-binding proten HflX [Neisseria meningitidis M01-240149]
          Length = 392

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 70/213 (32%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + + + I  LK  +++   Q  L    R         ++G++N GKSSLFN L K  +
Sbjct: 180 DRRLIAHRINALKKQLANLKKQRALRRKSRESGTIKTFALVGYTNVGKSSLFNRLTKSGI 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 240 YAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDLPHKLISAFSATLEETAQADVLLH 299

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 300 VVDAAAPNSGQQIEDVENVLQEIHAGDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 360 RISVAENTGIDALREAIAESCAAAPNTDETEMP 392


>gi|149175298|ref|ZP_01853920.1| ferrous iron transport protein B [Planctomyces maris DSM 8797]
 gi|148845907|gb|EDL60248.1| ferrous iron transport protein B [Planctomyces maris DSM 8797]
          Length = 767

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 72/218 (33%), Gaps = 29/218 (13%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K   + +    I I+G+ N GKS+LFN L+     I  + PG T +     +  EG  + 
Sbjct: 9   KQQTVQQQKMTIAIIGNPNTGKSTLFNQLSGGHAHI-GNFPGVTVEKKVGSVTWEGRKID 67

Query: 271 ISDTAGIRETDDIVEKEGIKR-----TFLEVENADLILLLKEINSKKE------ISFPKN 319
           + D  G          E +           V   D I+ + + ++ +            +
Sbjct: 68  LVDLPGTYSLAPRSIDEMLAVDVLLGRQKGVPRPDAIICIADASNLERNLYLFSQILDLS 127

Query: 320 IDFIFIGTKSDLYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFK 367
              + +    DL  +   E D                +  G+G++EL   I  I      
Sbjct: 128 TPVVLVLNMCDLARSRGIEIDATALSERLGQPVVCTEAHHGKGIKELKAAILKIDPGSRH 187

Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
           ++    P         ++  +  E    N+ +   D +
Sbjct: 188 EVQQLFPESFY-----TERAQLREKLESNQDESPPDFL 220


>gi|332291510|ref|YP_004430119.1| GTP-binding proten HflX [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169596|gb|AEE18851.1| GTP-binding proten HflX [Krokinobacter diaphorus 4H-3-7-5]
          Length = 409

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 69/180 (38%), Gaps = 15/180 (8%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALA 240
           + +  + + ++ D + L       I +    +    G   ++ ++G++N GKS+L N ++
Sbjct: 161 ETEIETDRRIVRDRITLLKKKMLTIDKQMATQRGNRGALVRVALVGYTNVGKSTLMNVIS 220

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           K  V    +    T D     + +      +SDT G          +  K T  EV  AD
Sbjct: 221 KSKV-FAENKLFATLDTTVRKVVVGNLPFLLSDTVGFIRKLPTQLVDSFKSTLDEVREAD 279

Query: 301 LILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           L+L + +I+  +                  +   + +  K D Y+    + + L+   TG
Sbjct: 280 LLLHVVDISHPQFEDHINAVNQILDEIESMDKPTLMVFNKIDAYTAEAYDDEDLMVERTG 339


>gi|240139575|ref|YP_002964051.1| putative GTPase (HflX) [Methylobacterium extorquens AM1]
 gi|240009548|gb|ACS40774.1| putative GTPase (HflX) [Methylobacterium extorquens AM1]
          Length = 471

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 80/221 (36%), Gaps = 31/221 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   +  ++ D+ +      L    R       + ++G++NAGKS+LFNAL K 
Sbjct: 192 EADRRMIQERMTRIERDLEAVTRTRGLHRKSRARVPYPIVALVGYTNAGKSTLFNALTKA 251

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V     +  T            G  V +SDT G             + T  +V  AD++
Sbjct: 252 EVRAQDMLFATLDPTARATKLPHGETVILSDTVGFISDLPTSLIAAFRATLEDVIEADIL 311

Query: 303 LLLKEINSKKEISFPKN--------------IDFIFIGTKSDLYST-------------- 334
           L +++++     +   +                 I +  K+DL                 
Sbjct: 312 LHVRDVSHGDTQAQADDVEGVLRELGIEADAERIIEVWNKADLLDEGERTRLLNLSAAHR 371

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
                  L+S+ TGEGL EL  +I+  ++        ++P 
Sbjct: 372 GAGPAPILVSALTGEGLPELTERIEGQVARARSTFAVTLPP 412


>gi|75908055|ref|YP_322351.1| GTP-binding protein, HSR1-like [Anabaena variabilis ATCC 29413]
 gi|75701780|gb|ABA21456.1| GTP-binding protein, HSR1-related protein [Anabaena variabilis ATCC
           29413]
          Length = 528

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           + +  + ++ ++ +    + + +H S+ +     R    + ++G++NAGKS+L NAL   
Sbjct: 318 ETERRAIQKRISRLQQEVDQLQAHRSRLRQRRQHREVPSVALVGYTNAGKSTLLNALTNA 377

Query: 243 DVA----IVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
           +V     +   +  TTR ++    +      + I+DT G          +  + T  EV 
Sbjct: 378 EVYTADQLFATLDPTTRRLVIPHAETGEPQGILITDTVGFIHELPASLMDAFRATLEEVT 437

Query: 298 NADLILLLKEINSKKEISFPK 318
            AD +L L +++    +S  +
Sbjct: 438 EADALLHLVDLSHPAWLSHIR 458


>gi|224012853|ref|XP_002295079.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969518|gb|EED87859.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 412

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 9/121 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ILG  N GKS+L N+L   ++AI T  P TTR  +   +  +   + ++DT GI +  
Sbjct: 111 VTILGKPNMGKSTLLNSLLSDNLAIATSRPQTTRHAILGVMTSDHNQLCLTDTPGIIDKT 170

Query: 282 DIVEKEGIKRTFL-EVENADLILLLKEINS------KKEISFPKNI--DFIFIGTKSDLY 332
               ++G+       V++ADL L++ +         +  +   K +    I    K DL 
Sbjct: 171 AYKLQDGMMDVVKGAVKSADLFLVVTDEEDPYLGIGEDTVKMIKQMEKPVIVCVNKVDLA 230

Query: 333 S 333
           S
Sbjct: 231 S 231


>gi|110798862|ref|YP_695455.1| ferrous iron transport protein B [Clostridium perfringens ATCC
           13124]
 gi|110673509|gb|ABG82496.1| ferrous iron transport protein B [Clostridium perfringens ATCC
           13124]
          Length = 707

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 19/172 (11%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           S +S+ K     +  Y + + G+ N GKS++FNAL   +     + PG T        + 
Sbjct: 11  SLLSKDKSRGNTKEDYVVALAGNPNVGKSTVFNALTGLNQ-HTGNWPGKTVAKAEGYYEF 69

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------EI 314
           +   +KI D  G        E+E I R ++   + D+++++ +  S +          EI
Sbjct: 70  KDSTIKIVDLPGTYSLLSNSEEEEIARDYICFNDPDIVVVVADATSLERNLNLFIQISEI 129

Query: 315 SFPKNIDFIF--------IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           +    +            I    DL S          S+  G G+EEL   I
Sbjct: 130 TEKAILCVNLTDEAEKNNIKIDLDLLSKELNANLVSSSARNGVGIEELKEAI 181


>gi|30023980|ref|NP_266379.2| hypothetical protein L0162 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281490711|ref|YP_003352691.1| GTP-binding protein HflX [Lactococcus lactis subsp. lactis KF147]
 gi|281374480|gb|ADA64001.1| GTP-binding protein HflX [Lactococcus lactis subsp. lactis KF147]
          Length = 414

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 19/230 (8%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-AIVT 248
           +  + +I      +       +        ++I ++G++NAGKSS+ NAL   D      
Sbjct: 170 RTRIENIDKALKKVEKTRENIRQKRSKSGIFRIGLIGYTNAGKSSIMNALVGLDKEQYEQ 229

Query: 249 DIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +    T D  T  + L E + V ++DT G  +       +  K T  E  N DL++ + +
Sbjct: 230 NELFATLDATTKAVKLVEDFTVSLTDTVGFIQNLPTELIKAFKSTLEESANVDLLIHVVD 289

Query: 308 INSKK------------EISFPKNIDFIFIGTKSDLYST---YTEEYDHLISSFTGEGLE 352
            ++              E     NI  + +  K D+  +    T      +S  +  G++
Sbjct: 290 ASNPHHEIHEQTVLKIMEDLKLTNIPVLNVYNKMDIAPSDFLPTLSPSLQLSIKSESGVQ 349

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
            L   I   L   F      +P  K   Y L +  +   + S+ E + G 
Sbjct: 350 WLKTAILEKLHELFDAFELELPYEK--AYQLPELRKSALVQSVVEGEKGY 397


>gi|68076099|ref|XP_679969.1| GTP-binding protein [Plasmodium berghei strain ANKA]
 gi|56500827|emb|CAH99774.1| GTP-binding protein, putative [Plasmodium berghei]
          Length = 264

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 43/272 (15%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND--------ISSHISQGKLGEII 216
           +T   +    +++F   ED+  + + E +     + +         ++  I + K  +I 
Sbjct: 1   ITPYLAKPFLNINFLNSEDIPFWLNSEYIKKGNTIFSSKIIAYPVYVAQTIHKYKPLDIP 60

Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDV-------LTIDLDLEGYL 268
           + G    I G SN GKSSL NAL   ++VA  +  PG TR +           +DL GY 
Sbjct: 61  QIG----IFGRSNVGKSSLINALMNYREVAQASKTPGRTRHLFIYNLLNHISVVDLPGYG 116

Query: 269 V-----KISDTAGIRETDDIVEKEGIKRTFLEVENA------DLILLLKEINSKKEISFP 317
                  + D   I   + + + + +KR    +E        D +LL        ++   
Sbjct: 117 FAKVSKNLRDNWSILIEEYLNKAKNLKRALCLIECTELFTPYDYVLL--------DMLIM 168

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH- 376
           KNI F  I TK D       E  H         +E    K+K+   NK KK       + 
Sbjct: 169 KNIPFQIIVTKID---KLKAEELHHAMVKIISIIENYKKKVKAFNENKHKKNNSFKKENC 225

Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408
           + ++      V  L+   + E    L +IA +
Sbjct: 226 EFNINEYLFNVSSLKRFGIQELRANLSLIALD 257


>gi|188996268|ref|YP_001930519.1| small GTP-binding protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931335|gb|ACD65965.1| small GTP-binding protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 197

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 26/167 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT--AGIRE 279
           I I+G SN GKSSL NA+ K+ +A V+  PG T+ +    L+ + Y V +     A +  
Sbjct: 27  IAIVGRSNVGKSSLINAIFKRSIAKVSATPGKTKLINFFLLNDDIYFVDLPGYGFAAVSH 86

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKSDL 331
            +    K  I+   L  EN +LI++L +     +  +I   +        +I +GTK D 
Sbjct: 87  KEKQNWKRMIEDYLLNRENLNLIIMLVDTRYPPTNLDILMKEWLESFEKPYIVVGTKIDK 146

Query: 332 YST----------------YTEEYDHLISSFTGEGLEELINKIKSIL 362
            +                   +   +L+S+  G  +++L + I S++
Sbjct: 147 LNQSEKAKAEKVIRETLDLSKDVPVYLVSAKEGTNIDKLTSDILSMV 193


>gi|119946045|ref|YP_943725.1| GTP-binding protein, HSR1-related [Psychromonas ingrahamii 37]
 gi|119864649|gb|ABM04126.1| GTP-binding protein, HSR1-related [Psychromonas ingrahamii 37]
          Length = 443

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 84/215 (39%), Gaps = 22/215 (10%)

Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALA 240
           E     +S+ + + I  LK +I     + +     R     + ++G++NAGKSSL  AL 
Sbjct: 183 ESAFEINSRRIRDKIADLKREIKKLQEEMQGRRSSRVEQLCVALVGYTNAGKSSLMRALT 242

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENA 299
             +V +V D    T D     L       + ISDT G  +            T  E ++A
Sbjct: 243 DSEV-LVEDKLFATLDTTVRTLQPPTQPRILISDTVGFIKKLPHDLVASFHSTLEEAKDA 301

Query: 300 DLILLLKEINSK---KEISFPKNI---------DFIFIGTKSDLYST------YTEEYDH 341
           DL+L + + + +    +++   ++         + + +  K D  S         +  D 
Sbjct: 302 DLLLYVVDASDENFTAQLAVVDHVLAELNVDASNRLLLLNKVDCISEERQLALLEQYPDA 361

Query: 342 LISSFTGEGLEELI-NKIKSILSNKFKKLPFSIPS 375
           L  S   +G   L+  +I+  L  K     F IP 
Sbjct: 362 LQISARNKGDVALVHQEIQDFLEKKMCPACFHIPY 396


>gi|21228678|ref|NP_634600.1| ferrous iron transport protein B [Methanosarcina mazei Go1]
 gi|20907182|gb|AAM32272.1| Ferrous iron transport protein B [Methanosarcina mazei Go1]
          Length = 670

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 79/209 (37%), Gaps = 30/209 (14%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K+ +++ N  ++ + G+ N GK+++FNA+       V + PG T +         G++++
Sbjct: 2   KVRKLVENKIRVALTGNPNVGKTTIFNAITGA-RQKVGNWPGVTVEKKIGTKAYGGHVLE 60

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIF 324
           I D  G          E + R ++  E  D+++ + +  + +              + I 
Sbjct: 61  IVDLPGTYSLTAYSADEVVARDYILEEKPDVVVQVLDSTNLERNLYLSTQLLEIGTNLIL 120

Query: 325 IGTKSDLYSTYTEEYD------------HLISSFTGEGLEELINKIKS---ILSNKFKKL 369
               SDL     E  +               ++   +G+ EL++ + S          K+
Sbjct: 121 ALNMSDLAEKRGEGLNAHALEKLPEVSLIKTTAKESKGINELLDAVISKSGSARPSNNKI 180

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
            +           + + +R+LE     ++
Sbjct: 181 EYG--------EKIEEKIRHLERVLAEDE 201


>gi|255022237|ref|ZP_05294232.1| Ferrous iron transport protein B [Acidithiobacillus caldus ATCC
           51756]
 gi|209574016|gb|ACI62946.1| ferrous ion uptake system FeoB [Acidithiobacillus caldus]
 gi|254968328|gb|EET25895.1| Ferrous iron transport protein B [Acidithiobacillus caldus ATCC
           51756]
          Length = 771

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 82/231 (35%), Gaps = 26/231 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G +I ++G+ N+GK++LFNAL       V + PG T +     L L+   + + D  G
Sbjct: 10  RGGRRIALVGNPNSGKTTLFNALTGAHQQ-VGNWPGVTVERREGRLRLDSGELIVVDLPG 68

Query: 277 IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKS 329
           +          + I R +++    D ++ + ++   +                + +    
Sbjct: 69  VYSLLGGGGVDQDIARAYVQNAQLDGLVQVVDVGQLQRHLLLTHELLHLGRPLLLVLNMM 128

Query: 330 D-------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           D             L           + +  GEGL +L   ++       + +P   P+ 
Sbjct: 129 DEARARRAVPDLDRLRQRLGGIAVLPMVARRGEGLAQLREALERDFPQGGEPVPALYPAE 188

Query: 377 KRH----LYHLSQTVRYLEMASLNEKDCGLDIIAE-NLRLASVSLGKITGC 422
             H    L   + T+  L+   + E        AE + R A   +   TG 
Sbjct: 189 LAHTLAQLAAQTPTLAALDRLRILEGLAPPPTDAEPHARRAREEIRAKTGE 239


>gi|116514796|ref|YP_813702.1| GTPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|116094111|gb|ABJ59264.1| GTPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 426

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 95/232 (40%), Gaps = 28/232 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAK- 241
             + + +   I  +K+++     Q ++    RN     K+ ++G++NAGKS+  N L K 
Sbjct: 168 EMNRRTIGKQISAIKHELKEISGQEEIKAARRNQSQLPKVALVGYTNAGKSTTMNGLLKA 227

Query: 242 -----KDVAIVT-DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
                +D  ++  D+   T D     +DL+G+   +SDT G          +  K T  E
Sbjct: 228 FGAGNEDKQVMAKDMLFATLDTSVRRIDLDGFSFILSDTVGFVSKLPHKLVDSFKATLQE 287

Query: 296 VENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTY---TEEY 339
            ++ADL++ + +                  EI   K++  I    K+DL        E  
Sbjct: 288 AKDADLLINVVDAADPNMNQMIKTTLEVLDEIGV-KDLPMITAYNKADLTDRNYPQIEGG 346

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYL 390
           D L S+     ++ L   I + L + ++     +P    + L +L Q  R L
Sbjct: 347 DLLYSAVDPASIQALAKLITTRLFSNYQITDLRLPLTAGKDLAYLHQHSRVL 398


>gi|119355958|ref|YP_910602.1| ferrous iron transport protein B [Chlorobium phaeobacteroides DSM
           266]
 gi|119353307|gb|ABL64178.1| ferrous iron transport protein B [Chlorobium phaeobacteroides DSM
           266]
          Length = 712

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 19/170 (11%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274
           I + G  + + G+ N GKSSLFN L       V +  G T +     LD +GY +K+ D 
Sbjct: 2   IEKKGISVALAGNPNCGKSSLFNVLTGA-RQKVGNFSGVTIEKHEGFLDFKGYSLKVVDL 60

Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------DFIFIGTK 328
            GI        +E + R +L  E  D+++ + E  + +              DF+     
Sbjct: 61  PGIYSLTPYSPEEIVTRRYLIDEKPDVVVNVIEGPNLERNLLLTTQMMEMEVDFVVALNM 120

Query: 329 SDLYSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKF 366
            D         D               S+    G++ L++ +        
Sbjct: 121 IDEVEEKGISIDVKQLQKLLGCHIIPTSAKKKTGIDSLLDHVVRAYRKDI 170


>gi|33865040|ref|NP_896599.1| GTPase [Synechococcus sp. WH 8102]
 gi|33638724|emb|CAE07019.1| possible GTPase [Synechococcus sp. WH 8102]
          Length = 431

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 76/207 (36%), Gaps = 34/207 (16%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
             +    +   L+ +++  +   +L  +     ++ + G    GKSSL NAL  + +   
Sbjct: 25  DLRLTRREQGLLRGELT--LLDRQLQRLEHKVLRLAVFGRVGVGKSSLINALVGQRLLET 82

Query: 248 TDIPGTTR--DVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENA---DL 301
               G+TR    +T  L L+G   V++ DT GI E D         RT L    A   DL
Sbjct: 83  DVAHGSTRRQQAVTWPLKLDGLQRVELIDTPGIDEIDAAG------RTRLATRVAMGVDL 136

Query: 302 ILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
           +LL+ + +         E           +  +SD +                E L EL+
Sbjct: 137 VLLVIDSDLTRCDRDALETLQASGKPVRLVLNRSDRWPE--------------EQLPELL 182

Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYH 382
           + I+S L +       +    +  L  
Sbjct: 183 DSIRSRLPSDLPLTAVAAAPRQPRLDA 209


>gi|240128357|ref|ZP_04741018.1| GTP-binding protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 374

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 72/213 (33%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDV 244
             +   + I  LK  +++   Q  L    R   +I    ++G++N GKSSLFN L K  +
Sbjct: 162 DRRLTAHRINALKKQLANLKKQRALRRKSRESGRIKTFALVGYTNVGKSSLFNRLTKSGI 221

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 222 YAKDQLFATLDTTARRLYISPACSIILTDTVGFVSDLPHKLISAFSATLEETVQADVLLH 281

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS+++I   +N         I  I +  K+DL  +  +               
Sbjct: 282 VVDAAARNSRQQIEDVENVLQEIHAHDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 341

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 342 RISVAENTGIDALREAIAEYCAAAPNTDETEMP 374


>gi|160902430|ref|YP_001568011.1| ferrous iron transport protein B [Petrotoga mobilis SJ95]
 gi|160360074|gb|ABX31688.1| ferrous iron transport protein B [Petrotoga mobilis SJ95]
          Length = 669

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 7/140 (5%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E +    +I I+G+ N GK+SLFN L       V + PG T +    +   +G   K+ D
Sbjct: 11  ETVNKEAEISIIGNPNVGKTSLFNLLTGTKQ-YVANWPGVTVEKKVGNFKYKGKTFKLVD 69

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGT 327
             G+       E E + + +L   ++++++++ +  + +   F         +  I +  
Sbjct: 70  LPGVYTLSAKSEDERVAKDYLISNSSEIVIVVADALNLESSMFLLFQLIEIGVKTILVIN 129

Query: 328 KSDLYSTYTEEYDHLISSFT 347
             D         D    S T
Sbjct: 130 AVDEAREKGRIIDPSPISKT 149


>gi|28872055|ref|NP_794674.1| GTP-binding protein HflX [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213967925|ref|ZP_03396071.1| GTP-binding protein HflX [Pseudomonas syringae pv. tomato T1]
 gi|301384445|ref|ZP_07232863.1| GTP-binding protein HflX [Pseudomonas syringae pv. tomato Max13]
 gi|302064112|ref|ZP_07255653.1| GTP-binding protein HflX [Pseudomonas syringae pv. tomato K40]
 gi|302132267|ref|ZP_07258257.1| GTP-binding protein HflX [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|28855308|gb|AAO58369.1| GTP-binding protein HflX [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213927268|gb|EEB60817.1| GTP-binding protein HflX [Pseudomonas syringae pv. tomato T1]
 gi|330873784|gb|EGH07933.1| GTP-binding protein HflX [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 433

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 90/253 (35%), Gaps = 25/253 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN++   DV    D    T
Sbjct: 174 QIKGRLEKVRSQRDQARRGRRRADIPSVSLVGYTNAGKSTLFNSVTDSDV-FAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L     + ++DT G          E  + T  E  N+DL+L + + +    
Sbjct: 233 LDPTLRRLQLNDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDSHEPDR 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +S              + +  + +  K DL      +             +S+  G GL+
Sbjct: 293 MSQIEQVMAVLGEIGAEGLPILEVYNKLDLLEGVEPQIQRDADGKPQRVWVSARDGRGLD 352

Query: 353 ELINKIKSILSNK 365
            L   I  +L + 
Sbjct: 353 LLKQAIAELLGDD 365


>gi|16799830|ref|NP_470098.1| hypothetical protein lin0756 [Listeria innocua Clip11262]
 gi|16413207|emb|CAC95988.1| lin0756 [Listeria innocua Clip11262]
          Length = 418

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 90/246 (36%), Gaps = 28/246 (11%)

Query: 188 SSKEVLNDILFLKNDISSHISQGK---LGEIIRNGYKIVILGHSNAGKSSLFNALAK--- 241
             + + + I  L+ ++   +   +             + ++G++NAGKS+  N L +   
Sbjct: 159 DRRTIKHQIRHLQKELDMLVDDREVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYS 218

Query: 242 ----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
               K V     +  T    +   +  +     ++DT G          +  + T  E  
Sbjct: 219 ETADKQVFEKDMLFATLETSVREIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEEAR 278

Query: 298 NADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYS----TYTEEYDH 341
           +ADL++ + + +     +  K            ++  I+   K+DL          E   
Sbjct: 279 DADLLIHVVDYSDPHYKTMMKTTEETLKAVGVEDVPVIYAYNKADLIEGEIYPKQTENTI 338

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           + S+   E LE L   I+  L   ++K  F IP    ++        + ++ +    + G
Sbjct: 339 VFSAREEESLEFLTEVIRKELFASYEKATFLIPFEAGNVVAYLN--DHADVLATEYLENG 396

Query: 402 LDIIAE 407
            +I+AE
Sbjct: 397 TEIVAE 402


>gi|238784773|ref|ZP_04628775.1| GTP-binding protein hflX [Yersinia bercovieri ATCC 43970]
 gi|238714286|gb|EEQ06296.1| GTP-binding protein hflX [Yersinia bercovieri ATCC 43970]
          Length = 428

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 95/280 (33%), Gaps = 30/280 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ + 
Sbjct: 114 RARTHEGKLQVELAQLRHIATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDRIT 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     ++    QG+      +   + ++G++NAGKSSLFN +   DV    D    T
Sbjct: 173 LILSRLERVAKQREQGRRARTRADIPTVSLVGYTNAGKSSLFNKITAADV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     +++       ++DT G             K T  E   A L+L + +    + 
Sbjct: 232 LDPTLRRINVADVGDTVLADTVGFIRHLPHDLVAAFKATLQETRQASLLLHIIDAADPRV 291

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGL 351
                       EI     I  + +  K DL   +    D           +S+ TG G+
Sbjct: 292 TENMAAVDAVLAEIE-ADEIPTLLVMNKIDLLDDFVPRIDRNEDNLPVRVWLSAQTGAGI 350

Query: 352 EELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
             L   +   LS +       +P      R  ++  Q + 
Sbjct: 351 PLLFQALTERLSGEIAHYELRLPPQAGRLRSRFYQLQAIE 390


>gi|325694698|gb|EGD36604.1| GTP-binding protein HflX [Streptococcus sanguinis SK150]
          Length = 412

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 25/235 (10%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKAVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNCLTSKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T +++L G L V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKNINLSGQLNVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPHHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKI 358
            K            +I  + +  K+D    +T     + + S   +    L+ ++
Sbjct: 296 EKTVLDIMNELDMLDIPRLTLYNKADKTEDFTPTLTPYSLISAKADNSRALLQQV 350


>gi|146310021|ref|YP_001175095.1| putative GTPase HflX [Enterobacter sp. 638]
 gi|145316897|gb|ABP59044.1| GTP-binding protein HflX [Enterobacter sp. 638]
          Length = 426

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 97/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIT 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+      +   + ++G++NAGKS+LFN +   +V    D    T
Sbjct: 173 QILSRLARVEKRREQGRRSRTKADIPTVSLVGYTNAGKSTLFNQITNAEV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHIIDAADFRL 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+  E     +I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIDAVNTVLEEIEADDIPTLLVMNKIDMLEDFEPRIDRDDENKPIRVWLSAQTGVGVP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQTVR 388
            L   +   LS +  +    +P  +   R  ++  Q + 
Sbjct: 352 LLFQALTERLSGEVAQHTLRLPPQEGKLRSRFYQLQAIE 390


>gi|319410516|emb|CBY90879.1| tRNA modification GTPase mnmE [Neisseria meningitidis WUE 2594]
          Length = 392

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 70/213 (32%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + + + I  LK  +++   Q  L    R         ++G++N GKSSLFN L K  +
Sbjct: 180 DRRLIAHRINALKKQLANLKKQRALRRKSRESGTIKTFALVGYTNVGKSSLFNRLTKSGI 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 240 YAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDLPHKLISAFSATLEETAQADVLLH 299

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 300 VVDAAAPNSGQQIEDVENVLQEIHAGDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 360 RISVAENTGIDALREAIAESCAAAPNTDETEMP 392


>gi|312870722|ref|ZP_07730829.1| GTP-binding protein HflX [Lactobacillus iners LEAF 3008A-a]
 gi|311093734|gb|EFQ52071.1| GTP-binding protein HflX [Lactobacillus iners LEAF 3008A-a]
          Length = 427

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 27/216 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
             + + +   I  +K D+     Q K+    RN     ++ ++G++N+GKS+  N L  +
Sbjct: 164 ELNRRTIQQQISNIKKDLKKINQQEKIKATQRNNSFLPQVALVGYTNSGKSTTLNNLLNE 223

Query: 243 -------DVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFL 294
                        D+   T D     +DLE  L   ISDT G          E  K T  
Sbjct: 224 YSKSADKKQVFTKDMLFATLDTHVRRIDLENKLSFIISDTVGFVSNLPHNLIESFKATLQ 283

Query: 295 EVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDL----YSTYTEE 338
           EV +ADLI+ + + +    +   +            ++  I    K D     Y      
Sbjct: 284 EVRDADLIINVVDASDPNILQMIQTTTKVLDELQIGDVPIITAFNKVDKTDRSYPQIEGN 343

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            + L S+   E +  L   I++ + +  + +   +P
Sbjct: 344 GNILYSAKDPESIRLLAKLIQNKIFSNLQVVELFLP 379


>gi|332359393|gb|EGJ37213.1| GTP-binding protein HflX [Streptococcus sanguinis SK355]
          Length = 412

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 25/235 (10%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKAVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNCLTSKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T +++L G L V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKNINLSGQLNVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPHHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKI 358
            K            +I  + +  K+D    +T     + + S   +    L+ ++
Sbjct: 296 EKTVLDIMKELDMLDIPRLTLYNKADKAEHFTPTLTPYSLISAKADNSRALLQQV 350


>gi|327470774|gb|EGF16230.1| GTP-binding protein HflX [Streptococcus sanguinis SK330]
          Length = 412

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 25/235 (10%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKAVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNCLTSKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T +++L G L V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKNINLSGQLNVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPHHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKI 358
            K            +I  + +  K+D    +T     + + S   +    L+ ++
Sbjct: 296 EKTVLDIMKELDMLDIPRLTLYNKADKAEHFTPTLTPYSLISAKADNSRALLQQV 350


>gi|206889897|ref|YP_002249106.1| GTP-binding protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741835|gb|ACI20892.1| GTP-binding protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 509

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 92/246 (37%), Gaps = 32/246 (13%)

Query: 150 MSGELSSLYGQWIDKLTHIRSFIEA-------DLDFSEEEDVQNFSSKEVLNDILFLKND 202
           M G++     Q    L  +     A              E       + +   I  L+N+
Sbjct: 258 MDGKVQVELAQLRYMLPRLTGKGTAMSRLAGGIGGRGPGETKLELDRRRINKRIHHLENE 317

Query: 203 ISSH----ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
           +       I + K  + +     + I+G++NAGKS+L NAL K  V  V D    T D  
Sbjct: 318 LEKLTLARIERKKRRKELSIPI-VSIIGYTNAGKSTLLNALTKSSV-FVEDKMFATLDTS 375

Query: 259 TIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317
           +  L   E   + I+DT G             K T  E+++A L++ L +I++ +  +  
Sbjct: 376 SRRLKFPEEKELIITDTVGFIRDLPDDLVAAFKATLEELQDASLLIHLVDISNPQFENHI 435

Query: 318 KN------------IDFIFIGTKSDLYSTYTEEYDHLI------SSFTGEGLEELINKIK 359
           ++               I +  K D  S+   +           S+   + L  LI++IK
Sbjct: 436 ESVNRILSQLGLDIKPVILVFNKIDKLSSLETKQICNRYNAIGISAIDKKTLIPLIDEIK 495

Query: 360 SILSNK 365
           + L  +
Sbjct: 496 NRLWEE 501


>gi|170758960|ref|YP_001788547.1| ribosome biogenesis GTP-binding protein YsxC [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169405949|gb|ACA54360.1| GTP-binding protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 194

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 73/187 (39%), Gaps = 28/187 (14%)

Query: 200 KNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAI-VTDIPGTTRDV 257
                  IS  K G+   +G  ++  +G SN GKS+L N L  +   + V+  PG TR +
Sbjct: 5   IKKAEFIISAVKKGQYPEDGRPEVAFVGRSNVGKSTLINTLTNRRKLVKVSSTPGKTRLI 64

Query: 258 LTIDLDLEGYLVKIS--DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
               ++   Y V +     A + + +       +++  +E +    I+LL +   K    
Sbjct: 65  NFFVINDNMYFVDLPGYGYAKVSKREKENWGYIMEQYLVERDQLKKIVLLVDSRHKPTSD 124

Query: 316 FPK--------NIDFIFIGTKSDLYSTY----------------TEEYDHLISSFTGEGL 351
                      N + + +GTK D                      ++   LISS + EG 
Sbjct: 125 DINMYNWIKHYNYEVLVVGTKLDKLKRNDINKNKKIIRDTLKMDKDDKILLISSLSKEGK 184

Query: 352 EELINKI 358
           EE++ +I
Sbjct: 185 EEVLEQI 191


>gi|325128329|gb|EGC51213.1| GTP-binding proten HflX [Neisseria meningitidis N1568]
          Length = 392

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 70/213 (32%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + + + I  LK  +++   Q  L    R         ++G++N GKSSLFN L K  +
Sbjct: 180 DRRLIAHRINALKKQLANLKKQRALRRKSRESGTIKTFALVGYTNVGKSSLFNRLTKSGI 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 240 YAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDLPHKLISAFSATLEETAQADVLLH 299

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 300 VVDAAAPNSGQQIEDVENVLQEIHAGDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 360 RISVAENTGIDALREAIAESCAAAPNTDETEMP 392


>gi|305662547|ref|YP_003858835.1| GTP-binding proten HflX [Ignisphaera aggregans DSM 17230]
 gi|304377116|gb|ADM26955.1| GTP-binding proten HflX [Ignisphaera aggregans DSM 17230]
          Length = 359

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 81/213 (38%), Gaps = 32/213 (15%)

Query: 186 NFSSKEVLNDILFLKNDISSHI--SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKK 242
           +   + +   I  L  +++      + +  +    G+  + I+G++NAGK++LFN L+  
Sbjct: 148 DVYYRHIKRRISKLNKELAQMRIKRESERAKRKDLGFIHVSIVGYTNAGKTTLFNVLSNL 207

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           D    T++  TT       L + G    + DT G      +   E  K    E+  +DLI
Sbjct: 208 DKPTGTEMF-TTLSTKISTLKICGKTFALIDTVGFIRKIPVTIIESFKAVLEEISYSDLI 266

Query: 303 LLLKEINSKKEISFPK--------------NIDFIFIGTKSDL----------YSTYTEE 338
           LL+ +I+  +E    +                  + I  K DL          YS     
Sbjct: 267 LLVVDISKDEEKLLDEIHTSIEILRTIGAIGKPIVLILNKIDLVNDNSIDKKIYSVLKNV 326

Query: 339 YDHLISSFTGEGLEEL----INKIKSILSNKFK 367
            D  I+      +  L    I+++K +L    +
Sbjct: 327 KDKDINIIDYVPISALNRTNIDRVKEVLCKYAE 359


>gi|282851786|ref|ZP_06261149.1| conserved domain protein [Lactobacillus gasseri 224-1]
 gi|282557028|gb|EFB62627.1| conserved domain protein [Lactobacillus gasseri 224-1]
          Length = 95

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 36/72 (50%)

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            N L  + VAI++  P TTR+ ++     +   +   DT GI +  + ++    K ++  
Sbjct: 1   MNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFIDTPGIHKPKNKLDDFMDKSSYSA 60

Query: 296 VENADLILLLKE 307
           ++  D++L + E
Sbjct: 61  LDEVDVVLFMVE 72


>gi|224368206|ref|YP_002602369.1| FeoB1 [Desulfobacterium autotrophicum HRM2]
 gi|223690922|gb|ACN14205.1| FeoB1 [Desulfobacterium autotrophicum HRM2]
          Length = 723

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 70/203 (34%), Gaps = 20/203 (9%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
           N   I + G+ N GK+++FN L       V + PG T +     +  +G  +K  D  G 
Sbjct: 2   NQLTIALAGNPNCGKTTIFNNLTGA-RQKVGNWPGVTVEKKEGVVKHKGLDLKFVDLPGT 60

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDL 331
                   +E + R F+  E  D+++ + +  + +   +        +   +F+   +DL
Sbjct: 61  YSLTPFSLEEIVARDFILNEKPDVVVNIIDAANLERSLYLAMQIMELDRPVVFVLNMADL 120

Query: 332 ------------YSTYTEEYDHLISSFTGEGLEELIN-KIKSILSNKFKKLPFSIPSHKR 378
                        ST              +G   L+   IK   +    K    +  ++ 
Sbjct: 121 AKSKGLSINAAKLSTLLNLPVIFTVGNRDQGTNLLVETAIKEAQAASGGKSGRKVTYNRE 180

Query: 379 HLYHLSQTVRYLEMASLNEKDCG 401
               + +    ++   L+  +  
Sbjct: 181 IETLIREIEAAMDRGGLDLDNWP 203


>gi|23011756|ref|ZP_00052024.1| COG2262: GTPases [Magnetospirillum magnetotacticum MS-1]
          Length = 376

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 31/221 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKK 242
               + +   +  ++ D+ +      L    R       + ++G++NAGKS+LFNAL K 
Sbjct: 97  EADRRMIQERMTRIERDLDAVTRTRGLHRKSRARVPYPIVALVGYTNAGKSTLFNALTKA 156

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302
           +V     +  T            G  V +SDT G             + T  +V  AD++
Sbjct: 157 EVKAQDMLFATLDPTARATKLPHGETVILSDTVGFISDLPTSLIAAFRATLEDVIEADIL 216

Query: 303 LLLKEINSKKEISFPKN--------------IDFIFIGTKSDLYST-------------- 334
           L +++++     +  ++                 I +  K+DL                 
Sbjct: 217 LHVRDVSHGDTQAQAEDVEAVLRELGIKADADRIIEVWNKADLLDEGERTRLLNLSAAHR 276

Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375
            T     L+S+ TGEGL  L  +I+S ++        S+P 
Sbjct: 277 GTGPAPILVSALTGEGLPALAERIESQVARARSTFAVSLPP 317


>gi|328951761|ref|YP_004369095.1| GTP-binding proten HflX [Desulfobacca acetoxidans DSM 11109]
 gi|328452085|gb|AEB07914.1| GTP-binding proten HflX [Desulfobacca acetoxidans DSM 11109]
          Length = 569

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 20/242 (8%)

Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222
           D L+ +   I        + ++     +E L+ +    + +       +     +    I
Sbjct: 321 DALSRLTGGIGGRGPGETKLEIDRRRVRERLHRLAQELDQVRDERRVRRGPRQRQGLPII 380

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            I+G++NAGKS+L N L + +V +  D    T D  +  L       V I+DT G     
Sbjct: 381 SIVGYTNAGKSTLLNTLTRAEV-LAEDRLFATLDPTSRRLRFPKEREVIITDTVGFIRDL 439

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329
                E  K T  E+E+ADL+L + ++++ +     +            +   + +  K 
Sbjct: 440 PKDLLEAFKATLEELEDADLLLHVIDLSNPRFEEQMETVDTILASLELSDKPVLKVFNKI 499

Query: 330 DLYSTYTEEYDHLI------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
           DL +    ++          S+  G  L  L+ +++ I+     +   S          +
Sbjct: 500 DLIAPEIAQWQCRRHNGVAISALDGGTLRPLLTRMEEIIDRILPREQISSAEQDAVAEAM 559

Query: 384 SQ 385
            +
Sbjct: 560 RE 561


>gi|206580841|ref|YP_002240872.1| GTP-binding proten HflX [Klebsiella pneumoniae 342]
 gi|288937528|ref|YP_003441587.1| GTP-binding proten HflX [Klebsiella variicola At-22]
 gi|290512267|ref|ZP_06551634.1| GTP-binding protein HflX [Klebsiella sp. 1_1_55]
 gi|206569899|gb|ACI11675.1| GTP-binding proten HflX [Klebsiella pneumoniae 342]
 gi|288892237|gb|ADC60555.1| GTP-binding proten HflX [Klebsiella variicola At-22]
 gi|289775262|gb|EFD83263.1| GTP-binding protein HflX [Klebsiella sp. 1_1_55]
          Length = 426

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 94/279 (33%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIM 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+      +   + ++G++NAGKS+LFN +   +V    +    T
Sbjct: 173 QILSRLEKVEKQREQGRRSRAKADIPTVSLVGYTNAGKSTLFNQITAAEV-YAANQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVPDVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+         I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIDAVNTVLAEIEADEIPALMVMNKIDMLDDFEPRIDRDDENKPIRVWLSAQTGVGVP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            L   +   LS +  +    +P      R  ++  Q + 
Sbjct: 352 LLFQALTERLSGEVAQHTLRLPPKEGRLRSRFYQLQAIE 390


>gi|34498987|ref|NP_903202.1| GTP-binding protein hflX [Chromobacterium violaceum ATCC 12472]
 gi|34104837|gb|AAQ61194.1| GTP-binding protein hflX [Chromobacterium violaceum ATCC 12472]
          Length = 376

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 67/195 (34%), Gaps = 23/195 (11%)

Query: 197 LFLKNDISSHISQGKLGEIIRNGY---KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             LK+ ++    Q       RN      + I+G++NAGKS+LFNAL K ++     +  T
Sbjct: 172 KALKDRLAQVQKQRNTQRRSRNRAGVSSVSIVGYTNAGKSTLFNALTKANIYAADQLFAT 231

Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-INSKK 312
                          V +SDT G             + T  E   A+L+L + +  N  +
Sbjct: 232 LDTTSRKLFLNHDCSVVLSDTVGFIRDLPHTLVAAFRATLEETVQANLLLHVVDCANETR 291

Query: 313 EISF-----------PKNIDFIFIGTKSDLYSTYTE--------EYDHLISSFTGEGLEE 353
           +                 I  + +  K DL     E             +S+  GEGLE 
Sbjct: 292 DAQIDEVNKVLAEIDADGIPQLIVWNKGDLRELPPEIERDEDGVAVAVRVSALKGEGLEL 351

Query: 354 LINKIKSILSNKFKK 368
           L   I   +      
Sbjct: 352 LREAIAERVQPFANN 366


>gi|307637195|gb|ADN79645.1| GTP-binding protein [Helicobacter pylori 908]
 gi|325995784|gb|ADZ51189.1| GTP-binding protein [Helicobacter pylori 2018]
 gi|325997380|gb|ADZ49588.1| GTP-binding protein [Helicobacter pylori 2017]
          Length = 301

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 23/190 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGY--LVKISDTAG 276
           + ++G  NAGKS+L N L    +A+V+     TR ++   +   D EGY   +   DT G
Sbjct: 8   VALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPG 67

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----KEISFPKNIDFIFIGTKSDLY 332
           +   + ++ +  + +    + +A+L + L  ++      +E         I   +K D  
Sbjct: 68  LHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127

Query: 333 S-----TYTEEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
           +        +EY    S F           + L  L+  I   LS         + S ++
Sbjct: 128 THKQVLQKLQEYQKYASQFLDLVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEK 187

Query: 379 HLYHLSQTVR 388
                 + +R
Sbjct: 188 MCDIYKEIIR 197


>gi|308069362|ref|YP_003870967.1| GTP-binding protein hflX [Paenibacillus polymyxa E681]
 gi|305858641|gb|ADM70429.1| GTP-binding protein hflX [Paenibacillus polymyxa E681]
          Length = 428

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 6/225 (2%)

Query: 92  VNGILEELAKMPNLRLANPGEFSRRAFENGK----IDLLEAESLADLISSETEMQRRLSM 147
           +  + EEL     +          R  E       ID  +         ++T        
Sbjct: 76  LRAVAEELGANTAIFDQELSGAQVRNLEESLDLKIIDRTQLILDIFAQRAKTREGIIQVE 135

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI 207
                 L          L+ +   I        + +      ++ ++D+     +++ H 
Sbjct: 136 LAQLSYLLPRLSGHGKNLSRLGGGIGTRGPGESKLETDRRHIRDRISDLKRQLEEVTRHR 195

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-G 266
              +         ++ ++G++NAGKS+L   L   DV I  +    T D  +  ++L  G
Sbjct: 196 YLHRERRQKSGIVQVALVGYTNAGKSTLLKQLTAADVYI-ENQLFATLDPTSRTMELPSG 254

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
             V ++DT G  +          + T  E   A LIL + + +S 
Sbjct: 255 KEVILTDTVGFIQNLPHDLVASFRATLEEANEAHLILHVVDASSD 299


>gi|52080368|ref|YP_079159.1| GTP-binding protein [Bacillus licheniformis ATCC 14580]
 gi|52785746|ref|YP_091575.1| YnbA [Bacillus licheniformis ATCC 14580]
 gi|319645675|ref|ZP_07999906.1| YnbA protein [Bacillus sp. BT1B_CT2]
 gi|52003579|gb|AAU23521.1| GTP-binding protein [Bacillus licheniformis ATCC 14580]
 gi|52348248|gb|AAU40882.1| YnbA [Bacillus licheniformis ATCC 14580]
 gi|317392222|gb|EFV73018.1| YnbA protein [Bacillus sp. BT1B_CT2]
          Length = 420

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 28/206 (13%)

Query: 141 MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200
            Q + ++  +SG+  +L  Q     T      + + D            + + N I  + 
Sbjct: 130 AQLQYALPRLSGQGINLSRQGGGIGTRGPGETKLETD-----------RRHIRNRIHEIN 178

Query: 201 NDISSHISQGKLGEII--RNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
             +S+ I           +NG  +I ++G++NAGKS+ FN L   D +   ++   T D 
Sbjct: 179 VQLSTVIRHRSRYRERRKKNGVLQIALVGYTNAGKSTWFNRLTDAD-SYEENLLFATLDP 237

Query: 258 LTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---- 312
           +T  + L  GY V +SDT G  +          + T  EV+ ADLIL + + + +     
Sbjct: 238 MTRKMMLPSGYSVLLSDTVGFIQDLPTTLIAAFRSTLEEVKEADLILHMIDSSHEDYEGH 297

Query: 313 --------EISFPKNIDFIFIGTKSD 330
                   E     +I  + +  K D
Sbjct: 298 EETVKRLLEELEADDIPVLTVYNKRD 323


>gi|85710755|ref|ZP_01041816.1| GTPase, HflX [Idiomarina baltica OS145]
 gi|85695159|gb|EAQ33096.1| GTPase, HflX [Idiomarina baltica OS145]
          Length = 412

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 99/292 (33%), Gaps = 28/292 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 99  RARTHEGKLQVELAQLRHISTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLIRGRIK 157

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +IL     +     QG+          + ++G++NAGKS+LFN +  +      D    T
Sbjct: 158 NILRRLEKVQKQREQGRRARQRAEIPTVSLVGYTNAGKSTLFNTMT-ESGVYAADQLFAT 216

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L++E    + ++DT G             K T  E + AD++L + ++  + +
Sbjct: 217 LDPTLRKLEVEDVGRIILADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDVADEHQ 276

Query: 314 ISFPKN------------IDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
            S  +             +  + I  K D         D           +S+    G E
Sbjct: 277 QSNIEQVSEVLDEIGAGEVPQLMICNKIDKLEDSAPRIDRDDEGKPVRVWVSAQDNIGTE 336

Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404
            +   +K  L  +   L   +P     +  L  T+  L   S    D   ++
Sbjct: 337 LIFEALKERLGPQMVNLSLKLPP---SMGKLRGTLYQLNSVSAERIDEQGEL 385


>gi|332796801|ref|YP_004458301.1| GTP binding protein [Acidianus hospitalis W1]
 gi|332694536|gb|AEE94003.1| GTP binding protein [Acidianus hospitalis W1]
          Length = 329

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 77/181 (42%), Gaps = 24/181 (13%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270
           K+  I      ++I G  N GKS+L + ++     I  + P TT+++     D+ G  V+
Sbjct: 150 KMKSIDPEMPTVIIAGSPNVGKSTLVSKISSAKPEI-ANYPFTTKEIHVGHFDINGIKVQ 208

Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENAD-LILLLKEINS------KKEISFPK----- 318
           + DT GI +       +  ++    ++N + +I+ L +I+       K++    +     
Sbjct: 209 VIDTPGILDRPMKERNQIERKAINAIKNLNGIIVFLFDISQQSLYSPKEQFDLLREILEF 268

Query: 319 NIDFIFIGTKSD-----LYSTYTEEYDHL------ISSFTGEGLEELINKIKSILSNKFK 367
           N + I    K D     LY+  ++           IS+    G+++L  +IK  +    K
Sbjct: 269 NKNAIIALNKIDSKDEKLYAEVSKMLRENSLNFMEISAENNIGIDDLKEEIKKRVLEMVK 328

Query: 368 K 368
           +
Sbjct: 329 Q 329


>gi|330003345|ref|ZP_08304588.1| GTP-binding protein HflX [Klebsiella sp. MS 92-3]
 gi|328537007|gb|EGF63297.1| GTP-binding protein HflX [Klebsiella sp. MS 92-3]
          Length = 426

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 94/279 (33%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 114 RARTHEGKLQVELAQLRHMATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIM 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+      +   + ++G++NAGKS+LFN +   +V    +    T
Sbjct: 173 QILSRLEKVQKQREQGRRSRAKADIPTVSLVGYTNAGKSTLFNQITAAEV-YAANQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     +D+       ++DT G             K T  E   A L+L + +      
Sbjct: 232 LDPTLRRIDVPDVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N+         I  + +  K D+   +    D           +S+ TG G+ 
Sbjct: 292 QENIDAVNTVLAEIEADEIPALLVMNKIDMLDDFEPRIDRDDENKPIRVWLSAQTGVGVP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            L   +   LS +  +    +P      R  ++  Q + 
Sbjct: 352 LLFQALTERLSGEVAQHTLRLPPKEGRLRSRFYQLQAIE 390


>gi|325685325|gb|EGD27436.1| GTP-binding protein HflX [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 427

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 94/232 (40%), Gaps = 28/232 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALA-- 240
             + + +   I  +K+++     Q ++    RN     K+ ++G++NAGKS+  N L   
Sbjct: 169 EMNRRTIGKQISAIKHELKEISGQEEIKAARRNQSQLPKVALVGYTNAGKSTTMNGLLEA 228

Query: 241 ----KKDVAIVT-DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
                +D  ++  D+   T D     +DL+G+   +SDT G          +  K T  E
Sbjct: 229 FGAGNEDKQVMAKDMLFATLDTSVRRIDLDGFSFILSDTVGFVSKLPHKLVDSFKATLKE 288

Query: 296 VENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTY---TEEY 339
            ++ADL++ + +                  EI   K++  I    K+DL        E  
Sbjct: 289 AKDADLLINVVDAADPNMNQMIKTTLEVLDEIGV-KDLPMITAYNKADLTDRNYPQIEGG 347

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYL 390
           D L S+     ++ L   I + L + ++     +P    + L +L Q  R L
Sbjct: 348 DLLYSAVDPASIQALAKLITTRLFSNYQITDLRLPLTAGKDLAYLHQHSRVL 399


>gi|260592819|ref|ZP_05858277.1| ferrous iron transport protein B [Prevotella veroralis F0319]
 gi|260535189|gb|EEX17806.1| ferrous iron transport protein B [Prevotella veroralis F0319]
          Length = 827

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 30/220 (13%)

Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
           K  E       + ++G+ N GK+SLFN  +   +   V +  G T D      + EGY  
Sbjct: 112 KEAERRSKTISVALVGNPNCGKTSLFNFASGAHER--VGNYSGVTVDAKVGRAEYEGYEF 169

Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----NIDFIFI 325
            + D  G         +E   R  L  E  D+++ + + ++ +   +      ++    +
Sbjct: 170 HLVDLPGTYSLSAYSPEELYVRKQLVEETPDIVINVIDASNLERNLYLTTQLIDMHVRMV 229

Query: 326 --GTKSDLYSTYTEEYDHLISS------------FTGEGLEELINKIKSILSNKFKKLPF 371
                 D      +  D+   S             +G G++EL +++ ++      K   
Sbjct: 230 CALNMYDETEERGDHIDYEKLSELFGTPMVPTVFTSGRGVKELFHQVIAVYE---GKEDE 286

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411
           S+     H+ H  +    +     + K+        +LR 
Sbjct: 287 SLQFRHIHINHGHEIEHGIRDIQEHLKNYP------DLRQ 320


>gi|224500621|ref|ZP_03668970.1| hypothetical protein LmonF1_13481 [Listeria monocytogenes Finland
           1988]
 gi|254898539|ref|ZP_05258463.1| hypothetical protein LmonJ_01950 [Listeria monocytogenes J0161]
 gi|254911970|ref|ZP_05261982.1| GTP-binding domain-containing protein [Listeria monocytogenes
           J2818]
 gi|254936297|ref|ZP_05267994.1| GTP-binding domain-containing protein [Listeria monocytogenes
           F6900]
 gi|258608887|gb|EEW21495.1| GTP-binding domain-containing protein [Listeria monocytogenes
           F6900]
 gi|293589933|gb|EFF98267.1| GTP-binding domain-containing protein [Listeria monocytogenes
           J2818]
          Length = 407

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 104/297 (35%), Gaps = 53/297 (17%)

Query: 82  EFHVHGGIA---VVNGILEELAKMPNLRLANPGEFSRRAFE-----------NGKIDLLE 127
           E H     A   V++ ++++L ++        G+    A             N ++   +
Sbjct: 27  ELHSLAKTANAEVMDELIQKLERVNQASFIGSGKLDELAALVEMHEADVVIFNSELSATQ 86

Query: 128 AESLADLISSE--TEMQRRL---SM--EGMSGELSSLYGQWIDKL-------THIRSFIE 173
             +++  + +      Q  L   +M  +   G+L   Y Q+   L         +     
Sbjct: 87  VRNISAAVEARIIDRTQLILDIFAMCAKSREGKLQVAYAQYKYLLPRLSGQGISLSKLGG 146

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG----YKIVILGHSN 229
                   E       + +   +  +K  + +H+ Q +   I R      ++  ++G++N
Sbjct: 147 GIGSRGPGESKLEMDKRHIREKMHDIKAQL-THVEQHRKRIIERRNTQSVFRFGLIGYTN 205

Query: 230 AGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           AGKS++FN L  +    +  +   +  TTR V        G+   ++DT G  +      
Sbjct: 206 AGKSTIFNRLTNETTLQENKLFATLDPTTRKVRF----SGGFQALLTDTVGFIQDLPTTL 261

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSD 330
               + T  E  N D+++ + + ++   +                ++  + I  K D
Sbjct: 262 IAAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMD 318


>gi|47096921|ref|ZP_00234498.1| GTP-binding domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|284801681|ref|YP_003413546.1| hypothetical protein LM5578_1434 [Listeria monocytogenes 08-5578]
 gi|284994823|ref|YP_003416591.1| hypothetical protein LM5923_1387 [Listeria monocytogenes 08-5923]
 gi|47014681|gb|EAL05637.1| GTP-binding domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|284057243|gb|ADB68184.1| hypothetical protein LM5578_1434 [Listeria monocytogenes 08-5578]
 gi|284060290|gb|ADB71229.1| hypothetical protein LM5923_1387 [Listeria monocytogenes 08-5923]
          Length = 409

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 104/297 (35%), Gaps = 53/297 (17%)

Query: 82  EFHVHGGIA---VVNGILEELAKMPNLRLANPGEFSRRAFE-----------NGKIDLLE 127
           E H     A   V++ ++++L ++        G+    A             N ++   +
Sbjct: 29  ELHSLAKTANAEVMDELIQKLERVNQASFIGSGKLDELAALVEMHEADVVIFNSELSATQ 88

Query: 128 AESLADLISSE--TEMQRRL---SM--EGMSGELSSLYGQWIDKL-------THIRSFIE 173
             +++  + +      Q  L   +M  +   G+L   Y Q+   L         +     
Sbjct: 89  VRNISAAVEARIIDRTQLILDIFAMCAKSREGKLQVAYAQYKYLLPRLSGQGISLSKLGG 148

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG----YKIVILGHSN 229
                   E       + +   +  +K  + +H+ Q +   I R      ++  ++G++N
Sbjct: 149 GIGSRGPGESKLEMDKRHIREKMHDIKAQL-THVEQHRKRIIERRNTQSVFRFGLIGYTN 207

Query: 230 AGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           AGKS++FN L  +    +  +   +  TTR V        G+   ++DT G  +      
Sbjct: 208 AGKSTIFNRLTNETTLQENKLFATLDPTTRKVRF----SGGFQALLTDTVGFIQDLPTTL 263

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSD 330
               + T  E  N D+++ + + ++   +                ++  + I  K D
Sbjct: 264 IAAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMD 320


>gi|158520022|ref|YP_001527892.1| GTP-binding protein HSR1-related [Desulfococcus oleovorans Hxd3]
 gi|158508848|gb|ABW65815.1| GTP-binding protein HSR1-related [Desulfococcus oleovorans Hxd3]
          Length = 565

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 102/285 (35%), Gaps = 36/285 (12%)

Query: 58  GRILDKG-LLIVFPSPESFTGEDSAEFHVHGG---IAVVNGILE-------ELAKMPN-- 104
           G+  D+  L+ V  +P +  G    E         IAVV+ +L+                
Sbjct: 192 GQKSDRAILVSVTGAPRAAAGASLTELSALAASADIAVVDTVLQFRKKTDARFLLGRGKL 251

Query: 105 ---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSM-------EGMSGEL 154
                LA     +   F+  +++  +  S+ D +  +   + +L +       + M G+L
Sbjct: 252 GELAVLALQTGANLLVFDQ-ELNPSQIRSITDQVDIKVIDRTQLILDIFAQRAQSMEGKL 310

Query: 155 SSLYGQWIDKLTHIRSFIEA----------DLDFSEEEDVQNFSSKEVLNDILFLKNDIS 204
              + Q    L  + +   A                + ++     ++ L  +      I 
Sbjct: 311 QVAHAQLKYLLPRLVTKNTAMSRLTGGIGGRGPGETKLEINRRRVRDQLARLEKQLESIK 370

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
               Q K     R    I ILG++NAGKS+L N L+K  VA   D    T D  +  +  
Sbjct: 371 KQRRQQKARRDKRALPVISILGYTNAGKSTLLNTLSKSGVA-TADRLFMTLDPASRRIRF 429

Query: 265 E-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308
                V ++DT G  +          + T  E+E ADL + + + 
Sbjct: 430 PREMDVILTDTVGFIQNLPKELMVAFRATLEELERADLFIHVVDA 474


>gi|325571570|ref|ZP_08147070.1| GTP-binding protein HflX [Enterococcus casseliflavus ATCC 12755]
 gi|325156046|gb|EGC68242.1| GTP-binding protein HflX [Enterococcus casseliflavus ATCC 12755]
          Length = 420

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 99/248 (39%), Gaps = 20/248 (8%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L  L GQ  + ++ +   I        + +      +  +
Sbjct: 116 MRARSKEGKLQVELAQLDYLLPRLIGQGKN-MSRLGGGIGTRGPGETKLETDRRHIRNRI 174

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I     ++++H  + +        +++ ++G++NAGKS++ N L   D      +   
Sbjct: 175 TIIKRELKEVAAHRDRTRQKRKDSQVFQMGLIGYTNAGKSTILNILTSADTYEQDQLFA- 233

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D LT    + EG+ V I+DT G  +       +    T  E +N D +L + + +S++
Sbjct: 234 TLDPLTKRWRMPEGFEVTITDTVGFIQELPTQLIDAFHSTLEESQNMDFLLHVVDASSEE 293

Query: 313 EISFPK------------NIDFIFIGTKSDLYST----YTEEYDHLISSFTGEGLEELIN 356
            +   +             +  + +  K+D         T   + LIS+ + +G E L  
Sbjct: 294 RVQQEETVLKLMEELSLTQLPMLTVYNKADRIDADQFVPTLFPNVLISAKSTKGKERLTQ 353

Query: 357 KIKSILSN 364
            IK  L  
Sbjct: 354 AIKMELMQ 361


>gi|260893010|ref|YP_003239107.1| small GTP-binding protein [Ammonifex degensii KC4]
 gi|260865151|gb|ACX52257.1| small GTP-binding protein [Ammonifex degensii KC4]
          Length = 610

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 21/157 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            K++++G+ N GKS +F  L      I ++ PGTT +     LDL G  V+I D  G   
Sbjct: 1   MKVLLVGNPNVGKSVIFAQLTGT-RVISSNYPGTTVEYTKGYLDLNGEKVEIIDVPGTYS 59

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
            D   + E +      +   D+I+ + +  + +           + +  I      D   
Sbjct: 60  LDPSCKAEEV--AVSMLSEGDIIVNVVDATNLERNLYLTLELLERPVPVIIALNLWDEAQ 117

Query: 334 TYTEEYDHLI------------SSFTGEGLEELINKI 358
               E D               ++ +G GL+EL+ ++
Sbjct: 118 HKGIEIDVRRLEEILGVPVVPTAATSGRGLKELVRRL 154


>gi|182626284|ref|ZP_02954040.1| ferrous iron transport protein B [Clostridium perfringens D str.
           JGS1721]
 gi|177908382|gb|EDT70924.1| ferrous iron transport protein B [Clostridium perfringens D str.
           JGS1721]
          Length = 707

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 19/172 (11%)

Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264
           S +S+ K     +  Y + + G+ N GKS++FNAL   +     + PG T        + 
Sbjct: 11  SLLSKDKSRGNTKEDYVVALAGNPNVGKSTVFNALTGLNQ-HTGNWPGKTVAKAEGYYEF 69

Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------EI 314
           +   +KI D  G        E+E I R ++   + D+++++ +  S +          EI
Sbjct: 70  KDSTIKIVDLPGTYSLLSNSEEEEIARDYICFNDPDIVVVVADATSLERNLNLFIQISEI 129

Query: 315 SFPKNIDFIF--------IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358
           +    +            I    DL S          S+  G G+EEL   I
Sbjct: 130 TEKAILCVNLTDEAEKNNIKIDLDLLSKELNANLVSSSARNGVGIEELKEAI 181


>gi|327541274|gb|EGF27817.1| GTPase HflX [Rhodopirellula baltica WH47]
          Length = 459

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 95/256 (37%), Gaps = 28/256 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSH-ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
               +     I  LK ++ S  + + +      +   + ++G++NAGKS+L NAL    V
Sbjct: 167 EVDRRLAQKRIHDLKTELKSVELRRERQVAARSDSPTVSLVGYTNAGKSTLMNALTDAGV 226

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303
               D    T D  T    L  +  V +SDT G             K T  E   A+L+L
Sbjct: 227 M-AQDKLFATLDTRTRRWHLPEWGHVLLSDTVGFIRDLPHSLVASFKSTLEETRQAELLL 285

Query: 304 LLKEINSKK------------EISFPKNIDFIFIGTKSD------LYSTYTEEYD--HLI 343
            + + +S +            E    +  D + +  K D      + +   + Y     +
Sbjct: 286 HVADASSPQVFEQISAVYQVLEELGIEAKDTLLVLNKIDAITSPRVLNRVLDRYPNAIPV 345

Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403
           S+ +  GL+ L   +   LS +F  +   +  H   L              +  ++ G D
Sbjct: 346 SARSRSGLKPLAQAVGEALSREFLDVEIGVAHHDGKLLSFLSA-----TGKIESREFGND 400

Query: 404 IIAENLRLASVSLGKI 419
            +   +R+ + ++G +
Sbjct: 401 HVIVRVRMPASAMGTV 416


>gi|319953161|ref|YP_004164428.1| gtp-binding protein hflx [Cellulophaga algicola DSM 14237]
 gi|319421821|gb|ADV48930.1| GTP-binding protein HflX [Cellulophaga algicola DSM 14237]
          Length = 403

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 17/155 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
            +G  G ++R    + ++G++N GKS+L N ++K DV    +    T D     + +   
Sbjct: 192 QRGNRGALVR----VALVGYTNVGKSTLMNVVSKSDV-FAENKLFATLDTTVRKVVVGNL 246

Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------- 318
              +SDT G          E  K T  EV  ADL+L + +I+  +               
Sbjct: 247 PFLLSDTVGFIRKLPTQLVESFKSTLDEVREADLLLHVVDISHPQFEEHIASVNKILGEI 306

Query: 319 ---NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350
              +   I +  K D ++  T + D LI+  T E 
Sbjct: 307 GSGDKKTIMVFNKIDQFTHETIDDDDLITERTEEH 341


>gi|313124588|ref|YP_004034847.1| GTP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312281151|gb|ADQ61870.1| Putative GTP-binding protein [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 426

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 94/232 (40%), Gaps = 28/232 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALA-- 240
             + + +   I  +K+++     Q ++    RN     K+ ++G++NAGKS+  N L   
Sbjct: 168 EMNRRTIGKQISAIKHELKEISGQEEIKAARRNQSQLPKVALVGYTNAGKSTTMNGLLEA 227

Query: 241 ----KKDVAIVT-DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
                +D  ++  D+   T D     +DL+G+   +SDT G          +  K T  E
Sbjct: 228 FGAGNEDKQVMAKDMLFATLDTSVRRIDLDGFSFILSDTVGFVSKLPHKLVDSFKATLKE 287

Query: 296 VENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTY---TEEY 339
            ++ADL++ + +                  EI   K++  I    K+DL        E  
Sbjct: 288 AKDADLLINVVDAADPNMNQMIKTTLEVLDEIGV-KDLPMITAYNKADLTDRNYPQIEGG 346

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYL 390
           D L S+     ++ L   I + L + ++     +P    + L +L Q  R L
Sbjct: 347 DLLYSAVDPASIQALAKLITTRLFSNYQITDLRLPLTAGKDLAYLHQHSRVL 398


>gi|209544373|ref|YP_002276602.1| GTP-binding proten HflX [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532050|gb|ACI51987.1| GTP-binding proten HflX [Gluconacetobacter diazotrophicus PAl 5]
          Length = 450

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 81/238 (34%), Gaps = 22/238 (9%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE-IIRNGYKI 222
           +L                E       +++ + +  LK  + +    G       R+  ++
Sbjct: 173 RLRETSGGGGRQQGPGAGESTLALDRRKIRDRLAELKTQLDAVQRDGDQRRSARRDQLRV 232

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETD 281
            ++G++NAGKSSL  AL    V +V D    T D     L  E    + +SDT G  +  
Sbjct: 233 ALVGYTNAGKSSLMRALTGSQV-LVEDKLFATLDTTVRILQPETRPRILVSDTVGFIKQL 291

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKN---------IDFIFIGTKS 329
                   + T  E   A L+L + + +    + ++   +          +    +  K 
Sbjct: 292 PHDLVASFRSTLAEALEASLLLFVVDASDPTYESQLEVTRGVLREIGADTVPSRLVLNKM 351

Query: 330 DLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
           D                  ++S+ T   +  L + + +    +  +    +P  K+ L
Sbjct: 352 DRLDPAARAALRDKHPDAIMLSAHTPADVSALRDTLIAFFEAEMVEDTLVLPYAKQGL 409


>gi|57641911|ref|YP_184389.1| HflX-related GTP-binding protein [Thermococcus kodakarensis KOD1]
 gi|57160235|dbj|BAD86165.1| HflX-related GTP-binding protein [Thermococcus kodakarensis KOD1]
          Length = 442

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 18/166 (10%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAI 246
           K +   +  +++++    +  ++    R       + + G++NAGKS+L NALA ++V  
Sbjct: 153 KHIRYRMGKIRDELERVKADREVKRKKRENAGFVLVALAGYTNAGKSTLLNALADENV-E 211

Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306
             +   TT D  T    L    +  +DT G  +       E    T  E+  AD++LL+ 
Sbjct: 212 AKNQMFTTLDTTTRRFRLGTKRILATDTVGFIDGLPPFIVEAFHSTLEEIVKADIVLLVL 271

Query: 307 EINSKKEISFPK--------------NIDFIFIGTKSDLYSTYTEE 338
           + +        K                  I    K DL      E
Sbjct: 272 DSSEPWGEIRRKFLASLQVLRELKALEKPIIVALNKIDLIEEADAE 317


>gi|85705113|ref|ZP_01036213.1| GTP-binding protein Era [Roseovarius sp. 217]
 gi|85670435|gb|EAQ25296.1| GTP-binding protein Era [Roseovarius sp. 217]
          Length = 301

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 24/166 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGQSQLVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS-----FPKNIDFIFIG 326
           + +    +++  +   +    +AD+++LL E         + I        K        
Sbjct: 63  LFQPRRRLDRAMVAAAWGGAADADVVILLIEAHRGVTEGVERILDGLSGIAKGRKVALAI 122

Query: 327 TKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIK 359
            K D                 +  E   LIS+  G G+++L + + 
Sbjct: 123 NKIDRVQAQVLLALTKDMNERFAFEKTFLISAEKGHGVDDLRHWLA 168


>gi|84515164|ref|ZP_01002527.1| GTP-binding protein Era [Loktanella vestfoldensis SKA53]
 gi|84511323|gb|EAQ07777.1| GTP-binding protein Era [Loktanella vestfoldensis SKA53]
          Length = 305

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 24/206 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G+ +  
Sbjct: 11  VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMDGQAQLIFIDTPGLFKPR 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEI-----SFPKNIDFIFIGTKSD- 330
             +++  +   +    +AD+++L+ E         K I                  K D 
Sbjct: 71  RRLDRAMVAAAWGGAADADVVVLMIEAHRGMSEGVKAILANLPDRMGKTKVALAINKIDK 130

Query: 331 --------LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378
                   L     E +      +IS+  G G + L   +   +       P    +   
Sbjct: 131 VKSEGLLALTRDMNEAFAFAETFMISAERGHGCDALRKWLVDQVPEGPWLYPEDQIADLP 190

Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDI 404
                ++  R      L+ ++   ++
Sbjct: 191 MRMIAAEMTREKLTLRLH-QELPYEL 215


>gi|302669315|ref|YP_003832465.1| ferrous iron transport protein B FeoB2 [Butyrivibrio
           proteoclasticus B316]
 gi|302396979|gb|ADL35883.1| ferrous iron transport protein B FeoB2 [Butyrivibrio
           proteoclasticus B316]
          Length = 671

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I +LG  N+GKS+LFNAL       V + PG T +        +G    I+D  G     
Sbjct: 6   IALLGQPNSGKSTLFNALTGL-RQHVGNWPGKTVEKKEGSFSYKGMECAIADLPGSYSLT 64

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTY 335
              ++E I R ++    AD++ +L + +  +   F        ++    +   +D+ +  
Sbjct: 65  ANSDEELITREYISSGKADVVCILADSSQLERSLFMTADYAGIDVPSFLVLNMADVAADQ 124

Query: 336 TEEYDHLISSFT 347
            +  D       
Sbjct: 125 GKTIDAKAIEKK 136


>gi|254448866|ref|ZP_05062322.1| GTP-binding protein Era [gamma proteobacterium HTCC5015]
 gi|198261556|gb|EDY85845.1| GTP-binding protein Era [gamma proteobacterium HTCC5015]
          Length = 292

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 66/205 (32%), Gaps = 38/205 (18%)

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G  N GKS+L N L    ++I T  P TTR  +   +  +   +   DT G    +  
Sbjct: 1   MVGRPNVGKSTLMNRLIGVRLSIATHKPQTTRHQVLGVVTRDHTQMVFVDTPGYHLGEKR 60

Query: 284 VEKEGIKRT--------------FLEVENADLILLLKEINSKKEISFPKNIDFIFIG--T 327
                + R                  +  +D          K  ++  K  D   I    
Sbjct: 61  AINRYMNRAALGSLNDVDVVVFVVQAMRFSD--------EDKALLNRIKKTDLPVIAVVN 112

Query: 328 KSDLYSTYTEEYDHLI--------------SSFTGEGLEELINKIKSILSNKFKKLPFSI 373
           K D+     E    +               S+  G+G++ L  ++   L  +        
Sbjct: 113 KVDVLDDKNELLPFMQMLNEQHDFVSMLPISARKGQGVDALEGELTPHLPEQPHIFEEDD 172

Query: 374 PSHKRHLYHLSQTVRYLEMASLNEK 398
            + +   +  ++ +R     ++ ++
Sbjct: 173 FTDRNMRFLAAERIREQLFLNMQQE 197


>gi|123966232|ref|YP_001011313.1| GTPase SAR1 and related small G proteins [Prochlorococcus marinus
           str. MIT 9515]
 gi|123200598|gb|ABM72206.1| GTPase SAR1 and related small G proteins [Prochlorococcus marinus
           str. MIT 9515]
          Length = 496

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 108/265 (40%), Gaps = 22/265 (8%)

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI---SQGKLGEIIRNG-YKIVILGHSNA 230
           ++ F           + +      + N + S +    + KL E ++ G Y +++ G  ++
Sbjct: 66  NIPFKNNYGAAINILESIEEINKKISNKVESELLIYEKNKLTEQLKYGDYNVILFGAGSS 125

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRETDDIVEKEG 288
           GK+S+  AL K  +  ++   GTT+++ +  + +      + I DT G+ E     EK  
Sbjct: 126 GKTSIARALLKNLIGKISPTIGTTKNIASYKIRIPILKRNINIIDTPGLFEASIDGEKRE 185

Query: 289 IKRTFLEVENADLILLLKEIN-SKKEISFPKN-----IDFIFIGTKSDLYSTYTEEYDHL 342
            K T +E   +DLIL + + + +K E+   +         I +  K DL S         
Sbjct: 186 -KSTIIEASKSDLILFVLDQDINKFELYLIRELLELRKKIIIVLNKCDLRSEKQNNNIKE 244

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402
                    +  I+ +K+I SN              +L+   + +  L+       + G 
Sbjct: 245 NIISMTSSKKIKISVVKTIASNNLSPNHSLGSIDVSNLF--KEVIETLD-------ENGE 295

Query: 403 DIIAENLRLASVSLGKITGCVDVEQ 427
           +++A+N+      LG I+  V  EQ
Sbjct: 296 ELLADNILFRCNKLGLISKKVISEQ 320


>gi|125623110|ref|YP_001031593.1| GTP-binding protein hflX [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124491918|emb|CAL96839.1| GTP-binding protein hflX [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069857|gb|ADJ59257.1| GTP-binding protein hflX [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 414

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 18/216 (8%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-AIVT 248
           +  + +I      +       +        ++I ++G++NAGKSS+ NAL   D      
Sbjct: 170 RTRIENIDKALKKVEKTRENIRQKRSKSGIFRIGLIGYTNAGKSSIMNALIGLDKEQYEQ 229

Query: 249 DIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +    T D  T  + L E + V ++DT G  +       +  K T  E  N DL++ + +
Sbjct: 230 NELFATLDATTKAVQLVEDFTVSLTDTVGFIQNLPTELIKAFKSTLEESANVDLLIHVID 289

Query: 308 INSKK------------EISFPKNIDFIFIGTKSDLYST---YTEEYDHLISSFTGEGLE 352
            ++              E     NI  + +  K D+  +    T      +S  +  G++
Sbjct: 290 ASNPHHEIHEQTVLKIMEDLKLTNIPVLNVYNKMDIAPSDFLPTLSTSLQLSIKSENGVQ 349

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTV 387
            L   I   L   F+     +P  K   L  L ++ 
Sbjct: 350 WLKTAILEKLHELFEAFEIELPYEKAYQLPELRKSA 385


>gi|298386290|ref|ZP_06995846.1| ferrous iron transport protein B [Bacteroides sp. 1_1_14]
 gi|298260667|gb|EFI03535.1| ferrous iron transport protein B [Bacteroides sp. 1_1_14]
          Length = 828

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +     E L + + +K +    ++ GK     R    + ++G+ N+GK+SLFN  +    
Sbjct: 82  EKAVYHEGLPEDVSVKEEEMKRLALGK-----RRTINVALVGNPNSGKTSLFNLASGAHE 136

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
             V +  G T D      D EGY  +I D  G         +E   R  +  E  D+I+ 
Sbjct: 137 -HVGNYSGVTVDAKEGYFDFEGYHFRIVDLPGTYSLSAYTPEEIYVRRHIVDETPDVIIN 195

Query: 305 LKEINSKK 312
           + + ++ +
Sbjct: 196 VVDSSNLE 203


>gi|251788565|ref|YP_003003286.1| GTP-binding protein HSR1-related [Dickeya zeae Ech1591]
 gi|247537186|gb|ACT05807.1| GTP-binding protein HSR1-related [Dickeya zeae Ech1591]
          Length = 288

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + AGKSSL NAL   +V+ V+D+   TR+ L   L++    + + D  G+ E++
Sbjct: 39  IGIMGKTGAGKSSLCNALFAGEVSPVSDVAACTREPLRFRLNVGERCMTLVDLPGVGESE 98

Query: 282 --DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
             D       ++    +   DL+L L + + +  ++  ++     IG
Sbjct: 99  RRDTEYAAMYRQQLPHL---DLVLWLIKADDRA-LAVDEHFYHQVIG 141


>gi|237745517|ref|ZP_04575997.1| HflX GTP-binding protein [Oxalobacter formigenes HOxBLS]
 gi|229376868|gb|EEO26959.1| HflX GTP-binding protein [Oxalobacter formigenes HOxBLS]
          Length = 379

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 87/248 (35%), Gaps = 23/248 (9%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +   ++ L   W   L   +  I        + +       E +  +      +   
Sbjct: 119 LAQLQHLMTRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLIGERVRMLRTRLGKLQRQ 177

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
               +        + + ++G++NAGKS+LFNA+ K       D    T D  +  + LE 
Sbjct: 178 RETQRRSRNRNQVFSLSLVGYTNAGKSTLFNAMTKAG-TYAADQLFATLDTTSRRIYLES 236

Query: 267 YL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKE 313
              V +SDT G             + T  E  +ADL+L + +            +N+  E
Sbjct: 237 VGNVVVSDTVGFIRELPHQLVAAFRATLEETIHADLLLHVVDAANPMRNEQIDEVNTVLE 296

Query: 314 ISFPKNIDFIFIGTKSDLY--------STYTEEYDHLISSFTGEGLEELINKIKSILSNK 365
               +++  + I  K D            Y +     +S+ TGEGL+ L + I     ++
Sbjct: 297 EIGARDVPQLLIWNKIDAAGLKPALERDEYGKISRVFVSARTGEGLDLLRSAIAEYAKDQ 356

Query: 366 FKKLPFSI 373
                  +
Sbjct: 357 KISRSGDM 364


>gi|227878208|ref|ZP_03996182.1| GTP-binding protein HflX [Lactobacillus crispatus JV-V01]
 gi|256850497|ref|ZP_05555924.1| GTP-binding protein [Lactobacillus crispatus MV-1A-US]
 gi|227862239|gb|EEJ69784.1| GTP-binding protein HflX [Lactobacillus crispatus JV-V01]
 gi|256712702|gb|EEU27696.1| GTP-binding protein [Lactobacillus crispatus MV-1A-US]
          Length = 421

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 83/215 (38%), Gaps = 26/215 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
             + + +   I  +K ++ +   Q ++    RN     K+ ++G++NAGKS+  N L ++
Sbjct: 162 ELNRRTIGKQISAIKKELKAVAGQEEIKAARRNQSRIPKVALVGYTNAGKSTTMNGLLRE 221

Query: 243 -------DVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFL 294
                      V ++   T D     +DL+  +   +SDT G          E  K T  
Sbjct: 222 FSKEGAYKEVFVKNMLFATLDTSVRRIDLKDNFSFILSDTVGFISKLPHNLVESFKATLQ 281

Query: 295 EVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTY---TEEY 339
           E  +ADL++ + + +    +               K I  I    K+D         E  
Sbjct: 282 ETRDADLLINVVDASDPNMVQMIRTTQNVLDEIGVKEIPMITAYNKADKTDRNYPQIEGD 341

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D L S+   + ++ L N I   +   +KK    +P
Sbjct: 342 DILYSAIDPKSIKLLANLITKRVFANYKKFDLILP 376


>gi|330978949|gb|EGH78008.1| GTP-binding protein HflX [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 433

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 91/253 (35%), Gaps = 25/253 (9%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  L 
Sbjct: 115 RARTHEGKLQVELAQLEHMSTRLVRGW-PHLERQKGGIGLRGPGETQLETDRRLLRVRLR 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I      + S   Q + G    +   + ++G++NAGKS+LFN++   DV    D    T
Sbjct: 174 QIKGRLEKVRSQRDQARRGRRRADIPSVSLVGYTNAGKSTLFNSVTDSDV-FAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     L L+    + ++DT G          E  + T  E  N+DL+L + + +    
Sbjct: 233 LDPTLRRLQLDDLGPIVLADTVGFIRHLPHKLVEAFRATLEESSNSDLLLHVIDSHEPDR 292

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
           +S              + +  + +  K DL      +             +S+  G GL+
Sbjct: 293 MSQIEQVMAVLGEIGAEGLPILEVYNKLDLLEGVEPQIQRDADGKPQRVWVSARDGRGLD 352

Query: 353 ELINKIKSILSNK 365
            L   I  +L + 
Sbjct: 353 LLKQAIAELLGDD 365


>gi|328952826|ref|YP_004370160.1| ferrous iron transport protein B [Desulfobacca acetoxidans DSM
           11109]
 gi|328453150|gb|AEB08979.1| ferrous iron transport protein B [Desulfobacca acetoxidans DSM
           11109]
          Length = 731

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 11/173 (6%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + + G+ N GK++LFN L       V + PG T +     +    Y + I D  G   
Sbjct: 5   LTVALAGNPNVGKTALFNNLTGA-RQHVANWPGVTVEKKEGKVYFGDYEITIIDLPGTYS 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339
                 +E I R F+  E  D+++ + + ++ +        +        DL +      
Sbjct: 64  LSPFSLEEIIARNFIVDEKPDVVINVIDASNLE-------RNLFLSAQIIDLGAKMVFAL 116

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392
           + + ++ T  G++    ++  +        P     ++     +   +R  E 
Sbjct: 117 NMVDTAAT-RGIQIDQARLAEL--WGVPVAPTVANRNQGTKELIEAVIRTAEA 166


>gi|327461198|gb|EGF07531.1| GTP-binding protein HflX [Streptococcus sanguinis SK1057]
          Length = 412

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 98/266 (36%), Gaps = 30/266 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKAVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNCLTSKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T +++L G L V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKNINLSGQLNVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPHHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEG-----LEELINKI 358
            K            +I  + +  K+D    +T     + + S   +       + L+ ++
Sbjct: 296 EKTVLDIMKELDMLDIPRLTLYNKADKAEDFTPTLTPYSLISAKADNSRAVLQQVLLERM 355

Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLS 384
           K +      K+  +       L  ++
Sbjct: 356 KELFLPFTIKVESAKAYKIHDLEKVA 381


>gi|319955783|ref|YP_004167046.1| ferrous iron transport protein b [Nitratifractor salsuginis DSM
           16511]
 gi|319418187|gb|ADV45297.1| ferrous iron transport protein B [Nitratifractor salsuginis DSM
           16511]
          Length = 706

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 25/172 (14%)

Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEG---YL 268
           +++   K+V++G  N GKSSL NA+A   +  V +  G T DV  +     D +G   Y 
Sbjct: 1   MVKEKIKVVLVGQPNVGKSSLINAIAHAKL-HVGNFAGVTVDVSEVKTTFCDAQGCAEYE 59

Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDF 322
           + I D  G    +D   +E + + +L  E  DLI+ + +    +                
Sbjct: 60  IDIIDLPGTYSLNDYSMEEKVTKDYLLKEKYDLIVNVVDATHLQRNLLLTAELLELGKKM 119

Query: 323 IFIGTKSDLYSTYTEEYDHLI------------SSFTGEGLEELINKIKSIL 362
           +      D       + DH              S+ T EG+EEL   I  + 
Sbjct: 120 VVALNMIDEARQEGIQIDHQQLSTILGVPVVPVSAKTKEGIEELKKTIVEVY 171


>gi|255526381|ref|ZP_05393295.1| ferrous iron transport protein B [Clostridium carboxidivorans P7]
 gi|255509958|gb|EET86284.1| ferrous iron transport protein B [Clostridium carboxidivorans P7]
          Length = 680

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 19/156 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ N GK+SLFN L       V + PG T +     L  +   + + D  G   
Sbjct: 5   LVIALAGNPNCGKTSLFNELTGS-RQHVGNWPGVTVEKKEGKLKYKDRNIVVVDLPGTYS 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                E E + R F+  +  D+++ + + ++ +                I      D   
Sbjct: 64  LGAYSEDEKVARDFILKDKPDVVINVIDASNIERNLYLTMQLLETGAKVIIALNMMDEAE 123

Query: 334 TYTEEYDHLISSF------------TGEGLEELINK 357
               + D    S              G+G+EELI++
Sbjct: 124 NRNIQIDIKELSKILNIPAVPTVAPKGQGIEELISE 159


>gi|78184833|ref|YP_377268.1| hypothetical protein Syncc9902_1260 [Synechococcus sp. CC9902]
 gi|78169127|gb|ABB26224.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 529

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 100/238 (42%), Gaps = 26/238 (10%)

Query: 197 LFLKNDISSHISQGKL----GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
             L++DI+    Q +      E+ R    +V+ G  ++GK+SL  AL +K V  V    G
Sbjct: 104 ERLESDIARESLQAERDRVNEELQRGDLVVVVFGTGSSGKTSLIRALLQKMVGDVGAPMG 163

Query: 253 TTRDVLTIDLDLEG--YLVKISDTAGIRETDD---IVEKEGIKRTFLEVENADLILLLKE 307
            T++  +  L L+G    +++ DT GI E  D     E +  +R       ADL+L++ +
Sbjct: 164 LTKETRSYRLRLKGLNRGLQLVDTPGILEAGDDGLSREDQARRRAI----RADLLLVVVD 219

Query: 308 INSKK-EISFPK-----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361
            + +  E++  +         + +  K DL     E+    +      GL      + + 
Sbjct: 220 GDLRASELAVVRSIADLGKRLLLVLNKRDLRGVDEEKQLLQVLRSRCTGL------LSNA 273

Query: 362 LSNKFKKLPFSIPSH-KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418
                   P SIP   +R L      +  ++  ++  +  G ++IA+N+ L   +L  
Sbjct: 274 DVLACSAAPQSIPQPGRRPLQPKPDVMDLMQRLAVVLQAEGEELIADNILLQCRNLDS 331


>gi|304311327|ref|YP_003810925.1| hypothetical protein HDN1F_16900 [gamma proteobacterium HdN1]
 gi|301797060|emb|CBL45273.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 521

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 90/258 (34%), Gaps = 39/258 (15%)

Query: 76  TGEDSAEFHVHGGIAVVNG--------ILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127
           T     E  +   + ++          I E +     L L +     R     GK+    
Sbjct: 136 TKSPLLELTIPNALMIIERASREMRIEISEHIPLSHQLTLGDIVRVQRWQEFAGKL---- 191

Query: 128 AESLADLISSETEMQ-------RRLSMEGMSGELSSLYGQWI-----DKLTHIRSFIEAD 175
            E++  +  +  +         RR     + G  +     W+      K+ +    + + 
Sbjct: 192 -EAVYRVGRAVLDPSSMLFSEFRREMGNRIMGYGAERVQLWLLQEYVRKVGYYAIELYSG 250

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235
                 ED    ++     D   L   + + IS            +I++LG +NAGKSSL
Sbjct: 251 RLLLSNEDPTTTTTATSKKDHQ-LAQRVEALISAP-------EPLRIMVLGRNNAGKSSL 302

Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
            NAL  +  A    +P TT +++   L+ EG    +     I +T      +  +R    
Sbjct: 303 INALFGEVKAPTDTLPSTTDEIIPYQLEREGGTAAL-----IFDTPGCDNPQLSERALKT 357

Query: 296 -VENADLILLLKEINSKK 312
            V +ADLIL +   N   
Sbjct: 358 CVLSADLILWVTPANRPD 375


>gi|159041871|ref|YP_001541123.1| small GTP-binding protein [Caldivirga maquilingensis IC-167]
 gi|157920706|gb|ABW02133.1| small GTP-binding protein [Caldivirga maquilingensis IC-167]
          Length = 355

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 34/216 (15%)

Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY--------KIVILGH 227
           + +++++D    + +  L+ I+ L ND+   +   K   I  +           IVI G 
Sbjct: 115 IKYAQDKDEIIKARRMYLSRIIDLINDLEPELRTLKEAAIKISRLPSVSVEKPTIVISGM 174

Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEK 286
            N GKSSL  A        + D P TT+ ++   + + G Y V++ DT G+ +       
Sbjct: 175 PNTGKSSLV-ACVSTKKPEIADYPFTTKQIIIGHVKVYGMYAVQVIDTPGLLDRPLSERN 233

Query: 287 EGIKRTFLEVEN-ADLILLLKE------------INSKKEISFPKNIDFIFIGTKSDLYS 333
               +  L + + AD I+ + +            +N  KEIS     D I +  K DL +
Sbjct: 234 RIELQAILALRHLADSIVFMIDPTQHSGYALNQQLNLLKEISQSFKADIIAVINKVDLAT 293

Query: 334 TYTEEYDHL-----------ISSFTGEGLEELINKI 358
               +                S+    G  ELI+++
Sbjct: 294 EEEVKVVEESLRDLGYPYRLTSALKCTGTRELIDEL 329


>gi|300811236|ref|ZP_07091742.1| GTP-binding protein HflX [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497794|gb|EFK32810.1| GTP-binding protein HflX [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 426

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 94/232 (40%), Gaps = 28/232 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAK- 241
             + + +   I  +K+++     Q ++    RN     K+ ++G++NAGKS+  N L   
Sbjct: 168 EMNRRTIGKQISAIKHELKEISGQEEIKAARRNQSQLPKVALVGYTNAGKSTTMNGLLNA 227

Query: 242 -----KDVAIVT-DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
                +D  ++  D+   T D     +DL+G+   +SDT G          +  K T  E
Sbjct: 228 FGADNEDKQVMAKDMLFATLDTSVRRIDLDGFSFILSDTVGFVSKLPHKLVDSFKATLQE 287

Query: 296 VENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTY---TEEY 339
            ++ADL++ + +                  EI   K++  I    K+DL        E  
Sbjct: 288 AKDADLLINVVDAADPNMNQMIKTTLEVLDEIGV-KDLPMITAYNKADLTDRNYPQIEGG 346

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYL 390
           D L S+     ++ L   I + L + ++     +P    + L +L Q  R L
Sbjct: 347 DLLYSAVDPASIQALAKLITTRLFSNYQITDLRLPLTAGKDLAYLHQHSRVL 398


>gi|238918369|ref|YP_002931883.1| GTPase HflX [Edwardsiella ictaluri 93-146]
 gi|238867937|gb|ACR67648.1| GTP-binding protein HflX, putative [Edwardsiella ictaluri 93-146]
          Length = 426

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 92/279 (32%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ ++
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDRIH 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+   +      + ++G++NAGKS+LFN L    V    D    T
Sbjct: 173 LILGRLEKVEKQREQGRRARVRAEIPTVSLVGYTNAGKSTLFNTLTSATV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     +++       ++DT G             K T LE   A L+L + + +  + 
Sbjct: 232 LDPTLRRVEVNDVGPTVLADTVGFIRHLPHDLVAAFKATLLETRQASLLLHVVDASDARV 291

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                             I  + +  K D+   +    D           +S+    G++
Sbjct: 292 DENIDAVNTVLADIGADEIPVLLVMNKIDMLQDFVPRIDRDEENRPLRVWVSAQQASGMD 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            L   +   L  +       +P      R  ++  Q + 
Sbjct: 352 LLFQALSERLGGEIASYTLRLPPAAGRLRSRFYQLQAIE 390


>gi|257064468|ref|YP_003144140.1| small GTP-binding protein domain protein [Slackia
           heliotrinireducens DSM 20476]
 gi|256792121|gb|ACV22791.1| small GTP-binding protein domain protein [Slackia
           heliotrinireducens DSM 20476]
          Length = 653

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 4/109 (3%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + +LG  N+GKS+LFN L       V + PG T +         G    + D  G   
Sbjct: 5   LSLALLGQPNSGKSTLFNGLTGSHQK-VGNWPGKTVEKKLGTCTRSGTTYTVCDLPGAYS 63

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK 328
              + ++E I + ++E   AD++ ++ + +   ++S    +   F+GTK
Sbjct: 64  LSAMSDEEQITQAYIESGEADVVCVMVDAS---QLSRSLYMLADFVGTK 109


>gi|255598157|ref|XP_002536940.1| Ferrous iron transport protein B, putative [Ricinus communis]
 gi|223518039|gb|EEF25443.1| Ferrous iron transport protein B, putative [Ricinus communis]
          Length = 370

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 2/98 (2%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ +LG  N GKS+LFN L+    A V + PG T D+++  + L G++ ++ D  G+ + 
Sbjct: 3   RVALLGMPNTGKSTLFNRLSGAS-ARVGNWPGITVDLMSAKILLGGHIAELVDLPGLYDL 61

Query: 281 DDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFP 317
               + E + R FL     DL+L +L      +++S  
Sbjct: 62  HGFSDDEHVVRHFLSHHAIDLVLIILNSAQIDRQLSLA 99


>gi|91775941|ref|YP_545697.1| small GTP-binding protein domain-containing protein
           [Methylobacillus flagellatus KT]
 gi|91709928|gb|ABE49856.1| GTP-binding protein HflX [Methylobacillus flagellatus KT]
          Length = 375

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 80/250 (32%), Gaps = 20/250 (8%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +  L +   E + ++ +  +    + L   W                   + ++     +
Sbjct: 110 IFALRAQSHEGKLQVELAQLEHLSTRLVRGWTHLERQKGGIGVRGGPGETQLELDRRMLR 169

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             +  +      +       +          + ++G++NAGKS+LFN L +  V     +
Sbjct: 170 IRVKQLREKLAKLKQQRGMQRRARRRSQVLSVSLVGYTNAGKSTLFNRLTQSGVYAADQL 229

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T           +G  V +SDT G  +       E    T  E   ADL+L + ++ S
Sbjct: 230 FATLDTTSRKLYIPDGGPVVMSDTVGFIKHLPHALVEAFGATLEEAVQADLLLHIVDVAS 289

Query: 311 KKEISF------------PKNIDFIFIGTKSDLY--------STYTEEYDHLISSFTGEG 350
                              +++  + +  + D            Y       +S+ TGEG
Sbjct: 290 DSRDEQVEQVNLVLSEIGAQDVPQVLVLNQIDRVGIPPGLDRDEYGRISKVRVSAKTGEG 349

Query: 351 LEELINKIKS 360
           L+ L   +  
Sbjct: 350 LDLLRQALLE 359


>gi|77412836|ref|ZP_00789041.1| GTP-binding protein HflX [Streptococcus agalactiae 515]
 gi|77161132|gb|EAO72238.1| GTP-binding protein HflX [Streptococcus agalactiae 515]
          Length = 412

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 94/260 (36%), Gaps = 26/260 (10%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYMLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSIRHQISDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  +    +   +    +KI ++G++NAGKS++ N L   D     +    T D 
Sbjct: 177 RQLKIVEKNRETVRERRVDSTTFKIGLIGYTNAGKSTIMNVLT-DDKQYEANELFATLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L+  + V ++DT G  +          K T  E  + DL+L + + +       
Sbjct: 236 TTKQIYLQNQFQVTLTDTVGFIQDLPTELVAAFKSTLEESRHVDLLLHVIDASDPNHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIKSILS 363
            K            +I  + I  K D+        + ++  +   +G ++L+ ++  +  
Sbjct: 296 EKVVMEILKDLDMIDIPRLAIYNKMDVTEQLNATTFPNVRIAAKKQGSKDLLRRLI-VDE 354

Query: 364 NKFKKLPFSIPSHKRHLYHL 383
            +     FSI  H+   Y L
Sbjct: 355 IRHIFDEFSIRVHQNQAYKL 374


>gi|290474871|ref|YP_003467751.1| putative CP4-6 prophage; GTP-binding factor [Xenorhabdus bovienii
           SS-2004]
 gi|289174184|emb|CBJ80973.1| putative CP4-6 prophage; GTP-binding factor [Xenorhabdus bovienii
           SS-2004]
          Length = 291

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G + AGKSSL NAL + +V  ++D+   TRDVL   L    + + + D  G+ E++
Sbjct: 39  IGIMGKTGAGKSSLCNALFQGEVTPISDVHACTRDVLRFRLRKGEHSLILIDLPGVGESE 98

Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSKK 312
               E E + R    +   DLIL + + + + 
Sbjct: 99  QRDKEYESLYRNI--LPELDLILWVIKADDRA 128


>gi|256844098|ref|ZP_05549585.1| GTP-binding protein HflX [Lactobacillus crispatus 125-2-CHN]
 gi|293380510|ref|ZP_06626574.1| GTP-binding protein HflX [Lactobacillus crispatus 214-1]
 gi|256614003|gb|EEU19205.1| GTP-binding protein HflX [Lactobacillus crispatus 125-2-CHN]
 gi|290922944|gb|EFD99882.1| GTP-binding protein HflX [Lactobacillus crispatus 214-1]
          Length = 421

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 83/215 (38%), Gaps = 26/215 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
             + + +   I  +K ++ +   Q ++    RN     K+ ++G++NAGKS+  N L ++
Sbjct: 162 ELNRRTIGKQISAIKKELKAVAGQEEIKAARRNQSRIPKVALVGYTNAGKSTTMNGLLRE 221

Query: 243 -------DVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFL 294
                      V ++   T D     +DL+  +   +SDT G          E  K T  
Sbjct: 222 FSKEGADKEVFVKNMLFATLDTSVRRIDLKDNFSFILSDTVGFISKLPHNLVESFKATLQ 281

Query: 295 EVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTY---TEEY 339
           E  +ADL++ + + +    +               K I  I    K+D         E  
Sbjct: 282 ETRDADLLINVVDASDPNMVQMIRTTQNVLDEIGVKEIPMITAYNKADKTDRNYPQIEGD 341

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D L S+   + ++ L N I   +   +KK    +P
Sbjct: 342 DILYSAIDPKSIKLLANLITKRVFANYKKFDLILP 376


>gi|147902718|ref|NP_001087175.1| putative GTP-binding protein 6 [Xenopus laevis]
 gi|82182198|sp|Q6DCC6|GTPB6_XENLA RecName: Full=Putative GTP-binding protein 6
 gi|50418397|gb|AAH78122.1| MGC83645 protein [Xenopus laevis]
          Length = 527

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 84/212 (39%), Gaps = 18/212 (8%)

Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
           +VQ    KE    I +    +    +  +     R    I ILG++N+GK++L  AL   
Sbjct: 269 EVQQRLLKEREIKIKYALEKVKKKRNLLRTQRRRREFPIISILGYTNSGKTTLIKALTGD 328

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
           +     D    T DV +    L  +  V   DT G          E    T  +V ++DL
Sbjct: 329 EGLQPRDQLFATLDVTSHAGLLPCHMPVIYVDTIGFLSQLPHNLIESFSATLEDVVHSDL 388

Query: 302 ILLLKEINSKKE-------ISFPKNIDFIF--------IGTKSDLYS--TYTEEYDHLIS 344
           ++ +++I+  +        +S  KN+            +  K DL      TE+    +S
Sbjct: 389 LIHVRDISHPETTKQKASVLSVLKNLGLPQQLLDTMIEVQNKIDLIDMPENTEDSVLSVS 448

Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376
           +  G GLE+L  ++++ +     +   +I  +
Sbjct: 449 ALHGHGLEDLKQQVETAVMKSTGRNVVTIKVN 480


>gi|296284134|ref|ZP_06862132.1| GTPase [Citromicrobium bathyomarinum JL354]
          Length = 440

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 104/304 (34%), Gaps = 42/304 (13%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E + ++ +  +  + S L   W   L   R          E +       + +   
Sbjct: 115 AATAEGRLQVELAHLDYQASRLVRSWTH-LERQRGGYGFLGGPGETQI--EADRRMIRTR 171

Query: 196 ILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  L+ D+        L    R       I ++G++NAGKS++FN L   DV    D+  
Sbjct: 172 MARLRRDLEQVKKTRALHRERRTRAPWPVIALVGYTNAGKSTIFNRLTGADVM-AEDLLF 230

Query: 253 TTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D     + L       +SDT G             + T  EV NADLIL +++I + 
Sbjct: 231 ATLDPTMRAISLPAVEKAILSDTVGFISDLPTQLVAAFRATLEEVTNADLILHVRDIANP 290

Query: 312 KEISFP-----------------------KNIDFIFIGTKSDLYSTYTEE---------- 338
              +                          +I  + +  K DL +    E          
Sbjct: 291 ASAAQKTQVLEVLRGLGVVSGGEEGEEPVSSIPMLEVWNKWDLLADDAREDLAARAAEDD 350

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLEMASLNE 397
               +S+ TG  ++ L  +I   L+ +     F +P+   R +  L      LE   L  
Sbjct: 351 TVVPLSAETGFNMDALETRIGDALTREASVCEFVLPTSAGREIAWLHAHGDVLEEEELPA 410

Query: 398 KDCG 401
            + G
Sbjct: 411 GEGG 414


>gi|255030113|ref|ZP_05302064.1| hypothetical protein LmonL_15401 [Listeria monocytogenes LO28]
          Length = 389

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 117/336 (34%), Gaps = 54/336 (16%)

Query: 82  EFHVHGGIA---VVNGILEELAKMPNLRLANPGEFSRRAFE-----------NGKIDLLE 127
           E H     A   V++ ++++L ++        G+    A             N ++   +
Sbjct: 9   ELHSLAKTANAEVMDELIQKLERVNQASFIGSGKLDELAALVEMHEADVVIFNSELSATQ 68

Query: 128 AESLADLISSE--TEMQRRL---SM--EGMSGELSSLYGQWIDKL-------THIRSFIE 173
             +++  + +      Q  L   +M  +   G+L   Y Q+   L         +     
Sbjct: 69  VRNISAAVEARIIDRTQLILDIFAMCAKSREGKLQVAYAQYKYLLPRLSGQGISLSKLGG 128

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG----YKIVILGHSN 229
                   E       + +   +  +K  + +H+ Q +   I R      ++  ++G++N
Sbjct: 129 GIGSRGPGESKLEMDKRHIREKMHDIKAQL-THVEQHRKRIIERRNTQSVFRFGLIGYTN 187

Query: 230 AGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           AGKS++FN L  +    +  +   +  TTR V        G+   ++DT G  +      
Sbjct: 188 AGKSTIFNRLTNETTLQENKLFATLDPTTRKVRF----SGGFQTLLTDTVGFIQDLPTTL 243

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYS 333
               + T  E  N D+++ + + ++   +                ++  + I  K D ++
Sbjct: 244 IAAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMD-HA 302

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             T   D   S       +E  + IK  +    +K 
Sbjct: 303 PATFVPDQPESLLISALDQEAPDTIKQRMIQLIEKN 338


>gi|328946461|gb|EGG40601.1| GTP-binding protein HflX [Streptococcus sanguinis SK1087]
          Length = 412

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 88/235 (37%), Gaps = 25/235 (10%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKAVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNCLTSKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T +++L G L V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKNINLSGQLNVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPHHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKI 358
            K            +I  + +  K+D    +T     + + S        L+ ++
Sbjct: 296 EKTVLDIMKELDMLDIPRLTLYNKADKAEHFTPTLTPYSLISAKAHNSRALLQQV 350


>gi|328952073|ref|YP_004369407.1| ferrous iron transport protein B [Desulfobacca acetoxidans DSM
           11109]
 gi|328452397|gb|AEB08226.1| ferrous iron transport protein B [Desulfobacca acetoxidans DSM
           11109]
          Length = 841

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 19/190 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ NAGKS +FN +       V + PG T +            +++ D  G   
Sbjct: 4   VTIALAGNPNAGKSCIFNYITGA-RQHVGNYPGVTVEKKEGLCTCGELQIQVVDLPGTYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                  E + R ++  E  D+I+ + + ++ +             +  +     SD+  
Sbjct: 63  LTAYSIDEVVARNYILEEKPDVIVNVADASNLERNLYLTTQLRELGVPMVLALNMSDVAR 122

Query: 334 TYTEEYDHLISSF------------TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
               E D    S              GEG+ EL++++ ++ SN      F +   +    
Sbjct: 123 NQGIEIDCQAISKVLGIPVVPTIGHKGEGIRELLDEVVTLASNGHHPASFRVEYGRDLEP 182

Query: 382 HLSQTVRYLE 391
            L+   + +E
Sbjct: 183 ELAAIQQVIE 192


>gi|313609026|gb|EFR84759.1| GTP-binding protein HflX [Listeria monocytogenes FSL F2-208]
          Length = 350

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 87/240 (36%), Gaps = 22/240 (9%)

Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLT 166
           A       +A E   ID  +       + ++++    +++       L          L+
Sbjct: 27  ATQVRNISKAVEARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYK-YLLPRLSGQGVSLS 85

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
            +   I +      + ++     +E ++DI      +  H  +       ++ ++  ++G
Sbjct: 86  KLGGGIGSRGPGESKLEMDKRHIREKMHDIKAQLTHVEQHRKRIIERRNTQSVFRFGLIG 145

Query: 227 HSNAGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282
           ++NAGKS++FN L  +    +  +   +  TTR +        G+   ++DT G  +   
Sbjct: 146 YTNAGKSTIFNHLTNETTLQEDKLFATLDPTTRKIRF----SGGFQALLTDTVGFIQDLP 201

Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSD 330
                  + T  E  N D+++ + + ++   +                ++  + I  K D
Sbjct: 202 TTLIAAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMD 261


>gi|283853370|ref|ZP_06370617.1| GTP-binding proten HflX [Desulfovibrio sp. FW1012B]
 gi|283571238|gb|EFC19251.1| GTP-binding proten HflX [Desulfovibrio sp. FW1012B]
          Length = 579

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 21/171 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280
           + ++G++NAGKS+L N L    V +  +    T D  +  L       + ++DT G    
Sbjct: 394 VSLVGYTNAGKSTLLNTLTGSAV-LAENRLFATLDPTSRRLRFPSDREIILTDTVGFIRE 452

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFIFIGTK 328
                KE  + T  E+E ADL++ + + +  +            +     +I  + +  K
Sbjct: 453 LPKELKEAFRATLEELEAADLLVAVADASHPEVDGQVAAVADILQEMELGDIPRLLVLNK 512

Query: 329 S-----DLYSTYTEEYD--HLISSFTGEGLEELINKIKSILSNKFKKLPFS 372
                 DL       +     +S+ T +GL  L + I   +   F    F 
Sbjct: 513 WDAVPEDLRGPLKNAFPDALTLSARTRDGLSTLTDAILDRVRPGFGVRDFG 563


>gi|16803336|ref|NP_464821.1| hypothetical protein lmo1296 [Listeria monocytogenes EGD-e]
 gi|224501759|ref|ZP_03670066.1| hypothetical protein LmonFR_04472 [Listeria monocytogenes FSL
           R2-561]
 gi|16410712|emb|CAC99374.1| lmo1296 [Listeria monocytogenes EGD-e]
          Length = 407

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 117/336 (34%), Gaps = 54/336 (16%)

Query: 82  EFHVHGGIA---VVNGILEELAKMPNLRLANPGEFSRRAFE-----------NGKIDLLE 127
           E H     A   V++ ++++L ++        G+    A             N ++   +
Sbjct: 27  ELHSLAKTANAEVMDELIQKLERVNQASFIGSGKLDELAALVEMHEADVVIFNSELSATQ 86

Query: 128 AESLADLISSE--TEMQRRL---SM--EGMSGELSSLYGQWIDKL-------THIRSFIE 173
             +++  + +      Q  L   +M  +   G+L   Y Q+   L         +     
Sbjct: 87  VRNISAAVEARIIDRTQLILDIFAMCAKSREGKLQVAYAQYKYLLPRLSGQGISLSKLGG 146

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG----YKIVILGHSN 229
                   E       + +   +  +K  + +H+ Q +   I R      ++  ++G++N
Sbjct: 147 GIGSRGPGESKLEMDKRHIREKMHDIKAQL-THVEQHRKRIIERRNTQSVFRFGLIGYTN 205

Query: 230 AGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285
           AGKS++FN L  +    +  +   +  TTR V        G+   ++DT G  +      
Sbjct: 206 AGKSTIFNRLTNETTLQENKLFATLDPTTRKVRF----SGGFQTLLTDTVGFIQDLPTTL 261

Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYS 333
               + T  E  N D+++ + + ++   +                ++  + I  K D ++
Sbjct: 262 IAAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMD-HA 320

Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
             T   D   S       +E  + IK  +    +K 
Sbjct: 321 PATFVPDQPESLLISALDQEAPDTIKQRMIQLIEKN 356


>gi|300919536|ref|ZP_07136034.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300413430|gb|EFJ96740.1| conserved hypothetical protein [Escherichia coli MS 115-1]
          Length = 287

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           I I+G S AGKSSL NAL   +V+ V+D+   TR+ L   L +    + + D  G+ E+ 
Sbjct: 39  IGIMGKSGAGKSSLCNALFASEVSPVSDVAACTREPLRFRLQVGDCYMTLMDLPGVGESG 98

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326
              + E       ++   DL+L L + + +  ++  ++     IG
Sbjct: 99  -TRDTEYAALYREQLSRLDLVLWLIKADDRA-LAVDEHFYHQVIG 141


>gi|257865167|ref|ZP_05644820.1| GTP-binding protein [Enterococcus casseliflavus EC30]
 gi|257871491|ref|ZP_05651144.1| GTP-binding protein [Enterococcus casseliflavus EC10]
 gi|257874789|ref|ZP_05654442.1| GTP-binding protein [Enterococcus casseliflavus EC20]
 gi|257799101|gb|EEV28153.1| GTP-binding protein [Enterococcus casseliflavus EC30]
 gi|257805655|gb|EEV34477.1| GTP-binding protein [Enterococcus casseliflavus EC10]
 gi|257808955|gb|EEV37775.1| GTP-binding protein [Enterococcus casseliflavus EC20]
          Length = 414

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 99/248 (39%), Gaps = 20/248 (8%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + ++    ++ +  +   L  L GQ  + ++ +   I        + +      +  +
Sbjct: 110 MRARSKEGKLQVELAQLDYLLPRLIGQGKN-MSRLGGGIGTRGPGETKLETDRRHIRNRI 168

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
             I     ++++H  + +        +++ ++G++NAGKS++ N L   D      +   
Sbjct: 169 TIIKRELKEVAAHRDRTRQKRKDSQVFQMGLIGYTNAGKSTILNILTSADTYEQDQLFA- 227

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D LT    + EG+ V I+DT G  +       +    T  E +N D +L + + +S++
Sbjct: 228 TLDPLTKRWRMPEGFEVTITDTVGFIQELPTQLIDAFHSTLEESQNMDFLLHVVDASSEE 287

Query: 313 EISFPK------------NIDFIFIGTKSDLYST----YTEEYDHLISSFTGEGLEELIN 356
            +   +             +  + +  K+D         T   + LIS+ + +G E L  
Sbjct: 288 RVQQEETVLKLMEELSLTQLPMLTVYNKADRIDADQFVPTLFPNVLISAKSTKGKERLTQ 347

Query: 357 KIKSILSN 364
            IK  L  
Sbjct: 348 AIKMELMQ 355


>gi|298675659|ref|YP_003727409.1| nucleolar GTP-binding-1 domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298288647|gb|ADI74613.1| Nucleolar GTP-binding-1 domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 328

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 82/191 (42%), Gaps = 17/191 (8%)

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
           + ++  L   N+  + +   KL ++  +   IV+ G+ N GKSS   ALA K    V   
Sbjct: 134 KSIDKDLKFLNEARNTLR--KLPDVDVDAPTIVVAGYPNTGKSSFV-ALATKARPEVAIY 190

Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA-DLILLLKEIN 309
           P TT+ +       +    ++ DT G+ +       +   +    +++   ++L L + +
Sbjct: 191 PFTTKGISIGHFTRDNIRYQVIDTPGLLDRPMSDRNDIELQAITALKHLGSVLLYLVDAS 250

Query: 310 SK------------KEISFPKNIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELIN 356
                         +EI    ++    +  KSDL      ++ D  +S+ T EG+EE++N
Sbjct: 251 ETCGYTVDDQKRLYEEIKQQFDLPMFAVSNKSDLPEFQELDFVDMEMSTVTSEGVEEVVN 310

Query: 357 KIKSILSNKFK 367
            +  ++  K +
Sbjct: 311 NLVDMIGAKQE 321


>gi|284161283|ref|YP_003399906.1| small GTP-binding protein [Archaeoglobus profundus DSM 5631]
 gi|284011280|gb|ADB57233.1| small GTP-binding protein [Archaeoglobus profundus DSM 5631]
          Length = 354

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 6/159 (3%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI---SQGKLGEIIRNG- 219
            +      +E ++  +            +   +  LK ++       S+     + + G 
Sbjct: 2   DIIQEIKRLEEEIKKTPYNKATEHHIGRLKAKLARLKEELEKQRQKKSKAPAFSLRKEGD 61

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G  + GKS+L NAL     + V D   TT   +   L+ +G  ++I D  G+ E
Sbjct: 62  ASVFLVGFPSVGKSTLLNALTNA-KSEVGDYDFTTLKPVPGMLEYKGAKIQIVDVPGLIE 120

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318
                +  G +     + NADLI+++ ++ +   I   K
Sbjct: 121 GASKGKGRGRE-VLSFIRNADLIVIVVDVFTLHNIDIIK 158


>gi|270296348|ref|ZP_06202548.1| ferrous iron transporter B [Bacteroides sp. D20]
 gi|270273752|gb|EFA19614.1| ferrous iron transporter B [Bacteroides sp. D20]
          Length = 823

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 30/220 (13%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
           ++  I S  EA     + +  +       L +           + Q  LG+  R    + 
Sbjct: 67  EMIEIISEQEAKEQAVQPDYHEGLGENMHLGEDE---------LKQLALGK--RRTINVA 115

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G+ N GK+SLFN  +      V +  G T D      D +GY  +I D  G       
Sbjct: 116 LVGNPNCGKTSLFNIASGSHEH-VGNYSGVTVDAKEGYFDFQGYHFRIVDLPGTYSLSAY 174

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTE 337
             +E   R  +  E  D+I+ + + ++ +            N+  +      D       
Sbjct: 175 SPEEIYVRQHIINETPDIIINVVDSSNLERNLYLTTQLIDMNVRMVIALNMYDELEASGN 234

Query: 338 EYDH------------LISSFTGEGLEELINKIKSILSNK 365
             D+               S +G+G+E+L + I +I    
Sbjct: 235 TLDYVKLSQLFGVPMLPTVSRSGKGIEQLFHVIINIYEGG 274


>gi|319936541|ref|ZP_08010955.1| ferrous iron transporter B [Coprobacillus sp. 29_1]
 gi|319808339|gb|EFW04899.1| ferrous iron transporter B [Coprobacillus sp. 29_1]
          Length = 709

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 69/170 (40%), Gaps = 20/170 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ + G+ N+GK++LFNAL   +   V + PG T +            +KI+D  GI  
Sbjct: 3   IQVALAGNPNSGKTTLFNALTGANQ-FVGNWPGVTVEKKEGKYK-GDKEIKITDLPGIYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                 +E + R +L  E  D+IL + + ++ +             I  +      D+  
Sbjct: 61  LSPYTLEEVVSREYLLNEKVDVILNIVDGSNLERNLYLTTQLLELGIPVVVAINMLDVIE 120

Query: 334 TYTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPF 371
              ++ ++             IS+   +G++E++ K+K      F+    
Sbjct: 121 KRGDKVNYVQLSKELGCPVMPISALKNKGIDEVMAKVKESAHRSFEAKNI 170


>gi|258514915|ref|YP_003191137.1| ferrous iron transport protein B [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778620|gb|ACV62514.1| ferrous iron transport protein B [Desulfotomaculum acetoxidans DSM
           771]
          Length = 631

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 39/243 (16%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             I + G+ N GKS++FNAL      I  + PG T D     L      + I D  G   
Sbjct: 4   LNIALAGNPNTGKSTIFNALTGARQHI-GNWPGVTVDKKMGQLTRGKKKINIIDLPGTYS 62

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------EISFPKNIDFIFIGTKS 329
                 +E I + +L  E  DL++ + + ++ +          E+  P  ++   +    
Sbjct: 63  LSAYSLEEKIVKEYLLGEKPDLVVNVVDASNIERNLYLTVQLLEMGIPTIVNLNMMDEAK 122

Query: 330 --------DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                   D+   Y         + +  GL++LIN + S      +    S+        
Sbjct: 123 SKGYEINLDVLGKYLGAKVISSVATSKNGLQQLINSLDSPNMAMPEVAGSSL-------- 174

Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLA-SVSLGK------ITGCVDV--EQLLDII 432
            L + ++ +     +EKD   +++ E +  A    + +      I     V     LD I
Sbjct: 175 -LDEYLKQIANIRKSEKDS--ELMEEEIISARYDFINRVLEKSLIINEAVVSWHDRLDNI 231

Query: 433 FSK 435
           F+ 
Sbjct: 232 FTN 234


>gi|224826455|ref|ZP_03699557.1| GTP-binding proten HflX [Lutiella nitroferrum 2002]
 gi|224601556|gb|EEG07737.1| GTP-binding proten HflX [Lutiella nitroferrum 2002]
          Length = 378

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 69/186 (37%), Gaps = 24/186 (12%)

Query: 200 KNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258
              +       + G  +RNG   + I+G++NAGKS+LFNAL K   +   D    T D  
Sbjct: 178 LEQVQKQRKTQRRGR-LRNGIASVSIVGYTNAGKSTLFNALTKA-KSYAADQLFATLDTT 235

Query: 259 TIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE---------- 307
           +  L L     + +SDT G             + T  E   ADL+L + +          
Sbjct: 236 SRKLYLNEQASIVVSDTVGFIRDLPHTLVAAFRATLEETVQADLLLHVVDSANPMRDMQI 295

Query: 308 --INSKKEISFPKNIDFIFIGTKSDLYSTYTE--------EYDHLISSFTGEGLEELINK 357
             +N   E      I  + +  K DL                   +S+ TG+GLE L   
Sbjct: 296 EEVNRVLEEIGADEIPQLIVWNKGDLRGLEPLIERDADGVPQAVRVSALTGDGLELLREA 355

Query: 358 IKSILS 363
           +   + 
Sbjct: 356 LAERVQ 361


>gi|258647244|ref|ZP_05734713.1| ferrous iron transport protein B [Prevotella tannerae ATCC 51259]
 gi|260852890|gb|EEX72759.1| ferrous iron transport protein B [Prevotella tannerae ATCC 51259]
          Length = 824

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/311 (17%), Positives = 104/311 (33%), Gaps = 53/311 (17%)

Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212
            L       I+ +    +  +A  +  E     + +++E       L + +     + + 
Sbjct: 60  SLRRSEAALIEVIGEEEALAKAQQEAPENRMPLHPTAEEEAELQQRLLHKMEKMADEKRR 119

Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-----EGY 267
                    + +LG+ N GK+SLFN  +      V +  G T        D        Y
Sbjct: 120 T------IYVALLGNPNCGKTSLFNIASGAHE-HVGNYSGVTVGAKDGFFDFTAKNGNTY 172

Query: 268 LVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNI 320
             +I D  G    +    E+  +++  +E E  D+I+ + + ++ +            N+
Sbjct: 173 HFRIVDLPGTYSLSTYSPEELYVRKQLIE-ETPDVIVNVIDASNLERNLYLTTQLIDMNL 231

Query: 321 DFIFIGTKSDLYSTYTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKK 368
             +      D      ++ DH                 TG G+EEL  K+ ++      K
Sbjct: 232 PLVCALNMYDELEARGDQLDHHTLGILLGTPMIPTVCRTGRGIEELFEKVIAVYDGNNPK 291

Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR-------LASVSLGKITG 421
           +   I  H  H   L  ++  ++ A               +R       LA   L    G
Sbjct: 292 ISRHI--HINHGPELESSIDKIKAAFQRNDR---------IRYKYSTRYLAIKCLE---G 337

Query: 422 CVDVEQLLDII 432
             +V+ L+D +
Sbjct: 338 DKEVDSLIDKL 348


>gi|242242589|ref|ZP_04797034.1| GTP-binding protein [Staphylococcus epidermidis W23144]
 gi|242234016|gb|EES36328.1| GTP-binding protein [Staphylococcus epidermidis W23144]
          Length = 416

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 95/249 (38%), Gaps = 17/249 (6%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + +     ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 124 LRARSREGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 182

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        ++I ++G++NAGKSS FN LA ++     +I   
Sbjct: 183 NEIKHQLKTVVDHRERYRNKREQNQVFQIALVGYTNAGKSSWFNVLANEE-TYEKNILFA 241

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T  + + EG+ + ISDT G  +          K T  E + AD+++ + + +  +
Sbjct: 242 TLDPKTRQIQVNEGFNLIISDTVGFIQKLPTTLVAAFKSTLEEAKGADILMHVVDASHSE 301

Query: 313 ---EISFPK---------NIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIK 359
              +I             +I  + I  K DL +   +         F     E    K+K
Sbjct: 302 YRTQIDTVNQIINDLEMDHIPQVVIFNKKDLCNEQMDVPVSKSAHVFVSSRDENDKEKVK 361

Query: 360 SILSNKFKK 368
           +++  + K 
Sbjct: 362 NLVIQEIKN 370


>gi|152992399|ref|YP_001358120.1| ferrous iron transport protein B [Sulfurovum sp. NBC37-1]
 gi|151424260|dbj|BAF71763.1| ferrous iron transport protein B [Sulfurovum sp. NBC37-1]
          Length = 707

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 92/255 (36%), Gaps = 48/255 (18%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL------EGYLVKISD 273
             + + G  N GKSSL NA++   +  V +  G T D   +   +      E Y V I D
Sbjct: 4   IVVALAGQPNVGKSSLINAISNAKLK-VGNFSGVTVDKTEVVFKMCHEQSCEDYEVHIID 62

Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGT 327
             G     +   +E + ++FL+ +  D+I+ + +  + +                +    
Sbjct: 63  LPGAYSLTEYTIEEKVTKSFLQSDEYDIIVNVVDSTNLQRNLLFTTQLLETGKKVVVALN 122

Query: 328 KSDLYSTYTEEYD------------HLISSFTGEGLEELINKIKS-----------ILSN 364
            SD       E D               S+ T EG+EEL   I             I S+
Sbjct: 123 MSDEAEKEGIEIDEKQLSAILGVPCIKTSANTKEGIEELKKAIVEVYEKEETTSKVIYSD 182

Query: 365 KFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKD----------CGLDIIAENLRLAS 413
             ++    I +  +   + S    R+L +  L E +            ++++   +R A 
Sbjct: 183 PIEEEIDRIVTFMKEKNYKSDLPYRHLAVKLLQEDEDVYKKMHDEPIWIELLPI-IREAL 241

Query: 414 VSLGKITGCVDVEQL 428
             +   TG  ++E++
Sbjct: 242 QHIYLHTGTKNLEEI 256


>gi|77919639|ref|YP_357454.1| GTP-binding protein [Pelobacter carbinolicus DSM 2380]
 gi|77545722|gb|ABA89284.1| GTP-binding protein [Pelobacter carbinolicus DSM 2380]
          Length = 547

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 22/170 (12%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280
           I I+G++NAGKS+L NAL + +V    D+   T D  +  L       V I+DT G    
Sbjct: 380 ISIVGYTNAGKSTLLNALTQSEV-FTEDLLFATLDTSSRRLRFPMEREVIITDTVGFIRK 438

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------EISFPKNIDFIFIGT 327
                    + T  E+E+ADL+L + +++  +             E+   + I    +  
Sbjct: 439 LPKSLVGAFRATLEELEDADLLLHVVDVSHPRFEEHISAVEAILNELDLGR-IPRQLVFN 497

Query: 328 KSDLYSTYTEEY------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371
           K DL S+   E          +S+   +  E L+  ++        + P 
Sbjct: 498 KIDLVSSQQVEALCRRFQAVAVSARNRKTFEPLLTMLEGRFWPGEMEGPD 547


>gi|91089351|ref|XP_972899.1| PREDICTED: similar to GA19430-PA [Tribolium castaneum]
          Length = 363

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 88/220 (40%), Gaps = 9/220 (4%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE---IIRNG-Y 220
           +    S IE ++  +++     +    +   +   ++ +     + + GE   ++++G  
Sbjct: 3   ILEKISEIEKEISRTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKSEKGEGFDVLKSGDA 62

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  + GKS+L + L K + +       TT   +   +D  G  +++ D  GI E 
Sbjct: 63  RVALIGFPSVGKSTLLSTLTKTE-SEAASYEFTTLTCIPGVIDYNGANIQLLDLPGIIEG 121

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG---TKSDLYSTYTE 337
               +  G ++       ADL+L++ +   K         +   +G    K      +  
Sbjct: 122 AAQGKGRG-RQVIAVARTADLVLMMLDATKKDVHRHLLEKELESVGIRLNKMKPNIYFKV 180

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +    IS  +   L ++  K+  ++ +++K     +   +
Sbjct: 181 KKGGGISFNSTCPLTKIDEKLVQMILHEYKIFNAEVLFRE 220


>gi|87301403|ref|ZP_01084244.1| putative GTP-binding protein, transporter associated [Synechococcus
           sp. WH 5701]
 gi|87284371|gb|EAQ76324.1| putative GTP-binding protein, transporter associated [Synechococcus
           sp. WH 5701]
          Length = 548

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 75/193 (38%), Gaps = 35/193 (18%)

Query: 199 LKNDISSHISQGKLGEIIRNG----YKIVILGHSNAGKSSLFNALA----KKDVAIVTDI 250
           L+ D+      G+    +R G     ++ ++G++NAGKSSL NAL      ++V +  + 
Sbjct: 355 LQRDVERL---GEHRARLRQGRGGLKRLALVGYTNAGKSSLLNALTQPVAGEEV-LAENK 410

Query: 251 PGTTRDVLTIDLDLEG-----YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305
              T D  T  LDL         + ++DT G          E  + T  E   AD +L++
Sbjct: 411 LFATLDPTTRRLDLPDGSGAVRRLLLTDTVGFIRELPPPLVEAFRSTLEETLEADGLLIV 470

Query: 306 KEINSKKE-----------ISFPKNIDFIFIGTKSD------LYSTYTEEYDHLISSFT- 347
            ++                 S   +     +  + D      L    + + D +  S T 
Sbjct: 471 VDLADPAWPVQLRTVHTILDSLGSHAPRRLVANQIDRCPATALEQARSFDADVVFISATA 530

Query: 348 GEGLEELINKIKS 360
           G GL+ L + ++ 
Sbjct: 531 GLGLQHLRDMLQD 543


>gi|281423134|ref|ZP_06254047.1| ferrous iron transport protein B [Prevotella oris F0302]
 gi|281402470|gb|EFB33301.1| ferrous iron transport protein B [Prevotella oris F0302]
          Length = 823

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 75/191 (39%), Gaps = 21/191 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
             + ++G+ N GK+SLFN  +   +   V +  G T D      + EGY   + D  G  
Sbjct: 120 INVALVGNPNCGKTSLFNFASGAHER--VGNYSGVTVDAKVGHAEFEGYTFNLVDLPGTY 177

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLY 332
                  +E   R  +  +  D+I+ + + ++ +            N+  +      D  
Sbjct: 178 SLSAYSPEELYVRKQIIDKTPDVIINVLDASNLERNLYLTTQLIDMNLRMVCALNMFDET 237

Query: 333 STYTEEYDHLISS------------FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
               ++ D    S             +GEG+++L ++I  +  +  ++LP +   H  H 
Sbjct: 238 QRRGDKIDINKLSELFGVPMVPTVFKSGEGVKQLFHQIIELYESNGEELPHAHHIHINHG 297

Query: 381 YHLSQTVRYLE 391
           + +   + +++
Sbjct: 298 HEIENGITHIQ 308


>gi|269137711|ref|YP_003294411.1| GTP-binding protein HflX [Edwardsiella tarda EIB202]
 gi|267983371|gb|ACY83200.1| GTP-binding protein HflX [Edwardsiella tarda EIB202]
 gi|304557765|gb|ADM40429.1| GTP-binding protein HflX [Edwardsiella tarda FL6-60]
          Length = 426

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 92/279 (32%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      ++ ++
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRDRIH 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I+     +     QG+   +      + ++G++NAGKS+LFN L    V    D    T
Sbjct: 173 LIIGRLEKVEKQREQGRRARVRAEIPTVSLVGYTNAGKSTLFNTLTSATV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            D     +++       ++DT G             K T LE   A L+L + + +  + 
Sbjct: 232 LDPTLRRVEVNDVGPTVLADTVGFIRHLPHDLVAAFKATLLETRQASLLLHVVDASDTRV 291

Query: 314 ISF------------PKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                             I  + +  K D+   +    D           +S+    G++
Sbjct: 292 DENIDAVNTVLADIGADEIPVLLVMNKIDMLQDFVPRIDRDEENRPLRVWVSAQQASGMD 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            L   +   L  +       +P      R  ++  Q + 
Sbjct: 352 LLFQALSERLGGEIASYTLRLPPAAGRLRSRFYQLQAIE 390


>gi|118594970|ref|ZP_01552317.1| GTP-binding protein, HSR1-related [Methylophilales bacterium
           HTCC2181]
 gi|118440748|gb|EAV47375.1| GTP-binding protein, HSR1-related [Methylophilales bacterium
           HTCC2181]
          Length = 373

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 24/165 (14%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG 276
           N   + I+G++NAGKS+LFN L  + + +  D    T D  +  L LE  + + ISDT G
Sbjct: 197 NVLTVSIVGYTNAGKSTLFNTLTHEKI-LAEDKLFATLDTTSRKLFLEPNHKLVISDTVG 255

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-------------KKEISFPKNIDFI 323
             +       E  K T  E  ++DL++ + ++++              KEI    ++  I
Sbjct: 256 FIKNLPTTLVEAFKSTLEEATDSDLLIHVVDVSNNNKSEQIVEVDKILKEIK-ANDLPQI 314

Query: 324 FIGTKSDLY--------STYTEEYDHLISSFTGEGLEELINKIKS 360
            +  + D            Y       +S+ TG G+E L   +  
Sbjct: 315 LVLNQIDKIPLKAMFDRDEYGTISRIQLSAKTGNGIEFLKQALVE 359


>gi|194337812|ref|YP_002019606.1| ferrous iron transport protein B [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194310289|gb|ACF44989.1| ferrous iron transport protein B [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 712

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 19/160 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + + G+ N GKSSLFNAL       V +  G T +     L+ +GY + + D  GI  
Sbjct: 7   ITVALAGNPNCGKSSLFNALTGSHQK-VGNFSGVTVEKYEGYLEYKGYHITVVDLPGIYS 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------DFIFIGTKSDLYS 333
                 +E + R +L  E  D+++ + E ++ +              DF+      D   
Sbjct: 66  LTPYSPEEIVTREYLIKERPDVVVNVLEGSNLERNLLLTTQLMELEVDFLVALNMIDEVE 125

Query: 334 ------------TYTEEYDHLISSFTGEGLEELINKIKSI 361
                            +    S+  G GL+ L++ I  +
Sbjct: 126 EKGITIEIKQLQKLLGCHIVPTSAKKGRGLDSLLDHIIRL 165


>gi|72381985|ref|YP_291340.1| small GTP-binding protein domain-containing protein
           [Prochlorococcus marinus str. NATL2A]
 gi|72001835|gb|AAZ57637.1| Small GTP-binding protein domain [Prochlorococcus marinus str.
           NATL2A]
          Length = 517

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKI 271
           E+ R    +V+ G  ++GK+SL  AL KK V  V+   G+TR   T  L L+G    ++I
Sbjct: 118 ELDRGDIILVVFGIGSSGKTSLIRALLKKIVGKVSPEMGSTRGKETFRLKLKGLTRGIRI 177

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFI 325
            DT GI E      +E  K   +E   +DL+L++ E + + E +             + +
Sbjct: 178 IDTPGILEAGRGG-REREKSALIEARKSDLMLVVIEGDLRSEETRTIRSLSKLGKRLLLV 236

Query: 326 GTKSDLYSTYTEE 338
             K DL     E+
Sbjct: 237 LNKIDLRGESEEK 249


>gi|195054541|ref|XP_001994183.1| GH23383 [Drosophila grimshawi]
 gi|193896053|gb|EDV94919.1| GH23383 [Drosophila grimshawi]
          Length = 363

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 89/220 (40%), Gaps = 9/220 (4%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE---IIRNG-Y 220
           +    + IE ++  +++     +    +   +   ++ +     +G+ GE   ++++G  
Sbjct: 3   ILEKIAEIEREIARTQKNKATEYHLGLLKAKLAKYRSQLLEPTKKGEKGEGFDVLKSGDA 62

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  + GKS++ + L K + +   +   TT   +   ++ +G  +++ D  GI E 
Sbjct: 63  RVALIGFPSVGKSTMLSTLTKTE-SEAANYEFTTLTCIPGVIEYQGANIQLLDLPGIIEG 121

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNIDFIFIGTKSDLYSTYTE 337
               +  G ++       ADL+L++ +       +E+   +         K      + +
Sbjct: 122 AAQGKGRG-RQVIAVARTADLVLMMLDATKPNVHRELLERELESVGIRLNKRKPNIYFKQ 180

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +    +S  +   L     K+  ++ + FK     +   +
Sbjct: 181 KKGGGLSFNSTCALTRCSEKMVQMILHSFKIFNAEVLFRE 220


>gi|332374920|gb|AEE62601.1| unknown [Dendroctonus ponderosae]
          Length = 363

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 88/220 (40%), Gaps = 9/220 (4%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE---IIRNG-Y 220
           +    S IE ++  +++     +    +   +   ++ +     + + GE   ++++G  
Sbjct: 3   ILEKISEIEKEISRTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKSEKGEGFDVLKSGDA 62

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  + GKS+L + L K + +       TT   +   +D  G  +++ D  GI E 
Sbjct: 63  RVALIGFPSVGKSTLLSTLTKTE-SEAASYEFTTLTCIPGVIDYNGANIQLLDLPGIIEG 121

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNIDFIFIGTKSDLYSTYTE 337
               +  G ++       ADL+L++ +   K   +E+   +         K      +  
Sbjct: 122 AAQGKGRG-RQVIAVARTADLVLMMLDATKKDVHRELLEKELESVGIRLNKQKPNIYFKI 180

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +    +S  +   L  +  K+  ++ +++K     +   +
Sbjct: 181 KKGGGVSFNSTCPLTRIDEKLVQLILHEYKIFNAEVLFRE 220


>gi|238759683|ref|ZP_04620843.1| GTP-binding protein era [Yersinia aldovae ATCC 35236]
 gi|238702111|gb|EEP94668.1| GTP-binding protein era [Yersinia aldovae ATCC 35236]
          Length = 284

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 68/190 (35%), Gaps = 22/190 (11%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGI 289
           GKS+L N L  + ++I +  P TTR  +        Y     DT G+  +    + +   
Sbjct: 2   GKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIDEKRAINRLMN 61

Query: 290 KRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL 342
           +     + + +L++ + E     +  E+   K        +    K D  +  T+   H+
Sbjct: 62  RAASSSIGDVELVIFVVEGTNWTADDEMVVNKLRSLECPVLLAINKVDNVTDKTKLLPHI 121

Query: 343 I--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
                          S+  G  ++ + + ++  +       P    + +   +  S+ +R
Sbjct: 122 QFLSQQMNFLDVVPISAEKGMNVDTIASIVRKHMPEAGHHFPEDYITDRSQRFMASEIIR 181

Query: 389 YLEMASLNEK 398
              M  L E+
Sbjct: 182 EKLMRFLGEE 191


>gi|218249555|ref|YP_002375144.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia burgdorferi
           ZS7]
 gi|218164743|gb|ACK74804.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia burgdorferi
           ZS7]
          Length = 279

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 100/264 (37%), Gaps = 14/264 (5%)

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RA +  K +L +A  + +++ +      +  +     +  +             + I  
Sbjct: 13  KRALDLIKNNLQKANIVLEILDARAPFSSKNPLTEKITKNQAKIILLHKSDVAQINEIIK 72

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
              + E        S      +     DI   ++  K  +  +   K++I+G  N GKSS
Sbjct: 73  WKKYFENLGNTVIISNIYKKGMRKQIIDIIKKLAIVKKIKNYKEKIKVLIIGVPNVGKSS 132

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           + N L+ K  A V + PG T+++  + ++ E   + + D  GI   + + +    K   L
Sbjct: 133 IINLLSGKKSAKVANKPGYTKNIQIVKINEE---INLFDMPGILWHNLVDQSIAKKLAIL 189

Query: 295 EV------ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           ++      +N DL L L EI  +   +       I+     D+   + +          G
Sbjct: 190 DMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKAR-----KLIG 244

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           +  E  + K   IL  +F++  F 
Sbjct: 245 KKNELNLEKASKILIKEFREGKFG 268


>gi|311068267|ref|YP_003973190.1| putative GTP-binding protein protease modulator [Bacillus
           atrophaeus 1942]
 gi|310868784|gb|ADP32259.1| putative GTP-binding protein protease modulator [Bacillus
           atrophaeus 1942]
          Length = 420

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 2/112 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278
            ++ ++G++NAGKS+ FN L   D +   D+   T D +T  + L  GY V +SDT G  
Sbjct: 201 LQLALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLSDTVGFI 259

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330
           +          + T  EV+ AD+IL + + +++      K +  +    K+D
Sbjct: 260 QDLPTTLIAAFRSTLEEVKEADVILHVIDSSNEDYTGHEKTVIRLLEELKAD 311


>gi|218768267|ref|YP_002342779.1| hypothetical protein NMA1445 [Neisseria meningitidis Z2491]
 gi|121052275|emb|CAM08603.1| hypothetical protein NMA1445 [Neisseria meningitidis Z2491]
          Length = 369

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 70/213 (32%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + + + I  LK  +++   Q  L    R         ++G++N GKSSLFN L K  +
Sbjct: 157 DRRLIAHRINALKKQLANLKKQRALRRKSRESGTIKTFALVGYTNVGKSSLFNRLTKSGI 216

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 217 YAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDLPHKLISAFSATLEETAQADVLLH 276

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 277 VVDAAAPNSGQQIEDVENVLQEIHAGDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 336

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 337 RISVAENTGIDALREAIAEYCAAAPNTDETEMP 369


>gi|116511052|ref|YP_808268.1| GTPase [Lactococcus lactis subsp. cremoris SK11]
 gi|116106706|gb|ABJ71846.1| GTP-binding protein HflX [Lactococcus lactis subsp. cremoris SK11]
          Length = 414

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 82/216 (37%), Gaps = 18/216 (8%)

Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV-AIVT 248
           +  + +I      +       +        ++I ++G++NAGKSS+ NAL   D      
Sbjct: 170 RTRIENIDKALKKVEKTRENIRQKRSKSGIFRIGLIGYTNAGKSSIMNALVGLDKEQYEQ 229

Query: 249 DIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           +    T D  T  + L E ++V ++DT G  +       +  K T  E  N DL++ + +
Sbjct: 230 NELFATLDATTKAVQLVEDFMVSLTDTVGFIQNLPTELIKAFKSTLEESANVDLLIHVID 289

Query: 308 INSKK------------EISFPKNIDFIFIGTKSDLYST---YTEEYDHLISSFTGEGLE 352
            ++              E     NI  + +  K D+  +    T      +S  +  G++
Sbjct: 290 ASNPHHEIHEQTVLKIMEDLKLTNIPVLNVYNKMDIAPSDFLPTLSPSLQLSIKSESGVQ 349

Query: 353 ELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTV 387
            L   I   L   F+     +P  K   L  L ++ 
Sbjct: 350 WLKTAILEKLHELFEAFEIELPYEKAYQLPELRKSA 385


>gi|291545251|emb|CBL18360.1| GTP-binding protein HflX [Ruminococcus sp. 18P13]
          Length = 417

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 73/213 (34%), Gaps = 16/213 (7%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            + T   R                    +L+ +   I        + +      +  +++
Sbjct: 114 RATTHEGRLQVELAQQRYRLPRLAGMGIQLSRLGGGIGTRGPGETKLETDKRHIRTRISN 173

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
           +     +I             ++G  +  I+G++N GKS+L N L    V +  +    T
Sbjct: 174 LSAELKEIEKR-RTYARSRRKKDGVLVCAIVGYTNVGKSTLLNLLTDAGV-LAENKLFAT 231

Query: 255 RDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313
            +  +  ++L +G  + + DT G+         E  K T  E  NAD+IL + + +++  
Sbjct: 232 LETTSRAIELPDGRSLMLVDTVGLIRRLPHHLVEAFKSTLEEAANADVILHICDASAENC 291

Query: 314 ISFPK------------NIDFIFIGTKSDLYST 334
               +             I  + +  K DL   
Sbjct: 292 EEQAQVTLDLLSELGCDGIPVVTVFNKCDLLPE 324


>gi|1750108|gb|AAB41077.1| YnbA [Bacillus subtilis]
          Length = 334

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 19/211 (9%)

Query: 120 NGKIDLLEAESLADLISSETEMQRRLSM-------EGMSGELSSLYGQWIDKL------- 165
           N ++   + +SLA  I  +   + +L +           G+L     Q    L       
Sbjct: 55  NDELSPSQLKSLATAIEVKMIDRTQLILDILAKRARTREGKLQIELAQLQYALPRLTGQG 114

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII--RNG-YKI 222
            ++             E       + + N I  +   +S+ I           +NG  +I
Sbjct: 115 INLSRQGGGIGARGPGETKLETDRRHIRNRIHEINTQVSTVIRHRSRYRERRKKNGVLQI 174

Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETD 281
            ++G++NAGKS+ FN L   D +   D+   T D +T  + L  GY V +SDT G  +  
Sbjct: 175 ALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLSDTVGFIQDL 233

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK 312
                   + T  EV+ ADLIL L + +++ 
Sbjct: 234 PTTLIAAFRSTLEEVKEADLILHLIDSSNED 264


>gi|262047463|ref|ZP_06020419.1| GTP-binding protein HflX [Lactobacillus crispatus MV-3A-US]
 gi|260572233|gb|EEX28797.1| GTP-binding protein HflX [Lactobacillus crispatus MV-3A-US]
          Length = 421

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 83/215 (38%), Gaps = 26/215 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
             + + +   I  +K ++ +   Q ++    RN     K+ ++G++NAGKS+  N L ++
Sbjct: 162 ELNRRTIGKQISAIKKELKAVAGQEEIKAARRNQSRIPKVALVGYTNAGKSTTMNGLLRE 221

Query: 243 -------DVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFL 294
                      V ++   T D     +DL+  +   +SDT G          E  K T  
Sbjct: 222 FSKEGADKEVFVKNMLFATLDTSVRRIDLKDNFSFILSDTVGFISKLPHNLVESFKATLQ 281

Query: 295 EVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTY---TEEY 339
           E  +ADL++ + + +    +               K I  I    K+D         E  
Sbjct: 282 ETRDADLLINVVDASDPNMVQMIRTTQNVLDEIGVKEIPMITAYNKADKTDRNYPQIEGD 341

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D L S+   + ++ L N I   +   +KK    +P
Sbjct: 342 DILYSAIDPKSIKLLANLITKRVFANYKKFDLILP 376


>gi|254479662|ref|ZP_05092962.1| ferrous iron transport protein B, putative [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034403|gb|EEB75177.1| ferrous iron transport protein B, putative [Carboxydibrachium
           pacificum DSM 12653]
          Length = 624

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 65/168 (38%), Gaps = 13/168 (7%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++++G  N GKS   N L    V IV++ PGTT DV      +     +  DT GI    
Sbjct: 1   MLLVGQPNVGKSLFLNTLTGAKV-IVSNYPGTTVDVTEGRTKVGDESWEFVDTPGIYSLT 59

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341
              E+E +    +   N D ++ + +      ++  +N+        ++L   +    + 
Sbjct: 60  PSSEEEKVTYRIVLEGNYDFVIHILDA-----LALERNLIISLQL--AELGVPFMIAVNF 112

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389
              +   +G++  +  ++ +L          I   K+ +  L    + 
Sbjct: 113 YEEALK-KGMKIDLRALEELLGVPV----VVINPFKKEIEKLKNAFKS 155


>gi|297738021|emb|CBI27222.3| unnamed protein product [Vitis vinifera]
          Length = 423

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 96/284 (33%), Gaps = 67/284 (23%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273
           E  +    + I+G  NAGKSSL N +    VA V+    TT   +   +      +   D
Sbjct: 134 EEDQRSLSVGIIGAPNAGKSSLTNHVVGTKVAAVSRKTNTTTHEVLGVMTKGNTQICFFD 193

Query: 274 TAGIRET----DDIVEKEGIKRTFLEVENADLILLLKEIN--------------SKKEIS 315
           T G+            +  ++  +  V   D+++++ +++               +    
Sbjct: 194 TPGLMLKSSGYPYSDMRARVESAWSSVGLYDVLIVIFDVHRHLSRPDSRVVRLIERMGAQ 253

Query: 316 FPKNIDFIFIGTKSDLYSTYTE--------------EYDHLISSFTGEGLEELINKI-KS 360
                  +    K DL     +              E   +IS   G G+++L   + + 
Sbjct: 254 AHPKQKRVLCMNKVDLVEKKKDLLKVADEFKDLPGYERYFMISGLKGSGVKDLTQFLMEQ 313

Query: 361 ILSNKFKKLPFSI-----------PSHKRHLYHLSQTV------RYLEMASLNEKDCGLD 403
                + + PF++              +R L H+ Q +      R ++   L +    ++
Sbjct: 314 AFKRPWDEDPFTMSEEVMKNISLEVVRERLLDHVHQEIPYGIDHRLIDWKELRDGSLRIE 373

Query: 404 IIAENL---RLASV---------SLGKITGCVDVEQLLDIIFSK 435
              ++L   + +            +G+I G    E+ L  IF +
Sbjct: 374 ---QHLITPKQSQRKILVGKKGSKIGRI-GIEANEE-LRSIFKR 412


>gi|56750406|ref|YP_171107.1| hypothetical protein syc0397_d [Synechococcus elongatus PCC 6301]
 gi|81299962|ref|YP_400170.1| hypothetical protein Synpcc7942_1153 [Synechococcus elongatus PCC
           7942]
 gi|56685365|dbj|BAD78587.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168843|gb|ABB57183.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 614

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/351 (16%), Positives = 119/351 (33%), Gaps = 44/351 (12%)

Query: 95  ILEELAKMPN-------LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSM 147
           +L+ L            L+ A   + ++R ++  +  L  A ++A       E  R  S 
Sbjct: 158 LLDRLTIAQAYQAYRWSLKAAPWLKRAQRVWDAAQWLLHPAWAIAR------EATREASD 211

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI 207
                  ++L  Q  +           +L   +         +  L     L + +    
Sbjct: 212 RTNQALFANLGQQMREAALENLWQRSLELYRGQSLPTAIAVPEAPL--TESLLSQVQQWQ 269

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-G 266
           +  ++ E      + +++G + AGKSSL NAL + + AIV  +P +T  + T D  L+ G
Sbjct: 270 TDTQVVESA--PLRFLLIGRTGAGKSSLINALFQTETAIVDCLP-STPAIQTYDWQLDNG 326

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------- 318
             +++ D+ G  +       E +       + AD ++LL         S  +        
Sbjct: 327 DRLQLLDSPGYEQAGRFDLWESV---LTAADTADAVVLLTPATDPALASDRRCLQDLRSR 383

Query: 319 --NIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIK----SILSNKFKKLPF 371
             ++  +   T  D    + E +  +            +   +      +       +P 
Sbjct: 384 RPDLPLLIGVTHVDRLRPWAEWQPPYDWQQGNRPKEVAMREAVAYRQTELADFSETVIPL 443

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL--GKIT 420
           +  +  R  ++L      L       +   L   A +LR     L  G+IT
Sbjct: 444 ANANGARSSWNLEAIAAALLQTCPEAQQLRL---AAHLRD--RQLRAGQIT 489


>gi|23957813|gb|AAN40826.1| unknown [Synechococcus elongatus PCC 7942]
          Length = 613

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/351 (16%), Positives = 119/351 (33%), Gaps = 44/351 (12%)

Query: 95  ILEELAKMPN-------LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSM 147
           +L+ L            L+ A   + ++R ++  +  L  A ++A       E  R  S 
Sbjct: 157 LLDRLTIAQAYQAYRWSLKAAPWLKRAQRVWDAAQWLLHPAWAIAR------EATREASD 210

Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI 207
                  ++L  Q  +           +L   +         +  L     L + +    
Sbjct: 211 RTNQALFANLGQQMREAALENLWQRSLELYRGQSLPTAIAVPEAPL--TESLLSQVQQWQ 268

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-G 266
           +  ++ E      + +++G + AGKSSL NAL + + AIV  +P +T  + T D  L+ G
Sbjct: 269 TDTQVVESA--PLRFLLIGRTGAGKSSLINALFQTETAIVDCLP-STPAIQTYDWQLDNG 325

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------- 318
             +++ D+ G  +       E +       + AD ++LL         S  +        
Sbjct: 326 DRLQLLDSPGYEQAGRFDLWESV---LTAADTADAVVLLTPATDPALASDRRCLQDLRSR 382

Query: 319 --NIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIK----SILSNKFKKLPF 371
             ++  +   T  D    + E +  +            +   +      +       +P 
Sbjct: 383 RPDLPLLIGVTHVDRLRPWAEWQPPYDWQQGNRPKEVAMREAVAYRQTELADFSETVIPL 442

Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL--GKIT 420
           +  +  R  ++L      L       +   L   A +LR     L  G+IT
Sbjct: 443 ANANGARSSWNLEAIAAALLQTCPEAQQLRL---AAHLRD--RQLRAGQIT 488


>gi|76802506|ref|YP_327514.1| GTP-binding protein [Natronomonas pharaonis DSM 2160]
 gi|76558371|emb|CAI49962.1| GTP-binding protein [Natronomonas pharaonis DSM 2160]
          Length = 435

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 83/249 (33%), Gaps = 40/249 (16%)

Query: 157 LYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEII 216
            Y     +     +  +    F    +      +++   I  +++++       +     
Sbjct: 125 RYELPRAEAKASLAKRDERPGFMGLGEYDESREQDIKAQISRIRDELERIEQTEEHRREQ 184

Query: 217 R--NGYK-IVILGHSNAGKSSLFNALAKK--------------DVAIVTDIPGTTRDVLT 259
           R  +G+  + + G++NAGKS+L   LA                  A   D   TT    T
Sbjct: 185 RRESGFDLVALAGYTNAGKSTLLRRLAADVDIDENEGLHPDLDATAESEDRLFTTLGTTT 244

Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK- 318
              D +   V ++DT G          E  K T  EV  ADL+LL+ +++   E    K 
Sbjct: 245 RRADFDRRDVLVTDTVGFISDLPHWLVESFKSTLSEVYRADLVLLVVDVSDPVEEIREKL 304

Query: 319 -----------NIDFIFIGTKSDLYSTYTEEY-----------DHLISSFTGEGLEELIN 356
                          + +  K D       E              ++S+ TGE ++ L  
Sbjct: 305 VTCHDTLYERNEAPIVTVLNKIDRVDDEELERKREALSALAPEPIVVSAKTGENVDSLRE 364

Query: 357 KIKSILSNK 365
           +I   L + 
Sbjct: 365 RIDEELPDW 373


>gi|220910499|ref|YP_002485810.1| small GTP-binding protein [Cyanothece sp. PCC 7425]
 gi|219867110|gb|ACL47449.1| small GTP-binding protein [Cyanothece sp. PCC 7425]
          Length = 566

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 89/227 (39%), Gaps = 40/227 (17%)

Query: 159 GQWIDKLTHIRSFIEADLDFSEEE-DVQNFSSKEVL--NDILFLKNDISSHISQGKLGEI 215
            +  + +    + ++A+L++++ +  VQ    +  L   +   L+ +++    +    ++
Sbjct: 95  NELEEVIQEFEA-MQAELNYAQAQRSVQTLVDRLDLTPQEQQGLERELNDL--EQMRQKL 151

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR----------DVLTI----- 260
                 I + G    GKSSL NAL  +D+ +   I G TR          D LT      
Sbjct: 152 EHQVVHIAVFGMVGRGKSSLLNALLGRDIFVTGPIHGVTRNSDRALWAGIDPLTGKQQSG 211

Query: 261 -DLDLEGY---LVKISDTAGIRETDDIVEKEGIKR-TFLEVENADLILLL-------KEI 308
             + L+G     +++ DT GI E D     E  ++      + ADLIL +        E 
Sbjct: 212 LRISLQGVGQSRIELIDTPGIDEVDG----EKREQLARQVAKQADLILFVISGDMTKVEH 267

Query: 309 NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355
            +  E+        + +  K D Y     +  +  +    E + EL+
Sbjct: 268 RALTELRQASK-PILLVFNKIDQYPETDRQAIY--AKIRDERVRELL 311


>gi|313672845|ref|YP_004050956.1| ribosome biogenesis gtp-binding protein ysxc [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939601|gb|ADR18793.1| ribosome biogenesis GTP-binding protein YsxC [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 196

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 29/170 (17%)

Query: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG---- 276
           +  +G SN GKSS  N L  +KD+A V   PG TR +    +  +     + D  G    
Sbjct: 25  VCFVGKSNVGKSSAINTLINRKDLARVGKTPGKTRLLNFFSIKAKDISFVLVDLPGYGYA 84

Query: 277 -IRETDDIVEKEGIKRTFLEVENADLILLLKEI----NSKKEISF----PKNIDFIFIGT 327
            + + +    K+ I+       N  L++ + +I    + + E+ F      N DF+ + T
Sbjct: 85  QVSKKEREEWKKSIENYLKFRNNLKLVVFILDIRRDPDEQDEVMFKWLKAYNKDFVMLLT 144

Query: 328 KSD---------------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362
           KSD               L+     +   + SS T  G +EL  KI    
Sbjct: 145 KSDKLSNNEIAKRLKELYLHPMINVDNCIIFSSLTKRGKDELYQKIVECC 194


>gi|311693676|gb|ADP96549.1| GTP-binding protein Era-like protein [marine bacterium HP15]
          Length = 305

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 71/224 (31%), Gaps = 39/224 (17%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + I+G  N GKS+L N +  + ++I +  P TTR  +     +        DT G
Sbjct: 13  RCGF-VAIVGRPNVGKSTLLNHILGQKLSITSRKPQTTRHQVLGIKTVGPVQAIYVDTPG 71

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFIF 324
           + E     E   I R   +   + LI +   +    ++++                  I 
Sbjct: 72  MHEE----EPRAINRYMNKAATSALIDVDVVVFVVDQLAWTTADEMVLEKLSRLKCPVIL 127

Query: 325 IGTKSDLYSTYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLP 370
              K D          H               +S+     LE L   +   L       P
Sbjct: 128 AVNKVDKIEKRESLLPHLDMLSKKREFAEIIPLSALKETNLEPLEEAVGRFLPESIHFYP 187

Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI---IAENLRL 411
               + +   +  S+ VR         +  G ++   +A  +  
Sbjct: 188 DDQITDRSERFLASEIVR-----EKITRQLGAELPYSVAVEIEE 226


>gi|29347002|ref|NP_810505.1| putative ferrous iron transport protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253572640|ref|ZP_04850041.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29338900|gb|AAO76699.1| putative ferrous iron transport protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837772|gb|EES65862.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 828

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +     E L + + +K +    ++ GK     R    + ++G+ N+GK+SLFN  +    
Sbjct: 82  EKAVYHEGLPEDVSVKEEDMKRLALGK-----RRTINVALVGNPNSGKTSLFNLASGAHE 136

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
             V +  G T D      D EGY  +I D  G         +E   R  +  E  D+I+ 
Sbjct: 137 -HVGNYSGVTVDAKEGYFDFEGYHFRIVDLPGTYSLSAYTPEEIYVRRHIVDETPDVIIN 195

Query: 305 LKEINSKK 312
           + + ++ +
Sbjct: 196 VVDSSNLE 203


>gi|114563782|ref|YP_751295.1| ferrous iron transport protein B [Shewanella frigidimarina NCIMB
           400]
 gi|114335075|gb|ABI72457.1| ferrous iron transport protein B [Shewanella frigidimarina NCIMB
           400]
          Length = 770

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 27/213 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           +  V +G+ NAGKS+LFNAL       V +  G T +  T  L+  G  + ++D  GI +
Sbjct: 5   FHCVTVGNPNAGKSTLFNALTGASQQ-VGNWSGVTVEKKTGKLNYSGTDIFLTDLPGIYD 63

Query: 280 ------TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGT 327
                 + D    E I + +L  +  D I+ L +  + +             I  I +  
Sbjct: 64  LLPAGNSCDCSLDEQIAQAYLSNQQVDAIINLVDATNVERHLYLTTQLRELGIPIIVVIN 123

Query: 328 KSDLYSTYTEEYDHLISS--------FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
           K D         +    S              +  + ++++ L +  +K   +     ++
Sbjct: 124 KIDAAKKLGININVDDMSARLGCPVVAICSRSKADVEQLQAELMSLLEKGDSTKSLMLQY 183

Query: 380 LYHLSQTVRYLEM------ASLNEKDCGLDIIA 406
              +  +V  L+M       +   +   L I+A
Sbjct: 184 HTDIEASVTALQMQNDSQGLTALSRGQALAILA 216


>gi|310642424|ref|YP_003947182.1| gtp-binding proten hflx [Paenibacillus polymyxa SC2]
 gi|309247374|gb|ADO56941.1| GTP-binding proten HflX [Paenibacillus polymyxa SC2]
          Length = 428

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 2/177 (1%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
            ++T              L          L+ +   I        + +      ++ ++D
Sbjct: 124 RAKTREGIIQVELAQLSYLLPRLSGHGKNLSRLGGGIGTRGPGESKLETDRRHIRDRISD 183

Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255
           +     +++ H    +         ++ ++G++NAGKS+L   L   DV I  +    T 
Sbjct: 184 LKRQLEEVTRHRYLHRERRQKAGIVQVALVGYTNAGKSTLLKQLTAADVYI-ENQLFATL 242

Query: 256 DVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
           D  +  ++L  G  V ++DT G  +          + T  E   A LIL + + +S 
Sbjct: 243 DPTSRTMELPSGKEVILTDTVGFIQNLPHDLVASFRATLEEANEAHLILHVVDASSD 299


>gi|305663700|ref|YP_003859988.1| small GTP-binding protein [Ignisphaera aggregans DSM 17230]
 gi|304378269|gb|ADM28108.1| small GTP-binding protein [Ignisphaera aggregans DSM 17230]
          Length = 718

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 83/221 (37%), Gaps = 26/221 (11%)

Query: 206 HISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
            I   +  E    G   ++ ++G  + GKS+LFNAL    V  V   PGTT +     + 
Sbjct: 15  IIESIRRIEEETKGCDIRVALIGQPSVGKSALFNALTGASVK-VASFPGTTVEYKVGRVR 73

Query: 264 LEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------SF 316
            +G  + + D  GI       +E+   K   +E++  D  L+L +    +          
Sbjct: 74  YKGRSICVVDLPGIYTLMPYTLEETITKLASMEIKF-DWYLVLVDSTRFERTFYLALKVL 132

Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHL------------ISSFTGEGLEELINKIKSILSN 364
               + + I +K D       E D               S+ TG GLEEL++ I  I   
Sbjct: 133 ELFPNTVVILSKWDYTKKLGIEIDIQGLSKHLGVPVVATSAVTGYGLEELLDTI--ISRG 190

Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
             +K   +   ++     LS  ++ L      E    +D+ 
Sbjct: 191 NTEKGIGARIWYEELNEILSGVIKSLGD-MARENRMHIDLF 230


>gi|192358928|ref|YP_001983040.1| GTP-binding protein Era [Cellvibrio japonicus Ueda107]
 gi|190685093|gb|ACE82771.1| GTP-binding protein Era [Cellvibrio japonicus Ueda107]
          Length = 303

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 66/208 (31%), Gaps = 23/208 (11%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           + I+G  N GKS+L N L  + ++I +  P TTR+ +          +   DT G+    
Sbjct: 15  VAIVGRPNVGKSTLLNHLLGQKISITSRKPQTTRNAVVGIKTEGDVQIIFVDTPGLHLGQ 74

Query: 281 DDIVEKEGIKRTFLEVE-------NADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYS 333
              + +   +     ++         D  +  +E ++  +         I    K D   
Sbjct: 75  QKAINRYMNRAASTAMKDVDVVVFVVDRFIWNEEDDAVAQRLSQVKSPIILAVNKVDQIE 134

Query: 334 TYTEEYDH--------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                  H               IS+     LE L   I   L       P    + +  
Sbjct: 135 DKDSLLPHLQALSEKLNVAEIVPISALRNANLERLEALIVERLPEGVHMYPEDQITDRSS 194

Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAE 407
            +  ++ VR      L + +   ++  E
Sbjct: 195 RFMAAEIVREKITRQLGD-ELPYEMAVE 221


>gi|160893993|ref|ZP_02074772.1| hypothetical protein CLOL250_01548 [Clostridium sp. L2-50]
 gi|156864371|gb|EDO57802.1| hypothetical protein CLOL250_01548 [Clostridium sp. L2-50]
          Length = 111

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276
           N   I + G +N+GKSS  N  + ++++IV D+ GTT D +   ++        + DTAG
Sbjct: 11  NRLHIGVFGKTNSGKSSFINRFSGQNISIVADVAGTTTDPVYKAMEVYPLGPCTLIDTAG 70

Query: 277 IRETDDI 283
             +  ++
Sbjct: 71  FNDETEL 77


>gi|323143742|ref|ZP_08078410.1| GTP-binding protein HflX [Succinatimonas hippei YIT 12066]
 gi|322416455|gb|EFY07121.1| GTP-binding protein HflX [Succinatimonas hippei YIT 12066]
          Length = 454

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 95/247 (38%), Gaps = 25/247 (10%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           E ++Q  L+M     E + L   W         F         + ++   + +E +  I 
Sbjct: 120 EGKLQVELAMLRY--EQARLVRGWTHLERQKGGFGLRGGPGETQIELDRRALRERIAAIK 177

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
              + ++S   Q +   +      +  +G++NAGKS+LFN L K  V     +  T    
Sbjct: 178 ADLDVVASRREQNRRQRVKNAVPVVSFVGYTNAGKSTLFNRLTKSAVYEADQLFATLDPT 237

Query: 258 L-TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
           L T+ LD+ G  V  +DT G             K T  E   ADL+L + +   K+    
Sbjct: 238 LRTVSLDVVGKAV-FADTVGFIRHLPHDLIAAFKSTLEETVKADLLLHIIDAADKRVEEN 296

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLEELI 355
            K             +  + +  K+DL  T  ++             +S+ TG GL +L+
Sbjct: 297 IKAVNAVLKQIGADEVPTLLVFNKADLLDTPYDKVVRDETGKPVRVNVSAKTGSGLSDLL 356

Query: 356 NKIKSIL 362
           + +  +L
Sbjct: 357 SCVSELL 363


>gi|268603823|ref|ZP_06137990.1| GTP-binding protein [Neisseria gonorrhoeae PID1]
 gi|268587954|gb|EEZ52630.1| GTP-binding protein [Neisseria gonorrhoeae PID1]
          Length = 392

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 71/213 (33%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDV 244
             +   + I  LK  +++   Q  L    R   +I    ++G++N GKSSLFN L K  +
Sbjct: 180 DRRLTAHRINALKKQLANLKKQRALRRKSRESGRIKTFALVGYTNVGKSSLFNRLTKSGI 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 240 YAKDQLFATLDTTARRLYISPACSIILTDTVGFVSDLPHKLISAFSATLEETVQADVLLH 299

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 300 VVDAAAPNSGQQIEDVENVLQEIHAHDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 360 RISVAENTGIDALREAIAEYCAAAPNTDETEMP 392


>gi|296876213|ref|ZP_06900267.1| GTP-binding protein HflX [Streptococcus parasanguinis ATCC 15912]
 gi|296432924|gb|EFH18717.1| GTP-binding protein HflX [Streptococcus parasanguinis ATCC 15912]
          Length = 415

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 96/275 (34%), Gaps = 26/275 (9%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  +    +   +    +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKVVEKNRETLREKRLESPVFKIGLIGYTNAGKSTIMNQLTSKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKSIHLTGNLQVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPNHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSIL 362
            K             I  + +  K+D  + +T        IS+ +    E+L   +   L
Sbjct: 296 EKTVLSIMKDLDMLEIPRLTLYNKADKVADFTPTQTPFSLISARSETAREDLQALLLEKL 355

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397
              F      +P  K +  H  +TV  ++     E
Sbjct: 356 RELFVPFTIRVPFSKSYRTHDLETVAIIDQREFEE 390


>gi|224539105|ref|ZP_03679644.1| hypothetical protein BACCELL_04006 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519269|gb|EEF88374.1| hypothetical protein BACCELL_04006 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 823

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 21/180 (11%)

Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263
              + +  LG+  R    + ++G+ N GK+SLFN  +      V +  G T D      +
Sbjct: 98  EEELKRIALGK--RRTINVALVGNPNCGKTSLFNIASGSHEH-VGNYSGVTVDAKEGHFN 154

Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFP 317
            +GY  +I D  G         +E   R  +  E  D+++ + + ++ +           
Sbjct: 155 FQGYHFRIVDLPGTYSLSAYSPEEMYVRHHIIDETPDIVINVVDSSNLERNLYLTTQLID 214

Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLI------------SSFTGEGLEELINKIKSILSNK 365
            N+  +      D         D++              S TG+G+E+L + + SI    
Sbjct: 215 MNVRMVMALNMYDELEASGNTLDYMKLSELFGVPMVPTVSRTGKGIEDLFHVVISIYEGA 274


>gi|145629133|ref|ZP_01784932.1| GTP-binding protein Era [Haemophilus influenzae 22.1-21]
 gi|144978636|gb|EDJ88359.1| GTP-binding protein Era [Haemophilus influenzae 22.1-21]
          Length = 97

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280
           I I+G  N GKS+L N +  + ++I +    TTR  +        Y     DT G+  E 
Sbjct: 13  IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72

Query: 281 DDIVEKEGIKRTFLEVENADLILL 304
              + +   +     + + DLI+L
Sbjct: 73  KRAINRLMNRAASSAIGDVDLIIL 96


>gi|254425321|ref|ZP_05039039.1| GTPase, putative [Synechococcus sp. PCC 7335]
 gi|196192810|gb|EDX87774.1| GTPase, putative [Synechococcus sp. PCC 7335]
          Length = 484

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 72/189 (38%), Gaps = 27/189 (14%)

Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226
             R+ +   +D    +      S++ L     +K+ I        + ++  +  ++ + G
Sbjct: 15  QARTSLRQAIDRYIPQLKMTQLSEQELTRQAAVKSGIDRL--SALMNKLDSSLLRVAVFG 72

Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL------------DLEGYLVK--IS 272
             + GKS++ NAL  +++     + G T+   ++              D     +K  + 
Sbjct: 73  LVSRGKSAVINALLGENILETGPLNGVTQWPRSVYWVPTDSRSHFGQSDFGRQPLKLELI 132

Query: 273 DTAGIRETDDIVEKEGI-KRTFLEVENADLILLLK--EINSKKEISFPK----NIDFIFI 325
           DT G+    D +E +   K      + ADLIL +   +I   + ++  +        + +
Sbjct: 133 DTPGL----DEIEGQSRSKMAQEVAQQADLILFVVSGDITQTEYLALQELYATRKPLLLV 188

Query: 326 GTKSDLYST 334
             K DLY  
Sbjct: 189 FNKVDLYPE 197


>gi|15594988|ref|NP_212777.1| ribosomal biogenesis GTPase [Borrelia burgdorferi B31]
 gi|216264619|ref|ZP_03436611.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia burgdorferi
           156a]
 gi|221217948|ref|ZP_03589415.1| GTP-binding protein [Borrelia burgdorferi 72a]
 gi|223889457|ref|ZP_03624043.1| GTP-binding protein [Borrelia burgdorferi 64b]
 gi|225548890|ref|ZP_03769867.1| GTP-binding protein [Borrelia burgdorferi 94a]
 gi|225549956|ref|ZP_03770917.1| GTP-binding protein [Borrelia burgdorferi 118a]
 gi|226320358|ref|ZP_03795927.1| GTP-binding protein [Borrelia burgdorferi 29805]
 gi|226321341|ref|ZP_03796868.1| GTP-binding protein [Borrelia burgdorferi Bol26]
 gi|2688581|gb|AAC67000.1| conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|215981092|gb|EEC21899.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia burgdorferi
           156a]
 gi|221192254|gb|EEE18474.1| GTP-binding protein [Borrelia burgdorferi 72a]
 gi|223885143|gb|EEF56247.1| GTP-binding protein [Borrelia burgdorferi 64b]
 gi|225369415|gb|EEG98867.1| GTP-binding protein [Borrelia burgdorferi 118a]
 gi|225370493|gb|EEG99929.1| GTP-binding protein [Borrelia burgdorferi 94a]
 gi|226233137|gb|EEH31889.1| GTP-binding protein [Borrelia burgdorferi Bol26]
 gi|226234221|gb|EEH32933.1| GTP-binding protein [Borrelia burgdorferi 29805]
 gi|312149531|gb|ADQ29602.1| GTP-binding protein [Borrelia burgdorferi N40]
          Length = 279

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 100/264 (37%), Gaps = 14/264 (5%)

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RA +  K +L +A  + +++ +      +  +     +  +             + I  
Sbjct: 13  KRALDLIKNNLQKANIVLEILDARAPFSSKNPLTEKITKNQAKIILLHKSDVAQINEIIK 72

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
              + E        S      +     DI   ++  K  +  +   K++I+G  N GKSS
Sbjct: 73  WKKYFENLGNTVIISNIYKKGMRKQIIDIIKKLAIVKKIKNYKEKIKVLIIGVPNVGKSS 132

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           + N L+ K  A V + PG T+++  + ++ E   + + D  GI   + + +    K   L
Sbjct: 133 IINLLSGKKSAKVANKPGYTKNIQIVKINEE---INLFDMPGILWHNLVDQSIAKKLAIL 189

Query: 295 EV------ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           ++      +N DL L L EI  +   +       I+     D+   + +          G
Sbjct: 190 DMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKAR-----KLIG 244

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           +  E  + K   IL  +F++  F 
Sbjct: 245 KKNELNLEKASKILIKEFREGKFG 268


>gi|295426356|ref|ZP_06819011.1| GTP-binding protein HflX [Lactobacillus amylolyticus DSM 11664]
 gi|295063961|gb|EFG54914.1| GTP-binding protein HflX [Lactobacillus amylolyticus DSM 11664]
          Length = 421

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 84/215 (39%), Gaps = 26/215 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
             + + +   I  +K ++ +  SQ ++    RN     K+ ++G++NAGKS+  N L K 
Sbjct: 162 EMNRRTIGQQISAIKKELKAVASQEEIKASRRNQSCIPKVALVGYTNAGKSTTMNGLLKA 221

Query: 243 -------DVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFL 294
                      V ++   T D     +D++  +   +SDT G          E  K T  
Sbjct: 222 FSDEGANKQVFVKNMLFATLDTSVRRIDMKDNFSFILSDTVGFISKLPHNLVESFKATLQ 281

Query: 295 EVENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTY---TEEY 339
           E ++ADL++ + + +    I               K+I  I    K+D         E  
Sbjct: 282 EAKDADLLVNVVDASDPNMIQMVRTTQQVLGEIGVKDIPTITAYNKADKTDRNYPQIEGD 341

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D L S+     ++ L N I   + + + K    +P
Sbjct: 342 DILYSAIDERSIKLLANLIVKRVFSNYDKFNLKLP 376


>gi|238762798|ref|ZP_04623767.1| GTP-binding protein era [Yersinia kristensenii ATCC 33638]
 gi|238699103|gb|EEP91851.1| GTP-binding protein era [Yersinia kristensenii ATCC 33638]
          Length = 284

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 68/190 (35%), Gaps = 22/190 (11%)

Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGI 289
           GKS+L N L  + ++I +  P TTR  +        Y     DT G+  E    + +   
Sbjct: 2   GKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEEKRAINRLMN 61

Query: 290 KRTFLEVENADLILLLKEI---NSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL 342
           +     + + +L++ + E     +  E+   K        +    K D  +  T+   H+
Sbjct: 62  RAASSSLGDVELVIFVVEGTNWTADDEMVVNKLRSLQCPVLLAINKVDNVTDKTKLLPHI 121

Query: 343 I--------------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388
                          S+  G  ++ + + ++  +       P    + +   +  S+ +R
Sbjct: 122 QFLSQQMNFLDVVPISAEKGMNVDTIASIVRKHMPEAVHHFPEDYITDRSQRFMASEIIR 181

Query: 389 YLEMASLNEK 398
              M  L E+
Sbjct: 182 EKLMRFLGEE 191


>gi|224532989|ref|ZP_03673597.1| GTP-binding protein [Borrelia burgdorferi WI91-23]
 gi|224512106|gb|EEF82499.1| GTP-binding protein [Borrelia burgdorferi WI91-23]
 gi|312148166|gb|ADQ30825.1| GTP-binding protein [Borrelia burgdorferi JD1]
          Length = 279

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 100/264 (37%), Gaps = 14/264 (5%)

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RA +  K +L +A  + +++ +      +  +     +  +             + I  
Sbjct: 13  KRALDLIKNNLQKANIVLEVLDARAPFSSKNPLTEKITKNQAKIILLHKSDVAQINEIIK 72

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
              + E        S      +     DI   ++  K  +  +   K++I+G  N GKSS
Sbjct: 73  WKKYFENLGNTVIISNIYKKGMRKQIIDIIKKLAIVKKIKNYKEKIKVLIIGVPNVGKSS 132

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           + N L+ K  A V + PG T+++  + ++ E   + + D  GI   + + +    K   L
Sbjct: 133 IINLLSGKKSAKVANKPGYTKNIQIVKINEE---INLFDMPGILWHNLVDQSIAKKLAIL 189

Query: 295 EV------ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           ++      +N DL L L EI  +   +       I+     D+   + +          G
Sbjct: 190 DMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKAR-----KLIG 244

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           +  E  + K   IL  +F++  F 
Sbjct: 245 KKNELNLEKASKILIKEFREGKFG 268


>gi|124025484|ref|YP_001014600.1| GTPase SAR1 and related small G proteins [Prochlorococcus marinus
           str. NATL1A]
 gi|123960552|gb|ABM75335.1| GTPase SAR1 and related small G proteins [Prochlorococcus marinus
           str. NATL1A]
          Length = 517

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKI 271
           E+ R    +V+ G  ++GK+SL  AL KK V  V+   G+TR   T  L L+G    ++I
Sbjct: 118 ELDRGDIILVVFGIGSSGKTSLIRALLKKIVGKVSPEMGSTRGKETFRLKLKGLTRGIRI 177

Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFI 325
            DT GI E+     +E  K   +E   +DL+L++ E + + E +             + +
Sbjct: 178 IDTPGILESGRGG-REREKSALMEARKSDLMLVVIEGDLRSEETRTIRSLSKLGKRLLLV 236

Query: 326 GTKSDLYSTYTEE 338
             K DL     E+
Sbjct: 237 LNKIDLRGESEEK 249


>gi|91788464|ref|YP_549416.1| GTP-binding protein, HSR1-like protein [Polaromonas sp. JS666]
 gi|91697689|gb|ABE44518.1| GTP-binding protein HflX [Polaromonas sp. JS666]
          Length = 386

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 73/211 (34%), Gaps = 17/211 (8%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           E ++Q  L+        + L  +W                  ++ ++      + +    
Sbjct: 115 EGKLQVELARLQYVS--TRLVRRWSHLERQTGGAGVRGGPGEKQIELDKRMIGDAIKRTK 172

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +       +     RN + I ++G++NAGKS+LFNAL K   A   D    T D 
Sbjct: 173 ERLGKVKKQRQTQRKQRERRNSFTISLVGYTNAGKSTLFNALVKA-RAYAADQLFATLDT 231

Query: 258 LTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315
            T  L L      V +SDT G          +    T  E  +ADL+L + + ++   + 
Sbjct: 232 TTRQLYLGDAARSVSLSDTVGFIRDLPHGLIDAFAATLQEAADADLLLHVVDGSNPDYLE 291

Query: 316 FPK------------NIDFIFIGTKSDLYST 334
             +            ++  I +  K D    
Sbjct: 292 QIEQVQRVLAEIGAADVPQILVFNKLDAVEK 322


>gi|295397719|ref|ZP_06807791.1| GTP-binding protein HflX [Aerococcus viridans ATCC 11563]
 gi|294974048|gb|EFG49803.1| GTP-binding protein HflX [Aerococcus viridans ATCC 11563]
          Length = 410

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 109/266 (40%), Gaps = 21/266 (7%)

Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190
           +  + ++  E + ++++      L        + L+ +   I        + +      +
Sbjct: 106 IFAMRATSKEGKLQVALAQNE-YLLPRLAGNYNALSRLGGGIGTRGPGETKIEQDRRVLR 164

Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250
             +  I     ++  H S+ +        +++ ++G++NAGKS++ NAL++ D  +  + 
Sbjct: 165 NEIQRIKGELKEVEKHRSRTRENREKGAIFQLGLIGYTNAGKSTITNALSQAD-TLEENQ 223

Query: 251 PGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309
              T   LT    L  +  + I+DT G  +       +    T  E    DL+L++ + +
Sbjct: 224 LFATLTPLTRVFSLNNHFQMSITDTVGFIQDLPPQIIDSFHSTLEESRQVDLMLIVIDAS 283

Query: 310 ----SKKEISFPK--------NIDFIFIGTKSDLYSTYTE------EYDHLISSFTGEGL 351
               S++E             +I  +F+  K D  +   +      + +  IS+ + E +
Sbjct: 284 SPYASEQEAVVLDTLKQLDMLDIPHLFVYNKMDKVANTNQAILAFNQPNVQISAKSEESI 343

Query: 352 EELINKIKSILSNKFKKLPFSIPSHK 377
           EEL+  I + L +++ ++  ++   +
Sbjct: 344 EELLAAIVNELKDQYDEVEIAVSPSQ 369


>gi|261392470|emb|CAX50019.1| putative GTPase [Neisseria meningitidis 8013]
          Length = 369

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 70/213 (32%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDV 244
             + + + I  LK  +++   Q  L    R         ++G++N GKSSLFN L K  +
Sbjct: 157 DRRLIAHRINALKKQLANLKKQRALRRKSRESGTIKTFALVGYTNVGKSSLFNRLTKSGI 216

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 217 YAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDLPHKLISAFSATLEETAQADVLLH 276

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 277 VVDAAAPNSGQQIEDVENVLREIHAGDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 336

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 337 RISVAENTGIDALREAIAESCAAAPNTDETEMP 369


>gi|254487127|ref|ZP_05100332.1| GTP-binding protein Era [Roseobacter sp. GAI101]
 gi|214043996|gb|EEB84634.1| GTP-binding protein Era [Roseobacter sp. GAI101]
          Length = 302

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ + ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGASQLVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----------NIDFIFIG 326
           + +    +++  +   +    +AD+++LL E N        +                  
Sbjct: 63  LFQPRRRLDRAMVAAAWGGAADADVVVLLIEANRGITEGVERILEGLDGIGEGRKVALAI 122

Query: 327 TKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
            K D         L     E +    +          ++ +++ L+ +  + P+  P  +
Sbjct: 123 NKIDRVEAPVLLGLSKEINERFPFAETFMISAERGHGVDALRTWLAGELPESPWLYPEDQ 182


>gi|324991626|gb|EGC23559.1| GTP-binding protein HflX [Streptococcus sanguinis SK353]
 gi|325687692|gb|EGD29713.1| GTP-binding protein HflX [Streptococcus sanguinis SK72]
 gi|332360957|gb|EGJ38761.1| GTP-binding protein HflX [Streptococcus sanguinis SK1056]
          Length = 412

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 25/235 (10%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKAVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNCLTSKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T +++L G L V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKNINLSGQLNVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDSHHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKI 358
            K            +I  + +  K+D    +T     + + S   +    L+ ++
Sbjct: 296 EKTVLDIMNELDMLDIPRLTLYNKADKTEDFTPTLTPYSLISAKADNSRALLQQV 350


>gi|257051913|ref|YP_003129746.1| GTP-binding proten HflX [Halorhabdus utahensis DSM 12940]
 gi|256690676|gb|ACV11013.1| GTP-binding proten HflX [Halorhabdus utahensis DSM 12940]
          Length = 439

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 79/227 (34%), Gaps = 40/227 (17%)

Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGYK-IVILGHSNAGKSS 234
           F    +      +++ N I  +++++       + +  +   +G+  + + G++NAGKS+
Sbjct: 149 FMGLGEYDESREQDIKNRISRIRDELEKIERTDEHRREQRRESGFDLVALAGYTNAGKST 208

Query: 235 LFNALAKK--------------DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           L   LA+               + A   D   TT    T   D +   V ++DT G    
Sbjct: 209 LLRRLAEDLDVDENEDVHPDLDETAESEDRLFTTLGTTTRRADFDRRDVLVTDTVGFISD 268

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTK 328
                 E  K T   V  ADL+LL+ ++    E    K                + +  K
Sbjct: 269 LPHWLVESFKSTLGSVYQADLVLLVVDVGESVESIREKLVTAHDTLYERNEAPILTVLNK 328

Query: 329 SDLYSTYTEEY-----------DHLISSFTGEGLEELINKIKSILSN 364
            D       +               +S+ TGE ++ L  +I   L  
Sbjct: 329 IDTVEAAELDRKREALSALAPNPVAVSARTGENVDALRERIDESLPE 375


>gi|78187214|ref|YP_375257.1| GTP-binding protein HflX [Chlorobium luteolum DSM 273]
 gi|78167116|gb|ABB24214.1| GTP-binding protein HflX [Chlorobium luteolum DSM 273]
          Length = 435

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 95/259 (36%), Gaps = 31/259 (11%)

Query: 135 ISSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           I +++   +    +  +   L  L GQW    TH+             E       + V 
Sbjct: 120 IRAKSHQAKMQVELAQLEYLLPRLSGQW----THLSKQKGGIGTKGPGETQIETDRRLVR 175

Query: 194 NDILFLKNDIS--SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
           N I  LK  +   S     + G   R+  ++ ++G++NAGKS+L N L     A   D  
Sbjct: 176 NRIASLKQKLRDVSLQHDTQTGSR-RSVPRVALVGYTNAGKSTLMNQLCPDAGAYAEDRL 234

Query: 252 GTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D  T  L+L+   LV +SDT G          E  + T  EV  AD +L + +++ 
Sbjct: 235 FATLDTRTRRLELKINKLVLLSDTVGFIRKLPHTLVESFRSTLDEVLQADFLLHVVDLSH 294

Query: 311 K-------------KEISFPKNIDFIFIGTKSDLYSTYTEEYD--------HLISSFTGE 349
                         +EI   K+   I +  K D  +  +   D          IS+  G 
Sbjct: 295 PGFEEQMQVVQSTLREIGV-KHQHIIDVFNKIDALADPSVLRDLRARYPDAVFISAARGI 353

Query: 350 GLEELINKIKSILSNKFKK 368
            L  L   I   +   + +
Sbjct: 354 NLTALRECIAEHVGRDYSE 372


>gi|71908333|ref|YP_285920.1| GTP-binding protein, HSR1-related [Dechloromonas aromatica RCB]
 gi|71847954|gb|AAZ47450.1| GTP-binding protein HflX [Dechloromonas aromatica RCB]
          Length = 468

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 97/292 (33%), Gaps = 31/292 (10%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++ +   R        G ++    +                     E       +++ + 
Sbjct: 155 NARSRAARAQVEIARLGYMAPRLREAAKLAGPQGRQRSGAGGRGGGESHTELDRRKIRDR 214

Query: 196 ILFLKNDISS---HISQGKLGEIIRNGYK-IVILGHSNAGKSSLFNALAKKDVAIVTDIP 251
           I  L+ +I +        +     R G   + ++G++NAGKS+L  AL   +V +V +  
Sbjct: 215 IAELQQEIVAMDVERKTQRARRQERQGLAGVALVGYTNAGKSTLMRALTGSEV-LVANKL 273

Query: 252 GTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310
             T D     L  E    V +SDT G  +          K T  E  +A L+L + + + 
Sbjct: 274 FATLDTTVRTLHPESVPRVLVSDTVGFIKNLPHGLVASFKSTLEEALDASLLLHVIDASD 333

Query: 311 ---KKEISFPKN---------IDFIFIGTKSD----------LYSTYTEEYDHL--ISSF 346
              ++++    +         +  I +  K D            +   E+Y     +S+ 
Sbjct: 334 PGFERQLQVTDDVLHEIGADAVPRIRVFNKIDHVGDSEAQAECEAALREKYPDCVVMSAR 393

Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY-HLSQTVRYLEMASLNE 397
             + +  L   I S       +    +P   + L   L  +   LE  +  E
Sbjct: 394 RPDEVARLRLTIISFFQQGLVEAELFLPWSAQQLRGELYASCEVLEERADEE 445


>gi|330507705|ref|YP_004384133.1| GTP-binding protein [Methanosaeta concilii GP-6]
 gi|328928513|gb|AEB68315.1| GTP-binding protein [Methanosaeta concilii GP-6]
          Length = 320

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 75/193 (38%), Gaps = 19/193 (9%)

Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +   +   N   + +   K+  I      I+I G+ N GKSS    +       V   P 
Sbjct: 124 IEKDMLFLNSARNLLR--KMPTIDPEAPTILIAGYPNVGKSSFIIRITGA-KPEVASYPF 180

Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD-LILLLKEINS- 310
           TTR ++      +    ++ DT G+ +       E  ++T   + +   ++L + + +  
Sbjct: 181 TTRGIIVGHFVRDDKRYQVVDTPGLLDRPMSERNEIERQTVAALSHLQGVVLYILDPSEH 240

Query: 311 -----KKEISFPKN------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359
                  ++   ++      +  + +  K D+           +S+ TGEG+  ++ ++ 
Sbjct: 241 CGYPLDSQLRLAEDLSNWIRLPMLIVANKVDIKRYSDLA---EMSTETGEGVSLVLERLI 297

Query: 360 SILSNKFKKLPFS 372
           ++L +K   L  S
Sbjct: 298 ALLDSKGDGLAGS 310


>gi|291619089|ref|YP_003521831.1| HflX [Pantoea ananatis LMG 20103]
 gi|291154119|gb|ADD78703.1| HflX [Pantoea ananatis LMG 20103]
          Length = 426

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 97/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+      +   + ++G++NAGKS+LFNA+   +V    D    T
Sbjct: 173 QILSRLERVEKQREQGRQARAKADVPTVSLVGYTNAGKSTLFNAITSANV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     L++     V ++DT G             K T  E   A L++ + +      
Sbjct: 232 LDPTLRRLNVADVGEVVLADTVGFIRHLPHDLVAAFKATLQETRQATLLMHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N   E      I  + I  K D+   +    D           +S+ +G G+ 
Sbjct: 292 NENIGAVNEVLEEIDADEIPTLLIMNKIDMLDGFEPRIDRDEENMPVRVWLSAQSGVGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            L   +   LS +  +    +P      R  ++  Q + 
Sbjct: 352 LLWQALSERLSGEIAQYDLRLPPEAGRLRSRFYQLQAIE 390


>gi|268592767|ref|ZP_06126988.1| putative GTP-binding protein [Providencia rettgeri DSM 1131]
 gi|291311544|gb|EFE51997.1| putative GTP-binding protein [Providencia rettgeri DSM 1131]
          Length = 287

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 78/196 (39%), Gaps = 17/196 (8%)

Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269
             L ++I     I ++G + AGKSSL NAL +  ++ V+++ G TR     ++ +  + +
Sbjct: 21  SHLNKLINYSPTIGLMGKTGAGKSSLINALFQSALSPVSNVSGCTRQAQLFNMTINNHTL 80

Query: 270 KISDTAGIRET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----------- 317
              D  G+ E+ +   E   + R    +   DLI+ + + + +   S             
Sbjct: 81  TFIDLPGVGESLERDKEYHQLYRNL--LPELDLIIWVLKADDRAWSSDEQCYRFLTEQCG 138

Query: 318 -KNIDFIFIGTKSDLYSTYT--EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
            ++  F+F+  ++D        +E++H  S      LE     + +        +  S  
Sbjct: 139 YQSERFLFVLNQADKIEPCRQWDEHNHQPSLEQVANLELKQQAVITAFKPHHPVMTVSAA 198

Query: 375 SHKRHLYHLSQTVRYL 390
              +      Q ++ L
Sbjct: 199 EGFQLTELAEQLIQAL 214


>gi|158320032|ref|YP_001512539.1| GTP-binding protein HSR1-related [Alkaliphilus oremlandii OhILAs]
 gi|158140231|gb|ABW18543.1| GTP-binding protein HSR1-related [Alkaliphilus oremlandii OhILAs]
          Length = 416

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 24/236 (10%)

Query: 186 NFSSKEVLNDILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242
               +++   I  L  ++       +  +      N   + ++G++NAGKSS+ NA+  +
Sbjct: 158 ELDRRKIEERIAALNKELEILKGQRTTQRKERKESNIPNVALVGYTNAGKSSIMNAMMDQ 217

Query: 243 ------DVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLE 295
                       D+   T +     + + G     +SDT G          +  + T  E
Sbjct: 218 SQHKDNKKVFEKDMLFATLETSVRHIKVSGNKSFLLSDTVGFVSDLPHNLVKAFRSTLEE 277

Query: 296 VENADLILLLKEINS---KKEISFPK---------NIDFIFIGTKSDLYSTYTEEYD-HL 342
           V  ADL++ + +I++   + +I   K         +I  I+   K DL     E  +   
Sbjct: 278 VCEADLLIHVVDISNPHYEAQIDVTKETLKQIGADHIPVIYAYNKIDLVDETLEHKEGIY 337

Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLEMASLNE 397
           IS+    G+E+LIN I   +     +    IP    + + + +Q    L+ A +NE
Sbjct: 338 ISAKKNRGIEKLINLICDEVFTDRIQCTMLIPYDDVKAVPYFNQNANVLDTAYVNE 393


>gi|300704408|ref|YP_003746011.1| GTP-binding protein HflX [Ralstonia solanacearum CFBP2957]
 gi|299072072|emb|CBJ43404.1| GTP-binding protein hflX, GTPase activity [Ralstonia solanacearum
           CFBP2957]
          Length = 417

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 74/213 (34%), Gaps = 29/213 (13%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + +      L  ++     Q       R   + + + ++G++NAGKS+LFNAL K 
Sbjct: 165 ELDRRMLDERAKRLSAELDRLQRQHDTQRRSRSRNDAFSVSLVGYTNAGKSTLFNALTKA 224

Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301
                 +    T D  +  L L+G   V +SDT G             + T  E  +AD+
Sbjct: 225 -RTYAANQLFATLDTTSRRLYLDGLGNVVLSDTVGFIRDLPTQLVAAFRATLEETVHADV 283

Query: 302 ILLLKEINSKKEISFPKNIDF------------IFIGTKSDLYSTYTEEYD--------- 340
           +L + +  S  +    + +D             I +  K D       +           
Sbjct: 284 LLHVVDAASAVKHEQMEQVDRVLAEIDASGIPQILVMNKIDAAEELRTQGPRIERDEAGA 343

Query: 341 ---HLISSFTGEGLEELINKIKSILSNKFKKLP 370
                +S+  G GLE L   +        ++ P
Sbjct: 344 VRRVFVSALEGAGLELLREALVETAIRLRERPP 376


>gi|254468036|ref|ZP_05081442.1| GTP-binding proten HflX [beta proteobacterium KB13]
 gi|207086846|gb|EDZ64129.1| GTP-binding proten HflX [beta proteobacterium KB13]
          Length = 378

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 81/232 (34%), Gaps = 20/232 (8%)

Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206
           +  +    + L   W                  ++ ++     +  +  +      ++  
Sbjct: 128 LAQLEYLSTRLVRGWTHLERQKGGIGVRGGPGEKQIELDRRMLRVRVKQLKERLKKLTKQ 187

Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266
               +        + + I+G++NAGKS+LFN L K+ +     +  T             
Sbjct: 188 RDMQRQRRRKSGVFTVAIVGYTNAGKSTLFNELTKQKIYAADQLFATLDTTSRKLFIPPS 247

Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------- 315
             + ISDT G  +       E  K T  E  +ADL+L + +  ++++             
Sbjct: 248 TSLVISDTVGFIKNLPTNLIESFKSTLEESTSADLLLHVVDSTNEEKKEHIDQVNRILKE 307

Query: 316 -FPKNIDFIFIGTKSD----LYSTYTEEYD----HLISSFTGEGLEELINKI 358
                +D I I  + D    L     +EY       +S+ TG+G+E L   +
Sbjct: 308 IHADQVDQILILNQIDKNNSLPQKDIDEYGRIKRIELSAKTGQGIEFLKEAL 359


>gi|319947214|ref|ZP_08021448.1| GTP-binding protein HflX [Streptococcus australis ATCC 700641]
 gi|319747262|gb|EFV99521.1| GTP-binding protein HflX [Streptococcus australis ATCC 700641]
          Length = 416

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 97/268 (36%), Gaps = 26/268 (9%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++ + S +  + DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNSRSVRNQITDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  +    +   +  + +KI ++G++NAGKS++ NAL  K      ++   T D 
Sbjct: 177 RQLKVVEKNREVVREKRLESSVFKIGLIGYTNAGKSTIMNALTSKAQYEADELFA-TLDA 235

Query: 258 LTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T  + L G   V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKSIHLTGNLQVTLTDTVGFIQDLPTELVTSFKSTLEESKNVDLLVHVIDASDPNHGEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSIL 362
            K             I  + +  K+D    +T         S+   +   +L + +   +
Sbjct: 296 EKTVLQIMKDLEMLEIPRLTLYNKADKVKDFTPTQTPYRLVSAKDPDSRSKLQDILLEKM 355

Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYL 390
              F+     +P  + + +H  +T+  L
Sbjct: 356 QELFQSFTLQVPFEQAYRFHELETMAIL 383


>gi|319401407|gb|EFV89617.1| GTP-binding proten HflX [Staphylococcus epidermidis FRI909]
          Length = 413

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 93/249 (37%), Gaps = 17/249 (6%)

Query: 135 ISSETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193
           + + +     ++ +  +   L          L+ +   I        + ++     +  +
Sbjct: 121 LRARSREGKLQVELAQLD-YLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRM 179

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
           N+I      +  H  + +        ++I ++G++NAGKSS FN LA ++     +I   
Sbjct: 180 NEIKHQLKTVVDHRERYRNKREQNQVFQIALVGYTNAGKSSWFNVLANEE-TYEKNILFA 238

Query: 254 TRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
           T D  T  + + EG+ + ISDT G  +          K T  E + AD+++ + + +  +
Sbjct: 239 TLDPKTRQIQVNEGFNLIISDTVGFIQKLPTTLVAAFKSTLEEAKGADILMHVVDASHSE 298

Query: 313 ------------EISFPKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIK 359
                             +I  + I  K DL +   +         F     E    K+K
Sbjct: 299 YRTQIDTVNQIINDLEMDHIPQVVIFNKKDLCNEQMDVPVSKSAHVFVSSRDENDKEKVK 358

Query: 360 SILSNKFKK 368
           +++  + K 
Sbjct: 359 NLVIQEIKN 367


>gi|157150665|ref|YP_001450282.1| GTP-binding protein HflX [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075459|gb|ABV10142.1| GTP-binding protein HflX [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 412

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 81/213 (38%), Gaps = 24/213 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKAVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNCLTSKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T +++L G L V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKNINLSGQLNVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPHHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTE 337
            K            +I  + +  K+D    +T 
Sbjct: 296 EKTVLDIMKELDMLDIPRLTLYNKADKAEDFTP 328


>gi|58332168|ref|NP_001011236.1| GTP binding protein 5 (putative) [Xenopus (Silurana) tropicalis]
 gi|56556285|gb|AAH87807.1| GTP binding protein 5 [Xenopus (Silurana) tropicalis]
 gi|89272419|emb|CAJ82811.1| GTP binding protein 5 [Xenopus (Silurana) tropicalis]
          Length = 405

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 28/186 (15%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274
           ++    + ++G  NAGKSSL   L+    A V   P TT +     +    Y  + ++DT
Sbjct: 223 LKTMAHVGMVGFPNAGKSSLLRLLSNARPA-VAAYPFTTLNPHVGIIKYRDYVQIAVADT 281

Query: 275 AGIRETDDIVEKEGIKRTF-LEVENADLILLLKEINSKKEISFPK--------------N 319
            GI   D   +  G+   F   +E   ++L + +++ K+  +                  
Sbjct: 282 PGI--IDGAHQNRGLGFAFLRHIERCRILLFVLDLSHKEPWAQLASLRYELEQYNEDLVQ 339

Query: 320 IDFIFIGTKSDLYSTY---------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
              + +  K DL +           T+     +S+ TGE  EELI  ++ +     +   
Sbjct: 340 RPHVIVANKLDLPAARETLRRLRHETDSNVIGVSALTGENAEELILHLRELYDGHRQHSK 399

Query: 371 FSIPSH 376
             + + 
Sbjct: 400 DPLAAW 405


>gi|189347079|ref|YP_001943608.1| GTP-binding proten HflX [Chlorobium limicola DSM 245]
 gi|189341226|gb|ACD90629.1| GTP-binding proten HflX [Chlorobium limicola DSM 245]
          Length = 434

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 102/277 (36%), Gaps = 27/277 (9%)

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLS-MEGMSGELSSLYGQWIDKLTHIRSFIE 173
            +AFE   ID          I +++   +    +  +   L  L GQW    TH+     
Sbjct: 99  EKAFECKVIDRTGLILQIFAIRAKSARAKMQVELAQLEYMLPRLSGQW----THLSKQKG 154

Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH-ISQGKLGEIIRNGYKIVILGHSNAGK 232
                   E       + V N I  LK  + +  +         R+   + ++G++NAGK
Sbjct: 155 GIGTKGPGETQIETDRRLVRNRIASLKRKLRAVSLQHDTQTRGRRSIPGVALVGYTNAGK 214

Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKR 291
           S+L NAL  +  A   +    T D  T  L+L+   LV +SDT G          E  K 
Sbjct: 215 STLMNALCPEAEAFAENRLFATLDTKTRRLELKINKLVLLSDTVGFIRKLPHDLVESFKS 274

Query: 292 TFLEVENADLILLLKEINSK---KEISFPK---------NIDFIFIGTKSDLYSTYTEEY 339
           T  EV  AD +L + + +     +++   +         + + I +  K D         
Sbjct: 275 TLDEVLQADFLLHVIDASHPGFAEQMQVVRQTLKEIGVGHDNIIDVFNKIDALPDSGSLR 334

Query: 340 D--------HLISSFTGEGLEELINKIKSILSNKFKK 368
           +          +S+     L  L + I   L+ +F++
Sbjct: 335 ELRVNYPDAVFVSAAREINLSALKDAIGDHLAQEFRE 371


>gi|288932684|ref|YP_003436744.1| ferrous iron transporter B [Ferroglobus placidus DSM 10642]
 gi|288894932|gb|ADC66469.1| ferrous iron transport protein B [Ferroglobus placidus DSM 10642]
          Length = 625

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 36/228 (15%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           ++++G+ N GKS +F  L  K  A V++ PGTT DV      +    +K+ DT G+    
Sbjct: 14  VLLVGNPNVGKSVIFYELTGK-YATVSNYPGTTVDV--EVGKIRDLNLKVVDTPGMYSFF 70

Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTY 335
            I E+E + +  +    A+LI+ + +  + +       +      + I +    D     
Sbjct: 71  SITEEEVVAKRMILESKANLIVNVVDAKNLERSLPLTLMLIESCKNVILVLNAMDEAERL 130

Query: 336 TEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383
             + D                +   +GL++L  KI+ +   + KK  F +         L
Sbjct: 131 GLKIDVKELEKRLGIPVVPTVAIKRKGLDKLKEKIEELSKIEQKKRIFKLG------DQL 184

Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431
            + ++ +E     E       +A  L         ++G    E+L  +
Sbjct: 185 EEKIKEIESKISGEYPVSKRFLAILL---------LSGDKVAEELTGV 223


>gi|332710888|ref|ZP_08430825.1| small GTP-binding protein domain protein [Lyngbya majuscula 3L]
 gi|332350441|gb|EGJ30044.1| small GTP-binding protein domain protein [Lyngbya majuscula 3L]
          Length = 473

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 14/159 (8%)

Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253
                L+ ++     Q  L ++ +   +I   G  + GKS++ NAL  + +     I G 
Sbjct: 57  EMEALLQTELEVL--QSSLDKLDQGLIRIAAFGLVSRGKSAVINALLGQKILKTGPIHGV 114

Query: 254 TRDVLTIDLD---LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK--EI 308
           T+   ++          L ++ DT G+ E    V+ +        V  ADLIL +   +I
Sbjct: 115 TQWPKSVRWTPSSESEVLFELIDTPGLDEIHGEVKAQM---AREVVSQADLILFVVAGDI 171

Query: 309 NSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHLI 343
              +  +  +        I +  K DLY     E  +  
Sbjct: 172 TRTEYQALCELRQSQKPLILVFNKIDLYPEQDREAIYQQ 210


>gi|332297854|ref|YP_004439776.1| ferrous iron transport protein B [Treponema brennaborense DSM
           12168]
 gi|332180957|gb|AEE16645.1| ferrous iron transport protein B [Treponema brennaborense DSM
           12168]
          Length = 714

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 76/199 (38%), Gaps = 27/199 (13%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278
           YKI + G+ N GK++LFN L   +   V + PG T +       L+GY  V + D  GI 
Sbjct: 3   YKIALAGNPNCGKTTLFNVLTGSNQ-FVGNWPGVTVEKKEGK--LKGYTDVTVMDLPGIY 59

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLY 332
                 ++E + R +L  E  D+IL + +  + +             I  +      D+ 
Sbjct: 60  SLSPYTQEEVVSRNYLVNERPDVILNIIDGTNLERNLYLTTQLAELGIPMVVAVNMMDIV 119

Query: 333 ------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
                       S         IS+  G G+ E + K     +  F     ++    R  
Sbjct: 120 KRNGDVIHKEALSKQIGCPVFEISALKGTGIAEAVAK-----TVDFASKGDAMRYQHRFA 174

Query: 381 YHLSQTVRYLEMASLNEKD 399
             +   + ++E A L++ D
Sbjct: 175 GCVEHALAHIEEAVLHDMD 193


>gi|310657579|ref|YP_003935300.1| bifunctional ferrous iron transporter, protein b/GTP-binding
           protein/membrane protein [Clostridium sticklandii DSM
           519]
 gi|308824357|emb|CBH20395.1| fused ferrous iron transporter, protein B: GTP-binding protein ;
           membrane protein [Clostridium sticklandii]
          Length = 623

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 63/169 (37%), Gaps = 19/169 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + + G+ N+GK++LFNAL       V + PG T +     L  E   + + D  G   
Sbjct: 6   ITMALAGNPNSGKTTLFNALTGA-RQYVGNWPGVTVEKKEGKLKFEDKNLILVDLPGTYS 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS 333
                 +E I + ++  E  D+++ + + ++ +                +      D+  
Sbjct: 65  LSPYSMEEIIAKNYVINEKPDVVVNIVDASNIERNLFLTMQLLELGRPTVIALNMMDVAK 124

Query: 334 TYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370
               E D              I +   EG+ ELI++  +    + + +P
Sbjct: 125 AKGYEIDVTKLSMELGVPVVPIIASKSEGINELISRAITEADVQNQTMP 173


>gi|303235512|ref|ZP_07322124.1| ferrous iron transport protein B [Prevotella disiens FB035-09AN]
 gi|302484311|gb|EFL47294.1| ferrous iron transport protein B [Prevotella disiens FB035-09AN]
          Length = 836

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 87/261 (33%), Gaps = 37/261 (14%)

Query: 164 KLTHIRS-----FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN 218
            L  I +     F + +  ++   +V+  S++  L+    +              +  R 
Sbjct: 81  SLIEIMAVEANYFNKKNEPYNPAIEVEPDSNEAKLSPKEAV-----------AAAKRQRK 129

Query: 219 GYKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
             ++ ++G+ N GK+SLFN  +   +   V +  G T D        E Y +++ D  G 
Sbjct: 130 TIRVALVGNPNCGKTSLFNFASGAHER--VGNYSGVTVDAKYGHATFEDYQIEMVDLPGT 187

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL 331
                   +E   R  L     D+++ + +  + +            N+  +      D 
Sbjct: 188 YSLSAYSPEELYVRKQLVEHTPDIVINVIDAANLERNLYLTTQLIDMNLPMVCALNMFDE 247

Query: 332 YSTYTEEYDHLISS------------FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379
                +  DH   S              G+G+ +L   I      K  K P     H  H
Sbjct: 248 TQQRGDHIDHERLSQLFGVPMIPTVFKNGKGVNDLFETIVQNYEGKEGKHPTYRHIHINH 307

Query: 380 LYHLSQTVRYLEMASLNEKDC 400
            + +   +  ++    +E D 
Sbjct: 308 GHEIENGIAEIQAHLKHELDI 328


>gi|220909819|ref|YP_002485130.1| small GTP-binding protein [Cyanothece sp. PCC 7425]
 gi|219866430|gb|ACL46769.1| small GTP-binding protein [Cyanothece sp. PCC 7425]
          Length = 520

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 99/259 (38%), Gaps = 36/259 (13%)

Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN----GYKIVILGHSNAGKSSL 235
           E+ D    + + V   +  ++++++      +  E+  +     ++IV+ G  +AGK+SL
Sbjct: 85  EKTDAAAENLRAVRRQLAQIEDEVTRQALVARSQELEDSFAYGEFRIVVFGTGSAGKTSL 144

Query: 236 FNALAKKDVAIVTDIPGTT--RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293
            NAL  + V  V+   GTT   +   + L+   + + I+DT GI E   I   E  +   
Sbjct: 145 VNALMGRMVGEVSAPMGTTAVGETYCLPLEGFDWDIYITDTPGILEAG-IAGTEREQMAR 203

Query: 294 LEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYSTYTEEYDHLISSFT 347
                ADL+L + + + ++    P           + I  K D Y               
Sbjct: 204 QLATEADLLLFVLDNDLRQSEYQPLLSLVRMGKRSLLILNKIDRYLEAD----------- 252

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS---------QTVRYLEMASLNEK 398
               + ++N+++  L +  +       +       L            +  +   +   +
Sbjct: 253 ---WQAILNRLRQRLEDWIEPQDVIAIAANPQPVRLETGELLEPDPDIMPLIRRIAGIIR 309

Query: 399 DCGLDIIAENLRLASVSLG 417
             G D++A+N+ L S  L 
Sbjct: 310 SEGEDLVADNILLQSQRLS 328


>gi|195395754|ref|XP_002056499.1| GJ10190 [Drosophila virilis]
 gi|194143208|gb|EDW59611.1| GJ10190 [Drosophila virilis]
          Length = 363

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 89/220 (40%), Gaps = 9/220 (4%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE---IIRNG-Y 220
           +    + IE ++  +++     +    +   +   ++ +     +G+ GE   ++++G  
Sbjct: 3   ILEKIAEIEREIARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGEKGEGFDVLKSGDA 62

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  + GKS++ + L K + +   +   TT   +   ++ +G  +++ D  GI E 
Sbjct: 63  RVALIGFPSVGKSTMLSTLTKTE-SEAANYEFTTLTCIPGVIEYQGANIQLLDLPGIIEG 121

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNIDFIFIGTKSDLYSTYTE 337
               +  G ++       ADL+L++ +       +E+   +         K      + +
Sbjct: 122 AAQGKGRG-RQVIAVARTADLVLMMLDATKPNVHRELLERELESVGIRLNKRKPNIYFKQ 180

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +    +S  +   L     K+  ++ + FK     +   +
Sbjct: 181 KKGGGLSFNSTCALTRCSEKMVQMILHSFKIFNAEVLFRE 220


>gi|189485591|ref|YP_001956532.1| Fe2+-transporter membrane unit [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287550|dbj|BAG14071.1| Fe2+-transporter membrane unit [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 698

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + ++G+ N+GKS++FN+L   +   V + PG T +        +GY V   D  G   
Sbjct: 7   ITVALVGNPNSGKSTIFNSLTGSNQN-VGNYPGITVEKKEGLKKYKGYNVNFIDLPGTYS 65

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE-INSKKEISF-----PKNIDFIFIGTKSDLYS 333
                + E + R FL  E  D+++ + +  N ++ +         ++  I +    D+  
Sbjct: 66  LSAYSDDEVVVRNFLLNEKLDVVVNVIDSANMERNLYLFTQIVELDMPVIMVLNMVDILK 125

Query: 334 TYTEEYDHLISS 345
           ++ +  D  + S
Sbjct: 126 SHGKTVDKKVMS 137


>gi|149911324|ref|ZP_01899945.1| ferrous iron transport protein B [Moritella sp. PE36]
 gi|149805639|gb|EDM65641.1| ferrous iron transport protein B [Moritella sp. PE36]
          Length = 769

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 80/223 (35%), Gaps = 38/223 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
           Y+I+ +G+ N+GK++LFNAL   +   V +  G T D  T      G    ++D  GI  
Sbjct: 3   YQILTIGNPNSGKTTLFNALTGANQ-RVGNWAGVTVDKKTGRYGHAGDEFLLTDLPGIYA 61

Query: 280 TDDIVEKEGIK---RTFLEVEN-ADLILLLKEINSKKEISF------PKNIDFIFIGTKS 329
            D   E   +     +   + + ADLI+ + + +  +   +            + +  K 
Sbjct: 62  LDSSNEVNSVDEMIASKAALNHAADLIINVVDASCLERSLYMTLQLRELGRPMVVVLNKM 121

Query: 330 DLYSTYTEEYDHLI------------SSFTGEGLEELINKIKSILSNKFKKLP------- 370
           D+ +   +  D               S+     + E    + S++    K  P       
Sbjct: 122 DVLARQRQVLDIKKLEKALGCPVLALSANAKNEVNEFKQDLHSLVQKGVKITPLVMNYGP 181

Query: 371 --------FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405
                     I  ++  +   S  VR LE  SL      LDI+
Sbjct: 182 EIESAISELDIHFYEHDVEPRSLAVRALENDSLVSDLLSLDIL 224


>gi|88704495|ref|ZP_01102209.1| GTP-binding protein HflX [Congregibacter litoralis KT71]
 gi|88701546|gb|EAQ98651.1| GTP-binding protein HflX [Congregibacter litoralis KT71]
          Length = 420

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 92/286 (32%), Gaps = 24/286 (8%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  + 
Sbjct: 115 RARTHEGKLQVELAQLRHMSTRLVRGWTH-LERQKGGIGMRGPGETQLETDRRLLRARIK 173

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            I    + +     QG+          + ++G++NAGKS+LFN L    V    D    T
Sbjct: 174 SISARLDRVRRQRGQGRRARQRAELATVALVGYTNAGKSTLFNTLTDAKV-YAADQLFAT 232

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK- 312
            D     L+++    + I+DT G          E  K T  E   ADL+L + +  S+  
Sbjct: 233 LDPTLRRLEVDNLGPLVIADTVGFIARLPHGLVEAFKATLEETREADLLLHVVDAASEDR 292

Query: 313 -----------EISFPKNIDFIFIGTKSDLY--------STYTEEYDHLISSFTGEGLEE 353
                      E    +    + I  K DL               Y   IS+    GL+ 
Sbjct: 293 DDNRHEVQAVLEEIGAEERPVLEIYNKIDLLEMQPRIDRDDEGRPYRVWISAEKKLGLDL 352

Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399
           ++  +   L          +   +  L      +  +E     +  
Sbjct: 353 VMQALAERLGADVMAQDVELRPDQAKLRAALYALGAVENEEFGDDG 398


>gi|325690507|gb|EGD32510.1| GTP-binding protein HflX [Streptococcus sanguinis SK115]
          Length = 412

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 92/244 (37%), Gaps = 30/244 (12%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKAVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNCLTSKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T +++L G L V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKNINLSGQLNVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPHHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEG-----LEELINKI 358
            K            +I  + +  K+D    +T     + + S   +       + L+ ++
Sbjct: 296 EKTVLDIMKELDMLDIPRLTLYNKADKAEYFTPTLTPYSLISAKADNSRAILQQVLLERM 355

Query: 359 KSIL 362
           K I 
Sbjct: 356 KEIF 359


>gi|259502374|ref|ZP_05745276.1| GTP-binding protein HflX [Lactobacillus antri DSM 16041]
 gi|259169636|gb|EEW54131.1| GTP-binding protein HflX [Lactobacillus antri DSM 16041]
          Length = 424

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 92/233 (39%), Gaps = 27/233 (11%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR---NGYKIVILGHSNAGKSSLFNALAKK 242
               + + + I  L++++++     +     R   N     ++G++NAGKS++ N L ++
Sbjct: 165 EMDRRTIQHHITHLRHELAAIDKSEETKRKQRAKSNIPTAALVGYTNAGKSTIMNGLVRR 224

Query: 243 DVAIVT------DIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLE 295
             A+        D+   T D     L L G     +SDT G          E  K T  E
Sbjct: 225 YGAVEDKTVFEKDMLFATLDTSVRRLTLPGRKDFLLSDTVGFVSKLPTNLVESFKSTLAE 284

Query: 296 VENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDL----YSTYTEEY 339
             NADL++ + + +        +            NI  + +  K+D     +     + 
Sbjct: 285 AANADLLIQVIDYSDPNYEEMMQTTKETLKQIGIDNIPMVNVFNKADKTEIEFPVLEGDD 344

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLE 391
             +IS+   E L+ L++ I+  L   + +    +P    + + +L++    L+
Sbjct: 345 QVVISAKQDESLDLLVDVIRKHLFKDYVEAKLLLPFSAGQQVSYLNEHTNILD 397


>gi|167630622|ref|YP_001681121.1| GTP-binding domain protein [Heliobacterium modesticaldum Ice1]
 gi|167593362|gb|ABZ85110.1| GTP-binding domain protein [Heliobacterium modesticaldum Ice1]
          Length = 550

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 85/218 (38%), Gaps = 37/218 (16%)

Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL------------AKKDVAIV 247
            N +  H  + +      +   I ++G++NAGKS+L N L            A +D  + 
Sbjct: 299 LNHVRHHRERLRHSRQRLDLPLISMVGYTNAGKSTLSNLLVSRFAPFGGTSPAGEDK-LF 357

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
             +  TTR  + +  + +   V +SDT G             + T  E+  ADL+L + +
Sbjct: 358 ATLDPTTR-RIRLLAERD---VLLSDTVGFIRKLPHSLVRAFRATLEEIVAADLLLHIVD 413

Query: 308 INSKKEISFPK------------NIDFIFIGTKSDLYST-------YTEEYDHLISSFTG 348
            +    +   +                + +  K D              +    +S++TG
Sbjct: 414 ASHPAAVEQMRTVEAVLAEIGAGEKPILTVLNKIDRLQPGGIDALLRPPDPWVALSAYTG 473

Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQ 385
           EG++ L+ KI  +L +    +   IP  + + ++HL Q
Sbjct: 474 EGVDGLLEKIARLLPDDRVTIDVLIPYDEGKQIHHLYQ 511


>gi|160900445|ref|YP_001566027.1| GTP-binding proten HflX [Delftia acidovorans SPH-1]
 gi|160366029|gb|ABX37642.1| GTP-binding proten HflX [Delftia acidovorans SPH-1]
          Length = 404

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 97/277 (35%), Gaps = 31/277 (11%)

Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197
           E ++Q  L+        + L  +W      +           ++ ++      E +    
Sbjct: 122 EGKLQVELARLQYV--ATRLVRRWTHLERQMGGIGGRGGPGEKQIELDRRMIDESIKRTK 179

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +    +  +        + I ++G++NAGKS+LFNAL K   A   D    T D 
Sbjct: 180 ERLQKVKKQRATQRRRRERHGIFNISLVGYTNAGKSTLFNALVKA-RAYAADQLFATLDT 238

Query: 258 LTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KK 312
            T  L L      V +SDT G          +  + T  E  +ADL+L + + ++    +
Sbjct: 239 TTRQLYLNEAQQSVSLSDTVGFIRDLPHGLVDAFQATLQEAIDADLLLHVVDASNPNFPE 298

Query: 313 EISFPKN---------IDFIFIGTKSD------LYSTYTEEYD--------HLISSFTGE 349
           +I   +          +  + +  K D      L +   ++Y+          +S+ +GE
Sbjct: 299 QIQQVQKVLKEIGAQEVPLVLVFNKLDAVDPERLPAQLQDQYELDGLPVSRVFVSARSGE 358

Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386
           GL +L   +         +   +    +R    +   
Sbjct: 359 GLPQLRQLLAEHALRAEAEHAEAHGGDERDQEEVDGA 395


>gi|226943498|ref|YP_002798571.1| GTP-binding protein Era [Azotobacter vinelandii DJ]
 gi|259645940|sp|C1DQS3|ERA_AZOVD RecName: Full=GTPase Era
 gi|226718425|gb|ACO77596.1| GTP-binding protein Era [Azotobacter vinelandii DJ]
          Length = 300

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 67/209 (32%), Gaps = 31/209 (14%)

Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275
           +R GY + I+G  N GKS+L N +  + +AI +  P TTR  +              DT 
Sbjct: 7   LRCGY-VAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGDVQAIYVDTP 65

Query: 276 GIRETDDIVEKEGIKRTFLEV-----------------ENADLIL---------LLKEIN 309
           G+ + +D      + +T                     E   L+L         +L  +N
Sbjct: 66  GLHKQNDKALNRYMNKTASAALKDVDVVIFVVDRMRWTEEDQLVLDRLQYVQGPVLVAVN 125

Query: 310 SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369
               +     +          L           IS+  G  L+ L   +   L       
Sbjct: 126 KADRLEDKVELLPHLQW----LAQQLPNAEIVPISALHGHNLDTLERLVAGRLPQGEHFF 181

Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
           P    + +   +  ++ VR   M  L  +
Sbjct: 182 PEDQITDRSSRFLAAELVREKIMRQLGAE 210


>gi|160886325|ref|ZP_02067328.1| hypothetical protein BACOVA_04334 [Bacteroides ovatus ATCC 8483]
 gi|156108210|gb|EDO09955.1| hypothetical protein BACOVA_04334 [Bacteroides ovatus ATCC 8483]
          Length = 828

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 8/129 (6%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +     E L + L +K +    ++ GK     R    + ++G+ N+GK+SLFN  +    
Sbjct: 82  EKTVYHEGLPEDLSVKEEDMKRLALGK-----RRTINVALVGNPNSGKTSLFNLASGAHE 136

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
             V +  G T D      D EGY  +I D  G    +    E+  ++R  ++ E  D+I+
Sbjct: 137 -HVGNYSGVTVDAKEGYFDFEGYHFRIVDLPGTYSLSAYTPEEIYVRRHIID-ETPDVII 194

Query: 304 LLKEINSKK 312
            + + ++ +
Sbjct: 195 NVVDSSNLE 203


>gi|145495077|ref|XP_001433532.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124400650|emb|CAK66135.1| unnamed protein product [Paramecium tetraurelia]
          Length = 449

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 58/222 (26%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI-DLDLE-GYLVKISDTAGI 277
             + I+G  N+GKS+  N +  + ++ V++   TT   +     D++ G  +++ DT G+
Sbjct: 105 LAVSIIGPPNSGKSTFLNQMIGEPISAVSNKSNTTVSEIRGVHTDVKSGVQIELVDTPGV 164

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------------------- 316
            +      K  + + +  +E+ +++++L +     +IS                      
Sbjct: 165 TKR-YKFSKHFVTKAWDVIEDTNMVIILIDAIKTLDISMKNVMSRLNKIRVDQEQLRSYF 223

Query: 317 ----------PKNIDFIFIGTKSDLYSTYTE--------------EYDHLISSFTGEGLE 352
                      K I  I +  K DL     +              +    ISS TG G+E
Sbjct: 224 RNEDDFKQSEEKPIPKILVFNKMDLCFNKKKLKWLQTEMEDLGKYDQTFYISSQTGYGME 283

Query: 353 ELINKI-KSILSNKFKKLPFSIPSHKRHL----YHLSQTVRY 389
           EL   +       ++K        +++HL      L Q VR 
Sbjct: 284 ELKQYLYSQSFQCRWKYNE-----NQKHLFTPMDQLEQIVRQ 320


>gi|299146810|ref|ZP_07039878.1| ferrous iron transport protein B [Bacteroides sp. 3_1_23]
 gi|298517301|gb|EFI41182.1| ferrous iron transport protein B [Bacteroides sp. 3_1_23]
          Length = 828

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 8/129 (6%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +     E L + L +K +    ++ GK     R    + ++G+ N+GK+SLFN  +    
Sbjct: 82  EKTVYHEGLPEDLSVKEEDMKRLALGK-----RRTINVALVGNPNSGKTSLFNLASGAHE 136

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
             V +  G T D      D EGY  +I D  G    +    E+  ++R  ++ E  D+I+
Sbjct: 137 -HVGNYSGVTVDAKEGYFDFEGYHFRIVDLPGTYSLSAYTPEEIYVRRHIID-ETPDVII 194

Query: 304 LLKEINSKK 312
            + + ++ +
Sbjct: 195 NVVDSSNLE 203


>gi|260173565|ref|ZP_05759977.1| putative ferrous iron transport protein [Bacteroides sp. D2]
 gi|293372700|ref|ZP_06619082.1| ferrous iron transport protein B [Bacteroides ovatus SD CMC 3f]
 gi|315921833|ref|ZP_07918073.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|292632509|gb|EFF51105.1| ferrous iron transport protein B [Bacteroides ovatus SD CMC 3f]
 gi|313695708|gb|EFS32543.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 828

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 8/129 (6%)

Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244
           +     E L + L +K +    ++ GK     R    + ++G+ N+GK+SLFN  +    
Sbjct: 82  EKTVYHEGLPEDLSVKEEDMKRLALGK-----RRTINVALVGNPNSGKTSLFNLASGAHE 136

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL 303
             V +  G T D      D EGY  +I D  G    +    E+  ++R  ++ E  D+I+
Sbjct: 137 -HVGNYSGVTVDAKEGYFDFEGYHFRIVDLPGTYSLSAYTPEEIYVRRHIID-ETPDVII 194

Query: 304 LLKEINSKK 312
            + + ++ +
Sbjct: 195 NVVDSSNLE 203


>gi|262282441|ref|ZP_06060209.1| GTP-binding protein HflX [Streptococcus sp. 2_1_36FAA]
 gi|262261732|gb|EEY80430.1| GTP-binding protein HflX [Streptococcus sp. 2_1_36FAA]
          Length = 412

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 88/235 (37%), Gaps = 25/235 (10%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKAVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNCLTSKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T +++L G L V ++DT G  +          K T  E  N DL++ + + +       
Sbjct: 236 TTKNINLSGQLNVTLTDTVGFIQDLPTELVSSFKSTLEESRNVDLLVHVIDASDPHHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKI 358
            K            +I  + +  K+D    +T     + + S   +    L+ ++
Sbjct: 296 EKTVLDIMKELDMLDIPRLTLYNKADKSEDFTPTLTPYSLISAKADNSRALLQQV 350


>gi|104774669|ref|YP_619649.1| putative GTP-binding protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423750|emb|CAI98750.1| Putative GTP-binding protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|325126486|gb|ADY85816.1| GTP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 426

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 95/232 (40%), Gaps = 28/232 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAK- 241
             + + +   I  +K+++     Q ++    RN     K+ ++G++NAGKS+  N L K 
Sbjct: 168 EMNRRTIGKQISAIKHELKEISGQEEIKAARRNQSQLPKVALVGYTNAGKSTTMNGLLKA 227

Query: 242 -----KDVAIVT-DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295
                +D  ++  D+   T D     +DL+G+   +SDT G          +  K T  E
Sbjct: 228 FGAGNEDKQVMAKDMLFATLDTSVRRIDLDGFSFILSDTVGFVSKLPHKLVDSFKATLQE 287

Query: 296 VENADLILLLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTY---TEEY 339
            ++ADL++ + +                  EI   K++  I    K+DL        E  
Sbjct: 288 AKDADLLINVVDAADPNMNQMIKTTLEVLDEIGV-KDLPMITAYNKADLTDRNYPQIEGG 346

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYL 390
           D L S+     ++ L   I + L + ++     +P    + L +L Q  R L
Sbjct: 347 DLLYSAVDSASIQALAKLITTRLFSNYQITGLRLPLTAGKDLAYLHQHSRVL 398


>gi|291166319|gb|EFE28365.1| ribosome biogenesis GTP-binding protein YsxC [Filifactor alocis
           ATCC 35896]
          Length = 203

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 31/181 (17%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAG 276
            ++  +G SN GKSS  N L  +  +A V+  PG TR +    ++ + Y V +     A 
Sbjct: 24  LQVAFVGRSNVGKSSAINTLLNRKSIARVSQSPGKTRTINFYSVNEQFYFVDLPGYGYAK 83

Query: 277 IRETDDIVEKEGIKRTFLEVENADLI--LLLKEINSKKEISFPK--------NIDFIFIG 326
           + + +     + ++R F  +E+ +LI   LL +I  + + S  +        NI    I 
Sbjct: 84  LSKEEQEGWGKMMERYF--IESPNLIHLFLLVDIRHEPKDSDVQMYQFAHHWNIPITVIA 141

Query: 327 TKSDLYST----------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370
           TKSD  +                  + E   +ISS    G EE+ +KI  I +    ++ 
Sbjct: 142 TKSDKINRSQLQKNISVIRKKLNLLSGEDVFMISSLKKTGKEEIWSKIIDIFAENGVQID 201

Query: 371 F 371
            
Sbjct: 202 E 202


>gi|260440373|ref|ZP_05794189.1| GTP-binding protein [Neisseria gonorrhoeae DGI2]
 gi|268601485|ref|ZP_06135652.1| GTP-binding protein [Neisseria gonorrhoeae PID18]
 gi|291043670|ref|ZP_06569386.1| GTP-binding protein [Neisseria gonorrhoeae DGI2]
 gi|268585616|gb|EEZ50292.1| GTP-binding protein [Neisseria gonorrhoeae PID18]
 gi|291012133|gb|EFE04122.1| GTP-binding protein [Neisseria gonorrhoeae DGI2]
          Length = 392

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 71/213 (33%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDV 244
             +   + I  LK  +++   Q  L    R   +I    ++G++N GKSSLFN L K  +
Sbjct: 180 DRRLTAHRINALKKQLANLKKQRALRRKSRESGRIKTFALVGYTNVGKSSLFNRLTKSGI 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 240 YAKDQLFATLDTTARRLYISPACSIILTDTVGFVSDLPHKLISAFSATLEETVQADVLLH 299

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 300 VVDAAAPNSGQQIEDVENVLQEIHAHDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 360 RISVAENTGIDALREAIAEHCAAAPNTDETEMP 392


>gi|297608564|ref|NP_001061774.2| Os08g0407000 [Oryza sativa Japonica Group]
 gi|255678439|dbj|BAF23688.2| Os08g0407000 [Oryza sativa Japonica Group]
          Length = 75

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 36/49 (73%)

Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288
            + + AIVT+I GTTRDV+  ++ + G  + + DTAGIRETDDIVEK G
Sbjct: 4   LQSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGIRETDDIVEKIG 52


>gi|312976818|ref|ZP_07788567.1| GTP-binding protein HflX [Lactobacillus crispatus CTV-05]
 gi|310896146|gb|EFQ45211.1| GTP-binding protein HflX [Lactobacillus crispatus CTV-05]
          Length = 421

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 26/215 (12%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
             + + +   I  +K ++ +   Q ++    RN     K+ ++G++NAGKS+  N L ++
Sbjct: 162 ELNRRTIGKQISAIKKELKAVAGQEEIKAARRNQSRIPKVALVGYTNAGKSTTMNGLLRE 221

Query: 243 -------DVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFL 294
                      V ++   T D     ++L+  +   +SDT G          E  K T  
Sbjct: 222 FSKEGADKEVFVKNMLFATLDTSVRRINLKDNFSFILSDTVGFISKLPHNLVESFKATLQ 281

Query: 295 EVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTY---TEEY 339
           E  +ADL++ + + +    +               K I  I    K+D         E  
Sbjct: 282 ETRDADLLINVVDASDPNMVQMIRTTQNVLDEIGVKEIPMITAYNKADKTDRNYPQIEGD 341

Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
           D L S+   + ++ L N I   +   +KK    +P
Sbjct: 342 DILYSAIDPKSIKLLANLITKRVFANYKKFDLILP 376


>gi|303234147|ref|ZP_07320793.1| ferrous iron transport protein B [Finegoldia magna BVS033A4]
 gi|302494688|gb|EFL54448.1| ferrous iron transport protein B [Finegoldia magna BVS033A4]
          Length = 709

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 20/189 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I + G+ N+GKS++FNAL   +   V + PG T +     L      +KI+D  GI  
Sbjct: 3   IRIALAGNPNSGKSTMFNALTGSNQ-YVGNWPGVTVEKKEGTLK-NNKDIKITDLPGIYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN------------SKKEISFPKNIDFIFIGT 327
                 +E + R +L  E  D+I+ + + +            S+  I      + + +  
Sbjct: 61  LSPYTLEEVVSRNYLINEKPDVIIDVVDASNIERNLYLTTQLSEIGIPMVLAFNMMDVVK 120

Query: 328 KSD------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
           K++      L S         +S+     L+ELI   +  + +  + +       +  L 
Sbjct: 121 KNNDKLNTKLISEKLGIPIVEVSALKKLNLDELIEVAQKQVKSHHESIKSFSDEIENVLT 180

Query: 382 HLSQTVRYL 390
            +  +V  +
Sbjct: 181 EIENSVESI 189


>gi|325110009|ref|YP_004271077.1| ferrous iron transporter B [Planctomyces brasiliensis DSM 5305]
 gi|324970277|gb|ADY61055.1| ferrous iron transport protein B [Planctomyces brasiliensis DSM
           5305]
          Length = 748

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 77/214 (35%), Gaps = 26/214 (12%)

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
            + ++G+ N GKS+LFN L+  + A V + PG T +         G  + + D  G    
Sbjct: 24  HVALIGNPNTGKSTLFNRLSGMN-AHVGNYPGVTVEKKVGRYRNAGETIHVVDLPGTYSL 82

Query: 281 DDIVEKEGIKRTFLEVENADL-----ILLLKEINSKKE------ISFPKNIDFIFIGTKS 329
                 E +    L  E  DL     +L + +    +                I +   S
Sbjct: 83  SPRTADEMVSVQVLLGEQKDLPPIDAVLCIVDSLQLQRNFYLVSQILDMQRPTILVLNMS 142

Query: 330 DLYSTYTEEYD------------HLISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPS 375
           D       + D              I++ +G+G++EL  ++  +L    K ++ P S PS
Sbjct: 143 DEVERQNMKIDAAALEKRLGVPVVPIAARSGQGIDELKTRLHDLLAKPTKEEQTPDSYPS 202

Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409
            K     L+      +       +   D +AE L
Sbjct: 203 KKFPDAFLTTCQELQQAVEEKTGNALPDYLAERL 236


>gi|153940567|ref|YP_001390434.1| ferrous iron transport protein B [Clostridium botulinum F str.
           Langeland]
 gi|152936463|gb|ABS41961.1| ferrous iron transport protein B [Clostridium botulinum F str.
           Langeland]
 gi|295318521|gb|ADF98898.1| ferrous iron transport protein B [Clostridium botulinum F str.
           230613]
          Length = 587

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 22/180 (12%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
               +LG+ N GK+SLFN L   +   V +  G T +     ++     +KI D  GI  
Sbjct: 2   ITTALLGNPNVGKTSLFNQLTGSNQ-YVGNWAGVTVEKKEGFVND---SIKIVDLPGIYA 57

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------NIDFIFIGTKSDLYS 333
            D    +E + + FL   N D+I+ + + ++     +        N   I +    D+  
Sbjct: 58  MDTFSNEEKVSKNFLINGNVDVIIDIVDASNLDRNLYLTTQLKQFNKPIILVLNMIDVAE 117

Query: 334 TYTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
               + ++             I +  G G+++LI  +++     +K         +R  Y
Sbjct: 118 NKGIKINYDILSKELNVKVIPIIASKGIGIDKLIETLENKTFLSYKDNNDYNFESERDAY 177


>gi|293398973|ref|ZP_06643138.1| GTP-binding protein HflX [Neisseria gonorrhoeae F62]
 gi|291610387|gb|EFF39497.1| GTP-binding protein HflX [Neisseria gonorrhoeae F62]
          Length = 392

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 71/213 (33%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDV 244
             +   + I  LK  +++   Q  L    R   +I    ++G++N GKSSLFN L K  +
Sbjct: 180 DRRLTAHRINALKKQLANLKKQRALRRKSRESGRIKTFALVGYTNVGKSSLFNRLTKSGI 239

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 240 YAKDQLFATLDTTARRLYISPACSIILTDTVGFVSDLPHKLISAFSATLEETVQADVLLH 299

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 300 VVDAAARNSGQQIEDVENVLQEIHAHDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 359

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 360 RISVAENTGIDALREAIAEYCAAAPNTDETEMP 392


>gi|116872727|ref|YP_849508.1| GTP-binding protein HflX [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741605|emb|CAK20729.1| GTP-binding protein HflX [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 409

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 102/285 (35%), Gaps = 42/285 (14%)

Query: 120 NGKIDLLEAESLADLISSE--TEMQRRL---SME--GMSGELSSLYGQWIDKL------- 165
           N ++   +  +++ ++ +      Q  L   +M      G+L   Y Q+   L       
Sbjct: 81  NSELSATQVRNISKVVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQG 140

Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG----YK 221
           T +             E       + +   +  +K  + +H+ + +   I R      ++
Sbjct: 141 TSLSKLGGGIGSRGPGESKLEMDKRHIREKMYDIKAQL-THVEKHRKRIIDRRNTQSVFR 199

Query: 222 IVILGHSNAGKSSLFNALAK----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277
             ++G++NAGKS++FN L      ++  +   +  TTR +        G+   ++DT G 
Sbjct: 200 FGLIGYTNAGKSTIFNRLTNETTLEEDKLFATLDPTTRKIRFE----GGFHALLTDTVGF 255

Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFI 325
            +          + T  E  N D+++ + + +    +                ++  + +
Sbjct: 256 IQDLPTTLIAAFRSTLEETANVDVLIHIVDASDPDYLQHETTVIKLLQELEMNHLPTLVV 315

Query: 326 GTKSDLYST--YTEEYDH-LISSFTGEGLEELINKIKSILSNKFK 367
             K D        +  +H L S+   +  + +  ++  ++   + 
Sbjct: 316 YNKMDKAPATFVPDRPEHLLFSALNPDAPKIIKQRMIELIEKNWS 360


>gi|255658317|ref|ZP_05403726.1| putative GTP-binding protein HflX [Mitsuokella multacida DSM 20544]
 gi|260849636|gb|EEX69643.1| putative GTP-binding protein HflX [Mitsuokella multacida DSM 20544]
          Length = 615

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 35/198 (17%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280
           + ++G++NAGKS+L N L   +V    D    T D  T  L L     + ++DT G  + 
Sbjct: 383 VALVGYTNAGKSTLLNKLTGAEV-FAEDKLFATLDPTTRHLVLPEKQEILLTDTVGFIQK 441

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEIS---------FPKNIDFIFIGTK 328
                 +  + T  EV+ ADL+L + + ++   +++I             +   +++  K
Sbjct: 442 LPHTLVKAFRATLEEVQEADLLLHVVDCSNENYEQQIESVVEVLKELDAVDKPTLYVFNK 501

Query: 329 SDLYSTYTEEY--------------------DHLISSFTGEGLEELINKIKSILSNKFKK 368
           +D ++                             +S+ TG  L  L   I+   S +  +
Sbjct: 502 ADRFAVPDAAPGQARKGLTPAQEAMMLHGREGICVSARTGANLLALQQLIEHFFSEQQVQ 561

Query: 369 LPFSIPSHK-RHLYHLSQ 385
           +   IP  + R L  L +
Sbjct: 562 MELLIPFAQGRLLTELHE 579


>gi|224367871|ref|YP_002602034.1| HflX [Desulfobacterium autotrophicum HRM2]
 gi|223690587|gb|ACN13870.1| HflX [Desulfobacterium autotrophicum HRM2]
          Length = 486

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 91/273 (33%), Gaps = 24/273 (8%)

Query: 130 SLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189
            +   I S     R   ++    +L+ L  +                     E       
Sbjct: 177 GVILEIFSRHAKSREALIQVEIAKLTYLAPRLRASHMGGDRQGGGIGSKGAGETSHELDK 236

Query: 190 KEVLNDILFLKNDISSHIS-QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248
           + + + I  LK+ + S    Q +     R  +++ ++G++NAGKSSL   L   DV +V 
Sbjct: 237 RRIRDRISELKSRLVSIRDEQTRRRSRRRENFQVALVGYTNAGKSSLMRKLTGSDV-LVE 295

Query: 249 DIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
           D    T D     L  E Y  + ISDT G  +          + T  E   A L+L   +
Sbjct: 296 DKLFATLDTRVKALQPEAYPPILISDTVGFIKKLPHDLVASFQSTLDEALAASLLLFTVD 355

Query: 308 INSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEE-------YDHLISSFT 347
            +               KEI   K      I  K D  +T   E       +   IS+  
Sbjct: 356 ASDPAFRSQLTVTQSVLKEIGGEKIPGL-LILNKIDKLTTGALEVLRHEFPHGIFISAHN 414

Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380
            + +  L  KI         +    IP  K H+
Sbjct: 415 PKDVALLRKKILQHFQENMIETTMVIPYDKGHI 447


>gi|332366999|gb|EGJ44739.1| GTP-binding protein HflX [Streptococcus sanguinis SK1059]
          Length = 412

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 81/213 (38%), Gaps = 24/213 (11%)

Query: 148 EGMSGELSSLYGQWIDKLTHIRSF----------IEADLDFSEEEDVQNFSSKEVLNDIL 197
               G+L     Q    L  +             I +      + ++   S +  ++DI 
Sbjct: 117 RSHEGKLQVHLAQLKYLLPRLVGQGIMLSRQAGGIGSRGPGESQLELNRRSVRNQIHDIE 176

Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257
                +  + +  +   +  + +KI ++G++NAGKS++ N L  K      ++   T D 
Sbjct: 177 RQLKAVEKNRATVREKRLESSIFKIGLIGYTNAGKSTIMNCLTSKSQYEADELFA-TLDA 235

Query: 258 LTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316
            T +++L G L V ++DT G  +          K T  E +N DL++ + + +       
Sbjct: 236 TTKNINLSGQLNVTLTDTVGFIQDLPTELVSSFKSTLEESKNVDLLVHVIDASDPHHEEH 295

Query: 317 PK------------NIDFIFIGTKSDLYSTYTE 337
            K            +I  + +  K+D    +T 
Sbjct: 296 EKTVLDIMKELDMLDIPRLTLYNKADKAEHFTP 328


>gi|302379555|ref|ZP_07268040.1| ferrous iron transport protein B [Finegoldia magna ACS-171-V-Col3]
 gi|302312462|gb|EFK94458.1| ferrous iron transport protein B [Finegoldia magna ACS-171-V-Col3]
          Length = 709

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 75/189 (39%), Gaps = 20/189 (10%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            +I + G+ N+GKS++FNAL   +   V + PG T +     L      +KI+D  GI  
Sbjct: 3   IRIALAGNPNSGKSTMFNALTGSNQ-YVGNWPGVTVEKKEGTLK-NNKDIKITDLPGIYS 60

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------EISFPK----NIDFIFI 325
                 +E + R +L  E  D+I+ + + ++ +          EI  P     N+  +  
Sbjct: 61  LSPYTLEEVVSRNYLINEKPDVIIDVVDASNIERNLYLTTQLSEIGIPMVLAFNMMDVVK 120

Query: 326 GTKSDLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381
                L +    E        +S+     L+ELI   +  + +  + +       +  L 
Sbjct: 121 KNNDKLNTKLISEKLGVPIVEVSALKKLNLDELIEVAQKQVKSHHESIKSFSDEIENVLT 180

Query: 382 HLSQTVRYL 390
            +  +V  +
Sbjct: 181 EIENSVESI 189


>gi|198276044|ref|ZP_03208575.1| hypothetical protein BACPLE_02228 [Bacteroides plebeius DSM 17135]
 gi|198271673|gb|EDY95943.1| hypothetical protein BACPLE_02228 [Bacteroides plebeius DSM 17135]
          Length = 825

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 73/189 (38%), Gaps = 24/189 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
           +  E ++  + + +++  +I+QGK     R    + ++G+ N GK+SLFN  +      V
Sbjct: 85  TYHEPISQGIPVSDEVMKNIAQGK-----RRTINVALVGNPNCGKTSLFNVASGGHE-HV 138

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307
            +  G T D      D +GY  ++ D  G         +E   R  +  E  D+I+ + +
Sbjct: 139 GNYSGVTVDAKEGFFDFQGYHFRLVDLPGTYSLSAYSPEELYVRKHIIEETPDVIINVVD 198

Query: 308 INSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------------SSFTGE 349
             + +            N+  +      D       + ++               S TGE
Sbjct: 199 AGNLERNLYLTTQLIDMNVRMVVALNMYDALQHSGNKLNYHKLSELLGVPMVPTVSRTGE 258

Query: 350 GLEELINKI 358
           G++ L + I
Sbjct: 259 GIDNLFHVI 267


>gi|217967951|ref|YP_002353457.1| ferrous iron transport protein B [Dictyoglomus turgidum DSM 6724]
 gi|217337050|gb|ACK42843.1| ferrous iron transport protein B [Dictyoglomus turgidum DSM 6724]
          Length = 659

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 19/161 (11%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
            ++ + G+ N GKS++FN L   +     + PG T +     ++ + Y+++I+D  GI  
Sbjct: 6   IRVALAGNPNVGKSTVFNQLTGLNQH-TGNWPGKTVEKKVGYVEKDHYILEITDLPGIYS 64

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT------------ 327
                 +E I R F+  E  D+++L+ + ++ +   +        I              
Sbjct: 65  LTANTLEELISREFIVKEKPDIVILIVDASALERNLYLLLQLRELIPNIIIGLNMLDILK 124

Query: 328 ----KSDLY--STYTEEYDHLISSFTGEGLEELINKIKSIL 362
               K D+             + +  G G++ELINK+  + 
Sbjct: 125 AKRYKLDVKKLEERLNIPIIPMIASRGIGIDELINKVIEVY 165


>gi|224533274|ref|ZP_03673868.1| GTP-binding protein [Borrelia burgdorferi CA-11.2a]
 gi|224513439|gb|EEF83796.1| GTP-binding protein [Borrelia burgdorferi CA-11.2a]
          Length = 279

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 100/264 (37%), Gaps = 14/264 (5%)

Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174
           +RA +  K +L +A  + +++ +      +  +     +  +             + I  
Sbjct: 13  KRALDLIKNNLQKANIVLEILDARAPFSSKNPLTEKITKNQAKIILLHKSDVAQINEIIK 72

Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234
              + E        S      +     DI   ++  K  +  +   K++I+G  N GKSS
Sbjct: 73  WKKYFENLGNTVIISNIYKKGMRKQIIDIIKKLAIVKNIKNYKEKIKVLIIGVPNVGKSS 132

Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294
           + N L+ K  A V + PG T+++  + ++ E   + + D  GI   + + +    K   L
Sbjct: 133 IINLLSGKKSAKVANKPGYTKNIQIVKINEE---INLFDMPGILWHNLVDQSIAKKLAIL 189

Query: 295 EV------ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348
           ++      +N DL L L EI  +   +       I+     D+   + +          G
Sbjct: 190 DMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKAR-----KLIG 244

Query: 349 EGLEELINKIKSILSNKFKKLPFS 372
           +  E  + K   IL  +F++  F 
Sbjct: 245 KKNELNLEKASKILIKEFREGKFG 268


>gi|90962408|ref|YP_536324.1| GTP-binding protein [Lactobacillus salivarius UCC118]
 gi|301300241|ref|ZP_07206453.1| GTP-binding protein HflX [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90821602|gb|ABE00241.1| GTP-binding protein [Lactobacillus salivarius UCC118]
 gi|300852182|gb|EFK79854.1| GTP-binding protein HflX [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 419

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 88/233 (37%), Gaps = 23/233 (9%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL-------A 240
             ++ ++++     +I S     +      +   + ++G++NAGKS+  N L        
Sbjct: 165 VIEKRISNLSKELKEIESVHENQRRARERSSIKTVALVGYTNAGKSTTMNGLLKLLEQPT 224

Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
            K+V     +  T    +      +     +SDT G          +  + T  E   AD
Sbjct: 225 NKEVFEKDMLFATLDTSIRKIKLPDNKEFFLSDTVGFVSDLPHQLVKAFRTTLSEANQAD 284

Query: 301 LILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTY---TEEYDHLISS 345
           L++ + + + +                  K+I  I+   KSDL ST    +       S+
Sbjct: 285 LLIQVIDGSDEHAKDMIETTKQTLDEIGVKDIPMIYAYNKSDLTSTPYPSSVGNQFYYSA 344

Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLEMASLNE 397
              + +E LIN IK  L   +    + IP  + R+L  +++    L+   L E
Sbjct: 345 KDKKSIEMLINLIKENLFQDYVTHTYLIPFSEGRYLEIINKQANILKTDYLAE 397


>gi|240103162|ref|YP_002959471.1| Fe2+ transport protein B (feoB) [Thermococcus gammatolerans EJ3]
 gi|239910716|gb|ACS33607.1| Fe2+ transport protein B (feoB) [Thermococcus gammatolerans EJ3]
          Length = 662

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 31/225 (13%)

Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281
           + + G+ N GK+++FN L       V + PG T +      + +G    + D  G     
Sbjct: 6   VALAGNPNVGKTTIFNDLTG-MRQHVGNWPGVTVEKKEGVFEHKGERFLVVDLPGTYSLT 64

Query: 282 DIVEKEGIKRTFL---------EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLY 332
                E + R FL         +V +A  +L  + +    EI      + I    K DL 
Sbjct: 65  AHSVDELVARNFLLNGNPDVVVDVVDATAVL--RNLYLTMEIFEMGLKNVIIALNKVDLA 122

Query: 333 STYTEEYDHLISSFT------------GEGLEELINKIKSILSNKFKKLPFSI---PSHK 377
                + D +  S              G G+EEL  KI  +     K  P      P  +
Sbjct: 123 EKKGIKIDPVKMSKALGVPVVPLNAKEGAGIEELKEKIWEMAHGMIKTNPVLPRYDPEVE 182

Query: 378 RHLYHLSQTVRYLEMA-SLNEKDCGLDIIAEN---LRLASVSLGK 418
           R + H+S+ +   E+A     +   + ++  +   ++L    LG+
Sbjct: 183 REIEHISKCLEGTELADRYPLRWLAIKLLQRDDEVMKLVLRHLGE 227


>gi|282600131|ref|ZP_05973129.2| putative GTP-binding protein [Providencia rustigianii DSM 4541]
 gi|282566534|gb|EFB72069.1| putative GTP-binding protein [Providencia rustigianii DSM 4541]
          Length = 252

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 78/191 (40%), Gaps = 17/191 (8%)

Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDI 283
           +G + AGKSSL NAL +  ++ V+D+ G TR      + +  + +   D  G+ E+ +  
Sbjct: 1   MGKTGAGKSSLINALFQCQLSPVSDVSGCTRQAQRFSMTVNNHTLTFIDLPGVGESLERD 60

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDL 331
            E   + R    +   DLI+ + + + +   S              +   F+F+  ++D 
Sbjct: 61  KEYHQLYRNL--LPELDLIIWVLKADDRAWSSDEQCYRFLTEQCGYQPKRFLFVLNQADK 118

Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391
                 ++D      + E    L+ K K++++      P    S   + Y L++    L 
Sbjct: 119 IEP-CRQWDEQYHQPSAEQTAHLLLKQKAVITAFKPHHPVMTVSAVEN-YQLTELAEQLI 176

Query: 392 MASLNEKDCGL 402
            A   +   G+
Sbjct: 177 QALPAQASSGV 187


>gi|194901584|ref|XP_001980332.1| GG19324 [Drosophila erecta]
 gi|190652035|gb|EDV49290.1| GG19324 [Drosophila erecta]
          Length = 373

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 15/138 (10%)

Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267
           ++ +  E  +    I ++G  N GKS+  N      V   +    TTR   T        
Sbjct: 48  AESRNPEEGQRSLHIAVIGVPNVGKSTFINNTVNHRVCPTSAKVHTTRQSNTAIFTTGQT 107

Query: 268 LVKISDTAGI---RETDDIVEKEGIKRTFL-EVENADLILLLKEINSK-----------K 312
            +   DT G+    E       +  K  +   +++AD+I ++ + ++             
Sbjct: 108 QLVFYDTPGLVTQHEIRRHHLDQNFKSAYRHAIQHADIIAVVHDASNGWTRKELHPTVLD 167

Query: 313 EISFPKNIDFIFIGTKSD 330
            +    N+    +  K D
Sbjct: 168 TLKAYSNLPSFLVLNKID 185


>gi|317480454|ref|ZP_07939550.1| ferrous iron transporter B [Bacteroides sp. 4_1_36]
 gi|316903401|gb|EFV25259.1| ferrous iron transporter B [Bacteroides sp. 4_1_36]
          Length = 823

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 30/220 (13%)

Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223
           ++  I S  EA     + +  +       L +           + Q  LG+  R    + 
Sbjct: 67  EMIEIISEQEAKEQAVQPDYHEGLGENMHLGEDE---------LKQLALGK--RRTINVA 115

Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283
           ++G+ N GK+SLFN  +      V +  G T D      D +GY  +I D  G       
Sbjct: 116 LVGNPNCGKTSLFNIASGSHE-HVGNYSGVTVDAKEGYFDFQGYHFRIVDLPGTYSLSAY 174

Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTE 337
             +E   R  +  E  D+I+ + + ++ +            N+  +      D       
Sbjct: 175 SPEEIYVRRHIINETPDIIINVVDSSNLERNLYLTTQLIDMNVRMVIALNMYDELEASGN 234

Query: 338 EYDH------------LISSFTGEGLEELINKIKSILSNK 365
             D+               S +G+G+E+L + I +I    
Sbjct: 235 TLDYVKLSQLFGVPMLPTVSRSGKGIEQLFHVIINIYEGG 274


>gi|125778570|ref|XP_001360043.1| GA19430 [Drosophila pseudoobscura pseudoobscura]
 gi|54639793|gb|EAL29195.1| GA19430 [Drosophila pseudoobscura pseudoobscura]
          Length = 363

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 89/220 (40%), Gaps = 9/220 (4%)

Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE---IIRNG-Y 220
           +    + IE ++  +++     +    +   +   ++ +     +G+ GE   ++++G  
Sbjct: 3   ILEKIAEIEREIARTQKNKATEYHLGLLKAKLAKYRSQLLEPTKKGEKGEGFDVLKSGDA 62

Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280
           ++ ++G  + GKS++ + L K + +   +   TT   +   ++ +G  +++ D  GI E 
Sbjct: 63  RVALIGFPSVGKSTMLSTLTKTE-SEAANYEFTTLTCIPGVIEYQGANIQLLDLPGIIEG 121

Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNIDFIFIGTKSDLYSTYTE 337
               +  G ++       ADL+L++ +       +E+   +         K      + +
Sbjct: 122 AAQGKGRG-RQVIAVARTADLVLMMLDATKPNVHRELLERELESVGIRLNKRKPNIYFKQ 180

Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377
           +    +S  +   L     K+  ++ + FK     +   +
Sbjct: 181 KKGGGLSFNSTCTLTRCSEKMVQMILHSFKIFNAEVLFRE 220


>gi|313619980|gb|EFR91520.1| GTP-binding protein HflX [Listeria innocua FSL S4-378]
          Length = 418

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 88/246 (35%), Gaps = 28/246 (11%)

Query: 188 SSKEVLNDILFLKNDISSHISQGK---LGEIIRNGYKIVILGHSNAGKSSLFNALAK--- 241
             + + + I  L+ ++   +   +             + ++G++NAGKS+  N L +   
Sbjct: 159 DRRTIKHQIRHLQKELDMLVDDREVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYS 218

Query: 242 ----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297
               K V     +  T    +   +  +     ++DT G          +  + T  E  
Sbjct: 219 ETADKQVFEKDMLFATLETSVREIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEEAR 278

Query: 298 NADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYS----TYTEEYDH 341
           +ADL++ + + +     +  K            ++  I+   K+DL          E   
Sbjct: 279 DADLLIHVVDYSDPHYKTMMKTTEETLKAVGVEDVPVIYAYNKADLIEGEIYPKQTENTI 338

Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401
           + S+   E L  L   I+  L   ++K  F IP     +        + ++ +    + G
Sbjct: 339 VFSAREEESLVFLTEVIRKELFASYEKATFLIPFEAGQVVAYLN--DHADVLATEYLENG 396

Query: 402 LDIIAE 407
            +I+AE
Sbjct: 397 TEIVAE 402


>gi|322421585|ref|YP_004200808.1| ferrous iron transport protein B [Geobacter sp. M18]
 gi|320127972|gb|ADW15532.1| ferrous iron transport protein B [Geobacter sp. M18]
          Length = 738

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279
             + + G+ N+GKS+L NA+A      V +  G T +      D  G  +++ D  G   
Sbjct: 27  ITVAVAGNPNSGKSTLINAIAGT-RLHVGNWAGVTVEKKEALFDFGGRKIRLVDLPGTYS 85

Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312
                ++E + R +L  E  DLI+ + +  + +
Sbjct: 86  LSPYSQEEIVARDYLVHECPDLIINVVDSTNLE 118


>gi|310828251|ref|YP_003960608.1| GTP-binding protein [Eubacterium limosum KIST612]
 gi|308739985|gb|ADO37645.1| GTP-binding protein [Eubacterium limosum KIST612]
          Length = 603

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 91/249 (36%), Gaps = 29/249 (11%)

Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH---- 206
            G+L     Q   +L+H++               +    K++  D   ++  I       
Sbjct: 300 EGKLQVELAQQKYRLSHLKGLGIVLSRTGGGIGTRGPGEKKLETDRRHIRRQIDELERKN 359

Query: 207 --ISQGK----LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260
             I+Q       G    N   + ++G++N+GKS+LFN L + D A++ D    T D    
Sbjct: 360 AKINQTNELNAKGRKKNNIRTVSLIGYTNSGKSTLFNVLTESD-AVIKDGLFITLDSTIR 418

Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP 317
            +  E     +SDT G  E       +  K T  EVE ADL+L + + ++   K +I   
Sbjct: 419 KVRPEAGDYLVSDTVGFIEKLPHELIKAFKTTLKEVETADLLLHVVDASNPNYKSQIEVV 478

Query: 318 K---------NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL------EELINKIKSIL 362
                     +   + +  K D       E     ++  G+ +      +  I  +  I+
Sbjct: 479 NQVLRDIGSGHKKVLMVYNKMDRLPPEERERFENRAARAGDAICISAREKWHIGALTEII 538

Query: 363 SNKFKKLPF 371
               + +  
Sbjct: 539 DGDLRGMSL 547


>gi|240014016|ref|ZP_04720929.1| GTP-binding protein [Neisseria gonorrhoeae DGI18]
 gi|240118108|ref|ZP_04732170.1| GTP-binding protein [Neisseria gonorrhoeae PID1]
 gi|240121582|ref|ZP_04734544.1| GTP-binding protein [Neisseria gonorrhoeae PID24-1]
          Length = 374

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 71/213 (33%), Gaps = 26/213 (12%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI---VILGHSNAGKSSLFNALAKKDV 244
             +   + I  LK  +++   Q  L    R   +I    ++G++N GKSSLFN L K  +
Sbjct: 162 DRRLTAHRINALKKQLANLKKQRALRRKSRESGRIKTFALVGYTNVGKSSLFNRLTKSGI 221

Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304
                +  T               + ++DT G               T  E   AD++L 
Sbjct: 222 YAKDQLFATLDTTARRLYISPACSIILTDTVGFVSDLPHKLISAFSATLEETVQADVLLH 281

Query: 305 LKEI---NSKKEISFPKN---------IDFIFIGTKSDLYSTYTEEYDHLI--------- 343
           + +    NS ++I   +N         I  I +  K+DL  +  +               
Sbjct: 282 VVDAAAPNSGQQIEDVENVLQEIHAHDIPCIKVYNKTDLLPSEEQNTGIWRDAAGKIAAV 341

Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
             S     G++ L   I    +         +P
Sbjct: 342 RISVAENTGIDALREAIAEYCAAAPNTDETEMP 374


>gi|149200804|ref|ZP_01877779.1| GTP-binding protein Era [Roseovarius sp. TM1035]
 gi|149145137|gb|EDM33163.1| GTP-binding protein Era [Roseovarius sp. TM1035]
          Length = 301

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 24/166 (14%)

Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276
           R G+ I ++G  NAGKS+L N +    V+IVT    TTR  +          +   DT G
Sbjct: 4   RAGF-IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGQSQLVFVDTPG 62

Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNIDFIFIG 326
           + +    +++  +   +    +AD+++LL E +           +      K        
Sbjct: 63  LFQPRRRLDRAMVAAAWGGAADADVVILLIEAHRGVTEGVERILEGLTGIAKGRKVALAI 122

Query: 327 TKSDLY-------------STYTEEYDHLISSFTGEGLEELINKIK 359
            K D                 +  E   LIS+  G G+++L   + 
Sbjct: 123 NKIDRVQAQVLLALTKDMNERFAFEKTFLISAERGHGVDDLRQWLA 168


>gi|327395421|dbj|BAK12843.1| GTP-binding protein hflX [Pantoea ananatis AJ13355]
          Length = 426

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 97/279 (34%), Gaps = 28/279 (10%)

Query: 136 SSET-EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194
            + T E + ++ +  +    + L   W   L   +  I        + +      +  ++
Sbjct: 114 RARTHEGKLQVELAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRGRIS 172

Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
            IL     +     QG+      +   + ++G++NAGKS+LFNA+   +V    D    T
Sbjct: 173 QILSRLERVEKQREQGRQARAKADVPTVSLVGYTNAGKSTLFNAITSANV-YAADQLFAT 231

Query: 255 RDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------ 307
            D     L++     V ++DT G             K T  E   A L++ + +      
Sbjct: 232 LDPTLRRLNVADVGDVVLADTVGFIRHLPHDLVAAFKATLQETRQATLLMHVIDAADVRV 291

Query: 308 ------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---------HLISSFTGEGLE 352
                 +N   E      I  + I  K D+   +    D           +S+ +G G+ 
Sbjct: 292 NENIGAVNEVLEEIDADEIPTLLIMNKIDMLDGFEPRIDRDEENMPVRVWLSAQSGVGIP 351

Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVR 388
            L   +   LS +  +    +P      R  ++  Q + 
Sbjct: 352 LLWQALSERLSGEIAQYDLRLPPEAGRLRSRFYQLQAIE 390


>gi|237723185|ref|ZP_04553666.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298484346|ref|ZP_07002507.1| ferrous iron transport protein B [Bacteroides sp. D22]
 gi|229447707|gb|EEO53498.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|295087950|emb|CBK69473.1| ferrous iron transporter FeoB [Bacteroides xylanisolvens XB1A]
 gi|298269500|gb|EFI11100.1| ferrous iron transport protein B [Bacteroides sp. D22]
          Length = 828

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 8/126 (6%)

Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247
              E L + L +K +    ++ GK     R    + ++G+ N+GK+SLFN  +      V
Sbjct: 85  VYHEGLPEDLSVKEEDMKRLALGK-----RRTINVALVGNPNSGKTSLFNLASGAHE-HV 138

Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLK 306
            +  G T D      D EGY  +I D  G    +    E+  ++R  ++ E  D+I+ + 
Sbjct: 139 GNYSGVTVDAKEGYFDFEGYHFRIVDLPGTYSLSAYTPEEIYVRRHIID-ETPDVIINVV 197

Query: 307 EINSKK 312
           + ++ +
Sbjct: 198 DSSNLE 203


>gi|166030472|ref|ZP_02233301.1| hypothetical protein DORFOR_00133 [Dorea formicigenerans ATCC
           27755]
 gi|166029724|gb|EDR48481.1| hypothetical protein DORFOR_00133 [Dorea formicigenerans ATCC
           27755]
          Length = 728

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 20/153 (13%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G KI + G+ N+GK++LFNAL   +   V + PG T +        E   V I D  GI 
Sbjct: 2   GVKIALAGNPNSGKTTLFNALTGSNQ-FVGNWPGVTVEKKEGKWK-EDKEVVIMDLPGIY 59

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLY 332
                  +E + R +L  E  D IL + +  + +             I  +      D+ 
Sbjct: 60  SLSPYTLEEVVARNYLITERPDAILNIVDGTNLERNLYLTTQLLELGIPVVMAINMMDIV 119

Query: 333 STYTEEYD------------HLISSFTGEGLEE 353
               +E +              IS+  G+G+++
Sbjct: 120 RKNGDEINTKKLAEKLGCEVVTISALKGDGIKD 152


>gi|148553179|ref|YP_001260761.1| GTP-binding protein, HSR1-like [Sphingomonas wittichii RW1]
 gi|148498369|gb|ABQ66623.1| GTP-binding protein, HSR1-related [Sphingomonas wittichii RW1]
          Length = 442

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 92/279 (32%), Gaps = 44/279 (15%)

Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195
           ++  E + ++ +  +  +   L   W   L   R          E +       + + + 
Sbjct: 125 AATAEGRLQVELAHLDYQAGRLVRSWTH-LERQRGGFGFLGGPGETQI--EADRRLIRDR 181

Query: 196 ILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252
           +  L+ ++        L    R       I ++G++NAGKS+LFN +    V    D+  
Sbjct: 182 MAKLRRELEQVRRTRGLHRARRQRAPWPVIALVGYTNAGKSTLFNRMTGAKVM-AEDLLF 240

Query: 253 TTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311
            T D     + L G     +SDT G             + T  EV  AD+IL +++I+  
Sbjct: 241 ATLDPTMRQISLPGLDKAILSDTVGFVSDLPTQLVAAFRATLEEVTGADIILHVRDISHP 300

Query: 312 KEISFP--------------------------KNIDFIFIGTKSDLYSTYTEEYDHLI-- 343
              +                            +    + +  K D+              
Sbjct: 301 DSDAQAGDVLAVLGEIGVGPRAPEGHGSGEAGEGAPILEVWNKIDMLDPEARAATEAEAA 360

Query: 344 --------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374
                   S+ TGEG+EEL   +   LS   +    S+P
Sbjct: 361 RRDDVAPLSALTGEGVEELRRLVSDRLSTGNRVRTLSVP 399


>gi|297621460|ref|YP_003709597.1| GTP-binding protein [Waddlia chondrophila WSU 86-1044]
 gi|297376761|gb|ADI38591.1| GTP-binding protein [Waddlia chondrophila WSU 86-1044]
          Length = 434

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 103/262 (39%), Gaps = 38/262 (14%)

Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKK 242
               + +   I  L+ +I++  +      I R         I+G++NAGKS+L NAL   
Sbjct: 177 EIDRRLLKTKIFHLQKEINAVQAHRDTQRIQRERSEIPTFAIVGYTNAGKSTLLNALT-- 234

Query: 243 DVAIVT-DIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300
           +  I T D    T D  T    L     + ++DT G       +     + T  E   AD
Sbjct: 235 EAGIFTEDKLFATLDTTTRKFTLPNNQEILLTDTVGFIRKLPHLLVAAFRSTLEEAVQAD 294

Query: 301 LILLLKEINSKKEISF------------PKNIDFIFIGTKSD----------LYSTYTEE 338
           +++ L + +    +               K+   I +  K D          L + +T+ 
Sbjct: 295 ILIHLIDSSHPMALEQAEATVEVLHELGAKDKPVITVLNKIDRLEDRAILKKLRTKFTK- 353

Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398
               +S+   +G + L  ++   L  + + +   IP  ++    +S+ +R+  +  LN++
Sbjct: 354 -TVNLSALYKQGFDHLTEQMTEELQKRRRVVNLRIP--QKDYAVVSEVMRHGNI--LNQE 408

Query: 399 DCGLDIIA-ENLRLASVSLGKI 419
               D++   +L   S  LG+I
Sbjct: 409 YEENDVVMRVDL--PSRYLGRI 428


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.152    0.441 

Lambda     K      H
   0.267   0.0465    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,923,406,660
Number of Sequences: 14124377
Number of extensions: 348725201
Number of successful extensions: 1546153
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 19710
Number of HSP's successfully gapped in prelim test: 19491
Number of HSP's that attempted gapping in prelim test: 1484187
Number of HSP's gapped (non-prelim): 48305
length of query: 440
length of database: 4,842,793,630
effective HSP length: 142
effective length of query: 298
effective length of database: 2,837,132,096
effective search space: 845465364608
effective search space used: 845465364608
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 83 (36.4 bits)